diff --git a/.circleci/config.yml b/.circleci/config.yml index f118e3591a9..a0658a7878e 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -6,7 +6,7 @@ version: 2 jobs: build_backend: docker: - - image: maven:3-openjdk-11 + - image: maven:3-eclipse-temurin-21 working_directory: /tmp/repos/cbioportal steps: - checkout @@ -18,10 +18,10 @@ jobs: - v1-mvn-dependencies-{{ checksum "poms_combined" }} - v1-mvn-dependencies- - run: - name: Build and unzip war + name: Build and unzip jar command: | - mvn -DskipTests clean install && \ - unzip portal/target/cbioportal*.war -d portal/target/war-exploded + cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties && \ + mvn -DskipTests clean package - save_cache: paths: - ~/.m2 @@ -39,12 +39,12 @@ jobs: - run: name: Pull frontend code command: | - export FRONTEND_VERSION=$(grep 'frontend\.version' pom.xml | sed 's///g' | sed 's|||' | tr -d '[:blank:]') && \ + export FRONTEND_VERSION=$(grep '' pom.xml | sed 's///g' | sed 's|||' | tr -d '[:blank:]') && \ export FRONTEND_ORG=$(grep 'frontend\.groupId' pom.xml | sed 's///g' | sed 's|||' | tr -d '[:blank:]' | cut -d. -f3) && \ git clone https://github.com/$FRONTEND_ORG/cbioportal-frontend.git && \ cd cbioportal-frontend && \ git fetch --tags && \ - git checkout ${FRONTEND_VERSION} + git checkout demo-rfc72 - persist_to_workspace: root: /tmp/repos paths: @@ -145,11 +145,6 @@ jobs: command: | $TEST_HOME/docker_compose/setup.sh no_output_timeout: 25m - - run: - name: Generate checksum of data that populates the test database - command: | - bash -x $TEST_HOME/runtime-config/db_content_fingerprint.sh | tee /tmp/db_data_md5key - no_output_timeout: 25m - run: name: Create MySQL data directory command: | @@ -219,7 +214,7 @@ jobs: - store_artifacts: path: /tmp/repos/cbioportal-frontend/end-to-end-test/local/junit/errors/ destination: /errors - + environment: PORTAL_SOURCE_DIR: /tmp/repos/cbioportal-frontend/ TEST_HOME: /tmp/repos/cbioportal-frontend/end-to-end-test/local diff --git a/.github/workflows/core-test.yml b/.github/workflows/core-test.yml index 91db17f33b7..9664fa7d31e 100644 --- a/.github/workflows/core-test.yml +++ b/.github/workflows/core-test.yml @@ -17,10 +17,11 @@ jobs: uses: actions/checkout@v2 with: path: ./cbioportal - - name: 'Set up JDK 11' - uses: actions/setup-java@v1 + - name: 'Set up JDK 21' + uses: oracle-actions/setup-java@v1 with: - java-version: 11 + website: oracle.com + release: 21 - name: 'Cache Maven packages' uses: actions/cache@v1 with: @@ -40,6 +41,10 @@ jobs: run: | mkdir -p ~/.m2 && \ cp .github/settings.xml ~/.m2 + - name: 'Create application.properties' + working-directory: ./cbioportal + run: | + cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties - name: 'Build cBioPortal once without tests' working-directory: ./cbioportal run: | diff --git a/.github/workflows/dockerimage.yml b/.github/workflows/dockerimage.yml index 70ee5e1c6b0..2da139728e5 100644 --- a/.github/workflows/dockerimage.yml +++ b/.github/workflows/dockerimage.yml @@ -18,7 +18,9 @@ jobs: steps: - name: Checkout git repo uses: actions/checkout@v3 - + - name: 'Create application.properties' + run: | + cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties - name: Extract metadata id: meta uses: docker/metadata-action@v4 @@ -30,19 +32,19 @@ jobs: type=ref,event=branch type=semver,pattern={{version}} - # The following two actions are required to build multi-platform images - # buildx is an extension of docker build, QUEM is used to convert the binary to varies architecture - - name: Set up QEMU - uses: docker/setup-qemu-action@v2 - - name: Set up Docker Buildx - uses: docker/setup-buildx-action@v2 - - name: Login to DockerHub - uses: docker/login-action@v2 + uses: docker/login-action@v3 with: username: ${{ secrets.DOCKER_USERNAME }} password: ${{ secrets.DOCKER_PASSWORD }} + # The following two actions are required to build multi-platform images + # buildx is an extension of docker build, QUEM is used to convert the binary to varies architecture + - name: Set up QEMU + uses: docker/setup-qemu-action@v3 + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + - name: Publish Docker Image on Tag uses: docker/build-push-action@v3 with: @@ -60,7 +62,9 @@ jobs: steps: - name: Checkout git repo uses: actions/checkout@v3 - + - name: 'Create application.properties' + run: | + cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties - name: Extract metadata id: meta uses: docker/metadata-action@v4 @@ -75,19 +79,19 @@ jobs: type=ref,event=branch type=semver,pattern={{version}} - # The following two actions are required to build multi-platform images - # buildx is an extension of docker build, QUEM is used to convert the binary to varies architecture - - name: Set up QEMU - uses: docker/setup-qemu-action@v2 - - name: Set up Docker Buildx - uses: docker/setup-buildx-action@v2 - - name: Login to DockerHub - uses: docker/login-action@v2 + uses: docker/login-action@v3 with: username: ${{ secrets.DOCKER_USERNAME }} password: ${{ secrets.DOCKER_PASSWORD }} + # The following two actions are required to build multi-platform images + # buildx is an extension of docker build, QUEM is used to convert the binary to varies architecture + - name: Set up QEMU + uses: docker/setup-qemu-action@v3 + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + - name: Publish Docker Image on Tag uses: docker/build-push-action@v3 with: diff --git a/.github/workflows/integration-test.yml b/.github/workflows/integration-test.yml index 57ca628fc14..eb1ddd60dee 100644 --- a/.github/workflows/integration-test.yml +++ b/.github/workflows/integration-test.yml @@ -19,16 +19,21 @@ jobs: sudo apt-get install python3-setuptools && \ pip3 install -U wheel && \ pip3 install -r ./requirements.txt - - name: 'Set up JDK 11' - uses: actions/setup-java@v1 + - name: 'Set up JDK 21' + uses: oracle-actions/setup-java@v1 with: - java-version: 11 + website: oracle.com + release: 21 - name: 'Cache Maven packages' uses: actions/cache@v1 with: path: ~/.m2 key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }} restore-keys: ${{ runner.os }}-m2 + - name: 'Copy application.properties' + working-directory: ./cbioportal + run: | + cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties - name: 'Build cbioportal' working-directory: ./cbioportal run: | @@ -37,21 +42,30 @@ jobs: uses: actions/checkout@master with: repository: cbioportal/cbioportal-docker-compose + ref: demo-rfc72 path: ./cbioportal-docker-compose - name: 'Initialize cbioportal-docker-compose' working-directory: ./cbioportal-docker-compose run: | cd ./data && ./init.sh && rm -rf ./studies/* && cd ../config && \ - cat $PORTAL_SOURCE_DIR/portal/target/classes/portal.properties | \ - sed 's|db.host=.*||' | \ - sed 's|db.portal_db_name=.*||' | \ - sed 's|db.use_ssl=.*||' | \ - sed 's|db.connection_string=.*|db.connection_string=jdbc:mysql://cbioportal-database:3306/cbioportal?useSSL=false\&allowPublicKeyRetrieval=true|' \ - > portal.properties && more portal.properties + cat $PORTAL_SOURCE_DIR/src/main/resources/application.properties | \ + sed 's|spring.datasource.url=.*|spring.datasource.url=jdbc:mysql://cbioportal-database:3306/cbioportal?useSSL=false|' | \ + sed 's|spring.datasource.username=.*|spring.datasource.username=cbio_user|' | \ + sed 's|spring.datasource.password=.*|spring.datasource.password=somepassword|' \ + > application.properties && \ + echo "db.user=cbio_user" >> application.properties && \ + echo "db.password=somepassword" >> application.properties && \ + echo "db.connection_string=jdbc:mysql://cbioportal-database:3306/cbioportal?useSSL=false" >> application.properties && \ + echo "db.driver=com.mysql.jdbc.Driver" >> application.properties + - name: 'Copy cgds.sql file into Docker Compose' + run: cp ./cbioportal/src/main/resources/db-scripts/cgds.sql ./cbioportal-docker-compose/data/. + - name: 'Dump Properties' + working-directory: ./cbioportal-docker-compose + run: cat config/application.properties - name: 'Start cbioportal-docker-compose' working-directory: ./cbioportal-docker-compose run: | - docker-compose -f docker-compose.yml -f $PORTAL_SOURCE_DIR/test/integration/docker-compose-localbuild.yml up -d + export DOCKER_IMAGE_CBIOPORTAL=cbioportal/cbioportal:demo-rfc72-squash && docker-compose -f docker-compose.yml -f $PORTAL_SOURCE_DIR/test/integration/docker-compose-localbuild.yml up -d - name: 'Wait for cbioportal to initialize ...' id: startup uses: nev7n/wait_for_response@v1 @@ -60,6 +74,10 @@ jobs: responseCode: 200 timeout: 900000 interval: 30000 + - name: Log cBioPortal Service + if: ${{ failure() && steps.startup.conclusion == 'failure' }} + working-directory: ./cbioportal-docker-compose + run: docker-compose logs cbioportal - name: 'TEST - Validate and load study_es_0' if: steps.startup.conclusion == 'success' working-directory: ./cbioportal-docker-compose @@ -67,10 +85,9 @@ jobs: $PORTAL_SOURCE_DIR/test/integration/test_load_study.sh - name: 'TEST - Add OncoKB annotations to study' if: steps.startup.conclusion == 'success' - working-directory: ./cbioportal + working-directory: ./cbioportal-docker-compose run: | - export PYTHONPATH=$PORTAL_SOURCE_DIR/core/src/main/scripts && \ - $PORTAL_SOURCE_DIR/test/integration/integration_test_oncokb_import.sh + $PORTAL_SOURCE_DIR/test/integration/test_integration_test_oncokb_import.sh - name: 'TEST - Update OncoKB annotations' if: steps.startup.conclusion == 'success' working-directory: ./cbioportal-docker-compose diff --git a/.github/workflows/sonarcloud.yml b/.github/workflows/sonarcloud.yml index bcb38a958e8..bc6dc12004f 100644 --- a/.github/workflows/sonarcloud.yml +++ b/.github/workflows/sonarcloud.yml @@ -13,10 +13,10 @@ jobs: - uses: actions/checkout@v2 with: fetch-depth: 0 # Shallow clones should be disabled for a better relevancy of analysis - - name: Set up JDK 11 + - name: Set up JDK 21 uses: actions/setup-java@v1 with: - java-version: 11 + java-version: 21 - name: Cache SonarCloud packages uses: actions/cache@v1 with: @@ -29,6 +29,9 @@ jobs: path: ~/.m2 key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }} restore-keys: ${{ runner.os }}-m2 + - name: 'Create application.properties' + run: | + cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties - name: Build and analyze env: SONAR_TOKEN: de1b5cc660cd210dde840f492c371da6cc801763 diff --git a/.github/workflows/validate-data.yml b/.github/workflows/validate-data.yml index 05aabca2f21..80fc0e1818f 100644 --- a/.github/workflows/validate-data.yml +++ b/.github/workflows/validate-data.yml @@ -9,13 +9,18 @@ jobs: uses: actions/checkout@v2 with: path: ./cbioportal + - name: 'Checkout core module' + uses: actions/checkout@v4 + with: + path: ./cbioportal/core + repository: cBioPortal/cbioportal-core - name: 'Validate tests' working-directory: ./cbioportal run: | docker run -v ${PWD}:/cbioportal python:3.6 /bin/sh -c ' cd /cbioportal && pip install -r requirements.txt && - export PYTHONPATH=/cbioportal/core/src/main/scripts && + export PYTHONPATH=/cbioportal/core/src/main/resources/scripts && cd /cbioportal/core/src/test/scripts/ && python unit_tests_validate_data.py && python system_tests_validate_data.py && diff --git a/.gitignore b/.gitignore index 96a94a77245..4dda110d9ac 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,21 @@ +liftover/target/* +target/ +portal/target/* +core/target/* +annotator/target/* +importer/target/* +business/target/* +model/target/* +scripts/target +persistence/persistence-api/target/* +persistence/persistence-mybatis/target/* +persistence/persistence-mybatis-test/target/* +service/target/* +mutation-assessor/target/* +cbioportal-client/target/* +mondrian-cy3-app/target/* +utils/target/* +web/target/* nb-configuration.xml nbactions-private.xml oncotator/src/main/resources/db.properties @@ -55,6 +73,7 @@ portal/src/main/webapp/WEB-INF/logback.xml !src/main/resource/*.EXAMPLE firehose-importer/reference_data/gene_info portal.properties +application.properties importer.properties log4j.properties build.properties @@ -64,21 +83,6 @@ syntax: glob *.swp importer/*.log firehose-importer/*.txt -portal/target/* -liftover/target/* -core/target/* -annotator/target/* -importer/target/* -business/target/* -model/target/* -persistence/persistence-api/target/* -persistence/persistence-mybatis/target/* -persistence/persistence-mybatis-test/target/* -service/target/* -web/target/* -mutation-assessor/target/* -cbioportal-client/target/* -mondrian-cy3-app/target/* nbactions.xml */*.iml *.iml @@ -93,18 +97,16 @@ dependency-reduced-pom.xml /core/nbactions-private.xml .profile.d/ Procfile -scripts/target node_modules/ -target/ -portal/META-INF/* -portal/reactapp/* package.json .vscode/ *.tramp_history pom.version.* pom.xml.* -db-scripts/src/main/resources/cgds-test.sql pom.xml.* Dockerfile.local .factorypath -.retype \ No newline at end of file +.retype +security.properties +*.crt +*.key diff --git a/README.md b/README.md index 37ce2550b3f..afdcf952879 100644 --- a/README.md +++ b/README.md @@ -13,17 +13,59 @@ See [https://docs.cbioportal.org](https://docs.cbioportal.org) See [LICENSE](./LICENSE) ## 💻 Run Backend -cBioPortal consists of several components, please read the [Architecture docs](https://docs.cbioportal.org/2.1-deployment/architecture-overview) to figure out what repo would be relevant to edit. If you e.g. only want to make frontend changes, one can directly edit [the frontend repo](https://github.com/cbioportal/cbioportal-frontend) instead. Read the instructions in that repo for more info on how to do frontend development. This repo only contains the backend part. Before editing the backend, it's good to read the [backend code organization](docs/Backend-Code-Organization.md). For development of the backend repo one should first set up a database. Please follow the [Docker deployment documentation](https://docs.cbioportal.org/2.1.1-deploy-with-docker-recommended/docker) to do so. Change the [docker-compose](https://github.com/cBioPortal/cbioportal-docker-compose/blob/5da068f0eb9b4f42db52ab5e91321b26a1826d7a/docker-compose.yml#L6) file to use your image instead: +cBioPortal consists of several components, please read the [Architecture docs](https://docs.cbioportal.org/architecture-overview/) to figure out what repo would be relevant to edit. If you e.g. only want to make frontend changes, one can directly edit [the frontend repo](https://github.com/cbioportal/cbioportal-frontend) instead. Read the instructions in that repo for more info on how to do frontend development. This repo only contains the backend part. Before editing the backend, it's good to read the [backend code organization](docs/Backend-Code-Organization.md). + +### Local Development +#### What MySQL database to use +We recommend to set up a MySQL database using [Docker Compose](https://github.com/cBioPortal/cbioportal-docker-compose). It's useful to know how to do this as it allows you to import any dataset of your choice. For debugging production issues, we also have a database available with all the data on https://cbioportal.org that one can connect to directly. Please reach out on slack to get the credentials. + +#### Command Line +If you want to run the cBioPortal web app from the command line please follow these instructions. First, we want to make sure that all ports are open for the services set up through [docker compose](https://github.com/cBioPortal/cbioportal-docker-compose) (i.e. not just accessible to other containers within the same Docker Compose file). To do so, in the [docker compose repo](https://github.com/cBioPortal/cbioportal-docker-compose) run: + +``` +docker compose -f docker-compose.yml -f open-ports.yml up +``` +This should open the ports. Now we are ready to run the cBioPortal web app locally. You can compile the backend code with: +``` +export JAVA_HOME=/Library/Java/JavaVirtualMachines/temurin-11.jdk/Contents/Home/ && mvn -DskipTests clean install +``` +Note: change `JAVA_HOME` to point to a JDK 11 version. If everything compiles correctly you can then run the app like this: +``` +java -Xms2g -Xmx4g \ + -Dauthenticate=noauthsessionservice \ + -Dsession.service.url=http://localhost:5000/api/sessions/my_portal/ \ + -Dsession.service.origin='*' \ + -Dspring.datasource.username=cbio_user \ + -Dspring.datasource.password=somepassword \ + -Dspring.datasource.driver-class-name=com.mysql.cj.jdbc.Driver \ + -Dspring.jpa.database-platform=org.hibernate.dialect.MySQL5InnoDBDialect \ + -Dspring.datasource.url='jdbc:mysql://cbio_user:somepassword@localhost:3306/cbioportal?useSSL=false&allowPublicKeyRetrieval=true' \ + -Dshow.civic=true \ + -Dskin.footer='' \ + -Dapp.name='my-portal' \ + -Ddbconnector=dbcp \ + -cp "$PWD:$PWD/BOOT-INF/lib/*" \ + org.cbioportal.PortalApplication +``` +The app should now show up at http://localhost:8080. + +#### Deploy your development image inside Docker Compose +Another option is to deploy your development image directly into the [docker-compose](https://github.com/cBioPortal/cbioportal-docker-compose/blob/5da068f0eb9b4f42db52ab5e91321b26a1826d7a/docker-compose.yml#L6) file. First build the image like this ``` docker build -t cbioportal/cbioportal:my-dev-cbioportal-image -f docker/web-and-data/Dockerfile . ``` +Then change the [env file](https://github.com/cBioPortal/cbioportal-docker-compose/blob/master/.env) to use `cbioportal/cbioportal:my-dev-cbioportal-image`. + +### Local Development + + Note: internally we have a dev database available with the public data set that one can connect to directly. Please reach out on slack to get the credentials. It is usually best to use a small test dataset, but if a copy of the production database is necessary for e.g. fixing a bug specific to production data that can be useful. ### 🕵️‍♀️ Debugging -If you want to attach a debugger you can change the `docker-compose.yml` file to include the paramaters: `-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005`. Make sure to expose that port by adding `5005:5005` in the ports section of the cbioportal container. +If you want to attach a debugger you can change the `docker-compose.yml` file to include the paramaters: `-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005` (make sure to expose the debug port by adding `5005:5005` in the ports section of the cbioportal container). If you are running the java app outside of docker you can add the same parameters to the java command line arguments instead. You can then use a JAVA IDE to connect to that port. E.g. in [VSCode](https://code.visualstudio.com/), one would add the following configuration to `launch.json` to connect: diff --git a/app.json b/app.json deleted file mode 100644 index ecaf1edf5f4..00000000000 --- a/app.json +++ /dev/null @@ -1,40 +0,0 @@ -{ - "stack": "heroku-18", - "name": "cBioPortal", - "description":"The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.", - "repository":"https://github.com/cbioportal/cbioportal", - "logo":"https://www.cbioportal.org/images/cbioportal_logo.png", - "keywords": [ - "java", - "tomcat", - "javascript", - "cancer", - "genomics" - ], - "env": { - "JAVA_OPTS": { - "description":"options for jvm", - "value": "-Xmx300m -Xms300m -XX:+UseCompressedOops" - }, - "MAVEN_CUSTOM_OPTS": { - "description":"set heroku profile for mvn", - "value":"-Pheroku,public -DskipTests -Dtomcat.catalina.scope=runtime -Dfinal.war.name=cbioportal" - }, - "SPRING_OPTS": { - "description":"set spring properties with e.g. -Dshow.civic=true (TODO: not all props work atm)", - "value":"-Dauthenticate=false -Dtomcat.catalina.scope=runtime -Ddb.user=cbio_user -Ddb.password=cbio_pass -Ddb.portal_db_name=cgds_public -Ddb.connection_string=jdbc:mysql://devdb.cbioportal.org:3306/ -Ddb.host=devdb.cbioportal.org -Dshow.civic=true -Dsuppress_schema_version_mismatch_errors=true -Dsession.service.url=https://cbioportal-session-service.herokuapp.com/session_service/api/sessions/heroku_portal/" - }, - "WEBAPP_RUNNER_OPTIONS": { - "description":"set webapp runner options", - "value":"--enable-compression" - } - }, - "buildpacks": [ - { - "url": "https://github.com/inodb/cbioportal-buildpack" - }, - { - "url": "https://github.com/heroku/heroku-buildpack-java" - } - ] -} diff --git a/core/pom.xml b/core/pom.xml deleted file mode 100644 index bf4c618d7d1..00000000000 --- a/core/pom.xml +++ /dev/null @@ -1,358 +0,0 @@ - - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - core - Portal Core - Core libraries shared among other modules - - - - org.mskcc.cbio - persistence-connections - - - org.mskcc.cbio - security-spring - - - - org.mskcc.cbio - db-scripts - test - - - org.mskcc.cbio - service - - - - org.owasp - antisamy - - - - - org.antlr - antlr-runtime - - - - - org.apache.commons - commons-collections4 - - - org.apache.geronimo.bundles - commons-discovery - - - org.apache.commons - commons-dbcp2 - - - commons-fileupload - commons-fileupload - - - commons-io - commons-io - - - commons-httpclient - commons-httpclient - - - org.apache.httpcomponents - httpcore - - - commons-cli - commons-cli - - - org.apache.commons - commons-text - - - - - com.fasterxml.jackson.core - jackson-core - - - com.fasterxml.jackson.core - jackson-databind - - - com.fasterxml.jackson.dataformat - jackson-dataformat-yaml - - - - - javax.servlet - javax.servlet-api - - - - - net.sf.jopt-simple - jopt-simple - - - - - com.googlecode.json-simple - json-simple - - - - - net.sf.jung - jung-api - - - net.sf.jung - jung-graph-impl - - - - - net.sf.opencsv - opencsv - - - - - org.mockito - mockito-core - - - commons-codec - commons-codec - - - - batik - batik - - - batik - batik-rasterizer - - - org.apache.xmlgraphics - batik-codec - - - xalan - xalan - - - - - org.apache.xmlgraphics - fop - - - xerces - xercesImpl - - - - dom4j - dom4j - - - jaxen - jaxen - - - org.springframework - spring-tx - - - org.springframework - spring-test - - - org.easymock - easymock - - - org.mskcc.cbio - web - - - com.vlkan.hrrs - hrrs-servlet-filter-base64 - - - junit - junit - - - org.mskcc.cbio - maf - 0-unknown-version-SNAPSHOT - - - - - - - - org.apache.maven.plugins - maven-surefire-plugin - - always - true - - - log4j.configuration - file:${project.parent.basedir}/src/main/resources/log4j.properties - - - - ${project.parent.basedir}/src/main/resources/ - - - **/Test*.java - - - - - integration-test - - test - - integration-test - - - none - - - **/Test*.java - - - - - - - org.apache.maven.plugins - maven-dependency-plugin - - - unpack-dependencies - pre-integration-test - - unpack-dependencies - - - cgds-test.sql - ${project.build.testOutputDirectory} - db-scripts - - - - - - - org.codehaus.mojo - sql-maven-plugin - - - pre-integration-test - - execute - - - - settingsKey - ${db.test.driver} - ${db.test.url} - ${db.test.username} - ${db.test.password} - SET default_storage_engine=InnoDB - SET SESSION sql_mode = 'ANSI_QUOTES' - - ${project.build.testOutputDirectory}/cgds-test.sql - src/test/resources/seed_mini.sql - - - UTF-8 - characterEncoding=utf8, connectionCollation=utf8_general_ci - - ${skipTests} - - - - - - - org.apache.maven.plugins - maven-resources-plugin - - - copy-parent-resources - process-sources - - copy-resources - - - ${project.build.directory}/classes - - - ${project.parent.basedir}/portal/src/main/webapp/WEB-INF - true - - logback.xml - - - - ${project.parent.basedir}/src/main/resources - - **/*.properties - - - **/portal.properties.* - **/maven.properties.* - **/git.properties.* - **/*.EXAMPLE - - - - - - - - - - - - - src/main/resources - - sample_data/** - micrornas.tsv - - - - ../src/main/resources - true - - **/portal.properties - **/maven.properties - - - - - diff --git a/core/src/main/java/org/mskcc/cbio/io/WebFileConnect.java b/core/src/main/java/org/mskcc/cbio/io/WebFileConnect.java deleted file mode 100644 index ea6b1b58e8b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/io/WebFileConnect.java +++ /dev/null @@ -1,131 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.io; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; - -/** - * Web/File Connect Utility Class. - * - * @author Ethan Cerami. - */ -public class WebFileConnect -{ - public static final String TAB = "\t"; - public static final String NEW_LINE = "\n"; - - /** - * Retrieves the Content from the Specified File. - * - * @param file File Object. - * @return String Object containing the full Document Content. - * @throws IOException Read Error. - */ - public static String retrieveDocument(File file) throws IOException { - BufferedReader in = new BufferedReader(new FileReader(file)); - return readFile(in); - } - - /** - * Retrieves the Matrix Content from the Specified File. - * - * @param file File Object. - * @return Matrix of Strings. - * @throws IOException Read Error. - */ - public static String[][] retrieveMatrix(File file) throws IOException { - BufferedReader in = new BufferedReader(new FileReader(file)); - String content = readFile(in); - return prepareMatrix(content); - } - - /** - * Parses Matrix Content from the Specified String. - * - * @param content Tab-Delim String. - * @return Matrix of Strings. - * @throws IOException Read Error. - */ - public static String[][] parseMatrix(String content) throws IOException { - return prepareMatrix(content); - } - - private static String[][] prepareMatrix(String content) { - String rawLines[] = content.split(NEW_LINE); - - // Ignore all lines starting with # sign; these are comments or warnings, not data. - ArrayList finalLines = new ArrayList(); - for (String currentLine: rawLines) { - if (!currentLine.startsWith("#")) { - finalLines.add(currentLine); - } - } - - String lines[] = finalLines.toArray(new String[finalLines.size()]); - String matrix[][] = null; - int numRows = lines.length; - int numCols = 0; - if (lines.length > 0) { - String firstLine = lines[0]; - String parts[] = firstLine.split(TAB); - numCols = parts.length; - } - if (numRows > 0 && numCols > 0) { - matrix = new String[numRows][numCols]; - for (int i = 0; i < lines.length; i++) { - String parts[] = lines[i].split(TAB,numCols); - for (int j = 0; j < parts.length; j++) { - matrix[i][j] = parts[j]; - } - } - } - return matrix; - } - - /** - * Reads Content from a Buffered Reader. - */ - public static String readFile(BufferedReader in) throws IOException { - StringBuffer buf = new StringBuffer(); - String str; - while ((str = in.readLine()) != null) { - buf.append(str + "\n"); - } - in.close(); - return buf.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoAlleleSpecificCopyNumber.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoAlleleSpecificCopyNumber.java deleted file mode 100644 index 115d1717cce..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoAlleleSpecificCopyNumber.java +++ /dev/null @@ -1,69 +0,0 @@ -/* - * Copyright (c) 2019 - 2020 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -/** - * Data access object for Mutation table - */ -public final class DaoAlleleSpecificCopyNumber { - - public static int addAlleleSpecificCopyNumber(AlleleSpecificCopyNumber ascn) throws DaoException { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new DaoException("You have to turn on MySQLbulkLoader in order to insert allele specific copy numbers"); - } else { - int result = 1; - MySQLbulkLoader.getMySQLbulkLoader("allele_specific_copy_number").insertRecord( - resolveValueToString(ascn.getMutationEventId()), - resolveValueToString(ascn.getGeneticProfileId()), - resolveValueToString(ascn.getSampleId()), - resolveValueToString(ascn.getAscnIntegerCopyNumber()), - ascn.getAscnMethod(), - resolveValueToString(ascn.getCcfExpectedCopiesUpper()), - resolveValueToString(ascn.getCcfExpectedCopies()), - ascn.getClonal(), - resolveValueToString(ascn.getMinorCopyNumber()), - resolveValueToString(ascn.getExpectedAltCopies()), - resolveValueToString(ascn.getTotalCopyNumber())); - return result; - } - } - - private static String resolveValueToString(Object value) { - if (value != null) { - return String.valueOf(value); - } - return null; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCancerStudy.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCancerStudy.java deleted file mode 100644 index 4073dbbb059..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCancerStudy.java +++ /dev/null @@ -1,677 +0,0 @@ -/* - * Copyright (c) 2015 - 2017 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import java.text.*; -import java.util.*; -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -/** - * Analogous to and replaces the old DaoCancerType. A CancerStudy has a NAME and - * DESCRIPTION. If PUBLIC is true a CancerStudy can be accessed by anyone, - * otherwise can only be accessed through access control. - * - * @author Ethan Cerami - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * @author Ersin Ciftci - */ -public final class DaoCancerStudy { - - public static enum Status { - UNAVAILABLE, - AVAILABLE - } - - private static final Map cacheDateByStableId = new HashMap(); - private static final Map cacheDateByInternalId = new HashMap(); - private static final Map byStableId = new HashMap(); - private static final Map byInternalId = new HashMap(); - - static { - SpringUtil.initDataSource(); - reCacheAll(); - } - - private DaoCancerStudy() {} - - public static synchronized void reCacheAll() { - System.out.println("Recaching... "); - DaoCancerStudy.reCache(); - DaoGeneticProfile.reCache(); - DaoPatient.reCache(); - DaoSample.reCache(); - DaoClinicalData.reCache(); - DaoInfo.setVersion(); - System.out.println("Finished recaching... "); - } - - private static synchronized void reCache() { - cacheDateByStableId.clear(); - cacheDateByInternalId.clear(); - byStableId.clear(); - byInternalId.clear(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - pstmt = con.prepareStatement("SELECT * FROM cancer_study"); - rs = pstmt.executeQuery(); - while (rs.next()) { - CancerStudy cancerStudy = extractCancerStudy(rs); - cacheCancerStudy(cancerStudy, new java.util.Date()); - } - } catch (SQLException | DaoException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - private static void cacheCancerStudy(CancerStudy study, java.util.Date importDate) { - cacheDateByStableId.put(study.getCancerStudyStableId(), importDate); - cacheDateByInternalId.put(study.getInternalId(), importDate); - byStableId.put(study.getCancerStudyStableId(), study); - byInternalId.put(study.getInternalId(), study); - } - - /** - * Removes the cancer study from cache - * @param internalCancerStudyId Internal cancer study ID - */ - private static void removeCancerStudyFromCache(int internalCancerStudyId) { - String stableId = byInternalId.get(internalCancerStudyId).getCancerStudyStableId(); - cacheDateByStableId.remove(stableId); - cacheDateByInternalId.remove(internalCancerStudyId); - byStableId.remove(stableId); - byInternalId.remove(internalCancerStudyId); - } - - public static void setStatus(Status status, String stableCancerStudyId, Integer ... internalId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - if (internalId.length > 0) { - pstmt = con.prepareStatement("UPDATE cancer_study set status = ? where cancer_study_id = ?"); - pstmt.setInt(1, status.ordinal()); - pstmt.setInt(2, internalId[0]); - } else { - pstmt = con.prepareStatement("UPDATE cancer_study set status = ? where cancer_study_identifier = ?"); - pstmt.setInt(1, status.ordinal()); - pstmt.setString(2, stableCancerStudyId); - } - pstmt.executeUpdate(); - } catch (SQLException e) { - if (!e.getMessage().toLowerCase().contains("unknown column")) { - throw new DaoException(e); - } - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - public static Status getStatus(String stableCancerStudyId, Integer ... internalId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - if (internalId.length > 0) { - pstmt = con.prepareStatement("SELECT status FROM cancer_study where cancer_study_id = ?"); - pstmt.setInt(1, internalId[0]); - } else { - pstmt = con.prepareStatement("SELECT status FROM cancer_study where cancer_study_identifier = ?"); - pstmt.setString(1, stableCancerStudyId); - } - rs = pstmt.executeQuery(); - if (rs.next()) { - Integer status = rs.getInt(1); - if (rs.wasNull()) { - return Status.AVAILABLE; - } - if (status>=Status.values().length) { - return Status.AVAILABLE; - } - return Status.values()[status]; - } else { - return Status.AVAILABLE; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - private static Integer getStudyCount() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - pstmt = con.prepareStatement("SELECT count(*) from cancer_study"); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } else { - return 0; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - public static void setImportDate(Integer internalId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - pstmt = con.prepareStatement("UPDATE cancer_study set IMPORT_DATE = NOW() where cancer_study_id = ?"); - pstmt.setInt(1, internalId); - pstmt.executeUpdate(); - } catch (SQLException e) { - if (e.getMessage().toLowerCase().contains("unknown column")) { - return; - } - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - public static java.util.Date getImportDate(String stableCancerStudyId, Integer ... internalId) throws DaoException, ParseException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - if (internalId.length > 0) { - pstmt = con.prepareStatement("SELECT IMPORT_DATE FROM cancer_study where cancer_study_id = ?"); - pstmt.setInt(1, internalId[0]); - } else { - pstmt = con.prepareStatement("SELECT IMPORT_DATE FROM cancer_study where cancer_study_identifier = ?"); - pstmt.setString(1, stableCancerStudyId); - } - rs = pstmt.executeQuery(); - if (rs.next()) { - java.sql.Timestamp importDate = rs.getTimestamp(1); - if (rs.wasNull()) { - return new SimpleDateFormat("yyyyMMdd").parse("19180511"); - } else { - return importDate; - } - } else { - return new SimpleDateFormat("yyyyMMdd").parse("19180511"); - } - } catch (SQLException e) { - if (e.getMessage().toLowerCase().contains("unknown column")) { - return new SimpleDateFormat("yyyyMMdd").parse("19180511"); - } - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - /** - * Adds a cancer study to the Database. - * Updates cancerStudy with its auto incremented uid, in studyID. - * - * @param cancerStudy Cancer Study Object. - * @throws DaoException Database Error. - */ - public static void addCancerStudy(CancerStudy cancerStudy) throws DaoException { - addCancerStudy(cancerStudy, false); - } - - /** - * Adds a cancer study to the Database. - * @param cancerStudy - * @param overwrite if true, overwrite if exist. - * @throws DaoException - */ - public static void addCancerStudy(CancerStudy cancerStudy, boolean overwrite) throws DaoException { - // make sure that cancerStudy refers to a valid TypeOfCancerId - // TODO: have a foreign key constraint do this; why not? - TypeOfCancer aTypeOfCancer = DaoTypeOfCancer.getTypeOfCancerById(cancerStudy.getTypeOfCancerId()); - if (null == aTypeOfCancer) { - throw new DaoException("cancerStudy.getTypeOfCancerId() '" + cancerStudy.getTypeOfCancerId() + "' does not refer to a TypeOfCancer."); - } - // CANCER_STUDY_IDENTIFIER cannot be null - String stableId = cancerStudy.getCancerStudyStableId(); - if (stableId == null) { - throw new DaoException("Cancer study stable ID cannot be null."); - } - CancerStudy existing = getCancerStudyByStableId(stableId); - if (existing!=null) { - if (overwrite) { - //setStatus(Status.UNAVAILABLE, stableId); - deleteCancerStudy(existing.getInternalId()); - } else { - throw new DaoException("Cancer study " + stableId + "is already imported."); - } - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - pstmt = con.prepareStatement("INSERT INTO cancer_study " + - "( `CANCER_STUDY_IDENTIFIER`, `NAME`, " - + "`DESCRIPTION`, `PUBLIC`, `TYPE_OF_CANCER_ID`, " - + "`PMID`, `CITATION`, `GROUPS`, `STATUS`,`REFERENCE_GENOME_ID`, `IMPORT_DATE` ) VALUES (?,?,?,?,?,?,?,?,?,?,NOW())", - Statement.RETURN_GENERATED_KEYS); - pstmt.setString(1, stableId); - pstmt.setString(2, cancerStudy.getName()); - pstmt.setString(3, cancerStudy.getDescription()); - pstmt.setBoolean(4, cancerStudy.isPublicStudy()); - pstmt.setString(5, cancerStudy.getTypeOfCancerId()); - pstmt.setString(6, cancerStudy.getPmid()); - pstmt.setString(7, cancerStudy.getCitation()); - Set groups = cancerStudy.getGroups(); - if (groups==null) { - pstmt.setString(8, null); - } else { - pstmt.setString(8, StringUtils.join(groups, ";")); - } - //status is UNAVAILABLE until other data is loaded for this study. Once all is loaded, the - //data loading process can set this to AVAILABLE: - //TODO - use this field in parts of the system that build up the list of studies to display in home page: - pstmt.setInt(9, Status.UNAVAILABLE.ordinal()); - try { - ReferenceGenome referenceGenome = DaoReferenceGenome.getReferenceGenomeByGenomeName(cancerStudy.getReferenceGenome()); - pstmt.setInt(10, referenceGenome.getReferenceGenomeId()); - } - catch (NullPointerException e) { - throw new DaoException("Unsupported reference genome"); - } - pstmt.executeUpdate(); - rs = pstmt.getGeneratedKeys(); - if (rs.next()) { - int autoId = rs.getInt(1); - cancerStudy.setInternalId(autoId); - } - cacheCancerStudy(cancerStudy, new java.util.Date()); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - reCacheAll(); - } - - public static void addCancerStudyTags(CancerStudyTags cancerStudyTags) throws DaoException { - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - pstmt = con.prepareStatement("INSERT INTO cancer_study_tags " + - "( `CANCER_STUDY_ID`,`TAGS` ) VALUES (?,?)"); - pstmt.setInt(1, cancerStudyTags.getCancerStudyId()); - pstmt.setString(2, cancerStudyTags.getTags()); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - /** - * Return the cancerStudy identified by the internal cancer study ID, if it exists. - * - * @param internalId Internal (int) Cancer Study ID. - * @return Cancer Study Object, or null if there's no such study. - */ - public static CancerStudy getCancerStudyByInternalId(int internalId) throws DaoException { - return byInternalId.get(internalId); - } - - /** - * Returns the cancerStudy identified by the stable identifier, if it exists. - * - * @param stableId Cancer Study Stable ID. - * @return the CancerStudy, or null if there's no such study. - */ - public static CancerStudy getCancerStudyByStableId(String stableId) throws DaoException { - return byStableId.get(stableId); - } - - /** - * Indicates whether the cancerStudy identified by the stable ID exists. - * - * @param cancerStudyStableId Cancer Study Stable ID. - * @return true if the CancerStudy exists, otherwise false - */ - public static boolean doesCancerStudyExistByStableId(String cancerStudyStableId) { - return byStableId.containsKey(cancerStudyStableId); - } - - /** - * Indicates whether the cancerStudy identified by internal study ID exist. - * does no access control, so only returns a boolean. - * - * @param internalCancerStudyId Internal Cancer Study ID. - * @return true if the CancerStudy exists, otherwise false - */ - public static boolean doesCancerStudyExistByInternalId(int internalCancerStudyId) { - return byInternalId.containsKey(internalCancerStudyId); - } - - /** - * Returns all the cancerStudies. - * - * @return ArrayList of all CancerStudy Objects. - */ - public static ArrayList getAllCancerStudies() { - return new ArrayList(byStableId.values()); - } - - /** - * Gets Number of Cancer Studies. - * @return number of cancer studies. - */ - public static int getCount() { - return byStableId.size(); - } - - /** - * Deletes all Cancer Studies. - * @throws DaoException Database Error. - * - * @deprecated this should not be used. Use deleteCancerStudy(cancerStudyStableId) instead - */ - public static void deleteAllRecords() throws DaoException { - cacheDateByStableId.clear(); - cacheDateByInternalId.clear(); - byStableId.clear(); - byInternalId.clear(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE cancer_study"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - /** - * - * @param cancerStudyStableId - * @throws DaoException - * @deprecated - */ - public static void deleteCancerStudy(String cancerStudyStableId) throws DaoException { - CancerStudy study = getCancerStudyByStableId(cancerStudyStableId); - if (study != null){ - //setStatus(Status.UNAVAILABLE, cancerStudyStableId); - deleteCancerStudy(study.getInternalId()); - } - } - - public static Set getFreshGroups(int internalCancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - pstmt = con.prepareStatement("SELECT * FROM cancer_study where cancer_study_id = ?"); - pstmt.setInt(1, internalCancerStudyId); - rs = pstmt.executeQuery(); - if (rs.next()) { - CancerStudy cancerStudy = extractCancerStudy(rs); - return cancerStudy.getGroups(); - } else { - return Collections.emptySet(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - /** - * Calls deleteCancerStudyByCascade() if cancer study exists by stable id. - * @param cancerStudyStableId - * @throws DaoException - */ - public static void deleteCancerStudyByCascade(String cancerStudyStableId) throws DaoException { - CancerStudy study = getCancerStudyByStableId(cancerStudyStableId); - if (study != null) { - deleteCancerStudyByCascade(study.getInternalId()); - } - } - - /** - * Deletes a cancer study by internal id from db with foreign key constraints enforced. - * @param internalCancerStudyId - * @throws DaoException - */ - public static void deleteCancerStudyByCascade(int internalCancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - pstmt = con.prepareStatement("DELETE FROM cancer_study WHERE cancer_study_id = ?"); - pstmt.setInt(1, internalCancerStudyId); - int rows = pstmt.executeUpdate(); - // throw dao exception if no rows affected by update - if (rows == 0) { - throw new DaoException("deleteCancerStudyByCascade() failed: No rows affected"); - } - removeCancerStudyFromCache(internalCancerStudyId); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - purgeUnreferencedRecordsAfterDeletionOfStudy(); - reCacheAll(); - System.out.println("deleted study:\nID: "+internalCancerStudyId); - } - - /** - * Deletes the Specified Cancer Study. - * This method uses a large set of database operations to progressively delete all associated - * data for a cancer study (including the study itself). A cleaner alternative based on - * foreign key constraints and the cascade of delete operations is also available - * (see deleteCancerStudyByCascade(int internalCancerStudyId)). - * - * Note to maintainers: Although deprecated, this method must be maintained for use in - * environments where foreign key constraints are not in use, so remember to update the - * implementation of this method if new tables are added or existing tables are changed. - * - * @param internalCancerStudyId Internal Cancer Study ID. - * @throws DaoException Database Error. - * @deprecated - */ - public static void deleteCancerStudy(int internalCancerStudyId) throws DaoException { - String[] deleteStudyStatements = { - "DELETE FROM sample_cna_event WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM genetic_alteration WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM genetic_profile_samples WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM sample_profile WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM mutation WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM alteration_driver_annotation WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM mutation_count_by_keyword WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM clinical_attribute_meta WHERE CANCER_STUDY_ID=?", - "DELETE FROM resource_definition WHERE CANCER_STUDY_ID=?", - "DELETE FROM resource_study WHERE INTERNAL_ID=?", - "DELETE FROM clinical_event_data WHERE CLINICAL_EVENT_ID IN (SELECT CLINICAL_EVENT_ID FROM clinical_event WHERE PATIENT_ID IN (SELECT INTERNAL_ID FROM patient WHERE CANCER_STUDY_ID=?))", - "DELETE FROM clinical_event WHERE PATIENT_ID IN (SELECT INTERNAL_ID FROM patient WHERE CANCER_STUDY_ID=?)", - "DELETE FROM sample_list_list WHERE LIST_ID IN (SELECT LIST_ID FROM sample_list WHERE CANCER_STUDY_ID=?)", - "DELETE FROM clinical_sample WHERE INTERNAL_ID IN (SELECT INTERNAL_ID FROM sample WHERE PATIENT_ID IN (SELECT INTERNAL_ID FROM patient WHERE CANCER_STUDY_ID=?))", - "DELETE FROM resource_sample WHERE INTERNAL_ID IN (SELECT INTERNAL_ID FROM sample WHERE PATIENT_ID IN (SELECT INTERNAL_ID FROM patient WHERE CANCER_STUDY_ID=?))", - "DELETE FROM copy_number_seg WHERE CANCER_STUDY_ID=?", - "DELETE FROM copy_number_seg_file WHERE CANCER_STUDY_ID=?", - "DELETE FROM sample WHERE PATIENT_ID IN (SELECT INTERNAL_ID FROM patient WHERE CANCER_STUDY_ID=?)", - "DELETE FROM clinical_patient WHERE INTERNAL_ID IN (SELECT INTERNAL_ID FROM patient WHERE CANCER_STUDY_ID=?)", - "DELETE FROM resource_patient WHERE INTERNAL_ID IN (SELECT INTERNAL_ID FROM patient WHERE CANCER_STUDY_ID=?)", - "DELETE FROM patient WHERE CANCER_STUDY_ID=?", - "DELETE FROM sample_list WHERE CANCER_STUDY_ID=?", - "DELETE FROM structural_variant WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE CANCER_STUDY_ID=?)", - "DELETE FROM genetic_profile_link WHERE REFERRED_GENETIC_PROFILE_ID IN (select GENETIC_PROFILE_ID FROM genetic_profile where CANCER_STUDY_ID=?)", - "DELETE FROM genetic_profile WHERE CANCER_STUDY_ID=?", - "DELETE FROM gistic_to_gene WHERE GISTIC_ROI_ID IN (SELECT GISTIC_ROI_ID FROM gistic WHERE CANCER_STUDY_ID=?)", - "DELETE FROM gistic WHERE CANCER_STUDY_ID=?", - "DELETE FROM mut_sig WHERE CANCER_STUDY_ID=?", - "DELETE FROM cancer_study WHERE CANCER_STUDY_ID=?;" - }; - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - // check whether should delete generic assay meta profile by profile - DaoGenericAssay.checkAndDeleteGenericAssayMetaInStudy(internalCancerStudyId); - - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - for (String statementString : deleteStudyStatements) { - pstmt = con.prepareStatement(statementString); - if (statementString.contains("?")) { - pstmt.setInt(1, internalCancerStudyId); - } - pstmt.executeUpdate(); - pstmt.close(); - } - removeCancerStudyFromCache(internalCancerStudyId); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - purgeUnreferencedRecordsAfterDeletionOfStudy(); - reCacheAll(); - System.out.println("deleted study:\nID: "+internalCancerStudyId); - } - - /** - * Cleans up unreferenced records after cancer study deletion - * @throws DaoException - */ - public static void purgeUnreferencedRecordsAfterDeletionOfStudy() throws DaoException { - String[] deleteStudyStatements = { - "DELETE FROM cna_event WHERE NOT EXISTS (SELECT * FROM sample_cna_event WHERE sample_cna_event.CNA_EVENT_ID = cna_event.CNA_EVENT_ID)", - "DELETE FROM mutation_event WHERE NOT EXISTS (SELECT * FROM mutation WHERE mutation.MUTATION_EVENT_ID = mutation_event.MUTATION_EVENT_ID)" - }; - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - for (String statementString : deleteStudyStatements) { - pstmt = con.prepareStatement(statementString); - pstmt.executeUpdate(); - pstmt.close(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } - - /** - * Extracts Cancer Study JDBC Results. - */ - private static CancerStudy extractCancerStudy(ResultSet rs) throws DaoException { - try { - CancerStudy cancerStudy = new CancerStudy(rs.getString("NAME"), - rs.getString("DESCRIPTION"), - rs.getString("CANCER_STUDY_IDENTIFIER"), - rs.getString("TYPE_OF_CANCER_ID"), - rs.getBoolean("PUBLIC")); - cancerStudy.setPmid(rs.getString("PMID")); - cancerStudy.setCitation(rs.getString("CITATION")); - cancerStudy.setGroupsInUpperCase(rs.getString("GROUPS")); - cancerStudy.setInternalId(rs.getInt("CANCER_STUDY_ID")); - cancerStudy.setImportDate(rs.getDate("IMPORT_DATE")); - cancerStudy.setReferenceGenome(DaoReferenceGenome.getReferenceGenomeByInternalId( - rs.getInt("REFERENCE_GENOME_ID")).getGenomeName()); - return cancerStudy; - } catch (SQLException e) { - throw new DaoException(e); - } - } - - private static boolean studyNeedsRecaching(String stableId, Integer ... internalId) { - if (cacheOutOfSyncWithDb()) { - return true; - } - try { - java.util.Date importDate = null; - java.util.Date cacheDate = null; - if (internalId.length > 0) { - importDate = getImportDate(null, internalId[0]); - cacheDate = cacheDateByInternalId.get(internalId[0]); - } else { - if (stableId.equals(org.mskcc.cbio.portal.util.AccessControl.ALL_CANCER_STUDIES_ID)) { - return false; - } - importDate = getImportDate(stableId); - cacheDate = cacheDateByStableId.get(stableId); - } - return (importDate == null || cacheDate == null) ? false : cacheDate.before(importDate); - } catch (ParseException e) { - return false; - } catch (DaoException e) { - return false; - } - } - - private static boolean cacheOutOfSyncWithDb() { - try { - return getStudyCount() != byStableId.size(); - } catch (DaoException e) { - } - return false; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalAttributeMeta.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalAttributeMeta.java deleted file mode 100644 index 4a725c41c96..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalAttributeMeta.java +++ /dev/null @@ -1,252 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import com.google.inject.internal.Join; -import org.apache.commons.lang3.StringUtils; - -import java.sql.*; -import java.util.*; -import org.mskcc.cbio.portal.util.InternalIdUtil; - -/** - * Data Access Object for `clinical_attribute_meta` table - * - * @author Gideon Dresdner - */ -public class DaoClinicalAttributeMeta { - - public static int addDatum(ClinicalAttribute attr) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalAttributeMeta.class); - pstmt = con.prepareStatement - ("INSERT INTO clinical_attribute_meta(" + - "`ATTR_ID`," + - "`DISPLAY_NAME`," + - "`DESCRIPTION`," + - "`DATATYPE`," + - "`PATIENT_ATTRIBUTE`," + - "`PRIORITY`," + - "`CANCER_STUDY_ID`)" + - " VALUES(?,?,?,?,?,?,?)"); - pstmt.setString(1, attr.getAttrId()); - pstmt.setString(2, attr.getDisplayName()); - pstmt.setString(3, attr.getDescription()); - pstmt.setString(4, attr.getDatatype()); - pstmt.setBoolean(5, attr.isPatientAttribute()); - pstmt.setString(6, attr.getPriority()); - pstmt.setInt(7, attr.getCancerStudyId()); - return pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalAttributeMeta.class, con, pstmt, rs); - } - } - - private static ClinicalAttribute unpack(ResultSet rs) throws SQLException { - return new ClinicalAttribute(rs.getString("ATTR_ID"), - rs.getString("DISPLAY_NAME"), - rs.getString("DESCRIPTION"), - rs.getString("DATATYPE"), - rs.getBoolean("PATIENT_ATTRIBUTE"), - rs.getString("PRIORITY"), - rs.getInt("CANCER_STUDY_ID")); - } - - public static ClinicalAttribute getDatum(String attrId, Integer cancerStudyId) throws DaoException { - List attrs = getDatum(Arrays.asList(attrId), cancerStudyId); - if (attrs.isEmpty()) { - return null; - } - - return attrs.get(0); - } - - public static List getDatum(Collection attrIds, Integer cancerStudyId) throws DaoException { - if(attrIds == null || attrIds.isEmpty() ) { - return Collections.emptyList(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalAttributeMeta.class); - - pstmt = con.prepareStatement("SELECT * FROM clinical_attribute_meta WHERE ATTR_ID IN ('" - + StringUtils.join(attrIds,"','")+"') AND CANCER_STUDY_ID=" + String.valueOf(cancerStudyId)); - - rs = pstmt.executeQuery(); - - List list = new ArrayList(); - while (rs.next()) { - list.add(unpack(rs)); - } - - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalAttributeMeta.class, con, pstmt, rs); - } - } - - public static List getDatum(Collection attrIds) throws DaoException { - if(attrIds == null || attrIds.isEmpty() ) { - return Collections.emptyList(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalAttributeMeta.class); - - pstmt = con.prepareStatement("SELECT * FROM clinical_attribute_meta WHERE ATTR_ID IN ('" - + StringUtils.join(attrIds,"','")+"')"); - - rs = pstmt.executeQuery(); - - List list = new ArrayList(); - while (rs.next()) { - list.add(unpack(rs)); - } - - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalAttributeMeta.class, con, pstmt, rs); - } - } - - public static List getDataByStudy(int cancerStudyId) throws DaoException - { - List attrs = new ArrayList(); - attrs.addAll(getDataByCancerStudyId(cancerStudyId)); - - return attrs; - } - - /** - * Gets all the clinical attributes for a particular set of samples - * Looks in the clinical table for all records associated with any of the samples, extracts and uniques - * the attribute ids, then finally uses the attribute ids to fetch the clinical attributes from the db. - * - * @param sampleIdSet - * @return - * @throws DaoException - */ - private static List getDataByCancerStudyId(int cancerStudyId) throws DaoException { - - Connection con = null; - ResultSet rs = null; - PreparedStatement pstmt = null; - - String sql = ("SELECT DISTINCT ATTR_ID FROM clinical_attribute_meta" - + " WHERE CANCER_STUDY_ID = " + String.valueOf(cancerStudyId)); - - Set attrIds = new HashSet(); - try { - con = JdbcUtil.getDbConnection(DaoClinicalAttributeMeta.class); - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - - while(rs.next()) { - attrIds.add(rs.getString("ATTR_ID")); - } - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalAttributeMeta.class, con, pstmt, rs); - } - - return getDatum(attrIds, cancerStudyId); - } - - private static Collection getAll() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - Collection all = new ArrayList(); - - try { - con = JdbcUtil.getDbConnection(DaoClinicalAttributeMeta.class); - pstmt = con.prepareStatement("SELECT * FROM clinical_attribute_meta"); - rs = pstmt.executeQuery(); - - while (rs.next()) { - all.add(unpack(rs)); - } - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalAttributeMeta.class, con, pstmt, rs); - } - return all; - } - - public static Map getAllMap() throws DaoException { - - HashMap toReturn = new HashMap(); - for (ClinicalAttribute clinicalAttribute : DaoClinicalAttributeMeta.getAll()) { - toReturn.put(clinicalAttribute.getAttrId(), clinicalAttribute.getDisplayName()); - } - return toReturn; - } - - /** - * Deletes all Records. - * @throws DaoException DAO Error. - */ - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalAttributeMeta.class); - pstmt = con.prepareStatement("TRUNCATE TABLE clinical_attribute_meta"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalAttributeMeta.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalData.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalData.java deleted file mode 100755 index f626d9f4c1a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalData.java +++ /dev/null @@ -1,663 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.InternalIdUtil; - -import org.apache.commons.lang3.StringUtils; - -import java.sql.*; -import java.util.*; - -/** - * Data Access Object for `clinical` table - * - * @author Gideon Dresdner dresdnerg@cbio.mskcc.org - */ -public final class DaoClinicalData { - - public static final String SAMPLE_TABLE = "clinical_sample"; - public static final String PATIENT_TABLE = "clinical_patient"; - - private static final String SAMPLE_INSERT = "INSERT INTO " + SAMPLE_TABLE + "(`INTERAL_ID`,`ATTR_ID`,`ATTR_VALUE` VALUES(?,?,?)"; - private static final String PATIENT_INSERT = "INSERT INTO " + PATIENT_TABLE + "(`INTERNAL_ID`,`ATTR_ID`,`ATTR_VALUE` VALUES(?,?,?)"; - - private static final Map sampleAttributes = new HashMap(); - private static final Map patientAttributes = new HashMap(); - - private DaoClinicalData() {} - - public static synchronized void reCache() - { - clearCache(); - cacheAttributes(SAMPLE_TABLE, sampleAttributes); - cacheAttributes(PATIENT_TABLE, patientAttributes); - } - - private static void clearCache() - { - sampleAttributes.clear(); - patientAttributes.clear(); - } - - private static void cacheAttributes(String table, Map cache) - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - pstmt = con.prepareStatement("SELECT * FROM " + table); - rs = pstmt.executeQuery(); - while (rs.next()) { - cache.put(rs.getString("ATTR_ID"), rs.getString("ATTR_ID")); - } - } - catch (SQLException e) { - e.printStackTrace(); - } - finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - } - - public static int addSampleDatum(int internalSampleId, String attrId, String attrVal) throws DaoException - { - sampleAttributes.put(attrId, attrId); - return addDatum(SAMPLE_INSERT, SAMPLE_TABLE, internalSampleId, attrId, attrVal); - } - - public static int addPatientDatum(int internalPatientId, String attrId, String attrVal) throws DaoException - { - patientAttributes.put(attrId, attrId); - return addDatum(PATIENT_INSERT, PATIENT_TABLE, internalPatientId, attrId, attrVal); - } - - public static int addDatum(String query, String tableName, - int internalId, String attrId, String attrVal) throws DaoException - { - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.getMySQLbulkLoader(tableName).insertRecord(Integer.toString(internalId), - attrId, - attrVal); - return 1; - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - - pstmt = con.prepareStatement(query); - pstmt.setInt(1, internalId); - pstmt.setString(2, attrId); - pstmt.setString(3, attrVal); - int toReturn = pstmt.executeUpdate(); - - if (tableName.equals(PATIENT_TABLE)) { - patientAttributes.put(attrId, attrId); - } - else { - sampleAttributes.put(attrId, attrId); - } - - return toReturn; - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - } - - public static ClinicalData getDatum(String cancerStudyId, String patientId, String attrId) throws DaoException - { - int internalCancerStudyId = getInternalCancerStudyId(cancerStudyId); - String table = getAttributeTable(attrId); - if (table==null) { - return null; - } - return getDatum(internalCancerStudyId, - table, - DaoPatient.getPatientByCancerStudyAndPatientId(internalCancerStudyId, patientId).getInternalId(), - attrId); - } - - private static int getInternalCancerStudyId(String cancerStudyId) throws DaoException - { - return DaoCancerStudy.getCancerStudyByStableId(cancerStudyId).getInternalId(); - } - - - private static String getAttributeTable(String attrId) throws DaoException - { - if (sampleAttributes.containsKey(attrId)) { - return SAMPLE_TABLE; - } - else if (patientAttributes.containsKey(attrId)) { - return (PATIENT_TABLE); - } - else { - return null; - } - } - - private static ClinicalData getDatum(int internalCancerStudyId, String table, int internalId, String attrId) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - - pstmt = con.prepareStatement("SELECT * FROM " + table + - " WHERE INTERNAL_ID=? AND ATTR_ID=?"); - pstmt.setInt(1, internalId); - pstmt.setString(2, attrId); - - rs = pstmt.executeQuery(); - if (rs.next()) { - return extract(table, internalCancerStudyId, rs); - } - else { - return null; - } - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - } - - public static List getDataByPatientId(int cancerStudyId, String patientId) throws DaoException - { - List internalIds = new ArrayList(); - internalIds.add(DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId).getInternalId()); - return getDataByInternalIds(cancerStudyId, PATIENT_TABLE, internalIds); - } - - private static List getDataByInternalIds(int internalCancerStudyId, String table, List internalIds) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - List clinicals = new ArrayList(); - String sql = ("SELECT * FROM " + table + " WHERE `INTERNAL_ID` IN " + - "(" + generateIdsSql(internalIds) + ")"); - - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - while (rs.next()) { - clinicals.add(extract(table, internalCancerStudyId, rs)); - } - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - - return clinicals; - } - - public static List getData(String cancerStudyId) throws DaoException - { - return getData(getInternalCancerStudyId(cancerStudyId)); - } - public static List getData(int cancerStudyId) throws DaoException - { - - return getDataByInternalIds(cancerStudyId, PATIENT_TABLE, getPatientIdsByCancerStudy(cancerStudyId)); - } - - private static List getPatientIdsByCancerStudy(int cancerStudyId) - { - List patientIds = new ArrayList(); - for (Patient patient : DaoPatient.getPatientsByCancerStudyId(cancerStudyId)) { - patientIds.add(patient.getInternalId()); - } - return patientIds; - } - - private static List getSampleIdsByCancerStudy(int cancerStudyId) - { - List sampleIds = new ArrayList(); - for (Patient patient : DaoPatient.getPatientsByCancerStudyId(cancerStudyId)) { - for (Sample s : DaoSample.getSamplesByPatientId(patient.getInternalId())) { - sampleIds.add(s.getInternalId()); - } - } - return sampleIds; - } - - public static List getData(String cancerStudyId, Collection patientIds) throws DaoException - { - return getData(getInternalCancerStudyId(cancerStudyId), patientIds); - } - public static List getData(int cancerStudyId, Collection patientIds) throws DaoException - { - List patientIdsInt = new ArrayList(); - for (String patientId : patientIds) { - patientIdsInt.add(DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId).getInternalId()); - } - - return getDataByInternalIds(cancerStudyId, PATIENT_TABLE, patientIdsInt); - } - - public static List getSampleAndPatientData(int cancerStudyId, Collection sampleIds) throws DaoException - { - List sampleIdsInt = new ArrayList(); - List patientIdsInt = new ArrayList(); - Map> mapPatientIdSampleIds = new HashMap>(); - for (String sampleId : sampleIds) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId); - sampleIdsInt.add(sample.getInternalId()); - int patientIdInt = sample.getInternalPatientId(); - String patientIdStable = DaoPatient.getPatientById(patientIdInt).getStableId(); - patientIdsInt.add(patientIdInt); - Set sampleIdsForPatient = mapPatientIdSampleIds.get(patientIdStable); - if (sampleIdsForPatient==null) { - sampleIdsForPatient = new HashSet(); - mapPatientIdSampleIds.put(patientIdStable, sampleIdsForPatient); - } - sampleIdsForPatient.add(sampleId); - } - List sampleClinicalData = getDataByInternalIds(cancerStudyId, SAMPLE_TABLE, sampleIdsInt); - - List patientClinicalData = getDataByInternalIds(cancerStudyId, PATIENT_TABLE, patientIdsInt); - for (ClinicalData cd : patientClinicalData) { - String stablePatientId = cd.getStableId(); - Set sampleIdsForPatient = mapPatientIdSampleIds.get(stablePatientId); - for (String sampleId : sampleIdsForPatient) { - ClinicalData cdSample = new ClinicalData(cd); - cdSample.setStableId(sampleId); - sampleClinicalData.add(cdSample); - } - } - - return sampleClinicalData; - } - - public static List getSampleAndPatientData(int cancerStudyId, Collection sampleIds, ClinicalAttribute attr) throws DaoException - { - List sampleIdsInt = new ArrayList(); - List patientIdsInt = new ArrayList(); - Map> mapPatientIdSampleIds = new HashMap>(); - for (String sampleId : sampleIds) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId); - sampleIdsInt.add(sample.getInternalId()); - int patientIdInt = sample.getInternalPatientId(); - String patientIdStable = DaoPatient.getPatientById(patientIdInt).getStableId(); - patientIdsInt.add(patientIdInt); - Set sampleIdsForPatient = mapPatientIdSampleIds.get(patientIdStable); - if (sampleIdsForPatient==null) { - sampleIdsForPatient = new HashSet(); - mapPatientIdSampleIds.put(patientIdStable, sampleIdsForPatient); - } - sampleIdsForPatient.add(sampleId); - } - List sampleClinicalData = getDataByInternalIds(cancerStudyId, SAMPLE_TABLE, sampleIdsInt, Collections.singletonList(attr.getAttrId())); - - List patientClinicalData = getDataByInternalIds(cancerStudyId, PATIENT_TABLE, patientIdsInt, Collections.singletonList(attr.getAttrId())); - for (ClinicalData cd : patientClinicalData) { - String stablePatientId = cd.getStableId(); - Set sampleIdsForPatient = mapPatientIdSampleIds.get(stablePatientId); - for (String sampleId : sampleIdsForPatient) { - ClinicalData cdSample = new ClinicalData(cd); - cdSample.setStableId(sampleId); - sampleClinicalData.add(cdSample); - } - } - - return sampleClinicalData; - } - - public static List getSampleData(int cancerStudyId, Collection sampleIds, ClinicalAttribute attr) throws DaoException - { - List sampleIdsInt = new ArrayList(); - for (String sampleId : sampleIds) { - Sample _sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId); - if (_sample != null) { - sampleIdsInt.add(_sample.getInternalId()); - } - } - return getDataByInternalIds(cancerStudyId, SAMPLE_TABLE, sampleIdsInt, Collections.singletonList(attr.getAttrId())); - } - - public static List getSampleData(int cancerStudyId, Collection sampleIds) throws DaoException - { - List sampleIdsInt = new ArrayList(); - for (String sampleId : sampleIds) { - sampleIdsInt.add(DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId).getInternalId()); - } - return getDataByInternalIds(cancerStudyId, SAMPLE_TABLE, sampleIdsInt); - } - - public static List getData(String cancerStudyId, Collection patientIds, ClinicalAttribute attr) throws DaoException - { - int internalCancerStudyId = getInternalCancerStudyId(cancerStudyId); - List patientIdsInt = new ArrayList(); - for (String patientId : patientIds) { - patientIdsInt.add(DaoPatient.getPatientByCancerStudyAndPatientId(internalCancerStudyId, patientId).getInternalId()); - } - - return getDataByInternalIds(internalCancerStudyId, PATIENT_TABLE, patientIdsInt, Collections.singletonList(attr.getAttrId())); - } - - private static List getDataByInternalIds(int internalCancerStudyId, String table, List internalIds, Collection attributeIds) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - List clinicals = new ArrayList(); - - String sql = ("SELECT * FROM " + table + " WHERE `INTERNAL_ID` IN " + - "(" + generateIdsSql(internalIds) + ") " + - " AND ATTR_ID IN ('"+ StringUtils.join(attributeIds, "','")+"') "); - - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - while (rs.next()) { - clinicals.add(extract(table, internalCancerStudyId, rs)); - } - } catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - return clinicals; - } - - public static List getDataByAttributeIds(int internalCancerStudyId, Collection attributeIds) throws DaoException { - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - List clinicals = new ArrayList(); - - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - - pstmt = con.prepareStatement("SELECT * FROM clinical_patient WHERE" + - " ATTR_ID IN ('" + StringUtils.join(attributeIds, "','") +"') "); - - List patients = getPatientIdsByCancerStudy(internalCancerStudyId); - - rs = pstmt.executeQuery(); - while(rs.next()) { - Integer patientId = rs.getInt("INTERNAL_ID"); - if (patients.contains(patientId)) { - clinicals.add(extract(PATIENT_TABLE, internalCancerStudyId, rs)); - } - } - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - - return clinicals; - } - - private static ClinicalData extract(String table, int internalCancerStudyId, ResultSet rs) throws SQLException { - // get - String stableId = getStableIdFromInternalId(table, rs.getInt("INTERNAL_ID")); - return new ClinicalData(internalCancerStudyId, - stableId, - rs.getString("ATTR_ID"), - rs.getString("ATTR_VALUE")); - } - - private static String getStableIdFromInternalId(String table, int internalId) - { - if (table.equals(SAMPLE_TABLE)) { - return DaoSample.getSampleById(internalId).getStableId(); - } - else { - return DaoPatient.getPatientById(internalId).getStableId(); - } - } - - private static String generateIdsSql(Collection ids) { - return "'" + StringUtils.join(ids, "','") + "'"; - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - pstmt = con.prepareStatement("TRUNCATE TABLE clinical_patient"); - pstmt.executeUpdate(); - pstmt = con.prepareStatement("TRUNCATE TABLE clinical_sample"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - reCache(); - } - - /********************************************************* - * Previous DaoClinicalData class methods (accessors only) - *********************************************************/ - - /** - * Returns the survival data for the given patientSet, NOT necessarily in the - * same order as the patientSet. - * - * @param cancerStudyId: the cancerstudy internal id - * @param patientSet: set of patient ids - * @return - * @throws DaoException - */ - public static List getSurvivalData(int cancerStudyId, Collection patientSet) throws DaoException { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - List data = getData(cancerStudyId, patientSet); - Map> clinicalData = new LinkedHashMap>(); - for (ClinicalData cd : data) { - String patientId = cd.getStableId(); - Map msc = clinicalData.get(cd.getStableId()); - if (msc==null) { - msc = new HashMap(); - clinicalData.put(patientId, msc); - } - msc.put(cd.getAttrId(), cd); - } - - ArrayList toReturn = new ArrayList(); - for (Map.Entry> entry : clinicalData.entrySet()) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, entry.getKey()); - toReturn.add(new Patient(cancerStudy, patient.getStableId(), patient.getInternalId(), entry.getValue())); - } - return toReturn; - } - - /************************************************************** - * Previous DaoClinicalFreeForm class methods (accessors only) - *************************************************************/ - - public static List getDataSlice(int cancerStudyId, Collection attributeIds) throws DaoException { - - Map> mapAttrStableIdValue = new HashMap>(); - for (ClinicalData cd : getDataByAttributeIds(cancerStudyId, attributeIds)) { - - String attrId = cd.getAttrId(); - String value = cd.getAttrVal(); - String stableId = cd.getStableId(); - - if (value.isEmpty() || value.equals(ClinicalAttribute.NA)) { - continue; - } - - Map mapStableIdValue = mapAttrStableIdValue.get(attrId); - if (mapStableIdValue == null) { - mapStableIdValue = new HashMap(); - mapAttrStableIdValue.put(attrId, mapStableIdValue); - } - mapStableIdValue.put(stableId, value); - } - - List maps = new ArrayList(); - for (Map.Entry> entry : mapAttrStableIdValue.entrySet()) { - maps.add(new ClinicalParameterMap(entry.getKey(), entry.getValue())); - } - - return maps; - } - - public static HashSet getDistinctParameters(int cancerStudyId) throws DaoException { - - HashSet toReturn = new HashSet(); - for (ClinicalData clinicalData : DaoClinicalData.getData(cancerStudyId)) { - toReturn.add(clinicalData.getAttrId()); - } - - return toReturn; - } - public static HashSet getAllPatients(int cancerStudyId) throws DaoException { - - HashSet toReturn = new HashSet(); - for (ClinicalData clinicalData : getData(cancerStudyId)) { - toReturn.add(clinicalData.getStableId()); - } - - return toReturn; - } - public static List getDataByCancerStudy(int cancerStudyId) throws DaoException { - - return DaoClinicalData.getData(cancerStudyId); - } - - public static List getDataByPatientIds(int cancerStudyId, List patientIds) throws DaoException { - - return DaoClinicalData.getData(cancerStudyId, patientIds); - } - - public static List getPatientsByAttribute(int cancerStudy, String paramName, String paramValue) throws DaoException - { - List ids = getIdsByAttribute(cancerStudy, paramName, paramValue, PATIENT_TABLE); - return InternalIdUtil.getPatientsById(ids); - } - - public static List getSamplesByAttribute(int cancerStudy, String paramName, String paramValue) throws DaoException - { - List ids = getIdsByAttribute(cancerStudy, paramName, paramValue, SAMPLE_TABLE); - return InternalIdUtil.getSamplesById(ids); - } - - - private static List getIdsByAttribute(int cancerStudyId, String paramName, String paramValue, String tableName) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try{ - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - pstmt = con.prepareStatement ("SELECT INTERNAL_ID FROM `" + tableName + "`" - + " WHERE ATTR_ID=? AND ATTR_VALUE=?"); - pstmt.setString(1, paramName); - pstmt.setString(2, paramValue); - rs = pstmt.executeQuery(); - - List ids = new ArrayList(); - - while (rs.next()) - { - ids.add(rs.getInt("INTERNAL_ID")); - } - - return ids; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - } - - // get cancerType from the clinical_sample table to determine whether we have multiple cancer types - // for given samples - public static Map> getCancerTypeInfoBySamples(List samplesList) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try{ - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - pstmt = con.prepareStatement("select " + - "distinct ATTR_VALUE as attributeValue, " + - "ATTR_ID as attributeID from clinical_sample " + - "where ATTR_ID in (?, ?) and INTERNAL_ID in (" + - "select INTERNAL_ID from sample where STABLE_ID in ('" - + StringUtils.join(samplesList,"','")+"'))"); - pstmt.setString(1, ClinicalAttribute.CANCER_TYPE); - pstmt.setString(2, ClinicalAttribute.CANCER_TYPE_DETAILED); - rs = pstmt.executeQuery(); - - // create a map for the results - Map> result = new LinkedHashMap>(); - result.put( ClinicalAttribute.CANCER_TYPE, new HashSet()); - result.put( ClinicalAttribute.CANCER_TYPE_DETAILED, new HashSet()); - while (rs.next()) - { - result.get(rs.getString("attributeID")).add(rs.getString("attributeValue")); - } - - return result; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalEvent.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalEvent.java deleted file mode 100644 index 21722902701..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoClinicalEvent.java +++ /dev/null @@ -1,224 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.model.ClinicalEvent; - -/** - * - * @author gaoj - */ -public final class DaoClinicalEvent { - private DaoClinicalEvent() {} - - public static int addClinicalEvent(ClinicalEvent clinicalEvent) { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new IllegalStateException("Only buld load mode is allowed for importing clinical events"); - } - - MySQLbulkLoader.getMySQLbulkLoader("clinical_event").insertRecord( - Long.toString(clinicalEvent.getClinicalEventId()), - Integer.toString(clinicalEvent.getPatientId()), - clinicalEvent.getStartDate().toString(), - clinicalEvent.getStopDate()==null?null:clinicalEvent.getStopDate().toString(), - clinicalEvent.getEventType() - ); - return 1+addClinicalEventData(clinicalEvent); - } - - private static int addClinicalEventData(ClinicalEvent clinicalEvent) { - long eventId = clinicalEvent.getClinicalEventId(); - for (Map.Entry entry : clinicalEvent.getEventData().entrySet()) { - MySQLbulkLoader.getMySQLbulkLoader("clinical_event_data").insertRecord( - Long.toString(eventId), - entry.getKey(), - entry.getValue() - ); - } - return 1; - - } - - public static List getClinicalEvent(int patientId) throws DaoException { - return getClinicalEvent(patientId, null); - } - - public static List getClinicalEvent(int patientId, String eventType) throws DaoException { - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalEvent.class); - - // get events first - if (eventType==null) { - pstmt = con.prepareStatement("SELECT * FROM clinical_event WHERE PATIENT_ID=?"); - } else { - pstmt = con.prepareStatement("SELECT * FROM clinical_event WHERE PATIENT_ID=? AND EVENT_TYPE=?"); - } - pstmt.setInt(1, patientId); - if (eventType!=null) { - pstmt.setString(2, eventType); - } - - rs = pstmt.executeQuery(); - Map clinicalEvents = new HashMap(); - while (rs.next()) { - ClinicalEvent clinicalEvent = extractClinicalEvent(rs); - clinicalEvents.put(clinicalEvent.getClinicalEventId(), clinicalEvent); - } - - rs.close(); - - // get data then - if (!clinicalEvents.isEmpty()) { - pstmt = con.prepareStatement("SELECT * FROM clinical_event_data WHERE CLINICAL_EVENT_ID IN (" - + StringUtils.join(clinicalEvents.keySet(), ",") + ")"); - - rs = pstmt.executeQuery(); - while (rs.next()) { - long eventId = rs.getLong("CLINICAL_EVENT_ID"); - clinicalEvents.get(eventId).addEventDatum(rs.getString("KEY"), rs.getString("VALUE")); - } - } - - return new ArrayList(clinicalEvents.values()); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalEvent.class, con, pstmt, rs); - } - } - - private static ClinicalEvent extractClinicalEvent(ResultSet rs) throws SQLException { - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setClinicalEventId(rs.getLong("CLINICAL_EVENT_ID")); - clinicalEvent.setPatientId(rs.getInt("PATIENT_ID")); - clinicalEvent.setStartDate(JdbcUtil.readLongFromResultSet(rs, "START_DATE")); - clinicalEvent.setStopDate(JdbcUtil.readLongFromResultSet(rs, "STOP_DATE")); - clinicalEvent.setEventType(rs.getString("EVENT_TYPE")); - return clinicalEvent; - } - - public static long getLargestClinicalEventId() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalEvent.class); - pstmt = con.prepareStatement - ("SELECT MAX(`CLINICAL_EVENT_ID`) FROM `clinical_event`"); - rs = pstmt.executeQuery(); - return rs.next() ? rs.getLong(1) : 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalEvent.class, con, pstmt, rs); - } - } - - /** - * - * @param cancerStudyId - * @param caseId - * @return true if timeline data exist for the case - * @throws DaoException - */ - public static boolean timeEventsExistForPatient(int patientId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegment.class); - pstmt = con.prepareStatement("SELECT EXISTS(SELECT 1 FROM `clinical_event` WHERE `PATIENT_ID`=?)"); - pstmt.setInt(1, patientId); - rs = pstmt.executeQuery(); - return rs.next() && rs.getInt(1)==1; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } - - public static void deleteByCancerStudyId(int cancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalEvent.class); - - pstmt = con.prepareStatement("DELETE FROM clinical_event_data WHERE CLINICAL_EVENT_ID IN " - + "(SELECT CLINICAL_EVENT_ID FROM clinical_event WHERE PATIENT_ID in (SELECT INTERNAL_ID FROM patient where CANCER_STUDY_ID=?))"); - pstmt.setInt(1, cancerStudyId); - pstmt.executeUpdate(); - - pstmt = con.prepareStatement("DELETE FROM clinical_event WHERE PATIENT_ID in (SELECT INTERNAL_ID FROM patient where CANCER_STUDY_ID=?)"); - pstmt.setInt(1, cancerStudyId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalEvent.class, con, pstmt, rs); - } - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoClinicalData.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE clinical_event_data"); - pstmt.executeUpdate(); - pstmt = con.prepareStatement("TRUNCATE TABLE clinical_event"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoClinicalData.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCnaEvent.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCnaEvent.java deleted file mode 100644 index e7785d4f6c6..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCnaEvent.java +++ /dev/null @@ -1,356 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.model.CnaEvent; -import org.mskcc.cbio.portal.model.Sample; - -import java.sql.*; -import java.util.*; - -/** - * - * @author jgao - */ -public final class DaoCnaEvent { - private DaoCnaEvent() {} - - public static void addCaseCnaEvent(CnaEvent cnaEvent, boolean newCnaEvent) throws DaoException { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new DaoException("You have to turn on MySQLbulkLoader in order to insert sample_cna_event"); - } - else { - long eventId = cnaEvent.getEventId(); - if (newCnaEvent) { - eventId = addCnaEventDirectly(cnaEvent); - // update object based on new DB id (since this object is locally cached after this): - cnaEvent.setEventId(eventId); - } - - MySQLbulkLoader.getMySQLbulkLoader("sample_cna_event").insertRecord( - Long.toString(eventId), - Integer.toString(cnaEvent.getSampleId()), - Integer.toString(cnaEvent.getCnaProfileId()), - cnaEvent.getAnnotationJson() - ); - - if ((cnaEvent.getDriverFilter() != null - && !cnaEvent.getDriverFilter().isEmpty() - && !cnaEvent.getDriverFilter().toLowerCase().equals("na")) - || - (cnaEvent.getDriverTiersFilter() != null - && !cnaEvent.getDriverTiersFilter().isEmpty() - && !cnaEvent.getDriverTiersFilter().toLowerCase().equals("na")) - ) { - MySQLbulkLoader - .getMySQLbulkLoader("alteration_driver_annotation") - .insertRecord( - Long.toString(eventId), - Integer.toString(cnaEvent.getCnaProfileId()), - Integer.toString(cnaEvent.getSampleId()), - cnaEvent.getDriverFilter(), - cnaEvent.getDriverFilterAnnotation(), - cnaEvent.getDriverTiersFilter(), - cnaEvent.getDriverTiersFilterAnnotation() - ); - } - } - } - - /** - * Add new event directly and return the auto increment value. - * - * @param cnaEvent - * @return - * @throws DaoException - */ - private static long addCnaEventDirectly(CnaEvent cnaEvent) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCnaEvent.class); - pstmt = con.prepareStatement - ("INSERT INTO cna_event (" + - "`ENTREZ_GENE_ID`," + - "`ALTERATION` )" + - " VALUES(?,?)", Statement.RETURN_GENERATED_KEYS); - pstmt.setLong(1, cnaEvent.getEntrezGeneId()); - pstmt.setShort(2, cnaEvent.getAlteration().getCode()); - pstmt.executeUpdate(); - rs = pstmt.getGeneratedKeys(); - rs.next(); - long newId = rs.getLong(1); - return newId; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCnaEvent.class, con, pstmt, rs); - } - } - - public static Map> getSamplesWithAlterations( - Collection eventIds) throws DaoException { - return getSamplesWithAlterations(StringUtils.join(eventIds, ",")); - } - - public static Map> getSamplesWithAlterations(String concatEventIds) - throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCnaEvent.class); - String sql = "SELECT * FROM sample_cna_event" - + " WHERE `CNA_EVENT_ID` IN (" - + concatEventIds + ")"; - pstmt = con.prepareStatement(sql); - - Map> map = new HashMap> (); - rs = pstmt.executeQuery(); - while (rs.next()) { - Sample sample = DaoSample.getSampleById(rs.getInt("SAMPLE_ID")); - long eventId = rs.getLong("CNA_EVENT_ID"); - Set events = map.get(sample); - if (events == null) { - events = new HashSet(); - map.put(sample, events); - } - events.add(eventId); - } - return map; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCnaEvent.class, con, pstmt, rs); - } - } - - public static List getCnaEvents(List sampleIds, Collection entrezGeneIds , int profileId, Collection cnaLevels) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCnaEvent.class); - pstmt = con.prepareStatement - ("SELECT sample_cna_event.CNA_EVENT_ID," - + " sample_cna_event.SAMPLE_ID," - + " sample_cna_event.GENETIC_PROFILE_ID," - + " ENTREZ_GENE_ID," - + " ALTERATION," - + " alteration_driver_annotation.DRIVER_FILTER," - + " alteration_driver_annotation.DRIVER_FILTER_ANNOTATION," - + " alteration_driver_annotation.DRIVER_TIERS_FILTER," - + " alteration_driver_annotation.DRIVER_TIERS_FILTER_ANNOTATION" - + " FROM sample_cna_event" - + " LEFT JOIN alteration_driver_annotation ON" - + " sample_cna_event.GENETIC_PROFILE_ID = alteration_driver_annotation.GENETIC_PROFILE_ID" - + " and sample_cna_event.SAMPLE_ID = alteration_driver_annotation.SAMPLE_ID" - + " and sample_cna_event.CNA_EVENT_ID = alteration_driver_annotation.ALTERATION_EVENT_ID," - + " cna_event" - + " WHERE sample_cna_event.GENETIC_PROFILE_ID=?" - + " AND sample_cna_event.CNA_EVENT_ID=cna_event.CNA_EVENT_ID" - + (entrezGeneIds==null?"":" AND ENTREZ_GENE_ID IN(" + StringUtils.join(entrezGeneIds,",") + ")") - + " AND ALTERATION IN (" + StringUtils.join(cnaLevels,",") + ")" - + " AND sample_cna_event.SAMPLE_ID in ('"+StringUtils.join(sampleIds, "','")+"')"); - pstmt.setInt(1, profileId); - rs = pstmt.executeQuery(); - List events = new ArrayList(); - while (rs.next()) { - events.add(extractCnaEvent(rs)); - } - return events; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCnaEvent.class, con, pstmt, rs); - } - } - - private static CnaEvent extractCnaEvent(ResultSet rs) throws SQLException { - CnaEvent cnaEvent = new CnaEvent(rs.getInt("SAMPLE_ID"), - rs.getInt("GENETIC_PROFILE_ID"), - rs.getLong("ENTREZ_GENE_ID"), - rs.getShort("ALTERATION")); - cnaEvent.setEventId(rs.getLong("CNA_EVENT_ID")); - cnaEvent.setDriverFilter(rs.getString("DRIVER_FILTER")); - cnaEvent.setDriverFilterAnnotation(rs.getString("DRIVER_FILTER_ANNOTATION")); - cnaEvent.setDriverTiersFilter(rs.getString("DRIVER_TIERS_FILTER")); - cnaEvent.setDriverTiersFilterAnnotation(rs.getString("DRIVER_TIERS_FILTER_ANNOTATION")); - return cnaEvent; - } - - public static List getAllCnaEvents() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCnaEvent.class); - pstmt = con.prepareStatement - ("SELECT * FROM cna_event"); - rs = pstmt.executeQuery(); - List events = new ArrayList(); - while (rs.next()) { - try { - CnaEvent.Event event = new CnaEvent.Event(); - event.setEventId(rs.getLong("CNA_EVENT_ID")); - event.setEntrezGeneId(rs.getLong("ENTREZ_GENE_ID")); - event.setAlteration(rs.getShort("ALTERATION")); - events.add(event); - } catch (IllegalArgumentException e) { - e.printStackTrace(); - } - } - return events; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCnaEvent.class, con, pstmt, rs); - } - } - - public static Map> countSamplesWithCNAGenes( - Collection entrezGeneIds, int profileId) throws DaoException { - return countSamplesWithCNAGenes(StringUtils.join(entrezGeneIds, ","), profileId); - } - - public static Map> countSamplesWithCNAGenes( - String concatEntrezGeneIds, int profileId) throws DaoException { - if (concatEntrezGeneIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCnaEvent.class); - String sql = "SELECT `ENTREZ_GENE_ID`, `ALTERATION`, count(*)" - + " FROM sample_cna_event, cna_event" - + " WHERE `GENETIC_PROFILE_ID`=" + profileId - + " and sample_cna_event.`CNA_EVENT_ID`=cna_event.`CNA_EVENT_ID`" - + " and `ENTREZ_GENE_ID` IN (" - + concatEntrezGeneIds - + ") GROUP BY `ENTREZ_GENE_ID`, `ALTERATION`"; - pstmt = con.prepareStatement(sql); - - Map> map = new HashMap>(); - rs = pstmt.executeQuery(); - while (rs.next()) { - Long entrez = rs.getLong(1); - Integer alt = rs.getInt(2); - Integer count = rs.getInt(3); - Map mapII = map.get(entrez); - if (mapII==null) { - mapII = new HashMap(); - map.put(entrez, mapII); - } - mapII.put(alt, count); - } - return map; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCnaEvent.class, con, pstmt, rs); - } - } - - public static Map countSamplesWithCnaEvents(Collection eventIds, - int profileId) throws DaoException { - return countSamplesWithCnaEvents(StringUtils.join(eventIds, ","), profileId); - } - - public static Map countSamplesWithCnaEvents(String concatEventIds, - int profileId) throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCnaEvent.class); - String sql = "SELECT `CNA_EVENT_ID`, count(*) FROM sample_cna_event" - + " WHERE `GENETIC_PROFILE_ID`=" + profileId - + " and `CNA_EVENT_ID` IN (" - + concatEventIds - + ") GROUP BY `CNA_EVENT_ID`"; - pstmt = con.prepareStatement(sql); - - Map map = new HashMap(); - rs = pstmt.executeQuery(); - while (rs.next()) { - map.put(rs.getLong(1), rs.getInt(2)); - } - return map; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCnaEvent.class, con, pstmt, rs); - } - } - - public static Set getAlteredGenes(String concatEventIds) - throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptySet(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCnaEvent.class); - String sql = "SELECT DISTINCT ENTREZ_GENE_ID FROM cna_event " - + "WHERE CNA_EVENT_ID in (" - + concatEventIds - + ")"; - pstmt = con.prepareStatement(sql); - - Set set = new HashSet(); - rs = pstmt.executeQuery(); - while (rs.next()) { - set.add(rs.getLong(1)); - } - return set; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCnaEvent.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCoexpression.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCoexpression.java deleted file mode 100644 index 57adc14d596..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCoexpression.java +++ /dev/null @@ -1,93 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.*; - -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.model.Coexpression; - -/** - * - * @author jgao - */ -public class DaoCoexpression { - public static int addCoexpression(Coexpression coexpression) throws DaoException { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new DaoException("You have to turn on MySQLbulkLoader in order to insert Coexpression data"); - } else { - // use this code if bulk loading - // write to the temp file maintained by the MySQLbulkLoader - MySQLbulkLoader.getMySQLbulkLoader("coexpression").insertRecord( - Long.toString(coexpression.getGene1()), - Long.toString(coexpression.getGene2()), - Integer.toString(coexpression.getProfileId()), - Double.toString(coexpression.getPearson()), - Double.toString(coexpression.getSpearman())); - return 1; - } - } - - public static ArrayList getCoexpression(Collection queryGenes, int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCoexpression.class); - ArrayList result = new ArrayList(); - pstmt = con.prepareStatement("SELECT * FROM coexpression WHERE " + - "GENETIC_PROFILE_ID='" + geneticProfileId + "' AND " + - "(GENE_1 in ('" + StringUtils.join(queryGenes, "','") + "')" + " OR " + - " GENE_2 in ('" + StringUtils.join(queryGenes, "','") + "'));"); - rs = pstmt.executeQuery(); - while (rs.next()) { - int gene1Id = Integer.parseInt(rs.getString("GENE_1")); - int gene2Id = Integer.parseInt(rs.getString("GENE_2")); - //int geneticProfileId = Integer.parseInt(rs.getString("GENETIC_PROFILE_ID")); - float pearson = Float.parseFloat(rs.getString("PEARSON")); - float spearman = Float.parseFloat(rs.getString("SPEARMAN")); - result.add(new Coexpression(gene1Id, gene2Id, geneticProfileId, pearson, spearman)); - } - return result; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCoexpression.class, con, pstmt, rs); - } - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCopyNumberSegment.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCopyNumberSegment.java deleted file mode 100644 index a0113a44123..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCopyNumberSegment.java +++ /dev/null @@ -1,286 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; -import org.apache.commons.lang3.StringUtils; - -import java.sql.*; -import java.util.*; - -/** - * - * @author jgao - */ -public final class DaoCopyNumberSegment { - - private static final double FRACTION_GENOME_ALTERED_CUTOFF = 0.2; - private static final String FRACTION_GENOME_ALTERED_ATTR_ID = "FRACTION_GENOME_ALTERED"; - - private DaoCopyNumberSegment() {} - - public static int addCopyNumberSegment(CopyNumberSegment seg) throws DaoException { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new DaoException("You have to turn on MySQLbulkLoader in order to insert mutations"); - } else { - MySQLbulkLoader.getMySQLbulkLoader("copy_number_seg").insertRecord( - Long.toString(seg.getSegId()), - Integer.toString(seg.getCancerStudyId()), - Integer.toString(seg.getSampleId()), - seg.getChr(), - Long.toString(seg.getStart()), - Long.toString(seg.getEnd()), - Integer.toString(seg.getNumProbes()), - Double.toString(seg.getSegMean()) - ); - return 1; - } - } - - public static void createFractionGenomeAlteredClinicalData(int cancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegment.class); - pstmt = con.prepareStatement( - "SELECT `SAMPLE_ID`, IF((SELECT SUM(`END`-`START`) FROM copy_number_seg " + - "AS c2 WHERE c2.`CANCER_STUDY_ID` = c1.`CANCER_STUDY_ID` AND c2.`SAMPLE_ID` = c1.`SAMPLE_ID` AND " + - "ABS(c2.`SEGMENT_MEAN`) >= 0.2) IS NULL, 0, (SELECT SUM(`END`-`START`) FROM copy_number_seg " + - "AS c2 WHERE c2.`CANCER_STUDY_ID` = c1.`CANCER_STUDY_ID` AND c2.`SAMPLE_ID` = c1.`SAMPLE_ID` AND " + - "ABS(c2.`SEGMENT_MEAN`) >= 0.2) / SUM(`END`-`START`)) AS `VALUE` FROM `copy_number_seg` AS c1 , `cancer_study` " + - "WHERE c1.`CANCER_STUDY_ID` = cancer_study.`CANCER_STUDY_ID` AND cancer_study.`CANCER_STUDY_ID`=? " + - "GROUP BY cancer_study.`CANCER_STUDY_ID` , `SAMPLE_ID` HAVING SUM(`END`-`START`) > 0;"); - pstmt.setInt(1, cancerStudyId); - Map fractionGenomeAltereds = new HashMap(); - rs = pstmt.executeQuery(); - while (rs.next()) { - fractionGenomeAltereds.put(rs.getInt(1), rs.getString(2)); - } - - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum(FRACTION_GENOME_ALTERED_ATTR_ID, cancerStudyId); - if (clinicalAttribute == null) { - ClinicalAttribute attr = new ClinicalAttribute(FRACTION_GENOME_ALTERED_ATTR_ID, "Fraction Genome Altered", "Fraction Genome Altered", "NUMBER", - false, "20", cancerStudyId); - DaoClinicalAttributeMeta.addDatum(attr); - } - - for (Map.Entry fractionGenomeAltered : fractionGenomeAltereds.entrySet()) { - DaoClinicalData.addSampleDatum(fractionGenomeAltered.getKey(), FRACTION_GENOME_ALTERED_ATTR_ID, fractionGenomeAltered.getValue()); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } - - public static long getLargestId() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement - ("SELECT MAX(`SEG_ID`) FROM `copy_number_seg`"); - rs = pstmt.executeQuery(); - return rs.next() ? rs.getLong(1) : 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - public static List getSegmentForASample( - int sampleId, int cancerStudyId) throws DaoException { - return getSegmentForSamples(Collections.singleton(sampleId),cancerStudyId); - } - - public static List getSegmentForSamples( - Collection sampleIds, int cancerStudyId) throws DaoException { - if (sampleIds.isEmpty()) { - return Collections.emptyList(); - } - String concatSampleIds = "('"+StringUtils.join(sampleIds, "','")+"')"; - - List segs = new ArrayList(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegment.class); - pstmt = con.prepareStatement - ("SELECT * FROM copy_number_seg" - + " WHERE `SAMPLE_ID` IN "+ concatSampleIds - + " AND `CANCER_STUDY_ID`="+cancerStudyId); - rs = pstmt.executeQuery(); - while (rs.next()) { - CopyNumberSegment seg = new CopyNumberSegment( - rs.getInt("CANCER_STUDY_ID"), - rs.getInt("SAMPLE_ID"), - rs.getString("CHR"), - rs.getLong("START"), - rs.getLong("END"), - rs.getInt("NUM_PROBES"), - rs.getDouble("SEGMENT_MEAN")); - seg.setSegId(rs.getLong("SEG_ID")); - segs.add(seg); - } - return segs; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } - - public static double getCopyNumberActeredFraction(int sampleId, - int cancerStudyId, double cutoff) throws DaoException { - Double d = getCopyNumberActeredFraction(Collections.singleton(sampleId), cancerStudyId, cutoff) - .get(sampleId); - return d==null ? Double.NaN : d; - } - - public static Map getCopyNumberActeredFraction(Collection sampleIds, - int cancerStudyId, double cutoff) throws DaoException { - Map alteredLength = getCopyNumberAlteredLength(sampleIds, cancerStudyId, cutoff); - Map measuredLength = getCopyNumberAlteredLength(sampleIds, cancerStudyId, 0); - Map fraction = new HashMap(alteredLength.size()); - for (Integer sampleId : sampleIds) { - Long ml = measuredLength.get(sampleId); - if (ml==null || ml==0) { - continue; - } - Long al = alteredLength.get(sampleId); - if (al==null) { - al = (long) 0; - } - fraction.put(sampleId, 1.0*al/ml); - } - return fraction; - } - - private static Map getCopyNumberAlteredLength(Collection sampleIds, - int cancerStudyId, double cutoff) throws DaoException { - Map map = new HashMap(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - String sql; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegment.class); - if (cutoff>0) { - sql = "SELECT `SAMPLE_ID`, SUM(`END`-`START`)" - + " FROM `copy_number_seg`" - + " WHERE `CANCER_STUDY_ID`="+cancerStudyId - + " AND ABS(`SEGMENT_MEAN`)>=" + cutoff - + " AND `SAMPLE_ID` IN ('" + StringUtils.join(sampleIds,"','") +"')" - + " GROUP BY `SAMPLE_ID`"; - } else { - sql = "SELECT `SAMPLE_ID`, SUM(`END`-`START`)" - + " FROM `copy_number_seg`" - + " WHERE `CANCER_STUDY_ID`="+cancerStudyId - + " AND `SAMPLE_ID` IN ('" + StringUtils.join(sampleIds,"','") +"')" - + " GROUP BY `SAMPLE_ID`"; - } - - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - while (rs.next()) { - map.put(rs.getInt(1), rs.getLong(2)); - } - - return map; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } - - /** - * - * @param cancerStudyId - * @return true if segment data exist for the cancer study - * @throws DaoException - */ - public static boolean segmentDataExistForCancerStudy(int cancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegment.class); - pstmt = con.prepareStatement("SELECT EXISTS (SELECT 1 FROM `copy_number_seg` WHERE `CANCER_STUDY_ID`=?)"); - pstmt.setInt(1, cancerStudyId); - rs = pstmt.executeQuery(); - return rs.next() && rs.getInt(1)==1; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } - - /** - * - * @param cancerStudyId - * @param sampleId - * @return true if segment data exist for the case - * @throws DaoException - */ - public static boolean segmentDataExistForSample(int cancerStudyId, int sampleId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegment.class); - pstmt = con.prepareStatement("SELECT EXISTS(SELECT 1 FROM `copy_number_seg`" - + " WHERE `CANCER_STUDY_ID`=? AND `SAMPLE_ID`=?"); - pstmt.setInt(1, cancerStudyId); - pstmt.setInt(2, sampleId); - rs = pstmt.executeQuery(); - return rs.next() && rs.getInt(1)==1; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCopyNumberSegmentFile.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCopyNumberSegmentFile.java deleted file mode 100644 index ef0011a4c8a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCopyNumberSegmentFile.java +++ /dev/null @@ -1,116 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.CopyNumberSegmentFile; - -import org.apache.commons.lang3.StringUtils; - -import java.sql.*; -import java.util.*; - -public final class DaoCopyNumberSegmentFile { - private DaoCopyNumberSegmentFile() {} - - public static int addCopyNumberSegmentFile(CopyNumberSegmentFile copySegFile) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegmentFile.class); - pstmt = con.prepareStatement - ("INSERT INTO copy_number_seg_file (`CANCER_STUDY_ID`, `REFERENCE_GENOME_ID`, `DESCRIPTION`,`FILENAME`)" - + " VALUES (?,?,?,?)", Statement.RETURN_GENERATED_KEYS); - pstmt.setInt(1, copySegFile.cancerStudyId); - pstmt.setString(2, copySegFile.referenceGenomeId.toString()); - pstmt.setString(3, copySegFile.description); - pstmt.setString(4, copySegFile.filename); - pstmt.executeUpdate(); - rs = pstmt.getGeneratedKeys(); - if (rs.next()) { - return rs.getInt(1); - } - return -1; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } - - public static CopyNumberSegmentFile getCopyNumberSegmentFile(int cancerStudyId) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegmentFile.class); - pstmt = con.prepareStatement("SELECT * from copy_number_seg_file WHERE `CANCER_STUDY_ID` = ?"); - pstmt.setInt(1, cancerStudyId); - rs = pstmt.executeQuery(); - if (rs.next()) { - CopyNumberSegmentFile cnsf = new CopyNumberSegmentFile(); - cnsf.segFileId = rs.getInt("SEG_FILE_ID"); - cnsf.cancerStudyId = cancerStudyId; - cnsf.referenceGenomeId = CopyNumberSegmentFile.ReferenceGenomeId.valueOf(rs.getString("REFERENCE_GENOME_ID")); - cnsf.description = rs.getString("DESCRIPTION"); - cnsf.filename = rs.getString("FILENAME"); - return cnsf; - } - return null; - } - catch(SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoCopyNumberSegmentFile.class, con, pstmt, rs); - } - } - - public static void deleteAllRecords() throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegmentFile.class); - pstmt = con.prepareStatement("TRUNCATE TABLE copy_number_seg_file"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegmentFile.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCosmicData.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCosmicData.java deleted file mode 100644 index 24a8209e64b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoCosmicData.java +++ /dev/null @@ -1,188 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.Collection; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.model.CosmicMutationFrequency; -import org.mskcc.cbio.portal.model.ExtendedMutation; - -/** - * - * @author jgao - */ -public class DaoCosmicData { - public static int addCosmic(CosmicMutationFrequency cosmic) throws DaoException { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new DaoException("You have to turn on MySQLbulkLoader in order to insert mutations"); - } else { - - // use this code if bulk loading - // write to the temp file maintained by the MySQLbulkLoader - MySQLbulkLoader.getMySQLbulkLoader("cosmic_mutation").insertRecord( - cosmic.getId(), - cosmic.getChr(), - Long.toString(cosmic.getStartPosition()), - cosmic.getReferenceAllele(), - cosmic.getTumorSeqAllele(), - cosmic.getStrand(), - cosmic.getCds(), - Long.toString(cosmic.getEntrezGeneId()), - cosmic.getAminoAcidChange(), - Integer.toString(cosmic.getFrequency()), - cosmic.getKeyword()); - - return 1; - } - } - - /** - * - * @param mutations - * @return Map of event id to map of aa change to count - * @throws DaoException - */ - public static Map> getCosmicForMutationEvents( - List mutations) throws DaoException { - Set mutKeywords = new HashSet(); - for (ExtendedMutation mut : mutations) { - mutKeywords.add(mut.getKeyword()); - } - - Map> map = - DaoCosmicData.getCosmicDataByKeyword(mutKeywords); - Map> ret - = new HashMap>(map.size()); - for (ExtendedMutation mut : mutations) { - String keyword = mut.getKeyword(); - Set cmfs = filterTruncatingCosmicByPosition(mut, map.get(keyword)); - - if (cmfs==null || cmfs.isEmpty()) { - continue; - } - - ret.put(mut.getMutationEventId(), cmfs); - } - return ret; - } - - private static Set filterTruncatingCosmicByPosition( - ExtendedMutation mut, Set cmfs) { - if (mut.getKeyword()==null || !mut.getKeyword().endsWith("truncating") || cmfs==null) { - return cmfs; - } - - Set ret = new HashSet(); - Pattern p = Pattern.compile("[0-9]+"); - int mutPos = mut.getProteinPosStart(); - for (CosmicMutationFrequency cmf : cmfs) { - String aa = cmf.getAminoAcidChange(); - Matcher m = p.matcher(aa); - if (m.find()) { - int cmfPos = Integer.parseInt(m.group()); - if (mutPos==cmfPos) { - ret.add(cmf); - } - } - } - return ret; - } - - /** - * - * @param keywordS - * @return Map> - * @throws DaoException - */ - public static Map> getCosmicDataByKeyword(Collection keywordS) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCosmicData.class); - pstmt = con.prepareStatement("SELECT * FROM cosmic_mutation " - + " WHERE KEYWORD in ('" + StringUtils.join(keywordS, "','") + "')"); - rs = pstmt.executeQuery(); - Map> ret = new HashMap>(); - while (rs.next()) { - CosmicMutationFrequency cmf = extractCosmic(rs); - Set cmfs = ret.get(cmf.getKeyword()); - if (cmfs==null) { - cmfs = new HashSet(); - ret.put(cmf.getKeyword(), cmfs); - } - cmfs.add(cmf); - } - return ret; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCosmicData.class, con, pstmt, rs); - } - } - - private static CosmicMutationFrequency extractCosmic(ResultSet rs) throws SQLException { - String id = rs.getString("COSMIC_MUTATION_ID"); - long entrez = rs.getLong("ENTREZ_GENE_ID"); - String aa = rs.getString("PROTEIN_CHANGE"); - String keyword = rs.getString("KEYWORD"); - int count = rs.getInt("COUNT"); - return new CosmicMutationFrequency(id, entrez, aa, keyword, count); - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCosmicData.class); - pstmt = con.prepareStatement("TRUNCATE TABLE cosmic_mutation"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCosmicData.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoException.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoException.java deleted file mode 100644 index 32fe17dd6ee..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoException.java +++ /dev/null @@ -1,71 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -/** - * Exception Occurred while reading/writing data to database. - * - * @author Ethan Cerami - */ -public class DaoException extends Exception { - private final String msg; - - /** - * Constructor. - * - * @param throwable Throwable Object containing root cause. - */ - public DaoException(Throwable throwable) { - super(throwable); - this.msg = throwable.getMessage(); - } - - /** - * Constructor. - * - * @param msg Error Message. - */ - public DaoException(String msg) { - super(); - this.msg = msg; - } - - /** - * Gets Error Message. - * - * @return Error Message String.I - */ - public String getMessage() { - return msg; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGene.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGene.java deleted file mode 100644 index be8862eb881..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGene.java +++ /dev/null @@ -1,498 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.cbioportal.model.EntityType; -import org.cbioportal.model.GeneticEntity; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; - -/** - * Data Access Object to Gene Table. - * For faster access, consider using DaoGeneOptimized. - * - * @author Ethan Cerami. - */ -final class DaoGene { - - /** - * Private Constructor to enforce Singleton Pattern. - */ - private DaoGene() { - } - - private static int fakeEntrezId = 0; - private static synchronized int getNextFakeEntrezId() throws DaoException { - while (getGene(--fakeEntrezId)!=null); - return fakeEntrezId; - } - - public static synchronized int addGeneWithoutEntrezGeneId(CanonicalGene gene) throws DaoException { - CanonicalGene existingGene = getGene(gene.getHugoGeneSymbolAllCaps()); - gene.setEntrezGeneId(existingGene==null?getNextFakeEntrezId():existingGene.getEntrezGeneId()); - return addOrUpdateGene(gene); - } - - /** - * Update Gene Record in the Database. - */ - public static int updateGene(CanonicalGene gene) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - boolean setBulkLoadAtEnd = false; - try { - //this method only works well with bulk load off, especially - //when it is called in a process that may update a gene more than once - //(e.g. the ImportGeneData updates some of the fields based on one - // input file and other fields based on another input file): - setBulkLoadAtEnd = MySQLbulkLoader.isBulkLoad(); - MySQLbulkLoader.bulkLoadOff(); - - int rows = 0; - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("UPDATE gene SET `HUGO_GENE_SYMBOL`=?, `TYPE`=? WHERE `ENTREZ_GENE_ID`=?"); - pstmt.setString(1, gene.getHugoGeneSymbolAllCaps()); - pstmt.setString(2, gene.getType()); - pstmt.setLong(3, gene.getEntrezGeneId()); - rows += pstmt.executeUpdate(); - if (rows != 1) { - ProgressMonitor.logWarning("No change for " + gene.getEntrezGeneId() + " " + gene.getHugoGeneSymbolAllCaps() + "? Code " + rows); - } - - return rows; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - if (setBulkLoadAtEnd) { - //reset to original state: - MySQLbulkLoader.bulkLoadOn(); - } - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - -} - - /** - * Adds a new Gene Record to the Database OR updates the given gene object - * with the geneticEntityId found in the DB for this gene. - * If it is a new gene, it will generate a new genetic entity id and - * update the given CanonicalGene with the generated - * geneticEntityId. - * - * Adds a new Gene Record to the Database. - * - * @param gene Canonical Gene Object. - * @return number of records successfully added. - * @throws DaoException Database Error. - */ - public static int addOrUpdateGene(CanonicalGene gene) throws DaoException { - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - int rows = 0; - CanonicalGene existingGene = getGene(gene.getEntrezGeneId()); - if (existingGene == null) { - //new gene, so add genetic entity first: - GeneticEntity geneticEntity = DaoGeneticEntity.addNewGeneticEntity(new GeneticEntity(EntityType.GENE.name())); - int geneticEntityId = geneticEntity.getId(); - //update the Canonical gene as well: - gene.setGeneticEntityId(geneticEntityId); //TODO can we find a better way for this, to avoid this side effect? - //add gene, referring to this genetic entity - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("INSERT INTO gene (`GENETIC_ENTITY_ID`, `ENTREZ_GENE_ID`,`HUGO_GENE_SYMBOL`,`TYPE`) " - + "VALUES (?,?,?,?)"); - pstmt.setInt(1, geneticEntityId); - pstmt.setLong(2, gene.getEntrezGeneId()); - pstmt.setString(3, gene.getHugoGeneSymbolAllCaps()); - pstmt.setString(4, gene.getType()); - rows += pstmt.executeUpdate(); - - } else { - if (gene.getGeneticEntityId() == -1) { - //update the Canonical gene //TODO can we find a better way for this, to avoid this side effect? - gene.setGeneticEntityId(existingGene.getGeneticEntityId()); - } else { - //check correctness...normally this error would not occur unless there is an invalid use of CanonicalGene - if (gene.getGeneticEntityId() != existingGene.getGeneticEntityId()) - throw new RuntimeException("Unexpected error. Invalid genetic entity id for gene: " + gene.getHugoGeneSymbolAllCaps() + " (" + gene.getGeneticEntityId() + ")"); - } - } - - rows += addGeneAliases(gene); - - return rows; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Add gene_alias records. - * @param gene Canonical Gene Object. - * @return number of records successfully added. - * @throws DaoException Database Error. - */ - public static int addGeneAliases(CanonicalGene gene) throws DaoException { - if (MySQLbulkLoader.isBulkLoad()) { - // write to the temp file maintained by the MySQLbulkLoader - Set aliases = gene.getAliases(); - for (String alias : aliases) { - MySQLbulkLoader.getMySQLbulkLoader("gene_alias").insertRecord( - Long.toString(gene.getEntrezGeneId()), - alias); - - } - // return 1 because normal insert will return 1 if no error occurs - return 1; - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - Set aliases = gene.getAliases(); - Set existingAliases = getAliases(gene.getEntrezGeneId()); - int rows = 0; - for (String alias : aliases) { - if (!existingAliases.contains(alias)) { - pstmt = con.prepareStatement("INSERT INTO gene_alias " - + "(`ENTREZ_GENE_ID`,`GENE_ALIAS`) VALUES (?,?)"); - pstmt.setLong(1, gene.getEntrezGeneId()); - pstmt.setString(2, alias); - rows += pstmt.executeUpdate(); - } - } - - return rows; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Gets the Gene with the Specified Entrez Gene ID. - * For faster access, consider using DaoGeneOptimized. - * - * @param entrezGeneId Entrez Gene ID. - * @return Canonical Gene Object. - * @throws DaoException Database Error. - */ - private static CanonicalGene getGene(long entrezGeneId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("SELECT * FROM gene WHERE ENTREZ_GENE_ID = ?"); - pstmt.setLong(1, entrezGeneId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return extractGene(rs); - } else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Gets aliases for all genes. - * @return map from entrez gene id to a set of aliases. - * @throws DaoException Database Error. - */ - private static Set getAliases(long entrezGeneId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("SELECT * FROM gene_alias WHERE ENTREZ_GENE_ID = ?"); - pstmt.setLong(1, entrezGeneId); - rs = pstmt.executeQuery(); - Set aliases = new HashSet(); - while (rs.next()) { - aliases.add(rs.getString("GENE_ALIAS")); - } - return aliases; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - private static Map> getAllAliases() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("SELECT * FROM gene_alias"); - rs = pstmt.executeQuery(); - Map> map = new HashMap>(); - while (rs.next()) { - Long entrez = rs.getLong("ENTREZ_GENE_ID"); - Set aliases = map.get(entrez); - if (aliases==null) { - aliases = new HashSet(); - map.put(entrez, aliases); - } - aliases.add(rs.getString("GENE_ALIAS")); - } - return map; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Gets all Genes in the Database. - * - * @return ArrayList of Canonical Genes. - * @throws DaoException Database Error. - */ - public static ArrayList getAllGenes() throws DaoException { - Map> mapAliases = getAllAliases(); - ArrayList geneList = new ArrayList(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("SELECT * FROM gene"); - rs = pstmt.executeQuery(); - while (rs.next()) { - int geneticEntityId = rs.getInt("GENETIC_ENTITY_ID"); - long entrezGeneId = rs.getInt("ENTREZ_GENE_ID"); - Set aliases = mapAliases.get(entrezGeneId); - CanonicalGene gene = new CanonicalGene(geneticEntityId, entrezGeneId, - rs.getString("HUGO_GENE_SYMBOL"), aliases); - gene.setType(rs.getString("TYPE")); - geneList.add(gene); - } - return geneList; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Gets the Gene with the Specified HUGO Gene Symbol. - * For faster access, consider using DaoGeneOptimized. - * - * @param hugoGeneSymbol HUGO Gene Symbol. - * @return Canonical Gene Object. - * @throws DaoException Database Error. - */ - private static CanonicalGene getGene(String hugoGeneSymbol) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("SELECT * FROM gene WHERE HUGO_GENE_SYMBOL = ?"); - pstmt.setString(1, hugoGeneSymbol); - rs = pstmt.executeQuery(); - if (rs.next()) { - return extractGene(rs); - } else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - private static CanonicalGene extractGene(ResultSet rs) throws SQLException, DaoException { - int geneticEntityId = rs.getInt("GENETIC_ENTITY_ID"); - long entrezGeneId = rs.getInt("ENTREZ_GENE_ID"); - Set aliases = getAliases(entrezGeneId); - CanonicalGene gene = new CanonicalGene(geneticEntityId, entrezGeneId, - rs.getString("HUGO_GENE_SYMBOL"), aliases); - gene.setType(rs.getString("TYPE")); - - return gene; - } - - /** - * Gets the Number of Gene Records in the Database. - * - * @return number of gene records. - * @throws DaoException Database Error. - */ - public static int getCount() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("SELECT COUNT(*) FROM gene"); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Deletes the Gene Record that has the Entrez Gene ID in the Database. - * - * @param entrezGeneId - */ - public static void deleteGene(long entrezGeneId) throws DaoException { - deleteGeneAlias(entrezGeneId); - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement("DELETE FROM gene WHERE ENTREZ_GENE_ID=?"); - pstmt.setLong(1, entrezGeneId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Deletes the Gene Alias Record(s) that has/have the Entrez Gene ID in the Database. - * - * @param entrezGeneId - */ - public static void deleteGeneAlias(long entrezGeneId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement("DELETE FROM gene_alias WHERE ENTREZ_GENE_ID=?"); - pstmt.setLong(1, entrezGeneId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Deletes all Gene Records in the Database. - * - * @throws DaoException Database Error. - * - * @deprecated only used by deprecated code, so deprecating this as well. - */ - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE gene"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - deleteAllAliasRecords(); - } - - /** - * - * @throws DaoException - * - * @deprecated only used by deprecated code, so deprecating this as well. - */ - private static void deleteAllAliasRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement("TRUNCATE TABLE gene_alias"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneOptimized.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneOptimized.java deleted file mode 100644 index 1f58acb7bd9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneOptimized.java +++ /dev/null @@ -1,471 +0,0 @@ -/* - * Copyright (c) 2015 - 2019 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStreamReader; -import java.util.ArrayList; -import java.util.Collection; -import java.util.Collections; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -/** - * A Utility Class that speeds access to Gene Info. - * - * @author Ethan Cerami - */ -public class DaoGeneOptimized { - private static final String GENE_SYMBOL_DISAMBIGUATION_FILE = "/gene_symbol_disambiguation.txt"; - - private static final DaoGeneOptimized daoGeneOptimized = new DaoGeneOptimized(); - //nb: make sure any map is also cleared in clearCache() method below: - private final HashMap geneSymbolMap = new HashMap (); - private final HashMap entrezIdMap = new HashMap (); - private final HashMap geneticEntityMap = new HashMap(); - private final HashMap> geneAliasMap = new HashMap>(); - private final Map disambiguousGenes = new HashMap(); - - /** - * Private Constructor, to enforce singleton pattern. - * - * @throws DaoException Database Error. - */ - private DaoGeneOptimized () { - fillCache(); - } - - private synchronized void fillCache() { - try { - // Automatically populate hashmap upon init - ArrayList globalGeneList = DaoGene.getAllGenes(); - for (CanonicalGene currentGene: globalGeneList) { - cacheGene(currentGene); - } - } catch (DaoException e) { - e.printStackTrace(); - } - - try { - BufferedReader in = new BufferedReader(new InputStreamReader(getClass().getResourceAsStream(GENE_SYMBOL_DISAMBIGUATION_FILE))); - for (String line=in.readLine(); line!=null; line=in.readLine()) { - if (line.startsWith("#")) { - continue; - } - String[] parts = line.trim().split("\t",-1); - CanonicalGene gene = getGene(Long.parseLong(parts[1])); - if (gene==null) { - ProgressMonitor.logWarning(line+" in config file [resources" + GENE_SYMBOL_DISAMBIGUATION_FILE + - "]is not valid. You should either update this file or update the `gene` and `gene_alias` tables to fix this."); - } else { - disambiguousGenes.put(parts[0], gene); - } - } - in.close(); - } catch(IOException e) { - e.printStackTrace(); - } - } - - private void clearCache() { - geneSymbolMap.clear(); - entrezIdMap.clear(); - geneticEntityMap.clear(); - geneAliasMap.clear(); - disambiguousGenes.clear(); - } - - /** - * Clear and fill cache again. Useful for unit tests and - * for the Import procedure to update the genes table, clearing the - * cache without the need to restart the webserver. - */ - public synchronized void reCache() { - clearCache(); - fillCache(); - } - - /** - * Adds a new Gene Record to the Database. If the Entrez Gene ID is negative, - * a fake Entrez Gene ID will be assigned. - * @param gene Canonical Gene Object. - * @return number of records successfully added. - * @throws DaoException Database Error. - */ - public int addGene(CanonicalGene gene) throws DaoException { - int ret; - if (gene.getEntrezGeneId()>0) { - ret = DaoGene.addOrUpdateGene(gene); - } else { - ret = DaoGene.addGeneWithoutEntrezGeneId(gene); - } - //only overwrite cache if ..? - cacheGene(gene); - return ret; - } - - /** - * Update Gene Record in the Database. It will also replace this - * gene's aliases with the ones found in the given gene object. - */ - public int updateGene(CanonicalGene gene) throws DaoException { - int ret = DaoGene.updateGene(gene); - //recache: - cacheGene(gene); - return ret; - } - - public void deleteGene(CanonicalGene gene) throws DaoException { - DaoGene.deleteGene(gene.getEntrezGeneId()); - geneSymbolMap.remove(gene.getHugoGeneSymbolAllCaps()); - for (String alias : gene.getAliases()) { - String aliasUp = alias.toUpperCase(); - List genes = geneAliasMap.get(aliasUp); - genes.remove(gene); - if (genes.isEmpty()) { - geneAliasMap.remove(aliasUp); - } - } - } - - private void cacheGene(CanonicalGene gene) { - geneSymbolMap.put(gene.getHugoGeneSymbolAllCaps(), gene); - entrezIdMap.put(gene.getEntrezGeneId(), gene); - geneticEntityMap.put(gene.getGeneticEntityId(), gene); - - for (String alias : gene.getAliases()) { - String aliasUp = alias.toUpperCase(); - List genes = geneAliasMap.get(aliasUp); - if (genes==null) { - genes = new ArrayList(); - geneAliasMap.put(aliasUp, genes); - } - genes.add(gene); - } - } - - /** - * Gets Global Singleton Instance. - * - * @return DaoGeneOptimized Singleton. - * @throws DaoException Database Error. - */ - public static DaoGeneOptimized getInstance() { - return daoGeneOptimized; - } - - /** - * Return geneticEntityId from cache for given entrezGeneId - * - * @param entrezGeneId - * @return - */ - public static int getGeneticEntityId(long entrezGeneId) { - //get entity id from cache: - CanonicalGene gene = daoGeneOptimized.getGene(entrezGeneId); - if (gene != null) { - return gene.getGeneticEntityId(); - } - else { - throw new RuntimeException("Invalid entrezGeneId symbol. Not found in cache: " + entrezGeneId); - } - } - - /** - * Return entrezGeneId from cache for given geneticEntityId - * - * @param geneticEntityId - * @return - */ - public static long getEntrezGeneId(int geneticEntityId) { - //get entity id from cache: - CanonicalGene gene = daoGeneOptimized.getGeneByEntityId(geneticEntityId); - //since not every genetic entity will be a gene, this could be null (but would - //be a programming error elsewhere, so throw exception): - if (gene == null) { - throw new RuntimeException("Genetic entity was not found in gene cache: " + geneticEntityId); - } - - return daoGeneOptimized.getGeneByEntityId(geneticEntityId).getEntrezGeneId(); - } - - /** - * Gets Gene by HUGO Gene Symbol. - * - * @param hugoGeneSymbol HUGO Gene Symbol. - * @return Canonical Gene Object. - */ - public CanonicalGene getGene(String hugoGeneSymbol) { - return geneSymbolMap.get(hugoGeneSymbol.toUpperCase()); - } - - /** - * Looks for a Gene where HUGO Gene Symbol or an alias matches the given symbol. - * - * @param geneSymbol: HUGO Gene Symbol or an alias - * @param searchInAliases: set to true if this method should search for a match in this.geneAliasMap - * in case a matching hugo symbol cannot be found in this.geneSymbolMap - * - * @return - */ - public List getGene(String geneSymbol, boolean searchInAliases) { - CanonicalGene gene = getGene(geneSymbol); - if (gene != null) { - return Collections.singletonList(gene); - } - if (searchInAliases) { - return getGenesForAlias(geneSymbol); - } - return Collections.emptyList(); - } - - - /** - * Looks for all Gene records linked to a gene symbol in the gene_alias table. - * - * @param geneSymbol: HUGO Gene Symbol (alias) - * - * @return empty list if there are no linked Genes, or a unmodifiable list of linked genes - */ - public List getGenesForAlias(String geneSymbol) { - List genes = geneAliasMap.get(geneSymbol.toUpperCase()); - if (genes != null) { - return Collections.unmodifiableList(genes); - } - return Collections.emptyList(); - } - - /** - * Gets Gene By Entrez Gene ID. - * - * @param entrezId Entrez Gene ID. - * @return Canonical Gene Object. - */ - public CanonicalGene getGene(long entrezId) { - return entrezIdMap.get(entrezId); - } - - /** - * Gets Gene By Entrez Gene ID. - * - * @param geneticEntityId Gene Entity ID. - * @return Canonical Gene Object. - */ - public CanonicalGene getGeneByEntityId(int geneticEntityId) { - return geneticEntityMap.get(geneticEntityId); - } - - /** - * Look for genes with a specific ID. First look for genes with the specific - * Entrez Gene ID, if found return this gene; then for HUGO symbol, if found, - * return this gene; and lastly for aliases, if found, return a list of - * matched genes (could be more than one). If nothing matches, return an - * empty list. - * @param geneId an Entrez Gene ID or HUGO symbol or gene alias - * @return A list of genes that match, an empty list if no match. - */ - public List guessGene(String geneId) { - return guessGene(geneId, null); - } - - /** - * Look for genes with a specific ID on a chr. First look for genes with the specific - * Entrez Gene ID, if found return this gene; then for HUGO symbol, if found, - * return this gene; and lastly for aliases, if found, return a list of - * matched genes (could be more than one). If chr is not null, use that to match too. - * If nothing matches, return an empty list. - * @param geneId an Entrez Gene ID or HUGO symbol or gene alias - * @param chr chromosome - * @return A list of genes that match, an empty list if no match. - */ - public List guessGene(String geneId, String chr) { - if (geneId==null) { - return Collections.emptyList(); - } - - CanonicalGene gene; - if (geneId.matches("[0-9]+")) { // likely to be a entrez gene id - gene = getGene(Integer.parseInt(geneId)); - if (gene!=null) { - return Collections.singletonList(gene); - } - } - - gene = getGene(geneId); // HUGO gene symbol - if (gene!=null) { - return Collections.singletonList(gene); - } - - List genes = geneAliasMap.get(geneId.toUpperCase()); - if (genes!=null) { - return Collections.unmodifiableList(genes); - } - return Collections.emptyList(); - } - - - private static Map validChrValues = null; - public static String normalizeChr(String strChr) { - if (strChr==null) { - return null; - } - - if (validChrValues==null) { - validChrValues = new HashMap(); - for (int lc = 1; lc<=24; lc++) { - validChrValues.put(Integer.toString(lc),Integer.toString(lc)); - validChrValues.put("CHR" + Integer.toString(lc),Integer.toString(lc)); - } - validChrValues.put("X","23"); - validChrValues.put("CHRX","23"); - validChrValues.put("Y","24"); - validChrValues.put("CHRY","24"); - validChrValues.put("NA","NA"); - validChrValues.put("MT","MT"); // mitochondria - } - - return validChrValues.get(strChr); - } - - private static String getChrFromCytoband(String cytoband) { - if (cytoband==null) { - return null; - } - - if (cytoband.startsWith("X")) { - return "23"; - } - - if (cytoband.startsWith("Y")) { - return "24"; - } - - Pattern p = Pattern.compile("([0-9]+).*"); - Matcher m = p.matcher(cytoband); - if (m.find()) { - return m.group(1); - } - - return null; - } - - /** - * Look for gene that can be non-ambiguously determined. - * @param geneId an Entrez Gene ID or HUGO symbol or gene alias - * @return a gene that can be non-ambiguously determined, or null if cannot. - */ - public CanonicalGene getNonAmbiguousGene(String geneId) { - return getNonAmbiguousGene(geneId, true); - } - - /** - * Look for gene that can be non-ambiguously determined. - * @param geneId an Entrez Gene ID or HUGO symbol or gene alias - * @param chr chromosome - * @return a gene that can be non-ambiguously determined, or null if cannot. - */ - public CanonicalGene getNonAmbiguousGene(String geneId, String chr) { - return getNonAmbiguousGene(geneId, true); - } - - /** - * Look for gene that can be non-ambiguously determined - * @param geneId an Entrez Gene ID or HUGO symbol or gene alias - * @param issueWarning if true and gene is not ambiguous, - * print all the Entrez Ids corresponding to the geneId provided - * @return a gene that can be non-ambiguously determined, or null if cannot. - */ - public CanonicalGene getNonAmbiguousGene(String geneId, boolean issueWarning) { - List genes = guessGene(geneId); - if (genes.isEmpty()) { - return null; - } - - if (genes.size()==1) { - return genes.get(0); - } - - if (disambiguousGenes.containsKey(geneId)) { - return disambiguousGenes.get(geneId); - } - if (issueWarning) { - StringBuilder sb = new StringBuilder("Ambiguous alias "); - sb.append(geneId); - sb.append(": corresponding entrez ids of "); - for (CanonicalGene gene : genes) { - sb.append(gene.getEntrezGeneId()); - sb.append(","); - } - sb.deleteCharAt(sb.length()-1); - - ProgressMonitor.logWarning(sb.toString()); - } - return null; - - } - - public Set getEntrezGeneIds(Collection genes) { - Set entrezGeneIds = new HashSet(); - for (CanonicalGene gene : genes) { - entrezGeneIds.add(gene.getEntrezGeneId()); - } - return entrezGeneIds; - } - - /** - * Gets an ArrayList of All Genes. - * @return Array List of All Genes. - */ - public ArrayList getAllGenes () { - return new ArrayList(entrezIdMap.values()); - } - - /** - * Deletes all Gene Records in the Database. - * @throws DaoException Database Error. - * - * @deprecated only used by deprecated code, so deprecating this as well. - */ - public void deleteAllRecords() throws DaoException { - DaoGene.deleteAllRecords(); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenePanel.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenePanel.java deleted file mode 100644 index 87277d2aba5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenePanel.java +++ /dev/null @@ -1,300 +0,0 @@ -/* - * Copyright (c) 2017 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import java.util.*; -import java.util.stream.Collectors; - -import org.mskcc.cbio.portal.model.*; - -import static org.mskcc.cbio.portal.util.GenePanelUtil.*; - -/** - * @author heinsz - */ -public class DaoGenePanel { - private static final Map genePanelMap = initMap(); - - /** - * @param stableId Name of the gene panel, e.g. TESTPANEL1 - * @return Gets a gene panel based on its stable id in the database. - */ - public static GenePanel getGenePanelByStableId(String stableId) { - return genePanelMap.get(stableId); - } - - private static Map initMap() { - Map genePanelMap = null; - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGenePanel.class); - pstmt = con.prepareStatement("SELECT * FROM gene_panel"); - rs = pstmt.executeQuery(); - genePanelMap = extractGenePanelMap(rs); - } catch (SQLException | DaoException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoGenePanel.class, con, pstmt, rs); - } - return genePanelMap; - } - - private static Map extractGenePanelMap(ResultSet rs) throws DaoException { - Map genePanelMap = new HashMap<>(); - try { - while (rs.next()) { - GenePanel gp = new GenePanel(); - gp.setInternalId(rs.getInt("INTERNAL_ID")); - gp.setStableId(rs.getString("STABLE_ID")); - gp.setDescription(rs.getString("DESCRIPTION")); - gp.setGenes(extractGenePanelGenes(gp.getInternalId())); - genePanelMap.put(gp.getStableId(), gp); - } - } catch (SQLException e) { - throw new DaoException(e); - } - return genePanelMap; - } - - private static Set extractGenePanelGenes(Integer genePanelId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - HashSet toReturn = new HashSet<>(); - try { - con = JdbcUtil.getDbConnection(DaoGenePanel.class); - pstmt = con.prepareStatement("SELECT * FROM gene_panel_list where INTERNAL_ID = ?"); - pstmt.setInt(1, genePanelId); - rs = pstmt.executeQuery(); - DaoGeneOptimized daoGeneOpt = DaoGeneOptimized.getInstance(); - while (rs.next()) { - CanonicalGene gene = daoGeneOpt.getGene(rs.getLong(2)); - toReturn.add(gene); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenePanel.class, con, pstmt, rs); - } - return toReturn; - } - - /** - * Adds a new gene panel to the database. - * - * @param stableId Name of the gene panel, e.g. TESTPANEL1 - * @param description Description for the gene panel - * @param canonicalGenes Genes to be added to the database - * @throws DaoException - */ - public static void addGenePanel(String stableId, String description, Set canonicalGenes) - throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - if (stableId == null) { - throw new DaoException("Gene Panel stable ID cannot be null."); - } - if (canonicalGenes == null || canonicalGenes.isEmpty()) { - throw new DaoException("Gene Panel gene list cannot be null or empty."); - } - - try { - con = JdbcUtil.getDbConnection(DaoGenePanel.class); - pstmt = con.prepareStatement("INSERT INTO gene_panel (`STABLE_ID`, `DESCRIPTION`) VALUES (?,?)", - Statement.RETURN_GENERATED_KEYS); - pstmt.setString(1, stableId); - pstmt.setString(2, description); - pstmt.executeUpdate(); - rs = pstmt.getGeneratedKeys(); - if (rs.next()) { - addGenePanelGeneList(rs.getInt(1), canonicalGenes); - // add panel to class map - GenePanel gp = new GenePanel(); - gp.setInternalId(rs.getInt(1)); - gp.setStableId(stableId); - gp.setDescription(description); - gp.setGenes(canonicalGenes); - genePanelMap.put(stableId, gp); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenePanel.class, con, pstmt, rs); - } - } - - private static void addGenePanelGeneList(Integer internalId, Set canonicalGenes) - throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - try { - con = JdbcUtil.getDbConnection(DaoGenePanel.class); - for (CanonicalGene canonicalGene : canonicalGenes) { - pstmt = con.prepareStatement("INSERT INTO gene_panel_list (`INTERNAL_ID`, `GENE_ID`) VALUES (?,?)"); - pstmt.setInt(1, internalId); - pstmt.setLong(2, canonicalGene.getEntrezGeneId()); - pstmt.executeUpdate(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenePanel.class, con, pstmt, null); - } - } - - /** - * Deletes an existing gene panel in the database. - * - * @param genePanel - * @throws DaoException - */ - public static void deleteGenePanel(GenePanel genePanel) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - try { - con = JdbcUtil.getDbConnection(DaoGenePanel.class); - pstmt = con.prepareStatement("DELETE from gene_panel WHERE INTERNAL_ID = ?"); - pstmt.setInt(1, genePanel.getInternalId()); - pstmt.executeUpdate(); - genePanelMap.remove(genePanel.getStableId()); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenePanel.class, con, pstmt, null); - } - } - - /** - * Updates an existing gene panel to the incoming set of genes. - * - * @param genePanel - * @param incoming - * @throws DaoException - */ - public static void updateGenePanel(GenePanel genePanel, Set incoming) throws DaoException { - String stableId = genePanel.getStableId(); - Integer internalId = genePanel.getInternalId(); - - if (stableId == null) { - throw new DaoException("Gene Panel stable ID cannot be null."); - } - - updateGenePanelGeneList(internalId, incoming); - } - - /** - * Prints the genes to be added and removed from a gene panel in the database. - * - * @param genePanel - * @param incoming - * @throws DaoException - */ - public static void updatePreview(GenePanel genePanel, Set incoming) throws DaoException { - Pair pair = getAddRemove(incoming, extractGenePanelGenes(genePanel.getInternalId())); - String add = pair.add.stream() - .map(CanonicalGene::toString) - .collect(Collectors.joining(", ")); - String remove = pair.remove.stream() - .map(CanonicalGene::toString) - .collect(Collectors.joining(", ")); - - System.out.printf("ADD: %s\n", add); - System.out.printf("REMOVE: %s\n", remove); - } - - private static boolean genePanelExists(Integer internalId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - Map genePanelMap; - - try { - con = JdbcUtil.getDbConnection(DaoGenePanel.class); - pstmt = con.prepareStatement("SELECT * FROM gene_panel WHERE internal_id = ?"); - pstmt.setInt(1, internalId); - rs = pstmt.executeQuery(); - genePanelMap = extractGenePanelMap(rs); - return !genePanelMap.isEmpty(); - } catch (SQLException e) { - return false; - } finally { - JdbcUtil.closeAll(DaoGenePanel.class, con, pstmt, rs); - } - } - - /** - * Inserts and deletes genes from a gene panel represented by an internalId in - * the database. - */ - private static void updateGenePanelGeneList(Integer internalId, Set incoming) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - if (!genePanelExists(internalId)) { - System.out.println("Gene panel does not exist in gene_panel, exiting"); - return; - } - - con = JdbcUtil.getDbConnection(DaoGenePanel.class); - Pair pair = getAddRemove(incoming, extractGenePanelGenes(internalId)); - Set toAdd = pair.add; - Set toRemove = pair.remove; - - // Add and remove genes from specified gene panel - for (CanonicalGene canonicalGene : toAdd) { - pstmt = con.prepareStatement("INSERT INTO gene_panel_list (`INTERNAL_ID`, `GENE_ID`) VALUES (?,?)"); - pstmt.setInt(1, internalId); - pstmt.setLong(2, canonicalGene.getEntrezGeneId()); - pstmt.executeUpdate(); - } - for (CanonicalGene canonicalGene : toRemove) { - pstmt = con.prepareStatement("DELETE FROM gene_panel_list WHERE internal_id=? AND gene_id=?"); - pstmt.setInt(1, internalId); - pstmt.setLong(2, canonicalGene.getEntrezGeneId()); - pstmt.executeUpdate(); - } - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenePanel.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenericAssay.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenericAssay.java deleted file mode 100644 index 6a52b5237d0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenericAssay.java +++ /dev/null @@ -1,188 +0,0 @@ -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import java.util.*; -import java.util.stream.Collectors; - -import org.apache.commons.lang3.tuple.Pair; -import org.cbioportal.model.GenericEntityProperty; -import org.cbioportal.model.GeneticEntity; -import org.cbioportal.model.meta.GenericAssayMeta; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.GeneticProfile; - -public class DaoGenericAssay { - - public static void setGenericEntityProperty(Integer entityId, String name, String value) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - pstmt = con.prepareStatement("INSERT INTO generic_entity_properties (`GENETIC_ENTITY_ID`, `NAME`, `VALUE`) " - + "VALUES(?,?,?)"); - if (entityId == null) { - return; - } - pstmt.setInt(1, entityId); - pstmt.setString(2, name); - pstmt.setString(3, value); - pstmt.executeUpdate(); - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, pstmt, rs); - } - } - - public static void setGenericEntityPropertiesUsingBatch(List properties) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - final int batchSize = 1000; - - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - pstmt = con.prepareStatement("INSERT INTO generic_entity_properties (`GENETIC_ENTITY_ID`, `NAME`, `VALUE`) " - + "VALUES(?,?,?)"); - if (properties.size() == 0) { - return; - } - - // batch execution - int count = 0; - boolean preservedAutoCommitMode = con.getAutoCommit(); - con.setAutoCommit(false); - for (GenericEntityProperty property : properties) { - pstmt.setInt(1, property.getEntityId()); - pstmt.setString(2, property.getName()); - pstmt.setString(3, property.getValue()); - pstmt.addBatch(); - if (++count % batchSize == 0) { - pstmt.executeBatch(); - } - } - // insert remaining records - pstmt.executeBatch(); - con.setAutoCommit(preservedAutoCommitMode); - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, pstmt, rs); - } - } - - public static GenericAssayMeta getGenericAssayMetaByStableId(String stableId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - pstmt = con.prepareStatement("SELECT * FROM generic_entity_properties WHERE GENETIC_ENTITY_ID=?"); - GeneticEntity entity = DaoGeneticEntity.getGeneticEntityByStableId(stableId); - if (entity == null) { - return null; - } - pstmt.setInt(1, entity.getId()); - rs = pstmt.executeQuery(); - - HashMap map = new HashMap<>(); - while(rs.next()) { - map.put(rs.getString("NAME"), rs.getString("VALUE")); - } - GenericAssayMeta genericAssayMeta = new GenericAssayMeta(entity.getEntityType(), entity.getStableId(), map); - return genericAssayMeta; - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, pstmt, rs); - } - return null; - } - - public static void deleteGenericEntityPropertiesByEntityId(Integer entityId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - pstmt = con.prepareStatement("DELETE FROM generic_entity_properties WHERE GENETIC_ENTITY_ID=?"); - if (entityId == null) { - return; - } - pstmt.setInt(1, entityId); - pstmt.executeUpdate(); - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, pstmt, rs); - } - } - - public static boolean geneticEntitiesOnlyExistInSingleStudy(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - pstmt = con.prepareStatement("SELECT DISTINCT CANCER_STUDY_ID FROM genetic_profile WHERE GENETIC_PROFILE_ID IN (SELECT GENETIC_PROFILE_ID FROM genetic_alteration WHERE GENETIC_ENTITY_ID IN (SELECT GENETIC_ENTITY_ID FROM genetic_alteration WHERE GENETIC_PROFILE_ID=?))"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - - List studies = new ArrayList(); - while(rs.next()) { - studies.add(rs.getInt("CANCER_STUDY_ID")); - } - // check if entities only exist in single study - return studies.size() == 1; - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, pstmt, rs); - } - // do not update if there is an error - return false; - } - - /** - * delete generic assay meta records if meta is not shared with other studies - * check and delete generic assay meta records profile by profile - * @throws DaoException - */ - public static void checkAndDeleteGenericAssayMetaInStudy(int internalCancerStudyId) throws DaoException { - List geneticProfiles = DaoGeneticProfile.getAllGeneticProfiles(internalCancerStudyId); - List genericAssayProfiles = geneticProfiles.stream().filter(profile -> profile.getGeneticAlterationType() == GeneticAlterationType.GENERIC_ASSAY).collect(Collectors.toList()); - List> deleteGenericAssayStatements = new ArrayList<>(); - - for (GeneticProfile profile : genericAssayProfiles) { - if (DaoGenericAssay.geneticEntitiesOnlyExistInSingleStudy(profile.getGeneticProfileId())) { - deleteGenericAssayStatements.add(Pair.of(profile.getGeneticProfileId(), "DELETE FROM generic_entity_properties WHERE GENETIC_ENTITY_ID IN (SELECT GENETIC_ENTITY_ID FROM genetic_alteration WHERE GENETIC_PROFILE_ID=?)")); - deleteGenericAssayStatements.add(Pair.of(profile.getGeneticProfileId(), "DELETE FROM genetic_entity WHERE ID IN (SELECT GENETIC_ENTITY_ID FROM genetic_alteration WHERE GENETIC_PROFILE_ID=?)")); - } - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoCancerStudy.class); - for (Pair profileIdAndStatementPair : deleteGenericAssayStatements) { - pstmt = con.prepareStatement(profileIdAndStatementPair.getValue()); - if (profileIdAndStatementPair.getValue().contains("?")) { - pstmt.setInt(1, profileIdAndStatementPair.getKey()); - } - pstmt.executeUpdate(); - pstmt.close(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCancerStudy.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneset.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneset.java deleted file mode 100644 index 6a751e7ea94..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneset.java +++ /dev/null @@ -1,437 +0,0 @@ -/* - * Copyright (c) 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author ochoaa - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.dao; - -import org.cbioportal.model.EntityType; -import org.cbioportal.model.GeneticEntity; -import org.mskcc.cbio.portal.dao.DaoGenesetHierarchyNode; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Geneset; -import org.mskcc.cbio.portal.scripts.ImportGenesetData; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.sql.*; -import java.util.*; -import java.util.stream.Collectors; - -public class DaoGeneset { - - private DaoGeneset() { - } - - /** - * Adds a new Geneset record to the database. - * @param geneset - * @return number of records successfully added - * @throws DaoException - */ - public static Geneset addGeneset(Geneset geneset) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - // new geneset so add genetic entity first - GeneticEntity geneticEntity = DaoGeneticEntity.addNewGeneticEntity(new GeneticEntity(EntityType.GENESET.name())); - int geneticEntityId = geneticEntity.getId(); - geneset.setGeneticEntityId(geneticEntityId); - - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement("INSERT INTO geneset " - + "(`GENETIC_ENTITY_ID`, `EXTERNAL_ID`, `NAME`, `DESCRIPTION`, `REF_LINK`) " - + "VALUES(?,?,?,?,?)", Statement.RETURN_GENERATED_KEYS); - pstmt.setInt(1, geneset.getGeneticEntityId()); - pstmt.setString(2, geneset.getExternalId()); - pstmt.setString(3, geneset.getName()); - pstmt.setString(4, geneset.getDescription()); - pstmt.setString(5, geneset.getRefLink()); - pstmt.executeUpdate(); - //get the auto generated key: - rs = pstmt.getGeneratedKeys(); - rs.next(); - int newId = rs.getInt(1); - geneset.setId(newId); - - return geneset; - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Prepares a list of Gene records from Geneset object to be added to database via MySQLbulkLoader. - * @param geneset - * @return number of records where entrez gene id is found in db - */ - public static int addGenesetGenesToBulkLoader(Geneset geneset) { - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - Set entrezGeneIds = geneset.getGenesetGeneIds(); - int rows = 0; - for (Long entrezGeneId : entrezGeneIds) { - //validate: - if (daoGeneOptimized.getGene(entrezGeneId.intValue()) == null) { - //throw error with clear message: - ProgressMonitor.logWarning(geneset.getExternalId() + " contains Entrez gene ID not found in local gene table: " + entrezGeneId); - ImportGenesetData.skippedGenes++; - continue; - } - // use this code if bulk loading - // write to the temp file maintained by the MySQLbulkLoader - MySQLbulkLoader.getMySQLbulkLoader("geneset_gene").insertRecord( - Integer.toString(geneset.getId()), - Long.toString(entrezGeneId)); - rows ++; - } - return rows; - } - - /** - * Given a Geneset record, returns list of CanonicalGene records. - * @param geneset - * @return list of geneset genes - * @throws DaoException - */ - public static List getGenesetGenes(Geneset geneset) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement("SELECT * FROM geneset_gene WHERE GENESET_ID = ?"); - pstmt.setInt(1, geneset.getId()); - rs = pstmt.executeQuery(); - - // get list of entrez gene ids for geneset record - Set entrezGeneIds = new HashSet(); - while (rs.next()) { - entrezGeneIds.add(rs.getLong("ENTREZ_GENE_ID")); - } - - // get list of genes by entrez gene ids - List genes = new ArrayList(); - for (Long entrezGeneId : entrezGeneIds) { - CanonicalGene gene = daoGeneOptimized.getGene(entrezGeneId); - genes.add(gene); - } - - return genes; - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Given an external id, returns a Geneset record. - * @param externalId - * @return Geneset record - * @throws DaoException - */ - public static Geneset getGenesetByExternalId(String externalId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement("SELECT * FROM geneset WHERE `EXTERNAL_ID` = ?"); - pstmt.setString(1, externalId); - rs = pstmt.executeQuery(); - - // return null if result set is empty - if (rs.next()) { - return extractGeneset(rs); - } - else { - return null; - } - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Get Geneset record. - */ - public Geneset getGenesetById(int genesetId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement("SELECT * FROM geneset WHERE ID = ?"); - pstmt.setInt(1, genesetId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return extractGeneset(rs); - } else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Extracts Geneset record from ResultSet. - * @param rs - * @return Geneset record - * @throws SQLException - * @throws DaoException - */ - private static Geneset extractGeneset(ResultSet rs) throws SQLException, DaoException { - Integer id = rs.getInt("ID"); - Integer geneticEntityId = rs.getInt("GENETIC_ENTITY_ID"); - String externalId = rs.getString("EXTERNAL_ID"); - String name = rs.getString("NAME"); - String description = rs.getString("DESCRIPTION"); - String refLink = rs.getString("REF_LINK"); - - Geneset geneset = new Geneset(); - geneset.setId(id); - geneset.setGeneticEntityId(geneticEntityId); - geneset.setExternalId(externalId); - geneset.setName(name); - geneset.setDescription(description); - geneset.setRefLink(refLink); - List genesetGenes = getGenesetGenes(geneset); - if (genesetGenes != null && genesetGenes.size() > 0) { - geneset.setGenesetGenes(genesetGenes.stream().map(g -> g.getEntrezGeneId()).collect(Collectors.toSet())); - } - return geneset; - } - - public static Set getGenesetGeneticEntityIds() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement("SELECT ID FROM genetic_entity WHERE ENTITY_TYPE = 'GENESET'"); - rs = pstmt.executeQuery(); - - Set geneticEntities = new HashSet(); - while (rs.next()) { - geneticEntities.add(rs.getLong("ID")); - } - return geneticEntities; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Checks the usage of a geneset by genetic entity id. - * @param geneticEntityId - * @return boolean indicating whether geneset is in use by other studies - * @throws DaoException - */ - public static boolean checkUsage(Integer geneticEntityId) throws DaoException { - String SQL = "SELECT COUNT(DISTINCT `CANCER_STUDY_ID`) FROM genetic_profile " + - "WHERE `GENETIC_PROFILE_ID` IN (SELECT `GENETIC_PROFILE_ID` FROM genetic_alteration WHERE `GENETIC_ENTITY_ID` = ?)"; - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement(SQL); - pstmt.setInt(1, geneticEntityId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1)>0; - } - return false; - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - public static void updateGeneset(Geneset geneset, boolean updateGenesetGenes) throws DaoException { - String SQL = "UPDATE geneset SET " + - "`NAME` = ?, `DESCRIPTION` = ?, `REF_LINK` = ?" + - "WHERE `ID` = ?"; - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement(SQL); - pstmt.setString(1, geneset.getName()); - pstmt.setString(2, geneset.getDescription()); - pstmt.setString(3, geneset.getRefLink()); - pstmt.setInt(4, geneset.getId()); - pstmt.executeUpdate(); - - // We decided that when updating genesets, it's not a good idea to update genes it contains, because - // in that case, data could be still from old version of the geneset. - // A solution would be to update geneset database to new version, and include new genes in that. - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Delete Geneset genetic entity records. - */ - private static void deleteGenesetGeneticEntityRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement("DELETE FROM genetic_entity WHERE ENTITY_TYPE = 'GENESET'"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Deletes Geneset data such as GSVA Scores and Pvalues by genetic entity id - * @param id - * @throws DaoException - */ - private static void deleteGenesetGeneticProfiles() throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - try { - connection = JdbcUtil.getDbConnection(DaoGeneset.class); - - // Prepare statement - preparedStatement = connection.prepareStatement("DELETE FROM genetic_profile WHERE GENETIC_ALTERATION_TYPE = 'GENESET_SCORE'"); - - // Execute statement - preparedStatement.executeUpdate(); - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, connection, preparedStatement, resultSet); - } - } - - /** - * Deletes genetic_profile_link records which are pointing to a profile of type to GENESET_SCORE - * @throws DaoException - */ - private static void deleteGenesetGeneticProfileLinks() throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - try { - connection = JdbcUtil.getDbConnection(DaoGeneset.class); - - // Prepare statement: DELETE genetic_profile_link which are pointing to a profile of type to GENESET_SCORE - preparedStatement = connection.prepareStatement("DELETE FROM genetic_profile_link WHERE REFERRED_GENETIC_PROFILE_ID IN " - + "(SELECT GENETIC_PROFILE_ID FROM genetic_profile WHERE GENETIC_ALTERATION_TYPE = 'GENESET_SCORE')"); - - // Execute statement - preparedStatement.executeUpdate(); - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, connection, preparedStatement, resultSet); - } - } - - /** - * Deletes all records from 'geneset' table in database and records in related tables. - * @throws DaoException - */ - private static void deleteAllGenesetRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - - pstmt = con.prepareStatement("DELETE FROM geneset"); - pstmt.executeUpdate(); - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Deletes all records from 'geneset' table in database and records in related tables. - * @throws DaoException - */ - public static void deleteAllRecords() throws DaoException { - deleteAllGenesetRecords(); - deleteGenesetGeneticProfileLinks(); - deleteGenesetGeneticProfiles(); - deleteGenesetGeneticEntityRecords(); - DaoGenesetHierarchyNode.deleteAllGenesetHierarchyRecords(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenesetHierarchyLeaf.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenesetHierarchyLeaf.java deleted file mode 100644 index f1fa984dfdc..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenesetHierarchyLeaf.java +++ /dev/null @@ -1,104 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import java.util.*; - -import org.mskcc.cbio.portal.model.GenesetHierarchyLeaf; - -public class DaoGenesetHierarchyLeaf { - - private DaoGenesetHierarchyLeaf() { - } - - /** - * Add gene set hierarchy object to geneset_hierarchy_leaf table in database. - * @throws DaoException - */ - public static void addGenesetHierarchyLeaf(GenesetHierarchyLeaf genesetHierarchyLeaf) throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoGenesetHierarchyLeaf.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement("INSERT INTO geneset_hierarchy_leaf " - + "(`NODE_ID`, `GENESET_ID`) VALUES(?,?)"); - - // Fill in statement - preparedStatement.setInt(1, genesetHierarchyLeaf.getNodeId()); - preparedStatement.setInt(2, genesetHierarchyLeaf.getGenesetId()); - - // Execute statement - preparedStatement.executeUpdate(); - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenesetHierarchyLeaf.class, connection, preparedStatement, resultSet); - } - } - - public static List getGenesetHierarchyLeafsByGenesetId(int genesetId) throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoGenesetHierarchyLeaf.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement("SELECT * FROM geneset_hierarchy_leaf WHERE GENESET_ID = ?"); - preparedStatement.setInt(1, genesetId); - - // Execute statement - resultSet = preparedStatement.executeQuery(); - - List genesetHierarchyLeafs = new ArrayList(); - - while (resultSet.next()) { - GenesetHierarchyLeaf genesetHierarchyLeaf = new GenesetHierarchyLeaf(); - genesetHierarchyLeaf.setNodeId(resultSet.getInt("NODE_ID")); - genesetHierarchyLeaf.setGenesetId(resultSet.getInt("GENESET_ID")); - genesetHierarchyLeafs.add(genesetHierarchyLeaf); - } - - return genesetHierarchyLeafs; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenesetHierarchyLeaf.class, connection, preparedStatement, resultSet); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenesetHierarchyNode.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenesetHierarchyNode.java deleted file mode 100644 index 8b8d19734a5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGenesetHierarchyNode.java +++ /dev/null @@ -1,130 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; - -import org.mskcc.cbio.portal.model.GenesetHierarchy; - -public class DaoGenesetHierarchyNode { - - private DaoGenesetHierarchyNode() { - } - - /** - * Add gene set hierarchy object to geneset_hierarchy_node table in database. - * @throws DaoException - */ - public static void addGenesetHierarchy(GenesetHierarchy genesetHierarchy) throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoGenesetHierarchyNode.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement("INSERT INTO geneset_hierarchy_node " - + "(`NODE_NAME`, `PARENT_ID`) VALUES(?,?)", Statement.RETURN_GENERATED_KEYS); - - // Fill in statement - preparedStatement.setString(1, genesetHierarchy.getNodeName()); - - if (genesetHierarchy.getParentId() == 0) { - preparedStatement.setNull(2, java.sql.Types.INTEGER); - } else { - preparedStatement.setInt(2, genesetHierarchy.getParentId()); - } - - // Execute statement - preparedStatement.executeUpdate(); - - // Get the auto generated key, which is the Node ID: - resultSet = preparedStatement.getGeneratedKeys(); - if (resultSet.next()) { - genesetHierarchy.setNodeId(resultSet.getInt(1)); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenesetHierarchyNode.class, connection, preparedStatement, resultSet); - } - } - - /** - * Retrieve gene set hierarchy object from geneset_hierarchy_node table in database to check if table if filled. - * @throws DaoException - */ - public static boolean checkGenesetHierarchy() throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoGenesetHierarchyNode.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement("SELECT * FROM geneset_hierarchy_node LIMIT 1"); - - // Execute statement - resultSet = preparedStatement.executeQuery(); - - // return false if result set is empty - return resultSet.next(); - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenesetHierarchyNode.class, connection, preparedStatement, resultSet); - } - } - - /** - * Deletes all records from 'geneset_hierarchy_node' table in database. - * This also deletes all records from related 'geneset_hierarchy_leaf' table, via ON DELETE CASCADE - * constraint in DB. - * - * @throws DaoException - */ - public static void deleteAllGenesetHierarchyRecords() throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - try { - connection = JdbcUtil.getDbConnection(DaoGenesetHierarchyNode.class); - preparedStatement = connection.prepareStatement("DELETE FROM geneset_hierarchy_node"); - preparedStatement.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenesetHierarchyNode.class, connection, preparedStatement, resultSet); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticAlteration.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticAlteration.java deleted file mode 100644 index 25bef12594c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticAlteration.java +++ /dev/null @@ -1,468 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.*; -import java.util.Map.Entry; - -import com.fasterxml.jackson.databind.node.ObjectNode; - -import org.apache.commons.lang3.StringUtils; - -/** - * Data Access Object for the Genetic Alteration Table. - * - * @author Ethan Cerami. - */ -public class DaoGeneticAlteration { - private static final String DELIM = ","; - public static final String NAN = "NaN"; - private static DaoGeneticAlteration daoGeneticAlteration = null; - - /** - * Private Constructor (Singleton pattern). - */ - private DaoGeneticAlteration() { - } - - /** - * Gets Instance of Dao Object. (Singleton pattern). - * - * @return DaoGeneticAlteration Object. - * @throws DaoException Dao Initialization Error. - */ - public static DaoGeneticAlteration getInstance() throws DaoException { - if (daoGeneticAlteration == null) { - daoGeneticAlteration = new DaoGeneticAlteration(); - - } - - return daoGeneticAlteration; - } - - public static interface AlterationProcesser { - ObjectNode process( - long entrezGeneId, - String[] values, - ArrayList orderedSampleList - ); - } - - /** - * Adds a Row of Genetic Alterations associated with a Genetic Profile ID and Entrez Gene ID. - * @param geneticProfileId Genetic Profile ID. - * @param entrezGeneId Entrez Gene ID. - * @param values DELIM separated values. - * @return number of rows successfully added. - * @throws DaoException Database Error. - */ - public int addGeneticAlterations(int geneticProfileId, long entrezGeneId, String[] values) - throws DaoException { - return addGeneticAlterationsForGeneticEntity(geneticProfileId, DaoGeneOptimized.getGeneticEntityId(entrezGeneId), values); - } - - public int addGeneticAlterationsForGeneticEntity(int geneticProfileId, int geneticEntityId, String[] values) - throws DaoException { - - StringBuffer valueBuffer = new StringBuffer(); - for (String value: values) { - if (value.contains(DELIM)) { - throw new IllegalArgumentException ("Value cannot contain delim: " + DELIM - + " --> " + value); - } - valueBuffer.append(value).append(DELIM); - } - - if (MySQLbulkLoader.isBulkLoad() ) { - // write to the temp file maintained by the MySQLbulkLoader - MySQLbulkLoader.getMySQLbulkLoader("genetic_alteration").insertRecord(Integer.toString( geneticProfileId ), - Integer.toString( geneticEntityId ), valueBuffer.toString()); - // return 1 because normal insert will return 1 if no error occurs - return 1; - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement - ("INSERT INTO genetic_alteration (GENETIC_PROFILE_ID, " + - " GENETIC_ENTITY_ID," + - " `VALUES`) " - + "VALUES (?,?,?)"); - pstmt.setInt(1, geneticProfileId); - pstmt.setLong(2, geneticEntityId); - pstmt.setString(3, valueBuffer.toString()); - return pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } - - /** - * Gets the Specified Genetic Alteration. - * - * @param geneticProfileId Genetic Profile ID. - * @param sampleId Sample ID. - * @param entrezGeneId Entrez Gene ID. - * @return value or NAN. - * @throws DaoException Database Error. - */ - public String getGeneticAlteration(int geneticProfileId, int sampleId, - long entrezGeneId) throws DaoException { - HashMap sampleMap = getGeneticAlterationMap(geneticProfileId, entrezGeneId); - if (sampleMap.containsKey(sampleId)) { - return sampleMap.get(sampleId); - } else { - return NAN; - } - } - - /** - * Gets a HashMap of Values, keyed by Sample ID. - * @param geneticProfileId Genetic Profile ID. - * @param entrezGeneId Entrez Gene ID. - * @return HashMap of values, keyed by Sample ID. - * @throws DaoException Database Error. - */ - public HashMap getGeneticAlterationMap(int geneticProfileId, - long entrezGeneId) throws DaoException { - HashMap> map = getGeneticAlterationMap(geneticProfileId, Collections.singleton(entrezGeneId)); - if (map.isEmpty()) { - return new HashMap(); - } - - return map.get(entrezGeneId); - } - - /** - * Returns the map of entrezGeneId as key and map with all - * respective CaseId and Values as value. - * - * @param geneticProfileId Genetic Profile ID. - * @param entrezGeneIds Entrez Gene IDs. - * @return Map>. - * @throws DaoException Database Error. - */ - public HashMap> getGeneticAlterationMap(int geneticProfileId, Collection entrezGeneIds) throws DaoException { - Collection geneticEntityIds = null; - if (entrezGeneIds != null) { - //translate entrezGeneIds to corresponding geneticEntityIds: - geneticEntityIds = new ArrayList(); - for (Long entrezGeneId : entrezGeneIds) { - geneticEntityIds.add(DaoGeneOptimized.getGeneticEntityId(entrezGeneId)); - } - } - HashMap> intermediateMap = getGeneticAlterationMapForEntityIds(geneticProfileId, geneticEntityIds); - //translate back to entrez, since intermediateMap is keyed by geneticEntityIds: - HashMap> resultMap = new HashMap>(); - Iterator>> mapIterator = intermediateMap.entrySet().iterator(); - while (mapIterator.hasNext()) { - Entry> mapEntry = mapIterator.next(); - resultMap.put(DaoGeneOptimized.getEntrezGeneId(mapEntry.getKey()), mapEntry.getValue()); - } - return resultMap; - } - - /** - * Returns the map of geneticEntityIds as key and map with all - * respective CaseId and Values as value. - * - * @param geneticProfileId - * @param geneticEntityIds - * @return Map>. - * @throws DaoException - */ - public HashMap> getGeneticAlterationMapForEntityIds(int geneticProfileId, Collection geneticEntityIds) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - HashMap> map = new HashMap>(); - ArrayList orderedSampleList = DaoGeneticProfileSamples.getOrderedSampleList(geneticProfileId); - if (orderedSampleList == null || orderedSampleList.size() ==0) { - throw new IllegalArgumentException ("Could not find any samples for genetic" + - " profile ID: " + geneticProfileId); - } - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - if (geneticEntityIds == null) { - pstmt = con.prepareStatement("SELECT * FROM genetic_alteration WHERE" - + " GENETIC_PROFILE_ID = " + geneticProfileId); - } else { - pstmt = con.prepareStatement("SELECT * FROM genetic_alteration WHERE" - + " GENETIC_PROFILE_ID = " + geneticProfileId - + " AND GENETIC_ENTITY_ID IN ("+StringUtils.join(geneticEntityIds, ",")+")"); - } - rs = pstmt.executeQuery(); - while (rs.next()) { - HashMap mapSampleValue = new HashMap(); - int geneticEntityId = rs.getInt("GENETIC_ENTITY_ID"); - String values = rs.getString("VALUES"); - //hm.debug.. - String valueParts[] = values.split(DELIM); - for (int i=0; i - * @throws DaoException Database Error, MathException - */ - public static ArrayList getProcessedAlterationData( - int geneticProfileId, //queried profile internal id (num) - //Set entrezGeneIds, //list of genes in calculation gene pool (all genes or only cancer genes) - int offSet, //OFFSET for LIMIT (to get only one segment of the genes) - AlterationProcesser processor //implemented interface - ) throws DaoException { - - ArrayList result = new ArrayList<>(); - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - ArrayList orderedSampleList = DaoGeneticProfileSamples.getOrderedSampleList(geneticProfileId); - if (orderedSampleList == null || orderedSampleList.size() ==0) { - throw new IllegalArgumentException ("Could not find any samples for genetic" + - " profile ID: " + geneticProfileId); - } - - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - - pstmt = con.prepareStatement("SELECT * FROM genetic_alteration WHERE" - + " GENETIC_PROFILE_ID = " + geneticProfileId - + " LIMIT 3000 OFFSET " + offSet); - - rs = pstmt.executeQuery(); - while (rs.next()) { - long entrezGeneId = DaoGeneOptimized.getEntrezGeneId(rs.getInt("GENETIC_ENTITY_ID")); - String[] values = rs.getString("VALUES").split(DELIM); - ObjectNode datum = processor.process( - entrezGeneId, - values, - orderedSampleList); - if (datum != null) result.add(datum); - } - return result; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - - } - - /** - * Gets all Genes in a Specific Genetic Profile. - * @param geneticProfileId Genetic Profile ID. - * @return Set of Canonical Genes. - * @throws DaoException Database Error. - */ - public Set getGenesInProfile(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - Set geneList = new HashSet (); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement - ("SELECT * FROM genetic_alteration WHERE GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - - rs = pstmt.executeQuery(); - while (rs.next()) { - Long entrezGeneId = DaoGeneOptimized.getEntrezGeneId(rs.getInt("GENETIC_ENTITY_ID")); - geneList.add(daoGene.getGene(entrezGeneId)); - } - return geneList; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } - - /** - * Gets all Genes in a Specific Genetic Profile. - * @param geneticProfileId Genetic Profile ID. - * @return Set of Canonical Genes. - * @throws DaoException Database Error. - */ - public static Set getEntityIdsInProfile(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - Set geneticEntityList = new HashSet<>(); - - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement - ("SELECT * FROM genetic_alteration WHERE GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - - rs = pstmt.executeQuery(); - while (rs.next()) { - int geneticEntityId = rs.getInt("GENETIC_ENTITY_ID"); - geneticEntityList.add(geneticEntityId); - } - return geneticEntityList; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } - - /** - * Gets the total number of all genes in a Specific Genetic Profile. - * @param geneticProfileId Genetic Profile ID. - * @return number of Canonical Genes. - * @throws DaoException Database Error. - */ - public static int getGenesCountInProfile(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement - ("SELECT COUNT(*) FROM genetic_alteration WHERE GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } - - /** - * Gets total number of records in table. - * @return number of records. - * @throws DaoException Database Error. - */ - public int getCount() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement - ("SELECT COUNT(*) FROM genetic_alteration"); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } - - /** - * Deletes all Genetic Alteration Records associated with the specified Genetic Profile ID. - * - * @param geneticProfileId Genetic Profile ID. - * @throws DaoException Database Error. - */ - public void deleteAllRecordsInGeneticProfile(long geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement("DELETE from " + - "genetic_alteration WHERE GENETIC_PROFILE_ID=?"); - pstmt.setLong(1, geneticProfileId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } - - /** - * Deletes all Records in Table. - * - * @throws DaoException Database Error. - */ - public void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement("TRUNCATE TABLE genetic_alteration"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticEntity.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticEntity.java deleted file mode 100644 index e3858617890..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticEntity.java +++ /dev/null @@ -1,191 +0,0 @@ -package org.mskcc.cbio.portal.dao; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.*; - -import org.cbioportal.model.GeneticEntity; - -public class DaoGeneticEntity { - - /** - * Private Constructor to enforce Singleton Pattern. - */ - private DaoGeneticEntity() { - } - - private enum SqlAction { - INSERT, UPDATE, SELECT, DELETE - } - - /** - * Adds a new genetic entity Record to the Database and returns GeneticEntity - * - * @param GeneticEntity : GeneticEntity, can only contains the entity type - * @return : GeneticEntity created - * @throws DaoException Database Error. - */ - - public static GeneticEntity addNewGeneticEntity(GeneticEntity geneticEntity) throws DaoException { - - DbContainer container = executeSQLstatment( - SqlAction.INSERT, - "INSERT INTO genetic_entity (`ENTITY_TYPE`, `STABLE_ID`) " - + "VALUES(?,?)", - geneticEntity.getEntityType(), - geneticEntity.getStableId() - ); - - geneticEntity.setId(container.getId()); - - return geneticEntity; - } - - /** - * Given an external id, returns a GeneticEntity record. - * @param stableId - * @return GeneticEntity record - * @throws DaoException - */ - public static GeneticEntity getGeneticEntityByStableId(String stableId) throws DaoException { - DbContainer container = executeSQLstatment(SqlAction.SELECT, "SELECT * FROM genetic_entity WHERE `STABLE_ID` = ?", stableId); - return container.getGeneticEntity(); - } - - /** - * Get GeneticEntity record. - * @param id genetic_entity id - */ - public static GeneticEntity getGeneticEntityById(int id) throws DaoException { - DbContainer container = executeSQLstatment(SqlAction.SELECT, "SELECT * FROM genetic_entity WHERE ID = ?", String.valueOf(id)); - return container.getGeneticEntity(); - } - - /** - * Get all GeneticEntity record. - */ - public static List getAllGeneticEntities() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - pstmt = con.prepareStatement - ("SELECT * FROM genetic_entity"); - rs = pstmt.executeQuery(); - List geneticEntities = new ArrayList<>(); - while (rs.next()) { - geneticEntities.add(extractGeneticEntity(rs)); - } - return geneticEntities; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, pstmt, rs); - } - } - - /** - * Extracts Geneset record from ResultSet. - * @param rs - * @return Geneset record - * @throws SQLException - * @throws DaoException - */ - private static GeneticEntity extractGeneticEntity(ResultSet rs) throws SQLException, DaoException { - - Integer id = rs.getInt("ID"); - String stableId = rs.getString("STABLE_ID"); - String entityType = rs.getString("ENTITY_TYPE"); - - GeneticEntity geneticEntity = new GeneticEntity(id, entityType, stableId); - - return geneticEntity; - } - - /** - * Helper method for retrieval of a geneticEntity record from the database - * @param action type of MySQL operation - * @param statement MySQL statement - * @param keys Series of values used in the statement (order is important) - * @return Object return data from - * @throws DaoException - */ - private static DbContainer executeSQLstatment(SqlAction action, String statement, String ... keys) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - - // for insert statements the number of affected records is returned - // this requires the RETURN_GENERATED_KEYS to be set for insert statements. - int switchGetGeneratedKeys = PreparedStatement.NO_GENERATED_KEYS; - if (action == SqlAction.INSERT) - switchGetGeneratedKeys = PreparedStatement.RETURN_GENERATED_KEYS; - - pstmt = con.prepareStatement(statement, switchGetGeneratedKeys); - - int cnt = 1; - for (int i = 0; i < keys.length; i++) - pstmt.setString(cnt++, keys[i]); - - switch(action) { - case INSERT: - pstmt.executeUpdate(); - rs = pstmt.getGeneratedKeys(); - rs.next(); - return new DbContainer(rs.getInt(1)); - case SELECT: - rs = pstmt.executeQuery(); - if (rs.next()) { - return new DbContainer(extractGeneticEntity(rs)); - } - return new DbContainer(); - default: - pstmt.executeUpdate(); - return null; - } - - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, pstmt, rs); - } - } - - final static class DbContainer { - private int id; - private GeneticEntity geneticEntity; - - public DbContainer(){ - } - - public DbContainer(int id){ - this.id = id; - } - - public DbContainer(GeneticEntity geneticEntity) { - this.geneticEntity = geneticEntity; - } - - /** - * @return the geneticEntity - */ - public GeneticEntity getGeneticEntity() { - return geneticEntity; - } - - /** - * @return the id - */ - public int getId() { - return id; - } - - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfile.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfile.java deleted file mode 100644 index 0326fb2f68d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfile.java +++ /dev/null @@ -1,314 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import java.util.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.SpringUtil; - -/** - * Analogous to and replaces the old DaoCancerType. A CancerStudy has a NAME and - * DESCRIPTION. If PUBLIC is true a CancerStudy can be accessed by anyone, - -/** - * Data access object for Genetic Profile table - */ -public final class DaoGeneticProfile { - private DaoGeneticProfile() {} - - private static final Map byStableId = new HashMap(); - private static final Map byInternalId = new HashMap(); - private static final Map> byStudy = new HashMap>(); - - static { - SpringUtil.initDataSource(); - reCache(); - } - - public static synchronized void reCache() { - byStableId.clear(); - byInternalId.clear(); - byStudy.clear(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfile.class); - - pstmt = con.prepareStatement - ("SELECT * FROM genetic_profile"); - rs = pstmt.executeQuery(); - while (rs.next()) { - GeneticProfile profileType = extractGeneticProfile(rs); - cacheGeneticProfile(profileType); - } - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoGeneticProfile.class, con, pstmt, rs); - } - } - - private static void cacheGeneticProfile(GeneticProfile profile) { - byStableId.put(profile.getStableId(), profile); - byInternalId.put(profile.getGeneticProfileId(), profile); - List list = byStudy.get(profile.getCancerStudyId()); - if (list==null) { - list = new ArrayList(); - byStudy.put(profile.getCancerStudyId(), list); - } - list.add(profile); - } - - public static int addGeneticProfile(GeneticProfile profile) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - int rows = 0; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfile.class); - - pstmt = con.prepareStatement - ("INSERT INTO genetic_profile (`STABLE_ID`, `CANCER_STUDY_ID`, "+ - "`GENETIC_ALTERATION_TYPE`, `DATATYPE`, `NAME`, `DESCRIPTION`, "+ - "`SHOW_PROFILE_IN_ANALYSIS_TAB`, `PIVOT_THRESHOLD`, `SORT_ORDER`, `GENERIC_ASSAY_TYPE`, `PATIENT_LEVEL`) " + - "VALUES (?,?,?,?,?,?,?,?,?,?,?)"); - pstmt.setString(1, profile.getStableId()); - pstmt.setInt(2, profile.getCancerStudyId()); - pstmt.setString(3, profile.getGeneticAlterationType().name()); - pstmt.setString(4, profile.getDatatype()); - pstmt.setString(5, profile.getProfileName()); - pstmt.setString(6, profile.getProfileDescription()); - pstmt.setBoolean(7, profile.showProfileInAnalysisTab()); - - // `pivot_threshold_value` and `value_sort_order` `GENERIC_ASSAY_TYPE` fields are geneirc assay data specific. - // These fields are set to null when not present in profile object. - if (profile.getPivotThreshold() == null) { - pstmt.setNull(8, java.sql.Types.FLOAT); - } else { - pstmt.setFloat(8, profile.getPivotThreshold()); - } - if (profile.getSortOrder() == null) { - pstmt.setNull(9, java.sql.Types.INTEGER); - } else { - pstmt.setString(9, profile.getSortOrder()); - } - if (profile.getGenericAssayType() == null) { - pstmt.setNull(10, java.sql.Types.VARCHAR); - } else { - pstmt.setString(10, profile.getGenericAssayType()); - } - - // default value is false - pstmt.setBoolean(11, profile.getPatientLevel()); - - rows = pstmt.executeUpdate(); - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfile.class, con, pstmt, rs); - } - - reCache(); - return rows; - } - - /** - * Updates a Genetic Profile Name and Description. - * @param geneticProfileId Genetic Profile ID. - * @param name New Genetic Profile Name. - * @param description New Genetic Profile Description. - * @return Returns True if Genetic Profile was Updated. - * @throws DaoException Data Access Error. - */ - public static boolean updateNameAndDescription (int geneticProfileId, String name, String description) - throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - boolean ret = false; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfile.class); - pstmt = con.prepareStatement("UPDATE genetic_profile SET NAME=?, DESCRIPTION=? " + - "WHERE GENETIC_PROFILE_ID=?"); - pstmt.setString(1, name); - pstmt.setString(2, description); - pstmt.setInt(3, geneticProfileId); - ret = pstmt.executeUpdate() > 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfile.class, con, pstmt, rs); - } - - reCache(); - return ret; - } - - /** - * Updates a Genetic Profile datatype - */ - public static boolean updateDatatype( - int geneticProfileId, - String datatype - ) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - boolean ret; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfile.class); - pstmt = con.prepareStatement("UPDATE genetic_profile SET DATATYPE=? " + - "WHERE GENETIC_PROFILE_ID=?"); - pstmt.setString(1, datatype); - pstmt.setInt(2, geneticProfileId); - ret = pstmt.executeUpdate() > 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfile.class, con, pstmt, rs); - } - - reCache(); - return ret; - } - - public static int deleteGeneticProfile(GeneticProfile profile) throws DaoException { - int rows = 0; - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfile.class); - pstmt = con.prepareStatement("DELETE FROM genetic_profile WHERE STABLE_ID = ?"); - pstmt.setString(1, profile.getStableId()); - rows = pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfile.class, con, pstmt, rs); - } - - reCache(); - return rows; - } - - public static GeneticProfile getGeneticProfileByStableId(String stableId) { - return byStableId.get(stableId); - } - - public static GeneticProfile getGeneticProfileById(int geneticProfileId) { - return byInternalId.get(geneticProfileId); - } - - // TODO: UNIT TEST - public static ArrayList getGeneticProfiles (int[] geneticProfileIds) throws - DaoException { - ArrayList geneticProfileList = new ArrayList (); - for (int geneticProfileId: geneticProfileIds) { - GeneticProfile geneticProfile = - DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - if (geneticProfile != null) { - geneticProfileList.add(geneticProfile); - } else { - throw new IllegalArgumentException ("Could not find genetic profile for: " - + geneticProfileId); - } - } - return geneticProfileList; - } - - public static int getCount() { - return byStableId.size(); - } - - private static GeneticProfile extractGeneticProfile(ResultSet rs) throws SQLException { - GeneticProfile profileType = new GeneticProfile(); - profileType.setStableId(rs.getString("STABLE_ID")); - - profileType.setCancerStudyId(rs.getInt("CANCER_STUDY_ID")); - profileType.setProfileName(rs.getString("NAME")); - profileType.setProfileDescription(rs.getString("DESCRIPTION")); - try { - profileType.setShowProfileInAnalysisTab(rs.getBoolean("SHOW_PROFILE_IN_ANALYSIS_TAB")); - } catch (SQLException e) { - profileType.setShowProfileInAnalysisTab(true); - } - profileType.setGeneticAlterationType(GeneticAlterationType.valueOf(rs.getString("GENETIC_ALTERATION_TYPE"))); - profileType.setDatatype(rs.getString("DATATYPE")); - profileType.setGeneticProfileId(rs.getInt("GENETIC_PROFILE_ID")); - if (rs.getFloat("PIVOT_THRESHOLD") != 0) { - profileType.setPivotThreshold(rs.getFloat("PIVOT_THRESHOLD")); - } - if (rs.getString("SORT_ORDER") != null && ! rs.getString("SORT_ORDER").equals("") ) { - profileType.setSortOrder(rs.getString("SORT_ORDER")); - } - if (rs.getString("GENERIC_ASSAY_TYPE") != null && ! rs.getString("GENERIC_ASSAY_TYPE").equals("") ) { - profileType.setGenericAssayType(rs.getString("GENERIC_ASSAY_TYPE")); - } - profileType.setPatientLevel(rs.getBoolean("PATIENT_LEVEL")); - return profileType; - } - - public static ArrayList getAllGeneticProfiles(int cancerStudyId) { - List list = byStudy.get(cancerStudyId); - if (list==null) { - return new ArrayList(); - } - - // TODO: refactor the code to use List - return new ArrayList(list); - } - - public static void deleteAllRecords() throws DaoException { - byStableId.clear(); - byInternalId.clear(); - byStudy.clear(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfile.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE genetic_profile"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfile.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfileLink.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfileLink.java deleted file mode 100644 index b81387e122e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfileLink.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import org.mskcc.cbio.portal.model.*; - -public class DaoGeneticProfileLink { - - private DaoGeneticProfileLink() { - } - - /** - * Set genetic profile link in `genetic_profile_link` table in database. - * @throws DaoException - */ - public static void addGeneticProfileLink(GeneticProfileLink geneticProfileLink) throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoGeneticProfileLink.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement("INSERT INTO genetic_profile_link " - + "(REFERRING_GENETIC_PROFILE_ID, REFERRED_GENETIC_PROFILE_ID, REFERENCE_TYPE) VALUES(?,?,?)"); - - // Fill in statement - preparedStatement.setInt(1, geneticProfileLink.getReferringGeneticProfileId()); - preparedStatement.setInt(2, geneticProfileLink.getReferredGeneticProfileId()); - preparedStatement.setString(3, geneticProfileLink.getReferenceType()); - - // Execute statement - preparedStatement.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfileLink.class, connection, preparedStatement, resultSet); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfileSamples.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfileSamples.java deleted file mode 100644 index b8346957354..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGeneticProfileSamples.java +++ /dev/null @@ -1,163 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.Sample; - -import java.sql.*; -import java.util.*; - -/** - * Data Access Objects for the Genetic Profile Samples Table. - * - * @author Ethan Cerami. - */ -public final class DaoGeneticProfileSamples -{ - private static final String DELIM = ","; - - private DaoGeneticProfileSamples() {} - - /** - * Adds a new Ordered Sample List for a Specified Genetic Profile ID. - * - * @param geneticProfileId Genetic Profile ID. - * @param orderedSampleList Array List of Sample IDs. - * @return number of rows added. - * @throws DaoException Data Access Exception. - */ - public static int addGeneticProfileSamples(int geneticProfileId, List orderedSampleList) - throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - StringBuffer orderedSampleListBuf = new StringBuffer(); - // Created Joined String, based on DELIM token - for (Integer sampleId : orderedSampleList) { - orderedSampleListBuf.append(Integer.toString(sampleId)).append(DELIM); - } - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfileSamples.class); - pstmt = con.prepareStatement - ("INSERT INTO genetic_profile_samples (`GENETIC_PROFILE_ID`, " + - "`ORDERED_SAMPLE_LIST`) "+ "VALUES (?,?)"); - pstmt.setInt(1, geneticProfileId); - pstmt.setString(2, orderedSampleListBuf.toString()); - return pstmt.executeUpdate(); - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfileSamples.class, con, pstmt, rs); - } - } - - /** - * Deletes all samples associated with the specified Genetic Profile ID. - * - * @param geneticProfileId Genetic Profile ID. - * @throws DaoException Database Error. - */ - public static void deleteAllSamplesInGeneticProfile(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfileSamples.class); - pstmt = con.prepareStatement("DELETE from " + - "genetic_profile_samples WHERE GENETIC_PROFILE_ID=?"); - pstmt.setLong(1, geneticProfileId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfileSamples.class, con, pstmt, rs); - } - } - - /** - * Gets an Ordered Sample List for the specified Genetic Profile ID. - * - * @param geneticProfileId Genetic Profile ID. - * @throws DaoException Database Error. - */ - public static ArrayList getOrderedSampleList(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfileSamples.class); - pstmt = con.prepareStatement - ("SELECT * FROM genetic_profile_samples WHERE GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - if (rs.next()) { - String orderedSampleList = rs.getString("ORDERED_SAMPLE_LIST"); - - // Split, based on DELIM token - String parts[] = orderedSampleList.split(DELIM); - ArrayList sampleList = new ArrayList (); - for (String internalSampleId : parts) { - sampleList.add(Integer.parseInt(internalSampleId)); - } - return sampleList; - } else { - return new ArrayList(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfileSamples.class, con, pstmt, rs); - } - } - - /** - * Deletes all Records in the table. - * @throws DaoException Database Exception. - */ - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticProfileSamples.class); - pstmt = con.prepareStatement("TRUNCATE TABLE genetic_profile_samples"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticProfileSamples.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGistic.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGistic.java deleted file mode 100644 index 55254d47aaf..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoGistic.java +++ /dev/null @@ -1,410 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Gistic; -import org.mskcc.cbio.portal.validate.ValidateGistic; -import org.mskcc.cbio.portal.validate.validationException; - -import java.sql.Connection; -import java.sql.Statement; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * A gistic includes a ROI and GISTIC information concerning that region. - * - * @author Gideon Dresdner - */ - -public class DaoGistic { - /** - * Adds a ROI with Gistic info to the database - * - * @param gistic Gistic object - * @throws DaoException - */ - - private static final Logger log = LoggerFactory.getLogger(DaoGistic.class); - - public static void addGistic(Gistic gistic) throws DaoException, validationException { - if (gistic == null) { - throw new DaoException("Given a null gistic object"); - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - ValidateGistic.validateBean(gistic); - - try { - con = JdbcUtil.getDbConnection(DaoGistic.class); - // insert into SQL gistic table - pstmt = con.prepareStatement - ("INSERT INTO gistic (`CANCER_STUDY_ID`," + - "`CHROMOSOME`, " + - "`CYTOBAND`, " + - "`WIDE_PEAK_START`, " + - "`WIDE_PEAK_END`, " + - "`Q_VALUE`, " + - "`AMP`) " + - "VALUES (?,?,?,?,?,?,?)", - Statement.RETURN_GENERATED_KEYS); - - pstmt.setInt(1, gistic.getCancerStudyId()); - pstmt.setInt(2, gistic.getChromosome()) ; - pstmt.setString(3, gistic.getCytoband()); - pstmt.setInt(4, gistic.getPeakStart()); - pstmt.setInt(5, gistic.getPeakEnd()); - pstmt.setDouble(6, gistic.getqValue()); - pstmt.setBoolean(7, gistic.getAmp()); - pstmt.executeUpdate(); - - // insert into SQL gistic_to_gene table - rs = pstmt.getGeneratedKeys(); - if (rs.next()) { - int autoId = rs.getInt(1); - gistic.setInternalId(autoId); - } - addGisticGenes(gistic, con); - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGistic.class, con, pstmt, rs); - } - } - - /** - * Helper function for addGistic. Adds the genes in the ROI to the database (gistic_to_genes) - * @param gistic - * @throws SQLException - * @throws DaoException - */ - private static void addGisticGenes(Gistic gistic, Connection con) throws DaoException { - ArrayList genes = gistic.getGenes_in_ROI(); - PreparedStatement pstmt; - - try { - if (!genes.isEmpty()) { - for (CanonicalGene g : genes) { - - // EntrezId = -1 if it does not exist in the gene table - // if this is the case, we are going to simply skip over this gene - if (g.getEntrezGeneId() != -1) { - pstmt = con.prepareStatement - ("INSERT INTO gistic_to_gene (`GISTIC_ROI_ID`," + - "`ENTREZ_GENE_ID`)" + - "VALUES (?,?)"); - - pstmt.setInt(1, gistic.getInternalId()); - pstmt.setLong(2, g.getEntrezGeneId()); - - pstmt.executeUpdate(); - } - - else { - throw new DaoException("gene not found, skipping: " + g); - } - } - } else { - throw new DaoException("No genes associated with given gistic"); - } - - } catch (SQLException e) { - - if (log.isDebugEnabled()) { - log.debug(e + " : " + genes); - } - - throw new DaoException(e); - } - } - - /** - * - * Extracts Gistic JDBC Results. - * @param rs Result Set of a JDBC database query - * @return Gistic - * @throws SQLException - * @throws DaoException - */ - private static Gistic extractGistic(Connection con, ResultSet rs) throws DaoException { - - // get the genes from the SQL gistic_to_gene table - // associated with a particular GISTIC_ROI_ID - PreparedStatement pstmt ; - ResultSet _rs = null; - Gistic gistic; - ArrayList genes = new ArrayList(); - - try { - - int id = rs.getInt("GISTIC_ROI_ID"); - - pstmt = con.prepareStatement("SELECT * FROM gistic_to_gene WHERE GISTIC_ROI_ID = ?"); - pstmt.setInt(1, id); - - _rs = pstmt.executeQuery(); - - while ( _rs.next() ) { - long entrez = _rs.getLong("ENTREZ_GENE_ID"); - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene(entrez); - genes.add(gene); - } - - // create gistic return object - gistic = new Gistic(rs.getInt("CANCER_STUDY_ID"), - rs.getInt("CHROMOSOME") , - rs.getString("CYTOBAND") , - rs.getInt("WIDE_PEAK_START"), - rs.getInt("WIDE_PEAK_END"), - rs.getFloat("Q_VALUE") , - genes, - rs.getBoolean("AMP")); - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(_rs); - } - - return gistic; - } - - /** - * Given an ROI, returns associated Gistic objects. - * Right now, perhaps this is useless, but maybe something for the future? - * @param chromosome - * @param peakStart - * @param peakEnd - * @return - * @throws DaoException - */ - public static ArrayList getGisticByROI(int chromosome, int peakStart, int peakEnd) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGistic.class); - pstmt = con.prepareStatement("SELECT * FROM gistic WHERE CHROMOSOME = ? " + - "AND WIDE_PEAK_START = ? " + - "AND WIDE_PEAK_END = ?"); - - pstmt.setInt(1, chromosome); - pstmt.setInt(2, peakStart); - pstmt.setInt(3, peakEnd); - - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - - while( rs.next() ) { - Gistic gistic = extractGistic(con, rs); - list.add(gistic); - } - return list; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGistic.class, con, pstmt, rs); - } - } - - /** - * Returns a list of all Gistic objects associated with a particular CancerStudy - * @param cancerStudyId CancerStudyId (of a database record) - * @return - */ - public static ArrayList getAllGisticByCancerStudyId(int cancerStudyId) throws DaoException { - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGistic.class); - pstmt = con.prepareStatement("SELECT * FROM gistic WHERE CANCER_STUDY_ID = ? "); - pstmt.setInt(1, cancerStudyId); - - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - - while( rs.next() ) { - Gistic gistic = extractGistic(con, rs); - list.add(gistic); - } - return list; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGistic.class, con, pstmt, rs); - } - } - - /** - * Returns the number of rows in the gistic database table - * @param cancerStudy cancerStudyId - * @return no. of gistics - * @throws DaoException - */ - public static int countGistic(int cancerStudy) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGistic.class); - pstmt = con.prepareStatement - ("SELECT count(*) FROM gistic WHERE CANCER_STUDY_ID = ?"); - pstmt.setInt(1, cancerStudy); - rs = pstmt.executeQuery(); - - if (rs.next()) { - return rs.getInt(1); - } - - return 0; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGistic.class, con, pstmt, rs); - } - } - - /** - * Deletes all Gistic records in the database (including gistic and gistic_to_gene tables) - * @throws DaoException - */ - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGistic.class); - - pstmt = con.prepareStatement("TRUNCATE TABLE gistic_to_gene"); - pstmt.executeUpdate(); - - pstmt = con.prepareStatement("TRUNCATE TABLE gistic"); - pstmt.executeUpdate(); - - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGistic.class, con, pstmt, rs); - } - } - - /** - * Deletes a particular Gistic record in the database (including corresponding gistic_to_gene records) - * @param gisticInternalId - * @throws DaoException - */ - - public static void deleteGistic(int gisticInternalId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGistic.class); - - pstmt = con.prepareStatement("DELETE from gistic_to_gene WHERE GISTIC_ROI_ID=?"); - pstmt.setInt(1, gisticInternalId); - pstmt.executeUpdate(); - - pstmt = con.prepareStatement("DELETE from gistic WHERE GISTIC_ROI_ID=?"); - pstmt.setInt(1, gisticInternalId); - pstmt.executeUpdate(); - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGistic.class, con, pstmt, rs); - } - } - - /** - * Asks whether the gistic database table is empty. - * @param cancerStudy - * @return True is there are gistics for cancerStudy, false if there are not. - * @throws DaoException - */ - public static boolean hasGistic(CancerStudy cancerStudy) throws DaoException { - return !(countGistic(cancerStudy.getInternalId()) == 0); - } - - /** - * Returns all gistics in the database - * @return ArrayList of gistics - * @throws DaoException - */ - public static ArrayList getAllGistic() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoGistic.class); - pstmt = con.prepareStatement("SELECT * FROM gistic"); - - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - - while( rs.next() ) { - Gistic gistic = extractGistic(con, rs); - list.add(gistic); - } - return list; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGistic.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoInfo.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoInfo.java deleted file mode 100644 index b8482b4354c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoInfo.java +++ /dev/null @@ -1,168 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.lang.StringBuilder; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; - -import org.mskcc.cbio.portal.util.GlobalProperties; - -public class DaoInfo { - private static String version; - - /** - * Set database schema version in `info` table in database. - * @throws DaoException - */ - public static synchronized void setVersion() { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - version = "-1"; - try { - con = JdbcUtil.getDbConnection(DaoInfo.class); - pstmt = con.prepareStatement - ("SELECT * FROM info"); - rs = pstmt.executeQuery(); - if (rs.next()) { - version = rs.getString("DB_SCHEMA_VERSION"); - } - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoInfo.class, con, pstmt, rs); - } - } - - /** - * Get database schema version in `info` table in database. - * @throws DaoException - */ - public static String getVersion() { - return version; - } - - /** - * Check database schema version in `info` table in database. - * @throws DaoException - */ - public static boolean checkVersion(StringBuilder logMessageBuilder) { - setVersion(); - String expectedVersion = GlobalProperties.getDbVersion(); - String foundVersion = getVersion(); - logMessageBuilder.append("Checked DB schema version: (expected: " + expectedVersion + ") (found: " + foundVersion +")"); - return foundVersion.equals(expectedVersion); - } - - /** - * Set gene set version in `info` table in database. - * @throws DaoException - */ - public static void setGenesetVersion(String genesetVersion) throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoInfo.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement("UPDATE info set GENESET_VERSION = ?"); - - preparedStatement.setString(1, genesetVersion); - // Execute statement - preparedStatement.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoInfo.class, connection, preparedStatement, resultSet); - } - } - - /** - * Get gene set version from `info` table in database. - * @throws DaoException - */ - public static String getGenesetVersion() throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoInfo.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement( - "SELECT * FROM info"); - - // Execute statement - resultSet = preparedStatement.executeQuery(); - String genesetVersion = new String(); - - // Extract version from result - if (resultSet.next()) { - genesetVersion = resultSet.getString("GENESET_VERSION"); - } - return genesetVersion; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoInfo.class, connection, preparedStatement, resultSet); - } - } - - /** - * Clears (resets to NULL) the gene set version in `info` table in database. - * @throws DaoException - */ - public static void clearVersion() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoInfo.class); - - pstmt = con.prepareStatement("UPDATE info set GENESET_VERSION = NULL"); - pstmt.executeUpdate(); - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoInfo.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoMutSig.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoMutSig.java deleted file mode 100644 index 4a1c740d047..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoMutSig.java +++ /dev/null @@ -1,299 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.MutSig; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; - -/** - * - * @author Lennart Bastian, Gideon Dresdner - * DaoMutSig defines methods that interact with the CGDS database - * getMutSig methods return MutSig objects. addMutSig takes a MutSig object and adds it to CGDS - * getAllMutSig returns an arraylist - * - */ - -public class DaoMutSig { - - private DaoMutSig() { - } - - /* - * Adds a new MutSig Record to the Database. - * - * @param mutSig Mut Sig Object. - * @return number of records successfully added. - * @throws DaoException Database Error. - */ - - public static int addMutSig(MutSig mutSig) throws DaoException { - - CanonicalGene gene = mutSig.getCanonicalGene(); - - if (MySQLbulkLoader.isBulkLoad()) { - // write to the temp file maintained by the MySQLbulkLoader - MySQLbulkLoader.getMySQLbulkLoader("mut_sig").insertRecord(Integer.toString(mutSig.getCancerType()), - Long.toString(gene.getEntrezGeneId()), - Integer.toString(mutSig.getRank()), - Integer.toString(mutSig.getNumBasesCovered()), - Integer.toString(mutSig.getNumMutations()), - Float.toString(mutSig.getpValue()), - Float.toString(mutSig.getqValue())); - - // return 1 because normal insert will return 1 if no error occurs - return 1; - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - if (mutSig != null) { - con = JdbcUtil.getDbConnection(DaoMutSig.class); - - pstmt = con.prepareStatement - ("INSERT INTO mut_sig (`CANCER_STUDY_ID`," + - "`ENTREZ_GENE_ID`, " + - "`RANK`, " + - "`NumBasesCovered`, " + - "`NumMutations`, " + - "`P_Value`, " + - "`Q_Value`) " + - "VALUES (?,?,?,?,?,?,?)"); - - pstmt.setInt(1, mutSig.getCancerType()); - pstmt.setLong(2,gene.getEntrezGeneId()); - pstmt.setInt(3,mutSig.getRank()); - pstmt.setInt(4,mutSig.getNumBasesCovered()); - pstmt.setInt(5,mutSig.getNumMutations()); - pstmt.setFloat(6, mutSig.getpValue()); - pstmt.setFloat(7, mutSig.getqValue()); - - - return pstmt.executeUpdate(); - } - - else { - return 0; - } - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutSig.class, con, pstmt, rs); - } - } - - public static MutSig getMutSig(String hugoGeneSymbol, int cancerStudy) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - //get a new DaoGene Object, and get the EntrezGeneID - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - CanonicalGene gene = daoGene.getGene(hugoGeneSymbol); - - if (gene == null) { - throw new java.lang.IllegalArgumentException("This HugoGeneSymbol does not exist in Database: " + hugoGeneSymbol); - } else { - long entrezGeneID = gene.getEntrezGeneId(); - try { - con = JdbcUtil.getDbConnection(DaoMutSig.class); - pstmt = con.prepareStatement - ("SELECT * FROM mut_sig WHERE ENTREZ_GENE_ID = ? AND CANCER_STUDY_ID = ?"); - pstmt.setLong(1, entrezGeneID); - pstmt.setInt(2, cancerStudy); - rs = pstmt.executeQuery(); - if (rs.next()) { - return DaoMutSig.assignMutSig(gene, rs); - } else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutSig.class, con, pstmt, rs); - } - } - } - - public static MutSig getMutSig(Long entrezGeneID, int cancerStudy) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - try { - con = JdbcUtil.getDbConnection(DaoMutSig.class); - pstmt = con.prepareStatement - ("SELECT * FROM mut_sig WHERE ENTREZ_GENE_ID = ? AND CANCER_STUDY_ID = ?"); - pstmt.setLong(1, entrezGeneID); - pstmt.setInt(2, cancerStudy); - rs = pstmt.executeQuery(); - if (rs.next()) { - //first go into gene database, and make a Canonical Gene Object with - CanonicalGene gene = daoGene.getGene(rs.getLong("ENTREZ_GENE_ID")); - return DaoMutSig.assignMutSig(gene, rs); - } else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutSig.class, con, pstmt, rs); - } - } - - public static ArrayList getAllMutSig(int cancerStudy) throws DaoException { - ArrayList mutSigList = new ArrayList(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - try { - con = JdbcUtil.getDbConnection(DaoMutSig.class); - pstmt = con.prepareStatement - ("SELECT * FROM mut_sig WHERE CANCER_STUDY_ID = ?"); - pstmt.setInt(1, cancerStudy); - rs = pstmt.executeQuery(); - - while (rs.next()) { - CanonicalGene gene = daoGene.getGene(rs.getLong("ENTREZ_GENE_ID")); - MutSig mutSig = DaoMutSig.assignMutSig(gene, rs); - mutSigList.add(mutSig); - } - - return mutSigList; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutSig.class, con, pstmt, rs); - } - } - - public static int countMutSig(int cancerStudy) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoMutSig.class); - pstmt = con.prepareStatement - ("SELECT count(*) FROM mut_sig WHERE CANCER_STUDY_ID = ?"); - pstmt.setInt(1, cancerStudy); - rs = pstmt.executeQuery(); - - if (rs.next()) { - return rs.getInt(1); - } - - return 0; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutSig.class, con, pstmt, rs); - } - } - - public static ArrayList getAllMutSig(int cancerStudy, double qValueThreshold) throws DaoException { - ArrayList mutSigList = new ArrayList(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - try { - con = JdbcUtil.getDbConnection(DaoMutSig.class); - pstmt = con.prepareStatement - ("SELECT * FROM mut_sig WHERE CANCER_STUDY_ID = ? AND Q_Value < ?"); - pstmt.setInt(1, cancerStudy); - pstmt.setDouble(2,qValueThreshold); - rs = pstmt.executeQuery(); - while (rs.next()) { - CanonicalGene gene = daoGene.getGene(rs.getLong("ENTREZ_GENE_ID")); - MutSig mutSig = DaoMutSig.assignMutSig(gene, rs); - mutSigList.add(mutSig); - } - return mutSigList; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutSig.class, con, pstmt, rs); - } - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutSig.class); - pstmt = con.prepareStatement("TRUNCATE TABLE mut_sig"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutSig.class, con, pstmt, rs); - } - } - - private static MutSig assignMutSig(CanonicalGene gene, ResultSet rs) - throws SQLException, DaoException { - - return new MutSig(rs.getInt("CANCER_STUDY_ID"), - gene, - rs.getInt("RANK"), - rs.getInt("NumBasesCovered"), - rs.getInt("numMutations"), - rs.getFloat("P_Value"), - rs.getFloat("Q_Value")); - } - - /** - * asks the database whether or not there are mutsigs for a given cancer study - * @param cancerStudy - * @return true or false - * - */ - public static boolean hasMutsig(CancerStudy cancerStudy) throws DaoException { - return countMutSig(cancerStudy.getInternalId()) == 0; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoMutation.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoMutation.java deleted file mode 100644 index 8adbdaddb3f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoMutation.java +++ /dev/null @@ -1,1678 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.apache.commons.collections4.MapIterator; -import org.apache.commons.collections4.keyvalue.MultiKey; -import org.apache.commons.collections4.map.MultiKeyMap; -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.mskcc.cbio.portal.model.ExtendedMutation; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.util.MutationKeywordUtils; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; -import java.util.Collections; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -/** - * Data access object for Mutation table - */ -public final class DaoMutation { - public static final String NAN = "NaN"; - private static final String MUTATION_COUNT_ATTR_ID = "MUTATION_COUNT"; - - public static int addMutation(ExtendedMutation mutation, boolean newMutationEvent) throws DaoException { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new DaoException("You have to turn on MySQLbulkLoader in order to insert mutations"); - } else { - int result = 1; - if (newMutationEvent) { - //add event first, as mutation has a Foreign key constraint to the event: - result = addMutationEvent(mutation.getEvent())+1; - } - - if ((mutation.getDriverFilter() != null - && !mutation.getDriverFilter().isEmpty() - && !mutation.getDriverFilter().toLowerCase().equals("na")) - || - (mutation.getDriverTiersFilter() != null - && !mutation.getDriverTiersFilter().isEmpty() - && !mutation.getDriverTiersFilter().toLowerCase().equals("na"))) { - MySQLbulkLoader.getMySQLbulkLoader("alteration_driver_annotation").insertRecord( - Long.toString(mutation.getMutationEventId()), - Integer.toString(mutation.getGeneticProfileId()), - Integer.toString(mutation.getSampleId()), - mutation.getDriverFilter(), - mutation.getDriverFilterAnn(), - mutation.getDriverTiersFilter(), - mutation.getDriverTiersFilterAnn() - ); - } - - MySQLbulkLoader.getMySQLbulkLoader("mutation").insertRecord( - Long.toString(mutation.getMutationEventId()), - Integer.toString(mutation.getGeneticProfileId()), - Integer.toString(mutation.getSampleId()), - Long.toString(mutation.getGene().getEntrezGeneId()), - mutation.getSequencingCenter(), - mutation.getSequencer(), - mutation.getMutationStatus(), - mutation.getValidationStatus(), - mutation.getTumorSeqAllele1(), - mutation.getTumorSeqAllele2(), - mutation.getMatchedNormSampleBarcode(), - mutation.getMatchNormSeqAllele1(), - mutation.getMatchNormSeqAllele2(), - mutation.getTumorValidationAllele1(), - mutation.getTumorValidationAllele2(), - mutation.getMatchNormValidationAllele1(), - mutation.getMatchNormValidationAllele2(), - mutation.getVerificationStatus(), - mutation.getSequencingPhase(), - mutation.getSequenceSource(), - mutation.getValidationMethod(), - mutation.getScore(), - mutation.getBamFile(), - (mutation.getTumorAltCount() == null) ? null : Integer.toString(mutation.getTumorAltCount()), - (mutation.getTumorRefCount() == null) ? null : Integer.toString(mutation.getTumorRefCount()), - (mutation.getNormalAltCount() == null) ? null : Integer.toString(mutation.getNormalAltCount()), - (mutation.getNormalRefCount() == null) ? null : Integer.toString(mutation.getNormalRefCount()), - //AminoAcidChange column is not used - null, - mutation.getAnnotationJson()); - return result; - } - } - - public static int addMutationEvent(ExtendedMutation.MutationEvent event) throws DaoException { - // use this code if bulk loading - // write to the temp file maintained by the MySQLbulkLoader - String keyword = MutationKeywordUtils.guessOncotatorMutationKeyword(event.getProteinChange(), event.getMutationType()); - MySQLbulkLoader.getMySQLbulkLoader("mutation_event").insertRecord( - Long.toString(event.getMutationEventId()), - Long.toString(event.getGene().getEntrezGeneId()), - event.getChr(), - Long.toString(event.getStartPosition()), - Long.toString(event.getEndPosition()), - event.getReferenceAllele(), - event.getTumorSeqAllele(), - event.getProteinChange(), - event.getMutationType(), - event.getNcbiBuild(), - event.getStrand(), - event.getVariantType(), - event.getDbSnpRs(), - event.getDbSnpValStatus(), - event.getRefseqMrnaId(), - event.getCodonChange(), - event.getUniprotAccession(), - Integer.toString(event.getProteinPosStart()), - Integer.toString(event.getProteinPosEnd()), - boolToStr(event.isCanonicalTranscript()), - keyword==null ? "\\N":(event.getGene().getHugoGeneSymbolAllCaps()+" "+keyword)); - return 1; - } - - public static void createMutationCountClinicalData(GeneticProfile geneticProfile) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - // add mutation count meta attribute if it does not exist - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum(MUTATION_COUNT_ATTR_ID, geneticProfile.getCancerStudyId()); - if (clinicalAttribute == null) { - ClinicalAttribute attr = new ClinicalAttribute(MUTATION_COUNT_ATTR_ID, "Mutation Count", "Mutation Count", "NUMBER", - false, "30", geneticProfile.getCancerStudyId()); - DaoClinicalAttributeMeta.addDatum(attr); - } - - /* - * Add MUTATION_COUNT for each sample by checking number of - * mutations for the given genetic profile. - * - * We do not add the MUTATION_COUNT clinical data for the sample if - * it's not profiled. If it *is* profiled but there are 0 - * mutations, add a MUTATION_COUNT with 0 value record. Do not - * include germline when counting mutations. - * - * Use REPLACE (conditional INSERT/UPDATE) which inserts - * new counts if they don't exist and overwrites them if they do. - * This is necessary for when the mutation data is split over - * multiple files with same profile id. Note that since - * clinical_sample has a key contraint on INTERNAL_ID and ATTR_ID, - * there can only be one MUTATION_COUNT record for each sample, so - * we assume each sample is in only one MUTATION_EXTENDED profile. - */ - pstmt = con.prepareStatement( - "REPLACE `clinical_sample` " + - "SELECT sample_profile.`SAMPLE_ID`, 'MUTATION_COUNT', COUNT(DISTINCT mutation_event.`CHR`, mutation_event.`START_POSITION`, " + - "mutation_event.`END_POSITION`, mutation_event.`REFERENCE_ALLELE`, mutation_event.`TUMOR_SEQ_ALLELE`) AS MUTATION_COUNT " + - "FROM `sample_profile` " + - "LEFT JOIN mutation ON mutation.`SAMPLE_ID` = sample_profile.`SAMPLE_ID` " + - "AND ( mutation.`MUTATION_STATUS` <> 'GERMLINE' OR mutation.`MUTATION_STATUS` IS NULL ) " + - "LEFT JOIN mutation_event ON mutation.`MUTATION_EVENT_ID` = mutation_event.`MUTATION_EVENT_ID` " + - "INNER JOIN genetic_profile ON genetic_profile.`GENETIC_PROFILE_ID` = sample_profile.`GENETIC_PROFILE_ID` " + - "WHERE genetic_profile.`GENETIC_ALTERATION_TYPE` = 'MUTATION_EXTENDED' " + - "AND genetic_profile.`GENETIC_PROFILE_ID`=? " + - "GROUP BY sample_profile.`GENETIC_PROFILE_ID` , sample_profile.`SAMPLE_ID`;"); - pstmt.setInt(1, geneticProfile.getGeneticProfileId()); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - public static void calculateMutationCountByKeyword(int geneticProfileId) throws DaoException { - if (!MySQLbulkLoader.isBulkLoad()) { - throw new DaoException("You have to turn on MySQLbulkLoader in order to update mutation counts by keyword"); - } else { - MultiKeyMap mutationEventKeywordCountMap = getMutationEventKeywordCountByGeneticProfileId(geneticProfileId); // mutation event keyword -> entrez id -> keyword count - Map geneCountMap = getGeneCountByGeneticProfileId(geneticProfileId); // entrez id -> gene count - MapIterator it = mutationEventKeywordCountMap.mapIterator(); - while (it.hasNext()) { - it.next(); - MultiKey mk = (MultiKey) it.getKey(); - String mutationEventKeyword = String.valueOf(mk.getKey(0)); - Long entrezGeneId = Long.valueOf(mk.getKey(1).toString()); - String keywordCount = it.getValue().toString(); - Integer geneCount = geneCountMap.get(entrezGeneId); - MySQLbulkLoader.getMySQLbulkLoader("mutation_count_by_keyword").insertRecord( - Integer.toString(geneticProfileId), - mutationEventKeyword, - Long.toString(entrezGeneId), - keywordCount, - Integer.toString(geneCount) - ); - } - } - } - - public static MultiKeyMap getMutationEventKeywordCountByGeneticProfileId(int geneticProfileId) throws DaoException { - MultiKeyMap mutationEventKeywordCountByGeneticProfileId = new MultiKeyMap(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT mutation_event.`KEYWORD`, mutation_event.`ENTREZ_GENE_ID`, IF(mutation_event.`KEYWORD` IS NULL, 0, COUNT(DISTINCT(mutation.SAMPLE_ID))) AS KEYWORD_COUNT " + - "FROM mutation_event JOIN mutation on mutation.`MUTATION_EVENT_ID` = mutation_event.`MUTATION_EVENT_ID` " + - "WHERE mutation.`GENETIC_PROFILE_ID` = ? " + - "GROUP BY mutation_event.`KEYWORD`, mutation_event.`ENTREZ_GENE_ID`;" - ); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - while (rs.next()) { - mutationEventKeywordCountByGeneticProfileId.put(rs.getString(1), rs.getLong(2), rs.getInt(3)); - } - return mutationEventKeywordCountByGeneticProfileId; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - public static Map getGeneCountByGeneticProfileId(int geneticProfileId) throws DaoException { - Map geneCountByGeneticProfileId = new HashMap<>(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT ENTREZ_GENE_ID AS `ENTREZ_GENE_ID`, COUNT(DISTINCT(SAMPLE_ID)) AS `GENE_COUNT`" + - " FROM mutation WHERE GENETIC_PROFILE_ID = ? " + - "GROUP BY ENTREZ_GENE_ID;"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - while (rs.next()) { - geneCountByGeneticProfileId.put(rs.getLong("ENTREZ_GENE_ID"), rs.getInt("GENE_COUNT")); - } - return geneCountByGeneticProfileId; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * Used by GeneticAlterationUtil (which is used by GetProfileData via webservice.do). This use comes out of an - * effort to discontinue the use of the business module. - */ - public static ArrayList getMutations (int geneticProfileId, Collection targetSampleList, - long entrezGeneId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation " + - "INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE SAMPLE_ID IN ('" + org.apache.commons.lang3.StringUtils.join(targetSampleList, "','") + - "') AND GENETIC_PROFILE_ID = ? AND mutation.ENTREZ_GENE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - pstmt.setLong(2, entrezGeneId); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static HashMap getSimplifiedMutations (int geneticProfileId, Collection targetSampleList, - Collection entrezGeneIds) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - HashMap hm = new HashMap(); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT SAMPLE_ID, ENTREZ_GENE_ID FROM mutation " + - //"INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE SAMPLE_ID IN ('" + - org.apache.commons.lang3.StringUtils.join(targetSampleList, "','") + - "') AND GENETIC_PROFILE_ID = ? AND mutation.ENTREZ_GENE_ID IN ('" + - org.apache.commons.lang3.StringUtils.join(entrezGeneIds, "','") + "')"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - while (rs.next()) { - String tmpStr = new StringBuilder().append(Integer.toString(rs.getInt("SAMPLE_ID"))).append(Integer.toString(rs.getInt("ENTREZ_GENE_ID"))).toString(); - hm.put(tmpStr, ""); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return hm; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static ArrayList getMutations (int geneticProfileId, int sampleId, - long entrezGeneId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation " + - "INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE SAMPLE_ID = ? AND GENETIC_PROFILE_ID = ? AND mutation.ENTREZ_GENE_ID = ?"); - pstmt.setInt(1, sampleId); - pstmt.setInt(2, geneticProfileId); - pstmt.setLong(3, entrezGeneId); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * Gets all Genes in a Specific Genetic Profile. - * - * @param geneticProfileId Genetic Profile ID. - * @return Set of Canonical Genes. - * @throws DaoException Database Error. - */ - public static Set getGenesInProfile(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - Set geneSet = new HashSet(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT DISTINCT ENTREZ_GENE_ID FROM mutation WHERE GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - while (rs.next()) { - geneSet.add(daoGene.getGene(rs.getLong("ENTREZ_GENE_ID"))); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return geneSet; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static ArrayList getMutations (long entrezGeneId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation " + - "INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE mutation.ENTREZ_GENE_ID = ?"); - pstmt.setLong(1, entrezGeneId); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static ArrayList getMutations (long entrezGeneId, String aminoAcidChange) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation_event " + - "INNER JOIN mutation ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE mutation.ENTREZ_GENE_ID = ? AND PROTEIN_CHANGE = ?"); - pstmt.setLong(1, entrezGeneId); - pstmt.setString(2, aminoAcidChange); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static ArrayList getMutations (int geneticProfileId, int sampleId) throws DaoException { - return getMutations(geneticProfileId, Arrays.asList(Integer.valueOf(sampleId))); - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static ArrayList getMutations (int geneticProfileId, List sampleIds) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation " + - "INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE GENETIC_PROFILE_ID = ? AND SAMPLE_ID in ('"+ StringUtils.join(sampleIds, "','")+"')"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static boolean hasAlleleFrequencyData (int geneticProfileId, int sampleId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT EXISTS (SELECT 1 FROM mutation " + - "WHERE GENETIC_PROFILE_ID = ? AND SAMPLE_ID = ? AND TUMOR_ALT_COUNT>=0 AND TUMOR_REF_COUNT>=0)"); - pstmt.setInt(1, geneticProfileId); - pstmt.setInt(2, sampleId); - rs = pstmt.executeQuery(); - return rs.next() && rs.getInt(1)==1; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static ArrayList getMutations (long entrezGeneId, String aminoAcidChange, int excludeSampleId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation, mutation_event " + - "WHERE mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "AND mutation.ENTREZ_GENE_ID = ? AND PROTEIN_CHANGE = ? AND SAMPLE_ID <> ?"); - pstmt.setLong(1, entrezGeneId); - pstmt.setString(2, aminoAcidChange); - pstmt.setInt(3, excludeSampleId); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * Used by GetMutationData via webservice.do. This use comes out of an effort to - * discontinue the use of the business module. - */ - public static ArrayList getMutations (int geneticProfileId, - long entrezGeneId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation " + - "INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE GENETIC_PROFILE_ID = ? AND mutation.ENTREZ_GENE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - pstmt.setLong(2, entrezGeneId); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - public static ArrayList getAllMutations () throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation " + - "INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID"); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * Similar to getAllMutations(), but filtered by a passed geneticProfileId - * @param geneticProfileId - * @return - * @throws DaoException - * - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static ArrayList getAllMutations (int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - ArrayList mutationList = new ArrayList (); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT * FROM mutation " + - "INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE mutation.GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation mutation = extractMutation(rs); - mutationList.add(mutation); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return mutationList; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Set getAllMutationEvents() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - Set events = new HashSet(); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement("SELECT * FROM mutation_event"); - rs = pstmt.executeQuery(); - while (rs.next()) { - ExtendedMutation.MutationEvent event = extractMutationEvent(rs); - events.add(event); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - return events; - } - - /* - * Returns an existing MutationEvent record from the database or null. - */ - public static ExtendedMutation.MutationEvent getMutationEvent(ExtendedMutation.MutationEvent event) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement("SELECT * from mutation_event WHERE" + - " `ENTREZ_GENE_ID`=?" + - " AND `CHR`=?" + - " AND `START_POSITION`=?" + - " AND `END_POSITION`=?" + - " AND `TUMOR_SEQ_ALLELE`=?" + - " AND `PROTEIN_CHANGE`=?" + - " AND `MUTATION_TYPE`=?"); - pstmt.setLong(1, event.getGene().getEntrezGeneId()); - pstmt.setString(2, event.getChr()); - pstmt.setLong(3, event.getStartPosition()); - pstmt.setLong(4, event.getEndPosition()); - pstmt.setString(5, event.getTumorSeqAllele()); - pstmt.setString(6, event.getProteinChange()); - pstmt.setString(7, event.getMutationType()); - rs = pstmt.executeQuery(); - if (rs.next()) { - return extractMutationEvent(rs); - } - else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - public static long getLargestMutationEventId() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement("SELECT MAX(`MUTATION_EVENT_ID`) FROM `mutation_event`"); - rs = pstmt.executeQuery(); - return rs.next() ? rs.getLong(1) : 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - private static ExtendedMutation extractMutation(ResultSet rs) throws SQLException, DaoException { - try { - ExtendedMutation mutation = new ExtendedMutation(extractMutationEvent(rs)); - mutation.setGeneticProfileId(rs.getInt("GENETIC_PROFILE_ID")); - mutation.setSampleId(rs.getInt("SAMPLE_ID")); - mutation.setSequencingCenter(rs.getString("CENTER")); - mutation.setSequencer(rs.getString("SEQUENCER")); - mutation.setMutationStatus(rs.getString("MUTATION_STATUS")); - mutation.setValidationStatus(rs.getString("VALIDATION_STATUS")); - mutation.setTumorSeqAllele1(rs.getString("TUMOR_SEQ_ALLELE1")); - mutation.setTumorSeqAllele2(rs.getString("TUMOR_SEQ_ALLELE2")); - mutation.setMatchedNormSampleBarcode(rs.getString("MATCHED_NORM_SAMPLE_BARCODE")); - mutation.setMatchNormSeqAllele1(rs.getString("MATCH_NORM_SEQ_ALLELE1")); - mutation.setMatchNormSeqAllele2(rs.getString("MATCH_NORM_SEQ_ALLELE2")); - mutation.setTumorValidationAllele1(rs.getString("TUMOR_VALIDATION_ALLELE1")); - mutation.setTumorValidationAllele2(rs.getString("TUMOR_VALIDATION_ALLELE2")); - mutation.setMatchNormValidationAllele1(rs.getString("MATCH_NORM_VALIDATION_ALLELE1")); - mutation.setMatchNormValidationAllele2(rs.getString("MATCH_NORM_VALIDATION_ALLELE2")); - mutation.setVerificationStatus(rs.getString("VERIFICATION_STATUS")); - mutation.setSequencingPhase(rs.getString("SEQUENCING_PHASE")); - mutation.setSequenceSource(rs.getString("SEQUENCE_SOURCE")); - mutation.setValidationMethod(rs.getString("VALIDATION_METHOD")); - mutation.setScore(rs.getString("SCORE")); - mutation.setBamFile(rs.getString("BAM_FILE")); - // the following checks/set of null is to maintain - // behavior with MutationRepositoryLegacy (mybatis) behavior - // whose use is being retired in this PR - mutation.setTumorAltCount(rs.getInt("TUMOR_ALT_COUNT")); - if (rs.wasNull()) mutation.setTumorAltCount(null); - mutation.setTumorRefCount(rs.getInt("TUMOR_REF_COUNT")); - if (rs.wasNull()) mutation.setTumorRefCount(null); - mutation.setNormalAltCount(rs.getInt("NORMAL_ALT_COUNT")); - if (rs.wasNull()) mutation.setNormalAltCount(null); - mutation.setNormalRefCount(rs.getInt("NORMAL_REF_COUNT")); - if (rs.wasNull()) mutation.setNormalRefCount(null); - mutation.setAnnotationJson(rs.getString("ANNOTATION_JSON")); - return mutation; - } - catch(NullPointerException e) { - throw new DaoException(e); - } - } - - private static ExtendedMutation.MutationEvent extractMutationEvent(ResultSet rs) throws SQLException, DaoException { - ExtendedMutation.MutationEvent event = new ExtendedMutation.MutationEvent(); - event.setMutationEventId(rs.getLong("MUTATION_EVENT_ID")); - long entrezId = rs.getLong("mutation_event.ENTREZ_GENE_ID"); - DaoGeneOptimized aDaoGene = DaoGeneOptimized.getInstance(); - CanonicalGene gene = aDaoGene.getGene(entrezId); - event.setGene(gene); - event.setChr(rs.getString("CHR")); - event.setStartPosition(rs.getLong("START_POSITION")); - event.setEndPosition(rs.getLong("END_POSITION")); - event.setProteinChange(rs.getString("PROTEIN_CHANGE")); - event.setMutationType(rs.getString("MUTATION_TYPE")); - event.setNcbiBuild(rs.getString("NCBI_BUILD")); - event.setStrand(rs.getString("STRAND")); - event.setVariantType(rs.getString("VARIANT_TYPE")); - event.setDbSnpRs(rs.getString("DB_SNP_RS")); - event.setDbSnpValStatus(rs.getString("DB_SNP_VAL_STATUS")); - event.setReferenceAllele(rs.getString("REFERENCE_ALLELE")); - event.setRefseqMrnaId(rs.getString("REFSEQ_MRNA_ID")); - event.setCodonChange(rs.getString("CODON_CHANGE")); - event.setUniprotAccession(rs.getString("UNIPROT_ACCESSION")); - event.setProteinPosStart(rs.getInt("PROTEIN_POS_START")); - event.setProteinPosEnd(rs.getInt("PROTEIN_POS_END")); - event.setCanonicalTranscript(rs.getBoolean("CANONICAL_TRANSCRIPT")); - event.setTumorSeqAllele(rs.getString("TUMOR_SEQ_ALLELE")); - event.setKeyword(rs.getString("KEYWORD")); - return event; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static int getCount() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement("SELECT COUNT(*) FROM mutation"); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * Get significantly mutated genes - * @param profileId - * @param entrezGeneIds - * @param thresholdRecurrence - * @param thresholdNumGenes - * @param selectedCaseIds - * @return - * @throws DaoException - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map> getSMGs(int profileId, Collection entrezGeneIds, - int thresholdRecurrence, int thresholdNumGenes, - Collection selectedCaseIds) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement("SET SESSION group_concat_max_len = 1000000"); - rs = pstmt.executeQuery(); - String sql = "SELECT mutation.ENTREZ_GENE_ID, GROUP_CONCAT(mutation.SAMPLE_ID), COUNT(*), COUNT(*)/`LENGTH` AS count_per_nt" + - " FROM mutation, gene" + - " WHERE mutation.ENTREZ_GENE_ID=gene.ENTREZ_GENE_ID" + - " AND GENETIC_PROFILE_ID=" + profileId + - (entrezGeneIds==null?"":(" AND mutation.ENTREZ_GENE_ID IN("+StringUtils.join(entrezGeneIds,",")+")")) + - (selectedCaseIds==null?"":(" AND mutation.SAMPLE_ID IN("+StringUtils.join(selectedCaseIds,",")+")")) + - " GROUP BY mutation.ENTREZ_GENE_ID" + - (thresholdRecurrence>0?(" HAVING COUNT(*)>="+thresholdRecurrence):"") + - " ORDER BY count_per_nt DESC" + - (thresholdNumGenes>0?(" LIMIT 0,"+thresholdNumGenes):""); - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - Map> map = new HashMap(); - while (rs.next()) { - Map value = new HashMap<>(); - value.put("caseIds", rs.getString(2)); - value.put("count", rs.getString(3)); - map.put(rs.getLong(1), value); - } - return map; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * return the number of all mutations for a profile - * @param profileId - * @return Map < case id, mutation count > - * @throws DaoException - * - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static int countMutationEvents(int profileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT count(DISTINCT `SAMPLE_ID`, `MUTATION_EVENT_ID`) FROM mutation" + - " WHERE `GENETIC_PROFILE_ID`=" + profileId; - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * get events for each sample - * @return Map < sample id, list of event ids > - * @throws DaoException - * - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map> getSamplesWithMutations(Collection eventIds) throws DaoException { - return getSamplesWithMutations(StringUtils.join(eventIds, ",")); - } - - /** - * get events for each sample - * @param concatEventIds event ids concatenated by comma (,) - * @return Map < sample id, list of event ids > - * @throws DaoException - * - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map> getSamplesWithMutations(String concatEventIds) throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT `SAMPLE_ID`, `MUTATION_EVENT_ID` FROM mutation" + - " WHERE `MUTATION_EVENT_ID` IN (" + - concatEventIds + ")"; - pstmt = con.prepareStatement(sql); - Map> map = new HashMap> (); - rs = pstmt.executeQuery(); - while (rs.next()) { - int sampleId = rs.getInt("SAMPLE_ID"); - long eventId = rs.getLong("MUTATION_EVENT_ID"); - Set events = map.get(sampleId); - if (events == null) { - events = new HashSet(); - map.put(sampleId, events); - } - events.add(eventId); - } - return map; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * @return Map < sample, list of event ids > - * @throws DaoException - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map> getSimilarSamplesWithMutationsByKeywords( - Collection eventIds) throws DaoException { - return getSimilarSamplesWithMutationsByKeywords(StringUtils.join(eventIds, ",")); - } - - /** - * @param concatEventIds event ids concatenated by comma (,) - * @return Map < sample, list of event ids > - * @throws DaoException - */ - public static Map> getSimilarSamplesWithMutationsByKeywords( - String concatEventIds) throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT `SAMPLE_ID`, `GENETIC_PROFILE_ID`, me1.`MUTATION_EVENT_ID`" + - " FROM mutation cme, mutation_event me1, mutation_event me2" + - " WHERE me1.`MUTATION_EVENT_ID` IN ("+ concatEventIds + ")" + - " AND me1.`KEYWORD`=me2.`KEYWORD`" + - " AND cme.`MUTATION_EVENT_ID`=me2.`MUTATION_EVENT_ID`"; - pstmt = con.prepareStatement(sql); - Map> map = new HashMap> (); - rs = pstmt.executeQuery(); - while (rs.next()) { - Sample sample = DaoSample.getSampleById(rs.getInt("SAMPLE_ID")); - long eventId = rs.getLong("MUTATION_EVENT_ID"); - Set events = map.get(sample); - if (events == null) { - events = new HashSet(); - map.put(sample, events); - } - events.add(eventId); - } - return map; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * @param entrezGeneIds event ids concatenated by comma (,) - * @return Map < sample, list of event ids > - * @throws DaoException - * - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map> getSimilarSamplesWithMutatedGenes( - Collection entrezGeneIds) throws DaoException { - if (entrezGeneIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT `SAMPLE_ID`, `GENETIC_PROFILE_ID`, `ENTREZ_GENE_ID`" + - " FROM mutation" + - " WHERE `ENTREZ_GENE_ID` IN ("+ StringUtils.join(entrezGeneIds,",") + ")"; - pstmt = con.prepareStatement(sql); - Map> map = new HashMap> (); - rs = pstmt.executeQuery(); - while (rs.next()) { - Sample sample = DaoSample.getSampleById(rs.getInt("SAMPLE_ID")); - long entrez = rs.getLong("ENTREZ_GENE_ID"); - Set genes = map.get(sample); - if (genes == null) { - genes = new HashSet(); - map.put(sample, genes); - } - genes.add(entrez); - } - return map; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map countSamplesWithMutationEvents(Collection eventIds, int profileId) throws DaoException { - return countSamplesWithMutationEvents(StringUtils.join(eventIds, ","), profileId); - } - - /** - * return the number of samples for each mutation event - * @param concatEventIds - * @param profileId - * @return Map < event id, sampleCount > - * @throws DaoException - * - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map countSamplesWithMutationEvents(String concatEventIds, int profileId) throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT `MUTATION_EVENT_ID`, count(DISTINCT `SAMPLE_ID`) FROM mutation" + - " WHERE `GENETIC_PROFILE_ID`=" + profileId + - " AND `MUTATION_EVENT_ID` IN (" + - concatEventIds + - ") GROUP BY `MUTATION_EVENT_ID`"; - pstmt = con.prepareStatement(sql); - Map map = new HashMap(); - rs = pstmt.executeQuery(); - while (rs.next()) { - map.put(rs.getLong(1), rs.getInt(2)); - } - return map; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map countSamplesWithMutatedGenes(Collection entrezGeneIds, int profileId) throws DaoException { - return countSamplesWithMutatedGenes(StringUtils.join(entrezGeneIds, ","), profileId); - } - - /** - * return the number of samples for each mutated genes - * @param concatEntrezGeneIds - * @param profileId - * @return Map < entrez, sampleCount > - * @throws DaoException - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map countSamplesWithMutatedGenes(String concatEntrezGeneIds, int profileId) throws DaoException { - if (concatEntrezGeneIds.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT ENTREZ_GENE_ID, count(DISTINCT SAMPLE_ID)" + - " FROM mutation" + - " WHERE GENETIC_PROFILE_ID=" + profileId + - " AND ENTREZ_GENE_ID IN (" + - concatEntrezGeneIds + - ") GROUP BY `ENTREZ_GENE_ID`"; - pstmt = con.prepareStatement(sql); - Map map = new HashMap(); - rs = pstmt.executeQuery(); - while (rs.next()) { - map.put(rs.getLong(1), rs.getInt(2)); - } - return map; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Map countSamplesWithKeywords(Collection keywords, int profileId) throws DaoException { - if (keywords.isEmpty()) { - return Collections.emptyMap(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT KEYWORD, count(DISTINCT SAMPLE_ID)" + - " FROM mutation, mutation_event" + - " WHERE GENETIC_PROFILE_ID=" + profileId + - " AND mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID" + - " AND KEYWORD IN ('" + - StringUtils.join(keywords,"','") + - "') GROUP BY `KEYWORD`"; - pstmt = con.prepareStatement(sql); - Map map = new HashMap(); - rs = pstmt.executeQuery(); - while (rs.next()) { - map.put(rs.getString(1), rs.getInt(2)); - } - return map; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * - * Counts all the samples in each cancer study in the collection of geneticProfileIds by mutation keyword - * - * @param keywords - * @param internalProfileIds - * @return Collection of Maps {"keyword" , "hugo" , "cancer_study" , "count"} where cancer_study == cancerStudy.getName(); - * @throws DaoException - * @author Gideon Dresdner - */ - public static Collection> countSamplesWithKeywords(Collection keywords, Collection internalProfileIds) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT KEYWORD, GENETIC_PROFILE_ID, mutation.ENTREZ_GENE_ID, count(DISTINCT SAMPLE_ID) FROM mutation, mutation_event " + - "WHERE GENETIC_PROFILE_ID IN (" + StringUtils.join(internalProfileIds, ",") + ") " + - "AND mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "AND KEYWORD IN ('" + StringUtils.join(keywords, "','") + "') " + - "GROUP BY KEYWORD, GENETIC_PROFILE_ID, mutation.ENTREZ_GENE_ID"; - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - Collection> data = new ArrayList>(); - while (rs.next()) { - Map d = new HashMap(); - String keyword = rs.getString(1); - Integer geneticProfileId = rs.getInt(2); - Long entrez = rs.getLong(3); - Integer count = rs.getInt(4); - // this is computing a join and in not optimal - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - Integer cancerStudyId = geneticProfile.getCancerStudyId(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - String name = cancerStudy.getName(); - String cancerType = cancerStudy.getTypeOfCancerId(); - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene(entrez); - String hugo = gene.getHugoGeneSymbolAllCaps(); - d.put("keyword", keyword); - d.put("hugo", hugo); - d.put("cancer_study", name); - d.put("cancer_type", cancerType); - d.put("count", count); - data.add(d); - } - return data; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * - * Counts up all the samples that have any mutation in a gene by genomic profile (ids) - * - * @param hugos - * @param internalProfileIds - * @return Collection of Maps {"hugo" , "cancer_study" , "count"} where cancer_study == cancerStudy.getName(); - * and gene is the hugo gene symbol. - * - * @throws DaoException - * @author Gideon Dresdner - */ - public static Collection> countSamplesWithGenes(Collection hugos, Collection internalProfileIds) throws DaoException { - // convert hugos to entrezs - // and simultaneously construct a map to turn them back into hugo gene symbols later - List entrezs = new ArrayList(); - Map entrez2CanonicalGene = new HashMap(); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - for (String hugo : hugos) { - CanonicalGene canonicalGene = daoGeneOptimized.getGene(hugo); - Long entrez = canonicalGene.getEntrezGeneId(); - entrezs.add(entrez); - entrez2CanonicalGene.put(entrez, canonicalGene); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "select mutation.ENTREZ_GENE_ID, mutation.GENETIC_PROFILE_ID, count(distinct SAMPLE_ID) from mutation, mutation_event\n" + - "where GENETIC_PROFILE_ID in (" + StringUtils.join(internalProfileIds, ",") + ")\n" + - "and mutation.ENTREZ_GENE_ID in (" + StringUtils.join(entrezs, ",") + ")\n" + - "and mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID\n" + - "group by ENTREZ_GENE_ID, GENETIC_PROFILE_ID"; - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - Collection> data = new ArrayList>(); - while (rs.next()) { - Map d = new HashMap(); - Long entrez = rs.getLong(1); - Integer geneticProfileId = rs.getInt(2); - Integer count = rs.getInt(3); - // can you get a cancerStudy's name? - // this is computing a join and in not optimal - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - Integer cancerStudyId = geneticProfile.getCancerStudyId(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - String name = cancerStudy.getName(); - String cancerType = cancerStudy.getTypeOfCancerId(); - CanonicalGene canonicalGene = entrez2CanonicalGene.get(entrez); - String hugo = canonicalGene.getHugoGeneSymbolAllCaps(); - d.put("hugo", hugo); - d.put("cancer_study", name); - d.put("cancer_type", cancerType); - d.put("count", count); - data.add(d); - } - return data; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - public static Collection> countSamplesWithProteinChanges( - Collection proteinChanges, Collection internalProfileIds) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT PROTEIN_CHANGE, GENETIC_PROFILE_ID, mutation.ENTREZ_GENE_ID, count(DISTINCT SAMPLE_ID) FROM mutation, mutation_event " + - "WHERE GENETIC_PROFILE_ID IN (" + StringUtils.join(internalProfileIds, ",") + ") " + - "AND mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "AND PROTEIN_CHANGE IN ('" + StringUtils.join(proteinChanges, "','") + "') " + - "GROUP BY PROTEIN_CHANGE, GENETIC_PROFILE_ID, mutation.ENTREZ_GENE_ID"; - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - Collection> data = new ArrayList>(); - while (rs.next()) { - Map d = new HashMap(); - String proteinChange = rs.getString(1); - Integer geneticProfileId = rs.getInt(2); - Long entrez = rs.getLong(3); - Integer count = rs.getInt(4); - // can you get a cancerStudy's name? - // this is computing a join and in not optimal - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - Integer cancerStudyId = geneticProfile.getCancerStudyId(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - String name = cancerStudy.getName(); - String cancerType = cancerStudy.getTypeOfCancerId(); - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene(entrez); - String hugo = gene.getHugoGeneSymbolAllCaps(); - d.put("protein_change", proteinChange); - d.put("hugo", hugo); - d.put("cancer_study", name); - d.put("cancer_type", cancerType); - d.put("count", count); - data.add(d); - } - return data; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - public static Collection> countSamplesWithProteinPosStarts( - Collection proteinPosStarts, Collection internalProfileIds) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - //performance fix: mutation table contains geneId; by filtering on a geneId set before table join, the temporary table needed is smaller. - //a geneticProfileId set filter alone can in some cases let almost all mutations into the temporary table - HashSet geneIdSet = new HashSet(); - if (proteinPosStarts != null) { - Pattern geneIdPattern = Pattern.compile("\\(\\s*(\\d+)\\s*,"); - for (String proteinPos : proteinPosStarts) { - Matcher geneIdMatcher = geneIdPattern.matcher(proteinPos); - if (geneIdMatcher.find()) { - geneIdSet.add(geneIdMatcher.group(1)); - } - } - } - if (geneIdSet.size() == 0 || internalProfileIds.size() == 0) return new ArrayList>(); //empty IN() clause would be a SQL error below - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT PROTEIN_POS_START, GENETIC_PROFILE_ID, mutation.ENTREZ_GENE_ID, count(DISTINCT SAMPLE_ID) " + - "FROM mutation INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID=mutation_event.MUTATION_EVENT_ID " + - "WHERE mutation.ENTREZ_GENE_ID IN (" + StringUtils.join(geneIdSet, ",") + ") " + - "AND GENETIC_PROFILE_ID IN (" + StringUtils.join(internalProfileIds, ",") + ") " + - "AND (mutation.ENTREZ_GENE_ID, PROTEIN_POS_START) IN (" + StringUtils.join(proteinPosStarts, ",") + ") " + - "GROUP BY PROTEIN_POS_START, GENETIC_PROFILE_ID, mutation.ENTREZ_GENE_ID"; - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - Collection> data = new ArrayList>(); - while (rs.next()) { - Map d = new HashMap(); - String proteinPosStart = rs.getString(1); - Integer geneticProfileId = rs.getInt(2); - Long entrez = rs.getLong(3); - Integer count = rs.getInt(4); - // can you get a cancerStudy's name? - // this is computing a join and in not optimal - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - Integer cancerStudyId = geneticProfile.getCancerStudyId(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - String name = cancerStudy.getName(); - String cancerType = cancerStudy.getTypeOfCancerId(); - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene(entrez); - String hugo = gene.getHugoGeneSymbolAllCaps(); - d.put("protein_pos_start", proteinPosStart); - d.put("protein_start_with_hugo", hugo+"_"+proteinPosStart); - d.put("hugo", hugo); - d.put("cancer_study", name); - d.put("cancer_type", cancerType); - d.put("count", count); - data.add(d); - } - return data; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Set getGenesOfMutations( - Collection eventIds, int profileId) throws DaoException { - return getGenesOfMutations(StringUtils.join(eventIds, ","), profileId); - } - - /** - * return entrez gene ids of the mutations specified by their mutaiton event ids. - * @param concatEventIds - * @param profileId - * @return - * @throws DaoException - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Set getGenesOfMutations(String concatEventIds, int profileId) - throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptySet(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT DISTINCT ENTREZ_GENE_ID FROM mutation_event " + - "WHERE MUTATION_EVENT_ID in (" + concatEventIds + ")"; - pstmt = con.prepareStatement(sql); - Set set = new HashSet(); - rs = pstmt.executeQuery(); - while (rs.next()) { - set.add(rs.getLong(1)); - } - return set; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * return keywords of the mutations specified by their mutaiton event ids. - * @param concatEventIds - * @param profileId - * @return - * @throws DaoException - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static Set getKeywordsOfMutations(String concatEventIds, int profileId) - throws DaoException { - if (concatEventIds.isEmpty()) { - return Collections.emptySet(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - String sql = "SELECT DISTINCT KEYWORD FROM mutation_event " + - "WHERE MUTATION_EVENT_ID in (" + concatEventIds + ")"; - pstmt = con.prepareStatement(sql); - Set set = new HashSet(); - rs = pstmt.executeQuery(); - while (rs.next()) { - set.add(rs.getString(1)); - } - return set; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - protected static String boolToStr(boolean value) - { - return value ? "1" : "0"; - } - - /** - * @deprecated We believe that this method is no longer called by any part of the codebase, and it will soon be deleted. - */ - @Deprecated - public static void deleteAllRecordsInGeneticProfile(long geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement("DELETE from mutation WHERE GENETIC_PROFILE_ID=?"); - pstmt.setLong(1, geneticProfileId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE mutation"); - pstmt.executeUpdate(); - pstmt = con.prepareStatement("TRUNCATE TABLE mutation_event"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * Gets all tiers in alphabetical order. - * - * @param - * @return Ordered list of tiers. - * @throws DaoException Database Error. - */ - public static List getTiers(String _cancerStudyStableIds) throws DaoException { - String[] cancerStudyStableIds = _cancerStudyStableIds.split(","); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - List tiers = new ArrayList(); - ArrayList geneticProfiles = new ArrayList<>(); - for (String cancerStudyStableId: cancerStudyStableIds) { - geneticProfiles.addAll(DaoGeneticProfile.getAllGeneticProfiles( - DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId).getInternalId() - )); - } - for (GeneticProfile geneticProfile : geneticProfiles) { - if (geneticProfile.getGeneticAlterationType().equals(GeneticAlterationType.MUTATION_EXTENDED)) { - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT DISTINCT DRIVER_TIERS_FILTER FROM alteration_driver_annotation " - + "WHERE DRIVER_TIERS_FILTER is not NULL AND DRIVER_TIERS_FILTER <> '' AND GENETIC_PROFILE_ID=? " - + "ORDER BY DRIVER_TIERS_FILTER"); - pstmt.setLong(1, geneticProfile.getGeneticProfileId()); - rs = pstmt.executeQuery(); - while (rs.next()) { - tiers.add(rs.getString("DRIVER_TIERS_FILTER")); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - } - - return tiers; - } - - /** - * Returns the number of tiers in the cancer study.. - * - * @param - * @return Ordered list of tiers. - * @throws DaoException Database Error. - */ - public static int numTiers(String _cancerStudyStableIds) throws DaoException { - List tiers = getTiers(_cancerStudyStableIds); - return tiers.size(); - } - - /** - * Returns true if there are "Putative_Driver" or "Putative_Passenger" values in the - * binary annotation column. Otherwise, it returns false. - * - * @param - * @return Ordered list of tiers. - * @throws DaoException Database Error. - */ - public static boolean hasDriverAnnotations(String _cancerStudyStableIds) throws DaoException { - String[] cancerStudyStableIds = _cancerStudyStableIds.split(","); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - List driverValues = new ArrayList(); - ArrayList geneticProfiles = new ArrayList<>(); - for (String cancerStudyStableId: cancerStudyStableIds) { - geneticProfiles.addAll( - DaoGeneticProfile.getAllGeneticProfiles(DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId).getInternalId()) - ); - } - for (GeneticProfile geneticProfile : geneticProfiles) { - if (geneticProfile.getGeneticAlterationType().equals(GeneticAlterationType.MUTATION_EXTENDED)) { - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT DISTINCT DRIVER_FILTER FROM alteration_driver_annotation " - + "WHERE DRIVER_FILTER is not NULL AND DRIVER_FILTER <> '' AND GENETIC_PROFILE_ID=? "); - pstmt.setLong(1, geneticProfile.getGeneticProfileId()); - rs = pstmt.executeQuery(); - while (rs.next()) { - driverValues.add(rs.getString("DRIVER_FILTER")); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - } - if (driverValues.size() > 0) { - return true; - } - return false; - } - - /** - * Returns true if there are duplicates in `mutation_event`. - * Compares count(*) of records in `mutation_event` against the count(distinct ...) - * records based on the fields specified below. - * - * If the counts do not match then SQL statement returns 0 (false), otherwise returns 1 (true). - * @return - * @throws DaoException - */ - public static boolean hasDuplicateMutationEvents() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - Integer sqlQueryResult = -1; // default = -1 to indicate mismatched counts from db table - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement( - "SELECT " - + "(SELECT COUNT(*) FROM mutation_event) = " - + "(SELECT COUNT(DISTINCT ENTREZ_GENE_ID, CHR, START_POSITION, END_POSITION, TUMOR_SEQ_ALLELE, PROTEIN_CHANGE, MUTATION_TYPE) FROM mutation_event)"); - rs = pstmt.executeQuery(); - if (rs.next()) { - sqlQueryResult = rs.getInt(1); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - if (sqlQueryResult == -1) { - throw new DaoException("Error occurred while executing SQL query to detect duplicate records in `mutation_event`"); - } - return !(sqlQueryResult > 0); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoPatient.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoPatient.java deleted file mode 100644 index fecc868bd88..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoPatient.java +++ /dev/null @@ -1,218 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import org.apache.commons.collections4.map.MultiKeyMap; - -import java.sql.*; -import java.util.*; - -/** - * DAO to `patient`. - * - * @author Benjamin Gross - */ -public class DaoPatient { - - private static final String SAMPLE_COUNT_ATTR_ID = "SAMPLE_COUNT"; - - private static final Map byInternalId = new HashMap(); - private static final Map> byInternalCancerStudyId = new HashMap>(); - private static final MultiKeyMap byCancerIdAndStablePatientId = new MultiKeyMap(); - - private static void clearCache() - { - byInternalId.clear(); - byInternalCancerStudyId.clear(); - byCancerIdAndStablePatientId.clear(); - } - - public static synchronized void reCache() - { - clearCache(); - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoPatient.class); - pstmt = con.prepareStatement("SELECT * FROM patient"); - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - while (rs.next()) { - Patient p = extractPatient(rs); - if (p != null) { - cachePatient(p, p.getCancerStudy().getInternalId()); - } - } - } - catch (SQLException e) { - e.printStackTrace(); - } - finally { - JdbcUtil.closeAll(DaoPatient.class, con, pstmt, rs); - } - } - - public static void cachePatient(Patient patient, int cancerStudyId) - { - if (!byInternalId.containsKey(patient.getInternalId())) { - byInternalId.put(patient.getInternalId(), patient); - } - if (byInternalCancerStudyId.containsKey(patient.getCancerStudy().getInternalId())) { - byInternalCancerStudyId.get(patient.getCancerStudy().getInternalId()).add(patient); - } - else { - Set patientList = new HashSet(); - patientList.add(patient); - byInternalCancerStudyId.put(patient.getCancerStudy().getInternalId(), patientList); - } - - if (!byCancerIdAndStablePatientId.containsKey(cancerStudyId, patient.getStableId())) { - byCancerIdAndStablePatientId.put(cancerStudyId, patient.getStableId(), patient); - } - } - - public static int addPatient(Patient patient) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoPatient.class); - pstmt = con.prepareStatement("INSERT INTO patient (`STABLE_ID`, `CANCER_STUDY_ID`) VALUES (?,?)", - Statement.RETURN_GENERATED_KEYS); - pstmt.setString(1, patient.getStableId()); - pstmt.setInt(2, patient.getCancerStudy().getInternalId()); - pstmt.executeUpdate(); - rs = pstmt.getGeneratedKeys(); - if (rs.next()) { - cachePatient(new Patient(patient.getCancerStudy(), patient.getStableId(), rs.getInt(1)), patient.getCancerStudy().getInternalId()); - return rs.getInt(1); - } - return -1; - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoPatient.class, con, pstmt, rs); - } - } - - public static Patient getPatientById(int internalId) - { - return byInternalId.get(internalId); - } - - public static Patient getPatientByCancerStudyAndPatientId(int cancerStudyId, String stablePatientId) - { - return (Patient)byCancerIdAndStablePatientId.get(cancerStudyId, stablePatientId); - } - - public static Set getPatientsByCancerStudyId(int cancerStudyId) - { - return byInternalCancerStudyId.get(cancerStudyId); - } - - public static List getAllPatients() - { - return (byInternalId.isEmpty()) ? Collections.emptyList() : - new ArrayList(byInternalId.values()); - } - - public static void deleteAllRecords() throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoPatient.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE patient"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoPatient.class, con, pstmt, rs); - } - - clearCache(); - } - - public static void createSampleCountClinicalData(int cancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoCopyNumberSegment.class); - pstmt = con.prepareStatement( - "REPLACE `clinical_patient`" + - "SELECT patient.`INTERNAL_ID`, 'SAMPLE_COUNT', COUNT(*) FROM sample " + - "INNER JOIN patient ON sample.`PATIENT_ID` = patient.`INTERNAL_ID`" + - "WHERE patient.`CANCER_STUDY_ID`=? " + - "GROUP BY patient.`INTERNAL_ID`;"); - pstmt.setInt(1, cancerStudyId); - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum(SAMPLE_COUNT_ATTR_ID, cancerStudyId); - if (clinicalAttribute == null) { - ClinicalAttribute attr = new ClinicalAttribute(SAMPLE_COUNT_ATTR_ID, "Number of Samples Per Patient", - "Number of Samples Per Patient", "STRING", true, "1", cancerStudyId); - DaoClinicalAttributeMeta.addDatum(attr); - } - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoCopyNumberSegment.class, con, pstmt, rs); - } - } - - private static Patient extractPatient(ResultSet rs) throws SQLException - { - try { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(rs.getInt("CANCER_STUDY_ID")); - if (cancerStudy == null) return null; - return new Patient(cancerStudy, - rs.getString("STABLE_ID"), - rs.getInt("INTERNAL_ID")); - } - catch (DaoException e) { - throw new SQLException(e); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoReferenceGenome.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoReferenceGenome.java deleted file mode 100644 index 1d9bb4990d5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoReferenceGenome.java +++ /dev/null @@ -1,261 +0,0 @@ -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.SpringUtil; - -import java.util.*; - - -/** - * Adding or updating Reference Genomes used by molecular profiling - * @author Kelsey Zhu - */ -public final class DaoReferenceGenome { - - private static final Map byGenomeBuild = new HashMap(); - private static final Map byGenomeName = new HashMap(); - private static final Map byGenomeInternalId = new HashMap(); - private static final Map genomeInternalIds = new HashMap(); - - static { - SpringUtil.initDataSource(); - reCache(); - } - - private static synchronized void clearCache() { - byGenomeBuild.clear(); - byGenomeInternalId.clear(); - byGenomeName.clear(); - genomeInternalIds.clear(); - } - - private static synchronized void addCache(ReferenceGenome referenceGenome) { - byGenomeBuild.put(referenceGenome.getBuildName(), referenceGenome); - byGenomeName.put(referenceGenome.getGenomeName(), referenceGenome); - byGenomeInternalId.put(referenceGenome.getReferenceGenomeId(), referenceGenome); - genomeInternalIds.put(referenceGenome.getBuildName(), referenceGenome.getReferenceGenomeId()); - genomeInternalIds.put(referenceGenome.getGenomeName(), referenceGenome.getReferenceGenomeId()); - } - - private static synchronized void reCache() { - clearCache(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoReferenceGenome.class); - pstmt = con.prepareStatement("SELECT * FROM reference_genome"); - rs = pstmt.executeQuery(); - while (rs.next()) { - ReferenceGenome referenceGenome = extractReferenceGenome(rs); - addCache(referenceGenome); - } - } catch (SQLException e) { - e.printStackTrace(); - } finally { - JdbcUtil.closeAll(DaoReferenceGenome.class, con, pstmt, rs); - } - } - - /** - * Add a new reference genome to the Database. - * @param referenceGenome Reference Genome. - * @throws DaoException Database Error. - */ - public static void addReferenceGenome(ReferenceGenome referenceGenome) throws DaoException { - reCache(); - addReferenceGenome(referenceGenome, false); - } - - /** - * Add a new reference genome to the Database. - * @param referenceGenome - * @param overwrite if true, overwrite if exist. - * @throws DaoException - */ - public static void addReferenceGenome(ReferenceGenome referenceGenome, boolean overwrite) throws DaoException { - - ReferenceGenome existing = getReferenceGenomeByInternalId(referenceGenome.getReferenceGenomeId()); - if (existing!=null) { - if (!overwrite) { - throw new DaoException("Reference Genome " + referenceGenome.getBuildName() + "is already imported."); - } else { - updateReferenceGenome(referenceGenome); - } - } - else { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoReferenceGenome.class); - pstmt = con.prepareStatement("INSERT INTO reference_genome " + - "( `species`, `name`, " - + "`build_name`, `genome_size`, `URL`, " - + " `release_date` ) VALUES (?,?,?,?,?,?)", - Statement.RETURN_GENERATED_KEYS); - pstmt.setString(1, referenceGenome.getSpecies()); - pstmt.setString(2, referenceGenome.getGenomeName()); - pstmt.setString(3, referenceGenome.getBuildName()); - pstmt.setLong(4, referenceGenome.getGenomeSize()); - pstmt.setString(5, referenceGenome.getUrl()); - pstmt.setDate(6, new java.sql.Date(referenceGenome.getReleaseDate().getTime())); - if (pstmt.executeUpdate() != 0 ) { - rs = pstmt.getGeneratedKeys(); - if (rs.next()) { - int autoId = rs.getInt(1); - referenceGenome.setReferenceGenomeId(autoId); - } - // update reference cache - addCache(referenceGenome); - } else { - throw new DaoException("attempt to add new referenceGenome record failed"); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoReferenceGenome.class, con, pstmt, rs); - } - } - } - - /** - * Deletes all Reference Genomes. - * @throws DaoException Database Error. - */ - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoReferenceGenome.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE reference_genome"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - // clear cache - clearCache(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoReferenceGenome.class, con, pstmt, rs); - } - } - - /** - * Update existing reference genome. - * @param referenceGenome Reference Genome Object - * @throws DaoException - */ - public static void updateReferenceGenome(ReferenceGenome referenceGenome) throws DaoException { - - ReferenceGenome existing = getReferenceGenomeByInternalId(referenceGenome.getReferenceGenomeId()); - if (existing==null) { - throw new DaoException("Reference Genome " + referenceGenome.getBuildName() + "does not exist."); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoReferenceGenome.class); - pstmt = con.prepareStatement("UPDATE reference_genome " + - "SET `species`=?, `name`=?, " - + "`build_name`=?, `genome_size`=?, `URL`=?, " - + " `release_date`=? WHERE `reference_genome_id`=?"); - pstmt.setString(1, referenceGenome.getSpecies()); - pstmt.setString(2, referenceGenome.getGenomeName()); - pstmt.setString(3, referenceGenome.getBuildName()); - pstmt.setLong(4, referenceGenome.getGenomeSize()); - pstmt.setString(5, referenceGenome.getUrl()); - pstmt.setDate(6, new java.sql.Date(referenceGenome.getReleaseDate().getTime())); - pstmt.setInt(7, referenceGenome.getReferenceGenomeId()); - if (pstmt.executeUpdate() != 0) { - // update reference cache - reCache(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoReferenceGenome.class, con, pstmt, rs); - } - } - - /** - * Retrieve reference genome by internal DB ID - * @param internalId Reference Genome internal DB ID - * @throws DaoException Database Error. - */ - - public static ReferenceGenome getReferenceGenomeByInternalId(int internalId) throws DaoException { - ReferenceGenome genome = byGenomeInternalId.get(internalId); - return genome; - } - - /** - * Retrieve reference genome by genome build name - * @param buildName Reference Genome build name - * @throws DaoException Database Error. - */ - - public static ReferenceGenome getReferenceGenomeByBuildName(String buildName) throws DaoException { - return byGenomeBuild.get(buildName); - } - - /** - * Retrieve reference genome by genome build name - * @param genomeName Reference Genome build name - * @throws DaoException Database Error. - */ - - public static ReferenceGenome getReferenceGenomeByGenomeName(String genomeName) throws DaoException { - return byGenomeName.get(genomeName); - } - - /** - * Retrieve reference genome of interest by genome name or genome assembly name - * @param name Name of Reference Genome or Genome Assembly - * @throws DaoException Database Error. - */ - public static int getReferenceGenomeIdByName(String name) throws DaoException { - Integer referenceGenomeId = genomeInternalIds.get(name); - if (referenceGenomeId == null) { - return -1; - } else { - return referenceGenomeId; - } - } - - /** - * Extracts Reference Genome JDBC Results. - * @param rs JDBC Result Set - */ - private static ReferenceGenome extractReferenceGenome(ResultSet rs) throws SQLException { - ReferenceGenome referenceGenome = new ReferenceGenome( - rs.getString("NAME"), - rs.getString("SPECIES"), - rs.getString("BUILD_NAME")); - referenceGenome.setReferenceGenomeId(rs.getInt("REFERENCE_GENOME_ID")); - referenceGenome.setGenomeSize(rs.getLong("GENOME_SIZE")); - referenceGenome.setReleaseDate(rs.getDate("RELEASE_DATE")); - referenceGenome.setUrl(rs.getString("URL")); - return referenceGenome; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoReferenceGenomeGene.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoReferenceGenomeGene.java deleted file mode 100644 index 3ca808aefb1..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoReferenceGenomeGene.java +++ /dev/null @@ -1,168 +0,0 @@ -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.ReferenceGenomeGene; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; - -/** - * Data Access Object to Reference Genome Gene Table - * Make a Singleton Class accessed by all objects throughout the system - * @author Kelsey Zhu - */ -public class DaoReferenceGenomeGene { - private static DaoReferenceGenomeGene instance = null; - - public static DaoReferenceGenomeGene getInstance() { - if (instance == null) { - instance = new DaoReferenceGenomeGene(); - } - return instance; - } - - /** - * Update Reference Genome Gene in the Database. - * @param gene Reference Genome Gene - */ - public void updateGene(ReferenceGenomeGene gene) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - MySQLbulkLoader.bulkLoadOff(); - con = JdbcUtil.getDbConnection(DaoReferenceGenome.class); - pstmt = con.prepareStatement - ("UPDATE reference_genome_gene SET `START`=?, `END`=? WHERE `ENTREZ_GENE_ID`=? AND `REFERENCE_GENOME_ID`=?"); - pstmt.setLong(1, gene.getStart()); - pstmt.setLong(2, gene.getEnd()); - pstmt.setLong(3, gene.getEntrezGeneId()); - pstmt.setInt(4, gene.getReferenceGenomeId()); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - MySQLbulkLoader.bulkLoadOn(); - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - /** - * Adds a new reference genome gene to the Database or update the existing one. - * @param gene Reference Genome Gene Object. - * @throws DaoException Database Error. - */ - public void addOrUpdateGene(ReferenceGenomeGene gene) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - ReferenceGenomeGene existingGene = getGene(gene.getEntrezGeneId(), gene.getReferenceGenomeId()); - - if (existingGene == null) { - //add gene, referring to this genetic entity - con = JdbcUtil.getDbConnection(DaoGene.class); - pstmt = con.prepareStatement - ("INSERT INTO `reference_genome_gene` (`ENTREZ_GENE_ID`, `REFERENCE_GENOME_ID`,`CHR`,`CYTOBAND`,`START`,`END`) " - + "VALUES (?,?,?,?,?,?)"); - pstmt.setLong(1, gene.getEntrezGeneId()); - pstmt.setInt(2, gene.getReferenceGenomeId()); - pstmt.setString(3, gene.getChr()); - pstmt.setString(4, gene.getCytoband()); - pstmt.setLong(5, gene.getStart()); - pstmt.setLong(6, gene.getEnd()); - pstmt.executeUpdate(); - } - else { - updateGene(existingGene); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - - /** - * Gets the Reference Genome Gene with the Specified Entrez Gene ID. - * @param entrezGeneId ENTRZ GENE ID. - * @return Reference Genome Gene Object. - * @throws DaoException Database Error. - */ - public ReferenceGenomeGene getGene(long entrezGeneId, int referenceGenomeId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoReferenceGenomeGene.class); - pstmt = con.prepareStatement - ("SELECT * FROM `reference_genome_gene` WHERE `ENTREZ_GENE_ID` = ? AND `REFERENCE_GENOME_ID` = ?"); - pstmt.setLong(1, entrezGeneId); - pstmt.setInt(2, referenceGenomeId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return extractGene(rs); - } else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } - - private ReferenceGenomeGene extractGene(ResultSet rs) throws SQLException, DaoException { - int entrezGeneId = rs.getInt("ENTREZ_GENE_ID"); - int reference_genome_id = rs.getInt("REFERENCE_GENOME_ID"); - String cytoband = rs.getString("CYTOBAND"); - ReferenceGenomeGene gene = new ReferenceGenomeGene(entrezGeneId, reference_genome_id); - gene.setChr(rs.getString("CHR")); - gene.setCytoband(rs.getString("CYTOBAND")); - gene.setStart(rs.getLong("START")); - gene.setEnd(rs.getLong("END")); - return gene; - } - - /** - * Deletes the Reference Genome Gene for a given Entrez Gene ID and Referece Genome ID. - * @param entrezGeneId ENTREZ GENE ID - * @param referenceGenomeId REFERENCE GENOME ID - */ - public void deleteGene(int entrezGeneId, int referenceGenomeId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoReferenceGenomeGene.class); - pstmt = con.prepareStatement("DELETE FROM `reference_genome_gene` WHERE ENTREZ_GENE_ID=? AND REFERENCE_GENOME_ID=?"); - pstmt.setLong(1, entrezGeneId); - pstmt.setInt(2, referenceGenomeId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGene.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoResourceData.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoResourceData.java deleted file mode 100644 index c0346d63a3d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoResourceData.java +++ /dev/null @@ -1,116 +0,0 @@ -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; -import org.apache.commons.lang3.StringUtils; -import java.sql.*; -import java.util.*; - -/** - * Data Access Object for `resource` tables - */ -public final class DaoResourceData { - - public static final String RESOURCE_SAMPLE_TABLE = "resource_sample"; - public static final String RESOURCE_PATIENT_TABLE = "resource_patient"; - public static final String RESOURCE_STUDY_TABLE = "resource_study"; - - private static final String SAMPLE_INSERT = "INSERT INTO " + RESOURCE_SAMPLE_TABLE - + "(`INTERNAL_ID`,`RESOURCE_ID`,`URL` VALUES(?,?,?)"; - private static final String PATIENT_INSERT = "INSERT INTO " + RESOURCE_PATIENT_TABLE - + "(`INTERNAL_ID`,`RESOURCE_ID`,`URL` VALUES(?,?,?)"; - private static final String STUDY_INSERT = "INSERT INTO " + RESOURCE_STUDY_TABLE - + "(`INTERNAL_ID`,`RESOURCE_ID`,`URL` VALUES(?,?,?)"; - - private DaoResourceData() { - } - - public static int addSampleDatum(int internalSampleId, String resourceId, String url) throws DaoException { - return addDatum(SAMPLE_INSERT, RESOURCE_SAMPLE_TABLE, internalSampleId, resourceId, url); - } - - public static int addPatientDatum(int internalPatientId, String resourceId, String url) throws DaoException { - return addDatum(PATIENT_INSERT, RESOURCE_PATIENT_TABLE, internalPatientId, resourceId, url); - } - - public static int addStudyDatum(int internalStudyId, String resourceId, String url) throws DaoException { - return addDatum(STUDY_INSERT, RESOURCE_STUDY_TABLE, internalStudyId, resourceId, url); - } - - public static int addDatum(String query, String tableName, int internalId, String resourceId, String url) - throws DaoException { - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.getMySQLbulkLoader(tableName).insertRecord(Integer.toString(internalId), resourceId, url); - return 1; - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoResourceData.class); - - pstmt = con.prepareStatement(query); - pstmt.setInt(1, internalId); - pstmt.setString(2, resourceId); - pstmt.setString(3, url); - - return pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoResourceData.class, con, pstmt, rs); - } - } - - public static List getDataByPatientId(int cancerStudyId, String patientId) throws DaoException - { - List internalIds = new ArrayList(); - internalIds.add(DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId).getInternalId()); - return getDataByInternalIds(cancerStudyId, RESOURCE_PATIENT_TABLE, internalIds); - } - - private static List getDataByInternalIds(int internalCancerStudyId, String table, List internalIds) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - List resources = new ArrayList(); - String sql = ("SELECT * FROM " + table + " WHERE `INTERNAL_ID` IN " + - "(" + generateIdsSql(internalIds) + ")"); - - try { - con = JdbcUtil.getDbConnection(DaoResourceData.class); - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - while (rs.next()) { - resources.add(extract(table, internalCancerStudyId, rs)); - } - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoResourceData.class, con, pstmt, rs); - } - - return resources; - } - - private static String generateIdsSql(Collection ids) { - return "'" + StringUtils.join(ids, "','") + "'"; - } - - private static ResourceBaseData extract(String table, int internalCancerStudyId, ResultSet rs) throws SQLException { - String stableId = getStableIdFromInternalId(table, rs.getInt("INTERNAL_ID")); - return new ResourceBaseData(internalCancerStudyId, stableId, rs.getString("RESOURCE_ID"), rs.getString("URL")); - } - - private static String getStableIdFromInternalId(String table, int internalId) { - if (table.equals(RESOURCE_SAMPLE_TABLE)) { - return DaoSample.getSampleById(internalId).getStableId(); - } else { - return DaoPatient.getPatientById(internalId).getStableId(); - } - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoResourceDefinition.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoResourceDefinition.java deleted file mode 100644 index a8919651d8e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoResourceDefinition.java +++ /dev/null @@ -1,135 +0,0 @@ -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import org.apache.commons.lang3.StringUtils; -import org.cbioportal.model.ResourceType; - -import java.sql.*; -import java.util.*; - -/** - * Data Access Object for `resource_definition` table - */ -public class DaoResourceDefinition { - - public static int addDatum(ResourceDefinition resource) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoResourceDefinition.class); - pstmt = con.prepareStatement("INSERT INTO resource_definition(" + "`RESOURCE_ID`," + "`DISPLAY_NAME`," - + "`DESCRIPTION`," + "`RESOURCE_TYPE`," + "`OPEN_BY_DEFAULT`," + "`PRIORITY`," + "`CANCER_STUDY_ID`)" - + " VALUES(?,?,?,?,?,?,?)"); - pstmt.setString(1, resource.getResourceId()); - pstmt.setString(2, resource.getDisplayName()); - pstmt.setString(3, resource.getDescription()); - pstmt.setString(4, resource.getResourceType().name()); - pstmt.setBoolean(5, resource.isOpenByDefault()); - pstmt.setInt(6, resource.getPriority()); - pstmt.setInt(7, resource.getCancerStudyId()); - return pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoResourceDefinition.class, con, pstmt, rs); - } - } - - private static ResourceDefinition unpack(ResultSet rs) throws SQLException { - return new ResourceDefinition(rs.getString("RESOURCE_ID"), rs.getString("DISPLAY_NAME"), rs.getString("DESCRIPTION"), - ResourceType.valueOf(rs.getString("RESOURCE_TYPE")), rs.getBoolean("OPEN_BY_DEFAULT"), rs.getInt("PRIORITY"), - rs.getInt("CANCER_STUDY_ID")); - } - - public static ResourceDefinition getDatum(String resourceId, Integer cancerStudyId) throws DaoException { - List resources = getDatum(Arrays.asList(resourceId), cancerStudyId); - if (resources.isEmpty()) { - return null; - } - - return resources.get(0); - } - - public static List getDatum(Collection resourceIds, Integer cancerStudyId) - throws DaoException { - if (resourceIds == null || resourceIds.isEmpty()) { - return Collections.emptyList(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoResourceDefinition.class); - - pstmt = con.prepareStatement("SELECT * FROM resource_definition WHERE RESOURCE_ID IN ('" - + StringUtils.join(resourceIds, "','") + "') AND CANCER_STUDY_ID=" + String.valueOf(cancerStudyId)); - - rs = pstmt.executeQuery(); - - List list = new ArrayList(); - while (rs.next()) { - list.add(unpack(rs)); - } - - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoResourceDefinition.class, con, pstmt, rs); - } - } - - public static List getDatum(Collection resourceIds) throws DaoException { - if (resourceIds == null || resourceIds.isEmpty()) { - return Collections.emptyList(); - } - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoResourceDefinition.class); - - pstmt = con.prepareStatement("SELECT * FROM resource_definition WHERE RESOURCE_ID IN ('" - + StringUtils.join(resourceIds, "','") + "')"); - - rs = pstmt.executeQuery(); - - List list = new ArrayList(); - while (rs.next()) { - list.add(unpack(rs)); - } - - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoResourceDefinition.class, con, pstmt, rs); - } - } - - public static List getDatumByStudy(int cancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoResourceDefinition.class); - - pstmt = con.prepareStatement("SELECT * FROM resource_definition WHERE CANCER_STUDY_ID=" + String.valueOf(cancerStudyId)); - - rs = pstmt.executeQuery(); - - List list = new ArrayList(); - while (rs.next()) { - list.add(unpack(rs)); - } - - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoResourceDefinition.class, con, pstmt, rs); - } - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSample.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSample.java deleted file mode 100644 index df4450364ba..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSample.java +++ /dev/null @@ -1,273 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.sql.*; -import java.util.*; - -/** - * DAO to `sample`. - * - * @author Benjamin Gross - */ -public class DaoSample { - - private static final int MISSING_CANCER_STUDY_ID = -1; - - private static final Map byStableId = new HashMap(); - private static final Map byInternalId = new HashMap(); - private static final Map> byInternalPatientAndStableSampleId = new HashMap>(); - private static final Map> byCancerStudyIdAndStableSampleId = new HashMap>(); - - private static void clearCache() - { - byStableId.clear(); - byInternalId.clear(); - byInternalPatientAndStableSampleId.clear(); - byCancerStudyIdAndStableSampleId.clear(); - } - - public static synchronized void reCache() - { - clearCache(); - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSample.class); - pstmt = con.prepareStatement("SELECT * FROM sample"); - rs = pstmt.executeQuery(); - while (rs.next()) { - cacheSample(extractSample(rs)); - } - } - catch (SQLException e) { - e.printStackTrace(); - } - finally { - JdbcUtil.closeAll(DaoSample.class, con, pstmt, rs); - } - } - - private static void cacheSample(Sample sample) - { - cacheSample(sample, getCancerStudyId(sample)); - } - - private static int getCancerStudyId(Sample sample) - { - Patient patient = DaoPatient.getPatientById(sample.getInternalPatientId()); - return (patient == null) ? MISSING_CANCER_STUDY_ID : patient.getCancerStudy().getInternalId(); - } - - private static void cacheSample(Sample sample, int cancerStudyId) - { - if (!byStableId.containsKey(sample.getStableId())) { - byStableId.put(sample.getStableId(), sample); - } - - if (!byInternalId.containsKey(sample.getInternalId())) { - byInternalId.put(sample.getInternalId(), sample); - } - - Map samples = byInternalPatientAndStableSampleId.get(sample.getInternalPatientId()); - if (samples==null) { - samples = new HashMap(); - byInternalPatientAndStableSampleId.put(sample.getInternalPatientId(), samples); - } - if (samples.containsKey(sample.getStableId())) { - System.err.println("Something is wrong: there are two samples of "+sample.getStableId()+" in the same patient."); - } - samples.put(sample.getStableId(), sample); - - samples = byCancerStudyIdAndStableSampleId.get(cancerStudyId); - if (samples==null) { - samples = new HashMap(); - byCancerStudyIdAndStableSampleId.put(cancerStudyId, samples); - } - if (samples.containsKey(sample.getStableId())) { - System.err.println("Something is wrong: there are two samples of "+sample.getStableId()+" in the same study."); - } - samples.put(sample.getStableId(), sample); - } - - public static int addSample(Sample sample) throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSample.class); - pstmt = con.prepareStatement("INSERT INTO sample " + - "( `STABLE_ID`, `SAMPLE_TYPE`, `PATIENT_ID` ) " + - "VALUES (?,?,?)", - Statement.RETURN_GENERATED_KEYS); - pstmt.setString(1, sample.getStableId()); - pstmt.setString(2, sample.getType().toString()); - pstmt.setInt(3, sample.getInternalPatientId()); - pstmt.executeUpdate(); - rs = pstmt.getGeneratedKeys(); - if (rs.next()) { - cacheSample(new Sample(rs.getInt(1), sample.getStableId(), - sample.getInternalPatientId())); - return rs.getInt(1); - } - return -1; - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoSample.class, con, pstmt, rs); - } - } - - public static List getAllSamples() - { - return (byStableId.isEmpty()) ? Collections.emptyList() : - new ArrayList(byStableId.values()); - } - - public static Sample getSampleById(int internalId) - { - return byInternalId.get(internalId); - } - - public static List getSamplesByPatientId(int internalPatientId) - { - return (byInternalPatientAndStableSampleId.isEmpty() || !byInternalPatientAndStableSampleId.containsKey(internalPatientId)) ? Collections.emptyList() : - new ArrayList(byInternalPatientAndStableSampleId.get(internalPatientId).values()); - } - - public static Sample getSampleByPatientAndSampleId(int internalPatientId, String stableSampleId) - { - Map samples = byInternalPatientAndStableSampleId.get(internalPatientId); - if (samples==null) { - return null; - } - - return samples.get(stableSampleId); - } - - public static List getSamplesByCancerStudy(int cancerStudyId) - { - Map samples = byCancerStudyIdAndStableSampleId.get(cancerStudyId); - if (samples==null) { - return Collections.emptyList(); - } - - return new ArrayList(samples.values()); - } - - /** - * This method returns the list of sample (stable) ids for a study, e.g. TCGA-A1-A0SB-01, etc. - * - * @param cancerStudyId : the cancer study internal id - * @return - */ - public static List getSampleStableIdsByCancerStudy(int cancerStudyId) - { - List samples = getSamplesByCancerStudy(cancerStudyId); - List result = new ArrayList(); - for (Sample sample : samples) { - result.add(sample.getStableId()); - } - return result; - } - - public static Sample getSampleByCancerStudyAndSampleId(int cancerStudyId, String stableSampleId) - { - return getSampleByCancerStudyAndSampleId(cancerStudyId, stableSampleId, true); - - } - - /** - * Same as getSampleByCancerStudyAndSampleId, but with extra option on whether or not - * to log extra warning when sample is not found. - * - * @param cancerStudyId - * @param stableSampleId - * @param errorWhenNotFound : set to true to log warning in ProgressMonitor in case sample is not found. - * Some processes, like ImportClinicalData do not want an error here, but use the null result as a flag - * to decide whether a new sample should be added to the DB. These processes should set this parameter - * to false. - * - * @return Sample object if sample was found in cache, null otherwise. - */ - public static Sample getSampleByCancerStudyAndSampleId(int cancerStudyId, String stableSampleId, boolean errorWhenNotFound) - { - Map samples = byCancerStudyIdAndStableSampleId.get(cancerStudyId); - if (samples==null) { - if (errorWhenNotFound) { - ProgressMonitor.logWarning("Couldn't find sample "+stableSampleId+" in study "+cancerStudyId); - } - return null; - } - - return samples.get(stableSampleId); - } - - public static void deleteAllRecords() throws DaoException - { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSample.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE sample"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoSample.class, con, pstmt, rs); - } - - clearCache(); - } - - private static Sample extractSample(ResultSet rs) throws SQLException - { - return new Sample(rs.getInt("INTERNAL_ID"), - rs.getString("STABLE_ID"), - rs.getInt("PATIENT_ID")); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSampleList.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSampleList.java deleted file mode 100644 index c3200389a30..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSampleList.java +++ /dev/null @@ -1,314 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import java.sql.*; -import java.util.*; - -/** - * Data access object for patient_List table - */ -public class DaoSampleList { - - /** - * Adds record to sample_list table. - */ - public int addSampleList(SampleList sampleList) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - int rows; - try { - con = JdbcUtil.getDbConnection(DaoSampleList.class); - - pstmt = con.prepareStatement("INSERT INTO sample_list (`STABLE_ID`, `CANCER_STUDY_ID`, `NAME`, `CATEGORY`," + - "`DESCRIPTION`)" + " VALUES (?,?,?,?,?)"); - pstmt.setString(1, sampleList.getStableId()); - pstmt.setInt(2, sampleList.getCancerStudyId()); - pstmt.setString(3, sampleList.getName()); - pstmt.setString(4, sampleList.getSampleListCategory().getCategory()); - pstmt.setString(5, sampleList.getDescription()); - rows = pstmt.executeUpdate(); - int listListRow = addSampleListList(sampleList, con); - rows = (listListRow != -1) ? (rows + listListRow) : rows; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleList.class, con, pstmt, rs); - } - - return rows; - } - - /** - * Given a patient list by stable Id, returns a patient list. - */ - public SampleList getSampleListByStableId(String stableId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleList.class); - pstmt = con.prepareStatement - ("SELECT * FROM sample_list WHERE STABLE_ID = ?"); - pstmt.setString(1, stableId); - rs = pstmt.executeQuery(); - if (rs.next()) { - SampleList sampleList = extractSampleList(rs); - sampleList.setSampleList(getSampleListList(sampleList, con)); - return sampleList; - } - return null; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleList.class, con, pstmt, rs); - } - } - - /** - * Given a patient list ID, returns a patient list. - */ - public SampleList getSampleListById(int id) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleList.class); - pstmt = con.prepareStatement - ("SELECT * FROM sample_list WHERE LIST_ID = ?"); - pstmt.setInt(1, id); - rs = pstmt.executeQuery(); - if (rs.next()) { - SampleList sampleList = extractSampleList(rs); - sampleList.setSampleList(getSampleListList(sampleList, con)); - return sampleList; - } - return null; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleList.class, con, pstmt, rs); - } - } - - /** - * Given a cancerStudyId, returns all patient list. - */ - public ArrayList getAllSampleLists( int cancerStudyId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleList.class); - - pstmt = con.prepareStatement - ("SELECT * FROM sample_list WHERE CANCER_STUDY_ID = ? ORDER BY NAME"); - pstmt.setInt(1, cancerStudyId); - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - while (rs.next()) { - SampleList sampleList = extractSampleList(rs); - list.add(sampleList); - } - // get patient list-list - for (SampleList sampleList : list) { - sampleList.setSampleList(getSampleListList(sampleList, con)); - } - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleList.class, con, pstmt, rs); - } - } - - /** - * Returns a list of all patient lists. - */ - public ArrayList getAllSampleLists() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleList.class); - pstmt = con.prepareStatement - ("SELECT * FROM sample_list"); - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - while (rs.next()) { - SampleList sampleList = extractSampleList(rs); - list.add(sampleList); - } - // get patient list-list - for (SampleList sampleList : list) { - sampleList.setSampleList(getSampleListList(sampleList, con)); - } - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleList.class, con, pstmt, rs); - } - } - - /** - * Clears all records from patient list & sample_list_list. - */ - public void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleList.class); - pstmt = con.prepareStatement("TRUNCATE TABLE sample_list"); - pstmt.executeUpdate(); - pstmt = con.prepareStatement("TRUNCATE TABLE sample_list_list"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleList.class, con, pstmt, rs); - } - } - - /** - * Given a patient list, gets list id from sample_list table - */ - private int getSampleListId(SampleList sampleList) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleList.class); - pstmt = con.prepareStatement("SELECT LIST_ID FROM sample_list WHERE STABLE_ID=?"); - pstmt.setString(1, sampleList.getStableId()); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt("LIST_ID"); - } - return -1; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleList.class, con, pstmt, rs); - } - } - - /** - * Adds record to sample_list_list. - */ - private int addSampleListList(SampleList sampleList, Connection con) throws DaoException { - - // get patient list id - int sampleListId = getSampleListId(sampleList); - if (sampleListId == -1) { - return -1; - } - - if (sampleList.getSampleList().isEmpty()) { - return 0; - } - - PreparedStatement pstmt ; - ResultSet rs = null; - int skippedPatients = 0; - try { - StringBuilder sql = new StringBuilder("INSERT INTO sample_list_list (`LIST_ID`, `SAMPLE_ID`) VALUES "); - // NOTE - as of 12/12/14, patient lists contain sample ids - for (String sampleId : sampleList.getSampleList()) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(sampleList.getCancerStudyId(), sampleId); - if (sample == null) { - System.out.println("null sample: " + sampleId + ":" + sampleList.getStableId()); - ++skippedPatients; - continue; - } - sql.append("('").append(sampleListId).append("','").append(sample.getInternalId()).append("'),"); - } - if (skippedPatients == sampleList.getSampleList().size()) { - return 0; - } - sql.deleteCharAt(sql.length()-1); - pstmt = con.prepareStatement(sql.toString()); - return pstmt.executeUpdate(); - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(rs); - } - } - - /** - * Given a patient list object (thus patient list id) gets patient list list. - */ - private ArrayList getSampleListList(SampleList sampleList, Connection con) throws DaoException { - - PreparedStatement pstmt ; - ResultSet rs = null; - try { - pstmt = con.prepareStatement - ("SELECT * FROM sample_list_list WHERE LIST_ID = ?"); - pstmt.setInt(1, sampleList.getSampleListId()); - rs = pstmt.executeQuery(); - ArrayList patientIds = new ArrayList(); - while (rs.next()) { - // NOTE - as of 12/12/14, patient lists contain sample ids - Sample sample = DaoSample.getSampleById(rs.getInt("SAMPLE_ID")); - patientIds.add(sample.getStableId()); - } - return patientIds; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(rs); - } - } - - /** - * Given a result set, creates a patient list object. - */ - private SampleList extractSampleList(ResultSet rs) throws SQLException { - SampleList sampleList = new SampleList(); - sampleList.setStableId(rs.getString("STABLE_ID")); - sampleList.setCancerStudyId(rs.getInt("CANCER_STUDY_ID")); - sampleList.setName(rs.getString("NAME")); - sampleList.setSampleListCategory(SampleListCategory.get(rs.getString("CATEGORY"))); - sampleList.setDescription(rs.getString("DESCRIPTION")); - sampleList.setSampleListId(rs.getInt("LIST_ID")); - return sampleList; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSampleProfile.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSampleProfile.java deleted file mode 100644 index acfb299d314..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoSampleProfile.java +++ /dev/null @@ -1,392 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import org.apache.commons.lang3.StringUtils; - -import java.sql.*; -import java.util.*; - -/** - * Data access object for sample_profile table - */ -public final class DaoSampleProfile { - /** - * Adds a record to the sample_profile table. This is part of adding records from genetic profiles. - * Can use the bulk loader. - */ - private DaoSampleProfile() {} - - private static final int NO_SUCH_PROFILE_ID = -1; - private static final String TABLE_NAME = "sample_profile"; - - public static int addSampleProfile(Integer sampleId, Integer geneticProfileId, Integer panelId) throws DaoException { - if (MySQLbulkLoader.isBulkLoad()) { - - // Add new record using bulk loader. Order of fields is: - // 1. sample ID - // 2. genetic Profile ID - // 3. gene panel ID - if (panelId != null) { - MySQLbulkLoader.getMySQLbulkLoader(TABLE_NAME).insertRecord( - Integer.toString(sampleId), - Integer.toString(geneticProfileId), - Integer.toString(panelId)); - } else { - MySQLbulkLoader.getMySQLbulkLoader(TABLE_NAME).insertRecord( - Integer.toString(sampleId), - Integer.toString(geneticProfileId), - null); - } - - return 1; - } - - // Add new record without using bulk loader - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - if (!sampleExistsInGeneticProfile(sampleId, geneticProfileId)) { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement - ("INSERT INTO sample_profile (`SAMPLE_ID`, `GENETIC_PROFILE_ID`, `PANEL_ID`) " - + "VALUES (?,?,?)"); - pstmt.setInt(1, sampleId); - pstmt.setInt(2, geneticProfileId); - if (panelId != null) { - pstmt.setInt(3, panelId); - } - else { - pstmt.setNull(3, java.sql.Types.INTEGER); - } - return pstmt.executeUpdate(); - } else { - // This should be an error, because the record already exists. - return 0; - } - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static void updateSampleProfile(Integer sampleId, Integer geneticProfileId, Integer panelId) throws DaoException { - /** - * Update a record in the sample_profile table when adding gene panel field from the sample profile matrix. - * Can not use the bulk loader, because the sample might already be added, which requires an UPDATE of the - * record. - */ - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - if (!sampleExistsInGeneticProfile(sampleId, geneticProfileId)) { - - pstmt = con.prepareStatement - ("INSERT INTO sample_profile (`SAMPLE_ID`, `GENETIC_PROFILE_ID`, `PANEL_ID`) VALUES (?,?,?)"); - pstmt.setInt(1, sampleId); - pstmt.setInt(2, geneticProfileId); - if (panelId != null) { - pstmt.setInt(3, panelId); - } else { - pstmt.setNull(3, java.sql.Types.INTEGER); - } - } else { - pstmt = con.prepareStatement - ("UPDATE `sample_profile` SET `PANEL_ID` = ? WHERE (`SAMPLE_ID` = ? AND `GENETIC_PROFILE_ID` = ?)"); - if (panelId != null) { - pstmt.setInt(1, panelId); - } else { - pstmt.setNull(1, java.sql.Types.INTEGER); - } - pstmt.setInt(2, sampleId); - pstmt.setInt(3, geneticProfileId); - } - pstmt.executeUpdate(); - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static boolean sampleExistsInGeneticProfile(int sampleId, int geneticProfileId) - throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement - ("SELECT * FROM sample_profile WHERE SAMPLE_ID = ? AND GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, sampleId); - pstmt.setInt(2, geneticProfileId); - rs = pstmt.executeQuery(); - return (rs.next()); - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static int countSamplesInProfile(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement - ("SELECT count(*) FROM sample_profile WHERE GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static int getProfileIdForSample(int sampleId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement("SELECT GENETIC_PROFILE_ID FROM sample_profile WHERE SAMPLE_ID = ?"); - pstmt.setInt(1, sampleId); - rs = pstmt.executeQuery(); - if( rs.next() ) { - return rs.getInt("GENETIC_PROFILE_ID"); - }else{ - return NO_SUCH_PROFILE_ID; - } - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static ArrayList getAllSampleIdsInProfile(int geneticProfileId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement - ("SELECT * FROM sample_profile WHERE GENETIC_PROFILE_ID = ?"); - pstmt.setInt(1, geneticProfileId); - rs = pstmt.executeQuery(); - ArrayList sampleIds = new ArrayList(); - while (rs.next()) { - Sample sample = DaoSample.getSampleById(rs.getInt("SAMPLE_ID")); - sampleIds.add(rs.getInt("SAMPLE_ID")); - } - return sampleIds; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static ArrayList getAllSamples() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement - ("SELECT * FROM sample_profile"); - rs = pstmt.executeQuery(); - ArrayList sampleIds = new ArrayList(); - while (rs.next()) { - sampleIds.add(rs.getInt("SAMPLE_ID")); - } - return sampleIds; - } catch (NullPointerException e) { - throw new DaoException(e); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - /** - * Counts the number of sequenced cases in each cancer study, returning a list of maps - * containing the cancer study (full string name), the cancer type (e.g. `brca_tcga`), and the count - * - * @return [ list of maps { cancer_study, cancer_type, num_sequenced_samples } ] - * @throws DaoException - * @author Gideon Dresdner - * - */ - public static List> metaData(List cancerStudies) throws DaoException { - // collect all mutationProfileIds - Map id2MutationProfile = new HashMap(); - for (CancerStudy cancerStudy : cancerStudies) { - GeneticProfile mutationProfile = cancerStudy.getMutationProfile(); - - if (mutationProfile != null) { - // e.g. if cancerStudy == All Cancer Studies - Integer mutationProfileId = mutationProfile.getGeneticProfileId(); - id2MutationProfile.put(mutationProfileId, mutationProfile); - } - } - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - - List> data = new ArrayList>(); - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - - String sql = "select `GENETIC_PROFILE_ID`, count(`SAMPLE_ID`) from sample_profile " + - " where `GENETIC_PROFILE_ID` in ("+ StringUtils.join(id2MutationProfile.keySet(), ",") + ")" + - " group by `GENETIC_PROFILE_ID`"; - - pstmt = con.prepareStatement(sql); - rs = pstmt.executeQuery(); - - while (rs.next()) { - Map datum = new HashMap(); - - Integer mutationProfileId = rs.getInt(1); - Integer numSequencedSamples = rs.getInt(2); - - GeneticProfile mutationProfile = id2MutationProfile.get(mutationProfileId); - Integer cancerStudyId = mutationProfile.getCancerStudyId(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - String cancerStudyName = cancerStudy.getName(); - String cancerType = cancerStudy.getTypeOfCancerId(); - - datum.put("cancer_study", cancerStudyName); - datum.put("cancer_type", cancerType); - datum.put("color", DaoTypeOfCancer.getTypeOfCancerById(cancerType).getDedicatedColor()); - datum.put("num_sequenced_samples", numSequencedSamples); - - data.add(datum); - } - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - - return data; - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement("TRUNCATE TABLE sample_profile"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static void deleteRecords(List sampleIds, List profileIds) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - for (int i = 0; i < sampleIds.size(); i++) { - pstmt = con.prepareCall("DELETE FROM sample_profile WHERE sample_id = ? and genetic_profile_id = ?"); - pstmt.setInt(1, sampleIds.get(i)); - pstmt.setInt(2, profileIds.get(i)); - pstmt.executeUpdate(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - - public static boolean sampleProfileMappingExistsByPanel(Integer panelId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoSampleProfile.class); - pstmt = con.prepareStatement("select count(*) from sample_profile where PANEL_ID = ?"); - pstmt.setInt(1, panelId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return (rs.getInt(1) > 0); - } - else { - return false; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoSampleProfile.class, con, pstmt, rs); - } - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoStructuralVariant.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoStructuralVariant.java deleted file mode 100644 index a11026a84f9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoStructuralVariant.java +++ /dev/null @@ -1,256 +0,0 @@ -/* - * Copyright (c) 2017 - 2022 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; -import org.mskcc.cbio.portal.model.StructuralVariant; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.List; - -public class DaoStructuralVariant { - - private DaoStructuralVariant() { - } - /** - * Adds a new Structural variant record to the database. - * @param structuralVariant - * @return number of records successfully added - * @throws DaoException - */ - - public static void addStructuralVariantToBulkLoader(StructuralVariant structuralVariant) throws DaoException { - MySQLbulkLoader bl = MySQLbulkLoader.getMySQLbulkLoader("structural_variant"); - String[] fieldNames = new String[]{ - "INTERNAL_ID", - "GENETIC_PROFILE_ID", - "SAMPLE_ID", - "SITE1_ENTREZ_GENE_ID", - "SITE1_ENSEMBL_TRANSCRIPT_ID", - "SITE1_CHROMOSOME", - "SITE1_POSITION", - "SITE1_CONTIG", - "SITE1_REGION", - "SITE1_REGION_NUMBER", - "SITE1_DESCRIPTION", - "SITE2_ENTREZ_GENE_ID", - "SITE2_ENSEMBL_TRANSCRIPT_ID", - "SITE2_CHROMOSOME", - "SITE2_POSITION", - "SITE2_CONTIG", - "SITE2_REGION", - "SITE2_REGION_NUMBER", - "SITE2_DESCRIPTION", - "SITE2_EFFECT_ON_FRAME", - "NCBI_BUILD", - "DNA_SUPPORT", - "RNA_SUPPORT", - "NORMAL_READ_COUNT", - "TUMOR_READ_COUNT", - "NORMAL_VARIANT_COUNT", - "TUMOR_VARIANT_COUNT", - "NORMAL_PAIRED_END_READ_COUNT", - "TUMOR_PAIRED_END_READ_COUNT", - "NORMAL_SPLIT_READ_COUNT", - "TUMOR_SPLIT_READ_COUNT", - "ANNOTATION", - "BREAKPOINT_TYPE", - "CONNECTION_TYPE", - "EVENT_INFO", - "CLASS", - "LENGTH", - "COMMENTS", - "SV_STATUS", - "ANNOTATION_JSON" - }; - bl.setFieldNames(fieldNames); - - // write to the temp file maintained by the MySQLbulkLoader - bl.insertRecord( - Long.toString(structuralVariant.getInternalId()), - Integer.toString(structuralVariant.getGeneticProfileId()), - Integer.toString(structuralVariant.getSampleIdInternal()), - structuralVariant.getSite1EntrezGeneId() == null ? null : Long.toString(structuralVariant.getSite1EntrezGeneId()), - structuralVariant.getSite1EnsemblTranscriptId(), - structuralVariant.getSite1Chromosome(), - Integer.toString(structuralVariant.getSite1Position()), - structuralVariant.getSite1Contig(), - structuralVariant.getSite1Region(), - Integer.toString(structuralVariant.getSite1RegionNumber()), - structuralVariant.getSite1Description(), - structuralVariant.getSite2EntrezGeneId() == null ? null : Long.toString(structuralVariant.getSite2EntrezGeneId()), - structuralVariant.getSite2EnsemblTranscriptId(), - structuralVariant.getSite2Chromosome(), - Integer.toString(structuralVariant.getSite2Position()), - structuralVariant.getSite2Contig(), - structuralVariant.getSite2Region(), - Integer.toString(structuralVariant.getSite2RegionNumber()), - structuralVariant.getSite2Description(), - structuralVariant.getSite2EffectOnFrame(), - structuralVariant.getNcbiBuild(), - structuralVariant.getDnaSupport(), - structuralVariant.getRnaSupport(), - Integer.toString(structuralVariant.getNormalReadCount()), - Integer.toString(structuralVariant.getTumorReadCount()), - Integer.toString(structuralVariant.getNormalVariantCount()), - Integer.toString(structuralVariant.getTumorVariantCount()), - Integer.toString(structuralVariant.getNormalPairedEndReadCount()), - Integer.toString(structuralVariant.getTumorPairedEndReadCount()), - Integer.toString(structuralVariant.getNormalSplitReadCount()), - Integer.toString(structuralVariant.getTumorSplitReadCount()), - structuralVariant.getAnnotation(), - structuralVariant.getBreakpointType(), - structuralVariant.getConnectionType(), - structuralVariant.getEventInfo(), - structuralVariant.getVariantClass(), - Integer.toString(structuralVariant.getLength()), - structuralVariant.getComments(), - structuralVariant.getSvStatus(), - structuralVariant.getAnnotationJson() - ); - - if ((structuralVariant.getDriverFilter() != null - && !structuralVariant.getDriverFilter().isEmpty() - && !structuralVariant.getDriverFilter().toLowerCase().equals("na")) - || - (structuralVariant.getDriverTiersFilter() != null - && !structuralVariant.getDriverTiersFilter().isEmpty() - && !structuralVariant.getDriverTiersFilter().toLowerCase().equals("na"))) { - MySQLbulkLoader.getMySQLbulkLoader("alteration_driver_annotation").insertRecord( - Long.toString(structuralVariant.getInternalId()), - Integer.toString(structuralVariant.getGeneticProfileId()), - Integer.toString(structuralVariant.getSampleIdInternal()), - structuralVariant.getDriverFilter(), - structuralVariant.getDriverFilterAnn(), - structuralVariant.getDriverTiersFilter(), - structuralVariant.getDriverTiersFilterAnn() - ); - } - } - - public static long getLargestInternalId() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoMutation.class); - pstmt = con.prepareStatement("SELECT MAX(`INTERNAL_ID`) FROM `structural_variant`"); - rs = pstmt.executeQuery(); - return rs.next() ? rs.getLong(1) : 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoMutation.class, con, pstmt, rs); - } - } - - /** - * Return all structural variants in the database. - * @return - * @throws DaoException - */ - public static List getAllStructuralVariants() throws DaoException { - ArrayList result = new ArrayList<>(); - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneset.class); - pstmt = con.prepareStatement( - "SELECT * FROM structural_variant" + - " LEFT JOIN alteration_driver_annotation ON" + - " structural_variant.GENETIC_PROFILE_ID = alteration_driver_annotation.GENETIC_PROFILE_ID" + - " and structural_variant.SAMPLE_ID = alteration_driver_annotation.SAMPLE_ID" + - " and structural_variant.INTERNAL_ID = alteration_driver_annotation.ALTERATION_EVENT_ID"); - rs = pstmt.executeQuery(); - - while (rs.next()) { - result.add(extractStructuralVariant(rs)); - } - return result; - } - catch (SQLException e) { - throw new DaoException(e); - } - finally { - JdbcUtil.closeAll(DaoGeneset.class, con, pstmt, rs); - } - } - - /** - * Extracts StructuralVariant record from ResultSet. - * @param rs - * @return StructuralVariant record - */ - private static StructuralVariant extractStructuralVariant(ResultSet rs) throws SQLException { - StructuralVariant structuralVariant = new StructuralVariant(); - structuralVariant.setGeneticProfileId(rs.getInt("GENETIC_PROFILE_ID")); - structuralVariant.setSampleIdInternal(rs.getInt("SAMPLE_ID")); - structuralVariant.setSite1EntrezGeneId(rs.getLong("SITE1_ENTREZ_GENE_ID")); - structuralVariant.setSite1EnsemblTranscriptId(rs.getString("SITE1_ENSEMBL_TRANSCRIPT_ID")); - structuralVariant.setSite1Chromosome(rs.getString("SITE1_CHROMOSOME")); - structuralVariant.setSite1Position(rs.getInt("SITE1_POSITION")); - structuralVariant.setSite1Contig(rs.getString("SITE1_CONTIG")); - structuralVariant.setSite1Region(rs.getString("SITE1_REGION")); - structuralVariant.setSite1RegionNumber(rs.getInt("SITE1_REGION_NUMBER")); - structuralVariant.setSite1Description(rs.getString("SITE1_DESCRIPTION")); - structuralVariant.setSite2EntrezGeneId(rs.getLong("SITE2_ENTREZ_GENE_ID")); - structuralVariant.setSite2EnsemblTranscriptId(rs.getString("SITE2_ENSEMBL_TRANSCRIPT_ID")); - structuralVariant.setSite2Chromosome(rs.getString("SITE2_CHROMOSOME")); - structuralVariant.setSite2Position(rs.getInt("SITE2_POSITION")); - structuralVariant.setSite2Contig(rs.getString("SITE2_CONTIG")); - structuralVariant.setSite2Region(rs.getString("SITE2_REGION")); - structuralVariant.setSite2RegionNumber(rs.getInt("SITE2_REGION_NUMBER")); - structuralVariant.setSite2Description(rs.getString("SITE2_DESCRIPTION")); - structuralVariant.setSite2EffectOnFrame(rs.getString("SITE2_EFFECT_ON_FRAME")); - structuralVariant.setNcbiBuild(rs.getString("NCBI_BUILD")); - structuralVariant.setDnaSupport(rs.getString("DNA_SUPPORT")); - structuralVariant.setRnaSupport(rs.getString("RNA_SUPPORT")); - structuralVariant.setNormalReadCount(rs.getInt("NORMAL_READ_COUNT")); - structuralVariant.setTumorReadCount(rs.getInt("TUMOR_READ_COUNT")); - structuralVariant.setNormalVariantCount(rs.getInt("NORMAL_VARIANT_COUNT")); - structuralVariant.setTumorVariantCount(rs.getInt("TUMOR_VARIANT_COUNT")); - structuralVariant.setNormalPairedEndReadCount(rs.getInt("NORMAL_PAIRED_END_READ_COUNT")); - structuralVariant.setTumorPairedEndReadCount(rs.getInt("TUMOR_PAIRED_END_READ_COUNT")); - structuralVariant.setNormalSplitReadCount(rs.getInt("NORMAL_SPLIT_READ_COUNT")); - structuralVariant.setTumorSplitReadCount(rs.getInt("TUMOR_SPLIT_READ_COUNT")); - structuralVariant.setAnnotation(rs.getString("ANNOTATION")); - structuralVariant.setBreakpointType(rs.getString("BREAKPOINT_TYPE")); - structuralVariant.setConnectionType(rs.getString("CONNECTION_TYPE")); - structuralVariant.setEventInfo(rs.getString("EVENT_INFO")); - structuralVariant.setVariantClass(rs.getString("CLASS")); - structuralVariant.setLength(rs.getInt("LENGTH")); - structuralVariant.setComments(rs.getString("COMMENTS")); - structuralVariant.setDriverFilter(rs.getString("DRIVER_FILTER")); - structuralVariant.setDriverFilterAnn(rs.getString("DRIVER_FILTER_ANNOTATION")); - structuralVariant.setDriverTiersFilter(rs.getString("DRIVER_TIERS_FILTER")); - structuralVariant.setDriverTiersFilterAnn(rs.getString("DRIVER_TIERS_FILTER_ANNOTATION")); - structuralVariant.setSvStatus(rs.getString("SV_STATUS")); - structuralVariant.setAnnotationJson(rs.getString("ANNOTATION_JSON")); - return structuralVariant; - } -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoTypeOfCancer.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoTypeOfCancer.java deleted file mode 100644 index 45aea875c96..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoTypeOfCancer.java +++ /dev/null @@ -1,196 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; - -import org.mskcc.cbio.portal.model.TypeOfCancer; - -/** - * A TypeOfCancer is a clinical cancer type, such as Glioblastoma, Ovarian, etc. - * Eventually, we'll have ontology problems with this, but initially the dbms - * will be loaded from a file with a static table of types. - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class DaoTypeOfCancer { - - // these methods should be static, as this object has no state - public static int addTypeOfCancer(TypeOfCancer typeOfCancer) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoTypeOfCancer.class); - pstmt = con.prepareStatement("INSERT INTO type_of_cancer ( `TYPE_OF_CANCER_ID`, `NAME`, `DEDICATED_COLOR`, `SHORT_NAME`, `PARENT` ) VALUES (?,?,?,?,?)"); - pstmt.setString(1, typeOfCancer.getTypeOfCancerId()); - pstmt.setString(2, typeOfCancer.getName()); - pstmt.setString(3, typeOfCancer.getDedicatedColor()); - pstmt.setString(4, typeOfCancer.getShortName()); - pstmt.setString(5, typeOfCancer.getParentTypeOfCancerId()); - return pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoTypeOfCancer.class, con, pstmt, rs); - } - } - - public static TypeOfCancer getTypeOfCancerById(String typeOfCancerId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoTypeOfCancer.class); - pstmt = con.prepareStatement("SELECT * FROM type_of_cancer WHERE TYPE_OF_CANCER_ID=?"); - pstmt.setString(1, typeOfCancerId); - rs = pstmt.executeQuery(); - if (rs.next()) { - return extractTypeOfCancer(rs); - } - return null; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoTypeOfCancer.class, con, pstmt, rs); - } - } - - public static ArrayList getAllTypesOfCancer() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoTypeOfCancer.class); - pstmt = con.prepareStatement("SELECT * FROM type_of_cancer"); - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - while (rs.next()) { - TypeOfCancer typeOfCancer = extractTypeOfCancer(rs); - list.add(typeOfCancer); - } - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoTypeOfCancer.class, con, pstmt, rs); - } - } - - public static int getCount() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoTypeOfCancer.class); - pstmt = con.prepareStatement("SELECT COUNT(*) FROM type_of_cancer"); - rs = pstmt.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoTypeOfCancer.class, con, pstmt, rs); - } - } - - /** - * Deletes all records from DB using TRUNCATE statement! - * - * @throws DaoException - * - * @deprecated do not use this! Use deleteAllTypesOfCancer instead - */ - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoTypeOfCancer.class); - JdbcUtil.disableForeignKeyCheck(con); - pstmt = con.prepareStatement("TRUNCATE TABLE type_of_cancer"); - pstmt.executeUpdate(); - JdbcUtil.enableForeignKeyCheck(con); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoTypeOfCancer.class, con, pstmt, rs); - } - } - - /** - * Deletes all records from DB using DELETE statement. - * - * @param typeOfCancerId - * @throws DaoException - */ - public static void deleteAllTypesOfCancer() throws DaoException { - for (TypeOfCancer typeOfCancer : getAllTypesOfCancer()) { - deleteTypeOfCancer(typeOfCancer.getTypeOfCancerId()); - } - } - - public static void deleteTypeOfCancer(String typeOfCancerId) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoTypeOfCancer.class); - pstmt = con.prepareStatement("DELETE from " + "type_of_cancer WHERE TYPE_OF_CANCER_ID=?"); - pstmt.setString(1, typeOfCancerId); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoTypeOfCancer.class, con, pstmt, rs); - } - } - - private static TypeOfCancer extractTypeOfCancer(ResultSet rs) throws SQLException { - TypeOfCancer typeOfCancer = new TypeOfCancer(); - - typeOfCancer.setTypeOfCancerId(rs.getString("TYPE_OF_CANCER_ID")); - typeOfCancer.setName(rs.getString("NAME")); - typeOfCancer.setDedicatedColor(rs.getString("DEDICATED_COLOR")); - typeOfCancer.setShortName(rs.getString("SHORT_NAME")); - typeOfCancer.setParentTypeOfCancerId(rs.getString("PARENT")); - - return typeOfCancer; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoUser.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoUser.java deleted file mode 100644 index 4d03ead7bad..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoUser.java +++ /dev/null @@ -1,157 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; - -import org.mskcc.cbio.portal.model.User; - -/** - * A User. They must have an EMAIL & ENABLED. - * NAME is optional (i.e., could be ""). - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * @author Benjamin Gross - */ -public class DaoUser { - - public static int addUser(User user) throws DaoException { - - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUser.class); - pstmt = con.prepareStatement("INSERT INTO users ( `EMAIL`, `NAME`, `ENABLED` ) VALUES (?,?,?)"); - pstmt.setString(1, user.getEmail()); - pstmt.setString(2, user.getName()); - pstmt.setBoolean(3, user.isEnabled()); - return pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUser.class, con, pstmt, rs); - } - } - - /** - * If a user with the email exists in the dbms, return their User object. - * Otherwise, return null. - * - * @param email - * @return - * @throws DaoException - */ - public static User getUserByEmail(String email) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUser.class); - pstmt = con.prepareStatement("SELECT * FROM users WHERE EMAIL=?"); - pstmt.setString(1, email); - rs = pstmt.executeQuery(); - if (rs.next()) { - return extractUser(rs); - } - return null; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUser.class, con, pstmt, rs); - } - } - - public static ArrayList getAllUsers() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUser.class); - pstmt = con.prepareStatement("SELECT * FROM users"); - rs = pstmt.executeQuery(); - ArrayList list = new ArrayList(); - while (rs.next()) { - User user = extractUser(rs); - list.add(user); - } - return list; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUser.class, con, pstmt, rs); - } - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUser.class); - pstmt = con.prepareStatement("TRUNCATE TABLE users"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUser.class, con, pstmt, rs); - } - } - - public static void deleteUser(String email) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUser.class); - pstmt = con.prepareStatement("DELETE FROM users WHERE EMAIL=?"); - pstmt.setString(1, email); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUser.class, con, pstmt, rs); - } - } - - private static User extractUser(ResultSet rs) throws SQLException { - - return new User(rs.getString("EMAIL"), - rs.getString("NAME"), - rs.getBoolean("ENABLED")); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoUserAuthorities.java b/core/src/main/java/org/mskcc/cbio/portal/dao/DaoUserAuthorities.java deleted file mode 100644 index 6b7df403169..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/DaoUserAuthorities.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -// imports -import org.mskcc.cbio.portal.model.User; -import org.mskcc.cbio.portal.model.UserAuthorities; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; - -/** - * DAO into authorities table. - * - * @author Benjamin Gross - */ -public class DaoUserAuthorities { - - public static int addUserAuthorities(UserAuthorities userAuthorities) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - int toReturn = 0; - try { - con = JdbcUtil.getDbConnection(DaoUserAuthorities.class); - String email = userAuthorities.getEmail(); - for (String authority : userAuthorities.getAuthorities()) { - pstmt = con.prepareStatement("INSERT INTO authorities (`EMAIL`, `AUTHORITY`) VALUES (?,?)"); - pstmt.setString(1, email); - pstmt.setString(2, authority); - toReturn += pstmt.executeUpdate(); - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUserAuthorities.class, con, pstmt, rs); - } - - // outta here - return toReturn; - } - - public static UserAuthorities getUserAuthorities(User user) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUserAuthorities.class); - pstmt = con.prepareStatement("SELECT * FROM authorities where EMAIL=?"); - pstmt.setString(1, user.getEmail()); - rs = pstmt.executeQuery(); - ArrayList authorities = new ArrayList(); - while (rs.next()) { - authorities.add(rs.getString("AUTHORITY")); - } - return new UserAuthorities(user.getEmail(), authorities); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUserAuthorities.class, con, pstmt, rs); - } - } - - public static void removeUserAuthorities(User user) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUserAuthorities.class); - pstmt = con.prepareStatement("DELETE FROM authorities where EMAIL=?"); - pstmt.setString(1, user.getEmail()); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUserAuthorities.class, con, pstmt, rs); - } - } - - public static void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoUserAuthorities.class); - pstmt = con.prepareStatement("TRUNCATE TABLE authorities"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoUserAuthorities.class, con, pstmt, rs); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/GeneticAlterationUtil.java b/core/src/main/java/org/mskcc/cbio/portal/dao/GeneticAlterationUtil.java deleted file mode 100644 index c9327d786fd..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/GeneticAlterationUtil.java +++ /dev/null @@ -1,173 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import org.springframework.stereotype.Component; -import org.springframework.beans.factory.annotation.Autowired; -import org.apache.commons.math3.stat.correlation.PearsonsCorrelation; -import java.util.*; - -/** - * Utility Class for Retrieving Genetic Alteration Data. - * - * This class is a wrapper for multiple DAO Classes, and enables you to retrieve different types - * of genomic data, and based on different types of genes, e.g. canonical (protein-coding) genes - * and microRNAs. - * - * @author Ethan Cerami. - */ -@Component -public class GeneticAlterationUtil { - private static final String NAN = "NaN"; - - /** - * Gets a Row of data corresponding to: target gene, within the target genetic profile - * and only within the target samples. - * - * @param targetGene Target Gene. - * @param targetSampleList Target Sample List. - * @param targetGeneticProfile Target Genetic Profile. - * @return Array List of String values. - * @throws DaoException Database Error. - */ - public static ArrayList getGeneticAlterationDataRow(Gene targetGene, - List targetSampleList, - GeneticProfile targetGeneticProfile) throws DaoException { - ArrayList dataRow = new ArrayList(); - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - // First branch: are we dealing with a canonical (protein-coding) gene or a microRNA? - if (targetGene instanceof CanonicalGene) { - CanonicalGene canonicalGene = (CanonicalGene) targetGene; - Map sampleMap; - - // Handle Mutations one way - if (targetGeneticProfile.getGeneticAlterationType() == GeneticAlterationType.MUTATION_EXTENDED) { - sampleMap = getMutationMap(targetSampleList, - targetGeneticProfile.getGeneticProfileId(), - canonicalGene.getEntrezGeneId()); - } - else { - - // Handle All Other Data Types another way - sampleMap = daoGeneticAlteration.getGeneticAlterationMap(targetGeneticProfile.getGeneticProfileId(), - canonicalGene.getEntrezGeneId()); - } - - // Iterate through all samples in the profile - for (Integer sampleId : targetSampleList) { - String value = sampleMap.get(sampleId); - if (value == null) { - dataRow.add (NAN); - } else { - dataRow.add (value); - } - } - } - return dataRow; - } - - /** - * Gets a Map of Mutation Data. - */ - private static HashMap getMutationMap (List targetSampleList, - int geneticProfileId, long entrezGeneId) throws DaoException { - HashMap mutationMap = new HashMap (); - List mutationList = DaoMutation.getMutations(geneticProfileId, targetSampleList, entrezGeneId); - for (ExtendedMutation mutation : mutationList) { - Integer sampleId = mutation.getSampleId(); - // Handle the possibility of multiple mutations in the same gene / sample - // Handles issue: 165 - if (mutationMap.containsKey(sampleId)) { - String existingStr = mutationMap.get(sampleId); - mutationMap.put(sampleId, existingStr + "," + - mutation.getProteinChange()); - } else { - mutationMap.put(sampleId, mutation.getProteinChange()); - } - } - return mutationMap; - } - - - private static Map getBestCorrelatedSampleMap(Map[] sampleMaps, - List targetSampleList, - List correlatedToData) { - if (sampleMaps.length==1 || correlatedToData==null || correlatedToData.size()!= targetSampleList.size()) { - return sampleMaps[0]; - } - Map ret = null; - double maxCorr = Double.NEGATIVE_INFINITY; - for (Map map : sampleMaps) { - double corr = calcCorrCoef(map, targetSampleList, correlatedToData); - if (corr > maxCorr) { - maxCorr = corr; - ret = map; - } - } - return ret; - } - - private static double calcCorrCoef(Map sampleMap, - List targetSampleList, - List correlatedToData) { - try { - List l1 = new ArrayList(); - List l2 = new ArrayList(); - for (int i=0; i. -*/ - -package org.mskcc.cbio.portal.dao; - -import java.sql.*; -import java.util.*; -import javax.sql.DataSource; -import org.apache.commons.dbcp2.BasicDataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.util.*; - -/** - * Connection Utility for JDBC. - * - * @author Ethan Cerami - * @author Ersin Ciftci - */ -public class JdbcUtil { - private static DataSource dataSource; - private static Map activeConnectionCount = new HashMap(); // keep track of the number of active connection per class/requester - private static final Logger LOG = LoggerFactory.getLogger(JdbcUtil.class); - - /** - * Gets the data source - * @return the data source - */ - public static DataSource getDataSource() { - if (dataSource == null) { - dataSource = new JdbcDataSource(); - } - return dataSource; - } - - /** - * Sets the data source - * @param value the data source - */ - public static void setDataSource(DataSource value) { - dataSource = value; - } - - /** - * Gets Connection to the Database. - * - * @param clazz class - * @return Live Connection to Database. - * @throws java.sql.SQLException Error Connecting to Database. - */ - public static Connection getDbConnection(Class clazz) throws SQLException { - return getDbConnection(clazz.getName()); - } - - /** - * Gets Connection to the Database. - * - * @param requester name - * @return Live Connection to Database. - * @throws java.sql.SQLException Error Connecting to Database. - */ - private static Connection getDbConnection(String requester) throws SQLException { - // this method should be syncronized - // but may slow the speed? - Connection con; - try { - con = getDataSource().getConnection(); - } catch (Exception e) { - logMessage(e.getMessage()); - throw new SQLException(e); - } - if (requester != null) { - Integer count = activeConnectionCount.get(requester); - activeConnectionCount.put(requester, count == null ? 1 : (count + 1)); - } - return con; - } - - /** - * Frees Database Connection. - * - * @param con Connection Object. - */ - public static void closeConnection(Class clazz, Connection con) { - closeConnection(clazz.getName(), con); - } - - private static void closeConnection(String requester, Connection con) { - try { - if (con != null && !con.isClosed()) { - con.close(); - if (requester!=null) { - int count = activeConnectionCount.get(requester) - 1; - if (count < 0) { - // since adding connection is not synchronized, the count may not be the real one - count = 0; - } - activeConnectionCount.put(requester, count); - } - } - } catch (Exception e) { - logMessage("Problem Closed a MySQL connection from " + requester + ": " + activeConnectionCount.toString()); - e.printStackTrace(); - } - } - - /** - * Frees PreparedStatement and ResultSet. - * - * @param rs ResultSet Object. - */ - public static void closeAll(ResultSet rs) { - JdbcUtil.closeAll((String)null, null, null, rs); - } - - /** - * Frees Database Connection. - * - * @param con Connection Object. - * @param ps Prepared Statement Object. - * @param rs ResultSet Object. - */ - public static void closeAll(Class clazz, Connection con, PreparedStatement ps, ResultSet rs) { - closeAll(clazz.getName(), con, ps, rs); - } - - /** - * Frees Database Connection. - * - * @param con Connection Object. - * @param rs ResultSet Object. - */ - private static void closeAll(String requester, Connection con, PreparedStatement ps, ResultSet rs) { - if (rs != null) { - try { - if (!rs.isClosed()) { - rs.close(); - } - } catch (SQLException e) { - e.printStackTrace(); - } - } - if (ps != null) { - try { - if (!ps.isClosed()) { - ps.close(); - } - } catch (SQLException e) { - e.printStackTrace(); - } - } - closeConnection(requester, con); - } - - /** - * Why does closeAll need a PreparedStatement? - * This is a copy of closeAll without the PreparedStatement - * @param clazz - * @param con - * @param rs - */ - public static void closeAll(Class clazz, Connection con, ResultSet rs) { - String requester = clazz.getName(); - closeConnection(requester, con); - if (rs != null) { - try { - if (!rs.isClosed()) { - rs.close(); - } - } catch (SQLException e) { - e.printStackTrace(); - } - } - } - - private static void logMessage(String message) { - if (LOG.isInfoEnabled()) { - LOG.info(message); - } - System.err.println(message); - } - - // is it good to put the two methods below here? - static Integer readIntegerFromResultSet(ResultSet rs, String column) throws SQLException { - int i = rs.getInt(column); - return rs.wasNull() ? null : i; - } - - static Long readLongFromResultSet(ResultSet rs, String column) throws SQLException { - long l = rs.getInt(column); - return rs.wasNull() ? null : l; - } - - static Double readDoubleFromResultSet(ResultSet rs, String column) throws SQLException { - double d = rs.getDouble(column); - return rs.wasNull() ? null : d; - } - - /** - * Tells the database to ignore foreign key constraints, effective only for current session. - * Useful when you want to truncate a table that has foreign key constraints. Note that this - * may create orphan records in child tables. - * @param con Database connection - * @throws SQLException - */ - public static void disableForeignKeyCheck(Connection con) throws SQLException { - Statement stmt = con.createStatement(); - stmt.execute("SET FOREIGN_KEY_CHECKS=0"); - stmt.close(); - } - - /** - * Reverses the effect of disableForeignKeyCheck method. - * @param con Database Connection - * @throws SQLException - */ - public static void enableForeignKeyCheck(Connection con) throws SQLException { - Statement stmt = con.createStatement(); - stmt.execute("SET FOREIGN_KEY_CHECKS=1"); - stmt.close(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/dao/MySQLbulkLoader.java b/core/src/main/java/org/mskcc/cbio/portal/dao/MySQLbulkLoader.java deleted file mode 100644 index c9b23e64d1f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/dao/MySQLbulkLoader.java +++ /dev/null @@ -1,305 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.util.*; -import org.apache.commons.io.FileUtils; - -import java.io.*; -import java.sql.*; -import java.util.*; -import java.util.stream.Collectors; - -/** - * To speed up CGDS data loading, bulk load from files using MySQL "LOAD DATA INFILE" functionality. - * Intercept each record write in the normal load, buffer it in a temp file, and load the temp file when done. - * NOT thread-safe. - * @author arthur goldberg - * In the future, would be cooler to implement this by overloading the JDBC Connection.prepareStatement - * and PreparedStatement.setX() calls. - */ -public class MySQLbulkLoader { - private static boolean bulkLoad = false; - private static boolean relaxedMode = false; - private String[] fieldNames = null; - - private static final Map mySQLbulkLoaders = new LinkedHashMap(); - /** - * Get a MySQLbulkLoader - * @param dbName database name - * @return - */ - public static MySQLbulkLoader getMySQLbulkLoader(String dbName) { - MySQLbulkLoader mySQLbulkLoader = mySQLbulkLoaders.get(dbName); - if (mySQLbulkLoader==null) { - mySQLbulkLoader = new MySQLbulkLoader(dbName); - mySQLbulkLoaders.put(dbName, mySQLbulkLoader); - } - return mySQLbulkLoader; - } - - /** - * Flushes all pending data from the bulk writer. Temporarily disables referential - * integrity while it does so, largely because MySQL uses a weird model and expects - * referential integrity at each record, not just at the end of the transaction. - * @return the number of rows added - * @throws DaoException - */ - public static int flushAll() throws DaoException { - int checks = 0; - PreparedStatement stmt = null; - boolean executedSetFKChecks = false; - Connection con = null; - try { - con = JdbcUtil.getDbConnection(MySQLbulkLoader.class); - stmt = con.prepareStatement("SELECT @@foreign_key_checks;"); - ResultSet result = stmt.executeQuery(); - - result.first(); - checks = result.getInt(1); - - stmt = con.prepareStatement("SET foreign_key_checks = ?;"); - stmt.setLong(1, 0); - stmt.execute(); - executedSetFKChecks = true; - - int n = 0; - for (MySQLbulkLoader mySQLbulkLoader : mySQLbulkLoaders.values()) { - n += mySQLbulkLoader.loadDataFromTempFileIntoDBMS(); - } - - return n; - } catch (IOException e) { - System.err.println("Could not open temp file"); - e.printStackTrace(); - return -1; - } catch (SQLException e) { - throw new DaoException(e); - } - finally { - mySQLbulkLoaders.clear(); - if (executedSetFKChecks && stmt != null) { - try { - stmt.setLong(1, checks); - stmt.execute(); - } - catch (SQLException e) { - throw new DaoException(e); - } - } - JdbcUtil.closeAll(MySQLbulkLoader.class, con, stmt, null); - } - } - - private String tempFileName = null; - private File tempFileHandle = null; - private BufferedWriter tempFileWriter = null; - private String tableName; - private final String tempTableSuffix = ".tempTable"; - private int rows; - // TODO: make configurable - private static final long numDebuggingRowsToPrint = 0; - - private MySQLbulkLoader( String tableName ){ - try { - openTempFile( tableName ); - this.tableName = tableName; - } catch (Exception e) { - e.printStackTrace(); - } - } - - /** - * Open temp file for table 'tableName'. - * note that auto_increment fields must be handled specially. - * @param tableName - * @throws FileNotFoundException - * @throws IOException - * @throws IllegalArgumentException - */ - private void openTempFile(String tableName) throws IOException { - - tempFileHandle = File.createTempFile( tableName, tempTableSuffix, FileUtils.getTempDirectory() ); - - tempFileName = tempFileHandle.getAbsolutePath(); - - if (!tempFileHandle.exists()) { - throw new FileNotFoundException("File does not exist: " + tempFileHandle); - } - if (!tempFileHandle.isFile()) { - throw new IllegalArgumentException("Should not be a directory: " + tempFileHandle); - } - if (!tempFileHandle.canWrite()) { - throw new IllegalArgumentException("File cannot be written: " + tempFileHandle); - } - - // to improve performance use buffering; FileWriter always assumes default encoding is OK! - this.tempFileWriter = new BufferedWriter(new FileWriter(tempFileHandle, false)); - } - - /** - * write a record's fields, in order, to the table's temp file. if no fields are provided, writes no record. - * fields are TAB separated. - * @param fieldValues - */ - public void insertRecord( String... fieldValues) { - if( fieldValues.length == 0 ){ - return; - } - try { - tempFileWriter.write( escapeValue(fieldValues[0]) ); - for( int i=1; i records inserted into `"+tableName + "` table: " + updateCount); - int nLines = FileUtil.getNumLines(tempFileHandle); - if (nLines!=updateCount && !relaxedMode) { - String otherDetails = ""; - if (stmt.getWarnings() != null) { - otherDetails = "More error/warning details: " + stmt.getWarnings().getMessage(); - } - throw new DaoException("DB Error: only "+updateCount+" of the "+nLines+" records were inserted in `" + tableName + "`. " + otherDetails + - " See tmp file for more details: " + tempFileName); - - } else { - tempFileHandle.delete(); - } - - // reopen empty temp file -- not necessary, this loader will be removed. - //this.tempFileWriter = new BufferedWriter(new FileWriter( this.tempFileHandle, false)); - - return updateCount; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(MySQLbulkLoader.class, con, pstmt, rs); - } - } - - public String getTempFileName() { - return tempFileName; - } - - public String getTableName() { - return tableName; - } - - public static boolean isBulkLoad() { - return bulkLoad; - } - - public static void bulkLoadOn() { - MySQLbulkLoader.bulkLoad = true; - } - - public static void bulkLoadOff() { - MySQLbulkLoader.bulkLoad = false; - } - - public static void relaxedModeOn() { - MySQLbulkLoader.relaxedMode = true; - } - - public static void relaxedModeOff() { - MySQLbulkLoader.relaxedMode = false; - } - - public void setFieldNames(String[] fieldNames) { - this.fieldNames = fieldNames; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/graph/InteractionToJung.java b/core/src/main/java/org/mskcc/cbio/portal/graph/InteractionToJung.java deleted file mode 100644 index e3b58fc87d6..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/graph/InteractionToJung.java +++ /dev/null @@ -1,115 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.graph; - -import edu.uci.ics.jung.graph.Graph; -import edu.uci.ics.jung.graph.UndirectedSparseMultigraph; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Interaction; - -import java.util.ArrayList; -import java.util.Set; -import java.util.HashSet; - -/** - * Utility Class for converting Interaction Objects to JUNG 2.0 Graphs. - * - * @author Ethan Cerami. - */ -public final class InteractionToJung { - private static final String DELIM = ":"; - - /** - * Private constructor to prevent instantiation. - */ - private InteractionToJung() { - } - - /** - * Creates a JUNG Graph from the Specified List of Interactions. - * - * @param interactionList ArrayList of Interaction Objects. - * @return JUNG Graph. - * @throws DaoException Database Error. - */ - public static Graph createGraph(ArrayList interactionList) - throws DaoException { - Graph graph = new UndirectedSparseMultigraph(); - - // Add Interactions - addInteractionsToGraph(interactionList, graph); - - // All done. Return the graph. - return graph; - } - - private static void addInteractionsToGraph(ArrayList interactionList, - Graph g) throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - Set edgeSet = new HashSet(); - for (Interaction interaction : interactionList) { - long geneAId = interaction.getGeneA(); - long geneBId = interaction.getGeneB(); - CanonicalGene geneA = daoGene.getGene(geneAId); - CanonicalGene geneB = daoGene.getGene(geneBId); - - if (geneA == null) { - throw new NullPointerException ("Cannot identify gene for: " + geneAId); - } - if (geneB == null) { - throw new NullPointerException ("Cannot identify gene for: " + geneBId); - } - g.addVertex(geneA.getHugoGeneSymbolAllCaps()); - g.addVertex(geneB.getHugoGeneSymbolAllCaps()); - String edgeParams = interaction.getInteractionType() + DELIM + interaction.getSource() - + DELIM + interaction.getExperimentTypes() + DELIM + interaction.getPmids(); - String completeEdgeKey = createKey(edgeParams, geneA, geneB); - if (!edgeSet.contains(completeEdgeKey)) { - g.addEdge(completeEdgeKey, geneA.getHugoGeneSymbolAllCaps(), geneB.getHugoGeneSymbolAllCaps()); - edgeSet.add(completeEdgeKey); - } - } - } - - private static String createKey (String edgeKey, CanonicalGene geneA, CanonicalGene geneB){ - long idA = geneA.getEntrezGeneId(); - long idB = geneB.getEntrezGeneId(); - if (idA < idB) { - return edgeKey + DELIM + idA + DELIM + idB; - } else { - return edgeKey + DELIM + idB + DELIM + idA; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/graph/JungToTabDelim.java b/core/src/main/java/org/mskcc/cbio/portal/graph/JungToTabDelim.java deleted file mode 100644 index 2fa56292dea..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/graph/JungToTabDelim.java +++ /dev/null @@ -1,70 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.graph; - -import edu.uci.ics.jung.graph.Graph; -import edu.uci.ics.jung.graph.util.Pair; - -import java.util.Iterator; - -/** - * Utility Class for Converting a JUNG Graph to a Tab-Delimited Tab Format. - * - * @author Ethan Cerami. - */ -public final class JungToTabDelim { - private static final String TAB = "\t"; - - /** - * Private Constructor to prevent instantiation. - */ - private JungToTabDelim() { - } - - /** - * Converts the Specified JUNG Graph to a Cytoscape SIF Format. - * - * @param g JUNG Graph. - * @return Simple Tab Delimited Format. - */ - public static String convertToSif(Graph g) { - StringBuffer buf = new StringBuffer(); - for (String edge : g.getEdges()) { - Pair pair = g.getEndpoints(edge); - String geneA = (String) pair.getFirst(); - String geneB = (String) pair.getSecond(); - buf.append(geneA).append(TAB).append(edge).append(TAB).append(geneB).append("\n"); - } - return buf.toString(); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/graph/NetworkOfInterest.java b/core/src/main/java/org/mskcc/cbio/portal/graph/NetworkOfInterest.java deleted file mode 100644 index 8897fb5704d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/graph/NetworkOfInterest.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.graph; - -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Interaction; -import org.mskcc.cbio.portal.dao.DaoException; - -import java.util.ArrayList; -import java.util.Collection; -import java.util.HashSet; - -import edu.uci.ics.jung.graph.Graph; - -/** - * Generates a Network of Interest, based on Input Set of Seed Genes. - * - * @author Ethan Cerami. - */ -public class NetworkOfInterest { - private String tabDelim; - private Graph graph; - - /** - * Constructor. - * - * @param geneList ArrayList of Seed Genes. - * @throws DaoException Database Error. - */ - public NetworkOfInterest (ArrayList geneList) throws DaoException { - this(geneList, null); - } - - /** - * Constructor. - * - * @param geneList ArrayList of Seed Genes. - * @throws DaoException Database Error. - */ - public NetworkOfInterest (ArrayList geneList, - Collection dataSources) throws DaoException { - ArrayList interactionList = new ArrayList(); - HashSet seedSet = new HashSet(); - - for (CanonicalGene gene: geneList) { - - // Get all interactions involving current gene. - ArrayList currentInteractionList = - null; - interactionList.addAll(currentInteractionList); - seedSet.add(gene.getHugoGeneSymbolAllCaps()); - } - - // Convert to JUNG to Graph - graph = InteractionToJung.createGraph(interactionList); - - // For now, mark all nodes that have degree = 1, and mark for removal - Collection vertexCollection = graph.getVertices(); - ArrayList vertexList = new ArrayList(vertexCollection); - ArrayList deleteList = new ArrayList(); - for (String gene: vertexList) { - int seedDegree = 0; - for (String neighbor : graph.getNeighbors(gene)) { - if (seedSet.contains(neighbor)) { - seedDegree++; - } - } - if (seedDegree == 1 && !seedSet.contains(gene)) { - deleteList.add(gene); - } - } - - // Remove marked genes - for (String gene: deleteList) { - graph.removeVertex(gene); - } - - // Convert to Tab Delim - tabDelim = JungToTabDelim.convertToSif(graph); - } - - /** - * Gets the Tab Delim Output. - * @return Simple Tab Delim Output. - */ - public String getTabDelim() { - return tabDelim; - } - - /** - * Gets the JUNG Graph. - * @return JUNG Graph Object. - */ - public Graph getGraph() { - return graph; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/AlleleSpecificCopyNumber.java b/core/src/main/java/org/mskcc/cbio/portal/model/AlleleSpecificCopyNumber.java deleted file mode 100644 index 17e40625830..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/AlleleSpecificCopyNumber.java +++ /dev/null @@ -1,185 +0,0 @@ -/* - * Copyright (c) 2019-2020 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; -import java.util.*; - -import static org.mskcc.cbio.maf.ValueTypeUtil.toFloat; -import static org.mskcc.cbio.maf.ValueTypeUtil.toInt; - -/** - * - * @author averyniceday. - */ -public class AlleleSpecificCopyNumber implements Serializable { - private final String ASCN_INT_COPY_NUMBER = "ascn_integer_copy_number"; - private final String ASCN_METHOD = "ascn_method"; - private final String CCF_EXPECTED_COPIES_UPPER = "ccf_expected_copies_upper"; - private final String CCF_EXPECTED_COPIES = "ccf_expected_copies"; - private final String CLONAL = "clonal"; - private final String MINOR_COPY_NUMBER = "minor_copy_number"; - private final String EXPECTED_ALT_COPIES = "expected_alt_copies"; - private final String TOTAL_COPY_NUMBER = "total_copy_number"; - - private final Set ACCEPTED_CLONAL_VALUES = new HashSet(Arrays.asList("CLONAL", "SUBCLONAL", "INDETERMINATE", "NA")); - - private long mutationEventId; - private int geneticProfileId; - private int sampleId; - private Integer ascnIntegerCopyNumber; - private String ascnMethod; - private Float ccfExpectedCopiesUpper; - private Float ccfExpectedCopies; - private String clonal; - private Integer minorCopyNumber; - private Integer expectedAltCopies; - private Integer totalCopyNumber; - - public AlleleSpecificCopyNumber(Map ascnData) { - this.ascnIntegerCopyNumber = toInt(ascnData.getOrDefault(ASCN_INT_COPY_NUMBER, null)); - this.ascnMethod = (String) ascnData.getOrDefault(ASCN_METHOD, null); - this.ccfExpectedCopiesUpper = toFloat(ascnData.getOrDefault(CCF_EXPECTED_COPIES_UPPER, null)); - this.ccfExpectedCopies = toFloat(ascnData.getOrDefault(CCF_EXPECTED_COPIES, null)); - this.clonal = normalizeClonalValue((String) ascnData.getOrDefault(CLONAL, null)); - this.minorCopyNumber = toInt(ascnData.getOrDefault(MINOR_COPY_NUMBER, null)); - this.expectedAltCopies = toInt(ascnData.getOrDefault(EXPECTED_ALT_COPIES, null)); - this.totalCopyNumber = toInt(ascnData.getOrDefault(TOTAL_COPY_NUMBER, null)); - } - - public void updateAscnUniqueKeyDetails(ExtendedMutation mutation) { - this.mutationEventId = mutation.getMutationEventId(); - this.geneticProfileId = mutation.getGeneticProfileId(); - this.sampleId = mutation.getSampleId(); - } - - public long getMutationEventId() { - return mutationEventId; - } - - public void setMutationEventId(long mutationEventId) { - this.mutationEventId = mutationEventId; - } - - public int getGeneticProfileId() { - return geneticProfileId; - } - - public void setGeneticProfileId(int geneticProfileId) { - this.geneticProfileId = geneticProfileId; - } - - public int getSampleId() { - return sampleId; - } - - public void setSampleId(int sampleId) { - this.sampleId = sampleId; - } - - public Integer getAscnIntegerCopyNumber() { - return ascnIntegerCopyNumber; - } - - public void setAscnIntegerCopyNumber(Integer ascnIntegerCopyNumber) { - this.ascnIntegerCopyNumber = ascnIntegerCopyNumber; - } - - public String getAscnMethod() { - return ascnMethod; - } - - public void setAscnMethod(String ascnMethod) { - this.ascnMethod = ascnMethod; - } - - public Float getCcfExpectedCopiesUpper() { - return ccfExpectedCopiesUpper; - } - - public void setCcfExpectedCopiesUpper(Float ccfExpectedCopiesUpper) { - this.ccfExpectedCopiesUpper = ccfExpectedCopiesUpper; - } - - public Float getCcfExpectedCopies() { - return ccfExpectedCopies; - } - - public void setCcfExpectedCopies(Float ccfExpectedCopies) { - this.ccfExpectedCopies = ccfExpectedCopies; - } - - public String getClonal() { - return clonal; - } - - public void setClonal(String clonal) { - this.clonal = clonal; - } - - public Integer getMinorCopyNumber() { - return minorCopyNumber; - } - - public void setMinorCopyNumber(Integer minorCopyNumber) { - this.minorCopyNumber = minorCopyNumber; - } - - public Integer getExpectedAltCopies() { - return expectedAltCopies; - } - - public void setExpectedAltCopies(Integer expectedAltCopies) { - this.expectedAltCopies = expectedAltCopies; - } - - public Integer getTotalCopyNumber() { - return totalCopyNumber; - } - - public void setTotalCopyNumber(Integer totalCopyNumber) { - this.totalCopyNumber = totalCopyNumber; - } - - private String normalizeClonalValue(String clonal) { - if (clonal == null) { - return null; - } - String upperCaseClonal = clonal.toUpperCase(); - if (ACCEPTED_CLONAL_VALUES.contains(upperCaseClonal)) { - return upperCaseClonal; - } - return "NA"; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/AnnotatedSampleSets.java b/core/src/main/java/org/mskcc/cbio/portal/model/AnnotatedSampleSets.java deleted file mode 100644 index 2d22dcd5cc8..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/AnnotatedSampleSets.java +++ /dev/null @@ -1,156 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.*; - -/** - * Annotated Sample Sets. - * - * @author Ethan Cerami - */ -public class AnnotatedSampleSets { - private static final String ALL_COMPLETE_TUMORS = "ALL COMPLETE TUMORS"; - private static final String ALL_TUMORS = "ALL TUMORS"; - private static final String ALL = "ALL"; - - private SampleList defaultSampleList; - - public AnnotatedSampleSets(List sampleSetList, Integer priorityLevel) { - this.defaultSampleList = determineDefaultSampleSet(sampleSetList, priorityLevel); - } - - public AnnotatedSampleSets(List sampleSetList) { - this(sampleSetList, 0); - } - - /** - * Gets the "best" default sample set. - * - * @return "best" default sample set. - */ - public SampleList getDefaultSampleList() { - return defaultSampleList; - } - - /** - * This code makes an attempts at selecting the "best" default sample set. - * - * - * @param sampleSetList List of all Sample Sets. - * @param priorityLevel Priority level, all priorities below this one will be ignored - * @return the "best" default sample set. - */ - private SampleList determineDefaultSampleSet(List sampleSetList, Integer priorityLevel) { - List priSampleList = new ArrayList(); - for (SampleList sampleSet : sampleSetList) { - Integer priority = null; - - // These are the new category overrides - switch (sampleSet.getSampleListCategory()) { - case ALL_CASES_WITH_MUTATION_AND_CNA_DATA: - priority = 0; - break; - case ALL_CASES_WITH_MUTATION_DATA: - priority = 1; - break; - case ALL_CASES_WITH_CNA_DATA: - priority = 2; - break; - } - - // If category matches none of the overrides, fallback to the old way - if(priority == null) { - registerPrioritySampleList(sampleSet, ALL_COMPLETE_TUMORS, 3, priSampleList); - registerPrioritySampleList(sampleSet, ALL_TUMORS, 4, priSampleList); - registerPrioritySampleList(sampleSet, ALL, 5, priSampleList); - } else { - // If we define a higher t-hold, just shift the priority level - if(priority < priorityLevel) - priority += 10; - - priSampleList.add(new SampleSetWithPriority(sampleSet, priority)); - } - } - - Collections.sort(priSampleList, new SampleSetWithPriorityComparator()); - if (priSampleList.size() > 0) { - return priSampleList.get(0).getSampleList(); - } else { - return failSafeReturn(sampleSetList); - } - } - - private SampleList failSafeReturn(List sampleSetList) { - if (sampleSetList.size() > 0) { - return sampleSetList.get(0); - } else { - return null; - } - } - - private void registerPrioritySampleList (SampleList sampleSet, String target, int priority, - List priSampleList) { - String name = sampleSet.getName(); - if (name.toUpperCase().startsWith(target)) { - priSampleList.add(new SampleSetWithPriority(sampleSet, priority)); - } - } -} - -class SampleSetWithPriority { - private SampleList sampleList; - private int priority; - - SampleSetWithPriority(SampleList sampleList, int priority) { - this.sampleList = sampleList; - this.priority = priority; - } - - public SampleList getSampleList() { - return sampleList; - } - - public int getPriority() { - return priority; - } -} - -class SampleSetWithPriorityComparator implements Comparator { - - public int compare(Object o0, Object o1) { - SampleSetWithPriority sampleSet0 = (SampleSetWithPriority) o0; - SampleSetWithPriority sampleSet1 = (SampleSetWithPriority) o1; - return Integer.valueOf(sampleSet0.getPriority()).compareTo(sampleSet1.getPriority()); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudy.java b/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudy.java deleted file mode 100644 index 1370436c2d9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudy.java +++ /dev/null @@ -1,465 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.Date; -import java.util.HashSet; -import java.util.Set; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.web_api.GetGeneticProfiles; - - - -/** - * This represents a cancer study, with a set of cases and some data sets. - * - * @author Ethan Cerami, Arthur Goldberg. - */ -public class CancerStudy { - /** - * NO_SUCH_STUDY Internal ID has not been assigned yet. - */ - public static final int NO_SUCH_STUDY = -1; - - private int studyID; // assigned by dbms auto increment - private String name; - private String description; - private String cancerStudyIdentifier; - private String typeOfCancerId; // required - private boolean publicStudy; // if true, a public study, otherwise private - private String pmid; - private String citation; - private Set groups; - private Date importDate; - private String referenceGenome; - - - /** - * Constructor. - * @param name Name of Cancer Study. - * @param description Description of Cancer Study. - * @param cancerStudyIdentifier Cancer Study Stable Identifier. - * @param typeOfCancerId Type of Cancer. - * @param publicStudy Flag to indicate if this is a public study. - */ - public CancerStudy(String name, String description, String cancerStudyIdentifier, - String typeOfCancerId, boolean publicStudy) { - super(); - this.studyID = CancerStudy.NO_SUCH_STUDY; - this.name = name; - this.description = description; - this.cancerStudyIdentifier = cancerStudyIdentifier; - this.typeOfCancerId = typeOfCancerId; - this.publicStudy = publicStudy; - } - - /** - * Indicates that this is a public study. - * @return true or false. - */ - public boolean isPublicStudy() { - return publicStudy; - } - - /** - * Marks this study as public or private. - * @param publicFlag Public Flag. - */ - public void setPublicStudy(boolean publicFlag) { - this.publicStudy = publicFlag; - } - - /** - * Gets the Cancer Study Stable Identifier. - * @return cancer study stable identifier. - */ - public String getCancerStudyStableId() { - return cancerStudyIdentifier; - } - - /** - * Gets the Type of Cancer. - * @return type of cancer. - */ - public String getTypeOfCancerId() { - return typeOfCancerId; - } - - /** - * Sets the Cancer Study Stable Identifier. - * @param cancerStudyIdentifier Cancer Study Stable Identifier. - */ - public void setCancerStudyStablId(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - - /** - * Gets the Internal ID associated with this record. - * @return internal integer ID. - */ - public int getInternalId() { - return studyID; - } - - /** - * Sets the Internal ID associated with this record. - * @param studyId internal integer ID. - */ - public void setInternalId(int studyId) { - this.studyID = studyId; - } - - /** - * Gets the Cancer Study Name. - * @return cancer study name. - */ - public String getName() { - return name; - } - - /** - * Sets the Cancer Study Name. - * @param name cancer study name. - */ - public void setName(String name) { - this.name = name; - } - - /** - * Gets the Cancer Study Description. - * @return cancer study description. - */ - public String getDescription() { - return description; - } - - /** - * Sets the Cancer Study Description. - * @param description cancer study description. - */ - public void setDescription(String description) { - this.description = description; - } - - public String getPmid() { - return pmid; - } - - public void setPmid(String pmid) { - this.pmid = pmid; - } - - public String getCitation() { - return citation; - } - - public void setCitation(String citation) { - this.citation = citation; - } - - public String getReferenceGenome() { return referenceGenome; } - - public void setReferenceGenome(String referenceGenome) { - this.referenceGenome = referenceGenome; - } - - /** - * Gets the genetic profiles. - * @return genetic profiles - * @throws DaoException database read error - */ - public ArrayList getGeneticProfiles() throws DaoException { - return GetGeneticProfiles.getGeneticProfiles(getCancerStudyStableId()); - } - - /* TODO: Add a tag to cancer study in order to get rid of redundant code execution. - During the talk it was decided not to use an additional tag for each cancer - study, so we need a rather ugly solution. This won't be hurting us much for now - but could result in performance issues if the portal ever gets heavy load traffic. - */ - /** - * Get mutation profile if any; otherwise, return null. - * - * @return mutation profile if there is mutation data; otherwise, null. - * @param geneticProfiles genetic profiles to search mutations on - */ - public GeneticProfile getMutationProfile(ArrayList geneticProfiles, - String caseId) throws DaoException { - for(GeneticProfile geneticProfile: geneticProfiles) { - if(geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MUTATION_EXTENDED && - acceptableCaseId(caseId, geneticProfile)) { - return geneticProfile; - } - } - - return null; - } - - private boolean acceptableCaseId(String caseId, GeneticProfile geneticProfile) throws DaoException { - if (caseId == null) return true; - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(geneticProfile.getCancerStudyId(), - StableIdUtil.getSampleId(caseId)); - return DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfile.getGeneticProfileId()); - } - - public GeneticProfile getMutationProfile(String caseId) throws DaoException { - return getMutationProfile(getGeneticProfiles(),caseId); - } - - public GeneticProfile getMutationProfile() throws DaoException { - return getMutationProfile(null); - } - - /** - * Checks if there is any mutation data associated with this cancer study. - * - * @return true if there is mutation data - * @param geneticProfiles genetic profiles to search mutations on - */ - public boolean hasMutationData(ArrayList geneticProfiles) throws DaoException { - return null != getMutationProfile(geneticProfiles,null); - } - - /** - * Get copy number alteration profile if any; otherwise, return null. - * - * @return cn profile if there is mutation data; otherwise, null. If - * showInAnalysisOnly is true, return cn profile shown in analysis tab only. - * @param geneticProfiles genetic profiles to search cna on - */ - public GeneticProfile getCopyNumberAlterationProfile(boolean showInAnalysisOnly) - throws DaoException { - return getCopyNumberAlterationProfile(null,showInAnalysisOnly); - } - - public boolean hasCnaData() throws DaoException { - GeneticProfile copyNumberAlterationProfile = getCopyNumberAlterationProfile(true); - return copyNumberAlterationProfile != null; - } - - /** - * Get copy number alteration profile if any; otherwise, return null. - * - * @return cn profile if there is cna data; otherwise, null. If - * showInAnalysisOnly is true, return cn profile shown in analysis tab only. - * @param geneticProfiles genetic profiles to search cna on - */ - public GeneticProfile getCopyNumberAlterationProfile(String caseId, boolean showInAnalysisOnly) - throws DaoException { - for(GeneticProfile geneticProfile: getGeneticProfiles()) { - if(geneticProfile.getGeneticAlterationType() == GeneticAlterationType.COPY_NUMBER_ALTERATION && - (!showInAnalysisOnly || geneticProfile.showProfileInAnalysisTab()) && - acceptableCaseId(caseId, geneticProfile)) { - return geneticProfile; - } - } - - return null; - } - - /** - * Get mRNA profile.. try to get a RNA-seq first then microarray. - * - * @return cn profile if there is mrna data; otherwise, null. - * @param geneticProfiles genetic profiles to search mutations on - */ - public GeneticProfile getMRnaZscoresProfile() - throws DaoException { - return getMRnaZscoresProfile(null); - } - - public boolean hasMRnaData() throws DaoException { - GeneticProfile mrnaProfile = getMRnaZscoresProfile(); - return mrnaProfile != null; - } - - /** - * Get mRNA Zscores profile. try to get a RNA-seq first then microarray. - * - * @return mrna profile if there is mrna data; otherwise, null. - * @param geneticProfiles genetic profiles to search mrna on - */ - public GeneticProfile getMRnaZscoresProfile(String caseId) - throws DaoException { - GeneticProfile ret = null; - for(GeneticProfile geneticProfile: getGeneticProfiles()) { - if(geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MRNA_EXPRESSION && - acceptableCaseId(caseId, geneticProfile)) { - String stableId = geneticProfile.getStableId().toLowerCase(); - if (stableId.matches(".+rna_seq.*_zscores")) { - return geneticProfile; - } else if (stableId.endsWith("_zscores")) { - ret = geneticProfile; - } - } - } - - return ret; - } - - /** - * Similar to: - * @see #hasMutationData(java.util.ArrayList) - * but this method grabs all the genetic profiles associated to the cancer study - * Utilizes @link #getGeneticProfiles() - * - * @return true if there is mutation data - * @throws DaoException database read error - */ - public boolean hasMutationData() throws DaoException { - return hasMutationData(getGeneticProfiles()); - } - - /** - * - * @return true if copy number segment data exist for this study; false, otherwise. - * @throws DaoException - */ - public boolean hasCnaSegmentData() throws DaoException { - return DaoCopyNumberSegment.segmentDataExistForCancerStudy(studyID); - } - - public Set getFreshGroups() throws DaoException - { - return DaoCancerStudy.getFreshGroups(studyID); - } - - public Set getGroups() { - if (groups==null) { - return Collections.emptySet(); - } - return groups; - } - - /** - * Determines the set of groups by splitting the given groups string - * on ';' and transforming all group names to their UPPER CASE - * representation (this last one is in compliance to what is expected - * in CancerStudyPermissionEvaluator.hasPermission() ). - * - * @param groups semi-colon (;) delimited groups - */ - public void setGroupsInUpperCase(String groups) { - if (groups==null) { - this.groups = null; - return; - } - - this.groups = new HashSet(Arrays.asList(groups.toUpperCase().split(";"))); - } - - /** - * Equals. - * @param otherCancerStudy Other Cancer Study. - * @return true of false. - */ - @Override - public boolean equals(Object otherCancerStudy) { - if (this == otherCancerStudy) { - return true; - } - - if (!(otherCancerStudy instanceof CancerStudy)) { - return false; - } - - CancerStudy that = (CancerStudy) otherCancerStudy; - return - EqualsUtil.areEqual(this.publicStudy, that.publicStudy) && - EqualsUtil.areEqual(this.cancerStudyIdentifier, - that.cancerStudyIdentifier) && - EqualsUtil.areEqual(this.description, that.description) && - EqualsUtil.areEqual(this.name, that.name) && - EqualsUtil.areEqual(this.typeOfCancerId, that.typeOfCancerId) && - EqualsUtil.areEqual(this.studyID, that.studyID); - } - - @Override - public int hashCode() { - int hash = 5; - hash = 11 * hash + this.studyID; - hash = 11 * hash + (this.name != null ? this.name.hashCode() : 0); - hash = 11 * hash + (this.description != null ? this.description.hashCode() : 0); - hash = 11 * hash + (this.cancerStudyIdentifier != null ? this.cancerStudyIdentifier.hashCode() : 0); - hash = 11 * hash + (this.typeOfCancerId != null ? this.typeOfCancerId.hashCode() : 0); - hash = 11 * hash + (this.publicStudy ? 1 : 0); - return hash; - } - - /** - * toString() Override. - * @return string summary of cancer study. - */ - @Override - public String toString() { - return "CancerStudy [studyID=" + studyID + ", name=" + name + ", description=" - + description + ", cancerStudyIdentifier=" + cancerStudyIdentifier - + ", typeOfCancerId=" + typeOfCancerId + ", publicStudy=" + publicStudy + "]"; - } - - public boolean hasMutSigData() throws DaoException { - return !DaoMutSig.hasMutsig(this); - } - - public boolean hasGisticData() throws DaoException { - return DaoGistic.hasGistic(this); - } - - public boolean hasSurvivalData() throws DaoException { - Set attrs = DaoClinicalData.getDistinctParameters(studyID); - return attrs.contains(ClinicalAttribute.OS_STATUS) || - attrs.contains(ClinicalAttribute.DFS_STATUS); - } - - public String getTypeOfCancer() throws DaoException { - return DaoTypeOfCancer.getTypeOfCancerById(this.typeOfCancerId).getName(); - } - - /** - * @return the importDate - */ - public Date getImportDate() { - return importDate; - } - - /** - * @param importDate the importDate to set - */ - public void setImportDate(Date importDate) { - this.importDate = importDate; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudyStats.java b/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudyStats.java deleted file mode 100644 index 787cf235ff2..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudyStats.java +++ /dev/null @@ -1,103 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoMutation; -import org.mskcc.cbio.portal.util.EqualsUtil; -import org.mskcc.cbio.portal.web_api.GetGeneticProfiles; - -import java.util.ArrayList; - -/** - * This class encapsulates cancer study stats displayed on the Data Sets Page. - * - * @author Benjamin Gross - */ -public class CancerStudyStats { - - private String stableID; - private String studyName; - private String reference; - private Integer all; - private Integer sequenced; - private Integer cna; - private Integer rnaSEQ; - private Integer tumorMRNA; - private Integer normal; - private Integer tumorMIRNA; - private Integer methylation; - private Integer rppa; - private Integer complete; - private Integer massSpectrometry; - - /** - * Constructor. - * - */ - public CancerStudyStats(String stableID, String studyName, String reference, Integer all, Integer sequenced, - Integer cna, Integer rnaSEQ, Integer tumorMRNA, Integer normal, - Integer tumorMIRNA, Integer methylation, Integer rppa, Integer complete, Integer massSpectrometry) { - - this.stableID = stableID; - this.studyName = studyName; - this.reference = reference; - this.all = all; - this.sequenced = sequenced; - this.cna = cna; - this.rnaSEQ = rnaSEQ; - this.tumorMRNA = tumorMRNA; - this.normal = normal; - this.tumorMIRNA = tumorMIRNA; - this.methylation = methylation; - this.rppa = rppa; - this.complete = complete; - this.massSpectrometry = massSpectrometry; - } - - // accessors - public String getStableID() { return this.stableID; } - public String getStudyName() { return this.studyName; } - public String getReference() { return this.reference; } - public Integer getAll() { return this.all; } - public Integer getSequenced() { return this.sequenced; } - public Integer getCNA() { return this.cna; } - public Integer getRNASEQ() { return this.rnaSEQ; } - public Integer getTumorMRNA() { return this.tumorMRNA; } - public Integer getNormal() { return this.normal; } - public Integer getTumorMIRNA() { return this.tumorMIRNA; } - public Integer getMethylation() { return this.methylation; } - public Integer getRPPA() { return this.rppa; } - public Integer getComplete() { return this.complete; } - public Integer getMassSpectrometry() { return this.massSpectrometry; } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudyTags.java b/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudyTags.java deleted file mode 100644 index 86fad5a7802..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CancerStudyTags.java +++ /dev/null @@ -1,23 +0,0 @@ -package org.mskcc.cbio.portal.model; - -public class CancerStudyTags { - - private int cancerStudyId; - private String tags; - - public int getCancerStudyId() { - return cancerStudyId; - } - - public String getTags() { - return tags; - } - - public void setTags(String tags) { - this.tags = tags; - } - - public void setCancerStudyId(int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CanonicalGene.java b/core/src/main/java/org/mskcc/cbio/portal/model/CanonicalGene.java deleted file mode 100644 index b3ed90d5db1..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CanonicalGene.java +++ /dev/null @@ -1,226 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.*; -import java.io.Serializable; - -import com.fasterxml.jackson.annotation.JsonIgnore; -import com.fasterxml.jackson.annotation.JsonProperty; - -/** - * Class to wrap Entrez Gene ID, HUGO Gene Symbols,etc. - */ -public class CanonicalGene extends Gene implements Serializable { - public static final String MIRNA_TYPE = "miRNA"; - public static final String PHOSPHOPROTEIN_TYPE = "phosphoprotein"; - private int geneticEntityId; - @JsonProperty("entrezGeneId") - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - private long entrezGeneId; - @JsonProperty("hugoGeneSymbol") - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - private String hugoGeneSymbol; - private Set aliases; - private double somaticMutationFrequency; - private String type; - - /** - * @deprecated: hardly used (2 places that are not relevant, - * potentially dead code), should be deprecated - * - * @param hugoGeneSymbol - */ - public CanonicalGene(String hugoGeneSymbol) { - this(hugoGeneSymbol, null); - } - - /** - * This constructor can be used to get a rather empty object - * representing this gene symbol. - * - * Note: Its most important use is for data loading of "phosphogenes" - * (ImportTabDelimData.importPhosphoGene) where a dummy gene record - * is generated on the fly for this entity. TODO this constructor needs - * to be deprecated once "phosphogenes" become a genetic entity on their own. - * - * @param hugoGeneSymbol - */ - public CanonicalGene(String hugoGeneSymbol, Set aliases) { - this(-1, -1, hugoGeneSymbol, aliases); - } - - /** - * This constructor can be used when geneticEntityId is not yet known, - * e.g. in case of a new gene (like when adding new genes in ImportGeneData), or is - * not needed (like when retrieving mutation data) - * - * @param entrezGeneId - * @param hugoGeneSymbol - */ - public CanonicalGene(long entrezGeneId, String hugoGeneSymbol) { - this(-1, entrezGeneId, hugoGeneSymbol, null); - } - - /** - * This constructor can be used when geneticEntityId is not yet known, - * e.g. in case of a new gene (like when adding new genes in ImportGeneData), or is - * not needed (like when retrieving mutation data) - * - * @param entrezGeneId - * @param hugoGeneSymbol - * @param aliases - */ - public CanonicalGene(long entrezGeneId, String hugoGeneSymbol, Set aliases) { - this(-1, entrezGeneId, hugoGeneSymbol, aliases); - } - - public CanonicalGene(int geneticEntityId, long entrezGeneId, String hugoGeneSymbol, Set aliases) { - this.geneticEntityId = geneticEntityId; - this.entrezGeneId = entrezGeneId; - this.hugoGeneSymbol = hugoGeneSymbol; - setAliases(aliases); - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public String getType() { - return type; - } - - public void setType(String type) { - this.type = type; - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public Set getAliases() { - if (aliases==null) { - return Collections.emptySet(); - } - return Collections.unmodifiableSet(aliases); - } - - public void setAliases(Set aliases) { - if (aliases==null) { - this.aliases = null; - return; - } - - Map map = new HashMap(aliases.size()); - for (String alias : aliases) { - map.put(alias.toUpperCase(), alias); - } - - this.aliases = new HashSet(map.values()); - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public int getGeneticEntityId() { - return geneticEntityId; - } - - public void setGeneticEntityId(int geneticEntityId) { - this.geneticEntityId = geneticEntityId; - } - - public long getEntrezGeneId() { - return entrezGeneId; - } - - public void setEntrezGeneId(long entrezGeneId) { - this.entrezGeneId = entrezGeneId; - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public String getHugoGeneSymbolAllCaps() { - return hugoGeneSymbol.toUpperCase(); - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public String getStandardSymbol() { - return getHugoGeneSymbolAllCaps(); - } - - public void setHugoGeneSymbol(String hugoGeneSymbol) { - this.hugoGeneSymbol = hugoGeneSymbol; - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public boolean isMicroRNA() { - return MIRNA_TYPE.equals(type); - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public boolean isPhosphoProtein() { - return PHOSPHOPROTEIN_TYPE.equals(type); - } - - @Override - public String toString() { - return this.getHugoGeneSymbolAllCaps(); - } - - @Override - public boolean equals(Object obj0) { - if (!(obj0 instanceof CanonicalGene)) { - return false; - } - - CanonicalGene gene0 = (CanonicalGene) obj0; - if (gene0.getEntrezGeneId() == entrezGeneId) { - return true; - } - return false; - } - - @JsonIgnore - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - public double getSomaticMutationFrequency() { - return somaticMutationFrequency; - } - - public void setSomaticMutationFrequency(double somaticMutationFrequency) { - this.somaticMutationFrequency = somaticMutationFrequency; - } - - @Override - public int hashCode() { - return (int) entrezGeneId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CaseFilter.java b/core/src/main/java/org/mskcc/cbio/portal/model/CaseFilter.java deleted file mode 100644 index dd2ced20748..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CaseFilter.java +++ /dev/null @@ -1,63 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.HashSet; - -public class CaseFilter { - private String paramName; - private HashSet valueSet; - - public CaseFilter(String paramName, HashSet valueSet) { - this.paramName = paramName; - this.valueSet = valueSet; - } - - public String getParamName() { - return paramName; - } - - public HashSet getParamValueSet() { - return valueSet; - } - - public String toString() { - StringBuffer buf = new StringBuffer(); - buf.append("Filter: " + paramName + " ["); - for (String value: valueSet) { - buf.append(value + "#"); - } - buf.append("]"); - return buf.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CategorizedGeneticProfileSet.java b/core/src/main/java/org/mskcc/cbio/portal/model/CategorizedGeneticProfileSet.java deleted file mode 100644 index e5aad0de0bb..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CategorizedGeneticProfileSet.java +++ /dev/null @@ -1,225 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.Comparator; -import java.util.HashMap; - -/** - * Categorized Set of Genetic Profiles. - * - * @author Ethan Cerami - */ -public class CategorizedGeneticProfileSet { - private static final String GISTIC = "GISTIC"; - private static final String RAE = "RAE"; - - private ArrayList mutationProfileList = new ArrayList(); - private ArrayList gisticProfileList = new ArrayList(); - private ArrayList raeProfileList = new ArrayList(); - private ArrayList otherCnaProfileList = new ArrayList(); - - /** - * Constructor. - * - * @param geneticProfileList All genetic profiles associated with a cancer study. - */ - public CategorizedGeneticProfileSet(ArrayList geneticProfileList) { - for (GeneticProfile currentProfile : geneticProfileList) { - addGeneticProfile(currentProfile); - } - } - - /** - * Gets the Default Copy Number Profile. - * - * An individual cancer study may have multiple copy number profiles associated with it. - * It is sometimes useful, however to have a single "default" copy number profile. - * - * This default copy number profile is determined by the following order of precedence rules: - * - * - Any GISTIC profile. - * - Any RAE profile. - * - Any other CNA profile. - * - * @return GeneticProfile Object. - */ - public GeneticProfile getDefaultCnaProfile() { - ArrayList> orderOfPredenceList - = new ArrayList>(); - orderOfPredenceList.add(gisticProfileList); - orderOfPredenceList.add(raeProfileList); - // Now prioritize the ones that are shown in the analysis tab - Collections.sort(otherCnaProfileList, new Comparator() { - @Override - public int compare(GeneticProfile geneticProfileA, GeneticProfile geneticProfileB) { - int a = geneticProfileA.showProfileInAnalysisTab() ? 1 : 0; - int b = geneticProfileB.showProfileInAnalysisTab() ? 1 : 0; - - return b-a; - } - }); - orderOfPredenceList.add(otherCnaProfileList); - return getFirstPriorityProfile(orderOfPredenceList); - } - - /** - * Gets the Default mutation profile. - * - * An individual cancer study may have multiple mutation profiles associated with it. - * It is sometimes useful, however to have a single "default" mutation profile. - * - * The default mutation profile is defined as the first mutation profile associated - * with the associated cancer study. - * - * @return GeneticProfile Object. - */ - public GeneticProfile getDefaultMutationProfile() { - if (mutationProfileList.size() > 0) { - return mutationProfileList.get(0); - } else { - return null; - } - } - - /** - * Gets a hashMap of the default mutation and copy number profiles. - * - * @return HashMap of Genetic Profiles, indexed by their stable IDs. - */ - public HashMap getDefaultMutationAndCopyNumberMap() { - return getDefaultGeneticProfileMap(true, true); - } - - /** - * Gets a hashMap of the default mutation profiles. - * - * @return HashMap of Genetic Profiles, indexed by their stable IDs. - */ - public HashMap getDefaultMutationMap() { - return getDefaultGeneticProfileMap(false, true); - } - - /** - * Gets a hashMap of the default copy number profiles. - * - * @return HashMap of Genetic Profiles, indexed by their stable IDs. - */ - public HashMap getDefaultCopyNumberMap() { - return getDefaultGeneticProfileMap(true, false); - } - - /** - * Gets a hashMap of the default mutation and copy number profiles. - * Provides functionality to exclude one of the profile types. - * - * @return HashMap of Genetic Profiles, indexed by their stable IDs. - */ - private HashMap getDefaultGeneticProfileMap(boolean includeCNA, boolean includeMutation) { - HashMap defaultProfileSet = new HashMap(); - - if(includeCNA) - conditionallyAddProfileToSet(getDefaultCnaProfile(), defaultProfileSet); - - if(includeMutation) - conditionallyAddProfileToSet(getDefaultMutationProfile(), defaultProfileSet); - - return defaultProfileSet; - } - - /** - * Gets number of default mutation and copy number profiles. - * - * @return number of default genetic profiles. - */ - public int getNumDefaultMutationAndCopyNumberProfiles() { - return getDefaultMutationAndCopyNumberMap().size(); - } - - private void addGeneticProfile(GeneticProfile geneticProfile) { - GeneticAlterationType geneticAlterationType = geneticProfile.getGeneticAlterationType(); - if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - addCopyNumberProfile(geneticProfile); - } else if (geneticAlterationType == GeneticAlterationType.MUTATION_EXTENDED) { - addMutationProfile(geneticProfile); - } - } - - private void conditionallyAddProfileToSet(GeneticProfile geneticProfile, - HashMap defaultProfileSet) { - if (geneticProfile != null) { - defaultProfileSet.put(geneticProfile.getStableId(), geneticProfile); - } - } - - private void addMutationProfile(GeneticProfile mutationProfile) { - mutationProfileList.add(mutationProfile); - } - - private void addCopyNumberProfile(GeneticProfile copyNumberProfile) { - //Using stableId as this is currently the more reliable than the name for example, - //since stableId is strictly validated before loading into DB: - String stableId = copyNumberProfile.getStableId(); - if (stableId.toLowerCase().endsWith(GISTIC.toLowerCase())) { - addGisticProfile(copyNumberProfile); - } else if (stableId.toLowerCase().endsWith(RAE.toLowerCase())) { - addRaeProfile(copyNumberProfile); - } else { - addOtherCnaProfile(copyNumberProfile); - } - } - - private void addGisticProfile(GeneticProfile gisticProfile) { - gisticProfileList.add(gisticProfile); - } - - private void addRaeProfile(GeneticProfile raeProfile) { - raeProfileList.add(raeProfile); - } - - private void addOtherCnaProfile(GeneticProfile otherCnaProfile) { - otherCnaProfileList.add(otherCnaProfile); - } - - private GeneticProfile getFirstPriorityProfile(ArrayList> - orderOfPredenceList) { - for (ArrayList currentList: orderOfPredenceList) { - if (currentList.size() > 0) { - return currentList.get(0); - } - } - return null; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalAttribute.java b/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalAttribute.java deleted file mode 100755 index 927610b45de..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalAttribute.java +++ /dev/null @@ -1,145 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.List; -import java.util.Arrays; -import java.util.ArrayList; - -public class ClinicalAttribute { - - // some defined statics - public static final String NA = "NA"; - public static final String DEFAULT_DATATYPE = "STRING"; - public static final String PATIENT_ATTRIBUTE = "PATIENT"; - public static final String SAMPLE_ATTRIBUTE = "SAMPLE"; - public static final String MISSING = "MISSING"; - public static final String OS_STATUS = "OS_STATUS"; - public static final String OS_MONTHS = "OS_MONTHS"; - public static final String DFS_STATUS = "DFS_STATUS"; - public static final String DFS_MONTHS = "DFS_MONTHS"; - public static final String AGE_AT_DIAGNOSIS = "AGE"; - // two additional variables for multi-cancer - public static final String CANCER_TYPE = "CANCER_TYPE"; // may have to change this to MAIN_CANCER_TYPE - public static final String CANCER_TYPE_DETAILED = "CANCER_TYPE_DETAILED"; // may have to change this to CANCER_TYPE - public static final String SAMPLE_COUNT = "SAMPLE_COUNT"; - - public static final List survivalAttributes = initializeSurvivalAttributeList(); - private static List initializeSurvivalAttributeList() { - return Arrays.asList(AGE_AT_DIAGNOSIS, OS_STATUS, OS_MONTHS, DFS_STATUS, DFS_MONTHS); - } - - private String attributeId; - private String displayName; - private String description; - private String datatype; - private boolean patientAttribute; - private String priority; - private Integer cancerStudyId; - - public ClinicalAttribute(String attributeId, String displayName, String description, - String datatype, boolean patientAttribute, String priority, Integer cancerStudyId) { - this.attributeId = attributeId; - this.displayName = displayName; - this.description = description; - this.datatype = datatype; - this.patientAttribute = patientAttribute; - this.priority = priority; - this.cancerStudyId = cancerStudyId; - } - - @Override - public String toString() { - return "ClinicalAttribute[" + - attributeId + "," + - displayName + "," + - description + "," + - priority + "," + - datatype + "," + - String.valueOf(cancerStudyId) + "]"; - } - - public String getAttrId() { - return attributeId; - } - - public void setAttributeId(String attributeId) { - this.attributeId = attributeId; - } - - public String getDisplayName() { - return displayName; - } - - public void setDisplayName(String displayName) { - this.displayName = displayName; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public String getDatatype() { - return datatype; - } - - public void setDatatype(String datatype) { - this.datatype = datatype; - } - - public boolean isPatientAttribute() { - return patientAttribute; - } - - public void setPatientAttribute(boolean patientAttribute) { - this.patientAttribute = patientAttribute; - } - - public String getPriority() { - return priority; - } - - public void setPriority(String priority) { - this.priority = priority; - } - public Integer getCancerStudyId() { - return cancerStudyId; - } - public void setCancerStudyId(Integer cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalAttributeAbstract.java b/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalAttributeAbstract.java deleted file mode 100644 index 35696b5e8cb..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalAttributeAbstract.java +++ /dev/null @@ -1,59 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -public class ClinicalAttributeAbstract { - private String displayName; - private String description; - - public ClinicalAttributeAbstract(String displayName, String description) { - this.displayName = displayName; - this.description = description; - } - - public String getDisplayName() { - return displayName; - } - - public void setDisplayName(String displayName) { - this.displayName = displayName; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalData.java b/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalData.java deleted file mode 100644 index 97ed3ad0466..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalData.java +++ /dev/null @@ -1,111 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * Encapsulates Clinical Data. - * - * @author Gideon Dresdner - */ -public class ClinicalData { - private int cancerStudyId; - private String stableId; - private String attrId; - private String attrVal; - - /** - * Constructor - */ - public ClinicalData() { - this(-1, "", "", ""); - } - - public ClinicalData(ClinicalData other) { - this(other.getCancerStudyId(), other.getStableId(), other.getAttrId(), other.getAttrVal()); - } - - /** - * Constructor - * - * @param cancerStudyId database id of cancer study - * @param stableId stable id of the patient or sample - * @param attrId database id of the attribute - * @param attrVal value of the clinical attribute given above - */ - public ClinicalData(int cancerStudyId, - String stableId, - String attrId, - String attrVal) { - - this.cancerStudyId = cancerStudyId; - this.stableId = stableId; - this.attrId = attrId; - this.attrVal = attrVal; - } - - public int getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public String getAttrId() { - return attrId; - } - - public void setAttrId(String attrId) { - this.attrId = attrId; - } - - public String getAttrVal() { - return attrVal; - } - - public void setAttrVal(String attrVal) { - this.attrVal = attrVal; - } - - public String toString() { - return String.format("ClinicalData[cancerStudyId=%d, %s, %s, %s]", cancerStudyId, stableId, attrId, attrVal); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalEvent.java b/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalEvent.java deleted file mode 100644 index 640aeab8a7c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalEvent.java +++ /dev/null @@ -1,101 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.HashMap; -import java.util.Map; - -/** - * - * @author gaoj - */ -public class ClinicalEvent { - private Long clinicalEventId; - private Integer patientId; - private String eventType; - private Long startDate; - private Long stopDate; - private Map eventData = new HashMap(0); - - public Long getClinicalEventId() { - return clinicalEventId; - } - - public void setClinicalEventId(Long clinicalEventId) { - this.clinicalEventId = clinicalEventId; - } - - public int getPatientId() { - return patientId; - } - - public void setPatientId(int patientId) { - this.patientId = patientId; - } - - public String getEventType() { - return eventType; - } - - public void setEventType(String eventType) { - this.eventType = eventType; - } - - public Long getStartDate() { - return startDate; - } - - public void setStartDate(Long startDate) { - this.startDate = startDate; - } - - public Long getStopDate() { - return stopDate; - } - - public void setStopDate(Long stopDate) { - this.stopDate = stopDate; - } - - public Map getEventData() { - return eventData; - } - - public void setEventData(Map eventData) { - this.eventData = eventData; - } - - public void addEventDatum(String key, String value) { - eventData.put(key, value); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalParameterMap.java b/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalParameterMap.java deleted file mode 100644 index af9382276a3..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ClinicalParameterMap.java +++ /dev/null @@ -1,81 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.HashSet; -import java.util.Iterator; -import java.util.Map; -import java.util.Set; - -/** - * Encapsulates any type of Clinical Parameter. - */ -public class ClinicalParameterMap -{ - public static final String NA = "NA"; - private String name; - private Map valueMap; - private Set uniqueCategories = new HashSet(); - - public ClinicalParameterMap(String name, Map valueMap) - { - this.name = name; - this.valueMap = valueMap; - - Iterator keyIterator = valueMap.keySet().iterator(); - - while (keyIterator.hasNext()) - { - String caseId = keyIterator.next(); - String value = valueMap.get(caseId); - uniqueCategories.add(value); - } - } - - public String getName() { - return name; - } - - public Set getDistinctCategories() { - return this.uniqueCategories; - } - - public String getValue(String caseId) - { - if (valueMap.containsKey(caseId)) { - return valueMap.get(caseId); - } else { - return NA; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CnaEvent.java b/core/src/main/java/org/mskcc/cbio/portal/model/CnaEvent.java deleted file mode 100644 index 5192d031982..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CnaEvent.java +++ /dev/null @@ -1,262 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.cbioportal.model.CNA; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; - -/** - * - * @author jgao - */ -public class CnaEvent { - private int sampleId; - private int cnaProfileId; - private Event event; - private String driverFilter; - private String driverFilterAnnotation; - private String driverTiersFilter; - private String driverTiersFilterAnnotation; - private String annotationJson; - - public static class Event { - private long eventId; - private CanonicalGene gene; - private CNA alteration; - - public long getEventId() { - return eventId; - } - - public void setEventId(long eventId) { - this.eventId = eventId; - } - - public CanonicalGene getGene() { - return gene; - } - - public void setGene(CanonicalGene gene) { - this.gene = gene; - } - - public void setEntrezGeneId(long entrezGeneId) { - setGene(DaoGeneOptimized.getInstance().getGene(entrezGeneId)); - if (gene == null) { - throw new IllegalArgumentException("Could not find entrez gene id: " + entrezGeneId); - } - } - - public CNA getAlteration() { - return alteration; - } - - public void setAlteration(CNA alteration) { - this.alteration = alteration; - } - - public void setAlteration(short alteration) { - this.alteration = CNA.getByCode(alteration); - if (this.alteration == null) { - throw new IllegalArgumentException("wrong copy number alteration"); - } - } - - @Override - public int hashCode() { - int hash = 3; - hash = 97 * hash + (this.gene != null ? this.gene.hashCode() : 0); - hash = 97 * hash + (this.alteration != null ? this.alteration.hashCode() : 0); - return hash; - } - - /** - * Compare by gene and alteration, - * but not by eventId - */ - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final Event other = (Event) obj; - if (this.gene != other.gene && (this.gene == null || !this.gene.equals(other.gene))) { - return false; - } - if (this.alteration != other.alteration) { - return false; - } - return true; - } - - } - - public CnaEvent(int sampleId, int cnaProfileId, long entrezGeneId, short alteration) { - event = new Event(); - setEntrezGeneId(entrezGeneId); - this.sampleId = sampleId; - this.cnaProfileId = cnaProfileId; - event.setAlteration(alteration); - } - - public CNA getAlteration() { - return event.alteration; - } - - public void setAlteration(CNA alteration) { - event.setAlteration(alteration); - } - - public void setAlteration(short alteration) { - event.setAlteration(CNA.getByCode(alteration)); - } - - public int getSampleId() { - return sampleId; - } - - public void setSampleId(int sampleId) { - this.sampleId = sampleId; - } - - public int getCnaProfileId() { - return cnaProfileId; - } - - public void setCnaProfileId(int cnaProfileId) { - this.cnaProfileId = cnaProfileId; - } - - public long getEntrezGeneId() { - return event.getGene().getEntrezGeneId(); - } - - public String getGeneSymbol() { - return event.getGene().getHugoGeneSymbolAllCaps(); - } - - public void setEntrezGeneId(long entrezGeneId) { - event.setEntrezGeneId(entrezGeneId); - if (event.gene == null) { - throw new IllegalArgumentException("Could not find entrez gene id: "+entrezGeneId); - } - } - - public long getEventId() { - return event.getEventId(); - } - - public void setEventId(long eventId) { - event.setEventId(eventId); - } - - public Event getEvent() { - return event; - } - - public void setEvent(Event event) { - this.event = event; - } - - public String getDriverFilter() { - return driverFilter; - } - - public void setDriverFilter(String driverFilter) { - this.driverFilter = driverFilter; - } - - public String getDriverFilterAnnotation() { - return driverFilterAnnotation; - } - - public void setDriverFilterAnnotation(String driverFilterAnnotation) { - this.driverFilterAnnotation = driverFilterAnnotation; - } - - public String getDriverTiersFilter() { - return driverTiersFilter; - } - - public void setDriverTiersFilter(String driverTiersFilter) { - this.driverTiersFilter = driverTiersFilter; - } - - public String getDriverTiersFilterAnnotation() { - return driverTiersFilterAnnotation; - } - - public void setDriverTiersFilterAnnotation(String driverTiersFilterAnnotation) { - this.driverTiersFilterAnnotation = driverTiersFilterAnnotation; - } - - public String getAnnotationJson() { - return annotationJson; - } - - public void setAnnotationJson(String annotationJson) { - this.annotationJson = annotationJson; - } - - @Override - public int hashCode() { - int hash = 5; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final CnaEvent other = (CnaEvent) obj; - if (!(this.sampleId == other.sampleId)) { - return false; - } - if (this.cnaProfileId != other.cnaProfileId) { - return false; - } - if (this.event != other.event && (this.event == null || !this.event.equals(other.event))) { - return false; - } - return true; - } - - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Coexpression.java b/core/src/main/java/org/mskcc/cbio/portal/model/Coexpression.java deleted file mode 100644 index d805386e2b9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Coexpression.java +++ /dev/null @@ -1,138 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.HashSet; -import java.util.Set; - -/** - * - * @author jgao - */ -public class Coexpression { - private long gene1; - private long gene2; - private int profileId; - private double pearson; - private double spearman; - - public Coexpression(long gene1, long gene2, int profileId, double pearson, double spearman) { - this.gene1 = gene1; - this.gene2 = gene2; - this.profileId = profileId; - this.pearson = pearson; - this.spearman = spearman; - } - - public long getGene1() { - return gene1; - } - - public void setGene1(long gene1) { - this.gene1 = gene1; - } - - public long getGene2() { - return gene2; - } - - public void setGene2(long gene2) { - this.gene2 = gene2; - } - - public int getProfileId() { - return profileId; - } - - public void setProfileId(int profileId) { - this.profileId = profileId; - } - - public double getPearson() { - return pearson; - } - - public void setPearson(double pearson) { - this.pearson = pearson; - } - - public double getSpearman() { - return spearman; - } - - public void setSpearman(double spearman) { - this.spearman = spearman; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 97 * hash + this.profileId; - Set genes = new HashSet(2); - genes.add(gene1); - genes.add(gene2); - hash = 97 * hash + (genes != null ? genes.hashCode() : 0); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final Coexpression other = (Coexpression) obj; - if (this.profileId != other.profileId) { - return false; - } - - Set genes = new HashSet(2); - genes.add(gene1); - genes.add(gene2); - - Set otherGenes = new HashSet(2); - genes.add(other.gene1); - genes.add(other.gene2); - - if (!genes.equals(otherGenes)) { - return false; - } - return true; - } - - - - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberSegment.java b/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberSegment.java deleted file mode 100644 index ff0e90db348..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberSegment.java +++ /dev/null @@ -1,123 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * - * @author jgao - */ -public class CopyNumberSegment { - private long segId; - private int cancerStudyId; - private int sampleId; - private String chr; // 1-22,X/Y,M - private long start; - private long end; - private int numProbes; - private double segMean; - - public CopyNumberSegment(int cancerStudyId, int sampleId, String chr, - long start, long end, int numProbes, double segMean) { - this.cancerStudyId = cancerStudyId; - this.sampleId = sampleId; - this.chr = chr; - this.start = start; - this.end = end; - this.numProbes = numProbes; - this.segMean = segMean; - } - - public int getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getChr() { - return chr; - } - - public void setChr(String chr) { - this.chr = chr; - } - - public long getEnd() { - return end; - } - - public void setEnd(long end) { - this.end = end; - } - - public int getNumProbes() { - return numProbes; - } - - public void setNumProbes(int numProbes) { - this.numProbes = numProbes; - } - - public int getSampleId() { - return sampleId; - } - - public void setSampleId(int sampleId) { - this.sampleId = sampleId; - } - - public long getSegId() { - return segId; - } - - public void setSegId(long segId) { - this.segId = segId; - } - - public double getSegMean() { - return segMean; - } - - public void setSegMean(double segMean) { - this.segMean = segMean; - } - - public long getStart() { - return start; - } - - public void setStart(long start) { - this.start = start; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberSegmentFile.java b/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberSegmentFile.java deleted file mode 100644 index a0aa80c3a9c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberSegmentFile.java +++ /dev/null @@ -1,65 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -public class CopyNumberSegmentFile -{ - public static enum ReferenceGenomeId - { - hg18("hg18"), - hg19("hg19"), - hg38("hg38"), - mm10("mm10"); - - private String propertyName; - - ReferenceGenomeId(String propertyName) { this.propertyName = propertyName; } - public String toString() { return propertyName; } - static public boolean has(String value) - { - if (value == null) return false; - try { - return valueOf(value) != null; - } - catch (IllegalArgumentException x) { - return false; - } - } - } - - public int segFileId; - public int cancerStudyId; - public ReferenceGenomeId referenceGenomeId; - public String description; - public String filename; -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberStatus.java b/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberStatus.java deleted file mode 100644 index f81f633dad9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CopyNumberStatus.java +++ /dev/null @@ -1,66 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * Class for copy number status - */ -public class CopyNumberStatus { - public static final int COPY_NUMBER_AMPLIFICATION = 2; - public static final int COPY_NUMBER_GAIN = 1; - public static final int NO_CHANGE = 0; - public static final int HEMIZYGOUS_DELETION = -1; - public static final int HOMOZYGOUS_DELETION = -2; - public static final int NO_DATA = -9999; - - public static int getCNAStatus(int entrezGeneId, String caseId, String valueStr) { - - try { - Double value = Double.valueOf(valueStr); - if (value < -2 || value > 2) { - throw new IllegalArgumentException("Can't handle CNA value of: " + value - + " Case ID: " + caseId + ", Entrez Gene ID: " + entrezGeneId); - } else { - if (value > 2) { - return COPY_NUMBER_AMPLIFICATION; - } else { - return value.intValue(); - } - } - } catch (NumberFormatException e) { - throw new IllegalArgumentException("Can't handle CNA value of: " + valueStr - + " Case ID: " + caseId + ", Entrez Gene ID: " + entrezGeneId); - } - - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/CosmicMutationFrequency.java b/core/src/main/java/org/mskcc/cbio/portal/model/CosmicMutationFrequency.java deleted file mode 100644 index d517defda2a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/CosmicMutationFrequency.java +++ /dev/null @@ -1,170 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * - * @author jgao - */ -public class CosmicMutationFrequency { - private String id; - private String chr; - private long startPosition; - private String referenceAllele; - private String tumorSeqAllele; - private String strand; - private String cds; - private long entrezGeneId; - private String aminoAcidChange; - private String keyword; - private int frequency; - - public CosmicMutationFrequency(String id, long entrezGeneId, String aminoAcidChange, - String keyword, int frequency) { - this.id = id; - this.entrezGeneId = entrezGeneId; - this.aminoAcidChange = aminoAcidChange; - this.keyword = keyword; - this.frequency = frequency; - } - - public String getId() { - return id; - } - - public void setId(String id) { - this.id = id; - } - - public long getEntrezGeneId() { - return entrezGeneId; - } - - public void setEntrezGeneId(long entrezGeneId) { - this.entrezGeneId = entrezGeneId; - } - - public String getAminoAcidChange() { - return aminoAcidChange; - } - - public void setAminoAcidChange(String aminoAcidChange) { - this.aminoAcidChange = aminoAcidChange; - } - - public String getKeyword() { - return keyword; - } - - public void setKeyword(String keyword) { - this.keyword = keyword; - } - - public int getFrequency() { - return frequency; - } - - public void setFrequency(int frequency) { - this.frequency = frequency; - } - - public String getChr() { - return chr; - } - - public void setChr(String chr) { - this.chr = chr; - } - - public long getStartPosition() { - return startPosition; - } - - public void setStartPosition(long startPosition) { - this.startPosition = startPosition; - } - - public String getReferenceAllele() { - return referenceAllele; - } - - public void setReferenceAllele(String referenceAllele) { - this.referenceAllele = referenceAllele; - } - - public String getTumorSeqAllele() { - return tumorSeqAllele; - } - - public void setTumorSeqAllele(String tumorSeqAllele) { - this.tumorSeqAllele = tumorSeqAllele; - } - - public String getStrand() { - return strand; - } - - public void setStrand(String strand) { - this.strand = strand; - } - - public String getCds() { - return cds; - } - - public void setCds(String cds) { - this.cds = cds; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 97 * hash + (this.id != null ? this.id.hashCode() : 0); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final CosmicMutationFrequency other = (CosmicMutationFrequency) obj; - if ((this.id == null) ? (other.id != null) : !this.id.equals(other.id)) { - return false; - } - return true; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/DownloadLink.java b/core/src/main/java/org/mskcc/cbio/portal/model/DownloadLink.java deleted file mode 100644 index cb72c120654..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/DownloadLink.java +++ /dev/null @@ -1,98 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; -import java.util.ArrayList; - -/** - * Encapsulates a Download Link. - */ -public class DownloadLink implements Serializable { - private GeneticProfile profile; - private ArrayList geneList; - private String caseIds; - private String content; - - /** - * Constructor. - * - * @param profile GeneticProfile Object. - * @param geneList ArrayList of Gene Symbols. - * @param caseIds Whitespace-delimited list of case Ids. - * @param content Content from the CGDS Server. - */ - public DownloadLink(GeneticProfile profile, ArrayList geneList, - String caseIds, String content) { - this.profile = profile; - this.geneList = geneList; - this.caseIds = caseIds; - this.content = content; - } - - /** - * Gets the Genetic Profile. - * - * @return GeneticProfile Object. - */ - public GeneticProfile getProfile() { - return profile; - } - - /** - * Gets the Gene List. - * - * @return ArrayList of Gene Symbols. - */ - public ArrayList getGeneList() { - return geneList; - } - - /** - * Gets the Case IDs. - * - * @return whitespace-delimited list of case IDs. - */ - public String getCaseIds() { - return caseIds; - } - - /** - * Gets the content returned by the CGDS Server. - * - * @return CGDS Content. - */ - public String getContent() { - return content; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Drug.java b/core/src/main/java/org/mskcc/cbio/portal/model/Drug.java deleted file mode 100644 index 13266080381..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Drug.java +++ /dev/null @@ -1,163 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -public class Drug { - private String id; - private String name; - private String description; - private String synonyms; - private String externalReference; - private String resource; - private boolean isApprovedFDA = false; - private boolean isCancerDrug = false; - private boolean isNutraceuitical = false; - private Integer numberOfClinicalTrials = -1; - private String ATCCode; - - public Drug() { - } - - public Drug(String id, - String name, - String description, - String synonyms, - String externalReference, - String resource, - String ATCCode, - boolean approvedFDA, - boolean cancerDrug, - boolean nutraceuitical, - Integer numberOfClinicalTrials) { - - this.id = id; - this.name = name; - this.description = description; - this.synonyms = synonyms; - this.externalReference = externalReference; - this.resource = resource; - this.isApprovedFDA = approvedFDA; - this.ATCCode = ATCCode; - this.isCancerDrug = cancerDrug; - this.isNutraceuitical = nutraceuitical; - this.numberOfClinicalTrials = numberOfClinicalTrials; - } - - public String getId() { - return id; - } - - public void setId(String id) { - this.id = id; - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public String getSynonyms() { - return synonyms; - } - - public void setSynonyms(String synonyms) { - this.synonyms = synonyms; - } - - public String getExternalReference() { - return externalReference; - } - - public void setExternalReference(String externalReference) { - this.externalReference = externalReference; - } - - public String getResource() { - return resource; - } - - public void setResource(String resource) { - this.resource = resource; - } - - public boolean isApprovedFDA() { - return isApprovedFDA; - } - - public void setApprovedFDA(boolean approvedFDA) { - isApprovedFDA = approvedFDA; - } - - public String getATCCode() { - return ATCCode; - } - - public void setATCCode(String ATCCode) { - this.ATCCode = ATCCode; - } - - public boolean isCancerDrug() { - return isCancerDrug; - } - - public void setCancerDrug(boolean cancerDrug) { - isCancerDrug = cancerDrug; - } - - public boolean isNutraceuitical() { - return isNutraceuitical; - } - - public void setNutraceuitical(boolean nutraceuitical) { - isNutraceuitical = nutraceuitical; - } - - public Integer getNumberOfClinicalTrials() { - return numberOfClinicalTrials; - } - - public void setNumberOfClinicalTrials(Integer numberOfClinicalTrials) { - this.numberOfClinicalTrials = numberOfClinicalTrials; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/DrugInteraction.java b/core/src/main/java/org/mskcc/cbio/portal/model/DrugInteraction.java deleted file mode 100644 index 9c0b8756906..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/DrugInteraction.java +++ /dev/null @@ -1,108 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -public class DrugInteraction { - private String drug; - private long targetGene; - private String interactionType; - private String dataSource; - private String experimentTypes; - private String pubMedIDs; - - public DrugInteraction() { - } - - public DrugInteraction(String drug, - Integer targetGene, - String interactionType, - String dataSource, - String experimentTypes, - String pubMedIDs) { - - this.drug = drug; - this.targetGene = targetGene; - this.interactionType = interactionType; - this.dataSource = dataSource; - this.experimentTypes = experimentTypes; - this.pubMedIDs = pubMedIDs; - } - - public String getDrug() { - return drug; - } - - public void setDrug(String drug) { - this.drug = drug; - } - - public long getTargetGene() { - return targetGene; - } - - public void setTargetGene(long targetGene) { - this.targetGene = targetGene; - } - - public String getInteractionType() { - return interactionType; - } - - public void setInteractionType(String interactionType) { - this.interactionType = interactionType; - } - - public String getDataSource() { - return dataSource; - } - - public void setDataSource(String dataSource) { - this.dataSource = dataSource; - } - - public String getExperimentTypes() { - return experimentTypes; - } - - public void setExperimentTypes(String experimentTypes) { - this.experimentTypes = experimentTypes; - } - - public String getPubMedIDs() { - return pubMedIDs; - } - - public void setPubMedIDs(String pubMedIDs) { - this.pubMedIDs = pubMedIDs; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ExtendedMutation.java b/core/src/main/java/org/mskcc/cbio/portal/model/ExtendedMutation.java deleted file mode 100644 index 21c276f225f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ExtendedMutation.java +++ /dev/null @@ -1,891 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import com.fasterxml.jackson.annotation.JsonIgnore; - -import org.apache.commons.lang3.builder.ToStringBuilder; -import org.mskcc.cbio.maf.MafUtil; - -/** - * Encapsules Details regarding a Single Mutation. - * - * @author Ethan Cerami. - */ -public final class ExtendedMutation -{ - - public final static class MutationEvent { - private long mutationEventId; - private CanonicalGene gene; - private String chr; - private long startPosition; - private long endPosition; - private String proteinChange; // amino acid change - private String mutationType; // variant classification - private String keyword; - private String ncbiBuild; - private String strand; - private String variantType; - private String referenceAllele; - private String tumorSeqAllele; - private String dbSnpRs; - private String dbSnpValStatus; - private String refseqMrnaId; - private String uniprotAccession; - private String codonChange; - private int proteinPosStart; - private int proteinPosEnd; - private boolean canonicalTranscript; - - public long getMutationEventId() { - return mutationEventId; - } - - public void setMutationEventId(long mutationEventId) { - this.mutationEventId = mutationEventId; - } - - @JsonIgnore - public CanonicalGene getGene() { - return gene; - } - - @JsonIgnore - public void setGene(CanonicalGene gene) { - this.gene = gene; - } - - public String getChr() { - return chr; - } - - public void setChr(String chr) { - this.chr = chr; - } - - public long getStartPosition() { - return startPosition; - } - - public void setStartPosition(long startPosition) { - this.startPosition = startPosition; - } - - public long getEndPosition() { - return endPosition; - } - - public void setEndPosition(long endPosition) { - this.endPosition = endPosition; - } - - public String getProteinChange() { - return proteinChange; - } - - public void setProteinChange(String proteinChange) { - this.proteinChange = proteinChange; - } - - public String getMutationType() { - return mutationType; - } - - public void setMutationType(String mutationType) { - this.mutationType = mutationType; - } - - public String getKeyword() { - return keyword; - } - - public void setKeyword(String keyword) { - this.keyword = keyword; - } - - public String getNcbiBuild() { - return ncbiBuild; - } - - public void setNcbiBuild(String ncbiBuild) { - this.ncbiBuild = ncbiBuild; - } - - public String getStrand() { - return strand; - } - - public void setStrand(String strand) { - this.strand = strand; - } - - public String getVariantType() { - return variantType; - } - - public void setVariantType(String variantType) { - this.variantType = variantType; - } - - public String getReferenceAllele() { - return referenceAllele; - } - - public void setReferenceAllele(String referenceAllele) { - this.referenceAllele = referenceAllele; - } - - public String getTumorSeqAllele() { - return tumorSeqAllele; - } - - public void setTumorSeqAllele(String tumorSeqAllele) { - this.tumorSeqAllele = tumorSeqAllele; - } - - public String getDbSnpRs() { - return dbSnpRs; - } - - public void setDbSnpRs(String dbSnpRs) { - this.dbSnpRs = dbSnpRs; - } - - public String getDbSnpValStatus() { - return dbSnpValStatus; - } - - public void setDbSnpValStatus(String dbSnpValStatus) { - this.dbSnpValStatus = dbSnpValStatus; - } - - public String getRefseqMrnaId() { - return refseqMrnaId; - } - - public void setRefseqMrnaId(String refseqMrnaId) { - this.refseqMrnaId = refseqMrnaId; - } - - public String getUniprotAccession() { - return uniprotAccession; - } - - public void setUniprotAccession(String uniprotAccession) { - this.uniprotAccession = uniprotAccession; - } - - public String getCodonChange() { - return codonChange; - } - - public void setCodonChange(String codonChange) { - this.codonChange = codonChange; - } - - public int getProteinPosStart() { - return proteinPosStart; - } - - public void setProteinPosStart(int proteinPosStart) { - this.proteinPosStart = proteinPosStart; - } - - public int getProteinPosEnd() { - return proteinPosEnd; - } - - public void setProteinPosEnd(int proteinPosEnd) { - this.proteinPosEnd = proteinPosEnd; - } - - public boolean isCanonicalTranscript() { - return canonicalTranscript; - } - - public void setCanonicalTranscript(boolean canonicalTranscript) { - this.canonicalTranscript = canonicalTranscript; - } - - // The fields used here have to be the same as in sql file. - // The comparison has to be case insensitive, since this is how MYSQL will - // look at the values for the UQ constraint in DB. - @Override - public int hashCode() { - int hash = 3; - hash = 37 * hash + (this.gene != null ? this.gene.hashCode() : 0); - hash = 37 * hash + (this.chr != null ? this.chr.toUpperCase().hashCode() : 0); - hash = 37 * hash + (int) (this.startPosition ^ (this.startPosition >>> 32)); - hash = 37 * hash + (int) (this.endPosition ^ (this.endPosition >>> 32)); - hash = 37 * hash + (this.proteinChange != null ? this.proteinChange.toUpperCase().hashCode() : 0); - hash = 37 * hash + (this.tumorSeqAllele != null ? this.tumorSeqAllele.toUpperCase().hashCode() : 0); - hash = 37 * hash + (this.mutationType != null ? this.mutationType.toUpperCase().hashCode() : 0); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final MutationEvent other = (MutationEvent) obj; - if (this.gene != other.gene && (this.gene == null || !this.gene.equals(other.gene))) { - return false; - } - if ((this.chr == null) ? (other.chr != null) : !this.chr.equalsIgnoreCase(other.chr)) { - return false; - } - if (this.startPosition != other.startPosition) { - return false; - } - if (this.endPosition != other.endPosition) { - return false; - } - if ((this.proteinChange == null) ? (other.proteinChange != null) : !this.proteinChange.equalsIgnoreCase(other.proteinChange)) { - return false; - } - if ((this.tumorSeqAllele == null) ? (other.tumorSeqAllele != null) : !this.tumorSeqAllele.equalsIgnoreCase(other.tumorSeqAllele)) { - return false; - } - if ((this.mutationType == null) ? (other.mutationType != null) : !this.mutationType.equalsIgnoreCase(other.mutationType)) { - return false; - } - return true; - } - } - private static final String GERMLINE = "germline"; - - private MutationEvent event; - private int geneticProfileId; - private int sampleId; - private String sequencingCenter; - private String sequencer; - private String mutationStatus; - private String validationStatus; - private String tumorSeqAllele1; - private String tumorSeqAllele2; - private String matchedNormSampleBarcode; - private String matchNormSeqAllele1; - private String matchNormSeqAllele2; - private String tumorValidationAllele1; - private String tumorValidationAllele2; - private String matchNormValidationAllele1; - private String matchNormValidationAllele2; - private String verificationStatus; - private String sequencingPhase; - private String sequenceSource; - private String validationMethod; - private String score; - private String bamFile; - private String aminoAcidChange; - private Integer tumorAltCount; - private Integer tumorRefCount; - private Integer normalAltCount; - private Integer normalRefCount; - private String driverFilter; - private String driverFilterAnn; - private String driverTiersFilter; - private String driverTiersFilterAnn; - private String annotationJson; - - public ExtendedMutation() { - this(new MutationEvent()); - } - - public ExtendedMutation(MutationEvent event) { - this.event = event; - } - - /** - * Constructor. - * - * @param gene Gene Object. - * @param validationStatus Validation Status, e.g. Valid or Unknown. - * @param mutationStatus Mutation Status, e.g. Somatic or Germline. - * @param mutationType Mutation Type, e.g. Nonsense_Mutation, Frame_Shift_Del, etc. - */ - public ExtendedMutation(CanonicalGene gene, String validationStatus, String mutationStatus, - String mutationType) { - this(); - this.setGene(gene); - this.mutationStatus = mutationStatus; - this.validationStatus = validationStatus; - this.setMutationType(mutationType); - } - - /** - * Sets the Sequencing Center which performed the sequencing. - * @param center sequencing center, e.g. WashU, Broad, etc. - */ - public void setSequencingCenter(String center) { - this.sequencingCenter = center; - } - - /** - * Gets the Sequencing Center which performed the sequencing. - * @return sequencing center, e.g. WashU, Broad, etc. - */ - public String getSequencingCenter() { - return sequencingCenter; - } - - /** - * Gets the Mutations Status, e.g. Somatic or Germline. - * @return mutation status, e.g. Somatic or Germline. - */ - public String getMutationStatus() { - return mutationStatus; - } - - @JsonIgnore - public boolean isGermlineMutation() { - return getMutationStatus() != null && getMutationStatus().equalsIgnoreCase(GERMLINE); - } - - /** - * Sets the Mutation Status, e.g. Somatic or Germline. - * @param mutationStatus mutation status, e.g. Somatic or Germline. - */ - public void setMutationStatus(String mutationStatus) { - this.mutationStatus = mutationStatus; - } - - /** - * Sets the Validation Status, e.g. Valid or Unknown. - * @param validationStatus validation status, e.g. Valid or Unknown. - */ - public void setValidationStatus(String validationStatus) { - this.validationStatus = validationStatus; - } - - /** - * Gets the Validation Status, e.g. Valid or Unknown. - * @return validation status, e.g. Valid or Unknown. - */ - public String getValidationStatus() { - return validationStatus; - } - - /** - * Sets the Mutation Type, e.g. Nonsense_Mutation, Frame_Shift_Del, etc. - * @param mutationType mutation type, e.g. Nonsense_Mutation, Frame_Shift_Del, etc. - */ - public void setMutationType(String mutationType) { - event.setMutationType(mutationType); - } - - /** - * Gets the Mutation Type, e.g. Nonsense_Mutation, Frame_Shift_Del, etc. - * @return mutation type, e.g. Nonsense_Mutation, Frame_Shift_Del, etc. - */ - public String getMutationType() { - return event.getMutationType(); - } - - public int getGeneticProfileId() { - return geneticProfileId; - } - - public void setGeneticProfileId(int geneticProfileId) { - this.geneticProfileId = geneticProfileId; - } - - public int getSampleId() { - return sampleId; - } - - public void setSampleId(int sampleId) { - this.sampleId = sampleId; - } - - public String getChr() { - return event.getChr(); - } - - public void setChr(String chr) { - event.setChr(chr); - } - - public long getStartPosition() { - return event.getStartPosition(); - } - - public void setStartPosition(long startPosition) { - event.setStartPosition(startPosition); - } - - public long getEndPosition() { - return event.getEndPosition(); - } - - public void setEndPosition(long endPosition) { - event.setEndPosition(endPosition); - } - - public String getProteinChange() { - return event.getProteinChange(); - } - - public void setProteinChange(String proteinChange) { - event.setProteinChange(proteinChange); - } - - public String getAminoAcidChange() - { - return aminoAcidChange; - } - - public void setAminoAcidChange(String aminoAcidChange) - { - this.aminoAcidChange = aminoAcidChange; - } - - public String getSequencer() { - return sequencer; - } - - public void setSequencer(String sequencer) { - this.sequencer = sequencer; - } - - public String getNcbiBuild() { - return event.getNcbiBuild(); - } - - public void setNcbiBuild(String ncbiBuild) { - event.setNcbiBuild(ncbiBuild); - } - - public String getStrand() { - return event.getStrand(); - } - - public void setStrand(String strand) { - event.setStrand(strand); - } - - public String getVariantType() { - return event.getVariantType(); - } - - public void setVariantType(String variantType) { - event.setVariantType(variantType); - } - - public String getReferenceAllele() { - return event.getReferenceAllele(); - } - - public void setReferenceAllele(String referenceAllele) { - event.setReferenceAllele(referenceAllele); - } - - public String getTumorSeqAllele() { - return event.getTumorSeqAllele(); - } - - public void setTumorSeqAllele(String tumorSeqAllele) { - event.setTumorSeqAllele(tumorSeqAllele); - } - - public String getTumorSeqAllele1() { - return tumorSeqAllele1; - } - - public void setTumorSeqAllele1(String tumorSeqAllele1) { - this.tumorSeqAllele1 = tumorSeqAllele1; - } - - public String getTumorSeqAllele2() { - return tumorSeqAllele2; - } - - public void setTumorSeqAllele2(String tumorSeqAllele2) { - this.tumorSeqAllele2 = tumorSeqAllele2; - } - - - - /** - * Set alleles. - * For variant allele: one of the tumor sequence alleles is selected. - * @see MafUtil#resolveTumorSeqAllele(String referenceAllele, String tumorSeqAllele1, String tumorSeqAllele2) - * - * @param varAllele1 the first variant allele - * @param varAllele2 the second variant allele - * @param refAllele the reference allele - * @return tumor sequence allele - */ - public void setAllele(String varAllele1, String varAllele2, String refAllele) - { - this.setReferenceAllele(refAllele); - this.setTumorSeqAllele1(varAllele1); - this.setTumorSeqAllele2(varAllele2); - this.setTumorSeqAllele(MafUtil.resolveTumorSeqAllele(refAllele, varAllele1, varAllele2)); - } - - public String getDbSnpRs() { - return event.getDbSnpRs(); - } - - public void setDbSnpRs(String dbSnpRs) { - event.setDbSnpRs(dbSnpRs); - } - - public String getDbSnpValStatus() { - return event.getDbSnpValStatus(); - } - - public void setDbSnpValStatus(String dbSnpValStatus) { - event.setDbSnpValStatus(dbSnpValStatus); - } - - public String getMatchedNormSampleBarcode() { - return matchedNormSampleBarcode; - } - - public void setMatchedNormSampleBarcode(String matchedNormSampleBarcode) { - this.matchedNormSampleBarcode = matchedNormSampleBarcode; - } - - public String getMatchNormSeqAllele1() { - return matchNormSeqAllele1; - } - - public void setMatchNormSeqAllele1(String matchNormSeqAllele1) { - this.matchNormSeqAllele1 = matchNormSeqAllele1; - } - - public String getMatchNormSeqAllele2() { - return matchNormSeqAllele2; - } - - public void setMatchNormSeqAllele2(String matchNormSeqAllele2) { - this.matchNormSeqAllele2 = matchNormSeqAllele2; - } - - public String getTumorValidationAllele1() { - return tumorValidationAllele1; - } - - public void setTumorValidationAllele1(String tumorValidationAllele1) { - this.tumorValidationAllele1 = tumorValidationAllele1; - } - - public String getTumorValidationAllele2() { - return tumorValidationAllele2; - } - - public void setTumorValidationAllele2(String tumorValidationAllele2) { - this.tumorValidationAllele2 = tumorValidationAllele2; - } - - public String getMatchNormValidationAllele1() { - return matchNormValidationAllele1; - } - - public void setMatchNormValidationAllele1(String matchNormValidationAllele1) { - this.matchNormValidationAllele1 = matchNormValidationAllele1; - } - - public String getMatchNormValidationAllele2() { - return matchNormValidationAllele2; - } - - public void setMatchNormValidationAllele2(String matchNormValidationAllele2) { - this.matchNormValidationAllele2 = matchNormValidationAllele2; - } - - public String getVerificationStatus() { - return verificationStatus; - } - - public void setVerificationStatus(String verificationStatus) { - this.verificationStatus = verificationStatus; - } - - public String getSequencingPhase() { - return sequencingPhase; - } - - public void setSequencingPhase(String sequencingPhase) { - this.sequencingPhase = sequencingPhase; - } - - public String getSequenceSource() { - return sequenceSource; - } - - public void setSequenceSource(String sequenceSource) { - this.sequenceSource = sequenceSource; - } - - public String getValidationMethod() { - return validationMethod; - } - - public void setValidationMethod(String validationMethod) { - this.validationMethod = validationMethod; - } - - public String getScore() { - return score; - } - - public void setScore(String score) { - this.score = score; - } - - public String getBamFile() { - return bamFile; - } - - public void setBamFile(String bamFile) { - this.bamFile = bamFile; - } - - public Integer getTumorAltCount() { - return tumorAltCount; - } - - public void setTumorAltCount(Integer tumorAltCount) { - this.tumorAltCount = tumorAltCount; - } - - public Integer getTumorRefCount() { - return tumorRefCount; - } - - public void setTumorRefCount(Integer tumorRefCount) { - this.tumorRefCount = tumorRefCount; - } - - public Integer getNormalAltCount() { - return normalAltCount; - } - - public void setNormalAltCount(Integer normalAltCount) { - this.normalAltCount = normalAltCount; - } - - public Integer getNormalRefCount() { - return normalRefCount; - } - - public void setNormalRefCount(Integer normalRefCount) { - this.normalRefCount = normalRefCount; - } - - public String getRefseqMrnaId() - { - return event.getRefseqMrnaId(); - } - - public void setRefseqMrnaId(String refseqMrnaId) - { - event.setRefseqMrnaId(refseqMrnaId); - } - - public String getUniprotAccession() - { - return event.getUniprotAccession(); - } - - public void setUniprotAccession(String uniprotAccession) - { - event.setUniprotAccession(uniprotAccession); - } - - public String getCodonChange() - { - return event.getCodonChange(); - } - - public void setCodonChange(String codonChange) - { - event.setCodonChange(codonChange); - } - - public int getProteinPosStart() - { - return event.getProteinPosStart(); - } - - public void setProteinPosStart(int proteinPosStart) - { - event.setProteinPosStart(proteinPosStart); - } - - public int getProteinPosEnd() - { - return event.getProteinPosEnd(); - } - - public void setProteinPosEnd(int proteinPosEnd) - { - event.setProteinPosEnd(proteinPosEnd); - } - - public boolean isCanonicalTranscript() - { - return event.isCanonicalTranscript(); - } - - public void setCanonicalTranscript(boolean canonicalTranscript) - { - event.setCanonicalTranscript(canonicalTranscript); - } - - @JsonIgnore - public void setGene(CanonicalGene gene) { - event.setGene(gene); - } - - @JsonIgnore - public CanonicalGene getGene() { - return event.getGene(); - } - - @JsonIgnore - public long getEntrezGeneId() { - return event.getGene().getEntrezGeneId(); - } - - @JsonIgnore - public String getGeneSymbol() { - return event.getGene().getHugoGeneSymbolAllCaps(); - } - - public long getMutationEventId() { - return event.getMutationEventId(); - } - - public void setMutationEventId(long mutationEventId) { - event.setMutationEventId(mutationEventId); - } - - public String getKeyword() { - return event.getKeyword(); - } - - public void setKeyword(String keyword) { - event.setKeyword(keyword); - } - - public MutationEvent getEvent() { - return event; - } - - public void setEvent(MutationEvent event) { - this.event = event; - } - - public void setDriverFilter(String driverFilter) { - this.driverFilter = driverFilter; - } - - public String getDriverFilter() { - return driverFilter; - } - - public void setDriverFilterAnn(String driverFilterAnn) { - this.driverFilterAnn = driverFilterAnn; - } - - public String getDriverFilterAnn() { - return driverFilterAnn; - } - - public void setDriverTiersFilter(String driverTiersFilter) { - this.driverTiersFilter = driverTiersFilter; - } - - public String getDriverTiersFilter() { - return driverTiersFilter; - } - - public void setDriverTiersFilterAnn(String driverTiersFilterAnn) { - this.driverTiersFilterAnn = driverTiersFilterAnn; - } - - public String getDriverTiersFilterAnn() { - return driverTiersFilterAnn; - } - - public String getAnnotationJson() { - return annotationJson; - } - - public void setAnnotationJson(String annotationJson) { - this.annotationJson = annotationJson; - } - - @Override - public String toString() { - return ToStringBuilder.reflectionToString(this); - } - - @Override - public int hashCode() { - int hash = 7; - hash = 79 * hash + (this.event != null ? this.event.hashCode() : 0); - hash = 79 * hash + this.geneticProfileId; - hash = 79 * hash; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final ExtendedMutation other = (ExtendedMutation) obj; - if (this.event != other.event && (this.event == null || !this.event.equals(other.event))) { - return false; - } - if (this.geneticProfileId != other.geneticProfileId) { - return false; - } - if (this.sampleId != other.sampleId) { - return false; - } - return true; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ExtendedMutationMap.java b/core/src/main/java/org/mskcc/cbio/portal/model/ExtendedMutationMap.java deleted file mode 100644 index 04105ecf3f1..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ExtendedMutationMap.java +++ /dev/null @@ -1,113 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.ArrayList; -import java.util.HashMap; - -/** - * A HashMap of ExtendedMutation Objects, indexed by Gene and Sample ID. - * - * @author Ethan Cerami. - */ -public class ExtendedMutationMap { - private static final String DELIMITER = ":"; - private HashMap > mutationCaseMap = - new HashMap>(); - private HashMap > mutationMap = - new HashMap>(); - private ArrayList sampleList; - - public ExtendedMutationMap (ArrayList mutationList, - ArrayList sampleList) { - this.sampleList = sampleList; - for (ExtendedMutation mutation: mutationList) { - String key = getKey(mutation.getGeneSymbol(), mutation.getSampleId()); - appendToMap(key, mutation, mutationCaseMap); - appendToMap(mutation.getGeneSymbol(), mutation, mutationMap); - } - } - - /** - * Gets all Extended Mutations, associated with the specified Gene / Sample ID combination. - * @param geneSymbol Gene Symbol. - * @param sampleId Case ID. - * @return ArrayList of ExtendedMutation Objects. - */ - public ArrayList getExtendedMutations(String geneSymbol, Integer sampleId) { - String key = getKey(geneSymbol.toUpperCase(), sampleId); - return mutationCaseMap.get(key); - } - - /** - * Gets all Extended Mutations, associated with the specified Gene. - * @param geneSymbol Gene Symbol. - * @return ArrayList of ExtendedMutation Objects. - */ - public ArrayList getExtendedMutations(String geneSymbol) { - return mutationMap.get(geneSymbol.toUpperCase()); - } - - public int getNumExtendedMutations(String geneSymbol) { - ArrayList mutationList = mutationMap.get(geneSymbol.toUpperCase()); - if (mutationList == null) { - return 0; - } else { - return mutationList.size(); - } - } - - public int getNumGenesWithExtendedMutations() { - return mutationMap.keySet().size(); - } - - public ArrayList getSampleList() { - return sampleList; - } - - private void appendToMap(String key, ExtendedMutation mutation, - HashMap > map) { - if (map.containsKey(key)) { - ArrayList currentList = map.get(key); - currentList.add(mutation); - } else { - ArrayList currentList = new ArrayList (); - currentList.add(mutation); - map.put(key, currentList); - } - } - - private String getKey(String geneSymbol, Integer sampleId) { - return geneSymbol + DELIMITER + sampleId; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Gene.java b/core/src/main/java/org/mskcc/cbio/portal/model/Gene.java deleted file mode 100644 index eeb89aa1d58..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Gene.java +++ /dev/null @@ -1,41 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * Encapsulate a Gene. - */ -public abstract class Gene { - - public abstract String getStandardSymbol(); -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneCounterPrefs.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneCounterPrefs.java deleted file mode 100644 index 1fc8eb98bc7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneCounterPrefs.java +++ /dev/null @@ -1,93 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -// TODO: I think this can be deleted -public class GeneCounterPrefs { - - private boolean mrnaUp; - private boolean mrnaDown; - private boolean ignoreMrna; - private boolean cnaUp; - private boolean cnaDown; - private boolean ignoreCna; - - - public boolean mrnaUp() { - return mrnaUp; - } - - public void setMrnaUp(boolean flag) { - this.mrnaUp = flag; - } - - public boolean mrnaDown() { - return mrnaDown; - } - - public void setMrnaDown(boolean flag) { - this.mrnaDown = flag; - } - - public boolean ignoreMrna() { - return ignoreMrna; - } - - public void setIgnoreMrna(boolean flag) { - this.ignoreMrna = flag; - } - - public boolean cnaUp() { - return cnaUp; - } - - public void setCnaUp(boolean flag) { - this.cnaUp = flag; - } - - public boolean cnaDown() { - return cnaDown; - } - - public void setCnaDown(boolean flag) { - this.cnaDown = flag; - } - - public boolean ignoreCna() { - return ignoreCna; - } - - public void setIgnoreCna(boolean flag) { - this.ignoreCna = flag; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GenePanel.java b/core/src/main/java/org/mskcc/cbio/portal/model/GenePanel.java deleted file mode 100644 index ab49fd4c9a2..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GenePanel.java +++ /dev/null @@ -1,85 +0,0 @@ -/* - * Copyright (c) 2016 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ -package org.mskcc.cbio.portal.model; - -/** - * - * @author heinsz - */ - -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.io.Serializable; -import java.util.Set; - -public class GenePanel implements Serializable { - - private Integer internalId; - private String stableId; - private String description; - private Set genes; - - public GenePanel() {} - - public Integer getInternalId() { - return internalId; - } - - public void setInternalId(Integer internalId) { - this.internalId = internalId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public Set getGenes() { - return genes; - } - - public void setGenes(Set genes) { - this.genes = genes; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneWithScore.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneWithScore.java deleted file mode 100644 index 18b363696fc..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneWithScore.java +++ /dev/null @@ -1,137 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneWithSpec; - -/** - * Encapsulates a Gene with a Score. - * Score is used to rank genes. - */ -public class GeneWithScore { - private String gene; - private int entrezGeneId; - private double score; - // apg: was: private GeneCounterPrefs counterPrefs; - private GeneWithSpec aGeneWithSpec; - - /** - * Constructor. - */ - public GeneWithScore() { - // apg: was: counterPrefs = new GeneCounterPrefs(); - // TODO: decide if this constructor is needed: aGeneWithSpec = new GeneWithSpec(); - } - - /** - * Gets the Gene Symbol. - * - * @return gene symbol. - */ - public String getGene() { - return gene; - } - - /** - * Sets the Gene Symbol. - * - * @param gene gene symbol. - */ - public void setGene(String gene) { - this.gene = gene; - } - - /** - * Gets Entrez Gene Id. - * - * @return Entrez Gene Id. - */ - public int getEntrezGeneId() { - return entrezGeneId; - } - - /** - * Sets Entrez Gene Id. - * - * @param entrezGeneId Entrez Gene Id; - */ - public void setEntrezGeneId(int entrezGeneId) { - this.entrezGeneId = entrezGeneId; - } - - /** - * Gets the score. - * - * @return gene score. - */ - public double getScore() { - return score; - } - - /** - * Sets the gene score. - * - * @param score gene score. - */ - public void setScore(double score) { - this.score = score; - } - - /** - * Gets the Counter Prefs. - * @return Counter Prefs. - */ - /* apg: was - public GeneCounterPrefs getCounterPrefs() { - return counterPrefs; - } - */ - public GeneWithSpec getaGeneWithSpec() { - return aGeneWithSpec; - } - - - /** - * Sets the Counter Prefs; - * @param counterPrefs Counter Prefs. - */ - /* apg: was - public void setCounterPrefs(GeneCounterPrefs counterPrefs) { - this.counterPrefs = counterPrefs; - } - */ - public void setaGeneWithSpec(GeneWithSpec aGeneWithSpec) { - this.aGeneWithSpec = aGeneWithSpec; - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Geneset.java b/core/src/main/java/org/mskcc/cbio/portal/model/Geneset.java deleted file mode 100644 index 6b5bbe37daa..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Geneset.java +++ /dev/null @@ -1,151 +0,0 @@ -/* - * Copyright (c) 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; -import java.util.Set; - -/** - * @author ochoaa - * @author Sander Tan - */ - -public class Geneset implements Serializable { - - private int id; - private int geneticEntityId; - private String externalId; - private String name; - private String description; - private String refLink; - private Set genesetGeneIds; - - /** - * @return the id - */ - public int getId() { - return id; - } - - /** - * @param id the id to set - */ - public void setId(Integer id) { - this.id = id; - } - - /** - * @return the geneticEntityId - */ - public int getGeneticEntityId() { - return geneticEntityId; - } - - /** - * @param geneticEntityId the geneticEntityId to set - */ - public void setGeneticEntityId(Integer geneticEntityId) { - this.geneticEntityId = geneticEntityId; - } - - /** - * @return the externalId - */ - public String getExternalId() { - return externalId; - } - - /** - * @param externalId the externalId to set - */ - public void setExternalId(String externalId) { - this.externalId = externalId; - } - - /** - * @return the name - */ - public String getName() { - return name; - } - - /** - * @param name the name to set - */ - public void setName(String name) { - this.name = name; - } - - /** - * @return the description - */ - public String getDescription() { - return description; - } - - /** - * @param description the description to set - */ - public void setDescription(String description) { - this.description = description; - } - - /** - * @return the refLink - */ - public String getRefLink() { - return refLink; - } - - /** - * @param refLink the refLink to set - */ - public void setRefLink(String refLink) { - this.refLink = refLink; - } - - /** - * @return the genesetGenes - */ - public Set getGenesetGeneIds() { - return genesetGeneIds; - } - - /** - * @param genesetGenes the genesetGenes to set - */ - public void setGenesetGenes(Set genesetGeneIds) { - this.genesetGeneIds = genesetGeneIds; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GenesetHierarchy.java b/core/src/main/java/org/mskcc/cbio/portal/model/GenesetHierarchy.java deleted file mode 100644 index 71a0d98beca..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GenesetHierarchy.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; - -public class GenesetHierarchy implements Serializable { - - private int nodeId; - private String nodeName; - private int parentId; - - public GenesetHierarchy() { - } - - public int getNodeId() { - return nodeId; - } - - public void setNodeId(int nodeId) { - this.nodeId = nodeId; - } - - public String getNodeName() { - return nodeName; - } - - public void setNodeName(String nodeName) { - this.nodeName = nodeName; - } - - public int getParentId() { - return parentId; - } - - public void setParentId(int parentId) { - this.parentId = parentId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GenesetHierarchyLeaf.java b/core/src/main/java/org/mskcc/cbio/portal/model/GenesetHierarchyLeaf.java deleted file mode 100644 index 065a9268566..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GenesetHierarchyLeaf.java +++ /dev/null @@ -1,53 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; - -public class GenesetHierarchyLeaf implements Serializable { - - private int nodeId; - private int genesetId; - - public void setNodeId(int nodeId) { - this.nodeId = nodeId; - } - - public int getNodeId() { - return nodeId; - } - - public void setGenesetId(int genesetId) { - this.genesetId = genesetId; - } - public int getGenesetId() { - return genesetId; - } -} - - diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticAlterationType.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneticAlterationType.java deleted file mode 100644 index eb650336eac..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticAlterationType.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -// Copied to org.cbioportal.model.MolecularProfile.GeneticAlterationType, if you alter this, -// don't forget to change the other one too -public enum GeneticAlterationType { - MUTATION_EXTENDED, - // uncalled mutations (mskcc internal) for showing read counts even if - // mutation wasn't called - MUTATION_UNCALLED, - STRUCTURAL_VARIANT, - COPY_NUMBER_ALTERATION, - MICRO_RNA_EXPRESSION, - MRNA_EXPRESSION, - MRNA_EXPRESSION_NORMALS, - RNA_EXPRESSION, - METHYLATION, - METHYLATION_BINARY, - PHOSPHORYLATION, - PROTEIN_LEVEL, - PROTEIN_ARRAY_PROTEIN_LEVEL, - PROTEIN_ARRAY_PHOSPHORYLATION, - GENESET_SCORE, - GENERIC_ASSAY -}; diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEvent.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEvent.java deleted file mode 100644 index 0bf2fbaa88a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEvent.java +++ /dev/null @@ -1,151 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.model.GeneticEventImpl.*; - -/** - * Interface for Encapsulating Information Regarding One Gene in One Sample. - * - * @author Ethan Cerami, Arthur Goldberg. - */ -public interface GeneticEvent { - - /** - * Is the Gene Amplified at the Copy Number Level? - * - * @return true or false. - */ - public boolean isCnaAmplified(); - - /** - * Is the Gene Homozygously Deleted at the Copy Number Level? - * - * @return true or false. - */ - public boolean isCnaHomozygouslyDeleted(); - - /** - * Is the Gene Heterozgously Deleted at the Copy Number Level? - * - * @return true or false. - */ - public boolean isCnaHeterozygousDeleted(); - - /** - * Is the Gene mRNA upregulated? - * - * @return true or false. - */ - public boolean isMRNAUpRegulated(); - - /** - * Is the Gene mRNA down-regulated? - * - * @return true or false. - */ - public boolean isMRNADownRegulated(); - - /** - * Is the Gene RPPA upregulated? - * - * @return true or false. - */ - public boolean isRPPAUpRegulated(); - - /** - * Is the Gene RPPA down-regulated? - * - * @return true or false. - */ - public boolean isRPPADownRegulated(); - - /** - * Is gene mutated. - * - * @return true or false. - */ - public boolean isMutated(); - - /** - * Gets the Gene. - * @return Gene Symbol. - */ - public String getGene(); - - /** - * Gets the Case ID. - * @return Case ID. - */ - public String caseCaseId(); - - /** - * Gets the CNA Value. - * - * @return cna Value. - */ - public CNA getCnaValue(); - - /** - * Gets the MRNA Value. - * - * @return mRNA Value. - */ - public MRNA getMrnaValue(); - - /** - * Gets the RPPA Value. - * - * @return RPPA Value. - */ - public RPPA getRPPAValue(); - - /** - * Gets the mutations Value. - * - * @return mutations Value. - */ - public mutations getMutationValue(); - - /** - * Gets the mutation type (amino acid change). - * - * @return mutation Type. - */ - public String getMutationType(); - - /** - * Set the event's comparator. - */ - public void setGeneticEventComparator( GeneticEventComparator geneticEventComparator ); -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEventComparator.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEventComparator.java deleted file mode 100644 index c5e01e8c66d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEventComparator.java +++ /dev/null @@ -1,298 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.ArrayList; -import java.util.Comparator; -import java.util.EnumSet; -import java.util.HashMap; - -import org.mskcc.cbio.portal.model.GeneticEventImpl.CNA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.MRNA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.RPPA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.mutations; - -/** - * Provides configurable comparison and equals of GeneticEventImpls. - * @author arthur goldberg - */ -public class GeneticEventComparator implements Comparator{ - - private ArrayList> cnaSortOrder = new ArrayList>(); - private ArrayList> mRnaSortOrder = new ArrayList>(); - private ArrayList> rppaSortOrder = new ArrayList>(); - private ArrayList> mutationsSortOrder = new ArrayList>(); - - private HashMap cnaSortOrderHash = new HashMap(); // load this from cnaSortOrder - private HashMap mrnaSortOrderHash = new HashMap(); // load this from mRnaSortOrder - private HashMap rppaSortOrderHash = new HashMap(); // load this from mRnaSortOrder - private HashMap mutationsSortOrderHash = - new HashMap(); // load this from mutationsSortOrder - - /* - * default sort order - */ - public GeneticEventComparator( ){ - defaultSortOrder(); - } - - public GeneticEventComparator( ArrayList> CNAsortOrder, - ArrayList> MRNAsortOrder, - ArrayList> RPPAsortOrder, - ArrayList> mutationsSortOrder ){ - this.cnaSortOrder = CNAsortOrder; - this.mRnaSortOrder = MRNAsortOrder; - this.rppaSortOrder = RPPAsortOrder; - this.mutationsSortOrder = mutationsSortOrder; - initSortOrder(); - } - - private void defaultSortOrder(){ - //System.out.println( "defaultSortOrder: " ); - int val = 1; - // all CNAs - for (CNA aCNA : CNA.values()){ - //System.out.println( aCNA + ": " + val ); - cnaSortOrderHash.put(aCNA, Integer.valueOf( val++ ) ); - } - - // all MRNAs - val = 1; - for (MRNA aMRNA : MRNA.values()){ - mrnaSortOrderHash.put(aMRNA, Integer.valueOf( val++ ) ); - } - - // all RPPAs - val = 1; - for (RPPA aRPPA : RPPA.values()){ - rppaSortOrderHash.put(aRPPA, Integer.valueOf( val++ ) ); - } - - // all mutations - val = 1; - for (mutations aMutations : mutations.values()){ - mutationsSortOrderHash.put(aMutations, Integer.valueOf( val++ ) ); - } - } - - // default sort orders are useful for calling the constructor - public static ArrayList> defaultCNASortOrder() { - ArrayList> CNAsortOrder = new ArrayList>(); - // all CNAs - for (CNA aCNA : CNA.values()) { - CNAsortOrder.add(EnumSet.of(aCNA)); - } - return CNAsortOrder; - } - - public static ArrayList> defaultMRNASortOrder() { - ArrayList> MRNAsortOrder = new ArrayList>(); - // all MRNAs - for (MRNA aMRNA : MRNA.values()) { - MRNAsortOrder.add(EnumSet.of(aMRNA)); - } - return MRNAsortOrder; - } - - public static ArrayList> defaultRPPASortOrder() { - ArrayList> RPPAsortOrder = new ArrayList>(); - // all MRNAs - for (RPPA aRPPA : RPPA.values()) { - RPPAsortOrder.add(EnumSet.of(aRPPA)); - } - return RPPAsortOrder; - } - - public static ArrayList> defaultMutationsSortOrder() { - ArrayList> mutationsSortOrder = new ArrayList>(); - // all mutations - for (mutations aMutations : mutations.values()) { - mutationsSortOrder.add(EnumSet.of(aMutations)); - } - return mutationsSortOrder; - } - - private void initSortOrder(){ - // verify that all elements of each enumeration are provided; otherwise compare() or equals() will die - // CNA - int val = 1; - for( EnumSet aCNAset: cnaSortOrder){ - for( CNA aCNA : aCNAset){ - cnaSortOrderHash.put(aCNA, Integer.valueOf(val) ); - //System.out.println( aCNA + ": " + val ); - } - val++; - } - - // verify all CNAs - for (CNA aCNA : CNA.values()){ - if( !cnaSortOrderHash.containsKey(aCNA) ){ - throw new IllegalArgumentException("CNA sets missing: " + aCNA ); - } - } - - // MRNA - val = 1; - for( EnumSet aMRNAset: mRnaSortOrder){ - for( MRNA aMRNA : aMRNAset){ - mrnaSortOrderHash.put(aMRNA, Integer.valueOf(val) ); - //System.out.println( aMRNA + ": " + val ); - } - val++; - } - // verify all MRNAs - for (MRNA aMRNA : MRNA.values()){ - if( !mrnaSortOrderHash.containsKey(aMRNA) ){ - throw new IllegalArgumentException("MRNA sets missing: " + aMRNA ); - } - } - - // RPPA - val = 1; - for( EnumSet aRPPAset: rppaSortOrder){ - for( RPPA aRPPA : aRPPAset){ - rppaSortOrderHash.put(aRPPA, Integer.valueOf(val) ); - //System.out.println( aMRNA + ": " + val ); - } - val++; - } - // verify all RPPAs - for (RPPA aRPPA : RPPA.values()){ - if( !rppaSortOrderHash.containsKey(aRPPA) ){ - throw new IllegalArgumentException("RPPA sets missing: " + aRPPA ); - } - } - - // mutations - val = 1; - for( EnumSet aMutationsSet: mutationsSortOrder){ - for( mutations aMutations : aMutationsSet){ - mutationsSortOrderHash.put( aMutations, Integer.valueOf(val) ); - //System.out.println( aMutations + ": " + val ); - } - val++; - } - // verify all mutations - for (mutations aMutations : mutations.values()){ - if( !mutationsSortOrderHash.containsKey(aMutations) ){ - throw new IllegalArgumentException("mutations sets missing: " + aMutations ); - } - } - - } - - public int compare(Object o1, Object o2) { - if( !( o1 instanceof GeneticEventImpl && o2 instanceof GeneticEventImpl )){ - throw new IllegalArgumentException("objects not GeneticEventImpl" ); - } - GeneticEventImpl ge1 = (GeneticEventImpl) o1; - GeneticEventImpl ge2 = (GeneticEventImpl) o2; - - // for now, significance of data types is CNA, expression, mutation - // CNA - if( cnaSortOrderHash.get( ge1.getCnaValue() ).intValue() < cnaSortOrderHash.get( ge2.getCnaValue() ).intValue() ){ - return -1; - } - if( cnaSortOrderHash.get( ge1.getCnaValue() ).intValue() > cnaSortOrderHash.get( ge2.getCnaValue() ).intValue() ){ - return 1; - } - - // MRNA - if( mrnaSortOrderHash.get( ge1.getMrnaValue() ).intValue() < mrnaSortOrderHash.get - ( ge2.getMrnaValue() ).intValue() ){ - return -1; - } - if( mrnaSortOrderHash.get( ge1.getMrnaValue() ).intValue() > mrnaSortOrderHash.get - ( ge2.getMrnaValue() ).intValue() ){ - return 1; - } - - // RPPA - if( rppaSortOrderHash.get( ge1.getRPPAValue() ).intValue() < rppaSortOrderHash.get - ( ge2.getRPPAValue() ).intValue() ){ - return -1; - } - if( rppaSortOrderHash.get( ge1.getRPPAValue() ).intValue() > rppaSortOrderHash.get - ( ge2.getRPPAValue() ).intValue() ){ - return 1; - } - - // mutations - if( mutationsSortOrderHash.get( ge1.getMutationValue() ).intValue() < mutationsSortOrderHash.get - ( ge2.getMutationValue() ).intValue() ){ - return -1; - } - if( mutationsSortOrderHash.get( ge1.getMutationValue() ).intValue() > mutationsSortOrderHash.get - ( ge2.getMutationValue() ).intValue() ){ - return 1; - } - - return 0; - } - - public boolean equals(Object obj1, Object obj2 ) { - if (obj1 instanceof GeneticEvent && obj2 instanceof GeneticEvent ) { - GeneticEvent ge1 = (GeneticEvent) obj2; - GeneticEvent ge2 = (GeneticEvent) obj1; - - // CNA - if( cnaSortOrderHash.get( ge1.getCnaValue() ).intValue() != cnaSortOrderHash.get - ( ge2.getCnaValue() ).intValue() ){ - return false; - } - - // MRNA - if( mrnaSortOrderHash.get( ge1.getMrnaValue() ).intValue() != mrnaSortOrderHash.get - ( ge2.getMrnaValue() ).intValue() ){ - return false; - } - - // RPPA - //System.out.println(ge1.getRPPAValue()); - //System.out.println(rppaSortOrderHash.get( ge1.getRPPAValue() )); - //System.out.println(rppaSortOrderHash.get( ge1.getRPPAValue() ).intValue()); - if( rppaSortOrderHash.get( ge1.getRPPAValue() ).intValue() != rppaSortOrderHash.get - ( ge2.getRPPAValue() ).intValue() ){ - return false; - } - - // mutations - if( mutationsSortOrderHash.get( ge1.getMutationValue() ).intValue() != mutationsSortOrderHash.get - ( ge2.getMutationValue() ).intValue() ){ - return false; - } - return true; - } - return false; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEventImpl.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEventImpl.java deleted file mode 100644 index 588844c348e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticEventImpl.java +++ /dev/null @@ -1,359 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticTypeLevel; -import org.mskcc.cbio.portal.util.ValueParser; - -/** - * Implementation of Genetic Event Interface. - * - * @author Ethan Cerami and Arthur Goldberg. - */ -public class GeneticEventImpl implements GeneticEvent { - - public enum CNA { AMPLIFIED, GAINED, DIPLOID, HEMIZYGOUSLYDELETED, HOMODELETED, NONE } - - public enum MRNA { UPREGULATED, NORMAL, DOWNREGULATED, NOTSHOWN } - - public enum RPPA { UPREGULATED, NORMAL, DOWNREGULATED, NOTSHOWN } - - public enum mutations { MUTATED, UNMUTATED, NONE } - - private CNA cnaValue; - private MRNA mrnaValue; - private RPPA rppaValue; - private mutations isMutated; - private String mutationType; // mutation type - private String gene; - private String caseId; - - private GeneticEventComparator geneticEventComparator = null; - - /** - * Constructor. - * - */ - public GeneticEventImpl(ValueParser valueParser, String gene, String caseId) { - this.gene = gene; - this.caseId = caseId; - - /* - * was: - - // TODO: this might be wrong! what should be the default? - cnaValue = CNA.Diploid; - if (valueParser.isCnaAmplified()) { - cnaValue = CNA.Amplified; - } else if (valueParser.isCnaHemizygouslyDeleted()) { - cnaValue = CNA.HemizygouslyDeleted; - } else if (valueParser.isCnaHomozygouslyDeleted()) { - cnaValue = CNA.HomozygouslyDeleted; - } - */ - cnaValue = CNA.NONE; - if( valueParser == null ){ - System.err.println( "in GeneticEventImpl w null valueParser gene: " + gene + " case: "+ caseId); - return; - } - - GeneticTypeLevel theGeneticTypeLevel = valueParser.getCNAlevel(); - if( null != theGeneticTypeLevel ){ - switch( valueParser.getCNAlevel() ){ - case Amplified: - cnaValue = CNA.AMPLIFIED; - break; - case Diploid: - cnaValue = CNA.DIPLOID; - break; - case Gained: - cnaValue = CNA.GAINED; - break; - case HemizygouslyDeleted: - cnaValue = CNA.HEMIZYGOUSLYDELETED; - break; - case HomozygouslyDeleted: - cnaValue = CNA.HOMODELETED; - break; - } - } - - mrnaValue = MRNA.NOTSHOWN; - if (valueParser.isMRNAWayUp()) { - mrnaValue = MRNA.UPREGULATED; - } else if (valueParser.isMRNAWayDown()) { - mrnaValue = MRNA.DOWNREGULATED; - } - - rppaValue = RPPA.NOTSHOWN; - if (valueParser.isRPPAWayUp()) { - rppaValue = RPPA.UPREGULATED; - } else if (valueParser.isRPPAWayDown()) { - rppaValue = RPPA.DOWNREGULATED; - } - - isMutated = mutations.UNMUTATED; - - mutationType = "Mutation cannot be determined"; - if (valueParser.isMutated()) { - isMutated = mutations.MUTATED; - // get type - mutationType = valueParser.getMutationType(); - } - } - - // TODO: really should be static, but then there's no place to store the geneticEventComparator; think of a work-around - public void setGeneticEventComparator( GeneticEventComparator geneticEventComparator ){ - this.geneticEventComparator = geneticEventComparator; - } - - /** - * Gets the CNA Value. - * - * @return cna Value. - */ - public CNA getCnaValue() { - return cnaValue; - } - - /** - * Gets the MRNA Value. - * - * @return mRNA Value. - */ - public MRNA getMrnaValue() { - return mrnaValue; - } - - /** - * Gets the RPPA Value. - * - * @return RPPA Value. - */ - public RPPA getRPPAValue() { - return rppaValue; - } - - /** - * Gets the mutation Value. - * - * @return mutation Value. - */ - public mutations getMutationValue() { - return isMutated; - } - - /** - * Gets the mutation type (amino acid change). - * - * @return mutation Type. - */ - public String getMutationType() { - return mutationType; - } - - /** - * Constructor, to be used primarily by JUnit Tests. - * - * @cnaValue Copy Number Value, discretized -2, -1, 0, 1, 2. - * @mrnaValue mRNA Value, discretized: -1, 0, 1 - */ - public GeneticEventImpl(int cnaValue, int mrnaValue, int rppaValue, boolean isMutated) { - - switch (cnaValue) { - case 2 : - this.cnaValue = CNA.AMPLIFIED; - break; - case 1 : - this.cnaValue = CNA.GAINED; - break; - case 0 : - this.cnaValue = CNA.DIPLOID; - break; - case -1 : - this.cnaValue = CNA.HEMIZYGOUSLYDELETED; - break; - case -2 : - this.cnaValue = CNA.HOMODELETED; - break; - default : - throw new IllegalArgumentException("Illegal cnaValue: " + cnaValue); - } - - switch (mrnaValue) { - case 1 : - this.mrnaValue = MRNA.UPREGULATED; - break; - case 0 : - this.mrnaValue = MRNA.NORMAL; - break; - case -1 : - this.mrnaValue = MRNA.DOWNREGULATED; - break; - default : - throw new IllegalArgumentException("Illegal mrnaValue: " - + mrnaValue); - } - - switch (rppaValue) { - case 1 : - this.rppaValue = RPPA.UPREGULATED; - break; - case 0 : - this.rppaValue = RPPA.NORMAL; - break; - case -1 : - this.rppaValue = RPPA.DOWNREGULATED; - break; - default : - throw new IllegalArgumentException("Illegal mrnaValue: " - + rppaValue); - } - - if (isMutated) { - this.isMutated = mutations.MUTATED; - } else { - this.isMutated = mutations.UNMUTATED; - } - } - - public GeneticEventImpl(CNA cnaValue, MRNA mrnaValue, RPPA rppaValue, mutations isMutated) { - - this.cnaValue = cnaValue; - this.mrnaValue = mrnaValue; - this.rppaValue = rppaValue; - this.isMutated = isMutated; - } - - /** - * Is the Gene Amplified at the Copy Number Level? - * - * @return true or false. - */ - public boolean isCnaAmplified() { - return(cnaValue == CNA.AMPLIFIED); - } - - /** - * Is the Gene Homozygously Deleted at the Copy Number Level? - * - * @return true or false. - */ - public boolean isCnaHomozygouslyDeleted() { - return(cnaValue == CNA.HOMODELETED); - } - - /** - * Is the Gene Heterozgously Deleted at the Copy Number Level? - * - * @return true or false. - */ - public boolean isCnaHeterozygousDeleted() { - return(cnaValue == CNA.HEMIZYGOUSLYDELETED); - } - - /** - * Is the Gene mRNA upregulated? - * - * @return true or false. - */ - public boolean isMRNAUpRegulated() { - return(mrnaValue == MRNA.UPREGULATED); - } - - /** - * Is the Gene mRNA down-regulated? - * - * @return true or false. - */ - public boolean isMRNADownRegulated() { - return(mrnaValue == MRNA.DOWNREGULATED); - } - - /** - * Is the Gene RPPA upregulated? - * - * @return true or false. - */ - public boolean isRPPAUpRegulated() { - return(rppaValue == RPPA.UPREGULATED); - } - - /** - * Is the Gene RPPA down-regulated? - * - * @return true or false. - */ - public boolean isRPPADownRegulated() { - return(rppaValue == RPPA.DOWNREGULATED); - } - - /** - * Is gene mutated. - * - * @return true or false. - */ - public boolean isMutated() { - return( isMutated == mutations.MUTATED); - } - - /** - * Gets the Gene. - * @return Gene Symbol. - */ - public String getGene() { - return gene; - } - - /** - * Gets the Case ID. - * @return case ID. - */ - public String caseCaseId() { - return caseId; - } - - public boolean equals(Object obj) { - if( geneticEventComparator != null ){ - return geneticEventComparator.equals(this, obj); - } - - // TODO: should be different exception - throw new IllegalArgumentException("Cannot execute GeneticEventImpl.equals, geneticEventComparator not set, call setGeneticEventComparator."); - } - - @Override - public String toString() { - return (gene + ":" + cnaValue + ":" + mrnaValue + ":" + isMutated); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticProfile.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneticProfile.java deleted file mode 100644 index 9ebc0f96cf9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticProfile.java +++ /dev/null @@ -1,246 +0,0 @@ -/* -* Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. -* -* This library is distributed in the hope that it will be useful, but WITHOUT -* ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS -* FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder -* is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no -* obligations to provide maintenance, support, updates, enhancements or -* modifications. In no event shall Memorial Sloan-Kettering Cancer Center be -* liable to any party for direct, indirect, special, incidental or -* consequential damages, including lost profits, arising out of the use of this -* software and its documentation, even if Memorial Sloan-Kettering Cancer -* Center has been advised of the possibility of such damage. -*/ - -/* -* This file is part of cBioPortal. -* -* cBioPortal is free software: you can redistribute it and/or modify -* it under the terms of the GNU Affero General Public License as -* published by the Free Software Foundation, either version 3 of the -* License. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU Affero General Public License for more details. -* -* You should have received a copy of the GNU Affero General Public License -* along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; -import java.util.Properties; - -import org.apache.commons.lang3.builder.ToStringBuilder; - -/** - * Class for genetic profile - */ -public class GeneticProfile implements Serializable { - private int geneticProfileId; - private String stableId; - private int cancerStudyId; - private GeneticAlterationType geneticAlterationType; - private String genericAssayType; - private String datatype; - private String profileName; - private String profileDescription; - private String targetLine; - private boolean showProfileInAnalysisTab; - private Properties otherMetadataFields; - private Float pivotThreshold; - private String sortOrder; - private boolean patientLevel; - - public GeneticProfile() { - super(); - } - - public GeneticProfile(String stableId, int cancerStudyId, GeneticAlterationType geneticAlterationType, - String datatype, String profileName, String profileDescription, boolean showProfileInAnalysisTab) { - this(); - this.stableId = stableId; - this.cancerStudyId = cancerStudyId; - this.geneticAlterationType = geneticAlterationType; - this.datatype = datatype; - this.profileName = profileName; - this.profileDescription = profileDescription; - this.showProfileInAnalysisTab = showProfileInAnalysisTab; - } - - public GeneticProfile(String stableId, int cancerStudyId, GeneticAlterationType geneticAlterationType, - String datatype, String profileName, String profileDescription, boolean showProfileInAnalysisTab, float pivotThreshold, String sortOrder) { - this(stableId, cancerStudyId, geneticAlterationType, datatype, profileName, profileDescription, showProfileInAnalysisTab); - this.pivotThreshold = pivotThreshold; - this.sortOrder = sortOrder; - } - - - /** - * Constructs a new genetic profile object with the same attributes as the one given as an argument. - * - * @param template the object to copy - */ - public GeneticProfile(GeneticProfile template) { - this( - template.getStableId(), - template.getCancerStudyId(), - template.getGeneticAlterationType(), - template.getDatatype(), - template.getProfileName(), - template.getProfileDescription(), - template.showProfileInAnalysisTab()); - this.setGeneticProfileId(template.geneticProfileId); - this.setTargetLine(template.getTargetLine()); - this.setOtherMetadataFields(template.getAllOtherMetadataFields()); - this.setPivotThreshold(template.getPivotThreshold()); - this.setSortOrder(template.getSortOrder()); - this.setPatientLevel(template.getPatientLevel()); - } - - public int getGeneticProfileId() { - return geneticProfileId; - } - - public void setGeneticProfileId(int geneticProfileId) { - this.geneticProfileId = geneticProfileId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public int getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public GeneticAlterationType getGeneticAlterationType() { - return geneticAlterationType; - } - - public void setGeneticAlterationType(GeneticAlterationType geneticAlterationType) { - this.geneticAlterationType = geneticAlterationType; - } - - public String getDatatype() { - return datatype; - } - - public void setDatatype(String datatype) { - this.datatype = datatype; - } - - public String getProfileName() { - return profileName; - } - - public void setProfileName(String profileName) { - this.profileName = profileName; - } - - public String getProfileDescription() { - return profileDescription; - } - - public void setProfileDescription(String profileDescription) { - this.profileDescription = profileDescription; - } - - public String getTargetLine() { - return targetLine; - } - - public void setTargetLine(String targetLine) { - this.targetLine = targetLine; - } - - public boolean showProfileInAnalysisTab() { - return showProfileInAnalysisTab; - } - - public void setShowProfileInAnalysisTab(boolean showProfileInAnalysisTab) { - this.showProfileInAnalysisTab = showProfileInAnalysisTab; - } - - public Float getPivotThreshold() { - return this.pivotThreshold; - } - - public void setPivotThreshold(Float pivotThreshold) { - this.pivotThreshold = pivotThreshold; - } - - public String getSortOrder() { - return this.sortOrder; - } - - public void setSortOrder(String sortOrder) { - this.sortOrder = sortOrder; - } - - public String getGenericAssayType() { - return genericAssayType; - } - - public void setGenericAssayType(String genericAssayType) { - this.genericAssayType = genericAssayType; - } - - public boolean getPatientLevel() { - return patientLevel; - } - - public void setPatientLevel(boolean patientLevel) { - this.patientLevel = patientLevel; - } - - /** - * Stores metadata fields only recognized in particular data file types. - * - * @param fields a properties instance holding the keys and values - */ - public void setOtherMetadataFields(Properties fields) { - this.otherMetadataFields = fields; - } - - /** - * Returns all file-specific metadata fields as a Properties object. - * - * @return a properties instance holding the keys and values or null - */ - public Properties getAllOtherMetadataFields() { - return this.otherMetadataFields; - } - - /** - * Retrieves metadata fields specific to certain data file types. - * - * @param fieldname the name of the field to retrieve - * @return the value of the field or null - */ - public String getOtherMetaDataField(String fieldname) { - if (otherMetadataFields == null) { - return null; - } else { - return otherMetadataFields.getProperty(fieldname); - } - } - - @Override - public String toString() { - return ToStringBuilder.reflectionToString(this); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticProfileLink.java b/core/src/main/java/org/mskcc/cbio/portal/model/GeneticProfileLink.java deleted file mode 100644 index 8ee01063673..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/GeneticProfileLink.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; - -public class GeneticProfileLink implements Serializable { - - private int referringGeneticProfileId; - private int referredGeneticProfileId; - private String referenceType; - - public int getReferringGeneticProfileId() { - return referringGeneticProfileId; - } - public void setReferringGeneticProfileId(int referringGeneticProfileId) { - this.referringGeneticProfileId = referringGeneticProfileId; - } - public int getReferredGeneticProfileId() { - return referredGeneticProfileId; - } - public void setReferredGeneticProfileId(int referredGeneticProfileId) { - this.referredGeneticProfileId = referredGeneticProfileId; - } - public String getReferenceType() { - return referenceType; - } - public void setReferenceType(String referenceType) { - this.referenceType = referenceType; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Gistic.java b/core/src/main/java/org/mskcc/cbio/portal/model/Gistic.java deleted file mode 100644 index 7192bb1d916..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Gistic.java +++ /dev/null @@ -1,284 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.ArrayList; - -/** - * This represents Gistic information for a particular ROI (region of interest) - * - * @author Gideon Dresdner - */ - -public class Gistic { - - public static final int NO_SUCH_GISTIC = -1; - public static final boolean AMPLIFIED = true; // ROI is an amplified region - public static final boolean DELETED = false; // ROI is a deleted region - - private int gisticID; - private int cancerStudyId; - private int chromosome; - private String cytoband; - private int peakStart; - private int peakEnd; - private ArrayList genes_in_ROI; - private double qValue; - private boolean amp; - - /** - * Constructor. - * @param cancerStudyId database key - * @param chromosome chromosome locus (eg. chromosome 17) - * @param peakStart start of wide peak - * @param peakEnd end of wide peak - * @param qValue q-value for the ROI - * @param genes_in_ROI genes in the ROI - * @param amp_del region is amplified or deleted. To set use Gistic.AMPLIFIED or Gistic.DELETED - */ - public Gistic(int cancerStudyId, int chromosome, String cytoband, int peakStart, int peakEnd, - double qValue, ArrayList genes_in_ROI, boolean amp_del) { - - this.gisticID = NO_SUCH_GISTIC; - this.cancerStudyId = cancerStudyId; - this.chromosome = chromosome; - this.cytoband = cytoband; - this.peakStart = peakStart; - this.peakEnd = peakEnd; - this.qValue = qValue; - this.genes_in_ROI = genes_in_ROI; - this.amp = amp_del; - } - - // todo: refactor this to be a method : Gistic.getDummyGistic(); What is the syntax for factory methods? - /** - * Dummy gistic for passing between different methods that can only - * set disjoint sets of fields (see GisticReader.java) - */ - public Gistic() { - this.gisticID = NO_SUCH_GISTIC; - this.cancerStudyId = -1; - this.chromosome = -1; - this.cytoband = ""; - this.peakStart = -1; - this.peakEnd = -1; - this.qValue = -1f; - this.genes_in_ROI = new ArrayList(); - this.amp = false; - } - - /** - * Calculates the size of the ROI - * @return size of the peak in ROI - */ - public int peakSize() { - return this.peakEnd - this.peakStart; - } - - @Override public String toString() { - - return String.format("cancerStudyId=%d, " + - "chromosome: %d, " + - "cytoband: %s, " + - "peakStart: %d, " + - "peakEnd: %d, " + - "qValue: %s, " + - "genes_in_ROI: %s, " + - "amp: %s", this.cancerStudyId, - this.chromosome, - this.cytoband, - this.peakStart, - this.peakEnd, - Double.toString(this.qValue), - this.genes_in_ROI, - this.amp); - } - - /** - * Sets the internal ID associated with this record - * @param internalId - */ - - public void setInternalId(int internalId) { - this.gisticID = internalId; - } - - /** - * Sets the Cancer Study Id of a gistic - * @param cancerStudyId - */ - public void setCancerStudyId(int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - /** - * Sets the chromosome of a gistic - * @param chromosome - */ - public void setChromosome(int chromosome) { - this.chromosome = chromosome; - } - - /** - * Sets the cytoband of a gistic - * @param cytoband - */ - public void setCytoband (String cytoband) { - this.cytoband = cytoband; - } - - /** - * Sets the start of the peak of the ROI - * @param peakStart - */ - public void setPeakStart(int peakStart) { - this.peakStart = peakStart; - } - - /** - * Sets the end of the peak of the ROI - * @param peakEnd - */ - public void setPeakEnd(int peakEnd) { - this.peakEnd = peakEnd; - } - - /** - * Sets the genes in the ROI - * @param genes_in_ROI - */ - public void setGenes_in_ROI(ArrayList genes_in_ROI) { - this.genes_in_ROI = genes_in_ROI; - } - - /** - * Adds a gene to the genes in the ROI. - * N.B. All this method does is wrap the add function. - * It does not fancy. Specifically, - * it does *not* check for duplicates. - * @param gene - */ - public void addGene(CanonicalGene gene) { - this.genes_in_ROI.add(gene); - } - - /** - * Sets the q-value of the ROI - * @param qValue - */ - public void setqValue(double qValue) { - this.qValue = qValue; - } - - /** - * Sets whether the ROI is a deletion or amplification - * Use Gistic.AMPLIFIED and Gistic.DELETED - * @param amp - */ - public void setAmp(boolean amp) { - this.amp = amp; - } - - /** - * Returns the chromosome location in chromosome-arm-band notation, - * called chromosome notation (e.g. 1q12) - * @return chromosome locus of ROI - */ - public int getChromosome() { - return chromosome; - } - - /** - * Returns the cytoband - * @return cytoband of the ROI - */ - public String getCytoband() { - return cytoband; - } - - /** - * Returns the start of the peak - * @return start of peak of ROI - */ - public int getPeakStart() { - return peakStart; - } - - /** - * Returns the end of the peak - * @return end of peak of ROI - */ - public int getPeakEnd() { - return peakEnd; - } - - /** - * Returns a list of the genes in the ROI - * @return List of genes in the wide peak of the ROI - */ - public ArrayList getGenes_in_ROI() { - return genes_in_ROI; - } - - /** - * Returns the q-value of the wide peak - * @return q-value of wide peak - */ - public double getqValue() { - return qValue; - } - - /** - * Returns the internal CancerStudy ID of the study associated with this ROI - * @return Returns the internal CancerStudy ID of the ROI - */ - public int getCancerStudyId() { - return cancerStudyId; - } - - /** - * Returns the internal ID associated with this ROI - * @return internal ID associated with this ROI - */ - public int getInternalId() { - return gisticID; - } - - /** - * Returns whether or not the wide peak of ROI is a region of amplification or deletion - * @return whether or not ROI is amplified or deleted, use Gistic.AMPLIFIED or Gistic.DELETED - */ - public boolean getAmp() { - return amp; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Interaction.java b/core/src/main/java/org/mskcc/cbio/portal/model/Interaction.java deleted file mode 100644 index 54f4c670ec7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Interaction.java +++ /dev/null @@ -1,172 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * Encapsulates an Interaction. - * - * @author Ethan Cerami. - */ -public class Interaction { - private long geneA; - private long geneB; - private String interactionType; - private String experimentTypes; - private String pmids; - private String source; - - /** - * Gets Entrez Gene ID for Gene A. - * - * @return Entrez Gene ID for Gene A. - */ - public long getGeneA() { - return geneA; - } - - /** - * Sets Entrez Gene ID for Gene A. - * - * @param entrezGeneId Entrez Gene ID for Gene A. - */ - public void setGeneA(long entrezGeneId) { - this.geneA = entrezGeneId; - } - - /** - * Gets Entrez Gene ID for Gene B. - * - * @return symbol for Gene B. - */ - public long getGeneB() { - return geneB; - } - - /** - * Sets Entrez Gene ID for Gene B. - * - * @param entrezGeneID Entrez Gene ID for Gene B. - */ - public void setGeneB(long entrezGeneID) { - this.geneB = entrezGeneID; - } - - /** - * Gets the Interaction Type. - * - * @return interaction type. - */ - public String getInteractionType() { - return interactionType; - } - - /** - * Sets the Interaction Type. - * - * @param type interaction type. - */ - public void setInteractionType(String type) { - this.interactionType = type; - } - - /** - * Gets the Experiment Types. - * - * @return experiment types. - */ - public String getExperimentTypes() { - return experimentTypes; - } - - /** - * Sets the Experiment Types. - * - * @param expTypes experiment types. - */ - public void setExperimentTypes(String expTypes) { - this.experimentTypes = expTypes; - } - - /** - * Gets the PMIDs. - * - * @return PMIDs. - */ - public String getPmids() { - return pmids; - } - - /** - * Sets the PMIDs. - * - * @param p PMIDs. - */ - public void setPmids(String p) { - this.pmids = p; - } - - /** - * Gets the data source, where this interaction comes from, e.g. REACTOME. - * - * @return data source. - */ - public String getSource() { - return source; - } - - /** - * Sets the data source, where this interaction comes from, e.g. REACTOME. - * - * @param s data source - */ - public void setSource(String s) { - this.source = s; - } - - @Override - /** - * Overrides toString() - */ - public String toString() { - return "Interaction: " + geneA + " " + interactionType + " " + geneB + ", " + source; - } - - /** - * Provides a Cytoscape SIF Version of this Interaction. - * - * @return SIF Text. - */ - public String toSif() { - return geneA + " " + interactionType + " " + geneB; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/LinkOutRequest.java b/core/src/main/java/org/mskcc/cbio/portal/model/LinkOutRequest.java deleted file mode 100644 index 65b27948a50..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/LinkOutRequest.java +++ /dev/null @@ -1,145 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.servlet.ServletXssUtil; -import org.mskcc.cbio.portal.web_api.ProtocolException; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.owasp.validator.html.PolicyException; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import javax.servlet.http.HttpServletRequest; -import java.net.URLEncoder; -import java.io.UnsupportedEncodingException; -import java.util.Set; -import java.util.HashSet; - -/** - * Encapsulates parameters for a Link Out Request. - */ -public class LinkOutRequest { - public static final String STABLE_PARAM_CANCER_STUDY_ID = "cancer_study_id"; - public static final String STABLE_PARAM_GENE_LIST = "gene_list"; - public static final String STABLE_PARAM_QUERY = "q"; - public static final String STABLE_PARAM_REPORT = "report"; - public static final String REPORT_FULL = "full"; - public static final String REPORT_ONCOPRINT_HTML = "oncoprint_html"; - private static Logger logger = LoggerFactory.getLogger(LinkOutRequest.class); - - private String cancerStudyId; - private String geneList; - private String report; - private ServletXssUtil xssUtil; - private boolean isCrossCancerQuery = false; - - public LinkOutRequest(HttpServletRequest httpServletRequest) throws ProtocolException, DaoException { - try { - xssUtil = ServletXssUtil.getInstance(); - } catch (PolicyException e) { - logger.error("Could not instantiate XSS Util: " + e.toString()); - } - getParametersSafely(httpServletRequest); - validateParameters(); - } - - public String getCancerStudyId() { - return cancerStudyId; - } - - public String getGeneList() { - return geneList; - } - - public String getGeneListUrlEncoded() throws UnsupportedEncodingException { - return URLEncoder.encode(geneList, "UTF-8"); - } - - public String getReport() { - return report; - } - - private void getParametersSafely(HttpServletRequest httpServletRequest) { - cancerStudyId = xssUtil.getCleanInput(httpServletRequest, STABLE_PARAM_CANCER_STUDY_ID); - geneList = xssUtil.getCleanInput(httpServletRequest, STABLE_PARAM_GENE_LIST); - if (geneList==null) { - geneList = xssUtil.getCleanInput(httpServletRequest, STABLE_PARAM_QUERY); - } - report = xssUtil.getCleanInput(httpServletRequest, STABLE_PARAM_REPORT); - } - - public boolean isIsCrossCancerQuery() { - return isCrossCancerQuery; - } - - private void validateParameters() throws ProtocolException, DaoException { - validateCancerStudyId(); - validateGeneList(); - validateOutput(); - } - - private void validateGeneList() throws ProtocolException { - if (geneList == null || geneList.length() == 0) { - throw new ProtocolException (LinkOutRequest.STABLE_PARAM_GENE_LIST + " is not specified"); - } - } - - private void validateCancerStudyId() throws ProtocolException, DaoException { - if (cancerStudyId == null || cancerStudyId.length() == 0 || cancerStudyId.equalsIgnoreCase("all")) { - isCrossCancerQuery = true; - } -// CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); -// if (cancerStudy == null) { -// throw new ProtocolException(cancerStudyId + " is not a recognized cancer study ID."); -// } - } - - private void validateOutput() throws ProtocolException { - Set validOutputs = initValidOutputSet(); - if (report == null || report.length() == 0) { - report = REPORT_FULL; - } else { - if (!validOutputs.contains(report.toLowerCase())) { - throw new ProtocolException("Unrecognized " + STABLE_PARAM_REPORT + ": " + report); - } - } - } - - private Set initValidOutputSet() { - Set validOutputs = new HashSet(); - validOutputs.add(REPORT_FULL); - validOutputs.add(REPORT_ONCOPRINT_HTML); - return validOutputs; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/MicroRna.java b/core/src/main/java/org/mskcc/cbio/portal/model/MicroRna.java deleted file mode 100644 index 0d4730c8584..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/MicroRna.java +++ /dev/null @@ -1,52 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * Class for micro rna data - */ -public class MicroRna extends Gene{ - private String microRnaId; - - public MicroRna(String microRnaId) { - this.microRnaId = microRnaId; - } - - public String getStandardSymbol() { - return microRnaId; - } - - public String getMicroRnaId() { - return microRnaId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/MutSig.java b/core/src/main/java/org/mskcc/cbio/portal/model/MutSig.java deleted file mode 100644 index fb563a6b451..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/MutSig.java +++ /dev/null @@ -1,141 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.dao.DaoException; - -/** - * @author Lennart Bastian - * We use MutSig as an object to simplify the process of adding and getting - * data from the mut_sig database in CGDS. - * The MutSig object takes a total of 13 parameters, 12 of which correspond - * directly to MutSig data columns, and one of which is a CanonicalGene Object, - * containing a HugeGeneSymbol and EntrezGeneID. - * This simplifies the process of switching back between the two, and ensuring - * a stable system in which gene IDs do not fluctuate. - */ - -public class MutSig { - private int cancerType; - private int rank; - private CanonicalGene canonicalGene; - private int numBasesCovered; - private int numMutations; - private float pValue; - private float qValue; - - public MutSig() { - - } - - public MutSig(int cancerType, CanonicalGene canonicalGene, int rank, - int numBasesCovered, int numMutations, float pValue, float qValue) { - this.cancerType = cancerType; - this.rank = rank; - this.canonicalGene = canonicalGene; - this.numBasesCovered = numBasesCovered; - this.numMutations = numMutations; - this.pValue = pValue; - this.qValue = qValue; - } - // ignoring fields : - // nVal, nVer, cpg, cAndG, aAndT, inDel, adjustedQValue - - -// note: getCanonicalGene will return a CanonicalGene object. - - public MutSig getInstance() throws DaoException { - return this; - } - - public int getCancerType() { - return cancerType; - } - - public int getRank() { - return rank; - } - - public CanonicalGene getCanonicalGene() { - return canonicalGene; - } - - public int getNumBasesCovered() { - return numBasesCovered; - } - - public int getNumMutations() { - return numMutations; - } - - public float getpValue() { - return pValue; - } - - public float getqValue() { - return qValue; - } - - public void setCancerType(int cancerType) { - this.cancerType = cancerType; - } - - public void setRank(int rank) { - this.rank = rank; - } - - public void setCanonicalGene(CanonicalGene canonicalGene) { - this.canonicalGene = canonicalGene; - } - - public void setNumBasesCovered(int numBasesCovered) { - this.numBasesCovered = numBasesCovered; - } - - public void setNumMutations(int numMutations) { - this.numMutations = numMutations; - } - - public void setpValue(float pValue) { - this.pValue = pValue; - } - - public void setqValue(float qValue) { - this.qValue = qValue; - } - - public String toString() { - return String.format("[canonicalGene: %s, numBasesCovered: %d, numMutations: %d, qValue: %f]", - this.getCanonicalGene(), this.numBasesCovered, this.numMutations, this.qValue); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/MutationStatus.java b/core/src/main/java/org/mskcc/cbio/portal/model/MutationStatus.java deleted file mode 100644 index 79799bd116c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/MutationStatus.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * Class for mutation status - */ -public class MutationStatus { - public static final int MUTATED = 1; - public static final int NOT_MUTATED = 0; - public static final int NO_DATA = -9999; - - public static int getMutationStatus(String value) { - //if (value < -1 || value > 1) { - // throw new IllegalArgumentException("Can't handle mutation value of: " + value); - //} else { - return (value.equals("0")) ? NOT_MUTATED : MUTATED; - //} - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Patient.java b/core/src/main/java/org/mskcc/cbio/portal/model/Patient.java deleted file mode 100644 index 7ce2fc51b4e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Patient.java +++ /dev/null @@ -1,183 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.Map; -import java.util.HashMap; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Encapsulates Patient Data. - * - * @author Benjamin Gross - */ -public class Patient { - - private int internalId; - private String stableId; - private CancerStudy cancerStudy; - - private Map clinicalDataMap; - private static final Logger logger = LoggerFactory.getLogger(Patient.class); - - public Patient(CancerStudy cancerStudy, String stableId) - { - this(cancerStudy, stableId, -1, new HashMap()); - } - - public Patient(CancerStudy cancerStudy, String stableId, int internalId) - { - this(cancerStudy, stableId, internalId, new HashMap()); - } - - public Patient(CancerStudy cancerStudy, String stableId, int internalId, Map clinicalDataMap) - { - this.cancerStudy = cancerStudy; - this.stableId = stableId; - this.internalId = internalId; - this.clinicalDataMap = clinicalDataMap; - } - - @Override - public String toString() - { - return stableId; - } - - @Override - public boolean equals(Object obj) { - if (!(obj instanceof Patient)) { - return false; - } - - Patient anotherPatient = (Patient)obj; - if (this.internalId != anotherPatient.getInternalId()) { - return false; - } - - if (this.cancerStudy.getInternalId() != anotherPatient.getCancerStudy().getInternalId()) { - return false; - } - - return true; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 41 * hash + (this.stableId != null ? this.stableId.hashCode() : 0); - hash = 41 * hash + this.cancerStudy.getInternalId(); - return hash; - } - - public CancerStudy getCancerStudy() - { - return cancerStudy; - } - - public int getInternalId() - { - return internalId; - } - - public String getStableId() - { - return stableId; - } - - public Double getOverallSurvivalMonths() - { - return getDoubleValue(ClinicalAttribute.OS_MONTHS); - } - public String getOverallSurvivalStatus() - { - return getStringValue(ClinicalAttribute.OS_STATUS); - } - public Double getDiseaseFreeSurvivalMonths() - { - return getDoubleValue(ClinicalAttribute.DFS_MONTHS); - } - public String getDiseaseFreeSurvivalStatus() - { - return getStringValue(ClinicalAttribute.DFS_STATUS); - } - public Double getAgeAtDiagnosis() - { - return getDoubleValue(ClinicalAttribute.AGE_AT_DIAGNOSIS); - } - public Integer getSampleCount() - { - return getIntegerValue(ClinicalAttribute.SAMPLE_COUNT); - } - - private Double getDoubleValue(String attribute) - { - ClinicalData data = clinicalDataMap.get(attribute); - if (data == null || data.getAttrVal().length() == 0 || - data.getAttrVal().equals(ClinicalAttribute.NA) || - data.getAttrVal().equals(ClinicalAttribute.MISSING)) { - return null; - } - try { - return Double.valueOf(data.getAttrVal()); - } catch (NumberFormatException e) { - logger.warn("Can't handle clinical attribute of patient: " + stableId); - return null; - } - } - - private Integer getIntegerValue(String attribute) - { - ClinicalData data = clinicalDataMap.get(attribute); - if (data == null || data.getAttrVal().length() == 0 || - data.getAttrVal().equals(ClinicalAttribute.NA) || - data.getAttrVal().equals(ClinicalAttribute.MISSING)) { - return null; - } - try { - return Integer.valueOf(data.getAttrVal()); - } catch (NumberFormatException e) { - logger.warn("Can't handle clinical attribute of patient: " + stableId); - return null; - } - } - - private String getStringValue(String attribute) - { - ClinicalData data = clinicalDataMap.get(attribute); - return (data == null || data.getAttrVal().length() == 0 || - data.getAttrVal().equals(ClinicalAttribute.NA) || - data.getAttrVal().equals(ClinicalAttribute.MISSING)) ? null : data.getAttrVal(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ProfileData.java b/core/src/main/java/org/mskcc/cbio/portal/model/ProfileData.java deleted file mode 100644 index 7548c68410e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ProfileData.java +++ /dev/null @@ -1,188 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.util.ValueParser; - -import java.util.ArrayList; -import java.util.HashMap; - -/** - * Encapsulates Genetic Profile Data. - * Stores the properties of each gene in each case. - * Also stores lists of the genes and cases. - * - * @author Ethan Cerami. - */ -public class ProfileData { - private String[][] matrix; - private GeneticProfile geneticProfile; - - // primary store of profile's data: - private HashMap mapFromGeneAndCaseToGeneProperties = new HashMap(); - private ArrayList caseIdList = new ArrayList(); - private ArrayList geneList = new ArrayList(); - - /** - * Constructor. - * - * @param geneticProfile GeneticProfile Object. - * @param matrix 2D Matrix of Data - */ - public ProfileData(GeneticProfile geneticProfile, String[][] matrix) { - this.geneticProfile = geneticProfile; - this.matrix = matrix; - processMatrix(); - } - - /** - * Constructor. - * - * @param hashMap HashMap of Data. - * @param geneList List of Genes. - * @param caseIdList List of Case Ids. - */ - public ProfileData(HashMap hashMap, - ArrayList geneList, ArrayList caseIdList) { - this.mapFromGeneAndCaseToGeneProperties = hashMap; - this.geneList = geneList; - this.caseIdList = caseIdList; - } - - /** - * Gets the Data Matrix. - * - * @return 2D Matrix of Data. - */ - public String[][] getMatrix() { - return matrix; - } - - /** - * Gets the Genetic Profile. - * - * @return Genetic Profile Object. - */ - public GeneticProfile getGeneticProfile() { - return geneticProfile; - } - - /** - * Gets the value of gene X in case Y. - * - * @param geneSymbol Gene Symbol. - * @param caseId Case ID. - * @return value. - */ - public String getValue(String geneSymbol, String caseId) { - String key = createKey(geneSymbol, caseId); - return mapFromGeneAndCaseToGeneProperties.get(key); - } - - /** - * Gets the value of gene X in case Y. - * - * @param geneSymbol Gene Symbol. - * @param caseId Case ID. - * @return value. - */ - public ValueParser getValueParsed(String geneSymbol, String caseId, double zScoreThreshold) { - String key = createKey(geneSymbol, caseId); - String value = mapFromGeneAndCaseToGeneProperties.get(key); - if (value != null) { - return new ValueParser (value, zScoreThreshold); - } - return null; - } - - /** - * Gets list of case Ids. - * - * @return ArrayList of Case IDs. - */ - public ArrayList getCaseIdList() { - return caseIdList; - } - - /** - * Gets list of gene symbols. - * - * @return ArrayList of Gene Symbols. - */ - public ArrayList getGeneList() { - return geneList; - } - - /** - * Process the data matrix. - */ - private void processMatrix() { - // First, extract the case IDs - if (matrix[0].length > 0) { - for (int cols = 2; cols < matrix[0].length; cols++) { - String caseId = matrix[0][cols]; - caseIdList.add(caseId); - } - } - - // Then, extract the gene list - if (matrix.length > 0) { - for (int rows = 1; rows < matrix.length; rows++) { - String geneSymbol = matrix[rows][1]; - geneList.add(geneSymbol); - } - } - - // Then, store to hashtable for quick look up - for (int rows = 1; rows < matrix.length; rows++) { - for (int cols = 2; cols < matrix[0].length; cols++) { - String value = matrix[rows][cols]; - String caseId = matrix[0][cols]; - String geneSymbol = matrix[rows][1]; - String key = createKey(geneSymbol, caseId); - mapFromGeneAndCaseToGeneProperties.put(key, value); - } - } - } - - /** - * Create gene + case ID key. - * - * @param geneSymbol gene symbol. - * @param caseId case ID. - * @return hash key. - */ - private String createKey(String geneSymbol, String caseId) { - return geneSymbol + ":" + caseId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ProfileDataSummary.java b/core/src/main/java/org/mskcc/cbio/portal/model/ProfileDataSummary.java deleted file mode 100644 index 68747d20117..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ProfileDataSummary.java +++ /dev/null @@ -1,474 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.ArrayList; - -import java.util.Collections; -import java.util.Comparator; -import java.util.EnumMap; -import java.util.HashMap; - -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticTypeLevel; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneWithSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintSpecification; -import org.mskcc.cbio.portal.util.ValueParser; - -/** - * Utility Class for Summarizing Profile Data. - */ -public class ProfileDataSummary { - private HashMap geneAlteredMap = new HashMap(); - private HashMap geneMutatedMap = new HashMap(); - private HashMap> geneCNALevelMap - = new HashMap>(); - private HashMap geneMRNAUpDownMap = new HashMap(); - private HashMap numCasesAlteredMap = new HashMap(); - private ArrayList geneAlteredList = new ArrayList(); - private HashMap caseAlteredMap = null; //lazy init - private HashMap> mapGeneCaseParser = - new HashMap>(); - private double percentOfCasesWithAlteredPathway; - private ProfileData profileData; - private double zScoreThreshold; - private double rppaScoreThreshold; - private OncoPrintSpecification theOncoPrintSpecification; - private int numCasesAffected; - - /** - * Calculate summary statistics for the cancer profiles in data, as filtered - * through theOncoPrintSpecification and the - * zScoreThreshold. - * - * @param data - * @param theOncoPrintSpecification - * @param zScoreThreshold - */ - public ProfileDataSummary(ProfileData data, - OncoPrintSpecification theOncoPrintSpecification, - double zScoreThreshold, - double rppaScoreThreshold) { - this.profileData = data; - this.theOncoPrintSpecification = theOncoPrintSpecification; - this.zScoreThreshold = zScoreThreshold; - this.rppaScoreThreshold = rppaScoreThreshold; - ArrayList geneList = data.getGeneList(); - ArrayList caseList = data.getCaseIdList(); - geneAlteredList = determineFrequencyOfGeneAlteration(geneList, caseList); - } - - /** - * Gets the embedded Profile Data Object. - * - * @return ProfileData Object. - */ - public ProfileData getProfileData() { - return this.profileData; - } - - /** - * Gets the list of gene ordered by frequency of alteration. - * - * @return ArrayList of GeneWithScore Objects. - */ - public ArrayList getGeneFrequencyList() { - return geneAlteredList; - } - - /** - * Gets percent of cases where gene X is altered. - * - * @param gene gene symbol. - * @return percentage value. - */ - public double getPercentCasesWhereGeneIsAltered(String gene) { - return geneAlteredMap.get(gene); - } - - /** - * Gene Number of cases where gene X is altered. - * - * @param gene gene symbol. - * @return percentage value. - */ - public int getNumCasesWhereGeneIsAltered(String gene) { - return numCasesAlteredMap.get(gene); - } - - /** - * Does this case contain an alteration in at least one gene in the set. - * - * @param caseId case ID. - * @return true or false. - */ - public boolean isCaseAltered(String caseId) { - determineFrequencyOfCaseAlteration(); - if (caseAlteredMap.get(caseId) != null) { - return caseAlteredMap.get(caseId); - } - return false; - } - - /** - * Gets percent of cases that contain an alteration in at least one gene in the set. - * - * @return percent value. - */ - public double getPercentCasesAffected() { - determineFrequencyOfCaseAlteration(); - return this.percentOfCasesWithAlteredPathway; - } - - /** - * Gets number of cases that contain an alteration in at least one gene in the set. - * - * @return number of cases. - */ - public int getNumCasesAffected() { - determineFrequencyOfCaseAlteration(); - return this.numCasesAffected; - } - - private ValueParser getValueParser(String gene, String caseId) { - HashMap mapCaseParser = mapGeneCaseParser.get(gene); - if (mapCaseParser==null) { - mapCaseParser = new HashMap(); - mapGeneCaseParser.put(gene, mapCaseParser); - } - - ValueParser parser = mapCaseParser.get(caseId); - if (parser==null) { - String value = profileData.getValue(gene, caseId); - parser = ValueParser.generateValueParser(gene, value, - this.zScoreThreshold, this.rppaScoreThreshold, - this.theOncoPrintSpecification); - mapCaseParser.put(caseId, parser); - } - return parser; - - } - - /** - * Determines if the gene X is altered in case Y. - * - * @param gene gene symbol. - * @param caseId case Id. - * @return true or false. - */ - public boolean isGeneAltered(String gene, String caseId) { - ValueParser parser = getValueParser(gene, caseId); - if( null != parser ){ - return parser.isGeneAltered(); - } - return false; - } - - /** - * Determines if the gene X is mutated in case Y. - * - * @param gene gene symbol. - * @param caseId case Id. - * @return true or false. - */ - public boolean isGeneMutated(String gene, String caseId) { - ValueParser parser = getValueParser(gene, caseId); - if( null != parser ){ - return parser.isMutated(); - } - return false; - } - - /** - * Get the CNA level of gene X in case Y. - * - * @param gene gene symbol. - * @param caseId case Id. - * @return CNV level. - */ - public GeneticTypeLevel getCNALevel(String gene, String caseId) { - ValueParser parser = getValueParser(gene, caseId); - if( null != parser ){ - if (parser.isCnaAmplified()) { - return GeneticTypeLevel.Amplified; - } else if (parser.isCnaGained()) { - return GeneticTypeLevel.Gained; - } else if (parser.isCnaHemizygouslyDeleted()) { - return GeneticTypeLevel.HemizygouslyDeleted; - } else if (parser.isCnaHomozygouslyDeleted()) { - return GeneticTypeLevel.HomozygouslyDeleted; - } - } - return null; - } - - /** - * Determines if the gene X is mutated in case Y. - * - * @param gene gene symbol. - * @param caseId case Id. - * @return true or false. - */ - public boolean isMRNAWayUp(String gene, String caseId) { - ValueParser parser = getValueParser(gene, caseId); - if( null != parser ){ - return parser.isMRNAWayUp(); - } - return false; - } - - /** - * Determines if the gene X is mutated in case Y. - * - * @param gene gene symbol. - * @param caseId case Id. - * @return true or false. - */ - public boolean isMRNAWayDown(String gene, String caseId) { - ValueParser parser = getValueParser(gene, caseId); - if( null != parser ){ - return parser.isMRNAWayDown(); - } - return false; - } - - /** - * Gene percentage of cases where gene X is at a certain CNA level. - * - * @param gene gene symbol. - * @return percentage value. - */ - public double getPercentCasesWhereGeneIsAtCNALevel(String gene, GeneticTypeLevel cnaLevel) { - EnumMap map = geneCNALevelMap.get(gene); - if (map == null) { - map = new EnumMap(GeneticTypeLevel.class); - for (GeneticTypeLevel level : GeneticTypeLevel.values()) { - map.put(level, 0.0); - } - - ArrayList caseList = profileData.getCaseIdList(); - double delta = 1.0 / caseList.size(); - for (String caseId : caseList) { - GeneticTypeLevel level = getCNALevel(gene, caseId); - if (level!=null) { - map.put(level, map.get(level)+delta); - } - } - } - - return map.get(cnaLevel); - } - - /** - * Gene percentage of cases where gene X is up regulated. - * - * @param gene gene symbol. - * @return percentage value. - */ - public double getPercentCasesWhereMRNAIsUpRegulated(String gene) { - return getPercentCasesWhereMRNAIsUpOrDownRegulated(gene, true); - } - - /** - * Gene percentage of cases where gene X is down regulated. - * - * @param gene gene symbol. - * @return percentage value. - */ - public double getPercentCasesWhereMRNAIsDownRegulated(String gene) { - return getPercentCasesWhereMRNAIsUpOrDownRegulated(gene, false); - } - - - /** - * Gene percentage of cases where gene X is up/down regulated. - * - * @param gene gene symbol. - * @param upOrDown true if up regulated; false if down regulated. - * @return percentage value. - */ - private double getPercentCasesWhereMRNAIsUpOrDownRegulated(String gene, boolean up) { - if (geneMRNAUpDownMap.get(gene)==null) { - int numSamplesWhereGeneIsUpRegulated = 0; - int numSamplesWhereGeneIsDownRegulated = 0; - ArrayList caseList = profileData.getCaseIdList(); - for (String caseId : caseList) { - if (isMRNAWayUp(gene, caseId)) { - numSamplesWhereGeneIsUpRegulated++; - } else if (isMRNAWayDown(gene, caseId)) { - numSamplesWhereGeneIsDownRegulated++; - } - } - geneMRNAUpDownMap.put(gene, new double[]{ - 1.0*numSamplesWhereGeneIsUpRegulated/caseList.size(), - 1.0*numSamplesWhereGeneIsDownRegulated/caseList.size() - } - ); - } - - double[] percs = geneMRNAUpDownMap.get(gene); - return up ? percs[0] : percs[1]; - } - - - /** - * Gene percentage of cases where gene X is mutated. - * - * @param gene gene symbol. - * @return percentage value. - */ - public double getPercentCasesWhereGeneIsMutated(String gene) { - if (geneMutatedMap.get(gene)==null) { - int numSamplesWhereGeneIsMutated = 0; - ArrayList caseList = profileData.getCaseIdList(); - for (String caseId : caseList) { - if (isGeneMutated(gene, caseId)) { - numSamplesWhereGeneIsMutated++; - } - } - geneMutatedMap.put(gene, 1.0*numSamplesWhereGeneIsMutated/caseList.size()); - } - - return geneMutatedMap.get(gene); - } - - - /** - * Determines frequency with which each gene is altered. - */ - private ArrayList determineFrequencyOfGeneAlteration(ArrayList geneList, - ArrayList caseList) { - ArrayList localGeneList = new ArrayList(); - // First, determine frequency with which each gene is altered. - // Iterate through all genes. - for (String gene : geneList) { - int numSamplesWhereGeneIsAltered = 0; - - // Iterate through all cases. - for (String caseId : caseList) { - - // Determine if gene is altered in this case - boolean isAltered = isGeneAltered(gene, caseId); - - // If gene is altered in this case, increment counter. - if (isAltered) { - numSamplesWhereGeneIsAltered++; - } - } - double percent = numSamplesWhereGeneIsAltered / (double) caseList.size(); - geneAlteredMap.put(gene, percent); - numCasesAlteredMap.put(gene, numSamplesWhereGeneIsAltered); - GeneWithScore geneWithScore = new GeneWithScore(); - geneWithScore.setGene(gene); - geneWithScore.setScore(percent); - - if (this.theOncoPrintSpecification.containsGene(gene) ) { - // TODO: this isn't right, as the same gene could appear multiple times in a spec; - // thus, we need a more complex way to find the given gene - // for now, return the 1st one - GeneWithSpec aGeneWithSpec = this.theOncoPrintSpecification.getGeneWithSpec(gene); - geneWithScore.setaGeneWithSpec(aGeneWithSpec); - } - localGeneList.add(geneWithScore); - } - - // Sort genes, based on frequency of alteration. - Collections.sort(localGeneList, new GeneWithScoreComparator()); - return localGeneList; - } - - /** - * Determines frequency with which each case contains an alteration in at - * least one member of the gene set. - */ - private void determineFrequencyOfCaseAlteration() { - if (caseAlteredMap != null) { - return; - } - - caseAlteredMap = new HashMap(); - - numCasesAffected = 0; - - ArrayList caseList = profileData.getCaseIdList(); - ArrayList geneList = profileData.getGeneList(); - - // Iterate through all cases - for (String caseId : caseList) { - boolean caseIsAltered = false; - - // Iterate through all gene lists - for (String gene : geneList) { - boolean isAltered = isGeneAltered(gene, caseId); - if (isAltered) { - caseIsAltered = true; - } - } - if (caseIsAltered) { - numCasesAffected++; - } - caseAlteredMap.put(caseId, caseIsAltered); - } - - percentOfCasesWithAlteredPathway = numCasesAffected - / (double) caseList.size(); - } -} - -/** - * Ranks Genes based on score. - */ -class GeneWithScoreComparator implements Comparator { - - /** - * Ranks genes based on score. - * - * @param o0 GeneWithScore0 - * @param o1 GeneWithScore1 - * @return integer value. - */ - public int compare(Object o0, Object o1) { - GeneWithScore gene0 = (GeneWithScore) o0; - GeneWithScore gene1 = (GeneWithScore) o1; - double score0 = gene0.getScore(); - double score1 = gene1.getScore(); - if (score0 == score1) { - return gene0.getGene().compareTo(gene1.getGene()); - } else { - if (score0 < score1) { - return +1; - } else { - return -1; - } - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ProteinArrayData.java b/core/src/main/java/org/mskcc/cbio/portal/model/ProteinArrayData.java deleted file mode 100644 index b634115bfa0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ProteinArrayData.java +++ /dev/null @@ -1,85 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * class for protein array data - * @author jj - */ -public class ProteinArrayData { - private String arrayId; - private int cancerStudyId; - private int sampleId; - private double abundance; - - public ProteinArrayData(int cancerStudyId, String arrayId, int sampleId, double abundance) { - this.cancerStudyId = cancerStudyId; - this.arrayId = arrayId; - this.sampleId = sampleId; - this.abundance = abundance; - } - - public int getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public double getAbundance() { - return abundance; - } - - public void setAbundance(double abundance) { - this.abundance = abundance; - } - - public String getArrayId() { - return arrayId; - } - - public void setArrayId(String arrayId) { - this.arrayId = arrayId; - } - - public int getSampleId() { - return sampleId; - } - - public void setSampleId(int sampleId) { - this.sampleId = sampleId; - } - - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ProteinArrayInfo.java b/core/src/main/java/org/mskcc/cbio/portal/model/ProteinArrayInfo.java deleted file mode 100644 index d70c8531114..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ProteinArrayInfo.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.Collections; -import java.util.Set; - -/** - * Class for protein array information - * @author jj - */ -public class ProteinArrayInfo { - private String id; - private String type; - private String gene; - private String residue; - private Set cancerStudies; - - public ProteinArrayInfo(String id, String type, String gene, - String residue, Set cancerStudies) { - this.id = id; - this.type = type; - this.gene = gene; - this.residue = residue; - this.cancerStudies = cancerStudies; - } - - public String getGene() { - return gene; - } - - public void setGene(String gene) { - this.gene = gene; - } - - public String getResidue() { - return residue; - } - - public void setResidue(String residue) { - this.residue = residue; - } - - public String getId() { - return id; - } - - public void setId(String id) { - this.id = id; - } - - public String getType() { - return type; - } - - public void setType(String type) { - this.type = type; - } - - public Set getCancerStudies() { - if (cancerStudies==null) { - return Collections.emptySet(); - } - return cancerStudies; - } - - public void setCancerStudies(Set cancerStudies) { - this.cancerStudies = cancerStudies; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ReferenceGenome.java b/core/src/main/java/org/mskcc/cbio/portal/model/ReferenceGenome.java deleted file mode 100644 index 0d58cd09bab..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ReferenceGenome.java +++ /dev/null @@ -1,178 +0,0 @@ -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.model; - -import java.math.BigInteger; -import java.util.Date; -import org.mskcc.cbio.portal.util.*; - -/** - * This represents the reference genome used by molecular profiling - * - * @author Kelsey Zhu - */ -public class ReferenceGenome { - - private int referenceGenomeId; // assigned by DB, auto increment sequence number - private String genomeName; - private String species; - private String buildName; //genome assembly name - private long genomeSize; //non-N bases - private String url; - private Date releaseDate; - public static String HOMO_SAPIENS = "human"; - public static String MUS_MUSCULUS = "mouse"; - public static String HOMO_SAPIENS_DEFAULT_GENOME_BUILD = "GRCh37"; - public static String HOMO_SAPIENS_DEFAULT_GENOME_NAME = "hg19"; - public static String MUS_MUSCULUS_DEFAULT_GENOME_BUILD = "GRCm38"; - public static String HOMO_SAPIENS_DEFAULT_GENOME_BUILD_PREFIX = "GRCh"; - public static String MUS_MUSCULUS_DEFAULT_GENOME_BUILD_PREFIX = "GRCm"; - - /** - * Constructor. - * @param genomeName Name of the reference genome. - * @param species Species of the reference genome. - * @param buildName Name of genome assembly - */ - public ReferenceGenome(String genomeName, String species, String buildName) { - super(); - this.genomeName = genomeName; - this.species = species; - this.buildName = buildName; - } - - /** - * Constructor. - * @param genomeName Name of the reference genome. - * @param species Species of the reference genome. - * @param buildName Name of genome assembly - * @param genomeSize Effective genome size - * @param url URL to download reference genome - * @param releaseDate Date genome assembly released - */ - public ReferenceGenome(String genomeName, String species, String buildName, - Long genomeSize, String url, Date releaseDate) { - super(); - this.genomeName = genomeName; - this.species = species; - this.buildName = buildName; - this.genomeSize = genomeSize; - this.url = url; - this.releaseDate = releaseDate; - } - - public void setReferenceGenomeId(int referenceGenomeId) { - this.referenceGenomeId = referenceGenomeId; - } - - public int getReferenceGenomeId() { - return referenceGenomeId; - } - - public void setGenomeName(String genomeName) { - this.genomeName = genomeName; - } - - public String getGenomeName() { - return this.genomeName; - } - - public void setSpecies(String species) { - this.species = species; - } - - public String getSpecies() { - return this.species; - } - - public void setBuildName(String buildName) { - this.buildName = buildName; - } - - public String getBuildName () { - return this.buildName; - } - - public void setGenomeSize(long genomeSize) { - this.genomeSize = genomeSize; - } - - public long getGenomeSize() { - return this.genomeSize; - } - - public void setUrl(String url) { - this.url = url; - } - - public String getUrl() { - return this.url; - } - - public void setReleaseDate(Date releaseDate) { - this.releaseDate = releaseDate; - } - - public Date getReleaseDate() { - return this.releaseDate; - } - - /** - * Equals. - * @param otherReferenceGenome Other Reference Genome. - * @return true of false. - */ - @Override - public boolean equals(Object otherReferenceGenome) { - if (this == otherReferenceGenome) { - return true; - } - - if (!(otherReferenceGenome instanceof ReferenceGenome)) { - return false; - } - - ReferenceGenome that = (ReferenceGenome) otherReferenceGenome; - return - EqualsUtil.areEqual(this.genomeName, that.genomeName) && - EqualsUtil.areEqual(this.species, - that.species) && - EqualsUtil.areEqual(this.buildName, that.buildName); - } - - @Override - public int hashCode() { - int result = 3; - result = 31 * result + this.referenceGenomeId; - result = 31 * result + (this.genomeName != null ? this.genomeName.hashCode() : 0); - result = 31 * result + (this.buildName != null ? this.buildName.hashCode() : 0); - result = 31 * result + (this.species != null ? this.species.hashCode() : 0); - return result; - } - - /** - * toString() Override. - * @return string summary of reference genome - */ - @Override - public String toString() { - return "Reference Genome [referenceGenomeID=" + referenceGenomeId + ", genomeName=" + genomeName + ", species=" - + species + ", buildName=" + buildName + "]"; - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ReferenceGenomeGene.java b/core/src/main/java/org/mskcc/cbio/portal/model/ReferenceGenomeGene.java deleted file mode 100644 index a0071db3972..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ReferenceGenomeGene.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ -package org.mskcc.cbio.portal.model; -/** - * Class to wrap Reference Genome Gene. - * @author Kelsey Zhu - */ -public class ReferenceGenomeGene { - private int referenceGenomeId; - private long entrezGeneId; - private String chr; - private String cytoband; - private long start; - private long end; - - /** - * - * @param entrezGeneId ENTREZ_GENE_ID - * @param referenceGenomeId REFERENCE_GENOME_ID - */ - public ReferenceGenomeGene(long entrezGeneId, int referenceGenomeId) { - this.entrezGeneId = entrezGeneId; - this.referenceGenomeId = referenceGenomeId; - } - - /** - * - * @param referenceGenomeId REFERENCE_GENOME_ID - * @param chr Chromosome name - * @param cytoband CYTOBAND of the gene - * @param start start point of the gene - * @param end end point of the gene - */ - public ReferenceGenomeGene(long entrezGeneId, int referenceGenomeId, String chr, - String cytoband, long start, long end) { - - this.referenceGenomeId = referenceGenomeId; - this.entrezGeneId = entrezGeneId; - this.chr = chr; - this.cytoband = cytoband; - this.start = start; - this.end = end; - } - - - public void setReferenceGenomeId(int referenceGenomeId) { - this.referenceGenomeId = referenceGenomeId; - } - - public int getReferenceGenomeId() { - return referenceGenomeId; - } - - public void setEntrezGeneId(long entrezGeneId) { - this.entrezGeneId = entrezGeneId; - } - - public long getEntrezGeneId() { - return entrezGeneId; - } - - public String getChr() { - return chr; - } - - public void setChr(String chr) { - this.chr = chr; - } - public String getCytoband() { - return cytoband; - } - - public void setCytoband(String cytoband) { - this.cytoband = cytoband; - } - - public long getStart() { - return this.start; - } - - public void setStart(long start) { - this.start = start; - } - - public long getEnd() { - return this.end = end; - } - - public void setEnd(long end) { - this.end = end; - } - - @Override - public boolean equals(Object obj0) { - if (!(obj0 instanceof ReferenceGenomeGene)) { - return false; - } - - ReferenceGenomeGene gene0 = (ReferenceGenomeGene) obj0; - if (gene0.entrezGeneId == entrezGeneId && gene0.referenceGenomeId == referenceGenomeId) { - return true; - } - return false; - } - - @Override - public int hashCode() { - int result = 2; - result = 31 * result + (int)this.entrezGeneId; - result = 31 * result + this.referenceGenomeId; - return result; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ResourceBaseData.java b/core/src/main/java/org/mskcc/cbio/portal/model/ResourceBaseData.java deleted file mode 100644 index 27f4ebc460d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ResourceBaseData.java +++ /dev/null @@ -1,70 +0,0 @@ -package org.mskcc.cbio.portal.model; - -/** - * Encapsulates Resource Base Data. - */ -public class ResourceBaseData { - private int cancerStudyId; - private String stableId; - private String resourceId; - private String url; - - /** - * Constructor - */ - public ResourceBaseData() { - this(-1, "", "", ""); - } - - /** - * Constructor - * - * @param cancerStudyId database id of cancer study - * @param stableId stable id of the patient or sample or study - * @param resourceId resource id - * @param url url of the resource - */ - - public ResourceBaseData(int cancerStudyId, String stableId, String resourceId, String url) { - this.setCancerStudyId(cancerStudyId); - this.setStableId(stableId); - this.setResourceId(resourceId); - this.setUrl(url); - } - - public ResourceBaseData(ResourceBaseData other) { - this(other.getCancerStudyId(), other.getStableId(), other.getResourceId(), other.getUrl()); - } - - public int getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public String getResourceId() { - return resourceId; - } - - public void setResourceId(String resourceId) { - this.resourceId = resourceId; - } - - public String getUrl() { - return url; - } - - public void setUrl(String url) { - this.url = url; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/ResourceDefinition.java b/core/src/main/java/org/mskcc/cbio/portal/model/ResourceDefinition.java deleted file mode 100644 index e51ff9dd934..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/ResourceDefinition.java +++ /dev/null @@ -1,79 +0,0 @@ -package org.mskcc.cbio.portal.model; - -import org.cbioportal.model.ResourceType; - -public class ResourceDefinition { - - private String resourceId; - private String displayName; - private String description; - private ResourceType resourceType; - private boolean openByDefault; - private Integer priority; - private Integer cancerStudyId; - - public ResourceDefinition(String resourceId, String displayName, - String description, ResourceType resourceType, boolean openByDefault, Integer priority, Integer cancerStudyId) { - this.resourceId = resourceId; - this.displayName = displayName; - this.description = description; - this.resourceType = resourceType; - this.openByDefault = openByDefault; - this.priority = priority; - this.cancerStudyId = cancerStudyId; - } - - public String getResourceId() { - return resourceId; - } - - public void setResourceId(String resourceId) { - this.resourceId = resourceId; - } - - public String getDisplayName() { - return displayName; - } - - public void setDisplayName(String displayName) { - this.displayName = displayName; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public ResourceType getResourceType() { - return resourceType; - } - - public void setResourceType(ResourceType resourceType) { - this.resourceType = resourceType; - } - - public boolean isOpenByDefault() { - return openByDefault; - } - - public void setOpenByDefault(boolean openByDefault) { - this.openByDefault = openByDefault; - } - - public Integer getPriority() { - return priority; - } - - public void setPriority(Integer priority) { - this.priority = priority; - } - public Integer getCancerStudyId() { - return cancerStudyId; - } - public void setCancerStudyId(Integer cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/Sample.java b/core/src/main/java/org/mskcc/cbio/portal/model/Sample.java deleted file mode 100644 index 9344eb45cf4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/Sample.java +++ /dev/null @@ -1,152 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.EnumSet; -import java.util.Set; -import org.mskcc.cbio.portal.util.StableIdUtil; - -import java.util.regex.*; - -/** - * Encapsulates Sample Data. - * - * @author Benjamin Gross - */ -public class Sample { - - public static enum Type - { - PRIMARY_SOLID_TUMOR("Primary Solid Tumor"), - RECURRENT_SOLID_TUMOR("Recurrent Solid Tumor"), - PRIMARY_BLOOD_TUMOR("Primary Blood Tumor"), - RECURRENT_BLOOD_TUMOR("Recurrent Blood Tumor"), - METASTATIC("Metastatic"), - BLOOD_DERIVED_NORMAL("Blood Derived Normal"), - SOLID_TISSUES_NORMAL("Solid Tissues Normal"); - - private String propertyName; - - Type(String propertyName) { this.propertyName = propertyName; } - public String toString() { return propertyName; } - public boolean isNormal() { return this==BLOOD_DERIVED_NORMAL || this==SOLID_TISSUES_NORMAL; } - public static Set normalTypes() { return EnumSet.of(BLOOD_DERIVED_NORMAL, SOLID_TISSUES_NORMAL); } - - static public boolean has(String value) - { - if (value == null) return false; - try { - return valueOf(value.toUpperCase()) != null; - } - catch (IllegalArgumentException x) { - return false; - } - } - } - - private int internalId; - private String stableId; - private Type sampleType; - private int internalPatientId; - - public Sample(String stableId, int internalPatientId, String sampleType) - { - this(stableId, internalPatientId); - this.sampleType = getType(stableId, sampleType); - } - - public Sample(int internalId, String stableId, int internalPatientId) - { - this(stableId, internalPatientId); - this.internalId = internalId; - } - - public Sample(String stableId, int internalPatientId) - { - this.stableId = stableId; - this.sampleType = getType(stableId, null); - this.internalPatientId = internalPatientId; - } - - private Type getType(String stableId, String sampleType) - { - Matcher tcgaSampleBarcodeMatcher = StableIdUtil.TCGA_SAMPLE_TYPE_BARCODE_REGEX.matcher(stableId); - if (tcgaSampleBarcodeMatcher.find()) { - return StableIdUtil.getTypeByTCGACode(tcgaSampleBarcodeMatcher.group(1)); - } - else if (sampleType != null && Type.has(sampleType)) { - return Type.valueOf(sampleType.toUpperCase()); - } - else { - return Type.PRIMARY_SOLID_TUMOR; - } - } - - public int getInternalId() - { - return internalId; - } - - public String getStableId() - { - return stableId; - } - - public Type getType() - { - return sampleType; - } - - public int getInternalPatientId() - { - return internalPatientId; - } - - - @Override - public boolean equals(Object obj) { - if (!(obj instanceof Sample)) { - return false; - } - - Sample anotherSample = (Sample)obj; - return (this.internalId == anotherSample.getInternalId()); - } - - @Override - public int hashCode() { - int hash = 3; - hash = 41 * hash + (this.stableId != null ? this.stableId.hashCode() : 0); - return hash; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/SampleList.java b/core/src/main/java/org/mskcc/cbio/portal/model/SampleList.java deleted file mode 100644 index b2954e104e4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/SampleList.java +++ /dev/null @@ -1,153 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -// imports -import java.util.ArrayList; - -/** - * Class to store information of patient list. - */ -public class SampleList { - private String stableId; - private int sampleListId; - private int cancerStudyId; - private String name; - private String description; - private SampleListCategory sampleListCategory; - private ArrayList sampleList; - - public SampleList() { - super(); - } - - /** - * A constructor for all the NON NULL fields in a sample_list - * @param stableId - * @param sampleListId - * @param cancerStudyId - * @param name - */ - public SampleList(String stableId, int sampleListId, int cancerStudyId, String name, - SampleListCategory sampleListCategory) { - super(); - this.stableId = stableId; - this.sampleListId = sampleListId; - this.cancerStudyId = cancerStudyId; - this.name = name; - this.sampleListCategory = sampleListCategory; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public int getSampleListId() { - return sampleListId; - } - - public void setSampleListId(int sampleListId) { - this.sampleListId = sampleListId; - } - - public int getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId( int cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public SampleListCategory getSampleListCategory() { - return sampleListCategory; - } - - public void setSampleListCategory(SampleListCategory sampleListCategory) { - this.sampleListCategory = sampleListCategory; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public ArrayList getSampleList() { - return sampleList; - } - - public void setSampleList(ArrayList sampleList) { - this.sampleList = sampleList; - } - - @Override - public String toString() { - return this.getClass().getName() + "{" - + "stableId " + this.stableId - + ", sampleListId " + this.sampleListId - + ", sampleListId " + this.cancerStudyId - + ", name " + this.name - + ", description " + this.description - + ", SampleListCategory " + this.sampleListCategory - + ", sampleList " + this.sampleList - + "}"; - } - - - /** - * Gets list of all patient IDs in the set as one string. - * - * @return space-delimited list of patient IDs. - */ - public String getSampleListAsString() { - StringBuilder str = new StringBuilder(); - for (String patientId : sampleList) { - str.append(patientId).append(" "); - } - return str.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/SampleListCategory.java b/core/src/main/java/org/mskcc/cbio/portal/model/SampleListCategory.java deleted file mode 100644 index e6bb7e26cb8..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/SampleListCategory.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.EnumSet; -import java.util.HashMap; -import java.util.Map; - -/** - * Enumeration for Patient List Controlled Vocabulary (CV) Category. - */ -public enum SampleListCategory { - ALL_CASES_IN_STUDY("all_cases_in_study"), - ALL_CASES_WITH_MUTATION_DATA("all_cases_with_mutation_data"), - ALL_CASES_WITH_CNA_DATA("all_cases_with_cna_data"), - ALL_CASES_WITH_LOG2_CNA_DNA("all_cases_with_log2_cna_data"), - ALL_CASES_WITH_METHYLATION_DATA("all_cases_with_methylation_data"), - ALL_CASES_WITH_MRNA_ARRAY_DATA("all_cases_with_mrna_array_data"), - ALL_CASES_WITH_MRNA_RNA_SEQ_DATA("all_cases_with_mrna_rnaseq_data"), - ALL_CASES_WITH_RPPA_DATA("all_cases_with_rppa_data"), - ALL_CASES_WITH_MICRO_RNA_DATA("all_cases_with_microrna_data"), - ALL_CASES_WITH_MUTATION_AND_CNA_DATA("all_cases_with_mutation_and_cna_data"), - ALL_CASES_WITH_MUTATION_AND_CNA_AND_MRNA_DATA("all_cases_with_mutation_and_cna_and_mrna_data"), - ALL_CASES_WITH_GSVA_DATA("all_cases_with_gsva_data"), - ALL_CASES_WITH_SV_DATA("all_cases_with_sv_data"), - OTHER("other"); - - // Init the look up map. - private static final Map lookup - = new HashMap(); - - static { - for(SampleListCategory c : EnumSet.allOf(SampleListCategory.class)) { - lookup.put(c.getCategory(), c); - } - } - - private String category; - - private SampleListCategory(String category) { - this.category = category; - } - - public String getCategory() { return category; } - - /** - * Gets the matching category by category name. - * @param category category name. - * @return SampleListCategory Object. - */ - public static SampleListCategory get(String category) { - SampleListCategory match = lookup.get(category); - if (match != null) { - return match; - } else { - StringBuffer validOptions = new StringBuffer(); - for(SampleListCategory c : EnumSet.allOf(SampleListCategory.class)) { - validOptions.append(c.getCategory() + ", "); - } - String validStr = validOptions.substring(0, validOptions.length()-2) + "."; - throw new IllegalArgumentException("Invalid Patient List Category: " + category - + ". Valid options are: " + validStr); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/SangerCancerGene.java b/core/src/main/java/org/mskcc/cbio/portal/model/SangerCancerGene.java deleted file mode 100644 index 4a68b317fd9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/SangerCancerGene.java +++ /dev/null @@ -1,173 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.HashMap; -import java.util.ArrayList; - -/** - * Encapsulates a Gene from the Sanger Cancer Gene Census. - * - */ -public class SangerCancerGene { - private CanonicalGene gene; - private boolean cancerSomaticMutation; - private boolean cancerGermlineMutation; - private String tumorTypesSomaticMutation; - private String tumorTypesGermlineMutation; - private String cancerSyndrome; - private String tissueType; - private String mutationType; - private String translocationPartner; - private boolean otherGermlineMut; - private String otherDisease; - - public CanonicalGene getGene() { - return gene; - } - - public void setGene(CanonicalGene gene) { - this.gene = gene; - } - - public boolean isCancerSomaticMutation() { - return cancerSomaticMutation; - } - - public void setCancerSomaticMutation(boolean cancerSomaticMutation) { - this.cancerSomaticMutation = cancerSomaticMutation; - } - - public boolean isCancerGermlineMutation() { - return cancerGermlineMutation; - } - - public void setCancerGermlineMutation(boolean cancerGermlineMutation) { - this.cancerGermlineMutation = cancerGermlineMutation; - } - - public String getTumorTypesSomaticMutation() { - return tumorTypesSomaticMutation; - } - - public ArrayList getTumorTypesSomaticMutationList() { - return extractParts(tumorTypesSomaticMutation); - } - - public void setTumorTypesSomaticMutation(String tumorTypesSomaticMutation) { - this.tumorTypesSomaticMutation = tumorTypesSomaticMutation; - } - - public String getTumorTypesGermlineMutation() { - return tumorTypesGermlineMutation; - } - - public ArrayList getTumorTypesGermlineMutationList() { - return extractParts(tumorTypesGermlineMutation); - } - - public void setTumorTypesGermlineMutation(String tumorTypesGermlineMutation) { - this.tumorTypesGermlineMutation = tumorTypesGermlineMutation; - } - - public String getCancerSyndrome() { - return cancerSyndrome; - } - - public void setCancerSyndrome(String cancerSyndrome) { - this.cancerSyndrome = cancerSyndrome; - } - - public String getTissueType() { - return tissueType; - } - - public ArrayList getTissueTypeList() { - return extractParts(tissueType); - } - - public void setTissueType(String tissueType) { - this.tissueType = tissueType; - } - - public String getMutationType() { - return mutationType; - } - - public ArrayList getMutationTypeList() { - return extractParts(mutationType); - } - - public void setMutationType(String mutationType) { - this.mutationType = mutationType; - } - - public String getTranslocationPartner() { - return translocationPartner; - } - - public void setTranslocationPartner(String translocationPartner) { - this.translocationPartner = translocationPartner; - } - - public boolean getOtherGermlineMut() { - return otherGermlineMut; - } - - public void setOtherGermlineMut(boolean otherGermlineMut) { - this.otherGermlineMut = otherGermlineMut; - } - - public String getOtherDisease() { - return otherDisease; - } - - public void setOtherDisease(String otherDisease) { - this.otherDisease = otherDisease; - } - - private ArrayList extractParts(String target) { - String parts[] = target.split(","); - SangerCancerGeneAbbreviationMap abbrevMap = SangerCancerGeneAbbreviationMap.getInstance(); - ArrayList partList = new ArrayList(); - for (String part: parts) { - String translation = abbrevMap.getTranslation(part.trim()); - if (translation != null) { - partList.add(translation); - } else { - partList.add(part); - } - } - return partList; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/SangerCancerGeneAbbreviationMap.java b/core/src/main/java/org/mskcc/cbio/portal/model/SangerCancerGeneAbbreviationMap.java deleted file mode 100644 index 5b2351de0bf..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/SangerCancerGeneAbbreviationMap.java +++ /dev/null @@ -1,107 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.HashMap; - -/** - * Abbreviation Map for the Sanger Cancer Gene Census. - */ -public class SangerCancerGeneAbbreviationMap { - private HashMap abbreviationMap = new HashMap(); - private static SangerCancerGeneAbbreviationMap instance; - - public static SangerCancerGeneAbbreviationMap getInstance() { - if (instance == null) { - instance = new SangerCancerGeneAbbreviationMap(); - } - return instance; - } - - public String getTranslation(String abbreviation) { - return abbreviationMap.get(abbreviation); - } - - private SangerCancerGeneAbbreviationMap () { - initMap(); - } - - private void initMap() { - abbreviationMap.put("A", "amplification"); - abbreviationMap.put("AEL", "acute eosinophilic leukemia"); - abbreviationMap.put("AL", "acute leukemia"); - abbreviationMap.put("ALCL", "anaplastic large-cell lymphoma"); - abbreviationMap.put("ALL", "acute lymphocytic leukemia"); - abbreviationMap.put("AML", "acute myelogenous leukemia"); - abbreviationMap.put("AML*", "acute myelogenous leukemia (primarily treatment associated)"); - abbreviationMap.put("APL", "acute promyelocytic leukemia"); - abbreviationMap.put("B-ALL", "B-cell acute lymphocytic leukaemia"); - abbreviationMap.put("B-CLL", "B-cell Lymphocytic leukemia"); - abbreviationMap.put("B-NHL", "B-cell Non-Hodgkin Lymphoma"); - abbreviationMap.put("CLL", "chronic lymphatic leukemia"); - abbreviationMap.put("CML", "chronic myeloid leukemia"); - abbreviationMap.put("CMML", "chronic myelomonocytic leukemia"); - abbreviationMap.put("CNS", "central nervous system"); - abbreviationMap.put("D", "large deletion"); - abbreviationMap.put("DFSP", "dermatofibrosarcoma protuberans"); - abbreviationMap.put("DLBCL", "diffuse large B-cell lymphoma"); - abbreviationMap.put("DLCL", "diffuse large-cell lymphoma"); - abbreviationMap.put("Dom", "dominant"); - abbreviationMap.put("E", "epithelial"); - abbreviationMap.put("F", "frameshift"); - abbreviationMap.put("GIST", "gastrointestinal stromal tumour"); - abbreviationMap.put("JMML", "juvenile myelomonocytic leukemia"); - abbreviationMap.put("L", "leukaemia/lymphoma"); - abbreviationMap.put("M", "mesenchymal"); - abbreviationMap.put("MALT", "mucosa-associated lymphoid tissue lymphoma"); - abbreviationMap.put("MDS", "myelodysplastic syndrome"); - abbreviationMap.put("Mis", "missense"); - abbreviationMap.put("MLCLS", "mediastinal large cell lymphoma with sclerosis"); - abbreviationMap.put("MM", "multiple myeloma"); - abbreviationMap.put("MPD", "Myeloproliferative disorder"); - abbreviationMap.put("N", "nonsense"); - abbreviationMap.put("NHL", "non-Hodgkin lymphoma"); - abbreviationMap.put("NK/T", "natural killer T cell"); - abbreviationMap.put("NSCLC", "non small cell lung cancer"); - abbreviationMap.put("O", "other"); - abbreviationMap.put("PMBL", "primary mediastinal B-cell lymphoma"); - abbreviationMap.put("pre-B All", "pre-B-cell acute lymphoblastic leukaemia"); - abbreviationMap.put("Rec", "reccesive"); - abbreviationMap.put("S", "splice site"); - abbreviationMap.put("T", "translocation"); - abbreviationMap.put("T-ALL", "T-cell acute lymphoblastic leukemia"); - abbreviationMap.put("T-CLL", "T-cell chronic lymphocytic leukaemia"); - abbreviationMap.put("TGCT", "testicular germ cell tumour"); - abbreviationMap.put("T-PLL", "T cell prolymphocytic leukaemia"); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/SetOfGenes.java b/core/src/main/java/org/mskcc/cbio/portal/model/SetOfGenes.java deleted file mode 100644 index e0d00b81383..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/SetOfGenes.java +++ /dev/null @@ -1,88 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -/** - * Encapsulates a set of genes. - */ -public class SetOfGenes { - private String name; - private String geneList; - - /** - * Gets the name of the gene set. - * - * @return gene set name. - */ - public String getName() { - return name; - } - - /** - * Gets the alpha-numeric ID of the gene set. - * - * @return alpha-numeric ID of gene set. - */ - public String getId() { - String id = name.replaceAll(" ", "-"); - id = id.replaceAll("_", "-"); - return id.toLowerCase(); - } - - /** - * Sets the name of the gene set. - * - * @param name gene set name. - */ - public void setName(String name) { - this.name = name; - } - - /** - * Gets the List of Genes in the Set. - * - * @return whitespace delimited list of gene symbols. - */ - public String getGeneList() { - return geneList; - } - - /** - * Sets the List of Genes in the Set. - * - * @param geneList whitespace delimited list of gene symbols. - */ - public void setGeneList(String geneList) { - this.geneList = geneList; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/StructuralVariant.java b/core/src/main/java/org/mskcc/cbio/portal/model/StructuralVariant.java deleted file mode 100644 index 89c8352dea0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/StructuralVariant.java +++ /dev/null @@ -1,471 +0,0 @@ -/* - * Copyright (c) 2018 - 2022 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.model; - -/* This class is used only in connection with the core scripts package - * importer. The core API provides no structural variant data services. - * Additionally, there are some members of this class which are not - * populated when retrieving records from the database during a call to - * DaoStructuralVariant.getAllStructuralVariants(), a method which is - * only used for unit testing. The following members are here only for - * convenient passing of values between StructuralVariantUtil and - * ImportStructuralVariantData and are not populated otherwise: - * sampleId, site1HugoSymbol, site1HugoSymbol. - * The member internalId is only used during import. - * The member structuralVariantId is used nowhere. - */ -public class StructuralVariant { - private long internalId; // warning : see comment above - private int geneticProfileId; - private long structuralVariantId; // warning : see comment above - private int sampleIdInternal; - private String sampleId; // warning : see comment above - private Long site1EntrezGeneId; - private String site1HugoSymbol; // warning : see comment above - private String site1EnsemblTranscriptId; - private String site1Chromosome; - private int site1Position; - private String site1Contig; - private String site1Region; - private Integer site1RegionNumber; - private String site1Description; - private Long site2EntrezGeneId; - private String site2HugoSymbol; // warning : see comment above - private String site2EnsemblTranscriptId; - private String site2Chromosome; - private int site2Position; - private String site2Contig; - private String site2Region; - private Integer site2RegionNumber; - private String site2Description; - private String site2EffectOnFrame; - private String ncbiBuild; - private String dnaSupport; - private String rnaSupport; - private int normalReadCount; - private int tumorReadCount; - private int normalVariantCount; - private int tumorVariantCount; - private int normalPairedEndReadCount; - private int tumorPairedEndReadCount; - private int normalSplitReadCount; - private int tumorSplitReadCount; - private String annotation; - private String breakpointType; - private String connectionType; - private String eventInfo; - private String variantClass; - private int length; - private String comments; - private String svStatus; - private String driverFilter; - private String driverFilterAnn; - private String driverTiersFilter; - private String driverTiersFilterAnn; - private String annotationJson; - - public long getInternalId() { - return internalId; - } - - public void setInternalId(long internalId) { - this.internalId = internalId; - } - - public int getGeneticProfileId() { - return geneticProfileId; - } - - public void setGeneticProfileId(int geneticProfileId) { - this.geneticProfileId = geneticProfileId; - } - - public long getStructuralVariantId() { - return structuralVariantId; - } - - public void setStructuralVariantId(long structuralVariantId) { - this.structuralVariantId = structuralVariantId; - } - - public int getSampleIdInternal() { - return sampleIdInternal; - } - - public void setSampleIdInternal(int sampleId) { - this.sampleIdInternal = sampleId; - } - - public String getSampleId() { - return sampleId; - } - - public void setSampleId(String tumorSampleBarcode) { - this.sampleId = tumorSampleBarcode; - } - - public Long getSite1EntrezGeneId() { - return site1EntrezGeneId; - } - - public void setSite1EntrezGeneId(Long site1EntrezGeneId) { - this.site1EntrezGeneId = site1EntrezGeneId; - } - - public String getSite1HugoSymbol() { - return site1HugoSymbol; - } - - public void setSite1HugoSymbol(String site1HugoSymbol) { - this.site1HugoSymbol = site1HugoSymbol; - } - - public String getSite1EnsemblTranscriptId() { - return site1EnsemblTranscriptId; - } - - public void setSite1EnsemblTranscriptId(String site1TranscriptId) { - this.site1EnsemblTranscriptId = site1TranscriptId; - } - - public String getSite1Chromosome() { - return site1Chromosome; - } - - public void setSite1Chromosome(String site1Chrom) { - this.site1Chromosome = site1Chrom; - } - - public int getSite1Position() { - return site1Position; - } - - public void setSite1Position(int site1Pos) { - this.site1Position = site1Pos; - } - - public String getSite1Description() { - return site1Description; - } - - public void setSite1Description(String site1Desc) { - this.site1Description = site1Desc; - } - - public Long getSite2EntrezGeneId() { - return site2EntrezGeneId; - } - - public void setSite2EntrezGeneId(Long site2EntrezGeneId) { - this.site2EntrezGeneId = site2EntrezGeneId; - } - - public String getSite2HugoSymbol() { - return site2HugoSymbol; - } - - public void setSite2HugoSymbol(String site2HugoSymbol) { - this.site2HugoSymbol = site2HugoSymbol; - } - - public String getSite2EnsemblTranscriptId() { - return site2EnsemblTranscriptId; - } - - public void setSite2EnsemblTranscriptId(String site2TranscriptId) { - this.site2EnsemblTranscriptId = site2TranscriptId; - } - - public String getSite2Chromosome() { - return site2Chromosome; - } - - public void setSite2Chromosome(String site2Chrom) { - this.site2Chromosome = site2Chrom; - } - - public int getSite2Position() { - return site2Position; - } - - public void setSite2Position(int site2Pos) { - this.site2Position = site2Pos; - } - - public String getSite2Description() { - return site2Description; - } - - public void setSite2Description(String site2Desc) { - this.site2Description = site2Desc; - } - - public String getSite2EffectOnFrame() { - return site2EffectOnFrame; - } - - public void setSite2EffectOnFrame(String site2EffectOnFrame) { - this.site2EffectOnFrame = site2EffectOnFrame; - } - - public String getNcbiBuild() { - return ncbiBuild; - } - - public void setNcbiBuild(String ncbiBuild) { - this.ncbiBuild = ncbiBuild; - } - - public String getDnaSupport() { - return dnaSupport; - } - - public void setDnaSupport(String dnaSupport) { - this.dnaSupport = dnaSupport; - } - - public String getRnaSupport() { - return rnaSupport; - } - - public void setRnaSupport(String rnaSupport) { - this.rnaSupport = rnaSupport; - } - - public int getNormalReadCount() { - return normalReadCount; - } - - public void setNormalReadCount(int normalReadCount) { - this.normalReadCount = normalReadCount; - } - - public int getTumorReadCount() { - return tumorReadCount; - } - - public void setTumorReadCount(int tumorReadCount) { - this.tumorReadCount = tumorReadCount; - } - - public int getNormalVariantCount() { - return normalVariantCount; - } - - public void setNormalVariantCount(int normalVariantCount) { - this.normalVariantCount = normalVariantCount; - } - - public int getTumorVariantCount() { - return tumorVariantCount; - } - - public void setTumorVariantCount(int tumorVariantCount) { - this.tumorVariantCount = tumorVariantCount; - } - - public int getNormalPairedEndReadCount() { - return normalPairedEndReadCount; - } - - public void setNormalPairedEndReadCount(int normalPairedEndReadCount) { - this.normalPairedEndReadCount = normalPairedEndReadCount; - } - - public int getTumorPairedEndReadCount() { - return tumorPairedEndReadCount; - } - - public void setTumorPairedEndReadCount(int tumorPairedEndReadCount) { - this.tumorPairedEndReadCount = tumorPairedEndReadCount; - } - - public int getNormalSplitReadCount() { - return normalSplitReadCount; - } - - public void setNormalSplitReadCount(int normalSplitReadCount) { - this.normalSplitReadCount = normalSplitReadCount; - } - - public int getTumorSplitReadCount() { - return tumorSplitReadCount; - } - - public void setTumorSplitReadCount(int tumorSplitReadCount) { - this.tumorSplitReadCount = tumorSplitReadCount; - } - - public String getAnnotation() { - return annotation; - } - - public void setAnnotation(String annotation) { - this.annotation = annotation; - } - - public String getBreakpointType() { - return breakpointType; - } - - public void setBreakpointType(String breakpointType) { - this.breakpointType = breakpointType; - } - - public String getConnectionType() { - return connectionType; - } - - public void setConnectionType(String connectionType) { - this.connectionType = connectionType; - } - - public String getEventInfo() { - return eventInfo; - } - - public void setEventInfo(String eventInfo) { - this.eventInfo = eventInfo; - } - - public String getVariantClass() { - return variantClass; - } - - public void setVariantClass(String variantClass) { - this.variantClass = variantClass; - } - - public int getLength() { - return length; - } - - public void setLength(int length) { - this.length = length; - } - - public String getComments() { - return comments; - } - - public void setComments(String comments) { - this.comments = comments; - } - - public String getSvStatus() { - return svStatus; - } - - public void setSvStatus(String svStatus) { - this.svStatus = svStatus; - } - - public String getSite1Contig() { - return site1Contig; - } - - public void setSite1Contig(String site1Contig) { - this.site1Contig = site1Contig; - } - - public String getSite1Region() { - return site1Region; - } - - public void setSite1Region(String site1Region) { - this.site1Region = site1Region; - } - - public Integer getSite1RegionNumber() { - return site1RegionNumber; - } - - public void setSite1RegionNumber(Integer site1RegionNumber) { - this.site1RegionNumber = site1RegionNumber; - } - - public String getSite2Contig() { - return site2Contig; - } - - public void setSite2Contig(String site2Contig) { - this.site2Contig = site2Contig; - } - - public String getSite2Region() { - return site2Region; - } - - public void setSite2Region(String site2Region) { - this.site2Region = site2Region; - } - - public Integer getSite2RegionNumber() { - return site2RegionNumber; - } - - public void setSite2RegionNumber(Integer site2RegionNumber) { - this.site2RegionNumber = site2RegionNumber; - } - - public String getDriverFilter() { - return driverFilter; - } - - public void setDriverFilter(String driverFilter) { - this.driverFilter = driverFilter; - } - - public String getDriverFilterAnn() { - return driverFilterAnn; - } - - public void setDriverFilterAnn(String driverFilterAnn) { - this.driverFilterAnn = driverFilterAnn; - } - - public String getDriverTiersFilter() { - return driverTiersFilter; - } - - public void setDriverTiersFilter(String driverTiersFilter) { - this.driverTiersFilter = driverTiersFilter; - } - - public String getDriverTiersFilterAnn() { - return driverTiersFilterAnn; - } - - public void setDriverTiersFilterAnn(String driverTiersFilterAnn) { - this.driverTiersFilterAnn = driverTiersFilterAnn; - } - - public String getAnnotationJson() { - return annotationJson; - } - - public void setAnnotationJson(String annotationJson) { - this.annotationJson = annotationJson; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/TypeOfCancer.java b/core/src/main/java/org/mskcc/cbio/portal/model/TypeOfCancer.java deleted file mode 100644 index 1b7d609695b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/TypeOfCancer.java +++ /dev/null @@ -1,99 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.io.Serializable; -import com.fasterxml.jackson.annotation.JsonIgnore; -import com.fasterxml.jackson.annotation.JsonProperty; - -/** - * A TypeOfCancer is a clinical cancer type, such as Glioblastoma, Ovarian, etc. - * Eventually, we'll have ontology problems with this, but initially the dbms - * will be loaded from a file with a static table of types. - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * @author Arman Aksoy - */ -public class TypeOfCancer implements Serializable { - - private String name; - @JsonProperty("cancerTypeId") - private String typeOfCancerId; - // to preserve json output in DumpPortalInfo.java after migrating from ApiService - @JsonProperty("dedicatedColor") - private String dedicatedColor = "white"; - @JsonIgnore - private String shortName = ""; - @JsonIgnore - private String parentTypeOfCancerId; - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getTypeOfCancerId() { - return typeOfCancerId; - } - - public void setTypeOfCancerId(String typeOfCancerId) { - this.typeOfCancerId = typeOfCancerId; - } - - public String getDedicatedColor() { - return dedicatedColor; - } - - public void setDedicatedColor(String dedicatedColor) { - this.dedicatedColor = dedicatedColor; - } - - public String getShortName() { - return shortName; - } - - public void setShortName(String shortName) { - this.shortName = shortName; - } - - public String getParentTypeOfCancerId() { - return parentTypeOfCancerId; - } - - public void setParentTypeOfCancerId(String typeOfCancerId) { - this.parentTypeOfCancerId = typeOfCancerId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/User.java b/core/src/main/java/org/mskcc/cbio/portal/model/User.java deleted file mode 100644 index acc6145af6c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/User.java +++ /dev/null @@ -1,106 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import org.mskcc.cbio.portal.util.EqualsUtil; - -/** - * This represents a user, identified by an email address. - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * @author Benjamin Gross - */ -public class User { - private String email; - private String name; - private boolean enabled; - - public User(String email, String name, boolean enabled) { - if (null == email) { - throw new IllegalArgumentException ("email is null."); - } - this.email = email; - if (null == name) { - throw new IllegalArgumentException ("name is null."); - } - this.name = name; - this.enabled = enabled; - } - - public String getEmail() { - return email; - } - - public void setEmail(String email) { - this.email = email.toLowerCase(); - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public boolean isEnabled() { - return enabled; - } - - public void setEnabled(boolean enabled) { - this.enabled = enabled; - } - - @Override - public boolean equals(Object otherUser) { - if (this == otherUser) { - return true; - } - - if (!(otherUser instanceof User)) { - return false; - } - - User that = (User) otherUser; - return EqualsUtil.areEqual(this.email, that.email) - && EqualsUtil.areEqual(this.name, that.name); - } - - @Override - public int hashCode() { - int hash = 7; - hash = 67 * hash + (this.email != null ? this.email.hashCode() : 0); - hash = 67 * hash + (this.name != null ? this.name.hashCode() : 0); - return hash; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/UserAuthorities.java b/core/src/main/java/org/mskcc/cbio/portal/model/UserAuthorities.java deleted file mode 100644 index 9a47355823b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/UserAuthorities.java +++ /dev/null @@ -1,61 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -// imports -import java.util.Collection; - -/** - * User authorites bean. - * - * @author Benjamin Gross - */ -public class UserAuthorities { - - private String email; - private Collection authorities; - - /** - * Constructor. - */ - public UserAuthorities(String email, Collection authorities) { - this.email = email; - this.authorities = authorities; - } - - // accessors - public String getEmail() { return email; } - public void setEmail(String email) { this.email = email.toLowerCase(); } - public Collection getAuthorities() { return authorities; } - public void setAuthorities(Collection authorities) { this.authorities = authorities; } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudy.java b/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudy.java deleted file mode 100644 index c516082280b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudy.java +++ /dev/null @@ -1,44 +0,0 @@ -package org.mskcc.cbio.portal.model.virtualstudy; - -public class VirtualStudy { - - private String id; - private String source; - private String type; - private VirtualStudyData data; - - public String getId() { - return id; - } - - public void setId(String id) { - this.id = id; - } - - public VirtualStudyData getData() { - return data; - } - - public void setData(VirtualStudyData data) { - this.data = data; - } - - public String getSource() { - return source; - } - - public void setSource(String source) { - this.source = source; - } - - public String getType() { - return type; - } - - public void setType(String type) { - this.type = type; - } - -} - - diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudyData.java b/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudyData.java deleted file mode 100644 index 9787b55c6b5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudyData.java +++ /dev/null @@ -1,102 +0,0 @@ -package org.mskcc.cbio.portal.model.virtualstudy; - -import java.util.Collections; -import java.util.HashSet; -import java.util.Set; -import java.util.stream.Collectors; - -public class VirtualStudyData { - - private String name; - - private String description; - - private Set studies; - - private VirtualStudyFilters filters; - - private String owner = "anonymous"; - - private Set origin = new HashSet<>(); - - private Long created = System.currentTimeMillis(); - - private Set users = new HashSet<>(); - - private Float version = 1.0f; - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public Set getStudies() { - return studies; - } - - public void setStudies(Set studies) { - this.studies = studies; - } - - public VirtualStudyFilters getFilters() { - return filters; - } - - public void setFilters(VirtualStudyFilters filters) { - this.filters = filters; - } - - public String getOwner() { - return owner; - } - - public void setOwner(String owner) { - this.owner = owner; - } - - public Set getOrigin() { - if(origin == null || origin.size() == 0) { - return studies.stream().map(map -> map.getId()).collect(Collectors.toSet()); - } - return origin; - } - - public void setOrigin(Set origin) { - this.origin = origin; - } - - public Long getCreated() { - return created; - } - - public void setCreated(Long created) { - this.created = created; - } - - public Set getUsers() { - return users; - } - - public void setUsers(Set users) { - this.users = users; - } - - public Float getVersion() { - return version; - } - - public void setVersion(Float version) { - this.version = version; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudyFilters.java b/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudyFilters.java deleted file mode 100644 index 326e0f7f5cb..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudyFilters.java +++ /dev/null @@ -1,26 +0,0 @@ -package org.mskcc.cbio.portal.model.virtualstudy; - -import java.util.Map; -import java.util.Set; - -public class VirtualStudyFilters { - private Map> patients; - - private Map> samples; - - public Map> getPatients() { - return patients; - } - - public void setPatients(Map> patients) { - this.patients = patients; - } - - public Map> getSamples() { - return samples; - } - - public void setSamples(Map> samples) { - this.samples = samples; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudySamples.java b/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudySamples.java deleted file mode 100644 index 5953a79b246..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/model/virtualstudy/VirtualStudySamples.java +++ /dev/null @@ -1,25 +0,0 @@ -package org.mskcc.cbio.portal.model.virtualstudy; - -import java.util.Set; - -public class VirtualStudySamples { - private String id; - private Set samples; - - public String getId() { - return id; - } - - public void setId(String id) { - this.id = id; - } - - public Set getSamples() { - return samples; - } - - public void setSamples(Set samples) { - this.samples = samples; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/FeatureService.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/FeatureService.java deleted file mode 100644 index 124cd452890..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/FeatureService.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import java.util.List; - -/** - * Feature service. - */ -public interface FeatureService { - - /** - * Return an immutable list of zero or more sequences for the specified UniProt id, populated - * with sequence features such as regions, motifs, and markups. - * - * @param uniProtId UniProt id, must not be null - * @return an immutable list of zero or more sequences for the specified UniProt id - */ - List getFeatures(String uniProtId); -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Markup.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Markup.java deleted file mode 100644 index 26a34a2a163..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Markup.java +++ /dev/null @@ -1,141 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import java.util.List; -import java.util.Map; - -/** - * Markup, derived from Pfam graphics response in JSON format. - */ -public final class Markup { - private int start; - private int end; - private String href; - private List colour; - private String lineColour; - private String display; - private String residue; - private String type; - private String headStyle; - private String v_align; - private Map metadata; - - public void setStart(final int start) { - this.start = start; - } - - public int getStart() { - return start; - } - - public void setEnd(final int end) { - this.end = end; - } - - public int getEnd() { - return end; - } - - public void setHref(final String href) { - this.href = href; - } - - public String getHref() { - return href; - } - - public void setColour(final List colour) { - this.colour = colour; - } - - public List getColour() { - return colour; - } - - public void setLineColour(final String lineColour) { - this.lineColour = lineColour; - } - - public String getLineColour() { - return lineColour; - } - - public void setDisplay(final String display) { - this.display = display; - } - - public String getDisplay() { - return display; - } - - public void setResidue(final String residue) { - this.residue = residue; - } - - public String getResidue() { - return residue; - } - - public void setType(final String type) { - this.type = type; - } - - public String getType() { - return type; - } - - public void setHeadStyle(final String headStyle) { - this.headStyle = headStyle; - } - - public String getHeadStyle() { - return headStyle; - } - - public void setV_align(final String v_align) { - this.v_align = v_align; - } - - public String getV_align() { - return v_align; - } - - public void setMetadata(final Map metadata) { - this.metadata = metadata; - } - - public Map getMetadata() { - return metadata; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Motif.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Motif.java deleted file mode 100644 index 7382e00c306..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Motif.java +++ /dev/null @@ -1,104 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import java.util.List; -import java.util.Map; - -/** - * Motif, derived from Pfam graphics response in JSON format. - */ -public final class Motif { - private int start; - private int end; - private String href; - private List colour; - private String display; - private String type; - private Map metadata; - - public void setStart(final int start) { - this.start = start; - } - - public int getStart() { - return start; - } - - public void setEnd(final int end) { - this.end = end; - } - - public int getEnd() { - return end; - } - - public void setHref(final String href) { - this.href = href; - } - public String getHref() { - return href; - } - - public void setColour(final List colour) { - this.colour = colour; - } - - public List getColour() { - return colour; - } - - public void setDisplay(final String display) { - this.display = display; - } - - public String getDisplay() { - return display; - } - - public void setType(final String type) { - this.type = type; - } - - public String getType() { - return type; - } - - public void setMetadata(final Map metadata) { - this.metadata = metadata; - } - - public Map getMetadata() { - return metadata; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Options.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Options.java deleted file mode 100644 index 7658c2fe38e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Options.java +++ /dev/null @@ -1,48 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -/** - * Options, derived from Pfam graphics response in JSON format. - */ -public final class Options { - private String baseUrl; - - public void setBaseUrl(final String baseUrl) { - this.baseUrl = baseUrl; - } - - public String getBaseUrl() { - return baseUrl; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Pileup.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Pileup.java deleted file mode 100644 index 68a633eebfc..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Pileup.java +++ /dev/null @@ -1,167 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import static com.google.common.base.Preconditions.checkNotNull; - -import java.util.ArrayList; -import java.util.Collection; -import java.util.Collections; -import java.util.List; -import java.util.Map; -import java.util.Set; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.model.ExtendedMutation; - -import com.google.common.base.Joiner; -import com.google.common.collect.ArrayListMultimap; -import com.google.common.collect.HashMultimap; -import com.google.common.collect.ImmutableList; -import com.google.common.collect.ListMultimap; -import com.google.common.collect.Lists; -import com.google.common.collect.SetMultimap; -import com.google.common.collect.Sets; - -/** - * Pileup of one or mutations at a single location. - */ -public final class Pileup { - private static final Logger logger = LoggerFactory.getLogger(Pileup.class); - private final String label; - private final int location; - private final int count; - private final int missenseCount; - - public Pileup(final String label, - final int location, - final int count, - final int missenseCount) { - this.label = label; - this.location = location; - this.count = count; - this.missenseCount = missenseCount; - } - - /** - * Return the label for this pileup. - * - * @return the label for this pileup - */ - public String getLabel() { - return label; - } - - /** - * Return the location of this pileup. - * - * @return the location of this pileup - */ - public int getLocation() { - return location; - } - - /** - * Return the count of mutations at this location. - * - * @return the count of mutations as this location - */ - public int getCount() { - return count; - } - - /** - * Return the count of missense mutations at this location. - * - * @return the count of missense mutations as this location - */ - public int getMissenseCount() { - return missenseCount; - } - - /** - * Return a list of pileups for the specified list of mutations. The list of - * pileups may be empty but will not be null. - * - * @param mutations list of mutations, must not be null - * @return a list of pileups for the specified list of mutations - */ - public static List pileup(final List mutations) { - checkNotNull(mutations, "mutations must not be null"); - - List pileups = Lists.newArrayList(); - SetMultimap labels = HashMultimap.create(); - ListMultimap mutationsByLocation = ArrayListMultimap.create(); - for (ExtendedMutation mutation : mutations) { - String label = mutation.getProteinChange(); - if (label != null) { - try { - int location = Integer.valueOf(label.replaceAll("[A-Za-z\\.*]+", "")); - labels.put(location, label); - mutationsByLocation.put(location, mutation); - } - catch (NumberFormatException e) { - logger.warn("ignoring extended mutation " + label + ", no location information"); - } - } - } - - for (Map.Entry> entry : mutationsByLocation.asMap().entrySet()) - { - int location = entry.getKey(); - Set locationLabels = labels.get(location); - List sortedLocationLabels = new ArrayList(); - sortedLocationLabels.addAll(locationLabels); - Collections.sort(sortedLocationLabels); - String label = Joiner.on("/").join(sortedLocationLabels); - int missenseCount = 0; - Set caseIds = Sets.newHashSet(); - - for (ExtendedMutation mutation : entry.getValue()) - { - caseIds.add(mutation.getSampleId() + ":" + mutation.getProteinChange()); - - if (mutation.getMutationType() != null && - mutation.getMutationType().toLowerCase().contains("missense")) - { - missenseCount++; - } - } - - pileups.add(new Pileup(label, location, caseIds.size(), missenseCount)); - } - - return ImmutableList.copyOf(pileups); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Region.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Region.java deleted file mode 100644 index cd81bf6492a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Region.java +++ /dev/null @@ -1,175 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import java.util.Map; - -/** - * Region, derived from Pfam graphics response in JSON format. - */ -public final class Region { - private int start; - private int end; - private int aliStart; - private int aliEnd; - private int modelStart; - private int modelEnd; - private int modelLength; - private String text; - private String href; - private String colour; - private String display; - private String startStyle; - private String endStyle; - private String type; - private Map metadata; - - public void setStart(final int start) { - this.start = start; - } - - public int getStart() { - return start; - } - - public void setEnd(final int end) { - this.end = end; - } - - public int getEnd() { - return end; - } - - public void setAliStart(final int aliStart) { - this.aliStart = aliStart; - } - - public int getAliStart() { - return aliStart; - } - - public void setAliEnd(final int aliEnd) { - this.aliEnd = aliEnd; - } - - public int getAliEnd() { - return aliEnd; - } - - public void setModelStart(final int modelStart) { - this.modelStart = modelStart; - } - - public int getModelStart() { - return modelStart; - } - - public void setModelEnd(final int modelEnd) { - this.modelEnd = modelEnd; - } - - public int getModelEnd() { - return modelEnd; - } - - public void setModelLength(final int modelLength) { - this.modelLength = modelLength; - } - - public int getModelLength() { - return modelLength; - } - - public void setText(final String text) { - this.text = text; - } - - public String getText() { - return text; - } - - public void setHref(final String href) { - this.href = href; - } - public String getHref() { - return href; - } - - public void setColour(final String colour) { - this.colour = colour; - } - - public String getColour() { - return colour; - } - - public void setDisplay(final String display) { - this.display = display; - } - - public String getDisplay() { - return display; - } - - public void setStartStyle(final String startStyle) { - this.startStyle = startStyle; - } - - public String getStartStyle() { - return startStyle; - } - - public void setEndStyle(final String endStyle) { - this.endStyle = endStyle; - } - - public String getEndStyle() { - return endStyle; - } - - public void setType(final String type) { - this.type = type; - } - - public String getType() { - return type; - } - - public void setMetadata(final Map metadata) { - this.metadata = metadata; - } - - public Map getMetadata() { - return metadata; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Sequence.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Sequence.java deleted file mode 100644 index df285303f39..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/Sequence.java +++ /dev/null @@ -1,141 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import static com.google.common.collect.Lists.newArrayList; -import static com.google.common.collect.Maps.newHashMap; - -import java.util.List; -import java.util.Map; - -/** - * Sequence, derived from Pfam graphics response in JSON format. - */ -public final class Sequence { - private int length; - private List markups; - private List motifs; - private List regions; - private Map metadata; - private Options options; - - public void setLength(final int length) { - this.length = length; - } - - public int getLength() { - return length; - } - - public void setMarkups(final List markups) { - this.markups = markups; - } - - public List getMarkups() { - return markups; - } - - public void setMotifs(final List motifs) { - this.motifs = motifs; - } - - public List getMotifs() { - return motifs; - } - - public void setRegions(final List regions) { - this.regions = regions; - } - - public List getRegions() { - return regions; - } - - public void setMetadata(final Map metadata) { - this.metadata = metadata; - } - - public Map getMetadata() { - return metadata; - } - - public void setOptions(final Options options) { - this.options = options; - } - - public Options getOptions() { - return options; - } - - public Sequence deepCopy() { - Sequence sequence = new Sequence(); - sequence.setLength(length); - if (markups != null) { - sequence.setMarkups(newArrayList(markups)); - } - if (metadata != null) { - sequence.setMetadata(newHashMap(metadata)); - } - if (motifs != null) { - sequence.setMotifs(newArrayList(motifs)); - } - if (options != null) { - Options copy = new Options(); - copy.setBaseUrl(options.getBaseUrl()); - sequence.setOptions(copy); - } - if (regions != null) { - sequence.setRegions(newArrayList(regions)); - } - return sequence; - } - - /** - * Return a deep copy of this sequence with the additional list of markups. - * - * @param markups list of markups to add - * @return a deep copy of this sequence with the additional list of markups - */ - public Sequence withMarkups(final List markups) { - Sequence sequence = deepCopy(); - if (markups != null && !markups.isEmpty()) { - if (sequence.getMarkups() == null) { - sequence.setMarkups(newArrayList(markups)); - } - else { - sequence.getMarkups().addAll(markups); - } - } - return sequence; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/impl/CacheFeatureService.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/impl/CacheFeatureService.java deleted file mode 100644 index 954401d3cc6..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/impl/CacheFeatureService.java +++ /dev/null @@ -1,79 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram.impl; - -import static com.google.common.base.Preconditions.checkNotNull; - -import java.util.Collections; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.mut_diagram.FeatureService; -import org.mskcc.cbio.portal.mut_diagram.Sequence; - -import com.google.common.cache.Cache; -import com.google.common.cache.CacheBuilder; -import com.google.common.cache.CacheLoader; - -/** - * Implementation of FeatureService based on CacheBuilder. - */ -public final class CacheFeatureService implements FeatureService { - private static final List EMPTY = Collections.emptyList(); - private static final Logger logger = LoggerFactory.getLogger(CacheFeatureService.class); - private final Cache> cache; - - /** - * Create a new cache feature service with a cache populated by the specified cache loader. - * - * @param cacheLoader cache loader, must not be null - */ - public CacheFeatureService(final CacheLoader> cacheLoader) { - checkNotNull(cacheLoader, "cacheLoader must not be null"); - cache = CacheBuilder.newBuilder().build(cacheLoader); - } - - /** {@inheritDoc} */ - public List getFeatures(final String uniProtId) { - checkNotNull(uniProtId, "uniProtId must not be null"); - List toReturn = cache.getIfPresent(uniProtId); - - if (toReturn == null) { - logger.error("could not load features from cache for " + uniProtId); - return EMPTY; - } else { - return toReturn; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/impl/PfamGraphicsCacheLoader.java b/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/impl/PfamGraphicsCacheLoader.java deleted file mode 100644 index eeabfe6f5c0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/mut_diagram/impl/PfamGraphicsCacheLoader.java +++ /dev/null @@ -1,77 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram.impl; - -import java.net.URL; -import java.util.LinkedList; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.mut_diagram.Sequence; - -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.type.CollectionType; -import com.fasterxml.jackson.databind.type.TypeFactory; -import com.google.common.cache.CacheLoader; -import com.google.common.collect.ImmutableList; - -/** - * Feature service cache loader that calls the Pfam graphics service. - */ -public final class PfamGraphicsCacheLoader extends CacheLoader> { - private static final Logger logger = LoggerFactory.getLogger(PfamGraphicsCacheLoader.class); - static final String URL_PREFIX = "http://pfam.sanger.ac.uk/protein/"; - static final String URL_SUFFIX = "/graphic"; - private final ObjectMapper objectMapper; - - public PfamGraphicsCacheLoader(final ObjectMapper objectMapper) { - this.objectMapper = objectMapper; - } - - @Override - public List load(final String uniProtId) throws Exception { - List sequences = new LinkedList(); - try { - TypeFactory typeFactory = objectMapper.getTypeFactory(); - CollectionType sequenceList = typeFactory.constructCollectionType(List.class, Sequence.class); - - URL url = new URL(URL_PREFIX + uniProtId + URL_SUFFIX); - sequences = objectMapper.readValue(url, sequenceList); - } - catch (Exception e) { - logger.error("could not load features for " + uniProtId, e); - } - return ImmutableList.copyOf(sequences); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/network/Attribute.java b/core/src/main/java/org/mskcc/cbio/portal/network/Attribute.java deleted file mode 100644 index 7af50474f21..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/network/Attribute.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.network; - -/** - * - * @author jj - */ -public class Attribute { - private String name; - private Object value; - - /** - * - * @param name attribute name - * @param value attribute value - */ - Attribute(String name, Object value) { - this.name = name; - this.value = value; - } - - /** - * - * @return attribute name - */ - public String getName() { - return name; - } - - /** - * - * @return attribute value - */ - public Object getValue() { - return value; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/network/Edge.java b/core/src/main/java/org/mskcc/cbio/portal/network/Edge.java deleted file mode 100644 index 7b4bcfc9ffe..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/network/Edge.java +++ /dev/null @@ -1,123 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.network; - -import java.util.LinkedHashMap; -import java.util.Map; - -/** - * Class for Edge. - * @author jj - */ -public class Edge { - private boolean directed; - private String interactionType; - private Map attrs; - private String sourceID; - private String targetID; - - /** - * - * @param interactionType - */ - public Edge(boolean directed, String interactionType) { - this.directed = directed; - this.interactionType = interactionType; - attrs = new LinkedHashMap(); - } - - public Edge(boolean directed, String interactionType, String sourceID, String targetID) { - this.directed = directed; - this.interactionType = interactionType; - this.sourceID = sourceID; - this.targetID = targetID; - attrs = new LinkedHashMap(); - } - - public String getInteractionType() { - return interactionType; - } - - public void setInteractionType(String interactionType) { - this.interactionType = interactionType; - } - - /** - * - * @return edge attributes - */ - public Map getAttributes() { - return attrs; - } - - /** - * - * @param attr attribute name - * @param value attribute value - */ - public void addAttribute(String attr, Object value) { - attrs.put(attr, value); - } - - public boolean isDirected() { - return directed; - } - - public void setDirected(boolean directed) { - this.directed = directed; - } - - public String getSourceID() { - return sourceID; - } - - public void setSourceID(String sourceID) { - this.sourceID = sourceID; - } - - public String getTargetID() { - return targetID; - } - - public void setTargetID(String targetID) { - this.targetID = targetID; - } - - public boolean hasSameSourceTargetAndType(Edge other) - { - - return other.getSourceID().equals(this.getSourceID()) && - other.getTargetID().equals(this.getTargetID()) && - other.getAttributes().get("INTERACTION_TYPE").equals(this.getAttributes().get("INTERACTION_TYPE")); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/network/Network.java b/core/src/main/java/org/mskcc/cbio/portal/network/Network.java deleted file mode 100644 index 8260765c377..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/network/Network.java +++ /dev/null @@ -1,211 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.network; - -import edu.uci.ics.jung.graph.Graph; -import edu.uci.ics.jung.graph.DirectedSparseMultigraph; - -import java.util.Collection; -import java.util.HashMap; -import java.util.Iterator; -import java.util.Map; - -/** - * - * @author jj - */ -public class Network { - private Graph graph; - private Map nodesByIds; - - public Network() { - graph = new DirectedSparseMultigraph(); - nodesByIds = new HashMap(); - } - - /** - * - * @return the number of nodes - */ - public int countNodes() { - return countNodes(false); - } - - public int countNodes(boolean excludeDrugs) { - if(excludeDrugs) { - int count = 0; - for (Node node : nodesByIds.values()) { - if(node.getType().equals(NodeType.DRUG)) - continue; - - count++; - } - return count; - } else { - return graph.getVertexCount(); - } - } - - /** - * - * @return the number of edges - */ - public int coundEdges() { - return graph.getEdgeCount(); - } - - /** - * - * @return all edges - */ - public Collection getEdges() { - return graph.getEdges(); - } - - /** - * Returns the collection of nodes in this network which are connected to edge. - * @param node - * @return the collection of nodes which are connected to edge, could be empty. - */ - public Collection getIncidentEdges(Node node) { - return graph.getIncidentEdges(node); - } - - /** - * - * @param node - * @param edge - * @return - */ - public Node getOpposite(Node node, Edge edge) { - return graph.getOpposite(node, edge); - } - - /** - * - * @return all nodes - */ - public Collection getNodes() { - return graph.getVertices(); - } - - /** - * - * @param id node id - * @return the node with a particular id or null if not exist - */ - public Node getNodeById(String id) { - return nodesByIds.get(id); - } - - /** - * add a node - * @param node a node - */ - public void addNode(Node node) { - if (nodesByIds.get(node.getId())!=null) { - return; - } - - nodesByIds.put(node.getId(),node); - graph.addVertex(node); - } - - /** - * remove a node - * @param node a node - * @return true if node exists and removed - */ - public boolean removeNode(Node node) { - boolean ret = graph.removeVertex(node); - if (ret) { - nodesByIds.remove(node.getId()); - } - return ret; - } - - /** - * add an edge - * @param edge an edge - */ - public void addEdge(Edge edge) { - Node node1 = nodesByIds.get(edge.getSourceID()); - Node node2 = nodesByIds.get(edge.getTargetID()); - - if (node1==null || node2==null) { - throw new java.lang.UnsupportedOperationException("Add nodes before adding an edge"); - } - - graph.addEdge(edge, node1, node2); - - } - - /** - * - * @param edge an edge - * @return true if exists and removed - */ - public boolean removeEdge(Edge edge) { - return graph.removeEdge(edge); - } - - /** - * - * @param edge - * @return an array of 2 nodes - */ - public Node[] getNodes(Edge edge) { - return new Node[] {graph.getSource(edge), graph.getDest(edge)}; - } - - /** - * - */ - public Collection getNeighbors(Node node) { - return graph.getNeighbors(node); - } - - /** - * - * @param node - * @return - */ - public int getDegree(Node node) { - return graph.degree(node); - } - - public Collection findEdgeSet(Node node1, Node node2) - { - return this.graph.findEdgeSet(node1, node2); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/network/NetworkIO.java b/core/src/main/java/org/mskcc/cbio/portal/network/NetworkIO.java deleted file mode 100644 index 5bd552d26bd..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/network/NetworkIO.java +++ /dev/null @@ -1,509 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.network; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.util.*; -import org.apache.commons.httpclient.HttpClient; -import org.apache.commons.httpclient.HttpException; -import org.apache.commons.httpclient.HttpStatus; -import org.apache.commons.httpclient.MultiThreadedHttpConnectionManager; -import org.apache.commons.httpclient.methods.GetMethod; -import org.apache.commons.text.StringEscapeUtils; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Drug; -import org.mskcc.cbio.portal.model.DrugInteraction; -import org.mskcc.cbio.portal.model.Interaction; -import org.mskcc.cbio.portal.scripts.drug.AbstractDrugInfoImporter; -import org.mskcc.cbio.portal.web_api.ConnectionManager; -import org.mskcc.cbio.portal.util.GlobalProperties; - -/** - * - * @author jj - */ -public final class NetworkIO { - - public static enum NetworkSize { - SMALL, - MEDIUM, - LARGE - } - - /** - * private constructor for utility class. - */ - private NetworkIO(){} - - /** - * Interface for get label from a node - */ - public static interface NodeLabelHandler { - /** - * - * @param node a node - * @return label for the node - */ - String getLabel(Node node); - } - - public static String getCPath2URL(Set genes) { - StringBuilder sbUrl = new StringBuilder(GlobalProperties.getPathwayCommonsUrl()); - sbUrl.append("/graph?format=EXTENDED_BINARY_SIF&kind=NEIGHBORHOOD"); - for (String gene : genes) { - sbUrl.append("&source="); - sbUrl.append(gene.toUpperCase()); - } - - return sbUrl.toString(); - } - - public static Network readNetworkFromCPath2(Set genes, boolean removeSelfEdge) - throws DaoException, IOException { - String cPath2Url = getCPath2URL(genes); - - MultiThreadedHttpConnectionManager connectionManager = - ConnectionManager.getConnectionManager(); - HttpClient client = new HttpClient(connectionManager); - - GetMethod method = new GetMethod(cPath2Url); - try { - int statusCode = client.executeMethod(method); - if (statusCode == HttpStatus.SC_OK) { - Network network = readNetworkFromCPath2(method.getResponseBodyAsStream(), true); - Set seedNodes = addMissingGenesAndReturnSeedNodes(network, genes); - classifyNodes(network, seedNodes); - return network; - } else { - // Otherwise, throw HTTP Exception Object - throw new HttpException(statusCode + ": " + HttpStatus.getStatusText(statusCode) - + " Base URL: " + cPath2Url); - } - - } finally { - // Must release connection back to Apache Commons Connection Pool - method.releaseConnection(); - } - } - - /** - * Read a network from extended SIF of cPath2 - * @param isSif input stream of SIF - * @return a network - * @throws IOException if connection failed - */ - public static Network readNetworkFromCPath2(InputStream isSif, boolean removeSelfEdge) throws IOException { - Network network = new Network(); - BufferedReader bufReader = new BufferedReader(new InputStreamReader(isSif)); - - // read edges - String line = bufReader.readLine(); - if (!line.startsWith("PARTICIPANT_A\tINTERACTION_TYPE\tPARTICIPANT_B")) {// if empty - return network; - } - - String[] edgeHeaders = line.split("\t"); - ArrayList edgeLines = new ArrayList(); - for (line = bufReader.readLine(); !line.isEmpty(); line = bufReader.readLine()) { - edgeLines.add(line); - } - - // read nodes - line = bufReader.readLine(); - if (!line.startsWith("PARTICIPANT\tPARTICIPANT_TYPE\tPARTICIPANT_NAME\t" - + "UNIFICATION_XREF\tRELATIONSHIP_XREF")) { - System.err.print("cPath2 format changed."); - //return network; - } - - String[] nodeHeaders = line.split("\t"); - for (line = bufReader.readLine(); line!=null && !line.isEmpty(); line = bufReader.readLine()) { - String[] strs = line.split("\t"); - Node node = new Node(strs[0]); - for (int i=1; i addMissingGenesAndReturnSeedNodes(Network net, Set seedGenes) - throws DaoException { - Set seedNodes = new HashSet(seedGenes.size()); - Set missingGenes = new HashSet(seedGenes); - for (Node node : net.getNodes()) { - String symbol = NetworkUtils.getSymbol(node); - if (missingGenes.remove(symbol)) { - seedNodes.add(node); - } - } - - Map entrezHugoMap = getEntrezHugoMap(missingGenes); - for (Map.Entry entry : entrezHugoMap.entrySet()) { - Node node = addNode(net, entry.getKey().toString(), entry.getValue()); - seedNodes.add(node); - } - - return seedNodes; - } - - private static void classifyNodes(Network net, Set seedNodes) { - for (Node seed : seedNodes) { - seed.setAttribute("IN_QUERY", "true"); - //seed.setAttribute("IN_MEDIUM", "true"); - } - - for (Node node: net.getNodes()) { - if (seedNodes.contains(node)) { - continue; - } - - node.setAttribute("IN_QUERY", "false"); //TODO: remove this - } - } - - /** - * remove linker nodes that connect to only one query gene - * @param net - * @param seedNodes - */ - private static void pruneMediumNetwork(final Network net, final Set seedNodes) { - NetworkUtils.pruneNetwork(net, new NetworkUtils.NodeSelector() { - public boolean select(Node node) { - if (seedNodes.contains(node)) { - return false; - } - - int seedDegree = 0; - for (Node neighbor : net.getNeighbors(node)) { - if (seedNodes.contains(neighbor)) { - if (++seedDegree >= 2) { - return false; - } - } - } - return true; - } - }); - } - - private static Node addNode(Network net, String entrez, String hugo) { - Node node = net.getNodeById(entrez); - if (node != null) { - return node; - } - - node = new Node(entrez); - node.setType(NodeType.PROTEIN); - node.setAttribute("RELATIONSHIP_XREF", "HGNC:"+hugo+";Entrez Gene:"+entrez); - net.addNode(node); - return node; - } - - private static Node addDrugNode(Network net, Drug drug) throws DaoException { - Node node = net.getNodeById(drug.getId()); - if (node != null) { - return node; - } - - node = new Node(drug.getId()); - node.setType(NodeType.DRUG); - node.setAttribute("NAME", drug.getName()); - node.setAttribute("RELATIONSHIP_XREF", drug.getExternalReference()); - node.setAttribute("ATC_CODE", drug.getATCCode()); - node.setAttribute("FDA_APPROVAL", drug.isApprovedFDA() + ""); - node.setAttribute("CANCER_DRUG", drug.isCancerDrug() + ""); - node.setAttribute("NUMBER_OF_CLINICAL_TRIALS", drug.getNumberOfClinicalTrials()); - node.setAttribute("DESCRIPTION", drug.getDescription()); - node.setAttribute("SYNONYMS", drug.getSynonyms()); - - net.addNode(node); - return node; - } - - private static Map getEntrezHugoMap(Set genes) throws DaoException { - Map map = new HashMap(genes.size()); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - for (String gene : genes) { - CanonicalGene cGene = daoGeneOptimized.getGene(gene); - if (cGene!=null) { - map.put(cGene.getEntrezGeneId(),gene.toUpperCase()); - } - } - return map; - } - - private static String entrezToHugo(Map mapEntrezHugo, long entrez, - DaoGeneOptimized daoGeneOptimized) throws DaoException { - String hugo = mapEntrezHugo.get(entrez); - if (hugo==null) { - hugo = daoGeneOptimized.getGene(entrez).getHugoGeneSymbolAllCaps(); - mapEntrezHugo.put(entrez, hugo); - } - return hugo; - } - - /** - * Write network to SIF format - * @param network network to write - * @param nlh - * @return a string in SIF format - */ - public static String writeNetwork2Sif(Network network, NodeLabelHandler nlh) { - StringBuilder sb = new StringBuilder(); - - for (Edge edge : network.getEdges()) { - Node[] nodes = network.getNodes(edge); - sb.append(nlh.getLabel(nodes[0])); - sb.append("\t"); - sb.append(edge.getInteractionType()); - sb.append("\t"); - sb.append(nlh.getLabel(nodes[1])); - sb.append("\n"); - } - - return sb.toString(); - } - - /** - * Write network to GraphML format - * @param network network to write - * @param nlh - * @return a tring in GraphML format - */ - public static String writeNetwork2GraphML(Network network, NodeLabelHandler nlh) { - Map mapNodeAttrNameType = new HashMap(); - Map mapEdgeAttrNameType = new HashMap(); - - StringBuilder sbNodeEdge = new StringBuilder(); - - for (Node node : network.getNodes()) { - sbNodeEdge.append(" \n"); - sbNodeEdge.append(" "); - sbNodeEdge.append(nlh.getLabel(node)); - sbNodeEdge.append("\n"); - - sbNodeEdge.append(" "); - sbNodeEdge.append(node.getType().toString()); - sbNodeEdge.append("\n"); - - exportAttributes(node.getAttributes(),sbNodeEdge,mapNodeAttrNameType); - sbNodeEdge.append(" \n"); - } - - for (Edge edge : network.getEdges()) { - Node[] nodes = network.getNodes(edge); - sbNodeEdge.append(" \n"); - - sbNodeEdge.append(" "); - sbNodeEdge.append(edge.getInteractionType()); - sbNodeEdge.append("\n"); - - exportAttributes(edge.getAttributes(),sbNodeEdge,mapEdgeAttrNameType); - sbNodeEdge.append(" \n"); - } - - StringBuilder sb = new StringBuilder(); - sb.append("\n"); - sb.append(" \n"); - sb.append(" \n"); - - for (Map.Entry entry : mapNodeAttrNameType.entrySet()) { - sb.append(" \n"); - } - - for (Map.Entry entry : mapEdgeAttrNameType.entrySet()) { - sb.append(" \n"); - } - - sb.append(" \n"); - sb.append(sbNodeEdge); - sb.append(" \n"); - - sb.append("\n"); - - return sb.toString(); - } - - private static void exportAttributes(Map attrs, - StringBuilder to, Map mapAttrNameType) { - for (Map.Entry entry : attrs.entrySet()) { - String attr = entry.getKey(); - Object value = entry.getValue(); - - to.append(" "); - to.append(StringEscapeUtils.escapeXml11(value.toString())); - to.append("\n"); - - String type = getAttrType(value); - - String pre = mapAttrNameType.get(attr); - if (pre!=null) { - if (!pre.equals(type)) { - mapAttrNameType.put(attr, "string"); - } - } else { - mapAttrNameType.put(attr, type); - } - } - } - - private static String getAttrType(Object obj) { - if (obj instanceof Integer) { - return "integer"; - } - - if (obj instanceof Float || obj instanceof Double) { - return "double"; - } - - if (obj instanceof Boolean) { - return "boolean"; - } - - return "string"; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/network/NetworkUtils.java b/core/src/main/java/org/mskcc/cbio/portal/network/NetworkUtils.java deleted file mode 100644 index 5f13ed32f89..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/network/NetworkUtils.java +++ /dev/null @@ -1,196 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.network; - -import java.util.Arrays; -import java.util.HashMap; -import java.util.HashSet; -import java.util.Iterator; -import java.util.LinkedHashSet; -import java.util.Map; -import java.util.Set; -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -import org.apache.commons.lang3.StringUtils; - -/** - * - * @author jgao - */ -public final class NetworkUtils { - private NetworkUtils() {} - - public static String getSymbol(Node node) { - String strXrefs = (String)node.getAttribute("RELATIONSHIP_XREF"); - if (strXrefs==null) { - return null; - } - - Pattern pattern = Pattern.compile("HGNC Symbol:([^;]+)|HGNC SYMBOL:([^;]+)|HGNC:([^;]+)"); - Matcher matcher = pattern.matcher(strXrefs); - if (matcher.find()) - { - if (matcher.group(1) != null) { - return matcher.group(1).toUpperCase(); - } - else if (matcher.group(2) != null) { - return matcher.group(2).toUpperCase(); - } - else { - return matcher.group(3).toUpperCase(); - } - - } else { - return null; - } - } - - /** - * - */ - public static interface NodeSelector { - /** - * - * @return - */ - boolean select(Node node); - } - - /** - * - * @param net - * @param nodeSelector - */ - public static void pruneNetwork(Network net, NodeSelector nodeSelector) { - Set deleteNodes = new HashSet(); - for (Node node : net.getNodes()) { - if (nodeSelector.select(node)) { - deleteNodes.add(node); - } - } - - for (Node node : deleteNodes) { - net.removeNode(node); - } - } - - /** - * - * @param net - */ - public static void mergeNodesWithSameSymbol(Network net) { - Map mapSymbolNode = new HashMap(); - Set deleteNodes = new HashSet(); - for (Node node : net.getNodes()) { - String symbol = getSymbol(node); - if (symbol!=null) { - Node mergeTo = mapSymbolNode.get(symbol); - if (mergeTo==null) { - mapSymbolNode.put(symbol, node); - } else { - mergeNodes(net, mergeTo, node); - deleteNodes.add(node); - } - } - } - - for (Node node : deleteNodes) { - net.removeNode(node); - } - } - - /** - * - * @param net - * @param mergeTo - * @param mergeFrom - */ - private static void mergeNodes(Network net, Node mergeTo, Node mergeFrom) { - // merge attributes - mergeStringAttributes(mergeTo, mergeFrom, "PARTICIPANT_NAME"); - mergeStringAttributes(mergeTo, mergeFrom, "UNIFICATION_XREF"); - mergeStringAttributes(mergeTo, mergeFrom, "RELATIONSHIP_XREF"); - - // merge edges - for (Edge edge : net.getIncidentEdges(mergeFrom)) { - Node[] ends = net.getNodes(edge); - if (ends[0].equals(mergeFrom)) { - ends[0] = mergeTo; - } else { - ends[1] = mergeTo; - } - - net.removeEdge(edge); - //TODO check if this edge already occurs between this nodes - edge.setSourceID(ends[0].getId()); - edge.setTargetID(ends[1].getId()); - - if (net.findEdgeSet(mergeTo, mergeFrom).size() > 0) - { - for (Iterator iterator = net.findEdgeSet(mergeTo, mergeFrom).iterator(); iterator.hasNext();) - { - Edge tempEdge = (Edge) iterator.next(); - - if(!tempEdge.hasSameSourceTargetAndType(edge)) - net.addEdge(edge); - } - } - - } - } - - /** - * - * @param mergeTo - * @param mergeFrom - * @param attr - */ - private static void mergeStringAttributes(Node mergeTo, Node mergeFrom, String attr) { - Set attrs = new LinkedHashSet(); - - String attr2 = (String)mergeFrom.getAttribute(attr); - if (attr2==null) { - return; - } - - String attr1 = (String)mergeTo.getAttribute(attr); - if (attr1!=null) { - attrs.addAll(Arrays.asList(attr1.split(";"))); - } - - if (attrs.addAll(Arrays.asList(attr2.split(";")))) { - mergeTo.setAttribute(attr, StringUtils.join(attrs,";")); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/network/Node.java b/core/src/main/java/org/mskcc/cbio/portal/network/Node.java deleted file mode 100644 index f5aacc2bbd6..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/network/Node.java +++ /dev/null @@ -1,111 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.network; - -import java.util.Collections; -import java.util.LinkedHashMap; -import java.util.Map; - -/** - * Class for Node - * @author jj - */ -public class Node { - private String id; - private NodeType type = NodeType.UNKNOWN; - private Map attrs; // map of attr type to attr value - - /** - * - * @param id cannot be null - */ - Node(String id) { - if (id==null) { - throw new IllegalArgumentException("Node ID cannot be null"); - } - this.id = id; - attrs = new LinkedHashMap(); - } - - /** - * - * @return node ID - */ - public String getId() { - return id; - } - - public NodeType getType() { - return type; - } - - public void setType(NodeType type) { - this.type = type; - } - - /** - * - * @return node attributes - */ - public Map getAttributes() { - return Collections.unmodifiableMap(attrs); - } - - public Object getAttribute(String attrName) { - return attrs.get(attrName); - } - - /** - * - * @param attr attribute name - * @param value attribute value - */ - public void setAttribute(String attr, Object value) { - attrs.put(attr, value); - } - - @Override - public String toString() { - return id; - } - - @Override - public int hashCode() { - return id.hashCode(); - } - - @Override - public boolean equals(Object obj) { - return obj instanceof Node && id.equals(((Node) obj).id); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/network/NodeType.java b/core/src/main/java/org/mskcc/cbio/portal/network/NodeType.java deleted file mode 100644 index 78aaf023c38..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/network/NodeType.java +++ /dev/null @@ -1,115 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.network; - -import java.util.Map; -import java.util.HashMap; - -/** - * - * @author jgao - */ -public enum NodeType { - PROTEIN("Protein","ProteinReference"), - RNAREF("Protein","RnaReference"), - RNAREGREF("Protein","RnaRegionReference"), - DNAREF("Protein","DnaReference"), - DNAREGREF("Protein","DnaRegionReference"), - NUCACIDREF("Protein","NuecleicAcidReference"), - NUCACIDREGREF("Protein","NuecleicAcidRegionReference"), - SMALL_MOLECULE("SmallMolecule", "SmallMoleculeReference"), - COMPLEX_GROUP("ComplexGroup","ComplexGroup"), - GENERIC_PROTEIN("GenericProtein","GenericProtein"), - GENERIC_COMPLEX("GenericComplex","GenericComplex"), - GENERIC_SMALL_MOLECULE("GenericSmallMolecule","GenericSmallMolecule"), - GENERIC("Generic","Generic"), - DRUG("Drug", "Drug"), - UNKNOWN("Unknown","Unknown"); - - private final String desc; - private final String cpath2Keyword; - - private NodeType(String desc, String cpath2Keyword) { - this.desc = desc; - this.cpath2Keyword = cpath2Keyword; - } - - private boolean isProtein(String [] cpath2Keywords) - { - for (int i = 0; i < cpath2Keywords.length; i++) - { - if (mapCpath2NodeType.get(cpath2Keywords[i]).desc.equals("Protein")) - { - return true; - } - } - return false; - } - - private static final Map mapCpath2NodeType; - static { - mapCpath2NodeType = new HashMap(); - for (NodeType type : NodeType.values()) { - mapCpath2NodeType.put(type.cpath2Keyword, type); - } - } - - public static NodeType getByCpath2Keyword(final String cpath2Keyword) { - String [] cpath2References = cpath2Keyword.split(";"); - NodeType nodeType = mapCpath2NodeType.get(cpath2References[0]); - - for (int i = 0; i < cpath2References.length; i++) - { - NodeType newType = mapCpath2NodeType.get(cpath2References[i]); - - //That means something is going terribly wrong here ! - //Two different result for cpath2Keyword e.g. protein and small molecule ! - if (!newType.desc.equals(nodeType.desc)) - { - return UNKNOWN; - } - else - nodeType = newType; - } - - if (nodeType != null) - return nodeType; - else - return UNKNOWN; - } - - @Override - public String toString() { - return desc; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/CallOncoPrintSpecParser.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/CallOncoPrintSpecParser.java deleted file mode 100644 index c204ef56a70..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/CallOncoPrintSpecParser.java +++ /dev/null @@ -1,114 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.io.ByteArrayInputStream; -import java.io.IOException; - -import org.antlr.runtime.ANTLRInputStream; -import org.antlr.runtime.CommonTokenStream; -import org.antlr.runtime.RecognitionException; -import org.antlr.runtime.tree.CommonTree; -import org.antlr.runtime.tree.CommonTreeNodeStream; - -public class CallOncoPrintSpecParser { - - /** - * call the parser's root - * @param language - * @return - */ - public static ParserOutput callOncoPrintSpecParser( String specLanguage, OncoPrintGeneDisplaySpec anOncoPrintGeneDisplaySpec ){ - - try { - - specLanguage = reverseXSSclean( specLanguage ); - -// Utilities.clearErrorMessageList(); - // add end of line ;s where needed - ByteArrayInputStream bs = new ByteArrayInputStream( Utilities.appendSemis(specLanguage).getBytes() ); - ANTLRInputStream input = new ANTLRInputStream(bs); - - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getLineNumber()); - // Create a lexer attached to that input stream - completeOncoPrintSpecASTLexer lexer = new completeOncoPrintSpecASTLexer(input); - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - // Create a stream of tokens pulled from the lexer - CommonTokenStream tokens = new CommonTokenStream(lexer); - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - // Create a parser attached to the token stream - completeOncoPrintSpecASTParser parser = new completeOncoPrintSpecASTParser(tokens); - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - - // Invoke the program rule in get return value - completeOncoPrintSpecASTParser.oncoPrintSpecification_return r = parser.oncoPrintSpecification(); - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - - // now call returnedObject's getTree() - CommonTree t = (CommonTree)r.getTree(); - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - // Walk resulting tree; create treenode stream first - CommonTreeNodeStream nodes = new CommonTreeNodeStream( t ); - // AST nodes have payloads that point into token stream - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - nodes.setTokenStream(tokens); - // Create a tree Walker attached to the nodes stream - completeOncoPrintSpecASTwalker walker = new completeOncoPrintSpecASTwalker(nodes); - - // Invoke the start symbol - completeOncoPrintSpecASTwalker.oncoPrintSpecification_return rv - = (completeOncoPrintSpecASTwalker.oncoPrintSpecification_return) walker.oncoPrintSpecification( anOncoPrintGeneDisplaySpec ); - - ParserOutput theParserOutput = new ParserOutput( -// Utilities.getErrorMessages(), - // TODO: HIGH: UNIT TEST in OncoSpec - null, - rv.returnListOfErrors, - rv.theOncoPrintSpecification ); - return theParserOutput; - - } catch (IOException e) { - e.printStackTrace(); - } catch (RecognitionException e) { - e.printStackTrace(); - } - return null; - } - - // TODO: replace this with a comprehensive inverse of ServletXssUtil.getCleanInput(); cannot find any documentation on that now - public static String reverseXSSclean( String langInput ){ - // xssUtil cleaning screws up < and > signs; replace them - return langInput.replaceAll(">", ">").replaceAll("<", "<"); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ComparisonOp.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ComparisonOp.java deleted file mode 100644 index 471a360521d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ComparisonOp.java +++ /dev/null @@ -1,105 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.Arrays; - -import org.mskcc.cbio.portal.util.EqualsUtil; - -enum ComparisonOpDirection{ - Bigger, - Smaller, - Equal; -} - -public enum ComparisonOp { - GreaterEqual (">=", ComparisonOpDirection.Bigger), - Greater (">", ComparisonOpDirection.Bigger), - LessEqual ("<=", ComparisonOpDirection.Smaller), - Less ("<", ComparisonOpDirection.Smaller), - Equal ("=", ComparisonOpDirection.Equal); - - private final String token; - private final ComparisonOpDirection theComparisonOpDirection; - ComparisonOp( String token, ComparisonOpDirection theComparisonOpDirection){ - this.token = token; - this.theComparisonOpDirection = theComparisonOpDirection; - } - - public ComparisonOpDirection getTheComparisonOpDirection() { - return theComparisonOpDirection; - } - - /** - * map from an String ComparisonOp token to a ComparisonOp. - * @param parsedToken - * @return a ComparisonOp enum for the token - * @throws IllegalArgumentException when the token isn't a valid token for a ComparisonOp - */ - public static ComparisonOp convertCode( String parsedToken ) throws IllegalArgumentException{ - for( ComparisonOp v: ComparisonOp.values() ){ - if( v.token.equals(parsedToken) ){ - return v; - } - } - throw new IllegalArgumentException( "Invalid parsedToken: " + parsedToken ); - } - - public String getToken() { - return token; - } - - /** - * useful for testing. - * @param aComparisonOp - * @return - */ - public ComparisonOp oppositeComparisonOp( ){ - switch (this) { - case GreaterEqual: - return Less; - case Greater: - return LessEqual; - case LessEqual: - return Greater; - case Less: - return GreaterEqual; - case Equal: - return Equal; //todo: not correct - } - // keep compiler happy - (new UnreachableCodeException( "")).printStackTrace(); - return null; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/CompleteOncoPrintSpecASTdriver.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/CompleteOncoPrintSpecASTdriver.java deleted file mode 100644 index 22bed557718..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/CompleteOncoPrintSpecASTdriver.java +++ /dev/null @@ -1,220 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import static java.lang.System.out; - -import java.io.ByteArrayInputStream; -import java.io.IOException; -import java.lang.reflect.InvocationTargetException; -import java.lang.reflect.Method; -import java.util.Random; - -import org.antlr.runtime.ANTLRInputStream; -import org.antlr.runtime.CommonTokenStream; -import org.antlr.runtime.RecognitionException; -import org.antlr.runtime.tree.CommonTree; -import org.antlr.runtime.tree.CommonTreeNodeStream; - -public class CompleteOncoPrintSpecASTdriver { - - public static void main(String[] args) throws Exception { - - // TODO: MOVE TO TEST CODE - for( int j=0; j<20; j++){ - String s = randomInput( 100 ) ; - out.println( j + ": " + s ); - printObject( (OncoPrintSpecification)parseMethod( "oncoPrintSpecification", s, args ) ); - } - /* - printObject( (OncoPrintSpecification)parseMethod( "oncoPrintSpecification", - "DATATYPES : EXP MUT ; gene2 g3: CNA 2 ; g4 notGene \n", args ) ); - printObject( parseMethod( "oncoPrintSpecification", "", args ) ); - printObject( parseMethod( "oncoPrintSpecification", " \"hi mom\" { g3 g4} " + - " { g1 DATATYPES : EXP MUT ; g2 }" + - "DATATYPES : EXP MUT ; gene2 g3: CNA 2 ; g4 notGene \n" + - "", args ) ); - - printObject( parseMethod( "userGeneList", " \"hi mom\" { g3 g4}", args ) ); - printObject( parseMethod( "userGeneList", " { g1 DATATYPES : EXP MUT ; g2 } ", args ) ); - - printObject( parseMethod( "userGeneList", " g0 GENE1 : CNA > HetLoss ; " + - "DATATYPES : EXP MUT ; gene2 g3: CNA 2 ; g4 notGene \n" + - "f1: meth;", args ) ); - printObject( parseMethod( "geneList", " g0 GENE1 : CNA > HetLoss ; " + - "DATATYPES : EXP MUT ; gene2 g3: CNA 2 ; g4 notGene \n" + - "f1: meth;", args ) ); - - printObject( parseMethod( "fullDataTypeSpec", ": CNA > HetLoss Mut Exp < 3.5 ;", args ) ); - printObject( parseMethod( "fullDataTypeSpec", ": Exp <= -1 Exp < -1 Exp > 1 Exp > 2 ;", args ) ); - printObject( parseMethod( "fullDataTypeSpec", ": Exp foo;", args ) ); - printObject( parseMethod( "fullDataTypeSpec", ": Exp foo bar 876 *&^ ;", args ) ); - - printObject( parseMethod( "individualGene", "foo", args ) ); - printObject( parseMethod( "individualGene", "gene1: Methylation < 2;", args ) ); - printObject( parseMethod( "individualGene", "notGene", args ) ); - - printObject( parseMethod( "dataTypeSpec", "CNA > HetLoss", args ) ); - printObject( parseMethod( "dataTypeSpec", "\n\n CNA > elbow", args ) ); - printObject( parseMethod( "dataTypeSpec", "butt > HetLoss", args ) ); - printObject( parseMethod( "dataTypeSpec", "CNA 2", args ) ); - printObject( parseMethod( "dataTypeSpec", "CNA -1", args ) ); - - printObject( parseMethod( "dataTypeSpec", "CNA -4", args ) ); - printObject( parseMethod( "dataTypeSpec", "Mut -1", args ) ); - printObject( parseMethod( "dataTypeSpec", "Mut 0", args ) ); - printObject( parseMethod( "dataTypeSpec", "Mut 1", args ) ); - printObject( parseMethod( "dataTypeSpec", "Exp < 3.5", args ) ); - printObject( parseMethod( "dataTypeSpec", "Methylation < 2", args ) ); - printObject( parseMethod( "dataTypeSpec", "Methy < -1", args ) ); - printObject( parseMethod( "dataTypeSpec", "Ugly <= -1", args ) ); - */ - - printObject( parseMethod( "dataTypeSpec", "CNA", args ) ); - printObject( parseMethod( "dataTypeSpec", "GAI", args ) ); - printObject( parseMethod( "dataTypeSpec", "EXP", args ) ); - - printObject( parseMethod( "dataTypeSpec", "mrna", args ) ); - printObject( parseMethod( "dataTypeSpec", "FOO", args ) ); - printObject( parseMethod( "dataTypeSpec", "CNA < 3.5", args ) ); - printObject( parseMethod( "dataTypeSpec", "Exp << 3.5", args ) ); - printObject( parseMethod( "dataTypeSpec", "Exp < x", args ) ); - printObject( parseMethod( "dataTypeSpec", "foo < 3.5", args ) ); - printObject( parseMethod( "dataTypeSpec", "foo < 3.5", args ) ); - } - - static void printObject( Object o){ - if( null == o){ - // out.println( "null object" ); - }else{ - out.println( o.toString() ); - } - } - - /** - * return a string of n random tokens - * @param n - * @return - */ - static Random r = new Random(17); - private static String randomInput( int n ){ - StringBuffer sb=new StringBuffer(); - String tokens = "\\\" \t \r \n 0 1 2 3 4 5 6 .3 3. 0.2 . - + : ; : ; : ; : ; = == <= < > >= nonGene exp cna c mut methy expre mrna " + - "Gene1 gene2 DATATYPES \" DATATYPES \" { } { } { }"; - String[] tokenList = tokens.split( " +"); - // Random r = new Random(); - for( int i=0; i parserClass = parser.getClass(); // Class.forName("main.completeOncoPrintSpecASTParser.parser"); - //System.out.println( "parserClass is: " + parserClass.getName() ); - // create (empty) arg list - Class[] emptyArgList = new Class[] {}; - // get method - Method parserMethod = parserClass.getDeclaredMethod( method, emptyArgList); - //System.out.println( "parserMethod is: " + parserMethod.getName() ); - - // call method - // was completeOncoPrintSpecASTParser.fullDataTypeSpec_return r = parser.fullDataTypeSpec(); - Object parserRV = parserMethod.invoke( parser ); - - // now call returnedObject's getTree() - // get return value class - Class rvClass = parserRV.getClass(); - //System.out.println( "rvClass is: " + rvClass.getName() ); - // get method - Method rvClassGetTree = rvClass.getDeclaredMethod( "getTree", emptyArgList); - //System.out.println( "rvClassGetTree is: " + rvClassGetTree.getName() ); - // call method - // was: CommonTree t = (CommonTree)r.getTree(); - CommonTree theCommonTree = (CommonTree)rvClassGetTree.invoke(parserRV ); - //System.out.println( "theCommonTree is: " + "\n"+ theCommonTree.toStringTree() ); - - // Walk resulting tree; create treenode stream first - CommonTreeNodeStream nodes = new CommonTreeNodeStream(theCommonTree); - // AST nodes have payloads that point into token stream - nodes.setTokenStream(tokens); - // Create a tree Walker attached to the nodes stream - completeOncoPrintSpecASTwalker walker = new completeOncoPrintSpecASTwalker(nodes); - - // Invoke the start symbol, rule program - // invoke method 'method' on walker - return walker.getClass().getDeclaredMethod(method, emptyArgList).invoke(walker, (Object[])null); - // was: return walker.fullDataTypeSpec(); - - } catch (SecurityException e) { - - e.printStackTrace(); - } catch (IllegalArgumentException e) { - - e.printStackTrace(); - } catch (IOException e) { - e.printStackTrace(); - } catch (NoSuchMethodException e) { - - e.printStackTrace(); - } catch (IllegalAccessException e) { - - e.printStackTrace(); - } catch (InvocationTargetException e) { - - e.printStackTrace(); - } - - return null; - } - - static private CommonTokenStream getCommonTokenStream( String prog, String[] args )throws IOException{ - ByteArrayInputStream bs = new ByteArrayInputStream( prog.getBytes()); - ANTLRInputStream input = new ANTLRInputStream(bs); - // Create a lexer attached to that input stream - completeOncoPrintSpecASTLexer lexer = new completeOncoPrintSpecASTLexer(input); - // Create a stream of tokens pulled from the lexer - return new CommonTokenStream(lexer); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ConcreteDataTypeSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ConcreteDataTypeSpec.java deleted file mode 100644 index 38db1486148..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ConcreteDataTypeSpec.java +++ /dev/null @@ -1,86 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import org.mskcc.cbio.portal.util.EqualsUtil; -import org.mskcc.cbio.portal.util.HashCodeUtil; - -public class ConcreteDataTypeSpec extends DataTypeSpec { - - public ConcreteDataTypeSpec( GeneticDataTypes theGeneticDataType) { - this.theGeneticDataType = theGeneticDataType; - } - - public ConcreteDataTypeSpec( String name ) { - this.theGeneticDataType = findDataType( name ); - } - - public static ConcreteDataTypeSpec concreteDataTypeSpecGenerator( String name ){ - try { - return new ConcreteDataTypeSpec( DataTypeSpec.genericFindDataType( name ) ); - } catch (IllegalArgumentException e) { - return null; - } - } - - public static GeneticDataTypes findDataType( String name ) - throws IllegalArgumentException{ - return DataTypeSpec.genericFindDataType( name ); - } - - public boolean satisfy( GeneticDataTypes value) { - return this.theGeneticDataType.equals(value); - } - - @Override - public String toString() { - return theGeneticDataType.toString(); - } - - @Override - public boolean equals( Object otherConcreteDataTypeSpec) { - if( this == otherConcreteDataTypeSpec ) return true; - if ( !(otherConcreteDataTypeSpec instanceof ConcreteDataTypeSpec) ) return false; - ConcreteDataTypeSpec that = (ConcreteDataTypeSpec) otherConcreteDataTypeSpec; - return - EqualsUtil.areEqual(this.theGeneticDataType, that.theGeneticDataType); - } - - // TODO: TEST - @Override - public int hashCode( ) { - int result = HashCodeUtil.SEED; - result = HashCodeUtil.hash( result, theGeneticDataType ); - return result; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ContinuousDataTypeSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ContinuousDataTypeSpec.java deleted file mode 100644 index a9f36448c36..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ContinuousDataTypeSpec.java +++ /dev/null @@ -1,179 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; -import static java.lang.System.out; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; -import org.mskcc.cbio.portal.util.EqualsUtil; - -/** - * generically record and access the Continuous DataTypeSpecs, Expression and - * Methylation. - * - * @author Arthur Goldberg - */ -public class ContinuousDataTypeSpec extends DataTypeSpecInequality{ - - public ContinuousDataTypeSpec(GeneticDataTypes theGeneticDataType, - ComparisonOp comparisonOp, float threshold ) throws IllegalArgumentException{ - if( !theGeneticDataType.getTheDataTypeCategory().equals(DataTypeCategory.Continuous)){ - throw new IllegalArgumentException("ContinuousDataTypeSpec only takes Continuous GeneticDataTypes"); - } - this.theGeneticDataType = theGeneticDataType; - this.comparisonOp = comparisonOp; - this.threshold = Float.valueOf(threshold); - } - - /** - * generate a ContinuousDataTypeSpec from String only arguments; ease implementation of the grammar - * motto: do as little as possible in the grammar! - * - * @param theGeneticDataTypeString - * @param theComparisonOpString - * @param theThresholdString - * @return - */ - public static ContinuousDataTypeSpec continuousDataTypeSpecGenerator(String theGeneticDataTypeString, - String theComparisonOpString, String theThresholdString ){ - try { - //out.println( "continuousDataTypeSpecGenerator" + ":" + theGeneticDataTypeString + ":" + theComparisonOpString + ":" + theThresholdString ); - GeneticDataTypes theGeneticDataType = ContinuousDataTypeSpec.findDataType( theGeneticDataTypeString ); - ComparisonOp theComparisonOp = ComparisonOp.convertCode( theComparisonOpString ); - if( null == theThresholdString ){ - return null; - } - float theThreshold = Float.parseFloat( theThresholdString ); - return new ContinuousDataTypeSpec( theGeneticDataType, theComparisonOp, theThreshold ); - } catch (IllegalArgumentException e) { - return null; - } - } - - /** - * Copy constructor. - */ - public ContinuousDataTypeSpec(ContinuousDataTypeSpec aContinuousDataTypeSpec) { - this( aContinuousDataTypeSpec.getTheGeneticDataType(), aContinuousDataTypeSpec.getComparisonOp(), - ((Float)aContinuousDataTypeSpec.getThreshold()).floatValue() ); - //no defensive copies are created here, since - //there are no mutable object fields - } - - public static ContinuousDataTypeSpec newInstance( ContinuousDataTypeSpec aContinuousDataTypeSpec ){ - if( null == aContinuousDataTypeSpec ){ - return null; - } - return new ContinuousDataTypeSpec( aContinuousDataTypeSpec ); - } - - public static GeneticDataTypes findDataType( String name ) - throws IllegalArgumentException{ - return DataTypeSpecInequality.genericFindDataType( name, DataTypeCategory.Continuous ); - } - - /** - * indicate whether value satisfies this ContinuousDataTypeSpec - * - * @param value - * @return true if value satisfies this ContinuousDataTypeSpec - */ - public boolean satisfy( double value){ - Float f = (Float)this.threshold; - float t = f.floatValue(); - switch (this.comparisonOp) { - case GreaterEqual: - return( t <= value ); - case Greater: - return( t < value ); - case LessEqual: - return( value <= t ); - case Less: - return( value < t ); - } - // keep compiler happy - (new UnreachableCodeException( "")).printStackTrace(); - return false; - } - - /** - * combine aContinuousDataTypeSpec into this ContinuousDataTypeSpec, so that this ContinuousDataTypeSpec - * accepts any value that would have been accepted by either ContinuousDataTypeSpec. - * Both ContinuousDataTypeSpecs must have ComparisonOps with the same direction (> or <). - * Used to simplify a specification. - * - * @param aContinuousDataTypeSpec - * @throws IllegalArgumentException when the ContinuousDataTypeSpecs have ComparisonOps with different directions. - */ - public void combine(ContinuousDataTypeSpec aContinuousDataTypeSpec) throws IllegalArgumentException{ - if( !this.comparisonOp.getTheComparisonOpDirection().equals( aContinuousDataTypeSpec.getComparisonOp().getTheComparisonOpDirection() ) ){ - throw new IllegalArgumentException( "the ContinuousDataTypeSpecs must have ComparisonOps with the same direction" ); - } - switch( this.comparisonOp.getTheComparisonOpDirection() ){ - case Smaller: - if( ((Float)aContinuousDataTypeSpec.getThreshold()).floatValue() > ((Float)this.threshold).floatValue()){ - this.threshold = aContinuousDataTypeSpec.getThreshold(); - this.comparisonOp = aContinuousDataTypeSpec.getComparisonOp(); - } else if( ((Float)aContinuousDataTypeSpec.getThreshold()).floatValue() == ((Float)this.threshold).floatValue()){ - if(this.comparisonOp.equals(ComparisonOp.LessEqual) || aContinuousDataTypeSpec.getComparisonOp().equals(ComparisonOp.LessEqual) ){ - this.comparisonOp = ComparisonOp.LessEqual; - } - } - break; - - case Bigger: - if( ((Float)aContinuousDataTypeSpec.getThreshold()).floatValue() < ((Float)this.threshold).floatValue()){ - this.threshold = aContinuousDataTypeSpec.getThreshold(); - this.comparisonOp = aContinuousDataTypeSpec.getComparisonOp(); - } else if( ((Float)aContinuousDataTypeSpec.getThreshold()).floatValue() == ((Float)this.threshold).floatValue()){ - if(this.comparisonOp.equals(ComparisonOp.GreaterEqual) || aContinuousDataTypeSpec.getComparisonOp().equals(ComparisonOp.GreaterEqual) ){ - this.comparisonOp = ComparisonOp.GreaterEqual; - } - } - break; - - } - - } - - @Override - public boolean equals( Object aThat ) { - if ( this == aThat ) return true; - if ( !(aThat instanceof ContinuousDataTypeSpec) ) return false; - return - super.equals(aThat); - } - - @Override public final Object clone() throws CloneNotSupportedException { - throw new CloneNotSupportedException(); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpec.java deleted file mode 100644 index a29cd6451a7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpec.java +++ /dev/null @@ -1,85 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; - -/** - * DataTypeSpec is an abstract class at the root of a set of classes that - * record and provide access to data type specifications. - * - * @author Arthur Goldberg - */ -public abstract class DataTypeSpec { - GeneticDataTypes theGeneticDataType; - - public GeneticDataTypes getTheGeneticDataType() { - return theGeneticDataType; - } - - /** - * if a string name identifies a the unique genetic data type return the type, else - * throw IllegalArgumentException. - * @param name - * @param subType if non null, the unique genetic data type must have this DataTypeCategory - * @return - * @throws IllegalArgumentException - */ - public static GeneticDataTypes genericFindDataType( String name, DataTypeCategory subType ) - throws IllegalArgumentException{ - - GeneticDataTypes gdt = (GeneticDataTypes) UniqueEnumPrefix.findUniqueEnumMatchingPrefix( GeneticDataTypes.class, name ); - if( gdt == null ) { - gdt = (GeneticDataTypes)UniqueEnumPrefix.findUniqueEnumWithNicknameMatchingPrefix( GeneticDataTypes.class, name ); - } - if( gdt == null ) { - throw new IllegalArgumentException( "Invalid DataType: " + name ); - } - if( null == subType ){ - return gdt; - }else{ - if( gdt.getTheDataTypeCategory() == subType ){ - return gdt; - }else{ - throw new IllegalArgumentException( "Invalid DataType: " + name ); - } - } - } - - public static GeneticDataTypes genericFindDataType( String name ) - throws IllegalArgumentException{ - - return genericFindDataType( name, null ); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpecEnumerations.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpecEnumerations.java deleted file mode 100644 index d5ebf48b92c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpecEnumerations.java +++ /dev/null @@ -1,77 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import static java.lang.System.out; - -import java.util.ArrayList; - -public class DataTypeSpecEnumerations { - static public boolean isDataTypeName(String id) { - - if (null == UniqueEnumPrefix.findUniqueEnumMatchingPrefix( - GeneticDataTypes.class, id) - && null == UniqueEnumPrefix.findUniqueEnumWithNicknameMatchingPrefix( - GeneticDataTypes.class, id)) { - // out.format( "isDataTypeName: returning false for '%s'%n", id ); - return false; - } - // out.format( "isDataTypeName: returning true for '%s'%n", id ); - return true; - } - - static public boolean isDataTypeLevel(String id) { - if (null == UniqueEnumPrefix.findUniqueEnumMatchingPrefix( - GeneticTypeLevel.class, id) - && null == UniqueEnumPrefix - .findUniqueEnumWithNicknameMatchingPrefix( - GeneticTypeLevel.class, id)) { - //out.format( "isDataTypeLevel: returning false for '%s'%n", id ); - ArrayList levels = new ArrayList(); - for( GeneticTypeLevel aGeneticTypeLevel: GeneticTypeLevel.values()){ - levels.add(aGeneticTypeLevel.toString()); - for( String s : aGeneticTypeLevel.getNicknames()){ - levels.add( s ); - } - } - out.format( "'%s' is not a unique data level; valid levels are %s.%n", id, levels ); - return false; - } - // out.format( "isDataTypeLevel: returning true for '%s'%n", id ); - return true; - } - - public enum DataTypeCategory { - Continuous, Discrete - }; -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpecInequality.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpecInequality.java deleted file mode 100644 index dbf59ace840..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DataTypeSpecInequality.java +++ /dev/null @@ -1,88 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import org.mskcc.cbio.portal.util.EqualsUtil; -import org.mskcc.cbio.portal.util.HashCodeUtil; - -/** - * Generically record and access a DataTypeSpec inequality, that is a spec that says - * a value must be greater or less (or >= or <=) a threshold. - * Subclassed by concrete classes DiscreteDataTypeSpec and ContinuousDataTypeSpec. - * - * @author Arthur Goldberg - */ -public abstract class DataTypeSpecInequality extends DataTypeSpec{ - - /** - * record the range over which a value satisfies the specification. - * @author Arthur Goldberg - */ - ComparisonOp comparisonOp; - Object threshold; // A level within theGeneticDataType; - - public ComparisonOp getComparisonOp() { - return comparisonOp; - } - - public Object getThreshold() { - return threshold; - } - - @Override - public String toString() { - return theGeneticDataType.toString() + comparisonOp.getToken() + - threshold.toString(); - } - - @Override - public boolean equals( Object otherDataTypeSpec) { - if( this == otherDataTypeSpec ) return true; - if ( !(otherDataTypeSpec instanceof DataTypeSpecInequality) ) return false; - DataTypeSpecInequality that = (DataTypeSpecInequality) otherDataTypeSpec; - return - EqualsUtil.areEqual(this.theGeneticDataType, that.theGeneticDataType) && - EqualsUtil.areEqual(this.threshold, that.threshold) && - EqualsUtil.areEqual(this.comparisonOp, that.comparisonOp); - } - - // TODO: TEST - @Override - public int hashCode( ) { - int result = HashCodeUtil.SEED; - result = HashCodeUtil.hash( result, theGeneticDataType ); - result = HashCodeUtil.hash( result, threshold ); - result = HashCodeUtil.hash( result, comparisonOp ); - return result; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DiscreteDataTypeSetSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DiscreteDataTypeSetSpec.java deleted file mode 100644 index 28d9f7b07a3..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DiscreteDataTypeSetSpec.java +++ /dev/null @@ -1,383 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.EnumSet; -import java.util.HashSet; -import java.util.Set; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; -import org.mskcc.cbio.portal.util.EqualsUtil; -import org.mskcc.cbio.portal.util.HashCodeUtil; - -/** - * Represent a discrete dataTypeSpec, like CNA or mutation. - * The specified values are given by an EnumSet, so any subset can be specified. - * - * TODO: replace DiscreteDataTypeSpec with this - * @author Arthur Goldberg - */ -public class DiscreteDataTypeSetSpec extends DataTypeSpec{ - - private final Set specifiedValues; - private final Set mutationPatterns; - - public DiscreteDataTypeSetSpec(GeneticDataTypes theGeneticDataType){ - this.theGeneticDataType = theGeneticDataType; - specifiedValues = EnumSet.noneOf(GeneticTypeLevel.class); - mutationPatterns = new HashSet(); - } - - /** - * create a DiscreteDataTypeSetSpec from a datatype name and a data type level - * @param theGeneticDataType - * @param validValues1 - */ - public DiscreteDataTypeSetSpec(GeneticDataTypes theGeneticDataType, - GeneticTypeLevel validValues1) throws IllegalArgumentException{ - // verify that validValues1 is a level for theGeneticDataType - if( validValues1.getTheGeneticDataType().equals(theGeneticDataType)){ - this.theGeneticDataType = theGeneticDataType; - this.specifiedValues = EnumSet.of(validValues1); - mutationPatterns = new HashSet(); - }else{ - throw new IllegalArgumentException( validValues1 + " is not a level for " + theGeneticDataType ); - } - } - - /** - * create a DiscreteDataTypeSetSpec from a datatype name and a numerical level code. - * - * @param theGeneticDataTypeName - * @param levelCode - */ - public DiscreteDataTypeSetSpec(String theGeneticDataTypeName, - int levelCode) { - //System.out.format( "DiscreteDataTypeSetSpec: constructed with '%s' and '%d'%n", theGeneticDataTypeName, levelCode ); - - theGeneticDataType = DiscreteDataTypeSpec.findDataType( theGeneticDataTypeName ); - // convertCode throws an exception if levelCode is not a level for theGeneticDataTypeName - specifiedValues = EnumSet.of( GeneticTypeLevel.convertCode( this.theGeneticDataType, levelCode )); - mutationPatterns = new HashSet(); - } - - /** - * create a DiscreteDataTypeSetSpec from a datatype name and a set of levels. - * - * @param theGeneticDataType - * @param validValues - */ - public DiscreteDataTypeSetSpec(GeneticDataTypes theGeneticDataType, - GeneticTypeLevel... validValues) { - this.theGeneticDataType = theGeneticDataType; - this.specifiedValues = EnumSet.noneOf(GeneticTypeLevel.class); - // TODO: perhaps make it an error to provide no validValues - for( GeneticTypeLevel c : validValues){ - this.specifiedValues.add(c); - } - mutationPatterns = new HashSet(); - } - - /** - * - * @param theGeneticDataTypeNameString - * @param levelCodeString - * @return - */ - public static DiscreteDataTypeSetSpec discreteDataTypeSetSpecGeneratorByLevelCode(String theGeneticDataTypeNameString, - String levelCodeString ){ - - try { - return new DiscreteDataTypeSetSpec( theGeneticDataTypeNameString, Integer.parseInt(levelCodeString) ); - } catch (NumberFormatException e) { - return null; - } catch (IllegalArgumentException e) { - return null; - } - - } - - /** - * - * @param levelName - * @return - */ - public static DiscreteDataTypeSetSpec discreteDataTypeSetSpecGeneratorByLevelName(String levelName){ - if (levelName==null) { - return null; - } - - GeneticTypeLevel theGeneticTypeLevel = GeneticTypeLevel.findDataTypeLevel(levelName); - - // verify that levelName maps to a level within a discrete datatype - if( theGeneticTypeLevel!=null - && theGeneticTypeLevel.getTheGeneticDataType().getTheDataTypeCategory() - .equals(DataTypeCategory.Discrete) ){ - return new DiscreteDataTypeSetSpec(theGeneticTypeLevel.getTheGeneticDataType(), - theGeneticTypeLevel); - }else{ - return null; - } - } - - /** - * - * @param specificMutation - * @return - */ - public static DiscreteDataTypeSetSpec specificMutationDataTypeSetSpecGenerator(String specificMutation){ - DiscreteDataTypeSetSpec ret = new DiscreteDataTypeSetSpec(GeneticDataTypes.Mutation); - ret.addLevel(specificMutation); - return ret; - } - - public static GeneticDataTypes findDataType( String name ) - throws IllegalArgumentException{ - return DataTypeSpec.genericFindDataType( name, DataTypeCategory.Discrete ); - } - - /** - * Alternative style for a copy constructor, using a static newInstance - * method. - */ - public static DiscreteDataTypeSetSpec newInstance( DiscreteDataTypeSetSpec aDiscreteDataTypeSetSpec ) { - if( null == aDiscreteDataTypeSetSpec ){ - return null; - } - DiscreteDataTypeSetSpec theNewDiscreteDataTypeSetSpec = - new DiscreteDataTypeSetSpec( aDiscreteDataTypeSetSpec.getTheGeneticDataType() ); - theNewDiscreteDataTypeSetSpec.combine(aDiscreteDataTypeSetSpec); - return theNewDiscreteDataTypeSetSpec; - } - - /** - * indicate whether value satisfies this DiscreteDataTypeSetSpec - * @param value - * @return true if value satisfies this DiscreteDataTypeSetSpec - */ - public boolean satisfy( Object value ) { - if (value instanceof GeneticTypeLevel) { - return this.specifiedValues.contains((GeneticTypeLevel)value); - } else if (theGeneticDataType == GeneticDataTypes.Mutation) { - if (value instanceof String) { - return satisfySpecificMutation((String)value); - } - } - return false; - } - - private static Pattern SPECIFIC_POSITION_MUTATION_PATTERN = Pattern.compile("[^0-9]*([0-9]+)"); - private static Pattern SPECIFIC_RANGE_DELETION_PATTERN = Pattern.compile("[^0-9]*([0-9]+)[^0-9]+([0-9]+)[^0-9]*"); - private boolean satisfySpecificMutation( String specificMutations ) { - String specificMutationsUpper = specificMutations.toUpperCase(); - for (String specificMutationUpper : specificMutationsUpper.split(",")) { - if (specificMutationUpper.startsWith("P.")) { - specificMutationUpper = specificMutationUpper.substring(2); - } - - specificMutationUpper = specificMutationUpper.replaceAll(" ","_"); - - if (mutationPatterns.contains(specificMutationUpper)) { - // complete match, including specific mutation to an amino acid such V600E, D200fs - return true; - } - - for ( String mutationPattern : mutationPatterns ) { - Matcher spm = SPECIFIC_POSITION_MUTATION_PATTERN.matcher(mutationPattern); - if (spm.matches()) {// all mutations for a specific amino acid - String strPos = spm.group(1); - if (specificMutationUpper.matches(".*[^0-9]+"+strPos+"[^0-9\\+\\-]*") - || specificMutationUpper.matches(strPos+"[^0-9]+.*")) { - // To deal with cases that the query position appears in the mutation string - // e.g., S634*, S479_splice, *691S, 278in_frame_del, 1002_1003_del, - // YQQQQQ263in_frame_del*, A1060fs, A277_splice - // Note: "S30" will not match "S300" - // Note: "S30" will not match "e30+1" - return true; - } - - Matcher delm = SPECIFIC_RANGE_DELETION_PATTERN.matcher(specificMutationUpper); - if (delm.matches()) { - // To deal with deletions - // e.g. query 1020 matches 1018_1023DNPPVL>V - int start = Integer.parseInt(delm.group(1)); - int end = Integer.parseInt(delm.group(2)); - int pos = Integer.parseInt(strPos); - if (start getSpecifiedValues() { - return specifiedValues; - } - - public Set getMutationPatterns() { - return mutationPatterns; - } - - @Override public final Object clone() throws CloneNotSupportedException { - throw new CloneNotSupportedException(); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DiscreteDataTypeSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DiscreteDataTypeSpec.java deleted file mode 100644 index e7a8f4e8044..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/DiscreteDataTypeSpec.java +++ /dev/null @@ -1,162 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; -import static java.lang.System.out; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; - -/** - * Generically record and access an inequality of one of the Discrete DataTypeSpecs, CNA and Mutation. - * - * @author Arthur Goldberg - */ -// TODO: since I need DiscreteDataTypeSetSpec, could reimplement this class with that -public class DiscreteDataTypeSpec extends DataTypeSpecInequality{ - - // TODO: constructor that takes text and use it in grammar to simplify that code - public DiscreteDataTypeSpec( - GeneticDataTypes theGeneticDataType, - ComparisonOp comparisonOp, Object threshold) throws IllegalArgumentException{ - this.theGeneticDataType = theGeneticDataType; - this.comparisonOp = comparisonOp; - - this.threshold = threshold; - // verify that threshold is a level within theGeneticDataType - if( theGeneticDataType == GeneticDataTypes.CopyNumberAlteration - && !theGeneticDataType.equals( ((GeneticTypeLevel) threshold).getTheGeneticDataType() )) { - // assumes that levels are organized in increasing order - throw new IllegalArgumentException( "threshold is not a level within theGeneticDataType" ); - } - } - - /** - * generate a DiscreteDataTypeSpec from the strings found by discreteDataType in the completeOncoPrintSpecAST - * @param theGeneticDataTypeString - * @param comparisonOpString - * @param levelString - * @return the DiscreteDataTypeSpec, or null if any inputs were incorrect - */ - public static DiscreteDataTypeSpec discreteDataTypeSpecGenerator( String theGeneticDataTypeString, - String comparisonOpString, String levelString ){ - try { - GeneticDataTypes theGeneticDataType = DiscreteDataTypeSpec.findDataType( theGeneticDataTypeString ); - ComparisonOp theComparisonOp = ComparisonOp.convertCode( comparisonOpString ); - Object threshold; - if (theGeneticDataType == GeneticDataTypes.CopyNumberAlteration) { - threshold = GeneticTypeLevel.findDataTypeLevel(levelString); - } else { - threshold = levelString; - } - return new DiscreteDataTypeSpec( theGeneticDataType, theComparisonOp, threshold ); - } catch (IllegalArgumentException e) { - //out.println( e.getMessage() ); - return null; - } - } - - public static GeneticDataTypes findDataType( String name ) - throws IllegalArgumentException{ - return DataTypeSpecInequality.genericFindDataType( name, DataTypeCategory.Discrete ); - } - - /** - * indicate whether value satisfies this DataTypeSpec - * - * @param value - * @return true if value satisfies this DataTypeSpec - */ - public boolean satisfy( Object value) { - if (value instanceof GeneticTypeLevel) { - if (!(threshold instanceof GeneticTypeLevel)) { - return false; - } - GeneticTypeLevel gtl = (GeneticTypeLevel)value; - if( !gtl.getTheGeneticDataType().equals(theGeneticDataType) ){ - return false; - } - GeneticTypeLevel theCNAthreshold = (GeneticTypeLevel)this.threshold; - switch (this.comparisonOp) { - case GreaterEqual: - return( 0 <= gtl.compareTo(theCNAthreshold) ); - case Greater: - return( 0 < gtl.compareTo(theCNAthreshold) ); - case LessEqual: - return( gtl.compareTo(theCNAthreshold) <= 0 ); - case Less: - return( gtl.compareTo(theCNAthreshold) < 0 ); - case Equal: - return ( gtl.compareTo(theCNAthreshold) == 0 ); - } - } - else if (value instanceof String) { - if (!(threshold instanceof String)) { - return false; - } - return comparisonOp == ComparisonOp.Equal && value.equals(threshold.toString()); - } - // keep compiler happy - (new UnreachableCodeException( "")).printStackTrace(); - return false; - } - - /** - * convert this DiscreteDataTypeSpec into a DiscreteDataTypeSetSpec - * @return a DiscreteDataTypeSetSpec that satisfies the same levels as the DiscreteDataTypeSpec - */ - // TODO: test - public DiscreteDataTypeSetSpec convertToDiscreteDataTypeSetSpec( ){ - if (threshold instanceof GeneticTypeLevel) { - DiscreteDataTypeSetSpec aDiscreteDataTypeSetSpec = new DiscreteDataTypeSetSpec( this.theGeneticDataType); - for( GeneticTypeLevel aGeneticTypeLevel : GeneticTypeLevel.values()){ - if( aGeneticTypeLevel.getTheGeneticDataType().getTheDataTypeCategory().equals(DataTypeCategory.Discrete) && - this.satisfy(aGeneticTypeLevel) ){ - aDiscreteDataTypeSetSpec.addLevel(aGeneticTypeLevel); - } - } - return aDiscreteDataTypeSetSpec; - } else if (theGeneticDataType == GeneticDataTypes.Mutation && threshold instanceof String) { - return DiscreteDataTypeSetSpec.specificMutationDataTypeSetSpecGenerator((String)threshold); - } - - return null; - } - - // TODO: unit test - @Override - public boolean equals( Object aThat ) { - if ( this == aThat ) return true; - if ( !(aThat instanceof DiscreteDataTypeSpec) ) return false; - return - super.equals(aThat); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/Gene.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/Gene.java deleted file mode 100644 index 59c8d5c1f11..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/Gene.java +++ /dev/null @@ -1,49 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -public class Gene { - - /** - * indicates whether name is a valid gene name - * - * @param name - * @return - */ - static public boolean valid(String name) { - // TODO: remove this class when ASTwalker stops calling it - return true; - } - -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneSet.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneSet.java deleted file mode 100644 index ca02a095807..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneSet.java +++ /dev/null @@ -1,194 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; - -import org.mskcc.cbio.portal.util.EqualsUtil; - -/** - * Stores either a single gene with an OncoPrint spec, or a set of genes in - * order. - * - * @author Arthur Goldberg - */ -public class GeneSet { - private String name; - private boolean userGeneList; - private ArrayList Genes; - - public GeneSet() { - Genes = new ArrayList(); - } - - public GeneSet(String name) { - this.name = name; - Genes = new ArrayList(); - } - - /** - * If this set contains just one gene, return it. - * @return - */ - public GeneWithSpec getGene() { - //System.out.println( "getGene Genes.size(): " + Genes.size()); - - if (Genes.size() == 1) { - return Genes.get(0); - } else { - return null; - } - } - - public void addGeneWithSpec(GeneWithSpec aGeneWithSpec) { - if( null != aGeneWithSpec){ - Genes.add(aGeneWithSpec); - } - } - - /** - * return the names of genes in this GeneSet; may contain duplicates - * @return - */ - public ArrayList listOfGenes(){ - ArrayList allGenes = new ArrayList(); - for( GeneWithSpec gene: Genes ){ - if( null != gene.name ){ - allGenes.add( gene.name.toUpperCase()); - } - } - return allGenes; - } - - /** - * return the GeneWithSpec for the first gene with the given name, if any - * TODO: as the same gene could appear multiple times in a spec this should return a set of GeneWithSpec; for now return the 1st - * @param geneName - * @return first GeneWithSpec with a gene with that name, else if none, null - */ - public GeneWithSpec getGeneWithSpec( String geneName ){ - for( GeneWithSpec gene: Genes ){ - if( null != gene.name ){ - if( gene.name.equalsIgnoreCase( geneName ) ){ - return gene; - } - } - } - return null; - } - - @Override - public String toString(){ - StringBuffer sb = new StringBuffer(); - if (Genes.size() == 1) { - return( this.getGene().toString() ); - - } else { - if( this.getName() != null ){ - // sb.append( Genes.size() ).append(" genes in '").append(this.getName()).append("':\n"); - sb.append("\"").append(this.getName()).append("\"").append( userGeneListToString() ); - }else{ - if( this.userGeneList ){ - sb.append( userGeneListToString() ); - } else{ - // sb.append( Genes.size() ).append(" genes:").append("\n"); - for( GeneWithSpec gene: Genes ){ - sb.append(gene.toString()); - } - } - } - } - return sb.toString(); - } - - public void setUserGeneList(String name ) { - - this.userGeneList = true; - if( null != name ){ - this.setName(name); - } - //System.out.println( "setUserGeneList: " + this.toString()); - } - - private String userGeneListToString(){ - StringBuffer sb = new StringBuffer(); - sb.append("{\n"); - for( GeneWithSpec gene: Genes ){ - sb.append(gene.toString()); - } - sb.append("\n}\n"); - return sb.toString(); - } - - public void setName(String name) { - this.name = stripQuotes( name ); - this.userGeneList = true; - } - - private String stripQuotes( String s){ - return s.replaceAll( "\"", ""); - } - - public ArrayList getGenes() { - return Genes; - } - - public String getName() { - return name; - } - - public boolean isUserGeneList() { - return userGeneList; - } - - public void setUserGeneList(boolean userGeneList) { - this.userGeneList = userGeneList; - } - - /* - * TODO: finish implementing - this.Genes.equals(that.Genes); - - @Override - public boolean equals( Object aThat ) { - if ( this == aThat ) return true; - if ( !(aThat instanceof GeneSet) ) return false; - GeneSet that = (GeneSet) aThat; - return - EqualsUtil.areEqual(this.name, that.name) && - EqualsUtil.areEqual(this.userGeneList, that.userGeneList) && - this.Genes.equals(that.Genes); - } - */ - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneWithSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneWithSpec.java deleted file mode 100644 index cc8e08c88a1..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneWithSpec.java +++ /dev/null @@ -1,125 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import org.mskcc.cbio.portal.util.EqualsUtil; -import org.mskcc.cbio.portal.util.HashCodeUtil; - -/** - * a gene with an OncoPrint Spec - * @author Arthur Goldberg - */ -public class GeneWithSpec { - String name; - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec; - - public GeneWithSpec(String name) { - this.name = name; - } - - public GeneWithSpec(String name, - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec) { - this.name = name; - this.theOncoPrintGeneDisplaySpec = theResultFullDataTypeSpec; - // System.out.println( "Creating GeneWithSpec '" + name + "' with spec :" + theResultFullDataTypeSpec.toString()); - // TODO: should clone, or make certain that theResultFullDataTypeSpec isn't changed this.theResultFullDataTypeSpec = theResultFullDataTypeSpec.clone(); - } - - /** - * generate a GeneWithSpec; use a custom spec for the gene if it's initialized (non null) in theResultFullDataTypeSpec, - * otherwise use the default from theDefaultResultFullDataTypeSpec. - * Used by the parser. - * @param name - * @param theResultFullDataTypeSpec - * @param theDefaultResultFullDataTypeSpec - * @return the new GeneWithSpec, or null if name is null or both of the ResultFullDataTypeSpecs - */ - public static GeneWithSpec geneWithSpecGenerator(String name, OncoPrintGeneDisplaySpec theResultFullDataTypeSpec, - OncoPrintGeneDisplaySpec theDefaultResultFullDataTypeSpec){ - if( null != name ){ - if( null != theResultFullDataTypeSpec ){ - return new GeneWithSpec( name, theResultFullDataTypeSpec); - }else{ - if( null != theDefaultResultFullDataTypeSpec ){ - return new GeneWithSpec( name, theDefaultResultFullDataTypeSpec); - } - } - } - return null; - } - - public String getName() { - return name; - } - - public OncoPrintGeneDisplaySpec getTheOncoPrintGeneDisplaySpec() { - return theOncoPrintGeneDisplaySpec; - } - - public void setTheResultFullDataTypeSpec( - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec) { - // TODO: should clone, as above - this.theOncoPrintGeneDisplaySpec = theResultFullDataTypeSpec; - } - - @Override - public String toString(){ - StringBuffer sb = new StringBuffer(); - sb.append( this.name ); - if( null != this.theOncoPrintGeneDisplaySpec ){ - sb.append(": ").append( this.theOncoPrintGeneDisplaySpec.toString() ).append("\n"); - } - return sb.toString(); - } - - // TODO: TEST - @Override - public boolean equals( Object otherGeneWithSpec ) { - if( this == otherGeneWithSpec ) return true; - if ( !(otherGeneWithSpec instanceof GeneWithSpec ) ) return false; - GeneWithSpec that = (GeneWithSpec) otherGeneWithSpec; - return - EqualsUtil.areEqual( this.name, that.name) && - EqualsUtil.areEqual( this.theOncoPrintGeneDisplaySpec, that.theOncoPrintGeneDisplaySpec ); - } - - // TODO: TEST - @Override - public int hashCode( ) { - int result = HashCodeUtil.SEED; - result = HashCodeUtil.hash( result, this.name ); - result = HashCodeUtil.hash( result, this.theOncoPrintGeneDisplaySpec ); - return result; - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneticDataTypes.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneticDataTypes.java deleted file mode 100644 index 202a417601f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneticDataTypes.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; - -public enum GeneticDataTypes { - CopyNumberAlteration(DataTypeCategory.Discrete, "CNA"), - Expression(DataTypeCategory.Continuous, "MRNA microRNA"), - Mutation( DataTypeCategory.Discrete, ""), - Methylation(DataTypeCategory.Continuous, ""), - RPPA(DataTypeCategory.Continuous, "RPPA, prot"); - - private final DataTypeCategory theDataTypeCategory; - private String[] nicknames = null; - - /** - * @param theDataTypeCategory - * @param nicknames nicknames are alternative names that can be used to lookup GeneticDataTypes - */ - private GeneticDataTypes(DataTypeCategory theDataTypeCategory, String nicknames) { - this.theDataTypeCategory = theDataTypeCategory; - if( !nicknames.equals("")){ - this.nicknames = nicknames.split(" "); - }else{ - this.nicknames = new String[0]; - } - } - - public DataTypeCategory getTheDataTypeCategory() { - return theDataTypeCategory; - } - - public String[] getNicknames() { - return nicknames; - } - -}; \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneticTypeLevel.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneticTypeLevel.java deleted file mode 100644 index 816510258b0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/GeneticTypeLevel.java +++ /dev/null @@ -1,135 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -/** - * the levels within discrete GeneticDataTypes. - * Maps between GeneticDataTypes and the levels. - * @author Arthur Goldberg - */ -public enum GeneticTypeLevel{ - // this order must be maintained for DiscreteDataTypeSpec.satisfy - HomozygouslyDeleted (-2, GeneticDataTypes.CopyNumberAlteration, "Homdel"), - HemizygouslyDeleted (-1, GeneticDataTypes.CopyNumberAlteration, "Hetloss"), - Diploid (0, GeneticDataTypes.CopyNumberAlteration, "" ), - Gained (1, GeneticDataTypes.CopyNumberAlteration, "" ), - Amplified (2, GeneticDataTypes.CopyNumberAlteration, "" ), - Normal (0, GeneticDataTypes.Mutation, "" ), // TODO: IMPORTANT: verify that 0 & 1 are the right codes for mutation! - Mutated (1, GeneticDataTypes.Mutation, "" ); - - private final int code; - private final GeneticDataTypes theGeneticDataType; - private final String[] nicknames; - - private GeneticTypeLevel( int cNAcode, GeneticDataTypes theGeneticDataType, String nicknames ) { - this.code = cNAcode; - this.theGeneticDataType = theGeneticDataType; - if( !nicknames.equals("")){ - this.nicknames = nicknames.split(" "); - }else{ - this.nicknames = new String[0]; - } - } - - public String[] getNicknames() { - return nicknames; - } - - public GeneticDataTypes getTheGeneticDataType() { - return theGeneticDataType; - } - - /** - * map from a GeneticDataTypes and an integer code to a value for a discrete datatype - * - * @param code - * @return a GeneticTypeLevel enum for the code - * @throws IllegalArgumentException when the code isn't a valid code for a value - */ - public static GeneticTypeLevel convertCode( GeneticDataTypes aGeneticDataType, int code ) - throws IllegalArgumentException{ - for( GeneticTypeLevel v: GeneticTypeLevel.values() ){ - if( aGeneticDataType == v.theGeneticDataType && v.code == code ){ - return v; - } - } - throw new IllegalArgumentException( code + " is invalid code for levels in " + aGeneticDataType ); - } - - /** - * map from an integer CNA code to a GeneticTypeLevel for a CNA code. - * @param code - * @return a GeneticTypeLevel for a CNA code - * @throws IllegalArgumentException when the code isn't a valid code for a CNA - */ - public static GeneticTypeLevel convertCNAcode( int code ) throws IllegalArgumentException{ - return convertCode( GeneticDataTypes.CopyNumberAlteration, code ); - } - - /** - * map from an integer Mutation code to a GeneticTypeLevel for a Mutation code. - * @param code - * @return a GeneticTypeLevel for a Mutation code - * @throws IllegalArgumentException when the code isn't a valid code for a Mutation - */ - public static GeneticTypeLevel convertMutationcode( int code ) throws IllegalArgumentException{ - return convertCode( GeneticDataTypes.Mutation, code ); - } - - /** - * map from String name for a GeneticTypeLevel to a GeneticTypeLevel. Matches on any unique, case - * insensitive prefix or nickname. Cool, huh? - * - * @param name - * a unique prefix or nickname of a GeneticTypeLevel - * @return a GeneticTypeLevel enum for the name, if it is unique, null otherwise - * @throws IllegalArgumentException - */ - public static GeneticTypeLevel findDataTypeLevel(String name) - throws IllegalArgumentException { - - GeneticTypeLevel aGeneticTypeLevel = (GeneticTypeLevel) UniqueEnumPrefix - .findUniqueEnumMatchingPrefix(GeneticTypeLevel.class, name); - if (aGeneticTypeLevel == null) { - aGeneticTypeLevel = (GeneticTypeLevel) UniqueEnumPrefix - .findUniqueEnumWithNicknameMatchingPrefix(GeneticTypeLevel.class, - name); - } -// if (aGeneticTypeLevel == null) { -// throw new IllegalArgumentException( "Not a value for a GeneticTypeLevel: " + name ); -// }else{ - return aGeneticTypeLevel; -// } - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ListOfOncoPrintLangException.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ListOfOncoPrintLangException.java deleted file mode 100644 index b1458743a50..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ListOfOncoPrintLangException.java +++ /dev/null @@ -1,53 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -// TODO: delete -import java.util.ArrayList; - -/* - * this exception is thrown by a method that's declared to throw OncoPrintLangException (org.antlr.runtime.OncoPrintLangException extends java.lang.Exception) - */ -public class ListOfOncoPrintLangException extends RuntimeException { - - private ArrayList theOncoPrintLangExceptions; - - public ListOfOncoPrintLangException(ArrayList theOncoPrintLangExceptions) { - this.theOncoPrintLangExceptions = theOncoPrintLangExceptions; - } - - public ArrayList getTheOncoPrintLangExceptions() { - return theOncoPrintLangExceptions; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintGeneDisplaySpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintGeneDisplaySpec.java deleted file mode 100644 index 78b2de4b929..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintGeneDisplaySpec.java +++ /dev/null @@ -1,292 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.EnumMap; - -import org.mskcc.cbio.portal.util.Direction; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; - -/** - * Stores and implements the filter for a gene's data. - * Has a separate filter (ResultDataTypeSpec) for each genetic data type. - * satisfy() takes a data type, and optional data value, and indicates whether that value satisfies - * this filter. - * When used by the parser, generated by simplifying a FullDataTypeSpec. - * - * @author Arthur Goldberg - */ -public class OncoPrintGeneDisplaySpec -{ - - // may contain a ResultDataTypeSpec for each GeneticDataTypes.values() - private EnumMap finalDataTypeSpecs; - - /** - * construct a ResultFullDataTypeSpec that selects nothing - */ - public OncoPrintGeneDisplaySpec() { - finalDataTypeSpecs = new EnumMap(GeneticDataTypes.class); - } - - /** - * set to default spec; - */ - public void setDefault( double zScoreThreshold, double rppaScoreThrehold ){ - this.setDefault( GeneticDataTypes.CopyNumberAlteration ); - this.setDefault( GeneticDataTypes.Mutation ); - this.setDefaultExpression( zScoreThreshold, GeneticDataTypes.Expression ); - this.setDefaultExpression( rppaScoreThrehold, GeneticDataTypes.RPPA ); - } - - /** - * Set default levels for CopyNumberAlteration (AMP and HomDel) and Mutation (Mutated) - * @param theGeneticDataType - */ - public void setDefault( GeneticDataTypes theGeneticDataType ){ - ResultDataTypeSpec theResultDataTypeSpec; - - switch( theGeneticDataType ){ - - case CopyNumberAlteration: - theResultDataTypeSpec = new ResultDataTypeSpec( GeneticDataTypes.CopyNumberAlteration ); - theResultDataTypeSpec.setTheDiscreteDataTypeSetSpec( - new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HomozygouslyDeleted, GeneticTypeLevel.Amplified ) ); - finalDataTypeSpecs.put( GeneticDataTypes.CopyNumberAlteration, theResultDataTypeSpec ); - break; - - case Expression: - // TODO: s/b exception - break; - - case Methylation: - // TODO: s/b exception - break; - - case Mutation: - theResultDataTypeSpec = new ResultDataTypeSpec( GeneticDataTypes.Mutation ); - theResultDataTypeSpec.setTheDiscreteDataTypeSetSpec( - new DiscreteDataTypeSetSpec( GeneticDataTypes.Mutation, - GeneticTypeLevel.Mutated ) ); - finalDataTypeSpecs.put( GeneticDataTypes.Mutation, theResultDataTypeSpec ); - break; - - } - } - - /** - * set the default Expression/RPPA thresholds, <= and >= scoreThreshold - * @param scoreThreshold - */ - public void setDefaultExpression( double scoreThreshold, GeneticDataTypes theGeneticDataType ){ - ResultDataTypeSpec theResultDataTypeSpec = new ResultDataTypeSpec( theGeneticDataType ); - - theResultDataTypeSpec.setCombinedGreaterContinuousDataTypeSpec( new ContinuousDataTypeSpec( theGeneticDataType, - ComparisonOp.convertCode(">="), (float)scoreThreshold ) ); - - theResultDataTypeSpec.setCombinedLesserContinuousDataTypeSpec( new ContinuousDataTypeSpec( theGeneticDataType, - ComparisonOp.convertCode("<="), (float) -scoreThreshold ) ); - - finalDataTypeSpecs.put( theGeneticDataType, theResultDataTypeSpec ); - } - - /** - * get the ResultDataTypeSpec for theGeneticDataType, creating one if necessary. - * @param theGeneticDataType - * - * @return - */ - public ResultDataTypeSpec createResultDataTypeSpec( GeneticDataTypes theGeneticDataType ){ - ResultDataTypeSpec theResultDataTypeSpec = finalDataTypeSpecs.get(theGeneticDataType); - if( null != theResultDataTypeSpec){ - return theResultDataTypeSpec; - } - theResultDataTypeSpec = new ResultDataTypeSpec( theGeneticDataType ); - finalDataTypeSpecs.put(theGeneticDataType, theResultDataTypeSpec ); - return theResultDataTypeSpec; - } - - public ResultDataTypeSpec getResultDataTypeSpec( GeneticDataTypes theGeneticDataType ){ - return finalDataTypeSpecs.get(theGeneticDataType); - } - - public void setResultDataTypeSpec( GeneticDataTypes theGeneticDataType, ResultDataTypeSpec theResultDataTypeSpec ){ - finalDataTypeSpecs.put(theGeneticDataType, theResultDataTypeSpec ); - } - - /** - * satisfy for all data types. - * - * @param theGeneticDataType - * @return true if the data type defines an alteration for any level - */ - public boolean satisfy( GeneticDataTypes theGeneticDataType ){ - ResultDataTypeSpec theResultDataTypeSpec = finalDataTypeSpecs.get(theGeneticDataType); - return (theResultDataTypeSpec != null ); - } - - /** - * satisfy for continuous data types. - * - * @param theGeneticDataType - * @return true if the value is in one of the inequalities passed by the spec - */ - public boolean satisfy( GeneticDataTypes theGeneticDataType, float value ) - throws IllegalArgumentException{ - if( theGeneticDataType.getTheDataTypeCategory().equals(DataTypeCategory.Discrete)){ - throw new IllegalArgumentException("satisfy for continuous data types only takes continuous GeneticDataTypes"); - } - ResultDataTypeSpec theResultDataTypeSpec = finalDataTypeSpecs.get(theGeneticDataType); - if( null == theResultDataTypeSpec ){ - return false; - } - if( theResultDataTypeSpec.acceptAll ) { - return true; - } - if( theResultDataTypeSpec.combinedLesserContinuousDataTypeSpec != null && - finalDataTypeSpecs.get(theGeneticDataType).combinedLesserContinuousDataTypeSpec.satisfy(value) ){ - return true; - } - if( theResultDataTypeSpec.combinedGreaterContinuousDataTypeSpec != null && - finalDataTypeSpecs.get(theGeneticDataType).combinedGreaterContinuousDataTypeSpec.satisfy(value) ){ - return true; - } - return false; - } - - /** - * Another satisfy for continuous data types. - * Indicates whether a particular value is higher or lower (as specified by theDirection) than the upper - * or lower threshold. - *

- * @param theGeneticDataType - * @return true if the value is satisfied by the specified inequalities in the spec - */ - public boolean satisfy( GeneticDataTypes theGeneticDataType, float value, Direction theDirection ) - throws IllegalArgumentException{ - if( !theGeneticDataType.getTheDataTypeCategory().equals(DataTypeCategory.Continuous)){ - throw new IllegalArgumentException("satisfy for continuous data types only takes continuous GeneticDataTypes"); - } - ResultDataTypeSpec theResultDataTypeSpec = finalDataTypeSpecs.get(theGeneticDataType); - if( null == theResultDataTypeSpec ){ - return false; - } - if( theResultDataTypeSpec.acceptAll ) { - return true; - } - switch(theDirection){ - case higher: - return( theResultDataTypeSpec.combinedGreaterContinuousDataTypeSpec != null && - finalDataTypeSpecs.get(theGeneticDataType).combinedGreaterContinuousDataTypeSpec.satisfy(value) ); - case lower: - return( theResultDataTypeSpec.combinedLesserContinuousDataTypeSpec != null && - finalDataTypeSpecs.get(theGeneticDataType).combinedLesserContinuousDataTypeSpec.satisfy(value) ); - } - // unreachable code; keep compiler happy - // TODO: throw an exception - return false; - } - - /** - * satisfy for discrete data types. - * - * @param theGeneticDataType - * @param theGeneticTypeLevel - * @return indicates whether this display spec classifies the given data types' level as an alteration - * @throws IllegalArgumentException - */ - public boolean satisfy( GeneticDataTypes theGeneticDataType, Object level)//GeneticTypeLevel theGeneticTypeLevel ) - throws IllegalArgumentException { - if( !theGeneticDataType.getTheDataTypeCategory().equals(DataTypeCategory.Discrete)){ - throw new IllegalArgumentException("satisfy for discrete data types only takes Discrete GeneticDataTypes"); - } - - ResultDataTypeSpec theResultDataTypeSpec = finalDataTypeSpecs.get(theGeneticDataType); - if( null == theResultDataTypeSpec ){ - return false; - } - - if( theResultDataTypeSpec.acceptAll ) { - return true; - } - - if( theResultDataTypeSpec.theDiscreteDataTypeSetSpec != null && - theResultDataTypeSpec.theDiscreteDataTypeSetSpec.satisfy(level) ){ - return true; - } - - return false; - } - - /** - * Returns true if this OncoPrintGeneDisplaySpec specifies the given type and the other one does not, - * i.e., if the difference is positive. - * - * @param otherOncoPrintGeneDisplaySpec - * @param aGeneticDataType - * @return - */ - public boolean typeDifference( OncoPrintGeneDisplaySpec otherOncoPrintGeneDisplaySpec, - GeneticDataTypes aGeneticDataType ){ - - return (null != this.getResultDataTypeSpec(aGeneticDataType)) && (null == otherOncoPrintGeneDisplaySpec.getResultDataTypeSpec(aGeneticDataType)); - } - - @Override - public String toString() { - StringBuffer sb = new StringBuffer(); - for( GeneticDataTypes aGeneticDataTypes: GeneticDataTypes.values()){ - //out.format("checking %s%n", aGeneticDataTypes); - ResultDataTypeSpec theResultDataTypeSpec = this.finalDataTypeSpecs.get(aGeneticDataTypes); - if( null != theResultDataTypeSpec ){ - //out.format(" for gt %s%n", aGeneticDataTypes); - sb.append(theResultDataTypeSpec.toString()).append(" "); - } - } - return sb.append(";").toString(); - } - - /* - * TODO: fix - protected ResultFullDataTypeSpec clone(){ - ResultFullDataTypeSpec theResultFullDataTypeSpec = new ResultFullDataTypeSpec(); - theResultFullDataTypeSpec.defaultDataTypeSpec = this.defaultDataTypeSpec; - theResultFullDataTypeSpec.finalDataTypeSpecs = this.finalDataTypeSpecs.clone(); - return theResultFullDataTypeSpec; - } - */ - // TODO: COPY - // TODO: equals - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintLangException.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintLangException.java deleted file mode 100644 index 4633c35127f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintLangException.java +++ /dev/null @@ -1,43 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -/** - * used to report errors in the AST walker - * @author Arthur Goldberg - */ -public class OncoPrintLangException extends RuntimeException{ - public OncoPrintLangException( String msg){ - super(msg); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintSpec.java deleted file mode 100644 index 6bed9a41d9c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintSpec.java +++ /dev/null @@ -1,63 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; - -public class OncoPrintSpec { - - // set of these, for each data type, subject to multiple constraints - // no constraints for a dataType means show all values - // at most 2 constraints for any dataType, which must define 1 or 2 non-empty intervals - ArrayList theContinuousDataTypeSpec; - ArrayList theDiscreteDataTypeSpec; - - public OncoPrintSpec() { - theContinuousDataTypeSpec = new ArrayList(); - theDiscreteDataTypeSpec = new ArrayList(); - } - - @Override - public String toString(){ - StringBuffer sb = new StringBuffer(); - // TODO: order by DataType - for( ContinuousDataTypeSpec aContinuousDataTypeSpec : theContinuousDataTypeSpec ){ - sb.append( aContinuousDataTypeSpec.toString() ); - } - for( DiscreteDataTypeSpec aDiscreteDataTypeSpec : theDiscreteDataTypeSpec ){ - sb.append( aDiscreteDataTypeSpec.toString() ); - } - return sb.toString(); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintSpecification.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintSpecification.java deleted file mode 100644 index f51ab888d42..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/OncoPrintSpecification.java +++ /dev/null @@ -1,171 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; -import static java.lang.System.out; - -public class OncoPrintSpecification { - ArrayList GeneSets; - - public OncoPrintSpecification() { - GeneSets = new ArrayList(); - } - - /** - * create an OncoPrintSpecification that has the OncoPrintGeneDisplaySpec default filter for a set of genes. - * a convenience constructor. - * @param genes - */ - public OncoPrintSpecification(String[] genes) { - OncoPrintGeneDisplaySpec aDefaultOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - aDefaultOncoPrintGeneDisplaySpec.setDefault( 1.0, 1.0 ); - constructOncoPrintSpecification( genes, aDefaultOncoPrintGeneDisplaySpec ); - } - - /** - * create an OncoPrintSpecification that has the given OncoPrintGeneDisplaySpec filter on all genes in an array. - * @param genes - * @param theOncoPrintGeneDisplaySpec - */ - public OncoPrintSpecification(String[] genes, OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec ) { - constructOncoPrintSpecification( genes, theOncoPrintGeneDisplaySpec ); - } - - private void constructOncoPrintSpecification(String[] genes, OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec ) { - this.GeneSets = new ArrayList(); - GeneSet aGeneSet = new GeneSet( ); - for( String g : genes){ - aGeneSet.addGeneWithSpec( new GeneWithSpec( g, theOncoPrintGeneDisplaySpec ) ); - } - this.add(aGeneSet); - } - - public ArrayList getGeneSets() { - return GeneSets; - } - - public void add( GeneSet aGeneSet ){ - this.GeneSets.add(aGeneSet); - } - - /** - * return the names of genes in this spec; may contain duplicates - * - * @return - */ - public ArrayList listOfGenes() { - ArrayList allGenes = new ArrayList(); - for (GeneSet aGeneSet : this.GeneSets) { - allGenes.addAll(aGeneSet.listOfGenes()); - } - return allGenes; - } - - public boolean containsGene(String geneName) { - return this.listOfGenes().contains(geneName); - } - - /** - * return the GeneWithSpec for the first gene with the given name, if any - * TODO: as the same gene could appear multiple times in a spec this should return a set of GeneWithSpec; for now return the 1st - * @param geneName - * @return - */ - public GeneWithSpec getGeneWithSpec(String geneName) { - for (GeneSet aGeneSet : this.GeneSets) { - GeneWithSpec aGeneWithSpec = aGeneSet.getGeneWithSpec(geneName); - if (null != aGeneWithSpec) { - return aGeneWithSpec; - } - } - return null; - } - - /** - * Get the union of all possible alterations. - * This is used to determine legends for figures (like the OncoPrint) - * that are configured by an OncoPrintSpecification, and overall errors in the OncoPrintSpecification. - *

- * E.g., if this OncoPrintSpecification describes two genes, and one gene shows AMP and Mutations, and the other AMP and under-expression below -2, - * then this will return an OncoPrintGeneDisplaySpec that would show AMP, Mutations, and under-expression below -2. - * The point is that a legend shouldn't list an alteration that cannot be presented. - *

- * @return the union of all possible alterations - */ - // TODO: HIGH: UNIT TEST in OncoSpec - public OncoPrintGeneDisplaySpec getUnionOfPossibleLevels() { - - ParsedFullDataTypeSpec aParsedFullDataTypeSpec = new ParsedFullDataTypeSpec(); - - // use cleanUpInput(), the 'unioning' code that cleans up the input from the parser - // for all gene sets, for all genes, for all genetic data types, get discrete or continuous type specs - for( GeneSet aGeneSet: this.GeneSets){ - for( GeneWithSpec aGeneWithSpec: aGeneSet.getGenes()){ - for( GeneticDataTypes theGeneticDataType : GeneticDataTypes.values()){ - - ResultDataTypeSpec theResultDataTypeSpec = - aGeneWithSpec.theOncoPrintGeneDisplaySpec.getResultDataTypeSpec(theGeneticDataType); - if( null != theResultDataTypeSpec ){ - ResultDataTypeSpec copyOfResultDataTypeSpec = ResultDataTypeSpec.newInstance( theResultDataTypeSpec ); - if( copyOfResultDataTypeSpec.isAcceptAll() ){ - aParsedFullDataTypeSpec.addSpec( new ConcreteDataTypeSpec( theGeneticDataType ) ); - }else{ - aParsedFullDataTypeSpec.addSpec( copyOfResultDataTypeSpec.getTheDiscreteDataTypeSetSpec() ); - aParsedFullDataTypeSpec.addSpec( copyOfResultDataTypeSpec.getCombinedLesserContinuousDataTypeSpec() ); - aParsedFullDataTypeSpec.addSpec( copyOfResultDataTypeSpec.getCombinedGreaterContinuousDataTypeSpec() ); - } - } - } - } - } - - OncoPrintGeneDisplaySpec tempOncoPrintGeneDisplaySpec = aParsedFullDataTypeSpec.cleanUpInput(); - return tempOncoPrintGeneDisplaySpec; - } - - @Override - public String toString(){ - StringBuffer sb = new StringBuffer(); - for( GeneSet aGeneSet: this.GeneSets ) { - sb.append(aGeneSet.toString() + "\n"); - } - return sb.toString(); - } - // TODO: COPY - // TODO: equals - @Override public final Object clone() throws CloneNotSupportedException { - throw new CloneNotSupportedException(); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ParsedFullDataTypeSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ParsedFullDataTypeSpec.java deleted file mode 100644 index ee70ef09d3e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ParsedFullDataTypeSpec.java +++ /dev/null @@ -1,103 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; -import java.util.EnumMap; - -/** - * Holds a raw full data type spec, as produced by the parser production - * fullDataTypeSpec. creates the permanent - * - * @author Arthur Goldberg - * - */ -public class ParsedFullDataTypeSpec { - - private ArrayList theDataTypeSpecs; // the parser loads all - // dataTypeSpecs in here - - public ParsedFullDataTypeSpec() { - this.theDataTypeSpecs = new ArrayList(); - } - - public void addSpec(DataTypeSpec aDataTypeSpec) { - if( aDataTypeSpec != null ){ - this.theDataTypeSpecs.add(aDataTypeSpec); - } - } - - /** - * clean up from parse. - * - * I. Organize: collect DataTypeSpecs for each data type; then simplify - */ - public OncoPrintGeneDisplaySpec cleanUpInput() { - - EnumMap organizedDataTypeSpecs = - new EnumMap( - GeneticDataTypes.class); - - for (GeneticDataTypes aGeneticDataType : GeneticDataTypes.values()) { - organizedDataTypeSpecs.put(aGeneticDataType, new TempFullDataTypeSpec()); - } - - // copy all the DataTypeSpecs into the TempFullDataTypeSpec, preparing for clean up - for (DataTypeSpec aDataTypeSpec : this.theDataTypeSpecs) { - organizedDataTypeSpecs.get(aDataTypeSpec.theGeneticDataType).addSpec(aDataTypeSpec); - } - - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec = new OncoPrintGeneDisplaySpec(); - - for (GeneticDataTypes aGeneticDataType : GeneticDataTypes.values()) { - - if( 0 < organizedDataTypeSpecs.get(aGeneticDataType).getTheDataTypeSpecs().size() ){ - organizedDataTypeSpecs.get(aGeneticDataType).cleanUpDataType( - theResultFullDataTypeSpec.createResultDataTypeSpec(aGeneticDataType), - aGeneticDataType); - } - - } - return theResultFullDataTypeSpec; - } - - @Override - public String toString() { - StringBuffer sb = new StringBuffer(); - for( DataTypeSpec aDataTypeSpec: this.theDataTypeSpecs){ - sb.append(aDataTypeSpec.toString()).append("\n"); - } - return sb.toString(); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ParserOutput.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ParserOutput.java deleted file mode 100644 index 22518a80161..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ParserOutput.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; - -/** - * the data returned by a call to the parser - * @author Arthur Goldberg - */ -public class ParserOutput { - ArrayList syntaxErrors; - ArrayList semanticsErrors; - OncoPrintSpecification theOncoPrintSpecification; - - public ParserOutput(ArrayList syntaxErrors, ArrayList semanticsErrors, - OncoPrintSpecification theOncoPrintSpecification) { - // TODO: make sure parser cannot store nulls in these 2, and remove the conditionals - if( null == syntaxErrors ){ - this.syntaxErrors = new ArrayList(); - }else{ - this.syntaxErrors = syntaxErrors; - } - if( null == semanticsErrors ){ - this.semanticsErrors = new ArrayList(); - }else{ - this.semanticsErrors = semanticsErrors; - } - this.theOncoPrintSpecification = theOncoPrintSpecification; - } - - public ArrayList getSyntaxErrors() { - return syntaxErrors; - } - - public ArrayList getSemanticsErrors() { - return semanticsErrors; - } - - public OncoPrintSpecification getTheOncoPrintSpecification() { - return theOncoPrintSpecification; - } - -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ResultDataTypeSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ResultDataTypeSpec.java deleted file mode 100644 index 6e0706ce67c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/ResultDataTypeSpec.java +++ /dev/null @@ -1,155 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import org.mskcc.cbio.portal.util.EqualsUtil; - -/** - * holds a data type spec; an OncoPrintGeneDisplaySpec contains one of these for each data type. - * - * @author Arthur Goldberg - */ -public class ResultDataTypeSpec { - GeneticDataTypes theGeneticDataType; - boolean acceptAll; - DiscreteDataTypeSetSpec theDiscreteDataTypeSetSpec; - - // means that all values that exceed the threshold in combinedGreaterContinuousDataTypeSpec indicate alteration - ContinuousDataTypeSpec combinedGreaterContinuousDataTypeSpec; - // same meaning, but lesser - ContinuousDataTypeSpec combinedLesserContinuousDataTypeSpec; - - public ResultDataTypeSpec(GeneticDataTypes theGeneticDataType) { - this.theGeneticDataType = theGeneticDataType; - } - - /** - * Alternative style for a copy constructor, using a static newInstance - * method. - */ - public static ResultDataTypeSpec newInstance( ResultDataTypeSpec aResultDataTypeSpec ) { - if( null == aResultDataTypeSpec ){ - return null; - } - ResultDataTypeSpec theNewResultDataTypeSpec = new ResultDataTypeSpec( aResultDataTypeSpec.theGeneticDataType ); - theNewResultDataTypeSpec.setAcceptAll( aResultDataTypeSpec.isAcceptAll() ); - theNewResultDataTypeSpec.setTheDiscreteDataTypeSetSpec( - DiscreteDataTypeSetSpec.newInstance( aResultDataTypeSpec.getTheDiscreteDataTypeSetSpec() ) ); - - theNewResultDataTypeSpec.setCombinedGreaterContinuousDataTypeSpec( - ContinuousDataTypeSpec.newInstance( aResultDataTypeSpec.getCombinedGreaterContinuousDataTypeSpec() ) ); - - theNewResultDataTypeSpec.setCombinedLesserContinuousDataTypeSpec( - ContinuousDataTypeSpec.newInstance( aResultDataTypeSpec.getCombinedLesserContinuousDataTypeSpec() ) ); - - return theNewResultDataTypeSpec; - } - - public DiscreteDataTypeSetSpec getTheDiscreteDataTypeSetSpec() { - return theDiscreteDataTypeSetSpec; - } - - public void setAcceptAll(boolean acceptAll) { - this.acceptAll = acceptAll; - } - - public boolean isAcceptAll() { - return acceptAll; - } - - public void setCombinedGreaterContinuousDataTypeSpec( - ContinuousDataTypeSpec combinedGreaterContinuousDataTypeSpec) { - this.combinedGreaterContinuousDataTypeSpec = combinedGreaterContinuousDataTypeSpec; - } - - public void setCombinedLesserContinuousDataTypeSpec( - ContinuousDataTypeSpec combinedLesserContinuousDataTypeSpec) { - this.combinedLesserContinuousDataTypeSpec = combinedLesserContinuousDataTypeSpec; - } - - public void setTheDiscreteDataTypeSetSpec( - DiscreteDataTypeSetSpec theDiscreteDataTypeSetSpec) { - this.theDiscreteDataTypeSetSpec = theDiscreteDataTypeSetSpec; - } - - public ContinuousDataTypeSpec getCombinedGreaterContinuousDataTypeSpec() { - return combinedGreaterContinuousDataTypeSpec; - } - - public ContinuousDataTypeSpec getCombinedLesserContinuousDataTypeSpec() { - return combinedLesserContinuousDataTypeSpec; - } - - @Override - public String toString() { - if( acceptAll ){ - return theGeneticDataType.toString(); - } - - switch( this.theGeneticDataType.getTheDataTypeCategory()){ - case Continuous: - StringBuffer sb = new StringBuffer(); - if( combinedLesserContinuousDataTypeSpec != null ){ - sb.append(combinedLesserContinuousDataTypeSpec.toString()).append(" "); - } - if( combinedGreaterContinuousDataTypeSpec != null ){ - sb.append(combinedGreaterContinuousDataTypeSpec.toString()).append(" "); - } - return sb.append(" ").toString(); - - case Discrete: - return theDiscreteDataTypeSetSpec.toString()+" "; - } - // keep compiler happy - (new UnreachableCodeException( "")).printStackTrace(); - return "compiler happy"; - } - - @Override public final Object clone() throws CloneNotSupportedException { - throw new CloneNotSupportedException(); - } - - @Override - public boolean equals( Object aThat ) { - if( this == aThat ) return true; - if ( !(aThat instanceof ResultDataTypeSpec ) ) return false; - ResultDataTypeSpec that = (ResultDataTypeSpec) aThat; - return - EqualsUtil.areEqual( this.theGeneticDataType, that.theGeneticDataType) && - EqualsUtil.areEqual( this.acceptAll, that.acceptAll ) && - EqualsUtil.areEqual( this.theDiscreteDataTypeSetSpec, that.theDiscreteDataTypeSetSpec ) && - EqualsUtil.areEqual( this.combinedGreaterContinuousDataTypeSpec, that.combinedGreaterContinuousDataTypeSpec ) && - EqualsUtil.areEqual( this.combinedLesserContinuousDataTypeSpec, that.combinedLesserContinuousDataTypeSpec ); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TempFullDataTypeSpec.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TempFullDataTypeSpec.java deleted file mode 100644 index aee09a390a4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TempFullDataTypeSpec.java +++ /dev/null @@ -1,174 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; - -/** - * A temporary class, created by RawFullDataTypeSpec while it is cleaning up parser - * output from fullDataTypeSpec and creating the ResultFullDataTypeSpec. - * - * @author Arthur Goldberg - * - */ -public class TempFullDataTypeSpec { - private ArrayList theDataTypeSpecs; - private ArrayList theDiscreteDataTypeSpecs; - private ArrayList theDiscreteDataTypeSetSpecs; - private ArrayList theConcreteDataTypeSpecs; - private ArrayList theContinuousDataTypeSpecs; - - public TempFullDataTypeSpec() { - initCollections(); - } - - private void initCollections(){ - this.theDataTypeSpecs = new ArrayList(); - this.theDiscreteDataTypeSpecs = new ArrayList(); - this.theDiscreteDataTypeSetSpecs = new ArrayList(); - this.theConcreteDataTypeSpecs = new ArrayList(); - this.theContinuousDataTypeSpecs = new ArrayList(); - } - - public void addSpec(DataTypeSpec aDataTypeSpec){ - this.theDataTypeSpecs.add(aDataTypeSpec); - } - - /** - * Given a FullDataTypeSpec which contains DataTypeSpecs for a single GeneticDataTypes, simplify them as much as possible, - * putting the result into theResultDataTypeSpec. - *

- * TODO: check that the FullDataTypeSpec which contains DataTypeSpecs for a single GeneticDataTypes - *

- * II. simplify by eliminating redundant constraints; not an error - * 1) if contains a ConcreteDataTypeSpec, discard all other narrowing DataTypeSpecs; should we issue a warning? - * 2) otherwise, - * A) For discrete data types: - * a) convert all DiscreteDataTypeSpecs into creating DiscreteDataTypeSetSpecs - * b) combine multiple DiscreteDataTypeSetSpecs into a single DiscreteDataTypeSetSpec that accepts anything the DiscreteDataTypeSetSpecs - * would have accepted; not an error - * Done. - *

- * B) For continuous data types: - * a) combine together redundant ContinuousDataTypeSpecs - * Done. - *

- * TODO: eliminate DiscreteDataTypeSpecs entirely, creating DiscreteDataTypeSetSpecs instead - */ - void cleanUpDataType( ResultDataTypeSpec theResultDataTypeSpec, GeneticDataTypes theGeneticDataType ){ - - // organize by class - for( DataTypeSpec aDataTypeSpec : this.theDataTypeSpecs){ - - if( aDataTypeSpec instanceof ConcreteDataTypeSpec) { - this.theConcreteDataTypeSpecs.add( (ConcreteDataTypeSpec)aDataTypeSpec ); - - } else if( aDataTypeSpec instanceof ContinuousDataTypeSpec){ - this.theContinuousDataTypeSpecs.add( (ContinuousDataTypeSpec)aDataTypeSpec ); - - } else if( aDataTypeSpec instanceof DiscreteDataTypeSetSpec) { - this.theDiscreteDataTypeSetSpecs.add( (DiscreteDataTypeSetSpec)aDataTypeSpec ); - - } else if( aDataTypeSpec instanceof DiscreteDataTypeSpec) { - this.theDiscreteDataTypeSpecs.add( (DiscreteDataTypeSpec)aDataTypeSpec ); - - } else { - // TODO: throw exception - System.err.println("unexpected type"); - } - } - - // * 1) if contains a ConcreteDataTypeSpec, discard all other narrowing DataTypeSpecs; should we issue a warning? - if( 0 < this.theConcreteDataTypeSpecs.size() ){ - this.theContinuousDataTypeSpecs.clear(); - this.theDiscreteDataTypeSetSpecs.clear(); - this.theDiscreteDataTypeSpecs.clear(); - theResultDataTypeSpec.setAcceptAll(true); - return; - } - - /* - * A) For discrete data types: - * a) convert all DiscreteDataTypeSpecs into DiscreteDataTypeSetSpecs - */ - for( DiscreteDataTypeSpec aDiscreteDataTypeSpec : this.theDiscreteDataTypeSpecs ){ - this.theDiscreteDataTypeSetSpecs.add( aDiscreteDataTypeSpec.convertToDiscreteDataTypeSetSpec()); - } - this.theDiscreteDataTypeSpecs.clear(); - - /* - * b) combine multiple DiscreteDataTypeSetSpecs into a single DiscreteDataTypeSetSpec that accepts anything the DiscreteDataTypeSetSpecs - * would have accepted; not a language error - */ - DiscreteDataTypeSetSpec combinedDiscreteDataTypeSetSpec = new DiscreteDataTypeSetSpec( theGeneticDataType ); - for( DiscreteDataTypeSetSpec aDiscreteDataTypeSetSpec : this.theDiscreteDataTypeSetSpecs){ - combinedDiscreteDataTypeSetSpec.combine( aDiscreteDataTypeSetSpec ); - } - this.theDiscreteDataTypeSetSpecs.clear(); - theResultDataTypeSpec.setTheDiscreteDataTypeSetSpec(combinedDiscreteDataTypeSetSpec); - - /* - * B) For continuous data types: - * a) combine together redundant ContinuousDataTypeSpecs - */ - ContinuousDataTypeSpec combinedGreaterContinuousDataTypeSpec = null; - ContinuousDataTypeSpec combinedLesserContinuousDataTypeSpec = null; - for( ContinuousDataTypeSpec aContinuousDataTypeSpec : this.theContinuousDataTypeSpecs){ - switch( aContinuousDataTypeSpec.getComparisonOp().getTheComparisonOpDirection()){ - case Smaller: - if( null == combinedLesserContinuousDataTypeSpec ){ - combinedLesserContinuousDataTypeSpec = aContinuousDataTypeSpec; - }else{ - combinedLesserContinuousDataTypeSpec.combine( aContinuousDataTypeSpec ); - } - break; - - case Bigger: - if( null == combinedGreaterContinuousDataTypeSpec ){ - combinedGreaterContinuousDataTypeSpec = aContinuousDataTypeSpec; - }else{ - combinedGreaterContinuousDataTypeSpec.combine( aContinuousDataTypeSpec ); - } - break; - - } - } - theResultDataTypeSpec.setCombinedLesserContinuousDataTypeSpec(combinedLesserContinuousDataTypeSpec); - theResultDataTypeSpec.setCombinedGreaterContinuousDataTypeSpec(combinedGreaterContinuousDataTypeSpec); - } - - public ArrayList getTheDataTypeSpecs() { - return theDataTypeSpecs; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/UniqueEnumPrefix.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/UniqueEnumPrefix.java deleted file mode 100644 index 4842633c0b5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/UniqueEnumPrefix.java +++ /dev/null @@ -1,150 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.lang.reflect.InvocationTargetException; -import java.lang.reflect.Method; -import static java.lang.System.out; - -/** - * Given an enum and a String, - * map any unique prefix to a value of the enum. Cool, huh? - * return null if not found - * @author Arthur Goldberg - * - */ -public class UniqueEnumPrefix { - - public static Object findUniqueEnumMatchingPrefix( Class theEnum, String abbrev ) - throws IllegalArgumentException{ - - if ( null == theEnum || !theEnum.isEnum()) { - throw new IllegalArgumentException("Not an enum: " + theEnum ); - } - - if( null == abbrev ) { - throw new IllegalArgumentException("abbrev is null" ); - } - - Object maybe = null; - for (Object o : theEnum.getEnumConstants() ) { - //out.format( "findUniqueEnumMatchingPrefix: matching '%s' with '%s'%n", o.toString(), abbrev ); - - if (o.toString().regionMatches(true, 0, abbrev, 0, abbrev.length())) { - //out.format( "findUniqueEnumMatchingPrefix: '%s' matches '%s'%n", o.toString(), abbrev ); - if (maybe != null) { - - // Another match; not unique - //out.format( "findUniqueEnumMatchingPrefix: ret null%n"); - return null; - } else { - maybe = o; - } - } - } - //out.format( "findUniqueEnumMatchingPrefix: ret %s%n", maybe.toString()); - return maybe; - } - - static String convertError = "Invalid abbreviation, does not match either a unique substring or a unique prefix: "; - - /** - * find unique name prefix in nicknames of an enum. - * if theEnum is an enum with a getNicknames method look for unique prefix matches to the - * nicknames. - * - * @param theEnum an enum that implements getNicknames() which returns String[] - * @param abbrev an abbreviation that might match a unique prefix of a nickname - * @return the enum constant if a unique match, otherwise null - * @throws IllegalArgumentException - */ - public static Object findUniqueEnumWithNicknameMatchingPrefix(Class theEnum, - String abbrev) throws IllegalArgumentException { - - if ( null == theEnum || !theEnum.isEnum()) { - throw new IllegalArgumentException("Not an enum: " + theEnum); - } - //out.format("invoking uniqueEnumNicknamePrefix on %s%n", theEnum.getName()); - - if( null == abbrev ) { - throw new IllegalArgumentException("abbrev is null" ); - } - - try { - Object possibleEnumConst = null; - Class[] argTypes = new Class[] {}; - Method getNicknames = theEnum.getDeclaredMethod("getNicknames", - argTypes); - - for (Object enumConstant : theEnum.getEnumConstants()) { - - // match any string for a given enum constant - String[] nicknames = null; - nicknames = (String[]) getNicknames.invoke(enumConstant); - - Object thisEnumConst = null; - if (nicknames != null) { - for (String nickname : nicknames) { - if (nickname.regionMatches(true, 0, abbrev, 0, - abbrev.length())) { - thisEnumConst = enumConstant; - // out.format("%s matches %s for %s%n", nickname, abbrev, enumConstant.toString()); - } - } - } - - if (thisEnumConst != null) { - // don't match multiple enum constants - if (possibleEnumConst != null) { - return null; - } else { - possibleEnumConst = thisEnumConst; - } - } - } - return possibleEnumConst; - } catch (SecurityException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } catch (NoSuchMethodException e) { - throw new IllegalArgumentException("Enum must implement 'getNicknames()': " + theEnum); - } catch (IllegalAccessException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } catch (InvocationTargetException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } - return null; // for compiler - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/UnreachableCodeException.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/UnreachableCodeException.java deleted file mode 100644 index f542d1063b7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/UnreachableCodeException.java +++ /dev/null @@ -1,41 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -public class UnreachableCodeException extends Exception { - - public UnreachableCodeException(String arg0) { - super(arg0); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/Utilities.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/Utilities.java deleted file mode 100644 index 42a64a1ca76..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/Utilities.java +++ /dev/null @@ -1,77 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; - -/** - * use an ArrayList as a temp buffer; ugly, but works - * @author Arthur Goldberg - */ -public class Utilities { - // static is OK, as a new parser is instantiated for each user / input - // TODO: HIGH: UNIT TEST in OncoSpec - // TODO: find another way to save syntax errors! - - /* - static ArrayList errorMessages = new ArrayList(); - - static public void clearErrorMessageList() { - errorMessages.clear(); - } - - public static ArrayList getErrorMessages() { - return errorMessages; - } - */ - - /** - * So that users do not need to complete fullDataTypeSpecs with a semicolon, append a ';' at the end of each line that contains a ':' that isn't - * followed by a ';'. assume a new line at the end of the input string. - *

- * @param input - * @return the new string - */ - public static String appendSemis( String input ){ - // TODO: use system new line, as provided by String NL = System.getProperty("line.separator"); - - // append \n to final line. - String withNL = input+"\n"; - // # add missing ;s at end of line where needed, - String appendedSemis = withNL.replaceAll( ":([^;\n]*)\n", ":$1;\n"); - // then remove added \n - return appendedSemis.substring(0, appendedSemis.length() - 1 ); - } - - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecAST.g b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecAST.g deleted file mode 100644 index eb15273f2ff..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecAST.g +++ /dev/null @@ -1,249 +0,0 @@ -grammar completeOncoPrintSpecAST; - -options {output=AST;} -@parser::header { - package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - import java.util.ArrayList; - import org.mskcc.cbio.portal.oncoPrintSpecLanguage.*; - import static java.lang.System.out; - import java.io.PrintStream; -} -@lexer::header{ - package org.mskcc.cbio.portal.oncoPrintSpecLanguage; -} - -@members{ - /* - DAMN, won't work; this returns only an AST, and we don't want to throw exceptions because then the parse won't complete - - Error handling strategy: We serve two purposes, - 1) when calling the root production, oncoPrintSpecification, return a list of all errors, each a String; - similarly for the tree grammar; thus if syntax error(s) occur, the driver program gets all of them, and doesn't call the - tree parser; and if semantics error(s) occur, the driver will get all of them - 2) when calling any other production, as for unit testing, throw an RecognitionException - Implementation: - a) in reportError, determine whether we're in case 1 or 2, and collect or throw accordingly - b) in the root production if errors have been thrown, rethrow the list - */ - - // get a list to hold errors - ArrayList errorMessages = new ArrayList();//Utilities.getErrorMessages(); - - // override to make comprehensible errors for users - public void reportError(RecognitionException e){ - // if we've already reported an error and have not matched a token - // yet successfully, don't report any errors. - if ( state.errorRecovery ) { - //System.err.print("[SPURIOUS] "); - return; - } - state.syntaxErrors++; // don't count spurious - state.errorRecovery = true; - displayRecognitionError(this.getTokenNames(), e); - } - - public void displayRecognitionError(String[] tokenNames, RecognitionException e) { - // String hdr = getErrorHeader(e); - int normalPos = e.charPositionInLine + 1; - String hdr = "Syntax error at char " + normalPos + " of line "+e.line+": "; - String msg = getErrorMessage(e, tokenNames); - // TODO: change this to print to a tmp file - // get ASTparser to write errors to a PrintStream, connected to a file - // System.err.println( hdr + msg); - errorMessages.add( hdr + msg ); - } - - public String getErrorMessage(RecognitionException e, String[] tokenNames) { - String msg = e.getMessage(); - // emitErrorMessage( "APG received " + e.getClass().getName() + " with token " + e.token.getText() ); - - if (e instanceof UnwantedTokenException) { - UnwantedTokenException ute = (UnwantedTokenException) e; - String tokenName = ""; - if (ute.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[ute.expecting]; - } - msg = "extraneous input " + getTokenErrorDisplay(ute.getUnexpectedToken()) + " expecting " - + tokenName; - } else if (e instanceof MissingTokenException) { - MissingTokenException mte = (MissingTokenException) e; - String tokenName = ""; - if (mte.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[mte.expecting]; - } - msg = "missing " + tokenName + " at " + getTokenErrorDisplay(e.token); - } else if (e instanceof MismatchedTokenException) { - MismatchedTokenException mte = (MismatchedTokenException) e; - String tokenName = ""; - if (mte.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[mte.expecting]; - } - msg = "mismatched input " + getTokenErrorDisplay(e.token) + " expecting " + tokenName; - } else if (e instanceof MismatchedTreeNodeException) { - MismatchedTreeNodeException mtne = (MismatchedTreeNodeException) e; - String tokenName = ""; - if (mtne.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[mtne.expecting]; - } - msg = "mismatched tree node: " + mtne.node + " expecting " + tokenName; - } else if (e instanceof NoViableAltException) { - // NoViableAltException nvae = (NoViableAltException)e; - // for development, can add - // "decision=<<"+nvae.grammarDecisionDescription+">>" - // and "(decision="+nvae.decisionNumber+") and - // "state "+nvae.stateNumber - msg = "Syntax error at " + getTokenErrorDisplay(e.token); - } else if (e instanceof EarlyExitException) { - // EarlyExitException eee = (EarlyExitException)e; - // for development, can add "(decision="+eee.decisionNumber+")" - // TODO: better error message - msg = "found empty list at " // "required (...)+ loop did not match anything at input " - + getTokenErrorDisplay(e.token); - } else if (e instanceof MismatchedSetException) { - MismatchedSetException mse = (MismatchedSetException) e; - msg = "mismatched input " + getTokenErrorDisplay(e.token) + "."; // + " expecting set " + mse.expecting; - } else if (e instanceof MismatchedNotSetException) { - MismatchedNotSetException mse = (MismatchedNotSetException) e; - msg = "mismatched input " + getTokenErrorDisplay(e.token) + "."; // + " expecting set " + mse.expecting; - } else if (e instanceof FailedPredicateException) { - FailedPredicateException fpe = (FailedPredicateException) e; - // msg = "rule " + fpe.ruleName + " failed predicate: {" + fpe.predicateText + "}?"; - // msg = "token '" + e.token.getText() + "' is not a valid '" + lookupDataTypeName( fpe.ruleName ) +"'."; - } - return msg; - } -} - -// everything is a userGeneList, including a gene by itself -oncoPrintSpecification - : - ( userGeneList )+ -> userGeneList+ - ; - -userGeneList - : - geneList - | - ( '{' geneList '}' - | STRING '{' geneList '}' ) -> ^(UserGeneList geneList STRING?) - ; -UserGeneList : '&userGeneList'; - -// a list of genes and/or default specs -geneList - : - // build a list of interleaved genes and defaultDataTypeSpecs - // as Parr TDAR says, at start of 7.4 - // "the automatic AST construction mechanism ... [automatically] builds a tree, albeit a flat one." - ( individualGene | defaultDataTypeSpec )+ - ; - -// a gene and its optional data type specification -individualGene - : - ID fullDataTypeSpec? -> ^(IndividualGene ID fullDataTypeSpec?) - ; -IndividualGene - : '&individualGene'; - -// sets the global default -defaultDataTypeSpec - : 'DATATYPES' - fullDataTypeSpec -> ^(DefaultDataTypeSpec fullDataTypeSpec) - ; -DefaultDataTypeSpec - : '&defaultDataTypeSpec'; - -// all the data type specs for a gene or DATATYPES -fullDataTypeSpec - : ':' ( dataTypeSpec )+ ';' -> dataTypeSpec+ - ; - -// a single data type spec -// TODO: very strange; dataTypeSpec will not parse an ID, but fullDataTypeSpec will parse it; bizarre -dataTypeSpec - : - ID -> ^(DataTypeOrLevel ID) // may be discrete or continuous dataType or discrete level - | discreteDataType - | continuousDataTypeInequality - ; -DataTypeOrLevel - : '&DataTypeOrLevel' ; - -// a discrete data type, currently either CNA or mutation -discreteDataType - : - ( ID COMPARISON_OP ID )-> ^(DiscreteDataType ID COMPARISON_OP ID ) // all discrete levels that satisfy the condition - | ( ID SIGNED_INT ) -> ^(DiscreteDataType ID SIGNED_INT ) // the discrete level indicated by the INT - ; -DiscreteDataType : '&DiscreteDataType'; - -// a continous data type (expression or methylation) that satisfies the inequality -continuousDataTypeInequality - : - ( ID COMPARISON_OP floatOrInt ) -> - ^(ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) - ; - -floatOrInt - : SIGNED_FLOAT | SIGNED_INT ; - -// dummy tokens because ANTLR rewrite rules cannot use constants as node names! Argh! -ContinuousDataTypeInequality : '&ContinuousDataTypeInequality'; - -COMPARISON_OP - : ( '<=' | '<' | '>' | '>=' | '=') - ; - -ID : ('a'..'z'|'A'..'Z'|'0'..'9'|'_'|'*') ('a'..'z'|'A'..'Z'|'0'..'9'|'_'|'-'|'@'|'.'|'*'|'/')* - ; - -SIGNED_FLOAT - : ('-')? ( INT+ '.' INT* - | '.' INT+ ) - ; - -SIGNED_INT : ('-')? INT+ ; - -fragment INT : ('0' .. '9') ; - -WS : ( ' ' - | '\t' - | '\r' - | '\n' - ) {$channel=HIDDEN;} - ; - -STRING - : '"' ( ESC_SEQ | ~('\\'|'"') )* '"' - ; - -fragment -ESC_SEQ - : '\\' ('b'|'t'|'n'|'f'|'r'|'\"'|'\''|'\\') - | UNICODE_ESC - | OCTAL_ESC - ; - -fragment -OCTAL_ESC - : '\\' ('0'..'3') ('0'..'7') ('0'..'7') - | '\\' ('0'..'7') ('0'..'7') - | '\\' ('0'..'7') - ; - -fragment -UNICODE_ESC - : '\\' 'u' HEX_DIGIT HEX_DIGIT HEX_DIGIT HEX_DIGIT - ; - -fragment -HEX_DIGIT : ('0'..'9'|'a'..'f'|'A'..'F') ; diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTLexer.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTLexer.java deleted file mode 100644 index a2af91658f9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTLexer.java +++ /dev/null @@ -1,1279 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - - -// $ANTLR 3.2 Sep 23, 2009 12:02:23 ./completeOncoPrintSpecAST.g 2012-06-01 11:59:27 - - package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - - -import org.antlr.runtime.*; -import java.util.Stack; -import java.util.List; -import java.util.ArrayList; - -public class completeOncoPrintSpecASTLexer extends Lexer { - public static final int T__25=25; - public static final int T__24=24; - public static final int T__23=23; - public static final int T__22=22; - public static final int UserGeneList=5; - public static final int T__21=21; - public static final int COMPARISON_OP=10; - public static final int UNICODE_ESC=18; - public static final int OCTAL_ESC=19; - public static final int HEX_DIGIT=20; - public static final int INT=15; - public static final int ID=6; - public static final int EOF=-1; - public static final int DiscreteDataType=12; - public static final int ContinuousDataTypeInequality=14; - public static final int SIGNED_INT=11; - public static final int WS=16; - public static final int ESC_SEQ=17; - public static final int DataTypeOrLevel=9; - public static final int DefaultDataTypeSpec=8; - public static final int IndividualGene=7; - public static final int SIGNED_FLOAT=13; - public static final int STRING=4; - - // delegates - // delegators - - public completeOncoPrintSpecASTLexer() {;} - public completeOncoPrintSpecASTLexer(CharStream input) { - this(input, new RecognizerSharedState()); - } - public completeOncoPrintSpecASTLexer(CharStream input, RecognizerSharedState state) { - super(input,state); - - } - public String getGrammarFileName() { return "./completeOncoPrintSpecAST.g"; } - - // $ANTLR start "T__21" - public final void mT__21() throws RecognitionException { - try { - int _type = T__21; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:7:7: ( '{' ) - // ./completeOncoPrintSpecAST.g:7:9: '{' - { - match('{'); - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "T__21" - - // $ANTLR start "T__22" - public final void mT__22() throws RecognitionException { - try { - int _type = T__22; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:8:7: ( '}' ) - // ./completeOncoPrintSpecAST.g:8:9: '}' - { - match('}'); - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "T__22" - - // $ANTLR start "T__23" - public final void mT__23() throws RecognitionException { - try { - int _type = T__23; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:9:7: ( 'DATATYPES' ) - // ./completeOncoPrintSpecAST.g:9:9: 'DATATYPES' - { - match("DATATYPES"); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "T__23" - - // $ANTLR start "T__24" - public final void mT__24() throws RecognitionException { - try { - int _type = T__24; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:10:7: ( ':' ) - // ./completeOncoPrintSpecAST.g:10:9: ':' - { - match(':'); - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "T__24" - - // $ANTLR start "T__25" - public final void mT__25() throws RecognitionException { - try { - int _type = T__25; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:11:7: ( ';' ) - // ./completeOncoPrintSpecAST.g:11:9: ';' - { - match(';'); - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "T__25" - - // $ANTLR start "UserGeneList" - public final void mUserGeneList() throws RecognitionException { - try { - int _type = UserGeneList; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:138:14: ( '&userGeneList' ) - // ./completeOncoPrintSpecAST.g:138:17: '&userGeneList' - { - match("&userGeneList"); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "UserGeneList" - - // $ANTLR start "IndividualGene" - public final void mIndividualGene() throws RecognitionException { - try { - int _type = IndividualGene; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:155:2: ( '&individualGene' ) - // ./completeOncoPrintSpecAST.g:155:4: '&individualGene' - { - match("&individualGene"); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "IndividualGene" - - // $ANTLR start "DefaultDataTypeSpec" - public final void mDefaultDataTypeSpec() throws RecognitionException { - try { - int _type = DefaultDataTypeSpec; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:163:2: ( '&defaultDataTypeSpec' ) - // ./completeOncoPrintSpecAST.g:163:4: '&defaultDataTypeSpec' - { - match("&defaultDataTypeSpec"); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "DefaultDataTypeSpec" - - // $ANTLR start "DataTypeOrLevel" - public final void mDataTypeOrLevel() throws RecognitionException { - try { - int _type = DataTypeOrLevel; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:179:2: ( '&DataTypeOrLevel' ) - // ./completeOncoPrintSpecAST.g:179:4: '&DataTypeOrLevel' - { - match("&DataTypeOrLevel"); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "DataTypeOrLevel" - - // $ANTLR start "DiscreteDataType" - public final void mDiscreteDataType() throws RecognitionException { - try { - int _type = DiscreteDataType; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:187:19: ( '&DiscreteDataType' ) - // ./completeOncoPrintSpecAST.g:187:21: '&DiscreteDataType' - { - match("&DiscreteDataType"); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "DiscreteDataType" - - // $ANTLR start "ContinuousDataTypeInequality" - public final void mContinuousDataTypeInequality() throws RecognitionException { - try { - int _type = ContinuousDataTypeInequality; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:200:31: ( '&ContinuousDataTypeInequality' ) - // ./completeOncoPrintSpecAST.g:200:33: '&ContinuousDataTypeInequality' - { - match("&ContinuousDataTypeInequality"); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "ContinuousDataTypeInequality" - - // $ANTLR start "COMPARISON_OP" - public final void mCOMPARISON_OP() throws RecognitionException { - try { - int _type = COMPARISON_OP; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:203:2: ( ( '<=' | '<' | '>' | '>=' | '=' ) ) - // ./completeOncoPrintSpecAST.g:203:4: ( '<=' | '<' | '>' | '>=' | '=' ) - { - // ./completeOncoPrintSpecAST.g:203:4: ( '<=' | '<' | '>' | '>=' | '=' ) - int alt1=5; - switch ( input.LA(1) ) { - case '<': - { - int LA1_1 = input.LA(2); - - if ( (LA1_1=='=') ) { - alt1=1; - } - else { - alt1=2;} - } - break; - case '>': - { - int LA1_2 = input.LA(2); - - if ( (LA1_2=='=') ) { - alt1=4; - } - else { - alt1=3;} - } - break; - case '=': - { - alt1=5; - } - break; - default: - NoViableAltException nvae = - new NoViableAltException("", 1, 0, input); - - throw nvae; - } - - switch (alt1) { - case 1 : - // ./completeOncoPrintSpecAST.g:203:6: '<=' - { - match("<="); - - - } - break; - case 2 : - // ./completeOncoPrintSpecAST.g:203:13: '<' - { - match('<'); - - } - break; - case 3 : - // ./completeOncoPrintSpecAST.g:203:19: '>' - { - match('>'); - - } - break; - case 4 : - // ./completeOncoPrintSpecAST.g:203:25: '>=' - { - match(">="); - - - } - break; - case 5 : - // ./completeOncoPrintSpecAST.g:203:32: '=' - { - match('='); - - } - break; - - } - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "COMPARISON_OP" - - // $ANTLR start "ID" - public final void mID() throws RecognitionException { - try { - int _type = ID; - int _channel = DEFAULT_TOKEN_CHANNEL; - { - if ( input.LA(1)=='*'||(input.LA(1)>='0' && input.LA(1)<='9')||(input.LA(1)>='A' && input.LA(1)<='Z')||input.LA(1)=='_'||(input.LA(1)>='a' && input.LA(1)<='z') ) { - input.consume(); - - } - else { - MismatchedSetException mse = new MismatchedSetException(null,input); - recover(mse); - throw mse;} - - loop2: - do { - int alt2=2; - int LA2_0 = input.LA(1); - - if ( (LA2_0=='*'||(LA2_0>='-' && LA2_0<='9')||(LA2_0>='@' && LA2_0<='Z')||LA2_0=='_'||(LA2_0>='a' && LA2_0<='z')) ) { - alt2=1; - } - - - switch (alt2) { - case 1 : - // ./completeOncoPrintSpecAST.g: - { - if ( input.LA(1)=='*'||(input.LA(1)>='-' && input.LA(1)<='9')||(input.LA(1)>='@' && input.LA(1)<='Z')||input.LA(1)=='_'||(input.LA(1)>='a' && input.LA(1)<='z') ) { - input.consume(); - - } - else { - MismatchedSetException mse = new MismatchedSetException(null,input); - recover(mse); - throw mse;} - - - } - break; - - default : - break loop2; - } - } while (true); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "ID" - - // $ANTLR start "SIGNED_FLOAT" - public final void mSIGNED_FLOAT() throws RecognitionException { - try { - int _type = SIGNED_FLOAT; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:210:5: ( ( '-' )? ( ( INT )+ '.' ( INT )* | '.' ( INT )+ ) ) - // ./completeOncoPrintSpecAST.g:210:8: ( '-' )? ( ( INT )+ '.' ( INT )* | '.' ( INT )+ ) - { - // ./completeOncoPrintSpecAST.g:210:8: ( '-' )? - int alt3=2; - int LA3_0 = input.LA(1); - - if ( (LA3_0=='-') ) { - alt3=1; - } - switch (alt3) { - case 1 : - // ./completeOncoPrintSpecAST.g:210:9: '-' - { - match('-'); - - } - break; - - } - - // ./completeOncoPrintSpecAST.g:210:15: ( ( INT )+ '.' ( INT )* | '.' ( INT )+ ) - int alt7=2; - int LA7_0 = input.LA(1); - - if ( ((LA7_0>='0' && LA7_0<='9')) ) { - alt7=1; - } - else if ( (LA7_0=='.') ) { - alt7=2; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 7, 0, input); - - throw nvae; - } - switch (alt7) { - case 1 : - // ./completeOncoPrintSpecAST.g:210:17: ( INT )+ '.' ( INT )* - { - // ./completeOncoPrintSpecAST.g:210:17: ( INT )+ - int cnt4=0; - loop4: - do { - int alt4=2; - int LA4_0 = input.LA(1); - - if ( ((LA4_0>='0' && LA4_0<='9')) ) { - alt4=1; - } - - - switch (alt4) { - case 1 : - // ./completeOncoPrintSpecAST.g:210:17: INT - { - mINT(); - - } - break; - - default : - if ( cnt4 >= 1 ) break loop4; - EarlyExitException eee = - new EarlyExitException(4, input); - throw eee; - } - cnt4++; - } while (true); - - match('.'); - // ./completeOncoPrintSpecAST.g:210:26: ( INT )* - loop5: - do { - int alt5=2; - int LA5_0 = input.LA(1); - - if ( ((LA5_0>='0' && LA5_0<='9')) ) { - alt5=1; - } - - - switch (alt5) { - case 1 : - // ./completeOncoPrintSpecAST.g:210:26: INT - { - mINT(); - - } - break; - - default : - break loop5; - } - } while (true); - - - } - break; - case 2 : - // ./completeOncoPrintSpecAST.g:211:8: '.' ( INT )+ - { - match('.'); - // ./completeOncoPrintSpecAST.g:211:12: ( INT )+ - int cnt6=0; - loop6: - do { - int alt6=2; - int LA6_0 = input.LA(1); - - if ( ((LA6_0>='0' && LA6_0<='9')) ) { - alt6=1; - } - - - switch (alt6) { - case 1 : - // ./completeOncoPrintSpecAST.g:211:12: INT - { - mINT(); - - } - break; - - default : - if ( cnt6 >= 1 ) break loop6; - EarlyExitException eee = - new EarlyExitException(6, input); - throw eee; - } - cnt6++; - } while (true); - - - } - break; - - } - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "SIGNED_FLOAT" - - // $ANTLR start "SIGNED_INT" - public final void mSIGNED_INT() throws RecognitionException { - try { - int _type = SIGNED_INT; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:214:12: ( ( '-' )? ( INT )+ ) - // ./completeOncoPrintSpecAST.g:214:14: ( '-' )? ( INT )+ - { - // ./completeOncoPrintSpecAST.g:214:14: ( '-' )? - int alt8=2; - int LA8_0 = input.LA(1); - - if ( (LA8_0=='-') ) { - alt8=1; - } - switch (alt8) { - case 1 : - // ./completeOncoPrintSpecAST.g:214:15: '-' - { - match('-'); - - } - break; - - } - - // ./completeOncoPrintSpecAST.g:214:21: ( INT )+ - int cnt9=0; - loop9: - do { - int alt9=2; - int LA9_0 = input.LA(1); - - if ( ((LA9_0>='0' && LA9_0<='9')) ) { - alt9=1; - } - - - switch (alt9) { - case 1 : - // ./completeOncoPrintSpecAST.g:214:21: INT - { - mINT(); - - } - break; - - default : - if ( cnt9 >= 1 ) break loop9; - EarlyExitException eee = - new EarlyExitException(9, input); - throw eee; - } - cnt9++; - } while (true); - - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "SIGNED_INT" - - // $ANTLR start "INT" - public final void mINT() throws RecognitionException { - try { - // ./completeOncoPrintSpecAST.g:216:14: ( ( '0' .. '9' ) ) - // ./completeOncoPrintSpecAST.g:216:16: ( '0' .. '9' ) - { - // ./completeOncoPrintSpecAST.g:216:16: ( '0' .. '9' ) - // ./completeOncoPrintSpecAST.g:216:17: '0' .. '9' - { - matchRange('0','9'); - - } - - - } - - } - finally { - } - } - // $ANTLR end "INT" - - // $ANTLR start "WS" - public final void mWS() throws RecognitionException { - try { - int _type = WS; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:218:4: ( ( ' ' | '\\t' | '\\r' | '\\n' ) ) - // ./completeOncoPrintSpecAST.g:218:8: ( ' ' | '\\t' | '\\r' | '\\n' ) - { - if ( (input.LA(1)>='\t' && input.LA(1)<='\n')||input.LA(1)=='\r'||input.LA(1)==' ' ) { - input.consume(); - - } - else { - MismatchedSetException mse = new MismatchedSetException(null,input); - recover(mse); - throw mse;} - - _channel=HIDDEN; - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "WS" - - // $ANTLR start "STRING" - public final void mSTRING() throws RecognitionException { - try { - int _type = STRING; - int _channel = DEFAULT_TOKEN_CHANNEL; - // ./completeOncoPrintSpecAST.g:226:5: ( '\"' ( ESC_SEQ | ~ ( '\\\\' | '\"' ) )* '\"' ) - // ./completeOncoPrintSpecAST.g:226:8: '\"' ( ESC_SEQ | ~ ( '\\\\' | '\"' ) )* '\"' - { - match('\"'); - // ./completeOncoPrintSpecAST.g:226:12: ( ESC_SEQ | ~ ( '\\\\' | '\"' ) )* - loop10: - do { - int alt10=3; - int LA10_0 = input.LA(1); - - if ( (LA10_0=='\\') ) { - alt10=1; - } - else if ( ((LA10_0>='\u0000' && LA10_0<='!')||(LA10_0>='#' && LA10_0<='[')||(LA10_0>=']' && LA10_0<='\uFFFF')) ) { - alt10=2; - } - - - switch (alt10) { - case 1 : - // ./completeOncoPrintSpecAST.g:226:14: ESC_SEQ - { - mESC_SEQ(); - - } - break; - case 2 : - // ./completeOncoPrintSpecAST.g:226:24: ~ ( '\\\\' | '\"' ) - { - if ( (input.LA(1)>='\u0000' && input.LA(1)<='!')||(input.LA(1)>='#' && input.LA(1)<='[')||(input.LA(1)>=']' && input.LA(1)<='\uFFFF') ) { - input.consume(); - - } - else { - MismatchedSetException mse = new MismatchedSetException(null,input); - recover(mse); - throw mse;} - - - } - break; - - default : - break loop10; - } - } while (true); - - match('\"'); - - } - - state.type = _type; - state.channel = _channel; - } - finally { - } - } - // $ANTLR end "STRING" - - // $ANTLR start "ESC_SEQ" - public final void mESC_SEQ() throws RecognitionException { - try { - // ./completeOncoPrintSpecAST.g:231:5: ( '\\\\' ( 'b' | 't' | 'n' | 'f' | 'r' | '\\\"' | '\\'' | '\\\\' ) | UNICODE_ESC | OCTAL_ESC ) - int alt11=3; - int LA11_0 = input.LA(1); - - if ( (LA11_0=='\\') ) { - switch ( input.LA(2) ) { - case '\"': - case '\'': - case '\\': - case 'b': - case 'f': - case 'n': - case 'r': - case 't': - { - alt11=1; - } - break; - case 'u': - { - alt11=2; - } - break; - case '0': - case '1': - case '2': - case '3': - case '4': - case '5': - case '6': - case '7': - { - alt11=3; - } - break; - default: - NoViableAltException nvae = - new NoViableAltException("", 11, 1, input); - - throw nvae; - } - - } - else { - NoViableAltException nvae = - new NoViableAltException("", 11, 0, input); - - throw nvae; - } - switch (alt11) { - case 1 : - // ./completeOncoPrintSpecAST.g:231:9: '\\\\' ( 'b' | 't' | 'n' | 'f' | 'r' | '\\\"' | '\\'' | '\\\\' ) - { - match('\\'); - if ( input.LA(1)=='\"'||input.LA(1)=='\''||input.LA(1)=='\\'||input.LA(1)=='b'||input.LA(1)=='f'||input.LA(1)=='n'||input.LA(1)=='r'||input.LA(1)=='t' ) { - input.consume(); - - } - else { - MismatchedSetException mse = new MismatchedSetException(null,input); - recover(mse); - throw mse;} - - - } - break; - case 2 : - // ./completeOncoPrintSpecAST.g:232:9: UNICODE_ESC - { - mUNICODE_ESC(); - - } - break; - case 3 : - // ./completeOncoPrintSpecAST.g:233:9: OCTAL_ESC - { - mOCTAL_ESC(); - - } - break; - - } - } - finally { - } - } - // $ANTLR end "ESC_SEQ" - - // $ANTLR start "OCTAL_ESC" - public final void mOCTAL_ESC() throws RecognitionException { - try { - // ./completeOncoPrintSpecAST.g:238:5: ( '\\\\' ( '0' .. '3' ) ( '0' .. '7' ) ( '0' .. '7' ) | '\\\\' ( '0' .. '7' ) ( '0' .. '7' ) | '\\\\' ( '0' .. '7' ) ) - int alt12=3; - int LA12_0 = input.LA(1); - - if ( (LA12_0=='\\') ) { - int LA12_1 = input.LA(2); - - if ( ((LA12_1>='0' && LA12_1<='3')) ) { - int LA12_2 = input.LA(3); - - if ( ((LA12_2>='0' && LA12_2<='7')) ) { - int LA12_5 = input.LA(4); - - if ( ((LA12_5>='0' && LA12_5<='7')) ) { - alt12=1; - } - else { - alt12=2;} - } - else { - alt12=3;} - } - else if ( ((LA12_1>='4' && LA12_1<='7')) ) { - int LA12_3 = input.LA(3); - - if ( ((LA12_3>='0' && LA12_3<='7')) ) { - alt12=2; - } - else { - alt12=3;} - } - else { - NoViableAltException nvae = - new NoViableAltException("", 12, 1, input); - - throw nvae; - } - } - else { - NoViableAltException nvae = - new NoViableAltException("", 12, 0, input); - - throw nvae; - } - switch (alt12) { - case 1 : - // ./completeOncoPrintSpecAST.g:238:9: '\\\\' ( '0' .. '3' ) ( '0' .. '7' ) ( '0' .. '7' ) - { - match('\\'); - // ./completeOncoPrintSpecAST.g:238:14: ( '0' .. '3' ) - // ./completeOncoPrintSpecAST.g:238:15: '0' .. '3' - { - matchRange('0','3'); - - } - - // ./completeOncoPrintSpecAST.g:238:25: ( '0' .. '7' ) - // ./completeOncoPrintSpecAST.g:238:26: '0' .. '7' - { - matchRange('0','7'); - - } - - // ./completeOncoPrintSpecAST.g:238:36: ( '0' .. '7' ) - // ./completeOncoPrintSpecAST.g:238:37: '0' .. '7' - { - matchRange('0','7'); - - } - - - } - break; - case 2 : - // ./completeOncoPrintSpecAST.g:239:9: '\\\\' ( '0' .. '7' ) ( '0' .. '7' ) - { - match('\\'); - // ./completeOncoPrintSpecAST.g:239:14: ( '0' .. '7' ) - // ./completeOncoPrintSpecAST.g:239:15: '0' .. '7' - { - matchRange('0','7'); - - } - - // ./completeOncoPrintSpecAST.g:239:25: ( '0' .. '7' ) - // ./completeOncoPrintSpecAST.g:239:26: '0' .. '7' - { - matchRange('0','7'); - - } - - - } - break; - case 3 : - // ./completeOncoPrintSpecAST.g:240:9: '\\\\' ( '0' .. '7' ) - { - match('\\'); - // ./completeOncoPrintSpecAST.g:240:14: ( '0' .. '7' ) - // ./completeOncoPrintSpecAST.g:240:15: '0' .. '7' - { - matchRange('0','7'); - - } - - - } - break; - - } - } - finally { - } - } - // $ANTLR end "OCTAL_ESC" - - // $ANTLR start "UNICODE_ESC" - public final void mUNICODE_ESC() throws RecognitionException { - try { - // ./completeOncoPrintSpecAST.g:245:5: ( '\\\\' 'u' HEX_DIGIT HEX_DIGIT HEX_DIGIT HEX_DIGIT ) - // ./completeOncoPrintSpecAST.g:245:9: '\\\\' 'u' HEX_DIGIT HEX_DIGIT HEX_DIGIT HEX_DIGIT - { - match('\\'); - match('u'); - mHEX_DIGIT(); - mHEX_DIGIT(); - mHEX_DIGIT(); - mHEX_DIGIT(); - - } - - } - finally { - } - } - // $ANTLR end "UNICODE_ESC" - - // $ANTLR start "HEX_DIGIT" - public final void mHEX_DIGIT() throws RecognitionException { - try { - // ./completeOncoPrintSpecAST.g:249:11: ( ( '0' .. '9' | 'a' .. 'f' | 'A' .. 'F' ) ) - // ./completeOncoPrintSpecAST.g:249:13: ( '0' .. '9' | 'a' .. 'f' | 'A' .. 'F' ) - { - if ( (input.LA(1)>='0' && input.LA(1)<='9')||(input.LA(1)>='A' && input.LA(1)<='F')||(input.LA(1)>='a' && input.LA(1)<='f') ) { - input.consume(); - - } - else { - MismatchedSetException mse = new MismatchedSetException(null,input); - recover(mse); - throw mse;} - - - } - - } - finally { - } - } - // $ANTLR end "HEX_DIGIT" - - public void mTokens() throws RecognitionException { - // ./completeOncoPrintSpecAST.g:1:8: ( T__21 | T__22 | T__23 | T__24 | T__25 | UserGeneList | IndividualGene | DefaultDataTypeSpec | DataTypeOrLevel | DiscreteDataType | ContinuousDataTypeInequality | COMPARISON_OP | ID | SIGNED_FLOAT | SIGNED_INT | WS | STRING ) - int alt13=17; - alt13 = dfa13.predict(input); - switch (alt13) { - case 1 : - // ./completeOncoPrintSpecAST.g:1:10: T__21 - { - mT__21(); - - } - break; - case 2 : - // ./completeOncoPrintSpecAST.g:1:16: T__22 - { - mT__22(); - - } - break; - case 3 : - // ./completeOncoPrintSpecAST.g:1:22: T__23 - { - mT__23(); - - } - break; - case 4 : - // ./completeOncoPrintSpecAST.g:1:28: T__24 - { - mT__24(); - - } - break; - case 5 : - // ./completeOncoPrintSpecAST.g:1:34: T__25 - { - mT__25(); - - } - break; - case 6 : - // ./completeOncoPrintSpecAST.g:1:40: UserGeneList - { - mUserGeneList(); - - } - break; - case 7 : - // ./completeOncoPrintSpecAST.g:1:53: IndividualGene - { - mIndividualGene(); - - } - break; - case 8 : - // ./completeOncoPrintSpecAST.g:1:68: DefaultDataTypeSpec - { - mDefaultDataTypeSpec(); - - } - break; - case 9 : - // ./completeOncoPrintSpecAST.g:1:88: DataTypeOrLevel - { - mDataTypeOrLevel(); - - } - break; - case 10 : - // ./completeOncoPrintSpecAST.g:1:104: DiscreteDataType - { - mDiscreteDataType(); - - } - break; - case 11 : - // ./completeOncoPrintSpecAST.g:1:121: ContinuousDataTypeInequality - { - mContinuousDataTypeInequality(); - - } - break; - case 12 : - // ./completeOncoPrintSpecAST.g:1:150: COMPARISON_OP - { - mCOMPARISON_OP(); - - } - break; - case 13 : - // ./completeOncoPrintSpecAST.g:1:164: ID - { - mID(); - - } - break; - case 14 : - // ./completeOncoPrintSpecAST.g:1:167: SIGNED_FLOAT - { - mSIGNED_FLOAT(); - - } - break; - case 15 : - // ./completeOncoPrintSpecAST.g:1:180: SIGNED_INT - { - mSIGNED_INT(); - - } - break; - case 16 : - // ./completeOncoPrintSpecAST.g:1:191: WS - { - mWS(); - - } - break; - case 17 : - // ./completeOncoPrintSpecAST.g:1:194: STRING - { - mSTRING(); - - } - break; - - } - - } - - - protected DFA13 dfa13 = new DFA13(this); - static final String DFA13_eotS = - "\3\uffff\1\10\6\uffff\1\24\3\uffff\1\10\6\uffff\1\10\2\uffff\5\10"+ - "\1\36\1\uffff"; - static final String DFA13_eofS = - "\37\uffff"; - static final String DFA13_minS = - "\1\11\2\uffff\1\101\2\uffff\1\103\2\uffff\2\56\3\uffff\1\124\3\uffff"+ - "\1\141\2\uffff\1\101\2\uffff\1\124\1\131\1\120\1\105\1\123\1\52"+ - "\1\uffff"; - static final String DFA13_maxS = - "\1\175\2\uffff\1\101\2\uffff\1\165\2\uffff\2\71\3\uffff\1\124\3"+ - "\uffff\1\151\2\uffff\1\101\2\uffff\1\124\1\131\1\120\1\105\1\123"+ - "\1\172\1\uffff"; - static final String DFA13_acceptS = - "\1\uffff\1\1\1\2\1\uffff\1\4\1\5\1\uffff\1\14\1\15\2\uffff\1\16"+ - "\1\20\1\21\1\uffff\1\6\1\7\1\10\1\uffff\1\13\1\17\1\uffff\1\11\1"+ - "\12\6\uffff\1\3"; - static final String DFA13_specialS = - "\37\uffff}>"; - static final String[] DFA13_transitionS = { - "\2\14\2\uffff\1\14\22\uffff\1\14\1\uffff\1\15\3\uffff\1\6\3"+ - "\uffff\1\10\2\uffff\1\11\1\13\1\uffff\12\12\1\4\1\5\3\7\2\uffff"+ - "\3\10\1\3\26\10\4\uffff\1\10\1\uffff\32\10\1\1\1\uffff\1\2", - "", - "", - "\1\16", - "", - "", - "\1\23\1\22\37\uffff\1\21\4\uffff\1\20\13\uffff\1\17", - "", - "", - "\1\13\1\uffff\12\12", - "\1\13\1\uffff\12\12", - "", - "", - "", - "\1\25", - "", - "", - "", - "\1\26\7\uffff\1\27", - "", - "", - "\1\30", - "", - "", - "\1\31", - "\1\32", - "\1\33", - "\1\34", - "\1\35", - "\1\10\2\uffff\1\10\1\uffff\13\10\7\uffff\32\10\4\uffff\1\10"+ - "\1\uffff\32\10", - "" - }; - - static final short[] DFA13_eot = DFA.unpackEncodedString(DFA13_eotS); - static final short[] DFA13_eof = DFA.unpackEncodedString(DFA13_eofS); - static final char[] DFA13_min = DFA.unpackEncodedStringToUnsignedChars(DFA13_minS); - static final char[] DFA13_max = DFA.unpackEncodedStringToUnsignedChars(DFA13_maxS); - static final short[] DFA13_accept = DFA.unpackEncodedString(DFA13_acceptS); - static final short[] DFA13_special = DFA.unpackEncodedString(DFA13_specialS); - static final short[][] DFA13_transition; - - static { - int numStates = DFA13_transitionS.length; - DFA13_transition = new short[numStates][]; - for (int i=0; i. -*/ - - -// $ANTLR 3.2 Sep 23, 2009 12:02:23 ../completeOncoPrintSpecAST.g 2010-12-14 17:00:18 - - package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - import java.util.ArrayList; - import org.mskcc.cbio.portal.oncoPrintSpecLanguage.*; - import static java.lang.System.out; - import java.io.PrintStream; - - -import org.antlr.runtime.*; -import java.util.Stack; -import java.util.List; -import java.util.ArrayList; - - -import org.antlr.runtime.tree.*; - -public class completeOncoPrintSpecASTParser extends Parser { - public static final String[] tokenNames = new String[] { - "", "", "", "", "STRING", "UserGeneList", "ID", "IndividualGene", "DefaultDataTypeSpec", "DataTypeOrLevel", "COMPARISON_OP", "SIGNED_INT", "DiscreteDataType", "SIGNED_FLOAT", "ContinuousDataTypeInequality", "INT", "WS", "ESC_SEQ", "UNICODE_ESC", "OCTAL_ESC", "HEX_DIGIT", "'{'", "'}'", "'DATATYPES'", "':'", "';'" - }; - public static final int T__25=25; - public static final int T__24=24; - public static final int T__23=23; - public static final int T__22=22; - public static final int UserGeneList=5; - public static final int T__21=21; - public static final int COMPARISON_OP=10; - public static final int UNICODE_ESC=18; - public static final int OCTAL_ESC=19; - public static final int HEX_DIGIT=20; - public static final int INT=15; - public static final int ID=6; - public static final int EOF=-1; - public static final int DiscreteDataType=12; - public static final int ContinuousDataTypeInequality=14; - public static final int SIGNED_INT=11; - public static final int ESC_SEQ=17; - public static final int WS=16; - public static final int IndividualGene=7; - public static final int DefaultDataTypeSpec=8; - public static final int DataTypeOrLevel=9; - public static final int SIGNED_FLOAT=13; - public static final int STRING=4; - - // delegates - // delegators - - - public completeOncoPrintSpecASTParser(TokenStream input) { - this(input, new RecognizerSharedState()); - } - public completeOncoPrintSpecASTParser(TokenStream input, RecognizerSharedState state) { - super(input, state); - - } - - protected TreeAdaptor adaptor = new CommonTreeAdaptor(); - - public void setTreeAdaptor(TreeAdaptor adaptor) { - this.adaptor = adaptor; - } - public TreeAdaptor getTreeAdaptor() { - return adaptor; - } - - public String[] getTokenNames() { return completeOncoPrintSpecASTParser.tokenNames; } - public String getGrammarFileName() { return "../completeOncoPrintSpecAST.g"; } - - - /* - DAMN, won't work; this returns only an AST, and we don't want to throw exceptions because then the parse won't complete - - Error handling strategy: We serve two purposes, - 1) when calling the root production, oncoPrintSpecification, return a list of all errors, each a String; - similarly for the tree grammar; thus if syntax error(s) occur, the driver program gets all of them, and doesn't call the - tree parser; and if semantics error(s) occur, the driver will get all of them - 2) when calling any other production, as for unit testing, throw an RecognitionException - Implementation: - a) in reportError, determine whether we're in case 1 or 2, and collect or throw accordingly - b) in the root production if errors have been thrown, rethrow the list - */ - - // get a list to hold errors - // TODO: HIGH: UNIT TEST in OncoSpec - ArrayList errorMessages = new ArrayList(); // APG: TMP FIX: Utilities.getErrorMessages(); - - // override to make comprehensible errors for users - public void reportError(RecognitionException e){ - // if we've already reported an error and have not matched a token - // yet successfully, don't report any errors. - if ( state.errorRecovery ) { - //System.err.print("[SPURIOUS] "); - return; - } - state.syntaxErrors++; // don't count spurious - state.errorRecovery = true; - displayRecognitionError(this.getTokenNames(), e); - } - - public void displayRecognitionError(String[] tokenNames, RecognitionException e) { - // String hdr = getErrorHeader(e); - int normalPos = e.charPositionInLine + 1; - String hdr = "Syntax error at char " + normalPos + " of line "+e.line+": "; - String msg = getErrorMessage(e, tokenNames); - // TODO: change this to print to a tmp file - // get ASTparser to write errors to a PrintStream, connected to a file - // System.err.println( hdr + msg); - errorMessages.add( hdr + msg ); - } - - public String getErrorMessage(RecognitionException e, String[] tokenNames) { - String msg = e.getMessage(); - // emitErrorMessage( "APG received " + e.getClass().getName() + " with token " + e.token.getText() ); - - if (e instanceof UnwantedTokenException) { - UnwantedTokenException ute = (UnwantedTokenException) e; - String tokenName = ""; - if (ute.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[ute.expecting]; - } - msg = "extraneous input " + getTokenErrorDisplay(ute.getUnexpectedToken()) + " expecting " - + tokenName; - } else if (e instanceof MissingTokenException) { - MissingTokenException mte = (MissingTokenException) e; - String tokenName = ""; - if (mte.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[mte.expecting]; - } - msg = "missing " + tokenName + " at " + getTokenErrorDisplay(e.token); - } else if (e instanceof MismatchedTokenException) { - MismatchedTokenException mte = (MismatchedTokenException) e; - String tokenName = ""; - if (mte.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[mte.expecting]; - } - msg = "mismatched input " + getTokenErrorDisplay(e.token) + " expecting " + tokenName; - } else if (e instanceof MismatchedTreeNodeException) { - MismatchedTreeNodeException mtne = (MismatchedTreeNodeException) e; - String tokenName = ""; - if (mtne.expecting == Token.EOF) { - tokenName = "EOF"; - } else { - tokenName = tokenNames[mtne.expecting]; - } - msg = "mismatched tree node: " + mtne.node + " expecting " + tokenName; - } else if (e instanceof NoViableAltException) { - // NoViableAltException nvae = (NoViableAltException)e; - // for development, can add - // "decision=<<"+nvae.grammarDecisionDescription+">>" - // and "(decision="+nvae.decisionNumber+") and - // "state "+nvae.stateNumber - msg = "Syntax error at " + getTokenErrorDisplay(e.token); - } else if (e instanceof EarlyExitException) { - // EarlyExitException eee = (EarlyExitException)e; - // for development, can add "(decision="+eee.decisionNumber+")" - // TODO: better error message - msg = "found empty list at " // "required (...)+ loop did not match anything at input " - + getTokenErrorDisplay(e.token); - } else if (e instanceof MismatchedSetException) { - MismatchedSetException mse = (MismatchedSetException) e; - msg = "mismatched input " + getTokenErrorDisplay(e.token) + "."; // + " expecting set " + mse.expecting; - } else if (e instanceof MismatchedNotSetException) { - MismatchedNotSetException mse = (MismatchedNotSetException) e; - msg = "mismatched input " + getTokenErrorDisplay(e.token) + "."; // + " expecting set " + mse.expecting; - } else if (e instanceof FailedPredicateException) { - FailedPredicateException fpe = (FailedPredicateException) e; - // msg = "rule " + fpe.ruleName + " failed predicate: {" + fpe.predicateText + "}?"; - // msg = "token '" + e.token.getText() + "' is not a valid '" + lookupDataTypeName( fpe.ruleName ) +"'."; - } - return msg; - } - - - public static class oncoPrintSpecification_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "oncoPrintSpecification" - // ../completeOncoPrintSpecAST.g:126:1: oncoPrintSpecification : ( userGeneList )+ -> ( userGeneList )+ ; - public final completeOncoPrintSpecASTParser.oncoPrintSpecification_return oncoPrintSpecification() throws RecognitionException { - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - completeOncoPrintSpecASTParser.oncoPrintSpecification_return retval = new completeOncoPrintSpecASTParser.oncoPrintSpecification_return(); - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - retval.start = input.LT(1); - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - - Object root_0 = null; - - completeOncoPrintSpecASTParser.userGeneList_return userGeneList1 = null; - - // for debugging System.err.println( "at " + Thread.currentThread().getStackTrace()[1].getFileName() + ":" + Thread.currentThread().getStackTrace()[1].getLineNumber()); - - RewriteRuleSubtreeStream stream_userGeneList=new RewriteRuleSubtreeStream(adaptor,"rule userGeneList"); - try { - // ../completeOncoPrintSpecAST.g:127:2: ( ( userGeneList )+ -> ( userGeneList )+ ) - // ../completeOncoPrintSpecAST.g:128:2: ( userGeneList )+ - { - // ../completeOncoPrintSpecAST.g:128:2: ( userGeneList )+ - int cnt1=0; - loop1: - do { - int alt1=2; - int LA1_0 = input.LA(1); - - if ( (LA1_0==STRING||LA1_0==ID||LA1_0==21||LA1_0==23) ) { - alt1=1; - } - - - switch (alt1) { - case 1 : - // ../completeOncoPrintSpecAST.g:128:4: userGeneList - { - pushFollow(FOLLOW_userGeneList_in_oncoPrintSpecification45); - userGeneList1=userGeneList(); - - state._fsp--; - - stream_userGeneList.add(userGeneList1.getTree()); - - } - break; - - default : - if ( cnt1 >= 1 ) break loop1; - EarlyExitException eee = - new EarlyExitException(1, input); - throw eee; - } - cnt1++; - } while (true); - - - - // AST REWRITE - // elements: userGeneList - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 128:20: -> ( userGeneList )+ - { - if ( !(stream_userGeneList.hasNext()) ) { - throw new RewriteEarlyExitException(); - } - while ( stream_userGeneList.hasNext() ) { - adaptor.addChild(root_0, stream_userGeneList.nextTree()); - - } - stream_userGeneList.reset(); - - } - - retval.tree = root_0; - } - - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "oncoPrintSpecification" - - public static class userGeneList_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "userGeneList" - // ../completeOncoPrintSpecAST.g:131:1: userGeneList : ( geneList | ( '{' geneList '}' | STRING '{' geneList '}' ) -> ^( UserGeneList geneList ( STRING )? ) ); - public final completeOncoPrintSpecASTParser.userGeneList_return userGeneList() throws RecognitionException { - completeOncoPrintSpecASTParser.userGeneList_return retval = new completeOncoPrintSpecASTParser.userGeneList_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token char_literal3=null; - Token char_literal5=null; - Token STRING6=null; - Token char_literal7=null; - Token char_literal9=null; - completeOncoPrintSpecASTParser.geneList_return geneList2 = null; - - completeOncoPrintSpecASTParser.geneList_return geneList4 = null; - - completeOncoPrintSpecASTParser.geneList_return geneList8 = null; - - - Object char_literal3_tree=null; - Object char_literal5_tree=null; - Object STRING6_tree=null; - Object char_literal7_tree=null; - Object char_literal9_tree=null; - RewriteRuleTokenStream stream_21=new RewriteRuleTokenStream(adaptor,"token 21"); - RewriteRuleTokenStream stream_22=new RewriteRuleTokenStream(adaptor,"token 22"); - RewriteRuleTokenStream stream_STRING=new RewriteRuleTokenStream(adaptor,"token STRING"); - RewriteRuleSubtreeStream stream_geneList=new RewriteRuleSubtreeStream(adaptor,"rule geneList"); - try { - // ../completeOncoPrintSpecAST.g:132:2: ( geneList | ( '{' geneList '}' | STRING '{' geneList '}' ) -> ^( UserGeneList geneList ( STRING )? ) ) - int alt3=2; - int LA3_0 = input.LA(1); - - if ( (LA3_0==ID||LA3_0==23) ) { - alt3=1; - } - else if ( (LA3_0==STRING||LA3_0==21) ) { - alt3=2; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 3, 0, input); - - throw nvae; - } - switch (alt3) { - case 1 : - // ../completeOncoPrintSpecAST.g:133:2: geneList - { - root_0 = (Object)adaptor.nil(); - - pushFollow(FOLLOW_geneList_in_userGeneList65); - geneList2=geneList(); - - state._fsp--; - - adaptor.addChild(root_0, geneList2.getTree()); - - } - break; - case 2 : - // ../completeOncoPrintSpecAST.g:135:2: ( '{' geneList '}' | STRING '{' geneList '}' ) - { - // ../completeOncoPrintSpecAST.g:135:2: ( '{' geneList '}' | STRING '{' geneList '}' ) - int alt2=2; - int LA2_0 = input.LA(1); - - if ( (LA2_0==21) ) { - alt2=1; - } - else if ( (LA2_0==STRING) ) { - alt2=2; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 2, 0, input); - - throw nvae; - } - switch (alt2) { - case 1 : - // ../completeOncoPrintSpecAST.g:135:4: '{' geneList '}' - { - char_literal3=(Token)match(input,21,FOLLOW_21_in_userGeneList75); - stream_21.add(char_literal3); - - pushFollow(FOLLOW_geneList_in_userGeneList77); - geneList4=geneList(); - - state._fsp--; - - stream_geneList.add(geneList4.getTree()); - char_literal5=(Token)match(input,22,FOLLOW_22_in_userGeneList79); - stream_22.add(char_literal5); - - - } - break; - case 2 : - // ../completeOncoPrintSpecAST.g:136:4: STRING '{' geneList '}' - { - STRING6=(Token)match(input,STRING,FOLLOW_STRING_in_userGeneList85); - stream_STRING.add(STRING6); - - char_literal7=(Token)match(input,21,FOLLOW_21_in_userGeneList87); - stream_21.add(char_literal7); - - pushFollow(FOLLOW_geneList_in_userGeneList89); - geneList8=geneList(); - - state._fsp--; - - stream_geneList.add(geneList8.getTree()); - char_literal9=(Token)match(input,22,FOLLOW_22_in_userGeneList91); - stream_22.add(char_literal9); - - - } - break; - - } - - - - // AST REWRITE - // elements: STRING, geneList - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 136:30: -> ^( UserGeneList geneList ( STRING )? ) - { - // ../completeOncoPrintSpecAST.g:136:33: ^( UserGeneList geneList ( STRING )? ) - { - Object root_1 = (Object)adaptor.nil(); - root_1 = (Object)adaptor.becomeRoot((Object)adaptor.create(UserGeneList, "UserGeneList"), root_1); - - adaptor.addChild(root_1, stream_geneList.nextTree()); - // ../completeOncoPrintSpecAST.g:136:57: ( STRING )? - if ( stream_STRING.hasNext() ) { - adaptor.addChild(root_1, stream_STRING.nextNode()); - - } - stream_STRING.reset(); - - adaptor.addChild(root_0, root_1); - } - - } - - retval.tree = root_0; - } - break; - - } - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "userGeneList" - - public static class geneList_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "geneList" - // ../completeOncoPrintSpecAST.g:141:1: geneList : ( individualGene | defaultDataTypeSpec )+ ; - public final completeOncoPrintSpecASTParser.geneList_return geneList() throws RecognitionException { - completeOncoPrintSpecASTParser.geneList_return retval = new completeOncoPrintSpecASTParser.geneList_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - completeOncoPrintSpecASTParser.individualGene_return individualGene10 = null; - - completeOncoPrintSpecASTParser.defaultDataTypeSpec_return defaultDataTypeSpec11 = null; - - - - try { - // ../completeOncoPrintSpecAST.g:142:2: ( ( individualGene | defaultDataTypeSpec )+ ) - // ../completeOncoPrintSpecAST.g:146:2: ( individualGene | defaultDataTypeSpec )+ - { - root_0 = (Object)adaptor.nil(); - - // ../completeOncoPrintSpecAST.g:146:2: ( individualGene | defaultDataTypeSpec )+ - int cnt4=0; - loop4: - do { - int alt4=3; - int LA4_0 = input.LA(1); - - if ( (LA4_0==ID) ) { - alt4=1; - } - else if ( (LA4_0==23) ) { - alt4=2; - } - - - switch (alt4) { - case 1 : - // ../completeOncoPrintSpecAST.g:146:4: individualGene - { - pushFollow(FOLLOW_individualGene_in_geneList135); - individualGene10=individualGene(); - - state._fsp--; - - adaptor.addChild(root_0, individualGene10.getTree()); - - } - break; - case 2 : - // ../completeOncoPrintSpecAST.g:146:21: defaultDataTypeSpec - { - pushFollow(FOLLOW_defaultDataTypeSpec_in_geneList139); - defaultDataTypeSpec11=defaultDataTypeSpec(); - - state._fsp--; - - adaptor.addChild(root_0, defaultDataTypeSpec11.getTree()); - - } - break; - - default : - if ( cnt4 >= 1 ) break loop4; - EarlyExitException eee = - new EarlyExitException(4, input); - throw eee; - } - cnt4++; - } while (true); - - - } - - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "geneList" - - public static class individualGene_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "individualGene" - // ../completeOncoPrintSpecAST.g:150:1: individualGene : ID ( fullDataTypeSpec )? -> ^( IndividualGene ID ( fullDataTypeSpec )? ) ; - public final completeOncoPrintSpecASTParser.individualGene_return individualGene() throws RecognitionException { - completeOncoPrintSpecASTParser.individualGene_return retval = new completeOncoPrintSpecASTParser.individualGene_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token ID12=null; - completeOncoPrintSpecASTParser.fullDataTypeSpec_return fullDataTypeSpec13 = null; - - - Object ID12_tree=null; - RewriteRuleTokenStream stream_ID=new RewriteRuleTokenStream(adaptor,"token ID"); - RewriteRuleSubtreeStream stream_fullDataTypeSpec=new RewriteRuleSubtreeStream(adaptor,"rule fullDataTypeSpec"); - try { - // ../completeOncoPrintSpecAST.g:151:2: ( ID ( fullDataTypeSpec )? -> ^( IndividualGene ID ( fullDataTypeSpec )? ) ) - // ../completeOncoPrintSpecAST.g:152:2: ID ( fullDataTypeSpec )? - { - ID12=(Token)match(input,ID,FOLLOW_ID_in_individualGene155); - stream_ID.add(ID12); - - // ../completeOncoPrintSpecAST.g:152:5: ( fullDataTypeSpec )? - int alt5=2; - int LA5_0 = input.LA(1); - - if ( (LA5_0==24) ) { - alt5=1; - } - switch (alt5) { - case 1 : - // ../completeOncoPrintSpecAST.g:152:5: fullDataTypeSpec - { - pushFollow(FOLLOW_fullDataTypeSpec_in_individualGene157); - fullDataTypeSpec13=fullDataTypeSpec(); - - state._fsp--; - - stream_fullDataTypeSpec.add(fullDataTypeSpec13.getTree()); - - } - break; - - } - - - - // AST REWRITE - // elements: ID, fullDataTypeSpec - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 152:23: -> ^( IndividualGene ID ( fullDataTypeSpec )? ) - { - // ../completeOncoPrintSpecAST.g:152:26: ^( IndividualGene ID ( fullDataTypeSpec )? ) - { - Object root_1 = (Object)adaptor.nil(); - root_1 = (Object)adaptor.becomeRoot((Object)adaptor.create(IndividualGene, "IndividualGene"), root_1); - - adaptor.addChild(root_1, stream_ID.nextNode()); - // ../completeOncoPrintSpecAST.g:152:46: ( fullDataTypeSpec )? - if ( stream_fullDataTypeSpec.hasNext() ) { - adaptor.addChild(root_1, stream_fullDataTypeSpec.nextTree()); - - } - stream_fullDataTypeSpec.reset(); - - adaptor.addChild(root_0, root_1); - } - - } - - retval.tree = root_0; - } - - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "individualGene" - - public static class defaultDataTypeSpec_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "defaultDataTypeSpec" - // ../completeOncoPrintSpecAST.g:158:1: defaultDataTypeSpec : 'DATATYPES' fullDataTypeSpec -> ^( DefaultDataTypeSpec fullDataTypeSpec ) ; - public final completeOncoPrintSpecASTParser.defaultDataTypeSpec_return defaultDataTypeSpec() throws RecognitionException { - completeOncoPrintSpecASTParser.defaultDataTypeSpec_return retval = new completeOncoPrintSpecASTParser.defaultDataTypeSpec_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token string_literal14=null; - completeOncoPrintSpecASTParser.fullDataTypeSpec_return fullDataTypeSpec15 = null; - - - Object string_literal14_tree=null; - RewriteRuleTokenStream stream_23=new RewriteRuleTokenStream(adaptor,"token 23"); - RewriteRuleSubtreeStream stream_fullDataTypeSpec=new RewriteRuleSubtreeStream(adaptor,"rule fullDataTypeSpec"); - try { - // ../completeOncoPrintSpecAST.g:159:2: ( 'DATATYPES' fullDataTypeSpec -> ^( DefaultDataTypeSpec fullDataTypeSpec ) ) - // ../completeOncoPrintSpecAST.g:159:4: 'DATATYPES' fullDataTypeSpec - { - string_literal14=(Token)match(input,23,FOLLOW_23_in_defaultDataTypeSpec190); - stream_23.add(string_literal14); - - pushFollow(FOLLOW_fullDataTypeSpec_in_defaultDataTypeSpec194); - fullDataTypeSpec15=fullDataTypeSpec(); - - state._fsp--; - - stream_fullDataTypeSpec.add(fullDataTypeSpec15.getTree()); - - - // AST REWRITE - // elements: fullDataTypeSpec - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 160:19: -> ^( DefaultDataTypeSpec fullDataTypeSpec ) - { - // ../completeOncoPrintSpecAST.g:160:22: ^( DefaultDataTypeSpec fullDataTypeSpec ) - { - Object root_1 = (Object)adaptor.nil(); - root_1 = (Object)adaptor.becomeRoot((Object)adaptor.create(DefaultDataTypeSpec, "DefaultDataTypeSpec"), root_1); - - adaptor.addChild(root_1, stream_fullDataTypeSpec.nextTree()); - - adaptor.addChild(root_0, root_1); - } - - } - - retval.tree = root_0; - } - - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "defaultDataTypeSpec" - - public static class fullDataTypeSpec_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "fullDataTypeSpec" - // ../completeOncoPrintSpecAST.g:166:1: fullDataTypeSpec : ':' ( dataTypeSpec )+ ';' -> ( dataTypeSpec )+ ; - public final completeOncoPrintSpecASTParser.fullDataTypeSpec_return fullDataTypeSpec() throws RecognitionException { - completeOncoPrintSpecASTParser.fullDataTypeSpec_return retval = new completeOncoPrintSpecASTParser.fullDataTypeSpec_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token char_literal16=null; - Token char_literal18=null; - completeOncoPrintSpecASTParser.dataTypeSpec_return dataTypeSpec17 = null; - - - Object char_literal16_tree=null; - Object char_literal18_tree=null; - RewriteRuleTokenStream stream_24=new RewriteRuleTokenStream(adaptor,"token 24"); - RewriteRuleTokenStream stream_25=new RewriteRuleTokenStream(adaptor,"token 25"); - RewriteRuleSubtreeStream stream_dataTypeSpec=new RewriteRuleSubtreeStream(adaptor,"rule dataTypeSpec"); - try { - // ../completeOncoPrintSpecAST.g:167:2: ( ':' ( dataTypeSpec )+ ';' -> ( dataTypeSpec )+ ) - // ../completeOncoPrintSpecAST.g:167:4: ':' ( dataTypeSpec )+ ';' - { - char_literal16=(Token)match(input,24,FOLLOW_24_in_fullDataTypeSpec222); - stream_24.add(char_literal16); - - // ../completeOncoPrintSpecAST.g:167:8: ( dataTypeSpec )+ - int cnt6=0; - loop6: - do { - int alt6=2; - int LA6_0 = input.LA(1); - - if ( (LA6_0==ID) ) { - alt6=1; - } - - - switch (alt6) { - case 1 : - // ../completeOncoPrintSpecAST.g:167:10: dataTypeSpec - { - pushFollow(FOLLOW_dataTypeSpec_in_fullDataTypeSpec226); - dataTypeSpec17=dataTypeSpec(); - - state._fsp--; - - stream_dataTypeSpec.add(dataTypeSpec17.getTree()); - - } - break; - - default : - if ( cnt6 >= 1 ) break loop6; - EarlyExitException eee = - new EarlyExitException(6, input); - throw eee; - } - cnt6++; - } while (true); - - char_literal18=(Token)match(input,25,FOLLOW_25_in_fullDataTypeSpec231); - stream_25.add(char_literal18); - - - - // AST REWRITE - // elements: dataTypeSpec - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 167:30: -> ( dataTypeSpec )+ - { - if ( !(stream_dataTypeSpec.hasNext()) ) { - throw new RewriteEarlyExitException(); - } - while ( stream_dataTypeSpec.hasNext() ) { - adaptor.addChild(root_0, stream_dataTypeSpec.nextTree()); - - } - stream_dataTypeSpec.reset(); - - } - - retval.tree = root_0; - } - - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "fullDataTypeSpec" - - public static class dataTypeSpec_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "dataTypeSpec" - // ../completeOncoPrintSpecAST.g:172:1: dataTypeSpec : ( ID -> ^( DataTypeOrLevel ID ) | discreteDataType | continuousDataTypeInequality ); - public final completeOncoPrintSpecASTParser.dataTypeSpec_return dataTypeSpec() throws RecognitionException { - completeOncoPrintSpecASTParser.dataTypeSpec_return retval = new completeOncoPrintSpecASTParser.dataTypeSpec_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token ID19=null; - completeOncoPrintSpecASTParser.discreteDataType_return discreteDataType20 = null; - - completeOncoPrintSpecASTParser.continuousDataTypeInequality_return continuousDataTypeInequality21 = null; - - - Object ID19_tree=null; - RewriteRuleTokenStream stream_ID=new RewriteRuleTokenStream(adaptor,"token ID"); - - try { - // ../completeOncoPrintSpecAST.g:173:2: ( ID -> ^( DataTypeOrLevel ID ) | discreteDataType | continuousDataTypeInequality ) - int alt7=3; - int LA7_0 = input.LA(1); - - if ( (LA7_0==ID) ) { - switch ( input.LA(2) ) { - case COMPARISON_OP: - { - int LA7_2 = input.LA(3); - - if ( (LA7_2==ID) ) { - alt7=2; - } - else if ( (LA7_2==SIGNED_INT||LA7_2==SIGNED_FLOAT) ) { - alt7=3; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 7, 2, input); - - throw nvae; - } - } - break; - case SIGNED_INT: - { - alt7=2; - } - break; - case ID: - case 25: - { - alt7=1; - } - break; - default: - NoViableAltException nvae = - new NoViableAltException("", 7, 1, input); - - throw nvae; - } - - } - else { - NoViableAltException nvae = - new NoViableAltException("", 7, 0, input); - - throw nvae; - } - switch (alt7) { - case 1 : - // ../completeOncoPrintSpecAST.g:174:2: ID - { - ID19=(Token)match(input,ID,FOLLOW_ID_in_dataTypeSpec251); - stream_ID.add(ID19); - - - - // AST REWRITE - // elements: ID - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 174:5: -> ^( DataTypeOrLevel ID ) - { - // ../completeOncoPrintSpecAST.g:174:8: ^( DataTypeOrLevel ID ) - { - Object root_1 = (Object)adaptor.nil(); - root_1 = (Object)adaptor.becomeRoot((Object)adaptor.create(DataTypeOrLevel, "DataTypeOrLevel"), root_1); - - adaptor.addChild(root_1, stream_ID.nextNode()); - - adaptor.addChild(root_0, root_1); - } - - } - - retval.tree = root_0; - } - break; - case 2 : - // ../completeOncoPrintSpecAST.g:175:4: discreteDataType - { - root_0 = (Object)adaptor.nil(); - - pushFollow(FOLLOW_discreteDataType_in_dataTypeSpec265); - discreteDataType20=discreteDataType(); - - state._fsp--; - - adaptor.addChild(root_0, discreteDataType20.getTree()); - - } - break; - case 3 : - // ../completeOncoPrintSpecAST.g:176:4: continuousDataTypeInequality - { - root_0 = (Object)adaptor.nil(); - - pushFollow(FOLLOW_continuousDataTypeInequality_in_dataTypeSpec271); - continuousDataTypeInequality21=continuousDataTypeInequality(); - - state._fsp--; - - adaptor.addChild(root_0, continuousDataTypeInequality21.getTree()); - - } - break; - - } - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "dataTypeSpec" - - public static class discreteDataType_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "discreteDataType" - // ../completeOncoPrintSpecAST.g:182:1: discreteDataType : ( ( ID COMPARISON_OP ID ) -> ^( DiscreteDataType ID COMPARISON_OP ID ) | ( ID SIGNED_INT ) -> ^( DiscreteDataType ID SIGNED_INT ) ); - public final completeOncoPrintSpecASTParser.discreteDataType_return discreteDataType() throws RecognitionException { - completeOncoPrintSpecASTParser.discreteDataType_return retval = new completeOncoPrintSpecASTParser.discreteDataType_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token ID22=null; - Token COMPARISON_OP23=null; - Token ID24=null; - Token ID25=null; - Token SIGNED_INT26=null; - - Object ID22_tree=null; - Object COMPARISON_OP23_tree=null; - Object ID24_tree=null; - Object ID25_tree=null; - Object SIGNED_INT26_tree=null; - RewriteRuleTokenStream stream_SIGNED_INT=new RewriteRuleTokenStream(adaptor,"token SIGNED_INT"); - RewriteRuleTokenStream stream_ID=new RewriteRuleTokenStream(adaptor,"token ID"); - RewriteRuleTokenStream stream_COMPARISON_OP=new RewriteRuleTokenStream(adaptor,"token COMPARISON_OP"); - - try { - // ../completeOncoPrintSpecAST.g:183:2: ( ( ID COMPARISON_OP ID ) -> ^( DiscreteDataType ID COMPARISON_OP ID ) | ( ID SIGNED_INT ) -> ^( DiscreteDataType ID SIGNED_INT ) ) - int alt8=2; - int LA8_0 = input.LA(1); - - if ( (LA8_0==ID) ) { - int LA8_1 = input.LA(2); - - if ( (LA8_1==COMPARISON_OP) ) { - alt8=1; - } - else if ( (LA8_1==SIGNED_INT) ) { - alt8=2; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 8, 1, input); - - throw nvae; - } - } - else { - NoViableAltException nvae = - new NoViableAltException("", 8, 0, input); - - throw nvae; - } - switch (alt8) { - case 1 : - // ../completeOncoPrintSpecAST.g:184:2: ( ID COMPARISON_OP ID ) - { - // ../completeOncoPrintSpecAST.g:184:2: ( ID COMPARISON_OP ID ) - // ../completeOncoPrintSpecAST.g:184:4: ID COMPARISON_OP ID - { - ID22=(Token)match(input,ID,FOLLOW_ID_in_discreteDataType297); - stream_ID.add(ID22); - - COMPARISON_OP23=(Token)match(input,COMPARISON_OP,FOLLOW_COMPARISON_OP_in_discreteDataType299); - stream_COMPARISON_OP.add(COMPARISON_OP23); - - ID24=(Token)match(input,ID,FOLLOW_ID_in_discreteDataType301); - stream_ID.add(ID24); - - - } - - - - // AST REWRITE - // elements: ID, COMPARISON_OP, ID - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 184:25: -> ^( DiscreteDataType ID COMPARISON_OP ID ) - { - // ../completeOncoPrintSpecAST.g:184:28: ^( DiscreteDataType ID COMPARISON_OP ID ) - { - Object root_1 = (Object)adaptor.nil(); - root_1 = (Object)adaptor.becomeRoot((Object)adaptor.create(DiscreteDataType, "DiscreteDataType"), root_1); - - adaptor.addChild(root_1, stream_ID.nextNode()); - adaptor.addChild(root_1, stream_COMPARISON_OP.nextNode()); - adaptor.addChild(root_1, stream_ID.nextNode()); - - adaptor.addChild(root_0, root_1); - } - - } - - retval.tree = root_0; - } - break; - case 2 : - // ../completeOncoPrintSpecAST.g:185:4: ( ID SIGNED_INT ) - { - // ../completeOncoPrintSpecAST.g:185:4: ( ID SIGNED_INT ) - // ../completeOncoPrintSpecAST.g:185:6: ID SIGNED_INT - { - ID25=(Token)match(input,ID,FOLLOW_ID_in_discreteDataType323); - stream_ID.add(ID25); - - SIGNED_INT26=(Token)match(input,SIGNED_INT,FOLLOW_SIGNED_INT_in_discreteDataType325); - stream_SIGNED_INT.add(SIGNED_INT26); - - - } - - - - // AST REWRITE - // elements: ID, SIGNED_INT - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 185:22: -> ^( DiscreteDataType ID SIGNED_INT ) - { - // ../completeOncoPrintSpecAST.g:185:25: ^( DiscreteDataType ID SIGNED_INT ) - { - Object root_1 = (Object)adaptor.nil(); - root_1 = (Object)adaptor.becomeRoot((Object)adaptor.create(DiscreteDataType, "DiscreteDataType"), root_1); - - adaptor.addChild(root_1, stream_ID.nextNode()); - adaptor.addChild(root_1, stream_SIGNED_INT.nextNode()); - - adaptor.addChild(root_0, root_1); - } - - } - - retval.tree = root_0; - } - break; - - } - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "discreteDataType" - - public static class continuousDataTypeInequality_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "continuousDataTypeInequality" - // ../completeOncoPrintSpecAST.g:190:1: continuousDataTypeInequality : ( ID COMPARISON_OP floatOrInt ) -> ^( ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) ; - public final completeOncoPrintSpecASTParser.continuousDataTypeInequality_return continuousDataTypeInequality() throws RecognitionException { - completeOncoPrintSpecASTParser.continuousDataTypeInequality_return retval = new completeOncoPrintSpecASTParser.continuousDataTypeInequality_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token ID27=null; - Token COMPARISON_OP28=null; - completeOncoPrintSpecASTParser.floatOrInt_return floatOrInt29 = null; - - - Object ID27_tree=null; - Object COMPARISON_OP28_tree=null; - RewriteRuleTokenStream stream_ID=new RewriteRuleTokenStream(adaptor,"token ID"); - RewriteRuleTokenStream stream_COMPARISON_OP=new RewriteRuleTokenStream(adaptor,"token COMPARISON_OP"); - RewriteRuleSubtreeStream stream_floatOrInt=new RewriteRuleSubtreeStream(adaptor,"rule floatOrInt"); - try { - // ../completeOncoPrintSpecAST.g:191:2: ( ( ID COMPARISON_OP floatOrInt ) -> ^( ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) ) - // ../completeOncoPrintSpecAST.g:192:2: ( ID COMPARISON_OP floatOrInt ) - { - // ../completeOncoPrintSpecAST.g:192:2: ( ID COMPARISON_OP floatOrInt ) - // ../completeOncoPrintSpecAST.g:192:4: ID COMPARISON_OP floatOrInt - { - ID27=(Token)match(input,ID,FOLLOW_ID_in_continuousDataTypeInequality366); - stream_ID.add(ID27); - - COMPARISON_OP28=(Token)match(input,COMPARISON_OP,FOLLOW_COMPARISON_OP_in_continuousDataTypeInequality368); - stream_COMPARISON_OP.add(COMPARISON_OP28); - - pushFollow(FOLLOW_floatOrInt_in_continuousDataTypeInequality370); - floatOrInt29=floatOrInt(); - - state._fsp--; - - stream_floatOrInt.add(floatOrInt29.getTree()); - - } - - - - // AST REWRITE - // elements: ID, floatOrInt, COMPARISON_OP - // token labels: - // rule labels: retval - // token list labels: - // rule list labels: - // wildcard labels: - retval.tree = root_0; - RewriteRuleSubtreeStream stream_retval=new RewriteRuleSubtreeStream(adaptor,"rule retval",retval!=null?retval.tree:null); - - root_0 = (Object)adaptor.nil(); - // 192:34: -> ^( ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) - { - // ../completeOncoPrintSpecAST.g:193:3: ^( ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) - { - Object root_1 = (Object)adaptor.nil(); - root_1 = (Object)adaptor.becomeRoot((Object)adaptor.create(ContinuousDataTypeInequality, "ContinuousDataTypeInequality"), root_1); - - adaptor.addChild(root_1, stream_ID.nextNode()); - adaptor.addChild(root_1, stream_COMPARISON_OP.nextNode()); - adaptor.addChild(root_1, stream_floatOrInt.nextTree()); - - adaptor.addChild(root_0, root_1); - } - - } - - retval.tree = root_0; - } - - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "continuousDataTypeInequality" - - public static class floatOrInt_return extends ParserRuleReturnScope { - Object tree; - public Object getTree() { return tree; } - }; - - // $ANTLR start "floatOrInt" - // ../completeOncoPrintSpecAST.g:196:1: floatOrInt : ( SIGNED_FLOAT | SIGNED_INT ); - public final completeOncoPrintSpecASTParser.floatOrInt_return floatOrInt() throws RecognitionException { - completeOncoPrintSpecASTParser.floatOrInt_return retval = new completeOncoPrintSpecASTParser.floatOrInt_return(); - retval.start = input.LT(1); - - Object root_0 = null; - - Token set30=null; - - Object set30_tree=null; - - try { - // ../completeOncoPrintSpecAST.g:197:2: ( SIGNED_FLOAT | SIGNED_INT ) - // ../completeOncoPrintSpecAST.g: - { - root_0 = (Object)adaptor.nil(); - - set30=(Token)input.LT(1); - if ( input.LA(1)==SIGNED_INT||input.LA(1)==SIGNED_FLOAT ) { - input.consume(); - adaptor.addChild(root_0, (Object)adaptor.create(set30)); - state.errorRecovery=false; - } - else { - MismatchedSetException mse = new MismatchedSetException(null,input); - throw mse; - } - - - } - - retval.stop = input.LT(-1); - - retval.tree = (Object)adaptor.rulePostProcessing(root_0); - adaptor.setTokenBoundaries(retval.tree, retval.start, retval.stop); - - } - catch (RecognitionException re) { - reportError(re); - recover(input,re); - retval.tree = (Object)adaptor.errorNode(input, retval.start, input.LT(-1), re); - - } - finally { - } - return retval; - } - // $ANTLR end "floatOrInt" - - // Delegated rules - - - - - public static final BitSet FOLLOW_userGeneList_in_oncoPrintSpecification45 = new BitSet(new long[]{0x0000000000A00052L}); - public static final BitSet FOLLOW_geneList_in_userGeneList65 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_21_in_userGeneList75 = new BitSet(new long[]{0x0000000000800040L}); - public static final BitSet FOLLOW_geneList_in_userGeneList77 = new BitSet(new long[]{0x0000000000400000L}); - public static final BitSet FOLLOW_22_in_userGeneList79 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_STRING_in_userGeneList85 = new BitSet(new long[]{0x0000000000200000L}); - public static final BitSet FOLLOW_21_in_userGeneList87 = new BitSet(new long[]{0x0000000000800040L}); - public static final BitSet FOLLOW_geneList_in_userGeneList89 = new BitSet(new long[]{0x0000000000400000L}); - public static final BitSet FOLLOW_22_in_userGeneList91 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_individualGene_in_geneList135 = new BitSet(new long[]{0x0000000000800042L}); - public static final BitSet FOLLOW_defaultDataTypeSpec_in_geneList139 = new BitSet(new long[]{0x0000000000800042L}); - public static final BitSet FOLLOW_ID_in_individualGene155 = new BitSet(new long[]{0x0000000001000002L}); - public static final BitSet FOLLOW_fullDataTypeSpec_in_individualGene157 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_23_in_defaultDataTypeSpec190 = new BitSet(new long[]{0x0000000001000000L}); - public static final BitSet FOLLOW_fullDataTypeSpec_in_defaultDataTypeSpec194 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_24_in_fullDataTypeSpec222 = new BitSet(new long[]{0x0000000000000040L}); - public static final BitSet FOLLOW_dataTypeSpec_in_fullDataTypeSpec226 = new BitSet(new long[]{0x0000000002000040L}); - public static final BitSet FOLLOW_25_in_fullDataTypeSpec231 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_ID_in_dataTypeSpec251 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_discreteDataType_in_dataTypeSpec265 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_continuousDataTypeInequality_in_dataTypeSpec271 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_ID_in_discreteDataType297 = new BitSet(new long[]{0x0000000000000400L}); - public static final BitSet FOLLOW_COMPARISON_OP_in_discreteDataType299 = new BitSet(new long[]{0x0000000000000040L}); - public static final BitSet FOLLOW_ID_in_discreteDataType301 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_ID_in_discreteDataType323 = new BitSet(new long[]{0x0000000000000800L}); - public static final BitSet FOLLOW_SIGNED_INT_in_discreteDataType325 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_ID_in_continuousDataTypeInequality366 = new BitSet(new long[]{0x0000000000000400L}); - public static final BitSet FOLLOW_COMPARISON_OP_in_continuousDataTypeInequality368 = new BitSet(new long[]{0x0000000000002800L}); - public static final BitSet FOLLOW_floatOrInt_in_continuousDataTypeInequality370 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_set_in_floatOrInt0 = new BitSet(new long[]{0x0000000000000002L}); - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTwalker.g b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTwalker.g deleted file mode 100644 index c8e6553c2b4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTwalker.g +++ /dev/null @@ -1,228 +0,0 @@ -tree grammar completeOncoPrintSpecASTwalker; - -options { - tokenVocab=completeOncoPrintSpecAST; // import tokens from completeOncoPrintSpecAST.g - ASTLabelType=CommonTree; -} -@header { - package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - import java.util.ArrayList; - import org.mskcc.cbio.portal.oncoPrintSpecLanguage.*; - import static java.lang.System.out; -} - -// Alter code generation so catch-clauses get replaced with this action. -@rulecatch { - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } -} - -@members{ - // create default, which can be replaced with 'DATATYPES' specs - OncoPrintGeneDisplaySpec theDefaultOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec( ); - - // APG ERRORS: list of errors - ArrayList listOfErrors; - - public int increment( int n ){ - return n+1; - } - - public void generateOncoError( int charPos, int line, String token, String msg) throws IllegalArgumentException{ - - throw new OncoPrintLangException( "Error at char " + increment(charPos) + " of line " + line + - ": '" + token + "'" + msg ); - } - - // make comprehensible errors for users - // TODO: AVOID DUPLICATION WITH completeOncoPrintSpecAST.g - public void newReportError(OncoPrintLangException e) throws OncoPrintLangException{ - // if we've already reported an error and have not matched a token - // yet successfully, don't report any errors. - if ( state.errorRecovery ) { - //System.err.print("[SPURIOUS] "); - return; - } - state.syntaxErrors++; // don't count spurious - state.errorRecovery = true; - // displayRecognitionError(this.getTokenNames(), e); - /* APG ERROR handling - if collecting errors, add to list - else throw IAE - */ - if( null != listOfErrors){ - listOfErrors.add( e ); - }else{ - throw e; - } - } -} - -// everything is a userGeneList or a geneList, including a gene by itself -oncoPrintSpecification returns [OncoPrintSpecification theOncoPrintSpecification, - ArrayList returnListOfErrors] -@init{ - // ACTION: initialize default OncoPrintSpecification - $theOncoPrintSpecification = new OncoPrintSpecification( ); - // theDefaultOncoPrintGeneDisplaySpec.setDefault(); - - // APG ERRORS: initialize error list - listOfErrors = new ArrayList(); -} - : - ( userGeneList - { - $theOncoPrintSpecification.add( $userGeneList.theGeneSet ); - } - )+ - // APG ERRORS: return list of all exceptions - { - $returnListOfErrors = listOfErrors; - } - ; - -userGeneList returns [GeneSet theGeneSet] - : ^(UserGeneList geneList STRING? ) - { - $geneList.theGeneSet.setUserGeneList( $STRING.text); - $theGeneSet = $geneList.theGeneSet; - } - | geneList - { - $theGeneSet = $geneList.theGeneSet; - } - ; - -geneList returns [GeneSet theGeneSet] -@init{ - // create GeneSet - $theGeneSet = new GeneSet(); -} - : - (individualGene - { - // add gene to the set - $theGeneSet.addGeneWithSpec( $individualGene.theGeneWithSpec ); - } - | defaultDataTypeSpec )+ // nothing to do, but might be in the list - ; - -individualGene returns [GeneWithSpec theGeneWithSpec] - : - ^(IndividualGene ID fullDataTypeSpec?) - // optional elements are null if not present - { - // TODO: remove this test, because gene names are checked elsewhere - // check that ID is a gene - if( !Gene.valid( $ID.text ) ){ - generateOncoError( $ID.pos, $ID.line, $ID.text, " is not a valid gene or microRNA name." ); - } - $theGeneWithSpec = GeneWithSpec.geneWithSpecGenerator( $ID.text, - $fullDataTypeSpec.theOncoPrintGeneDisplaySpec, - theDefaultOncoPrintGeneDisplaySpec ); - } - ; - -defaultDataTypeSpec - : ^(DefaultDataTypeSpec fullDataTypeSpec) - { - // set the global default - theDefaultOncoPrintGeneDisplaySpec = $fullDataTypeSpec.theOncoPrintGeneDisplaySpec; - } - ; - -fullDataTypeSpec returns [OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec] -@init{ - // create a Parsed ... - ParsedFullDataTypeSpec theParsedFullDataTypeSpec = new ParsedFullDataTypeSpec(); -} - : - (dataTypeSpec - { - // save to a Parsed ... - theParsedFullDataTypeSpec.addSpec( $dataTypeSpec.theDataTypeSpec ); - } - )+ - { - // clean the parsed, and return the simplified spec - $theOncoPrintGeneDisplaySpec = theParsedFullDataTypeSpec.cleanUpInput(); - } - ; - -dataTypeSpec returns [DataTypeSpec theDataTypeSpec] - : - ^(DataTypeOrLevel ID) // may be discrete or continuous dataType or discrete level - { - $theDataTypeSpec = ConcreteDataTypeSpec.concreteDataTypeSpecGenerator( $ID.text ); - if( null == $theDataTypeSpec ){ - $theDataTypeSpec = DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelName( $ID.text ); - } - if( null == $theDataTypeSpec ){ - // APG ERRORS: throw IAE - generateOncoError( $ID.pos, $ID.line, $ID.text, " is not a valid genetic data type or data level." ); - } - } - | discreteDataType - { - $theDataTypeSpec = $discreteDataType.theDataTypeSpec; - } - | continuousDataTypeInequality - { - $theDataTypeSpec = $continuousDataTypeInequality.theContinuousDataTypeSpec; - } - ; - -discreteDataType returns [DataTypeSpec theDataTypeSpec] - : - // since the tree has 2 IDs, they need separate names; handy ANTLR feature - ^(DiscreteDataType type=ID COMPARISON_OP level=ID ) - { - $theDataTypeSpec = DiscreteDataTypeSpec.discreteDataTypeSpecGenerator( $type.text, $COMPARISON_OP.text, $level.text ); - // TODO: more specific error about type or level - if( null == $theDataTypeSpec ){ - // APG ERRORS: throw IAE - generateOncoError( $type.pos, $type.line, $type.text+ " " + $COMPARISON_OP.text+ " " + $level.text, - " is not a valid discrete genetic data type and discrete genetic data level." ); - } - } - | - ^(DiscreteDataType ID SIGNED_INT ) - { - $theDataTypeSpec = DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode( $ID.text, $SIGNED_INT.text ); - if( null == $theDataTypeSpec ){ - // APG ERRORS: throw IAE - generateOncoError( $ID.pos, $ID.line, $ID.text + " " + $SIGNED_INT.text, - " is not a valid genetic data type and GISTIC code." ); - } - } - ; - -floatOrInt returns [String number] - : - SIGNED_FLOAT - { - $number = $SIGNED_FLOAT.text; - } - | SIGNED_INT - { - $number = $SIGNED_INT.text; - } - ; - -continuousDataTypeInequality returns [ContinuousDataTypeSpec theContinuousDataTypeSpec] - : - ^(ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) - { - $theContinuousDataTypeSpec = ContinuousDataTypeSpec.continuousDataTypeSpecGenerator( - $ID.text, $COMPARISON_OP.text, $floatOrInt.number ); - if( null == $theContinuousDataTypeSpec ){ - generateOncoError( $ID.pos, $ID.line, $ID.text, " is not a valid genetic data type." ); - } - } - ; \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTwalker.java b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTwalker.java deleted file mode 100644 index 966d46147d8..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecASTwalker.java +++ /dev/null @@ -1,986 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - - -// $ANTLR 3.2 Sep 23, 2009 12:02:23 ../completeOncoPrintSpecASTwalker.g 2010-12-14 17:00:19 -// TODO: upgrade to ANTLR 3.3 - - package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - import java.util.ArrayList; - import org.mskcc.cbio.portal.oncoPrintSpecLanguage.*; - import static java.lang.System.out; - - -import org.antlr.runtime.*; -import org.antlr.runtime.tree.*;import java.util.Stack; -import java.util.List; -import java.util.ArrayList; - -public class completeOncoPrintSpecASTwalker extends TreeParser { - public static final String[] tokenNames = new String[] { - "", "", "", "", "STRING", "UserGeneList", "ID", "IndividualGene", "DefaultDataTypeSpec", "DataTypeOrLevel", "COMPARISON_OP", "SIGNED_INT", "DiscreteDataType", "SIGNED_FLOAT", "ContinuousDataTypeInequality", "INT", "WS", "ESC_SEQ", "UNICODE_ESC", "OCTAL_ESC", "HEX_DIGIT", "'{'", "'}'", "'DATATYPES'", "':'", "';'" - }; - public static final int T__25=25; - public static final int T__24=24; - public static final int T__23=23; - public static final int T__22=22; - public static final int UserGeneList=5; - public static final int T__21=21; - public static final int COMPARISON_OP=10; - public static final int UNICODE_ESC=18; - public static final int OCTAL_ESC=19; - public static final int HEX_DIGIT=20; - public static final int INT=15; - public static final int ID=6; - public static final int EOF=-1; - public static final int DiscreteDataType=12; - public static final int ContinuousDataTypeInequality=14; - public static final int SIGNED_INT=11; - public static final int WS=16; - public static final int ESC_SEQ=17; - public static final int DataTypeOrLevel=9; - public static final int DefaultDataTypeSpec=8; - public static final int IndividualGene=7; - public static final int SIGNED_FLOAT=13; - public static final int STRING=4; - - // delegates - // delegators - - - public completeOncoPrintSpecASTwalker(TreeNodeStream input) { - this(input, new RecognizerSharedState()); - } - public completeOncoPrintSpecASTwalker(TreeNodeStream input, RecognizerSharedState state) { - super(input, state); - - } - - - public String[] getTokenNames() { return completeOncoPrintSpecASTwalker.tokenNames; } - public String getGrammarFileName() { return "../completeOncoPrintSpecASTwalker.g"; } - - - // create default, which can be replaced with 'DATATYPES' specs - OncoPrintGeneDisplaySpec theDefaultOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec( ); - - // APG ERRORS: list of errors - ArrayList listOfErrors; - - public int increment( int n ){ - return n+1; - } - - public void generateOncoError( int charPos, int line, String token, String msg) throws IllegalArgumentException{ - - throw new OncoPrintLangException( "Error at char " + increment(charPos) + " of line " + line + - ": '" + token + "'" + msg ); - } - - // make comprehensible errors for users - // TODO: AVOID DUPLICATION WITH completeOncoPrintSpecAST.g - public void newReportError(OncoPrintLangException e) throws OncoPrintLangException{ - // if we've already reported an error and have not matched a token - // yet successfully, don't report any errors. - if ( state.errorRecovery ) { - //System.err.print("[SPURIOUS] "); - return; - } - state.syntaxErrors++; // don't count spurious - state.errorRecovery = true; - // displayRecognitionError(this.getTokenNames(), e); - /* APG ERROR handling - if collecting errors, add to list - else throw IAE - */ - if( null != listOfErrors){ - listOfErrors.add( e ); - }else{ - throw e; - } - } - - - public static class oncoPrintSpecification_return extends TreeRuleReturnScope { - public OncoPrintSpecification theOncoPrintSpecification; - public ArrayList returnListOfErrors; - }; - - // $ANTLR start "oncoPrintSpecification" - // ../completeOncoPrintSpecASTwalker.g:68:1: oncoPrintSpecification returns [OncoPrintSpecification theOncoPrintSpecification, \n\tArrayList returnListOfErrors] : ( userGeneList )+ ; - - // TODO: MAJOR, MAJOR PROBLEM; figure out how to do this without hand-altering the parser - public final completeOncoPrintSpecASTwalker.oncoPrintSpecification_return oncoPrintSpecification( OncoPrintGeneDisplaySpec anOncoPrintGeneDisplaySpec ) - throws RecognitionException { - completeOncoPrintSpecASTwalker.oncoPrintSpecification_return retval = new completeOncoPrintSpecASTwalker.oncoPrintSpecification_return(); - retval.start = input.LT(1); - - GeneSet userGeneList1 = null; - - - - // ACTION: initialize default OncoPrintSpecification - retval.theOncoPrintSpecification = new OncoPrintSpecification( ); - // TODO: recompile grammar, eliminating this - theDefaultOncoPrintGeneDisplaySpec = anOncoPrintGeneDisplaySpec; - - // APG ERRORS: initialize error list - listOfErrors = new ArrayList(); - - try { - // ../completeOncoPrintSpecASTwalker.g:78:2: ( ( userGeneList )+ ) - // ../completeOncoPrintSpecASTwalker.g:79:2: ( userGeneList )+ - { - // ../completeOncoPrintSpecASTwalker.g:79:2: ( userGeneList )+ - int cnt1=0; - loop1: - do { - int alt1=2; - int LA1_0 = input.LA(1); - - if ( (LA1_0==UserGeneList||(LA1_0>=IndividualGene && LA1_0<=DefaultDataTypeSpec)) ) { - alt1=1; - } - - - switch (alt1) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:79:4: userGeneList - { - pushFollow(FOLLOW_userGeneList_in_oncoPrintSpecification62); - userGeneList1=userGeneList(); - - state._fsp--; - - - retval.theOncoPrintSpecification.add( userGeneList1 ); - - - } - break; - - default : - if ( cnt1 >= 1 ) break loop1; - EarlyExitException eee = - new EarlyExitException(1, input); - throw eee; - } - cnt1++; - } while (true); - - - retval.returnListOfErrors = listOfErrors; - - - } - - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return retval; - } - // $ANTLR end "oncoPrintSpecification" - - - // $ANTLR start "userGeneList" - // ../completeOncoPrintSpecASTwalker.g:90:1: userGeneList returns [GeneSet theGeneSet] : ( ^( UserGeneList geneList ( STRING )? ) | geneList ); - public final GeneSet userGeneList() throws RecognitionException { - GeneSet theGeneSet = null; - - CommonTree STRING3=null; - GeneSet geneList2 = null; - - GeneSet geneList4 = null; - - - try { - // ../completeOncoPrintSpecASTwalker.g:91:2: ( ^( UserGeneList geneList ( STRING )? ) | geneList ) - int alt3=2; - int LA3_0 = input.LA(1); - - if ( (LA3_0==UserGeneList) ) { - alt3=1; - } - else if ( ((LA3_0>=IndividualGene && LA3_0<=DefaultDataTypeSpec)) ) { - alt3=2; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 3, 0, input); - - throw nvae; - } - switch (alt3) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:91:4: ^( UserGeneList geneList ( STRING )? ) - { - match(input,UserGeneList,FOLLOW_UserGeneList_in_userGeneList91); - - match(input, Token.DOWN, null); - pushFollow(FOLLOW_geneList_in_userGeneList93); - geneList2=geneList(); - - state._fsp--; - - // ../completeOncoPrintSpecASTwalker.g:91:28: ( STRING )? - int alt2=2; - int LA2_0 = input.LA(1); - - if ( (LA2_0==STRING) ) { - alt2=1; - } - switch (alt2) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:91:28: STRING - { - STRING3=(CommonTree)match(input,STRING,FOLLOW_STRING_in_userGeneList95); - - } - break; - - } - - - match(input, Token.UP, null); - - geneList2.setUserGeneList( (STRING3!=null?STRING3.getText():null)); - theGeneSet = geneList2; - - - } - break; - case 2 : - // ../completeOncoPrintSpecASTwalker.g:96:4: geneList - { - pushFollow(FOLLOW_geneList_in_userGeneList106); - geneList4=geneList(); - - state._fsp--; - - - theGeneSet = geneList4; - - - } - break; - - } - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return theGeneSet; - } - // $ANTLR end "userGeneList" - - - // $ANTLR start "geneList" - // ../completeOncoPrintSpecASTwalker.g:102:1: geneList returns [GeneSet theGeneSet] : ( individualGene | defaultDataTypeSpec )+ ; - public final GeneSet geneList() throws RecognitionException { - GeneSet theGeneSet = null; - - GeneWithSpec individualGene5 = null; - - - - // create GeneSet - theGeneSet = new GeneSet(); - - try { - // ../completeOncoPrintSpecASTwalker.g:107:2: ( ( individualGene | defaultDataTypeSpec )+ ) - // ../completeOncoPrintSpecASTwalker.g:108:2: ( individualGene | defaultDataTypeSpec )+ - { - // ../completeOncoPrintSpecASTwalker.g:108:2: ( individualGene | defaultDataTypeSpec )+ - int cnt4=0; - loop4: - do { - int alt4=3; - int LA4_0 = input.LA(1); - - if ( (LA4_0==IndividualGene) ) { - alt4=1; - } - else if ( (LA4_0==DefaultDataTypeSpec) ) { - alt4=2; - } - - - switch (alt4) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:108:3: individualGene - { - pushFollow(FOLLOW_individualGene_in_geneList132); - individualGene5=individualGene(); - - state._fsp--; - - - // add gene to the set - theGeneSet.addGeneWithSpec( individualGene5 ); - - - } - break; - case 2 : - // ../completeOncoPrintSpecASTwalker.g:113:4: defaultDataTypeSpec - { - pushFollow(FOLLOW_defaultDataTypeSpec_in_geneList140); - defaultDataTypeSpec(); - - state._fsp--; - - - } - break; - - default : - if ( cnt4 >= 1 ) break loop4; - EarlyExitException eee = - new EarlyExitException(4, input); - throw eee; - } - cnt4++; - } while (true); - - - } - - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return theGeneSet; - } - // $ANTLR end "geneList" - - - // $ANTLR start "individualGene" - // ../completeOncoPrintSpecASTwalker.g:116:1: individualGene returns [GeneWithSpec theGeneWithSpec] : ^( IndividualGene ID ( fullDataTypeSpec )? ) ; - public final GeneWithSpec individualGene() throws RecognitionException { - GeneWithSpec theGeneWithSpec = null; - - CommonTree ID6=null; - OncoPrintGeneDisplaySpec fullDataTypeSpec7 = null; - - - try { - // ../completeOncoPrintSpecASTwalker.g:117:2: ( ^( IndividualGene ID ( fullDataTypeSpec )? ) ) - // ../completeOncoPrintSpecASTwalker.g:118:2: ^( IndividualGene ID ( fullDataTypeSpec )? ) - { - match(input,IndividualGene,FOLLOW_IndividualGene_in_individualGene161); - - match(input, Token.DOWN, null); - ID6=(CommonTree)match(input,ID,FOLLOW_ID_in_individualGene163); - // ../completeOncoPrintSpecASTwalker.g:118:22: ( fullDataTypeSpec )? - int alt5=2; - int LA5_0 = input.LA(1); - - if ( (LA5_0==DataTypeOrLevel||LA5_0==DiscreteDataType||LA5_0==ContinuousDataTypeInequality) ) { - alt5=1; - } - switch (alt5) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:118:22: fullDataTypeSpec - { - pushFollow(FOLLOW_fullDataTypeSpec_in_individualGene165); - fullDataTypeSpec7=fullDataTypeSpec(); - - state._fsp--; - - - } - break; - - } - - - match(input, Token.UP, null); - - // TODO: remove this test, because gene names are checked elsewhere - // check that ID is a gene - if( !Gene.valid( (ID6!=null?ID6.getText():null) ) ){ - generateOncoError( (ID6!=null?ID6.getCharPositionInLine():0), (ID6!=null?ID6.getLine():0), (ID6!=null?ID6.getText():null), " is not a valid gene or microRNA name." ); - } - theGeneWithSpec = GeneWithSpec.geneWithSpecGenerator( (ID6!=null?ID6.getText():null), - fullDataTypeSpec7, - theDefaultOncoPrintGeneDisplaySpec ); - - - } - - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return theGeneWithSpec; - } - // $ANTLR end "individualGene" - - - // $ANTLR start "defaultDataTypeSpec" - // ../completeOncoPrintSpecASTwalker.g:132:1: defaultDataTypeSpec : ^( DefaultDataTypeSpec fullDataTypeSpec ) ; - public final void defaultDataTypeSpec() throws RecognitionException { - OncoPrintGeneDisplaySpec fullDataTypeSpec8 = null; - - - try { - // ../completeOncoPrintSpecASTwalker.g:133:2: ( ^( DefaultDataTypeSpec fullDataTypeSpec ) ) - // ../completeOncoPrintSpecASTwalker.g:133:4: ^( DefaultDataTypeSpec fullDataTypeSpec ) - { - match(input,DefaultDataTypeSpec,FOLLOW_DefaultDataTypeSpec_in_defaultDataTypeSpec185); - - match(input, Token.DOWN, null); - pushFollow(FOLLOW_fullDataTypeSpec_in_defaultDataTypeSpec187); - fullDataTypeSpec8=fullDataTypeSpec(); - - state._fsp--; - - - match(input, Token.UP, null); - - // set the global default - theDefaultOncoPrintGeneDisplaySpec = fullDataTypeSpec8; - - - } - - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return ; - } - // $ANTLR end "defaultDataTypeSpec" - - - // $ANTLR start "fullDataTypeSpec" - // ../completeOncoPrintSpecASTwalker.g:140:1: fullDataTypeSpec returns [OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec] : ( dataTypeSpec )+ ; - public final OncoPrintGeneDisplaySpec fullDataTypeSpec() throws RecognitionException { - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = null; - - DataTypeSpec dataTypeSpec9 = null; - - - - // create a Parsed ... - ParsedFullDataTypeSpec theParsedFullDataTypeSpec = new ParsedFullDataTypeSpec(); - - try { - // ../completeOncoPrintSpecASTwalker.g:145:2: ( ( dataTypeSpec )+ ) - // ../completeOncoPrintSpecASTwalker.g:146:2: ( dataTypeSpec )+ - { - // ../completeOncoPrintSpecASTwalker.g:146:2: ( dataTypeSpec )+ - int cnt6=0; - loop6: - do { - int alt6=2; - int LA6_0 = input.LA(1); - - if ( (LA6_0==DataTypeOrLevel||LA6_0==DiscreteDataType||LA6_0==ContinuousDataTypeInequality) ) { - alt6=1; - } - - - switch (alt6) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:146:3: dataTypeSpec - { - pushFollow(FOLLOW_dataTypeSpec_in_fullDataTypeSpec213); - dataTypeSpec9=dataTypeSpec(); - - state._fsp--; - - - // save to a Parsed ... - theParsedFullDataTypeSpec.addSpec( dataTypeSpec9 ); - - - } - break; - - default : - if ( cnt6 >= 1 ) break loop6; - EarlyExitException eee = - new EarlyExitException(6, input); - throw eee; - } - cnt6++; - } while (true); - - - // clean the parsed, and return the simplified spec - theOncoPrintGeneDisplaySpec = theParsedFullDataTypeSpec.cleanUpInput(); - - - } - - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return theOncoPrintGeneDisplaySpec; - } - // $ANTLR end "fullDataTypeSpec" - - - // $ANTLR start "dataTypeSpec" - // ../completeOncoPrintSpecASTwalker.g:158:1: dataTypeSpec returns [DataTypeSpec theDataTypeSpec] : ( ^( DataTypeOrLevel ID ) | discreteDataType | continuousDataTypeInequality ); - public final DataTypeSpec dataTypeSpec() throws RecognitionException { - DataTypeSpec theDataTypeSpec = null; - - CommonTree ID10=null; - DataTypeSpec discreteDataType11 = null; - - ContinuousDataTypeSpec continuousDataTypeInequality12 = null; - - - try { - // ../completeOncoPrintSpecASTwalker.g:159:2: ( ^( DataTypeOrLevel ID ) | discreteDataType | continuousDataTypeInequality ) - int alt7=3; - switch ( input.LA(1) ) { - case DataTypeOrLevel: - { - alt7=1; - } - break; - case DiscreteDataType: - { - alt7=2; - } - break; - case ContinuousDataTypeInequality: - { - alt7=3; - } - break; - default: - NoViableAltException nvae = - new NoViableAltException("", 7, 0, input); - - throw nvae; - } - - switch (alt7) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:160:2: ^( DataTypeOrLevel ID ) - { - match(input,DataTypeOrLevel,FOLLOW_DataTypeOrLevel_in_dataTypeSpec242); - - match(input, Token.DOWN, null); - ID10=(CommonTree)match(input,ID,FOLLOW_ID_in_dataTypeSpec244); - - match(input, Token.UP, null); - - theDataTypeSpec = ConcreteDataTypeSpec.concreteDataTypeSpecGenerator( (ID10!=null?ID10.getText():null) ); - if( null == theDataTypeSpec ){ - theDataTypeSpec = DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelName( (ID10!=null?ID10.getText():null) ); - } - if( null == theDataTypeSpec ){ - // APG ERRORS: throw IAE - generateOncoError( (ID10!=null?ID10.getCharPositionInLine():0), (ID10!=null?ID10.getLine():0), (ID10!=null?ID10.getText():null), " is not a valid genetic data type or data level." ); - } - - - } - break; - case 2 : - // ../completeOncoPrintSpecASTwalker.g:171:4: discreteDataType - { - pushFollow(FOLLOW_discreteDataType_in_dataTypeSpec255); - discreteDataType11=discreteDataType(); - - state._fsp--; - - - theDataTypeSpec = discreteDataType11; - - - } - break; - case 3 : - // ../completeOncoPrintSpecASTwalker.g:175:4: continuousDataTypeInequality - { - pushFollow(FOLLOW_continuousDataTypeInequality_in_dataTypeSpec264); - continuousDataTypeInequality12=continuousDataTypeInequality(); - - state._fsp--; - - - theDataTypeSpec = continuousDataTypeInequality12; - - - } - break; - - } - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return theDataTypeSpec; - } - // $ANTLR end "dataTypeSpec" - - - // $ANTLR start "discreteDataType" - // ../completeOncoPrintSpecASTwalker.g:181:1: discreteDataType returns [DataTypeSpec theDataTypeSpec] : ( ^( DiscreteDataType type= ID COMPARISON_OP level= ID ) | ^( DiscreteDataType ID SIGNED_INT ) ); - public final DataTypeSpec discreteDataType() throws RecognitionException { - DataTypeSpec theDataTypeSpec = null; - - CommonTree type=null; - CommonTree level=null; - CommonTree COMPARISON_OP13=null; - CommonTree ID14=null; - CommonTree SIGNED_INT15=null; - - try { - // ../completeOncoPrintSpecASTwalker.g:182:2: ( ^( DiscreteDataType type= ID COMPARISON_OP level= ID ) | ^( DiscreteDataType ID SIGNED_INT ) ) - int alt8=2; - int LA8_0 = input.LA(1); - - if ( (LA8_0==DiscreteDataType) ) { - int LA8_1 = input.LA(2); - - if ( (LA8_1==DOWN) ) { - int LA8_2 = input.LA(3); - - if ( (LA8_2==ID) ) { - int LA8_3 = input.LA(4); - - if ( (LA8_3==COMPARISON_OP) ) { - alt8=1; - } - else if ( (LA8_3==SIGNED_INT) ) { - alt8=2; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 8, 3, input); - - throw nvae; - } - } - else { - NoViableAltException nvae = - new NoViableAltException("", 8, 2, input); - - throw nvae; - } - } - else { - NoViableAltException nvae = - new NoViableAltException("", 8, 1, input); - - throw nvae; - } - } - else { - NoViableAltException nvae = - new NoViableAltException("", 8, 0, input); - - throw nvae; - } - switch (alt8) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:184:2: ^( DiscreteDataType type= ID COMPARISON_OP level= ID ) - { - match(input,DiscreteDataType,FOLLOW_DiscreteDataType_in_discreteDataType288); - - match(input, Token.DOWN, null); - type=(CommonTree)match(input,ID,FOLLOW_ID_in_discreteDataType292); - COMPARISON_OP13=(CommonTree)match(input,COMPARISON_OP,FOLLOW_COMPARISON_OP_in_discreteDataType294); - level=(CommonTree)match(input,ID,FOLLOW_ID_in_discreteDataType298); - - match(input, Token.UP, null); - - theDataTypeSpec = DiscreteDataTypeSpec.discreteDataTypeSpecGenerator( (type!=null?type.getText():null), (COMPARISON_OP13!=null?COMPARISON_OP13.getText():null), (level!=null?level.getText():null) ); - // TODO: more specific error about type or level - if( null == theDataTypeSpec ){ - // APG ERRORS: throw IAE - generateOncoError( (type!=null?type.getCharPositionInLine():0), (type!=null?type.getLine():0), (type!=null?type.getText():null)+ " " + (COMPARISON_OP13!=null?COMPARISON_OP13.getText():null)+ " " + (level!=null?level.getText():null), - " is not a valid discrete genetic data type and discrete genetic data level." ); - } - - - } - break; - case 2 : - // ../completeOncoPrintSpecASTwalker.g:195:2: ^( DiscreteDataType ID SIGNED_INT ) - { - match(input,DiscreteDataType,FOLLOW_DiscreteDataType_in_discreteDataType311); - - match(input, Token.DOWN, null); - ID14=(CommonTree)match(input,ID,FOLLOW_ID_in_discreteDataType313); - SIGNED_INT15=(CommonTree)match(input,SIGNED_INT,FOLLOW_SIGNED_INT_in_discreteDataType315); - - match(input, Token.UP, null); - - theDataTypeSpec = DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode( (ID14!=null?ID14.getText():null), (SIGNED_INT15!=null?SIGNED_INT15.getText():null) ); - if( null == theDataTypeSpec ){ - // APG ERRORS: throw IAE - generateOncoError( (ID14!=null?ID14.getCharPositionInLine():0), (ID14!=null?ID14.getLine():0), (ID14!=null?ID14.getText():null) + " " + (SIGNED_INT15!=null?SIGNED_INT15.getText():null), - " is not a valid genetic data type and GISTIC code." ); - } - - - } - break; - - } - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return theDataTypeSpec; - } - // $ANTLR end "discreteDataType" - - - // $ANTLR start "floatOrInt" - // ../completeOncoPrintSpecASTwalker.g:206:1: floatOrInt returns [String number] : ( SIGNED_FLOAT | SIGNED_INT ); - public final String floatOrInt() throws RecognitionException { - String number = null; - - CommonTree SIGNED_FLOAT16=null; - CommonTree SIGNED_INT17=null; - - try { - // ../completeOncoPrintSpecASTwalker.g:207:2: ( SIGNED_FLOAT | SIGNED_INT ) - int alt9=2; - int LA9_0 = input.LA(1); - - if ( (LA9_0==SIGNED_FLOAT) ) { - alt9=1; - } - else if ( (LA9_0==SIGNED_INT) ) { - alt9=2; - } - else { - NoViableAltException nvae = - new NoViableAltException("", 9, 0, input); - - throw nvae; - } - switch (alt9) { - case 1 : - // ../completeOncoPrintSpecASTwalker.g:208:2: SIGNED_FLOAT - { - SIGNED_FLOAT16=(CommonTree)match(input,SIGNED_FLOAT,FOLLOW_SIGNED_FLOAT_in_floatOrInt337); - - number = (SIGNED_FLOAT16!=null?SIGNED_FLOAT16.getText():null); - - - } - break; - case 2 : - // ../completeOncoPrintSpecASTwalker.g:212:4: SIGNED_INT - { - SIGNED_INT17=(CommonTree)match(input,SIGNED_INT,FOLLOW_SIGNED_INT_in_floatOrInt346); - - number = (SIGNED_INT17!=null?SIGNED_INT17.getText():null); - - - } - break; - - } - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return number; - } - // $ANTLR end "floatOrInt" - - - // $ANTLR start "continuousDataTypeInequality" - // ../completeOncoPrintSpecASTwalker.g:218:1: continuousDataTypeInequality returns [ContinuousDataTypeSpec theContinuousDataTypeSpec] : ^( ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) ; - public final ContinuousDataTypeSpec continuousDataTypeInequality() throws RecognitionException { - ContinuousDataTypeSpec theContinuousDataTypeSpec = null; - - CommonTree ID18=null; - CommonTree COMPARISON_OP19=null; - String floatOrInt20 = null; - - - try { - // ../completeOncoPrintSpecASTwalker.g:219:2: ( ^( ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) ) - // ../completeOncoPrintSpecASTwalker.g:220:2: ^( ContinuousDataTypeInequality ID COMPARISON_OP floatOrInt ) - { - match(input,ContinuousDataTypeInequality,FOLLOW_ContinuousDataTypeInequality_in_continuousDataTypeInequality368); - - match(input, Token.DOWN, null); - ID18=(CommonTree)match(input,ID,FOLLOW_ID_in_continuousDataTypeInequality370); - COMPARISON_OP19=(CommonTree)match(input,COMPARISON_OP,FOLLOW_COMPARISON_OP_in_continuousDataTypeInequality372); - pushFollow(FOLLOW_floatOrInt_in_continuousDataTypeInequality374); - floatOrInt20=floatOrInt(); - - state._fsp--; - - - match(input, Token.UP, null); - - theContinuousDataTypeSpec = ContinuousDataTypeSpec.continuousDataTypeSpecGenerator( - (ID18!=null?ID18.getText():null), (COMPARISON_OP19!=null?COMPARISON_OP19.getText():null), floatOrInt20 ); - if( null == theContinuousDataTypeSpec ){ - generateOncoError( (ID18!=null?ID18.getCharPositionInLine():0), (ID18!=null?ID18.getLine():0), (ID18!=null?ID18.getText():null), " is not a valid genetic data type." ); - } - - - } - - } - - catch (RecognitionException re) { - // trees s/b all well-formed, so don't expect these - reportError(re); - recover(input,re); - } catch (OncoPrintLangException e) { - newReportError(e); - recover(input, null ); // recover doesn't use the RecognitionException, so null's OK - } - finally { - } - return theContinuousDataTypeSpec; - } - // $ANTLR end "continuousDataTypeInequality" - - // Delegated rules - - - - - public static final BitSet FOLLOW_userGeneList_in_oncoPrintSpecification62 = new BitSet(new long[]{0x00000000000001A2L}); - public static final BitSet FOLLOW_UserGeneList_in_userGeneList91 = new BitSet(new long[]{0x0000000000000004L}); - public static final BitSet FOLLOW_geneList_in_userGeneList93 = new BitSet(new long[]{0x0000000000000018L}); - public static final BitSet FOLLOW_STRING_in_userGeneList95 = new BitSet(new long[]{0x0000000000000008L}); - public static final BitSet FOLLOW_geneList_in_userGeneList106 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_individualGene_in_geneList132 = new BitSet(new long[]{0x00000000000001A2L}); - public static final BitSet FOLLOW_defaultDataTypeSpec_in_geneList140 = new BitSet(new long[]{0x00000000000001A2L}); - public static final BitSet FOLLOW_IndividualGene_in_individualGene161 = new BitSet(new long[]{0x0000000000000004L}); - public static final BitSet FOLLOW_ID_in_individualGene163 = new BitSet(new long[]{0x0000000000005208L}); - public static final BitSet FOLLOW_fullDataTypeSpec_in_individualGene165 = new BitSet(new long[]{0x0000000000000008L}); - public static final BitSet FOLLOW_DefaultDataTypeSpec_in_defaultDataTypeSpec185 = new BitSet(new long[]{0x0000000000000004L}); - public static final BitSet FOLLOW_fullDataTypeSpec_in_defaultDataTypeSpec187 = new BitSet(new long[]{0x0000000000000008L}); - public static final BitSet FOLLOW_dataTypeSpec_in_fullDataTypeSpec213 = new BitSet(new long[]{0x0000000000005202L}); - public static final BitSet FOLLOW_DataTypeOrLevel_in_dataTypeSpec242 = new BitSet(new long[]{0x0000000000000004L}); - public static final BitSet FOLLOW_ID_in_dataTypeSpec244 = new BitSet(new long[]{0x0000000000000008L}); - public static final BitSet FOLLOW_discreteDataType_in_dataTypeSpec255 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_continuousDataTypeInequality_in_dataTypeSpec264 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_DiscreteDataType_in_discreteDataType288 = new BitSet(new long[]{0x0000000000000004L}); - public static final BitSet FOLLOW_ID_in_discreteDataType292 = new BitSet(new long[]{0x0000000000000400L}); - public static final BitSet FOLLOW_COMPARISON_OP_in_discreteDataType294 = new BitSet(new long[]{0x0000000000000040L}); - public static final BitSet FOLLOW_ID_in_discreteDataType298 = new BitSet(new long[]{0x0000000000000008L}); - public static final BitSet FOLLOW_DiscreteDataType_in_discreteDataType311 = new BitSet(new long[]{0x0000000000000004L}); - public static final BitSet FOLLOW_ID_in_discreteDataType313 = new BitSet(new long[]{0x0000000000000800L}); - public static final BitSet FOLLOW_SIGNED_INT_in_discreteDataType315 = new BitSet(new long[]{0x0000000000000008L}); - public static final BitSet FOLLOW_SIGNED_FLOAT_in_floatOrInt337 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_SIGNED_INT_in_floatOrInt346 = new BitSet(new long[]{0x0000000000000002L}); - public static final BitSet FOLLOW_ContinuousDataTypeInequality_in_continuousDataTypeInequality368 = new BitSet(new long[]{0x0000000000000004L}); - public static final BitSet FOLLOW_ID_in_continuousDataTypeInequality370 = new BitSet(new long[]{0x0000000000000400L}); - public static final BitSet FOLLOW_COMPARISON_OP_in_continuousDataTypeInequality372 = new BitSet(new long[]{0x0000000000002800L}); - public static final BitSet FOLLOW_floatOrInt_in_continuousDataTypeInequality374 = new BitSet(new long[]{0x0000000000000008L}); - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecLanguage.g b/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecLanguage.g deleted file mode 100644 index 303f9d7e1e5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/completeOncoPrintSpecLanguage.g +++ /dev/null @@ -1,367 +0,0 @@ -grammar completeOncoPrintSpecLanguage; - -// Old implementation used before breaking OQL into a tree generator and a tree walker -// not in use - -@parser::header { - package main; - import java.util.ArrayList; - import org.mskcc.cbio.portal.oncoPrintSpecLanguage.*; - import static java.lang.System.out; -} -@lexer::header{ - package main; -} -@members{ - // create default, which can be replaced with 'DATATYPES' specs - ResultFullDataTypeSpec theDefaultResultFullDataTypeSpec = new ResultFullDataTypeSpec( ); - - String[] ruleNameToDataTypeNames = { - "geneName", "gene", - "dataTypeName", "genetic data type", - "dataTypeLevel", "genetic data level"}; - public String lookupDataTypeName( String ruleName ){ - for( int i = 0; i>" - // and "(decision="+nvae.decisionNumber+") and - // "state "+nvae.stateNumber - msg = "no viable alternative at input " + getTokenErrorDisplay(e.token); - } else if (e instanceof EarlyExitException) { - // EarlyExitException eee = (EarlyExitException)e; - // for development, can add "(decision="+eee.decisionNumber+")" - msg = "required (...)+ loop did not match anything at input " - + getTokenErrorDisplay(e.token); - } else if (e instanceof MismatchedSetException) { - MismatchedSetException mse = (MismatchedSetException) e; - msg = "mismatched input " + getTokenErrorDisplay(e.token) + " expecting set " - + mse.expecting; - } else if (e instanceof MismatchedNotSetException) { - MismatchedNotSetException mse = (MismatchedNotSetException) e; - msg = "mismatched input " + getTokenErrorDisplay(e.token) + " expecting set " - + mse.expecting; - } else if (e instanceof FailedPredicateException) { - FailedPredicateException fpe = (FailedPredicateException) e; - // msg = "rule " + fpe.ruleName + " failed predicate: {" + fpe.predicateText + "}?"; - msg = "token '" + e.token.getText() + "' is not a valid '" + lookupDataTypeName( fpe.ruleName ) +"'."; - } - return msg; - } - - /* -public String getErrorMessage(RecognitionException e, - String[] tokenNames){ - List stack = getRuleInvocationStack(e, this.getClass().getName()); - int charPos = e.charPositionInLine+1; - String rule = stack.get(0); - return " is not a valid " + e.getClass().getName() +" "+ rule + " at char " + charPos + " of line " + e.line; - // "X" is not a valid "Y" at line l, char c; valid "Y"s are "". - if( e isInstanceOf FailedPredicateException){ - } - -} - */ -} - -// everything is a groupedGeneList, including a gene by itself -oncoPrintSpecification returns [OncoPrintSpecification theOncoPrintSpecification] -@init{ - // ACTION: initialize default OncoPrintSpecification - $theOncoPrintSpecification = new OncoPrintSpecification( ); - theDefaultResultFullDataTypeSpec.setDefault(); -} - : - ( groupedGeneList - { - $theOncoPrintSpecification.add( $groupedGeneList.theGeneSet ); - } - )+ - ; - -groupedGeneList returns [GeneSet theGeneSet] - : - geneList - { - $theGeneSet = $geneList.theGeneSet; - } - // TODO: next phase - | '{' geneList '}' - { - $theGeneSet = $geneList.theGeneSet; - $theGeneSet.setUserGeneList(true); - } - // TODO: next phase - | STRING '{' geneList '}' - { - $theGeneSet = $geneList.theGeneSet; - $theGeneSet.setName( $STRING.text ); - } - ; - -geneList returns [GeneSet theGeneSet] -@init{ - $theGeneSet = new GeneSet(); -} - : - ( individualGene - { - // ACTION: add individualGene to G; - $theGeneSet.addGeneWithSpec( $individualGene.theGeneWithSpec ); - } - | defaultDataTypeSpec // nothing to do: defaultDataTypeSpec sets theDefaultResultFullDataTypeSpec - )+ - { // todo: ACTION: if G doesn't have any genes throw error - } - ; - -individualGene returns [GeneWithSpec theGeneWithSpec] - : - geneName - { - $theGeneWithSpec = new GeneWithSpec( $geneName.name ); - // copy the defaultDataTypeSpec to it - $theGeneWithSpec.setTheResultFullDataTypeSpec( theDefaultResultFullDataTypeSpec ); - } - ( fullDataTypeSpec - { - // ACTION: set dataTypeSpec for internalGeneWithSpec - $theGeneWithSpec.setTheResultFullDataTypeSpec( $fullDataTypeSpec.theParsedFullDataTypeSpec.cleanUpInput() ); - } - )? - ; - -geneNameOld returns [String name] - : ID - { - // ACTION: if the ID is a valid gene return ID else return null (Should we throw error?) - if( Gene.valid( $ID.text )){ - $name = $ID.text; - }else{ - $name = null; - } - } - ; - -geneName returns [String name] - : { Gene.valid( input.LT(1).getText() ) }? ID - // TODO: handle error when isDataTypeName fails - { $name = $ID.text; } - ; - -defaultDataTypeSpec returns [ResultFullDataTypeSpec theResultFullDataTypeSpec] - : 'DATATYPES' fullDataTypeSpec - { - // out.println( "in defaultDataTypeSpec, cleanUp "+ $fullDataTypeSpec.theParsedFullDataTypeSpec.toString() ); - $theResultFullDataTypeSpec = $fullDataTypeSpec.theParsedFullDataTypeSpec.cleanUpInput(); - // ACTION: reset the local defaultDataTypeSpec - theDefaultResultFullDataTypeSpec = $theResultFullDataTypeSpec; - } - ; - -fullDataTypeSpec returns [ParsedFullDataTypeSpec theParsedFullDataTypeSpec] -@init{ - $theParsedFullDataTypeSpec = new ParsedFullDataTypeSpec(); -} - : ':' ( dataTypeSpec - { - /* - out.print( "adding dataTypeSpec "); - if( $dataTypeSpec.theDataTypeSpec == null) { - out.println( "that's null "); - }else{ - out.println( $dataTypeSpec.theDataTypeSpec.toString() ); - } - */ - $theParsedFullDataTypeSpec.addSpec( $dataTypeSpec.theDataTypeSpec ); - } - )+ ';' - ; - -dataTypeSpec returns [DataTypeSpec theDataTypeSpec] - : - dataTypeName // may be discrete or continuous - { - $theDataTypeSpec = new ConcreteDataTypeSpec( $dataTypeName.text ); - } - | dataTypeLevel // must be discrete - { - $theDataTypeSpec = new DiscreteDataTypeSetSpec( $dataTypeLevel.text ); - } - | discreteDataType - { - $theDataTypeSpec = $discreteDataType.theDataTypeSpec; - } - | continuousDataTypeInterval - { - $theDataTypeSpec = $continuousDataTypeInterval.theContinuousDataTypeSpec; - } - ; - -discreteDataType returns [DataTypeSpec theDataTypeSpec] - : - // ( comparisonOP dataTypeLevel ) | confuses next alternative with 'dataTypeName' 'comparisonOP dataTypeLevel' - ( dataTypeName comparisonOP dataTypeLevel - { - $theDataTypeSpec = new DiscreteDataTypeSpec( - DiscreteDataTypeSpec.findDataType( $dataTypeName.text ), - $comparisonOP.theComparisonOp, - GeneticTypeLevel.findDataTypeLevel( $dataTypeLevel.text ) ); - } - ) | - ( dataTypeName SIGNED_INT ) - { - $theDataTypeSpec = new DiscreteDataTypeSetSpec( - $dataTypeName.text, Integer.parseInt( $SIGNED_INT.text ) ); - } - ; - -// TODO: rename to continuousDataTypeInequality -continuousDataTypeInterval returns [ContinuousDataTypeSpec theContinuousDataTypeSpec] - : - { - float threshold = 0.0f; - } - ( dataTypeName comparisonOP - ( SIGNED_INT { threshold = (float) Integer.parseInt( $SIGNED_INT.text);} - | SIGNED_FLOAT { threshold = Float.parseFloat( $SIGNED_FLOAT.text);} - ) ) - { - $theContinuousDataTypeSpec = new ContinuousDataTypeSpec( - ContinuousDataTypeSpec.findDataType( $dataTypeName.text ), - $comparisonOP.theComparisonOp, threshold ); - } - ; - -dataTypeName returns [String text] - : { DataTypeSpecEnumerations.isDataTypeName( input.LT(1).getText() ) }? - ID // was - // { DataTypeSpecEnumerations.isDataTypeName( $ID.text ) }? - // TODO: handle error when isDataTypeName fails - { $text = $ID.text; } - ; - -dataTypeLevel returns [String text] - : - // don't want this hoisted - { DataTypeSpecEnumerations.isDataTypeLevel( input.LT(1).getText() ) }? - ID - // { DataTypeSpecEnumerations.isDataTypeLevel( $ID.text ) }? - // TODO: handle error when isDataTypeLevel fails - { $text = $ID.text; } - ; - -comparisonOP returns [ComparisonOp theComparisonOp ] - : COMPARISON_OP - { - // ACTION: convert to enumeration - $theComparisonOp = ComparisonOp.convertCode( $COMPARISON_OP.text ); - } - ; - -COMPARISON_OP - // awkward to convert to enumeration in COMPARISON_OP cuz of char / text distinction for 1/longer tokens; see bottom p. 139 T. Parr - : ( '<=' | '<' | '>' | '>=' ) - ; - -ID : ('a'..'z'|'A'..'Z'|'_') ('a'..'z'|'A'..'Z'|'0'..'9'|'_')* - ; - -SIGNED_INT : ('-')? '0'..'9'+ ; - -SIGNED_FLOAT - : ('-')? ( ('0'..'9')+ '.' ('0'..'9')* - | '.' ('0'..'9')+ - | ('0'..'9')+ ) - ; - -WS : ( ' ' - | '\t' - | '\r' - | '\n' - ) {$channel=HIDDEN;} - ; - -STRING - : '"' ( ESC_SEQ | ~('\\'|'"') )* '"' - ; - -fragment -ESC_SEQ - : '\\' ('b'|'t'|'n'|'f'|'r'|'\"'|'\''|'\\') - | UNICODE_ESC - | OCTAL_ESC - ; - -fragment -OCTAL_ESC - : '\\' ('0'..'3') ('0'..'7') ('0'..'7') - | '\\' ('0'..'7') ('0'..'7') - | '\\' ('0'..'7') - ; - -fragment -UNICODE_ESC - : '\\' 'u' HEX_DIGIT HEX_DIGIT HEX_DIGIT HEX_DIGIT - ; - -fragment -HEX_DIGIT : ('0'..'9'|'a'..'f'|'A'..'F') ; diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/AddCaseList.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/AddCaseList.java deleted file mode 100644 index acc067c640e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/AddCaseList.java +++ /dev/null @@ -1,172 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.util.ArrayList; -import java.util.List; - -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoSample; -import org.mskcc.cbio.portal.dao.DaoSampleList; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.model.SampleList; -import org.mskcc.cbio.portal.model.SampleListCategory; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.mskcc.cbio.portal.util.SpringUtil; - -/** - * Command Line tool to Add new case lists by generating them based on some rules. - */ -public class AddCaseList extends ConsoleRunnable { - - - /** - * Add case list of type "all" - * - * @param theCancerStudy - * @param pMonitor - * @throws Exception - */ - private static void addAllCasesList(CancerStudy theCancerStudy) throws Exception { - String cancerStudyIdentifier = theCancerStudy.getCancerStudyStableId(); - String stableId = cancerStudyIdentifier + "_all"; - ProgressMonitor.setCurrentMessage("Adding case list: " + stableId + "..."); - - String sampleListCategoryStr = "other"; //TODO : check if this is important... - SampleListCategory sampleListCategory = SampleListCategory.get(sampleListCategoryStr); - - String sampleListDescription = "All cases in study"; - String sampleListName = sampleListDescription; - - // construct sample id list - ArrayList sampleIDsList = new ArrayList(); - - List sampleIds = DaoSample.getSampleStableIdsByCancerStudy(theCancerStudy.getInternalId()); - for (String sampleId : sampleIds) { - Sample s = DaoSample.getSampleByCancerStudyAndSampleId(theCancerStudy.getInternalId(), sampleId); - sampleIDsList.add(s.getStableId()); - } - addCaseList(stableId, theCancerStudy, sampleListCategory, sampleListName, sampleListDescription, sampleIDsList); - } - - /** - * Generic method to add a case list - * - * @param stableId - * @param theCancerStudy - * @param sampleListCategory - * @param sampleListName - * @param sampleListDescription - * @param sampleIDsList - * @param pMonitor - * @throws Exception - */ - private static void addCaseList(String stableId, CancerStudy theCancerStudy, - SampleListCategory sampleListCategory, String sampleListName, String sampleListDescription, - ArrayList sampleIDsList) throws Exception { - - DaoSampleList daoSampleList = new DaoSampleList(); - SampleList sampleList = daoSampleList.getSampleListByStableId(stableId); - if (sampleList != null) { - ProgressMonitor.logWarning("Case list with this stable Id already exists: " + stableId + ". Will keep the existing one."); - } - else { - sampleList = new SampleList(); - sampleList.setStableId(stableId); - int cancerStudyId = theCancerStudy.getInternalId(); - sampleList.setCancerStudyId(cancerStudyId); - sampleList.setSampleListCategory(sampleListCategory); - sampleList.setName(sampleListName); - sampleList.setDescription(sampleListDescription); - sampleList.setSampleList(sampleIDsList); - daoSampleList.addSampleList(sampleList); - - sampleList = daoSampleList.getSampleListByStableId(stableId); - - ProgressMonitor.setCurrentMessage(" --> stable ID: " + sampleList.getStableId()); - ProgressMonitor.setCurrentMessage(" --> case list name: " + sampleList.getName()); - ProgressMonitor.setCurrentMessage(" --> number of cases: " + sampleIDsList.size()); - } - } - - public void run() { - try { - // check args - String progName = "addCaseList.pl"; - String argSpec = " "; - if (this.args.length < 2) { - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - throw new UsageException( - progName, - null, - argSpec); - } - - String cancerStudyIdentifier = args[0]; - String caseListType = args[1]; - if (cancerStudyIdentifier == null) { - throw new UsageException(progName, null, argSpec, - "cancer_study_identifier is not specified."); - } - SpringUtil.initDataSource(); - CancerStudy theCancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - if (theCancerStudy == null) { - throw new IllegalArgumentException("cancer study identified by cancer_study_identifier '" - + cancerStudyIdentifier + "' not found in dbms or inaccessible to user."); - } - - if (caseListType.equals("all")) { - //Add "all" case list: - AddCaseList.addAllCasesList(theCancerStudy); - } - } - catch (RuntimeException e) { - throw e; - } - catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public AddCaseList(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new AddCaseList(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/CalculateMutationFrequencies.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/CalculateMutationFrequencies.java deleted file mode 100644 index 0f1931c8bca..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/CalculateMutationFrequencies.java +++ /dev/null @@ -1,143 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.*; - -import java.util.*; -import java.text.DecimalFormat; - -/** - * Calculates Mutation Frequencies. - */ -public class CalculateMutationFrequencies { - - public static void main(String[] args) throws Exception { - HashMap > mutationMap = new HashMap>(); - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - - if (args.length < 2) { - System.out.println ("You must specify a stable case set id and stable cancer study id."); - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - return; - } - - String sampleSetName = args[0]; - DaoSampleList daoSampleList = new DaoSampleList(); - SampleList sampleSet = daoSampleList.getSampleListByStableId(sampleSetName); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(args[1]); - HashSet masterSampleSet = new HashSet(); - // NOTE - as of 12/12/14, patient lists contain sample ids - masterSampleSet.addAll(InternalIdUtil.getInternalNonNormalSampleIds(cancerStudy.getInternalId(), sampleSet.getSampleList())); - - if (sampleSet == null) { - System.out.println ("Patient set id: " + sampleSetName + " does not exist in database."); - return; - } - - ProgressMonitor.setCurrentMessage("Using patient set: " + sampleSet.getName()); - ProgressMonitor.setCurrentMessage("Number of patients: " + sampleSet.getSampleList().size()); - - // Delete all Existing Mutation Frequency Records - ProgressMonitor.setCurrentMessage("Deleting all existing mutation frequency records"); - - // Get all mutations - ArrayList mutationList = DaoMutation.getAllMutations(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - ProgressMonitor.setCurrentMessage("Getting All Mutations..."); - // Iterate through all mutation records - for (ExtendedMutation mutation: mutationList) { - long entrezGeneId = mutation.getEntrezGeneId(); - CanonicalGene gene = daoGene.getGene(entrezGeneId); - - // Only count the mutation if it's in the selected case set, - // and it's somatic. - if (masterSampleSet.contains(mutation.getSampleId())) { - if (mutation.getMutationStatus().equalsIgnoreCase("SOMATIC") - || mutation.getMutationStatus().equalsIgnoreCase("UNKNOWN")) { - // Store in mutation map - if (mutationMap.containsKey(gene)) { - HashSet mutationCaseSet = mutationMap.get(gene); - mutationCaseSet.add(mutation.getSampleId()); - } else { - HashSet mutationCaseSet = new HashSet (); - mutationCaseSet.add(mutation.getSampleId()); - mutationMap.put(gene, mutationCaseSet); - } - } - } - } - - ArrayList geneList = new ArrayList (); - for (CanonicalGene gene: mutationMap.keySet()) { - HashSet mutationCaseSet = mutationMap.get(gene); - gene.setSomaticMutationFrequency(mutationCaseSet.size() / (double) sampleSet.getSampleList().size()); - geneList.add(gene); - } - Collections.sort(geneList, new SingleGeneComparator()); - - ProgressMonitor.setCurrentMessage("Here are all genes mutated > 4%:"); - DecimalFormat formatter = new DecimalFormat("#,###,###.###"); - - for (int i=0; i< geneList.size(); i++) { - CanonicalGene gene = geneList.get(i); - if (gene.getSomaticMutationFrequency() > .01) { - System.out.println (gene.getHugoGeneSymbolAllCaps() + "\t" - + formatter.format(gene.getSomaticMutationFrequency())); - } - } - - ProgressMonitor.setCurrentMessage("Storing results to database."); - for (int i=0; i gene2.getSomaticMutationFrequency()) { - return -1; - } else { - return +1; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConsoleRunnable.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ConsoleRunnable.java deleted file mode 100644 index 0ce5e15e3d4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConsoleRunnable.java +++ /dev/null @@ -1,165 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - * - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.scripts; - -import java.io.IOException; -import java.util.Date; - -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -/** - * A superclass for procedures runnable as a command-line script. - * - * This keeps the procedure logic in {@link #run()} clean of the - * command line-specific functionality added by {@link #runInConsole()}, - * such as exiting the JVM process with a usage message and exit status code. - * - * @see {@link UsageException} - */ -public abstract class ConsoleRunnable implements Runnable { - - /** - * Standard Unix exit codes from sysexits.h. - * - * @see - * The (Free)BSD man page for sysexits(3) - * - */ - private enum SysExit { - EX_OK ( 0), // successful termination - EX_USAGE (64), // command line usage error - EX_DATAERR (65), // data format error - EX_NOINPUT (66), // cannot open input - EX_NOUSER (67), // addressee unknown - EX_NOHOST (68), // host name unknown - EX_UNAVAILABLE (69), // service unavailable - EX_SOFTWARE (70), // internal software error - EX_OSERR (71), // system error (e.g., can't fork) - EX_OSFILE (72), // critical OS file missing - EX_CANTCREAT (73), // can't create (user) output file - EX_IOERR (74), // input/output error - EX_TEMPFAIL (75), // temp failure; user is invited to retry - EX_PROTOCOL (76), // remote error in protocol - EX_NOPERM (77), // permission denied - EX_CONFIG (78); // configuration error - - private final int statusCode; - - /** - * Instantiates an exit status symbol for a numeric code. - * - * @param statusCode the exit status code - */ - private SysExit(int statusCode) { - this.statusCode = statusCode; - } - - /** - * Gets the numeric value of the exit status. - * - * @return the exit status code - */ - public int getStatusCode() { - return statusCode; - } - - /** - * Selects an appropriate exit status symbol to reflect an exception. - * - * @param t the exception or error to base the exit status on - */ - public static SysExit select(Throwable t) { - Class exceptionClass; - // if this is an uninformative RuntimeException packing another - // cause, use the class of the cause to determine exit status - if (t.getClass() == RuntimeException.class && - t.getCause() != null && - (t.getMessage() == null || - t.getMessage().equals(t.getCause().toString()))) { - exceptionClass = t.getCause().getClass(); - } else { - exceptionClass = t.getClass(); - } - // Select an appropriate exit status for this class of throwable - if (IllegalArgumentException.class.isAssignableFrom(exceptionClass) || - exceptionClass.equals(RuntimeException.class)) { - // These are usually thrown because of input data errors - return EX_DATAERR; - } else if (IOException.class.isAssignableFrom(exceptionClass)) { - return EX_IOERR; - } else { - return EX_SOFTWARE; - } - } - } - - /** - * the command line arguments to be used by the {@link #run()} method - */ - protected String[] args; - - /** - * Instantiates a ConsoleRunnable to run with the given command line args. - * - * @param args the command line arguments to be used - * @see {@link #run()} - */ - public ConsoleRunnable(String[] args) { - this.args = args; - } - - /** - * Performs the functionality of the script not specific to console usage. - */ - @Override - public abstract void run(); - - /** - * Runs the command as a script and exits with an appropriate exit code. - */ - public void runInConsole() { - SysExit status; - try { - Date start = new Date(); - ProgressMonitor.setConsoleModeAndParseShowProgress(this.args); - this.run(); - ConsoleUtil.showMessages(); - System.err.println("Done."); - Date end = new Date(); - long totalTime = end.getTime() - start.getTime(); - System.err.println ("Total time: " + totalTime + " ms\n"); - status = SysExit.EX_OK; - } - catch (UsageException e) { - e.printUsageLine(); - status = SysExit.EX_USAGE; - } - catch (Throwable t) { - ConsoleUtil.showWarnings(); - System.err.println ("\nABORTED!"); - t.printStackTrace(); - status = SysExit.select(t); - } - System.exit(status.getStatusCode()); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertCosmicVcfToMaf.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertCosmicVcfToMaf.java deleted file mode 100644 index 470a06e92e9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertCosmicVcfToMaf.java +++ /dev/null @@ -1,124 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.FileUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.File; -import java.io.FileReader; -import java.io.FileWriter; -import java.io.IOException; - -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -public class ConvertCosmicVcfToMaf { - private File vcf, maf; - - public ConvertCosmicVcfToMaf(File vcf, File maf) { - this.vcf = vcf; - this.maf = maf; - } - - public void convert() throws IOException { - Pattern p = Pattern.compile(".+;CNT=([0-9]+)"); - FileWriter writer = new FileWriter(maf); - BufferedWriter bufWriter = new BufferedWriter(writer); - bufWriter.append("COSMIC_ID\tCOSMIC_COUNT\tChromosome\tStart_Position\tEnd_Position\t" - + "Reference_Allele\tTumor_Seq_Allele1\tTumor_Seq_Allele2\tNCBI_Build\tCOSMIC_Info\n"); - - FileReader reader = new FileReader(vcf); - BufferedReader buf = new BufferedReader(reader); - String line; - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#")) { - String parts[] = line.split("\t",-1); - if (parts.length<8) { - System.err.println("Wrong line in cosmic: "+line); - continue; - } - - String info = parts[7]; - Matcher m = p.matcher(info); - if (m.find()) { - String id = parts[2]; - String count = m.group(1); - String chr = parts[0]; - long start = Long.parseLong(parts[1]); - String ref = parts[3]; - String alt = parts[4].equals(".")?"-":parts[4]; - long end = start + ref.length() -1; - - bufWriter.append(id).append("\t") - .append(count).append("\t") - .append(chr).append("\t") - .append(Long.toString(start)).append("\t") - .append(Long.toString(end)).append("\t") - .append(ref).append("\t") - .append(alt).append("\t") - .append(alt).append("\t") - .append("37\t") - .append(info) - .append("\n"); - } - } - } - buf.close(); - bufWriter.close(); - } - - public static void main(String[] args) throws Exception { - if (args.length < 2) { - System.out.println("command line usage: importCosmicData.pl "); - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - return; - } - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - - File vcf = new File(args[0]); - System.out.println("Reading data from: " + vcf.getAbsolutePath()); - int numLines = FileUtil.getNumLines(vcf); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ConvertCosmicVcfToMaf parser = new ConvertCosmicVcfToMaf(vcf, new File(args[1])); - parser.convert(); - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertGeneIds.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertGeneIds.java deleted file mode 100644 index e1313f16f00..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertGeneIds.java +++ /dev/null @@ -1,73 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.io.BufferedReader; -import java.io.FileReader; -import java.io.File; -import java.io.IOException; - -/** - * Command Line Tool to Convert Gene IDs. - */ -public class ConvertGeneIds { - - public static void convertGeneIds(File file, String goCategory) throws IOException, DaoException { - BufferedReader buf = new BufferedReader (new FileReader(file)); - String line = buf.readLine(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - System.out.println ("GO_CATEGORY"); - while (line != null) { - line = line.trim(); - CanonicalGene canonicalGene = daoGene.getNonAmbiguousGene(line); - if (canonicalGene != null) { - System.out.println (canonicalGene.getHugoGeneSymbolAllCaps() + " = " + goCategory); - } - line = buf.readLine(); - } - } - - public static void main(String[] args) throws Exception { - if (args.length< 2) { - System.out.println ("command line usage: convertGeneIds.pl file_name attribute_name"); - return; - } - String file = args[0]; - String attribute = args[1]; - convertGeneIds(new File (file), attribute); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertGeneSymbols.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertGeneSymbols.java deleted file mode 100644 index 529cef3233c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertGeneSymbols.java +++ /dev/null @@ -1,72 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.io.BufferedReader; -import java.io.FileReader; -import java.io.IOException; -import java.util.List; - -/** - * Given a list of Genes in a File (specified as Gene Symbols or Aliases), - * convert these genes to Standard HUGO Gene Symbols that the Portal understands. - * - * @author Ethan Cerami. - */ -public class ConvertGeneSymbols { - - public static void main(String[] args) throws DaoException, IOException { - if (args.length < 1) { - System.out.println("command line usage: updateGeneSymbols.pl " + ""); - return; - } - String fileName = args[0]; - FileReader reader = new FileReader(fileName); - BufferedReader bufferedReader = new BufferedReader(reader); - String line = bufferedReader.readLine(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - while (line != null) { - String geneId = line.trim(); - List geneList = daoGene.guessGene(geneId); - if (geneList != null && geneList.size() == 1) { - CanonicalGene gene = geneList.get(0); - System.out.println(gene.getHugoGeneSymbolAllCaps()); - } - line = bufferedReader.readLine(); - } - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertSvsImages.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertSvsImages.java deleted file mode 100644 index 093c011a0fe..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ConvertSvsImages.java +++ /dev/null @@ -1,72 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -//import loci.formats.FormatTools; -//import loci.formats.in.SVSReader; -//import loci.formats.out.JPEGWriter; - -/** - * - * @author jgao - */ -public class ConvertSvsImages { -// public static void main(String[] args) { -// if (args.length<1) { -// System.err.println("specify at least the input file"); -// } -// -// String svs = args[0]; -// String ext = ".jpg"; -// -// SVSReader svsReader = new SVSReader(); -// -// try { -// svsReader.setId(svs); -// int nSeries = svsReader.getSeriesCount(); -// System.out.println(nSeries+" series in this SVS file"); -// -// for (int i=1; i<=nSeries; i++) { -// System.out.println("Convert images series "+i); -// svsReader.setSeries(i); -// String out = svs.replace(".svs", "")+".series"+i+ext; -// JPEGWriter writer = new JPEGWriter(); -// FormatTools.convert(svsReader, writer, out); -// writer.close(); -// } -// svsReader.close(); -// } catch (Exception ex) { -// ex.printStackTrace(); -// } -// } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/CutInvalidCases.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/CutInvalidCases.java deleted file mode 100644 index df1a1ce35fc..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/CutInvalidCases.java +++ /dev/null @@ -1,143 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.FileUtil; -import org.mskcc.cbio.portal.dao.*; - -import java.io.File; -import java.io.IOException; -import java.io.FileReader; -import java.io.BufferedReader; -import java.util.HashSet; - -/** - * Command Line Tool to Remove Exclused Cases. - */ -public class CutInvalidCases { - - private File caseExclusionFile; - private File dataFile; - - public CutInvalidCases(File caseExclusionFile, File dataFile) { - this.caseExclusionFile = caseExclusionFile; - this.dataFile = dataFile; - } - - public String process() throws IOException, DaoException { - StringBuffer revisedText = new StringBuffer(); - HashSet excludedCaseSet = getExcludedCases(); - FileReader reader = new FileReader(dataFile); - BufferedReader buf = new BufferedReader(reader); - String headerLine = buf.readLine(); - String parts[] = headerLine.split("\t"); - boolean includeColumn[] = new boolean [parts.length]; - - // Mark all columns for inclusion / exclusion - ProgressMonitor.setCurrentMessage("Total number of columns to process: " + parts.length); - for (int i = 0; i < parts.length; i++) { - String colHeading = parts[i].trim(); - if (excludedCaseSet.contains(colHeading)) { - includeColumn[i] = false; - ProgressMonitor.setCurrentMessage ("Marking for exclusion, col #" + i - + ", Case ID: " + colHeading); - } else { - includeColumn[i] = true; - revisedText.append(colHeading); - if (i < parts.length-1) { - revisedText.append ("\t"); - } - } - } - revisedText.append("\n"); - - String line = buf.readLine(); - while (line != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - parts = line.split("\t"); - for (int i=0; i 0) { - String parts[] = line.split("\t"); - excludedCaseSet.add(parts[0]); - } - line = buf.readLine(); - } - return excludedCaseSet; - } - - public static void main(String[] args) throws Exception { - if (args.length < 2) { - System.out.println("command line usage: cutInvalidCases.pl " + - " "); - return; - } - - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - File casesExcludedFile = new File (args[0]); - File dataFile = new File(args[1]); - - - System.err.println("Reading data from: " + dataFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(dataFile); - ProgressMonitor.setMaxValue(numLines); - CutInvalidCases parser = new CutInvalidCases(casesExcludedFile, - dataFile); - String out = parser.process(); - System.out.print (out); - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/DeleteAllSampleLists.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/DeleteAllSampleLists.java deleted file mode 100644 index bc3223eb8e0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/DeleteAllSampleLists.java +++ /dev/null @@ -1,52 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.DaoSampleList; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -/** - * Command Line Tool to Delete All Sample Lists. - */ -public class DeleteAllSampleLists { - - public static void main(String[] args) throws Exception { - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - DaoSampleList daoSampleList = new DaoSampleList(); - daoSampleList.deleteAllRecords(); - System.out.println ("\nAll Existing Sample Lists Deleted."); - ConsoleUtil.showWarnings(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/DumpPortalInfo.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/DumpPortalInfo.java deleted file mode 100644 index 9bae5b54617..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/DumpPortalInfo.java +++ /dev/null @@ -1,194 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - * - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.cbioportal.service.GenesetService; -import org.cbioportal.service.GenePanelService; -import org.cbioportal.web.config.CustomObjectMapper; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.core.JsonProcessingException; - -import java.io.*; -import java.util.*; - -/** - * Command line tool to generate JSON files used by the validation script. - */ -public class DumpPortalInfo extends ConsoleRunnable { - - // these names are defined in annotations to the methods of ApiController, - // in org.mskcc.cbio.portal.web - private static final String API_CANCER_TYPES = "/cancer-types"; - private static final String API_GENES = "/genes"; - private static final String API_GENE_ALIASES = "/genesaliases"; - private static final String API_GENESETS = "/genesets"; - private static final String API_GENESET_VERSION = "/genesets/version"; - private static final String API_GENE_PANELS = "/gene-panels"; - private static final int MAX_PAGE_SIZE = 10000000; - private static final int MIN_PAGE_NUMBER = 0; - - static class GeneAlias implements Serializable { - public String alias; - public String entrezGeneId; - } - - private static List extractGeneAliases(List canonicalGenes) { - List toReturn = new ArrayList(); - for (CanonicalGene canonicalGene : canonicalGenes) { - String entrezGeneId = String.valueOf(canonicalGene.getEntrezGeneId()); - for (String alias : canonicalGene.getAliases()) { - GeneAlias geneAlias = new GeneAlias(); - geneAlias.alias = alias; - geneAlias.entrezGeneId = entrezGeneId; - toReturn.add(geneAlias); - } - } - return toReturn; - } - - private static File nameJsonFile(File dirName, String apiName) { - // Determine the first alphabetic character - int i; - for ( - i = 0; - !Character.isLetter(apiName.charAt(i)); - i++) {} - // make a string without the initial non-alphanumeric characters - String fileName = apiName.substring(i).replace('/', '_') + ".json"; - return new File(dirName, fileName); - } - - private static void writeJsonFile( - List objectList, - File outputFile) throws IOException { - ObjectMapper mapper = new CustomObjectMapper(); - try { - mapper.writeValue(outputFile, objectList); - } catch (JsonProcessingException e) { - throw new RuntimeException( - "Error converting API data to JSON file: " + - e.toString(), - e); - } - } - - public void run() { - try { - // check args - if (args.length != 1 || - args[0].equals("-h") || args[0].equals("--help")) { - throw new UsageException( - "dumpPortalInfo.pl", - "Generate a folder of files describing the portal " + - "configuration.\n" + - "\n" + - "This is a subset of the information provided " + - "by the web API,\n" + - "intended for offline use of the validation " + - "script for study data.", - ""); - } - String outputDirName = args[0]; - ProgressMonitor.setCurrentMessage( - "Writing portal info files to directory '" + - outputDirName + "'...\n"); - - // initialize application context, including database connection - SpringUtil.initDataSource(); - GenesetService genesetService = SpringUtil.getApplicationContext().getBean( - GenesetService.class); - GenePanelService genePanelService = SpringUtil.getApplicationContext().getBean( - GenePanelService.class); - - File outputDir = new File(outputDirName); - // this will do nothing if the directory already exists: - // the files will simply be overwritten - outputDir.mkdir(); - if (!outputDir.isDirectory()) { - throw new IOException( - "Could not create directory '" + - outputDir.getPath() + "'"); - } - - try { - writeJsonFile( - DaoTypeOfCancer.getAllTypesOfCancer(), - nameJsonFile(outputDir, API_CANCER_TYPES)); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - List allGenes = daoGeneOptimized.getAllGenes(); - writeJsonFile( - allGenes, - nameJsonFile(outputDir, API_GENES)); - writeJsonFile( - extractGeneAliases(allGenes), - nameJsonFile(outputDir, API_GENE_ALIASES)); - writeJsonFile( - genesetService.getAllGenesets("SUMMARY", MAX_PAGE_SIZE, MIN_PAGE_NUMBER), - nameJsonFile(outputDir, API_GENESETS)); - writeJsonFile( - Arrays.asList(genesetService.getGenesetVersion()), - nameJsonFile(outputDir, API_GENESET_VERSION)); - writeJsonFile( - genePanelService.getAllGenePanels("DETAILED", MAX_PAGE_SIZE, MIN_PAGE_NUMBER, null, "ASC"), - nameJsonFile(outputDir, API_GENE_PANELS)); - } catch (DaoException e) { - throw new RuntimeException(e); - } catch (IOException e) { - throw new IOException( - "Error writing portal info file: " + e.toString(), - e); - } - } - catch (RuntimeException e) { - throw e; - } - catch (IOException e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public DumpPortalInfo(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new DumpPortalInfo(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ExportDataForDownload.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ExportDataForDownload.java deleted file mode 100644 index 23569f1fa7d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ExportDataForDownload.java +++ /dev/null @@ -1,297 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import java.io.*; -import java.text.*; -import java.util.*; -import joptsimple.*; - -/** - * Export all profile data to tsv files suitable for downloading. - * Also produce html index to the exported files. - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class ExportDataForDownload { - static final String NOT_AVAILABLE = "NA"; - static final String TABBED_FILE_SUFFIX = ".tsv"; - - private static String usageLine; - private static OptionParser parser; - - private static void quit(String msg){ - if( null != msg ){ - System.err.println( msg ); - } - System.err.println( usageLine ); - try { - parser.printHelpOn(System.err); - } catch (IOException e) { - e.printStackTrace(); - } - } - - public static void main(String[] args) { - - usageLine = "command line usage for ExportProfileData:"; - - parser = new OptionParser(); - parser.accepts("noprogress"); - OptionSpec htmlIndexFile = parser.accepts( "htmlIndexFile", "output file to store html " + - "index of files produced" ). - withRequiredArg().describedAs( "htmlIndexFile" ).ofType( String.class ); - OptionSpec directory = parser.accepts( "directory", "directory to hold download files produced" ). - withRequiredArg().describedAs( "directory" ).ofType( String.class ); - OptionSpec baseURL = parser.accepts( "baseURL", "base for html links" ).withRequiredArg(). - describedAs( "baseURL" ).ofType( String.class ); - - OptionSet options = null; - try { - options = parser.parse( args ); - } catch (OptionException e) { - quit( e.getMessage() ); - } - - if( !options.has( baseURL ) || !options.has( directory ) || !options.has( htmlIndexFile ) ){ - quit( "All arguments required."); - } - - // TODO: maybe write markdown instead of html - // TODO: export extended mutations; clinical; if in this class, rename it - // TODO: write targz of all files for each cancer - // TODO: split miRNA and mRNA - // TODO: *.seg files - generateExportProfileData( options.valueOf( htmlIndexFile ), - options.valueOf( directory ), - options.valueOf( baseURL ) ); - } - - /** - * Export all profile data to downloadable *.tsv files. - * Files are stored in directory. - * Write an HTML directory of the files into htmlIndexFile. - * - */ - public static void generateExportProfileData( String htmlIndexFile, String directory, String baseURL ){ - - /* - * get all cancer types - * for each cancer type, get all profiles - * filename = cancer.name + profile.name - * for each profile, get all cases - * print header row - * for each profile, get all genes - * for each gene, get all values - * print gene and values - */ - - long beginning = System.currentTimeMillis(); - try { - - FileWriter outFile = new FileWriter( htmlIndexFile ); - PrintWriter htmlIndexFilePrintWriter = new PrintWriter(outFile); - - DaoGeneOptimized aDaoGene = DaoGeneOptimized.getInstance(); - ArrayList allGenes = aDaoGene.getAllGenes(); - // map from EntrezID to HugoSymbol, so we don't have to look up each one - // TODO: measure how much time this saves, if any - HashMap geneSymbolMap = new HashMap(); - for( CanonicalGene aCanonicalGene : allGenes ){ - geneSymbolMap.put( aCanonicalGene.getEntrezGeneId(), aCanonicalGene.getHugoGeneSymbolAllCaps() ); - } - - ArrayList theCancerStudies = DaoCancerStudy.getAllCancerStudies(); - htmlIndexFilePrintWriter.print( "

    " ); - - for( CancerStudy aCancerStudy : theCancerStudies ){ - - System.out.println( "\nProcessing " + aCancerStudy.getName() + "\n" ); - - htmlIndexFilePrintWriter.print( "
  • " + aCancerStudy.getName() + "
    • \n" ); - - ArrayList theGeneticProfiles = - DaoGeneticProfile.getAllGeneticProfiles( aCancerStudy.getInternalId() ); - htmlIndexFilePrintWriter.print( "
      " ); - - // for each of this cancer's genetic profiles - for( GeneticProfile aGeneticProfile : theGeneticProfiles ){ - - StringBuffer monitorOutput = new StringBuffer(); - monitorOutput.append( "\tProcessing " + aGeneticProfile.getProfileName() ); - - ArrayList internalSampleIds = - DaoSampleProfile.getAllSampleIdsInProfile( aGeneticProfile.getGeneticProfileId() ); - - // don't write empty files - if( 0 == internalSampleIds.size() ){ - monitorOutput.append( "\tNo samples ... skipping.\n" ); - System.out.println( monitorOutput.toString() ); - continue; - } - monitorOutput.append( ", with " + internalSampleIds.size() + " cases" ); - - // TODO: The code below needs to be updated to get genes in each type of profile - ArrayList< Long > theGenes = null; - - // don't write empty files - if( 0 == theGenes.size() ){ - monitorOutput.append( "\tNo genes ... skipping.\n" ); - System.out.println( monitorOutput.toString() ); - continue; - } - monitorOutput.append( " and " + theGenes.size() + " genes.\n" ); - - long start = System.currentTimeMillis(); - - String filename = aGeneticProfile.getStableId() + TABBED_FILE_SUFFIX; - String pathname = directory + "/" + filename; - FileWriter outDownloadFile = new FileWriter( pathname ); - PrintWriter out = new PrintWriter( outDownloadFile ); - - // link to baseURL + filename - htmlIndexFilePrintWriter.print( "
    • " + - aGeneticProfile.getProfileName() + "
      • \n" ); - - // TODO: write metadata row: # date generated, cgds dbms source, documentation of data encoding, - DateFormat dateFormat = new SimpleDateFormat("yyyy/MM/dd HH:mm:ss"); - Date date = new Date(); - out.println( "# " + dateFormat.format(date) + ", cgds dbms source, documentation of " + - "data encoding, etc."); - - // write header row - out.print( "Hugo Gene Symbol\tGene ID"); - for(Integer sampleId : internalSampleIds){ - Sample s = DaoSample.getSampleById(sampleId); - out.print( "\t" + s.getStableId()); - } - out.println( ); - - DaoGeneticAlteration aDaoGeneticAlteration = DaoGeneticAlteration.getInstance(); - int genesWithoutSymbols = 0; - for( Long aGeneID : theGenes ){ - HashMap theGeneticAlterationMap = - aDaoGeneticAlteration.getGeneticAlterationMap( aGeneticProfile.getGeneticProfileId(), - aGeneID.longValue() ); - - // output gene symbol and ID - String geneSymbol = geneSymbolMap.get(aGeneID); - if( null == geneSymbol ){ - out.print( "---" ); // TODO: what should be done if a gene doesn't have a symbol? - genesWithoutSymbols++; - }else{ - out.print( geneSymbol ); - } - out.print( "\t" + aGeneID.longValue() ); - - // output data - for(Integer sampleId : internalSampleIds){ - String value = theGeneticAlterationMap.get(sampleId); - out.print( "\t" ); - if( null == value ){ - out.print(NOT_AVAILABLE); - }else{ - out.print( value ); - } - } - out.println( ); - } - - out.close(); - if( 0 < genesWithoutSymbols ){ - monitorOutput.append( "\tWarning: " + genesWithoutSymbols - + " Gene IDs without matching symbols.\n" ); - } - monitorOutput.append( "\tWrote " + pathname + "\n" ); - - long duration = System.currentTimeMillis() - start; - monitorOutput.append( "\tProcessed " + ((1000L*(long)theGenes.size()*(long)internalSampleIds.size())/duration) - + " values per second.\n"); - - System.out.println( monitorOutput.toString() ); - } - - // TODO NOW: export extended mutations; clinical - - // clinical data - // TODO need to be able to get all cases for a cancer - /* - // get cases - DaoSurvival aDaoClinicalData = new DaoSurvival(); - DaoCaseList aDaoCaseList = new DaoCaseList(); - ArrayList allClinicalData = aDaoClinicalData.getCases( - getCaseListByStableId - - ); - - for( Survival aClinicalData : allClinicalData ){ - - } - - // open file - - String filename = aCancerStudy.getCancerStudyId() + "_clinicalData" + TabbedFileSuffix; - String pathname = directory + "/" + filename; - FileWriter outDownloadFile = new FileWriter( pathname ); - PrintWriter out = new PrintWriter( outDownloadFile ); - - // link to baseURL + filename - htmlIndexFilePrintWriter.print( "
    • " + - "Clinical data" + "
      • \n" ); - - // write file - // create entry in html - // close file - - */ - - - htmlIndexFilePrintWriter.print( "
    \n" ); - } - htmlIndexFilePrintWriter.print( "
\n" ); - htmlIndexFilePrintWriter.close(); - - } catch (DaoException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } catch (IOException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } - - System.out.println( "\nTotal time " + (System.currentTimeMillis() - beginning)/1000L + " seconds."); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ExportProfileData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ExportProfileData.java deleted file mode 100644 index 15e51b1aa8e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ExportProfileData.java +++ /dev/null @@ -1,114 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -import java.io.*; -import java.util.*; - -/** - * Export all Data Associated with a Single Genomic Profile. - * - * @author Ethan Cerami. - */ -public class ExportProfileData { - private static final String TAB = "\t"; - private static final String NEW_LINE = "\n"; - - public static void main(String[] args) throws DaoException, IOException { - // check args - if (args.length < 1) { - System.out.println("command line usage: exportProfileData.pl " + ""); - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - return; - } - String stableGeneticProfileId = args[0]; - System.out.println("Using genetic profile ID: " + stableGeneticProfileId); - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(stableGeneticProfileId); - if (geneticProfile == null) { - System.out.println("Genetic Profile not recognized: " + stableGeneticProfileId); - return; - } else { - System.out.println(geneticProfile.getProfileName()); - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - export(geneticProfile); - } - } - - public static void export(GeneticProfile profile) throws IOException, DaoException { - String fileName = profile.getStableId() + ".txt"; - FileWriter writer = new FileWriter (fileName); - ArrayList sampleList = outputHeader(profile, writer); - - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - Set geneSet = daoGeneticAlteration.getGenesInProfile(profile.getGeneticProfileId()); - ProgressMonitor.setMaxValue(geneSet.size()); - Iterator geneIterator = geneSet.iterator(); - outputProfileData(profile, writer, sampleList, daoGeneticAlteration, geneIterator); - System.out.println ("\nProfile data written to: " + fileName); - } - - private static void outputProfileData(GeneticProfile profile, FileWriter writer, - ArrayList sampleList, DaoGeneticAlteration daoGeneticAlteration, - Iterator geneIterator) throws IOException, DaoException { - while (geneIterator.hasNext()) { - ConsoleUtil.showProgress(); - ProgressMonitor.incrementCurValue(); - CanonicalGene currentGene = geneIterator.next(); - writer.write(currentGene.getHugoGeneSymbolAllCaps() + TAB); - writer.write(Long.toString(currentGene.getEntrezGeneId())); - HashMap valueMap = daoGeneticAlteration.getGeneticAlterationMap - (profile.getGeneticProfileId(), currentGene.getEntrezGeneId()); - for (Integer sampleId: sampleList) { - writer.write(TAB + valueMap.get(sampleId)); - } - writer.write(NEW_LINE); - } - writer.close(); - } - - private static ArrayList outputHeader(GeneticProfile profile, FileWriter writer) throws DaoException, IOException { - ArrayList sampleList = DaoGeneticProfileSamples.getOrderedSampleList(profile.getGeneticProfileId()); - writer.write("SYMBOL" + TAB); - writer.write("ENTREZ_GENE_ID"); - for (Integer sampleId : sampleList) { - Sample s = DaoSample.getSampleById(sampleId); - writer.write(TAB + s.getStableId()); - } - writer.write(NEW_LINE); - return sampleList; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/FilterCases.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/FilterCases.java deleted file mode 100644 index 6b39e8d7ba8..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/FilterCases.java +++ /dev/null @@ -1,154 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileReader; -import java.io.FileWriter; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import org.apache.commons.lang3.StringUtils; - -/** - * Filter cases in files - * @author jgao - */ -public class FilterCases { - public static void main(String[] args) throws Exception { - if (args.length == 0) { - System.out.println("command line usage: filterCases.pl regex.txt input_file output_file id_row_or_col starting_row_or_col:\n" - + "\te.g. filterCases.pl case_id.txt input_file output_file c10 r1"); - return; - } - - Set regexes = fileToSet(args[0]); - String concatRegex = "(("+StringUtils.join(regexes, ")|(")+"))"; - - String strIdIx = args[3].toLowerCase(); // row or column of IDs - int idIx = Integer.parseInt(strIdIx.substring(1)); - - String strStart = args[4].toLowerCase(); // starting to filter - boolean byRow = strStart.startsWith("r"); - int start = Integer.parseInt(strStart.substring(1)); - - if (byRow) { - cutRows(args[1], args[2], concatRegex, idIx, start); - } else { - cutColumns(args[1], args[2], concatRegex, idIx, start); - } - - } - - private static Set fileToSet(String caseIdFile) throws IOException { - BufferedReader in = new BufferedReader(new FileReader(caseIdFile)); - Set ret = new HashSet(); - for (String line = in.readLine(); line != null; line = in.readLine()) { - ret.add(line); - } - return ret; - } - - private static void cutColumns(String inFile, String outFile, - String concatRegex, int idRow, int startColum) throws IOException { - - BufferedReader in = new BufferedReader(new FileReader(inFile)); - - for (int i=0; i partsKept = new ArrayList(); - for (int i=0; i. -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.BufferedReader; -import java.io.FileReader; -import java.io.IOException; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.LinkedHashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Scanner; -import java.util.Set; - -import org.mskcc.cbio.portal.model.SetOfGenes; -import org.mskcc.cbio.portal.util.GeneSetUtil; - -/** - * The class verify if the gene symbols in the sample gene sets are the latest - * HUPO gene symbols. - * @author jgao - */ -public class GeneSetsVerification { - private String ncbiGeneFile; - - public GeneSetsVerification(String ncbiGeneFile) { - this.ncbiGeneFile = ncbiGeneFile; - } - - /** - * Verify if genes in gene sets are all latest HUPO gene symbols. - * @return true of all updated, otherwise, false. - * @throws IOException - */ - public boolean verify() throws IOException { - Map> geneSetMap = getGeneSet(); - Set ncbiSymbols = getNCBISymbols(); - - // go over all genes in geneset - boolean ret = true; - for (Map.Entry> entry : geneSetMap.entrySet()) { - String geneSetName = entry.getKey(); - for (String gene : entry.getValue()) { - if (!ncbiSymbols.contains(gene)) { - ret = false; - System.err.println("Gene symbol "+gene+" is out of date " - + "(in gene set of " + geneSetName + ")"); - } - } - } - return ret; - } - - private Map> getGeneSet() throws IOException { - GeneSetUtil geneSetUtil = GeneSetUtil.getInstance(); - ArrayList geneSetList = geneSetUtil.getGeneSetList(); - Map> map = new LinkedHashMap>(geneSetList.size()); - for (SetOfGenes setOfGenes : geneSetList) { - String geneSetName = setOfGenes.getName(); - String geneList = setOfGenes.getGeneList(); - map.put(geneSetName, Arrays.asList(geneList.split(" "))); - } - return map; - } - - private Set getNCBISymbols() throws IOException { - Set set = new HashSet(); - FileReader reader = new FileReader(ncbiGeneFile); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); - while (line != null) { - if (!line.startsWith("#")) { - String[] parts = line.split("\t"); - set.add(parts[2]); - } - line = buf.readLine(); - } - set.add(""); - return set; - } - - public static void main(String[] args) throws Exception { - if (args.length == 0) { - System.out.println("command line usage: verifyGeneSets.pl" - + " "); - return; - } - - String ncbiGeneFile = args[0]; - GeneSetsVerification geneSetsVerification - = new GeneSetsVerification(ncbiGeneFile); - if (!geneSetsVerification.verify()) { - System.out.println("Please update the gene symbols in the sample" - + " gene sets. \nPress enter to continue..."); - Scanner keyboard = new Scanner(System.in); - keyboard.nextLine(); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/GenerateMutationData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/GenerateMutationData.java deleted file mode 100644 index 3cad3df24cc..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/GenerateMutationData.java +++ /dev/null @@ -1,292 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.util.Set; -import java.util.Map; -import java.util.List; -import java.util.HashMap; -import java.util.ArrayList; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; -import java.io.BufferedReader; - -/** - * Class to Generate Mutation Data, Ready for Import into CGDS. - * - * To work correctly, this script requires four data files: - * - * 1) a list of all cases. - * 2) a list of all sequenced genes. - * 3) a list of all cases, which were sequenced. - * 4) a list of mutations found. - * - * This script primarily handles the following functions: - * 1) outputs negative results; for example, if gene X is sequenced in case Y we report this as - * a zero. - * 2) multiple mutations within the same gene in the same case are output as one line. - */ -public class GenerateMutationData { - public static final String MAP_KEY_DELIMETER = ":::"; - private File allCasesFile; - private File sequencedGeneFile; - private File sequencedCaseFile; - private File knownMutationFile; - - /** - * Constructor. - * @param allCasesFile File containing all cases in project. - * @param sequencedGeneFile File containing all sequenced genes. - * @param sequencedCaseFile File containing all cases, which were sequenced. - * @param knownMutationFile File containing discovered mutations. - */ - public GenerateMutationData (File allCasesFile, File sequencedGeneFile, File sequencedCaseFile, - File knownMutationFile) { - this.allCasesFile = allCasesFile; - this.sequencedGeneFile = sequencedGeneFile; - this.sequencedCaseFile = sequencedCaseFile; - this.knownMutationFile = knownMutationFile; - } - - /** - * Executes the process. - * @throws IOException IO Error. - */ - public String execute () throws IOException { - List allCasesList = getList(allCasesFile); - List sequencedGeneList = getList(sequencedGeneFile); - List sequencedCaseList = getList(sequencedCaseFile); - - // create mutation map - Map mutationsMap = new HashMap(); - - // overlay no mutation on top of mutation map - applyNoMutationData(sequencedGeneList, sequencedCaseList, mutationsMap); - - // overlay known mutations on top of mutation map - applyKnownMutationsData(knownMutationFile, mutationsMap); - - // generate mutation file for import - return generateMutationFile(mutationsMap); - } - - /** - * Extracts a list of "things", e.g. caseIds or genes from a file. - * - * @param file File containing cases. - * @return Arrayist of "things", e.g. caseIds or genes. - */ - private ArrayList getList(File file) throws IOException { - - // list to return - ArrayList toReturn = new ArrayList(); - - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - - String line = buf.readLine(); - while (line != null) { - if (line.trim().length() > 0 && ! line.startsWith("#")) { - toReturn.add(line.trim()); - } - line = buf.readLine(); - } - - // outta here - buf.close(); - return toReturn; - } - - /** - * Returns hash map of all gene, case combinations set to NaN. - * - * @param allCasesList List - * @return Map - */ - private Map getMutationMap(List allCasesList) - throws DaoException, IOException { - - // map to return - Map toReturn = new HashMap(); - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - ArrayList geneList = daoGene.getAllGenes(); - - for (CanonicalGene canonicalGene : geneList) { - for (String caseId : allCasesList) { - toReturn.put(Long.toString(canonicalGene.getEntrezGeneId()) - + GenerateMutationData.MAP_KEY_DELIMETER + caseId, "NaN"); - } - } - - // outta here - return toReturn; - } - - /** - * Applies no mutation data to mutation map. - * - * @param sequencedGeneList List - * @param sequencedCaseList List - * @param mutationsMap Map - */ - private void applyNoMutationData(List sequencedGeneList, List sequencedCaseList, - Map mutationsMap) { - - for (String sequencedGene : sequencedGeneList) { - for (String sequencedCase : sequencedCaseList) { - String key = createKey(sequencedGene, sequencedCase); - mutationsMap.put(key, "0"); - } - } - } - - private String createKey(String sequencedGene, String sequencedCase) { - if (sequencedGene == null || sequencedCase == null - || sequencedGene.length() == 0 || sequencedCase.length() ==0) { - throw new IllegalArgumentException ("One or more parameters is null or empty."); - } - String key = sequencedGene + GenerateMutationData.MAP_KEY_DELIMETER + sequencedCase; - return key; - } - - /** - * Applies know mutations to mutation map - * - * @param knownMutationsFile File - * @param mutationsMap Map - */ - private void applyKnownMutationsData(File knownMutationsFile, - Map mutationsMap) throws IOException { - - // setup reader - FileReader reader = new FileReader(knownMutationsFile); - BufferedReader buf = new BufferedReader(reader); - - // read header - String line = buf.readLine(); - if (!line.startsWith("Entrez_Gene_Id")) { - ProgressMonitor.logWarning("Missing header in: " + knownMutationsFile.getCanonicalPath() - + " aborting mutation file import..."); - return; - } - - // concatentate all know mutations by gene/case - Map knownMutationsMap = new HashMap(); - line = buf.readLine(); - while (line != null) { - if (!line.startsWith("#")) { - String[] parts = line.split("\t"); - String key = createKey (parts[0], parts[1]); - String mutation = knownMutationsMap.get(key); - mutation = (mutation == null) ? parts[2] : mutation + "," + parts[2]; - knownMutationsMap.put(key, mutation); - } - line = buf.readLine(); - } - buf.close(); - - // apply known mutations to mutations map - Set keys = knownMutationsMap.keySet(); - for (String key : keys) { - if (!mutationsMap.containsKey(key)) { - String[] parts = key.split(":::"); - ProgressMonitor.logWarning("Missing gene/case combination: " + parts[0] + " " + parts[1] - + " in mutationMap. In other words, it looks like we have a mutation " - + "call for this gene/case combination, but the case is not listed as being " - + " sequenced in the first place!"); - continue; - } - mutationsMap.put(key, knownMutationsMap.get(key)); - } - } - - /** - * Generates mutation file for import - * - * @param mutationsMap Map - */ - private String generateMutationFile(Map mutationsMap) throws IOException { - - // write header - StringBuffer out = new StringBuffer(); - out.append ("Entrez_Gene_Id\tTumor_Case\tPROT_STRING\n"); - - // write data - Set keys = mutationsMap.keySet(); - for (String key : keys) { - String[] parts = key.split(GenerateMutationData.MAP_KEY_DELIMETER); - out.append(parts[0] + "\t" + parts[1] + "\t" + mutationsMap.get(key) + "\n"); - } - return out.toString(); - } - - public static void main(String[] args) throws Exception { - - // check args - if (args.length < 4) { - System.out.println("command line usage: generateMutationData.pl " + - " "); - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - return; - } - - // setup some vars - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - ProgressMonitor.setCurrentMessage("Generating mutation data file..."); - File allCasesFile = new File(args[0]); - File sequencedGeneFile = new File(args[1]); - File sequencedCaseFile = new File(args[2]); - File knownMutationFile = new File(args[3]); - - try { - // construct our lists - GenerateMutationData util = new GenerateMutationData(allCasesFile, sequencedGeneFile, - sequencedCaseFile, knownMutationFile); - String out = util.execute(); - System.out.println (out); - } catch (IOException e) { - System.err.println(e.getMessage()); - } - - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/GenericAssayMetaUtils.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/GenericAssayMetaUtils.java deleted file mode 100644 index 8582f071b45..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/GenericAssayMetaUtils.java +++ /dev/null @@ -1,26 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import org.cbioportal.model.EntityType; -import org.cbioportal.model.GeneticEntity; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneticEntity; - -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.stream.Collectors; - -public class GenericAssayMetaUtils { - public static Map buildGenericAssayStableIdToEntityIdMap() { - Map genericAssayStableIdToEntityIdMap = new HashMap<>(); - try { - List allEntities = DaoGeneticEntity.getAllGeneticEntities(); - genericAssayStableIdToEntityIdMap = allEntities.stream() - .filter(entityType -> EntityType.GENERIC_ASSAY.toString().equals(entityType.getEntityType())) - .collect(Collectors.toMap(GeneticEntity::getStableId, GeneticEntity::getId)); - } catch (DaoException e) { - e.printStackTrace(); - } - return genericAssayStableIdToEntityIdMap; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/GeneticAlterationImporter.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/GeneticAlterationImporter.java deleted file mode 100644 index 32aa43f2380..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/GeneticAlterationImporter.java +++ /dev/null @@ -1,59 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneticAlteration; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.util.*; - -import static java.lang.String.format; - -public class GeneticAlterationImporter { - - private final int geneticProfileId; - private Set importSetOfGenes = new HashSet<>(); - private DaoGeneticAlteration daoGeneticAlteration; - - public GeneticAlterationImporter( - int geneticProfileId, - DaoGeneticAlteration daoGeneticAlteration - ) { - this.geneticProfileId = geneticProfileId; - this.daoGeneticAlteration = daoGeneticAlteration; - } - - /** - * Check that we have not already imported information regarding this gene. - * This is an important check, because a GISTIC or RAE file may contain - * multiple rows for the same gene, and we only want to import the first row. - */ - public boolean store( - String[] values, - CanonicalGene gene, - String geneSymbol - ) throws DaoException { - try { - if (importSetOfGenes.add(gene.getEntrezGeneId())) { - daoGeneticAlteration.addGeneticAlterations(geneticProfileId, gene.getEntrezGeneId(), values); - return true; - } else { - String geneSymbolMessage = ""; - if (geneSymbol != null && !geneSymbol.equalsIgnoreCase(gene.getHugoGeneSymbolAllCaps())) { - geneSymbolMessage = " (given as alias in your file as: " + geneSymbol + ")"; - } - ProgressMonitor.logWarning(format( - "Gene %s (%d)%s found to be duplicated in your file. Duplicated row will be ignored!", - gene.getHugoGeneSymbolAllCaps(), - gene.getEntrezGeneId(), - geneSymbolMessage) - ); - return false; - } - } catch (Exception e) { - throw new RuntimeException("Aborted: Error found for row starting with " + geneSymbol + ": " + e.getMessage()); - } - } - - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/GetAllSampleLists.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/GetAllSampleLists.java deleted file mode 100644 index 5f15bc30143..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/GetAllSampleLists.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.DaoSampleList; -import org.mskcc.cbio.portal.model.SampleList; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.util.ArrayList; - -/** - * Command Line Tool to Export All Sample Lists to the Console. - */ -public class GetAllSampleLists { - - public static void main(String[] args) throws Exception { - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - DaoSampleList daoSampleList = new DaoSampleList(); - ArrayList sampleListMaster = daoSampleList.getAllSampleLists(); - for (SampleList sampleList: sampleListMaster) { - System.out.println (sampleList.getSampleListId() + ": " - + sampleList.getStableId() + ": " + sampleList.getName()); - } - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCaisesClinicalXML.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCaisesClinicalXML.java deleted file mode 100644 index 162d129f82f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCaisesClinicalXML.java +++ /dev/null @@ -1,720 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.File; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import org.dom4j.*; -import org.dom4j.io.SAXReader; -import joptsimple.*; - -import java.util.*; -/** - * - * @author jgao - */ -public class ImportCaisesClinicalXML extends ConsoleRunnable { - - private File xmlFile; - private int cancerStudyId; - - public ImportCaisesClinicalXML(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportCaisesClinicalXML(args); - runner.runInConsole(); - } - - public void run() { -// args = new String[] {"--data","/Users/jgao/projects/cbio-portal-data/studies/prad/su2c/data_clinical_caises.xml", -// "--meta","/Users/jgao/projects/cbio-portal-data/studies/prad/su2c/meta_clinical_caises.txt", -// "--loadMode", "bulkLoad"}; - try { - String progName = "ImportCaisesClinicalXML"; - String description = "Import clinical Caises XML files"; - - OptionParser parser = new OptionParser(); - parser.accepts("noprogress"); - OptionSpec data = parser.accepts( "data", - "caises data file" ).withRequiredArg().describedAs( "data_clinical_caises.xml" ).ofType( String.class ); - OptionSpec study = parser.accepts("study", - "cancer study identifier").withRequiredArg().describedAs("study").ofType(String.class); - parser.acceptsAll(Arrays.asList("dbmsAction", "loadMode")); - OptionSet options = null; - try { - options = parser.parse( args ); - //exitJVM = !options.has(returnFromMain); - } catch (OptionException e) { - throw new UsageException( - progName, description, parser, - e.getMessage()); - } - - String dataFile = null; - if( options.has( data ) ){ - dataFile = options.valueOf( data ); - } else{ - throw new UsageException( - progName, description, parser, - "'data' argument required"); - } - - String cancerStudyIdentifier = null; - if( options.has( study ) ){ - cancerStudyIdentifier = options.valueOf( study ); - } else{ - throw new UsageException( - progName, description, parser, - "'study' argument required"); - } - - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - if (cancerStudy == null) { - throw new RuntimeException("Unknown cancer study: " + cancerStudyIdentifier); - } - - this.cancerStudyId = cancerStudy.getInternalId(); - DaoClinicalEvent.deleteByCancerStudyId(cancerStudyId); - this.xmlFile = new File(dataFile); - - importData(); - - System.out.println("Done!"); - } - catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - - } - - public void setFile(File xmlFile, CancerStudy cancerStudy) { - this.xmlFile = xmlFile; - this.cancerStudyId = cancerStudy.getInternalId(); - } - - public void importData() throws Exception { - MySQLbulkLoader.bulkLoadOn(); - - // add unknow attriutes -- this - for (ClinicalAttribute ca : getClinicalAttributes(cancerStudyId)) { - if (DaoClinicalAttributeMeta.getDatum(ca.getAttrId(), cancerStudyId)==null) { - DaoClinicalAttributeMeta.addDatum(ca); - } - } - - SAXReader reader = new SAXReader(); - Document document = reader.read(xmlFile); - - List patientNodes = document.selectNodes("//Patients/Patient"); - - long clinicalEventId = DaoClinicalEvent.getLargestClinicalEventId(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - - Map mapSu2cSampleIdSampleId = getMapSu2cSampleIdSampleId(cancerStudyId); - - for (Node patientNode : patientNodes) { - String patientId = patientNode.selectSingleNode("PtProtocolStudyId").getText(); - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - if (patient==null) { - continue; - } - - System.out.println("Importing "+patientId); - - // processing clinical data - // patient clinical data - List patientClinicalData = parsePatientClinicalData(patientNode, patientId, cancerStudyId); - for (ClinicalData cd : patientClinicalData) { - if (DaoClinicalData.getDatum(cancerStudy.getCancerStudyStableId(), cd.getStableId(), cd.getAttrId())==null) { - DaoClinicalData.addPatientDatum(patient.getInternalId(), cd.getAttrId(), cd.getAttrVal()); - } - } - // sample clinical data - List sampleClinicalData = parseClinicalDataFromSpecimen(patientNode, cancerStudyId, mapSu2cSampleIdSampleId); - for (ClinicalData cd : sampleClinicalData) { - if (DaoClinicalData.getDatum(cancerStudy.getCancerStudyStableId(), cd.getStableId(), cd.getAttrId())==null) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, cd.getStableId()); - DaoClinicalData.addSampleDatum(sample.getInternalId(), cd.getAttrId(), cd.getAttrVal()); - } - } - - // processing timeline data - List clinicalEvents = new ArrayList(); - long diagnositicDate = parseStatusesAndReturnDiagnosisDate(clinicalEvents, patientNode, patientId, cancerStudyId); - parseClinicalEventsFromSpecimen(clinicalEvents, patientNode, patientId, cancerStudyId); - parseMedicalTherapies(clinicalEvents, patientNode, patientId, cancerStudyId); - parseRadiationTherapies(clinicalEvents, patientNode, patientId, cancerStudyId); - parseBrachyTherapies(clinicalEvents, patientNode, patientId, cancerStudyId); - parseDiagnostics(clinicalEvents, patientNode, patientId, cancerStudyId); - parseLabTests(clinicalEvents, patientNode, patientId, cancerStudyId); - for (ClinicalEvent clinicalEvent : clinicalEvents) { - clinicalEvent.setClinicalEventId(++clinicalEventId); - if (clinicalEvent.getStartDate()!=null) { - clinicalEvent.setStartDate(clinicalEvent.getStartDate()-diagnositicDate); - } - if (clinicalEvent.getStopDate()!=null) { - clinicalEvent.setStopDate(clinicalEvent.getStopDate()-diagnositicDate); - } - DaoClinicalEvent.addClinicalEvent(clinicalEvent); - } - } - - MySQLbulkLoader.flushAll(); - } - - private static Map getMapSu2cSampleIdSampleId(int cancerStudyId) throws DaoException { - List clinicalData = DaoClinicalData.getDataByAttributeIds(cancerStudyId, Arrays.asList("SU2C_SAMPLE_ID")); - Map map = new HashMap(); - for (ClinicalData cd : clinicalData) { - String su2cSampleId = cd.getAttrVal(); - String sampleId = cd.getStableId(); - if (null!=map.put(su2cSampleId, sampleId)) { - System.err.println("Something is wrong: there are two samples with the same su2c ID: "+su2cSampleId); - } - } - return map; - } - - private static List getClinicalAttributes(int cancerStudyId) { - return Arrays.asList( -// new ClinicalAttribute("PATIENT_ID", "Patient ID", "Patient ID", "STRING", true, "1"), - new ClinicalAttribute("RACE", "Race", "Race", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("AGE", "Age", "Age", "Number", true, "1", cancerStudyId), - new ClinicalAttribute("PATIENT_CATEGORY", "Patient category", "Patient category", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("CLIN_T_STAGE", "Clinical T stage", "Clinical T stage", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("CLIN_N_STAGE", "Clinical N stage", "Clinical N stage", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("CLIN_M_STAGE", "Clinical M stage", "Clinical M stage", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("HISTOLOGY", "Histology", "Histology", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("PATH_T_STAGE", "Pathology T stage", "Pathology T stage", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("PATH_N_STAGE", "Pathology N stage", "Pathology N stage", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("PATH_M_STAGE", "Pathology M stage", "Pathology M stage", "STRING", true, "1", cancerStudyId), - new ClinicalAttribute("GLEASON_SCORE_1", "Gleason score 1", "Gleason score 1", "Number", true, "1", cancerStudyId), - new ClinicalAttribute("GLEASON_SCORE_2", "Gleason score 2", "Gleason score 2", "Number", true, "1", cancerStudyId), - new ClinicalAttribute("GLEASON_SCORE", "Gleason score", "Gleason score", "Number", true, "1", cancerStudyId), - new ClinicalAttribute("TUMOR_SITE", "Tumor site", "Tumor site", "STRING", false, "1", cancerStudyId) - ); - } - - private static List parsePatientClinicalData( - Node patientNode, String patientId, int cancerStudyId) { - List clinicalData = new ArrayList(); - - Node node = patientNode.selectSingleNode("PtRace"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "RACE", node.getText())); - } - - node = patientNode.selectSingleNode("PtRegistrationAge"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "AGE", node.getText())); - } - - node = patientNode.selectSingleNode("Categories/Category/Category"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "PATIENT_CATEGORY", node.getText())); - } - - node = patientNode.selectSingleNode("ClinicalStages/ClinicalStage/ClinStageT"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "CLIN_T_STAGE", node.getText())); - } - - node = patientNode.selectSingleNode("ClinicalStages/ClinicalStage/ClinStageN"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "CLIN_N_STAGE", node.getText())); - } - - node = patientNode.selectSingleNode("ClinicalStages/ClinicalStage/ClinStageM"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "CLIN_M_STAGE", node.getText())); - } - - node = patientNode.selectSingleNode("Pathologies/Pathology/PathHistology"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "HISTOLOGY", node.getText())); - } - - node = patientNode.selectSingleNode("Pathologies/Pathology/PathologyStageGrades/PathologyStageGrade/PathStageT"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "PATH_T_STAGE", node.getText())); - } - - node = patientNode.selectSingleNode("Pathologies/Pathology/PathologyStageGrades/PathologyStageGrade/PathStageN"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "PATH_N_STAGE", node.getText())); - } - - node = patientNode.selectSingleNode("Pathologies/Pathology/PathologyStageGrades/PathologyStageGrade/PathStageM"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "PATH_M_STAGE", node.getText())); - } - - node = patientNode.selectSingleNode("Pathologies/Pathology/ProstateBiopsyPaths/ProstateBiopsyPath/PathGG1"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "GLEASON_SCORE_1", node.getText())); - } - - node = patientNode.selectSingleNode("Pathologies/Pathology/ProstateBiopsyPaths/ProstateBiopsyPath/PathGG2"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "GLEASON_SCORE_2", node.getText())); - } - - node = patientNode.selectSingleNode("Pathologies/Pathology/ProstateBiopsyPaths/ProstateBiopsyPath/PathGGS"); - if (node!=null) { - clinicalData.add(new ClinicalData(cancerStudyId, patientId, "GLEASON_SCORE", node.getText())); - } - - return clinicalData; - } - - private static void parseMedicalTherapies(List clinicalEvents, - Node patientNode, String patientId, int cancerStudyId) { - List treatmentNodes = patientNode.selectNodes("MedicalTherapies/MedicalTherapy"); - - for (Node treatmentNode : treatmentNodes) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setPatientId(patient.getInternalId()); - clinicalEvent.setEventType("TREATMENT"); - clinicalEvent.addEventDatum("TREATMENT_TYPE","Medical Therapy"); - - Node node = treatmentNode.selectSingleNode("MedTxDate"); - if (node==null) { - System.err.println("no date"); - continue; - } - clinicalEvent.setStartDate(Long.parseLong(node.getText())); - - node = treatmentNode.selectSingleNode("MedTxStopDate"); - if (node!=null) { - clinicalEvent.setStopDate(Long.parseLong(node.getText())); - } - - node = treatmentNode.selectSingleNode("MedTxType"); - if (node!=null) { - clinicalEvent.addEventDatum("SUBTYPE", node.getText()); - } - - node = treatmentNode.selectSingleNode("MedTxIndication"); - if (node!=null) { - clinicalEvent.addEventDatum("INDICATION", node.getText()); - } - - node = treatmentNode.selectSingleNode("MedTxAgent"); - if (node!=null) { - clinicalEvent.addEventDatum("AGENT", node.getText()); - } - - node = treatmentNode.selectSingleNode("MedTxDose"); - if (node!=null) { - clinicalEvent.addEventDatum("DOSE", node.getText()); - } - - node = treatmentNode.selectSingleNode("MedTxTotalDose"); - if (node!=null) { - clinicalEvent.addEventDatum("TOTAL_DOSE", node.getText()); - } - - node = treatmentNode.selectSingleNode("MedTxUnits"); - if (node!=null) { - clinicalEvent.addEventDatum("UNIT", node.getText()); - } - - node = treatmentNode.selectSingleNode("MedTxSchedule"); - if (node!=null) { - clinicalEvent.addEventDatum("SCHEDULE", node.getText()); - } - - node = treatmentNode.selectSingleNode("MedTxRoute"); - if (node!=null) { - clinicalEvent.addEventDatum("ROUTE", node.getText()); - } - - clinicalEvents.add(clinicalEvent); - } - } - - private static void parseRadiationTherapies(List clinicalEvents, - Node patientNode, String patientId, int cancerStudyId) { - List treatmentNodes = patientNode.selectNodes("RadiationTherapies/RadiationTherapy"); - - for (Node treatmentNode : treatmentNodes) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setPatientId(patient.getInternalId()); - clinicalEvent.setEventType("TREATMENT"); - clinicalEvent.addEventDatum("TREATMENT_TYPE", "Radiation Therapy"); - - Node node = treatmentNode.selectSingleNode("RadTxDate"); - if (node==null) { - System.err.println("no date"); - continue; - } - clinicalEvent.setStartDate(Long.parseLong(node.getText())); - - node = treatmentNode.selectSingleNode("RadTxStopDate"); - if (node!=null) { - clinicalEvent.setStopDate(Long.parseLong(node.getText())); - } - - node = treatmentNode.selectSingleNode("RadTxType"); - if (node!=null) { - clinicalEvent.addEventDatum("SUBTYPE", node.getText()); - } - - node = treatmentNode.selectSingleNode("RadTxIndication"); - if (node!=null) { - clinicalEvent.addEventDatum("INDICATION", node.getText()); - } - - node = treatmentNode.selectSingleNode("RadTxIntent"); - if (node!=null) { - clinicalEvent.addEventDatum("INTENT", node.getText()); - } - - node = treatmentNode.selectSingleNode("RadTxDosePerFraction"); - if (node!=null) { - clinicalEvent.addEventDatum("DOSE_PER_FRACTION", node.getText()); - } - - node = treatmentNode.selectSingleNode("RadTxTotalDose"); - if (node!=null) { - clinicalEvent.addEventDatum("TOTAL_DOSE", node.getText()); - } - - node = treatmentNode.selectSingleNode("RadTxUnits"); - if (node!=null) { - clinicalEvent.addEventDatum("UNIT", node.getText()); - } - - node = treatmentNode.selectSingleNode("RadTxNumFractions"); - if (node!=null) { - clinicalEvent.addEventDatum("NUM_FRACTIONS", node.getText()); - } - - node = treatmentNode.selectSingleNode("RadTxTarget"); - if (node!=null) { - clinicalEvent.addEventDatum("TARGET", node.getText()); - } - - clinicalEvents.add(clinicalEvent); - } - } - - private static void parseBrachyTherapies(List clinicalEvents, - Node patientNode, String patientId, int cancerStudyId) { - List treatmentNodes = patientNode.selectNodes("BrachyTherapies/BrachyTherapy"); - - for (Node treatmentNode : treatmentNodes) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setPatientId(patient.getInternalId()); - clinicalEvent.setEventType("TREATMENT"); - clinicalEvent.addEventDatum("TREATMENT_TYPE","Brachytherapy"); - - Node node = treatmentNode.selectSingleNode("BrachyDate"); - if (node==null) { - System.err.println("no date"); - continue; - } - clinicalEvent.setStartDate(Long.parseLong(node.getText())); - - node = treatmentNode.selectSingleNode("BrachyIsotope"); - if (node!=null) { - clinicalEvent.addEventDatum("BRACHY_ISOTOPE", node.getText()); - } - - node = treatmentNode.selectSingleNode("BrachyPrescribedDose"); - if (node!=null) { - clinicalEvent.addEventDatum("DOSE", node.getText()); - } - - node = treatmentNode.selectSingleNode("BrachyDoseNotes"); - if (node!=null) { - clinicalEvent.addEventDatum("DOSE_NOTES", node.getText()); - } - - clinicalEvents.add(clinicalEvent); - } - } - - private static void parseDiagnostics(List clinicalEvents, - Node patientNode, String patientId, int cancerStudyId) { - List diagnosticNodes = patientNode.selectNodes("Diagnostics/Diagnostic"); - for (Node diagnosticNode : diagnosticNodes) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setPatientId(patient.getInternalId()); - clinicalEvent.setEventType("DIAGNOSTIC"); - - Node node = diagnosticNode.selectSingleNode("DxDate"); - if (node==null) { - System.err.println("no date"); - continue; - } - clinicalEvent.setStartDate(Long.parseLong(node.getText())); - - node = diagnosticNode.selectSingleNode("DxType"); - if (node!=null) { - clinicalEvent.addEventDatum("DIAGNOSTIC_TYPE", node.getText()); - } - - node = diagnosticNode.selectSingleNode("DxTarget"); - if (node!=null) { - clinicalEvent.addEventDatum("TARGET", node.getText()); - } - - node = diagnosticNode.selectSingleNode("DxResult"); - if (node!=null) { - clinicalEvent.addEventDatum("RESULT", node.getText()); - } - - node = diagnosticNode.selectSingleNode("DxNotes"); - if (node!=null) { - clinicalEvent.addEventDatum("NOTES", node.getText()); - } - - node = diagnosticNode.selectSingleNode("DxSide"); - if (node!=null) { - clinicalEvent.addEventDatum("SIDE", node.getText()); - } - - node = diagnosticNode.selectSingleNode("DxStatus"); - if (node!=null) { - clinicalEvent.addEventDatum("STATUS", node.getText()); - } - - node = diagnosticNode.selectSingleNode("ImgBaseline"); - if (node!=null) { - clinicalEvent.addEventDatum("BASELINE", node.getText()); - } - - node = diagnosticNode.selectSingleNode("DxNumNewTumors"); - if (node!=null) { - clinicalEvent.addEventDatum("NUM_NEW_TUMORS", node.getText()); - } - - clinicalEvents.add(clinicalEvent); - } - } - - private static void parseLabTests(List clinicalEvents, - Node patientNode, String patientId, int cancerStudyId) { - List labTestNodes = patientNode.selectNodes("LabTests/LabTest"); - for (Node labTestNode : labTestNodes) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setPatientId(patient.getInternalId()); - clinicalEvent.setEventType("LAB_TEST"); - - Node node = labTestNode.selectSingleNode("LabDate"); - if (node==null) { - System.err.println("no date"); - continue; - } - clinicalEvent.setStartDate(Long.parseLong(node.getText())); - - node = labTestNode.selectSingleNode("LabTest"); - if (node==null) { - System.err.println("no lab test name"); - continue; - } - clinicalEvent.addEventDatum("TEST", node.getText()); - - node = labTestNode.selectSingleNode("LabResult"); - if (node==null) { - System.err.println("no lab result"); - continue; - } - clinicalEvent.addEventDatum("RESULT", node.getText()); - - node = labTestNode.selectSingleNode("LabUnits"); - if (node!=null) { - clinicalEvent.addEventDatum("UNIT", node.getText()); - } - - node = labTestNode.selectSingleNode("LabNormalRange"); - if (node!=null) { - clinicalEvent.addEventDatum("NORMAL_RANGE", node.getText()); - } - - node = labTestNode.selectSingleNode("LabNotes"); - if (node!=null) { - clinicalEvent.addEventDatum("NOTES", node.getText()); - } - - clinicalEvents.add(clinicalEvent); - } - } - - private static void parseClinicalEventsFromSpecimen(List clinicalEvents, - Node patientNode, String patientId, int cancerStudyId) { - List specimenAccessionNodes = patientNode.selectNodes("SpecimenAccessions/SpecimenAccession"); - for (Node specimenAccessionNode : specimenAccessionNodes) { - Node node = specimenAccessionNode.selectSingleNode("AccessionDate"); - if (node==null) { - System.err.println("no date"); - continue; - } - long date = Long.parseLong(node.getText()); - - String site = null, type = null, instrument = null; - node = specimenAccessionNode.selectSingleNode("AccessionAnatomicSite"); - if (node!=null) { - site = node.getText(); - } - node = specimenAccessionNode.selectSingleNode("AccessionVisitType"); - if (node!=null) { - type = node.getText(); - } - node = specimenAccessionNode.selectSingleNode("AccessionProcInstrument"); - if (node!=null) { - instrument = node.getText(); - } - - List specimenNodes = specimenAccessionNode.selectNodes("Specimens/Specimen"); - for (Node specimenNode : specimenNodes) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setPatientId(patient.getInternalId()); - clinicalEvent.setEventType("SPECIMEN"); - clinicalEvent.setStartDate(date); - if (site!=null) { - clinicalEvent.addEventDatum("SPECIMEN_SITE", site); - } - if (type!=null) { - clinicalEvent.addEventDatum("ANATOMIC_SITE", type); - } - if (instrument!=null) { - clinicalEvent.addEventDatum("PROC_INSTRUMENT", instrument); - } - - addAllDataUnderNode(clinicalEvent, Element.class.cast(specimenNode)); - - clinicalEvents.add(clinicalEvent); - } - } - } - - private static List parseClinicalDataFromSpecimen(Node patientNode, int cancerStudyId, Map mapSu2cSampleIdSampleId) { - List clinicalData = new ArrayList(); - List specimenAccessionNodes = patientNode.selectNodes("SpecimenAccessions/SpecimenAccession"); - for (Node specimenAccessionNode : specimenAccessionNodes) { - String site = null, instrument = null; - Node node = specimenAccessionNode.selectSingleNode("AccessionAnatomicSite"); - if (node!=null) { - site = node.getText(); - } - node = specimenAccessionNode.selectSingleNode("AccessionProcInstrument"); - if (node!=null) { - instrument = node.getText(); - } - - List specimenNodes = specimenAccessionNode.selectNodes("Specimens/Specimen"); - for (Node specimenNode : specimenNodes) { - node = specimenNode.selectSingleNode("SpecimenReferenceNumber"); - if (node==null) { - continue; - } - String su2cSampleId = node.getText(); - String sampleId = mapSu2cSampleIdSampleId.get(su2cSampleId); - if (sampleId == null) { - continue; - } - - if (site!=null) { - ClinicalData clinicalDatum = new ClinicalData(cancerStudyId, sampleId, "TUMOR_SITE", site); - clinicalData.add(clinicalDatum); - } - - if (instrument!=null) { - ClinicalData clinicalDatum = new ClinicalData(cancerStudyId, sampleId, "PROC_INSTRUMENT", instrument); - clinicalData.add(clinicalDatum); - } - } - } - return clinicalData; - } - - private static long parseStatusesAndReturnDiagnosisDate(List clinicalEvents, - Node patientNode, String patientId, int cancerStudyId) { - List statusNodes = patientNode.selectNodes("Statuses/Status"); - long diagnosisDate = 0; - for (Node statusNode : statusNodes) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - ClinicalEvent clinicalEvent = new ClinicalEvent(); - clinicalEvent.setPatientId(patient.getInternalId()); - clinicalEvent.setEventType("STATUS"); - - Node node = statusNode.selectSingleNode("StatusDate"); - if (node==null) { - System.err.println("no date"); - continue; - } - long statusDate = Long.parseLong(node.getText()); - clinicalEvent.setStartDate(statusDate); - - node = statusNode.selectSingleNode("Status"); - if (node==null) { - System.err.println("no status"); - continue; - } - clinicalEvent.addEventDatum("STATUS", node.getText()); - if (node.getText().equalsIgnoreCase("Diagnosis Date")) { - diagnosisDate = statusDate; - } - - clinicalEvents.add(clinicalEvent); - } - return diagnosisDate; - } - - private static void addAllDataUnderNode(ClinicalEvent clinicalEvent, Element element) { - for ( Iterator i = element.elementIterator(); i.hasNext(); ) { - Element child = (Element) i.next(); - clinicalEvent.addEventDatum(child.getName(), child.getTextTrim()); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCancerStudy.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCancerStudy.java deleted file mode 100644 index 03372dbb958..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCancerStudy.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.*; - -import java.io.File; - -/** - * Command Line Tool to Import a Single Cancer Study. - */ -public class ImportCancerStudy extends ConsoleRunnable { - - public void run() { - try { - if (args.length < 1) { - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - throw new UsageException( - "importCancerStudy.pl", - null, - ""); - } - - File file = new File(args[0]); - SpringUtil.initDataSource(); - CancerStudy cancerStudy = CancerStudyReader.loadCancerStudy(file); - CancerStudyTags cancerStudyTags = CancerStudyTagsReader.loadCancerStudyTags(file, cancerStudy); - String message = "Loaded the following cancer study:" + - "\n --> Study ID: " + cancerStudy.getInternalId() + - "\n --> Name: " + cancerStudy.getName() + - "\n --> Description: " + cancerStudy.getDescription(); - - if (cancerStudyTags != null) { - message += "\n --> Study Tags: " + cancerStudyTags.getTags(); - } - ProgressMonitor.setCurrentMessage(message); - } - catch (RuntimeException e) { - throw e; - } - catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportCancerStudy(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportCancerStudy(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportClinicalData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportClinicalData.java deleted file mode 100644 index 11eeedbc650..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportClinicalData.java +++ /dev/null @@ -1,742 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.util.SurvivalAttributeUtil.SurvivalStatusAttributes; - -import java.io.*; -import joptsimple.*; -import java.util.*; -import java.util.regex.*; -import org.apache.commons.collections4.map.MultiKeyMap; - -public class ImportClinicalData extends ConsoleRunnable { - - public static final String DELIMITER = "\t"; - public static final String METADATA_PREFIX = "#"; - public static final String SAMPLE_ID_COLUMN_NAME = "SAMPLE_ID"; - public static final String PATIENT_ID_COLUMN_NAME = "PATIENT_ID"; - public static final String SAMPLE_TYPE_COLUMN_NAME = "SAMPLE_TYPE"; - private int numSampleSpecificClinicalAttributesAdded = 0; - private int numPatientSpecificClinicalAttributesAdded = 0; - private int numEmptyClinicalAttributesSkipped = 0; - private int numSamplesProcessed = 0; - - private static Properties properties; - - private File clinicalDataFile; - private CancerStudy cancerStudy; - private AttributeTypes attributesType; - private boolean relaxed; - private Set patientIds = new HashSet(); - - public static enum MissingAttributeValues - { - NOT_APPLICABLE("Not Applicable"), - NOT_AVAILABLE("Not Available"), - PENDING("Pending"), - DISCREPANCY("Discrepancy"), - COMPLETED("Completed"), - NULL("null"), - MISSING(""), - NA("NA"); - - private String propertyName; - - MissingAttributeValues(String propertyName) { this.propertyName = propertyName; } - public String toString() { return propertyName; } - - static public boolean has(String value) { - if (value == null) return false; - if (value.trim().equals("")) return true; - try { - value = value.replaceAll("[\\[|\\]]", ""); - value = value.replaceAll(" ", "_"); - return valueOf(value.toUpperCase()) != null; - } - catch (IllegalArgumentException x) { - return false; - } - } - - static public String getNotAvailable() - { - return "[" + NOT_AVAILABLE.toString() + "]"; - } - } - - public static enum AttributeTypes - { - PATIENT_ATTRIBUTES("PATIENT"), - SAMPLE_ATTRIBUTES("SAMPLE"), - MIXED_ATTRIBUTES("MIXED"); - - private String attributeType; - - AttributeTypes(String attributeType) {this.attributeType = attributeType;} - - public String toString() {return attributeType;} - } - - public static enum DataTypes - { - STRING, - NUMBER, - BOOLEAN; - - static public boolean has(String value) { - try { - return valueOf(value.toUpperCase()) != null; - } - catch (IllegalArgumentException x) { - return false; - } - } - } - - public void setFile(CancerStudy cancerStudy, File clinicalDataFile, String attributesDatatype, boolean relaxed) - { - this.cancerStudy = cancerStudy; - this.clinicalDataFile = clinicalDataFile; - this.attributesType = AttributeTypes.valueOf(attributesDatatype); - this.relaxed = relaxed; - } - - public void importData() throws Exception - { - // if bulkLoading is ever turned off, - // code has to be added to check whether - // a clinical attribute update should be - // perform instead of an insert - MySQLbulkLoader.bulkLoadOn(); - - if(relaxed) { - MySQLbulkLoader.relaxedModeOn(); - } - - FileReader reader = new FileReader(clinicalDataFile); - BufferedReader buff = new BufferedReader(reader); - List columnAttrs = grabAttrs(buff); - - int patientIdIndex = findPatientIdColumn(columnAttrs); - int sampleIdIndex = findSampleIdColumn(columnAttrs); - - //validate required columns: - if (patientIdIndex < 0) { - //PATIENT_ID is required in both file types: - throw new RuntimeException("Aborting owing to failure to find " + - PATIENT_ID_COLUMN_NAME + - " in file. Please check your file format and try again."); - } - if (attributesType.toString().equals("SAMPLE") && sampleIdIndex < 0) { - //SAMPLE_ID is required in SAMPLE file type: - throw new RuntimeException("Aborting owing to failure to find " + - SAMPLE_ID_COLUMN_NAME + - " in file. Please check your file format and try again."); - } - importData(buff, columnAttrs); - - if (getAttributesType() == ImportClinicalData.AttributeTypes.SAMPLE_ATTRIBUTES || - getAttributesType() == ImportClinicalData.AttributeTypes.MIXED_ATTRIBUTES) { - DaoPatient.createSampleCountClinicalData(cancerStudy.getInternalId()); - } - - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - MySQLbulkLoader.relaxedModeOff(); - } - } - - private List grabAttrs(BufferedReader buff) throws DaoException, IOException { - List attrs = new ArrayList(); - - String line = buff.readLine(); - String[] displayNames = splitFields(line); - String[] descriptions, datatypes, attributeTypes = {}, priorities, colnames; - if (line.startsWith(METADATA_PREFIX)) { - // contains meta data about the attributes - descriptions = splitFields(buff.readLine()); - datatypes = splitFields(buff.readLine()); - - switch(this.attributesType) - { - case PATIENT_ATTRIBUTES: - case SAMPLE_ATTRIBUTES: - attributeTypes = new String[displayNames.length]; - Arrays.fill(attributeTypes, this.attributesType.toString()); - break; - case MIXED_ATTRIBUTES: - attributeTypes = splitFields(buff.readLine()); - //quick validation: attributeTypes values should be either PATIENT or SAMPLE - for (String attributeTypeVal : attributeTypes) { - if (!attributeTypeVal.equalsIgnoreCase(AttributeTypes.PATIENT_ATTRIBUTES.toString()) && - !attributeTypeVal.equalsIgnoreCase(AttributeTypes.SAMPLE_ATTRIBUTES.toString())) { - throw new RuntimeException("Invalid value for attributeType: " + attributeTypeVal + ". Check the header rows of your data file."); - } - } - break; - } - - //quick validation: datatypes values should be one of the valid types - for (String datatype : datatypes) { - if (!DataTypes.has(datatype)) { - throw new RuntimeException("Invalid value for datatype: " + datatype + ". Check the header rows of your data file."); - } - } - - priorities = splitFields(buff.readLine()); - colnames = splitFields(buff.readLine()); - - if (displayNames.length != colnames.length - || descriptions.length != colnames.length - || datatypes.length != colnames.length - || attributeTypes.length != colnames.length - || priorities.length != colnames.length) { - throw new DaoException("attribute and metadata mismatch in clinical staging file. All lines in header and data rows should have the same number of columns."); - } - } else { - // attribute Id header only - colnames = displayNames; - descriptions = new String[colnames.length]; - Arrays.fill(descriptions, ClinicalAttribute.MISSING); - datatypes = new String[colnames.length]; - Arrays.fill(datatypes, ClinicalAttribute.DEFAULT_DATATYPE); - attributeTypes = new String[colnames.length]; - Arrays.fill(attributeTypes, ClinicalAttribute.SAMPLE_ATTRIBUTE); - priorities = new String[colnames.length]; - Arrays.fill(priorities, "1"); - displayNames = new String[colnames.length]; - Arrays.fill(displayNames, ClinicalAttribute.MISSING); - } - - for (int i = 0; i < colnames.length; i+=1) { - ClinicalAttribute attr = - new ClinicalAttribute(colnames[i].trim().toUpperCase(), displayNames[i], - descriptions[i], datatypes[i], - attributeTypes[i].equals(ClinicalAttribute.PATIENT_ATTRIBUTE), - priorities[i], - cancerStudy.getInternalId()); - attrs.add(attr); - //skip PATIENT_ID / SAMPLE_ID columns, i.e. these are not clinical attributes but relational columns: - if (attr.getAttrId().equals(PATIENT_ID_COLUMN_NAME) || - attr.getAttrId().equals(SAMPLE_ID_COLUMN_NAME)) { - continue; - } - ClinicalAttribute attrInDb = DaoClinicalAttributeMeta.getDatum(attr.getAttrId(), cancerStudy.getInternalId()); - if (attrInDb != null) { - ProgressMonitor.logWarning("Attribute " + attrInDb.getAttrId() + " found twice in your study!"); - continue; - } - DaoClinicalAttributeMeta.addDatum(attr); - } - return attrs; - } - - private String[] splitFields(String line) throws IOException { - line = line.replaceAll("^"+METADATA_PREFIX+"+", ""); - String[] fields = line.split(DELIMITER, -1); - - return fields; - } - - private void importData(BufferedReader buff, List columnAttrs) throws Exception - { - String line; - MultiKeyMap attributeMap = new MultiKeyMap(); - while ((line = buff.readLine()) != null) { - if (skipLine(line.trim())) { - continue; - } - - String[] fieldValues = getFieldValues(line, columnAttrs); - addDatum(fieldValues, columnAttrs, attributeMap); - } - } - - private boolean skipLine(String line) - { - return (line.isEmpty() || line.substring(0,1).equals(METADATA_PREFIX)); - } - - /** - * Takes in the given line and returns the list of field values by - * splitting the line on DELIMITER. - * - * @param line - * @param columnAttrs - * @return the list of values, one for each column. Value will be "" for empty columns. - */ - private String[] getFieldValues(String line, List columnAttrs) - { - // split on delimiter: - String[] fieldValues = line.split(DELIMITER, -1); - - // validate: if number of fields is incorrect, give exception - if (fieldValues.length != columnAttrs.size()) { - throw new IllegalArgumentException("Number of columns in line is not as expected. Expected: " + - columnAttrs.size() + " columns, found: " + fieldValues.length + ", for line: " + line); - } - - // now iterate over lines and trim each value: - for (int i = 0; i < fieldValues.length; i++) - { - fieldValues[i] = fieldValues[i].trim(); - } - return fieldValues; - } - - private boolean addDatum(String[] fields, List columnAttrs, MultiKeyMap attributeMap) throws Exception - { - int sampleIdIndex = findSampleIdColumn(columnAttrs); - String stableSampleId = (sampleIdIndex >= 0) ? fields[sampleIdIndex] : ""; - stableSampleId = StableIdUtil.getSampleId(stableSampleId); - int patientIdIndex = findPatientIdColumn(columnAttrs); - String stablePatientId = (patientIdIndex >= 0) ? fields[patientIdIndex] : ""; - stablePatientId = StableIdUtil.getPatientId(stablePatientId); - int internalSampleId = -1; - int internalPatientId = -1; - - //check if sample is not already added: - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudy.getInternalId(), stableSampleId, false); - if (sample != null) { - //this should be a WARNING in case of TCGA studies (see https://github.com/cBioPortal/cbioportal/issues/839#issuecomment-203452415) - //and an ERROR in other studies. I.e. a sample should occur only once in clinical file! - if (stableSampleId.startsWith("TCGA-")) { - ProgressMonitor.logWarning("Sample " + stableSampleId + " found to be duplicated in your file. Only data of the first sample will be processed."); - return false; - } - //give error or warning if sample is already in DB and this is NOT expected (i.e. not supplemental data): - if (!this.isSupplementalData()) { - throw new RuntimeException("Error: Sample " + stableSampleId + " found to be duplicated in your file."); - } - else { - internalSampleId = sample.getInternalId(); - } - } - else { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), stablePatientId); - if (patient != null) { - //patient exists, get internal id: - internalPatientId = patient.getInternalId(); - } - else { - //add patient: - internalPatientId = (patientIdIndex >= 0) ? - addPatientToDatabase(fields[patientIdIndex]) : -1; - } - // sample is new, so attempt to add to DB - internalSampleId = (stableSampleId.length() > 0) ? - addSampleToDatabase(stableSampleId, fields, columnAttrs) : -1; - - } - - //validate and count: - if (internalSampleId != -1) { - //some minimal validation/fail safe for now: only continue if patientId is same as patient id in - //existing sample (can occur in case of this.isSupplementalData or in case of parsing bug in addSampleToDatabase): - internalPatientId = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), stablePatientId).getInternalId(); - if (internalPatientId != DaoSample.getSampleById(internalSampleId).getInternalPatientId()) { - throw new RuntimeException("Error: Sample " + stableSampleId + " was previously linked to another patient, and not to " + stablePatientId); - } - numSamplesProcessed++; - } - - for (int lc = 0; lc < fields.length; lc++) { - //if lc is sampleIdIndex or patientIdIndex, skip as well since these are the relational fields: - if (lc == sampleIdIndex || lc == patientIdIndex) { - continue; - } - //if the value matches one of the missing values, skip this attribute: - if (MissingAttributeValues.has(fields[lc])) { - numEmptyClinicalAttributesSkipped++; - continue; - } - boolean isPatientAttribute = columnAttrs.get(lc).isPatientAttribute(); - if (isPatientAttribute && internalPatientId != -1) { - // The attributeMap keeps track what patient/attribute to value pairs are being added to the DB. If there are duplicates, - // (which can happen in a MIXED_ATTRIBUTES type clinical file), we need to make sure that the value for the same - // attributes are consistent. This prevents duplicate entries in the temp file that the MySqlBulkLoader uses. - if(!attributeMap.containsKey(internalPatientId, columnAttrs.get(lc).getAttrId())) { - addDatum(internalPatientId, columnAttrs.get(lc).getAttrId(), fields[lc], - ClinicalAttribute.PATIENT_ATTRIBUTE); - attributeMap.put(internalPatientId, columnAttrs.get(lc).getAttrId(), fields[lc]); - } - else if (!relaxed) { - throw new RuntimeException("Error: Duplicated patient in file"); - } - // if the "relaxed" flag was given, and the new record e.g. tries to override a previously set attribute for - // an existing patient (e.g. set AGE from 2 to 10...in same study, or GENDER from M to F), then the system will keep - // the previous value and give a warning. NB: this is a kind of "random" harmonization strategy and is - // NOT recommended! TODO - change this to an Exception instead of just a warning. - else if (!attributeMap.get(internalPatientId, columnAttrs.get(lc).getAttrId()).equals(fields[lc])) { - ProgressMonitor.logWarning("Error: Duplicated patient " + stablePatientId + " with different values for patient attribute " + columnAttrs.get(lc).getAttrId() + - "\n\tValues: " + attributeMap.get(internalPatientId, columnAttrs.get(lc).getAttrId()) + " " + fields[lc]); - } - } - else if (internalSampleId != -1) { - if(!attributeMap.containsKey(internalSampleId, columnAttrs.get(lc).getAttrId())) { - addDatum(internalSampleId, columnAttrs.get(lc).getAttrId(), fields[lc], - ClinicalAttribute.SAMPLE_ATTRIBUTE); - attributeMap.put(internalSampleId, columnAttrs.get(lc).getAttrId(), fields[lc]); - } - else if (!relaxed) { - throw new RuntimeException("Error: Duplicated sample in file"); - } - else if (!attributeMap.get(internalSampleId, columnAttrs.get(lc).getAttrId()).equals(fields[lc])) { - ProgressMonitor.logWarning("Error: Duplicated sample " + stableSampleId + " with different values for sample attribute " + columnAttrs.get(lc).getAttrId() + - "\n\tValues: " + attributeMap.get(internalSampleId, columnAttrs.get(lc).getAttrId()) + " " + fields[lc]); - } - } - } - return true; - } - - private boolean isSupplementalData() { - //TODO : for now this is only true in MIXED_ATTRIBUTES type. We could add an extra flag "SUPPLEMENTAL_DATA" to make this more explicit: - return this.getAttributesType() == ImportClinicalData.AttributeTypes.MIXED_ATTRIBUTES; - } - - private int findPatientIdColumn(List attrs) - { - return findAttributeColumnIndex(PATIENT_ID_COLUMN_NAME, attrs); - } - - private int findSampleIdColumn(List attrs) - { - return findAttributeColumnIndex(SAMPLE_ID_COLUMN_NAME, attrs); - } - - private int findSampleTypeColumn(List attrs) { - return findAttributeColumnIndex(SAMPLE_TYPE_COLUMN_NAME, attrs); - } - - private int findAttributeColumnIndex(String columnHeader, List attrs) - { - for (int lc = 0; lc < attrs.size(); lc++) { - if (attrs.get(lc).getAttrId().equals(columnHeader)) { - return lc; - } - } - return -1; - } - - private int addPatientToDatabase(String patientId) throws Exception - { - int internalPatientId = -1; - if (validPatientId(patientId)) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), patientId); - //other validations: - //in case of PATIENT data import, there are some special checks: - if (getAttributesType() == ImportClinicalData.AttributeTypes.PATIENT_ATTRIBUTES) { - //if clinical data is already there, then something has gone wrong (e.g. patient is duplicated in file), abort: - if (patient != null && DaoClinicalData.getDataByPatientId(cancerStudy.getInternalId(), patientId).size() > 0) { - throw new RuntimeException("Something has gone wrong. Patient " + patientId + " already has clinical data loaded."); - } - //if patient is duplicated, abort as well in this case: - if (!patientIds.add(patientId)) { - throw new RuntimeException("Error. Patient " + patientId + " found to be duplicated in your file."); - } - } - - if (patient != null) { - //in all cases (SAMPLE, PATIENT, or MIXED data import) this can be expected, so just fetch it: - internalPatientId = patient.getInternalId(); - } - else { - //in case of PATIENT data import and patient == null : - if (getAttributesType() == ImportClinicalData.AttributeTypes.PATIENT_ATTRIBUTES) { - //not finding the patient it unexpected (as SAMPLE data import should always precede it), but - //can happen when this patient does not have any samples for example. In any case, warn about it: - ProgressMonitor.logWarning("Patient " + patientId + " being added for the first time. Apparently this patient was not in the samples file, or the samples file is not yet loaded (should be loaded before this one)"); - } - - patient = new Patient(cancerStudy, patientId); - internalPatientId = DaoPatient.addPatient(patient); - } - } - return internalPatientId; - } - - private int addSampleToDatabase(String sampleId, String[] fields, List columnAttrs) throws Exception - { - int sampleTypeIndex = findSampleTypeColumn(columnAttrs); - String sampleTypeStr = (sampleTypeIndex != -1) ? fields[sampleTypeIndex] : null; - if (sampleTypeStr != null) { - // want to match Sample.Type enum names - sampleTypeStr = sampleTypeStr.trim().toUpperCase().replaceAll(" ", "_"); - } - Sample.Type sampleType = Sample.Type.has(sampleTypeStr) ? Sample.Type.valueOf(sampleTypeStr) : null; - - int internalSampleId = -1; - if (validSampleId(sampleId) && !StableIdUtil.isNormal(sampleId)) { - // want to try and capture normal sample types based on value for SAMPLE_TYPE - // if present in clinical data - if (sampleType != null && sampleType.isNormal()) { - return internalSampleId; - } - String stablePatientId = getStablePatientId(sampleId, fields, columnAttrs); - if (validPatientId(stablePatientId)) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), stablePatientId); - if (patient == null) { - addPatientToDatabase(stablePatientId); - patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), stablePatientId); - } - sampleId = StableIdUtil.getSampleId(sampleId); - internalSampleId = DaoSample.addSample(new Sample(sampleId, patient.getInternalId(), - sampleTypeStr)); - } - } - - return internalSampleId; - } - - private String getStablePatientId(String sampleId, String[] fields, List columnAttrs) - { - Matcher tcgaSampleBarcodeMatcher = StableIdUtil.TCGA_PATIENT_BARCODE_FROM_SAMPLE_REGEX.matcher(sampleId); - if (tcgaSampleBarcodeMatcher.find()) { - return tcgaSampleBarcodeMatcher.group(1); - } - else { - // internal studies should have a patient id column - int patientIdIndex = findAttributeColumnIndex(PATIENT_ID_COLUMN_NAME, columnAttrs); - if (patientIdIndex >= 0) { - return fields[patientIdIndex]; - } - // sample and patient id are the same - else { - return sampleId; - } - } - } - - private boolean validPatientId(String patientId) - { - return (patientId != null && !patientId.isEmpty()); - } - - private boolean validSampleId(String sampleId) - { - return (sampleId != null && !sampleId.isEmpty()); - } - - private void addDatum(int internalId, String attrId, String attrVal, String attrType) throws Exception - { - // if bulk loading is ever turned off, we need to check if - // attribute value exists and if so, perfom an update - if (attrType.equals(ClinicalAttribute.PATIENT_ATTRIBUTE)) { - numPatientSpecificClinicalAttributesAdded++; - // add prefix for OS or DFS attributes - if (SurvivalStatusAttributes.has(attrId)) { - DaoClinicalData.addPatientDatum(internalId, attrId, SurvivalAttributeUtil.getModifiedAttributeValue(attrVal.trim())); - } else { - DaoClinicalData.addPatientDatum(internalId, attrId, attrVal.trim()); - } - } - else { - numSampleSpecificClinicalAttributesAdded++; - DaoClinicalData.addSampleDatum(internalId, attrId, attrVal.trim()); - } - } - - public int getNumSampleSpecificClinicalAttributesAdded() { - return numSampleSpecificClinicalAttributesAdded; - } - - public int getNumPatientSpecificClinicalAttributesAdded() { - return numPatientSpecificClinicalAttributesAdded; - } - - public int getNumEmptyClinicalAttributesSkipped() { - return numEmptyClinicalAttributesSkipped; - } - - public int getNumSamplesProcessed() { - return numSamplesProcessed; - } - - /** - * The type of attributes found in the file. Basically the - * type of import running for this instance. Can be one of - * AttributeTypes. - * - * @return - */ - public AttributeTypes getAttributesType() { - return attributesType; - } - - /** - * Imports clinical data and clinical attributes (from the worksheet) - */ - public void run() { - try { - String progName = "importClinicalData"; - String description = "Import clinical files."; - // usage: --data --meta --loadMode [directLoad|bulkLoad (default)] [--noprogress] - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts( "data", - "profile data file" ).withRequiredArg().describedAs( "data_file.txt" ).ofType( String.class ); - OptionSpec meta = parser.accepts( "meta", - "meta (description) file" ).withOptionalArg().describedAs( "meta_file.txt" ).ofType( String.class ); - OptionSpec study = parser.accepts("study", - "cancer study id").withOptionalArg().describedAs("study").ofType(String.class); - OptionSpec attributeFlag = parser.accepts("a", - "(deprecated) Flag for using MIXED_ATTRIBUTES").withOptionalArg().describedAs("a").ofType(String.class); - OptionSpec relaxedFlag = parser.accepts("r", - "(not recommended) Flag for relaxed mode, determining how to handle detected data harmonization problems in the same study").withOptionalArg().describedAs("r").ofType(String.class); - parser.accepts( "loadMode", "direct (per record) or bulk load of data" ) - .withOptionalArg().describedAs( "[directLoad|bulkLoad (default)]" ).ofType( String.class ); - parser.accepts("noprogress", "this option can be given to avoid the messages regarding memory usage and % complete"); - - OptionSet options = null; - try { - options = parser.parse( args ); - } catch (OptionException e) { - throw new UsageException( - progName, description, parser, - e.getMessage()); - } - File clinical_f = null; - if( options.has( data ) ){ - clinical_f = new File( options.valueOf( data ) ); - } else { - throw new UsageException( - progName, description, parser, - "'data' argument required."); - } - String attributesDatatype = null; - boolean relaxed = false; - String cancerStudyStableId = null; - if( options.has ( study ) ) - { - cancerStudyStableId = options.valueOf(study); - } - if( options.has ( meta ) ) - { - properties = new TrimmedProperties(); - properties.load(new FileInputStream(options.valueOf(meta))); - attributesDatatype = properties.getProperty("datatype"); - cancerStudyStableId = properties.getProperty("cancer_study_identifier"); - } - if( options.has ( attributeFlag ) ) - { - attributesDatatype = "MIXED_ATTRIBUTES"; - } - if( options.has ( relaxedFlag ) ) - { - relaxed = true; - - } - SpringUtil.initDataSource(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId); - if (cancerStudy == null) { - throw new IllegalArgumentException("Unknown cancer study: " + cancerStudyStableId); - } - ProgressMonitor.setCurrentMessage("Reading data from: " + clinical_f.getAbsolutePath()); - int numLines = FileUtil.getNumLines(clinical_f); - ProgressMonitor.setCurrentMessage(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - - setFile(cancerStudy, clinical_f, attributesDatatype, relaxed); - importData(); - - if (getAttributesType() == ImportClinicalData.AttributeTypes.PATIENT_ATTRIBUTES || - getAttributesType() == ImportClinicalData.AttributeTypes.MIXED_ATTRIBUTES) { - ProgressMonitor.setCurrentMessage("Total number of patient specific clinical attributes added: " - + getNumPatientSpecificClinicalAttributesAdded()); - } - if (getAttributesType() == ImportClinicalData.AttributeTypes.SAMPLE_ATTRIBUTES || - getAttributesType() == ImportClinicalData.AttributeTypes.MIXED_ATTRIBUTES) { - ProgressMonitor.setCurrentMessage("Total number of sample specific clinical attributes added: " - + getNumSampleSpecificClinicalAttributesAdded()); - ProgressMonitor.setCurrentMessage("Total number of samples processed: " - + getNumSamplesProcessed()); - } - ProgressMonitor.setCurrentMessage("Total number of attribute values skipped because of empty value: " - + getNumEmptyClinicalAttributesSkipped()); - if (getAttributesType() == ImportClinicalData.AttributeTypes.SAMPLE_ATTRIBUTES && - (getNumSampleSpecificClinicalAttributesAdded() + getNumSamplesProcessed()) == 0) { - //should not occur: - throw new RuntimeException("No data was added. " + - "Please check your file format and try again."); - } - if (getAttributesType() == ImportClinicalData.AttributeTypes.PATIENT_ATTRIBUTES && - getNumPatientSpecificClinicalAttributesAdded() == 0) { - //could occur if patient clinical file is given with only PATIENT_ID column: - throw new RuntimeException("No data was added. " + - "Please check your file format and try again. If you only have sample clinical data, then a patients file with only PATIENT_ID column is not required."); - } - //backward compatible check (TODO - remove this later): - if (getAttributesType() == ImportClinicalData.AttributeTypes.MIXED_ATTRIBUTES && - (getNumPatientSpecificClinicalAttributesAdded() + getNumSampleSpecificClinicalAttributesAdded()) == 0) { - //should not occur: - throw new RuntimeException("No data was added. " + - "Please check your data and try again."); - } - - if (getAttributesType() == ImportClinicalData.AttributeTypes.PATIENT_ATTRIBUTES && - getNumPatientSpecificClinicalAttributesAdded() == 0) { - //could occur if patient clinical file is given with only PATIENT_ID column: - throw new RuntimeException("No data was added. " + - "Please check your file format and try again. If you only have sample clinical data, then a patients file with only PATIENT_ID column is not required."); - } - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportClinicalData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportClinicalData(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCnaDiscreteLongData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCnaDiscreteLongData.java deleted file mode 100644 index af67c17a288..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCnaDiscreteLongData.java +++ /dev/null @@ -1,351 +0,0 @@ -/* - * Copyright (c) 2018 - 2022 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ -package org.mskcc.cbio.portal.scripts; - -import com.google.common.base.*; -import com.google.common.collect.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -import java.io.*; -import java.util.Optional; -import java.util.*; -import java.util.stream.*; - -import static com.google.common.collect.Lists.*; -import static java.lang.String.*; -import static org.cbioportal.model.MolecularProfile.DataType.DISCRETE; - -public class ImportCnaDiscreteLongData { - - private final File cnaFile; - private final int geneticProfileId; - private final GeneticAlterationImporter geneticAlterationGeneImporter; - private String genePanel; - private final DaoGeneOptimized daoGene; - private CnaUtil cnaUtil; - private Set existingCnaEvents = new HashSet<>(); - private int samplesSkipped = 0; - private Set namespaces; - - private final ArrayList sampleIdGeneticProfileIds = new ArrayList<>(); - - public ImportCnaDiscreteLongData( - File cnaFile, - int geneticProfileId, - String genePanel, - DaoGeneOptimized daoGene, - DaoGeneticAlteration daoGeneticAlteration, - Set namespaces - ) { - this.namespaces = namespaces; - this.cnaFile = cnaFile; - this.geneticProfileId = geneticProfileId; - this.genePanel = genePanel; - this.daoGene = daoGene; - this.geneticAlterationGeneImporter = new GeneticAlterationImporter(geneticProfileId, daoGeneticAlteration); - } - - public void importData() throws Exception { - FileReader reader = new FileReader(this.cnaFile); - BufferedReader buf = new BufferedReader(reader); - - // Pass first line with headers to util: - String line = buf.readLine(); - int lineIndex = 1; - String[] headerParts = line.split("\t", -1); - this.cnaUtil = new CnaUtil(headerParts, this.namespaces); - - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - - boolean isDiscretizedCnaProfile = geneticProfile != null - && geneticProfile.getGeneticAlterationType() == GeneticAlterationType.COPY_NUMBER_ALTERATION - && geneticProfile.showProfileInAnalysisTab(); - - if (isDiscretizedCnaProfile) { - existingCnaEvents.addAll(DaoCnaEvent.getAllCnaEvents()); - MySQLbulkLoader.bulkLoadOn(); - } - - CnaImportData toImport = new CnaImportData(); - - while ((line = buf.readLine()) != null) { - lineIndex++; - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - this.extractDataToImport(geneticProfile, line, lineIndex, toImport); - } - - DaoGeneticProfileSamples.addGeneticProfileSamples( - geneticProfileId, - newArrayList(toImport.eventsTable.columnKeySet()) - ); - - for (Long entrezId : toImport.eventsTable.rowKeySet()) { - boolean added = storeGeneticAlterations(toImport, entrezId); - if (added) { - storeCnaEvents(toImport, entrezId); - } else { - ProgressMonitor.logWarning("Values not added to gene with entrezId: " + entrezId + ". Skip creation of cna events."); - } - } - - // Once the CNA import is done, update DISCRETE_LONG input datatype into resulting DISCRETE datatype: - geneticProfile.setDatatype(DISCRETE.name()); - DaoGeneticProfile.updateDatatype(geneticProfile.getGeneticProfileId(), geneticProfile.getDatatype()); - - ProgressMonitor.setCurrentMessage(" --> total number of samples skipped (normal samples): " + getSamplesSkipped()); - buf.close(); - MySQLbulkLoader.flushAll(); - } - - /** - * First we collect all the events - * to import all events related to a single gene in one query: - */ - public void extractDataToImport( - GeneticProfile geneticProfile, - String line, - int lineIndex, - CnaImportData importContainer - ) throws Exception { - boolean hasData = !line.startsWith("#") && line.trim().length() > 0; - if (!hasData) { - return; - } - String[] lineParts = line.split("\t", -1); - CanonicalGene gene = this.getGene(cnaUtil.getEntrezSymbol(lineParts), lineParts, cnaUtil); - importContainer.genes.add(gene); - - if (gene == null) { - ProgressMonitor.logWarning("Ignoring line with no Hugo_Symbol and no Entrez_Id"); - return; - } - - int cancerStudyId = geneticProfile.getCancerStudyId(); - - String sampleIdStr = cnaUtil.getSampleIdStr(lineParts); - Sample sample = findSample(sampleIdStr, cancerStudyId); - createSampleProfile(sample); - - long entrezId = gene.getEntrezGeneId(); - int sampleId = sample.getInternalId(); - CnaEventImportData eventContainer = new CnaEventImportData(); - eventContainer.cnaEvent = cnaUtil.createEvent(geneticProfile, sampleId, entrezId, lineParts); - - Table geneBySampleEventTable = importContainer.eventsTable; - - if (!geneBySampleEventTable.contains(entrezId, sample.getInternalId())) { - geneBySampleEventTable.put(entrezId, sampleId, eventContainer); - } else { - ProgressMonitor.logWarning(format("Skipping line %d with duplicate gene %d and sample %d", lineIndex, entrezId, sampleId)); - } - - } - - /** - * Store all cna events related to a single gene - */ - private void storeCnaEvents(CnaImportData toImport, Long entrezId) throws DaoException { - List events = toImport.eventsTable - .row(entrezId) - .values() - .stream() - .filter(v -> v.cnaEvent != null) - .map(v -> v.cnaEvent) - .collect(Collectors.toList()); - CnaUtil.storeCnaEvents(existingCnaEvents, events); - } - - /** - * Store all events related to a single gene - */ - private boolean storeGeneticAlterations(CnaImportData toImport, Long entrezId) throws DaoException { - String[] values = toImport.eventsTable - .columnKeySet() - .stream() - .map(sample -> { - CnaEventImportData event = toImport - .eventsTable - .get(entrezId, sample); - if (event == null) { - return ""; - } - return "" + event - .cnaEvent - .getAlteration() - .getCode(); - }) - .toArray(String[]::new); - - Optional gene = toImport.genes - .stream() - .filter(g -> g != null && g.getEntrezGeneId() == entrezId) - .findFirst(); - - if (!gene.isPresent()) { - ProgressMonitor.logWarning("No gene found for entrezId: " + entrezId); - return false; - } - - String geneSymbol = !Strings.isNullOrEmpty(gene.get().getHugoGeneSymbolAllCaps()) - ? gene.get().getHugoGeneSymbolAllCaps() - : "" + entrezId; - - return this.geneticAlterationGeneImporter.store(values, gene.get(), geneSymbol); - } - - /** - * Try to find gene by entrez ID, or else by hugo ID - * @return null when no gene could be found - */ - private CanonicalGene getGene( - long entrez, - String[] parts, - CnaUtil util - ) { - - String hugoSymbol = util.getHugoSymbol(parts); - - if (Strings.isNullOrEmpty(hugoSymbol) && entrez == 0) { - return null; - } - - // 1. try entrez: - if (entrez != 0) { - CanonicalGene foundByEntrez = this.daoGene.getGene(entrez); - if (foundByEntrez != null) { - return foundByEntrez; - } - } - - // 2. try hugo: - if (!Strings.isNullOrEmpty(hugoSymbol)) { - if (hugoSymbol.contains("///") || hugoSymbol.contains("---")) { - // Ignore gene IDs separated by ///. This indicates that - // the line contains information regarding multiple genes, and - // we cannot currently handle this. - // Also, ignore gene IDs that are specified as ---. This indicates - // the line contains information regarding an unknown gene, and - // we cannot currently handle this. - ProgressMonitor.logWarning("Ignoring gene ID: " + hugoSymbol); - return null; - } - int ix = hugoSymbol.indexOf("|"); - if (ix > 0) { - hugoSymbol = hugoSymbol.substring(0, ix); - } - List genes = daoGene.getGene(hugoSymbol, true); - if (genes.size() > 1) { - throw new IllegalStateException("Found multiple genes for Hugo symbol " + hugoSymbol + " while importing cna"); - } - return genes.get(0); - } - ProgressMonitor.logWarning("Entrez_Id " + entrez + " not found. Record will be skipped for this gene."); - return null; - } - - /** - * Find sample and create sample profile when needed - * - * @return boolean created or not - */ - public boolean createSampleProfile( - Sample sample - ) throws Exception { - boolean inDatabase = DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId); - Integer genePanelID = (genePanel == null) ? null : GeneticProfileUtil.getGenePanelId(genePanel); - SampleIdGeneticProfileId toCreate = new SampleIdGeneticProfileId(sample.getInternalId(), geneticProfileId); - boolean isQueued = this.sampleIdGeneticProfileIds.contains(toCreate); - if (!inDatabase && !isQueued) { - DaoSampleProfile.addSampleProfile(sample.getInternalId(), geneticProfileId, genePanelID); - this.sampleIdGeneticProfileIds.add(toCreate); - return true; - } - return false; - } - - - private static class SampleIdGeneticProfileId { - public int sampleId; - public int geneticProfileId; - - public SampleIdGeneticProfileId(int sampleId, int geneticProfileId) { - this.sampleId = sampleId; - this.geneticProfileId = geneticProfileId; - } - - @Override - public boolean equals(Object o) { - if (this == o) - return true; - if (o == null || getClass() != o.getClass()) - return false; - - SampleIdGeneticProfileId that = (SampleIdGeneticProfileId) o; - return sampleId == that.sampleId - && geneticProfileId == that.geneticProfileId; - } - } - - /** - * Find sample and create sample profile when needed - */ - public Sample findSample( - String sampleId, - int cancerStudyId - ) throws Exception { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId( - cancerStudyId, - StableIdUtil.getSampleId(sampleId) - ); - // can be null in case of 'normal' sample, throw exception if not 'normal' and sample not found in db - if (sample == null) { - if (StableIdUtil.isNormal(sampleId)) { - samplesSkipped++; - return null; - } else { - throw new RuntimeException("Unknown sample id '" + StableIdUtil.getSampleId(sampleId)); - } - } - return sample; - } - - private class CnaImportData { - // Entrez ID x Sample ID table: - public Table eventsTable = HashBasedTable.create(); - public Set genes = new HashSet<>(); - } - - private class CnaEventImportData { - public int line; - public CnaEvent cnaEvent; - public String geneSymbol; - } - - public int getSamplesSkipped() { - return samplesSkipped; - } -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCopyNumberSegmentData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCopyNumberSegmentData.java deleted file mode 100644 index 1c876a75530..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCopyNumberSegmentData.java +++ /dev/null @@ -1,208 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.*; - -import joptsimple.*; - -import java.io.*; -import java.math.BigDecimal; -import java.util.*; - -/** - * Import Segment data into database. - * @author jj - */ -public class ImportCopyNumberSegmentData extends ConsoleRunnable { - - private int entriesSkipped; - - private void importData(File file, int cancerStudyId) throws IOException, DaoException { - MySQLbulkLoader.bulkLoadOn(); - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - try { - String line = buf.readLine(); // skip header line - long segId = DaoCopyNumberSegment.getLargestId(); - while ((line=buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - - String[] strs = line.split("\t"); - if (strs.length<6) { - System.err.println("wrong format: "+line); - } - - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId); - String chrom = strs[1].trim(); - //validate in same way as GistitReader: - ValidationUtils.validateChromosome(chrom); - - long start = Double.valueOf(strs[2]).longValue(); - long end = Double.valueOf(strs[3]).longValue(); - if (start >= end) { - //workaround to skip with warning, according to https://github.com/cBioPortal/cbioportal/issues/839#issuecomment-203452415 - ProgressMonitor.logWarning("Start position of segment is not lower than end position. Skipping this entry."); - entriesSkipped++; - continue; - } - int numProbes = new BigDecimal((strs[4])).intValue(); - double segMean = Double.parseDouble(strs[5]); - - String sampleId = StableIdUtil.getSampleId(strs[0]); - Sample s = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId); - if (s == null) { - if (StableIdUtil.isNormal(sampleId)) { - entriesSkipped++; - continue; - } - else { - //this likely will not be reached since samples are added on the fly above if not known to database - throw new RuntimeException("Unknown sample id '" + sampleId + "' found in seg file: " + file.getCanonicalPath()); - } - } - CopyNumberSegment cns = new CopyNumberSegment(cancerStudyId, s.getInternalId(), chrom, start, end, numProbes, segMean); - cns.setSegId(++segId); - DaoCopyNumberSegment.addCopyNumberSegment(cns); - } - MySQLbulkLoader.flushAll(); - } - finally { - buf.close(); - } - } - - public void run() { - try { - String description = "Import 'segment data' files"; - - OptionSet options = ConsoleUtil.parseStandardDataAndMetaOptions(args, description, true); - String dataFile = (String) options.valueOf("data"); - File descriptorFile = new File((String) options.valueOf("meta")); - - Properties properties = new Properties(); - properties.load(new FileInputStream(descriptorFile)); - - ProgressMonitor.setCurrentMessage("Reading data from: " + dataFile); - - SpringUtil.initDataSource(); - CancerStudy cancerStudy = getCancerStudy(properties); - - if (segmentDataExistsForCancerStudy(cancerStudy)) { - throw new IllegalArgumentException("Seg data for cancer study " + cancerStudy.getCancerStudyStableId() + " has already been imported: " + dataFile); - } - - importCopyNumberSegmentFileMetadata(cancerStudy, properties); - importCopyNumberSegmentFileData(cancerStudy, dataFile); - DaoCopyNumberSegment.createFractionGenomeAlteredClinicalData(cancerStudy.getInternalId()); - if( MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - } catch (RuntimeException e) { - throw e; - } catch (IOException|DaoException e) { - throw new RuntimeException(e); - } - } - - private static CancerStudy getCancerStudy(Properties properties) throws DaoException { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(properties.getProperty("cancer_study_identifier").trim()); - if (cancerStudy == null) { - throw new RuntimeException("Unknown cancer study: " + properties.getProperty("cancer_study_identifier").trim()); - } - return cancerStudy; - } - - private static boolean segmentDataExistsForCancerStudy(CancerStudy cancerStudy) throws DaoException { - return (DaoCopyNumberSegment.segmentDataExistForCancerStudy(cancerStudy.getInternalId())); - } - - private static void importCopyNumberSegmentFileMetadata(CancerStudy cancerStudy, Properties properties) throws DaoException { - CopyNumberSegmentFile copyNumSegFile = new CopyNumberSegmentFile(); - copyNumSegFile.cancerStudyId = cancerStudy.getInternalId(); - String referenceGenomeId = properties.getProperty("reference_genome_id").trim(); - String referenceGenome = cancerStudy.getReferenceGenome(); - if (referenceGenome == null) { - referenceGenome = ReferenceGenome.HOMO_SAPIENS_DEFAULT_GENOME_NAME; - } - if (!referenceGenomeId.equalsIgnoreCase(referenceGenome)) { - ProgressMonitor.setCurrentMessage(" Genome Build Name does not match, expecting " - + cancerStudy.getReferenceGenome()); - } - copyNumSegFile.referenceGenomeId = getRefGenId(referenceGenomeId); - copyNumSegFile.description = properties.getProperty("description").trim(); - copyNumSegFile.filename = properties.getProperty("data_filename").trim(); - DaoCopyNumberSegmentFile.addCopyNumberSegmentFile(copyNumSegFile); - } - - private void importCopyNumberSegmentFileData(CancerStudy cancerStudy, String dataFilename) throws IOException, DaoException { - File file = new File(dataFilename); - int numLines = FileUtil.getNumLines(file); - ProgressMonitor.setCurrentMessage(" --> total number of data lines: " + (numLines-1)); - ProgressMonitor.setMaxValue(numLines); - entriesSkipped = 0; - importData(file, cancerStudy.getInternalId()); - ProgressMonitor.setCurrentMessage(" --> total number of entries skipped: " + entriesSkipped); - } - - private static CopyNumberSegmentFile.ReferenceGenomeId getRefGenId(String potentialRefGenId) { - if (CopyNumberSegmentFile.ReferenceGenomeId.has(potentialRefGenId)) { - return CopyNumberSegmentFile.ReferenceGenomeId.valueOf(potentialRefGenId); - } - else { - throw new RuntimeException ("Unknown reference genome id: " + potentialRefGenId); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportCopyNumberSegmentData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportCopyNumberSegmentData(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCosmicData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCosmicData.java deleted file mode 100644 index cea48b84b0d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportCosmicData.java +++ /dev/null @@ -1,197 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.*; -import org.springframework.util.Assert; - -import java.io.*; - -import java.util.HashMap; -import java.util.Map; -import java.util.regex.*; -import java.util.stream.IntStream; - -public class ImportCosmicData { - private File file; - - public ImportCosmicData(File file) { - this.file = file; - } - - private final static String geneEntryName = "GENE"; - private final static String strandEntryName = "STRAND"; - private final static String cdsEntryName = "CDS"; - private final static String aaEntryName = "AA"; - private final static String cntEntryName = "CNT"; - - public void importData() throws IOException, DaoException { - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - // Pattern: must have gene, strand, cds, aa and cnt in any order, with other strings possibly in between. - Pattern p = Pattern.compile("(?=.*GENE=[^;]+.*)(?=.*STRAND=(.).*)(?=.*CDS=[^;]+.*)(?=.*AA=p\\.[^;]+.*)(?=.*CNT=[0-9]+.*)"); - Pattern id_pat = Pattern.compile("(?=.*LEGACY_ID=[^;]+.*)"); - MySQLbulkLoader.bulkLoadOn(); - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - String line; - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#")) { - String parts[] = line.split("\t",-1); - if (parts.length<8) { - System.err.println("Wrong line in cosmic: "+line); - continue; - } - - String id = parts[2]; - String infoColumnValue = parts[7]; - if (!id.matches("COS(M|V)[0-9]+")) { - System.err.println("Wrong cosmic ID: "+id); - } else { - if (id.matches("COSM[0-9]+")) { //COSM can be taken as is - id = id.substring(4); - } else { //COSV does not map correctly, COSM still present in info-column - Matcher id_match = id_pat.matcher(infoColumnValue); - if (!id_match.find()) { - System.err.println("Cannot parse Legacy ID: "+line); - } - String id_items[] = infoColumnValue.split(";"); - for (String s: id_items) { - if (s.startsWith("LEGACY_ID=")) { - id = s.substring(14); - } - } - - } - } - - Matcher m = p.matcher(infoColumnValue); - if (m.find()) { - Map fieldValues = evaluateFieldValues(infoColumnValue); - - String gene = fieldValues.get(geneEntryName); - - if (gene.contains("_ENST")) { - gene = gene.substring(0,gene.indexOf("_ENST")); - } -// if (gene.contains("_HUMAN")) { -// gene = gene.substring(0,gene.indexOf("_HUMAN")); -// } - CanonicalGene canonicalGene = daoGeneOptimized.getNonAmbiguousGene(gene, true); - if (canonicalGene==null) { - System.err.println("Gene symbol in COSMIC not recognized: "+gene); - continue; - } - - String aa = fieldValues.get(aaEntryName); - String keyword = MutationKeywordUtils.guessCosmicKeyword(aa); - if (keyword == null) { - System.out.println("Mutation keyword in COSMIC not recognized: "+aa); - continue; - } - - String count_field = fieldValues.get(cntEntryName); - int count = Integer.parseInt(count_field); - - CosmicMutationFrequency cmf = new CosmicMutationFrequency(id, - canonicalGene.getEntrezGeneId(), aa, gene + " " + keyword, count); - - cmf.setChr(parts[0]); - cmf.setStartPosition(Long.parseLong(parts[1])); - cmf.setReferenceAllele(parts[3]); - cmf.setTumorSeqAllele(parts[4]); - cmf.setStrand(fieldValues.get(strandEntryName)); - cmf.setCds(fieldValues.get(cdsEntryName)); - - DaoCosmicData.addCosmic(cmf); - } - } - } - buf.close(); - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - } - - private Map evaluateFieldValues(String infoColumnValue) { - String[] fields = infoColumnValue.split(";"); - HashMap fieldValues = new HashMap<>(); - IntStream.range(0, fields.length).forEach(index -> { - if (fields[index].startsWith("GENE=")) - fieldValues.put(geneEntryName, removePrefix(fields[index])); - if (fields[index].startsWith("STRAND=")) - fieldValues.put(strandEntryName, removePrefix(fields[index])); - if (fields[index].startsWith("CDS=")) - fieldValues.put(cdsEntryName, removePrefix(fields[index])); - if (fields[index].startsWith("AA=")) - fieldValues.put(aaEntryName, removePrefix(fields[index])); - if (fields[index].startsWith("CNT=")) - fieldValues.put(cntEntryName, removePrefix(fields[index])); - }); - Assert.isTrue(fieldValues.keySet().size() == 5, "The value of one of the required fields could not be found."); - return fieldValues; - } - - private String removePrefix(String field) { - String[] elements = field.split("="); - String fieldName = elements[0]; - String fieldValue = elements[1]; - if (fieldName.equals("AA")) { - fieldValue = fieldValue.replaceAll("^p\\.", ""); - }; - return fieldValue; - } - - public static void main(String[] args) throws Exception { - if (args.length == 0) { - System.out.println("command line usage: importCosmicData.pl "); - return; - } - SpringUtil.initDataSource(); - DaoCosmicData.deleteAllRecords(); - ProgressMonitor.setConsoleMode(true); - - File file = new File(args[0]); - System.out.println("Reading data from: " + file.getAbsolutePath()); - int numLines = FileUtil.getNumLines(file); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportCosmicData parser = new ImportCosmicData(file); - parser.importData(); - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportDrugs.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportDrugs.java deleted file mode 100644 index a819b0de2bf..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportDrugs.java +++ /dev/null @@ -1,94 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.io.*; - -/** - * Command Line tool to import background drug information. - */ -public class ImportDrugs { - private File file; - private static final String NA = "N/A"; - - public ImportDrugs(File file) { - this.file = file; - } - - public void importData() throws IOException, DaoException { - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - while (line != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#") && line.trim().length() > 0) { - line = line.trim(); - String parts[] = line.split("\t"); - String geneSymbol = parts[0]; - String drugType = parts[1]; - String id = parts[2]; - - // Load up the specified genes from the master table - CanonicalGene gene = daoGene.getGene(geneSymbol); - - } - line = buf.readLine(); - } - } - - public static void main(String[] args) throws Exception { - if (args.length == 0) { - System.out.println("command line usage: importDrugs.pl "); - return; - } - ProgressMonitor.setConsoleMode(true); - SpringUtil.initDataSource(); - - File file = new File(args[0]); - System.out.println("Reading drug data from: " + file.getAbsolutePath()); - int numLines = FileUtil.getNumLines(file); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportDrugs parser = new ImportDrugs(file); - parser.importData(); - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportExtendedMutationData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportExtendedMutationData.java deleted file mode 100644 index 39dd97c30ef..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportExtendedMutationData.java +++ /dev/null @@ -1,615 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.ObjectMapper; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.model.ExtendedMutation.MutationEvent; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.maf.*; - -import org.apache.commons.lang3.StringUtils; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; -import java.util.*; -import java.util.regex.*; - -/** - * Import an extended mutation file. - * Columns may be in any order. - *

- * @author Ethan Cerami - *
- * @author Arthur Goldberg goldberg@cbio.mskcc.org - *
- * @author Selcuk Onur Sumer - */ -public class ImportExtendedMutationData{ - - private File mutationFile; - private int geneticProfileId; - private boolean swissprotIsAccession; - private MutationFilter myMutationFilter; - private int entriesSkipped = 0; - private int samplesSkipped = 0; - private Set sampleSet = new HashSet(); - private Set geneSet = new HashSet(); - private String genePanel; - private Set filteredMutations = new HashSet(); - private Set namespaces = new HashSet(); - private Pattern SEQUENCE_SAMPLES_REGEX = Pattern.compile("^.*sequenced_samples:(.*)$"); - private final String ASCN_NAMESPACE = "ASCN"; - - /** - * construct an ImportExtendedMutationData. - * Filter mutations according to the no argument MutationFilter(). - */ - public ImportExtendedMutationData(File mutationFile, int geneticProfileId, String genePanel, Set filteredMutations, Set namespaces) { - this.mutationFile = mutationFile; - this.geneticProfileId = geneticProfileId; - this.swissprotIsAccession = false; - this.genePanel = genePanel; - this.filteredMutations = filteredMutations; - - // create default MutationFilter - myMutationFilter = new MutationFilter( ); - this.namespaces = namespaces; - } - - public ImportExtendedMutationData(File mutationFile, int geneticProfileId, String genePanel) { - this(mutationFile, geneticProfileId, genePanel, null, null); - } - - /** - * Turns parsing the SWISSPROT column as an accession on or off again. - * - * If off, the column will be parsed as the name (formerly ID). - * - * @param swissprotIsAccession whether to parse the column as an accession - */ - public void setSwissprotIsAccession(boolean swissprotIsAccession) { - this.swissprotIsAccession = swissprotIsAccession; - } - - public void importData() throws IOException, DaoException { - MySQLbulkLoader.bulkLoadOn(); - - HashSet sequencedCaseSet = new HashSet(); - - Map existingEvents = new HashMap(); - Set newEvents = new HashSet(); - - Map mutations = new HashMap(); - long mutationEventId = DaoMutation.getLargestMutationEventId(); - - List ascnRecords = new ArrayList(); - - FileReader reader = new FileReader(mutationFile); - BufferedReader buf = new BufferedReader(reader); - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - // process MAF header and return line immediately following it - String line = processMAFHeader(buf); - - MafUtil mafUtil = new MafUtil(line, namespaces); - - boolean fileHasOMAData = false; - - if (mafUtil.getMaFImpactIndex() >= 0) { - // fail gracefully if a non-essential column is missing - // e.g. if there is no MA_link.var column, we assume that the value is NA and insert it as such - fileHasOMAData = true; - ProgressMonitor.setCurrentMessage(" --> OMA Scores Column Number: " - + mafUtil.getMaFImpactIndex()); - } - else { - fileHasOMAData = false; - } - - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByInternalId(geneticProfile.getCancerStudyId()); - String referenceGenome = cancerStudy.getReferenceGenome(); - if (referenceGenome == null) { - referenceGenome = GlobalProperties.getReferenceGenomeName(); - } - String genomeBuildName = DaoReferenceGenome.getReferenceGenomeByGenomeName(referenceGenome).getBuildName(); - - while((line=buf.readLine()) != null) - { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - - if( !line.startsWith("#") && line.trim().length() > 0) - { - String[] parts = line.split("\t", -1 ); // the -1 keeps trailing empty strings; see JavaDoc for String - MafRecord record = mafUtil.parseRecord(line); - - if (!record.getNcbiBuild().equalsIgnoreCase(genomeBuildName)) { - ProgressMonitor.logWarning("Genome Build Name does not match, expecting " + genomeBuildName); - } - // process case id - String barCode = record.getTumorSampleID(); - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(geneticProfile.getCancerStudyId(), - StableIdUtil.getSampleId(barCode)); - // can be null in case of 'normal' sample: - // (if data files are run through validator, this condition should be minimal) - if (sample == null) { - if (StableIdUtil.isNormal(barCode)) { - //if new sample: - if (sampleSet.add(barCode)) - samplesSkipped++; - continue; - } - else { - throw new RuntimeException("Unknown sample id '" + StableIdUtil.getSampleId(barCode) + "' found in MAF file: " + this.mutationFile.getCanonicalPath()); - } - } - - String validationStatus = record.getValidationStatus(); - - if (validationStatus == null || - validationStatus.equalsIgnoreCase("Wildtype")) - { - ProgressMonitor.logWarning("Skipping entry with Validation_Status: Wildtype"); - entriesSkipped++; - continue; - } - - String chr = DaoGeneOptimized.normalizeChr(record.getChr().toUpperCase()); - if (chr==null) { - ProgressMonitor.logWarning("Skipping entry with chromosome value: " + record.getChr()); - entriesSkipped++; - continue; - } - record.setChr(chr); - - if (record.getStartPosition() < 0) - record.setStartPosition(0); - - if (record.getEndPosition() < 0) - record.setEndPosition(0); - - String mutationType, - proteinChange, - aaChange, - codonChange, - refseqMrnaId, - uniprotAccession; - - int proteinPosStart, - proteinPosEnd; - - // determine whether to use canonical or best effect transcript - - // try canonical first - if (ExtendedMutationUtil.isAcceptableMutation(record.getVariantClassification())) - { - mutationType = record.getVariantClassification(); - } - // if not acceptable either, use the default value - else - { - mutationType = ExtendedMutationUtil.getMutationType(record); - } - - // skip RNA mutations - if (mutationType != null && mutationType.equalsIgnoreCase("rna")) - { - ProgressMonitor.logWarning("Skipping entry with mutation type: RNA"); - entriesSkipped++; - continue; - } - - proteinChange = ExtendedMutationUtil.getProteinChange(parts, record); - //proteinChange = record.getProteinChange(); - aaChange = record.getAminoAcidChange(); - codonChange = record.getCodons(); - refseqMrnaId = record.getRefSeq(); - //always uniprot accession - uniprotAccession = record.getSwissprot(); - - proteinPosStart = ExtendedMutationUtil.getProteinPosStart( - record.getProteinPosition(), proteinChange); - proteinPosEnd = ExtendedMutationUtil.getProteinPosEnd( - record.getProteinPosition(), proteinChange); - - // Assume we are dealing with Entrez Gene Ids (this is the best / most stable option) - String geneSymbol = record.getHugoGeneSymbol(); - String entrezIdString = record.getGivenEntrezGeneId(); - - CanonicalGene gene = null; - // try to parse entrez if it is not empty nor 0: - if (!(entrezIdString.isEmpty() || - entrezIdString.equals("0"))) { - Long entrezGeneId; - try { - entrezGeneId = Long.parseLong(entrezIdString); - } catch (NumberFormatException e) { - entrezGeneId = null; - } - //non numeric values or negative values should not be allowed: - if (entrezGeneId == null || entrezGeneId < 0) { - ProgressMonitor.logWarning( - "Ignoring line with invalid Entrez_Id " + - entrezIdString); - entriesSkipped++; - continue; - } else { - gene = daoGene.getGene(entrezGeneId); - if (gene == null) { - //skip if not in DB: - ProgressMonitor.logWarning( - "Entrez gene ID " + entrezGeneId + - " not found. Record will be skipped."); - entriesSkipped++; - continue; - } - } - } - - // If Entrez Gene ID Fails, try Symbol. - if (gene == null && - !(geneSymbol.equals("") || - geneSymbol.equals("Unknown"))) { - gene = daoGene.getNonAmbiguousGene(geneSymbol, true); - } - - // assume symbol=Unknown and entrez=0 (or missing Entrez column) to imply an - // intergenic, irrespective of what the column Variant_Classification says - if (geneSymbol.equals("Unknown") && - (entrezIdString.equals("0") || mafUtil.getEntrezGeneIdIndex() == -1)) { - // give extra warning if mutationType is something different from IGR: - if (mutationType != null && - !mutationType.equalsIgnoreCase("IGR")) { - ProgressMonitor.logWarning( - "Treating mutation with gene symbol 'Unknown' " + - (mafUtil.getEntrezGeneIdIndex() == -1 ? "" : "and Entrez gene ID 0") + " as intergenic ('IGR') " + - "instead of '" + mutationType + "'. Entry filtered/skipped."); - } - // treat as IGR: - myMutationFilter.decisions++; - myMutationFilter.addRejectedVariant(myMutationFilter.rejectionMap, "IGR"); - // skip entry: - entriesSkipped++; - continue; - } - - // skip the record if a gene was expected but not identified - if (gene == null) { - ProgressMonitor.logWarning( - "Ambiguous or missing gene: " + geneSymbol + - " ["+ record.getGivenEntrezGeneId() + - "] or ambiguous alias. Ignoring it " + - "and all mutation data associated with it!"); - entriesSkipped++; - continue; - } else { - ExtendedMutation mutation = new ExtendedMutation(); - - mutation.setGeneticProfileId(geneticProfileId); - mutation.setSampleId(sample.getInternalId()); - mutation.setGene(gene); - mutation.setSequencingCenter(record.getCenter()); - mutation.setSequencer(record.getSequencer()); - mutation.setProteinChange(proteinChange); - mutation.setAminoAcidChange(aaChange); - mutation.setMutationType(mutationType); - mutation.setChr(record.getChr()); - mutation.setStartPosition(record.getStartPosition()); - mutation.setEndPosition(record.getEndPosition()); - mutation.setValidationStatus(record.getValidationStatus()); - mutation.setMutationStatus(record.getMutationStatus()); - mutation.setNcbiBuild(record.getNcbiBuild()); - mutation.setStrand(record.getStrand()); - mutation.setVariantType(record.getVariantType()); - mutation.setAllele(record.getTumorSeqAllele1(), record.getTumorSeqAllele2(), record.getReferenceAllele()); - // log whether tumor seq allele is empty (failed to resolve tumor seq allele because of invalid data values) - if (mutation.getTumorSeqAllele().isEmpty()) { - ProgressMonitor.logWarning("Tumor allele could not be resolved for sample '" + sample.getStableId() + - "' (chr,start,end,ref,tum1,tum2) = (" + record.getChr() + "," + record.getStartPosition() + "," + - record.getEndPosition() + "," + record.getReferenceAllele() + "," + record.getTumorSeqAllele1() + - "," + record.getTumorSeqAllele2() + ")"); - } - mutation.setDbSnpRs(record.getDbSNP_RS()); - mutation.setDbSnpValStatus(record.getDbSnpValStatus()); - mutation.setMatchedNormSampleBarcode(record.getMatchedNormSampleBarcode()); - mutation.setMatchNormSeqAllele1(record.getMatchNormSeqAllele1()); - mutation.setMatchNormSeqAllele2(record.getMatchNormSeqAllele2()); - mutation.setTumorValidationAllele1(record.getTumorValidationAllele1()); - mutation.setTumorValidationAllele2(record.getTumorValidationAllele2()); - mutation.setMatchNormValidationAllele1(record.getMatchNormValidationAllele1()); - mutation.setMatchNormValidationAllele2(record.getMatchNormValidationAllele2()); - mutation.setVerificationStatus(record.getVerificationStatus()); - mutation.setSequencingPhase(record.getSequencingPhase()); - mutation.setSequenceSource(record.getSequenceSource()); - mutation.setValidationMethod(record.getValidationMethod()); - mutation.setScore(record.getScore()); - mutation.setBamFile(record.getBamFile()); - mutation.setTumorAltCount(ExtendedMutationUtil.getTumorAltCount(record)); - mutation.setTumorRefCount(ExtendedMutationUtil.getTumorRefCount(record)); - mutation.setNormalAltCount(ExtendedMutationUtil.getNormalAltCount(record)); - mutation.setNormalRefCount(ExtendedMutationUtil.getNormalRefCount(record)); - - // renamed the oncotator column names to mutation - mutation.setCodonChange(codonChange); - mutation.setRefseqMrnaId(refseqMrnaId); - mutation.setUniprotAccession(uniprotAccession); - mutation.setProteinPosStart(proteinPosStart); - mutation.setProteinPosEnd(proteinPosEnd); - - mutation.setDriverFilter(record.getDriverFilter()); - mutation.setDriverFilterAnn(record.getDriverFilterAnn()); - mutation.setDriverTiersFilter(record.getDriverTiersFilter()); - mutation.setDriverTiersFilterAnn(record.getDriverTiersFilterAnn()); - - // TODO we don't use this info right now... - mutation.setCanonicalTranscript(true); - - AlleleSpecificCopyNumber ascn = null; - if (namespaces != null && namespaces.contains(ASCN_NAMESPACE)) { - Map ascnData = record.getNamespacesMap().remove(ASCN_NAMESPACE); - // The AlleleSpecificCopyNumber constructor will construct the record from - // the ascnData hashmap and the ascnData will simultaneously be removed from - // the record's namespaces map since it is going into its own table - ascn = new AlleleSpecificCopyNumber(ascnData); - } - mutation.setAnnotationJson( - mafUtil.getNamespaceColumnParser().writeValueAsString(record.getNamespacesMap()) - ); - - sequencedCaseSet.add(sample.getStableId()); - - // Filter out Mutations - if( myMutationFilter.acceptMutation( mutation, this.filteredMutations )) { - MutationEvent event = - existingEvents.containsKey(mutation.getEvent()) ? - existingEvents.get(mutation.getEvent()) : - DaoMutation.getMutationEvent(mutation.getEvent()); - if (event!=null) { - mutation.setEvent(event); - } else { - mutation.setMutationEventId(++mutationEventId); - existingEvents.put(mutation.getEvent(), mutation.getEvent()); - newEvents.add(mutation.getEvent()); - } - - ExtendedMutation exist = mutations.get(mutation); - if (exist!=null) { - ExtendedMutation merged = mergeMutationData(exist, mutation); - mutations.put(merged, merged); - } else { - mutations.put(mutation,mutation); - } - if(!sampleSet.contains(sample.getStableId())) { - addSampleProfileRecord(sample); - } - // update ascn object with mutation unique key details - if (ascn != null){ - ascn.updateAscnUniqueKeyDetails(mutation); - ascnRecords.add(ascn); - } - - //keep track: - sampleSet.add(sample.getStableId()); - geneSet.add(mutation.getEntrezGeneId()+""); - } - else { - entriesSkipped++; - } - } - } - } - - for (MutationEvent event : newEvents) { - try { - DaoMutation.addMutationEvent(event); - } catch (DaoException ex) { - throw ex; - } - } - - for (ExtendedMutation mutation : mutations.values()) { - try { - DaoMutation.addMutation(mutation,false); - } catch (DaoException ex) { - throw ex; - } - } - - for (AlleleSpecificCopyNumber ascn : ascnRecords) { - try { - DaoAlleleSpecificCopyNumber.addAlleleSpecificCopyNumber(ascn); - } catch (DaoException ex) { - throw ex; - } - } - - if( MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - // run sanity check on `mutation_event` to determine whether duplicate - // events were introduced during current import - if (DaoMutation.hasDuplicateMutationEvents()) { - throw new DaoException("Duplicate mutation events were detected during this import. Aborting..."); - } - - /* - * At MSKCC there are some MUTATION_UNCALLED - * profiles that shouldn't be included when determining the number of - * mutations for a sample - */ - if (geneticProfile.getGeneticAlterationType().equals(GeneticAlterationType.MUTATION_EXTENDED)) { - DaoMutation.createMutationCountClinicalData(geneticProfile); - } - // the mutation count by keyword is on a per genetic profile basis so - // fine to calculate for any genetic profile - ProgressMonitor.setCurrentMessage("Calculating mutation counts by keyword..."); - DaoMutation.calculateMutationCountByKeyword(geneticProfileId); - - if( MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - - if (entriesSkipped > 0) { - ProgressMonitor.setCurrentMessage(" --> total number of data entries skipped (see table below): " + entriesSkipped); - } - ProgressMonitor.setCurrentMessage(" --> total number of samples: " + sampleSet.size()); - if (samplesSkipped > 0) { - ProgressMonitor.setCurrentMessage(" --> total number of samples skipped (normal samples): " + samplesSkipped); - } - ProgressMonitor.setCurrentMessage(" --> total number of genes for which one or more mutation events were stored: " + geneSet.size()); - - ProgressMonitor.setCurrentMessage("Filtering table:\n-----------------"); - ProgressMonitor.setCurrentMessage(myMutationFilter.getStatistics() ); - } - - /** - * merge the current mutation - * @return - */ - private ExtendedMutation mergeMutationData(ExtendedMutation mut1, ExtendedMutation mut2) { - ExtendedMutation ret = mut1; - if (!mut1.getMatchedNormSampleBarcode().equalsIgnoreCase(mut2.getMatchedNormSampleBarcode())) { - if (mut2.getMatchedNormSampleBarcode().matches("TCGA-..-....-10.*")) { - // select blood normal if available - ret = mut2; - } - } else if (!mut1.getValidationStatus().equalsIgnoreCase(mut2.getValidationStatus())) { - if (mut2.getValidationStatus().equalsIgnoreCase("Valid") || - mut2.getValidationStatus().equalsIgnoreCase("VALIDATED")) { - // select validated mutations - ret = mut2; - } - } else if (!mut1.getMutationStatus().equalsIgnoreCase(mut2.getMutationStatus())) { - if (mut2.getMutationStatus().equalsIgnoreCase("Germline")) { - // select germline over somatic - ret = mut2; - } else if (mut2.getMutationStatus().equalsIgnoreCase("SOMATIC")) { - if (!mut1.getMutationStatus().equalsIgnoreCase("Germline")) { - // select somatic over others - ret = mut2; - } - } - } - - // merge centers - Set centers = new TreeSet(Arrays.asList(mut1.getSequencingCenter().split(";"))); - if (centers.addAll(Arrays.asList(mut2.getSequencingCenter().split(";")))) { - if (centers.size()>1) { - centers.remove("NA"); - } - ret.setSequencingCenter(StringUtils.join(centers, ";")); - } - - return ret; - } - - private String transformOMAScore( String omaScore) { - if( omaScore == null || omaScore.length() ==0) { - return omaScore; - } - if( omaScore.equalsIgnoreCase("H") || omaScore.equalsIgnoreCase("high")) { - return "H"; - } else if( omaScore.equalsIgnoreCase("M") || omaScore.equalsIgnoreCase("medium")) { - return "M"; - } else if( omaScore.equalsIgnoreCase("L") || omaScore.equalsIgnoreCase("low")) { - return "L"; - } else if( omaScore.equalsIgnoreCase("N") || omaScore.equalsIgnoreCase("neutral")) { - return "N"; - } else if( omaScore.equalsIgnoreCase("[sent]")) { - return "NA"; - } else { - return omaScore; - } - } - - private String processMAFHeader(BufferedReader buffer) throws IOException, DaoException { - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - String line = buffer.readLine().trim(); - while (line.startsWith("#")) { - Matcher seqSamplesMatcher = SEQUENCE_SAMPLES_REGEX.matcher(line); - // line is of format #sequenced_samples: STABLE_ID STABLE_ID STABLE_ID STABLE_ID - if (seqSamplesMatcher.find()) { - addSampleProfileRecords(getSequencedSamples(seqSamplesMatcher.group(1), geneticProfile)); - } - line = buffer.readLine().trim(); - } - return line; - } - - private List getSequencedSamples(String sequencedSamplesIDList, GeneticProfile geneticProfile) { - ArrayList toReturn = new ArrayList(); - for (String stableSampleID : sequencedSamplesIDList.trim().split("\\s")) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(geneticProfile.getCancerStudyId(), - StableIdUtil.getSampleId(stableSampleID)); - // if data files are run through validator, this condition should be minimal - if (sample == null) { - missingSample(stableSampleID); - } - toReturn.add(sample); - } - return toReturn; - } - - private void addSampleProfileRecords(List sequencedSamples) throws DaoException { - for (Sample sample : sequencedSamples) { - addSampleProfileRecord(sample); - } - if( MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - } - - private void addSampleProfileRecord(Sample sample) throws DaoException { - if (!DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)) { - Integer genePanelID = (genePanel == null) ? null : GeneticProfileUtil.getGenePanelId(genePanel); - DaoSampleProfile.addSampleProfile(sample.getInternalId(), geneticProfileId, genePanelID); - } - } - - private void missingSample(String stableSampleID) { - throw new NullPointerException("Sample is not found in database (is it missing from clinical data file?): " + stableSampleID); - } - - private String convertMapToJsonString(Map> map) throws JsonProcessingException { - ObjectMapper mapper = new ObjectMapper(); - return mapper.writeValueAsString(map); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGeneData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGeneData.java deleted file mode 100644 index 0ab8bd88f25..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGeneData.java +++ /dev/null @@ -1,801 +0,0 @@ -/* - * Copyright (c) 2015 - 2021 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ReferenceGenome; -import org.mskcc.cbio.portal.model.ReferenceGenomeGene; -import org.mskcc.cbio.portal.util.*; - -import joptsimple.OptionException; -import joptsimple.OptionParser; -import joptsimple.OptionSet; -import joptsimple.OptionSpec; - -import java.io.*; -import java.util.*; - -/** - * Command Line Tool to Import Background Gene Data. - */ -public class ImportGeneData extends ConsoleRunnable { - - /** - * Adds the genes parsed from the file into the Database. - * - * @param geneFile File with gene information - * @throws IOException - * @throws DaoException - */ - public static void importData(File geneFile, String genomeBuild) throws IOException, DaoException { - Map> genesWithSymbolFromNomenClatureAuthority = new LinkedHashMap<>(); - Map> genesWithoutSymbolFromNomenClatureAuthority = new LinkedHashMap<>(); - Map> refGenesWithSymbolFromNomenClatureAuthority = new LinkedHashMap<>(); - Map> refGenesWithoutSymbolFromNomenClatureAuthority = new LinkedHashMap<>(); - try (FileReader reader = new FileReader(geneFile)) { - BufferedReader buf = new BufferedReader(reader); - String line; - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (line.startsWith("#")) { - continue; - } - - String species = GlobalProperties.getSpecies(); - String parts[] = line.split("\t"); - int taxonomy = Integer.parseInt(parts[0]); - if (species.equals("human")) { - if (taxonomy!=9606) { - // only import human genes - continue; - } - } else if (species.equals("mouse")) { - if (taxonomy!=10090) { - // only import mouse genes - continue; - } - } else { - throw new Error("Species "+species+" is not supported."); - } - - int entrezGeneId = Integer.parseInt(parts[1]); - String geneSymbol = parts[2]; - String locusTag = parts[3]; - String strAliases = parts[4]; - String strXrefs = parts[5]; - String cytoband = parts[7]; - String chr = cytoband.split("[pq;c \\|]")[0]; // various strange characters were found in this column - int referenceGenomeId = DaoReferenceGenome.getReferenceGenomeByBuildName(genomeBuild).getReferenceGenomeId(); - String desc = parts[8]; - String type = parts[9]; - String mainSymbol = parts[10]; // use 10 instead of 2 since column 2 may have duplication - Set aliases = new HashSet(); - - // try to get chr from other column if needed - if (chr.equals("-")) { - if (!parts[6].equals("-")) { - chr = parts[6]; - } else { - continue; // skip if both columns are absent - } - } - if (!locusTag.equals("-")) { - aliases.add(locusTag); - } - if (!strAliases.equals("-")) { - aliases.addAll(Arrays.asList(strAliases.split("\\|"))); - } - - if (geneSymbol.startsWith("MIR") && type.equalsIgnoreCase("miscRNA")) { - line = buf.readLine(); - continue; // ignore miRNA; process separately - } - - CanonicalGene gene = null; - ReferenceGenomeGene refGene = null; - if (!mainSymbol.equals("-")) { - //Try the main symbol: - gene = new CanonicalGene(entrezGeneId, mainSymbol, aliases); - refGene = new ReferenceGenomeGene(entrezGeneId, referenceGenomeId, chr, cytoband, 0, 0); - Set genes = genesWithSymbolFromNomenClatureAuthority.get(mainSymbol); - Set refGenes = refGenesWithSymbolFromNomenClatureAuthority.get(mainSymbol); - if (genes==null) { - genes = new HashSet(); - genesWithSymbolFromNomenClatureAuthority.put(mainSymbol, genes); - } - if (refGenes==null) { - refGenes = new HashSet(); - refGenesWithSymbolFromNomenClatureAuthority.put(mainSymbol, refGenes); - } - genes.add(gene); - refGenes.add(refGene); - } else if (!geneSymbol.equals("-")) { - //there is no main symbol, so import using the temporary/unofficial(?) symbol: - gene = new CanonicalGene(entrezGeneId, geneSymbol, aliases); - refGene = new ReferenceGenomeGene(entrezGeneId, referenceGenomeId, chr, cytoband, 0, 0); - Set genes = genesWithoutSymbolFromNomenClatureAuthority.get(geneSymbol); - Set refGenes = refGenesWithoutSymbolFromNomenClatureAuthority.get(geneSymbol); - if (genes==null) { - genes = new HashSet(); - genesWithoutSymbolFromNomenClatureAuthority.put(geneSymbol, genes); - } - if (refGenes==null) { - refGenes = new HashSet(); - refGenesWithoutSymbolFromNomenClatureAuthority.put(geneSymbol, refGenes); - } - genes.add(gene); - refGenes.add(refGene); - } - - if (gene!=null) { - gene.setType(type); - } - } - addGenesToDB(genesWithSymbolFromNomenClatureAuthority, genesWithoutSymbolFromNomenClatureAuthority); - addReferenceGenomeGenesToDB(refGenesWithSymbolFromNomenClatureAuthority, - refGenesWithoutSymbolFromNomenClatureAuthority); - } - } - - /** - * Adds the genes parsed from the HGNC file into the database. - * - * @param geneFile HGNC File with gene information - * @throws IOException - * @throws DaoException - */ - public static void importHGNCData(File geneFile, String genomeBuild) throws IOException, DaoException { - Map> canonicalGeneMap = new LinkedHashMap<>(); - Map> refGeneMap = new LinkedHashMap<>(); - try (FileReader reader = new FileReader(geneFile)) { - BufferedReader buf = new BufferedReader(reader); - String line; - buf.readLine(); // skip first (header) line - ProgressMonitor.incrementCurValue(); // for header line - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - String parts[] = line.split("\t", -1); // include trailing empty strings - if (!parts[0].matches("[0-9]+")) { - ProgressMonitor.logWarning("Skipping gene with invalid entrez gene id '" + parts[1] + "'"); - continue; - } - int entrezGeneId = Integer.parseInt(parts[0]); - String geneSymbol = parts[1]; - String cytoband = parts[3]; - String chr = cytoband.split("[pq;c \\|]")[0]; // various strange characters were found in this column - String type = parts[4]; - String strAliases = parts[5]; - Set aliases = new HashSet(); - int referenceGenomeId = DaoReferenceGenome.getReferenceGenomeByBuildName(genomeBuild).getReferenceGenomeId(); - - // try to get chr from chromosome column if needed - // if cytoband is mitochondria then use chromosome M - if (!chr.matches("[0-9XY]{1,2}")) { - if (parts[2].matches("[0-9XY]{1,2}")) { - chr = parts[2]; - ProgressMonitor.logWarning("Taking chromosome from chromosome column" + chr); - } else { - if (cytoband.equals("mitochondria")) { - chr = "M"; - } else { - ProgressMonitor.logWarning("Skipping gene with chromosome " + chr); - continue; // skip if we don't know chromosome - } - } - } - - if (!strAliases.equals("-") && !strAliases.equals("")) { - aliases.addAll(Arrays.asList(strAliases.split("\\|"))); - } - - CanonicalGene canonicalGene = new CanonicalGene(entrezGeneId, geneSymbol, aliases); - canonicalGene.setType(type); - ReferenceGenomeGene refGene = new ReferenceGenomeGene(entrezGeneId, referenceGenomeId, chr, cytoband, 0, 0); - Set canonicalGenes = canonicalGeneMap.get(geneSymbol); - Set refGenes = refGeneMap.get(geneSymbol); - if (canonicalGenes == null) { - canonicalGenes = new HashSet(); - canonicalGeneMap.put(geneSymbol, canonicalGenes); - } - if (refGenes == null) { - refGenes = new HashSet(); - refGeneMap.put(geneSymbol, refGenes); - } - canonicalGenes.add(canonicalGene); - refGenes.add(refGene); - } - addGenesToDB(canonicalGeneMap, new LinkedHashMap>()); - addReferenceGenomeGenesToDB(refGeneMap, new LinkedHashMap>()); - } - } - - /** - * Iterate over the genes found in the given maps and try to add them to the DB. - * - * @param genesWithSymbolFromNomenClatureAuthority: genes with official symbol - * @param genesWithoutSymbolFromNomenClatureAuthority: genes without official symbol (can happen, some entrez genes - * have no official symbol yet, but a temporary symbol). - * - * @throws DaoException - */ - private static void addGenesToDB(Map> genesWithSymbolFromNomenClatureAuthority, - Map> genesWithoutSymbolFromNomenClatureAuthority) throws DaoException { - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - int nrExisting = 0; - // Add genes with symbol from nomenclature authority - for (Map.Entry> entry : genesWithSymbolFromNomenClatureAuthority.entrySet()) { - Set genes = entry.getValue(); - if (genes.size()==1) { - CanonicalGene gene = genes.iterator().next(); - // first check if gene exists. If exists, give warning and skip record: - if (daoGene.getGene(gene.getEntrezGeneId()) != null) { - ProgressMonitor.logWarning("Gene is already in table. Updates are not allowed. If you need to update the `gene` table, please remove all studies first and empty the `gene` table."); - nrExisting++; - continue; - } - daoGene.addGene(gene); - ProgressMonitor.logWarning("New gene with official symbol added"); - } else { - //TODO - is unexpected for official symbols...raise Exception instead? - logDuplicateGeneSymbolWarning(entry.getKey(), genes, true); - } - } - - // Add genes without symbol from nomenclature authority - if (genesWithoutSymbolFromNomenClatureAuthority.keySet().size() > 0) { - int nrImported = 0; - int nrSkipped = 0; - for (Map.Entry> entry : genesWithoutSymbolFromNomenClatureAuthority.entrySet()) { - Set genes = entry.getValue(); - String symbol = entry.getKey(); - if (genes.size()==1) { - CanonicalGene gene = genes.iterator().next(); - //only add the gene if it does not conflict with an official symbol: - if (!genesWithSymbolFromNomenClatureAuthority.containsKey(symbol)) { - //first check if gene exists. If exists, give warning and skip record since we don't allow updates in this process: - if (daoGene.getGene(gene.getEntrezGeneId()) != null) { - ProgressMonitor.logWarning("Gene is already in table. Updates are not allowed. If you need to update the `gene` table, please remove all studies first and empty the `gene` table."); - nrSkipped++; - nrExisting++; - continue; - } - daoGene.addGene(gene); - ProgressMonitor.logWarning("New gene with *no* official symbol added"); - nrImported++; - } else { - // ignore entries with a symbol that have the same value as stardard one - ProgressMonitor.logWarning("Ignored line with entrez gene id "+gene.getEntrezGeneId() + " because its 'unnoficial' symbol " + - symbol+" is already an 'official symbol' of another gene"); - nrSkipped++; - continue; - } - } else { - logDuplicateGeneSymbolWarning(symbol, genes, false); - nrSkipped++; - continue; - } - } - ProgressMonitor.logWarning("There were " +genesWithoutSymbolFromNomenClatureAuthority.keySet().size() + - " genes names in this file without an official symbol from nomenclature authority. Imported: " + nrImported + - ". Gene names skipped (because of duplicate symbol entry or because symbol is an 'official symbol' of another gene): " + nrSkipped); - } - - if (nrExisting > 0) { - ProgressMonitor.logWarning("Number of records skipped because the gene was already in the gene table (updates are not allowed - see specific warnings above): " + nrExisting); - } - } - - /** - * Iterate over the reference genome genes found in the given maps and try to add them to the DB. - * - * @param refGenesWithSymbolFromNomenClatureAuthority: reference genome genes with official symbol - * @param refGenesWithoutSymbolFromNomenClatureAuthority: reference genome genes without official symbol (can happen, some entrez genes - * have no official symbol yet, but a temporary symbol). - * - * @throws DaoException - */ - private static void addReferenceGenomeGenesToDB(Map> refGenesWithSymbolFromNomenClatureAuthority, - Map> refGenesWithoutSymbolFromNomenClatureAuthority) throws DaoException { - - DaoReferenceGenomeGene daoReferenceGenomeGene = DaoReferenceGenomeGene.getInstance(); - - int nrExisting = 0; - // Add genes with symbol from nomenclature authority - for (Map.Entry> entry : refGenesWithSymbolFromNomenClatureAuthority.entrySet()) { - Set refGenes = entry.getValue(); - if (refGenes.size()==1) { - ReferenceGenomeGene refGene = refGenes.iterator().next(); - // first check if gene exists. If exists, give warning and skip record: - if (daoReferenceGenomeGene.getGene(refGene.getEntrezGeneId(), refGene.getReferenceGenomeId()) != null) { - ProgressMonitor.logWarning("Reference Genome Gene is already in table. Updates are not allowed. If you need to update the `gene` table, please remove all studies first and empty the `gene` table."); - nrExisting++; - continue; - } - try { - daoReferenceGenomeGene.addOrUpdateGene(refGene); - } catch (Exception e) { - ProgressMonitor.logWarning("chromosome too large" + refGene.getChr()); - continue; - } - ProgressMonitor.logWarning("New reference genome gene with official symbol added"); - } else { - //TODO - is unexpected for official symbols...raise Exception instead? - logDuplicateReferenceGenomeGeneSymbolWarning(entry.getKey(), refGenes, true); - } - } - - // Add genes without symbol from nomenclature authority - if (refGenesWithoutSymbolFromNomenClatureAuthority.keySet().size() > 0) { - int nrImported = 0; - int nrSkipped = 0; - for (Map.Entry> entry : refGenesWithoutSymbolFromNomenClatureAuthority.entrySet()) { - Set refGenes = entry.getValue(); - String symbol = entry.getKey(); - if (refGenes.size()==1) { - ReferenceGenomeGene refGene = refGenes.iterator().next(); - //only add the gene if it does not conflict with an official symbol: - if (!refGenesWithSymbolFromNomenClatureAuthority.containsKey(symbol)) { - //first check if gene exists. If exists, give warning and skip record since we don't allow updates in this process: - if (daoReferenceGenomeGene.getGene(refGene.getEntrezGeneId(), refGene.getReferenceGenomeId()) != null) { - ProgressMonitor.logWarning("Gene is already in table. Updates are not allowed. If you need to update the `gene` table, please remove all studies first and empty the `gene` table."); - nrSkipped++; - nrExisting++; - continue; - } - daoReferenceGenomeGene.addOrUpdateGene(refGene); - ProgressMonitor.logWarning("New gene with *no* official symbol added"); - nrImported++; - } else { - // ignore entries with a symbol that have the same value as stardard one - ProgressMonitor.logWarning("Ignored line with entrez gene id "+refGene.getEntrezGeneId() + " because its 'unnoficial' symbol " + - symbol+" is already an 'official symbol' of another gene"); - nrSkipped++; - continue; - } - } else { - logDuplicateReferenceGenomeGeneSymbolWarning(entry.getKey(), refGenes, true); - nrSkipped++; - continue; - } - } - ProgressMonitor.logWarning("There were " +refGenesWithoutSymbolFromNomenClatureAuthority.keySet().size() + - " genes names in this file without an official symbol from nomenclature authority. Imported: " + nrImported + - ". Gene names skipped (because of duplicate symbol entry or because symbol is an 'official symbol' of another gene): " + nrSkipped); - } - - if (nrExisting > 0) { - ProgressMonitor.logWarning("Number of records skipped because the gene was already in the gene table (updates are not allowed - see specific warnings above): " + nrExisting); - } - } - - private static void logDuplicateGeneSymbolWarning(String symbol, Set genes, boolean isOfficialSymbol) { - StringBuilder sb = new StringBuilder(); - if (isOfficialSymbol) { - sb.append("More than 1 gene has the same (official) symbol "); - } else { - sb.append("More than 1 gene has the same (unofficial) symbol "); - } - sb.append(symbol) - .append(":"); - for (CanonicalGene gene : genes) { - sb.append(" ") - .append(gene.getEntrezGeneId()) - .append(". Ignore..."); - } - ProgressMonitor.logWarning(sb.toString()); - } - - private static void logDuplicateReferenceGenomeGeneSymbolWarning(String symbol, Set refGenes, boolean isOfficialSymbol) { - StringBuilder sb = new StringBuilder(); - if (isOfficialSymbol) { - sb.append("More than 1 gene has the same (official) symbol "); - } else { - sb.append("More than 1 gene has the same (unofficial) symbol "); - } - sb.append(symbol) - .append(":"); - for (ReferenceGenomeGene refGene : refGenes) { - sb.append(" ") - .append(refGene.getEntrezGeneId()) - .append(". Ignore..."); - } - ProgressMonitor.logWarning(sb.toString()); - } - - private static String getCytoband(String cytoband, String species) { - if (!cytoband.equals("-")) { - if (species.equals("mouse")) { - //Usually three cytobands are represented in the gene info for mouse: - //First, only the chromosome number, then the chromosome number and the position - //of the gene in cM, and finally, by the "Correct" cytoband, that is the name of - //the chromosome and the cytoband, which is a letter (from A to H) followed by a - //numeric position, for example X A3 or 3 A1.2. - List cytobands = new ArrayList(); - cytobands.addAll(Arrays.asList(cytoband.split("\\|"))); - for (String i : cytobands) { - if (!i.contains("cM")) { //Skip cytobands containing cM - if (cytobands.size() <= 2) { - cytoband = i; //Only one cytoband is left from these gene. - } else { - //We have more than one cytoband for these gene, so keep the one which - //has the cytoband. - if (i.contains("A") || i.contains("B") || i.contains("C") || i.contains("D") || i.contains("E") || i.contains("F") || i.contains("G") || i.contains("H")) { - cytoband = i; - } - } - } - } - } - return cytoband; - } - return null; - } - - /** - * This method imports the gene lengths of a General Transfer Format (gtf) file. This file contains different genetic features from genes (CDS, exons, introns...) in each line. - * All features of a single gene contain the same Ensembl ID. Therefore, this method uses the Ensembl IDs to differentiate between different genes. All the features with the same - * Ensembl ID are in consecutive lines. This method uses the gene symbol to retrieve the Entrez ID, but different Ensembl IDs can share the same symbol. If these Ensembl IDs are - * located in different chromosomes, the method uses the length of the Ensembl ID according to the cytoband from the gene saved in the database. In the case multiple Ensembl IDs - * with the same symbol are on the same chromosome or no cytoband information is available, the length of the last Ensembl ID is taken. - * - * @param geneFile - * @throws IOException - * @throws DaoException - */ - - public static void importGeneLength(File geneFile, String genomeBuild, String species, boolean hasGenes) throws IOException, DaoException { - //Set the variables needed for the method - FileReader reader = new FileReader(geneFile); - BufferedReader buf = new BufferedReader(reader); - int referenceGenomeId = DaoReferenceGenome.getReferenceGenomeByBuildName(genomeBuild).getReferenceGenomeId(); - String line; - ProgressMonitor.setCurrentMessage("\nUpdating gene lengths... \n"); //Display a message in the console - boolean geneUpdated = false; - - String previousEnsembl = ""; - String currentEnsembl = ""; - String previousSymbol = ""; - String currentSymbol = ""; - String previousChrom = ""; - String currentChrom = ""; - Long currentStart; - Long currentStop; - - String parts[] = null; - List loci = new ArrayList(); - int nrGenesUpdated = 0; - - //Iterate over the file and fill the hash map with the max and min values of each gene (start and end position) - while ((line=buf.readLine()) != null) { - if(line.charAt(0) == '#'){ - continue; - } - parts = line.split("\t"); - currentChrom = parts[0]; - currentStart = Long.parseLong(parts[3]); - currentStop = Long.parseLong(parts[4]) + 1; // We have to add 1 here, because the last base is also included. - - if (parts[2].contains("exon") || parts[2].contains("CDS")) { - String info[] = parts[8].split(";"); - - //Retrieve the ensembl ID - for (String i : info) { - if (i.contains("gene_id")) { - String j[] = i.split(" "); - currentEnsembl = j[1].replaceAll("\"", ""); - } - else if (i.contains("gene_name")) { - String j[] = i.split(" "); - currentSymbol = j[2].replaceAll("\"", ""); - } - } - - /// Only in case of the first line - if (previousEnsembl.equals("")) { - previousEnsembl = currentEnsembl; - previousSymbol = currentSymbol; - previousChrom = currentChrom; - loci.add(new long[]{currentStart, currentStop}); //Add the new positions - } - /// For all other lines - else { - - /// If there is no switch from Ensembl ID - if (previousEnsembl.equals(currentEnsembl)) { - loci.add(new long[]{currentStart, currentStop}); //Add the new positions - } - /// If there is a switch - else { - geneUpdated = updateLength(previousSymbol, previousChrom, loci, - referenceGenomeId); - if (geneUpdated) { - nrGenesUpdated++; - } - /// At the end of writing a new gene, clear the loci and save the new ensemblID. - loci.clear(); - - previousEnsembl = currentEnsembl; - previousSymbol = currentSymbol; - previousChrom = currentChrom; - loci.add(new long[]{currentStart, currentStop}); //Add the new positions - } - } - } - } - /// Write the last gene - /// First check if the gene exists in the database - geneUpdated = updateLength(previousSymbol, previousChrom, loci, referenceGenomeId); - if (geneUpdated) { - nrGenesUpdated++; - } - ProgressMonitor.setCurrentMessage("Updated length info for " + nrGenesUpdated + " genes\n"); - - buf.close(); - } - - /** - * This method receives a symbol, a chromosome and a list of loci (should be from the same gene), and with that it retrieves the database gene and it calculates the length - * of all its exons contained in loci. If the symbol is ambiguous, or the chromosome reported does not match the cytoband of the database gene, then length is not updated. - * The method reports a boolean stating if the gene length has been updated or not. - * - * @param symbol - * @param chromosome - * @param loci - * @return - * @throws IOException - * @throws DaoException - */ - public static boolean updateLength(String symbol, String chromosome, List loci, int refreneceGenomeId) throws IOException, DaoException { - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - CanonicalGene gene = daoGeneOptimized.getNonAmbiguousGene(symbol); - - boolean lengthUpdated = false; - - if (gene == null) { - ProgressMonitor.logWarning("Unable to retrieve gene by symbol: " +symbol); - return lengthUpdated; - } - - System.out.println(" --> update reference genome gene: " + gene.getHugoGeneSymbolAllCaps()); - DaoReferenceGenomeGene daoReferenceGenomeGene = DaoReferenceGenomeGene.getInstance(); - - /// Check if the gene is in the database - ReferenceGenomeGene refGene = daoReferenceGenomeGene.getGene(gene.getEntrezGeneId(), refreneceGenomeId); - /// If it's not in the database, don't add it - if (refGene != null) { - /// Calc length - long[] exonic = calculateGeneLength(loci); - - /// If there is a cytoband in database, check if cytoband-chr matches input-chr - if (refGene.getCytoband() != null) { - String cbChr = "chr"+refGene.getCytoband().split("[pq;c \\|]")[0]; - System.out.println(" updateLength--> cytoband of the gene: " + cbChr); - if (cbChr.equals(chromosome)) { //Update the length only if the chromosome matches - // update reference genome gene - System.out.println(" updateLength--> update reference genome gene: " + gene.getHugoGeneSymbolAllCaps()); - refGene.setStart(exonic[0]); - refGene.setEnd(exonic[1]); - daoReferenceGenomeGene.updateGene(refGene); - } - else { - ProgressMonitor.logWarning("Cytoband from reference gene is not on the same chromosome - unable to update the length of this gene (likely another version of gene in gtf has correct chr and is saved)"); - } - } - else { - ProgressMonitor.logWarning("Cytoband is not available - unable to update the length of this gene (likely another version of gene in gtf has correct chr and is saved)"); - } - } - return lengthUpdated; - } - - /** - * This method uses a list of exon loci from the same gene and it adds the length of all of them to get the gene length. If some of the exons are - * overlapping, the overlapping part is only counted once in the calculation. For example, if an exon goes from position 3 to 10 and another one from - * position 5 to 11, when calculating the length these exons would be considered as a single exon going from position 3 to 11. - * - * @param loci - * @return - */ - public static long[] calculateGeneLength(List loci) { - long min = Long.MAX_VALUE, max=-1; - for (long[] l : loci) { - if (l[0]max) { - max = l[1]; - } - } - if (max < min) { - throw new IllegalArgumentException("Found error: max=" + max + ", min=" + min); - } - BitSet bitSet = new BitSet((int)(max-min)); - for (long[] l : loci) { - bitSet.set((int)(l[0]-min), ((int)(l[1]-min))); - } - - return new long[]{min, max, bitSet.cardinality()}; - } - - static void importSuppGeneData(File suppGeneFile, String referenceGenomeBuild) throws IOException, DaoException { - MySQLbulkLoader.bulkLoadOff(); - FileReader reader = new FileReader(suppGeneFile); - BufferedReader buf = new BufferedReader(reader); - String line; - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - DaoReferenceGenomeGene daoRefGene = DaoReferenceGenomeGene.getInstance(); - ReferenceGenome refGenome = DaoReferenceGenome.getReferenceGenomeByBuildName(referenceGenomeBuild); - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#")) { - String parts[] = line.split("\t"); - CanonicalGene gene = new CanonicalGene(parts[0]); - ReferenceGenomeGene refGene = new ReferenceGenomeGene( - gene.getEntrezGeneId(), - refGenome.getReferenceGenomeId()); - if (!parts[1].isEmpty()) { - gene.setType(parts[1]); - } - if (!parts[2].isEmpty()) { - refGene.setCytoband(parts[2]); - } - daoGene.addGene(gene); - daoRefGene.addOrUpdateGene(refGene); - } - } - reader.close(); - } - - @Override - public void run() { - try { - SpringUtil.initDataSource(); - - String description = "Update gene / gene alias tables "; - - // using a real options parser, helps avoid bugs - OptionParser parser = new OptionParser(); - OptionSpec help = parser.accepts( "help", "print this help info" ); - parser.accepts( "genes", "ncbi genes file" ).withRequiredArg().describedAs( "ncbi_genes.txt" ).ofType( String.class ); - parser.accepts( "hgnc", "hgnc genes file" ).withRequiredArg().describedAs( "hgnc_genes.txt" ).ofType( String.class ); - parser.accepts( "supp-genes", "alternative genes file" ).withRequiredArg().describedAs( "supp-genes.txt" ).ofType( String.class ); - parser.accepts( "microrna", "microrna file" ).withRequiredArg().describedAs( "microrna.txt" ).ofType( String.class ); - parser.accepts( "gtf", "gtf file for calculating and storing gene lengths" ).withRequiredArg().describedAs( "gencode..annotation.gtf" ).ofType( String.class ); - parser.accepts( "genome-build", "genome build eg GRCh38" ).withRequiredArg().describedAs( "genome build" ).ofType( String.class ); - parser.accepts( "species", "different kinds of organisms eg. humna").withRequiredArg().describedAs( "species" ).ofType( String.class ); - String progName = "importGenes"; - OptionSet options = null; - try { - options = parser.parse( args ); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, - e.getMessage()); - } - - if( options.has( help ) ){ - throw new UsageException(progName, description, parser); - } - - ProgressMonitor.setConsoleMode(true); - - if(options.has("genes")) { - File geneFile = new File((String) options.valueOf("genes")); - System.out.println("Reading gene data from: " + geneFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(geneFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - MySQLbulkLoader.bulkLoadOn(); - ImportGeneData.importData(geneFile, (String)options.valueOf("genome-build")); - MySQLbulkLoader.flushAll(); //Gene and gene_alias should be updated before calculating gene length (gtf)! - } - - if(options.has("hgnc")) { - File geneFile = new File((String) options.valueOf("hgnc")); - System.out.println("Reading gene data from: " + geneFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(geneFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - MySQLbulkLoader.bulkLoadOn(); - ImportGeneData.importHGNCData(geneFile, (String)options.valueOf("genome-build")); - MySQLbulkLoader.flushAll(); //Gene and gene_alias should be updated before calculating gene length (gtf)! - } - - if(options.has("supp-genes")) { - File suppGeneFile = new File((String) options.valueOf("genes")); - System.out.println("Reading supp. gene data from: " + suppGeneFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(suppGeneFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportGeneData.importSuppGeneData(suppGeneFile, - (String)options.valueOf("genome-build")); - } - - if(options.has("microrna")) { - File miRNAFile = new File((String) options.valueOf("microrna")); - System.out.println("Reading miRNA data from: " + miRNAFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(miRNAFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportMicroRNAIDs.importData(miRNAFile); - } - - if(options.has("gtf")) { - File lociFile = new File((String) options.valueOf("gtf")); - String species = ReferenceGenome.HOMO_SAPIENS; - if (options.has("species")) { - species = (String)options.valueOf("species"); - } - System.out.println("Reading loci data from: " + lociFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(lociFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportGeneData.importGeneLength(lociFile, (String)options.valueOf("genome-build"), - species, options.has("genes")); - } - MySQLbulkLoader.flushAll(); - System.err.println("Done. Restart tomcat to make sure the cache is replaced with the new data."); - - } - catch (RuntimeException e) { - throw e; - } - catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportGeneData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportGeneData(args); - runner.runInConsole(); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenePanel.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenePanel.java deleted file mode 100644 index 17263747154..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenePanel.java +++ /dev/null @@ -1,143 +0,0 @@ -/* - * Copyright (c) 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.io.*; -import java.util.*; - -import joptsimple.*; - -import static org.mskcc.cbio.portal.util.GenePanelUtil.extractGenes; -import static org.mskcc.cbio.portal.util.GenePanelUtil.extractPropertyValue; - -/** - * @author heinsz - */ -public class ImportGenePanel extends ConsoleRunnable { - - private File genePanelFile; - - @Override - public void run() { - try { - String progName = "ImportGenePanel"; - String description = "Import gene panel files."; - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts("data", - "gene panel file").withRequiredArg().describedAs("data_file.txt").ofType(String.class); - parser.accepts("noprogress", "this option can be given to avoid the messages regarding memory usage and % complete"); - - OptionSet options = null; - try { - options = parser.parse(args); - } catch (OptionException e) { - throw new UsageException( - progName, description, parser, - e.getMessage()); - } - File genePanel_f = null; - if (options.has(data)) { - genePanel_f = new File(options.valueOf(data)); - } else { - throw new UsageException( - progName, description, parser, - "'data' argument required."); - } - - setFile(genePanel_f); - importData(); - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - public void importData() throws Exception { - ProgressMonitor.setCurrentMessage("Reading data from: " + genePanelFile.getAbsolutePath()); - Properties properties = new Properties(); - properties.load(new FileInputStream(genePanelFile)); - - String stableId = extractPropertyValue("stable_id", properties, true); - String description = extractPropertyValue("description", properties, false); - Set canonicalGenes = extractGenes(properties, false); - - GenePanel genePanel = DaoGenePanel.getGenePanelByStableId(stableId); - boolean panelUsed = false; - if (genePanel != null) { - if (DaoSampleProfile.sampleProfileMappingExistsByPanel(genePanel.getInternalId())) { - ProgressMonitor.logWarning("Gene panel " + stableId + " already exists in databasel and is being used! Cannot import the gene panel!"); - panelUsed = true; - } else { - DaoGenePanel.deleteGenePanel(genePanel); - ProgressMonitor.logWarning("Gene panel " + stableId + " already exists in the database but is not being used. Overwriting old gene panel data."); - } - } - - if (!panelUsed) { - if (canonicalGenes != null) { - DaoGenePanel.addGenePanel(stableId, description, canonicalGenes); - } else { - ProgressMonitor.logWarning("Gene panel " + stableId + " cannot be imported because one or more genes in the panel are not found in the database, or are duplicated."); - } - } - } - - public void setFile(File genePanelFile) { - this.genePanelFile = genePanelFile; - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportGenePanel(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportGenePanel(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenePanelProfileMap.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenePanelProfileMap.java deleted file mode 100644 index 8e0d77c445a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenePanelProfileMap.java +++ /dev/null @@ -1,227 +0,0 @@ -/* - * Copyright (c) 2016 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -import java.io.*; -import joptsimple.*; -import java.util.*; - -/** - * - * @author heinsz, sandertan - */ -public class ImportGenePanelProfileMap extends ConsoleRunnable { - - private File genePanelProfileMapFile; - private String cancerStudyStableId; - - private static final String NA_STRING = "NA"; - private static final String WXS_STRING = "WXS"; - private static final String WGS_STRING = "WGS"; - private static final String WXS_WGS_STRING = "WXS/WGS"; - - @Override - public void run() { - try { - String progName = "ImportGenePanelProfileMap"; - String description = "Import gene panel profile map files."; - // usage: --data --meta [--noprogress] - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts( "data", - "gene panel file" ).withRequiredArg().describedAs( "data_file.txt" ).ofType( String.class ); - OptionSpec meta = parser.accepts( "meta", - "gene panel file" ).withRequiredArg().describedAs( "meta_file.txt" ).ofType( String.class ); - parser.accepts("noprogress", "this option can be given to avoid the messages regarding memory usage and % complete"); - - OptionSet options; - try { - options = parser.parse( args ); - } catch (OptionException e) { - throw new UsageException( - progName, description, parser, - e.getMessage()); - } - File genePanel_f; - if( options.has( data ) ){ - genePanel_f = new File( options.valueOf( data ) ); - } else { - throw new UsageException( - progName, description, parser, - "'data' argument required."); - } - - if( options.has( meta ) ){ - Properties properties = new TrimmedProperties(); - properties.load(new FileInputStream(options.valueOf(meta))); - cancerStudyStableId = properties.getProperty("cancer_study_identifier"); - } else { - throw new UsageException( - progName, description, parser, - "'meta' argument required."); - } - - setFile(genePanel_f); - SpringUtil.initDataSource(); - importData(); - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - /* This function will return null for special cases "WXS", "WGS", and "WXS/WGS". Otherwise - it will throw a RuntimeException if the specified genePanelName is not in the database. - */ - private Integer determineGenePanelId(String genePanelName) { - // use null for WXS (whole exome sequencing) or WGS (whole genome sequencing) - if (WXS_STRING.equals(genePanelName) || WGS_STRING.equals(genePanelName) || WXS_WGS_STRING.equals(genePanelName)) { - return null; - } - // extract gene panel ID - GenePanel genePanel = DaoGenePanel.getGenePanelByStableId(genePanelName); - if (genePanel != null) { - return genePanel.getInternalId(); - } else { - // Throw an exception if gene panel is not in database - throw new RuntimeException("Gene panel cannot be found in database: " + genePanelName); - } - } - - public void importData() throws Exception { - ProgressMonitor.setCurrentMessage("Reading data from: " + genePanelProfileMapFile.getAbsolutePath()); - FileReader reader = new FileReader(genePanelProfileMapFile); - BufferedReader buff = new BufferedReader(reader); - - // Extract and parse first line which contains the profile names - List profiles = getProfilesLine(buff); - Integer sampleIdIndex = profiles.indexOf("SAMPLE_ID"); - if (sampleIdIndex < 0) { - throw new RuntimeException("Missing SAMPLE_ID column in file " + genePanelProfileMapFile.getAbsolutePath()); - } - profiles.remove((int)sampleIdIndex); - List profileIds = getProfileIds(profiles); - - // Get cancer study - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId); - - // Loop over gene panel matrix and load into database - ProgressMonitor.setCurrentMessage("Loading gene panel profile matrix data to database.."); - String row; - while((row = buff.readLine()) != null) { - List row_data = new LinkedList<>(Arrays.asList(row.split("\t"))); - - // Extract and parse sample ID - // Use StableIdUtil to convert IDs to match what would be stored in DB - // Specifically, TCGA samples have additional processing that changes the sample stable id - String sampleId = StableIdUtil.getSampleId(row_data.get(sampleIdIndex)); - - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudy.getInternalId(), sampleId); - row_data.remove((int)sampleIdIndex); - - // Loop over the values in the row - for (int i = 0; i < row_data.size(); i++) { - String genePanelName = row_data.get(i); - - // NA triggers specific case to indicate sample was not profiled - // e.g. an aggregate study from multiple institutions - // one of which definitely did not profile for the sv profile - if (NA_STRING.equals(genePanelName)) { - continue; - } - - Integer genePanelId = determineGenePanelId(genePanelName); - // Add gene panel information to database - DaoSampleProfile.updateSampleProfile( - sample.getInternalId(), - profileIds.get(i), - genePanelId); - } - } - } - - private List getProfilesLine(BufferedReader buff) throws Exception { - String line = buff.readLine(); - while(line.startsWith("#")) { - line = buff.readLine(); - } - return new LinkedList<>(Arrays.asList(line.split("\t"))); - } - - private List getProfileIds(List profiles) { - List geneticProfileIds = new LinkedList<>(); - for(String profile : profiles) { - if (!profile.startsWith(cancerStudyStableId)) { - profile = cancerStudyStableId + "_" + profile; - } - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(profile); - if (geneticProfile != null) { - geneticProfileIds.add(geneticProfile.getGeneticProfileId()); - } - else { - throw new RuntimeException("Cannot find genetic profile " + profile + " in the database."); - } - } - return geneticProfileIds; - } - - - public void setFile(File genePanelProfileMapFile) - { - this.genePanelProfileMapFile = genePanelProfileMapFile; - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportGenePanelProfileMap(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportGenePanelProfileMap(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenericAssayEntity.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenericAssayEntity.java deleted file mode 100644 index 2da0ebd2cce..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenericAssayEntity.java +++ /dev/null @@ -1,283 +0,0 @@ -/* -* Copyright (c) 2019 The Hyve B.Vs. -* -* This library is distributed in the hope that it will be useful, but WITHOUT -* ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS -* FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder -* is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no -* obligations to provide maintenance, support, updates, enhancements or -* modifications. In no event shall Memorial Sloan-Kettering Cancer Center be -* liable to any party for direct, indirect, special, incidental or -* consequential damages, including lost profits, arising out of the use of this -* software and its documentation, even if Memorial Sloan-Kettering Cancer -* Center has been advised of the possibility of such damage. -*/ - -/* -* This file is part of cBioPortal. -* -* cBioPortal is free software: you can redistribute it and/or modify -* it under the terms of the GNU Affero General Public License as -* published by the Free Software Foundation, either version 3 of the -* License. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU Affero General Public License for more details. -* -* You should have received a copy of the GNU Affero General Public License -* along with this program. If not, see . -*/ - -/** -* @author Pim van Nierop, pim@thehyve.nl -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import org.cbioportal.model.EntityType; -import org.cbioportal.model.GenericEntityProperty; -import org.cbioportal.model.GeneticEntity; -import org.mskcc.cbio.portal.dao.DaoGenericAssay; -import org.mskcc.cbio.portal.dao.DaoGeneticEntity; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import joptsimple.OptionParser; -import joptsimple.OptionSet; -import joptsimple.OptionSpec; - -/** -* Note; Imports genetic entities from generic assay files. Has been written for treatment response data -* but is intended to be used for generic assay data in the future. The importer adds data to the treatment -* table. In later rounds of implementation of generic assay types this table should be renamed to fi. -* `assay`. Also all remaining references to 'treatment(s)' should be removed from the importer code. -* -* @author Pim van Nierop, pim@thehyve.nl -*/ -public class ImportGenericAssayEntity extends ConsoleRunnable { - - public ImportGenericAssayEntity(String[] args) { - super(args); - } - - public ImportGenericAssayEntity(File dataFile, EntityType entityType, String additionalProperties, boolean updateInfo) { - // fake the console arguments required by the ConsoleRunnable class - super( new String[]{"--data", dataFile.getAbsolutePath(), "--entity-type", entityType.name(), "--additional-properties", additionalProperties, "--update-info", updateInfo?"1":"0"}); - } - - @Override - public void run() { - try { - String progName = "ImportGenericAssay"; - String description = "Import generic assay records from generic assay response files."; - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts("data", "Generic assay data file") - .withRequiredArg().ofType(String.class); - - // require entity type - OptionSpec entityType = parser.accepts("entity-type", "Entity type") - .withRequiredArg().ofType(String.class); - - // don't require additional properties - OptionSpec additionalProperties = parser.accepts("additional-properties", "Additional properties need to be imported") - .withOptionalArg().ofType(String.class); - - // don't require updateInfo, default as true - OptionSpec updateInfoArg = parser.accepts("update-info", "Update information for existing entities in the database") - .withOptionalArg().ofType(String.class); - - OptionSet options = null; - try { - options = parser.parse(args); - } - catch (Exception ex) { - throw new UsageException( - progName, description, parser, - ex.getMessage()); - } - - // if neither option was set then throw UsageException - if (!options.has(data)) { - throw new UsageException( - progName, description, parser, - "'data' argument required"); - } - - // if no entity type then throw UsageException - if (!options.has(entityType)) { - throw new UsageException( - progName, description, parser, - "'entityType' argument required"); - } - - // Check options, set default as false - boolean updateInfo = false; - if (options.has("update-info") && (options.valueOf(updateInfoArg).equalsIgnoreCase("true") || options.valueOf(updateInfoArg).equals("1"))) { - updateInfo = true; - } - - ProgressMonitor.setCurrentMessage("Adding new generic assay to the database\n"); - startImport(options, data, entityType, additionalProperties, updateInfo); - - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Start import process for gene set file and supplementary file. - * - * @param updateInfo - */ - public static void startImport(OptionSet options, OptionSpec data, OptionSpec geneticAlterationType, OptionSpec additionalProperties, boolean updateInfo) throws Exception { - if (options.hasArgument(data) && options.hasArgument(geneticAlterationType)) { - File genericAssayFile = new File(options.valueOf(data)); - GeneticAlterationType geneticAlterationTypeArg = GeneticAlterationType.valueOf(options.valueOf(geneticAlterationType)); - String additionalPropertiesArg = options.valueOf(additionalProperties); - importData(genericAssayFile, geneticAlterationTypeArg, additionalPropertiesArg, updateInfo); - } - } - - /** - * Imports feature columns from generic assay file. - * - * @param dataFile - * @param geneticAlterationType - * @param additionalProperties - * @throws Exception - */ - public static void importData(File dataFile, GeneticAlterationType geneticAlterationType, String additionalProperties, boolean updateInfo) throws Exception { - - ProgressMonitor.setCurrentMessage("Reading data from: " + dataFile.getCanonicalPath()); - - // read generic assay data file - FileReader reader = new FileReader(dataFile); - BufferedReader buf = new BufferedReader(reader); - String currentLine = buf.readLine(); - String[] headerNames = currentLine.split("\t"); - - // read generic assay data - int indexStableIdField = getStableIdIndex(headerNames); - - // entities have been overriden - List updatedEntities = new ArrayList<>(); - List notUpdatedEntities = new ArrayList<>(); - List newEntities = new ArrayList<>(); - - // list of generic entity properties to be updated - List updateProperties = new ArrayList<>(); - - // load entities map from database - Map genericAssayStableIdToEntityIdMap = GenericAssayMetaUtils.buildGenericAssayStableIdToEntityIdMap(); - - currentLine = buf.readLine(); - - while (currentLine != null) { - - String[] parts = currentLine.split("\t"); - - // get stableId and try to find related Entity ID from genericAssayStableIdToEntityIdMap - String stableId = parts[indexStableIdField]; - Integer entityId = genericAssayStableIdToEntityIdMap.getOrDefault(stableId, null); - - // generic assay meta are always updated to based on the current import; - // also when present in db a new record is created. - - // extract fields; replace optional fields with the Stable ID when not set - HashMap propertiesMap = new HashMap<>(); - if (additionalProperties != null) { - String[] columnNameList = additionalProperties.trim().split(","); - for (String columnName : columnNameList) { - int indexAdditionalField = getColIndexByName(headerNames, columnName); - if (indexAdditionalField != -1) { - propertiesMap.put(columnName, parts[indexAdditionalField]); - } - } - } - - // log for the existing entities - if (entityId != null) { - if (updateInfo) { - updatedEntities.add(stableId); - DaoGenericAssay.deleteGenericEntityPropertiesByEntityId(entityId); - propertiesMap.forEach((k, v) -> { - updateProperties.add(new GenericEntityProperty(k, v, entityId)); - }); - } else { - notUpdatedEntities.add(stableId); - } - } - // create a new generic assay meta and add to the database - else { - newEntities.add(stableId); - GeneticEntity newGeneticEntity = new GeneticEntity(geneticAlterationType.name(), stableId); - GeneticEntity createdGeneticEntity = DaoGeneticEntity.addNewGeneticEntity(newGeneticEntity); - propertiesMap.forEach((k, v) -> { - updateProperties.add(new GenericEntityProperty(k, v, createdGeneticEntity.getId())); - }); - } - - currentLine = buf.readLine(); - } - - // Add new properties - if (updateProperties.size() > 0) { - DaoGenericAssay.setGenericEntityPropertiesUsingBatch(updateProperties); - } - - // show import result message - if (updatedEntities.size() > 0) { - ProgressMonitor.setCurrentMessage("--> Entities updated: " + updatedEntities.size() + " generic entities existing in the database that were overridden during import."); - } - if (notUpdatedEntities.size() > 0) { - ProgressMonitor.setCurrentMessage("--> Entities not updated: " + notUpdatedEntities.size() + " generic entities existing in the database that were not overridden during import."); - } - if (newEntities.size() > 0) { - ProgressMonitor.setCurrentMessage("--> New Entities: " + newEntities.size() + " generic entities have been imported into database during import."); - } - - reader.close(); - - ProgressMonitor.setCurrentMessage("Finished loading generic assay.\n"); - - return; - } - - // returns index for ENTITY_STABLE_ID column - private static int getStableIdIndex(String[] headers) { - return getColIndexByName(headers, "ENTITY_STABLE_ID"); - } - - // helper function for finding the index of a column by name - private static int getColIndexByName(String[] headers, String colName) { - for (int i=0; i - * --update-info [0:1] - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportGenericAssayEntity(args); - runner.runInConsole(); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenericAssayPatientLevelData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenericAssayPatientLevelData.java deleted file mode 100644 index a7dda2ca679..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenericAssayPatientLevelData.java +++ /dev/null @@ -1,307 +0,0 @@ -/* - * Copyright (c) 2021 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import java.util.stream.*; - -import org.cbioportal.model.EntityType; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -public class ImportGenericAssayPatientLevelData { - private HashSet importedGeneticEntitySet = new HashSet<>(); - private File dataFile; - private String targetLine; - private int geneticProfileId; - private GeneticProfile geneticProfile; - private int entriesSkipped = 0; - private String genePanel; - private String genericEntityProperties; - - private static final String ENTITY_STABLE_ID_COLUMN_NAME = "ENTITY_STABLE_ID"; - - /** - * Constructor. - * - * @param dataFile Generic Assay Patient Level data file - * @param targetLine The line we want to import. - * If null, all lines are imported. - * @param geneticProfileId GeneticProfile ID. - * @param genePanel GenePanel - * @param genericEntityProperties Generic Assay Entities. - * - * @deprecated : TODO shall we deprecate this feature (i.e. the targetLine)? - */ - public ImportGenericAssayPatientLevelData(File dataFile, String targetLine, int geneticProfileId, String genePanel, String genericEntityProperties) { - this.dataFile = dataFile; - this.targetLine = targetLine; - this.geneticProfileId = geneticProfileId; - this.genePanel = genePanel; - this.genericEntityProperties = genericEntityProperties; - } - - /** - * Import the patient level Generic Assay data - * - * @throws IOException IO Error. - * @throws DaoException Database Error. - */ - public void importData(int numLines) throws IOException, DaoException { - - geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - - FileReader reader = new FileReader(dataFile); - BufferedReader buf = new BufferedReader(reader); - String headerLine = buf.readLine(); - String parts[] = headerLine.split("\t"); - - int numRecordsToAdd = 0; - int patientsSkipped = 0; - try { - int patientStartIndex = getPatientIdStartColumnIndex(parts); - int genericAssayIdIndex = getGenericAssayIdIndex(parts); - if (genericAssayIdIndex == -1) { - throw new RuntimeException("Error: the following column should be present for this type of data: " + ENTITY_STABLE_ID_COLUMN_NAME); - } - - String patientIds[]; - patientIds = new String[parts.length - patientStartIndex]; - System.arraycopy(parts, patientStartIndex, patientIds, 0, parts.length - patientStartIndex); - - ProgressMonitor.setCurrentMessage(" --> total number of patients: " + patientIds.length); - - // link Samples associated with patients to the genetic profile - // 1. find samples associated with each patient - // 2. link samples to the genetic profile - ArrayList orderedSampleList = new ArrayList(); - int[][] numSamplesInPatient = new int[patientIds.length][1]; - int sampleCount = 0; - for (int i = 0; i < patientIds.length; i++) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(geneticProfile.getCancerStudyId(), patientIds[i]); - if (patient == null) { - throw new RuntimeException("Unknown patient id '" + StableIdUtil.getPatientId(patientIds[i]) + "' found in tab-delimited file: " + this.dataFile.getCanonicalPath()); - } else { - List samples = DaoSample.getSamplesByPatientId(patient.getInternalId()); - List sampleInternalIds = samples.stream().map(sample -> sample.getInternalId()).collect(Collectors.toList()); - for (int j = 0; j < sampleInternalIds.size(); j++) { - if (!DaoSampleProfile.sampleExistsInGeneticProfile(sampleInternalIds.get(j), geneticProfileId)) { - Integer genePanelID = (genePanel == null) ? null : GeneticProfileUtil.getGenePanelId(genePanel); - DaoSampleProfile.addSampleProfile(sampleInternalIds.get(j), geneticProfileId, genePanelID); - } - orderedSampleList.add(sampleInternalIds.get(j)); - } - numSamplesInPatient[i][0] = samples.size(); - sampleCount += samples.size(); - } - } - - ProgressMonitor.setCurrentMessage(" --> total number of data lines: " + (numLines-1)); - - DaoGeneticProfileSamples.addGeneticProfileSamples(geneticProfileId, orderedSampleList); - - //Object to insert records in the generic 'genetic_alteration' table: - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - - // load entities map from database - Map genericAssayStableIdToEntityIdMap = GenericAssayMetaUtils.buildGenericAssayStableIdToEntityIdMap(); - - String line = buf.readLine(); - while (line != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - boolean recordAdded = false; - - recordAdded = parseGenericAssayLine(line, parts.length, patientStartIndex, genericAssayIdIndex, numSamplesInPatient, sampleCount, daoGeneticAlteration, genericAssayStableIdToEntityIdMap); - - // increment number of records added or entries skipped - if (recordAdded) { - numRecordsToAdd++; - } - else { - entriesSkipped++; - } - - line = buf.readLine(); - } - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - - if (entriesSkipped > 0) { - ProgressMonitor.setCurrentMessage(" --> total number of data entries skipped (see table below): " + entriesSkipped); - } - - if (numRecordsToAdd == 0) { - throw new DaoException ("Something has gone wrong! I did not save any records" + - " to the database!"); - } - } - finally { - buf.close(); - } - } - - /** - * Parses line for generic assay profile record and stores record in 'genetic_alteration' table. - * @param line row from the separated-text that contains one or more values on a single patient - * @param nrColumns - * @param patientStartIndex index of the first patient column - * @param genericAssayIdIndex index of the column that uniquely identifies a patient - * @param daoGeneticAlteration - * @return - * @throws DaoException - */ - - private boolean parseGenericAssayLine(String line, int nrColumns, int patientStartIndex, int genericAssayIdIndex, int[][] numSamplesInPatient, int sampleCount, DaoGeneticAlteration daoGeneticAlteration, Map genericAssayStableIdToEntityIdMap) throws DaoException { - - boolean recordIsStored = false; - - if (!line.startsWith("#") && line.trim().length() > 0) { - String[] parts = line.split("\t", -1); - - if (parts.length > nrColumns) { - if (line.split("\t").length > nrColumns) { - ProgressMonitor.logWarning("Ignoring line with more fields (" + parts.length - + ") than specified in the headers(" + nrColumns + "): \n"+parts[0]); - return false; - } - } - - String[] values = new String[sampleCount]; - int maxColumns = parts.length>nrColumns?nrColumns:parts.length; - int currentIndex = 0; - for (int i = patientStartIndex; i < maxColumns; i++) { - int patientIndex = i - patientStartIndex; - if (patientIndex < numSamplesInPatient.length) { - for (int j = 0; j < numSamplesInPatient[patientIndex][0]; j++) { - values[currentIndex] = parts[i]; - currentIndex++; - } - } - } - - // trim whitespace from values - values = Stream.of(values).map(String::trim).toArray(String[]::new); - - String stableId = parts[genericAssayIdIndex]; - Integer entityId = genericAssayStableIdToEntityIdMap.getOrDefault(stableId, null); - - if (entityId == null) { - ProgressMonitor.logWarning("Generic Assay entity " + parts[genericAssayIdIndex] + " not found in DB. Record will be skipped."); - } else { - recordIsStored = storeGeneticEntityGeneticAlterations(values, daoGeneticAlteration, entityId, stableId); - } - - return recordIsStored; - } - - return recordIsStored; - } - - /** - * Stores genetic alteration data for a genetic entity. - * @param values - * @param daoGeneticAlteration - * @param geneticEntityId - internal id for genetic entity - * @param geneticEntityName - entity name for Generic Assay - * @return boolean indicating if record was stored successfully or not - */ - private boolean storeGeneticEntityGeneticAlterations(String[] values, DaoGeneticAlteration daoGeneticAlteration, - Integer geneticEntityId, String geneticEntityName) { - try { - if (importedGeneticEntitySet.add(geneticEntityId)) { - daoGeneticAlteration.addGeneticAlterationsForGeneticEntity(geneticProfile.getGeneticProfileId(), geneticEntityId, values); - return true; - } - else { - ProgressMonitor.logWarning("Data for genetic entity " + geneticEntityName - + " [" + EntityType.GENERIC_ASSAY +"] already imported from file. Record will be skipped."); - return false; - } - } - catch (Exception ex) { - throw new RuntimeException("Aborted: Error found for row starting with " + geneticEntityName + ": " + ex.getMessage()); - } - } - - private int getGenericAssayIdIndex(String[] headers) { - return getColIndexByName(headers, ENTITY_STABLE_ID_COLUMN_NAME); - } - - // helper function for finding the index of a column by name - private int getColIndexByName(String[] headers, String colName) { - for (int i=0; i featureColNames = new ArrayList(); - featureColNames.add(ENTITY_STABLE_ID_COLUMN_NAME); - - // add genericEntityProperties as feature colums - if (genericEntityProperties != null && genericEntityProperties.trim().length() != 0) { - String[] propertyNames = genericEntityProperties.trim().split(","); - featureColNames.addAll(Arrays.asList(propertyNames)); - } - - int startIndex = -1; - - for (int i=0; i e.equalsIgnoreCase(h)) - && i > startFeatureCol) { - //then we consider this the start of the patient columns: - startIndex = i; - break; - } - } - if (startIndex == -1) - throw new RuntimeException("Could not find a patient column in the file"); - - return startIndex; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenesetData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenesetData.java deleted file mode 100644 index f912fa7793d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenesetData.java +++ /dev/null @@ -1,325 +0,0 @@ -/* - * Copyright (c) 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/** - * @author ochoaa - * @author Sander Tan - */ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import joptsimple.*; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.Geneset; -import org.mskcc.cbio.portal.util.ProgressMonitor; - - -public class ImportGenesetData extends ConsoleRunnable { - - public static int skippedGenes; - - @Override - public void run() { - try { - String progName = "ImportGenesetData"; - String description = "Import gene set data files."; - // usage: --data --supp - // optional: --new-version - // --update-info - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts("data", "Geneset data file") - .withRequiredArg().ofType(String.class); - OptionSpec supp = parser.accepts("supp", "Option gene set supplemental data file") - .withRequiredArg().ofType(String.class); - OptionSpec newVersionArgument = parser.accepts("new-version", "New version of gene sets. This will REMOVE GSVA data and hierarchy.") - .withRequiredArg().ofType(String.class); - parser.accepts("update-info", "Only update the info of gene sets (Ref Link, name, description)"); - - // For testing purposes, we don't want the prompt, so make extra argument. - parser.accepts("confirm-delete-all-genesets-hierarchy-genesetprofiles", "This will avoid the command prompt being shown."); - - OptionSet options = null; - try { - options = parser.parse(args); - } - catch (Exception ex) { - throw new UsageException( - progName, description, parser, - ex.getMessage()); - } - - // if neither option was set then throw UsageException - if (!options.has(data) && !options.has(supp)) { - throw new UsageException( - progName, description, parser, - "'data' and/or 'supp' argument required"); - } - - // Check options - boolean updateInfo = options.has("update-info"); - boolean newVersion = options.has("new-version"); - boolean confirmEmptyGenesets = options.has("confirm-delete-all-genesets-hierarchy-genesetprofiles"); - - // Check current version - String databaseGenesetVersion = DaoInfo.getGenesetVersion(); - - // Check new version - String newGenesetVersion = options.valueOf(newVersionArgument); - - // Required to specify if we update info or add new version - if ((!updateInfo && !newVersion) || (updateInfo && newVersion)) { - throw new UsageException( - progName, description, parser, - "Please specify 1 of 2 options:\n" + - "--update-info Only update gene info (Ref Link, name, description). Genes will not be updated.\n" + - "--new-version Import new gene set version. This will REMOVE all previous loaded gene sets, gene set genetic profiles and gene set hierarchy.\n"); - - // In case of updating info only - } else if (updateInfo) { - - // Check if there is something in the database before updating - if (databaseGenesetVersion == null) { - throw new UsageException( - progName, description, parser, - "Attempted to update gene sets, but gene set tables are empty. You can import with --new-version "); - } - - ProgressMonitor.setCurrentMessage("Updating gene set information.\n"); - - // Only update info - startImport(options, data, supp, updateInfo, newVersion); - - // In case of new version - } else { - - // Check if gene set tables are empty. In that case, it's not necessary to ask user to remove previous data. - if (databaseGenesetVersion == null) { - ProgressMonitor.setCurrentMessage("New version of gene sets specified. Loading to empty database."); - DaoGeneset.deleteAllRecords(); - - ProgressMonitor.setCurrentMessage("Adding new gene sets.\n"); - startImport(options, data, supp, updateInfo, newVersion); - DaoInfo.setGenesetVersion(newGenesetVersion); - - } else { - // If automatic confirm is not set, prompt the user with question to confirm. - if (!confirmEmptyGenesets) { - ProgressMonitor.setCurrentMessage("Are you sure you want to remove all previous gene sets, gene set hierarchy and gene set genetic profiles?"); - ProgressMonitor.setCurrentMessage("Type `yes` to continue or anything else to abort."); - - try (Scanner scanner = new Scanner(System.in)) { - - String confirmEmptyingGenesets = scanner.next().toLowerCase(); - if (confirmEmptyingGenesets.equals("yes")) { - confirmEmptyGenesets = true; - } else { - ProgressMonitor.setCurrentMessage("Replacing existing gene sets not confirmed; aborting."); - return; - } - } - } else { - ProgressMonitor.setCurrentMessage("Auto confirm to empty gene sets, gene set hierarchy and gene set genetic profiles is set."); - } - - // Empty gene set tables and import new gene sets - ProgressMonitor.setCurrentMessage("New version of gene sets specified.\nRemoving old gene sets, gene set hierarchy and gene set genetic profiles."); - - DaoGeneset.deleteAllRecords(); - ProgressMonitor.setCurrentMessage("Adding new gene sets."); - startImport(options, data, supp, updateInfo, newVersion); - DaoInfo.setGenesetVersion(newGenesetVersion); - } - ProgressMonitor.setCurrentMessage("It is now possible to import gene set hierarchy data and gene set genetic profiles such as GSVA scores."); - } - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Start import process for gene set file and supplementary file. - */ - // TODO Exception should be handled by the callling code. Remove - // handling of exception and replace with `throw` statement. - public static void startImport(OptionSet options, OptionSpec data, OptionSpec supp, boolean updateInfo, boolean newVersion){ - try { - if (options.hasArgument(data)) { - File genesetFile = new File(options.valueOf(data)); - importData(genesetFile, updateInfo, newVersion); - } - if (options.hasArgument(supp)) { - File genesetSuppFile = new File(options.valueOf(supp)); - importSuppGenesetData(genesetSuppFile); - } - } - catch (Exception ex) { - ex.printStackTrace(); - } - - } - - /** - * Imports data from gene set file. - * @param genesetFile - * @param allowUpdates - * @param version - * @throws Exception - */ - public static int importData(File genesetFile, boolean updateInfo, boolean newVersion) throws Exception { - - ProgressMonitor.setCurrentMessage("Reading data from: " + genesetFile.getCanonicalPath()); - - // read gene set data file - note: this file does not contain headers - FileReader reader = new FileReader(genesetFile); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); - - - while (line != null) { - String[] parts = line.split("\t"); - - // assumed that gene set id and ref link are the first two columns in file - Geneset geneset = new Geneset(); - geneset.setExternalId(parts[0]); - geneset.setRefLink(parts[1]); - - // by default name and desciption are the same as external id, and can be overriden in importSuppGenesetData: - geneset.setName(geneset.getExternalId()); - geneset.setDescription(geneset.getExternalId()); - - // parse entrez ids for gene set - Set genesetGenes = new HashSet(); - for (int i=2; i 0) { - ProgressMonitor.setCurrentMessage( - "\n" + skippedGenes + " times a gene was not found in local gene table. Possible reasons:\n\n" + - "1. The Entrez gene IDs are relatively new. Consider adding them to database.\n" + - "2. The Entrez gene IDs are deprecated. Consider updating gene sets and recalculating GSVA scores.\n" + - "3. Invalid Entrez gene IDs. Please check .gmt file to verify genes are in Entrez gene ID format.\n\n"); - } - - ProgressMonitor.setCurrentMessage("Finished loading gene sets.\n"); - - return skippedGenes; - } - - /** - * Imports supplemental gene set data from supp file. - * @param suppFile - * @throws Exception - */ - static void importSuppGenesetData(File suppFile) throws Exception { - - ProgressMonitor.setCurrentMessage("Reading data from: " + suppFile.getCanonicalPath()); - - // read supplemental gene set data file - note: this file does not contain headers - FileReader reader = new FileReader(suppFile); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); - - while (line != null) { - String[] parts = line.split("\t"); - - // assumed that fields contain: geneset id, name, short name - Geneset geneset = DaoGeneset.getGenesetByExternalId(parts[0]); - - // if gene set does not already exist then alert user and skip record - if (geneset == null) { - ProgressMonitor.logWarning("Could not find gene set " + parts[0] + " in DB. Record will be skipped."); - } - else { - // update name and short name for gene set - geneset.setName(parts[1]); - geneset.setDescription(parts[2]); - - // update gene set record in db without updating gene set genes - DaoGeneset.updateGeneset(geneset, false); - } - - line = buf.readLine(); - } - // close file - reader.close(); - - ProgressMonitor.setCurrentMessage("Finished loading supplementary gene set info.\n"); - } - - public ImportGenesetData(String[] args) { - super(args); - } - - public static void main(String[] args) { - ConsoleRunnable runner = new ImportGenesetData(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenesetHierarchy.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenesetHierarchy.java deleted file mode 100644 index a9a21247052..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGenesetHierarchy.java +++ /dev/null @@ -1,210 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * @author Sander Tan - */ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import joptsimple.*; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.Geneset; -import org.mskcc.cbio.portal.model.GenesetHierarchy; -import org.mskcc.cbio.portal.model.GenesetHierarchyLeaf; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.yaml.snakeyaml.Yaml; - -public class ImportGenesetHierarchy extends ConsoleRunnable { - - @Override - public void run() { - try { - String progName = "ImportGenesetHierarchy"; - String description = "Import gene set hierarchy files in YAML format."; - // usage: --data - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts("data", "Gene set hierarchy data (.yaml)") - .withRequiredArg().ofType(String.class); - - OptionSet options = null; - try { - options = parser.parse(args); - } - catch (Exception ex) { - throw new UsageException( - progName, description, parser, - ex.getMessage()); - } - - // if neither option was set then throw UsageException - if (!options.has(data)) { - throw new UsageException( - progName, description, parser, - "'data' argument required"); - } - - File genesetFile = new File(options.valueOf(data)); - ProgressMonitor.setCurrentMessage("Input file:\n" + genesetFile.getPath() + "\n"); - - // First validate if gene sets in the hierarchy file, are in database. Therefore start an import process - // with validation set to 'true'. This will mock the import process and checks the gene sets. - boolean validate = true; - importData(genesetFile, validate); - - // Check if gene set hierarchy tables are already filled - boolean filledGeneSetHierarchyTables = DaoGenesetHierarchyNode.checkGenesetHierarchy(); - - // If gene set hierarchy tables are already filled, ask if this data can be discarded - if (filledGeneSetHierarchyTables) { - - // Asks if used wants to continue - ProgressMonitor.setCurrentMessage("Previous gene set hierarchy found. Do you want to remove previous hierarchy and continue importing new hierarchy?"); - ProgressMonitor.setCurrentMessage("Type `yes` to continue or anything else to abort."); - - try (Scanner scanner = new Scanner(System.in)) { - - String confirmEmptyingGenesetHierarchy = scanner.next().toLowerCase(); - if (!confirmEmptyingGenesetHierarchy.equals("yes")) { - ProgressMonitor.setCurrentMessage("Replacing the gene set hierarchy not confirmed; aborting."); - return; - } - } - - ProgressMonitor.setCurrentMessage("Emptying `geneset_hierarchy_node` and `geneset_hierarchy_leaf` before filling with new data.\n"); - DaoGenesetHierarchyNode.deleteAllGenesetHierarchyRecords(); - } - - // Start the gene set hierarchy import process - validate = false; - importData(genesetFile, validate); - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Imports data from gene set hierarchy file. - */ - public static void importData(File genesetFile, boolean validate) throws Exception { - - // Load data and parse with snakeyaml - InputStream input = new FileInputStream(genesetFile); - Yaml yaml = new Yaml(); - Map genesetTree = (Map) yaml.load(input); - input.close(); - - // Initiate start nodeId to give to first iteration. - int nodeIds = 0; - - // Parse the tree and import to geneset_hierarchy_node - parseTree(genesetTree, nodeIds, validate); - } - - /** - * Parses data from gene set hierarchy file and saves in database. - * @throws DaoException - */ - private static void parseTree(Map genesetTree, int parentNodeId, boolean validate) throws DaoException { - - // Create set with child nodes - Set childNodes = genesetTree.keySet(); - - // Iterate over the child nodes at this level - for (String childNode: childNodes) { - - // Add leaf for gene sets - if (childNode.equals("Gene sets")) { - - // Iterate over gene sets - for (String genesetName: (List) genesetTree.get("Gene sets")) { - - // Retrieve gene set from database - Geneset geneset = DaoGeneset.getGenesetByExternalId(genesetName); - - // Check if gene set is in database - if (geneset != null) { - - // Only write gene set to database when not validating - if (!validate) { - GenesetHierarchyLeaf genesetHierarchyLeaf = new GenesetHierarchyLeaf(); - genesetHierarchyLeaf.setNodeId(parentNodeId); - genesetHierarchyLeaf.setGenesetId(geneset.getId()); - - // Add leaf to geneset_hierarchy_leaf - ProgressMonitor.setCurrentMessage("Parent ID: " + parentNodeId + ", Gene set ID: " + genesetName); - DaoGenesetHierarchyLeaf.addGenesetHierarchyLeaf(genesetHierarchyLeaf); - } - } else { - throw new RuntimeException("\nGene set `" + genesetName + "` not in `geneset` table in database. Please add it first before adding tree containing it."); - } - } - - // Add nodes for (sub)categories - } else { - - try { - int childNodeId; - if (!validate) { - GenesetHierarchy genesetHierarchy = new GenesetHierarchy(); - genesetHierarchy.setNodeName(childNode); - genesetHierarchy.setParentId(parentNodeId); - - // Add node to geneset_hierarchy_node - DaoGenesetHierarchyNode.addGenesetHierarchy(genesetHierarchy); - - // Get node ID - childNodeId = genesetHierarchy.getNodeId(); - ProgressMonitor.setCurrentMessage("Node ID: " + childNodeId + ", Node name: " + childNode + ", Parent ID: " + parentNodeId); - } else{ - // Initiate childNodeId, necessary to test if GenesetId is present during validation - // , because true childNodeId will not be retrieved since no database connection is made. - childNodeId = 0; - } - - // Go into the node - parseTree((Map) genesetTree.get(childNode), childNodeId, validate); - - } catch (DaoException e) { - throw new DaoException(e); - } - } - } - } - - public ImportGenesetHierarchy(String[] args) { - super(args); - } - - public static void main(String[] args) { - ConsoleRunnable runner = new ImportGenesetHierarchy(args); - runner.runInConsole(); - } -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGisticData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGisticData.java deleted file mode 100644 index e35a9ed6dad..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGisticData.java +++ /dev/null @@ -1,116 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.ArrayList; - -import org.mskcc.cbio.portal.model.Gistic; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.validate.validationException; - -import joptsimple.OptionSet; - - -/** - * Command line utility for importing (amp/del) Gistic data - */ -public class ImportGisticData extends ConsoleRunnable { - - public void run () { - try { - String description = "Import GISTIC data.\n" + - " Note that gistic-data-file.txt must be a massaged file, it does not come straight from the Broad"; - - OptionSet options = ConsoleUtil.parseStandardDataAndStudyOptions(args, description); - String dataFile = (String) options.valueOf("data"); - String studyId = (String) options.valueOf("study"); - - SpringUtil.initDataSource(); - - File gistic_f = new File(dataFile); - int cancerStudyInternalId = ValidationUtils.getInternalStudyId(studyId); - - ProgressMonitor.setCurrentMessage( - "Reading data from: " + gistic_f.getAbsolutePath()); - ProgressMonitor.setCurrentMessage( - "CancerStudyId: " + cancerStudyInternalId); - - int lines = FileUtil.getNumLines(gistic_f); - ProgressMonitor.setCurrentMessage( - " --> total number of lines: " + lines); - ProgressMonitor.setMaxValue(lines); - - GisticReader gisticReader = new GisticReader(); - ArrayList gistics = gisticReader.parse(gistic_f, cancerStudyInternalId); - - if (gistics == null) { - throw new RuntimeException("Error: didn't get any data"); - } - - // add to CGDS database - for (Gistic g : gistics) { - try { - DaoGistic.addGistic(g); - } catch (validationException e) { - // only catching validationException, not DaoException - ProgressMonitor.logWarning("Error: " + e.getMessage() + ". Skipping record."); - } - } - } catch (RuntimeException e) { - throw e; - } catch (IOException|DaoException e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportGisticData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportGisticData(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportHprd.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportHprd.java deleted file mode 100644 index 1cbe26aaa76..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportHprd.java +++ /dev/null @@ -1,144 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.io.*; - -/** - * Command Line to Import HPRD Interactions. - * - * @author Ethan Cerami. - */ -public class ImportHprd { - private File hprdFile; - - /** - * Constructor. - * - * @param hprdFile SIF File. - */ - public ImportHprd(File hprdFile) { - this.hprdFile = hprdFile; - } - - /** - * Imports the Interaction Data. - * @throws java.io.IOException IO Error. - * @throws org.mskcc.cbio.portal.dao.DaoException Database Error. - */ - public void importData() throws IOException, DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - int numInteractionsSaved = 0; - int numInteractionsNotSaved = 0; - - MySQLbulkLoader.bulkLoadOn(); - FileReader reader = new FileReader(hprdFile); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); - while (line != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#")) { - String parts[] = line.split("\t"); - - String geneAId = parts[0]; - String geneBId = parts[3]; - String interactionType = "INTERACTS_WITH"; - String dataSource = "HPRD"; - String expTypes = parts[6]; - String pmids = parts[7]; - - CanonicalGene geneA = daoGene.getNonAmbiguousGene(geneAId, true); - CanonicalGene geneB = daoGene.getNonAmbiguousGene(geneBId, true); - - // Log genes that we cannot identify. - if (geneA == null) { - ProgressMonitor.logWarning("Cannot identify gene: " + geneAId); - } - if (geneB == null) { - ProgressMonitor.logWarning("Cannot identify gene: " + geneBId); - } - - if (geneA != null && geneB != null) { - numInteractionsSaved++; - } else { - numInteractionsNotSaved++; - } - } - line = buf.readLine(); - } - - // Flush database - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - ProgressMonitor.setCurrentMessage("Total number of interactions saved: " + numInteractionsSaved); - ProgressMonitor.setCurrentMessage("Total number of interactions not saved, due to " + - "invalid gene IDs: " + numInteractionsNotSaved); - } - - /** - * Command Line Util. - * @param args Command Line Arguments. - */ - public static void main(String[] args) { - if (args.length < 1) { - System.out.println("command line usage: importHprd.pl "); - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - return; - } - ProgressMonitor.setConsoleModeAndParseShowProgress(args); - SpringUtil.initDataSource(); - - try { - File geneFile = new File(args[0]); - System.out.println("Reading interactions from: " + geneFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(geneFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportHprd parser = new ImportHprd(geneFile); - parser.importData(); - } catch (IOException e) { - e.printStackTrace(); - } catch (DaoException e) { - e.printStackTrace(); - } finally { - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportMicroRNAIDs.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportMicroRNAIDs.java deleted file mode 100644 index 929565fee6e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportMicroRNAIDs.java +++ /dev/null @@ -1,120 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.*; - -/** - * Command Line Tool to Import Background Gene Data. - */ -public class ImportMicroRNAIDs { - - public static void importData(File geneFile) throws IOException, DaoException { - MySQLbulkLoader.bulkLoadOff(); - FileReader reader = new FileReader(geneFile); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); // skip first line - SpringUtil.initDataSource(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - List mirnas = new ArrayList(); - - while ((line=buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#")) { - String parts[] = line.split("\t"); - - String geneSymbol = parts[2]; - - Set aliases = new HashSet(); - setAliases(parts[0],aliases); - - if (!parts[0].equalsIgnoreCase(parts[1])) { - setAliases(parts[1],aliases); - } - - CanonicalGene mirna = new CanonicalGene(geneSymbol,aliases); - mirna.setType(CanonicalGene.MIRNA_TYPE); - mirnas.add(mirna); - } - } - - for (CanonicalGene mirna : mirnas) { - daoGene.addGene(mirna); - } - } - - private static void setAliases(String hsa, Set aliases) { - aliases.add(hsa); - if (hsa.startsWith("hsa-")) { - String mir = hsa.substring(4).toUpperCase(); - aliases.add(mir); - aliases.add(getHUGOInNCBIFile(mir)); - } - } - - private static String getHUGOInNCBIFile(String mir) { - StringBuilder sb = new StringBuilder(); - sb.append("MIR"); - if (mir.startsWith("LET")) { - sb.append("LET"); - } - - int ix = mir.indexOf("-"); - sb.append(mir.substring(ix+1)); - return sb.toString(); - } - - public static void main(String[] args) throws Exception { - System.err.println("This script will be called from ImportGeneData"); -// if (args.length == 0) { -// System.out.println("command line usage: importMicroRNAIDs.pl "); -// return; -// } -// ProgressMonitor.setConsoleMode(true); -// -// File geneFile = new File(args[0]); -// System.out.println("Reading data from: " + geneFile.getAbsolutePath()); -// int numLines = FileUtil.getNumLines(geneFile); -// System.out.println(" --> total number of lines: " + numLines); -// ProgressMonitor.setMaxValue(numLines); -// ImportMicroRNAIDs.importData(geneFile); -// ConsoleUtil.showWarnings(); -// System.err.println("Done."); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportMutSigData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportMutSigData.java deleted file mode 100644 index f03f751f27b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportMutSigData.java +++ /dev/null @@ -1,94 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.util.*; - -import joptsimple.OptionSet; - -import java.io.File; -import java.io.IOException; - -/** - * ImportMutSig is used to import the Broad Institute's MutSig data into our CGDS SQL database. - * Command line users must specify a MutSig file, and properties file containing a CancerID (InternalId) - * - * @author Lennart Bastian, Gideon Dresdner - */ -public class ImportMutSigData extends ConsoleRunnable { - public void run() { - try { - String description = "Import MUTSIG data"; - - OptionSet options = ConsoleUtil.parseStandardDataAndStudyOptions(args, description); - String dataFile = (String) options.valueOf("data"); - String studyId = (String) options.valueOf("study"); - SpringUtil.initDataSource(); - - File mutSigFile = new File(dataFile); - ProgressMonitor.setCurrentMessage( - "Reading data from: " + mutSigFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(mutSigFile); - ProgressMonitor.setCurrentMessage( - " --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - - int internalId = ValidationUtils.getInternalStudyId(studyId); - MutSigReader.loadMutSig(internalId, mutSigFile); - } catch (RuntimeException e) { - throw e; - } catch (IOException|DaoException e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportMutSigData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportMutSigData(args); - runner.runInConsole(); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportPathwayCommonsExtSif.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportPathwayCommonsExtSif.java deleted file mode 100644 index a17f783b85f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportPathwayCommonsExtSif.java +++ /dev/null @@ -1,141 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.io.*; - -/** - * Command Line to Import HPRD Interactions. - * - * @author Ethan Cerami. - */ -public class ImportPathwayCommonsExtSif { - private File sifFile; - - /** - * Constructor. - * - * @param sifFile SIF File. - */ - public ImportPathwayCommonsExtSif(File sifFile) { - this.sifFile = sifFile; - } - - /** - * Imports the Interaction Data. - * @throws java.io.IOException IO Error. - * @throws org.mskcc.cbio.portal.dao.DaoException Database Error. - */ - public void importData() throws IOException, DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - int numInteractionsSaved = 0; - int numInteractionsNotSaved = 0; - - MySQLbulkLoader.bulkLoadOn(); - FileReader reader = new FileReader(sifFile); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); // skip the first line - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - - String parts[] = line.split("\t"); - - if (parts.length<4) { - continue; - } - - String geneAId = parts[0]; - - CanonicalGene geneA = daoGene.getNonAmbiguousGene(geneAId, true); - if (geneA != null) { - String geneBId = parts[2]; - CanonicalGene geneB = daoGene.getNonAmbiguousGene(geneBId, true); - - if (geneB != null) { - String interactionType = parts[1]; - String dataSource = parts[3]; - String pmids = parts.length<=4 ? null : parts[4].replaceAll(";", ","); - String expTypes = null; - numInteractionsNotSaved++; - } else { - numInteractionsNotSaved++; - } - } else { - numInteractionsNotSaved++; - } - } - - // Flush database - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - ProgressMonitor.setCurrentMessage("Total number of interactions saved: " + numInteractionsSaved); - ProgressMonitor.setCurrentMessage("Total number of interactions not saved, due to " + - "invalid gene IDs: " + numInteractionsNotSaved); - } - - /** - * Command Line Util. - * @param args Command Line Arguments. - */ - public static void main(String[] args) { - if (args.length < 1) { - System.out.println("command line usage: importHprd.pl "); - return; - } - ProgressMonitor.setConsoleMode(true); - SpringUtil.initDataSource(); - - try { - File sifFile = new File(args[0]); - System.out.println("Reading interactions from: " + sifFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(sifFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportPathwayCommonsExtSif parser = new ImportPathwayCommonsExtSif(sifFile); - parser.importData(); - } catch (IOException e) { - e.printStackTrace(); - } catch (DaoException e) { - e.printStackTrace(); - } finally { - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportProfileData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportProfileData.java deleted file mode 100644 index 54ce204e5b9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportProfileData.java +++ /dev/null @@ -1,191 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.Set; - -import joptsimple.*; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -import static org.cbioportal.model.MolecularProfile.ImportType.DISCRETE_LONG; - -/** - * Import 'profile' files that contain data matrices indexed by gene, case. - * - * @author ECerami - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class ImportProfileData extends ConsoleRunnable { - - public void run() { - DaoGeneOptimized daoGene; - DaoGeneticAlteration daoGeneticAlteration; - try { - daoGene = DaoGeneOptimized.getInstance(); - daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - } catch (DaoException e) { - throw new RuntimeException("Could not create dao instances", e); - } - - try { - // Parse arguments - // using a real options parser, helps avoid bugs - String description = "Import 'profile' files that contain data matrices indexed by gene, case"; - OptionSet options = ConsoleUtil.parseStandardDataAndMetaUpdateOptions(args, description, true); - File dataFile = new File((String) options.valueOf("data")); - File descriptorFile = new File((String) options.valueOf( "meta" ) ); - // Check options, set default as false - boolean updateInfo = false; - if (options.has("update-info") && (((String) options.valueOf("update-info")).equalsIgnoreCase("true") || options.valueOf("update-info").equals("1"))) { - updateInfo = true; - } - SpringUtil.initDataSource(); - ProgressMonitor.setCurrentMessage("Reading data from: " + dataFile.getAbsolutePath()); - // Load genetic profile and gene panel - GeneticProfile geneticProfile = null; - String genePanel = null; - try { - geneticProfile = GeneticProfileReader.loadGeneticProfile( descriptorFile ); - genePanel = GeneticProfileReader.loadGenePanelInformation( descriptorFile ); - } catch (java.io.FileNotFoundException e) { - throw new java.io.FileNotFoundException("Descriptor file '" + descriptorFile + "' not found."); - } - - // Print profile report - int numLines = FileUtil.getNumLines(dataFile); - ProgressMonitor.setCurrentMessage( - " --> profile id: " + geneticProfile.getGeneticProfileId() + - "\n --> profile name: " + geneticProfile.getProfileName() + - "\n --> genetic alteration type: " + geneticProfile.getGeneticAlterationType().name()); - ProgressMonitor.setMaxValue(numLines); - - // Check genetic alteration type - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MUTATION_EXTENDED || - geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MUTATION_UNCALLED) { - Set filteredMutations = GeneticProfileReader.getVariantClassificationFilter( descriptorFile ); - Set namespaces = GeneticProfileReader.getNamespaces( descriptorFile ); - ImportExtendedMutationData importer = new ImportExtendedMutationData(dataFile, geneticProfile.getGeneticProfileId(), genePanel, filteredMutations, namespaces); - String swissprotIdType = geneticProfile.getOtherMetaDataField("swissprot_identifier"); - if (swissprotIdType != null && swissprotIdType.equals("accession")) { - importer.setSwissprotIsAccession(true); - } else if (swissprotIdType != null && !swissprotIdType.equals("name")) { - throw new RuntimeException( "Unrecognized swissprot_identifier specification, must be 'name' or 'accession'."); - } - importer.importData(); - } else if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.STRUCTURAL_VARIANT) { - Set namespaces = GeneticProfileReader.getNamespaces(descriptorFile); - ImportStructuralVariantData importer = new ImportStructuralVariantData( - dataFile, - geneticProfile.getGeneticProfileId(), - genePanel, - namespaces - ); - importer.importData(); - } else if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.GENERIC_ASSAY) { - // add all missing `genetic_entities` for this assay to the database - ImportGenericAssayEntity.importData(dataFile, geneticProfile.getGeneticAlterationType(), geneticProfile.getOtherMetaDataField("generic_entity_meta_properties"), updateInfo); - // use a different importer for patient level data - String patientLevel = geneticProfile.getOtherMetaDataField("patient_level"); - if (patientLevel != null && patientLevel.trim().toLowerCase().equals("true")) { - ImportGenericAssayPatientLevelData genericAssayProfileImporter = new ImportGenericAssayPatientLevelData(dataFile, geneticProfile.getTargetLine(), geneticProfile.getGeneticProfileId(), genePanel, geneticProfile.getOtherMetaDataField("generic_entity_meta_properties")); - genericAssayProfileImporter.importData(numLines); - } else { - // use ImportTabDelimData importer for non-patient level data - ImportTabDelimData genericAssayProfileImporter = new ImportTabDelimData( - dataFile, - geneticProfile.getTargetLine(), - geneticProfile.getGeneticProfileId(), - genePanel, - geneticProfile.getOtherMetaDataField("generic_entity_meta_properties"), - daoGeneticAlteration - ); - genericAssayProfileImporter.importData(numLines); - } - } else if( - geneticProfile.getGeneticAlterationType() == GeneticAlterationType.COPY_NUMBER_ALTERATION - && DISCRETE_LONG.name().equals(geneticProfile.getDatatype()) - ) { - Set namespaces = GeneticProfileReader.getNamespaces(descriptorFile); - ImportCnaDiscreteLongData importer = new ImportCnaDiscreteLongData( - dataFile, - geneticProfile.getGeneticProfileId(), - genePanel, - daoGene, - daoGeneticAlteration, - namespaces - ); - importer.importData(); - } else { - ImportTabDelimData importer = new ImportTabDelimData( - dataFile, - geneticProfile.getTargetLine(), - geneticProfile.getGeneticProfileId(), - genePanel, - daoGeneticAlteration - ); - String pdAnnotationsFilename = geneticProfile.getOtherMetaDataField("pd_annotations_filename"); - if (pdAnnotationsFilename != null && !"".equals(pdAnnotationsFilename)) { - importer.setPdAnnotationsFile(new File(dataFile.getParent(), pdAnnotationsFilename)); - } - importer.importData(numLines); - } - } - catch (Exception e) { - e.printStackTrace(); - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportProfileData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportProfileData(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportReferenceGenome.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportReferenceGenome.java deleted file mode 100644 index 1230608a166..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportReferenceGenome.java +++ /dev/null @@ -1,177 +0,0 @@ -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.scripts; - -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.ReferenceGenome; -import org.mskcc.cbio.portal.util.*; - -import joptsimple.OptionException; -import joptsimple.OptionParser; -import joptsimple.OptionSet; -import joptsimple.OptionSpec; - -import java.io.*; -import java.util.*; -import java.text.SimpleDateFormat; -import java.text.ParseException; - -/** - * Command Line Tool to Import Reference Genome Used by Molecular Profiling. - */ -public class ImportReferenceGenome extends ConsoleRunnable { - - /** - * Adds the genes parsed from the file into the Database. - * @param referenceGenomeFile File with reference genome information - * @throws IOException - * @throws DaoException - */ - public static void importData(File referenceGenomeFile) throws IOException, DaoException, ParseException { - - try (FileReader reader = new FileReader(referenceGenomeFile)) { - BufferedReader buf = new BufferedReader(reader); - String line; - Set referenceGenomes = new HashSet(); - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (line.startsWith("#")) { - continue; - } - String parts[] = line.split("\t"); - String species = parts[0]; - String name = parts[1]; - String buildName = parts[2]; - String genomeSize = parts[3]; - String url = parts[4]; - String releaseDate = parts[5]; - - ReferenceGenome referenceGenome = new ReferenceGenome(name, species, buildName); - if (StringUtils.isNotEmpty(url)) { - referenceGenome.setUrl(url); - } - - if (StringUtils.isNotEmpty(genomeSize)) { - referenceGenome.setGenomeSize(Long.parseLong(genomeSize)); - } - - if (StringUtils.isNotEmpty(releaseDate)) { - SimpleDateFormat sdf = new SimpleDateFormat("yyyy-mm-dd"); - referenceGenome.setReleaseDate(sdf.parse(releaseDate)); - - } - referenceGenomes.add(referenceGenome); - } - addReferenceGenomesToDB(referenceGenomes); - } - } - - /** - * Iterate over the genes found in the given maps and try to add them to the DB. - * @param referenceGenomes: reference genomes - * @throws DaoException - */ - private static void addReferenceGenomesToDB(Set referenceGenomes) throws DaoException { - int nrExisting = 0; - for (ReferenceGenome refGenome: referenceGenomes) { - if (DaoReferenceGenome.getReferenceGenomeByInternalId(refGenome.getReferenceGenomeId()) != null) { - ProgressMonitor.logWarning("Reference genome updated"); - try { - DaoReferenceGenome.updateReferenceGenome(refGenome); - } catch (DaoException e) { - ProgressMonitor.logWarning("No change for " + refGenome.getGenomeName()); - } - } else { - ProgressMonitor.logWarning("New reference genome added"); - DaoReferenceGenome.addReferenceGenome(refGenome); - } - } - } - - @Override - public void run() { - try { - SpringUtil.initDataSource(); - - String description = "Update reference_genome table "; - - // using a real options parser, helps avoid bugs - OptionParser parser = new OptionParser(); - OptionSpec help = parser.accepts( "help", "print this help info" ); - parser.accepts( "ref-genome", "reference genome file" ).withRequiredArg().describedAs("reference_genomes.txt").ofType( String.class ); - - String progName = "importReferenceGenomes"; - OptionSet options = null; - try { - options = parser.parse( args ); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, - e.getMessage()); - } - - if( options.has( help ) ){ - throw new UsageException(progName, description, parser); - } - - ProgressMonitor.setConsoleMode(true); - - File referenceGenomeFile; - int numLines; - if(options.has("ref-genome")) { - File referenceFile = new File((String) options.valueOf("ref-genome")); - - System.out.println("Reading reference genome from: " + referenceFile.getAbsolutePath()); - numLines = FileUtil.getNumLines(referenceFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - MySQLbulkLoader.bulkLoadOn(); - ImportReferenceGenome.importData(referenceFile); - } - - MySQLbulkLoader.flushAll(); - System.err.println("Done. Restart tomcat to make sure the cache is replaced with the new data."); - - } - catch (RuntimeException e) { - throw e; - } - catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * @param args the command line arguments to be used - */ - public ImportReferenceGenome(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportReferenceGenome(args); - runner.runInConsole(); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportResourceData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportResourceData.java deleted file mode 100644 index d04124baa4a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportResourceData.java +++ /dev/null @@ -1,506 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -import java.io.*; -import joptsimple.*; -import java.util.*; -import java.util.regex.*; -import java.util.stream.Collectors; - -import org.apache.commons.collections4.map.MultiKeyMap; -import org.cbioportal.model.ResourceType; - -public class ImportResourceData extends ConsoleRunnable { - - public static final String DELIMITER = "\t"; - public static final String METADATA_PREFIX = "#"; - public static final String SAMPLE_ID_COLUMN_NAME = "SAMPLE_ID"; - public static final String PATIENT_ID_COLUMN_NAME = "PATIENT_ID"; - public static final String RESOURCE_ID_COLUMN_NAME = "RESOURCE_ID"; - public static final String URL_COLUMN_NAME = "URL"; - public static final String SAMPLE_TYPE_COLUMN_NAME = "SAMPLE_TYPE"; - private int numSampleSpecificResourcesAdded = 0; - private int numPatientSpecificResourcesAdded = 0; - private int numStudySpecificResourcesAdded = 0; - private int numEmptyResourcesSkipped = 0; - private int numSamplesProcessed = 0; - - private static Properties properties; - - private File resourceDataFile; - private CancerStudy cancerStudy; - private ResourceType resourceType; - private boolean relaxed; - private Set patientIds = new HashSet(); - - public void setFile(CancerStudy cancerStudy, File resourceDataFile, String resourceType, boolean relaxed) { - this.cancerStudy = cancerStudy; - this.resourceDataFile = resourceDataFile; - this.resourceType = ResourceType.valueOf(resourceType); - this.relaxed = relaxed; - } - - public void importData() throws Exception { - // if bulkLoading is ever turned off, - // code has to be added to check whether - // a resource data update should be - // perform instead of an insert - MySQLbulkLoader.bulkLoadOn(); - - if (relaxed) { - MySQLbulkLoader.relaxedModeOn(); - } - - FileReader reader = new FileReader(resourceDataFile); - BufferedReader buff = new BufferedReader(reader); - List resources = DaoResourceDefinition.getDatumByStudy(cancerStudy.getInternalId()); - String currentLine = buff.readLine(); - String[] headerNames = currentLine.split("\t"); - Map headerIndexMap = makeHeaderIndexMap(headerNames); - - int patientIdIndex = findPatientIdColumn(headerIndexMap); - int sampleIdIndex = findSampleIdColumn(headerIndexMap); - int resourceIdIndex = findResourceIdColumn(headerIndexMap); - int urlIndex = findURLColumn(headerIndexMap); - - // validate required columns: - if (resourceIdIndex < 0) { - throw new RuntimeException("Aborting owing to failure to find " + RESOURCE_ID_COLUMN_NAME - + " in file. Please check your file format and try again."); - } - if (urlIndex < 0) { - throw new RuntimeException("Aborting owing to failure to find " + URL_COLUMN_NAME - + " in file. Please check your file format and try again."); - } - if ((resourceType.equals(ResourceType.SAMPLE) || resourceType.equals(ResourceType.PATIENT)) && patientIdIndex < 0) { - // PATIENT_ID is required in both patient and sample file types: - throw new RuntimeException("Aborting owing to failure to find " + PATIENT_ID_COLUMN_NAME - + " in file. Please check your file format and try again."); - } - if (resourceType.equals(ResourceType.SAMPLE) && sampleIdIndex < 0) { - // SAMPLE_ID is required in SAMPLE file type: - throw new RuntimeException("Aborting owing to failure to find " + SAMPLE_ID_COLUMN_NAME - + " in file. Please check your file format and try again."); - } - importData(buff, resources, headerIndexMap); - buff.close(); - - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - MySQLbulkLoader.relaxedModeOff(); - } - } - - private void importData(BufferedReader buff, List resources, Map headerIndexMap) throws Exception { - String line; - MultiKeyMap resourceMap = new MultiKeyMap(); - // create resource_id set - Set patientResourceIdSet = resources - .stream() - .filter(resource -> resource.getResourceType().equals(ResourceType.PATIENT)) - .map(resource -> resource.getResourceId()) - .collect(Collectors.toSet()); - Set sampleResourceIdSet = resources - .stream() - .filter(resource -> resource.getResourceType().equals(ResourceType.SAMPLE)) - .map(resource -> resource.getResourceId()) - .collect(Collectors.toSet()); - Set studyResourceIdSet = resources - .stream() - .filter(resource -> resource.getResourceType().equals(ResourceType.STUDY)) - .map(resource -> resource.getResourceId()) - .collect(Collectors.toSet()); - - while ((line = buff.readLine()) != null) { - if (skipLine(line.trim())) { - continue; - } - - String[] fieldValues = getFieldValues(line, headerIndexMap); - addDatum(fieldValues, resources, resourceMap, headerIndexMap, patientResourceIdSet, sampleResourceIdSet, studyResourceIdSet); - } - } - - private boolean skipLine(String line) { - return (line.isEmpty() || line.substring(0, 1).equals(METADATA_PREFIX)); - } - - /** - * Takes in the given line and returns the list of field values by splitting the - * line on DELIMITER. - * - * @param line - * @param headerIndexMap - * @return the list of values, one for each column. Value will be "" for empty - * columns. - */ - private String[] getFieldValues(String line, Map headerIndexMap) { - // split on delimiter: - String[] fieldValues = line.split(DELIMITER, -1); - - // validate: if number of fields is incorrect, give exception - if (fieldValues.length != headerIndexMap.size()) { - throw new IllegalArgumentException("Number of columns in line is not as expected. Expected: " - + headerIndexMap.size() + " columns, found: " + fieldValues.length + ", for line: " + line); - } - - // now iterate over lines and trim each value: - for (int i = 0; i < fieldValues.length; i++) { - fieldValues[i] = fieldValues[i].trim(); - } - return fieldValues; - } - - private boolean addDatum(String[] fields, List resources, MultiKeyMap resourceMap, Map headerIndexMap, Set patientResourceIdSet, Set sampleResourceIdSet, Set studyResourceIdSet) - throws Exception { - int sampleIdIndex = findSampleIdColumn(headerIndexMap); - String stableSampleId = (sampleIdIndex >= 0) ? fields[sampleIdIndex] : ""; - stableSampleId = StableIdUtil.getSampleId(stableSampleId); - int patientIdIndex = findPatientIdColumn(headerIndexMap); - String stablePatientId = (patientIdIndex >= 0) ? fields[patientIdIndex] : ""; - stablePatientId = StableIdUtil.getPatientId(stablePatientId); - int resourceIdIndex = findResourceIdColumn(headerIndexMap); - int urlIndex = findURLColumn(headerIndexMap); - int internalSampleId = -1; - int internalPatientId = -1; - - // validate patient and sample for patient and sample attibutes - if (resourceType.equals(ResourceType.PATIENT) || resourceType.equals(ResourceType.SAMPLE)) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), stablePatientId); - if (patient != null) { - // patient exists, get internal id: - internalPatientId = patient.getInternalId(); - } else { - // add patient: if patient do not exist and resource type is sample - internalPatientId = (stablePatientId.length() > 0) ? addPatientToDatabase(stablePatientId) : -1; - } - - if (resourceType.equals(ResourceType.SAMPLE)) { - // check if sample is not already added: - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudy.getInternalId(), stableSampleId, false); - if (sample != null) { - // get internal sample id if sample exists - internalSampleId = sample.getInternalId(); - } else { - // sample is new, so attempt to add to DB - internalSampleId = (stableSampleId.length() > 0) ? addSampleToDatabase(stableSampleId, fields, headerIndexMap, internalPatientId) - : -1; - } - - // validate and count: - if (internalSampleId != -1) { - // some minimal validation/fail safe for now: only continue if patientId is same - // as patient id in - // existing sample (can occur in case of this.isSupplementalData or in case of - // parsing bug in addSampleToDatabase): - if (internalPatientId != DaoSample.getSampleById(internalSampleId).getInternalPatientId()) { - throw new RuntimeException("Error: Sample " + stableSampleId - + " was previously linked to another patient, and not to " + stablePatientId); - } - numSamplesProcessed++; - } - } - } - - // if the resource id or url matches one of the missing values, skip this resource: - if ((resourceIdIndex != -1 && MissingValues.has(fields[resourceIdIndex])) || (urlIndex != -1 && MissingValues.has(fields[urlIndex]))) { - numEmptyResourcesSkipped++; - } else { - // if patient_id column exists and resource type is patient - if (getResourceType() == ResourceType.PATIENT && internalPatientId != -1) { - validateAddDatum(internalPatientId, stablePatientId, fields[resourceIdIndex], fields[urlIndex], - ResourceType.PATIENT, patientResourceIdSet, resourceMap); - } - // if sample_id column exists and resource type is sample - else if (getResourceType() == ResourceType.SAMPLE && internalSampleId != -1) { - validateAddDatum(internalSampleId, stableSampleId, fields[resourceIdIndex], fields[urlIndex], - ResourceType.SAMPLE, sampleResourceIdSet, resourceMap); - } - // if resource type is study - else if (getResourceType() == ResourceType.STUDY) { - validateAddDatum(cancerStudy.getInternalId(), cancerStudy.getCancerStudyStableId(), fields[resourceIdIndex], fields[urlIndex], - ResourceType.STUDY, studyResourceIdSet, resourceMap); - } - } - return true; - } - - private Map makeHeaderIndexMap(String[] headerNames) { - Map headerIndexMap = new HashMap(); - for (int i= 0; i < headerNames.length; i++) { - headerIndexMap.put(headerNames[i], i); - } - return headerIndexMap; - } - - private int findPatientIdColumn(Map headerIndexMap) { - return findColumnIndexInHeaders(PATIENT_ID_COLUMN_NAME, headerIndexMap); - } - - private int findSampleIdColumn(Map headerIndexMap) { - return findColumnIndexInHeaders(SAMPLE_ID_COLUMN_NAME, headerIndexMap); - } - - private int findResourceIdColumn(Map headerIndexMap) { - return findColumnIndexInHeaders(RESOURCE_ID_COLUMN_NAME, headerIndexMap); - } - - private int findURLColumn(Map headerIndexMap) { - return findColumnIndexInHeaders(URL_COLUMN_NAME, headerIndexMap); - } - - private int findSampleTypeColumn(Map headerIndexMap) { - return findColumnIndexInHeaders(SAMPLE_TYPE_COLUMN_NAME, headerIndexMap); - } - - private int findColumnIndexInHeaders(String columnHeader, Map headerIndexMap) { - return headerIndexMap.getOrDefault(columnHeader, -1); - } - - private int addPatientToDatabase(String patientId) throws Exception { - int internalPatientId = -1; - - if (validPatientId(patientId)) { - // in case of PATIENT data import and patient == null : - if (getResourceType() == ResourceType.PATIENT) { - // not finding the patient it unexpected (as SAMPLE data import should always - // precede it), but - // can happen when this patient does not have any samples for example. In any - // case, warn about it: - ProgressMonitor.logWarning("Patient " + patientId - + " being added for the first time. Apparently this patient was not in the samples file, or the samples file is not yet loaded (should be loaded before this one)"); - } - internalPatientId = DaoPatient.addPatient(new Patient(cancerStudy, patientId)); - } - return internalPatientId; - } - - private int addSampleToDatabase(String sampleId, String[] fields, Map headerIndexMap, int internalPatientId) - throws Exception { - int sampleTypeIndex = findSampleTypeColumn(headerIndexMap); - String sampleTypeStr = (sampleTypeIndex != -1) ? fields[sampleTypeIndex] : null; - if (sampleTypeStr != null) { - // want to match Sample.Type enum names - sampleTypeStr = sampleTypeStr.trim().toUpperCase().replaceAll(" ", "_"); - } - Sample.Type sampleType = Sample.Type.has(sampleTypeStr) ? Sample.Type.valueOf(sampleTypeStr) : null; - - int internalSampleId = -1; - if (validSampleId(sampleId) && !StableIdUtil.isNormal(sampleId)) { - // want to try and capture normal sample types based on value for SAMPLE_TYPE - // if present in resource data - if (sampleType != null && sampleType.isNormal()) { - return internalSampleId; - } - sampleId = StableIdUtil.getSampleId(sampleId); - if (internalPatientId != -1) { - internalSampleId = DaoSample.addSample( - new Sample(sampleId, internalPatientId, sampleTypeStr)); - } - } - - return internalSampleId; - } - - private boolean validPatientId(String patientId) { - return (patientId != null && !patientId.isEmpty()); - } - - private boolean validSampleId(String sampleId) { - return (sampleId != null && !sampleId.isEmpty()); - } - - private void validateAddDatum(int internalId, String stableId, String resourceId, String resourceURL, ResourceType resourceType, Set resourceSet, MultiKeyMap resourceMap) throws Exception { - // throw exception if resource definition is not exist in the database - if (!resourceSet.contains(resourceId)) { - throw new RuntimeException("Error: " + resourceType.toString().toLowerCase() + " " + stableId - + " with resource " + resourceId - + " does not have matching resources information in database, please make sure to include resource definition in the resource definition file"); - } - // The resourceMap makes sure a pair of (internalId/resource_id/url) is unique - // added to the DB if there are no duplicates, - if (!resourceMap.containsKey(internalId, resourceId, resourceURL)) { - addDatum(internalId, resourceId, resourceURL,resourceType); - resourceMap.put(internalId, resourceId, resourceURL, resourceURL); - } - // handle duplicates - // if the "relaxed" flag was given, and the new record e.g. tries to ignore a duplicated resources and log a warning - else if (!relaxed) { - throw new RuntimeException("Error: Duplicated " + resourceType.toString().toLowerCase() + " resource in file"); - } - // log a warning - else if (!resourceMap.get(internalId, resourceId, resourceURL).equals(resourceURL)) { - ProgressMonitor.logWarning("Error: Duplicated " + resourceType.toString().toLowerCase() + " " + stableId - + " with different values for " + resourceType.toString().toLowerCase() + " resource " + resourceId - + "\n\tValues: " + resourceId + " " + resourceURL); - } - } - - // add datum for patient, sample and study resources - private void addDatum(int internalId, String resourceId, String resourceURL, ResourceType resourceType) throws Exception { - // if bulk loading is ever turned off, we need to check if - // resource value exists and if so, perfom an update - if (resourceType.equals(ResourceType.PATIENT)) { - numPatientSpecificResourcesAdded++; - DaoResourceData.addPatientDatum(internalId, resourceId, resourceURL); - } else if (resourceType.equals(ResourceType.SAMPLE)) { - numSampleSpecificResourcesAdded++; - DaoResourceData.addSampleDatum(internalId, resourceId, resourceURL); - } else { - numStudySpecificResourcesAdded++; - DaoResourceData.addStudyDatum(internalId, resourceId, resourceURL); - } - } - - public int getNumSampleSpecificResourcesAdded() { - return numSampleSpecificResourcesAdded; - } - - public int getNumPatientSpecificResourcesAdded() { - return numPatientSpecificResourcesAdded; - } - - public int getNumStudySpecificResourcesAdded() { - return numStudySpecificResourcesAdded; - } - - public int getNumEmptyResourcesSkipped() { - return numEmptyResourcesSkipped; - } - - public int getNumSamplesProcessed() { - return numSamplesProcessed; - } - - /** - * The type of resource found in the file. Basically the type of import - * running for this instance. Can be one of ResourceType. - * - * @return - */ - public ResourceType getResourceType() { - return resourceType; - } - - /** - * Imports resource definition and resource data (from the worksheet) - */ - public void run() { - try { - String progName = "importResourceData"; - String description = "Import resource files."; - // usage: --data --meta --loadMode - // [directLoad|bulkLoad (default)] [--noprogress] - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts("data", "profile data file").withRequiredArg() - .describedAs("data_file.txt").ofType(String.class); - OptionSpec meta = parser.accepts("meta", "meta (description) file").withOptionalArg() - .describedAs("meta_file.txt").ofType(String.class); - OptionSpec study = parser.accepts("study", "cancer study id").withOptionalArg().describedAs("study") - .ofType(String.class); - OptionSpec relaxedFlag = parser.accepts("r", - "(not recommended) Flag for relaxed mode, determining how to handle detected data harmonization problems in the same study") - .withOptionalArg().describedAs("r").ofType(String.class); - parser.accepts("loadMode", "direct (per record) or bulk load of data").withOptionalArg() - .describedAs("[directLoad|bulkLoad (default)]").ofType(String.class); - parser.accepts("noprogress", - "this option can be given to avoid the messages regarding memory usage and % complete"); - - OptionSet options = null; - try { - options = parser.parse(args); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, e.getMessage()); - } - File resourceFile = null; - if (options.has(data)) { - resourceFile = new File(options.valueOf(data)); - } else { - throw new UsageException(progName, description, parser, "'data' argument required."); - } - String resourceType = null; - boolean relaxed = false; - String cancerStudyStableId = null; - if (options.has(study)) { - cancerStudyStableId = options.valueOf(study); - } - if (options.has(meta)) { - properties = new TrimmedProperties(); - properties.load(new FileInputStream(options.valueOf(meta))); - resourceType = properties.getProperty("resource_type"); - cancerStudyStableId = properties.getProperty("cancer_study_identifier"); - } - if (options.has(relaxedFlag)) { - relaxed = true; - - } - SpringUtil.initDataSource(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId); - if (cancerStudy == null) { - throw new IllegalArgumentException("Unknown cancer study: " + cancerStudyStableId); - } - ProgressMonitor.setCurrentMessage("Reading data from: " + resourceFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(resourceFile); - ProgressMonitor.setCurrentMessage(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - - setFile(cancerStudy, resourceFile, resourceType, relaxed); - importData(); - - if (getResourceType() == ResourceType.PATIENT) { - ProgressMonitor.setCurrentMessage("Total number of patient specific resources added: " - + getNumPatientSpecificResourcesAdded()); - } - if (getResourceType() == ResourceType.SAMPLE) { - ProgressMonitor.setCurrentMessage("Total number of sample specific resources added: " - + getNumSampleSpecificResourcesAdded()); - ProgressMonitor.setCurrentMessage("Total number of samples processed: " + getNumSamplesProcessed()); - } - ProgressMonitor.setCurrentMessage("Total number of resource values skipped because of empty value: " - + getNumEmptyResourcesSkipped()); - if (getResourceType() == ResourceType.SAMPLE - && (getNumSampleSpecificResourcesAdded() + getNumSamplesProcessed()) == 0) { - // should not occur: - throw new RuntimeException("No sample resources data was added. " + "Please check your file format and try again."); - } - if (getResourceType() == ResourceType.PATIENT - && getNumPatientSpecificResourcesAdded() == 0) { - // could occur if patient resource file is given with only PATIENT_ID column: - throw new RuntimeException("No patient resources data was added. " - + "Please check your file format and try again. If you only have sample resources data, then a patients file with only PATIENT_ID column is not required."); - } - if (getResourceType() == ResourceType.STUDY - && getNumStudySpecificResourcesAdded() == 0) { - throw new RuntimeException("No study resource data was added. " - + "Please check your file format and try again."); - } - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportResourceData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportResourceData(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportResourceDefinition.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportResourceDefinition.java deleted file mode 100644 index 5811ee44ae9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportResourceDefinition.java +++ /dev/null @@ -1,338 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import org.cbioportal.model.ResourceType; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - -import java.io.*; -import joptsimple.*; -import java.util.*; - -public class ImportResourceDefinition extends ConsoleRunnable { - - public static final String DELIMITER = "\t"; - public static final String RESOURCE_ID_COLUMN_NAME = "RESOURCE_ID"; - public static final String DISPLAY_NAME_COLUMN_NAME = "DISPLAY_NAME"; - public static final String DESCRIPTION_COLUMN_NAME = "DESCRIPTION"; - public static final String RESOURCE_TYPE_COLUMN_NAME = "RESOURCE_TYPE"; - public static final String OPEN_BY_DEFAULT_COLUMN_NAME = "OPEN_BY_DEFAULT"; - public static final String PRIORITY_COLUMN_NAME = "PRIORITY"; - public static final int MISSING_COLUMN_INDEX = -1; - private int numResourceDefinitionsAdded = 0; - - private static Properties properties; - - private File resourceDataFile; - private CancerStudy cancerStudy; - private boolean relaxed; - - public void setFile(CancerStudy cancerStudy, File resourceDataFile, boolean relaxed) { - this.cancerStudy = cancerStudy; - this.resourceDataFile = resourceDataFile; - this.relaxed = relaxed; - } - - public void importData() throws Exception { - // if bulkLoading is ever turned off, - // code has to be added to check whether - // a resource data update should be - // perform instead of an insert - MySQLbulkLoader.bulkLoadOn(); - - if (relaxed) { - MySQLbulkLoader.relaxedModeOn(); - } - - FileReader reader = new FileReader(resourceDataFile); - BufferedReader buff = new BufferedReader(reader); - - String line = buff.readLine(); - String[] headerNames = splitFields(line); - Map headerIndexMap = makeHeaderIndexMap(headerNames); - - // validate columns and get index - int resourceIdIndex = findAndValidateResourceIdColumn(headerIndexMap); - int displayNameIndex = findAndValidateDisplayNameColumn(headerIndexMap); - int descriptionIndex = findAndValidateDescriptionColumn(headerIndexMap); - int resourceTypeIndex = findAndValidateResourceTypeColumn(headerIndexMap); - int openByDefaultIndex = findAndValidateOpenByDefaultColumn(headerIndexMap); - int priorityIndex = findAndValidatePriorityColumn(headerIndexMap); - - while ((line = buff.readLine()) != null) { - if (skipLine(line.trim())) { - continue; - } - - String[] fieldValues = getFieldValues(line, headerIndexMap); - - // set default value - String resourceId = ""; - String displayName = ""; - String description = ""; - ResourceType resourceType = null; - Boolean openByDefault = false; - int priority = 1; - // get resource definitions from columns - // get resourceId - if (isValueNotMissing(fieldValues[resourceIdIndex].toUpperCase())) { - resourceId = fieldValues[resourceIdIndex].toUpperCase(); - } else { - throw new RuntimeException( - "Please provide a valid resource id"); - } - // get displayName - if (isValueNotMissing(fieldValues[displayNameIndex])) { - displayName = fieldValues[displayNameIndex]; - } - else { - throw new RuntimeException( - "Please provide a valid display name"); - } - // get description (optional) - if (descriptionIndex != MISSING_COLUMN_INDEX && isValueNotMissing(fieldValues[descriptionIndex])) { - description = fieldValues[descriptionIndex]; - } - // get resourceType (must be value of ResourceTypes) - if (isValidResourceType(fieldValues[resourceTypeIndex])) { - resourceType = ResourceType.valueOf(fieldValues[resourceTypeIndex]); - } - // get openByDefault (optional) - if (openByDefaultIndex != MISSING_COLUMN_INDEX && isValidOpenByDefault(fieldValues[openByDefaultIndex])) { - openByDefault = Boolean.parseBoolean(fieldValues[openByDefaultIndex]); - } - // get priority (optional) - if (priorityIndex != MISSING_COLUMN_INDEX) { - try { - priority = Integer.parseInt(fieldValues[priorityIndex]); - } catch (NumberFormatException ex) { - throw new DaoException( - "priority cannot be parsed as an integer, all priority should be an integer."); - } - } - - // add resource definitions into database - ResourceDefinition resource = new ResourceDefinition(resourceId, displayName, - description, resourceType, openByDefault, - priority, cancerStudy.getInternalId()); - - ResourceDefinition resourceInDb = DaoResourceDefinition.getDatum(resource.getResourceId(), - cancerStudy.getInternalId()); - if (resourceInDb != null) { - ProgressMonitor.logWarning("Resource " + resourceInDb.getResourceId() + " found twice in your study!"); - continue; - } - if (DaoResourceDefinition.addDatum(resource) > 0) { - numResourceDefinitionsAdded++; - } - } - buff.close(); - - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - MySQLbulkLoader.relaxedModeOff(); - } - } - - private String[] splitFields(String line) throws IOException { - return line.split(DELIMITER, -1); - } - - private boolean skipLine(String line) { - return line.isEmpty(); - } - - /** - * Takes in the given line and returns the list of field values by splitting the - * line on DELIMITER. - * - * @param line - * @param headerIndexMap - * @return the list of values, one for each column. Value will be "" for empty - * columns. - */ - private String[] getFieldValues(String line, Map headerIndexMap) { - // split on delimiter: - String[] fieldValues = line.split(DELIMITER, -1); - - // validate: if number of fields is incorrect, give exception - if (fieldValues.length != headerIndexMap.size()) { - throw new IllegalArgumentException("Number of columns in line is not as expected. Expected: " - + headerIndexMap.size() + " columns, found: " + fieldValues.length + ", for line: " + line); - } - - // now iterate over lines and trim each value: - for (int i = 0; i < fieldValues.length; i++) { - fieldValues[i] = fieldValues[i].trim(); - } - return fieldValues; - } - - private Boolean isValueNotMissing(String value) { - return !MissingValues.has(value); - } - - private Boolean isValidResourceType(String value) { - try { - ResourceType.valueOf(value); - } catch (IllegalArgumentException ex) { - throw new IllegalArgumentException("Resource_Type should be one of the following : 'SAMPLE', 'PATIENT' or 'STUDY'." - + "found: " + value); - } - return true; - } - - private Boolean isValidOpenByDefault(String value) { - if (value.equalsIgnoreCase("true") || value.equalsIgnoreCase("false")) { - return true; - } - // open by default value not valid, will set as false by default - ProgressMonitor.logWarning("OpenByDefault value is not true or false, set to false by default."); - return false; - } - - private Map makeHeaderIndexMap(String[] headerNames) { - Map headerIndexMap = new HashMap(); - for (int i= 0; i < headerNames.length; i++) { - headerIndexMap.put(headerNames[i], i); - } - return headerIndexMap; - } - - private int findAndValidateResourceIdColumn(Map headerIndexMap) { - return findAndValidateColumnIndexInHeaders(RESOURCE_ID_COLUMN_NAME, headerIndexMap); - } - - private int findAndValidateDisplayNameColumn(Map headerIndexMap) { - return findAndValidateColumnIndexInHeaders(DISPLAY_NAME_COLUMN_NAME, headerIndexMap); - } - - private int findAndValidateDescriptionColumn(Map headerIndexMap) { - return findAndValidateOptionalColumnIndexInHeaders(DESCRIPTION_COLUMN_NAME, headerIndexMap); - } - - private int findAndValidateResourceTypeColumn(Map headerIndexMap) { - return findAndValidateColumnIndexInHeaders(RESOURCE_TYPE_COLUMN_NAME, headerIndexMap); - } - - private int findAndValidateOpenByDefaultColumn(Map headerIndexMap) { - return findAndValidateOptionalColumnIndexInHeaders(OPEN_BY_DEFAULT_COLUMN_NAME, headerIndexMap); - } - - private int findAndValidatePriorityColumn(Map headerIndexMap) { - return findAndValidateOptionalColumnIndexInHeaders(PRIORITY_COLUMN_NAME, headerIndexMap); - } - - private int findAndValidateColumnIndexInHeaders(String columnHeader, Map headerIndexMap) { - if (headerIndexMap.containsKey(columnHeader)) { - return headerIndexMap.get(columnHeader); - } - throw new RuntimeException("Aborting owing to failure to find " + columnHeader + - " in file. Please check your file format and try again."); - } - - private int findAndValidateOptionalColumnIndexInHeaders(String columnHeader, Map headerIndexMap) { - return headerIndexMap.getOrDefault(columnHeader, MISSING_COLUMN_INDEX); - } - - public int getNumResourceDefinitionsAdded() { - return numResourceDefinitionsAdded; - } - - /** - * Imports resource definition data (from the worksheet) - */ - public void run() { - try { - String progName = "importResourceDefinition"; - String description = "Import resource definition file"; - // usage: --data --meta --loadMode - // [directLoad|bulkLoad (default)] [--noprogress] - - OptionParser parser = new OptionParser(); - OptionSpec data = parser.accepts("data", "profile data file").withRequiredArg() - .describedAs("data_file.txt").ofType(String.class); - OptionSpec meta = parser.accepts("meta", "meta (description) file").withOptionalArg() - .describedAs("meta_file.txt").ofType(String.class); - OptionSpec study = parser.accepts("study", "cancer study id").withOptionalArg().describedAs("study") - .ofType(String.class); - OptionSpec relaxedFlag = parser.accepts("r", - "(not recommended) Flag for relaxed mode, determining how to handle detected data harmonization problems in the same study") - .withOptionalArg().describedAs("r").ofType(String.class); - parser.accepts("loadMode", "direct (per record) or bulk load of data").withOptionalArg() - .describedAs("[directLoad|bulkLoad (default)]").ofType(String.class); - parser.accepts("noprogress", - "this option can be given to avoid the messages regarding memory usage and % complete"); - - OptionSet options = null; - try { - options = parser.parse(args); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, e.getMessage()); - } - File resourceFile = null; - if (options.has(data)) { - resourceFile = new File(options.valueOf(data)); - } else { - throw new UsageException(progName, description, parser, "'data' argument required."); - } - boolean relaxed = false; - String cancerStudyStableId = null; - if (options.has(study)) { - cancerStudyStableId = options.valueOf(study); - } - if (options.has(meta)) { - properties = new TrimmedProperties(); - properties.load(new FileInputStream(options.valueOf(meta))); - cancerStudyStableId = properties.getProperty("cancer_study_identifier"); - } - if (options.has(relaxedFlag)) { - relaxed = true; - - } - SpringUtil.initDataSource(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId); - if (cancerStudy == null) { - throw new IllegalArgumentException("Unknown cancer study: " + cancerStudyStableId); - } - ProgressMonitor.setCurrentMessage("Reading data from: " + resourceFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(resourceFile); - ProgressMonitor.setCurrentMessage(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - - setFile(cancerStudy, resourceFile, relaxed); - importData(); - - // log import information - ProgressMonitor.setCurrentMessage( - "Total number of resource definitions added: " + getNumResourceDefinitionsAdded()); - if (getNumResourceDefinitionsAdded() == 0) { - throw new RuntimeException( - "No resource definition was added. " + "Please check your file format and try again."); - } - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportResourceDefinition(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportResourceDefinition(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportSampleList.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportSampleList.java deleted file mode 100644 index 411de87fe0f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportSampleList.java +++ /dev/null @@ -1,196 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; - -import java.io.*; -import java.util.*; - -/** - * Command Line tool to Import Sample Lists. - */ -public class ImportSampleList extends ConsoleRunnable { - - public static void importSampleList(File dataFile) throws IOException, DaoException { - ProgressMonitor.setCurrentMessage("Read data from: " + dataFile.getAbsolutePath()); - Properties properties = new TrimmedProperties(); - properties.load(new FileInputStream(dataFile)); - - String stableId = properties.getProperty("stable_id"); - - if (stableId.contains(" ")) { - throw new IllegalArgumentException("stable_id cannot contain spaces: " + stableId); - } - - if (stableId == null || stableId.length() == 0) { - throw new IllegalArgumentException("stable_id is not specified."); - } - - String cancerStudyIdentifier = properties.getProperty("cancer_study_identifier"); - if (cancerStudyIdentifier == null) { - throw new IllegalArgumentException("cancer_study_identifier is not specified."); - } - SpringUtil.initDataSource(); - CancerStudy theCancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - if (theCancerStudy == null) { - throw new IllegalArgumentException("cancer study identified by cancer_study_identifier '" - + cancerStudyIdentifier + "' not found in dbms or inaccessible to user."); - } - - String sampleListName = properties.getProperty("case_list_name"); - - String sampleListCategoryStr = properties.getProperty("case_list_category"); - if (sampleListCategoryStr == null || sampleListCategoryStr.length() == 0) { - sampleListCategoryStr = "other"; - } - SampleListCategory sampleListCategory = SampleListCategory.get(sampleListCategoryStr); - - String sampleListDescription = properties.getProperty("case_list_description"); - String sampleListStr = properties.getProperty("case_list_ids"); - if (sampleListName == null) { - throw new IllegalArgumentException("case_list_name is not specified."); - } else if (sampleListDescription == null) { - throw new IllegalArgumentException("case_list_description is not specified."); - } - - boolean itemsAddedViaPatientLink = false; - // construct sample id list - ArrayList sampleIDsList = new ArrayList(); - String[] sampleIds = sampleListStr.split("\t"); - for (String sampleId : sampleIds) { - sampleId = StableIdUtil.getSampleId(sampleId); - Sample s = DaoSample.getSampleByCancerStudyAndSampleId(theCancerStudy.getInternalId(), sampleId); - if (s==null) { - String warningMessage = "Error: could not find sample "+sampleId; - Patient p = DaoPatient.getPatientByCancerStudyAndPatientId(theCancerStudy.getInternalId(), sampleId); - if (p!=null) { - warningMessage += ". But found a patient with this ID. Will use its samples in the sample list."; - List samples = DaoSample.getSamplesByPatientId(p.getInternalId()); - for (Sample sa : samples) { - if (!sampleIDsList.contains(sa.getStableId())) { - sampleIDsList.add(sa.getStableId()); - itemsAddedViaPatientLink = true; - } - } - } - ProgressMonitor.logWarning(warningMessage); - } else if (!sampleIDsList.contains(s.getStableId())) { - sampleIDsList.add(s.getStableId()); - } else { - ProgressMonitor.logWarning("Warning: duplicated sample ID "+s.getStableId()+" in case list "+stableId); - } - } - - DaoSampleList daoSampleList = new DaoSampleList(); - SampleList sampleList = daoSampleList.getSampleListByStableId(stableId); - if (sampleList != null) { - throw new IllegalArgumentException("Patient list with this stable Id already exists: " + stableId); - } - - sampleList = new SampleList(); - sampleList.setStableId(stableId); - int cancerStudyId = theCancerStudy.getInternalId(); - sampleList.setCancerStudyId(cancerStudyId); - sampleList.setSampleListCategory(sampleListCategory); - sampleList.setName(sampleListName); - sampleList.setDescription(sampleListDescription); - sampleList.setSampleList(sampleIDsList); - daoSampleList.addSampleList(sampleList); - - sampleList = daoSampleList.getSampleListByStableId(stableId); - - ProgressMonitor.setCurrentMessage(" --> stable ID: " + sampleList.getStableId()); - ProgressMonitor.setCurrentMessage(" --> sample list name: " + sampleList.getName()); - ProgressMonitor.setCurrentMessage(" --> number of samples in file: " + sampleIds.length); - String warningSamplesViaPatientLink = (itemsAddedViaPatientLink? "(nb: can be higher if samples were added via patient link)" : ""); - ProgressMonitor.setCurrentMessage(" --> number of samples stored in final sample list " + warningSamplesViaPatientLink + ": " + sampleIDsList.size()); - } - - public void run () { - try { - // check args - if (args.length < 1) { - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - throw new UsageException( - "importCaseListData.pl ", - null, - ""); - } - File dataFile = new File(args[0]); - if (dataFile.isDirectory()) { - File files[] = dataFile.listFiles(); - for (File file : files) { - if (!file.getName().startsWith(".") && !file.getName().endsWith("~")) { - ImportSampleList.importSampleList(file); - } - } - if (files.length == 0) { - ProgressMonitor.logWarning("No patient lists found in directory, skipping import: " + dataFile.getCanonicalPath()); - } - } else { - if (!dataFile.getName().startsWith(".") && !dataFile.getName().endsWith("~")) { - ImportSampleList.importSampleList(dataFile); - } - else { - ProgressMonitor.logWarning("File name starts with '.' or ends with '~', so it was skipped: " + dataFile.getCanonicalPath()); - } - } - } catch (RuntimeException e) { - throw e; - } catch (IOException|DaoException e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportSampleList(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportSampleList(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportSif.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportSif.java deleted file mode 100644 index 75589416dfa..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportSif.java +++ /dev/null @@ -1,174 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.io.*; -import java.util.*; - -/** - * Command Line to Import SIF Interactions. - * - * @author Ethan Cerami. - */ -public class ImportSif { - private File sifFile; - private String dataSource; - - /** - * Constructor. - * - * @param sifFile SIF File. - * @param dataSource data source, e.g. "REACTOME" - */ - public ImportSif(File sifFile, String dataSource) { - this.sifFile = sifFile; - this.dataSource = dataSource; - } - - /** - * Imports the Interaction Data. - * @throws IOException IO Error. - * @throws DaoException Database Error. - */ - public void importData() throws IOException, DaoException { - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - int numInteractionsSaved = 0; - int numInteractionsNotSaved = 0; - int numRedundantInteractionsSkipped = 0; - Set interactionSet = new HashSet(); - - MySQLbulkLoader.bulkLoadOn(); - FileReader reader = new FileReader(sifFile); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); - while (line != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#")) { - String parts[] = line.split("\t"); - - String geneAId = parts[0]; - String interactionType = parts[1]; - String geneBId = parts[2]; - - CanonicalGene geneA = daoGeneOptimized.getNonAmbiguousGene(geneAId, true); - CanonicalGene geneB = daoGeneOptimized.getNonAmbiguousGene(geneBId, true); - - // Log genes that we cannot identify. - if (geneA == null) { - ProgressMonitor.logWarning("Cannot identify gene: " + geneAId); - } - if (geneB == null) { - ProgressMonitor.logWarning("Cannot identify gene: " + geneBId); - } - - if (geneA != null && geneB != null) { - - String key = createKey(geneA, geneB, interactionType); - if (!interactionSet.contains(key)) { - // SIF Interactions do not have experiment details or PMIDs. So, we set to null. - numInteractionsNotSaved++; - interactionSet.add(key); - } else { - numRedundantInteractionsSkipped++; - } - } else { - numInteractionsNotSaved++; - } - - } - line = buf.readLine(); - } - - // Flush database - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - ProgressMonitor.setCurrentMessage("Total number of interactions saved: " + numInteractionsSaved); - ProgressMonitor.setCurrentMessage("Total number of interactions not saved, due to " + - "invalid gene IDs: " + numInteractionsNotSaved); - ProgressMonitor.setCurrentMessage("Total number of redundant interactions skipped: " - + numRedundantInteractionsSkipped); - } - - /** - * Creates an Interacton Key. - * @param geneA Gene A. - * @param geneB Gene B. - * @param interactionType Interaction Type. - * @return key. - */ - private String createKey (CanonicalGene geneA, CanonicalGene geneB, - String interactionType) { - long idA = geneA.getEntrezGeneId(); - long idB = geneB.getEntrezGeneId(); - return new String(idA + ":" + interactionType + ":" + idB); - } - - - /** - * Command Line Util. - * @param args Command Line Arguments. - */ - public static void main(String[] args) { - if (args.length < 2) { - System.out.println("command line usage: importSif.pl "); - return; - } - ProgressMonitor.setConsoleMode(true); - - SpringUtil.initDataSource(); - - try { - File geneFile = new File(args[0]); - String dataSource = args[1]; - System.out.println("Reading interactions from: " + geneFile.getAbsolutePath()); - int numLines = FileUtil.getNumLines(geneFile); - System.out.println(" --> total number of lines: " + numLines); - ProgressMonitor.setMaxValue(numLines); - ImportSif parser = new ImportSif(geneFile, dataSource); - parser.importData(); - } catch (IOException e) { - e.printStackTrace(); - } catch (DaoException e) { - e.printStackTrace(); - } finally { - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportStructuralVariantData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportStructuralVariantData.java deleted file mode 100644 index 50ebd329844..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportStructuralVariantData.java +++ /dev/null @@ -1,229 +0,0 @@ -/* - * Copyright (c) 2018 - 2022 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.maf.TabDelimitedFileUtil; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.model.StructuralVariant; -import org.mskcc.cbio.portal.util.*; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashSet; -import java.util.Set; - -/** - * Imports a structural variant file. - * @author Sander Tan - */ - -public class ImportStructuralVariantData { - - // Initialize variables - private File structuralVariantFile; - private int geneticProfileId; - private String genePanel; - private Set namespaces; - private Set sampleSet = new HashSet<>(); - - public ImportStructuralVariantData( - File structuralVariantFile, - int geneticProfileId, - String genePanel, - Set namespaces - ) throws DaoException { - this.structuralVariantFile = structuralVariantFile; - this.geneticProfileId = geneticProfileId; - this.genePanel = genePanel; - this.namespaces = namespaces; - } - - public void importData() throws IOException, DaoException { - - FileReader reader = new FileReader(this.structuralVariantFile); - BufferedReader buf = new BufferedReader(reader); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - String line = buf.readLine(); - StructuralVariantUtil structuralVariantUtil = new StructuralVariantUtil(line, namespaces); - - int recordCount = 0; - // Genetic profile is read in first - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - ArrayList orderedSampleList = new ArrayList(); - long id = DaoStructuralVariant.getLargestInternalId(); - Set uniqueSVs = new HashSet<>(); - while ((line = buf.readLine()) != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if( !line.startsWith("#") && line.trim().length() > 0) { - recordCount++; - String parts[] = line.split("\t", -1); - StructuralVariant structuralVariant = structuralVariantUtil.parseStructuralVariantRecord(parts); - structuralVariant.setInternalId(++id); - structuralVariant.setGeneticProfileId(geneticProfileId); - if (!structuralVariantUtil.hasRequiredStructuralVariantFields(structuralVariant)) { - ProgressMonitor.logWarning( - "Data requirements not satisfied for SV record #" + recordCount + - " : sampleId was '" + structuralVariant.getSampleId() + "' (required)." + - " And at least one involved gene must be identified by entrez_id or hugo symbol: " + - " site1 geneId : '" + structuralVariant.getSite1EntrezGeneId() + "'" + - " site1 hugoSymbol : '" + structuralVariant.getSite1EntrezGeneId() + "'" + - " site2 geneId : '" + structuralVariant.getSite2EntrezGeneId() + "'" + - " site2 hugoSymbol : '" + structuralVariant.getSite2EntrezGeneId() + "'"); - continue; - } - - // get sample - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId( - geneticProfile.getCancerStudyId(), - StableIdUtil.getSampleId(structuralVariant.getSampleId())); - - // check sample existence - if (sample == null) { - ProgressMonitor.logWarning("Sample not found: " + structuralVariant.getSampleId() + ". Ignoring it."); - } else { - // Set sample internal id - structuralVariant.setSampleIdInternal(sample.getInternalId()); - - // The current structural variant model, the input file always contains 2 genes, so in this implementation both are required. - - // Assume we are dealing with Entrez Gene Ids - String site1HugoSymbol = structuralVariant.getSite1HugoSymbol(); - String site2HugoSymbol = structuralVariant.getSite2HugoSymbol(); - long site1EntrezGeneId = structuralVariant.getSite1EntrezGeneId(); - long site2EntrezGeneId = structuralVariant.getSite2EntrezGeneId(); - - CanonicalGene site1CanonicalGene = setCanonicalGene(site1EntrezGeneId, site1HugoSymbol, daoGene); - CanonicalGene site2CanonicalGene = setCanonicalGene(site2EntrezGeneId, site2HugoSymbol, daoGene); - - // Check for an invalid entrez gene id and make it null (but keep processing record) - if (site1EntrezGeneId != TabDelimitedFileUtil.NA_LONG && site1CanonicalGene == null) { - ProgressMonitor.logWarning("Could not find entrez gene id for gene 1: [" + site1EntrezGeneId - + "]. If we found gene 2, this record will still be loaded but without gene 1."); - site1EntrezGeneId = TabDelimitedFileUtil.NA_LONG; - } - if (site2EntrezGeneId != TabDelimitedFileUtil.NA_LONG && site2CanonicalGene == null) { - ProgressMonitor.logWarning("Could not find entrez gene id for gene 2: [" + site2EntrezGeneId - + "]. If we found gene 1, this record will still be loaded but without gene 2."); - site2EntrezGeneId = TabDelimitedFileUtil.NA_LONG; - } - - // If neither of the genes is recognized, skip the line - if(site1CanonicalGene == null && site2CanonicalGene == null) { - ProgressMonitor.logWarning("Could not find gene 1: " + site1HugoSymbol + " [" + site1EntrezGeneId - + "] or gene 2: " + site2HugoSymbol + " [" - + site2EntrezGeneId + "]. Ignoring it " - + "and all SV data associated with it!"); - // If at least one gene is recognized, continue - } else { - // Save the Entrez Gene Id if it was not saved before - if (site1EntrezGeneId == TabDelimitedFileUtil.NA_LONG || site1EntrezGeneId != site1CanonicalGene.getEntrezGeneId()) { - if (site1CanonicalGene != null) { - structuralVariant.setSite1EntrezGeneId(site1CanonicalGene.getEntrezGeneId()); - } else { - structuralVariant.setSite1EntrezGeneId(null); // we want this to be null in the database, not NA_LONG - } - } - if (site2EntrezGeneId == TabDelimitedFileUtil.NA_LONG || site2EntrezGeneId != site2CanonicalGene.getEntrezGeneId()) { - if (site2CanonicalGene != null) { - structuralVariant.setSite2EntrezGeneId(site2CanonicalGene.getEntrezGeneId()); - } else { - structuralVariant.setSite2EntrezGeneId(null); // we want this to be null in the database, not NA_LONG - } - } - - // check this is unique within the file - String key = getSVKey(structuralVariant); - if (!uniqueSVs.add(key)) { // we have already seen this SV in this file - ProgressMonitor.logWarning("Structural variant with sample id: " + structuralVariant.getSampleId() + ", site 1 Entrez gene id: " - + structuralVariant.getSite1EntrezGeneId() + ", site 1 chromosome: " + structuralVariant.getSite1Chromosome() - + ", site 1 position: " + structuralVariant.getSite1Position() + ", site 1 region number: " - + structuralVariant.getSite1RegionNumber() + ", site 1 Ensembl transcript id: " + structuralVariant.getSite1EnsemblTranscriptId() - + ", site 2 Entrez gene id: " - + structuralVariant.getSite2EntrezGeneId() + ", site 2 chromosome: " + structuralVariant.getSite2Chromosome() - + ", site 2 position: " + structuralVariant.getSite2Position() + ", site 2 region number: " - + structuralVariant.getSite2RegionNumber() + ", site 2 Ensembl transcript id: " + structuralVariant.getSite2EnsemblTranscriptId()); - continue; - } - - // Add structural variant - DaoStructuralVariant.addStructuralVariantToBulkLoader(structuralVariant); - - // Add sample to sample profile list, which is important for gene panels - if (!DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId) && !sampleSet.contains(sample.getStableId())) { - if (genePanel != null) { - DaoSampleProfile.addSampleProfile(sample.getInternalId(), geneticProfileId, GeneticProfileUtil.getGenePanelId(genePanel)); - } else { - DaoSampleProfile.addSampleProfile(sample.getInternalId(), geneticProfileId, null); - } - } - sampleSet.add(sample.getStableId()); - orderedSampleList.add(sample.getInternalId()); - } - } - } - } - DaoGeneticProfileSamples.addGeneticProfileSamples(geneticProfileId, orderedSampleList); - - buf.close(); - MySQLbulkLoader.flushAll(); - } - - private CanonicalGene setCanonicalGene(long siteEntrezGeneId, String siteHugoSymbol, DaoGeneOptimized daoGene) { - CanonicalGene siteCanonicalGene = null; - - // If the Entrez Gene Id is not "NA" set the canonical gene. - if (siteEntrezGeneId != TabDelimitedFileUtil.NA_LONG) { - siteCanonicalGene = daoGene.getGene(siteEntrezGeneId); - } - - // If no gene can be found based on Entrez Gene ID, try Symbol. - if (siteCanonicalGene == null && !TabDelimitedFileUtil.NA_STRING.equals(siteHugoSymbol)) { - siteCanonicalGene = daoGene.getNonAmbiguousGene(siteHugoSymbol, true); - } - - return siteCanonicalGene; - } - - private String getSVKey(StructuralVariant sv) { - StringBuffer sb = new StringBuffer(sv.getSampleId()); - sb.append(sv.getSite1EntrezGeneId()); - sb.append(sv.getSite1Chromosome()); - sb.append(sv.getSite1Position()); - sb.append(sv.getSite1RegionNumber()); - sb.append(sv.getSite1EnsemblTranscriptId()); - sb.append(sv.getSite2EntrezGeneId()); - sb.append(sv.getSite2Chromosome()); - sb.append(sv.getSite2Position()); - sb.append(sv.getSite2RegionNumber()); - sb.append(sv.getSite2EnsemblTranscriptId()); - sb.append(sv.getEventInfo()); - return sb.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTabDelimData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTabDelimData.java deleted file mode 100644 index b984abf4388..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTabDelimData.java +++ /dev/null @@ -1,1020 +0,0 @@ -/* - * Copyright (c) 2015 - 2019 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import java.util.stream.IntStream; -import java.util.stream.Stream; - -import org.apache.commons.lang3.ArrayUtils; -import org.cbioportal.model.EntityType; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; - - -/** - * Code to Import Copy Number Alteration, MRNA Expression Data, Methylation, or protein RPPA data - * - * @author Ethan Cerami - */ -public class ImportTabDelimData { - public static final String CNA_VALUE_AMPLIFICATION = "2"; - public static final String CNA_VALUE_GAIN = "1"; - public static final String CNA_VALUE_HEMIZYGOUS_DELETION = "-1"; - public static final String CNA_VALUE_HOMOZYGOUS_DELETION = "-2"; - public static final String CNA_VALUE_PARTIAL_DELETION = "-1.5"; - public static final String CNA_VALUE_ZERO = "0"; - private HashSet importedGeneticEntitySet = new HashSet<>(); - private File dataFile; - private String targetLine; - private int geneticProfileId; - private GeneticProfile geneticProfile; - private int entriesSkipped = 0; - private int nrExtraRecords = 0; - private Set arrayIdSet = new HashSet(); - private String genePanel; - private String genericEntityProperties; - private File pdAnnotationsFile; - private Map, Map> pdAnnotations; - private final GeneticAlterationImporter geneticAlterationImporter; - - /** - * Constructor. - * - * @param dataFile Data File containing Copy Number Alteration, MRNA Expression Data, or protein RPPA data - * @param targetLine The line we want to import. - * If null, all lines are imported. - * @param geneticProfileId GeneticProfile ID. - * @param genePanel GenePanel - * @param genericEntityProperties Generic Assay Entities. - * - * @deprecated : TODO shall we deprecate this feature (i.e. the targetLine)? - */ - public ImportTabDelimData( - File dataFile, - String targetLine, - int geneticProfileId, - String genePanel, - String genericEntityProperties, - DaoGeneticAlteration daoGeneticAlteration - ) { - this.dataFile = dataFile; - this.targetLine = targetLine; - this.geneticProfileId = geneticProfileId; - this.genePanel = genePanel; - this.genericEntityProperties = genericEntityProperties; - this.geneticAlterationImporter = new GeneticAlterationImporter( - geneticProfileId, - daoGeneticAlteration - ); - } - - /** - * Constructor. - * - * @param dataFile Data File containing Copy Number Alteration, MRNA Expression Data, or protein RPPA data - * @param targetLine The line we want to import. - * If null, all lines are imported. - * @param geneticProfileId GeneticProfile ID. - * - * @deprecated : TODO shall we deprecate this feature (i.e. the targetLine)? - */ - public ImportTabDelimData( - File dataFile, - String targetLine, - int geneticProfileId, - String genePanel, - DaoGeneticAlteration daoGeneticAlteration - ) { - this.dataFile = dataFile; - this.targetLine = targetLine; - this.geneticProfileId = geneticProfileId; - this.genePanel = genePanel; - this.geneticAlterationImporter = new GeneticAlterationImporter(geneticProfileId, daoGeneticAlteration); - } - - /** - * Constructor. - * - * @param dataFile Data File containing Copy Number Alteration, MRNA Expression Data, or protein RPPA data - * @param geneticProfileId GeneticProfile ID. - */ - public ImportTabDelimData( - File dataFile, - int geneticProfileId, - String genePanel, - DaoGeneticAlteration daoGeneticAlteration - ) { - this.dataFile = dataFile; - this.geneticProfileId = geneticProfileId; - this.genePanel = genePanel; - this.geneticAlterationImporter = new GeneticAlterationImporter(geneticProfileId, daoGeneticAlteration); - } - - /** - * Import the Copy Number Alteration, mRNA Expression, protein RPPA, GSVA or generic_assay data - * - * @throws IOException IO Error. - * @throws DaoException Database Error. - */ - public void importData(int numLines) throws IOException, DaoException { - - geneticProfile = DaoGeneticProfile.getGeneticProfileById(geneticProfileId); - - FileReader reader = new FileReader(dataFile); - BufferedReader buf = new BufferedReader(reader); - String headerLine = buf.readLine(); - String parts[] = headerLine.split("\t"); - - //Whether data regards CNA or RPPA: - boolean isDiscretizedCnaProfile = geneticProfile != null - && geneticProfile.getGeneticAlterationType() == GeneticAlterationType.COPY_NUMBER_ALTERATION - && geneticProfile.showProfileInAnalysisTab(); - boolean isRppaProfile = geneticProfile != null - && geneticProfile.getGeneticAlterationType() == GeneticAlterationType.PROTEIN_LEVEL - && "Composite.Element.Ref".equalsIgnoreCase(parts[0]); - boolean isGsvaProfile = geneticProfile != null - && geneticProfile.getGeneticAlterationType() == GeneticAlterationType.GENESET_SCORE - && parts[0].equalsIgnoreCase("geneset_id"); - boolean isGenericAssayProfile = geneticProfile != null - && geneticProfile.getGeneticAlterationType() == GeneticAlterationType.GENERIC_ASSAY - && parts[0].equalsIgnoreCase("ENTITY_STABLE_ID"); - - int numRecordsToAdd = 0; - int samplesSkipped = 0; - try { - int hugoSymbolIndex = getHugoSymbolIndex(parts); - int entrezGeneIdIndex = getEntrezGeneIdIndex(parts); - int rppaGeneRefIndex = getRppaGeneRefIndex(parts); - int genesetIdIndex = getGenesetIdIndex(parts); - int sampleStartIndex = getStartIndex(parts, hugoSymbolIndex, entrezGeneIdIndex, rppaGeneRefIndex, genesetIdIndex); - int genericAssayIdIndex = getGenericAssayIdIndex(parts); - if (isRppaProfile) { - if (rppaGeneRefIndex == -1) { - throw new RuntimeException("Error: the following column should be present for RPPA data: Composite.Element.Ref"); - } - } else if (isGsvaProfile) { - if (genesetIdIndex == -1) { - throw new RuntimeException("Error: the following column should be present for gene set score data: geneset_id"); - } - } else if (isGenericAssayProfile) { - if (genericAssayIdIndex == -1) { - throw new RuntimeException("Error: the following column should be present for this type of data: ENTITY_STABLE_ID"); - } - } else if (hugoSymbolIndex == -1 && entrezGeneIdIndex == -1) { - throw new RuntimeException("Error: at least one of the following columns should be present: Hugo_Symbol or Entrez_Gene_Id"); - } - - String sampleIds[]; - sampleIds = new String[parts.length - sampleStartIndex]; - System.arraycopy(parts, sampleStartIndex, sampleIds, 0, parts.length - sampleStartIndex); - - int nrUnknownSamplesAdded = 0; - ProgressMonitor.setCurrentMessage(" --> total number of samples: " + sampleIds.length); - - Map, Map> pdAnnotationsForStableSampleIds = null; - if (this.pdAnnotationsFile != null) { - pdAnnotationsForStableSampleIds = readPdAnnotations(this.pdAnnotationsFile); - } - // link Samples to the genetic profile - ArrayList orderedSampleList = new ArrayList(); - ArrayList filteredSampleIndices = new ArrayList(); - this.pdAnnotations = new HashMap<>(); - for (int i = 0; i < sampleIds.length; i++) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(geneticProfile.getCancerStudyId(), - StableIdUtil.getSampleId(sampleIds[i])); - // can be null in case of 'normal' sample, throw exception if not 'normal' and sample not found in db - if (sample == null) { - if (StableIdUtil.isNormal(sampleIds[i])) { - filteredSampleIndices.add(i); - samplesSkipped++; - continue; - } - else { - throw new RuntimeException("Unknown sample id '" + StableIdUtil.getSampleId(sampleIds[i]) + "' found in tab-delimited file: " + this.dataFile.getCanonicalPath()); - } - } - if (!DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)) { - Integer genePanelID = (genePanel == null) ? null : GeneticProfileUtil.getGenePanelId(genePanel); - DaoSampleProfile.addSampleProfile(sample.getInternalId(), geneticProfileId, genePanelID); - } - orderedSampleList.add(sample.getInternalId()); - if (pdAnnotationsForStableSampleIds != null) { - Set> keys = new HashSet<>(pdAnnotationsForStableSampleIds.keySet()); - for (Map.Entry stableSampleIdToGeneKey : keys) { - if (stableSampleIdToGeneKey.getKey().equals(sample.getStableId())) { - Long entrezGeneId = stableSampleIdToGeneKey.getValue(); - Map pdAnnotationsDetails = pdAnnotationsForStableSampleIds.get(stableSampleIdToGeneKey); - this.pdAnnotations.put(new AbstractMap.SimpleEntry<>(sample.getInternalId(), entrezGeneId), pdAnnotationsDetails); - pdAnnotationsForStableSampleIds.remove(stableSampleIdToGeneKey); - } - } - } - } - if (pdAnnotationsForStableSampleIds != null && !pdAnnotationsForStableSampleIds.keySet().isEmpty()) { - ProgressMonitor.logWarning("WARNING: Following pd annotation sample-entrezId pairs newer used in the data file: " + pdAnnotationsForStableSampleIds.keySet()); - } - if (nrUnknownSamplesAdded > 0) { - ProgressMonitor.logWarning("WARNING: Number of samples added on the fly because they were missing in clinical data: " + nrUnknownSamplesAdded); - } - if (samplesSkipped > 0) { - ProgressMonitor.setCurrentMessage(" --> total number of samples skipped (normal samples): " + samplesSkipped); - } - ProgressMonitor.setCurrentMessage(" --> total number of data lines: " + (numLines - 1)); - - DaoGeneticProfileSamples.addGeneticProfileSamples(geneticProfileId, orderedSampleList); - - //Gene cache: - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - //Object to insert records in the generic 'genetic_alteration' table: - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - - //cache for data found in cna_event' table: - Set existingCnaEvents = new HashSet<>(); - if (isDiscretizedCnaProfile) { - existingCnaEvents.addAll(DaoCnaEvent.getAllCnaEvents()); - MySQLbulkLoader.bulkLoadOn(); - } - - // load entities map from database - Map genericAssayStableIdToEntityIdMap = Collections.emptyMap(); - if (isGenericAssayProfile) { - genericAssayStableIdToEntityIdMap = GenericAssayMetaUtils.buildGenericAssayStableIdToEntityIdMap(); - } - - int lenParts = parts.length; - - String line = buf.readLine(); - while (line != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - boolean recordAdded = false; - - // either parse line as geneset or gene for importing into 'genetic_alteration' table - if (isGsvaProfile) { - recordAdded = parseGenesetLine(line, lenParts, sampleStartIndex, genesetIdIndex, - filteredSampleIndices, daoGeneticAlteration); - } else if (isGenericAssayProfile) { - recordAdded = parseGenericAssayLine(line, lenParts, sampleStartIndex, genericAssayIdIndex, - filteredSampleIndices, daoGeneticAlteration, genericAssayStableIdToEntityIdMap); - } else { - recordAdded = parseLine(line, lenParts, sampleStartIndex, - hugoSymbolIndex, entrezGeneIdIndex, rppaGeneRefIndex, - isRppaProfile, isDiscretizedCnaProfile, - daoGene, - filteredSampleIndices, orderedSampleList, - existingCnaEvents); - } - - // increment number of records added or entries skipped - if (recordAdded) { - numRecordsToAdd++; - } - else { - entriesSkipped++; - } - - line = buf.readLine(); - } - if (MySQLbulkLoader.isBulkLoad()) { - MySQLbulkLoader.flushAll(); - } - - if (isRppaProfile) { - ProgressMonitor.setCurrentMessage(" --> total number of extra records added because of multiple genes in one line: " + nrExtraRecords); - } - if (entriesSkipped > 0) { - ProgressMonitor.setCurrentMessage(" --> total number of data entries skipped (see table below): " + entriesSkipped); - } - - if (numRecordsToAdd == 0) { - throw new DaoException("Something has gone wrong! I did not save any records" + - " to the database!"); - } - } - finally { - buf.close(); - } - } - - private Map, Map> readPdAnnotations(File pdAnnotationsFile) { - Map, Map> pdAnnotations = new HashMap<>(); - BufferedReader reader; - try { - reader = new BufferedReader(new FileReader(pdAnnotationsFile)); - List header = Arrays.asList(reader.readLine().toLowerCase().split("\t")); - int sampleIdIndx = header.indexOf("sample_id"); - if (sampleIdIndx < 0) { - throw new RuntimeException("SAMPLE_ID column is not found in " + pdAnnotationsFile.getAbsolutePath()); - } - int entrezGeneIdIndx = header.indexOf("entrez_gene_id"); - if (entrezGeneIdIndx < 0) { - throw new RuntimeException("Entrez_Gene_Id column is not found in " + pdAnnotationsFile.getAbsolutePath()); - } - int driverFilterIndx = header.indexOf("cbp_driver"); - if (driverFilterIndx < 0) { - throw new RuntimeException("cbp_driver column is not found in " + pdAnnotationsFile.getAbsolutePath()); - } - int driverFilterAnnotationIndx = header.indexOf("cbp_driver_annotation"); - if (driverFilterAnnotationIndx < 0) { - throw new RuntimeException("cbp_driver_annotation column is not found in " + pdAnnotationsFile.getAbsolutePath()); - } - int driverTiersFilterIndx = header.indexOf("cbp_driver_tiers"); - if (driverTiersFilterIndx < 0) { - throw new RuntimeException("cbp_driver_tiers column is not found in " + pdAnnotationsFile.getAbsolutePath()); - } - int driverTiersFilterAnnotationIndx = header.indexOf("cbp_driver_tiers_annotation"); - if (driverTiersFilterAnnotationIndx < 0) { - throw new RuntimeException("cbp_driver_tiers_annotation column is not found in " + pdAnnotationsFile.getAbsolutePath()); - } - String line = reader.readLine(); - - while (line != null) { - String[] row = line.split("\t", -1); - if (row.length < 6) { - throw new RuntimeException("Mis-formatted row: " + String.join(", ", row)); - } - String stableSampleId = row[sampleIdIndx]; - Long entrezGeneId = Long.valueOf(row[entrezGeneIdIndx]); - Map.Entry sampleGeneKey = new AbstractMap.SimpleEntry<>(stableSampleId, entrezGeneId); - if (pdAnnotations.containsKey(sampleGeneKey)) { - throw new RuntimeException("There is more then one row with SAMPLE_ID=" + stableSampleId + " and Entrez_Gene_Id=" + entrezGeneId); - } - Map driverInfo = new HashMap<>(); - driverInfo.put("DRIVER_FILTER", row[driverFilterIndx]); - driverInfo.put("DRIVER_FILTER_ANNOTATION", row[driverFilterAnnotationIndx]); - driverInfo.put("DRIVER_TIERS_FILTER", row[driverTiersFilterIndx]); - driverInfo.put("DRIVER_TIERS_FILTER_ANNOTATION", row[driverTiersFilterAnnotationIndx]); - - pdAnnotations.put(sampleGeneKey, driverInfo); - line = reader.readLine(); - } - reader.close(); - } catch (IOException e) { - throw new RuntimeException("Can't read PD annotation file", e); - } - return pdAnnotations; - } - - /** - * Attempt to create a genetic_alteration record based on the current line read from a profile data file. - *

    - *
  1. Commented out lines and blank lines are always skipped (returns false) - *
  2. The line is split into columns by the tab delimiter - *
  3. The involved genes (list of entrez_gene_ids) are determined: - *
      - *
    1. Hugo_Symbol and Entrez_Gene_Id column indices are read and validated - *
    2. if neither are available, the line is skipped - *
    3. if Hugo_Symbol contains '///' or '---', the line is skipped - *
    4. rppaProfile parsing has special rules for determining the involved genes - *
    5. if Entrez_Gene_Id is available, use that to determine the involved genes - *
    6. if Hugo_Symbol is available, use that to determine the involved genes (truncate symbols with '|' in them) - *
    7. if the involved genes list is still empty, the line is skipped (returns false) - *
    - *
  4. Both gene_alias and gene records are examined to see how many genes of type 'miRNA' are matched - *
  5. If any matched record is of type 'miRNA': - *
      - *
    • Loop through each gene or gene_alias of type 'miRNA' and attempt to store the record under that gene in genetic_alteration - *
    • If no records were successfully stored in genetic_alteration, log the failure - *
    - *
  6. If no matched record is of type 'miRNA': - *
  7. if there is exactly 1 involved gene (using only the gene table if sufficient, or gene_alias if neccessary): - *
      - *
    1. if this is a 'discretizedCnaProfile', normalize the CNA values and create a list of cnaEvents to be added - *
    2. attempt to store the record in genetic_alteration - *
    3. if the record is successfully stored (not duplicated), create (or update) records in sample_cna_event for the created list of cnaEvents (if any) - *
    - *
  8. if there are several involved genes and the profile is an rppaProfile, loop through the genes; for each one: - *
      - *
    1. attempt to store the record under that gene in genetic_alteration - *
    2. count the number of successfully imported records (for logging) - *
    - *
      - *
    • after looping through all involved genes, check whether any records were successfully stored in genetic_alteration - if not log the failure - *
    - *
  9. if there are several involved genes and the profile is not an rppaProfile, log a failure to import the current line due to ambiguous gene symbol - *
- *
  • If a record was (or more than one were) successfully stored in genetic_alteration, return true ; else false - * - *

    - * During the import of any single profile data file, at most one record per Entrez_Gene_Id will be successfuly imported to genetic_alteration. - * Each attempt to import is done through a call to the function storeGeneticAlterations(). - * That function will check an instance variable importSetOfGenes, and if the gene has been previously imported, no new attempt is made (failure). - * Each time a gene is successfully imported, it is added to importSetOfGenes. - *

    - * MicroRNA are treated specially because of the possible presence of constructed combination forms (such as 'MIR-100/100*' and 'MIR-100/100'). - * In these cases a Hugo_Symbol such as 'hsa-mir-100' may be expected to match the (fake) Entrez_Gene_Id for both of these combination forms. - * In that case, we want to import several copies of the genetic alteration profile line .. one for each matched gene of type 'miRNA'. - * This allows the visualization of both CNA event profiles for the microRNA precursor with expression profiles for the microRNA mature form. - *

    - * The current implementation of this code does not attempt to "merge" / "unify" lines in the profile data file which have duplicated Entrez_Gene_Id. - * Instead, the first encountered line which maps to the Entrez_Gene_Id will be stored as a record in genetic_alteration (returns true). - * Later lines which attempt to store a record with that Entrez_Gene_Id will not be stored as a record in genetic_alteration (returns false). - * For microRNA gene aliases it is possible that complex interactions will occur, where an earlier line in the data file stores a record under several Entrez_Gene_Ids, and a later line in the file fails to store records under some of those previously 'used' Entrez_Gene_Ids, but succeeds in storing a record under one or more not previously used Entrez_Gene_Ids. So a microRNA line from the file may be imported "partially successfully" (returns true). - *

    - * Examples Cases:
    - * Gene records are P1, P2, P3, P4 (protein coding), M1, M2, M3 (microRNA). - * Gene_Symbol AMA is gene_alias for M1 and M2, Gene_Symbol AMB is gene_alias for M2 and M3, Gene_Symbol AAMBIG is gene_alias for P3 and P4. Gene_Symbol AMIXED is gene_alias for P1 and M3. - *

    - * Case_1 (the last two lines will be skipped and logged like "Gene P1 (#) found to be duplicated in your file. Duplicated row will be ignored!")
    - * - *
    Hugo_SymbolSample1... - *
    P10... - *
    P20... - *
    P10... - *
    P10... - *
    - *

    - * Case_2 (the last line will be skipped and logged like "Gene M1 (#) (given as alias in your file as: AMA) found to be duplicated in your file. Duplicated row will be ignored!" , "Gene M2 (#) (given as alias in your file as: AMA) found to be duplicated in your file. Duplicated row will be ignored!" , "Could not store microRNA or RPPA data" )
    - * - *
    Hugo_SymbolSample1... - *
    AMA0... - *
    AMA0... - *
    - *

    - * Case_3 (the last line in the file will fail with log messages like "Gene symbol AAMBIG found to be ambiguous. Record will be skipped for this gene.")
    - * - *
    Hugo_SymbolSample1... - *
    P10... - *
    P20... - *
    AAMBIG0... - *
    - *

    - * Case_4 (the second to last line will partially succeed, storing a record in genetic_alteration for gene M3 but failing for M2 with a log message like "Gene M2 (#) (given as alias in your file as: AMB) found to be duplicated in your file. Duplicated row will be ignored!" ; the last line in the file will fail with log messages like "Gene M3 (#) (given as alias in your file as: AMIXED) found to be duplicated in your file. Duplicated row will be ignored!" , "Gene symbol AMIXED found to be ambiguous (a mixture of microRNA and other types). Record will be skipped for this gene.")
    - * - *
    Hugo_SymbolSample1... - *
    AMA0... - *
    AMB0... - *
    AMIXED0... - *
    - * - * @param line the line from the profile data file to be parsed - * @param nrColumns the number of columns, defined by the header line - * @param sampleStartIndex the index of the first column with a sample name in the header field - * @param hugoSymbolIndex the index of the column Hugo_Symbol - * @param entrezGeneIdIndex the index of the column Entrez_Gene_Id - * @param rppaGeneRefIndex the index of the column Composite.Element.Ref - * @param isRppaProfile true if this is an rppa profile (i.e. alteration type is PROTEIN_LEVEL and the first column is Composite.Element.Ref) - * @param isDiscretizedCnaProfile true if this is a discretized CNA profile (i.e. alteration type COPY_NUMBER_ALTERATION and showProfileInAnalysisTab is true) - * @param daoGene an instance of DaoGeneOptimized ... for use in resolving gene symbols - * @param orderedSampleList a list of the internal sample ids corresponding to the sample names in the header line - * @param existingCnaEvents a collection of CnaEvents, to be added to or updated during parsing of individual lines - * @return true if any record was stored in genetic_alteration, else false - * @throws DaoException if any DaoException is thrown while using daoGene or daoGeneticAlteration - */ - private boolean parseLine(String line, int nrColumns, int sampleStartIndex, - int hugoSymbolIndex, int entrezGeneIdIndex, int rppaGeneRefIndex, - boolean isRppaProfile, boolean isDiscretizedCnaProfile, - DaoGeneOptimized daoGene, - List filteredSampleIndices, List orderedSampleList, - Set existingCnaEvents - ) throws DaoException { - - //TODO: refactor this entire function - split functionality into smaller units / subroutines - - boolean recordStored = false; - - // Ignore lines starting with # - if (!line.startsWith("#") && line.trim().length() > 0) { - String[] parts = line.split("\t", -1); - - if (parts.length > nrColumns) { - if (line.split("\t").length > nrColumns) { - ProgressMonitor.logWarning("Ignoring line with more fields (" + parts.length - + ") than specified in the headers(" + nrColumns + "): \n" + parts[0]); - return false; - } - } - String values[] = (String[]) ArrayUtils.subarray(parts, sampleStartIndex, parts.length > nrColumns ? nrColumns : parts.length); - values = filterOutNormalValues(filteredSampleIndices, values); - - String geneSymbol = null; - if (hugoSymbolIndex != -1) { - geneSymbol = parts[hugoSymbolIndex]; - } - //RPPA: //TODO - we should split up the RPPA scenario from this code...too many if/else because of this - if (rppaGeneRefIndex != -1) { - geneSymbol = parts[rppaGeneRefIndex]; - } - if (geneSymbol != null && geneSymbol.isEmpty()) { - geneSymbol = null; - } - if (isRppaProfile && geneSymbol == null) { - ProgressMonitor.logWarning("Ignoring line with no Composite.Element.REF value"); - return false; - } - //get entrez - String entrez = null; - if (entrezGeneIdIndex != -1) { - entrez = parts[entrezGeneIdIndex]; - } - if (entrez != null) { - if (entrez.isEmpty()) { - entrez = null; - } - else if (!entrez.matches("[0-9]+")) { - //TODO - would be better to give an exception in some cases, like negative Entrez values - ProgressMonitor.logWarning("Ignoring line with invalid Entrez_Id " + entrez); - return false; - } - } - - //If all are empty, skip line: - if (geneSymbol == null && entrez == null) { - ProgressMonitor.logWarning("Ignoring line with no Hugo_Symbol and no Entrez_Id"); - return false; - } else { - if (geneSymbol != null && (geneSymbol.contains("///") || geneSymbol.contains("---"))) { - // Ignore gene IDs separated by ///. This indicates that - // the line contains information regarding multiple genes, and - // we cannot currently handle this. - // Also, ignore gene IDs that are specified as ---. This indicates - // the line contains information regarding an unknown gene, and - // we cannot currently handle this. - ProgressMonitor.logWarning("Ignoring gene ID: " + geneSymbol); - return false; - } else { - List genes = null; - //If rppa, parse genes from "Composite.Element.REF" column: - if (isRppaProfile) { - genes = parseRPPAGenes(geneSymbol); - if (genes == null) { - //will be null when there is a parse error in this case, so we - //can return here and avoid duplicated messages: - return false; - } - if (genes.isEmpty()) { - String gene = (geneSymbol != null) ? geneSymbol : entrez; - ProgressMonitor.logWarning("Gene not found for: [" + gene - + "]. Ignoring it " - + "and all tab-delimited data associated with it!"); - return false; - } - } else { - //try entrez: - if (entrez != null) { - CanonicalGene gene = daoGene.getGene(Long.parseLong(entrez)); - if (gene != null) { - genes = Arrays.asList(gene); - } - } - //no entrez or could not resolve by entrez, try hugo: - if ((genes == null || genes.isEmpty()) && geneSymbol != null) { - // deal with multiple symbols separate by |, use the first one - int ix = geneSymbol.indexOf("|"); - if (ix > 0) { - geneSymbol = geneSymbol.substring(0, ix); - } - genes = daoGene.getGene(geneSymbol, true); - } - //if genes still null, skip current record - if (genes == null || genes.isEmpty()) { - ProgressMonitor.logWarning("Entrez_Id " + entrez + " not found. Record will be skipped for this gene."); - return false; - } - } - - // If targetLine is specified and does not match the current line, skip the current line. - if (targetLine != null && !(parts[0].equals(targetLine))) { - return false; - } - - List genesMatchingAnAlias = Collections.emptyList(); - if (geneSymbol != null) { - genesMatchingAnAlias = daoGene.getGenesForAlias(geneSymbol); - } - - Set microRNAGenes = new HashSet<>(); - Set nonMicroRNAGenes = new HashSet<>(); - Iterator geneIterator = Stream.concat(genes.stream(), genesMatchingAnAlias.stream()).iterator(); - while (geneIterator.hasNext()) { - CanonicalGene g = geneIterator.next(); - if ("miRNA".equals(g.getType())) { - microRNAGenes.add(g); - } else { - nonMicroRNAGenes.add(g); - } - } - if (!microRNAGenes.isEmpty()) { - // for micro rna, duplicate the data - for (CanonicalGene gene : microRNAGenes) { - if (this.geneticAlterationImporter.store(values, gene, geneSymbol)) { - recordStored = true; - } - } - if (!recordStored) { - if (nonMicroRNAGenes.isEmpty()) { - // this means that no microRNA records could not be stored - ProgressMonitor.logWarning("Could not store microRNA data"); - } else { - // this case : - // - at least one of the entrez-gene-ids was not a microRNA - // - all of the matched microRNA ids (if any) failed to be imported (presumably already imported on a prior line) - ProgressMonitor.logWarning("Gene symbol " + geneSymbol + " found to be ambiguous (a mixture of microRNA and other types). Record will be skipped for this gene."); - } - return false; - } - } else { - // none of the matched genes are type "miRNA" - if (genes.size() == 1) { - List cnaEventsToAdd = new ArrayList(); - - if (isDiscretizedCnaProfile) { - long entrezGeneId = genes.get(0).getEntrezGeneId(); - for (int i = 0; i < values.length; i++) { - - // temporary solution -- change partial deletion back to full deletion. - if (values[i].equals(CNA_VALUE_PARTIAL_DELETION)) { - values[i] = CNA_VALUE_HOMOZYGOUS_DELETION; - } - if (values[i].equals(CNA_VALUE_AMPLIFICATION) - // || values[i].equals(CNA_VALUE_GAIN) >> skipping GAIN, ZERO, HEMIZYGOUS_DELETION to minimize size of dataset in DB - // || values[i].equals(CNA_VALUE_ZERO) - // || values[i].equals(CNA_VALUE_HEMIZYGOUS_DELETION) - || values[i].equals(CNA_VALUE_HOMOZYGOUS_DELETION) - ) { - Integer sampleId = orderedSampleList.get(i); - CnaEvent cnaEvent = new CnaEvent(sampleId, geneticProfileId, entrezGeneId, Short.parseShort(values[i])); - //delayed add: - AbstractMap.SimpleEntry sampleGenePair = new AbstractMap.SimpleEntry<>(sampleId, entrezGeneId); - Map pdAnnotationDetails = this.pdAnnotations.get(sampleGenePair); - if (pdAnnotationDetails != null) { - cnaEvent.setDriverFilter(pdAnnotationDetails.get("DRIVER_FILTER")); - cnaEvent.setDriverFilterAnnotation(pdAnnotationDetails.get("DRIVER_FILTER_ANNOTATION")); - cnaEvent.setDriverTiersFilter(pdAnnotationDetails.get("DRIVER_TIERS_FILTER")); - cnaEvent.setDriverTiersFilterAnnotation(pdAnnotationDetails.get("DRIVER_TIERS_FILTER_ANNOTATION")); - } - cnaEventsToAdd.add(cnaEvent); - } - } - } - // Store all values per gene: - recordStored = this.geneticAlterationImporter.store(values, genes.get(0), geneSymbol); - //only add extra CNA related records if the step above worked, otherwise skip: - if (recordStored) { - CnaUtil.storeCnaEvents(existingCnaEvents, cnaEventsToAdd); - } - } else { - if (isRppaProfile) { // for protein data, duplicate the data - for (CanonicalGene gene : genes) { - if (this.geneticAlterationImporter.store(values, gene, geneSymbol)) { - recordStored = true; - nrExtraRecords++; - } - } - if (recordStored) { - //skip one, to avoid double counting: - nrExtraRecords--; - } else { - // this means that RPPA could not be stored - ProgressMonitor.logWarning("Could not store RPPA data"); - } - } else { - if (!recordStored) { - // this case : - // - the hugo gene symbol was ambiguous (matched multiple entrez-gene-ids) - ProgressMonitor.logWarning("Gene symbol " + geneSymbol + " found to be ambiguous. Record will be skipped for this gene."); - } - } - } - } - } - } - } - return recordStored; - } - - /** - * Parses line for gene set record and stores record in 'genetic_alteration' table. - * @param line - * @param nrColumns - * @param sampleStartIndex - * @param genesetIdIndex - * @param filteredSampleIndices - * @param daoGeneticAlteration - * @return - * @throws DaoException - */ - private boolean parseGenesetLine(String line, int nrColumns, int sampleStartIndex, int genesetIdIndex, - List filteredSampleIndices, DaoGeneticAlteration daoGeneticAlteration) throws DaoException { - boolean storedRecord = false; - - if (!line.startsWith("#") && line.trim().length() > 0) { - String[] parts = line.split("\t", -1); - - if (parts.length > nrColumns) { - if (line.split("\t").length > nrColumns) { - ProgressMonitor.logWarning("Ignoring line with more fields (" + parts.length - + ") than specified in the headers(" + nrColumns + "): \n" + parts[0]); - return false; - } - } - - String values[] = (String[]) ArrayUtils.subarray(parts, sampleStartIndex, parts.length > nrColumns ? nrColumns : parts.length); - - // trim whitespace from values - values = Stream.of(values).map(String::trim).toArray(String[]::new); - values = filterOutNormalValues(filteredSampleIndices, values); - - Geneset geneset = DaoGeneset.getGenesetByExternalId(parts[genesetIdIndex]); - if (geneset != null) { - storedRecord = storeGeneticEntityGeneticAlterations(values, daoGeneticAlteration, geneset.getGeneticEntityId(), - EntityType.GENESET, geneset.getExternalId()); - } - else { - ProgressMonitor.logWarning("Geneset " + parts[genesetIdIndex] + " not found in DB. Record will be skipped."); - } - } - return storedRecord; - } - - /** - * Parses line for generic assay profile record and stores record in 'genetic_alteration' table. - * @param line row from the separated-text that contains one or more values on a single sample - * @param nrColumns - * @param sampleStartIndex index of the first sample column - * @param genericAssayIdIndex index of the column that uniquely identifies a sample - * @param filteredSampleIndices - * @param daoGeneticAlteration - * @return - * @throws DaoException - */ - - private boolean parseGenericAssayLine(String line, int nrColumns, int sampleStartIndex, int genericAssayIdIndex, - List filteredSampleIndices, DaoGeneticAlteration daoGeneticAlteration, Map genericAssayStableIdToEntityIdMap) throws DaoException { - - boolean recordIsStored = false; - - if (!line.startsWith("#") && line.trim().length() > 0) { - String[] parts = line.split("\t", -1); - - if (parts.length > nrColumns) { - if (line.split("\t").length > nrColumns) { - ProgressMonitor.logWarning("Ignoring line with more fields (" + parts.length - + ") than specified in the headers(" + nrColumns + "): \n" + parts[0]); - return false; - } - } - - String values[] = (String[]) ArrayUtils.subarray(parts, sampleStartIndex, parts.length > nrColumns ? nrColumns : parts.length); - - // trim whitespace from values - values = Stream.of(values).map(String::trim).toArray(String[]::new); - values = filterOutNormalValues(filteredSampleIndices, values); - - String stableId = parts[genericAssayIdIndex]; - Integer entityId = genericAssayStableIdToEntityIdMap.getOrDefault(stableId, null); - - if (entityId == null) { - ProgressMonitor.logWarning("Generic Assay entity " + parts[genericAssayIdIndex] + " not found in DB. Record will be skipped."); - } else { - recordIsStored = storeGeneticEntityGeneticAlterations(values, daoGeneticAlteration, entityId, - EntityType.GENERIC_ASSAY, stableId); - } - - return recordIsStored; - } - - return recordIsStored; - } - - /** - * Stores genetic alteration data for a genetic entity. - * @param values - * @param daoGeneticAlteration - * @param geneticEntityId - internal id for genetic entity - * @param geneticEntityType - "GENE", "GENESET", "PHOSPHOPROTEIN" - * @param geneticEntityName - hugo symbol for "GENE", external id for "GENESET", phospho gene name for "PHOSPHOPROTEIN" - * @return boolean indicating if record was stored successfully or not - */ - private boolean storeGeneticEntityGeneticAlterations(String[] values, DaoGeneticAlteration daoGeneticAlteration, - Integer geneticEntityId, EntityType geneticEntityType, String geneticEntityName) { - try { - if (importedGeneticEntitySet.add(geneticEntityId)) { - daoGeneticAlteration.addGeneticAlterationsForGeneticEntity(geneticProfile.getGeneticProfileId(), geneticEntityId, values); - return true; - } - else { - ProgressMonitor.logWarning("Data for genetic entity " + geneticEntityName - + " [" + geneticEntityType + "] already imported from file. Record will be skipped."); - return false; - } - } - catch (Exception ex) { - throw new RuntimeException("Aborted: Error found for row starting with " + geneticEntityName + ": " + ex.getMessage()); - } - } - - /** - * Tries to parse the genes and look them up in DaoGeneOptimized - * - * @param antibodyWithGene - * @return returns null if something was wrong, e.g. could not parse the antibodyWithGene string; returns - * a list with 0 or more elements otherwise. - * @throws DaoException - */ - private List parseRPPAGenes(String antibodyWithGene) throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - String[] parts = antibodyWithGene.split("\\|"); - //validate: - if (parts.length < 2) { - ProgressMonitor.logWarning("Could not parse Composite.Element.Ref value " + antibodyWithGene + ". Record will be skipped."); - //return null when there was a parse error: - return null; - } - String[] symbols = parts[0].split(" "); - String arrayId = parts[1]; - //validate arrayId: if arrayId if duplicated, warn: - if (!arrayIdSet.add(arrayId)) { - ProgressMonitor.logWarning("Id " + arrayId + " in [" + antibodyWithGene + "] found to be duplicated. Record will be skipped."); - return null; - } - List symbolsNotFound = new ArrayList(); - List genes = new ArrayList(); - for (String symbol : symbols) { - if (symbol.equalsIgnoreCase("NA")) { - //workaround because of bug in firehose. See https://github.com/cBioPortal/cbioportal/issues/839#issuecomment-203523078 - ProgressMonitor.logWarning("Gene " + symbol + " will be interpreted as 'Not Available' in this case. Record will be skipped for this gene."); - } - else { - CanonicalGene gene = daoGene.getNonAmbiguousGene(symbol, true); - if (gene != null) { - genes.add(gene); - } - else { - symbolsNotFound.add(symbol); - } - } - } - if (genes.size() == 0) { - //return empty list: - return genes; - } - //So one or more genes were found, but maybe some were not found. If any - //is not found, report it here: - for (String symbol : symbolsNotFound) { - ProgressMonitor.logWarning("Gene " + symbol + " not found in DB. Record will be skipped for this gene."); - } - - Pattern p = Pattern.compile("(p[STY][0-9]+(?:_[STY][0-9]+)*)"); - Matcher m = p.matcher(arrayId); - String residue; - if (!m.find()) { - //type is "protein_level": - return genes; - } else { - //type is "phosphorylation": - residue = m.group(1); - return importPhosphoGene(genes, residue); - } - } - - private List importPhosphoGene(List genes, String residue) throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - List phosphoGenes = new ArrayList(); - for (CanonicalGene gene : genes) { - Set aliases = new HashSet(); - aliases.add("rppa-phospho"); - aliases.add("phosphoprotein"); - aliases.add("phospho" + gene.getStandardSymbol()); - String phosphoSymbol = gene.getStandardSymbol() + "_" + residue; - CanonicalGene phosphoGene = daoGene.getGene(phosphoSymbol); - if (phosphoGene == null) { - ProgressMonitor.logWarning("Phosphoprotein " + phosphoSymbol + " not yet known in DB. Adding it to `gene` table with 3 aliases in `gene_alias` table."); - phosphoGene = new CanonicalGene(phosphoSymbol, aliases); - phosphoGene.setType(CanonicalGene.PHOSPHOPROTEIN_TYPE); - daoGene.addGene(phosphoGene); - } - phosphoGenes.add(phosphoGene); - } - return phosphoGenes; - } - - - // returns index for geneset id column - private int getGenesetIdIndex(String[] headers) { - return getColIndexByName(headers, "geneset_id"); - } - - private int getGenericAssayIdIndex(String[] headers) { - return getColIndexByName(headers, "ENTITY_STABLE_ID"); - } - - private int getHugoSymbolIndex(String[] headers) { - return getColIndexByName(headers, "Hugo_Symbol"); - } - - private int getEntrezGeneIdIndex(String[] headers) { - return getColIndexByName(headers, "Entrez_Gene_Id"); - } - - private int getRppaGeneRefIndex(String[] headers) { - return getColIndexByName(headers, "Composite.Element.Ref"); - } - - // helper function for finding the index of a column by name - private int getColIndexByName(String[] headers, String colName) { - for (int i = 0; i < headers.length; i++) { - if (headers[i].equalsIgnoreCase(colName)) { - return i; - } - } - return -1; - } - - private int getStartIndex(String[] headers, int... featureColIds) { - - // get the feature column index with the highest value - Integer lastFeatureCol = IntStream.of(featureColIds).max().orElse(-1); - - // list the names of feature columns here - List featureColNames = new ArrayList(); - featureColNames.add("Gene Symbol"); - featureColNames.add("Hugo_Symbol"); - featureColNames.add("Entrez_Gene_Id"); - featureColNames.add("Locus ID"); - featureColNames.add("Cytoband"); - featureColNames.add("Composite.Element.Ref"); - featureColNames.add("geneset_id"); - featureColNames.add("entity_stable_id"); - featureColNames.add("ENTITY_STABLE_ID"); - - // add genericEntityProperties as the feature colum - if (genericEntityProperties != null && genericEntityProperties.trim().length() != 0) { - String[] propertyNames = genericEntityProperties.trim().split(","); - featureColNames.addAll(Arrays.asList(propertyNames)); - } - - int startIndex = -1; - - for (int i = 0; i < headers.length; i++) { - String h = headers[i]; - //if the column is not one of the gene symbol/gene id columns or other pre-sample columns: - // and the column is found after all non value columns that are passed in - if (featureColNames.stream().noneMatch(e -> e.equalsIgnoreCase(h)) - && i > lastFeatureCol) { - //then we consider this the start of the sample columns: - startIndex = i; - break; - } - } - if (startIndex == -1) - throw new RuntimeException("Could not find a sample column in the file"); - - return startIndex; - } - - private String[] filterOutNormalValues(List filteredSampleIndices, String[] values) - { - ArrayList filteredValues = new ArrayList(); - for (int lc = 0; lc < values.length; lc++) { - if (!filteredSampleIndices.contains(lc)) { - filteredValues.add(values[lc]); - } - } - return filteredValues.toArray(new String[filteredValues.size()]); - } - - public File getPdAnnotationsFile() { - return pdAnnotationsFile; - } - - public void setPdAnnotationsFile(File pdAnnotationsFile) { - this.pdAnnotationsFile = pdAnnotationsFile; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTimelineData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTimelineData.java deleted file mode 100644 index 0b5b182be47..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTimelineData.java +++ /dev/null @@ -1,158 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import joptsimple.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.mskcc.cbio.portal.util.SpringUtil; - -/** - * Imports timeline data for display in patient view - * - * @author jgao, inodb - */ -public class ImportTimelineData extends ConsoleRunnable { - - private static void importData(String dataFile, int cancerStudyId) throws IOException, DaoException { - MySQLbulkLoader.bulkLoadOn(); - SpringUtil.initDataSource(); - - ProgressMonitor.setCurrentMessage("Reading file " + dataFile); - FileReader reader = new FileReader(dataFile); - BufferedReader buff = new BufferedReader(reader); - try { - String line = buff.readLine(); - - // Check event category agnostic headers - String[] headers = line.split("\t"); - int indexCategorySpecificField = -1; - if (headers[0].equals("PATIENT_ID") && headers[1].equals("START_DATE")) { - if ("STOP_DATE".equals(headers[2]) && "EVENT_TYPE".equals(headers[3])) { - indexCategorySpecificField = 4; - } else if (headers[2].equals("EVENT_TYPE")) { - indexCategorySpecificField = 3; - } - } - if (indexCategorySpecificField == -1) { - throw new RuntimeException("The first line must start with\n'PATIENT_ID\tSTART_DATE\tEVENT_TYPE'\nor\n" - + "PATIENT_ID\tSTART_DATE\tSTOP_DATE\tEVENT_TYPE"); - } - - long clinicalEventId = DaoClinicalEvent.getLargestClinicalEventId(); - - while ((line = buff.readLine()) != null) { - line = line.trim(); - - String[] fields = line.split("\t"); - if (fields.length > headers.length) { - //TODO - should better throw an exception here... - ProgressMonitor.logWarning("more attributes than header: " + line + ". Skipping entry."); - continue; - } - String patientId = fields[0]; - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - if (patient == null) { - ProgressMonitor.logWarning("Patient " + patientId + " not found in study " + cancerStudyId + ". Skipping entry."); - continue; - } - ClinicalEvent event = new ClinicalEvent(); - event.setClinicalEventId(++clinicalEventId); - event.setPatientId(patient.getInternalId()); - event.setStartDate(Long.valueOf(fields[1])); - if (indexCategorySpecificField != 3 && !fields[2].isEmpty()) { - event.setStopDate(Long.valueOf(fields[2])); - } - event.setEventType(fields[indexCategorySpecificField - 1]); - Map eventData = new HashMap(); - for (int i = indexCategorySpecificField; i < fields.length; i++) { - if (!fields[i].isEmpty()) { - eventData.put(headers[i], fields[i]); - } - } - event.setEventData(eventData); - - DaoClinicalEvent.addClinicalEvent(event); - } - - MySQLbulkLoader.flushAll(); - } - finally { - buff.close(); - } - } - - public void run() { - try { - String description = "Import 'timeline' data"; - - OptionSet options = ConsoleUtil.parseStandardDataAndMetaOptions(args, description, true); - String dataFile = (String) options.valueOf("data"); - File descriptorFile = new File((String) options.valueOf("meta")); - - Properties properties = new TrimmedProperties(); - properties.load(new FileInputStream(descriptorFile)); - - int cancerStudyInternalId = ValidationUtils.getInternalStudyId(properties.getProperty("cancer_study_identifier")); - - importData(dataFile, cancerStudyInternalId); - } catch (RuntimeException e) { - throw e; - } catch (IOException|DaoException e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportTimelineData(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportTimelineData(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTypesOfCancers.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTypesOfCancers.java deleted file mode 100644 index 9e119f039cc..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportTypesOfCancers.java +++ /dev/null @@ -1,156 +0,0 @@ -/* - * Copyright (c) 2015 - 2021 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoTypeOfCancer; -import org.mskcc.cbio.portal.model.TypeOfCancer; -import org.mskcc.cbio.portal.scripts.ConsoleRunnable; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.mskcc.cbio.portal.util.SpringUtil; - -/** - * Load all the types of cancer and their names from a file. - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class ImportTypesOfCancers extends ConsoleRunnable { - - public static final int EXPECTED_DATAFILE_COLUMN_COUNT = 4; - - /** - * Executed by perl script importTypesOfCancer.pl - parses command line arguments and calls load() - */ - public void run() { - if (args.length < 1) { - throw new UsageException( "importTypesOfCancer.pl", null, " "); - } - String filePath = args[0]; - boolean clobber = true; - if (args.length > 1) { - String clobberArgString = args[1]; // positional argument - if (clobberArgString.equalsIgnoreCase("f") || clobberArgString.equalsIgnoreCase("false")) { - clobber = false; - } - } - try { - load(new File(filePath), clobber); - } catch (IOException|DaoException e) { - throw new RuntimeException(e); - } - } - - public static void load(File file, boolean clobber) throws IOException, DaoException { - ProgressMonitor.setCurrentMessage("Loading cancer types..."); - List typeOfCancerList = parseCancerTypesFromFile(file); - SpringUtil.initDataSource(); - if (clobber) { - ProgressMonitor.setCurrentMessage("Deleting all previous cancer types..."); - DaoTypeOfCancer.deleteAllRecords(); //TODO - remove this option - foreign key constraints may mean large cascade effects (possibly the deletion of all studies) - instead, change the option to 'deleteTypeOfCancerIfNotPresent' and add a loop through existing typeOfCancer records, removing those which are not in the parsed typeOfCancerList - } - writeRecordsToDatabase(typeOfCancerList, clobber); - ProgressMonitor.setCurrentMessage("Done."); - ConsoleUtil.showMessages(); - } - - private static List parseCancerTypesFromFile(File file) throws IOException { - ProgressMonitor.setCurrentMessage(String.format("Reading cancer types from file '%s'...", file.getPath())); - List typeOfCancerList = new ArrayList(); - Scanner scanner = new Scanner(file); - while (scanner.hasNextLine()) { - String nextLine = scanner.nextLine(); - String[] fields = nextLine.split("\t", -1); - throwExceptionIfColumnCountIsWrong(file, nextLine, fields, EXPECTED_DATAFILE_COLUMN_COUNT); - TypeOfCancer typeOfCancer = new TypeOfCancer(); - String typeOfCancerId = fields[0].trim(); - typeOfCancer.setTypeOfCancerId(typeOfCancerId.toLowerCase()); - typeOfCancer.setName(fields[1].trim()); - typeOfCancer.setDedicatedColor(fields[2].trim()); - typeOfCancer.setShortName(typeOfCancerId); - typeOfCancer.setParentTypeOfCancerId(fields[3].trim().toLowerCase()); - typeOfCancerList.add(typeOfCancer); - } - return typeOfCancerList; - } - - private static void throwExceptionIfColumnCountIsWrong(File file, String nextLine, String[] fields, int expectedDatafileColumnCount) throws IOException { - if (fields.length != expectedDatafileColumnCount) { - String msg = String.format("Cancer type file '%s' contains a line which is not %d-column tab-delimited." + - " Expected fields can be seen here: https://docs.cbioportal.org/5.1-data-loading/data-loading/file-formats#cancer-type" + - " The invalid line has %d columns:\n%s", file.getPath(), expectedDatafileColumnCount, fields.length, nextLine); - for (int i = 0; i < fields.length ; i++) { - msg = msg + String.format(" field#%d(len%d):'%s'\n", i, fields[i].length(), fields[i]); - } - throw new IOException(msg); - } - } - - private static void writeRecordsToDatabase(List typeOfCancerList, boolean clobber) throws IOException, DaoException { - int numNewCancerTypes = 0; - for (TypeOfCancer typeOfCancer : typeOfCancerList) { - if (!clobber && typeOfCancerExistsInDatabase(typeOfCancer)) { - ProgressMonitor.logWarning(String.format("Cancer type with id '%s' already exists. Skipping.", typeOfCancer.getTypeOfCancerId())); - } else { - DaoTypeOfCancer.addTypeOfCancer(typeOfCancer); - numNewCancerTypes++; - } - } - ProgressMonitor.setCurrentMessage(String.format(" --> Loaded %d new cancer types.", numNewCancerTypes)); - } - - private static boolean typeOfCancerExistsInDatabase(TypeOfCancer typeOfCancer) throws DaoException { - return DaoTypeOfCancer.getTypeOfCancerById(typeOfCancer.getTypeOfCancerId()) != null; - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public ImportTypesOfCancers(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new ImportTypesOfCancers(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportUsers.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportUsers.java deleted file mode 100644 index c886c8b8bbe..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ImportUsers.java +++ /dev/null @@ -1,118 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -// imports -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; - -import java.io.*; -import java.util.*; - -/** - * Import a file of users and their authorities. - * - * File contains the fields: - * - * EMAIL_ADDRESS\tUSERNAME\tENABLED\tAUTHORITIES - * - * AUTHORITIES is semicolon separated list of authorites - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * @author Benjamin Gross - */ -public class ImportUsers { - - public static void main(String[] args) throws Exception { - if (args.length == 0) { - System.out.println("command line usage: java org.mskcc.cbio.portal.scripts.ImportUsers "); - return; - } - - ProgressMonitor.setConsoleMode(true); - - SpringUtil.initDataSource(); - - File file = new File(args[0]); - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); - int count = 0; - while (line != null) { - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - if (!line.startsWith("#") && line.trim().length() > 0) { - try { - addUser(line); - count++; - } catch (Exception e) { - System.err.println("Could not add line '" + line + "'. " + e); - } - } - line = buf.readLine(); - } - System.err.println("Added " + count + " user access rights."); - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } - - private static void addUser(String line) throws Exception { - line = line.trim(); - String parts[] = line.split("\t"); - if (parts.length != 4) { - throw new IllegalArgumentException("Missing a user attribute, parts: " + parts.length); - } - String email = parts[0]; - String name = parts[1]; - Boolean enabled = Boolean.valueOf(parts[2]); - List authorities = Arrays.asList(parts[3].split(";")); - - // if user doesn't exist create them - User user = DaoUser.getUserByEmail(email); - if (null == user) { - user = new User(email, name, enabled); - DaoUser.addUser(user); - } - - // if exist, delete user authorities - UserAuthorities currentAuthorities = DaoUserAuthorities.getUserAuthorities(user); - if (currentAuthorities != null) { - DaoUserAuthorities.removeUserAuthorities(user); - } - - // add new authorities - UserAuthorities userAuthorities = new UserAuthorities(email, authorities); - DaoUserAuthorities.addUserAuthorities(userAuthorities); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/MergeProfileData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/MergeProfileData.java deleted file mode 100644 index 7ef5dafb28b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/MergeProfileData.java +++ /dev/null @@ -1,121 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.IOException; -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileReader; -import java.io.FileWriter; - -import java.util.LinkedHashMap; -import java.util.LinkedHashSet; -import java.util.Map; -import java.util.Set; - -/** - * - * @author jgao - */ -public class MergeProfileData { - public static void main(String[] args) { - if (args.length<3) { - System.err.println( "incorrect number of arguments. Arguments should be " - + "' ...'." ); - return; - } - - try { - Map> data = new LinkedHashMap>(); - Set cases = new LinkedHashSet(); - for (int i=1; i> - * @throws IOException - */ - private static void readData(String file, Map> data, - Set cases) throws IOException { - BufferedReader in = new BufferedReader(new FileReader(file)); - String line = in.readLine(); - String[] headers = line.split("\t"); - int nCases = headers.length; - for (int i=1; i map = new LinkedHashMap(); - data.put(parts[0], map); - for (int i=1; i> data, - Set cases) throws IOException { - BufferedWriter out = new BufferedWriter(new FileWriter(file)); - out.write("geneSymbol"); - for (String header : cases) { - out.write("\t"+header); - } - out.newLine(); - - for (Map.Entry> entry : data.entrySet()) { - out.write(entry.getKey()); - Map map = entry.getValue(); - for (String header : cases) { - out.write("\t"); - String value = map.get(header); - if (value==null) { - out.write("NA"); - } else { - out.write(value); - } - } - out.newLine(); - } - out.close(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/MutationFilter.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/MutationFilter.java deleted file mode 100644 index f006f65203e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/MutationFilter.java +++ /dev/null @@ -1,289 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.util.Arrays; -import java.util.HashMap; -import java.util.HashSet; -import java.util.Map; -import java.util.Set; - -import org.mskcc.cbio.portal.model.ExtendedMutation; - -/** - * Filter mutations as they're imported into the CGDS dbms. - *

    - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class MutationFilter { - - private Set whiteListGenesForPromoterMutations; - - private int accepts=0; - private int germlineWhitelistAccepts=0; - private int somaticWhitelistAccepts=0; - private int unknownAccepts=0; - public int decisions=0; - private int mutationStatusNoneRejects=0; - private int lohOrWildTypeRejects=0; - private int emptyAnnotationRejects=0; - private int missenseGermlineRejects=0; - private int redactedRejects=0; - public Map rejectionMap = new HashMap(); - - /** - * Construct a MutationFilter with no white lists. - * This filter will - *
    - * REJECT Silent, LOH, Intron and Wildtype mutations, and - *
    - * KEEP all other mutations. - */ - public MutationFilter() throws IllegalArgumentException{ - whiteListGenesForPromoterMutations = new HashSet(); - whiteListGenesForPromoterMutations.add(Long.valueOf(7015)); // TERT - } - - /** - * Indicate whether the specified mutation should be accepted as input to - * the CGDS Database. - *

    - * @param mutation - * an ExtendedMutation. - *
    - * @return true if the mutation should be imported into the dbms - */ - public boolean acceptMutation(ExtendedMutation mutation, Set filteredMutations) { - this.decisions++; - - /* - * Mutation types from Firehose: - +------------------------+ - | De_novo_Start | - | Frame_Shift_Del | - | Frame_Shift_Ins | - | Indel | - | In_Frame_Del | - | In_Frame_Ins | - | Missense | - | Missense_Mutation | - | Nonsense_Mutation | - | Nonstop_Mutation | - | Splice_Site | - | Stop_Codon_Del | - | Translation_Start_Site | - +------------------------+ - */ - - // Do not accept mutations with Mutation_Status of None - if (safeStringTest( mutation.getMutationStatus(), "None" )) { - mutationStatusNoneRejects++; - return false; - } - - // Do not accept LOH or Wildtype Mutations - if( safeStringTest( mutation.getMutationStatus(), "LOH" ) || - safeStringTest( mutation.getMutationStatus(), "Wildtype" ) ){ - lohOrWildTypeRejects++; - return false; - } - - // Do not accept Redacted mutations - if (safeStringTest(mutation.getValidationStatus(), "Redacted")) { - redactedRejects++; - return false; - } - - //Filter by types if specified in the meta file, else filter for the default types - if (filteredMutations != null) { - if (filteredMutations.contains(mutation.getMutationType())) { - addRejectedVariant(rejectionMap, mutation.getMutationType()); - return false; - } else { - if( safeStringTest( mutation.getMutationType(), "5'Flank" ) ) { - mutation.setProteinChange("Promoter"); - } - return true; - } - } else { - // Do not accept Silent, Intronic, 3'UTR, 5'UTR or IGR Mutations - if( safeStringTest( mutation.getMutationType(), "Silent" ) || - safeStringTest( mutation.getMutationType(), "Intron" ) || - safeStringTest( mutation.getMutationType(), "3'UTR" ) || - safeStringTest( mutation.getMutationType(), "3'Flank" ) || - safeStringTest( mutation.getMutationType(), "5'UTR" ) || - safeStringTest( mutation.getMutationType(), "IGR") ){ - addRejectedVariant(rejectionMap, mutation.getMutationType()); - return false; - } - - if( safeStringTest( mutation.getMutationType(), "5'Flank" ) ) { - if (whiteListGenesForPromoterMutations.contains(mutation.getEntrezGeneId())){ - mutation.setProteinChange("Promoter"); - } else { - addRejectedVariant(rejectionMap, mutation.getMutationType()); - return false; - } - } - - this.accepts++; - return true; - } - } - - /** - * Provide number of decisions made by this MutationFilter. - * @return the number of decisions made by this MutationFilter - */ - public int getDecisions(){ - return this.decisions; - } - - /** - * Provide number of ACCEPT (return true) decisions made by this MutationFilter. - * @return the number of ACCEPT (return true) decisions made by this MutationFilter - */ - public int getAccepts(){ - return this.accepts; - } - - public int getMutationStatusNoneRejects() { - return mutationStatusNoneRejects; - } - - /** - * Provide number of REJECT decisions for LOH or Wild Type Mutations. - * @return number of REJECT decisions for LOH or Wild Type Mutations. - */ - public int getLohOrWildTypeRejects() { - return this.lohOrWildTypeRejects; - } - - /** - * Provide number of REJECT decisions for Emtpy Annotation Mutations. - * @return number of REJECT decisions for Empty Annotation Mutations. - */ - public int getEmptyAnnotationRejects() { - return this.emptyAnnotationRejects; - } - - /** - * Provide number of REJECT decisions for Missense Germline Mutations. - * @return number of REJECT decisions for Missense Germline Mutations. - */ - public int getMissenseGermlineRejects() { - return this.missenseGermlineRejects; - } - - /** - * Provide number of germline whitelist ACCEPT (return true) decisions made by this MutationFilter. - * @return the number of germline whitelist ACCEPT (return true) decisions made by this MutationFilter - */ - public int getGermlineWhitelistAccepts(){ - return this.germlineWhitelistAccepts; - } - - /** - * Provide number of somatic whitelist ACCEPT (return true) decisions made by this MutationFilter. - * @return the number of somatic whitelist ACCEPT (return true) decisions made by this MutationFilter - */ - public int getSomaticWhitelistAccepts(){ - return this.somaticWhitelistAccepts; - } - - /** - * Provide number of unknown whitelist ACCEPT (return true) decisions made by this MutationFilter. - * @return the number of unknown ACCEPT (return true) decisions made by this MutationFilter - */ - public int getUnknownAccepts(){ - return this.unknownAccepts; - } - - public int getRedactedRejects() - { - return this.redactedRejects; - } - - public Map getRejectionMap() { - return this.rejectionMap; - } - - public void addRejectedVariant(Map rejectionMap, String mutation) { - this.rejectionMap.computeIfAbsent(mutation, (k) -> 0); - this.rejectionMap.computeIfPresent(mutation, (k, v) -> v + 1); - } - - /** - * Provide number of REJECT (return false) decisions made by this MutationFilter. - * @return the number of REJECT (return false) decisions made by this MutationFilter - */ - public int getRejects(){ - return this.decisions - this.accepts; - } - - public String getStatistics(){ - String statistics = "Mutation filter decisions: " + this.getDecisions() + - "\nRejects: " + this.getRejects() + - "\nMutation Status 'None' Rejects: " + this.getMutationStatusNoneRejects() + - "\nLOH or Wild Type Rejects: " + this.getLohOrWildTypeRejects() + - "\nEmpty Annotation Rejects: " + this.getEmptyAnnotationRejects() + - "\nMissense Germline Rejects: " + this.getMissenseGermlineRejects(); - - Map variantsRejected = this.getRejectionMap(); - for (Map.Entry variant : variantsRejected.entrySet()) { - statistics = statistics + "\n" + variant.getKey() + " Rejects: " + variant.getValue(); - } - - return statistics; - } - - /** - * Carefully look for pattern in data. - *

    - * @param data - * @param pattern - * @return false if data is null; true if data starts with pattern, independent of case - */ - private boolean safeStringTest( String data, String pattern ){ - if( null == data){ - return false; - } - return data.toLowerCase().startsWith( pattern.toLowerCase() ); - } - - @Override - public String toString(){ - StringBuffer sb = new StringBuffer(); - return( sb.toString() ); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/NormalizeExpressionLevels.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/NormalizeExpressionLevels.java deleted file mode 100644 index a5c8d642025..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/NormalizeExpressionLevels.java +++ /dev/null @@ -1,655 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.*; -import java.util.*; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * Given expression and CNV data for a set of samples generate normalized expression values. - * - * Each gene is normalized separately. First, the expression distribution for unaltered copies of the - * gene is estimated by calculating the mean and variance of the expression values for samples in which - * the gene is diploid (as reported by the CNV data). We call this the unaltered distribution. - * - * If the gene has no diploid samples, then its normalized expression is reported as NA. - * Otherwise, for every sample, the gene's normalized expression is reported as - * - * (r - mu)/sigma - * - * where r is the raw expression value, and mu and sigma are the mean and standard deviation - * of the unaltered distribution, respectively. - * - * The syntax is simple: - * - * java NormalizeExpressionLevels [] - * - * The output is written onto a file named "output_file" - * - * Any number of columns may precede the data. However, the following must be satisfied: - * - * - the first column provides gene identifiers - * - * Algorithm - * Input copy number (CNA) and expression (exp) files - * concept: - * for each gene{ - * identify diploid cases in CNA - * obtain mean and sd of exp of diploid cases - * for each case{ - * zScore <- (value - mean)/sd - * } - * } - * - * implementation: - * read CNA: build hash geneCopyNumberStatus: gene -> Array of (caseID, value ) pairs - * read exp: skip normal cases; - * for each gene{ - * get mean and s.d. of elements of diploids - * get zScore for each case - * } - * - * @author Giovanni Ciriello - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * - */ -public class NormalizeExpressionLevels{ - - public static final String TCGA_NORMAL_SUFFIX = "-11"; - private static final String ENTREZ_GENE_ID_COLUMN = "Entrez_Gene_Id"; - private static final String HUGO_SYMBOL_COLUMN = "Hugo_Symbol"; - private static final String NOT_AVAILABLE = "NA"; - private static final int NO_POSITION = -1; - private static DaoGeneOptimized daoGeneOptimized; - - private static HashMap> geneCopyNumberStatus = null; - private static int SAMPLES; - private static String zScoresFile; - private static String normalSampleSuffix; - private static final int DEFAULT_MIN_NUM_DIPLOIDS = 10; - private static int MIN_NUM_DIPLOIDS = DEFAULT_MIN_NUM_DIPLOIDS; - private static final int MIN_NUM_ALLOWED_DIPLOIDS = 3; - - private static final Logger LOG = LoggerFactory.getLogger(NormalizeExpressionLevels.class); - - public static void main (String[]args) { - try { - SpringUtil.initDataSource(); - // init dao gene - daoGeneOptimized = DaoGeneOptimized.getInstance(); - driver(args); - } - catch (RuntimeException e) { - LOG.error(e.getMessage()); - } - } - - /** - * Helper function which allows routine to be - * called by other java code and get a return status code. - */ - public static void driver(String[] args) throws RuntimeException { - // TODO, perhaps: use command line parser - if ( args.length != 4 && args.length != 5) { - fatalError( "incorrect number of arguments. Arguments should be ' []'." ); - } - String copyNumberFile = args[0]; - String expressionFile = args[1]; - zScoresFile = args[2]; - normalSampleSuffix = args[3]; - if ( args.length == 5) { - try { - MIN_NUM_DIPLOIDS = Integer.parseInt(args[4] ); - } catch (NumberFormatException e) { - fatalError( "incorrect arguments. 'min_number_of_diploids', was entered as " + args[4] + " but must be an integer." ); - } - if ( MIN_NUM_DIPLOIDS < MIN_NUM_ALLOWED_DIPLOIDS ) { - fatalError( "incorrect arguments. 'min_number_of_diploids', was entered as " + args[4] + " but must be at least " + MIN_NUM_ALLOWED_DIPLOIDS + "." ); - } - } - - if (copyNumberFile!=null) { - geneCopyNumberStatus = readCopyNumberFile(copyNumberFile); - } - computeZScoreXP(expressionFile); - } - - /** - * Resolves a CanonicalGene by entrez gene id or hugo symbol. - * Attempts to resolve gene by entrez gene id first. If unsuccessful or - * entrez gene id column does not exist then falls back on hugo symbol. - * - * Returns null if gene cannot be resolved by entrez gene id or hugo symbol. - * @param values - * @param entrezGeneIdIndex - * @param hugoGeneSymbolIndex - * @return - */ - private static CanonicalGene resolveCanonicalGene(String[] values, Integer entrezGeneIdIndex, Integer hugoGeneSymbolIndex) { - CanonicalGene gene = null; - // try entrez gene id before hugo symbol if possible - if (entrezGeneIdIndex != -1) { - try{ - gene = daoGeneOptimized.getGene(Long.parseLong(values[entrezGeneIdIndex])); - } catch (NumberFormatException e) {} - } - if (gene == null && hugoGeneSymbolIndex != -1) { - gene = daoGeneOptimized.getNonAmbiguousGene(values[hugoGeneSymbolIndex]); - } - // log warning if failed to resolved canonical gene - if (gene == null) { - String message = "Could not resolve gene from: "; - message += "entrez gene id= " + (entrezGeneIdIndex != -1 ? values[entrezGeneIdIndex] : "unavailable, "); - message += "hugo symbol= " + (hugoGeneSymbolIndex != -1 ? values[hugoGeneSymbolIndex] : "unavailable"); - warning(message); - } - return gene; - } - - private static void computeZScoreXP(String file) { - BufferedReader in = null; - PrintWriter zscoreFileWriter = null; - - try { - zscoreFileWriter = new PrintWriter(new FileWriter( zScoresFile )); - } catch (IOException e) { - fatalError( "cannot open '" + zScoresFile + "' for writing."); - } - try { - in = new BufferedReader(new FileReader(file)); - } catch (FileNotFoundException e) { - fatalError( "cannot read in '" + file + "'."); - } - String header; - try { - header = in.readLine(); - String[]values = header.split("\t"); - int entrezGeneIdIndex = findColumnIndex(values, ENTREZ_GENE_ID_COLUMN); - int hugoGeneSymbolIndex = findColumnIndex(values, HUGO_SYMBOL_COLUMN); - if (entrezGeneIdIndex == -1 && hugoGeneSymbolIndex == -1) { - fatalError("Expression file header must contain at least one of the following: " + ENTREZ_GENE_ID_COLUMN + ", " + HUGO_SYMBOL_COLUMN); - } - - int firstSamplePosition = getFirstDataColumn( values ); - // catch error if no sample id contains SampleNamePrefix - if ( NO_POSITION == firstSamplePosition ) { - fatalError("no sample id in , '" + file + "'."); - } - - SAMPLES = values.length;// - firstSamplePosition; - String[]samples = new String[SAMPLES]; // the names of all samples - HashSet normalSamples = new HashSet(); - - // make set of case IDs of normal samples, and list of all truncated samples - for (int i=firstSamplePosition; i outputLine = new ArrayList(); - - // header contains only ids of tumor samples - if (firstSamplePosition==1) { - outputLine.add(values[0]); - } else { - outputLine.add("Hugo_Symbol"); - outputLine.add("Entrez_Gene_Id"); - } - for (int i=firstSamplePosition;i tumorSampleExpressions = new ArrayList(); - for (int i=firstSamplePosition;i cnStatus = geneCopyNumberStatus==null ? null : geneCopyNumberStatus.get(gene.getEntrezGeneId()); - double[] zscores = getZscore( tumorSampleExpressions, cnStatus ); - - if (zscores != null) { - rowsWithSomeDiploidCases++; - - if (firstSamplePosition==1) { - outputLine.add(values[0]); - } else { - outputLine.add(gene.getHugoGeneSymbolAllCaps()); - outputLine.add(Long.toString(gene.getEntrezGeneId())); - } - - for (int k =0;k in '" + file + "'."); - } - zscoreFileWriter.close(); - } - - private static int getFirstDataColumn( String[] values) { - // TODO: instead of guessing, we should normalizing - for (int i=0;i - * @return array of z-Scores for the expression data; null if there were no diploid values - */ - private static double[] getZscore( ArrayList xp, ArrayList cn) { - double[] z = null; - double[] diploid = new double[SAMPLES]; - HashSet diploidSamples = new HashSet(); - String DiploidSample = "0"; // CN value of 0 indicates diploid - - if (cn!=null) { - for (int i=0;i xp, double avg, double std) { - double[]z = new double[xp.size()]; - - if ( 0.0d == std) { - // this should not happen - fatalError( "cannot normalize relative to distribution with standard deviation of 0.0." ); - } - for (int i=0;i> that - * maps geneName -> ArrayList< [ sampleName, value ] > - */ - public static HashMap> readCopyNumberFile(String file) { - - HashMap> map = new HashMap>(); - BufferedReader in = null; - try { - in = new BufferedReader(new FileReader(file)); - } catch (FileNotFoundException e) { - fatalError( "cannot open copy number file '" + file + "' for reading."); - } - - // assumes single header line - String header; - try { - header = in.readLine(); - String[]values = header.split("\t"); - int entrezGeneIdIndex = findColumnIndex(values, ENTREZ_GENE_ID_COLUMN); - int hugoGeneSymbolIndex = findColumnIndex(values, HUGO_SYMBOL_COLUMN); - if (entrezGeneIdIndex == -1 && hugoGeneSymbolIndex == -1) { - fatalError("Copy number file header must contain at least one of the following: " + ENTREZ_GENE_ID_COLUMN + ", " + HUGO_SYMBOL_COLUMN); - } - int firstSamplePosition = getFirstDataColumn( values ); - // error if no sample id contains SampleNamePrefix - if ( NO_POSITION == firstSamplePosition ) { - fatalError( "no sample id contains in , '" + file + "'."); - } - - SAMPLES = values.length; // - firstSamplePosition; - String[]samples = new String[SAMPLES]; - HashSet tempSamplesNames = new HashSet(); - for (int i=firstSamplePosition;i, '" + file + "'."); - } - tempSamplesNames.add( samples[i] ); - } - LOG.info(file+": "+(SAMPLES-firstSamplePosition)+" SAMPLES"); - - String line; - while((line=in.readLine())!=null) { - values = line.split("\t"); - CanonicalGene gene = resolveCanonicalGene(values, entrezGeneIdIndex, hugoGeneSymbolIndex); - if (gene==null) { - continue; - } - - Long entrez = gene.getEntrezGeneId(); - if (!map.containsKey(entrez)) { - ArrayList tmp = new ArrayList(); - for (int i = firstSamplePosition;i, '" + file + "'."); - } - } - - LOG.info(file+": "+ map.size() +" GENES"); - if ( map.isEmpty() ) { - fatalError( "no gene IDs in copy number file '" + file + "'."); - } - } catch (IOException e) { - fatalError( "cannot read copy number file '" + file + "'."); - } - return map; - } - - /** - * Return the truncated version of a TCGA sample name - */ - private static String truncatedSampleName(String name) { - if (!name.startsWith("TCGA-")) { - return name; - } - - String truncatedName = ""; - int dash = 0; - for (int i=0;i s, String delimiter) { - if (s.isEmpty()) return ""; - - Iterator iter = s.iterator(); - StringBuffer buffer = new StringBuffer(iter.next()); - while (iter.hasNext()) { - buffer.append(delimiter).append(iter.next()); - } - return buffer.toString(); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/RemoveCancerStudy.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/RemoveCancerStudy.java deleted file mode 100644 index ad51568335f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/RemoveCancerStudy.java +++ /dev/null @@ -1,98 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; - -/** - * Command Line Tool to Remove a Single Cancer Study. - */ -public class RemoveCancerStudy extends ConsoleRunnable { - - public void run() { - try { - if (args.length < 1) { - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - throw new UsageException( - "removeCancerStudy", - null, - ""); - } - String cancerStudyIdentifier = args[0]; - - SpringUtil.initDataSource(); - ProgressMonitor.setCurrentMessage( - "Checking if Cancer study with identifier " + - cancerStudyIdentifier + - " already exists before removing..."); - if (DaoCancerStudy.doesCancerStudyExistByStableId(cancerStudyIdentifier)) { - ProgressMonitor.setCurrentMessage( - "Cancer study with identifier " + - cancerStudyIdentifier + - " found in database, removing..."); - DaoCancerStudy.deleteCancerStudy(cancerStudyIdentifier); - } - else { - ProgressMonitor.setCurrentMessage( - "Cancer study with identifier " + - cancerStudyIdentifier + - " does not exist the the database, not removing..."); - } - } catch (RuntimeException e) { - throw e; - } catch (DaoException e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public RemoveCancerStudy(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new RemoveCancerStudy(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ResetDatabase.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ResetDatabase.java deleted file mode 100644 index 82cad8990f0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ResetDatabase.java +++ /dev/null @@ -1,99 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; - -/** - * Empty the database. - * - * @author Ethan Cerami - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class ResetDatabase { - - public static final int MAX_RESET_SIZE = 6; - - /** - * Remove all records from any size database. - * Whenever a new Dao* class is defined, must add its deleteAllRecords() method here. - * - * @throws DaoException - */ - public static void resetAnySizeDatabase() throws DaoException { - System.out.print("resetting all database."); - DaoUser.deleteAllRecords(); - DaoUserAuthorities.deleteAllRecords(); - DaoTypeOfCancer.deleteAllRecords(); - DaoCancerStudy.deleteAllRecords(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - daoGene.deleteAllRecords(); - DaoGeneset.deleteAllRecords(); - DaoInfo.clearVersion(); - DaoSampleProfile.deleteAllRecords(); - DaoGeneticAlteration daoGenetic = DaoGeneticAlteration.getInstance(); - daoGenetic.deleteAllRecords(); - DaoMutSig.deleteAllRecords(); - DaoGeneticProfile.deleteAllRecords(); - DaoSampleList daoSampleList = new DaoSampleList(); - daoSampleList.deleteAllRecords(); - DaoClinicalData.deleteAllRecords(); - DaoClinicalEvent.deleteAllRecords(); - DaoCopyNumberSegmentFile.deleteAllRecords(); - DaoMutation.deleteAllRecords(); - DaoGeneticProfileSamples.deleteAllRecords(); - DaoPatient.deleteAllRecords(); - DaoSample.deleteAllRecords(); - System.out.println("all database reset."); - } - - public static void resetDatabase() throws DaoException { - - // safety measure: don't reset a big database - if (MAX_RESET_SIZE < DaoCancerStudy.getCount()) { - throw new DaoException("Database has " + DaoCancerStudy.getCount() + - " studies, and we don't reset a database with more than " + MAX_RESET_SIZE + " records."); - } else { - resetAnySizeDatabase(); - } - - } - - public static void main(String[] args) throws DaoException { - SpringUtil.initDataSource(); - StatDatabase.statDb(); - ResetDatabase.resetDatabase(); - System.err.println("Database Cleared and Reset."); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/StatDatabase.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/StatDatabase.java deleted file mode 100644 index ecf160aa089..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/StatDatabase.java +++ /dev/null @@ -1,59 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.DatabaseProperties; - -/** - * Command Line Tool to Output Basic Database Stats, including Host Name, DB Name, and User Name / Password. - * - */ -public class StatDatabase { - - public static void main(String[] args) throws DaoException { - statDb(); - } - - public static void statDb() { - DatabaseProperties dbProperties = DatabaseProperties.getInstance(); - String host = dbProperties.getDbHost(); - String userName = dbProperties.getDbUser(); - String password = dbProperties.getDbPassword(); - String database = dbProperties.getDbName(); - System.out.println ("Host: " + host); - System.out.println ("User Name: " + userName); - System.out.println ("Password: " + password); - System.out.println ("Database: " + database); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/TransactionalScriptRunner.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/TransactionalScriptRunner.java deleted file mode 100644 index 7ee8d94af52..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/TransactionalScriptRunner.java +++ /dev/null @@ -1,109 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import java.io.File; - -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.util.TransactionalScripts; -import org.springframework.context.support.FileSystemXmlApplicationContext; -import org.springframework.transaction.TransactionStatus; -import org.springframework.transaction.support.TransactionCallback; -import org.springframework.transaction.support.TransactionTemplate; - -/** - * A high-level script runner than can be used to run a batch of scripts within a - * transactional context. It's handy loading a batch of data of different types. - * This is already deprecated, because in the long run everything should be - * Runnable and/or work using Spring Batch or similar, but this is a quick and - * easy way to get a transactional block of data loaded through different - * import scripts defined elsewhere. - * - * The principle is a simple one: we get a set of lines on an input stream and - * we read from it. The lines are parsed into a class and an array of String - * arguments, which are then passed to the corresponding class as a call to - * their static main method. All this happens within a single JVM context, - * which will enclose a dependency-injected Spring context file. So we actually - * configure the whole caboodle (nastily) from Spring itself. - * - * Typically we'd expect two context files to be used: one for the database - * (which will be constant for most applications) and a second which which will - * be generated for a study load. So a Python wrapper can generate the second - * file, and pass it with a DB file configured for the whole portal to load - * a study transactionally. This pushes some of the logic into the Python code, - * but does mean that load errors don't corrupt the whole database. - * - * @author stuartw - * - */ -public class TransactionalScriptRunner extends ConsoleRunnable { - - private TransactionTemplate transactionTemplate; - - private TransactionalScriptRunner(String[] args) { - super(args); - } - - public static void main (String[] args) { - (new TransactionalScriptRunner(args)).run(); - } - - public void run () { - String result = null; - - if (args.length == 0) { - throw new UsageException("TransactionalScriptRunner", "context file", "context_file"); - } - - FileSystemXmlApplicationContext context = null; - - // Load the context files. This should set up the DB and core - try { - - // Convert files to URLs to make them work as absolutes - // See: Javadocs for FileSystemXmlApplicationContext - for(int i = 0; i < args.length; i++) { - args[i] = new File(args[i]).toURI().toURL().toString(); - } - - context = new FileSystemXmlApplicationContext(args); - - // Inject the context into SpringUtil, so we don't need to initialize again. - // This ensures that the XML files from the command line provide a complete - // context and we don't get data sources later from anywhere else. - SpringUtil.initDataSource(context); - - // Set up the transaction template - transactionTemplate = (TransactionTemplate) context.getBean("scriptTransactionTemplate"); - if (transactionTemplate == null) { - throw new Exception("Can't find transaction template in Spring context"); - } - - // Locate the scripts data - TransactionalScripts scripts = context.getBean(TransactionalScripts.class); - - // And run the scripts - runInTransaction(scripts); - - } catch (Exception e) { - result = e.getLocalizedMessage(); - } finally { - if (context != null) { - context.close(); - } - } - - // If something went wrong, notify - if (result != null) { - throw new RuntimeException(result); - } - } - - public void runInTransaction(final TransactionalScripts scripts) { - transactionTemplate.execute(new TransactionCallback() { - // the code in this method executes in a transactional context - public Object doInTransaction(TransactionStatus status) { - scripts.run(); - return null; - } - }); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/TrimmedProperties.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/TrimmedProperties.java deleted file mode 100644 index 8cb0f6e37f9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/TrimmedProperties.java +++ /dev/null @@ -1,45 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ -package org.mskcc.cbio.portal.scripts; - -import java.util.Properties; - -@SuppressWarnings("serial") -/** - * This class overrides getProperties method to return the trimmed - * value of the property. - * - * @author pieterlukasse - * - */ -public class TrimmedProperties extends Properties { - - @Override - public String getProperty(String key) { - if (super.getProperty(key) == null) - return null; - else - return super.getProperty(key).trim(); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateCancerStudy.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateCancerStudy.java deleted file mode 100644 index af8a5ba9988..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateCancerStudy.java +++ /dev/null @@ -1,94 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.*; - - -/** - * Command Line Tool to update the status of a Single Cancer Study. - */ -public class UpdateCancerStudy extends ConsoleRunnable { - public void run() { - try { - // check args - String progName = "updateCancerStudy"; - String argSpec = " "; - if (args.length < 2) { - // an extra --noprogress option can be given to avoid the messages regarding memory usage and % complete - throw new UsageException( - progName, - null, - argSpec); - } - - String cancerStudyIdentifier = args[0]; - String cancerStudyStatus = args[1]; - //validate: - DaoCancerStudy.Status status; - try { - status = DaoCancerStudy.Status.valueOf(cancerStudyStatus); - } - catch (IllegalArgumentException ia) { - throw new UsageException(progName, null, argSpec, - "Invalid study status parameter: " + cancerStudyStatus); - } - - SpringUtil.initDataSource(); - CancerStudy theCancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - if (theCancerStudy == null) { - throw new IllegalArgumentException("cancer study identified by cancer_study_identifier '" - + cancerStudyIdentifier + "' not found in dbms or inaccessible to user."); - } - ProgressMonitor.setCurrentMessage("Updating study status to : '" + status.name() + "' for study: " + cancerStudyIdentifier); - DaoCancerStudy.setStatus(status, cancerStudyIdentifier); - } catch (RuntimeException e) { - throw e; - } catch (DaoException e) { - throw new RuntimeException(e); - } - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public UpdateCancerStudy(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new UpdateCancerStudy(args); - runner.runInConsole(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateGenePanel.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateGenePanel.java deleted file mode 100644 index 128f28a7c63..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateGenePanel.java +++ /dev/null @@ -1,152 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.ProgressMonitor; - -import java.io.*; -import java.util.*; - -import joptsimple.*; - -import static org.mskcc.cbio.portal.util.GenePanelUtil.extractGenes; -import static org.mskcc.cbio.portal.util.GenePanelUtil.extractPropertyValue; - -/** - * Updates an existing, potentially in use gene panel. - * - * @author jtquach1 - */ -public class UpdateGenePanel extends ConsoleRunnable { - - private File genePanelFile; - private static final Scanner s = new Scanner(System.in); - - @Override - public void run() { - try { - String progName = "UpdateGenePanel"; - String description = "Update gene panel files."; - - OptionParser parser = new OptionParser(); - OptionSpec data = parser - .accepts("data", "gene panel file") - .withRequiredArg() - .describedAs("data_file.txt") - .ofType(String.class); - parser.accepts("noprogress", - "this option can be given to avoid the messages regarding memory usage and % complete"); - - OptionSet options; - try { - options = parser.parse(args); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, e.getMessage()); - } - File genePanel_f; - if (options.has(data)) { - genePanel_f = new File(options.valueOf(data)); - } else { - throw new UsageException(progName, description, parser, "'data' argument required."); - } - - setFile(genePanel_f); - importData(); - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new RuntimeException(e); - } - } - - public void importData() throws Exception { - ProgressMonitor.setCurrentMessage("Reading data from: " + genePanelFile.getAbsolutePath()); - Properties properties = new Properties(); - properties.load(new FileInputStream(genePanelFile)); - - ProgressMonitor.setCurrentMessage("Retrieving matching gene panel from database."); - String stableId = extractPropertyValue("stable_id", properties, true); - Set canonicalGenes = extractGenes(properties, true); - GenePanel genePanel = DaoGenePanel.getGenePanelByStableId(stableId); - - if (genePanel == null) { - ProgressMonitor.logWarning("Gene panel " + stableId + " does not exist in the database! Exiting."); - return; - } - - if (canonicalGenes == null || canonicalGenes.isEmpty()) { - ProgressMonitor.logWarning("Incoming gene panel is empty, which would result in the removal of all genes from gene panel " + stableId + ". Exiting."); - return; - } - - System.err.println("WARNING: You are about to make the following changes to gene panel " + stableId + ":"); - DaoGenePanel.updatePreview(genePanel, canonicalGenes); - System.err.println("Proceed? (Y/n)"); - - if (confirmContinue()) { - if (DaoSampleProfile.sampleProfileMappingExistsByPanel(genePanel.getInternalId())) { - ProgressMonitor.setCurrentMessage("Gene panel " + stableId - + " already exists in database and is being used. Proceeding with gene panel update!"); - } else { - ProgressMonitor.setCurrentMessage("Gene panel " + stableId - + " already exists in database but is unused. Proceeding with gene panel update!"); - } - DaoGenePanel.updateGenePanel(genePanel, canonicalGenes); - } - } - - private static boolean confirmContinue() { - boolean confirmed = false; - String answer = s.nextLine().toUpperCase(); - - switch (answer) { - case "Y": - System.err.println("Proceeding with update script."); - confirmed = true; - break; - case "N": - System.err.println("Exiting update script."); - break; - default: - System.err.println("Unrecognized input, exiting."); - break; - } - - return confirmed; - } - - public void setFile(File genePanelFile) { - this.genePanelFile = genePanelFile; - } - - /** - * Makes an instance to run with the given command line arguments. - * - * @param args the command line arguments to be used - */ - public UpdateGenePanel(String[] args) { - super(args); - } - - /** - * Runs the command as a script and exits with an appropriate exit code. - * - * @param args the arguments given on the command line - */ - public static void main(String[] args) { - ConsoleRunnable runner = new UpdateGenePanel(args); - System.out.print( - "WARNING: This script is ONLY for updating a gene panel, not for adding a new gene panel.\n" + - "To add a new gene panel, run the ImportGenePanel script.\n" + - "If you are making changes to an existing gene panel due to a miscount of genes, proceed.\n" + - "Otherwise, if you would like to add a new version of a gene panel, please exit this script\n" + - "and import the gene panel with a new stable ID!\n" + - "Will you proceed to update an existing gene panel? (Y/n)\n" - ); - - if (confirmContinue()) { - runner.runInConsole(); - s.close(); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateMetaData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateMetaData.java deleted file mode 100644 index d9669ed56f2..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/UpdateMetaData.java +++ /dev/null @@ -1,83 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.GeneticProfile; - -import java.io.File; - -/** - * Command Line to Update Meta Data Associated with a Genomic Profile. - */ -public class UpdateMetaData { - - public static void main(String[] args) throws Exception { - String usageLine = "command line usage: updateMetaData.pl "; - if (args.length < 1) { - System.err.println(usageLine); - return; - } - - ProgressMonitor.setConsoleMode(true); - SpringUtil.initDataSource(); - File descriptorFile = new File(args[0]); - - GeneticProfile geneticProfile = GeneticProfileReader.loadGeneticProfileFromMeta(descriptorFile); - - GeneticProfile existingGeneticProfile = DaoGeneticProfile.getGeneticProfileByStableId - (geneticProfile.getStableId()); - - // TODO: handle null existingGeneticProfile - System.out.println ("Found Genetic Profile: " + existingGeneticProfile.getStableId()); - System.out.println ("Changing name from: " + existingGeneticProfile.getProfileName()); - System.out.println (" to: " + geneticProfile.getProfileName()); - System.out.println ("Changing desc from: " + existingGeneticProfile.getProfileDescription()); - System.out.println (" to: " + geneticProfile.getProfileDescription()); - - boolean flag = DaoGeneticProfile.updateNameAndDescription - (existingGeneticProfile.getGeneticProfileId(), - geneticProfile.getProfileName(), geneticProfile.getProfileDescription()); - - if (flag) { - System.out.println ("Success!"); - } else { - System.out.println ("Update Failed!"); - } - - ConsoleUtil.showWarnings(); - System.err.println("Done."); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/UsageException.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/UsageException.java deleted file mode 100644 index 3b7cce2fbab..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/UsageException.java +++ /dev/null @@ -1,134 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import java.io.IOException; - -import joptsimple.OptionParser; - -/** - * RuntimeException to signal invalid command line usage - * - * @see {@link ConsoleRunnable} - */ -public class UsageException extends IllegalArgumentException { - - // the name of the command - private String prog; - // an OptionParser configured with the accepted options - private OptionParser parser; - // a string describing the arguments accepted - private String argspec; - // short description of the tool to display in the usage line - private String description; - // a final error/exit message - private String msg; - - /** - * Instantiates a UsageException using an OptionParser. - * - * @param prog the name of the command - * @param description short description of the tool to display in - * the usage line - * @param parser an OptionParser configured with the accepted options - */ - public UsageException( - String prog, - String description, - OptionParser parser) { - super("Invalid usage of the " + prog + " script"); - this.prog = prog; - this.description = description; - this.parser = parser; - } - - /** - * Instantiates a UsageException using an explicit argument specification. - * - * @param prog the name of the command - * @param description short description of the tool to display in - * the usage line - * @param argspec the string describing the arguments accepted - * - * @see - * chapter 12.01 of the POSIX specification, on utility argument - * syntax conventions - * - */ - public UsageException( - String prog, - String description, - String argspec) { - super("Invalid usage of the " + prog + " script"); - this.prog = prog; - this.description = description; - this.argspec = argspec; - } - - /** - * Instantiates a UsageException using an OptionParser. - * - * @param prog the name of the command - * @param description short description of the tool to display in - * the usage line - * @param parser an OptionParser configured with the accepted options - */ - public UsageException( - String prog, - String description, - OptionParser parser, - String msg) { - super(msg); - this.prog = prog; - this.description = description; - this.parser = parser; - this.msg = msg; - } - - /** - * Instantiates a UsageException using an explicit argument specification. - * - * @param prog the name of the command - * @param description short description of the tool to display in - * the usage line - * @param argspec the string describing the arguments accepted - * @param msg a final error/exit message - * - * @see - * chapter 12.01 of the POSIX specification, on utility argument - * syntax conventions - * - */ - public UsageException( - String prog, - String description, - String argspec, - String msg) { - super(msg); - this.prog = prog; - this.description = description; - this.argspec = argspec; - this.msg = msg; - } - - /** - * Prints a helpful message about command line usage of the utility. - */ - public void printUsageLine() { - if (msg != null){ - System.err.printf("%s\n", msg); - } - if (argspec != null) { - System.err.printf("usage: %s %s\n", prog, argspec); - } - if (description != null) { - System.err.printf("%s\n", description); - } - if (parser != null) { - try { - System.err.printf("Command line arguments for %s:\n", prog); - parser.printHelpOn(System.err); - } catch (IOException e) { - e.printStackTrace(); - } - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/ValidationUtils.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/ValidationUtils.java deleted file mode 100644 index 8a9bd1a9b4f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/ValidationUtils.java +++ /dev/null @@ -1,81 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.IOException; - -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.CancerStudy; - - -/** - * Utility validation methods shared by different importers. - * - * @author pieterlukasse - */ -public class ValidationUtils { - - /** - * Utility method to validate the chromosome. Should be 1-22 or X, Y. - * It also makes a small exception for 23 and 24: 23 is interpreted as X and 24 is interpreted as Y - * - * @param chrom - * - * @throws IllegalArgumentException when chromosome is invalid, or even NumberFormatException - * when not a number and other than X or Y. - */ - public static int validateChromosome(String chrom) { - if (chrom.equalsIgnoreCase("X")) - chrom = "23"; - if (chrom.equalsIgnoreCase("Y")) - chrom = "24"; - int chromNr = Integer.parseInt(chrom); - if (chromNr > 24) { - throw new IllegalArgumentException("Error: Invalid chromosome [" + chrom + "]"); - } - return chromNr; - } - - /** - * Gets internal cancer study id by stable id and throws an - * exception when study is not found. - * - * @param cancerStudy String (e.g. "tcga_gbm") - * @return the cancer study internal id - * @throws IOException - * @throws DaoException when study cannot be found - */ - public static int getInternalStudyId(final String cancerStudyIdentifier) throws IOException, DaoException - { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - - if (cancerStudy == null) { - throw new DaoException("no CancerStudy associated with \"" - + cancerStudyIdentifier + "\" cancer_study_identifier"); - } - - return cancerStudy.getInternalId(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/AbstractDrugInfoImporter.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/AbstractDrugInfoImporter.java deleted file mode 100644 index c5ceb83da76..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/AbstractDrugInfoImporter.java +++ /dev/null @@ -1,51 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts.drug; - -import org.mskcc.cbio.portal.dao.DaoException; - -abstract public class AbstractDrugInfoImporter { - public static String DRUG_INTERACTION_TYPE = "DRUG_TARGET"; - - private DrugDataResource dataResource; - - public DrugDataResource getDataResource() { - return dataResource; - } - - public void setDataResource(DrugDataResource dataResource) { - this.dataResource = dataResource; - } - - abstract public void importData() throws Exception; -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/DrugDataResource.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/DrugDataResource.java deleted file mode 100644 index 469fe7165ec..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/DrugDataResource.java +++ /dev/null @@ -1,81 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts.drug; - -import java.io.IOException; -import java.io.InputStream; -import java.net.URL; - -public class DrugDataResource { - private String name; - private String resourceURL; - private String version; - - public DrugDataResource() { - } - - public DrugDataResource(String name, String resourceURL, String version) { - this.name = name; - this.resourceURL = resourceURL; - this.version = version; - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getResourceURL() { - return resourceURL; - } - - public void setResourceURL(String resourceURL) { - this.resourceURL = resourceURL; - } - - public String getVersion() { - return version; - } - - public void setVersion(String version) { - this.version = version; - } - - public InputStream getResourceAsStream() throws IOException { - URL url = new URL(resourceURL); - return url.openStream(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/ImportPiHelperData.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/ImportPiHelperData.java deleted file mode 100644 index ff162516460..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/ImportPiHelperData.java +++ /dev/null @@ -1,69 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts.drug; - -import org.mskcc.cbio.portal.scripts.drug.internal.PiHelperImporter; - -import java.io.FileInputStream; -import java.text.SimpleDateFormat; -import java.util.Calendar; - -public class ImportPiHelperData { - public static void main(String arg[]) throws Exception { - if(arg.length < 2) { - System.err.println( - "Missing options!\nUsage: " - + ImportPiHelperData.class.getSimpleName() - + " drugs.tsv drugtargets.tsv" - ); - return; - } - - Calendar cal = Calendar.getInstance(); - SimpleDateFormat format = new SimpleDateFormat("yyyy-MM"); - String today = format.format(cal.getTime()); - DrugDataResource pihelper = new DrugDataResource( - "PiHelper", - "https://bitbucket.org/armish/pihelper/downloads/pihelper_data_20121107.zip", - today - ); - - PiHelperImporter piHelperImporter = new PiHelperImporter(pihelper); - piHelperImporter.setDrugInfoFile(new FileInputStream(arg[0].trim())); - piHelperImporter.setDrugTargetsFile(new FileInputStream(arg[1].trim())); - - piHelperImporter.importData(); - - System.out.println("PiHelper import done!"); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/DrugBankResource.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/DrugBankResource.java deleted file mode 100644 index 17e2ed335a7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/DrugBankResource.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts.drug.internal; - -import org.mskcc.cbio.portal.scripts.drug.DrugDataResource; - -import java.io.IOException; -import java.io.InputStream; -import java.util.zip.GZIPInputStream; - -public class DrugBankResource extends DrugDataResource { - @Override - public InputStream getResourceAsStream() throws IOException { - if(getResourceURL().toLowerCase().endsWith("gz")) - return new GZIPInputStream(super.getResourceAsStream()); - else - return super.getResourceAsStream(); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/PiHelperImporter.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/PiHelperImporter.java deleted file mode 100644 index 6864edcae35..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/PiHelperImporter.java +++ /dev/null @@ -1,190 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts.drug.internal; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Drug; -import org.mskcc.cbio.portal.scripts.drug.AbstractDrugInfoImporter; -import org.mskcc.cbio.portal.scripts.drug.DrugDataResource; - -import java.io.InputStream; -import java.util.HashMap; -import java.util.List; -import java.util.Scanner; - -public class PiHelperImporter extends AbstractDrugInfoImporter { - private static final String separator = "\t"; - - private InputStream drugInfoFile; - private InputStream drugTargetsFile; - private HashMap nameToDrugMap = new HashMap(); - - // Ugly solution, but makes debugging much easier - private final Drug DRUG_SKIP = new Drug(); - - public PiHelperImporter(DrugDataResource dataResource) throws DaoException { - super.setDataResource(dataResource); - } - - public InputStream getDrugInfoFile() { - return drugInfoFile; - } - - public void setDrugInfoFile(InputStream drugInfoFile) { - this.drugInfoFile = drugInfoFile; - } - - public InputStream getDrugTargetsFile() { - return drugTargetsFile; - } - - public void setDrugTargetsFile(InputStream drugTargetsFile) { - this.drugTargetsFile = drugTargetsFile; - } - - @Override - public void importData() throws Exception { - // These are necessary files, hence the check below - if(getDrugInfoFile() == null || getDrugTargetsFile() == null) { - throw new IllegalArgumentException("Please provide drug and drug targets before you stat importing."); - } - MySQLbulkLoader.bulkLoadOff(); - importDrugs(); - importDrugTargets(); - } - - private void importDrugTargets() throws Exception { - Scanner scanner = new Scanner(getDrugTargetsFile()); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - int lineNo = 0, saved = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - if(line.startsWith("#")) continue; - if((++lineNo) == 1) continue; - - String[] tokens = line.split(separator, -1); - assert tokens.length == 5; - if(tokens.length < 5) continue; - /* - 0 - PiHelperId - 1 - Symbol - 2 - Drug - 3 - DataSources - 4 - References - */ - - String geneSymbol = tokens[1].trim(); - String drugName = tokens[2].trim(); - String datasources = tokens[3].trim(); - String refs = tokens[4].trim(); - - Drug drug = nameToDrugMap.get(drugName); - - if(drug==null || drug == DRUG_SKIP) - continue; - - CanonicalGene gene = daoGeneOptimized.getNonAmbiguousGene(geneSymbol); - } - - scanner.close(); - - System.out.println("Number of drug-targets imported: " + saved); - } - - private void importDrugs() throws Exception { - nameToDrugMap.clear(); - - Scanner scanner = new Scanner(getDrugInfoFile()); - int lineNo = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - if(line.startsWith("#")) continue; - if((++lineNo) == 1) continue; - - try { - importDrug(line); - } catch (Exception e) { - System.err.println("Failed to load drug "+line); - e.printStackTrace(); - } - - } - - scanner.close(); - - System.out.println("Number of drugs imported: " + nameToDrugMap.keySet().size()); - } - - private void importDrug(String line) throws DaoException { - String[] t = line.split(separator, -1); - assert t.length == 12; - /* - 0 PiHelper_Drug_ID - 1 Drug_Name - 2 Drug_Synonyms - 3 Description - 4 Number_of_Targets - 5 ATC_Codes - 6 isFdaApproved - 7 isCancerDrug - 8 isNutraceutical - 9 Number_Of_Clinical_Trials - 10 DataSources - 11 References - */ - - Drug drug = new Drug( - t[0].trim(), // id - t[1].trim(), // name - t[3].trim().replace("\"", ""), // desc - t[2].trim(), // synonyms - t[11].trim(), // refs - t[10].trim(), // resource - t[5].trim(), // atc - Boolean.parseBoolean(t[6].trim()), // fda approval - Boolean.parseBoolean(t[7].trim()), // is cancer drug - Boolean.parseBoolean(t[8].trim()), // is Nutraceutical - Integer.parseInt(t[9]) - ); - - if(drug.isNutraceuitical()) { // We don't want these drugs within the database - nameToDrugMap.put(drug.getName(), DRUG_SKIP); - } else { - nameToDrugMap.put(drug.getName(), drug); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/PiHelperResource.java b/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/PiHelperResource.java deleted file mode 100644 index 23b8a30cb1b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/scripts/drug/internal/PiHelperResource.java +++ /dev/null @@ -1,38 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts.drug.internal; - -import org.mskcc.cbio.portal.scripts.drug.DrugDataResource; - -public class PiHelperResource extends DrugDataResource { -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/BioGeneServlet.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/BioGeneServlet.java deleted file mode 100644 index 4b9dc3dadb2..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/BioGeneServlet.java +++ /dev/null @@ -1,117 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStreamReader; -import java.io.PrintWriter; -import java.net.URL; -import java.net.URLConnection; - -/** - * Servlet class to request BioGene information from BioGene web service. - * - * @author Selcuk Onur Sumer - */ -public class BioGeneServlet extends HttpServlet -{ - public final static String BIO_GENE_SERVICE = "https://biogene.herokuapp.com/retrieve.do"; - public final static String NA = "NA"; - - private static String makeRequest(String query, - String org, - String format) throws IOException - { - StringBuilder urlBuilder = new StringBuilder(); - - urlBuilder.append(BIO_GENE_SERVICE); - urlBuilder.append("?query=").append(query); - urlBuilder.append("&org=").append(org); - urlBuilder.append("&format=").append(format); - - String url = urlBuilder.toString(); - - URL bioGene = new URL(url); - URLConnection bioGeneCxn = bioGene.openConnection(); - BufferedReader in = new BufferedReader( - new InputStreamReader(bioGeneCxn.getInputStream())); - - String line; - StringBuilder sb = new StringBuilder(); - - // Read all - while((line = in.readLine()) != null) - { - sb.append(line); - } - - in.close(); - - return sb.toString(); - } - - - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse)throws ServletException, IOException - { - doPost(httpServletRequest, httpServletResponse); - } - - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse)throws ServletException, IOException - { - PrintWriter out = httpServletResponse.getWriter(); - - String query = httpServletRequest.getParameter("query"); - String org = httpServletRequest.getParameter("org"); - String format = httpServletRequest.getParameter("format"); - - String xml = makeRequest(query, org, format); - - if (format.equalsIgnoreCase("json")) - { - httpServletResponse.setContentType("application/json"); - } - else - { - httpServletResponse.setContentType("text/xml;charset=UTF-8"); - } - - out.write(xml); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/CalcCoExp.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/CalcCoExp.java deleted file mode 100644 index 547fa657e08..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/CalcCoExp.java +++ /dev/null @@ -1,115 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import java.util.*; -import java.lang.Math; - -import org.json.simple.JSONObject; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import org.apache.commons.math3.stat.correlation.PearsonsCorrelation; -import org.apache.commons.math3.stat.correlation.SpearmansCorrelation; -import org.mskcc.cbio.portal.util.CoExpUtil; -import org.mskcc.cbio.portal.util.XssRequestWrapper; - -/** - * Calculate co-expression scores for two incoming arrays - * - * @param : geneXarr -- String of profile data for the x axis gene - * @param : geneYarr -- String of profile data for the y axis gene - * @return : Pearson and spearman co-expression scores - * - */ -public class CalcCoExp extends HttpServlet { - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles the HTTP POST Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - - String geneXArr = httpServletRequest.getParameter("gene_x"); - String geneYArr = httpServletRequest.getParameter("gene_y"); - - String[] _geneXstrArr = geneXArr.split("\\s+"); - String[] _geneYstrArr = geneYArr.split("\\s+"); - - //Convert strings to doubles - double[] _geneXvalArr = new double[_geneXstrArr.length]; - double[] _geneYvalArr = new double[_geneYstrArr.length]; - for (int i = 0; i < _geneXstrArr.length; i++) { - double _valX = Double.parseDouble(_geneXstrArr[i]); - double _valY = Double.parseDouble(_geneYstrArr[i]); - _geneXvalArr[i] = _valX; - _geneYvalArr[i] = _valY; - } - - //Calculate Scores - PearsonsCorrelation pearsonsCorrelation = new PearsonsCorrelation(); - SpearmansCorrelation spearmansCorrelation = new SpearmansCorrelation(); - double pearson = pearsonsCorrelation.correlation(_geneXvalArr, _geneYvalArr); - double spearman = spearmansCorrelation.correlation(_geneXvalArr, _geneYvalArr); - - httpServletResponse.setContentType("text/html"); - PrintWriter out = httpServletResponse.getWriter(); - JSONValue.writeJSONString(pearson + " " + spearman, out); - } -} - - - diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/CalcFisherExactTest.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/CalcFisherExactTest.java deleted file mode 100644 index 16073e48ff0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/CalcFisherExactTest.java +++ /dev/null @@ -1,102 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import java.util.*; - -import org.json.simple.JSONValue; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.mskcc.cbio.portal.stats.FisherExact; - -/** - * Calculate the cumulative (two-tail) p-value out of fisher exact test - * - * @param a a, b, c, d are the four cells in a 2x2 matrix - * @param b - * @param c - * @param d - * @return two-tailed P-value (right or left, whichever is smallest) - * - */ -public class CalcFisherExactTest extends HttpServlet { - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles the HTTP POST Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - - String[] dataSets = httpServletRequest.getParameter("params").split(":"); - String result = ""; - for (String dataSet : dataSets) { - if (!dataSet.isEmpty()) { - int a = Integer.parseInt(dataSet.split(" ")[0]); - int b = Integer.parseInt(dataSet.split(" ")[1]); - int c = Integer.parseInt(dataSet.split(" ")[2]); - int d = Integer.parseInt(dataSet.split(" ")[3]); - FisherExact fisher = new FisherExact(a + b + c + d); - double pValue = fisher.getTwoTailedP(a, b, c, d); - result = result.concat(String.valueOf(pValue) + " "); - } - } - result = result.replaceAll("\\s+$", ""); - - httpServletResponse.setContentType("text/html"); - PrintWriter out = httpServletResponse.getWriter(); - JSONValue.writeJSONString(result, out); - } -} - - - diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/CheckDarwinAccessServlet.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/CheckDarwinAccessServlet.java deleted file mode 100644 index 9c7ace9c311..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/CheckDarwinAccessServlet.java +++ /dev/null @@ -1,365 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.util.GlobalProperties; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import org.springframework.http.*; -import org.springframework.web.client.RestTemplate; -import org.springframework.util.LinkedMultiValueMap; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.web.context.support.SpringBeanAutowiringSupport; - -import org.apache.commons.cli.*; -import org.apache.commons.lang3.builder.ToStringBuilder; - -import java.io.*; -import java.util.*; -import javax.annotation.Generated; -import com.fasterxml.jackson.annotation.*; -import java.util.regex.Pattern; - -import javax.servlet.http.*; -import javax.servlet.ServletConfig; -import javax.servlet.ServletException; - -/** - * - * @author ochoaa - */ -@JsonInclude(JsonInclude.Include.NON_NULL) -@Generated("org.jsonschema2pojo") -@JsonPropertyOrder({ -"darwinAuthResponse", -"p_userName", -"p_dmp_pid", -"deidentification_id" -}) -public class CheckDarwinAccessServlet extends HttpServlet { - private static Logger logger = LoggerFactory.getLogger(CheckDarwinAccessServlet.class); - private static final String DDP_INFO_ENDPOINT = "/info"; - - @Override - public void init(ServletConfig config) throws ServletException { - super.init(config); - SpringBeanAutowiringSupport.processInjectionBasedOnServletContext(this, - config.getServletContext()); - } - - public static class CheckDarwinAccess { - private static String darwinAuthUrl = GlobalProperties.getDarwinAuthCheckUrl(); - private static String ddpResponseUrl = GlobalProperties.getDdpResponseUrl(); - private static String cisUser = GlobalProperties.getCisUser(); - public static Pattern sampleIdRegex = Pattern.compile(GlobalProperties.getDarwinRegex()); - - public static String checkAccess(HttpServletRequest request) { - if (!existsDarwinProperties()) return ""; - // if sample id does not match regex or username matches cis username then return empty string - String userName = GlobalProperties.getAuthenticatedDisplayName().split("@")[0]; - String darwinResponse = ""; - try { - String[] sampleIds = request.getParameter(PatientView.SAMPLE_ID).split(","); - if (sampleIdRegex.matcher(sampleIds[0]).find() && !cisUser.equals(userName)) { - String patientId = request.getParameter(PatientView.PATIENT_ID); - darwinResponse = getResponse(userName, patientId); - } - } - catch (NullPointerException ex) {} - - return darwinResponse; - } - - public static String getResponse(String userName, String patientId){ - RestTemplate restTemplate = new RestTemplate(); - HttpEntity> requestEntity = getRequestEntity(userName, patientId); - ResponseEntity responseEntity = restTemplate.exchange(darwinAuthUrl, HttpMethod.POST, requestEntity, DarwinAccess.class); - String darwinResponse = responseEntity.getBody().getDarwinAuthResponse(); - String deidentificationId = responseEntity.getBody().getDeidentification_Id(); - if (!darwinResponse.equals("valid")) { - return ""; - } - if (deidentificationId.isEmpty()) { - return ""; - } - // construct URL - return ddpResponseUrl + deidentificationId + DDP_INFO_ENDPOINT; - } - - private static HttpEntity> getRequestEntity(String userName, String patientId) { - LinkedMultiValueMap map = new LinkedMultiValueMap<>(); - map.add("p_userName", userName); - map.add("p_dmp_pid", patientId); - HttpHeaders headers = new HttpHeaders(); - headers.setContentType(MediaType.APPLICATION_FORM_URLENCODED); - return new HttpEntity>(map, headers); - } - - public static boolean existsDarwinProperties() { - return (!darwinAuthUrl.isEmpty() && !ddpResponseUrl.isEmpty() && !cisUser.isEmpty() && !GlobalProperties.getDarwinRegex().isEmpty()); - } - } - - public static class DarwinAccess { - /** - * (Required) - **/ - @JsonProperty("darwinAuthResponse") - private String darwinAuthResponse; - /** - * (Required) - **/ - @JsonProperty("p_userName") - private String p_userName; - /** - * (Required) - **/ - @JsonProperty("p_dmp_pid") - private String p_dmp_pid; - /** - * (Required) - **/ - @JsonProperty("deidentification_id") - private String deidentification_id; - - @JsonIgnore - private Map additionalProperties = new HashMap(); - - /** - * No args constructor for use in serialization - **/ - public DarwinAccess() {} - - /** - * @param darwinAuthResponse - * @param p_userName - * @param p_dmp_pid - * @param deidentification_id - **/ - public DarwinAccess(String darwinAuthResponse, String p_userName, String p_dmp_pid, String deidentification_id) { - this.darwinAuthResponse = darwinAuthResponse; - this.p_userName = p_userName; - this.p_dmp_pid = p_dmp_pid; - this.deidentification_id = deidentification_id; - } - - /** - * (Required) - * @return - * The darwinAuthResponse - **/ - @JsonProperty("darwinAuthResponse") - public String getDarwinAuthResponse() { - return darwinAuthResponse; - } - - /** - * (Required) - * @param darwinAuthResponse - * The Darwin authorization response - **/ - @JsonProperty("darwinAuthResponse") - public void setDarwinAuthResponse(String darwinAuthResponse) { - this.darwinAuthResponse = darwinAuthResponse; - } - - public DarwinAccess withDarwinAuthResponse(String darwinAuthResponse) { - this.darwinAuthResponse = darwinAuthResponse; - return this; - } - - /** - * (Required) - * @return - * The p_userName - **/ - @JsonProperty("p_userName") - public String getP_UserName() { - return p_userName; - } - - /** - * (Required) - * @param p_userName - * The p_userName - **/ - @JsonProperty("p_userName") - public void setP_UserName(String p_userName) { - this.p_userName = p_userName; - } - - public DarwinAccess withP_UserName(String p_userName) { - this.p_userName = p_userName; - return this; - } - - /** - * (Required) - * @return - * The p_dmp_pid - **/ - @JsonProperty("p_dmp_pid") - public String getP_Dmp_Pid() { - return p_dmp_pid; - } - - /** - * (Required) - * @param p_dmp_pid - * The p_dmp_pid - **/ - @JsonProperty("p_dmp_pid") - public void setP_Dmp_Pid(String p_dmp_pid) { - this.p_dmp_pid = p_dmp_pid; - } - - /** - * (Required) - * @return - * The deidentification_id - **/ - @JsonProperty("deidentification_id") - public String getDeidentification_Id() { - return deidentification_id; - } - - /** - * (Required) - * @param deidentification_id - * The deidentification_id - **/ - @JsonProperty("deidentification_id") - public void setDeidentification_Id(String deidentification_id) { - this.deidentification_id = deidentification_id; - } - - public DarwinAccess withP_Dmp_Pid(String p_dmp_pid) { - this.p_dmp_pid = p_dmp_pid; - return this; - } - - @Override - public String toString() { - return ToStringBuilder.reflectionToString(this); - } - - @JsonAnyGetter - public Map getAdditionalProperties() { - return this.additionalProperties; - } - - @JsonAnySetter - public void setAdditionalProperty(String name, Object value) { - this.additionalProperties.put(name, value); - } - - public DarwinAccess withAdditionalProperty(String name, Object value) { - this.additionalProperties.put(name, value); - return this; - } - } - - private static Options getOptions(String[] args) { - Options gnuOptions = new Options(); - gnuOptions.addOption("h", "help", false, "shows this help document and quits.") - .addOption("u", "user_name", true, "Username") - .addOption("p", "patient_id", true, "Patient ID") - .addOption("s", "sample_id", true, "Sample ID"); - - return gnuOptions; - } - private static void help(Options gnuOptions, int exitStatus) { - HelpFormatter helpFormatter = new HelpFormatter(); - helpFormatter.printHelp("CheckDarwinAccess", gnuOptions); - System.exit(exitStatus); - } - - /** - * Processes requests for both HTTP GET and POST methods. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - protected void processRequest(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - - String darwinResponse = CheckDarwinAccess.checkAccess(request); - - response.setContentType("text/plain"); - PrintWriter out = response.getWriter(); - try { - out.write(darwinResponse); - } finally { - out.close(); - } - } - - // - /** - * Handles the HTTP GET method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Handles the HTTP POST method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Returns a short description of the servlet. - * @return a String containing servlet description - */ - @Override - public String getServletInfo() { - return "Short description"; - }// -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/CheckGeneSymbolJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/CheckGeneSymbolJSON.java deleted file mode 100644 index a5d741f1442..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/CheckGeneSymbolJSON.java +++ /dev/null @@ -1,120 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.json.simple.JSONArray; -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.XssRequestWrapper; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import java.util.HashMap; -import java.util.Map; - -/** - * A JSON servlet for checking gene symbols - * Is it valid, if so is it an alias? - * Returns valid gene symbols from the DB. - * - */ -public class CheckGeneSymbolJSON extends HttpServlet { - public static final String GENES = "genes"; - - /** - * Initializes the servlet. - */ - public void init() throws ServletException { - super.init(); - } - - protected void doGet(HttpServletRequest request, - HttpServletResponse response) throws ServletException, IOException - { - this.doPost(request, response); - } - - - /** - * Handles HTTP GET Request. - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, - IOException { - new HashMap(); - JSONArray geneArray = new JSONArray(); - String genes = httpServletRequest.getParameter(GENES); - - // we need the raw gene list - if (httpServletRequest instanceof XssRequestWrapper) - { - genes = ((XssRequestWrapper)httpServletRequest).getRawParameter(GENES); - } - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - // Use the OQL Parser to Extract the Gene Symbols - String[] geneList; - if (genes.length() > 0) { - geneList = genes.split(","); - } else { - geneList = new String[0]; - } - - for(String symbol: geneList) { - Map map = new HashMap(); - JSONArray symbols = new JSONArray(); - for(CanonicalGene gene: daoGene.guessGene(symbol)) { - symbols.add(gene.getStandardSymbol()); - } - map.put("symbols", symbols); - map.put("name", symbol); - - geneArray.add(map); - } - - httpServletResponse.setContentType("application/json"); - PrintWriter out = httpServletResponse.getWriter(); - try { - JSONValue.writeJSONString(geneArray, out); - } finally { - out.close(); - } - - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalAttributesServlet.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalAttributesServlet.java deleted file mode 100644 index 42d857bb373..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalAttributesServlet.java +++ /dev/null @@ -1,113 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.json.simple.JSONArray; -import org.mskcc.cbio.portal.dao.DaoClinicalAttributeMeta; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.util.WebserviceParserUtils; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import java.util.List; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; - -public class ClinicalAttributesServlet extends HttpServlet { - private static Logger log = LoggerFactory.getLogger(ClinicalAttributesServlet.class); - - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Initializes the servlet. - * - * @throws ServletException - */ - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Takes any sort of patient list parameter in the request - * - * Returns a list of clinical attributes in json format - * - * @param request - * @param response - * @throws ServletException - */ - public void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException { - try { - JSONArray toWrite = new JSONArray(); - response.setContentType("text/json"); - - String cancerStudyId = WebserviceParserUtils.getCancerStudyId(request); - - if(cancerStudyId != null) { - CancerStudy cancerStudy = DaoCancerStudy - .getCancerStudyByStableId(cancerStudyId); - if(cancerStudy != null && accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - List clinicalAttributes = DaoClinicalAttributeMeta.getDataByStudy(cancerStudy.getInternalId()); - - - for (ClinicalAttribute attr : clinicalAttributes) { - toWrite.add(ClinicalJSON.reflectToMap(attr)); - } - } - } - - - PrintWriter out = response.getWriter(); - JSONArray.writeJSONString(toWrite, out); - } catch (DaoException e) { - throw new ServletException(e); - } catch (IOException e) { - throw new ServletException(e); - } - } - - public void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException { - doGet(request, response); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalFreeFormJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalFreeFormJSON.java deleted file mode 100644 index 79e2451b3a0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalFreeFormJSON.java +++ /dev/null @@ -1,187 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.IOException; -import java.io.PrintWriter; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.json.simple.JSONArray; -import org.json.simple.JSONObject; -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoClinicalData; -import org.mskcc.cbio.portal.dao.DaoClinicalAttributeMeta; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.ClinicalData; -import org.mskcc.cbio.portal.model.ClinicalParameterMap; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.CategoryLabelReader; -import org.mskcc.cbio.portal.util.SpringUtil; - -public class ClinicalFreeFormJSON extends HttpServlet -{ - public static final String STUDY_ID = "studyId"; - - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Initializes the servlet. - */ - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Handles HTTP GET Request. - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse)throws ServletException, - IOException { - - String studyId = httpServletRequest.getParameter(STUDY_ID); - - try - { - // final object to be send as JSON - JSONObject jsonObject = new JSONObject(); - - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(studyId); - - // check if cancerStudy exists - if (cancerStudy == null || accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() != 1) - { - // just create empty collections if cancers study cannot be found - jsonObject.put("clinicalCaseSet", new JSONArray()); - jsonObject.put("categoryMap", new HashMap()); - jsonObject.put("freeFormData", new JSONArray()); - } - else - { - HashSet clinicalPatientSet = - DaoClinicalData.getAllPatients(cancerStudy.getInternalId()); - - HashSet paramSet = - DaoClinicalData.getDistinctParameters(cancerStudy.getInternalId()); - - List freeFormData = - DaoClinicalData.getDataByCancerStudy(cancerStudy.getInternalId()); - - // map of pairs - Map categoryMap = new HashMap(); - - // array of clinical case IDs - JSONArray patientIds = new JSONArray(); - - // add the clinical patient set - for (String patientId : clinicalPatientSet) - { - patientIds.add(patientId); - } - - jsonObject.put("clinicalCaseSet", patientIds); - - // get all distinct categories - List paramMaps = DaoClinicalData.getDataSlice(cancerStudy.getInternalId(), paramSet); - for (ClinicalParameterMap paramMap : paramMaps) { - Set distinctCategorySet = paramMap.getDistinctCategories(); - JSONArray distinctCategories = new JSONArray(); - - for (String category : distinctCategorySet) - { - if (category.trim().length() > 0) - { - distinctCategories.add(category); - } - } - - categoryMap.put(CategoryLabelReader.safeCategoryName(paramMap.getName()), - distinctCategories); - } - - // add the category map - jsonObject.put("categoryMap", categoryMap); - - // array of free form data - JSONArray freeFormArray = new JSONArray(); - - // get all clinical free form data for the specified cancer study - for (ClinicalData data : freeFormData) - { - JSONObject freeFormObject = new JSONObject(); - - //freeFormObject.put("cancerStudyId", data.getCancerStudyId()); - freeFormObject.put("caseId", data.getStableId()); - freeFormObject.put("paramName", CategoryLabelReader.safeCategoryName(data.getAttrId())); - freeFormObject.put("paramValue", data.getAttrVal()); - - freeFormArray.add(freeFormObject); - } - - // add the free form data array - jsonObject.put("freeFormData", freeFormArray); - - // add the map for human readable category names - jsonObject.put("categoryLabelMap", DaoClinicalAttributeMeta.getAllMap()); - } - - httpServletResponse.setContentType("application/json"); - PrintWriter out = httpServletResponse.getWriter(); - - try - { - JSONValue.writeJSONString(jsonObject, out); - } - finally - { - out.close(); - } - } - catch (DaoException e) - { - throw new ServletException(e); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalJSON.java deleted file mode 100644 index 926b0cb4581..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalJSON.java +++ /dev/null @@ -1,174 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.json.simple.JSONArray; -import org.json.simple.JSONObject; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoClinicalData; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.ClinicalData; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.mskcc.cbio.portal.model.ClinicalData; -import org.owasp.validator.html.PolicyException; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.*; - -public class ClinicalJSON extends HttpServlet { - - // our logger - private static Logger LOG = LoggerFactory.getLogger(ClinicalJSON.class); - - // class which process access control to cancer studies - private AccessControl accessControl; - - public static final String SAMPLES_DELIMITER = " "; - public static final String ALL = "all"; - - /** - * Initializes the servlet. - * - * @throws ServletException - */ - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * take a clinical object and convert it to a map - * - * @param clinical - * @return - */ - public JSONObject reflectToMap(ClinicalData clinical) { - JSONObject object = new JSONObject(); - object.put("attr_id", clinical.getAttrId()); - object.put("attr_val", clinical.getAttrVal()); - //TODO: at some point we may want to incorporate the cancer_study_id -// object.put("cancer_study_id", Integer.toString(clinical.getCancerStudyId())); - object.put("case_id", clinical.getStableId()); - return object; - } - - public static Map reflectToMap(ClinicalAttribute clinicalAttribute) { - JSONObject object = new JSONObject(); - object.put("attr_id", clinicalAttribute.getAttrId()); - object.put("datatype", clinicalAttribute.getDatatype()); - object.put("description", clinicalAttribute.getDescription()); - object.put("display_name", clinicalAttribute.getDisplayName()); - return object; - } - - public JSONArray clinicals2JSONArray(List clincials) { - JSONArray toReturn = new JSONArray(); - for (ClinicalData c : clincials) { - toReturn.add(reflectToMap(c)); - } - return toReturn; - } - - /** - * Using post request to increase URL length, actually this should not be a POST request - * - * @param request - * @param response - * @throws ServletException - * @throws IOException - */ - @Override - public void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - - String query = request.getParameter("q"); - String type = request.getParameter("t"); - - String samples = request.getParameter("samples"); - String cancerStudyId = request.getParameter("cancer_study_id"); - - List clinicals; - JSONArray maps = null; - - try { - if(cancerStudyId != null) { - CancerStudy cancerStudy = DaoCancerStudy - .getCancerStudyByStableId(cancerStudyId); - if (cancerStudy != null && accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - if (samples == null || samples.equals(ALL) ) { - clinicals = DaoClinicalData.getData(cancerStudyId); - maps = clinicals2JSONArray(clinicals); - } else { - clinicals = DaoClinicalData.getData(cancerStudyId, - Arrays.asList(samples.trim().split(SAMPLES_DELIMITER))); - maps = clinicals2JSONArray(clinicals); - } - for (ClinicalData c : clinicals) { - maps.add(reflectToMap(c)); - } - } - } - } catch (DaoException e) { - throw new ServletException(e); - } - - response.setContentType("application/json"); - PrintWriter out = response.getWriter(); - JSONArray.writeJSONString(maps, out); - } - - /** - * reroute get to post - * @param request - * @param response - * @throws ServletException - * @throws IOException - */ - @Override - public void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - doPost(request, response); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalTimelineData.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalTimelineData.java deleted file mode 100644 index 04d7e9e2129..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/ClinicalTimelineData.java +++ /dev/null @@ -1,147 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.IOException; -import java.io.PrintWriter; -import java.util.ArrayList; -import java.util.Collection; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import com.fasterxml.jackson.databind.ObjectMapper; - -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoClinicalEvent; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoPatient; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.ClinicalEvent; -import org.mskcc.cbio.portal.model.Patient; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.SpringUtil; - -/** - * - * @author jgao - */ -public class ClinicalTimelineData extends HttpServlet { - - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Initializes the servlet. - */ - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Processes requests for both HTTP GET and POST methods. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - protected void processRequest(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException - { - Collection clinicalEvents = new ArrayList(); - - try { - //Set types = new HashSet(Arrays.asList(request.getParameter("type").split("[ ,]+"))); - String cancerStudyId = request.getParameter("cancer_study_id"); - if(cancerStudyId != null) { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); - if (cancerStudy != null && accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - String patientId = request.getParameter("patient_id"); - - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), patientId); - clinicalEvents = DaoClinicalEvent.getClinicalEvent(patient.getInternalId()); - } - } - - } - catch (DaoException ex) { - throw new ServletException(ex); - } - - response.setContentType("application/json"); - PrintWriter out = response.getWriter(); - ObjectMapper mapper = new ObjectMapper(); - try { - mapper.writeValue(out, clinicalEvents); - } finally { - out.close(); - } - } - - // - /** - * Handles the HTTP GET method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Handles the HTTP POST method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Returns a short description of the servlet. - * @return a String containing servlet description - */ - @Override - public String getServletInfo() { - return "Short description"; - }// -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/CnaJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/CnaJSON.java deleted file mode 100644 index c8afda00f96..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/CnaJSON.java +++ /dev/null @@ -1,489 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.cbioportal.model.CNA; - -import java.io.*; -import java.util.*; -import javax.servlet.http.*; - -import com.fasterxml.jackson.databind.ObjectMapper; - -import javax.servlet.ServletConfig; -import javax.servlet.ServletException; - -/** - * - * @author jj - */ -public class CnaJSON extends HttpServlet { - private static Logger logger = LoggerFactory.getLogger(CnaJSON.class); - - public static final String CMD = "cmd"; - public static final String GET_DRUG_CMD = "get_drug"; - public static final String GET_SEGMENT_CMD = "get_segment"; - public static final String GET_CNA_FRACTION_CMD = "get_cna_fraction"; - public static final String CNA_EVENT_ID = "cna_id"; - public static final String CBIO_GENES_FILTER = "cbio_genes_filter";//Only get cna events from Cbio Cancer genes - private static final double FRACTION_GENOME_ALTERED_CUTOFF = 0.2; - - // class which process access control to cancer studies - private AccessControl accessControl; - - @Override - public void init(ServletConfig config) throws ServletException { - super.init(config); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Processes requests for both HTTP GET and POST methods. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - protected void processRequest(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - String cmd = request.getParameter(CMD); - if (cmd!=null) { - if (cmd.equalsIgnoreCase(GET_SEGMENT_CMD)) { - processGetSegmentsRequest(request, response); - return; - } - - if (cmd.equalsIgnoreCase(GET_CNA_FRACTION_CMD)) { - processCnaFractionsRequest(request, response); - return; - } - } - - processGetCnaRequest(request, response); - } - - private void processGetCnaRequest(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - String[] sampleIds = null; - String cnaProfileId = request.getParameter(PatientView.CNA_PROFILE); - String mrnaProfileId = request.getParameter(PatientView.MRNA_PROFILE); - String drugType = request.getParameter(PatientView.DRUG_TYPE); - Boolean filterByCbioGene = Boolean.parseBoolean(request.getParameter(CBIO_GENES_FILTER)); - boolean fdaOnly = false; - boolean cancerDrug = true; - if (drugType!=null && drugType.equalsIgnoreCase(PatientView.DRUG_TYPE_FDA_ONLY)) { - fdaOnly = true; - cancerDrug = false; - } - if(request.getParameterMap().containsKey(PatientView.SAMPLE_ID)) { - sampleIds = request.getParameter(PatientView.SAMPLE_ID).split(" +"); - } - - GeneticProfile cnaProfile; - CancerStudy cancerStudy = null; - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - List cnaEvents = Collections.emptyList(); - Map> drugs = Collections.emptyMap(); - Map contextMap = Collections.emptyMap(); - Map> mrnaContext = Collections.emptyMap(); - - try { - if(cnaProfileId != null) { - // Get the Genetic Profile - cnaProfile = - DaoGeneticProfile.getGeneticProfileByStableId(cnaProfileId); - if(cnaProfile != null) { - cancerStudy = DaoCancerStudy - .getCancerStudyByInternalId(cnaProfile.getCancerStudyId()); - if (accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - List internalSampleIds = new ArrayList<>(); - if(sampleIds == null){ - internalSampleIds = InternalIdUtil.getInternalNonNormalSampleIds(cancerStudy.getInternalId()); - }else{ - internalSampleIds = InternalIdUtil.getInternalSampleIds(cancerStudy.getInternalId(), Arrays.asList(sampleIds)); - } - cnaEvents = DaoCnaEvent.getCnaEvents(internalSampleIds, null, cnaProfile.getGeneticProfileId(), Arrays.asList((short)-2,(short)2)); - if (!cnaEvents.isEmpty()) { - String concatEventIds = getConcatEventIds(cnaEvents); - int profileId = cnaProfile.getGeneticProfileId(); -// drugs = getDrugs(cnaEvents, fdaOnly, cancerDrug); - contextMap = DaoCnaEvent.countSamplesWithCnaEvents(concatEventIds, profileId); - if (mrnaProfileId!=null && sampleIds.length==1) { - mrnaContext = getMrnaContext(internalSampleIds.get(0), cnaEvents, mrnaProfileId); - } - } - } - } - } - - } catch (DaoException ex) { - throw new ServletException(ex); - } - - Map data = initMap(); - Map mapEventIndex = new HashMap(); - for (CnaEvent cnaEvent : cnaEvents) { - Set drug = Collections.emptySet(); - try { - drug = drugs.get(cnaEvent.getEntrezGeneId()); - } catch (Exception e) { - logger.error(e.getMessage()); - } - exportCnaEvent(data, mapEventIndex, cnaEvent, cancerStudy, drug, - contextMap.get(cnaEvent.getEventId()), - mrnaContext.get(cnaEvent.getEntrezGeneId()), - daoGeneOptimized); - } - - response.setContentType("application/json"); - PrintWriter out = response.getWriter(); - ObjectMapper mapper = new ObjectMapper(); - try { - out.write(mapper.writeValueAsString(data)); - } finally { - out.close(); - } - } - - private void processGetSegmentsRequest(HttpServletRequest request, - HttpServletResponse response) - throws ServletException, IOException { - - String[] sampleIds = request.getParameter(PatientView.SAMPLE_ID).split(" +"); - String cancerStudyId = request.getParameter(QueryBuilder.CANCER_STUDY_ID); - - List segs = Collections.emptyList(); - - List internalSampleIds = null; - - try { - if(cancerStudyId != null) { - CancerStudy cancerStudy = DaoCancerStudy - .getCancerStudyByStableId(cancerStudyId); - if(cancerStudy != null && accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - internalSampleIds = InternalIdUtil.getInternalSampleIds(cancerStudy.getInternalId(), Arrays.asList(sampleIds)); - segs = DaoCopyNumberSegment.getSegmentForSamples(internalSampleIds, cancerStudy.getInternalId()); - } - } - } catch (DaoException ex) { - throw new ServletException(ex); - } - - Map map = new HashMap(); - for (Integer sampleId : internalSampleIds) { - String stableId = DaoSample.getSampleById(sampleId).getStableId(); - map.put(stableId, new ArrayList()); - } - - for (CopyNumberSegment seg : segs) { - String stableId = DaoSample.getSampleById(seg.getSampleId()).getStableId(); - exportCopyNumberSegment(map.get(stableId), seg); - } - - response.setContentType("application/json"); - - PrintWriter out = response.getWriter(); - ObjectMapper mapper = new ObjectMapper(); - try { - out.write(mapper.writeValueAsString(map)); - } finally { - out.close(); - } - } - - private void processCnaFractionsRequest(HttpServletRequest request, - HttpServletResponse response) - throws ServletException, IOException { - String strSampleIds = request.getParameter(QueryBuilder.CASE_IDS); - List sampleIds = null; - String cancerStudyId = request.getParameter(QueryBuilder.CANCER_STUDY_ID); - - Map fraction = Collections.emptyMap(); - - try { - if (cancerStudyId != null) { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); - if (cancerStudy != null - && accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - if (strSampleIds != null) { - List stableSampleIds = Arrays.asList(strSampleIds.split("[ ,]+")); - sampleIds = InternalIdUtil.getInternalNonNormalSampleIds(cancerStudy.getInternalId(), - stableSampleIds); - } else { - sampleIds = InternalIdUtil.getInternalNonNormalSampleIds(cancerStudy.getInternalId()); - } - fraction = DaoCopyNumberSegment.getCopyNumberActeredFraction(sampleIds, cancerStudy.getInternalId(), - FRACTION_GENOME_ALTERED_CUTOFF); - } - } - } catch (DaoException ex) { - throw new ServletException(ex); - } - - response.setContentType("application/json"); - - PrintWriter out = response.getWriter(); - ObjectMapper mapper = new ObjectMapper(); - try { - out.write(mapper.writeValueAsString(replaceInternalSampleIdsWithStableIds(fraction))); - } finally { - out.close(); - } - } - - private Map replaceInternalSampleIdsWithStableIds(Map fraction) - { - Map toReturn = new HashMap(); - for (Integer internalId : fraction.keySet()) { - toReturn.put(DaoSample.getSampleById(internalId).getStableId(), - fraction.get(internalId)); - } - return toReturn; - } - - private String getConcatEventIds(List cnaEvents) { - if (cnaEvents.isEmpty()) { - return ""; - } - - StringBuilder sb = new StringBuilder(); - for (CnaEvent cna : cnaEvents) { - sb.append(cna.getEventId()).append(','); - } - sb.deleteCharAt(sb.length()-1); - return sb.toString(); - } - - - private Map> getMrnaContext(Integer internalSampleId, List cnaEvents, - String mrnaProfileId) throws DaoException { - Map> mapGenePercentile = new HashMap>(); - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - for (CnaEvent cnaEvent : cnaEvents) { - long gene = cnaEvent.getEntrezGeneId(); - if (mapGenePercentile.containsKey(gene)) { - continue; - } - - Map mrnaMap = daoGeneticAlteration.getGeneticAlterationMap( - DaoGeneticProfile.getGeneticProfileByStableId(mrnaProfileId).getGeneticProfileId(), - gene); - double mrnaCase = parseNumber(mrnaMap.get(internalSampleId)); - if (Double.isNaN(mrnaCase)) { - continue; - } - - Map map = new HashMap(); - mapGenePercentile.put(gene, map); - - map.put("zscore", mrnaCase); - - int total = 0, below = 0; - for (String strMrna : mrnaMap.values()) { - double mrna = parseNumber(strMrna); - if (Double.isNaN(mrna)) { - continue; - } - - total++; - if (mrna <= mrnaCase) { - below++; - } - } - - map.put("perc", 100*below/total); - } - - return mapGenePercentile; - } - - private double parseNumber(String mrna) { - try { - return Double.parseDouble(mrna); - } catch (Exception e) { - return Double.NaN; - } - } - - private Map initMap() { - Map map = new HashMap(); - map.put("id", new ArrayList()); - map.put("caseIds", new ArrayList()); - map.put("entrez", new ArrayList()); - map.put("gene", new ArrayList()); - map.put("cytoband", new ArrayList()); - map.put("alter", new ArrayList()); - map.put("mrna", new ArrayList()); - map.put("gistic", new ArrayList()); - map.put("sanger", new ArrayList()); - map.put("cancer-gene", new ArrayList()); - map.put("drug", new ArrayList()); - map.put("altrate", new ArrayList()); - return map; - } - - private void exportCnaEvent(Map data, Map mapMutationEventIndex, - CnaEvent cnaEvent, CancerStudy cancerStudy, Set drugs, Integer context, - Map mrna, DaoGeneOptimized daoGeneOptimized) - throws ServletException { - Long eventId = cnaEvent.getEventId(); - Integer ix = mapMutationEventIndex.get(eventId); - if (ix!=null) { // multiple samples - Sample sample = DaoSample.getSampleById(cnaEvent.getSampleId()); - List.class.cast(data.get("caseIds").get(ix)).add(sample.getStableId()); - return; - } - - mapMutationEventIndex.put(eventId, data.get("id").size()); - - List samples = new ArrayList(); - Sample sample = DaoSample.getSampleById(cnaEvent.getSampleId()); - samples.add(sample.getStableId()); - data.get("caseIds").add(samples); - - data.get("id").add(cnaEvent.getEventId()); - CanonicalGene gene = daoGeneOptimized.getGene(cnaEvent.getEntrezGeneId()); - String symbol = gene.getHugoGeneSymbolAllCaps(); - data.get("gene").add(symbol); - data.get("entrez").add(cnaEvent.getEntrezGeneId()); - data.get("alter").add(cnaEvent.getAlteration().getCode()); - data.get("mrna").add(mrna); - - // TODO: GISTIC - List gistic; - try { - gistic = getGistic(cancerStudy.getInternalId(), - cnaEvent.getGeneSymbol(), cnaEvent.getAlteration()); - } catch (DaoException ex) { - throw new ServletException(ex); - } - data.get("gistic").add(gistic); - - data.get("altrate").add(context); - - - data.get("sanger").add(false); - data.get("cancer-gene").add(false); - - // drug - data.get("drug").add(drugs); - } - - private void exportCopyNumberSegment(List list, CopyNumberSegment seg) - throws ServletException { - List row = new ArrayList(); - row.add(DaoSample.getSampleById(seg.getSampleId()).getStableId()); - row.add(seg.getChr()); - row.add(seg.getStart()); - row.add(seg.getEnd()); - row.add(seg.getNumProbes()); - row.add(seg.getSegMean()); - list.add(row); - } - - private static final Map>> gisticMap // map from cancer study id - = new HashMap>>(); // to map from gene to a list of params - - private static List getGistic(int cancerStudyId, String gene, CNA cna) throws DaoException { - Map> mapGeneGistic; - synchronized(gisticMap) { - mapGeneGistic = gisticMap.get(cancerStudyId); - if (mapGeneGistic == null) { - mapGeneGistic = new HashMap>(); - gisticMap.put(cancerStudyId, mapGeneGistic); - List gistics = DaoGistic.getAllGisticByCancerStudyId(cancerStudyId); - for (Gistic g : gistics) { - List genes = new ArrayList(g.getGenes_in_ROI().size()); - for (CanonicalGene cg : g.getGenes_in_ROI()) { - genes.add(cg.getHugoGeneSymbolAllCaps()); - } - List l = new ArrayList(); - l.add(g.getqValue()); - l.add(genes.size()); - for (String hugo : genes) { - Map mapCC = mapGeneGistic.get(hugo); - if (mapCC==null) { - mapCC = new EnumMap(CNA.class); - mapGeneGistic.put(hugo, mapCC); - } - mapCC.put(cna,l); - } - } - } - } - - Map m = mapGeneGistic.get(gene); - return m==null ? null : m.get(cna); - } - - // - /** - * Handles the HTTP GET method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Handles the HTTP POST method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Returns a short description of the servlet. - * @return a String containing servlet description - */ - @Override - public String getServletInfo() { - return "Short description"; - }// -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/CrossCancerJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/CrossCancerJSON.java deleted file mode 100644 index 26699da1733..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/CrossCancerJSON.java +++ /dev/null @@ -1,312 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import javax.servlet.ServletException; -import javax.servlet.http.*; -import org.apache.commons.lang3.StringUtils; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.web_api.*; -import java.util.*; - -public class CrossCancerJSON extends HttpServlet { - private static Logger logger = LoggerFactory.getLogger(CrossCancerJSON.class); - - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Initializes the servlet. - * - * @throws ServletException Serlvet Init Error. - */ - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - protected void doPost(HttpServletRequest request, HttpServletResponse response) - throws IOException, ServletException - { - doGet(request, response); - } - /** - * Processes requests for both HTTP GET and POST methods. - * @param request servlet request - * @param response servlet response - * @throws javax.servlet.ServletException if a servlet-specific error occurs - * @throws java.io.IOException if an I/O error occurs - */ - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws IOException, ServletException - { - XDebug xdebug = new XDebug(); - xdebug.startTimer(); - - response.setContentType("application/json"); - PrintWriter writer = response.getWriter(); - - try { - List resultsList = new LinkedList(); - - // Get the gene list - String geneList = request.getParameter(QueryBuilder.GENE_LIST); - if (request instanceof XssRequestWrapper) { - geneList = ((XssRequestWrapper)request).getRawParameter(QueryBuilder.GENE_LIST); - } - String cancerStudyIdListString = request.getParameter(QueryBuilder.CANCER_STUDY_LIST); - String[] cancerStudyIdList = cancerStudyIdListString.split(","); - - // Get the priority - Integer dataTypePriority; - try { - dataTypePriority - = Integer.parseInt(request.getParameter(QueryBuilder.DATA_PRIORITY).trim()); - } catch (NumberFormatException e) { - dataTypePriority = 0; - } - - // Cancer All Cancer Studies - List cancerStudiesList = accessControl.getCancerStudies(); - HashMap studyMap = new HashMap<>(); - for (String studyId: cancerStudyIdList) { - studyMap.put(studyId, Boolean.TRUE); - } - for (CancerStudy cancerStudy : cancerStudiesList) { - String cancerStudyId = cancerStudy.getCancerStudyStableId(); - if (!studyMap.containsKey(cancerStudyId)) { - continue; - } - if (cancerStudyId.equalsIgnoreCase("all")) - continue; - - Map cancerMap = new LinkedHashMap(); - cancerMap.put("studyId", cancerStudyId); - cancerMap.put("typeOfCancer", cancerStudy.getTypeOfCancerId()); - - // Get all Genetic Profiles Associated with this Cancer Study ID. - ArrayList geneticProfileList = GetGeneticProfiles.getGeneticProfiles(cancerStudyId); - - // Get all Patient Lists Associated with this Cancer Study ID. - ArrayList sampleSetList = GetSampleLists.getSampleLists(cancerStudyId); - - // Get the default patient set - AnnotatedSampleSets annotatedSampleSets = new AnnotatedSampleSets(sampleSetList, dataTypePriority); - SampleList defaultSampleSet = annotatedSampleSets.getDefaultSampleList(); - if (defaultSampleSet == null) { - continue; - } - - List sampleIds = defaultSampleSet.getSampleList(); - - // Get the default genomic profiles - CategorizedGeneticProfileSet categorizedGeneticProfileSet = - new CategorizedGeneticProfileSet(geneticProfileList); - HashMap defaultGeneticProfileSet = null; - switch (dataTypePriority) { - case 2: - defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultCopyNumberMap(); - break; - case 1: - defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultMutationMap(); - break; - case 0: - default: - defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultMutationAndCopyNumberMap(); - } - - String mutationProfile = "", cnaProfile = ""; - for (GeneticProfile geneticProfile : defaultGeneticProfileSet.values()) { - GeneticAlterationType geneticAlterationType = geneticProfile.getGeneticAlterationType(); - if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - cnaProfile = geneticProfile.getStableId(); - } else if (geneticAlterationType == GeneticAlterationType.MUTATION_EXTENDED) { - mutationProfile = geneticProfile.getStableId(); - } - } - - cancerMap.put("mutationProfile", mutationProfile); - cancerMap.put("cnaProfile", cnaProfile); - - cancerMap.put("caseSetId", defaultSampleSet.getStableId()); - cancerMap.put("caseSetLength", sampleIds.size()); - - - ProfileDataSummary genomicData = getGenomicData( - cancerStudyId, - defaultGeneticProfileSet, - defaultSampleSet, - geneList, - sampleSetList, - request, - response - ); - - ArrayList geneFrequencyList = genomicData.getGeneFrequencyList(); - ArrayList genes = new ArrayList(); - for (GeneWithScore geneWithScore : geneFrequencyList) - genes.add(geneWithScore.getGene()); - int noOfMutated = 0, - noOfCnaUp = 0, - noOfCnaDown = 0, - noOfCnaLoss = 0, - noOfCnaGain = 0, - noOfOther = 0, - noOfAll = 0; - - boolean skipStudy = defaultGeneticProfileSet.isEmpty(); - if (!skipStudy) { - - for (String sampleId: sampleIds) { - if (sampleId == null) { - continue; - } - if (!genomicData.isCaseAltered(sampleId)) continue; - - boolean isAnyMutated = false, - isAnyCnaUp = false, - isAnyCnaDown = false, - isAnyCnaLoss = false, - isAnyCnaGain = false - ; - - for (String gene : genes) { - isAnyMutated |= genomicData.isGeneMutated(gene, sampleId); - GeneticTypeLevel cnaLevel = genomicData.getCNALevel(gene, sampleId); - boolean isCnaUp = cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.Amplified); - isAnyCnaUp |= isCnaUp; - boolean isCnaDown = cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.HomozygouslyDeleted); - isAnyCnaDown |= isCnaDown; - boolean isCnaLoss = cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.HemizygouslyDeleted); - isAnyCnaLoss |= isCnaLoss; - boolean isCnaGain = cnaLevel != null && cnaLevel.equals(GeneticTypeLevel.Gained); - isAnyCnaGain |= isCnaGain; - } - - boolean isAnyCnaChanged = isAnyCnaUp || isAnyCnaDown; - if (isAnyMutated && !isAnyCnaChanged) - noOfMutated++; - else if (isAnyMutated && isAnyCnaChanged) - noOfOther++; - else if (isAnyCnaUp) - noOfCnaUp++; - else if (isAnyCnaDown) - noOfCnaDown++; - else if (isAnyCnaGain) - noOfCnaGain++; - else if (isAnyCnaLoss) - noOfCnaLoss++; - - noOfAll++; - } - } - - Map alterations = new LinkedHashMap(); - cancerMap.put("alterations", alterations); - alterations.put("all", noOfAll); - alterations.put("mutation", noOfMutated); - alterations.put("cnaUp", noOfCnaUp); - alterations.put("cnaDown", noOfCnaDown); - alterations.put("cnaLoss", noOfCnaLoss); - alterations.put("cnaGain", noOfCnaGain); - alterations.put("other", noOfOther); - cancerMap.put("genes", genes); - cancerMap.put("skipped", skipStudy); - - resultsList.add(cancerMap); - } - - JSONValue.writeJSONString(resultsList, writer); - } catch (DaoException e) { - throw new ServletException(e); - } catch (ProtocolException e) { - throw new ServletException(e); - } finally { - writer.close(); - } - } - - /** - * Gets all Genomic Data. - */ - private ProfileDataSummary getGenomicData(String cancerStudyId, HashMap defaultGeneticProfileSet, - SampleList defaultSampleSet, String geneListStr, ArrayList sampleList, - HttpServletRequest request, - HttpServletResponse response) throws IOException, - ServletException, DaoException { - - // parse geneList, written in the OncoPrintSpec language (except for changes by XSS clean) - double zScore = ZScoreUtil.getZScore(new HashSet(defaultGeneticProfileSet.keySet()), - new ArrayList(defaultGeneticProfileSet.values()), request); - double rppaScore = ZScoreUtil.getRPPAScore(request); - - ParserOutput theOncoPrintSpecParserOutput = - OncoPrintSpecificationDriver.callOncoPrintSpecParserDriver(geneListStr, - new HashSet(defaultGeneticProfileSet.keySet()), - new ArrayList(defaultGeneticProfileSet.values()), zScore, rppaScore); - - ArrayList geneList = new ArrayList(); - geneList.addAll(theOncoPrintSpecParserOutput.getTheOncoPrintSpecification().listOfGenes()); - - ArrayList profileDataList = new ArrayList(); - Set warningUnion = new HashSet(); - - - for (GeneticProfile profile : defaultGeneticProfileSet.values()) { - try { - GetProfileData remoteCall = - new GetProfileData(profile, geneList, - StringUtils.join(defaultSampleSet.getSampleList(), " ")); - ProfileData pData = remoteCall.getProfileData(); - warningUnion.addAll(remoteCall.getWarnings()); - profileDataList.add(pData); - } catch (IllegalArgumentException e) { - e.getStackTrace(); - } - } - - ProfileMerger merger = new ProfileMerger(profileDataList); - ProfileData mergedProfile = merger.getMergedProfile(); - - ProfileDataSummary dataSummary = new ProfileDataSummary(mergedProfile, - theOncoPrintSpecParserOutput.getTheOncoPrintSpecification(), zScore, rppaScore); - return dataSummary; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/DbVersionException.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/DbVersionException.java deleted file mode 100644 index 2a5f886cdd6..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/DbVersionException.java +++ /dev/null @@ -1,38 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -/** - * Throw this when there is a mismatch between DB version and portal expected version. - * - * @author Pieter Lukasse - */ -@SuppressWarnings("serial") -public class DbVersionException extends Exception { - - public DbVersionException(String errorMessage) { - super(errorMessage); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/EchoFile.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/EchoFile.java deleted file mode 100644 index 2f4a55ad2a4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/EchoFile.java +++ /dev/null @@ -1,147 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import au.com.bytecode.opencsv.CSVReader; -import org.apache.commons.fileupload.FileItem; -import org.apache.commons.fileupload.FileUploadException; -import org.apache.commons.fileupload.disk.DiskFileItemFactory; -import org.apache.commons.fileupload.servlet.ServletFileUpload; -import org.apache.commons.io.IOUtils; -import org.json.simple.JSONObject; -import org.owasp.validator.html.PolicyException; - -import javax.servlet.http.HttpServlet; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import com.fasterxml.jackson.databind.ObjectMapper; - -import java.io.*; -import java.util.*; - -public class EchoFile extends HttpServlet { - - public static final int MAX_NO_GENES = 30; - - /** - * Initializes the servlet. - * - * @throws ServletException - */ - public void init() throws ServletException { - - super.init(); - } - - /** - * - * If you specify the `str` parameter in the request, the servlet echoes back the string as is. - * - * If you specify files in the request, each file gets echoed back as a json object - * { name -> string (content of file)} - * - * @param request - * @param response - * @throws ServletException - * @throws IOException - */ - protected void doPost(HttpServletRequest request, - HttpServletResponse response) throws ServletException, IOException { - - Writer writer = response.getWriter(); - - try { - - String str = request.getParameter("str"); - - if (str != null) { - writer.write(request.getParameter("str")); - return; - } - - Map fieldName2fileContent = new HashMap(); - - List items = new ServletFileUpload(new DiskFileItemFactory()).parseRequest(request); - - for (FileItem item : items) { - if (item.getSize() == 0) { - // skip empty files - continue; - } - - InputStream contentStream = item.getInputStream(); - String fieldName = item.getFieldName(); - - // slurp the file as a string - String encoding = "UTF-8"; - StringWriter stringWriter = new StringWriter(); - IOUtils.copy(contentStream, stringWriter, encoding); - String contentString = stringWriter.toString(); - - fieldName2fileContent.put(fieldName, contentString); - } - - // write the objects out as json - response.setContentType("application/json"); - ObjectMapper mapper = new ObjectMapper(); - mapper.writeValue(writer, fieldName2fileContent); - } - - // catch all exceptions - catch (Exception e) { - - // "log" it - System.out.println(e); - - // hide details from user - throw new ServletException("there was an error processing your request"); - } - } - - /** - * Forwards to doPost - * - * doGet == doPost - * - * @param request - * @param response - * @throws ServletException - * @throws IOException - */ - protected void doGet(HttpServletRequest request, - HttpServletResponse response) throws ServletException, IOException { - doPost(request, response); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/GetCoExpressionJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/GetCoExpressionJSON.java deleted file mode 100644 index 329d585250f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/GetCoExpressionJSON.java +++ /dev/null @@ -1,274 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import java.util.*; -import java.lang.Math; - -import org.json.simple.JSONObject; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import com.fasterxml.jackson.databind.JsonNode; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.node.ObjectNode; - -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import org.apache.commons.math3.stat.correlation.PearsonsCorrelation; -import org.apache.commons.math3.stat.correlation.SpearmansCorrelation; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.CoExpUtil; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.util.XssRequestWrapper; - -/** - * Get the top co-expressed genes for queried genes - * - * @param : cancer study id - * @param : queried genes - * @return : JSON objects of co-expression under the same cancer_study - * (but always the mrna genetic profile) - */ -public class GetCoExpressionJSON extends HttpServlet { - - private double coExpScoreThreshold = 0.3; - //private int resultLength = 250; - - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Initializes the servlet. - */ - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles the HTTP POST Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - - String cancerStudyIdentifier = httpServletRequest.getParameter("cancer_study_id"); - CancerStudy cancerStudy = null; - ArrayList fullResultJson = new ArrayList(); - ObjectMapper mapper = new ObjectMapper(); - httpServletResponse.setContentType("application/json"); - PrintWriter out = httpServletResponse.getWriter(); - try{ - if(cancerStudyIdentifier != null) { - cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - if (cancerStudy == null || accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 0) { - mapper.writeValue(out, fullResultJson); - return; - } - } else { - mapper.writeValue(out, fullResultJson); - return; - } - } catch (DaoException e) { - System.out.println(e.getMessage()); - return; - } - - String geneSymbol = httpServletRequest.getParameter("gene"); - if (httpServletRequest instanceof XssRequestWrapper) { - geneSymbol = ((XssRequestWrapper) httpServletRequest).getRawParameter("gene"); - } - String profileId = httpServletRequest.getParameter("profile_id"); - String caseSetId = httpServletRequest.getParameter("case_set_id"); - String caseIdsKey = httpServletRequest.getParameter("case_ids_key"); - boolean isFullResult = Boolean.parseBoolean(httpServletRequest.getParameter("is_full_result")); - - PearsonsCorrelation pearsonsCorrelation = new PearsonsCorrelation(); - SpearmansCorrelation spearmansCorrelation = new SpearmansCorrelation(); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - CanonicalGene geneObj = daoGeneOptimized.getGene(geneSymbol); - Long queryGeneId = geneObj.getEntrezGeneId(); - - if (!isFullResult) { - GeneticProfile final_gp = DaoGeneticProfile.getGeneticProfileByStableId(profileId); - if (final_gp != null) { - try { - Map map = CoExpUtil.getExpressionMap(final_gp.getGeneticProfileId(), caseSetId, caseIdsKey); - int mapSize = map.size(); - List genes = new ArrayList(map.keySet()); - for (int i = 0; i < mapSize; i++) { - double[] query_gene_exp = map.get(queryGeneId); - long compared_gene_id = genes.get(i); - double[] compared_gene_exp = map.get(compared_gene_id); - if (compared_gene_exp != null && query_gene_exp != null) { - //Filter out cases with empty value on either side - int min_length = query_gene_exp.length < compared_gene_exp.length ? query_gene_exp.length : compared_gene_exp.length; - ArrayList new_query_gene_exp_arrlist = new ArrayList(); - ArrayList new_compared_gene_exp_arrlist = new ArrayList(); - for (int k = 0; k < min_length; k++) { - if (!Double.isNaN(query_gene_exp[k]) && !Double.isNaN(compared_gene_exp[k])) { - new_query_gene_exp_arrlist.add(query_gene_exp[k]); - new_compared_gene_exp_arrlist.add(compared_gene_exp[k]); - } - } - Double[] _new_query_gene_exp = new_query_gene_exp_arrlist.toArray(new Double[0]); - Double[] _new_compared_gene_exp = new_compared_gene_exp_arrlist.toArray(new Double[0]); - //convert double object to primitive data - double[] new_query_gene_exp = new double[_new_query_gene_exp.length]; - double[] new_compared_gene_exp = new double[_new_compared_gene_exp.length]; - for (int m = 0; m < _new_query_gene_exp.length; m++) { - new_query_gene_exp[m] = _new_query_gene_exp[m].doubleValue(); - new_compared_gene_exp[m] = _new_compared_gene_exp[m].doubleValue(); - } - - if (new_query_gene_exp.length != 0 && new_compared_gene_exp.length != 0) { - double pearson = pearsonsCorrelation.correlation(new_query_gene_exp, new_compared_gene_exp); - if ((pearson >= coExpScoreThreshold || - pearson <= (-1) * coExpScoreThreshold) && - (compared_gene_id != queryGeneId)) { - //Only calculate spearman with high scored pearson gene pairs. - double spearman = spearmansCorrelation.correlation(new_query_gene_exp, new_compared_gene_exp); - if ((spearman >= coExpScoreThreshold || spearman <= (-1) * coExpScoreThreshold) && - ((spearman > 0 && pearson > 0) || (spearman < 0 && pearson < 0))) { - CanonicalGene comparedGene = daoGeneOptimized.getGene(compared_gene_id); - ObjectNode _scores = mapper.createObjectNode(); - _scores.put("gene", comparedGene.getHugoGeneSymbolAllCaps()); - _scores.put("pearson", pearson); - _scores.put("spearman", spearman); - fullResultJson.add(_scores); - } - } - } - } - } - mapper.writeValue(out, fullResultJson); - } catch (DaoException e) { - System.out.println(e.getMessage()); - mapper.writeValue(out, new JSONObject()); - } - } else { - mapper.writeValue(out, new JSONObject()); - } - } else { - StringBuilder fullResutlStr = new StringBuilder(); - fullResutlStr.append("Gene Symbol\tCytoband\tPearson Score\tSpearman Score\n"); - GeneticProfile final_gp = DaoGeneticProfile.getGeneticProfileByStableId(profileId); - if (final_gp != null) { - try { - Map map = CoExpUtil.getExpressionMap(final_gp.getGeneticProfileId(), caseSetId, caseIdsKey); - int mapSize = map.size(); - List genes = new ArrayList(map.keySet()); - for (int i = 0; i < mapSize; i++) { - double[] query_gene_exp = map.get(queryGeneId); - long compared_gene_id = genes.get(i); - double[] compared_gene_exp = map.get(compared_gene_id); - if (compared_gene_exp != null && query_gene_exp != null) { - //Filter out cases with empty value on either side - int min_length = (query_gene_exp.length < compared_gene_exp.length) ? query_gene_exp.length : compared_gene_exp.length; - ArrayList new_query_gene_exp_arrlist = new ArrayList(); - ArrayList new_compared_gene_exp_arrlist = new ArrayList(); - for (int k = 0; k < min_length; k++) { - if (!Double.isNaN(query_gene_exp[k]) && !Double.isNaN(compared_gene_exp[k])) { - new_query_gene_exp_arrlist.add(query_gene_exp[k]); - new_compared_gene_exp_arrlist.add(compared_gene_exp[k]); - } - } - Double[] _new_query_gene_exp = new_query_gene_exp_arrlist.toArray(new Double[0]); - Double[] _new_compared_gene_exp = new_compared_gene_exp_arrlist.toArray(new Double[0]); - //convert double object to primitive data - double[] new_query_gene_exp = new double[_new_query_gene_exp.length]; - double[] new_compared_gene_exp = new double[_new_compared_gene_exp.length]; - for (int m = 0; m < _new_query_gene_exp.length; m++) { - new_query_gene_exp[m] = _new_query_gene_exp[m].doubleValue(); - new_compared_gene_exp[m] = _new_compared_gene_exp[m].doubleValue(); - } - if (new_query_gene_exp.length != 0 && new_compared_gene_exp.length != 0 && - compared_gene_id != queryGeneId) { - double pearson = pearsonsCorrelation.correlation(new_query_gene_exp, new_compared_gene_exp); - double spearman = spearmansCorrelation.correlation(new_query_gene_exp, new_compared_gene_exp); - CanonicalGene comparedGene = daoGeneOptimized.getGene(compared_gene_id); - fullResutlStr.append( - comparedGene.getHugoGeneSymbolAllCaps() + "\t" + - (double) Math.round(pearson * 100) / 100 + "\t" + - (double) Math.round(spearman * 100) / 100 + "\n" - ); - } - } - } - //construct file name - String fileName = "coexpression_" + geneSymbol + "_" + - final_gp.getProfileName().replaceAll("\\s+", "_") + "_" + - cancerStudyIdentifier.replaceAll("\\s+", "_") + ".txt"; - - httpServletResponse.setContentType("text/html"); - httpServletResponse.setContentType("application/force-download"); - httpServletResponse.setHeader("content-disposition", "inline; filename='" + fileName + "'"); - out = httpServletResponse.getWriter(); - JSONValue.writeJSONString(fullResutlStr, out); - } catch (DaoException e) { - System.out.println(e.getMessage()); - JSONValue.writeJSONString(new JSONObject(), out); - } - } else { - JSONValue.writeJSONString(new JSONObject(), out); - } - } - - } -} - - - diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/GetSurvivalDataJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/GetSurvivalDataJSON.java deleted file mode 100644 index bcdd8bdb06d..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/GetSurvivalDataJSON.java +++ /dev/null @@ -1,184 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.IOException; -import java.io.PrintWriter; -import java.util.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.web_api.GetClinicalData; -import org.mskcc.cbio.portal.util.*; - -import org.json.simple.*; - -import javax.servlet.ServletConfig; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - - -/** - * Author: yichaoS - * Date: 8/13 - * - * Retrieves survival information from clinical data. - * @param: case set id / case ids key, cancer study id - * @return: Set of case id & overall survival months/status & diease free months/status in JSON format - */ -public class GetSurvivalDataJSON extends HttpServlet { - - // class which process access control to cancer studies - private AccessControl accessControl; - - @Override - public void init(ServletConfig config) throws ServletException { - super.init(config); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws javax.servlet.ServletException - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles the HTTP POST Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - - String cancerStudyIdentifier = httpServletRequest.getParameter("cancer_study_id"); - String sampleSetId = httpServletRequest.getParameter("case_set_id"); - String sampleIdsKey = httpServletRequest.getParameter("case_ids_key"); - //So far only accept single data type - String dataType = httpServletRequest.getParameter("data_type"); - CancerStudy cancerStudy = null; - try { - if (cancerStudyIdentifier != null) { - cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - if (cancerStudy == null - || accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 0) { - return; - } - } else { - return; - } - int cancerStudyId = cancerStudy.getInternalId(); - - //Get patient ID list - DaoSampleList daoSampleList = new DaoSampleList(); - SampleList sampleList; - ArrayList sampleIdList = new ArrayList(); - if (sampleSetId.equals("-1") && sampleIdsKey.length() != 0) { - String strSampleIds = SampleSetUtil.getSampleIds(sampleIdsKey); - String[] sampleArray = strSampleIds.split("\\s+"); - for (String item : sampleArray) { - sampleIdList.add(item); - } - } else { - sampleList = daoSampleList.getSampleListByStableId(sampleSetId); - sampleIdList = sampleList.getSampleList(); - } - - //Get Clinical Data List - NOTE - as of 12/12/14, patient lists contain sample ids - HashSet patientIdListHashSet = new HashSet(InternalIdUtil.getStablePatientIdsFromSampleIds(cancerStudyId, sampleIdList)); - List clinicalDataList = - GetClinicalData.getClinicalData(cancerStudyId, patientIdListHashSet); - - //Assemble JSON object (key <-- patient id) - JSONObject results = new JSONObject(); - for (int i = 0; i < clinicalDataList.size(); i++){ - Patient clinicalData = clinicalDataList.get(i); - JSONObject _result = new JSONObject(); - - _result.put("case_id", clinicalData.getStableId()); - if (dataType.equalsIgnoreCase("os")) { - if (clinicalData.getOverallSurvivalMonths() == null) { - _result.put("months", "NA"); - } else { - _result.put("months", clinicalData.getOverallSurvivalMonths()); - } - String osStatus = clinicalData.getOverallSurvivalStatus(); - if(osStatus == null || osStatus.length() == 0) { - _result.put("status", "NA"); - } else if (osStatus.equalsIgnoreCase("1:DECEASED")) { - _result.put("status", "1"); - } else if(osStatus.equalsIgnoreCase("0:LIVING")) { - _result.put("status", "0"); - } - } else if (dataType.equalsIgnoreCase("dfs")) { - if (clinicalData.getDiseaseFreeSurvivalMonths() == null) { - _result.put("months", "NA"); - } else { - _result.put("months", clinicalData.getDiseaseFreeSurvivalMonths()); - } - String dfsStatus = clinicalData.getDiseaseFreeSurvivalStatus(); - if(dfsStatus == null || dfsStatus.length() == 0) { - _result.put("status", "NA"); - }else if (dfsStatus.equalsIgnoreCase("1:Recurred/Progressed") || dfsStatus.equalsIgnoreCase("1:Recurred")) { - _result.put("status", "1"); - } else if(dfsStatus.equalsIgnoreCase("0:DiseaseFree")) { - _result.put("status", "0"); - } - } - results.put(clinicalData.getStableId(), _result); - } - - httpServletResponse.setContentType("application/json"); - PrintWriter out = httpServletResponse.getWriter(); - JSONValue.writeJSONString(results, out); - - } catch (DaoException e) { - httpServletResponse.setContentType("application/text"); - PrintWriter out = httpServletResponse.getWriter(); - out.print("DaoException: " + e.getMessage()); - out.flush(); - } - - } - -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/GisticJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/GisticJSON.java deleted file mode 100644 index 6120f87c4a8..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/GisticJSON.java +++ /dev/null @@ -1,172 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.json.simple.JSONArray; -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGistic; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Gistic; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.owasp.validator.html.PolicyException; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import java.util.*; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * JSON servlet for fetching Gistic data. - * If there is no Gistic data, then return an empty JSON. - * @author Gideon Dresdner - */ -public class GisticJSON extends HttpServlet { - public static final String SELECTED_CANCER_STUDY = "selected_cancer_type"; - private static Logger log = LoggerFactory.getLogger(GisticJSON.class); - - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Initializes the servlet. - * - * @throws ServletException - */ - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Make a map out of every mutsig - * Add that map to the mutSigJSONArray - * Returns the empty set, {}, if qval > 0.01 (specificed by Ethan) - */ - public static Map Gistic_toMap(Gistic gistic) { - Map map = new HashMap(); - - map.put("chromosome", gistic.getChromosome()); - map.put("cytoband", gistic.getCytoband()); - map.put("peakStart", gistic.getPeakStart()); - map.put("peakEnd", gistic.getPeakEnd()); - - // convert CanonicalGenes in ROI to strings - ArrayList nonSangerGenes = new ArrayList(); - ArrayList sangerGenes = new ArrayList(); - - for (CanonicalGene g : gistic.getGenes_in_ROI()) { - nonSangerGenes.add(g.getHugoGeneSymbolAllCaps()); - } - - map.put("sangerGenes", sangerGenes); - map.put("nonSangerGenes", nonSangerGenes); - map.put("qval", gistic.getqValue()); - map.put("ampdel", gistic.getAmp()); - - return map; - } - - /** - * - * @param request - * @param response - * @throws ServletException - * @throws IOException - */ - @Override - public void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - - String cancer_study_id = request.getParameter(SELECTED_CANCER_STUDY); - // Collections.sort(gistics, new sortMutsigByRank()); - JSONArray gisticJSONArray = new JSONArray(); - try { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancer_study_id); - if(cancerStudy != null && accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - if (log.isDebugEnabled()) { - log.debug("cancerStudyId passed to GisticJSON: " + cancerStudy.getInternalId()) ; - } - - ArrayList gistics = DaoGistic.getAllGisticByCancerStudyId(cancerStudy.getInternalId()); - - if (log.isDebugEnabled()) { - log.debug("list of gistics associated with cancerStudy: " + gistics) ; - } - - for (Gistic gistic : gistics) { - Map map = Gistic_toMap(gistic); - - if (!map.isEmpty()) { - gisticJSONArray.add(map); - } - } - } - - response.setContentType("application/json"); - PrintWriter out = response.getWriter(); - - try { - JSONValue.writeJSONString(gisticJSONArray, out); - } finally { - out.close(); - } - } catch (DaoException e) { - log.error("Error occurred", e); - throw new ServletException(e); - } - } - - /** - * Just in case the request changes from GET to POST - * @param request - * @param response - * @throws ServletException - * @throws IOException - */ - public void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException - { - doGet(request, response); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/IGVLinkingJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/IGVLinkingJSON.java deleted file mode 100644 index 73002bf0dee..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/IGVLinkingJSON.java +++ /dev/null @@ -1,149 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.IOException; -import java.io.PrintWriter; -import java.net.URLEncoder; -import java.util.ArrayList; -import java.util.List; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.json.simple.JSONObject; -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.util.IGVLinking; - -import com.google.common.base.Joiner; - -/** - * - * @author benjamin - */ -public class IGVLinkingJSON extends HttpServlet { - - public static final String CMD = "cmd"; - public static final String CANCER_STUDY_ID = "cancer_study_id"; - public static final String CASE_ID = "case_id"; - public static final String LOCUS = "locus"; // IGV locus string, e.g. chr1:000-200 - - private static final int CANCER_STUDY_ID_INDEX = 0; - private static final int CASE_ID_INDEX = 1; - private static final int LOCUS_INDEX = 2; - private static final String GENE_LIST = "gene_list"; - - @Override - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException - { - processRequest(request, response); - } - - @Override - protected void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException - { - processRequest(request, response); - } - - protected void processRequest(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - String cmd = request.getParameter(CMD); - response.setContentType("application/json"); - PrintWriter out = response.getWriter(); - JSONObject igvArgs = new JSONObject(); - try { - if ((cmd != null) && (cmd.equals("get_igv_args"))) { - String cancerStudyStableId = request.getParameter(CANCER_STUDY_ID); - cancerStudyStableId = cancerStudyStableId == null ? "" : cancerStudyStableId; - String geneList = request.getParameter(GENE_LIST); - geneList = geneList == null ? "" : geneList; - List onlyGenesList = new ArrayList(); - - String[] geneList_ = geneList.split(" "); - for (String gene_ : geneList_) { - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene(gene_); - if (gene != null && !gene.isMicroRNA() && !gene.isPhosphoProtein()) { - onlyGenesList.add(gene_); - } - } - String encodedGeneList = ""; - if (onlyGenesList.size() > 0) { - encodedGeneList = URLEncoder.encode(Joiner.on(' ').join(onlyGenesList), "UTF-8"); - } - String[] args = IGVLinking.getIGVArgsForSegViewing(cancerStudyStableId, encodedGeneList); - igvArgs.put("segfileUrl", args[0]); - igvArgs.put("geneList", args[1]); - igvArgs.put("referenceId", args[2]); - igvArgs.put("fileName", args[3]); - } else { - String[] parameters = getParameters(request); - if (parameters != null) { - String[] args = IGVLinking.getIGVArgsForBAMViewing(parameters[CANCER_STUDY_ID_INDEX], - parameters[CASE_ID_INDEX], parameters[LOCUS_INDEX]); - if (args != null && args.length == 4) { - igvArgs.put("bamFileUrl", args[0]); - igvArgs.put("encodedLocus", args[1]); - igvArgs.put("referenceGenome", args[2]); - igvArgs.put("trackName", args[3]); - } - } - } - JSONValue.writeJSONString(igvArgs, out); - } catch (Exception e) { - JSONValue.writeJSONString(new JSONObject(), out); - } finally { - out.close(); - } - - } - - private String[] getParameters(HttpServletRequest request) - { - String[] parameters = new String[3]; - parameters[CANCER_STUDY_ID_INDEX] = request.getParameter(CANCER_STUDY_ID); - parameters[CASE_ID_INDEX] = request.getParameter(CASE_ID); - parameters[LOCUS_INDEX] = request.getParameter(LOCUS); - - return (parameters[CANCER_STUDY_ID_INDEX] == null || - parameters[CASE_ID_INDEX] == null || - parameters[LOCUS_INDEX] == null) ? null : parameters; - - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/MutSigJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/MutSigJSON.java deleted file mode 100644 index f20202dabcf..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/MutSigJSON.java +++ /dev/null @@ -1,159 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.json.simple.JSONArray; -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoMutSig; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.MutSig; -import org.owasp.validator.html.PolicyException; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import java.util.*; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - - -/** - * - * JSON servlet for fetching MutSig data. - * If there is no MutSig data, then return an empty JSON. - * @author Gideon Dresdner - */ -public class MutSigJSON extends HttpServlet { - public static final String SELECTED_CANCER_STUDY = "selected_cancer_type"; - private static Logger log = LoggerFactory.getLogger(MutSigJSON.class); - - // - // Initializes the servlet. - // - public void init() throws ServletException { - super.init(); - } - - // Make a map out of every mutsig - // Add that map to the mutSigJSONArray - // Returns the empty set, {}, if qval > 0.01 (specificed by Ethan) - public static Map MutSigtoMap(MutSig mutsig) { - Map map = new HashMap(); - - map.put("gene_symbol", mutsig.getCanonicalGene().getStandardSymbol()); - map.put("num_muts", mutsig.getNumMutations()); - map.put("qval", mutsig.getqValue()); - - return map; - } - - /** - * Sort Mutsigs by rank, which is determined by q-value. - * So actually we are sorting by q-value - */ - private class sortMutsigByRank implements Comparator { - public int compare(MutSig mutSig1, MutSig mutSig2) { - - // Collections.sort is in ascending order and - // we want the smallest q-value at the top - return mutSig1.getRank() - mutSig2.getRank(); - } - } - - // - // Handles HTTP GET request - // - @Override - public void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException - { - - String cancer_study_id = request.getParameter(SELECTED_CANCER_STUDY); - JSONArray mutSigJSONArray = new JSONArray(); - - try { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancer_study_id); - - if (log.isDebugEnabled()) { - log.debug("cancerStudyId passed to MutSigJSON: " + cancerStudy.getInternalId()); - } - - ArrayList mutSigList = DaoMutSig.getAllMutSig(cancerStudy.getInternalId()); - - if (log.isDebugEnabled()) { - log.debug("no of mutsigs associated with cancerStudy: " + mutSigList.size() + "\n"); - } - - Collections.sort(mutSigList, new sortMutsigByRank()); - - int i = 0; - for (MutSig mutsig : mutSigList) { - -// log.debug("" + mutsig.toString() + " " + i++); - - Map map = MutSigtoMap(mutsig); - -// log.debug(map); - - if (!map.isEmpty()) { - mutSigJSONArray.add(map); - } - } - response.setContentType("application/json"); - PrintWriter out = response.getWriter(); - - try { - JSONValue.writeJSONString(mutSigJSONArray, out); - } finally { - out.close(); - } - - } catch (DaoException e) { - throw new ServletException(e); - } - } - - // Just in case the request changes from GET to POST - public void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException - { - doGet(request, response); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/MutationAlignerServlet.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/MutationAlignerServlet.java deleted file mode 100644 index a7a943a0746..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/MutationAlignerServlet.java +++ /dev/null @@ -1,123 +0,0 @@ -package org.mskcc.cbio.portal.servlet; - -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -import org.json.simple.JSONValue; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.*; -import java.net.HttpURLConnection; -import java.net.URL; -import java.net.URLConnection; -import java.util.HashMap; -import java.util.Map; - -/** - * Servlet class to request information from Mutation Aligner web service. - * - * @author Selcuk Onur Sumer - */ -public class MutationAlignerServlet extends HttpServlet -{ - public final static String MUTATION_ALIGNER_API = "http://mutationaligner.org/api/domains/"; - public final static String MUTATION_ALIGNER_API_SUFFIX = "?metadata=true"; - public final static String MUTATION_ALIGNER_BASE_LINK = "http://mutationaligner.org/domains/"; - - private static String makeRequest(String pfamAccession) throws IOException - { - StringBuilder urlBuilder = new StringBuilder(); - - urlBuilder.append(MUTATION_ALIGNER_API); - urlBuilder.append(pfamAccession); - urlBuilder.append(MUTATION_ALIGNER_API_SUFFIX); - - String url = urlBuilder.toString(); - - URL aligner = new URL(url); - URLConnection alignerCxn = aligner.openConnection(); - - StringBuilder sb = new StringBuilder(); - - // not found! - if (((HttpURLConnection)alignerCxn).getResponseCode() != HttpURLConnection.HTTP_OK) - { - sb.append(""); - } - else - { - BufferedReader in = new BufferedReader(new InputStreamReader(alignerCxn.getInputStream())); - String line; - - // Read all - while((line = in.readLine()) != null) - { - sb.append(line); - } - - in.close(); - } - - - return sb.toString(); - } - - - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse)throws ServletException, IOException - { - doPost(httpServletRequest, httpServletResponse); - } - - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse)throws ServletException, IOException - { - String pfamAccession = httpServletRequest.getParameter("pfamAccession"); - String response = makeRequest(pfamAccession); - - httpServletResponse.setContentType("application/json"); - - Map data = new HashMap(); - - if (response != null && response.length() > 0) - { - data.put("linkToMutationAligner", MUTATION_ALIGNER_BASE_LINK + pfamAccession); - } - - PrintWriter out = httpServletResponse.getWriter(); - String jsonText = JSONValue.toJSONString(data); - out.write(jsonText); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/NetworkSbgnServlet.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/NetworkSbgnServlet.java deleted file mode 100644 index 315ae071845..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/NetworkSbgnServlet.java +++ /dev/null @@ -1,169 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; -/* -import cpath.client.CPath2Client; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.biopax.paxtools.controller.EditorMap; -import org.biopax.paxtools.controller.PropertyEditor; -import org.biopax.paxtools.controller.SimpleEditorMap; -import org.biopax.paxtools.io.sbgn.L3ToSBGNPDConverter; -import org.biopax.paxtools.io.sbgn.ListUbiqueDetector; -import org.biopax.paxtools.io.sbgn.idmapping.HGNC; -import org.biopax.paxtools.model.BioPAXElement; -import org.biopax.paxtools.model.Model; -import org.biopax.paxtools.model.level3.Xref; -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import javax.servlet.ServletException;*/ -import javax.servlet.http.HttpServlet; -/*import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.*; -import java.util.*; -*/ -/** - * Servlet class to request SBGN directly from cpath web service. - */ -public class NetworkSbgnServlet extends HttpServlet -{ -/* private final static Log log = LoggerFactory.getLogger(NetworkSbgnServlet.class); - - public final static String HGNC_GENE_PREFIX = "urn:biopax:RelationshipXref:HGNC_HGNC%3A"; - public final static String CPATH_SERVICE = "http://awabi.cbio.mskcc.org/cpath2/"; - public final static String NA = "NA"; - public final static Integer GRAPH_QUERY_LIMIT = 1; - public final static String ATTRIBUTES_FIELD = "attributes"; - public final static String SBGN_FIELD = "sbgn"; - public final static String GENES_FIELD = "genes"; - - private static ArrayList convert(String[] geneList) { - ArrayList convertedList = new ArrayList(); - DaoGeneOptimized daoGeneOptimized; - - daoGeneOptimized = DaoGeneOptimized.getInstance(); - - for(String gene: geneList) { - CanonicalGene cGene = daoGeneOptimized.getGene(gene); - String hgncId = HGNC.getID(cGene.getHugoGeneSymbolAllCaps()); - convertedList.add(HGNC_GENE_PREFIX.replace("+", "%2B") + hgncId); - } - - return convertedList; - } - - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse)throws ServletException, IOException - { - doPost(httpServletRequest, httpServletResponse); - } - - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse)throws ServletException, IOException - { - PrintWriter out = httpServletResponse.getWriter(); - String sourceSymbols = httpServletRequest.getParameter(QueryBuilder.GENE_LIST); - - String[] sourceGeneSet = sourceSymbols.split("\\s"); - - CPath2Client client = CPath2Client.newInstance(); - client.setEndPointURL(CPATH_SERVICE); - client.setGraphQueryLimit(GRAPH_QUERY_LIMIT); - client.setDirection(CPath2Client.Direction.BOTHSTREAM); - - ArrayList convertedList = convert(sourceGeneSet); - Model model = convertedList.size() > 1 - ? client.getPathsBetween(convertedList) - : client.getNeighborhood(convertedList); - - L3ToSBGNPDConverter converter - = new L3ToSBGNPDConverter(new ListUbiqueDetector(new HashSet()), null, true); - ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream(); - converter.writeSBGN(model, byteArrayOutputStream); - - // This is going to be our ultimate output - HashMap outputMap = new HashMap(); - outputMap.put(SBGN_FIELD, byteArrayOutputStream.toString()); - - // This will populate the genes field with all the genes found in the BioPAX model - outputMap.put(GENES_FIELD, extractGenes(model)); - - // The following will include RDF Id -> attributes map - HashMap>> attrMap = new HashMap>>(); - for (BioPAXElement bpe : model.getObjects()) - attrMap.put(bpe.getRDFId(), extractAttributes(bpe)); - outputMap.put(ATTRIBUTES_FIELD, attrMap); - - httpServletResponse.setContentType("application/json"); - JSONValue.writeJSONString(outputMap, out); - } - - private List extractGenes(Model model) { - HashSet genes = new HashSet(); - - for (Xref xref : model.getObjects(Xref.class)) { - if(xref.getDb() != null && xref.getDb().equalsIgnoreCase("HGNC")) { - String rawId = xref.getId(); - String id = rawId.split(":")[1].trim(); - String symbol = HGNC.getSymbol(id); - if(symbol != null) - genes.add(symbol); - } - } - - return new ArrayList(genes); - } - - private Map> extractAttributes(BioPAXElement bpe) { - EditorMap editorMap = SimpleEditorMap.L3; - Set editors = editorMap.getEditorsOf(bpe); - - Map> attributes = new HashMap>(); - for (PropertyEditor editor : editors) { - String key = editor.getProperty(); - Set valueFromBean = editor.getValueFromBean(bpe); - ArrayList strings = new ArrayList(); - for (Object o : valueFromBean) { - strings.add(o.toString()); - } - attributes.put(key, strings); - } - - return attributes; - } -*/ -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/OmaRedirectServlet.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/OmaRedirectServlet.java deleted file mode 100644 index 33d332ad80f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/OmaRedirectServlet.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.IOException; -import java.io.PrintWriter; -import java.net.MalformedURLException; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.util.OmaLinkUtil; - -/** - * Redirects Client to the Online Mutation Assessor (OMA). - * - * @author Ethan Cerami. - */ -public class OmaRedirectServlet extends HttpServlet { - - private static Logger logger = LoggerFactory.getLogger(OmaRedirectServlet.class); - - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - response.setContentType("text/html"); - String omaQueryString = request.getQueryString(); - PrintWriter writer = response.getWriter(); - try { - String omaUrl = OmaLinkUtil.createOmaLink(omaQueryString); - sendHtmlRedirect(writer, omaUrl); - } catch (MalformedURLException e) { - logError(omaQueryString, e); - sendErrorPage(writer, e); - } - writer.close(); - } - - /** - * We use an HTML meta Refresh Redirect, because this strips out the HTTP Referer - * header, which can cause problems with the OMA web site. - * - */ - private void sendHtmlRedirect(PrintWriter writer, String omaUrl) { - writer.write(""); - writer.write(""); - writer.write(""); - writer.write(""); - writer.write(""); - } - - private void logError(String urlString, MalformedURLException e) { - logger.warn("a request to OmaRedirectServlet contained a malformed URL:" + urlString); - logger.warn(" exception message: " + e.getMessage()); - } - - private void sendErrorPage(PrintWriter writer, MalformedURLException e) { - writer.write(""); - writer.write(""); - writer.write("Error during redirect"); - writer.write(""); - writer.write(""); - writer.write("

    An error occurred during the navigation to the requested link."); - writer.write(" 
     "); - writer.write("

    This error has been recorded in the webserver logs. We appologize for this problem, and we will try to correct it."); - writer.write(""); - writer.write(""); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/OncoPrintConverter.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/OncoPrintConverter.java deleted file mode 100644 index 1487cfb89f5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/OncoPrintConverter.java +++ /dev/null @@ -1,182 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -// imports -import org.mskcc.cbio.portal.util.XDebug; -import org.mskcc.cbio.portal.util.FileUploadRequestWrapper; - -import javax.servlet.ServletContext; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.RequestDispatcher; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.apache.commons.fileupload.FileItem; -import org.mskcc.cbio.portal.util.XssRequestWrapper; -import org.owasp.validator.html.PolicyException; - -import java.io.PrintWriter; -import java.io.IOException; -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -/** - * Servlet responsible for converting OncoPrint into SVG. - */ -public class OncoPrintConverter extends HttpServlet { - - private Pattern svgXPosPattern; - - /** - * Initializes the servlet. - * - * @throws ServletException - */ - public void init() throws ServletException { - - super.init(); - svgXPosPattern = Pattern.compile("( x=\"(\\d+)\")"); - } - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, - IOException { - - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles the HTTP POST Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - - // setup a debug object - XDebug xdebug = new XDebug( httpServletRequest ); - xdebug.logMsg(this, "Attempting to parse request parameters."); - - String xml = ""; - String format = ""; - if (httpServletRequest instanceof FileUploadRequestWrapper) { - - // get instance of our request wrapper - FileUploadRequestWrapper wrapper = (FileUploadRequestWrapper)httpServletRequest; - - // get format parameter - format = wrapper.getParameter("format"); - - // get xml parameter - xml = wrapper.getParameter("xml"); - } - else { - httpServletRequest.getParameter("format"); - xml = httpServletRequest.getParameter("xml"); - - // TODO - update antisamy.xml to support svg-xml - if (httpServletRequest instanceof XssRequestWrapper) - { - xml = ((XssRequestWrapper) httpServletRequest).getRawParameter("xml"); - } - - } - - String xmlHeader = ""; - xml = xmlHeader + xml; - if(!xml.contains("svg xmlns")) { - xml = xml.replace(". -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.IOException; -import java.io.PrintWriter; -import java.util.*; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.json.simple.JSONArray; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.dao.DaoMutation; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.web_api.ProtocolException; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.owasp.validator.html.PolicyException; - -/** - * @author Gideon Dresdner - * - */ -public class PancancerMutationsJSON extends HttpServlet { - private ServletXssUtil servletXssUtil; - private static Logger log = LoggerFactory.getLogger(PancancerMutationsJSON.class); - private static AccessControl accessControl = null; - - /** - * Initializes the servlet. - * - * @throws ServletException - */ - public void init() throws ServletException { - super.init(); - try { - servletXssUtil = ServletXssUtil.getInstance(); - } catch (PolicyException e) { - throw new ServletException(e); - } - } - - /** - * Initializes the AccessControl member. - * - * TODO: may want to refactor this into a public method somewhere that other's can use. I grabbed this from `PatientViewServlet` - */ - private static synchronized AccessControl getaccessControl() { - if (accessControl==null) { - accessControl = SpringUtil.getAccessControl(); - } - - return accessControl; - } - - - /** - * iterate over all cancer studies, for each one grab all the genetic profiles, - * but only grab the ones that are mutation profiles, - * and for each mutation profile count samples by mutation keyword - * - * @param keywords List of keywords as there are in the mutation sql table - * @return data Collection of (Map: String -> Object) - * @throws DaoException - */ - public Collection> byKeywords(List keywords) - throws DaoException, ProtocolException - { - return DaoMutation.countSamplesWithKeywords(keywords, internalGeneticProfileIds()); - } - - /** - * - * @param hugos - * @return - * @throws DaoException - */ - public Collection> byHugos(List hugos) - throws DaoException, ProtocolException - { - return DaoMutation.countSamplesWithGenes(hugos, internalGeneticProfileIds()); - } - - /** - * - * @param proteinChanges - * @return - * @throws DaoException - * @throws ProtocolException - */ - public Collection> byProteinChanges(List proteinChanges) - throws DaoException, ProtocolException - { - return DaoMutation.countSamplesWithProteinChanges(proteinChanges, internalGeneticProfileIds()); - } - - public Collection> byProteinPosStarts(List proteinPosStarts) - throws DaoException, ProtocolException - { - List posWithEntrez = new ArrayList(); - - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - // assuming that protein position start string is in a format _ - Pattern p = Pattern.compile("(.+)_([0-9]+)"); - for (String proteinPos: proteinPosStarts) - { - Matcher m = p.matcher(proteinPos); - if (m.find()) { - String symbol = m.group(1); - String position = m.group(2); - CanonicalGene gene = daoGeneOptimized.getGene(symbol); - if (gene!=null) { - long entrezId = gene.getEntrezGeneId(); - - // create the query string: (,) - posWithEntrez.add("(" + entrezId + "," + position + ")"); - } - } - - String[] parts = proteinPos.split("_"); - } - - if (posWithEntrez.isEmpty()) { - return Collections.emptySet(); - } - - return DaoMutation.countSamplesWithProteinPosStarts(posWithEntrez, internalGeneticProfileIds()); - } - - public Collection internalGeneticProfileIds() throws DaoException, ProtocolException - { - List allCancerStudies = getaccessControl().getCancerStudies(); - Collection internalGeneticProfileIds = new ArrayList(); - - for (CancerStudy cancerStudy : allCancerStudies) { - Integer internalId = cancerStudy.getInternalId(); - - List geneticProfiles = DaoGeneticProfile.getAllGeneticProfiles(internalId); - - for (GeneticProfile geneticProfile : geneticProfiles) { - - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MUTATION_EXTENDED) { - internalGeneticProfileIds.add(geneticProfile.getGeneticProfileId()); - } - } - } - - if (internalGeneticProfileIds.isEmpty()) { - throw new DaoException("no genetic_profile_ids found"); - } - - return internalGeneticProfileIds; - } - - /** - * the request requires a parameter "mutation_keys" which is a JSON list of strings. - * - * @param request - * @param response - * @throws ServletException - * @throws IOException - */ - @Override - public void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - - Collection> data = null; - PrintWriter writer = response.getWriter(); - response.setContentType("application/json"); - - String cmd = request.getParameter("cmd"); - String query = request.getParameter("q"); - - if (query == null || query.equals("")) { - throw new ServletException("no q parameter provided"); - } - List queryTerms = Arrays.asList(query.split(",")); - - if (cmd.equals("byKeywords")) { - try { - data = byKeywords(queryTerms); - } catch (DaoException e) { - throw new ServletException(e); - } catch (ProtocolException e) { - throw new ServletException(e); - } - } - else if (cmd.equals("byHugos")) { - try { - data = byHugos(queryTerms); - } catch (DaoException e) { - throw new ServletException(e); - } catch (ProtocolException e) { - throw new ServletException(e); - } - } - else if (cmd.equals("byMutations")) { - try { - data = byProteinChanges(queryTerms); - } catch (DaoException e) { - throw new ServletException(e); - } catch (ProtocolException e) { - throw new ServletException(e); - } - } - else if (cmd.equals("byProteinPos")) { - try { - data = byProteinPosStarts(queryTerms); - } catch (DaoException e) { - throw new ServletException(e); - } catch (ProtocolException e) { - throw new ServletException(e); - } - } - else { - throw new ServletException("cmd not found"); - } - - JSONArray.writeJSONString((List) data, writer); - } - - @Override - public void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { - doGet(request, response); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/PatientView.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/PatientView.java deleted file mode 100644 index dc835300362..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/PatientView.java +++ /dev/null @@ -1,161 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - - -import java.io.IOException; -import javax.servlet.RequestDispatcher; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.util.*; - -import org.springframework.web.context.support.SpringBeanAutowiringSupport; - -import javax.servlet.*; - -/** - * - * @author jj - */ -public class PatientView extends HttpServlet { - public static final String SAMPLE_ID = "sample_id"; - public static final String PATIENT_ID = "case_id"; - public static final String HAS_ALLELE_FREQUENCY_DATA = "has_allele_frequency_data"; - public static final String MUTATION_PROFILE = "mutation_profile"; - public static final String CNA_PROFILE = "cna_profile"; - public static final String MRNA_PROFILE = "mrna_profile"; - - public static final String DRUG_TYPE = "drug_type"; - public static final String DRUG_TYPE_CANCER_DRUG = "cancer_drug"; - public static final String DRUG_TYPE_FDA_ONLY = "fda_approved"; - - private static Logger logger = LoggerFactory.getLogger(PatientView.class); - - @Override - public void init(ServletConfig config) throws ServletException { - super.init(config); - SpringBeanAutowiringSupport.processInjectionBasedOnServletContext(this, - config.getServletContext()); - } - - /** - * Processes requests for both HTTP GET and POST methods. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - protected void processRequest(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - XDebug xdebug = new XDebug( request ); - request.setAttribute(QueryBuilder.XDEBUG_OBJECT, xdebug); - - // Convert old URL parameters cancer_study_id and case_id/sample_id to new frontend - // hash style URL paramters #studyId=x&caseId=y - String cancerStudyId = (String) request.getParameter("cancer_study_id"); - if (cancerStudyId != null) { - String hashUrl = "#/patient?studyId=" + cancerStudyId; - String caseId = (String) request.getParameter("case_id"); - String sampleId = (String) request.getParameter("sample_id"); - if (caseId != null) { - hashUrl += "&caseId=" + caseId; - } else if (sampleId != null) { - hashUrl += "&sampleId=" + sampleId; - } else { - response.sendError(HttpServletResponse.SC_NOT_FOUND); - return; - } - - response.setStatus(HttpServletResponse.SC_MOVED_PERMANENTLY); - String oldUrl = ((HttpServletRequest)request).getRequestURL().toString(); - response.setHeader("Location", oldUrl + hashUrl); - } else { - request.setAttribute(QueryBuilder.HTML_TITLE, "Patient"); - - RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/WEB-INF/jsp/patient_view/patient_view.jsp"); - dispatcher.forward(request, response); - } - } - - private static String getFullURL(HttpServletRequest request) { - StringBuffer requestURL = request.getRequestURL(); - String queryString = request.getQueryString(); - - if (queryString == null) { - return requestURL.toString(); - } else { - return requestURL.append('?').append(queryString).toString(); - } - } - - - // - /** - * Handles the HTTP GET method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Handles the HTTP POST method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Returns a short description of the servlet. - * @return a String containing servlet description - */ - @Override - public String getServletInfo() { - return "Short description"; - }// -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/PortalMetaData.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/PortalMetaData.java deleted file mode 100644 index a71c653173f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/PortalMetaData.java +++ /dev/null @@ -1,134 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.json.simple.JSONValue; -import org.mskcc.cbio.portal.dao.DaoSampleProfile; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.web_api.ProtocolException; -import org.springframework.context.ApplicationContext; -import org.springframework.context.support.ClassPathXmlApplicationContext; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import java.util.HashMap; -import java.util.Map; - -/** - * This servlet returns portal meta data on demand. - * - * @author Selcuk Onur Sumer - */ -public class PortalMetaData extends HttpServlet -{ - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Initializes the servlet. - * - * @throws javax.servlet.ServletException Serlvet Init Error. - */ - public void init() throws ServletException - { - super.init(); - - ApplicationContext context - = new ClassPathXmlApplicationContext("classpath:applicationContext-security.xml"); - - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest Http Servlet Request Object. - * @param httpServletResponse Http Servlet Response Object. - * @throws javax.servlet.ServletException Servlet Error. - * @throws java.io.IOException IO Error. - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException - { - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles HTTP POST Request. - * - * @param httpServletRequest Http Servlet Request Object. - * @param httpServletResponse Http Servlet Response Object. - * @throws javax.servlet.ServletException Servlet Error. - * @throws java.io.IOException IO Error. - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException - { - String cancerStudyMetadata = httpServletRequest.getParameter("cancerStudyMetaData"); - String cancerStudyName = httpServletRequest.getParameter("cancerStudyName"); - - Map metaData = new HashMap(); - - try { - if (cancerStudyMetadata != null && - !cancerStudyMetadata.equalsIgnoreCase("false")) - { - metaData.put("cancerStudyMetaData", DaoSampleProfile.metaData( - accessControl.getCancerStudies())); - } - - if (cancerStudyName != null && - !cancerStudyName.equalsIgnoreCase("false")) - { - // TODO cancerStudyName - } - } catch (DaoException e) { - throw new ServletException(e); - } catch (ProtocolException e) { - throw new ServletException(e); - } - - httpServletResponse.setContentType("application/json"); - String jsonText = JSONValue.toJSONString(metaData); - PrintWriter writer = httpServletResponse.getWriter(); - writer.write(jsonText); - writer.flush(); - writer.close(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/PortalMetaDataJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/PortalMetaDataJSON.java deleted file mode 100644 index 72a93fd5bfa..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/PortalMetaDataJSON.java +++ /dev/null @@ -1,311 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import java.util.*; -import javax.servlet.ServletException; -import javax.servlet.http.*; -import org.json.simple.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.web_api.*; - -/** - * This Servlet Returns a JSON Representation of all Cancer Studies and all Gene - * Sets within the Portal. - * - * @author Ethan Cerami. - */ -public class PortalMetaDataJSON extends HttpServlet { - - // class which process access control to cancer studies - private AccessControl accessControl; - public static final String STUDY_ID = "study_id"; - public static final String PARTIAL_STUDIES = "partial_studies"; - public static final String GENESET_ID = "geneset_id"; - public static final String PARTIAL_GENESETS = "partial_genesets"; - - /** - * Initializes the servlet. - * - * @throws ServletException Serlvet Init Error. - */ - - public void init() throws ServletException { - super.init(); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Generates a Map which will be turned into JSON representing a cancer - * study - * - * @param cancerStudy A CancerStudy object to be turned into a map - * @param partial Whether the generated Map should be "partial", i.e. - * including only the name and type of cancer of the study, or not, - * including all information about a cancer study. - * @return A Map representing the given study. - * @throws DaoException - */ - protected Map cancerStudyMap(CancerStudy cancerStudy, boolean partial) throws DaoException { - Map ret = new LinkedHashMap(); - ret.put("name", cancerStudy.getName()); - ret.put("type_of_cancer", cancerStudy.getTypeOfCancerId()); - ret.put("description", cancerStudy.getDescription()); - ArrayList caseSets = GetSampleLists.getSampleLists(cancerStudy.getCancerStudyStableId()); - int numSamples = 0; - for (SampleList pl: caseSets) { - String suffix = pl.getStableId().substring(pl.getStableId().length()-4); - if (suffix.equals("_all")) { - numSamples = pl.getSampleList().size(); - break; - } - } - ret.put("num_samples", numSamples); - - if (partial) { - ret.put("partial", "true"); - } else { - // at this point we have the study corresponding to the given ID - ArrayList geneticProfiles - = GetGeneticProfiles.getGeneticProfiles(cancerStudy.getCancerStudyStableId()); - - JSONArray jsonGenomicProfileList = new JSONArray(); - for (GeneticProfile geneticProfile : geneticProfiles) { - Map map = new LinkedHashMap(); - map.put("id", geneticProfile.getStableId()); - map.put("alteration_type", geneticProfile.getGeneticAlterationType().name()); - map.put("show_in_analysis_tab", geneticProfile.showProfileInAnalysisTab()); - map.put("name", geneticProfile.getProfileName()); - map.put("description", geneticProfile.getProfileDescription()); - map.put("datatype", geneticProfile.getDatatype()); - jsonGenomicProfileList.add(map); - } - - JSONArray jsonCaseList = new JSONArray(); - for (SampleList caseSet : caseSets) { - Map map = new LinkedHashMap(); - map.put("id", caseSet.getStableId()); - map.put("name", caseSet.getName()); - map.put("description", caseSet.getDescription()); - map.put("size", caseSet.getSampleList().size()); - jsonCaseList.add(map); - } - ret.put("citation", cancerStudy.getCitation()); - ret.put("pmid", cancerStudy.getPmid()); - ret.put("genomic_profiles", jsonGenomicProfileList); - ret.put("case_sets", jsonCaseList); - ret.put("has_mutation_data", cancerStudy.hasMutationData(geneticProfiles)); - ret.put("has_cna_data", cancerStudy.hasCnaData()); - ret.put("has_mutsig_data", cancerStudy.hasMutSigData()); - ret.put("has_gistic_data", cancerStudy.hasGisticData()); - - ret.put("partial", "false"); - } - - return ret; - } - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest Http Servlet Request Object. - * @param httpServletResponse Http Servlet Response Object. - * @throws javax.servlet.ServletException Servlet Error. - * @throws java.io.IOException IO Error. - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, - IOException { - XDebug xdebug = new XDebug(httpServletRequest); - String studyId = httpServletRequest.getParameter(STUDY_ID); - String geneSetId = httpServletRequest.getParameter(GENESET_ID); - - try { - if (geneSetId != null) { - String geneList = ""; - GeneSetUtil geneSetUtil = GeneSetUtil.getInstance(); - ArrayList geneSetList = geneSetUtil.getGeneSetList(); - for (SetOfGenes setOfGenes : geneSetList) { - if (setOfGenes.getId().replace("/", "").equals(geneSetId)) { - geneList = setOfGenes.getGeneList(); - break; - } - } - Map obj = new LinkedHashMap(); - obj.put("list", geneList); - String jsonText = JSONValue.toJSONString(obj); - PrintWriter writer = httpServletResponse.getWriter(); - writer.write(jsonText); - writer.flush(); - writer.close(); - return; - } - if (studyId != null) { - // check if it's a valid study ID first - // If not, return {} - CancerStudy cancerStudy = null; - List cancerStudiesList = accessControl.getCancerStudies(); - for (CancerStudy study : cancerStudiesList) { - if (study.getCancerStudyStableId().equals(studyId)) { - cancerStudy = study; - break; - } - } - if (cancerStudy == null) { - String jsonText = JSONValue.toJSONString(new LinkedHashMap()); - PrintWriter writer = httpServletResponse.getWriter(); - writer.write(jsonText); - writer.flush(); - writer.close(); - return; - } - // at this point we have a CancerStudy object corresponding to - // the given study - Map jsonCancerStudySubMap = cancerStudyMap(cancerStudy, false); - httpServletResponse.setContentType("application/json"); - String jsonText = JSONValue.toJSONString(jsonCancerStudySubMap); - PrintWriter writer = httpServletResponse.getWriter(); - writer.write(jsonText); - writer.flush(); - writer.close(); - } else { - Map rootMap = new LinkedHashMap(); - Map cancerStudyMap = new LinkedHashMap(); - - // Also get cancer study types and add it to the metadata - ArrayList allTypesOfCancer = DaoTypeOfCancer.getAllTypesOfCancer(); - Collections.sort(allTypesOfCancer, new Comparator() { - @Override - public int compare(TypeOfCancer typeOfCancer, TypeOfCancer typeOfCancer1) { - return typeOfCancer.getName().compareTo(typeOfCancer1.getName()); - } - }); - Map typeOfCancerMap = new HashMap<>(); - Map visibleTypeOfCancerMap = new HashMap(); - Map cancerColors = new HashMap(); - Map visibleCancerColors = new HashMap(); - Map shortNames = new HashMap(); - Map visibleShortNames = new HashMap(); - Map parentTypeOfCancer = new HashMap(); - for (TypeOfCancer typeOfCancer : allTypesOfCancer) { - typeOfCancerMap.put(typeOfCancer.getTypeOfCancerId(), typeOfCancer); - cancerColors.put(typeOfCancer.getTypeOfCancerId(), typeOfCancer.getDedicatedColor()); - shortNames.put(typeOfCancer.getTypeOfCancerId(), typeOfCancer.getShortName()); - parentTypeOfCancer.put(typeOfCancer.getTypeOfCancerId(), typeOfCancer.getParentTypeOfCancerId()); - } - - // Cancer All Cancer Studies - List cancerStudiesList = accessControl.getCancerStudies(); - - // Get all Genomic Profiles and Case Sets for each Cancer Study - rootMap.put("cancer_studies", cancerStudyMap); - String partial_studies_s = httpServletRequest.getParameter(PARTIAL_STUDIES); - - boolean full_studies_data = (partial_studies_s == null || partial_studies_s.equals("false")); - - for (CancerStudy cancerStudy : cancerStudiesList) { - //TODO - skip the dummy "all" study still being added by accessControl.getCancerStudies() above - Map jsonCancerStudySubMap = cancerStudyMap(cancerStudy, !full_studies_data); - cancerStudyMap.put(cancerStudy.getCancerStudyStableId(), jsonCancerStudySubMap); - String typeOfCancerId = cancerStudy.getTypeOfCancerId().toLowerCase(); - if (typeOfCancerMap.get(typeOfCancerId) == null) { - //should not occur if DB is on InnoDB mode with referential constraints: - throw new RuntimeException("Cancer type record not found for: " + typeOfCancerId); - } - visibleTypeOfCancerMap.put(typeOfCancerId, typeOfCancerMap.get(typeOfCancerId).getName()); - - // climb the oncotree - String parentId = typeOfCancerMap.get(typeOfCancerId).getParentTypeOfCancerId(); - String childId = typeOfCancerId; - while (!parentId.equals("tissue")) { - //validations: TODO - these validations need to be at data loading level to block - // such entries...but keeping these exceptions here to help other with troubleshooting in case of old data: - if (typeOfCancerMap.get(parentId) == null) { - //if parent type of cancer is wrong, give error: - throw new RuntimeException("Cancer type record not found for given 'parent type of cancer': " + parentId); - } - if (childId.equalsIgnoreCase(parentId)) { - //this is also an error as it causes infinite loop when building the tree - throw new RuntimeException("Cancer type and parent cancer type cannot be the same. Found: " + childId + "," + parentId); - } - visibleTypeOfCancerMap.put(parentId, typeOfCancerMap.get(parentId).getName()); - childId = parentId; - parentId = typeOfCancerMap.get(parentId).getParentTypeOfCancerId(); - } - visibleCancerColors.put(typeOfCancerId, cancerColors.get(typeOfCancerId)); - visibleShortNames.put(typeOfCancerId, shortNames.get(typeOfCancerId)); - } - - // Only put visible ones - rootMap.put("type_of_cancers", visibleTypeOfCancerMap); - rootMap.put("cancer_colors", visibleCancerColors); - rootMap.put("short_names", visibleShortNames); - rootMap.put("parent_type_of_cancers", parentTypeOfCancer); - - // Get all Gene Sets - GeneSetUtil geneSetUtil = GeneSetUtil.getInstance(); - Map jsonGeneSetMap = new LinkedHashMap(); - rootMap.put("gene_sets", jsonGeneSetMap); - ArrayList geneSetList = geneSetUtil.getGeneSetList(); - String partial_genesets_s = httpServletRequest.getParameter(PARTIAL_GENESETS); - boolean full_genesets_data = (partial_genesets_s == null || partial_genesets_s.equals("false")); - - for (SetOfGenes setOfGenes : geneSetList) { - Map geneSetMap = new LinkedHashMap(); - geneSetMap.put("name", setOfGenes.getName()); - if (full_genesets_data) { - geneSetMap.put("gene_list", setOfGenes.getGeneList()); - } else { - geneSetMap.put("gene_list", ""); - } - jsonGeneSetMap.put(setOfGenes.getId(), geneSetMap); - } - - httpServletResponse.setContentType("application/json"); - String jsonText = JSONValue.toJSONString(rootMap); - PrintWriter writer = httpServletResponse.getWriter(); - writer.write(jsonText); - writer.flush(); - writer.close(); - } - } catch (DaoException e) { - throw new ServletException(e); - } catch (ProtocolException e) { - throw new ServletException(e); - } - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/QueryBuilder.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/QueryBuilder.java deleted file mode 100644 index fd12199b816..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/QueryBuilder.java +++ /dev/null @@ -1,865 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.web_api.*; -import org.apache.commons.lang3.*; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.model.virtualstudy.VirtualStudy; -import org.mskcc.cbio.portal.model.virtualstudy.VirtualStudyData; -import org.mskcc.cbio.portal.model.virtualstudy.VirtualStudySamples; -import org.owasp.validator.html.PolicyException; - -import org.springframework.security.core.userdetails.UserDetails; - -import java.io.*; -import java.net.URLDecoder; -import java.util.*; -import java.util.concurrent.ConcurrentHashMap; -import java.util.stream.Collectors; - -import javax.servlet.*; -import javax.servlet.http.*; - -import com.fasterxml.jackson.databind.ObjectMapper; - -import java.rmi.RemoteException; - - -/** - * Central Servlet for building queries. - */ -public class QueryBuilder extends HttpServlet { - public static final String CLIENT_TRANSPOSE_MATRIX = "transpose_matrix"; - public static final String CANCER_TYPES_INTERNAL = "cancer_types"; - public static final String PROFILE_LIST_INTERNAL = "profile_list"; - public static final String CASE_SETS_INTERNAL = "case_sets"; - public static final String CANCER_STUDY_ID = "cancer_study_id"; - public static final String CANCER_STUDY_LIST = "cancer_study_list"; - public static final String HAS_SURVIVAL_DATA = "has_survival_data"; - public static final String GENETIC_PROFILE_IDS = "genetic_profile_ids"; - public static final String GENE_SET_CHOICE = "gene_set_choice"; - public static final String CASE_SET_ID = "case_set_id"; - public static final String CASE_IDS = "case_ids"; - public static final String CASE_IDS_KEY = "case_ids_key"; - public static final String SET_OF_CASE_IDS = "set_of_case_ids"; - public static final String CLINICAL_PARAM_SELECTION = "clinical_param_selection"; - public static final String GENE_LIST = "gene_list"; - public static final String GENESET_LIST = "geneset_list"; - public static final String ACTION_NAME = "Action"; - public static final String XDEBUG = "xdebug"; - public static final String ACTION_SUBMIT = "Submit"; - public static final String STEP1_ERROR_MSG = "step1_error_msg"; - public static final String STEP2_ERROR_MSG = "step2_error_msg"; - public static final String STEP3_ERROR_MSG = "step3_error_msg"; - public static final String STEP4_ERROR_MSG = "step4_error_msg"; - public static final String PROFILE_DATA_SUMMARY = "profile_data_summary"; - public static final String DOWNLOAD_LINKS = "download_links"; - public static final String OUTPUT = "output"; - public static final String HTML_TITLE = "html_title"; - public static final String TAB_INDEX = "tab_index"; - public static final String TAB_DOWNLOAD = "tab_download"; - public static final String TAB_VISUALIZE = "tab_visualize"; - public static final String USER_ERROR_MESSAGE = "user_error_message"; - public static final String ATTRIBUTE_URL_BEFORE_FORWARDING = "ATTRIBUTE_URL_BEFORE_FORWARDING"; - public static final String Z_SCORE_THRESHOLD = "Z_SCORE_THRESHOLD"; - public static final String RPPA_SCORE_THRESHOLD = "RPPA_SCORE_THRESHOLD"; - public static final String MRNA_PROFILES_SELECTED = "MRNA_PROFILES_SELECTED"; - public static final String COMPUTE_LOG_ODDS_RATIO = "COMPUTE_LOG_ODDS_RATIO"; - public static final int MUTATION_DETAIL_LIMIT = 100; - public static final String MUTATION_DETAIL_LIMIT_REACHED = "MUTATION_DETAIL_LIMIT_REACHED"; - public static final String XDEBUG_OBJECT = "xdebug_object"; - public static final String ONCO_PRINT_HTML = "oncoprint_html"; - public static final String INDEX_PAGE = "index.do"; - public static final String DATA_PRIORITY = "data_priority"; - public static final String SELECTED_PATIENT_SAMPLE_ID_MAP = "selected_patient_sample_id_map"; - public static final String DB_VERSION = "db_version"; - public static final String DB_ERROR = "db_error"; - public static final String IS_VIRTUAL_STUDY = "is_virtual_study"; - private static final String DB_CONNECT_ERROR = ("An error occurred while trying to connect to the database." + - " This could happen if the database does not contain any cancer studies."); - - private static Logger LOG = LoggerFactory.getLogger(QueryBuilder.class); - - public static final String HAS_CANCER_TYPES = "has_cancer_types"; - - private ServletXssUtil servletXssUtil; - - // class which process access control to cancer studies - private AccessControl accessControl; - - private SessionServiceUtil sessionServiceUtil = new SessionServiceUtil(); - - /** - * Initializes the servlet. - * - * @throws ServletException Serlvet Init Error. - */ - public void init() throws ServletException { - super.init(); - try { - servletXssUtil = ServletXssUtil.getInstance(); - accessControl = SpringUtil.getAccessControl(); - } catch (PolicyException e) { - throw new ServletException (e); - } - } - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest Http Servlet Request Object. - * @param httpServletResponse Http Servlet Response Object. - * @throws ServletException Servlet Error. - * @throws IOException IO Error. - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, - IOException { - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles HTTP POST Request. - * - * @param httpServletRequest Http Servlet Request Object. - * @param httpServletResponse Http Servlet Response Object. - * @throws ServletException Servlet Error. - * @throws IOException IO Error. - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, - IOException { - - XDebug xdebug = new XDebug( httpServletRequest ); - xdebug.startTimer(); - - xdebug.logMsg(this, "Attempting to initiate new user query."); - - if (httpServletRequest.getRequestURL() != null) { - httpServletRequest.setAttribute(ATTRIBUTE_URL_BEFORE_FORWARDING, - httpServletRequest.getRequestURL().toString()); - } - - - // Get User Selected Genetic Profiles - HashSet geneticProfileIdSet = getGeneticProfileIds(httpServletRequest, xdebug); - - String dbPortalExpectedSchemaVersion = null; - String dbActualSchemaVersion = null; - // Get all Cancer Types - try { - // Get User Selected Action - String action = httpServletRequest.getParameter(ACTION_NAME); - - // Get User Defined Gene List - String geneList = httpServletRequest.getParameter(GENE_LIST); - if (httpServletRequest instanceof XssRequestWrapper) { - geneList = ((XssRequestWrapper)httpServletRequest).getRawParameter(GENE_LIST); - } - geneList = servletXssUtil.getCleanInput(geneList); - httpServletRequest.setAttribute(GENE_LIST, geneList); - - // Get data priority - Integer dataTypePriority; - try { - dataTypePriority - = Integer.parseInt(httpServletRequest.getParameter(DATA_PRIORITY).trim()); - } catch (NumberFormatException | NullPointerException e) { - dataTypePriority = 0; - } - httpServletRequest.setAttribute(DATA_PRIORITY, dataTypePriority); - - httpServletRequest.setAttribute(XDEBUG_OBJECT, xdebug); - - dbPortalExpectedSchemaVersion = GlobalProperties.getDbVersion(); - dbActualSchemaVersion = DaoInfo.getVersion(); - LOG.info("version - "+dbPortalExpectedSchemaVersion); - LOG.info("version - "+dbActualSchemaVersion); -// if (!dbPortalExpectedSchemaVersion.equals(dbActualSchemaVersion)) -// { -// String extraMessage = ""; -// //extra message for the cases where property is missing (will happen often in transition period to this new versioning model): -// if (dbPortalExpectedSchemaVersion.equals("0")) { -// extraMessage = "The db.version property also not found in your portal.properties file. This new property needs to be added by the administrator."; -// } -// String finalMessage = "Current DB schema version: " + dbActualSchemaVersion + "
    " + -// "DB schema version expected by Portal: " + dbPortalExpectedSchemaVersion + "
    " + extraMessage; -// LOG.warn(finalMessage); -// if (!GlobalProperties.isSuppressSchemaVersionMismatchErrors()) { -// throw new DbVersionException(finalMessage); -// } -// } - - // Get the example study queries configured as a skin property - String[] exampleStudyQueries = GlobalProperties.getExampleStudyQueries().split("\n"); - httpServletRequest.setAttribute("exampleStudyQueries", exampleStudyQueries); - - // Validate query -// boolean errorsExist = validateForm(action, cohortDetails, -// geneticProfileIdSet, sampleSetId, sampleIds, httpServletRequest); - boolean errorsExist = false; - - // Query single / multiple studies? - // --> Single study - // -----> regular study - // -----> virtual study - // --> Multiple studies - // -----> always build temporary cohort - String cancerStudyId = httpServletRequest.getParameter(CANCER_STUDY_ID); - String cancerStudyList = httpServletRequest.getParameter(CANCER_STUDY_LIST); - Boolean _isVirtualStudy = false; - Boolean addProfiles = false; - - //this is a common case for most of the requests from study view when the there is only one study - if (cancerStudyId != null && cancerStudyId.equals("all") && cancerStudyList != null && cancerStudyList.split(",").length == 1) { - cancerStudyId = cancerStudyList.split(",")[0]; - addProfiles = true; - } - - //redirect requests with cancerStudyId="all" and cancerStudyList="all" to home page - // handle different possible scenarios in https://github.com/cBioPortal/cbioportal/issues/3431 - if (!(cancerStudyId != null - && cancerStudyId.equals("all") - && cancerStudyList != null - && cancerStudyList.equals("all") )) { - - if (cancerStudyId != null || cancerStudyList != null) { - CancerStudy cancerStudy = null; - if(cancerStudyId != null) { - cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); - } - - //single regular study - if(cancerStudy != null) { - cancerStudyList = null; - if(addProfiles) { - cancerStudy.getGeneticProfiles(); - geneticProfileIdSet = new HashSet(); - GeneticProfile cnaProfile = cancerStudy.getCopyNumberAlterationProfile(true); - GeneticProfile mutationProfile = cancerStudy.getMutationProfile(); - if(cnaProfile != null) { - geneticProfileIdSet.add(cnaProfile.getStableId()); - } - if(mutationProfile != null) { - geneticProfileIdSet.add(mutationProfile.getStableId()); - } - httpServletRequest.setAttribute(GENETIC_PROFILE_IDS, geneticProfileIdSet); - } - } - //multiple and virtual study - else { - _isVirtualStudy = true; - if (cancerStudyId != null && !cancerStudyId.equals("all")) { - cancerStudyList = null; - } else { - if ((cancerStudyId == null || cancerStudyId.equals("all")) - && (cancerStudyList!= null && !cancerStudyList.equals("all"))) { - cancerStudyId = "all"; - } - } - - } - httpServletRequest.setAttribute(IS_VIRTUAL_STUDY, _isVirtualStudy); - if(httpServletRequest.getParameter(CASE_SET_ID) != null) { - httpServletRequest.setAttribute(CASE_SET_ID, httpServletRequest.getParameter(CASE_SET_ID)); - if (httpServletRequest.getParameter(CASE_SET_ID).equals("-1")) { - httpServletRequest - .setAttribute(CASE_IDS,httpServletRequest - .getParameter(CASE_IDS) - .replaceAll("\\\\n", "\n") - .replaceAll("\\\\t", "\t")); - } - - } - } - } - httpServletRequest.setAttribute(CANCER_STUDY_ID, cancerStudyId); - httpServletRequest.setAttribute(CANCER_STUDY_LIST, cancerStudyList); - - if(cancerStudyId != null) { - String queriedStudies = cancerStudyId; - if (cancerStudyId.equals("all") - && cancerStudyList != null) { - queriedStudies = cancerStudyList; - } - - Set inputCohortIds = new HashSet<>(Arrays.asList(queriedStudies.split(","))); - Set studies = getStudies(inputCohortIds); - Set unKnownStudies = new HashSet<>(); - - if(studies.isEmpty()) { - unKnownStudies = inputCohortIds; - } else { - unKnownStudies = - studies - .stream() - .filter(obj -> { - if(inputCohortIds.contains(obj.getId())) { - for (VirtualStudySamples _study : obj.getData().getStudies()) { - try { - if (accessControl.isAccessibleCancerStudy(_study.getId()).size() != 1) - return true; - } catch (Exception e) { - return true; - } - } - return false; - } else { - return true; - } - }) - .map(obj -> obj.getId()) - .collect(Collectors.toSet()); - } - - errorsExist = errorsExist || unKnownStudies.size() > 0; - // Dispatch to query result page - if (action != null && action.equals(ACTION_SUBMIT) && (!errorsExist)) { - - Map> studySampleMap = new HashMap<>(); - - studies - .stream() - .forEach(obj -> { - for (VirtualStudySamples cohortStudyCasesMap : obj.getData().getStudies()) { - if (studySampleMap.containsKey(cohortStudyCasesMap.getId())) { - String _sharedStudyId = cohortStudyCasesMap.getId(); - if (studySampleMap.get(_sharedStudyId).size() != 0) { // original entry does not contain all samples - Set mergedSet = mergeSets(studySampleMap.get(_sharedStudyId), cohortStudyCasesMap.getSamples()); - studySampleMap.put(cohortStudyCasesMap.getId(), mergedSet); - } // otherwise keep the value as empty set - //create new entry/key - } else { - studySampleMap.put(cohortStudyCasesMap.getId(), cohortStudyCasesMap.getSamples()); - } - } - }); - - processData(studySampleMap, geneList, geneticProfileIdSet, - httpServletRequest.getParameter(CASE_SET_ID), - httpServletRequest.getParameter(CASE_IDS_KEY), - httpServletRequest.getParameter(CASE_IDS), - dataTypePriority, getServletContext(), - httpServletRequest, httpServletResponse, xdebug); - // Dispatch to home page (main query form) - } else { - if (errorsExist) { - httpServletRequest.setAttribute(QueryBuilder.USER_ERROR_MESSAGE, "Please fix the errors below."); - } - RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/WEB-INF/jsp/index.jsp"); - dispatcher.forward(httpServletRequest, httpServletResponse); - } - } else { - RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/WEB-INF/jsp/index.jsp"); - dispatcher.forward(httpServletRequest, httpServletResponse); - } - - - - } catch (RemoteException e) { - xdebug.logMsg(this, "Got Remote Exception: " + e.getMessage()); - forwardToErrorPage(httpServletRequest, httpServletResponse, - DB_CONNECT_ERROR, xdebug); - } catch (DaoException e) { - String errorMessage = ""; - if (dbPortalExpectedSchemaVersion != null && !dbPortalExpectedSchemaVersion.equals(dbActualSchemaVersion)) { - errorMessage += "Error could also be related to incompatible DB schema version: DB is at schema version " + dbActualSchemaVersion + - " while portal expects schema version " + dbPortalExpectedSchemaVersion + ". "; - } - errorMessage += "Got Database Exception: " + e.getMessage(); - xdebug.logMsg(this, errorMessage); - forwardToErrorPage(httpServletRequest, httpServletResponse, - DB_CONNECT_ERROR + " " + errorMessage, xdebug); -// } catch (DbVersionException e) { -// String errorMessage = "Mismatch between current DB schema version and DB schema version expected by portal. " + e.getMessage(); -// xdebug.logMsg(this, errorMessage); -// forwardToErrorPage(httpServletRequest, httpServletResponse, -// errorMessage, xdebug); - } - /*catch (ProtocolException e) { - xdebug.logMsg(this, "Got Protocol Exception: " + e.getMessage()); - forwardToErrorPage(httpServletRequest, httpServletResponse, - DB_CONNECT_ERROR, xdebug); - }*/ - - } - - /** - * Gets all Genetic Profile IDs. - * - * These values are passed with parameter names like this: - * - * genetic_profile_ids - * genetic_profile_ids_MUTATION - * genetic_profile_ids_MUTATION_EXTENDED - * genetic_profile_ids_COPY_NUMBER_ALTERATION - * genetic_profile_ids_MRNA_EXPRESSION - * - * - * @param httpServletRequest HTTPServlet Request. - * @return HashSet of GeneticProfileIDs. - */ - private HashSet getGeneticProfileIds(HttpServletRequest httpServletRequest, - XDebug xdebug) { - HashSet geneticProfileIdSet = new HashSet(); - Enumeration nameEnumeration = httpServletRequest.getParameterNames(); - while (nameEnumeration.hasMoreElements()) { - String currentName = (String) nameEnumeration.nextElement(); - if (currentName.startsWith(GENETIC_PROFILE_IDS)) { - String geneticProfileIds[] = httpServletRequest.getParameterValues(currentName); - if (geneticProfileIds != null && geneticProfileIds.length > 0) { - for (String geneticProfileId : geneticProfileIds) { - xdebug.logMsg (this, "Received Genetic Profile ID: " - + currentName + ": " + geneticProfileId); - geneticProfileIdSet.add(geneticProfileId); - } - } - } - } - httpServletRequest.setAttribute(GENETIC_PROFILE_IDS, geneticProfileIdSet); - return geneticProfileIdSet; - } - - /** - * process a good request - * - */ - private void processData(Map> inputStudySampleMap, - String geneList, - HashSet geneticProfileIdSet, - String sampleSetId, - String sampleIdsKey, - String sampleIdsStr, //raw string from "user custom case ids" box - Integer dataTypePriority, - ServletContext servletContext, - HttpServletRequest request, - HttpServletResponse response, - XDebug xdebug) throws IOException, ServletException, DaoException { - - String sampleSetName = "User-defined Patient List"; - String sampleSetDescription = "User defined patient list."; - HashMap geneticProfileMap = new HashMap<>(); - Map> studySampleMap = new HashMap<>(); - Boolean showIGVtab = false; - Boolean hasMrna = false; - Boolean hasMethylation = false; - Boolean hasCopyNo = false; - Boolean hasSurvival = false; - String decodedGeneList = URLDecoder.decode(geneList, "UTF-8"); - String singleStudyId = (String) request.getAttribute(CANCER_STUDY_ID); - if (inputStudySampleMap.keySet().size() == 1 && inputStudySampleMap.containsKey(singleStudyId)) { // single study - String _cancerStudyId = inputStudySampleMap.keySet().iterator().next(); - if (!sampleSetId.equals("-1")) { - for (SampleList sampleSet : GetSampleLists.getSampleLists(_cancerStudyId)) { - if (sampleSet.getStableId().equals(sampleSetId)) { - sampleIdsStr = sampleSet.getSampleListAsString(); - sampleSetName = sampleSet.getName(); - sampleSetDescription = sampleSet.getDescription(); - break; - } - } - List samplesList = new ArrayList<>(Arrays.asList(sampleIdsStr.split(" "))); - studySampleMap.put(_cancerStudyId,samplesList); - } else if (sampleSetId.equals("-1") && sampleIdsKey != null) { - sampleIdsStr = SampleSetUtil.getSampleIds(sampleIdsKey); - List samplesList = new ArrayList<>(Arrays.asList(sampleIdsStr.split(" "))); - studySampleMap.put(_cancerStudyId,samplesList); - } else if (sampleSetId.equals("-1") && sampleIdsKey == null && - sampleIdsStr != null && sampleIdsStr.length() > 0) { - studySampleMap = parseCaseIdsTextBoxStr(sampleIdsStr); - } else { - redirectStudyUnavailable(request, response); - } - } else { // multiple studies OR single virtual study - if (sampleSetId.equals("-1") && sampleIdsStr != null && sampleIdsStr.length() > 0) { //using user customized case list - studySampleMap = parseCaseIdsTextBoxStr(sampleIdsStr); - } else { - - SampleSet sampleSet = SampleSet.get(sampleSetId); - sampleSet = (sampleSet == null) ? SampleSet.ALL : sampleSet; - - request.setAttribute(CASE_SET_ID, sampleSet.getSampleSet()); - - final SampleListCategory sampleListCategory = sampleSet.getSampleListCategory(); - final Map> studySampleMapConcurrent = new ConcurrentHashMap<>(); - - inputStudySampleMap.keySet().parallelStream().forEach((String _cancerStudyId) -> { - try { - for(SampleList sampleList:GetSampleLists.getSampleLists(_cancerStudyId)) { - if (sampleList.getSampleListCategory().equals(sampleListCategory) - || (sampleListCategory.equals(SampleListCategory.ALL_CASES_IN_STUDY) - && sampleList.getStableId().equals(_cancerStudyId + "_all"))) { - List sampleIds = sampleList.getSampleList(); - if (inputStudySampleMap.get(_cancerStudyId).size() > 0) { - sampleIds.retainAll(inputStudySampleMap.get(_cancerStudyId)); - } - studySampleMapConcurrent.put(_cancerStudyId, sampleIds); - break; - } - } - } catch (DaoException e) { - e.printStackTrace(); - return; - } - }); - studySampleMap = studySampleMapConcurrent; - } - } - - //always set sampleIdsKey when there is only one real study in query - if (studySampleMap.keySet().size() == 1 && sampleIdsKey == null) { - String sampleIds = studySampleMap - .values() - .stream() - .flatMap(List::stream) - .collect(Collectors.joining("\n")); - sampleIdsKey = SampleSetUtil.shortenSampleIds(sampleIds); - } - - - // retrieve genetic profiles - for (String cancerStudyId : inputStudySampleMap.keySet()) { - CancerStudy selectedCancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); - ArrayList geneticProfileList = GetGeneticProfiles.getGeneticProfiles(cancerStudyId); - showIGVtab = showIGVtab || selectedCancerStudy.hasCnaSegmentData(); - hasMrna = hasMrna || countProfiles(geneticProfileList, GeneticAlterationType.MRNA_EXPRESSION) > 0; - hasMethylation = hasMethylation || countProfiles(geneticProfileList, GeneticAlterationType.METHYLATION) > 0; - hasCopyNo = hasCopyNo || countProfiles(geneticProfileList, GeneticAlterationType.COPY_NUMBER_ALTERATION) > 0; - hasSurvival = hasSurvival || selectedCancerStudy.hasSurvivalData(); - for(String profileId : geneticProfileIdSet){ - if (profileId != null && profileId.length() != 0) - geneticProfileMap.put(profileId, GeneticProfileUtil.getProfile(profileId, geneticProfileList)); - } - if (inputStudySampleMap.size()>1 || !inputStudySampleMap.containsKey(singleStudyId)) { - HashMap defaultGeneticProfileSet = null; - CategorizedGeneticProfileSet categorizedGeneticProfileSet = new CategorizedGeneticProfileSet( - geneticProfileList); - if (dataTypePriority != null) { - // Get the default genomic profiles - switch (dataTypePriority) { - case 2: - defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultCopyNumberMap(); - break; - case 1: - defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultMutationMap(); - break; - case 0: - default: - defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultMutationAndCopyNumberMap(); - } - } else { - defaultGeneticProfileSet = categorizedGeneticProfileSet.getDefaultMutationAndCopyNumberMap(); - } - // geneticProfileMap.putAll(defaultGeneticProfileSet); - for (String pId: defaultGeneticProfileSet.keySet()) { - geneticProfileMap.put(pId, defaultGeneticProfileSet.get(pId)); - } - - } - } - // this will create a key even if the patient set is a predefined set, - // because it is required to build a patient id string in any case - request.setAttribute(CASE_IDS_KEY, sampleIdsKey); - request.setAttribute("case_set_name", sampleSetName); - request.setAttribute("case_set_description", sampleSetDescription); - request.setAttribute("showIGVtab", showIGVtab); - request.setAttribute("hasMrna", hasMrna); - request.setAttribute("hasMethylation", hasMethylation); - request.setAttribute("hasCopyNo", hasCopyNo); - request.setAttribute("hasSurvival", hasSurvival); - - ObjectMapper mapper = new ObjectMapper(); - String studySampleMapString = mapper.writeValueAsString(studySampleMap); - request.setAttribute("STUDY_SAMPLE_MAP", studySampleMapString); - - // retrieve information about the cancer types - List samples = new ArrayList<>(); - for (List samplesList : studySampleMap.values()) { - samples.addAll(samplesList); - } - Boolean showCancerTypesSummary = false; - Map> cancerTypesMap = DaoClinicalData.getCancerTypeInfoBySamples(samples); - if(cancerTypesMap.keySet().size() > 1) { - showCancerTypesSummary = true; - } - else if (cancerTypesMap.keySet().size() == 1 && cancerTypesMap.values().iterator().next().size() > 1 ) { - showCancerTypesSummary = true; - } - request.setAttribute(HAS_CANCER_TYPES, showCancerTypesSummary); - - String tabIndex = request.getParameter(QueryBuilder.TAB_INDEX); - if (tabIndex != null && tabIndex.equals(QueryBuilder.TAB_VISUALIZE)) { - HashSet geneticProfileIds = new HashSet(geneticProfileMap.keySet()); - ArrayList geneticProfiles = new ArrayList<>(geneticProfileMap.values()); - double zScoreThreshold = ZScoreUtil.getZScore(geneticProfileIds, geneticProfiles, request); - double rppaScoreThreshold = ZScoreUtil.getRPPAScore(request); - request.setAttribute(GENETIC_PROFILE_IDS, geneticProfileIds); - request.setAttribute(Z_SCORE_THRESHOLD, zScoreThreshold); - request.setAttribute(RPPA_SCORE_THRESHOLD, rppaScoreThreshold); - - // Store download links in session (for possible future retrieval). - RequestDispatcher dispatcher = - getServletContext().getRequestDispatcher("/WEB-INF/jsp/visualize.jsp"); - dispatcher.forward(request, response); - } else if (tabIndex != null && tabIndex.equals(QueryBuilder.TAB_DOWNLOAD)) { - // include downloadable data in session - ArrayList downloadLinkSet = new ArrayList<>(); - for(GeneticProfile profile : geneticProfileMap.values()){ - String _sampleIdsStr = StringUtils.join(studySampleMap.get(DaoCancerStudy.getCancerStudyByInternalId(profile.getCancerStudyId()).getCancerStudyStableId()), " "); - if (_sampleIdsStr != null && _sampleIdsStr.length() != 0) { - GetProfileData remoteCall = - new GetProfileData(profile, new ArrayList<>(Arrays.asList(decodedGeneList.split("( )|(\\n)"))), _sampleIdsStr); - DownloadLink downloadLink = new DownloadLink(profile, new ArrayList<>(Arrays.asList(decodedGeneList.split("( )|(\\n)"))), sampleIdsStr, - remoteCall.getRawContent()); - downloadLinkSet.add(downloadLink); - } - } - request.getSession().setAttribute(DOWNLOAD_LINKS, downloadLinkSet); - - ShowData.showDataAtSpecifiedIndex(servletContext, request, - response, 0, xdebug); - } - } - - private void redirectStudyUnavailable(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException - { - request.setAttribute(QueryBuilder.USER_ERROR_MESSAGE, "The selected cancer study is currently being updated, please try back later."); - RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/WEB-INF/jsp/index.jsp"); - dispatcher.forward(request, response); - } - - private Map> parseCaseIdsTextBoxStr(String _inputStr) { - Map> _resultMap = new HashMap<>(); - _inputStr = _inputStr.replaceAll("\\\\n", "\n").replaceAll("\\\\t", "\t"); - _inputStr = _inputStr.replaceAll("\n", "+").replaceAll("\t", ":"); - String[] _segs = _inputStr.split("\\+"); // _seg => a line in "Case Ids" box: study_id:sampleId - for (String _seg: _segs) { - String _studyId = _seg.split(":")[0]; - String _sampleId = _seg.split(":")[1]; - if (_resultMap.containsKey(_studyId)) { - List _tmpSampleList = _resultMap.get(_studyId); - if (!_tmpSampleList.contains(_sampleId)) { - _tmpSampleList.add(_sampleId); - } - _resultMap.put(_studyId, _tmpSampleList); - } else { - List _tmpSampleList = new ArrayList<>(Arrays.asList(_sampleId)); - _resultMap.put(_studyId, _tmpSampleList); - } - } - return _resultMap; - } - - /** - * validate the portal web input form. - * @throws ProtocolException - */ - private boolean validateForm(String action, - Map> studySampleMap, - HashSet geneticProfileIdSet, - String sampleSetId, String sampleIds, - HttpServletRequest httpServletRequest) throws DaoException { - boolean errorsExist = false; - String tabIndex = httpServletRequest.getParameter(QueryBuilder.TAB_INDEX); - if (action != null) { - if (action.equals(ACTION_SUBMIT)) { - - if (studySampleMap.keySet().size() == 0) { - httpServletRequest.setAttribute(STEP1_ERROR_MSG, - //"You are not authorized to view the cancer study with id: '" + - //cohortDetails.getCohortId() + "'. "); - "You are not authorized to view the cancer study."); //TODO: how to specify the Id(s) here? - errorsExist = true; - } - else { - UserDetails ud = accessControl.getUserDetails(); - if (ud != null) { - LOG.info("QueryBuilder.validateForm: Query initiated by user: " + ud.getUsername()); - } - } - - if(studySampleMap.keySet().size() == 1) { - - if (geneticProfileIdSet.size() == 0) { - if (tabIndex == null || tabIndex.equals(QueryBuilder.TAB_DOWNLOAD)) { - httpServletRequest.setAttribute(STEP2_ERROR_MSG, - "Please select a genetic profile below. "); - } else { - httpServletRequest.setAttribute(STEP2_ERROR_MSG, - "Please select one or more genetic profiles below. "); - } - errorsExist = true; - } - - // user-defined patient set - if (sampleIds != null && - sampleSetId != null && - sampleSetId.equals("-1")) - { - // empty patient list - if (sampleIds.trim().length() == 0) - { - httpServletRequest.setAttribute(STEP3_ERROR_MSG, - "Please enter at least one ID below. "); - - errorsExist = true; - } - else - { - List invalidSamples = SampleSetUtil - .validateSampleSet( - studySampleMap.keySet().iterator().next(), - sampleIds); - - String sampleSetErrMsg = "Invalid samples(s) for the selected cancer study:"; - - // non-empty list, but contains invalid patient IDs - if (invalidSamples.size() > 0) - { - // append patient ids to the message - for (String sampleId : invalidSamples) - { - sampleSetErrMsg += " " + sampleId; - } - - httpServletRequest.setAttribute(STEP3_ERROR_MSG, - sampleSetErrMsg); - - errorsExist = true; - } - } - } - - - } - } - } - - return errorsExist; - } - - private void forwardToErrorPage(HttpServletRequest request, HttpServletResponse response, - String userMessage, XDebug xdebug) - throws ServletException, IOException { - request.setAttribute("xdebug_object", xdebug); - request.setAttribute(USER_ERROR_MESSAGE, userMessage); - RequestDispatcher dispatcher = - getServletContext().getRequestDispatcher("/WEB-INF/jsp/error.jsp"); - dispatcher.forward(request, response); - } - - private int countProfiles (ArrayList profileList, GeneticAlterationType type) { - int counter = 0; - for (int i = 0; i < profileList.size(); i++) { - GeneticProfile profile = profileList.get(i); - if (profile.getGeneticAlterationType() == type) { - counter++; - } - } - return counter; - } - - private Set getStudies(Set inputCohortIds) throws DaoException { - Set studies = new HashSet<>(); - SessionServiceUtil sessionServiceUtil = new SessionServiceUtil(); - for (String inputCohortId: inputCohortIds) { - try { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(inputCohortId); - // is virtual study - if (cancerStudy == null) { - VirtualStudy virtualStudy = sessionServiceUtil.getVirtualStudyData(inputCohortId); - if (virtualStudy != null && virtualStudy.getData().getStudies().size() > 0) { - studies.add(virtualStudy); - } - // is regular study - } else { - VirtualStudy study = new VirtualStudy(); - VirtualStudySamples studySamples = new VirtualStudySamples(); - studySamples.setId(inputCohortId); - studySamples.setSamples(new HashSet<>()); - VirtualStudyData studyData = new VirtualStudyData(); - studyData.setStudies(Collections.singleton(studySamples)); - study.setId(cancerStudy.getCancerStudyStableId()); - study.setData(studyData); - studies.add(study); - } - } catch (DaoException e) { - throw e; - } - } - return studies; - } - - private Set mergeSets(Set a, Set b) { - Set resultSet = new HashSet(a.size() + b.size()); - for (String i : a) { resultSet.add(i); } - for (String i : b) { resultSet.add(i); } - return resultSet; - } -} - -enum SampleSet { - ALL("all",SampleListCategory.ALL_CASES_IN_STUDY), - W_MUT_CNA("w_mut_cna",SampleListCategory.ALL_CASES_WITH_MUTATION_AND_CNA_DATA), - W_MUT("w_mut",SampleListCategory.ALL_CASES_WITH_MUTATION_DATA), - W_CNA("w_cna",SampleListCategory.ALL_CASES_WITH_CNA_DATA); - - private SampleListCategory sampleListCategory; - - private String sampleSet; - - SampleSet(String sampleSet, SampleListCategory sampleListCategory) { - this.sampleSet = sampleSet; - this.sampleListCategory = sampleListCategory; - } - - public String getSampleSet() { - return sampleSet; - } - - public SampleListCategory getSampleListCategory() { - return sampleListCategory; - } - - public static SampleSet get(String sampleSet) { - return Arrays.stream(values()) - .filter(obj -> obj.sampleSet.equalsIgnoreCase(sampleSet)) - .findFirst() - .orElse(null); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/ServletXssUtil.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/ServletXssUtil.java deleted file mode 100644 index ea5dc832075..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/ServletXssUtil.java +++ /dev/null @@ -1,173 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.apache.commons.text.StringEscapeUtils; -import org.owasp.validator.html.Policy; -import org.owasp.validator.html.AntiSamy; -import org.owasp.validator.html.PolicyException; -import org.owasp.validator.html.ScanException; -import org.owasp.validator.html.CleanResults; - -import javax.servlet.http.HttpServletRequest; -import java.io.InputStream; - -/** - * Servlet Cross Site Scripting Util Class. - */ -public class ServletXssUtil { - private static ServletXssUtil servletUtil; - private Policy policy; - private AntiSamy as; - - /** - * Private Constructor. - * - * @throws PolicyException Policy Error. - */ - private ServletXssUtil() throws PolicyException { - InputStream inputStream = getClass().getClassLoader().getResourceAsStream("antisamy.xml"); - policy = Policy.getInstance(inputStream); - as = new AntiSamy(); - } - - /** - * Gets Global Singleton. - * @return Global Singleton of Servlet Util. - * @throws PolicyException Policy Exception. - */ - public static ServletXssUtil getInstance() throws PolicyException { - if (servletUtil == null) { - servletUtil = new ServletXssUtil(); - } - return servletUtil; - } - - /** - * Gets Clean XSS User Input. - * - * @param httpServletRequest Http Servlet Request. - * @param parameter Parameter. - * @return Clean Input, minus XSS Scripting Attack Problems. - * @throws ScanException Scan Error. - * @throws PolicyException Policy Error. - */ - public String getCleanInput (HttpServletRequest httpServletRequest, String parameter) { - String dirtyInput = httpServletRequest.getParameter(parameter); - try { - if (dirtyInput != null) { - CleanResults cr = as.scan(dirtyInput, policy); - return cr.getCleanHTML(); - } else { - return null; - } - } catch (ScanException e) { - System.err.println(e.getMessage()); - return null; - } catch (PolicyException e) { - System.err.println(e.getMessage()); - return null; - } - } - - /** - * Gets Clean XSS User Input. - * - * @param dirty Dirty User Input. - * @return Clean User Input. - */ - public String getCleanInput (String dirty) { - try { - CleanResults cr = as.scan(dirty, policy); - return cr.getCleanHTML(); - } catch (ScanException e) { - return null; - } catch (PolicyException e) { - return null; - } - } - - /** - * Gets Cleaner XSS User Input. In addition to applying antisamy rules, - * this method also escapes JavaScript characters. - * - * @param dirty Dirty User Input. - * @return Clean User Input. - */ - public String getCleanerInput(String dirty) - { - String clean = this.getCleanInput(dirty); - - if (clean != null) - { - clean = this.getJavascriptFreeInput(clean); - } - - return clean; - } - - /** - * /** - * Gets Cleaner XSS User Input. In addition to applying antisamy rules, - * this method also escapes JavaScript characters. - * - * @param request HTTP servlet request - * @param parameter name of the parameter - * @return cleaned and escaped user input - */ - public String getCleanerInput(HttpServletRequest request, String parameter) - { - String dirty = request.getParameter(parameter); - - return this.getCleanerInput(dirty); - } - - /** - * Escapes JavaScript characters for the given string. Also strips all - * occurrences of the word "javascript" from the string. - * - * @param dirty unescaped input string - * @return JavaScript escaped string - */ - public String getJavascriptFreeInput(String dirty) - { - String clean = null; - - if (dirty != null) - { - clean = StringEscapeUtils.escapeEcmaScript(dirty).replaceAll("(?i)javascript", ""); - } - - return clean; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/ShowData.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/ShowData.java deleted file mode 100644 index 34cc7cd6eef..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/ShowData.java +++ /dev/null @@ -1,180 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.mskcc.cbio.portal.model.DownloadLink; -import org.mskcc.cbio.portal.util.XDebug; -import org.owasp.validator.html.PolicyException; - -import javax.servlet.RequestDispatcher; -import javax.servlet.ServletContext; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import java.util.ArrayList; - -/** - * Shows Content Already Retrieved from the CGDS Server. - */ -public class ShowData extends HttpServlet { - public static final String INDEX = "index"; - - /** - * Handles HTTP GET Request. - * - * @param request Http Servlet Request Object. - * @param response Http Servlet Response Object. - * @throws javax.servlet.ServletException Servlet Error. - * @throws java.io.IOException IO Error. - */ - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - XDebug xdebug = new XDebug( request ); - showData(getServletContext(), request, response, xdebug); - } - - private static void showData(ServletContext servletContext, HttpServletRequest request, - HttpServletResponse response, XDebug xdebug) - throws ServletException, IOException { - String index = request.getParameter(INDEX); - if (index == null || index.trim().length() == 0) { - forwardToErrorPage(servletContext, request, response, xdebug); - } else { - try { - int i = Integer.parseInt(index); - showDataAtSpecifiedIndex(servletContext, request, response, i, xdebug); - } catch (NumberFormatException e) { - forwardToErrorPage(servletContext, request, response, xdebug); - } - } - } - - /** - * Shows data at specified index value. - * - * @param servletContext ServletContext Object. - * @param request Servlet Request. - * @param response Servlet Response. - * @param i Index i. - * @throws IOException IO Error. - * @throws ServletException Servlet Error. - */ - public static void showDataAtSpecifiedIndex(ServletContext servletContext, - HttpServletRequest request, HttpServletResponse response, int i, - XDebug xdebug) - throws IOException, ServletException { - ArrayList downloadLinkList = (ArrayList) - request.getSession().getAttribute(QueryBuilder.DOWNLOAD_LINKS); - if (downloadLinkList == null || downloadLinkList.size() == 0) { - xdebug.logMsg(xdebug, "Download link list is null or empty"); - forwardToErrorPage(servletContext, request, response, xdebug); - } else { - try { - DownloadLink downloadLink = downloadLinkList.get(i); - PrintWriter writer = response.getWriter(); - response.setContentType("text/plain"); - response.setHeader("Content-Disposition", "attachment;filename=cBioPortal_data.txt"); - String transposeStr = request.getParameter( - QueryBuilder.CLIENT_TRANSPOSE_MATRIX); - boolean transpose = false; - if (transposeStr != null) { - transpose = true; - } - outputData(downloadLink.getContent(), writer, transpose, xdebug); - writer.flush(); - } catch (ArrayIndexOutOfBoundsException e) { - xdebug.logMsg(xdebug, "Array Index out of bounds: " + e.getMessage()); - forwardToErrorPage(servletContext, request, response, xdebug); - } - } - } - - private static void outputData(String content, PrintWriter writer, boolean transpose, - XDebug xdebug) { - String lines[] = content.split("\n"); - - int numRows = 0; - int numCols = 0; - ArrayList dataLines = new ArrayList(); - for (String line : lines) { - if (line.startsWith("#")) { - writer.write(line + "\n"); - } else { - dataLines.add(line.trim()); - numRows++; - if (numRows == 1) { - String parts[] = line.split("\\s"); - numCols = parts.length; - } - } - } - xdebug.logMsg(xdebug, "Data matrix is size: " + numRows + " x " + numCols + "."); - String matrix[][] = new String[numRows][numCols]; - for (int i = 0; i < dataLines.size(); i++) { - String line = dataLines.get(i); - String parts[] = line.split("\t"); - for (int j = 0; j < parts.length; j++) { - matrix[i][j] = parts[j]; - } - } - - if (!transpose) { - for (int i = 0; i < numRows; i++) { - for (int j = 0; j < numCols; j++) { - writer.write(matrix[i][j] + "\t"); - } - writer.write("\n"); - } - } else { - for (int i = 0; i < numCols; i++) { - for (int j = 0; j < numRows; j++) { - writer.write(matrix[j][i] + "\t"); - } - writer.write("\n"); - } - } - - } - - private static void forwardToErrorPage(ServletContext servletContext, - HttpServletRequest request, HttpServletResponse response, XDebug xdebug) - throws ServletException, IOException { - request.setAttribute("xdebug_object", xdebug); - RequestDispatcher dispatcher = - servletContext.getRequestDispatcher("/WEB-INF/jsp/error.jsp"); - dispatcher.forward(request, response); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/SimilarPatientsJSON.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/SimilarPatientsJSON.java deleted file mode 100644 index e9b1acc7b9b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/SimilarPatientsJSON.java +++ /dev/null @@ -1,208 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import java.util.*; - -import javax.servlet.ServletConfig; -import javax.servlet.ServletException; -import javax.servlet.http.*; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.json.simple.*; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.util.SpringUtil; - -/** - * - * @author jj - */ -public class SimilarPatientsJSON extends HttpServlet { - private static Logger logger = LoggerFactory.getLogger(SimilarPatientsJSON.class); - - public static final String MUTATION = "mutation"; - public static final String CNA = "cna"; - - // class which process access control to cancer studies - private AccessControl accessControl; - - @Override - public void init(ServletConfig config) throws ServletException { - super.init(config); - accessControl = SpringUtil.getAccessControl(); - } - - /** - * Processes requests for both HTTP GET and POST methods. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - protected void processRequest(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - JSONArray table = new JSONArray(); - - String strMutations = request.getParameter(MUTATION); - String strCna = request.getParameter(CNA); - String sample = request.getParameter(PatientView.SAMPLE_ID); - String cancerStudyId = request.getParameter(QueryBuilder.CANCER_STUDY_ID); - - try { - if (cancerStudyId != null) { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); - if (cancerStudy != null - && accessControl.isAccessibleCancerStudy(cancerStudy.getCancerStudyStableId()).size() == 1) { - Sample _sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudy.getInternalId(), sample); - if (_sample!=null) { - Map> similarMutations; - if (strMutations==null||strMutations.isEmpty()) { - similarMutations = Collections.emptyMap(); - } else { - similarMutations = DaoMutation.getSimilarSamplesWithMutationsByKeywords(strMutations); - similarMutations.remove(_sample); - } - Map> similarCnas; - if (strCna==null||strCna.isEmpty()) { - similarCnas = Collections.emptyMap(); - } else { - similarCnas = DaoCnaEvent.getSamplesWithAlterations(strCna); - similarCnas.remove(_sample); - } - - export(table, similarMutations, similarCnas); - } - } - } - } catch (DaoException ex) { - throw new ServletException(ex); - } - - PrintWriter out = response.getWriter(); - response.setContentType("application/json"); - try { - JSONValue.writeJSONString(table, out); - } finally { - out.close(); - } - } - -// private Set parseEventIds(String str) { -// String[] parts = str.split(" "); -// Set ret = new HashSet(parts.length); -// for (String strMut : parts) { -// try { -// ret.add(Long.valueOf(strMut)); -// } catch (java.lang.NumberFormatException ex) { -// logger.info(ex.getMessage()); -// } -// } -// return ret; -// } - - private void export(JSONArray table, Map> similarMutations, Map> similarCnas) - throws DaoException { - Set samples = new HashSet(); - samples.addAll(similarMutations.keySet()); - samples.addAll(similarCnas.keySet()); - for (Sample sample : samples) { - JSONArray row = new JSONArray(); - row.add(sample.getStableId()); - - String[] cancerStudy = {"unknown","unknown"}; - try { - Patient patient = DaoPatient.getPatientById(sample.getInternalPatientId()); - CancerStudy study = patient.getCancerStudy(); - cancerStudy[0] = study.getCancerStudyStableId(); - cancerStudy[1] = study.getName(); - } catch (Exception e) { - logger.error(e.getMessage()); - } - - row.add(Arrays.asList(cancerStudy)); - Map> events = new HashMap>(2); - - Set mutations = similarMutations.get(sample); - if (mutations != null) { - events.put(MUTATION, mutations); - } - - Set cna = similarCnas.get(sample); - if (cna != null) { - events.put(CNA, cna); - } - - row.add(events); - table.add(row); - } - } - - // - /** - * Handles the HTTP GET method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doGet(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Handles the HTTP POST method. - * @param request servlet request - * @param response servlet response - * @throws ServletException if a servlet-specific error occurs - * @throws IOException if an I/O error occurs - */ - @Override - protected void doPost(HttpServletRequest request, HttpServletResponse response) - throws ServletException, IOException { - processRequest(request, response); - } - - /** - * Returns a short description of the servlet. - * @return a String containing servlet description - */ - @Override - public String getServletInfo() { - return "Short description"; - }// -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/SurvivalChiSquareDistributionCalc.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/SurvivalChiSquareDistributionCalc.java deleted file mode 100644 index 37bf8566e52..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/SurvivalChiSquareDistributionCalc.java +++ /dev/null @@ -1,88 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.PrintWriter; -import org.apache.commons.math3.distribution.ChiSquaredDistribution; - -/** - * Calculate p-value from chi square score - * (degree of freedom is fixed as 1) - * - * - * @author : yichao S - * @date: Sep 2013 - * @param chi_square_score - * - * @return p_value - */ - -public class SurvivalChiSquareDistributionCalc extends HttpServlet { - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws javax.servlet.ServletException - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) - throws ServletException, IOException { - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles the HTTP POST Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) - throws ServletException, IOException { - String chi_square_score = httpServletRequest.getParameter("chi_square_score"); - ChiSquaredDistribution distribution; - distribution = new ChiSquaredDistribution(1); - double p_value = 1 - distribution.cumulativeProbability(Float.parseFloat(chi_square_score)); - httpServletResponse.setContentType("text/plain"); - PrintWriter out = httpServletResponse.getWriter(); - out.write(Double.toString(p_value)); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/SvgConverter.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/SvgConverter.java deleted file mode 100644 index 1c7f8eedab4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/SvgConverter.java +++ /dev/null @@ -1,169 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import java.util.regex.Pattern; -import java.util.regex.Matcher; - -import org.apache.commons.codec.binary.Base64; -import org.apache.commons.io.FilenameUtils; -import org.apache.batik.transcoder.Transcoder; -import org.apache.batik.transcoder.TranscoderException; -import org.apache.batik.transcoder.TranscoderInput; -import org.apache.batik.transcoder.TranscoderOutput; -import org.apache.fop.svg.PDFTranscoder; -import org.apache.batik.transcoder.image.PNGTranscoder; - -import javax.servlet.RequestDispatcher; -import javax.servlet.ServletContext; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServlet; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import org.apache.commons.io.IOUtils; -import org.apache.commons.fileupload.FileItem; -import org.mskcc.cbio.portal.util.FileUploadRequestWrapper; -import org.mskcc.cbio.portal.util.XDebug; -import org.mskcc.cbio.portal.util.XssRequestWrapper; -import org.owasp.validator.html.PolicyException; - -public class SvgConverter extends HttpServlet { - - private Pattern svgXPosPattern; - private static String DEFAULT_FILENAME = "result"; - - /** - * Initializes the servlet. - * - * @throws ServletException - */ - public void init() throws ServletException { - - super.init(); - svgXPosPattern = Pattern.compile("( x=\"(\\d+)\")"); - } - - /** - * Handles HTTP GET Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, - IOException { - - doPost(httpServletRequest, httpServletResponse); - } - - /** - * Handles the HTTP POST Request. - * - * @param httpServletRequest HttpServletRequest - * @param httpServletResponse HttpServletResponse - * @throws ServletException - */ - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - - // setup a debug object - XDebug xdebug = new XDebug( httpServletRequest ); - xdebug.logMsg(this, "Attempting to parse request parameters."); - - String format = httpServletRequest.getParameter("filetype"); - String xml = httpServletRequest.getParameter("svgelement"); - - // TODO - update antisamy.xml to support svg-xml - if (httpServletRequest instanceof XssRequestWrapper) - { - format = ((XssRequestWrapper) httpServletRequest).getRawParameter("filetype"); - xml = ((XssRequestWrapper) httpServletRequest).getRawParameter("svgelement"); - } - - if (format.equals("pdf_data")) - { - convertToPDF(httpServletResponse, xml); - } else if (format.equals("png_data")) { - convertToPNG(httpServletResponse, xml); - } - } - - /** - * Converts svg xml to pdf and writes it to the response as - * a Base 64 encoded string. - * - * @param response - * @param xml - * @throws ServletException - * @throws IOException - */ - private void convertToPDF(HttpServletResponse response, String xml) - throws ServletException, IOException { - OutputStream out = response.getOutputStream(); - ByteArrayOutputStream byteOut = new ByteArrayOutputStream(); - try { - InputStream is = new ByteArrayInputStream(xml.getBytes()); - TranscoderInput input = new TranscoderInput(is); - TranscoderOutput output = new TranscoderOutput(byteOut); - Transcoder transcoder = new PDFTranscoder(); - transcoder.addTranscodingHint( - PDFTranscoder.KEY_XML_PARSER_CLASSNAME, - "org.apache.xerces.parsers.SAXParser"); - response.setContentType("application/pdf"); - transcoder.transcode(input, output); - byteOut.close(); - out.write(Base64.encodeBase64(byteOut.toByteArray())); - } catch (Exception e) { - System.err.println(e.toString()); - } - } - - private void convertToPNG(HttpServletResponse response, String xml) - throws ServletException, IOException { - OutputStream out = response.getOutputStream(); - ByteArrayOutputStream byteOut = new ByteArrayOutputStream(); - try { - InputStream is = new ByteArrayInputStream(xml.getBytes()); - TranscoderInput input = new TranscoderInput(is); - TranscoderOutput output = new TranscoderOutput(byteOut); - Transcoder transcoder = new PNGTranscoder(); - transcoder.transcode(input, output); - byteOut.close(); - out.write(Base64.encodeBase64(byteOut.toByteArray())); - } catch (Exception e) { - System.err.println(e.toString()); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/servlet/WebService.java b/core/src/main/java/org/mskcc/cbio/portal/servlet/WebService.java deleted file mode 100644 index 06045555a40..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/servlet/WebService.java +++ /dev/null @@ -1,536 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.web_api.*; -import org.mskcc.cbio.portal.model.*; - -import org.json.simple.*; -import org.springframework.security.core.userdetails.UserDetails; - -import java.io.*; -import java.util.*; -import java.util.regex.Pattern; -import javax.servlet.http.*; -import javax.servlet.ServletException; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Core Web Service. - * - * @author Ethan Cerami. - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class WebService extends HttpServlet { - private static Logger logger = LoggerFactory.getLogger(WebService.class); - public static final String CANCER_STUDY_ID = "cancer_study_id"; - public static final String CANCER_TYPE_ID = "cancer_type_id"; - public static final String GENETIC_PROFILE_ID = "genetic_profile_id"; - public static final String GENE_LIST = "gene_list"; - public static final String CMD = "cmd"; - public static final String Q_VALUE_THRESHOLD = "q_value_threshold"; - public static final String GENE_SYMBOL = "gene_symbol"; - public static final String ENTREZ_GENE_ID = "entrez_gene_id"; - public static final String CASE_LIST = "case_list"; - public static final String CASE_IDS_KEY = "case_ids_key"; - public static final String CASE_SET_ID = "case_set_id"; - public static final String SUPPRESS_MONDRIAN_HEADER = "suppress_mondrian_header"; - public static final String EMAIL_ADDRESS = "email_address"; - public static final String SECRET_KEY = "secret_key"; - public static final String PROTEIN_ARRAY_TYPE = "protein_array_type"; - public static final String PROTEIN_ARRAY_ID = "protein_array_id"; - public static final String FORMAT = "format"; - - // class which process access control to cancer studies - private AccessControl accessControl; - - /** - * Shutdown the Servlet. - */ - public void destroy() { - super.destroy(); - } - - /** - * Initializes Servlet with parameters in web.xml file. - * - * @throws javax.servlet.ServletException Servlet Initialization Error. - */ - public void init() throws ServletException { - super.init(); - System.out.println("Starting up the Web Service API..."); - System.out.println("Reading in init parameters from web.xml"); - DatabaseProperties dbProperties = DatabaseProperties.getInstance(); - System.out.println("Initializing AccessControl"); - accessControl = SpringUtil.getAccessControl(); - System.out.println("Starting CGDS Server"); - verifyDbConnection(); - } - - /** - * Handles GET Requests. - * - * @param httpServletRequest HttpServlet Request. - * @param httpServletResponse HttpServlet Response. - * @throws ServletException Servlet Error. - * @throws IOException IO Error. - */ - @Override - protected void doGet(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - processClient(httpServletRequest, httpServletResponse); - } - - /** - * Handles POST Requests. - * - * @param httpServletRequest HttpServlet Request. - * @param httpServletResponse HttpServlet Response. - * @throws ServletException Servlet Error. - * @throws IOException IO Error. - */ - @Override - protected void doPost(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws ServletException, IOException { - processClient(httpServletRequest, httpServletResponse); - } - - /** - * Processes all Client Requests. - * - * @param httpServletRequest HttpServlet Request. - * @param httpServletResponse HttpServlet Response. - * @throws IOException IO Error. - */ - public void processClient(HttpServletRequest httpServletRequest, - HttpServletResponse httpServletResponse) throws IOException { - PrintWriter writer = httpServletResponse.getWriter(); - Date startTime = new Date(); - String cmd = httpServletRequest.getParameter(CMD); - - - try { - // set the content type based on the format parameter - if ("json".equals(httpServletRequest.getParameter(FORMAT))) { - httpServletResponse.setContentType("application/json"); - } - else { - httpServletResponse.setContentType("text/plain"); - } - - // Branch, based on command. - if (null == cmd) { - outputMissingParameterError(writer, CMD); - return; - } - - // check command - if (!goodCommand(writer, cmd)) { - return; - } - - if (cmd.equals("getTypesOfCancer")) { - getTypesOfCancer(writer); - return; - } - if (cmd.equals("getNetwork")) { - getNetwork(httpServletRequest, writer); - return; - } - - if (cmd.equals("getMutSig")) { - getMutSig(httpServletRequest, writer); - return; - } - - // We support the new getCancerStudies plus the deprecated getCancerTypes command - if (cmd.equals("getCancerStudies") || cmd.equals("getCancerTypes")) { - getCancerStudies(httpServletRequest, writer); - return; - } - - - // TODO: CASES: REMOVE? - // no cancer_study_id or no case_set_id or genetic_profile_id - if (null == WebserviceParserUtils.getCancerStudyId(httpServletRequest) && - null == httpServletRequest.getParameter(WebService.CASE_SET_ID) && - null == httpServletRequest.getParameter(WebService.GENETIC_PROFILE_ID) && - null == httpServletRequest.getParameter(WebService.CASE_LIST)) { - outputError(writer, "No cancer study (cancer_study_id), or genetic profile (genetic_profile_id) " + - "or case list or (case_list) case set (case_set_id) provided by request. " + - "Please reformulate request."); - return; - } - - HashSet cancerStudyIDs = WebserviceParserUtils.getCancerStudyIDs(httpServletRequest); - if (cancerStudyIDs.isEmpty()) { - outputError(writer, "Problem when identifying a cancer study for the request."); - return; - } - // TODO: if cancerStudyID == CancerStudy.NO_SUCH_STUDY report an error with more info - for (String cancerStudyID : cancerStudyIDs) { - if (!DaoCancerStudy.doesCancerStudyExistByStableId(cancerStudyID)) { - outputError(writer, "The cancer study identified by the request (" + cancerStudyID + - ") is not in the dbms. Please reformulate request."); - return; - } - if (accessControl.isAccessibleCancerStudy(cancerStudyID).size() != 1) { - outputError(writer, "You are not authorized to view the cancer study identified by the request (" + cancerStudyID + ")."); - return; - } - else { - UserDetails ud = accessControl.getUserDetails(); - if (ud != null) { - logger.info("WebService.processClient: Query initiated by user: " + ud.getUsername()); - } - } - } - - if (cmd.equals("getGeneticProfiles")) { - // PROVIDES CANCER_STUDY_ID - getGeneticProfiles(httpServletRequest, writer); - } else if (cmd.equals("getProfileData")) { - // PROVIDES genetic_profile_id - getProfileData(httpServletRequest, writer); - } else if (cmd.equals("getCaseLists")) { - // PROVIDES CANCER_STUDY_ID - getSampleLists(httpServletRequest, writer); - } else if (cmd.equals("getClinicalData")) { - // PROVIDES case_set_id - getClinicalData(httpServletRequest, writer); - } else if (cmd.equals("getPatientSampleMapping")) { - getSampleAndPatientMappingTable(httpServletRequest, writer); - } else if (cmd.equals("getMutationData")) { - // PROVIDES genetic_profile_id - getMutationData(httpServletRequest, writer); - } else { - throw new ProtocolException("Unrecognized command: " + cmd); - } - } catch (DaoException e) { - e.printStackTrace(); - outputError(writer, "internal error: " + e.getMessage()); - } catch (ProtocolException e) { - e.printStackTrace(); - outputError(writer, e.getMsg()); - } catch (Exception e) { - e.printStackTrace(); - outputError(writer, e.toString()); - } finally { - writer.flush(); - writer.close(); - Date stopTime = new Date(); - long timeElapsed = stopTime.getTime() - startTime.getTime(); - } - } - - /** - * Gets the Network of Interest. - * - * @param httpServletRequest HttpServletRequest Object. - * @param writer Print Writer Object. - * @throws DaoException Database Exception. - * @throws ProtocolException Protocol Exception. - */ - private void getNetwork(HttpServletRequest httpServletRequest, - PrintWriter writer) throws DaoException, ProtocolException { - String geneList = httpServletRequest.getParameter(GENE_LIST); - if (geneList == null || geneList.length() == 0) { - throw new ProtocolException("Missing Parameter: " + GENE_LIST); - } - ArrayList targetGeneList = getGeneList(httpServletRequest); - String out = GetNetwork.getNetwork(targetGeneList); - writer.print(out); - } - - private void getTypesOfCancer(PrintWriter writer) throws DaoException, ProtocolException { - - String out = GetTypesOfCancer.getTypesOfCancer(); - writer.print(out); - } - - private void getCancerStudies(HttpServletRequest httpServletRequest, PrintWriter writer) - throws DaoException, ProtocolException { - String out = GetTypesOfCancer.getCancerStudies(); - writer.print(out); - } - - private void getGeneticProfiles(HttpServletRequest httpServletRequest, PrintWriter writer) - throws DaoException { - - String cancerStudyStableId = WebserviceParserUtils.getCancerStudyId(httpServletRequest); - if (cancerStudyStableId == null) { - outputMissingParameterError(writer, CANCER_STUDY_ID); - } else { - String out = GetGeneticProfiles.getGeneticProfilesAsTable(cancerStudyStableId); - writer.print(out); - } - } - - private void getSampleLists(HttpServletRequest httpServletRequest, PrintWriter writer) - throws DaoException { - - String cancerStudyStableId = WebserviceParserUtils.getCancerStudyId(httpServletRequest); - if (cancerStudyStableId == null) { - outputMissingParameterError(writer, CANCER_STUDY_ID); - } else { - String out = GetSampleLists.getSampleListsAsTable(cancerStudyStableId); - writer.print(out); - } - } - - private void outputError(PrintWriter writer, String msg) { - writer.print("Error: " + msg + "\n"); - } - - private void getProfileData(HttpServletRequest request, PrintWriter writer) - throws DaoException, ProtocolException, IOException { - List sampleList = WebserviceParserUtils.getSampleIds(request); - validateRequestForProfileOrMutationData(request); - ArrayList geneticProfileIdList = WebserviceParserUtils.getGeneticProfileId(request); - ArrayList targetGeneList = getGeneList(request); - - if (targetGeneList.size() > 1 && geneticProfileIdList.size() > 1) { - throw new ProtocolException - ("You can specify multiple genes or multiple genetic profiles, " + - "but not both at once!"); - } - - Boolean suppressMondrianHeader = Boolean.parseBoolean(request.getParameter(SUPPRESS_MONDRIAN_HEADER)); - GetProfileData getProfileData = new GetProfileData(geneticProfileIdList, targetGeneList, - sampleList, suppressMondrianHeader); - - String format = WebserviceParserUtils.getFormat(request); - - if (format == null || "txt".equals(format.toLowerCase())) { - // default to txt if format parameter is not specified - String out = getProfileData.getRawContent(); - writer.print(out); - } - else if ("json".equals(format.toLowerCase())) { - JSONArray.writeJSONString(getProfileData.getJson(), writer); - } - } - - private void getClinicalData(HttpServletRequest request, PrintWriter writer) - throws DaoException, ProtocolException, IOException { - - String cancerStudyId = WebserviceParserUtils.getCancerStudyId(request); - if (cancerStudyId==null) { - Set cancerStudyIds = WebserviceParserUtils.getCancerStudyIDs(request); - if (cancerStudyIds.size()!=1) { - writer.print("The cmd only support one and only one cancer study."); - return; - } - cancerStudyId = cancerStudyIds.iterator().next(); - } - int internalCancerStudyId = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId).getInternalId(); - - List sampleIds = WebserviceParserUtils.getSampleIds(request); - - String format = WebserviceParserUtils.getFormat(request); - - String attrId = request.getParameter("attribute_id"); - - if (format == null || "txt".equals(format)) { // default to txt if format parameter is not specified - if (attrId == null) { - writer.print(GetClinicalData.getTxt(internalCancerStudyId, sampleIds)); - } else { - if (sampleIds.size() != 1) { - throw new IOException("cannot ask for multiple patients"); - } - writer.print(GetClinicalData.getTxtDatum(internalCancerStudyId, sampleIds.get(0), attrId)); - } - } - else if ("json".equals(format)) { - if (attrId == null) { - JSONObject.writeJSONString(GetClinicalData.getJSON(internalCancerStudyId, sampleIds), writer); - } else { - JSONObject outObject; - if (sampleIds.size() == 1) { - outObject = GetClinicalData.getJsonDatum(internalCancerStudyId, sampleIds.get(0), attrId); - } - else { - outObject = GetClinicalData.getJSON(internalCancerStudyId, sampleIds, attrId); - } - JSONObject.writeJSONString(outObject, writer); - } - } - else { - // die - writer.print("There was an error in processing your request. Please try again"); - throw new ProtocolException("please specify the format, i.e. format=txt OR format=json"); - } - } - - private void getSampleAndPatientMappingTable(HttpServletRequest request, PrintWriter writer) - throws DaoException, ProtocolException, IOException { - - String cancerStudyId = WebserviceParserUtils.getCancerStudyId(request); - if(cancerStudyId == null) { - writer.print("Please specify the cancer study."); - return; - } - - int internalCancerStudyId = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId).getInternalId(); - List sampleIds = WebserviceParserUtils.getSampleIds(request); - - Map> mapping = new JSONObject(); - for (String sampleId : sampleIds) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(internalCancerStudyId, sampleId); - Patient patient = DaoPatient.getPatientById(sample.getInternalPatientId()); - String patientId = patient.getStableId(); - List sids = mapping.get(patientId); - if (sids==null) { - sids = new ArrayList(); - mapping.put(patientId, sids); - } - sids.add(sampleId); - } - JSONObject.writeJSONString(mapping, writer); - } - - /* - * For getMutSig client specifies a Cancer Study ID, - * and either a q_value_threshold, or a gene list. - * The two latter parameters are optional. - */ - private void getMutSig(HttpServletRequest request, PrintWriter writer) - throws DaoException { - String cancerStudyID = WebserviceParserUtils.getCancerStudyId(request); - if ((cancerStudyID == null) || (cancerStudyID.length() == 0)) { - writer.print("Please enter a Cancer Type"); - } - String qValueThreshold = request.getParameter(Q_VALUE_THRESHOLD); - String geneList = request.getParameter(GENE_LIST); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyID); - int cancerID = cancerStudy.getInternalId(); - if (qValueThreshold == null && geneList == null) { - StringBuffer output = GetMutSig.getMutSig(cancerID); - writer.print(output); - } else if (qValueThreshold != null && geneList == null) { - StringBuffer output = GetMutSig.getMutSig(cancerID, qValueThreshold, true); - writer.print(output); - } else if (qValueThreshold == null && geneList != null) { - StringBuffer output = GetMutSig.getMutSig(cancerID, geneList, false); - writer.print(output); - } else { - writer.print("Invalid command. Please input a valid Q-Value Threshold, or Gene List."); - } - } - - private void getMutationData(HttpServletRequest request, PrintWriter writer) - throws DaoException, ProtocolException, UnsupportedEncodingException { - List sampleList = null; - try { - sampleList = WebserviceParserUtils.getSampleIds(request); - } catch (ProtocolException ex) {} - validateRequestForProfileOrMutationData(request); - ArrayList geneticProfileIdList = WebserviceParserUtils.getGeneticProfileId(request); - - for (String geneticProfileId : geneticProfileIdList) { - ArrayList targetGeneList = getGeneList(request); - String out = GetMutationData.getProfileData(geneticProfileId, targetGeneList, - sampleList); - writer.print(out); - } - } - - private ArrayList getGeneList(HttpServletRequest request) { - // bypassing security filtering for the gene list.. - String geneList = request.getParameter(GENE_LIST); - if (request instanceof XssRequestWrapper) { - geneList = ((XssRequestWrapper)request).getRawParameter(GENE_LIST); - } - - // Split on white space or commas - Pattern p = Pattern.compile("[,\\s]+"); - String genes[] = p.split(geneList); - ArrayList targetGeneList = new ArrayList(); - for (String gene : genes) { - gene = gene.trim(); - if (gene.length() == 0) { - continue; - } - targetGeneList.add(gene); - } - return targetGeneList; - } - - private void validateRequestForProfileOrMutationData(HttpServletRequest request) - throws ProtocolException { - String geneticProfileIdStr = request.getParameter(GENETIC_PROFILE_ID); - String geneList = request.getParameter(GENE_LIST); - if (geneticProfileIdStr == null || geneticProfileIdStr.length() == 0) { - throw new ProtocolException("Missing Parameter: " + GENETIC_PROFILE_ID); - } - - if (geneList == null || geneList.length() == 0) { - throw new ProtocolException("Missing Parameter: " + GENE_LIST); - } - } - - private void outputMissingParameterError(PrintWriter writer, String missingParameter) { - outputError(writer, "you must specify a " + missingParameter + " parameter."); - } - - /** - * Verifies Database Connection. In the event of an error, log - * messages are written out to catalina.out. - */ - private void verifyDbConnection() { - if (DaoCancerStudy.getCount()==0) { - System.err.println("**** Fatal Error in CGDS. Could not connect to " - + "database"); - } - } - - private boolean goodCommand(PrintWriter writer, String cmd) { - // check that command is correct - String[] commands = {"getTypesOfCancer", "getNetwork", "getCancerStudies", - "getCancerTypes", "getGeneticProfiles", "getProfileData", "getCaseLists", - "getClinicalData", "getAllClinicalData", "getPatientSampleMapping", - "getMutationData", "getMutationFrequency", "getProteinArrayInfo", - "getProteinArrayData", "getMutSig"}; - for (String aCmd : commands) { - if (aCmd.equals(cmd)) { - return true; - } - } - outputError(writer, "'" + cmd + "' not a valid command."); - return false; - - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/stats/BenjaminiHochbergFDR.java b/core/src/main/java/org/mskcc/cbio/portal/stats/BenjaminiHochbergFDR.java deleted file mode 100644 index 997f04a1bf7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/stats/BenjaminiHochbergFDR.java +++ /dev/null @@ -1,113 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - - -package org.mskcc.cbio.portal.stats; - -import java.util.Arrays; - -/** - * Bejamini Hochberg FDR Correction Code. - *

    - * For details, refer to: http://www.tau.ac.il/cc/pages/docs/sas8/stat/chap43/sect14.htm - * - * @author Steven Maere, Karel Heymans, and Ethan Cerami - */ -public final class BenjaminiHochbergFDR { - - /** - * the raw p-values that were given as input for the constructor. - */ - private double[] pvalues; - - /** - * the adjusted p-values ordened in ascending order. - */ - private double[] adjustedPvalues; - - /** - * the number of tests. - */ - private int m; - - /** - * Constructor. - * - * @param p P-Values. - */ - public BenjaminiHochbergFDR(double[] p) { - this.pvalues = p; - this.m = pvalues.length; - this.adjustedPvalues = new double[m]; - } - - /** - * method that calculates the Benjamini and Hochberg correction of - * the false discovery rate. - */ - public void calculate() { - - // order the pvalues. - Arrays.sort(pvalues); - - // iterate through all p-values: largest to smallest - for (int i = m - 1; i >= 0; i--) { - if (i == m - 1) { - adjustedPvalues[i] = pvalues[i]; - } else { - double unadjustedPvalue = pvalues[i]; - int divideByM = i + 1; - double left = adjustedPvalues[i + 1]; - double right = (m / (double) divideByM) * unadjustedPvalue; - adjustedPvalues[i] = Math.min(left, right); - } - } - } - - /** - * getter for the ordened p-values. - * - * @return String[] with the ordened p-values. - */ - public double[] getOrdenedPvalues() { - return pvalues; - } - - /** - * getter for the adjusted p-values. - * - * @return String[] with the adjusted p-values. - */ - public double[] getAdjustedPvalues() { - return adjustedPvalues; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/stats/FisherExact.java b/core/src/main/java/org/mskcc/cbio/portal/stats/FisherExact.java deleted file mode 100644 index e584a177d3f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/stats/FisherExact.java +++ /dev/null @@ -1,317 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.stats; - -/** - * This does a Fisher Exact test. The Fisher's Exact test procedure calculates an exact probability value - * for the relationship between two dichotomous variables, as found in a two by two crosstable. The program - * calculates the difference between the data observed and the data expected, considering the given marginal - * and the assumptions of the model of independence. It works in exactly the same way as the Chi-square test - * for independence; however, the Chi-square gives only an estimate of the true probability value, an estimate - * which might not be very accurate if the marginal is very uneven or if there is a small value (less than five) - * in one of the cells. - *

    - * It uses an array of factorials initialized at the beginning to provide speed. - * There could be better ways to do this. - * - * @author Ed Buckler - * @version $Id: FisherExact.java,v 1 - */ - -public class FisherExact { - private static final boolean DEBUG = false; - private double[] f; - int maxSize; - - /** - * constructor for FisherExact table - * - * @param maxSize is the maximum sum that will be encountered by the table (a+b+c+d) - */ - public FisherExact(int maxSize) { - this.maxSize = maxSize; - double cf = 1.0; - f = new double[maxSize + 1]; - f[0] = 0.0; - for (int i = 1; i <= this.maxSize; i++) { - f[i] = f[i - 1] + Math.log(i); - } - } - - /** - * calculates the P-value for this specific state - * - * @param a a, b, c, d are the four cells in a 2x2 matrix - * @param b - * @param c - * @param d - * @return the P-value - */ - public final double getP(int a, int b, int c, int d) { - int n = a + b + c + d; - if (n > maxSize) { - return Double.NaN; - } - double p; - p = (f[a + b] + f[c + d] + f[a + c] + f[b + d]) - (f[a] + f[b] + f[c] + f[d] + f[n]); - return Math.exp(p); - } - - /** - * Calculates the one-tail P-value for the Fisher Exact test. Determines whether to calculate the right- or left- - * tail, thereby always returning the smallest p-value. - * - * @param a a, b, c, d are the four cells in a 2x2 matrix - * @param b - * @param c - * @param d - * @return one-tailed P-value (right or left, whichever is smallest) - */ - public final double getCumlativeP(int a, int b, int c, int d) { - int min, i; - int n = a + b + c + d; - if (n > maxSize) { - return Double.NaN; - } - double p = 0; - - p += getP(a, b, c, d); - if (DEBUG) { - System.out.println("p = " + p); - } - if ((a * d) >= (b * c)) { - if (DEBUG) { - System.out.println("doing R-tail: a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - min = (c < b) ? c : b; - for (i = 0; i < min; i++) { - if (DEBUG) { - System.out.print("doing round " + i); - } - p += getP(++a, --b, --c, ++d); - if (DEBUG) { - System.out.println("\ta=" + a + " b=" + b + " c=" + c + " d=" + d); - } - } - } - if ((a * d) < (b * c)) { - if (DEBUG) { - System.out.println("doing L-tail: a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - min = (a < d) ? a : d; - for (i = 0; i < min; i++) { - if (DEBUG) { - System.out.print("doing round " + i); - } - double pTemp = getP(--a, ++b, ++c, --d); - if (DEBUG) { - System.out.print("\tpTemp = " + pTemp); - } - p += pTemp; - if (DEBUG) { - System.out.println("\ta=" + a + " b=" + b + " c=" + c + " d=" + d); - } - } - } - return p; - } - - /** - * Calculates the right-tail P-value for the Fisher Exact test. - * - * @param a a, b, c, d are the four cells in a 2x2 matrix - * @param b - * @param c - * @param d - * @return one-tailed P-value (right-tail) - */ - public final double getRightTailedP(int a, int b, int c, int d) { - int min, i; - int n = a + b + c + d; - if (n > maxSize) { - return Double.NaN; - } - double p = 0; - - p += getP(a, b, c, d); - if (DEBUG) { - System.out.println("p = " + p); - } - if (DEBUG) { - System.out.println("doing R-tail: a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - min = (c < b) ? c : b; - for (i = 0; i < min; i++) { - p += getP(++a, --b, --c, ++d); - - } - return p; - } - - /** - * Calculates the left-tail P-value for the Fisher Exact test. - * - * @param a a, b, c, d are the four cells in a 2x2 matrix - * @param b - * @param c - * @param d - * @return one-tailed P-value (left-tail) - */ - public final double getLeftTailedP(int a, int b, int c, int d) { - int min, i; - int n = a + b + c + d; - if (n > maxSize) { - return Double.NaN; - } - double p = 0; - - p += getP(a, b, c, d); - if (DEBUG) { - System.out.println("p = " + p); - } - if (DEBUG) { - System.out.println("doing L-tail: a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - min = (a < d) ? a : d; - for (i = 0; i < min; i++) { - if (DEBUG) { - System.out.print("doing round " + i); - } - double pTemp = getP(--a, ++b, ++c, --d); - if (DEBUG) { - System.out.print("\tpTemp = " + pTemp); - } - p += pTemp; - if (DEBUG) { - System.out.println("\ta=" + a + " b=" + b + " c=" + c + " d=" + d); - } - } - - - return p; - } - - /** - * Calculates the two-tailed P-value for the Fisher Exact test. - *

    - * In order for a table under consideration to have its p-value included - * in the final result, it must have a p-value less than the original table's P-value, i.e. - * Fisher's exact test computes the probability, given the observed marginal - * frequencies, of obtaining exactly the frequencies observed and any configuration more extreme. - * By "more extreme," we mean any configuration (given observed marginals) with a smaller probability of - * occurrence in the same direction (one-tailed) or in both directions (two-tailed). - * - * @param a a, b, c, d are the four cells in a 2x2 matrix - * @param b - * @param c - * @param d - * @return two-tailed P-value - */ - public final double getTwoTailedP(int a, int b, int c, int d) { - int min, i; - int n = a + b + c + d; - if (n > maxSize) { - return Double.NaN; - } - double p = 0; - - double baseP = getP(a, b, c, d); -// in order for a table under consideration to have its p-value included -// in the final result, it must have a p-value less than the baseP, i.e. -// Fisher's exact test computes the probability, given the observed marginal -// frequencies, of obtaining exactly the frequencies observed and any configuration more extreme. -// By "more extreme," we mean any configuration (given observed marginals) with a smaller probability of -// occurrence in the same direction (one-tailed) or in both directions (two-tailed). - - if (DEBUG) { - System.out.println("baseP = " + baseP); - } - int initialA = a, initialB = b, initialC = c, initialD = d; - p += baseP; - if (DEBUG) { - System.out.println("p = " + p); - } - if (DEBUG) { - System.out.println("Starting with R-tail: a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - min = (c < b) ? c : b; - for (i = 0; i < min; i++) { - if (DEBUG) { - System.out.print("doing round " + i); - } - double tempP = getP(++a, --b, --c, ++d); - if (tempP <= baseP) { - if (DEBUG) { - System.out.print("\ttempP (" + tempP + ") is less than baseP (" + baseP + ")"); - } - p += tempP; - } - if (DEBUG) { - System.out.println(" a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - } - - // reset the values to their original so we can repeat this process for the other side - a = initialA; - b = initialB; - c = initialC; - d = initialD; - - if (DEBUG) { - System.out.println("Now doing L-tail: a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - min = (a < d) ? a : d; - if (DEBUG) { - System.out.println("min = " + min); - } - for (i = 0; i < min; i++) { - if (DEBUG) { - System.out.print("doing round " + i); - } - double pTemp = getP(--a, ++b, ++c, --d); - if (DEBUG) { - System.out.println(" pTemp = " + pTemp); - } - if (pTemp <= baseP) { - if (DEBUG) { - System.out.print("\ttempP (" + pTemp + ") is less than baseP (" + baseP + ")"); - } - p += pTemp; - } - if (DEBUG) { - System.out.println(" a=" + a + " b=" + b + " c=" + c + " d=" + d); - } - } - return p; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/stats/OddsRatio.java b/core/src/main/java/org/mskcc/cbio/portal/stats/OddsRatio.java deleted file mode 100644 index 92f8f839559..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/stats/OddsRatio.java +++ /dev/null @@ -1,147 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.stats; - -import org.mskcc.cbio.portal.model.ProfileDataSummary; - -import java.util.ArrayList; - -public class OddsRatio { - private int a = 0, b = 0, c = 0, d = 0; - private ArrayList caseIdList; - private StringBuffer buf = new StringBuffer(); - private double oddsRatio; - private double pValue; - private double lowerConfidenceInterval; - private double upperConfidenceInterval; - private StringBuffer x = new StringBuffer(); - private StringBuffer y = new StringBuffer(); - - public OddsRatio(ProfileDataSummary pDataSummary, String geneA, String geneB) { - caseIdList = pDataSummary.getProfileData().getCaseIdList(); - x.append ("x = c("); - y.append ("y = c("); - for (String caseId : caseIdList) { - boolean valueA = pDataSummary.isGeneAltered(geneA, caseId); - boolean valueB = pDataSummary.isGeneAltered(geneB, caseId); - - if (valueA) { - x.append("1,"); - } else { - x.append("0,"); - } - if (valueB) { - y.append("1,"); - } else { - y.append("0,"); - } - - String valueAStr = pDataSummary.getProfileData().getValue(geneA, caseId); - String valueBStr = pDataSummary.getProfileData().getValue(geneB, caseId); - buf.append(valueAStr + ": " + valueBStr + "
    "); - buf.append("---> " + valueA + ": " + valueB + "
    "); - if (valueA == true && valueB == true) { - d++; - } else if (valueA == false && valueB == false) { - a++; - } else if (valueA == true && valueB == false) { - c++; - } else { - b++; - } - } - x = new StringBuffer(x.substring(0, x.length()-1)); - y = new StringBuffer(y.substring(0, y.length()-1)); - x.append (")"); - y.append (")"); - - oddsRatio = ((double) (a * d)) / ((double) (b * c)); - FisherExact fisher = new FisherExact(a + b + c + d); - pValue = fisher.getTwoTailedP(a, b, c, d); - lowerConfidenceInterval = Math.exp(Math.log(oddsRatio) - 1.96 * (Math.sqrt(1 / (double) a - + 1 / (double) b + 1 / (double) c + 1 / (double) d))); - upperConfidenceInterval = Math.exp(Math.log(oddsRatio) + 1.96 * (Math.sqrt(1 / (double) a - + 1 / (double) b + 1 / (double) c + 1 / (double) d))); - - } - - public String getLog() { - return buf.toString(); - } - - public double getOddsRatio() { - return oddsRatio; - } - - public double getTwoTailedP() { - return pValue; - } - - public String getRCommand() { - return "library(\"Kendall\")
    m <- matrix (c (" - + a + ", " + c + "," + b + "," + d + "), nr =2)" - + "
    " + "fisher.test (m, alternative=\"less\")
    " + - "fisher.test (m, alternative=\"greater\")
    " + - x.toString() + "
    " + - y.toString() + "
    " + - "Kendall(x,y)"; - } - - public int getA() { - return a; - } - - public int getB() { - return b; - } - - public int getC() { - return c; - } - - public int getD() { - return d; - } - - public int getNumCases() { - return caseIdList.size(); - } - - public double getLowerConfidenceInterval() { - return lowerConfidenceInterval; - } - - public double getUpperConfidenceInterval() { - return upperConfidenceInterval; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/AccessControl.java b/core/src/main/java/org/mskcc/cbio/portal/util/AccessControl.java deleted file mode 100644 index b5b359f2e95..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/AccessControl.java +++ /dev/null @@ -1,78 +0,0 @@ -/* - * Copyright (c) 2015 - 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -// imports -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.web_api.ProtocolException; - -import org.springframework.security.access.prepost.PostFilter; -import org.springframework.security.core.userdetails.UserDetails; - -import java.util.List; - -/** - * Utilities for managing access control. - * - * @author Benjamin Gross - */ -public interface AccessControl { - - public static final String ALL_CANCER_STUDIES_ID = "all"; - public static final String ALL_TCGA_CANCER_STUDIES_ID = "all_tcga"; - public static final String ALL_TARGET_CANCER_STUDIES_ID = "all_nci_target"; - public static final String MULTIPLE_CANCER_STUDIES_ID = "multiple"; - - /** - * Gets Cancer Studies. Used by QueryBuilder. - * - * @return List - * @throws DaoException Database Error. - * @throws ProtocolException Protocol Error. - */ - @PostFilter("hasPermission(filterObject.getCancerStudyStableId(), 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - List getCancerStudies() throws DaoException, ProtocolException; - - /** - * Return true if the user can access the study, false otherwise. - * - * @param stableStudyId - * @return ListCancerStudy - * @throws DaoException - */ - @PostFilter("hasPermission(#stableStudyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - List isAccessibleCancerStudy(String stableStudyId) throws DaoException; - - UserDetails getUserDetails(); -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/CacheUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/CacheUtil.java deleted file mode 100644 index 7ce5fdadf01..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/CacheUtil.java +++ /dev/null @@ -1,71 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.UnsupportedEncodingException; -import java.math.BigInteger; -import java.security.MessageDigest; -import java.security.NoSuchAlgorithmException; - -public class CacheUtil -{ - public static final String encodeAlgorithm = "MD5"; - public static final String characterEncoding = "UTF-8"; - public static final int md5Base = 16; - - /** - * Generates an MD5 sum for the given string. - * - * @param message string to digested - * @return MD5 sum corresponding to the given text - */ - public static String md5sum(String message) - { - MessageDigest md5; - byte[] md5sumBytes; - String sum = null; - - try { - md5 = MessageDigest.getInstance(encodeAlgorithm); - md5sumBytes = md5.digest(message.getBytes(characterEncoding)); - sum = (new BigInteger(1, md5sumBytes)).toString(md5Base); - } catch (NoSuchAlgorithmException e) { - sum = null; - } catch (UnsupportedEncodingException e) { - sum = null; - } - - return sum; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/CancerStudyReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/CancerStudyReader.java deleted file mode 100644 index 311ad5aad01..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/CancerStudyReader.java +++ /dev/null @@ -1,146 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoReferenceGenome; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.ReferenceGenome; -import org.mskcc.cbio.portal.scripts.TrimmedProperties; - -import java.io.File; -import java.io.FileInputStream; -import java.io.IOException; -import org.mskcc.cbio.portal.dao.DaoTypeOfCancer; - -/** - * Reads and loads a cancer study file. (Before July 2011, was called a cancer type file.) - * By default, the loaded cancers are public. - * - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class CancerStudyReader { - - public static CancerStudy loadCancerStudy(File file) throws IOException, DaoException { - return loadCancerStudy(file, true, true); - } - - public static CancerStudy loadCancerStudy(File file, boolean strict, boolean addStudyToDb) throws IOException, DaoException { - TrimmedProperties properties = new TrimmedProperties(); - properties.load(new FileInputStream(file)); - - CancerStudy cancerStudy = getCancerStudy(properties); - - if (strict && null==DaoTypeOfCancer.getTypeOfCancerById(cancerStudy.getTypeOfCancerId())) { - throw new IllegalArgumentException(cancerStudy.getTypeOfCancerId()+" is not a supported cancer type."); - } - - if (addStudyToDb) { - DaoCancerStudy.addCancerStudy(cancerStudy, true); // overwrite if exist - } - - return cancerStudy; - } - - private static Boolean checkSpecies(String studyId, String genomeName) { - if (genomeName == null || genomeName.equals("")) { - return true; - } - try { - CancerStudy oldCancerStudy = DaoCancerStudy.getCancerStudyByStableId(studyId); - ReferenceGenome referenceGenome = DaoReferenceGenome.getReferenceGenomeByGenomeName( - oldCancerStudy.getReferenceGenome()); - return referenceGenome.getGenomeName().equalsIgnoreCase(genomeName); - } catch (DaoException | NullPointerException e) { - return true; - } - } - - private static CancerStudy getCancerStudy(TrimmedProperties properties) - { - String cancerStudyIdentifier = properties.getProperty("cancer_study_identifier"); - if (cancerStudyIdentifier == null) { - throw new IllegalArgumentException("cancer_study_identifier is not specified."); - } - - String name = properties.getProperty("name"); - if (name == null) { - throw new IllegalArgumentException("name is not specified."); - } - - String description = properties.getProperty("description"); - if (description == null) { - throw new IllegalArgumentException("description is not specified."); - } - - String typeOfCancer = properties.getProperty("type_of_cancer").toLowerCase(); - if ( typeOfCancer == null) { - throw new IllegalArgumentException("type of cancer is not specified."); - } - - - - CancerStudy cancerStudy = new CancerStudy(name, description, cancerStudyIdentifier, - typeOfCancer, publicStudy(properties)); - cancerStudy.setPmid(properties.getProperty("pmid")); - cancerStudy.setCitation(properties.getProperty("citation")); - cancerStudy.setGroupsInUpperCase(properties.getProperty("groups")); - String referenceGenome = properties.getProperty("reference_genome"); - - if (referenceGenome == null) { - referenceGenome = GlobalProperties.getReferenceGenomeName(); - } - if (!checkSpecies(cancerStudyIdentifier, referenceGenome)) { - throw new IllegalArgumentException("Species not match with old study"); - } - cancerStudy.setReferenceGenome(referenceGenome); - return cancerStudy; - } - - private static boolean publicStudy( TrimmedProperties properties ) { - String studyAccess = properties.getProperty("study_access"); - if ( studyAccess != null) { - if( studyAccess.equals("public") ){ - return true; - } - if( studyAccess.equals("private") ){ - return false; - } - throw new IllegalArgumentException("study_access must be either 'public' or 'private', but is " + - studyAccess ); - } - // studies are public by default - return true; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/CancerStudyTagsReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/CancerStudyTagsReader.java deleted file mode 100644 index f36639fe8f4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/CancerStudyTagsReader.java +++ /dev/null @@ -1,45 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.Scanner; - -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CancerStudyTags; -import org.mskcc.cbio.portal.scripts.TrimmedProperties; - -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; - -public class CancerStudyTagsReader { - - public static CancerStudyTags loadCancerStudyTags(File file, CancerStudy cancerStudy) - throws FileNotFoundException, IOException, DaoException { - - TrimmedProperties properties = new TrimmedProperties(); - properties.load(new FileInputStream(file)); - - String tags_filename = properties.getProperty("tags_file"); - String tags = null; - CancerStudyTags cancerStudyTags = null; - if (tags_filename != null) { - String content = new Scanner(new File(file.getParent()+"/"+tags_filename)).useDelimiter("\\Z").next(); - ObjectMapper yamlReader = new ObjectMapper(new YAMLFactory()); - Object obj = yamlReader.readValue(content, Object.class); - - ObjectMapper jsonWriter = new ObjectMapper(); - tags = jsonWriter.writeValueAsString(obj); - - cancerStudyTags = new CancerStudyTags(); - cancerStudyTags.setCancerStudyId(cancerStudy.getInternalId()); - cancerStudyTags.setTags(tags); - DaoCancerStudy.addCancerStudyTags(cancerStudyTags); - } - - return cancerStudyTags; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/CascadeSortOfMatrix.java b/core/src/main/java/org/mskcc/cbio/portal/util/CascadeSortOfMatrix.java deleted file mode 100644 index 77892502367..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/CascadeSortOfMatrix.java +++ /dev/null @@ -1,317 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Comparator; - -//import org.mskcc.cbio.portal.test.util.TestCascadeSortOfMatrix; - -//import static org.junit.Assert.assertArrayEquals; - -/** - * Given a matrix represented by an ArrayList of rows in ArrayLists, sort the - * columns so that the values in the rows are arranged in a 'cascade', that is, - * the elements in row i are sorted, and within each group of constant values in - * row i, the elements in row i+1 are sorted, etc. Used to present the data in our - * 'CancerPrint's. - * - * TODO: To scale for large datasets, convert matrix into a set of columns, and radix sort. - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class CascadeSortOfMatrix { - - private Comparator theObjectComparator; - - /** - * Construct as CascadeSortOfMatrix. - * - * @param aObjectComparator a Comparator that compares elements of the matrix that will be Cascade sorted, i.e., the argument to sort(). - * It will eventually be passed in a call to - * - * arrayListData, used for sorting. - */ - public CascadeSortOfMatrix(Comparator aObjectComparator) { - theObjectComparator = aObjectComparator; - } - - /** - * Perform the Cascade sort. - * This data documents the concept. It shows the state of the sort before each call to sortExtent, and before the return - * from sort. - -Original data: - 2 1 2 1 2 - 4 5 5 4 4 - 8 8 8 8 7 - -The first call to sortExtent sorts row 0: - 1 1 2 2 2 - 5 4 4 5 4 - 8 8 8 8 7 - -Next the first extent is sorted in row 1: - 1 1 2 2 2 - 4 5 4 5 4 - 8 8 8 8 7 - -Then the 2nd extent is sorted in row 1: - 1 1 2 2 2 - 4 5 4 4 5 - 8 8 8 7 8 - -Finally, the first and only extent of rows 0 and 1 is sorted in row 2: - 1 1 2 2 2 - 4 5 4 4 5 - 8 8 7 8 8 - - * - * @param arrayData - * @return - */ - - public Object[][] sort( Object[][] arrayData) { - - // CascadeSort - // sort columns by row 1 - int width = arrayData[0].length; // assume a rectangular matrix - - // DEFINITION of cumulativeChanges: after processing row r (cumulativeChanges[i] == true) <==> - // the value in some row <= r changed between column i-1 and column i - boolean[] cumulativeChanges = new boolean[width]; - - sortExtent(arrayData, 0, 0, width ); - recordChangeInThisRowOfData( arrayData, 0, 0, width, cumulativeChanges ); - - for (int rowIndex = 1; rowIndex < arrayData.length; rowIndex++) { - - // an 'extent' is a sequence of adjacent elements in previousRow - // that have the same value - int extentStart = 0; // index of first element in an extent - int nextExtentStart = 0; // index of first element in next extent - - while( true ){ - nextExtentStart++; - - // ALL previous rows must be the same across the entire extent - while( (nextExtentStart < width) && !cumulativeChanges[nextExtentStart] ){ - nextExtentStart++; - } - - sortExtent(arrayData, rowIndex, extentStart, nextExtentStart); - recordChangeInThisRowOfData( arrayData, rowIndex, extentStart, nextExtentStart, cumulativeChanges ); - - extentStart = nextExtentStart; - if (nextExtentStart == width ) { - break; - } - } - - } - - return arrayData; - } - - /* - * Record and accumulate (as a true bit) in cumulativeChanges columns at which data changes; - * that is, the cumulativeChanges is true for each column in which an extent ends. - * see DEFINITION of cumulativeChanges - */ - private void recordChangeInThisRowOfData( Object[][] data, int row, int extentStart, int nextExtentStart, boolean[] cumulativeChanges ){ - - for( int col=extentStart+1; col> arrayListData ) { - Object[][] data = new Object[arrayListData.size()][arrayListData.get(0).size()]; - int rowNum = 0; - for (ArrayList row : arrayListData) { - int colNum = 0; - for (Object value : row) { - data[rowNum][colNum++] = value; - } - rowNum++; - } - return data; - } - - /** - * just copy a matrix from and Array representation to an ArrayList representation - * @param arrayListData - * @return - */ - // NOT USED - public static ArrayList> copyToArrayListOfArrayList( Object[][] arrayData ) { - - ArrayList> arrayListData = new ArrayList>(); - - for (int i = 0; i < arrayData.length; i++) { - ArrayList row = new ArrayList(); - for (int j = 0; j < arrayData[i].length; j++) { - row.add( arrayData[ i ][ j ] ); - } - arrayListData.add( row ); - } - return arrayListData; - } - - // for debugging - // NOT USED - public String pToString( ElementAndIndex[] extentCopy ){ - StringBuffer sb = new StringBuffer(); - - for( ElementAndIndex e : extentCopy ){ - sb.append( e.toString() + "\n" ); - } - return sb.toString(); - } -} - -/** - * Little class to hold the pair (Object, index), so that objects and their - * original position can be found after sorting. - * - * @author arthurgoldberg - */ -class ElementAndIndex { - Object element; - int index; - - ElementAndIndex(Object e, int i) { - element = e; - index = i; - } - public String toString(){ - return( "element: " + element.toString() + "; index: " + index ); - } -} - -/** - * compare ElementAndIndex objects for sorting, etc. - * - * @author arthurgoldberg - */ -class SortExtentComparator implements Comparator { - private Comparator theObjectComparator; - - SortExtentComparator(Comparator c) { - theObjectComparator = c; - } - - public int compare(ElementAndIndex e1, ElementAndIndex e2) { - return (theObjectComparator.compare( e1.element, e2.element )); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/CategoryLabelReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/CategoryLabelReader.java deleted file mode 100644 index a3735ecdae5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/CategoryLabelReader.java +++ /dev/null @@ -1,133 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.util.HashMap; -import java.util.Map; - -/** - * Singleton utility class for creating a map from a configuration file - * for more readable category names for clinical free form table parameters. - * - * @author Selcuk Onur Sumer - */ -public class CategoryLabelReader -{ - /** - * Resource filename for the map content. - */ - public static final String CATEGORY_MAP_FILE = "/human_readable_categories.txt"; - - /** - * Singleton instance. - */ - private static CategoryLabelReader instance = null; - - /** - * Map containing mapping for more human readable category text - */ - private Map categoryLabelMap; - - public Map getCategoryLabelMap() - { - return categoryLabelMap; - } - - public static CategoryLabelReader getInstace() throws IOException - { - if (instance == null) - { - instance = new CategoryLabelReader(); - } - - return instance; - } - - /** - * Constructor. - * - * Creates a new map using the resource file. - * - * @throws IOException if an IO error occurs. - */ - private CategoryLabelReader() throws IOException - { - InputStream in = this.getClass().getResourceAsStream(CATEGORY_MAP_FILE); - this.categoryLabelMap = CategoryLabelReader.readCategoryLabelMap(in); - in.close(); - } - - /** - * Populates the category label map using the given input stream. - * - * @param in input stream for the file - * @return mapping for category labels - * @throws IOException if an IO error occurs - */ - public static Map readCategoryLabelMap(InputStream in) throws IOException - { - Map categoryLabelMap = new HashMap(); - BufferedReader reader = new BufferedReader(new InputStreamReader(in)); - String line; - - while ((line = reader.readLine()) != null) - { - String[] pair = line.split(":"); - - // skip any line with incorrect formatting - if (pair.length == 2) - { - categoryLabelMap.put(safeCategoryName(pair[0].trim()), - pair[1].trim()); - } - } - - return categoryLabelMap; - } - - /** - * Creates a safe string by replacing problematic characters (for - * an HTML id) with an underscore for the given string. - * - * @param name parameter name - * @return modified string with replaced characters - */ - public static String safeCategoryName(String name) - { - return name.replaceAll("[ /#.,:;(){}\\]\\[\"\'\\\\]", "_"); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ClinicalReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/ClinicalReader.java deleted file mode 100644 index 30b76018d23..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ClinicalReader.java +++ /dev/null @@ -1,89 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.apache.commons.lang3.StringUtils; -import org.mskcc.cbio.portal.model.ClinicalData; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; - -public class ClinicalReader { - - private File clinicalFile; - private int cancerStudyId; - - String DELIMITER = "\t"; - String COMMENT = "#"; - String CASE_ID = "CASE_ID"; - - public ClinicalReader() { } - - public ArrayList read(File file, int cancerStudyId) throws IOException { - - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - - // get case id field, all other fields are clinical attributes - String line = buf.readLine(); - int caseIdField = -1; - - String[] fields = line.split(DELIMITER); - int fields_length = fields.length; - - for (int i = 0; i < fields_length; i++) { - String field = fields[i]; - - if (StringUtils.equals(field, CASE_ID)) { - caseIdField = i; - } - } - - if (caseIdField == -1) { - throw new IOException(String.format("%s does not have a column called 'CASE_ID'", file.getName())); - } - - line = buf.readLine(); - - while (line != null) { - System.out.println(line); - } - - ArrayList clinicals = new ArrayList(); - - return clinicals; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/CnaUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/CnaUtil.java deleted file mode 100644 index 8cd00b9aff0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/CnaUtil.java +++ /dev/null @@ -1,132 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import com.fasterxml.jackson.core.*; -import org.cbioportal.model.*; -import org.mskcc.cbio.maf.NamespaceColumnParser; -import org.mskcc.cbio.maf.TabDelimitedFileUtil; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CnaEvent; -import org.mskcc.cbio.portal.model.GeneticProfile; -import com.fasterxml.jackson.databind.ObjectMapper; - -import java.io.*; -import java.util.*; - -import static org.mskcc.cbio.portal.scripts.ImportTabDelimData.*; - -public class CnaUtil { - - private final HashMap columnIndexMap; - - public static final String HUGO_SYMBOL = "Hugo_Symbol"; - public static final String ENTREZ_GENE_ID = "Entrez_Gene_Id"; - public static final String SAMPLE_ID = "Sample_Id"; - public static final String VALUE = "Value"; - public static final String CBP_DRIVER = "cbp_driver"; - public static final String CBP_DRIVER_ANNOTATION = "cbp_driver_annotation"; - public static final String CBP_DRIVER_TIERS = "cbp_driver_tiers"; - - public static final String CBP_DRIVER_TIERS_ANNOTATION = "cbp_driver_tiers_annotation"; - private NamespaceColumnParser namespaceColumnParser; - private ObjectMapper objectMapper = new ObjectMapper(); - - public CnaUtil(String[] headerParts, Set namespaces) { - this.columnIndexMap = new HashMap<>(); - - // Find header indices - for (int i = 0; i < headerParts.length; i++) { - // Put the index in the map - this.columnIndexMap.put(headerParts[i].toLowerCase(), i); - } - - if (getColumnIndex(HUGO_SYMBOL) == -1 && getColumnIndex(ENTREZ_GENE_ID) == -1) { - throw new RuntimeException("Error: at least one of the following columns should be present: Hugo_Symbol or Entrez_Gene_Id"); - } - this.namespaceColumnParser = new NamespaceColumnParser(namespaces, headerParts); - } - - public static void storeCnaEvents( - Set existingCnaEvents, - List cnaEventsToAdd - ) throws DaoException { - for (CnaEvent cnaEvent : cnaEventsToAdd) { - if (!CNA.AMP.equals(cnaEvent.getAlteration()) && !CNA.HOMDEL.equals(cnaEvent.getAlteration())) { - continue; - } - Optional existingCnaEvent = existingCnaEvents - .stream() - .filter(e -> e.equals(cnaEvent.getEvent())) - .findFirst(); - if (existingCnaEvent.isPresent()) { - cnaEvent.setEventId(existingCnaEvent.get().getEventId()); - DaoCnaEvent.addCaseCnaEvent(cnaEvent, false); - } else { - DaoCnaEvent.addCaseCnaEvent(cnaEvent, true); - existingCnaEvents.add(cnaEvent.getEvent()); - } - } - } - - public CnaEvent createEvent( - GeneticProfile geneticProfile, - int sampleId, - long entrezId, - String[] parts - ) throws IOException { - int cnaProfileId = geneticProfile.getGeneticProfileId(); - short alteration = createAlteration(parts); - CnaEvent cna = new CnaEvent(sampleId, cnaProfileId, entrezId, alteration); - cna.setDriverFilter(TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.CBP_DRIVER), parts)); - cna.setDriverFilterAnnotation(TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.CBP_DRIVER_ANNOTATION), parts)); - cna.setDriverTiersFilter(TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.CBP_DRIVER_TIERS), parts)); - cna.setDriverTiersFilterAnnotation(TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.CBP_DRIVER_TIERS_ANNOTATION), parts)); - cna.setAnnotationJson(this.namespaceColumnParser.writeValueAsString( - this.namespaceColumnParser.parseCustomNamespaces(parts) - ) - ); - return cna; - } - - private String convertMapToJsonString(Map> map) throws JsonProcessingException { - return this.objectMapper.writeValueAsString(map); - } - - public long getEntrezSymbol(String[] parts) { - String entrezAsString = TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.ENTREZ_GENE_ID), parts); - if (entrezAsString.isEmpty()) { - return 0; - } else if (!entrezAsString.matches("^\\d+$")) { - ProgressMonitor.logWarning("Ignoring line with invalid Entrez_Id " + entrezAsString); - return 0; - } - return TabDelimitedFileUtil.getPartLong(getColumnIndex(CnaUtil.ENTREZ_GENE_ID), parts); - } - - public String getHugoSymbol(String[] parts) { - return TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.HUGO_SYMBOL), parts); - } - - private short createAlteration(String[] parts) { - String value = TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.VALUE), parts); - String result = value; - // temporary solution -- change partial deletion back to full deletion. - if (value.equals(CNA_VALUE_PARTIAL_DELETION)) { - result = CNA_VALUE_HOMOZYGOUS_DELETION; - } - return Integer.valueOf(result).shortValue(); - } - - /** - * @return column index, or -1 when not found - */ - public int getColumnIndex(String colName) { - return this.columnIndexMap.getOrDefault( - colName.toLowerCase(), - -1 - ); - } - - public String getSampleIdStr(String[] parts) { - return TabDelimitedFileUtil.getPartString(getColumnIndex(CnaUtil.SAMPLE_ID), parts); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/CoExpUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/CoExpUtil.java deleted file mode 100644 index 2be4469dfcc..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/CoExpUtil.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.*; - -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.dao.*; - - - -public class CoExpUtil { - - public static ArrayList getSampleIds(String sampleSetId, String sampleIdsKeys) { - try { - DaoSampleList daoSampleList = new DaoSampleList(); - SampleList sampleList; - ArrayList sampleIdList = new ArrayList(); - if (sampleSetId.equals("-1")) { - String strSampleIds = SampleSetUtil.getSampleIds(sampleIdsKeys); - String[] sampleArray = strSampleIds.split("\\s+"); - for (String item : sampleArray) { - sampleIdList.add(item); - } - } else { - sampleList = daoSampleList.getSampleListByStableId(sampleSetId); - sampleIdList = sampleList.getSampleList(); - } - return sampleIdList; - } catch (DaoException e) { - System.out.println("Caught Dao Exception: " + e.getMessage()); - return null; - } - } - - public static GeneticProfile getPreferedGeneticProfile(String cancerStudyIdentifier) { - try { - CancerStudy cs = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - ArrayList gps = DaoGeneticProfile.getAllGeneticProfiles(cs.getInternalId()); - GeneticProfile final_gp = null; - for (GeneticProfile gp : gps) { - // TODO: support miRNA later - if (gp.getGeneticAlterationType() == GeneticAlterationType.MRNA_EXPRESSION) { - //rna seq profile (no z-scores applied) holds the highest priority) - if (gp.getStableId().toLowerCase().contains("rna_seq") && - !gp.getStableId().toLowerCase().contains("zscores")) { - final_gp = gp; - break; - } else if (!gp.getStableId().toLowerCase().contains("zscores")) { - final_gp = gp; - } - } - } - return final_gp; - } - catch (DaoException e) { - return null; - } - } - - public static Map getExpressionMap(int profileId, String sampleSetId, String sampleIdsKeys) throws DaoException { - - GeneticProfile gp = DaoGeneticProfile.getGeneticProfileById(profileId); - List stableSampleIds = getSampleIds(sampleSetId, sampleIdsKeys); - List sampleIds = new ArrayList(); - for(String sampleId : stableSampleIds) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(gp.getCancerStudyId(), sampleId); - sampleIds.add(sample.getInternalId()); - } - sampleIds.retainAll(DaoSampleProfile.getAllSampleIdsInProfile(profileId)); - - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - Map> mapStr = daoGeneticAlteration.getGeneticAlterationMap(profileId, null); - Map map = new HashMap(mapStr.size()); - for (Map.Entry> entry : mapStr.entrySet()) { - Long gene = entry.getKey(); - Map mapCaseValueStr = entry.getValue(); - double[] values = new double[sampleIds.size()]; - for (int i = 0; i < sampleIds.size(); i++) { - Integer caseId = sampleIds.get(i); - String value = mapCaseValueStr.get(caseId); - Double d; - try { - d = Double.valueOf(value); - } catch (Exception e) { - d = Double.NaN; - } - values[i]=d; - } - - map.put(gene, values); - } - - return map; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ConsoleUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/ConsoleUtil.java deleted file mode 100644 index b5b362270ea..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ConsoleUtil.java +++ /dev/null @@ -1,299 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.IOException; -import java.text.DecimalFormat; -import java.text.NumberFormat; -import java.util.List; - -import org.mskcc.cbio.portal.dao.MySQLbulkLoader; -import org.mskcc.cbio.portal.scripts.UsageException; - -import joptsimple.OptionException; -import joptsimple.OptionParser; -import joptsimple.OptionSet; -import joptsimple.OptionSpec; - -/** - * Misc Utility Methods for Console Applications. - * - * @author Ethan Cerami - */ -public class ConsoleUtil { - private static String msg = ""; - - /** - * Outputs Progress Messages to Console. - * Uses ASNI Terminal Codes - * For future reference, ANSI Codes are here: - * http://www.dee.ufcg.edu.br/~rrbrandt/tools/ansi.html - * - */ - public static synchronized void showProgress() { - if (ProgressMonitor.isShowProgress()) { - int currentValue = ProgressMonitor.getCurValue(); - if (currentValue % 100 == 0) { - System.err.print("."); - } - - // this writes progress every 1000 records - if (currentValue % 1000 == 0) { - NumberFormat format = DecimalFormat.getPercentInstance(); - double percent = ProgressMonitor.getPercentComplete(); - msg = new String("Percentage Complete: " - + format.format(percent)); - System.err.println("\n" + msg); - Runtime rt = Runtime.getRuntime(); - long used = rt.totalMemory() - rt.freeMemory(); - System.err.println("Mem Allocated: " + getMegabytes(rt.totalMemory()) - + ", Mem used: " + getMegabytes(used) + ", Mem free: " - + getMegabytes(rt.freeMemory())); - } - if (currentValue == ProgressMonitor.getMaxValue()) { - System.err.println(); - } - } - } - - public static void showWarnings() { - List warningList = ProgressMonitor.getWarnings(); - if (warningList.size() > 0) { - System.err.println("\nWarnings / Errors:"); - System.err.println("-------------------"); - for (int i = 0; i < warningList.size(); i++) { - System.err.println(i + ". " + warningList.get(i)); - } - } - } - - /** - * Prints messages and warnings. - */ - public static void showMessages() { - showWarnings(); - List debugMessages = ProgressMonitor.getDebugMessages(); - if (debugMessages.size() > 0) { - System.err.println("-------------------"); - for (int i = 0; i < debugMessages.size(); i++) { - System.err.println(debugMessages.get(i)); - } - } - } - - private static String getMegabytes(long bytes) { - double mBytes = (bytes / 1024.0) / 1024.0; - DecimalFormat formatter = new DecimalFormat("#,###,###.###"); - return formatter.format(mBytes) + " MB"; - } - - /** - * Default method to be used when Importer class main method expects only 'data' and 'meta' as mandatory options - * and an optional 'loadMode' parameter - * - * @param args: the same args given to main() method of the tool - * @param description: short description of the tool (to display in the usage line if necessary) - * @param hasLoadMode: set to true to let this method validate whether the command line argument loadMode was given - * - * @return the parsed options - */ - public static OptionSet parseStandardDataAndMetaOptions(String[] args, String description, boolean hasLoadMode) { - // using a real options parser, helps avoid bugs - OptionParser parser = new OptionParser(); - parser.accepts("noprogress", "this option can be given to avoid the messages regarding memory usage and % complete"); - OptionSpec help = parser.accepts( "help", "print this help info" ); - parser.accepts( "data", "profile data file" ).withRequiredArg().describedAs( "data_file.txt" ).ofType( String.class ); - parser.accepts( "meta", "meta (description) file" ).withRequiredArg().describedAs( "meta_file.txt" ).ofType( String.class ); - if (hasLoadMode) { - parser.accepts( "loadMode", "direct (per record) or bulk load of data" ) - .withRequiredArg().describedAs( "[directLoad|bulkLoad (default)]" ).ofType( String.class ); - } - String progName = "importScript"; - - OptionSet options = null; - try { - options = parser.parse( args ); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, - e.getMessage()); - } - - if( options.has( help ) ){ - throw new UsageException(progName, description, parser); - } - - //these extra checks are needed, since withRequiredArg above only indicated that the option - //has a mandatory argument but does not make the option itself mandatory. - if(!options.has("data")) { - throw new UsageException(progName, description, parser, - "Error: 'data' argument required."); - } - - if(!options.has("meta")) { - throw new UsageException(progName, description, parser, - "Error: 'meta' argument required."); - } - - if (hasLoadMode) { - if( options.has( "loadMode" ) ){ - String actionArg = (String) options.valueOf( "loadMode" ); - if (actionArg.equalsIgnoreCase("directLoad")) { - MySQLbulkLoader.bulkLoadOff(); - } else if (actionArg.equalsIgnoreCase( "bulkLoad" )) { - MySQLbulkLoader.bulkLoadOn(); - } else { - throw new UsageException(progName, description, parser, - "Error: unknown loadMode action: " + actionArg); - } - } - else { - throw new UsageException(progName, description, parser, - "Error: 'loadMode' argument required."); - } - } - return options; - } - - - /** - * Default method to be used when Importer class main method expects only 'data' and 'study' as mandatory options - * - * @param args: the same args given to main() method of the tool - * @param description: short description of the tool (to display in the usage line if necessary) - * - * @return the parsed options - */ - public static OptionSet parseStandardDataAndStudyOptions(String[] args, String description) { - // using a real options parser, helps avoid bugs - OptionParser parser = new OptionParser(); - parser.accepts("noprogress", "this option can be given to avoid the messages regarding memory usage and % complete"); - OptionSpec help = parser.accepts( "help", "print this help info" ); - parser.accepts( "data", "profile data file" ).withRequiredArg().describedAs( "data_file.txt" ).ofType( String.class ); - parser.accepts( "study", "cancer study identifier" ).withRequiredArg().describedAs( "e.g. brca_tcga" ).ofType( String.class ); - - String progName = "importScript"; - - OptionSet options = null; - try { - options = parser.parse( args ); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, - e.getMessage()); - } - - if( options.has( help ) ){ - throw new UsageException(progName, description, parser); - } - //these extra checks are needed, since withRequiredArg above only indicated that the option - //has a mandatory argument but does not make the option itself mandatory. - if(!options.has("data")) { - throw new UsageException(progName, description, parser, - "Error: 'data' argument required."); - } - - if(!options.has("study")) { - throw new UsageException(progName, description, parser, - "Error: 'study' argument required."); - } - - return options; - } - - /** - * Default method to be used when Importer class main method expects only 'data' and 'meta' as mandatory options - * and an optional 'loadMode' parameter and an optional 'update-info' parameter - * - * @param args: the same args given to main() method of the tool - * @param description: short description of the tool (to display in the usage line if necessary) - * @param hasLoadMode: set to true to let this method validate whether the command line argument loadMode was given - * - * @return the parsed options - */ - public static OptionSet parseStandardDataAndMetaUpdateOptions(String[] args, String description, boolean hasLoadMode) { - // using a real options parser, helps avoid bugs - OptionParser parser = new OptionParser(); - parser.accepts("noprogress", "this option can be given to avoid the messages regarding memory usage and % complete"); - OptionSpec help = parser.accepts( "help", "print this help info" ); - parser.accepts( "data", "profile data file" ).withRequiredArg().describedAs( "data_file.txt" ).ofType( String.class ); - parser.accepts( "update-info", "Update information for existing entities in the database").withOptionalArg().ofType(String.class); - parser.accepts( "meta", "meta (description) file" ).withRequiredArg().describedAs( "meta_file.txt" ).ofType( String.class ); - if (hasLoadMode) { - parser.accepts( "loadMode", "direct (per record) or bulk load of data" ) - .withRequiredArg().describedAs( "[directLoad|bulkLoad (default)]" ).ofType( String.class ); - } - String progName = "importScript"; - - OptionSet options = null; - try { - options = parser.parse( args ); - } catch (OptionException e) { - throw new UsageException(progName, description, parser, - e.getMessage()); - } - - if( options.has( help ) ){ - throw new UsageException(progName, description, parser); - } - - //these extra checks are needed, since withRequiredArg above only indicated that the option - //has a mandatory argument but does not make the option itself mandatory. - if(!options.has("data")) { - throw new UsageException(progName, description, parser, - "Error: 'data' argument required."); - } - - if(!options.has("meta")) { - throw new UsageException(progName, description, parser, - "Error: 'meta' argument required."); - } - - if (hasLoadMode) { - if( options.has( "loadMode" ) ){ - String actionArg = (String) options.valueOf( "loadMode" ); - if (actionArg.equalsIgnoreCase("directLoad")) { - MySQLbulkLoader.bulkLoadOff(); - } else if (actionArg.equalsIgnoreCase( "bulkLoad" )) { - MySQLbulkLoader.bulkLoadOn(); - } else { - throw new UsageException(progName, description, parser, - "Error: unknown loadMode action: " + actionArg); - } - } - else { - throw new UsageException(progName, description, parser, - "Error: 'loadMode' argument required."); - } - } - return options; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ConvertProfileDataToGeneticEvents.java b/core/src/main/java/org/mskcc/cbio/portal/util/ConvertProfileDataToGeneticEvents.java deleted file mode 100644 index 80ae72f448e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ConvertProfileDataToGeneticEvents.java +++ /dev/null @@ -1,94 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.ArrayList; - -import org.mskcc.cbio.portal.model.GeneticEvent; -import org.mskcc.cbio.portal.model.GeneticEventImpl; -import org.mskcc.cbio.portal.model.ProfileData; -import org.mskcc.cbio.portal.model.ProfileDataSummary; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintSpecification; - -/** - * Utility Class to Convert Profile Data to a Matrix of Genetic Events. - * - * @author Ethan Cerami - */ -public class ConvertProfileDataToGeneticEvents { - // TODO: move this method into ProfileDataSummary - - /** - * Converts a Profile Data Summary Object into a 2D Matrix of Genetic Event Objects. - * - * @param pSummaryData - * Profile Summary Data. - * @param zScoreThreshold - * Z Score Threshold. - * @param geneList - * list of rows of genes to return in the matrix - * @return 2D Matrix of GeneticEvent Objects. - */ - public static GeneticEvent[][] convert(ProfileDataSummary pSummaryData, String[] geneList, - OncoPrintSpecification theOncoPrintSpecification, double zScoreThreshold, double rppaScoreThreshold) { - ProfileData pData = pSummaryData.getProfileData(); - - ArrayList goodGenes = new ArrayList (); - for( String gene : geneList ){ - // TODO: replace with a hash lookup, as pData.getValidGeneList().contains is O(n), so this for-loop is O(n**2) - if (pData.getGeneList().contains( gene )) { - goodGenes.add(gene); - } - } - - GeneticEvent matrix[][] = new GeneticEvent[goodGenes.size()][pData.getCaseIdList().size()]; - int row = 0; - for( String currentGene : goodGenes ){ - - for (int j = 0; j < pData.getCaseIdList().size(); j++) { - String currentCaseId = pData.getCaseIdList().get(j); - String value = pData.getValue(currentGene, currentCaseId); - ValueParser valueParser = ValueParser.generateValueParser( currentGene, value, zScoreThreshold, - rppaScoreThreshold, theOncoPrintSpecification ); - if( null == valueParser){ - System.err.println( "Yikes null valueParser"); - }else{ - GeneticEventImpl event = new GeneticEventImpl(valueParser, currentGene, currentCaseId); - matrix[row][j] = event; - } - } - row++; - } - return matrix; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/DataSetsUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/DataSetsUtil.java deleted file mode 100644 index e3716935d37..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/DataSetsUtil.java +++ /dev/null @@ -1,175 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -// imports -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.AccessControl; -import org.mskcc.cbio.portal.web_api.ProtocolException; - -import java.util.List; -import java.util.HashSet; -import java.util.ArrayList; - -/** - * Utility Class to help generate Data Sets Page. - * - * @author Benjamin Gross. - */ -public class DataSetsUtil { - - // ref to our access control object - private static AccessControl accessControl = SpringUtil.getAccessControl(); - - // ref to total number of samples for al cancer studies - private Integer totalNumberOfSamples; - - // ref to our list of cancer study stats & total num of samples - private List cancerStudyStats; - - private DaoSample daoSample; - private DaoPatient daoPatient; - private DaoSampleList daoSampleList; - - /** - * Constructor (private). - */ - public DataSetsUtil() { - - try { - daoSample = new DaoSample(); - daoPatient = new DaoPatient(); - daoSampleList = new DaoSampleList(); - // totalNumberOfSamples will be set while computing stats - totalNumberOfSamples = 0; - cancerStudyStats = computeCancerStudyStats(); - } - catch (Exception e) { - e.printStackTrace(); - } - } - - /** - * Returns the cancer study stats. - * - * @return List - */ - public List getCancerStudyStats() { return cancerStudyStats; } - - /** - * Gets total number of samples for all studies. - * - * @return Integer - */ - public Integer getTotalNumberOfSamples() { return totalNumberOfSamples; } - - /** - * Routine which constructs and returns a list of CancerStudyStats - * - * @return List - * @throws DaoException Database Error. - * @throws ProtocolException Protocol Error. - */ - private List computeCancerStudyStats() throws DaoException, ProtocolException { - - // what we are returning - List toReturn = new ArrayList(); - - // get list of cancer studies - List cancerStudyList = accessControl.getCancerStudies(); - - // first element is 'all', remove it - cancerStudyList.remove(0); - - // process the list - for (CancerStudy cancerStudy : cancerStudyList) { - String citation = cancerStudy.getCitation(); - if (citation==null) { - citation = ""; - } else { - String pmid = cancerStudy.getPmid(); - if (pmid!=null) { - citation = ""+citation+""; - } - } - // get genetic profiles - int sequenced = getCount(cancerStudy, "_sequenced"); - int cna = getCount(cancerStudy, "_cna"); - int RNASEQ = getRNASEQ(cancerStudy); - int tumorMRNA = getCount(cancerStudy, "_mrna"); - int normal = getCount(cancerStudy, "_normal_mrna"); - int tumorMIRNA = getCount(cancerStudy, "_microrna"); - int methylationHM27 = getCount(cancerStudy, "_methylation_hm27"); - int rppa = getCount(cancerStudy, "_rppa"); - int massSpectrometry = getCount(cancerStudy, "_protein_quantification"); - int complete = getCount(cancerStudy, "_3way_complete"); - int all = getCount(cancerStudy, "_all"); - totalNumberOfSamples += all; - // add to return list - toReturn.add(new CancerStudyStats(cancerStudy.getCancerStudyStableId(), - cancerStudy.getName(), citation, all, sequenced, - cna, RNASEQ, tumorMRNA, normal, tumorMIRNA, - methylationHM27, rppa, complete, massSpectrometry)); - } - - // outta here - return toReturn; - } - - private int getRNASEQ(CancerStudy cancerStudy) throws DaoException { - // Looking for RNA SEQ V2 - Integer count = getCount(cancerStudy, "_rna_seq_v2_mrna"); - - // Looking for RNA SEQ if there is no data in v2 - if(count == null || count == 0) { - count = getCount(cancerStudy, "_rna_seq_mrna"); - } - return count; - } - - private int getCount(CancerStudy cancerStudy, String sampleListSuffix) throws DaoException - { - int count = 0; - - String sampleListID = cancerStudy.getCancerStudyStableId() + sampleListSuffix; - SampleList desiredSampleList = daoSampleList.getSampleListByStableId(sampleListID); - - if (desiredSampleList != null) { - // NOTE - as of 12/12/14, patient lists contain sample ids - count = desiredSampleList.getSampleList().size(); - } - - return count; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/DatabaseProperties.java b/core/src/main/java/org/mskcc/cbio/portal/util/DatabaseProperties.java deleted file mode 100644 index e2ec2753bec..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/DatabaseProperties.java +++ /dev/null @@ -1,147 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.util.GlobalProperties; - -/** - * Stores db props (name, id, pw, host) from portal.properties - * and makes them accessible. - */ -public class DatabaseProperties { - private String dbHost; - private String dbUser; - private String dbPassword; - private String dbName; - private String dbEncryptedKey; - private String dbDriverClassName; - private String dbUseSSL; - private String dbEnablePooling; - private String connectionURL; - - // No production keys stored in filesystem or code: digest the key; put it in properties; load it into dbms on startup - private static DatabaseProperties dbProperties; - - public static DatabaseProperties getInstance() { - if (dbProperties == null) { - dbProperties = new DatabaseProperties(); - // Get DB Properties from portal.properties. - dbProperties.setDbHost(GlobalProperties.getProperty("db.host")); - dbProperties.setDbName(GlobalProperties.getProperty("db.portal_db_name")); - dbProperties.setDbUser(GlobalProperties.getProperty("db.user")); - dbProperties.setDbPassword(GlobalProperties.getProperty("db.password")); - dbProperties.setDbEncryptedKey(GlobalProperties.getProperty("db.encryptedKey")); - dbProperties.setDbDriverClassName(GlobalProperties.getProperty("db.driver")); - dbProperties.setDbUseSSL(GlobalProperties.getProperty("db.use_ssl")); - dbProperties.setDbEnablePooling(GlobalProperties.getProperty("db.enable_pooling")); - dbProperties.setConnectionURL(GlobalProperties.getProperty("db.connection_string")); - } - return dbProperties; - } - - public String getDbEncryptedKey() { - return dbEncryptedKey; - } - - public void setDbEncryptedKey(String dbEncryptedKey) { - this.dbEncryptedKey = dbEncryptedKey; - } - - private DatabaseProperties() { - } - - public String getDbHost() { - return dbHost; - } - - public void setDbHost(String dbHost) { - this.dbHost = dbHost; - } - - public String getDbUser() { - return dbUser; - } - - public void setDbUser(String dbUser) { - this.dbUser = dbUser; - } - - public String getDbPassword() { - return dbPassword; - } - - public void setDbPassword(String dbPassword) { - this.dbPassword = dbPassword; - } - - public String getDbName() { - return dbName; - } - - public void setDbName(String dbName) { - this.dbName = dbName; - } - - public String getDbDriverClassName() { - return dbDriverClassName; - } - - public void setDbDriverClassName(String dbDriverClassName) { - this.dbDriverClassName = dbDriverClassName; - } - - public String getDbUseSSL() { - return dbUseSSL; - } - - public void setDbUseSSL(String dbUseSSL) { - this.dbUseSSL = dbUseSSL; - } - - public String getDbEnablePooling() { - return dbEnablePooling; - } - - public void setDbEnablePooling(String dbEnablePooling) { - this.dbEnablePooling = dbEnablePooling; - } - - public String getConnectionURL() { - return connectionURL; - } - - public void setConnectionURL(String connectionURL) { - this.connectionURL = connectionURL; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/DebugHrrsFilter.java b/core/src/main/java/org/mskcc/cbio/portal/util/DebugHrrsFilter.java deleted file mode 100644 index 1dbb27bd942..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/DebugHrrsFilter.java +++ /dev/null @@ -1,118 +0,0 @@ -/* - * Copyright (c) 2019 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.util; - - -import com.vlkan.hrrs.api.HttpRequestRecordWriter; -import com.vlkan.hrrs.api.HttpRequestRecordWriterTarget; -import com.vlkan.hrrs.serializer.base64.Base64HttpRequestRecord; -import com.vlkan.hrrs.serializer.base64.Base64HttpRequestRecordWriter; -import com.vlkan.hrrs.serializer.base64.guava.GuavaBase64Encoder; -import com.vlkan.hrrs.serializer.file.HttpRequestRecordWriterRotatingFileTarget; -import com.vlkan.hrrs.servlet.HrrsFilter; -import com.vlkan.rfos.RotationConfig; -import com.vlkan.rfos.policy.DailyRotationPolicy; - -import java.io.*; -import java.util.*; -import javax.servlet.*; -import org.apache.commons.lang3.StringUtils; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.cbioportal.model.*; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.*; -import org.springframework.context.annotation.Bean; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.authority.AuthorityUtils; -import org.springframework.stereotype.Component; - -public class DebugHrrsFilter extends HrrsFilter { - - private static final Logger LOGGER = LoggerFactory.getLogger(DebugHrrsFilter.class); - - private static final String DEFAULT_HRRS_LOGGING_NAME = "/hrrs-logging.csv"; - - private final HttpRequestRecordWriter writer; - - private final HttpRequestRecordWriterTarget writerTarget; - - public DebugHrrsFilter() { - boolean enableHrrsLogging = Boolean.valueOf(GlobalProperties.getProperty("hrrs.enable.logging")); - // only initialize writers/writing target if logging is enabled in properties file - if (enableHrrsLogging) { - RotationConfig rotationConfig = createRotationConfig(); - this.writerTarget = new HttpRequestRecordWriterRotatingFileTarget(rotationConfig, Base64HttpRequestRecord.CHARSET); - this.writer = new Base64HttpRequestRecordWriter(writerTarget, GuavaBase64Encoder.getInstance()); - this.setEnabled(enableHrrsLogging); - } else { - this.writer = null; - this.writerTarget = null; - } - } - - public HttpRequestRecordWriterTarget getWriterTarget() { - return writerTarget; - } - - @Override - protected HttpRequestRecordWriter getWriter() { - return writer; - } - - private static RotationConfig createRotationConfig() { - // default to tmpdir if logging is enabled but no logging path is provided - String hrrsLoggingFilePath = (!StringUtils.isEmpty(GlobalProperties.getProperty("hrrs.logging.filepath")) ? GlobalProperties.getProperty("hrrs.logging.filepath") : System.getProperty("java.io.tmpdir") + DEFAULT_HRRS_LOGGING_NAME); - String file = new File(hrrsLoggingFilePath).getAbsolutePath(); - String filePattern = new File(hrrsLoggingFilePath + "-%d{yyyyMMdd-HHmmss-SSS}.csv").getAbsolutePath(); - RotationConfig rotationConfig = RotationConfig - .builder() - .file(file) - .filePattern(filePattern) - .policy(DailyRotationPolicy.getInstance()) - .build(); - return rotationConfig; - } - - @Override - public void destroy() { - try { - if (writerTarget != null) { - writerTarget.close(); - } - } catch (IOException error) { - LOGGER.error("failed closing writer", error); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/Direction.java b/core/src/main/java/org/mskcc/cbio/portal/util/Direction.java deleted file mode 100644 index 3cf8a6d0eef..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/Direction.java +++ /dev/null @@ -1,40 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -/** - * use to indicate whether a value (e.g., mRNA) is higher or lower than an upper or lower threshold; - * TODO: collect all enums in one class, and then reference them as inner classes to avoid ridiculously tiny classes like this. - * @author Arthur Goldberg - */ -public enum Direction { higher, lower }; diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/DoubleUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/DoubleUtil.java deleted file mode 100644 index a3a410c9e08..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/DoubleUtil.java +++ /dev/null @@ -1,69 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -/** - * Derived from the web: http://stackoverflow.com/questions/356807/java-double-comparison-epsilon - */ -public class DoubleUtil { - - private final static double EPSILON = 0.00001; - /** - * Returns true if two doubles are considered equal. Tests if the absolute - * difference between two doubles has a difference less then .00001. This - * should be fine when comparing prices, because prices have a precision of - * .001. - * - * @param a double to compare. - * @param b double to compare. - * @return true true if two doubles are considered equal. - */ - public static boolean equals(double a, double b){ - return a == b ? true : Math.abs(a - b) < EPSILON; - } - /** - * Returns true if two doubles are considered equal. Tests if the absolute - * difference between the two doubles has a difference less then a given - * double (epsilon). Determining the given epsilon is highly dependant on the - * precision of the doubles that are being compared. - * - * @param a double to compare. - * @param b double to compare - * @param epsilon double which is compared to the absolute difference of two - * doubles to determine if they are equal. - * @return true if a is considered equal to b. - */ - public static boolean equals(double a, double b, double epsilon){ - return a == b ? true : Math.abs(a - b) < epsilon; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/DynamicState.java b/core/src/main/java/org/mskcc/cbio/portal/util/DynamicState.java deleted file mode 100644 index 870c0dbdf96..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/DynamicState.java +++ /dev/null @@ -1,73 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import com.google.common.base.Strings; - -/** - * A Java Singleton implemented as an enum to support a common dynamic state across the cBioPortal application - * @author criscuof - */ -public enum DynamicState { - INSTANCE; - - private String currentUser = ""; - private String failedUser =""; - - public void setCurrentUser(String aUser) { - // n.b allow property yo be set to null or empty - currentUser = aUser; - failedUser =""; - } - - public String getCurrentUser() { - return currentUser; - } - - - /* - failedUser attribute represents a Google+ username that failed cBio authorization - once set, it can only be accessed once before being cleared - */ - public void setFailedUser(String aUser){ - failedUser = (Strings.isNullOrEmpty(failedUser))?aUser:"unknown"; - } - - public String getFailedUser(){ - String s = failedUser; - failedUser=""; - return s; - } - - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/EnrichmentsAnalysisUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/EnrichmentsAnalysisUtil.java deleted file mode 100644 index c1c4adac537..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/EnrichmentsAnalysisUtil.java +++ /dev/null @@ -1,673 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.*; - -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.node.ObjectNode; - -import org.apache.commons.math3.stat.StatUtils; -import org.apache.commons.math3.stat.descriptive.DescriptiveStatistics; -import org.apache.commons.math3.stat.inference.TestUtils; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.dao.DaoReferenceGenome; -import org.mskcc.cbio.portal.dao.DaoReferenceGenomeGene; -import org.mskcc.cbio.portal.dao.DaoGeneticAlteration; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.ReferenceGenome; -import org.mskcc.cbio.portal.model.Gene; -import org.mskcc.cbio.portal.stats.FisherExact; - -/** - * pre-calculate/re-format input raw data based on different profiles - * then return result (p-value) of fisher exact test - * - * @author suny1 - * @date Mar 16, 2015 - */ -public class EnrichmentsAnalysisUtil implements DaoGeneticAlteration.AlterationProcesser { - - private String geneticProfileStableId; - private GeneticAlterationType geneticAlterationType; - private String[] queriedGenes; - private String copyNumType = "none"; - private List alteredSampleIds; - private List unalteredSampleIds; - - private ObjectMapper mapper = new ObjectMapper(); - - private final String COL_NAME_GENE = "Gene"; - private final String COL_NAME_CYTOBAND = "Cytoband"; - private final String COL_NAME_PCT_ALTERED = "percentage of alteration in altered group"; - private final String COL_NAME_PCT_UNALTERED = "percentage of alteration in unaltered group"; - private final String COL_NAME_RATIO = "Log Ratio"; - private final String COL_NAME_DIRECTION = "Direction/Tendency"; - private final String COL_NAME_P_VALUE = "p-Value"; - private final String COL_NAME_MEAN_ALTERED = "mean of alteration in altered group"; - private final String COL_NAME_MEAN_UNALTERED = "mean of alteration in unaltered group"; - private final String COL_NAME_STDEV_ALTERED = "standard deviation of alteration in altered group"; - private final String COL_NAME_STDEV_UNALTERED = "standard deviation of alteration in unaltered group"; - - public EnrichmentsAnalysisUtil( - String geneticProfileStableId, - GeneticAlterationType geneticAlterationType, - String copyNumType, - List alteredSampleIds, - List unalteredSampleIds, - String[] queriedGenes) throws DaoException, IllegalArgumentException { - this.geneticProfileStableId = geneticProfileStableId; - this.geneticAlterationType = geneticAlterationType; - this.copyNumType = copyNumType; - this.alteredSampleIds = alteredSampleIds; - this.unalteredSampleIds = unalteredSampleIds; - this.queriedGenes = queriedGenes; - } - - public ObjectNode processMutHm(long entrezGeneId, ArrayList sampleList, Map mutHm) { - ObjectNode _datum = mapper.createObjectNode(); - //create map to pair sample and value - HashMap mapSampleValue = new HashMap<>(); - for (Integer sampleId : sampleList) { //Assign every sample (included non mutated ones) values -- mutated -> Mutation Type, non-mutated -> "Non" - String mutationStatus = "Non"; - String tmpStr = new StringBuilder().append(Integer.toString(sampleId)).append(Long.toString(entrezGeneId)).toString(); - if (mutHm.containsKey(tmpStr)) mutationStatus = "Mutated"; - mapSampleValue.put(sampleId, mutationStatus); - } - //remove empty entry - Iterator it = mapSampleValue.entrySet().iterator(); - while (it.hasNext()) { - Map.Entry pair = (Map.Entry) it.next(); - if (pair.getValue().equals("NA") || pair.getValue().equals("NaN") || pair.getValue().equals("null")) { - it.remove(); - } - } - //get Gene Name and Cytoband - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - Gene gene = daoGeneOptimized.getGene(entrezGeneId); - String geneName = ((CanonicalGene) gene).getHugoGeneSymbolAllCaps(); - String cytoband = getCytoband(((CanonicalGene) gene).getGeneticEntityId(), geneticProfileStableId); - - //statistics analysis - if (!(Arrays.asList(queriedGenes)).contains(geneName)) { //remove queried genes from result - _datum.put(COL_NAME_GENE, geneName); - _datum.put(COL_NAME_CYTOBAND, cytoband); - _datum.put(COL_NAME_PCT_ALTERED, Integer.toString(countAltered(mapSampleValue, "altered")) + "////" + Double.toString(calcPct(mapSampleValue, "altered"))); - _datum.put(COL_NAME_PCT_UNALTERED, Integer.toString(countAltered(mapSampleValue, "unaltered")) + "////" + Double.toString(calcPct(mapSampleValue, "unaltered"))); - _datum.put(COL_NAME_RATIO, calcRatio( - calcPct(mapSampleValue, "altered"), calcPct(mapSampleValue, "unaltered"))); - _datum.put(COL_NAME_DIRECTION, "place holder"); //calculation is done by the front-end - _datum.put(COL_NAME_P_VALUE, calcPval(mapSampleValue, geneticProfileStableId)); - if (!(calcPct(mapSampleValue, "altered") == 0.0 && - calcPct(mapSampleValue, "unaltered") == 0.0) && - !Double.isNaN(calcPval(mapSampleValue, geneticProfileStableId))) { - return _datum; - } - } - return null; - } - - @Override - public ObjectNode process(long entrezGeneId, String[] values, ArrayList sampleList) { - ObjectNode _datum = mapper.createObjectNode(); - //create map to pair sample and value - HashMap mapSampleValue = new HashMap<>(); - for (int i = 0; i < values.length; i++) { - String value = values[i]; - Integer sampleId = sampleList.get(i); - mapSampleValue.put(sampleId, value); - } - //remove empty entry - Iterator it = mapSampleValue.entrySet().iterator(); - while (it.hasNext()) { - Map.Entry pair = (Map.Entry) it.next(); - if (pair.getValue().equals("NA") || pair.getValue().equals("NaN") || pair.getValue().equals("null")) { - it.remove(); - } - } - //get Gene Name and Cytoband - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - Gene gene = daoGeneOptimized.getGene(entrezGeneId); - String geneName = ((CanonicalGene) gene).getHugoGeneSymbolAllCaps(); - String cytoband = getCytoband(((CanonicalGene) gene).getGeneticEntityId(), geneticProfileStableId); - if (cytoband == null || cytoband.length() == 0) { - cytoband = "--"; - } - //statistics analysis - if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - if (!(Arrays.asList(queriedGenes)).contains(geneName)) { //remove queried genes from result - _datum.put(COL_NAME_GENE, geneName); - _datum.put(COL_NAME_CYTOBAND, cytoband); - _datum.put(COL_NAME_PCT_ALTERED, Integer.toString(countAltered(mapSampleValue, "altered")) + "////" + Double.toString(calcPct(mapSampleValue, "altered"))); - _datum.put(COL_NAME_PCT_UNALTERED, Integer.toString(countAltered(mapSampleValue, "unaltered")) + "////" + Double.toString(calcPct(mapSampleValue, "unaltered"))); - _datum.put(COL_NAME_RATIO, calcRatio( - calcPct(mapSampleValue, "altered"), calcPct(mapSampleValue, "unaltered"))); - _datum.put(COL_NAME_DIRECTION, "place holder"); //calculation is done by the front-end - _datum.put(COL_NAME_P_VALUE, calcPval(mapSampleValue, geneticProfileStableId)); - if (!(calcPct(mapSampleValue, "altered") == 0.0 && - calcPct(mapSampleValue, "unaltered") == 0.0) && - !Double.isNaN(calcPval(mapSampleValue, geneticProfileStableId))) { - return _datum; - } - } - } else if (geneticAlterationType == GeneticAlterationType.MRNA_EXPRESSION) { - _datum.put(COL_NAME_GENE, geneName); - _datum.put(COL_NAME_CYTOBAND, cytoband); - _datum.put(COL_NAME_MEAN_ALTERED, calcMean(mapSampleValue, "altered", geneticProfileStableId)); - _datum.put(COL_NAME_MEAN_UNALTERED, calcMean(mapSampleValue, "unaltered", geneticProfileStableId)); - _datum.put(COL_NAME_STDEV_ALTERED, calcSTDev(mapSampleValue, "altered", geneticProfileStableId)); - _datum.put(COL_NAME_STDEV_UNALTERED, calcSTDev(mapSampleValue, "unaltered", geneticProfileStableId)); - _datum.put(COL_NAME_P_VALUE, calcPval(mapSampleValue, geneticProfileStableId)); - if (!Double.isNaN(calcPval(mapSampleValue, geneticProfileStableId))) { - return _datum; - } - } else if (geneticAlterationType == GeneticAlterationType.PROTEIN_LEVEL) { - _datum.put(COL_NAME_GENE, geneName); - _datum.put(COL_NAME_CYTOBAND, cytoband); - _datum.put(COL_NAME_MEAN_ALTERED, calcMean(mapSampleValue, "altered", geneticProfileStableId)); - _datum.put(COL_NAME_MEAN_UNALTERED, calcMean(mapSampleValue, "unaltered", geneticProfileStableId)); - _datum.put(COL_NAME_STDEV_ALTERED, calcSTDev(mapSampleValue, "altered", geneticProfileStableId)); - _datum.put(COL_NAME_STDEV_UNALTERED, calcSTDev(mapSampleValue, "unaltered", geneticProfileStableId)); - _datum.put(COL_NAME_P_VALUE, calcPval(mapSampleValue, geneticProfileStableId)); - if (!Double.isNaN(calcPval(mapSampleValue, geneticProfileStableId))) { - return _datum; - } - } - return null; - } - - private String calcRatio(double pct1, double pct2) { - if (pct1 != 0 && pct2 != 0) { - if ((Math.log(pct1 / pct2) / Math.log(2)) > 10) { - return ">10"; - } else if (Math.log(pct1 / pct2) / Math.log(2) < -10) { - return "<-10"; - } else { - return Double.toString(Math.log(pct1 / pct2) / Math.log(2)); - } - } else if (pct1 == 0 && pct2 != 0) { - return "<-10"; - } else if (pct1 != 0 && pct2 == 0) { - return ">10"; - } else { - return "--"; - } - } - - private double calcMean(HashMap singleGeneCaseValueMap, String groupType, String profileStableId) { // group type: altered or unaltered - switch (groupType) { - case "altered": - int _index_altered = 0; - double[] alteredArray = new double[alteredSampleIds.size()]; - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - if (profileStableId.indexOf("rna_seq") != -1) { - try { - alteredArray[_index_altered] = Math.log(Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId))) / Math.log(2); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else { - try { - alteredArray[_index_altered] = Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId)); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - _index_altered += 1; - } - } - return StatUtils.mean(alteredArray); - case "unaltered": - int _index_unaltered = 0; - double[] unalteredArray = new double[unalteredSampleIds.size()]; - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - if (profileStableId.indexOf("rna_seq") != -1) { - try { - unalteredArray[_index_unaltered] = Math.log(Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId))) / Math.log(2); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else { - try { - unalteredArray[_index_unaltered] = Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId)); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - _index_unaltered += 1; - } - } - return StatUtils.mean(unalteredArray); - default: - return Double.NaN; //error - } - } - - private double calcSTDev(HashMap singleGeneCaseValueMap, String groupType, String profileStableId) { - switch (groupType) { - case "altered": - DescriptiveStatistics stats_altered = new DescriptiveStatistics(); - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - if (profileStableId.indexOf("rna_seq") != -1) { - try { - stats_altered.addValue(Math.log(Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId))) / Math.log(2)); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else { - try { - stats_altered.addValue(Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId))); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - } - return stats_altered.getStandardDeviation(); - case "unaltered": - DescriptiveStatistics stats_unaltered = new DescriptiveStatistics(); - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - if (profileStableId.indexOf("rna_seq") != -1) { - try { - stats_unaltered.addValue(Math.log(Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId))) / Math.log(2)); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else { - try { - stats_unaltered.addValue(Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId))); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - } - return stats_unaltered.getStandardDeviation(); - default: - return Double.NaN; //error - } - } - - //count alterations in different groups (altered/unaltered) (only for mutation tab and cna tab) - private int countAltered(HashMap singleGeneCaseValueMap, String groupType) { - int _count = 0; //altered samples count - if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION && copyNumType.equals("del")) { - switch (groupType) { - case "altered": - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId)) == -2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - break; - case "unaltered": - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId)) == -2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - break; - } - } else if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION && copyNumType.equals("amp")) { - switch (groupType) { - case "altered": - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId)) == 2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - break; - case "unaltered": - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId)) == 2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - break; - } - } else if (geneticAlterationType == GeneticAlterationType.MUTATION_EXTENDED) { - switch (groupType) { - case "altered": - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - if (!singleGeneCaseValueMap.get(alteredSampleId).equals("Non")) { - _count += 1; - } - } - } - break; - case "unaltered": - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - if (!singleGeneCaseValueMap.get(unalteredSampleId).equals("Non")) { - _count += 1; - } - } - } - break; - } - } - return _count; - } - - private double calcPct(HashMap singleGeneCaseValueMap, String groupType) { // group type: altered or unaltered - double _result_pct = 0, _count = 0; //altered samples count - if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION && copyNumType.equals("del")) { - switch (groupType) { - case "altered": - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId)) == -2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - _result_pct = _count / alteredSampleIds.size(); - break; - case "unaltered": - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId)) == -2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - _result_pct = _count / unalteredSampleIds.size(); - break; - } - } else if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION && copyNumType.equals("amp")) { - switch (groupType) { - case "altered": - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId)) == 2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - _result_pct = _count / alteredSampleIds.size(); - break; - case "unaltered": - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - try { - if (Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId)) == 2.0) { - _count += 1; - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - } - _result_pct = _count / unalteredSampleIds.size(); - break; - } - } else if (geneticAlterationType == GeneticAlterationType.MUTATION_EXTENDED) { - switch (groupType) { - case "altered": - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - if (!singleGeneCaseValueMap.get(alteredSampleId).equals("Non")) { - _count += 1; - } - } - } - _result_pct = _count / alteredSampleIds.size(); - break; - case "unaltered": - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - if (!singleGeneCaseValueMap.get(unalteredSampleId).equals("Non")) { - _count += 1; - } - } - } - _result_pct = _count / unalteredSampleIds.size(); - break; - } - } - return _result_pct; - } - - private double calcPval(HashMap singleGeneCaseValueMap, String profileStableId) - throws IllegalArgumentException { - double _p_value = 0.0; - if (geneticAlterationType == GeneticAlterationType.MUTATION_EXTENDED || geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - _p_value = runFisherExactTest(singleGeneCaseValueMap); - } else if (geneticAlterationType == GeneticAlterationType.MRNA_EXPRESSION || geneticAlterationType == GeneticAlterationType.PROTEIN_LEVEL) { - _p_value = runTTest(singleGeneCaseValueMap, profileStableId); - } - return _p_value; - } - - private double runTTest(HashMap singleGeneCaseValueMap, String profileStableId) throws IllegalArgumentException { - double[] unalteredArray = new double[unalteredSampleIds.size()]; - double[] alteredArray = new double[alteredSampleIds.size()]; - int _index_unaltered = 0, _index_altered = 0; - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - if (profileStableId.indexOf("rna_seq") != -1) { - try { - alteredArray[_index_altered] = Math.log(Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId))) / Math.log(2); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else { - try { - alteredArray[_index_altered] = Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId)); - } catch (NumberFormatException e) { - e.getStackTrace(); - } - } - _index_altered += 1; - } - } - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - if (profileStableId.indexOf("rna_seq") != -1) { - try { - unalteredArray[_index_unaltered] = Math.log(Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId))) / Math.log(2); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else { - try { - unalteredArray[_index_unaltered] = Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId)); - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } - _index_unaltered += 1; - } - } - if (alteredArray.length < 2 || unalteredArray.length < 2) { - return Double.NaN; - } else { - double pvalue = TestUtils.tTest(alteredArray, unalteredArray); - return pvalue; - } - } - - private double runFisherExactTest(HashMap singleGeneCaseValueMap) { - int a = 0; //non altered - int b = 0; //x non altered, y altered - int c = 0; //x altered, y non altered - int d = 0; //both alered - for (Integer alteredSampleId : alteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(alteredSampleId)) { - if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - try { - Double value = Double.parseDouble(singleGeneCaseValueMap.get(alteredSampleId)); - if (copyNumType.equals("del")) { - if (value == -2.0) { - d += 1; - } else { - c += 1; - } - } else if (copyNumType.equals("amp")) { - if (value == 2.0) { - d += 1; - } else { - c += 1; - } - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else if (geneticAlterationType == GeneticAlterationType.MUTATION_EXTENDED) { - String value = singleGeneCaseValueMap.get(alteredSampleId); - if (value.equals("Non")) { - c += 1; - } else { - d += 1; - } - } - } - } - - for (Integer unalteredSampleId : unalteredSampleIds) { - if (singleGeneCaseValueMap.containsKey(unalteredSampleId)) { - if (geneticAlterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - try { - Double value = Double.parseDouble(singleGeneCaseValueMap.get(unalteredSampleId)); - if (copyNumType.equals("del")) { - if (value == -2.0) { - b += 1; - } else { - a += 1; - } - } else if (copyNumType.equals("amp")) { - if (value == 2.0) { - b += 1; - } else { - a += 1; - } - } - } catch (NumberFormatException e) { - e.getStackTrace(); - //TODO: add proper handling of this situation - } - } else if (geneticAlterationType == GeneticAlterationType.MUTATION_EXTENDED) { - String value = singleGeneCaseValueMap.get(unalteredSampleId); - if (value.equals("Non")) { - a += 1; - } else { - b += 1; - } - } - } - } - FisherExact fisher = new FisherExact(a + b + c + d); - return fisher.getTwoTailedP(a, b, c, d); - } - - private String getCytoband(int geneticEntityId, String geneticProfileStableId) { - try { - int cancerStudyId = DaoGeneticProfile.getGeneticProfileByStableId(geneticProfileStableId).getCancerStudyId(); - String genomeName = null; - try { - genomeName = DaoCancerStudy.getCancerStudyByInternalId(cancerStudyId).getReferenceGenome(); - } catch (NullPointerException ne) { - genomeName = GlobalProperties.getReferenceGenomeName(); - } - int genomeId = DaoReferenceGenome.getReferenceGenomeByGenomeName(genomeName).getReferenceGenomeId(); - return DaoReferenceGenomeGene.getInstance().getGene(geneticEntityId, genomeId).getCytoband(); - } catch (DaoException e) { - return null; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/EqualsUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/EqualsUtil.java deleted file mode 100644 index 92edba25eb1..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/EqualsUtil.java +++ /dev/null @@ -1,97 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -/** - * Collected methods which allow easy implementation of equals. - * - * From http://www.javapractices.com/topic/TopicAction.do?Id=17 - * - * Example use case in a class called Car: - * 
    - public boolean equals(Object aThat){
-   if ( this == aThat ) return true;
-   if ( !(aThat instanceof Car) ) return false;
-   Car that = (Car)aThat;
-   return
-     EqualsUtil.areEqual(this.fName, that.fName) &&
-     EqualsUtil.areEqual(this.fNumDoors, that.fNumDoors) &&
-     EqualsUtil.areEqual(this.fGasMileage, that.fGasMileage) &&
-     EqualsUtil.areEqual(this.fColor, that.fColor) &&
-     Arrays.equals(this.fMaintenanceChecks, that.fMaintenanceChecks); //array!
- }
- *
    - * - * Arrays are not handled by this class. - * This is because the Arrays.equals methods should be used for - * array fields. - */ - public final class EqualsUtil { - - static public boolean areEqual(boolean aThis, boolean aThat){ - //System.out.println("boolean"); - return aThis == aThat; - } - - static public boolean areEqual(char aThis, char aThat){ - //System.out.println("char"); - return aThis == aThat; - } - - static public boolean areEqual(long aThis, long aThat){ - /* - * Note that byte, short, and int are handled by this method, through - * implicit conversion. - */ - return aThis == aThat; - } - - static public boolean areEqual(float aThis, float aThat){ - return Float.floatToIntBits(aThis) == Float.floatToIntBits(aThat); - } - - static public boolean areEqual(double aThis, double aThat){ - return Double.doubleToLongBits(aThis) == Double.doubleToLongBits(aThat); - } - - /** - * Possibly-null object field. - * - * Includes type-safe enumerations and collections, but does not include - * arrays. See class comment. - */ - static public boolean areEqual(Object aThis, Object aThat){ - return aThis == null ? aThat == null : aThis.equals(aThat); - } - } - diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ExtendedMutationUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/ExtendedMutationUtil.java deleted file mode 100644 index f4f61b59844..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ExtendedMutationUtil.java +++ /dev/null @@ -1,428 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.maf.MafRecord; -import org.mskcc.cbio.maf.TabDelimitedFileUtil; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ExtendedMutation; - -import java.util.Arrays; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -/** - * Utility class related to ExtendedMutation. - */ -public class ExtendedMutationUtil { - // originally NA (case ignored) was the only value for empty values in this column, - // but [Not Available] occurs in many TCGA studies. - // TODO if this list grows, create NotAvailableValues enum like in ImportClinicalData.java - public static final List NOT_AVAILABLE = Arrays.asList("NA", "[Not Available]"); - - public static String getCaseId(String barCode) { - // process bar code - // an example bar code looks like this: TCGA-13-1479-01A-01W - - String barCodeParts[] = barCode.split("-"); - - String caseId = null; - - try { - caseId = barCodeParts[0] + "-" + barCodeParts[1] + "-" + barCodeParts[2]; - - // the following condition was prompted by case ids coming from - // private cancer studies (like SKCM_BROAD) with case id's of - // the form MEL-JWCI-WGS-XX or MEL-Ma-Mel-XX or MEL-UKRV-Mel-XX - if (!barCode.startsWith("TCGA") && - barCodeParts.length == 4) { - caseId += "-" + barCodeParts[3]; - } - } catch (ArrayIndexOutOfBoundsException e) { - caseId = barCode; - } - - return caseId; - } - - /** - * Determines the most accurate protein change value for the given mutation. - * - * If there is an annotator value, returns that value. - * If no annotator value, then tries Amino Acid Change value. - * If none of the above is valid then returns "MUTATED". - * - * @param parts current mutation as split parts of the line - * @param record MAF record for the current line - * @return most accurate protein change - */ - public static String getProteinChange(String[] parts, MafRecord record) { - // try annotator value first - String proteinChange = record.getProteinChange(); - - // if protein change is not valid, try amino acid change value - if (!isValidProteinChange(proteinChange)) { - proteinChange = record.getAminoAcidChange(); - } - - // if none is valid, then use the string "MUTATED" - if (!isValidProteinChange(proteinChange)) { - proteinChange = "MUTATED"; - } - - // also remove the starting "p." string if any - proteinChange = normalizeProteinChange(proteinChange); - - return proteinChange; - } - - /** - * Removes the starting "p." (if any) from the given - * amino acid change string. - * - * @param aminoAcidChange aa change string to be normalized - * @return normalized aa change string - */ - public static String normalizeProteinChange(String aminoAcidChange) { - String pDot = "p."; - - // remove the starting "p." string if any - if (aminoAcidChange.startsWith(pDot)) { - aminoAcidChange = aminoAcidChange.substring(pDot.length()); - } - - return aminoAcidChange; - } - - public static int getProteinPosStart(String proteinPosition, String proteinChange) { - // parts[0] is the protein start-end positions, parts[1] is the length - String[] parts = proteinPosition.split("/"); - - int position = TabDelimitedFileUtil.getPartInt(0, parts[0].split("-")); - - // there is a case where the protein change is "-" - if (position == TabDelimitedFileUtil.NA_INT) { - // try to extract it from protein change value - Map annotation = annotateProteinChange(proteinChange); - - if (annotation.get("start") != null) { - position = annotation.get("start"); - } - } - - return position; - } - - public static int getProteinPosEnd(String proteinPosition, String proteinChange) { - // parts[0] is the protein start-end positions, parts[1] is the length - String[] parts = proteinPosition.split("/"); - - int end = TabDelimitedFileUtil.getPartInt(1, parts[0].split("-")); - - // if no end position is provided, - // then use start position as end position - if (end == -1) { - Map annotation = annotateProteinChange(proteinChange); - if (annotation.get("end") != null) { - end = annotation.get("end"); - } - } - - return end; - } - - public static boolean isValidProteinChange(String proteinChange) { - boolean invalid = proteinChange == null || - proteinChange.length() == 0 || - proteinChange.equalsIgnoreCase("NULL") || - NOT_AVAILABLE.stream().anyMatch(s -> s.equalsIgnoreCase(proteinChange)); - return !invalid; - } - - public static boolean isAcceptableMutation(String mutationType) { - // check for null or NA values - if (mutationType == null || - mutationType.length() == 0 || - mutationType.equals("NULL") || - mutationType.equals(TabDelimitedFileUtil.NA_STRING)) { - return false; - } - - // check for the type - boolean silent = mutationType.toLowerCase().startsWith("silent"); - boolean loh = mutationType.toLowerCase().startsWith("loh"); - boolean wildtype = mutationType.toLowerCase().startsWith("wildtype"); - boolean utr3 = mutationType.toLowerCase().startsWith("3'utr"); - boolean utr5 = mutationType.toLowerCase().startsWith("5'utr"); - boolean flank5 = mutationType.toLowerCase().startsWith("5'flank"); - boolean igr = mutationType.toLowerCase().startsWith("igr"); - boolean rna = mutationType.equalsIgnoreCase("rna"); - - return !(silent || loh || wildtype || utr3 || utr5 || flank5 || igr || rna); - } - - public static String getMutationType(MafRecord record) { - String mutationType = record.getMafVariantClassification(); - - if (mutationType == null || - mutationType.length() == 0 || - mutationType.equals("NULL") || - mutationType.equals(TabDelimitedFileUtil.NA_STRING)) { - mutationType = record.getVariantClassification(); - } - - return mutationType; - } - - public static Integer getTumorAltCount(MafRecord record) { - Integer result = null; - - if (record.getTumorAltCount() != TabDelimitedFileUtil.NA_INT) { - result = record.getTumorAltCount(); - } else if(record.getTVarCov() != TabDelimitedFileUtil.NA_INT) { - result = record.getTVarCov(); - } else if((record.getTumorDepth() != TabDelimitedFileUtil.NA_INT) && - (record.getTumorVaf() != TabDelimitedFileUtil.NA_INT)) { - result = Math.round(record.getTumorDepth() * record.getTumorVaf()); - } - - return result; - } - - public static Integer getTumorRefCount(MafRecord record) { - Integer result = null; - - if (record.getTumorRefCount() != TabDelimitedFileUtil.NA_INT) { - result = record.getTumorRefCount(); - } else if((record.getTVarCov() != TabDelimitedFileUtil.NA_INT) && - (record.getTTotCov() != TabDelimitedFileUtil.NA_INT)) { - result = record.getTTotCov()-record.getTVarCov(); - } else if((record.getTumorDepth() != TabDelimitedFileUtil.NA_INT) && - (record.getTumorVaf() != TabDelimitedFileUtil.NA_INT)) { - result = record.getTumorDepth() - Math.round(record.getTumorDepth() * record.getTumorVaf()); - } - - return result; - } - - public static Integer getNormalAltCount(MafRecord record) { - Integer result = null; - - if (record.getNormalAltCount() != TabDelimitedFileUtil.NA_INT) { - result = record.getNormalAltCount(); - } else if(record.getNVarCov() != TabDelimitedFileUtil.NA_INT) { - result = record.getNVarCov(); - } else if((record.getNormalDepth() != TabDelimitedFileUtil.NA_INT) && - (record.getNormalVaf() != TabDelimitedFileUtil.NA_INT)) { - result = Math.round(record.getNormalDepth() * record.getNormalVaf()); - } - - return result; - } - - public static Integer getNormalRefCount(MafRecord record) { - Integer result = null; - - if (record.getNormalRefCount() != TabDelimitedFileUtil.NA_INT) { - result = record.getNormalRefCount(); - } else if((record.getNVarCov() != TabDelimitedFileUtil.NA_INT) && - (record.getNTotCov() != TabDelimitedFileUtil.NA_INT)) { - result = record.getNTotCov()-record.getNVarCov(); - } else if((record.getNormalDepth() != TabDelimitedFileUtil.NA_INT) && - (record.getNormalVaf() != TabDelimitedFileUtil.NA_INT)) { - result = record.getNormalDepth() - Math.round(record.getNormalDepth() * record.getNormalVaf()); - } - - return result; - } - - /** - * Generates a new ExtendedMutation instance with default values. - * The mutation instance returned by this method will not have - * any field with a "null" value. - * - * @return a mutation instance initialized by default values - */ - public static ExtendedMutation newMutation() { - Integer defaultInt = TabDelimitedFileUtil.NA_INT; - String defaultStr = TabDelimitedFileUtil.NA_STRING; - //Long defaultLong = TabDelimitedFileUtil.NA_LONG; - Long defaultLong = -1L; - Float defaultFloat = TabDelimitedFileUtil.NA_FLOAT; - CanonicalGene defaultGene = new CanonicalGene("INVALID"); - - ExtendedMutation mutation = new ExtendedMutation(); - - mutation.setGeneticProfileId(defaultInt); - mutation.setSampleId(defaultInt); - mutation.setGene(defaultGene); - mutation.setSequencingCenter(defaultStr); - mutation.setSequencer(defaultStr); - mutation.setProteinChange(defaultStr); - mutation.setMutationType(defaultStr); - mutation.setChr(defaultStr); - mutation.setStartPosition(defaultLong); - mutation.setEndPosition(defaultLong); - mutation.setValidationStatus(defaultStr); - mutation.setMutationStatus(defaultStr); - mutation.setNcbiBuild(defaultStr); - mutation.setStrand(defaultStr); - mutation.setVariantType(defaultStr); - mutation.setAllele(defaultStr, defaultStr, defaultStr); - mutation.setDbSnpRs(defaultStr); - mutation.setDbSnpValStatus(defaultStr); - mutation.setMatchedNormSampleBarcode(defaultStr); - mutation.setMatchNormSeqAllele1(defaultStr); - mutation.setMatchNormSeqAllele2(defaultStr); - mutation.setTumorValidationAllele1(defaultStr); - mutation.setTumorValidationAllele2(defaultStr); - mutation.setMatchNormValidationAllele1(defaultStr); - mutation.setMatchNormValidationAllele2(defaultStr); - mutation.setVerificationStatus(defaultStr); - mutation.setSequencingPhase(defaultStr); - mutation.setSequenceSource(defaultStr); - mutation.setValidationMethod(defaultStr); - mutation.setScore(defaultStr); - mutation.setBamFile(defaultStr); - mutation.setTumorAltCount(defaultInt); - mutation.setTumorRefCount(defaultInt); - mutation.setNormalAltCount(defaultInt); - mutation.setNormalRefCount(defaultInt); - mutation.setCodonChange(defaultStr); - mutation.setRefseqMrnaId(defaultStr); - mutation.setUniprotAccession(defaultStr); - mutation.setProteinPosStart(defaultInt); - mutation.setProteinPosEnd(defaultInt); - mutation.setCanonicalTranscript(true); - - return mutation; - } - - private static Map annotateProteinChange(String proteinChange) { - int start = -1; - int end = -1; - Map annotation = new HashMap<>(); - annotation.put("start", start); - annotation.put("end", end); - - if (proteinChange == null) { - return annotation; - } - - if (proteinChange.startsWith("p.")) { - proteinChange = proteinChange.substring(2); - } - - if (proteinChange.indexOf("[") != -1) { - proteinChange = proteinChange.substring(0, proteinChange.indexOf("[")); - } - - proteinChange = proteinChange.trim(); - - Pattern p = Pattern.compile("^([A-Z\\*]+)([0-9]+)([A-Z\\*\\?]*)$"); - Matcher m = p.matcher(proteinChange); - if (m.matches()) { - String ref = m.group(1); - String var = m.group(3); - Integer refL = ref.length(); - - start = Integer.valueOf(m.group(2)); - - if (ref.equals(var)) { - end = start; - } else if (ref.equals("*")) { - end = start; - } else if (var.equals("*")) { - end = start; - } else if (start == 1) { - end = start; - } else if (var.equals("?")) { - end = start; - } else { - end = start + refL - 1; - } - } else { - p = Pattern.compile("[A-Z]?([0-9]+)(_[A-Z]?([0-9]+))?(delins|ins)([A-Z]+)"); - m = p.matcher(proteinChange); - if (m.matches()) { - start = Integer.valueOf(m.group(1)); - if (m.group(3) != null) { - end = Integer.valueOf(m.group(3)); - } else { - end = start; - } - } else { - p = Pattern.compile("[A-Z]?([0-9]+)(_[A-Z]?([0-9]+))?(_)?splice"); - m = p.matcher(proteinChange); - if (m.matches()) { - start = Integer.valueOf(m.group(1)); - if (m.group(3) != null) { - end = Integer.valueOf(m.group(3)); - } else { - end = start; - } - } else { - p = Pattern.compile("[A-Z]?([0-9]+)_[A-Z]?([0-9]+)(.+)"); - m = p.matcher(proteinChange); - if (m.matches()) { - start = Integer.valueOf(m.group(1)); - end = Integer.valueOf(m.group(2)); - } else { - // Check for frameshift variant - p = Pattern.compile("([A-Z\\*])([0-9]+)[A-Z]?fs.*"); - m = p.matcher(proteinChange); - if (m.matches()) { - start = Integer.valueOf(m.group(2)); - end = start; - } else { - // Check for inframe insertion, deletion or duplication - p = Pattern.compile("([A-Z]+)?([0-9]+)((ins)|(del)|(dup))"); - m = p.matcher(proteinChange); - if (m.matches()) { - start = Integer.valueOf(m.group(2)); - end = start; - } - } - } - } - } - } - - annotation.put("start", start); - annotation.put("end", end); - return annotation; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/FileUploadFilter.java b/core/src/main/java/org/mskcc/cbio/portal/util/FileUploadFilter.java deleted file mode 100644 index 9aa54c5d2ad..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/FileUploadFilter.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.IOException; -import javax.servlet.*; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletRequestWrapper; - -/** -* Filter that wraps an underlying file upload request. -* -*

    This filter should be configured only for those operations that use a -* file upload request. -*/ -public final class FileUploadFilter implements Filter { - - public void init(FilterConfig aConfig) throws ServletException { - //do nothing - } - - public void destroy() { - //do nothing - } - - public void doFilter( - ServletRequest aRequest, ServletResponse aResponse, FilterChain aChain - ) throws IOException, ServletException { - HttpServletRequest request = (HttpServletRequest) aRequest; - if ( isFileUploadRequest(request) ) { - FileUploadRequestWrapper wrapper = new FileUploadRequestWrapper(request); - aChain.doFilter(wrapper, aResponse); - } - else { - aChain.doFilter(aRequest, aResponse); - } - } - - private boolean isFileUploadRequest(HttpServletRequest aRequest){ - return - aRequest.getMethod().equalsIgnoreCase("POST") && - aRequest.getContentType().startsWith("multipart/form-data") - ; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/FileUploadRequestWrapper.java b/core/src/main/java/org/mskcc/cbio/portal/util/FileUploadRequestWrapper.java deleted file mode 100644 index 839f6057e8c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/FileUploadRequestWrapper.java +++ /dev/null @@ -1,190 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.IOException; -import java.util.*; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletRequestWrapper; -import org.apache.commons.fileupload.FileItem; -import org.apache.commons.fileupload.FileUploadException; -import org.apache.commons.fileupload.disk.DiskFileItemFactory; -import org.apache.commons.fileupload.servlet.ServletFileUpload; - -/** -* Wrapper for a file upload request. -* -*

    This class uses the Apache Commons -* File Upload tool. -* The generous Apache License will very likely allow you to use it in your -* applications as well. -*/ -public class FileUploadRequestWrapper extends HttpServletRequestWrapper { - - /** Constructor. */ - public FileUploadRequestWrapper(HttpServletRequest aRequest) throws IOException { - super(aRequest); - ServletFileUpload upload = new ServletFileUpload( new DiskFileItemFactory()); - try { - List fileItems = upload.parseRequest(aRequest); - convertToMaps(fileItems); - } - catch(FileUploadException ex){ - throw new IOException("Cannot parse underlying request: " + ex.toString()); - } - } - - /** - * Return all request parameter names, for both regular controls and file upload - * controls. - */ - @Override public Enumeration getParameterNames() { - Set allNames = new LinkedHashSet(); - allNames.addAll(fRegularParams.keySet()); - allNames.addAll(fFileParams.keySet()); - return Collections.enumeration(allNames); - } - - /** - * Return the parameter value. Applies only to regular parameters, not to - * file upload parameters. - * - *

    If the parameter is not present in the underlying request, - * then null is returned. - *

    If the parameter is present, but has no associated value, - * then an empty string is returned. - *

    If the parameter is multivalued, return the first value that - * appears in the request. - */ - @Override public String getParameter(String aName) { - String result = null; - List values = fRegularParams.get(aName); - if( values == null ){ - //you might try the wrappee, to see if it has a value - } - else if ( values.isEmpty() ) { - //param name known, but no values present - result = ""; - } - else { - //return first value in list - result = values.get(FIRST_VALUE); - } - return result; - } - - /** - * Return the parameter values. Applies only to regular parameters, - * not to file upload parameters. - */ - @Override public String[] getParameterValues(String aName) { - String[] result = null; - List values = fRegularParams.get(aName); - if( values != null ) { - result = values.toArray(new String[values.size()]); - } - return result; - } - - /** - * Return a {@code Map} for all regular parameters. - * Does not return any file upload paramters at all. - */ - @Override public Map getParameterMap() { - return Collections.unmodifiableMap(fRegularParams); - } - - /** - * Return a {@code List}, in the same order as they appear - * in the underlying request. - */ - public List getFileItems(){ - return new ArrayList(fFileParams.values()); - } - - /** - * Return the {@link FileItem} of the given name. - *

    If the name is unknown, then return null. - */ - public FileItem getFileItem(String aFieldName){ - return fFileParams.get(aFieldName); - } - - - // PRIVATE // - - /** Store regular params only. May be multivalued (hence the List). */ - private final Map> fRegularParams = - new LinkedHashMap>() - ; - /** Store file params only. */ - private final Map fFileParams = - new LinkedHashMap() - ; - private static final int FIRST_VALUE = 0; - - private void convertToMaps(List aFileItems){ - for(FileItem item: aFileItems) { - if ( isFileUploadField(item) ) { - fFileParams.put(item.getFieldName(), item); - } - else { - if( alreadyHasValue(item) ){ - addMultivaluedItem(item); - } - else { - addSingleValueItem(item); - } - } - } - } - - private boolean isFileUploadField(FileItem aFileItem){ - return ! aFileItem.isFormField(); - } - - private boolean alreadyHasValue(FileItem aItem){ - return fRegularParams.get(aItem.getFieldName()) != null; - } - - private void addSingleValueItem(FileItem aItem){ - List list = new ArrayList(); - list.add(aItem.getString()); - fRegularParams.put(aItem.getFieldName(), list); - } - - private void addMultivaluedItem(FileItem aItem){ - List values = fRegularParams.get(aItem.getFieldName()); - values.add(aItem.getString()); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/FileUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/FileUtil.java deleted file mode 100644 index 744ca56545a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/FileUtil.java +++ /dev/null @@ -1,108 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; - -/** - * Misc File Utilities. - * - * @author Ethan Cerami. - */ -public class FileUtil { - /** - * BioPAX File Type. - */ - public static final int BIOPAX = 0; - - /** - * PSI_MI File Type. - */ - public static final int PSI_MI = 1; - - /** - * External DBs File Type. - */ - public static final int EXTERNAL_DBS = 2; - - /** - * Identifiers File Type. - */ - public static final int IDENTIFIERS = 3; - - /** - * Unknown File Type. - */ - public static final int UNKNOWN = 4; - - /** - * Gets Number of Lines in Specified File. - * - * @param file File. - * @return number of lines. - * @throws java.io.IOException Error Reading File. - */ - public static int getNumLines(File file) throws IOException { - int numLines = 0; - FileReader reader = new FileReader(file); - BufferedReader buffered = new BufferedReader(reader); - String line = buffered.readLine(); - while (line != null) { - if (!line.startsWith("#") && line.trim().length() > 0) { - numLines++; - } - line = buffered.readLine(); - } - reader.close(); - return numLines; - } - - /** - * Gets Next Line of Input. Filters out Empty Lines and Comments. - * - * @param buf BufferedReader Object. - * @return next line of input. - * @throws IOException Error reading input stream. - */ - public static String getNextLine(BufferedReader buf) throws IOException { - String line = buf.readLine(); - while (line != null && (line.trim().length() == 0 - || line.trim().startsWith("#"))) { - line = buf.readLine(); - } - return line; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GeneComparator.java b/core/src/main/java/org/mskcc/cbio/portal/util/GeneComparator.java deleted file mode 100644 index f26d0cef438..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GeneComparator.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -// imports -import java.util.Comparator; -import org.mskcc.cbio.portal.model.Gene; - -/** - * Compares two genes for equivalency (ref and standard symbol). - */ -public class GeneComparator implements Comparator { - - public int compare(Object object0, Object object1) { - if (object0 != null && object1 != null) { - Gene gene0 = (Gene) object0; - Gene gene1 = (Gene) object1; - String name0 = gene0.getStandardSymbol(); - String name1 = gene1.getStandardSymbol(); - if (name0 != null && name1 != null) { - return name0.compareTo(name1); - } - } - return -1; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GenePanelUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/GenePanelUtil.java deleted file mode 100644 index 046c20083b0..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GenePanelUtil.java +++ /dev/null @@ -1,145 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; - -import java.util.*; -import java.util.stream.Collectors; - -/** - * Utilities for operations on sets and importing/updating gene panels. - * - * @author jtquach1 - */ -public class GenePanelUtil { - - /** - * Extracts a property value from a given propertyName in properties. - * extractGenes is used instead for the propertyName "gene_list". - * - * @param propertyName May be "stable_id" or "description". - * @param properties - * @param noSpaceAllowed noSpaceAllowed=false may be used for propertyName="description". - * @return A String representing the propertyValue following the propertyName. - * @throws IllegalArgumentException - */ - public static String extractPropertyValue(String propertyName, Properties properties, boolean noSpaceAllowed) throws IllegalArgumentException { - String propertyValue = properties.getProperty(propertyName); - - if (propertyValue == null) { - throw new NullPointerException(propertyName + " does not exist in properties."); - } - - String propertyValueTrimmed = propertyValue.trim(); - if (propertyValueTrimmed.isEmpty()) { - throw new IllegalArgumentException(propertyName + " is not specified."); - } - - if (noSpaceAllowed && propertyValueTrimmed.contains(" ")) { - throw new IllegalArgumentException(propertyName + " cannot contain spaces: " + propertyValueTrimmed); - } - - return propertyValueTrimmed; - } - - /** - * Extracts genes from the tab-delimited list after the "gene_list" parameter. - * If updating, set allowEmptyGenePanel=true. - * - * @param properties - * @param allowEmptyGenePanel - * @return If a gene cannot be found, don't return any of the genes. - */ - public static Set extractGenes(Properties properties, Boolean allowEmptyGenePanel) { - String propertyValue = properties.getProperty("gene_list").trim(); - if (propertyValue.length() == 0) { - if (allowEmptyGenePanel) { - return new HashSet<>(); - } - throw new IllegalArgumentException("gene_list is not specified."); - } - - String[] genes = propertyValue.split("\t"); - Set canonicalGenes = new HashSet<>(); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - //Check if genes are duplicated and report them - for (int i = 0; i < genes.length; i++) { - for (int j = i + 1 ; j < genes.length; j++) { - if (genes[i].equals(genes[j])) { - ProgressMonitor.logWarning("The following gene is duplicated: "+genes[i]); - } - } - } - - for (String panelGene : genes) { - try { - long geneId = Long.parseLong(panelGene); - CanonicalGene canonicalGene = daoGeneOptimized.getGene(geneId); - - if (canonicalGene != null) { - canonicalGenes.add(canonicalGene); - } else { - ProgressMonitor.logWarning("Could not find gene in the database: " + geneId); - } - } catch (NumberFormatException e) { - List canonicalGenesList = daoGeneOptimized.getGene(panelGene, true); - - if (canonicalGenesList != null && !canonicalGenesList.isEmpty()) { - // we do not want multiple genes added to the gene panel object - // for a single gene symbol found in the data file - canonicalGenes.add(canonicalGenesList.get(0)); - } else { - ProgressMonitor.logWarning("Could not find gene in the database: " + panelGene); - } - } - } - - return (canonicalGenes.size() == genes.length) ? canonicalGenes : null; - } - - /** - * Gets a Pair representing the gene sets to add and to remove from a gene panel - * in the database, since MySQL throws an error when trying to add duplicate genes. - * add represents genes from incoming that original does not have. - * remove represents genes from original that incoming does not have. - * - * @param incoming New genes to replace original - * @param original Old genes currently in the database - * @return Pair represents the unique genes from the incoming and original gene panels. - */ - public static Pair getAddRemove(Set incoming, Set original) { - Set add = incoming.stream() - .filter(e -> !original.contains(e)) - .collect(Collectors.toSet()); - Set remove = original.stream() - .filter(e -> !incoming.contains(e)) - .collect(Collectors.toSet()); - - return new Pair(add, remove); - } - - public static final class Pair { - public final Set add, remove; - - public Pair(Set add, Set remove) { - this.add = add; - this.remove = remove; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (o == null || getClass() != o.getClass()) return false; - Pair pair = (Pair) o; - return Objects.equals(add, pair.add) && - Objects.equals(remove, pair.remove); - } - - @Override - public int hashCode() { - return Objects.hash(add, remove); - } - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GenePrefsParser.java b/core/src/main/java/org/mskcc/cbio/portal/util/GenePrefsParser.java deleted file mode 100644 index 863445d8795..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GenePrefsParser.java +++ /dev/null @@ -1,125 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.GeneCounterPrefs; - -import java.util.HashMap; - -//TODO: I think this can be deleted, as it is replaced by OncoSpec language parser - -/** - * parse a list of genes with 'microencodings' as submitted in the Portal Web form. - * A microencoding has the form: - * geneSymbol:CE - * where :CE are optional and C and E, denoting copy number and Expression, respectively, are members of { -, +, ! }, meaning, - * respectively, set down, set up, and 'ignore'. - * - * @author Ethan Cerami - */ -public class GenePrefsParser { - - public static HashMap getGenePrefs (String userGeneListStr) { - HashMap geneCounterPrefMap = new HashMap(); - - String genes[] = userGeneListStr.trim().split("\\s+"); - for (String gene : genes) { - geneCounterPrefMap.put( parseGeneSymbol(gene), parseGeneWithMicroEncoding( gene ) ); - } - return geneCounterPrefMap; - } - - public static String parseGeneSymbol( String geneWithMicroEncoding ){ - - validateGeneWithMicroEncoding( geneWithMicroEncoding ); - if (geneWithMicroEncoding.contains(":")) { - String parts[] = geneWithMicroEncoding.split(":"); - return parts[0]; - } else { - return geneWithMicroEncoding; - } - } - - private static void validateGeneWithMicroEncoding( String geneWithMicroEncoding ){ - - if (geneWithMicroEncoding.contains(":")) { - String parts[] = geneWithMicroEncoding.split(":"); - if (parts.length != 2) { - throw new IllegalArgumentException ("Illegal String: " + geneWithMicroEncoding); - } - - String prefsString = parts[1]; - if (prefsString.length() != 2) { - throw new IllegalArgumentException ("Illegal String: " + geneWithMicroEncoding); - } - } - } - - public static GeneCounterPrefs parseGeneWithMicroEncoding( String gene ){ - GeneCounterPrefs prefs = new GeneCounterPrefs(); - prefs.setIgnoreCna(false); - prefs.setIgnoreMrna(false); - - validateGeneWithMicroEncoding( gene ); - - if (gene.contains(":")) { - String parts[] = gene.split(":"); - - String prefsString = parts[1]; - - char cnaPref = prefsString.charAt(0); - if (cnaPref == '-') { - prefs.setCnaDown(true); - } - if (cnaPref == '+') { - prefs.setCnaUp(true); - } - if (cnaPref == '!') { - prefs.setIgnoreCna(true); - } - char mrnaPref = prefsString.charAt(1); - if (mrnaPref == '-') { - prefs.setMrnaDown(true); - } - if (mrnaPref == '+') { - prefs.setMrnaUp(true); - } - if (mrnaPref == '!') { - prefs.setIgnoreMrna(true); - } - - } - return prefs; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GeneSetReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/GeneSetReader.java deleted file mode 100644 index ce5ed452785..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GeneSetReader.java +++ /dev/null @@ -1,82 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.SetOfGenes; - -import java.io.InputStreamReader; -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStream; -import java.util.ArrayList; - -/** - * Reads in Gene Sets from an InputStream. - * - * @author Ethan Cerami. - */ -public class GeneSetReader { - - /** - * Constructor. - * - * @param in InputStream Object. - * @return ArrayList of GeneSet Objects. - * @throws IOException IO Error. - */ - public static ArrayList readGeneSets (InputStream in) throws IOException { - ArrayList geneSetList = new ArrayList(); - - // User-Defined Gene Set Goes First - SetOfGenes g0 = new SetOfGenes(); - g0.setName("User-defined List"); - g0.setGeneList(""); - geneSetList.add(g0); - - BufferedReader bufReader = new BufferedReader(new InputStreamReader(in)); - String line = bufReader.readLine(); - while (line != null) { - line = line.trim(); - String parts[] = line.split("="); - g0 = new SetOfGenes(); - String genes[] = parts[1].split("\\s"); - - // Store number of genes in the gene name - g0.setName(parts[0] + " (" + genes.length + " genes)"); - g0.setGeneList(parts[1]); - geneSetList.add(g0); - line = bufReader.readLine(); - } - return geneSetList; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GeneSetUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/GeneSetUtil.java deleted file mode 100644 index 59ed1d2b204..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GeneSetUtil.java +++ /dev/null @@ -1,82 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.SetOfGenes; - -import java.io.IOException; -import java.io.InputStream; -import java.util.ArrayList; - -/** - * Singleton to store arbitrary gene sets, to be displayed to the user. - *

    - * This will (eventually) be replaced with live gene sets from Broad MSigDB and Pathway Commons. - * - * @author Ethan Cerami - */ -public class GeneSetUtil { - private ArrayList geneSetList = new ArrayList(); - private static GeneSetUtil geneSetUtil; - - /** - * Gets Global Singleton. - * @return GeneSetUtil. - * @throws IOException IO Error. - */ - public static GeneSetUtil getInstance() throws IOException { - if (geneSetUtil == null) { - geneSetUtil = new GeneSetUtil(); - } - return geneSetUtil; - } - - /** - * Private Constructor. - * @throws IOException IO Error. - */ - private GeneSetUtil() throws IOException { - InputStream in = this.getClass().getResourceAsStream("/gene_sets.txt"); - geneSetList = GeneSetReader.readGeneSets(in); - in.close(); - } - - /** - * Gets all Gene Sets. - * - * @return ArrayList of GeneSet Objects. - */ - public ArrayList getGeneSetList() { - return geneSetList; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GeneticProfileReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/GeneticProfileReader.java deleted file mode 100644 index af686a7234e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GeneticProfileReader.java +++ /dev/null @@ -1,362 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.File; -import java.io.FileInputStream; -import java.io.IOException; -import java.util.Arrays; -import java.util.HashSet; -import java.util.Properties; -import java.util.Set; - -import java.util.stream.Collectors; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.GeneticProfileLink; -import org.mskcc.cbio.portal.scripts.TrimmedProperties; - -/** - * Prepare a GeneticProfile for having its data loaded. - * - * @author Ethan Cerami - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -public class GeneticProfileReader { - - /** - * Load a GeneticProfile. Get a stableID from a description file. If the same - * GeneticProfile already exists in the dbms use it, otherwise create a new - * GeneticProfile dbms record, defining all parameters from the file. - * - * @author Ethan Cerami - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * - * @param file - * A handle to a description of the genetic profile, i.e., a - * 'description' or 'meta' file. - * @return an instantiated GeneticProfile record - * @throws IOException - * if the description file cannot be read - * @throws DaoException - */ - public static GeneticProfile loadGeneticProfile(File file) throws IOException, DaoException { - GeneticProfile geneticProfile = loadGeneticProfileFromMeta(file); - GeneticProfile existingGeneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(geneticProfile.getStableId()); - if (existingGeneticProfile != null) { - if (!existingGeneticProfile.getDatatype().equals("MAF")) { - // the dbms already contains a GeneticProfile with the file's stable_id. This scenario is not supported - // anymore, so throw error telling user to remove existing profile first: - throw new RuntimeException("Error: genetic_profile record found with same Stable ID as the one used in your data: " - + existingGeneticProfile.getStableId() + ". Remove the existing genetic_profile record first."); - } else { - // For mutation data only we can have multiple files with the same genetic_profile. - // There is a constraint in the mutation database table to prevent duplicated data - // If this constraint is hit (mistakenly importing the same maf twice) MySqlBulkLoader will throw an exception - // - // make an object combining the pre-existing profile with the file-specific properties of the current file - GeneticProfile gp = new GeneticProfile(existingGeneticProfile); - gp.setTargetLine(gp.getTargetLine()); - gp.setOtherMetadataFields(gp.getAllOtherMetadataFields()); - return gp; - } - } - - // For GSVA profiles, we want to create a geneticProfileLink from source_stable_id for: - // - expression zscores -> expression - // - gsva scores -> expression - // - gsva pvalues -> gsva scores - // Currently we only create geneticProfileLink for expression zscores when it's available. - // This geneticProfileLink is required for the oncoprint in a GSVA study. In the future it might - // be useful to make this a requirement for every expression zscore file. - GeneticProfileLink geneticProfileLink = null; - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.GENESET_SCORE || - (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MRNA_EXPRESSION && - geneticProfile.getDatatype().equals("Z-SCORE") && - geneticProfile.getAllOtherMetadataFields().getProperty("source_stable_id") != null)) { - geneticProfileLink = createGeneticProfileLink(geneticProfile); - } - - // For GSVA profiles, we want to check that the version in the meta file is - // the same as the version of the gene sets in the database (genesets_info table). - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.GENESET_SCORE) { - validateGenesetProfile(geneticProfile, file); - } - - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.GENERIC_ASSAY) { - validateGenericAssay(geneticProfile, file); - geneticProfile.setGenericAssayType(geneticProfile.getOtherMetaDataField("generic_assay_type")); - // if genericAssayType is TREATMENT_RESPONSE, validate if pivotThreshold and sortOrder exist - if (geneticProfile.getGenericAssayType().equals("TREATMENT_RESPONSE")) { - validateTreatmentResponse(geneticProfile, file); - } - // add pivotThreshold and sortOrder if exist - if (geneticProfile.getOtherMetaDataField("pivot_threshold_value") != null) { - geneticProfile.setPivotThreshold(Float.parseFloat(geneticProfile.getOtherMetaDataField("pivot_threshold_value"))); - } - if (geneticProfile.getOtherMetaDataField("value_sort_order") != null) { - geneticProfile.setSortOrder(geneticProfile.getOtherMetaDataField("value_sort_order")); - } - } - - // add new genetic profile - DaoGeneticProfile.addGeneticProfile(geneticProfile); - - // add genetic profile link if set - if (geneticProfileLink != null) { - // Set `REFERRING_GENETIC_PROFILE_ID` - int geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId(geneticProfile.getStableId()).getGeneticProfileId(); - geneticProfileLink.setReferringGeneticProfileId(geneticProfileId); - DaoGeneticProfileLink.addGeneticProfileLink(geneticProfileLink); - } - - // Get ID - GeneticProfile gp = DaoGeneticProfile.getGeneticProfileByStableId(geneticProfile.getStableId()); - geneticProfile.setGeneticProfileId(gp.getGeneticProfileId()); - return geneticProfile; - } - - private static GeneticProfileLink createGeneticProfileLink(GeneticProfile geneticProfile) { - GeneticProfileLink geneticProfileLink = new GeneticProfileLink(); - - // Set `REFERRED_GENETIC_PROFILE_ID` - String referredGeneticProfileStableId = parseStableId(geneticProfile.getAllOtherMetadataFields(), "source_stable_id"); - if (referredGeneticProfileStableId == null) { - throw new RuntimeException("'source_stable_id' is required in meta file for " + geneticProfile.getStableId()); - } - GeneticProfile referredGeneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(referredGeneticProfileStableId); - geneticProfileLink.setReferredGeneticProfileId(referredGeneticProfile.getGeneticProfileId()); - - // Decide reference type - // In the future with other types of genetic profile links, this should be configurable in the meta file. - String referenceType; - if (Arrays.asList("P-VALUE", "Z-SCORE").contains(geneticProfile.getDatatype())) { - referenceType = "STATISTIC"; - } else if (geneticProfile.getDatatype().equals("GSVA-SCORE")) { - referenceType = "AGGREGATION"; - } else { - // not expected but might be useful for future genetic profile links - throw new RuntimeException("Unknown datatype '" + geneticProfile.getDatatype() + "' in meta file for " + geneticProfile.getStableId()); - } - // Set `REFERENCE_TYPE` - geneticProfileLink.setReferenceType(referenceType); - - return geneticProfileLink; - } - - private static void validateGenesetProfile(GeneticProfile geneticProfile, File file) throws DaoException { - String genesetVersion = DaoInfo.getGenesetVersion(); - - // TODO Auto-generated method stub - - // Check if version is present in database - if (genesetVersion == null) { - throw new RuntimeException("Attempted to import GENESET_SCORE data, but all gene set tables are empty.\n" - + "Please load gene sets with ImportGenesetData.pl first. See:\n" - + "https://github.com/cBioPortal/cbioportal/blob/master/docs/Import-Gene-Sets.md\n"); - - // Check if version is present in meta file - } else if (geneticProfile.getOtherMetaDataField("geneset_def_version") == null) { - throw new RuntimeException("Missing geneset_def_version property in '" + file.getPath() + "'. This version must be " - + "the same as the gene set version loaded with ImportGenesetData.pl ."); - - // Check if version is same as database version - } else if (!geneticProfile.getOtherMetaDataField("geneset_def_version").equals(genesetVersion)) { - throw new RuntimeException("'geneset_def_version' property (" + geneticProfile.getOtherMetaDataField("geneset_def_version") + - ") in '" + file.getPath() + "' differs from database version (" + genesetVersion + ")."); - } - - // Prevent p-value profile to show up as selectable genomic profile - if (geneticProfile.getDatatype().equals("P-VALUE")) { - geneticProfile.setShowProfileInAnalysisTab(false); - } - } - - /** - * Check whether required columns for assay response data were defined in the meta file - */ - private static void validateTreatmentResponse(GeneticProfile geneticProfile, File file) { - if (geneticProfile.getOtherMetaDataField("pivot_threshold_value") == null) - throw new RuntimeException("Missing `pivot_threshold_value` property in '" + file.getPath() + "' meta data file."); - - if (geneticProfile.getOtherMetaDataField("value_sort_order") == null) - throw new RuntimeException("Missing `value_sort_order` property in '" + file.getPath() + "' meta data file."); - } - - /** - * Check whether required columns for assay response data were defined in the meta file - */ - private static void validateGenericAssay(GeneticProfile geneticProfile, File file) { - if (geneticProfile.getOtherMetaDataField("generic_assay_type") == null) - throw new RuntimeException("Missing `generic_assay_type` property in '" + file.getPath() + "' meta data file."); - } - - /** - * Load a GeneticProfile from a description file. - * - * @author Ethan Cerami - * @author Arthur Goldberg goldberg@cbio.mskcc.org - * - * @param file - * A handle to a description of the genetic profile, i.e., a - * 'description' or 'meta' file. - * @return an instantiated GeneticProfile - * @throws IOException - * if the description file cannot be read - * @throws DaoException - */ - public static GeneticProfile loadGeneticProfileFromMeta(File file) throws IOException, DaoException { - Properties properties = new TrimmedProperties(); - properties.load(new FileInputStream(file)); - // when loading cancer studies and their profiles from separate files, - // use the cancer_study_identifier as a unique id for each study. - // this was called the "cancer_type_id" previously. - // eventually, it won't be needed when studies are loaded by a connected client that - // knows its study_id in its state - String cancerStudyIdentifier = properties.getProperty("cancer_study_identifier"); - if (cancerStudyIdentifier == null) { - throw new IllegalArgumentException("cancer_study_identifier is not specified."); - } - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyIdentifier); - if (cancerStudy == null) { - throw new IllegalArgumentException("cancer study identified by cancer_study_identifier " + cancerStudyIdentifier + " not found in dbms."); - } - String stableId = parseStableId(properties, "stable_id"); - String profileName = properties.getProperty("profile_name"); - String profileDescription = properties.getProperty("profile_description"); - String geneticAlterationTypeString = properties.getProperty("genetic_alteration_type"); - String datatype = properties.getProperty("datatype"); - if (profileName == null) { - profileName = geneticAlterationTypeString; - } - if (profileDescription == null) { - profileDescription = geneticAlterationTypeString; - } - if (geneticAlterationTypeString == null) { - throw new IllegalArgumentException("genetic_alteration_type is not specified."); - } else if (datatype == null) { - datatype = ""; - } - boolean showProfileInAnalysisTab = true; - String showProfileInAnalysisTabStr = properties.getProperty("show_profile_in_analysis_tab"); - if (showProfileInAnalysisTabStr != null && showProfileInAnalysisTabStr.equalsIgnoreCase("FALSE")) { - showProfileInAnalysisTab = false; - } - String patientLevelStr = properties.getProperty("patient_level"); - boolean patientLevel = patientLevelStr != null && patientLevelStr.equalsIgnoreCase("TRUE"); - - profileDescription = profileDescription.replaceAll("\t", " "); - GeneticAlterationType alterationType = GeneticAlterationType.valueOf(geneticAlterationTypeString); - GeneticProfile geneticProfile = new GeneticProfile(); - geneticProfile.setCancerStudyId(cancerStudy.getInternalId()); - geneticProfile.setStableId(stableId); - geneticProfile.setProfileName(profileName); - geneticProfile.setProfileDescription(profileDescription); - geneticProfile.setGeneticAlterationType(alterationType); - geneticProfile.setDatatype(datatype); - geneticProfile.setShowProfileInAnalysisTab(showProfileInAnalysisTab); - geneticProfile.setTargetLine(properties.getProperty("target_line")); - geneticProfile.setOtherMetadataFields(properties); - geneticProfile.setPatientLevel(patientLevel); - return geneticProfile; - } - - private static String parseStableId(Properties properties, String stableIdPropName) { - String stableId = properties.getProperty(stableIdPropName); - if (stableId == null) { - throw new IllegalArgumentException("stable_id is not specified."); - } - String cancerStudyIdentifier = properties.getProperty("cancer_study_identifier"); - //automatically add the cancerStudyIdentifier in front of stableId (since the rest of the - //code still relies on this - TODO: this can be removed once the rest of the backend and frontend code - //stop assuming cancerStudyIdentifier to be part of stableId): - if (!stableId.startsWith(cancerStudyIdentifier + "_")) { - stableId = cancerStudyIdentifier + "_" + stableId; - } - return stableId; - } - - public static String loadGenePanelInformation(File file) throws Exception { - Properties properties = new TrimmedProperties(); - properties.load(new FileInputStream(file)); - return properties.getProperty("gene_panel"); - } - - /** - * Gets the information of "variant_classification_filter" in the file, if it exists. Otherwise, it - * returns null. "variant_classification_filter" can be used in the mutation meta file to specify - * which types of mutations want to be filtered. - * - * @param file - * @return a string with the types of mutations that should be filtered, comma-separated. - * @throws Exception - */ - public static Set getVariantClassificationFilter(File file) throws Exception { - Properties properties = new TrimmedProperties(); - properties.load(new FileInputStream(file)); - String variantClassificationFilter = properties.getProperty("variant_classification_filter"); - if (variantClassificationFilter != null) { - Set filteredMutations = new HashSet(); - for (String mutation : (Arrays.asList(variantClassificationFilter.split(",")))) { - mutation = mutation.trim(); - filteredMutations.add(mutation); - } - return filteredMutations; - } else { - return null; - } - } - - /** - * Returns a set of namespaces if present in the maf metafile. - * The defined namespaces will be used to construct a JSON doc - * containing namespace => { key,value pairs } to import into - * the `mutation` database as a sample-level variant annotation. - * @param file - * @return - * @throws Exception - */ - public static Set getNamespaces(File file) throws Exception { - Properties properties = new TrimmedProperties(); - properties.load(new FileInputStream(file)); - String value = properties.getProperty("namespaces"); - return value != null ? - Arrays.stream(value.split(",")) - .map(String::trim) - .collect(Collectors.toSet()) - : - null; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GeneticProfileUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/GeneticProfileUtil.java deleted file mode 100644 index 16ab5098eba..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GeneticProfileUtil.java +++ /dev/null @@ -1,101 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.dao.DaoGenePanel; - -import java.util.*; - -/** - * Genetic Profile Util Class. - * - */ -public class GeneticProfileUtil { - - /** - * Gets the GeneticProfile with the Specified GeneticProfile ID. - * @param profileId GeneticProfile ID. - * @param profileList List of Genetic Profiles. - * @return GeneticProfile or null. - */ - public static GeneticProfile getProfile(String profileId, - ArrayList profileList) { - for (GeneticProfile profile : profileList) { - if (profile.getStableId().equals(profileId)) { - return profile; - } - } - return null; - } - - /** - * Returns true if Any of the Profiles Selected by the User Refer to mRNA Expression - * outlier profiles. - * - * @param geneticProfileIdSet Set of Chosen Profiles IDs. - * @param profileList List of Genetic Profiles. - * @return true or false. - */ - public static boolean outlierExpressionSelected(HashSet geneticProfileIdSet, - ArrayList profileList) { - Iterator geneticProfileIdIterator = geneticProfileIdSet.iterator(); - while (geneticProfileIdIterator.hasNext()) { - String geneticProfileId = geneticProfileIdIterator.next(); - GeneticProfile geneticProfile = getProfile (geneticProfileId, profileList); - if (geneticProfile != null && geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MRNA_EXPRESSION) { - String profileName = geneticProfile.getProfileName(); - if (profileName != null) { - if (profileName.toLowerCase().contains("outlier")) { - return true; - } - } - } - } - return false; - } - - public static int getGenePanelId(String panelId) { - GenePanel genePanel = DaoGenePanel.getGenePanelByStableId(panelId); - return genePanel.getInternalId(); - } - - public static boolean geneInPanel(CanonicalGene gene, GenePanel genePanel) { - for (CanonicalGene panelGene : genePanel.getGenes()) { - if (panelGene.getEntrezGeneId() == gene.getEntrezGeneId()) { - return true; - } - } - return false; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GisticReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/GisticReader.java deleted file mode 100644 index fe0602aa0f4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GisticReader.java +++ /dev/null @@ -1,219 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Gistic; -import org.mskcc.cbio.portal.scripts.ValidationUtils; - -import java.io.*; -import java.util.ArrayList; - -/** - * Utility for importing Gistic data from a file - */ -public class GisticReader { - - - public ArrayList parse(File gistic_f, int cancerStudyId) throws IOException, DaoException { - - ArrayList gistics = new ArrayList(); - - FileReader reader = new FileReader(gistic_f); - BufferedReader buf = new BufferedReader(reader); - try { - String line = buf.readLine(); - - // -- parse field names -- - // todo: would it be better to use ? - - int chromosomeField = -1; - int peakStartField = -1; - int peakEndField = -1; - int genesField = -1; - int qvalField = -1; - int ampField = -1; - int cytobandField = -1; - - String[] fields = line.split("\t"); - int num_fields = fields.length; - - for (int i = 0 ; i < num_fields; i+=1) { - if (fields[i].equals("chromosome")) { - chromosomeField = i; - } - - else if (fields[i].equals("peak_start")) { - peakStartField = i; - } - - else if (fields[i].equals("peak_end")) { - peakEndField = i; - } - - else if (fields[i].equals("genes_in_region")) { - genesField = i; - } - - else if (fields[i].equals("q_value")) { - qvalField = i; - } - - else if (fields[i].equals("cytoband")) { - cytobandField = i; - } - - else if (fields[i].equals("amp")) { - ampField = i; - } - } - - if (chromosomeField == -1) { - throw new IllegalStateException("The field: chromosome, is missing"); - } - - if (peakStartField == -1) { - throw new IllegalStateException("The field: peak start, is missing"); - } - - if (peakEndField == -1) { - throw new IllegalStateException("The field: peak end, is missing"); - } - - if (genesField == -1) { - throw new IllegalStateException("The field: genes, is missing"); - } - - if (qvalField == -1) { - throw new IllegalStateException("The field: q_value, is missing"); - } - - if (cytobandField == -1) { - throw new IllegalStateException("The field: cytoband, is missing"); - } - - if (ampField == -1) { - throw new IllegalStateException("The field: amp, is missing"); - } - - line = buf.readLine(); - while (line != null) { - Gistic gistic; - try { - gistic = this.parseLine(line, cancerStudyId, chromosomeField, peakStartField, peakEndField, genesField, qvalField, ampField, cytobandField); - if (gistic != null) { - gistics.add(gistic); - } - } catch(Exception e) { - e.printStackTrace(); - throw e; - } - line = buf.readLine(); - } - - buf.close(); - reader.close(); - return gistics; - } - finally { - buf.close(); - } - } - - private Gistic parseLine(String line, int cancerStudyId, int chromosomeField, int peakStartField, int peakEndField, int genesField, int qvalField, int ampField, int cytobandField) { - String[] fields = line.split("\t"); - - Gistic gistic = new Gistic(); - gistic.setCancerStudyId(cancerStudyId); - - int chromosomeNumber = ValidationUtils.validateChromosome(fields[chromosomeField]); - gistic.setChromosome(chromosomeNumber); - - gistic.setPeakStart(Integer.parseInt(fields[peakStartField])); - gistic.setPeakEnd(Integer.parseInt(fields[peakEndField])); - - int amp = Integer.parseInt(fields[ampField]); - gistic.setAmp(amp == 1); - - gistic.setCytoband(fields[cytobandField]); - gistic.setqValue((Float.parseFloat(fields[qvalField]))); - - // -- parse genes -- - - // parse out '[' and ']' chars and ** Do these brackets have meaning? ** - String[] _genes = fields[genesField].replace("[","") - .replace("]", "") - .split(","); - - // map _genes to list of CanonicalGenes - ArrayList genes = new ArrayList(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - ArrayList alreadyProcessedGenes = new ArrayList(); - for (String gene : _genes) { - - gene = gene.split("\\|")[0]; - - CanonicalGene canonicalGene = daoGene.getNonAmbiguousGene(gene); - if (alreadyProcessedGenes.contains(canonicalGene)) { - String geneSymbolMessage = ""; - if (!gene.equalsIgnoreCase(canonicalGene.getHugoGeneSymbolAllCaps())) - geneSymbolMessage = "(given as alias in your file as: " + gene + ") "; - ProgressMonitor.logWarning("Gene " + canonicalGene.getHugoGeneSymbolAllCaps() + " (" + canonicalGene.getEntrezGeneId() + ")" + geneSymbolMessage + " found to be duplicated in your file. Skipping this duplicated entry of the gene."); - continue; - } - if (canonicalGene != null) { - if (canonicalGene.isMicroRNA()) { - ProgressMonitor.logWarning("ignoring miRNA: " + canonicalGene.getHugoGeneSymbolAllCaps()); - continue; - } - - genes.add(canonicalGene); - alreadyProcessedGenes.add(canonicalGene); - } - else { - ProgressMonitor.logWarning("Gene " + gene + " not found or was ambiguous. Skipping this gene."); - } - - } - // -- end parse genes -- - - if (genes.size() == 0) { - ProgressMonitor.logWarning("No genes found in database for " + fields[genesField] + ". Skipping gistic event"); - return null; - } - gistic.setGenes_in_ROI(genes); - - return gistic; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GlobalProperties.java b/core/src/main/java/org/mskcc/cbio/portal/util/GlobalProperties.java deleted file mode 100644 index 18209811460..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GlobalProperties.java +++ /dev/null @@ -1,1341 +0,0 @@ -/* - * Copyright (c) 2015 - 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.FileReader; -import java.io.IOException; -import java.io.InputStream; -import java.nio.charset.StandardCharsets; -import java.nio.file.Files; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; -import java.util.Collections; -import java.util.LinkedList; -import java.util.List; -import java.util.Properties; - -import org.apache.commons.lang.StringUtils; -import org.cbioportal.security.spring.authentication.PortalUserDetails; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.authority.SimpleGrantedAuthority; -import org.springframework.security.core.context.SecurityContextHolder; -import org.springframework.stereotype.Component; -import org.springframework.util.ResourceUtils; - - -/** - * Utility class for getting / setting global properties. - */ -@Component -public class GlobalProperties { - - public static final String HOME_DIR = "PORTAL_HOME"; - private static final String PORTAL_PROPERTIES_FILE_NAME = "portal.properties"; - private static final String MAVEN_PROPERTIES_FILE_NAME = "maven.properties"; - - public static final String PATHWAY_COMMONS_URL = "pathway_commons.url"; - public static final String UCSC_CANCER_GENOMICS_URL = "ucsc_cancer_genomics.url"; - public static final String SEGFILE_URL = "segfile.url"; - public static final String OPENSSL_BINARY = "openssl.binary"; - public static final String SIGNATURE_KEY = "signature.key"; - public static final String ENCRYPTION_KEY = "encryption.key"; - public static final String BROAD_BAM_URL = "broad.bam.url"; - public static final String BROAD_BAM_CHECKING_URL = "broad.bam.checking.url"; - public static final String IGV_BAM_LINKING = "igv.bam.linking"; - public static final String IGV_BAM_LINKING_STUDIES = "igv.bam.linking.studies"; - private static String authenticate; - @Value("${authenticate:false}") // default is false - public void setAuthenticate(String property) { authenticate = property; } - public static final String FILTER_GROUPS_BY_APPNAME = "filter_groups_by_appname"; - public static final String INCLUDE_NETWORKS = "include_networks"; - public static final String GOOGLE_ANALYTICS_PROFILE_ID = "google_analytics_profile_id"; - - - private static String frontendSentryEndpoint; - @Value("${sentryjs.frontend_project_endpoint:null}") - public void setfrontendSentryEndpoint(String property) { frontendSentryEndpoint = property; } - - public static final String GENOMESPACE = "genomespace"; - - public static final String APP_NAME = "app.name"; - public static final String DEFAULT_APP_NAME = "public_portal"; - - public static final String APP_VERSION = "app.version"; - public static final String SKIN_TITLE = "skin.title"; - public static final String DEFAULT_SKIN_TITLE = "cBioPortal for Cancer Genomics"; - public static final String SKIN_BLURB = "skin.blurb"; - // blurb default - public static final String DEFAULT_SKIN_BLURB = "The cBioPortal for Cancer Genomics provides " + - "visualization, analysis and download of large-scale cancer genomics data sets. " + - "

    Please adhere to " + - "the TCGA publication guidelines when using TCGA data in your publications.

    " + - "

    Please cite Gao " + - "et al. Sci. Signal. 2013 & " + - "" + - "Cerami et al. Cancer Discov. 2012 when publishing results based on cBioPortal.

    \n"; - public static final String SKIN_TAG_LINE_IMAGE = "skin.tag_line_image"; - public static final String DEFAULT_SKIN_TAG_LINE_IMAGE = "images/tag_line.png"; - public static final String SKIN_EMAIL_CONTACT = "skin.email_contact"; - public static final String DEFAULT_EMAIL_CONTACT = "cbioportal at googlegroups dot com"; - public static final String SKIN_SHOW_NEWS_TAB = "skin.show_news_tab"; - public static final String SKIN_SHOW_DATA_TAB = "skin.show_data_tab"; - public static final String SKIN_RIGHT_NAV_SHOW_DATA_SETS = "skin.right_nav.show_data_sets"; - public static final String SKIN_RIGHT_NAV_SHOW_EXAMPLES = "skin.right_nav.show_examples"; - public static final String SKIN_RIGHT_NAV_SHOW_TESTIMONIALS = "skin.right_nav.show_testimonials"; - public static final String SKIN_RIGHT_NAV_SHOW_WHATS_NEW = "skin.right_nav.show_whats_new"; - public static final String SKIN_RIGHT_NAV_SHOW_WEB_TOURS = "skin.right_nav.show_web_tours"; - private static String skinAuthorizationMessage; - @Value("${skin.authorization_message:Access to this portal is only available to authorized users.}") - public void setSkinAuthorizationMessage(String property) { skinAuthorizationMessage = property; } - public static final String SKIN_USER_DISPLAY_NAME = "skin.user_display_name"; - public static final String SKIN_EXAMPLE_STUDY_QUERIES = "skin.example_study_queries"; - public static final String DEFAULT_SKIN_EXAMPLE_STUDY_QUERIES = - "tcga pancancer atlas\n" + - "tcga provisional\n" + - "tcga -provisional -pancancer\n" + - "tcga or icgc\n" + - "msk-impact\n" + - "-\"cell line\"\n" + - "breast\n" + - "esophageal OR stomach\n" + - "prostate msk\n" + - "serous"; - public static final String SKIN_DATASETS_HEADER = "skin.data_sets_header"; - public static final String DEFAULT_SKIN_DATASETS_HEADER = "The portal currently contains data from the following " + - "cancer genomics studies. The table below lists the number of available samples per data type and tumor."; - public static final String SKIN_DATASETS_FOOTER = "skin.data_sets_footer"; - public static final String DEFAULT_SKIN_DATASETS_FOOTER = "Data sets of TCGA studies were downloaded from Broad " + - "Firehose (http://gdac.broadinstitute.org) and updated monthly. In some studies, data sets were from the " + - "TCGA working groups directly."; - - public static final String PATIENT_VIEW_PLACEHOLDER = "patient_view_placeholder"; - public static final String PATIENT_VIEW_DIGITAL_SLIDE_IFRAME_URL = "digitalslidearchive.iframe.url"; - public static final String PATIENT_VIEW_DIGITAL_SLIDE_META_URL = "digitalslidearchive.meta.url"; - - public static final String PATIENT_VIEW_MDACC_HEATMAP_META_URL = "mdacc.heatmap.meta.url"; - public static final String PATIENT_VIEW_MDACC_HEATMAP_URL = "mdacc.heatmap.patient.url"; - - public static final String STUDY_VIEW_MDACC_HEATMAP_URL = "mdacc.heatmap.study.url"; - public static final String STUDY_VIEW_MDACC_HEATMAP_META_URL = "mdacc.heatmap.study.meta.url"; - - public static final String SHOW_ONCOKB = "show.oncokb"; - public static final String MERGE_ONCOKB_ICONS_BY_DEFAULT = "oncokb.merge_icons_by_default"; - public static final String ONCOKB_TOKEN = "oncokb.token"; - - private static String sessionServiceURL; - @Value("${session.service.url:}") // default is empty string - public void setSessionServiceURL(String property) { sessionServiceURL = property; } - - private static String sessionServiceUser; - @Value("${session.service.user:}") // default is empty string - public void setSessionServiceUser(String property) { sessionServiceUser = property; } - - private static String sessionServicePassword; - @Value("${session.service.password:}") // default is empty string - public void setSessionServicePassword(String property) { sessionServicePassword = property; } - - private static String frontendConfig; - @Value("${frontend.config:}") // default is empty string - public void setFrontendConfig(String property) { frontendConfig = property; } - - private static String oncoprintClinicalTracksConfigJson; - @Value("${oncoprint.clinical_tracks.config_json:}") // default is empty string - public void setOncoprintClinicalTracksConfigJson(String property) { - oncoprintClinicalTracksConfigJson = property; - } - - private static String skinPatientViewCustomSampleTypeColorsJson; - @Value("${skin.patient_view.custom_sample_type_colors_json:}") // default is empty string - public void setSkinPatientViewCustomSampleTypeColorsJson(String property) { - skinPatientViewCustomSampleTypeColorsJson = property; - } - - // properties for showing the right logo in the header_bar and default logo - public static final String SKIN_RIGHT_LOGO = "skin.right_logo"; - - // properties for hiding/showing tabs in the header navigation bar - public static final String SKIN_SHOW_WEB_API_TAB = "skin.show_web_api_tab"; - public static final String SKIN_SHOW_R_MATLAB_TAB = "skin.show_r_matlab_tab"; - public static final String SKIN_SHOW_TUTORIALS_TAB = "skin.show_tutorials_tab"; - public static final String SKIN_SHOW_FAQS_TAB = "skin.show_faqs_tab"; - public static final String SKIN_SHOW_TOOLS_TAB = "skin.show_tools_tab"; - public static final String SKIN_SHOW_ABOUT_TAB = "skin.show_about_tab"; - - // property for setting the news blurb in the right column - public static final String SKIN_RIGHT_NAV_WHATS_NEW_BLURB = "skin.right_nav.whats_new_blurb"; - public static final String DEFAULT_SKIN_WHATS_NEW_BLURB = ""; // default is in cbioportal-frontend repo - - // footer - public static final String SKIN_FOOTER = "skin.footer"; - public static final String DEFAULT_SKIN_FOOTER = ""; // default is in cbioportal-frontend repo - - // login contact - public static final String SKIN_LOGIN_CONTACT_HTML = "skin.login.contact_html"; - public static final String DEFAULT_SKIN_LOGIN_CONTACT_HTML = "If you think you have received this message in " + - "error, please contact us at " + - "cbioportal-access@cbio.mskcc.org"; - - // property for setting the saml registration html - public static final String SKIN_LOGIN_SAML_REGISTRATION_HTML = "skin.login.saml.registration_html"; - public static final String DEFAULT_SKIN_LOGIN_SAML_REGISTRATION_HTML = "Sign in with MSK"; - - // property for the saml entityid - public static final String SAML_IDP_METADATA_ENTITYID="saml.idp.metadata.entityid"; - // property for whether the SAML logout should be local (at SP level) or global (at IDP level). Default: false (global) - public static final String SAML_IS_LOGOUT_LOCAL="saml.logout.local"; - - // property for the custom header tabs - public static final String SKIN_CUSTOM_HEADER_TABS="skin.custom_header_tabs"; - - // properties for the FAQ, about us, news and examples - public static final String SKIN_BASEURL="skin.documentation.baseurl"; - public static final String DEFAULT_SKIN_BASEURL="https://raw.githubusercontent.com/cBioPortal/cbioportal/master/docs/"; - public static final String SKIN_DOCUMENTATION_MARKDOWN="skin.documentation.markdown"; - - public static final String SKIN_FAQ="skin.documentation.faq"; - public static final String DEFAULT_SKIN_FAQ="user-guide/faq.md"; - public static final String SKIN_ABOUT="skin.documentation.about"; - public static final String DEFAULT_SKIN_ABOUT="About-Us.md"; - public static final String SKIN_NEWS="skin.documentation.news"; - public static final String DEFAULT_SKIN_NEWS="News.md"; - public static final String SKIN_OQL="skin.documentation.oql"; - public static final String DEFAULT_SKIN_OQL="user-guide/oql.md"; - - public static final String SKIN_EXAMPLES_RIGHT_COLUMN_HTML="skin.examples_right_column_html"; - - public static final String ALWAYS_SHOW_STUDY_GROUP="always_show_study_group"; - - // property for query component - public static final String SKIN_QUERY_MAX_TREE_DEPTH="skin.query.max_tree_depth"; - public static final Number DEFAULT_QUERY_MAX_TREE_DEPTH=3; - - // property for text shown at the right side of the Select Patient/Case set, which - // links to the study view - public static final String SKIN_STUDY_VIEW_LINK_TEXT="skin.study_view.link_text"; - public static final String DEFAULT_SKIN_STUDY_VIEW_LINK_TEXT="To build your own case set, try out our enhanced " + - "Study View."; - - public static final String MYCANCERGENOME_SHOW = "mycancergenome.show"; - public static final String ONCOKB_GENE_STATUS = "oncokb.geneStatus"; - public static final String SHOW_HOTSPOT = "show.hotspot"; - - public static final String DB_VERSION = "db.version"; - private static boolean suppressSchemaVersionMismatchErrors; - @Value("${db.suppress_schema_version_mismatch_errors:false}") // default is false - public void setSuppressSchemaVersionMismatchErrors(String property) { suppressSchemaVersionMismatchErrors = Boolean.parseBoolean(property); } - - public static final String DARWIN_AUTH_URL = "darwin.auth_url"; - public static final String DDP_RESPONSE_URL = "ddp.response_url"; - public static final String CIS_USER = "cis.user"; - public static final String DISABLED_TABS = "disabled_tabs"; - public static final String BITLY_USER = "bitly.user"; - public static final String DARWIN_REGEX = "darwin.regex"; - - public static final String PRIORITY_STUDIES = "priority_studies"; - public static final String SPECIES = "species"; - public static final String DEFAULT_SPECIES = "human"; - public static final String NCBI_BUILD = "ncbi.build"; - public static final String DEFAULT_NCBI_BUILD = "37"; - public static final String UCSC_BUILD = "ucsc.build"; - public static final String DEFAULT_UCSC_BUILD = "hg19"; - - public static final String ONCOPRINT_DEFAULTVIEW = "oncoprint.defaultview"; - - public static final String SETSOFGENES_LOCATION = "querypage.setsofgenes.location"; - - public static final String MSK_WHOLE_SLIDE_VIEWER_SECRET_KEY = "msk.whole.slide.viewer.secret.key"; - - private static boolean showCivic; - @Value("${show.civic:false}") // default is false - public void setShowCivic(String property) { showCivic = Boolean.parseBoolean(property); } - - private static boolean sitemaps; - @Value("${sitemaps:false}") // default is false - public void setSitemaps(String property) { sitemaps = Boolean.parseBoolean(property); } - - private static boolean showTranscriptDropdown; - @Value("${show.transcript_dropdown:false}") // default is false - public void setShowTranscriptDropdown(String property) { showTranscriptDropdown = Boolean.parseBoolean(property); } - - private static boolean showGenomeNexus; - @Value("${show.genomenexus:true}") // default is true - public void setShowGenomeNexus(String property) { showGenomeNexus = Boolean.parseBoolean(property); } - - // TODO should support more sources such as clinvar,gnomad,sift - private static String showGenomeNexusAnnotationSources; - @Value("${show.genomenexus.annotation_sources:mutation_assessor}") // Available sources: mutation_assessor - public void setShowGenomeNexusAnnotationSources(String property) { showGenomeNexusAnnotationSources = property; } - - private static String genomeNexusIsoformOverrideSource; - @Value("${genomenexus.isoform_override_source:mskcc}") // Options: mskcc, uniprot - public void setGenomeNexusIsoformOverrideSource(String property) { genomeNexusIsoformOverrideSource = property; } - - private static boolean showMutationMapperToolGrch38; - @Value("${show.mutation_mappert_tool.grch38:true}") // default is true - public void setShowMutationMapperToolGrch38(String property) { showMutationMapperToolGrch38 = Boolean.parseBoolean(property); } - - private static boolean showSignal; - @Value("${show.signal:false}") // default is false - public void setShowSignal(String property) { showSignal = Boolean.parseBoolean(property); } - - private static boolean showNdex; - @Value("${show.ndex:true}") // default is true - public void setShowNdex(String property) { showNdex = Boolean.parseBoolean(property); } - - /* - * Trim whitespace of url and append / if it does not exist. Return empty - * string otherwise. - */ - public static String parseUrl(String url) - { - String rv; - - if (!url.isEmpty()) { - rv = url.trim(); - - if (!rv.endsWith("/")) { - rv += "/"; - } - } else { - rv = ""; - } - - return rv; - } - - public static final String BINARY_CUSTOM_DRIVER_ANNOTATION_MENU_LABEL = "oncoprint.custom_driver_annotation.binary.menu_label"; - public static final String TIERS_CUSTOM_DRIVER_ANNOTATION_MENU_LABEL = "oncoprint.custom_driver_annotation.tiers.menu_label"; - public static final String ENABLE_DRIVER_ANNOTATIONS = "oncoprint.custom_driver_annotation.binary.default"; - public static final String ENABLE_TIERS = "oncoprint.custom_driver_annotation.tiers.default"; - public static final String ENABLE_ONCOKB_AND_HOTSPOTS_ANNOTATIONS = "oncoprint.oncokb_hotspots.default"; - public static final String HIDE_PASSENGER_MUTATIONS = "oncoprint.hide_vus.default"; - - private static String civicUrl; - @Value("${civic.url:https://civicdb.org/api/}") // default - public void setCivicUrl(String property) { civicUrl = parseUrl(property); } - - private static String genomeNexusApiUrl; - @Value("${genomenexus.url:v1.genomenexus.org}") // default - public void setGenomeNexusApiUrl(String property) { genomeNexusApiUrl = parseUrl(property); } - - private static String genomeNexusGrch38ApiUrl; - @Value("${genomenexus.url.grch38:grch38.genomenexus.org}") // default - public void setGenomeNexusGrch38ApiUrl(String property) { genomeNexusGrch38ApiUrl = parseUrl(property); } - - private static String frontendUrl; - @Value("${frontend.url:}") // default is empty string - public void setFrontendUrl(String property) { frontendUrl = parseUrl(property); } - - /* read frontendUrl from this file at runtime (TODO: read from URL), - * overrides frontend.url */ - private static String frontendUrlRuntime; - @Value("${frontend.url.runtime:}") - public void setFrontendUrlRuntime(String property) { frontendUrlRuntime = property; } - - private static String downloadGroup; - @Value("${download_group:}") // default is empty string - public void setDownloadGroup(String property) { downloadGroup = property; } - - public static final String DEFAULT_DAT_METHOD = "none"; - - private static String dataAccessTokenMethod; - @Value("${dat.method:none}") // default is empty string - public void setDataAccessTokenMethod(String property) { dataAccessTokenMethod = property; } - - private static String tokenAccessUserRole; - @Value("${dat.filter_user_role:}") // default is empty string - public void setTokenAccessUserRole(String property) { tokenAccessUserRole = property; } - - private static Logger LOG = LoggerFactory.getLogger(GlobalProperties.class); - private static ConfigPropertyResolver portalProperties = new ConfigPropertyResolver(); - private static Properties mavenProperties = initializeProperties(MAVEN_PROPERTIES_FILE_NAME); - - /** - * Minimal portal property resolver that takes system property overrides. - * - * Provides properties from runtime or the baked-in - * portal.properties config file, but takes overrides from -D - * system properties. - */ - private static class ConfigPropertyResolver { - private Properties configFileProperties; - /** - * Finds the config file for properties not overridden by system props. - * - * Either the runtime or buildtime portal.properties file. - */ - public ConfigPropertyResolver() { - configFileProperties = initializeProperties(PORTAL_PROPERTIES_FILE_NAME); - } - /** - * Finds the property with the specified key, or returns the default. - */ - public String getProperty(String key, String defaultValue) { - String propertyValue = configFileProperties.getProperty(key, defaultValue); - return System.getProperty(key, propertyValue); - } - /** - * Finds the property with the specified key, or returns null. - */ - public String getProperty(String key) { - return getProperty(key, null); - } - /** - * Tests if a property has been specified for this key. - * - * @return true iff the property was specified, even if blank. - */ - public boolean containsKey(String key) { - return getProperty(key) != null; - } - } - - private static Properties initializeProperties(String propertiesFileName) - { - return loadProperties(getResourceStream(propertiesFileName)); - } - - private static InputStream getResourceStream(String propertiesFileName) - { - String resourceFilename = null; - InputStream resourceFIS = null; - - try { - String home = System.getenv(HOME_DIR); - if (home != null) { - resourceFilename = - home + File.separator + propertiesFileName; - if (LOG.isInfoEnabled()) { - LOG.info("Attempting to read properties file: " + resourceFilename); - } - resourceFIS = new FileInputStream(resourceFilename); - if (LOG.isInfoEnabled()) { - LOG.info("Successfully read properties file"); - } - } - } - catch (FileNotFoundException e) { - if (LOG.isInfoEnabled()) { - LOG.info("Failed to read properties file: " + resourceFilename); - } - } - - if (resourceFIS == null) { - if (LOG.isInfoEnabled()) { - LOG.info("Attempting to read properties file from classpath"); - } - resourceFIS = GlobalProperties.class.getClassLoader(). - getResourceAsStream(propertiesFileName); - if (LOG.isInfoEnabled()) { - LOG.info("Successfully read properties file"); - } - } - - return resourceFIS; - } - - private static Properties loadProperties(InputStream resourceInputStream) - { - Properties properties = new Properties(); - - try { - properties.load(resourceInputStream); - resourceInputStream.close(); - } - catch (IOException e) { - if (LOG.isErrorEnabled()) { - LOG.error("Error loading properties file: " + e.getMessage()); - } - } - - return properties; - } - - public static String getPathwayCommonsUrl() - { - return portalProperties.getProperty(PATHWAY_COMMONS_URL); - } - - public static String getUcscCancerGenomicsUrl() - { - return portalProperties.getProperty(UCSC_CANCER_GENOMICS_URL); - } - - public static String getSegfileUrl() - { - return portalProperties.getProperty(SEGFILE_URL); - } - - public static String getProperty(String property) - { - return (portalProperties.containsKey(property)) ? portalProperties.getProperty(property) : null; - } - - public static boolean wantIGVBAMLinking() { - String igvBamLinking = portalProperties.getProperty(IGV_BAM_LINKING); - return igvBamLinking!=null && igvBamLinking.equals("true"); - } - - public static Collection getIGVBAMLinkingStudies() { - String igvBamLinkingStudies = portalProperties.getProperty(IGV_BAM_LINKING_STUDIES); - if (igvBamLinkingStudies==null) { - return Collections.emptyList(); - } - String[] studies = igvBamLinkingStudies.split(":"); - return (studies.length > 0) ? Arrays.asList(studies) : Collections.emptyList(); - } - - // This method is the equivalent of @portalSecurityConfig.userAuthorizationEnabled() - // method in the org.cbioportal.utils package. Update both when changes are needed. - public static boolean usersMustAuthenticate() - { - // authentication for social_auth/social_auth_google/social_auth_microsoft is optional - return (!authenticate.isEmpty() && !authenticate.equals("noauthsessionservice") && !authenticate.equals("false") && !authenticate.contains("social_auth")); - } - - public static String authenticationMethod() - { - return authenticate; - } - - /** - * Return authenticated username - * @return String userName - * Return authenticated username. If the user is not authenticated, 'anonymousUser' will be returned. - */ - public static String getAuthenticatedDisplayName() { - String authenticatedParameter = portalProperties.getProperty(SKIN_USER_DISPLAY_NAME); - if (authenticatedParameter != null && authenticatedParameter.equals("username")) { - return getAuthenticatedUserName(); - } else { - return getAuthenticatedUserEmail(); //Default is email - } - } - - public static String getAuthenticatedUserName() { - Authentication authentication = SecurityContextHolder.getContext().getAuthentication(); - - if(authentication != null) { - PortalUserDetails userDetails = (PortalUserDetails) authentication.getPrincipal(); - return userDetails.getUserName(); - - }else { - return "anonymousUser"; - } - } - - public static String getAuthenticatedUserEmail() { - Authentication authentication = SecurityContextHolder.getContext().getAuthentication(); - - if(authentication != null) { - return authentication.getName(); - - }else { - return "anonymousUser"; - } - } - - public static String getAppName() - { - String appName = portalProperties.getProperty(APP_NAME); - return (appName == null) ? DEFAULT_APP_NAME : appName; - } - - public static String getAppVersion() - { - String appVersion = mavenProperties.getProperty(APP_VERSION); - return (appVersion == null) ? "1.0" : appVersion; - } - - public static String getTitle() - { - String skinTitle = portalProperties.getProperty(SKIN_TITLE); - return (skinTitle == null) ? DEFAULT_SKIN_TITLE : skinTitle; - } - // updated function to use a default if nothing is specified - public static String getBlurb() - { - String skinBlurb = portalProperties.getProperty(SKIN_BLURB); - return (skinBlurb == null) ? DEFAULT_SKIN_BLURB : skinBlurb; - } - // get custom FAQ html or the default - public static String getFaqHtml() - { - String faqHtml = portalProperties.getProperty(SKIN_FAQ); - return (faqHtml == null) ? DEFAULT_SKIN_FAQ : getContentString(faqHtml); - } - // get custom About html or the default - public static String getAboutHtml() - { - String aboutHtml = portalProperties.getProperty(SKIN_ABOUT); - return (aboutHtml == null) ? DEFAULT_SKIN_ABOUT : getContentString(aboutHtml); - } - // get custom News html or the default - public static String getNewsHtml() - { - String newsHtml = portalProperties.getProperty(SKIN_NEWS); - return (newsHtml == null) ? DEFAULT_SKIN_NEWS : getContentString(newsHtml); - } - - public static String getOqlHtml() - { - String oqlHtml = portalProperties.getProperty(SKIN_OQL); - return (oqlHtml == null) ? DEFAULT_SKIN_OQL : getContentString(oqlHtml); - } - // get custom News html or the default - public static String getBaseUrl() - { - String baseUrl = portalProperties.getProperty(SKIN_BASEURL); - return (baseUrl == null) ? DEFAULT_SKIN_BASEURL : baseUrl; - } - public static boolean isMarkdownDocumentation() - { - String markdownFlag = portalProperties.getProperty(SKIN_DOCUMENTATION_MARKDOWN); - return markdownFlag == null || Boolean.parseBoolean(markdownFlag); - } - - //get max tree depth - public static Number getMaxTreeDepth() - { - String maxTreeDepth = portalProperties.getProperty(SKIN_QUERY_MAX_TREE_DEPTH); - return (maxTreeDepth == null) ? DEFAULT_QUERY_MAX_TREE_DEPTH : Integer.parseInt(maxTreeDepth); - } - - // get custom Example Queries for the right column html or the default - public static String getExamplesRightColumnHtml() - { - String examplesRightColumnHtml = portalProperties.getProperty(SKIN_EXAMPLES_RIGHT_COLUMN_HTML); - return examplesRightColumnHtml == null? "": examplesRightColumnHtml; - } - - private static String getContentString(String contentString){ - if(getBaseUrl().equalsIgnoreCase("")) return "content/"+contentString; - return contentString; - } - - // get the login contact html - public static String getLoginContactHtml() - { - String loginContactHtml = portalProperties.getProperty(SKIN_LOGIN_CONTACT_HTML); - return (loginContactHtml == null) ? DEFAULT_SKIN_LOGIN_CONTACT_HTML : loginContactHtml; - } - // get the text for the saml login button - public static String getLoginSamlRegistrationHtml() - { - String loginSamlRegistrationHtml = portalProperties.getProperty(SKIN_LOGIN_SAML_REGISTRATION_HTML); - return (loginSamlRegistrationHtml == null) ? DEFAULT_SKIN_LOGIN_SAML_REGISTRATION_HTML : loginSamlRegistrationHtml; - } - public static String getSamlIdpMetadataEntityid() - { - return getProperty(SAML_IDP_METADATA_ENTITYID); - } - - // returns whether the SAML logout should be local (at SP level) or global (at IDP level). Default: false (global) - public static String getSamlIsLogoutLocal() - { - return portalProperties.getProperty(SAML_IS_LOGOUT_LOCAL, "false"); - } - - public static String getTagLineImage() - { - String tagLineImage = portalProperties.getProperty(SKIN_TAG_LINE_IMAGE); - return (tagLineImage == null) ? DEFAULT_SKIN_TAG_LINE_IMAGE : "images/" + tagLineImage; - } - - // function for retrieving the right logo, used by the header_bar - public static String getRightLogo() - { - String rightLogo = portalProperties.getProperty(SKIN_RIGHT_LOGO); - return (rightLogo == null || "".equals(rightLogo)) ? "" : "images/" + rightLogo; - } - - // function for retrieving the footer text - public static String getFooter(){ - String footer = portalProperties.getProperty(SKIN_FOOTER); - return (footer == null) ? DEFAULT_SKIN_FOOTER : footer; - } - // function for retrieving the studyview link text - public static String getStudyviewLinkText(){ - String studyviewLinkText = portalProperties.getProperty(SKIN_STUDY_VIEW_LINK_TEXT); - return (studyviewLinkText == null) ? DEFAULT_SKIN_STUDY_VIEW_LINK_TEXT : studyviewLinkText; - } - - public static String getEmailContact() - { - String emailAddress = portalProperties.getProperty(SKIN_EMAIL_CONTACT); - if (emailAddress == null) - emailAddress = DEFAULT_EMAIL_CONTACT; - return ( - "" + - emailAddress + - "" - ); - } - - public static boolean includeNetworks() - { - return Boolean.parseBoolean(portalProperties.getProperty(INCLUDE_NETWORKS)); - } - - public static String getGoogleAnalyticsProfileId() - { - return portalProperties.getProperty(GOOGLE_ANALYTICS_PROFILE_ID); - } - - public static String getFrontendSentryEndpoint() - { - return (frontendSentryEndpoint == null) ? null : frontendSentryEndpoint.trim(); - } - - public static boolean genomespaceEnabled() - { - return Boolean.parseBoolean(portalProperties.getProperty(GENOMESPACE)); - } - - public static boolean showPlaceholderInPatientView() - { - return Boolean.parseBoolean(portalProperties.getProperty(PATIENT_VIEW_PLACEHOLDER)); - } - - public static boolean showNewsTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_NEWS_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - - public static boolean showDataTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_DATA_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - - // show or hide the web api tab in header navigation bar - public static boolean showWebApiTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_WEB_API_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - // show or hide the r matlab tab in header navigation bar - public static boolean showRMatlabTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_R_MATLAB_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - // show or hide the tutorial tab in header navigation bar - public static boolean showTutorialsTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_TUTORIALS_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - // show or hide the faqs tab in header navigation bar - public static boolean showFaqsTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_FAQS_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - // show or hide the tools tab in header navigation bar - public static boolean showToolsTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_TOOLS_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - // show or hide the about tab in header navigation bar - public static boolean showAboutTab() - { - String showFlag = portalProperties.getProperty(SKIN_SHOW_ABOUT_TAB); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - // get the text for the What's New in the right navigation bar - public static String getRightNavWhatsNewBlurb(){ - String whatsNewBlurb = portalProperties.getProperty(SKIN_RIGHT_NAV_WHATS_NEW_BLURB); - return (whatsNewBlurb == null) ? DEFAULT_SKIN_WHATS_NEW_BLURB : whatsNewBlurb; - } - public static boolean showRightNavDataSets() - { - String showFlag = portalProperties.getProperty(SKIN_RIGHT_NAV_SHOW_DATA_SETS); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - public static boolean showRightNavExamples() - { - String showFlag = portalProperties.getProperty(SKIN_RIGHT_NAV_SHOW_EXAMPLES); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - - public static boolean showRightNavTestimonials() - { - String showFlag = portalProperties.getProperty(SKIN_RIGHT_NAV_SHOW_TESTIMONIALS); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - - public static boolean showRightNavWhatsNew() - { - String showFlag = portalProperties.getProperty(SKIN_RIGHT_NAV_SHOW_WHATS_NEW); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - - public static boolean showRightNavWebTours() - { - String showFlag = portalProperties.getProperty(SKIN_RIGHT_NAV_SHOW_WEB_TOURS); - return showFlag == null || Boolean.parseBoolean(showFlag); - } - - public static String getAuthorizationMessage() - { - return skinAuthorizationMessage; - } - - public static String getExampleStudyQueries() { - return portalProperties.getProperty( - SKIN_EXAMPLE_STUDY_QUERIES, - DEFAULT_SKIN_EXAMPLE_STUDY_QUERIES); - } - - // added usage of default data sets header - public static String getDataSetsHeader() - { - String dataSetsHeader = portalProperties.getProperty(SKIN_DATASETS_HEADER); - return dataSetsHeader == null ? DEFAULT_SKIN_DATASETS_HEADER : dataSetsHeader; - } - - // added usage of default data sets footer - public static String getDataSetsFooter() - { - String dataSetsFooter = portalProperties.getProperty(SKIN_DATASETS_FOOTER); - return dataSetsFooter == null ? DEFAULT_SKIN_DATASETS_FOOTER : dataSetsFooter; - } - - public static String getSpecies(){ - String species = portalProperties.getProperty(SPECIES); - return species == null ? DEFAULT_SPECIES : species; - } - - public static String getNCBIBuild(){ - String NCBIBuild = portalProperties.getProperty(NCBI_BUILD); - return NCBIBuild == null ? DEFAULT_NCBI_BUILD : NCBIBuild; - } - - public static String getGenomicBuild(){ - String genomicBuild = portalProperties.getProperty(UCSC_BUILD); - return genomicBuild == null ? DEFAULT_UCSC_BUILD : genomicBuild; - } - - public static String getLinkToPatientView(String caseId, String cancerStudyId) - { - return "patient?caseId=" + caseId - + "&studyId=" + cancerStudyId; - } - - public static String getLinkToSampleView(String caseId, String cancerStudyId) - { - return "patient?sampleId=" + caseId - + "&studyId=" + cancerStudyId; - } - - public static String getLinkToCancerStudyView(String cancerStudyId) - { - return "study?id=" + cancerStudyId; - } - - public static String getLinkToIGVForBAM(String cancerStudyId, String caseId, String locus) - { - return ("igvlinking.json?" + - org.mskcc.cbio.portal.servlet.IGVLinkingJSON.CANCER_STUDY_ID + - "=" + cancerStudyId + - "&" + org.mskcc.cbio.portal.servlet.IGVLinkingJSON.CASE_ID + - "=" + caseId + - "&" + org.mskcc.cbio.portal.servlet.IGVLinkingJSON.LOCUS + - "=" + locus); - } - - public static String getDigitalSlideArchiveIframeUrl(String caseId) - { - String url = portalProperties.getProperty(PATIENT_VIEW_DIGITAL_SLIDE_IFRAME_URL); - return url+caseId; - } - - public static String getDigitalSlideArchiveMetaUrl(String caseId) - { - String url = portalProperties.getProperty(PATIENT_VIEW_DIGITAL_SLIDE_META_URL); - return url+caseId; - } - - public static String getStudyHeatmapMetaUrl() - { - String url = portalProperties.getProperty(STUDY_VIEW_MDACC_HEATMAP_META_URL); - return url; - } - - public static String getStudyHeatmapViewerUrl() - { - String url = portalProperties.getProperty(STUDY_VIEW_MDACC_HEATMAP_URL); - return url; - } - - public static String getPatientHeatmapMetaUrl(String caseId) - { - String url = portalProperties.getProperty(PATIENT_VIEW_MDACC_HEATMAP_META_URL); - if (url == null || url.length() == 0) return null; - return url + caseId; - } - - public static String getPatientHeatmapViewerUrl(String caseId) - { - String url = portalProperties.getProperty(PATIENT_VIEW_MDACC_HEATMAP_URL); - if (url == null || url.length() == 0) return null; - return url + caseId; - } - - // function for getting the custom tabs for the header - public static String[] getCustomHeaderTabs(){ - String customPagesString = GlobalProperties.getProperty(SKIN_CUSTOM_HEADER_TABS); - if(customPagesString!=null){ - // split by comma and return the String array - return customPagesString.split(","); - } - return null; - } - - public static String getSessionServiceUrl() - { - return sessionServiceURL; - } - - public static String getSessionServiceUser() - { - return sessionServiceUser; - } - - public static String getSessionServicePassword() - { - return sessionServicePassword; - } - - public static String getCivicUrl() { - return civicUrl; - } - - public static String getGenomeNexusApiUrl() { - return genomeNexusApiUrl; - } - - public static String getGenomeNexusGrch38ApiUrl() { - return genomeNexusGrch38ApiUrl; - } - - public static boolean showOncoKB() { - String showOncokb = portalProperties.getProperty(SHOW_ONCOKB); - if (showOncokb==null || showOncokb.isEmpty()) { - return true; // show oncoKB by default - } else { - return Boolean.parseBoolean(showOncokb); - } - } - - public static boolean mergeOncoKBIcons() { - String mergeOncoKbIconsByDefault = portalProperties.getProperty(MERGE_ONCOKB_ICONS_BY_DEFAULT); - if (mergeOncoKbIconsByDefault == null || mergeOncoKbIconsByDefault.isEmpty()) { - return true; // merge OncoKB icons by default - } else { - return Boolean.parseBoolean(mergeOncoKbIconsByDefault); - } - } - - public static boolean showHotspot() { - String hotspot = portalProperties.getProperty(SHOW_HOTSPOT); - if (hotspot==null) { - return true; // show hotspots by default - } - - if(!hotspot.isEmpty()) { - return Boolean.parseBoolean(hotspot); - }else{ - return true; - } - } - - public static boolean showSitemaps() { - return sitemaps; - } - - public static boolean showCivic() { - return showCivic; - } - - public static boolean showTranscriptDropdown() { - return showTranscriptDropdown; - } - - public static boolean showGenomeNexus() { - return showGenomeNexus; - } - - public static String showGenomeNexusAnnotationSources() { - return showGenomeNexusAnnotationSources; - } - - public static String getGenomeNexusIsoformOverrideSource() { - return genomeNexusIsoformOverrideSource; - } - - public static boolean showMutationMapperToolGrch38() { - return showMutationMapperToolGrch38; - } - - public static boolean showNdex() { - return showNdex; - } - - public static boolean showSignal() { - return showSignal; - } - - public static String getFrontendUrl() { - if (frontendUrlRuntime.length() > 0) { - try { - String url = parseUrl(new String(Files.readAllBytes(Paths.get(frontendUrlRuntime)), StandardCharsets.UTF_8).replaceAll("[\\r\\n]+", "")); - if (LOG.isInfoEnabled()) { - LOG.info("Using frontend from " + frontendUrlRuntime + ": " + url); - } - return url; - } catch (IOException e) { - // error reading file, use existing frontendUrl - if (LOG.isErrorEnabled()) { - LOG.error("Can't read frontend.url.runtime: " + frontendUrlRuntime); - } - } - } - return frontendUrl; - } - - public static boolean showMyCancerGenomeUrl() - { - String show = portalProperties.getProperty(MYCANCERGENOME_SHOW); - return show != null && Boolean.parseBoolean(show); - } - - public static String getOncoKBGeneStatus() - { - return portalProperties.getProperty(ONCOKB_GENE_STATUS); - } - - public static String getBitlyUser() { - String bitlyUser = portalProperties.getProperty(BITLY_USER); - if (bitlyUser == null || bitlyUser.trim().equals("")) - { - return null; - } - return bitlyUser; - } - - public static String getDbVersion() { - String version = mavenProperties.getProperty(DB_VERSION); - if (version == null) - { - return "0"; - } - return version; - } - - public static boolean isSuppressSchemaVersionMismatchErrors() { - return suppressSchemaVersionMismatchErrors; - } - - public static String getDarwinAuthCheckUrl() { - String darwinAuthUrl = ""; - if (portalProperties.containsKey(DARWIN_AUTH_URL)) { - try{ - darwinAuthUrl = portalProperties.getProperty(DARWIN_AUTH_URL); - } - catch (NullPointerException e){} - } - return darwinAuthUrl; - } - - public static String getDdpResponseUrl() { - String ddpResponseUrl = ""; - if (portalProperties.containsKey(DDP_RESPONSE_URL)) { - try{ - ddpResponseUrl = portalProperties.getProperty(DDP_RESPONSE_URL); - } - catch (NullPointerException e) {} - } - return ddpResponseUrl; - } - - public static List getPriorityStudies() { - List priorityStudiesObject = new LinkedList<>(); - try { - String priorityStudies = portalProperties.getProperty(PRIORITY_STUDIES).trim(); - for (String priorityStudyCategory: priorityStudies.split(";")) { - String[] elements = priorityStudyCategory.split("[#,]"); - elements = Arrays.stream(elements).filter(s -> s.length() > 0).toArray(String[]::new); - if (elements.length > 1) { - priorityStudiesObject.add(elements); - } - } - } catch (NullPointerException e) {} - return priorityStudiesObject; - } - - public static String getCisUser() { - String cisUser = ""; - if (portalProperties.containsKey(CIS_USER)) { - try{ - cisUser = portalProperties.getProperty(CIS_USER); - } - catch (NullPointerException e) {} - } - return cisUser; - } - - - public static String getDarwinRegex() { - String darwinRegex = ""; - if (portalProperties.containsKey(DARWIN_REGEX)) { - try { - darwinRegex = portalProperties.getProperty(DARWIN_REGEX); - } - catch (NullPointerException e) {} - } - return darwinRegex; - } - - public static List getDisabledTabs() { - String disabledTabs = ""; - try { - disabledTabs = portalProperties.getProperty(DISABLED_TABS).trim(); - } - catch (NullPointerException e) {} - - String[] tabs = disabledTabs.split("\\|"); - return (tabs.length > 0 && disabledTabs.length() > 0) ? Arrays.asList(tabs) : new ArrayList(); - } - - public static String getDefaultOncoprintView() { - String defaultOncoprintView = portalProperties.getProperty(ONCOPRINT_DEFAULTVIEW); - if (defaultOncoprintView == null || defaultOncoprintView.isEmpty()) { - return "patient"; - } - return defaultOncoprintView.trim(); - } - - public static boolean enableDriverAnnotations() { - String enableDriverAnnotations = portalProperties.getProperty(ENABLE_DRIVER_ANNOTATIONS, "true"); - if (!showBinaryCustomDriverAnnotation()) { - return false; // do not enable driver annotations by default - } - return Boolean.parseBoolean(enableDriverAnnotations); - } - - public static boolean enableTiers() { - String enableTiers = portalProperties.getProperty(ENABLE_TIERS, "true"); - if (!showTiersCustomDriverAnnotation()) { - return false; // do not enable driver annotations by default - } - return Boolean.parseBoolean(enableTiers); - } - - public static String enableOncoKBandHotspots() { - String enableOncoKBandHotspots = portalProperties.getProperty(ENABLE_ONCOKB_AND_HOTSPOTS_ANNOTATIONS, "true").trim(); - if (enableOncoKBandHotspots.equalsIgnoreCase("custom")) { - return "custom"; - } else if (enableOncoKBandHotspots.equalsIgnoreCase("false")) { - return "false"; - } - return "true"; - } - - public static String getBinaryCustomDriverAnnotationMenuLabel() - { - return portalProperties.getProperty(BINARY_CUSTOM_DRIVER_ANNOTATION_MENU_LABEL); - } - - public static String getTiersCustomDriverAnnotationMenuLabel() - { - return portalProperties.getProperty(TIERS_CUSTOM_DRIVER_ANNOTATION_MENU_LABEL); - } - - public static void main(String[] args) - { - System.out.println(getAppVersion()); - } - - public static boolean showBinaryCustomDriverAnnotation() { - if (getBinaryCustomDriverAnnotationMenuLabel()==null || getBinaryCustomDriverAnnotationMenuLabel().isEmpty()) { - return false; - } - return true; - } - - public static boolean showTiersCustomDriverAnnotation() { - if (getTiersCustomDriverAnnotationMenuLabel()==null || getTiersCustomDriverAnnotationMenuLabel().isEmpty()) { - return false; - } - return true; - } - - public static boolean hidePassengerMutations() { - String hidePassenger = portalProperties.getProperty(HIDE_PASSENGER_MUTATIONS, "false"); - return Boolean.parseBoolean(hidePassenger); - } - - public static String readFile(String fileName) - { - String result = new String(); - - if (fileName == null || fileName.trim().equals("")) { - result = null; - } else { - try { - BufferedReader br = new BufferedReader(new FileReader(ResourceUtils.getFile(fileName))); - for (String line = br.readLine(); line != null; line = br.readLine()) { - line = line.trim(); - result = result + line; - } - br.close(); - } catch (FileNotFoundException e) { - if (LOG.isErrorEnabled()) { - LOG.error("frontend config file not found: " + e.getMessage()); - } - return null; - } catch (IOException e) { - if (LOG.isErrorEnabled()) { - LOG.error("Error reading frontend config file: " + e.getMessage()); - } - return null; - } - } - return result; - } - - public static String getFrontendConfig() { - if (frontendConfig.length() > 0) { - return readFile(frontendConfig); - } else { - return null; - } - } - - public static String getOncoprintClinicalTracksConfigJson() { - if (oncoprintClinicalTracksConfigJson.length() > 0) { - return readFile(oncoprintClinicalTracksConfigJson); - } else { - return null; - } - } - - public static String getSkinPatientViewCustomSampleTypeColorsJson() { - if (skinPatientViewCustomSampleTypeColorsJson.length() > 0) { - return readFile(skinPatientViewCustomSampleTypeColorsJson); - } else { - return null; - } - } - - public static String getQuerySetsOfGenes() { - String fileName = portalProperties.getProperty(SETSOFGENES_LOCATION, null); - return readFile(fileName); - } - - public static String getMskWholeSlideViewerToken() - { - // this token is for the msk portal - // the token is generated based on users' timestamp to let the slide viewer know whether the token is expired and then decide whether to allow the user to login the viewer - // every time when we refresh the page or goto the new page, a new token should be generated - Authentication authentication = SecurityContextHolder.getContext().getAuthentication(); - String secretKey = portalProperties.getProperty(MSK_WHOLE_SLIDE_VIEWER_SECRET_KEY); - String timeStamp = String.valueOf(System.currentTimeMillis()); - - if(authentication != null && authentication.isAuthenticated() && secretKey != null && !secretKey.isEmpty()) { - return "{ \"token\":\"" + MskWholeSlideViewerTokenGenerator.generateTokenByHmacSHA256(authentication.getName(), secretKey, timeStamp) + "\", \"time\":\"" + timeStamp + "\"}"; - } else { - return null; - } - } - - public static String getReferenceGenomeName() { - return portalProperties.getProperty(UCSC_BUILD, DEFAULT_UCSC_BUILD); - } - - public static String getOncoKbToken() { - return portalProperties.getProperty(ONCOKB_TOKEN, null); - } - - public static String getDownloadControl() { - Authentication authentication = SecurityContextHolder.getContext().getAuthentication(); - - if (authentication != null && - StringUtils.isNotEmpty(downloadGroup) && - authentication.getAuthorities().contains(new SimpleGrantedAuthority(downloadGroup))) { - return "show"; - } else { - String downloadControlOption = getProperty("skin.hide_download_controls"); - /* - skin.hide_download_controls return_value - true hide - false show - data data - null/empty show - */ - switch ((downloadControlOption != null) ? downloadControlOption.trim().toLowerCase() : "false") { - case "true": - return "hide"; - case "data": - return "data"; - case "false": - default: - return "show"; - } - } - } - - public static String getDataAccessTokenMethod() { - Authentication authentication = SecurityContextHolder.getContext().getAuthentication(); - - if (authentication != null && - StringUtils.isNotEmpty(tokenAccessUserRole)) { - return authentication.getAuthorities().contains(new SimpleGrantedAuthority(tokenAccessUserRole)) ? dataAccessTokenMethod : DEFAULT_DAT_METHOD; - } else { - return dataAccessTokenMethod; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/HashCodeUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/HashCodeUtil.java deleted file mode 100644 index af5dffce1af..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/HashCodeUtil.java +++ /dev/null @@ -1,144 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.lang.reflect.Array; - -/** - * Collected methods which allow easy implementation of hashCode. - * - * From http://www.javapractices.com/topic/TopicAction.do;Id=28 - * - * Example use case: - * - * 
    - * public int hashCode() {
- *     int result = HashCodeUtil.SEED;
- *     // collect the contributions of various fields
- *     result = HashCodeUtil.hash(result, fPrimitive);
- *     result = HashCodeUtil.hash(result, fObject);
- *     result = HashCodeUtil.hash(result, fArray);
- *     return result;
- * }
- *
    - */ -public final class HashCodeUtil { - - /** - * An initial value for a hashCode, to which is added - * contributions from fields. Using a non-zero value decreases collisons of - * hashCode values. - */ - public static final int SEED = 23; - - /** - * booleans. - */ - public static int hash(int aSeed, boolean aBoolean) { - return firstTerm(aSeed) + (aBoolean ? 1 : 0); - } - - /** - * chars. - */ - public static int hash(int aSeed, char aChar) { - return firstTerm(aSeed) + (int) aChar; - } - - /** - * ints. - */ - public static int hash(int aSeed, int aInt) { - /* - * Implementation Note Note that byte and short are handled by this - * method, through implicit conversion. - */ - return firstTerm(aSeed) + aInt; - } - - /** - * longs. - */ - public static int hash(int aSeed, long aLong) { - return firstTerm(aSeed) + (int) (aLong ^ (aLong >>> 32)); - } - - /** - * floats. - */ - public static int hash(int aSeed, float aFloat) { - return hash(aSeed, Float.floatToIntBits(aFloat)); - } - - /** - * doubles. - */ - public static int hash(int aSeed, double aDouble) { - return hash(aSeed, Double.doubleToLongBits(aDouble)); - } - - /** - * aObject is a possibly-null object field, and possibly an - * array. - * - * If aObject is an array, then each element may be a primitive - * or a possibly-null object. - */ - public static int hash(int aSeed, Object aObject) { - int result = aSeed; - if (aObject == null) { - result = hash(result, 0); - } else if (!isArray(aObject)) { - result = hash(result, aObject.hashCode()); - } else { - int length = Array.getLength(aObject); - for (int idx = 0; idx < length; ++idx) { - Object item = Array.get(aObject, idx); - // recursive call! - result = hash(result, item); - } - } - return result; - } - - // / PRIVATE /// - private static final int fODD_PRIME_NUMBER = 37; - - private static int firstTerm(int aSeed) { - return fODD_PRIME_NUMBER * aSeed; - } - - private static boolean isArray(Object aObject) { - return aObject.getClass().isArray(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/HeatMapLegend.java b/core/src/main/java/org/mskcc/cbio/portal/util/HeatMapLegend.java deleted file mode 100644 index 70941eb3e1f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/HeatMapLegend.java +++ /dev/null @@ -1,207 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.ArrayList; - -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticDataTypes; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticTypeLevel; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintGeneDisplaySpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ResultDataTypeSpec; - -/** - * - * @author Arthur Goldberg - * - */ -public class HeatMapLegend { - - static ArrayList CNAlevels; - static ArrayList MutationLevels; - static ArrayList ExpressionLevels; - static ArrayList RPPALevels; - static ArrayList Alterations; - - static ArrayList> allColumns; - static StringBuffer sb; - - /** - * Output the Heat Map html legend, listing only genetic alterations that are - * selected by the OncoSpec. - *

    - * TODO: unit test - * @param allPossibleAlterations - * @return - */ - static public String outputHeatMapLegend( OncoPrintGeneDisplaySpec allPossibleAlterations) { - /* - * Three columns: CNA, Mutation, mRNA regulation. Output column if any of - * it is selected; within a column, output all possible alternatives. - */ - CNAlevels = new ArrayList(); - MutationLevels = new ArrayList(); - ExpressionLevels = new ArrayList(); - RPPALevels = new ArrayList(); - Alterations = new ArrayList(); - - // CNA colors - if (allPossibleAlterations.satisfy(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Amplified)) { - CNAlevels.add("High-Level Amplification"); - } - - if (allPossibleAlterations.satisfy(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HomozygouslyDeleted)) { - CNAlevels.add("Homozygous Deletion"); - } - - if (allPossibleAlterations.satisfy(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Gained)) { - CNAlevels.add("Low-level Gain"); - } - - if (allPossibleAlterations.satisfy(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HemizygouslyDeleted)) { - CNAlevels.add("Heterozygous Deletion"); - } - - // mutations - if (allPossibleAlterations.satisfy(GeneticDataTypes.Mutation, GeneticTypeLevel.Mutated)) { - MutationLevels.add(" = Point Mutation"); - } - - // expression - // over - ResultDataTypeSpec theResultDataTypeSpec = allPossibleAlterations - .getResultDataTypeSpec(GeneticDataTypes.Expression); - if (null != theResultDataTypeSpec && (null != theResultDataTypeSpec.getCombinedGreaterContinuousDataTypeSpec())) { - ExpressionLevels.add(" = mRNA up-Regulation"); - } - - // under - theResultDataTypeSpec = allPossibleAlterations.getResultDataTypeSpec(GeneticDataTypes.Expression); - if (null != theResultDataTypeSpec && (null != theResultDataTypeSpec.getCombinedLesserContinuousDataTypeSpec())) { - ExpressionLevels.add(" = mRNA down-Regulation"); - } - - // RPPA - theResultDataTypeSpec = allPossibleAlterations - .getResultDataTypeSpec(GeneticDataTypes.RPPA); - if (null != theResultDataTypeSpec && (null != theResultDataTypeSpec.getCombinedGreaterContinuousDataTypeSpec())) { - RPPALevels.add(" = Protein up-Regulation"); - } - - // under - theResultDataTypeSpec = allPossibleAlterations.getResultDataTypeSpec(GeneticDataTypes.Expression); - if (null != theResultDataTypeSpec && (null != theResultDataTypeSpec.getCombinedLesserContinuousDataTypeSpec())) { - RPPALevels.add(" = Protein down-Regulation"); - } - - // column headers - if (0 < CNAlevels.size()) { - CNAlevels.add(0, "Putative Copy Number Alteration"); - } - if (0 < MutationLevels.size()) { - MutationLevels.add(0, "Point Mutation"); - } - if (0 < ExpressionLevels.size()) { - ExpressionLevels.add(0, "Gene Expression"); - } - if (0 < RPPALevels.size()) { - RPPALevels.add(0, "Protein Level"); - } - - // Alterations - Alterations.add("Gene Set"); - Alterations.add(" = At least one gene in set is altered in case"); - - allColumns = new ArrayList>(); - allColumns.add(CNAlevels); - allColumns.add(MutationLevels); - allColumns.add(ExpressionLevels); - allColumns.add(RPPALevels); - allColumns.add(Alterations); - - sb = new StringBuffer(); - appendLine( sb, ""); - - boolean[] columnUsed = outputHeadings(sb, allColumns); - while (levelsRemaining(allColumns)) { - outputNextRow(sb, allColumns, columnUsed); - } - - appendLine( sb, "
    "); - return sb.toString(); - } - - static private boolean[] outputHeadings( StringBuffer sb, ArrayList> allColumns) { - boolean[] rv = new boolean[allColumns.size()]; - int i = 0; - appendLine( sb, ""); - for (ArrayList col : allColumns) { - if (0 < col.size()) { - rv[i] = true; - appendLine( sb, col.remove(0)); - } - i++; - } - appendLine( sb, ""); - return rv; - } - - static private boolean levelsRemaining(ArrayList> allColumns) { - for (ArrayList col : allColumns) { - if (0 < col.size()) { - return true; - } - } - return false; - } - - static private void outputNextRow( StringBuffer sb, ArrayList> allColumns, boolean[] columnUsed) { - int i = 0; - appendLine( sb, ""); - for (ArrayList col : allColumns) { - if (0 < col.size()) { - appendLine( sb, col.remove(0)); - } else { - if (columnUsed[i]) { - appendLine( sb, ""); - } - } - i++; - } - appendLine( sb, ""); - } - - static private void appendLine( StringBuffer sb, String s ){ - sb.append(s).append("\n"); - } - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/IGVLinking.java b/core/src/main/java/org/mskcc/cbio/portal/util/IGVLinking.java deleted file mode 100644 index eb9008c9fd7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/IGVLinking.java +++ /dev/null @@ -1,367 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.web_api.ConnectionManager; - -import org.apache.commons.io.*; - -import org.apache.commons.httpclient.*; -import org.apache.commons.httpclient.methods.*; - -import java.text.SimpleDateFormat; -import java.util.Calendar; -import java.io.File; -import java.net.*; - -/** - * Provides methods for linking to IGV. - * - * @author Benjamin Gross. - */ -public class IGVLinking { - - private static final String TOKEN_REGEX = ""; - private static final String SAMPLE_REGEX = ""; - private static final String KNOWN_ID = "KNOWN_ID"; - private static final String TUMOR_BAM_SIGNATURE = "-Tumor"; - private static final String NORMAL_BAM_SIGNATURE = "-Normal"; - - public static String[] getIGVArgsForSegViewing(String cancerStudyStableId, String encodedGeneList) throws Exception - { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId); - CopyNumberSegmentFile cnsf = DaoCopyNumberSegmentFile.getCopyNumberSegmentFile(cancerStudy.getInternalId()); - - return new String[] { GlobalProperties.getSegfileUrl() + cnsf.filename, encodedGeneList, cnsf.referenceGenomeId.toString(), cnsf.filename }; - } - - // returns null if exception has been thrown during processing - public static String[] getIGVArgsForBAMViewing(String cancerStudyStableId, String caseId, String locus) - { - if (!IGVLinking.validBAMViewingArgs(cancerStudyStableId, caseId, locus) || - !IGVLinking.encryptionBinLocated()) { - return null; - } - - String trackName = caseId; - - String tumorBAMFileURL = getBAMFileURL(caseId); - if (tumorBAMFileURL == null) return null; - - // code added to view normal alongside tumor file - String normalCaseId = getNormalSampleId(caseId); - if (normalCaseId != null) { - String normalBAMFileURL = getBAMFileURL(normalCaseId); - if (normalBAMFileURL != null) { - tumorBAMFileURL += "," + normalBAMFileURL; - trackName += "," + normalCaseId; - } - } - - String encodedLocus = getEncoded(locus); - if (encodedLocus == null) return null; - - return new String[] { tumorBAMFileURL, encodedLocus, CopyNumberSegmentFile.ReferenceGenomeId.hg19.toString(), trackName }; - } - - public static boolean validBAMViewingArgs(String cancerStudy, String caseId, String locus) - { - return (caseId != null && caseId.length() > 0 && - locus != null && locus.length() > 0 && - cancerStudy != null && cancerStudy.length() > 0 && - bamExists(cancerStudy, caseId)); - } - - public static boolean bamExists(String cancerStudy, String caseId) - { - return GlobalProperties.getIGVBAMLinkingStudies().contains(cancerStudy) && knownCaseId(caseId); - } - - private static boolean encryptionBinLocated() - { - return new File(GlobalProperties.getProperty(GlobalProperties.OPENSSL_BINARY)).exists(); - } - - private static String getBAMFileURL(String caseId) - { - String token = IGVLinking.getToken(caseId); - return (token == null) ? null : - GlobalProperties.getProperty(GlobalProperties.BROAD_BAM_URL).replace(TOKEN_REGEX, token); - } - - private static String getToken(String caseId) - { - File messageToEncrypt = null; - File token = null; - String urlEncodedToken = null; - - try { - messageToEncrypt = getMessageToEncrypt(caseId, IGVLinking.getCurrentTime()); - token = IGVLinking.encrypt(messageToEncrypt); - urlEncodedToken = IGVLinking.getURLEncodedToken(token); - } - catch (Exception e) { - urlEncodedToken = null; - } - finally { - FileUtils.deleteQuietly(messageToEncrypt); - FileUtils.deleteQuietly(token); - } - - return urlEncodedToken; - } - - private static String getCurrentTime() - { - return Long.toString(Calendar.getInstance().getTime().getTime()); - } - - private static File getMessageToEncrypt(String caseId, String timestamp) throws Exception - { - File token = FileUtils.getFile(FileUtils.getTempDirectoryPath(), "broad-bam-token.txt"); - FileUtils.writeStringToFile(token, timestamp + " " + caseId, "UTF-8", false); - return token; - } - - private static String getURLEncodedToken(File token) throws Exception - { - return URLEncoder.encode(IGVLinking.getFileContents(token), "US-ASCII"); - } - - private static String getFileContents(File file) throws Exception - { - StringBuilder sb = new StringBuilder(); - LineIterator it = null; - - try { - it = FileUtils.lineIterator(file, "UTF-8"); - while (it.hasNext()) { - sb.append(it.nextLine()); - } - } - finally { - if (it != null) it.close(); - } - - return sb.toString(); - } - - private static String getEncoded(String toEncode) - { - String encoded = null; - try { - encoded = URLEncoder.encode(toEncode, "US-ASCII"); - } - catch(Exception e){} - - return encoded; - } - - private static File encrypt(File messageToEncrypt) throws Exception - { - - File encryptedMessage = null; - File signedMessage = null; - File base64Message = null; - - try { - encryptedMessage = IGVLinking.getEncryptedMessage(messageToEncrypt); - signedMessage = IGVLinking.getSignedMessage(encryptedMessage); - base64Message = IGVLinking.getBase64Message(signedMessage); - } - catch (Exception e) { - FileUtils.deleteQuietly(base64Message); - throw e; - } - finally { - FileUtils.deleteQuietly(encryptedMessage); - FileUtils.deleteQuietly(signedMessage); - } - - return base64Message; - } - - private static File getEncryptedMessage(File messageToEncrypt) throws Exception - { - File encryptedMessage = null; - - try { - encryptedMessage = FileUtils.getFile(FileUtils.getTempDirectoryPath(), "broad-bam-encrypted.txt"); - IGVLinking.execute(IGVLinking.getEncryptCommand(messageToEncrypt, encryptedMessage)); - } - catch (Exception e) { - FileUtils.deleteQuietly(encryptedMessage); - throw e; - } - - return encryptedMessage; - } - - private static String getEncryptCommand(File messageToEncrypt, File encryptedMessage) throws Exception - { - return (GlobalProperties.getProperty(GlobalProperties.OPENSSL_BINARY) + - " rsautl -encrypt" + - " -inkey " + GlobalProperties.getProperty(GlobalProperties.ENCRYPTION_KEY) + - " -keyform PEM -pubin" + - " -in " + messageToEncrypt.getCanonicalPath() + - " -out " + encryptedMessage.getCanonicalPath()); - } - - private static File getSignedMessage(File encryptedMessage) throws Exception - { - File signedMessage = null; - - try { - signedMessage = FileUtils.getFile(FileUtils.getTempDirectoryPath(), "broad-bam-signed-encrypted.txt"); - IGVLinking.execute(IGVLinking.getSignCommand(encryptedMessage, signedMessage)); - } - catch (Exception e) { - FileUtils.deleteQuietly(signedMessage); - throw e; - } - - return signedMessage; - } - - private static String getSignCommand(File encryptedMessage, File signedMessage) throws Exception - { - return (GlobalProperties.getProperty(GlobalProperties.OPENSSL_BINARY) + - " rsautl -sign" + - " -inkey " + GlobalProperties.getProperty(GlobalProperties.SIGNATURE_KEY) + - " -keyform PEM" + - " -in " + encryptedMessage.getCanonicalPath() + - " -out " + signedMessage.getCanonicalPath()); - } - - private static File getBase64Message(File signedMessage) throws Exception - { - File base64Message = null; - - try { - base64Message = FileUtils.getFile(FileUtils.getTempDirectoryPath(), "broad-bam-base64-signed-encrypted.txt"); - IGVLinking.execute(IGVLinking.getBase64Command(signedMessage, base64Message)); - } - catch (Exception e) { - FileUtils.deleteQuietly(base64Message); - throw e; - } - - return base64Message; - } - - private static String getBase64Command(File signedMessage, File base64Message) throws Exception - { - return (GlobalProperties.getProperty(GlobalProperties.OPENSSL_BINARY) + - " enc -base64" + - " -in " + signedMessage.getCanonicalPath() + - " -out " + base64Message.getCanonicalPath()); - } - - private static void execute(String command) throws Exception - { - Process process = Runtime.getRuntime().exec(command); - process.waitFor(); - if (process.exitValue() != 0) throw new RuntimeException(); - } - - private static boolean knownCaseId(String caseId) - { - String url = getBAMCheckingURL(caseId); - if (url == null) return false; - - HttpClient client = getHttpClient(); - GetMethod method = new GetMethod(url); - - try { - if (client.executeMethod(method) == HttpStatus.SC_OK) { - return processSampleIdCheckResult(method.getResponseBodyAsString()); - } - } - catch (Exception e) {} - finally { - method.releaseConnection(); - } - - return false; - } - - private static String getBAMCheckingURL(String caseId) - { - String encodedCaseId = getEncoded(caseId); - String url = GlobalProperties.getProperty(GlobalProperties.BROAD_BAM_CHECKING_URL); - return (url != null && !url.isEmpty() && encodedCaseId != null) ? - url.replace(SAMPLE_REGEX, encodedCaseId) : null; - } - - private static HttpClient getHttpClient() - { - MultiThreadedHttpConnectionManager connectionManager = - ConnectionManager.getConnectionManager(); - return new HttpClient(connectionManager); - } - - private static boolean processSampleIdCheckResult(String responseBody) - { - return (responseBody.equalsIgnoreCase(KNOWN_ID)); - } - - private static String getNormalSampleId(String tumorSampleId) - { - // most normal id's are simply the tumorSampleId with "Normal" replaced with "Tumor" - String normalId = tumorSampleId.replace(TUMOR_BAM_SIGNATURE, NORMAL_BAM_SIGNATURE); - if (knownCaseId(normalId)) return normalId; - - // in some cases, we need to truncate everything - // following & including "Tumor" and replace with "Normal" - String tumorSampleIdPrefix = getTumorSampleIdPrefix(tumorSampleId); - if (tumorSampleIdPrefix != null) { - String encodedTumorSampleId = getEncoded(tumorSampleIdPrefix + - NORMAL_BAM_SIGNATURE); - if (encodedTumorSampleId != null && - knownCaseId(encodedTumorSampleId)) { - return tumorSampleIdPrefix + NORMAL_BAM_SIGNATURE; - } - } - - return null; - } - - private static String getTumorSampleIdPrefix(String tumorSampleId) - { - int tumorSignatureIndex = tumorSampleId.indexOf(TUMOR_BAM_SIGNATURE); - return (tumorSignatureIndex > 0) ? - tumorSampleId.substring(0, tumorSignatureIndex) : null; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/InternalIdUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/InternalIdUtil.java deleted file mode 100644 index 580c570778c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/InternalIdUtil.java +++ /dev/null @@ -1,148 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import java.util.*; - -public class InternalIdUtil -{ - public static List getStableSampleIds(List internalSampleIds) - { - List sampleIds = new ArrayList(); - for (Integer internalSampleId : internalSampleIds) { - Sample s = DaoSample.getSampleById(internalSampleId); - sampleIds.add(s.getStableId()); - } - return sampleIds; - } - - public static List getInternalPatientIds(int cancerStudyId) { - List patientIds = new ArrayList(); - for (Patient patient : DaoPatient.getPatientsByCancerStudyId(cancerStudyId)) { - patientIds.add(patient.getInternalId()); - } - return patientIds; - } - - public static List getInternalNonNormalSampleIds(int cancerStudyId) - { - List sampleIds = new ArrayList(); - List samples = DaoSample.getSamplesByCancerStudy(cancerStudyId); - for (Sample sample : samples) { - sampleIds.add(sample.getInternalId()); - } - return sampleIds; - } - - public static List getInternalNonNormalSampleIds(int cancerStudyId, List stableSampleIds) - { - List sampleIds = new ArrayList(); - for (String sampleId : stableSampleIds) { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId); - if (Sample.Type.normalTypes().contains(sample.getType())) { - continue; - } - sampleIds.add(sample.getInternalId()); - } - return sampleIds; - } - - public static List getInternalSampleIds(int cancerStudyId, List stableSampleIds) - { - ArrayList sampleIds = new ArrayList(); - for (String sampleId : stableSampleIds) { - if (DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId) != null) { - Sample s = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId); - sampleIds.add(s.getInternalId()); - } - } - return sampleIds; - } - - public static List getInternalNonNormalSampleIdsFromPatientIds(int cancerStudyId, List stablePatientIds) - { - return getInternalSampleIdsFromPatientIds(cancerStudyId, stablePatientIds, Sample.Type.normalTypes()); - } - - public static List getInternalSampleIdsFromPatientIds(int cancerStudyId, List stablePatientIds, Set excludes) - { - List sampleIds = new ArrayList(); - for (String patientId : stablePatientIds) { - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudyId, patientId); - for (Sample sample : DaoSample.getSamplesByPatientId(patient.getInternalId())) { - if (excludes.contains(sample.getType())) { - continue; - } - sampleIds.add(sample.getInternalId()); - } - } - return sampleIds; - } - - - public static List getSamplesById(Collection sampleIds) { - List samples = new ArrayList(); - for (int id : sampleIds) { - Sample sample = DaoSample.getSampleById(id); - if (sample!=null) { - samples.add(sample); - } - } - return samples; - } - - public static List getPatientsById(Collection patientIds) { - List patients = new ArrayList(); - for (int id : patientIds) { - Patient patient = DaoPatient.getPatientById(id); - if (patient!=null) { - patients.add(patient); - } - } - return patients; - } - - public static List getStablePatientIdsFromSampleIds(int cancerStudyId, List stableSampleIds) - { - Set patientIds = new HashSet(); - for (String sampleId : stableSampleIds) { - Sample s = DaoSample.getSampleByCancerStudyAndSampleId(cancerStudyId, sampleId); - Patient p = DaoPatient.getPatientById(s.getInternalPatientId()); - patientIds.add(p.getStableId()); - } - return new ArrayList(patientIds); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/Logger.java b/core/src/main/java/org/mskcc/cbio/portal/util/Logger.java deleted file mode 100644 index 8282d75ad4a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/Logger.java +++ /dev/null @@ -1,49 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -/** - * Class which provides logging facility. - * This comment added to satisfy checkstyle warning. - * Now that I am looking at class, I wonder why it is needed - * since we use log4j. -B - */ -public class Logger { - private static boolean log = false; - - public static void log (String msg) { - if (log) { - System.out.println (msg); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/MissingValues.java b/core/src/main/java/org/mskcc/cbio/portal/util/MissingValues.java deleted file mode 100644 index d52dad8ef4a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/MissingValues.java +++ /dev/null @@ -1,39 +0,0 @@ -package org.mskcc.cbio.portal.util; - -public enum MissingValues { - NOT_APPLICABLE("Not Applicable"), - NOT_AVAILABLE("Not Available"), - PENDING("Pending"), - DISCREPANCY("Discrepancy"), - COMPLETED("Completed"), - NULL("null"), MISSING(""), - NA("NA"); - - private String propertyName; - - MissingValues(String propertyName) { - this.propertyName = propertyName; - } - - public String toString() { - return propertyName; - } - - static public boolean has(String value) { - if (value == null) - return false; - if (value.trim().equals("")) - return true; - try { - value = value.replaceAll("[\\[|\\]]", ""); - value = value.replaceAll(" ", "_"); - return valueOf(value.toUpperCase()) != null; - } catch (IllegalArgumentException x) { - return false; - } - } - - static public String getNotAvailable() { - return "[" + NOT_AVAILABLE.toString() + "]"; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/MskWholeSlideViewerTokenGenerator.java b/core/src/main/java/org/mskcc/cbio/portal/util/MskWholeSlideViewerTokenGenerator.java deleted file mode 100644 index 6bb565c1452..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/MskWholeSlideViewerTokenGenerator.java +++ /dev/null @@ -1,36 +0,0 @@ - -package org.mskcc.cbio.portal.util; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import javax.crypto.Mac; -import javax.crypto.spec.SecretKeySpec; -import org.apache.commons.codec.binary.Base64; - -public class MskWholeSlideViewerTokenGenerator { - // ~ Static fields - // ======================================================================================================== - - private static Logger LOG = LoggerFactory.getLogger(MskWholeSlideViewerTokenGenerator.class); - private static final String PORTAL_NAME = "cbioportal"; - - // ~ Methods - // ======================================================================================================== - - public static String generateTokenByHmacSHA256(String username, String secretKey, String timeStamp) { - try { - String message = PORTAL_NAME + "?" + "user=" + username + "&t=" + timeStamp; - - Mac sha256_HMAC = Mac.getInstance("HmacSHA256"); - SecretKeySpec secret_key = new SecretKeySpec(secretKey.getBytes(), "HmacSHA256"); - sha256_HMAC.init(secret_key); - String hash = Base64.encodeBase64String(sha256_HMAC.doFinal(message.getBytes())); - return hash; - } - catch (Exception e) { - if (LOG.isErrorEnabled()) { - LOG.error("Error generate msk Whole slide viewer token: " + e.getMessage()); - } - return null; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/MutSigReader.java b/core/src/main/java/org/mskcc/cbio/portal/util/MutSigReader.java deleted file mode 100644 index b846edee970..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/MutSigReader.java +++ /dev/null @@ -1,196 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.MySQLbulkLoader; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.MutSig; - -import java.io.*; - -import static org.mskcc.cbio.portal.dao.DaoMutSig.addMutSig; - -/* - * Reads and loads a MutSig file. - * Requires a "properties" file for the Cancer Study associated with the MutSig file. - - * @author Lennart Bastian - * @author Gideon Dresdner - * - */ - -public class MutSigReader { - public static final int HIGH_Q_VALUE = -1; - - /** - * Adds MutSigs to CDGS database. - * @param internalId CancerStudy database record - * @param mutSigFile MutSigFile - * @return number of MutSig records loaded - * @throws IOException - * @throws DaoException - */ - public static int loadMutSig(int internalId, File mutSigFile) throws IOException, DaoException { - int loadedMutSigs = 0; - MySQLbulkLoader.bulkLoadOff(); - FileReader reader = new FileReader(mutSigFile); - BufferedReader buf = new BufferedReader(reader); - try { - // parse field names of a mutsig data file - int rankField = -1; - int hugoField = -1; - int BasesCoveredField = -1; - int numMutationsField = -1; - int PvalField = -1; - int QvalField = -1; - - String head = buf.readLine(); - String[] names = head.split("\t"); - int len = names.length; - for (int i = 0; i < len ; i++) - { - if (names[i].equals("rank")) { - rankField = i; - } else if (names[i].equalsIgnoreCase("gene")) { - hugoField = i; - } else if (names[i].equals("N") || names[i].equals("Nnon") ) { - BasesCoveredField = i; - } else if (names[i].equals("n") || names[i].equals("nnon") ) { - numMutationsField = i; - } else if (names[i].equalsIgnoreCase("p")) { - PvalField = i; - } else if (names[i].equalsIgnoreCase("q") || names[i].equalsIgnoreCase("q\n")) { - QvalField = i; - } - } - // end parse Column names - - // check to see if all fields are filled - if (hugoField == -1 - || BasesCoveredField == -1 - || numMutationsField == -1 - || PvalField == -1 - || QvalField == -1) { - throw new IOException("one or more of the fields [rank, hugoGeneSymbol, number of bases covered (N), " + - "number of mutations (n), p-value, q-value] are undefined"); - } - - // parse data - int rank = 0; - for (String line = buf.readLine();line != null;line = buf.readLine()) { - - ProgressMonitor.incrementCurValue(); - ConsoleUtil.showProgress(); - - MutSig mutSig = new MutSig(); - mutSig.setCancerType(internalId); - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - String[] parts = line.split("\t"); - - // -- load parameters for new MutSig object -- - try { - if (rankField==-1) { // MutSigCV - rank++; - } else { - rank = Integer.parseInt(parts[rankField]); - } - mutSig.setRank(rank); - } catch (java.lang.NumberFormatException e) { - //should not occur anymore: - throw e; - } - - String hugoGeneSymbol = parts[hugoField]; - - try { - int numBasesCovered = Integer.parseInt(parts[BasesCoveredField]); - mutSig.setNumBasesCovered(numBasesCovered); - } catch (java.lang.NumberFormatException e) { - //should not occur anymore: - throw e; - } - - try { - int numMutations = Integer.parseInt(parts[numMutationsField]); - mutSig.setNumMutations(numMutations); - } catch (java.lang.NumberFormatException e) { - //should not occur anymore: - throw e; - } - - // ignoring '<' sign - try { - float pValue = Float.valueOf(parts[PvalField].replace("<", "")); - mutSig.setpValue(pValue); - } catch (java.lang.NumberFormatException e) { - //should not occur anymore: - throw e; - } - - try { - float qValue = Float.valueOf(parts[QvalField].replace("<", "")); - // Ignore everything with high q-value, - // specified by Ethan - if (qValue >= 0.1) { - ProgressMonitor.logWarning("Filtered out item with qValue >= 0.1"); //Because this message is static, it will be grouped and shown only once if it occurs many times - continue; - } - mutSig.setqValue(qValue); - } catch (java.lang.NumberFormatException e) { - //should not occur anymore: - throw e; - } - - CanonicalGene gene = daoGene.getNonAmbiguousGene(hugoGeneSymbol); - if (gene==null) { - ProgressMonitor.logWarning("Gene " + gene + " not found or was ambiguous. Skipping this gene."); - continue; - } - mutSig.setCanonicalGene(gene); - - // -- end load parameters for new MutSig object -- - - loadedMutSigs += addMutSig(mutSig); - - } - return loadedMutSigs; - } - finally { - buf.close(); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/MutationCounter.java b/core/src/main/java/org/mskcc/cbio/portal/util/MutationCounter.java deleted file mode 100644 index 9b70f4f47c7..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/MutationCounter.java +++ /dev/null @@ -1,146 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.ExtendedMutationMap; -import org.mskcc.cbio.portal.model.ExtendedMutation; - -import java.util.ArrayList; -import java.text.DecimalFormat; - -/** - * Calculates Somatic and Germline Mutation Frequency. - * - * @author Ethan Cerami. - */ -public class MutationCounter { - private int numSamplesWithSomaticMutation = 0; - private int numSamplesWithGermlineMutation = 0; - private int numSamplesWithMutation = 0; - private ExtendedMutationMap mutationMap; - private String gene; - - private int totalNumSamples; - - public MutationCounter (String gene, ExtendedMutationMap mutationMap) { - this.gene = gene; - this.mutationMap = mutationMap; - totalNumSamples = mutationMap.getSampleList().size(); - for (Integer sampleId: mutationMap.getSampleList()) { - if (sampleIsMutated(sampleId)) { - numSamplesWithMutation++; - MutationStatus mutationStatus = getMutationStatus(sampleId); - incrementCounters(mutationStatus); - } - } - } - - public String getTextSummary() { - StringBuffer summary = new StringBuffer(); - DecimalFormat percentFormat = new DecimalFormat("###,###.#%"); - summary.append("["); - if (getGermlineMutationRate() > 0) { - summary.append("Germline Mutation Rate: "); - summary.append(percentFormat.format(getGermlineMutationRate())); - summary.append(", "); - } - summary.append("Somatic Mutation Rate: "); - summary.append(percentFormat.format(getSomaticMutationRate())); - summary.append("]"); - return summary.toString(); - } - - public double getSomaticMutationRate() { - return numSamplesWithSomaticMutation / (float) totalNumSamples; - } - - public double getGermlineMutationRate() { - return numSamplesWithGermlineMutation / (float) totalNumSamples; - } - - public double getMutationRate() { - return numSamplesWithMutation / (float) totalNumSamples; - } - - private void incrementCounters(MutationStatus mutationStatus) { - if (mutationStatus.isSampleGermlineMutated()) { - numSamplesWithGermlineMutation++; - } - if (mutationStatus.isSampleSomaticallyMutated()) { - numSamplesWithSomaticMutation++; - } - } - - private boolean sampleIsMutated(Integer sampleId) { - ArrayList mutationList = mutationMap.getExtendedMutations(gene, sampleId); - return mutationList != null && mutationList.size() > 0; - } - - private MutationStatus getMutationStatus(Integer sampleId) { - ArrayList mutationList = mutationMap.getExtendedMutations(gene, sampleId); - MutationStatus mutationStatus = new MutationStatus(); - for (ExtendedMutation mutation: mutationList) { - setMutationStatus(mutation, mutationStatus); - } - return mutationStatus; - } - - private void setMutationStatus(ExtendedMutation mutation, MutationStatus mutationStatus) { - if (mutation.isGermlineMutation()) { - mutationStatus.setGermlineMutated(true); - } else { - mutationStatus.setSomaticMutated(true); - } - } -} - -class MutationStatus { - private boolean germlineMutated; - private boolean somaticMutated; - - public boolean isSampleGermlineMutated() { - return germlineMutated; - } - - public void setGermlineMutated(boolean germlineMutated) { - this.germlineMutated = germlineMutated; - } - - public boolean isSampleSomaticallyMutated() { - return somaticMutated; - } - - public void setSomaticMutated(boolean somaticMutated) { - this.somaticMutated = somaticMutated; - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/MutationKeywordUtils.java b/core/src/main/java/org/mskcc/cbio/portal/util/MutationKeywordUtils.java deleted file mode 100644 index 748136e5e11..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/MutationKeywordUtils.java +++ /dev/null @@ -1,266 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -/** - * - * @author jgao - */ -public final class MutationKeywordUtils { - private MutationKeywordUtils() {} - - public static String guessOncotatorMutationKeyword(String aminoAcidChange, String mutationType) { - if (mutationType.equals("Nonsense_Mutation") || - mutationType.equals("Splice_Site") || - mutationType.startsWith("Frame_Shift_") || - mutationType.equals("Nonstop_Mutation") || - mutationType.equals("Translation_Start_Site")) { - return "truncating"; - } - - if (mutationType.equals("Missense_Mutation")) { - if (aminoAcidChange.matches("M1[A-LN-Z][A-Z]*")) { // how about indels on the first position? - // non-start - return "truncating"; - } - - Pattern p = Pattern.compile("([A-Z][0-9]+)[A-Z]"); - Matcher m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1) + " missense"; - } - - p = Pattern.compile("([0-9]+)_([0-9]+)[A-Z]+>[A-Z]+"); - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1) + "-" + m.group(2) + " missense"; - } - } - - if (mutationType.equals("In_Frame_Ins")) { - if (aminoAcidChange.matches("[0-9]+_[0-9]+[A-Z]*((ins)|(>)).*\\*.*")) { - // insertion of * - return "truncating"; - } - - if (aminoAcidChange.matches("1_1M>?[A-LN-Z][A-Z]*") - || aminoAcidChange.matches("1_2ins[A-LN-Z][A-Z]*")) {// insertion in the start position - return "truncating"; - } - - Pattern p = Pattern.compile("([0-9]+)_([0-9]+)[A-Z]*((ins)|(>))[A-Z]+"); - Matcher m = p.matcher(aminoAcidChange); - if (m.find()) { - return "" + m.group(1) + " insertion"; - } - } - - if (mutationType.equals("In_Frame_Del")) { - if (aminoAcidChange.matches("M[A-Z]*1del") - || aminoAcidChange.matches("1_[0-9]+M[A-Z]*>[A-LN-Z][A-Z]*")) { - // deletion of M1 - return "truncating"; - } - - if (aminoAcidChange.matches("[A-Z]*\\*[0-9]+del") - || aminoAcidChange.matches("[0-9]+_[0-9]+[A-Z]*\\*>[A-Z]+")) { - // deletion of * - return "truncating"; - } - - if (aminoAcidChange.matches("[0-9]+_[0-9]+[A-Z]*>.*\\*.*")) { - // deletion of * - return "truncating"; - } - - // only the first deleted residue was considered - Pattern p = Pattern.compile("([A-Z]+)([0-9]+)del"); - Matcher m = p.matcher(aminoAcidChange); - if (m.matches()) { - return "" + m.group(2) + "-" + (Integer.parseInt(m.group(2))+m.group(1).length()-1) + " deletion"; - } - - p = Pattern.compile("([0-9]+)_([0-9]+)[A-Z]*>[A-Z]+"); - m = p.matcher(aminoAcidChange); - if (m.find()) { - return m.group(1) + "-" + m.group(2) + " deletion"; - } - } - - if (mutationType.equals("Silent")) { - Pattern p = Pattern.compile("([0-9]+)"); - Matcher m = p.matcher(aminoAcidChange); - if (m.find()) { - return "" + m.group(1) + "silent"; - } - } - - if (mutationType.equals("Exon skipping") - || mutationType.equals("vIII deletion")) { - return aminoAcidChange; - } - - if (mutationType.equals("NA")) { - return guessCosmicKeyword(aminoAcidChange); - } - - // how about RNA or Translation_Start_Site - - return null; - } - - /** - * - * @param hugo - * @param aminoAcidChange - * @param cds - * @return - */ - public static String guessCosmicKeyword(String aminoAcidChange) { - if (aminoAcidChange.matches("\\(?[A-Z\\*]?[0-9]+[A-Z\\*]?\\)?fs\\*?>?\\??[0-9]*") // frameshift - || aminoAcidChange.equals("?fs") // frameshift - || aminoAcidChange.matches("[A-Z][0-9]+>?\\*") // non sense - || aminoAcidChange.matches("M1>?[A-LN-Z]") // non start - || aminoAcidChange.matches("M1delM") // non start, deletion of M1 - || aminoAcidChange.matches("M1_M1ins[A-LN-Z][A-Z]*") // non start, insertion of non M at start - || aminoAcidChange.matches("([A-Z][0-9]+_)?\\*[0-9]+>?[A-Z]") // non stop - || aminoAcidChange.matches("([A-Z][0-9]+_)\\*[0-9]+del([A-Z]+\\*)?") // delete * - || aminoAcidChange.matches("\\*[0-9]+del\\*") // delete * - || aminoAcidChange.matches("[A-Z][0-9]+(_[A-Z][0-9]+)?((ins)|(>)).*\\*.*") // inserting a stop - || aminoAcidChange.matches("[A-Z][0-9]+_[A-Z][0-9]+>.*\\*.*") // repleacing/inserting/deletion a stop - || aminoAcidChange.matches("M1_[A-Z][0-9]+>[A-LN-Z][A-Z]*") // repleacing/inserting/deletion the first codon - ) { - return "truncating"; - } - - Pattern p = Pattern.compile("(([A-Z\\*])[0-9]+)>?((\\2)|(=)|(%3D))"); // cosmic encodes = as %3D - Matcher m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1)+" silent"; - } - - p = Pattern.compile("([A-Z]([0-9]+))>?([A-Z]+)"); - m = p.matcher(aminoAcidChange); - if (m.matches()) { - if (m.group(3).length()>1) { - return m.group(2)+" insertion"; - } - return m.group(1)+" missense"; - } - - p = Pattern.compile("[A-Z]?([0-9]+)_[A-Z\\*]?[0-9]+ins(([A-Z]+)|([0-9]+))"); //incl. ins before stop codon - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1)+" insertion"; - } - - p = Pattern.compile("\\*([0-9]+)[A-Z]?ext\\*(([0-9]+)|(\\?))"); //extension of stop codon - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1)+" insertion"; - } - - p = Pattern.compile("[A-Z*]([0-9]+)(_[A-Z*][0-9]+)?dup"); //duplication treated as insertion - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1)+" insertion"; - } - - p = Pattern.compile("[A-Z]?([0-9]+)>[A-Z][A-Z]+"); - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1)+" insertion"; - } - - p = Pattern.compile("\\*([0-9]+)_\\*[0-9]+ins[A-Z]+\\*?"); - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1)+" insertion"; - } - - p = Pattern.compile("[A-Z]([0-9]+)del[A-Z]?"); - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1) + "-" + m.group(1) + " deletion"; - } - - p = Pattern.compile("[A-Z]([0-9]+)_[A-Z]([0-9]+)del(([A-Z]+)|([0-9]+))?"); - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1) + "-" + m.group(2) + " deletion"; - } - - p = Pattern.compile("[A-Z]([0-9]+)_[A-Z*]([0-9]+)((>)|(delins))([A-Z*]+)"); // this is actually similar to missense mutation for more than 1 amino acid - m = p.matcher(aminoAcidChange); - if (m.matches()) { - int n1 = Integer.parseInt(m.group(2)) - Integer.parseInt(m.group(1)) + 1; - int n2 = m.group(6).length(); - if (n1==n2) { - return m.group(1) + "-" + m.group(2) + " missense"; - } - - if (n1 > n2) { - return m.group(1) + "-" + m.group(2) + " deletion"; - } - - return m.group(1) + " insertion"; - } - - p = Pattern.compile("[A-Z*]([0-9]+)delins[A-Z*]+[0-9]*"); //delins with 1 del & >1 ins - m = p.matcher(aminoAcidChange); - if (m.matches()) { - return m.group(1)+" insertion"; - } - - p = Pattern.compile("([A-Z*]+)([0-9]+)delext\\*([0-9]+)"); //delext - m = p.matcher(aminoAcidChange); - if (m.matches()) { - int n1 = m.group(1).length(); // no. of AA deleted - int n2 = Integer.parseInt(m.group(3)); // no. of AA added - int n3 = Integer.parseInt(m.group(2)); // location of AA1 - if (n1==n2) { - return m.group(2) + "-" + Integer.toString(n3 + n2 - 1) + " missense"; - } - - if (n1 < n2) { - return m.group(2) + " insertion"; - } - } - - return null; - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/MyCancerGenomeLinkUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/MyCancerGenomeLinkUtil.java deleted file mode 100644 index e1c035e16c9..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/MyCancerGenomeLinkUtil.java +++ /dev/null @@ -1,137 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ -package org.mskcc.cbio.portal.util; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.net.URL; -import java.util.ArrayList; -import java.util.Collections; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; -import java.util.TreeMap; -import java.util.logging.Level; -import java.util.logging.Logger; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import javax.net.ssl.HttpsURLConnection; -import org.apache.commons.text.StringEscapeUtils; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; - -/** - * - * @author jgao - */ -public final class MyCancerGenomeLinkUtil { - private MyCancerGenomeLinkUtil() {} - private final static Map>> LINK_MAP - = new HashMap>>(); - - static { - if (GlobalProperties.showMyCancerGenomeUrl()) { - setMyCancerGenomeLinkFromLocal(); - } - - } - - /** - * - * @param gene - * @param alteration - * @return - */ - public static List getMyCancerGenomeLinks(String gene, String alteration, boolean includeGeneralMutation) throws IOException { - List list = new ArrayList(); - - boolean showMyCancerGenomeUrl = GlobalProperties.showMyCancerGenomeUrl(); - if(showMyCancerGenomeUrl) { - Map> mapVariantCancerLink = LINK_MAP.get(gene); - if (mapVariantCancerLink != null) { - Map mapCancerLink = mapVariantCancerLink.get(alteration); - if (mapCancerLink != null) { - list.addAll(mapCancerLink.values()); - } - - if (includeGeneralMutation) { - mapCancerLink = mapVariantCancerLink.get("mutation"); - if (mapCancerLink != null) { - list.addAll(mapCancerLink.values()); - } - } - } - } - return list; - } - - private static final String MYCANCERGENOME_FILE = "/mycancergenome.txt"; - private static void setMyCancerGenomeLinkFromLocal() { - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - try (BufferedReader in = new BufferedReader( - new InputStreamReader(MyCancerGenomeLinkUtil.class.getResourceAsStream(MYCANCERGENOME_FILE)))) { - String line; - while ((line=in.readLine())!=null && line.startsWith("#")) {} - - for (; line!=null; line=in.readLine()) { - String[] parts = line.trim().split("\t",-1); - if (parts.length<4) { - continue; - } - - CanonicalGene gene = daoGeneOptimized.getNonAmbiguousGene(parts[0]); - if (gene!=null) { - String hugo = gene.getHugoGeneSymbolAllCaps(); - Map> mapVariantCancerLink = LINK_MAP.get(hugo); - if (mapVariantCancerLink == null) { - mapVariantCancerLink = new HashMap>(); - LINK_MAP.put(hugo, mapVariantCancerLink); - } - - Map mapCancerLink = mapVariantCancerLink.get(parts[1]); - if (mapCancerLink == null) { - mapCancerLink = new HashMap(); - mapVariantCancerLink.put(parts[1], mapCancerLink); - } - - mapCancerLink.put(parts[2], parts[3]); - } - } - } catch (IOException ex) { - ex.printStackTrace(); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/NaturalOrderComparator.java b/core/src/main/java/org/mskcc/cbio/portal/util/NaturalOrderComparator.java deleted file mode 100644 index 065082b69ab..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/NaturalOrderComparator.java +++ /dev/null @@ -1,166 +0,0 @@ -/* - NaturalOrderComparator.java -- Perform 'natural order' comparisons of strings in Java. - Copyright (C) 2003 by Pierre-Luc Paour - - Based on the C version by Martin Pool, of which this is more or less a straight conversion. - Copyright (C) 2000 by Martin Pool - - This software is provided 'as-is', without any express or implied - warranty. In no event will the authors be held liable for any damages - arising from the use of this software. - - Permission is granted to anyone to use this software for any purpose, - including commercial applications, and to alter it and redistribute it - freely, subject to the following restrictions: - - 1. The origin of this software must not be misrepresented; you must not - claim that you wrote the original software. If you use this software - in a product, an acknowledgment in the product documentation would be - appreciated but is not required. - 2. Altered source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - 3. This notice may not be removed or altered from any source distribution. - */ -package org.mskcc.cbio.portal.util; - -import java.util.*; - -public class NaturalOrderComparator implements Comparator -{ - int compareRight(String a, String b) - { - int bias = 0; - int ia = 0; - int ib = 0; - - // The longest run of digits wins. That aside, the greatest - // value wins, but we can't know that it will until we've scanned - // both numbers to know that they have the same magnitude, so we - // remember it in BIAS. - for (;; ia++, ib++) - { - char ca = charAt(a, ia); - char cb = charAt(b, ib); - - if (!Character.isDigit(ca) && !Character.isDigit(cb)) - { - return bias; - } - else if (!Character.isDigit(ca)) - { - return -1; - } - else if (!Character.isDigit(cb)) - { - return +1; - } - else if (ca < cb) - { - if (bias == 0) - { - bias = -1; - } - } - else if (ca > cb) - { - if (bias == 0) - bias = +1; - } - else if (ca == 0 && cb == 0) - { - return bias; - } - } - } - - public int compare(Object o1, Object o2) - { - String a = o1.toString(); - String b = o2.toString(); - - int ia = 0, ib = 0; - int nza = 0, nzb = 0; - char ca, cb; - int result; - - while (true) - { - // only count the number of zeroes leading the last number compared - nza = nzb = 0; - - ca = charAt(a, ia); - cb = charAt(b, ib); - - // skip over leading spaces or zeros - while (Character.isSpaceChar(ca) || ca == '0') - { - if (ca == '0') - { - nza++; - } - else - { - // only count consecutive zeroes - nza = 0; - } - - ca = charAt(a, ++ia); - } - - while (Character.isSpaceChar(cb) || cb == '0') - { - if (cb == '0') - { - nzb++; - } - else - { - // only count consecutive zeroes - nzb = 0; - } - - cb = charAt(b, ++ib); - } - - // process run of digits - if (Character.isDigit(ca) && Character.isDigit(cb)) - { - if ((result = compareRight(a.substring(ia), b.substring(ib))) != 0) - { - return result; - } - } - - if (ca == 0 && cb == 0) - { - // The strings compare the same. Perhaps the caller - // will want to call strcmp to break the tie. - return nza - nzb; - } - - if (ca < cb) - { - return -1; - } - else if (ca > cb) - { - return +1; - } - - ++ia; - ++ib; - } - } - - static char charAt(String s, int i) - { - if (i >= s.length()) - { - return 0; - } - else - { - return s.charAt(i); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/OmaLinkUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/OmaLinkUtil.java deleted file mode 100644 index 92b0f8f7727..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/OmaLinkUtil.java +++ /dev/null @@ -1,166 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.net.URL; -import java.net.MalformedURLException; -import java.util.HashMap; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; - -/** - * Utility Class for Redirecting to the Online Mutation Assessor (OMA) Web Site. - * - * We redirect from the Portal to the OMA web site for two reasons: - * - * 1. To track usage, e.g. how many people actually click on links from the portal to OMA. - * 2. To address the security settings on the OMA web site, which prevent HTTP Referral URLs - * from containing new line characters, which frequently occurs within the gene set box. - * - * @author Ethan Cerami. - */ -public class OmaLinkUtil { - private final static String OMA_REDIRECT_LINK = "omaRedirect.do?"; - private final static String SITE_PARAM = "site"; - private final static ArrayList EMPTY_FIELD_MARKERS= new ArrayList(Arrays.asList("", "NA", "[Not Available]")); - - /** - * Creates a Redirect Link from Portal to OMA. - * - * Incoming links look like this: - * http://mutationassessor.org/?cm=var&var=17,7517830,G,C&fts=all - * - * Outgoing links look like this: - * omaRedirect.do?path=/&cm=var&var=17,7517830,G,C&fts=all - * - * @param omaUrl Incoming Link to OMA. - * @return Redirect Link from Portal to OMA. - * @throws MalformedURLException Malformed URL Error. - */ - public static String createOmaRedirectLink(String omaUrl) throws MalformedURLException { - if (EMPTY_FIELD_MARKERS.contains(omaUrl)) { - throw new MalformedURLException("value is empty field marker: " + omaUrl); - } - omaUrl = conditionallyPrependHttp(omaUrl); - URL url = new URL (omaUrl); - String site = url.getHost(); - String path = url.getPath(); - String query = url.getQuery(); - return OMA_REDIRECT_LINK + SITE_PARAM + "=" + site + path + "&" + query; - } - - /** - * Creates a Direct Link to the OMA Web Site. - * - * Incoming query string like this: - * path=/&cm=var&var=17,7517830,G,C&fts=all - * - * Outgoing links look like this: - * http://mutationassessor.org/?cm=var&var=17,7517830,G,C&fts=all - * - * @param omaQueryString OMA Query String. - * @return Direct Link to OMA Web Site. - * @throws MalformedURLException Malformed URL Error. - */ - public static String createOmaLink(String omaQueryString) throws MalformedURLException { - if (EMPTY_FIELD_MARKERS.contains(omaQueryString)) { - throw new MalformedURLException("value is empty field marker: " + omaQueryString); - } - omaQueryString = removePath(omaQueryString); - String params[] = omaQueryString.split("&"); - HashMap paramMap = getParameterMap(params); - String path = paramMap.get(SITE_PARAM); - ArrayList keyList = getKeyList(paramMap); - String queryString = createQueryString(keyList, paramMap); - return "http://" + path + "?" + queryString; - } - - public static boolean omaLinkIsValid(String omaQueryString) { - return !(omaQueryString == null || omaQueryString.length() == 0 || EMPTY_FIELD_MARKERS.contains(omaQueryString)); - } - - private static String conditionallyPrependHttp(String omaUrl) { - if (!omaUrl.startsWith("http://")) { - omaUrl = "http://" + omaUrl; - } - return omaUrl; - } - - private static String removePath(String omaQueryString) { - omaQueryString = omaQueryString.replaceAll(OMA_REDIRECT_LINK, ""); - if (omaQueryString.startsWith("?")) { - omaQueryString = omaQueryString.substring(1); - } - return omaQueryString; - } - - private static String createQueryString(ArrayList keyList, - HashMap paramMap) { - StringBuffer queryString = new StringBuffer(); - for (int i=0; i getParameterMap(String params[]) { - HashMap paramMap = new HashMap(); - for (String param : params) { - String parts[] = param.split("="); - paramMap.put(parts[0], parts[1]); - } - return paramMap; - } - - private static ArrayList getKeyList(HashMap paramMap) { - ArrayList keyList = new ArrayList(); - for (String currentKey: paramMap.keySet()) { - if (!currentKey.equals(SITE_PARAM)) { - keyList.add(currentKey); - } - } - Collections.sort(keyList); - return keyList; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/OncoPrintSpecificationDriver.java b/core/src/main/java/org/mskcc/cbio/portal/util/OncoPrintSpecificationDriver.java deleted file mode 100644 index ec2a8013a08..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/OncoPrintSpecificationDriver.java +++ /dev/null @@ -1,143 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.ArrayList; -import java.util.HashSet; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.CallOncoPrintSpecParser; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticDataTypes; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintGeneDisplaySpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintLangException; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintSpecification; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ParserOutput; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.GeneticProfile; - -public class OncoPrintSpecificationDriver { - - /** - * A wrapper for the OncoPrintSpec parser, which includes the list of genetic - * data types input in the user's checkboxes. Performs two complementary - * functions: - *

      - *
    • LimitLanguageDefaultToProfile: Limit the specification returned by the - * language to the genetic data types that the user selects in the - * checkboxes. - *
    • LanguageCannotOverrunProfile: If the user explicitly selects a data - * type in the language, but does not choose it in the checkboxes, add an - * error. - *
    - *

    - * - * @param geneListStr - * an OncoPrintSpec specification - * @param geneticProfileIdSet - * profile strings entered by the user - * @param profileList - * all profiles for the selected cancer type - * @return output from parsing geneListStr - */ - static public ParserOutput callOncoPrintSpecParserDriver(String geneListStr, HashSet geneticProfileIdSet, - ArrayList profileList, double zScoreThreshold, double rppaScoreThreshold) { - // I. LimitLanguageDefaultToProfile: Create an OncoPrintGeneDisplaySpec - // from the geneticProfileIdSet, and use that as the default for the parse - // make an OncoPrintGeneDisplaySpec, from geneticProfileIdSet, profileList and zScoreThreshold - OncoPrintGeneDisplaySpec checkboxInputOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - for (GeneticProfile geneticProfile : profileList) { - if (geneticProfileIdSet.contains(geneticProfile.getStableId())) { - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - checkboxInputOncoPrintGeneDisplaySpec.setDefault( GeneticDataTypes.CopyNumberAlteration ); - } - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MRNA_EXPRESSION) { - checkboxInputOncoPrintGeneDisplaySpec.setDefaultExpression(zScoreThreshold, GeneticDataTypes.Expression); - } - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.PROTEIN_LEVEL) { - checkboxInputOncoPrintGeneDisplaySpec.setDefaultExpression(rppaScoreThreshold, GeneticDataTypes.RPPA); - } - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.PROTEIN_ARRAY_PROTEIN_LEVEL) { - checkboxInputOncoPrintGeneDisplaySpec.setDefaultExpression(rppaScoreThreshold, GeneticDataTypes.RPPA); - } - if (geneticProfile.getGeneticAlterationType() == GeneticAlterationType.MUTATION_EXTENDED) { - checkboxInputOncoPrintGeneDisplaySpec.setDefault( GeneticDataTypes.Mutation ); - } - } - } - ParserOutput theOncoPrintSpecParserOutput = CallOncoPrintSpecParser.callOncoPrintSpecParser(geneListStr, checkboxInputOncoPrintGeneDisplaySpec); - // II. LanguageCannotOverrunProfile: If the OncoSpec asked for data types - // not in the geneticProfileIdSet, add semantics error(s) - OncoPrintSpecification anOncoPrintSpecification = theOncoPrintSpecParserOutput.getTheOncoPrintSpecification(); - ArrayList theSemanticsErrors = theOncoPrintSpecParserOutput.getSemanticsErrors(); - OncoPrintGeneDisplaySpec unionOncoPrintGeneDisplaySpec = anOncoPrintSpecification.getUnionOfPossibleLevels(); - for (GeneticDataTypes aGeneticDataType : GeneticDataTypes.values()) { - if (unionOncoPrintGeneDisplaySpec.typeDifference(checkboxInputOncoPrintGeneDisplaySpec, aGeneticDataType)) { - theSemanticsErrors.add(new OncoPrintLangException("Error: " + aGeneticDataType + - " specified in the list of genes, but not selected in the Genetic Profile Checkboxes.")); - } - } - return theOncoPrintSpecParserOutput; - } - - /** - * A wrapper for the OncoPrintSpec parser, which includes the list of genetic - * data types input in the user's checkboxes. Performs two complementary - * functions: - *

      - *
    • LimitLanguageDefaultToProfile: Limit the specification returned by the - * language to the genetic data types that the user selects in the - * checkboxes. - *
    • LanguageCannotOverrunProfile: If the user explicitly selects a data - * type in the language, but does not choose it in the checkboxes, add an - * error. - *
    - *

    - * - * @param geneListStr an OncoPrintSpec specification - * @return output from parsing geneListStr - */ - static public ParserOutput callOncoPrintSpecParserDriver(String geneListStr) { - OncoPrintGeneDisplaySpec checkboxInputOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - ParserOutput theOncoPrintSpecParserOutput = CallOncoPrintSpecParser.callOncoPrintSpecParser(geneListStr, checkboxInputOncoPrintGeneDisplaySpec); - // II. LanguageCannotOverrunProfile: If the OncoSpec asked for data types - // not in the geneticProfileIdSet, add semantics error(s) - OncoPrintSpecification anOncoPrintSpecification = theOncoPrintSpecParserOutput.getTheOncoPrintSpecification(); - ArrayList theSemanticsErrors = theOncoPrintSpecParserOutput.getSemanticsErrors(); - OncoPrintGeneDisplaySpec unionOncoPrintGeneDisplaySpec = anOncoPrintSpecification.getUnionOfPossibleLevels(); - for (GeneticDataTypes aGeneticDataType : GeneticDataTypes.values()) { - if (unionOncoPrintGeneDisplaySpec.typeDifference(checkboxInputOncoPrintGeneDisplaySpec, aGeneticDataType)) { - theSemanticsErrors.add( new OncoPrintLangException("Error: " + aGeneticDataType + - " specified in the list of genes, but not selected in the Genetic Profile Checkboxes.")); - } - } - return theOncoPrintSpecParserOutput; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/OncoPrintUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/OncoPrintUtil.java deleted file mode 100644 index 22066a5ebca..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/OncoPrintUtil.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.SampleList; - -import java.util.Formatter; -import java.util.List; - -public class OncoPrintUtil { - - /** - * Constructs the OncoPrint patient set description. - * - * @param sampleSetId String - * @param sampleSets List - * - * @return String - */ - public static String getSampleSetDescription(String sampleSetId, List sampleSets) { - - StringBuilder builder = new StringBuilder(); - for (SampleList sampleSet : sampleSets) { - if (sampleSetId.equals(sampleSet.getStableId())) { - builder.append(sampleSet.getName() + ": " + sampleSet.getDescription()); - } - } - return builder.toString(); - } - - /** - * Format percentage. - * - *

    - * if value == 0 return "--" - * case value - * 0: return "--" - * 0%" - * - * @param value double - * - * @return String - */ - public static String alterationValueToString(double value) { - - // in oncoPrint show 0 percent as 0%, not -- - if (0.0 < value && value <= 0.01) { - return "<1%"; - } - - // if( 1.0 < value ){ - Formatter f = new Formatter(); - f.format("%.0f", value * 100.0); - return f.out().toString() + "%"; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/OncokbHotspotUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/OncokbHotspotUtil.java deleted file mode 100644 index fda9eaa6e7e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/OncokbHotspotUtil.java +++ /dev/null @@ -1,121 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ -package org.mskcc.cbio.portal.util; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.util.*; -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -/** - * - * @author jgao - */ -public final class OncokbHotspotUtil { - private OncokbHotspotUtil() {} - private static Map> linkMap = null; - - - /** - * - * @param gene - * @param alteration - * @return - */ - public static Boolean getOncokbHotspot(String gene, String alteration) throws IOException { - if (linkMap==null) { - linkMap = getOncokbHotspot(); - } - - Map geneInfo = linkMap.get(gene); - if (geneInfo != null) { - Pattern p = Pattern.compile("([A-Z][0-9]+)([A-Z])"); - Matcher m = p.matcher(alteration); - if (m.matches()) { - String codon = m.group(1); - if(geneInfo.containsKey(codon)) { - return true; - }else{ - return false; - } - }else{ - return false; - } - } - - return false; - } - - /** - * - * @return Map> - * @throws IOException - */ - private static Map> getOncokbHotspot() throws IOException { - Map> hotspots - = new HashMap<>(); - - InputStream inputStream = OncokbHotspotUtil.class.getClassLoader().getResourceAsStream("chang_hotspot.txt"); - BufferedReader br = new BufferedReader(new InputStreamReader(inputStream)); - String line; - while ((line = br.readLine()) != null) { - String[] items = line.split("\t"); - if(items.length > 1 && items.length < 4) { - String hugoSymbol = items[0]; - String codon = items[1]; -// String[] variants = items.length>2?items[2].split("\\|"):null; - - if(codon != null) { - if(!hotspots.containsKey(hugoSymbol)) { - hotspots.put(hugoSymbol, new HashMap()); - } -// if(variants != null && variants.length > 0) { -// for(String aa : variants) { -// String [] datum = aa.split(":"); -// if(datum.length == 2) { -// hotspots.get(hugoSymbol).put(codon+datum[0], Integer.parseInt(datum[1])); -// } -// } -// }else{ - hotspots.get(hugoSymbol).put(codon, 1000000); -// } - } - } - } - - return hotspots; - } -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/PhpCache.java b/core/src/main/java/org/mskcc/cbio/portal/util/PhpCache.java deleted file mode 100644 index cb9c3fa3c0f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/PhpCache.java +++ /dev/null @@ -1,158 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.apache.commons.httpclient.HttpClient; -import org.apache.commons.httpclient.HttpException; -import org.apache.commons.httpclient.HttpStatus; -import org.apache.commons.httpclient.methods.GetMethod; - -import java.io.IOException; -import java.util.Date; - -/** - * PHP Cache of Global Components. - * Enables us to retrieve, store and display global header, footer and righ column, - * as globally defined for all pages within the cBio Cancer Genomics web site. - */ -public class PhpCache { - private static PhpCache cache; - private String header; - private String footer; - private String rightCol; - private Date timeOfLastRetrieval; - private static final long TWO_HOURS = 1000 * 60 * 60 * 2; - - /** - * Gets the singleton instance of this class. - * - * @return PhpCache Object. - */ - public static PhpCache getInstance() { - if (cache == null) { - cache = new PhpCache(); - } - return cache; - } - - /** - * Private Constructor. - * Enforces singleton pattern. - */ - private PhpCache() { - initCache(); - } - - /** - * Initializes the PHP Cache. - */ - private void initCache() { - header = getPhpComponent("header.php"); - footer = getPhpComponent("footer.php"); - rightCol = getPhpComponent("right_column.php"); - timeOfLastRetrieval = new Date(); - } - - /** - * Gets the header. - * - * @return header component. - */ - public String getHeader() { - conditionallyUpdateCache(); - return header; - } - - /** - * Gets the footer. - * - * @return footer component. - */ - public String getFooter() { - conditionallyUpdateCache(); - return footer; - } - - /** - * Gets the right column. - * - * @return right column. - */ - public String getRightCol() { - conditionallyUpdateCache(); - return rightCol; - } - - /** - * Conditionally update the cache every 2 Hours. - */ - private void conditionallyUpdateCache() { - Date currentDate = new Date(); - long diff = currentDate.getTime() - timeOfLastRetrieval.getTime(); - if (diff > TWO_HOURS) { - initCache(); - } - } - - /** - * Retrieve the PHP Component from the cBio Web Site. - * - * @param component component URL. - * @return component text/html. - */ - private String getPhpComponent(String component) { - String baseUrl = "http://cbio.mskcc.org/cancergenomics/components/"; - - // Create Apache HTTP Client - HttpClient client = new HttpClient(); - - try { - GetMethod method = new GetMethod(baseUrl + component); - - // Extract HTTP Status Code - int statusCode = client.executeMethod(method); - - // If all is OK, extract the response text - if (statusCode == HttpStatus.SC_OK) { - return ResponseUtil.getResponseString(method); - } else { - return ("Could not retrieve: " + component); - } - } catch (HttpException e) { - return ("Could not retrieve: " + component); - } catch (IOException e) { - return ("Could not retrieve: " + component); - } - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ProfileMerger.java b/core/src/main/java/org/mskcc/cbio/portal/util/ProfileMerger.java deleted file mode 100644 index c0d8f5d0234..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ProfileMerger.java +++ /dev/null @@ -1,224 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.ArrayList; -import java.util.HashMap; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.ProfileData; - -/* - * TODO: - * - * I think that these changes should be made to make that code more robust and easier, i.e. faster, to modify - * in the future. - * A value in a merged profile is stored as a String of the RE form (TYPE:VALUE;)+ I replaced constant ':' - * and ';' as used - * in these strings by defined constants ProfileMerger.TYPE_VALUE_SEPARATOR and ProfileMerger.VALUE_SEPARATOR, - * respectively. - * - * Since the VALUE in a PROTEIN_LEVEL or PHOSPHORYLATION data type can contain a ':', - * I changed ValueParser.parseValue to parse - * each TYPE:VALUE on the first ':'. - * - * These changes cause the tests on lines 154-155 of TestValueParser.testValueParser to fail. - * Unclear that we need these tests so I disabled them. - * - * Interactions between ValueParser and OncoPrintGeneDisplaySpec are overly complex and should be simplified. - * - * String-based enumerations, especially GeneticAlterationType, should be replaced with Java enums to - * 1) simplify the code, by, for example, - * replacing cascading if-else statements with switch statements, 2) provide reliable compile-time type checking, - * 3) provide opportunities for greater generality (such as operations on sets of enumerations), and - * 4) simplify the addition of new data types. Also, multiple enumerations, including those in - * the OncoSpec code, should be combined into one. - * - * ProfileMerger.determineAlteredStatus should return an object that stores the alteration, rather than a String, - * so we have the data already structured and it doesn't need to be parsed again (by ValueParser). - */ -/** - * Merge multiple ProfileData objects into one, so the data (in a String) for each gene,case pair - * contains the data from all input ProfileData objects. - */ -public class ProfileMerger { - private ProfileData profileData; - static final String VALUE_SEPARATOR = ";"; // Separator placed between multiple datatypes in the merged value - static final String TYPE_VALUE_SEPARATOR = ":"; // Separator placed between a datatype name and its value - - /** - * Constructor. - * - * @param profileList ArrayList of ProfileData Objects. - */ - public ProfileMerger(ArrayList profileList) { - - // Create Union of all Cases and all Genes - ArrayList caseList = new ArrayList(); - ArrayList geneList = new ArrayList(); - createUnion(profileList, caseList, geneList); - - // Create new HashMap of Merged Data - HashMap map = new HashMap(); - - // Perform the actual merge - mergeProfiles(map, profileList, caseList, geneList); - } - - /** - * Gets the new merged profile data object. - * - * @return ProfileData Object. - */ - public ProfileData getMergedProfile() { - return this.profileData; - } - - /** - * Perform the merge. - */ - private void mergeProfiles(HashMap map, ArrayList profileList, - ArrayList caseList, ArrayList geneList) { - // Iterate through all genes - for (String gene : geneList) { - - // Iterate through all cases - for (String caseId : caseList) { - - // Determine status of gene X in caseId Y. - String status = determineAlteredStatus(profileList, gene, caseId); - - // Store status in hash map - String key = createKey(gene, caseId); - map.put(key, status.toString()); - } - } - profileData = new ProfileData(map, geneList, caseList); - } - - /** - * Determines the alteration status of gene X in case Y. - */ - private String determineAlteredStatus(ArrayList profileList, - String gene, String caseId) { - // TODO: APG: I would prefer to have this return an object that stores the alteration, rather than a String - // so we have the data already structured and it doesn't need to be parsed again (by ValueParser) - StringBuffer status = new StringBuffer(""); - - // Iterate through all profiles - for (ProfileData data : profileList) { - - // Get the data value and alteration type for gene X in caseId Y in profile Z - String value = data.getValue(gene, caseId); - GeneticAlterationType alterationType = data.getGeneticProfile().getGeneticAlterationType(); - - // Handle Copy Number Changes - if (alterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - if (value != null) { - status.append(GeneticAlterationType.COPY_NUMBER_ALTERATION.name() + TYPE_VALUE_SEPARATOR - + value + VALUE_SEPARATOR); - } - } else if (alterationType == GeneticAlterationType.MRNA_EXPRESSION) { - // Handle mRNA Data - if (value != null) { - status.append(GeneticAlterationType.MRNA_EXPRESSION.name() - + TYPE_VALUE_SEPARATOR + value + VALUE_SEPARATOR); - } - } else if (alterationType == GeneticAlterationType.MUTATION_EXTENDED) { - // Handle Mutation Data - if (value != null) { - status.append(GeneticAlterationType.MUTATION_EXTENDED.name() - + TYPE_VALUE_SEPARATOR + value + VALUE_SEPARATOR); - } - } else if (alterationType == GeneticAlterationType.METHYLATION) { - if (value != null) { - status.append(GeneticAlterationType.METHYLATION.name() - + TYPE_VALUE_SEPARATOR + value + VALUE_SEPARATOR); - } - } else if (alterationType == GeneticAlterationType.METHYLATION_BINARY) { - if (value != null) { - status.append(GeneticAlterationType.METHYLATION_BINARY.name() - + TYPE_VALUE_SEPARATOR + value + VALUE_SEPARATOR); - } - } else if (alterationType == GeneticAlterationType.PROTEIN_LEVEL) { - if (value != null) { - status.append(GeneticAlterationType.PROTEIN_LEVEL.name() - + TYPE_VALUE_SEPARATOR + value + VALUE_SEPARATOR); - } - } else if (alterationType == GeneticAlterationType.PHOSPHORYLATION) { - if (value != null) { - status.append(GeneticAlterationType.PHOSPHORYLATION.name() - + TYPE_VALUE_SEPARATOR + value + VALUE_SEPARATOR); - } - } else if (alterationType == GeneticAlterationType.PROTEIN_ARRAY_PROTEIN_LEVEL) { - if (value != null) { - status.append(GeneticAlterationType.PROTEIN_ARRAY_PROTEIN_LEVEL.name() - + TYPE_VALUE_SEPARATOR + value + VALUE_SEPARATOR); - } - } - } - return status.toString(); - } - - /** - * Creates the Union of all Cases and the Union of all Genes. - */ - private void createUnion(ArrayList profileList, - ArrayList caseIdList, ArrayList geneList) { - - // Iterate through all profiles - for (ProfileData data : profileList) { - - // Get the case list and the gene list - ArrayList currentCaseList = data.getCaseIdList(); - ArrayList currentGeneList = data.getGeneList(); - - // Conditionally add each new case to the global case list - for (String currentCaseId : currentCaseList) { - if (!caseIdList.contains(currentCaseId)) { - caseIdList.add(currentCaseId); - } - } - - // Conditionally add each new gene to the global gene list - for (String currentGene : currentGeneList) { - if (!geneList.contains(currentGene)) { - geneList.add(currentGene); - } - } - } - } - - private String createKey(String geneSymbol, String caseId) { - return geneSymbol + ":" + caseId; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ProgressMonitor.java b/core/src/main/java/org/mskcc/cbio/portal/util/ProgressMonitor.java deleted file mode 100644 index cd95a9aee06..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ProgressMonitor.java +++ /dev/null @@ -1,268 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.HashMap; -import java.util.Iterator; -import java.util.List; -import java.util.TreeSet; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Monitors Progress of Long Term Tasks. - * - * @author Ethan Cerami. - */ -public class ProgressMonitor { - private int maxValue; - private int curValue; - private String currentMessage; - private StringBuffer log = new StringBuffer(); - private static Logger logger = LoggerFactory.getLogger(ProgressMonitor.class); - private boolean consoleMode; - private boolean showProgress; - private TreeSet warnings = new TreeSet<>(); - private HashMap warningCounts = new HashMap<>(); - private List debugMessages = new ArrayList<>(); - - private static final ProgressMonitor progressMonitor = new ProgressMonitor(); - - /** - * Private ctor for enforcing singleton - */ - private ProgressMonitor() { - - } - - private static boolean isRunningOnServer() { - return ServerDetector.getServerId() != null; - } - /** - * Sets Console Flag. - * When set to true Progress Monitor Messages are displayed to System.out. - * - * @param consoleFlag Console Mode Flag. - */ - public static void setConsoleMode(boolean consoleFlag) { - progressMonitor.consoleMode = consoleFlag; - } - - /** - * Sets consoleMode to true and tries to infer showProgress mode from args. If an argument - * with name "--noprogress" is found, then showProgress is set to false - * - * @param args - */ - public static void setConsoleModeAndParseShowProgress(String[] args) { - //default - setConsoleMode(true); - if (Arrays.asList(args).contains("--noprogress")) { - setShowProgress(false); - } else { - //default: - setShowProgress(true); - } - - } - - /** - * Whether the progress (in % complete and memory used) should be - * printed to the console. - * - * @param showProgress : set to false to avoid extra messages about % complete and memory usage. - */ - public static void setShowProgress(boolean showProgress) { - progressMonitor.showProgress = showProgress; - } - - /** - * Whether the progress (in % complete and memory used) should be - * printed to the console. - * - * @return returns true if !isRunningOnServer() and progressMonitor.showProgress==true - */ - public static boolean isShowProgress() { - return !isRunningOnServer() && progressMonitor.showProgress; - } - - /** - * Gets Console Mode Flag. - * - * @return Boolean Flag. - */ - public static boolean isConsoleMode() { - return !isRunningOnServer() && progressMonitor.consoleMode; - } - - /** - * Gets Percentage Complete. - * - * @return double value. - */ - public static double getPercentComplete() { - if (progressMonitor.curValue == 0) { - return 0.0; - } else { - return (progressMonitor.curValue / (double) progressMonitor.maxValue); - } - } - - /** - * Gets Max Value. - * - * @return max value. - */ - public static int getMaxValue() { - return progressMonitor.maxValue; - } - - /** - * Sets Max Value. - * - * @param maxValue Max Value. - */ - public static void setMaxValue(int maxValue) { - progressMonitor.maxValue = maxValue; - progressMonitor.curValue = 0; - } - - /** - * Gets Current Value. - * - * @return Current Value. - */ - public static int getCurValue() { - return progressMonitor.curValue; - } - - /** - * Increments the Current Value. - */ - public static void incrementCurValue() { - progressMonitor.curValue++; - } - - /** - * Sets the Current Value. - * - * @param curValue Current Value. - */ - public static void setCurValue(int curValue) { - progressMonitor.curValue = curValue; - } - - /** - * Gets the Current Task Message. - * - * @return Current Task Message. - */ - public static String getCurrentMessage() { - return progressMonitor.currentMessage; - } - - /** - * Gets Log of All Messages. - * - * @return String Object. - */ - public static String getLog() { - if (isRunningOnServer()) - return null; - return progressMonitor.log.toString(); - } - - /** - * Logs a Message. - * - * @param currentMessage Current Task Message. - */ - public static void setCurrentMessage(String currentMessage) { - if (isRunningOnServer()) - return; - progressMonitor.currentMessage = currentMessage; - progressMonitor.log.append(currentMessage + "\n"); - if (progressMonitor.consoleMode) { - System.out.println(currentMessage); - } - } - - public static void logWarning(String warning) { - logger.warn(warning); - if (isRunningOnServer()) - return; - progressMonitor.warnings.add(warning); - if (!progressMonitor.warningCounts.containsKey(warning)) { - progressMonitor.warningCounts.put(warning, 0); - } - progressMonitor.warningCounts.put(warning, progressMonitor.warningCounts.get(warning)+1); - } - - public static void logDebug(String debugMessage) { - logger.debug(debugMessage); - if (isShowProgress()) - progressMonitor.debugMessages.add(debugMessage); - } - - public static ArrayList getWarnings() { - ArrayList ret = new ArrayList<>(); - if (isRunningOnServer()) - return ret; - for(Iterator sit = progressMonitor.warnings.iterator(); sit.hasNext(); ) { - String w = sit.next(); - ret.add(w + "; "+progressMonitor.warningCounts.get(w)+"x"); - } - return ret; - } - - /** - * Reset the warnings list. - */ - public static void resetWarnings() { - progressMonitor.warnings.clear(); - progressMonitor.warningCounts.clear(); - } - - public static ArrayList getMessages() { - ArrayList ret = getWarnings(); - ret.addAll(progressMonitor.debugMessages); - return ret; - } - - public static List getDebugMessages() { - return progressMonitor.debugMessages; - - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ResponseUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/ResponseUtil.java deleted file mode 100644 index 563afffe314..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ResponseUtil.java +++ /dev/null @@ -1,76 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.apache.commons.httpclient.HttpMethodBase; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; - -/** - * Response Utility Class. - */ -public class ResponseUtil { - - /** - * Reads in the Response String from Server. - * - * @param method HTTP Method. - * @return Response String. - * @throws IOException IO Error. - */ - public static String getResponseString(HttpMethodBase method) throws IOException { - return getResponseString(method.getResponseBodyAsStream()); - } - - /** - * Reads in the Response String from Server. - * - * @param inStream InputStream. - * @return Response String. - * @throws IOException IO Error. - */ - public static String getResponseString(InputStream inStream) throws IOException { - BufferedReader in = new BufferedReader(new InputStreamReader(inStream)); - StringBuffer buf = new StringBuffer(); - String line = in.readLine(); - while (line != null) { - buf.append(line); - buf.append("\n"); - line = in.readLine(); - } - return buf.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/SampleSetUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/SampleSetUtil.java deleted file mode 100644 index 4af79e8fb29..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/SampleSetUtil.java +++ /dev/null @@ -1,126 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.web_api.GetSampleLists; - -import java.util.*; - -/** - * Utility class for the user-defined sample sets (samplet ID list). - * - * @author Selcuk Onur Sumer - */ -public class SampleSetUtil -{ - /** - * Checks whether the provided sample IDs are valid for a specific - * cancer study. This method returns a list of invalid samples if - * any, or returns an empty list if all the samples are valid. - * - * @param studyId stable cancer study id - * @param sampleIds sample IDs as a single string - * @return list of invalid samples - * @throws DaoException if a DB error occurs - */ - public static List validateSampleSet(String studyId, - String sampleIds) throws DaoException - { - ArrayList invalidSample = new ArrayList(); - - // get cancer study for the given stable id - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyId); - int iStudyId = study.getInternalId(); - - if (sampleIds != null) - { - - // validate each sample ID - for(String sampleId: sampleIds.trim().split("\\s+")) - { - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId(iStudyId, sampleId); - - if (sample==null) - { - invalidSample.add(sampleId); - } - } - } - - return invalidSample; - } - - /** - * Shortens the (possibly long) user-defined sample id list by hashing. - * Also adds the generated (key, text) pair to the database for - * future reference. - * - * @param sampleIds sample ID string to be shortened - * @return short (hashed) version of sample IDs - * @throws DaoException - */ - public static String shortenSampleIds(String sampleIds) - { - // return empty - return ""; - } - - /** - * Retrieves the sample ID list corresponding to the given key. - * - * @param sampleIdsKey key for a specific sample id list - * @return sample id list corresponding to the given key - * @throws DaoException - */ - public static String getSampleIds(String sampleIdsKey) - { - // return empty - return ""; - } - - /** - * Normalize the given sample list by trimming and replacing any white space - * character with single space. This is to prevent same sample lists - * to be interpreted as different lists just because of the different white - * space characters. - * - * @param sampleIds list of sample ids to be normalized - * @return normalized string with the same sample ids - */ - public static String normalizeSampleIds(String sampleIds) - { - return sampleIds.trim().replaceAll("\\s", " "); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/SequenceCenterUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/SequenceCenterUtil.java deleted file mode 100644 index 2409b5d03b2..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/SequenceCenterUtil.java +++ /dev/null @@ -1,51 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -public class SequenceCenterUtil { - - public static String getSequencingCenterAbbrev(String center) { - if (center != null) { - if (center.equalsIgnoreCase("broad.mit.edu")) { - return "Broad"; - } else if (center.equalsIgnoreCase("genome.wustl.edu")) { - return "WashU"; - } else if (center.equalsIgnoreCase("hgsc.bcm.edu")) { - return "Baylor"; - } else { - return center; - } - } - return center; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ServerDetector.java b/core/src/main/java/org/mskcc/cbio/portal/util/ServerDetector.java deleted file mode 100644 index 1033ae42ca4..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ServerDetector.java +++ /dev/null @@ -1,347 +0,0 @@ -/** - * Copyright (c) 2000-2008 Liferay, Inc. All rights reserved. - * - * Permission is hereby granted, free of charge, to any person obtaining a copy - * of this software and associated documentation files (the "Software"), to deal - * in the Software without restriction, including without limitation the rights - * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell - * copies of the Software, and to permit persons to whom the Software is - * furnished to do so, subject to the following conditions: - * - * The above copyright notice and this permission notice shall be included in - * all copies or substantial portions of the Software. - * - * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR - * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, - * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE - * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER - * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, - * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE - * SOFTWARE. - */ - -package org.mskcc.cbio.portal.util; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - - -/** - * - * - * @author Brian Wing Shun Chan - * - */ -public class ServerDetector { - private static final Logger logger = LoggerFactory.getLogger(ServerDetector.class); - private static boolean isInstanceInitialized = false; - private static ServerDetector instance = new ServerDetector(); - - private String serverId; - private Boolean geronimo; - private Boolean glassfish; - private Boolean jBoss; - private Boolean jetty; - private Boolean jonas; - private Boolean oc4j; - private Boolean orion; - private Boolean pramati; - private Boolean resin; - private Boolean rexIP; - private Boolean tomcat; - private Boolean webLogic; - private Boolean webSphere; - - public static final String GERONIMO_CLASS = - "/org/apache/geronimo/system/main/Daemon.class"; - - public static final String GERONIMO_ID = "geronimo"; - - public static final String GLASSFISH_ID = "glassfish"; - - public static final String GLASSFISH_SYSTEM_PROPERTY = - "com.sun.aas.instanceRoot"; - - public static final String JBOSS_CLASS = "/org/jboss/Main.class"; - - public static final String JBOSS_ID = "jboss"; - - public static final String JETTY_CLASS = "/org/mortbay/jetty/Server.class"; - - public static final String JETTY_ID = "jetty"; - - public static final String JONAS_CLASS = - "/org/objectweb/jonas/server/Server.class"; - - public static final String JONAS_ID = "jonas"; - - public static final String OC4J_CLASS = - "oracle.oc4j.util.ClassUtils"; - - public static final String OC4J_ID = "oc4j"; - - public static final String ORION_CLASS = - "/com/evermind/server/ApplicationServer.class"; - - public static final String ORION_ID = "orion"; - - public static final String PRAMATI_CLASS = "/com/pramati/Server.class"; - - public static final String PRAMATI_ID = "pramati"; - - public static final String RESIN_CLASS = - "/com/caucho/server/resin/Resin.class"; - - public static final String RESIN_ID = "resin"; - - public static final String REXIP_CLASS = "/com/tcc/Main.class"; - - public static final String REXIP_ID = "rexip"; - - public static final String TOMCAT_BOOTSTRAP_CLASS = - "/org/apache/catalina/startup/Bootstrap.class"; - - public static final String TOMCAT_EMBEDDED_CLASS = - "/org/apache/catalina/startup/Embedded.class"; - - public static final String TOMCAT_ID = "tomcat"; - - public static final String WEBLOGIC_CLASS = "/weblogic/Server.class"; - - public static final String WEBLOGIC_ID = "weblogic"; - - public static final String WEBSPHERE_CLASS = - "/com/ibm/websphere/product/VersionInfo.class"; - - public static final String WEBSPHERE_ID = "websphere"; - - public static String getServerId() { - ServerDetector sd = instance; - - if (!isInstanceInitialized) { - if (isGeronimo()) { - sd.serverId = GERONIMO_ID; - } - else if (isGlassfish()) { - sd.serverId = GLASSFISH_ID; - } - else if (isJBoss()) { - sd.serverId = JBOSS_ID; - } - else if (isJOnAS()) { - sd.serverId = JONAS_ID; - } - else if (isOC4J()) { - sd.serverId = OC4J_ID; - } - else if (isOrion()) { - sd.serverId = ORION_ID; - } - else if (isPramati()) { - sd.serverId = PRAMATI_ID; - } - else if (isResin()) { - sd.serverId = RESIN_ID; - } - else if (isRexIP()) { - sd.serverId = REXIP_ID; - } - else if (isWebLogic()) { - sd.serverId = WEBLOGIC_ID; - } - else if (isWebSphere()) { - sd.serverId = WEBSPHERE_ID; - } - - if (isJetty()) { - if (sd.serverId == null) { - sd.serverId = JETTY_ID; - } - else { - sd.serverId += "-" + JETTY_ID; - } - } - else if (isTomcat()) { - if (sd.serverId == null) { - sd.serverId = TOMCAT_ID; - } - else { - sd.serverId += "-" + TOMCAT_ID; - } - } - - if (sd.serverId == null && logger.isInfoEnabled()) { - logger.info("Detected server " + sd.serverId); - } - isInstanceInitialized = true; - } - - return sd.serverId; - } - - public static boolean isGeronimo() { - ServerDetector sd = instance; - - if (sd.geronimo == null) { - sd.geronimo = _detect(GERONIMO_CLASS); - } - - return sd.geronimo.booleanValue(); - } - - public static boolean isGlassfish() { - ServerDetector sd = instance; - - if (sd.glassfish == null) { - String value = System.getProperty(GLASSFISH_SYSTEM_PROPERTY); - - if (value != null) { - sd.glassfish = Boolean.TRUE; - } - else { - sd.glassfish = Boolean.FALSE; - } - } - - return sd.glassfish.booleanValue(); - } - - public static boolean isJBoss() { - ServerDetector sd = instance; - - if (sd.jBoss == null) { - sd.jBoss = _detect(JBOSS_CLASS); - } - - return sd.jBoss.booleanValue(); - } - - public static boolean isJetty() { - ServerDetector sd = instance; - - if (sd.jetty == null) { - sd.jetty = _detect(JETTY_CLASS); - } - - return sd.jetty.booleanValue(); - } - - public static boolean isJOnAS() { - ServerDetector sd = instance; - - if (sd.jonas == null) { - sd.jonas = _detect(JONAS_CLASS); - } - - return sd.jonas.booleanValue(); - } - - public static boolean isOC4J() { - ServerDetector sd = instance; - - if (sd.oc4j == null) { - sd.oc4j = _detect(OC4J_CLASS); - } - - return sd.oc4j.booleanValue(); - } - - public static boolean isOrion() { - ServerDetector sd = instance; - - if (sd.orion == null) { - sd.orion = _detect(ORION_CLASS); - } - - return sd.orion.booleanValue(); - } - - public static boolean isPramati() { - ServerDetector sd = instance; - - if (sd.pramati == null) { - sd.pramati = _detect(PRAMATI_CLASS); - } - - return sd.pramati.booleanValue(); - } - - public static boolean isResin() { - ServerDetector sd = instance; - - if (sd.resin == null) { - sd.resin = _detect(RESIN_CLASS); - } - - return sd.resin.booleanValue(); - } - - public static boolean isRexIP() { - ServerDetector sd = instance; - - if (sd.rexIP == null) { - sd.rexIP = _detect(REXIP_CLASS); - } - - return sd.rexIP.booleanValue(); - } - - public static boolean isTomcat() { - ServerDetector sd = instance; - - if (sd.tomcat == null) { - sd.tomcat = _detect(TOMCAT_BOOTSTRAP_CLASS); - } - - if (sd.tomcat == null) { - sd.tomcat = _detect(TOMCAT_EMBEDDED_CLASS); - } - - return sd.tomcat.booleanValue(); - } - - public static boolean isWebLogic() { - ServerDetector sd = instance; - - if (sd.webLogic == null) { - sd.webLogic = _detect(WEBLOGIC_CLASS); - } - - return sd.webLogic.booleanValue(); - } - - public static boolean isWebSphere() { - ServerDetector sd = instance; - - if (sd.webSphere == null) { - sd.webSphere = _detect(WEBSPHERE_CLASS); - } - - return sd.webSphere.booleanValue(); - } - - private static Boolean _detect(String className) { - try { - ClassLoader.getSystemClassLoader().loadClass(className); - - return Boolean.TRUE; - } - catch (ClassNotFoundException cnfe) { - ServerDetector sd = instance; - - Class c = sd.getClass(); - - if (c.getResource(className) != null) { - return Boolean.TRUE; - } - else { - return Boolean.FALSE; - } - } - } - - private ServerDetector() { - } - - -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceFilter.java b/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceFilter.java deleted file mode 100644 index 8c874e7e2f5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceFilter.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.apache.commons.lang3.StringUtils; - -import javax.servlet.*; -import javax.servlet.http.*; - -import java.io.IOException; - -/** - * - * @author Manda Wilson - */ -public class SessionServiceFilter implements Filter { - - private static Logger LOG = LoggerFactory.getLogger(SessionServiceFilter.class); - // this is used to see if we have already redirected - // to same URL with the URL fragment/anchor (#blah) - private static String RETRIEVED_SESSION_PARAM = "found_session"; - - @Override - public void init(FilterConfig aConfig) throws ServletException { - //do nothing - } - - @Override - public void destroy() { - //do nothing - } - - @Override - public void doFilter(ServletRequest aRequest, - ServletResponse aResponse, - FilterChain aChain) - throws IOException, ServletException { - LOG.debug("SessionServiceFilter.doFilter()"); - LOG.info("SessionServiceFilter.doFilter() -- calling request.getSession() to create a valid session which is a requirement for the session service API proxy"); - HttpServletRequest request = (HttpServletRequest) aRequest; - request.getSession(); - String sessionServiceURL = GlobalProperties.getSessionServiceUrl(); - if (!StringUtils.isBlank(sessionServiceURL)) { - SessionServiceRequestWrapper wrapper = new SessionServiceRequestWrapper(request); - // do not get this parameter from the SessionServiceRequestWrapper -- it was not stored as part of the session - String foundSession = request.getParameter(RETRIEVED_SESSION_PARAM); - String sessionId = wrapper.getParameter(SessionServiceRequestWrapper.SESSION_ID_PARAM); - String urlHashData = wrapper.getParameter("url_hash_data"); - // check if we already added #fragment to URL, - // if not try to pull the fragment (url_hash_data) from session service - if (StringUtils.isBlank(foundSession) && !StringUtils.isBlank(sessionId) && !StringUtils.isBlank(urlHashData)) { - String requestURI = request.getRequestURI(); - String newURI = requestURI + "?" - + SessionServiceRequestWrapper.SESSION_ID_PARAM + "=" + sessionId - + "&" + RETRIEVED_SESSION_PARAM + "=true" - + "#" + urlHashData; - LOG.debug("SessionServiceFilter.doFilter(): need to include URL anchor, redirecting to '" + newURI + "'"); - HttpServletResponse response = (HttpServletResponse) aResponse; - // we have to do a client side redirect so this is reflected in browser location bar for javascript - response.sendRedirect(newURI); - return; - } - aChain.doFilter(wrapper, aResponse); - } else { - aChain.doFilter(aRequest, aResponse); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceRequestWrapper.java b/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceRequestWrapper.java deleted file mode 100644 index 261c694210f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceRequestWrapper.java +++ /dev/null @@ -1,133 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.apache.commons.lang3.StringUtils; - -import java.util.Collections; -import java.util.Enumeration; -import java.util.Map; -import java.util.HashMap; - -import javax.servlet.*; -import javax.servlet.http.*; - -/** - * - * @author Manda Wilson - */ -public class SessionServiceRequestWrapper extends HttpServletRequestWrapper { - - public static final String SESSION_ERROR = "session_error"; - public static final String SESSION_ID_PARAM = "session_id"; - - private static Logger LOG = LoggerFactory.getLogger(SessionServiceRequestWrapper.class); - private Map storedParameters; - private String sessionId; - - /** - * If session_id is a request parameter, calls session-service API to retrieve - * stored session. Stores SESSION_ERROR as a request attribute if the session is - * not found, or the session service returns an error. Stored session parameters - * override current request parameters. If session_id is not a request parameter, - * request behaves as normal. - * - * @param request wrapped HttpServletRequest - */ - public SessionServiceRequestWrapper(final HttpServletRequest request) { - super(request); - LOG.debug("new SessionServiceRequestWrapper()"); - sessionId = super.getParameter(SESSION_ID_PARAM); - LOG.debug("new SessionServiceRequestWrapper(): request parameter '" + SESSION_ID_PARAM + "' = '" + sessionId + "'"); - if (!StringUtils.isBlank(sessionId)) { - LOG.debug("new SessionServiceRequestWrapper(): retrieved parameters = '" + storedParameters + "'"); - try { - storedParameters = SessionServiceUtil.getSession(sessionId); - if (storedParameters == null || storedParameters.size() == 0) { - request.setAttribute(SESSION_ERROR, "Session with id '" + sessionId + "' not found."); - } - } catch (Exception e) { - request.setAttribute(SESSION_ERROR, "Session service error. Session with id '" + sessionId + "' not loaded. Try again later. If problem persists contact site administrator."); - } - } - } - - @Override - public String getParameter(final String name) { - if (storedParameters != null && !SESSION_ID_PARAM.equals(name)) { - LOG.debug("SessionServiceRequestWrapper.getParameter(" + name + "): accessing parameters from stored session with id '" + sessionId + "'"); - if (storedParameters.containsKey(name)) { - String value = storedParameters.get(name)[0]; - LOG.debug("SessionServiceRequestWrapper.getParameter(" + name + "): returning '" + value + "'"); - return value; - } - LOG.debug("SessionServiceRequestWrapper.getParameter(" + name + "): returning null - parameter name not found"); - return null; - } - LOG.debug("SessionServiceRequestWrapper.getParameter(" + name + "): accessing current request parameters"); - return super.getParameter(name); - } - - @Override - public Map getParameterMap() { - if (storedParameters != null) { - LOG.debug("SessionServiceRequestWrapper.getParameterMap(): accessing parameters from stored session with id '" + sessionId + "'"); - return Collections.unmodifiableMap(storedParameters); - } - LOG.debug("SessionServiceRequestWrapper.getParameterMap(): accessing current request parameters"); - return super.getParameterMap(); - } - - @Override - public Enumeration getParameterNames() { - if (storedParameters != null) { - LOG.debug("SessionServiceRequestWrapper.getParameterNames(): accessing parameters from stored session with id '" + sessionId + "'"); - return Collections.enumeration(storedParameters.keySet()); - } - LOG.debug("SessionServiceRequestWrapper.getParameterNames(): accessing current request parameters"); - return super.getParameterNames(); - } - - @Override - public String[] getParameterValues(final String name) { - if (storedParameters != null) { - LOG.debug("SessionServiceRequestWrapper.getParameterValues(): accessing parameters from stored session with id '" + sessionId + "'"); - return storedParameters.get(name); - } - LOG.debug("SessionServiceRequestWrapper.getParameterValues(): accessing current request parameters"); - return super.getParameterValues(name); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceUtil.java deleted file mode 100644 index bd4bd2f30e5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/SessionServiceUtil.java +++ /dev/null @@ -1,171 +0,0 @@ -/* - * Copyright (c) 2015 - 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import com.fasterxml.jackson.core.type.TypeReference; -import com.fasterxml.jackson.databind.JsonNode; -import com.fasterxml.jackson.databind.ObjectMapper; -import java.io.IOException; -import java.io.StringWriter; -import java.net.HttpURLConnection; -import java.net.MalformedURLException; -import java.net.URL; -import java.nio.charset.Charset; -import java.util.Map; -import org.apache.commons.codec.binary.Base64; -import org.apache.commons.httpclient.HttpException; -import org.apache.commons.io.IOUtils; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.model.virtualstudy.VirtualStudy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpEntity; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpMethod; -import org.springframework.http.ResponseEntity; -import org.springframework.stereotype.Component; -import org.springframework.web.client.HttpStatusCodeException; -import org.springframework.web.client.RestTemplate; - -/** - * - * @author Manda Wilson - */ - -public class SessionServiceUtil { - - private static Logger LOG = LoggerFactory.getLogger(SessionServiceUtil.class); - - /** - * Returns an ServletRequest parameter map for a given sessionId. - * Returns null if the session was not found. - * - * @param sessionId - * @return an ServletRequest parameter map - * @throws HttpException if session service API returns with a response code that is not 404 or 200 - * @throws MalformedURLException - * @throws IOException - * @see ServletRequest#getParameterMap - */ - public static Map getSession(String sessionId) - throws HttpException, MalformedURLException, IOException { - LOG.debug("SessionServiceUtil.getSession()"); - Map parameterMap = null; - HttpURLConnection conn = null; - try { - URL url = new URL(GlobalProperties.getSessionServiceUrl() + "main_session/" + sessionId); - LOG.debug("SessionServiceUtil.getSession(): url = '" + url + "'"); - conn = (HttpURLConnection) url.openConnection(); - // Use basic authentication if provided (https://stackoverflow.com/questions/496651) - if (isBasicAuthEnabled()) { - conn.setRequestProperty("Authorization", getBasicAuthString()); - } - if (conn.getResponseCode() == HttpURLConnection.HTTP_OK) { - StringWriter stringWriter = new StringWriter(); - IOUtils.copy(conn.getInputStream(), stringWriter, Charset.forName("UTF-8")); - String contentString = stringWriter.toString(); - LOG.debug("SessionServiceUtil.getSession(): response = '" + contentString + "'"); - JsonNode json = new ObjectMapper().readTree(contentString); - LOG.debug("SessionServiceUtil.getSession(): response.data = '" + json.get("data").textValue() + "'"); - parameterMap = new ObjectMapper().readValue(json.get("data").toString(), new TypeReference>(){}); - } else { - LOG.warn("SessionServiceUtil.getSession(): conn.getResponseCode() = '" + conn.getResponseCode() + "'"); - if (conn.getResponseCode() == HttpURLConnection.HTTP_NOT_FOUND) { - return null; - } else if (conn.getResponseCode() == HttpURLConnection.HTTP_INTERNAL_ERROR) { - throw new HttpException("Internal server error"); - } else { - throw new HttpException("Unexpected error, response code '" + conn.getResponseCode() +"'"); - } - } - } catch (MalformedURLException mfue) { - LOG.warn("SessionServiceUtil.getSession(): MalformedURLException = '" + mfue.getMessage() + "'"); - throw mfue; - } catch (IOException ioe) { - LOG.warn("SessionServiceUtil.getSession(): IOException = '" + ioe.getMessage() + "'"); - throw ioe; - } finally { - if (conn != null) { - conn.disconnect(); - } - } - return parameterMap; - } - - public static Boolean isBasicAuthEnabled() { - return !GlobalProperties.getSessionServiceUser().equals("") && !GlobalProperties.getSessionServicePassword().equals(""); - } - - public static String getBasicAuthString() { - String auth = GlobalProperties.getSessionServiceUser() + ":" + GlobalProperties.getSessionServicePassword(); - byte[] encodedAuth = Base64.encodeBase64(auth.getBytes(Charset.forName("US-ASCII"))); - String authHeader = "Basic " + new String(encodedAuth); - return authHeader; - } - - public static HttpHeaders getHttpHeaders() { - return new HttpHeaders() {{ - if (isBasicAuthEnabled()) { - set( "Authorization", getBasicAuthString()); - } - set( "Content-Type", "application/json"); - }}; - } - - /** - * Return cohort object if there is success response from - * session-service API, else it would return null - * @param virtualStudyId - * @return cohort object - */ - public VirtualStudy getVirtualStudyData(String virtualStudyId) { - if (!GlobalProperties.getSessionServiceUrl().equals("")) { - try { - RestTemplate restTemplate = new RestTemplate(); - HttpEntity headers = new HttpEntity(getHttpHeaders()); - ResponseEntity responseEntity = restTemplate.exchange( - GlobalProperties.getSessionServiceUrl() + "virtual_study/" + virtualStudyId, - HttpMethod.GET, - headers, - VirtualStudy.class); - return responseEntity.getBody(); - } catch (HttpStatusCodeException exception) { - LOG.warn("SessionServiceUtil.getVirtualCohortData(): HttpStatusCodeException = '" + exception.getStatusCode() + "'"); - } - catch (Exception exception) { - LOG.warn("SessionServiceUtil.getVirtualCohortData(): Exception = '" + exception.getMessage() + "'"); - } - } - return null; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/SpringUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/SpringUtil.java deleted file mode 100644 index f8e2d57976f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/SpringUtil.java +++ /dev/null @@ -1,94 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.ApplicationContext; -import org.springframework.context.support.ClassPathXmlApplicationContext; -import org.springframework.stereotype.Component; - -@Component -public class SpringUtil { - private static final Logger log = LoggerFactory.getLogger(SpringUtil.class); - - private static AccessControl accessControl; - private static ApplicationContext applicationContext; - - @Autowired - public void setAccessControl(AccessControl accessControl) { - log.debug("Setting access control"); - SpringUtil.accessControl = accessControl; - } - - public static AccessControl getAccessControl() { - return accessControl; - } - - public static synchronized void initDataSource() { - if (SpringUtil.applicationContext == null) { - SpringUtil.applicationContext = new ClassPathXmlApplicationContext("classpath:applicationContext-persistenceConnections.xml"); - } - } - - /** - * Get the app context as initialized or refreshed by initDataSource() - * - * @return the Spring Framework application context - */ - public static ApplicationContext getApplicationContext() { - return applicationContext; - } - - /** - * setter to allow override by unit test classes (which run in different context, connecting - * to test DB). - * - * @param context - */ - public static void setApplicationContext(ApplicationContext context) { - SpringUtil.applicationContext = context; - } - - /** - * Directly injects a context into the class, so we don't need to open - * any more XML files. - * - * @param context - */ - public static synchronized void initDataSource(ApplicationContext context) { - SpringUtil.applicationContext = context; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/StableIdUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/StableIdUtil.java deleted file mode 100644 index 204c9ed92fa..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/StableIdUtil.java +++ /dev/null @@ -1,143 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.model.Patient; -import org.mskcc.cbio.portal.dao.DaoPatient; -import org.mskcc.cbio.portal.dao.DaoSample; - -import java.util.*; -import java.util.regex.*; - -public class StableIdUtil -{ - public static final String TCGA_BARCODE_PREFIX = "TCGA"; - - public static final Pattern TCGA_SAMPLE_BARCODE_REGEX = - Pattern.compile("^(TCGA-\\w\\w-\\w\\w\\w\\w-\\d\\d).*$"); - - public static final Pattern TCGA_SAMPLE_TYPE_BARCODE_REGEX = - Pattern.compile("^TCGA-\\w\\w-\\w\\w\\w\\w-(\\d\\d).*$"); - - public static final Pattern TCGA_PATIENT_BARCODE_FROM_SAMPLE_REGEX = - Pattern.compile("^(TCGA-\\w\\w-\\w\\w\\w\\w)\\-\\d\\d.*$"); - - public static String getPatientId(String barcode) - { - return getId(barcode, false); - } - - public static String getSampleId(String barcode) - { - return getId(barcode, true); - } - - private static String getId(String barcode, boolean forSample) - { - // do not process non-TCGA bar codes... - if (!barcode.startsWith(TCGA_BARCODE_PREFIX)) { - return barcode; - } - - String id = null; - String barcodeParts[] = clean(barcode).split("-"); - try { - // an example bar code looks like this: TCGA-13-1479-01A-01W - id = barcodeParts[0] + "-" + barcodeParts[1] + "-" + barcodeParts[2]; - if (forSample) { - id += "-" + barcodeParts[3]; - Matcher tcgaSampleBarcodeMatcher = TCGA_SAMPLE_BARCODE_REGEX.matcher(id); - id = (tcgaSampleBarcodeMatcher.find()) ? tcgaSampleBarcodeMatcher.group(1) : id; - } - } - catch (ArrayIndexOutOfBoundsException e) { - // many (all?) barcodes in overrides are just patient id's - tack on a primary solid tumor code - // (we don't have any blood cancer overrides that need a sample code) - id = barcode + "-01"; - } - - return id; - } - - private static String clean(String barcode) - { - if (barcode.contains("Tumor")) { - return barcode.replace("Tumor", "01"); - } - else if (barcode.contains("Normal")) { - return barcode.replace("Normal", "11"); - } - else { - return barcode; - } - } - - public static Sample.Type getTypeByTCGACode(String tcgaCode) - { - if (tcgaCode.equals("01")) { - return Sample.Type.PRIMARY_SOLID_TUMOR; - } - else if (tcgaCode.equals("02")) { - return Sample.Type.RECURRENT_SOLID_TUMOR; - } - else if (tcgaCode.equals("03")) { - return Sample.Type.PRIMARY_BLOOD_TUMOR; - } - else if (tcgaCode.equals("04")) { - return Sample.Type.RECURRENT_BLOOD_TUMOR; - } - else if (tcgaCode.equals("06")) { - return Sample.Type.METASTATIC; - } - else if (tcgaCode.equals("10")) { - return Sample.Type.BLOOD_DERIVED_NORMAL; - } - else if (tcgaCode.equals("11")) { - return Sample.Type.SOLID_TISSUES_NORMAL; - } - else { - return Sample.Type.PRIMARY_SOLID_TUMOR; - } - } - - public static boolean isNormal(String barcode) - { - Matcher tcgaSampleBarcodeMatcher = TCGA_SAMPLE_TYPE_BARCODE_REGEX.matcher(barcode); - if (tcgaSampleBarcodeMatcher.find()) { - Sample.Type type = getTypeByTCGACode(tcgaSampleBarcodeMatcher.group(1)); - return (type.equals(Sample.Type.BLOOD_DERIVED_NORMAL) || type.equals(Sample.Type.SOLID_TISSUES_NORMAL)); - } - return false; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/StructuralVariantUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/StructuralVariantUtil.java deleted file mode 100644 index 793a14bb1ad..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/StructuralVariantUtil.java +++ /dev/null @@ -1,219 +0,0 @@ -/* - * Copyright (c) 2019 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.*; -import java.util.*; - -import com.fasterxml.jackson.databind.*; -import org.mskcc.cbio.maf.NamespaceColumnParser; -import org.mskcc.cbio.maf.TabDelimitedFileUtil; -import org.mskcc.cbio.portal.model.StructuralVariant; - -/** - * @author ochoaa - */ -public class StructuralVariantUtil { - private HashMap columnIndexMap; - private final NamespaceColumnParser namespaceColumnParser; - private final ObjectMapper objectMapper = new ObjectMapper(); - - // Column names structural variant file - public static final String SAMPLE_ID = "Sample_ID"; - public static final String SITE1_ENTREZ_GENE_ID = "Site1_Entrez_Gene_Id"; - public static final String SITE1_HUGO_SYMBOL = "Site1_Hugo_Symbol"; - public static final String SITE1_ENSEMBL_TRANSCRIPT_ID = "Site1_Ensembl_Transcript_Id"; - public static final String SITE1_CHROMOSOME = "Site1_Chromosome"; - public static final String SITE1_POSITION = "Site1_Position"; - public static final String SITE1_CONTIG = "Site1_Contig"; - public static final String SITE1_REGION = "Site1_Region"; - public static final String SITE1_REGION_NUMBER = "Site1_Region_Number"; - public static final String SITE1_DESCRIPTION = "Site1_Description"; - public static final String SITE2_ENTREZ_GENE_ID = "Site2_Entrez_Gene_Id"; - public static final String SITE2_HUGO_SYMBOL = "Site2_Hugo_Symbol"; - public static final String SITE2_ENSEMBL_TRANSCRIPT_ID = "Site2_Ensembl_Transcript_Id"; - public static final String SITE2_CHROMOSOME = "Site2_Chromosome"; - public static final String SITE2_POSITION = "Site2_Position"; - public static final String SITE2_CONTIG = "Site2_Contig"; - public static final String SITE2_REGION = "Site2_Region"; - public static final String SITE2_REGION_NUMBER = "Site2_Region_Number"; - public static final String SITE2_DESCRIPTION = "Site2_Description"; - public static final String SITE2_EFFECT_ON_FRAME = "Site2_Effect_On_Frame"; - public static final String NCBI_BUILD = "NCBI_Build"; - public static final String DNA_SUPPORT = "DNA_Support"; - public static final String RNA_SUPPORT = "RNA_Support"; - public static final String NORMAL_READ_COUNT = "Normal_Read_Count"; - public static final String TUMOR_READ_COUNT = "Tumor_Read_Count"; - public static final String NORMAL_VARIANT_COUNT = "Normal_Variant_Count"; - public static final String TUMOR_VARIANT_COUNT = "Tumor_Variant_Count"; - public static final String NORMAL_PAIRED_END_READ_COUNT = "Normal_Paired_End_Read_Count"; - public static final String TUMOR_PAIRED_END_READ_COUNT = "Tumor_Paired_End_Read_Count"; - public static final String NORMAL_SPLIT_READ_COUNT = "Normal_Split_Read_Count"; - public static final String TUMOR_SPLIT_READ_COUNT = "Tumor_Split_Read_Count"; - public static final String ANNOTATION = "Annotation"; - public static final String BREAKPOINT_TYPE = "Breakpoint_Type"; - public static final String CONNECTION_TYPE = "Connection_Type"; - public static final String EVENT_INFO = "Event_Info"; - public static final String VARIANT_CLASS = "Class"; - public static final String LENGTH = "SV_Length"; - public static final String COMMENTS = "Comments"; - public static final String DRIVER_FILTER = "cbp_driver"; - public static final String DRIVER_FILTER_ANNOTATION = "cbp_driver_annotation"; - public static final String DRIVER_TIERS_FILTER = "cbp_driver_tiers"; - public static final String DRIVER_TIERS_FILTER_ANNOTATION = "cbp_driver_tiers_annotation"; - public static final String SV_STATUS = "SV_Status"; - - public StructuralVariantUtil(String line, Set namespaces) { - this.columnIndexMap = new HashMap(); - String[] headerParts = line.trim().split("\t"); - this.namespaceColumnParser = new NamespaceColumnParser(namespaces, headerParts); - // Find header indices - for (int i=0; i> namespaces = this.namespaceColumnParser.parseCustomNamespaces(parts); - structuralVariant.setAnnotationJson(this.namespaceColumnParser.writeValueAsString(namespaces)); - return structuralVariant; - } - - public int getColumnIndex(String colName) { - Integer index = this.columnIndexMap.get(colName.toLowerCase()); - if (index == null) { - index = -1; - } - return index; - } - - /** - * Determines whether the structural variant record meets the minimal requirements for import. - * - * Structural variant records are valid if: - * (1) Neither Site 1 or Site 2 Ensembl transcript IDs and regions are defined in the record. - * (2) Both Site 1 and Site 2 Ensmebl transcript IDs and regions are defined in the record. - * Sample id and SV status are required fields. - * - * If a structural variant record has a mix of defined and missing values for Site 1 or Site 2 - * Ensembl transcript IDs and/or regions then the structural variant record will not be imported. - * - * Example (assuming that site 1 or site 2 hugo symbol and/or entrez id are present): - * - * Valid Record: - * Site 1 Transcript: EST0000024958 - * Site 1 Region: exon - * Site 1 Region number: 5 - * Site 2 Transcript: EST0001651651 - * Site 1 Region: exon - * Site 1 Region: 7 - * - * Valid Record: - * Site 1 Transcript: NA - * Site 1 Region: NA - * Site 1 Region number: -1 - * Site 2 Transcript: NA - * Site 2 Region: NA - * Site 2 Region number: -1 - * - * INVALID Record: - * Site 1 Transcript: EST0000024958 - * Site 1 Region: NA - * Site 1 Region number: -1 - * Site 2 Transcript: EST0001651651 - * Site 2 Region: NA - * Site 2 Region number: -1 - * - * @param record - * @return - */ - public Boolean hasRequiredStructuralVariantFields(StructuralVariant record) { - if (record.getSampleId() == null || - record.getSampleId().equalsIgnoreCase(TabDelimitedFileUtil.NA_STRING) || - record.getSvStatus() == null || - record.getSvStatus().equalsIgnoreCase(TabDelimitedFileUtil.NA_STRING)) { - return false; - } - - return ((record.getSite1EntrezGeneId() != null && record.getSite1EntrezGeneId() != Long.MIN_VALUE) || !TabDelimitedFileUtil.NA_STRING.equalsIgnoreCase(record.getSite1HugoSymbol()) || (record.getSite2EntrezGeneId() != null && record.getSite2EntrezGeneId() != Long.MIN_VALUE) || !TabDelimitedFileUtil.NA_STRING.equalsIgnoreCase(record.getSite2HugoSymbol())); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/SurvivalAttributeUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/SurvivalAttributeUtil.java deleted file mode 100644 index 01c700b476c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/SurvivalAttributeUtil.java +++ /dev/null @@ -1,90 +0,0 @@ -package org.mskcc.cbio.portal.util; - -public class SurvivalAttributeUtil { - - private static final String ZERO_PREFIX = "0:"; - private static final String ONE_PREFIX = "1:"; - - public enum SurvivalStatusAttributes { - OS_STATUS("OS_STATUS"), - DFS_STATUS("DFS_STATUS"); - - String attributeId; - SurvivalStatusAttributes(String attrId) { - attributeId = attrId; - } - - static public boolean has(String value) { - try { - return valueOf(value) != null; - } - catch (IllegalArgumentException x) { - return false; - } - } - - String getAttributeId() { - return attributeId; - } - } - - public enum SurvivalStatusMappingOneValues { - DECEASED("DECEASED"), - RECURRED_PROGRESSED("Recurred/Progressed"), - RECURRED("Recurred"), - PROGRESSED("Progressed"); - - String statusValue; - SurvivalStatusMappingOneValues(String value) { - statusValue = value; - } - - static public boolean has(String value) { - try { - value = value.replaceAll("[/]", "_"); - return valueOf(value.toUpperCase()) != null; - } - catch (IllegalArgumentException x) { - return false; - } - } - - String getStatusValue() { - return statusValue; - } - } - - public enum SurvivalStatusMappingZeroValues { - LIVING("LIVING"), - DISEASEFREE("DiseaseFree"); - - String statusValue; - SurvivalStatusMappingZeroValues(String value) { - statusValue = value; - } - - static public boolean has(String value) { - try { - return valueOf(value.toUpperCase()) != null; - } - catch (IllegalArgumentException x) { - return false; - } - } - - String getStatusValue() { - return statusValue; - } - } - - public static String getModifiedAttributeValue(String value) { - if (SurvivalStatusMappingOneValues.has(value)) { - return ONE_PREFIX + value; - } else if (SurvivalStatusMappingZeroValues.has(value)) { - return ZERO_PREFIX + value; - } else { - // value is new format or is one of the NULL_VALUES - return value; - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/TransactionalScripts.java b/core/src/main/java/org/mskcc/cbio/portal/util/TransactionalScripts.java deleted file mode 100644 index 7c044d9f319..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/TransactionalScripts.java +++ /dev/null @@ -1,80 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import java.lang.reflect.Constructor; -import java.lang.reflect.InvocationTargetException; -import java.lang.reflect.Method; -import java.util.ArrayList; -import java.util.List; - -import org.apache.commons.lang3.ArrayUtils; - -public class TransactionalScripts implements Runnable { - - public List scripts = new ArrayList(); - - /** - * Primary constructor, used to specify scripts through dependency injection. - * @param scripts - */ - public TransactionalScripts(List scripts) { - this.scripts = scripts; - } - - public List getScripts() { - return scripts; - } - - public void setScripts(List scripts) { - this.scripts = scripts; - } - - @Override - public void run() { - for(String[] command : getScripts()) { - // The first element in the array will be a class name. We should - // locate the class and the call the static main method with the - // rest of the arguments. Oh, and there needs to be a whole bunch - // of error handling. - - String className = command[0]; - String args[] = (String[])ArrayUtils.remove(command, 0); - - // Now let's look for the class - Class scriptClass; - try { - scriptClass = getClass().getClassLoader().loadClass(className); - } catch (ClassNotFoundException e) { - throw new RuntimeException("Failed to load script class: " + className, e); - } - - try { - Constructor[] ctors = scriptClass.getDeclaredConstructors(); - Constructor ctor = null; - for (int i = 0; i < ctors.length; i++) { - ctor = ctors[i]; - if (ctor.getGenericParameterTypes().length == 1) - break; - } - - Runnable newInstance = (Runnable) ctor.newInstance(new Object[] { args }); - newInstance.run(); - } catch (InstantiationException e) { - e.printStackTrace(System.err); - throw new RuntimeException("Can't find instantiate runner for: " + className, e); - } catch (SecurityException e) { - e.printStackTrace(System.err); - throw new RuntimeException("Can't access run() method in: " + className, e); - } catch (IllegalAccessException e) { - e.printStackTrace(System.err); - throw new RuntimeException("Invalid access to run() method in: " + className, e); - } catch (IllegalArgumentException e) { - e.printStackTrace(System.err); - throw new RuntimeException("Invalid arguments for run() method in: " + className, e); - } catch (InvocationTargetException e) { - e.printStackTrace(System.err); - throw new RuntimeException("Can't call run() method in: " + className, e); - } - } - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/UrlParamFilter.java b/core/src/main/java/org/mskcc/cbio/portal/util/UrlParamFilter.java deleted file mode 100644 index a7bf34bd214..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/UrlParamFilter.java +++ /dev/null @@ -1,37 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import org.springframework.stereotype.Component; - -import javax.servlet.*; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.security.InvalidParameterException; - -@Component("urlParamFilter") -public class UrlParamFilter implements Filter { - @Override - public void init(FilterConfig filterConfig) throws ServletException { - // Nothing to init (Sonar asks you to comment if you leave a method empty) - } - - @Override - public final void doFilter( - final ServletRequest servletRequest, - final ServletResponse servletResponse, - final FilterChain chain - ) throws IOException, ServletException { - HttpServletRequest request = (HttpServletRequest) servletRequest; - HttpServletResponse response = (HttpServletResponse) servletResponse; - if (request.getParameter("configUrl") != null && !request.getParameter("configUrl").isEmpty()) { - throw new InvalidParameterException(); - } else { - chain.doFilter(request, response); - } - } - - @Override - public final void destroy() { - // Nothing to destroy (Sonar asks you to comment if you leave a method empty) - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/UrlUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/UrlUtil.java deleted file mode 100644 index a6e92fed225..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/UrlUtil.java +++ /dev/null @@ -1,145 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.servlet.QueryBuilder; -import org.mskcc.cbio.portal.servlet.ServletXssUtil; -import org.owasp.validator.html.PolicyException; - -import javax.servlet.http.HttpServletRequest; -import java.net.URLEncoder; -import java.util.Enumeration; - -/** - * URL Utility Class. - */ -public class UrlUtil { - - /** - * Gets Current URL. - * - * @param request HttpServletRequest. - * @return Current URL - */ - public static String getCurrentUrl (HttpServletRequest request) { - Enumeration paramEnum = request.getParameterNames(); - StringBuffer buf = new StringBuffer(request.getAttribute - (QueryBuilder.ATTRIBUTE_URL_BEFORE_FORWARDING) + "?"); - while (paramEnum.hasMoreElements()) { - String paramName = (String) paramEnum.nextElement(); - String values[] = request.getParameterValues(paramName); - if (values != null && values.length >0) { - for (int i=0; i0) - { - for (int i=0; i. -*/ - -package org.mskcc.cbio.portal.util; - -import javax.servlet.http.HttpServletRequest; - -/** - * Provides Basic Information about a User, as Stored in the Session. - * Also provides methods for logging/logging out, as defined within the session. - * - * @author Ethan Cerami. - */ -public class UserInfo { - private static final String EMAIL = "email_address"; // key for email param stored in session - - /** - * Is the User Currently Authenticated? Determined via Session. - * - * @param request HttpServletRequest. - * @return boolean - */ - public static boolean isUserAuthenticated(HttpServletRequest request) { - String email = getEmailId(request); - if (email != null) { - return true; - } else { - return false; - } - } - - /** - * Gets the User's Email ID. Determined via Session. - * - * @param request HttpServletRequest. - * @return email address. - */ - public static String getEmailId (HttpServletRequest request) { - return (String) request.getSession().getAttribute(EMAIL); - } - - /** - * Registers the Users Session as Authenticated. - * - * @param emailAddress Email Address. - * @param request HttpServletRequest. - */ - public static void loginUser(String emailAddress, - HttpServletRequest request) { - request.getSession().setAttribute(EMAIL, emailAddress); - } - - /** - * Logs out the User. - * - * @param request HttpServletRequest. - */ - public static void logoutUser(HttpServletRequest request) { - request.getSession().removeAttribute(EMAIL); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ValueParser.java b/core/src/main/java/org/mskcc/cbio/portal/util/ValueParser.java deleted file mode 100644 index f6151754531..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ValueParser.java +++ /dev/null @@ -1,608 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.HashMap; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ComparisonOp; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ConcreteDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ContinuousDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneWithSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticDataTypes; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticTypeLevel; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintGeneDisplaySpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintSpecification; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ParsedFullDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ResultDataTypeSpec; -import org.mskcc.cbio.portal.model.GeneticAlterationType; - -/** - * Takes a String encoding of genetic data created by ProfileMerger, and some - * definition of the threshold for up or down regulation of mRNA expression and - * an optional filter for which datatypes and levels should be viewed, and then - * exports a set of boolean functions, such as isCnaAmplified() or - * isCnaHomozygouslyDeleted(), which indicates whether the genetic data meets - * the boolean characteristics. - *

    - * DEFAULT_THRESHOLD: The default definition of mRNA thresholds is provided by a - * zScore, symmetric about 0. The optional filter is provided as an - * OncoPrintGeneDisplaySpec, which would typically be the parsed output of a - * filter defined in the OncoPrintSpec language. If the filter defines any - * inequalities on mRNA expression then it overrides the zScore thresholds. - *

    - * Could be modified to implement GeneticEvent. - * @author Arthur Goldberg - */ -public class ValueParser { - public static final String MUTATION_VALUE_ZERO = "0"; - public static final String MUTATION_VALUE_NAN = "NaN"; - private String originalValue; - private HashMap datatypeToValueMap; - private OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec; - - /** - * Create a ValueParser. mRNA Expression, Copy Number Alterations and - * Mutations will be viewable. Since only zScoreThreshold is provided, we use - * it to set mRNA thresholds for over and under expression. - * - * @param str - * @param zScoreThreshold - */ - public ValueParser(String str, double zScoreThreshold) { - // TODO: get rid of this as soon as we can stop the calls - // isCaseEpigeneticallySilenced() - // ProfileData.getValueParsed() - - // create a 'default' OncoPrintGeneDisplaySpec, that displays all types - // and thresholds high and low expression values - // with zScoreThreshold, i.e., filter mRNA<= -zScoreThreshold - // mRNA>=zScoreThreshold - if (zScoreThreshold < 0.0) { - throw new IllegalArgumentException("zScoreThreshold must be greater than 0"); - } - ParsedFullDataTypeSpec aParsedFullDataTypeSpec = - createParsedFullDataTypeSpecFromZscore(zScoreThreshold); - - // add other data types - aParsedFullDataTypeSpec.addSpec(new ConcreteDataTypeSpec("CNA")); - aParsedFullDataTypeSpec.addSpec(new ConcreteDataTypeSpec("Mutation")); - - this.theOncoPrintGeneDisplaySpec = aParsedFullDataTypeSpec.cleanUpInput(); - parseValue(str); - } - - /** - * create a ParsedFullDataTypeSpec with symmetric zScore thresholds. - * - * @param zScoreThreshold - * @return - */ - private ParsedFullDataTypeSpec createParsedFullDataTypeSpecFromZscore(double zScoreThreshold) { - ParsedFullDataTypeSpec aParsedFullDataTypeSpec = new ParsedFullDataTypeSpec(); - aParsedFullDataTypeSpec.addSpec(new ContinuousDataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), (float) -zScoreThreshold)); - aParsedFullDataTypeSpec.addSpec(new ContinuousDataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), (float) zScoreThreshold)); - return aParsedFullDataTypeSpec; - } - - /** - * Create a ValueParser that filters according to a given - * OncoPrintGeneDisplaySpec. - * - * @param str - * @param theOncoPrintGeneDisplaySpec - */ - public ValueParser(String str, OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec) { - this.theOncoPrintGeneDisplaySpec = theOncoPrintGeneDisplaySpec; - parseValue(str); - // System.err.println(this.toString()); - } - - /** - * Generate a ValueParser. As a convenience, take a gene name and an - * OncoPrintSpecification, and find the gene in the OncoPrintSpecification. - * - * TODO: replace this: it's basically wrong because the same gene may - * occur in multiple times in an OncoPrintSpecification - * - * @param gene - * @param value - * @param zScoreThreshold - * @param theOncoPrintSpecification - * @return null if the gene cannot be found in theOncoPrintSpecification, - * otherwise a new ValueParser, as constructed by ValueParser(String - * value, double zScoreThreshold, OncoPrintGeneDisplaySpec - * theOncoPrintGeneDisplaySpec) for theOncoPrintGeneDisplaySpec for - * the gene in theOncoPrintSpecification. - */ - static public ValueParser generateValueParser(String gene, String value, double zScoreThreshold, - double rppaScoreThreshold, OncoPrintSpecification theOncoPrintSpecification) { - - // check that gene can be found - GeneWithSpec theGeneWithSpec = theOncoPrintSpecification.getGeneWithSpec(gene); - if (null == theGeneWithSpec) { - // System.err.println("Cannot find " + gene + " in theOncoPrintSpecification."); - return null; - } - return new ValueParser(value, zScoreThreshold, rppaScoreThreshold, - theGeneWithSpec.getTheOncoPrintGeneDisplaySpec()); - } - - // TODO: create a constructor that doesn't take a zScoreThreshold, to be used - // when the caller knows that the OncoPrintGeneDisplaySpec - // contains an Expression inequality - - /** - * Given genetic data in value, instantiate a ValueParser that combines a - * zScore threshold and an OncoPrintGeneDisplaySpec to determine which data - * types and levels should be displayed, and what defines over and under mRNA - * expression. See the DEFAULT_THRESHOLD logic in the class java doc. - *

    - * TODO: create a value parser constructor that doesn't need a - * zScoreThreshold, for use by code that has an OncoPrintGeneDisplaySpec with - * a mRNA inequality - * - * @param value - * @param zScoreThreshold - * @param theOncoPrintGeneDisplaySpec - */ - public ValueParser(String value, double zScoreThreshold, double rppaScoreThreshold, - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec) { - this.theOncoPrintGeneDisplaySpec = theOncoPrintGeneDisplaySpec; - determineExpressionThresholds(GeneticDataTypes.Expression, zScoreThreshold); - determineExpressionThresholds(GeneticDataTypes.RPPA, rppaScoreThreshold); - parseValue(value); - } - - private void determineExpressionThresholds(GeneticDataTypes theGeneticDataType, double zScoreThreshold) { - // if theOncoPrintGeneDisplaySpec shows Expression and does not define an - // inequality on Expression ... - // then use the zScore to determine Expression thresholds - ResultDataTypeSpec theResultDataTypeSpec = theOncoPrintGeneDisplaySpec - .getResultDataTypeSpec(theGeneticDataType); - if (null != theResultDataTypeSpec && null == - theResultDataTypeSpec.getCombinedLesserContinuousDataTypeSpec() - && null == theResultDataTypeSpec.getCombinedGreaterContinuousDataTypeSpec()) { - - ParsedFullDataTypeSpec aParsedFullDataTypeSpec = - createParsedFullDataTypeSpecFromZscore(zScoreThreshold); - - // combine this with the given OncoPrintGeneDisplaySpec - ResultDataTypeSpec expressionResultDataTypeSpec = aParsedFullDataTypeSpec.cleanUpInput() - .getResultDataTypeSpec(theGeneticDataType); - theOncoPrintGeneDisplaySpec.setResultDataTypeSpec(theGeneticDataType, - expressionResultDataTypeSpec); - } - } - - private void parseValue(String str) { - this.originalValue = str; - datatypeToValueMap = new HashMap(); - String fields[] = str.split(ProfileMerger.VALUE_SEPARATOR); - for (String field : fields) { - // just split on the 1st colon, so that colon(s) within the value remain intact - String parts[] = field.split(ProfileMerger.TYPE_VALUE_SEPARATOR, 2); - // TODO: throw exception if this conditional isn't true - if (parts != null && parts.length == 2) { - String name = parts[0]; - String value = parts[1]; - datatypeToValueMap.put(name, value); - } - } - } - - public String getOriginalValue() { - return originalValue; - } - - /** - * does a discrete type have the given level? given the params, report - * whether this genetic value has theGeneticTypeLevel, and that level is not - * filtered by the OncoPrintSpec. - * - * @param theDiscreteGeneticDataType - * @param theGeneticTypeLevel - * @return true, if the value for the given GeneticDataTypes has the given - * level, and the spec filter passes that level - */ - public boolean isDiscreteTypeThisLevel(GeneticDataTypes theDiscreteGeneticDataType, - GeneticTypeLevel theGeneticTypeLevel) { - /* - * basic idea: if the measurement is the right value, and it passes - * through the filter then yes, else no. - */ - - // check that theDiscreteGeneticDataType is not Mutation - if (theDiscreteGeneticDataType.equals(GeneticDataTypes.Mutation)) { - throw new IllegalArgumentException("isDiscreteTypeThisLevel cannot handle Mutations"); - } - - // check that theDiscreteGeneticDataType is a discrete datatype - if (!theDiscreteGeneticDataType.getTheDataTypeCategory().equals(DataTypeCategory.Discrete)) { - throw new IllegalArgumentException("theDiscreteGeneticDataType is not a " + - "discrete datatype"); - } - - // TODO: make sure getValue() returns the right kind of int code - String value = getValue(convertGeneticType(theDiscreteGeneticDataType)); - if (null == value) { - return false; - } - - GeneticTypeLevel theMeasuredGeneticTypeLevel; - try { - theMeasuredGeneticTypeLevel = GeneticTypeLevel - .convertCode(theDiscreteGeneticDataType, Integer.parseInt(value)); - } catch (NumberFormatException e) { - return false; - } catch (IllegalArgumentException e) { - return false; - } - if (!theMeasuredGeneticTypeLevel.equals(theGeneticTypeLevel)) { - return false; - } - return this.theOncoPrintGeneDisplaySpec.satisfy(theDiscreteGeneticDataType, - theGeneticTypeLevel); - } - - /** - * return true if the measurement in theDiscreteGeneticDataType is altered, - * that is, if it is one of the levels defined by the - * OncoPrintGeneDisplaySpec. Note that this does not work for mutation, - * because its values are not numeric codes. - * - * @param theDiscreteGeneticDataType - * @return - */ - public boolean isDiscreteTypeAltered(GeneticDataTypes theDiscreteGeneticDataType) { - // TODO: this is public only so it can be tested; todo: restructure tests - // so they can access package level methods - // consider approach in - // http://junit.sourceforge.net/doc/faq/faq.htm#organize_1, and perhaps - // http://www.artima.com/suiterunner/private3.html for testing private - // methods - - /* - * basic idea: false if there is no data or the measurement is NaN - * otherwise, true if the measurement satisfies the - * OncoPrintGeneDisplaySpec - */ - - // check that theDiscreteGeneticDataType is not Mutation - if (theDiscreteGeneticDataType.equals(GeneticDataTypes.Mutation)) { - throw new IllegalArgumentException("isDiscreteTypeAltered cannot handle Mutations"); - } - - // check that theDiscreteGeneticDataType is a discrete datatype - if (!theDiscreteGeneticDataType.getTheDataTypeCategory().equals(DataTypeCategory.Discrete)) { - throw new IllegalArgumentException("theDiscreteGeneticDataType is not a " + - "discrete datatype"); - } - - // TODO: make sure getValue() returns the right kind of int code - String measurement = getValue(convertGeneticType(theDiscreteGeneticDataType)); - if (null == measurement) { - return false; - } - - GeneticTypeLevel theMeasuredGeneticTypeLevel; - try { - theMeasuredGeneticTypeLevel = GeneticTypeLevel.convertCode(theDiscreteGeneticDataType, - Integer.parseInt(measurement)); - } catch (NumberFormatException e) { - return false; - } catch (IllegalArgumentException e) { - return false; - } - return this.theOncoPrintGeneDisplaySpec.satisfy(theDiscreteGeneticDataType, - theMeasuredGeneticTypeLevel); - } - - /** - * - * @return the CNA level of this ValueParser, or null if none. - */ - public GeneticTypeLevel getCNAlevel() { - for (GeneticTypeLevel theGeneticTypeLevel : GeneticTypeLevel.values()) { - if (theGeneticTypeLevel.getTheGeneticDataType().equals(GeneticDataTypes.CopyNumberAlteration)) { - if (isDiscreteTypeThisLevel(GeneticDataTypes.CopyNumberAlteration, theGeneticTypeLevel)) { - return theGeneticTypeLevel; - } - } - } - return null; - } - - // I'd prefer to just export getCNAlevel(), etc., but I guess - // these are helpful for some callers - public boolean isCnaAmplified() { - return isDiscreteTypeThisLevel(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Amplified); - } - - public boolean isCnaGained() { - return isDiscreteTypeThisLevel(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Gained); - } - - public boolean isCnaDiploid() { - return isDiscreteTypeThisLevel(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Diploid); - } - - public boolean isCnaHemizygouslyDeleted() { - return isDiscreteTypeThisLevel(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HemizygouslyDeleted); - } - - public boolean isCnaHomozygouslyDeleted() { - return isDiscreteTypeThisLevel(GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HomozygouslyDeleted); - } - - // general case for continuous types - private boolean doesContinuousValueExceedThreshold(GeneticDataTypes - theContinuousGeneticDataType, Direction theDirection) { - /* - * if the measurement is available and it passes through the filter (which - * checks the threshold) then yes else no - */ - - // check that theContinuousGeneticDataType is a continuous datatype - if (!theContinuousGeneticDataType.getTheDataTypeCategory().equals( - DataTypeCategory.Continuous)) { - throw new IllegalArgumentException("theContinuousGeneticDataType is " + - "not a continuous datatype"); - } - - String value = getValue(convertGeneticType(theContinuousGeneticDataType)); - // out.println(value); - if (null == value) { - // out.println("no value"); - return false; - } - float measuredValue; - try { - measuredValue = Float.parseFloat(value); - } catch (NumberFormatException e) { - // out.println(value + " not float"); - return false; - } - // out.println(measuredValue); - - return this.theOncoPrintGeneDisplaySpec.satisfy(theContinuousGeneticDataType, - measuredValue, theDirection); - } - - public boolean isMRNAWayUp() { - return doesContinuousValueExceedThreshold(GeneticDataTypes.Expression, Direction.higher); - } - - public boolean isMRNAWayDown() { - return doesContinuousValueExceedThreshold(GeneticDataTypes.Expression, Direction.lower); - } - - public boolean isRPPAWayUp() { - return doesContinuousValueExceedThreshold(GeneticDataTypes.RPPA, Direction.higher); - } - - public boolean isRPPAWayDown() { - return doesContinuousValueExceedThreshold(GeneticDataTypes.RPPA, Direction.lower); - } - - /** - * a special case, because mutation values can take any of { NaN, [CnnnD], 1} - * where the NaN indicates no mutation and the latter two indicates a - * mutation. A [CnnnD] is the standard amino acid encoding of a mutation. - * - * @return true if the gene was mutated and mutations were to be shown - */ - public boolean isMutated() { - // don't use isDiscreteTypeThisLevel because of mutation's complex values - String mutationValue = datatypeToValueMap.get(GeneticAlterationType.MUTATION_EXTENDED.name()); - if (mutationValue != null) { - // TODO: fix: this is a little dangerous, because it means that ANY - // value for mutation other than these will be reported as a mutation; - // I would prefer a positive test - if (mutationValue.equalsIgnoreCase(MUTATION_VALUE_NAN) - || mutationValue.equals(MUTATION_VALUE_ZERO)) { - return false; - } else { - return theOncoPrintGeneDisplaySpec.satisfy(GeneticDataTypes.Mutation, - GeneticTypeLevel.Mutated) - || - theOncoPrintGeneDisplaySpec.satisfy(GeneticDataTypes.Mutation, - mutationValue); - } - } - return false; - } - - /** - * Routine used to get amino acid encoding of mutation. Motivation was - * to provide amino acid change to MakeOncoPrint via GeneticEvent instead of - * ExtendedMutationMap. - */ - public String getMutationType() { - String toReturn = datatypeToValueMap.get(GeneticAlterationType.MUTATION_EXTENDED.name()); - return (toReturn == null) ? "Mutation cannot be determined" : toReturn; - } - - /** - * report on whether the gene was sequenced, as based on the mutation data, - * irrespective of what the oncoPrint filter says. - * - * @return - */ - public boolean wasSequenced() { - if (isMutated()) { - return true; - } else { - String mutationValue = datatypeToValueMap.get(GeneticAlterationType.MUTATION_EXTENDED.name()); - return mutationValue != null && !(mutationValue.equalsIgnoreCase(MUTATION_VALUE_NAN)); - } - } - - /** - * returns true if the gene has any of the alterations defined in the - * OncoPrintGeneDisplaySpec. - * - * @return - */ - public boolean isGeneAltered() { - return isMutated() || this.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration) || - isMRNAWayUp() || isMRNAWayDown() || isRPPAWayUp() || isRPPAWayDown(); - } - - // TODO: combine the union of all genetic types into one, include all, like - // GeneticAlterationType.METHYLATION_BINARY - private static GeneticAlterationType convertGeneticType(GeneticDataTypes theDiscreteGeneticDataType) { - switch (theDiscreteGeneticDataType) { - case CopyNumberAlteration: - return GeneticAlterationType.COPY_NUMBER_ALTERATION; - case Expression: - return GeneticAlterationType.MRNA_EXPRESSION; - case RPPA: - return GeneticAlterationType.PROTEIN_ARRAY_PROTEIN_LEVEL; - case Methylation: - return GeneticAlterationType.METHYLATION; - case Mutation: - return GeneticAlterationType.MUTATION_EXTENDED; - } - // unreachable code; keep compiler happy - // TODO: throw an exception - return null; - } - - private String getValue(GeneticAlterationType geneticAlterationType) { - return datatypeToValueMap.get(geneticAlterationType.name()); - } - - public String getCnaValue() { - return datatypeToValueMap.get(GeneticAlterationType.COPY_NUMBER_ALTERATION.name()); - } - - public String getUnparsedMRNAValue() { - return datatypeToValueMap.get(GeneticAlterationType.MRNA_EXPRESSION.name()); - } - - public String getUnparsedMethylationValue() { - return datatypeToValueMap.get(GeneticAlterationType.METHYLATION.name()); - } - - public String getUnparsedProteinLevelValue() { - return datatypeToValueMap.get(GeneticAlterationType.PROTEIN_LEVEL.name()); - } - - public String getUnparsedPhosphorylationValue() { - return datatypeToValueMap.get(GeneticAlterationType.PHOSPHORYLATION.name()); - } - - @Override - public String toString() { - // TODO: also return string of this.datatypeToValueMap - return this.originalValue + "\n" + this.theOncoPrintGeneDisplaySpec.toString(); - } - - /** - * next 3 methods determine glyphs for the heatmap. - *

    - * TODO: these belong in heatmap.java, when it gets made. - * - * this provides the HTML for the location of the mutation glyph - */ - public String getMutationGlyph() { - if (this.isMutated()) { - return ""; - } else { - if (this.wasSequenced()) { - return ""; - } else { - return ""; - } - } - } - - /** - * - * @param geneWithScore - * @return - */ - public String getMRNAGlyph() { - if (this.isMRNAWayUp()) { - return ""; - } - if (this.isMRNAWayDown()) { - if (this.isCnaAmplified()) { - return ""; - } else { - return ""; - } - } - return ""; - } - - /** - * - * @param geneWithScore - * @return - */ - public String getRPPAGlyph() { - if (this.isRPPAWayUp()) { - return ""; - } - if (this.isRPPAWayDown()) { - if (this.isCnaAmplified()) { - return ""; - } else { - return ""; - } - } - return ""; - } - - public String getCopyNumberStyle() { - GeneticTypeLevel theGeneticTypeLevel = this.getCNAlevel(); - if (null != theGeneticTypeLevel) { - switch (theGeneticTypeLevel) { - case Amplified: - return "amp_2"; - case Gained: - return "gained_2"; - case Diploid: - return "no_change"; - case HemizygouslyDeleted: - return "hetloss_2"; - case HomozygouslyDeleted: - return "del_2"; - } - } - return "no_change"; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/VersionUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/VersionUtil.java deleted file mode 100644 index c81eeb2172c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/VersionUtil.java +++ /dev/null @@ -1,46 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.lang.StringBuilder; -import org.mskcc.cbio.portal.dao.DaoInfo; - -public class VersionUtil { - public static void main(String[] args) { - StringBuilder logMessageBuilder = new StringBuilder(117); - int versionCheck = DaoInfo.checkVersion(logMessageBuilder) ? 0 : 1; - System.out.println(logMessageBuilder.toString()); - System.out.flush(); - System.exit(versionCheck); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/WebserviceParserUtils.java b/core/src/main/java/org/mskcc/cbio/portal/util/WebserviceParserUtils.java deleted file mode 100644 index 4627a30022e..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/WebserviceParserUtils.java +++ /dev/null @@ -1,199 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.servlet.WebService; -import org.mskcc.cbio.portal.web_api.ProtocolException; - -import java.util.*; -import java.util.regex.Pattern; -import javax.servlet.http.HttpServletRequest; - -/** - * - * @author jgao - */ -public final class WebserviceParserUtils { - - private WebserviceParserUtils() {} - - /** - * Grabs the appropriate stuff from a request and returns a list of case_ids - * @param request - * @return - * @throws ProtocolException - * @throws DaoException - */ - public static ArrayList getSampleIds(HttpServletRequest request) throws ProtocolException, - DaoException { - String samples = request.getParameter(WebService.CASE_LIST); - String sampleSetId = request.getParameter(WebService.CASE_SET_ID); - String sampleIdsKey = request.getParameter(WebService.CASE_IDS_KEY); - - if (sampleIdsKey != null) - { - samples = SampleSetUtil.getSampleIds(sampleIdsKey); - } - - ArrayList sampleList = new ArrayList(); - if (sampleSetId != null && !(sampleSetId.equals("-1"))) { - DaoSampleList dao = new DaoSampleList(); - SampleList selectedSampleList = dao.getSampleListByStableId(sampleSetId); - if (selectedSampleList == null) { - throw new ProtocolException("Invalid " + WebService.CASE_SET_ID + ": " + sampleSetId + "."); - } - sampleList = selectedSampleList.getSampleList(); - } - else if (samples != null) { - for (String _sample : samples.split("[\\s,]+")) { - _sample = _sample.trim(); - if (_sample.length() == 0) continue; - sampleList.add(_sample); - } - } - else if (samples != null) { // todo: this is a hack, samples is just another word for patients - return new ArrayList(Arrays.asList(samples.split(" "))); - } - else { - throw new ProtocolException(WebService.CASE_SET_ID + " or " + WebService.CASE_LIST + " must be specified."); - } - return sampleList; - } - - /** - * Given an HttpServletRequest, determine all cancer_study_ids associated with it. - * cancer study identifiers can be inferred from profile_ids, case_list_ids, or case_ids. - * this returns the set of ALL POSSIBLE cancer study identifiers - * - * @param request - * @return the cancer_study_ids associated with the request, which will be empty - * if none can be determined; or empty set if a problem arises. - * @throws DaoException - * @throws ProtocolException - */ - public static HashSet getCancerStudyIDs(HttpServletRequest request) - throws DaoException, ProtocolException { - - HashSet cancerStudies = new HashSet(); - - // a CANCER_STUDY_ID is explicitly provided, as in getGeneticProfiles, getCaseLists, etc. - // make sure the cancer_study_id provided in the request points to a real study - String studyIDstring = getCancerStudyId(request); - if (studyIDstring != null) { - if (DaoCancerStudy.doesCancerStudyExistByStableId(studyIDstring)) { - cancerStudies.add(studyIDstring); - } - - return cancerStudies; - } - - // a genetic_profile_id is explicitly provided, as in getProfileData - if (null != request.getParameter(WebService.GENETIC_PROFILE_ID)) { - ArrayList geneticProfileIds = getGeneticProfileId(request); - for (String geneticProfileId : geneticProfileIds) { - - // that's the point of this code?? -// if (geneticProfileId == null) { -// return cancerStudies; -// } - - GeneticProfile aGeneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(geneticProfileId); - if (aGeneticProfile != null && - DaoCancerStudy.doesCancerStudyExistByInternalId(aGeneticProfile.getCancerStudyId())) { - cancerStudies.add(DaoCancerStudy.getCancerStudyByInternalId - (aGeneticProfile.getCancerStudyId()).getCancerStudyStableId()); - } - } - - return cancerStudies; - } - - // a patient_set_id is explicitly provided, as in getProfileData, getMutationData, getClinicalData, etc. - String sampleSetId = request.getParameter(WebService.CASE_SET_ID); - if (sampleSetId != null) { - DaoSampleList aDaoSampleList = new DaoSampleList(); - SampleList aSampleList = aDaoSampleList.getSampleListByStableId(sampleSetId); - - if (aSampleList != null && DaoCancerStudy.doesCancerStudyExistByInternalId(aSampleList.getCancerStudyId())) { - cancerStudies.add(DaoCancerStudy.getCancerStudyByInternalId - (aSampleList.getCancerStudyId()).getCancerStudyStableId()); - } - - return cancerStudies; - } - - return cancerStudies; - } - - // TODO: rename TO getGeneticProfileId, as the return value is PLURAL - public static ArrayList getGeneticProfileId(HttpServletRequest request) throws ProtocolException { - String geneticProfileIdStr = request.getParameter(WebService.GENETIC_PROFILE_ID); - // Split on white space or commas - Pattern p = Pattern.compile("[,\\s]+"); - String geneticProfileIds[] = p.split(geneticProfileIdStr); - ArrayList geneticProfileIdList = new ArrayList(); - for (String geneticProfileId : geneticProfileIds) { - geneticProfileId = geneticProfileId.trim(); - geneticProfileIdList.add(geneticProfileId); - } - return geneticProfileIdList; - } - - - /** - * Get Cancer Study ID in a backward compatible fashion. - */ - public static String getCancerStudyId(HttpServletRequest request) { - String cancerStudyId = request.getParameter(WebService.CANCER_STUDY_ID); - if (cancerStudyId == null || cancerStudyId.length() == 0) { - cancerStudyId = request.getParameter(WebService.CANCER_TYPE_ID); - } - return cancerStudyId; - } - - /** - * Get the return format requested - */ - - public static String getFormat(HttpServletRequest request) { - String format = request.getParameter(WebService.FORMAT); - - return format == null ? format : format.toLowerCase(); - } - - public static String getCaseSetId(HttpServletRequest request) { - return request.getParameter(WebService.CASE_SET_ID); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/XDebug.java b/core/src/main/java/org/mskcc/cbio/portal/util/XDebug.java deleted file mode 100644 index a70c5250c88..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/XDebug.java +++ /dev/null @@ -1,204 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.util.ArrayList; -import java.util.Date; - -import javax.servlet.http.HttpServletRequest; - -/** - * Encapsulates Real-time debugging information. - * XDebug provides a simple facility for logging debug messages, - * and recording debug parameters. Results of XDebug are conditionally - * displayed at the bottom of the JSP page. - */ -public class XDebug { - private ArrayList messages; - private ArrayList parameters; - private Date startTime; - private Date stopTime; - private long timeElapsed; - private HttpServletRequest request; - - /** - * Constructor. - */ - public XDebug() { - messages = new ArrayList(); - parameters = new ArrayList(); - startTime = null; - stopTime = null; - timeElapsed = -1; - - } - - // FOR ACCESS CONTROL, so CgdsProtocol can get the session; bit of a hack - public XDebug(HttpServletRequest request) { - this(); - this.request = request; - - // FOR ACCESS CONTROL, DEBUGGING - if(UserInfo.isUserAuthenticated(request)) { - this.logMsg( this, "Logged in with: " + UserInfo.getEmailId(request)); - }else{ - this.logMsg( this, "Not logged in." ); - } - - } - - public HttpServletRequest getRequest() { - return request; - } - - /** - * Logs a new message with the specified color code. - * - * @param caller object that is making the log request - * @param msg message to log - * @param color color of message, e.g. "RED, "GREEN" - */ - public void logMsg(Object caller, String msg, String color) { - Class callerClass = caller.getClass(); - XDebugMessage message = new XDebugMessage(callerClass.getName(), msg, color); - messages.add(message); - } - - /** - * Logs a new message. - * - * @param caller object that is making the log request - * @param msg message to log - */ - public void logMsg(Object caller, String msg) { - logMsg(caller, msg, "black"); - } - - /** - * Adds a new String Parameter. - * - * @param type parameter type code, e.g. COOKIE_TYPE, ENVIRONMENT_TYPE - * @param name parameter name - * @param value parameter String value - */ - public void addParameter(int type, String name, String value) { - XDebugParameter param = new XDebugParameter(type, name, value); - parameters.add(param); - } - - /** - * Adds a new integer Parameter. - * - * @param type parameter type code, e.g. COOKIE_TYPE, ENVIRONMENT_TYPE - * @param name parameter name - * @param value parameter integer value - */ - public void addParameter(int type, String name, int value) { - XDebugParameter param = new XDebugParameter(type, name, value); - parameters.add(param); - } - - /** - * Adds a new boolean Parameter. - * - * @param type parameter type code, e.g. COOKIE_TYPE, ENVIRONMENT_TYPE - * @param name parameter name - * @param value parameter boolean value - */ - public void addParameter(int type, String name, boolean value) { - XDebugParameter param = new XDebugParameter(type, name, value); - parameters.add(param); - } - - /** - * Gets all Debug Messages. - * - * @return Vector of XDebugMessage objects - */ - public ArrayList getDebugMessages() { - return messages; - } - - /** - * Gets all Parameters. - * - * @return Vector of XDebugParameter objects - */ - public ArrayList getParameters() { - return parameters; - } - - /** - * Starts the internal timer. - */ - public void startTimer() { - this.startTime = new Date(); - } - - /** - * Stops the internal timer. - */ - public void stopTimer() { - this.stopTime = new Date(); - if (startTime != null) { - this.timeElapsed = stopTime.getTime() - startTime.getTime(); - } - } - - /** - * Gets the total time elapsed (in milliseconds). - * - * @return totalTimeElapsed (ms) - */ - public long getTimeElapsed() { - return timeElapsed; - } - - /** - * Gets Complete Log. - * Useful for command line utilities. - * - * @return Complete Log. - */ - public String getCompleteLog() { - StringBuffer log = new StringBuffer(); - if (messages == null || messages.size() == 0) { - log.append("No Log Messages"); - } - for (int i = 0; i < messages.size(); i++) { - XDebugMessage msg = messages.get(i); - log.append(msg.getMessage() + "\n"); - } - return log.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/XDebugMessage.java b/core/src/main/java/org/mskcc/cbio/portal/util/XDebugMessage.java deleted file mode 100644 index c0387f8f68a..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/XDebugMessage.java +++ /dev/null @@ -1,101 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -/** - * Encapsulates a single XDebug log message. - * An XDebug log message consists of three parts: - *

      - *
    • name of the class that invoked the logger - *
    • the log message - *
    • color of the log message (defaults to black) - *
    - */ -public class XDebugMessage { - private String message; - private String className; - private String color; - private static final String DEFAULT_COLOR = "black"; - - /** - * Constructor. - * - * @param className name of the class that invoke the logger - * @param message the log message - */ - public XDebugMessage(String className, String message) { - this.className = className; - this.message = message; - this.color = DEFAULT_COLOR; - } - - /** - * Constructor with Color Parameter. - * - * @param className name of the class that invoke the logger - * @param message the log message - * @param color the log message color - */ - public XDebugMessage(String className, String message, String color) { - this.className = className; - this.message = message; - this.color = color; - } - - /** - * Get Debug Message. - * - * @return the log message - */ - public String getMessage() { - return message; - } - - /** - * Get Class Name. - * - * @return the class name of the object that invoked the logger - */ - public String getClassName() { - return className; - } - - /** - * Get Color. - * - * @return color of the log message - */ - public String getColor() { - return color; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/XDebugParameter.java b/core/src/main/java/org/mskcc/cbio/portal/util/XDebugParameter.java deleted file mode 100644 index c3920a99108..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/XDebugParameter.java +++ /dev/null @@ -1,180 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -/** - * Encapsulates a single XDebug Parameter name/value. - * The following parameter types are supported:
      - *
    • COOKIE_TYPE: HTTP Cookies
    • USER_TYPE: Any user supplied parameters - *
    • INTERNAL_TYPE: Any internal parameters, such as timers. - *
    • ENVIRONMENT_TYPE: Any Environment Variables - *
    • HTTP_TYPE: Any HTTP parameters, such as protocol type - *
    • HTTP_HEADER_TYPE: Any HTTP Headers
    - */ -public class XDebugParameter { - /** - * HTTP Cookie Type. - */ - public static final int COOKIE_TYPE = 0; - - /** - * User Type; for example: form parameters. - */ - public static final int USER_TYPE = 1; - - /** - * Internal Type; for example: performance metrics. - */ - public static final int INTERNAL_TYPE = 2; - - /** - * Environment Variable Type; for example: Servlet Port #. - */ - public static final int ENVIRONMENT_TYPE = 3; - - /** - * HTTP Type; for example: Get vs Post. - */ - public static final int HTTP_TYPE = 4; - - /** - * HTTP Header Type; for example: Browser Client information. - */ - public static final int HTTP_HEADER_TYPE = 5; - - /** - * User Session Type. - */ - public static final int REQUEST_ATTRIBUTE_TYPE = 6; - - /** - * User Session Type. - */ - public static final int SESSION_TYPE = 7; - - /** - * Servlet Context Type. - */ - public static final int SERVLET_CONTEXT_TYPE = 8; - - private String name; - private String value; - private int type; - private final String[] paramTypes = - {"Cookie", "User Parameter", "Internal", "Environment", - "HTTP", "HTTP Header", "Internal Request Attribute", "Session", - "Servlet Context"}; - - private static final String UNDEFINED = "Undefined"; - - /** - * Constructor for String parameter. - * - * @param type parameter type, e.g. COOKIE_TYPE, ENVIRONMENT_TYPE - * @param name parameter name - * @param value parameter String value - */ - public XDebugParameter(int type, String name, String value) { - this.type = type; - this.name = name; - this.value = value; - } - - /** - * Constructor for integer parameter. - * - * @param type parameter type, e.g. COOKIE_TYPE, ENVIRONMENT_TYPE - * @param name parameter name - * @param value parameter integer value - */ - public XDebugParameter(int type, String name, int value) { - this.type = type; - this.name = name; - this.value = Integer.toString(value); - } - - /** - * Constructor for boolean parameter. - * - * @param type parameter type, e.g. COOKIE_TYPE, ENVIRONMENT_TYPE - * @param name parameter name - * @param value parameter String value - */ - public XDebugParameter(int type, String name, boolean value) { - this.type = type; - this.name = name; - this.value = Boolean.toString(value); - } - - /** - * Get Parameter Name. - * - * @return name of parameter - */ - public String getName() { - return name; - } - - /** - * Get Parameter Value. - * - * @return value of the parameter - */ - public String getValue() { - return value; - } - - /** - * Get Parameter Type Name. - * - * @return parameter type name, e.g. "Cookie", Internal", etc. - */ - public String getTypeName() { - String typeName = null; - try { - typeName = paramTypes[type]; - } catch (ArrayIndexOutOfBoundsException e) { - typeName = UNDEFINED; - } - return typeName; - } - - /** - * Get Parameter Type. - * - * @return parameter type integer code, e.g. COOKIE_TYPE, INTERNAL_TYPE - */ - public int getType() { - return type; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/XssFilter.java b/core/src/main/java/org/mskcc/cbio/portal/util/XssFilter.java deleted file mode 100644 index 1618eb66326..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/XssFilter.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import javax.servlet.*; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletRequestWrapper; -import java.io.IOException; - -/** - * Filter that wraps an underlying request. This is intended to filter - * all input request - * - *

    This filter should be configured only for those operations that use a - * file upload request. - */ -public class XssFilter implements Filter -{ - public void init(FilterConfig aConfig) throws ServletException - { - //do nothing - } - - public void destroy() { - //do nothing - } - - public void doFilter(ServletRequest aRequest, - ServletResponse aResponse, - FilterChain aChain) - throws IOException, ServletException - { - HttpServletRequest request = (HttpServletRequest) aRequest; - XssRequestWrapper wrapper = new XssRequestWrapper(request); - aChain.doFilter(wrapper, aResponse); - } - -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/XssRequestWrapper.java b/core/src/main/java/org/mskcc/cbio/portal/util/XssRequestWrapper.java deleted file mode 100644 index d9e259434cb..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/XssRequestWrapper.java +++ /dev/null @@ -1,90 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.servlet.ServletXssUtil; -import org.owasp.validator.html.PolicyException; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletRequestWrapper; - -/** - * Wrapper designed for all requests. - * - *

    This class uses the Apache Commons - * File Upload tool. - * The generous Apache License will very likely allow you to use it in your - * applications as well. - */ -public class XssRequestWrapper extends HttpServletRequestWrapper -{ - private static Logger LOG = LoggerFactory.getLogger(XssRequestWrapper.class); - protected ServletXssUtil xssUtil; - - public XssRequestWrapper(HttpServletRequest request) { - super(request); - - try - { - xssUtil = ServletXssUtil.getInstance(); - } - catch (PolicyException e) - { - // TODO log? - xssUtil = null; - } - } - - public String getParameter(String name) - { - String parameter = super.getParameter(name); - - LOG.debug("XssRequestWrapper.getParameter(" + name + "): '" + parameter + "'"); - String clean = xssUtil.getCleanerInput(parameter); - LOG.debug("XssRequestWrapper.getParameter(" + name + "): cleaned = '" + clean + "'"); - - return clean; - } - - public String getRawParameter(String name) - { - String raw = super.getParameter(name); - LOG.debug("XssRequestWrapper.getRawParameter(" + name + "): cleaned = '" + raw + "'"); - return raw; - } - - // TODO also overwrite getParameterValues & getAttribute method? -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/ZScoreUtil.java b/core/src/main/java/org/mskcc/cbio/portal/util/ZScoreUtil.java deleted file mode 100644 index bf514f499b8..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/ZScoreUtil.java +++ /dev/null @@ -1,86 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.servlet.QueryBuilder; -import org.mskcc.cbio.portal.model.GeneticProfile; - -import javax.servlet.http.HttpServletRequest; -import java.util.ArrayList; -import java.util.HashSet; - -// TODO: perhaps delete this class -public class ZScoreUtil { - public static final double Z_SCORE_THRESHOLD_DEFAULT = 2; - public static final double RPPA_SCORE_THRESHOLD_DEFAULT = 2; - public static final double OUTLIER_THRESHOLD_DEFAULT = 1; - - public static double getZScore(HashSet geneticProfileIdSet, - ArrayList profileList, HttpServletRequest request) { - double zScoreThreshold = ZScoreUtil.Z_SCORE_THRESHOLD_DEFAULT; - - // If user has selected an outlier mRNA expression profile, - // switch to OUTLIER_THRESHOLD_DEFAULT. - if (GeneticProfileUtil.outlierExpressionSelected(geneticProfileIdSet, profileList)) { - zScoreThreshold = OUTLIER_THRESHOLD_DEFAULT; - } else { - String zScoreThesholdStr = request.getParameter(QueryBuilder.Z_SCORE_THRESHOLD); - if (zScoreThesholdStr != null) { - try { - zScoreThreshold = Double.parseDouble(zScoreThesholdStr); - - // take absolute value - if( zScoreThreshold < 0.0 ){ - zScoreThreshold = -zScoreThreshold; - } - - } catch (NumberFormatException e) { - } - } - } - return zScoreThreshold; - } - - public static double getRPPAScore(HttpServletRequest request) { - String rppaScoreStr = request.getParameter(QueryBuilder.RPPA_SCORE_THRESHOLD); - if (rppaScoreStr == null) { - return RPPA_SCORE_THRESHOLD_DEFAULT; - } else { - try { - return Double.parseDouble(rppaScoreStr); - } catch (NumberFormatException e) { - return RPPA_SCORE_THRESHOLD_DEFAULT; - } - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/internal/AccessControlImpl.java b/core/src/main/java/org/mskcc/cbio/portal/util/internal/AccessControlImpl.java deleted file mode 100644 index 3a2d3e4547b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/util/internal/AccessControlImpl.java +++ /dev/null @@ -1,165 +0,0 @@ -/* - * Copyright (c) 2015 - 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util.internal; - -// imports -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.web_api.ProtocolException; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.userdetails.UserDetails; -import org.springframework.security.core.context.SecurityContextHolder; -import org.springframework.security.authentication.AnonymousAuthenticationToken; -import org.springframework.stereotype.Component; - -import java.util.*; - -/** - * Utilities for managing access control. - * - * @author Benjamin Gross - */ -@Component -public class AccessControlImpl implements AccessControl { - - // ref to log - private static Logger log = LoggerFactory.getLogger(AccessControlImpl.class); - - /** - * Gets Cancer Studies. Used by QueryBuilder. - * - * @return List - * @throws DaoException Database Error. - * @throws ProtocolException Protocol Error. - * - * We use @PostFilter annotation to remove elements - * in the return list inaccessible to the user. - */ - public List getCancerStudies() throws DaoException, ProtocolException { - - if (log.isDebugEnabled()) { - log.debug("getCancerStudies(), getting accessible cancer studies."); - } - - // get list of all cancer studies - List allCancerStudies = DaoCancerStudy.getAllCancerStudies(); - - // sort the list - Collections.sort(allCancerStudies, new CancerStudiesComparator()); - - // Then, insert "All" Cancer Types at beginning //TODO - fix this! It conflicts with ALL (Acute Lymphoid Leukemia)! - ArrayList finalCancerStudiesList = new ArrayList(); - String allCancerStudyTitle = (GlobalProperties.usersMustAuthenticate()) ? - "All Authorized Cancer Studies" : "All Cancer Studies"; - CancerStudy allCancerStudy = new CancerStudy(allCancerStudyTitle, allCancerStudyTitle, - "all", "all", true); - finalCancerStudiesList.add(allCancerStudy); - finalCancerStudiesList.addAll(allCancerStudies); - - if (finalCancerStudiesList.size() > 1) { - return finalCancerStudiesList; - } else { - throw new ProtocolException("No cancer studies accessible; "+ - "either provide credentials to access private studies, " + - "or ask administrator to load public ones.\n"); - } - } - - /** - * Return true if the user can access the study, false otherwise. - * - * @param stableStudyId - * @return List - * @throws DaoException - * - * We use @PostFilter rather than @PreAuthorize annotation to provide - * permission evaluation on this cancer study so that we can process - * invalid permissions via QueryBuilder.validateForm(). If we use @PreAuthorize, - * thread execution does not return from this method call if a user has invalid permissions. - */ - public List isAccessibleCancerStudy(String stableStudyId) throws DaoException { - - if (log.isDebugEnabled()) { - log.debug("isAccessibleCancerStudy(), stableStudyId: " + stableStudyId); - } - - // get cancer study by stable id - List toReturn = new ArrayList(); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(stableStudyId); - if (cancerStudy != null) { - toReturn.add(cancerStudy); - } - - // outta here - return toReturn; - } - - public UserDetails getUserDetails() - { - if (GlobalProperties.usersMustAuthenticate()) { - Authentication auth = SecurityContextHolder.getContext().getAuthentication(); - if (auth == null) { - String errorMessage = "Possible configuration error detected: authorization=true but no authentication found. " - + "If authentication is turned off, authorization should be set to false"; - log.error(errorMessage); - throw new RuntimeException(errorMessage); - } - return !(auth instanceof AnonymousAuthenticationToken) ? (UserDetails)auth.getPrincipal() : null; - } - return null; - } -} - -/** - * Compares Cancer Studies, so that we can sort them alphabetically. - */ -class CancerStudiesComparator implements Comparator { - - /** - * Compare two cancer studies. - * @param o First Cancer Study. - * @param o1 Second Cancer Study. - * @return int indicating name sort order. - */ - public int compare(Object o, Object o1) { - CancerStudy study0 = (CancerStudy) o; - CancerStudy study1 = (CancerStudy) o1; - return study0.getName().compareTo(study1.getName()); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/validate/ValidateGistic.java b/core/src/main/java/org/mskcc/cbio/portal/validate/ValidateGistic.java deleted file mode 100644 index dcd68874a45..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/validate/ValidateGistic.java +++ /dev/null @@ -1,158 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.validate; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Gistic; - -import java.util.ArrayList; - -// todo: later this can be refactored into a factory method. -public class ValidateGistic { - private static final Logger logger = LoggerFactory.getLogger(ValidateGistic.class); - - /** - * Validates a gistic bean object according to some basic "business logic". - * @param gistic - * @throws validationException - */ - public static void validateBean(Gistic gistic) throws validationException { - - int chromosome = gistic.getChromosome(); - int peakStart = gistic.getPeakStart(); - int peakEnd = gistic.getPeakEnd(); - double qValue = gistic.getqValue(); - ArrayList genes_in_ROI = gistic.getGenes_in_ROI(); - - if (chromosome < 1 || chromosome > 22) { - throw new validationException("Invalid chromosome: " + chromosome); - } - - if (peakStart <= 0) { - throw new validationException("Invalid peak start: " + peakStart); - } - - if (peakEnd <= 0) { - throw new validationException("Invalid peak end: " + peakEnd); - } - - if (peakEnd <= peakStart) { - throw new validationException("Peak end is <= peak start: (start=" + peakStart + ", end=" + peakEnd + ")"); - } - - if (qValue < 0 || qValue > 1) { - throw new validationException("Invalid qValue=" + qValue); - } - - if (genes_in_ROI.isEmpty()){ - throw new validationException("No genes in ROI"); - } - - // todo: how do you validate ampdel? - } - - /** - * Checks to make sure that we know all the fields that we are getting. - * @param fields - * @throws validationException - */ - - public static void validateFieldNames_tabularFile(String[] fields) throws validationException { - int fields_len = fields.length; - - for (int i = 0; i < fields_len; i+=1) { - // each field should be one of the following - if (!(fields[i].equals("chromosome") - || fields[i].equals("peak_start") - || fields[i].equals("peak_end") - || fields[i].equals("genes_in_region") - || fields[i].equals("genes_in_peak") - || fields[i].equals("n_genes_on_chip") - || fields[i].equals("genes_on_chip") - || fields[i].equals("top 3") - || fields[i].equals("n_genes_in_region") - || fields[i].equals("n_genes_in_peak") - || fields[i].equals("region_start") - || fields[i].equals("region_end") - || fields[i].equals("enlarged_peak_start") - || fields[i].equals("enlarged_peak_end") - || fields[i].equals("index"))) - { -// System.out.println(fields.toString()); - throw new validationException(fields[i]); - } - } - } - - /** - * Checks to make sure that we know all the fields that we are getting. - * @param cols - * @throws validationException - */ - public static void validateNonTabularRow(String[] cols) throws validationException { - int cols_len = cols.length; - - String field_name = cols[0]; - - for (int i = 0; i < cols_len; i+=1) { - // each field should be one of the following - if (!((field_name.equals("q value") - || field_name.equals("residual q value")) - || field_name.equals("genes in wide peak") - || field_name.equals("cytoband") - || field_name.equals("") // likely to actually contain a gene - || field_name.equals("wide peak boundaries"))) { - { - throw new validationException(field_name); - } - } - } - } - - /** - * Validates that two files are either both amplified for both deleted - * @param ampdel1 ampdel from one gistic file - * @param ampdel2 ampdel from another gistic file - * @throws validationException - */ - public static void validateAmpdels(boolean ampdel1, boolean ampdel2) throws validationException { - - if (ampdel1 != ampdel2) { - String x = ampdel1 == Gistic.AMPLIFIED ? "Amplified" : "Deleted"; - String y = ampdel2 == Gistic.AMPLIFIED ? "Amplified" : "Deleted"; - throw new validationException(x + " " + y); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/validate/validationException.java b/core/src/main/java/org/mskcc/cbio/portal/validate/validationException.java deleted file mode 100644 index 0a665aa8029..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/validate/validationException.java +++ /dev/null @@ -1,43 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.validate; - -public class validationException extends Exception { - /** - * Throws a data validation exception. Data can be, for example, a bean or a line from a data file. - * @param param - */ - public validationException(Object param) { - super(param.toString()); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/ConnectionManager.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/ConnectionManager.java deleted file mode 100644 index b0a8a9aa1a5..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/ConnectionManager.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.apache.commons.httpclient.HttpClient; -import org.apache.commons.httpclient.MultiThreadedHttpConnectionManager; -import org.apache.commons.httpclient.params.HttpClientParams; -import org.apache.http.params.CoreConnectionPNames; - -/** - * Singleton Instance of the Connection Manager. - */ -public class ConnectionManager { - private static MultiThreadedHttpConnectionManager connectionManager = null; - - /** - * Gets the Global Connection Manager. - * - * @return MultiThreadedHttpConnectionManager Object. - */ - public static MultiThreadedHttpConnectionManager getConnectionManager() { - if (connectionManager == null) { - connectionManager = new MultiThreadedHttpConnectionManager(); - connectionManager.getParams().setDefaultMaxConnectionsPerHost(10); - connectionManager.getParams().setConnectionTimeout(5000); - } - return connectionManager; - } - - /** - * Get a HttpClient - * @param timeOut milliseconds - * @return - */ - public static HttpClient getHttpClient(int timeOut) { - if (timeOut<=0) { - return new HttpClient(getConnectionManager()); - } else { - HttpClientParams params = new HttpClientParams(); - params.setIntParameter(CoreConnectionPNames.CONNECTION_TIMEOUT, timeOut); - params.setIntParameter(CoreConnectionPNames.SO_TIMEOUT, timeOut); - return new HttpClient(params, getConnectionManager()); - } - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetClinicalData.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetClinicalData.java deleted file mode 100644 index 3d4877624f1..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetClinicalData.java +++ /dev/null @@ -1,273 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import java.util.*; - -import org.json.simple.JSONArray; -import org.json.simple.JSONObject; -import org.mskcc.cbio.portal.dao.DaoClinicalAttributeMeta; -import org.mskcc.cbio.portal.dao.DaoClinicalData; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.mskcc.cbio.portal.model.ClinicalData; -import org.mskcc.cbio.portal.model.Patient; - -/** - * Utility class to get clinical data - */ -public class GetClinicalData { - private static final String NA = "NA"; - private static final String TAB = "\t"; - - /** - * Gets clinical data for specified cases. - * - * @param setOfCaseIds Case IDs. - * @return an ArrayList of Survival Objects - * @throws DaoException, as of August 2011 GetClinicalData has direct access to DAO Objects. - */ - public static List getClinicalData(int cancerStudyId, HashSet setOfCaseIds) throws DaoException { - if (setOfCaseIds != null && setOfCaseIds.size() > 0) { - return DaoClinicalData.getSurvivalData(cancerStudyId, setOfCaseIds); - } else { - return Collections.emptyList(); - } - } - - /** - * takes an object (Clinical or ClinicalAttribute) and - * converts it to a map (JSONObject) - * - * @param clinical - * @return - */ - public static JSONObject reflectToMap(ClinicalData clinical) { - JSONObject map = new JSONObject(); - - map.put("attr_id", clinical.getAttrId()); - map.put("attr_val", clinical.getAttrVal()); - //TODO: at some point we may want to incorporate the cancer_study_id -// map.put("cancer_study_id", Integer.toString(clinical.getCancerStudyId())); - map.put("sample", clinical.getStableId()); - - return map; - } - - public static JSONObject reflectToMap(ClinicalAttribute clinicalAttribute) { - JSONObject map = new JSONObject(); - - map.put("attr_id", clinicalAttribute.getAttrId()); - map.put("datatype", clinicalAttribute.getDatatype()); - map.put("description", clinicalAttribute.getDescription()); - map.put("display_name", clinicalAttribute.getDisplayName()); - - return map; - } - - public static JSONArray clinicals2JSONArray(List clinicals) { - JSONArray toReturn = new JSONArray(); - for (ClinicalData c : clinicals) { - toReturn.add(reflectToMap(c)); - } - return toReturn; - } - - /** - * Returns a single row the database - * - * @param cancerStudyId - * @param sampleId - * @param attrId - */ - public static JSONObject getJsonDatum(int cancerStudyId, String sampleId, String attrId) throws DaoException { - ClinicalAttribute attr = DaoClinicalAttributeMeta.getDatum(attrId, cancerStudyId); - List data = DaoClinicalData.getSampleAndPatientData(cancerStudyId, Collections.singletonList(sampleId), attr); - if (data.isEmpty()) { - return new JSONObject(); - } - return reflectToMap(data.get(0)); - } - - public static String getTxtDatum(int cancerStudyId, String sampleId, String attrId) throws DaoException { - ClinicalAttribute attr = DaoClinicalAttributeMeta.getDatum(attrId, cancerStudyId); - List data = DaoClinicalData.getSampleAndPatientData(cancerStudyId, Collections.singletonList(sampleId), attr); - if (data.isEmpty()) { - return ""; - } - - ClinicalData c = data.get(0); - return "" + c.getStableId() + "\t" + c.getAttrId() + "\t" + c.getAttrVal(); - } - - /** - * Creates a json object with data and attributes fields that correspond to the data - * in the clinicals and the set of attributes that exist in the clinicals, filtered - * by the defined cancer study ID. - * @param clinicals - * @param cancer_study_id - * @return - * @throws DaoException - */ - public static JSONObject generateJson(List clinicals, Integer cancer_study_id) throws DaoException { - Set attrs = new HashSet(); - JSONObject toReturn = new JSONObject(); - JSONArray data = new JSONArray(); - - Set attrIds = new HashSet(); - for (ClinicalData c : clinicals) { -// if (!c.getAttrVal().equalsIgnoreCase(NA)) { // filter out NAs - data.add(reflectToMap(c)); - attrIds.add(c.getAttrId()); -// } - } - - for (ClinicalAttribute attr : DaoClinicalAttributeMeta.getDatum(attrIds, cancer_study_id)) { - attrs.add(reflectToMap(attr)); - } - - Iterator attrsIt = attrs.iterator(); - JSONArray attributes = new JSONArray(); - while (attrsIt.hasNext()) { - attributes.add(attrsIt.next()); - } - - toReturn.put("data", data); - toReturn.put("attributes", attributes); - - return toReturn; - } - /** - * - * @param cancerStudyId - * @return An object with 2 fields: - * -- data: array of object literals corresponding to rows in the database - * -- attributes: array of clinical attribute metadatas (object literals) that appear in the data - * @throws DaoException - */ - public static JSONObject getJSON(int cancerStudyId, List sampleIds) throws DaoException { - List clinicals = DaoClinicalData.getSampleAndPatientData(cancerStudyId, sampleIds); - - return generateJson(clinicals, cancerStudyId); - } - - public static JSONObject getJSON(int cancerStudyId, List sampleIds, String attrId) throws DaoException { - - ClinicalAttribute attr = DaoClinicalAttributeMeta.getDatum(attrId, cancerStudyId); - List clinicals = DaoClinicalData.getSampleAndPatientData(cancerStudyId, sampleIds, attr); - - return generateJson(clinicals, cancerStudyId); - } - - - - - private static final Map clinicalAttributeRank = new HashMap(); - static { - clinicalAttributeRank.put(null, -1); - clinicalAttributeRank.put("CASE_ID", -1); // EXCLUDE - clinicalAttributeRank.put("PATIENT_ID", 1); - } - private static int getClinicalAttributeRank(String attrId) { - Integer r = clinicalAttributeRank.get(attrId); - if (r==null) { - return 1000; - } - return r; - } - - /** - * Takes a list of clinicals and turns them into a tab-delimited, new-line ended string. - * - * invariants : 1. they all must have the same sampleId - * 2. no repeats - * - * @param clinicals - * @return - */ - public static String getTxt(int cancerStudyId, List sampleIds) throws DaoException { - List allClinicals = DaoClinicalData.getSampleAndPatientData(cancerStudyId, sampleIds); - - TreeSet headers = new TreeSet(new Comparator() { - @Override - public int compare(String str1, String str2) { - Integer r1 = getClinicalAttributeRank(str1); - Integer r2 = getClinicalAttributeRank(str2); - if (r1.equals(r2)) { - return str1.compareTo(str2); - } - - return r1.compareTo(r2); - } - }); - Map> sampleId2Clinical = new HashMap>(); - for (ClinicalData c : allClinicals) { - if (getClinicalAttributeRank(c.getAttrId())<0) { - continue; - } - - Map got = sampleId2Clinical.get(c.getStableId()); - - if (got == null) { - got = new HashMap(); - sampleId2Clinical.put(c.getStableId(), got); - } - - got.put(c.getAttrId(),c); - headers.add(c.getAttrId()); - } - - StringBuilder sb = new StringBuilder(); - sb.append("CASE_ID"); - for (String h : headers) { - sb.append('\t').append(h); - } - sb.append('\n'); - - for (Map.Entry> entry : sampleId2Clinical.entrySet()) { - String sampleId = entry.getKey(); - sb.append(sampleId); - Map value = entry.getValue(); - for (String h : headers) { - sb.append('\t'); - ClinicalData cd = value.get(h); - if (cd!=null) { - sb.append(cd.getAttrVal()); - } - } - sb.append('\n'); - } - - return sb.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetGeneticProfiles.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetGeneticProfiles.java deleted file mode 100644 index 4cb117a3583..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetGeneticProfiles.java +++ /dev/null @@ -1,101 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import java.util.ArrayList; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.GeneticProfile; - -/** - * Web API for Getting Genetic Profiles. - * - * @author Ethan Cerami. - */ -public class GetGeneticProfiles { - - /** - * Gets all Genetic Profiles associated with a specific cancer study. - * - * @param cancerStudyId Cancer Study ID. - * @return ArrayList of GeneticProfile Objects. - * @throws DaoException Remote / Network IO Error. - */ - public static ArrayList getGeneticProfiles(String cancerStudyId) - throws DaoException { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); - if (cancerStudy != null) { - return DaoGeneticProfile.getAllGeneticProfiles(cancerStudy.getInternalId()); - } else { - return new ArrayList(); - } - } - - /** - * Get the genetic profiles for a cancer study - * - * @param cancerStudyStableId Stable Identifier for Cancer Study. - * @return Genetic Profiles Table Output. - * @throws DaoException Database Exception. - */ - public static String getGeneticProfilesAsTable(String cancerStudyStableId) throws DaoException { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId); - StringBuilder buf = new StringBuilder(); - if (cancerStudy != null) { - int cancerStudyInternalId = cancerStudy.getInternalId(); - ArrayList list = - DaoGeneticProfile.getAllGeneticProfiles(cancerStudyInternalId); - if (list.size() > 0) { - - buf.append("genetic_profile_id\tgenetic_profile_name\tgenetic_profile_description\t" + - "cancer_study_id\t" + - "genetic_alteration_type\tshow_profile_in_analysis_tab\n"); - for (GeneticProfile geneticProfile : list) { - buf.append(geneticProfile.getStableId()).append("\t"); - buf.append(geneticProfile.getProfileName()).append("\t"); - buf.append(geneticProfile.getProfileDescription()).append("\t"); - buf.append(geneticProfile.getCancerStudyId()).append("\t"); - buf.append(geneticProfile.getGeneticAlterationType().name()).append("\t"); - buf.append(geneticProfile.showProfileInAnalysisTab()).append("\n"); - } - } else { - buf.append("Error: No genetic profiles available for: ") - .append(cancerStudyStableId).append(".\n"); - return buf.toString(); - } - } - return buf.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetMutSig.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetMutSig.java deleted file mode 100644 index ad180133964..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetMutSig.java +++ /dev/null @@ -1,128 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoMutSig; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.MutSig; - -import java.util.ArrayList; -import java.util.regex.Pattern; - -/** - * @author Lennart Bastian - */ -public class GetMutSig { - - private GetMutSig() { - } - - /* - * GetMutSig uses DaoMutSig to retrieve all MutSigs of a specific - * cancer study from the database, in an Arraylist. - * One option is to input only a CancerStudyId and retrieve - * the entire Gene List. - * @throws DaoException Database Error - * @returns StringBuffer - MutSig Table - */ - - public static StringBuffer getMutSig(int cancerStudy) - throws DaoException { - StringBuffer toReturn = header(new StringBuffer()); - ArrayList mutSigList = DaoMutSig.getAllMutSig(cancerStudy); - for (int i = 0; i < mutSigList.size(); i++) { - toReturn.append(parseMutSig(mutSigList.get(i))); - } - return toReturn; - } - - /* - * The second option is to input either a Gene List (foo = false) of a Q Value Threshold (foo = true) - * to retrieve only a specific number of Genes. - */ - - public static StringBuffer getMutSig(int cancerStudy, String qValueOrGeneList, Boolean qOrGene) - throws DaoException { - StringBuffer toReturn = header(new StringBuffer()); - //code for Q Value Threshold - if (qOrGene) { - ArrayList mutSigList = DaoMutSig.getAllMutSig(cancerStudy, Double.parseDouble(qValueOrGeneList)); - for (int i = 0; i < mutSigList.size(); i++) { - toReturn.append(parseMutSig(mutSigList.get(i))); - } - //code for Gene List - } else if (!qOrGene) { - Pattern p = Pattern.compile("[,\\s]+"); - String genes[] = p.split(qValueOrGeneList); - for (String gene : genes) { - gene = gene.trim(); - if (gene.length() == 0) { - continue; - } - MutSig mutSig = DaoMutSig.getMutSig(gene, cancerStudy); - toReturn.append(parseMutSig(mutSig)); - } - } - return toReturn; - } - - /* - * Splits of each individual MutSig and returns as String - */ - - private static String parseMutSig(MutSig mutSig) { - String toReturn = ""; - toReturn += Integer.toString(mutSig.getCancerType()) + "\t"; - CanonicalGene gene = mutSig.getCanonicalGene(); - toReturn += Long.toString(gene.getEntrezGeneId()) + "\t"; - toReturn += gene.getHugoGeneSymbolAllCaps() + "\t"; - toReturn += Integer.toString(mutSig.getRank()) + "\t"; - toReturn += Integer.toString(mutSig.getNumBasesCovered()) + "\t"; - toReturn += Integer.toString(mutSig.getNumMutations()) + "\t"; -// toReturn += Integer.toString(mutSig.getnVal()) + "\t"; -// toReturn += Integer.toString(mutSig.getnVer()) + "\t"; -// toReturn += Integer.toString(mutSig.getCpG()) + "\t"; -// toReturn += Integer.toString(mutSig.getCandG()) + "\t"; -// toReturn += Integer.toString(mutSig.getAandT()) + "\t"; -// toReturn += Integer.toString(mutSig.getIndel()) + "\t"; - toReturn += Float.toString(mutSig.getpValue()) + "\t"; - toReturn += Float.toString(mutSig.getqValue()) + "\n"; - return toReturn; - } - - private static StringBuffer header(StringBuffer stringBuffer){ - stringBuffer.append("Cancer\tEntrez\tHugo\tRank\tN\tn\tnVal\tnVer\tCpG\tC+G\tA+T\tINDEL\tp\tq\n"); - return stringBuffer; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetMutationData.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetMutationData.java deleted file mode 100644 index d0653071f7c..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetMutationData.java +++ /dev/null @@ -1,244 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.servlet.WebService; - -import org.apache.commons.httpclient.URI; - -import org.springframework.stereotype.Component; -import org.springframework.beans.factory.annotation.Autowired; - -import java.util.*; - -/** - * Class to get mutation data - */ -@Component -public class GetMutationData { - - public static final int GENE_SYMBOL = 0; - public static final int ID_ENTREZ_GENE = 1; - - private static final String TAB = "\t"; - - private URI uri; - private String content; - private ArrayList warningList = new ArrayList(); - - /** - * Gets MutationData Data for all specified genes in a specific genetic profile. - * - * @param profile GeneticProfile Object. - * @param geneList ArrayList of official gene symbols. - * @param sampleIdSet HashSet of Strings which are Sample Ids. - * @return ProfileData Object in an ArrayList. - * @throws DaoException, as of August 2011 GetMutationData has direct access to DAO Objects. - */ - public List getMutationData(GeneticProfile profile, - List geneList, Set sampleIdSet, XDebug xdebug) throws DaoException { - - //initialize DAO objects and ArrayLists - ArrayList mutationList = new ArrayList(); - ArrayList entrezIDList = new ArrayList(); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - //Get Genetic Profile ID from GeneticProfile Object - int GeneticProfile = profile.getGeneticProfileId(); - if (geneList.size() > 0) { - //convert HUGOGENE List to ENTREZIDGENE List - for (String gene : geneList) { - if (null != gene) { - CanonicalGene canonicalGene = daoGeneOptimized.getGene(gene); - if(null != canonicalGene){ - Long EntrezGeneID = canonicalGene.getEntrezGeneId(); - entrezIDList.add((EntrezGeneID)); - } - } - } - - List internalSampleIds = InternalIdUtil.getInternalSampleIds(profile.getCancerStudyId(), new ArrayList(sampleIdSet)); - //parse each Mutation List retrieved from DaoMutation and add to Main Mutation List - for (Long entrezID : entrezIDList) { - List tempmutationList = DaoMutation.getMutations(GeneticProfile, entrezID); - for (ExtendedMutation mutation : tempmutationList){ - // seperate out mutations for the given set of sampleIDS. - if (internalSampleIds.contains(mutation.getSampleId())) - mutationList.add(mutation); - } - - } - return mutationList; - - } - System.err.println("Invalid list of Genes entered"); - return null; - } - - /** - * Gets warnings (if triggered). - * - * @return ArrayList of Warning Strings. - */ - public ArrayList getWarnings() { - return this.warningList; - } - - /** - * Gets URI for connecting to remote server. - * - * @return URI. - */ - public URI getURI() { - return this.uri; - } - - /** - * Gets Full Content retrieved from the CGDS. - * - * @return Full Content. - */ - public String getContent() { - return this.content; - } - - public static String getProfileData(String geneticProfileId, - List targetGeneList, - List targetSampleList) throws DaoException { - - StringBuffer buf = new StringBuffer(); - - // Get the Genetic Profile - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId - (geneticProfileId); - if (geneticProfile == null) { - buf.append("No genetic profile available for ").append(WebService.GENETIC_PROFILE_ID) - .append(": ").append(geneticProfileId).append(".\n"); - return buf.toString(); - } - - List internalSampleIds = targetSampleList==null ? null : - InternalIdUtil.getInternalSampleIds(geneticProfile.getCancerStudyId(), targetSampleList); - - // Output Actual Data - List geneList = WebApiUtil.getGeneList(targetGeneList, - geneticProfile.getGeneticAlterationType(), - buf, new ArrayList()); - - // Output DATA_TYPE - buf.append("# DATA_TYPE\t ").append(geneticProfile.getProfileName()).append("\n"); - - // Ouput Column Headings - buf.append(getColumnHeaders()).append("\n"); - - // TODO get data directly from MutationDataUtils and iterate the returned data - // Iterate through all validated genes, and extract mutation data. - for (Gene gene : geneList) { - CanonicalGene canonicalGene = (CanonicalGene) gene; - List mutationList = DaoMutation.getMutations(geneticProfile.getGeneticProfileId(), - canonicalGene.getEntrezGeneId()); - for (ExtendedMutation mutation: mutationList) { - Integer sampleId = mutation.getSampleId(); - if (targetSampleList==null || internalSampleIds.contains(sampleId)) { - buf.append(canonicalGene.getEntrezGeneId()).append(TAB); - buf.append(canonicalGene.getHugoGeneSymbolAllCaps()).append(TAB); - Sample s = DaoSample.getSampleById(sampleId); - buf.append(s.getStableId()).append(TAB); - buf.append(mutation.getSequencingCenter()).append(TAB); - buf.append(mutation.getMutationStatus()).append(TAB); - buf.append(mutation.getMutationType()).append(TAB); - buf.append(mutation.getValidationStatus()).append(TAB); - buf.append(mutation.getProteinChange()).append(TAB); - buf.append(mutation.getChr()).append(TAB); - buf.append(mutation.getStartPosition()).append(TAB); - buf.append(mutation.getEndPosition()).append(TAB); - buf.append(mutation.getReferenceAllele()).append(TAB); - buf.append(mutation.getTumorSeqAllele()).append(TAB); - buf.append(getAlleleCount(mutation.getTumorRefCount())).append(TAB); - buf.append(getAlleleCount(mutation.getTumorAltCount())).append(TAB); - buf.append(getAlleleCount(mutation.getNormalRefCount())).append(TAB); - buf.append(getAlleleCount(mutation.getNormalAltCount())).append(TAB); - buf.append(geneticProfileId); - buf.append("\n"); - } - } - } - return buf.toString(); - } - - private static String getAlleleCount(Integer count) - { - if (count == null || count < 0) - { - return "NA"; - } - else - { - return count.toString(); - } - } - - private static String getColumnHeaders() - { - StringBuffer buf = new StringBuffer(); - - // TODO externalize headers to an array and pair with corresponding data fields - buf.append("entrez_gene_id").append(TAB); - buf.append("gene_symbol").append(TAB); - buf.append("case_id").append(TAB); - buf.append("sequencing_center").append(TAB); - buf.append("mutation_status").append(TAB); - buf.append("mutation_type").append(TAB); - buf.append("validation_status").append(TAB); - buf.append("amino_acid_change").append(TAB); - buf.append("functional_impact_score").append(TAB); - buf.append("xvar_link").append(TAB); - buf.append("xvar_link_pdb").append(TAB); - buf.append("xvar_link_msa").append(TAB); - buf.append("chr").append(TAB); - buf.append("start_position").append(TAB); - buf.append("end_position").append(TAB); - buf.append("reference_allele").append(TAB); - buf.append("variant_allele").append(TAB); - buf.append("reference_read_count_tumor").append(TAB); - buf.append("variant_read_count_tumor").append(TAB); - buf.append("reference_read_count_normal").append(TAB); - buf.append("variant_read_count_normal").append(TAB); - buf.append("genetic_profile_id"); - - return buf.toString(); - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetNetwork.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetNetwork.java deleted file mode 100644 index 9862fb0123f..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetNetwork.java +++ /dev/null @@ -1,78 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.graph.NetworkOfInterest; - -import java.util.ArrayList; - -/** - * Gets a Network of Interest, Based on Input Seed Gene List. - * - * @author Ethan Cerami. - */ -public class GetNetwork { - - - /** - * Gets Network of Interest, Based on Input Seed Gene List. - * - * @param targetGeneList Target Gene List. - * @return Tab-Delimited SIF Like Output. - * @throws DaoException Database Error. - * @throws ProtocolException Protocol Exception. - */ - public static String getNetwork(ArrayList targetGeneList) throws DaoException, - ProtocolException { - - // Convert Gene Symbols to Canonical Gene List. - ArrayList canonicalGeneList = new ArrayList(); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - for (String geneSymbol: targetGeneList) { - CanonicalGene canonicalGene = daoGeneOptimized.getGene(geneSymbol); - if (canonicalGene != null) { - canonicalGeneList.add(canonicalGene); - } - } - if (canonicalGeneList.isEmpty()) { - throw new ProtocolException ("You must specify at least one gene."); - } - - // Get the Network of Interest - NetworkOfInterest noi = new NetworkOfInterest(canonicalGeneList,null); - return noi.getTabDelim(); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetProfileData.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetProfileData.java deleted file mode 100644 index 0fd68552afb..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetProfileData.java +++ /dev/null @@ -1,327 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import java.io.IOException; -import java.util.*; -import org.json.simple.JSONArray; -import org.mskcc.cbio.io.WebFileConnect; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.servlet.WebService; -import org.mskcc.cbio.portal.util.*; - -/** - * Web Service to Get Profile Data. - * - * @author Ethan Cerami. - */ -public class GetProfileData { - public static final int ID_ENTREZ_GENE = 1; - public static final int GENE_SYMBOL = 0; - private String rawContent; - private String[][] matrix; - private ProfileData profileData; - private List warningList = new ArrayList(); - - /** - * Constructor. - * @param targetGeneticProfileIdList Target Genetic Profile List. - * @param targetGeneList Target Gene List. - * @param targetSampleList Target Sample List. - * @param suppressMondrianHeader Flag to suppress the mondrian header. - * @throws DaoException Database Error. - * @throws IOException IO Error. - */ - public GetProfileData (List targetGeneticProfileIdList, - List targetGeneList, - List targetSampleList, - Boolean suppressMondrianHeader) - throws DaoException, IOException { - execute(targetGeneticProfileIdList, targetGeneList, targetSampleList, suppressMondrianHeader); - } - - /** - * Constructor. - * - * @param geneticProfile Genetic Profile Object. - * @param targetGeneList Target Gene List. - * @param sampleIds White-space delimited sample IDs. - * @throws DaoException Database Error. - * @throws IOException IO Error. - */ - public GetProfileData (GeneticProfile geneticProfile, List targetGeneList, - String sampleIds) throws DaoException, IOException { - List targetGeneticProfileIdList = new ArrayList(); - targetGeneticProfileIdList.add(geneticProfile.getStableId()); - - List targetSampleList = new ArrayList(); - String sampleIdParts[] = sampleIds.split("\\s+"); - for (String sampleIdPart : sampleIdParts) { - targetSampleList.add(sampleIdPart); - } - execute(targetGeneticProfileIdList, targetGeneList, targetSampleList, true); - } - - /** - * Gets the Raw Content Generated by the Web API. - * @return Raw Content. - */ - public String getRawContent() { - return rawContent; - } - - /** - * Gets the Data Matrix Generated by the Web API. - * @return Matrix of Strings. - */ - public String[][] getMatrix() { - return matrix; - } - - /** - * Gets the Profile Data Object Generated by the Web API. - * @return ProfileData Object. - */ - public ProfileData getProfileData() { - return profileData; - } - - /** - * Gets warnings (if triggered). - * - * @return List of Warning Strings. - */ - public List getWarnings() { - return this.warningList; - } - - /** - * Executes the LookUp. - */ - private void execute(List targetGeneticProfileIdList, - List targetGeneList, List targetSampleList, - Boolean suppressMondrianHeader) throws DaoException, IOException { - this.rawContent = getProfileData (targetGeneticProfileIdList, targetGeneList, - targetSampleList, suppressMondrianHeader); - this.matrix = WebFileConnect.parseMatrix(rawContent); - - // Create the Profile Data Object - if (targetGeneticProfileIdList.size() == 1) { - String geneticProfileId = targetGeneticProfileIdList.get(0); - GeneticProfile geneticProfile = - DaoGeneticProfile.getGeneticProfileByStableId(geneticProfileId); - profileData = new ProfileData(geneticProfile, matrix); - } - } - - /** - * Gets Profile Data for Specified Target Info. - * @param targetGeneticProfileIdList Target Genetic Profile List. - * @param targetGeneList Target Gene List. - * @param targetSampleList Target Sample List. - * @param suppressMondrianHeader Flag to suppress the mondrian header. - * @return Tab Delim Text String. - * @throws DaoException Database Error. - */ - private String getProfileData(List targetGeneticProfileIdList, - List targetGeneList, - List targetSampleList, - Boolean suppressMondrianHeader) throws DaoException { - - StringBuffer buf = new StringBuffer(); - - // Validate that all Genetic Profiles are valid Stable IDs. - for (String geneticProfileId: targetGeneticProfileIdList) { - GeneticProfile geneticProfile = - DaoGeneticProfile.getGeneticProfileByStableId(geneticProfileId); - if (geneticProfile == null) { - buf.append("No genetic profile available for " + WebService.GENETIC_PROFILE_ID + ": ") - .append(geneticProfileId).append(".").append (WebApiUtil.NEW_LINE); - return buf.toString(); - } - } - // validate all genetic profiles belong to the same cancer study - if (differentCancerStudies(targetGeneticProfileIdList)) { - buf.append("Genetic profiles must come from same cancer study.").append((WebApiUtil.NEW_LINE)); - return buf.toString(); - } - int cancerStudyId = DaoGeneticProfile.getGeneticProfileByStableId(targetGeneticProfileIdList.get(0)).getCancerStudyId(); - List internalSampleIds = InternalIdUtil.getInternalSampleIds(cancerStudyId, targetSampleList); - - // Branch based on number of profiles requested. - // In the first case, we have 1 profile and 1 or more genes. - // In the second case, we have > 1 profiles and only 1 gene. - if (targetGeneticProfileIdList.size() == 1) { - String geneticProfileId = targetGeneticProfileIdList.get(0); - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(geneticProfileId); - - // Get the Gene List - List geneList = WebApiUtil.getGeneList(targetGeneList, - geneticProfile.getGeneticAlterationType(), buf, warningList); - - // Output DATA_TYPE and COLOR_GRADIENT_SETTINGS (Used by Mondrian Cytoscape PlugIn) - if (!suppressMondrianHeader) { - buf.append("# DATA_TYPE\t ").append(geneticProfile.getProfileName()).append ("\n"); - buf.append("# COLOR_GRADIENT_SETTINGS\t ").append(geneticProfile.getGeneticAlterationType().name()) - .append ("\n"); - } - - // Ouput Column Headings - buf.append ("GENE_ID\tCOMMON"); - outputRow(targetSampleList, buf); - - // Iterate through all validated genes, and extract profile data. - for (Gene gene: geneList) { - List dataRow = GeneticAlterationUtil.getGeneticAlterationDataRow(gene, - internalSampleIds, geneticProfile); - outputGeneRow(dataRow, gene, buf); - } - } else { - // Ouput Column Headings - buf.append ("GENETIC_PROFILE_ID\tALTERATION_TYPE\tGENE_ID\tCOMMON"); - outputRow(targetSampleList, buf); - - List profiles = new ArrayList(targetGeneticProfileIdList.size()); - boolean includeRPPAProteinLevel = false; - for (String gId: targetGeneticProfileIdList) { - GeneticProfile profile = DaoGeneticProfile.getGeneticProfileByStableId(gId); - profiles.add(profile); - if (profile.getGeneticAlterationType() == GeneticAlterationType.PROTEIN_ARRAY_PROTEIN_LEVEL) { - includeRPPAProteinLevel = true; - } - } - - // for rppa protein level, choose the best correlated one - if (includeRPPAProteinLevel && profiles.size()==2) { - GeneticProfile gp1, gp2; - if (profiles.get(0).getGeneticAlterationType() == GeneticAlterationType.PROTEIN_ARRAY_PROTEIN_LEVEL) { - gp1 = profiles.get(1); - gp2 = profiles.get(0); - } else { - gp1 = profiles.get(0); - gp2 = profiles.get(1); - } - - // get data of the other profile - List dataRow1 = null; - List geneList = WebApiUtil.getGeneList(targetGeneList, - gp1.getGeneticAlterationType(), buf, warningList); - - if (geneList.size() > 0) { - Gene gene = geneList.get(0); - buf.append(gp1.getStableId()).append(WebApiUtil.TAB).append(gp1.getGeneticAlterationType().name()) - .append (WebApiUtil.TAB); - dataRow1 = GeneticAlterationUtil.getGeneticAlterationDataRow(gene, - internalSampleIds, gp1); - outputGeneRow(dataRow1, gene, buf); - } - } else { - // Iterate through all genetic profiles - for (GeneticProfile geneticProfile : profiles) { - // Get the Gene List - List geneList = WebApiUtil.getGeneList(targetGeneList, - geneticProfile.getGeneticAlterationType(), buf, warningList); - - if (geneList.size() > 0) { - Gene gene = geneList.get(0); - buf.append(geneticProfile.getStableId()).append(WebApiUtil.TAB) - .append(geneticProfile.getGeneticAlterationType().name()).append(WebApiUtil.TAB); - List dataRow = GeneticAlterationUtil.getGeneticAlterationDataRow(gene, - internalSampleIds, geneticProfile); - outputGeneRow(dataRow, gene, buf); - } - } - } - } - return buf.toString(); - } - - private static boolean differentCancerStudies(List targetGeneticProfileList) - { - if (targetGeneticProfileList.size() == 1) return false; - - int firstCancerStudyId = -1; - boolean processingFirstId = true; - for (String profileId : targetGeneticProfileList) { - GeneticProfile p = DaoGeneticProfile.getGeneticProfileByStableId(profileId); - if (processingFirstId) { - firstCancerStudyId = p.getCancerStudyId(); - processingFirstId = false; - } - else if (p.getCancerStudyId() != firstCancerStudyId) { - return true; - } - } - return false; - } - - private static void outputRow(List dataValues, StringBuffer buf) { - for (String value: dataValues) { - buf.append(WebApiUtil.TAB).append (value); - } - buf.append (WebApiUtil.NEW_LINE); - } - - private static void outputGeneRow(List dataRow, Gene gene, StringBuffer buf) - throws DaoException { - if (gene instanceof CanonicalGene) { - CanonicalGene canonicalGene = (CanonicalGene) gene; - buf.append(canonicalGene.getEntrezGeneId()).append (WebApiUtil.TAB); - buf.append (canonicalGene.getHugoGeneSymbolAllCaps()); - } else if (gene instanceof MicroRna) { - MicroRna microRna = (MicroRna) gene; - buf.append("-999999").append (WebApiUtil.TAB); - buf.append (microRna.getMicroRnaId()); - } - outputRow (dataRow, buf); - } - - public JSONArray getJson() { - JSONArray toReturn = new JSONArray(); - - - List sampleIds = new ArrayList(Arrays.asList(matrix[0])); - sampleIds.subList(0,4).clear(); // remove column names and meta data - - for (String s : sampleIds) { - toReturn.add(s); - } - -// for (String s : matrix[1]) { -// toReturn.add(s); -// } - - return toReturn; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetSampleLists.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetSampleLists.java deleted file mode 100644 index 805a4d4af6b..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetSampleLists.java +++ /dev/null @@ -1,102 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import java.util.ArrayList; - -/** - * Web API for Getting Patient Lists. - * - * @author Ethan Cerami. - */ -public class GetSampleLists { - - /** - * Gets all Patient Sets Associated with a specific Cancer Study. - * - * @param cancerStudyId Cancer Study ID. - * @return ArrayList of SampleSet Objects. - * @throws DaoException Database Error. - */ - public static ArrayList getSampleLists(String cancerStudyId) - throws DaoException { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyId); - if (cancerStudy != null) { - DaoSampleList daoSampleList = new DaoSampleList(); - ArrayList sampleList = daoSampleList.getAllSampleLists(cancerStudy.getInternalId()); - return sampleList; - } else { - ArrayList sampleList = new ArrayList(); - return sampleList; - } - } - - /** - * Get Patient List for Specified Stable Cancer Study ID. - * - * @param cancerStudyStableId Stable Cancer Study ID. - * @return Table output. - * @throws DaoException Database Error. - */ - public static String getSampleListsAsTable(String cancerStudyStableId) throws DaoException { - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId(cancerStudyStableId); - StringBuilder buf = new StringBuilder(); - if (cancerStudy != null) { - int cancerStudyInternalId = cancerStudy.getInternalId(); - DaoSampleList daoSampleList = new DaoSampleList(); - ArrayList list = daoSampleList.getAllSampleLists(cancerStudyInternalId); - if (list.size() > 0) { - buf.append("case_list_id\tcase_list_name\tcase_list_description\t" - + "cancer_study_id\t" + "case_ids\n"); - for (SampleList sampleList : list) { - buf.append(sampleList.getStableId()).append("\t"); - buf.append(sampleList.getName()).append("\t"); - buf.append(sampleList.getDescription()).append("\t"); - buf.append(sampleList.getCancerStudyId()).append("\t"); - for (String aSample : sampleList.getSampleList()) { - buf.append(aSample).append(" "); - } - buf.append("\n"); - } - } else { - buf.append("Error: No case lists available for: ").append(cancerStudyStableId).append(".\n"); - return buf.toString(); - } - } - return buf.toString(); - } -} - diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetTypesOfCancer.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/GetTypesOfCancer.java deleted file mode 100644 index 34917eb0391..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/GetTypesOfCancer.java +++ /dev/null @@ -1,121 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import java.util.ArrayList; -import java.util.Comparator; -import java.util.Collections; - -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoTypeOfCancer; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.TypeOfCancer; -import org.mskcc.cbio.portal.model.CancerStudy; - -/** - * Get Types of Cancer and Cancer Studies. - * Used by the Web API. - * - * @author Ethan Cerami, Arthur Goldberg. - */ -public class GetTypesOfCancer { - - /** - * Gets all Types of Cancer. - * - * @return Tab-Delimited Text. - * @throws DaoException Database AccessException. - * @throws ProtocolException Protocol Error. - */ - public static String getTypesOfCancer() throws DaoException, ProtocolException { - ArrayList typeOfCancerList = DaoTypeOfCancer.getAllTypesOfCancer(); - StringBuilder buf = new StringBuilder(); - if (typeOfCancerList == null || typeOfCancerList.isEmpty()) { - throw new ProtocolException ("No Types of Cancer Available."); - } else { - buf.append("type_of_cancer_id\tname\n"); - for (TypeOfCancer typeOfCancer : typeOfCancerList) { - buf.append(typeOfCancer.getTypeOfCancerId()).append(WebApiUtil.TAB); - buf.append(typeOfCancer.getName()).append(WebApiUtil.NEW_LINE); - } - return buf.toString(); - } - } - - /** - * Gets all Cancer Studies. - * - * @return Tab-Delimited Text. - * @throws DaoException Database Access Error. - * @throws ProtocolException Protocol Error. - */ - public static String getCancerStudies() throws DaoException, ProtocolException { - ArrayList cancerStudyList = DaoCancerStudy.getAllCancerStudies(); - - if (cancerStudyList == null || cancerStudyList.isEmpty()) { - throw new ProtocolException ("No Cancer Studies Available."); - } else { - // Before returning the list, sort it alphabetically - Collections.sort(cancerStudyList, new CancerStudiesComparator()); - - StringBuilder buf = new StringBuilder(); - buf.append("cancer_study_id\tname\tdescription\n"); - - // Iterate through all cancer studies - for (CancerStudy cancerStudy : cancerStudyList) { - buf.append(cancerStudy.getCancerStudyStableId()).append(WebApiUtil.TAB); - buf.append(cancerStudy.getName()).append(WebApiUtil.TAB); - buf.append(cancerStudy.getDescription()).append(WebApiUtil.NEW_LINE); - } - return buf.toString(); - } - } -} - -/** - * Compares Cancer Studies, so that we can sort them alphabetically. - */ -class CancerStudiesComparator implements Comparator { - - /** - * Compare two cancer studies. - * @param o First Cancer Study. - * @param o1 Second Cancer Study. - * @return int indicating name sort order. - */ - public int compare(Object o, Object o1) { - CancerStudy study0 = (CancerStudy) o; - CancerStudy study1 = (CancerStudy) o1; - return study0.getName().compareTo(study1.getName()); - } -} \ No newline at end of file diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/ProtocolException.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/ProtocolException.java deleted file mode 100644 index 5d56027aaf6..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/ProtocolException.java +++ /dev/null @@ -1,48 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -/** - * Wrapper exception class - */ -public class ProtocolException extends Exception { - private String msg; - - public ProtocolException (String msg) { - this.msg = msg; - } - - public String getMsg() { - return msg; - } -} diff --git a/core/src/main/java/org/mskcc/cbio/portal/web_api/WebApiUtil.java b/core/src/main/java/org/mskcc/cbio/portal/web_api/WebApiUtil.java deleted file mode 100644 index 963e4bd8f93..00000000000 --- a/core/src/main/java/org/mskcc/cbio/portal/web_api/WebApiUtil.java +++ /dev/null @@ -1,114 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.HashSet; -import java.util.List; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.Gene; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.MicroRna; -import org.mskcc.cbio.portal.servlet.ServletXssUtil; -import org.mskcc.cbio.portal.util.GeneComparator; - -/** - * Utility class for web api - */ -public class WebApiUtil { - private static HashSet microRnaIdSet; - private static HashSet variantMicroRnaIdSet; - public static final String TAB = "\t"; - public static final String NEW_LINE = "\n"; - - public static List getGeneList (List targetGeneList, - GeneticAlterationType alterationType, StringBuffer warningBuffer, - List warningList) throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - ServletXssUtil xssUtil = null; - - try { - xssUtil = ServletXssUtil.getInstance(); - } - catch (Exception e) { - } - - // Iterate through all the genes specified by the client - // Genes might be specified as Integers, e.g. Entrez Gene Ids or Strings, e.g. HUGO - // Symbols or microRNA Ids or aliases. - List geneList = new ArrayList(); - for (String geneId: targetGeneList) { - Gene gene = daoGene.getNonAmbiguousGene(geneId); - if (gene == null) { - // If that fails, try as micro RNA ID. - if (geneId.startsWith("hsa")) { - if (microRnaIdSet.contains(geneId)) { - // Conditionally Expand Micro RNAs - if (alterationType == GeneticAlterationType.COPY_NUMBER_ALTERATION) { - // Option 1: Client has specified a variant ID and really wants CNA - // data for this variant - if (variantMicroRnaIdSet.contains(geneId)) { - MicroRna microRna = new MicroRna(geneId); - geneList.add(microRna); - } - } else { - MicroRna microRna = new MicroRna(geneId); - geneList.add(microRna); - } - } else { - if (xssUtil != null) { - geneId = xssUtil.getCleanerInput(geneId); - } - String msg = "# Warning: Unknown microRNA: " + geneId; - warningBuffer.append(msg).append ("\n"); - warningList.add(msg); - } - } else { - if (xssUtil != null) { - geneId = xssUtil.getCleanerInput(geneId); - } - String msg = "# Warning: Unknown gene: " + geneId; - warningBuffer.append(msg).append ("\n"); - warningList.add(msg); - } - } else { - geneList.add(gene); - } - } - Collections.sort(geneList, new GeneComparator()); - return geneList; - } -} diff --git a/core/src/main/resources/chang_hotspot.txt b/core/src/main/resources/chang_hotspot.txt deleted file mode 100644 index ab7d0c447ae..00000000000 --- a/core/src/main/resources/chang_hotspot.txt +++ /dev/null @@ -1,470 +0,0 @@ -BRAF V600 E:520|K:33|R:4|V:1 -KRAS G12 D:255|V:227|C:115|R:71|A:43|S:23|G:1|F:1 -PIK3CA H1047 R:236|L:37|Y:6|Q:4 -IDH1 R132 H:250|C:50|G:12|S:8|L:4 -NRAS Q61 R:114|K:76|L:27|H:17|P:1 -PIK3CA E545 K:251|A:9|G:8|Q:6|D:3 -PIK3CA E542 K:134|A:4|Q:3|V:2|G:2 -TP53 R273 C:119|H:103|L:22|S:5|P:4 -TP53 R248 Q:108|W:90|L:11|P:5|G:2 -KRAS G13 D:75|C:12|V:2|R:1|G:1|A:1 -KRAS Q61 H:44|R:11|K:10|L:8|P:1|E:1 -HRAS Q61 R:19|K:10|L:9|H:2 -SF3B1 K700 E:33|R:1 -CTNNB1 D32 Y:15|G:13|N:10|V:8|H:4|A:2 -CTNNB1 S33 C:16|F:13|P:12|Y:8|A:3|T:1 -PIK3CA Q546 R:20|K:15|P:7|E:2|L:1|H:1 -FBXW7 R465 C:33|H:26|P:1|L:1|G:1 -PIK3CA N345 K:36|I:3|T:2|H:1 -CTNNB1 S37 F:21|C:16|A:6|P:4|Y:3 -U2AF1 S34 F:34|Y:3 -PTEN R130 Q:40|G:28|*:16|L:5|P:4 -TP53 R175 H:143|G:7|C:4 -TP53 Y220 C:63|S:4|H:2|N:1|D:1 -TP53 H179 -TP53 H193 R:32|Y:13|L:11|P:7|D:2|N:1 -EGFR L858 R:30 -CTNNB1 T41 A:21|I:10|N:2 -H3F3A K28 M:27 -NRAS G12 D:18|C:7|V:3|S:3|A:3|R:2 -GNAS R844 C:19|H:16|L:1 -RAC1 P29 S:25|L:5|T:1 -AKT1 E17 K:49 -EGFR A289 V:17|T:6|D:3|N:1|I:1 -FBXW7 R505 G:19|C:16|L:2|H:2|S:1 -CTNNB1 G34 R:16|V:8|E:7|A:1|*:1 -APC R1450 *:37 -TP53 C176 F:26|Y:21|S:3|G:2|*:2|W:1|R:1|C:1 -TP53 G245 S:46|D:22|V:16|C:9|R:2|A:2 -CDKN2A R80 *:50|Q:1 -ERBB2 S310 F:25|Y:1 -DNMT3A R882 H:22|C:8|P:1 -CTNNB1 S45 F:11|P:10|Y:3|C:3|S:1 -SMAD4 R361 H:20|C:18|G:2|P:1 -SPOP F133 L:9|V:4|C:4|S:3|I:2 -TP53 I195 T:25|F:11|N:5|S:2|M:2 -IDH2 R172 K:12|S:3|W:2|M:1|G:1 -HRAS G13 R:11|V:9|D:2|C:2|S:1|I:1 -HRAS G12 S:10|D:8|C:3|A:2|V:1|N:1 -PIK3CA M1043 V:13|I:11|T:2|L:2 -MYD88 L273 P:15 -ERBB3 V104 M:19|L:7 -NRAS G13 D:11|R:10|V:1 -PIK3CA G118 D:24 -BRAF G469 A:9|V:6|R:4|E:2|S:1|*:1 -BRAF K601 E:12|N:2|T:1 -KRAS A146 T:24|V:3|P:1 -ERBB2 L755 S:9|M:3|W:1|P:1 -IDH2 R140 Q:19|W:1|L:1 -APC R876 *:26|Q:1 -TP53 Y126_splice -TP53 R249 S:25|M:9|G:6|W:5|T:2|K:1 -TP53 R282 W:83|G:4|Q:2|R:1|P:1 -B2M M1 I:6|V:5|L:4|T:2|R:1 -PIK3CA C420 R:17|G:1 -TP53 Y163 C:27|N:4|H:4|D:2|*:1 -STK19 D89 N:16|D:2 -POLE P286 R:14|S:1|H:1 -FGFR3 S249 C:18 -CDKN2A W110 *:26 -FGFR2 N550 K:11|H:2 -SLC27A5 T554 I:8|T:6 -EZH2 Y646 N:6|F:4|S:2|H:2 -SMTNL2 E244_splice -NFE2L2 E79 Q:9|K:6|V:2|*:2|D:1 -RIMS2 S423 S:15 -NFE2L2 D29 H:11|Y:4|N:2|G:2 -PIK3CA K111 E:12|N:8|R:1 -TP53 C238 Y:15|F:12|S:3|R:3|G:1 -PIK3CA R88 Q:40 -PIK3CA E726 K:22|A:2 -EGFR G598 V:17|A:2 -RQCD1 P131 L:13|S:1 -FLT3 D835 Y:11|E:3|H:2|V:1 -CDKN2A H83 Y:12|R:3|D:3|Q:1 -BRAF N581 S:7|T:2|I:1|H:1 -TP53 V173 L:15|M:12|G:2|A:2|E:1 -TP53 C275 Y:15|F:10|S:4|*:2|R:1 -BRAF G466 V:10|E:6|A:1 -TP53 Y205 C:19|F:3|S:2|N:2|H:2|D:2|*:1 -RRAS2 Q72 L:7|H:2 -TP53 Y234 C:23|S:2|H:2|*:2|N:1|D:1 -APC R1114 *:24 -APC R213 *:20 -PPP2R1A R183 W:14|Q:4|G:1 -NFE2L2 E82 D:7|A:2|Q:1|G:1 -RXRA S427 F:11|Y:3 -MTOR S2215 Y:8|F:5|T:1 -HIST1H3B K28 M:11|E:1 -APC Q1378 *:15 -CDKN2A R58 *:27|R:1 -PPP2R1A P179 R:12|L:1 -CREBBP R1446 C:9|L:3|H:3|G:1 -POLE V411 L:10 -EP300 D1399 N:16|Y:2 -BRAF D594 G:6|N:5|H:1 -RHOA Y42 C:7|S:2|I:1|F:1 -FBXW7 R479 Q:13|*:4|P:2|L:2|G:2|R:1 -MAP2K1 P124 S:11|L:2|Q:1|P:1 -MAP2K1 K57 N:7|T:3 -TP53 C135 Y:9|F:9|R:3|W:2|S:2|*:2|G:1 -PIK3CA E453 K:16|Q:3|D:1 -CDKN2A V51_splice -NOTCH2 R5 R:10 -ERBB2 V842 I:14 -DCAF13 T118 T:8 -NUP93 E14 K:10|G:1 -NFE2L2 T80 K:3|R:2|P:2|A:2 -FGFR3 Y375 C:8 -ATM R337 C:13|H:5 -KNSTRN S24 F:13 -NFE2L2 G81 V:3|S:3|D:2|C:2 -CTNNB1 K335 I:8|T:1 -TP53 M237 I:17|K:4|V:3 -GPRIN2 A50 A:11 -SOS1 N233 Y:7 -SMAD4 G386 D:5|V:3|S:1|C:1|A:1 -PTEN R233 *:27|Q:1 -MAPK1 E322 K:15|*:1 -INPPL1 A1185 D:8 -TP53 R196 *:61|P:6 -TP53 G266 V:16|E:14|R:12|*:4 -TP53 C242 F:13|S:5|Y:3|W:1|G:1|C:1 -ERBB3 D297 Y:9|V:1|N:1 -CDKN2A Q50 *:12|H:2|R:1|Q:1 -MYCN P44 L:9 -POM121 N94 S:7 -TP53 R213 *:86|Q:8|L:7|P:1|G:1 -TP53 Y236 C:16|*:3|N:2|D:2 -ARID1A R1989 *:17 -APC R216 *:14 -XPO1 E571 K:12|V:1|A:1 -CDKN2A P114 L:13|T:1|H:1 -MYO18A G979 G:6|A:1 -TP53 P151 S:10|H:7|T:4|R:4|A:4|F:1 -GNAQ T96 S:7 -BNC2 S575 R:7|I:1 -NFE2L2 Q26 P:2|K:2|R:1|L:1|H:1 -CDK4 R24 L:5|H:3|C:2|S:1 -LRP1 P1058 T:7|L:1 -DTD2 R6 W:11 -SMAD2 S464 *:11 -TP53 A187_splice -RHEB Y35 N:5|C:1 -HOXB2 P335 P:6 -TP53 R280 K:15|T:10|G:6|I:5|S:4|*:1 -SNRPD3 G96 V:4|S:1|R:1|C:1 -GPRIN2 T100 P:7 -ALK F1174 L:6|C:2|V:1 -MED12 L1224 F:9|V:1 -ARL16 G6 R:7 -MAGOH I137 T:6 -CCT8 I86 T:6 -CCND1 Y44 D:2|S:1|H:1|F:1|C:1|*:1 -CRNKL1 S128 F:8|S:2 -TP53 K132 N:16|R:7|E:6|T:3|Q:1|M:1 -NT5C3A D322 G:6 -EGFR L861 Q:7 -PIK3R1 M582_splice -TP53 C141 Y:10|W:6|R:2|G:2|S:1|F:1|*:1 -RIMS1 R71 G:5|R:2 -OXA1L L57 F:9 -LENG8 G377 G:6 -APC R499 *:13 -APC Q1429 *:6|R:1 -ING1 R339 *:11 -SPOP W131 G:4|S:1|R:1|C:1 -TPTE2 M41 V:8 -TRUB1 T34 P:6 -ACADS R330 H:8|C:2 -ACSBG2 I250 M:5 -SPTA1 K1732 T:7 -TP53 V274 F:7|D:5|G:4|A:4|L:1 -PTPN11 Q510 L:3|H:3|E:1 -SF3B1 N626 Y:3|H:2|D:1 -RAC1 A178 V:10 -ARIH1 A409 E:6 -KRAS G60 G:10|D:1 -TP53 V216 M:15|L:2|G:2|E:1 -PIK3R1 N564 D:6 -PIK3R1 G376 R:9 -PIK3CA Y1021 C:7|H:2 -C5orf49 K130 T:6 -NPAS1 F159 F:6|L:1 -APC R564 *:12 -NFE2L2 L30 F:3|P:2|H:2|R:1 -RAF1 S257 L:11|W:1 -TP53 Q331_splice -KIAA1468 Q579 K:6 -BCL2L12 F8 F:8 -SF3B1 R625 H:4|C:4|L:2|G:1 -AHI1 Q294 R:5 -KDM6A Q555 *:9 -FGFR1 K687 E:4|N:1|K:1|*:1 -KIT K642 E:5|N:1 -TP53 S241 F:19|Y:10|C:6|P:3|A:2 -OBP2B S133 P:5 -APC R232 *:12 -TP53 L194 R:15|H:3|F:3|P:2 -MAP2K1 F53 L:4|V:1|I:1 -GNA11 Q209 L:5 -MAPK7 A501 D:6 -TP53 S33_splice -PRSS27 V246 G:5 -PCDHA10 G539 A:8|V:1 -MAP2K2 F57 L:3|V:2 -PTPN11 A72 T:3|V:2|D:2 -TP53 V272 M:17|G:4|V:1|L:1|K:1|E:1 -SYT13 P228 S:7|T:1 -FAM46D S69 R:4|G:2 -PTN K44 T:6|M:1 -TP53 P278 S:11|L:7|T:6|R:5|A:5|H:3 -HEXDC T482 P:5 -ZBTB7A K424 T:4|N:1 -EVPL C322 C:6 -FGFR1 N577 K:5|D:1 -TP53 V225_splice -TP53 H214 R:15|L:1 -ERBB2 R678 Q:9 -PTEN C136 R:4|Y:2|F:2|*:1 -CTNNB1 N387 K:4|Y:1|I:1 -ERBB2 D769 Y:5|H:2|N:1 -MEF2A P99 S:7 -FGFR3 R248 C:9 -MYO18B P1018 S:3|P:3|L:2|T:1 -TP53 T125_splice SS:23 -CDKN2A E88 *:10|K:5 -COBL E480 D:6 -ATM N2875 S:3|T:2|K:1 -ZHX3 N249 K:6 -APC Y935 *:6 -PLCB3 T909 P:5 -CHIT1 W358 *:7 -FRMD4B P368 S:5|L:1|F:1 -PCSK5 W924 *:7|L:1 -KRAS K117 N:9 -C3orf70 S6 L:9|W:2|*:1 -APC Q1338 *:6 -CHD3 I293 L:5 -OVGP1 S536 G:5 -INMT S212 F:8|S:1 -LAMC1 P641 P:4|L:2 -LCE1A K28 T:2|R:2|M:1 -PPP6C R301 C:14 -NFE2L2 G31 A:4|R:2|V:1|E:1 -U2AF1 Q157 R:2|P:2 -CDH1 Q23 *:7 -SF3B1 G742 D:6 -KAT8 R98 W:7|Q:1 -SEMA4B S231 S:4|F:2 -CTNNB1 H36 P:5|Y:1 -ERBB2 V777 L:4|M:1 -PNLIPRP3 K431 T:5|R:1 -NFE2L2 R34 G:7|Q:4|P:2 -FGFR2 S252 W:10|S:2 -FBXW7 R367 *:12 -FOXA1 I176 M:4|V:3 -SLC4A11 V718 G:5 -H3F3A G35 R:6 -FGFR2 C383 R:4|Y:1 -KIAA0020 K63 R:5 -TP53 F270 S:5|L:4|I:4|C:2|V:1 -SF3B1 K666 T:2|E:2|Q:1 -PIK3R1 R348 *:14 -PIK3R1 K567 E:5 -ALK R1275 Q:10|L:1|*:1 -U2AF1 I24 T:3|V:1 -DNAJB1 L190 L:4 -STAT3 H410 R:3|P:2 -PIK3CA E81 K:12|*:1 -TP53 E225_splice SS:19 -PTPN11 E76 K:4|A:2|G:1 -EGFR G719 A:5|D:1|C:1 -EHMT1 V280 F:5 -WDR73 G316 R:5 -TMEM131 E1319 Q:4|*:2|K:1 -WDR52 V1227 G:5 -SMAD4 D351 G:3|Y:2|H:2|A:1 -DICER1 E1813 G:3|Q:2|A:1 -HOOK2 S630 S:3|F:2|A:1 -KLF5 E419 Q:4|K:3 -LST3 R709 R:4|T:1|K:1 -HSD11B1 G45 V:2|R:2|W:1|G:1|E:1 -RBM39 T353 I:4|T:1 -PCBP1 L102 Q:2|R:1|P:1 -BCL2L12 F17 F:7 -SPOP Y87 S:2|N:2|C:1 -MYC T73 P:3|I:2 -TROAP S562 I:5 -PTPN11 G503 V:6|G:1 -ACVR1 R258 G:4|M:1 -PIK3CA V344 G:5|M:4|A:2 -ARID3A S557 G:4 -THBD C554 C:7 -TP53 G244 D:9|C:8|S:5|V:2|R:1|G:1 -SMARCA4 G1232 S:6|C:2|V:1 -RARA F286 S:2|I:1|C:1 -CCND1 P287 L:3|S:2|T:1 -CYP4A11 I491 M:3|T:1 -MAX R60 Q:9 -ARAF S214 F:3|S:1|C:1|A:1 -RQCD1 S87 P:3|C:3 -ABCC10 R570 W:5|Q:2|L:1 -FRMD6 S17 S:3|I:1|C:1 -NCR1 E42 K:6|G:1|E:1 -CELSR1 W1958 G:4|C:1 -LRP5 S1609 P:4|S:1 -MYO9A P1300 S:5|P:1|L:1 -CYP2C8 P402 S:7|L:2 -PIK3CA N1044 K:4|Y:2 -CDK4 K22 Q:2|M:2 -HIST1H3C K37 M:5 -TP53 N239 S:8|D:6|T:1 -LRRC71 K324 K:4 -CRB1 F630 V:5|S:1 -AMPD1 L631 F:4|V:1 -EBF2 G444 E:8|V:1 -TUBGCP4 A8 D:4|T:1 -CIZ1 L59 P:4 -TP53 I255 F:7|S:3|N:2|T:1 -PASD1 M338 I:5 -TP53 E286 K:17|*:7|G:4|Q:3|V:1|A:1 -IL7R K395 T:3|R:2|N:1|M:1|K:1 -SSBP3 K6 R:4 -PARP1 G500 G:6 -SLCO1B7 E27 K:9 -ACVR1 G328 E:4|V:2 -PCMTD1 P342 L:6|T:1|P:1 -BCL2L12 R18 W:7 -TGFBR2 R553 C:5|H:4|L:1 -VPS37B Y191 S:4 -C16orf80 R100 C:6|H:1 -TRIM65 H383 N:3|L:1 -VHL N78 S:3|D:2|Y:1 -MTOR C1483 F:2|Y:1|W:1|R:1 -DDX28 S442 S:3|F:2 -S100A8 K49 R:5 -BTBD11 K1003 T:3|R:1|M:1 -TARBP2 E191 *:5|E:1 -ZNF623 T500 K:5 -SLC16A13 F158 L:4 -TP53 S215 I:6|R:5|G:3|N:1 -PIK3CA G106 V:7|R:1 -UCHL1 H161 Y:5 -TPSD1 P22 R:6|P:3 -INTS12 M1 V:2|T:1|L:1 -FRMD6 F6 F:4 -UBXN11 S494 C:4 -SPOP F102 V:2|C:2|L:1 -PIK3CA C378 R:3|Y:2|F:1 -NFIC S339 P:4 -FBXW7 R658 *:10|Q:3|R:1 -MICA I236 T:4 -PODXL S22 P:4 -XPO6 I274 T:3|V:1 -CLECL1 Y50 N:4 -MXRA5 G792 G:9 -TSC22D2 S735 Y:4|F:2 -KIF26B R2024 H:5|C:2|S:1 -TP53 T125 T:36|M:7|P:2|R:1|K:1 -S100A3 P97 S:3|P:2 -TMEM200C R19 C:5|S:1|H:1 -SWI5 P34 S:7 -TUBGCP6 S1192 S:4 -CSPG5 R365 R:3|Q:2|W:1 -METTL14 R298 P:4|H:4 -BRD7 Y455 *:4 -ARID2 S297 F:8 -LTN1 S19 F:6|Y:1 -TP53 L111 P:5|R:4|Q:3 -PANK3 I301 F:4 -RSBN1L L432 V:4 -MYT1L K203 T:3|R:1 -TMEM147 A92 V:4|A:1 -EGFR R108 K:7|G:1 -SMAD4 D537 H:4|E:2|Y:1|V:1|G:1 -PSG4 E263 K:7 -PDHA1 G145 D:5 -LSM14A R272 C:7|H:1 -THRA R79 H:7 -FANK1 Q4 *:5 -ASF1B P21 L:3|P:2 -MAX H28 R:4 -APC Q1406 *:7 -APC E1408 *:7 -UBE2D3 M32 I:3|V:1 -MET D1010_splice -TBX2 S192 I:4 -ANKZF1 A650 V:4|A:1 -PIK3CA R38 H:7|C:4|S:1|L:1|G:1 -ELTD1 S11 F:5|S:3|P:1 -RPL10L K156 R:3|T:1|M:1 -MTOR I2500 M:3|F:1 -RHOA R5 W:5|Q:4|L:1 -RHOA E40 Q:6|K:1|*:1 -PCED1B S343 F:6|Y:1|P:1 -MYC S161 L:6 -NOL4 L423 L:3|V:1|M:1 -DNAH9 E2368 K:7|D:1 -CHST12 V12 G:4 -KCNQ5 G273 E:7|R:1 -ZNF516 A256 D:5 -CR1 R1842 C:5|H:4 -RINT1 K85 T:2|N:2 -TGFBRAP1 P824 S:2|L:2|P:1|F:1 -TOP2B R651 H:7 -PACS2 Q87 H:3|Q:1 -ZNF649 R198 I:5|S:1|K:1 -TP53 Q144 *:12|P:1|L:1|H:1 -VHL V155_splice -TACC3 P417 S:4|P:2 -ATP6V1B2 P352 S:4|P:1 -KCNJ8 G417 E:5|R:1|D:1 -TP53 D281 Y:8|N:7|V:4|E:4|H:2|D:2|P:1|G:1|A:1 -ARHGAP28 L277 R:3|P:2 -MEF2A Y105 C:4 -TCF20 P815 L:4|S:2 -BRAF L597 Q:2|S:1|R:1 -CANT1 K131 R:4 -ARID1A R1335 *:9 -LCE1F P27 P:7|Q:2|L:1 -ACP6 V29 G:4 -MAGEC1 K1046 N:6 -ACVR1B R485 *:8 -BRAF G596 R:2|V:1|S:1|D:1 -CEP63 S153 L:5|S:4 -PIK3CB D1067 V:3|Y:1|A:1 -ARHGAP33 S964 S:4 -KCNH5 T147 T:13 -DUSP16 R483 *:7 -CDKN2A L130 R:3|Q:2|V:1 -FAM58A K141_splice -C6 K817 T:5|R:1 -MED28 G7 G:3|C:1 -PROCR R98 L:8 -MARCH10 G241 E:4|R:1|G:1 -FZD10 S22 R:5 -RTKN2 R33 *:8|Q:2 -EP300 H1451 R:1|P:1|L:1|H:1 -ARID1A R693 *:8 -THSD7B G557 R:5|E:2|V:1 -THSD7B E1181 K:9 -SHROOM1 P300 T:4 -NUP93 Q15 *:4 -ERBB3 M60 K:3|R:1 -CLEC14A R193 C:5|H:3|R:2 -EYA4 L152 R:2|I:2|V:1|P:1|H:1 -CEP89 S153 G:3|I:1 -SHB A460 T:4 -APOBR E361 D:5 -SF3B1 D894 N:2|G:2|A:1 -BRINP1 G713 G:9 -RIPPLY2 S110 L:5|*:1 -TCEB1 Y79 S:1|N:1|F:1|*:1 -KCNJ12 E430 G:5|*:1 -NAP1L3 K502 R:2|T:1|N:1|M:1|K:1 -CYP7B1 K332 T:5 -HNMT L145 L:4 -NHS L215 P:4 -DHRS4 T102 M:6 -MAGI2 L603 R:3|P:2 \ No newline at end of file diff --git a/core/src/main/resources/dfs_plot.txt b/core/src/main/resources/dfs_plot.txt deleted file mode 100644 index a74127e89ad..00000000000 --- a/core/src/main/resources/dfs_plot.txt +++ /dev/null @@ -1,23 +0,0 @@ -library(Cairo) -library(survival) -attach(df) - -# Perform Disease Free Survival Analysis -dfs_surv = Surv (df$DFS_MONTHS, df$DFS_STATUS) -two_colors = c("blue", "red") -dfs_surv_fit = survfit(dfs_surv ~ GENE_SET_ALTERED) - -if (length(unique(df$GENE_SET_ALTERED))==1) { - plot (dfs_surv_fit, yscale=100, xlab="Months Disease Free", ylab="% Disease Free", cex.main=1.0, cex.axis=1.0, cex.lab=1.0, font=1) -} else { - dfs_log_rank = survdiff (dfs_surv ~ GENE_SET_ALTERED) - dfs_p_val <- 1 - pchisq(dfs_log_rank$chisq, length(dfs_log_rank$n) - 1) - - # Plot it - plot (dfs_surv_fit, col=two_colors, yscale=100, xlab="Months Disease Free", ylab="% Disease Free", cex.main=1.0, cex.axis=1.0, cex.lab=1.0, font=1) - strata = names (dfs_surv_fit$strata) - strata_english = gsub("GENE_SET_ALTERED=TRUE", "Gene Set Altered", strata) - strata_english = gsub("GENE_SET_ALTERED=FALSE", "Gene Set Not Altered", strata_english) - legend ("topright", bty="n", strata_english, fill=two_colors) - legend ("topright", bty="n", paste("Logrank test p-value: ", sprintf("%.6f", dfs_p_val)), inset=c(0.0, 0.1)) -} \ No newline at end of file diff --git a/core/src/main/resources/drug_target_annotation.txt b/core/src/main/resources/drug_target_annotation.txt deleted file mode 100644 index 538f85c2c77..00000000000 --- a/core/src/main/resources/drug_target_annotation.txt +++ /dev/null @@ -1,8 +0,0 @@ -#Gene of event Event Target gene -PTEN MUT,HOMDEL AKT1,AKT2,AKT3,PIK3CA -TSC1,TSC2 MUT,HOMDEL MTOR -BRCA1,BRCA2 MUT,HOMDEL PARP1 -CDKN2A MUT,HOMDEL CDK4,CDK6 -CCND1 MUT,AMP CDK4,CDK6 -PIK3CA MUT AKT1,AKT2,AKT3 -PIK3R1 MUT,HOMDEL AKT1,AKT2,AKT3,PIK3CA diff --git a/core/src/main/resources/gene_sets.txt b/core/src/main/resources/gene_sets.txt deleted file mode 100644 index 3738181d070..00000000000 --- a/core/src/main/resources/gene_sets.txt +++ /dev/null @@ -1,23 +0,0 @@ -Prostate Cancer: AR Signaling=SOX9 RAN TNK2 EP300 PXN NCOA2 AR NRIP1 NCOR1 NCOR2 -Prostate Cancer: AR and steroid synthesis enzymes=AKR1C3 AR CYB5A CYP11A1 CYP11B1 CYP11B2 CYP17A1 CYP19A1 CYP21A2 HSD17B1 HSD17B10 HSD17B11 HSD17B12 HSD17B13 HSD17B14 HSD17B2 HSD17B3 HSD17B4 HSD17B6 HSD17B7 HSD17B8 HSD3B1 HSD3B2 HSD3B7 RDH5 SHBG SRD5A1 SRD5A2 SRD5A3 STAR -Prostate Cancer: Steroid inactivating genes=AKR1C1 AKR1C2 AKR1C4 CYP3A4 CYP3A43 CYP3A5 CYP3A7 UGT2B15 UGT2B17 UGT2B7 -Prostate Cancer: Down-regulated by androgen=BCHE CDK8 CTBP1 ACKR3 DDC DPH1 FN1 HES6 MMP16 MYC PEG3 PIK3R3 PRKD1 SCNN1A SDC4 SERPINI1 SLC29A1 ST7 TULP4 -Glioblastoma: TP53 Pathway=CDKN2A MDM2 MDM4 TP53 -Glioblastoma: RTK/Ras/PI3K/AKT Signaling=EGFR ERBB2 PDGFRA MET KRAS NRAS HRAS NF1 SPRY2 FOXO1 FOXO3 AKT1 AKT2 AKT3 PIK3R1 PIK3CA PTEN -Glioblastoma: RB Pathway=CDKN2A CDKN2B CDKN2C CDK4 CDK6 CCND2 RB1 -Ovarian Cancer: Oncogenes associated with epithelial ovarian cancer=RAB25 MECOM EIF5A2 PRKCI PIK3CA KIT FGF1 MYC EGFR NOTCH3 KRAS AKT1 ERBB2 PIK3R1 CCNE1 AKT2 AURKA -Ovarian Cancer: Putative tumor-suppressor genes in epithelial ovarian cancer=DIRAS3 RASSF1 DLEC1 SPARC DAB2 PLAGL1 RPS6KA2 PTEN OPCML BRCA2 ARL11 WWOX TP53 DPH1 BRCA1 PEG3 -General: Cell Cycle Control=RB1 RBL1 RBL2 CCNA1 CCNB1 CDK1 CCNE1 CDK2 CDC25A CCND1 CDK4 CDK6 CCND2 CDKN2A CDKN2B MYC CDKN1A CDKN1B E2F1 E2F2 E2F3 E2F4 E2F5 E2F6 E2F7 E2F8 SRC JAK1 JAK2 STAT1 STAT2 STAT3 STAT5A STAT5B -General: p53 signaling=TP53 MDM2 MDM4 CDKN2A CDKN2B TP53BP1 -General: Notch signaling=ADAM10 ADAM17 APH1A APH1B ARRDC1 CIR1 CTBP1 CTBP2 CUL1 DLL1 DLL3 DLL4 DTX1 DTX2 DTX3 DTX3L DTX4 EP300 FBXW7 HDAC1 HDAC2 HES1 HES5 HEYL ITCH JAG1 JAG2 KDM5A LFNG MAML1 MAML2 MAML3 MFNG NCOR2 NCSTN NOTCH1 NOTCH2 NOTCH3 NOTCH4 NRARP NUMB NUMBL PSEN1 PSEN2 PSENEN RBPJ RBPJL RFNG SNW1 SPEN HES2 HES4 HES7 HEY1 HEY2 -General: DNA Damage Response=CHEK1 CHEK2 RAD51 BRCA1 BRCA2 MLH1 MSH2 ATM ATR MDC1 PARP1 FANCF -General: Other growth / proliferation signaling=CSF1 CSF1R IGF1 IGF1R FGF1 FGFR1 AURKA DLEC1 PLAGL1 OPCML DPH1 -General: Survival / cell death regulation signaling=NFKB1 NFKB2 CHUK DIRAS3 FAS HLA-G BAD BCL2 BCL2L1 APAF1 CASP9 CASP8 CASP10 CASP3 CASP6 CASP7 GSK3B ARL11 WWOX PEG3 TGFB1 TGFBR1 TGFBR2 -General: Telomere maintenance=TERC TERT -General: RTK signaling family=EGFR ERBB2 ERBB3 ERBB4 PDGFA PDGFB PDGFRA PDGFRB KIT FGF1 FGFR1 IGF1 IGF1R VEGFA VEGFB KDR -General: PI3K-AKT-mTOR signaling=PIK3CA PIK3R1 PIK3R2 PTEN PDPK1 AKT1 AKT2 FOXO1 FOXO3 MTOR RICTOR TSC1 TSC2 RHEB AKT1S1 RPTOR MLST8 -General: Ras-Raf-MEK-Erk/JNK signaling=KRAS HRAS BRAF RAF1 MAP3K1 MAP3K2 MAP3K3 MAP3K4 MAP3K5 MAP2K1 MAP2K2 MAP2K3 MAP2K4 MAP2K5 MAPK1 MAPK3 MAPK4 MAPK6 MAPK7 MAPK8 MAPK9 MAPK12 MAPK14 DAB2 RASSF1 RAB25 -General: Regulation of ribosomal protein synthesis and cell growth=RPS6KA1 RPS6KA2 RPS6KB1 RPS6KB2 EIF5A2 EIF4E EIF4EBP1 RPS6 HIF1A -General: Angiogenesis=VEGFA VEGFB KDR CXCL8 CXCR1 CXCR2 -General: Folate transport=SLC19A1 FOLR1 FOLR2 FOLR3 IZUMO1R -General: Invasion and metastasis=MMP1 MMP2 MMP3 MMP7 MMP9 MMP10 MMP11 MMP12 MMP13 MMP14 MMP15 MMP16 MMP17 MMP19 MMP21 MMP23B MMP24 MMP25 MMP26 MMP27 MMP28 ITGB3 ITGAV PTK2 CDH1 SPARC WFDC2 diff --git a/core/src/main/resources/gene_symbol_disambiguation.txt b/core/src/main/resources/gene_symbol_disambiguation.txt deleted file mode 100644 index ab97b3850ee..00000000000 --- a/core/src/main/resources/gene_symbol_disambiguation.txt +++ /dev/null @@ -1,3 +0,0 @@ -#Gene_Symbol Entrez_Gene_ID -MLL2 8085 -CDC2 983 diff --git a/core/src/main/resources/human_readable_categories.txt b/core/src/main/resources/human_readable_categories.txt deleted file mode 100644 index 37803883870..00000000000 --- a/core/src/main/resources/human_readable_categories.txt +++ /dev/null @@ -1,69 +0,0 @@ -TUMORRESIDUALDISEASE : Tumor Residual Disease -TUMORGRADE : Tumor Grade -VITALSTATUS : Vital Status -PlatinumStatus : Platinum Status -TUMORSTAGE : Tumor Stage -PERSONNEOPLASMCANCERSTATUS : Person Neoplasm Cancer Status -ProgressionFreeStatus : Progression Free Status -PRIMARYTHERAPYOUTCOMESUCCESS : Primary Therapy Outcome Success - -mutation_rate_cluster : Mutation Rate Cluster -cna_cluster_k4 : CNA Cluster K4 -cna_cluster_k3 : CNA Cluster K3 -micro_rna_cluster : microRNA Cluster -vital_status : Vital Status -cna_cluster_arm : CNA Cluster ARM -tumor_grade : Tumor Grade -mhl1_hypermethylated : MHL1 Hypermethylated -mrna_expression_cluster: mRNA Expression Cluster -2009stagegroup: 2009 Stage Group -msi_status_7_marker_call : MSI Status 7 Marker Call -data_gistic : Data Gistic -data_rna_seq : Data RNA sequence -histology : Histology -methylation_cluster : Methylation Cluster -recurred_progressed : Recurred Progressed -patient_type : Patient Type -data_maf: Data Maf -histology_grade : Histology Grade -disease_status_at_lfu : Disease Status at LFU -data_core_sample : Data Core Sample -msi_status_5_marker_call : MSI Status 5 Marker Call - -gender : Gender -histological_type : Histological Type -icd_10 : ICD 10 -pretreatment_history : Pretreatment History -prior_glioma : Prior Glioma -karnofsky_performance_score : Karnofsky Performance Score - -sequenced : Sequenced -copy-number : Copy-number -Agilent_expression : Agilent Expression -methylation : Methylation -MSI_status : MSI Status -methylation_subtype : Methylation Subtype -iCluster : i Cluster -MLH1_silencing : MLH1 Silencing -expression_subtype : Expression Subtype -hypermutated : Hypermutated -cancer : Cancer -anatomic_organ_subdivision : Anatomic Organ Subdivision -tumor_site : Tumor Site -primary_tumor_pathologic_spread : Primary Tumor Pathologic Spread -tumor_stage : Tumor Stage - -ClinT_Stage : ClinT Stage -PathStage : Path Stage -PathGG1 : Path GG1 -PathGG2 : Path GG2 -PathGGS : Path GGS -ERG-fusion gex : ERG-fusion gex -ERG-fusion aCGH : ERG-fusion Array CGH -Copy-number Cluster : Copy-number Cluster - -complete (aCGH, mRNA, sequencing) : Complete (Array CGH, mRNA, and Sequencing Data) -aCGH data : Array CGH Data -mRNA data : mRNA Data - - diff --git a/core/src/main/resources/micrornas.tsv b/core/src/main/resources/micrornas.tsv deleted file mode 100644 index bd84fb9a68c..00000000000 --- a/core/src/main/resources/micrornas.tsv +++ /dev/null @@ -1,4001 +0,0 @@ -precusor mature alias -hsa-mir-5787 hsa-miR-5787 mir-5787/5787 -hsa-mir-6068 hsa-miR-6068 mir-6068/6068 -hsa-mir-6069 hsa-miR-6069 mir-6069/6069 -hsa-mir-6070 hsa-miR-6070 mir-6070/6070 -hsa-mir-6073 hsa-miR-6073 mir-6073/6073 -hsa-mir-6074 hsa-miR-6074 mir-6074/6074 -hsa-mir-6076 hsa-miR-6076 mir-6076/6076 -hsa-mir-6078 hsa-miR-6078 mir-6078/6078 -hsa-mir-6079 hsa-miR-6079 mir-6079/6079 -hsa-mir-6080 hsa-miR-6080 mir-6080/6080 -hsa-mir-6083 hsa-miR-6083 mir-6083/6083 -hsa-mir-6084 hsa-miR-6084 mir-6084/6084 -hsa-mir-6085 hsa-miR-6085 mir-6085/6085 -hsa-mir-6087 hsa-miR-6087 mir-6087/6087 -hsa-mir-6088 hsa-miR-6088 mir-6088/6088 -hsa-mir-6089-1 hsa-miR-6089 mir-6089-1/6089 -hsa-mir-6125 hsa-miR-6125 mir-6125/6125 -hsa-mir-6126 hsa-miR-6126 mir-6126/6126 -hsa-mir-6128 hsa-miR-6128 mir-6128/6128 -hsa-mir-378j hsa-miR-378j mir-378j/378j -hsa-mir-6129 hsa-miR-6129 mir-6129/6129 -hsa-mir-6131 hsa-miR-6131 mir-6131/6131 -hsa-mir-99b hsa-miR-99b-5p mir-99b/5p -hsa-mir-99b hsa-miR-99b-3p mir-99b/3p -hsa-mir-99b hsa-miR-99b mir-99b/99b -hsa-mir-99b hsa-miR-99b* mir-99b/99b* -hsa-mir-99a hsa-miR-99a-5p mir-99a/5p -hsa-mir-6134 hsa-miR-6134 mir-6134/6134 -hsa-mir-6165 hsa-miR-6165 mir-6165/6165 -hsa-mir-99a hsa-miR-99a-3p mir-99a/3p -hsa-mir-99a hsa-miR-99a mir-99a/99a -hsa-mir-99a hsa-miR-99a* mir-99a/99a* -hsa-mir-99-21 hsa-miR-99a-5p mir-99-21/5p -hsa-mir-99-21 hsa-miR-99a-3p mir-99-21/3p -hsa-mir-99-21 hsa-miR-99a mir-99-21/99a -hsa-mir-99 hsa-miR-99a-5p mir-99/5p -hsa-mir-99 hsa-miR-99a-3p mir-99/3p -hsa-mir-99 hsa-miR-99a mir-99/99a -hsa-mir-9851 hsa-miR-9851-5p mir-9851/5p -hsa-mir-9851 hsa-miR-9851-3p mir-9851/3p -hsa-mir-98-X hsa-miR-98-5p mir-98-X/5p -hsa-mir-98-X hsa-miR-98 mir-98-X/98 -hsa-mir-98-X hsa-miR-98-3p mir-98-X/3p -hsa-mir-98 hsa-miR-98-5p mir-98/5p -hsa-mir-98 hsa-miR-98-3p mir-98/3p -hsa-mir-98 hsa-miR-98 mir-98/98 -hsa-mir-96-7 hsa-miR-96-5p mir-96-7/5p -hsa-mir-96-7 hsa-miR-96 mir-96-7/96 -hsa-mir-96-7 hsa-miR-96-3p mir-96-7/3p -hsa-mir-96 hsa-miR-96-5p mir-96/5p -hsa-mir-96 hsa-miR-96-3p mir-96/3p -hsa-mir-96 hsa-miR-96 mir-96/96 -hsa-mir-96 hsa-miR-96* mir-96/96* -hsa-mir-95-4 hsa-miR-95-3p mir-95-4/3p -hsa-mir-95-4 hsa-miR-95-5p mir-95-4/5p -hsa-mir-95 hsa-miR-95-3p mir-95/3p -hsa-mir-95 hsa-miR-95-5p mir-95/5p -hsa-mir-95 hsa-miR-95 mir-95/95 -hsa-mir-942 hsa-miR-942-5p mir-942/5p -hsa-mir-942 hsa-miR-942-3p mir-942/3p -hsa-mir-942 hsa-miR-942 mir-942/942 -hsa-mir-937 hsa-miR-937-5p mir-937/5p -hsa-mir-937 hsa-miR-937-3p mir-937/3p -hsa-mir-937 hsa-miR-937 mir-937/937 -hsa-mir-93-7.1 hsa-miR-93-5p mir-93-7.1/5p -hsa-mir-93-7.1 hsa-miR-93 mir-93-7.1/93 -hsa-mir-93-7.1 hsa-miR-93-3p mir-93-7.1/3p -hsa-mir-93-1 hsa-miR-93-5p mir-93-1/5p -hsa-mir-93-1 hsa-miR-93 mir-93-1/93 -hsa-mir-93-1 hsa-miR-93-3p mir-93-1/3p -hsa-mir-93 hsa-miR-93-5p mir-93/5p -hsa-mir-93 hsa-miR-93-3p mir-93/3p -hsa-mir-93 hsa-miR-93 mir-93/93 -hsa-mir-93 hsa-miR-93* mir-93/93* -hsa-mir-92b hsa-miR-92b-5p mir-92b/5p -hsa-mir-92b hsa-miR-92b-3p mir-92b/3p -hsa-mir-92b hsa-miR-92b* mir-92b/92b* -hsa-mir-92b hsa-miR-92b mir-92b/92b -hsa-mir-92a-2 hsa-miR-92a-2-5p mir-92a-2/5p -hsa-mir-92a-2 hsa-miR-92a-3p mir-92a-2/3p -hsa-mir-92a-2 hsa-miR-92 mir-92a-2/92 -hsa-mir-92a-2 hsa-miR-92a-2* mir-92a-2/2* -hsa-mir-92a-2 hsa-miR-92a mir-92a-2/92a -hsa-mir-92a-1 hsa-miR-92a-1-5p mir-92a-1/5p -hsa-mir-92a-1 hsa-miR-92a-3p mir-92a-1/3p -hsa-mir-92a-1 hsa-miR-92 mir-92a-1/92 -hsa-mir-92a-1 hsa-miR-92a-1* mir-92a-1/1* -hsa-mir-92a-1 hsa-miR-92a mir-92a-1/92a -hsa-mir-92-X hsa-miR-92a-2-5p mir-92-X/5p -hsa-mir-92-X hsa-miR-92a-3p mir-92-X/3p -hsa-mir-92-X hsa-miR-92 mir-92-X/92 -hsa-mir-92-X hsa-miR-92a mir-92-X/92a -hsa-mir-92-2 hsa-miR-92a-2-5p mir-92-2/5p -hsa-mir-92-2 hsa-miR-92a-3p mir-92-2/3p -hsa-mir-92-2 hsa-miR-92 mir-92-2/92 -hsa-mir-92-2 hsa-miR-92a mir-92-2/92a -hsa-mir-92-13 hsa-miR-92a-1-5p mir-92-13/5p -hsa-mir-92-13 hsa-miR-92a-3p mir-92-13/3p -hsa-mir-544a hsa-miR-544a mir-544a/544a -hsa-mir-92-13 hsa-miR-92 mir-92-13/92 -hsa-mir-92-13 hsa-miR-92a mir-92-13/92a -hsa-mir-92-1 hsa-miR-92a-1-5p mir-92-1/5p -hsa-mir-92-1 hsa-miR-92a-3p mir-92-1/3p -hsa-mir-92-1 hsa-miR-92 mir-92-1/92 -hsa-mir-92-1 hsa-miR-92a mir-92-1/92a -hsa-mir-9-3 hsa-miR-9-5p mir-9-3/5p -hsa-mir-9-3 hsa-miR-9 mir-9-3/9 -hsa-mir-9-3 hsa-miR-9* mir-9-3/9* -hsa-mir-9-2 hsa-miR-9-5p mir-9-2/5p -hsa-mir-9-2 hsa-miR-9-3p mir-9-2/3p -hsa-mir-9-2 hsa-miR-9 mir-9-2/9 -hsa-mir-9-2 hsa-miR-9* mir-9-2/9* -hsa-mir-9-1 hsa-miR-9-5p mir-9-1/5p -hsa-mir-9-1 hsa-miR-9-3p mir-9-1/3p -hsa-mir-9-1 hsa-miR-9 mir-9-1/9 -hsa-mir-9-1 hsa-miR-9* mir-9-1/9* -hsa-mir-892c hsa-miR-892c-5p mir-892c/5p -hsa-mir-892c hsa-miR-892c-3p mir-892c/3p -hsa-mir-891a hsa-miR-891a-5p mir-891a/5p -hsa-mir-891a hsa-miR-891a-3p mir-891a/3p -hsa-mir-891a hsa-miR-891a mir-891a/891a -hsa-mir-889 hsa-miR-889-5p mir-889/5p -hsa-mir-889 hsa-miR-889-3p mir-889/3p -hsa-mir-889 hsa-miR-889 mir-889/889 -hsa-mir-888 hsa-miR-888-5p mir-888/5p -hsa-mir-888 hsa-miR-888-3p mir-888/3p -hsa-mir-888 hsa-miR-888 mir-888/888 -hsa-mir-888 hsa-miR-888* mir-888/888* -hsa-mir-887 hsa-miR-887-5p mir-887/5p -hsa-mir-887 hsa-miR-887-3p mir-887/3p -hsa-mir-887 hsa-miR-887 mir-887/887 -hsa-mir-885 hsa-miR-885-5p mir-885/5p -hsa-mir-885 hsa-miR-885-3p mir-885/3p -hsa-mir-885 hsa-miR-885-5p mir-885/5p -hsa-mir-885 hsa-miR-885-3p mir-885/3p -hsa-mir-877 hsa-miR-877-5p mir-877/5p -hsa-mir-877 hsa-miR-877-3p mir-877/3p -hsa-mir-877 hsa-miR-877 mir-877/877 -hsa-mir-877 hsa-miR-877* mir-877/877* -hsa-mir-876 hsa-miR-876-5p mir-876/5p -hsa-mir-876 hsa-miR-876-3p mir-876/3p -hsa-mir-875 hsa-miR-875-5p mir-875/5p -hsa-mir-875 hsa-miR-875-3p mir-875/3p -hsa-mir-874 hsa-miR-874-5p mir-874/5p -hsa-mir-874 hsa-miR-874-3p mir-874/3p -hsa-mir-874 hsa-miR-874 mir-874/874 -hsa-mir-873 hsa-miR-873-5p mir-873/5p -hsa-mir-873 hsa-miR-873-3p mir-873/3p -hsa-mir-873 hsa-miR-873 mir-873/873 -hsa-mir-7843 hsa-miR-7843-5p mir-7843/5p -hsa-mir-7843 hsa-miR-7843-3p mir-7843/3p -hsa-mir-770 hsa-miR-770-5p mir-770/5p -hsa-mir-770 hsa-miR-770-5p mir-770/5p -hsa-mir-769 hsa-miR-769-5p mir-769/5p -hsa-mir-769 hsa-miR-769-3p mir-769/3p -hsa-mir-767 hsa-miR-767-5p mir-767/5p -hsa-mir-767 hsa-miR-767-3p mir-767/3p -hsa-mir-766 hsa-miR-766-5p mir-766/5p -hsa-mir-766 hsa-miR-766-3p mir-766/3p -hsa-mir-766 hsa-miR-766 mir-766/766 -hsa-mir-758 hsa-miR-758-5p mir-758/5p -hsa-mir-758 hsa-miR-758-3p mir-758/3p -hsa-mir-758 hsa-miR-758 mir-758/758 -hsa-mir-744 hsa-miR-744-5p mir-744/5p -hsa-mir-744 hsa-miR-744-3p mir-744/3p -hsa-mir-744 hsa-miR-744 mir-744/744 -hsa-mir-744 hsa-miR-744* mir-744/744* -hsa-mir-23 hsa-miR-23a-5p mir-23/5p -hsa-mir-7162 hsa-miR-7162-5p mir-7162/5p -hsa-mir-7162 hsa-miR-7162-3p mir-7162/3p -hsa-mir-7161 hsa-miR-7161-5p mir-7161/5p -hsa-mir-7161 hsa-miR-7161-3p mir-7161/3p -hsa-mir-7160 hsa-miR-7160-5p mir-7160/5p -hsa-mir-7160 hsa-miR-7160-3p mir-7160/3p -hsa-mir-7159 hsa-miR-7159-5p mir-7159/5p -hsa-mir-7159 hsa-miR-7159-3p mir-7159/3p -hsa-mir-7158 hsa-miR-7158-5p mir-7158/5p -hsa-mir-7158 hsa-miR-7158-3p mir-7158/3p -hsa-mir-7157 hsa-miR-7157-5p mir-7157/5p -hsa-mir-7157 hsa-miR-7157-3p mir-7157/3p -hsa-mir-7156 hsa-miR-7156-5p mir-7156/5p -hsa-mir-7156 hsa-miR-7156-3p mir-7156/3p -hsa-mir-7155 hsa-miR-7155-5p mir-7155/5p -hsa-mir-7155 hsa-miR-7155-3p mir-7155/3p -hsa-mir-7154 hsa-miR-7154-5p mir-7154/5p -hsa-mir-7154 hsa-miR-7154-3p mir-7154/3p -hsa-mir-7153 hsa-miR-7153-5p mir-7153/5p -hsa-mir-7153 hsa-miR-7153-3p mir-7153/3p -hsa-mir-7152 hsa-miR-7152-5p mir-7152/5p -hsa-mir-7152 hsa-miR-7152-3p mir-7152/3p -hsa-mir-7151 hsa-miR-7151-5p mir-7151/5p -hsa-mir-7151 hsa-miR-7151-3p mir-7151/3p -hsa-mir-7114 hsa-miR-7114-5p mir-7114/5p -hsa-mir-7114 hsa-miR-7114-3p mir-7114/3p -hsa-mir-7113 hsa-miR-7113-5p mir-7113/5p -hsa-mir-7113 hsa-miR-7113-3p mir-7113/3p -hsa-mir-7112-1 hsa-miR-7112-5p mir-7112-1/5p -hsa-mir-7112-1 hsa-miR-7112-3p mir-7112-1/3p -hsa-mir-7112 hsa-miR-7112-5p mir-7112/5p -hsa-mir-7112 hsa-miR-7112-3p mir-7112/3p -hsa-mir-7111 hsa-miR-7111-5p mir-7111/5p -hsa-mir-7111 hsa-miR-7111-3p mir-7111/3p -hsa-mir-7110 hsa-miR-7110-5p mir-7110/5p -hsa-mir-7110 hsa-miR-7110-3p mir-7110/3p -hsa-mir-7109 hsa-miR-7109-5p mir-7109/5p -hsa-mir-7109 hsa-miR-7109-3p mir-7109/3p -hsa-mir-7108 hsa-miR-7108-5p mir-7108/5p -hsa-mir-7108 hsa-miR-7108-3p mir-7108/3p -hsa-mir-7107 hsa-miR-7107-5p mir-7107/5p -hsa-mir-7107 hsa-miR-7107-3p mir-7107/3p -hsa-mir-7106 hsa-miR-7106-5p mir-7106/5p -hsa-mir-7106 hsa-miR-7106-3p mir-7106/3p -hsa-mir-708 hsa-miR-708-5p mir-708/5p -hsa-mir-708 hsa-miR-708-3p mir-708/3p -hsa-mir-708 hsa-miR-708 mir-708/708 -hsa-mir-708 hsa-miR-708* mir-708/708* -hsa-mir-7-3 hsa-miR-7-5p mir-7-3/5p -hsa-mir-7-3 hsa-miR-7 mir-7-3/7 -hsa-mir-7-2 hsa-miR-7-5p mir-7-2/5p -hsa-mir-7-2 hsa-miR-7-2-3p mir-7-2/3p -hsa-mir-7-2 hsa-miR-7-2* mir-7-2/2* -hsa-mir-7-2 hsa-miR-7 mir-7-2/7 -hsa-mir-7-1 hsa-miR-7-5p mir-7-1/5p -hsa-mir-7-1 hsa-miR-7-1-3p mir-7-1/3p -hsa-mir-7-1 hsa-miR-7 mir-7-1/7 -hsa-mir-7-1 hsa-miR-7-1* mir-7-1/1* -hsa-mir-6895 hsa-miR-6895-5p mir-6895/5p -hsa-mir-6895 hsa-miR-6895-3p mir-6895/3p -hsa-mir-6894 hsa-miR-6894-5p mir-6894/5p -hsa-mir-6894 hsa-miR-6894-3p mir-6894/3p -hsa-mir-6893 hsa-miR-6893-5p mir-6893/5p -hsa-mir-6893 hsa-miR-6893-3p mir-6893/3p -hsa-mir-6892 hsa-miR-6892-5p mir-6892/5p -hsa-mir-6892 hsa-miR-6892-3p mir-6892/3p -hsa-mir-6891 hsa-miR-6891-5p mir-6891/5p -hsa-mir-6891 hsa-miR-6891-3p mir-6891/3p -hsa-mir-6890 hsa-miR-6890-5p mir-6890/5p -hsa-mir-6890 hsa-miR-6890-3p mir-6890/3p -hsa-mir-6889 hsa-miR-6889-5p mir-6889/5p -hsa-mir-6889 hsa-miR-6889-3p mir-6889/3p -hsa-mir-6888 hsa-miR-6888-5p mir-6888/5p -hsa-mir-6888 hsa-miR-6888-3p mir-6888/3p -hsa-mir-6887 hsa-miR-6887-5p mir-6887/5p -hsa-mir-6887 hsa-miR-6887-3p mir-6887/3p -hsa-mir-6886 hsa-miR-6886-5p mir-6886/5p -hsa-mir-6886 hsa-miR-6886-3p mir-6886/3p -hsa-mir-6885 hsa-miR-6885-5p mir-6885/5p -hsa-mir-6885 hsa-miR-6885-3p mir-6885/3p -hsa-mir-6884 hsa-miR-6884-5p mir-6884/5p -hsa-mir-6884 hsa-miR-6884-3p mir-6884/3p -hsa-mir-6883 hsa-miR-6883-5p mir-6883/5p -hsa-mir-6883 hsa-miR-6883-3p mir-6883/3p -hsa-mir-6882 hsa-miR-6882-5p mir-6882/5p -hsa-mir-6882 hsa-miR-6882-3p mir-6882/3p -hsa-mir-6881 hsa-miR-6881-5p mir-6881/5p -hsa-mir-6881 hsa-miR-6881-3p mir-6881/3p -hsa-mir-6880 hsa-miR-6880-5p mir-6880/5p -hsa-mir-6880 hsa-miR-6880-3p mir-6880/3p -hsa-mir-6879 hsa-miR-6879-5p mir-6879/5p -hsa-mir-6879 hsa-miR-6879-3p mir-6879/3p -hsa-mir-6878 hsa-miR-6878-5p mir-6878/5p -hsa-mir-6878 hsa-miR-6878-3p mir-6878/3p -hsa-mir-6877 hsa-miR-6877-5p mir-6877/5p -hsa-mir-6877 hsa-miR-6877-3p mir-6877/3p -hsa-mir-6876 hsa-miR-6876-5p mir-6876/5p -hsa-mir-6876 hsa-miR-6876-3p mir-6876/3p -hsa-mir-6875 hsa-miR-6875-5p mir-6875/5p -hsa-mir-6875 hsa-miR-6875-3p mir-6875/3p -hsa-mir-6874 hsa-miR-6874-5p mir-6874/5p -hsa-mir-6874 hsa-miR-6874-3p mir-6874/3p -hsa-mir-6873 hsa-miR-6873-5p mir-6873/5p -hsa-mir-6873 hsa-miR-6873-3p mir-6873/3p -hsa-mir-6872 hsa-miR-6872-5p mir-6872/5p -hsa-mir-6872 hsa-miR-6872-3p mir-6872/3p -hsa-mir-6871 hsa-miR-6871-5p mir-6871/5p -hsa-mir-6871 hsa-miR-6871-3p mir-6871/3p -hsa-mir-6870 hsa-miR-6870-5p mir-6870/5p -hsa-mir-6870 hsa-miR-6870-3p mir-6870/3p -hsa-mir-6869 hsa-miR-6869-5p mir-6869/5p -hsa-mir-6869 hsa-miR-6869-3p mir-6869/3p -hsa-mir-6843 hsa-miR-6843-3p mir-6843/3p -hsa-mir-6868 hsa-miR-6868-5p mir-6868/5p -hsa-mir-6868 hsa-miR-6868-3p mir-6868/3p -hsa-mir-6867 hsa-miR-6867-5p mir-6867/5p -hsa-mir-6867 hsa-miR-6867-3p mir-6867/3p -hsa-mir-6866 hsa-miR-6866-5p mir-6866/5p -hsa-mir-6866 hsa-miR-6866-3p mir-6866/3p -hsa-mir-6865 hsa-miR-6865-5p mir-6865/5p -hsa-mir-6865 hsa-miR-6865-3p mir-6865/3p -hsa-mir-6864 hsa-miR-6864-5p mir-6864/5p -hsa-mir-6864 hsa-miR-6864-3p mir-6864/3p -hsa-mir-6862-2 hsa-miR-6862-5p mir-6862-2/5p -hsa-mir-6862-2 hsa-miR-6862-3p mir-6862-2/3p -hsa-mir-6862-1 hsa-miR-6862-5p mir-6862-1/5p -hsa-mir-6862-1 hsa-miR-6862-3p mir-6862-1/3p -hsa-mir-6861 hsa-miR-6861-5p mir-6861/5p -hsa-mir-6861 hsa-miR-6861-3p mir-6861/3p -hsa-mir-6859-4 hsa-miR-6859-5p mir-6859-4/5p -hsa-mir-6859-4 hsa-miR-6859-3p mir-6859-4/3p -hsa-mir-6860 hsa-miR-6860 mir-6860/6860 -hsa-mir-6859-3 hsa-miR-6859-5p mir-6859-3/5p -hsa-mir-6859-3 hsa-miR-6859-3p mir-6859-3/3p -hsa-mir-6859-2 hsa-miR-6859-5p mir-6859-2/5p -hsa-mir-6859-2 hsa-miR-6859-3p mir-6859-2/3p -hsa-mir-6859-1 hsa-miR-6859-5p mir-6859-1/5p -hsa-mir-6859-1 hsa-miR-6859-3p mir-6859-1/3p -hsa-mir-6858 hsa-miR-6858-5p mir-6858/5p -hsa-mir-6858 hsa-miR-6858-3p mir-6858/3p -hsa-mir-6857 hsa-miR-6857-5p mir-6857/5p -hsa-mir-6857 hsa-miR-6857-3p mir-6857/3p -hsa-mir-6856 hsa-miR-6856-5p mir-6856/5p -hsa-mir-6856 hsa-miR-6856-3p mir-6856/3p -hsa-mir-6855 hsa-miR-6855-5p mir-6855/5p -hsa-mir-6855 hsa-miR-6855-3p mir-6855/3p -hsa-mir-6854 hsa-miR-6854-5p mir-6854/5p -hsa-mir-6854 hsa-miR-6854-3p mir-6854/3p -hsa-mir-6853 hsa-miR-6853-5p mir-6853/5p -hsa-mir-6853 hsa-miR-6853-3p mir-6853/3p -hsa-mir-6852 hsa-miR-6852-5p mir-6852/5p -hsa-mir-6852 hsa-miR-6852-3p mir-6852/3p -hsa-mir-6851 hsa-miR-6851-5p mir-6851/5p -hsa-mir-6851 hsa-miR-6851-3p mir-6851/3p -hsa-mir-6850 hsa-miR-6850-5p mir-6850/5p -hsa-mir-6850 hsa-miR-6850-3p mir-6850/3p -hsa-mir-6849 hsa-miR-6849-5p mir-6849/5p -hsa-mir-6849 hsa-miR-6849-3p mir-6849/3p -hsa-mir-6848 hsa-miR-6848-5p mir-6848/5p -hsa-mir-6848 hsa-miR-6848-3p mir-6848/3p -hsa-mir-6847 hsa-miR-6847-5p mir-6847/5p -hsa-mir-6847 hsa-miR-6847-3p mir-6847/3p -hsa-mir-6846 hsa-miR-6846-5p mir-6846/5p -hsa-mir-6846 hsa-miR-6846-3p mir-6846/3p -hsa-mir-6845 hsa-miR-6845-5p mir-6845/5p -hsa-mir-6845 hsa-miR-6845-3p mir-6845/3p -hsa-mir-6842 hsa-miR-6842-5p mir-6842/5p -hsa-mir-6842 hsa-miR-6842-3p mir-6842/3p -hsa-mir-6841 hsa-miR-6841-5p mir-6841/5p -hsa-mir-6841 hsa-miR-6841-3p mir-6841/3p -hsa-mir-6840 hsa-miR-6840-5p mir-6840/5p -hsa-mir-6840 hsa-miR-6840-3p mir-6840/3p -hsa-mir-6839 hsa-miR-6839-5p mir-6839/5p -hsa-mir-6839 hsa-miR-6839-3p mir-6839/3p -hsa-mir-6838 hsa-miR-6838-5p mir-6838/5p -hsa-mir-6838 hsa-miR-6838-3p mir-6838/3p -hsa-mir-6837 hsa-miR-6837-5p mir-6837/5p -hsa-mir-6837 hsa-miR-6837-3p mir-6837/3p -hsa-mir-6836 hsa-miR-6836-5p mir-6836/5p -hsa-mir-6836 hsa-miR-6836-3p mir-6836/3p -hsa-mir-6835 hsa-miR-6835-5p mir-6835/5p -hsa-mir-6835 hsa-miR-6835-3p mir-6835/3p -hsa-mir-6834 hsa-miR-6834-5p mir-6834/5p -hsa-mir-6834 hsa-miR-6834-3p mir-6834/3p -hsa-mir-6833 hsa-miR-6833-5p mir-6833/5p -hsa-mir-6833 hsa-miR-6833-3p mir-6833/3p -hsa-mir-6832 hsa-miR-6832-5p mir-6832/5p -hsa-mir-6832 hsa-miR-6832-3p mir-6832/3p -hsa-mir-6831 hsa-miR-6831-5p mir-6831/5p -hsa-mir-6831 hsa-miR-6831-3p mir-6831/3p -hsa-mir-6830 hsa-miR-6830-5p mir-6830/5p -hsa-mir-6830 hsa-miR-6830-3p mir-6830/3p -hsa-mir-6829 hsa-miR-6829-5p mir-6829/5p -hsa-mir-6829 hsa-miR-6829-3p mir-6829/3p -hsa-mir-6828 hsa-miR-6828-5p mir-6828/5p -hsa-mir-6828 hsa-miR-6828-3p mir-6828/3p -hsa-mir-6827 hsa-miR-6827-5p mir-6827/5p -hsa-mir-6072 hsa-miR-6072 mir-6072/6072 -hsa-mir-6827 hsa-miR-6827-3p mir-6827/3p -hsa-mir-6826 hsa-miR-6826-5p mir-6826/5p -hsa-mir-6826 hsa-miR-6826-3p mir-6826/3p -hsa-mir-6825 hsa-miR-6825-5p mir-6825/5p -hsa-mir-6825 hsa-miR-6825-3p mir-6825/3p -hsa-mir-6824 hsa-miR-6824-5p mir-6824/5p -hsa-mir-6824 hsa-miR-6824-3p mir-6824/3p -hsa-mir-6823 hsa-miR-6823-5p mir-6823/5p -hsa-mir-6823 hsa-miR-6823-3p mir-6823/3p -hsa-mir-6822 hsa-miR-6822-5p mir-6822/5p -hsa-mir-6822 hsa-miR-6822-3p mir-6822/3p -hsa-mir-6821 hsa-miR-6821-5p mir-6821/5p -hsa-mir-6821 hsa-miR-6821-3p mir-6821/3p -hsa-mir-6820 hsa-miR-6820-5p mir-6820/5p -hsa-mir-6820 hsa-miR-6820-3p mir-6820/3p -hsa-mir-6819 hsa-miR-6819-5p mir-6819/5p -hsa-mir-6819 hsa-miR-6819-3p mir-6819/3p -hsa-mir-7847 hsa-miR-7847-3p mir-7847/3p -hsa-mir-8081 hsa-miR-8081 mir-8081/8081 -hsa-mir-6818 hsa-miR-6818-5p mir-6818/5p -hsa-mir-6818 hsa-miR-6818-3p mir-6818/3p -hsa-mir-6817 hsa-miR-6817-5p mir-6817/5p -hsa-mir-6817 hsa-miR-6817-3p mir-6817/3p -hsa-mir-6816 hsa-miR-6816-5p mir-6816/5p -hsa-mir-6816 hsa-miR-6816-3p mir-6816/3p -hsa-mir-7150 hsa-miR-7150 mir-7150/7150 -hsa-mir-6815 hsa-miR-6815-5p mir-6815/5p -hsa-mir-6815 hsa-miR-6815-3p mir-6815/3p -hsa-mir-6814 hsa-miR-6814-5p mir-6814/5p -hsa-mir-6814 hsa-miR-6814-3p mir-6814/3p -hsa-mir-6813 hsa-miR-6813-5p mir-6813/5p -hsa-mir-6813 hsa-miR-6813-3p mir-6813/3p -hsa-mir-6812 hsa-miR-6812-5p mir-6812/5p -hsa-mir-6812 hsa-miR-6812-3p mir-6812/3p -hsa-mir-6811 hsa-miR-6811-5p mir-6811/5p -hsa-mir-6811 hsa-miR-6811-3p mir-6811/3p -hsa-mir-6810 hsa-miR-6810-5p mir-6810/5p -hsa-mir-6810 hsa-miR-6810-3p mir-6810/3p -hsa-mir-6809 hsa-miR-6809-5p mir-6809/5p -hsa-mir-6809 hsa-miR-6809-3p mir-6809/3p -hsa-mir-6808 hsa-miR-6808-5p mir-6808/5p -hsa-mir-6808 hsa-miR-6808-3p mir-6808/3p -hsa-mir-6807 hsa-miR-6807-5p mir-6807/5p -hsa-mir-6807 hsa-miR-6807-3p mir-6807/3p -hsa-mir-6806 hsa-miR-6806-5p mir-6806/5p -hsa-mir-6806 hsa-miR-6806-3p mir-6806/3p -hsa-mir-6805 hsa-miR-6805-5p mir-6805/5p -hsa-mir-6805 hsa-miR-6805-3p mir-6805/3p -hsa-mir-7641-1 hsa-miR-7641 mir-7641-1/7641 -hsa-mir-6804 hsa-miR-6804-5p mir-6804/5p -hsa-mir-6804 hsa-miR-6804-3p mir-6804/3p -hsa-mir-6803 hsa-miR-6803-5p mir-6803/5p -hsa-mir-6803 hsa-miR-6803-3p mir-6803/3p -hsa-mir-6802 hsa-miR-6802-5p mir-6802/5p -hsa-mir-6802 hsa-miR-6802-3p mir-6802/3p -hsa-mir-6801 hsa-miR-6801-5p mir-6801/5p -hsa-mir-6801 hsa-miR-6801-3p mir-6801/3p -hsa-mir-6800 hsa-miR-6800-5p mir-6800/5p -hsa-mir-6800 hsa-miR-6800-3p mir-6800/3p -hsa-mir-7702 hsa-miR-7702 mir-7702/7702 -hsa-mir-7703 hsa-miR-7703 mir-7703/7703 -hsa-mir-6799 hsa-miR-6799-5p mir-6799/5p -hsa-mir-6799 hsa-miR-6799-3p mir-6799/3p -hsa-mir-6798 hsa-miR-6798-5p mir-6798/5p -hsa-mir-6798 hsa-miR-6798-3p mir-6798/3p -hsa-mir-6797 hsa-miR-6797-5p mir-6797/5p -hsa-mir-6797 hsa-miR-6797-3p mir-6797/3p -hsa-mir-7706 hsa-miR-7706 mir-7706/7706 -hsa-mir-6796 hsa-miR-6796-5p mir-6796/5p -hsa-mir-6796 hsa-miR-6796-3p mir-6796/3p -hsa-mir-6795 hsa-miR-6795-5p mir-6795/5p -hsa-mir-6795 hsa-miR-6795-3p mir-6795/3p -hsa-mir-6794 hsa-miR-6794-5p mir-6794/5p -hsa-mir-6794 hsa-miR-6794-3p mir-6794/3p -hsa-mir-7844 hsa-miR-7844-5p mir-7844/5p -hsa-mir-7845 hsa-miR-7845-5p mir-7845/5p -hsa-mir-7846 hsa-miR-7846-3p mir-7846/3p -hsa-mir-7849 hsa-miR-7849-3p mir-7849/3p -hsa-mir-7850 hsa-miR-7850-5p mir-7850/5p -hsa-mir-6793 hsa-miR-6793-5p mir-6793/5p -hsa-mir-6793 hsa-miR-6793-3p mir-6793/3p -hsa-mir-7852 hsa-miR-7852-3p mir-7852/3p -hsa-mir-7854 hsa-miR-7854-3p mir-7854/3p -hsa-mir-7855 hsa-miR-7855-5p mir-7855/5p -hsa-mir-7856 hsa-miR-7856-5p mir-7856/5p -hsa-mir-548ba hsa-miR-548ba mir-548ba/548ba -hsa-mir-6792 hsa-miR-6792-5p mir-6792/5p -hsa-mir-6792 hsa-miR-6792-3p mir-6792/3p -hsa-mir-6791 hsa-miR-6791-5p mir-6791/5p -hsa-mir-6791 hsa-miR-6791-3p mir-6791/3p -hsa-mir-6790 hsa-miR-6790-5p mir-6790/5p -hsa-mir-6790 hsa-miR-6790-3p mir-6790/3p -hsa-mir-6789 hsa-miR-6789-5p mir-6789/5p -hsa-mir-6789 hsa-miR-6789-3p mir-6789/3p -hsa-mir-6788 hsa-miR-6788-5p mir-6788/5p -hsa-mir-7974 hsa-miR-7974 mir-7974/7974 -hsa-mir-7976 hsa-miR-7976 mir-7976/7976 -hsa-mir-7977 hsa-miR-7977 mir-7977/7977 -hsa-mir-7978 hsa-miR-7978 mir-7978/7978 -hsa-mir-8054 hsa-miR-8054 mir-8054/8054 -hsa-mir-6721 hsa-miR-6721-5p mir-6721/5p -hsa-mir-8056 hsa-miR-8056 mir-8056/8056 -hsa-mir-6788 hsa-miR-6788-3p mir-6788/3p -hsa-mir-6787 hsa-miR-6787-5p mir-6787/5p -hsa-mir-6787 hsa-miR-6787-3p mir-6787/3p -hsa-mir-6786 hsa-miR-6786-5p mir-6786/5p -hsa-mir-6786 hsa-miR-6786-3p mir-6786/3p -hsa-mir-6785 hsa-miR-6785-5p mir-6785/5p -hsa-mir-8058 hsa-miR-8058 mir-8058/8058 -hsa-mir-8060 hsa-miR-8060 mir-8060/8060 -hsa-mir-8062 hsa-miR-8062 mir-8062/8062 -hsa-mir-8065 hsa-miR-8065 mir-8065/8065 -hsa-mir-6785 hsa-miR-6785-3p mir-6785/3p -hsa-mir-6784 hsa-miR-6784-5p mir-6784/5p -hsa-mir-8066 hsa-miR-8066 mir-8066/8066 -hsa-mir-6784 hsa-miR-6784-3p mir-6784/3p -hsa-mir-6783 hsa-miR-6783-5p mir-6783/5p -hsa-mir-8067 hsa-miR-8067 mir-8067/8067 -hsa-mir-8070 hsa-miR-8070 mir-8070/8070 -hsa-mir-8071-1 hsa-miR-8071 mir-8071-1/8071 -hsa-mir-8073 hsa-miR-8073 mir-8073/8073 -hsa-mir-8074 hsa-miR-8074 mir-8074/8074 -hsa-mir-6783 hsa-miR-6783-3p mir-6783/3p -hsa-mir-6782 hsa-miR-6782-5p mir-6782/5p -hsa-mir-8075 hsa-miR-8075 mir-8075/8075 -hsa-mir-8077 hsa-miR-8077 mir-8077/8077 -hsa-mir-8079 hsa-miR-8079 mir-8079/8079 -hsa-mir-8080 hsa-miR-8080 mir-8080/8080 -hsa-mir-8082 hsa-miR-8082 mir-8082/8082 -hsa-mir-8085 hsa-miR-8085 mir-8085/8085 -hsa-mir-6782 hsa-miR-6782-3p mir-6782/3p -hsa-mir-6781 hsa-miR-6781-5p mir-6781/5p -hsa-mir-8086 hsa-miR-8086 mir-8086/8086 -hsa-mir-8087 hsa-miR-8087 mir-8087/8087 -hsa-mir-8089 hsa-miR-8089 mir-8089/8089 -hsa-mir-6781 hsa-miR-6781-3p mir-6781/3p -hsa-mir-6780b hsa-miR-6780b-5p mir-6780b/5p -hsa-mir-6780b hsa-miR-6780b-3p mir-6780b/3p -hsa-mir-6780a hsa-miR-6780a-5p mir-6780a/5p -hsa-mir-10226 hsa-miR-10226 mir-10226/10226 -hsa-mir-6780a hsa-miR-6780a-3p mir-6780a/3p -hsa-mir-6779 hsa-miR-6779-5p mir-6779/5p -hsa-mir-6779 hsa-miR-6779-3p mir-6779/3p -hsa-mir-6778 hsa-miR-6778-5p mir-6778/5p -hsa-mir-6778 hsa-miR-6778-3p mir-6778/3p -hsa-mir-6777 hsa-miR-6777-5p mir-6777/5p -hsa-mir-6777 hsa-miR-6777-3p mir-6777/3p -hsa-mir-6776 hsa-miR-6776-5p mir-6776/5p -hsa-mir-6776 hsa-miR-6776-3p mir-6776/3p -hsa-mir-6775 hsa-miR-6775-5p mir-6775/5p -hsa-mir-6775 hsa-miR-6775-3p mir-6775/3p -hsa-mir-6774 hsa-miR-6774-5p mir-6774/5p -hsa-mir-6774 hsa-miR-6774-3p mir-6774/3p -hsa-mir-6773 hsa-miR-6773-5p mir-6773/5p -hsa-mir-6773 hsa-miR-6773-3p mir-6773/3p -hsa-mir-6772 hsa-miR-6772-5p mir-6772/5p -hsa-mir-6772 hsa-miR-6772-3p mir-6772/3p -hsa-mir-6771 hsa-miR-6771-5p mir-6771/5p -hsa-mir-6771 hsa-miR-6771-3p mir-6771/3p -hsa-mir-6770-3 hsa-miR-6770-5p mir-6770-3/5p -hsa-mir-6770-3 hsa-miR-6770-3p mir-6770-3/3p -hsa-mir-6770-2 hsa-miR-6770-5p mir-6770-2/5p -hsa-mir-6770-2 hsa-miR-6770-3p mir-6770-2/3p -hsa-mir-6770-1 hsa-miR-6770-5p mir-6770-1/5p -hsa-mir-6844 hsa-miR-6844 mir-6844/6844 -hsa-mir-6770-1 hsa-miR-6770-3p mir-6770-1/3p -hsa-mir-6769b hsa-miR-6769b-5p mir-6769b/5p -hsa-mir-6769b hsa-miR-6769b-3p mir-6769b/3p -hsa-mir-6769a hsa-miR-6769a-5p mir-6769a/5p -hsa-mir-6769a hsa-miR-6769a-3p mir-6769a/3p -hsa-mir-6768 hsa-miR-6768-5p mir-6768/5p -hsa-mir-6768 hsa-miR-6768-3p mir-6768/3p -hsa-mir-6767 hsa-miR-6767-5p mir-6767/5p -hsa-mir-6767 hsa-miR-6767-3p mir-6767/3p -hsa-mir-6766 hsa-miR-6766-5p mir-6766/5p -hsa-mir-6766 hsa-miR-6766-3p mir-6766/3p -hsa-mir-6765 hsa-miR-6765-5p mir-6765/5p -hsa-mir-6765 hsa-miR-6765-3p mir-6765/3p -hsa-mir-6764 hsa-miR-6764-5p mir-6764/5p -hsa-mir-6764 hsa-miR-6764-3p mir-6764/3p -hsa-mir-6763 hsa-miR-6763-5p mir-6763/5p -hsa-mir-6763 hsa-miR-6763-3p mir-6763/3p -hsa-mir-6762 hsa-miR-6762-5p mir-6762/5p -hsa-mir-6762 hsa-miR-6762-3p mir-6762/3p -hsa-mir-6761 hsa-miR-6761-5p mir-6761/5p -hsa-mir-9983 hsa-miR-9983-3p mir-9983/3p -hsa-mir-6761 hsa-miR-6761-3p mir-6761/3p -hsa-mir-6760 hsa-miR-6760-5p mir-6760/5p -hsa-mir-6760 hsa-miR-6760-3p mir-6760/3p -hsa-mir-676 hsa-miR-676-5p mir-676/5p -hsa-mir-676 hsa-miR-676-3p mir-676/3p -hsa-mir-676 hsa-miR-676* mir-676/676* -hsa-mir-676 hsa-miR-676 mir-676/676 -hsa-mir-6759 hsa-miR-6759-5p mir-6759/5p -hsa-mir-6759 hsa-miR-6759-3p mir-6759/3p -hsa-mir-6758 hsa-miR-6758-5p mir-6758/5p -hsa-mir-6758 hsa-miR-6758-3p mir-6758/3p -hsa-mir-6757 hsa-miR-6757-5p mir-6757/5p -hsa-mir-6757 hsa-miR-6757-3p mir-6757/3p -hsa-mir-6756 hsa-miR-6756-5p mir-6756/5p -hsa-mir-6756 hsa-miR-6756-3p mir-6756/3p -hsa-mir-6755 hsa-miR-6755-5p mir-6755/5p -hsa-mir-6755 hsa-miR-6755-3p mir-6755/3p -hsa-mir-6754 hsa-miR-6754-5p mir-6754/5p -hsa-mir-6754 hsa-miR-6754-3p mir-6754/3p -hsa-mir-6753 hsa-miR-6753-5p mir-6753/5p -hsa-mir-6753 hsa-miR-6753-3p mir-6753/3p -hsa-mir-6752 hsa-miR-6752-5p mir-6752/5p -hsa-mir-6752 hsa-miR-6752-3p mir-6752/3p -hsa-mir-6751 hsa-miR-6751-5p mir-6751/5p -hsa-mir-6751 hsa-miR-6751-3p mir-6751/3p -hsa-mir-6750 hsa-miR-6750-5p mir-6750/5p -hsa-mir-6750 hsa-miR-6750-3p mir-6750/3p -hsa-mir-675 hsa-miR-675-5p mir-675/5p -hsa-mir-675 hsa-miR-675-3p mir-675/3p -hsa-mir-675 hsa-miR-675b mir-675/675b -hsa-mir-675 hsa-miR-675 mir-675/675 -hsa-mir-675 hsa-miR-675* mir-675/675* -hsa-mir-6749 hsa-miR-6749-5p mir-6749/5p -hsa-mir-6749 hsa-miR-6749-3p mir-6749/3p -hsa-mir-3687-1 hsa-miR-3687 mir-3687-1/3687 -hsa-mir-6748 hsa-miR-6748-5p mir-6748/5p -hsa-mir-6748 hsa-miR-6748-3p mir-6748/3p -hsa-mir-6747 hsa-miR-6747-5p mir-6747/5p -hsa-mir-6747 hsa-miR-6747-3p mir-6747/3p -hsa-mir-7515 hsa-miR-7515 mir-7515/7515 -hsa-mir-6746 hsa-miR-6746-5p mir-6746/5p -hsa-mir-6746 hsa-miR-6746-3p mir-6746/3p -hsa-mir-6744 hsa-miR-6744-5p mir-6744/5p -hsa-mir-6744 hsa-miR-6744-3p mir-6744/3p -hsa-mir-6743 hsa-miR-6743-5p mir-6743/5p -hsa-mir-6743 hsa-miR-6743-3p mir-6743/3p -hsa-mir-6742 hsa-miR-6742-5p mir-6742/5p -hsa-mir-6742 hsa-miR-6742-3p mir-6742/3p -hsa-mir-6741 hsa-miR-6741-5p mir-6741/5p -hsa-mir-6741 hsa-miR-6741-3p mir-6741/3p -hsa-mir-6740 hsa-miR-6740-5p mir-6740/5p -hsa-mir-6740 hsa-miR-6740-3p mir-6740/3p -hsa-mir-6739 hsa-miR-6739-5p mir-6739/5p -hsa-mir-6739 hsa-miR-6739-3p mir-6739/3p -hsa-mir-6738 hsa-miR-6738-5p mir-6738/5p -hsa-mir-6738 hsa-miR-6738-3p mir-6738/3p -hsa-mir-7973-1 hsa-miR-7973 mir-7973-1/7973 -hsa-mir-6737 hsa-miR-6737-5p mir-6737/5p -hsa-mir-6737 hsa-miR-6737-3p mir-6737/3p -hsa-mir-6736 hsa-miR-6736-5p mir-6736/5p -hsa-mir-6736 hsa-miR-6736-3p mir-6736/3p -hsa-mir-6735 hsa-miR-6735-5p mir-6735/5p -hsa-mir-8061 hsa-miR-8061 mir-8061/8061 -hsa-mir-6735 hsa-miR-6735-3p mir-6735/3p -hsa-mir-6734 hsa-miR-6734-5p mir-6734/5p -hsa-mir-6734 hsa-miR-6734-3p mir-6734/3p -hsa-mir-6733 hsa-miR-6733-5p mir-6733/5p -hsa-mir-6733 hsa-miR-6733-3p mir-6733/3p -hsa-mir-6732 hsa-miR-6732-5p mir-6732/5p -hsa-mir-6732 hsa-miR-6732-3p mir-6732/3p -hsa-mir-6731 hsa-miR-6731-5p mir-6731/5p -hsa-mir-6731 hsa-miR-6731-3p mir-6731/3p -hsa-mir-6730 hsa-miR-6730-5p mir-6730/5p -hsa-mir-6730 hsa-miR-6730-3p mir-6730/3p -hsa-mir-6729 hsa-miR-6729-5p mir-6729/5p -hsa-mir-6729 hsa-miR-6729-3p mir-6729/3p -hsa-mir-6728 hsa-miR-6728-5p mir-6728/5p -hsa-mir-8069 hsa-miR-8069 mir-8069/8069 -hsa-mir-8069-1 hsa-miR-8069 mir-8069-1/8069 -hsa-mir-6728 hsa-miR-6728-3p mir-6728/3p -hsa-mir-6727 hsa-miR-6727-5p mir-6727/5p -hsa-mir-6727 hsa-miR-6727-3p mir-6727/3p -hsa-mir-6726 hsa-miR-6726-5p mir-6726/5p -hsa-mir-6726 hsa-miR-6726-3p mir-6726/3p -hsa-mir-6722 hsa-miR-6722-5p mir-6722/5p -hsa-mir-6722 hsa-miR-6722-3p mir-6722/3p -hsa-mir-6720 hsa-miR-6720-5p mir-6720/5p -hsa-mir-6720 hsa-miR-6720-3p mir-6720/3p -hsa-mir-6716 hsa-miR-6716-5p mir-6716/5p -hsa-mir-6716 hsa-miR-6716-3p mir-6716/3p -hsa-mir-6715b hsa-miR-6715b-5p mir-6715b/5p -hsa-mir-6715b hsa-miR-6715b-3p mir-6715b/3p -hsa-mir-671 hsa-miR-671-5p mir-671/5p -hsa-mir-671 hsa-miR-671 mir-671/671 -hsa-mir-671 hsa-miR-671-3p mir-671/3p -hsa-mir-668 hsa-miR-668-5p mir-668/5p -hsa-mir-6719 hsa-miR-6719-3p mir-6719/3p -hsa-mir-668 hsa-miR-668-3p mir-668/3p -hsa-mir-668 hsa-miR-668 mir-668/668 -hsa-mir-664a hsa-miR-664a-5p mir-664a/5p -hsa-mir-664a hsa-miR-664-5p mir-664a/5p -hsa-mir-664a hsa-miR-664a-3p mir-664a/3p -hsa-mir-664a hsa-miR-664 mir-664a/664 -hsa-mir-664a hsa-miR-664-3p mir-664a/3p -hsa-mir-664 hsa-miR-664a-5p mir-664/5p -hsa-mir-664 hsa-miR-664-5p mir-664/5p -hsa-mir-664 hsa-miR-664a-3p mir-664/3p -hsa-mir-664 hsa-miR-664-3p mir-664/3p -hsa-mir-664 hsa-miR-664* mir-664/664* -hsa-mir-664 hsa-miR-664 mir-664/664 -hsa-mir-663 hsa-miR-663a mir-663/663a -hsa-mir-663 hsa-miR-663 mir-663/663 -hsa-mir-660 hsa-miR-660-5p mir-660/5p -hsa-mir-660 hsa-miR-660-3p mir-660/3p -hsa-mir-660 hsa-miR-660 mir-660/660 -hsa-mir-5739 hsa-miR-5739 mir-5739/5739 -hsa-mir-6075 hsa-miR-6075 mir-6075/6075 -hsa-mir-6090 hsa-miR-6090 mir-6090/6090 -hsa-mir-659 hsa-miR-659-5p mir-659/5p -hsa-mir-659 hsa-miR-659-3p mir-659/3p -hsa-mir-659 hsa-miR-659 mir-659/659 -hsa-mir-656 hsa-miR-656-5p mir-656/5p -hsa-mir-656 hsa-miR-656-3p mir-656/3p -hsa-mir-656 hsa-miR-656 mir-656/656 -hsa-mir-655 hsa-miR-655-5p mir-655/5p -hsa-mir-655 hsa-miR-655-3p mir-655/3p -hsa-mir-655 hsa-miR-655 mir-655/655 -hsa-mir-654 hsa-miR-654-5p mir-654/5p -hsa-mir-654 hsa-miR-654 mir-654/654 -hsa-mir-6715a hsa-miR-6715a-3p mir-6715a/3p -hsa-mir-654 hsa-miR-654-3p mir-654/3p -hsa-mir-653 hsa-miR-653-5p mir-653/5p -hsa-mir-653 hsa-miR-653-3p mir-653/3p -hsa-mir-653 hsa-miR-653 mir-653/653 -hsa-mir-652 hsa-miR-652-5p mir-652/5p -hsa-mir-652 hsa-miR-652-3p mir-652/3p -hsa-mir-652 hsa-miR-652 mir-652/652 -hsa-mir-6516 hsa-miR-6516-5p mir-6516/5p -hsa-mir-6516 hsa-miR-6516-3p mir-6516/3p -hsa-mir-6515 hsa-miR-6515-5p mir-6515/5p -hsa-mir-6515 hsa-miR-6515-3p mir-6515/3p -hsa-mir-6514 hsa-miR-6514-5p mir-6514/5p -hsa-mir-6514 hsa-miR-6514-3p mir-6514/3p -hsa-mir-6513 hsa-miR-6513-5p mir-6513/5p -hsa-mir-6513 hsa-miR-6513-3p mir-6513/3p -hsa-mir-6512 hsa-miR-6512-5p mir-6512/5p -hsa-mir-6512 hsa-miR-6512-3p mir-6512/3p -hsa-mir-6511b-2 hsa-miR-6511b-5p mir-6511b-2/5p -hsa-mir-6511b-2 hsa-miR-6511b-3p mir-6511b-2/3p -hsa-mir-6511b-1 hsa-miR-6511b-5p mir-6511b-1/5p -hsa-mir-6511b-1 hsa-miR-6511b-3p mir-6511b-1/3p -hsa-mir-6511a-4 hsa-miR-6511a-5p mir-6511a-4/5p -hsa-mir-6511a-4 hsa-miR-6511a-3p mir-6511a-4/3p -hsa-mir-6511a-3 hsa-miR-6511a-5p mir-6511a-3/5p -hsa-mir-6511a-3 hsa-miR-6511a-3p mir-6511a-3/3p -hsa-mir-6511a-2 hsa-miR-6511a-5p mir-6511a-2/5p -hsa-mir-6511a-2 hsa-miR-6511a-3p mir-6511a-2/3p -hsa-mir-6511a-1 hsa-miR-6511a-5p mir-6511a-1/5p -hsa-mir-6511a-1 hsa-miR-6511a-3p mir-6511a-1/3p -hsa-mir-6510 hsa-miR-6510-5p mir-6510/5p -hsa-mir-6510 hsa-miR-6510-3p mir-6510/3p -hsa-mir-651 hsa-miR-651-5p mir-651/5p -hsa-mir-651 hsa-miR-651-3p mir-651/3p -hsa-mir-651 hsa-miR-651 mir-651/651 -hsa-mir-6509 hsa-miR-6509-5p mir-6509/5p -hsa-mir-6509 hsa-miR-6509-3p mir-6509/3p -hsa-mir-6508 hsa-miR-6508-5p mir-6508/5p -hsa-mir-6508 hsa-miR-6508-3p mir-6508/3p -hsa-mir-6507 hsa-miR-6507-5p mir-6507/5p -hsa-mir-6507 hsa-miR-6507-3p mir-6507/3p -hsa-mir-6506 hsa-miR-6506-5p mir-6506/5p -hsa-mir-6506 hsa-miR-6506-3p mir-6506/3p -hsa-mir-6505 hsa-miR-6505-5p mir-6505/5p -hsa-mir-6077 hsa-miR-6077 mir-6077/6077 -hsa-mir-6077-1 hsa-miR-6077 mir-6077-1/6077 -hsa-mir-6505 hsa-miR-6505-3p mir-6505/3p -hsa-mir-6504 hsa-miR-6504-5p mir-6504/5p -hsa-mir-6504 hsa-miR-6504-3p mir-6504/3p -hsa-mir-6503 hsa-miR-6503-5p mir-6503/5p -hsa-mir-6503 hsa-miR-6503-3p mir-6503/3p -hsa-mir-6502 hsa-miR-6502-5p mir-6502/5p -hsa-mir-6502 hsa-miR-6502-3p mir-6502/3p -hsa-mir-6501 hsa-miR-6501-5p mir-6501/5p -hsa-mir-6501 hsa-miR-6501-3p mir-6501/3p -hsa-mir-6500 hsa-miR-6500-5p mir-6500/5p -hsa-mir-6500 hsa-miR-6500-3p mir-6500/3p -hsa-mir-6499 hsa-miR-6499-5p mir-6499/5p -hsa-mir-6499 hsa-miR-6499-3p mir-6499/3p -hsa-mir-644a hsa-miR-644a mir-644a/644a -hsa-mir-6081 hsa-miR-6081 mir-6081/6081 -hsa-mir-644a hsa-miR-644 mir-644a/644 -hsa-mir-644 hsa-miR-644a mir-644/644a -hsa-mir-644 hsa-miR-644 mir-644/644 -hsa-mir-642b hsa-miR-642b-5p mir-642b/5p -hsa-mir-642b hsa-miR-642b-3p mir-642b/3p -hsa-mir-642b hsa-miR-642b mir-642b/642b -hsa-mir-642a hsa-miR-642a-5p mir-642a/5p -hsa-mir-8076 hsa-miR-8076 mir-8076/8076 -hsa-mir-642a hsa-miR-642 mir-642a/642 -hsa-mir-642a hsa-miR-642a-3p mir-642a/3p -hsa-mir-642a hsa-miR-642a mir-642a/642a -hsa-mir-642 hsa-miR-642a-5p mir-642/5p -hsa-mir-642 hsa-miR-642 mir-642/642 -hsa-mir-642 hsa-miR-642a mir-642/642a -hsa-mir-642 hsa-miR-642a-3p mir-642/3p -hsa-mir-629 hsa-miR-629-5p mir-629/5p -hsa-mir-629 hsa-miR-629-3p mir-629/3p -hsa-mir-629 hsa-miR-629 mir-629/629 -hsa-mir-629 hsa-miR-629* mir-629/629* -hsa-mir-628 hsa-miR-628-5p mir-628/5p -hsa-mir-628 hsa-miR-628-3p mir-628/3p -hsa-mir-628 hsa-miR-628 mir-628/628 -hsa-mir-6071 hsa-miR-6071 mir-6071/6071 -hsa-mir-5694 hsa-miR-5694 mir-5694/5694 -hsa-mir-6086 hsa-miR-6086 mir-6086/6086 -hsa-mir-627 hsa-miR-627-5p mir-627/5p -hsa-mir-627 hsa-miR-627-3p mir-627/3p -hsa-mir-627 hsa-miR-627 mir-627/627 -hsa-mir-625 hsa-miR-625-5p mir-625/5p -hsa-mir-6127 hsa-miR-6127 mir-6127/6127 -hsa-mir-625 hsa-miR-625-3p mir-625/3p -hsa-mir-625 hsa-miR-625 mir-625/625 -hsa-mir-625 hsa-miR-625* mir-625/625* -hsa-mir-624 hsa-miR-624-5p mir-624/5p -hsa-mir-624 hsa-miR-624-3p mir-624/3p -hsa-mir-624 hsa-miR-624* mir-624/624* -hsa-mir-624 hsa-miR-624 mir-624/624 -hsa-mir-619 hsa-miR-619-5p mir-619/5p -hsa-mir-619 hsa-miR-619-3p mir-619/3p -hsa-mir-619 hsa-miR-619 mir-619/619 -hsa-mir-616 hsa-miR-616-5p mir-616/5p -hsa-mir-616 hsa-miR-616-3p mir-616/3p -hsa-mir-6132 hsa-miR-6132 mir-6132/6132 -hsa-mir-616 hsa-miR-616* mir-616/616* -hsa-mir-616 hsa-miR-616 mir-616/616 -hsa-mir-615 hsa-miR-615-5p mir-615/5p -hsa-mir-615 hsa-miR-615-3p mir-615/3p -hsa-mir-615 hsa-miR-615 mir-615/615 -hsa-mir-605 hsa-miR-605-5p mir-605/5p -hsa-mir-605 hsa-miR-605-3p mir-605/3p -hsa-mir-605 hsa-miR-605 mir-605/605 -hsa-mir-598 hsa-miR-598-5p mir-598/5p -hsa-mir-598 hsa-miR-598-3p mir-598/3p -hsa-mir-598 hsa-miR-598 mir-598/598 -hsa-mir-597 hsa-miR-597-5p mir-597/5p -hsa-mir-597 hsa-miR-597-3p mir-597/3p -hsa-mir-597 hsa-miR-597 mir-597/597 -hsa-mir-593 hsa-miR-593-5p mir-593/5p -hsa-mir-593 hsa-miR-593-3p mir-593/3p -hsa-mir-593 hsa-miR-593* mir-593/593* -hsa-mir-593 hsa-miR-593 mir-593/593 -hsa-mir-590 hsa-miR-590-5p mir-590/5p -hsa-mir-590 hsa-miR-590 mir-590/590 -hsa-mir-590 hsa-miR-590-3p mir-590/3p -hsa-mir-589 hsa-miR-589-5p mir-589/5p -hsa-mir-589 hsa-miR-589-3p mir-589/3p -hsa-mir-589 hsa-miR-589 mir-589/589 -hsa-mir-589 hsa-miR-589* mir-589/589* -hsa-mir-585 hsa-miR-585-5p mir-585/5p -hsa-mir-585 hsa-miR-585-3p mir-585/3p -hsa-mir-585 hsa-miR-585 mir-585/585 -hsa-mir-584 hsa-miR-584-5p mir-584/5p -hsa-mir-584 hsa-miR-584-3p mir-584/3p -hsa-mir-584 hsa-miR-584 mir-584/584 -hsa-mir-582 hsa-miR-582-5p mir-582/5p -hsa-mir-582 hsa-miR-582 mir-582/582 -hsa-mir-582 hsa-miR-582-3p mir-582/3p -hsa-mir-580 hsa-miR-580-5p mir-580/5p -hsa-mir-580 hsa-miR-580-3p mir-580/3p -hsa-mir-580 hsa-miR-580 mir-580/580 -hsa-mir-579 hsa-miR-579-5p mir-579/5p -hsa-mir-579 hsa-miR-579-3p mir-579/3p -hsa-mir-579 hsa-miR-579 mir-579/579 -hsa-mir-576 hsa-miR-576-5p mir-576/5p -hsa-mir-576 hsa-miR-576 mir-576/576 -hsa-mir-576 hsa-miR-576-3p mir-576/3p -hsa-mir-574 hsa-miR-574-5p mir-574/5p -hsa-mir-574 hsa-miR-574-3p mir-574/3p -hsa-mir-574 hsa-miR-574 mir-574/574 -hsa-mir-570 hsa-miR-570-5p mir-570/5p -hsa-mir-570 hsa-miR-570-3p mir-570/3p -hsa-mir-570 hsa-miR-570 mir-570/570 -hsa-mir-561 hsa-miR-561-5p mir-561/5p -hsa-mir-561 hsa-miR-561-3p mir-561/3p -hsa-mir-561 hsa-miR-561 mir-561/561 -hsa-mir-5588 hsa-miR-5588-5p mir-5588/5p -hsa-mir-5588 hsa-miR-5588-3p mir-5588/3p -hsa-mir-5587 hsa-miR-5587-5p mir-5587/5p -hsa-mir-5587 hsa-miR-5587-3p mir-5587/3p -hsa-mir-5585 hsa-miR-5585-5p mir-5585/5p -hsa-mir-5585 hsa-miR-5585-3p mir-5585/3p -hsa-mir-5583-2 hsa-miR-5583-5p mir-5583-2/5p -hsa-mir-5583-2 hsa-miR-5583-3p mir-5583-2/3p -hsa-mir-5583-1 hsa-miR-5583-5p mir-5583-1/5p -hsa-mir-5583-1 hsa-miR-5583-3p mir-5583-1/3p -hsa-mir-5582 hsa-miR-5582-5p mir-5582/5p -hsa-mir-5582 hsa-miR-5582-3p mir-5582/3p -hsa-mir-5581 hsa-miR-5581-5p mir-5581/5p -hsa-mir-5581 hsa-miR-5581-3p mir-5581/3p -hsa-mir-5579 hsa-miR-5579-5p mir-5579/5p -hsa-mir-5579 hsa-miR-5579-3p mir-5579/3p -hsa-mir-5571 hsa-miR-5571-5p mir-5571/5p -hsa-mir-5571 hsa-miR-5571-3p mir-5571/3p -hsa-mir-556 hsa-miR-556-5p mir-556/5p -hsa-mir-556 hsa-miR-556 mir-556/556 -hsa-mir-556 hsa-miR-556-3p mir-556/3p -hsa-mir-552 hsa-miR-552-5p mir-552/5p -hsa-mir-552 hsa-miR-552-3p mir-552/3p -hsa-mir-552 hsa-miR-552 mir-552/552 -hsa-mir-551b hsa-miR-551b-5p mir-551b/5p -hsa-mir-551b hsa-miR-551b-3p mir-551b/3p -hsa-mir-551b hsa-miR-551b* mir-551b/551b* -hsa-mir-551b hsa-miR-551b mir-551b/551b -hsa-mir-550b-2 hsa-miR-550b-2-5p mir-550b-2/5p -hsa-mir-550b-2 hsa-miR-550b-3p mir-550b-2/3p -hsa-mir-550b-2 hsa-miR-550b mir-550b-2/550b -hsa-mir-550b-1 hsa-miR-550b-2-5p mir-550b-1/5p -hsa-mir-550b-1 hsa-miR-550b-3p mir-550b-1/3p -hsa-mir-550b-1 hsa-miR-550b mir-550b-1/550b -hsa-mir-550a-3 hsa-miR-550a-3-5p mir-550a-3/5p -hsa-mir-550a-3 hsa-miR-550a-3p mir-550a-3/3p -hsa-mir-550a-3 hsa-miR-550 mir-550a-3/550 -hsa-mir-550a-3 hsa-miR-550a* mir-550a-3/550a* -hsa-mir-550a-2 hsa-miR-550a-5p mir-550a-2/5p -hsa-mir-550a-2 hsa-miR-550 mir-550a-2/550 -hsa-mir-550a-2 hsa-miR-550a-3p mir-550a-2/3p -hsa-mir-550a-2 hsa-miR-550a mir-550a-2/550a -hsa-mir-550a-2 hsa-miR-550a* mir-550a-2/550a* -hsa-mir-550a-1 hsa-miR-550a-5p mir-550a-1/5p -hsa-mir-550a-1 hsa-miR-550 mir-550a-1/550 -hsa-mir-550a-1 hsa-miR-550a-3p mir-550a-1/3p -hsa-mir-550a-1 hsa-miR-550a mir-550a-1/550a -hsa-mir-550a-1 hsa-miR-550a* mir-550a-1/550a* -hsa-mir-550-2 hsa-miR-550a-5p mir-550-2/5p -hsa-mir-550-2 hsa-miR-550 mir-550-2/550 -hsa-mir-550-2 hsa-miR-550a mir-550-2/550a -hsa-mir-550-2 hsa-miR-550a-3p mir-550-2/3p -hsa-mir-550-1 hsa-miR-550a-5p mir-550-1/5p -hsa-mir-550-1 hsa-miR-550 mir-550-1/550 -hsa-mir-550-1 hsa-miR-550a mir-550-1/550a -hsa-mir-550-1 hsa-miR-550a-3p mir-550-1/3p -hsa-mir-549a hsa-miR-549a-5p mir-549a/5p -hsa-mir-549a hsa-miR-549 mir-549a/549 -hsa-mir-549a hsa-miR-549a-3p mir-549a/3p -hsa-mir-549 hsa-miR-549a-5p mir-549/5p -hsa-mir-549 hsa-miR-549a-3p mir-549/3p -hsa-mir-549 hsa-miR-549 mir-549/549 -hsa-mir-548x-2 hsa-miR-548x-3p mir-548x-2/3p -hsa-mir-548x-2 hsa-miR-548x mir-548x-2/548x -hsa-mir-548x hsa-miR-548x-5p mir-548x/5p -hsa-mir-548x hsa-miR-548x-3p mir-548x/3p -hsa-mir-548x hsa-miR-548x mir-548x/548x -hsa-mir-548t hsa-miR-548t-5p mir-548t/5p -hsa-mir-548t hsa-miR-548t-3p mir-548t/3p -hsa-mir-548t hsa-miR-548t mir-548t/548t -hsa-mir-548o-2 hsa-miR-548o-5p mir-548o-2/5p -hsa-mir-548o-2 hsa-miR-548o-3p mir-548o-2/3p -hsa-mir-548o-2 hsa-miR-548o mir-548o-2/548o -hsa-mir-548h-5 hsa-miR-548h-5p mir-548h-5/5p -hsa-mir-548h-5 hsa-miR-548h mir-548h-5/548h -hsa-mir-548f-5 hsa-miR-548f-3p mir-548f-5/3p -hsa-mir-548f-5 hsa-miR-548f mir-548f-5/548f -hsa-mir-548f-3 hsa-miR-548f-3p mir-548f-3/3p -hsa-mir-548f-3 hsa-miR-548f mir-548f-3/548f -hsa-mir-548f-1 hsa-miR-548f-5p mir-548f-1/5p -hsa-mir-548f-1 hsa-miR-548f-3p mir-548f-1/3p -hsa-mir-548f-1 hsa-miR-548f mir-548f-1/548f -hsa-mir-548d-2 hsa-miR-548d-5p mir-548d-2/5p -hsa-mir-548d-2 hsa-miR-548d-3p mir-548d-2/3p -hsa-mir-548d-2 hsa-miR-548d mir-548d-2/548d -hsa-mir-548d-1 hsa-miR-548d-5p mir-548d-1/5p -hsa-mir-548d-1 hsa-miR-548d-3p mir-548d-1/3p -hsa-mir-548d-1 hsa-miR-548d mir-548d-1/548d -hsa-mir-548c hsa-miR-548c-5p mir-548c/5p -hsa-mir-548c hsa-miR-548c-3p mir-548c/3p -hsa-mir-548c hsa-miR-548c mir-548c/548c -hsa-mir-548bb hsa-miR-548bb-5p mir-548bb/5p -hsa-mir-548bb hsa-miR-548bb-3p mir-548bb/3p -hsa-mir-548b hsa-miR-548b-5p mir-548b/5p -hsa-mir-548b hsa-miR-548b-3p mir-548b/3p -hsa-mir-548az hsa-miR-548az-5p mir-548az/5p -hsa-mir-548az hsa-miR-548az-3p mir-548az/3p -hsa-mir-548ay hsa-miR-548ay-5p mir-548ay/5p -hsa-mir-548ay hsa-miR-548ay-3p mir-548ay/3p -hsa-mir-548au hsa-miR-548au-5p mir-548au/5p -hsa-mir-548au hsa-miR-548au-3p mir-548au/3p -hsa-mir-548at hsa-miR-548at-5p mir-548at/5p -hsa-mir-548at hsa-miR-548at-3p mir-548at/3p -hsa-mir-548ar hsa-miR-548ar-5p mir-548ar/5p -hsa-mir-548ar hsa-miR-548ar-3p mir-548ar/3p -hsa-mir-548ap hsa-miR-548ap-5p mir-548ap/5p -hsa-mir-548ap hsa-miR-548ap-3p mir-548ap/3p -hsa-mir-548am hsa-miR-548am-5p mir-548am/5p -hsa-mir-548am hsa-miR-548am-3p mir-548am/3p -hsa-mir-548am hsa-miR-548am mir-548am/548am -hsa-mir-548aj-2 hsa-miR-548aj-5p mir-548aj-2/5p -hsa-mir-548aj-2 hsa-miR-548aj-3p mir-548aj-2/3p -hsa-mir-548aj-2 hsa-miR-548aj mir-548aj-2/548aj -hsa-mir-548aj-1 hsa-miR-548aj-3p mir-548aj-1/3p -hsa-mir-548aj-1 hsa-miR-548aj mir-548aj-1/548aj -hsa-mir-548ah hsa-miR-548ah-5p mir-548ah/5p -hsa-mir-548ah hsa-miR-548ah-3p mir-548ah/3p -hsa-mir-548ah hsa-miR-548ah mir-548ah/548ah -hsa-mir-548ae-2 hsa-miR-548ae-5p mir-548ae-2/5p -hsa-mir-548ae-2 hsa-miR-548ae-3p mir-548ae-2/3p -hsa-mir-548ae-2 hsa-miR-548ae mir-548ae-2/548ae -hsa-mir-548ae-1 hsa-miR-548ae-3p mir-548ae-1/3p -hsa-mir-548ae-1 hsa-miR-548ae mir-548ae-1/548ae -hsa-mir-548ad hsa-miR-548ad-5p mir-548ad/5p -hsa-mir-548ad hsa-miR-548ad-3p mir-548ad/3p -hsa-mir-548ad hsa-miR-548ad mir-548ad/548ad -hsa-mir-548a-3 hsa-miR-548a-5p mir-548a-3/5p -hsa-mir-548a-3 hsa-miR-548a-3p mir-548a-3/3p -hsa-mir-548a-3 hsa-miR-548a mir-548a-3/548a -hsa-mir-548a-2 hsa-miR-548a-3p mir-548a-2/3p -hsa-mir-548a-2 hsa-miR-548a mir-548a-2/548a -hsa-mir-548a-2 hsa-miR-548a-3p mir-548a-2/3p -hsa-mir-548a-1 hsa-miR-548a-3p mir-548a-1/3p -hsa-mir-548a-1 hsa-miR-548a mir-548a-1/548a -hsa-mir-548a-1 hsa-miR-548a-3p mir-548a-1/3p -hsa-mir-545 hsa-miR-545-5p mir-545/5p -hsa-mir-545 hsa-miR-545-3p mir-545/3p -hsa-mir-545 hsa-miR-545* mir-545/545* -hsa-mir-545 hsa-miR-545 mir-545/545 -hsa-mir-544 hsa-miR-544a mir-544/544a -hsa-mir-544 hsa-miR-544 mir-544/544 -hsa-mir-542 hsa-miR-542-5p mir-542/5p -hsa-mir-542 hsa-miR-542-3p mir-542/3p -hsa-mir-541 hsa-miR-541-5p mir-541/5p -hsa-mir-541 hsa-miR-541-3p mir-541/3p -hsa-mir-541 hsa-miR-541* mir-541/541* -hsa-mir-541 hsa-miR-541 mir-541/541 -hsa-mir-539 hsa-miR-539-5p mir-539/5p -hsa-mir-539 hsa-miR-539-3p mir-539/3p -hsa-mir-539 hsa-miR-539 mir-539/539 -hsa-mir-532 hsa-miR-532-5p mir-532/5p -hsa-mir-532 hsa-miR-532 mir-532/532 -hsa-mir-532 hsa-miR-532-3p mir-532/3p -hsa-mir-526b hsa-miR-526b-5p mir-526b/5p -hsa-mir-526b hsa-miR-526b-3p mir-526b/3p -hsa-mir-526b hsa-miR-526b mir-526b/526b -hsa-mir-526b hsa-miR-526b* mir-526b/526b* -hsa-mir-526a-2 hsa-miR-526a-5p mir-526a-2/5p -hsa-mir-526a-2 hsa-miR-526a mir-526a-2/526a -hsa-mir-526a-1 hsa-miR-526a-5p mir-526a-1/5p -hsa-mir-526a-1 hsa-miR-526a-3p mir-526a-1/3p -hsa-mir-526a-1 hsa-miR-526a mir-526a-1/526a -hsa-mir-525 hsa-miR-525-5p mir-525/5p -hsa-mir-525 hsa-miR-525 mir-525/525 -hsa-mir-525 hsa-miR-525-3p mir-525/3p -hsa-mir-30 hsa-miR-30a mir-30/30a -hsa-mir-524 hsa-miR-524 mir-524/524 -hsa-mir-524 hsa-miR-524-5p mir-524/5p -hsa-mir-524 hsa-miR-524-3p mir-524/3p -hsa-mir-523 hsa-miR-523-5p mir-523/5p -hsa-mir-523 hsa-miR-523-3p mir-523/3p -hsa-mir-523 hsa-miR-523* mir-523/523* -hsa-mir-523 hsa-miR-523 mir-523/523 -hsa-mir-522 hsa-miR-522-5p mir-522/5p -hsa-mir-522 hsa-miR-522-3p mir-522/3p -hsa-mir-522 hsa-miR-522* mir-522/522* -hsa-mir-522 hsa-miR-522 mir-522/522 -hsa-mir-520g hsa-miR-520g-5p mir-520g/5p -hsa-mir-520g hsa-miR-520g-3p mir-520g/3p -hsa-mir-520g hsa-miR-520g mir-520g/520g -hsa-mir-520f hsa-miR-520f-5p mir-520f/5p -hsa-mir-520f hsa-miR-520f-3p mir-520f/3p -hsa-mir-520f hsa-miR-520f mir-520f/520f -hsa-mir-520e hsa-miR-520e-5p mir-520e/5p -hsa-mir-520e hsa-miR-520e-3p mir-520e/3p -hsa-mir-520e hsa-miR-520e mir-520e/520e -hsa-mir-520d hsa-miR-520d-5p mir-520d/5p -hsa-mir-520d hsa-miR-520d-3p mir-520d/3p -hsa-mir-520d hsa-miR-520d mir-520d/520d -hsa-mir-3648-1 hsa-miR-3648 mir-3648-1/3648 -hsa-mir-520d hsa-miR-520d-5p mir-520d/5p -hsa-mir-520d hsa-miR-520d-3p mir-520d/3p -hsa-mir-520c hsa-miR-520c-5p mir-520c/5p -hsa-mir-520c hsa-miR-520c-3p mir-520c/3p -hsa-mir-520c hsa-miR-520c mir-520c/520c -hsa-mir-520c hsa-miR-520c-5p mir-520c/5p -hsa-mir-520c hsa-miR-520c-3p mir-520c/3p -hsa-mir-520b hsa-miR-520b-5p mir-520b/5p -hsa-mir-520b hsa-miR-520b-3p mir-520b/3p -hsa-mir-520b hsa-miR-520b mir-520b/520b -hsa-mir-520a hsa-miR-520a-5p mir-520a/5p -hsa-mir-520a hsa-miR-520a-3p mir-520a/3p -hsa-mir-520a hsa-miR-520a mir-520a/520a -hsa-mir-519e hsa-miR-519e-5p mir-519e/5p -hsa-mir-519e hsa-miR-519e-3p mir-519e/3p -hsa-mir-519e hsa-miR-519e* mir-519e/519e* -hsa-mir-519e hsa-miR-519e mir-519e/519e -hsa-mir-519d hsa-miR-519d-5p mir-519d/5p -hsa-mir-519d hsa-miR-519d-3p mir-519d/3p -hsa-mir-519d hsa-miR-519d mir-519d/519d -hsa-mir-519c hsa-miR-519c-5p mir-519c/5p -hsa-mir-519c hsa-miR-526c mir-519c/526c -hsa-mir-519c hsa-miR-519c-3p mir-519c/3p -hsa-mir-519c hsa-miR-519c mir-519c/519c -hsa-mir-519c hsa-miR-519c-5p mir-519c/5p -hsa-mir-519c hsa-miR-519c-3p mir-519c/3p -hsa-mir-519b hsa-miR-519b-5p mir-519b/5p -hsa-mir-6863 hsa-miR-6863 mir-6863/6863 -hsa-mir-519b hsa-miR-519b-3p mir-519b/3p -hsa-mir-519b hsa-miR-519b mir-519b/519b -hsa-mir-519a-2 hsa-miR-519a-2-5p mir-519a-2/5p -hsa-mir-519a-2 hsa-miR-519a-3p mir-519a-2/3p -hsa-mir-519a-2 hsa-miR-519a mir-519a-2/519a -hsa-mir-519a-1 hsa-miR-519a-5p mir-519a-1/5p -hsa-mir-519a-1 hsa-miR-519a-3p mir-519a-1/3p -hsa-mir-519a-1 hsa-miR-519a* mir-519a-1/519a* -hsa-mir-519a-1 hsa-miR-519a mir-519a-1/519a -hsa-mir-5197 hsa-miR-5197-5p mir-5197/5p -hsa-mir-5197 hsa-miR-5197-3p mir-5197/3p -hsa-mir-518f hsa-miR-518f-5p mir-518f/5p -hsa-mir-518f hsa-miR-518f-3p mir-518f/3p -hsa-mir-518f hsa-miR-518f* mir-518f/518f* -hsa-mir-518f hsa-miR-518f mir-518f/518f -hsa-mir-518e hsa-miR-518e-5p mir-518e/5p -hsa-mir-518e hsa-miR-518e-3p mir-518e/3p -hsa-mir-518e hsa-miR-518e* mir-518e/518e* -hsa-mir-518e hsa-miR-518e mir-518e/518e -hsa-mir-518d hsa-miR-518d-5p mir-518d/5p -hsa-mir-518d hsa-miR-518d-3p mir-518d/3p -hsa-mir-518d hsa-miR-518d mir-518d/518d -hsa-mir-518c hsa-miR-518c-5p mir-518c/5p -hsa-mir-518c hsa-miR-518c-3p mir-518c/3p -hsa-mir-7705 hsa-miR-7705 mir-7705/7705 -hsa-mir-518c hsa-miR-518c* mir-518c/518c* -hsa-mir-518c hsa-miR-518c mir-518c/518c -hsa-mir-518a-2 hsa-miR-518a-5p mir-518a-2/5p -hsa-mir-518a-2 hsa-miR-518a-3p mir-518a-2/3p -hsa-mir-7848 hsa-miR-7848-3p mir-7848/3p -hsa-mir-518a-2 hsa-miR-518a mir-518a-2/518a -hsa-mir-518a-1 hsa-miR-518a-5p mir-518a-1/5p -hsa-mir-518a-1 hsa-miR-518a-3p mir-518a-1/3p -hsa-mir-517c hsa-miR-517-5p mir-517c/5p -hsa-mir-517c hsa-miR-517c-3p mir-517c/3p -hsa-mir-517c hsa-miR-517c mir-517c/517c -hsa-mir-517c hsa-miR-517* mir-517c/517* -hsa-mir-517b hsa-miR-517-5p mir-517b/5p -hsa-mir-517b hsa-miR-517b-3p mir-517b/3p -hsa-mir-517b hsa-miR-517 mir-517b/517 -hsa-mir-517b hsa-miR-517b mir-517b/517b -hsa-mir-517b hsa-miR-517* mir-517b/517* -hsa-mir-517a hsa-miR-517-5p mir-517a/5p -hsa-mir-3670-1 hsa-miR-3670 mir-3670-1/3670 -hsa-mir-517a hsa-miR-517a-3p mir-517a/3p -hsa-mir-517a hsa-miR-517* mir-517a/517* -hsa-mir-517a hsa-miR-517a mir-517a/517a -hsa-mir-516b-2 hsa-miR-516b-5p mir-516b-2/5p -hsa-mir-516b-2 hsa-miR-516b-3p mir-516b-2/3p -hsa-mir-516b-2 hsa-miR-516b mir-516b-2/516b -hsa-mir-516b-2 hsa-miR-516b* mir-516b-2/516b* -hsa-mir-516b-1 hsa-miR-516b-5p mir-516b-1/5p -hsa-mir-516b-1 hsa-miR-516b-3p mir-516b-1/3p -hsa-mir-516b-1 hsa-miR-516b mir-516b-1/516b -hsa-mir-516b-1 hsa-miR-516b* mir-516b-1/516b* -hsa-mir-516a-2 hsa-miR-516a-5p mir-516a-2/5p -hsa-mir-516a-2 hsa-miR-516a-3p mir-516a-2/3p -hsa-mir-516a-1 hsa-miR-516a-5p mir-516a-1/5p -hsa-mir-516a-1 hsa-miR-516a-3p mir-516a-1/3p -hsa-mir-516-2 hsa-miR-516a-5p mir-516-2/5p -hsa-mir-516-2 hsa-miR-516a-3p mir-516-2/3p -hsa-mir-516-1 hsa-miR-516a-5p mir-516-1/5p -hsa-mir-516-1 hsa-miR-516a-3p mir-516-1/3p -hsa-mir-515-2 hsa-miR-515-5p mir-515-2/5p -hsa-mir-515-2 hsa-miR-515-3p mir-515-2/3p -hsa-mir-515-1 hsa-miR-515-5p mir-515-1/5p -hsa-mir-515-1 hsa-miR-515-3p mir-515-1/3p -hsa-mir-514b hsa-miR-514b-5p mir-514b/5p -hsa-mir-514b hsa-miR-514b-3p mir-514b/3p -hsa-mir-514a-3 hsa-miR-514a-5p mir-514a-3/5p -hsa-mir-514a-3 hsa-miR-514a-3p mir-514a-3/3p -hsa-mir-514a-3 hsa-miR-514 mir-514a-3/514 -hsa-mir-514a-2 hsa-miR-514a-3p mir-514a-2/3p -hsa-mir-514a-2 hsa-miR-514a-5p mir-514a-2/5p -hsa-mir-514a-2 hsa-miR-514 mir-514a-2/514 -hsa-mir-514a-1 hsa-miR-514a-5p mir-514a-1/5p -hsa-mir-514a-1 hsa-miR-514a-3p mir-514a-1/3p -hsa-mir-514a-1 hsa-miR-514 mir-514a-1/514 -hsa-mir-514-3 hsa-miR-514a-3p mir-514-3/3p -hsa-mir-514-3 hsa-miR-514 mir-514-3/514 -hsa-mir-514-2 hsa-miR-514a-5p mir-514-2/5p -hsa-mir-514-2 hsa-miR-514a-3p mir-514-2/3p -hsa-mir-514-2 hsa-miR-514 mir-514-2/514 -hsa-mir-514-1 hsa-miR-514a-5p mir-514-1/5p -hsa-mir-514-1 hsa-miR-514a-3p mir-514-1/3p -hsa-mir-514-1 hsa-miR-514 mir-514-1/514 -hsa-mir-513a-2 hsa-miR-513a-3p mir-513a-2/3p -hsa-mir-513a-2 hsa-miR-513 mir-513a-2/513 -hsa-mir-513a-2 hsa-miR-513a-5p mir-513a-2/5p -hsa-mir-513a-2 hsa-miR-513-5p mir-513a-2/5p -hsa-mir-513a-2 hsa-miR-513-3p mir-513a-2/3p -hsa-mir-513a-1 hsa-miR-513a-5p mir-513a-1/5p -hsa-mir-513a-1 hsa-miR-513 mir-513a-1/513 -hsa-mir-513a-1 hsa-miR-513-5p mir-513a-1/5p -hsa-mir-513a-1 hsa-miR-513a-3p mir-513a-1/3p -hsa-mir-513a-1 hsa-miR-513-3p mir-513a-1/3p -hsa-mir-513-2 hsa-miR-513a-3p mir-513-2/3p -hsa-mir-513-2 hsa-miR-513 mir-513-2/513 -hsa-mir-513-2 hsa-miR-513a-5p mir-513-2/5p -hsa-mir-513-2 hsa-miR-513-5p mir-513-2/5p -hsa-mir-513-2 hsa-miR-513-3p mir-513-2/3p -hsa-mir-513-1 hsa-miR-513a-5p mir-513-1/5p -hsa-mir-513-1 hsa-miR-513 mir-513-1/513 -hsa-mir-513-1 hsa-miR-513-5p mir-513-1/5p -hsa-mir-513-1 hsa-miR-513a-3p mir-513-1/3p -hsa-mir-513-1 hsa-miR-513-3p mir-513-1/3p -hsa-mir-512-2 hsa-miR-512-5p mir-512-2/5p -hsa-mir-512-2 hsa-miR-512-3p mir-512-2/3p -hsa-mir-512-1 hsa-miR-512-5p mir-512-1/5p -hsa-mir-512-1 hsa-miR-512-3p mir-512-1/3p -hsa-mir-511 hsa-miR-511-5p mir-511/5p -hsa-mir-511 hsa-miR-511-3p mir-511/3p -hsa-mir-510 hsa-miR-510-5p mir-510/5p -hsa-mir-510 hsa-miR-510-3p mir-510/3p -hsa-mir-510 hsa-miR-510 mir-510/510 -hsa-mir-509-3 hsa-miR-509-3-5p mir-509-3/5p -hsa-mir-509-3 hsa-miR-509-3p mir-509-3/3p -hsa-mir-509-3 hsa-miR-509 mir-509-3/509 -hsa-mir-509-2 hsa-miR-509-5p mir-509-2/5p -hsa-mir-509-2 hsa-miR-509-3p mir-509-2/3p -hsa-mir-509-2 hsa-miR-509 mir-509-2/509 -hsa-mir-509-1 hsa-miR-509-5p mir-509-1/5p -hsa-mir-509-1 hsa-miR-509-3p mir-509-1/3p -hsa-mir-508 hsa-miR-508-5p mir-508/5p -hsa-mir-508 hsa-miR-508-3p mir-508/3p -hsa-mir-508 hsa-miR-508 mir-508/508 -hsa-mir-506 hsa-miR-506-5p mir-506/5p -hsa-mir-506 hsa-miR-506-3p mir-506/3p -hsa-mir-506 hsa-miR-506 mir-506/506 -hsa-mir-505 hsa-miR-505-5p mir-505/5p -hsa-mir-505 hsa-miR-505-3p mir-505/3p -hsa-mir-505 hsa-miR-505* mir-505/505* -hsa-mir-505 hsa-miR-505 mir-505/505 -hsa-mir-504 hsa-miR-504-5p mir-504/5p -hsa-mir-504 hsa-miR-504-3p mir-504/3p -hsa-mir-504 hsa-miR-504 mir-504/504 -hsa-mir-503 hsa-miR-503-5p mir-503/5p -hsa-mir-503 hsa-miR-503-3p mir-503/3p -hsa-mir-503 hsa-miR-503 mir-503/503 -hsa-mir-502 hsa-miR-502-5p mir-502/5p -hsa-mir-502 hsa-miR-502 mir-502/502 -hsa-mir-502 hsa-miR-502-3p mir-502/3p -hsa-mir-5011 hsa-miR-5011-5p mir-5011/5p -hsa-mir-5011 hsa-miR-5011-3p mir-5011/3p -hsa-mir-5010 hsa-miR-5010-5p mir-5010/5p -hsa-mir-5010 hsa-miR-5010-3p mir-5010/3p -hsa-mir-501 hsa-miR-501-5p mir-501/5p -hsa-mir-501 hsa-miR-501 mir-501/501 -hsa-mir-501 hsa-miR-501-3p mir-501/3p -hsa-mir-500b hsa-miR-500b-5p mir-500b/5p -hsa-mir-500b hsa-miR-500b-3p mir-500b/3p -hsa-mir-500b hsa-miR-500b mir-500b/500b -hsa-mir-500a hsa-miR-500a-5p mir-500a/5p -hsa-mir-500a hsa-miR-500 mir-500a/500 -hsa-mir-500a hsa-miR-500a-3p mir-500a/3p -hsa-mir-500a hsa-miR-500a mir-500a/500a -hsa-mir-500a hsa-miR-500a* mir-500a/500a* -hsa-mir-5009 hsa-miR-5009-5p mir-5009/5p -hsa-mir-5009 hsa-miR-5009-3p mir-5009/3p -hsa-mir-5007 hsa-miR-5007-5p mir-5007/5p -hsa-mir-5007 hsa-miR-5007-3p mir-5007/3p -hsa-mir-5006 hsa-miR-5006-5p mir-5006/5p -hsa-mir-5006 hsa-miR-5006-3p mir-5006/3p -hsa-mir-5004 hsa-miR-5004-5p mir-5004/5p -hsa-mir-5004 hsa-miR-5004-3p mir-5004/3p -hsa-mir-5003 hsa-miR-5003-5p mir-5003/5p -hsa-mir-5003 hsa-miR-5003-3p mir-5003/3p -hsa-mir-5002 hsa-miR-5002-5p mir-5002/5p -hsa-mir-5002 hsa-miR-5002-3p mir-5002/3p -hsa-mir-5001 hsa-miR-5001-5p mir-5001/5p -hsa-mir-5001 hsa-miR-5001-3p mir-5001/3p -hsa-mir-5000 hsa-miR-5000-5p mir-5000/5p -hsa-mir-5000 hsa-miR-5000-3p mir-5000/3p -hsa-mir-500 hsa-miR-500a-5p mir-500/5p -hsa-mir-500 hsa-miR-500 mir-500/500 -hsa-mir-500 hsa-miR-500a mir-500/500a -hsa-mir-500 hsa-miR-500a-3p mir-500/3p -hsa-mir-499b hsa-miR-499b-5p mir-499b/5p -hsa-mir-499b hsa-miR-499b-3p mir-499b/3p -hsa-mir-499b hsa-miR-499a-3p mir-499b/3p -hsa-mir-499a hsa-miR-499 mir-499a/499 -hsa-mir-499a hsa-miR-499-5p mir-499a/5p -hsa-mir-499a hsa-miR-499-3p mir-499a/3p -hsa-mir-499a hsa-miR-499b-5p mir-499a/5p -hsa-mir-7851 hsa-miR-7851-3p mir-7851/3p -hsa-mir-8053 hsa-miR-8053 mir-8053/8053 -hsa-mir-8084 hsa-miR-8084 mir-8084/8084 -hsa-mir-3670-3 hsa-miR-3670 mir-3670-3/3670 -hsa-mir-499a hsa-miR-499b-3p mir-499a/3p -hsa-mir-499a hsa-miR-499a-5p mir-499a/5p -hsa-mir-499a hsa-miR-499a-3p mir-499a/3p -hsa-mir-4999 hsa-miR-4999-5p mir-4999/5p -hsa-mir-4999 hsa-miR-4999-3p mir-4999/3p -hsa-mir-499 hsa-miR-499a-3p mir-499/3p -hsa-mir-499 hsa-miR-499a-5p mir-499/5p -hsa-mir-6724-2 hsa-miR-6724-5p mir-6724-2/5p -hsa-mir-3179-4 hsa-miR-3179 mir-3179-4/3179 -hsa-mir-9500 hsa-miR-9500 mir-9500/9500 -hsa-mir-3648-2 hsa-miR-3648 mir-3648-2/3648 -hsa-mir-941-5 hsa-miR-941 mir-941-5/941 -hsa-mir-499 hsa-miR-499 mir-499/499 -hsa-mir-499 hsa-miR-499-5p mir-499/5p -hsa-mir-6724-4 hsa-miR-6724-5p mir-6724-4/5p -hsa-mir-1244-4 hsa-miR-1244 mir-1244-4/1244 -hsa-mir-499 hsa-miR-499-3p mir-499/3p -hsa-mir-8069-2 hsa-miR-8069 mir-8069-2/8069 -hsa-mir-8485 hsa-miR-8485 mir-8485/8485 -hsa-mir-498 hsa-miR-498-5p mir-498/5p -hsa-mir-498 hsa-miR-498-3p mir-498/3p -hsa-mir-498 hsa-miR-498 mir-498/498 -hsa-mir-6724-3 hsa-miR-6724-5p mir-6724-3/5p -hsa-mir-497 hsa-miR-497-5p mir-497/5p -hsa-mir-497 hsa-miR-497-3p mir-497/3p -hsa-mir-3670-4 hsa-miR-3670 mir-3670-4/3670 -hsa-mir-5701-3 hsa-miR-5701 mir-5701-3/5701 -hsa-mir-12114 hsa-miR-12114 mir-12114/12114 -hsa-mir-9718 hsa-miR-9718 mir-9718/9718 -hsa-mir-9898 hsa-miR-9898 mir-9898/9898 -hsa-mir-497 hsa-miR-497 mir-497/497 -hsa-mir-497 hsa-miR-497* mir-497/497* -hsa-mir-495 hsa-miR-495-5p mir-495/5p -hsa-mir-9900 hsa-miR-9900 mir-9900/9900 -hsa-mir-9902-1 hsa-miR-9902 mir-9902-1/9902 -hsa-mir-9986 hsa-miR-9986 mir-9986/9986 -hsa-mir-495 hsa-miR-495-3p mir-495/3p -hsa-mir-495 hsa-miR-495 mir-495/495 -hsa-mir-494 hsa-miR-494-5p mir-494/5p -hsa-mir-494 hsa-miR-494-3p mir-494/3p -hsa-mir-494 hsa-miR-494 mir-494/494 -hsa-mir-493 hsa-miR-493-5p mir-493/5p -hsa-mir-493 hsa-miR-493-3p mir-493/3p -hsa-mir-493 hsa-miR-493* mir-493/493* -hsa-mir-493 hsa-miR-493 mir-493/493 -hsa-mir-491 hsa-miR-491-5p mir-491/5p -hsa-mir-10522 hsa-miR-10522-5p mir-10522/5p -hsa-mir-10524 hsa-miR-10524-5p mir-10524/5p -hsa-mir-10526 hsa-miR-10526-3p mir-10526/3p -hsa-mir-491 hsa-miR-491 mir-491/491 -hsa-mir-491 hsa-miR-491-3p mir-491/3p -hsa-mir-490 hsa-miR-490-5p mir-490/5p -hsa-mir-490 hsa-miR-490-3p mir-490/3p -hsa-mir-490 hsa-miR-490 mir-490/490 -hsa-mir-9899 hsa-miR-9899 mir-9899/9899 -hsa-mir-9901 hsa-miR-9901 mir-9901/9901 -hsa-mir-9903 hsa-miR-9903 mir-9903/9903 -hsa-mir-9985 hsa-miR-9985 mir-9985/9985 -hsa-mir-6133 hsa-miR-6133 mir-6133/6133 -hsa-mir-489 hsa-miR-489-5p mir-489/5p -hsa-mir-489 hsa-miR-489-3p mir-489/3p -hsa-mir-489 hsa-miR-489 mir-489/489 -hsa-mir-488 hsa-miR-488-5p mir-488/5p -hsa-mir-488 hsa-miR-488-3p mir-488/3p -hsa-mir-488 hsa-miR-488* mir-488/488* -hsa-mir-488 hsa-miR-488 mir-488/488 -hsa-mir-487b hsa-miR-487b-5p mir-487b/5p -hsa-mir-487b hsa-miR-487b-3p mir-487b/3p -hsa-mir-10525 hsa-miR-10525-3p mir-10525/3p -hsa-mir-10527 hsa-miR-10527-5p mir-10527/5p -hsa-mir-11399 hsa-miR-11399 mir-11399/11399 -hsa-mir-12113 hsa-miR-12113 mir-12113/12113 -hsa-mir-487b hsa-miR-487b mir-487b/487b -hsa-mir-487a hsa-miR-487a-3p mir-487a/3p -hsa-mir-11401 hsa-miR-11401 mir-11401/11401 -hsa-mir-10523 hsa-miR-10523-5p mir-10523/5p -hsa-mir-9902-2 hsa-miR-9902 mir-9902-2/9902 -hsa-mir-487a hsa-miR-487a-5p mir-487a/5p -hsa-mir-487a hsa-miR-487 mir-487a/487 -hsa-mir-12115 hsa-miR-12115 mir-12115/12115 -hsa-mir-12116 hsa-miR-12116 mir-12116/12116 -hsa-mir-12117 hsa-miR-12117 mir-12117/12117 -hsa-mir-12119 hsa-miR-12119 mir-12119/12119 -hsa-mir-12121 hsa-miR-12121 mir-12121/12121 -hsa-mir-12122 hsa-miR-12122 mir-12122/12122 -hsa-mir-12123 hsa-miR-12123 mir-12123/12123 -hsa-mir-12124 hsa-miR-12124 mir-12124/12124 -hsa-mir-487a hsa-miR-487a mir-487a/487a -hsa-mir-487 hsa-miR-487 mir-487/487 -hsa-mir-487 hsa-miR-487a-3p mir-487/3p -hsa-mir-487 hsa-miR-487a-5p mir-487/5p -hsa-mir-486-2 hsa-miR-486-5p mir-486-2/5p -hsa-mir-486-2 hsa-miR-486 mir-486-2/486 -hsa-mir-486-2 hsa-miR-486-3p mir-486-2/3p -hsa-mir-12125 hsa-miR-12125 mir-12125/12125 -hsa-mir-486-1 hsa-miR-486-5p mir-486-1/5p -hsa-mir-486-1 hsa-miR-486 mir-486-1/486 -hsa-mir-486-1 hsa-miR-486-3p mir-486-1/3p -hsa-mir-486 hsa-miR-486-5p mir-486/5p -hsa-mir-486 hsa-miR-486 mir-486/486 -hsa-mir-12126 hsa-miR-12126 mir-12126/12126 -hsa-mir-486 hsa-miR-486-3p mir-486/3p -hsa-mir-485 hsa-miR-485-5p mir-485/5p -hsa-mir-12129 hsa-miR-12129 mir-12129/12129 -hsa-mir-12131 hsa-miR-12131 mir-12131/12131 -hsa-mir-485 hsa-miR-485-3p mir-485/3p -hsa-mir-483 hsa-miR-483-5p mir-483/5p -hsa-mir-483 hsa-miR-483-3p mir-483/3p -hsa-mir-483 hsa-miR-483 mir-483/483 -hsa-mir-12135 hsa-miR-12135 mir-12135/12135 -hsa-mir-4804 hsa-miR-4804-5p mir-4804/5p -hsa-mir-12128 hsa-miR-12128 mir-12128/12128 -hsa-mir-4804 hsa-miR-4804-3p mir-4804/3p -hsa-mir-12130 hsa-miR-12130 mir-12130/12130 -hsa-mir-4802 hsa-miR-4802-5p mir-4802/5p -hsa-mir-12132 hsa-miR-12132 mir-12132/12132 -hsa-mir-4802 hsa-miR-4802-3p mir-4802/3p -hsa-mir-12133 hsa-miR-12133 mir-12133/12133 -hsa-mir-4800 hsa-miR-4800-5p mir-4800/5p -hsa-mir-4800 hsa-miR-4800-3p mir-4800/3p -hsa-mir-12136 hsa-miR-12136 mir-12136/12136 -hsa-mir-4799 hsa-miR-4799-5p mir-4799/5p -hsa-mir-4799 hsa-miR-4799-3p mir-4799/3p -hsa-mir-4798 hsa-miR-4798-5p mir-4798/5p -hsa-mir-4798 hsa-miR-4798-3p mir-4798/3p -hsa-mir-4797 hsa-miR-4797-5p mir-4797/5p -hsa-mir-4797 hsa-miR-4797-3p mir-4797/3p -hsa-mir-12120 hsa-miR-12120 mir-12120/12120 -hsa-mir-12118 hsa-miR-12118 mir-12118/12118 -hsa-mir-4796 hsa-miR-4796-5p mir-4796/5p -hsa-mir-4796 hsa-miR-4796-3p mir-4796/3p -hsa-mir-4795 hsa-miR-4795-5p mir-4795/5p -hsa-mir-4795 hsa-miR-4795-3p mir-4795/3p -hsa-mir-12127 hsa-miR-12127 mir-12127/12127 -hsa-mir-4793 hsa-miR-4793-5p mir-4793/5p -hsa-mir-4793 hsa-miR-4793-3p mir-4793/3p -hsa-mir-4790 hsa-miR-4790-5p mir-4790/5p -hsa-mir-4790 hsa-miR-4790-3p mir-4790/3p -hsa-mir-4789 hsa-miR-4789-5p mir-4789/5p -hsa-mir-4789 hsa-miR-4789-3p mir-4789/3p -hsa-mir-4787 hsa-miR-4787-5p mir-4787/5p -hsa-mir-4787 hsa-miR-4787-3p mir-4787/3p -hsa-mir-4786 hsa-miR-4786-5p mir-4786/5p -hsa-mir-4786 hsa-miR-4786-3p mir-4786/3p -hsa-mir-4783 hsa-miR-4783-5p mir-4783/5p -hsa-mir-4783 hsa-miR-4783-3p mir-4783/3p -hsa-mir-4782 hsa-miR-4782-5p mir-4782/5p -hsa-mir-4782 hsa-miR-4782-3p mir-4782/3p -hsa-mir-4781 hsa-miR-4781-5p mir-4781/5p -hsa-mir-4781 hsa-miR-4781-3p mir-4781/3p -hsa-mir-4778 hsa-miR-4778-5p mir-4778/5p -hsa-mir-4778 hsa-miR-4778-3p mir-4778/3p -hsa-mir-4777 hsa-miR-4777-5p mir-4777/5p -hsa-mir-4777 hsa-miR-4777-3p mir-4777/3p -hsa-mir-4776-2 hsa-miR-4776-5p mir-4776-2/5p -hsa-mir-4776-2 hsa-miR-4776-3p mir-4776-2/3p -hsa-mir-6745 hsa-miR-6745 mir-6745/6745 -hsa-mir-4776-1 hsa-miR-4776-5p mir-4776-1/5p -hsa-mir-4776-1 hsa-miR-4776-3p mir-4776-1/3p -hsa-mir-4774 hsa-miR-4774-5p mir-4774/5p -hsa-mir-4774 hsa-miR-4774-3p mir-4774/3p -hsa-mir-4772 hsa-miR-4772-5p mir-4772/5p -hsa-mir-4772 hsa-miR-4772-3p mir-4772/3p -hsa-mir-4769 hsa-miR-4769-5p mir-4769/5p -hsa-mir-4769 hsa-miR-4769-3p mir-4769/3p -hsa-mir-4768 hsa-miR-4768-5p mir-4768/5p -hsa-mir-4768 hsa-miR-4768-3p mir-4768/3p -hsa-mir-4766 hsa-miR-4766-5p mir-4766/5p -hsa-mir-4766 hsa-miR-4766-3p mir-4766/3p -hsa-mir-4764 hsa-miR-4764-5p mir-4764/5p -hsa-mir-4764 hsa-miR-4764-3p mir-4764/3p -hsa-mir-4763 hsa-miR-4763-5p mir-4763/5p -hsa-mir-4763 hsa-miR-4763-3p mir-4763/3p -hsa-mir-4762 hsa-miR-4762-5p mir-4762/5p -hsa-mir-4762 hsa-miR-4762-3p mir-4762/3p -hsa-mir-4761 hsa-miR-4761-5p mir-4761/5p -hsa-mir-4761 hsa-miR-4761-3p mir-4761/3p -hsa-mir-4760 hsa-miR-4760-5p mir-4760/5p -hsa-mir-4760 hsa-miR-4760-3p mir-4760/3p -hsa-mir-4758 hsa-miR-4758-5p mir-4758/5p -hsa-mir-4758 hsa-miR-4758-3p mir-4758/3p -hsa-mir-4757 hsa-miR-4757-5p mir-4757/5p -hsa-mir-4757 hsa-miR-4757-3p mir-4757/3p -hsa-mir-4756 hsa-miR-4756-5p mir-4756/5p -hsa-mir-4756 hsa-miR-4756-3p mir-4756/3p -hsa-mir-4755 hsa-miR-4755-5p mir-4755/5p -hsa-mir-4755 hsa-miR-4755-3p mir-4755/3p -hsa-mir-4753 hsa-miR-4753-5p mir-4753/5p -hsa-mir-4753 hsa-miR-4753-3p mir-4753/3p -hsa-mir-4750 hsa-miR-4750-5p mir-4750/5p -hsa-mir-4750 hsa-miR-4750-3p mir-4750/3p -hsa-mir-4750 hsa-miR-4750 mir-4750/4750 -hsa-mir-4749 hsa-miR-4749-5p mir-4749/5p -hsa-mir-4749 hsa-miR-4749-3p mir-4749/3p -hsa-mir-4747 hsa-miR-4747-5p mir-4747/5p -hsa-mir-4747 hsa-miR-4747-3p mir-4747/3p -hsa-mir-4746 hsa-miR-4746-5p mir-4746/5p -hsa-mir-4746 hsa-miR-4746-3p mir-4746/3p -hsa-mir-4745 hsa-miR-4745-5p mir-4745/5p -hsa-mir-4745 hsa-miR-4745-3p mir-4745/3p -hsa-mir-4743 hsa-miR-4743-5p mir-4743/5p -hsa-mir-4743 hsa-miR-4743-3p mir-4743/3p -hsa-mir-4743 hsa-miR-4743 mir-4743/4743 -hsa-mir-4742 hsa-miR-4742-5p mir-4742/5p -hsa-mir-4742 hsa-miR-4742-3p mir-4742/3p -hsa-mir-4740 hsa-miR-4740-5p mir-4740/5p -hsa-mir-4740 hsa-miR-4740-3p mir-4740/3p -hsa-mir-4738 hsa-miR-4738-5p mir-4738/5p -hsa-mir-4738 hsa-miR-4738-3p mir-4738/3p -hsa-mir-4735 hsa-miR-4735-5p mir-4735/5p -hsa-mir-4735 hsa-miR-4735-3p mir-4735/3p -hsa-mir-4733 hsa-miR-4733-5p mir-4733/5p -hsa-mir-4733 hsa-miR-4733-3p mir-4733/3p -hsa-mir-4732 hsa-miR-4732-5p mir-4732/5p -hsa-mir-4732 hsa-miR-4732-3p mir-4732/3p -hsa-mir-4731 hsa-miR-4731-5p mir-4731/5p -hsa-mir-4731 hsa-miR-4731-3p mir-4731/3p -hsa-mir-4728 hsa-miR-4728-5p mir-4728/5p -hsa-mir-4728 hsa-miR-4728-3p mir-4728/3p -hsa-mir-4727 hsa-miR-4727-5p mir-4727/5p -hsa-mir-4727 hsa-miR-4727-3p mir-4727/3p -hsa-mir-4726 hsa-miR-4726-5p mir-4726/5p -hsa-mir-4726 hsa-miR-4726-3p mir-4726/3p -hsa-mir-4725 hsa-miR-4725-5p mir-4725/5p -hsa-mir-4725 hsa-miR-4725-3p mir-4725/3p -hsa-mir-4724 hsa-miR-4724-5p mir-4724/5p -hsa-mir-4724 hsa-miR-4724-3p mir-4724/3p -hsa-mir-4723 hsa-miR-4723-5p mir-4723/5p -hsa-mir-4723 hsa-miR-4723-3p mir-4723/3p -hsa-mir-4722 hsa-miR-4722-5p mir-4722/5p -hsa-mir-4722 hsa-miR-4722-3p mir-4722/3p -hsa-mir-107-10 hsa-miR-107 mir-107-10/107 -hsa-mir-4720 hsa-miR-4720-5p mir-4720/5p -hsa-mir-4720 hsa-miR-4720-3p mir-4720/3p -hsa-mir-4717 hsa-miR-4717-5p mir-4717/5p -hsa-mir-4717 hsa-miR-4717-3p mir-4717/3p -hsa-mir-4716 hsa-miR-4716-5p mir-4716/5p -hsa-mir-4716 hsa-miR-4716-3p mir-4716/3p -hsa-mir-4715 hsa-miR-4715-5p mir-4715/5p -hsa-mir-4715 hsa-miR-4715-3p mir-4715/3p -hsa-mir-4714 hsa-miR-4714-5p mir-4714/5p -hsa-mir-4714 hsa-miR-4714-3p mir-4714/3p -hsa-mir-4713 hsa-miR-4713-5p mir-4713/5p -hsa-mir-4713 hsa-miR-4713-3p mir-4713/3p -hsa-mir-4712 hsa-miR-4712-5p mir-4712/5p -hsa-mir-4712 hsa-miR-4712-3p mir-4712/3p -hsa-mir-4711 hsa-miR-4711-5p mir-4711/5p -hsa-mir-4711 hsa-miR-4711-3p mir-4711/3p -hsa-mir-4709 hsa-miR-4709-5p mir-4709/5p -hsa-mir-4709 hsa-miR-4709-3p mir-4709/3p -hsa-mir-4708 hsa-miR-4708-5p mir-4708/5p -hsa-mir-4708 hsa-miR-4708-3p mir-4708/3p -hsa-mir-4707 hsa-miR-4707-5p mir-4707/5p -hsa-mir-4707 hsa-miR-4707-3p mir-4707/3p -hsa-mir-4704 hsa-miR-4704-5p mir-4704/5p -hsa-mir-4704 hsa-miR-4704-3p mir-4704/3p -hsa-mir-4703 hsa-miR-4703-5p mir-4703/5p -hsa-mir-4703 hsa-miR-4703-3p mir-4703/3p -hsa-mir-4701 hsa-miR-4701-5p mir-4701/5p -hsa-mir-4701 hsa-miR-4701-3p mir-4701/3p -hsa-mir-4700 hsa-miR-4700-5p mir-4700/5p -hsa-mir-4700 hsa-miR-4700-3p mir-4700/3p -hsa-mir-4699 hsa-miR-4699-5p mir-4699/5p -hsa-mir-4699 hsa-miR-4699-3p mir-4699/3p -hsa-mir-4697 hsa-miR-4697-5p mir-4697/5p -hsa-mir-4697 hsa-miR-4697-3p mir-4697/3p -hsa-mir-4695 hsa-miR-4695-5p mir-4695/5p -hsa-mir-4695 hsa-miR-4695-3p mir-4695/3p -hsa-mir-4694 hsa-miR-4694-5p mir-4694/5p -hsa-mir-4694 hsa-miR-4694-3p mir-4694/3p -hsa-mir-4693 hsa-miR-4693-5p mir-4693/5p -hsa-mir-4693 hsa-miR-4693-3p mir-4693/3p -hsa-mir-4691 hsa-miR-4691-5p mir-4691/5p -hsa-mir-4691 hsa-miR-4691-3p mir-4691/3p -hsa-mir-4690 hsa-miR-4690-5p mir-4690/5p -hsa-mir-4690 hsa-miR-4690-3p mir-4690/3p -hsa-mir-4687 hsa-miR-4687-5p mir-4687/5p -hsa-mir-4687 hsa-miR-4687-3p mir-4687/3p -hsa-mir-663a hsa-miR-663a mir-663a/663a -hsa-mir-4685 hsa-miR-4685-5p mir-4685/5p -hsa-mir-4685 hsa-miR-4685-3p mir-4685/3p -hsa-mir-4684 hsa-miR-4684-5p mir-4684/5p -hsa-mir-4684 hsa-miR-4684-3p mir-4684/3p -hsa-mir-4680 hsa-miR-4680-5p mir-4680/5p -hsa-mir-4680 hsa-miR-4680-3p mir-4680/3p -hsa-mir-4677 hsa-miR-4677-5p mir-4677/5p -hsa-mir-4677 hsa-miR-4677-3p mir-4677/3p -hsa-mir-4676 hsa-miR-4676-5p mir-4676/5p -hsa-mir-4676 hsa-miR-4676-3p mir-4676/3p -hsa-mir-4671 hsa-miR-4671-5p mir-4671/5p -hsa-mir-4671 hsa-miR-4671-3p mir-4671/3p -hsa-mir-4670 hsa-miR-4670-5p mir-4670/5p -hsa-mir-4670 hsa-miR-4670-3p mir-4670/3p -hsa-mir-4668 hsa-miR-4668-5p mir-4668/5p -hsa-mir-4668 hsa-miR-4668-3p mir-4668/3p -hsa-mir-4667 hsa-miR-4667-5p mir-4667/5p -hsa-mir-4667 hsa-miR-4667-3p mir-4667/3p -hsa-mir-4666a hsa-miR-4666a-5p mir-4666a/5p -hsa-mir-3690-1 hsa-miR-3690 mir-3690-1/3690 -hsa-mir-4666a hsa-miR-4666-5p mir-4666a/5p -hsa-mir-4666a hsa-miR-4666a-3p mir-4666a/3p -hsa-mir-4666a hsa-miR-4666-3p mir-4666a/3p -hsa-mir-4666 hsa-miR-4666a-5p mir-4666/5p -hsa-mir-4666 hsa-miR-4666-5p mir-4666/5p -hsa-mir-4666 hsa-miR-4666a-3p mir-4666/3p -hsa-mir-4666 hsa-miR-4666-3p mir-4666/3p -hsa-mir-4665 hsa-miR-4665-5p mir-4665/5p -hsa-mir-4665 hsa-miR-4665-3p mir-4665/3p -hsa-mir-4664 hsa-miR-4664-5p mir-4664/5p -hsa-mir-4664 hsa-miR-4664-3p mir-4664/3p -hsa-mir-4662a hsa-miR-4662a-5p mir-4662a/5p -hsa-mir-4662a hsa-miR-4662a-3p mir-4662a/3p -hsa-mir-4661 hsa-miR-4661-5p mir-4661/5p -hsa-mir-4661 hsa-miR-4661-3p mir-4661/3p -hsa-mir-7704 hsa-miR-7704 mir-7704/7704 -hsa-mir-4659b hsa-miR-4659b-5p mir-4659b/5p -hsa-mir-4659b hsa-miR-4659b-3p mir-4659b/3p -hsa-mir-4659a hsa-miR-4659a-5p mir-4659a/5p -hsa-mir-7853 hsa-miR-7853-5p mir-7853/5p -hsa-mir-4659a hsa-miR-4659a-3p mir-4659a/3p -hsa-mir-4655 hsa-miR-4655-5p mir-4655/5p -hsa-mir-4655 hsa-miR-4655-3p mir-4655/3p -hsa-mir-4653 hsa-miR-4653-5p mir-4653/5p -hsa-mir-4653 hsa-miR-4653-3p mir-4653/3p -hsa-mir-4652 hsa-miR-4652-5p mir-4652/5p -hsa-mir-4652 hsa-miR-4652-3p mir-4652/3p -hsa-mir-4652 hsa-miR-4652-5p mir-4652/5p -hsa-mir-4652 hsa-miR-4652-3p mir-4652/3p -hsa-mir-4650-2 hsa-miR-4650-5p mir-4650-2/5p -hsa-mir-4650-2 hsa-miR-4650-3p mir-4650-2/3p -hsa-mir-7975 hsa-miR-7975 mir-7975/7975 -hsa-mir-4650-1 hsa-miR-4650-5p mir-4650-1/5p -hsa-mir-4650-1 hsa-miR-4650-3p mir-4650-1/3p -hsa-mir-4649 hsa-miR-4649-5p mir-4649/5p -hsa-mir-4649 hsa-miR-4649-3p mir-4649/3p -hsa-mir-4646 hsa-miR-4646-5p mir-4646/5p -hsa-mir-4646 hsa-miR-4646-3p mir-4646/3p -hsa-mir-4645 hsa-miR-4645-5p mir-4645/5p -hsa-mir-4645 hsa-miR-4645-3p mir-4645/3p -hsa-mir-4641 hsa-miR-323b-5p mir-4641/5p -hsa-mir-4641 hsa-miR-453 mir-4641/453 -hsa-mir-4641 hsa-miR-4641 mir-4641/4641 -hsa-mir-8052 hsa-miR-8052 mir-8052/8052 -hsa-mir-4640 hsa-miR-4640-5p mir-4640/5p -hsa-mir-4640 hsa-miR-4640-3p mir-4640/3p -hsa-mir-4639 hsa-miR-4639-5p mir-4639/5p -hsa-mir-8057 hsa-miR-8057 mir-8057/8057 -hsa-mir-4639 hsa-miR-4639-3p mir-4639/3p -hsa-mir-4638 hsa-miR-4638-5p mir-4638/5p -hsa-mir-4638 hsa-miR-4638-3p mir-4638/3p -hsa-mir-4633 hsa-miR-4633-5p mir-4633/5p -hsa-mir-8063 hsa-miR-8063 mir-8063/8063 -hsa-mir-4633 hsa-miR-4633-3p mir-4633/3p -hsa-mir-4632 hsa-miR-4632-5p mir-4632/5p -hsa-mir-4632 hsa-miR-4632-3p mir-4632/3p -hsa-mir-4632 hsa-miR-4632 mir-4632/4632 -hsa-mir-455 hsa-miR-455 mir-455/455 -hsa-mir-455 hsa-miR-455-5p mir-455/5p -hsa-mir-8068 hsa-miR-8068 mir-8068/8068 -hsa-mir-455 hsa-miR-455-3p mir-455/3p -hsa-mir-454 hsa-miR-454* mir-454/454* -hsa-mir-454 hsa-miR-454 mir-454/454 -hsa-mir-4536-1 hsa-miR-4536-5p mir-4536-1/5p -hsa-mir-4536-1 hsa-miR-4536 mir-4536-1/4536 -hsa-mir-4536-1 hsa-miR-4536-3p mir-4536-1/3p -hsa-mir-4536 hsa-miR-4536-5p mir-4536/5p -hsa-mir-4536 hsa-miR-4536-3p mir-4536/3p -hsa-mir-4536 hsa-miR-4536 mir-4536/4536 -hsa-mir-4529 hsa-miR-4529-5p mir-4529/5p -hsa-mir-8072 hsa-miR-8072 mir-8072/8072 -hsa-mir-4529 hsa-miR-4529-3p mir-4529/3p -hsa-mir-4524b hsa-miR-4524b-5p mir-4524b/5p -hsa-mir-4524b hsa-miR-4524b-3p mir-4524b/3p -hsa-mir-4524a hsa-miR-4524a-5p mir-4524a/5p -hsa-mir-4524a hsa-miR-4524 mir-4524a/4524 -hsa-mir-4524a hsa-miR-4524a-3p mir-4524a/3p -hsa-mir-4524 hsa-miR-4524a-5p mir-4524/5p -hsa-mir-4524 hsa-miR-4524a-3p mir-4524/3p -hsa-mir-4524 hsa-miR-4524 mir-4524/4524 -hsa-mir-4524 hsa-miR-4524* mir-4524/4524* -hsa-mir-4520b hsa-miR-4520-5p mir-4520b/5p -hsa-mir-4520b hsa-miR-4520a-5p mir-4520b/5p -hsa-mir-4520b hsa-miR-4520-2-3p mir-4520b/3p -hsa-mir-8078 hsa-miR-8078 mir-8078/8078 -hsa-mir-4520b hsa-miR-4520b-5p mir-4520b/5p -hsa-mir-4520b hsa-miR-4520b-3p mir-4520b/3p -hsa-mir-4520a hsa-miR-4520-5p mir-4520a/5p -hsa-mir-4520a hsa-miR-4520a-5p mir-4520a/5p -hsa-mir-4520a hsa-miR-4520-3p mir-4520a/3p -hsa-mir-4520a hsa-miR-4520a-3p mir-4520a/3p -hsa-mir-8083 hsa-miR-8083 mir-8083/8083 -hsa-mir-4520-2 hsa-miR-4520-5p mir-4520-2/5p -hsa-mir-4520-2 hsa-miR-4520a-5p mir-4520-2/5p -hsa-mir-4520-2 hsa-miR-4520-2-3p mir-4520-2/3p -hsa-mir-4520-2 hsa-miR-4520b-3p mir-4520-2/3p -hsa-mir-4520-1 hsa-miR-4520-5p mir-4520-1/5p -hsa-mir-4520-1 hsa-miR-4520a-5p mir-4520-1/5p -hsa-mir-4520-1 hsa-miR-4520-3p mir-4520-1/3p -hsa-mir-4520-1 hsa-miR-4520a-3p mir-4520-1/3p -hsa-mir-452 hsa-miR-452-5p mir-452/5p -hsa-mir-452 hsa-miR-452-3p mir-452/3p -hsa-mir-8088 hsa-miR-8088 mir-8088/8088 -hsa-mir-452 hsa-miR-452 mir-452/452 -hsa-mir-452 hsa-miR-452* mir-452/452* -hsa-mir-451a hsa-miR-451a mir-451a/451a -hsa-mir-451a hsa-miR-451 mir-451a/451 -hsa-mir-451 hsa-miR-451a mir-451/451a -hsa-mir-451 hsa-miR-451 mir-451/451 -hsa-mir-450b hsa-miR-450b-5p mir-450b/5p -hsa-mir-450b hsa-miR-450b-3p mir-450b/3p -hsa-mir-8071-2 hsa-miR-8071 mir-8071-2/8071 -hsa-mir-450a-2 hsa-miR-450a-5p mir-450a-2/5p -hsa-mir-450a-2 hsa-miR-450 mir-450a-2/450 -hsa-mir-450a-2 hsa-miR-450a-2-3p mir-450a-2/3p -hsa-mir-8064 hsa-miR-8064 mir-8064/8064 -hsa-mir-6124 hsa-miR-6124 mir-6124/6124 -hsa-mir-7973-2 hsa-miR-7973 mir-7973-2/7973 -hsa-mir-450a-2 hsa-miR-450a mir-450a-2/450a -hsa-mir-450a-1 hsa-miR-450a-5p mir-450a-1/5p -hsa-mir-450a-1 hsa-miR-450 mir-450a-1/450 -hsa-mir-450a-1 hsa-miR-450a-1-3p mir-450a-1/3p -hsa-mir-450a-1 hsa-miR-450a mir-450a-1/450a -hsa-mir-450-2 hsa-miR-450a-5p mir-450-2/5p -hsa-mir-6717 hsa-miR-6717-5p mir-6717/5p -hsa-mir-450-2 hsa-miR-450 mir-450-2/450 -hsa-mir-450-2 hsa-miR-450a mir-450-2/450a -hsa-mir-450-2 hsa-miR-450a-2-3p mir-450-2/3p -hsa-mir-450-1 hsa-miR-450a-5p mir-450-1/5p -hsa-mir-8059 hsa-miR-8059 mir-8059/8059 -hsa-mir-6718 hsa-miR-6718-5p mir-6718/5p -hsa-mir-6082 hsa-miR-6082 mir-6082/6082 -hsa-mir-450-1 hsa-miR-450 mir-450-1/450 -hsa-mir-450-1 hsa-miR-450a mir-450-1/450a -hsa-mir-450-1 hsa-miR-450a-1-3p mir-450-1/3p -hsa-mir-450 hsa-miR-450a-5p mir-450/5p -hsa-mir-450 hsa-miR-450 mir-450/450 -hsa-mir-450 hsa-miR-450a mir-450/450a -hsa-mir-450 hsa-miR-450a-1-3p mir-450/3p -hsa-mir-449c hsa-miR-449c mir-449c/449c -hsa-mir-449c hsa-miR-449c* mir-449c/449c* -hsa-mir-449b hsa-miR-449b-5p mir-449b/5p -hsa-mir-449b hsa-miR-449b-3p mir-449b/3p -hsa-mir-449b hsa-miR-449b mir-449b/449b -hsa-mir-449b hsa-miR-449b* mir-449b/449b* -hsa-mir-6130 hsa-miR-6130 mir-6130/6130 -hsa-mir-449a hsa-miR-449 mir-449a/449 -hsa-mir-449a hsa-miR-449a mir-449a/449a -hsa-mir-449 hsa-miR-449a mir-449/449a -hsa-mir-449 hsa-miR-449 mir-449/449 -hsa-mir-8055 hsa-miR-8055 mir-8055/8055 -hsa-mir-6724-1 hsa-miR-6724-5p mir-6724-1/5p -hsa-mir-6724 hsa-miR-6724-5p mir-6724/5p -hsa-mir-4485 hsa-miR-4485-5p mir-4485/5p -hsa-mir-4485 hsa-miR-4485-3p mir-4485/3p -hsa-mir-4485 hsa-miR-4485 mir-4485/4485 -hsa-mir-4482-1 hsa-miR-4482-5p mir-4482-1/5p -hsa-mir-4482-1 hsa-miR-4482-3p mir-4482-1/3p -hsa-mir-4474 hsa-miR-4474-5p mir-4474/5p -hsa-mir-4474 hsa-miR-4474-3p mir-4474/3p -hsa-mir-4446 hsa-miR-4446-5p mir-4446/5p -hsa-mir-4446 hsa-miR-4446-3p mir-4446/3p -hsa-mir-4445 hsa-miR-4445-5p mir-4445/5p -hsa-mir-4445 hsa-miR-4445-3p mir-4445/3p -hsa-mir-4445 hsa-miR-4445 mir-4445/4445 -hsa-mir-4445 hsa-miR-4445* mir-4445/4445* -hsa-mir-4436b-2 hsa-miR-4436b-5p mir-4436b-2/5p -hsa-mir-4436b-2 hsa-miR-4436b-3p mir-4436b-2/3p -hsa-mir-4436b-1 hsa-miR-4436b-3p mir-4436b-1/3p -hsa-mir-4436b-1 hsa-miR-4436b-5p mir-4436b-1/5p -hsa-mir-4436b hsa-miR-4436b-3p mir-4436b/3p -hsa-mir-4436b hsa-miR-4436b-5p mir-4436b/5p -hsa-mir-4433b hsa-miR-4433b-5p mir-4433b/5p -hsa-mir-4433b hsa-miR-4433b-3p mir-4433b/3p -hsa-mir-4433a hsa-miR-4433a-5p mir-4433a/5p -hsa-mir-4433a hsa-miR-4433-5p mir-4433a/5p -hsa-mir-4433a hsa-miR-4433a-3p mir-4433a/3p -hsa-mir-4433a hsa-miR-4433-3p mir-4433a/3p -hsa-mir-4433 hsa-miR-4433a-5p mir-4433/5p -hsa-mir-4433 hsa-miR-4433-5p mir-4433/5p -hsa-mir-4433 hsa-miR-4433a-3p mir-4433/3p -hsa-mir-4433 hsa-miR-4433-3p mir-4433/3p -hsa-mir-4433 hsa-miR-4433 mir-4433/4433 -hsa-mir-4423 hsa-miR-4423-5p mir-4423/5p -hsa-mir-4423 hsa-miR-4423-3p mir-4423/3p -hsa-mir-433 hsa-miR-433-5p mir-433/5p -hsa-mir-433 hsa-miR-433-3p mir-433/3p -hsa-mir-433 hsa-miR-433 mir-433/433 -hsa-mir-432 hsa-miR-432-5p mir-432/5p -hsa-mir-432 hsa-miR-432-3p mir-432/3p -hsa-mir-432 hsa-miR-432 mir-432/432 -hsa-mir-432 hsa-miR-432* mir-432/432* -hsa-mir-431 hsa-miR-431-5p mir-431/5p -hsa-mir-431 hsa-miR-431-3p mir-431/3p -hsa-mir-431 hsa-miR-431 mir-431/431 -hsa-mir-431 hsa-miR-431* mir-431/431* -hsa-mir-425 hsa-miR-425 mir-425/425 -hsa-mir-425 hsa-miR-425* mir-425/425* -hsa-mir-424 hsa-miR-424-5p mir-424/5p -hsa-mir-424 hsa-miR-424-3p mir-424/3p -hsa-mir-424 hsa-miR-424 mir-424/424 -hsa-mir-424 hsa-miR-424* mir-424/424* -hsa-mir-423 hsa-miR-423-5p mir-423/5p -hsa-mir-423 hsa-miR-423-3p mir-423/3p -hsa-mir-423 hsa-miR-423 mir-423/423 -hsa-mir-412 hsa-miR-412-5p mir-412/5p -hsa-mir-412 hsa-miR-412-3p mir-412/3p -hsa-mir-412 hsa-miR-412 mir-412/412 -hsa-mir-411 hsa-miR-411-5p mir-411/5p -hsa-mir-411 hsa-miR-411-3p mir-411/3p -hsa-mir-411 hsa-miR-411 mir-411/411 -hsa-mir-411 hsa-miR-411* mir-411/411* -hsa-mir-410 hsa-miR-410-5p mir-410/5p -hsa-mir-4444-1 hsa-miR-4444 mir-4444-1/4444 -hsa-mir-410 hsa-miR-410-3p mir-410/3p -hsa-mir-410 hsa-miR-410 mir-410/410 -hsa-mir-409 hsa-miR-409-5p mir-409/5p -hsa-mir-409 hsa-miR-409-3p mir-409/3p -hsa-mir-3944 hsa-miR-3944-5p mir-3944/5p -hsa-mir-3944 hsa-miR-3944-3p mir-3944/3p -hsa-mir-3944 hsa-miR-3944 mir-3944/3944 -hsa-mir-3942 hsa-miR-3942-5p mir-3942/5p -hsa-mir-3942 hsa-miR-3942 mir-3942/3942 -hsa-mir-3942 hsa-miR-3942-3p mir-3942/3p -hsa-mir-3940 hsa-miR-3940 mir-3940/3940 -hsa-mir-3940 hsa-miR-3940-3p mir-3940/3p -hsa-mir-3940 hsa-miR-3940-5p mir-3940/5p -hsa-mir-3934 hsa-miR-3934-5p mir-3934/5p -hsa-mir-3934 hsa-miR-3934-3p mir-3934/3p -hsa-mir-3934 hsa-miR-3934 mir-3934/3934 -hsa-mir-3928 hsa-miR-3928-5p mir-3928/5p -hsa-mir-3928 hsa-miR-3928-3p mir-3928/3p -hsa-mir-3928 hsa-miR-3928 mir-3928/3928 -hsa-mir-3927 hsa-miR-3927-5p mir-3927/5p -hsa-mir-3927 hsa-miR-3927-3p mir-3927/3p -hsa-mir-3927 hsa-miR-3927 mir-3927/3927 -hsa-mir-3925 hsa-miR-3925-5p mir-3925/5p -hsa-mir-3925 hsa-miR-3925 mir-3925/3925 -hsa-mir-3198 hsa-miR-3198 mir-3198/3198 -hsa-mir-3925 hsa-miR-3925-3p mir-3925/3p -hsa-mir-3922 hsa-miR-3922-5p mir-3922/5p -hsa-mir-3922 hsa-miR-3922-3p mir-3922/3p -hsa-mir-3922 hsa-miR-3922 mir-3922/3922 -hsa-mir-3913-2 hsa-miR-3913-5p mir-3913-2/5p -hsa-mir-3913-2 hsa-miR-3913 mir-3913-2/3913 -hsa-mir-3913-1 hsa-miR-3913-5p mir-3913-1/5p -hsa-mir-3913-1 hsa-miR-3913 mir-3913-1/3913 -hsa-mir-3913-1 hsa-miR-3913-3p mir-3913-1/3p -hsa-mir-3912 hsa-miR-3912-5p mir-3912/5p -hsa-mir-3912 hsa-miR-3912-3p mir-3912/3p -hsa-mir-3912 hsa-miR-3912 mir-3912/3912 -hsa-mir-383 hsa-miR-383-5p mir-383/5p -hsa-mir-383 hsa-miR-383-3p mir-383/3p -hsa-mir-383 hsa-miR-383 mir-383/383 -hsa-mir-382 hsa-miR-382-5p mir-382/5p -hsa-mir-382 hsa-miR-382-3p mir-382/3p -hsa-mir-382 hsa-miR-382 mir-382/382 -hsa-mir-381 hsa-miR-381-5p mir-381/5p -hsa-mir-381 hsa-miR-381-3p mir-381/3p -hsa-mir-381 hsa-miR-381 mir-381/381 -hsa-mir-380 hsa-miR-380* mir-380/380* -hsa-mir-380 hsa-miR-380 mir-380/380 -hsa-mir-379 hsa-miR-379-5p mir-379/5p -hsa-mir-379 hsa-miR-379-3p mir-379/3p -hsa-mir-379 hsa-miR-379 mir-379/379 -hsa-mir-379 hsa-miR-379* mir-379/379* -hsa-mir-378a hsa-miR-378a-5p mir-378a/5p -hsa-mir-378a hsa-miR-378 mir-378a/378 -hsa-mir-378a hsa-miR-378a-3p mir-378a/3p -hsa-mir-378 hsa-miR-378a-5p mir-378/5p -hsa-mir-378 hsa-miR-378a-3p mir-378/3p -hsa-mir-378 hsa-miR-422b mir-378/422b -hsa-mir-378 hsa-miR-378* mir-378/378* -hsa-mir-378 hsa-miR-378 mir-378/378 -hsa-mir-377 hsa-miR-377-5p mir-377/5p -hsa-mir-377 hsa-miR-377-3p mir-377/3p -hsa-mir-377 hsa-miR-377* mir-377/377* -hsa-mir-377 hsa-miR-377 mir-377/377 -hsa-mir-376c hsa-miR-376c-5p mir-376c/5p -hsa-mir-376c hsa-miR-368 mir-376c/368 -hsa-mir-376c hsa-miR-376c-3p mir-376c/3p -hsa-mir-376c hsa-miR-376c mir-376c/376c -hsa-mir-376b hsa-miR-376b-5p mir-376b/5p -hsa-mir-376b hsa-miR-376b-3p mir-376b/3p -hsa-mir-376b hsa-miR-376b mir-376b/376b -hsa-mir-376a-2 hsa-miR-376a-2-5p mir-376a-2/5p -hsa-mir-376a-2 hsa-miR-376a-3p mir-376a-2/3p -hsa-mir-376a-2 hsa-miR-376a mir-376a-2/376a -hsa-mir-376a-1 hsa-miR-376a-5p mir-376a-1/5p -hsa-mir-376a-1 hsa-miR-376a-3p mir-376a-1/3p -hsa-mir-376a-1 hsa-miR-376a* mir-376a-1/376a* -hsa-mir-376a-1 hsa-miR-376a mir-376a-1/376a -hsa-mir-376a hsa-miR-376a-5p mir-376a/5p -hsa-mir-376a hsa-miR-376a-3p mir-376a/3p -hsa-mir-376a hsa-miR-376a mir-376a/376a -hsa-mir-375 hsa-miR-375-5p mir-375/5p -hsa-mir-375 hsa-miR-375-3p mir-375/3p -hsa-mir-375 hsa-miR-375 mir-375/375 -hsa-mir-374c hsa-miR-374c-5p mir-374c/5p -hsa-mir-374c hsa-miR-374c-3p mir-374c/3p -hsa-mir-374c hsa-miR-374c mir-374c/374c -hsa-mir-374b hsa-miR-374b-5p mir-374b/5p -hsa-mir-374b hsa-miR-374b-3p mir-374b/3p -hsa-mir-374b hsa-miR-374b mir-374b/374b -hsa-mir-374b hsa-miR-374b* mir-374b/374b* -hsa-mir-374a hsa-miR-374a-5p mir-374a/5p -hsa-mir-374a hsa-miR-374 mir-374a/374 -hsa-mir-374a hsa-miR-374a-3p mir-374a/3p -hsa-mir-374a hsa-miR-374a mir-374a/374a -hsa-mir-374a hsa-miR-374a* mir-374a/374a* -hsa-mir-374 hsa-miR-374a-5p mir-374/5p -hsa-mir-374 hsa-miR-374 mir-374/374 -hsa-mir-374 hsa-miR-374a mir-374/374a -hsa-mir-374 hsa-miR-374a-3p mir-374/3p -hsa-mir-373 hsa-miR-373-5p mir-373/5p -hsa-mir-373 hsa-miR-373-3p mir-373/3p -hsa-mir-373 hsa-miR-373* mir-373/373* -hsa-mir-373 hsa-miR-373 mir-373/373 -hsa-mir-372 hsa-miR-372-5p mir-372/5p -hsa-mir-372 hsa-miR-372-3p mir-372/3p -hsa-mir-372 hsa-miR-372 mir-372/372 -hsa-mir-371b hsa-miR-371b-5p mir-371b/5p -hsa-mir-371b hsa-miR-371b-3p mir-371b/3p -hsa-mir-371a hsa-miR-371a-5p mir-371a/5p -hsa-mir-371a hsa-miR-371-5p mir-371a/5p -hsa-mir-371a hsa-miR-371a-3p mir-371a/3p -hsa-mir-371a hsa-miR-371 mir-371a/371 -hsa-mir-371 hsa-miR-371a-5p mir-371/5p -hsa-mir-371 hsa-miR-371a-3p mir-371/3p -hsa-mir-371 hsa-miR-371 mir-371/371 -hsa-mir-371 hsa-miR-371-5p mir-371/5p -hsa-mir-371 hsa-miR-371-3p mir-371/3p -hsa-mir-370 hsa-miR-370-5p mir-370/5p -hsa-mir-370 hsa-miR-370-3p mir-370/3p -hsa-mir-370 hsa-miR-370 mir-370/370 -hsa-mir-3692 hsa-miR-3692-5p mir-3692/5p -hsa-mir-3692 hsa-miR-3692-3p mir-3692/3p -hsa-mir-3692 hsa-miR-3692* mir-3692/3692* -hsa-mir-3692 hsa-miR-3692 mir-3692/3692 -hsa-mir-3691 hsa-miR-3691-5p mir-3691/5p -hsa-mir-3691 hsa-miR-3691 mir-3691/3691 -hsa-mir-3691 hsa-miR-3691-3p mir-3691/3p -hsa-mir-369 hsa-miR-369-5p mir-369/5p -hsa-mir-369 hsa-miR-369-3p mir-369/3p -hsa-mir-3689b hsa-miR-3689b-5p mir-3689b/5p -hsa-mir-3689b hsa-miR-3689b-3p mir-3689b/3p -hsa-mir-3689b hsa-miR-3689b mir-3689b/3689b -hsa-mir-3689b hsa-miR-3689b* mir-3689b/3689b* -hsa-mir-3689a hsa-miR-3689a-5p mir-3689a/5p -hsa-mir-3689a hsa-miR-3689a-3p mir-3689a/3p -hsa-mir-3689a hsa-miR-3689 mir-3689a/3689 -hsa-mir-3688-2 hsa-miR-3688-5p mir-3688-2/5p -hsa-mir-3688-2 hsa-miR-3688-3p mir-3688-2/3p -hsa-mir-3688-2 hsa-miR-3688 mir-3688-2/3688 -hsa-mir-1270 hsa-miR-1270 mir-1270/1270 -hsa-mir-3688-1 hsa-miR-3688-3p mir-3688-1/3p -hsa-mir-3688-1 hsa-miR-3688-5p mir-3688-1/5p -hsa-mir-3688 hsa-miR-3688-5p mir-3688/5p -hsa-mir-3688 hsa-miR-3688-3p mir-3688/3p -hsa-mir-3682 hsa-miR-3682-5p mir-3682/5p -hsa-mir-3682 hsa-miR-3682-3p mir-3682/3p -hsa-mir-3682 hsa-miR-3682 mir-3682/3682 -hsa-mir-3681 hsa-miR-3681-5p mir-3681/5p -hsa-mir-3681 hsa-miR-3681-3p mir-3681/3p -hsa-mir-3681 hsa-miR-3681 mir-3681/3681 -hsa-mir-3681 hsa-miR-3681* mir-3681/3681* -hsa-mir-3680-2 hsa-miR-3680-5p mir-3680-2/5p -hsa-mir-3680-2 hsa-miR-3680 mir-3680-2/3680 -hsa-mir-3680-2 hsa-miR-3680-3p mir-3680-2/3p -hsa-mir-3680-1 hsa-miR-3680-5p mir-3680-1/5p -hsa-mir-3680-1 hsa-miR-3680 mir-3680-1/3680 -hsa-mir-3680-1 hsa-miR-3680-3p mir-3680-1/3p -hsa-mir-3680 hsa-miR-3680-5p mir-3680/5p -hsa-mir-3680 hsa-miR-3680-3p mir-3680/3p -hsa-mir-3680 hsa-miR-3680 mir-3680/3680 -hsa-mir-3680 hsa-miR-3680* mir-3680/3680* -hsa-mir-368 hsa-miR-376c-5p mir-368/5p -hsa-mir-368 hsa-miR-368 mir-368/368 -hsa-mir-368 hsa-miR-376c mir-368/376c -hsa-mir-368 hsa-miR-376c-3p mir-368/3p -hsa-mir-3679 hsa-miR-3679-5p mir-3679/5p -hsa-mir-3679 hsa-miR-3679-3p mir-3679/3p -hsa-mir-3678 hsa-miR-3678-5p mir-3678/5p -hsa-mir-3678 hsa-miR-3678-3p mir-3678/3p -hsa-mir-3677 hsa-miR-3677-5p mir-3677/5p -hsa-mir-3677 hsa-miR-3677-3p mir-3677/3p -hsa-mir-3677 hsa-miR-3677 mir-3677/3677 -hsa-mir-3675 hsa-miR-3675-5p mir-3675/5p -hsa-mir-3675 hsa-miR-3675-3p mir-3675/3p -hsa-mir-367 hsa-miR-367-5p mir-367/5p -hsa-mir-367 hsa-miR-367-3p mir-367/3p -hsa-mir-367 hsa-miR-367* mir-367/367* -hsa-mir-367 hsa-miR-367 mir-367/367 -hsa-mir-3667 hsa-miR-3667-5p mir-3667/5p -hsa-mir-3667 hsa-miR-3667-3p mir-3667/3p -hsa-mir-3664 hsa-miR-3664-5p mir-3664/5p -hsa-mir-3664 hsa-miR-3664 mir-3664/3664 -hsa-mir-3664 hsa-miR-3664-3p mir-3664/3p -hsa-mir-3663 hsa-miR-3663-5p mir-3663/5p -hsa-mir-3663 hsa-miR-3663-3p mir-3663/3p -hsa-mir-3653 hsa-miR-3653-5p mir-3653/5p -hsa-mir-3653 hsa-miR-3653-3p mir-3653/3p -hsa-mir-3653 hsa-miR-3653 mir-3653/3653 -hsa-mir-365-2 hsa-miR-365* mir-365-2/365* -hsa-mir-365-2 hsa-miR-365 mir-365-2/365 -hsa-mir-3647 hsa-miR-3647-5p mir-3647/5p -hsa-mir-3647 hsa-miR-3647-3p mir-3647/3p -hsa-mir-363 hsa-miR-363-5p mir-363/5p -hsa-mir-363 hsa-miR-363-3p mir-363/3p -hsa-mir-363 hsa-miR-363* mir-363/363* -hsa-mir-363 hsa-miR-363 mir-363/363 -hsa-mir-3622b hsa-miR-3622b-5p mir-3622b/5p -hsa-mir-3622b hsa-miR-3622b-3p mir-3622b/3p -hsa-mir-3622a hsa-miR-3622a-5p mir-3622a/5p -hsa-mir-3622a hsa-miR-3622a-3p mir-3622a/3p -hsa-mir-3620 hsa-miR-3620-5p mir-3620/5p -hsa-mir-3620 hsa-miR-3620-3p mir-3620/3p -hsa-mir-3620 hsa-miR-3620 mir-3620/3620 -hsa-mir-362 hsa-miR-362-5p mir-362/5p -hsa-mir-362 hsa-miR-362 mir-362/362 -hsa-mir-362 hsa-miR-362-3p mir-362/3p -hsa-mir-3619 hsa-miR-3619-5p mir-3619/5p -hsa-mir-3619 hsa-miR-3619 mir-3619/3619 -hsa-mir-3619 hsa-miR-3619-3p mir-3619/3p -hsa-mir-3617 hsa-miR-3617-5p mir-3617/5p -hsa-mir-3617 hsa-miR-3617-3p mir-3617/3p -hsa-mir-3617 hsa-miR-3617 mir-3617/3617 -hsa-mir-1972 hsa-miR-1972 mir-1972/1972 -hsa-mir-3616 hsa-miR-3616-5p mir-3616/5p -hsa-mir-3616 hsa-miR-3616-3p mir-3616/3p -hsa-mir-3614 hsa-miR-3614-5p mir-3614/5p -hsa-mir-3614 hsa-miR-3614-3p mir-3614/3p -hsa-mir-3613 hsa-miR-3613-5p mir-3613/5p -hsa-mir-3613 hsa-miR-3613-3p mir-3613/3p -hsa-mir-361 hsa-miR-361-5p mir-361/5p -hsa-mir-361 hsa-miR-361 mir-361/361 -hsa-mir-361 hsa-miR-361-3p mir-361/3p -hsa-mir-3607 hsa-miR-3607-5p mir-3607/5p -hsa-mir-3607 hsa-miR-3607-3p mir-3607/3p -hsa-mir-3606 hsa-miR-3606-5p mir-3606/5p -hsa-mir-3606 hsa-miR-3606-3p mir-3606/3p -hsa-mir-3606 hsa-miR-3606 mir-3606/3606 -hsa-mir-3605 hsa-miR-3605-5p mir-3605/5p -hsa-mir-3605 hsa-miR-3605-3p mir-3605/3p -hsa-mir-3591 hsa-miR-3591-5p mir-3591/5p -hsa-mir-3591 hsa-miR-3591-3p mir-3591/3p -hsa-mir-3545 hsa-miR-203b-5p mir-3545/5p -hsa-mir-3545 hsa-miR-3545-5p mir-3545/5p -hsa-mir-3545 hsa-miR-203b-3p mir-3545/3p -hsa-mir-3545 hsa-miR-3545-3p mir-3545/3p -hsa-mir-3529 hsa-miR-3529-5p mir-3529/5p -hsa-mir-3529 hsa-miR-3529-3p mir-3529/3p -hsa-mir-3529 hsa-miR-3529 mir-3529/3529 -hsa-mir-34c hsa-miR-34c-5p mir-34c/5p -hsa-mir-34c hsa-miR-34c mir-34c/34c -hsa-mir-34c hsa-miR-34c-3p mir-34c/3p -hsa-mir-34b hsa-miR-34b-5p mir-34b/5p -hsa-mir-34b hsa-miR-34b-3p mir-34b/3p -hsa-mir-34b hsa-miR-34b* mir-34b/34b* -hsa-mir-34b hsa-miR-34b mir-34b/34b -hsa-mir-34a hsa-miR-34a-5p mir-34a/5p -hsa-mir-34a hsa-miR-34a-3p mir-34a/3p -hsa-mir-548aw hsa-miR-548aw mir-548aw/548aw -hsa-mir-34a hsa-miR-34a mir-34a/34a -hsa-mir-34a hsa-miR-34a* mir-34a/34a* -hsa-mir-345 hsa-miR-345-5p mir-345/5p -hsa-mir-345 hsa-miR-345-3p mir-345/3p -hsa-mir-345 hsa-miR-345 mir-345/345 -hsa-mir-342 hsa-miR-342-5p mir-342/5p -hsa-mir-342 hsa-miR-342-3p mir-342/3p -hsa-mir-342 hsa-miR-342 mir-342/342 -hsa-mir-340 hsa-miR-340-5p mir-340/5p -hsa-mir-340 hsa-miR-340-3p mir-340/3p -hsa-mir-340 hsa-miR-340 mir-340/340 -hsa-mir-340 hsa-miR-340* mir-340/340* -hsa-mir-34 hsa-miR-34a-5p mir-34/5p -hsa-mir-34 hsa-miR-34a mir-34/34a -hsa-mir-34 hsa-miR-34a-3p mir-34/3p -hsa-mir-33b hsa-miR-33b-5p mir-33b/5p -hsa-mir-33b hsa-miR-33b-3p mir-33b/3p -hsa-mir-33b hsa-miR-33b mir-33b/33b -hsa-mir-33b hsa-miR-33b* mir-33b/33b* -hsa-mir-33a hsa-miR-33a-5p mir-33a/5p -hsa-mir-33a hsa-miR-33 mir-33a/33 -hsa-mir-33a hsa-miR-33a-3p mir-33a/3p -hsa-mir-33a hsa-miR-33a mir-33a/33a -hsa-mir-33a hsa-miR-33a* mir-33a/33a* -hsa-mir-339 hsa-miR-339-5p mir-339/5p -hsa-mir-339 hsa-miR-339 mir-339/339 -hsa-mir-339 hsa-miR-339-3p mir-339/3p -hsa-mir-338 hsa-miR-338-5p mir-338/5p -hsa-mir-338 hsa-miR-338-3p mir-338/3p -hsa-mir-338 hsa-miR-338 mir-338/338 -hsa-mir-337 hsa-miR-337-5p mir-337/5p -hsa-mir-337 hsa-miR-337-3p mir-337/3p -hsa-mir-337 hsa-miR-337 mir-337/337 -hsa-mir-3670-2 hsa-miR-3670 mir-3670-2/3670 -hsa-mir-335 hsa-miR-335-5p mir-335/5p -hsa-mir-335 hsa-miR-335-3p mir-335/3p -hsa-mir-335 hsa-miR-335 mir-335/335 -hsa-mir-335 hsa-miR-335* mir-335/335* -hsa-mir-331 hsa-miR-331-5p mir-331/5p -hsa-mir-331 hsa-miR-331-3p mir-331/3p -hsa-mir-5689 hsa-miR-5689 mir-5689/5689 -hsa-mir-331 hsa-miR-331 mir-331/331 -hsa-mir-4444-2 hsa-miR-4444 mir-4444-2/4444 -hsa-mir-330 hsa-miR-330-5p mir-330/5p -hsa-mir-330 hsa-miR-330-3p mir-330/3p -hsa-mir-5680 hsa-miR-5680 mir-5680/5680 -hsa-mir-330 hsa-miR-330 mir-330/330 -hsa-mir-5693 hsa-miR-5693 mir-5693/5693 -hsa-mir-1254-1 hsa-miR-1254 mir-1254-1/1254 -hsa-mir-5188 hsa-miR-5188 mir-5188/5188 -hsa-mir-5701-2 hsa-miR-5701 mir-5701-2/5701 -hsa-mir-33 hsa-miR-33a-5p mir-33/5p -hsa-mir-5696 hsa-miR-5696 mir-5696/5696 -hsa-mir-33 hsa-miR-33 mir-33/33 -hsa-mir-33 hsa-miR-33a mir-33/33a -hsa-mir-33 hsa-miR-33a-3p mir-33/3p -hsa-mir-329-2 hsa-miR-329-5p mir-329-2/5p -hsa-mir-329-2 hsa-miR-329-3p mir-329-2/3p -hsa-mir-329-2 hsa-miR-329 mir-329-2/329 -hsa-mir-329-1 hsa-miR-329-5p mir-329-1/5p -hsa-mir-329-1 hsa-miR-329-3p mir-329-1/3p -hsa-mir-329-1 hsa-miR-329 mir-329-1/329 -hsa-mir-328 hsa-miR-328-5p mir-328/5p -hsa-mir-328 hsa-miR-328-3p mir-328/3p -hsa-mir-328 hsa-miR-328 mir-328/328 -hsa-mir-324 hsa-miR-324-5p mir-324/5p -hsa-mir-324 hsa-miR-324-3p mir-324/3p -hsa-mir-323b hsa-miR-323b-3p mir-323b/3p -hsa-mir-323b hsa-miR-323b-5p mir-323b/5p -hsa-mir-323b hsa-miR-323b-3p mir-323b/3p -hsa-mir-323a hsa-miR-323a-5p mir-323a/5p -hsa-mir-323a hsa-miR-323-5p mir-323a/5p -hsa-mir-323a hsa-miR-323a-3p mir-323a/3p -hsa-mir-323a hsa-miR-323 mir-323a/323 -hsa-mir-5692b hsa-miR-5692b mir-5692b/5692b -hsa-mir-5100 hsa-miR-5100 mir-5100/5100 -hsa-mir-5691 hsa-miR-5691 mir-5691/5691 -hsa-mir-5695 hsa-miR-5695 mir-5695/5695 -hsa-mir-5692c-2 hsa-miR-5692c mir-5692c-2/5692c -hsa-mir-323a hsa-miR-323-3p mir-323a/3p -hsa-mir-323 hsa-miR-323a-5p mir-323/5p -hsa-mir-323 hsa-miR-323-5p mir-323/5p -hsa-mir-323 hsa-miR-323a-3p mir-323/3p -hsa-mir-5687 hsa-miR-5687 mir-5687/5687 -hsa-mir-323 hsa-miR-323 mir-323/323 -hsa-mir-323 hsa-miR-323-3p mir-323/3p -hsa-mir-5093 hsa-miR-5093 mir-5093/5093 -hsa-mir-5091 hsa-miR-5091 mir-5091/5091 -hsa-mir-5698 hsa-miR-5698 mir-5698/5698 -hsa-mir-320a hsa-miR-320a-5p mir-320a/5p -hsa-mir-320a hsa-miR-320a-3p mir-320a/3p -hsa-mir-320a hsa-miR-320a mir-320a/320a -hsa-mir-3200 hsa-miR-3200-5p mir-3200/5p -hsa-mir-3200 hsa-miR-3200-3p mir-3200/3p -hsa-mir-3200 hsa-miR-3200 mir-3200/3200 -hsa-mir-5705 hsa-miR-5705 mir-5705/5705 -hsa-mir-320 hsa-miR-320a-5p mir-320/5p -hsa-mir-320 hsa-miR-320a-3p mir-320/3p -hsa-mir-320 hsa-miR-320 mir-320/320 -hsa-mir-32 hsa-miR-32-5p mir-32/5p -hsa-mir-32 hsa-miR-32-3p mir-32/3p -hsa-mir-32 hsa-miR-32 mir-32/32 -hsa-mir-32 hsa-miR-32* mir-32/32* -hsa-mir-3194 hsa-miR-3194-5p mir-3194/5p -hsa-mir-3194 hsa-miR-3194 mir-3194/3194 -hsa-mir-3194 hsa-miR-3194-3p mir-3194/3p -hsa-mir-3192 hsa-miR-3192-5p mir-3192/5p -hsa-mir-3192 hsa-miR-3192-3p mir-3192/3p -hsa-mir-5700 hsa-miR-5700 mir-5700/5700 -hsa-mir-5707 hsa-miR-5707 mir-5707/5707 -hsa-mir-3192 hsa-miR-3192 mir-3192/3192 -hsa-mir-3190 hsa-miR-3190-3p mir-3190/3p -hsa-mir-5683 hsa-miR-5683 mir-5683/5683 -hsa-mir-3190 hsa-miR-3190 mir-3190/3190 -hsa-mir-3189 hsa-miR-3189-5p mir-3189/5p -hsa-mir-5186 hsa-miR-5186 mir-5186/5186 -hsa-mir-3189 hsa-miR-3189-3p mir-3189/3p -hsa-mir-3189 hsa-miR-3189 mir-3189/3189 -hsa-mir-5692a-2 hsa-miR-5692a mir-5692a-2/5692a -hsa-mir-5092 hsa-miR-5092 mir-5092/5092 -hsa-mir-5704 hsa-miR-5704 mir-5704/5704 -hsa-mir-3187 hsa-miR-3187-3p mir-3187/3p -hsa-mir-5572 hsa-miR-5572 mir-5572/5572 -hsa-mir-3187 hsa-miR-3187-5p mir-3187/5p -hsa-mir-5682 hsa-miR-5682 mir-5682/5682 -hsa-mir-5087 hsa-miR-5087 mir-5087/5087 -hsa-mir-3186 hsa-miR-3186-5p mir-3186/5p -hsa-mir-3186 hsa-miR-3186-3p mir-3186/3p -hsa-mir-3184 hsa-miR-3184-5p mir-3184/5p -hsa-mir-3184 hsa-miR-3184-3p mir-3184/3p -hsa-mir-3184 hsa-miR-3184 mir-3184/3184 -hsa-mir-4666b hsa-miR-4666b mir-4666b/4666b -hsa-mir-5690 hsa-miR-5690 mir-5690/5690 -hsa-mir-3180-3 hsa-miR-3180-5p mir-3180-3/5p -hsa-mir-3180-3 hsa-miR-3180-3p mir-3180-3/3p -hsa-mir-3180-2 hsa-miR-3180-5p mir-3180-2/5p -hsa-mir-3180-2 hsa-miR-3180-3p mir-3180-2/3p -hsa-mir-5191 hsa-miR-5191 mir-5191/5191 -hsa-mir-5194 hsa-miR-5194 mir-5194/5194 -hsa-mir-664b hsa-miR-664b-3p mir-664b/3p -hsa-mir-664b hsa-miR-664b-5p mir-664b/5p -hsa-mir-5702 hsa-miR-5702 mir-5702/5702 -hsa-mir-3180-1 hsa-miR-3180-5p mir-3180-1/5p -hsa-mir-3180-1 hsa-miR-3180-3p mir-3180-1/3p -hsa-mir-5697 hsa-miR-5697 mir-5697/5697 -hsa-mir-5708 hsa-miR-5708 mir-5708/5708 -hsa-mir-3177 hsa-miR-3177 mir-3177/3177 -hsa-mir-3177 hsa-miR-3177-3p mir-3177/3p -hsa-mir-3177 hsa-miR-3177-5p mir-3177/5p -hsa-mir-3173 hsa-miR-3173-5p mir-3173/5p -hsa-mir-7641-2 hsa-miR-7641 mir-7641-2/7641 -hsa-mir-3173 hsa-miR-3173-3p mir-3173/3p -hsa-mir-3173 hsa-miR-3173 mir-3173/3173 -hsa-mir-6723 hsa-miR-6723-5p mir-6723/5p -hsa-mir-1273a hsa-miR-1273a mir-1273a/1273a -hsa-mir-3162 hsa-miR-3162-5p mir-3162/5p -hsa-mir-3162 hsa-miR-3162 mir-3162/3162 -hsa-mir-3162 hsa-miR-3162-3p mir-3162/3p -hsa-mir-3160-2 hsa-miR-3160-3p mir-3160-2/3p -hsa-mir-3160-2 hsa-miR-3160-5p mir-3160-2/5p -hsa-mir-3160-1 hsa-miR-3160-3p mir-3160-1/3p -hsa-mir-3160-1 hsa-miR-3160-5p mir-3160-1/5p -hsa-mir-3158-2 hsa-miR-3158-5p mir-3158-2/5p -hsa-mir-3687-2 hsa-miR-3687 mir-3687-2/3687 -hsa-mir-3158-2 hsa-miR-3158-3p mir-3158-2/3p -hsa-mir-3158-2 hsa-miR-3158 mir-3158-2/3158 -hsa-mir-3158-1 hsa-miR-3158-5p mir-3158-1/5p -hsa-mir-3158-1 hsa-miR-3158-3p mir-3158-1/3p -hsa-mir-3158-1 hsa-miR-3158 mir-3158-1/3158 -hsa-mir-3157 hsa-miR-3157-5p mir-3157/5p -hsa-mir-3157 hsa-miR-3157 mir-3157/3157 -hsa-mir-3157 hsa-miR-3157-3p mir-3157/3p -hsa-mir-3156-3 hsa-miR-3156-5p mir-3156-3/5p -hsa-mir-3156-3 hsa-miR-3156 mir-3156-3/3156 -hsa-mir-3156-3 hsa-miR-3156-5p mir-3156-3/5p -hsa-let-7c hsa-let-7c let-7c/7c -hsa-mir-3156-2 hsa-miR-3156-5p mir-3156-2/5p -hsa-mir-3156-2 hsa-miR-3156 mir-3156-2/3156 -hsa-mir-3156-2 hsa-miR-3156-3p mir-3156-2/3p -hsa-mir-3156-1 hsa-miR-3156-5p mir-3156-1/5p -hsa-mir-3156-1 hsa-miR-3156 mir-3156-1/3156 -hsa-mir-3156-1 hsa-miR-3156-3p mir-3156-1/3p -hsa-mir-3155a hsa-miR-3155a mir-3155a/3155a -hsa-mir-3155a hsa-miR-3155 mir-3155a/3155 -hsa-mir-3155 hsa-miR-3155a mir-3155/3155a -hsa-mir-3155 hsa-miR-3155 mir-3155/3155 -hsa-mir-3152 hsa-miR-3152-5p mir-3152/5p -hsa-mir-3152 hsa-miR-3152-3p mir-3152/3p -hsa-mir-3151 hsa-miR-3151-5p mir-3151/5p -hsa-mir-3151 hsa-miR-3151-3p mir-3151/3p -hsa-mir-3151 hsa-miR-3151 mir-3151/3151 -hsa-mir-103b-2 hsa-miR-103b mir-103b-2/103b -hsa-mir-3150b hsa-miR-3150b mir-3150b/3150b -hsa-mir-3150b hsa-miR-3150b-3p mir-3150b/3p -hsa-mir-3150b hsa-miR-3150b-5p mir-3150b/5p -hsa-mir-3150a hsa-miR-3150a-3p mir-3150a/3p -hsa-mir-3150a hsa-miR-3150a-5p mir-3150a/5p -hsa-mir-3150a hsa-miR-3150 mir-3150a/3150 -hsa-mir-3150a hsa-miR-3150a-3p mir-3150a/3p -hsa-mir-3150a hsa-miR-3150a-5p mir-3150a/5p -hsa-mir-107 hsa-miR-107 mir-107/107 -hsa-mir-3150 hsa-miR-3150a-3p mir-3150/3p -hsa-mir-3150 hsa-miR-3150a-5p mir-3150/5p -hsa-mir-3150 hsa-miR-3150 mir-3150/3150 -hsa-mir-3145 hsa-miR-3145-5p mir-3145/5p -hsa-mir-3145 hsa-miR-3145-3p mir-3145/3p -hsa-mir-1179 hsa-miR-1179 mir-1179/1179 -hsa-mir-3145 hsa-miR-3145 mir-3145/3145 -hsa-mir-1181 hsa-miR-1181 mir-1181/1181 -hsa-mir-1182 hsa-miR-1182 mir-1182/1182 -hsa-mir-1183 hsa-miR-1183 mir-1183/1183 -hsa-mir-1184-1 hsa-miR-1184 mir-1184-1/1184 -hsa-mir-1184-2 hsa-miR-1184 mir-1184-2/1184 -hsa-mir-1184-3 hsa-miR-1184 mir-1184-3/1184 -hsa-mir-1193 hsa-miR-1193 mir-1193/1193 -hsa-mir-1197 hsa-miR-1197 mir-1197/1197 -hsa-mir-1200 hsa-miR-1200 mir-1200/1200 -hsa-mir-1202 hsa-miR-1202 mir-1202/1202 -hsa-mir-1203 hsa-miR-1203 mir-1203/1203 -hsa-mir-1204 hsa-miR-1204 mir-1204/1204 -hsa-mir-1205 hsa-miR-1205 mir-1205/1205 -hsa-mir-1206 hsa-miR-1206 mir-1206/1206 -hsa-mir-3144 hsa-miR-3144-5p mir-3144/5p -hsa-mir-3144 hsa-miR-3144-3p mir-3144/3p -hsa-mir-1208 hsa-miR-1208 mir-1208/1208 -hsa-mir-3140 hsa-miR-3140-5p mir-3140/5p -hsa-mir-3140 hsa-miR-3140-3p mir-3140/3p -hsa-mir-3140 hsa-miR-3140 mir-3140/3140 -hsa-mir-3136 hsa-miR-3136-5p mir-3136/5p -hsa-mir-1227 hsa-miR-1227 mir-1227/1227 -hsa-mir-3136 hsa-miR-3136-3p mir-3136/3p -hsa-mir-1231 hsa-miR-1231 mir-1231/1231 -hsa-mir-3135a hsa-miR-3135a mir-3135a/3135a -hsa-mir-3135a hsa-miR-3135 mir-3135a/3135 -hsa-mir-3135 hsa-miR-3135a mir-3135/3135a -hsa-mir-3135 hsa-miR-3135 mir-3135/3135 -hsa-mir-3130-2 hsa-miR-3130-5p mir-3130-2/5p -hsa-mir-3130-2 hsa-miR-3130-3p mir-3130-2/3p -hsa-mir-3130-1 hsa-miR-3130-5p mir-3130-1/5p -hsa-mir-3130-1 hsa-miR-3130-3p mir-3130-1/3p -hsa-mir-1243 hsa-miR-1243 mir-1243/1243 -hsa-mir-1244-1 hsa-miR-1244 mir-1244-1/1244 -hsa-mir-1244-2 hsa-miR-1244 mir-1244-2/1244 -hsa-mir-1244-3 hsa-miR-1244 mir-1244-3/1244 -hsa-mir-3129 hsa-miR-3129-5p mir-3129/5p -hsa-mir-3129 hsa-miR-3129 mir-3129/3129 -hsa-mir-3129 hsa-miR-3129-3p mir-3129/3p -hsa-mir-1246 hsa-miR-1246 mir-1246/1246 -hsa-mir-1248 hsa-miR-1248 mir-1248/1248 -hsa-mir-3127 hsa-miR-3127-5p mir-3127/5p -hsa-mir-1251 hsa-miR-1251 mir-1251/1251 -hsa-mir-3127 hsa-miR-3127 mir-3127/3127 -hsa-mir-1253 hsa-miR-1253 mir-1253/1253 -hsa-mir-1254 hsa-miR-1254 mir-1254/1254 -hsa-mir-1254-2 hsa-miR-1254 mir-1254-2/1254 -hsa-mir-1255a hsa-miR-1255a mir-1255a/1255a -hsa-mir-1255b-1 hsa-miR-1255b mir-1255b-1/1255b -hsa-mir-1255b-2 hsa-miR-1255b mir-1255b-2/1255b -hsa-mir-1256 hsa-miR-1256 mir-1256/1256 -hsa-mir-1257 hsa-miR-1257 mir-1257/1257 -hsa-mir-1258 hsa-miR-1258 mir-1258/1258 -hsa-mir-3127 hsa-miR-3127-3p mir-3127/3p -hsa-mir-3126 hsa-miR-3126-5p mir-3126/5p -hsa-mir-3126 hsa-miR-3126-3p mir-3126/3p -hsa-mir-1260b hsa-miR-1260b mir-1260b/1260b -hsa-mir-1261 hsa-miR-1261 mir-1261/1261 -hsa-mir-1262 hsa-miR-1262 mir-1262/1262 -hsa-mir-1263 hsa-miR-1263 mir-1263/1263 -hsa-mir-1264 hsa-miR-1264 mir-1264/1264 -hsa-mir-1265 hsa-miR-1265 mir-1265/1265 -hsa-mir-3124 hsa-miR-3124-3p mir-3124/3p -hsa-mir-1267 hsa-miR-1267 mir-1267/1267 -hsa-mir-3124 hsa-miR-3124-5p mir-3124/5p -hsa-mir-1268b hsa-miR-1268b mir-1268b/1268b -hsa-mir-3124 hsa-miR-3124 mir-3124/3124 -hsa-mir-1269b hsa-miR-1269b mir-1269b/1269b -hsa-mir-3121 hsa-miR-3121 mir-3121/3121 -hsa-mir-1270-2 hsa-miR-1270 mir-1270-2/1270 -hsa-mir-3121 hsa-miR-3121-3p mir-3121/3p -hsa-mir-1272 hsa-miR-1272 mir-1272/1272 -hsa-mir-1273 hsa-miR-1273 mir-1273/1273 -hsa-mir-1273c hsa-miR-1273c mir-1273c/1273c -hsa-mir-1273d hsa-miR-1273d mir-1273d/1273d -hsa-mir-1273e hsa-miR-1273e mir-1273e/1273e -hsa-mir-1273f hsa-miR-1273f mir-1273f/1273f -hsa-mir-3121 hsa-miR-3121-5p mir-3121/5p -hsa-mir-1275 hsa-miR-1275 mir-1275/1275 -hsa-mir-1276 hsa-miR-1276 mir-1276/1276 -hsa-mir-1278 hsa-miR-1278 mir-1278/1278 -hsa-mir-1279 hsa-miR-1279 mir-1279/1279 -hsa-mir-3120 hsa-miR-3120 mir-3120/3120 -hsa-mir-1280 hsa-miR-1280 mir-1280/1280 -hsa-mir-1281 hsa-miR-1281 mir-1281/1281 -hsa-mir-1282 hsa-miR-1282 mir-1282/1282 -hsa-mir-1283-1 hsa-miR-1283 mir-1283-1/1283 -hsa-mir-1283-2 hsa-miR-1283 mir-1283-2/1283 -hsa-mir-1284 hsa-miR-1284 mir-1284/1284 -hsa-mir-3120 hsa-miR-3120-3p mir-3120/3p -hsa-mir-3120 hsa-miR-3120-5p mir-3120/5p -hsa-mir-1286 hsa-miR-1286 mir-1286/1286 -hsa-mir-1288 hsa-miR-1288 mir-1288/1288 -hsa-mir-1289-1 hsa-miR-1289 mir-1289-1/1289 -hsa-mir-1289-2 hsa-miR-1289 mir-1289-2/1289 -hsa-mir-3117 hsa-miR-3117 mir-3117/3117 -hsa-mir-3117 hsa-miR-3117-3p mir-3117/3p -hsa-mir-3117 hsa-miR-3117-5p mir-3117/5p -hsa-mir-1290 hsa-miR-1290 mir-1290/1290 -hsa-mir-1291 hsa-miR-1291 mir-1291/1291 -hsa-mir-31 hsa-miR-31-5p mir-31/5p -hsa-mir-1293 hsa-miR-1293 mir-1293/1293 -hsa-mir-1294 hsa-miR-1294 mir-1294/1294 -hsa-mir-31 hsa-miR-31-3p mir-31/3p -hsa-mir-31 hsa-miR-31 mir-31/31 -hsa-mir-1297 hsa-miR-1297 mir-1297/1297 -hsa-mir-31 hsa-miR-31* mir-31/31* -hsa-mir-1299 hsa-miR-1299 mir-1299/1299 -hsa-mir-30e hsa-miR-30e-5p mir-30e/5p -hsa-mir-1302-1 hsa-miR-1302 mir-1302-1/1302 -hsa-mir-1302-10 hsa-miR-1302 mir-1302-10/1302 -hsa-mir-1302-11 hsa-miR-1302 mir-1302-11/1302 -hsa-mir-1302-2 hsa-miR-1302 mir-1302-2/1302 -hsa-mir-1302-3 hsa-miR-1302 mir-1302-3/1302 -hsa-mir-1302-4 hsa-miR-1302 mir-1302-4/1302 -hsa-mir-1302-5 hsa-miR-1302 mir-1302-5/1302 -hsa-mir-1302-6 hsa-miR-1302 mir-1302-6/1302 -hsa-mir-1302-7 hsa-miR-1302 mir-1302-7/1302 -hsa-mir-1302-8 hsa-miR-1302 mir-1302-8/1302 -hsa-mir-1302-9 hsa-miR-1302 mir-1302-9/1302 -hsa-mir-1303 hsa-miR-1303 mir-1303/1303 -hsa-mir-30e hsa-miR-30e-3p mir-30e/3p -hsa-mir-1305 hsa-miR-1305 mir-1305/1305 -hsa-mir-30e hsa-miR-30e mir-30e/30e -hsa-mir-30e hsa-miR-30e* mir-30e/30e* -hsa-mir-30d hsa-miR-30d-5p mir-30d/5p -hsa-mir-30d hsa-miR-30d-3p mir-30d/3p -hsa-mir-30d hsa-miR-30d mir-30d/30d -hsa-mir-30d hsa-miR-30d* mir-30d/30d* -hsa-mir-30c-2 hsa-miR-30c-5p mir-30c-2/5p -hsa-mir-30c-2 hsa-miR-30c-2-3p mir-30c-2/3p -hsa-mir-1321 hsa-miR-1321 mir-1321/1321 -hsa-mir-1322 hsa-miR-1322 mir-1322/1322 -hsa-mir-1323 hsa-miR-1323 mir-1323/1323 -hsa-mir-1324 hsa-miR-1324 mir-1324/1324 -hsa-mir-30c-2 hsa-miR-30c mir-30c-2/30c -hsa-mir-133a-2 hsa-miR-133a mir-133a-2/133a -hsa-mir-133b hsa-miR-133b mir-133b/133b -hsa-mir-30c-2 hsa-miR-30c-2* mir-30c-2/2* -hsa-mir-30c-1 hsa-miR-30c-5p mir-30c-1/5p -hsa-mir-30c-1 hsa-miR-30c-1-3p mir-30c-1/3p -hsa-mir-30c-1 hsa-miR-30c-1* mir-30c-1/1* -hsa-mir-30c-1 hsa-miR-30c mir-30c-1/30c -hsa-mir-30c hsa-miR-30c-5p mir-30c/5p -hsa-mir-30c hsa-miR-30c mir-30c/30c -hsa-mir-30c hsa-miR-30c-2-3p mir-30c/3p -hsa-mir-30b hsa-miR-30b-5p mir-30b/5p -hsa-mir-30b hsa-miR-30b-3p mir-30b/3p -hsa-mir-30b hsa-miR-30b mir-30b/30b -hsa-mir-30b hsa-miR-30b* mir-30b/30b* -hsa-mir-30a hsa-miR-30a mir-30a/30a -hsa-mir-30a hsa-miR-30a* mir-30a/30a* -hsa-mir-3074 hsa-miR-3074-5p mir-3074/5p -hsa-mir-3074 hsa-miR-3074-3p mir-3074/3p -hsa-mir-3074 hsa-miR-3074 mir-3074/3074 -hsa-mir-3065 hsa-miR-3065-5p mir-3065/5p -hsa-mir-3065 hsa-miR-3065-3p mir-3065/3p -hsa-mir-3064 hsa-miR-3064-5p mir-3064/5p -hsa-mir-3064 hsa-miR-3064-3p mir-3064/3p -hsa-mir-302d hsa-miR-302d-5p mir-302d/5p -hsa-mir-1468 hsa-miR-1468 mir-1468/1468 -hsa-mir-1469 hsa-miR-1469 mir-1469/1469 -hsa-mir-302d hsa-miR-302d-3p mir-302d/3p -hsa-mir-302d hsa-miR-302d* mir-302d/302d* -hsa-mir-302d hsa-miR-302d mir-302d/302d -hsa-mir-302c hsa-miR-302c-5p mir-302c/5p -hsa-mir-302c hsa-miR-302c-3p mir-302c/3p -hsa-mir-1470 hsa-miR-1470 mir-1470/1470 -hsa-mir-1471 hsa-miR-1471 mir-1471/1471 -hsa-mir-302c hsa-miR-302c* mir-302c/302c* -hsa-mir-302c hsa-miR-302c mir-302c/302c -hsa-mir-302b hsa-miR-302b-5p mir-302b/5p -hsa-mir-302b hsa-miR-302b-3p mir-302b/3p -hsa-mir-302b hsa-miR-302b* mir-302b/302b* -hsa-mir-302b hsa-miR-302b mir-302b/302b -hsa-mir-302a hsa-miR-302a-5p mir-302a/5p -hsa-mir-302a hsa-miR-302a-3p mir-302a/3p -hsa-mir-302a hsa-miR-302a* mir-302a/302a* -hsa-mir-302a hsa-miR-302a mir-302a/302a -hsa-mir-302 hsa-miR-302a-5p mir-302/5p -hsa-mir-151b hsa-miR-151b mir-151b/151b -hsa-mir-302 hsa-miR-302a-3p mir-302/3p -hsa-mir-302 hsa-miR-302a mir-302/302a -hsa-mir-301b hsa-miR-301b-5p mir-301b/5p -hsa-mir-301b hsa-miR-301b-3p mir-301b/3p -hsa-mir-1538 hsa-miR-1538 mir-1538/1538 -hsa-mir-1539 hsa-miR-1539 mir-1539/1539 -hsa-mir-301b hsa-miR-301b mir-301b/301b -hsa-miR-301a hsa-miR-301 mir-301a/301 -hsa-mir-301a hsa-miR-301a-5p mir-301a/5p -hsa-mir-301a hsa-miR-301a-3p mir-301a/3p -hsa-mir-1587 hsa-miR-1587 mir-1587/1587 -hsa-mir-301a hsa-miR-301a mir-301a/301a -hsa-mir-301 hsa-miR-301 mir-301/301 -hsa-mir-301 hsa-miR-301a-5p mir-301/5p -hsa-mir-301 hsa-miR-301a-3p mir-301/3p -hsa-mir-301 hsa-miR-301a mir-301/301a -hsa-mir-29c hsa-miR-29c-5p mir-29c/5p -hsa-mir-29c hsa-miR-29c-3p mir-29c/3p -hsa-mir-29c hsa-miR-29c* mir-29c/29c* -hsa-mir-29c hsa-miR-29c mir-29c/29c -hsa-mir-29b-2 hsa-miR-29b-1-5p mir-29b-2/5p -hsa-mir-29b-2 hsa-miR-29b-2-5p mir-29b-2/5p -hsa-mir-29b-2 hsa-miR-29b-3p mir-29b-2/3p -hsa-mir-29b-2 hsa-miR-29b-2* mir-29b-2/2* -hsa-mir-29b-2 hsa-miR-29b mir-29b-2/29b -hsa-mir-181b-1 hsa-miR-181b mir-181b-1/181b -hsa-mir-29b-1 hsa-miR-29b-1-5p mir-29b-1/5p -hsa-mir-29b-1 hsa-miR-29b-2-5p mir-29b-1/5p -hsa-mir-29b-1 hsa-miR-29b-3p mir-29b-1/3p -hsa-mir-29b-1 hsa-miR-29b-1* mir-29b-1/1* -hsa-mir-29b-1 hsa-miR-29b mir-29b-1/29b -hsa-mir-29a hsa-miR-29a-5p mir-29a/5p -hsa-mir-1825 hsa-miR-1825 mir-1825/1825 -hsa-mir-1827 hsa-miR-1827 mir-1827/1827 -hsa-mir-29a hsa-miR-29a-3p mir-29a/3p -hsa-mir-29a hsa-miR-29a* mir-29a/29a* -hsa-mir-184 hsa-miR-184 mir-184/184 -hsa-mir-29a hsa-miR-29a mir-29a/29a -hsa-mir-299 hsa-miR-299 mir-299/299 -hsa-mir-299 hsa-miR-299-3p mir-299/3p -hsa-mir-299 hsa-miR-299-5p mir-299/5p -hsa-mir-299 hsa-miR-299-3p mir-299/3p -hsa-mir-2964a hsa-miR-2964a-5p mir-2964a/5p -hsa-mir-2964a hsa-miR-2964a-3p mir-2964a/3p -hsa-mir-296 hsa-miR-296-5p mir-296/5p -hsa-mir-296 hsa-miR-296 mir-296/296 -hsa-mir-296 hsa-miR-296-3p mir-296/3p -hsa-mir-29 hsa-miR-29a-5p mir-29/5p -hsa-mir-29 hsa-miR-29a-3p mir-29/3p -hsa-mir-29 hsa-miR-29a mir-29/29a -hsa-mir-28 hsa-miR-28-5p mir-28/5p -hsa-mir-28 hsa-miR-28 mir-28/28 -hsa-mir-28 hsa-miR-28-3p mir-28/3p -hsa-mir-27b hsa-miR-27b-5p mir-27b/5p -hsa-mir-27b hsa-miR-27b-3p mir-27b/3p -hsa-mir-27b hsa-miR-27b* mir-27b/27b* -hsa-mir-1913 hsa-miR-1913 mir-1913/1913 -hsa-mir-27b hsa-miR-27b mir-27b/27b -hsa-mir-27a hsa-miR-27a-5p mir-27a/5p -hsa-mir-27a hsa-miR-27a-3p mir-27a/3p -hsa-mir-27a hsa-miR-27a* mir-27a/27a* -hsa-mir-27a hsa-miR-27a mir-27a/27a -hsa-mir-27 hsa-miR-27a-5p mir-27/5p -hsa-mir-27 hsa-miR-27a-3p mir-27/3p -hsa-mir-27 hsa-miR-27a mir-27/27a -hsa-mir-26b hsa-miR-26b-5p mir-26b/5p -hsa-mir-26b hsa-miR-26b-3p mir-26b/3p -hsa-mir-26b hsa-miR-26b mir-26b/26b -hsa-mir-26b hsa-miR-26b* mir-26b/26b* -hsa-mir-26a-2 hsa-miR-26a-5p mir-26a-2/5p -hsa-mir-26a-2 hsa-miR-26a-2-3p mir-26a-2/3p -hsa-mir-26a-2 hsa-miR-26a-2* mir-26a-2/2* -hsa-mir-196a-1 hsa-miR-196a mir-196a-1/196a -hsa-mir-26a-2 hsa-miR-26a mir-26a-2/26a -hsa-mir-26a-1 hsa-miR-26a-1-3p mir-26a-1/3p -hsa-mir-26a-1 hsa-miR-26a-5p mir-26a-1/5p -hsa-mir-26a-1 hsa-miR-26a mir-26a-1/26a -hsa-mir-197 hsa-miR-197 mir-197/197 -hsa-mir-1972-1 hsa-miR-1972 mir-1972-1/1972 -hsa-mir-1972-2 hsa-miR-1972 mir-1972-2/1972 -hsa-mir-1973 hsa-miR-1973 mir-1973/1973 -hsa-mir-1976 hsa-miR-1976 mir-1976/1976 -hsa-mir-198 hsa-miR-198 mir-198/198 -hsa-mir-26a-1 hsa-miR-26a-1* mir-26a-1/1* -hsa-mir-26a hsa-miR-26a-1-3p mir-26a/3p -hsa-mir-26a hsa-miR-26a-5p mir-26a/5p -hsa-mir-26a hsa-miR-26a mir-26a/26a -hsa-mir-2682 hsa-miR-2682-5p mir-2682/5p -hsa-mir-2682 hsa-miR-2682-3p mir-2682/3p -hsa-mir-2682 hsa-miR-2682 mir-2682/2682 -hsa-mir-2682 hsa-miR-2682* mir-2682/2682* -hsa-mir-2681 hsa-miR-2681-5p mir-2681/5p -hsa-mir-2681 hsa-miR-2681-3p mir-2681/3p -hsa-mir-2681 hsa-miR-2681* mir-2681/2681* -hsa-mir-2681 hsa-miR-2681 mir-2681/2681 -hsa-mir-25 hsa-miR-25-5p mir-25/5p -hsa-mir-25 hsa-miR-25-3p mir-25/3p -hsa-mir-25 hsa-miR-25* mir-25/25* -hsa-mir-25 hsa-miR-25 mir-25/25 -hsa-mir-2467 hsa-miR-2467-5p mir-2467/5p -hsa-mir-2467 hsa-miR-2467-3p mir-2467/3p -hsa-mir-24-2 hsa-miR-24-2-5p mir-24-2/5p -hsa-mir-24-2 hsa-miR-24-3p mir-24-2/3p -hsa-mir-24-2 hsa-miR-24-2* mir-24-2/2* -hsa-mir-24-2 hsa-miR-24 mir-24-2/24 -hsa-mir-2052 hsa-miR-2052 mir-2052/2052 -hsa-mir-2053 hsa-miR-2053 mir-2053/2053 -hsa-mir-2054 hsa-miR-2054 mir-2054/2054 -hsa-mir-206 hsa-miR-206 mir-206/206 -hsa-mir-24-1 hsa-miR-24-1-5p mir-24-1/5p -hsa-mir-24-1 hsa-miR-189 mir-24-1/189 -hsa-mir-24-1 hsa-miR-24-3p mir-24-1/3p -hsa-mir-24-1 hsa-miR-24-1* mir-24-1/1* -hsa-mir-24-1 hsa-miR-24 mir-24-1/24 -hsa-mir-23b hsa-miR-23b-5p mir-23b/5p -hsa-mir-23b hsa-miR-23b-3p mir-23b/3p -hsa-mir-23b hsa-miR-23b* mir-23b/23b* -hsa-mir-23b hsa-miR-23b mir-23b/23b -hsa-mir-211 hsa-miR-211 mir-211/211 -hsa-mir-2110 hsa-miR-2110 mir-2110/2110 -hsa-mir-2113 hsa-miR-2113 mir-2113/2113 -hsa-mir-23a hsa-miR-23a-5p mir-23a/5p -hsa-mir-23a hsa-miR-23a* mir-23a/23a* -hsa-mir-23a hsa-miR-23a mir-23a/23a -hsa-mir-2355 hsa-miR-2355-5p mir-2355/5p -hsa-mir-2355 hsa-miR-2355 mir-2355/2355 -hsa-mir-2355 hsa-miR-2355-3p mir-2355/3p -hsa-mir-2117 hsa-miR-2117 mir-2117/2117 -hsa-mir-2277 hsa-miR-2277-5p mir-2277/5p -hsa-mir-2277 hsa-miR-2277-3p mir-2277/3p -hsa-mir-224 hsa-miR-224-5p mir-224/5p -hsa-mir-224 hsa-miR-224-3p mir-224/3p -hsa-mir-224 hsa-miR-224 mir-224/224 -hsa-mir-224 hsa-miR-224* mir-224/224* -hsa-mir-223 hsa-miR-223-5p mir-223/5p -hsa-mir-223 hsa-miR-223-3p mir-223/3p -hsa-mir-223 hsa-miR-223* mir-223/223* -hsa-mir-223 hsa-miR-223 mir-223/223 -hsa-mir-222 hsa-miR-222-5p mir-222/5p -hsa-mir-222 hsa-miR-222-3p mir-222/3p -hsa-mir-222 hsa-miR-222* mir-222/222* -hsa-mir-222 hsa-miR-222 mir-222/222 -hsa-mir-221 hsa-miR-221-5p mir-221/5p -hsa-mir-221 hsa-miR-221-3p mir-221/3p -hsa-mir-221 hsa-miR-221* mir-221/221* -hsa-mir-221 hsa-miR-221 mir-221/221 -hsa-mir-22 hsa-miR-22-5p mir-22/5p -hsa-mir-22 hsa-miR-22-3p mir-22/3p -hsa-mir-22 hsa-miR-22* mir-22/22* -hsa-mir-22 hsa-miR-22 mir-22/22 -hsa-mir-219b hsa-miR-219b-5p mir-219b/5p -hsa-mir-2276 hsa-miR-2276 mir-2276/2276 -hsa-mir-219b hsa-miR-219b-3p mir-219b/3p -hsa-mir-219a-2 hsa-miR-219a-5p mir-219a-2/5p -hsa-mir-2278 hsa-miR-2278 mir-2278/2278 -hsa-mir-219a-2 hsa-miR-219a-2-3p mir-219a-2/3p -hsa-mir-219a-1 hsa-miR-219a-5p mir-219a-1/5p -hsa-mir-2392 hsa-miR-2392 mir-2392/2392 -hsa-mir-219a-1 hsa-miR-219 mir-219a-1/219 -hsa-mir-219a-1 hsa-miR-219a-1-3p mir-219a-1/3p -hsa-mir-219-2 hsa-miR-219-2-3p mir-219-2/3p -hsa-mir-219-2 hsa-miR-219-5p mir-219-2/5p -hsa-mir-23c hsa-miR-23c mir-23c/23c -hsa-mir-219-1 hsa-miR-219-5p mir-219-1/5p -hsa-mir-219-1 hsa-miR-219-1-3p mir-219-1/3p -hsa-mir-219 hsa-miR-219a-5p mir-219/5p -hsa-mir-219 hsa-miR-219 mir-219/219 -hsa-mir-219 hsa-miR-219a-1-3p mir-219/3p -hsa-mir-218-2 hsa-miR-218-5p mir-218-2/5p -hsa-mir-218-2 hsa-miR-218-2-3p mir-218-2/3p -hsa-mir-218-2 hsa-miR-218-2* mir-218-2/2* -hsa-mir-218-2 hsa-miR-218 mir-218-2/218 -hsa-mir-218-1 hsa-miR-218-5p mir-218-1/5p -hsa-mir-218-1 hsa-miR-218-1-3p mir-218-1/3p -hsa-mir-218-1 hsa-miR-218 mir-218-1/218 -hsa-mir-218-1 hsa-miR-218-1* mir-218-1/1* -hsa-mir-217 hsa-miR-217-5p mir-217/5p -hsa-mir-217 hsa-miR-217-3p mir-217/3p -hsa-mir-217 hsa-miR-217 mir-217/217 -hsa-mir-216b hsa-miR-216b-5p mir-216b/5p -hsa-mir-216b hsa-miR-216b-3p mir-216b/3p -hsa-mir-216b hsa-miR-216b mir-216b/216b -hsa-mir-216a hsa-miR-216a-5p mir-216a/5p -hsa-mir-216a hsa-miR-216 mir-216a/216 -hsa-mir-216a hsa-miR-216a-3p mir-216a/3p -hsa-mir-216a hsa-miR-216a mir-216a/216a -hsa-mir-216 hsa-miR-216a-5p mir-216/5p -hsa-mir-2861 hsa-miR-2861 mir-2861/2861 -hsa-mir-2909 hsa-miR-2909 mir-2909/2909 -hsa-mir-216 hsa-miR-216 mir-216/216 -hsa-mir-216 hsa-miR-216a mir-216/216a -hsa-mir-216 hsa-miR-216a-3p mir-216/3p -hsa-mir-215 hsa-miR-215-5p mir-215/5p -hsa-mir-297 hsa-miR-297 mir-297/297 -hsa-mir-298 hsa-miR-298 mir-298/298 -hsa-mir-215 hsa-miR-215-3p mir-215/3p -hsa-mir-215 hsa-miR-215 mir-215/215 -hsa-mir-214 hsa-miR-214-5p mir-214/5p -hsa-mir-214 hsa-miR-214-3p mir-214/3p -hsa-mir-214 hsa-miR-214* mir-214/214* -hsa-mir-214 hsa-miR-214 mir-214/214 -hsa-mir-213 hsa-miR-181a-5p mir-213/5p -hsa-mir-213 hsa-miR-181a mir-213/181a -hsa-mir-213 hsa-miR-181a-3p mir-213/3p -hsa-mir-213 hsa-miR-213 mir-213/213 -hsa-mir-300 hsa-miR-300 mir-300/300 -hsa-mir-212 hsa-miR-212-5p mir-212/5p -hsa-mir-212 hsa-miR-212-3p mir-212/3p -hsa-mir-212 hsa-miR-212 mir-212/212 -hsa-mir-2116 hsa-miR-2116 mir-2116/2116 -hsa-mir-2116 hsa-miR-2116* mir-2116/2116* -hsa-mir-2115 hsa-miR-2115 mir-2115/2115 -hsa-mir-2115 hsa-miR-2115* mir-2115/2115* -hsa-mir-2114 hsa-miR-2114 mir-2114/2114 -hsa-mir-2114 hsa-miR-2114* mir-2114/2114* -hsa-mir-210 hsa-miR-210-5p mir-210/5p -hsa-mir-302e hsa-miR-302e mir-302e/302e -hsa-mir-302f hsa-miR-302f mir-302f/302f -hsa-mir-210 hsa-miR-210-3p mir-210/3p -hsa-mir-210 hsa-miR-210 mir-210/210 -hsa-mir-21 hsa-miR-21 mir-21/21 -hsa-mir-21 hsa-miR-21* mir-21/21* -hsa-mir-20b hsa-miR-20b-5p mir-20b/5p -hsa-mir-20b hsa-miR-20b-3p mir-20b/3p -hsa-mir-20b hsa-miR-20b mir-20b/20b -hsa-mir-20b hsa-miR-20b* mir-20b/20b* -hsa-mir-20a hsa-miR-20a-5p mir-20a/5p -hsa-mir-20a hsa-miR-20 mir-20a/20 -hsa-mir-20a hsa-miR-20a mir-20a/20a -hsa-mir-20a hsa-miR-20a* mir-20a/20a* -hsa-mir-208b hsa-miR-208b-5p mir-208b/5p -hsa-mir-208b hsa-miR-208b-3p mir-208b/3p -hsa-mir-208b hsa-miR-208b mir-208b/208b -hsa-mir-208a hsa-miR-208 mir-208a/208 -hsa-mir-208a hsa-miR-208a-5p mir-208a/5p -hsa-mir-208a hsa-miR-208a-3p mir-208a/3p -hsa-mir-208a hsa-miR-208a mir-208a/208a -hsa-mir-208 hsa-miR-208 mir-208/208 -hsa-mir-3115 hsa-miR-3115 mir-3115/3115 -hsa-mir-3116-1 hsa-miR-3116 mir-3116-1/3116 -hsa-mir-3116-2 hsa-miR-3116 mir-3116-2/3116 -hsa-mir-208 hsa-miR-208a-5p mir-208/5p -hsa-mir-208 hsa-miR-208a-3p mir-208/3p -hsa-mir-3118-1 hsa-miR-3118 mir-3118-1/3118 -hsa-mir-3118-2 hsa-miR-3118 mir-3118-2/3118 -hsa-mir-3118-3 hsa-miR-3118 mir-3118-3/3118 -hsa-mir-3118-4 hsa-miR-3118 mir-3118-4/3118 -hsa-mir-3118-5 hsa-miR-3118 mir-3118-5/3118 -hsa-mir-3118-6 hsa-miR-3118 mir-3118-6/3118 -hsa-mir-3119-1 hsa-miR-3119 mir-3119-1/3119 -hsa-mir-3119-2 hsa-miR-3119 mir-3119-2/3119 -hsa-mir-205 hsa-miR-205-5p mir-205/5p -hsa-mir-205 hsa-miR-205-3p mir-205/3p -hsa-mir-205 hsa-miR-205 mir-205/205 -hsa-mir-205 hsa-miR-205* mir-205/205* -hsa-mir-3122 hsa-miR-3122 mir-3122/3122 -hsa-mir-3123 hsa-miR-3123 mir-3123/3123 -hsa-mir-204 hsa-miR-204-5p mir-204/5p -hsa-mir-204 hsa-miR-204-3p mir-204/3p -hsa-mir-3125 hsa-miR-3125 mir-3125/3125 -hsa-mir-204 hsa-miR-204 mir-204/204 -hsa-mir-203b hsa-miR-203b-5p mir-203b/5p -hsa-mir-203b hsa-miR-3545-5p mir-203b/5p -hsa-mir-203b hsa-miR-203b-3p mir-203b/3p -hsa-mir-3128 hsa-miR-3128 mir-3128/3128 -hsa-mir-203b hsa-miR-3545-3p mir-203b/3p -hsa-mir-203a hsa-miR-203a-5p mir-203a/5p -hsa-mir-203a hsa-miR-203a-3p mir-203a/3p -hsa-mir-203a hsa-miR-203a mir-203a/203a -hsa-mir-203 hsa-miR-203a mir-203/203a -hsa-mir-203 hsa-miR-203a-3p mir-203/3p -hsa-mir-3131 hsa-miR-3131 mir-3131/3131 -hsa-mir-3132 hsa-miR-3132 mir-3132/3132 -hsa-mir-3133 hsa-miR-3133 mir-3133/3133 -hsa-mir-3134 hsa-miR-3134 mir-3134/3134 -hsa-mir-203 hsa-miR-203a-5p mir-203/5p -hsa-mir-3135b hsa-miR-3135b mir-3135b/3135b -hsa-mir-203 hsa-miR-203 mir-203/203 -hsa-mir-202 hsa-miR-202-5p mir-202/5p -hsa-mir-3137 hsa-miR-3137 mir-3137/3137 -hsa-mir-3138 hsa-miR-3138 mir-3138/3138 -hsa-mir-3139 hsa-miR-3139 mir-3139/3139 -hsa-mir-202 hsa-miR-202-3p mir-202/3p -hsa-mir-202 hsa-miR-202* mir-202/202* -hsa-mir-3141 hsa-miR-3141 mir-3141/3141 -hsa-mir-3142 hsa-miR-3142 mir-3142/3142 -hsa-mir-3143 hsa-miR-3143 mir-3143/3143 -hsa-mir-202 hsa-miR-202 mir-202/202 -hsa-mir-200c hsa-miR-200c-5p mir-200c/5p -hsa-mir-200c hsa-miR-200c-3p mir-200c/3p -hsa-mir-200c hsa-miR-200c* mir-200c/200c* -hsa-mir-3146 hsa-miR-3146 mir-3146/3146 -hsa-mir-3147 hsa-miR-3147 mir-3147/3147 -hsa-mir-3148 hsa-miR-3148 mir-3148/3148 -hsa-mir-3149 hsa-miR-3149 mir-3149/3149 -hsa-mir-200c hsa-miR-200c mir-200c/200c -hsa-mir-200b hsa-miR-200b-5p mir-200b/5p -hsa-mir-200b hsa-miR-200b-3p mir-200b/3p -hsa-mir-200b hsa-miR-200b* mir-200b/200b* -hsa-mir-200b hsa-miR-200b mir-200b/200b -hsa-mir-200a hsa-miR-200a-5p mir-200a/5p -hsa-mir-200a hsa-miR-200a-3p mir-200a/3p -hsa-mir-3153 hsa-miR-3153 mir-3153/3153 -hsa-mir-3154 hsa-miR-3154 mir-3154/3154 -hsa-mir-200a hsa-miR-200a* mir-200a/200a* -hsa-mir-3155b hsa-miR-3155b mir-3155b/3155b -hsa-mir-200a hsa-miR-200a mir-200a/200a -hsa-mir-20 hsa-miR-20a-5p mir-20/5p -hsa-mir-20 hsa-miR-20 mir-20/20 -hsa-mir-20 hsa-miR-20a mir-20/20a -hsa-mir-20 hsa-miR-20a-3p mir-20/3p -hsa-mir-1d hsa-miR-1-3p mir-1d/3p -hsa-mir-1d hsa-miR-1 mir-1d/1 -hsa-mir-1b hsa-miR-1-3p mir-1b/3p -hsa-mir-1b hsa-miR-1-5p mir-1b/5p -hsa-mir-19b-2 hsa-miR-19b-2-5p mir-19b-2/5p -hsa-mir-3159 hsa-miR-3159 mir-3159/3159 -hsa-mir-19b-2 hsa-miR-19b-3p mir-19b-2/3p -hsa-mir-19b-2 hsa-miR-19b-2* mir-19b-2/2* -hsa-mir-19b-2 hsa-miR-19b mir-19b-2/19b -hsa-mir-19b-1 hsa-miR-19b-1-5p mir-19b-1/5p -hsa-mir-3161 hsa-miR-3161 mir-3161/3161 -hsa-mir-19b-1 hsa-miR-19b-3p mir-19b-1/3p -hsa-mir-19b-1 hsa-miR-19b-1* mir-19b-1/1* -hsa-mir-3163 hsa-miR-3163 mir-3163/3163 -hsa-mir-3164 hsa-miR-3164 mir-3164/3164 -hsa-mir-3165 hsa-miR-3165 mir-3165/3165 -hsa-mir-3166 hsa-miR-3166 mir-3166/3166 -hsa-mir-3167 hsa-miR-3167 mir-3167/3167 -hsa-mir-3168 hsa-miR-3168 mir-3168/3168 -hsa-mir-3169 hsa-miR-3169 mir-3169/3169 -hsa-mir-3170 hsa-miR-3170 mir-3170/3170 -hsa-mir-3171 hsa-miR-3171 mir-3171/3171 -hsa-mir-19b-1 hsa-miR-19b mir-19b-1/19b -hsa-mir-19a hsa-miR-19a-5p mir-19a/5p -hsa-mir-3174 hsa-miR-3174 mir-3174/3174 -hsa-mir-3175 hsa-miR-3175 mir-3175/3175 -hsa-mir-3176 hsa-miR-3176 mir-3176/3176 -hsa-mir-19a hsa-miR-19a-3p mir-19a/3p -hsa-mir-19a hsa-miR-19a* mir-19a/19a* -hsa-mir-3178 hsa-miR-3178 mir-3178/3178 -hsa-mir-3179-1 hsa-miR-3179 mir-3179-1/3179 -hsa-mir-3179-2 hsa-miR-3179 mir-3179-2/3179 -hsa-mir-3179-3 hsa-miR-3179 mir-3179-3/3179 -hsa-mir-19a hsa-miR-19a mir-19a/19a -hsa-mir-199b hsa-miR-199b-5p mir-199b/5p -hsa-mir-199b hsa-miR-199b mir-199b/199b -hsa-mir-199b hsa-miR-199b-3p mir-199b/3p -hsa-mir-3180-4 hsa-miR-3180 mir-3180-4/3180 -hsa-mir-3180-5 hsa-miR-3180 mir-3180-5/3180 -hsa-mir-3181 hsa-miR-3181 mir-3181/3181 -hsa-mir-3182 hsa-miR-3182 mir-3182/3182 -hsa-mir-3183 hsa-miR-3183 mir-3183/3183 -hsa-mir-199a-2 hsa-miR-199a-5p mir-199a-2/5p -hsa-mir-3185 hsa-miR-3185 mir-3185/3185 -hsa-mir-199a-2 hsa-miR-199a mir-199a-2/199a -hsa-mir-199a-2 hsa-miR-199a-3p mir-199a-2/3p -hsa-mir-3188 hsa-miR-3188 mir-3188/3188 -hsa-mir-199a-1 hsa-miR-199a-5p mir-199a-1/5p -hsa-mir-199a-1 hsa-miR-199a mir-199a-1/199a -hsa-mir-3191 hsa-miR-3191 mir-3191/3191 -hsa-mir-3193 hsa-miR-3193 mir-3193/3193 -hsa-mir-199a-1 hsa-miR-199a-3p mir-199a-1/3p -hsa-mir-199-s hsa-miR-199a-5p mir-199-s/5p -hsa-mir-3195 hsa-miR-3195 mir-3195/3195 -hsa-mir-3196 hsa-miR-3196 mir-3196/3196 -hsa-mir-3197 hsa-miR-3197 mir-3197/3197 -hsa-mir-3198-1 hsa-miR-3198 mir-3198-1/3198 -hsa-mir-3198-2 hsa-miR-3198 mir-3198-2/3198 -hsa-mir-3199-1 hsa-miR-3199 mir-3199-1/3199 -hsa-mir-3199-2 hsa-miR-3199 mir-3199-2/3199 -hsa-mir-199-s hsa-miR-199a mir-199-s/199a -hsa-mir-199-s hsa-miR-199a-3p mir-199-s/3p -hsa-mir-196b hsa-miR-196b-5p mir-196b/5p -hsa-mir-196b hsa-miR-196b-3p mir-196b/3p -hsa-mir-3201 hsa-miR-3201 mir-3201/3201 -hsa-mir-3202-1 hsa-miR-3202 mir-3202-1/3202 -hsa-mir-3202-2 hsa-miR-3202 mir-3202-2/3202 -hsa-mir-196b hsa-miR-196b mir-196b/196b -hsa-mir-320b-1 hsa-miR-320b mir-320b-1/320b -hsa-mir-320b-2 hsa-miR-320b mir-320b-2/320b -hsa-mir-320c-1 hsa-miR-320c mir-320c-1/320c -hsa-mir-320c-2 hsa-miR-320c mir-320c-2/320c -hsa-mir-320d-1 hsa-miR-320d mir-320d-1/320d -hsa-mir-320d-2 hsa-miR-320d mir-320d-2/320d -hsa-mir-320e hsa-miR-320e mir-320e/320e -hsa-mir-196b hsa-miR-196b* mir-196b/196b* -hsa-mir-196a-2 hsa-miR-196a-5p mir-196a-2/5p -hsa-mir-196a-2 hsa-miR-196a-3p mir-196a-2/3p -hsa-mir-196a-2 hsa-miR-196a* mir-196a-2/196a* -hsa-mir-196a-2 hsa-miR-196a mir-196a-2/196a -hsa-mir-196-2 hsa-miR-196a-5p mir-196-2/5p -hsa-mir-325 hsa-miR-325 mir-325/325 -hsa-mir-326 hsa-miR-326 mir-326/326 -hsa-mir-196-2 hsa-miR-196a mir-196-2/196a -hsa-mir-196-2 hsa-miR-196a-3p mir-196-2/3p -hsa-mir-196-1 hsa-miR-196a-5p mir-196-1/5p -hsa-mir-196-1 hsa-miR-196a mir-196-1/196a -hsa-mir-196-1 hsa-miR-196a-1-3p mir-196-1/3p -hsa-mir-196 hsa-miR-196a-5p mir-196/5p -hsa-mir-196 hsa-miR-196a mir-196/196a -hsa-mir-196 hsa-miR-196a-1-3p mir-196/3p -hsa-mir-195 hsa-miR-195-5p mir-195/5p -hsa-mir-195 hsa-miR-195-3p mir-195/3p -hsa-mir-195 hsa-miR-195 mir-195/195 -hsa-mir-195 hsa-miR-195* mir-195/195* -hsa-mir-194-2 hsa-miR-194-5p mir-194-2/5p -hsa-mir-194-2 hsa-miR-194-3p mir-194-2/3p -hsa-mir-194-2 hsa-miR-194* mir-194-2/194* -hsa-mir-194-2 hsa-miR-194 mir-194-2/194 -hsa-mir-194-1 hsa-miR-194-5p mir-194-1/5p -hsa-mir-194-1 hsa-miR-194 mir-194-1/194 -hsa-mir-194 hsa-miR-194-5p mir-194/5p -hsa-mir-194 hsa-miR-194 mir-194/194 -hsa-mir-193b hsa-miR-193b-5p mir-193b/5p -hsa-mir-193b hsa-miR-193b-3p mir-193b/3p -hsa-mir-193b hsa-miR-193b* mir-193b/193b* -hsa-mir-193b hsa-miR-193b mir-193b/193b -hsa-mir-346 hsa-miR-346 mir-346/346 -hsa-mir-193a hsa-miR-193a-5p mir-193a/5p -hsa-mir-193a hsa-miR-193a-3p mir-193a/3p -hsa-mir-193 hsa-miR-193a-5p mir-193/5p -hsa-mir-193 hsa-miR-193a-3p mir-193/3p -hsa-mir-193 hsa-miR-193 mir-193/193 -hsa-mir-193 hsa-miR-193a mir-193/193a -hsa-mir-192 hsa-miR-192-5p mir-192/5p -hsa-mir-192 hsa-miR-192-3p mir-192/3p -hsa-mir-192 hsa-miR-192 mir-192/192 -hsa-mir-192 hsa-miR-192* mir-192/192* -hsa-mir-1915 hsa-miR-1915-5p mir-1915/5p -hsa-mir-1915 hsa-miR-1915-3p mir-1915/3p -hsa-mir-1915 hsa-miR-1915* mir-1915/1915* -hsa-mir-1915 hsa-miR-1915 mir-1915/1915 -hsa-mir-3609 hsa-miR-3609 mir-3609/3609 -hsa-mir-1914 hsa-miR-1914-5p mir-1914/5p -hsa-mir-1914 hsa-miR-1914-3p mir-1914/3p -hsa-mir-3610 hsa-miR-3610 mir-3610/3610 -hsa-mir-3611 hsa-miR-3611 mir-3611/3611 -hsa-mir-3612 hsa-miR-3612 mir-3612/3612 -hsa-mir-1914 hsa-miR-1914 mir-1914/1914 -hsa-mir-1914 hsa-miR-1914* mir-1914/1914* -hsa-mir-1912 hsa-miR-1912-5p mir-1912/5p -hsa-mir-1912 hsa-miR-1912-3p mir-1912/3p -hsa-mir-3615 hsa-miR-3615 mir-3615/3615 -hsa-mir-1912 hsa-miR-1912 mir-1912/1912 -hsa-mir-1911 hsa-miR-1911-5p mir-1911/5p -hsa-mir-1911 hsa-miR-1911-3p mir-1911/3p -hsa-mir-3618 hsa-miR-3618 mir-3618/3618 -hsa-mir-1911 hsa-miR-1911 mir-1911/1911 -hsa-mir-1911 hsa-miR-1911* mir-1911/1911* -hsa-mir-1910 hsa-miR-1910-5p mir-1910/5p -hsa-mir-1910 hsa-miR-1910-3p mir-1910/3p -hsa-mir-1910 hsa-miR-1910 mir-1910/1910 -hsa-mir-3621 hsa-miR-3621 mir-3621/3621 -hsa-mir-191 hsa-miR-191-5p mir-191/5p -hsa-mir-191 hsa-miR-191-3p mir-191/3p -hsa-mir-191 hsa-miR-191 mir-191/191 -hsa-mir-191 hsa-miR-191* mir-191/191* -hsa-mir-190b hsa-miR-190b-5p mir-190b/5p -hsa-mir-190b hsa-miR-190b-3p mir-190b/3p -hsa-mir-3646 hsa-miR-3646 mir-3646/3646 -hsa-mir-190b hsa-miR-190b mir-190b/190b -hsa-mir-190a hsa-miR-190a-5p mir-190a/5p -hsa-mir-3648 hsa-miR-3648 mir-3648/3648 -hsa-mir-3649 hsa-miR-3649 mir-3649/3649 -hsa-mir-365-1 hsa-miR-365 mir-365-1/365 -hsa-mir-190a hsa-miR-190 mir-190a/190 -hsa-mir-190a hsa-miR-190a-3p mir-190a/3p -hsa-mir-3650 hsa-miR-3650 mir-3650/3650 -hsa-mir-3651 hsa-miR-3651 mir-3651/3651 -hsa-mir-3652 hsa-miR-3652 mir-3652/3652 -hsa-mir-1909 hsa-miR-1909-5p mir-1909/5p -hsa-mir-3654 hsa-miR-3654 mir-3654/3654 -hsa-mir-3655 hsa-miR-3655 mir-3655/3655 -hsa-mir-3656 hsa-miR-3656 mir-3656/3656 -hsa-mir-3657 hsa-miR-3657 mir-3657/3657 -hsa-mir-3658 hsa-miR-3658 mir-3658/3658 -hsa-mir-3659 hsa-miR-3659 mir-3659/3659 -hsa-mir-3660 hsa-miR-3660 mir-3660/3660 -hsa-mir-3661 hsa-miR-3661 mir-3661/3661 -hsa-mir-3662 hsa-miR-3662 mir-3662/3662 -hsa-mir-1909 hsa-miR-1909-3p mir-1909/3p -hsa-mir-1909 hsa-miR-1909* mir-1909/1909* -hsa-mir-1909 hsa-miR-1909 mir-1909/1909 -hsa-mir-1908 hsa-miR-1908-5p mir-1908/5p -hsa-mir-3665 hsa-miR-3665 mir-3665/3665 -hsa-mir-3666 hsa-miR-3666 mir-3666/3666 -hsa-mir-1908 hsa-miR-1908-3p mir-1908/3p -hsa-mir-1908 hsa-miR-1908 mir-1908/1908 -hsa-mir-3668 hsa-miR-3668 mir-3668/3668 -hsa-mir-3669 hsa-miR-3669 mir-3669/3669 -hsa-mir-190 hsa-miR-190a-5p mir-190/5p -hsa-mir-190 hsa-miR-190a-3p mir-190/3p -hsa-mir-3670 hsa-miR-3670 mir-3670/3670 -hsa-mir-3671 hsa-miR-3671 mir-3671/3671 -hsa-mir-3672 hsa-miR-3672 mir-3672/3672 -hsa-mir-3673 hsa-miR-3673 mir-3673/3673 -hsa-mir-3674 hsa-miR-3674 mir-3674/3674 -hsa-mir-190 hsa-miR-190 mir-190/190 -hsa-mir-18b hsa-miR-18b-5p mir-18b/5p -hsa-mir-3676 hsa-miR-3676 mir-3676/3676 -hsa-mir-18b hsa-miR-18b-3p mir-18b/3p -hsa-mir-18b hsa-miR-18b mir-18b/18b -hsa-mir-18b hsa-miR-18b* mir-18b/18b* -hsa-mir-18a hsa-miR-18a-5p mir-18a/5p -hsa-mir-18a hsa-miR-18;hsa-miR-18a mir-18a/18;18a -hsa-mir-18a hsa-miR-18a-3p mir-18a/3p -hsa-mir-18a hsa-miR-18a mir-18a/18a -hsa-mir-18a hsa-miR-18a* mir-18a/18a* -hsa-mir-188 hsa-miR-188-5p mir-188/5p -hsa-mir-188 hsa-miR-188 mir-188/188 -hsa-mir-188 hsa-miR-188-3p mir-188/3p -hsa-mir-3683 hsa-miR-3683 mir-3683/3683 -hsa-mir-3684 hsa-miR-3684 mir-3684/3684 -hsa-mir-3685 hsa-miR-3685 mir-3685/3685 -hsa-mir-3686 hsa-miR-3686 mir-3686/3686 -hsa-mir-3687 hsa-miR-3687 mir-3687/3687 -hsa-mir-187 hsa-miR-187-5p mir-187/5p -hsa-mir-187 hsa-miR-187-3p mir-187/3p -hsa-mir-187 hsa-miR-187* mir-187/187* -hsa-mir-187 hsa-miR-187 mir-187/187 -hsa-mir-186 hsa-miR-186-5p mir-186/5p -hsa-mir-186 hsa-miR-186-3p mir-186/3p -hsa-mir-186 hsa-miR-186 mir-186/186 -hsa-mir-3689c hsa-miR-3689c mir-3689c/3689c -hsa-mir-3689d-1 hsa-miR-3689d mir-3689d-1/3689d -hsa-mir-3689d-2 hsa-miR-3689d mir-3689d-2/3689d -hsa-mir-3689e hsa-miR-3689e mir-3689e/3689e -hsa-mir-3689f hsa-miR-3689f mir-3689f/3689f -hsa-mir-186 hsa-miR-186* mir-186/186* -hsa-mir-185 hsa-miR-185-5p mir-185/5p -hsa-mir-3690 hsa-miR-3690 mir-3690/3690 -hsa-mir-185 hsa-miR-185-3p mir-185/3p -hsa-mir-185 hsa-miR-185 mir-185/185 -hsa-mir-185 hsa-miR-185* mir-185/185* -hsa-mir-183 hsa-miR-183-5p mir-183/5p -hsa-mir-183 hsa-miR-183-3p mir-183/3p -hsa-mir-183 hsa-miR-183 mir-183/183 -hsa-mir-183 hsa-miR-183* mir-183/183* -hsa-mir-3713 hsa-miR-3713 mir-3713/3713 -hsa-mir-3714 hsa-miR-3714 mir-3714/3714 -hsa-mir-182-as hsa-miR-182-3p mir-182-as/3p -hsa-mir-182-as hsa-miR-182-5p mir-182-as/5p -hsa-mir-182-as hsa-miR-182 mir-182-as/182 -hsa-mir-182 hsa-miR-182-3p mir-182/3p -hsa-mir-182 hsa-miR-182-5p mir-182/5p -hsa-mir-182 hsa-miR-182 mir-182/182 -hsa-mir-182 hsa-miR-182* mir-182/182* -hsa-mir-181d hsa-miR-181d-5p mir-181d/5p -hsa-mir-181d hsa-miR-181d-3p mir-181d/3p -hsa-mir-181d hsa-miR-181d mir-181d/181d -hsa-mir-181c hsa-miR-181c-5p mir-181c/5p -hsa-mir-181c hsa-miR-181c-3p mir-181c/3p -hsa-mir-181c hsa-miR-181c mir-181c/181c -hsa-mir-181c hsa-miR-181c* mir-181c/181c* -hsa-mir-181b-2 hsa-miR-181b-5p mir-181b-2/5p -hsa-mir-181b-2 hsa-miR-181b-2-3p mir-181b-2/3p -hsa-mir-181b-2 hsa-miR-181b mir-181b-2/181b -hsa-mir-181a-2 hsa-miR-181a-5p mir-181a-2/5p -hsa-mir-181a-2 hsa-miR-181a-2-3p mir-181a-2/3p -hsa-mir-181a-2 hsa-miR-181a mir-181a-2/181a -hsa-mir-378b hsa-miR-378b mir-378b/378b -hsa-mir-378c hsa-miR-378c mir-378c/378c -hsa-mir-378d-1 hsa-miR-378d mir-378d-1/378d -hsa-mir-378d-2 hsa-miR-378d mir-378d-2/378d -hsa-mir-378e hsa-miR-378e mir-378e/378e -hsa-mir-378f hsa-miR-378f mir-378f/378f -hsa-mir-378g hsa-miR-378g mir-378g/378g -hsa-mir-378h hsa-miR-378h mir-378h/378h -hsa-mir-378i hsa-miR-378i mir-378i/378i -hsa-mir-181a-2 hsa-miR-181a-2* mir-181a-2/2* -hsa-mir-181a-1 hsa-miR-181a-5p mir-181a-1/5p -hsa-mir-181a-1 hsa-miR-181a-3p mir-181a-1/3p -hsa-mir-181a-1 hsa-miR-213 mir-181a-1/213 -hsa-mir-181a-1 hsa-miR-181a* mir-181a-1/181a* -hsa-mir-181a-1 hsa-miR-181a mir-181a-1/181a -hsa-mir-18 hsa-miR-18a-5p mir-18/5p -hsa-mir-384 hsa-miR-384 mir-384/384 -hsa-mir-3907 hsa-miR-3907 mir-3907/3907 -hsa-mir-3908 hsa-miR-3908 mir-3908/3908 -hsa-mir-3909 hsa-miR-3909 mir-3909/3909 -hsa-mir-3910-1 hsa-miR-3910 mir-3910-1/3910 -hsa-mir-3910-2 hsa-miR-3910 mir-3910-2/3910 -hsa-mir-3911 hsa-miR-3911 mir-3911/3911 -hsa-mir-18 hsa-miR-18;hsa-miR-18a mir-18/18;18a -hsa-mir-18 hsa-miR-18a-3p mir-18/3p -hsa-mir-17 hsa-miR-17 mir-17/17 -hsa-mir-17 hsa-miR-17* mir-17/17* -hsa-mir-3914-1 hsa-miR-3914 mir-3914-1/3914 -hsa-mir-3914-2 hsa-miR-3914 mir-3914-2/3914 -hsa-mir-3915 hsa-miR-3915 mir-3915/3915 -hsa-mir-3916 hsa-miR-3916 mir-3916/3916 -hsa-mir-3917 hsa-miR-3917 mir-3917/3917 -hsa-mir-3918 hsa-miR-3918 mir-3918/3918 -hsa-mir-3919 hsa-miR-3919 mir-3919/3919 -hsa-mir-3920 hsa-miR-3920 mir-3920/3920 -hsa-mir-3921 hsa-miR-3921 mir-3921/3921 -hsa-mir-16-2 hsa-miR-16-2* mir-16-2/2* -hsa-mir-16-2 hsa-miR-16 mir-16-2/16 -hsa-mir-3923 hsa-miR-3923 mir-3923/3923 -hsa-mir-3924 hsa-miR-3924 mir-3924/3924 -hsa-mir-16-13 hsa-miR-16-5p mir-16-13/5p -hsa-mir-16-13 hsa-miR-16 mir-16-13/16 -hsa-mir-3926-1 hsa-miR-3926 mir-3926-1/3926 -hsa-mir-3926-2 hsa-miR-3926 mir-3926-2/3926 -hsa-mir-16-13 hsa-miR-16-1-3p mir-16-13/3p -hsa-mir-16-1 hsa-miR-16-5p mir-16-1/5p -hsa-mir-3929 hsa-miR-3929 mir-3929/3929 -hsa-mir-16-1 hsa-miR-16-1-3p mir-16-1/3p -hsa-mir-3935 hsa-miR-3935 mir-3935/3935 -hsa-mir-3936 hsa-miR-3936 mir-3936/3936 -hsa-mir-3937 hsa-miR-3937 mir-3937/3937 -hsa-mir-3938 hsa-miR-3938 mir-3938/3938 -hsa-mir-3939 hsa-miR-3939 mir-3939/3939 -hsa-mir-16-1 hsa-miR-16 mir-16-1/16 -hsa-mir-16-1 hsa-miR-16-1* mir-16-1/1* -hsa-mir-3941 hsa-miR-3941 mir-3941/3941 -hsa-mir-16 hsa-miR-16-5p mir-16/5p -hsa-mir-16 hsa-miR-16 mir-16/16 -hsa-mir-3943 hsa-miR-3943 mir-3943/3943 -hsa-mir-16 hsa-miR-16-1-3p mir-16/3p -hsa-mir-15b hsa-miR-15b-5p mir-15b/5p -hsa-mir-3945 hsa-miR-3945 mir-3945/3945 -hsa-mir-3960 hsa-miR-3960 mir-3960/3960 -hsa-mir-3972 hsa-miR-3972 mir-3972/3972 -hsa-mir-3973 hsa-miR-3973 mir-3973/3973 -hsa-mir-3974 hsa-miR-3974 mir-3974/3974 -hsa-mir-3975 hsa-miR-3975 mir-3975/3975 -hsa-mir-3976 hsa-miR-3976 mir-3976/3976 -hsa-mir-3977 hsa-miR-3977 mir-3977/3977 -hsa-mir-3978 hsa-miR-3978 mir-3978/3978 -hsa-mir-15b hsa-miR-15b-3p mir-15b/3p -hsa-mir-15b hsa-miR-15b mir-15b/15b -hsa-mir-15b hsa-miR-15b* mir-15b/15b* -hsa-mir-15a hsa-miR-15a-5p mir-15a/5p -hsa-mir-15a hsa-miR-15a-3p mir-15a/3p -hsa-mir-15a hsa-miR-15a mir-15a/15a -hsa-mir-421 hsa-miR-421 mir-421/421 -hsa-mir-422a hsa-miR-422a mir-422a/422a -hsa-mir-15a hsa-miR-15a* mir-15a/15a* -hsa-mir-155 hsa-miR-155-5p mir-155/5p -hsa-mir-155 hsa-miR-155-3p mir-155/3p -hsa-mir-155 hsa-miR-155 mir-155/155 -hsa-mir-155 hsa-miR-155* mir-155/155* -hsa-mir-154 hsa-miR-154-5p mir-154/5p -hsa-mir-4251 hsa-miR-4251 mir-4251/4251 -hsa-mir-4252 hsa-miR-4252 mir-4252/4252 -hsa-mir-4253 hsa-miR-4253 mir-4253/4253 -hsa-mir-4254 hsa-miR-4254 mir-4254/4254 -hsa-mir-4255 hsa-miR-4255 mir-4255/4255 -hsa-mir-4256 hsa-miR-4256 mir-4256/4256 -hsa-mir-4257 hsa-miR-4257 mir-4257/4257 -hsa-mir-4258 hsa-miR-4258 mir-4258/4258 -hsa-mir-4259 hsa-miR-4259 mir-4259/4259 -hsa-mir-4260 hsa-miR-4260 mir-4260/4260 -hsa-mir-4261 hsa-miR-4261 mir-4261/4261 -hsa-mir-4262 hsa-miR-4262 mir-4262/4262 -hsa-mir-4263 hsa-miR-4263 mir-4263/4263 -hsa-mir-4264 hsa-miR-4264 mir-4264/4264 -hsa-mir-4265 hsa-miR-4265 mir-4265/4265 -hsa-mir-4266 hsa-miR-4266 mir-4266/4266 -hsa-mir-4267 hsa-miR-4267 mir-4267/4267 -hsa-mir-4268 hsa-miR-4268 mir-4268/4268 -hsa-mir-4269 hsa-miR-4269 mir-4269/4269 -hsa-mir-4270 hsa-miR-4270 mir-4270/4270 -hsa-mir-4271 hsa-miR-4271 mir-4271/4271 -hsa-mir-4272 hsa-miR-4272 mir-4272/4272 -hsa-mir-4273 hsa-miR-4273 mir-4273/4273 -hsa-mir-4274 hsa-miR-4274 mir-4274/4274 -hsa-mir-4275 hsa-miR-4275 mir-4275/4275 -hsa-mir-4276 hsa-miR-4276 mir-4276/4276 -hsa-mir-4277 hsa-miR-4277 mir-4277/4277 -hsa-mir-4278 hsa-miR-4278 mir-4278/4278 -hsa-mir-4279 hsa-miR-4279 mir-4279/4279 -hsa-mir-4280 hsa-miR-4280 mir-4280/4280 -hsa-mir-4281 hsa-miR-4281 mir-4281/4281 -hsa-mir-4282 hsa-miR-4282 mir-4282/4282 -hsa-mir-4283-1 hsa-miR-4283 mir-4283-1/4283 -hsa-mir-4283-2 hsa-miR-4283 mir-4283-2/4283 -hsa-mir-4284 hsa-miR-4284 mir-4284/4284 -hsa-mir-4285 hsa-miR-4285 mir-4285/4285 -hsa-mir-4286 hsa-miR-4286 mir-4286/4286 -hsa-mir-4287 hsa-miR-4287 mir-4287/4287 -hsa-mir-4288 hsa-miR-4288 mir-4288/4288 -hsa-mir-4289 hsa-miR-4289 mir-4289/4289 -hsa-mir-429 hsa-miR-429 mir-429/429 -hsa-mir-4290 hsa-miR-4290 mir-4290/4290 -hsa-mir-4291 hsa-miR-4291 mir-4291/4291 -hsa-mir-4292 hsa-miR-4292 mir-4292/4292 -hsa-mir-4293 hsa-miR-4293 mir-4293/4293 -hsa-mir-4294 hsa-miR-4294 mir-4294/4294 -hsa-mir-4295 hsa-miR-4295 mir-4295/4295 -hsa-mir-4296 hsa-miR-4296 mir-4296/4296 -hsa-mir-4297 hsa-miR-4297 mir-4297/4297 -hsa-mir-4298 hsa-miR-4298 mir-4298/4298 -hsa-mir-4299 hsa-miR-4299 mir-4299/4299 -hsa-mir-4300 hsa-miR-4300 mir-4300/4300 -hsa-mir-4301 hsa-miR-4301 mir-4301/4301 -hsa-mir-4302 hsa-miR-4302 mir-4302/4302 -hsa-mir-4303 hsa-miR-4303 mir-4303/4303 -hsa-mir-4304 hsa-miR-4304 mir-4304/4304 -hsa-mir-4305 hsa-miR-4305 mir-4305/4305 -hsa-mir-4306 hsa-miR-4306 mir-4306/4306 -hsa-mir-4307 hsa-miR-4307 mir-4307/4307 -hsa-mir-4308 hsa-miR-4308 mir-4308/4308 -hsa-mir-4309 hsa-miR-4309 mir-4309/4309 -hsa-mir-154 hsa-miR-154-3p mir-154/3p -hsa-mir-154 hsa-miR-154 mir-154/154 -hsa-mir-4310 hsa-miR-4310 mir-4310/4310 -hsa-mir-4311 hsa-miR-4311 mir-4311/4311 -hsa-mir-4312 hsa-miR-4312 mir-4312/4312 -hsa-mir-4313 hsa-miR-4313 mir-4313/4313 -hsa-mir-4314 hsa-miR-4314 mir-4314/4314 -hsa-mir-4315-1 hsa-miR-4315 mir-4315-1/4315 -hsa-mir-4315-2 hsa-miR-4315 mir-4315-2/4315 -hsa-mir-4316 hsa-miR-4316 mir-4316/4316 -hsa-mir-4317 hsa-miR-4317 mir-4317/4317 -hsa-mir-4318 hsa-miR-4318 mir-4318/4318 -hsa-mir-4319 hsa-miR-4319 mir-4319/4319 -hsa-mir-154 hsa-miR-154* mir-154/154* -hsa-mir-1537 hsa-miR-1537-5p mir-1537/5p -hsa-mir-4320 hsa-miR-4320 mir-4320/4320 -hsa-mir-4321 hsa-miR-4321 mir-4321/4321 -hsa-mir-4322 hsa-miR-4322 mir-4322/4322 -hsa-mir-4323 hsa-miR-4323 mir-4323/4323 -hsa-mir-4324 hsa-miR-4324 mir-4324/4324 -hsa-mir-4325 hsa-miR-4325 mir-4325/4325 -hsa-mir-4326 hsa-miR-4326 mir-4326/4326 -hsa-mir-4327 hsa-miR-4327 mir-4327/4327 -hsa-mir-4328 hsa-miR-4328 mir-4328/4328 -hsa-mir-4329 hsa-miR-4329 mir-4329/4329 -hsa-mir-1537 hsa-miR-1537-3p mir-1537/3p -hsa-mir-4330 hsa-miR-4330 mir-4330/4330 -hsa-mir-4417 hsa-miR-4417 mir-4417/4417 -hsa-mir-4418 hsa-miR-4418 mir-4418/4418 -hsa-mir-4419a hsa-miR-4419a mir-4419a/4419a -hsa-mir-4419b hsa-miR-4419b mir-4419b/4419b -hsa-mir-4420 hsa-miR-4420 mir-4420/4420 -hsa-mir-4421 hsa-miR-4421 mir-4421/4421 -hsa-mir-4422 hsa-miR-4422 mir-4422/4422 -hsa-mir-1537 hsa-miR-1537 mir-1537/1537 -hsa-mir-153-2 hsa-miR-153-5p mir-153-2/5p -hsa-mir-4424 hsa-miR-4424 mir-4424/4424 -hsa-mir-4425 hsa-miR-4425 mir-4425/4425 -hsa-mir-4426 hsa-miR-4426 mir-4426/4426 -hsa-mir-4427 hsa-miR-4427 mir-4427/4427 -hsa-mir-4428 hsa-miR-4428 mir-4428/4428 -hsa-mir-4429 hsa-miR-4429 mir-4429/4429 -hsa-mir-4430 hsa-miR-4430 mir-4430/4430 -hsa-mir-4431 hsa-miR-4431 mir-4431/4431 -hsa-mir-4432 hsa-miR-4432 mir-4432/4432 -hsa-mir-153-2 hsa-miR-153-3p mir-153-2/3p -hsa-mir-4434 hsa-miR-4434 mir-4434/4434 -hsa-mir-4435-1 hsa-miR-4435 mir-4435-1/4435 -hsa-mir-4435-2 hsa-miR-4435 mir-4435-2/4435 -hsa-mir-4436a hsa-miR-4436a mir-4436a/4436a -hsa-mir-153-2 hsa-miR-153 mir-153-2/153 -hsa-mir-153-1 hsa-miR-153-3p mir-153-1/3p -hsa-mir-4437 hsa-miR-4437 mir-4437/4437 -hsa-mir-4438 hsa-miR-4438 mir-4438/4438 -hsa-mir-4439 hsa-miR-4439 mir-4439/4439 -hsa-mir-4440 hsa-miR-4440 mir-4440/4440 -hsa-mir-4441 hsa-miR-4441 mir-4441/4441 -hsa-mir-4442 hsa-miR-4442 mir-4442/4442 -hsa-mir-4443 hsa-miR-4443 mir-4443/4443 -hsa-mir-4444 hsa-miR-4444 mir-4444/4444 -hsa-mir-153-1 hsa-miR-153 mir-153-1/153 -hsa-mir-152 hsa-miR-152-5p mir-152/5p -hsa-mir-152 hsa-miR-152-3p mir-152/3p -hsa-mir-152 hsa-miR-152 mir-152/152 -hsa-mir-4447 hsa-miR-4447 mir-4447/4447 -hsa-mir-4448 hsa-miR-4448 mir-4448/4448 -hsa-mir-4449 hsa-miR-4449 mir-4449/4449 -hsa-mir-4450 hsa-miR-4450 mir-4450/4450 -hsa-mir-4451 hsa-miR-4451 mir-4451/4451 -hsa-mir-4452 hsa-miR-4452 mir-4452/4452 -hsa-mir-4453 hsa-miR-4453 mir-4453/4453 -hsa-mir-4454 hsa-miR-4454 mir-4454/4454 -hsa-mir-4455 hsa-miR-4455 mir-4455/4455 -hsa-mir-4456 hsa-miR-4456 mir-4456/4456 -hsa-mir-4457 hsa-miR-4457 mir-4457/4457 -hsa-mir-4458 hsa-miR-4458 mir-4458/4458 -hsa-mir-4459 hsa-miR-4459 mir-4459/4459 -hsa-mir-4460 hsa-miR-4460 mir-4460/4460 -hsa-mir-4461 hsa-miR-4461 mir-4461/4461 -hsa-mir-4462 hsa-miR-4462 mir-4462/4462 -hsa-mir-4463 hsa-miR-4463 mir-4463/4463 -hsa-mir-4464 hsa-miR-4464 mir-4464/4464 -hsa-mir-4465 hsa-miR-4465 mir-4465/4465 -hsa-mir-4466 hsa-miR-4466 mir-4466/4466 -hsa-mir-4467 hsa-miR-4467 mir-4467/4467 -hsa-mir-4468 hsa-miR-4468 mir-4468/4468 -hsa-mir-4469 hsa-miR-4469 mir-4469/4469 -hsa-mir-4470 hsa-miR-4470 mir-4470/4470 -hsa-mir-4471 hsa-miR-4471 mir-4471/4471 -hsa-mir-4472-1 hsa-miR-4472 mir-4472-1/4472 -hsa-mir-4472-2 hsa-miR-4472 mir-4472-2/4472 -hsa-mir-4473 hsa-miR-4473 mir-4473/4473 -hsa-mir-151a hsa-miR-151a-5p mir-151a/5p -hsa-mir-151a hsa-miR-151-5p mir-151a/5p -hsa-mir-4475 hsa-miR-4475 mir-4475/4475 -hsa-mir-4476 hsa-miR-4476 mir-4476/4476 -hsa-mir-4477a hsa-miR-4477a mir-4477a/4477a -hsa-mir-4477b hsa-miR-4477b mir-4477b/4477b -hsa-mir-4478 hsa-miR-4478 mir-4478/4478 -hsa-mir-4479 hsa-miR-4479 mir-4479/4479 -hsa-mir-448 hsa-miR-448 mir-448/448 -hsa-mir-4480 hsa-miR-4480 mir-4480/4480 -hsa-mir-4481 hsa-miR-4481 mir-4481/4481 -hsa-mir-4482 hsa-miR-4482 mir-4482/4482 -hsa-mir-4483 hsa-miR-4483 mir-4483/4483 -hsa-mir-4484 hsa-miR-4484 mir-4484/4484 -hsa-mir-151a hsa-miR-151a-3p mir-151a/3p -hsa-mir-4486 hsa-miR-4486 mir-4486/4486 -hsa-mir-4487 hsa-miR-4487 mir-4487/4487 -hsa-mir-4488 hsa-miR-4488 mir-4488/4488 -hsa-mir-4489 hsa-miR-4489 mir-4489/4489 -hsa-mir-4490 hsa-miR-4490 mir-4490/4490 -hsa-mir-4491 hsa-miR-4491 mir-4491/4491 -hsa-mir-4492 hsa-miR-4492 mir-4492/4492 -hsa-mir-4493 hsa-miR-4493 mir-4493/4493 -hsa-mir-4494 hsa-miR-4494 mir-4494/4494 -hsa-mir-4495 hsa-miR-4495 mir-4495/4495 -hsa-mir-4496 hsa-miR-4496 mir-4496/4496 -hsa-mir-4497 hsa-miR-4497 mir-4497/4497 -hsa-mir-4498 hsa-miR-4498 mir-4498/4498 -hsa-mir-4499 hsa-miR-4499 mir-4499/4499 -hsa-mir-151a hsa-miR-151 mir-151a/151 -hsa-mir-151a hsa-miR-151-3p mir-151a/3p -hsa-mir-151 hsa-miR-151a-5p mir-151/5p -hsa-mir-151 hsa-miR-151-5p mir-151/5p -hsa-mir-151 hsa-miR-151a-3p mir-151/3p -hsa-mir-4500 hsa-miR-4500 mir-4500/4500 -hsa-mir-4501 hsa-miR-4501 mir-4501/4501 -hsa-mir-4502 hsa-miR-4502 mir-4502/4502 -hsa-mir-4503 hsa-miR-4503 mir-4503/4503 -hsa-mir-4504 hsa-miR-4504 mir-4504/4504 -hsa-mir-4505 hsa-miR-4505 mir-4505/4505 -hsa-mir-4506 hsa-miR-4506 mir-4506/4506 -hsa-mir-4507 hsa-miR-4507 mir-4507/4507 -hsa-mir-4508 hsa-miR-4508 mir-4508/4508 -hsa-mir-4509-1 hsa-miR-4509 mir-4509-1/4509 -hsa-mir-4509-2 hsa-miR-4509 mir-4509-2/4509 -hsa-mir-4509-3 hsa-miR-4509 mir-4509-3/4509 -hsa-mir-151 hsa-miR-151 mir-151/151 -hsa-mir-151 hsa-miR-151-3p mir-151/3p -hsa-mir-150 hsa-miR-150-5p mir-150/5p -hsa-mir-4510 hsa-miR-4510 mir-4510/4510 -hsa-mir-4511 hsa-miR-4511 mir-4511/4511 -hsa-mir-4512 hsa-miR-4512 mir-4512/4512 -hsa-mir-4513 hsa-miR-4513 mir-4513/4513 -hsa-mir-4514 hsa-miR-4514 mir-4514/4514 -hsa-mir-4515 hsa-miR-4515 mir-4515/4515 -hsa-mir-4516 hsa-miR-4516 mir-4516/4516 -hsa-mir-4517 hsa-miR-4517 mir-4517/4517 -hsa-mir-4518 hsa-miR-4518 mir-4518/4518 -hsa-mir-4519 hsa-miR-4519 mir-4519/4519 -hsa-mir-451b hsa-miR-451b mir-451b/451b -hsa-mir-150 hsa-miR-150-3p mir-150/3p -hsa-mir-150 hsa-miR-150 mir-150/150 -hsa-mir-150 hsa-miR-150* mir-150/150* -hsa-mir-15 hsa-miR-15a-5p mir-15/5p -hsa-mir-15 hsa-miR-15a mir-15/15a -hsa-mir-15 hsa-miR-15a-3p mir-15/3p -hsa-mir-4521 hsa-miR-4521 mir-4521/4521 -hsa-mir-4522 hsa-miR-4522 mir-4522/4522 -hsa-mir-4523 hsa-miR-4523 mir-4523/4523 -hsa-mir-149 hsa-miR-149-5p mir-149/5p -hsa-mir-149 hsa-miR-149-3p mir-149/3p -hsa-mir-4525 hsa-miR-4525 mir-4525/4525 -hsa-mir-4526 hsa-miR-4526 mir-4526/4526 -hsa-mir-4527 hsa-miR-4527 mir-4527/4527 -hsa-mir-4528 hsa-miR-4528 mir-4528/4528 -hsa-mir-149 hsa-miR-149 mir-149/149 -hsa-mir-149 hsa-miR-149* mir-149/149* -hsa-mir-4530 hsa-miR-4530 mir-4530/4530 -hsa-mir-4531 hsa-miR-4531 mir-4531/4531 -hsa-mir-4532 hsa-miR-4532 mir-4532/4532 -hsa-mir-4533 hsa-miR-4533 mir-4533/4533 -hsa-mir-4534 hsa-miR-4534 mir-4534/4534 -hsa-mir-4535 hsa-miR-4535 mir-4535/4535 -hsa-mir-148b hsa-miR-148b-5p mir-148b/5p -hsa-mir-4537 hsa-miR-4537 mir-4537/4537 -hsa-mir-4538 hsa-miR-4538 mir-4538/4538 -hsa-mir-4539 hsa-miR-4539 mir-4539/4539 -hsa-mir-148b hsa-miR-148b-3p mir-148b/3p -hsa-mir-148b hsa-miR-148b* mir-148b/148b* -hsa-mir-4540 hsa-miR-4540 mir-4540/4540 -hsa-mir-148b hsa-miR-148b mir-148b/148b -hsa-mir-148a hsa-miR-148 mir-148a/148 -hsa-mir-148a hsa-miR-148a-5p mir-148a/5p -hsa-mir-148a hsa-miR-148a-3p mir-148a/3p -hsa-mir-148a hsa-miR-148a* mir-148a/148a* -hsa-mir-4634 hsa-miR-4634 mir-4634/4634 -hsa-mir-4635 hsa-miR-4635 mir-4635/4635 -hsa-mir-4636 hsa-miR-4636 mir-4636/4636 -hsa-mir-4637 hsa-miR-4637 mir-4637/4637 -hsa-mir-148a hsa-miR-148a mir-148a/148a -hsa-mir-148 hsa-miR-148 mir-148/148 -hsa-mir-148 hsa-miR-148a-5p mir-148/5p -hsa-mir-148 hsa-miR-148a-3p mir-148/3p -hsa-mir-148 hsa-miR-148a mir-148/148a -hsa-mir-147b hsa-miR-147b-5p mir-147b/5p -hsa-mir-147b hsa-miR-147b-3p mir-147b/3p -hsa-mir-4642 hsa-miR-4642 mir-4642/4642 -hsa-mir-4643 hsa-miR-4643 mir-4643/4643 -hsa-mir-4644 hsa-miR-4644 mir-4644/4644 -hsa-mir-147b hsa-miR-147b mir-147b/147b -hsa-mir-147a hsa-miR-147a mir-147a/147a -hsa-mir-147a hsa-miR-147 mir-147a/147 -hsa-mir-147 hsa-miR-147a mir-147/147a -hsa-mir-4647 hsa-miR-4647 mir-4647/4647 -hsa-mir-4648 hsa-miR-4648 mir-4648/4648 -hsa-mir-147 hsa-miR-147 mir-147/147 -hsa-mir-146b hsa-miR-146b-5p mir-146b/5p -hsa-mir-146b hsa-miR-146b mir-146b/146b -hsa-mir-146b hsa-miR-146b-3p mir-146b/3p -hsa-mir-4651 hsa-miR-4651 mir-4651/4651 -hsa-mir-146a hsa-miR-146a-3p mir-146a/3p -hsa-mir-146a hsa-miR-146a-5p mir-146a/5p -hsa-mir-146a hsa-miR-146 mir-146a/146 -hsa-mir-146a hsa-miR-146a mir-146a/146a -hsa-mir-4654 hsa-miR-4654 mir-4654/4654 -hsa-mir-146a hsa-miR-146a* mir-146a/146a* -hsa-mir-146 hsa-miR-146a-3p mir-146/3p -hsa-mir-4656 hsa-miR-4656 mir-4656/4656 -hsa-mir-4657 hsa-miR-4657 mir-4657/4657 -hsa-mir-4658 hsa-miR-4658 mir-4658/4658 -hsa-mir-146 hsa-miR-146a-5p mir-146/5p -hsa-mir-146 hsa-miR-146 mir-146/146 -hsa-mir-146 hsa-miR-146a mir-146/146a -hsa-mir-145 hsa-miR-145-5p mir-145/5p -hsa-mir-466 hsa-miR-466 mir-466/466 -hsa-mir-4660 hsa-miR-4660 mir-4660/4660 -hsa-mir-145 hsa-miR-145-3p mir-145/3p -hsa-mir-145 hsa-miR-145 mir-145/145 -hsa-mir-145 hsa-miR-145* mir-145/145* -hsa-mir-144 hsa-miR-144* mir-144/144* -hsa-mir-4662b hsa-miR-4662b mir-4662b/4662b -hsa-mir-4663 hsa-miR-4663 mir-4663/4663 -hsa-mir-144 hsa-miR-144 mir-144/144 -hsa-mir-143 hsa-miR-143-5p mir-143/5p -hsa-mir-143 hsa-miR-143-3p mir-143/3p -hsa-mir-143 hsa-miR-143* mir-143/143* -hsa-mir-143 hsa-miR-143 mir-143/143 -hsa-mir-142 hsa-miR-142-5p mir-142/5p -hsa-mir-142 hsa-miR-142-3p mir-142/3p -hsa-mir-141 hsa-miR-141-5p mir-141/5p -hsa-mir-4669 hsa-miR-4669 mir-4669/4669 -hsa-mir-141 hsa-miR-141-3p mir-141/3p -hsa-mir-141 hsa-miR-141* mir-141/141* -hsa-mir-141 hsa-miR-141 mir-141/141 -hsa-mir-140 hsa-miR-140-5p mir-140/5p -hsa-mir-4672 hsa-miR-4672 mir-4672/4672 -hsa-mir-4673 hsa-miR-4673 mir-4673/4673 -hsa-mir-4674 hsa-miR-4674 mir-4674/4674 -hsa-mir-4675 hsa-miR-4675 mir-4675/4675 -hsa-mir-140 hsa-miR-140-3p mir-140/3p -hsa-mir-139 hsa-miR-139-5p mir-139/5p -hsa-mir-139 hsa-miR-139 mir-139/139 -hsa-mir-139 hsa-miR-139-3p mir-139/3p -hsa-mir-4678 hsa-miR-4678 mir-4678/4678 -hsa-mir-4679-1 hsa-miR-4679 mir-4679-1/4679 -hsa-mir-4679-2 hsa-miR-4679 mir-4679-2/4679 -hsa-mir-4681 hsa-miR-4681 mir-4681/4681 -hsa-mir-4682 hsa-miR-4682 mir-4682/4682 -hsa-mir-4683 hsa-miR-4683 mir-4683/4683 -hsa-mir-138-2 hsa-miR-138-5p mir-138-2/5p -hsa-mir-138-2 hsa-miR-138-2-3p mir-138-2/3p -hsa-mir-138-2 hsa-miR-138 mir-138-2/138 -hsa-mir-138-2 hsa-miR-138-2* mir-138-2/2* -hsa-mir-4686 hsa-miR-4686 mir-4686/4686 -hsa-mir-138-1 hsa-miR-138-5p mir-138-1/5p -hsa-mir-138-1 hsa-miR-138-1-3p mir-138-1/3p -hsa-mir-4688 hsa-miR-4688 mir-4688/4688 -hsa-mir-4689 hsa-miR-4689 mir-4689/4689 -hsa-mir-138-1 hsa-miR-138-1* mir-138-1/1* -hsa-mir-138-1 hsa-miR-138 mir-138-1/138 -hsa-mir-137 hsa-miR-137-5p mir-137/5p -hsa-mir-137 hsa-miR-137-3p mir-137/3p -hsa-mir-4692 hsa-miR-4692 mir-4692/4692 -hsa-mir-137 hsa-miR-137 mir-137/137 -hsa-mir-136 hsa-miR-136-5p mir-136/5p -hsa-mir-136 hsa-miR-136-3p mir-136/3p -hsa-mir-136 hsa-miR-136 mir-136/136 -hsa-mir-136 hsa-miR-136* mir-136/136* -hsa-mir-135b hsa-miR-135b-5p mir-135b/5p -hsa-mir-4696 hsa-miR-4696 mir-4696/4696 -hsa-mir-135b hsa-miR-135b-3p mir-135b/3p -hsa-mir-135b hsa-miR-135b mir-135b/135b -hsa-mir-4698 hsa-miR-4698 mir-4698/4698 -hsa-mir-135b hsa-miR-135b* mir-135b/135b* -hsa-mir-135a-2 hsa-miR-135a-5p mir-135a-2/5p -hsa-mir-135a-2 hsa-miR-135a-2-3p mir-135a-2/3p -hsa-mir-135a-2 hsa-miR-135a mir-135a-2/135a -hsa-mir-135a-1 hsa-miR-135a-5p mir-135a-1/5p -hsa-mir-135a-1 hsa-miR-135a-3p mir-135a-1/3p -hsa-mir-135a-1 hsa-miR-135a mir-135a-1/135a -hsa-mir-135a-1 hsa-miR-135a* mir-135a-1/135a* -hsa-mir-135-2 hsa-miR-135a-5p mir-135-2/5p -hsa-mir-135-2 hsa-miR-135a mir-135-2/135a -hsa-mir-4705 hsa-miR-4705 mir-4705/4705 -hsa-mir-4706 hsa-miR-4706 mir-4706/4706 -hsa-mir-135-2 hsa-miR-135a-2-3p mir-135-2/3p -hsa-mir-135-1 hsa-miR-135a-5p mir-135-1/5p -hsa-mir-135-1 hsa-miR-135a mir-135-1/135a -hsa-mir-135-1 hsa-miR-135a-3p mir-135-1/3p -hsa-mir-1343 hsa-miR-1343-5p mir-1343/5p -hsa-mir-1343 hsa-miR-1343-3p mir-1343/3p -hsa-mir-4710 hsa-miR-4710 mir-4710/4710 -hsa-mir-1343 hsa-miR-1343 mir-1343/1343 -hsa-mir-134 hsa-miR-134-5p mir-134/5p -hsa-mir-134 hsa-miR-134-3p mir-134/3p -hsa-mir-134 hsa-miR-134 mir-134/134 -hsa-mir-133a-1 hsa-miR-133a-5p mir-133a-1/5p -hsa-mir-133a-1 hsa-miR-133a-3p mir-133a-1/3p -hsa-mir-133a-1 hsa-miR-133a mir-133a-1/133a -hsa-mir-132 hsa-miR-132* mir-132/132* -hsa-mir-132 hsa-miR-132 mir-132/132 -hsa-mir-130b hsa-miR-130b-5p mir-130b/5p -hsa-mir-130b hsa-miR-130b-3p mir-130b/3p -hsa-mir-130b hsa-miR-130b* mir-130b/130b* -hsa-mir-130b hsa-miR-130b mir-130b/130b -hsa-mir-130a hsa-miR-130a-5p mir-130a/5p -hsa-mir-4718 hsa-miR-4718 mir-4718/4718 -hsa-mir-4719 hsa-miR-4719 mir-4719/4719 -hsa-mir-130a hsa-miR-130a-3p mir-130a/3p -hsa-mir-130a hsa-miR-130a* mir-130a/130a* -hsa-mir-4721 hsa-miR-4721 mir-4721/4721 -hsa-mir-130a hsa-miR-130a mir-130a/130a -hsa-mir-1307 hsa-miR-1307-5p mir-1307/5p -hsa-mir-1307 hsa-miR-1307-3p mir-1307/3p -hsa-mir-1307 hsa-miR-1307 mir-1307/1307 -hsa-mir-1306 hsa-miR-1306-5p mir-1306/5p -hsa-mir-1306 hsa-miR-1306-3p mir-1306/3p -hsa-mir-1306 hsa-miR-1306 mir-1306/1306 -hsa-mir-1304 hsa-miR-1304-5p mir-1304/5p -hsa-mir-1304 hsa-miR-1304-3p mir-1304/3p -hsa-mir-1304 hsa-miR-1304 mir-1304/1304 -hsa-mir-1301 hsa-miR-1301-5p mir-1301/5p -hsa-mir-1301 hsa-miR-1301-3p mir-1301/3p -hsa-mir-1301 hsa-miR-1301 mir-1301/1301 -hsa-mir-129b hsa-miR-129-5p mir-129b/5p -hsa-mir-4729 hsa-miR-4729 mir-4729/4729 -hsa-mir-4730 hsa-miR-4730 mir-4730/4730 -hsa-mir-129b hsa-miR-129 mir-129b/129 -hsa-mir-129b hsa-miR-129-2-3p mir-129b/3p -hsa-mir-129b hsa-miR-129-3p mir-129b/3p -hsa-mir-129a hsa-miR-129-5p mir-129a/5p -hsa-mir-129a hsa-miR-129 mir-129a/129 -hsa-mir-129a hsa-miR-129-1-3p mir-129a/3p -hsa-mir-4734 hsa-miR-4734 mir-4734/4734 -hsa-mir-1298 hsa-miR-1298-5p mir-1298/5p -hsa-mir-1298 hsa-miR-1298-3p mir-1298/3p -hsa-mir-4736 hsa-miR-4736 mir-4736/4736 -hsa-mir-4737 hsa-miR-4737 mir-4737/4737 -hsa-mir-1298 hsa-miR-1298 mir-1298/1298 -hsa-mir-1296 hsa-miR-1296-5p mir-1296/5p -hsa-mir-4739 hsa-miR-4739 mir-4739/4739 -hsa-mir-1296 hsa-miR-1296-3p mir-1296/3p -hsa-mir-1296 hsa-miR-1296 mir-1296/1296 -hsa-mir-4741 hsa-miR-4741 mir-4741/4741 -hsa-mir-1295b hsa-miR-1295b-5p mir-1295b/5p -hsa-mir-1295b hsa-miR-1295b-3p mir-1295b/3p -hsa-mir-1295a hsa-miR-1295a mir-1295a/1295a -hsa-mir-4744 hsa-miR-4744 mir-4744/4744 -hsa-mir-1295a hsa-miR-1295 mir-1295a/1295 -hsa-mir-1295 hsa-miR-1295a mir-1295/1295a -hsa-mir-1295 hsa-miR-1295 mir-1295/1295 -hsa-mir-1292 hsa-miR-1292-5p mir-1292/5p -hsa-mir-1292 hsa-miR-1292-3p mir-1292/3p -hsa-mir-1292 hsa-miR-1292 mir-1292/1292 -hsa-mir-4748 hsa-miR-4748 mir-4748/4748 -hsa-mir-129-2 hsa-miR-129-5p mir-129-2/5p -hsa-mir-129-2 hsa-miR-129 mir-129-2/129 -hsa-mir-129-2 hsa-miR-129-2-3p mir-129-2/3p -hsa-mir-4751 hsa-miR-4751 mir-4751/4751 -hsa-mir-4752 hsa-miR-4752 mir-4752/4752 -hsa-mir-129-2 hsa-miR-129-3p mir-129-2/3p -hsa-mir-4754 hsa-miR-4754 mir-4754/4754 -hsa-mir-129-1 hsa-miR-129-5p mir-129-1/5p -hsa-mir-129-1 hsa-miR-129 mir-129-1/129 -hsa-mir-129-1 hsa-miR-129-1-3p mir-129-1/3p -hsa-mir-129-1 hsa-miR-129-5p mir-129-1/5p -hsa-mir-129-1 hsa-miR-129* mir-129-1/129* -hsa-mir-129 hsa-miR-129-5p mir-129/5p -hsa-mir-129 hsa-miR-129 mir-129/129 -hsa-mir-4759 hsa-miR-4759 mir-4759/4759 -hsa-mir-129 hsa-miR-129-1-3p mir-129/3p -hsa-mir-128b hsa-miR-128-2-5p mir-128b/5p -hsa-mir-128b hsa-miR-128-3p mir-128b/3p -hsa-mir-128b hsa-miR-128a mir-128b/128a -hsa-miR-128a hsa-miR-128-1-5p mir-128a/5p -hsa-miR-128a hsa-miR-128a mir-128a/128a -hsa-miR-128a hsa-miR-128-3p mir-128a/3p -hsa-mir-1287 hsa-miR-1287-5p mir-1287/5p -hsa-mir-1287 hsa-miR-1287-3p mir-1287/3p -hsa-mir-1287 hsa-miR-1287 mir-1287/1287 -hsa-mir-4765 hsa-miR-4765 mir-4765/4765 -hsa-mir-1285-2 hsa-miR-1285-3p mir-1285-2/3p -hsa-mir-1285-2 hsa-miR-1285 mir-1285-2/1285 -hsa-mir-4767 hsa-miR-4767 mir-4767/4767 -hsa-mir-1285-1 hsa-miR-1285-5p mir-1285-1/5p -hsa-mir-1285-1 hsa-miR-1285-3p mir-1285-1/3p -hsa-mir-1285-1 hsa-miR-1285 mir-1285-1/1285 -hsa-mir-128-2 hsa-miR-128-2-5p mir-128-2/5p -hsa-mir-4770 hsa-miR-4770 mir-4770/4770 -hsa-mir-4771-1 hsa-miR-4771 mir-4771-1/4771 -hsa-mir-4771-2 hsa-miR-4771 mir-4771-2/4771 -hsa-mir-128-2 hsa-miR-128-3p mir-128-2/3p -hsa-mir-128-2 hsa-miR-128 mir-128-2/128 -hsa-mir-4773-1 hsa-miR-4773 mir-4773-1/4773 -hsa-mir-4773-2 hsa-miR-4773 mir-4773-2/4773 -hsa-mir-128-1 hsa-miR-128-1-5p mir-128-1/5p -hsa-mir-128-1 hsa-miR-128a mir-128-1/128a -hsa-mir-4775 hsa-miR-4775 mir-4775/4775 -hsa-mir-128-1 hsa-miR-128-3p mir-128-1/3p -hsa-mir-128-1 hsa-miR-128 mir-128-1/128 -hsa-mir-1277 hsa-miR-1277-5p mir-1277/5p -hsa-mir-1277 hsa-miR-1277-3p mir-1277/3p -hsa-mir-1277 hsa-miR-1277 mir-1277/1277 -hsa-mir-1273h hsa-miR-1273h-5p mir-1273h/5p -hsa-mir-1273h hsa-miR-1273h-3p mir-1273h/3p -hsa-mir-1273g hsa-miR-1273g-5p mir-1273g/5p -hsa-mir-4779 hsa-miR-4779 mir-4779/4779 -hsa-mir-4780 hsa-miR-4780 mir-4780/4780 -hsa-mir-1273g hsa-miR-1273g-3p mir-1273g/3p -hsa-mir-1273g hsa-miR-1273g mir-1273g/1273g -hsa-mir-1271 hsa-miR-1271-5p mir-1271/5p -hsa-mir-1271 hsa-miR-1271-3p mir-1271/3p -hsa-mir-1271 hsa-miR-1271 mir-1271/1271 -hsa-mir-1270-1 hsa-miR-1270 mir-1270-1/1270 -hsa-mir-4784 hsa-miR-4784 mir-4784/4784 -hsa-mir-4785 hsa-miR-4785 mir-4785/4785 -hsa-mir-1270-1 hsa-miR-1270 mir-1270-1/1270 -hsa-mir-127 hsa-miR-127-5p mir-127/5p -hsa-mir-127 hsa-miR-127-3p mir-127/3p -hsa-mir-1269a hsa-miR-1269a mir-1269a/1269a -hsa-mir-4788 hsa-miR-4788 mir-4788/4788 -hsa-mir-1269a hsa-miR-1269 mir-1269a/1269 -hsa-mir-1269 hsa-miR-1269a mir-1269/1269a -hsa-mir-1269 hsa-miR-1269 mir-1269/1269 -hsa-mir-1268a hsa-miR-1268a mir-1268a/1268a -hsa-mir-4791 hsa-miR-4791 mir-4791/4791 -hsa-mir-4792 hsa-miR-4792 mir-4792/4792 -hsa-mir-1268a hsa-miR-1268 mir-1268a/1268 -hsa-mir-1268 hsa-miR-1268a mir-1268/1268a -hsa-mir-4794 hsa-miR-4794 mir-4794/4794 -hsa-mir-1268 hsa-miR-1268 mir-1268/1268 -hsa-mir-1266 hsa-miR-1266-5p mir-1266/5p -hsa-mir-1266 hsa-miR-1266-3p mir-1266/3p -hsa-mir-1266 hsa-miR-1266 mir-1266/1266 -hsa-mir-1260a hsa-miR-1260a mir-1260a/1260a -hsa-mir-1260a hsa-miR-1260 mir-1260a/1260 -hsa-mir-1260 hsa-miR-1260a mir-1260/1260a -hsa-mir-1260 hsa-miR-1260 mir-1260/1260 -hsa-mir-126 hsa-miR-126-5p mir-126/5p -hsa-mir-126 hsa-miR-126-3p mir-126/3p -hsa-mir-126 hsa-miR-126* mir-126/126* -hsa-mir-126 hsa-miR-126 mir-126/126 -hsa-mir-4801 hsa-miR-4801 mir-4801/4801 -hsa-mir-125b-2 hsa-miR-125b-5p mir-125b-2/5p -hsa-mir-125b-2 hsa-miR-125b-2-3p mir-125b-2/3p -hsa-mir-4803 hsa-miR-4803 mir-4803/4803 -hsa-mir-125b-2 hsa-miR-125b-2* mir-125b-2/2* -hsa-mir-125b-2 hsa-miR-125b mir-125b-2/125b -hsa-mir-125b-1 hsa-miR-125b-5p mir-125b-1/5p -hsa-mir-125b-1 hsa-miR-125b-1-3p mir-125b-1/3p -hsa-mir-484 hsa-miR-484 mir-484/484 -hsa-mir-125b-1 hsa-miR-125b mir-125b-1/125b -hsa-mir-125b-1 hsa-miR-125b-1* mir-125b-1/1* -hsa-mir-125a hsa-miR-125a-5p mir-125a/5p -hsa-mir-125a hsa-miR-125a mir-125a/125a -hsa-mir-125a hsa-miR-125a-3p mir-125a/3p -hsa-mir-1252 hsa-miR-1252-5p mir-1252/5p -hsa-mir-1252 hsa-miR-1252-3p mir-1252/3p -hsa-mir-1252 hsa-miR-1252 mir-1252/1252 -hsa-mir-1250 hsa-miR-1250-5p mir-1250/5p -hsa-mir-1250 hsa-miR-1250-3p mir-1250/3p -hsa-mir-1250 hsa-miR-1250 mir-1250/1250 -hsa-mir-492 hsa-miR-492 mir-492/492 -hsa-mir-124a-3 hsa-miR-124-5p mir-124a-3/5p -hsa-mir-124a-3 hsa-miR-124-3p mir-124a-3/3p -hsa-mir-124a-3 hsa-miR-124a mir-124a-3/124a -hsa-mir-124a-3 hsa-miR-124 mir-124a-3/124 -hsa-mir-496 hsa-miR-496 mir-496/496 -hsa-mir-124a-2 hsa-miR-124-5p mir-124a-2/5p -hsa-mir-124a-2 hsa-miR-124-3p mir-124a-2/3p -hsa-mir-124a-2 hsa-miR-124a mir-124a-2/124a -hsa-mir-124a-2 hsa-miR-124 mir-124a-2/124 -hsa-mir-124a-1 hsa-miR-124-5p mir-124a-1/5p -hsa-mir-124a-1 hsa-miR-124-3p mir-124a-1/3p -hsa-mir-124a-1 hsa-miR-124a mir-124a-1/124a -hsa-mir-124a-1 hsa-miR-124 mir-124a-1/124 -hsa-mir-1249 hsa-miR-1249-5p mir-1249/5p -hsa-mir-1249 hsa-miR-1249-3p mir-1249/3p -hsa-mir-1249 hsa-miR-1249 mir-1249/1249 -hsa-mir-1247 hsa-miR-1247-5p mir-1247/5p -hsa-mir-1247 hsa-miR-1247-3p mir-1247/3p -hsa-mir-1247 hsa-miR-1247 mir-1247/1247 -hsa-mir-1245b hsa-miR-1245b-5p mir-1245b/5p -hsa-mir-1245b hsa-miR-1245b-3p mir-1245b/3p -hsa-mir-5047 hsa-miR-5047 mir-5047/5047 -hsa-mir-1245a hsa-miR-1245a mir-1245a/1245a -hsa-mir-507 hsa-miR-507 mir-507/507 -hsa-mir-1245a hsa-miR-1245 mir-1245a/1245 -hsa-mir-1245 hsa-miR-1245a mir-1245/1245a -hsa-mir-1245 hsa-miR-1245 mir-1245/1245 -hsa-mir-124-3 hsa-miR-124-5p mir-124-3/5p -hsa-mir-124-3 hsa-miR-124-3p mir-124-3/3p -hsa-mir-124-3 hsa-miR-124a mir-124-3/124a -hsa-mir-124-3 hsa-miR-124* mir-124-3/124* -hsa-mir-124-3 hsa-miR-124 mir-124-3/124 -hsa-mir-5095 hsa-miR-5095 mir-5095/5095 -hsa-mir-5096 hsa-miR-5096 mir-5096/5096 -hsa-mir-124-2 hsa-miR-124-5p mir-124-2/5p -hsa-mir-511-1 hsa-miR-511 mir-511-1/511 -hsa-mir-511-2 hsa-miR-511 mir-511-2/511 -hsa-mir-124-2 hsa-miR-124-3p mir-124-2/3p -hsa-mir-124-2 hsa-miR-124a mir-124-2/124a -hsa-mir-124-2 hsa-miR-124* mir-124-2/124* -hsa-mir-124-2 hsa-miR-124 mir-124-2/124 -hsa-mir-124-1 hsa-miR-124-5p mir-124-1/5p -hsa-mir-124-1 hsa-miR-124-3p mir-124-1/3p -hsa-mir-124-1 hsa-miR-124a mir-124-1/124a -hsa-mir-124-1 hsa-miR-124* mir-124-1/124* -hsa-mir-513b hsa-miR-513b mir-513b/513b -hsa-mir-513c hsa-miR-513c mir-513c/513c -hsa-mir-124-1 hsa-miR-124 mir-124-1/124 -hsa-mir-1238 hsa-miR-1238-5p mir-1238/5p -hsa-mir-1238 hsa-miR-1238-3p mir-1238/3p -hsa-mir-1238 hsa-miR-1238 mir-1238/1238 -hsa-mir-1237 hsa-miR-1237-5p mir-1237/5p -hsa-mir-1237 hsa-miR-1237-3p mir-1237/3p -hsa-mir-1237 hsa-miR-1237 mir-1237/1237 -hsa-mir-1236 hsa-miR-1236-5p mir-1236/5p -hsa-mir-1236 hsa-miR-1236-3p mir-1236/3p -hsa-mir-1236 hsa-miR-1236 mir-1236/1236 -hsa-mir-1234 hsa-miR-1234-3p mir-1234/3p -hsa-mir-1234 hsa-miR-1234 mir-1234/1234 -hsa-mir-1233-2 hsa-miR-1233-5p mir-1233-2/5p -hsa-mir-1233-2 hsa-miR-1233-3p mir-1233-2/3p -hsa-mir-1233-2 hsa-miR-1233 mir-1233-2/1233 -hsa-mir-1233-1 hsa-miR-1233-5p mir-1233-1/5p -hsa-mir-1233-1 hsa-miR-1233-3p mir-1233-1/3p -hsa-mir-1233-1 hsa-miR-1233 mir-1233-1/1233 -hsa-mir-1233 hsa-miR-1233-5p mir-1233/5p -hsa-mir-1233 hsa-miR-1233-3p mir-1233/3p -hsa-mir-1233 hsa-miR-1233 mir-1233/1233 -hsa-mir-122b hsa-miR-122b-5p mir-122b/5p -hsa-mir-122b hsa-miR-122b-3p mir-122b/3p -hsa-mir-122a hsa-miR-122-5p mir-122a/5p -hsa-mir-122a hsa-miR-122a mir-122a/122a -hsa-mir-122a hsa-miR-122 mir-122a/122 -hsa-mir-122a hsa-miR-122-3p mir-122a/3p -hsa-mir-518b hsa-miR-518b mir-518b/518b -hsa-mir-1229 hsa-miR-1229-5p mir-1229/5p -hsa-mir-1229 hsa-miR-1229-3p mir-1229/3p -hsa-mir-1229 hsa-miR-1229 mir-1229/1229 -hsa-mir-1228 hsa-miR-1228-5p mir-1228/5p -hsa-mir-1228 hsa-miR-1228-3p mir-1228/3p -hsa-mir-1228 hsa-miR-1228* mir-1228/1228* -hsa-mir-1228 hsa-miR-1228 mir-1228/1228 -hsa-mir-1226 hsa-miR-1226-5p mir-1226/5p -hsa-mir-1226 hsa-miR-1226-3p mir-1226/3p -hsa-mir-1226 hsa-miR-1226* mir-1226/1226* -hsa-mir-1226 hsa-miR-1226 mir-1226/1226 -hsa-mir-1225 hsa-miR-1225-5p mir-1225/5p -hsa-mir-1225 hsa-miR-1225-3p mir-1225/3p -hsa-mir-1224 hsa-miR-1224-5p mir-1224/5p -hsa-mir-1224 hsa-miR-1224-3p mir-1224/3p -hsa-mir-122 hsa-miR-122-5p mir-122/5p -hsa-mir-122 hsa-miR-122a mir-122/122a -hsa-mir-122 hsa-miR-122-3p mir-122/3p -hsa-mir-122 hsa-miR-122 mir-122/122 -hsa-mir-122 hsa-miR-122* mir-122/122* -hsa-mir-1207 hsa-miR-1207-5p mir-1207/5p -hsa-mir-1207 hsa-miR-1207-3p mir-1207/3p -hsa-mir-1199 hsa-miR-1199-5p mir-1199/5p -hsa-mir-1199 hsa-miR-1199-3p mir-1199/3p -hsa-mir-1185-2 hsa-miR-1185-5p mir-1185-2/5p -hsa-mir-1185-2 hsa-miR-1185-2-3p mir-1185-2/3p -hsa-mir-520h hsa-miR-520h mir-520h/520h -hsa-mir-521-1 hsa-miR-521 mir-521-1/521 -hsa-mir-521-2 hsa-miR-521 mir-521-2/521 -hsa-mir-1185-2 hsa-miR-1185 mir-1185-2/1185 -hsa-mir-1185-1 hsa-miR-1185-5p mir-1185-1/5p -hsa-mir-1185-1 hsa-miR-1185-1-3p mir-1185-1/3p -hsa-mir-1185-1 hsa-miR-1185 mir-1185-1/1185 -hsa-mir-1180 hsa-miR-1180-5p mir-1180/5p -hsa-mir-1180 hsa-miR-1180-3p mir-1180/3p -hsa-mir-1180 hsa-miR-1180 mir-1180/1180 -hsa-mir-1178 hsa-miR-1178-5p mir-1178/5p -hsa-mir-1178 hsa-miR-1178-3p mir-1178/3p -hsa-mir-1178 hsa-miR-1178 mir-1178/1178 -hsa-mir-11181 hsa-miR-11181-5p mir-11181/5p -hsa-mir-11181 hsa-miR-11181-3p mir-11181/3p -hsa-mir-527 hsa-miR-527 mir-527/527 -hsa-mir-10b hsa-miR-10b-5p mir-10b/5p -hsa-mir-10b hsa-miR-10b-3p mir-10b/3p -hsa-mir-10b hsa-miR-10b mir-10b/10b -hsa-mir-10b hsa-miR-10b* mir-10b/10b* -hsa-mir-10a hsa-miR-10a-5p mir-10a/5p -hsa-mir-10a hsa-miR-10a-3p mir-10a/3p -hsa-mir-10a hsa-miR-10a mir-10a/10a -hsa-mir-543 hsa-miR-543 mir-543/543 -hsa-mir-10a hsa-miR-10a* mir-10a/10a* -hsa-mir-544b hsa-miR-544b mir-544b/544b -hsa-mir-106b hsa-miR-106b-5p mir-106b/5p -hsa-mir-106b hsa-miR-106b-3p mir-106b/3p -hsa-mir-106b hsa-miR-106b mir-106b/106b -hsa-mir-106b hsa-miR-106b* mir-106b/106b* -hsa-mir-106a hsa-miR-106a-3p mir-106a/3p -hsa-mir-106a hsa-miR-106a-5p mir-106a/5p -hsa-mir-548aa-1 hsa-miR-548aa mir-548aa-1/548aa -hsa-mir-548aa-2 hsa-miR-548aa mir-548aa-2/548aa -hsa-mir-548ab hsa-miR-548ab mir-548ab/548ab -hsa-mir-548ac hsa-miR-548ac mir-548ac/548ac -hsa-mir-106a hsa-miR-106a mir-106a/106a -hsa-mir-106a hsa-miR-106a* mir-106a/106a* -hsa-mir-106-X hsa-miR-106a-3p mir-106-X/3p -hsa-mir-548ag-1 hsa-miR-548ag mir-548ag-1/548ag -hsa-mir-548ag-2 hsa-miR-548ag mir-548ag-2/548ag -hsa-mir-106-X hsa-miR-106a-5p mir-106-X/5p -hsa-mir-548ai hsa-miR-548ai mir-548ai/548ai -hsa-mir-106-X hsa-miR-106a mir-106-X/106a -hsa-mir-106 hsa-miR-106a-3p mir-106/3p -hsa-mir-548ak hsa-miR-548ak mir-548ak/548ak -hsa-mir-548al hsa-miR-548al mir-548al/548al -hsa-mir-106 hsa-miR-106a-5p mir-106/5p -hsa-mir-548an hsa-miR-548an mir-548an/548an -hsa-mir-106 hsa-miR-106a mir-106/106a -hsa-mir-105-X.2 hsa-miR-105-3p mir-105-X.2/3p -hsa-mir-105-X.2 hsa-miR-105-5p mir-105-X.2/5p -hsa-mir-105-X.2 hsa-miR-105 mir-105-X.2/105 -hsa-mir-105-X.1 hsa-miR-105-5p mir-105-X.1/5p -hsa-mir-105-X.1 hsa-miR-105 mir-105-X.1/105 -hsa-mir-105-X.1 hsa-miR-105-3p mir-105-X.1/3p -hsa-mir-105-2 hsa-miR-105-3p mir-105-2/3p -hsa-mir-548e hsa-miR-548e mir-548e/548e -hsa-mir-105-2 hsa-miR-105-5p mir-105-2/5p -hsa-mir-548f-2 hsa-miR-548f mir-548f-2/548f -hsa-mir-105-2 hsa-miR-105 mir-105-2/105 -hsa-mir-548f-4 hsa-miR-548f mir-548f-4/548f -hsa-mir-105-2 hsa-miR-105* mir-105-2/105* -hsa-mir-548g hsa-miR-548g mir-548g/548g -hsa-mir-548h-1 hsa-miR-548h mir-548h-1/548h -hsa-mir-548h-2 hsa-miR-548h mir-548h-2/548h -hsa-mir-548h-3 hsa-miR-548h mir-548h-3/548h -hsa-mir-548h-4 hsa-miR-548h mir-548h-4/548h -hsa-mir-105-1 hsa-miR-105-5p mir-105-1/5p -hsa-mir-548i-1 hsa-miR-548i mir-548i-1/548i -hsa-mir-548i-2 hsa-miR-548i mir-548i-2/548i -hsa-mir-548i-3 hsa-miR-548i mir-548i-3/548i -hsa-mir-548i-4 hsa-miR-548i mir-548i-4/548i -hsa-mir-548j hsa-miR-548j mir-548j/548j -hsa-mir-548k hsa-miR-548k mir-548k/548k -hsa-mir-548l hsa-miR-548l mir-548l/548l -hsa-mir-548m hsa-miR-548m mir-548m/548m -hsa-mir-548n hsa-miR-548n mir-548n/548n -hsa-mir-548o hsa-miR-548o mir-548o/548o -hsa-mir-105-1 hsa-miR-105-3p mir-105-1/3p -hsa-mir-548p hsa-miR-548p mir-548p/548p -hsa-mir-548q hsa-miR-548q mir-548q/548q -hsa-mir-548s hsa-miR-548s mir-548s/548s -hsa-mir-105-1 hsa-miR-105 mir-105-1/105 -hsa-mir-548u hsa-miR-548u mir-548u/548u -hsa-mir-548v hsa-miR-548v mir-548v/548v -hsa-mir-548w hsa-miR-548w mir-548w/548w -hsa-mir-105-1 hsa-miR-105* mir-105-1/105* -hsa-mir-10400 hsa-miR-10400-5p mir-10400/5p -hsa-mir-548y hsa-miR-548y mir-548y/548y -hsa-mir-548z hsa-miR-548z mir-548z/548z -hsa-mir-10400 hsa-miR-10400-3p mir-10400/3p -hsa-mir-103b-1 hsa-miR-103-as mir-103b-1/103-as -hsa-mir-103b-1 hsa-miR-103b mir-103b-1/103b -hsa-mir-103a-2 hsa-miR-103a-2-5p mir-103a-2/5p -hsa-mir-103a-2 hsa-miR-103a-3p mir-103a-2/3p -hsa-mir-103a-2 hsa-miR-103a-2* mir-103a-2/2* -hsa-mir-103a-2 hsa-miR-103a mir-103a-2/103a -hsa-mir-103a-1 hsa-miR-103a-1-5p mir-103a-1/5p -hsa-mir-551a hsa-miR-551a mir-551a/551a -hsa-mir-103a-1 hsa-miR-103a-3p mir-103a-1/3p -hsa-mir-103a-1 hsa-miR-103a mir-103a-1/103a -hsa-mir-10399 hsa-miR-10399-5p mir-10399/5p -hsa-mir-553 hsa-miR-553 mir-553/553 -hsa-mir-554 hsa-miR-554 mir-554/554 -hsa-mir-555 hsa-miR-555 mir-555/555 -hsa-mir-10399 hsa-miR-10399-3p mir-10399/3p -hsa-mir-10398 hsa-miR-10398-5p mir-10398/5p -hsa-mir-557 hsa-miR-557 mir-557/557 -hsa-mir-558 hsa-miR-558 mir-558/558 -hsa-mir-559 hsa-miR-559 mir-559/559 -hsa-mir-10398 hsa-miR-10398-3p mir-10398/3p -hsa-mir-562 hsa-miR-562 mir-562/562 -hsa-mir-563 hsa-miR-563 mir-563/563 -hsa-mir-564 hsa-miR-564 mir-564/564 -hsa-mir-566 hsa-miR-566 mir-566/566 -hsa-mir-567 hsa-miR-567 mir-567/567 -hsa-mir-568 hsa-miR-568 mir-568/568 -hsa-mir-569 hsa-miR-569 mir-569/569 -hsa-mir-10397 hsa-miR-10397-5p mir-10397/5p -hsa-mir-571 hsa-miR-571 mir-571/571 -hsa-mir-572 hsa-miR-572 mir-572/572 -hsa-mir-573 hsa-miR-573 mir-573/573 -hsa-mir-10397 hsa-miR-10397-3p mir-10397/3p -hsa-mir-10396b hsa-miR-10396b-5p mir-10396b/5p -hsa-mir-575 hsa-miR-575 mir-575/575 -hsa-mir-10396b hsa-miR-10396b-3p mir-10396b/3p -hsa-mir-10396a hsa-miR-10396a-5p mir-10396a/5p -hsa-mir-577 hsa-miR-577 mir-577/577 -hsa-mir-578 hsa-miR-578 mir-578/578 -hsa-mir-10396a hsa-miR-10396a-3p mir-10396a/3p -hsa-mir-10394 hsa-miR-10394-5p mir-10394/5p -hsa-mir-581 hsa-miR-581 mir-581/581 -hsa-mir-10394 hsa-miR-10394-3p mir-10394/3p -hsa-mir-10393 hsa-miR-10393-5p mir-10393/5p -hsa-mir-583 hsa-miR-583 mir-583/583 -hsa-mir-10393 hsa-miR-10393-3p mir-10393/3p -hsa-mir-10392 hsa-miR-10392-5p mir-10392/5p -hsa-mir-586 hsa-miR-586 mir-586/586 -hsa-mir-587 hsa-miR-587 mir-587/587 -hsa-mir-588 hsa-miR-588 mir-588/588 -hsa-mir-10392 hsa-miR-10392-3p mir-10392/3p -hsa-mir-103-5 hsa-miR-103a-1-5p mir-103-5/5p -hsa-mir-103-5 hsa-miR-103a-3p mir-103-5/3p -hsa-mir-103-1-as hsa-miR-103b mir-103-1-as/103b -hsa-mir-591 hsa-miR-591 mir-591/591 -hsa-mir-592 hsa-miR-592 mir-592/592 -hsa-mir-103-1-as hsa-miR-103-as mir-103-1-as/103-as -hsa-mir-103-1 hsa-miR-103a-1-5p mir-103-1/5p -hsa-mir-595 hsa-miR-595 mir-595/595 -hsa-mir-596 hsa-miR-596 mir-596/596 -hsa-mir-103-1 hsa-miR-103a-3p mir-103-1/3p -hsa-mir-102-7.1 hsa-miR-29b-1-5p mir-102-7.1/5p -hsa-mir-599 hsa-miR-599 mir-599/599 -hsa-mir-600 hsa-miR-600 mir-600/600 -hsa-mir-601 hsa-miR-601 mir-601/601 -hsa-mir-602 hsa-miR-602 mir-602/602 -hsa-mir-603 hsa-miR-603 mir-603/603 -hsa-mir-604 hsa-miR-604 mir-604/604 -hsa-mir-102-7.1 hsa-miR-29b-3p mir-102-7.1/3p -hsa-mir-606 hsa-miR-606 mir-606/606 -hsa-mir-607 hsa-miR-607 mir-607/607 -hsa-mir-608 hsa-miR-608 mir-608/608 -hsa-mir-609 hsa-miR-609 mir-609/609 -hsa-mir-610 hsa-miR-610 mir-610/610 -hsa-mir-611 hsa-miR-611 mir-611/611 -hsa-mir-612 hsa-miR-612 mir-612/612 -hsa-mir-613 hsa-miR-613 mir-613/613 -hsa-mir-614 hsa-miR-614 mir-614/614 -hsa-mir-102-7.1 hsa-miR-29b mir-102-7.1/29b -hsa-mir-102-2 hsa-miR-29b-1-5p mir-102-2/5p -hsa-mir-102-2 hsa-miR-29b-3p mir-102-2/3p -hsa-mir-102-2 hsa-miR-29b mir-102-2/29b -hsa-mir-617 hsa-miR-617 mir-617/617 -hsa-mir-618 hsa-miR-618 mir-618/618 -hsa-mir-102-1 hsa-miR-29b-2-5p mir-102-1/5p -hsa-mir-620 hsa-miR-620 mir-620/620 -hsa-mir-621 hsa-miR-621 mir-621/621 -hsa-mir-622 hsa-miR-622 mir-622/622 -hsa-mir-623 hsa-miR-623 mir-623/623 -hsa-mir-102-1 hsa-miR-29b-3p mir-102-1/3p -hsa-mir-102-1 hsa-miR-29b mir-102-1/29b -hsa-mir-101-2 hsa-miR-101-2-5p mir-101-2/5p -hsa-mir-101-2 hsa-miR-101-3p mir-101-2/3p -hsa-mir-626 hsa-miR-626 mir-626/626 -hsa-mir-101-2 hsa-miR-101 mir-101-2/101 -hsa-mir-101-1 hsa-miR-101-5p mir-101-1/5p -hsa-mir-101-1 hsa-miR-101-3p mir-101-1/3p -hsa-mir-101-1 hsa-miR-101* mir-101-1/101* -hsa-mir-101-1 hsa-miR-101 mir-101-1/101 -hsa-mir-630 hsa-miR-630 mir-630/630 -hsa-mir-631 hsa-miR-631 mir-631/631 -hsa-mir-632 hsa-miR-632 mir-632/632 -hsa-mir-633 hsa-miR-633 mir-633/633 -hsa-mir-634 hsa-miR-634 mir-634/634 -hsa-mir-635 hsa-miR-635 mir-635/635 -hsa-mir-636 hsa-miR-636 mir-636/636 -hsa-mir-637 hsa-miR-637 mir-637/637 -hsa-mir-638 hsa-miR-638 mir-638/638 -hsa-mir-639 hsa-miR-639 mir-639/639 -hsa-mir-640 hsa-miR-640 mir-640/640 -hsa-mir-641 hsa-miR-641 mir-641/641 -hsa-mir-101 hsa-miR-101-5p mir-101/5p -hsa-mir-101 hsa-miR-101-3p mir-101/3p -hsa-mir-643 hsa-miR-643 mir-643/643 -hsa-mir-101 hsa-miR-101 mir-101/101 -hsa-mir-645 hsa-miR-645 mir-645/645 -hsa-mir-646 hsa-miR-646 mir-646/646 -hsa-mir-647 hsa-miR-647 mir-647/647 -hsa-mir-648 hsa-miR-648 mir-648/648 -hsa-mir-649 hsa-miR-649 mir-649/649 -hsa-mir-650 hsa-miR-650 mir-650/650 -hsa-mir-100-11 hsa-miR-100-5p mir-100-11/5p -hsa-mir-100-11 hsa-miR-100 mir-100-11/100 -hsa-mir-100-11 hsa-miR-100-3p mir-100-11/3p -hsa-mir-100 hsa-miR-100-5p mir-100/5p -hsa-mir-100 hsa-miR-100-3p mir-100/3p -hsa-mir-100 hsa-miR-100 mir-100/100 -hsa-mir-100 hsa-miR-100* mir-100/100* -hsa-mir-657 hsa-miR-657 mir-657/657 -hsa-mir-658 hsa-miR-658 mir-658/658 -hsa-mir-1-2 hsa-miR-1-3p mir-1-2/3p -hsa-mir-1-2 hsa-miR-1 mir-1-2/1 -hsa-mir-661 hsa-miR-661 mir-661/661 -hsa-mir-662 hsa-miR-662 mir-662/662 -hsa-mir-1-1 hsa-miR-1-3p mir-1-1/3p -hsa-mir-663b hsa-miR-663b mir-663b/663b -hsa-mir-1-1 hsa-miR-1-5p mir-1-1/5p -hsa-mir-1-1 hsa-miR-1 mir-1-1/1 -hsa-mir-665 hsa-miR-665 mir-665/665 -hsa-let-7i hsa-let-7i-5p let-7i/5p -hsa-mir-670 hsa-miR-670 mir-670/670 -hsa-let-7i hsa-let-7i-3p let-7i/3p -hsa-let-7i hsa-let-7i let-7i/7i -hsa-let-7i hsa-let-7i* let-7i/7i* -hsa-let-7g hsa-let-7g-5p let-7g/5p -hsa-let-7g hsa-let-7g-3p let-7g/3p -hsa-let-7g hsa-let-7g let-7g/7g -hsa-let-7g hsa-let-7g* let-7g/7g* -hsa-let-7f-2L hsa-let-7f-2-3p let-7f-2L/3p -hsa-let-7f-2L hsa-let-7f-5p let-7f-2L/5p -hsa-let-7f-2L hsa-let-7f let-7f-2L/7f -hsa-let-7f-2 hsa-let-7f-2-3p let-7f-2/3p -hsa-let-7f-2 hsa-let-7f-5p let-7f-2/5p -hsa-let-7f-2 hsa-let-7f-2* let-7f-2/2* -hsa-mir-711 hsa-miR-711 mir-711/711 -hsa-mir-718 hsa-miR-718 mir-718/718 -hsa-mir-720 hsa-miR-720 mir-720/720 -hsa-let-7f-2 hsa-let-7f let-7f-2/7f -hsa-let-7f-1L hsa-let-7f-5p let-7f-1L/5p -hsa-let-7f-1L hsa-let-7f let-7f-1L/7f -hsa-mir-759 hsa-miR-759 mir-759/759 -hsa-mir-760 hsa-miR-760 mir-760/760 -hsa-mir-761 hsa-miR-761 mir-761/761 -hsa-mir-762 hsa-miR-762 mir-762/762 -hsa-mir-764 hsa-miR-764 mir-764/764 -hsa-mir-765 hsa-miR-765 mir-765/765 -hsa-let-7f-1L hsa-let-7f-1-3p let-7f-1L/3p -hsa-let-7f-1 hsa-let-7f-5p let-7f-1/5p -hsa-let-7f-1 hsa-let-7f-1-3p let-7f-1/3p -hsa-let-7f-1 hsa-let-7f let-7f-1/7f -hsa-let-7f-1 hsa-let-7f-1* let-7f-1/1* -hsa-let-7eL hsa-let-7e-5p let-7eL/5p -hsa-mir-802 hsa-miR-802 mir-802/802 -hsa-let-7eL hsa-let-7e let-7eL/7e -hsa-let-7eL hsa-let-7e-3p let-7eL/3p -hsa-let-7e hsa-let-7e-5p let-7e/5p -hsa-let-7e hsa-let-7e-3p let-7e/3p -hsa-let-7e hsa-let-7e let-7e/7e -hsa-let-7e hsa-let-7e* let-7e/7e* -hsa-let-7dL hsa-let-7d-5p let-7dL/5p -hsa-let-7dL hsa-let-7d let-7dL/7d -hsa-let-7dL hsa-let-7d-3p let-7dL/3p -hsa-let-7d hsa-let-7d-5p let-7d/5p -hsa-let-7d hsa-let-7d-3p let-7d/3p -hsa-let-7d hsa-let-7d let-7d/7d -hsa-let-7d hsa-let-7d* let-7d/7d* -hsa-let-7bL hsa-let-7b let-7bL/7b -hsa-mir-890 hsa-miR-890 mir-890/890 -hsa-let-7bL hsa-let-7b-5p let-7bL/5p -hsa-mir-891b hsa-miR-891b mir-891b/891b -hsa-mir-892a hsa-miR-892a mir-892a/892a -hsa-mir-892b hsa-miR-892b mir-892b/892b -hsa-let-7bL hsa-let-7b-3p let-7bL/3p -hsa-let-7b hsa-let-7b-5p let-7b/5p -hsa-let-7b hsa-let-7b-3p let-7b/3p -hsa-let-7b hsa-let-7b let-7b/7b -hsa-let-7b hsa-let-7b* let-7b/7b* -hsa-let-7a-3L hsa-let-7a-5p let-7a-3L/5p -hsa-mir-920 hsa-miR-920 mir-920/920 -hsa-mir-921 hsa-miR-921 mir-921/921 -hsa-mir-922 hsa-miR-922 mir-922/922 -hsa-mir-924 hsa-miR-924 mir-924/924 -hsa-let-7a-3L hsa-let-7a-3p let-7a-3L/3p -hsa-let-7a-3L hsa-let-7a let-7a-3L/7a -hsa-let-7a-3 hsa-let-7a-5p let-7a-3/5p -hsa-let-7a-3 hsa-let-7a-3p let-7a-3/3p -hsa-let-7a-3 hsa-let-7a let-7a-3/7a -hsa-let-7a-3 hsa-let-7a* let-7a-3/7a* -hsa-let-7a-2L hsa-let-7a-5p let-7a-2L/5p -hsa-let-7a-2L hsa-let-7a let-7a-2L/7a -hsa-mir-933 hsa-miR-933 mir-933/933 -hsa-mir-934 hsa-miR-934 mir-934/934 -hsa-mir-935 hsa-miR-935 mir-935/935 -hsa-mir-936 hsa-miR-936 mir-936/936 -hsa-let-7a-2L hsa-let-7a-2-3p let-7a-2L/3p -hsa-mir-938 hsa-miR-938 mir-938/938 -hsa-mir-939 hsa-miR-939 mir-939/939 -hsa-mir-940 hsa-miR-940 mir-940/940 -hsa-mir-941-1 hsa-miR-941 mir-941-1/941 -hsa-mir-941-2 hsa-miR-941 mir-941-2/941 -hsa-mir-941-3 hsa-miR-941 mir-941-3/941 -hsa-mir-941-4 hsa-miR-941 mir-941-4/941 -hsa-let-7a-2 hsa-let-7a-5p let-7a-2/5p -hsa-mir-943 hsa-miR-943 mir-943/943 -hsa-mir-944 hsa-miR-944 mir-944/944 -hsa-let-7a-2 hsa-let-7a-2-3p let-7a-2/3p -hsa-let-7a-2 hsa-let-7a-2* let-7a-2/2* -hsa-let-7a-2 hsa-let-7a let-7a-2/7a -hsa-let-7a-1 hsa-let-7a-5p let-7a-1/5p -hsa-let-7a-1 hsa-let-7a-1L let-7a-1/7a-1L -hsa-let-7a-1 hsa-let-7a-3p let-7a-1/3p -hsa-let-7a-1 hsa-let-7a let-7a-1/7a -hsa-let-7a-1 hsa-let-7a* let-7a-1/7a* \ No newline at end of file diff --git a/core/src/main/resources/mycancergenome.txt b/core/src/main/resources/mycancergenome.txt deleted file mode 100644 index cc26fe098c0..00000000000 --- a/core/src/main/resources/mycancergenome.txt +++ /dev/null @@ -1,428 +0,0 @@ -#This file is generated from https://www.mycancergenome.org/sitemap -#Last updated: 3/1/2016 -#Gene Alteration Cancer Link -CRLF2 F232C Acute Lymphoblastic Leukemia CRLF2 c.695T>G (F232C) Mutation in Acute Lymphoblastic Leukemia -CRLF2 Fusions Acute Lymphoblastic Leukemia CRLF2 Fusions in Acute Lymphoblastic Leukemia -JAK2 R683G Acute Lymphoblastic Leukemia JAK2 c.2047A>G (R683G) Mutation in Acute Lymphoblastic Leukemia -JAK2 R683S Acute Lymphoblastic Leukemia JAK2 c.2049A>T (R683S) Mutation in Acute Lymphoblastic Leukemia -JAK2 R683S Acute Lymphoblastic Leukemia JAK2 c.2049A>C (R683S) Mutation in Acute Lymphoblastic Leukemia -JAK2 R683T Acute Lymphoblastic Leukemia JAK2 c.2048G>C (R683T) Mutation in Acute Lymphoblastic Leukemia -CBFB-MYH11 t(16;16)(p13.1;q22) Translocation Acute Myeloid Leukemia CBFB-MYH11 t(16;16)(p13.1;q22) Translocation in Acute Myeloid Leukemia -CBFB-MYH11 inv(16)(p13.1q22) Inversion Acute Myeloid Leukemia CBFB-MYH11 inv(16)(p13.1q22) Inversion in Acute Myeloid Leukemia -DEK-NUP214 t(6;9)(p23;q34) Translocation Acute Myeloid Leukemia DEK-NUP214 t(6;9)(p23;q34) Translocation in Acute Myeloid Leukemia -DNMT3A R882C Acute Myeloid Leukemia DNMT3A c.2644C>T (R882C) Mutation in Acute Myeloid Leukemia -DNMT3A R882S Acute Myeloid Leukemia DNMT3A c.2644C>A (R882S) Mutation in Acute Myeloid Leukemia -DNMT3A R882H Acute Myeloid Leukemia DNMT3A c.2645G>A (R882H) Mutation in Acute Myeloid Leukemia -DNMT3A R882P Acute Myeloid Leukemia DNMT3A c.2645G>C (R882P) Mutation in Acute Myeloid Leukemia -DNMT3A R882G Acute Myeloid Leukemia DNMT3A c.2644C>G (R882G) Mutation in Acute Myeloid Leukemia -DNMT3A R882L Acute Myeloid Leukemia DNMT3A c.2645G>T (R882L) Mutation in Acute Myeloid Leukemia -FLT3 Internal Tandem Duplication Acute Myeloid Leukemia FLT3 Internal Tandem Duplication in Acute Myeloid Leukemia -FLT3 D835H Acute Myeloid Leukemia FLT3 c.2503G>C (D835H) Mutation in Acute Myeloid Leukemia -FLT3 D835N Acute Myeloid Leukemia FLT3 c.2503G>A (D835N) Mutation in Acute Myeloid Leukemia -FLT3 D835Y Acute Myeloid Leukemia FLT3 c.2503G>T (D835Y) Mutation in Acute Myeloid Leukemia -FLT3 D835A Acute Myeloid Leukemia FLT3 c. 2504A>C (D835A) Mutation in Acute Myeloid Leukemia -FLT3 D835V Acute Myeloid Leukemia FLT3 c.2504A>T (D835V) Mutation in Acute Myeloid Leukemia -FLT3 D835E Acute Myeloid Leukemia FLT3 c.2505T>G (D835E) Mutation in Acute Myeloid Leukemia -FLT3 I836L Acute Myeloid Leukemia FLT3 c.2506A>C (I836L) Mutation in Acute Myeloid Leukemia -FLT3 I836V Acute Myeloid Leukemia FLT3 c.2506A>G (I836V) Mutation in Acute Myeloid Leukemia -FLT3 I836D Acute Myeloid Leukemia FLT3 c.2506_2507delATinsGA (I836D) Mutation in Acute Myeloid Leukemia -FLT3 I836H Acute Myeloid Leukemia FLT3 c.2506_2507delATinsCA (I836H) Mutation in Acute Myeloid Leukemia -FLT3 D835E Acute Myeloid Leukemia FLT3 c.2505T>A (D835E) Mutation in Acute Myeloid Leukemia -FLT3 I836F Acute Myeloid Leukemia FLT3 c.2506A>T (I836F) Mutation in Acute Myeloid Leukemia -FLT3 I836M Acute Myeloid Leukemia FLT3 c.2508C>G (I836M) Mutation in Acute Myeloid Leukemia -IDH1 R132C Acute Myeloid Leukemia IDH1 c.394C>T (R132C) Mutation in Acute Myeloid Leukemia -IDH1 R132G Acute Myeloid Leukemia IDH1 c.394C>G (R132G) Mutation in Acute Myeloid Leukemia -IDH1 R132S Acute Myeloid Leukemia IDH1 c.394C>A (R132S) Mutation in Acute Myeloid Leukemia -IDH1 R132H Acute Myeloid Leukemia IDH1 c.395G>A (R132H) Mutation in Acute Myeloid Leukemia -IDH1 R132L Acute Myeloid Leukemia IDH1 c.395G>T (R132L) Mutation in Acute Myeloid Leukemia -IDH1 R132P Acute Myeloid Leukemia IDH1 c.395G>C (R132P) Mutation in Acute Myeloid Leukemia -IDH2 R140Q Acute Myeloid Leukemia IDH2 c.419G>A (R140Q) Mutation in Acute Myeloid Leukemia -IDH2 R140W Acute Myeloid Leukemia IDH2 c.418C>T (R140W) Mutation in Acute Myeloid Leukemia -IDH2 R140L Acute Myeloid Leukemia IDH2 c.419G>T (R140L) Mutation in Acute Myeloid Leukemia -IDH2 R140G Acute Myeloid Leukemia IDH2 c.418C>G (R140G) Mutation in Acute Myeloid Leukemia -IDH2 R172K Acute Myeloid Leukemia IDH2 c.515G>A (R172K) Mutation in Acute Myeloid Leukemia -IDH2 R172M Acute Myeloid Leukemia IDH2 c.515G>T (R172M) Mutation in Acute Myeloid Leukemia -IDH2 R172S Acute Myeloid Leukemia IDH2 c.516G>C (R172S) Mutation in Acute Myeloid Leukemia -KIT Exon 8 Mutation Acute Myeloid Leukemia KIT Exon 8 Mutation in Acute Myeloid Leukemia -KIT D816Y Acute Myeloid Leukemia KIT c.2446G>T (D816Y) Mutation in Acute Myeloid Leukemia -KIT D816V Acute Myeloid Leukemia KIT c.2447A>T (D816V) Mutation in Acute Myeloid Leukemia -KIT D816I Acute Myeloid Leukemia KIT c.2446_2447delGAinsAT (D816I) Mutation in Acute Myeloid Leukemia -KIT D816H Acute Myeloid Leukemia KIT c.2446G>C (D816H) Mutation in Acute Myeloid Leukemia -MLL-MLLT3 t(9;11)(p22;q23) Translocation Acute Myeloid Leukemia MLL-MLLT3 t(9;11)(p22;q23) Translocation in Acute Myeloid Leukemia -PML-RARA t(15;17)(q22;q12) Translocation Acute Myeloid Leukemia PML-RARA t(15;17)(q22;q12) Translocation in Acute Myeloid Leukemia -RBM15-MKL1 t(1;22)(p13;q13) Translocation Acute Myeloid Leukemia RBM15-MKL1 t(1;22)(p13;q13) Translocation in Acute Myeloid Leukemia -RPN1-EVI1 (RPN1-MECOM) inv(3)(q21q26.2) Inversion Acute Myeloid Leukemia RPN1-EVI1 (RPN1-MECOM) inv(3)(q21q26.2) Inversion in Acute Myeloid Leukemia -RPN1-EVI1 (RPN1-MECOM) t(3;3)(q21;q26.2) Translocation Acute Myeloid Leukemia RPN1-EVI1 (RPN1-MECOM) t(3;3)(q21;q26.2) Translocation in Acute Myeloid Leukemia -RUNX1-RUNX1T1 t(8;21)(q22;q22) Translocation Acute Myeloid Leukemia RUNX1-RUNX1T1 t(8;21)(q22;q22) Translocation in Acute Myeloid Leukemia -ALK Fusions Anaplastic Large Cell Lymphoma ALK Fusions in Anaplastic Large Cell Lymphoma -SMO D473H Basal Cell Carcinoma SMO c.1417G>C (D473H) Mutation in Basal Cell Carcinoma -SMO A68V Basal Cell Carcinoma SMO c.203_204delCCinsTT (A68V) Mutation in Basal Cell Carcinoma -SMO R199W Basal Cell Carcinoma SMO c.595C>T (R199W) Mutation in Basal Cell Carcinoma -SMO T349I Basal Cell Carcinoma SMO c.1046_1047delCCinsTT (T349I) Mutation in Basal Cell Carcinoma -SMO R485W Basal Cell Carcinoma SMO c.1452_1453delCCinsTT (R485W) Mutation in Basal Cell Carcinoma -SMO L515F Basal Cell Carcinoma SMO c.1542_1543delCCinsTT (L515F) Mutation in Basal Cell Carcinoma -SMO W535L Basal Cell Carcinoma SMO c.1604G>T (W535L) Mutation in Basal Cell Carcinoma -SMO R562Q Basal Cell Carcinoma SMO c.1685G>A (R562Q) Mutation in Basal Cell Carcinoma -SMO A652V Basal Cell Carcinoma SMO c.1955C>T (A652V) Mutation in Basal Cell Carcinoma -SMO P755F Basal Cell Carcinoma SMO c.2263_2264delCCinsTT (P755F) Mutation in Basal Cell Carcinoma -TSC1 E636fs Bladder Cancer TSC1 c.1907_1908del (E636fs) Mutation in Bladder Cancer -AKT1 E17K Breast Cancer AKT1 c.49G>A (E17K) Mutation in Breast Cancer -AR Expression Breast Cancer AR Expression in Breast Cancer -ESR1 Expression Breast Cancer ER (ESR1) Expression in Breast Cancer -FGFR1 Amplification Breast Cancer FGFR1 Amplification in Breast Cancer -FGFR2 Amplification Breast Cancer FGFR2 Amplification in Breast Cancer -ERBB2 Amplification Breast Cancer HER2 (ERBB2) Amplification in Breast Cancer -ERBB2 Overexpression Breast Cancer HER2 (ERBB2) Overexpression in Breast Cancer -ERBB2 G309A Breast Cancer HER2 (ERBB2) c.926G>C (G309A) Mutation in Breast Cancer -ERBB2 D769H Breast Cancer HER2 (ERBB2) c.2305G>C (D769H) Mutation in Breast Cancer -ERBB2 D769Y Breast Cancer HER2 (ERBB2) c.2305G>T (D769Y) Mutation in Breast Cancer -ERBB2 L755_T759del Breast Cancer HER2 (ERBB2) c.2264_2278del (L755_T759del) Mutation in Breast Cancer -ERBB2 G778_P780dup Breast Cancer HER2 (ERBB2) c.2339_2340ins (G778_P780dup) Mutation in Breast Cancer -ERBB2 V842I Breast Cancer HER2 (ERBB2) c.2524G>A (V842I) Mutation in Breast Cancer -ERBB2 R896C Breast Cancer HER2 (ERBB2) c.2686C>T (R896C) Mutation in Breast Cancer -ERBB2 L755S Breast Cancer HER2 (ERBB2) c.2264T>C (L755S) Mutation in Breast Cancer -ERBB2 V777L Breast Cancer HER2 (ERBB2) c.2329G>T (V777L) Mutation in Breast Cancer -PIK3CA H1047L Breast Cancer PIK3CA c.3140A>T (H1047L) Mutation in Breast Cancer -PIK3CA H1047R Breast Cancer PIK3CA c.3140A>G (H1047R) Mutation in Breast Cancer -PIK3CA E545G Breast Cancer PIK3CA c.1634A>G (E545G) Mutation in Breast Cancer -PIK3CA E545V Breast Cancer PIK3CA c.1634A>T (E545V) Mutation in Breast Cancer -PIK3CA Q546E Breast Cancer PIK3CA c.1636C>G (Q546E) Mutation in Breast Cancer -PIK3CA Q546K Breast Cancer PIK3CA c.1636C>A (Q546K) Mutation in Breast Cancer -PIK3CA Q546L Breast Cancer PIK3CA c.1637A>T (Q546L) Mutation in Breast Cancer -PIK3CA Q546P Breast Cancer PIK3CA c.1637A>C (Q546P) Mutation in Breast Cancer -PIK3CA Q546R Breast Cancer PIK3CA c.1637A>G (Q546R) Mutation in Breast Cancer -PIK3CA D549N Breast Cancer PIK3CA c.1645G>A (D549N) Mutation in Breast Cancer -PIK3CA E542K Breast Cancer PIK3CA c.1624G>A (E542K) Mutation in Breast Cancer -PIK3CA E545K Breast Cancer PIK3CA c.1633G>A (E545K) Mutation in Breast Cancer -PIK3CA E545Q Breast Cancer PIK3CA c.1633G>C (E545Q) Mutation in Breast Cancer -PGR Expression Breast Cancer PR (PGR) Expression in Breast Cancer -PTEN R159Ss Breast Cancer PTEN c.477G>T (R159S) Mutations in Breast Cancer -PTEN R233* Breast Cancer PTEN c.697C>T (R233*) Mutations in Breast Cancer -PTEN K267fs Breast Cancer PTEN c.800delA (K267fs*9) Mutations in Breast Cancer -BIRC3 Truncating Mutations Chronic Lymphocytic Leukemia BIRC3 Truncating Mutations in Chronic Lymphocytic Leukemia -NOTCH1 P2514fs Chronic Lymphocytic Leukemia NOTCH1 c.7541_7542delCT (P2514fs) Mutation in Chronic Lymphocytic Leukemia -NOTCH1 Truncating Mutations Chronic Lymphocytic Leukemia NOTCH1 Truncating Mutations in Chronic Lymphocytic Leukemia -BCR-ABL1 Fusions Chronic Myeloid Leukemia BCR-ABL1 Fusions in Chronic Myeloid Leukemia -BCR-ABL1 F359V Chronic Myeloid Leukemia BCR-ABL1 c.1075T>G (F359V) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F359I Chronic Myeloid Leukemia BCR-ABL1 c.1075T>A (F359I) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F359C Chronic Myeloid Leukemia BCR-ABL1 c.1076T>G (F359C) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 E255V Chronic Myeloid Leukemia BCR-ABL1 c.764A>T (E255V) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F317V Chronic Myeloid Leukemia BCR-ABL1 c.949T>G (F317V) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F317L Chronic Myeloid Leukemia BCR-ABL1 c.951C>G (F317L) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F317L Chronic Myeloid Leukemia BCR-ABL1 c.949T>C (F317L) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F317L Chronic Myeloid Leukemia BCR-ABL1 c.951C>A (F317L) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F317I Chronic Myeloid Leukemia BCR-ABL1 c.949T>A (F317I) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 F317C Chronic Myeloid Leukemia BCR-ABL1 c.950T>G (F317C) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 T315I Chronic Myeloid Leukemia BCR-ABL1 c.944C>T (T315I) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 T315A Chronic Myeloid Leukemia BCR-ABL1 c.943A>G (T315A) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 V299L Chronic Myeloid Leukemia BCR-ABL1 c.895G>T (V299L) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 V299L Chronic Myeloid Leukemia BCR-ABL1 c.895G>C (V299L) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 E255K Chronic Myeloid Leukemia BCR-ABL1 c.763G>A (E255K) Mutation in Chronic Myeloid Leukemia -BCR-ABL1 Y253H Chronic Myeloid Leukemia BCR-ABL1 c.757T>C (Y253H) Mutation in Chronic Myeloid Leukemia -AKT1 E17K Colorectal Cancer AKT1 c.49G>A (E17K) Mutation in Colorectal Cancer -BRAF G469E Colorectal Cancer BRAF c.1406G>A (G469E) Mutation in Colorectal Cancer -BRAF G469V Colorectal Cancer BRAF c.1406G>T (G469V) Mutation in Colorectal Cancer -BRAF D594G Colorectal Cancer BRAF c.1781A>G (D594G) Mutation in Colorectal Cancer -BRAF D594V Colorectal Cancer BRAF c.1781A>T (D594V) Mutation in Colorectal Cancer -BRAF G596R Colorectal Cancer BRAF c.1786G>C (G596R) Mutation in Colorectal Cancer -BRAF V600E Colorectal Cancer BRAF c.1799T>A (V600E) Mutation in Colorectal Cancer -BRAF G466V Colorectal Cancer BRAF c.1397G>T (G466V) Mutation in Colorectal Cancer -BRAF G469A Colorectal Cancer BRAF c.1406G>C (G469A) Mutation in Colorectal Cancer -KRAS G13V Colorectal Cancer KRAS c.38G>T (G13V) Mutation in Colorectal Cancer -KRAS K117N Colorectal Cancer KRAS c.351A>C (K117N) Mutation in Colorectal Cancer -KRAS K117N Colorectal Cancer KRAS c.351A>T (K117N) Mutation in Colorectal Cancer -KRAS A146P Colorectal Cancer KRAS c.436G>C (A146P) Mutation in Colorectal Cancer -KRAS A146T Colorectal Cancer KRAS c.436G>A (A146T) Mutation in Colorectal Cancer -KRAS A146V Colorectal Cancer KRAS c.437C>T (A146V) Mutation in Colorectal Cancer -KRAS Q61H Colorectal Cancer KRAS c.183A>C (Q61H) Mutation in Colorectal Cancer -KRAS Q61P Colorectal Cancer KRAS c.182A>C (Q61P) Mutation in Colorectal Cancer -KRAS Q61H Colorectal Cancer KRAS c.183A>T (Q61H) Mutation in Colorectal Cancer -KRAS G12A Colorectal Cancer KRAS c.35G>C (G12A) Mutation in Colorectal Cancer -KRAS G12C Colorectal Cancer KRAS c.34G>T (G12C) Mutation in Colorectal Cancer -KRAS G12D Colorectal Cancer KRAS c.35G>A (G12D) Mutation in Colorectal Cancer -KRAS G12R Colorectal Cancer KRAS c.34G>C (G12R) Mutation in Colorectal Cancer -KRAS G12S Colorectal Cancer KRAS c.34G>A (G12S) Mutation in Colorectal Cancer -KRAS G12V Colorectal Cancer KRAS c.35G>T (G12V) Mutation in Colorectal Cancer -KRAS G13C Colorectal Cancer KRAS c.37G>T (G13C) Mutation in Colorectal Cancer -KRAS G13D Colorectal Cancer KRAS c.38G>A (G13D) Mutation in Colorectal Cancer -KRAS G13R Colorectal Cancer KRAS c.37G>C (G13R) Mutation in Colorectal Cancer -KRAS Q61K Colorectal Cancer KRAS c.181C>A (Q61K) Mutation in Colorectal Cancer -KRAS Q61L Colorectal Cancer KRAS c.182A>T (Q61L) Mutation in Colorectal Cancer -KRAS Q61R Colorectal Cancer KRAS c.182A>G (Q61R) Mutation in Colorectal Cancer -KRAS G13A Colorectal Cancer KRAS c.38G>C (G13A) Mutation in Colorectal Cancer -KRAS G13S Colorectal Cancer KRAS c.37G>A (G13S) Mutation in Colorectal Cancer -NRAS Q61K Colorectal Cancer NRAS c.181C>A (Q61K) Mutation in Colorectal Cancer -NRAS Q61R Colorectal Cancer NRAS c.182A>G (Q61R) Mutation in Colorectal Cancer -NRAS G12A Colorectal Cancer NRAS c.35G>C (G12A) Mutation in Colorectal Cancer -NRAS G12C Colorectal Cancer NRAS c.34G>T (G12C) Mutation in Colorectal Cancer -NRAS G12D Colorectal Cancer NRAS c.35G>A (G12D) Mutation in Colorectal Cancer -NRAS G12S Colorectal Cancer NRAS c.34G>A (G12S) Mutation in Colorectal Cancer -NRAS G12V Colorectal Cancer NRAS c.35G>T (G12V) Mutation in Colorectal Cancer -PIK3CA H1047L Colorectal Cancer PIK3CA c.3140A>T (H1047L) Mutation in Colorectal Cancer -PIK3CA H1047R Colorectal Cancer PIK3CA c.3140A>G (H1047R) Mutation in Colorectal Cancer -PIK3CA E545G Coloretal Cancer PIK3CA c.1634A>G (E545G) Mutation in Coloretal Cancer -PIK3CA E545V Colorectal Cancer PIK3CA c.1634A>T (E545V) Mutation in Colorectal Cancer -PIK3CA Q546E Colorectal Cancer PIK3CA c.1636C>G (Q546E) Mutation in Colorectal Cancer -PIK3CA Q546K Colorectal Cancer PIK3CA c.1636C>A (Q546K) Mutation in Colorectal Cancer -PIK3CA Q546L Colorectal Cancer PIK3CA c.1637A>T (Q546L) Mutation in Colorectal Cancer -PIK3CA Q546P Colorectal Cancer PIK3CA c.1637A>C (Q546P) Mutation in Colorectal Cancer -PIK3CA Q546R Colorectal Cancer PIK3CA c.1637A>G (Q546R) Mutation in Colorectal Cancer -PIK3CA D549N Colorectal Cancer PIK3CA c.1645G>A (D549N) Mutation in Colorectal Cancer -PIK3CA E542K Colorectal Cancer PIK3CA c.1624G>A (E542K) Mutation in Colorectal Cancer -PIK3CA E545K Colorectal Cancer PIK3CA c.1633G>A (E545K) Mutation in Colorectal Cancer -PIK3CA E545Q Colorectal Cancer PIK3CA c.1633G>C (E545Q) Mutation in Colorectal Cancer -PTEN R159Ss Colorectal Cancer PTEN c.477G>T (R159S) Mutations in Colorectal Cancer -PTEN R233* Colorectal Cancer PTEN c.697C>T (R233*) Mutations in Colorectal Cancer -PTEN K267fs Colorectal Cancer PTEN c.800delA (K267fs*9) Mutations in Colorectal Cancer -SMAD4 E330A Colorectal Cancer SMAD4 c.989A>C (E330A) Mutation in Colorectal Cancer -SMAD4 D351H Colorectal Cancer SMAD4 c.1051G>C (D351H) Mutation in Colorectal Cancer -SMAD4 D537Y Colorectal Cancer SMAD4 c.1609G>T (D537Y) Mutation in Colorectal Cancer -SMAD4 D351N Colorectal Cancer SMAD4 c.1051G>A (D351N) mutation in Colorectal Cancer -SMAD4 D355E Colorectal Cancer SMAD4 c.1065C>A (D355E) Mutation in Colorectal Cancer -SMAD4 R361S Colorectal Cancer SMAD4 c.1081C>A (R361S) Mutation in Colorectal Cancer -SMAD4 R361C Colorectal Cancer SMAD4 c.1081C>T (R361C) Mutation in Colorectal Cancer -SMAD4 R361H Colorectal Cancer SMAD4 c.1082G>A (R361H) Mutation in Colorectal Cancer -ERBB2 Amplification Gastric Cancer HER2 (ERBB2) Amplification in Gastric Cancer -BRAF V600E GIST BRAF c.1799T>A (V600E) mutation in GIST -KIT Exon 9 Mutation GIST KIT Exon 9 Mutation in GIST -KIT Exon 11 Mutation GIST KIT Exon 11 Mutation in GIST -KIT Exon 13 Mutation GIST KIT Exon 13 Mutation in GIST -KIT Exon 14 Mutation GIST KIT Exon 14 Mutation in GIST -KIT Exon 17 Mutation GIST KIT Exon 17 Mutation in GIST -PDGFRA Exon 18 Mutation GIST PDGFRA Exon 18 Mutation in GIST (D842V) -PDGFRA Exon 12 Mutation GIST PDGFRA Exon 12 Mutation in GIST -PDGFRA Exon 14 Mutation GIST PDGFRA Exon 14 Mutation in GIST -PDGFRA Exon 18 Mutation GIST PDGFRA Exon 18 Mutation in GIST -BRAF V600E Glioma BRAF c.1799T>A (V600E) Mutation in Glioma -IDH1 R132C Glioma IDH1 c.394C>T (R132C) Mutation in Glioma -IDH1 R132G Glioma IDH1 c.394C>G (R132G) Mutation in Glioma -IDH1 R132S Glioma IDH1 c.394C>A (R132S) Mutation in Glioma -IDH1 R132H Glioma IDH1 c.395G>A (R132H) Mutation in Glioma -IDH1 R132L Glioma IDH1 c.395G>T (R132L) Mutation in Glioma -IDH2 R172K Glioma IDH2 c.515G>A (R172K) Mutation in Glioma -IDH2 R172M Glioma IDH2 c.515G>T (R172M) Mutation in Glioma -IDH2 R172S Glioma IDH2 c.516G>C (R172S) Mutation in Glioma -IDH2 R172G Glioma IDH2 c.514A>G (R172G) Mutation in Glioma -IDH2 R172W Glioma IDH2 c.514A>T (R172W) Mutation in Glioma -IDH2 R172S Glioma IDH2 c.516G>T (R172S) Mutation in Glioma -ALK Fusions Inflammatory Myofibroblastic Tumor ALK Fusions in Inflammatory Myofibroblastic Tumor -AKT1 E17Ks Non-Small Cell Lung Cancer AKT1 c.49G>A (E17K) Mutations in Non-Small Cell Lung Cancer (NSCLC) -ALK Fusions Non-Small Cell Lung Cancer ALK Fusions in Non-Small Cell Lung Cancer -BRAF Y472C Non-Small Cell Lung Cancer BRAF c.1415A>G (Y472C) Mutation in Non-Small Cell Lung Cancer -BRAF G469L Non-Small Cell Lung Cancer BRAF c.1405_1406delGGinsTT (G469L) Mutation in Non-Small Cell Lung Cancer -BRAF V600E Non-Small Cell Lung Cancer BRAF c.1799T>A (V600E) Mutation in Non-Small Cell Lung Cancer -BRAF G466V Non-Small Cell Lung Cancer BRAF c.1397G>T (G466V) Mutation in Non-Small Cell Lung Cancer -BRAF G469A Non-Small Cell Lung Cancer BRAF c.1406G>C (G469A) Mutation in Non-Small Cell Lung Cancer -BRAF L597V Non-Small Cell Lung Cancer BRAF c.1789C>G (L597V) Mutation in Non-Small Cell Lung Cancer -DDR2 S768R Squamous Cell Carcinoma of the Lung DDR2 c.2304T>A (S768R) Mutation in Squamous Cell Carcinoma of the Lung -EGFR G719As Non-Small Cell Lung Cancer EGFR c.2156G>C (G719A) Mutations in Non-Small Cell Lung Cancer -EGFR Exon 19 Insertion Non-Small Cell Lung Cancer EGFR Exon 19 Insertion in Non-Small Cell Lung Cancer -EGFR G719Cs Non-Small Cell Lung Cancer EGFR c.2155G>T (G719C) Mutations in Non-Small Cell Lung Cancer -EGFR Exon 19 Deletion Non-Small Cell Lung Cancer EGFR Exon 19 Deletion in Non-Small Cell Lung Cancer -EGFR G719Ss Non-Small Cell Lung Cancer EGFR c.2155G>A (G719S) Mutations in Non-Small Cell Lung Cancer -EGFR A763_Y764insFQEA Non-Small Cell Lung Cancer EGFR c.2290_2291ins (A763_Y764insFQEA) Mutation in Non-Small Cell Lung Cancer -EGFR Status Unknown Non-Small Cell Lung cancer EGFR Status Unknown in Non-Small Cell Lung cancer -EGFR exon 18–25 Kinase Domain Duplication (EGFR-KDD) Non-Small Cell Lung Cancer EGFR exon 18–25 Kinase Domain Duplication (EGFR-KDD) in Non-Small Cell Lung Cancer -EGFR T790M Non-Small Cell Lung Cancer EGFR c.2369C>T (T790M) Mutation in Non-Small Cell Lung Cancer -EGFR L858R Non-Small Cell Lung Cancer EGFR c.2573T>G (L858R) Mutation in Non-Small Cell Lung Cancer -EGFR L861Q Non-Small Cell Lung Cancer EGFR c.2582T>A (L861Q) Mutation in Non-Small Cell Lung Cancer -EGFR Exon 20 Insertion Non-Small Cell Lung Cancer EGFR Exon 20 Insertion in Non-Small Cell Lung Cancer -FGFR1 Amplification Squamous Cell Carcinoma of the Lung FGFR1 Amplification in SCC of the Lung -FGFR3 Fusions Lung Cancer FGFR3 Fusions in Lung Cancer -ERBB2 ERBB2 Exon 20 Insertion Non-Small Cell Lung Cancer HER2 (ERBB2) Exon 20 Insertion in Non-Small Cell Lung Cancer -KRAS Q61H Non-Small Cell Lung Cancer KRAS c.183A>C (Q61H) Mutation in Non-Small Cell Lung Cancer -KRAS Q61H Non-Small Cell Lung Cancer KRAS c.183A>T (Q61H) Mutation in Non-Small Cell Lung Cancer -KRAS G12A Non-Small Cell Lung Cancer KRAS c.35G>C (G12A) Mutation in Non-Small Cell Lung Cancer -KRAS G12C Non-Small Cell Lung Cancer KRAS c.34G>T (G12C) Mutation in Non-Small Cell Lung Cancer -KRAS G12D Non-Small Cell Lung Cancer KRAS c.35G>A (G12D) Mutation in Non-Small Cell Lung Cancer -KRAS G12R Non-Small Cell Lung Cancer KRAS c.34G>C (G12R) Mutation in Non-Small Cell Lung Cancer -KRAS G12S Non-Small Cell Lung Cancer KRAS c.34G>A (G12S) Mutation in Non-Small Cell Lung Cancer -KRAS G12V Non-Small Cell Lung Cancer KRAS c.35G>T (G12V) Mutation in Non-Small Cell Lung Cancer -KRAS G13C Non-Small Cell Lung Cancer KRAS c.37G>T (G13C) Mutation in Non-Small Cell Lung Cancer -KRAS G13D Non-Small Cell Lung Cancer KRAS c.38G>A (G13D) Mutation in Non-Small Cell Lung Cancer -KRAS G13R Non-Small Cell Lung Cancer KRAS c.37G>C (G13R) Mutation in Non-Small Cell Lung Cancer -KRAS Q61K Non-Small Cell Lung Cancer KRAS c.181C>A (Q61K) Mutation in Non-Small Cell Lung Cancer -KRAS Q61L Non-Small Cell Lung Cancer KRAS c.182A>T (Q61L) Mutation in Non-Small Cell Lung Cancer -KRAS Q61R Non-Small Cell Lung Cancer KRAS c.182A>G (Q61R) Mutation in Non-Small Cell Lung Cancer -KRAS G13A Non-Small Cell Lung Cancer KRAS c.38G>C (G13A) Mutation in Non-Small Cell Lung Cancer -KRAS G13S Non-Small Cell Lung Cancer KRAS c.37G>A (G13S) Mutation in Non-Small Cell Lung Cancer -MAP2K1 D67Ns Non-Small Cell Lung Cancer MEK1 (MAP2K1) c.199G>A (D67N) Mutations in Non-Small Cell Lung Cancer (NSCLC) -MAP2K1 K57Ns Non-Small Cell Lung Cancer MEK1 (MAP2K1) c.171G>T (K57N) Mutations in Non-Small Cell Lung Cancer (NSCLC) -MAP2K1 Q56P Non-Small Cell Lung Cancer MEK1 (MAP2K1) c.167A>C (Q56P) Mutation in Non-Small Cell Lung Cancer (NSCLC) -MET Exon 14 Skipping Mutations Lung Cancer MET Exon 14 Skipping Mutations in Lung Cancer -MET Amplification Non-Small Cell Lung Cancer MET Amplification in Non-Small Cell Lung Cancer -NRAS Q61K Non-Small Cell Lung Cancer NRAS c.181C>A (Q61K) Mutation in Non-Small Cell Lung Cancer -NRAS Q61L Non-Small Cell Lung Cancer NRAS c.182A>T (Q61L) Mutation in Non-Small Cell Lung Cancer -NRAS Q61R Non-Small Cell Lung Cancer NRAS c.182A>G (Q61R) Mutation in Non-Small Cell Lung Cancer -NRAS Q61H Non-Small Cell Lung Cancer NRAS c.183A>C (Q61H) Mutation in Non-Small Cell Lung Cancer -NRAS Q61H Lung Cancer NRAS c.183A>T (Q61H) Mutation in Lung Cancer -NRAS G12A Non-Small Cell Lung Cancer NRAS c.35G>C (G12A) Mutation in Non-Small Cell Lung Cancer -NRAS G12C Non-Small Cell Lung Cancer NRAS c.34G>T (G12C) Mutation in Non-Small Cell Lung Cancer -NRAS G12D Non-Small Cell Lung Cancer NRAS c.35G>A (G12D) Mutation in Non-Small Cell Lung Cancer -NRAS G12R Non-Small Cell Lung Cancer NRAS c.34G>C (G12R) Mutation in Non-Small Cell Lung Cancer -NRAS G12S Non-Small Cell Lung Cancer NRAS c.34G>A (G12S) Mutation in Non-Small Cell Lung Cancer -NTRK1 Fusions Lung Cancer NTRK1 (TRKA) Fusions in Lung Cancer -PIK3CA H1047L Non-Small Cell Lung Cancer PIK3CA c.3140A>T (H1047L) Mutation in Non-Small Cell Lung Cancer -PIK3CA H1047R Non-Small Cell Lung Cancer PIK3CA c.3140A>G (H1047R) Mutation in Non-Small Cell Lung Cancer -PIK3CA E542K Non-Small Cell Lung Cancer PIK3CA c.1624G>A (E542K) Mutation in Non-Small Cell Lung Cancer -PIK3CA E545K Non-Small Cell Lung Cancer PIK3CA c.1633G>A (E545K) Mutation in Non-Small Cell Lung Cancer -PIK3CA E545Q Non-Small Cell Lung Cancer PIK3CA c.1633G>C (E545Q) Mutation in Non-Small Cell Lung Cancer -PTEN R233* Non-Small Cell Lung Cancer PTEN c.697C>T (R233*) Mutations in Non-Small Cell Lung Cancer (NSCLC) -RET Fusions Non-Small Cell Lung Cancer RET Fusions in Non-Small Cell Lung Cancer -RICTOR Amplification Lung Cancer RICTOR Amplification in Lung Cancer -ROS1 Fusions Non-Small Cell Lung Cancer ROS1 Fusions in Non-Small Cell Lung Cancer -SMO D473H Medulloblastoma SMO c.1417G>C (D473H) Mutation in Medulloblastoma -BRAF V600E Melanoma BRAF c.1799_1800delTGinsAA (V600E) Mutation in Melanoma -BRAF V600D Melanoma BRAF c.1799_1800delTGinsAT (V600D) Mutation in Melanoma -BRAF V600G Melanoma BRAF c.1799T>G (V600G) Mutation in Melanoma -BRAF V600K Melanoma BRAF c.1798_1799delGTinsAA (V600K) Mutation in Melanoma -BRAF V600M Melanoma BRAF c.1798G>A (V600M) Mutation in Melanoma -BRAF V600R Melanoma BRAF c.1798_1799delGTinsAG (V600R) Mutation in Melanoma -BRAF L597R Melanoma BRAF c.1790T>G (L597R) Mutation in Melanoma -BRAF D594G Melanoma BRAF c.1781A>G (D594G) Mutation in Melanoma -BRAF D594V Melanoma BRAF c.1781A>T (D594V) Mutation in Melanoma -BRAF L597Q Melanoma BRAF c.1790T>A (L597Q) Mutation in Melanoma -BRAF L597S Melanoma BRAF c.1789_1790delCTinsTC (L597S) Mutation in Melanoma -BRAF K601E Melanoma BRAF c.1801A>G (K601E) Mutation in Melanoma -BRAF D594N Melanoma BRAF c.1780G>A (D594N) Mutation in Melanoma -BRAF D594N Melanoma BRAF c.1779_1780delTGinsGA (D594N) Mutation in Melanoma -BRAF D594H Melanoma BRAF c.1780G>C (D594H) Mutation in Melanoma -BRAF D594E Melanoma BRAF c.1782T>A (D594E) Mutation in Melanoma -BRAF D594E Melanoma BRAF c.1782T>G (D594E) Mutation in Melanoma -BRAF Fusions Melanoma BRAF Fusions in Melanoma -BRAF V600E Melanoma BRAF c.1799T>A (V600E) Mutation in Melanoma -BRAF L597V Melanoma BRAF c.1789C>G (L597V) Mutation in Melanoma -CTNNB1 S37F Melanoma CTNNB1(beta-catenin) c.110C>T (S37F) Mutation in Melanoma -CTNNB1 S37Y Melanoma CTNNB1 (beta-catenin) c.110C>A (S37Y) Mutation in Melanoma -CTNNB1 S45F Melanoma CTNNB1 (beta-catenin) c.134C>T (S45F) Mutation in Melanoma -CTNNB1 S45P Melanoma CTNNB1 (beta-catenin) c.133T>C (S45P) Mutation in Melanoma -CTNNB1 S45Y Melanoma CTNNB1 (beta-catenin) c.134C>A (S45Y) Mutation in Melanoma -GNA11 Q209P Melanoma GNA11 c.626A>C (Q209P) Mutation in Melanoma -GNA11 R183C Melanoma GNA11 c.546_547delCCinsTT (R183C) Mutation in Melanoma -GNA11 R183C Melanoma GNA11 c.547C>T (R183C) Mutation in Melanoma -GNA11 Q209L Melanoma GNA11 c.626A>T (Q209L) Mutation in Melanoma -GNAQ Q209L Melanoma GNAQ c.626A>T (Q209L) Mutation in Melanoma -GNAQ Q209P Melanoma GNAQ c.626A>C (Q209P) Mutation in Melanoma -GNAQ Q209R Melanoma GNAQ c.626A>G (Q209R) Mutation in Melanoma -GNAQ R183Q Melanoma GNAQ c.548G>A (R183Q) Mutation in Melanoma -KIT W557R Melanoma KIT c.1669T>A (W557R) Mutation in Melanoma -KIT W557R Melanoma KIT c.1669T>C (W557R) Mutation in Melanoma -KIT V559A Melanoma KIT c.1676T>C (V559A) Mutation in Melanoma -KIT V559D Melanoma KIT c.1676T>A (V559D) Mutation in Melanoma -Other KIT mutations Melanoma Other KIT mutations in Melanoma -KIT Amplification Melanoma KIT Amplification in Melanoma -KIT D816H Melanoma KIT c.2446G>C (D816H) Mutation in Melanoma -KIT K642E Melanoma KIT c.1924A>G (K642E) Mutation in Melanoma -KIT L576P Melanoma KIT c.1727T>C (L576P) Mutation in Melanoma -MAP2K1 F53L Melanoma MEK1 (MAP2K1) c.157T>C (F53L) Mutation in Melanoma -MAP2K1 I111S Melanoma MEK1 (MAP2K1) c.332T>G (I111S) Mutation in Melanoma -MAP2K1 C121S Melanoma MEK1 (MAP2K1) c.362G>C (C121S) Mutation in Melanoma -MAP2K1 P124L Melanoma MEK1 (MAP2K1) c.371C>T (P124L) Mutation in Melanoma -MAP2K1 P124S Melanoma MEK1 (MAP2K1) c.370C>T (P124S) Mutation in Melanoma -MAP2K1 E203K Melanoma MEK1 (MAP2K1) c.607G>A (E203K) Mutation in Melanoma -MAP2K1 P264S Melanoma MEK1 (MAP2K1) c.790C>T (P264S) Mutation in Melanoma -MAP2K1 N382H Melanoma MEK1 (MAP2K1) c.1144A>C (N382H) Mutation in Melanoma -NF1 Mutations Melanoma NF1 Mutations in Melanoma -NRAS G13C Melanoma NRAS c.37G>T (G13C) Mutation in Melanoma -NRAS Q61K Melanoma NRAS c.181C>A (Q61K) Mutation in Melanoma -NRAS Q61L Melanoma NRAS c.182A>T (Q61L) Mutation in Melanoma -NRAS Q61R Melanoma NRAS c.182A>G (Q61R) Mutation in Melanoma -NRAS Q61H Melanoma NRAS c.183A>C (Q61H) Mutation in Melanoma -NRAS Q61H Melanoma NRAS c.183A>T (Q61H) Mutation in Melanoma -NRAS Q61R Melanoma NRAS c.182_183delAAinsGG (Q61R) Mutation in Melanoma -NRAS Q61L Melanoma NRAS c.182_183delAAinsTG (Q61L) Mutation in Melanoma -NRAS G12A Melanoma NRAS c.35G>C (G12A) Mutation in Melanoma -NRAS G12C Melanoma NRAS c.34G>T (G12C) Mutation in Melanoma -NRAS G12D Melanoma NRAS c.35G>A (G12D) Mutation in Melanoma -NRAS G12R Melanoma NRAS c.34G>C (G12R) Mutation in Melanoma -NRAS G12S Melanoma NRAS c.34G>A (G12S) Mutation in Melanoma -NRAS G12V Melanoma NRAS c.35G>T (G12V) Mutation in Melanoma -NRAS G13A Melanoma NRAS c.38G>C (G13A) Mutation in Melanoma -NRAS G13D Melanoma NRAS c.38G>A (G13D) Mutation in Melanoma -NRAS G13R Melanoma NRAS c.37G>C (G13R) Mutation in Melanoma -NRAS G13V Melanoma NRAS c.38G>T (G13V) Mutation in Melanoma -NRAS Q61E Melanoma NRAS c.181C>G (Q61E) Mutation in Melanoma -NRAS Q61P Melanoma NRAS c.182A>C (Q61P) Mutation in Melanoma -ASXL1 Mutations Myelodysplastic Syndromes ASXL1 Mutations in Myelodysplastic Syndromes -BCOR Mutations Myelodysplastic Syndromes BCOR Mutations in Myelodysplastic Syndromes -DNMT3A Mutations Myelodysplastic Syndromes DNMT3A Mutations in Myelodysplastic Syndromes -ETV6 Mutations Myelodysplastic Syndromes ETV6 Mutations in Myelodysplastic Syndromes -EZH2 Mutations Myelodysplastic Syndromes EZH2 Mutations in Myelodysplastic Syndromes -NF1 Mutations Myelodysplastic Syndromes NF1 Mutations in Myelodysplastic Syndromes -RUNX1 Mutations Myelodysplastic Syndromes RUNX1 Mutations in Myelodysplastic Syndromes -SF3B1 Mutations Myelodysplastic Syndromes SF3B1 Mutations in Myelodysplastic Syndromes -SRSF2 Mutations Myelodysplastic Syndromes SRSF2 Mutations in Myelodysplastic Syndromes -STAG2 Mutations Myelodysplastic Syndromes STAG2 Mutations in Myelodysplastic Syndromes -TET2 Mutations Myelodysplastic Syndromes TET2 Mutations in Myelodysplastic Syndromes -TP53 Mutations Myelodysplastic Syndromes TP53 Mutations in Myelodysplastic Syndromes -U2AF1 Mutations Myelodysplastic Syndromes U2AF1 Mutations in Myelodysplastic Syndromes -ZRSR2 Mutations Myelodysplastic Syndromes ZRSR2 Mutations in Myelodysplastic Syndromes -ALK D1091N Neuroblastoma ALK c.3271G>A (D1091N) Mutation in Neuroblastoma -ALK T1151M Neuroblastoma ALK c.3452C>T (T1151M) Mutation in Neuroblastoma -ALK I1171N Neuroblastoma ALK c.3512T>A (I1171N) Mutation in Neuroblastoma -ALK F1174C Neuroblastoma ALK c.3521T>G (F1174C) Mutation in Neuroblastoma -ALK F1174I Neuroblastoma ALK c.3520T>A (F1174I) Mutation in Neuroblastoma -ALK F1174L Neuroblastoma ALK c.3522C>A (F1174L) Mutation in Neuroblastoma -ALK F1174V Neuroblastoma ALK c.3520T>G (F1174V) Mutation in Neuroblastoma -ALK F1245C Neuroblastoma ALK c.3734T>G (F1245C) Mutation in Neuroblastoma -ALK F1245L Neuroblastoma ALK c.3735C>G (F1245L) Mutation in Neuroblastoma -ALK F1245V Neuroblastoma ALK c.3733T>G (F1245V) Mutation in Neuroblastoma -ALK R1275Q Neuroblastoma ALK c.3824G>A (R1275Q) Mutation in Neuroblastoma -ALK Y1278S Neuroblastoma ALK c.3833A>C (Y1278S) Mutation in Neuroblastoma -BRAF L597R Ovarian Cancer BRAF c.1790T>G (L597R) Mutation in Ovarian Cancer -BRAF V600E Ovarian Cancer BRAF c.1799T>A (V600E) Mutation in Ovarian Cancer -KRAS G12A Ovarian Cancer KRAS c.35G>C (G12A) Mutation in Ovarian Cancer -KRAS G12C Ovarian Cancer KRAS c.34G>T (G12C) Mutation in Ovarian Cancer -KRAS G12D Ovarian Cancer KRAS c.35G>A (G12D) Mutation in Ovarian Cancer -KRAS G12R Ovarian Cancer KRAS c.34G>C (G12R) Mutation in Ovarian Cancer -KRAS G12V Ovarian Cancer KRAS c.35G>T (G12V) Mutation in Ovarian Cancer -KRAS G13D Ovarian Cancer KRAS c.38G>A (G13D) Mutation in Ovarian Cancer -PIK3CA H1047L Ovarian Cancer PIK3CA c.3140A>T (H1047L) Mutation in Ovarian Cancer -PIK3CA H1047R Ovarian Cancer PIK3CA c.3140A>G (H1047R) Mutation in Ovarian Cancer -PIK3CA Q546K Ovarian Cancer PIK3CA c.1636C>A (Q546K) Mutation in Ovarian Cancer -PIK3CA E542K Ovarian Cancer PIK3CA c.1624G>A (E542K) Mutation in Ovarian Cancer -PIK3CA E545K Ovarian Cancer PIK3CA c.1633G>A (E545K) Mutation in Ovarian Cancer -PTEN R130* Ovarian Cancer PTEN c.388C>T (R130*) Mutation in Ovarian Cancer -PTEN N323fs Ovarian Cancer PTEN c.968dupA (N323fs*2) Mutation in Ovarian Cancer -PTEN N323fs Ovarian Cancer PTEN c.968delA (N323fs*21) Mutation in Ovarian Cancer -PTEN P248fs Ovarian Cancer PTEN c.741dupA (P248fs*5) Mutation in Ovarian Cancer -PTEN R130fs Ovarian Cancer PTEN c.389delG (R130fs*4) Mutation in Ovarian Cancer -PTEN R130Q Ovarian Cancer PTEN c.389G>A (R130Q) Mutation in Ovarian Cancer -PTEN R130G Ovarian Cancer PTEN c.388C>G (R130G) Mutation in Ovarian Cancer -ALK Exon Deletion Rhabdomyosarcoma ALK Exon Deletion in Rhabdomyosarcoma -ALK D1225N Rhabdomyosarcoma ALK c.3673G>A (D1225N) Mutation in Rhabdomyosarcoma -KIT W557R Thymic Carcinoma KIT c. 1669T>C (W557R) Mutation in Thymic Carcinoma -KIT V559A Thymic Carcinoma KIT c. 1676T>C (V559A) Mutation in Thymic Carcinoma -KIT D820E Thymic Carcinoma KIT c.2460T>A (D820E) Mutation in Thymic Carcinoma -KIT H697Y Thymic Carcinoma KIT c.2089C>T (H697Y) Mutation in Thymic Carcinoma -KIT P577_D579del Thymic Carcinoma KIT c.1730_1738del (P577_D579del) Mutation in Thymic Carcinoma -KIT V560del Thymic Carcinoma KIT c.1679_1681del (V560del) Mutation in Thymic Carcinoma -KIT Y553N Thymic Carcinoma KIT c.1657T>A (Y553N) Mutation in Thymic Carcinoma -KIT E490K Thymic Carcinoma KIT c.1468G>A (E490K) Mutation in Thymic Carcinoma -KIT L576P Thymic Carcinoma KIT c.1727T>C (L576P) Mutation in Thymic Carcinoma -AKAP-BRAF Translocation Thyroid Cancer AKAP-BRAF Translocation in Thyroid Cancer -BRAF V600E Thyroid Cancer BRAF c.1799T>A (V600E) Mutation in Thyroid Cancer -HRAS G12R Thyroid Cancer HRAS c.34G>C (G12R) Mutation in Thyroid Cancer -HRAS G12V Thyroid Cancer HRAS c.35G>T (G12V) Mutation in Thyroid Cancer -HRAS G13C Thyroid Cancer HRAS c.37G>T (G13C) Mutation in Thyroid Cancer -HRAS G13R Thyroid Cancer HRAS c.37G>C (G13R) Mutation in Thyroid Cancer -HRAS Q61R Thyroid Cancer HRAS c.182A>G (Q61R) Mutation in Thyroid Cancer -KRAS A146V Thyroid Cancer KRAS c.437C>T (A146V) Mutation in Thyroid Cancer -KRAS Q61P Thyroid Cancer KRAS c.182A>C (Q61P) Mutation in Thyroid Cancer -KRAS G12A Thyroid Cancer KRAS c.35G>C (G12A) Mutation in Thyroid Cancer -KRAS G12C Thyroid Cancer KRAS c.34G>T (G12C) Mutation in Thyroid Cancer -KRAS G12D Thyroid Cancer KRAS c.35G>A (G12D) Mutation in Thyroid Cancer -KRAS G12R Thyroid Cancer KRAS c.34G>C (G12R) Mutation in Thyroid Cancer -KRAS G12S Thyroid Cancer KRAS c.34G>A (G12S) Mutation in Thyroid Cancer -KRAS G12V Thyroid Cancer KRAS c.35G>T (G12V) Mutation in Thyroid Cancer -KRAS G13D Thyroid Cancer KRAS c.38G>A (G13D) Mutation in Thyroid Cancer -KRAS G13R Thyroid Cancer KRAS c.37G>C (G13R) Mutation in Thyroid Cancer -KRAS Q61K Thyroid Cancer KRAS c.181C>A (Q61K) Mutation in Thyroid Cancer -KRAS Q61L Thyroid Cancer KRAS c.182A>T (Q61L) Mutation in Thyroid Cancer -KRAS Q61R Thyroid Cancer KRAS c.182A>G (Q61R) Mutation in Thyroid Cancer -KRAS G13S Thyroid Cancer KRAS c.37G>A (G13S) Mutation in Thyroid Cancer -NRAS Q61K Thyroid Cancer NRAS c.181C>A (Q61K) Mutation in Thyroid Cancer -NRAS Q61R Thyroid Cancer NRAS c.182A>G (Q61R) Mutation in Thyroid Cancer -RET C634 Mutations Thyroid Cancer RET C634 Mutations in Thyroid Cancer -RET Fusions Thyroid Cancer RET Fusions in Thyroid Cancer -RET M918T Mutations Thyroid Cancer RET M918T Mutations in Thyroid Cancer diff --git a/core/src/main/resources/os_plot.txt b/core/src/main/resources/os_plot.txt deleted file mode 100644 index 51d4727dfc5..00000000000 --- a/core/src/main/resources/os_plot.txt +++ /dev/null @@ -1,25 +0,0 @@ -library(Cairo) -library(survival) -attach(df) - -# Perform Overall Survival Analysis -os_surv = Surv (df$OS_MONTHS, df$OS_STATUS) -two_colors = c("blue", "red") -os_surv_fit = survfit(os_surv ~ GENE_SET_ALTERED) - -if (length(unique(df$GENE_SET_ALTERED))==1) { - # Plot Single Group - plot (os_surv_fit, yscale=100, xlab="Months Survival", ylab="% Surviving", cex.main=1.0, cex.axis=1.0, cex.lab=1.0, font=1) -} else { - # Plot Two Groups - os_log_rank = survdiff (os_surv ~ GENE_SET_ALTERED) - os_p_val <- 1 - pchisq(os_log_rank$chisq, length(os_log_rank$n) - 1) - - # Plot it - plot (os_surv_fit, col=two_colors, yscale=100, xlab="Months Survival", ylab="% Surviving", cex.main=1.0, cex.axis=1.0, cex.lab=1.0, font=1) - strata = names (os_surv_fit$strata) - strata_english = gsub("GENE_SET_ALTERED=TRUE", "Gene Set Altered", strata) - strata_english = gsub("GENE_SET_ALTERED=FALSE", "Gene Set Not Altered", strata_english) - legend ("topright", bty="n", strata_english, fill=two_colors) - legend ("topright", bty="n", paste("Logrank test p-value: ", sprintf("%.6f", os_p_val)), inset=c(0.0, 0.1)) -} \ No newline at end of file diff --git a/core/src/main/resources/sample_data/cancers.txt b/core/src/main/resources/sample_data/cancers.txt deleted file mode 100644 index e6077d7d051..00000000000 --- a/core/src/main/resources/sample_data/cancers.txt +++ /dev/null @@ -1,22 +0,0 @@ -BLCA : Bladder Urothelial Carcinoma -BRCA : Breast invasive carcinoma -CESC : Cervical Squamous Cell Carcinoma -COAD : Colon adenocarcinoma -GBM : Glioblastoma multiforme -HNSC : Head and Neck squamous cell carcinoma -KIRC : Kidney renal clear cell carcinoma -KIRP : Kidney renal papillary cell carcinoma -LAML : Acute Myeloid Leukemia -LGG : Brain Lower Grade Glioma -LIHC : Liver hepatocellular carcinoma -LUAD : Lung adenocarcinoma -LUSC : Lung squamous cell carcinoma -OV : Ovarian serous cystadenocarcinoma -PAAD : Pancreatic adenocarcinoma -PRAD : Prostate adenocarcinoma -READ : Rectum adenocarcinoma -SARC: Sarcoma -STAD : Stomach adenocarcinoma -THCA : Thyroid carcinoma -UCEC : Uterine Corpus Endometrioid Carcinoma -COADREAD : Colon and Rectum adenocarcinoma \ No newline at end of file diff --git a/core/src/main/resources/sample_data/gbm/GBM_clinical_portal_20110210.txt b/core/src/main/resources/sample_data/gbm/GBM_clinical_portal_20110210.txt deleted file mode 100644 index 4ea21416519..00000000000 --- a/core/src/main/resources/sample_data/gbm/GBM_clinical_portal_20110210.txt +++ /dev/null @@ -1,455 +0,0 @@ -CASE_ID OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TCGA-02-0001 1:DECEASED 11.60547945 1:Recurred 4.504109589 -TCGA-02-0003 1:DECEASED 4.734246575 1:Recurred 1.315068493 -TCGA-02-0004 1:DECEASED 11.34246575 1:Recurred 10.32328767 -TCGA-02-0006 1:DECEASED 18.34520548 1:Recurred 9.928767123 -TCGA-02-0007 1:DECEASED 23.17808219 1:Recurred 17.03013699 -TCGA-02-0009 1:DECEASED 10.58630137 1:Recurred 8.679452055 -TCGA-02-0010 1:DECEASED 35.40821918 1:Recurred 11.53972603 -TCGA-02-0011 1:DECEASED 20.71232877 1:Recurred 4.734246575 -TCGA-02-0014 1:DECEASED 82.55342466 NA NA -TCGA-02-0015 1:DECEASED 20.61369863 1:Recurred 14.99178082 -TCGA-02-0016 0:LIVING 55.85753425 1:Recurred 55.85753425 -TCGA-02-0021 1:DECEASED 77.62191781 1:Recurred 8.350684931 -TCGA-02-0023 1:DECEASED 20.12054795 1:Recurred 14.30136986 -TCGA-02-0024 1:DECEASED 53.0630137 1:Recurred 46.02739726 -TCGA-02-0025 1:DECEASED 42.73972603 1:Recurred 21.56712329 -TCGA-02-0026 1:DECEASED 24.59178082 1:Recurred 15.1890411 -TCGA-02-0027 1:DECEASED 12.16438356 1:Recurred 8.449315068 -TCGA-02-0028 1:DECEASED 90.57534247 1:Recurred 63.15616438 -TCGA-02-0033 1:DECEASED 2.82739726 1:Recurred 1.052054795 -TCGA-02-0034 1:DECEASED 14.1369863 1:Recurred 12.69041096 -TCGA-02-0037 1:DECEASED 3.583561644 1:Recurred 1.216438356 -TCGA-02-0038 1:DECEASED 10.71780822 1:Recurred 7.824657534 -TCGA-02-0039 1:DECEASED 10.52054795 1:Recurred 3.353424658 -TCGA-02-0043 1:DECEASED 18.27945205 1:Recurred 9.271232877 -TCGA-02-0046 1:DECEASED 6.838356164 1:Recurred 6.378082192 -TCGA-02-0047 1:DECEASED 14.69589041 1:Recurred 1.873972603 -TCGA-02-0048 1:DECEASED 3.189041096 1:Recurred 0.756164384 -TCGA-02-0051 1:DECEASED 15.05753425 1:Recurred 2.893150685 -TCGA-02-0052 1:DECEASED 12.59178082 1:Recurred 6.706849315 -TCGA-02-0054 1:DECEASED 6.542465753 1:Recurred 2.367123288 -TCGA-02-0055 1:DECEASED 2.498630137 1:Recurred 0.197260274 -TCGA-02-0057 1:DECEASED 19.85753425 1:Recurred 15.55068493 -TCGA-02-0058 1:DECEASED 8.350684931 1:Recurred 5.621917808 -TCGA-02-0059 1:DECEASED 9.567123288 1:Recurred 0.690410959 -TCGA-02-0060 1:DECEASED 6.016438356 1:Recurred 6.016438356 -TCGA-02-0064 1:DECEASED 19.7260274 1:Recurred 16.30684932 -TCGA-02-0068 1:DECEASED 26.43287671 1:Recurred 5.753424658 -TCGA-02-0069 0:LIVING 28.70136986 1:Recurred 28.70136986 -TCGA-02-0070 0:LIVING 25.05205479 1:Recurred 25.05205479 -TCGA-02-0071 1:DECEASED 5.490410959 1:Recurred 0.263013699 -TCGA-02-0074 1:DECEASED 10.19178082 1:Recurred 5.063013699 -TCGA-02-0075 1:DECEASED 20.84383562 1:Recurred 11.04657534 -TCGA-02-0079 1:DECEASED 27.22191781 1:Recurred 26.20273973 -TCGA-02-0080 1:DECEASED 89.72054795 1:Recurred 76.89863014 -TCGA-02-0083 1:DECEASED 22.71780822 1:Recurred 15.1890411 -TCGA-02-0084 1:DECEASED 12.62465753 NA NA -TCGA-02-0085 1:DECEASED 51.28767123 1:Recurred 32.08767123 -TCGA-02-0086 1:DECEASED 8.810958904 1:Recurred 3.189041096 -TCGA-02-0087 0:LIVING 57.76438356 1:Recurred 57.76438356 -TCGA-02-0089 1:DECEASED 16.93150685 1:Recurred 11.76986301 -TCGA-02-0099 1:DECEASED 3.484931507 NA NA -TCGA-02-0102 1:DECEASED 26.99178082 1:Recurred 14.79452055 -TCGA-02-0104 1:DECEASED 64.99726027 1:Recurred 47.90136986 -TCGA-02-0106 1:DECEASED 11.67123288 1:Recurred 6.410958904 -TCGA-02-0107 1:DECEASED 17.65479452 1:Recurred 4.8 -TCGA-02-0111 1:DECEASED 23.14520548 1:Recurred 2.432876712 -TCGA-02-0113 0:LIVING 92.61369863 1:Recurred 51.25479452 -TCGA-02-0114 1:DECEASED 99.94520548 1:Recurred 75.48493151 -TCGA-02-0115 1:DECEASED 15.64931507 1:Recurred 2.991780822 -TCGA-02-0116 1:DECEASED 48.95342466 1:Recurred 40.47123288 -TCGA-02-0258 1:DECEASED 16.5369863 1:Recurred 16.5369863 -TCGA-02-0260 1:DECEASED 16.89863014 NA NA -TCGA-02-0266 1:DECEASED 17.68767123 1:Recurred 9.632876712 -TCGA-02-0269 1:DECEASED 10.75068493 1:Recurred 3.254794521 -TCGA-02-0271 1:DECEASED 14.46575342 NA NA -TCGA-02-0281 1:DECEASED 3.978082192 NA NA -TCGA-02-0285 1:DECEASED 13.8739726 NA NA -TCGA-02-0289 1:DECEASED 14.20273973 1:Recurred 8.021917808 -TCGA-02-0290 1:DECEASED 15.94520548 1:Recurred 12.29589041 -TCGA-02-0317 1:DECEASED 12.23013699 1:Recurred 7.824657534 -TCGA-02-0321 1:DECEASED 9.863013699 1:Recurred 2.4 -TCGA-02-0324 1:DECEASED 7.693150685 1:Recurred 5.35890411 -TCGA-02-0325 1:DECEASED 10.61917808 1:Recurred 9.336986301 -TCGA-02-0326 1:DECEASED 7.331506849 1:Recurred 0.164383562 -TCGA-02-0330 1:DECEASED 15.91232877 1:Recurred 3.945205479 -TCGA-02-0332 1:DECEASED 25.70958904 1:Recurred 14.4 -TCGA-02-0333 1:DECEASED 4.37260274 1:Recurred 0.131506849 -TCGA-02-0337 1:DECEASED 25.11780822 1:Recurred 22.71780822 -TCGA-02-0338 1:DECEASED 10.58630137 1:Recurred 5.490410959 -TCGA-02-0339 1:DECEASED 12.39452055 1:Recurred 4.865753425 -TCGA-02-0422 1:DECEASED 14.49863014 1:Recurred 4.109589041 -TCGA-02-0430 1:DECEASED 10.55342466 NA NA -TCGA-02-0432 1:DECEASED 47.11232877 1:Recurred 34.61917808 -TCGA-02-0439 1:DECEASED 0.657534247 1:Recurred 0.42739726 -TCGA-02-0440 1:DECEASED 11.34246575 1:Recurred 6.969863014 -TCGA-02-0446 1:DECEASED 9.238356164 1:Recurred 0.493150685 -TCGA-02-0451 1:DECEASED 16.17534247 1:Recurred 14.03835616 -TCGA-02-0456 1:DECEASED 3.353424658 1:Recurred 0.394520548 -TCGA-02-2466 1:DECEASED 16.8 1:Recurred 4.208219178 -TCGA-02-2470 1:DECEASED 12.92054795 1:Recurred 5.983561644 -TCGA-02-2483 0:LIVING 15.28767123 0:DiseaseFree 15.28767123 -TCGA-02-2485 0:LIVING 15.41917808 1:Recurred 6.082191781 -TCGA-02-2486 0:LIVING 16.17534247 0:DiseaseFree 16.17534247 -TCGA-06-0119 NA NA NA NA -TCGA-06-0121 NA NA NA NA -TCGA-06-0122 1:DECEASED 6.147945205 NA NA -TCGA-06-0124 1:DECEASED 20.35068493 NA NA -TCGA-06-0125 1:DECEASED 47.60547945 1:Recurred 26.20273973 -TCGA-06-0126 1:DECEASED 6.904109589 NA NA -TCGA-06-0127 1:DECEASED 3.945205479 1:Recurred 2.95890411 -TCGA-06-0128 1:DECEASED 22.71780822 1:Recurred 6.21369863 -TCGA-06-0129 1:DECEASED 33.66575342 1:Recurred 4.832876712 -TCGA-06-0130 1:DECEASED 12.95342466 1:Recurred 8.021917808 -TCGA-06-0132 1:DECEASED 25.34794521 1:Recurred 15.84657534 -TCGA-06-0133 1:DECEASED 14.30136986 1:Recurred 2.564383562 -TCGA-06-0137 1:DECEASED 26.69589041 1:Recurred 16.0109589 -TCGA-06-0138 1:DECEASED 24.23013699 1:Recurred 12.95342466 -TCGA-06-0139 1:DECEASED 11.90136986 1:Recurred 4.997260274 -TCGA-06-0140 NA NA NA NA -TCGA-06-0141 1:DECEASED 10.29041096 1:Recurred 4.767123288 -TCGA-06-0142 NA NA NA NA -TCGA-06-0143 1:DECEASED 11.7369863 1:Recurred 8.679452055 -TCGA-06-0145 1:DECEASED 2.334246575 NA NA -TCGA-06-0146 1:DECEASED 20.08767123 1:Recurred 17.42465753 -TCGA-06-0147 1:DECEASED 17.78630137 NA NA -TCGA-06-0148 1:DECEASED 10.09315068 1:Recurred 6.180821918 -TCGA-06-0149 1:DECEASED 8.580821918 1:Recurred 6.673972603 -TCGA-06-0150 NA NA NA NA -TCGA-06-0151 NA NA NA NA -TCGA-06-0152 1:DECEASED 12.32876712 1:Recurred 9.830136986 -TCGA-06-0154 1:DECEASED 13.90684932 1:Recurred 6.805479452 -TCGA-06-0155 1:DECEASED 10.45479452 1:Recurred 8.416438356 -TCGA-06-0156 1:DECEASED 5.852054795 NA NA -TCGA-06-0157 1:DECEASED 3.189041096 NA NA -TCGA-06-0158 1:DECEASED 10.81643836 1:Recurred 2.95890411 -TCGA-06-0159 NA NA NA NA -TCGA-06-0160 NA NA NA NA -TCGA-06-0162 1:DECEASED 3.419178082 NA NA -TCGA-06-0164 1:DECEASED 56.87671233 1:Recurred 46.94794521 -TCGA-06-0165 NA NA NA NA -TCGA-06-0166 1:DECEASED 5.852054795 1:Recurred 2.169863014 -TCGA-06-0167 NA NA NA NA -TCGA-06-0168 1:DECEASED 19.66027397 1:Recurred 15.15616438 -TCGA-06-0169 1:DECEASED 3.287671233 1:Recurred 3.024657534 -TCGA-06-0171 1:DECEASED 13.11780822 1:Recurred 3.846575342 -TCGA-06-0173 1:DECEASED 4.471232877 NA NA -TCGA-06-0174 1:DECEASED 3.221917808 1:Recurred 1.545205479 -TCGA-06-0175 1:DECEASED 4.043835616 1:Recurred 1.282191781 -TCGA-06-0176 0:LIVING 51.32054795 1:Recurred 1.347945205 -TCGA-06-0177 1:DECEASED 4.142465753 NA NA -TCGA-06-0178 0:LIVING 53.98356164 1:Recurred 6.312328767 -TCGA-06-0179 1:DECEASED 20.25205479 1:Recurred 8.219178082 -TCGA-06-0182 1:DECEASED 3.649315068 NA NA -TCGA-06-0184 0:LIVING 40.37260274 0:DiseaseFree 40.37260274 -TCGA-06-0185 0:LIVING 37.01917808 1:Recurred 23.37534247 -TCGA-06-0187 1:DECEASED 27.22191781 1:Recurred 17.45753425 -TCGA-06-0188 0:LIVING 28.47123288 0:DiseaseFree 28.47123288 -TCGA-06-0189 1:DECEASED 15.41917808 NA NA -TCGA-06-0190 1:DECEASED 10.42191781 1:Recurred 2.893150685 -TCGA-06-0192 0:LIVING 18.27945205 0:DiseaseFree 18.27945205 -TCGA-06-0194 1:DECEASED 4.668493151 1:Recurred 4.109589041 -TCGA-06-0195 1:DECEASED 7.397260274 1:Recurred 4.832876712 -TCGA-06-0197 1:DECEASED 5.523287671 1:Recurred 1.545205479 -TCGA-06-0201 1:DECEASED 0.394520548 NA NA -TCGA-06-0206 1:DECEASED 7.62739726 1:Recurred 3.484931507 -TCGA-06-0208 1:DECEASED 8.383561644 1:Recurred 4.865753425 -TCGA-06-0209 1:DECEASED 7.594520548 NA NA -TCGA-06-0210 1:DECEASED 7.397260274 1:Recurred 2.202739726 -TCGA-06-0211 1:DECEASED 11.83561644 1:Recurred 1.742465753 -TCGA-06-0213 1:DECEASED 0.526027397 NA NA -TCGA-06-0214 1:DECEASED 15.02465753 1:Recurred 1.578082192 -TCGA-06-0216 1:DECEASED 24.16438356 1:Recurred 5.753424658 -TCGA-06-0219 1:DECEASED 0.690410959 NA NA -TCGA-06-0221 1:DECEASED 19.82465753 1:Recurred 8.547945205 -TCGA-06-0237 1:DECEASED 13.64383562 NA NA -TCGA-06-0238 1:DECEASED 13.28219178 1:Recurred 10.22465753 -TCGA-06-0240 NA NA NA NA -TCGA-06-0241 0:LIVING 14.95890411 1:Recurred 6.443835616 -TCGA-06-0394 1:DECEASED 10.81643836 1:Recurred 2.860273973 -TCGA-06-0397 1:DECEASED 3.978082192 NA NA -TCGA-06-0402 1:DECEASED 0.263013699 NA NA -TCGA-06-0409 1:DECEASED 72.36164384 1:Recurred 10.98082192 -TCGA-06-0410 1:DECEASED 4.668493151 NA NA -TCGA-06-0412 1:DECEASED 9.567123288 1:Recurred 4.273972603 -TCGA-06-0413 1:DECEASED 3.156164384 NA NA -TCGA-06-0414 1:DECEASED 35.11232877 1:Recurred 33.30410959 -TCGA-06-0644 0:LIVING 12.32876712 1:Recurred 2.794520548 -TCGA-06-0645 1:DECEASED 5.753424658 NA NA -TCGA-06-0646 1:DECEASED 5.753424658 1:Recurred 2.95890411 -TCGA-06-0648 1:DECEASED 9.764383562 1:Recurred 6.608219178 -TCGA-06-0649 1:DECEASED 2.104109589 NA NA -TCGA-06-0673 NA NA NA NA -TCGA-06-0675 NA NA NA NA -TCGA-06-0676 NA NA NA NA -TCGA-06-0678 NA NA NA NA -TCGA-06-0680 NA NA NA NA -TCGA-06-0681 NA NA NA NA -TCGA-06-0686 0:LIVING 9.369863014 1:Recurred 5.22739726 -TCGA-06-0743 0:LIVING 22.29041096 1:Recurred 5.753424658 -TCGA-06-0744 0:LIVING 19.52876712 0:DiseaseFree 19.52876712 -TCGA-06-0745 1:DECEASED 7.824657534 1:Recurred 2.991780822 -TCGA-06-0747 1:DECEASED 2.695890411 NA NA -TCGA-06-0749 1:DECEASED 2.663013699 NA NA -TCGA-06-0750 1:DECEASED 0.920547945 NA NA -TCGA-06-0875 0:LIVING 9.17260274 1:Recurred 9.17260274 -TCGA-06-0876 0:LIVING 8.909589041 0:DiseaseFree 8.909589041 -TCGA-06-0877 0:LIVING 6.706849315 0:DiseaseFree 6.706849315 -TCGA-06-0878 0:LIVING 7.167123288 1:Recurred 2.169863014 -TCGA-06-0879 0:LIVING 22.98082192 1:Recurred 22.98082192 -TCGA-06-0881 0:LIVING 5.852054795 1:Recurred 4.635616438 -TCGA-06-0882 0:LIVING 5.424657534 0:DiseaseFree 5.424657534 -TCGA-06-1084 0:LIVING 7.430136986 1:Recurred 6.838356164 -TCGA-06-1086 1:DECEASED 6.838356164 NA NA -TCGA-06-1087 1:DECEASED 4.043835616 1:Recurred 3.583561644 -TCGA-06-1800 1:DECEASED 26.79452055 1:Recurred 24.65753425 -TCGA-06-1801 0:LIVING 8.646575342 1:Recurred 7.62739726 -TCGA-06-1802 0:LIVING 7.857534247 1:Recurred 2.663013699 -TCGA-06-1805 0:LIVING 4.175342466 0:DiseaseFree 4.175342466 -TCGA-06-2557 1:DECEASED 1.084931507 NA NA -TCGA-06-2558 1:DECEASED 12.49315068 NA NA -TCGA-06-2559 1:DECEASED 4.898630137 NA NA -TCGA-06-2561 0:LIVING 9.271232877 1:Recurred 2.564383562 -TCGA-06-2562 0:LIVING 2.82739726 1:Recurred 5.030136986 -TCGA-06-2563 0:LIVING NA 0:DiseaseFree NA -TCGA-06-2564 0:LIVING 5.950684932 0:DiseaseFree 5.950684932 -TCGA-06-2565 0:LIVING 6.805479452 1:Recurred 5.852054795 -TCGA-06-2566 1:DECEASED 5.983561644 NA NA -TCGA-06-2567 1:DECEASED 4.37260274 NA NA -TCGA-06-2569 0:LIVING 0.42739726 0:DiseaseFree 0.42739726 -TCGA-06-2570 0:LIVING 9.369863014 0:DiseaseFree 9.369863014 -TCGA-08-0244 1:DECEASED 22.68493151 1:Recurred 15.87945205 -TCGA-08-0245 1:DECEASED 37.84109589 1:Recurred 15.22191781 -TCGA-08-0246 1:DECEASED 4.175342466 1:Recurred 3.024657534 -TCGA-08-0344 1:DECEASED 115.8575342 1:Recurred 61.80821918 -TCGA-08-0345 1:DECEASED 1.742465753 NA NA -TCGA-08-0346 1:DECEASED 8.416438356 1:Recurred 2.465753425 -TCGA-08-0347 1:DECEASED 25.70958904 1:Recurred 1.939726027 -TCGA-08-0348 1:DECEASED 12.16438356 1:Recurred 6.476712329 -TCGA-08-0349 1:DECEASED 9.797260274 1:Recurred 3.024657534 -TCGA-08-0350 1:DECEASED 29.19452055 1:Recurred 14.4 -TCGA-08-0351 1:DECEASED 65.29315068 1:Recurred 50.69589041 -TCGA-08-0352 1:DECEASED 1.282191781 NA NA -TCGA-08-0353 1:DECEASED 8.416438356 1:Recurred 5.391780822 -TCGA-08-0354 1:DECEASED 17.95068493 1:Recurred 8.317808219 -TCGA-08-0355 1:DECEASED 24.55890411 1:Recurred 17.0630137 -TCGA-08-0356 1:DECEASED 31.10136986 1:Recurred 14.69589041 -TCGA-08-0357 1:DECEASED 37.57808219 1:Recurred 5.095890411 -TCGA-08-0358 1:DECEASED 22.29041096 1:Recurred 8.646575342 -TCGA-08-0359 1:DECEASED 3.353424658 NA NA -TCGA-08-0360 1:DECEASED 15.38630137 1:Recurred 3.682191781 -TCGA-08-0373 1:DECEASED 4.405479452 NA NA -TCGA-08-0375 1:DECEASED 12.23013699 1:Recurred 5.293150685 -TCGA-08-0380 1:DECEASED 14.9260274 1:Recurred 4.964383562 -TCGA-08-0385 1:DECEASED 2.695890411 NA NA -TCGA-08-0386 1:DECEASED 18.01643836 1:Recurred 14.03835616 -TCGA-08-0389 1:DECEASED 15.35342466 NA NA -TCGA-08-0390 1:DECEASED 13.97260274 NA NA -TCGA-08-0392 1:DECEASED 0.723287671 NA NA -TCGA-08-0509 1:DECEASED 12.55890411 NA NA -TCGA-08-0510 1:DECEASED 4.24109589 1:Recurred 2.926027397 -TCGA-08-0511 1:DECEASED 7.726027397 NA NA -TCGA-08-0512 1:DECEASED 42.14794521 1:Recurred 7.594520548 -TCGA-08-0514 1:DECEASED 11.07945205 NA NA -TCGA-08-0516 1:DECEASED 19.59452055 1:Recurred 1.315068493 -TCGA-08-0517 1:DECEASED 58.68493151 1:Recurred 33.66575342 -TCGA-08-0518 1:DECEASED 19.33150685 1:Recurred 4.405479452 -TCGA-08-0520 1:DECEASED 10.71780822 1:Recurred 3.452054795 -TCGA-08-0521 1:DECEASED 4.8 1:Recurred 4.109589041 -TCGA-08-0522 1:DECEASED 20.87671233 1:Recurred 8.745205479 -TCGA-08-0524 1:DECEASED 7.232876712 1:Recurred 2.005479452 -TCGA-08-0525 1:DECEASED 15.97808219 1:Recurred 11.27671233 -TCGA-08-0529 1:DECEASED 18.37808219 1:Recurred 10.78356164 -TCGA-08-0531 1:DECEASED 7.561643836 NA NA -TCGA-08-0623 NA NA NA NA -TCGA-08-0625 NA NA NA NA -TCGA-08-0626 NA NA NA NA -TCGA-08-0627 NA NA NA NA -TCGA-12-0615 1:DECEASED 15.32054795 1:Recurred 5.22739726 -TCGA-12-0616 1:DECEASED 14.69589041 1:Recurred 13.05205479 -TCGA-12-0618 1:DECEASED 12.95342466 NA NA -TCGA-12-0619 1:DECEASED 34.91506849 1:Recurred 6.673972603 -TCGA-12-0620 1:DECEASED 10.45479452 NA NA -TCGA-12-0654 1:DECEASED 7.594520548 1:Recurred 7.101369863 -TCGA-12-0656 1:DECEASED 94.78356164 1:Recurred 48.23013699 -TCGA-12-0657 1:DECEASED 0.098630137 NA NA -TCGA-12-0662 1:DECEASED 38.16986301 1:Recurred 19.69315068 -TCGA-12-0670 1:DECEASED 25.97260274 1:Recurred 12.46027397 -TCGA-12-0688 1:DECEASED 26.6630137 1:Recurred 7.495890411 -TCGA-12-0691 1:DECEASED 12.09863014 1:Recurred 3.189041096 -TCGA-12-0692 1:DECEASED 3.649315068 1:Recurred 1.150684932 -TCGA-12-0703 1:DECEASED 20.35068493 1:Recurred 6.805479452 -TCGA-12-0707 1:DECEASED 28.37260274 NA NA -TCGA-12-0769 1:DECEASED 15.05753425 1:Recurred 12.42739726 -TCGA-12-0772 1:DECEASED 53.85205479 1:Recurred 19.95616438 -TCGA-12-0773 1:DECEASED 43.23287671 1:Recurred 23.83561644 -TCGA-12-0775 1:DECEASED 7.62739726 1:Recurred 3.090410959 -TCGA-12-0776 1:DECEASED 9.731506849 1:Recurred 4.175342466 -TCGA-12-0778 1:DECEASED 14.89315068 1:Recurred 7.594520548 -TCGA-12-0780 1:DECEASED 14.86027397 1:Recurred 2.991780822 -TCGA-12-0818 1:DECEASED 91.7260274 NA NA -TCGA-12-0819 1:DECEASED 24.75616438 1:Recurred 14.03835616 -TCGA-12-0820 1:DECEASED 18.47671233 1:Recurred 8.942465753 -TCGA-12-0821 1:DECEASED 10.61917808 1:Recurred 8.515068493 -TCGA-12-0822 1:DECEASED 23.50684932 1:Recurred 2.991780822 -TCGA-12-0826 1:DECEASED 27.78082192 NA NA -TCGA-12-0827 1:DECEASED 38.76164384 NA NA -TCGA-12-0828 1:DECEASED 8.909589041 1:Recurred 0.42739726 -TCGA-12-0829 1:DECEASED 20.58082192 1:Recurred 15.55068493 -TCGA-12-1088 1:DECEASED 127.5616438 NA NA -TCGA-12-1089 1:DECEASED 5.819178082 NA NA -TCGA-12-1090 1:DECEASED 7.561643836 NA NA -TCGA-12-1091 1:DECEASED 33.20547945 1:Recurred 1.84109589 -TCGA-12-1092 1:DECEASED 21.73150685 1:Recurred 20.94246575 -TCGA-12-1093 1:DECEASED 15.97808219 1:Recurred 10.58630137 -TCGA-12-1094 1:DECEASED 12.23013699 1:Recurred 6.115068493 -TCGA-12-1095 1:DECEASED 15.84657534 1:Recurred 3.156164384 -TCGA-12-1096 1:DECEASED 9.106849315 1:Recurred 8.876712329 -TCGA-12-1097 1:DECEASED 14.53150685 1:Recurred 5.457534247 -TCGA-12-1098 1:DECEASED 3.978082192 1:Recurred 3.057534247 -TCGA-12-1099 1:DECEASED 4.109589041 1:Recurred 2.038356164 -TCGA-12-1597 NA NA NA NA -TCGA-12-1598 1:DECEASED 15.64931507 NA NA -TCGA-12-1599 1:DECEASED 25.67671233 1:Recurred 2.926027397 -TCGA-12-1600 1:DECEASED 14.72876712 1:Recurred 13.28219178 -TCGA-12-1602 1:DECEASED 6.739726027 1:Recurred 4.569863014 -TCGA-12-3644 1:DECEASED 59.76986301 1:Recurred 37.54520548 -TCGA-12-3646 1:DECEASED 43.9890411 1:Recurred 43.2 -TCGA-12-3648 1:DECEASED 26.9260274 1:Recurred 2.82739726 -TCGA-12-3649 1:DECEASED 15.22191781 1:Recurred 11.53972603 -TCGA-12-3650 1:DECEASED 10.94794521 1:Recurred 7.857534247 -TCGA-12-3651 1:DECEASED 12.69041096 1:Recurred 11.76986301 -TCGA-12-3652 1:DECEASED 34.91506849 1:Recurred 6.673972603 -TCGA-12-3653 1:DECEASED 14.53150685 1:Recurred 7.331506849 -TCGA-14-0736 1:DECEASED 15.09041096 1:Recurred 4.175342466 -TCGA-14-0783 1:DECEASED 6.180821918 NA NA -TCGA-14-0786 1:DECEASED 23.04657534 1:Recurred 4.175342466 -TCGA-14-0787 1:DECEASED 2.235616438 NA NA -TCGA-14-0789 1:DECEASED 11.24383562 1:Recurred 3.452054795 -TCGA-14-0790 1:DECEASED 13.74246575 NA NA -TCGA-14-0812 1:DECEASED 3.254794521 NA NA -TCGA-14-0813 1:DECEASED 1.347945205 NA NA -TCGA-14-0817 1:DECEASED 5.391780822 NA NA -TCGA-14-0865 1:DECEASED 16.50410959 1:Recurred 7.068493151 -TCGA-14-0866 1:DECEASED 26.33424658 1:Recurred 3.189041096 -TCGA-14-0867 1:DECEASED 2.038356164 NA NA -TCGA-14-0871 1:DECEASED 28.89863014 NA NA -TCGA-14-1034 1:DECEASED 15.94520548 1:Recurred 9.008219178 -TCGA-14-1037 1:DECEASED 19.29863014 1:Recurred 10.71780822 -TCGA-14-1396 1:DECEASED 1.117808219 NA NA -TCGA-14-1401 1:DECEASED 3.747945205 NA NA -TCGA-14-1402 1:DECEASED 32.02191781 1:Recurred 10.94794521 -TCGA-14-1451 1:DECEASED 23.11232877 1:Recurred 0.624657534 -TCGA-14-1452 1:DECEASED 7.101369863 1:Recurred 5.654794521 -TCGA-14-1453 1:DECEASED 1.150684932 NA NA -TCGA-14-1454 1:DECEASED 30.14794521 1:Recurred 9.534246575 -TCGA-14-1455 1:DECEASED 0.920547945 NA NA -TCGA-14-1456 0:LIVING 40.93150685 1:Recurred 3.189041096 -TCGA-14-1458 1:DECEASED 6.64109589 1:Recurred 2.630136986 -TCGA-14-1459 1:DECEASED 12.42739726 1:Recurred 9.04109589 -TCGA-14-1794 1:DECEASED 0.98630137 NA NA -TCGA-14-1795 1:DECEASED 1.939726027 NA NA -TCGA-14-1821 1:DECEASED 17.75342466 1:Recurred 10.88219178 -TCGA-14-1823 1:DECEASED 17.81917808 1:Recurred 4.569863014 -TCGA-14-1825 1:DECEASED 7.62739726 1:Recurred 2.991780822 -TCGA-14-1827 1:DECEASED 5.884931507 NA NA -TCGA-14-1829 0:LIVING 7.134246575 0:DiseaseFree 7.134246575 -TCGA-14-2554 1:DECEASED 17.49041096 NA NA -TCGA-14-2555 0:LIVING 7.956164384 0:DiseaseFree 7.956164384 -TCGA-14-3477 0:LIVING 3.747945205 0:DiseaseFree 3.747945205 -TCGA-15-0742 1:DECEASED 13.74246575 1:Recurred 7.594520548 -TCGA-15-1446 0:LIVING 19.10136986 1:Recurred 14.56438356 -TCGA-15-1447 0:LIVING 53.19452055 1:Recurred 11.17808219 -TCGA-15-1449 1:DECEASED 13.28219178 1:Recurred 2.432876712 -TCGA-16-0846 1:DECEASED 3.912328767 NA NA -TCGA-16-0848 1:DECEASED 17.5890411 1:Recurred 4.24109589 -TCGA-16-0849 0:LIVING 26.07123288 0:DiseaseFree 26.07123288 -TCGA-16-0850 1:DECEASED 16.37260274 1:Recurred 2.728767123 -TCGA-16-0861 NA NA 1:Recurred 3.057534247 -TCGA-16-1045 1:DECEASED 28.99726027 1:Recurred 21.50136986 -TCGA-16-1047 1:DECEASED 4.569863014 1:Recurred 0.821917808 -TCGA-16-1055 1:DECEASED 10.29041096 1:Recurred 9.468493151 -TCGA-16-1056 1:DECEASED 14.00547945 1:Recurred 7.857534247 -TCGA-16-1060 1:DECEASED 9.139726027 1:Recurred 3.649315068 -TCGA-16-1062 1:DECEASED 21.23835616 1:Recurred 17.03013699 -TCGA-16-1063 1:DECEASED 13.97260274 1:Recurred 12.13150685 -TCGA-16-1460 0:LIVING 6.410958904 0:DiseaseFree 6.410958904 -TCGA-19-0955 0:LIVING 11.76986301 0:DiseaseFree 11.76986301 -TCGA-19-0957 1:DECEASED 21.8630137 1:Recurred 1.643835616 -TCGA-19-0960 0:LIVING 8.61369863 0:DiseaseFree 8.61369863 -TCGA-19-0962 1:DECEASED 0.657534247 NA NA -TCGA-19-0963 0:LIVING 10.19178082 1:Recurred 10.19178082 -TCGA-19-0964 0:LIVING 3.38630137 0:DiseaseFree 3.38630137 -TCGA-19-1385 1:DECEASED 10.75068493 1:Recurred 5.78630137 -TCGA-19-1386 1:DECEASED 9.073972603 1:Recurred 7.791780822 -TCGA-19-1387 0:LIVING 5.950684932 1:Recurred 2.597260274 -TCGA-19-1388 1:DECEASED 12.95342466 1:Recurred 4.865753425 -TCGA-19-1389 1:DECEASED 4.635616438 1:Recurred 2.663013699 -TCGA-19-1390 1:DECEASED 25.38082192 NA NA -TCGA-19-1392 1:DECEASED 3.649315068 NA NA -TCGA-19-1786 0:LIVING 7.134246575 0:DiseaseFree 7.134246575 -TCGA-19-1787 1:DECEASED 12.65753425 1:Recurred 10.09315068 -TCGA-19-1788 1:DECEASED 3.649315068 NA NA -TCGA-19-1789 1:DECEASED 3.057534247 NA NA -TCGA-19-1791 0:LIVING NA 0:DiseaseFree NA -TCGA-19-2619 0:LIVING 9.665753425 1:Recurred 4.8 -TCGA-19-2620 1:DECEASED 4.865753425 NA NA -TCGA-19-2621 1:DECEASED 1.084931507 NA NA -TCGA-19-2623 0:LIVING 7.528767123 0:DiseaseFree 7.528767123 -TCGA-19-2624 1:DECEASED 0.164383562 NA NA -TCGA-19-2625 1:DECEASED 4.076712329 NA NA -TCGA-19-2629 0:LIVING 6.706849315 1:Recurred 4.865753425 -TCGA-26-1438 0:LIVING 10.02739726 1:Recurred 5.194520548 -TCGA-26-1440 0:LIVING 9.731506849 1:Recurred 7.660273973 -TCGA-26-1443 0:LIVING 7.101369863 1:Recurred 7.101369863 -TCGA-26-1799 1:DECEASED 9.369863014 1:Recurred 7.002739726 -TCGA-27-1830 1:DECEASED 5.063013699 1:Recurred 4.076712329 -TCGA-27-1831 1:DECEASED 16.56986301 1:Recurred 4.701369863 -TCGA-27-1832 1:DECEASED 9.863013699 1:Recurred 6.016438356 -TCGA-27-1833 1:DECEASED 24.23013699 1:Recurred 15.41917808 -TCGA-27-1834 1:DECEASED 40.50410959 1:Recurred 11.01369863 -TCGA-27-1835 1:DECEASED 21.30410959 1:Recurred 5.161643836 -TCGA-27-1836 1:DECEASED 30.04931507 1:Recurred 5.654794521 -TCGA-27-1837 1:DECEASED 14.03835616 1:Recurred 4.438356164 -TCGA-27-1838 1:DECEASED 11.50684932 1:Recurred 3.912328767 -TCGA-27-2518 1:DECEASED 24.72328767 1:Recurred 17.68767123 -TCGA-27-2519 0:LIVING 10.3890411 1:Recurred 8.416438356 -TCGA-27-2521 0:LIVING 10.3890411 0:DiseaseFree 10.3890411 -TCGA-27-2523 1:DECEASED 16.07671233 1:Recurred 13.21643836 -TCGA-27-2524 1:DECEASED 7.594520548 NA NA -TCGA-27-2526 1:DECEASED 2.860273973 NA NA -TCGA-27-2527 1:DECEASED 14.4 NA NA -TCGA-27-2528 1:DECEASED 15.74794521 1:Recurred 2.334246575 -TCGA-28-1745 0:LIVING 11.30958904 1:Recurred 10.3890411 -TCGA-28-1746 0:LIVING 0.197260274 0:DiseaseFree 0.197260274 -TCGA-28-1747 1:DECEASED 2.531506849 NA NA -TCGA-28-1749 0:LIVING 9.17260274 1:Recurred 9.17260274 -TCGA-28-1750 0:LIVING 8.317808219 1:Recurred 3.780821918 -TCGA-28-1751 0:LIVING 7.594520548 1:Recurred 7.167123288 -TCGA-28-1752 0:LIVING 8.449315068 0:DiseaseFree 8.449315068 -TCGA-28-1753 0:LIVING 1.183561644 0:DiseaseFree 1.183561644 -TCGA-28-1755 1:DECEASED 1.512328767 NA NA -TCGA-28-1756 0:LIVING 2.82739726 0:DiseaseFree 2.82739726 -TCGA-28-1757 0:LIVING 0.131506849 0:DiseaseFree 0.131506849 -TCGA-28-1760 0:LIVING 4.701369863 1:Recurred 3.452054795 -TCGA-28-2499 NA NA NA NA -TCGA-28-2502 0:LIVING 0.657534247 0:DiseaseFree 0.657534247 -TCGA-28-2506 0:LIVING 6.739726027 1:Recurred 2.761643836 -TCGA-28-2509 0:LIVING 4.767123288 0:DiseaseFree 4.767123288 -TCGA-28-2512 NA NA NA NA -TCGA-28-2513 0:LIVING 7.298630137 1:Recurred 2.465753425 -TCGA-28-2514 0:LIVING 5.260273973 0:DiseaseFree 5.260273973 -TCGA-32-1970 1:DECEASED 15.35342466 1:Recurred 13.41369863 -TCGA-32-1976 1:DECEASED 0.493150685 NA NA -TCGA-32-1982 1:DECEASED 4.668493151 NA NA -TCGA-32-1986 0:LIVING 7.660273973 1:Recurred 7.660273973 -TCGA-32-2615 0:LIVING 10.29041096 1:Recurred 4.306849315 -TCGA-32-2616 1:DECEASED 7.331506849 1:Recurred 5.950684932 -TCGA-32-2632 1:DECEASED 8.843835616 NA NA -TCGA-32-2634 0:LIVING 8.876712329 0:DiseaseFree 8.876712329 -TCGA-32-2638 0:LIVING 7.364383562 0:DiseaseFree 7.364383562 -TCGA-41-2571 1:DECEASED 0.854794521 1:Recurred 0.854794521 -TCGA-41-2573 0:LIVING 8.942465753 1:Recurred 5.490410959 -TCGA-41-2575 1:DECEASED 9.534246575 1:Recurred 4.306849315 -TCGA-41-3392 1:DECEASED 0.98630137 NA NA diff --git a/core/src/main/resources/sample_data/gbm/case_lists/cases_all.txt b/core/src/main/resources/sample_data/gbm/case_lists/cases_all.txt deleted file mode 100644 index 8df7e8cb9dd..00000000000 --- a/core/src/main/resources/sample_data/gbm/case_lists/cases_all.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: tcga_gbm -stable_id: all_cases_in_study -case_list_name: All Tumors -case_list_category: all_cases_in_study -case_list_description: All cases as used in the TCGA glioblastoma manuscript. -case_list_ids: TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0156 TCGA-06-0157 TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0360 TCGA-08-0373 TCGA-08-0375 TCGA-08-0380 TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0522 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 diff --git a/core/src/main/resources/sample_data/gbm/case_lists/cases_all_three.txt b/core/src/main/resources/sample_data/gbm/case_lists/cases_all_three.txt deleted file mode 100644 index aa04b3f63d3..00000000000 --- a/core/src/main/resources/sample_data/gbm/case_lists/cases_all_three.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: tcga_gbm -stable_id: gbm_3way_complete -case_list_name: All Complete Tumors (seq, mRNA, CNA) -case_list_category: all_cases_with_mutation_and_cna_and_mrna_data -case_list_description: 138 cases with sequencing data. 47 of these cases were not included in the 2008 Nature paper. -case_list_ids: TCGA-02-0027 TCGA-06-0137 TCGA-06-0145 TCGA-06-0238 TCGA-06-0129 TCGA-02-0006 TCGA-06-0214 TCGA-02-0021 TCGA-06-0166 TCGA-06-0173 TCGA-12-0620 TCGA-06-0648 TCGA-02-0028 TCGA-02-0057 TCGA-06-0158 TCGA-06-0187 TCGA-02-0115 TCGA-02-0009 TCGA-02-0104 TCGA-06-0168 TCGA-02-0113 TCGA-12-0616 TCGA-02-0079 TCGA-06-0201 TCGA-06-0178 TCGA-06-0147 TCGA-08-0390 TCGA-08-0345 TCGA-06-0209 TCGA-02-0099 TCGA-06-0139 TCGA-02-0052 TCGA-06-0176 TCGA-06-0645 TCGA-06-0148 TCGA-08-0352 TCGA-08-0356 TCGA-06-0169 TCGA-06-0185 TCGA-06-0154 TCGA-02-0086 TCGA-06-0143 TCGA-08-0380 TCGA-06-0156 TCGA-02-0015 TCGA-08-0348 TCGA-06-0152 TCGA-06-0124 TCGA-06-0125 TCGA-02-0038 TCGA-06-0219 TCGA-02-0116 TCGA-06-0122 TCGA-06-0128 TCGA-02-0085 TCGA-06-0211 TCGA-06-0138 TCGA-02-0064 TCGA-02-0070 TCGA-06-0171 TCGA-08-0358 TCGA-06-0189 TCGA-02-0107 TCGA-08-0375 TCGA-06-0157 TCGA-02-0068 TCGA-06-0210 TCGA-02-0023 TCGA-06-0126 TCGA-08-0385 TCGA-08-0354 TCGA-08-0347 TCGA-08-0355 TCGA-02-0007 TCGA-06-0174 TCGA-02-0102 TCGA-02-0060 TCGA-08-0350 TCGA-06-0141 TCGA-08-0244 TCGA-06-0133 TCGA-08-0246 TCGA-02-0069 TCGA-06-0208 TCGA-02-0047 TCGA-02-0043 TCGA-06-0127 TCGA-02-0014 TCGA-02-0071 TCGA-08-0344 TCGA-08-0349 TCGA-08-0386 TCGA-08-0357 TCGA-02-0016 TCGA-02-0025 TCGA-06-0644 TCGA-02-0024 TCGA-06-0646 TCGA-06-0195 TCGA-02-0004 TCGA-02-0011 TCGA-06-0188 TCGA-02-0058 TCGA-02-0084 TCGA-12-0618 TCGA-08-0373 TCGA-08-0360 TCGA-12-0619 TCGA-06-0206 TCGA-06-0213 TCGA-06-0130 TCGA-06-0190 TCGA-02-0026 TCGA-06-0221 TCGA-02-0055 TCGA-02-0034 TCGA-06-0197 TCGA-06-0241 TCGA-02-0033 TCGA-08-0353 TCGA-08-0359 TCGA-08-0351 TCGA-02-0089 TCGA-02-0074 TCGA-06-0237 TCGA-02-0075 TCGA-08-0389 TCGA-02-0083 TCGA-02-0037 TCGA-02-0080 TCGA-02-0114 TCGA-02-0003 TCGA-02-0048 TCGA-02-0054 TCGA-02-0046 TCGA-02-0001 TCGA-06-0184 TCGA-02-0010 diff --git a/core/src/main/resources/sample_data/gbm/data_CNA_consensus.txt b/core/src/main/resources/sample_data/gbm/data_CNA_consensus.txt deleted file mode 100644 index 686aef3ed53..00000000000 --- a/core/src/main/resources/sample_data/gbm/data_CNA_consensus.txt +++ /dev/null @@ -1,113 +0,0 @@ - TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0156 TCGA-06-0157 TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0360 TCGA-08-0373 TCGA-08-0375 TCGA-08-0380 TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0522 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 -consensus AKT1 0 0 1 0 -1 0 -1 -1 0 0 0 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 0 -1 -1 0 0 -1 0 -1 -1 0 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 -1 0 0 0 -1 0 -1 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 -1 -1 0 0 0 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 -1 0 -1 0 0 0 -1 0 0 -1 0 0 0 2 0 0 0 -1 0 0 -1 0 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 -1 1 0 0 0 0 0 0 0 0 -1 -1 -1 1 0 -1 0 1 0 -1 -1 -1 0 0 -1 0 -1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 -1 1 0 0 0 -1 0 0 0 -1 1 0 -1 0 -1 0 0 0 0 0 0 -1 -1 0 0 0 -consensus AKT2 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 -1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 -1 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 -1 1 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 -1 0 0 0 1 1 0 0 0 0 0 0 0 1 -1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 -1 0 1 1 0 0 0 0 0 1 0 0 0 0 -1 0 0 0 0 -1 0 0 0 0 0 1 1 0 0 0 -1 0 1 0 1 0 0 0 -1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 -consensus AKT3 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 -1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 1 0 1 0 -consensus ATM 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 -1 0 0 -1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 -1 0 0 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Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU Genome_Change_Broad Annotation_Transcript_Broad cDNA_Change_Broad Codon_Change_Broad Protein_Change_Broad MA:variant MA:GE.rank MA:CNA MA:OV.variant.samples MA:OV.gene.samples MA:mapping.issue MA:FImpact MA:FI.score MA:Func.region MA:bindsite.protein MA:bindsite.DNA/RNA MA:bindsite.sm.mol MA:CancerGenes FAM:TS MA:OG MA:COSMIC.mutations MA:COSMIC.cancers MA:Uniprot.regions MA:TS.interacts MA:OG.interacts MA:Pfam.domain MA:link.var MA:link.MSA MA:link.PDB -ELAVL2 1993 genome.wustl.edu 36 9 23691590 23691590 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense G167D G167D H 3.32 http://mutationassessor.org?cm=var&var=9,23691590,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ELAV2_HUMAN&rb=127&re=195&var=G167D http://mutationassessor.org/pdb.php?prot=ELAV2_HUMAN&from=127&to=195&var=G167D -NF1 4763 genome.wustl.edu 36 17 26609550 26609550 + missense SNP A A T Unknown Unknown TCGA-02-0107 TCGA-02-0107-10A-01W A A Valid Somatic missense R1412S R1412S H 3.155 http://mutationassessor.org?cm=var&var=17,26609550,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=1256&re=1451&var=R1412S http://mutationassessor.org/pdb.php?prot=NF1_HUMAN&from=1256&to=1451&var=R1412S -PTEN 5728 genome.wustl.edu 36 10 89682891 89682891 + missense SNP G A A Unknown Unknown TCGA-06-0187 TCGA-06-0187-10B-01W G G Valid Somatic missense G132D G132D H 3.075 http://mutationassessor.org?cm=var&var=10,89682891,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=G132D http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=G132D -PTEN 5728 genome.wustl.edu 36 10 89682783 89682783 + missense SNP C C T Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W C C Valid Somatic missense P96L P96L H 2.995 http://mutationassessor.org?cm=var&var=10,89682783,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=P96L http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=P96L -MSH2 4436 genome.wustl.edu 36 2 47557079 47557079 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense G692E G692E H 2.93 http://mutationassessor.org?cm=var&var=2,47557079,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MSH2_HUMAN&rb=619&re=854&var=G692E http://mutationassessor.org/pdb.php?prot=MSH2_HUMAN&from=619&to=854&var=G692E -LDHA 3939 genome.wustl.edu 36 11 18380975 18380975 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense T144I T144I H 2.87 http://mutationassessor.org?cm=var&var=11,18380975,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LDHA_HUMAN&rb=21&re=161&var=T144I http://mutationassessor.org/pdb.php?prot=LDHA_HUMAN&from=21&to=161&var=T144I -PTEN 5728 genome.wustl.edu 36 10 89701879 89701879 + missense SNP C C T Unknown Unknown TCGA-02-0038 TCGA-02-0038-10A-01W C C Valid Somatic missense R173C R173C H 2.8 http://mutationassessor.org?cm=var&var=10,89701879,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R173C http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R173C -KIT 3815 genome.wustl.edu 36 4 55288766 55288766 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense A599T A599T H 2.785 http://mutationassessor.org?cm=var&var=4,55288766,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KIT_HUMAN&rb=589&re=924&var=A599T http://mutationassessor.org/pdb.php?prot=KIT_HUMAN&from=589&to=924&var=A599T -ERBB2 2064 genome.wustl.edu 36 17 35133731 35133731 + missense SNP T A T Unknown Unknown TCGA-02-0107 TCGA-02-0107-10A-01W T T Valid Somatic missense V750E V750E H 2.785 http://mutationassessor.org?cm=var&var=17,35133731,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=720&re=976&var=V750E http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=720&to=976&var=V750E -TP53 7157 genome.wustl.edu 36 17 7519128 7519128 + missense SNP C T T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense C176Y C176Y H 2.765 http://mutationassessor.org?cm=var&var=17,7519128,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C176Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C176Y -TP53 7157 genome.wustl.edu 36 17 7518293 7518293 + missense SNP C T T Unknown Unknown TCGA-12-0618 TCGA-12-0618-10A-01W C C Valid Somatic missense C238Y C238Y H 2.755 http://mutationassessor.org?cm=var&var=17,7518293,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C238Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C238Y -DMBT1 1755 genome.wustl.edu 36 10 124348403 124348403 + missense SNP C C T Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C Valid Somatic missense A1027V A1027V H 2.73 http://mutationassessor.org?cm=var&var=10,124348403,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DMBT1_HUMAN&rb=996&re=1093&var=A1027V http://mutationassessor.org/pdb.php?prot=DMBT1_HUMAN&from=996&to=1093&var=A1027V -TP53 7157 genome.wustl.edu 36 17 7519120 7519120 + missense SNP G A G Unknown Unknown TCGA-02-0089 TCGA-02-0089-10A-01W G G Valid Somatic missense H179Y H179Y H 2.725 http://mutationassessor.org?cm=var&var=17,7519120,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H179Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H179Y -TP53 7157 genome.wustl.edu 36 17 7519132 7519132 + missense SNP G C C Unknown Unknown TCGA-02-0011 TCGA-02-0011-10A-01W G G Valid Somatic missense R175G R175G H 2.695 http://mutationassessor.org?cm=var&var=17,7519132,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175G http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175G -TP53 7157 genome.wustl.edu 36 17 7519131 7519131 + missense SNP C C T rs28934578 Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense R175H R175H H 2.695 http://mutationassessor.org?cm=var&var=17,7519131,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175H -TP53 7157 genome.wustl.edu 36 17 7519182 7519182 + missense SNP C C T Unknown Unknown TCGA-06-0130 TCGA-06-0130-10A-01W C C Valid Somatic missense R158H R158H H 2.675 http://mutationassessor.org?cm=var&var=17,7519182,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R158H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R158H -TP53 7157 genome.wustl.edu 36 17 7519182 7519182 + missense SNP C C T Unknown Unknown TCGA-06-0184 TCGA-06-0184-10B-01W C C Valid Somatic missense R158H R158H H 2.675 http://mutationassessor.org?cm=var&var=17,7519182,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R158H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R158H -EPHA4 2043 genome.wustl.edu 36 2 222055639 222055639 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense P332L P332L H 2.67 http://mutationassessor.org?cm=var&var=2,222055639,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA4_HUMAN&rb=330&re=424&var=P332L http://mutationassessor.org/pdb.php?prot=EPHA4_HUMAN&from=330&to=424&var=P332L -TP53 7157 genome.wustl.edu 36 17 7519137 7519137 + missense SNP A A C Unknown Unknown TCGA-02-0048 TCGA-02-0048-10A-01W A A Valid Somatic missense V173G V173G H 2.62 http://mutationassessor.org?cm=var&var=17,7519137,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V173G http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V173G -MET 4233 genome.wustl.edu 36 7 116206205 116206205 + missense SNP G C G Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G Valid Somatic missense M1160I M1160I H 2.595 http://mutationassessor.org?cm=var&var=7,116206205,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MET_HUMAN&rb=1078&re=1337&var=M1160I http://mutationassessor.org/pdb.php?prot=MET_HUMAN&from=1078&to=1337&var=M1160I -KRAS 3845 genome.wustl.edu 36 12 25289551 25289551 + missense SNP C C G Unknown Unknown TCGA-02-0069 TCGA-02-0069-10A-01W C C Valid Somatic missense G12A G12A H 2.59 http://mutationassessor.org?cm=var&var=12,25289551,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RASK_HUMAN&rb=5&re=165&var=G12A http://mutationassessor.org/pdb.php?prot=RASK_HUMAN&from=5&to=165&var=G12A -TP53 7157 genome.wustl.edu 36 17 7518928 7518928 + missense SNP C C T Unknown Unknown TCGA-02-0055 TCGA-02-0055-10A-01W C C Valid Somatic missense V216M V216M H 2.585 http://mutationassessor.org?cm=var&var=17,7518928,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V216M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V216M -TP53 7157 genome.wustl.edu 36 17 7518928 7518928 + missense SNP C C T Unknown Unknown TCGA-08-0359 TCGA-08-0359-11A-01W C C Valid Somatic missense V216M V216M H 2.585 http://mutationassessor.org?cm=var&var=17,7518928,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V216M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V216M -TP53 7157 genome.wustl.edu 36 17 7517830 7517830 + missense SNP G C G Unknown Unknown TCGA-02-0001 TCGA-02-0001-10A-01W G G Valid Somatic missense P278R P278R H 2.55 http://mutationassessor.org?cm=var&var=17,7517830,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=P278R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=P278R -FGFR3 2261 genome.wustl.edu 36 4 1777687 1777687 + missense SNP A A G Unknown Unknown TCGA-06-0168 TCGA-06-0168-10A-01W A A Valid Somatic missense K650E K650E H 2.515 http://mutationassessor.org?cm=var&var=4,1777687,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR3_HUMAN&rb=472&re=748&var=K650E http://mutationassessor.org/pdb.php?prot=FGFR3_HUMAN&from=472&to=748&var=K650E -NF1 4763 genome.wustl.edu 36 17 26610182 26610182 + missense SNP C A C Unknown Unknown TCGA-06-0190 TCGA-06-0190-10B-01W C C Valid Somatic missense Q1447K Q1447K H 2.515 http://mutationassessor.org?cm=var&var=17,26610182,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=1256&re=1451&var=Q1447K http://mutationassessor.org/pdb.php?prot=NF1_HUMAN&from=1256&to=1451&var=Q1447K -CHD5 26038 genome.wustl.edu 36 1 6111646 6111646 + missense SNP G A G Unknown Unknown TCGA-06-0210 TCGA-06-0210-10A-01W G G Valid Somatic missense S1153L S1153L H 2.51 http://mutationassessor.org?cm=var&var=1,6111646,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CHD5_HUMAN&rb=1028&re=1193&var=S1153L http://mutationassessor.org/pdb.php?prot=CHD5_HUMAN&from=1028&to=1193&var=S1153L -TP53 7157 genome.wustl.edu 36 17 7519267 7519267 + missense SNP G A G Unknown Unknown TCGA-02-0075 TCGA-02-0075-10A-01W G G Valid Somatic missense L130F L130F H 2.45 http://mutationassessor.org?cm=var&var=17,7519267,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=L130F http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=L130F -TP53 7157 genome.wustl.edu 36 17 7519266 7519266 + missense SNP A A C Unknown Unknown TCGA-08-0389 TCGA-08-0389-11A-01W A A Valid Somatic missense L130R L130R H 2.45 http://mutationassessor.org?cm=var&var=17,7519266,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=L130R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=L130R -DSG1 1828 genome.wustl.edu 36 18 27165803 27165803 + missense SNP C C T Unknown Unknown TCGA-02-0004 TCGA-02-0004-10A-01W C C Valid Somatic missense T220M T220M H 2.38 http://mutationassessor.org?cm=var&var=18,27165803,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DSG1_HUMAN&rb=162&re=260&var=T220M http://mutationassessor.org/pdb.php?prot=DSG1_HUMAN&from=162&to=260&var=T220M -ERBB2 2064 genome.wustl.edu 36 17 35121736 35121736 + missense SNP T C T Unknown Unknown TCGA-02-0089 TCGA-02-0089-10A-01W T T Valid Somatic missense C311R C311R H 2.37 http://mutationassessor.org?cm=var&var=17,35121736,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=183&re=343&var=C311R http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=183&to=343&var=C311R -EGFR 1956 genome.wustl.edu 36 7 55200537 55200537 + missense SNP G T T Unknown Unknown TCGA-02-0046 TCGA-02-0046-10A-01W G G Valid Somatic missense G598V G598V H 2.37 http://mutationassessor.org?cm=var&var=7,55200537,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=G598V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=G598V -ZNF708 7562 genome.wustl.edu 36 19 21285158 21285158 + missense SNP T C T Unknown Unknown TCGA-06-0173 TCGA-06-0173-10B-01W T T Valid Somatic missense N39D N39D H 2.37 http://mutationassessor.org?cm=var&var=19,21285158,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ZN708_HUMAN&rb=4&re=44&var=N39D http://mutationassessor.org/pdb.php?prot=ZN708_HUMAN&from=4&to=44&var=N39D -ZNF708 7562 genome.wustl.edu 36 19 21285158 21285158 + missense SNP T C T Unknown Unknown TCGA-06-0190 TCGA-06-0190-10B-01W T T Valid Somatic missense N39D N39D H 2.37 http://mutationassessor.org?cm=var&var=19,21285158,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ZN708_HUMAN&rb=4&re=44&var=N39D http://mutationassessor.org/pdb.php?prot=ZN708_HUMAN&from=4&to=44&var=N39D -ZNF708 7562 genome.wustl.edu 36 19 21285158 21285158 + missense SNP T C T Unknown Unknown TCGA-06-0216 TCGA-06-0216-10A-01W T T Valid Somatic missense N39D N39D H 2.37 http://mutationassessor.org?cm=var&var=19,21285158,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ZN708_HUMAN&rb=4&re=44&var=N39D http://mutationassessor.org/pdb.php?prot=ZN708_HUMAN&from=4&to=44&var=N39D -EGFR 1956 genome.wustl.edu 36 7 55191104 55191104 + missense SNP G A G Unknown Unknown TCGA-08-0349 TCGA-08-0349-11A-02W G G Valid Somatic missense C326Y C326Y H 2.365 http://mutationassessor.org?cm=var&var=7,55191104,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=C326Y http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=C326Y -TP53 7157 genome.wustl.edu 36 17 7517846 7517846 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 genome.wustl.edu 36 17 7517846 7517846 + missense SNP G A A Unknown Unknown TCGA-02-0080 TCGA-02-0080-10A-01W G G Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 genome.wustl.edu 36 17 7517845 7517845 + missense SNP C C T rs28934576 Unknown TCGA-06-0206 TCGA-06-0206-10A-01W C C Valid Somatic missense R273H R273H H 2.325 http://mutationassessor.org?cm=var&var=17,7517845,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273H -ERBB2 2064 genome.wustl.edu 36 17 35121805 35121805 + missense SNP T A T Unknown Unknown TCGA-02-0115 TCGA-02-0115-10A-01W T T Valid Somatic missense C334S C334S H 2.32 http://mutationassessor.org?cm=var&var=17,35121805,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=183&re=343&var=C334S http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=183&to=343&var=C334S -ZNF708 7562 genome.wustl.edu 36 19 21285145 21285145 + missense SNP A A C Unknown Unknown TCGA-06-0159 TCGA-06-0159-10A-01W A A Valid Somatic missense L43R L43R H 2.295 http://mutationassessor.org?cm=var&var=19,21285145,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ZN708_HUMAN&rb=4&re=44&var=L43R http://mutationassessor.org/pdb.php?prot=ZN708_HUMAN&from=4&to=44&var=L43R -FGFR1 2260 genome.wustl.edu 36 8 38391465 38391465 + missense SNP T C T Unknown Unknown TCGA-02-0060 TCGA-02-0060-10A-01W T T Valid Somatic missense K656E K656E H 2.29 http://mutationassessor.org?cm=var&var=8,38391465,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR1_HUMAN&rb=478&re=754&var=K656E http://mutationassessor.org/pdb.php?prot=FGFR1_HUMAN&from=478&to=754&var=K656E -TP53 7157 genome.wustl.edu 36 17 7519126 7519126 + missense SNP G A G Unknown Unknown TCGA-02-0046 TCGA-02-0046-10A-01W G G Valid Somatic missense P177S P177S H 2.29 http://mutationassessor.org?cm=var&var=17,7519126,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=P177S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=P177S -PIK3C2G 5288 genome.wustl.edu 36 12 18468201 18468201 + missense SNP G A G Unknown Unknown TCGA-06-0137 TCGA-06-0137-10A-01W G G Valid Somatic missense R781H R781H H 2.26 http://mutationassessor.org?cm=var&var=12,18468201,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=646&re=828&var=R781H http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=646&to=828&var=R781H -TP53 7157 genome.wustl.edu 36 17 7518234 7518234 + missense SNP C C G Unknown Unknown TCGA-02-0034 TCGA-02-0034-10A-01W C C Valid Somatic missense E258Q E258Q H 2.24 http://mutationassessor.org?cm=var&var=17,7518234,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E258Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E258Q -DSP 1832 genome.wustl.edu 36 6 7513753 7513753 + missense SNP C C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense R451C R451C H 2.23 http://mutationassessor.org?cm=var&var=6,7513753,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DESP_HUMAN&rb=401&re=600&var=R451C -PTPN11 5781 genome.wustl.edu 36 12 111395220 111395220 + missense SNP C C G Unknown Unknown TCGA-06-0171 TCGA-06-0171-10A-01W C C Valid Somatic missense I282M I282M H 2.21 http://mutationassessor.org?cm=var&var=12,111395220,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTN11_HUMAN&rb=273&re=524&var=I282M http://mutationassessor.org/pdb.php?prot=PTN11_HUMAN&from=273&to=524&var=I282M -TP53 7157 genome.wustl.edu 36 17 7518997 7518997 + missense SNP G A G Unknown Unknown TCGA-08-0245 TCGA-08-0245-11A-01W G G Valid Somatic missense H193Y H193Y H 2.2 http://mutationassessor.org?cm=var&var=17,7518997,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H193Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H193Y -TP53 7157 genome.wustl.edu 36 17 7517849 7517849 + missense SNP C C T Unknown Unknown TCGA-02-0058 TCGA-02-0058-10A-01W C C Valid Somatic missense V272M V272M H 2.195 http://mutationassessor.org?cm=var&var=17,7517849,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V272M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V272M -LDHA 3939 genome.wustl.edu 36 11 18381850 18381850 + missense SNP T C T Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W T T Valid Somatic missense V209A V209A H 2.14 http://mutationassessor.org?cm=var&var=11,18381850,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LDHA_HUMAN&rb=163&re=331&var=V209A http://mutationassessor.org/pdb.php?prot=LDHA_HUMAN&from=163&to=331&var=V209A -TP53 7157 genome.wustl.edu 36 17 7518275 7518275 + missense SNP C C T rs28934572 Unknown TCGA-02-0026 TCGA-02-0026-10A-01W C C Valid Somatic missense G244D G244D H 2.1 http://mutationassessor.org?cm=var&var=17,7518275,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G244D http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G244D -A2M 2 genome.wustl.edu 36 12 9150104 9150104 + missense SNP C C G Unknown Unknown TCGA-02-0024 TCGA-02-0024-10A-01W C C Valid Somatic missense G367R G367R H 2.005 http://mutationassessor.org?cm=var&var=12,9150104,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=222&re=421&var=G367R -SULF1 23213 genome.wustl.edu 36 8 70713344 70713344 + missense SNP C C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense R780C R780C M 1.995 http://mutationassessor.org?cm=var&var=8,70713344,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SULF1_HUMAN&rb=681&re=871&var=R780C -COL4A1 1282 genome.wustl.edu 36 13 109629348 109629348 + missense SNP C C T Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C Valid Somatic missense G794E G794E M 1.99 http://mutationassessor.org?cm=var&var=13,109629348,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO4A1_HUMAN&rb=779&re=839&var=G794E -KLF6 1316 genome.wustl.edu 36 10 3817172 3817172 + missense SNP T C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T Valid Somatic missense E12G E12G M 1.975 http://mutationassessor.org?cm=var&var=10,3817172,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KLF6_HUMAN&rb=1&re=143&var=E12G -EGFR 1956 genome.wustl.edu 36 7 55187768 55187768 + missense SNP C T T Unknown Unknown TCGA-06-0154 TCGA-06-0154-10A-01W C C Valid Somatic missense R222C R222C M 1.965 http://mutationassessor.org?cm=var&var=7,55187768,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=R222C http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=R222C -SOCS1 8651 genome.wustl.edu 36 16 11256592 11256592 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense G82E G82E M 1.955 http://mutationassessor.org?cm=var&var=16,11256592,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SOCS1_HUMAN&rb=79&re=154&var=G82E http://mutationassessor.org/pdb.php?prot=SOCS1_HUMAN&from=79&to=154&var=G82E -FBXW7 55294 genome.wustl.edu 36 4 153463593 153463593 + missense SNP C C T Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C Valid Somatic missense V672M V672M M 1.955 http://mutationassessor.org?cm=var&var=4,153463593,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FBXW7_HUMAN&rb=601&re=707&var=V672M http://mutationassessor.org/pdb.php?prot=FBXW7_HUMAN&from=601&to=707&var=V672M -PIK3C2G 5288 genome.wustl.edu 36 12 18549503 18549503 + missense SNP A A G Unknown Unknown TCGA-06-0145 TCGA-06-0145-10A-01W A A Valid Somatic missense N1014S N1014S M 1.925 http://mutationassessor.org?cm=var&var=12,18549503,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=915&re=1130&var=N1014S http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=915&to=1130&var=N1014S -TP53 7157 genome.wustl.edu 36 17 7517836 7517836 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense A276V A276V M 1.885 http://mutationassessor.org?cm=var&var=17,7517836,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=A276V http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=A276V -TP53 7157 genome.wustl.edu 36 17 7518273 7518273 + missense SNP C C T rs28934575 Unknown TCGA-02-0048 TCGA-02-0048-10A-01W C C Valid Somatic missense G245S G245S M 1.875 http://mutationassessor.org?cm=var&var=17,7518273,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245S -FRAP1 2475 genome.wustl.edu 36 1 11224264 11224264 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense A492T A492T M 1.83 http://mutationassessor.org?cm=var&var=1,11224264,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FRAP_HUMAN&rb=357&re=695&var=A492T -PTEN 5728 genome.wustl.edu 36 10 89682887 89682887 + missense SNP A A G Unknown Unknown TCGA-02-0055 TCGA-02-0055-10A-01W A A Valid Somatic missense T131A T131A M 1.815 http://mutationassessor.org?cm=var&var=10,89682887,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T131A http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T131A -ERBB2 2064 genome.wustl.edu 36 17 35121767 35121767 + missense SNP A A G Unknown Unknown TCGA-02-0089 TCGA-02-0089-10A-01W A A Valid Somatic missense E321G E321G M 1.78 http://mutationassessor.org?cm=var&var=17,35121767,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=183&re=343&var=E321G http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=183&to=343&var=E321G -MLH1 4292 genome.wustl.edu 36 3 37056750 37056750 + missense SNP A A G Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W A A Valid Somatic missense H543R H543R M 1.76 http://mutationassessor.org?cm=var&var=3,37056750,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MLH1_HUMAN&rb=521&re=755&var=H543R -ARNT 405 genome.wustl.edu 36 1 149055490 149055490 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense P607S P607S M 1.75 http://mutationassessor.org?cm=var&var=1,149055490,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ARNT_HUMAN&rb=601&re=789&var=P607S -FGFR3 2261 genome.wustl.edu 36 4 1777688 1777688 + missense SNP A A C Unknown Unknown TCGA-06-0159 TCGA-06-0159-10A-01W A A Valid Somatic missense K650T K650T M 1.73 http://mutationassessor.org?cm=var&var=4,1777688,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR3_HUMAN&rb=472&re=748&var=K650T http://mutationassessor.org/pdb.php?prot=FGFR3_HUMAN&from=472&to=748&var=K650T -COL6A2 1292 genome.wustl.edu 36 21 46356756 46356756 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense G184D G184D M 1.725 http://mutationassessor.org?cm=var&var=21,46356756,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO6A2_HUMAN&rb=46&re=233&var=G184D -TP53 7157 genome.wustl.edu 36 17 7519121 7519121 + missense SNP G G T Unknown Unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G Valid Somatic missense H178Q H178Q M 1.725 http://mutationassessor.org?cm=var&var=17,7519121,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H178Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H178Q -TP53 7157 genome.wustl.edu 36 17 7518303 7518303 + missense SNP T C C Unknown Unknown TCGA-02-0074 TCGA-02-0074-10A-01W T T Valid Somatic missense N235D N235D M 1.705 http://mutationassessor.org?cm=var&var=17,7518303,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=N235D http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=N235D -EGFR 1956 genome.wustl.edu 36 7 55189315 55189315 + missense SNP G A G Unknown Unknown TCGA-02-0089 TCGA-02-0089-10A-01W G G Valid Somatic missense A289T A289T M 1.7 http://mutationassessor.org?cm=var&var=7,55189315,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289T http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289T -EGFR 1956 genome.wustl.edu 36 7 55189316 55189316 + missense SNP C C T Unknown Unknown TCGA-02-0054 TCGA-02-0054-10A-01W C C Valid Somatic missense A289V A289V M 1.7 http://mutationassessor.org?cm=var&var=7,55189316,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289V -ERBB2 2064 genome.wustl.edu 36 17 35134527 35134527 + missense SNP T C T Unknown Unknown TCGA-02-0069 TCGA-02-0069-10A-01W T T Valid Somatic missense V777A V777A M 1.695 http://mutationassessor.org?cm=var&var=17,35134527,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=720&re=976&var=V777A http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=720&to=976&var=V777A -RELN 5649 genome.wustl.edu 36 7 102970478 102970478 + missense SNP G T T Unknown Unknown TCGA-06-0167 TCGA-06-0167-10A-01W G G Valid Somatic missense L2203I L2203I M 1.68 http://mutationassessor.org?cm=var&var=7,102970478,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RELN_HUMAN&rb=2160&re=2248&var=L2203I http://mutationassessor.org/pdb.php?prot=RELN_HUMAN&from=2160&to=2248&var=L2203I -ICA1 3382 genome.wustl.edu 36 7 8164735 8164735 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense L218F L218F M 1.675 http://mutationassessor.org?cm=var&var=7,8164735,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ICA69_HUMAN&rb=22&re=249&var=L218F -GPR78 27201 genome.wustl.edu 36 4 8633674 8633674 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense S22F S22F M 1.67 http://mutationassessor.org?cm=var&var=4,8633674,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GPR78_HUMAN&rb=22&re=294&var=S22F -PIK3R1 5295 genome.wustl.edu 36 5 67626853 67626853 + missense SNP A A G Unknown Unknown TCGA-02-0068 TCGA-02-0068-10A-01W A A Valid Somatic missense N564D N564D M 1.65 http://mutationassessor.org?cm=var&var=5,67626853,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=401&re=600&var=N564D http://mutationassessor.org/pdb.php?prot=P85A_HUMAN&from=401&to=600&var=N564D -PIK3R1 5295 genome.wustl.edu 36 5 67626855 67626855 + missense SNP C C G Unknown Unknown TCGA-02-0074 TCGA-02-0074-10A-01W C C Valid Somatic missense N564K N564K M 1.65 http://mutationassessor.org?cm=var&var=5,67626855,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=401&re=600&var=N564K http://mutationassessor.org/pdb.php?prot=P85A_HUMAN&from=401&to=600&var=N564K -PTEN 5728 genome.wustl.edu 36 10 89682975 89682975 + missense SNP C C T Unknown Unknown TCGA-02-0079 TCGA-02-0079-10A-01W C C Valid Somatic missense T160I T160I M 1.6 http://mutationassessor.org?cm=var&var=10,89682975,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T160I http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T160I -KALRN 8997 genome.wustl.edu 36 3 125860028 125860028 + missense SNP G A G Unknown Unknown TCGA-06-0176 TCGA-06-0176-10A-01W Valid Somatic missense V2031I V2031I M 1.585 http://mutationassessor.org?cm=var&var=3,125860028,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KALRN_HUMAN&rb=1932&re=2102&var=V2031I http://mutationassessor.org/pdb.php?prot=KALRN_HUMAN&from=1932&to=2102&var=V2031I -CHRNA1 1134 genome.wustl.edu 36 2 175327275 175327275 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense T178I T178I M 1.58 http://mutationassessor.org?cm=var&var=2,175327275,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ACHA_HUMAN&rb=97&re=256&var=T178I http://mutationassessor.org/pdb.php?prot=ACHA_HUMAN&from=97&to=256&var=T178I -EGFR 1956 genome.wustl.edu 36 7 55189324 55189324 + missense SNP G G T Unknown Unknown TCGA-06-0127 TCGA-06-0127-10A-01W G G Valid Somatic missense V292L V292L M 1.575 http://mutationassessor.org?cm=var&var=7,55189324,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=V292L http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=V292L -PIK3R1 5295 genome.wustl.edu 36 5 67626841 67626841 + missense SNP G G T Unknown Unknown TCGA-02-0089 TCGA-02-0089-10A-01W G G Valid Somatic missense D560Y D560Y M 1.56 http://mutationassessor.org?cm=var&var=5,67626841,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=401&re=600&var=D560Y http://mutationassessor.org/pdb.php?prot=P85A_HUMAN&from=401&to=600&var=D560Y -PIK3R1 5295 genome.wustl.edu 36 5 67624894 67624894 + missense SNP G A G Unknown Unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G Valid Somatic missense G376R G376R M 1.545 http://mutationassessor.org?cm=var&var=5,67624894,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=333&re=408&var=G376R http://mutationassessor.org/pdb.php?prot=P85A_HUMAN&from=333&to=408&var=G376R -GYPC 2995 genome.wustl.edu 36 2 127170093 127170093 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense G98S G98S M 1.54 http://mutationassessor.org?cm=var&var=2,127170093,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GLPC_HUMAN&rb=1&re=128&var=G98S -OSMR 9180 genome.wustl.edu 36 5 38968356 38968356 + missense SNP C C T Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C Valid Somatic missense P777S P777S M 1.54 http://mutationassessor.org?cm=var&var=5,38968356,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=OSMR_HUMAN&rb=610&re=809&var=P777S -FBLN1 2192 genome.wustl.edu 36 22 44349167 44349167 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense P604S P604S M 1.53 http://mutationassessor.org?cm=var&var=22,44349167,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FBLN1_HUMAN&rb=578&re=703&var=P604S -A2M 2 genome.wustl.edu 36 12 9116623 9116623 + missense SNP A A G Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W A A Valid Somatic missense F1290L F1290L M 1.515 http://mutationassessor.org?cm=var&var=12,9116623,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1267&re=1375&var=F1290L -EGFR 1956 genome.wustl.edu 36 7 55189204 55189204 + missense SNP C C T Unknown Unknown TCGA-02-0021 TCGA-02-0021-10A-01W C C Valid Somatic missense R252C R252C M 1.495 http://mutationassessor.org?cm=var&var=7,55189204,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=R252C http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=R252C -CYP3A4 1576 genome.wustl.edu 36 7 99219583 99219583 + missense SNP C C T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C Valid Somatic missense V20M V20M M 1.485 http://mutationassessor.org?cm=var&var=7,99219583,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CP3A4_HUMAN&rb=1&re=200&var=V20M -GBAS 2631 genome.wustl.edu 36 7 56032609 56032609 + missense SNP G A G Unknown Unknown TCGA-02-0089 TCGA-02-0089-10A-01W G G Valid Somatic missense G257S G257S M 1.46 http://mutationassessor.org?cm=var&var=7,56032609,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NIPS2_HUMAN&rb=187&re=284&var=G257S http://mutationassessor.org/pdb.php?prot=NIPS2_HUMAN&from=187&to=284&var=G257S -PTEN 5728 genome.wustl.edu 36 10 89701940 89701940 + missense SNP T C C Unknown Unknown TCGA-02-0007 TCGA-02-0007-10A-01W T T Valid Somatic missense L193P L193P M 1.415 http://mutationassessor.org?cm=var&var=10,89701940,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=L193P http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=L193P -TOP1 7150 genome.wustl.edu 36 20 39177465 39177465 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense P560L P560L M 1.405 http://mutationassessor.org?cm=var&var=20,39177465,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TOP1_HUMAN&rb=431&re=668&var=P560L http://mutationassessor.org/pdb.php?prot=TOP1_HUMAN&from=431&to=668&var=P560L -PDGFRA 5156 genome.wustl.edu 36 4 54835503 54835503 + missense SNP T A T Unknown Unknown TCGA-08-0347 TCGA-08-0347-11A-01W T T Valid Somatic missense V536E V536E M 1.4 http://mutationassessor.org?cm=var&var=4,54835503,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PGFRA_HUMAN&rb=401&re=600&var=V536E -EGFR 1956 genome.wustl.edu 36 7 55200603 55200603 + missense SNP G A G Unknown Unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G Valid Somatic missense C620Y C620Y M 1.34 http://mutationassessor.org?cm=var&var=7,55200603,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=C620Y http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=601&to=800&var=C620Y -KALRN 8997 genome.wustl.edu 36 3 125647749 125647749 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense T1120I T1120I M 1.34 http://mutationassessor.org?cm=var&var=3,125647749,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KALRN_HUMAN&rb=1004&re=1129&var=T1120I -FGFR3 2261 genome.wustl.edu 36 4 1777343 1777343 + missense SNP C C G Unknown Unknown TCGA-06-0141 TCGA-06-0141-10A-01W C C Valid Somatic missense P572A P572A M 1.315 http://mutationassessor.org?cm=var&var=4,1777343,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR3_HUMAN&rb=472&re=748&var=P572A http://mutationassessor.org/pdb.php?prot=FGFR3_HUMAN&from=472&to=748&var=P572A -EGFR 1956 genome.wustl.edu 36 7 55208288 55208288 + missense SNP C C G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense R680G R680G M 1.31 http://mutationassessor.org?cm=var&var=7,55208288,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=R680G http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=601&to=800&var=R680G -HIPK2 28996 genome.wustl.edu 36 7 138962011 138962011 + missense SNP C C T Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C Valid Somatic missense E499K E499K M 1.305 http://mutationassessor.org?cm=var&var=7,138962011,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=HIPK2_HUMAN&rb=199&re=527&var=E499K http://mutationassessor.org/pdb.php?prot=HIPK2_HUMAN&from=199&to=527&var=E499K -NF1 4763 genome.wustl.edu 36 17 26681585 26681585 + missense SNP G A G Unknown Unknown TCGA-06-0208 TCGA-06-0208-10A-01W G G Valid Somatic missense E1919K E1919K M 1.295 http://mutationassessor.org?cm=var&var=17,26681585,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=1801&re=2000&var=E1919K -MBD6 114785 genome.wustl.edu 36 12 56204819 56204819 + missense SNP C C T Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C Valid Somatic missense L55F L55F M 1.29 http://mutationassessor.org?cm=var&var=12,56204819,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MBD6_HUMAN&rb=11&re=81&var=L55F -RELN 5649 genome.wustl.edu 36 7 102914070 102914070 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense L3265F L3265F M 1.245 http://mutationassessor.org?cm=var&var=7,102914070,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RELN_HUMAN&rb=3201&re=3400&var=L3265F http://mutationassessor.org/pdb.php?prot=RELN_HUMAN&from=3201&to=3400&var=L3265F -NOS3 4846 genome.wustl.edu 36 7 150329333 150329333 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense G439R G439R M 1.235 http://mutationassessor.org?cm=var&var=7,150329333,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NOS3_HUMAN&rb=115&re=486&var=G439R http://mutationassessor.org/pdb.php?prot=NOS3_HUMAN&from=115&to=486&var=G439R -MAGEA1 4100 genome.wustl.edu 36 X 152135694 152135694 + missense SNP G A G Unknown Unknown TCGA-06-0137 TCGA-06-0137-10A-01W G G Valid Somatic missense L171F L171F M 1.215 http://mutationassessor.org?cm=var&var=X,152135694,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MAGA1_HUMAN&rb=109&re=279&var=L171F http://mutationassessor.org/pdb.php?prot=MAGA1_HUMAN&from=109&to=279&var=L171F -FGFR2 2263 genome.wustl.edu 36 10 123288210 123288210 + missense SNP G G T Unknown Unknown TCGA-02-0033 TCGA-02-0033-10A-01W G G Valid Somatic missense Q212K Q212K M 1.2 http://mutationassessor.org?cm=var&var=10,123288210,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR2_HUMAN&rb=161&re=248&var=Q212K http://mutationassessor.org/pdb.php?prot=FGFR2_HUMAN&from=161&to=248&var=Q212K -BAI3 577 genome.wustl.edu 36 6 69760544 69760544 + missense SNP C C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense A633V A633V M 1.185 http://mutationassessor.org?cm=var&var=6,69760544,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BAI3_HUMAN&rb=586&re=810&var=A633V -FURIN 5045 genome.wustl.edu 36 15 89225202 89225202 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense A574T A574T M 1.14 http://mutationassessor.org?cm=var&var=15,89225202,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FURIN_HUMAN&rb=401&re=600&var=A574T http://mutationassessor.org/pdb.php?prot=FURIN_HUMAN&from=401&to=600&var=A574T -LTF 4057 genome.wustl.edu 36 3 46471868 46471868 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense R190C R190C M 1.13 http://mutationassessor.org?cm=var&var=3,46471868,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TRFL_HUMAN&rb=25&re=352&var=R190C http://mutationassessor.org/pdb.php?prot=TRFL_HUMAN&from=25&to=352&var=R190C -COL1A2 1278 genome.wustl.edu 36 7 93892889 93892889 + missense SNP G A G Unknown Unknown TCGA-06-0126 TCGA-06-0126-10A-01W G G Valid Somatic missense R938H R938H M 1.13 http://mutationassessor.org?cm=var&var=7,93892889,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO1A2_HUMAN&rb=801&re=1000&var=R938H http://mutationassessor.org/pdb.php?prot=CO1A2_HUMAN&from=801&to=1000&var=R938H -PGR 5241 genome.wustl.edu 36 11 100504462 100504462 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense V184M V184M M 1.13 http://mutationassessor.org?cm=var&var=11,100504462,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PRGR_HUMAN&rb=1&re=564&var=V184M -CTNNB1 1499 genome.wustl.edu 36 3 41252952 41252952 + missense SNP G A G Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G Valid Somatic missense A638T A638T M 1.115 http://mutationassessor.org?cm=var&var=3,41252952,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CTNB1_HUMAN&rb=601&re=781&var=A638T http://mutationassessor.org/pdb.php?prot=CTNB1_HUMAN&from=601&to=781&var=A638T -NF1 4763 genome.wustl.edu 36 17 26691733 26691733 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense A2336T A2336T M 1.11 http://mutationassessor.org?cm=var&var=17,26691733,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=2201&re=2400&var=A2336T -AIFM1 9131 genome.wustl.edu 36 X 129111203 129111203 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense D91N D91N M 1.11 http://mutationassessor.org?cm=var&var=X,129111203,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AIFM1_HUMAN&rb=1&re=132&var=D91N -FURIN 5045 genome.wustl.edu 36 15 89225991 89225991 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense G755D G755D M 1.105 http://mutationassessor.org?cm=var&var=15,89225991,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FURIN_HUMAN&rb=683&re=793&var=G755D -RET 5979 genome.wustl.edu 36 10 42917990 42917990 + missense SNP G A G Unknown Unknown TCGA-08-0375 TCGA-08-0375-11A-01W G G Valid Somatic missense E178K E178K M 1.1 http://mutationassessor.org?cm=var&var=10,42917990,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RET_HUMAN&rb=172&re=262&var=E178K -BAMBI 25805 genome.wustl.edu 36 10 29011215 29011215 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense G221E G221E M 1.1 http://mutationassessor.org?cm=var&var=10,29011215,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BAMBI_HUMAN&rb=201&re=260&var=G221E -PRKDC 5591 genome.wustl.edu 36 8 48912493 48912493 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense P2532S P2532S M 1.1 http://mutationassessor.org?cm=var&var=8,48912493,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PRKDC_HUMAN&rb=2281&re=2764&var=P2532S -KIAA0415 9907 genome.wustl.edu 36 7 4791731 4791731 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense S341F S341F M 1.1 http://mutationassessor.org?cm=var&var=7,4791731,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=K0415_HUMAN&rb=201&re=400&var=S341F -COL6A2 1292 genome.wustl.edu 36 21 46368994 46368994 + missense SNP C C T Unknown Unknown TCGA-06-0644 TCGA-06-0644-10A-01W C C Valid Somatic missense A558V A558V M 1.065 http://mutationassessor.org/?cm=msa&ty=f&p=CO6A2_HUMAN&rb=401&re=600&var=A558V http://mutationassessor.org/pdb.php?prot=CO6A2_HUMAN&from=401&to=600&var=A558V -LYN 4067 genome.wustl.edu 36 8 57025643 57025643 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense A119V A119V M 1.025 http://mutationassessor.org?cm=var&var=8,57025643,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LYN_HUMAN&rb=63&re=123&var=A119V http://mutationassessor.org/pdb.php?prot=LYN_HUMAN&from=63&to=123&var=A119V -PIK3C2A 5286 genome.wustl.edu 36 11 17098009 17098009 + missense SNP C T T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense A916T A916T M 1.01 http://mutationassessor.org?cm=var&var=11,17098009,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2A_HUMAN&rb=863&re=1046&var=A916T http://mutationassessor.org/pdb.php?prot=P3C2A_HUMAN&from=863&to=1046&var=A916T -ERBB2 2064 genome.wustl.edu 36 17 35119867 35119867 + missense SNP A A T Unknown Unknown TCGA-02-0069 TCGA-02-0069-10A-01W A A Valid Somatic missense T216S T216S M 1.01 http://mutationassessor.org?cm=var&var=17,35119867,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=183&re=343&var=T216S http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=183&to=343&var=T216S -LRRN6C 158038 genome.wustl.edu 36 9 27940659 27940659 + missense SNP G A G Unknown Unknown TCGA-02-0068 TCGA-02-0068-10A-01W G G Valid Somatic missense T4M T4M M 1.005 http://mutationassessor.org?cm=var&var=9,27940659,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LIGO2_HUMAN&rb=1&re=200&var=T4M -TRRAP 8295 genome.wustl.edu 36 7 98447697 98447697 + missense SNP A A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W A A Valid Somatic missense D3788G D3788G M 1 http://mutationassessor.org?cm=var&var=7,98447697,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TRRAP_HUMAN&rb=3528&re=3826&var=D3788G -TERT 7015 genome.wustl.edu 36 5 1332521 1332521 + missense SNP C C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense R672H R672H M 0.99 http://mutationassessor.org/?cm=msa&ty=f&p=TERT_HUMAN&rb=649&re=913&var=R672H -ZNF431 170959 genome.wustl.edu 36 19 21157766 21157766 + missense SNP A A C Unknown Unknown TCGA-02-0086 TCGA-02-0086-10A-01W A A Valid Somatic missense T274P T274P L 0.99 http://mutationassessor.org?cm=var&var=19,21157766,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ZN431_HUMAN&rb=260&re=282&var=T274P http://mutationassessor.org/pdb.php?prot=ZN431_HUMAN&from=260&to=282&var=T274P -ZNF384 171017 genome.wustl.edu 36 12 6652748 6652748 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense S214F S214F L 0.975 http://mutationassessor.org?cm=var&var=12,6652748,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=Q7Z722_HUMAN&rb=201&re=223&var=S214F -TNFRSF1B 7133 genome.wustl.edu 36 1 12175619 12175619 + missense SNP A A C Unknown Unknown TCGA-06-0126 TCGA-06-0126-10A-01W A A Valid Somatic missense T222P T222P L 0.975 http://mutationassessor.org?cm=var&var=1,12175619,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TNR1B_HUMAN&rb=119&re=318&var=T222P -KLF4 9314 genome.wustl.edu 36 9 109289919 109289919 + missense SNP C C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense V193M V193M L 0.975 http://mutationassessor.org?cm=var&var=9,109289919,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KLF4_HUMAN&rb=102&re=301&var=V193M -DSP 1832 genome.wustl.edu 36 6 7510676 7510676 + missense SNP A A G Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W A A Valid Somatic missense D288G D288G L 0.96 http://mutationassessor.org?cm=var&var=6,7510676,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DESP_HUMAN&rb=201&re=400&var=D288G http://mutationassessor.org/pdb.php?prot=DESP_HUMAN&from=201&to=400&var=D288G -PIK3CG 5294 genome.wustl.edu 36 7 106311882 106311882 + missense SNP G C G Unknown Unknown TCGA-06-0173 TCGA-06-0173-10B-01W G G Valid Somatic missense C936S C936S L 0.95 http://mutationassessor.org?cm=var&var=7,106311882,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CG_HUMAN&rb=827&re=1044&var=C936S http://mutationassessor.org/pdb.php?prot=PK3CG_HUMAN&from=827&to=1044&var=C936S -ERBB2 2064 genome.wustl.edu 36 17 35116841 35116841 + missense SNP T A T Unknown Unknown TCGA-02-0080 TCGA-02-0080-10A-01W T T Valid Somatic missense L49H L49H L 0.95 http://mutationassessor.org?cm=var&var=17,35116841,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=1&re=200&var=L49H http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=1&to=200&var=L49H -PRKDC 5591 genome.wustl.edu 36 8 48968294 48968294 + missense SNP G A G Unknown Unknown TCGA-08-0373 TCGA-08-0373-11A-01W G G Valid Somatic missense T1269M T1269M L 0.95 http://mutationassessor.org?cm=var&var=8,48968294,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PRKDC_HUMAN&rb=1088&re=1287&var=T1269M -PTEN 5728 genome.wustl.edu 36 10 89707676 89707676 + missense SNP T C T Unknown Unknown TCGA-02-0075 TCGA-02-0075-10A-01W T T Valid Somatic missense F241L F241L L 0.945 http://mutationassessor.org?cm=var&var=10,89707676,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=F241L http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=F241L -ZNF431 170959 genome.wustl.edu 36 19 21118210 21118210 + missense SNP G A G Unknown Unknown TCGA-02-0001 TCGA-02-0001-10A-01W G G Valid Somatic missense G7E G7E L 0.945 http://mutationassessor.org?cm=var&var=19,21118210,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ZN431_HUMAN&rb=1&re=200&var=G7E -NTRK3 4916 genome.wustl.edu 36 15 86377214 86377214 + missense SNP A A G Unknown Unknown TCGA-06-0645 TCGA-06-0645-10A-01W A A Valid Somatic missense I488T I488T L 0.935 http://mutationassessor.org?cm=var&var=15,86377214,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NTRK3_HUMAN&rb=393&re=537&var=I488T -FRAP1 2475 genome.wustl.edu 36 1 11181971 11181971 + missense SNP T C T Unknown Unknown TCGA-08-0353 TCGA-08-0353-11A-01W T T Valid Somatic missense K1395R K1395R L 0.93 http://mutationassessor.org?cm=var&var=1,11181971,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FRAP_HUMAN&rb=1382&re=1982&var=K1395R -PIK3CG 5294 genome.wustl.edu 36 7 106332830 106332830 + missense SNP C A C Unknown Unknown TCGA-08-0244 TCGA-08-0244-11A-01W C C Valid Somatic missense T1024K T1024K L 0.91 http://mutationassessor.org?cm=var&var=7,106332830,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CG_HUMAN&rb=827&re=1044&var=T1024K http://mutationassessor.org/pdb.php?prot=PK3CG_HUMAN&from=827&to=1044&var=T1024K -BCR 613 genome.wustl.edu 36 22 21926057 21926057 + missense SNP G A A Unknown Unknown TCGA-02-0102 TCGA-02-0102-10A-01W G G Valid Somatic missense D451N D451N L 0.895 http://mutationassessor.org?cm=var&var=22,21926057,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BCR_HUMAN&rb=431&re=479&var=D451N -CAMTA1 23261 genome.wustl.edu 36 1 7646054 7646054 + missense SNP C C T Unknown Unknown TCGA-06-0176 TCGA-06-0176-10A-01W C C Valid Somatic missense S287L S287L L 0.895 http://mutationassessor.org?cm=var&var=1,7646054,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CMTA1_HUMAN&rb=184&re=383&var=S287L -NF1 4763 genome.wustl.edu 36 17 26678919 26678919 + missense SNP G A G Unknown Unknown TCGA-06-0214 TCGA-06-0214-10A-01W G G Valid Somatic missense D1849N D1849N L 0.885 http://mutationassessor.org?cm=var&var=17,26678919,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=1801&re=2000&var=D1849N -RPN1 6184 genome.wustl.edu 36 3 129846483 129846483 + missense SNP C C T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C Valid Somatic missense E99K E99K L 0.885 http://mutationassessor.org?cm=var&var=3,129846483,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RPN1_HUMAN&rb=30&re=458&var=E99K -FURIN 5045 genome.wustl.edu 36 15 89225687 89225687 + missense SNP C C T Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C Valid Somatic missense P654S P654S L 0.88 http://mutationassessor.org?cm=var&var=15,89225687,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FURIN_HUMAN&rb=601&re=794&var=P654S -EGFR 1956 genome.wustl.edu 36 7 55200533 55200533 + missense SNP G C C Unknown Unknown TCGA-02-0116 TCGA-02-0116-10A-01W G G Valid Somatic missense A597P A597P L 0.87 http://mutationassessor.org?cm=var&var=7,55200533,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=A597P http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=A597P -MSH2 4436 genome.wustl.edu 36 2 47484039 47484039 + missense SNP C A C Unknown Unknown TCGA-02-0075 TCGA-02-0075-10A-01W C C Valid Somatic missense P69T P69T L 0.85 http://mutationassessor.org/?cm=msa&ty=f&p=MSH2_HUMAN&rb=17&re=132&var=P69T http://mutationassessor.org/pdb.php?prot=MSH2_HUMAN&from=17&to=132&var=P69T -CYP27B1 1594 genome.wustl.edu 36 12 56445112 56445112 + missense SNP G A G Unknown Unknown TCGA-02-0080 TCGA-02-0080-10A-01W G G Valid Somatic missense P247S P247S L 0.845 http://mutationassessor.org?cm=var&var=12,56445112,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CP27B_HUMAN&rb=41&re=505&var=P247S http://mutationassessor.org/pdb.php?prot=CP27B_HUMAN&from=41&to=505&var=P247S -ERBB2 2064 genome.wustl.edu 36 17 35121760 35121760 + missense SNP A A G Unknown Unknown TCGA-02-0116 TCGA-02-0116-10A-01W A A Valid Somatic missense N319D N319D L 0.825 http://mutationassessor.org?cm=var&var=17,35121760,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=183&re=343&var=N319D http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=183&to=343&var=N319D -MLLT7 4303 genome.wustl.edu 36 X 70237836 70237836 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense S344F S344F L 0.82 http://mutationassessor.org?cm=var&var=X,70237836,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FOXO4_HUMAN&rb=202&re=401&var=S344F -PIK3CG 5294 genome.wustl.edu 36 7 106313954 106313954 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense P1004L P1004L L 0.815 http://mutationassessor.org?cm=var&var=7,106313954,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CG_HUMAN&rb=827&re=1044&var=P1004L http://mutationassessor.org/pdb.php?prot=PK3CG_HUMAN&from=827&to=1044&var=P1004L -TSC1 7248 genome.wustl.edu 36 9 134761810 134761810 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense S1043N S1043N L 0.815 http://mutationassessor.org?cm=var&var=9,134761810,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TSC1_HUMAN&rb=821&re=1163&var=S1043N -MADD 8567 genome.wustl.edu 36 11 47262655 47262655 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense S707N S707N L 0.815 http://mutationassessor.org?cm=var&var=11,47262655,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MADD_HUMAN&rb=558&re=757&var=S707N -ADAM12 8038 genome.wustl.edu 36 10 128009005 128009005 + missense SNP T C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T Valid Somatic missense D51G D51G L 0.81 http://mutationassessor.org?cm=var&var=10,128009005,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ADA12_HUMAN&rb=25&re=167&var=D51G -DST 667 genome.wustl.edu 36 6 56581605 56581605 + missense SNP T C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T Valid Somatic missense E1390G E1390G L 0.805 http://mutationassessor.org?cm=var&var=6,56581605,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BPAEB_HUMAN&rb=1378&re=1446&var=E1390G -C20orf160 140706 genome.wustl.edu 36 20 30069280 30069280 + missense SNP C C T Unknown Unknown TCGA-08-0385 TCGA-08-0385-11A-01W C C Valid Somatic missense T72I T72I L 0.795 http://mutationassessor.org?cm=var&var=20,30069280,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CT160_HUMAN&rb=57&re=153&var=T72I -NTRK1 4914 genome.wustl.edu 36 1 155111328 155111328 + missense SNP G A G Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W G G Valid Somatic missense V420M V420M L 0.795 http://mutationassessor.org?cm=var&var=1,155111328,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NTRK1_HUMAN&rb=401&re=509&var=V420M -COL6A2 1292 genome.wustl.edu 36 21 46358384 46358384 + missense SNP C C T Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C Valid Somatic missense P257L P257L L 0.78 http://mutationassessor.org/?cm=msa&ty=f&p=CO6A2_HUMAN&rb=254&re=316&var=P257L -IQSEC3 440073 genome.wustl.edu 36 12 145185 145185 + missense SNP C A C Unknown Unknown TCGA-06-0211 TCGA-06-0211-10A-01W Valid Somatic missense P947T P947T L 0.775 http://mutationassessor.org?cm=var&var=12,145185,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IQEC3_HUMAN&rb=850&re=983&var=P947T -NPTX2 4885 genome.wustl.edu 36 7 98095698 98095698 + missense SNP C A C Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense L373I L373I L 0.77 http://mutationassessor.org?cm=var&var=7,98095698,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NPTX2_HUMAN&rb=224&re=420&var=L373I http://mutationassessor.org/pdb.php?prot=NPTX2_HUMAN&from=224&to=420&var=L373I -KLF6 1316 genome.wustl.edu 36 10 3814279 3814279 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense S77F S77F L 0.77 http://mutationassessor.org?cm=var&var=10,3814279,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KLF6_HUMAN&rb=1&re=143&var=S77F -DST 667 genome.wustl.edu 36 6 56607311 56607311 + missense SNP C C G Unknown Unknown TCGA-06-0148 TCGA-06-0148-10A-01W C C Valid Somatic missense K597N K597N L 0.75 http://mutationassessor.org?cm=var&var=6,56607311,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BPAEB_HUMAN&rb=564&re=616&var=K597N -PML 5371 genome.wustl.edu 36 15 72077554 72077554 + missense SNP C A C Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense P96T P96T L 0.75 http://mutationassessor.org/?cm=msa&ty=f&p=PML_HUMAN&rb=1&re=200&var=P96T http://mutationassessor.org/pdb.php?prot=PML_HUMAN&from=1&to=200&var=P96T -FRZB 2487 genome.wustl.edu 36 2 183439230 183439230 + missense SNP T C T Unknown Unknown TCGA-08-0385 TCGA-08-0385-11A-01W T T Valid Somatic missense D99G D99G L 0.735 http://mutationassessor.org?cm=var&var=2,183439230,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SFRP3_HUMAN&rb=35&re=148&var=D99G http://mutationassessor.org/pdb.php?prot=SFRP3_HUMAN&from=35&to=148&var=D99G -PLAG1 5324 genome.wustl.edu 36 8 57241776 57241776 + missense SNP C C T Unknown Unknown TCGA-02-0055 TCGA-02-0055-10A-01W C C Valid Somatic missense M361I M361I L 0.7 http://mutationassessor.org?cm=var&var=8,57241776,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PLAG1_HUMAN&rb=201&re=400&var=M361I -NBN 4683 genome.wustl.edu 36 8 91017009 91017009 + missense SNP G A G Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W G G Valid Somatic missense P748S P748S L 0.695 http://mutationassessor.org?cm=var&var=8,91017009,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NBN_HUMAN&rb=717&re=754&var=P748S -BCR 613 genome.wustl.edu 36 22 21854424 21854424 + missense SNP C A C Unknown Unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C Valid Somatic missense A426E A426E L 0.685 http://mutationassessor.org?cm=var&var=22,21854424,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BCR_HUMAN&rb=272&re=429&var=A426E -MADD 8567 genome.wustl.edu 36 11 47268322 47268322 + missense SNP G A G Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W G G Valid Somatic missense C1017Y C1017Y L 0.67 http://mutationassessor.org?cm=var&var=11,47268322,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MADD_HUMAN&rb=958&re=1157&var=C1017Y -NF1 4763 genome.wustl.edu 36 17 26581118 26581118 + missense SNP G A G Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G Valid Somatic missense R997K R997K L 0.67 http://mutationassessor.org?cm=var&var=17,26581118,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=801&re=1000&var=R997K -IRS1 3667 genome.wustl.edu 36 2 227370416 227370416 + missense SNP G A G Unknown Unknown TCGA-02-0033 TCGA-02-0033-10A-01W G G Valid Somatic missense S428L S428L L 0.65 http://mutationassessor.org/?cm=msa&ty=f&p=IRS1_HUMAN&rb=263&re=462&var=S428L -GATA6 2627 genome.wustl.edu 36 18 18005575 18005575 + missense SNP G A G Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G Valid Somatic missense G158S G158S L 0.645 http://mutationassessor.org?cm=var&var=18,18005575,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GATA6_HUMAN&rb=147&re=381&var=G158S -COL6A2 1292 genome.wustl.edu 36 21 46356867 46356867 + missense SNP C C T Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C Valid Somatic missense P221L P221L L 0.64 http://mutationassessor.org?cm=var&var=21,46356867,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO6A2_HUMAN&rb=46&re=233&var=P221L -TERT 7015 genome.wustl.edu 36 5 1346683 1346683 + missense SNP C C T Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C Valid Somatic missense E440K E440K L 0.62 http://mutationassessor.org/?cm=msa&ty=f&p=TERT_HUMAN&rb=381&re=458&var=E440K -MDM4 4194 genome.wustl.edu 36 1 202774027 202774027 + missense SNP C C G Unknown Unknown TCGA-06-0129 TCGA-06-0129-10A-01W C C Valid Somatic missense T160S T160S L 0.61 http://mutationassessor.org/?cm=msa&ty=f&p=MDM4_HUMAN&rb=1&re=200&var=T160S -AZGP1 563 genome.wustl.edu 36 7 99407506 99407506 + missense SNP C C T Unknown Unknown TCGA-08-0359 TCGA-08-0359-11A-01W C C Valid Somatic missense A43T A43T L 0.595 http://mutationassessor.org/?cm=msa&ty=f&p=ZA2G_HUMAN&rb=23&re=198&var=A43T http://mutationassessor.org/pdb.php?prot=ZA2G_HUMAN&from=23&to=198&var=A43T -TSC2 7249 genome.wustl.edu 36 16 2038750 2038750 + missense SNP C A C Unknown Unknown TCGA-02-0047 TCGA-02-0047-10A-01W C C Valid Somatic missense L45M L45M L 0.565 http://mutationassessor.org?cm=var&var=16,2038750,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TSC2_HUMAN&rb=1&re=200&var=L45M -ADAMTS20 80070 genome.wustl.edu 36 12 42057487 42057487 + missense SNP C C T Unknown Unknown TCGA-06-0143 TCGA-06-0143-10A-01W C C Valid Somatic missense C1648Y C1648Y L 0.55 http://mutationassessor.org?cm=var&var=12,42057487,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=1589&re=1652&var=C1648Y -MAPKBP1 23005 genome.wustl.edu 36 15 39903140 39903140 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense P1274S P1274S L 0.55 http://mutationassessor.org?cm=var&var=15,39903140,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MABP1_HUMAN&rb=1169&re=1368&var=P1274S -MBD6 114785 genome.wustl.edu 36 12 56208039 56208039 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense P793L P793L L 0.55 http://mutationassessor.org?cm=var&var=12,56208039,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MBD6_HUMAN&rb=601&re=800&var=P793L -LAX1 54900 genome.wustl.edu 36 1 202010148 202010148 + missense SNP A A T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W A A Valid Somatic missense S305C S305C L 0.55 http://mutationassessor.org?cm=var&var=1,202010148,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LAX1_HUMAN&rb=201&re=398&var=S305C -TRRAP 8295 genome.wustl.edu 36 7 98400280 98400280 + missense SNP G A G Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W G G Valid Somatic missense V2301I V2301I L 0.55 http://mutationassessor.org?cm=var&var=7,98400280,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TRRAP_HUMAN&rb=2139&re=2597&var=V2301I -HIPK2 28996 genome.wustl.edu 36 7 138919246 138919246 + missense SNP C C T Unknown Unknown TCGA-02-0089 TCGA-02-0089-10A-01W C C Valid Somatic missense R941H R941H L 0.525 http://mutationassessor.org/?cm=msa&ty=f&p=HIPK2_HUMAN&rb=928&re=1127&var=R941H -MLH1 4292 genome.wustl.edu 36 3 37042321 37042321 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense A410T A410T L 0.49 http://mutationassessor.org?cm=var&var=3,37042321,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MLH1_HUMAN&rb=336&re=519&var=A410T -DGKZ 8525 genome.wustl.edu 36 11 46357659 46357659 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense E1068K E1068K L 0.45 http://mutationassessor.org?cm=var&var=11,46357659,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DGKZ_HUMAN&rb=1001&re=1117&var=E1068K http://mutationassessor.org/pdb.php?prot=DGKZ_HUMAN&from=1001&to=1117&var=E1068K -DST 667 genome.wustl.edu 36 6 56534115 56534115 + missense SNP G A G Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G Valid Somatic missense P2131S P2131S L 0.42 http://mutationassessor.org/?cm=msa&ty=f&p=BPAEA_HUMAN&rb=2101&re=2210&var=P2131S -BCR 613 genome.wustl.edu 36 22 21853559 21853559 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense A138T A138T L 0.39 http://mutationassessor.org/?cm=msa&ty=f&p=BCR_HUMAN&rb=80&re=271&var=A138T -FRAP1 2475 genome.wustl.edu 36 1 11239792 11239792 + missense SNP C C T Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C Valid Somatic missense E97K E97K L 0.385 http://mutationassessor.org?cm=var&var=1,11239792,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FRAP_HUMAN&rb=1&re=195&var=E97K -DST 667 genome.wustl.edu 36 6 56466808 56466808 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense E4162K E4162K L 0.38 http://mutationassessor.org/?cm=msa&ty=f&p=BPAEA_HUMAN&rb=4074&re=4180&var=E4162K -CYP27B1 1594 genome.wustl.edu 36 12 56444898 56444898 + missense SNP C C T Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C Valid Somatic missense G290E G290E L 0.37 http://mutationassessor.org/?cm=msa&ty=f&p=CP27B_HUMAN&rb=41&re=505&var=G290E http://mutationassessor.org/pdb.php?prot=CP27B_HUMAN&from=41&to=505&var=G290E -TNFRSF25 8718 genome.wustl.edu 36 1 6447091 6447091 + missense SNP C C T Unknown Unknown TCGA-08-0244 TCGA-08-0244-11A-01W C C Valid Somatic missense R158K R158K L 0.37 http://mutationassessor.org/?cm=msa&ty=f&p=TNR25_HUMAN&rb=1&re=200&var=R158K http://mutationassessor.org/pdb.php?prot=TNR25_HUMAN&from=1&to=200&var=R158K -C18orf25 147339 genome.wustl.edu 36 18 42074101 42074101 + missense SNP G A G Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W G G Valid Somatic missense G283E G283E L 0.365 http://mutationassessor.org/?cm=msa&ty=f&p=CR025_HUMAN&rb=201&re=400&var=G283E -BAI3 577 genome.wustl.edu 36 6 70149531 70149531 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense P1455S P1455S L 0.36 http://mutationassessor.org/?cm=msa&ty=f&p=BAI3_HUMAN&rb=1401&re=1522&var=P1455S -ABCA1 19 genome.wustl.edu 36 9 106623528 106623528 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense T970I T970I L 0.36 http://mutationassessor.org/?cm=msa&ty=f&p=ABCA1_HUMAN&rb=940&re=1061&var=T970I http://mutationassessor.org/pdb.php?prot=ABCA1_HUMAN&from=940&to=1061&var=T970I -CAMTA1 23261 genome.wustl.edu 36 1 7646348 7646348 + missense SNP C C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense A385V A385V L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=CMTA1_HUMAN&rb=384&re=583&var=A385V -DST 667 genome.wustl.edu 36 6 56591932 56591932 + missense SNP C C T Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W C C Valid Somatic missense G2185D G2185D L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=BPA1_HUMAN&rb=2001&re=2200&var=G2185D -MLL3 58508 genome.wustl.edu 36 7 151490932 151490932 + missense SNP G A G Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G Valid Somatic missense P3555S P3555S L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=MLL3_HUMAN&rb=3401&re=3600&var=P3555S -RCSD1 92241 genome.wustl.edu 36 1 165933141 165933141 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense S219F S219F L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=CPZIP_HUMAN&rb=174&re=256&var=S219F -GRM5 2915 genome.wustl.edu 36 11 88420538 88420538 + missense SNP T C T Unknown Unknown TCGA-06-0143 TCGA-06-0143-10A-01W T T Valid Somatic missense K51E K51E L 0.335 http://mutationassessor.org/?cm=msa&ty=f&p=GRM5_HUMAN&rb=1&re=66&var=K51E http://mutationassessor.org/pdb.php?prot=GRM5_HUMAN&from=1&to=66&var=K51E -COL1A2 1278 genome.wustl.edu 36 7 93875479 93875479 + missense SNP C C T Unknown Unknown TCGA-06-0646 TCGA-06-0646-10A-01W C C Valid Somatic missense P230S P230S L 0.31 http://mutationassessor.org/?cm=msa&ty=f&p=CO1A2_HUMAN&rb=201&re=400&var=P230S http://mutationassessor.org/pdb.php?prot=CO1A2_HUMAN&from=201&to=400&var=P230S -ERBB2 2064 genome.wustl.edu 36 17 35121782 35121782 + missense SNP A A G Unknown Unknown TCGA-02-0115 TCGA-02-0115-10A-01W A A Valid Somatic missense D326G D326G L 0.305 http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=183&re=343&var=D326G http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=183&to=343&var=D326G -BCAS1 8537 genome.wustl.edu 36 20 52007415 52007415 + missense SNP T G T Unknown Unknown TCGA-08-0344 TCGA-08-0344-11A-01W T T Valid Somatic missense H460P H460P L 0.3 http://mutationassessor.org/?cm=msa&ty=f&p=BCAS1_HUMAN&rb=401&re=584&var=H460P -SERPINA3 12 genome.wustl.edu 36 14 94159851 94159851 + missense SNP G A A Unknown Unknown TCGA-06-0210 TCGA-06-0210-10A-01W G G Valid Somatic missense D407N D407N L 0.255 http://mutationassessor.org/?cm=msa&ty=f&p=AACT_HUMAN&rb=51&re=420&var=D407N http://mutationassessor.org/pdb.php?prot=AACT_HUMAN&from=51&to=420&var=D407N -DSG2 1829 genome.wustl.edu 36 18 27354918 27354918 + missense SNP T A T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W T T Valid Somatic missense F124Y F124Y L 0.255 http://mutationassessor.org/?cm=msa&ty=f&p=DSG2_HUMAN&rb=50&re=160&var=F124Y http://mutationassessor.org/pdb.php?prot=DSG2_HUMAN&from=50&to=160&var=F124Y -ZFP106 64397 genome.wustl.edu 36 15 40500582 40500582 + missense SNP C C T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C Valid Somatic missense R1806K R1806K L 0.255 http://mutationassessor.org/?cm=msa&ty=f&p=ZF106_HUMAN&rb=1804&re=1883&var=R1806K -RGS4 5999 genome.wustl.edu 36 1 161310005 161310005 + missense SNP A A C Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W A A Valid Somatic missense N116T N116T L 0.23 http://mutationassessor.org/?cm=msa&ty=f&p=RGS4_HUMAN&rb=62&re=177&var=N116T http://mutationassessor.org/pdb.php?prot=RGS4_HUMAN&from=62&to=177&var=N116T -ZNF384 171017 genome.wustl.edu 36 12 6647289 6647289 + missense SNP T C T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W T T Valid Somatic missense Q412R Q412R L 0.225 http://mutationassessor.org/?cm=msa&ty=f&p=Q7Z722_HUMAN&rb=224&re=423&var=Q412R -NTRK3 4916 genome.wustl.edu 36 15 86528499 86528499 + missense SNP T C T Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W T T Valid Somatic missense N95S N95S L 0.185 http://mutationassessor.org?cm=var&var=15,86528499,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NTRK3_HUMAN&rb=1&re=200&var=N95S http://mutationassessor.org/pdb.php?prot=NTRK3_HUMAN&from=1&to=200&var=N95S -GRM5 2915 genome.wustl.edu 36 11 88420594 88420594 + missense SNP G A G Unknown Unknown TCGA-06-0143 TCGA-06-0143-10A-01W G G Valid Somatic missense P32L P32L L 0.185 http://mutationassessor.org/?cm=msa&ty=f&p=GRM5_HUMAN&rb=1&re=66&var=P32L http://mutationassessor.org/pdb.php?prot=GRM5_HUMAN&from=1&to=66&var=P32L -ADAMTS20 80070 genome.wustl.edu 36 12 42144695 42144695 + missense SNP G A G Unknown Unknown TCGA-12-0620 TCGA-12-0620-10A-01W G G Valid Somatic missense A492V A492V L 0.17 http://mutationassessor.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=468&re=555&var=A492V http://mutationassessor.org/pdb.php?prot=ATS20_HUMAN&from=468&to=555&var=A492V -MAPK7 5598 genome.wustl.edu 36 17 19225977 19225977 + missense SNP G A G Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W G G Valid Somatic missense A590T A590T L 0.145 http://mutationassessor.org/?cm=msa&ty=f&p=MK07_HUMAN&rb=548&re=740&var=A590T -HPN 3249 genome.wustl.edu 36 19 40248402 40248402 + missense SNP G C G Unknown Unknown TCGA-06-0154 TCGA-06-0154-10A-01W Valid Somatic missense E343Q E343Q L 0.14 http://mutationassessor.org/?cm=msa&ty=f&p=HEPS_HUMAN&rb=163&re=400&var=E343Q http://mutationassessor.org/pdb.php?prot=HEPS_HUMAN&from=163&to=400&var=E343Q -GPR176 11245 genome.wustl.edu 36 15 37886593 37886593 + missense SNP T C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T Valid Somatic missense I111V I111V L 0.045 http://mutationassessor.org/?cm=msa&ty=f&p=GP176_HUMAN&rb=58&re=320&var=I111V http://mutationassessor.org/pdb.php?prot=GP176_HUMAN&from=58&to=320&var=I111V -AXL 558 genome.wustl.edu 36 19 46435815 46435815 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense P297S P297S L 0.03 http://mutationassessor.org?cm=var&var=19,46435815,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=UFO_HUMAN&rb=226&re=321&var=P297S -CYP3A4 1576 genome.wustl.edu 36 7 99219616 99219616 + missense SNP T C T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W T T Valid Somatic missense M9V M9V L 0.005 http://mutationassessor.org/?cm=msa&ty=f&p=CP3A4_HUMAN&rb=1&re=200&var=M9V -TSC2 7249 genome.wustl.edu 36 16 2070190 2070190 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense A1141T A1141T N 0 http://mutationassessor.org/?cm=msa&ty=f&p=TSC2_HUMAN&rb=1068&re=1213&var=A1141T -CYLD 1540 genome.wustl.edu 36 16 49341571 49341571 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense A154V A154V N 0 http://mutationassessor.org/?cm=msa&ty=f&p=CYLD_HUMAN&rb=127&re=203&var=A154V http://mutationassessor.org/pdb.php?prot=CYLD_HUMAN&from=127&to=203&var=A154V -SLC45A1 50651 genome.wustl.edu 36 1 8326515 8326515 + missense SNP C C T Unknown Unknown TCGA-06-0128 TCGA-06-0128-10A-01W C C Valid Somatic missense A735V A735V N 0 http://mutationassessor.org/?cm=msa&ty=f&p=S45A1_HUMAN&rb=730&re=782&var=A735V -MLL3 58508 genome.wustl.edu 36 7 151658722 151658722 + missense SNP C C T Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C Valid Somatic missense A96T A96T N 0 http://mutationassessor.org/?cm=msa&ty=f&p=MLL3_HUMAN&rb=1&re=129&var=A96T -PRF1 5551 genome.wustl.edu 36 10 72028330 72028330 + missense SNP G A G Unknown Unknown TCGA-02-0070 TCGA-02-0070-10A-01W G G Valid Somatic missense R385W R385W N 0 http://mutationassessor.org/?cm=msa&ty=f&p=PERF_HUMAN&rb=376&re=408&var=R385W -MN1 4330 genome.wustl.edu 36 22 26522942 26522942 + missense SNP C C T Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C Valid Somatic missense S1197N S1197N N 0 http://mutationassessor.org/?cm=msa&ty=f&p=MN1_HUMAN&rb=1003&re=1253&var=S1197N -COL6A3 1293 genome.wustl.edu 36 2 237909682 237909682 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense V2934M V2934M N 0 http://mutationassessor.org/?cm=msa&ty=f&p=CO6A3_HUMAN&rb=2801&re=3000&var=V2934M -TSC2 7249 genome.wustl.edu 36 16 2064367 2064367 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense V841I V841I N -0.005 http://mutationassessor.org/?cm=msa&ty=f&p=TSC2_HUMAN&rb=550&re=904&var=V841I -GATA3 2625 genome.wustl.edu 36 10 8140468 8140468 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense A146T A146T N -0.01 http://mutationassessor.org/?cm=msa&ty=f&p=GATA3_HUMAN&rb=1&re=200&var=A146T -CDH23 64072 genome.wustl.edu 36 10 73209195 73209195 + missense SNP G A G Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G Valid Somatic missense D1785N D1785N N -0.01 http://mutationassessor.org/?cm=msa&ty=f&p=CAD23_HUMAN&rb=1751&re=1842&var=D1785N -KLF4 9314 genome.wustl.edu 36 9 109287936 109287936 + missense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic missense H487Y H487Y N -0.04 http://mutationassessor.org/?cm=msa&ty=f&p=KLF4_HUMAN&rb=302&re=489&var=H487Y http://mutationassessor.org/pdb.php?prot=KLF4_HUMAN&from=302&to=489&var=H487Y -CYP3A4 1576 genome.wustl.edu 36 7 99219625 99219625 + missense SNP C C T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C Valid Somatic missense D6N D6N N -0.13 http://mutationassessor.org/?cm=msa&ty=f&p=CP3A4_HUMAN&rb=1&re=200&var=D6N -SRGAP1 57522 genome.wustl.edu 36 12 62789003 62789003 + missense SNP C C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C Valid Somatic missense A613V A613V N -0.15 http://mutationassessor.org/?cm=msa&ty=f&p=SRGP1_HUMAN&rb=520&re=672&var=A613V http://mutationassessor.org/pdb.php?prot=SRGP1_HUMAN&from=520&to=672&var=A613V -STYK1 55359 genome.wustl.edu 36 12 10668602 10668602 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense A281T A281T N -0.18 http://mutationassessor.org/?cm=msa&ty=f&p=STYK1_HUMAN&rb=114&re=380&var=A281T http://mutationassessor.org/pdb.php?prot=STYK1_HUMAN&from=114&to=380&var=A281T -CAPN3 825 genome.wustl.edu 36 15 40481252 40481252 + missense SNP C C G Unknown Unknown TCGA-08-0380 TCGA-08-0380-11A-01W C C Valid Somatic missense D492E D492E N -0.26 http://mutationassessor.org/?cm=msa&ty=f&p=CAN3_HUMAN&rb=428&re=582&var=D492E http://mutationassessor.org/pdb.php?prot=CAN3_HUMAN&from=428&to=582&var=D492E -LATS2 26524 genome.wustl.edu 36 13 20460246 20460246 + missense SNP C C T Unknown Unknown TCGA-08-0375 TCGA-08-0375-11A-01W C C Valid Somatic missense R558H R558H N -0.34 http://mutationassessor.org/?cm=msa&ty=f&p=LATS2_HUMAN&rb=401&re=600&var=R558H -PRSS1 5644 genome.wustl.edu 36 7 142139909 142139909 + missense SNP A A G Unknown Unknown TCGA-02-0074 TCGA-02-0074-10A-01W A A Valid Somatic missense K170E K170E N -0.415 http://mutationassessor.org?cm=var&var=7,142139909,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TRY1_HUMAN&rb=24&re=239&var=K170E http://mutationassessor.org/pdb.php?prot=TRY1_HUMAN&from=24&to=239&var=K170E -GATA6 2627 genome.wustl.edu 36 18 18034642 18034642 + missense SNP C C T Unknown Unknown TCGA-02-0007 TCGA-02-0007-10A-01W C C Valid Somatic missense A549V A549V N -0.435 http://mutationassessor.org/?cm=msa&ty=f&p=GATA6_HUMAN&rb=479&re=595&var=A549V -DSG2 1829 genome.wustl.edu 36 18 27365210 27365210 + missense SNP C C T Unknown Unknown TCGA-02-0070 TCGA-02-0070-10A-01W C C Valid Somatic missense A426V A426V N -0.555 http://mutationassessor.org/?cm=msa&ty=f&p=DSG2_HUMAN&rb=396&re=490&var=A426V -MBD6 114785 genome.wustl.edu 36 12 56205965 56205965 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense P316L P316L http://mutationassessor.org?cm=var&var=12,56205965,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MBD6_HUMAN&rb=201&re=400&var=P316L -DSG2 1829 genome.wustl.edu 36 18 27380563 27380563 + missense SNP G C G Unknown Unknown TCGA-08-0373 TCGA-08-0373-11A-01W G G Valid Somatic missense R1072S R1072S http://mutationassessor.org/?cm=msa&ty=f&p=DSG2_HUMAN&rb=1044&re=1118&var=R1072S -RCSD1 92241 genome.wustl.edu 36 1 165933483 165933483 + missense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic missense S333N S333N http://mutationassessor.org/?cm=msa&ty=f&p=CPZIP_HUMAN&rb=301&re=364&var=S333N -ADAMTS20 80070 genome.wustl.edu 36 12 42056174 42056174 + missense SNP T A T Unknown Unknown TCGA-08-0347 TCGA-08-0347-11A-01W T T Valid Somatic missense missense missense -ANXA8 653145 genome.wustl.edu 36 10 47222476 47222476 + missense SNP G A G Unknown Unknown TCGA-06-0130 TCGA-06-0130-10A-01W G G Valid Somatic missense missense missense -ANXA8 653145 genome.wustl.edu 36 10 47224739 47224739 + missense SNP G A G Unknown Unknown TCGA-06-0209 TCGA-06-0209-10A-01W G G Valid Somatic missense missense missense -CENPF 1063 genome.wustl.edu 36 1 212853776 212853776 + missense SNP A A G Unknown Unknown TCGA-02-0055 TCGA-02-0055-10A-01W A A Valid Somatic missense missense missense -DSP 1832 genome.wustl.edu 36 6 7501015 7501015 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense missense missense -DSP 1832 genome.wustl.edu 36 6 7516802 7516802 + missense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic missense missense missense -DST 667 genome.wustl.edu 36 6 56564994 56564994 + missense SNP G C G Unknown Unknown TCGA-06-0125 TCGA-06-0125-10A-01W G G Valid Somatic missense missense missense -DST 667 genome.wustl.edu 36 6 56576971 56576971 + missense SNP C C T Unknown Unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C Valid Somatic missense missense missense -MME 4311 genome.wustl.edu 36 3 156290331 156290331 + missense SNP G A G Unknown Unknown TCGA-06-0185 TCGA-06-0185-10B-01W G G Valid Somatic missense missense missense -NEK10 152110 genome.wustl.edu 36 3 27208682 27208682 + missense SNP T C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T Valid Somatic missense missense missense -PRKDC 5591 genome.wustl.edu 36 8 48968417 48968417 + missense SNP C A C Unknown Unknown TCGA-02-0107 TCGA-02-0107-10A-01W C C Valid Somatic missense missense missense -PRKDC 5591 genome.wustl.edu 36 8 48968417 48968417 + missense SNP C A C Unknown Unknown TCGA-02-0116 TCGA-02-0116-10A-01W C C Valid Somatic missense missense missense -SEMA3B 7869 genome.wustl.edu 36 3 50283416 50283416 + missense SNP C C T Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C Valid Somatic missense missense missense -SEMA3B 7869 genome.wustl.edu 36 3 50288996 50288996 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic missense missense missense -TMEM16E 422973 genome.wustl.edu 36 11 22240376 22240376 + missense SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic missense missense missense -TMEM16E 422973 genome.wustl.edu 36 11 22252830 22252830 + missense SNP A A C Unknown Unknown TCGA-06-0124 TCGA-06-0124-10A-01W A A Valid Somatic missense missense missense -TNFRSF6B 8771 genome.wustl.edu 36 20 61794615 61794615 + missense SNP C C T Unknown Unknown TCGA-02-0021 TCGA-02-0021-10A-01W C C Valid Somatic missense missense missense -PTEN 5728 genome.wustl.edu 36 10 89707658 89707658 + nonsense SNP G G T Unknown Unknown TCGA-02-0113 TCGA-02-0113-10A-01W G G Valid Somatic nonsense E235* E235* -NF1 4763 genome.wustl.edu 36 17 26580304 26580304 + nonsense SNP G G T Unknown Unknown TCGA-02-0075 TCGA-02-0075-10A-01W G G Valid Somatic nonsense G849* G849* -PTEN 5728 genome.wustl.edu 36 10 89682941 89682941 + nonsense SNP C C T Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C Valid Somatic nonsense Q149* Q149* -NF1 4763 genome.wustl.edu 36 17 26686128 26686128 + nonsense SNP C C T Unknown Unknown TCGA-06-0124 TCGA-06-0124-10A-01W C C Valid Somatic nonsense Q1987* Q1987* -PIK3C2A 5286 genome.wustl.edu 36 11 17092564 17092564 + nonsense SNP G A G Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G Valid Somatic nonsense R1081* R1081* -PTEN 5728 genome.wustl.edu 36 10 89682884 89682884 + nonsense SNP C C T Unknown Unknown TCGA-06-0138 TCGA-06-0138-10C-01W C C Valid Somatic nonsense R130* R130* -NF1 4763 genome.wustl.edu 36 17 26612877 26612877 + nonsense SNP C C T Unknown Unknown TCGA-06-0201 TCGA-06-0201-10A-01W C C Valid Somatic nonsense R1534* R1534* -NF1 4763 genome.wustl.edu 36 17 26678679 26678679 + nonsense SNP C T T Unknown Unknown TCGA-02-0070 TCGA-02-0070-10A-01W C C Valid Somatic nonsense R1769* R1769* -NF1 4763 genome.wustl.edu 36 17 26521129 26521129 + nonsense SNP C C T Unknown Unknown TCGA-08-0352 TCGA-08-0352-11A-02W C C Valid Somatic nonsense R192* R192* -TP53 7157 genome.wustl.edu 36 17 7518937 7518937 + nonsense SNP G A G Unknown Unknown TCGA-02-0054 TCGA-02-0054-10A-01W G G Valid Somatic nonsense R213* R213* -NF1 4763 genome.wustl.edu 36 17 26551587 26551587 + nonsense SNP C C T Unknown Unknown TCGA-12-0620 TCGA-12-0620-10A-01W C C Valid Somatic nonsense R304* R304* -TP53 7157 genome.wustl.edu 36 17 7514728 7514728 + nonsense SNP G A G Unknown Unknown TCGA-02-0024 TCGA-02-0024-10A-01W G G Valid Somatic nonsense R342* R342* -FBXW7 55294 genome.wustl.edu 36 4 153471357 153471357 + nonsense SNP G A G Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G Valid Somatic nonsense R367* R367* -IL31 386653 genome.wustl.edu 36 12 121222973 121222973 + nonsense SNP G G T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G Valid Somatic nonsense S145* S145* -NF1 4763 genome.wustl.edu 36 17 26691722 26691722 + nonsense SNP C A C Unknown Unknown TCGA-06-0124 TCGA-06-0124-10A-01W C C Valid Somatic nonsense S2332* S2332* -NF1 4763 genome.wustl.edu 36 17 26677114 26677114 + nonsense SNP G A G Unknown Unknown TCGA-02-0115 TCGA-02-0115-10A-01W G G Valid Somatic nonsense W1662* W1662* -STK36 27148 genome.wustl.edu 36 2 219249113 219249113 + nonsense SNP G A G Unknown Unknown TCGA-02-0014 TCGA-02-0014-10A-01W G G Valid Somatic nonsense W184* W184* -NF1 4763 genome.wustl.edu 36 17 26691678 26691678 + nonsense SNP G A G Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G Valid Somatic nonsense W2317* W2317* -PAPSS2 9060 genome.wustl.edu 36 10 89493273 89493273 + nonsense SNP G A G Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G Valid Somatic nonsense W457* W457* -MET 4233 genome.wustl.edu 36 7 116168234 116168234 + nonsense SNP G A G Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G Valid Somatic nonsense W540* W540* -ESR2 2100 genome.wustl.edu 36 14 63819217 63819217 + nonsense SNP C C T Unknown Unknown TCGA-08-0373 TCGA-08-0373-11A-01W C C Valid Somatic nonsense W80* W80* -PTEN 5728 genome.wustl.edu 36 10 89701893 89701893 + nonsense SNP T G T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W T T Valid Somatic nonsense Y177* Y177* -MOBP 4336 genome.wustl.edu 36 3 39518760 39518760 + nonsense SNP C C T Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C Valid Somatic nonsense nonsense nonsense -MET 4233 genome.wustl.edu 36 7 116199281 116199281 + splice SNP T C T Unknown Unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T Valid Somatic splice splice splice -CDH23 64072 genome.wustl.edu 36 10 73164422 73164422 + splice SNP G A G Unknown Unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G Valid Somatic splice splice splice -CTSH 1512 genome.wustl.edu 36 15 77008808 77008808 + splice SNP C C T Unknown Unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C Valid Somatic splice splice splice -ERBB2 2064 genome.wustl.edu 36 17 35116922 35116922 + splice SNP T A T Unknown Unknown TCGA-02-0115 TCGA-02-0115-10A-01W T T Valid Somatic splice splice splice -LTF 4057 genome.wustl.edu 36 3 46454625 46454625 + splice SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic splice splice splice -NDUFA10 4705 genome.wustl.edu 36 2 240599706 240599706 + splice SNP C C T Unknown Unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C Valid Somatic splice splice splice -NF1 4763 genome.wustl.edu 36 17 26610175 26610175 + splice SNP G A G Unknown Unknown TCGA-02-0033 TCGA-02-0033-10A-01W G G Valid Somatic splice splice splice -PRKDC 5591 genome.wustl.edu 36 8 49032282 49032282 + splice SNP A A C Unknown Unknown TCGA-02-0113 TCGA-02-0113-10A-01W A A Valid Somatic splice splice splice -RB1 5925 genome.wustl.edu 36 13 47945496 47945496 + splice SNP G C G Unknown Unknown TCGA-06-0206 TCGA-06-0206-10A-01W G G Valid Somatic splice splice splice -VAV2 7410 genome.wustl.edu 36 9 135631024 135631024 + splice SNP C C T Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C Valid Somatic splice splice splice -JAG1 182 hgsc.bcm.edu 36 20 10581166 10581166 + missense SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic missense P279L P279L M 1.21 http://mutationassessor.org?cm=var&var=20,10581166,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=JAG1_HUMAN&rb=201&re=400&var=P279L http://mutationassessor.org/pdb.php?prot=JAG1_HUMAN&from=201&to=400&var=P279L -ALDH1A3 220 hgsc.bcm.edu 36 15 99258351 99258351 + missense SNP G G A novel unknown TCGA-02-0089 TCGA-02-0089-10A-01W G G A G G G Unknown Valid Somatic missense G311D G311D H 3.385 http://mutationassessor.org?cm=var&var=15,99258351,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AL1A3_HUMAN&rb=40&re=503&var=G311D http://mutationassessor.org/pdb.php?prot=AL1A3_HUMAN&from=40&to=503&var=G311D -ALDH1A3 220 hgsc.bcm.edu 36 15 99272470 99272470 + missense SNP T T C novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W T T C T T T Unknown Valid Somatic missense V503A V503A H 3.065 http://mutationassessor.org?cm=var&var=15,99272470,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AL1A3_HUMAN&rb=40&re=503&var=V503A http://mutationassessor.org/pdb.php?prot=AL1A3_HUMAN&from=40&to=503&var=V503A -ANK1 286 hgsc.bcm.edu 36 8 41702525 41702525 + missense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense P175S P175S M 1.665 http://mutationassessor.org?cm=var&var=8,41702525,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ANK1_HUMAN&rb=1&re=200&var=P175S http://mutationassessor.org/pdb.php?prot=ANK1_HUMAN&from=1&to=200&var=P175S -ANK1 286 hgsc.bcm.edu 36 8 41638537 41638537 + missense SNP C T T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense G1853E G1853E M 1.375 http://mutationassessor.org?cm=var&var=8,41638537,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ANK1_HUMAN&rb=1688&re=1881&var=G1853E -ANK2 287 broad.mit.edu 36.1 4 114498501 114498501 + missense SNP C C T TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 C C C T C C U Valid Somatic missense T3060I T3060I L 0.975 http://mutationassessor.org?cm=var&var=4,114498501,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ANK2_HUMAN&rb=2970&re=3169&var=T3060I -ANK2 287 broad.mit.edu 36.1 4 114498900 114498900 + missense SNP C C T TCGA-08-0354 TCGA-08-0354-11A-01W-0318-08 C C C T C C U Valid Somatic missense P3193L P3193L L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=ANK2_HUMAN&rb=3170&re=3369&var=P3193L -ANK2 287 broad.mit.edu 36.1 4 114499325 114499325 + missense SNP G G T TCGA-02-0064 TCGA-02-0064-10A-01W-0206-08 G G G T G G U Valid Somatic missense V3335F V3335F N 0 http://mutationassessor.org/?cm=msa&ty=f&p=ANK2_HUMAN&rb=3170&re=3369&var=V3335F -ANXA1 301 hgsc.bcm.edu 36 9 74974800 74974800 + missense SNP G G A novel Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense G333E G333E H 2.975 http://mutationassessor.org?cm=var&var=9,74974800,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ANXA1_HUMAN&rb=277&re=342&var=G333E http://mutationassessor.org/pdb.php?prot=ANXA1_HUMAN&from=277&to=342&var=G333E -ANXA1 301 hgsc.bcm.edu 36 9 74974800 74974800 + missense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense G333E G333E H 2.975 http://mutationassessor.org?cm=var&var=9,74974800,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ANXA1_HUMAN&rb=277&re=342&var=G333E http://mutationassessor.org/pdb.php?prot=ANXA1_HUMAN&from=277&to=342&var=G333E -ANXA7 310 broad.mit.edu 36.1 10 74826987 74826987 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense G104E G104E L 0.895 http://mutationassessor.org?cm=var&var=10,74826987,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ANXA7_HUMAN&rb=1&re=153&var=G104E -APC 324 broad.mit.edu 36.1 5 112204016 112204016 + missense SNP C C T TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 C C C T C C U Valid Somatic missense P1609L P1609L L 0.55 http://mutationassessor.org?cm=var&var=5,112204016,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=APC_HUMAN&rb=1590&re=1635&var=P1609L -ATM 472 broad.mit.edu 36.1 11 107729766 107729766 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense R2912K R2912K M 1.745 http://mutationassessor.org?cm=var&var=11,107729766,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ATM_HUMAN&rb=2711&re=2962&var=R2912K http://mutationassessor.org/pdb.php?prot=ATM_HUMAN&from=2711&to=2962&var=R2912K -ATM 472 broad.mit.edu 36.1 11 107611687 107611687 + missense SNP G A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 G G G A G G U Valid Somatic missense G138R G138R M 1.37 http://mutationassessor.org?cm=var&var=11,107611687,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ATM_HUMAN&rb=5&re=166&var=G138R -ATM 472 broad.mit.edu 36.1 11 107620796 107620796 + missense SNP T C T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 T T C T T T U Valid Somatic missense V245A V245A L 0.235 http://mutationassessor.org/?cm=msa&ty=f&p=ATM_HUMAN&rb=201&re=400&var=V245A -RERE 473 hgsc.bcm.edu 36 1 8338240 8338240 + missense SNP G G A novel Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense P1498L P1498L L 0.895 http://mutationassessor.org?cm=var&var=1,8338240,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RERE_HUMAN&rb=568&re=1566&var=P1498L -ATP1A2 477 hgsc.bcm.edu 36 1 158370985 158370985 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense E639K E639K H 2.295 http://mutationassessor.org?cm=var&var=1,158370985,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AT1A2_HUMAN&rb=368&re=726&var=E639K http://mutationassessor.org/pdb.php?prot=AT1A2_HUMAN&from=368&to=726&var=E639K -ATP6V1E1 529 broad.mit.edu 36.1 22 16455484 16455484 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense G213R G213R L 0.53 http://mutationassessor.org/?cm=msa&ty=f&p=VATE1_HUMAN&rb=18&re=216&var=G213R -ATR 545 broad.mit.edu 36.1 3 143659194 143659194 + nonsense SNP G A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 G G G A G G U Valid Somatic nonsense R2533* R2533* -BRCA2 675 broad.mit.edu 36.1 13 31809542 31809542 + missense SNP T G T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 T T G T T T U Valid Somatic missense I1017S I1017S M 1.04 http://mutationassessor.org?cm=var&var=13,31809542,T,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BRCA2_HUMAN&rb=1002&re=1036&var=I1017S -BRCA2 675 broad.mit.edu 36.1 13 31788650 31788650 + missense SNP G A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 G G A G G G U Valid Somatic missense R18H R18H L 0.79 http://mutationassessor.org?cm=var&var=13,31788650,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BRCA2_HUMAN&rb=1&re=200&var=R18H -BRCA2 675 broad.mit.edu 36.1 13 31809250 31809250 + missense SNP C C T TCGA-06-0169 TCGA-06-0169-10A-01W-0224-08 C C C T C C U Valid Somatic missense P920S P920S L 0.255 http://mutationassessor.org/?cm=msa&ty=f&p=BRCA2_HUMAN&rb=801&re=1000&var=P920S -BTK 695 broad.mit.edu 36.1 X 100497740 100497740 + missense SNP C C T TCGA-06-0184 TCGA-06-0184-10B-01W-0254-08 C C T C C C U Valid Somatic missense A508T A508T H 2.035 http://mutationassessor.org?cm=var&var=X,100497740,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BTK_HUMAN&rb=402&re=651&var=A508T http://mutationassessor.org/pdb.php?prot=BTK_HUMAN&from=402&to=651&var=A508T -DDR1 780 hgsc.bcm.edu 36 6 30967793 30967793 + missense SNP G G A novel unknown TCGA-06-0143 TCGA-06-0143-10A-01W G G A G G G Unknown Valid Somatic missense G234D G234D M 1.875 http://mutationassessor.org?cm=var&var=6,30967793,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DDR1_HUMAN&rb=199&re=367&var=G234D -DDR1 780 hgsc.bcm.edu 36 6 30974762 30974762 + missense SNP C C T novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W C C C T C C Unknown Valid Somatic missense A857V A857V L 0.705 http://mutationassessor.org?cm=var&var=6,30974762,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DDR1_HUMAN&rb=610&re=905&var=A857V http://mutationassessor.org/pdb.php?prot=DDR1_HUMAN&from=610&to=905&var=A857V -CALCA 796 hgsc.bcm.edu 36 11 14947109 14947109 + missense SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic missense P80S P80S L 0.33 http://mutationassessor.org/?cm=msa&ty=f&p=CALC_HUMAN&rb=1&re=123&var=P80S -CAST 831 broad.mit.edu 36.1 5 96132051 96132051 + missense SNP G A G TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 G G G A G G U Valid Somatic missense D694N D694N M 1.13 http://mutationassessor.org?cm=var&var=5,96132051,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ICAL_HUMAN&rb=640&re=708&var=D694N -CAST 831 broad.mit.edu 36.1 5 96112135 96112135 + missense SNP C C T TCGA-02-0043 TCGA-02-0043-10A-01W-0189-08 C C T C C C U Valid Somatic missense A423V A423V L 0.85 http://mutationassessor.org?cm=var&var=5,96112135,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ICAL_HUMAN&rb=369&re=501&var=A423V -RUNX1T1 862 broad.mit.edu 36.1 8 93157428 93157428 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense R10K R10K L 0.17 http://mutationassessor.org/?cm=msa&ty=f&p=MTG8_HUMAN&rb=1&re=119&var=R10K -SERPINA6 866 hgsc.bcm.edu 36 14 93840542 93840542 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense S395N S395N M 1.165 http://mutationassessor.org?cm=var&var=14,93840542,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CBG_HUMAN&rb=41&re=404&var=S395N http://mutationassessor.org/pdb.php?prot=CBG_HUMAN&from=41&to=404&var=S395N -CBL 867 broad.mit.edu 36.1 11 118654485 118654485 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense P428L P428L M 0.995 http://mutationassessor.org?cm=var&var=11,118654485,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CBL_HUMAN&rb=401&re=600&var=P428L http://mutationassessor.org/pdb.php?prot=CBL_HUMAN&from=401&to=600&var=P428L -CBL 867 broad.mit.edu 36.1 11 118661372 118661372 + nonsense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G G A G G U Valid Somatic nonsense W609* W609* -CCK 885 hgsc.bcm.edu 36 3 42280015 42280015 + missense SNP C C T novel unknown TCGA-06-0169 TCGA-06-0169-10A-01W C C C T C C Unknown Valid Somatic missense E38K E38K L 0.815 http://mutationassessor.org?cm=var&var=3,42280015,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CCKN_HUMAN&rb=2&re=115&var=E38K -CDH1 999 hgsc.bcm.edu 36 16 67413594 67413594 + missense SNP C C T novel unknown TCGA-06-0210 TCGA-06-0210-10A-01W C C C T C C Unknown Valid Somatic missense A634V A634V L 0.71 http://mutationassessor.org?cm=var&var=16,67413594,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CADH1_HUMAN&rb=598&re=686&var=A634V http://mutationassessor.org/pdb.php?prot=CADH1_HUMAN&from=598&to=686&var=A634V -CDKN2A 1029 hgsc.bcm.edu 36 9 21961053 21961053 + missense SNP G A A novel Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense A102V A102V M 1.715 http://mutationassessor.org?cm=var&var=9,21961053,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CD2A1_HUMAN&rb=1&re=156&var=A102V http://mutationassessor.org/pdb.php?prot=CD2A1_HUMAN&from=1&to=156&var=A102V -CDKN2A 1029 genome.wustl.edu 36 9 21961124 21961125 + frameshift_del Del GA TC - Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -CDKN2A 1029 hgsc.bcm.edu 36 9 21964782 21964782 + nonsense SNP C C T novel Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic nonsense W15* W15* -CDKN2C 1031 genome.wustl.edu 36 1 51208671 51208671 + frameshift_del Del A A - Unknown Unknown TCGA-06-0646 TCGA-06-0646-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -CHAT 1103 hgsc.bcm.edu 36 10 50497778 50497778 + missense SNP G A A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense G130E G130E M 1.595 http://mutationassessor.org?cm=var&var=10,50497778,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CLAT_HUMAN&rb=130&re=720&var=G130E http://mutationassessor.org/pdb.php?prot=CLAT_HUMAN&from=130&to=720&var=G130E -CHAT 1103 hgsc.bcm.edu 36 10 50505694 50505694 + missense SNP G G A novel unknown TCGA-06-0125 TCGA-06-0125-10A-01W G G A G G G Unknown Valid Somatic missense R323H R323H M 1.05 http://mutationassessor.org?cm=var&var=10,50505694,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CLAT_HUMAN&rb=130&re=720&var=R323H http://mutationassessor.org/pdb.php?prot=CLAT_HUMAN&from=130&to=720&var=R323H -CHEK1 1111 hgsc.bcm.edu 36 11 125008322 125008322 + missense SNP G G A novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G A G G G Unknown Valid Somatic missense R160H R160H L 0.745 http://mutationassessor.org?cm=var&var=11,125008322,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CHK1_HUMAN&rb=9&re=265&var=R160H http://mutationassessor.org/pdb.php?prot=CHK1_HUMAN&from=9&to=265&var=R160H -CHEK1 1111 hgsc.bcm.edu 36 11 125028953 125028953 + splice SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic splice splice splice -CHRNA3 1136 hgsc.bcm.edu 36 15 76680949 76680949 + missense SNP C C T novel unknown TCGA-02-0089 TCGA-02-0089-10A-01W C C C T C C Unknown Valid Somatic missense G362S G362S N -0.055 http://mutationassessor.org/?cm=msa&ty=f&p=ACHA3_HUMAN&rb=248&re=495&var=G362S -CHRNA3 1136 hgsc.bcm.edu 36 15 76680988 76680988 + missense SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic missense P349S P349S N -0.12 http://mutationassessor.org?cm=var&var=15,76680988,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ACHA3_HUMAN&rb=248&re=495&var=P349S -CNTFR 1271 hgsc.bcm.edu 36 9 34542713 34542713 + missense SNP G A A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense T303I T303I L 0.805 http://mutationassessor.org?cm=var&var=9,34542713,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CNTFR_HUMAN&rb=295&re=372&var=T303I -COL1A1 1277 hgsc.bcm.edu 36 17 45627459 45627459 + missense SNP C C T novel Unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C C T C C Unknown Valid Somatic missense G434D G434D H 2.805 http://mutationassessor.org?cm=var&var=17,45627459,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO1A1_HUMAN&rb=416&re=475&var=G434D http://mutationassessor.org/pdb.php?prot=CO1A1_HUMAN&from=416&to=475&var=G434D -COL1A1 1277 hgsc.bcm.edu 36 17 45627459 45627459 + missense SNP C C T novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C C T C C Unknown Valid Somatic missense G434D G434D H 2.805 http://mutationassessor.org?cm=var&var=17,45627459,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO1A1_HUMAN&rb=416&re=475&var=G434D http://mutationassessor.org/pdb.php?prot=CO1A1_HUMAN&from=416&to=475&var=G434D -COL1A1 1277 hgsc.bcm.edu 36 17 45619111 45619111 + missense SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic missense L1235F L1235F H 2.14 http://mutationassessor.org?cm=var&var=17,45619111,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO1A1_HUMAN&rb=1229&re=1464&var=L1235F -COL1A1 1277 hgsc.bcm.edu 36 17 45623200 45623200 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense P774S P774S M 1.68 http://mutationassessor.org?cm=var&var=17,45623200,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO1A1_HUMAN&rb=716&re=788&var=P774S http://mutationassessor.org/pdb.php?prot=CO1A1_HUMAN&from=716&to=788&var=P774S -COL1A1 1277 hgsc.bcm.edu 36 17 45628312 45628312 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense P343S P343S L 0.76 http://mutationassessor.org?cm=var&var=17,45628312,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO1A1_HUMAN&rb=296&re=355&var=P343S -COL1A1 1277 hgsc.bcm.edu 36 17 45630130 45630130 + nonsense SNP G G A novel unknown TCGA-12-0619 TCGA-12-0619-10A-01W G G A G G G Unknown Valid Somatic nonsense R220* R220* -COL3A1 1281 broad.mit.edu 36.1 2 189576733 189576733 + missense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G A G G G U Valid Somatic missense G879D G879D H 3.62 http://mutationassessor.org?cm=var&var=2,189576733,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO3A1_HUMAN&rb=801&re=1000&var=G879D http://mutationassessor.org/pdb.php?prot=CO3A1_HUMAN&from=801&to=1000&var=G879D -COL3A1 1281 broad.mit.edu 36.1 2 189576409 189576409 + missense SNP G A G TCGA-02-0043 TCGA-02-0043-10A-01W-0189-08 G G G A G G U Valid Somatic missense G861S G861S H 3.055 http://mutationassessor.org?cm=var&var=2,189576409,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO3A1_HUMAN&rb=801&re=1000&var=G861S http://mutationassessor.org/pdb.php?prot=CO3A1_HUMAN&from=801&to=1000&var=G861S -COL5A1 1289 broad.mit.edu 36.1 9 136820826 136820826 + missense SNP C C T TCGA-06-0209 TCGA-06-0209-10A-01W-0255-08 C C C T C C U Valid Somatic missense S884F S884F M 1.225 http://mutationassessor.org?cm=var&var=9,136820826,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CO5A1_HUMAN&rb=801&re=1000&var=S884F http://mutationassessor.org/pdb.php?prot=CO5A1_HUMAN&from=801&to=1000&var=S884F -COL11A1 1301 broad.mit.edu 36.1 1 103225800 103225800 + missense SNP G A G TCGA-02-0055 TCGA-02-0055-10A-01W-0189-08 G G G A G G U Valid Somatic missense P827S P827S L 0.935 http://mutationassessor.org?cm=var&var=1,103225800,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=COBA1_HUMAN&rb=808&re=978&var=P827S -CSF1R 1436 hgsc.bcm.edu 36 5 149420674 149420674 + missense SNP C C T novel unknown TCGA-02-0084 TCGA-02-0084-10A-01W C C C T C C Unknown Valid Somatic missense S638N S638N M 1.185 http://mutationassessor.org?cm=var&var=5,149420674,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CSF1R_HUMAN&rb=582&re=910&var=S638N http://mutationassessor.org/pdb.php?prot=CSF1R_HUMAN&from=582&to=910&var=S638N -CSF3R 1441 broad.mit.edu 36.1 1 36707876 36707876 + missense SNP C C T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 C C C T C C U Valid Somatic missense E480K E480K L 0.55 http://mutationassessor.org?cm=var&var=1,36707876,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CSF3R_HUMAN&rb=430&re=522&var=E480K -CSF3R 1441 broad.mit.edu 36.1 1 36704987 36704987 + missense SNP G A G TCGA-06-0241 TCGA-06-0241-10A-01W-0255-08 G G A G G G U Valid Somatic missense T690M T690M N 0 http://mutationassessor.org/?cm=msa&ty=f&p=CSF3R_HUMAN&rb=613&re=812&var=T690M -CSNK1E 1454 broad.mit.edu 36.1 22 37019247 37019247 + missense SNP C C T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C C T C C U Valid Somatic missense G415R G415R http://mutationassessor.org?cm=var&var=22,37019247,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KC1E_HUMAN&rb=401&re=416&var=G415R http://mutationassessor.org/pdb.php?prot=KC1E_HUMAN&from=401&to=416&var=G415R -CYP1B1 1545 hgsc.bcm.edu 36 2 38155074 38155074 + missense SNP G A A novel Unknown TCGA-06-0151 TCGA-06-0151-10A-01W G G A A G G Unknown Valid Somatic missense P321L P321L M 1.225 http://mutationassessor.org?cm=var&var=2,38155074,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CP1B1_HUMAN&rb=51&re=520&var=P321L http://mutationassessor.org/pdb.php?prot=CP1B1_HUMAN&from=51&to=520&var=P321L -CYP27B1 1594 hgsc.bcm.edu 36 12 56445097 56445097 + missense SNP G G A novel unknown TCGA-06-0211 TCGA-06-0211-10A-01W G G A G G G Unknown Valid Somatic missense R252C R252C H 2.085 http://mutationassessor.org?cm=var&var=12,56445097,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CP27B_HUMAN&rb=41&re=505&var=R252C http://mutationassessor.org/pdb.php?prot=CP27B_HUMAN&from=41&to=505&var=R252C -CYP27B1 1594 hgsc.bcm.edu 36 12 56445112 56445112 + missense SNP G G A novel unknown TCGA-02-0080 TCGA-02-0080-10A-01W G G A G G G Unknown Valid Somatic missense P247S P247S L 0.845 http://mutationassessor.org?cm=var&var=12,56445112,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CP27B_HUMAN&rb=41&re=505&var=P247S http://mutationassessor.org/pdb.php?prot=CP27B_HUMAN&from=41&to=505&var=P247S -CYP27B1 1594 broad.mit.edu 36.1 12 56444898 56444898 + missense SNP C C T TCGA-02-0043 TCGA-02-0043-10A-01W-0189-08 C C T C C C U Valid Somatic missense G290E G290E L 0.37 http://mutationassessor.org/?cm=msa&ty=f&p=CP27B_HUMAN&rb=41&re=505&var=G290E http://mutationassessor.org/pdb.php?prot=CP27B_HUMAN&from=41&to=505&var=G290E -CYP27B1 1594 hgsc.bcm.edu 36 12 56444898 56444898 + missense SNP C C T novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C C T C C Unknown Valid Somatic missense G290E G290E L 0.37 http://mutationassessor.org/?cm=msa&ty=f&p=CP27B_HUMAN&rb=41&re=505&var=G290E http://mutationassessor.org/pdb.php?prot=CP27B_HUMAN&from=41&to=505&var=G290E -DBC1 1620 hgsc.bcm.edu 36 9 120969785 120969785 + missense SNP C C T novel unknown TCGA-06-0189 TCGA-06-0189-10A-01W C C C T C C Unknown Valid Somatic missense V562I V562I L 0.375 http://mutationassessor.org/?cm=msa&ty=f&p=DBC1_HUMAN&rb=478&re=677&var=V562I -DBC1 1620 hgsc.bcm.edu 36 9 120969418 120969418 + missense SNP C C T novel Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense G684D G684D N 0 http://mutationassessor.org/?cm=msa&ty=f&p=DBC1_HUMAN&rb=601&re=761&var=G684D -DBC1 1620 hgsc.bcm.edu 36 9 120969418 120969418 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense G684D G684D N 0 http://mutationassessor.org/?cm=msa&ty=f&p=DBC1_HUMAN&rb=601&re=761&var=G684D -DCN 1634 hgsc.bcm.edu 36 12 90074986 90074986 + nonsense SNP G G A novel unknown TCGA-02-0024 TCGA-02-0024-10A-01W G G A G G G Unknown Valid Somatic nonsense Q217* Q217* -DCN 1634 hgsc.bcm.edu 36 12 90076345 90076345 + nonsense SNP G G A novel unknown TCGA-06-0213 TCGA-06-0213-10A-01W G G A G G G Unknown Valid Somatic nonsense R133* R133* -DDIT3 1649 broad.mit.edu 36.1 12 56197363 56197363 + missense SNP C A C TCGA-06-0238 TCGA-06-0238-10A-01W-0323-08 C C C A C C U Valid Somatic missense D32Y D32Y M 1.445 http://mutationassessor.org?cm=var&var=12,56197363,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DDIT3_HUMAN&rb=1&re=169&var=D32Y -DES 1674 broad.mit.edu 36.1 2 219994348 219994348 + missense SNP T A T TCGA-02-0047 TCGA-02-0047-10A-01W-0189-08 T T A T T T U Valid Somatic missense F356I F356I M 1.51 http://mutationassessor.org?cm=var&var=2,219994348,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DESM_HUMAN&rb=107&re=415&var=F356I http://mutationassessor.org/pdb.php?prot=DESM_HUMAN&from=107&to=415&var=F356I -DES 1674 broad.mit.edu 36.1 2 219998918 219998918 + missense SNP G A G TCGA-06-0158 TCGA-06-0158-10A-01W-0254-08 G G A G G G U Valid Somatic missense V459I V459I L 0.735 http://mutationassessor.org?cm=var&var=2,219998918,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DESM_HUMAN&rb=401&re=470&var=V459I -DOCK1 1793 broad.mit.edu 36.1 10 128719946 128719946 + missense SNP A A T TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 A A T A A A U Valid Somatic missense K535M K535M M 1.385 http://mutationassessor.org?cm=var&var=10,128719946,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DOCK1_HUMAN&rb=422&re=664&var=K535M -DOCK1 1793 broad.mit.edu 36.1 10 129073048 129073048 + missense SNP C C T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C T C C C U Valid Somatic missense S1250L S1250L M 1.255 http://mutationassessor.org?cm=var&var=10,129073048,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DOCK1_HUMAN&rb=1111&re=1616&var=S1250L http://mutationassessor.org/pdb.php?prot=DOCK1_HUMAN&from=1111&to=1616&var=S1250L -DOCK1 1793 broad.mit.edu 36.1 10 129121678 129121678 + missense SNP G G T TCGA-06-0152 TCGA-06-0152-10A-01W-0323-08 G G G T G G U Valid Somatic missense D1665Y D1665Y L 0.975 http://mutationassessor.org?cm=var&var=10,129121678,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DOCK1_HUMAN&rb=1601&re=1800&var=D1665Y -EGFR 1956 broad.mit.edu 36.1 7 55200531 55200531 + missense SNP C C T TCGA-08-0380 TCGA-08-0380-11A-01W-0318-08 C C C T C C U Valid Somatic missense P596L P596L H 2.865 http://mutationassessor.org?cm=var&var=7,55200531,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=P596L http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=P596L -EGFR 1956 hgsc.bcm.edu 36 7 55200531 55200531 + missense SNP C C T novel unknown TCGA-08-0380 TCGA-08-0380-11A-01W C C C T C C Unknown Valid Somatic missense P596L P596L H 2.865 http://mutationassessor.org?cm=var&var=7,55200531,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=P596L http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=P596L -EGFR 1956 broad.mit.edu 36.1 7 55178574 55178574 + missense SNP G A G TCGA-08-0390 TCGA-08-0390-11A-01W-0318-08 G G A G G G U Valid Somatic missense R108K R108K H 2.81 http://mutationassessor.org?cm=var&var=7,55178574,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=57&re=168&var=R108K http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=57&to=168&var=R108K -EGFR 1956 hgsc.bcm.edu 36 7 55178574 55178574 + missense SNP G G A novel unknown TCGA-08-0390 TCGA-08-0390-11A-01W G G A G G G Unknown Valid Somatic missense R108K R108K H 2.81 http://mutationassessor.org?cm=var&var=7,55178574,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=57&re=168&var=R108K http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=57&to=168&var=R108K -EGFR 1956 broad.mit.edu 36.1 7 55200537 55200537 + missense SNP G T T TCGA-02-0046 TCGA-02-0046-10A-01W-0189-08 G G T T G G U Valid Somatic missense G598V G598V H 2.37 http://mutationassessor.org?cm=var&var=7,55200537,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=G598V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=G598V -EGFR 1956 broad.mit.edu 36.1 7 55200537 55200537 + missense SNP G G T TCGA-06-0125 TCGA-06-0125-10A-01W-0224-08 G G G T G G U Valid Somatic missense G598V G598V H 2.37 http://mutationassessor.org?cm=var&var=7,55200537,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=G598V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=G598V -EGFR 1956 broad.mit.edu 36.1 7 55200537 55200537 + missense SNP G G T TCGA-12-0616 TCGA-12-0616-10A-01W-0323-08 G G G T G G U Valid Somatic missense G598V G598V H 2.37 http://mutationassessor.org?cm=var&var=7,55200537,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=G598V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=G598V -EGFR 1956 hgsc.bcm.edu 36 7 55200537 55200537 + missense SNP G T T novel Unknown TCGA-02-0046 TCGA-02-0046-10A-01W G G G T G G Unknown Valid Somatic missense G598V G598V H 2.37 http://mutationassessor.org?cm=var&var=7,55200537,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=G598V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=G598V -EGFR 1956 hgsc.bcm.edu 36 7 55200537 55200537 + missense SNP G T T novel unknown TCGA-02-0046 TCGA-02-0046-10A-01W G G G T G G Unknown Valid Somatic missense G598V G598V H 2.37 http://mutationassessor.org?cm=var&var=7,55200537,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=G598V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=G598V -EGFR 1956 hgsc.bcm.edu 36 7 55200537 55200537 + missense SNP G G T novel unknown TCGA-06-0125 TCGA-06-0125-10A-01W G G G T G G Unknown Valid Somatic missense G598V G598V H 2.37 http://mutationassessor.org?cm=var&var=7,55200537,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=G598V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=G598V -EGFR 1956 broad.mit.edu 36.1 7 55191104 55191104 + missense SNP G A G TCGA-08-0349 TCGA-08-0349-11A-02W-0323-08 G G G A G G U Valid Somatic missense C326Y C326Y H 2.365 http://mutationassessor.org?cm=var&var=7,55191104,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=C326Y http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=C326Y -EGFR 1956 hgsc.bcm.edu 36 7 55187768 55187768 + missense SNP C T T novel unknown TCGA-06-0154 TCGA-06-0154-10A-01W C C C T C C Unknown Valid Somatic missense R222C R222C M 1.965 http://mutationassessor.org?cm=var&var=7,55187768,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=R222C http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=R222C -EGFR 1956 broad.mit.edu 36.1 7 55189315 55189315 + missense SNP G A A TCGA-02-0089 TCGA-02-0089-10A-01W-0206-08 G G A A G G U Valid Somatic missense A289T A289T M 1.7 http://mutationassessor.org?cm=var&var=7,55189315,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289T http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289T -EGFR 1956 hgsc.bcm.edu 36 7 55189315 55189315 + missense SNP G A A novel unknown TCGA-02-0089 TCGA-02-0089-10A-01W G G A G G G Unknown Valid Somatic missense A289T A289T M 1.7 http://mutationassessor.org?cm=var&var=7,55189315,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289T http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289T -EGFR 1956 broad.mit.edu 36.1 7 55189316 55189316 + missense SNP C T T TCGA-06-0148 TCGA-06-0148-10A-01W-0224-08 C C C T C C U Valid Somatic missense A289V A289V M 1.7 http://mutationassessor.org?cm=var&var=7,55189316,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289V -EGFR 1956 broad.mit.edu 36.1 7 55189316 55189316 + missense SNP C T T TCGA-06-0148 TCGA-06-0148-10A-01W-0224-08 C C C T C C U Valid Somatic missense A289V A289V M 1.7 http://mutationassessor.org?cm=var&var=7,55189316,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289V -EGFR 1956 broad.mit.edu 36.1 7 55189316 55189316 + missense SNP C T T TCGA-06-0157 TCGA-06-0157-10A-01W-0254-08 C C C T C C U Valid Somatic missense A289V A289V M 1.7 http://mutationassessor.org?cm=var&var=7,55189316,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289V -EGFR 1956 hgsc.bcm.edu 36 7 55189316 55189316 + missense SNP C T T novel unknown TCGA-02-0016 TCGA-02-0016-10A-01W C C T T C C Unknown Valid Somatic missense A289V A289V M 1.7 http://mutationassessor.org?cm=var&var=7,55189316,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289V -EGFR 1956 hgsc.bcm.edu 36 7 55189316 55189316 + missense SNP C T T novel unknown TCGA-02-0023 TCGA-02-0023-10A-01W C C T T C C Unknown Valid Somatic missense A289V A289V M 1.7 http://mutationassessor.org?cm=var&var=7,55189316,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289V -EGFR 1956 hgsc.bcm.edu 36 7 55189316 55189316 + missense SNP C C T novel unknown TCGA-02-0054 TCGA-02-0054-10A-01W C C C T C C Unknown Valid Somatic missense A289V A289V M 1.7 http://mutationassessor.org?cm=var&var=7,55189316,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289V http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289V -EGFR 1956 broad.mit.edu 36.1 7 55189324 55189324 + missense SNP G G T TCGA-06-0127 TCGA-06-0127-10A-01W-0323-08 G G G T G G U Valid Somatic missense V292L V292L M 1.575 http://mutationassessor.org?cm=var&var=7,55189324,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=V292L http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=V292L -EGFR 1956 hgsc.bcm.edu 36 7 55189324 55189324 + missense SNP G G T novel unknown TCGA-06-0127 TCGA-06-0127-10A-01W G G G T G G Unknown Valid Somatic missense V292L V292L M 1.575 http://mutationassessor.org?cm=var&var=7,55189324,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=V292L http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=V292L -EGFR 1956 hgsc.bcm.edu 36 7 55178566 55178566 + missense SNP G G T novel unknown TCGA-08-0390 TCGA-08-0390-11A-01W G G G T G G Unknown Valid Somatic missense Q105H Q105H M 1.53 http://mutationassessor.org?cm=var&var=7,55178566,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=57&re=168&var=Q105H http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=57&to=168&var=Q105H -EGFR 1956 broad.mit.edu 36.1 7 55189204 55189204 + missense SNP C C T TCGA-02-0021 TCGA-02-0021-10A-01W-0189-08 C C C T C C U Valid Somatic missense R252C R252C M 1.495 http://mutationassessor.org?cm=var&var=7,55189204,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=R252C http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=R252C -EGFR 1956 hgsc.bcm.edu 36 7 55189204 55189204 + missense SNP C C T novel unknown TCGA-02-0021 TCGA-02-0021-10A-01W C C C T C C Unknown Valid Somatic missense R252C R252C M 1.495 http://mutationassessor.org?cm=var&var=7,55189204,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=R252C http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=R252C -EGFR 1956 broad.mit.edu 36.1 7 55189217 55189217 + missense SNP A C C TCGA-08-0246 TCGA-08-0246-11A-01W-0318-08 A A C A A A U Valid Somatic missense D256A D256A M 1.47 http://mutationassessor.org?cm=var&var=7,55189217,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=D256A http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=D256A -EGFR 1956 hgsc.bcm.edu 36 7 55189217 55189217 + missense SNP A C C novel unknown TCGA-08-0246 TCGA-08-0246-11A-01W A A A C A A Unknown Valid Somatic missense D256A D256A M 1.47 http://mutationassessor.org?cm=var&var=7,55189217,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=D256A http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=D256A -EGFR 1956 broad.mit.edu 36.1 7 55208201 55208201 + missense SNP G A G TCGA-06-0185 TCGA-06-0185-10B-01W-0254-08 G G G A G G U Valid Somatic missense V651M V651M M 1.345 http://mutationassessor.org?cm=var&var=7,55208201,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=V651M -EGFR 1956 hgsc.bcm.edu 36 7 55208201 55208201 + missense SNP G G A novel unknown TCGA-06-0185 TCGA-06-0185-10B-01W G G A G G G Unknown Valid Somatic missense V651M V651M M 1.345 http://mutationassessor.org?cm=var&var=7,55208201,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=V651M -EGFR 1956 broad.mit.edu 36.1 7 55200603 55200603 + missense SNP G A G TCGA-02-0003 TCGA-02-0003-10A-01W-0189-08 G G A G G G U Valid Somatic missense C620Y C620Y M 1.34 http://mutationassessor.org?cm=var&var=7,55200603,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=C620Y http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=601&to=800&var=C620Y -EGFR 1956 hgsc.bcm.edu 36 7 55200603 55200603 + missense SNP G G A novel Unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G A G G G Unknown Valid Somatic missense C620Y C620Y M 1.34 http://mutationassessor.org?cm=var&var=7,55200603,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=C620Y http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=601&to=800&var=C620Y -EGFR 1956 hgsc.bcm.edu 36 7 55200603 55200603 + missense SNP G G A novel unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G A G G G Unknown Valid Somatic missense C620Y C620Y M 1.34 http://mutationassessor.org?cm=var&var=7,55200603,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=C620Y http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=601&to=800&var=C620Y -EGFR 1956 broad.mit.edu 36.1 7 55208288 55208288 + missense SNP C C G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C G C C C U Valid Somatic missense R680G R680G M 1.31 http://mutationassessor.org?cm=var&var=7,55208288,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=R680G http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=601&to=800&var=R680G -EGFR 1956 hgsc.bcm.edu 36 7 55208288 55208288 + missense SNP C C G novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C G C C Unknown Valid Somatic missense R680G R680G M 1.31 http://mutationassessor.org?cm=var&var=7,55208288,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=601&re=800&var=R680G http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=601&to=800&var=R680G -EGFR 1956 hgsc.bcm.edu 36 7 55189316 55189316 + missense SNP C C A novel unknown TCGA-08-0355 TCGA-08-0355-11A-01W C C A C C C Unknown Valid Somatic missense A289D A289D M 1.195 http://mutationassessor.org?cm=var&var=7,55189316,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=A289D http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=A289D -EGFR 1956 broad.mit.edu 36.1 7 55177569 55177569 + missense SNP T G G TCGA-06-0237 TCGA-06-0237-10A-01W-0255-08 T T G T T T U Valid Somatic missense L62R L62R M 1 http://mutationassessor.org?cm=var&var=7,55177569,T,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=57&re=168&var=L62R http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=57&to=168&var=L62R -EGFR 1956 broad.mit.edu 36.1 7 55189237 55189237 + missense SNP A A C TCGA-02-0007 TCGA-02-0007-10A-01W-0189-08 A A C A A A U Valid Somatic missense T263P T263P L 0.915 http://mutationassessor.org?cm=var&var=7,55189237,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=T263P http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=T263P -EGFR 1956 hgsc.bcm.edu 36 7 55189237 55189237 + missense SNP A A C novel unknown TCGA-02-0007 TCGA-02-0007-10A-01W A A A C A A Unknown Valid Somatic missense T263P T263P L 0.915 http://mutationassessor.org?cm=var&var=7,55189237,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=T263P http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=T263P -EGFR 1956 broad.mit.edu 36.1 7 55200533 55200533 + missense SNP G C C TCGA-02-0116 TCGA-02-0116-10A-01W-0206-08 G G C C G G U Valid Somatic missense A597P A597P L 0.87 http://mutationassessor.org?cm=var&var=7,55200533,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=401&re=600&var=A597P http://mutationassessor.org/pdb.php?prot=EGFR_HUMAN&from=401&to=600&var=A597P -EPHA2 1969 hgsc.bcm.edu 36 1 16347951 16347951 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense G111D G111D M 1.03 http://mutationassessor.org?cm=var&var=1,16347951,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA2_HUMAN&rb=28&re=201&var=G111D http://mutationassessor.org/pdb.php?prot=EPHA2_HUMAN&from=28&to=201&var=G111D -EP300 2033 hgsc.bcm.edu 36 22 39894533 39894533 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense P1337S P1337S M 1.495 http://mutationassessor.org?cm=var&var=22,39894533,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EP300_HUMAN&rb=1306&re=1612&var=P1337S http://mutationassessor.org/pdb.php?prot=EP300_HUMAN&from=1306&to=1612&var=P1337S -EP300 2033 hgsc.bcm.edu 36 22 39904088 39904088 + missense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense A2143T A2143T L 0.49 http://mutationassessor.org/?cm=msa&ty=f&p=EP300_HUMAN&rb=2001&re=2200&var=A2143T -EPHA3 2042 broad.mit.edu 36.1 3 89342222 89342222 + missense SNP G G T TCGA-08-0356 TCGA-08-0356-11A-01W-0318-08 G G G T G G U Valid Somatic missense V226F V226F H 2.005 http://mutationassessor.org?cm=var&var=3,89342222,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA3_HUMAN&rb=201&re=400&var=V226F http://mutationassessor.org/pdb.php?prot=EPHA3_HUMAN&from=201&to=400&var=V226F -EPHA3 2042 broad.mit.edu 36.1 3 89604347 89604347 + missense SNP A A T TCGA-08-0344 TCGA-08-0344-11A-01W-0318-08 A A A T A A U Valid Somatic missense T912S T912S N -0.225 http://mutationassessor.org/?cm=msa&ty=f&p=EPHA3_HUMAN&rb=908&re=973&var=T912S http://mutationassessor.org/pdb.php?prot=EPHA3_HUMAN&from=908&to=973&var=T912S -EPHA7 2045 hgsc.bcm.edu 36 6 94177566 94177566 + missense SNP C C T novel Unknown TCGA-02-0003 TCGA-02-0003-10A-01W C C C T C C Unknown Valid Somatic missense R69Q R69Q H 2.2 http://mutationassessor.org?cm=var&var=6,94177566,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA7_HUMAN&rb=32&re=205&var=R69Q http://mutationassessor.org/pdb.php?prot=EPHA7_HUMAN&from=32&to=205&var=R69Q -EPHA7 2045 hgsc.bcm.edu 36 6 94177566 94177566 + missense SNP C C T novel unknown TCGA-02-0003 TCGA-02-0003-10A-01W C C C T C C Unknown Valid Somatic missense R69Q R69Q H 2.2 http://mutationassessor.org?cm=var&var=6,94177566,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA7_HUMAN&rb=32&re=205&var=R69Q http://mutationassessor.org/pdb.php?prot=EPHA7_HUMAN&from=32&to=205&var=R69Q -EPHA7 2045 hgsc.bcm.edu 36 6 94024697 94024697 + missense SNP G G A novel unknown TCGA-08-0354 TCGA-08-0354-11A-01W G G A G G G Unknown Valid Somatic missense R651C R651C M 1.83 http://mutationassessor.org?cm=var&var=6,94024697,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA7_HUMAN&rb=633&re=890&var=R651C http://mutationassessor.org/pdb.php?prot=EPHA7_HUMAN&from=633&to=890&var=R651C -EPHA7 2045 hgsc.bcm.edu 36 6 94177152 94177152 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense S207F S207F L 0.16 http://mutationassessor.org?cm=var&var=6,94177152,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA7_HUMAN&rb=201&re=400&var=S207F http://mutationassessor.org/pdb.php?prot=EPHA7_HUMAN&from=201&to=400&var=S207F -EPHA8 2046 broad.mit.edu 36.1 1 22788070 22788070 + missense SNP C C T TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 C C C T C C U Valid Somatic missense R367C R367C M 1.07 http://mutationassessor.org?cm=var&var=1,22788070,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA8_HUMAN&rb=330&re=424&var=R367C http://mutationassessor.org/pdb.php?prot=EPHA8_HUMAN&from=330&to=424&var=R367C -EPHA8 2046 broad.mit.edu 36.1 1 22775426 22775426 + missense SNP G A G TCGA-08-0389 TCGA-08-0389-11A-01W-0318-08 G G G A G G U Valid Somatic missense V97I V97I L 0.005 http://mutationassessor.org/?cm=msa&ty=f&p=EPHA8_HUMAN&rb=31&re=204&var=V97I http://mutationassessor.org/pdb.php?prot=EPHA8_HUMAN&from=31&to=204&var=V97I -EPHB1 2047 broad.mit.edu 36.1 3 136403133 136403133 + missense SNP A A G TCGA-06-0185 TCGA-06-0185-10B-01W-0254-08 A A A G A A U Valid Somatic missense N753S N753S M 1.82 http://mutationassessor.org?cm=var&var=3,136403133,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHB1_HUMAN&rb=619&re=878&var=N753S http://mutationassessor.org/pdb.php?prot=EPHB1_HUMAN&from=619&to=878&var=N753S -EPHB4 2050 hgsc.bcm.edu 36 7 100248319 100248319 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense D702N D702N M 1.865 http://mutationassessor.org?cm=var&var=7,100248319,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHB4_HUMAN&rb=615&re=874&var=D702N http://mutationassessor.org/pdb.php?prot=EPHB4_HUMAN&from=615&to=874&var=D702N -EPHB4 2050 hgsc.bcm.edu 36 7 100248764 100248764 + missense SNP T C C novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T C T T T Unknown Valid Somatic missense T587A T587A L 0.33 http://mutationassessor.org/?cm=msa&ty=f&p=EPHB4_HUMAN&rb=520&re=614&var=T587A -EPHB6 2051 hgsc.bcm.edu 36 7 142272042 142272042 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense G121D G121D L 0.04 http://mutationassessor.org?cm=var&var=7,142272042,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHB6_HUMAN&rb=18&re=217&var=G121D http://mutationassessor.org/pdb.php?prot=EPHB6_HUMAN&from=18&to=217&var=G121D -EPHB6 2051 hgsc.bcm.edu 36 7 142276431 142276431 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense A700T A700T N -0.16 http://mutationassessor.org?cm=var&var=7,142276431,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHB6_HUMAN&rb=655&re=900&var=A700T http://mutationassessor.org/pdb.php?prot=EPHB6_HUMAN&from=655&to=900&var=A700T -ERBB2 2064 genome.wustl.edu 36 17 35134527 35134527 + missense SNP T C T Unknown Unknown TCGA-02-0069 TCGA-02-0069-10A-01W T T T C T T Valid Valid Somatic missense V777A V777A M 1.695 http://mutationassessor.org?cm=var&var=17,35134527,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=720&re=976&var=V777A http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=720&to=976&var=V777A -ERBB2 2064 genome.wustl.edu 36 17 35134527 35134527 + missense SNP T C T Unknown Unknown TCGA-02-0113 TCGA-02-0113-10A-01W T T T C Unknown Unknown Unknown Valid Somatic missense V777A V777A M 1.695 http://mutationassessor.org?cm=var&var=17,35134527,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=720&re=976&var=V777A http://mutationassessor.org/pdb.php?prot=ERBB2_HUMAN&from=720&to=976&var=V777A -ERBB3 2065 hgsc.bcm.edu 36 12 54780232 54780232 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense S1046N S1046N L 0.895 http://mutationassessor.org?cm=var&var=12,54780232,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ERBB3_HUMAN&rb=966&re=1165&var=S1046N -EYA1 2138 broad.mit.edu 36.1 8 72319450 72319450 + missense SNP C A C TCGA-12-0618 TCGA-12-0618-10A-01W-0323-08 C C C A C C U Valid Somatic missense R361L R361L M 1.29 http://mutationassessor.org?cm=var&var=8,72319450,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EYA1_HUMAN&rb=322&re=568&var=R361L http://mutationassessor.org/pdb.php?prot=EYA1_HUMAN&from=322&to=568&var=R361L -EYA1 2138 broad.mit.edu 36.1 8 72290418 72290418 + missense SNP G A G TCGA-06-0241 TCGA-06-0241-10A-01W-0255-08 G G G A G G U Valid Somatic missense S487L S487L L 0.565 http://mutationassessor.org/?cm=msa&ty=f&p=EYA1_HUMAN&rb=322&re=568&var=S487L http://mutationassessor.org/pdb.php?prot=EYA1_HUMAN&from=322&to=568&var=S487L -F13A1 2162 broad.mit.edu 36.1 6 6211846 6211846 + missense SNP C C T TCGA-02-0075 TCGA-02-0075-10A-01W-0206-08 C C C T C C U Valid Somatic missense R172Q R172Q M 1.095 http://mutationassessor.org?cm=var&var=6,6211846,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=F13A_HUMAN&rb=168&re=281&var=R172Q http://mutationassessor.org/pdb.php?prot=F13A_HUMAN&from=168&to=281&var=R172Q -F13A1 2162 broad.mit.edu 36.1 6 6211846 6211846 + missense SNP C T T TCGA-02-0075 TCGA-02-0075-10A-01W-0206-08 C C C T C C U Valid Somatic missense R172Q R172Q M 1.095 http://mutationassessor.org?cm=var&var=6,6211846,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=F13A_HUMAN&rb=168&re=281&var=R172Q http://mutationassessor.org/pdb.php?prot=F13A_HUMAN&from=168&to=281&var=R172Q -PTK2B 2185 broad.mit.edu 36.1 8 27349782 27349782 + splice SNP C C T rs17853673 unknown TCGA-08-0358 TCGA-08-0358-11A-03W-0323-08 C T C T T T U Valid Somatic splice splice splice -FGFR1 2260 broad.mit.edu 36.1 8 38391465 38391465 + missense SNP T C T TCGA-02-0060 TCGA-02-0060-10A-01W-0189-08 T T T C T T U Valid Somatic missense K656E K656E H 2.29 http://mutationassessor.org?cm=var&var=8,38391465,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR1_HUMAN&rb=478&re=754&var=K656E http://mutationassessor.org/pdb.php?prot=FGFR1_HUMAN&from=478&to=754&var=K656E -FGFR1 2260 hgsc.bcm.edu 36 8 38391465 38391465 + missense SNP T T C novel unknown TCGA-02-0060 TCGA-02-0060-10A-01W T T C T T T Unknown Valid Somatic missense K656E K656E H 2.29 http://mutationassessor.org?cm=var&var=8,38391465,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR1_HUMAN&rb=478&re=754&var=K656E http://mutationassessor.org/pdb.php?prot=FGFR1_HUMAN&from=478&to=754&var=K656E -FGFR1 2260 hgsc.bcm.edu 36 8 38395035 38395035 + missense SNP G G A novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G A G G G Unknown Valid Somatic missense S433F S433F H 2.145 http://mutationassessor.org?cm=var&var=8,38395035,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR1_HUMAN&rb=359&re=477&var=S433F -FGFR1 2260 broad.mit.edu 36.1 8 38398609 38398609 + missense SNP C C T TCGA-08-0245 TCGA-08-0245-11A-01W-0318-08 C C T C C C U Valid Somatic missense G315E G315E M 1.65 http://mutationassessor.org?cm=var&var=8,38398609,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR1_HUMAN&rb=259&re=358&var=G315E http://mutationassessor.org/pdb.php?prot=FGFR1_HUMAN&from=259&to=358&var=G315E -FGFR1 2260 hgsc.bcm.edu 36 8 38398609 38398609 + missense SNP C C T novel Unknown TCGA-08-0245 TCGA-08-0245-11A-01W C C C T C C Unknown Valid Somatic missense G315E G315E M 1.65 http://mutationassessor.org?cm=var&var=8,38398609,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FGFR1_HUMAN&rb=259&re=358&var=G315E http://mutationassessor.org/pdb.php?prot=FGFR1_HUMAN&from=259&to=358&var=G315E -FGFR4 2264 hgsc.bcm.edu 36 5 176452877 176452877 + missense SNP G G A novel Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense G397D G397D L 0.515 http://mutationassessor.org/?cm=msa&ty=f&p=FGFR4_HUMAN&rb=351&re=466&var=G397D -FGFR4 2264 hgsc.bcm.edu 36 5 176452877 176452877 + missense SNP G G A novel Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense G397D G397D L 0.515 http://mutationassessor.org/?cm=msa&ty=f&p=FGFR4_HUMAN&rb=351&re=466&var=G397D -FGFR4 2264 hgsc.bcm.edu 36 5 176450399 176450399 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense missense missense -FOXO3 2309 broad.mit.edu 36.1 6 108989360 108989360 + missense SNP G C C TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C G G C G G U Valid Somatic missense G86R G86R L 0.38 http://mutationassessor.org?cm=var&var=6,108989360,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FOXO3_HUMAN&rb=1&re=200&var=G86R -FLI1 2313 broad.mit.edu 36.1 11 128143273 128143273 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G A G G G U Valid Somatic missense G94E G94E M 1.675 http://mutationassessor.org?cm=var&var=11,128143273,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FLI1_HUMAN&rb=1&re=200&var=G94E http://mutationassessor.org/pdb.php?prot=FLI1_HUMAN&from=1&to=200&var=G94E -FLI1 2313 broad.mit.edu 36.1 11 128186040 128186040 + missense SNP G A G TCGA-02-0009 TCGA-02-0009-10A-01W-0189-08 G G A G G G U Valid Somatic missense V436I V436I L 0.78 http://mutationassessor.org?cm=var&var=11,128186040,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FLI1_HUMAN&rb=401&re=452&var=V436I -FLT1 2321 hgsc.bcm.edu 36 13 27829760 27829760 + missense SNP C C A novel unknown TCGA-06-0173 TCGA-06-0173-10B-01W C C A C C C Unknown Valid Somatic missense G727C G727C H 3.395 http://mutationassessor.org?cm=var&var=13,27829760,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=VGFR1_HUMAN&rb=661&re=748&var=G727C http://mutationassessor.org/pdb.php?prot=VGFR1_HUMAN&from=661&to=748&var=G727C -FLT1 2321 hgsc.bcm.edu 36 13 27906335 27906335 + missense SNP G G C novel unknown TCGA-02-0048 TCGA-02-0048-10A-01W G G C G G G Unknown Valid Somatic missense P179R P179R M 1.34 http://mutationassessor.org?cm=var&var=13,27906335,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=VGFR1_HUMAN&rb=151&re=214&var=P179R http://mutationassessor.org/pdb.php?prot=VGFR1_HUMAN&from=151&to=214&var=P179R -FLT3 2322 hgsc.bcm.edu 36 13 27542701 27542701 + missense SNP G G A novel unknown TCGA-06-0125 TCGA-06-0125-10A-01W G G A G G G Unknown Valid Somatic missense P31L P31L L 0.505 http://mutationassessor.org/?cm=msa&ty=f&p=FLT3_HUMAN&rb=1&re=200&var=P31L -FN1 2335 broad.mit.edu 36.1 2 215997243 215997243 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense P363S P363S H 2.69 http://mutationassessor.org/?cm=msa&ty=f&p=FINC_HUMAN&rb=360&re=401&var=P363S http://mutationassessor.org/pdb.php?prot=FINC_HUMAN&from=360&to=401&var=P363S -FN1 2335 broad.mit.edu 36.1 2 215948361 215948361 + missense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G G A G G U Valid Somatic missense A1902V A1902V M 1.805 http://mutationassessor.org?cm=var&var=2,215948361,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FINC_HUMAN&rb=1902&re=1991&var=A1902V http://mutationassessor.org/pdb.php?prot=FINC_HUMAN&from=1902&to=1991&var=A1902V -FN1 2335 broad.mit.edu 36.1 2 215948606 215948606 + missense SNP C C T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C C T C C U Valid Somatic missense A1899T A1899T M 1.12 http://mutationassessor.org?cm=var&var=2,215948606,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FINC_HUMAN&rb=1813&re=1901&var=A1899T http://mutationassessor.org/pdb.php?prot=FINC_HUMAN&from=1813&to=1901&var=A1899T -FN1 2335 broad.mit.edu 36.1 2 215998200 215998200 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense missense missense -GAS6 2621 hgsc.bcm.edu 36 13 113583837 113583837 + missense SNP G G A novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G A G G G Unknown Valid Somatic missense S490N S490N N -0.175 http://mutationassessor.org/?cm=msa&ty=f&p=GAS6_HUMAN&rb=368&re=497&var=S490N http://mutationassessor.org/pdb.php?prot=GAS6_HUMAN&from=368&to=497&var=S490N -GDF10 2662 broad.mit.edu 36.1 10 48049503 48049503 + missense SNP G A G TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 G G G A G G U Valid Somatic missense T130M T130M L 0.57 http://mutationassessor.org/?cm=msa&ty=f&p=BMP3B_HUMAN&rb=66&re=239&var=T130M -GLI1 2735 broad.mit.edu 36.1 12 56151942 56151942 + missense SNP C C T TCGA-06-0133 TCGA-06-0133-10A-01W-0224-08 C C T C C C U Valid Somatic missense A1051V A1051V L 0.895 http://mutationassessor.org?cm=var&var=12,56151942,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GLI1_HUMAN&rb=1001&re=1106&var=A1051V -GLI3 2737 hgsc.bcm.edu 36 7 42046363 42046363 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense S276N S276N L 0.725 http://mutationassessor.org?cm=var&var=7,42046363,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GLI3_HUMAN&rb=221&re=429&var=S276N -GNAI1 2770 broad.mit.edu 36.1 7 79671071 79671071 + missense SNP G A G TCGA-06-0209 TCGA-06-0209-10A-01W-0255-08 G G G A G G U Valid Somatic missense D193N D193N M 1.245 http://mutationassessor.org?cm=var&var=7,79671071,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GNAI1_HUMAN&rb=6&re=353&var=D193N http://mutationassessor.org/pdb.php?prot=GNAI1_HUMAN&from=6&to=353&var=D193N -GNAS 2778 hgsc.bcm.edu 36 20 56849073 56849073 + missense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense A173T A173T L 0.755 http://mutationassessor.org?cm=var&var=20,56849073,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GNAS3_HUMAN&rb=1&re=245&var=A173T -GNAS 2778 hgsc.bcm.edu 36 20 56863479 56863479 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -GRLF1 2909 hgsc.bcm.edu 36 19 52115128 52115128 + nonsense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic nonsense W452* W452* -GRM1 2911 hgsc.bcm.edu 36 6 146761745 146761745 + missense SNP C C G novel unknown TCGA-06-0148 TCGA-06-0148-10A-01W C C C G C C Unknown Valid Somatic missense S626C S626C M 1.83 http://mutationassessor.org?cm=var&var=6,146761745,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GRM1_HUMAN&rb=602&re=838&var=S626C -GRM1 2911 hgsc.bcm.edu 36 6 146796940 146796940 + missense SNP G G A novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G A G G G Unknown Valid Somatic missense R967H R967H L 0.205 http://mutationassessor.org/?cm=msa&ty=f&p=GRM1_HUMAN&rb=931&re=1123&var=R967H -CXCL3 2921 hgsc.bcm.edu 36 4 75122717 75122717 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense A89T A89T L 0.835 http://mutationassessor.org/?cm=msa&ty=f&p=CXCL3_HUMAN&rb=34&re=101&var=A89T http://mutationassessor.org/pdb.php?prot=CXCL3_HUMAN&from=34&to=101&var=A89T -GSTM5 2949 broad.mit.edu 36.1 1 110059354 110059354 + missense SNP T C C TCGA-02-0006 TCGA-02-0006-10A-01W-0189-08 C C T C T T U Valid Somatic missense L179P L179P N -1.67 http://mutationassessor.org/?cm=msa&ty=f&p=GSTM5_HUMAN&rb=104&re=192&var=L179P http://mutationassessor.org/pdb.php?prot=GSTM5_HUMAN&from=104&to=192&var=L179P -GSTM5 2949 broad.mit.edu 36.1 1 110059354 110059354 + missense SNP T C T TCGA-02-0006 TCGA-02-0006-10A-01W-0189-08 C C T C T T U Valid Somatic missense L179P L179P N -1.67 http://mutationassessor.org/?cm=msa&ty=f&p=GSTM5_HUMAN&rb=104&re=192&var=L179P http://mutationassessor.org/pdb.php?prot=GSTM5_HUMAN&from=104&to=192&var=L179P -GSTM5 2949 broad.mit.edu 36.1 1 110059354 110059354 + missense SNP T C C TCGA-02-0047 TCGA-02-0047-10A-01W-0189-08 C C T C T T U Valid Somatic missense L179P L179P N -1.67 http://mutationassessor.org/?cm=msa&ty=f&p=GSTM5_HUMAN&rb=104&re=192&var=L179P http://mutationassessor.org/pdb.php?prot=GSTM5_HUMAN&from=104&to=192&var=L179P -GSTM5 2949 broad.mit.edu 36.1 1 110059354 110059354 + missense SNP T C T TCGA-02-0047 TCGA-02-0047-10A-01W-0189-08 C C T C T T U Valid Somatic missense L179P L179P N -1.67 http://mutationassessor.org/?cm=msa&ty=f&p=GSTM5_HUMAN&rb=104&re=192&var=L179P http://mutationassessor.org/pdb.php?prot=GSTM5_HUMAN&from=104&to=192&var=L179P -GSTM5 2949 broad.mit.edu 36.1 1 110059354 110059354 + missense SNP T C C TCGA-06-0150 TCGA-06-0150-10A-01W-0254-08 C T T C T T U Valid Somatic missense L179P L179P N -1.67 http://mutationassessor.org/?cm=msa&ty=f&p=GSTM5_HUMAN&rb=104&re=192&var=L179P http://mutationassessor.org/pdb.php?prot=GSTM5_HUMAN&from=104&to=192&var=L179P -MSH6 2956 hgsc.bcm.edu 36 2 47886856 47886856 + missense SNP C C T novel Unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C C T C C Unknown Valid Somatic missense T1219I T1219I H 3.285 http://mutationassessor.org?cm=var&var=2,47886856,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MSH6_HUMAN&rb=1074&re=1326&var=T1219I http://mutationassessor.org/pdb.php?prot=MSH6_HUMAN&from=1074&to=1326&var=T1219I -MSH6 2956 hgsc.bcm.edu 36 2 47880076 47880076 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense E484K E484K H 2.85 http://mutationassessor.org?cm=var&var=2,47880076,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MSH6_HUMAN&rb=407&re=526&var=E484K http://mutationassessor.org/pdb.php?prot=MSH6_HUMAN&from=407&to=526&var=E484K -MSH6 2956 hgsc.bcm.edu 36 2 47881696 47881696 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense R1024W R1024W H 2.06 http://mutationassessor.org?cm=var&var=2,47881696,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MSH6_HUMAN&rb=730&re=1069&var=R1024W http://mutationassessor.org/pdb.php?prot=MSH6_HUMAN&from=730&to=1069&var=R1024W -MSH6 2956 hgsc.bcm.edu 36 2 47881792 47881792 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense V1056M V1056M M 1.065 http://mutationassessor.org?cm=var&var=2,47881792,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MSH6_HUMAN&rb=730&re=1069&var=V1056M http://mutationassessor.org/pdb.php?prot=MSH6_HUMAN&from=730&to=1069&var=V1056M -GYPA 2993 hgsc.bcm.edu 36 4 145259338 145259338 + missense SNP C C T novel unknown TCGA-08-0375 TCGA-08-0375-11A-01W C C C T C C Unknown Valid Somatic missense A84T A84T L 0.89 http://mutationassessor.org?cm=var&var=4,145259338,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GLPA_HUMAN&rb=28&re=147&var=A84T http://mutationassessor.org/pdb.php?prot=GLPA_HUMAN&from=28&to=147&var=A84T -GYPA 2993 hgsc.bcm.edu 36 4 145257477 145257477 + missense SNP C C T novel unknown TCGA-02-0079 TCGA-02-0079-10A-01W C C C T C C Unknown Valid Somatic missense G113S G113S L 0.045 http://mutationassessor.org/?cm=msa&ty=f&p=GLPA_HUMAN&rb=28&re=147&var=G113S http://mutationassessor.org/pdb.php?prot=GLPA_HUMAN&from=28&to=147&var=G113S -HCK 3055 broad.mit.edu 36.1 20 30152895 30152895 + missense SNP C C T TCGA-06-0646 TCGA-06-0646-10A-01W-0323-08 C C C T C C U Valid Somatic missense P498L P498L H 2.39 http://mutationassessor.org?cm=var&var=20,30152895,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=HCK_HUMAN&rb=262&re=511&var=P498L http://mutationassessor.org/pdb.php?prot=HCK_HUMAN&from=262&to=511&var=P498L -HGF 3082 hgsc.bcm.edu 36 7 81169936 81169936 + missense SNP C C T novel unknown TCGA-08-0390 TCGA-08-0390-11A-01W C C C T C C Unknown Valid Somatic missense R695H R695H M 0.995 http://mutationassessor.org?cm=var&var=7,81169936,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=HGF_HUMAN&rb=495&re=716&var=R695H http://mutationassessor.org/pdb.php?prot=HGF_HUMAN&from=495&to=716&var=R695H -HLA-E 3133 broad.mit.edu 36.1 6 30568302 30568302 + missense SNP G A A TCGA-02-0070 TCGA-02-0070-10A-01W-0318-08 nt nt G A G G U Valid Somatic missense D348N D348N M 1.555 http://mutationassessor.org?cm=var&var=6,30568302,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=HLAE_HUMAN&rb=293&re=358&var=D348N -HLA-E 3133 broad.mit.edu 36.1 6 30568297 30568297 + missense SNP G C C TCGA-02-0070 TCGA-02-0070-10A-01W-0318-08 nt nt C G G G U Valid Somatic missense missense missense -HLA-E 3133 broad.mit.edu 36.1 6 30568297 30568297 + missense SNP G C C TCGA-02-0079 TCGA-02-0079-10A-01W-0323-08 nt nt C G G G U Valid Somatic missense missense missense -HLA-E 3133 broad.mit.edu 36.1 6 30568297 30568297 + missense SNP G C C TCGA-08-0373 TCGA-08-0373-11A-01W-0323-08 nt nt C G G G U Valid Somatic missense missense missense -HPR 3250 hgsc.bcm.edu 36 16 70668449 70668449 + missense SNP C C G rs12646 byFrequency TCGA-02-0114 TCGA-02-0114-10A-01W C C C G C C Unknown Valid Somatic missense D339D D339D N -0.03 http://mutationassessor.org/?cm=msa&ty=f&p=HPTR_HUMAN&rb=104&re=341&var=D339D http://mutationassessor.org/pdb.php?prot=HPTR_HUMAN&from=104&to=341&var=D339D -HSPA8 3312 broad.mit.edu 36.1 11 122435727 122435727 + missense SNP G A A TCGA-08-0375 TCGA-08-0375-11A-01W-0318-08 G G G A G G U Valid Somatic missense R262C R262C H 3.005 http://mutationassessor.org?cm=var&var=11,122435727,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=HSP7C_HUMAN&rb=6&re=612&var=R262C http://mutationassessor.org/pdb.php?prot=HSP7C_HUMAN&from=6&to=612&var=R262C -HSPA8 3312 broad.mit.edu 36.1 11 122435894 122435894 + missense SNP T C C TCGA-02-0070 TCGA-02-0070-10A-01W-0318-08 T T T C T T U Valid Somatic missense D206G D206G H 2.99 http://mutationassessor.org?cm=var&var=11,122435894,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=HSP7C_HUMAN&rb=6&re=612&var=D206G http://mutationassessor.org/pdb.php?prot=HSP7C_HUMAN&from=6&to=612&var=D206G -HSP90AA1 3320 hgsc.bcm.edu 36 14 101617806 101617806 + missense SNP T T C novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T C T T T Unknown Valid Somatic missense D732G D732G H 2.62 http://mutationassessor.org?cm=var&var=14,101617806,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=HS90A_HUMAN&rb=196&re=732&var=D732G -HSP90AA1 3320 hgsc.bcm.edu 36 14 101675353 101675353 + missense SNP G G A novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense P48S P48S -HTR2A 3356 hgsc.bcm.edu 36 13 46367927 46367927 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense T39I T39I L 0.805 http://mutationassessor.org?cm=var&var=13,46367927,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=5HT2A_HUMAN&rb=1&re=90&var=T39I -TNC 3371 broad.mit.edu 36.1 9 116878675 116878675 + missense SNP C T T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C T C C C U Valid Somatic missense G892D G892D M 1.585 http://mutationassessor.org/?cm=msa&ty=f&p=TENA_HUMAN&rb=892&re=983&var=G892D http://mutationassessor.org/pdb.php?prot=TENA_HUMAN&from=892&to=983&var=G892D -TNC 3371 broad.mit.edu 36.1 9 116837402 116837402 + missense SNP C C T TCGA-06-0188 TCGA-06-0188-10B-01D-0373-08 C C C T C C U Valid Somatic missense E1897K E1897K M 1.34 http://mutationassessor.org?cm=var&var=9,116837402,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TENA_HUMAN&rb=1888&re=1964&var=E1897K http://mutationassessor.org/pdb.php?prot=TENA_HUMAN&from=1888&to=1964&var=E1897K -TNC 3371 broad.mit.edu 36.1 9 116888335 116888335 + missense SNP C C T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C T C C C U Valid Somatic missense R499H R499H L 0.44 http://mutationassessor.org?cm=var&var=9,116888335,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TENA_HUMAN&rb=497&re=528&var=R499H -ID3 3399 broad.mit.edu 36.1 1 23758222 23758222 + missense SNP G A A TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense P95S P95S L 0.695 http://mutationassessor.org?cm=var&var=1,23758222,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ID3_HUMAN&rb=82&re=119&var=P95S -ID3 3399 broad.mit.edu 36.1 1 23758222 23758222 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense P95S P95S L 0.695 http://mutationassessor.org?cm=var&var=1,23758222,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ID3_HUMAN&rb=82&re=119&var=P95S -IDH1 3417 genome.wustl.edu 36 2 208821358 208821358 + missense SNP G C G TCGA-06-0221 TCGA-06-0221-10A-01W G G Unknown Unknown Unknown Unknown Valid Somatic missense R132G R132G H 3.27 http://mutationassessor.org?cm=var&var=2,208821358,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132G http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132G -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-02-0010 TCGA-02-0010-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-02-0014 TCGA-02-0014-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-02-0026 TCGA-02-0026-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-02-0028 TCGA-02-0028-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-02-0058 TCGA-02-0058-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-02-0080 TCGA-02-0080-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-06-0128 TCGA-06-0128-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-06-0129 TCGA-06-0129-10A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IDH1 3417 genome.wustl.edu 36 2 208821357 208821357 + missense SNP C T C TCGA-08-0344 TCGA-08-0344-11A-01W C C Unknown Unknown Unknown Unknown Valid Somatic missense R132H R132H H 2.925 http://mutationassessor.org?cm=var&var=2,208821357,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IDHC_HUMAN&rb=9&re=401&var=R132H http://mutationassessor.org/pdb.php?prot=IDHC_HUMAN&from=9&to=401&var=R132H -IFNA21 3452 hgsc.bcm.edu 36 9 21156466 21156466 + missense SNP G G T novel unknown TCGA-02-0099 TCGA-02-0099-10A-01W G G G T G G Unknown Valid Somatic missense P49H P49H M 1.34 http://mutationassessor.org?cm=var&var=9,21156466,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IFN21_HUMAN&rb=1&re=187&var=P49H http://mutationassessor.org/pdb.php?prot=IFN21_HUMAN&from=1&to=187&var=P49H -ILK 3611 hgsc.bcm.edu 36 11 6586561 6586561 + missense SNP A G G novel Unknown TCGA-02-0010 TCGA-02-0010-10A-01W A A A G A A Unknown Valid Somatic missense D138G D138G M 1.175 http://mutationassessor.org?cm=var&var=11,6586561,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ILK_HUMAN&rb=1&re=200&var=D138G http://mutationassessor.org/pdb.php?prot=ILK_HUMAN&from=1&to=200&var=D138G -ILK 3611 hgsc.bcm.edu 36 11 6586561 6586561 + missense SNP A G G novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W A A A G A A Unknown Valid Somatic missense D138G D138G M 1.175 http://mutationassessor.org?cm=var&var=11,6586561,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ILK_HUMAN&rb=1&re=200&var=D138G http://mutationassessor.org/pdb.php?prot=ILK_HUMAN&from=1&to=200&var=D138G -INSR 3643 hgsc.bcm.edu 36 19 7068186 7068186 + missense SNP C C T novel unknown TCGA-08-0385 TCGA-08-0385-11A-01W C C C T C C Unknown Valid Somatic missense D1344N D1344N L 0.88 http://mutationassessor.org?cm=var&var=19,7068186,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=INSR_HUMAN&rb=1201&re=1382&var=D1344N -ISL1 3670 broad.mit.edu 36.1 5 50722999 50722999 + missense SNP G C C TCGA-02-0069 TCGA-02-0069-10A-01W-0206-08 G G G C G G U Valid Somatic missense Q300H Q300H L 0.525 http://mutationassessor.org/?cm=msa&ty=f&p=ISL1_HUMAN&rb=239&re=349&var=Q300H -ITGAL 3683 broad.mit.edu 36.1 16 30398015 30398015 + missense SNP C C T TCGA-08-0353 TCGA-08-0353-11A-01W-0318-08 C C T C C C U Valid Somatic missense R144C R144C L 0.515 http://mutationassessor.org/?cm=msa&ty=f&p=ITAL_HUMAN&rb=1&re=155&var=R144C -ITGB2 3689 broad.mit.edu 36.1 21 45131203 45131203 + missense SNP G A G TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 G G A G G G U Valid Somatic missense missense missense -ITGB2 3689 broad.mit.edu 36.1 21 45144662 45144662 + splice SNP C C T TCGA-06-0158 TCGA-06-0158-10A-01W-0254-08 C C C T C C U Valid Somatic splice splice splice -ITGB3 3690 broad.mit.edu 36.1 17 42724694 42724694 + missense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G G A G G U Valid Somatic missense G484E G484E H 2.92 http://mutationassessor.org?cm=var&var=17,42724694,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ITB3_HUMAN&rb=401&re=600&var=G484E http://mutationassessor.org/pdb.php?prot=ITB3_HUMAN&from=401&to=600&var=G484E -ITGB3 3690 broad.mit.edu 36.1 17 42731868 42731868 + missense SNP C C T TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 C C C T C C U Valid Somatic missense T629I T629I H 2.325 http://mutationassessor.org?cm=var&var=17,42731868,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ITB3_HUMAN&rb=595&re=663&var=T629I http://mutationassessor.org/pdb.php?prot=ITB3_HUMAN&from=595&to=663&var=T629I -ITGB3 3690 broad.mit.edu 36.1 17 42742529 42742529 + missense SNP C C T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C T C C C U Valid Somatic missense A776V A776V M 1.88 http://mutationassessor.org?cm=var&var=17,42742529,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ITB3_HUMAN&rb=742&re=788&var=A776V http://mutationassessor.org/pdb.php?prot=ITB3_HUMAN&from=742&to=788&var=A776V -ITGB3 3690 broad.mit.edu 36.1 17 42723325 42723325 + missense SNP C C T TCGA-06-0141 TCGA-06-0141-10A-01W-0224-08 C C C T C C U Valid Somatic missense R378C R378C M 1.74 http://mutationassessor.org?cm=var&var=17,42723325,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ITB3_HUMAN&rb=38&re=461&var=R378C http://mutationassessor.org/pdb.php?prot=ITB3_HUMAN&from=38&to=461&var=R378C -ITPR3 3710 hgsc.bcm.edu 36 6 33755844 33755844 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense E1394K E1394K M 1.11 http://mutationassessor.org?cm=var&var=6,33755844,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ITPR3_HUMAN&rb=1346&re=1545&var=E1394K -ITPR3 3710 hgsc.bcm.edu 36 6 33752652 33752652 + missense SNP G G A novel Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense E1138K E1138K M 1.09 http://mutationassessor.org/?cm=msa&ty=f&p=ITPR3_HUMAN&rb=1078&re=1170&var=E1138K -ITPR3 3710 hgsc.bcm.edu 36 6 33761460 33761460 + missense SNP C T T novel unknown TCGA-06-0209 TCGA-06-0209-10A-01W C C C T C C Unknown Valid Somatic missense R1849C R1849C L 0.655 http://mutationassessor.org?cm=var&var=6,33761460,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ITPR3_HUMAN&rb=1746&re=1859&var=R1849C -ITPR3 3710 hgsc.bcm.edu 36 6 33765907 33765907 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense T2329I T2329I N -0.275 http://mutationassessor.org/?cm=msa&ty=f&p=ITPR3_HUMAN&rb=2288&re=2516&var=T2329I -KCNG1 3755 hgsc.bcm.edu 36 20 49054656 49054656 + missense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense A290V A290V M 1.14 http://mutationassessor.org?cm=var&var=20,49054656,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KCNG1_HUMAN&rb=270&re=459&var=A290V http://mutationassessor.org/pdb.php?prot=KCNG1_HUMAN&from=270&to=459&var=A290V -KCNJ16 3773 hgsc.bcm.edu 36 17 65640565 65640565 + missense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense V248I V248I L 0.705 http://mutationassessor.org?cm=var&var=17,65640565,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IRK16_HUMAN&rb=37&re=367&var=V248I http://mutationassessor.org/pdb.php?prot=IRK16_HUMAN&from=37&to=367&var=V248I -KDR 3791 hgsc.bcm.edu 36 4 55671614 55671614 + missense SNP G G A novel Unknown TCGA-06-0188 TCGA-06-0188-10B-01W G G A G G G Unknown Valid Somatic missense A352V A352V N -0.445 http://mutationassessor.org/?cm=msa&ty=f&p=VGFR2_HUMAN&rb=334&re=417&var=A352V http://mutationassessor.org/pdb.php?prot=VGFR2_HUMAN&from=334&to=417&var=A352V -KIT 3815 broad.mit.edu 36.1 4 55288766 55288766 + missense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G G A G G U Valid Somatic missense A599T A599T H 2.785 http://mutationassessor.org?cm=var&var=4,55288766,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KIT_HUMAN&rb=589&re=924&var=A599T http://mutationassessor.org/pdb.php?prot=KIT_HUMAN&from=589&to=924&var=A599T -KIT 3815 hgsc.bcm.edu 36 4 55288766 55288766 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense A599T A599T H 2.785 http://mutationassessor.org?cm=var&var=4,55288766,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KIT_HUMAN&rb=589&re=924&var=A599T http://mutationassessor.org/pdb.php?prot=KIT_HUMAN&from=589&to=924&var=A599T -KIT 3815 broad.mit.edu 36.1 4 55256515 55256515 + missense SNP G A G TCGA-06-0644 TCGA-06-0644-10A-01W-0323-08 G G G A G G U Valid Somatic missense V50M V50M L 0.73 http://mutationassessor.org?cm=var&var=4,55256515,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KIT_HUMAN&rb=27&re=112&var=V50M http://mutationassessor.org/pdb.php?prot=KIT_HUMAN&from=27&to=112&var=V50M -KPNA2 3838 broad.mit.edu 36.1 17 63463748 63463748 + missense SNP G A G TCGA-06-0141 TCGA-06-0141-10A-01W-0224-08 A G A G G G U Valid Somatic missense R13H R13H M 1.49 http://mutationassessor.org?cm=var&var=17,63463748,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IMA2_HUMAN&rb=5&re=99&var=R13H http://mutationassessor.org/pdb.php?prot=IMA2_HUMAN&from=5&to=99&var=R13H -KTN1 3895 broad.mit.edu 36.1 14 55148856 55148856 + missense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G G A G G U Valid Somatic missense E113K E113K M 1.005 http://mutationassessor.org?cm=var&var=14,55148856,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KTN1_HUMAN&rb=1&re=200&var=E113K -LAMP1 3916 broad.mit.edu 36.1 13 113008879 113008879 + missense SNP C C G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C G C C U Valid Somatic missense S47C S47C M 1.35 http://mutationassessor.org?cm=var&var=13,113008879,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LAMP1_HUMAN&rb=1&re=200&var=S47C -LAMP1 3916 broad.mit.edu 36.1 13 113021973 113021973 + splice SNP G A G TCGA-02-0116 TCGA-02-0116-10A-01W-0206-08 G G G A G G U Valid Somatic splice splice splice -LGALS3BP 3959 broad.mit.edu 36.1 17 74479275 74479275 + missense SNP G A G TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 G G G A G G U Valid Somatic missense T579I T579I M 1.01 http://mutationassessor.org?cm=var&var=17,74479275,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LG3BP_HUMAN&rb=401&re=584&var=T579I -LGALS3BP 3959 broad.mit.edu 36.1 17 74479447 74479447 + missense SNP C C T TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 C C T C C C U Valid Somatic missense A522T A522T L 0.725 http://mutationassessor.org?cm=var&var=17,74479447,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LG3BP_HUMAN&rb=401&re=584&var=A522T -LGALS3BP 3959 broad.mit.edu 36.1 17 74480082 74480082 + missense SNP C C T TCGA-08-0344 TCGA-08-0344-11A-01W-0318-08 C C C T C C U Valid Somatic missense R310K R310K L 0.45 http://mutationassessor.org/?cm=msa&ty=f&p=LG3BP_HUMAN&rb=260&re=360&var=R310K -LUM 4060 hgsc.bcm.edu 36 12 90026552 90026552 + missense SNP G G T novel unknown TCGA-06-0143 TCGA-06-0143-10A-01W G G G T G G Unknown Valid Somatic missense F112L F112L M 1.915 http://mutationassessor.org?cm=var&var=12,90026552,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LUM_HUMAN&rb=60&re=146&var=F112L http://mutationassessor.org/pdb.php?prot=LUM_HUMAN&from=60&to=146&var=F112L -LUM 4060 hgsc.bcm.edu 36 12 90026506 90026506 + missense SNP G G T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G G T G G Unknown Valid Somatic missense L128M L128M L 0.695 http://mutationassessor.org?cm=var&var=12,90026506,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LUM_HUMAN&rb=117&re=142&var=L128M -LUM 4060 hgsc.bcm.edu 36 12 90026506 90026506 + missense SNP G G T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G G T G G Unknown Valid Somatic missense L128M L128M L 0.695 http://mutationassessor.org?cm=var&var=12,90026506,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LUM_HUMAN&rb=117&re=142&var=L128M -LUM 4060 hgsc.bcm.edu 36 12 90026506 90026506 + missense SNP G G T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G G T G G Unknown Valid Somatic missense L128M L128M L 0.695 http://mutationassessor.org?cm=var&var=12,90026506,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LUM_HUMAN&rb=117&re=142&var=L128M -LUM 4060 hgsc.bcm.edu 36 12 90026506 90026506 + missense SNP G G T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G G T G G Unknown Valid Somatic missense L128M L128M L 0.695 http://mutationassessor.org?cm=var&var=12,90026506,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LUM_HUMAN&rb=117&re=142&var=L128M -LUM 4060 hgsc.bcm.edu 36 12 90026506 90026506 + missense SNP G G T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G G T G G Unknown Valid Somatic missense L128M L128M L 0.695 http://mutationassessor.org?cm=var&var=12,90026506,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LUM_HUMAN&rb=117&re=142&var=L128M -LUM 4060 hgsc.bcm.edu 36 12 90026506 90026506 + missense SNP G G T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W G G G T G G Unknown Valid Somatic missense L128M L128M L 0.695 http://mutationassessor.org?cm=var&var=12,90026506,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LUM_HUMAN&rb=117&re=142&var=L128M -SMAD4 4089 broad.mit.edu 36.1 18 46858703 46858703 + nonsense SNP G A G TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 G G G A G G U Valid Somatic nonsense W509* W509* -MAG 4099 broad.mit.edu 36.1 19 40485323 40485323 + missense SNP C C T TCGA-06-0174 TCGA-06-0174-10B-01W-0254-08 C C C T C C U Valid Somatic missense T368M T368M L 0.78 http://mutationassessor.org?cm=var&var=19,40485323,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MAG_HUMAN&rb=329&re=409&var=T368M http://mutationassessor.org/pdb.php?prot=MAG_HUMAN&from=329&to=409&var=T368M -MAN1A1 4121 hgsc.bcm.edu 36 6 119552603 119552603 + missense SNP C C T novel unknown TCGA-06-0178 TCGA-06-0178-10B-01W C C C T C C Unknown Valid Somatic missense E491K E491K L 0.905 http://mutationassessor.org/?cm=msa&ty=f&p=MA1A1_HUMAN&rb=202&re=640&var=E491K http://mutationassessor.org/pdb.php?prot=MA1A1_HUMAN&from=202&to=640&var=E491K -MAP2 4133 hgsc.bcm.edu 36 2 210226252 210226252 + missense SNP G G A novel unknown TCGA-06-0238 TCGA-06-0238-10A-01W G G A G G G Unknown Valid Somatic missense G38E G38E M 1.28 http://mutationassessor.org?cm=var&var=2,210226252,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MAP2_HUMAN&rb=1&re=200&var=G38E -MARK1 4139 broad.mit.edu 36.1 1 218875861 218875861 + missense SNP G A G TCGA-08-0385 TCGA-08-0385-11A-01W-0318-08 G G A G G G U Valid Somatic missense S447N S447N L 0.65 http://mutationassessor.org?cm=var&var=1,218875861,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MARK1_HUMAN&rb=374&re=522&var=S447N -MARK1 4139 broad.mit.edu 36.1 1 218875890 218875890 + missense SNP G G T TCGA-08-0344 TCGA-08-0344-11A-01W-0318-08 G G G T G G U Valid Somatic missense V457L V457L N -0.025 http://mutationassessor.org/?cm=msa&ty=f&p=MARK1_HUMAN&rb=374&re=522&var=V457L -CD46 4179 hgsc.bcm.edu 36 1 206025059 206025059 + missense SNP A A G novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W A A A G A A Unknown Valid Somatic missense I350V I350V L 0.41 http://mutationassessor.org?cm=var&var=1,206025059,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MCP_HUMAN&rb=201&re=392&var=I350V -MDM2 4193 broad.mit.edu 36.1 12 67516737 67516737 + missense SNP T C T TCGA-02-0085 TCGA-02-0085-10A-01W-0206-08 T T T C T T U Valid Somatic missense Y281H Y281H M 1.26 http://mutationassessor.org?cm=var&var=12,67516737,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MDM2_HUMAN&rb=201&re=400&var=Y281H -MDM4 4194 broad.mit.edu 36.1 1 202774027 202774027 + missense SNP C C G TCGA-06-0129 TCGA-06-0129-10A-01W-0224-08 C C C G C C U Valid Somatic missense T160S T160S L 0.61 http://mutationassessor.org/?cm=msa&ty=f&p=MDM4_HUMAN&rb=1&re=200&var=T160S -MDM4 4194 hgsc.bcm.edu 36 1 202774027 202774027 + missense SNP C C G novel unknown TCGA-06-0129 TCGA-06-0129-10A-01W C C C G C C Unknown Valid Somatic missense T160S T160S L 0.61 http://mutationassessor.org/?cm=msa&ty=f&p=MDM4_HUMAN&rb=1&re=200&var=T160S -MET 4233 broad.mit.edu 36.1 7 116206205 116206205 + missense SNP G C G TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 G G C G G G U Valid Somatic missense M1160I M1160I H 2.595 http://mutationassessor.org?cm=var&var=7,116206205,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MET_HUMAN&rb=1078&re=1337&var=M1160I http://mutationassessor.org/pdb.php?prot=MET_HUMAN&from=1078&to=1337&var=M1160I -MET 4233 hgsc.bcm.edu 36 7 116206205 116206205 + missense SNP G G C novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G C G G G Unknown Valid Somatic missense M1160I M1160I H 2.595 http://mutationassessor.org?cm=var&var=7,116206205,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MET_HUMAN&rb=1078&re=1337&var=M1160I http://mutationassessor.org/pdb.php?prot=MET_HUMAN&from=1078&to=1337&var=M1160I -MET 4233 hgsc.bcm.edu 36 7 116168234 116168234 + nonsense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic nonsense W540* W540* -MET 4233 hgsc.bcm.edu 36 7 116199281 116199281 + splice SNP T T C novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T C T T T Unknown Valid Somatic splice splice splice -MMP15 4324 hgsc.bcm.edu 36 16 56636666 56636666 + missense SNP G G A rs3743563 byCluster;byFrequency;byHapMap TCGA-08-0358 TCGA-08-0358-11A-03W G G A G G G Unknown Valid Somatic missense G609R G609R L 0.57 http://mutationassessor.org/?cm=msa&ty=f&p=MMP15_HUMAN&rb=600&re=669&var=G609R -MSI1 4440 broad.mit.edu 36.1 12 119280036 119280036 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C T C C C U Valid Somatic missense C167Y C167Y M 1.765 http://mutationassessor.org?cm=var&var=12,119280036,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MSI1H_HUMAN&rb=111&re=180&var=C167Y http://mutationassessor.org/pdb.php?prot=MSI1H_HUMAN&from=111&to=180&var=C167Y -MSI1 4440 broad.mit.edu 36.1 12 119286911 119286911 + missense SNP C C T TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 C C T C C C U Valid Somatic missense A100T A100T http://mutationassessor.org/?cm=msa&ty=f&p=MSI1H_HUMAN&rb=20&re=110&var=A100T http://mutationassessor.org/pdb.php?prot=MSI1H_HUMAN&from=20&to=110&var=A100T -MTAP 4507 broad.mit.edu 36.1 9 21827925 21827925 + missense SNP G C G TCGA-06-0156 TCGA-06-0156-10A-01W-0254-08 G G G C G G U Valid Somatic missense Q122H Q122H M 1.335 http://mutationassessor.org?cm=var&var=9,21827925,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MTAP_HUMAN&rb=11&re=256&var=Q122H http://mutationassessor.org/pdb.php?prot=MTAP_HUMAN&from=11&to=256&var=Q122H -MYCN 4613 broad.mit.edu 36.1 2 15999768 15999768 + missense SNP C C T TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 C C C T C C U Valid Somatic missense P44L P44L M 1.45 http://mutationassessor.org?cm=var&var=2,15999768,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MYCN_HUMAN&rb=8&re=372&var=P44L -NEFL 4747 hgsc.bcm.edu 36 8 24867048 24867048 + missense SNP C C T novel Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -NEFL 4747 hgsc.bcm.edu 36 8 24867048 24867048 + missense SNP C C T novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -NELL2 4753 broad.mit.edu 36.1 12 43212631 43212631 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense missense missense -NF1 4763 genome.wustl.edu 36 17 26576290 26576290 + frameshift_del Del G G - Unknown Unknown TCGA-06-0210 TCGA-06-0210-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -NF1 4763 genome.wustl.edu 36 17 26677105 26677108 + frameshift_del Del CTCT CTCT - Unknown Unknown TCGA-02-0107 TCGA-02-0107-10A-01W CTCT CTCT CTCT - CTCT CTCT Valid Valid Somatic frameshift_del frameshift_del frameshift_del -NF1 4763 genome.wustl.edu 36 17 26689934 26689934 + frameshift_del Del G G - Unknown Unknown TCGA-06-0184 TCGA-06-0184-10B-01W G G G - G G Valid Valid Somatic frameshift_del frameshift_del frameshift_del -NF1 4763 genome.wustl.edu 36 17 26691739 26691739 + frameshift_del Del C C - Unknown Unknown TCGA-02-0086 TCGA-02-0086-10A-01W C C C - C C Valid Valid Somatic frameshift_del frameshift_del frameshift_del -NF1 4763 genome.wustl.edu 36 17 26577610 26577611 + frameshift_ins Ins - - C Unknown Unknown TCGA-06-0176 TCGA-06-0176-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_ins frameshift_ins frameshift_ins -NF1 4763 genome.wustl.edu 36 17 26688511 26688511 + splice SNP G A G Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Valid Valid Somatic splice splice splice -NF1 4763 genome.wustl.edu 36 17 26574560 26574598 + splice Del AGTAACAATGAACTTTATGTTACTGCAGCTCACAAATGC AGTAACAATGAACTTTATGTTACTGCAGCTCACAAATGC - Unknown Unknown TCGA-02-0001 TCGA-02-0001-10A-01W AGTAACAATGAACTTTATGTTACTGCAGCTCACAAATGC AGTAACAATGAACTTTATGTTACTGCAGCTCACAAATGC AGTAACAATGAACTTTATGTTACTGCAGCTCACAAATGC - Unknown Unknown Unknown Valid Somatic splice splice splice -NMBR 4829 hgsc.bcm.edu 36 6 142451232 142451232 + missense SNP G G A novel Unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense A86V A86V H 3.1 http://mutationassessor.org?cm=var&var=6,142451232,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NMBR_HUMAN&rb=60&re=324&var=A86V http://mutationassessor.org/pdb.php?prot=NMBR_HUMAN&from=60&to=324&var=A86V -NMBR 4829 hgsc.bcm.edu 36 6 142451232 142451232 + missense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense A86V A86V H 3.1 http://mutationassessor.org?cm=var&var=6,142451232,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NMBR_HUMAN&rb=60&re=324&var=A86V http://mutationassessor.org/pdb.php?prot=NMBR_HUMAN&from=60&to=324&var=A86V -NMBR 4829 hgsc.bcm.edu 36 6 142441713 142441713 + missense SNP G G T novel Unknown TCGA-06-0178 TCGA-06-0178-10B-01W G G G T G G Unknown Valid Somatic missense P148H P148H M 1.925 http://mutationassessor.org?cm=var&var=6,142441713,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NMBR_HUMAN&rb=60&re=324&var=P148H http://mutationassessor.org/pdb.php?prot=NMBR_HUMAN&from=60&to=324&var=P148H -NMBR 4829 hgsc.bcm.edu 36 6 142441713 142441713 + missense SNP G G T novel unknown TCGA-06-0178 TCGA-06-0178-10B-01W G G G T G G Unknown Valid Somatic missense P148H P148H M 1.925 http://mutationassessor.org?cm=var&var=6,142441713,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NMBR_HUMAN&rb=60&re=324&var=P148H http://mutationassessor.org/pdb.php?prot=NMBR_HUMAN&from=60&to=324&var=P148H -NOS3 4846 genome.wustl.edu 36 7 150324884 150324885 + frameshift_ins Ins - - G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_ins frameshift_ins frameshift_ins -NOTCH1 4851 genome.wustl.edu 36 9 138532894 138532896 + inframe_del Del AGG CCT - Unknown Unknown TCGA-02-0026 TCGA-02-0026-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -NOTCH4 4855 hgsc.bcm.edu 36 6 32295505 32295505 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense S451F S451F M 1.01 http://mutationassessor.org?cm=var&var=6,32295505,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NOTC4_HUMAN&rb=432&re=474&var=S451F http://mutationassessor.org/pdb.php?prot=NOTC4_HUMAN&from=432&to=474&var=S451F -NRAP 4892 hgsc.bcm.edu 36 10 115381301 115381301 + missense SNP G A A novel unknown TCGA-02-0014 TCGA-02-0014-10A-01W G G A G G G Unknown Valid Somatic missense S600F S600F L 0.855 http://mutationassessor.org?cm=var&var=10,115381301,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NRAP_HUMAN&rb=593&re=731&var=S600F -NRAP 4892 hgsc.bcm.edu 36 10 115371834 115371834 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -NTRK2 4915 hgsc.bcm.edu 36 9 86475515 86475515 + missense SNP C C T novel unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C C T C C Unknown Valid Somatic missense A11V A11V L 0.695 http://mutationassessor.org?cm=var&var=9,86475515,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NTRK2_HUMAN&rb=1&re=30&var=A11V -ROR2 4920 hgsc.bcm.edu 36 9 93535351 93535351 + missense SNP C C T novel Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense A271T A271T M 1.315 http://mutationassessor.org?cm=var&var=9,93535351,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ROR2_HUMAN&rb=174&re=301&var=A271T -ROR2 4920 hgsc.bcm.edu 36 9 93535351 93535351 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense A271T A271T M 1.315 http://mutationassessor.org?cm=var&var=9,93535351,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ROR2_HUMAN&rb=174&re=301&var=A271T -ROR2 4920 hgsc.bcm.edu 36 9 93526393 93526393 + missense SNP C C T novel unknown TCGA-08-0390 TCGA-08-0390-11A-01W C C C T C C Unknown Valid Somatic missense R735Q R735Q M 1.17 http://mutationassessor.org?cm=var&var=9,93526393,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ROR2_HUMAN&rb=473&re=746&var=R735Q http://mutationassessor.org/pdb.php?prot=ROR2_HUMAN&from=473&to=746&var=R735Q -ROR2 4920 hgsc.bcm.edu 36 9 93527042 93527042 + missense SNP C C T novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense E519K E519K L 0.4 http://mutationassessor.org/?cm=msa&ty=f&p=ROR2_HUMAN&rb=473&re=746&var=E519K http://mutationassessor.org/pdb.php?prot=ROR2_HUMAN&from=473&to=746&var=E519K -ROR2 4920 hgsc.bcm.edu 36 9 93527042 93527042 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense E519K E519K L 0.4 http://mutationassessor.org/?cm=msa&ty=f&p=ROR2_HUMAN&rb=473&re=746&var=E519K http://mutationassessor.org/pdb.php?prot=ROR2_HUMAN&from=473&to=746&var=E519K -DDR2 4921 broad.mit.edu 36.1 1 161016536 161016536 + missense SNP C C T TCGA-06-0185 TCGA-06-0185-10B-01W-0254-08 C C T C C C U Valid Somatic missense P815L P815L M 1.01 http://mutationassessor.org?cm=var&var=1,161016536,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DDR2_HUMAN&rb=563&re=849&var=P815L http://mutationassessor.org/pdb.php?prot=DDR2_HUMAN&from=563&to=849&var=P815L -DDR2 4921 broad.mit.edu 36.1 1 161003642 161003642 + splice SNP G G T TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 G G G T G G U Valid Somatic splice splice splice -TNFRSF11B 4982 hgsc.bcm.edu 36 8 120014420 120014420 + missense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense R111C R111C L 0.69 http://mutationassessor.org?cm=var&var=8,120014420,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TR11B_HUMAN&rb=106&re=278&var=R111C -PAX5 5079 genome.wustl.edu 36 9 37010768 37010769 + frameshift_ins Ins - - C Unknown Unknown TCGA-06-0141 TCGA-06-0141-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_ins frameshift_ins frameshift_ins -PDGFRA 5156 hgsc.bcm.edu 36 4 54828591 54828591 + missense SNP G G C novel unknown TCGA-06-0174 TCGA-06-0174-10B-01W G G C G G G Unknown Valid Somatic missense W349C W349C H 2.465 http://mutationassessor.org?cm=var&var=4,54828591,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PGFRA_HUMAN&rb=319&re=411&var=W349C http://mutationassessor.org/pdb.php?prot=PGFRA_HUMAN&from=319&to=411&var=W349C -PDGFRA 5156 broad.mit.edu 36.1 4 54825918 54825918 + missense SNP G A G TCGA-08-0245 TCGA-08-0245-11A-01W-0318-08 G G G A G G U Valid Somatic missense C235Y C235Y M 1.775 http://mutationassessor.org?cm=var&var=4,54825918,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PGFRA_HUMAN&rb=216&re=307&var=C235Y -PDGFRA 5156 broad.mit.edu 36.1 4 54835503 54835503 + missense SNP T A A TCGA-08-0347 TCGA-08-0347-11A-01W-0318-08 T T A T T T U Valid Somatic missense V536E V536E M 1.4 http://mutationassessor.org?cm=var&var=4,54835503,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PGFRA_HUMAN&rb=401&re=600&var=V536E -PDGFRA 5156 hgsc.bcm.edu 36 4 54835503 54835503 + missense SNP T T A novel unknown TCGA-08-0347 TCGA-08-0347-11A-01W T T A T T T Unknown Valid Somatic missense V536E V536E M 1.4 http://mutationassessor.org?cm=var&var=4,54835503,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PGFRA_HUMAN&rb=401&re=600&var=V536E -PDGFRB 5159 hgsc.bcm.edu 36 5 149477555 149477555 + missense SNP G G A novel Unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense L986F L986F L 0.565 http://mutationassessor.org?cm=var&var=5,149477555,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PGFRB_HUMAN&rb=959&re=1106&var=L986F -PDGFRB 5159 hgsc.bcm.edu 36 5 149477555 149477555 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense L986F L986F L 0.565 http://mutationassessor.org?cm=var&var=5,149477555,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PGFRB_HUMAN&rb=959&re=1106&var=L986F -PDGFRB 5159 hgsc.bcm.edu 36 5 149495455 149495455 + missense SNP C C T novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense A74T A74T L 0.205 http://mutationassessor.org/?cm=msa&ty=f&p=PGFRB_HUMAN&rb=47&re=102&var=A74T -PDGFRB 5159 hgsc.bcm.edu 36 5 149495455 149495455 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense A74T A74T L 0.205 http://mutationassessor.org/?cm=msa&ty=f&p=PGFRB_HUMAN&rb=47&re=102&var=A74T -PDK2 5164 hgsc.bcm.edu 36 17 45539183 45539183 + missense SNP C C T novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C C T C C Unknown Valid Somatic missense P182S P182S L 0.385 http://mutationassessor.org?cm=var&var=17,45539183,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PDK2_HUMAN&rb=29&re=193&var=P182S http://mutationassessor.org/pdb.php?prot=PDK2_HUMAN&from=29&to=193&var=P182S -PDPK1 5170 broad.mit.edu 36.1 16 2547714 2547714 + missense SNP G A G TCGA-08-0389 TCGA-08-0389-11A-01W-0318-08 G G A G G G U Valid Somatic missense V12M V12M L 0.77 http://mutationassessor.org?cm=var&var=16,2547714,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PDPK1_HUMAN&rb=1&re=81&var=V12M -PIK3C2A 5286 broad.mit.edu 36.1 11 17083357 17083357 + missense SNP A A G TCGA-06-0209 TCGA-06-0209-10A-01W-0255-08 A A A G A A U Valid Somatic missense F1206L F1206L M 1.19 http://mutationassessor.org?cm=var&var=11,17083357,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2A_HUMAN&rb=1132&re=1347&var=F1206L http://mutationassessor.org/pdb.php?prot=P3C2A_HUMAN&from=1132&to=1347&var=F1206L -PIK3C2A 5286 hgsc.bcm.edu 36 11 17083357 17083357 + missense SNP A A G novel unknown TCGA-06-0209 TCGA-06-0209-10A-01W A A A G A A Unknown Valid Somatic missense F1206L F1206L M 1.19 http://mutationassessor.org?cm=var&var=11,17083357,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2A_HUMAN&rb=1132&re=1347&var=F1206L http://mutationassessor.org/pdb.php?prot=P3C2A_HUMAN&from=1132&to=1347&var=F1206L -PIK3C2B 5287 broad.mit.edu 36.1 1 202674772 202674772 + missense SNP C C T TCGA-02-0043 TCGA-02-0043-10A-01W-0189-08 C C C T C C U Valid Somatic missense E1144K E1144K L 0.26 http://mutationassessor.org?cm=var&var=1,202674772,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2B_HUMAN&rb=1077&re=1292&var=E1144K http://mutationassessor.org/pdb.php?prot=P3C2B_HUMAN&from=1077&to=1292&var=E1144K -PIK3C2G 5288 broad.mit.edu 36.1 12 18468201 18468201 + missense SNP G A G TCGA-06-0137 TCGA-06-0137-10A-01W-0224-08 G G A G G G U Valid Somatic missense R781H R781H H 2.26 http://mutationassessor.org?cm=var&var=12,18468201,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=646&re=828&var=R781H http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=646&to=828&var=R781H -PIK3C2G 5288 hgsc.bcm.edu 36 12 18468201 18468201 + missense SNP G G A novel unknown TCGA-06-0137 TCGA-06-0137-10A-01W G G A G G G Unknown Valid Somatic missense R781H R781H H 2.26 http://mutationassessor.org?cm=var&var=12,18468201,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=646&re=828&var=R781H http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=646&to=828&var=R781H -PIK3C2G 5288 hgsc.bcm.edu 36 12 18468201 18468201 + missense SNP G G A novel unknown TCGA-06-0137 TCGA-06-0137-10A-01W G G A G G G Unknown Valid Somatic missense R781H R781H H 2.26 http://mutationassessor.org?cm=var&var=12,18468201,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=646&re=828&var=R781H http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=646&to=828&var=R781H -PIK3C2G 5288 hgsc.bcm.edu 36 12 18468201 18468201 + missense SNP G G A novel unknown TCGA-06-0137 TCGA-06-0137-10A-01W G G A G G G Unknown Valid Somatic missense R781H R781H H 2.26 http://mutationassessor.org?cm=var&var=12,18468201,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=646&re=828&var=R781H http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=646&to=828&var=R781H -PIK3C2G 5288 broad.mit.edu 36.1 12 18549503 18549503 + missense SNP A A G TCGA-06-0145 TCGA-06-0145-10A-01W-0224-08 A A G A A A U Valid Somatic missense N1014S N1014S M 1.925 http://mutationassessor.org?cm=var&var=12,18549503,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=915&re=1130&var=N1014S http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=915&to=1130&var=N1014S -PIK3C2G 5288 hgsc.bcm.edu 36 12 18549503 18549503 + missense SNP A A G novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W A A A G A A Unknown Valid Somatic missense N1014S N1014S M 1.925 http://mutationassessor.org?cm=var&var=12,18549503,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=915&re=1130&var=N1014S http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=915&to=1130&var=N1014S -PIK3C2G 5288 broad.mit.edu 36.1 12 18326302 18326302 + missense SNP C C T TCGA-06-0213 TCGA-06-0213-10A-01W-0255-08 C C C T C C U Valid Somatic missense T7M T7M L 0.695 http://mutationassessor.org?cm=var&var=12,18326302,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=1&re=200&var=T7M -PIK3C2G 5288 hgsc.bcm.edu 36 12 18326302 18326302 + missense SNP C C T novel unknown TCGA-06-0213 TCGA-06-0213-10A-01W C C C T C C Unknown Valid Somatic missense T7M T7M L 0.695 http://mutationassessor.org?cm=var&var=12,18326302,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=1&re=200&var=T7M -PIK3C2G 5288 broad.mit.edu 36.1 12 18444021 18444021 + missense SNP T C T TCGA-06-0201 TCGA-06-0201-10A-01W-0255-08 T T C T T T U Valid Somatic missense L722S L722S L 0.28 http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=646&re=828&var=L722S http://mutationassessor.org/pdb.php?prot=P3C2G_HUMAN&from=646&to=828&var=L722S -PIK3C2G 5288 broad.mit.edu 36.1 12 18358164 18358164 + missense SNP G A G TCGA-08-0375 TCGA-08-0375-11A-01W-0318-08 G G A G G G U Valid Somatic missense D346N D346N L 0.205 http://mutationassessor.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=274&re=371&var=D346N -PIK3CA 5290 hgsc.bcm.edu 36 3 180418768 180418768 + missense SNP C C G novel unknown TCGA-08-0375 TCGA-08-0375-11A-01W C C C G C C Unknown Valid Somatic missense P539R P539R M 1.87 http://mutationassessor.org?cm=var&var=3,180418768,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=519&re=704&var=P539R http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=519&to=704&var=P539R -PIK3CA 5290 hgsc.bcm.edu 36 3 180404247 180404247 + missense SNP T T A novel unknown TCGA-02-0047 TCGA-02-0047-10A-01W T T A T T T Unknown Valid Somatic missense N345K N345K M 1.53 http://mutationassessor.org?cm=var&var=3,180404247,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=319&re=428&var=N345K http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=319&to=428&var=N345K -PIK3CA 5290 hgsc.bcm.edu 36 3 180399570 180399570 + missense SNP G G A novel unknown TCGA-02-0116 TCGA-02-0116-10A-01W G G A G G G Unknown Valid Somatic missense R88Q R88Q M 1.455 http://mutationassessor.org?cm=var&var=3,180399570,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=31&re=108&var=R88Q http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=31&to=108&var=R88Q -PIK3CA 5290 hgsc.bcm.edu 36 3 180410674 180410674 + missense SNP T T C novel unknown TCGA-02-0037 TCGA-02-0037-10A-01W T T C T T T Unknown Valid Somatic missense C420R C420R M 1.265 http://mutationassessor.org?cm=var&var=3,180410674,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=350&re=485&var=C420R http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=350&to=485&var=C420R -PIK3CA 5290 hgsc.bcm.edu 36 3 180418785 180418785 + missense SNP G G A novel unknown TCGA-06-0210 TCGA-06-0210-10A-01W G G A G G G Unknown Valid Somatic missense E545K E545K L 0.765 http://mutationassessor.org?cm=var&var=3,180418785,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=519&re=704&var=E545K http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=519&to=704&var=E545K -PIK3CA 5290 hgsc.bcm.edu 36 3 180434766 180434766 + missense SNP A A G novel Unknown TCGA-06-0171 TCGA-06-0171-10A-01W A A A G A A Unknown Valid Somatic missense M1043V M1043V L 0.65 http://mutationassessor.org?cm=var&var=3,180434766,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=M1043V http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=M1043V -PIK3CA 5290 hgsc.bcm.edu 36 3 180434766 180434766 + missense SNP A A G novel unknown TCGA-06-0171 TCGA-06-0171-10A-01W A A A G A A Unknown Valid Somatic missense M1043V M1043V L 0.65 http://mutationassessor.org?cm=var&var=3,180434766,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=M1043V http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=M1043V -PIK3CA 5290 hgsc.bcm.edu 36 3 180434785 180434785 + missense SNP G G C novel Unknown TCGA-06-0201 TCGA-06-0201-10A-01W G G C G G G Unknown Valid Somatic missense G1049A G1049A L 0.58 http://mutationassessor.org?cm=var&var=3,180434785,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=G1049A http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=G1049A -PIK3CA 5290 hgsc.bcm.edu 36 3 180434785 180434785 + missense SNP G G C novel unknown TCGA-06-0201 TCGA-06-0201-10A-01W G G C G G G Unknown Valid Somatic missense G1049A G1049A L 0.58 http://mutationassessor.org?cm=var&var=3,180434785,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=G1049A http://mutationassessor.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=G1049A -PIM1 5292 hgsc.bcm.edu 36 6 37247171 37247171 + missense SNP A A G novel Unknown TCGA-02-0011 TCGA-02-0011-10A-01W A A A G A A Unknown Valid Somatic missense N269S N269S L 0.31 http://mutationassessor.org?cm=var&var=6,37247171,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PIM1_HUMAN&rb=129&re=381&var=N269S http://mutationassessor.org/pdb.php?prot=PIM1_HUMAN&from=129&to=381&var=N269S -PIM1 5292 hgsc.bcm.edu 36 6 37247171 37247171 + missense SNP A A G novel unknown TCGA-02-0011 TCGA-02-0011-10A-01W A A A G A A Unknown Valid Somatic missense N269S N269S L 0.31 http://mutationassessor.org?cm=var&var=6,37247171,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PIM1_HUMAN&rb=129&re=381&var=N269S http://mutationassessor.org/pdb.php?prot=PIM1_HUMAN&from=129&to=381&var=N269S -PIK3CG 5294 hgsc.bcm.edu 36 7 106296896 106296896 + missense SNP C C T novel unknown TCGA-02-0116 TCGA-02-0116-10A-01W C C C T C C Unknown Valid Somatic missense R552C R552C H 2.075 http://mutationassessor.org?cm=var&var=7,106296896,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CG_HUMAN&rb=543&re=733&var=R552C http://mutationassessor.org/pdb.php?prot=PK3CG_HUMAN&from=543&to=733&var=R552C -PIK3CG 5294 hgsc.bcm.edu 36 7 106295295 106295295 + missense SNP G G A novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W G G A G G G Unknown Valid Somatic missense R18Q R18Q L 0.895 http://mutationassessor.org/?cm=msa&ty=f&p=PK3CG_HUMAN&rb=1&re=200&var=R18Q -PIK3CG 5294 hgsc.bcm.edu 36 7 106313954 106313954 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense P1004L P1004L L 0.815 http://mutationassessor.org?cm=var&var=7,106313954,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PK3CG_HUMAN&rb=827&re=1044&var=P1004L http://mutationassessor.org/pdb.php?prot=PK3CG_HUMAN&from=827&to=1044&var=P1004L -PIK3R1 5295 genome.wustl.edu 36 5 67626884 67626885 + frameshift_del Del GA GA - Unknown Unknown TCGA-06-0129 TCGA-06-0129-10A-01W GA GA Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PIK3R1 5295 genome.wustl.edu 36 5 67625310 67625312 + inframe_del Del AGA AGA - Unknown Unknown TCGA-02-0021 TCGA-02-0021-10A-01W AGA AGA Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PIK3R1 5295 genome.wustl.edu 36 5 67625370 67625372 + inframe_del Del AAG AAG - Unknown Unknown TCGA-02-0028 TCGA-02-0028-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PIK3R1 5295 genome.wustl.edu 36 5 67626840 67626857 + inframe_del Del TGACAAACGTATGAACAG TGACAAACGTATGAACAG - Unknown Unknown TCGA-06-0178 TCGA-06-0178-10B-01W TGACAAACGTATGAACAG TGACAAACGTATGAACAG Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PIK3R1 5295 genome.wustl.edu 36 5 67626889 67626891 + inframe_del Del ACG ACG - Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PIK3R1 5295 genome.wustl.edu 36 5 67626889 67626891 + inframe_del Del ACG ACG - Unknown Unknown TCGA-08-0350 TCGA-08-0350-11A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PIK3R1 5295 genome.wustl.edu 36 5 67626890 67626892 + inframe_del Del CGA CGA - Unknown Unknown TCGA-02-0114 TCGA-02-0114-10A-01W CGA CGA Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PIK3R1 5295 genome.wustl.edu 36 5 67627006 67627008 + inframe_del Del GGT GGT - Unknown Unknown TCGA-06-0133 TCGA-06-0133-10A-01W GGT GGT Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PIK3R1 5295 genome.wustl.edu 36 5 67626848 67626849 + inframe_del Ins - - GAAGAAGCAGGCAGCTGAGTATCGAGAAATTGACAAACG Unknown Unknown TCGA-02-0048 TCGA-02-0048-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic inframe_del inframe_del inframe_del -PLAG1 5324 broad.mit.edu 36.1 8 57241776 57241776 + missense SNP C C T TCGA-02-0055 TCGA-02-0055-10A-01W-0189-08 C C C T C C U Valid Somatic missense M361I M361I L 0.7 http://mutationassessor.org?cm=var&var=8,57241776,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PLAG1_HUMAN&rb=201&re=400&var=M361I -PLAG1 5324 hgsc.bcm.edu 36 8 57241776 57241776 + missense SNP C C T novel unknown TCGA-02-0055 TCGA-02-0055-10A-01W C C C T C C Unknown Valid Somatic missense M361I M361I L 0.7 http://mutationassessor.org?cm=var&var=8,57241776,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PLAG1_HUMAN&rb=201&re=400&var=M361I -PMS2 5395 hgsc.bcm.edu 36 7 6005414 6005414 + nonsense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic nonsense Q186* Q186* -POU2F1 5451 hgsc.bcm.edu 36 1 165625522 165625522 + missense SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic missense R273Q R273Q L 0.785 http://mutationassessor.org?cm=var&var=1,165625522,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PO2F1_HUMAN&rb=201&re=400&var=R273Q -PPP2R5D 5528 broad.mit.edu 36.1 6 43083723 43083723 + missense SNP G A G TCGA-02-0069 TCGA-02-0069-10A-01W-0206-08 G G G A G G U Valid Somatic missense G267S G267S M 1.91 http://mutationassessor.org?cm=var&var=6,43083723,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=2A5D_HUMAN&rb=102&re=514&var=G267S http://mutationassessor.org/pdb.php?prot=2A5D_HUMAN&from=102&to=514&var=G267S -PRKCA 5578 broad.mit.edu 36.1 17 62215542 62215542 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C T C C C U Valid Somatic missense P613S P613S M 1.405 http://mutationassessor.org?cm=var&var=17,62215542,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCA_HUMAN&rb=598&re=668&var=P613S http://mutationassessor.org/pdb.php?prot=KPCA_HUMAN&from=598&to=668&var=P613S -PRKCB1 5579 broad.mit.edu 36.1 16 24138810 24138810 + missense SNP G A G TCGA-06-0185 TCGA-06-0185-10B-01W-0254-08 G G G A G G U Valid Somatic missense D631N D631N H 2.635 http://mutationassessor.org?cm=var&var=16,24138810,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCB_HUMAN&rb=620&re=666&var=D631N http://mutationassessor.org/pdb.php?prot=KPCB_HUMAN&from=620&to=666&var=D631N -PRKCD 5580 hgsc.bcm.edu 36 3 53188716 53188716 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense R67C R67C M 1.855 http://mutationassessor.org?cm=var&var=3,53188716,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCD_HUMAN&rb=1&re=90&var=R67C http://mutationassessor.org/pdb.php?prot=KPCD_HUMAN&from=1&to=90&var=R67C -PRKCD 5580 hgsc.bcm.edu 36 3 53188716 53188716 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense R67C R67C M 1.855 http://mutationassessor.org?cm=var&var=3,53188716,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCD_HUMAN&rb=1&re=90&var=R67C http://mutationassessor.org/pdb.php?prot=KPCD_HUMAN&from=1&to=90&var=R67C -PRKCD 5580 hgsc.bcm.edu 36 3 53188716 53188716 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense R67C R67C M 1.855 http://mutationassessor.org?cm=var&var=3,53188716,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCD_HUMAN&rb=1&re=90&var=R67C http://mutationassessor.org/pdb.php?prot=KPCD_HUMAN&from=1&to=90&var=R67C -PRKCD 5580 hgsc.bcm.edu 36 3 53188716 53188716 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense R67C R67C M 1.855 http://mutationassessor.org?cm=var&var=3,53188716,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCD_HUMAN&rb=1&re=90&var=R67C http://mutationassessor.org/pdb.php?prot=KPCD_HUMAN&from=1&to=90&var=R67C -PRKCD 5580 hgsc.bcm.edu 36 3 53188716 53188716 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense R67C R67C M 1.855 http://mutationassessor.org?cm=var&var=3,53188716,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCD_HUMAN&rb=1&re=90&var=R67C http://mutationassessor.org/pdb.php?prot=KPCD_HUMAN&from=1&to=90&var=R67C -PRKCD 5580 hgsc.bcm.edu 36 3 53188716 53188716 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense R67C R67C M 1.855 http://mutationassessor.org?cm=var&var=3,53188716,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCD_HUMAN&rb=1&re=90&var=R67C http://mutationassessor.org/pdb.php?prot=KPCD_HUMAN&from=1&to=90&var=R67C -PRKCZ 5590 hgsc.bcm.edu 36 1 2072180 2072180 + missense SNP G G A novel unknown TCGA-06-0206 TCGA-06-0206-10A-01W G G A G G G Unknown Valid Somatic missense missense missense -PRKCZ 5590 hgsc.bcm.edu 36 1 2106249 2106249 + missense SNP G G A novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense missense missense -MAPK9 5601 broad.mit.edu 36.1 5 179640065 179640065 + missense SNP C C T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 C C T C C C U Valid Somatic missense G35R G35R H 3.16 http://mutationassessor.org?cm=var&var=5,179640065,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MK09_HUMAN&rb=26&re=321&var=G35R http://mutationassessor.org/pdb.php?prot=MK09_HUMAN&from=26&to=321&var=G35R -MAPK9 5601 broad.mit.edu 36.1 5 179624427 179624427 + missense SNP C C T TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 C C T C C C U Valid Somatic missense V91M V91M M 1.455 http://mutationassessor.org?cm=var&var=5,179624427,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MK09_HUMAN&rb=26&re=321&var=V91M http://mutationassessor.org/pdb.php?prot=MK09_HUMAN&from=26&to=321&var=V91M -MAPK13 5603 hgsc.bcm.edu 36 6 36212465 36212465 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense V184M V184M H 2.39 http://mutationassessor.org?cm=var&var=6,36212465,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MK13_HUMAN&rb=25&re=308&var=V184M http://mutationassessor.org/pdb.php?prot=MK13_HUMAN&from=25&to=308&var=V184M -PRNP 5621 hgsc.bcm.edu 36 20 4628251 4628251 + missense SNP A A G rs1799990 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-08-0360 TCGA-08-0360-11A-01W A A A G A A Unknown Valid Somatic missense M129V M129V M 1.655 http://mutationassessor.org?cm=var&var=20,4628251,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PRIO_HUMAN&rb=1&re=200&var=M129V http://mutationassessor.org/pdb.php?prot=PRIO_HUMAN&from=1&to=200&var=M129V -PROX1 5629 broad.mit.edu 36.1 1 212237253 212237253 + missense SNP G A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 G G G A G G U Valid Somatic missense R251H R251H L 0.985 http://mutationassessor.org?cm=var&var=1,212237253,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PROX1_HUMAN&rb=36&re=313&var=R251H -PSMD13 5719 broad.mit.edu 36.1 11 234115 234115 + missense SNP G A G rs7128044 unknown TCGA-02-0025 TCGA-02-0025-10A-01W-0318-08 A G G A G G U Valid Somatic missense C57Y C57Y N -0.16 http://mutationassessor.org/?cm=msa&ty=f&p=B3KT15_HUMAN&rb=1&re=200&var=C57Y -PSMD13 5719 broad.mit.edu 36.1 11 234115 234115 + missense SNP G A A rs7128044 unknown TCGA-08-0353 TCGA-08-0353-11A-01W-0318-08 A A G A A A U Valid Somatic missense C57Y C57Y N -0.16 http://mutationassessor.org/?cm=msa&ty=f&p=B3KT15_HUMAN&rb=1&re=200&var=C57Y -PSMD13 5719 broad.mit.edu 36.1 11 234115 234115 + missense SNP G A G rs7128044 unknown TCGA-08-0356 TCGA-08-0356-11A-01W-0318-08 nt nt G A G G U Valid Somatic missense C57Y C57Y N -0.16 http://mutationassessor.org/?cm=msa&ty=f&p=B3KT15_HUMAN&rb=1&re=200&var=C57Y -PTCH1 5727 hgsc.bcm.edu 36 9 97270875 97270875 + missense SNP G G T novel unknown TCGA-06-0151 TCGA-06-0151-10A-01W G G G T G G Unknown Valid Somatic missense F743L F743L N -0.04 http://mutationassessor.org/?cm=msa&ty=f&p=PTC1_HUMAN&rb=362&re=1180&var=F743L -PTCH1 5727 hgsc.bcm.edu 36 9 97249179 97249179 + nonsense SNP G A A novel unknown TCGA-06-0125 TCGA-06-0125-10A-01W G G A G G G Unknown Valid Somatic nonsense R1394* R1394* -PTEN 5728 broad.mit.edu 36.1 10 89682891 89682891 + missense SNP G A A TCGA-06-0187 TCGA-06-0187-10B-01W-0254-08 G G A G G G U Valid Somatic missense G132D G132D H 3.075 http://mutationassessor.org?cm=var&var=10,89682891,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=G132D http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=G132D -PTEN 5728 hgsc.bcm.edu 36 10 89682891 89682891 + missense SNP G A A novel unknown TCGA-06-0187 TCGA-06-0187-10B-01W G G A G G G Unknown Valid Somatic missense G132D G132D H 3.075 http://mutationassessor.org?cm=var&var=10,89682891,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=G132D http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=G132D -PTEN 5728 broad.mit.edu 36.1 10 89682783 89682783 + missense SNP C C T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 C C T C C C U Valid Somatic missense P96L P96L H 2.995 http://mutationassessor.org?cm=var&var=10,89682783,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=P96L http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=P96L -PTEN 5728 hgsc.bcm.edu 36 10 89682783 89682783 + missense SNP C C T novel unknown TCGA-02-0014 TCGA-02-0014-10A-01W C C C T C C Unknown Valid Somatic missense P96L P96L H 2.995 http://mutationassessor.org?cm=var&var=10,89682783,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=P96L http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=P96L -PTEN 5728 broad.mit.edu 36.1 10 89701879 89701879 + missense SNP C C T TCGA-02-0038 TCGA-02-0038-10A-01W-0189-08 C C C T C C U Valid Somatic missense R173C R173C H 2.8 http://mutationassessor.org?cm=var&var=10,89701879,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R173C http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R173C -PTEN 5728 hgsc.bcm.edu 36 10 89701879 89701879 + missense SNP C C T novel unknown TCGA-02-0038 TCGA-02-0038-10A-01W C C C T C C Unknown Valid Somatic missense R173C R173C H 2.8 http://mutationassessor.org?cm=var&var=10,89701879,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R173C http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R173C -PTEN 5728 broad.mit.edu 36.1 10 89643821 89643821 + missense SNP A A G TCGA-08-0359 TCGA-08-0359-11A-01W-0318-08 A A G A A A U Valid Somatic missense R47G R47G H 2.74 http://mutationassessor.org?cm=var&var=10,89643821,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R47G http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R47G -PTEN 5728 broad.mit.edu 36.1 10 89643821 89643821 + missense SNP A G G TCGA-08-0359 TCGA-08-0359-11A-01W-0318-08 A A G A A A U Valid Somatic missense R47G R47G H 2.74 http://mutationassessor.org?cm=var&var=10,89643821,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R47G http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R47G -PTEN 5728 hgsc.bcm.edu 36 10 89710659 89710659 + missense SNP C C T novel unknown TCGA-06-0124 TCGA-06-0124-10A-01W C C C T C C Unknown Valid Somatic missense T277I T277I H 2.085 http://mutationassessor.org?cm=var&var=10,89710659,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=T277I http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=T277I -PTEN 5728 broad.mit.edu 36.1 10 89682772 89682772 + missense SNP C A C TCGA-06-0190 TCGA-06-0190-10B-01W-0254-08 C C C A C C U Valid Somatic missense D92E D92E M 1.98 http://mutationassessor.org?cm=var&var=10,89682772,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=D92E http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=D92E -PTEN 5728 hgsc.bcm.edu 36 10 89682772 89682772 + missense SNP C C A novel unknown TCGA-06-0190 TCGA-06-0190-10B-01W C C A C C C Unknown Valid Somatic missense D92E D92E M 1.98 http://mutationassessor.org?cm=var&var=10,89682772,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=D92E http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=D92E -PTEN 5728 broad.mit.edu 36.1 10 89682972 89682972 + missense SNP G A A TCGA-06-0195 TCGA-06-0195-10A-01W-0254-08 G G G A G G U Valid Somatic missense R159K R159K M 1.945 http://mutationassessor.org?cm=var&var=10,89682972,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R159K http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R159K -PTEN 5728 broad.mit.edu 36.1 10 89682972 89682972 + missense SNP G A G TCGA-06-0195 TCGA-06-0195-10A-01W-0254-08 G G G A G G U Valid Somatic missense R159K R159K M 1.945 http://mutationassessor.org?cm=var&var=10,89682972,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R159K http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R159K -PTEN 5728 hgsc.bcm.edu 36 10 89682972 89682972 + missense SNP G G A novel unknown TCGA-06-0195 TCGA-06-0195-10A-01W G G A G G G Unknown Valid Somatic missense R159K R159K M 1.945 http://mutationassessor.org?cm=var&var=10,89682972,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R159K http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R159K -PTEN 5728 broad.mit.edu 36.1 10 89682887 89682887 + missense SNP A A G TCGA-02-0055 TCGA-02-0055-10A-01W-0189-08 A A G A A A U Valid Somatic missense T131A T131A M 1.815 http://mutationassessor.org?cm=var&var=10,89682887,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T131A http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T131A -PTEN 5728 hgsc.bcm.edu 36 10 89682887 89682887 + missense SNP A A G novel unknown TCGA-02-0055 TCGA-02-0055-10A-01W A A A G A A Unknown Valid Somatic missense T131A T131A M 1.815 http://mutationassessor.org?cm=var&var=10,89682887,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T131A http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T131A -PTEN 5728 hgsc.bcm.edu 36 10 89701862 89701862 + missense SNP C T T novel unknown TCGA-02-0021 TCGA-02-0021-10A-01W C C C G C C Unknown Valid Somatic missense T167I T167I M 1.665 http://mutationassessor.org?cm=var&var=10,89701862,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T167I http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T167I -PTEN 5728 broad.mit.edu 36.1 10 89701862 89701862 + missense SNP C C G TCGA-06-0166 TCGA-06-0166-10A-01W-0254-08 C C G C C C U Valid Somatic missense T167S T167S M 1.665 http://mutationassessor.org?cm=var&var=10,89701862,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T167S http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T167S -PTEN 5728 hgsc.bcm.edu 36 10 89701862 89701862 + missense SNP C C G novel unknown TCGA-06-0166 TCGA-06-0166-10A-01W C C C G C C Unknown Valid Somatic missense T167S T167S M 1.665 http://mutationassessor.org?cm=var&var=10,89701862,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T167S http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T167S -PTEN 5728 broad.mit.edu 36.1 10 89682975 89682975 + missense SNP C C T TCGA-02-0079 TCGA-02-0079-10A-01W-0323-08 C C C T C C U Valid Somatic missense T160I T160I M 1.6 http://mutationassessor.org?cm=var&var=10,89682975,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T160I http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T160I -PTEN 5728 hgsc.bcm.edu 36 10 89682975 89682975 + missense SNP C C T novel unknown TCGA-02-0079 TCGA-02-0079-10A-01W C C C T C C Unknown Valid Somatic missense T160I T160I M 1.6 http://mutationassessor.org?cm=var&var=10,89682975,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=T160I http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=T160I -PTEN 5728 broad.mit.edu 36.1 10 89675288 89675288 + missense SNP A A G TCGA-06-0208 TCGA-06-0208-10A-01W-0255-08 A A G A A A U Valid Somatic missense Y68C Y68C M 1.595 http://mutationassessor.org?cm=var&var=10,89675288,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=Y68C http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=Y68C -PTEN 5728 broad.mit.edu 36.1 10 89675288 89675288 + missense SNP A G G TCGA-06-0208 TCGA-06-0208-10A-01W-0255-08 A A G A A A U Valid Somatic missense Y68C Y68C M 1.595 http://mutationassessor.org?cm=var&var=10,89675288,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=Y68C http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=Y68C -PTEN 5728 hgsc.bcm.edu 36 10 89675288 89675288 + missense SNP A A G novel unknown TCGA-06-0208 TCGA-06-0208-10A-01W A A A G A A Unknown Valid Somatic missense Y68C Y68C M 1.595 http://mutationassessor.org?cm=var&var=10,89675288,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=Y68C http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=Y68C -PTEN 5728 broad.mit.edu 36.1 10 89643789 89643789 + missense SNP G A G TCGA-06-0184 TCGA-06-0184-10B-01W-0254-08 G G G A G G U Valid Somatic missense G36E G36E M 1.51 http://mutationassessor.org?cm=var&var=10,89643789,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=14&re=185&var=G36E http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=14&to=185&var=G36E -PTEN 5728 hgsc.bcm.edu 36 10 89643789 89643789 + missense SNP G G A novel unknown TCGA-06-0184 TCGA-06-0184-10B-01W G G A G G G Unknown Valid Somatic missense G36E G36E M 1.51 http://mutationassessor.org?cm=var&var=10,89643789,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=14&re=185&var=G36E http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=14&to=185&var=G36E -PTEN 5728 broad.mit.edu 36.1 10 89701940 89701940 + missense SNP T C C TCGA-02-0007 TCGA-02-0007-10A-01W-0189-08 T T C C T T U Valid Somatic missense L193P L193P M 1.415 http://mutationassessor.org?cm=var&var=10,89701940,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=L193P http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=L193P -PTEN 5728 hgsc.bcm.edu 36 10 89701940 89701940 + missense SNP T C C novel unknown TCGA-02-0007 TCGA-02-0007-10A-01W T T C C T T Unknown Valid Somatic missense L193P L193P M 1.415 http://mutationassessor.org?cm=var&var=10,89701940,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=L193P http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=L193P -PTEN 5728 hgsc.bcm.edu 36 10 89710641 89710641 + missense SNP T C C novel unknown TCGA-08-0389 TCGA-08-0389-11A-01W T T C T T T Unknown Valid Somatic missense F271S F271S M 1.315 http://mutationassessor.org?cm=var&var=10,89710641,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=F271S http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=F271S -PTEN 5728 broad.mit.edu 36.1 10 89707676 89707676 + missense SNP T C T TCGA-02-0075 TCGA-02-0075-10A-01W-0206-08 T T C T T T U Valid Somatic missense F241L F241L L 0.945 http://mutationassessor.org?cm=var&var=10,89707676,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=F241L http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=F241L -PTEN 5728 hgsc.bcm.edu 36 10 89707676 89707676 + missense SNP T T C novel unknown TCGA-02-0075 TCGA-02-0075-10A-01W T T C T T T Unknown Valid Somatic missense F241L F241L L 0.945 http://mutationassessor.org?cm=var&var=10,89707676,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=188&re=349&var=F241L http://mutationassessor.org/pdb.php?prot=PTEN_HUMAN&from=188&to=349&var=F241L -PTEN 5728 genome.wustl.edu 36 10 89680803 89680804 + frameshift_del Del AC AC - Unknown Unknown TCGA-02-0052 TCGA-02-0052-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89680805 89680806 + frameshift_del Del AC - AC Unknown Unknown TCGA-02-0052 TCGA-02-0052-10A-01W AC AC Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89682885 89682885 + frameshift_del Del G G - Unknown Unknown TCGA-02-0027 TCGA-02-0027-10A-01W G G G - G G Valid Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89682970 89682970 + frameshift_del Del A A - Unknown Unknown TCGA-02-0001 TCGA-02-0001-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89682971 89682971 + frameshift_del Del A A - Unknown Unknown TCGA-02-0001 TCGA-02-0001-10A-01W A A Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89701969 89701970 + frameshift_del Del AT AT - Unknown Unknown TCGA-06-0644 TCGA-06-0644-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89710670 89710670 + frameshift_del Del C C - Unknown Unknown TCGA-08-0348 TCGA-08-0348-11A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89710784 89710787 + frameshift_del Del ACTT - - Unknown Unknown TCGA-06-0125 TCGA-06-0125-10A-01W ACTT ACTT - - ACTT ACTT Valid Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89710784 89710787 + frameshift_del Del ACTT ACTT - Unknown Unknown TCGA-06-0206 TCGA-06-0206-10A-01W ACTT ACTT ACTT - ACTT ACTT Valid Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89710797 89710797 + frameshift_del Del A A - Unknown Unknown TCGA-06-0188 TCGA-06-0188-10B-01W A A Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89710798 89710798 + frameshift_del Del T T - Unknown Unknown TCGA-06-0188 TCGA-06-0188-10B-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89710811 89710815 + frameshift_del Del GCAAA GCAAA - Unknown Unknown TCGA-06-0168 TCGA-06-0168-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89715130 89715133 + frameshift_del Del GATA GATA - Unknown Unknown TCGA-08-0345 TCGA-08-0345-11A-03W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_del frameshift_del frameshift_del -PTEN 5728 genome.wustl.edu 36 10 89643764 89643765 + frameshift_ins Ins - - GATA Unknown Unknown TCGA-12-0618 TCGA-12-0618-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_ins frameshift_ins frameshift_ins -PTEN 5728 genome.wustl.edu 36 10 89710819 89710820 + frameshift_ins Ins - - A Unknown Unknown TCGA-12-0620 TCGA-12-0620-10A-01W Unknown Unknown Unknown Unknown Unknown Unknown Unknown Valid Somatic frameshift_ins frameshift_ins frameshift_ins -PTEN 5728 hgsc.bcm.edu 36 10 89707658 89707658 + missense SNP G G T novel Unknown TCGA-02-0113 TCGA-02-0113-10A-01W G G G T G G Unknown Valid Somatic missense E235 E235 -PTEN 5728 broad.mit.edu 36.1 10 89707742 89707742 + nonsense SNP A A T TCGA-08-0352 TCGA-08-0352-11A-02W-0323-08 A A T A A A U Valid Somatic nonsense K263* K263* -PTEN 5728 broad.mit.edu 36.1 10 89682941 89682941 + nonsense SNP C C T TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 C C C T C C U Valid Somatic nonsense Q149* Q149* -PTEN 5728 broad.mit.edu 36.1 10 89682884 89682884 + nonsense SNP C C T TCGA-06-0138 TCGA-06-0138-10C-01W-0254-08 C C C T C C U Valid Somatic nonsense R130* R130* -PTEN 5728 broad.mit.edu 36.1 10 89682884 89682884 + nonsense SNP C C T TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 C C C T C C U Valid Somatic nonsense R130* R130* -PTEN 5728 broad.mit.edu 36.1 10 89682884 89682884 + nonsense SNP C C T TCGA-08-0380 TCGA-08-0380-11A-01W-0318-08 C C T C C C U Valid Somatic nonsense R130* R130* -PTEN 5728 hgsc.bcm.edu 36 10 89682884 89682884 + nonsense SNP C C T novel unknown TCGA-06-0138 TCGA-06-0138-10C-01W C C C T C C Unknown Valid Somatic nonsense R130* R130* -PTEN 5728 hgsc.bcm.edu 36 10 89682884 89682884 + nonsense SNP C C T novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W C C C T C C Unknown Valid Somatic nonsense R130* R130* -PTEN 5728 hgsc.bcm.edu 36 10 89682884 89682884 + nonsense SNP C C T novel unknown TCGA-08-0380 TCGA-08-0380-11A-01W C C C T C C Unknown Valid Somatic nonsense R130* R130* -PTEN 5728 broad.mit.edu 36.1 10 89707652 89707652 + nonsense SNP C C T TCGA-02-0004 TCGA-02-0004-10A-01W-0318-08 C C C T C C U Valid Somatic nonsense R233* R233* -PTEN 5728 broad.mit.edu 36.1 10 89710832 89710832 + nonsense SNP C C T TCGA-06-0213 TCGA-06-0213-10A-01W-0255-08 C C T C C C U Valid Somatic nonsense R335* R335* -PTEN 5728 broad.mit.edu 36.1 10 89701893 89701893 + nonsense SNP T G T TCGA-02-0099 TCGA-02-0099-10A-01W-0206-08 T T G T T T U Valid Somatic nonsense Y177* Y177* -PTPRZ1 5803 hgsc.bcm.edu 36 7 121438125 121438125 + missense SNP C C T novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense P597S P597S L 0.695 http://mutationassessor.org?cm=var&var=7,121438125,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PTPRZ_HUMAN&rb=481&re=739&var=P597S -RAP2A 5911 hgsc.bcm.edu 36 13 96914666 96914666 + missense SNP A A G novel Unknown TCGA-02-0010 TCGA-02-0010-10A-01W A A A G A A Unknown Valid Somatic missense D174G D174G L 0.775 http://mutationassessor.org?cm=var&var=13,96914666,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RAP2A_HUMAN&rb=137&re=183&var=D174G -RB1 5925 hgsc.bcm.edu 36 13 47931845 47931845 + missense SNP C C T novel unknown TCGA-12-0619 TCGA-12-0619-10A-01W C C C T C C Unknown Valid Somatic missense R661W R661W H 2.655 http://mutationassessor.org?cm=var&var=13,47931845,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RB_HUMAN&rb=645&re=766&var=R661W http://mutationassessor.org/pdb.php?prot=RB_HUMAN&from=645&to=766&var=R661W -RB1 5925 broad.mit.edu 36.1 13 47931840 47931840 + missense SNP A A T TCGA-06-0184 TCGA-06-0184-10B-01W-0254-08 A A T A A A U Valid Somatic missense Y659F Y659F M 1.04 http://mutationassessor.org?cm=var&var=13,47931840,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RB_HUMAN&rb=645&re=766&var=Y659F http://mutationassessor.org/pdb.php?prot=RB_HUMAN&from=645&to=766&var=Y659F -RB1 5925 hgsc.bcm.edu 36 13 47931840 47931840 + missense SNP A A T novel unknown TCGA-06-0184 TCGA-06-0184-10B-01W A A A T A A Unknown Valid Somatic missense Y659F Y659F M 1.04 http://mutationassessor.org?cm=var&var=13,47931840,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RB_HUMAN&rb=645&re=766&var=Y659F http://mutationassessor.org/pdb.php?prot=RB_HUMAN&from=645&to=766&var=Y659F -RB1 5925 hgsc.bcm.edu 36 13 47928486 47928486 + missense SNP G G C novel unknown TCGA-06-0213 TCGA-06-0213-10A-01W G G C G G G Unknown Valid Somatic missense V654L V654L L 0.555 http://mutationassessor.org?cm=var&var=13,47928486,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RB_HUMAN&rb=645&re=766&var=V654L http://mutationassessor.org/pdb.php?prot=RB_HUMAN&from=645&to=766&var=V654L -RB1 5925 hgsc.bcm.edu 36 13 47779430 47779430 + nonsense SNP G T T novel unknown TCGA-08-0389 TCGA-08-0389-11A-01W G G G T G G Unknown Valid Somatic nonsense E51* E51* -RB1 5925 broad.mit.edu 36.1 13 47845597 47845597 + nonsense SNP C C T TCGA-06-0195 TCGA-06-0195-10A-01W-0254-08 C C T C C C U Valid Somatic nonsense Q395* Q395* -RB1 5925 hgsc.bcm.edu 36 13 47845597 47845597 + nonsense SNP C C T novel unknown TCGA-06-0195 TCGA-06-0195-10A-01W C C C T C C Unknown Valid Somatic nonsense Q395* Q395* -RB1 5925 hgsc.bcm.edu 36 13 47931968 47931968 + nonsense SNP C C T novel unknown TCGA-02-0033 TCGA-02-0033-10A-01W C C C T C C Unknown Valid Somatic nonsense Q702* Q702* -RB1 5925 broad.mit.edu 36.1 13 47834984 47834984 + nonsense SNP C C T TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 C C C T C C U Valid Somatic nonsense R251* R251* -RB1 5925 hgsc.bcm.edu 36 13 47834984 47834984 + nonsense SNP C C T novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W C C C T C C Unknown Valid Somatic nonsense R251* R251* -RB1 5925 hgsc.bcm.edu 36 13 47849111 47849111 + nonsense SNP C C A novel unknown TCGA-02-0079 TCGA-02-0079-10A-01W C C A C C C Unknown Valid Somatic nonsense Y424* Y424* -RB1 5925 broad.mit.edu 36.1 13 47937375 47937375 + nonsense SNP C T T TCGA-02-0007 TCGA-02-0007-10A-01W-0189-08 C C T T C C U Valid Somatic nonsense nonsense nonsense -RB1 5925 broad.mit.edu 36.1 13 47925250 47925250 + splice SNP T C T TCGA-02-0052 TCGA-02-0052-10A-01W-0189-08 T T T C T T U Valid Somatic splice splice splice -RB1 5925 broad.mit.edu 36.1 13 47931824 47931824 + splice SNP G G T TCGA-06-0184 TCGA-06-0184-10B-01W-0254-08 G G G T G G U Valid Somatic splice splice splice -RB1 5925 broad.mit.edu 36.1 13 47945496 47945496 + splice SNP G C G TCGA-06-0206 TCGA-06-0206-10A-01W-0255-08 G G C G G G U Valid Somatic splice splice splice -RB1 5925 hgsc.bcm.edu 36 13 47925250 47925250 + splice SNP T T C novel unknown TCGA-02-0052 TCGA-02-0052-10A-01W T T C T T T Unknown Valid Somatic splice splice splice -RB1 5925 hgsc.bcm.edu 36 13 47931824 47931824 + splice SNP G G T novel unknown TCGA-06-0184 TCGA-06-0184-10B-01W G G G T G G Unknown Valid Somatic splice splice splice -RB1 5925 hgsc.bcm.edu 36 13 47945496 47945496 + splice SNP G G C novel unknown TCGA-06-0206 TCGA-06-0206-10A-01W G G C G G G Unknown Valid Somatic splice splice splice -RNASE4 6038 hgsc.bcm.edu 36 14 20237510 20237510 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense G47D G47D M 1.08 http://mutationassessor.org?cm=var&var=14,20237510,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RNAS4_HUMAN&rb=30&re=147&var=G47D http://mutationassessor.org/pdb.php?prot=RNAS4_HUMAN&from=30&to=147&var=G47D -ROS1 6098 broad.mit.edu 36.1 6 117769074 117769074 + missense SNP C C T TCGA-02-0089 TCGA-02-0089-10A-01W-0206-08 C C T C C C U Valid Somatic missense V1666I V1666I L 0.205 http://mutationassessor.org/?cm=msa&ty=f&p=ROS_HUMAN&rb=1659&re=1741&var=V1666I -ROS1 6098 broad.mit.edu 36.1 6 117790458 117790458 + splice SNP C C T TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 C C T C C C U Valid Somatic splice splice splice -RPS6KA3 6197 hgsc.bcm.edu 36 X 20103288 20103288 + missense SNP A T T novel unknown TCGA-06-0157 TCGA-06-0157-10A-01W A A A T A A Unknown Valid Somatic missense L381H L381H M 1.425 http://mutationassessor.org?cm=var&var=X,20103288,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KS6A3_HUMAN&rb=350&re=389&var=L381H -RTN1 6252 broad.mit.edu 36.1 14 59263887 59263887 + missense SNP G A G TCGA-02-0021 TCGA-02-0021-10A-01W-0189-08 G G G A G G U Valid Somatic missense A423V A423V M 1.01 http://mutationassessor.org?cm=var&var=14,59263887,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RTN1_HUMAN&rb=271&re=579&var=A423V -RYR3 6263 broad.mit.edu 36.1 15 31710758 31710758 + missense SNP G A G TCGA-06-0126 TCGA-06-0126-10A-01W-0224-08 G G G A G G U Valid Somatic missense D947N D947N N -0.41 http://mutationassessor.org/?cm=msa&ty=f&p=RYR3_HUMAN&rb=913&re=991&var=D947N -SFRP1 6422 hgsc.bcm.edu 36 8 41285417 41285417 + missense SNP C C T novel Unknown TCGA-02-0047 TCGA-02-0047-10A-01W C C C T C C Unknown Valid Somatic missense C140Y C140Y H 3.37 http://mutationassessor.org?cm=var&var=8,41285417,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SFRP1_HUMAN&rb=58&re=167&var=C140Y http://mutationassessor.org/pdb.php?prot=SFRP1_HUMAN&from=58&to=167&var=C140Y -SHH 6469 hgsc.bcm.edu 36 7 155289053 155289053 + missense SNP C C T novel unknown TCGA-08-0390 TCGA-08-0390-11A-01W C C C T C C Unknown Valid Somatic missense G231S G231S H 2.6 http://mutationassessor.org?cm=var&var=7,155289053,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SHH_HUMAN&rb=187&re=448&var=G231S http://mutationassessor.org/pdb.php?prot=SHH_HUMAN&from=187&to=448&var=G231S -SHH 6469 hgsc.bcm.edu 36 7 155288984 155288984 + missense SNP C C T novel unknown TCGA-06-0124 TCGA-06-0124-10A-01W C C C T C C Unknown Valid Somatic missense V254M V254M M 1.195 http://mutationassessor.org?cm=var&var=7,155288984,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SHH_HUMAN&rb=187&re=448&var=V254M http://mutationassessor.org/pdb.php?prot=SHH_HUMAN&from=187&to=448&var=V254M -ST6GAL1 6480 hgsc.bcm.edu 36 3 188274654 188274654 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense P273L P273L L 0.655 http://mutationassessor.org?cm=var&var=3,188274654,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SIAT1_HUMAN&rb=136&re=392&var=P273L -ST6GAL1 6480 hgsc.bcm.edu 36 3 188274654 188274654 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense P273L P273L L 0.655 http://mutationassessor.org?cm=var&var=3,188274654,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SIAT1_HUMAN&rb=136&re=392&var=P273L -ST6GAL1 6480 hgsc.bcm.edu 36 3 188274654 188274654 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense P273L P273L L 0.655 http://mutationassessor.org?cm=var&var=3,188274654,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SIAT1_HUMAN&rb=136&re=392&var=P273L -ST6GAL1 6480 hgsc.bcm.edu 36 3 188274654 188274654 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense P273L P273L L 0.655 http://mutationassessor.org?cm=var&var=3,188274654,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SIAT1_HUMAN&rb=136&re=392&var=P273L -ST6GAL1 6480 hgsc.bcm.edu 36 3 188274654 188274654 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense P273L P273L L 0.655 http://mutationassessor.org?cm=var&var=3,188274654,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SIAT1_HUMAN&rb=136&re=392&var=P273L -ST6GAL1 6480 hgsc.bcm.edu 36 3 188274654 188274654 + missense SNP C C T novel unknown TCGA-06-0145 TCGA-06-0145-10A-01W C C C T C C Unknown Valid Somatic missense P273L P273L L 0.655 http://mutationassessor.org?cm=var&var=3,188274654,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SIAT1_HUMAN&rb=136&re=392&var=P273L -SLC2A2 6514 broad.mit.edu 36.1 3 172205794 172205794 + missense SNP C C T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 C C C T C C U Valid Somatic missense A313T A313T L 0.85 http://mutationassessor.org?cm=var&var=3,172205794,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GTR2_HUMAN&rb=13&re=499&var=A313T -SLC16A1 6566 hgsc.bcm.edu 36 1 113266204 113266204 + missense SNP A A T novel unknown TCGA-08-0385 TCGA-08-0385-11A-01W A A A T A A Unknown Valid Somatic missense C98S C98S L 0.38 http://mutationassessor.org/?cm=msa&ty=f&p=MOT1_HUMAN&rb=22&re=406&var=C98S -SOX11 6664 broad.mit.edu 36.1 2 5751587 5751587 + missense SNP A A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 A A G A A A U Valid Somatic missense D428G D428G M 1.585 http://mutationassessor.org?cm=var&var=2,5751587,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SOX11_HUMAN&rb=351&re=440&var=D428G -SOX11 6664 broad.mit.edu 36.1 2 5751538 5751538 + nonsense SNP G T T TCGA-06-0173 TCGA-06-0173-10B-01W-0254-08 nt nt G T G G U Valid Somatic nonsense E412* E412* -SPARC 6678 broad.mit.edu 36.1 5 151029489 151029489 + missense SNP G A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 G G G A G G U Valid Somatic missense A127V A127V M 1.82 http://mutationassessor.org?cm=var&var=5,151029489,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SPRC_HUMAN&rb=95&re=149&var=A127V http://mutationassessor.org/pdb.php?prot=SPRC_HUMAN&from=95&to=149&var=A127V -SPN 6693 broad.mit.edu 36.1 16 29582896 29582896 + missense SNP C A C TCGA-08-0354 TCGA-08-0354-11A-01W-0318-08 C C C A C C U Valid Somatic missense P116T P116T L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=LEUK_HUMAN&rb=1&re=200&var=P116T -STAT1 6772 hgsc.bcm.edu 36 2 191571219 191571219 + missense SNP T T A novel unknown TCGA-06-0185 TCGA-06-0185-10B-01W T T A T T T Unknown Valid Somatic missense K201M K201M L 0.83 http://mutationassessor.org?cm=var&var=2,191571219,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=STAT1_HUMAN&rb=136&re=315&var=K201M http://mutationassessor.org/pdb.php?prot=STAT1_HUMAN&from=136&to=315&var=K201M -CDKL5 6792 broad.mit.edu 36.1 X 18574049 18574049 + splice SNP C C T TCGA-06-0137 TCGA-06-0137-10A-01W-0224-08 C C T C C C U Valid Somatic splice splice splice -SYP 6855 broad.mit.edu 36.1 X 48935116 48935116 + missense SNP C C T TCGA-06-0157 TCGA-06-0157-10A-01W-0254-08 C C C T C C U Valid Somatic missense V222M V222M M 1.255 http://mutationassessor.org?cm=var&var=X,48935116,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SYPH_HUMAN&rb=21&re=227&var=V222M -SYP 6855 broad.mit.edu 36.1 X 48935116 48935116 + missense SNP C T T TCGA-06-0157 TCGA-06-0157-10A-01W-0254-08 C C C T C C U Valid Somatic missense V222M V222M M 1.255 http://mutationassessor.org?cm=var&var=X,48935116,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SYPH_HUMAN&rb=21&re=227&var=V222M -TAF1 6872 hgsc.bcm.edu 36 X 70504111 70504111 + missense SNP G G A novel unknown TCGA-06-0213 TCGA-06-0213-10A-01W G G A G G G Unknown Valid Somatic missense G73E G73E M 1.57 http://mutationassessor.org?cm=var&var=X,70504111,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TAF1_HUMAN&rb=22&re=87&var=G73E -TAF1 6872 hgsc.bcm.edu 36 X 70591395 70591395 + missense SNP G G C novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W G G C G G G Unknown Valid Somatic missense S1633T S1633T L 0.545 http://mutationassessor.org?cm=var&var=X,70591395,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TAF1_HUMAN&rb=1425&re=1872&var=S1633T -TCF12 6938 hgsc.bcm.edu 36 15 55330914 55330914 + splice SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic splice splice splice -TCF12 6938 hgsc.bcm.edu 36 15 55342601 55342601 + splice SNP G G C novel unknown TCGA-06-0128 TCGA-06-0128-10A-01W G G C G G G Unknown Valid Somatic splice splice splice -TEK 7010 hgsc.bcm.edu 36 9 27219172 27219172 + missense SNP C C T novel unknown TCGA-06-0184 TCGA-06-0184-10B-01W C C C T C C Unknown Valid Somatic missense T1106M T1106M L 0.95 http://mutationassessor.org/?cm=msa&ty=f&p=TIE2_HUMAN&rb=1001&re=1124&var=T1106M http://mutationassessor.org/pdb.php?prot=TIE2_HUMAN&from=1001&to=1124&var=T1106M -TEK 7010 hgsc.bcm.edu 36 9 27173463 27173463 + missense SNP A A C rs682632 byCluster;byFrequency;byHapMap TCGA-06-0178 TCGA-06-0178-10B-01W C C A C C C Unknown Valid Somatic missense Q346P Q346P N -0.675 http://mutationassessor.org/?cm=msa&ty=f&p=TIE2_HUMAN&rb=319&re=444&var=Q346P http://mutationassessor.org/pdb.php?prot=TIE2_HUMAN&from=319&to=444&var=Q346P -TEK 7010 hgsc.bcm.edu 36 9 27148007 27148007 + missense SNP T T A novel unknown TCGA-06-0126 TCGA-06-0126-10A-01W T T A T T T Unknown Valid Somatic missense missense missense -TEK 7010 hgsc.bcm.edu 36 9 27147923 27147923 + nonsense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic nonsense W49* W49* -TFAP2C 7022 hgsc.bcm.edu 36 20 54645203 54645203 + missense SNP G A A novel Unknown TCGA-06-0122 TCGA-06-0122-10A-01W G G A A G G Unknown Valid Somatic missense M351I M351I M 1.43 http://mutationassessor.org?cm=var&var=20,54645203,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AP2C_HUMAN&rb=220&re=428&var=M351I -TGFBR2 7048 broad.mit.edu 36.1 3 30666785 30666785 + missense SNP A A T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 A A A T A A U Valid Somatic missense I95L I95L L 0.63 http://mutationassessor.org?cm=var&var=3,30666785,A,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TGFR2_HUMAN&rb=47&re=165&var=I95L http://mutationassessor.org/pdb.php?prot=TGFR2_HUMAN&from=47&to=165&var=I95L -THBS1 7057 hgsc.bcm.edu 36 15 37662069 37662069 + missense SNP G G A novel unknown TCGA-02-0007 TCGA-02-0007-10A-01W G G A G G G Unknown Valid Somatic missense G151S G151S M 1.15 http://mutationassessor.org?cm=var&var=15,37662069,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TSP1_HUMAN&rb=24&re=221&var=G151S http://mutationassessor.org/pdb.php?prot=TSP1_HUMAN&from=24&to=221&var=G151S -THBS1 7057 hgsc.bcm.edu 36 15 37663495 37663495 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense L240F L240F L 0.52 http://mutationassessor.org/?cm=msa&ty=f&p=TSP1_HUMAN&rb=201&re=317&var=L240F -TIMP2 7077 hgsc.bcm.edu 36 17 74363373 74363373 + nonsense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic nonsense Q212* Q212* -TP53 7157 broad.mit.edu 36.1 17 7519128 7519128 + missense SNP C T T TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 C C T T C C U Valid Somatic missense C176Y C176Y H 2.765 http://mutationassessor.org?cm=var&var=17,7519128,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C176Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C176Y -TP53 7157 hgsc.bcm.edu 36 17 7519128 7519128 + missense SNP C T T novel Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense C176Y C176Y H 2.765 http://mutationassessor.org?cm=var&var=17,7519128,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C176Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C176Y -TP53 7157 hgsc.bcm.edu 36 17 7519128 7519128 + missense SNP C T T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense C176Y C176Y H 2.765 http://mutationassessor.org?cm=var&var=17,7519128,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C176Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C176Y -TP53 7157 broad.mit.edu 36.1 17 7519120 7519120 + missense SNP G A G TCGA-02-0089 TCGA-02-0089-10A-01W-0206-08 G G A G G G U Valid Somatic missense H179Y H179Y H 2.725 http://mutationassessor.org?cm=var&var=17,7519120,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H179Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H179Y -TP53 7157 broad.mit.edu 36.1 17 7519132 7519132 + missense SNP G C C TCGA-02-0011 TCGA-02-0011-10A-01W-0189-08 G G G C G G U Valid Somatic missense R175G R175G H 2.695 http://mutationassessor.org?cm=var&var=17,7519132,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175G http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175G -TP53 7157 hgsc.bcm.edu 36 17 7519132 7519132 + missense SNP G C C novel Unknown TCGA-02-0011 TCGA-02-0011-10A-01W G G C G G G Unknown Valid Somatic missense R175G R175G H 2.695 http://mutationassessor.org?cm=var&var=17,7519132,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175G http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175G -TP53 7157 hgsc.bcm.edu 36 17 7519132 7519132 + missense SNP G C C novel unknown TCGA-02-0011 TCGA-02-0011-10A-01W G G C G G G Unknown Valid Somatic missense R175G R175G H 2.695 http://mutationassessor.org?cm=var&var=17,7519132,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175G http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175G -TP53 7157 broad.mit.edu 36.1 17 7519131 7519131 + missense SNP C C T rs28934578 unknown TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C T C C C U Valid Somatic missense R175H R175H H 2.695 http://mutationassessor.org?cm=var&var=17,7519131,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175H -TP53 7157 broad.mit.edu 36.1 17 7519131 7519131 + missense SNP C C T rs28934578 unknown TCGA-02-0037 TCGA-02-0037-10A-01W-0189-08 C C T C C C U Valid Somatic missense R175H R175H H 2.695 http://mutationassessor.org?cm=var&var=17,7519131,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175H -TP53 7157 hgsc.bcm.edu 36 17 7519131 7519131 + missense SNP C C T rs28934578 unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense R175H R175H H 2.695 http://mutationassessor.org?cm=var&var=17,7519131,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175H -TP53 7157 hgsc.bcm.edu 36 17 7519131 7519131 + missense SNP C C T rs28934578 unknown TCGA-02-0037 TCGA-02-0037-10A-01W C C C T C C Unknown Valid Somatic missense R175H R175H H 2.695 http://mutationassessor.org?cm=var&var=17,7519131,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175H -TP53 7157 broad.mit.edu 36.1 17 7519182 7519182 + missense SNP C C T TCGA-06-0184 TCGA-06-0184-10B-01W-0254-08 C C T C C C U Valid Somatic missense R158H R158H H 2.675 http://mutationassessor.org?cm=var&var=17,7519182,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R158H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R158H -TP53 7157 hgsc.bcm.edu 36 17 7519182 7519182 + missense SNP C C T novel unknown TCGA-06-0130 TCGA-06-0130-10A-01W C C C T C C Unknown Valid Somatic missense R158H R158H H 2.675 http://mutationassessor.org?cm=var&var=17,7519182,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R158H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R158H -TP53 7157 hgsc.bcm.edu 36 17 7519182 7519182 + missense SNP C C T novel unknown TCGA-06-0184 TCGA-06-0184-10B-01W C C C T C C Unknown Valid Somatic missense R158H R158H H 2.675 http://mutationassessor.org?cm=var&var=17,7519182,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R158H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R158H -TP53 7157 broad.mit.edu 36.1 17 7519137 7519137 + missense SNP A A C TCGA-02-0048 TCGA-02-0048-10A-01W-0318-08 A A C A A A U Valid Somatic missense V173G V173G H 2.62 http://mutationassessor.org?cm=var&var=17,7519137,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V173G http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V173G -TP53 7157 hgsc.bcm.edu 36 17 7519137 7519137 + missense SNP A A C novel unknown TCGA-02-0048 TCGA-02-0048-10A-01W A A A C A A Unknown Valid Somatic missense V173G V173G H 2.62 http://mutationassessor.org?cm=var&var=17,7519137,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V173G http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V173G -TP53 7157 broad.mit.edu 36.1 17 7517821 7517821 + missense SNP T G T TCGA-06-0195 TCGA-06-0195-10A-01W-0254-08 T T G T T T U Valid Somatic missense D281A D281A H 2.61 http://mutationassessor.org?cm=var&var=17,7517821,T,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=D281A http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=D281A -TP53 7157 hgsc.bcm.edu 36 17 7517821 7517821 + missense SNP T T G novel unknown TCGA-06-0195 TCGA-06-0195-10A-01W T T G T T T Unknown Valid Somatic missense D281A D281A H 2.61 http://mutationassessor.org?cm=var&var=17,7517821,T,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=D281A http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=D281A -TP53 7157 broad.mit.edu 36.1 17 7517867 7517867 + missense SNP C C T TCGA-06-0195 TCGA-06-0195-10A-01W-0254-08 C C T C C C U Valid Somatic missense G266R G266R H 2.585 http://mutationassessor.org?cm=var&var=17,7517867,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G266R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G266R -TP53 7157 broad.mit.edu 36.1 17 7518928 7518928 + missense SNP C C T TCGA-02-0055 TCGA-02-0055-10A-01W-0189-08 C C C T C C U Valid Somatic missense V216M V216M H 2.585 http://mutationassessor.org?cm=var&var=17,7518928,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V216M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V216M -TP53 7157 broad.mit.edu 36.1 17 7518928 7518928 + missense SNP C C T TCGA-08-0359 TCGA-08-0359-11A-01W-0318-08 C C C T C C U Valid Somatic missense V216M V216M H 2.585 http://mutationassessor.org?cm=var&var=17,7518928,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V216M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V216M -TP53 7157 hgsc.bcm.edu 36 17 7518928 7518928 + missense SNP C C T novel unknown TCGA-02-0055 TCGA-02-0055-10A-01W C C C T C C Unknown Valid Somatic missense V216M V216M H 2.585 http://mutationassessor.org?cm=var&var=17,7518928,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V216M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V216M -TP53 7157 hgsc.bcm.edu 36 17 7518928 7518928 + missense SNP C C T novel Unknown TCGA-08-0359 TCGA-08-0359-11A-01W C C C T C C Unknown Valid Somatic missense V216M V216M H 2.585 http://mutationassessor.org?cm=var&var=17,7518928,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V216M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V216M -TP53 7157 genome.wustl.edu 36 17 7517831 7517831 + missense SNP G A G Unknown Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G G A G G Valid Valid Somatic missense P278S P278S H 2.55 http://mutationassessor.org?cm=var&var=17,7517831,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=P278S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=P278S -TP53 7157 hgsc.bcm.edu 36 17 7517830 7517830 + missense SNP G G C novel unknown TCGA-02-0001 TCGA-02-0001-10A-01W G G C G G G Unknown Valid Somatic missense P278R P278R H 2.55 http://mutationassessor.org?cm=var&var=17,7517830,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=P278R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=P278R -TP53 7157 hgsc.bcm.edu 36 17 7517831 7517831 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense P278S P278S H 2.55 http://mutationassessor.org?cm=var&var=17,7517831,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=P278S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=P278S -TP53 7157 broad.mit.edu 36.1 17 7519267 7519267 + missense SNP G A G TCGA-02-0075 TCGA-02-0075-10A-01W-0206-08 G G G A G G U Valid Somatic missense L130F L130F H 2.45 http://mutationassessor.org?cm=var&var=17,7519267,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=L130F http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=L130F -TP53 7157 hgsc.bcm.edu 36 17 7519267 7519267 + missense SNP G G A novel unknown TCGA-02-0075 TCGA-02-0075-10A-01W G G A G G G Unknown Valid Somatic missense L130F L130F H 2.45 http://mutationassessor.org?cm=var&var=17,7519267,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=L130F http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=L130F -TP53 7157 hgsc.bcm.edu 36 17 7519266 7519266 + missense SNP A A C novel unknown TCGA-08-0389 TCGA-08-0389-11A-01W A A A C A A Unknown Valid Somatic missense L130R L130R H 2.45 http://mutationassessor.org?cm=var&var=17,7519266,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=L130R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=L130R -TP53 7157 broad.mit.edu 36.1 17 7518272 7518272 + missense SNP C C G TCGA-06-0150 TCGA-06-0150-10A-01W-0254-08 C C G C C C U Valid Somatic missense G245A G245A H 2.385 http://mutationassessor.org?cm=var&var=17,7518272,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245A http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245A -TP53 7157 hgsc.bcm.edu 36 17 7520098 7520098 + missense SNP C C G novel unknown TCGA-02-0025 TCGA-02-0025-10A-01W C C C G C C Unknown Valid Somatic missense G105A G105A H 2.345 http://mutationassessor.org?cm=var&var=17,7520098,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G105A http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G105A -TP53 7157 hgsc.bcm.edu 36 17 7520099 7520099 + missense SNP C C A novel unknown TCGA-08-0353 TCGA-08-0353-11A-01W C C A C C C Unknown Valid Somatic missense G105C G105C H 2.345 http://mutationassessor.org?cm=var&var=17,7520099,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G105C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G105C -TP53 7157 broad.mit.edu 36.1 17 7517846 7517846 + missense SNP G A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 G G G A G G U Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 broad.mit.edu 36.1 17 7517846 7517846 + missense SNP G A A TCGA-02-0080 TCGA-02-0080-10A-01W-0206-08 G G A A G G U Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 broad.mit.edu 36.1 17 7517846 7517846 + missense SNP G A G TCGA-02-0084 TCGA-02-0084-10A-01W-0323-08 nt nt A G G G U Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 broad.mit.edu 36.1 17 7517846 7517846 + missense SNP G A G TCGA-08-0373 TCGA-08-0373-11A-01W-0323-08 G G A G G G U Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 hgsc.bcm.edu 36 17 7517846 7517846 + missense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 hgsc.bcm.edu 36 17 7517846 7517846 + missense SNP G A A novel unknown TCGA-02-0080 TCGA-02-0080-10A-01W G G A G G G Unknown Valid Somatic missense R273C R273C H 2.325 http://mutationassessor.org?cm=var&var=17,7517846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273C -TP53 7157 hgsc.bcm.edu 36 17 7517845 7517845 + missense SNP C C T rs28934576 unknown TCGA-06-0206 TCGA-06-0206-10A-01W C C C T C C Unknown Valid Somatic missense R273H R273H H 2.325 http://mutationassessor.org?cm=var&var=17,7517845,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273H http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273H -TP53 7157 hgsc.bcm.edu 36 17 7518263 7518263 + missense SNP C C T rs11540652 byHapMap TCGA-02-0033 TCGA-02-0033-10A-01W C C C T C C Unknown Valid Somatic missense R248Q R248Q H 2.31 http://mutationassessor.org?cm=var&var=17,7518263,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R248Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R248Q -TP53 7157 hgsc.bcm.edu 36 17 7518263 7518263 + missense SNP C C T rs11540652 byHapMap TCGA-06-0241 TCGA-06-0241-10A-01W C C C T C C Unknown Valid Somatic missense R248Q R248Q H 2.31 http://mutationassessor.org?cm=var&var=17,7518263,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R248Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R248Q -TP53 7157 broad.mit.edu 36.1 17 7519126 7519126 + missense SNP G A G TCGA-02-0046 TCGA-02-0046-10A-01W-0189-08 G G A G G G U Valid Somatic missense P177S P177S H 2.29 http://mutationassessor.org?cm=var&var=17,7519126,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=P177S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=P177S -TP53 7157 hgsc.bcm.edu 36 17 7519126 7519126 + missense SNP G G A novel unknown TCGA-02-0046 TCGA-02-0046-10A-01W G G A G G G Unknown Valid Somatic missense P177S P177S H 2.29 http://mutationassessor.org?cm=var&var=17,7519126,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=P177S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=P177S -TP53 7157 hgsc.bcm.edu 36 17 7518234 7518234 + missense SNP C C G novel unknown TCGA-02-0034 TCGA-02-0034-10A-01W C C C G C C Unknown Valid Somatic missense E258Q E258Q H 2.24 http://mutationassessor.org?cm=var&var=17,7518234,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E258Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E258Q -TP53 7157 broad.mit.edu 36.1 17 7518997 7518997 + missense SNP G A A TCGA-08-0245 TCGA-08-0245-11A-01W-0318-08 G G A G G G U Valid Somatic missense H193Y H193Y H 2.2 http://mutationassessor.org?cm=var&var=17,7518997,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H193Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H193Y -TP53 7157 hgsc.bcm.edu 36 17 7518997 7518997 + missense SNP G A A novel Unknown TCGA-08-0245 TCGA-08-0245-11A-01W G G A G G G Unknown Valid Somatic missense H193Y H193Y H 2.2 http://mutationassessor.org?cm=var&var=17,7518997,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H193Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H193Y -TP53 7157 hgsc.bcm.edu 36 17 7518997 7518997 + missense SNP G A A novel unknown TCGA-08-0245 TCGA-08-0245-11A-01W G G A G G G Unknown Valid Somatic missense H193Y H193Y H 2.2 http://mutationassessor.org?cm=var&var=17,7518997,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H193Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H193Y -TP53 7157 broad.mit.edu 36.1 17 7517849 7517849 + missense SNP C C T TCGA-02-0058 TCGA-02-0058-10A-01W-0189-08 C C T C C C U Valid Somatic missense V272M V272M H 2.195 http://mutationassessor.org?cm=var&var=17,7517849,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V272M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V272M -TP53 7157 hgsc.bcm.edu 36 17 7517849 7517849 + missense SNP C C T novel unknown TCGA-02-0058 TCGA-02-0058-10A-01W C C C T C C Unknown Valid Somatic missense V272M V272M H 2.195 http://mutationassessor.org?cm=var&var=17,7517849,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V272M http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V272M -TP53 7157 broad.mit.edu 36.1 17 7518275 7518275 + missense SNP C C T rs28934572 unknown TCGA-02-0026 TCGA-02-0026-10A-01W-0318-08 C C T C C C U Valid Somatic missense G244D G244D H 2.1 http://mutationassessor.org?cm=var&var=17,7518275,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G244D http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G244D -TP53 7157 broad.mit.edu 36.1 17 7518990 7518990 + missense SNP A A G TCGA-06-0237 TCGA-06-0237-10A-01W-0255-08 A A G A A A U Valid Somatic missense I195T I195T H 2.08 http://mutationassessor.org?cm=var&var=17,7518990,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=I195T http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=I195T -TP53 7157 hgsc.bcm.edu 36 17 7518990 7518990 + missense SNP A A G novel unknown TCGA-06-0237 TCGA-06-0237-10A-01W A A A G A A Unknown Valid Somatic missense I195T I195T H 2.08 http://mutationassessor.org?cm=var&var=17,7518990,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=I195T http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=I195T -TP53 7157 broad.mit.edu 36.1 17 7518915 7518915 + missense SNP T C T TCGA-06-0644 TCGA-06-0644-10A-01W-0323-08 T T C T T T U Valid Somatic missense Y220C Y220C H 2.06 http://mutationassessor.org?cm=var&var=17,7518915,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=Y220C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=Y220C -TP53 7157 broad.mit.edu 36.1 17 7518915 7518915 + missense SNP T C T TCGA-08-0351 TCGA-08-0351-11A-01W-0318-08 nt nt C T T T U Valid Somatic missense Y220C Y220C H 2.06 http://mutationassessor.org?cm=var&var=17,7518915,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=Y220C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=Y220C -TP53 7157 hgsc.bcm.edu 36 17 7518915 7518915 + missense SNP T T C novel unknown TCGA-08-0351 TCGA-08-0351-11A-01W T T C T T T Unknown Valid Somatic missense Y220C Y220C H 2.06 http://mutationassessor.org?cm=var&var=17,7518915,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=Y220C http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=Y220C -TP53 7157 hgsc.bcm.edu 36 17 7519251 7519251 + missense SNP C C T novel unknown TCGA-02-0034 TCGA-02-0034-10A-01W C C C T C C Unknown Valid Somatic missense C135Y C135Y H 2.01 http://mutationassessor.org?cm=var&var=17,7519251,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C135Y http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C135Y -TP53 7157 broad.mit.edu 36.1 17 7517819 7517819 + missense SNP G A G rs28934574 unknown TCGA-02-0003 TCGA-02-0003-10A-01W-0189-08 G G A G G G U Valid Somatic missense R282W R282W M 1.945 http://mutationassessor.org?cm=var&var=17,7517819,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R282W http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R282W -TP53 7157 broad.mit.edu 36.1 17 7517819 7517819 + missense SNP G A G rs28934574 unknown TCGA-02-0004 TCGA-02-0004-10A-01W-0318-08 G G A G G G U Valid Somatic missense R282W R282W M 1.945 http://mutationassessor.org?cm=var&var=17,7517819,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R282W http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R282W -TP53 7157 broad.mit.edu 36.1 17 7517819 7517819 + missense SNP G A G rs28934574 unknown TCGA-02-0046 TCGA-02-0046-10A-01W-0189-08 G G A G G G U Valid Somatic missense R282W R282W M 1.945 http://mutationassessor.org?cm=var&var=17,7517819,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R282W http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R282W -TP53 7157 hgsc.bcm.edu 36 17 7517819 7517819 + missense SNP G G A rs28934574 unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G A G G G Unknown Valid Somatic missense R282W R282W M 1.945 http://mutationassessor.org?cm=var&var=17,7517819,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R282W http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R282W -TP53 7157 hgsc.bcm.edu 36 17 7517819 7517819 + missense SNP G G A rs28934574 unknown TCGA-02-0046 TCGA-02-0046-10A-01W G G A G G G Unknown Valid Somatic missense R282W R282W M 1.945 http://mutationassessor.org?cm=var&var=17,7517819,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R282W http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R282W -TP53 7157 broad.mit.edu 36.1 17 7517854 7517854 + missense SNP A A G TCGA-06-0197 TCGA-06-0197-10A-01W-0254-08 A A A G A A U Valid Somatic missense F270S F270S M 1.915 http://mutationassessor.org?cm=var&var=17,7517854,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=F270S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=F270S -TP53 7157 broad.mit.edu 36.1 17 7518933 7518933 + missense SNP T C T TCGA-06-0159 TCGA-06-0159-10A-01W-0254-08 T T C T T T U Valid Somatic missense H214R H214R M 1.895 http://mutationassessor.org?cm=var&var=17,7518933,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H214R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H214R -TP53 7157 broad.mit.edu 36.1 17 7517836 7517836 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense A276V A276V M 1.885 http://mutationassessor.org?cm=var&var=17,7517836,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=A276V http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=A276V -TP53 7157 hgsc.bcm.edu 36 17 7517836 7517836 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense A276V A276V M 1.885 http://mutationassessor.org?cm=var&var=17,7517836,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=A276V http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=A276V -TP53 7157 broad.mit.edu 36.1 17 7518273 7518273 + missense SNP C C T rs28934575 unknown TCGA-02-0048 TCGA-02-0048-10A-01W-0318-08 C C C T C C U Valid Somatic missense G245S G245S M 1.875 http://mutationassessor.org?cm=var&var=17,7518273,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245S -TP53 7157 broad.mit.edu 36.1 17 7518273 7518273 + missense SNP C C T rs28934575 unknown TCGA-06-0190 TCGA-06-0190-10B-01W-0254-08 C C C T C C U Valid Somatic missense G245S G245S M 1.875 http://mutationassessor.org?cm=var&var=17,7518273,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245S -TP53 7157 hgsc.bcm.edu 36 17 7518273 7518273 + missense SNP C C T rs28934575 unknown TCGA-06-0190 TCGA-06-0190-10B-01W C C C T C C Unknown Valid Somatic missense G245S G245S M 1.875 http://mutationassessor.org?cm=var&var=17,7518273,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245S http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245S -TP53 7157 broad.mit.edu 36.1 17 7519233 7519233 + missense SNP C A C TCGA-08-0359 TCGA-08-0359-11A-01W-0318-08 C C C A C C U Valid Somatic missense C141F C141F M 1.82 http://mutationassessor.org?cm=var&var=17,7519233,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C141F http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C141F -TP53 7157 hgsc.bcm.edu 36 17 7519233 7519233 + missense SNP C C A novel unknown TCGA-08-0359 TCGA-08-0359-11A-01W C C A C C C Unknown Valid Somatic missense C141F C141F M 1.82 http://mutationassessor.org?cm=var&var=17,7519233,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C141F http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C141F -TP53 7157 broad.mit.edu 36.1 17 7519165 7519165 + missense SNP T C T TCGA-12-0619 TCGA-12-0619-10A-01W-0323-08 T T C T T T U Valid Somatic missense K164E K164E M 1.765 http://mutationassessor.org?cm=var&var=17,7519165,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=K164E http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=K164E -TP53 7157 hgsc.bcm.edu 36 17 7519165 7519165 + missense SNP T T C novel unknown TCGA-12-0619 TCGA-12-0619-10A-01W T T C T T T Unknown Valid Somatic missense K164E K164E M 1.765 http://mutationassessor.org?cm=var&var=17,7519165,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=K164E http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=K164E -TP53 7157 broad.mit.edu 36.1 17 7519121 7519121 + missense SNP G G T TCGA-02-0003 TCGA-02-0003-10A-01W-0189-08 G G G T G G U Valid Somatic missense H178Q H178Q M 1.725 http://mutationassessor.org?cm=var&var=17,7519121,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H178Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H178Q -TP53 7157 hgsc.bcm.edu 36 17 7519121 7519121 + missense SNP G G T novel Unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G G T G G Unknown Valid Somatic missense H178Q H178Q M 1.725 http://mutationassessor.org?cm=var&var=17,7519121,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H178Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H178Q -TP53 7157 hgsc.bcm.edu 36 17 7519121 7519121 + missense SNP G G T novel unknown TCGA-02-0003 TCGA-02-0003-10A-01W G G G T G G Unknown Valid Somatic missense H178Q H178Q M 1.725 http://mutationassessor.org?cm=var&var=17,7519121,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H178Q http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H178Q -TP53 7157 broad.mit.edu 36.1 17 7518303 7518303 + missense SNP T C C TCGA-02-0074 TCGA-02-0074-10A-01W-0206-08 T T C C T T U Valid Somatic missense N235D N235D M 1.705 http://mutationassessor.org?cm=var&var=17,7518303,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=N235D http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=N235D -TP53 7157 hgsc.bcm.edu 36 17 7518303 7518303 + missense SNP T C C novel unknown TCGA-02-0074 TCGA-02-0074-10A-01W T T C T T T Unknown Valid Somatic missense N235D N235D M 1.705 http://mutationassessor.org?cm=var&var=17,7518303,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=N235D http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=N235D -TP53 7157 broad.mit.edu 36.1 17 7514713 7514713 + missense SNP C C T TCGA-08-0373 TCGA-08-0373-11A-01W-0323-08 C C T C C C U Valid Somatic missense A347T A347T M 1.58 http://mutationassessor.org?cm=var&var=17,7514713,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=318&re=359&var=A347T http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=318&to=359&var=A347T -TP53 7157 broad.mit.edu 36.1 17 7519188 7519188 + missense SNP C C G TCGA-02-0084 TCGA-02-0084-10A-01W-0323-08 C C G C C C U Valid Somatic missense R156P R156P M 1.575 http://mutationassessor.org?cm=var&var=17,7519188,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R156P http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R156P -TP53 7157 hgsc.bcm.edu 36 17 7519188 7519188 + missense SNP C C G novel unknown TCGA-02-0084 TCGA-02-0084-10A-01W C C C G C C Unknown Valid Somatic missense R156P R156P M 1.575 http://mutationassessor.org?cm=var&var=17,7519188,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R156P http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R156P -TP53 7157 hgsc.bcm.edu 36 17 7517651 7517651 + missense SNP G G A novel unknown TCGA-06-0188 TCGA-06-0188-10B-01W G G A G G G Unknown Valid Somatic missense A307V A307V M 1.415 http://mutationassessor.org?cm=var&var=17,7517651,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=201&re=393&var=A307V -TP53 7157 broad.mit.edu 36.1 17 7519257 7519257 + missense SNP A A C rs28934873 unknown TCGA-08-0360 TCGA-08-0360-11A-01W-0318-08 nt nt C A A A U Valid Somatic missense M133R M133R M 1.33 http://mutationassessor.org?cm=var&var=17,7519257,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=M133R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=M133R -TP53 7157 hgsc.bcm.edu 36 17 7519257 7519257 + missense SNP A A C novel unknown TCGA-08-0360 TCGA-08-0360-11A-01W A A A C A A Unknown Valid Somatic missense M133R M133R M 1.33 http://mutationassessor.org?cm=var&var=17,7519257,A,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=M133R http://mutationassessor.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=M133R -TP53 7157 genome.wustl.edu 36 17 7519237 7519238 + frameshift_del Del TC - - Unknown Unknown TCGA-06-0221 TCGA-06-0221-10A-01W TC TC TC - TC TC Valid Valid Somatic frameshift_del frameshift_del frameshift_del -TP53 7157 broad.mit.edu 36.1 17 7518937 7518937 + nonsense SNP G A G TCGA-02-0054 TCGA-02-0054-10A-01W-0189-08 G G G A G G U Valid Somatic nonsense R213* R213* -TP53 7157 hgsc.bcm.edu 36 17 7518937 7518937 + nonsense SNP G G A novel unknown TCGA-02-0054 TCGA-02-0054-10A-01W G G A G G G Unknown Valid Somatic nonsense R213* R213* -TP53 7157 broad.mit.edu 36.1 17 7514728 7514728 + nonsense SNP G A A TCGA-02-0024 TCGA-02-0024-10A-01W-0189-08 G G A A G G U Valid Somatic nonsense R342* R342* -TP53 7157 broad.mit.edu 36.1 17 7514728 7514728 + nonsense SNP G A G TCGA-02-0024 TCGA-02-0024-10A-01W-0189-08 G G A A G G U Valid Somatic nonsense R342* R342* -TP53 7157 hgsc.bcm.edu 36 17 7514728 7514728 + nonsense SNP G G A novel unknown TCGA-02-0024 TCGA-02-0024-10A-01W G G A A G G Unknown Valid Somatic nonsense R342* R342* -TP53 7157 hgsc.bcm.edu 36 17 7517652 7517652 + splice SNP C C T novel unknown TCGA-06-0188 TCGA-06-0188-10B-01W C C C T C C Unknown Valid Somatic splice splice splice -TPBG 7162 broad.mit.edu 36.1 6 83132625 83132625 + missense SNP A A G TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 A G G A A A U Valid Somatic missense R410G R410G L 0.975 http://mutationassessor.org?cm=var&var=6,83132625,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TPBG_HUMAN&rb=346&re=420&var=R410G -TRIP6 7205 broad.mit.edu 36.1 7 100306136 100306136 + missense SNP G C G TCGA-02-0046 TCGA-02-0046-10A-01W-0189-08 G G G C G G U Valid Somatic missense Q278H Q278H L 0.535 http://mutationassessor.org/?cm=msa&ty=f&p=TRIP6_HUMAN&rb=201&re=278&var=Q278H -UNG 7374 hgsc.bcm.edu 36 12 108019967 108019967 + missense SNP G G A novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense A34T A34T L 0.48 http://mutationassessor.org/?cm=msa&ty=f&p=UNG_HUMAN&rb=1&re=139&var=A34T -USF1 7391 hgsc.bcm.edu 36 1 159279079 159279079 + missense SNP C C T novel Unknown TCGA-02-0014 TCGA-02-0014-10A-01W C C C T C C Unknown Valid Somatic missense V22M V22M M 1.25 http://mutationassessor.org?cm=var&var=1,159279079,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=USF1_HUMAN&rb=1&re=199&var=V22M -VLDLR 7436 broad.mit.edu 36.1 9 2641922 2641922 + missense SNP G A G TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 G G A G G G U Valid Somatic missense G795E G795E M 1.375 http://mutationassessor.org?cm=var&var=9,2641922,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=VLDLR_HUMAN&rb=697&re=873&var=G795E -WNT2 7472 hgsc.bcm.edu 36 7 116705516 116705516 + missense SNP C C T novel unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C C T C C Unknown Valid Somatic missense D338N D338N M 1.32 http://mutationassessor.org?cm=var&var=7,116705516,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=WNT2_HUMAN&rb=40&re=349&var=D338N -ZNF85 7639 hgsc.bcm.edu 36 19 20909595 20909595 + missense SNP G G A novel unknown TCGA-06-0195 TCGA-06-0195-10A-01W G G A G G G Unknown Valid Somatic missense missense missense -ST7 7982 broad.mit.edu 36.1 7 116546849 116546849 + splice SNP A A G TCGA-02-0021 TCGA-02-0021-10A-01W-0189-08 A A G A A A U Valid Somatic splice splice splice -TUSC3 7991 hgsc.bcm.edu 36 8 15564045 15564045 + missense SNP T T C novel unknown TCGA-06-0128 TCGA-06-0128-10A-01W T T C T T T Unknown Valid Somatic missense F193L F193L L 0.615 http://mutationassessor.org?cm=var&var=8,15564045,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TUSC3_HUMAN&rb=177&re=331&var=F193L -DGKD 8527 broad.mit.edu 36.1 2 233961724 233961724 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G A G G G U Valid Somatic missense R80Q R80Q L 0.515 http://mutationassessor.org/?cm=msa&ty=f&p=DGKD_HUMAN&rb=54&re=146&var=R80Q http://mutationassessor.org/pdb.php?prot=DGKD_HUMAN&from=54&to=146&var=R80Q -AOC3 8639 broad.mit.edu 36.1 17 38258247 38258247 + missense SNP G A G TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 G G A G G G U Valid Somatic missense G454D G454D M 1.355 http://mutationassessor.org?cm=var&var=17,38258247,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AOC3_HUMAN&rb=313&re=724&var=G454D http://mutationassessor.org/pdb.php?prot=AOC3_HUMAN&from=313&to=724&var=G454D -AOC3 8639 broad.mit.edu 36.1 17 38258459 38258459 + missense SNP C C T TCGA-06-0209 TCGA-06-0209-10A-01W-0255-08 C C T C C C U Valid Somatic missense H525Y H525Y M 1.085 http://mutationassessor.org?cm=var&var=17,38258459,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AOC3_HUMAN&rb=313&re=724&var=H525Y http://mutationassessor.org/pdb.php?prot=AOC3_HUMAN&from=313&to=724&var=H525Y -ADAM15 8751 hgsc.bcm.edu 36 1 153299877 153299877 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense G741D G741D L 0.345 http://mutationassessor.org?cm=var&var=1,153299877,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ADA15_HUMAN&rb=687&re=755&var=G741D -ADAM15 8751 hgsc.bcm.edu 36 1 153293320 153293320 + missense SNP G G A novel unknown TCGA-02-0023 TCGA-02-0023-10A-01W G G A G G G Unknown Valid Somatic missense G138E G138E http://mutationassessor.org?cm=var&var=1,153293320,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ADA15_HUMAN&rb=12&re=167&var=G138E -TNFRSF10A 8797 hgsc.bcm.edu 36 8 23105230 23105230 + missense SNP C C G novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C G C C Unknown Valid Somatic missense K443N K443N L 0.59 http://mutationassessor.org?cm=var&var=8,23105230,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TR10A_HUMAN&rb=367&re=448&var=K443N -TNFRSF10A 8797 hgsc.bcm.edu 36 8 23138330 23138330 + missense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense P64S P64S L 0.12 http://mutationassessor.org/?cm=msa&ty=f&p=TR10A_HUMAN&rb=1&re=200&var=P64S -TNFRSF10A 8797 hgsc.bcm.edu 36 8 23138312 23138312 + missense SNP C C T novel Unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense A70T A70T L 0.065 http://mutationassessor.org/?cm=msa&ty=f&p=TR10A_HUMAN&rb=1&re=200&var=A70T -TRIM24 8805 hgsc.bcm.edu 36 7 137886376 137886376 + missense SNP G G A novel unknown TCGA-06-0171 TCGA-06-0171-10A-01W G G A G G G Unknown Valid Somatic missense R391H R391H L 0.975 http://mutationassessor.org?cm=var&var=7,137886376,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TIF1A_HUMAN&rb=261&re=419&var=R391H -IQGAP1 8826 hgsc.bcm.edu 36 15 88818012 88818012 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense S804F S804F L 0.55 http://mutationassessor.org/?cm=msa&ty=f&p=IQGA1_HUMAN&rb=775&re=804&var=S804F -WISP1 8840 hgsc.bcm.edu 36 8 134306873 134306873 + nonsense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic nonsense W223* W223* -CDC123 8872 broad.mit.edu 36.1 10 12331616 12331616 + missense SNP G A G TCGA-06-0141 TCGA-06-0141-10A-01W-0224-08 G G G A G G U Valid Somatic missense E293K E293K M 1.215 http://mutationassessor.org?cm=var&var=10,12331616,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CD123_HUMAN&rb=14&re=316&var=E293K -MAP3K6 9064 broad.mit.edu 36.1 1 27555547 27555547 + missense SNP C C T TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 C C T C C C U Valid Somatic missense E1186K E1186K M 1.28 http://mutationassessor.org?cm=var&var=1,27555547,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=M3K6_HUMAN&rb=1107&re=1288&var=E1186K -IL1RL1 9173 hgsc.bcm.edu 36 2 102332064 102332064 + missense SNP T T C novel unknown TCGA-02-0007 TCGA-02-0007-10A-01W T T C T T T Unknown Valid Somatic missense I404T I404T L 0.27 http://mutationassessor.org/?cm=msa&ty=f&p=ILRL1_HUMAN&rb=379&re=534&var=I404T http://mutationassessor.org/pdb.php?prot=ILRL1_HUMAN&from=379&to=534&var=I404T -CRLF1 9244 broad.mit.edu 36.1 19 18571416 18571416 + missense SNP C C T TCGA-06-0168 TCGA-06-0168-10A-01W-0254-08 C C C T C C U Valid Somatic missense R119H R119H N 0 http://mutationassessor.org/?cm=msa&ty=f&p=CRLF1_HUMAN&rb=38&re=131&var=R119H -SLIT2 9353 broad.mit.edu 36.1 4 20156799 20156799 + missense SNP A A G TCGA-06-0128 TCGA-06-0128-10A-01W-0224-08 A A A G A A U Valid Somatic missense N775S N775S N -0.165 http://mutationassessor.org?cm=var&var=4,20156799,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SLIT2_HUMAN&rb=724&re=807&var=N775S http://mutationassessor.org/pdb.php?prot=SLIT2_HUMAN&from=724&to=807&var=N775S -NRXN3 9369 broad.mit.edu 36.1 14 79397758 79397758 + splice SNP G A G TCGA-02-0016 TCGA-02-0016-10A-01W-0318-08 G G G A G G U Valid Somatic splice splice splice -KIF3B 9371 hgsc.bcm.edu 36 20 30361377 30361377 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense P46S P46S M 1.335 http://mutationassessor.org?cm=var&var=20,30361377,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KIF3B_HUMAN&rb=15&re=340&var=P46S http://mutationassessor.org/pdb.php?prot=KIF3B_HUMAN&from=15&to=340&var=P46S -ONECUT2 9480 broad.mit.edu 36.1 18 53294846 53294846 + missense SNP G A G TCGA-06-0171 TCGA-06-0171-10A-01W-0254-08 G G G A G G U Valid Somatic missense V451I V451I H 2.095 http://mutationassessor.org?cm=var&var=18,53294846,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ONEC2_HUMAN&rb=408&re=463&var=V451I http://mutationassessor.org/pdb.php?prot=ONEC2_HUMAN&from=408&to=463&var=V451I -GDF15 9518 hgsc.bcm.edu 36 19 18358024 18358024 + missense SNP G G G rs1059519 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-06-0165 TCGA-06-0165-10A-01W G C G G C C Unknown Valid Somatic missense V9V V9V N 0 http://mutationassessor.org/?cm=msa&ty=f&p=GDF15_HUMAN&rb=1&re=200&var=V9V -BCAR1 9564 hgsc.bcm.edu 36 16 73821184 73821184 + missense SNP G G A novel Unknown TCGA-06-0176 TCGA-06-0176-10A-01W G G A G G G Unknown Valid Somatic missense A780V A780V M 1.51 http://mutationassessor.org?cm=var&var=16,73821184,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BCAR1_HUMAN&rb=648&re=865&var=A780V -BCAR1 9564 hgsc.bcm.edu 36 16 73821184 73821184 + missense SNP G G A novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W G G A G G G Unknown Valid Somatic missense A780V A780V M 1.51 http://mutationassessor.org?cm=var&var=16,73821184,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BCAR1_HUMAN&rb=648&re=865&var=A780V -BCAR1 9564 hgsc.bcm.edu 36 16 73821401 73821401 + missense SNP C C T novel unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C C T C C Unknown Valid Somatic missense E708K E708K M 1.17 http://mutationassessor.org?cm=var&var=16,73821401,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BCAR1_HUMAN&rb=648&re=865&var=E708K -CLOCK 9575 hgsc.bcm.edu 36 4 56019892 56019892 + missense SNP C C T novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense R239H R239H M 1.25 http://mutationassessor.org?cm=var&var=4,56019892,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CLOCK_HUMAN&rb=201&re=400&var=R239H -CLOCK 9575 hgsc.bcm.edu 36 4 56003507 56003507 + missense SNP G G T novel unknown TCGA-06-0124 TCGA-06-0124-10A-01W G G G T G G Unknown Valid Somatic missense Q652K Q652K M 1.095 http://mutationassessor.org?cm=var&var=4,56003507,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CLOCK_HUMAN&rb=574&re=773&var=Q652K -MLL4 9757 broad.mit.edu 36.1 19 40903582 40903582 + missense SNP C A A TCGA-02-0057 TCGA-02-0057-10A-01W-0189-08 C C C A U Valid Somatic missense T498N T498N N 0 http://mutationassessor.org/?cm=msa&ty=f&p=MLL4_HUMAN&rb=448&re=547&var=T498N -MLL4 9757 broad.mit.edu 36.1 19 40908522 40908522 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense missense missense -MLL4 9757 broad.mit.edu 36.1 19 40916372 40916372 + missense SNP C C T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 C C C T C C U Valid Somatic missense missense missense -ZC3H11A 9877 hgsc.bcm.edu 36 1 202084081 202084081 + splice SNP G G A novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G A G G G Unknown Valid Somatic splice splice splice -KLHL21 9903 hgsc.bcm.edu 36 1 6576172 6576172 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense R545Q R545Q L 0.655 http://mutationassessor.org?cm=var&var=1,6576172,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KLH21_HUMAN&rb=502&re=547&var=R545Q http://mutationassessor.org/pdb.php?prot=KLH21_HUMAN&from=502&to=547&var=R545Q -SLC12A6 9990 hgsc.bcm.edu 36 15 32334819 32334819 + missense SNP C C T novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C C T C C Unknown Valid Somatic missense C271Y C271Y M 1.46 http://mutationassessor.org?cm=var&var=15,32334819,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=S12A6_HUMAN&rb=190&re=384&var=C271Y -SLC12A6 9990 hgsc.bcm.edu 36 15 32334754 32334754 + splice SNP C C T novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C C T C C Unknown Valid Somatic splice splice splice -ABI1 10006 hgsc.bcm.edu 36 10 27106149 27106149 + missense SNP C C T novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W C C C T C C Unknown Valid Somatic missense A105T A105T M 1.89 http://mutationassessor.org?cm=var&var=10,27106149,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ABI1_HUMAN&rb=93&re=171&var=A105T -CTDSP2 10106 hgsc.bcm.edu 36 12 56509566 56509566 + missense SNP G G A novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G A G G G Unknown Valid Somatic missense H49Y H49Y L 0.36 http://mutationassessor.org/?cm=msa&ty=f&p=CTDS2_HUMAN&rb=1&re=101&var=H49Y -SLC25A13 10165 broad.mit.edu 36.1 7 95676178 95676178 + missense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G A G G G U Valid Somatic missense P126S P126S M 1.475 http://mutationassessor.org?cm=var&var=7,95676178,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CMC2_HUMAN&rb=125&re=157&var=P126S -TNK2 10188 broad.mit.edu 36.1 3 197106537 197106537 + missense SNP C C T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 C C C T C C U Valid Somatic missense missense missense -TNK2 10188 broad.mit.edu 36.1 3 197096286 197096286 + nonsense SNP G A G TCGA-02-0043 TCGA-02-0043-10A-01W-0189-08 G G G A G G U Valid Somatic nonsense R84* R84* -TNK2 10188 broad.mit.edu 36.1 3 197098255 197098255 + nonsense SNP C C T TCGA-06-0189 TCGA-06-0189-10A-01W-0254-08 C C C T C C U Valid Somatic nonsense W75* W75* -TNK2 10188 broad.mit.edu 36.1 3 197098255 197098255 + nonsense SNP C T T TCGA-06-0189 TCGA-06-0189-10A-01W-0254-08 C C C T C C U Valid Somatic nonsense W75* W75* -ABCC4 10257 broad.mit.edu 36.1 13 94484895 94484895 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C T T C C U Valid Somatic missense A1279T A1279T L 0.195 http://mutationassessor.org/?cm=msa&ty=f&p=MRP4_HUMAN&rb=1206&re=1325&var=A1279T -ABCC4 10257 broad.mit.edu 36.1 13 94613377 94613377 + missense SNP C C G TCGA-02-0037 TCGA-02-0037-10A-01W-0189-08 C C C G C C U Valid Somatic missense missense missense -IFITM3 10410 broad.mit.edu 36.1 11 310606 310606 + missense SNP G T T TCGA-02-0070 TCGA-02-0070-10A-01W-0318-08 G G G T G G U Valid Somatic missense P70T P70T L 0.85 http://mutationassessor.org?cm=var&var=11,310606,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IFM3_HUMAN&rb=41&re=122&var=P70T -IFITM3 10410 broad.mit.edu 36.1 11 310803 310803 + missense SNP G A A TCGA-02-0070 TCGA-02-0070-10A-01W-0318-08 G G A G G G U Valid Somatic missense T4I T4I L 0.5 http://mutationassessor.org/?cm=msa&ty=f&p=IFM3_HUMAN&rb=1&re=40&var=T4I -IFITM3 10410 broad.mit.edu 36.1 11 309855 309855 + missense SNP A C C TCGA-06-0143 TCGA-06-0143-10A-01W-0224-08 A A C A A A U Valid Somatic missense F129V F129V N -0.03 http://mutationassessor.org/?cm=msa&ty=f&p=IFM3_HUMAN&rb=93&re=133&var=F129V -LRRN2 10446 hgsc.bcm.edu 36 1 202854501 202854501 + missense SNP C C T novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C C T C C Unknown Valid Somatic missense E415K E415K L 0.82 http://mutationassessor.org?cm=var&var=1,202854501,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=LRRN2_HUMAN&rb=335&re=426&var=E415K http://mutationassessor.org/pdb.php?prot=LRRN2_HUMAN&from=335&to=426&var=E415K -CCT2 10576 hgsc.bcm.edu 36 12 68267987 68267987 + missense SNP G G C novel unknown TCGA-02-0099 TCGA-02-0099-10A-01W G G C G G G Unknown Valid Somatic missense R89S R89S M 1.4 http://mutationassessor.org?cm=var&var=12,68267987,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TCPB_HUMAN&rb=35&re=525&var=R89S http://mutationassessor.org/pdb.php?prot=TCPB_HUMAN&from=35&to=525&var=R89S -TRIM3 10612 broad.mit.edu 36.1 11 6434421 6434421 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C T C C C U Valid Somatic missense G371S G371S M 1.42 http://mutationassessor.org?cm=var&var=11,6434421,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TRIM3_HUMAN&rb=319&re=415&var=G371S http://mutationassessor.org/pdb.php?prot=TRIM3_HUMAN&from=319&to=415&var=G371S -AVIL 10677 broad.mit.edu 36.1 12 56482213 56482213 + nonsense SNP C C T TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 C C C T C C U Valid Somatic nonsense W716* W716* -DLL3 10683 hgsc.bcm.edu 36 19 44681933 44681933 + missense SNP C C T novel unknown TCGA-06-0169 TCGA-06-0169-10A-01W C C C T C C Unknown Valid Somatic missense P111S P111S M 1.225 http://mutationassessor.org?cm=var&var=19,44681933,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DLL3_HUMAN&rb=95&re=213&var=P111S -DLL3 10683 hgsc.bcm.edu 36 19 44681912 44681912 + missense SNP C C T novel unknown TCGA-06-0169 TCGA-06-0169-10A-01W C C C T C C Unknown Valid Somatic missense P104S P104S L 0.67 http://mutationassessor.org?cm=var&var=19,44681912,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DLL3_HUMAN&rb=95&re=213&var=P104S -CHL1 10752 broad.mit.edu 36.1 3 366197 366197 + missense SNP C C T TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 C C C T C C U Valid Somatic missense A319V A319V L 0.715 http://mutationassessor.org/?cm=msa&ty=f&p=CHL1_HUMAN&rb=241&re=327&var=A319V http://mutationassessor.org/pdb.php?prot=CHL1_HUMAN&from=241&to=327&var=A319V -CHL1 10752 broad.mit.edu 36.1 3 357596 357596 + missense SNP A A G TCGA-02-0084 TCGA-02-0084-10A-01W-0323-08 nt nt A G A A U Valid Somatic missense I169V I169V L 0.475 http://mutationassessor.org/?cm=msa&ty=f&p=CHL1_HUMAN&rb=128&re=223&var=I169V http://mutationassessor.org/pdb.php?prot=CHL1_HUMAN&from=128&to=223&var=I169V -PRSS23 11098 hgsc.bcm.edu 36 11 86197189 86197189 + nonsense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic nonsense R286* R286* -CHEK2 11200 broad.mit.edu 36.1 22 27421840 27421840 + missense SNP T C T TCGA-02-0084 TCGA-02-0084-10A-01W-0323-08 T T C T T T U Valid Somatic missense K373E K373E M 1.71 http://mutationassessor.org?cm=var&var=22,27421840,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=220&re=486&var=K373E http://mutationassessor.org/pdb.php?prot=CHK2_HUMAN&from=220&to=486&var=K373E -CHEK2 11200 broad.mit.edu 36.1 22 27413910 27413910 + missense SNP G A G TCGA-02-0069 TCGA-02-0069-10A-01W-0206-08 G G G A G G U Valid Somatic missense P536L P536L L 0.31 http://mutationassessor.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=401&re=543&var=P536L -CHEK2 11200 broad.mit.edu 36.1 22 27413910 27413910 + missense SNP G A G TCGA-02-0075 TCGA-02-0075-10A-01W-0206-08 G G G A G G U Valid Somatic missense P536L P536L L 0.31 http://mutationassessor.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=401&re=543&var=P536L -CHEK2 11200 broad.mit.edu 36.1 22 27413910 27413910 + missense SNP G A G TCGA-02-0115 TCGA-02-0115-10A-01W-0206-08 G G G A G G U Valid Somatic missense P536L P536L L 0.31 http://mutationassessor.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=401&re=543&var=P536L -CHEK2 11200 broad.mit.edu 36.1 22 27413910 27413910 + missense SNP G A G TCGA-06-0209 TCGA-06-0209-10A-01W-0255-08 G G G A G G U Valid Somatic missense P536L P536L L 0.31 http://mutationassessor.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=401&re=543&var=P536L -KLK8 11202 broad.mit.edu 36.1 19 56195600 56195600 + missense SNP G A G TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 G G A G G G U Valid Somatic missense P41L P41L H 2.15 http://mutationassessor.org?cm=var&var=19,56195600,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KLK8_HUMAN&rb=33&re=252&var=P41L http://mutationassessor.org/pdb.php?prot=KLK8_HUMAN&from=33&to=252&var=P41L -IRAK3 11213 broad.mit.edu 36.1 12 64925008 64925008 + missense SNP T C T TCGA-02-0085 TCGA-02-0085-10A-01W-0206-08 T T C T T T U Valid Somatic missense V367A V367A M 1.11 http://mutationassessor.org?cm=var&var=12,64925008,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=IRAK3_HUMAN&rb=165&re=443&var=V367A http://mutationassessor.org/pdb.php?prot=IRAK3_HUMAN&from=165&to=443&var=V367A -AKAP2 11217 broad.mit.edu 36.1 9 111938487 111938487 + missense SNP C A C TCGA-06-0210 TCGA-06-0210-10A-01W-0255-08 C C C A C C U Valid Somatic missense missense missense -AKAP2 11217 broad.mit.edu 36.1 9 111939141 111939141 + missense SNP G A G TCGA-02-0025 TCGA-02-0025-10A-01W-0318-08 G G G A G G U Valid Somatic missense missense missense -FKBP9 11328 broad.mit.edu 36.1 7 32980852 32980852 + missense SNP G A G rs2953555 unknown TCGA-02-0023 TCGA-02-0023-10A-01W-0318-08 G G A G G G U Valid Somatic missense R107H R107H H 2.925 http://mutationassessor.org?cm=var&var=7,32980852,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FKBP9_HUMAN&rb=45&re=139&var=R107H http://mutationassessor.org/pdb.php?prot=FKBP9_HUMAN&from=45&to=139&var=R107H -FKBP9 11328 broad.mit.edu 36.1 7 32980852 32980852 + missense SNP G A A rs2953555 unknown TCGA-02-0048 TCGA-02-0048-10A-01W-0318-08 G G A A G G U Valid Somatic missense R107H R107H H 2.925 http://mutationassessor.org?cm=var&var=7,32980852,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FKBP9_HUMAN&rb=45&re=139&var=R107H http://mutationassessor.org/pdb.php?prot=FKBP9_HUMAN&from=45&to=139&var=R107H -FKBP9 11328 broad.mit.edu 36.1 7 32980852 32980852 + missense SNP G A G rs2953555 unknown TCGA-02-0070 TCGA-02-0070-10A-01W-0318-08 G G A G G G U Valid Somatic missense R107H R107H H 2.925 http://mutationassessor.org?cm=var&var=7,32980852,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FKBP9_HUMAN&rb=45&re=139&var=R107H http://mutationassessor.org/pdb.php?prot=FKBP9_HUMAN&from=45&to=139&var=R107H -FKBP9 11328 broad.mit.edu 36.1 7 32980852 32980852 + missense SNP G A G rs2953555 unknown TCGA-08-0245 TCGA-08-0245-11A-01W-0318-08 G G A G G G U Valid Somatic missense R107H R107H H 2.925 http://mutationassessor.org?cm=var&var=7,32980852,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FKBP9_HUMAN&rb=45&re=139&var=R107H http://mutationassessor.org/pdb.php?prot=FKBP9_HUMAN&from=45&to=139&var=R107H -FKBP9 11328 broad.mit.edu 36.1 7 32980852 32980852 + missense SNP G A G rs2953555 unknown TCGA-08-0386 TCGA-08-0386-11A-01W-0323-08 A A A G A A U Valid Somatic missense R107H R107H H 2.925 http://mutationassessor.org?cm=var&var=7,32980852,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FKBP9_HUMAN&rb=45&re=139&var=R107H http://mutationassessor.org/pdb.php?prot=FKBP9_HUMAN&from=45&to=139&var=R107H -FKBP9 11328 broad.mit.edu 36.1 7 32980852 32980852 + missense SNP G A G rs2953555 unknown TCGA-12-0616 TCGA-12-0616-10A-01W-0323-08 G G A G G G U Valid Somatic missense R107H R107H H 2.925 http://mutationassessor.org?cm=var&var=7,32980852,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FKBP9_HUMAN&rb=45&re=139&var=R107H http://mutationassessor.org/pdb.php?prot=FKBP9_HUMAN&from=45&to=139&var=R107H -PDZD2 23037 broad.mit.edu 36.1 5 32124997 32124997 + missense SNP G A G TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 G G A G G G U Valid Somatic missense V1896I V1896I N 0 http://mutationassessor.org/?cm=msa&ty=f&p=PDZD2_HUMAN&rb=1363&re=2324&var=V1896I -SNX13 23161 hgsc.bcm.edu 36 7 17881916 17881916 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense P155S P155S L 0.375 http://mutationassessor.org?cm=var&var=7,17881916,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SNX13_HUMAN&rb=97&re=283&var=P155S -MAPK8IP3 23162 broad.mit.edu 36.1 16 1758607 1758607 + missense SNP G A A TCGA-06-0139 TCGA-06-0139-10A-01W-0224-08 G G A G G G U Valid Somatic missense G1290S G1290S H 2.04 http://mutationassessor.org?cm=var&var=16,1758607,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=JIP3_HUMAN&rb=961&re=1335&var=G1290S -SNF1LK2 23235 broad.mit.edu 36.1 11 111095932 111095932 + missense SNP G A A TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense missense missense -SNF1LK2 23235 broad.mit.edu 36.1 11 111095932 111095932 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense missense missense -SNF1LK2 23235 broad.mit.edu 36.1 11 111096956 111096956 + missense SNP C C T TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 C C T C C C U Valid Somatic missense missense missense -PHLPP 23239 broad.mit.edu 36.1 18 58790915 58790915 + missense SNP T C T TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 T T T C T T U Valid Somatic missense M1250T M1250T http://mutationassessor.org/?cm=msa&ty=f&p=PHLPP_HUMAN&rb=1174&re=1415&var=M1250T -SYNE1 23345 hgsc.bcm.edu 36 6 152569061 152569061 + missense SNP C C T novel unknown TCGA-02-0099 TCGA-02-0099-10A-01W C C C T C C Unknown Valid Somatic missense E7652K E7652K L 0.965 http://mutationassessor.org?cm=var&var=6,152569061,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=7454&re=7653&var=E7652K -SYNE1 23345 hgsc.bcm.edu 36 6 152762605 152762605 + missense SNP G G A novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense T2359I T2359I L 0.865 http://mutationassessor.org?cm=var&var=6,152762605,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=2310&re=2509&var=T2359I -SYNE1 23345 hgsc.bcm.edu 36 6 152583692 152583692 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense A7280V A7280V L 0.55 http://mutationassessor.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=7234&re=7351&var=A7280V -SYNE1 23345 hgsc.bcm.edu 36 6 152679811 152679811 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense A5526T A5526T L 0.385 http://mutationassessor.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=5250&re=5547&var=A5526T -SYNE1 23345 hgsc.bcm.edu 36 6 152706954 152706954 + missense SNP C C A rs4645434 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-06-0178 TCGA-06-0178-10B-01W C C A C C C Unknown Valid Somatic missense E4060D E4060D L 0.26 http://mutationassessor.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=3920&re=4119&var=E4060D -SYNE1 23345 hgsc.bcm.edu 36 6 152619557 152619557 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense P6337S P6337S L 0.205 http://mutationassessor.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=6236&re=6435&var=P6337S -SYNE1 23345 hgsc.bcm.edu 36 6 152796651 152796651 + missense SNP G G A novel unknown TCGA-02-0014 TCGA-02-0014-10A-01W G G A G G G Unknown Valid Somatic missense A1478V A1478V N 0 http://mutationassessor.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=1401&re=1600&var=A1478V -SYNE1 23345 hgsc.bcm.edu 36 6 152716523 152716523 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -SYNE1 23345 hgsc.bcm.edu 36 6 152779723 152779723 + missense SNP C C T novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -SYNE1 23345 hgsc.bcm.edu 36 6 152671412 152671412 + nonsense SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic nonsense Q5751* Q5751* -MYST4 23522 broad.mit.edu 36.1 10 76407199 76407199 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense E705K E705K L 0.69 http://mutationassessor.org?cm=var&var=10,76407199,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MYST4_HUMAN&rb=601&re=800&var=E705K -MYST4 23522 broad.mit.edu 36.1 10 76458537 76458537 + missense SNP G A G TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 G G G A G G U Valid Somatic missense A1317T A1317T L 0.55 http://mutationassessor.org?cm=var&var=10,76458537,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MYST4_HUMAN&rb=1275&re=1532&var=A1317T -MYST4 23522 broad.mit.edu 36.1 10 76459177 76459177 + missense SNP G A G TCGA-02-0043 TCGA-02-0043-10A-01W-0189-08 G G G A G G U Valid Somatic missense G1530E G1530E L 0.55 http://mutationassessor.org?cm=var&var=10,76459177,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MYST4_HUMAN&rb=1275&re=1532&var=G1530E -PRAME 23532 hgsc.bcm.edu 36 22 21229234 21229234 + missense SNP A A G rs2266988 by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop TCGA-02-0068 TCGA-02-0068-10A-01W A G G G A A Unknown Valid Somatic missense W7R W7R -PRAME 23532 hgsc.bcm.edu 36 22 21229234 21229234 + missense SNP A A A rs2266988 by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop TCGA-08-0353 TCGA-08-0353-11A-01W A G A G G G Unknown Valid Somatic missense missense missense -PRAME 23532 hgsc.bcm.edu 36 22 21229234 21229234 + missense SNP A A A rs2266988 by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop TCGA-12-0619 TCGA-12-0619-10A-01W G G A G G G Unknown Valid Somatic missense missense missense -MAPK8IP2 23542 broad.mit.edu 36.1 22 49395592 49395592 + missense SNP C T T TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 C C T C C C U Valid Somatic missense missense missense -LEMD3 23592 hgsc.bcm.edu 36 12 63851109 63851109 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense G489E G489E L 0.805 http://mutationassessor.org?cm=var&var=12,63851109,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MAN1_HUMAN&rb=450&re=504&var=G489E -LEMD3 23592 hgsc.bcm.edu 36 12 63851030 63851030 + missense SNP T T C novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T C T T T Unknown Valid Somatic missense S463P S463P L 0.695 http://mutationassessor.org?cm=var&var=12,63851030,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MAN1_HUMAN&rb=450&re=504&var=S463P -LEMD3 23592 hgsc.bcm.edu 36 12 63849861 63849861 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -BCL2L13 23786 hgsc.bcm.edu 36 22 16590158 16590158 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense G439D G439D L 0.695 http://mutationassessor.org?cm=var&var=22,16590158,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=B2L13_HUMAN&rb=211&re=484&var=G439D -SPDEF 25803 broad.mit.edu 36.1 6 34616933 34616933 + missense SNP G C G TCGA-06-0154 TCGA-06-0154-10A-01W-0254-08 G G G C G G U Valid Somatic missense P147R P147R H 2.525 http://mutationassessor.org?cm=var&var=6,34616933,G,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=SPDEF_HUMAN&rb=131&re=213&var=P147R http://mutationassessor.org/pdb.php?prot=SPDEF_HUMAN&from=131&to=213&var=P147R -PRKD2 25865 broad.mit.edu 36.1 19 51892838 51892838 + missense SNP C C T TCGA-02-0080 TCGA-02-0080-10A-01W-0206-08 C C C T C C U Valid Somatic missense D411N D411N M 1.725 http://mutationassessor.org?cm=var&var=19,51892838,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KPCD2_HUMAN&rb=398&re=507&var=D411N http://mutationassessor.org/pdb.php?prot=KPCD2_HUMAN&from=398&to=507&var=D411N -UPF2 26019 broad.mit.edu 36.1 10 12038348 12038348 + missense SNP C T T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense E851K E851K H 2.74 http://mutationassessor.org?cm=var&var=10,12038348,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RENT2_HUMAN&rb=773&re=986&var=E851K http://mutationassessor.org/pdb.php?prot=RENT2_HUMAN&from=773&to=986&var=E851K -UPF2 26019 broad.mit.edu 36.1 10 12061106 12061106 + missense SNP C A C TCGA-02-0084 TCGA-02-0084-10A-01W-0323-08 C C C A C C U Valid Somatic missense A637S A637S L 0.425 http://mutationassessor.org/?cm=msa&ty=f&p=RENT2_HUMAN&rb=570&re=758&var=A637S -TBK1 29110 broad.mit.edu 36.1 12 63175611 63175611 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense A535T A535T N -0.695 http://mutationassessor.org/?cm=msa&ty=f&p=TBK1_HUMAN&rb=401&re=600&var=A535T -NME7 29922 hgsc.bcm.edu 36 1 167534446 167534446 + missense SNP C C T novel Unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense G207D G207D H 3.24 http://mutationassessor.org?cm=var&var=1,167534446,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NDK7_HUMAN&rb=92&re=226&var=G207D http://mutationassessor.org/pdb.php?prot=NDK7_HUMAN&from=92&to=226&var=G207D -NME7 29922 hgsc.bcm.edu 36 1 167534446 167534446 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense G207D G207D H 3.24 http://mutationassessor.org?cm=var&var=1,167534446,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=NDK7_HUMAN&rb=92&re=226&var=G207D http://mutationassessor.org/pdb.php?prot=NDK7_HUMAN&from=92&to=226&var=G207D -GLTSCR2 29997 broad.mit.edu 36.1 19 52951764 52951764 + missense SNP C C T TCGA-08-0357 TCGA-08-0357-11A-01W-0318-08 C C T C C C U Valid Somatic missense R461C R461C L 0.895 http://mutationassessor.org?cm=var&var=19,52951764,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GSCR2_HUMAN&rb=447&re=478&var=R461C -PI15 51050 broad.mit.edu 36.1 8 75920181 75920181 + missense SNP G A A TCGA-02-0080 TCGA-02-0080-10A-01W-0206-08 G G A G G G U Valid Somatic missense A179T A179T H 2.07 http://mutationassessor.org?cm=var&var=8,75920181,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PI15_HUMAN&rb=71&re=211&var=A179T http://mutationassessor.org/pdb.php?prot=PI15_HUMAN&from=71&to=211&var=A179T -PI15 51050 broad.mit.edu 36.1 8 75920181 75920181 + missense SNP G A G TCGA-02-0080 TCGA-02-0080-10A-01W-0206-08 G G A G G G U Valid Somatic missense A179T A179T H 2.07 http://mutationassessor.org?cm=var&var=8,75920181,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PI15_HUMAN&rb=71&re=211&var=A179T http://mutationassessor.org/pdb.php?prot=PI15_HUMAN&from=71&to=211&var=A179T -PI15 51050 broad.mit.edu 36.1 8 75923999 75923999 + missense SNP T A T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 T T T A T T U Valid Somatic missense C245S C245S M 1.905 http://mutationassessor.org?cm=var&var=8,75923999,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PI15_HUMAN&rb=201&re=258&var=C245S -ING4 51147 broad.mit.edu 36.1 12 6630758 6630758 + missense SNP C C T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense G235R G235R M 1.905 http://mutationassessor.org?cm=var&var=12,6630758,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ING4_HUMAN&rb=198&re=245&var=G235R http://mutationassessor.org/pdb.php?prot=ING4_HUMAN&from=198&to=245&var=G235R -ING4 51147 broad.mit.edu 36.1 12 6630758 6630758 + missense SNP C T T TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 C C C T C C U Valid Somatic missense G235R G235R M 1.905 http://mutationassessor.org?cm=var&var=12,6630758,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ING4_HUMAN&rb=198&re=245&var=G235R http://mutationassessor.org/pdb.php?prot=ING4_HUMAN&from=198&to=245&var=G235R -ING4 51147 broad.mit.edu 36.1 12 6630798 6630798 + nonsense SNP C C T TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 C C T C C C U Valid Somatic nonsense W221* W221* -TAOK3 51347 broad.mit.edu 36.1 12 117103657 117103657 + missense SNP G A A TCGA-02-0075 TCGA-02-0075-10A-01W-0206-08 G G A A G G U Valid Somatic missense R490C R490C M 1.225 http://mutationassessor.org?cm=var&var=12,117103657,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TAOK3_HUMAN&rb=478&re=677&var=R490C -TRIM33 51592 broad.mit.edu 36.1 1 114742087 114742087 + nonsense SNP T A T TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 nt nt T A T T U Valid Somatic nonsense K1057* K1057* -TMBIM4 51643 hgsc.bcm.edu 36 12 64818021 64818021 + missense SNP C C T novel unknown TCGA-02-0014 TCGA-02-0014-10A-01W C C C T C C Unknown Valid Somatic missense V235I V235I L 0.585 http://mutationassessor.org?cm=var&var=12,64818021,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TMBI4_HUMAN&rb=205&re=238&var=V235I -BCL11A 53335 broad.mit.edu 36.1 2 60541333 60541333 + missense SNP G A A TCGA-06-0176 TCGA-06-0176-10A-01W-0254-08 G G G A G G U Valid Somatic missense R740C R740C M 1.825 http://mutationassessor.org?cm=var&var=2,60541333,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BC11A_HUMAN&rb=601&re=800&var=R740C http://mutationassessor.org/pdb.php?prot=BC11A_HUMAN&from=601&to=800&var=R740C -BCL11A 53335 broad.mit.edu 36.1 2 60542986 60542986 + missense SNP C C T TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 C C T C C C U Valid Somatic missense A189T A189T M 1.33 http://mutationassessor.org?cm=var&var=2,60542986,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BC11A_HUMAN&rb=1&re=200&var=A189T -BCL11A 53335 broad.mit.edu 36.1 2 60542382 60542382 + missense SNP C T T TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 C C C T C C U Valid Somatic missense S390N S390N L 0.805 http://mutationassessor.org?cm=var&var=2,60542382,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BC11A_HUMAN&rb=378&re=399&var=S390N -BCL11A 53335 broad.mit.edu 36.1 2 60542638 60542638 + missense SNP G A G TCGA-02-0083 TCGA-02-0083-10A-01W-0206-08 G G G A G G U Valid Somatic missense P305S P305S L 0.315 http://mutationassessor.org/?cm=msa&ty=f&p=BC11A_HUMAN&rb=201&re=400&var=P305S -BCL11A 53335 broad.mit.edu 36.1 2 60542011 60542011 + missense SNP C C T TCGA-06-0133 TCGA-06-0133-10A-01W-0224-08 C C T C C C U Valid Somatic missense G514S G514S N -0.18 http://mutationassessor.org/?cm=msa&ty=f&p=BC11A_HUMAN&rb=401&re=600&var=G514S -MYO3A 53904 broad.mit.edu 36.1 10 26399055 26399055 + missense SNP C A C TCGA-02-0055 TCGA-02-0055-10A-01W-0189-08 C C C A C C U Valid Somatic missense L394I L394I L 0.89 http://mutationassessor.org?cm=var&var=10,26399055,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MYO3A_HUMAN&rb=340&re=1041&var=L394I http://mutationassessor.org/pdb.php?prot=MYO3A_HUMAN&from=340&to=1041&var=L394I -APBB1IP 54518 broad.mit.edu 36.1 10 26865111 26865111 + missense SNP C C T TCGA-06-0154 TCGA-06-0154-10A-01W-0254-08 C C C T C C U Valid Somatic missense R335W R335W H 2.25 http://mutationassessor.org?cm=var&var=10,26865111,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=AB1IP_HUMAN&rb=311&re=419&var=R335W http://mutationassessor.org/pdb.php?prot=AB1IP_HUMAN&from=311&to=419&var=R335W -C9orf11 54586 hgsc.bcm.edu 36 9 27284380 27284380 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense P75S P75S L 0.205 http://mutationassessor.org/?cm=msa&ty=f&p=AFAF_HUMAN&rb=1&re=200&var=P75S -BCAS3 54828 hgsc.bcm.edu 36 17 56447963 56447963 + missense SNP C C T novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C C T C C Unknown Valid Somatic missense P519L P519L M 1.1 http://mutationassessor.org?cm=var&var=17,56447963,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BCAS3_HUMAN&rb=401&re=600&var=P519L -BCAS3 54828 hgsc.bcm.edu 36 17 56240210 56240210 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense G156E G156E L 0.755 http://mutationassessor.org?cm=var&var=17,56240210,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=BCAS3_HUMAN&rb=1&re=200&var=G156E -ETNK2 55224 broad.mit.edu 36.1 1 202387575 202387575 + missense SNP G G G rs3737655 unknown TCGA-06-0190 TCGA-06-0190-10B-01W-0254-08 nt nt G T G G U Valid Somatic missense missense missense -FBXW7 55294 broad.mit.edu 36.1 4 153463593 153463593 + missense SNP C C T TCGA-02-0028 TCGA-02-0028-10A-01W-0189-08 C C C T C C U Valid Somatic missense V672M V672M M 1.955 http://mutationassessor.org?cm=var&var=4,153463593,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FBXW7_HUMAN&rb=601&re=707&var=V672M http://mutationassessor.org/pdb.php?prot=FBXW7_HUMAN&from=601&to=707&var=V672M -FBXW7 55294 broad.mit.edu 36.1 4 153471357 153471357 + nonsense SNP G A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 G G G A G G U Valid Somatic nonsense R367* R367* -FBXW7 55294 hgsc.bcm.edu 36 4 153471357 153471357 + nonsense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic nonsense R367* R367* -DHTKD1 55526 broad.mit.edu 36.1 10 12199705 12199705 + missense SNP G A G TCGA-02-0114 TCGA-02-0114-10A-01W-0206-08 G G G A G G U Valid Somatic missense A783T A783T L 0.345 http://mutationassessor.org?cm=var&var=10,12199705,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DHTK1_HUMAN&rb=774&re=919&var=A783T http://mutationassessor.org/pdb.php?prot=DHTK1_HUMAN&from=774&to=919&var=A783T -RADIL 55698 broad.mit.edu 36.1 7 4809833 4809833 + missense SNP T C T TCGA-06-0137 TCGA-06-0137-10A-01W-0224-08 C T T C C C U Valid Somatic missense missense missense -RADIL 55698 broad.mit.edu 36.1 7 4828640 4828640 + nonsense SNP C C T TCGA-06-0157 TCGA-06-0157-10A-01W-0254-08 C C T C C C U Valid Somatic nonsense nonsense nonsense -EXOC1 55763 hgsc.bcm.edu 36 4 56465332 56465332 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense R867C R867C M 1.55 http://mutationassessor.org?cm=var&var=4,56465332,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EXOC1_HUMAN&rb=170&re=871&var=R867C -SAC 55811 broad.mit.edu 36.1 1 166068972 166068972 + missense SNP G A G TCGA-06-0157 TCGA-06-0157-10A-01W-0254-08 G G A G G G U Valid Somatic missense A1157V A1157V M 1.04 http://mutationassessor.org?cm=var&var=1,166068972,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ADCYA_HUMAN&rb=1021&re=1220&var=A1157V -SAC 55811 broad.mit.edu 36.1 1 166073110 166073110 + splice SNP C C T TCGA-12-0616 TCGA-12-0616-10A-01W-0323-08 C C C T C C U Valid Somatic splice splice splice -SAC 55811 broad.mit.edu 36.1 1 166073110 166073110 + splice SNP C T T TCGA-12-0616 TCGA-12-0616-10A-01W-0323-08 C C C T C C U Valid Somatic splice splice splice -CAND1 55832 broad.mit.edu 36.1 12 65991847 65991847 + splice SNP G A G TCGA-02-0070 TCGA-02-0070-10A-01W-0318-08 nt nt G A G G U Valid Somatic splice splice splice -ANKMY2 57037 hgsc.bcm.edu 36 7 16615863 16615863 + missense SNP T T C novel unknown TCGA-08-0345 TCGA-08-0345-11A-03W T T C T T T Unknown Valid Somatic missense I267V I267V L 0.145 http://mutationassessor.org/?cm=msa&ty=f&p=ANKY2_HUMAN&rb=112&re=311&var=I267V -PAK7 57144 hgsc.bcm.edu 36 20 9494784 9494784 + missense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense P413L P413L L 0.695 http://mutationassessor.org?cm=var&var=20,9494784,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PAK7_HUMAN&rb=98&re=416&var=P413L -PAK7 57144 hgsc.bcm.edu 36 20 9491631 9491631 + missense SNP T T C novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W T T C T T T Unknown Valid Somatic missense D508G D508G L 0.085 http://mutationassessor.org/?cm=msa&ty=f&p=PAK7_HUMAN&rb=450&re=700&var=D508G http://mutationassessor.org/pdb.php?prot=PAK7_HUMAN&from=450&to=700&var=D508G -ADAMTSL3 57188 hgsc.bcm.edu 36 15 82430313 82430313 + missense SNP G G A rs2277848 byCluster;byFrequency;byHapMap TCGA-02-0048 TCGA-02-0048-10A-01W G G A G G G Unknown Valid Somatic missense R855H R855H L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=ATL3_HUMAN&rb=824&re=880&var=R855H -ADAMTSL3 57188 hgsc.bcm.edu 36 15 82481336 82481336 + missense SNP G G A novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W G G A G G G Unknown Valid Somatic missense missense missense -ADAMTSL3 57188 hgsc.bcm.edu 36 15 82233332 82233332 + nonsense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic nonsense W81* W81* -EP400 57634 hgsc.bcm.edu 36 12 131076211 131076211 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense M1677I M1677I L 0.805 http://mutationassessor.org?cm=var&var=12,131076211,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EP400_HUMAN&rb=1454&re=1739&var=M1677I -EP400 57634 hgsc.bcm.edu 36 12 131094732 131094732 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense E2206K E2206K L 0.35 http://mutationassessor.org/?cm=msa&ty=f&p=EP400_HUMAN&rb=2201&re=2400&var=E2206K -EP400 57634 hgsc.bcm.edu 36 12 131012246 131012246 + nonsense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic nonsense Q377* Q377* -LRRC4C 57689 hgsc.bcm.edu 36 11 40092970 40092970 + missense SNP G G C novel unknown TCGA-02-0116 TCGA-02-0116-10A-01W G G C G G G Unknown Valid Somatic missense D483E D483E -KIAA1632 57724 hgsc.bcm.edu 36 18 41700876 41700876 + missense SNP C C G novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C G C C Unknown Valid Somatic missense S2169T S2169T M 1.09 http://mutationassessor.org?cm=var&var=18,41700876,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=K1632_HUMAN&rb=2001&re=2200&var=S2169T -MARK4 57787 hgsc.bcm.edu 36 19 50454106 50454106 + missense SNP G G A novel unknown TCGA-02-0015 TCGA-02-0015-10A-01W G G A G G G Unknown Valid Somatic missense G24D G24D L 0.63 http://mutationassessor.org?cm=var&var=19,50454106,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MARK4_HUMAN&rb=1&re=58&var=G24D -MARK4 57787 hgsc.bcm.edu 36 19 50482763 50482763 + splice SNP G A A novel unknown TCGA-06-0147 TCGA-06-0147-10A-01W G G A G G G Unknown Valid Somatic splice splice splice -DMRT3 58524 broad.mit.edu 36.1 9 980868 980868 + missense SNP C C T TCGA-08-0353 TCGA-08-0353-11A-01W-0318-08 C C C T C C U Valid Somatic missense R428C R428C M 1.245 http://mutationassessor.org?cm=var&var=9,980868,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DMRT3_HUMAN&rb=287&re=472&var=R428C -RINT1 60561 hgsc.bcm.edu 36 7 104994978 104994978 + missense SNP C C T novel Unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense P788L P788L L 0.43 http://mutationassessor.org/?cm=msa&ty=f&p=RINT1_HUMAN&rb=220&re=792&var=P788L -PAPPA2 60676 hgsc.bcm.edu 36 1 174925941 174925941 + missense SNP C C T novel Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense T728I T728I L 0.91 http://mutationassessor.org?cm=var&var=1,174925941,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PAPP2_HUMAN&rb=669&re=831&var=T728I http://mutationassessor.org/pdb.php?prot=PAPP2_HUMAN&from=669&to=831&var=T728I -PAPPA2 60676 hgsc.bcm.edu 36 1 174925941 174925941 + missense SNP C C T novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense T728I T728I L 0.91 http://mutationassessor.org?cm=var&var=1,174925941,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PAPP2_HUMAN&rb=669&re=831&var=T728I http://mutationassessor.org/pdb.php?prot=PAPP2_HUMAN&from=669&to=831&var=T728I -PAPPA2 60676 hgsc.bcm.edu 36 1 174830630 174830630 + missense SNP C C A novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W C C A C C C Unknown Valid Somatic missense L423M L423M L 0.475 http://mutationassessor.org/?cm=msa&ty=f&p=PAPP2_HUMAN&rb=261&re=449&var=L423M -PAPPA2 60676 hgsc.bcm.edu 36 1 174934927 174934927 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense H939Y H939Y L 0.285 http://mutationassessor.org/?cm=msa&ty=f&p=PAPP2_HUMAN&rb=832&re=1031&var=H939Y -PAPPA2 60676 hgsc.bcm.edu 36 1 174792832 174792832 + missense SNP G G A novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G A G G G Unknown Valid Somatic missense A251T A251T http://mutationassessor.org/?cm=msa&ty=f&p=PAPP2_HUMAN&rb=201&re=260&var=A251T -C10orf54 64115 hgsc.bcm.edu 36 10 73181455 73181455 + missense SNP C C T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W C C C T C C Unknown Valid Somatic missense G292R G292R L 0.805 http://mutationassessor.org?cm=var&var=10,73181455,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GI24_HUMAN&rb=232&re=310&var=G292R -C6orf60 79632 broad.mit.edu 36.1 6 119337318 119337318 + missense SNP C A C TCGA-02-0104 TCGA-02-0104-10A-01W-0318-08 C C C A C C U Valid Somatic missense K963N K963N M 1.04 http://mutationassessor.org?cm=var&var=6,119337318,C,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=F184A_HUMAN&rb=801&re=1000&var=K963N -C6orf60 79632 broad.mit.edu 36.1 6 119343120 119343120 + missense SNP C C G TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 C C G C C C U Valid Somatic missense R728P R728P L 0.88 http://mutationassessor.org?cm=var&var=6,119343120,C,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=F184A_HUMAN&rb=601&re=800&var=R728P -PIP5K2C 79837 hgsc.bcm.edu 36 12 56280885 56280885 + missense SNP G G A novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W G G A G G G Unknown Valid Somatic missense D280N D280N H 3.025 http://mutationassessor.org?cm=var&var=12,56280885,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PI42C_HUMAN&rb=124&re=420&var=D280N http://mutationassessor.org/pdb.php?prot=PI42C_HUMAN&from=124&to=420&var=D280N -FBXL18 80028 hgsc.bcm.edu 36 7 5507507 5507507 + missense SNP G G A novel unknown TCGA-02-0115 TCGA-02-0115-10A-01W G G A G G G Unknown Valid Somatic missense L307F L307F L 0.975 http://mutationassessor.org?cm=var&var=7,5507507,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FXL18_HUMAN&rb=201&re=400&var=L307F -FBXL18 80028 hgsc.bcm.edu 36 7 5507188 5507188 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense R413H R413H L 0.55 http://mutationassessor.org?cm=var&var=7,5507188,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=FXL18_HUMAN&rb=275&re=474&var=R413H -TRPM3 80036 hgsc.bcm.edu 36 9 72588890 72588890 + missense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense R392W R392W M 1.77 http://mutationassessor.org?cm=var&var=9,72588890,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TRPM3_HUMAN&rb=201&re=400&var=R392W -ATHL1 80162 hgsc.bcm.edu 36 11 284679 284679 + missense SNP G G T novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W G G G T G G Unknown Valid Somatic missense S715I S715I N 0 http://mutationassessor.org/?cm=msa&ty=f&p=ATHL1_HUMAN&rb=610&re=737&var=S715I -TAS1R1 80835 broad.mit.edu 36.1 1 6559159 6559159 + missense SNP C C T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 C C C T C C U Valid Somatic missense A453V A453V L 0.565 http://mutationassessor.org?cm=var&var=1,6559159,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=TS1R1_HUMAN&rb=74&re=457&var=A453V http://mutationassessor.org/pdb.php?prot=TS1R1_HUMAN&from=74&to=457&var=A453V -DOCK8 81704 broad.mit.edu 36.1 9 276581 276581 + missense SNP G A G TCGA-06-0145 TCGA-06-0145-10A-01W-0224-08 G G A G G G U Valid Somatic missense V93M V93M M 1.485 http://mutationassessor.org?cm=var&var=9,276581,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DOCK8_HUMAN&rb=69&re=164&var=V93M -DOCK8 81704 broad.mit.edu 36.1 9 369836 369836 + missense SNP G G T TCGA-02-0026 TCGA-02-0026-10A-01W-0318-08 G G G T G G U Valid Somatic missense D836Y D836Y M 1.255 http://mutationassessor.org?cm=var&var=9,369836,G,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DOCK8_HUMAN&rb=765&re=964&var=D836Y -INHBE 83729 broad.mit.edu 36.1 12 56136494 56136494 + missense SNP C C T TCGA-02-0014 TCGA-02-0014-10A-01W-0189-08 C C C T C C U Valid Somatic missense P217S P217S L 0.74 http://mutationassessor.org?cm=var&var=12,56136494,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=INHBE_HUMAN&rb=16&re=222&var=P217S -GARNL3 84253 broad.mit.edu 36.1 9 129135128 129135128 + missense SNP G A G TCGA-06-0190 TCGA-06-0190-10B-01W-0254-08 G G G A G G U Valid Somatic missense G226R G226R H 2.175 http://mutationassessor.org?cm=var&var=9,129135128,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=GARL3_HUMAN&rb=220&re=407&var=G226R http://mutationassessor.org/pdb.php?prot=GARL3_HUMAN&from=220&to=407&var=G226R -MYLK2 85366 broad.mit.edu 36.1 20 29871752 29871752 + missense SNP G A G TCGA-02-0043 TCGA-02-0043-10A-01W-0189-08 G G A G G G U Valid Somatic missense S72N S72N L 0.695 http://mutationassessor.org?cm=var&var=20,29871752,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MYLK2_HUMAN&rb=1&re=200&var=S72N -RHPN2 85415 hgsc.bcm.edu 36 19 38185136 38185136 + missense SNP T T C novel unknown TCGA-02-0075 TCGA-02-0075-10A-01W T T C T T T Unknown Valid Somatic missense Y321C Y321C H 2.38 http://mutationassessor.org?cm=var&var=19,38185136,T,C&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RHPN2_HUMAN&rb=111&re=517&var=Y321C http://mutationassessor.org/pdb.php?prot=RHPN2_HUMAN&from=111&to=517&var=Y321C -RHPN2 85415 hgsc.bcm.edu 36 19 38190786 38190786 + missense SNP G G A novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W G G A G G G Unknown Valid Somatic missense A245V A245V M 1.605 http://mutationassessor.org?cm=var&var=19,38190786,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RHPN2_HUMAN&rb=111&re=517&var=A245V http://mutationassessor.org/pdb.php?prot=RHPN2_HUMAN&from=111&to=517&var=A245V -RHPN2 85415 hgsc.bcm.edu 36 19 38185028 38185028 + missense SNP T T A novel unknown TCGA-02-0071 TCGA-02-0071-10A-01W T T A T T T Unknown Valid Somatic missense H357L H357L M 1.225 http://mutationassessor.org?cm=var&var=19,38185028,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RHPN2_HUMAN&rb=111&re=517&var=H357L http://mutationassessor.org/pdb.php?prot=RHPN2_HUMAN&from=111&to=517&var=H357L -RHPN2 85415 hgsc.bcm.edu 36 19 38185041 38185041 + missense SNP C C T novel unknown TCGA-02-0071 TCGA-02-0071-10A-01W C C C T C C Unknown Valid Somatic missense A353T A353T L 0.09 http://mutationassessor.org/?cm=msa&ty=f&p=RHPN2_HUMAN&rb=111&re=517&var=A353T http://mutationassessor.org/pdb.php?prot=RHPN2_HUMAN&from=111&to=517&var=A353T -RHPN2 85415 hgsc.bcm.edu 36 19 38185041 38185041 + missense SNP C C T novel unknown TCGA-02-0074 TCGA-02-0074-10A-01W C C C T C C Unknown Valid Somatic missense A353T A353T L 0.09 http://mutationassessor.org/?cm=msa&ty=f&p=RHPN2_HUMAN&rb=111&re=517&var=A353T http://mutationassessor.org/pdb.php?prot=RHPN2_HUMAN&from=111&to=517&var=A353T -HELB 92797 broad.mit.edu 36.1 12 64990195 64990195 + missense SNP C T T TCGA-08-0245 TCGA-08-0245-11A-01W-0318-08 C C C T C C U Valid Somatic missense P407L P407L L 0.345 http://mutationassessor.org/?cm=msa&ty=f&p=HELB_HUMAN&rb=261&re=460&var=P407L -SFT2D1 113402 hgsc.bcm.edu 36 6 166659636 166659636 + missense SNP T C C rs11551053 unknown TCGA-06-0178 TCGA-06-0178-10B-01W T T C T T T Unknown Valid Somatic missense I109V I109V N -0.39 http://mutationassessor.org/?cm=msa&ty=f&p=SFT2A_HUMAN&rb=42&re=156&var=I109V -CSMD3 114788 broad.mit.edu 36.1 8 113325934 113325934 + missense SNP C C T TCGA-06-0219 TCGA-06-0219-10A-01W-0255-08 C C T C C C U Valid Somatic missense V3386I V3386I N -0.005 http://mutationassessor.org?cm=var&var=8,113325934,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CSMD3_HUMAN&rb=3374&re=3429&var=V3386I http://mutationassessor.org/pdb.php?prot=CSMD3_HUMAN&from=3374&to=3429&var=V3386I -CENTG1 116986 hgsc.bcm.edu 36 12 56408033 56408033 + missense SNP C C T novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W C C C T C C Unknown Valid Somatic missense S907N S907N M 1.03 http://mutationassessor.org/?cm=msa&ty=f&p=AGAP2_HUMAN&rb=677&re=909&var=S907N -CENTG1 116986 hgsc.bcm.edu 36 12 56407992 56407992 + missense SNP C C T novel unknown TCGA-02-0014 TCGA-02-0014-10A-01W C C C T C C Unknown Valid Somatic missense V921I V921I N -0.04 http://mutationassessor.org/?cm=msa&ty=f&p=AGAP2_HUMAN&rb=880&re=960&var=V921I -OR5P2 120065 broad.mit.edu 36.1 11 7774741 7774741 + missense SNP C C T TCGA-06-0238 TCGA-06-0238-10A-01W-0323-08 C C C T C C U Valid Somatic missense V109I V109I N -0.075 http://mutationassessor.org/?cm=msa&ty=f&p=OR5P2_HUMAN&rb=37&re=286&var=V109I -PLD4 122618 hgsc.bcm.edu 36 14 104470242 104470242 + missense SNP G G A novel Unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic missense V473M V473M L 0.495 http://mutationassessor.org?cm=var&var=14,104470242,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PLD4_HUMAN&rb=405&re=506&var=V473M -PLD4 122618 hgsc.bcm.edu 36 14 104470242 104470242 + missense SNP G G A novel unknown TCGA-02-0043 TCGA-02-0043-10A-01W G G A G G G Unknown Valid Somatic missense V473M V473M L 0.495 http://mutationassessor.org?cm=var&var=14,104470242,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PLD4_HUMAN&rb=405&re=506&var=V473M -ADSSL1 122622 hgsc.bcm.edu 36 14 104275781 104275781 + missense SNP C C T novel unknown TCGA-02-0114 TCGA-02-0114-10A-01W C C C T C C Unknown Valid Somatic missense P107S P107S M 1.185 http://mutationassessor.org?cm=var&var=14,104275781,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PURA1_HUMAN&rb=33&re=455&var=P107S http://mutationassessor.org/pdb.php?prot=PURA1_HUMAN&from=33&to=455&var=P107S -MAGEC3 139081 hgsc.bcm.edu 36 X 140796995 140796995 + missense SNP C C T novel Unknown TCGA-02-0021 TCGA-02-0021-10A-01W C C C T C C Unknown Valid Somatic missense T219M T219M L 0.67 http://mutationassessor.org?cm=var&var=X,140796995,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MAGC3_HUMAN&rb=191&re=306&var=T219M http://mutationassessor.org/pdb.php?prot=MAGC3_HUMAN&from=191&to=306&var=T219M -MAGEC3 139081 hgsc.bcm.edu 36 X 140796995 140796995 + missense SNP C C T novel unknown TCGA-02-0021 TCGA-02-0021-10A-01W C C C T C C Unknown Valid Somatic missense T219M T219M L 0.67 http://mutationassessor.org?cm=var&var=X,140796995,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=MAGC3_HUMAN&rb=191&re=306&var=T219M http://mutationassessor.org/pdb.php?prot=MAGC3_HUMAN&from=191&to=306&var=T219M -RNF38 152006 broad.mit.edu 36.1 9 36346448 36346448 + missense SNP T A T TCGA-06-0138 TCGA-06-0138-10C-01W-0254-08 T T T A T T U Valid Somatic missense Q254L Q254L M 1.325 http://mutationassessor.org?cm=var&var=9,36346448,T,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=RNF38_HUMAN&rb=201&re=400&var=Q254L -ABCA13 154664 hgsc.bcm.edu 36 7 48282838 48282838 + missense SNP C C A novel unknown TCGA-02-0060 TCGA-02-0060-10A-01W C C A C C C Unknown Valid Somatic missense missense missense -ABCA13 154664 hgsc.bcm.edu 36 7 48288980 48288980 + missense SNP C C T novel unknown TCGA-02-0083 TCGA-02-0083-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -ABCA13 154664 hgsc.bcm.edu 36 7 48465295 48465295 + missense SNP C C T novel Unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -ABCA13 154664 hgsc.bcm.edu 36 7 48465295 48465295 + missense SNP C C T novel unknown TCGA-02-0028 TCGA-02-0028-10A-01W C C C T C C Unknown Valid Somatic missense missense missense -C9orf66 157983 hgsc.bcm.edu 36 9 204916 204916 + missense SNP G G A novel unknown TCGA-06-0173 TCGA-06-0173-10B-01W G G A G G G Unknown Valid Somatic missense missense missense -KCNV2 169522 hgsc.bcm.edu 36 9 2708940 2708940 + missense SNP G G A novel unknown TCGA-06-0176 TCGA-06-0176-10A-01W G G A G G G Unknown Valid Somatic missense G401S G401S H 2.045 http://mutationassessor.org?cm=var&var=9,2708940,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KCNV2_HUMAN&rb=304&re=492&var=G401S http://mutationassessor.org/pdb.php?prot=KCNV2_HUMAN&from=304&to=492&var=G401S -DTX3 196403 broad.mit.edu 36.1 12 56288721 56288721 + missense SNP G A A TCGA-02-0107 TCGA-02-0107-10A-01W-0206-08 G G A G G G U Valid Somatic missense G301E G301E H 2.38 http://mutationassessor.org?cm=var&var=12,56288721,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DTX3_HUMAN&rb=201&re=347&var=G301E -DTX3 196403 broad.mit.edu 36.1 12 56288721 56288721 + missense SNP G A G TCGA-02-0107 TCGA-02-0107-10A-01W-0206-08 G G A G G G U Valid Somatic missense G301E G301E H 2.38 http://mutationassessor.org?cm=var&var=12,56288721,G,A&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=DTX3_HUMAN&rb=201&re=347&var=G301E -C9orf72 203228 broad.mit.edu 36.1 9 27552474 27552474 + missense SNP C C T TCGA-02-0015 TCGA-02-0015-10A-01W-0318-08 C C C T C C U Valid Somatic missense G169S G169S L 0.695 http://mutationassessor.org?cm=var&var=9,27552474,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=CI072_HUMAN&rb=1&re=200&var=G169S -KIF6 221458 hgsc.bcm.edu 36 6 39662130 39662130 + missense SNP C C T novel unknown TCGA-02-0038 TCGA-02-0038-10A-01W C C C T C C Unknown Valid Somatic missense R292H R292H M 1.21 http://mutationassessor.org?cm=var&var=6,39662130,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=KIF6_HUMAN&rb=12&re=345&var=R292H http://mutationassessor.org/pdb.php?prot=KIF6_HUMAN&from=12&to=345&var=R292H -MMD2 221938 broad.mit.edu 36.1 7 4922229 4922229 + missense SNP C C T TCGA-08-0246 TCGA-08-0246-11A-01W-0318-08 C C C T C C U Valid Somatic missense E100K E100K M 1.085 http://mutationassessor.org?cm=var&var=7,4922229,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=PAQRA_HUMAN&rb=30&re=251&var=E100K -ASPM 259266 broad.mit.edu 36.1 1 195340175 195340175 + missense SNP A A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 A A A G A A U Valid Somatic missense V1610A V1610A L 0.95 http://mutationassessor.org?cm=var&var=1,195340175,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ASPM_HUMAN&rb=1582&re=1613&var=V1610A -ASPM 259266 broad.mit.edu 36.1 1 195365053 195365053 + missense SNP A A G TCGA-02-0010 TCGA-02-0010-10A-01W-0189-08 A A G A A A U Valid Somatic missense S883P S883P L 0.81 http://mutationassessor.org?cm=var&var=1,195365053,A,G&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=ASPM_HUMAN&rb=681&re=959&var=S883P -KSR2 283455 broad.mit.edu 36.1 12 116501335 116501335 + missense SNP G A G TCGA-06-0648 TCGA-06-0648-10A-01W-0323-08 G G G A G G U Valid Somatic missense L433F L433F L 0.535 http://mutationassessor.org/?cm=msa&ty=f&p=KSR2_HUMAN&rb=401&re=600&var=L433F http://mutationassessor.org/pdb.php?prot=KSR2_HUMAN&from=401&to=600&var=L433F -ZNF493 284443 hgsc.bcm.edu 36 19 21379790 21379790 + missense SNP A A T novel unknown TCGA-02-0010 TCGA-02-0010-10A-01W A A A T A A Unknown Valid Somatic missense missense missense -EPHA6 285220 broad.mit.edu 36.1 3 98189215 98189215 + missense SNP C C T TCGA-06-0137 TCGA-06-0137-10A-01W-0224-08 C C C T C C U Valid Somatic missense R173C R173C M 1.695 http://mutationassessor.org?cm=var&var=3,98189215,C,T&fts=all http://mutationassessor.org/?cm=msa&ty=f&p=EPHA6_HUMAN&rb=33&re=206&var=R173C http://mutationassessor.org/pdb.php?prot=EPHA6_HUMAN&from=33&to=206&var=R173C -SPRED3 399473 broad.mit.edu 36.1 19 43574459 43574459 + missense SNP G A G TCGA-08-0349 TCGA-08-0349-11A-02W-0323-08 G G G A G G U Valid Somatic missense missense missense -PALM2-AKAP2 445815 broad.mit.edu 36.1 9 111938487 111938487 + missense SNP C A C TCGA-06-0210 TCGA-06-0210-10A-01W-0255-08 C C C A C C U Valid Somatic missense missense missense -PALM2-AKAP2 445815 broad.mit.edu 36.1 9 111939141 111939141 + missense SNP G A G TCGA-02-0025 TCGA-02-0025-10A-01W-0318-08 G G G A G G U Valid Somatic missense missense missense diff --git a/core/src/main/resources/sample_data/gbm/gbm.txt b/core/src/main/resources/sample_data/gbm/gbm.txt deleted file mode 100644 index f08a676d595..00000000000 --- a/core/src/main/resources/sample_data/gbm/gbm.txt +++ /dev/null @@ -1,4 +0,0 @@ -type_of_cancer: GBM -cancer_study_identifier: tcga_gbm -name: Glioblastoma (TCGA) -description: The Cancer Genome Atlas (TCGA) Glioblastoma project. 206 primary glioblastoma samples.
    Nature 2008. Raw data via the TCGA Data Portal. diff --git a/core/src/main/resources/sample_data/gbm/meta_CNA_consensus.txt b/core/src/main/resources/sample_data/gbm/meta_CNA_consensus.txt deleted file mode 100644 index 5852d693d28..00000000000 --- a/core/src/main/resources/sample_data/gbm/meta_CNA_consensus.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: tcga_gbm -stable_id: gbm_cna_consensus -profile_name: Putative copy-number alterations (GBM Pathways) -profile_description: Putative copy-number calls for all genes in the hand-curated pathway of genes implicated in glioblastoma (206 cases). These calls were used for the pathway analysis in the initial TCGA manuscript, and they are the consensus of a combination of different platforms (Agilent, Affymetrix SNP6, Illumina) and methods (RAE, GISTIC, GTS). Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -genetic_alteration_type: COPY_NUMBER_ALTERATION -target_line: consensus diff --git a/core/src/main/resources/sample_data/gbm/meta_mutations_MAF.txt b/core/src/main/resources/sample_data/gbm/meta_mutations_MAF.txt deleted file mode 100644 index 9781380ad29..00000000000 --- a/core/src/main/resources/sample_data/gbm/meta_mutations_MAF.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: tcga_gbm -stable_id: gbm_mutations -profile_name: Mutations -profile_description: Mutation data for ~1200 sequenced genes (Phases I/II of the TCGA glioblastoma project). -genetic_alteration_type: MUTATION_EXTENDED -target_line: mutation diff --git a/core/src/main/resources/sample_data/genes/human_genes.txt b/core/src/main/resources/sample_data/genes/human_genes.txt deleted file mode 100644 index 5ceb1080757..00000000000 --- a/core/src/main/resources/sample_data/genes/human_genes.txt +++ /dev/null @@ -1,43825 +0,0 @@ -9606 1 A1BG - A1B|ABG|GAB|HYST2477 HGNC:5|MIM:138670|Ensembl:ENSG00000121410|HPRD:00726 19 19q13.4 alpha-1-B glycoprotein protein-coding A1BG alpha-1-B glycoprotein O alpha-1B-glycoprotein 20121230 -9606 2 A2M - A2MD|CPAMD5|FWP007|S863-7 HGNC:7|MIM:103950|Ensembl:ENSG00000175899|HPRD:00072|Vega:OTTHUMG00000150267 12 12p13.31 alpha-2-macroglobulin protein-coding A2M alpha-2-macroglobulin O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 5|alpha-2-M 20121230 -9606 3 A2MP1 - A2MP HGNC:8 12 12p13.31 alpha-2-macroglobulin pseudogene 1 pseudo A2MP1 alpha-2-macroglobulin pseudogene 1 O - 20121230 -9606 9 NAT1 - AAC1|MNAT|NAT-1|NATI HGNC:7645|MIM:108345|Ensembl:ENSG00000171428|HPRD:00149|Vega:OTTHUMG00000097001 8 8p22 N-acetyltransferase 1 (arylamine N-acetyltransferase) protein-coding NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase) O N-acetyltransferase type 1|arylamide acetylase 1|arylamine N-acetyltransferase 1|monomorphic arylamine N-acetyltransferase 20121230 -9606 10 NAT2 - AAC2|NAT-2|PNAT HGNC:7646|MIM:612182|Ensembl:ENSG00000156006|HPRD:02000|Vega:OTTHUMG00000130826 8 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) protein-coding NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) O N-acetyltransferase type 2|arylamide acetylase 2|arylamine N-acetyltransferase 2 20121230 -9606 11 AACP - NATP HGNC:15 8 8p22 arylamide acetylase pseudogene pseudo AACP arylamide acetylase pseudogene O - 20121230 -9606 12 SERPINA3 GIG24 AACT|ACT|GIG25 HGNC:16|MIM:107280|Ensembl:ENSG00000196136|HPRD:00120|Vega:OTTHUMG00000029851 14 14q32.1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 protein-coding SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 O alpha-1-antichymotrypsin|cell growth-inhibiting gene 24/25 protein|growth-inhibiting protein 24|growth-inhibiting protein 25|serine (or cysteine) proteinase inhibitor, clade A, member 3|serpin A3 20121230 -9606 13 AADAC - CES5A1|DAC HGNC:17|MIM:600338|Ensembl:ENSG00000114771|HPRD:02640|Vega:OTTHUMG00000159876 3 3q25.1 arylacetamide deacetylase protein-coding AADAC arylacetamide deacetylase O arylacetamide deacetylase (esterase) 20121230 -9606 14 AAMP - - HGNC:18|MIM:603488|Ensembl:ENSG00000127837|HPRD:04600|Vega:OTTHUMG00000155202 2 2q35 angio-associated, migratory cell protein protein-coding AAMP angio-associated, migratory cell protein O angio-associated migratory cell protein 20121230 -9606 15 AANAT - DSPS|SNAT HGNC:19|MIM:600950|Ensembl:ENSG00000129673|HPRD:02974|Vega:OTTHUMG00000180179 17 17q25 aralkylamine N-acetyltransferase protein-coding AANAT aralkylamine N-acetyltransferase O arylalkylamine N-acetyltransferase|serotonin N-acetyltransferase|serotonin acetylase 20121230 -9606 16 AARS - CMT2N HGNC:20|MIM:601065|Ensembl:ENSG00000090861|HPRD:03042|Vega:OTTHUMG00000177042 16 16q22 alanyl-tRNA synthetase protein-coding AARS alanyl-tRNA synthetase O alaRS|alanine tRNA ligase 1, cytoplasmic|alanine--tRNA ligase, cytoplasmic|alanyl-tRNA synthetase, cytoplasmic|renal carcinoma antigen NY-REN-42 20121230 -9606 17 AAVS1 - AAV HGNC:22|MIM:102699 19 19q13|19q13-qter adeno-associated virus integration site 1 other AAVS1 adeno-associated virus integration site 1 O - 20111027 -9606 18 ABAT hCG_1984265 GABA-AT|GABAT|NPD009 HGNC:23|MIM:137150|Ensembl:ENSG00000183044|HPRD:00661|Vega:OTTHUMG00000048201 16 16p13.2 4-aminobutyrate aminotransferase protein-coding ABAT 4-aminobutyrate aminotransferase O (S)-3-amino-2-methylpropionate transaminase|4-aminobutyrate aminotransferase, mitochondrial|4-aminobutyrate transaminase|GABA aminotransferase|GABA transaminase|GABA transferase|gamma-amino-N-butyrate transaminase 20121230 -9606 19 ABCA1 - ABC-1|ABC1|CERP|HDLDT1|TGD HGNC:29|MIM:600046|Ensembl:ENSG00000165029|HPRD:02501|Vega:OTTHUMG00000020417 9 9q31.1 ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 O ATP-binding cassette sub-family A member 1|ATP-binding cassette transporter A1|cholesterol efflux regulatory protein|membrane-bound 20121230 -9606 20 ABCA2 RP11-229P13.8 ABC2 HGNC:32|MIM:600047|Ensembl:ENSG00000107331|HPRD:08967|Vega:OTTHUMG00000020958 9 9q34 ATP-binding cassette, sub-family A (ABC1), member 2 protein-coding ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 O ATP-binding cassette 2|ATP-binding cassette sub-family A member 2|ATP-binding cassette transporter 2|ATP-binding cassette, sub-family A, member 2 20121230 -9606 21 ABCA3 - ABC-C|ABC3|EST111653|LBM180|SMDP3 HGNC:33|MIM:601615|Ensembl:ENSG00000167972|HPRD:03369|Vega:OTTHUMG00000128845 16 16p13.3 ATP-binding cassette, sub-family A (ABC1), member 3 protein-coding ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3 O ABC transporter 3|ABC-C transporter|ATP-binding cassette sub-family A member 3|ATP-binding cassette transporter 3 20121230 -9606 22 ABCB7 - ABC7|ASAT|Atm1p|EST140535 HGNC:48|MIM:300135|Ensembl:ENSG00000131269|HPRD:02137|Vega:OTTHUMG00000021862 X Xq13.3 ATP-binding cassette, sub-family B (MDR/TAP), member 7 protein-coding ABCB7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 O ABC transporter 7 protein|ATP-binding cassette sub-family B member 7, mitochondrial|ATP-binding cassette transporter 7 20121230 -9606 23 ABCF1 DADB-129D20.7 ABC27|ABC50 HGNC:70|MIM:603429|Ensembl:ENSG00000204574|HPRD:09139|Vega:OTTHUMG00000031094 6 6p21.33 ATP-binding cassette, sub-family F (GCN20), member 1 protein-coding ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 O ATP-binding cassette 50 (TNF-alpha stimulated)|ATP-binding cassette sub-family F member 1|TNF-alpha-stimulated ABC protein|TNFalpha-inducible ATP-binding protein 20121230 -9606 24 ABCA4 - ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 HGNC:34|MIM:601691|Ensembl:ENSG00000198691|HPRD:03408|Vega:OTTHUMG00000010622 1 1p22 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 O ATP binding cassette transporter|ATP-binding cassette sub-family A member 4|ATP-binding cassette transporter, retinal-specific|ATP-binding transporter, retina-specific|RIM ABC transporter|RIM protein|photoreceptor rim protein|retina-specific ABC transporter|retinal-specific ATP-binding cassette transporter|stargardt disease protein 20121230 -9606 25 ABL1 RP11-83J21.1 ABL|JTK7|bcr/abl|c-ABL|p150|v-abl HGNC:76|MIM:189980|Ensembl:ENSG00000097007|HPRD:01809|Vega:OTTHUMG00000020813 9 9q34.1 c-abl oncogene 1, non-receptor tyrosine kinase protein-coding ABL1 c-abl oncogene 1, non-receptor tyrosine kinase O Abelson tyrosine-protein kinase 1|bcr/c-abl oncogene protein|c-abl oncogene 1, receptor tyrosine kinase|proto-oncogene c-Abl|proto-oncogene tyrosine-protein kinase ABL1|tyrosine-protein kinase ABL1|v-abl Abelson murine leukemia viral oncogene homolog 1 20121230 -9606 26 ABP1 - ABP|AOC1|DAO|DAO1|KAO HGNC:80|MIM:104610|Ensembl:ENSG00000002726|HPRD:00088|Vega:OTTHUMG00000158306 7 7q36.1 amiloride binding protein 1 (amine oxidase (copper-containing)) protein-coding ABP1 amiloride binding protein 1 (amine oxidase (copper-containing)) O amiloride-binding protein-1|amiloride-sensitive amine oxidase|amiloride-sensitive amine oxidase [copper-containing]|diamine oxidase|histaminase|kidney amine oxidase 20121230 -9606 27 ABL2 RP11-177A2.3 ABLL|ARG HGNC:77|MIM:164690|Ensembl:ENSG00000143322|HPRD:01259|Vega:OTTHUMG00000035199 1 1q25.2 v-abl Abelson murine leukemia viral oncogene homolog 2 protein-coding ABL2 v-abl Abelson murine leukemia viral oncogene homolog 2 O Abelson tyrosine-protein kinase 2|abelson-related gene protein|tyrosine-protein kinase ARG 20121230 -9606 28 ABO - A3GALNT|A3GALT1|GTB|NAGAT HGNC:79|MIM:110300|HPRD:05821 9 9q34.2 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) protein-coding ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) O ABO A3 transferase|ABO glycosyltransferase|ABO weak transfer|B(A) alpha-1,3-galactosyltransferase|fucosylglycoprotein 3-alpha-galactosyltransferase|fucosylglycoprotein alpha-N-acetylgalactosaminyltransferase|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase|glycoprotein-fucosylgalactoside alpha-galactosyltransferase|histo-blood group A transferase|histo-blood group A2 transferase|histo-blood group ABO system transferase|histo-blood group B transferase 20121230 -9606 29 ABR - MDB HGNC:81|MIM:600365|Ensembl:ENSG00000159842|HPRD:02649|Vega:OTTHUMG00000090313 17 17p13.3 active BCR-related protein-coding ABR active BCR-related O active breakpoint cluster region-related protein 20121230 -9606 30 ACAA1 - ACAA|PTHIO|THIO HGNC:82|MIM:604054|Ensembl:ENSG00000060971|HPRD:06815|Vega:OTTHUMG00000131087 3 3p22.2 acetyl-CoA acyltransferase 1 protein-coding ACAA1 acetyl-CoA acyltransferase 1 O 3-ketoacyl-CoA thiolase, peroxisomal|acetyl-Coenzyme A acyltransferase 1|beta-ketothiolase|peroxisomal 3-oxoacyl-CoA thiolase|peroxisomal 3-oxoacyl-Coenzyme A thiolase 20121230 -9606 31 ACACA - ACAC|ACACAD|ACC|ACC1|ACCA HGNC:84|MIM:200350|Ensembl:ENSG00000132142|HPRD:01938|Vega:OTTHUMG00000133064 17 17q21 acetyl-CoA carboxylase alpha protein-coding ACACA acetyl-CoA carboxylase alpha O ACC-alpha|acetyl-CoA carboxylase 1|acetyl-Coenzyme A carboxylase alpha 20121230 -9606 32 ACACB - ACC2|ACCB|HACC275 HGNC:85|MIM:601557|Ensembl:ENSG00000076555|HPRD:07044|Vega:OTTHUMG00000169250 12 12q24.11 acetyl-CoA carboxylase beta protein-coding ACACB acetyl-CoA carboxylase beta O ACC-beta|acetyl-CoA carboxylase 2|acetyl-Coenzyme A carboxylase beta 20121230 -9606 33 ACADL - ACAD4|LCAD HGNC:88|MIM:609576|Ensembl:ENSG00000115361|HPRD:01939|Vega:OTTHUMG00000132989 2 2q34 acyl-CoA dehydrogenase, long chain protein-coding ACADL acyl-CoA dehydrogenase, long chain O acyl-Coenzyme A dehydrogenase, long chain|long-chain specific acyl-CoA dehydrogenase, mitochondrial 20121230 -9606 34 ACADM RP4-682C21.1 ACAD1|MCAD|MCADH HGNC:89|MIM:607008|Ensembl:ENSG00000117054|HPRD:08447|Vega:OTTHUMG00000009784 1 1p31 acyl-CoA dehydrogenase, C-4 to C-12 straight chain protein-coding ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain O acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain|medium-chain specific acyl-CoA dehydrogenase, mitochondrial 20121230 -9606 35 ACADS - ACAD3|SCAD HGNC:90|MIM:606885|Ensembl:ENSG00000122971|HPRD:06053|Vega:OTTHUMG00000169203 12 12q24.31 acyl-CoA dehydrogenase, C-2 to C-3 short chain protein-coding ACADS acyl-CoA dehydrogenase, C-2 to C-3 short chain O acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain|butyryl-CoA dehydrogenase|mitochondrial short-chain specific acyl-CoA dehydrogenase|short-chain acyl-CoA dehydrogenase|short-chain specific acyl-CoA dehydrogenase, mitochondrial|unsaturated acyl-CoA reductase 20121230 -9606 36 ACADSB RP11-162A23.1 2-MEBCAD|ACAD7|SBCAD HGNC:91|MIM:600301|Ensembl:ENSG00000196177|HPRD:02626|Vega:OTTHUMG00000019200 10 10q26.13 acyl-CoA dehydrogenase, short/branched chain protein-coding ACADSB acyl-CoA dehydrogenase, short/branched chain O 2-methyl branched chain acyl-CoA dehydrogenase|2-methylbutyryl-coenzyme A dehydrogenase|acyl-Coenzyme A dehydrogenase, short/branched chain|short/branched chain specific acyl-CoA dehydrogenase, mitochondrial 20121230 -9606 37 ACADVL - ACAD6|LCACD|VLCAD HGNC:92|MIM:609575|Ensembl:ENSG00000072778|HPRD:01940|Vega:OTTHUMG00000102157 17 17p13.1 acyl-CoA dehydrogenase, very long chain protein-coding ACADVL acyl-CoA dehydrogenase, very long chain O acyl-Coenzyme A dehydrogenase, very long chain|very long-chain specific acyl-CoA dehydrogenase, mitochondrial 20121230 -9606 38 ACAT1 - ACAT|MAT|T2|THIL HGNC:93|MIM:607809|Ensembl:ENSG00000075239|HPRD:01946|Vega:OTTHUMG00000166381 11 11q22.3 acetyl-CoA acetyltransferase 1 protein-coding ACAT1 acetyl-CoA acetyltransferase 1 O acetoacetyl Coenzyme A thiolase|acetoacetyl-CoA thiolase|acetyl-CoA acetyltransferase, mitochondrial|acetyl-Coenzyme A acetyltransferase 1|mitochondrial acetoacetyl-CoA thiolase 20121230 -9606 39 ACAT2 - - HGNC:94|MIM:100678|Ensembl:ENSG00000120437|HPRD:00006|Vega:OTTHUMG00000015935 6 6q25.3 acetyl-CoA acetyltransferase 2 protein-coding ACAT2 acetyl-CoA acetyltransferase 2 O acetoacetyl Coenzyme A thiolase|acetyl-CoA acetyltransferase, cytosolic|acetyl-CoA transferase-like protein|cytosolic acetoacetyl-CoA thiolase 20121230 -9606 40 ASIC2 - ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 HGNC:99|MIM:601784|Ensembl:ENSG00000108684|HPRD:03471|Vega:OTTHUMG00000132885 17 17q12 acid-sensing (proton-gated) ion channel 2 protein-coding ASIC2 acid-sensing (proton-gated) ion channel 2 O acid-sensing ion channel 2|amiloride-sensitive cation channel 1, neuronal|brain sodium channel 1|mammalian degenerin homolog|neuronal amiloride-sensitive cation channel 1 20121230 -9606 41 ASIC1 - ACCN2|ASIC|BNaC2 HGNC:100|MIM:602866|Ensembl:ENSG00000110881|HPRD:04182|Vega:OTTHUMG00000169812 12 12q12 acid-sensing (proton-gated) ion channel 1 protein-coding ASIC1 acid-sensing (proton-gated) ion channel 1 O Cation channel, amiloride-sensitive, neuronal, 2|acid-sensing ion channel 1|acid-sensing ion channel 1a protein|amiloride-sensitive cation channel 2, neuronal|brain sodium channel 2 20121230 -9606 43 ACHE - ACEE|ARACHE|N-ACHE|YT HGNC:108|MIM:100740|Ensembl:ENSG00000087085|HPRD:00010|Vega:OTTHUMG00000157033 7 7q22 acetylcholinesterase protein-coding ACHE acetylcholinesterase O Yt blood group|apoptosis-related acetylcholinesterase 20121230 -9606 46 ACLS - - HGNC:114|MIM:200990 12 12p13.3-p11.2 acrocallosal syndrome unknown ACLS acrocallosal syndrome O - 20111022 -9606 47 ACLY - ACL|ATPCL|CLATP HGNC:115|MIM:108728|Ensembl:ENSG00000131473|HPRD:00155|Vega:OTTHUMG00000133507 17 17q21.2 ATP citrate lyase protein-coding ACLY ATP citrate lyase O ATP citrate synthase|ATP-citrate (pro-S-)-lyase|ATP-citrate synthase|citrate cleavage enzyme 20121230 -9606 48 ACO1 RP11-334P12.1 ACONS|IREB1|IREBP|IREBP1|IRP1 HGNC:117|MIM:100880|Ensembl:ENSG00000122729|HPRD:00013|Vega:OTTHUMG00000019740 9 9p21.1 aconitase 1, soluble protein-coding ACO1 aconitase 1, soluble O IRE-BP 1|aconitate hydratase|citrate hydro-lyase|cytoplasmic aconitate hydratase|ferritin repressor protein|iron regulatory protein 1|iron-responsive element binding protein 1|iron-responsive element-binding protein 1 20121230 -9606 49 ACR - - HGNC:126|MIM:102480|Ensembl:ENSG00000100312|HPRD:06342|Vega:OTTHUMG00000150155 22 22q13.33 acrosin protein-coding ACR acrosin O acrosin light and heavy chain prepropeptide|preproacrosin|proacrosin 20121230 -9606 50 ACO2 RP3-347H13.8 ACONM|ICRD HGNC:118|MIM:100850|Ensembl:ENSG00000100412|HPRD:00012|Vega:OTTHUMG00000030544 22 22q13.2 aconitase 2, mitochondrial protein-coding ACO2 aconitase 2, mitochondrial O aconitate hydratase, mitochondrial|citrate hydro-lyase 20121230 -9606 51 ACOX1 - ACOX|PALMCOX|SCOX HGNC:119|MIM:609751|Ensembl:ENSG00000161533|HPRD:02030|Vega:OTTHUMG00000180027 17 17q25.1 acyl-CoA oxidase 1, palmitoyl protein-coding ACOX1 acyl-CoA oxidase 1, palmitoyl O AOX|acyl-CoA oxidase, straight-chain|acyl-Coenzyme A oxidase 1, palmitoyl|palmitoyl-CoA oxidase|peroxisomal acyl-coenzyme A oxidase 1|peroxisomal fatty acyl-CoA oxidase|straight-chain acyl-CoA oxidase 20121230 -9606 52 ACP1 - HAAP HGNC:122|MIM:171500|Ensembl:ENSG00000143727|HPRD:08881|Vega:OTTHUMG00000086933 2 2p25 acid phosphatase 1, soluble protein-coding ACP1 acid phosphatase 1, soluble O LMW-PTP|LMW-PTPase|acid phosphatase of erythrocyte|adipocyte acid phosphatase|cytoplasmic phosphotyrosyl protein phosphatase|low molecular weight cytosolic acid phosphatase|low molecular weight phosphotyrosine protein phosphatase|protein tyrosine phosphatase|red cell acid phosphatase 1 20121230 -9606 53 ACP2 - - HGNC:123|MIM:171650|Ensembl:ENSG00000134575|HPRD:01375|Vega:OTTHUMG00000166949 11 11p11.2|11p12-p11 acid phosphatase 2, lysosomal protein-coding ACP2 acid phosphatase 2, lysosomal O LAP|lysosomal acid phosphatase 20121230 -9606 54 ACP5 - SPENCDI|TRAP HGNC:124|MIM:171640|Ensembl:ENSG00000102575|HPRD:01374|Vega:OTTHUMG00000182036 19 19p13.2 acid phosphatase 5, tartrate resistant protein-coding ACP5 acid phosphatase 5, tartrate resistant O TrATPase|tartrate-resistant acid ATPase|tartrate-resistant acid phosphatase type 5 20121230 -9606 55 ACPP - 5'-NT|ACP-3|ACP3|PAP HGNC:125|MIM:171790|Ensembl:ENSG00000014257|HPRD:01378|Vega:OTTHUMG00000159650 3 3q22.1 acid phosphatase, prostate protein-coding ACPP acid phosphatase, prostate O 5'-nucleotidase|TMPase|ecto-5'-nucleotidase|prostatic acid phosphatase|prostatic acid phosphotase|thiamine monophosphatase 20121230 -9606 56 ACRV1 - D11S4365|SP-10|SPACA2 HGNC:127|MIM:102525|Ensembl:ENSG00000134940|HPRD:00014|Vega:OTTHUMG00000165854 11 11q24.2 acrosomal vesicle protein 1 protein-coding ACRV1 acrosomal vesicle protein 1 O acrosomal protein SP-10|sperm protein 10 20121230 -9606 58 ACTA1 RP5-1068B5.2 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3 HGNC:129|MIM:102610|Ensembl:ENSG00000143632|HPRD:00030|Vega:OTTHUMG00000038006 1 1q42.13 actin, alpha 1, skeletal muscle protein-coding ACTA1 actin, alpha 1, skeletal muscle O actin, alpha skeletal muscle|nemaline myopathy type 3 20121230 -9606 59 ACTA2 GIG46 AAT6|ACTSA|MYMY5 HGNC:130|MIM:102620|Ensembl:ENSG00000107796|HPRD:00031|Vega:OTTHUMG00000018700 10 10q23.3 actin, alpha 2, smooth muscle, aorta protein-coding ACTA2 actin, alpha 2, smooth muscle, aorta O actin, aortic smooth muscle|alpha-cardiac actin|cell growth-inhibiting gene 46 protein 20121230 -9606 60 ACTB - BRWS1|PS1TP5BP1 HGNC:132|MIM:102630|Ensembl:ENSG00000075624|HPRD:00032|Vega:OTTHUMG00000023268 7 7p22 actin, beta protein-coding ACTB actin, beta O PS1TP5-binding protein 1|actin, cytoplasmic 1|beta cytoskeletal actin 20121230 -9606 62 ACTBP2 - - HGNC:135 5 5q14.1 actin, beta pseudogene 2 pseudo ACTBP2 actin, beta pseudogene 2 O - 20121230 -9606 63 ACTBP3 - - HGNC:136 18 18q21.33 actin, beta pseudogene 3 pseudo ACTBP3 actin, beta pseudogene 3 O - 20121230 -9606 64 ACTBP4 - - HGNC:137 5 5q31.1 actin, beta pseudogene 4 pseudo ACTBP4 actin, beta pseudogene 4 O - 20121230 -9606 66 ACTBP6 - H8-PSI-BETA-AC3 HGNC:139 8 8q21.2 actin, beta pseudogene 6 pseudo ACTBP6 actin, beta pseudogene 6 O - 20121230 -9606 67 ACTBP7 - - HGNC:140 15 15q15.3 actin, beta pseudogene 7 pseudo ACTBP7 actin, beta pseudogene 7 O - 20121230 -9606 68 ACTBP8 - ACTBP2 HGNC:141 6 6q15 actin, beta pseudogene 8 pseudo ACTBP8 actin, beta pseudogene 8 O - 20121230 -9606 69 ACTBP9 - - HGNC:142 18 18q21.33 actin, beta pseudogene 9 pseudo ACTBP9 actin, beta pseudogene 9 O - 20121230 -9606 70 ACTC1 - ACTC|ASD5|CMD1R|CMH11|LVNC4 HGNC:143|MIM:102540|Ensembl:ENSG00000159251|HPRD:00015|Vega:OTTHUMG00000129675 15 15q14 actin, alpha, cardiac muscle 1 protein-coding ACTC1 actin, alpha, cardiac muscle 1 O actin, alpha cardiac muscle 1 20121230 -9606 71 ACTG1 - ACT|ACTG|BRWS2|DFNA20|DFNA26 HGNC:144|MIM:102560|Ensembl:ENSG00000184009|HPRD:00017|Vega:OTTHUMG00000177955 17 17q25 actin, gamma 1 protein-coding ACTG1 actin, gamma 1 O actin, cytoplasmic 2|cytoskeletal gamma-actin 20121230 -9606 72 ACTG2 - ACT|ACTA3|ACTE|ACTL3|ACTSG HGNC:145|MIM:102545|Ensembl:ENSG00000163017|HPRD:00016|Vega:OTTHUMG00000129813 2 2p13.1 actin, gamma 2, smooth muscle, enteric protein-coding ACTG2 actin, gamma 2, smooth muscle, enteric O actin, gamma-enteric smooth muscle|actin-like protein|alpha-actin 3|alpha-actin-3|gamma-2-actin|smooth muscle gamma actin|smooth muscle gamma-actin 20121230 -9606 73 ACTG1P1 - ACT1GP1|ACTGP1|HY-psi-gamma-AC6 HGNC:146 3 3q23 actin, gamma 1 pseudogene 1 pseudo ACTG1P1 actin, gamma 1 pseudogene 1 O - 20121230 -9606 74 ACTG1P2 - ACTGP2|ACTL2 HGNC:147 Y Yq11 actin, gamma 1 pseudogene 2 pseudo ACTG1P2 actin, gamma 1 pseudogene 2 O - 20121230 -9606 75 ACTG1P3 - ACTGP3|dJ545L17.4 HGNC:148 20 20p13 actin, gamma 1 pseudogene 3 pseudo ACTG1P3 actin, gamma 1 pseudogene 3 O - 20121230 -9606 78 ACTG1P6 - ACTGP6 HGNC:151 1 1p21 actin, gamma 1 pseudogene 6 pseudo ACTG1P6 actin, gamma 1 pseudogene 6 O - 20091219 -9606 79 ACTG1P7 - ACTGP7 HGNC:152 1 1p21 actin, gamma 1 pseudogene 7 pseudo ACTG1P7 actin, gamma 1 pseudogene 7 O - 20091219 -9606 80 ACTG1P8 - ACTGP8 HGNC:153 1 1p21 actin, gamma 1 pseudogene 8 pseudo ACTG1P8 actin, gamma 1 pseudogene 8 O - 20091219 -9606 81 ACTN4 - ACTININ-4|FSGS|FSGS1 HGNC:166|MIM:604638|Ensembl:ENSG00000130402|HPRD:05222|Vega:OTTHUMG00000137382 19 19q13 actinin, alpha 4 protein-coding ACTN4 actinin, alpha 4 O F-actin cross-linking protein|actinin alpha4 isoform|alpha-actinin-4|focal segmental glomerulosclerosis 1|non-muscle alpha-actinin 4 20121230 -9606 82 ACTG1P9 - ACTGP9 HGNC:154 6 6p12.3 actin, gamma 1 pseudogene 9 pseudo ACTG1P9 actin, gamma 1 pseudogene 9 O - 20121230 -9606 83 ACTG1P10 - ACTGP10|ACTL1|ACTP1 HGNC:155 X Xp11.22 actin, gamma 1 pseudogene 10 pseudo ACTG1P10 actin, gamma 1 pseudogene 10 O - 20121230 -9606 84 ACTL4 - - HGNC:158 3 3pter-q21 actin-like 4 protein-coding ACTL4 actin-like 4 O - 20080828 -9606 86 ACTL6A - ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K HGNC:24124|MIM:604958|Ensembl:ENSG00000136518|HPRD:05389|Vega:OTTHUMG00000157782 3 3q26.33 actin-like 6A protein-coding ACTL6A actin-like 6A O 53 kDa BRG1-associated factor A|BAF complex 53 kDa subunit|BAF53|BRG1-associated factor 53A|INO80 complex subunit K|actin-like protein 6A|actin-related protein 4|actin-related protein Baf53a|arpNbeta|hArpN beta 20121230 -9606 87 ACTN1 - - HGNC:163|MIM:102575|Ensembl:ENSG00000072110|HPRD:00020|Vega:OTTHUMG00000171386 14 14q24|14q22-q24 actinin, alpha 1 protein-coding ACTN1 actinin, alpha 1 O F-actin cross-linking protein|actinin 1 smooth muscle|alpha-actinin cytoskeletal isoform|alpha-actinin-1|non-muscle alpha-actinin-1 20121230 -9606 88 ACTN2 - CMD1AA HGNC:164|MIM:102573|Ensembl:ENSG00000077522|HPRD:00019|Vega:OTTHUMG00000040059 1 1q42-q43 actinin, alpha 2 protein-coding ACTN2 actinin, alpha 2 O F-actin cross-linking protein|alpha-actinin skeletal muscle|alpha-actinin-2 20121230 -9606 89 ACTN3 - - HGNC:165|MIM:102574|HPRD:02148 11 11q13.1 actinin, alpha 3 protein-coding ACTN3 actinin, alpha 3 O F-actin cross-linking protein|alpha-actinin skeletal muscle|alpha-actinin-3 20121230 -9606 90 ACVR1 - ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI HGNC:171|MIM:102576|Ensembl:ENSG00000115170|HPRD:00021|Vega:OTTHUMG00000131967 2 2q23-q24 activin A receptor, type I protein-coding ACVR1 activin A receptor, type I O TGF-B superfamily receptor type I|activin A receptor, type II-like kinase 2|activin receptor type I|activin receptor type-1|activin receptor-like kinase 2|hydroxyalkyl-protein kinase|serine/threonine-protein kinase receptor R1 20121230 -9606 91 ACVR1B - ACTRIB|ACVRLK4|ALK4|SKR2 HGNC:172|MIM:601300|Ensembl:ENSG00000135503|HPRD:03193|Vega:OTTHUMG00000167920 12 12q13 activin A receptor, type IB protein-coding ACVR1B activin A receptor, type IB O activin A receptor, type II-like kinase 4|activin receptor type-1B|activin receptor-like kinase 4|serine/threonine-protein kinase receptor R2 20121230 -9606 92 ACVR2A - ACTRII|ACVR2 HGNC:173|MIM:102581|Ensembl:ENSG00000121989|HPRD:00025|Vega:OTTHUMG00000150603 2 2q22.3 activin A receptor, type IIA protein-coding ACVR2A activin A receptor, type IIA O activin receptor type-2A 20121230 -9606 93 ACVR2B - ACTRIIB|ActR-IIB|HTX4 HGNC:174|MIM:602730|Ensembl:ENSG00000114739|HPRD:04106|Vega:OTTHUMG00000131291 3 3p22 activin A receptor, type IIB protein-coding ACVR2B activin A receptor, type IIB O activin receptor type-2B 20121230 -9606 94 ACVRL1 - ACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-I HGNC:175|MIM:601284|Ensembl:ENSG00000139567|HPRD:03181|Vega:OTTHUMG00000169507 12 12q13.13 activin A receptor type II-like 1 protein-coding ACVRL1 activin A receptor type II-like 1 O TGF-B superfamily receptor type I|activin A receptor, type II-like kinase 1|serine/threonine-protein kinase receptor R3 20121230 -9606 95 ACY1 - ACY-1|ACY1D HGNC:177|MIM:104620|Ensembl:ENSG00000114786|Ensembl:ENSG00000243989|HPRD:00092|Vega:OTTHUMG00000157815|Vega:OTTHUMG00000166447 3 3p21.1 aminoacylase 1 protein-coding ACY1 aminoacylase 1 O N-acyl-L-amino-acid amidohydrolase|acylase|aminoacylase-1 20121230 -9606 97 ACYP1 - ACYPE HGNC:179|MIM:600875|Ensembl:ENSG00000119640|HPRD:02928|Vega:OTTHUMG00000171767 14 14q24.3 acylphosphatase 1, erythrocyte (common) type protein-coding ACYP1 acylphosphatase 1, erythrocyte (common) type O acylphosphatase, erythrocyte isozyme|acylphosphatase, organ-common type isozyme|acylphosphatase-1|acylphosphate phosphohydrolase 1 20121230 -9606 98 ACYP2 - ACYM|ACYP HGNC:180|MIM:102595|Ensembl:ENSG00000170634|HPRD:00028|Vega:OTTHUMG00000129287 2 2p16.2 acylphosphatase 2, muscle type protein-coding ACYP2 acylphosphatase 2, muscle type O acylphosphatase, muscle type isozyme|acylphosphatase-2|acylphosphate phosphohydrolase 2 20121230 -9606 100 ADA - - HGNC:186|MIM:608958|Ensembl:ENSG00000196839|HPRD:00038|Vega:OTTHUMG00000033081 20 20q13.12 adenosine deaminase protein-coding ADA adenosine deaminase O adenosine aminohydrolase 20121230 -9606 101 ADAM8 - CD156|MS2 HGNC:215|MIM:602267|Ensembl:ENSG00000151651|HPRD:03777|Vega:OTTHUMG00000019309 10 10q26.3 ADAM metallopeptidase domain 8 protein-coding ADAM8 ADAM metallopeptidase domain 8 O a disintegrin and metalloproteinase domain 8|cell surface antigen MS2|disintegrin and metalloproteinase domain-containing protein 8|human leukocyte differentiation antigen 20121230 -9606 102 ADAM10 - AD10|CD156c|HsT18717|MADM|kuz HGNC:188|MIM:602192|Ensembl:ENSG00000137845|HPRD:03723|Vega:OTTHUMG00000132633 15 15q22 ADAM metallopeptidase domain 10 protein-coding ADAM10 ADAM metallopeptidase domain 10 O ADAM 10|CDw156|a disintegrin and metalloprotease domain 10|a disintegrin and metalloproteinase domain 10|disintegrin and metalloproteinase domain-containing protein 10|kuzbanian protein homolog|mammalian disintegrin-metalloprotease 20121230 -9606 103 ADAR RP11-61L14.5 ADAR1|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 HGNC:225|MIM:146920|Ensembl:ENSG00000160710|HPRD:07528|Vega:OTTHUMG00000037261 1 1q21.3 adenosine deaminase, RNA-specific protein-coding ADAR adenosine deaminase, RNA-specific O 136 kDa double-stranded RNA-binding protein|adenosine deaminase acting on RNA 1-A|double-stranded RNA-specific adenosine deaminase|dsRNA adenosine deaminase|interferon-induced protein 4|interferon-inducible protein 4 20121230 -9606 104 ADARB1 - ADAR2|DRABA2|DRADA2|RED1 HGNC:226|MIM:601218|Ensembl:ENSG00000197381|HPRD:06777|Vega:OTTHUMG00000090295 21 21q22.3 adenosine deaminase, RNA-specific, B1 protein-coding ADARB1 adenosine deaminase, RNA-specific, B1 O RED1 homolog|RNA editase|RNA editing deaminase 1|RNA-editing deaminase 1|RNA-editing enzyme 1|adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)|adenosine deaminase, RNA-specific, B1 (homolog of rat RED1)|double-stranded RNA-specific editase 1|dsRNA adenosine deaminase DRADA2 20121230 -9606 105 ADARB2 RP11-29A19.1 ADAR3|RED2 HGNC:227|MIM:602065|Ensembl:ENSG00000185736|HPRD:09070|Vega:OTTHUMG00000017543 10 10p15.3 adenosine deaminase, RNA-specific, B2 protein-coding ADARB2 adenosine deaminase, RNA-specific, B2 O RED2 homolog|RNA-dependent adenosine deaminase 3|RNA-editing deaminase 2|RNA-editing enzyme 2|adenosine deaminase, RNA-specific, B2 (RED1 homolog rat)|adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)|double-stranded RNA-specific editase B2|dsRNA adenosine deaminase B2|homolog of rat BLUE 20121230 -9606 106 ADCP1 - - HGNC:229 6 - adenosine deaminase complexing protein 1 unknown ADCP1 adenosine deaminase complexing protein 1 O - 20100127 -9606 107 ADCY1 - AC1 HGNC:232|MIM:103072|Ensembl:ENSG00000164742|HPRD:00053|Vega:OTTHUMG00000155420 7 7p13-p12 adenylate cyclase 1 (brain) protein-coding ADCY1 adenylate cyclase 1 (brain) O 3',5'-cyclic AMP synthetase|ATP pyrophosphate-lyase 1|Ca(2+)/calmodulin-activated adenylyl cyclase|adenyl cyclase|adenylate cyclase type 1|adenylate cyclase type I|adenylyl cyclase 1 20121230 -9606 108 ADCY2 - AC2|HBAC2 HGNC:233|MIM:103071|Ensembl:ENSG00000078295|HPRD:00052|Vega:OTTHUMG00000090476 5 5p15.3 adenylate cyclase 2 (brain) protein-coding ADCY2 adenylate cyclase 2 (brain) O 3',5'-cyclic AMP synthetase|ATP pyrophosphate-lyase 2|adenylate cyclase II|adenylate cyclase type 2|adenylate cyclase type II|adenylyl cyclase 2|type II adenylate cyclase 20121230 -9606 109 ADCY3 - AC3 HGNC:234|MIM:600291|Ensembl:ENSG00000138031|HPRD:02620|Vega:OTTHUMG00000094765 2 2p23.3 adenylate cyclase 3 protein-coding ADCY3 adenylate cyclase 3 O AC-III|ATP pyrophosphate-lyase 3|adenylate cyclase type 3|adenylate cyclase type III|adenylate cyclase, olfactive type|adenylyl cyclase 3|adenylyl cyclase, type III 20121230 -9606 111 ADCY5 - AC5|FDFM HGNC:236|MIM:600293|Ensembl:ENSG00000173175|HPRD:08973|Vega:OTTHUMG00000159517 3 3q21.1 adenylate cyclase 5 protein-coding ADCY5 adenylate cyclase 5 O ATP pyrophosphate-lyase 5|adenylate cyclase type 5|adenylate cyclase type V|adenylyl cyclase 5 20121230 -9606 112 ADCY6 - AC6 HGNC:237|MIM:600294|Ensembl:ENSG00000174233|HPRD:02621|Vega:OTTHUMG00000170396 12 12q12-q13 adenylate cyclase 6 protein-coding ADCY6 adenylate cyclase 6 O ATP pyrophosphate-lyase 6|adenylate cyclase type 6|adenylate cyclase type VI|adenylyl cyclase 6|ca(2+)-inhibitable adenylyl cyclase 20121230 -9606 113 ADCY7 - AC7 HGNC:238|MIM:600385|Ensembl:ENSG00000121281|HPRD:02663|Vega:OTTHUMG00000133172 16 16q12.1 adenylate cyclase 7 protein-coding ADCY7 adenylate cyclase 7 O ATP pyrophosphate-lyase 7|adenylate cyclase type 7|adenylate cyclase type VII|adenylyl cyclase 7 20121230 -9606 114 ADCY8 - AC8|ADCY3|HBAC1 HGNC:239|MIM:103070|Ensembl:ENSG00000155897|HPRD:00051|Vega:OTTHUMG00000164756 8 8q24 adenylate cyclase 8 (brain) protein-coding ADCY8 adenylate cyclase 8 (brain) O ATP pyrophosphate-lyase 8|adenylate cyclase type 8|adenylate cyclase type VIII|adenylyl cyclase 8|adenylyl cyclase-8, brain|ca(2+)/calmodulin-activated adenylyl cyclase 20121230 -9606 115 ADCY9 - AC9 HGNC:240|MIM:603302|Ensembl:ENSG00000162104|HPRD:04489|Vega:OTTHUMG00000177612 16 16p13.3 adenylate cyclase 9 protein-coding ADCY9 adenylate cyclase 9 O ATP pyrophosphate-lyase 9|adenylate cyclase type 9|adenylate cyclase type IX|adenylyl cyclase 9|type IX ATP pyrophosphate-lyase 20121230 -9606 116 ADCYAP1 - PACAP HGNC:241|MIM:102980|Ensembl:ENSG00000141433|HPRD:02369|Vega:OTTHUMG00000131479 18 18p11 adenylate cyclase activating polypeptide 1 (pituitary) protein-coding ADCYAP1 adenylate cyclase activating polypeptide 1 (pituitary) O pituitary adenylate cyclase-activating polypeptide 20121230 -9606 117 ADCYAP1R1 - PAC1|PAC1R|PACAPR|PACAPRI HGNC:242|MIM:102981|Ensembl:ENSG00000078549|HPRD:00045|Vega:OTTHUMG00000023884 7 7p14 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I protein-coding ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I O PACAP receptor 1|PACAP type I receptor|PACAP-R1|pituitary adenylate cyclase activating polypeptide 1 receptor type I Hiphop|pituitary adenylate cyclase-activating polypeptide type I receptor 20121230 -9606 118 ADD1 RP11-520M5.1 ADDA HGNC:243|MIM:102680|Ensembl:ENSG00000087274|HPRD:00036|Vega:OTTHUMG00000122080 4 4p16.3 adducin 1 (alpha) protein-coding ADD1 adducin 1 (alpha) O alpha-adducin|erythrocyte adducin alpha subunit 20121230 -9606 119 ADD2 - ADDB HGNC:244|MIM:102681|Ensembl:ENSG00000075340|HPRD:00037|Vega:OTTHUMG00000129710 2 2p13.3 adducin 2 (beta) protein-coding ADD2 adducin 2 (beta) O beta-adducin|erythrocyte adducin subunit beta 20121230 -9606 120 ADD3 RP11-252O7.3 ADDL HGNC:245|MIM:601568|Ensembl:ENSG00000148700|HPRD:03339|Vega:OTTHUMG00000019032 10 10q25.2 adducin 3 (gamma) protein-coding ADD3 adducin 3 (gamma) O adducin-like protein 70|gamma-adducin 20121230 -9606 122 ADFN - ALDS HGNC:247|MIM:300700 X Xq25-q26|Xq26.3-q27.1 albinism-deafness syndrome unknown ADFN albinism-deafness syndrome O - 20120622 -9606 123 PLIN2 RP11-151J10.1 ADFP|ADRP HGNC:248|MIM:103195|Ensembl:ENSG00000147872|HPRD:00057|Vega:OTTHUMG00000019624 9 9p22.1 perilipin 2 protein-coding PLIN2 perilipin 2 O adipophilin|adipose differentiation-related protein|perilipin-2 20121230 -9606 124 ADH1A - ADH1 HGNC:249|MIM:103700|Ensembl:ENSG00000187758|HPRD:00063|Vega:OTTHUMG00000131026 4 4q23 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide O ADH, alpha subunit|alcohol dehydrogenase 1 (class I), alpha polypeptide|alcohol dehydrogenase 1A|alcohol dehydrogenase subunit alpha|aldehyde reductase 20121230 -9606 125 ADH1B - ADH2 HGNC:250|MIM:103720|Ensembl:ENSG00000196616|HPRD:00065|Vega:OTTHUMG00000161413 4 4q23 alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide O ADH, beta subunit|alcohol dehydrogenase 1B|alcohol dehydrogenase 2 (class I), beta polypeptide|alcohol dehydrogenase subunit beta|aldehyde reductase 20121230 -9606 126 ADH1C - ADH3 HGNC:251|MIM:103730|Ensembl:ENSG00000248144|HPRD:00066|Vega:OTTHUMG00000161422 4 4q23 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide O ADH, gamma subunit|alcohol dehydrogenase 1C|alcohol dehydrogenase 3 (class I), gamma polypeptide|alcohol dehydrogenase subunit gamma|aldehyde reductase 20121230 -9606 127 ADH4 - ADH-2 HGNC:252|MIM:103740|Ensembl:ENSG00000198099|HPRD:00068|Vega:OTTHUMG00000161227 4 4q22 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide O alcohol dehydrogenase 4|alcohol dehydrogenase class II pi chain|aldehyde reductase 20121230 -9606 128 ADH5 - ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR HGNC:253|MIM:103710|Ensembl:ENSG00000197894|HPRD:00064|Vega:OTTHUMG00000161230 4 4q23 alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide O S-(hydroxymethyl)glutathione dehydrogenase|alcohol dehydrogenase (class III), chi polypeptide|alcohol dehydrogenase class chi chain|alcohol dehydrogenase class-3|alcohol dehydrogenase class-III|formaldehyde dehydrogenase|glutathione-dependent formaldehyde dehydrogenase 20121230 -9606 130 ADH6 - ADH-5 HGNC:255|MIM:103735|Ensembl:ENSG00000172955|HPRD:00067|Vega:OTTHUMG00000131024 4 4q23 alcohol dehydrogenase 6 (class V) protein-coding ADH6 alcohol dehydrogenase 6 (class V) O alcohol dehydrogenase 6|aldehyde reductase 20121230 -9606 131 ADH7 - ADH4 HGNC:256|MIM:600086|Ensembl:ENSG00000196344|HPRD:02515|Vega:OTTHUMG00000159318 4 4q23-q24 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide O alcohol dehydrogenase VII|alcohol dehydrogenase class 4 mu/sigma chain|alcohol dehydrogenase class IV mu/sigma chain|alcohol dehydrogenase-7|class IV sigma-1 alcohol dehydrogenase|class IV sigmasigma alcohol dehydrogenase|gastric alcohol dehydrogenase|retinol dehydrogenase 20121230 -9606 132 ADK - AK HGNC:257|MIM:102750|Ensembl:ENSG00000156110|HPRD:00039|Vega:OTTHUMG00000018506 10 10q22|10q11-q24 adenosine kinase protein-coding ADK adenosine kinase O adenosine 5'-phosphotransferase 20121230 -9606 133 ADM - AM HGNC:259|MIM:103275|Ensembl:ENSG00000148926|HPRD:00061|Vega:OTTHUMG00000165907 11 11p15.4 adrenomedullin protein-coding ADM adrenomedullin O preproadrenomedullin 20121230 -9606 134 ADORA1 - RDC7 HGNC:262|MIM:102775|Ensembl:ENSG00000163485|HPRD:00042|Vega:OTTHUMG00000042125 1 1q32.1 adenosine A1 receptor protein-coding ADORA1 adenosine A1 receptor O adenosine receptor A1 20121230 -9606 135 ADORA2A - ADORA2|RDC8|hA2aR HGNC:263|MIM:102776|Ensembl:ENSG00000128271|HPRD:00043|Vega:OTTHUMG00000150761 22 22q11.23 adenosine A2a receptor protein-coding ADORA2A adenosine A2a receptor O adenosine A2 receptor|adenosine receptor A2a|adenosine receptor subtype A2a 20121230 -9606 136 ADORA2B - ADORA2 HGNC:264|MIM:600446|Ensembl:ENSG00000170425|HPRD:15971|Vega:OTTHUMG00000059140 17 17p12 adenosine A2b receptor protein-coding ADORA2B adenosine A2b receptor O adenosine receptor A2b 20121230 -9606 137 ADORA2BP1 - ADORA2BP HGNC:265 1 1q32 adenosine A2b receptor pseudogene 1 pseudo ADORA2BP1 adenosine A2b receptor pseudogene 1 O - 20121230 -9606 140 ADORA3 RP11-552M11.7 A3AR|AD026|bA552M11.5 HGNC:268|MIM:600445|Ensembl:ENSG00000121933|HPRD:08984|HPRD:12424|Vega:OTTHUMG00000011957 1 1p13.2 adenosine A3 receptor protein-coding ADORA3 adenosine A3 receptor O adenosine receptor A3 20121230 -9606 141 ADPRH - ARH1 HGNC:269|MIM:603081|Ensembl:ENSG00000144843|HPRD:04359|Vega:OTTHUMG00000159420 3 3q13.31-q13.33 ADP-ribosylarginine hydrolase protein-coding ADPRH ADP-ribosylarginine hydrolase O ADP-ribose-L-arginine cleaving enzyme|[Protein ADP-ribosylarginine] hydrolase 20121230 -9606 142 PARP1 RP11-125A15.2 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 HGNC:270|MIM:173870|Ensembl:ENSG00000143799|HPRD:01435|Vega:OTTHUMG00000037556 1 1q41-q42 poly (ADP-ribose) polymerase 1 protein-coding PARP1 poly (ADP-ribose) polymerase 1 O ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)|ADP-ribosyltransferase NAD(+)|ADP-ribosyltransferase diphtheria toxin-like 1|NAD(+) ADP-ribosyltransferase 1|poly (ADP-ribose) polymerase family, member 1|poly [ADP-ribose] polymerase 1|poly(ADP-ribose) polymerase|poly(ADP-ribose) synthetase|poly(ADP-ribosyl)transferase|poly[ADP-ribose] synthase 1 20121230 -9606 143 PARP4 RP11-169O17.2 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 HGNC:271|MIM:607519|Ensembl:ENSG00000102699|HPRD:09598|Vega:OTTHUMG00000016582 13 13q11 poly (ADP-ribose) polymerase family, member 4 protein-coding PARP4 poly (ADP-ribose) polymerase family, member 4 O 193 kDa vault protein|ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1|ADP-ribosyltransferase diphtheria toxin-like 4|H5 proline-rich|I-alpha-I-related|PARP-related|PARP-related/IalphaI-related H5/proline-rich|poly [ADP-ribose] polymerase 4|poly(ADP-ribose) synthetase|poly(ADP-ribosyl)transferase-like 1|vault poly(ADP-ribose) polymerase|vault protein, 193-kDa|von Willebrand factor A domain containing 5C 20121230 -9606 144 PARP1P1 - ADPRTP1|PPOLP1 HGNC:275 13 13q34 poly (ADP-ribose) polymerase family, member 1 pseudogene 1 pseudo PARP1P1 poly (ADP-ribose) polymerase family, member 1 pseudogene 1 O - 20121230 -9606 145 PARP1P2 - ADPRTP2|PPOLP2 HGNC:276 14 14q22 poly (ADP-ribose) polymerase family, member 1 pseudogene 2 pseudo PARP1P2 poly (ADP-ribose) polymerase family, member 1 pseudogene 2 O - 20121230 -9606 146 ADRA1D - ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 HGNC:280|MIM:104219|Ensembl:ENSG00000171873|HPRD:00079|Vega:OTTHUMG00000031779 20 20p13 adrenoceptor alpha 1D protein-coding ADRA1D adrenoceptor alpha 1D O adrenergic, alpha -1D-, receptor|adrenergic, alpha-1A-, receptor|adrenergic, alpha-1D-, receptor|alpha-1A adrenergic receptor|alpha-1D adrenergic receptor|alpha-1D adrenoceptor|alpha-1D adrenoreceptor|alpha-1D-adrenergic receptor|alpha-adrenergic receptor 1a 20121230 -9606 147 ADRA1B - ADRA1|ALPHA1BAR HGNC:278|MIM:104220|Ensembl:ENSG00000170214|HPRD:00080|Vega:OTTHUMG00000130327 5 5q33.3 adrenoceptor alpha 1B protein-coding ADRA1B adrenoceptor alpha 1B O adrenergic, alpha-1B-, receptor|alpha-1B adrenergic receptor|alpha-1B adrenoceptor|alpha-1B adrenoreceptor|alpha-1B-adrenergic receptor 20121230 -9606 148 ADRA1A - ADRA1C|ADRA1L1|ALPHA1AAR HGNC:277|MIM:104221|Ensembl:ENSG00000120907|HPRD:00081|Vega:OTTHUMG00000099459 8 8p21.2 adrenoceptor alpha 1A protein-coding ADRA1A adrenoceptor alpha 1A O G protein coupled receptor|adrenergic, alpha-1A-, receptor variant 1|adrenergic, alpha-1A-, receptor variant 3|adrenergic, alpha-1A-, receptor variant 5|adrenergic, alpha-1A-, receptor variant 8|alpha-1A adrenergic receptor|alpha-1A adrenoceptor|alpha-1A adrenoreceptor|alpha-1C adrenergic receptor 20121230 -9606 150 ADRA2A - ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 HGNC:281|MIM:104210|Ensembl:ENSG00000150594|HPRD:00078|Vega:OTTHUMG00000019050 10 10q25.2 adrenoceptor alpha 2A protein-coding ADRA2A adrenoceptor alpha 2A O adrenergic, alpha-2A-, receptor|alpha-2 adrenergic receptor subtype C10|alpha-2-adrenergic receptor, platelet type|alpha-2A adrenergic receptor|alpha-2A adrenoceptor|alpha-2A adrenoreceptor|alpha-2AAR subtype C10 20121230 -9606 151 ADRA2B - ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|alpha-2BAR HGNC:282|MIM:104260|Ensembl:ENSG00000222040|HPRD:00086|Vega:OTTHUMG00000154375 2 2q11.1 adrenoceptor alpha 2B protein-coding ADRA2B adrenoceptor alpha 2B O ADRA2B adrenergic, alpha-2B-, receptor|G-protein coupled receptor|adrenergic receptor alpha 2B|adrenergic, alpha-2B-, receptor|alpha-2 adrenergic receptor subtype C2|alpha-2-adrenergic receptor-like 1|alpha-2B adrenergic receptor|alpha-2B adrenoceptor|alpha-2B adrenoreceptor 20121230 -9606 152 ADRA2C - ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR HGNC:283|MIM:104250|Ensembl:ENSG00000184160|HPRD:00085|Vega:OTTHUMG00000159830 4 4p16 adrenoceptor alpha 2C protein-coding ADRA2C adrenoceptor alpha 2C O adrenergic, alpha-2C-, receptor|alpha-2 adrenergic receptor subtype C4|alpha-2C adrenergic receptor|alpha-2C adrenoceptor|alpha-2C adrenoreceptor|alpha-2C-adrenergic receptor|alpha-2CAR|alpha2-AR-C4 20121230 -9606 153 ADRB1 - ADRB1R|B1AR|BETA1AR|RHR HGNC:285|MIM:109630|Ensembl:ENSG00000043591|HPRD:00181|Vega:OTTHUMG00000019079 10 10q25.3 adrenoceptor beta 1 protein-coding ADRB1 adrenoceptor beta 1 O adrenergic, beta-1-, receptor|beta-1 adrenergic receptor|beta-1 adrenoceptor|beta-1 adrenoreceptor 20121230 -9606 154 ADRB2 - ADRB2R|ADRBR|B2AR|BAR|BETA2AR HGNC:286|MIM:109690|Ensembl:ENSG00000169252|HPRD:00187|Vega:OTTHUMG00000129933 5 5q31-q32 adrenoceptor beta 2, surface protein-coding ADRB2 adrenoceptor beta 2, surface O adrenergic, beta-2-, receptor, surface|beta-2 adrenergic receptor|beta-2 adrenoceptor|beta-2 adrenoreceptor|catecholamine receptor 20121230 -9606 155 ADRB3 - BETA3AR HGNC:288|MIM:109691|Ensembl:ENSG00000188778|HPRD:00188|Vega:OTTHUMG00000164028 8 8p12 adrenoceptor beta 3 protein-coding ADRB3 adrenoceptor beta 3 O adrenergic, beta-3-, receptor|beta-3 adrenergic receptor|beta-3 adrenoceptor|beta-3 adrenoreceptor 20121230 -9606 156 ADRBK1 - BARK1|BETA-ARK1|GRK2 HGNC:289|MIM:109635|Ensembl:ENSG00000173020|HPRD:00182|Vega:OTTHUMG00000167104 11 11q13.1 adrenergic, beta, receptor kinase 1 protein-coding ADRBK1 adrenergic, beta, receptor kinase 1 O G-protein coupled receptor kinase 2|beta-ARK-1|beta-adrenergic receptor kinase 1 20121230 -9606 157 ADRBK2 - BARK2|GRK3 HGNC:290|MIM:109636|Ensembl:ENSG00000100077|HPRD:00183|Vega:OTTHUMG00000150280 22 22q12.1 adrenergic, beta, receptor kinase 2 protein-coding ADRBK2 adrenergic, beta, receptor kinase 2 O G-protein-coupled receptor kinase 3|beta-ARK-2|beta-adrenergic receptor kinase 2 20121230 -9606 158 ADSL RP5-1042K10.8 AMPS|ASASE|ASL HGNC:291|MIM:608222|Ensembl:ENSG00000239900|HPRD:00049|Vega:OTTHUMG00000166425 22 22q13.2 adenylosuccinate lyase protein-coding ADSL adenylosuccinate lyase O adenylosuccinase 20121230 -9606 159 ADSS RP11-518L10.4 ADEH|ADSS 2 HGNC:292|MIM:103060|Ensembl:ENSG00000035687|HPRD:00050|Vega:OTTHUMG00000040102 1 1q44 adenylosuccinate synthase protein-coding ADSS adenylosuccinate synthase O AMPSase 2|IMP--aspartate ligase 2|L-type adenylosuccinate synthetase|adenylosuccinate synthetase (Ade(-)H-complementing)|adenylosuccinate synthetase isozyme 2|adenylosuccinate synthetase, acidic isozyme|adenylosuccinate synthetase, liver isozyme 20121230 -9606 160 AP2A1 - ADTAA|AP2-ALPHA|CLAPA1 HGNC:561|MIM:601026|Ensembl:ENSG00000196961|HPRD:03016 19 19q13.33 adaptor-related protein complex 2, alpha 1 subunit protein-coding AP2A1 adaptor-related protein complex 2, alpha 1 subunit O 100 kDa coated vesicle protein A|AP-2 complex subunit alpha-1|adapter-related protein complex 2 alpha-1 subunit|adaptin, alpha A|adaptor protein complex AP-2 subunit alpha-1|alpha-adaptin A|alpha1-adaptin|clathrin assembly protein complex 2 alpha-A large chain|clathrin-associated/assembly/adaptor protein, large, alpha 1|plasma membrane adaptor HA2/AP2 adaptin alpha A subunit 20121230 -9606 161 AP2A2 - ADTAB|CLAPA2|HIP-9|HIP9|HYPJ HGNC:562|MIM:607242|Ensembl:ENSG00000183020|HPRD:06256|Vega:OTTHUMG00000165627 11 11p15.5 adaptor-related protein complex 2, alpha 2 subunit protein-coding AP2A2 adaptor-related protein complex 2, alpha 2 subunit O 100 kDa coated vesicle protein C|AP-2 complex subunit alpha-2|adaptin, alpha B|alpha-adaptin C; Huntingtin interacting protein J|alpha2-adaptin|clathrin assembly protein complex 2 alpha-C large chain|clathrin-associated/assembly/adaptor protein, large, alpha 2|huntingtin yeast partner J|huntingtin-interacting protein 9|plasma membrane adaptor HA2/AP2 adaptin alpha C subunit 20121230 -9606 162 AP1B1 - ADTB1|AP105A|BAM22|CLAPB2 HGNC:554|MIM:600157|Ensembl:ENSG00000100280|HPRD:02541|Vega:OTTHUMG00000151109 22 22q12.2 adaptor-related protein complex 1, beta 1 subunit protein-coding AP1B1 adaptor-related protein complex 1, beta 1 subunit O AP-1 complex subunit beta-1|Golgi adaptor HA1/AP1 adaptin beta subunit|adapter-related protein complex 1 subunit beta-1|adaptor protein complex AP-1 subunit beta-1|beta-1-adaptin|beta-adaptin 1|beta-prime-adaptin|beta1-adaptin|clathrin assembly protein complex 1 beta large chain|plasma membrane adaptor HA2/AP2 adaptor beta subunit 20121230 -9606 163 AP2B1 - ADTB2|AP105B|AP2-BETA|CLAPB1 HGNC:563|MIM:601025|Ensembl:ENSG00000006125|HPRD:03015|Vega:OTTHUMG00000179924 17 17q11.2-q12 adaptor-related protein complex 2, beta 1 subunit protein-coding AP2B1 adaptor-related protein complex 2, beta 1 subunit O AP-2 complex subunit beta|adapter-related protein complex 2 beta subunit|adaptin, beta 2 (beta)|adaptor protein complex AP-2 subunit beta|beta-2-adaptin|beta-adaptin|clathrin assembly protein complex 2 beta large chain|clathrin-associated/assembly/adaptor protein, large, beta 1|plasma membrane adaptor HA2/AP2 adaptin beta subunit 20121230 -9606 164 AP1G1 - ADTG|CLAPG1 HGNC:555|MIM:603533|Ensembl:ENSG00000166747|HPRD:04637|Vega:OTTHUMG00000176871 16 16q23 adaptor-related protein complex 1, gamma 1 subunit protein-coding AP1G1 adaptor-related protein complex 1, gamma 1 subunit O AP-1 complex subunit gamma-1|adapter-related protein complex 1 subunit gamma-1|adaptor protein complex AP-1 subunit gamma-1|clathrin assembly protein complex 1 gamma large chain|clathrin assembly protein complex 1 gamma-1 large chain|clathrin-associated/assembly/adaptor protein, large, gamma 1|gamma adaptin|gamma1-adaptin|golgi adaptor HA1/AP1 adaptin gamma subunit|golgi adaptor HA1/AP1 adaptin subunit gamma-1 20121230 -9606 165 AEBP1 - ACLP HGNC:303|MIM:602981|Ensembl:ENSG00000106624|HPRD:04281|Vega:OTTHUMG00000023362 7 7p13 AE binding protein 1 protein-coding AEBP1 AE binding protein 1 O AE-binding protein 1|adipocyte enhancer binding protein 1|adipocyte enhancer-binding protein 1|aortic carboxypeptidase-like protein 20121230 -9606 166 AES - AES-1|AES-2|ESP1|GRG|GRG5|TLE5 HGNC:307|MIM:600188|Ensembl:ENSG00000104964|HPRD:02556|Vega:OTTHUMG00000180567 19 19p13.3 amino-terminal enhancer of split protein-coding AES amino-terminal enhancer of split O gp130-associated protein GAM 20121230 -9606 167 CRISP1 - AEGL1|ARP|CRISP-1|HSCRISP1D|HSCRISP1G|HUMARP HGNC:304|MIM:601193|Ensembl:ENSG00000124812|HPRD:03118|Vega:OTTHUMG00000014827 6 6p21.3 cysteine-rich secretory protein 1 protein-coding CRISP1 cysteine-rich secretory protein 1 O AEG-like protein|AEG-related protein|acidic epididymal glycoprotein homolog|acidic epididymal glycoprotein-like 1|cysteine-rich secretory protein-1 delta 20121230 -9606 169 AF8T - - HGNC:309|MIM:116950 3 - AF8 temperature sensitivity complementing unknown AF8T AF8 temperature sensitivity complementing O - 20110215 -9606 170 AFA - - HGNC:310|MIM:106250 - - ankyloblepharon filiforme adnatum unknown AFA ankyloblepharon filiforme adnatum O - 20110215 -9606 171 AFD1 - AFDN HGNC:312|MIM:154400 9 9q32 acrofacial dysostosis 1, Nager type unknown AFD1 acrofacial dysostosis 1, Nager type O - 20110714 -9606 172 AFG3L1P - AFG3|AFG3L1 HGNC:314|MIM:603020|HPRD:04315 16 16q24.3 AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene pseudo AFG3L1P AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene O - 20121230 -9606 173 AFM - ALB2|ALBA|ALF HGNC:316|MIM:104145|Ensembl:ENSG00000079557|HPRD:00073|Vega:OTTHUMG00000130004 4 4q13.3 afamin protein-coding AFM afamin O alpha-Alb|alpha-albumin 20121230 -9606 174 AFP - FETA|HPAFP HGNC:317|MIM:104150|Ensembl:ENSG00000081051|HPRD:00074|Vega:OTTHUMG00000130011 4 4q13.3 alpha-fetoprotein protein-coding AFP alpha-fetoprotein O alpha-1-fetoprotein|alpha-fetoglobulin 20121230 -9606 175 AGA - AGU|ASRG|GA HGNC:318|MIM:613228|Ensembl:ENSG00000038002|HPRD:01949|Vega:OTTHUMG00000160723 4 4q34.3 aspartylglucosaminidase protein-coding AGA aspartylglucosaminidase O N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase|N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase|aspartylglucosylamine deaspartylase|glycosylasparaginase 20121230 -9606 176 ACAN - AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK HGNC:319|MIM:155760|Ensembl:ENSG00000157766|HPRD:01123|Vega:OTTHUMG00000171989 15 15q26.1 aggrecan protein-coding ACAN aggrecan O aggrecan core protein|cartilage-specific proteoglycan core protein|chondroitin sulfate proteoglycan core protein 1|large aggregating proteoglycan 20121230 -9606 177 AGER DAMA-358M23.4 RAGE HGNC:320|MIM:600214|Ensembl:ENSG00000204305|HPRD:02568|Vega:OTTHUMG00000031120 6 6p21.3 advanced glycosylation end product-specific receptor protein-coding AGER advanced glycosylation end product-specific receptor O RAGE isoform NtRAGE-delta|RAGE isoform sRAGE-delta 20121230 -9606 178 AGL - GDE HGNC:321|MIM:610860|Ensembl:ENSG00000162688|HPRD:01984|Vega:OTTHUMG00000010803 1 1p21 amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase O amylo-1, 6-glucosidase, 4-alpha-glucanotransferase|glycogen debrancher|glycogen debranching enzyme 20121230 -9606 179 AGMX2 - IMD6|XLA2 HGNC:323|MIM:300310 X Xp22 agammaglobulinemia, X-linked 2 (with growth hormone deficiency) unknown AGMX2 agammaglobulinemia, X-linked 2 (with growth hormone deficiency) O - 20120622 -9606 181 AGRP - AGRT|ART|ASIP2 HGNC:330|MIM:602311|Ensembl:ENSG00000159723|HPRD:09079|Vega:OTTHUMG00000137509 16 16q22 agouti related protein homolog (mouse) protein-coding AGRP agouti related protein homolog (mouse) O agouti-related protein 20121230 -9606 182 JAG1 - AGS|AHD|AWS|CD339|HJ1|JAGL1 HGNC:6188|MIM:601920|Ensembl:ENSG00000101384|HPRD:03562|Vega:OTTHUMG00000031872 20 20p12.1-p11.23 jagged 1 protein-coding JAG1 jagged 1 O protein jagged-1 20121230 -9606 183 AGT - ANHU|SERPINA8 HGNC:333|MIM:106150|Ensembl:ENSG00000135744|HPRD:00106|Vega:OTTHUMG00000037757 1 1q42.2 angiotensinogen (serpin peptidase inhibitor, clade A, member 8) protein-coding AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8) O alpha-1 antiproteinase, antitrypsin|angiotensin I|angiotensin II|angiotensinogen|pre-angiotensinogen|serine (or cysteine) proteinase inhibitor|serpin A8 20121230 -9606 185 AGTR1 - AG2S|AGTR1A|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|AT2R1A|AT2R1B|HAT1R HGNC:336|MIM:106165|Ensembl:ENSG00000144891|HPRD:00107|Vega:OTTHUMG00000159503 3 3q24 angiotensin II receptor, type 1 protein-coding AGTR1 angiotensin II receptor, type 1 O type-1 angiotensin II receptor|type-1B angiotensin II receptor 20121230 -9606 186 AGTR2 - AT2|ATGR2|MRX88 HGNC:338|MIM:300034|Ensembl:ENSG00000180772|HPRD:02071|Vega:OTTHUMG00000022243 X Xq22-q23 angiotensin II receptor, type 2 protein-coding AGTR2 angiotensin II receptor, type 2 O angiotensin II type-2 receptor|type-2 angiotensin II receptor 20121230 -9606 187 APLNR - AGTRL1|APJ|APJR|HG11 HGNC:339|MIM:600052|HPRD:02503 11 11q12 apelin receptor protein-coding APLNR apelin receptor O APJ (apelin) receptor|APJ receptor|G protein-coupled receptor APJ|G-protein coupled receptor APJ|G-protein coupled receptor HG11|HG11 orphan receptor|angiotensin II receptor-like 1|angiotensin receptor-like 1 20121230 -9606 189 AGXT - AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6 HGNC:341|MIM:604285|Ensembl:ENSG00000172482|HPRD:05048|Vega:OTTHUMG00000133354 2 2q37.3 alanine-glyoxylate aminotransferase protein-coding AGXT alanine-glyoxylate aminotransferase O L-alanine: glyoxylate aminotransferase 1|alanine--glyoxylate aminotransferase|hepatic peroxisomal alanine:glyoxylate aminotransferase|serine--pyruvate aminotransferase|serine-pyruvate aminotransferase|serine:pyruvate aminotransferase 20121230 -9606 190 NR0B1 - AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 HGNC:7960|MIM:300473|Ensembl:ENSG00000169297|HPRD:08362|Vega:OTTHUMG00000021323 X Xp21.3 nuclear receptor subfamily 0, group B, member 1 protein-coding NR0B1 nuclear receptor subfamily 0, group B, member 1 O DSS-AHC critical region on the X chromosome protein 1|nuclear hormone receptor|nuclear receptor DAX-1|nuclear receptor DAX1|nuclear receptor subfamily 0 group B member 1 20121230 -9606 191 AHCY - SAHH|adoHcyase HGNC:343|MIM:180960|Ensembl:ENSG00000101444|HPRD:01621|Vega:OTTHUMG00000140098 20 20q11.22 adenosylhomocysteinase protein-coding AHCY adenosylhomocysteinase O S-adenosyl-L-homocysteine hydrolase|S-adenosylhomocysteine hydrolase 20121230 -9606 192 AIC - - HGNC:350|MIM:304050 X Xp22 Aicardi syndrome unknown AIC Aicardi syndrome O - 20120622 -9606 196 AHR - bHLHe76 HGNC:348|MIM:600253|Ensembl:ENSG00000106546|HPRD:02596|Vega:OTTHUMG00000149967 7 7p15 aryl hydrocarbon receptor protein-coding AHR aryl hydrocarbon receptor O AH-receptor|ah receptor|aromatic hydrocarbon receptor|class E basic helix-loop-helix protein 76 20121230 -9606 197 AHSG PRO2743 A2HS|AHS|FETUA|HSGA HGNC:349|MIM:138680|Ensembl:ENSG00000145192|HPRD:00727|Vega:OTTHUMG00000156605 3 3q27 alpha-2-HS-glycoprotein protein-coding AHSG alpha-2-HS-glycoprotein O alpha-2-Z-globulin|ba-alpha-2-glycoprotein|fetuin-A 20121230 -9606 199 AIF1 DADB-70P7.8 AIF-1|IBA1|IRT-1|IRT1 HGNC:352|MIM:601833|Ensembl:ENSG00000204472|HPRD:03496|Vega:OTTHUMG00000031246 6 6p21.3 allograft inflammatory factor 1 protein-coding AIF1 allograft inflammatory factor 1 O allograft inflammatory factor-1 splice variant Hara-1|interferon gamma responsive transcript|ionized calcium-binding adapter molecule 1|protein G1 20121230 -9606 201 AIH3 - - HGNC:355|MIM:301201 X Xq22-q28 amelogenesis imperfecta 3, hypomaturation or hypoplastic type unknown AIH3 amelogenesis imperfecta 3, hypomaturation or hypoplastic type O - 20110215 -9606 202 AIM1 RP11-294H11.2 CRYBG1|ST4 HGNC:356|MIM:601797|Ensembl:ENSG00000112297|HPRD:18576|Vega:OTTHUMG00000015302 6 6q21 absent in melanoma 1 protein-coding AIM1 absent in melanoma 1 O absent in melanoma 1 protein|beta-gamma crystallin domain containing 1|beta/gamma crystallin domain-containing protein 1|suppression of tumorigenicity 4 (malignant melanoma) 20121230 -9606 203 AK1 RP11-203J24.1 - HGNC:361|MIM:103000|Ensembl:ENSG00000106992|HPRD:00046|Vega:OTTHUMG00000020722 9 9q34.1 adenylate kinase 1 protein-coding AK1 adenylate kinase 1 O AK 1|ATP-AMP transphosphorylase 1|adenylate kinase isoenzyme 1|myokinase 20121230 -9606 204 AK2 - ADK2|AK 2 HGNC:362|MIM:103020|Ensembl:ENSG00000004455|HPRD:00047|Vega:OTTHUMG00000004131 1 1p34 adenylate kinase 2 protein-coding AK2 adenylate kinase 2 O ATP-AMP transphosphorylase 2|adenylate kinase 2, mitochondrial|adenylate kinase isoenzyme 2, mitochondrial 20121230 -9606 205 AK4 RP4-686B20.1 AK3|AK3L1|AK3L2 HGNC:363|MIM:103030|Ensembl:ENSG00000162433|HPRD:00048|Vega:OTTHUMG00000009033 1 1p31.3 adenylate kinase 4 protein-coding AK4 adenylate kinase 4 O ATP-AMP transphosphorylase|GTP:AMP phosphotransferase|adenylate kinase 3-like 1|adenylate kinase isoenzyme 4, mitochondrial|mitochondrial adenylate kinase-3|nucleoside-triphosphate-adenylate kinase 20121230 -9606 206 AK4P1 - AK3P1 HGNC:364 17 17q11.2 adenylate kinase 4 pseudogene 1 pseudo AK4P1 adenylate kinase 4 pseudogene 1 O - 20121230 -9606 207 AKT1 - AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA HGNC:391|MIM:164730|Ensembl:ENSG00000142208|HPRD:01261|Vega:OTTHUMG00000170795 14 14q32.32 v-akt murine thymoma viral oncogene homolog 1 protein-coding AKT1 v-akt murine thymoma viral oncogene homolog 1 O PKB alpha|RAC-PK-alpha|RAC-alpha serine/threonine-protein kinase|protein kinase B alpha|proto-oncogene c-Akt|rac protein kinase alpha 20121230 -9606 208 AKT2 - HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA HGNC:392|MIM:164731|Ensembl:ENSG00000105221|HPRD:01262|Vega:OTTHUMG00000137375 19 19q13.1-q13.2 v-akt murine thymoma viral oncogene homolog 2 protein-coding AKT2 v-akt murine thymoma viral oncogene homolog 2 O PKB beta|RAC-PK-beta|RAC-beta serine/threonine-protein kinase|murine thymoma viral (v-akt) homolog-2|protein kinase Akt-2|protein kinase B beta|rac protein kinase beta 20121230 -9606 210 ALAD RP11-10I9.1 ALADH|PBGS HGNC:395|MIM:125270|Ensembl:ENSG00000148218|HPRD:00504|Vega:OTTHUMG00000020522 9 9q33.1 aminolevulinate dehydratase protein-coding ALAD aminolevulinate dehydratase O aminolevulinate, delta-, dehydratase|delta-aminolevulinic acid dehydratase|porphobilinogen synthase 20121230 -9606 211 ALAS1 OK/SW-cl.121 ALAS|ALAS3|ALASH|MIG4 HGNC:396|MIM:125290|Ensembl:ENSG00000023330|HPRD:00505|Vega:OTTHUMG00000158108 3 3p21.1 aminolevulinate, delta-, synthase 1 protein-coding ALAS1 aminolevulinate, delta-, synthase 1 O 5-aminolevulinate synthase, nonspecific, mitochondrial|5-aminolevulinic acid synthase 1|ALAS-H|delta-ALA synthase 1|delta-aminolevulinate synthase 1|migration-inducing protein 4 20121230 -9606 212 ALAS2 RP5-884M20.1 ALAS-E|ALASE|ANH1|ASB|XLDPP|XLEPP|XLSA HGNC:397|MIM:301300|Ensembl:ENSG00000158578|HPRD:02356|Vega:OTTHUMG00000021641 X Xp11.21 aminolevulinate, delta-, synthase 2 protein-coding ALAS2 aminolevulinate, delta-, synthase 2 O 5-aminolevulinate synthase, erythroid-specific, mitochondrial|5-aminolevulinic acid synthase 2|delta-ALA synthase 2|delta-ALA synthetase|delta-aminolevulinate synthase 2 20121230 -9606 213 ALB GIG20 PRO0883|PRO0903|PRO1341 HGNC:399|MIM:103600|Ensembl:ENSG00000163631|HPRD:00062|Vega:OTTHUMG00000129919 4 4q13.3 albumin protein-coding ALB albumin O albumin (32 AA)|albumin (AA 34)|cell growth inhibiting protein 42|growth-inhibiting protein 20|serum albumin 20121230 -9606 214 ALCAM - CD166|MEMD HGNC:400|MIM:601662|Ensembl:ENSG00000170017|HPRD:03389|Vega:OTTHUMG00000159192 3 3q13.1 activated leukocyte cell adhesion molecule protein-coding ALCAM activated leukocyte cell adhesion molecule O CD166 antigen 20121230 -9606 215 ABCD1 - ABC42|ALD|ALDP|AMN HGNC:61|MIM:300371|Ensembl:ENSG00000101986|HPRD:02300|Vega:OTTHUMG00000024215 X Xq28 ATP-binding cassette, sub-family D (ALD), member 1 protein-coding ABCD1 ATP-binding cassette, sub-family D (ALD), member 1 O ATP-binding cassette sub-family D member 1|adrenoleukodystrophy protein 20121230 -9606 216 ALDH1A1 RP11-151D14.2 ALDC|ALDH-E1|ALDH1|ALDH11|PUMB1|RALDH1 HGNC:402|MIM:100640|Ensembl:ENSG00000165092|HPRD:00001|Vega:OTTHUMG00000020019 9 9q21.13 aldehyde dehydrogenase 1 family, member A1 protein-coding ALDH1A1 aldehyde dehydrogenase 1 family, member A1 O ALDH class 1|ALHDII|RALDH 1|acetaldehyde dehydrogenase 1|aldehyde dehydrogenase 1, soluble|aldehyde dehydrogenase, liver cytosolic|retinal dehydrogenase 1|retinaldehyde dehydrogenase 1 20121230 -9606 217 ALDH2 - ALDH-E2|ALDHI|ALDM HGNC:404|MIM:100650|Ensembl:ENSG00000111275|HPRD:00003|Vega:OTTHUMG00000169603 12 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) protein-coding ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) O ALDH class 2|acetaldehyde dehydrogenase 2|aldehyde dehydrogenase, mitochondrial|liver mitochondrial ALDH|nucleus-encoded mitochondrial aldehyde dehydrogenase 2 20121230 -9606 218 ALDH3A1 - ALDH3|ALDHIII HGNC:405|MIM:100660|Ensembl:ENSG00000108602|HPRD:00004|Vega:OTTHUMG00000059469 17 17p11.2 aldehyde dehydrogenase 3 family, member A1 protein-coding ALDH3A1 aldehyde dehydrogenase 3 family, member A1 O aldehyde dehydrogenase isozyme 3|aldehyde dehydrogenase type III|aldehyde dehydrogenase, dimeric NADP-preferring|stomach aldehyde dehydrogenase 20121230 -9606 219 ALDH1B1 - ALDH5|ALDHX HGNC:407|MIM:100670|Ensembl:ENSG00000137124|HPRD:00005|Vega:OTTHUMG00000019938 9 9p11.1 aldehyde dehydrogenase 1 family, member B1 protein-coding ALDH1B1 aldehyde dehydrogenase 1 family, member B1 O ALDH class 2|acetaldehyde dehydrogenase 5|aldehyde dehydrogenase 5|aldehyde dehydrogenase X, mitochondrial 20121230 -9606 220 ALDH1A3 - ALDH1A6|ALDH6|RALDH3 HGNC:409|MIM:600463|Ensembl:ENSG00000184254|HPRD:02713|Vega:OTTHUMG00000149870 15 15q26.3 aldehyde dehydrogenase 1 family, member A3 protein-coding ALDH1A3 aldehyde dehydrogenase 1 family, member A3 O RALDH-3|acetaldehyde dehydrogenase 6|aldehyde dehydrogenase 6|aldehyde dehydrogenase family 1 member A3|retinaldehyde dehydrogenase 3 20121230 -9606 221 ALDH3B1 - ALDH4|ALDH7 HGNC:410|MIM:600466|HPRD:02716 11 11q13 aldehyde dehydrogenase 3 family, member B1 protein-coding ALDH3B1 aldehyde dehydrogenase 3 family, member B1 O aldehyde dehydrogenase 3B1|aldehyde dehydrogenase 7|aldehyde dehydrogenase family 3 member B1 20121230 -9606 222 ALDH3B2 - ALDH8 HGNC:411|MIM:601917|Ensembl:ENSG00000132746|HPRD:03559|Vega:OTTHUMG00000167284 11 11q13 aldehyde dehydrogenase 3 family, member B2 protein-coding ALDH3B2 aldehyde dehydrogenase 3 family, member B2 O acetaldehyde dehydrogenase 8|aldehyde dehydrogenase 8|aldehyde dehydrogenase family 3 member B2 20121230 -9606 223 ALDH9A1 - ALDH4|ALDH7|ALDH9|E3|TMABADH HGNC:412|MIM:602733|Ensembl:ENSG00000143149|HPRD:04109|Vega:OTTHUMG00000034677 1 1q23.1 aldehyde dehydrogenase 9 family, member A1 protein-coding ALDH9A1 aldehyde dehydrogenase 9 family, member A1 O 4-trimethylaminobutyraldehyde dehydrogenase|R-aminobutyraldehyde dehydrogenase|aldehyde dehydrogenase (NAD+)|aldehyde dehydrogenase E3 isozyme|aldehyde dehydrogenase family 9 member A1|gamma-aminobutyraldehyde dehydrogenase 20121230 -9606 224 ALDH3A2 - ALDH10|FALDH|SLS HGNC:403|MIM:609523|Ensembl:ENSG00000072210|HPRD:07188|Vega:OTTHUMG00000059471 17 17p11.2 aldehyde dehydrogenase 3 family, member A2 protein-coding ALDH3A2 aldehyde dehydrogenase 3 family, member A2 O aldehyde dehydrogenase 10|aldehyde dehydrogenase family 3 member A2|fatty aldehyde dehydrogenase|microsomal aldehyde dehydrogenase 20121230 -9606 225 ABCD2 - ABC39|ALDL1|ALDR|ALDRP|hALDR HGNC:66|MIM:601081|Ensembl:ENSG00000173208|HPRD:03051|Vega:OTTHUMG00000169337 12 12q12 ATP-binding cassette, sub-family D (ALD), member 2 protein-coding ABCD2 ATP-binding cassette, sub-family D (ALD), member 2 O ATP-binding cassette sub-family D member 2|adrenoleukodystrophy-like 1|adrenoleukodystrophy-related protein 20121230 -9606 226 ALDOA - ALDA|GSD12 HGNC:414|MIM:103850|Ensembl:ENSG00000149925|HPRD:00070|Vega:OTTHUMG00000132107 16 16p11.2 aldolase A, fructose-bisphosphate protein-coding ALDOA aldolase A, fructose-bisphosphate O fructose-1,6-bisphosphate triosephosphate-lyase|fructose-bisphosphate aldolase A|lung cancer antigen NY-LU-1|muscle-type aldolase 20121230 -9606 228 ALDOAP2 - - HGNC:416 10 10q26.13 aldolase A, fructose-bisphosphate pseudogene 2 pseudo ALDOAP2 aldolase A, fructose-bisphosphate pseudogene 2 O - 20121230 -9606 229 ALDOB RP11-490D19.1 ALDB|ALDO2 HGNC:417|MIM:612724|Ensembl:ENSG00000136872|HPRD:01972|Vega:OTTHUMG00000020378 9 9q21.3-q22.2 aldolase B, fructose-bisphosphate protein-coding ALDOB aldolase B, fructose-bisphosphate O aldolase 2|aldolase B, fructose-bisphosphatase|fructose-bisphosphate aldolase B|liver-type aldolase 20121230 -9606 230 ALDOC - ALDC HGNC:418|MIM:103870|Ensembl:ENSG00000109107|HPRD:02386|Vega:OTTHUMG00000132605 17 17cen-q12 aldolase C, fructose-bisphosphate protein-coding ALDOC aldolase C, fructose-bisphosphate O aldolase 3|brain-type aldolase|fructoaldolase C|fructose-1,6-biphosphate triosephosphate lyase|fructose-bisphosphate aldolase C 20121230 -9606 231 AKR1B1 - ADR|ALDR1|ALR2|AR HGNC:381|MIM:103880|Ensembl:ENSG00000085662|HPRD:00071|Vega:OTTHUMG00000155322 7 7q35 aldo-keto reductase family 1, member B1 (aldose reductase) protein-coding AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) O Lii5-2 CTCL tumor antigen|aldehyde reductase 1|aldo-keto reductase family 1 member B1|aldose reductase|low Km aldose reductase 20121230 -9606 236 AKR1B1P2 - ALDRP HGNC:425 3 3p12 aldo-keto reductase family 1, member B1 pseudogene 2 pseudo AKR1B1P2 aldo-keto reductase family 1, member B1 pseudogene 2 O - 20121230 -9606 238 ALK - CD246|NBLST3 HGNC:427|MIM:105590|Ensembl:ENSG00000171094|HPRD:00104|Vega:OTTHUMG00000152034 2 2p23 anaplastic lymphoma receptor tyrosine kinase protein-coding ALK anaplastic lymphoma receptor tyrosine kinase O ALK tyrosine kinase receptor|CD246 antigen|mutant anaplastic lymphoma kinase 20121230 -9606 239 ALOX12 - 12-LOX|12S-LOX|LOG12 HGNC:429|MIM:152391|Ensembl:ENSG00000108839|HPRD:01066|Vega:OTTHUMG00000102088 17 17p13.1 arachidonate 12-lipoxygenase protein-coding ALOX12 arachidonate 12-lipoxygenase O 12(S)-lipoxygenase|12S-lipoxygenase|arachidonate 12-lipoxygenase, 12S-type|platelet 12-LOX|platelet-type 12-lipoxygenase|platelet-type lipoxygenase 12 20121230 -9606 240 ALOX5 RP11-67C2.3 5-LO|5-LOX|5LPG|LOG5 HGNC:435|MIM:152390|Ensembl:ENSG00000012779|HPRD:01065|Vega:OTTHUMG00000018081 10 10q11.2 arachidonate 5-lipoxygenase protein-coding ALOX5 arachidonate 5-lipoxygenase O LOX-5|arachidonic 5-lipoxygenase alpha-10 isoform|arachidonic 5-lipoxygenase delta-10-13 isoform|arachidonic 5-lipoxygenase delta-13 isoform|arachidonic 5-lipoxygenase delta-p10 isoform|arachidonic acid 5-lipoxygenase|leukotriene A4 synthase 20121230 -9606 241 ALOX5AP - FLAP HGNC:436|MIM:603700|Ensembl:ENSG00000132965|HPRD:04742|Vega:OTTHUMG00000016677 13 13q12 arachidonate 5-lipoxygenase-activating protein protein-coding ALOX5AP arachidonate 5-lipoxygenase-activating protein O MK-886-binding protein 20121230 -9606 242 ALOX12B - 12R-LOX HGNC:430|MIM:603741|Ensembl:ENSG00000179477|HPRD:04772|Vega:OTTHUMG00000108180 17 17p13.1 arachidonate 12-lipoxygenase, 12R type protein-coding ALOX12B arachidonate 12-lipoxygenase, 12R type O 12R-lipoxygenase|arachidonate 12-lipoxygenase, 12R-type|epidermis-type lipoxygenase 12 20121230 -9606 243 ALOX12P1 - ALOX12P HGNC:431 17 17q11 arachidonate 12-lipoxygenase pseudogene 1 pseudo ALOX12P1 arachidonate 12-lipoxygenase pseudogene 1 O - 20121230 -9606 244 ANXA8L2 - ANXA8|bA145E20.2 HGNC:23335|Ensembl:ENSG00000186807|HPRD:03866|Vega:OTTHUMG00000018131 10 10q11.22 annexin A8-like 2 protein-coding ANXA8L2 annexin A8-like 2 O annexin A8-like protein 2|annexin A8L2 20121230 -9606 245 ALOX12P2 - ALOX12E HGNC:432 17 17p13 arachidonate 12-lipoxygenase pseudogene 2 pseudo ALOX12P2 arachidonate 12-lipoxygenase pseudogene 2 O - 20121230 -9606 246 ALOX15 - 15-LOX-1|15LOX-1 HGNC:433|MIM:152392|Ensembl:ENSG00000161905|HPRD:01067|Vega:OTTHUMG00000090746 17 17p13.3 arachidonate 15-lipoxygenase protein-coding ALOX15 arachidonate 15-lipoxygenase O 15-LOX|15-lipooxygenase-1|arachidonate omega-6 lipoxygenase 20121230 -9606 247 ALOX15B - 15-LOX-2 HGNC:434|MIM:603697|Ensembl:ENSG00000179593|HPRD:04739|Vega:OTTHUMG00000108181 17 17p13.1 arachidonate 15-lipoxygenase, type B protein-coding ALOX15B arachidonate 15-lipoxygenase, type B O 15-LOX-B|15S-lipoxygenase|arachidonate 15-lipoxygenase 2|arachidonate 15-lipoxygenase B|arachidonate 15-lipoxygenase type II|arachidonate 15-lipoxygenase, second type|arachidonate omega(6) lipoxygenase 20121230 -9606 248 ALPI - IAP HGNC:437|MIM:171740|Ensembl:ENSG00000163295|HPRD:01376|Vega:OTTHUMG00000133258 2 2q37.1 alkaline phosphatase, intestinal protein-coding ALPI alkaline phosphatase, intestinal O Kasahara isozyme|alkaline phosphomonoesterase|glycerophosphatase|intestinal alkaline phosphatase|intestinal-type alkaline phosphatase 20121230 -9606 249 ALPL - AP-TNAP|APTNAP|HOPS|TNAP|TNSALP HGNC:438|MIM:171760|Ensembl:ENSG00000162551|HPRD:01377|Vega:OTTHUMG00000002949 1 1p36.12 alkaline phosphatase, liver/bone/kidney protein-coding ALPL alkaline phosphatase, liver/bone/kidney O alkaline phosphatase liver/bone/kidney isozyme|alkaline phosphatase, tissue-nonspecific isozyme|alkaline phosphomonoesterase|glycerophosphatase|liver/bone/kidney-type alkaline phosphatase|tissue-nonspecific ALP 20121230 -9606 250 ALPP - ALP|PALP|PLAP|PLAP-1 HGNC:439|MIM:171800|Ensembl:ENSG00000163283|Vega:OTTHUMG00000133255 2 2q37 alkaline phosphatase, placental protein-coding ALPP alkaline phosphatase, placental O Regan isozyme|alkaline phosphatase Regan isozyme|alkaline phosphatase, placental type|alkaline phosphomonoesterase|glycerophosphatase|placental alkaline phosphatase 1 20121230 -9606 251 ALPPL2 - ALPG|ALPPL|GCAP HGNC:441|MIM:171810|Ensembl:ENSG00000163286|HPRD:01380|Vega:OTTHUMG00000133257 2 2q37 alkaline phosphatase, placental-like 2 protein-coding ALPPL2 alkaline phosphatase, placental-like 2 O ALP-1|Nagao isozyme|alkaline phosphatase Nagao isozyme|alkaline phosphatase, placental-like|germ cell alkaline phosphatase|placental-like alkaline phosphatase|testicular and thymus alkaline phosphatase 20121230 -9606 253 ALS3 - ALS6 HGNC:444|MIM:606640 18 18q21 amyotrophic lateral sclerosis 3 (autosomal dominant) unknown ALS3 amyotrophic lateral sclerosis 3 (autosomal dominant) O - 20120622 -9606 255 ALS5 - - HGNC:446|MIM:602099 15 15q15.1-q21.1 amyotrophic lateral sclerosis 5 unknown ALS5 amyotrophic lateral sclerosis 5 O - 20120622 -9606 257 ALX3 - FND1 HGNC:449|MIM:606014|Ensembl:ENSG00000156150|HPRD:16190|Vega:OTTHUMG00000011650 1 1p13.3 ALX homeobox 3 protein-coding ALX3 ALX homeobox 3 O aristaless-like homeobox 3|homeobox protein aristaless-like 3|proline-rich transcription factor ALX3 20121230 -9606 258 AMBN - - HGNC:452|MIM:601259|Ensembl:ENSG00000178522|HPRD:03160|Vega:OTTHUMG00000129913 4 4q21 ameloblastin (enamel matrix protein) protein-coding AMBN ameloblastin (enamel matrix protein) O ameloblastin 20121230 -9606 259 AMBP - A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI HGNC:453|MIM:176870|Ensembl:ENSG00000106927|HPRD:01467|Vega:OTTHUMG00000020534 9 9q32-q33 alpha-1-microglobulin/bikunin precursor protein-coding AMBP alpha-1-microglobulin/bikunin precursor O bikunin|complex-forming glycoprotein heterogeneous in charge|growth-inhibiting protein 19|inter-alpha-trypsin inhibitor light chain|protein AMBP|protein HC|trypstatin|uristatin|uronic-acid-rich protein 20121230 -9606 261 AMCN - AMC|AMC1|AMCN1 HGNC:456|MIM:208100 5 5q35 arthrogryposis multiplex congenita, neurogenic unknown AMCN arthrogryposis multiplex congenita, neurogenic O - 20120622 -9606 262 AMD1 RP11-397G5.3 ADOMETDC|AMD|SAMDC HGNC:457|MIM:180980|Ensembl:ENSG00000123505|HPRD:01622|Vega:OTTHUMG00000015369 6 6q21 adenosylmethionine decarboxylase 1 protein-coding AMD1 adenosylmethionine decarboxylase 1 O S-adenosylmethionine decarboxylase 1|S-adenosylmethionine decarboxylase proenzyme 20121230 -9606 263 AMDP1 - AMD|AMD2|AMDPX|AMDPY HGNC:460 X|Y Xq28 and Yq12 adenosylmethionine decarboxylase pseudogene 1 pseudo AMDP1 adenosylmethionine decarboxylase pseudogene 1 O - 20121230 -9606 265 AMELX - AI1E|AIH1|ALGN|AMG|AMGL|AMGX HGNC:461|MIM:300391|Ensembl:ENSG00000125363|HPRD:02313|Vega:OTTHUMG00000021130 X Xp22.31-p22.1 amelogenin, X-linked protein-coding AMELX amelogenin, X-linked O amelogenesis imperfecta 1|amelogenin (X chromosome, amelogenesis imperfecta 1)|amelogenin (amelogenesis imperfecta 1, X-linked)|amelogenin, X isoform 20121230 -9606 266 AMELY - AMGL|AMGY HGNC:462|MIM:410000|Ensembl:ENSG00000099721|HPRD:02462|Vega:OTTHUMG00000035297 Y Yp11.2 amelogenin, Y-linked protein-coding AMELY amelogenin, Y-linked O amelogenin (Y chromosome)|amelogenin, Y isoform 20121230 -9606 267 AMFR - GP78|RNF45 HGNC:463|MIM:603243|Ensembl:ENSG00000159461|HPRD:09130|Vega:OTTHUMG00000133239 16 16q21 autocrine motility factor receptor, E3 ubiquitin protein ligase protein-coding AMFR autocrine motility factor receptor, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase AMFR|RING finger protein 45 20121230 -9606 268 AMH - MIF|MIS HGNC:464|MIM:600957|Ensembl:ENSG00000104899|HPRD:02979|Vega:OTTHUMG00000180415 19 19p13.3 anti-Mullerian hormone protein-coding AMH anti-Mullerian hormone O Mullerian inhibiting factor|Mullerian inhibiting substance|anti-Muellerian hormone|muellerian-inhibiting factor|muellerian-inhibiting substance 20121230 -9606 269 AMHR2 - AMHR|MISR2|MISRII|MRII HGNC:465|MIM:600956|Ensembl:ENSG00000135409|HPRD:02978|Vega:OTTHUMG00000170048 12 12q13 anti-Mullerian hormone receptor, type II protein-coding AMHR2 anti-Mullerian hormone receptor, type II O AMH type II receptor|MIS type II receptor|Mullerian inhibiting substance type II receptor|anti-Muellerian hormone type II receptor|anti-Muellerian hormone type-2 receptor 20121230 -9606 270 AMPD1 RP5-1000E10.1 MAD|MADA HGNC:468|MIM:102770|Ensembl:ENSG00000116748|HPRD:00040|Vega:OTTHUMG00000011892 1 1p13 adenosine monophosphate deaminase 1 protein-coding AMPD1 adenosine monophosphate deaminase 1 O AMP deaminase 1|AMPD|adenosine monophosphate deaminase 1 (isoform M)|adenosine monophosphate deaminase-1 (muscle)|myoadenylate deaminase|skeletal muscle AMPD 20121230 -9606 271 AMPD2 RP5-1160K1.5 - HGNC:469|MIM:102771|Ensembl:ENSG00000116337|HPRD:11808|Vega:OTTHUMG00000011649 1 1p13.3 adenosine monophosphate deaminase 2 protein-coding AMPD2 adenosine monophosphate deaminase 2 O AMP deaminase 2|AMPD|adenosine monophosphate deaminase 2 (isoform L) 20121230 -9606 272 AMPD3 - - HGNC:470|MIM:102772|Ensembl:ENSG00000133805|HPRD:00041|Vega:OTTHUMG00000165682 11 11p15 adenosine monophosphate deaminase 3 protein-coding AMPD3 adenosine monophosphate deaminase 3 O AMP aminohydrolase|AMP deaminase 3|adenosine monophosphate deaminase (isoform E)|erythrocyte AMP deaminase|erythrocyte type AMP deaminase|erythrocyte-specific AMP deaminase|myoadenylate deaminase 20121230 -9606 273 AMPH - AMPH1 HGNC:471|MIM:600418|Ensembl:ENSG00000078053|HPRD:02687|Vega:OTTHUMG00000023725 7 7p14-p13 amphiphysin protein-coding AMPH amphiphysin O amphiphysin (Stiff-Mann syndrome with breast cancer 128kD autoantigen)|amphiphysin I 20121230 -9606 274 BIN1 - AMPH2|AMPHL|SH3P9 HGNC:1052|MIM:601248|Ensembl:ENSG00000136717|HPRD:03150|Vega:OTTHUMG00000131465 2 2q14 bridging integrator 1 protein-coding BIN1 bridging integrator 1 O amphiphysin II|amphiphysin-like protein|box dependant MYC interacting protein 1|box-dependent myc-interacting protein 1|myc box-dependent-interacting protein 1 20121230 -9606 275 AMT - GCE|GCST|GCVT|NKH HGNC:473|MIM:238310|Ensembl:ENSG00000145020|HPRD:01997|Vega:OTTHUMG00000156847 3 3p21.2-p21.1 aminomethyltransferase protein-coding AMT aminomethyltransferase O aminomethyltransferase, mitochondrial|glycine cleavage system T protein|glycine cleavage system protein T 20121230 -9606 276 AMY1A - AMY1 HGNC:474|MIM:104700|Ensembl:ENSG00000237763|HPRD:00096|Vega:OTTHUMG00000011020 1 1p21 amylase, alpha 1A (salivary) protein-coding AMY1A amylase, alpha 1A (salivary) O 1,4-alpha-D-glucan glucanohydrolase 1|alpha-amylase 1|amylase, salivary, alpha-1A|glycogenase|salivary alpha-amylase|salivary amylase alpha 1A 20121222 -9606 277 AMY1B RP11-508C1.1 AMY1 HGNC:475|MIM:104701|Ensembl:ENSG00000174876|HPRD:18510|Vega:OTTHUMG00000011021 1 1p21 amylase, alpha 1B (salivary) protein-coding AMY1B amylase, alpha 1B (salivary) O 1,4-alpha-D-glucan glucanohydrolase 1|alpha-amylase 1|amylase, salivary, alpha-1B|glycogenase|salivary alpha-amylase|salivary amylase alpha 1B 20121222 -9606 278 AMY1C RP11-508C1.3 AMY1 HGNC:476|MIM:104702|Ensembl:ENSG00000187733|HPRD:15911|Vega:OTTHUMG00000011045 1 1p21 amylase, alpha 1C (salivary) protein-coding AMY1C amylase, alpha 1C (salivary) O 1,4-alpha-D-glucan glucanohydrolase 1|alpha-amylase 1|amylase, salivary, alpha-1C|glycogenase|salivary alpha-amylase|salivary amylase alpha 1C 20121230 -9606 279 AMY2A - AMY2|AMY2B|PA HGNC:477|MIM:104650|Ensembl:ENSG00000243480|HPRD:00094|Vega:OTTHUMG00000011023 1 1p21 amylase, alpha 2A (pancreatic) protein-coding AMY2A amylase, alpha 2A (pancreatic) O 1,4-alpha-D-glucan glucanohydrolase|alpha-amylase|amylase, pancreatic, alpha-2A|found in the pancreas|glycogenase|pancreatic alpha-amylase|pancreatic amylase 2A|pancreatic amylase alpha 2A 20121230 -9606 280 AMY2B - AMY2 HGNC:478|MIM:104660|Ensembl:ENSG00000240038|HPRD:00095|Vega:OTTHUMG00000011024 1 1p21 amylase, alpha 2B (pancreatic) protein-coding AMY2B amylase, alpha 2B (pancreatic) O 1,4-alpha-D-glucan glucanohydrolase 2B|alpha-amylase 2B|alpha-amylase carcinoid|carcinoid alpha-amylase|glycogenase 20121230 -9606 281 AMYP1 - AMY2P HGNC:479 1 1p21 amylase, alpha pseudogene 1 pseudo AMYP1 amylase, alpha pseudogene 1 O - 20121230 -9606 282 ANCR - - HGNC:482 15 15q11-q12 Angelman syndrome chromosome region other ANCR Angelman syndrome chromosome region O - 20120719 -9606 283 ANG - ALS9|HEL168|RNASE4|RNASE5 HGNC:483|MIM:105850|Ensembl:ENSG00000214274|HPRD:00105|Vega:OTTHUMG00000029576 14 14q11.1-q11.2 angiogenin, ribonuclease, RNase A family, 5 protein-coding ANG angiogenin, ribonuclease, RNase A family, 5 O RNase 5|angiogenin|epididymis luminal protein 168|ribonuclease 5 20121230 -9606 284 ANGPT1 - AGP1|AGPT|ANG1 HGNC:484|MIM:601667|Ensembl:ENSG00000154188|HPRD:03392|Vega:OTTHUMG00000164812 8 8q23.1 angiopoietin 1 protein-coding ANGPT1 angiopoietin 1 O ANG-1|angiopoietin-1 20121230 -9606 285 ANGPT2 - AGPT2|ANG2 HGNC:485|MIM:601922|Ensembl:ENSG00000091879|HPRD:03563|Vega:OTTHUMG00000090365 8 8p23.1 angiopoietin 2 protein-coding ANGPT2 angiopoietin 2 O ANG-2|Tie2-ligand|angiopoietin-2|angiopoietin-2B|angiopoietin-2a 20121230 -9606 286 ANK1 - ANK|SPH1|SPH2 HGNC:492|MIM:612641|Ensembl:ENSG00000029534|HPRD:01693|Vega:OTTHUMG00000150281 8 8p11.1 ankyrin 1, erythrocytic protein-coding ANK1 ankyrin 1, erythrocytic O ANK-1|ankyrin-1|ankyrin-R|erythrocyte ankyrin 20121230 -9606 287 ANK2 - ANK-2|LQT4|brank-2 HGNC:493|MIM:106410|Ensembl:ENSG00000145362|HPRD:00110|Vega:OTTHUMG00000132912 4 4q25-q27 ankyrin 2, neuronal protein-coding ANK2 ankyrin 2, neuronal O ankyrin B|ankyrin, brain|ankyrin-2|ankyrin-2, nonerythrocytic|non-erythroid ankyrin 20121230 -9606 288 ANK3 RP11-369L1.1 ANKYRIN-G HGNC:494|MIM:600465|Ensembl:ENSG00000151150|HPRD:02715|Vega:OTTHUMG00000018288 10 10q21 ankyrin 3, node of Ranvier (ankyrin G) protein-coding ANK3 ankyrin 3, node of Ranvier (ankyrin G) O ankyrin G119|ankyrin-3 20121230 -9606 289 ANOP1 - MCOPS4 HGNC:498|MIM:301590 X Xq27-q28 anophthalmos 1 (with mental retardation, without limb anomalies or dental or urogenital abnormalities) unknown ANOP1 anophthalmos 1 (with mental retardation, without limb anomalies or dental or urogenital abnormalities) O - 20110626 -9606 290 ANPEP - APN|CD13|GP150|LAP1|P150|PEPN HGNC:500|MIM:151530|Ensembl:ENSG00000166825|HPRD:01055|Vega:OTTHUMG00000149814 15 15q25-q26 alanyl (membrane) aminopeptidase protein-coding ANPEP alanyl (membrane) aminopeptidase O AP-M|AP-N|alanyl aminopeptidase|aminopeptidase M|aminopeptidase N|hAPN|microsomal aminopeptidase|myeloid plasma membrane glycoprotein CD13 20121230 -9606 291 SLC25A4 - AAC1|ANT|ANT1|PEO2|PEO3|T1 HGNC:10990|MIM:103220|Ensembl:ENSG00000151729|HPRD:00058|Vega:OTTHUMG00000134299 4 4q35 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 protein-coding SLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 O ADP,ATP carrier protein 1|ADP,ATP carrier protein, heart/skeletal muscle|ADP/ATP translocase 1|ANT 1|adenine nucleotide translocator 1 (skeletal muscle)|heart/skeletal muscle ATP/ADP translocator|solute carrier family 25 member 4 20121230 -9606 292 SLC25A5 - 2F1|AAC2|ANT2|T2|T3 HGNC:10991|MIM:300150|Ensembl:ENSG00000005022|HPRD:02147|Vega:OTTHUMG00000022715 X Xq24 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 protein-coding SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 O ADP,ATP carrier protein 2|ADP,ATP carrier protein, fibroblast isoform|ADP/ATP carrier protein|ADP/ATP translocase 2|ANT 2|adenine nucleotide translocator 2 (fibroblast)|solute carrier family 25 member 5 20121230 -9606 293 SLC25A6 RP11-261P4.6 AAC3|ANT3|ANT3Y HGNC:10992|MIM:300151|MIM:403000|Ensembl:ENSG00000169100|HPRD:02461|Vega:OTTHUMG00000021058 X|Y Xp22.32 and Yp11.3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 protein-coding SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 O ADP,ATP carrier protein|ADP,ATP carrier protein 3|ADP,ATP carrier protein, liver|ADP/ATP translocase 3|ADP/ATP translocator of liver|ANT 2|ANT 3|adenine nucleotide translocator 3|solute carrier family 25 member 6 20121230 -9606 301 ANXA1 RP11-71A24.1 ANX1|LPC1 HGNC:533|MIM:151690|Ensembl:ENSG00000135046|HPRD:01060|Vega:OTTHUMG00000020016 9 9q21.13 annexin A1 protein-coding ANXA1 annexin A1 O annexin I (lipocortin I)|annexin-1|calpactin II|calpactin-2|chromobindin-9|lipocortin I|p35|phospholipase A2 inhibitory protein 20121230 -9606 302 ANXA2 - ANX2|ANX2L4|CAL1H|LIP2|LPC2|LPC2D|P36|PAP-IV HGNC:537|MIM:151740|Ensembl:ENSG00000182718|HPRD:01061|Vega:OTTHUMG00000132763 15 15q22.2 annexin A2 protein-coding ANXA2 annexin A2 O annexin II|annexin-2|calpactin I heavy chain|calpactin I heavy polypeptide|calpactin-1 heavy chain|chromobindin 8|chromobindin-8|lipocortin II|placental anticoagulant protein IV|protein I 20121230 -9606 303 ANXA2P1 - ANX2L1|ANX2P1|LPC2A HGNC:538 4 4q31.3 annexin A2 pseudogene 1 pseudo ANXA2P1 annexin A2 pseudogene 1 O - 20121230 -9606 304 ANXA2P2 - ANX2L2|ANX2P2|LPC2B HGNC:539 9 9p13 annexin A2 pseudogene 2 pseudo ANXA2P2 annexin A2 pseudogene 2 O - 20121230 -9606 305 ANXA2P3 - ANX2L3|ANX2P3|LIP2|LPC2C HGNC:540 10 10q21.3 annexin A2 pseudogene 3 pseudo ANXA2P3 annexin A2 pseudogene 3 O - 20121230 -9606 306 ANXA3 - ANX3 HGNC:541|MIM:106490|Ensembl:ENSG00000138772|HPRD:00111|Vega:OTTHUMG00000130198 4 4q21.21 annexin A3 protein-coding ANXA3 annexin A3 O 35-alpha calcimedin|Annexin III (lipocortin III)|PAP-III|annexin III (lipocortin III, 1,2-cyclic-inositol-phosphate phosphodiesterase, placental anticoagulant protein III, calcimedin 35-alpha)|annexin-3|calcimedin 35-alpha|inositol 1,2-cyclic phosphate 2-phosphohydrolase|lipocortin III|placental anticoagulant protein III 20121230 -9606 307 ANXA4 - ANX4|PIG28|ZAP36 HGNC:542|MIM:106491|Ensembl:ENSG00000196975|HPRD:00112|Vega:OTTHUMG00000129649 2 2p13 annexin A4 protein-coding ANXA4 annexin A4 O 35-beta calcimedin|P32.5|PAP-II|PP4-X|annexin IV (placental anticoagulant protein II)|annexin-4|carbohydrate-binding protein p33/p41|chromobindin-4|endonexin I|lipocortin IV|placental anticoagulant protein II|proliferation-inducing gene 28|proliferation-inducing protein 28|protein II 20121230 -9606 308 ANXA5 - ANX5|ENX2|PP4|RPRGL3 HGNC:543|MIM:131230|Ensembl:ENSG00000164111|HPRD:00568|Vega:OTTHUMG00000133034 4 4q27 annexin A5 protein-coding ANXA5 annexin A5 O CBP-I|PAP-I|VAC-alpha|anchorin CII|annexin V|annexin-5|calphobindin I|endonexin II|lipocortin V|placental anticoagulant protein 4|placental anticoagulant protein I|thromboplastin inhibitor|vascular anticoagulant-alpha 20121230 -9606 309 ANXA6 - ANX6|CBP68 HGNC:544|MIM:114070|Ensembl:ENSG00000197043|HPRD:00231|Vega:OTTHUMG00000164179 5 5q33.1 annexin A6 protein-coding ANXA6 annexin A6 O 67 kDa calelectrin|CPB-II|annexin VI (p68)|annexin-6|calcium-binding protein p68|calelectrin|calphobindin II|calphobindin-II|chromobindin-20|lipocortin VI|p68|p70 20121230 -9606 310 ANXA7 RP11-537A6.8 ANX7|SNX|SYNEXIN HGNC:545|MIM:186360|Ensembl:ENSG00000138279|HPRD:01720|Vega:OTTHUMG00000018463 10 10q22.2 annexin A7 protein-coding ANXA7 annexin A7 O annexin VII|annexin-7 20121230 -9606 311 ANXA11 RP11-369J21.10-010 ANX11|CAP50 HGNC:535|MIM:602572|Ensembl:ENSG00000122359|HPRD:03983|Vega:OTTHUMG00000018604 10 10q23 annexin A11 protein-coding ANXA11 annexin A11 O 56 kDa autoantigen|CAP-50|annexin XI|annexin-11|autoantigen, 56-kD|calcyclin-associated annexin 50 20121230 -9606 312 ANXA13 - ANX13|ISA HGNC:536|MIM:602573|Ensembl:ENSG00000104537|HPRD:03984|Vega:OTTHUMG00000164987 8 8q24.13 annexin A13 protein-coding ANXA13 annexin A13 O annexin XIII|annexin, intestine-specific|annexin-13|intestine-specific annexin 20121230 -9606 313 AOAH - - HGNC:548|MIM:102593|Ensembl:ENSG00000136250|HPRD:00027|Vega:OTTHUMG00000023566 7 7p14-p12 acyloxyacyl hydrolase (neutrophil) protein-coding AOAH acyloxyacyl hydrolase (neutrophil) O acyloxyacyl hydrolase 20121230 -9606 314 AOC2 - DAO2|RAO HGNC:549|MIM:602268|Ensembl:ENSG00000131480|HPRD:11889|Vega:OTTHUMG00000180655 17 17q21 amine oxidase, copper containing 2 (retina-specific) protein-coding AOC2 amine oxidase, copper containing 2 (retina-specific) O SSAO|retina-specific copper amine oxidase|semicarbazide-sensitive amine oxidase 20121230 -9606 316 AOX1 - AO|AOH1 HGNC:553|MIM:602841|Ensembl:ENSG00000138356|HPRD:07537|Vega:OTTHUMG00000154536 2 2q33 aldehyde oxidase 1 protein-coding AOX1 aldehyde oxidase 1 O aldehyde oxidase 20121230 -9606 317 APAF1 - APAF-1|CED4 HGNC:576|MIM:602233|Ensembl:ENSG00000120868|HPRD:03755|Vega:OTTHUMG00000170214 12 12q23 apoptotic peptidase activating factor 1 protein-coding APAF1 apoptotic peptidase activating factor 1 O apoptotic protease-activating factor 1 20121230 -9606 318 NUDT2 - APAH1 HGNC:8049|MIM:602852|Ensembl:ENSG00000164978|HPRD:04168|Vega:OTTHUMG00000019817 9 9p13 nudix (nucleoside diphosphate linked moiety X)-type motif 2 protein-coding NUDT2 nudix (nucleoside diphosphate linked moiety X)-type motif 2 O Ap4A hydrolase 1|Ap4Aase|bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)|bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]|diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase|diadenosine 5',5''-P1,P4-tetraphosphate pyrophosphohydrolase|diadenosine tetraphosphatase|nucleoside diphosphate-linked moiety X motif 2|nudix motif 2 20121230 -9606 319 APOF - Apo-F|LTIP HGNC:615|MIM:107760|Ensembl:ENSG00000175336|HPRD:00137|Vega:OTTHUMG00000170715 12 12q13.3 apolipoprotein F protein-coding APOF apolipoprotein F O lipid transfer inhibitor protein 20121230 -9606 320 APBA1 - D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA HGNC:578|MIM:602414|Ensembl:ENSG00000107282|HPRD:03879|Vega:OTTHUMG00000019984 9 9q13-q21.1 amyloid beta (A4) precursor protein-binding, family A, member 1 protein-coding APBA1 amyloid beta (A4) precursor protein-binding, family A, member 1 O adapter protein X11alpha|adaptor protein X11alpha|amyloid beta (A4) precursor protein-binding, family A, member 1 (X11)|amyloid beta A4 precursor protein-binding family A member 1|mint-1|neuron-specific X11 protein|neuronal munc18-1-interacting protein 1|phosphotyrosine-binding/-interacting domain (PTB)-bearing protein 20121230 -9606 321 APBA2 - D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L HGNC:579|MIM:602712|Ensembl:ENSG00000034053|HPRD:04090|Vega:OTTHUMG00000129255 15 15q11-q12 amyloid beta (A4) precursor protein-binding, family A, member 2 protein-coding APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 O X11-like protein|adapter protein X11beta|amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like)|amyloid beta A4 precursor protein-binding family A member 2|mint-2|neuron-specific X11L protein|neuronal munc18-1-interacting protein 2|phosphotyrosine-binding/-interacting domain (PTB)-bearing protein 20121230 -9606 322 APBB1 - FE65|MGC:9072|RIR HGNC:581|MIM:602709|Ensembl:ENSG00000166313|HPRD:04087|Vega:OTTHUMG00000165454 11 11p15 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) protein-coding APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) O adaptor protein FE65a2|amyloid beta A4 precursor protein-binding family B member 1|stat-like protein 20121230 -9606 323 APBB2 - FE65L|FE65L1 HGNC:582|MIM:602710|Ensembl:ENSG00000163697|HPRD:04088|Vega:OTTHUMG00000160416 4 4p13 amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 O Fe65-like 1|amyloid beta A4 precursor protein-binding family B member 2|protein Fe65-like 1 20121230 -9606 324 APC - BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 HGNC:583|MIM:611731|Ensembl:ENSG00000134982|HPRD:01439|Vega:OTTHUMG00000128806 5 5q21-q22 adenomatous polyposis coli protein-coding APC adenomatous polyposis coli O adenomatosis polyposis coli tumor suppressor|adenomatous polyposis coli protein|deleted in polyposis 2.5|protein phosphatase 1, regulatory subunit 46 20121230 -9606 325 APCS - PTX2|SAP HGNC:584|MIM:104770|Ensembl:ENSG00000132703|HPRD:00101|Vega:OTTHUMG00000022741 1 1q21-q23 amyloid P component, serum protein-coding APCS amyloid P component, serum O 9.5S alpha-1-glycoprotein|pentaxin-related|serum amyloid P-component 20121230 -9606 326 AIRE - AIRE1|APECED|APS1|APSI|PGA1 HGNC:360|MIM:607358|Ensembl:ENSG00000160224|HPRD:06301|Vega:OTTHUMG00000086921 21 21q22.3 autoimmune regulator protein-coding AIRE autoimmune regulator O autoimmune polyendocrinopathy candidiasis ectodermal dystrophy protein 20121230 -9606 327 APEH - AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH HGNC:586|MIM:102645|Ensembl:ENSG00000164062|HPRD:00034|Vega:OTTHUMG00000156882 3 3p21.31 N-acylaminoacyl-peptide hydrolase protein-coding APEH N-acylaminoacyl-peptide hydrolase O acyl-peptide hydrolase|acylamino-acid-releasing enzyme|acylaminoacyl-peptidase|oxidized protein hydrolase 20121230 -9606 328 APEX1 - APE|APE1|APEN|APEX|APX|HAP1|REF1 HGNC:587|MIM:107748|Ensembl:ENSG00000100823|HPRD:00136|Vega:OTTHUMG00000029544 14 14q11.2 APEX nuclease (multifunctional DNA repair enzyme) 1 protein-coding APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 O AP endonuclease class I|AP lyase|DNA-(apurinic or apyrimidinic site) lyase|apurinic-apyrimidinic endonuclease 1|apurinic/apyrimidinic (abasic) endonuclease|deoxyribonuclease (apurinic or apyrimidinic)|protein REF-1|redox factor-1 20121230 -9606 329 BIRC2 - API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 HGNC:590|MIM:601712|Ensembl:ENSG00000110330|HPRD:03419|Vega:OTTHUMG00000167325 11 11q22 baculoviral IAP repeat containing 2 protein-coding BIRC2 baculoviral IAP repeat containing 2 O IAP homolog B|IAP-2|NFR2-TRAF signalling complex protein|RING finger protein 48|TNFR2-TRAF-signaling complex protein 2|apoptosis inhibitor 1|baculoviral IAP repeat-containing 2|baculoviral IAP repeat-containing protein 2|inhibitor of apoptosis protein 2 20121230 -9606 330 BIRC3 - AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 HGNC:591|MIM:601721|Ensembl:ENSG00000023445|HPRD:03426|Vega:OTTHUMG00000167324 11 11q22 baculoviral IAP repeat containing 3 protein-coding BIRC3 baculoviral IAP repeat containing 3 O IAP homolog C|IAP-1|RING finger protein 49|TNFR2-TRAF signaling complex protein|TNFR2-TRAF-signaling complex protein 1|apoptosis inhibitor 2|baculoviral IAP repeat-containing 3|baculoviral IAP repeat-containing protein 3|inhibitor of apoptosis protein 1|mammalian IAP homolog C 20121230 -9606 331 XIAP RP1-315G1.5 API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 HGNC:592|MIM:300079|Ensembl:ENSG00000101966|HPRD:02094|Vega:OTTHUMG00000022336 X Xq25 X-linked inhibitor of apoptosis protein-coding XIAP X-linked inhibitor of apoptosis O E3 ubiquitin-protein ligase XIAP|IAP-like protein|X-linked IAP|X-linked inhibitor of apoptosis protein|baculoviral IAP repeat-containing 4|baculoviral IAP repeat-containing protein 4|inhibitor of apoptosis protein 3 20121230 -9606 332 BIRC5 - API4|EPR-1 HGNC:593|MIM:603352|Ensembl:ENSG00000089685|HPRD:04520|Vega:OTTHUMG00000177505 17 17q25 baculoviral IAP repeat containing 5 protein-coding BIRC5 baculoviral IAP repeat containing 5 O apoptosis inhibitor 4|apoptosis inhibitor survivin|baculoviral IAP repeat-containing protein 5|survivin variant 3 alpha 20121230 -9606 333 APLP1 - APLP HGNC:597|MIM:104775|Ensembl:ENSG00000105290|HPRD:00102|Vega:OTTHUMG00000180692 19 19q13.1 amyloid beta (A4) precursor-like protein 1 protein-coding APLP1 amyloid beta (A4) precursor-like protein 1 O APLP-1|amyloid precursor-like protein 1|amyloid-like protein 1 20121230 -9606 334 APLP2 - APLP-2|APPH|APPL2|CDEBP HGNC:598|MIM:104776|Ensembl:ENSG00000084234|HPRD:00103|Vega:OTTHUMG00000165767 11 11q24 amyloid beta (A4) precursor-like protein 2 protein-coding APLP2 amyloid beta (A4) precursor-like protein 2 O CDEI box-binding protein|amyloid precursor protein homolog HSD-2|amyloid-like protein 2 20121230 -9606 335 APOA1 - - HGNC:600|MIM:107680|Ensembl:ENSG00000118137|HPRD:02517|Vega:OTTHUMG00000046112 11 11q23-q24 apolipoprotein A-I protein-coding APOA1 apolipoprotein A-I O apo-AI|apoA-I 20121230 -9606 336 APOA2 - Apo-AII|ApoA-II|apoAII HGNC:601|MIM:107670|Ensembl:ENSG00000158874|HPRD:00129|Vega:OTTHUMG00000034346 1 1q23.3 apolipoprotein A-II protein-coding APOA2 apolipoprotein A-II O apolipoprotein A2 20121230 -9606 337 APOA4 - - HGNC:602|MIM:107690|Ensembl:ENSG00000110244|HPRD:00130|Vega:OTTHUMG00000046110 11 11q23 apolipoprotein A-IV protein-coding APOA4 apolipoprotein A-IV O apo-AIV|apoA-IV|apolipoprotein A4 20121230 -9606 338 APOB - FLDB|LDLCQ4 HGNC:603|MIM:107730|Ensembl:ENSG00000084674|HPRD:00133|Vega:OTTHUMG00000090785 2 2p24-p23 apolipoprotein B (including Ag(x) antigen) protein-coding APOB apolipoprotein B (including Ag(x) antigen) O apo B-100|apoB-100|apoB-48|apolipoprotein B-100|apolipoprotein B48|mutant Apo B 100 20121230 -9606 339 APOBEC1 - APOBEC-1|BEDP|CDAR1|HEPR HGNC:604|MIM:600130|Ensembl:ENSG00000111701|HPRD:02531|Vega:OTTHUMG00000141288 12 12p13.1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 protein-coding APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 O C->U-editing enzyme APOBEC-1|apolipoprotein B mRNA editing enzyme complex-1|apolipoprotein B mRNA-editing enzyme 1 20121230 -9606 341 APOC1 - - HGNC:607|MIM:107710|Ensembl:ENSG00000130208|HPRD:00131|Vega:OTTHUMG00000180844 19 19q13.2 apolipoprotein C-I protein-coding APOC1 apolipoprotein C-I O apo-CIB|apoC-IB|apolipoprotein C1 20121230 -9606 342 APOC1P1 - - HGNC:608 19 19q13.2 apolipoprotein C-I pseudogene 1 pseudo APOC1P1 apolipoprotein C-I pseudogene 1 O - 20121230 -9606 343 AQP8 - AQP-8 HGNC:642|MIM:603750|Ensembl:ENSG00000103375|HPRD:04778|Vega:OTTHUMG00000097013 16 16p12 aquaporin 8 protein-coding AQP8 aquaporin 8 O aquaporin-8 20121230 -9606 344 APOC2 - APO-CII|APOC-II HGNC:609|MIM:608083|Ensembl:ENSG00000224916|Ensembl:ENSG00000234906|HPRD:07457|Vega:OTTHUMG00000180847 19 19q13.2 apolipoprotein C-II protein-coding APOC2 apolipoprotein C-II O apolipoprotein C2 20121230 -9606 345 APOC3 - APOCIII|HALP2 HGNC:610|MIM:107720|Ensembl:ENSG00000110245|HPRD:00132|Vega:OTTHUMG00000046115 11 11q23.3 apolipoprotein C-III protein-coding APOC3 apolipoprotein C-III O apo-CIII|apoC-III|apolipoprotein C3 20121230 -9606 346 APOC4 - APO-CIV|APOC-IV HGNC:611|MIM:600745|Ensembl:ENSG00000224916|Ensembl:ENSG00000267467|HPRD:02848|Vega:OTTHUMG00000180845 19 19q13.2 apolipoprotein C-IV protein-coding APOC4 apolipoprotein C-IV O apolipoprotein C4 20121230 -9606 347 APOD - - HGNC:612|MIM:107740|Ensembl:ENSG00000189058|HPRD:00134|Vega:OTTHUMG00000155854 3 3q26.2-qter apolipoprotein D protein-coding APOD apolipoprotein D O apo-D 20121230 -9606 348 APOE - AD2|LDLCQ5|LPG HGNC:613|MIM:107741|Ensembl:ENSG00000130203|HPRD:00135|Vega:OTTHUMG00000128901 19 19q13.2 apolipoprotein E protein-coding APOE apolipoprotein E O apo-E|apolipoprotein E3 20121230 -9606 350 APOH - B2G1|B2GP1|BG HGNC:616|MIM:138700|Ensembl:ENSG00000091583|HPRD:00728|Vega:OTTHUMG00000179530 17 17q24.2 apolipoprotein H (beta-2-glycoprotein I) protein-coding APOH apolipoprotein H (beta-2-glycoprotein I) O APC inhibitor|B2GPI|activated protein C-binding protein|anticardiolipin cofactor|apo-H|beta(2)GPI|beta-2-glycoprotein 1 20121230 -9606 351 APP - AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2 HGNC:620|MIM:104760|Ensembl:ENSG00000142192|HPRD:00100|Vega:OTTHUMG00000078438 21 21q21.3 amyloid beta (A4) precursor protein protein-coding APP amyloid beta (A4) precursor protein O alzheimer disease amyloid protein|amyloid beta A4 protein|beta-amyloid peptide|cerebral vascular amyloid peptide|peptidase nexin-II|preA4|protease nexin-II 20121230 -9606 353 APRT - AMP|APRTD HGNC:626|MIM:102600|Ensembl:ENSG00000198931|HPRD:00029|Vega:OTTHUMG00000175454 16 16q24 adenine phosphoribosyltransferase protein-coding APRT adenine phosphoribosyltransferase O AMP diphosphorylase|AMP pyrophosphorylase|transphosphoribosidase 20121230 -9606 354 KLK3 - APS|KLK2A1|PSA|hK3 HGNC:6364|MIM:176820|Ensembl:ENSG00000142515|HPRD:01461 19 19q13.41 kallikrein-related peptidase 3 protein-coding KLK3 kallikrein-related peptidase 3 O P-30 antigen|gamma-seminoprotein|kallikrein-3|prostate specific antigen|prostate-specific antigen|semenogelase|seminin 20121230 -9606 355 FAS RP11-399O19.7 ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6 HGNC:11920|MIM:134637|Ensembl:ENSG00000026103|HPRD:00609|Vega:OTTHUMG00000018701 10 10q24.1 Fas (TNF receptor superfamily, member 6) protein-coding FAS Fas (TNF receptor superfamily, member 6) O APO-1 cell surface antigen|CD95 antigen|Delta Fas/APO-1/CD95|FAS 827dupA|FASLG receptor|Fas AMA|apoptosis antigen 1|apoptosis-mediating surface antigen FAS|tumor necrosis factor receptor superfamily member 6|tumor necrosis factor receptor superfamily, member 6 20121230 -9606 356 FASLG - ALPS1B|APT1LG1|CD178|CD95-L|CD95L|FASL|TNFSF6 HGNC:11936|MIM:134638|Ensembl:ENSG00000117560|HPRD:00610|Vega:OTTHUMG00000034841 1 1q23 Fas ligand (TNF superfamily, member 6) protein-coding FASLG Fas ligand (TNF superfamily, member 6) O APTL|CD95 ligand|apoptosis (APO-1) antigen ligand 1|apoptosis antigen ligand|fas antigen ligand|tumor necrosis factor (ligand) superfamily, member 6|tumor necrosis factor ligand superfamily member 6 20121230 -9606 357 SHROOM2 - APXL|HSAPXL HGNC:630|MIM:300103|Ensembl:ENSG00000146950|HPRD:02113|Vega:OTTHUMG00000021121 X Xp22.3 shroom family member 2 protein-coding SHROOM2 shroom family member 2 O APX homolog of Xenopus|apical-like protein|protein Shroom2 20121230 -9606 358 AQP1 - AQP-CHIP|CHIP28|CO HGNC:633|MIM:107776|Ensembl:ENSG00000240583|HPRD:00140|Vega:OTTHUMG00000023944 7 7p14 aquaporin 1 (Colton blood group) protein-coding AQP1 aquaporin 1 (Colton blood group) O Colton blood group|aquaporin 1 (channel-forming integral protein, 28kDa, CO blood group)|aquaporin-1|aquaporin-CHIP|channel-like integral membrane protein, 28-kDa|urine water channel|water channel protein for red blood cells and kidney proximal tubule 20121230 -9606 359 AQP2 - AQP-CD|WCH-CD HGNC:634|MIM:107777|Ensembl:ENSG00000167580|HPRD:00141|Vega:OTTHUMG00000169709 12 12q12-q13 aquaporin 2 (collecting duct) protein-coding AQP2 aquaporin 2 (collecting duct) O ADH water channel|AQP-2|aquaporin-2|aquaporin-CD|collecting duct water channel protein|water channel protein for renal collecting duct|water-channel aquaporin 2 20121230 -9606 360 AQP3 - AQP-3|GIL HGNC:636|MIM:600170|Ensembl:ENSG00000165272|HPRD:08970|Vega:OTTHUMG00000019769 9 9p13 aquaporin 3 (Gill blood group) protein-coding AQP3 aquaporin 3 (Gill blood group) O aquaglyceroporin-3|aquaporin 3 (GIL blood group)|aquaporin-3 20121230 -9606 361 AQP4 - HMIWC2|MIWC HGNC:637|MIM:600308|Ensembl:ENSG00000171885|HPRD:02631|Vega:OTTHUMG00000131955 18 18q11.2-q12.1 aquaporin 4 protein-coding AQP4 aquaporin 4 O WCH4|aquaporin type4|aquaporin-4|mercurial-insensitive water channel 20121230 -9606 362 AQP5 - AQP-5 HGNC:638|MIM:600442|Ensembl:ENSG00000161798|HPRD:02706|Vega:OTTHUMG00000169710 12 12q13 aquaporin 5 protein-coding AQP5 aquaporin 5 O aquaporin-5 20121230 -9606 363 AQP6 - AQP2L|KID HGNC:639|MIM:601383|Ensembl:ENSG00000086159|HPRD:03226|Vega:OTTHUMG00000133548 12 12q13 aquaporin 6, kidney specific protein-coding AQP6 aquaporin 6, kidney specific O AQP-6|aquaporin 2-like, kidney specific|aquaporin-6|aquaporin-6, kidney specific|hKID|kidney-specific aquaporin 20121230 -9606 364 AQP7 RP11-311H10.6 AQP7L|AQP9|AQPap|GLYCQTL HGNC:640|MIM:602974|Ensembl:ENSG00000165269|HPRD:04277|Vega:OTTHUMG00000019773 9 9p13 aquaporin 7 protein-coding AQP7 aquaporin 7 O AQP-7|aquaglyceroporin-7|aquaporin adipose|aquaporin-7 20121230 -9606 366 AQP9 - AQP-9|HsT17287|SSC1 HGNC:643|MIM:602914|Ensembl:ENSG00000103569|HPRD:04223|Vega:OTTHUMG00000132631 15 15q aquaporin 9 protein-coding AQP9 aquaporin 9 O aquaglyceroporin-9|aquaporin-9|small solute channel 1 20121230 -9606 367 AR RP11-383C12.1 AIS|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM HGNC:644|MIM:313700|Ensembl:ENSG00000169083|HPRD:02437|Vega:OTTHUMG00000021740 X Xq12 androgen receptor protein-coding AR androgen receptor O androgen nuclear receptor variant 2|dihydrotestosterone receptor|nuclear receptor subfamily 3 group C member 4 20121230 -9606 368 ABCC6 - ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 HGNC:57|MIM:603234|Ensembl:ENSG00000091262|HPRD:04453|Vega:OTTHUMG00000129967 16 16p13.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding ABCC6 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 O ATP-binding cassette sub-family C member 6|anthracycline resistance-associated protein|multi-specific organic anion transporter E|multidrug resistance-associated protein 6 20121230 -9606 369 ARAF RP1-230G1.1 A-RAF|ARAF1|PKS2|RAFA1 HGNC:646|MIM:311010|Ensembl:ENSG00000078061|HPRD:02405|Vega:OTTHUMG00000021446 X Xp11.4-p11.2 v-raf murine sarcoma 3611 viral oncogene homolog protein-coding ARAF v-raf murine sarcoma 3611 viral oncogene homolog O A-Raf proto-oncogene serine/threonine-protein kinase|Oncogene ARAF1|Ras-binding protein DA-Raf|proto-oncogene A-Raf-1|proto-oncogene Pks|serine/threonine-protein kinase A-Raf|v-raf murine sarcoma 3611 viral oncogene homolog 1 20121230 -9606 372 ARCN1 - COPD HGNC:649|MIM:600820|Ensembl:ENSG00000095139|HPRD:02893|Vega:OTTHUMG00000166340 11 11q23.3 archain 1 protein-coding ARCN1 archain 1 O archain vesicle transport protein 1|coatomer delta subunit|coatomer protein complex, subunit delta|coatomer protein delta-COP|coatomer subunit delta|delta-COP|delta-coat protein 20121230 -9606 373 TRIM23 - ARD1|ARFD1|RNF46 HGNC:660|MIM:601747|Ensembl:ENSG00000113595|HPRD:03449|Vega:OTTHUMG00000097802 5 5q12.3 tripartite motif containing 23 protein-coding TRIM23 tripartite motif containing 23 O ADP-ribosylation factor domain protein 1, 64kDa|ADP-ribosylation factor domain-containing protein 1|ARF domain protein 1|E3 ubiquitin-protein ligase TRIM23|GTP-binding protein ARD-1|RING finger protein 46|tripartite motif protein TRIM23|tripartite motif-containing 23|tripartite motif-containing protein 23 20121230 -9606 374 AREG - AR|CRDGF|SDGF HGNC:651|MIM:104640|Ensembl:ENSG00000109321|HPRD:00093|Vega:OTTHUMG00000130006 4 4q13.3 amphiregulin protein-coding AREG amphiregulin O colorectum cell-derived growth factor|schwannoma-derived growth factor 20121230 -9606 375 ARF1 - - HGNC:652|MIM:103180|Ensembl:ENSG00000143761|HPRD:00054|Vega:OTTHUMG00000037595 1 1q42 ADP-ribosylation factor 1 protein-coding ARF1 ADP-ribosylation factor 1 O - 20121230 -9606 377 ARF3 - - HGNC:654|MIM:103190|Ensembl:ENSG00000134287|HPRD:00056|Vega:OTTHUMG00000168080 12 12q13 ADP-ribosylation factor 3 protein-coding ARF3 ADP-ribosylation factor 3 O small GTP binding protein 20121230 -9606 378 ARF4 - ARF2 HGNC:655|MIM:601177|Ensembl:ENSG00000168374|HPRD:03107|Vega:OTTHUMG00000158601 3 3p21.2-p21.1 ADP-ribosylation factor 4 protein-coding ARF4 ADP-ribosylation factor 4 O ADP-ribosylation factor 2 20121230 -9606 379 ARL4D - ARF4L|ARL6 HGNC:656|MIM:600732|Ensembl:ENSG00000175906|HPRD:02842|Vega:OTTHUMG00000180881 17 17q21.31 ADP-ribosylation factor-like 4D protein-coding ARL4D ADP-ribosylation factor-like 4D O ADP-ribosylation factor-like 6|ADP-ribosylation factor-like protein 4D|ADP-ribosylation factor-like protein 4L 20121230 -9606 380 ARF4P1 - ARF4P HGNC:657 9 9q34 ADP-ribosylation factor 4 pseudogene 1 pseudo ARF4P1 ADP-ribosylation factor 4 pseudogene 1 O - 20121230 -9606 381 ARF5 - - HGNC:658|MIM:103188|Ensembl:ENSG00000004059|HPRD:00055|Vega:OTTHUMG00000023246 7 7q31.3 ADP-ribosylation factor 5 protein-coding ARF5 ADP-ribosylation factor 5 O - 20121230 -9606 382 ARF6 - - HGNC:659|MIM:600464|Ensembl:ENSG00000165527|HPRD:02714|Vega:OTTHUMG00000140296 14 14q21.3 ADP-ribosylation factor 6 protein-coding ARF6 ADP-ribosylation factor 6 O - 20121230 -9606 383 ARG1 - - HGNC:663|MIM:608313|Ensembl:ENSG00000118520|HPRD:01947|Vega:OTTHUMG00000015566 6 6q23 arginase, liver protein-coding ARG1 arginase, liver O arginase-1|liver-type arginase|type I arginase 20121230 -9606 384 ARG2 - - HGNC:664|MIM:107830|Ensembl:ENSG00000081181|HPRD:00143|Vega:OTTHUMG00000171807 14 14q24.1 arginase, type II protein-coding ARG2 arginase, type II O L-arginine amidinohydrolase|L-arginine ureahydrolase|arginase 2|arginase-2, mitochondrial|kidney arginase|kidney-type arginase|non-hepatic arginase|nonhepatic arginase|type II arginase 20121230 -9606 387 RHOA - ARH12|ARHA|RHO12|RHOH12 HGNC:667|MIM:165390|Ensembl:ENSG00000067560|HPRD:01323|Vega:OTTHUMG00000156838 3 3p21.3 ras homolog family member A protein-coding RHOA ras homolog family member A O Aplysia ras-related homolog 12|h12|oncogene RHO H12|ras homolog gene family, member A|rho cDNA clone 12|small GTP binding protein RhoA|transforming protein RhoA 20121230 -9606 388 RHOB - ARH6|ARHB|MST081|MSTP081|RHOH6 HGNC:668|MIM:165370|Ensembl:ENSG00000143878|HPRD:01321|Vega:OTTHUMG00000090755 2 2p24 ras homolog family member B protein-coding RHOB ras homolog family member B O Aplysia RAS-related homolog 6|h6|oncogene RHO H6|ras homolog gene family, member B|rho cDNA clone 6|rho-related GTP-binding protein RhoB 20121230 -9606 389 RHOC RP11-426L16.4 ARH9|ARHC|H9|RHOH9 HGNC:669|MIM:165380|Ensembl:ENSG00000155366|HPRD:01322|Vega:OTTHUMG00000011905 1 1p13.1 ras homolog family member C protein-coding RHOC ras homolog family member C O RAS-related homolog 9|oncogene RHO H9|ras homolog gene family, member C|rho cDNA clone 9|rho-related GTP-binding protein RhoC|rhoC GTPase|small GTP binding protein RhoC 20121230 -9606 390 RND3 - ARHE|Rho8|RhoE|memB HGNC:671|MIM:602924|Ensembl:ENSG00000115963|HPRD:04233|Vega:OTTHUMG00000131859 2 2q23.3 Rho family GTPase 3 protein-coding RND3 Rho family GTPase 3 O protein MemB|ras homolog gene family, member E|rho-related GTP-binding protein Rho8|rho-related GTP-binding protein RhoE|small GTP binding protein Rho8 20121230 -9606 391 RHOG - ARHG HGNC:672|MIM:179505|Ensembl:ENSG00000177105|HPRD:01537|Vega:OTTHUMG00000012287 11 11p15.5-p15.4 ras homolog family member G protein-coding RHOG ras homolog family member G O ras homolog gene family, member G (rho G)|rho-related GTP-binding protein RhoG 20121230 -9606 392 ARHGAP1 - CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP HGNC:673|MIM:602732|Ensembl:ENSG00000175220|HPRD:04108|Vega:OTTHUMG00000166567 11 11p11.2 Rho GTPase activating protein 1 protein-coding ARHGAP1 Rho GTPase activating protein 1 O CDC42 GTPase-activating protein|GTPase-activating protein rhoGAP|GTPase-activating protein rhoOGAP|GTPase-activating protein, Rho, 1|rho GTPase-activating protein 1|rho-related small GTPase protein activator|rho-type GTPase-activating protein 1 20121230 -9606 393 ARHGAP4 - C1|RGC1|RhoGAP4|SrGAP4|p115 HGNC:674|MIM:300023|Ensembl:ENSG00000089820|HPRD:02063|Vega:OTTHUMG00000024226 X Xq28 Rho GTPase activating protein 4 protein-coding ARHGAP4 Rho GTPase activating protein 4 O Rho-GAP hematopoietic protein C1|rho GTPase-activating protein 4|rho-type GTPase-activating protein 4 20121230 -9606 394 ARHGAP5 - GFI2|RhoGAP5|p190-B|p190BRhoGAP HGNC:675|MIM:602680|Ensembl:ENSG00000100852|HPRD:04060|Vega:OTTHUMG00000170589 14 14q12 Rho GTPase activating protein 5 protein-coding ARHGAP5 Rho GTPase activating protein 5 O growth factor independent 2|p100 RasGAP-associated p105 protein|p105 RhoGAP|rho GTPase-activating protein 5|rho-type GTPase-activating protein 5 20121230 -9606 395 ARHGAP6 - RHOGAP6|RHOGAPX-1 HGNC:676|MIM:300118|Ensembl:ENSG00000047648|HPRD:02124|Vega:OTTHUMG00000021134 X Xp22.3 Rho GTPase activating protein 6 protein-coding ARHGAP6 Rho GTPase activating protein 6 O Rho-type GTPase-activating protein RhoGAPX-1|rho GTPase-activating protein 6|rho-type GTPase-activating protein 6 20121230 -9606 396 ARHGDIA - GDIA1|RHOGDI|RHOGDI-1 HGNC:678|MIM:601925|Ensembl:ENSG00000141522|HPRD:03565|Vega:OTTHUMG00000178352 17 17q25.3 Rho GDP dissociation inhibitor (GDI) alpha protein-coding ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha O rho GDI 1|rho GDP-dissociation inhibitor 1|rho-GDI alpha 20121230 -9606 397 ARHGDIB - D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 HGNC:679|MIM:602843|Ensembl:ENSG00000111348|HPRD:04162|Vega:OTTHUMG00000168742 12 12p12.3 Rho GDP dissociation inhibitor (GDI) beta protein-coding ARHGDIB Rho GDP dissociation inhibitor (GDI) beta O Rho GDI 2|rho GDP-dissociation inhibitor 2|rho-GDI beta 20121230 -9606 398 ARHGDIG LA16c-314G4.1 RHOGDI-3 HGNC:680|MIM:602844|Ensembl:ENSG00000242173|HPRD:04163|Vega:OTTHUMG00000064892 16 16p13.3 Rho GDP dissociation inhibitor (GDI) gamma protein-coding ARHGDIG Rho GDP dissociation inhibitor (GDI) gamma O RhoGDI gamma|rho GDI 3|rho GDP-dissociation inhibitor 3|rho-GDI gamma 20121230 -9606 399 RHOH - ARHH|TTF HGNC:686|MIM:602037|Ensembl:ENSG00000168421|HPRD:03616|Vega:OTTHUMG00000099373 4 4p13 ras homolog family member H protein-coding RHOH ras homolog family member H O GTP-binding protein TTF|TTF, translocation three four|ras homolog gene family, member H|rho-related GTP-binding protein RhoH|translocation three four protein 20121230 -9606 400 ARL1 - ARFL1 HGNC:692|MIM:603425|Ensembl:ENSG00000120805|HPRD:04574|Vega:OTTHUMG00000170271 12 12q23.2 ADP-ribosylation factor-like 1 protein-coding ARL1 ADP-ribosylation factor-like 1 O ADP-ribosylation factor-like protein 1 20121230 -9606 401 PHOX2A - ARIX|CFEOM2|FEOM2|NCAM2|PMX2A HGNC:691|MIM:602753|Ensembl:ENSG00000165462|HPRD:04129|Vega:OTTHUMG00000167899 11 11q13.2 paired-like homeobox 2a protein-coding PHOX2A paired-like homeobox 2a O ARIX1 homeodomain protein|aristaless homeobox homolog|aristaless homeobox protein homolog|arix homeodomain protein|paired mesoderm homeobox protein 2A 20121230 -9606 402 ARL2 - ARFL2 HGNC:693|MIM:601175|Ensembl:ENSG00000213465|HPRD:11869|Vega:OTTHUMG00000165728 11 11q13 ADP-ribosylation factor-like 2 protein-coding ARL2 ADP-ribosylation factor-like 2 O ADP-ribosylation factor-like protein 2 20121230 -9606 403 ARL3 RP11-47A8.3 ARFL3 HGNC:694|MIM:604695|Ensembl:ENSG00000138175|HPRD:05260|Vega:OTTHUMG00000018965 10 10q23.3 ADP-ribosylation factor-like 3 protein-coding ARL3 ADP-ribosylation factor-like 3 O ADP-ribosylation factor-like protein 3|ARF-like 3 20121230 -9606 405 ARNT - HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 HGNC:700|MIM:126110|Ensembl:ENSG00000143437|HPRD:00524|Vega:OTTHUMG00000035011 1 1q21 aryl hydrocarbon receptor nuclear translocator protein-coding ARNT aryl hydrocarbon receptor nuclear translocator O class E basic helix-loop-helix protein 2|dioxin receptor, nuclear translocator|hypoxia-inducible factor 1, beta subunit 20121230 -9606 406 ARNTL - BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 HGNC:701|MIM:602550|Ensembl:ENSG00000133794|HPRD:03973|Vega:OTTHUMG00000150623 11 11p15 aryl hydrocarbon receptor nuclear translocator-like protein-coding ARNTL aryl hydrocarbon receptor nuclear translocator-like O ARNT-like protein 1, brain and muscle|PAS domain-containing protein 3|aryl hydrocarbon receptor nuclear translocator-like protein 1|bHLH-PAS protein JAP3|basic-helix-loop-helix-PAS orphan MOP3|basic-helix-loop-helix-PAS protein MOP3|brain and muscle ARNT-like 1|class E basic helix-loop-helix protein 5|member of PAS protein 3|member of PAS superfamily 3 20121230 -9606 407 ARR3 RP13-26D14.6 ARRX HGNC:710|MIM:301770|Ensembl:ENSG00000120500|HPRD:02358|Vega:OTTHUMG00000021768 X Xcen-q21 arrestin 3, retinal (X-arrestin) protein-coding ARR3 arrestin 3, retinal (X-arrestin) O C-arrestin|X-arrestin|arrestin 4|arrestin-C|cArr|cone arrestin|retinal cone arrestin-3 20121230 -9606 408 ARRB1 - ARB1|ARR1 HGNC:711|MIM:107940|Ensembl:ENSG00000137486|HPRD:00146|Vega:OTTHUMG00000165444 11 11q13 arrestin, beta 1 protein-coding ARRB1 arrestin, beta 1 O arrestin 2|beta-arrestin-1 20121230 -9606 409 ARRB2 - ARB2|ARR2|BARR2 HGNC:712|MIM:107941|Ensembl:ENSG00000141480|HPRD:00147|Vega:OTTHUMG00000090759 17 17p13 arrestin, beta 2 protein-coding ARRB2 arrestin, beta 2 O arrestin 3|arrestin beta-2|beta-arrestin-2 20121230 -9606 410 ARSA - MLD HGNC:713|MIM:607574|Ensembl:ENSG00000100299|HPRD:09617|Vega:OTTHUMG00000150180 22 22q13.33 arylsulfatase A protein-coding ARSA arylsulfatase A O ASA|cerebroside-sulfatase 20121230 -9606 411 ARSB - ASB|G4S|MPS6 HGNC:714|MIM:611542|Ensembl:ENSG00000113273|HPRD:08358|Vega:OTTHUMG00000108129 5 5q14.1 arylsulfatase B protein-coding ARSB arylsulfatase B O N-acetylgalactosamine-4-sulfatase 20121230 -9606 412 STS - ARSC|ARSC1|ASC|ES|SSDD|XLI HGNC:11425|MIM:300747|Ensembl:ENSG00000101846|HPRD:02389|Vega:OTTHUMG00000021102 X Xp22.32 steroid sulfatase (microsomal), isozyme S protein-coding STS steroid sulfatase (microsomal), isozyme S O arylsulfatase C|estrone sulfatase|steryl-sulfatase|steryl-sulfate sulfohydrolase 20121230 -9606 413 ARSC2 - ARSC HGNC:716|MIM:301780 X Xpter-p22.32 arylsulfatase C, isozyme F unknown ARSC2 arylsulfatase C, isozyme F O - 20080828 -9606 414 ARSD - ASD HGNC:717|MIM:300002|Ensembl:ENSG00000006756|HPRD:02048|Vega:OTTHUMG00000021077 X Xp22.3 arylsulfatase D protein-coding ARSD arylsulfatase D O - 20121230 -9606 415 ARSE - ASE|CDPX|CDPX1|CDPXR HGNC:719|MIM:300180|Ensembl:ENSG00000157399|HPRD:02171|Vega:OTTHUMG00000137358 X Xp22.3 arylsulfatase E (chondrodysplasia punctata 1) protein-coding ARSE arylsulfatase E (chondrodysplasia punctata 1) O arylsulfatase E|chondrodysplasia punctata 1 20121230 -9606 416 ARSF - ASF HGNC:721|MIM:300003|Ensembl:ENSG00000062096|HPRD:02049|Vega:OTTHUMG00000021081 X Xp22.3 arylsulfatase F protein-coding ARSF arylsulfatase F O - 20121230 -9606 417 ART1 - ART2|ARTC1|CD296|RT6 HGNC:723|MIM:601625|Ensembl:ENSG00000129744|HPRD:03377|Vega:OTTHUMG00000011845 11 11p15 ADP-ribosyltransferase 1 protein-coding ART1 ADP-ribosyltransferase 1 O ADP-ribosyltransferase 2|ADP-ribosyltransferase C2 and C3 toxin-like 1|GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1|mono(ADP-ribosyl)transferase 1 20121230 -9606 418 ART2P - ART1P|RT6 HGNC:724 11 11q13 ADP-ribosyltransferase 2 (RT6 antigen homolog, rat), pseudogene pseudo ART2P ADP-ribosyltransferase 2 (RT6 antigen homolog, rat), pseudogene O - 20121230 -9606 419 ART3 - ARTC3 HGNC:725|MIM:603086|Ensembl:ENSG00000156219|HPRD:04363|Vega:OTTHUMG00000130110 4 4q21.1|4p15.1-p14 ADP-ribosyltransferase 3 protein-coding ART3 ADP-ribosyltransferase 3 O ADP-ribosyltransferase C2 and C3 toxin-like 3|NAD(P)(+)--arginine ADP-ribosyltransferase 3|ecto-ADP-ribosyltransferase 3|mono(ADP-ribosyl)transferase 3|mono-ADP-ribosyltransferase 20121230 -9606 420 ART4 - ARTC4|CD297|DO|DOK1 HGNC:726|MIM:110600|Ensembl:ENSG00000111339|HPRD:04364|Vega:OTTHUMG00000168738 12 12p13-p12 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding ART4 ADP-ribosyltransferase 4 (Dombrock blood group) O ADP-ribosyltransferase 4 (DO blood group)|ADP-ribosyltransferase C2 and C3 toxin-like 4|Dombrock blood group carrier molecule|NAD(P)(+)--arginine ADP-ribosyltransferase 4|ecto-ADP-ribosyltransferase 4|mono(ADP-ribosyl)transferase 4|mono-ADP-ribosyltransferase 4 20121230 -9606 421 ARVCF - - HGNC:728|MIM:602269|Ensembl:ENSG00000099889|HPRD:03778|Vega:OTTHUMG00000030426 22 22q11.21 armadillo repeat gene deleted in velocardiofacial syndrome protein-coding ARVCF armadillo repeat gene deleted in velocardiofacial syndrome O armadillo repeat protein deleted in velo-cardio-facial syndrome 20121230 -9606 424 ARVD3 - ARVD2 HGNC:731|MIM:602086 14 14q12-q22 arrhythmogenic right ventricular dysplasia 3 unknown ARVD3 arrhythmogenic right ventricular dysplasia 3 O - 20120622 -9606 425 ARVD4 - - HGNC:732|MIM:602087 2 2q32.1-q32.3 arrhythmogenic right ventricular dysplasia 4 unknown ARVD4 arrhythmogenic right ventricular dysplasia 4 O - 20120622 -9606 427 ASAH1 HSD33 AC|ACDase|ASAH|PHP|PHP32|SMAPME HGNC:735|MIM:613468|Ensembl:ENSG00000104763|HPRD:01969|Vega:OTTHUMG00000096997 8 8p22 N-acylsphingosine amidohydrolase (acid ceramidase) 1 protein-coding ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1 O acid CDase|acid ceramidase|acylsphingosine deacylase|putative 32 kDa heart protein 20121230 -9606 429 ASCL1 - ASH1|HASH1|MASH1|bHLHa46 HGNC:738|MIM:100790|Ensembl:ENSG00000139352|HPRD:00011|Vega:OTTHUMG00000169967 12 12q23.2 achaete-scute complex homolog 1 (Drosophila) protein-coding ASCL1 achaete-scute complex homolog 1 (Drosophila) O ASH-1|achaete scute protein|achaete-scute complex-like 1|achaete-scute homolog 1|class A basic helix-loop-helix protein 46 20121230 -9606 430 ASCL2 - ASH2|HASH2|MASH2|bHLHa45 HGNC:739|MIM:601886|Ensembl:ENSG00000183734|HPRD:03533|Vega:OTTHUMG00000009648 11 11p15.5 achaete-scute complex homolog 2 (Drosophila) protein-coding ASCL2 achaete-scute complex homolog 2 (Drosophila) O ASH-2|achaete-scute complex-like 2|achaete-scute homolog 2|class A basic helix-loop-helix protein 45|mammalian achaete/scute homologue 2 20121230 -9606 431 ASD1 - - HGNC:741|MIM:108800 5 5p15.31 atrial septal defect 1 unknown ASD1 atrial septal defect 1 O - 20120622 -9606 432 ASGR1 - ASGPR|ASGPR1|CLEC4H1|HL-1 HGNC:742|MIM:108360|Ensembl:ENSG00000141505|HPRD:00151|Vega:OTTHUMG00000102159 17 17p13.2 asialoglycoprotein receptor 1 protein-coding ASGR1 asialoglycoprotein receptor 1 O C-type lectin domain family 4 member H1|hepatic lectin H1 20121230 -9606 433 ASGR2 - ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2 HGNC:743|MIM:108361|Ensembl:ENSG00000161944|HPRD:00152|Vega:OTTHUMG00000102158 17 17p asialoglycoprotein receptor 2 protein-coding ASGR2 asialoglycoprotein receptor 2 O C-type lectin domain family 4 member H2|HBxAg-binding protein|hepatic lectin H2 20121230 -9606 434 ASIP - AGSW|AGTI|AGTIL|ASP|SHEP9 HGNC:745|MIM:600201|Ensembl:ENSG00000101440|HPRD:02562|Vega:OTTHUMG00000032289 20 20q11.2-q12 agouti signaling protein protein-coding ASIP agouti signaling protein O agouti signaling protein, nonagouti homolog|agouti switch protein|agouti-signaling protein|nonagouti homolog 20121230 -9606 435 ASL - ASAL HGNC:746|MIM:608310|Ensembl:ENSG00000126522|HPRD:01948|Vega:OTTHUMG00000022876 7 7q11.21 argininosuccinate lyase protein-coding ASL argininosuccinate lyase O argininosuccinase|arginosuccinase 20121230 -9606 436 ASLP1 - ASLL HGNC:747 22 22q11.23 argininosuccinate lyase pseudogene 1 pseudo ASLP1 argininosuccinate lyase pseudogene 1 O - 20121230 -9606 437 ASMD - ASOD HGNC:749|MIM:107250 4 4q28-q31 anterior segment mesenchymal dysgenesis unknown ASMD anterior segment mesenchymal dysgenesis O - 20110714 -9606 438 ASMT RP13-297E16.2 ASMTY|HIOMT|HIOMTY HGNC:750|MIM:300015|MIM:402500|Ensembl:ENSG00000196433|HPRD:02058|Vega:OTTHUMG00000021065 X|Y Xp22.3 or Yp11.3 acetylserotonin O-methyltransferase protein-coding ASMT acetylserotonin O-methyltransferase O acetylserotonin N-methyltransferase|acetylserotonin methyltransferase (Y chromosome)|hydroxyindole O-methyltransferase 20121230 -9606 439 ASNA1 - ARSA-I|ARSA1|ASNA-I|GET3|TRC40|hASNA-I HGNC:752|MIM:601913|Ensembl:ENSG00000198356|HPRD:03555|Vega:OTTHUMG00000180355 19 19q13.3 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) protein-coding ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) O ATPase ASNA1|arsenical pump-driving ATPase|arsenite-stimulated ATPase|golgi to ER traffic 3 homolog|transmembrane domain recognition complex 40 kDa ATPase subunit|transmembrane domain recognition complex, 40kDa 20121230 -9606 440 ASNS - TS11 HGNC:753|MIM:108370|Ensembl:ENSG00000070669|HPRD:00153|Vega:OTTHUMG00000022892 7 7q21.3 asparagine synthetase (glutamine-hydrolyzing) protein-coding ASNS asparagine synthetase (glutamine-hydrolyzing) O TS11 cell cycle control protein|asparagine synthetase [glutamine-hydrolyzing]|glutamine-dependent asparagine synthetase 20121230 -9606 442 ASNSP2 - ASNSL2 HGNC:755 21 21p11.2 asparagine synthetase pseudogene 2 pseudo ASNSP2 asparagine synthetase pseudogene 2 O - 20121230 -9606 443 ASPA - ACY2|ASP HGNC:756|MIM:608034|Ensembl:ENSG00000108381|HPRD:02033|Vega:OTTHUMG00000090655 17 17p13.3 aspartoacylase protein-coding ASPA aspartoacylase O ACY-2|aminoacylase 2|aminoacylase-2 20121230 -9606 444 ASPH - AAH|BAH|CASQ2BP1|HAAH|JCTN|junctin HGNC:757|MIM:600582|Ensembl:ENSG00000198363|HPRD:08996|Vega:OTTHUMG00000164375 8 8q12.1 aspartate beta-hydroxylase protein-coding ASPH aspartate beta-hydroxylase O A beta H-J-J|ASP beta-hydroxylase|aspartyl/asparaginyl beta-hydroxylase|aspartyl/asparaginyl-beta-hydroxylase|cardiac junctin|humbug|junctate|peptide-aspartate beta-dioxygenase 20121230 -9606 445 ASS1 RP11-618A20.2 ASS|CTLN1 HGNC:758|MIM:603470|Ensembl:ENSG00000130707|HPRD:04590|Vega:OTTHUMG00000020806 9 9q34.1 argininosuccinate synthase 1 protein-coding ASS1 argininosuccinate synthase 1 O argininosuccinate synthase|argininosuccinate synthetase 1|citrulline--aspartate ligase|citrulline-aspartate ligase 20121230 -9606 447 ASS1P2 - ASSP2 HGNC:765 2 2p22.1 argininosuccinate synthetase 1 pseudogene 2 pseudo ASS1P2 argininosuccinate synthetase 1 pseudogene 2 O - 20121230 -9606 449 ASS1P4 - ASSP4 HGNC:767 X Xp22.33 argininosuccinate synthetase 1 pseudogene 4 pseudo ASS1P4 argininosuccinate synthetase 1 pseudogene 4 O - 20121230 -9606 450 ASS1P5 - ASSP5 HGNC:768 X Xq23 argininosuccinate synthetase 1 pseudogene 5 pseudo ASS1P5 argininosuccinate synthetase 1 pseudogene 5 O - 20121230 -9606 451 ASS1P6 - ASSP6 HGNC:769 Y Yq11.21 argininosuccinate synthetase 1 pseudogene 6 pseudo ASS1P6 argininosuccinate synthetase 1 pseudogene 6 O - 20121230 -9606 453 ASS1P8 - ASSP8 HGNC:771 4 4q31.22 argininosuccinate synthetase 1 pseudogene 8 pseudo ASS1P8 argininosuccinate synthetase 1 pseudogene 8 O - 20121230 -9606 454 ASS1P9 - ASSP9 HGNC:772 5 5q11.2 argininosuccinate synthetase 1 pseudogene 9 pseudo ASS1P9 argininosuccinate synthetase 1 pseudogene 9 O - 20121230 -9606 455 ASS1P10 - ASSP10 HGNC:760 5 5q32 argininosuccinate synthetase 1 pseudogene 10 pseudo ASS1P10 argininosuccinate synthetase 1 pseudogene 10 O - 20121230 -9606 459 ASS1P14 - ASSP14 HGNC:764 12 12p11.21 argininosuccinate synthetase 1 pseudogene 14 pseudo ASS1P14 argininosuccinate synthetase 1 pseudogene 14 O - 20121230 -9606 460 ASTN1 - ASTN HGNC:773|MIM:600904|Ensembl:ENSG00000152092|HPRD:09019|Vega:OTTHUMG00000035041 1 1q25.2 astrotactin 1 protein-coding ASTN1 astrotactin 1 O astrotactin-1 20121230 -9606 462 SERPINC1 PRO0309 AT3|AT3D|ATIII|THPH7 HGNC:775|MIM:107300|Ensembl:ENSG00000117601|HPRD:00122|Vega:OTTHUMG00000037276 1 1q25.1 serpin peptidase inhibitor, clade C (antithrombin), member 1 protein-coding SERPINC1 serpin peptidase inhibitor, clade C (antithrombin), member 1 O antithrombin III|antithrombin-III|serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1|serine-cysteine proteinase inhibitor clade C member 1|serpin C1 20121230 -9606 463 ZFHX3 - ATBF1|ATBT|ZNF927 HGNC:777|MIM:104155|Ensembl:ENSG00000140836|HPRD:00075|Vega:OTTHUMG00000137599 16 16q22.3 zinc finger homeobox 3 protein-coding ZFHX3 zinc finger homeobox 3 O AT motif-binding factor 1|AT-binding transcription factor 1|ZFH-3|alpha-fetoprotein enhancer binding protein|alpha-fetoprotein enhancer-binding protein|zinc finger homeobox protein 3|zinc finger homeodomain protein 3 20121230 -9606 465 ATD - ATD1 HGNC:780|MIM:208500 15 15q13 asphixiating thoracic dystrophy (chondroectodermal dysplasia-like syndrome) unknown ATD asphixiating thoracic dystrophy (chondroectodermal dysplasia-like syndrome) O - 20120622 -9606 466 ATF1 - EWS-ATF1|FUS/ATF-1|TREB36 HGNC:783|MIM:123803|Ensembl:ENSG00000123268|HPRD:00440|Vega:OTTHUMG00000169482 12 12q13 activating transcription factor 1 protein-coding ATF1 activating transcription factor 1 O cAMP-dependent transcription factor ATF-1|cyclic AMP-dependent transcription factor ATF-1 20121230 -9606 467 ATF3 RP11-338C15.1 - HGNC:785|MIM:603148|Ensembl:ENSG00000162772|HPRD:04395|Vega:OTTHUMG00000036747 1 1q32.3 activating transcription factor 3 protein-coding ATF3 activating transcription factor 3 O cAMP-dependent transcription factor ATF-3|cyclic AMP-dependent transcription factor ATF-3 20121230 -9606 468 ATF4 - CREB-2|CREB2|TAXREB67|TXREB HGNC:786|MIM:604064|Ensembl:ENSG00000128272|HPRD:06817|Vega:OTTHUMG00000151099 22 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) protein-coding ATF4 activating transcription factor 4 (tax-responsive enhancer element B67) O DNA-binding protein TAXREB67|cAMP response element-binding protein 2|cAMP-dependent transcription factor ATF-4|cAMP-responsive element-binding protein 2|cyclic AMP-dependent transcription factor ATF-4|cyclic AMP-responsive element-binding protein 2|tax-responsive enhancer element-binding protein 67 20121230 -9606 469 ATF4P1 - ATF4P|TAXREB67P|TXREBP HGNC:789 X Xq28 activating transcription factor 4 pseudogene 1 pseudo ATF4P1 activating transcription factor 4 pseudogene 1 O - 20121230 -9606 470 ATHS - ALP HGNC:793|MIM:108725 19 19p13.3-p13.2 atherosclerosis susceptibility (lipoprotein associated) unknown ATHS atherosclerosis susceptibility (lipoprotein associated) O - 20120622 -9606 471 ATIC OK/SW-cl.86 AICAR|AICARFT|IMPCHASE|PURH HGNC:794|MIM:601731|Ensembl:ENSG00000138363|HPRD:03434|Vega:OTTHUMG00000133023 2 2q35 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase O 5-aminoimidazole-4-carboxamide-1-beta-D-ribonucleotide transformylase/inosinicase|AICAR formyltransferase/IMP cyclohydrolase bifunctional enzyme|AICARFT/IMPCHASE|bifunctional purine biosynthesis protein PURH|phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 20121230 -9606 472 ATM - AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 HGNC:795|MIM:607585|Ensembl:ENSG00000149311|HPRD:06347|Vega:OTTHUMG00000166480 11 11q22-q23 ataxia telangiectasia mutated protein-coding ATM ataxia telangiectasia mutated O A-T mutated|AT mutated|TEL1, telomere maintenance 1, homolog|serine-protein kinase ATM 20121230 -9606 473 RERE RP11-141M15.2 ARG|ARP|ATN1L|DNB1 HGNC:9965|MIM:605226|Ensembl:ENSG00000142599|HPRD:05566|Vega:OTTHUMG00000001765 1 1p36.23 arginine-glutamic acid dipeptide (RE) repeats protein-coding RERE arginine-glutamic acid dipeptide (RE) repeats O arginine-glutamic acid dipeptide repeats protein|atrophin 2|atrophin-1 like protein|atrophin-1 related protein|atrophin-1-like protein|atrophin-1-related protein 20121230 -9606 474 ATOH1 - ATH1|HATH1|MATH-1|bHLHa14 HGNC:797|MIM:601461|Ensembl:ENSG00000172238|HPRD:03270|Vega:OTTHUMG00000130972 4 4q22 atonal homolog 1 (Drosophila) protein-coding ATOH1 atonal homolog 1 (Drosophila) O class A basic helix-loop-helix protein 14|helix-loop-helix protein hATH-1|protein atonal homolog 1 20121230 -9606 475 ATOX1 - ATX1|HAH1 HGNC:798|MIM:602270|Ensembl:ENSG00000177556|HPRD:03779|Vega:OTTHUMG00000163499 5 5q32 ATX1 antioxidant protein 1 homolog (yeast) protein-coding ATOX1 ATX1 antioxidant protein 1 homolog (yeast) O copper transport protein ATOX1|metal transport protein ATX1 20121230 -9606 476 ATP1A1 RP4-655J12.1 - HGNC:799|MIM:182310|Ensembl:ENSG00000163399|HPRD:01662|Vega:OTTHUMG00000012109 1 1p21 ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide O Na(+)/K(+) ATPase alpha-1 subunit|Na+, K+ ATPase alpha subunit|Na+/K+ ATPase 1|Na, K-ATPase, alpha-A catalytic polypeptide|Na,K-ATPase alpha-1 subunit|Na,K-ATPase catalytic subunit alpha-A protein|sodium pump 1|sodium pump subunit alpha-1|sodium-potassium ATPase catalytic subunit alpha-1|sodium-potassium-ATPase, alpha 1 polypeptide|sodium/potassium-transporting ATPase subunit alpha-1 20121230 -9606 477 ATP1A2 RP11-536C5.4 FHM2|MHP2 HGNC:800|MIM:182340|Ensembl:ENSG00000018625|HPRD:01665|Vega:OTTHUMG00000024080 1 1q23.2 ATPase, Na+/K+ transporting, alpha 2 polypeptide protein-coding ATP1A2 ATPase, Na+/K+ transporting, alpha 2 polypeptide O Na(+)/K(+) ATPase alpha-2 subunit|Na+/K+ ATPase, alpha-A(+) catalytic polypeptide|Na+/K+ ATPase, alpha-B polypeptide|sodium pump subunit alpha-2|sodium-potassium ATPase catalytic subunit alpha-2|sodium/potassium-transporting ATPase alpha-2 chain|sodium/potassium-transporting ATPase subunit alpha-2 20121230 -9606 478 ATP1A3 - AHC2|DYT12|RDP HGNC:801|MIM:182350|Ensembl:ENSG00000105409|HPRD:01666|Vega:OTTHUMG00000137384 19 19q13.31 ATPase, Na+/K+ transporting, alpha 3 polypeptide protein-coding ATP1A3 ATPase, Na+/K+ transporting, alpha 3 polypeptide O Na(+)/K(+) ATPase alpha(III) subunit|Na(+)/K(+) ATPase alpha-3 subunit|Na+/K+ ATPase 3|sodium pump subunit alpha-3|sodium-potassium ATPase catalytic subunit alpha-3|sodium-potassium-ATPase, alpha 3 polypeptide|sodium/potassium-transporting ATPase alpha-3 chain|sodium/potassium-transporting ATPase subunit alpha-3 20121230 -9606 479 ATP12A - ATP1AL1 HGNC:13816|MIM:182360|Ensembl:ENSG00000075673|HPRD:01667|Vega:OTTHUMG00000016588 13 13q12.12|13q12.1-q12.3 ATPase, H+/K+ transporting, nongastric, alpha polypeptide protein-coding ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide O ATPase, Na+/K+ transporting, alpha polypeptide-like 1|non-gastric H(+)/K(+) ATPase alpha subunit|non-gastric H(+)/K(+) ATPase subunit alpha|potassium-transporting ATPase alpha chain 2|proton pump 20121230 -9606 480 ATP1A4 RP11-536C5.5 ATP1A1|ATP1AL2 HGNC:14073|MIM:607321|Ensembl:ENSG00000132681|HPRD:09541|Vega:OTTHUMG00000031609 1 1q23.2 ATPase, Na+/K+ transporting, alpha 4 polypeptide protein-coding ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide O ATPase, Na+/K+ transporting, alpha polypeptide-like 2|Na(+)/K(+) ATPase alpha-4 subunit|Na+/K+ ATPase 4|Na+/K+ ATPase, alpha-D polypeptide|Na,K-ATPase subunit alpha-C|sodium pump 4|sodium pump subunit alpha-4|sodium-potassium ATPase catalytic subunit alpha-4|sodium/potassium-transporting ATPase alpha-4 chain|sodium/potassium-transporting ATPase subunit alpha-4 20121230 -9606 481 ATP1B1 - ATP1B HGNC:804|MIM:182330|Ensembl:ENSG00000143153|HPRD:01663|Vega:OTTHUMG00000034590 1 1q24 ATPase, Na+/K+ transporting, beta 1 polypeptide protein-coding ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide O Beta 1-subunit of Na(+),K(+)-ATPase|Na, K-ATPase beta-1 polypeptide|adenosinetriphosphatase|sodium pump subunit beta-1|sodium-potassium ATPase subunit beta 1 (non-catalytic)|sodium/potassium-dependent ATPase beta-1 subunit|sodium/potassium-transporting ATPase beta-1 chain|sodium/potassium-transporting ATPase subunit beta-1 20121230 -9606 482 ATP1B2 - AMOG HGNC:805|MIM:182331|Ensembl:ENSG00000129244|HPRD:01664|Vega:OTTHUMG00000178018 17 17p13.1 ATPase, Na+/K+ transporting, beta 2 polypeptide protein-coding ATP1B2 ATPase, Na+/K+ transporting, beta 2 polypeptide O Na, K-ATPase beta-2 polypeptide|adhesion molecule on glia|sodium pump subunit beta-2|sodium-potassium ATPase subunit beta 2 (non-catalytic)|sodium/potassium-dependent ATPase beta-2 subunit|sodium/potassium-dependent ATPase subunit beta-2|sodium/potassium-transporting ATPase beta-2 chain|sodium/potassium-transporting ATPase subunit beta-2 20121230 -9606 483 ATP1B3 - ATPB-3|CD298 HGNC:806|MIM:601867|Ensembl:ENSG00000069849|HPRD:03521|Vega:OTTHUMG00000159081 3 3q23 ATPase, Na+/K+ transporting, beta 3 polypeptide protein-coding ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide O Na, K-ATPase beta-3 polypeptide|sodium pump subunit beta-3|sodium-potassium ATPase subunit beta 3 (non-catalytic)|sodium/potassium-dependent ATPase beta-3 subunit|sodium/potassium-dependent ATPase subunit beta-3|sodium/potassium-transporting ATPase beta-3 chain|sodium/potassium-transporting ATPase subunit beta-3 20121230 -9606 484 ATP1B3P1 - - HGNC:807 2 2p16.1 ATPase, Na+/K+ transporting, beta 3 pseudogene pseudo ATP1B3P1 ATPase, Na+/K+ transporting, beta 3 pseudogene O - 20121230 -9606 485 ATP1B1P1 - ATP1BL1 HGNC:809 4 4p13 ATPase, Na+/K+ transporting, beta 1 polypeptide pseudogene 1 pseudo ATP1B1P1 ATPase, Na+/K+ transporting, beta 1 polypeptide pseudogene 1 O - 20121230 -9606 486 FXYD2 - ATP1G1|HOMG2 HGNC:4026|MIM:601814|Ensembl:ENSG00000137731|HPRD:03487|Vega:OTTHUMG00000166990 11 11q23 FXYD domain containing ion transport regulator 2 protein-coding FXYD2 FXYD domain containing ion transport regulator 2 O ATPase, Na+/K+ transporting, gamma 1 polypeptide|Na(+)/K(+) ATPase subunit gamma|sodium pump gamma chain|sodium/potassium-transporting ATPase subunit gamma 20121230 -9606 487 ATP2A1 - ATP2A|SERCA1 HGNC:811|MIM:108730|Ensembl:ENSG00000196296|HPRD:00157|Vega:OTTHUMG00000131760 16 16p12.1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 protein-coding ATP2A1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 O SR Ca(2+)-ATPase 1|calcium pump 1|calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform|endoplasmic reticulum class 1/2 Ca(2+) ATPase|sarcoplasmic/endoplasmic reticulum calcium ATPase 1 20121230 -9606 488 ATP2A2 - ATP2B|DAR|DD|SERCA2 HGNC:812|MIM:108740|Ensembl:ENSG00000174437|HPRD:00161|Vega:OTTHUMG00000169327 12 12q24.11 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 protein-coding ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 O ATPase, Ca++ dependent, slow-twitch, cardiac muscle-2|SR Ca(2+)-ATPase 2|calcium pump 2|calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform|cardiac Ca2+ ATPase|endoplasmic reticulum class 1/2 Ca(2+) ATPase|sarcoplasmic/endoplasmic reticulum calcium ATPase 2 20121230 -9606 489 ATP2A3 - SERCA3 HGNC:813|MIM:601929|Ensembl:ENSG00000074370|HPRD:03568|Vega:OTTHUMG00000177674 17 17p13.3 ATPase, Ca++ transporting, ubiquitous protein-coding ATP2A3 ATPase, Ca++ transporting, ubiquitous O ATPase, Ca(2+)-transporting, ubiquitous|SR Ca(2+)-ATPase 3|adenosine triphosphatase, calcium|calcium pump 3|calcium-translocating P-type ATPase|sarco/endoplasmic reticulum Ca2+ -ATPase|sarcoplasmic/endoplasmic reticulum calcium ATPase 3 20121230 -9606 490 ATP2B1 - PMCA1|PMCA1kb HGNC:814|MIM:108731|Ensembl:ENSG00000070961|HPRD:00158|Vega:OTTHUMG00000169946 12 12q21.3 ATPase, Ca++ transporting, plasma membrane 1 protein-coding ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 O plasma membrane calcium pump|plasma membrane calcium-transporting ATPase 1 20121230 -9606 491 ATP2B2 - PMCA2|PMCA2a|PMCA2i HGNC:815|MIM:108733|Ensembl:ENSG00000157087|HPRD:00160|Vega:OTTHUMG00000128679 3 3p25.3 ATPase, Ca++ transporting, plasma membrane 2 protein-coding ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 O plasma membrane Ca(2+)-ATPase|plasma membrane Ca2+ pump 2|plasma membrane calcium ATPase|plasma membrane calcium pump|plasma membrane calcium-transporting ATPase 2 20121230 -9606 492 ATP2B3 - PMCA3|PMCA3a HGNC:816|MIM:300014|Ensembl:ENSG00000067842|HPRD:02057|Vega:OTTHUMG00000024202 X Xq28 ATPase, Ca++ transporting, plasma membrane 3 protein-coding ATP2B3 ATPase, Ca++ transporting, plasma membrane 3 O plasma membrane calcium ATPase|plasma membrane calcium pump|plasma membrane calcium-transporting ATPase 3 20121230 -9606 493 ATP2B4 - ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x HGNC:817|MIM:108732|Ensembl:ENSG00000058668|HPRD:00159|Vega:OTTHUMG00000035906 1 1q32.1 ATPase, Ca++ transporting, plasma membrane 4 protein-coding ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 O matrix-remodeling-associated protein 1|plasma membrane calcium-transporting ATPase 4|sarcolemmal calcium pump 20121230 -9606 495 ATP4A - ATP6A HGNC:819|MIM:137216|Ensembl:ENSG00000105675|HPRD:00668|Vega:OTTHUMG00000048106 19 19q13.1 ATPase, H+/K+ exchanging, alpha polypeptide protein-coding ATP4A ATPase, H+/K+ exchanging, alpha polypeptide O ATPase, H+/K+ transporting, alpha polypeptide|H(+)-K(+)-ATPase alpha subunit|gastric H(+)/K(+) ATPase subunit alpha|gastric H+/K+ ATPase alpha subunit|gastric H,K-ATPase alpha subunit|gastric H,K-ATPase catalytic subunit|gastric hydrogen-potassium ATPase|potassium-transporting ATPase alpha chain 1|proton pump 20121230 -9606 496 ATP4B RP11-230F18.4 ATP6B HGNC:820|MIM:137217|Ensembl:ENSG00000186009|HPRD:00669|Vega:OTTHUMG00000140234 13 13q34 ATPase, H+/K+ exchanging, beta polypeptide protein-coding ATP4B ATPase, H+/K+ exchanging, beta polypeptide O ATPase, H+/K+ transporting, beta polypeptide|gastric H(+)/K(+) ATPase subunit beta|gastric H+/K+ ATPase beta subunit|gastric hydrogen-potassium ATPase, beta|potassium-transporting ATPase beta chain|potassium-transporting ATPase subunit beta|proton pump beta chain 20121230 -9606 498 ATP5A1 - ATP5A|ATP5AL2|ATPM|MOM2|OMR|ORM|hATP1 HGNC:823|MIM:164360|Ensembl:ENSG00000152234|HPRD:01258|Vega:OTTHUMG00000132637 18 18q21 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle protein-coding ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle O ATP synthase alpha chain, mitochondrial|ATP synthase subunit alpha, mitochondrial|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 2, non-cardiac muscle-like 2|ATP sythase (F1-ATPase) alpha subunit|mitochondrial ATP synthetase, oligomycin-resistant 20121230 -9606 501 ALDH7A1 - ATQ1|EPD|PDE HGNC:877|MIM:107323|Ensembl:ENSG00000164904|HPRD:00124|Vega:OTTHUMG00000128942 5 5q31 aldehyde dehydrogenase 7 family, member A1 protein-coding ALDH7A1 aldehyde dehydrogenase 7 family, member A1 O 26g turgor protein homolog|P6c dehydrogenase|alpha-AASA dehydrogenase|alpha-aminoadipic semialdehyde dehydrogenase|antiquitin-1|betaine aldehyde dehydrogenase|delta1-piperideine-6-carboxylate dehydrogenase 20121230 -9606 504 ATP5A1P2 - ATP5AP2 HGNC:828 2 2q24.1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 2 pseudo ATP5A1P2 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 2 O - 20121230 -9606 506 ATP5B - ATPMB|ATPSB HGNC:830|MIM:102910|Ensembl:ENSG00000110955|HPRD:00044|Vega:OTTHUMG00000170291 12 12q13.13 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide protein-coding ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide O ATP synthase subunit beta, mitochondrial|mitochondrial ATP synthase beta subunit|mitochondrial ATP synthetase, beta subunit 20121230 -9606 507 ATP5BP1 - ATP5BL1|ATPMBL1|ATPSBL1 HGNC:831 2 2q11.2 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide pseudogene 1 pseudo ATP5BP1 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide pseudogene 1 O - 20121230 -9606 509 ATP5C1 RP11-401E9.1 ATP5C|ATP5CL1 HGNC:833|MIM:108729|Ensembl:ENSG00000165629|HPRD:00156|Vega:OTTHUMG00000017639 10 10p15.1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 protein-coding ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 O ATP synthase gamma chain, mitochondrial|ATP synthase subunit gamma, mitochondrial|F-ATPase gamma subunit|mitochondrial ATP synthase, gamma subunit 1 20121230 -9606 513 ATP5D - - HGNC:837|MIM:603150|Ensembl:ENSG00000099624|HPRD:04397|Vega:OTTHUMG00000180143 19 19p13.3 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit protein-coding ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit O ATP synthase subunit delta, mitochondrial|F-ATPase delta subunit|mitochondrial ATP synthase complex delta-subunit precusor|mitochondrial ATP synthase, delta subunit 20121230 -9606 514 ATP5E - ATPE|MC5DN3 HGNC:838|MIM:606153|Ensembl:ENSG00000124172|HPRD:05856|Vega:OTTHUMG00000032854 20 20q13.32 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit O ATP synthase subunit epsilon, mitochondrial|F(0)F(1)-ATPase|H(+)-transporting two-sector ATPase|mitochondrial ATP synthase epsilon chain|mitochondrial ATPase 20121230 -9606 515 ATP5F1 RP11-552M11.5 PIG47 HGNC:840|MIM:603270|Ensembl:ENSG00000116459|HPRD:04467|Vega:OTTHUMG00000011745 1 1p13.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 protein-coding ATP5F1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 O ATP synthase B chain, mitochondrial|ATP synthase subunit b, mitochondrial|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b|ATPase subunit b|H+-ATP synthase subunit b|cell proliferation-inducing protein 47 20121230 -9606 516 ATP5G1 - ATP5A|ATP5G HGNC:841|MIM:603192|Ensembl:ENSG00000159199|HPRD:04428|Vega:OTTHUMG00000160520 17 17q21.32 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) protein-coding ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) O ATP synthase lipid-binding protein, mitochondrial|ATP synthase proteolipid P1|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9)|ATPase protein 9|ATPase subunit 9|ATPase subunit C|mitochondrial ATP synthase, subunit 9|mitochondrial ATP synthase, subunit C 20121230 -9606 517 ATP5G2 PSEC0033 ATP5A HGNC:842|MIM:603193|Ensembl:ENSG00000135390|HPRD:04429|Vega:OTTHUMG00000133442 12 12q13.13 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) protein-coding ATP5G2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) O ATP synthase c subunit|ATP synthase lipid-binding protein, mitochondrial|ATP synthase proteolipid P2|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9)|ATPase protein 9|ATPase subunit C|mitochondrial ATP synthase, subunit C (subunit 9) 20121230 -9606 518 ATP5G3 - P3 HGNC:843|MIM:602736|Ensembl:ENSG00000154518|HPRD:04112|Vega:OTTHUMG00000132425 2 2q31.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) protein-coding ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) O ATP synthase lipid-binding protein, mitochondrial|ATP synthase proteolipid P3|ATP synthase subunit 9|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)|ATP synthase, mitochondrial, C subunit-3|ATPase protein 9|ATPase subunit C 20121230 -9606 520 ATP5G2P1 - ATP5GP1 HGNC:844 1 1q32.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 1 pseudo ATP5G2P1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 1 O - 20121230 -9606 521 ATP5I - ATP5K HGNC:846|MIM:601519|Ensembl:ENSG00000169020|HPRD:03308|Vega:OTTHUMG00000086929 4 4p16.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E protein-coding ATP5I ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E O ATP synthase e chain, mitochondrial|ATP synthase subunit e, mitochondrial|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E|ATPase subunit e|F1F0-ATP synthase, murine e subunit 20121230 -9606 522 ATP5J - ATP5|ATP5A|ATPM|CF6|F6 HGNC:847|MIM:603152|Ensembl:ENSG00000154723|HPRD:04399|Vega:OTTHUMG00000078442 21 21q21.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 protein-coding ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 O ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6|ATP synthase-coupling factor 6, mitochondrial|ATPase subunit F6|coupling factor 6|mitochondrial ATP synthase, coupling factor 6|mitochondrial ATP synthase, subunit F6|mitochondrial ATPase coupling factor 6|proliferation-inducing protein 36 20121230 -9606 523 ATP6V1A - ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1 HGNC:851|MIM:607027|Ensembl:ENSG00000114573|HPRD:06120|Vega:OTTHUMG00000159295 3 3q13.31 ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A protein-coding ATP6V1A ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A O ATPase, H+ transporting, lysosomal, subunit A1|H(+)-transporting two-sector ATPase, subunit A|H+-transporting ATPase chain A, vacuolar (VA68 type)|V-ATPase 69 kDa subunit 1|V-ATPase A subunit 1|V-ATPase subunit A|V-type proton ATPase catalytic subunit A|vacuolar ATP synthase catalytic subunit A, ubiquitous isoform|vacuolar ATPase isoform VA68|vacuolar proton pump alpha subunit 1|vacuolar proton pump subunit alpha 20121230 -9606 525 ATP6V1B1 - ATP6B1|RTA1B|VATB|VMA2|VPP3 HGNC:853|MIM:192132|Ensembl:ENSG00000116039|HPRD:01887|Vega:OTTHUMG00000129711 2 2p13.1 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 protein-coding ATP6V1B1 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 O H(+)-transporting two-sector ATPase, 58kD subunit|H+-ATPase beta 1 subunit|V-ATPase B1 subunit|V-ATPase subunit B 1|V-type proton ATPase subunit B, kidney isoform|endomembrane proton pump 58 kDa subunit|vacuolar proton pump 3|vacuolar proton pump subunit B 1|vacuolar proton pump, subunit 3 20121230 -9606 526 ATP6V1B2 - ATP6B1B2|ATP6B2|HO57|VATB|VPP3|Vma2 HGNC:854|MIM:606939|Ensembl:ENSG00000147416|HPRD:06088|Vega:OTTHUMG00000131073 8 8p21.3 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 protein-coding ATP6V1B2 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 O H+ transporting two-sector ATPase|V-ATPase B2 subunit|V-ATPase subunit B 2|V-type proton ATPase subunit B, brain isoform|endomembrane proton pump 58 kDa subunit|vacuolar H+-ATPase 56,000 subunit|vacuolar proton pump subunit B 2 20121230 -9606 527 ATP6V0C - ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 HGNC:855|MIM:108745|Ensembl:ENSG00000185883|HPRD:00162|Vega:OTTHUMG00000128865 16 16p13.3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c protein-coding ATP6V0C ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c O H(+)-transporting two-sector ATPase, 16 kDa subunit|V-ATPase 16 kDa proteolipid subunit|V-type proton ATPase 16 kDa proteolipid subunit|vacuolar ATP synthase 16 kDa proteolipid subunit|vacuolar H+ ATPase proton channel subunit|vacuolar proton pump 16 kDa proteolipid subunit 20121230 -9606 528 ATP6V1C1 - ATP6C|ATP6D|VATC|Vma5 HGNC:856|MIM:603097|Ensembl:ENSG00000155097|HPRD:04371|Vega:OTTHUMG00000164761 8 8q22.3 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 protein-coding ATP6V1C1 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 O H(+)-transporting two-sector ATPase, subunit C|H+ -ATPase C subunit|H+-transporting ATPase chain C, vacuolar|V-ATPase C subunit|V-ATPase subunit C 1|V-type proton ATPase subunit C 1|subunit C of vacuolar proton-ATPase V1 domain|vacuolar ATP synthase subunit C|vacuolar proton pump C subunit|vacuolar proton pump subunit C 1|vacuolar proton pump, 42-kD subunit|vacuolar proton-ATPase, subunit C, VI domain 20121230 -9606 529 ATP6V1E1 - ATP6E|ATP6E2|ATP6V1E|P31|Vma4 HGNC:857|MIM:108746|Ensembl:ENSG00000131100|HPRD:00163|Vega:OTTHUMG00000059320 22 22q11.1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 protein-coding ATP6V1E1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 O H(+)-transporting two-sector ATPase, 31kDa subunit|H+-transporting ATP synthase chain E, vacuolar|V-ATPase 31 kDa subunit|V-ATPase subunit E 1|V-ATPase, subunit E|V-type proton ATPase subunit E 1|vacuolar proton pump subunit E 1 20121230 -9606 533 ATP6V0B RP11-7O11.6 ATP6F|HATPL|VMA16 HGNC:861|MIM:603717|Ensembl:ENSG00000117410|HPRD:04759|Vega:OTTHUMG00000008298 1 1p32.3 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b protein-coding ATP6V0B ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b O H(+)-transporting two-sector ATPase, subunit F|V-ATPase 21 kDa proteolipid subunit|V-ATPase subunit c''|V-type proton ATPase 21 kDa proteolipid subunit|vacuolar ATP synthase 21 kDa proteolipid subunit|vacuolar proton pump 21 kDa proteolipid subunit|vacuolar proton pump, 21 kDa subunit 20121230 -9606 534 ATP6V1G2 DADB-26I14.6 ATP6G|ATP6G2|NG38|VMA10 HGNC:862|MIM:606853|Ensembl:ENSG00000213760|HPRD:06030|Vega:OTTHUMG00000166618 6 6p21.3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 protein-coding ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 O ATPase, H+ transporting, lysosomal (vacuolar proton pump)|H(+)-transporting two-sector ATPase, subunit G2|V-ATPase 13 kDa subunit 2|V-type proton ATPase subunit G 2|vacuolar ATP synthase subunit G 2|vacuolar proton pump G subunit 2 20121230 -9606 535 ATP6V0A1 - ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1 HGNC:865|MIM:192130|Ensembl:ENSG00000033627|HPRD:01886|Vega:OTTHUMG00000180238 17 17q21 ATPase, H+ transporting, lysosomal V0 subunit a1 protein-coding ATP6V0A1 ATPase, H+ transporting, lysosomal V0 subunit a1 O ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1A (110/116kD)|ATPase, H+ transporting, lysosomal non-catalytic accessory protein 1 (110/116kD)|H(+)-transporting two-sector ATPase, 116 kDa accessory protein A1|V-ATPase 116 kDa|V-type proton ATPase 116 kDa subunit a|V-type proton ATPase 116 kDa subunit a isoform 1|clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit|vacuolar adenosine triphosphatase subunit Ac116|vacuolar proton pump subunit 1|vacuolar proton pump, subunit 1|vacuolar proton translocating ATPase 116 kDa subunit A|vacuolar-type H(+)-ATPase 115 kDa subunit 20121230 -9606 537 ATP6AP1 XX-FW83563B9.4 16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3 HGNC:868|MIM:300197|Ensembl:ENSG00000071553|HPRD:02184|Vega:OTTHUMG00000033291 X Xq28 ATPase, H+ transporting, lysosomal accessory protein 1 protein-coding ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 O ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1|ATPase, H+ transporting, lysosomal interacting protein 1|H-ATPase subunit|V-ATPase Ac45 subunit|V-ATPase S1 accessory protein|V-ATPase subunit S1|V-type proton ATPase subunit S1|protein XAP-3|vacuolar proton pump subunit S1 20121230 -9606 538 ATP7A RP3-465G10.1 DSMAX|MK|MNK|SMAX3 HGNC:869|MIM:300011|Ensembl:ENSG00000165240|HPRD:02054|Vega:OTTHUMG00000021885 X Xq21.1 ATPase, Cu++ transporting, alpha polypeptide protein-coding ATP7A ATPase, Cu++ transporting, alpha polypeptide O Cu++-transporting P-type ATPase|Menkes disease-associated protein|copper pump 1|copper-transporting ATPase 1 20121230 -9606 539 ATP5O - ATPO|OSCP HGNC:850|MIM:600828|Ensembl:ENSG00000241837|HPRD:02899|Vega:OTTHUMG00000065186 21 21q22.11 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit O ATP synthase subunit O, mitochondrial|human ATP synthase OSCP subunit|oligomycin sensitivity conferral protein|oligomycin sensitivity conferring protein 20121230 -9606 540 ATP7B RP11-327P2.1 PWD|WC1|WD|WND HGNC:870|MIM:606882|Ensembl:ENSG00000123191|HPRD:06050|Vega:OTTHUMG00000017406 13 13q14.3 ATPase, Cu++ transporting, beta polypeptide protein-coding ATP7B ATPase, Cu++ transporting, beta polypeptide O ATPase, Cu(2+)- transporting, beta polypeptide|Wilson disease-associated protein|copper pump 2|copper-transporting ATPase 2 20121230 -9606 541 ALDH7A1P1 - ATQL1 HGNC:878 5 5q14 aldehyde dehydrogenase 7 family, member A1 pseudogene 1 pseudo ALDH7A1P1 aldehyde dehydrogenase 7 family, member A1 pseudogene 1 O - 20121230 -9606 542 ALDH7A1P2 - ATQL2 HGNC:879 2 2q31.1 aldehyde dehydrogenase 7 family, member A1 pseudogene 2 pseudo ALDH7A1P2 aldehyde dehydrogenase 7 family, member A1 pseudogene 2 O - 20121230 -9606 543 ALDH7A1P3 - ATQL3 HGNC:880 7 7q36 aldehyde dehydrogenase 7 family, member A1 pseudogene 3 pseudo ALDH7A1P3 aldehyde dehydrogenase 7 family, member A1 pseudogene 3 O - 20121230 -9606 544 ALDH7A1P4 - ATQL4 HGNC:881 10 10q21 aldehyde dehydrogenase 7 family, member A1 pseudogene 4 pseudo ALDH7A1P4 aldehyde dehydrogenase 7 family, member A1 pseudogene 4 O - 20121230 -9606 545 ATR - FCTCS|FRP1|MEC1|SCKL|SCKL1 HGNC:882|MIM:601215|Ensembl:ENSG00000175054|HPRD:08369|Vega:OTTHUMG00000159234 3 3q23 ataxia telangiectasia and Rad3 related protein-coding ATR ataxia telangiectasia and Rad3 related O FRAP-related protein 1|FRAP-related protein-1|MEC1, mitosis entry checkpoint 1, homolog|Rad3 related protein|ataxia telangiectasia and Rad3-related protein|protein kinase ATR|serine/threonine-protein kinase ATR 20121230 -9606 546 ATRX RP5-875J14.1 ATR2|JMS|MRXHF1|RAD54|RAD54L|SFM1|SHS|XH2|XNP|ZNF-HX HGNC:886|MIM:300032|Ensembl:ENSG00000085224|HPRD:02069|Vega:OTTHUMG00000022686 X Xq21.1 alpha thalassemia/mental retardation syndrome X-linked protein-coding ATRX alpha thalassemia/mental retardation syndrome X-linked O ATP-dependent helicase ATRX|DNA dependent ATPase and helicase|RAD54 homolog|X-linked helicase II|X-linked nuclear protein|Zinc finger helicase|alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae)|helicase 2, X-linked|transcriptional regulator ATRX 20121230 -9606 547 KIF1A - ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 HGNC:888|MIM:601255|Ensembl:ENSG00000130294|HPRD:03156|Vega:OTTHUMG00000151940 2 2q37.3 kinesin family member 1A protein-coding KIF1A kinesin family member 1A O axonal transporter of synaptic vesicles|kinesin, heavy chain, member 1A, homolog of mouse|kinesin-like protein KIF1A|microtubule-based motor KIF1A|tmp_locus_27|unc-104- and KIF1A-related protein 20121230 -9606 549 AUH - - HGNC:890|MIM:600529|Ensembl:ENSG00000148090|HPRD:08987|Vega:OTTHUMG00000020207 9 9q22.31 AU RNA binding protein/enoyl-CoA hydratase protein-coding AUH AU RNA binding protein/enoyl-CoA hydratase O 3-methylglutaconyl-CoA hydratase|AU RNA binding protein/enoyl-Coenzyme A hydratase|AU RNA-binding protein/enoyl-Coenzyme A hydratase|AU-binding protein/Enoyl-CoA hydratase|AU-specific RNA-binding enoyl-CoA hydratase|methylglutaconyl-CoA hydratase, mitochondrial 20121230 -9606 550 AUP1 - - HGNC:891|MIM:602434|Ensembl:ENSG00000115307|HPRD:03892|Vega:OTTHUMG00000129964 2 2p13 ancient ubiquitous protein 1 protein-coding AUP1 ancient ubiquitous protein 1 O - 20121230 -9606 551 AVP - ADH|ARVP|AVP-NPII|AVRP|VP HGNC:894|MIM:192340|Ensembl:ENSG00000101200|HPRD:01891|Vega:OTTHUMG00000031733 20 20p13 arginine vasopressin protein-coding AVP arginine vasopressin O antidiuretic hormone|neurohypophyseal|vasopressin-neurophysin 2-copeptin|vasopressin-neurophysin II-copeptin 20121230 -9606 552 AVPR1A - AVPR V1a|AVPR1|V1aR HGNC:895|MIM:600821|Ensembl:ENSG00000166148|HPRD:02894|Vega:OTTHUMG00000169980 12 12q14-q15 arginine vasopressin receptor 1A protein-coding AVPR1A arginine vasopressin receptor 1A O SCCL vasopressin subtype 1a receptor|V1-vascular vasopressin receptor AVPR1A|V1a vasopressin receptor|antidiuretic hormone receptor 1A|vascular/hepatic-type arginine vasopressin receptor|vasopressin V1a receptor 20121230 -9606 553 AVPR1B - AVPR3 HGNC:896|MIM:600264|Ensembl:ENSG00000198049|HPRD:02600|Vega:OTTHUMG00000036119 1 1q32 arginine vasopressin receptor 1B protein-coding AVPR1B arginine vasopressin receptor 1B O AVPR V1b|AVPR V3|V1bR|antidiuretic hormone receptor 1B|arginine vasopressin receptor 3|pituitary vasopressin receptor 3|vasopressin V1b receptor|vasopressin V3 receptor 20121230 -9606 554 AVPR2 - ADHR|DI1|DIR|DIR3|NDI|V2R HGNC:897|MIM:300538|Ensembl:ENSG00000126895|HPRD:02368|Vega:OTTHUMG00000024227 X Xq28 arginine vasopressin receptor 2 protein-coding AVPR2 arginine vasopressin receptor 2 O AVPR V2|antidiuretic hormone receptor|renal-type arginine vasopressin receptor|vasopressin V2 receptor 20121230 -9606 558 AXL - JTK11|UFO HGNC:905|MIM:109135|Ensembl:ENSG00000167601|HPRD:00171 19 19q13.1 AXL receptor tyrosine kinase protein-coding AXL AXL receptor tyrosine kinase O AXL oncogene|AXL transforming sequence/gene|oncogene AXL|tyrosine-protein kinase receptor UFO 20121230 -9606 560 AZF1 - AZF|AZFA|SP3 HGNC:908|MIM:415000 Y Yq11 azoospermia factor 1 unknown AZF1 azoospermia factor 1 O - 20121010 -9606 563 AZGP1 - ZA2G|ZAG HGNC:910|MIM:194460|Ensembl:ENSG00000160862|HPRD:01910|Vega:OTTHUMG00000023066 7 7q22.1 alpha-2-glycoprotein 1, zinc-binding protein-coding AZGP1 alpha-2-glycoprotein 1, zinc-binding O Alpha-2-glycoprotein, zinc|Zn-alpha2-glycoprotein|zinc-alpha-2-glycoprotein|zn-alpha-2-GP|zn-alpha-2-glycoprotein 20121230 -9606 566 AZU1 - AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC HGNC:913|MIM:162815|Ensembl:ENSG00000172232|HPRD:01221|Vega:OTTHUMG00000181897 19 19p13.3 azurocidin 1 protein-coding AZU1 azurocidin 1 O azurocidin|cationic antimicrobial protein 37|cationic antimicrobial protein CAP37|heparin-binding protein|neutrophil azurocidin 20121230 -9606 567 B2M CDABP0092 - HGNC:914|MIM:109700|Ensembl:ENSG00000166710|HPRD:00189|Vega:OTTHUMG00000131247 15 15q21-q22.2 beta-2-microglobulin protein-coding B2M beta-2-microglobulin O beta chain of MHC class I molecules|beta-2-microglobin 20121230 -9606 568 B2MR - - HGNC:915|MIM:109710 15 15q13-q15 beta-2-microglobulin regulator unknown B2MR beta-2-microglobulin regulator O - 20080828 -9606 570 BAAT - BACAT|BAT HGNC:932|MIM:602938|Ensembl:ENSG00000136881|HPRD:08376|Vega:OTTHUMG00000020377 9 9q22.3 bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase) protein-coding BAAT bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase) O bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase)|bile acid-CoA:amino acid N-acyltransferase|long-chain fatty-acyl-CoA hydrolase 20121230 -9606 571 BACH1 - BACH-1 HGNC:935|MIM:602751|Ensembl:ENSG00000156273|HPRD:04127|Vega:OTTHUMG00000078878 21 21q22.11 BTB and CNC homology 1, basic leucine zipper transcription factor 1 protein-coding BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 O BTB and CNC homolog 1|HA2303|basic region leucine zipper transcriptional regulator BACH1|transcription regulator protein BACH1 20121230 -9606 572 BAD - BBC2|BCL2L8 HGNC:936|MIM:603167|Ensembl:ENSG00000002330|HPRD:04409|Vega:OTTHUMG00000134302 11 11q13.1 BCL2-associated agonist of cell death protein-coding BAD BCL2-associated agonist of cell death O BCL-X/BCL-2 binding protein|BCL2-antagonist of cell death protein|BCL2-binding component 6|BCL2-binding protein|bcl-2-binding component 6|bcl-2-like protein 8|bcl-XL/Bcl-2-associated death promoter|bcl2 antagonist of cell death|bcl2-L-8 20121230 -9606 573 BAG1 RP11-326F20.2 BAG-1|HAP|RAP46 HGNC:937|MIM:601497|Ensembl:ENSG00000107262|HPRD:03292|Vega:OTTHUMG00000019766 9 9p12 BCL2-associated athanogene protein-coding BAG1 BCL2-associated athanogene O BAG family molecular chaperone regulator 1|Bcl-2 associating athanogene-1 protein|Bcl-2-binding protein|glucocortoid receptor-associated protein RAP46|receptor-associated protein, 46-KD 20121230 -9606 574 BAGE - BAGE1|CT2.1 HGNC:942|MIM:605167|HPRD:05523 21 21p11.1 B melanoma antigen protein-coding BAGE B melanoma antigen O B melanoma antigen 1|antigen MZ2-BA|cancer/testis antigen 2.1|cancer/testis antigen family 2, member 1 20121230 -9606 575 BAI1 - GDAIF HGNC:943|MIM:602682|Ensembl:ENSG00000181790|HPRD:04062|Vega:OTTHUMG00000164732 8 8q24.3 brain-specific angiogenesis inhibitor 1 protein-coding BAI1 brain-specific angiogenesis inhibitor 1 O - 20121230 -9606 576 BAI2 RP11-73M7.7 - HGNC:944|MIM:602683|Ensembl:ENSG00000121753|HPRD:04063|Vega:OTTHUMG00000003885 1 1p35 brain-specific angiogenesis inhibitor 2 protein-coding BAI2 brain-specific angiogenesis inhibitor 2 O Brain-specific angiongenesis inhibitor-2 20121230 -9606 577 BAI3 - - HGNC:945|MIM:602684|Ensembl:ENSG00000135298|HPRD:04064|Vega:OTTHUMG00000014982 6 6q12 brain-specific angiogenesis inhibitor 3 protein-coding BAI3 brain-specific angiogenesis inhibitor 3 O dJ91B17.1 (brain-specific angiogenesis inhibitor 3) 20121230 -9606 578 BAK1 - BAK|BAK-LIKE|BCL2L7|CDN1 HGNC:949|MIM:600516|Ensembl:ENSG00000030110|HPRD:02744|Vega:OTTHUMG00000014530 6 6p21.3 BCL2-antagonist/killer 1 protein-coding BAK1 BCL2-antagonist/killer 1 O BCL2-like 7 protein|apoptosis regulator BAK|bcl-2 homologous antagonist/killer|bcl-2-like protein 7|bcl2-L-7|pro-apoptotic protein BAK 20121230 -9606 579 NKX3-2 - BAPX1|NKX3.2|NKX3B|SMMD HGNC:951|MIM:602183|Ensembl:ENSG00000109705|HPRD:09075|Vega:OTTHUMG00000090657 4 4p16.3 NK3 homeobox 2 protein-coding NKX3-2 NK3 homeobox 2 O bagpipe homeobox protein homolog 1|homeobox protein NK-3 homolog B|homeobox protein Nkx-3.2 20121230 -9606 580 BARD1 - - HGNC:952|MIM:601593|Ensembl:ENSG00000138376|HPRD:03354|Vega:OTTHUMG00000133016 2 2q34-q35 BRCA1 associated RING domain 1 protein-coding BARD1 BRCA1 associated RING domain 1 O BARD-1|BRCA1 associated RING domain 1 isoform alfa|BRCA1 associated RING domain 1 isoform beta|BRCA1 associated RING domain 1 isoform delta|BRCA1 associated RING domain 1 isoform epsilon|BRCA1 associated RING domain 1 isoform eta|BRCA1 associated RING domain 1 isoform gamma|BRCA1 associated RING domain 1 isoform phi|BRCA1-associated RING domain gene 1|BRCA1-associated RING domain protein 1 20121230 -9606 581 BAX - BCL2L4 HGNC:959|MIM:600040|Ensembl:ENSG00000087088|HPRD:02498|Vega:OTTHUMG00000160476 19 19q13.3-q13.4 BCL2-associated X protein protein-coding BAX BCL2-associated X protein O BCL2-associated X protein omega|BCL2-associated X protein transcript variant delta2|apoptosis regulator BAX|bcl-2-like protein 4|bcl2-L-4 20121230 -9606 582 BBS1 - BBS2L2 HGNC:966|MIM:209901|Ensembl:ENSG00000174483|Ensembl:ENSG00000256349|HPRD:01950|Vega:OTTHUMG00000167110|Vega:OTTHUMG00000167719 11 11q13 Bardet-Biedl syndrome 1 protein-coding BBS1 Bardet-Biedl syndrome 1 O BBS2-like protein 2|Bardet-Biedl syndrome 1 protein 20121230 -9606 583 BBS2 - BBS HGNC:967|MIM:606151|Ensembl:ENSG00000125124|HPRD:05855|Vega:OTTHUMG00000176943 16 16q21 Bardet-Biedl syndrome 2 protein-coding BBS2 Bardet-Biedl syndrome 2 O Bardet-Biedl syndrome 2 protein 20121230 -9606 585 BBS4 - - HGNC:969|MIM:600374|Ensembl:ENSG00000140463|HPRD:08982|Vega:OTTHUMG00000133510 15 15q22.3-q23 Bardet-Biedl syndrome 4 protein-coding BBS4 Bardet-Biedl syndrome 4 O Bardet-Biedl syndrome 4 protein 20121230 -9606 586 BCAT1 - BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 HGNC:976|MIM:113520|Ensembl:ENSG00000060982|HPRD:00216|Vega:OTTHUMG00000169053 12 12p12.1 branched chain amino-acid transaminase 1, cytosolic protein-coding BCAT1 branched chain amino-acid transaminase 1, cytosolic O branched chain aminotransferase 1, cytosolic|branched-chain-amino-acid aminotransferase, cytosolic|placental protein 18 20121230 -9606 587 BCAT2 - BCAM|BCATM|BCT2|PP18 HGNC:977|MIM:113530|Ensembl:ENSG00000105552|HPRD:00217 19 19q13 branched chain amino-acid transaminase 2, mitochondrial protein-coding BCAT2 branched chain amino-acid transaminase 2, mitochondrial O branched chain aminotransferase 2, mitochondrial|branched-chain-amino-acid aminotransferase, mitochondrial|placental protein 18 20121230 -9606 590 BCHE - CHE1|E1 HGNC:983|MIM:177400|Ensembl:ENSG00000114200|HPRD:01519|Vega:OTTHUMG00000158131 3 3q26.1-q26.2 butyrylcholinesterase protein-coding BCHE butyrylcholinesterase O acylcholine acylhydrolase|butyrylcholine esterase|choline esterase II|cholinesterase|cholinesterase 1|pseudocholinesterase 20121230 -9606 593 BCKDHA - BCKDE1A|MSU|MSUD1|OVD1A HGNC:986|MIM:608348|Ensembl:ENSG00000248098|Ensembl:ENSG00000255730|HPRD:02009|Vega:OTTHUMG00000168128|Vega:OTTHUMG00000168134 19 19q13.1-q13.2 branched chain keto acid dehydrogenase E1, alpha polypeptide protein-coding BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide O 2-oxoisovalerate dehydrogenase (lipoamide)|2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial|BCKDH E1-alpha|branched-chain alpha-keto acid dehydrogenase E1 component alpha chain 20121230 -9606 594 BCKDHB RP1-279A18.1 E1B|dJ279A18.1 HGNC:987|MIM:248611|Ensembl:ENSG00000083123|HPRD:02011|Vega:OTTHUMG00000016430 6 6q14.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide O 2-oxoisovalerate dehydrogenase beta subunit|2-oxoisovalerate dehydrogenase subunit beta, mitochondrial|BCKDE1B|BCKDH E1-beta|E1b-beta subunit of the branched-chain complex|branched chain alpha-ketoacid dehydrogenase E1-beta subunit|branched-chain alpha-keto acid dehydrogenase E1 component beta chain 20121230 -9606 595 CCND1 - BCL1|D11S287E|PRAD1|U21B31 HGNC:1582|MIM:168461|Ensembl:ENSG00000110092|HPRD:01346|Vega:OTTHUMG00000167877 11 11q13 cyclin D1 protein-coding CCND1 cyclin D1 O B-cell CLL/lymphoma 1|B-cell lymphoma 1 protein|BCL-1 oncogene|G1/S-specific cyclin-D1|PRAD1 oncogene 20121230 -9606 596 BCL2 - Bcl-2|PPP1R50 HGNC:990|MIM:151430|Ensembl:ENSG00000171791|HPRD:01045|Vega:OTTHUMG00000132791 18 18q21.3 B-cell CLL/lymphoma 2 protein-coding BCL2 B-cell CLL/lymphoma 2 O apoptosis regulator Bcl-2|protein phosphatase 1, regulatory subunit 50 20121230 -9606 597 BCL2A1 - ACC-1|ACC-2|BCL2L5|BFL1|GRS|HBPA1 HGNC:991|MIM:601056|Ensembl:ENSG00000140379|HPRD:03034|Vega:OTTHUMG00000144173 15 15q24.3 BCL2-related protein A1 protein-coding BCL2A1 BCL2-related protein A1 O bcl-2-like protein 5|bcl-2-related protein A1|bcl2-L-5|hematopoietic BCL2-related protein A1|hemopoietic-specific early response protein|protein BFL-1 20121230 -9606 598 BCL2L1 RP5-857M17.3 BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS HGNC:992|MIM:600039|Ensembl:ENSG00000171552|HPRD:02497|Vega:OTTHUMG00000032192 20 20q11.21 BCL2-like 1 protein-coding BCL2L1 BCL2-like 1 O apoptosis regulator Bcl-X|bcl-2-like protein 1|protein phosphatase 1, regulatory subunit 52 20121230 -9606 599 BCL2L2 - BCL-W|BCL2-L-2|BCLW|PPP1R51 HGNC:995|MIM:601931|Ensembl:ENSG00000129473|HPRD:03569|Vega:OTTHUMG00000028738 14 14q11.2-q12 BCL2-like 2 protein-coding BCL2L2 BCL2-like 2 O apoptosis regulator BCL-W|bcl-2-like protein 2|protein phosphatase 1, regulatory subunit 51 20121230 -9606 600 BAK1P1 - BAK2|BCL2L7P1|Bak-2 HGNC:996 20 20q11.21 BCL2-antagonist/killer 1 pseudogene 1 pseudo BAK1P1 BCL2-antagonist/killer 1 pseudogene 1 O - 20121230 -9606 601 BAK1P2 - BAK3|BAK3P|BCL2L7P2 HGNC:997 11 11q24.3 BCL2-antagonist/killer 1 pseudogene 2 pseudo BAK1P2 BCL2-antagonist/killer 1 pseudogene 2 O - 20121230 -9606 602 BCL3 - BCL4|D19S37 HGNC:998|MIM:109560|Ensembl:ENSG00000069399|HPRD:00179|Vega:OTTHUMG00000151517 19 19q13.1-q13.2 B-cell CLL/lymphoma 3 protein-coding BCL3 B-cell CLL/lymphoma 3 O B-cell leukemia/lymphoma 3|B-cell lymphoma 3 protein|B-cell lymphoma 3-encoded protein|BCL-3|chronic lymphatic leukemia protein|proto-oncogene BCL3 20121230 -9606 603 BCL5 - - HGNC:1000|MIM:151441 17 17q22 B-cell CLL/lymphoma 5 unknown BCL5 B-cell CLL/lymphoma 5 O - 20120902 -9606 604 BCL6 - BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 HGNC:1001|MIM:109565|Ensembl:ENSG00000113916|HPRD:00180|Vega:OTTHUMG00000156441 3 3q27 B-cell CLL/lymphoma 6 protein-coding BCL6 B-cell CLL/lymphoma 6 O B-cell lymphoma 5 protein|B-cell lymphoma 6 protein|B-cell lymphoma 6 protein transcript|BCL-5|BCL-6|cys-his2 zinc finger transcription factor|lymphoma-associated zinc finger gene on chromosome 3|protein LAZ-3|zinc finger and BTB domain-containing protein 27|zinc finger protein 51|zinc finger transcription factor BCL6S 20121230 -9606 605 BCL7A - BCL7 HGNC:1004|MIM:601406|Ensembl:ENSG00000110987|HPRD:03243|Vega:OTTHUMG00000168951 12 12q24.13 B-cell CLL/lymphoma 7A protein-coding BCL7A B-cell CLL/lymphoma 7A O B-cell CLL/lymphoma 7 protein family member A|B-cell CLL/lymphoma-7 20121230 -9606 606 NBEAP1 - BCL8|BCL8A HGNC:1007|MIM:601889 15 15q11.2 neurobeachin pseudogene 1 pseudo NBEAP1 neurobeachin pseudogene 1 O - 20121230 -9606 607 BCL9 - LGS HGNC:1008|MIM:602597|Ensembl:ENSG00000116128|HPRD:04000|Vega:OTTHUMG00000014031 1 1q21 B-cell CLL/lymphoma 9 protein-coding BCL9 B-cell CLL/lymphoma 9 O B-cell CLL/lymphoma 9 protein|B-cell lymphoma 9 protein|bcl-9|protein legless homolog 20121230 -9606 608 TNFRSF17 - BCM|BCMA|CD269 HGNC:11913|MIM:109545|Ensembl:ENSG00000048462|HPRD:00144|Vega:OTTHUMG00000129826 16 16p13.1 tumor necrosis factor receptor superfamily, member 17 protein-coding TNFRSF17 tumor necrosis factor receptor superfamily, member 17 O B cell maturation antigen|B-cell maturation factor|B-cell maturation protein|tumor necrosis factor receptor superfamily member 17 20121230 -9606 610 HCN2 - BCNG-2|BCNG2|HAC-1 HGNC:4846|MIM:602781|Ensembl:ENSG00000099822|HPRD:07213|Vega:OTTHUMG00000180590 19 19p13.3 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 protein-coding HCN2 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 O brain cyclic nucleotide gated channel 2|brain cyclic nucleotide-gated channel 2|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 20121230 -9606 611 OPN1SW - BCP|BOP|CBT HGNC:1012|MIM:613522|Ensembl:ENSG00000128617|HPRD:01836|Vega:OTTHUMG00000158311 7 7q32.1 opsin 1 (cone pigments), short-wave-sensitive protein-coding OPN1SW opsin 1 (cone pigments), short-wave-sensitive O blue cone photoreceptor pigment|blue-sensitive opsin|short-wave-sensitive opsin 1 20121230 -9606 613 BCR - ALL|BCR1|CML|D22S11|D22S662|PHL HGNC:1014|MIM:151410|Ensembl:ENSG00000186716|HPRD:01044|Vega:OTTHUMG00000150655 22 22q11.23 breakpoint cluster region protein-coding BCR breakpoint cluster region O BCR/FGFR1 chimera protein|FGFR1/BCR chimera protein|breakpoint cluster region protein|renal carcinoma antigen NY-REN-26 20121230 -9606 616 BCRP4 - BCR-4|BCR4|BCRL4 HGNC:1017|MIM:113660 22 22q11.22 breakpoint cluster region pseudogene 4 pseudo BCRP4 breakpoint cluster region pseudogene 4 O - 20121230 -9606 617 BCS1L - BCS|BCS1|BJS|FLNMS|GRACILE|Hs.6719|PTD|h-BCS HGNC:1020|MIM:603647|Ensembl:ENSG00000074582|HPRD:04708|Vega:OTTHUMG00000133114 2 2q33 BC1 (ubiquinol-cytochrome c reductase) synthesis-like protein-coding BCS1L BC1 (ubiquinol-cytochrome c reductase) synthesis-like O BCS1-like protein|h-BCS1|mitochondrial chaperone BCS1|mitochondrial complex III assembly 20121230 -9606 618 BCYRN1 - BC200|BC200a|LINC00004|NCRNA00004 HGNC:1022|MIM:606089 2 2p21 brain cytoplasmic RNA 1 miscRNA BCYRN1 brain cytoplasmic RNA 1 O - 20121230 -9606 619 BCYRN1P1 - BC200b HGNC:1023 X Xq27.1 brain cytoplasmic RNA 1, pseudogene 1 pseudo BCYRN1P1 brain cytoplasmic RNA 1, pseudogene 1 O - 20121230 -9606 620 BCYRN1P2 - BC200g HGNC:1024 1 1q42 brain cytoplasmic RNA 1, pseudogene 2 pseudo BCYRN1P2 brain cytoplasmic RNA 1, pseudogene 2 O - 20121102 -9606 622 BDH1 - BDH|SDR9C1 HGNC:1027|MIM:603063|Ensembl:ENSG00000161267|HPRD:04344|Vega:OTTHUMG00000155478 3 3q29 3-hydroxybutyrate dehydrogenase, type 1 protein-coding BDH1 3-hydroxybutyrate dehydrogenase, type 1 O (R)-3-hydroxybutyrate dehydrogenase|3-hydroxybutyrate dehydrogenase (heart, mitochondrial)|D-beta-hydroxybutyrate dehydrogenase, mitochondrial|short chain dehydrogenase/reductase family 9C, member 1 20121230 -9606 623 BDKRB1 - B1BKR|B1R|BKB1R|BKR1|BRADYB1 HGNC:1029|MIM:600337|Ensembl:ENSG00000100739|HPRD:02639|Vega:OTTHUMG00000171412 14 14q32.1-q32.2 bradykinin receptor B1 protein-coding BDKRB1 bradykinin receptor B1 O B1 bradykinin receptor|BK-1 receptor|bradykinin B1 receptor|bradykinin receptor 1 20121230 -9606 624 BDKRB2 - B2R|BK-2|BK2|BKR2|BRB2 HGNC:1030|MIM:113503|Ensembl:ENSG00000168398|HPRD:00213|Vega:OTTHUMG00000171408 14 14q32.1-q32.2 bradykinin receptor B2 protein-coding BDKRB2 bradykinin receptor B2 O B2 bradykinin receptor|BK-2 receptor 20121230 -9606 626 BDMR - AHO3 HGNC:1032|MIM:600430 2 2q37 brachydactyly-mental retardation syndrome unknown BDMR brachydactyly-mental retardation syndrome O - 20120622 -9606 627 BDNF - ANON2|BULN2 HGNC:1033|MIM:113505|Ensembl:ENSG00000176697|HPRD:00214|Vega:OTTHUMG00000178797 11 11p13 brain-derived neurotrophic factor protein-coding BDNF brain-derived neurotrophic factor O abrineurin|neurotrophin 20121230 -9606 628 BEVI - - MIM:109180 6 - baboon M7 virus integration site unknown - - - - 20110215 -9606 629 CFB DADB-122G4.5 AHUS4|BF|BFD|CFAB|FB|FBI12|GBG|H2-Bf|PBF2 HGNC:1037|MIM:138470|Ensembl:ENSG00000243649|HPRD:00718|Vega:OTTHUMG00000031198 6 6p21.3 complement factor B protein-coding CFB complement factor B O B-factor, properdin|C3 proaccelerator|C3 proactivator|C3/C5 convertase|glycine-rich beta glycoprotein|glycine-rich beta-glycoprotein|properdin factor B 20121230 -9606 631 BFSP1 RP4-531H16.2 CP115|CP94|LIFL-H HGNC:1040|MIM:603307|Ensembl:ENSG00000125864|HPRD:04494|Vega:OTTHUMG00000031940 20 20p12.1 beaded filament structural protein 1, filensin protein-coding BFSP1 beaded filament structural protein 1, filensin O cytoskeletal protein, 115 KD|filensin|lens fiber cell beaded-filament structural protein CP 115|lens intermediate filament-like heavy 20121230 -9606 632 BGLAP RP11-54H19.5 BGP|OC HGNC:1043|MIM:112260|Ensembl:ENSG00000242252|HPRD:00205|Vega:OTTHUMG00000014819 1 1q22 bone gamma-carboxyglutamate (gla) protein protein-coding BGLAP bone gamma-carboxyglutamate (gla) protein O bone Gla protein|bone gamma-carboxyglutamate (gla) protein (osteocalcin)|gamma-carboxyglutamic acid-containing protein|osteocalcin 20121230 -9606 633 BGN - DSPG1|PG-S1|PGI|SLRR1A HGNC:1044|MIM:301870|Ensembl:ENSG00000182492|HPRD:02359|Vega:OTTHUMG00000024205 X Xq28 biglycan protein-coding BGN biglycan O biglycan proteoglycan|bone/cartilage proteoglycan I|bone/cartilage proteoglycan-I|dermatan sulphate proteoglycan I|small leucine-rich protein 1A 20121230 -9606 634 CEACAM1 - BGP|BGP1|BGPI HGNC:1814|MIM:109770|Ensembl:ENSG00000079385|HPRD:00191|Vega:OTTHUMG00000151078 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) protein-coding CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) O CD66a antigen|antigen CD66|carcinoembryonic antigen-related cell adhesion molecule 1 20121230 -9606 635 BHMT - BHMT1 HGNC:1047|MIM:602888|Ensembl:ENSG00000145692|HPRD:04200|Vega:OTTHUMG00000108157 5 5q14.1 betaine--homocysteine S-methyltransferase protein-coding BHMT betaine--homocysteine S-methyltransferase O betaine--homocysteine S-methyltransferase 1 20121230 -9606 636 BICD1 - BICD HGNC:1049|MIM:602204|Ensembl:ENSG00000151746|HPRD:03730|Vega:OTTHUMG00000169307 12 12p11.2-p11.1 bicaudal D homolog 1 (Drosophila) protein-coding BICD1 bicaudal D homolog 1 (Drosophila) O bic-D 1|cytoskeleton-like bicaudal D protein homolog 1|protein bicaudal D homolog 1 20121230 -9606 637 BID - FP497 HGNC:1050|MIM:601997|Ensembl:ENSG00000015475|HPRD:03590|Vega:OTTHUMG00000150087 22 22q11.1 BH3 interacting domain death agonist protein-coding BID BH3 interacting domain death agonist O BH3-interacting domain death agonist|BID isoform ES(1b)|BID isoform L(2)|BID isoform Si6|Human BID coding sequence|apoptic death agonist|desmocollin type 4|p22 BID 20121230 -9606 638 BIK - BIP1|BP4|NBK HGNC:1051|MIM:603392|Ensembl:ENSG00000100290|HPRD:04547|Vega:OTTHUMG00000150703 22 22q13.31 BCL2-interacting killer (apoptosis-inducing) protein-coding BIK BCL2-interacting killer (apoptosis-inducing) O apoptosis inducer NBK|apoptosis-inducing NBK|bcl-2-interacting killer 20121230 -9606 639 PRDM1 RP1-134E15.1 BLIMP1|PRDI-BF1 HGNC:9346|MIM:603423|Ensembl:ENSG00000057657|HPRD:04572|Vega:OTTHUMG00000015299 6 6q21 PR domain containing 1, with ZNF domain protein-coding PRDM1 PR domain containing 1, with ZNF domain O B-lymphocyte-induced maturation protein 1|BLIMP-1|PR domain zinc finger protein 1|PRDI-binding factor-1|beta-interferon gene positive-regulatory domain I binding factor 20121230 -9606 640 BLK - MODY11 HGNC:1057|MIM:191305|Ensembl:ENSG00000136573|HPRD:01866|Vega:OTTHUMG00000090729 8 8p23-p22 B lymphoid tyrosine kinase protein-coding BLK B lymphoid tyrosine kinase O BLK nonreceptor tyrosine kinase|b lymphocyte kinase|p55-Blk|tyrosine-protein kinase Blk 20121230 -9606 641 BLM - BS|RECQ2|RECQL2|RECQL3 HGNC:1058|MIM:604610|Ensembl:ENSG00000197299|HPRD:05211|Vega:OTTHUMG00000149834 15 15q26.1 Bloom syndrome, RecQ helicase-like protein-coding BLM Bloom syndrome, RecQ helicase-like O Bloom syndrome protein|DNA helicase, RecQ-like type 2|recQ protein-like 3 20121230 -9606 642 BLMH - BH|BMH HGNC:1059|MIM:602403|Ensembl:ENSG00000108578|HPRD:03870|Vega:OTTHUMG00000179756 17 17q11.2 bleomycin hydrolase protein-coding BLMH bleomycin hydrolase O BLM hydrolase 20121230 -9606 643 CXCR5 - BLR1|CD185|MDR15 HGNC:1060|MIM:601613|Ensembl:ENSG00000160683|HPRD:03367|Vega:OTTHUMG00000166345 11 11q23.3 chemokine (C-X-C motif) receptor 5 protein-coding CXCR5 chemokine (C-X-C motif) receptor 5 O Burkitt lymphoma receptor 1, GTP binding protein (chemokine (C-X-C motif) receptor 5)|Burkitt lymphoma receptor 1, GTP-binding protein|C-X-C chemokine receptor type 5|CXC-R5|CXCR-5|MDR-15|monocyte-derived receptor 15 20121230 -9606 644 BLVRA - BLVR|BVR|BVRA HGNC:1062|MIM:109750|Ensembl:ENSG00000106605|HPRD:11229|Vega:OTTHUMG00000128953 7 7p13 biliverdin reductase A protein-coding BLVRA biliverdin reductase A O BVR A|biliverdin-IX alpha-reductase 20121230 -9606 645 BLVRB - BVRB|FLR|SDR43U1 HGNC:1063|MIM:600941|Ensembl:ENSG00000090013|HPRD:02967 19 19q13.1-q13.2 biliverdin reductase B (flavin reductase (NADPH)) protein-coding BLVRB biliverdin reductase B (flavin reductase (NADPH)) O BVR-B|FR|GHBP|NADPH-dependent diaphorase|NADPH-flavin reductase|biliverdin-IX beta-reductase|flavin reductase (NADPH)|green heme-binding protein|short chain dehydrogenase/reductase family 43U, member 1 20121230 -9606 646 BNC1 - BNC|BSN1|HsT19447 HGNC:1081|MIM:601930|Ensembl:ENSG00000169594|HPRD:11799|Vega:OTTHUMG00000147362 15 15q25.2 basonuclin 1 protein-coding BNC1 basonuclin 1 O zinc finger protein basonuclin|zinc finger protein basonuclin-1 20121230 -9606 648 BMI1 RP11-573G6.1 FLVI2/BMI1|PCGF4|RNF51 HGNC:1066|MIM:164831|Ensembl:ENSG00000168283|HPRD:01277|Vega:OTTHUMG00000017807 10 10p11.23 BMI1 polycomb ring finger oncogene protein-coding BMI1 BMI1 polycomb ring finger oncogene O B lymphoma Mo-MLV insertion region 1 homolog|flvi-2/bmi-1|murine leukemia viral (bmi-1) oncogene homolog|polycomb complex protein BMI-1|polycomb group RING finger protein 4|polycomb group protein Bmi1|ring finger protein 51 20121230 -9606 649 BMP1 - OI13|PCOLC|PCP|PCP2|TLD HGNC:1067|MIM:112264|Ensembl:ENSG00000168487|HPRD:00209|Vega:OTTHUMG00000097761 8 8p21.3 bone morphogenetic protein 1 protein-coding BMP1 bone morphogenetic protein 1 O mammalian tolloid protein|procollagen C-endopeptidase|procollagen C-proteinase 20121230 -9606 650 BMP2 - BDA2|BMP2A HGNC:1069|MIM:112261|Ensembl:ENSG00000125845|HPRD:00206|Vega:OTTHUMG00000031833 20 20p12 bone morphogenetic protein 2 protein-coding BMP2 bone morphogenetic protein 2 O BMP-2A|bone morphogenetic protein 2A 20121230 -9606 651 BMP3 - BMP-3A HGNC:1070|MIM:112263|Ensembl:ENSG00000152785|HPRD:00208|Vega:OTTHUMG00000130292 4 4q21 bone morphogenetic protein 3 protein-coding BMP3 bone morphogenetic protein 3 O BMP-3|bone morphogenetic protein 3 (osteogenic)|bone morphogenetic protein 3A|bone morphogenetic protein-3|osteogenin 20121230 -9606 652 BMP4 - BMP2B|BMP2B1|MCOPS6|OFC11|ZYME HGNC:1071|MIM:112262|Ensembl:ENSG00000125378|HPRD:00207|Vega:OTTHUMG00000140303 14 14q22-q23 bone morphogenetic protein 4 protein-coding BMP4 bone morphogenetic protein 4 O BMP-2B|BMP-4|bone morphogenetic protein 2B 20121230 -9606 653 BMP5 - - HGNC:1072|MIM:112265|Ensembl:ENSG00000112175|HPRD:00210|Vega:OTTHUMG00000014903 6 6p12.1 bone morphogenetic protein 5 protein-coding BMP5 bone morphogenetic protein 5 O BMP-5 20121230 -9606 654 BMP6 - VGR|VGR1 HGNC:1073|MIM:112266|Ensembl:ENSG00000153162|HPRD:00211|Vega:OTTHUMG00000014217 6 6p24-p23 bone morphogenetic protein 6 protein-coding BMP6 bone morphogenetic protein 6 O BMP-6|VG-1-R|VG-1-related protein|VGR-1|Vg1-related sequence|vegetal related growth factor (TGFB-related)|vegetal-related (TGFB related) cytokine 20121230 -9606 655 BMP7 RP11-560A15.5 OP-1 HGNC:1074|MIM:112267|Ensembl:ENSG00000101144|HPRD:00212|Vega:OTTHUMG00000032812 20 20q13 bone morphogenetic protein 7 protein-coding BMP7 bone morphogenetic protein 7 O osteogenic protein 1 20121230 -9606 656 BMP8B - BMP8|OP2 HGNC:1075|MIM:602284|Ensembl:ENSG00000116985|HPRD:03792|Vega:OTTHUMG00000009247 1 1p35-p32 bone morphogenetic protein 8b protein-coding BMP8B bone morphogenetic protein 8b O BMP-8|BMP-8B|bone morphogenetic protein 8 (osteogenic protein 2)|bone morphogenetic protein 8B|dJ118J21.1 (bone morphogenetic protein 8 (osteogenic protein 2))|osteogenic protein 2 20121230 -9606 657 BMPR1A - 10q23del|ACVRLK3|ALK3|CD292|SKR5 HGNC:1076|MIM:601299|Ensembl:ENSG00000107779|HPRD:03192|Vega:OTTHUMG00000018657 10 10q22.3 bone morphogenetic protein receptor, type IA protein-coding BMPR1A bone morphogenetic protein receptor, type IA O ALK-3|BMP type-1A receptor|BMPR-1A|activin A receptor, type II-like kinase 3|activin receptor-like kinase 3|bone morphogenetic protein receptor type-1A|serine/threonine-protein kinase receptor R5 20121230 -9606 658 BMPR1B - ALK-6|ALK6|CDw293 HGNC:1077|MIM:603248|Ensembl:ENSG00000138696|HPRD:04457|Vega:OTTHUMG00000130991 4 4q22-q24 bone morphogenetic protein receptor, type IB protein-coding BMPR1B bone morphogenetic protein receptor, type IB O BMP type-1B receptor|BMPR-1B|activin receptor-like kinase 6|bone morphogenetic protein receptor type-1B|serine/threonine receptor kinase 20121230 -9606 659 BMPR2 - BMPR-II|BMPR3|BMR2|BRK-3|PPH1|T-ALK HGNC:1078|MIM:600799|Ensembl:ENSG00000204217|HPRD:02880|Vega:OTTHUMG00000133617 2 2q33-q34 bone morphogenetic protein receptor, type II (serine/threonine kinase) protein-coding BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) O BMP type II receptor|BMP type-2 receptor|BMPR-2|bone morphogenetic protein receptor type II|bone morphogenetic protein receptor type-2|type II activin receptor-like kinase|type II receptor for bone morphogenetic protein-4 20121230 -9606 660 BMX - ETK|PSCTK2|PSCTK3 HGNC:1079|MIM:300101|Ensembl:ENSG00000102010|HPRD:02111|Vega:OTTHUMG00000021180 X Xp22.2 BMX non-receptor tyrosine kinase protein-coding BMX BMX non-receptor tyrosine kinase O Etk/Bmx cytosolic tyrosine kinase|NTK38 tyrosine kinase|bone marrow tyrosine kinase gene in chromosome X protein|cytoplasmic tyrosine-protein kinase BMX|epithelial and endothelial tyrosine kinase 20121230 -9606 661 POLR3D - BN51T|RPC4|RPC53|TSBN51 HGNC:1080|MIM:187280|Ensembl:ENSG00000168495|HPRD:01755|Vega:OTTHUMG00000163778 8 8q21 polymerase (RNA) III (DNA directed) polypeptide D, 44kDa protein-coding POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa O BN51 (BHK21) temperature sensitivity complementing|DNA-directed RNA polymerase III 47 kDa polypeptide|DNA-directed RNA polymerase III subunit D|DNA-directed RNA polymerase III subunit RPC4|RNA polymerase III 47 kDa subunit|RNA polymerase III subunit C4|RPC53 homolog|temperature sensitive complementation, cell cycle specific, tsBN51 20121230 -9606 662 BNIP1 TRG8 NIP1|SEC20|TRG-8 HGNC:1082|MIM:603291|Ensembl:ENSG00000113734|HPRD:04480|Vega:OTTHUMG00000130521 5 5q33-q34 BCL2/adenovirus E1B 19kDa interacting protein 1 protein-coding BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 O BCL2/adenovirus E1B 19 kDa protein-interacting protein 1|transformation-related gene 8 protein|vesicle transport protein SEC20 20121230 -9606 663 BNIP2 - BNIP-2|NIP2 HGNC:1083|MIM:603292|Ensembl:ENSG00000140299|HPRD:04481|Vega:OTTHUMG00000132727 15 15q22.2 BCL2/adenovirus E1B 19kDa interacting protein 2 protein-coding BNIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 O BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 20121230 -9606 664 BNIP3 - NIP3 HGNC:1084|MIM:603293|Ensembl:ENSG00000176171|HPRD:04482|Vega:OTTHUMG00000019278 10 10q26.3 BCL2/adenovirus E1B 19kDa interacting protein 3 protein-coding BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 O BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 20121230 -9606 665 BNIP3L - BNIP3a|NIX HGNC:1085|MIM:605368|Ensembl:ENSG00000104765|HPRD:07288|Vega:OTTHUMG00000099433 8 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like protein-coding BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like O BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like|BCL2/adenovirus E1B 19 kDa protein-interacting protein 3A|BCL2/adenovirus E1B 19-kd protein-interacting protein 3a|NIP3-like protein X|NIP3L|adenovirus E1B19k-binding protein B5 20121230 -9606 666 BOK - BCL2L9|BOKL HGNC:1087|MIM:605404|Ensembl:ENSG00000176720|HPRD:05657|Vega:OTTHUMG00000133411 2 2q37.3 BCL2-related ovarian killer protein-coding BOK BCL2-related ovarian killer O bcl-2-like protein 9|bcl-2-related ovarian killer protein|bcl2-L-9|hBOK 20121230 -9606 667 DST RP3-361I14.2 BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|HSAN6|MACF2 HGNC:1090|MIM:113810|Ensembl:ENSG00000151914|HPRD:00222|Vega:OTTHUMG00000014913 6 6p12.1 dystonin protein-coding DST dystonin O 230/240 kDa bullous pemphigoid antigen|bullous pemphigoid antigen 1|bullous pemphigoid antigen 1, 230/240kDa|dystonia musculorum protein|hemidesmosomal plaque protein|trabeculin-beta 20121230 -9606 668 FOXL2 - BPES|BPES1|PFRK|PINTO|POF3 HGNC:1092|MIM:605597|Ensembl:ENSG00000183770|HPRD:05723|Vega:OTTHUMG00000159889 3 3q23 forkhead box L2 protein-coding FOXL2 forkhead box L2 O forkhead box protein L2|forkhead transcription factor FOXL2 20121230 -9606 669 BPGM - DPGM HGNC:1093|MIM:613896|Ensembl:ENSG00000172331|HPRD:01961|Vega:OTTHUMG00000155380 7 7q33 2,3-bisphosphoglycerate mutase protein-coding BPGM 2,3-bisphosphoglycerate mutase O 2,3-bisphosphoglycerate mutase, erythrocyte|2,3-bisphosphoglycerate synthase|2,3-diphosphoglycerate mutase|BPG-dependent PGAM|bisphosphoglycerate mutase|erythrocyte 2,3-bisphosphoglycerate mutase 20121230 -9606 670 BPHL - BPH-RP|MCNAA|VACVASE HGNC:1094|MIM:603156|Ensembl:ENSG00000137274|HPRD:04403|Vega:OTTHUMG00000014140 6 6p25 biphenyl hydrolase-like (serine hydrolase) protein-coding BPHL biphenyl hydrolase-like (serine hydrolase) O biphenyl hydrolase-like protein|biphenyl hydrolase-related protein|breast epithelial mucin-associated antigen|valacyclovir hydrolase|valacyclovirase 20121230 -9606 671 BPI RP13-218F6_A.1 BPIFD1|rBPI HGNC:1095|MIM:109195|Ensembl:ENSG00000101425|HPRD:00174|Vega:OTTHUMG00000032441 20 20q11.23 bactericidal/permeability-increasing protein protein-coding BPI bactericidal/permeability-increasing protein O BPI fold containing family D, member 1|CAP 57|bactericidal permeability-increasing protein|recombinant BPI holoprotein, rBPI 20121230 -9606 672 BRCA1 - BRCAI|BRCC1|BROVCA1|IRIS|PNCA4|PPP1R53|PSCP|RNF53 HGNC:1100|MIM:113705|Ensembl:ENSG00000012048|HPRD:00218|Vega:OTTHUMG00000157426 17 17q21 breast cancer 1, early onset protein-coding BRCA1 breast cancer 1, early onset O BRCA1/BRCA2-containing complex, subunit 1|RING finger protein 53|breast and ovarian cancer susceptibility protein 1|breast and ovarian cancer sususceptibility protein 1|breast cancer type 1 susceptibility protein|protein phosphatase 1, regulatory subunit 53 20121230 -9606 673 BRAF - B-RAF1|BRAF1|NS7|RAFB1 HGNC:1097|MIM:164757|Ensembl:ENSG00000157764|HPRD:01264|Vega:OTTHUMG00000157457 7 7q34 v-raf murine sarcoma viral oncogene homolog B1 protein-coding BRAF v-raf murine sarcoma viral oncogene homolog B1 O 94 kDa B-raf protein|B-Raf proto-oncogene serine/threonine-protein kinase (p94)|murine sarcoma viral (v-raf) oncogene homolog B1|p94|proto-oncogene B-Raf|serine/threonine-protein kinase B-raf 20121230 -9606 675 BRCA2 RP11-298P3.4 BRCC2|BROVCA2|FACD|FAD|FAD1|FANCB|FANCD|FANCD1|GLM3|PNCA2 HGNC:1101|MIM:600185|Ensembl:ENSG00000139618|HPRD:02554|Vega:OTTHUMG00000017411 13 13q12.3 breast cancer 2, early onset protein-coding BRCA2 breast cancer 2, early onset O BRCA1/BRCA2-containing complex, subunit 2|breast and ovarian cancer susceptibility gene, early onset|breast cancer 2 tumor suppressor|breast cancer type 2 susceptibility protein|fanconi anemia group D1 protein|truncated breast and ovarian cancer susceptibility protein 2 20121230 -9606 676 BRDT - BRD6|CT9 HGNC:1105|MIM:602144|Ensembl:ENSG00000137948|HPRD:03684|Vega:OTTHUMG00000010113 1 1p22.1 bromodomain, testis-specific protein-coding BRDT bromodomain, testis-specific O RING3-like protein|bromodomain testis-specific protein|cancer/testis antigen 9 20121230 -9606 677 ZFP36L1 - BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 HGNC:1107|MIM:601064|Ensembl:ENSG00000185650|HPRD:03041|Vega:OTTHUMG00000171385 14 14q22-q24 ZFP36 ring finger protein-like 1 protein-coding ZFP36L1 ZFP36 ring finger protein-like 1 O EGF-response factor 1|butyrate response factor 1|early response factor Berg36|zinc finger protein 36, C3H type-like 1|zinc finger protein 36, C3H1 type-like 1|zinc finger protein, C3H type, 36-like 1 20121230 -9606 678 ZFP36L2 - BRF2|ERF-2|ERF2|RNF162C|TIS11D HGNC:1108|MIM:612053|Ensembl:ENSG00000152518|HPRD:18319|Vega:OTTHUMG00000128642 2 2p22.3-p21 ZFP36 ring finger protein-like 2 protein-coding ZFP36L2 ZFP36 ring finger protein-like 2 O EGF-response factor 2|ZFP36-like 2|butyrate response factor 2|zinc finger protein 36, C3H type-like 1|zinc finger protein 36, C3H type-like 2|zinc finger protein 36, C3H1 type-like 2|zinc finger protein, C3H type, 36-like 2 20121230 -9606 680 BRS3 RP1-196E23.3 - HGNC:1113|MIM:300107|Ensembl:ENSG00000102239|HPRD:02116|Vega:OTTHUMG00000022726 X Xq26.3 bombesin-like receptor 3 protein-coding BRS3 bombesin-like receptor 3 O BRS-3|G-protein coupled receptor|bombesin receptor subtype 3|bombesin receptor subtype-3 20121230 -9606 682 BSG UNQ6505/PRO21383 5F7|CD147|EMMPRIN|M6|OK|TCSF HGNC:1116|MIM:109480|Ensembl:ENSG00000172270|HPRD:00176|Vega:OTTHUMG00000177718 19 19p13.3 basigin (Ok blood group) protein-coding BSG basigin (Ok blood group) O CD147 antigen|OK blood group antigen|basigin|collagenase stimulatory factor|extracellular matrix metalloproteinase inducer|leukocyte activation antigen M6|tumor cell-derived collagenase stimulatory factor 20121230 -9606 683 BST1 - CD157 HGNC:1118|MIM:600387|Ensembl:ENSG00000109743|HPRD:02665|Vega:OTTHUMG00000097739 4 4p15 bone marrow stromal cell antigen 1 protein-coding BST1 bone marrow stromal cell antigen 1 O ADP-ribosyl cyclase 2|BST-1|NAD(+) nucleosidase|bone marrow stromal antigen 1|cADPr hydrolase 2|cyclic ADP-ribose hydrolase 2 20121230 -9606 684 BST2 - CD317|TETHERIN HGNC:1119|MIM:600534|Ensembl:ENSG00000130303|HPRD:02759|Vega:OTTHUMG00000165993 19 19p13.1 bone marrow stromal cell antigen 2 protein-coding BST2 bone marrow stromal cell antigen 2 O BST-2|HM1.24 antigen|NPC-A-7|bone marrow stromal antigen 2 20121230 -9606 685 BTC - - HGNC:1121|MIM:600345|Ensembl:ENSG00000174808|HPRD:02643|Vega:OTTHUMG00000130107 4 4q13.3 betacellulin protein-coding BTC betacellulin O probetacellulin 20121230 -9606 686 BTD - - HGNC:1122|MIM:609019|Ensembl:ENSG00000169814|HPRD:08359|Vega:OTTHUMG00000129861 3 3p25 biotinidase protein-coding BTD biotinidase O biotinase 20121230 -9606 687 KLF9 - BTEB|BTEB1 HGNC:1123|MIM:602902|Ensembl:ENSG00000119138|HPRD:04211|Vega:OTTHUMG00000019991 9 9q13 Kruppel-like factor 9 protein-coding KLF9 Kruppel-like factor 9 O BTE-binding protein 1|GC-box-binding protein 1|Krueppel-like factor 9|basic transcription element binding protein 1|basic transcription element-binding protein 1|transcription factor BTEB1 20121230 -9606 688 KLF5 RP11-505F3.5 BTEB2|CKLF|IKLF HGNC:6349|MIM:602903|Ensembl:ENSG00000102554|HPRD:04212|Vega:OTTHUMG00000017074 13 13q22.1 Kruppel-like factor 5 (intestinal) protein-coding KLF5 Kruppel-like factor 5 (intestinal) O BTE-binding protein 2|GC box binding protein 2|GC-box-binding protein 2|Krueppel-like factor 5|basic transcription element binding protein 2|basic transcription element-binding protein 2|colon krueppel-like factor|colon kruppel-like factor|intestinal-enriched krueppel-like factor|intestinal-enriched kruppel-like factor|transcription factor BTEB2 20121230 -9606 689 BTF3 OK/SW-cl.8 BETA-NAC|BTF3a|BTF3b|NACB HGNC:1125|MIM:602542|Ensembl:ENSG00000145741|HPRD:03966|Vega:OTTHUMG00000102031 5 5q13.2 basic transcription factor 3 protein-coding BTF3 basic transcription factor 3 O RNA polymerase B transcription factor 3|nascent-polypeptide-associated complex beta polypeptide|transcription factor BTF3 20121230 -9606 690 BTF3P11 - BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B HGNC:1126|MIM:602543 13 13q22 basic transcription factor 3 pseudogene 11 pseudo BTF3P11 basic transcription factor 3 pseudogene 11 O - 20121230 -9606 693 BTF3P1 - HUMBTFA HGNC:1129 8 8q11.23 basic transcription factor 3, pseudogene 1 pseudo BTF3P1 basic transcription factor 3, pseudogene 1 O - 20121230 -9606 694 BTG1 - - HGNC:1130|MIM:109580|Ensembl:ENSG00000133639|HPRD:15912|Vega:OTTHUMG00000170092 12 12q22 B-cell translocation gene 1, anti-proliferative protein-coding BTG1 B-cell translocation gene 1, anti-proliferative O B-cell translocation gene 1 protein|protein BTG1 20121230 -9606 695 BTK RP1-164F3.2 AGMX1|AT|ATK|BPK|IMD1|PSCTK1|XLA HGNC:1133|MIM:300300|Ensembl:ENSG00000010671|HPRD:02248|Vega:OTTHUMG00000022022 X Xq21.33-q22 Bruton agammaglobulinemia tyrosine kinase protein-coding BTK Bruton agammaglobulinemia tyrosine kinase O B-cell progenitor kinase|agammaglobulinaemia tyrosine kinase|dominant-negative kinase-deficient Brutons tyrosine kinase|tyrosine-protein kinase BTK|tyrosine-protein kinase BTK isoform (lacking exon 14) 20121230 -9606 696 BTN1A1 - BT|BTN HGNC:1135|MIM:601610|Ensembl:ENSG00000124557|HPRD:03365|Vega:OTTHUMG00000016358 6 6p22.1 butyrophilin, subfamily 1, member A1 protein-coding BTN1A1 butyrophilin, subfamily 1, member A1 O bK14H9.2 (butyrophilin, subfamily 1, member A1)|butyrophilin subfamily 1 member A1 20121230 -9606 698 BTS1 - - HGNC:1147 10 10p11.23 bladder tumor susceptibility 1 unknown BTS1 bladder tumor susceptibility 1 O - 20110215 -9606 699 BUB1 - BUB1A|BUB1L|hBUB1 HGNC:1148|MIM:602452|Ensembl:ENSG00000169679|HPRD:03907|Vega:OTTHUMG00000153638 2 2q14 budding uninhibited by benzimidazoles 1 homolog (yeast) protein-coding BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast) O BUB1 budding uninhibited by benzimidazoles 1 homolog|mitotic checkpoint serine/threonine-protein kinase BUB1|mitotic spindle checkpoint kinase|putative serine/threonine-protein kinase 20121230 -9606 700 BVR1 - - HGNC:1153 8 8q24 Burkitt lymphoma variant rearranging region 1 other BVR1 Burkitt lymphoma variant rearranging region 1 O - 20080828 -9606 701 BUB1B - BUB1beta|BUBR1|Bub1A|MAD3L|SSK1|hBUBR1 HGNC:1149|MIM:602860|Ensembl:ENSG00000156970|HPRD:04176|Vega:OTTHUMG00000129877 15 15q15 budding uninhibited by benzimidazoles 1 homolog beta (yeast) protein-coding BUB1B budding uninhibited by benzimidazoles 1 homolog beta (yeast) O MAD3/BUB1-related protein kinase|mitotic checkpoint kinase MAD3L|mitotic checkpoint serine/threonine-protein kinase BUB1 beta 20121230 -9606 705 BYSL RP5-973N23.2 BYSTIN HGNC:1157|MIM:603871|Ensembl:ENSG00000112578|HPRD:04848|Vega:OTTHUMG00000014687 6 6p21.1 bystin-like protein-coding BYSL bystin-like O by the ribosomal protein s6 gene, drosophila, homolog-like|bystin 20121230 -9606 706 TSPO RP3-526I14.4 BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|mDRC|pk18 HGNC:1158|MIM:109610|Ensembl:ENSG00000100300|HPRD:15913|Vega:OTTHUMG00000150573 22 22q13.31 translocator protein (18kDa) protein-coding TSPO translocator protein (18kDa) O benzodiazepine peripheral binding site|mitochondrial benzodiazepine receptor|peripheral-type benzodiazepine receptor|translocator protein 20121230 -9606 708 C1QBP - GC1QBP|HABP1|SF2p32|gC1Q-R|gC1qR|p32 HGNC:1243|MIM:601269|Ensembl:ENSG00000108561|HPRD:03168|Vega:OTTHUMG00000177875 17 17p13.3 complement component 1, q subcomponent binding protein protein-coding C1QBP complement component 1, q subcomponent binding protein O C1q globular domain-binding protein|complement component 1 Q subcomponent-binding protein, mitochondrial|glycoprotein gC1qBP|hyaluronan-binding protein 1|mitochondrial matrix protein p32|p33|splicing factor SF2-associated protein 20121230 -9606 709 C1HR - - HGNC:1227 X - C1AGOH temperature sensitivity complementing unknown C1HR C1AGOH temperature sensitivity complementing O - 20080828 -9606 710 SERPING1 - C1IN|C1INH|C1NH|HAE1|HAE2 HGNC:1228|MIM:606860|Ensembl:ENSG00000149131|HPRD:06033|Vega:OTTHUMG00000150304 11 11q12.1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 protein-coding SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 O C1 esterase inhibitor|C1-inhibiting factor|complement component 1 inhibitor|plasma protease C1 inhibitor|serine/cysteine proteinase inhibitor clade G member 1|serpin G1 20121230 -9606 711 ERC2-IT1 - C1orf1|C3orf51|Po42 HGNC:1229|HPRD:04924 3 3p14.3 ERC2 intronic transcript 1 (non-protein coding) miscRNA ERC2-IT1 ERC2 intronic transcript 1 (non-protein coding) O - 20121230 -9606 712 C1QA - - HGNC:1241|MIM:120550|Ensembl:ENSG00000173372|HPRD:00393|Vega:OTTHUMG00000002893 1 1p36.12 complement component 1, q subcomponent, A chain protein-coding C1QA complement component 1, q subcomponent, A chain O complement C1q subcomponent subunit A|complement component 1, q subcomponent, alpha polypeptide|complement component C1q, A chain 20121230 -9606 713 C1QB RP4-815O16.3 - HGNC:1242|MIM:120570|Ensembl:ENSG00000173369|HPRD:00394|Vega:OTTHUMG00000002896 1 1p36.12 complement component 1, q subcomponent, B chain protein-coding C1QB complement component 1, q subcomponent, B chain O complement C1q subcomponent subunit B|complement component 1, q subcomponent, beta polypeptide|complement component C1q, B chain|complement subcomponent C1q chain B 20121230 -9606 714 C1QC - C1Q-C|C1QG HGNC:1245|MIM:120575|Ensembl:ENSG00000159189|HPRD:00395|Vega:OTTHUMG00000002891 1 1p36.11 complement component 1, q subcomponent, C chain protein-coding C1QC complement component 1, q subcomponent, C chain O complement C1q subcomponent subunit C|complement component 1, q subcomponent, gamma polypeptide 20121230 -9606 715 C1R - - HGNC:1246|MIM:613785|Ensembl:ENSG00000159403|HPRD:01954|Vega:OTTHUMG00000168149 12 12p13 complement component 1, r subcomponent protein-coding C1R complement component 1, r subcomponent O complement C1r subcomponent 20121230 -9606 716 C1S - - HGNC:1247|MIM:120580|Ensembl:ENSG00000182326|HPRD:00397|Vega:OTTHUMG00000150305 12 12p13 complement component 1, s subcomponent protein-coding C1S complement component 1, s subcomponent O C1 esterase|basic proline-rich peptide IB-1|complement C1s subcomponent|complement component 1 subcomponent s 20121230 -9606 717 C2 DADB-122G4.1 CO2 HGNC:1248|MIM:613927|Ensembl:ENSG00000166278|HPRD:08939|Vega:OTTHUMG00000031190 6 6p21.3 complement component 2 protein-coding C2 complement component 2 O C3/C5 convertase|complement C2|complement component C2 20121230 -9606 718 C3 - AHUS5|ARMD9|ASP|CPAMD1 HGNC:1318|MIM:120700|Ensembl:ENSG00000125730|HPRD:00400 19 19p13.3-p13.2 complement component 3 protein-coding C3 complement component 3 O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 1|acylation-stimulating protein cleavage product|complement C3|complement component C3 20121230 -9606 719 C3AR1 - AZ3B|C3AR|HNFAG09 HGNC:1319|MIM:605246|Ensembl:ENSG00000171860|HPRD:05581|Vega:OTTHUMG00000168569 12 12p13.31 complement component 3a receptor 1 protein-coding C3AR1 complement component 3a receptor 1 O C3a anaphylatoxin chemotactic receptor|C3a-R|complement component 3 receptor 1 20121230 -9606 720 C4A DAMC-258G8.6 C4|C4A2|C4A3|C4A4|C4A6|C4AD|C4S|CO4|CPAMD2|RG HGNC:1323|MIM:120810|Ensembl:ENSG00000244731|HPRD:00401|Vega:OTTHUMG00000031186 6 6p21.3 complement component 4A (Rodgers blood group) protein-coding C4A complement component 4A (Rodgers blood group) O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 2|C4A anaphylatoxin|Rodgers form of C4|acidic C4|acidic complement C4|complement C4-A 20121230 -9606 721 C4B DADB-112B14.11-001 C4B1|C4B12|C4B2|C4B3|C4B5|C4BD|C4F|CH|CO4|CPAMD3 HGNC:1324|MIM:120820|Ensembl:ENSG00000224389|HPRD:00402|HPRD:18631|Vega:OTTHUMG00000031187 6 6p21.3 complement component 4B (Chido blood group) protein-coding C4B complement component 4B (Chido blood group) O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 3|Chido form of C4|basic complement C4|complement C4-B|complement C4B1a 20121223 -9606 722 C4BPA RP11-164O23.4 C4BP|PRP HGNC:1325|MIM:120830|Ensembl:ENSG00000123838|HPRD:00403|Vega:OTTHUMG00000036173 1 1q32 complement component 4 binding protein, alpha protein-coding C4BPA complement component 4 binding protein, alpha O C4b-binding protein alpha chain|proline-rich protein 20121230 -9606 724 C4BPAP2 RP11-6J21.1 C4BPAL2 HGNC:1327 1 1q32 complement component 4 binding protein, alpha pseudogene 2 pseudo C4BPAP2 complement component 4 binding protein, alpha pseudogene 2 O - 20121230 -9606 725 C4BPB RP11-164O23.3 C4BP HGNC:1328|MIM:120831|Ensembl:ENSG00000123843|HPRD:00404|Vega:OTTHUMG00000036035 1 1q32 complement component 4 binding protein, beta protein-coding C4BPB complement component 4 binding protein, beta O C4b-binding protein beta chain 20121230 -9606 726 CAPN5 - HTRA3|nCL-3 HGNC:1482|MIM:602537|Ensembl:ENSG00000149260|HPRD:03963|Vega:OTTHUMG00000165192 11 11q14 calpain 5 protein-coding CAPN5 calpain 5 O calpain htra-3|calpain-5|new calpain 3 20121230 -9606 727 C5 - CPAMD4 HGNC:1331|MIM:120900|Ensembl:ENSG00000106804|HPRD:00405|Vega:OTTHUMG00000020579 9 9q33-q34 complement component 5 protein-coding C5 complement component 5 O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 4|anaphylatoxin C5a analog|complement C5 20121230 -9606 728 C5AR1 - C5A|C5AR|C5R1|CD88 HGNC:1338|MIM:113995|Ensembl:ENSG00000197405|HPRD:00224 19 19q13.3-q13.4 complement component 5a receptor 1 protein-coding C5AR1 complement component 5a receptor 1 O C5a anaphylatoxin chemotactic receptor|C5a anaphylatoxin receptor|C5a ligand|C5a-R|complement component 5 receptor 1 20121230 -9606 729 C6 - - HGNC:1339|MIM:217050|Ensembl:ENSG00000039537|HPRD:01956|Vega:OTTHUMG00000094781 5 5p13 complement component 6 protein-coding C6 complement component 6 O complement component C6 20121230 -9606 730 C7 - - HGNC:1346|MIM:217070|Ensembl:ENSG00000112936|HPRD:01957|Vega:OTTHUMG00000150340 5 5p13 complement component 7 protein-coding C7 complement component 7 O complement component C7 20121230 -9606 731 C8A - - HGNC:1352|MIM:120950|Ensembl:ENSG00000157131|HPRD:00409|Vega:OTTHUMG00000008306 1 1p32 complement component 8, alpha polypeptide protein-coding C8A complement component 8, alpha polypeptide O complement component 8 subunit alpha|complement component C8 alpha chain 20121230 -9606 732 C8B - - HGNC:1353|MIM:120960|Ensembl:ENSG00000021852|HPRD:00410|Vega:OTTHUMG00000008305 1 1p32 complement component 8, beta polypeptide protein-coding C8B complement component 8, beta polypeptide O complement component 8 subunit beta|complement component C8 beta chain 20121230 -9606 733 C8G RP11-229P13.14-003 C8C HGNC:1354|MIM:120930|Ensembl:ENSG00000176919|HPRD:00407|Vega:OTTHUMG00000020955 9 9q34.3 complement component 8, gamma polypeptide protein-coding C8G complement component 8, gamma polypeptide O complement component C8 gamma chain 20121230 -9606 734 OSGIN2 - C8orf1|hT41 HGNC:1355|MIM:604598|Ensembl:ENSG00000164823|HPRD:06853|Vega:OTTHUMG00000163811 8 8q21 oxidative stress induced growth inhibitor family member 2 protein-coding OSGIN2 oxidative stress induced growth inhibitor family member 2 O oxidative stress-induced growth inhibitor 2 20121230 -9606 735 C9 - - HGNC:1358|MIM:120940|Ensembl:ENSG00000113600|HPRD:00408|Vega:OTTHUMG00000094767 5 5p14-p12 complement component 9 protein-coding C9 complement component 9 O complement component C9 20121230 -9606 738 VPS51 PP5382 ANG2|ANG3|C11orf2|C11orf3|FFR HGNC:1172|Ensembl:ENSG00000149823|HPRD:12605|Vega:OTTHUMG00000165600 11 11q13 vacuolar protein sorting 51 homolog (S. cerevisiae) protein-coding VPS51 vacuolar protein sorting 51 homolog (S. cerevisiae) O another new gene 2 protein|protein fat-free homolog|vacuolar protein sorting-associated protein 51 homolog 20121230 -9606 740 MRPL49 OK/SW-cl.67 C11orf4|L49mt|MRP-L49|NOF|NOF1 HGNC:1176|MIM:606866|Ensembl:ENSG00000149792|HPRD:06037|Vega:OTTHUMG00000165608 11 11q13 mitochondrial ribosomal protein L49 protein-coding MRPL49 mitochondrial ribosomal protein L49 O 39S ribosomal protein L49, mitochondrial|neighbor of FAU|next to FAU 20121230 -9606 741 ZNHIT2 - C11orf5|FON HGNC:1177|MIM:604575|Ensembl:ENSG00000174276|HPRD:05200|Vega:OTTHUMG00000165604 11 11q13 zinc finger, HIT-type containing 2 protein-coding ZNHIT2 zinc finger, HIT-type containing 2 O zinc finger HIT domain-containing protein 2|zinc finger, HIT domain containing 2|zinc finger, HIT type 2 20121230 -9606 744 MPPED2 - 239FB|C11orf8 HGNC:1180|MIM:600911|Ensembl:ENSG00000066382|HPRD:02947|Vega:OTTHUMG00000166159 11 11p13 metallophosphoesterase domain containing 2 protein-coding MPPED2 metallophosphoesterase domain containing 2 O fetal brain protein 239|metallophosphoesterase MPPED2|metallophosphoesterase domain-containing protein 2 20121230 -9606 745 MYRF - C11orf9|MRF|Ndt80|pqn-47 HGNC:1181|MIM:608329|Ensembl:ENSG00000124920|HPRD:12213|Vega:OTTHUMG00000168161 11 11q12-q13.1 myelin regulatory factor protein-coding MYRF myelin regulatory factor O myelin gene regulatory factor 20121230 -9606 746 TMEM258 HSPC005 C11orf10 HGNC:1164|Ensembl:ENSG00000134825|HPRD:12602|Vega:OTTHUMG00000168172 11 11q12.2 transmembrane protein 258 protein-coding TMEM258 transmembrane protein 258 O UPF0197 transmembrane protein C11orf10 20121230 -9606 747 DAGLA - C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR HGNC:1165|MIM:614015|Ensembl:ENSG00000134780|HPRD:07092|Vega:OTTHUMG00000168160 11 11q12.2 diacylglycerol lipase, alpha protein-coding DAGLA diacylglycerol lipase, alpha O DGL-alpha|neural stem cell-derived dendrite regulator|sn1-specific diacylglycerol lipase alpha 20121230 -9606 750 C16orf3 - - HGNC:1197|MIM:605179|Ensembl:ENSG00000221819|HPRD:05534|Vega:OTTHUMG00000172804 16 16q24.3 chromosome 16 open reading frame 3 protein-coding C16orf3 chromosome 16 open reading frame 3 O uncharacterized protein C16orf3 20121230 -9606 752 FMNL1 - C17orf1|C17orf1B|FHOD4|FMNL|KW-13 HGNC:1212|MIM:604656|Ensembl:ENSG00000184922|HPRD:06876|Vega:OTTHUMG00000180196 17 17q21 formin-like 1 protein-coding FMNL1 formin-like 1 O CLL-associated antigen KW-13|formin-like protein 1|leukocyte formin 20121230 -9606 753 LDLRAD4 - C18orf1 HGNC:1224|MIM:606571|Ensembl:ENSG00000168675|HPRD:07358|Vega:OTTHUMG00000181925 18 18p11.21 low density lipoprotein receptor class A domain containing 4 protein-coding LDLRAD4 low density lipoprotein receptor class A domain containing 4 O clone 22|uncharacterized protein C18orf1 20121230 -9606 754 PTTG1IP - C21orf1|C21orf3|PBF HGNC:13524|MIM:603784|Ensembl:ENSG00000183255|HPRD:04807|Vega:OTTHUMG00000090254 21 21q22.3 pituitary tumor-transforming 1 interacting protein protein-coding PTTG1IP pituitary tumor-transforming 1 interacting protein O PTTG-binding factor|pituitary tumor-transforming gene 1 protein-interacting protein|pituitary tumor-transforming gene protein-binding factor 20121230 -9606 755 C21orf2 - YF5/A2 HGNC:1260|MIM:603191|Ensembl:ENSG00000160226|Vega:OTTHUMG00000086909 21 21q22.3 chromosome 21 open reading frame 2 protein-coding C21orf2 chromosome 21 open reading frame 2 O nuclear encoded mitochondrial protein C21orf2 20121230 -9606 757 TMEM50B UNQ167/PRO193 C21orf4|HCVP7TP3 HGNC:1280|Ensembl:ENSG00000142188|HPRD:10747|Vega:OTTHUMG00000065286 21 21q22.11 transmembrane protein 50B protein-coding TMEM50B transmembrane protein 50B O HCV p7-trans-regulated protein 3|HCV p7-transregulated protein 3 20121230 -9606 758 MPPED1 RP4-754E20__B.2 239AB|C22orf1|FAM1A HGNC:1306|MIM:602112|Ensembl:ENSG00000186732|HPRD:03663|Vega:OTTHUMG00000150566 22 22q13.31 metallophosphoesterase domain containing 1 protein-coding MPPED1 metallophosphoesterase domain containing 1 O adult brain protein 239|metallophosphoesterase domain-containing protein 1 20121230 -9606 759 CA1 - CA-I|CAB|Car1 HGNC:1368|MIM:114800|Ensembl:ENSG00000133742|HPRD:00265|Vega:OTTHUMG00000164941 8 8q21.2 carbonic anhydrase I protein-coding CA1 carbonic anhydrase I O carbonate dehydratase I|carbonic anhydrase 1|carbonic anhydrase B|carbonic dehydratase 20121230 -9606 760 CA2 - CA-II|CAC|CAII|Car2 HGNC:1373|MIM:611492|Ensembl:ENSG00000104267|HPRD:02023|Vega:OTTHUMG00000164944 8 8q22 carbonic anhydrase II protein-coding CA2 carbonic anhydrase II O carbonate dehydratase II|carbonic anhydrase 2|carbonic anhydrase B|carbonic anhydrase C|carbonic dehydratase 20121230 -9606 761 CA3 - CAIII|Car3 HGNC:1374|MIM:114750|Ensembl:ENSG00000164879|HPRD:00260|Vega:OTTHUMG00000164942 8 8q21.2 carbonic anhydrase III, muscle specific protein-coding CA3 carbonic anhydrase III, muscle specific O CA-III|carbonate dehydratase III|carbonic anhydrase 3 20121230 -9606 762 CA4 - CAIV|Car4|RP17 HGNC:1375|MIM:114760|Ensembl:ENSG00000167434|HPRD:00261|Vega:OTTHUMG00000179987 17 17q23 carbonic anhydrase IV protein-coding CA4 carbonic anhydrase IV O CA-IV|carbonate dehydratase IV|carbonic anhydrase 4|carbonic dehydratase IV 20121230 -9606 763 CA5A - CA5|CAV|CAVA HGNC:1377|MIM:114761|Ensembl:ENSG00000174990|HPRD:00262|Vega:OTTHUMG00000137677 16 16q24.3 carbonic anhydrase VA, mitochondrial protein-coding CA5A carbonic anhydrase VA, mitochondrial O CA-VA|carbonate dehydratase VA|carbonic anhydrase 5A, mitochondrial|carbonic anhydrase V, mitochondrial|carbonic dehydratase 20121230 -9606 764 CA5AP1 - CA5P HGNC:1379 16 16p11.2 carbonic anhydrase VA pseudogene 1 pseudo CA5AP1 carbonic anhydrase VA pseudogene 1 O - 20121230 -9606 765 CA6 RP3-477M7.7 CA-VI|GUSTIN HGNC:1380|MIM:114780|Ensembl:ENSG00000131686|HPRD:00264|Vega:OTTHUMG00000001763 1 1p36.2 carbonic anhydrase VI protein-coding CA6 carbonic anhydrase VI O carbonate dehydratase VI|carbonic anhydrase 6|salivary carbonic anhydrase|secreted carbonic anhydrase 20121230 -9606 766 CA7 - CAVII HGNC:1381|MIM:114770|Ensembl:ENSG00000168748|HPRD:00263|Vega:OTTHUMG00000137524 16 16q22.1 carbonic anhydrase VII protein-coding CA7 carbonic anhydrase VII O CA-VII|carbonate dehydratase VII|carbonic anhydrase 7|carbonic dehydratase VII 20121230 -9606 767 CA8 - CA-VIII|CALS|CAMRQ3|CARP HGNC:1382|MIM:114815|Ensembl:ENSG00000178538|HPRD:00266|Vega:OTTHUMG00000165325 8 8q12.1 carbonic anhydrase VIII protein-coding CA8 carbonic anhydrase VIII O CA-related protein|carbonate dehydratase|carbonic anhydrase-like sequence|carbonic anhydrase-related protein 20121230 -9606 768 CA9 - CAIX|MN HGNC:1383|MIM:603179|Ensembl:ENSG00000107159|HPRD:04417|Vega:OTTHUMG00000021029 9 9p13.3 carbonic anhydrase IX protein-coding CA9 carbonic anhydrase IX O CA-IX|P54/58N|RCC-associated antigen G250|RCC-associated protein G250|carbonate dehydratase IX|carbonic anhydrase 9|carbonic dehydratase|membrane antigen MN|pMW1|renal cell carcinoma-associated antigen G250 20121230 -9606 770 CA11 UNQ211/PRO237 CARPX1 HGNC:1370|MIM:604644|Ensembl:ENSG00000063180|HPRD:05225 19 19q13.3 carbonic anhydrase XI protein-coding CA11 carbonic anhydrase XI O CA-RP II|CA-XI|CARP XI|CARP-2|carbonic anhydrase-related protein 11|carbonic anhydrase-related protein 2|carbonic anhydrase-related protein XI 20121230 -9606 771 CA12 - CAXII|HsT18816 HGNC:1371|MIM:603263|Ensembl:ENSG00000074410|HPRD:04464|Vega:OTTHUMG00000132881 15 15q22 carbonic anhydrase XII protein-coding CA12 carbonic anhydrase XII O CA-XII|carbonate dehydratase XII|carbonic anhydrase 12|carbonic dehydratase|tumor antigen HOM-RCC-3.1.3 20121230 -9606 772 CACD - - HGNC:1387|MIM:215500 17 17p13 central areolar choroidal dystrophy unknown CACD central areolar choroidal dystrophy O - 20120622 -9606 773 CACNA1A - APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6 HGNC:1388|MIM:601011|Ensembl:ENSG00000141837|HPRD:03004|Vega:OTTHUMG00000044590 19 19p13 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit protein-coding CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit O brain calcium channel 1|brain calcium channel I|calcium channel, L type, alpha-1 polypeptide|voltage-dependent P/Q-type calcium channel subunit alpha-1A|voltage-gated calcium channel subunit alpha Cav2.1 20121230 -9606 774 CACNA1B - BIII|CACNL1A5|CACNN|Cav2.2 HGNC:1389|MIM:601012|Ensembl:ENSG00000148408|HPRD:03005|Vega:OTTHUMG00000021002 9 9q34 calcium channel, voltage-dependent, N type, alpha 1B subunit protein-coding CACNA1B calcium channel, voltage-dependent, N type, alpha 1B subunit O Cav2.2 voltage-gated Ca2+ channel|brain calcium channel III|calcium channel alpha12.2 subunit|calcium channel, L type, alpha-1 polypeptide|calcium channel, N type|calcium channel, voltage-dependent, L type, alpha 1B subunit|calcium channel, voltage-dependent, alpha 1B subunit, N type|voltage-dependent N-type calcium channel subunit alpha-1B|voltage-gated calcium channel alpha subunit Cav2.2|voltage-gated calcium channel subunit alpha Cav2.2 20121230 -9606 775 CACNA1C - CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS HGNC:1390|MIM:114205|Ensembl:ENSG00000151067|HPRD:00246|Vega:OTTHUMG00000150243 12 12p13.3 calcium channel, voltage-dependent, L type, alpha 1C subunit protein-coding CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit O DHPR, alpha-1 subunit|calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle|calcium channel, cardic dihydropyridine-sensitive, alpha-1 subunit|voltage-dependent L-type calcium channel subunit alpha-1C|voltage-gated L-type calcium channel Cav1.2 alpha 1 subunit, splice variant 10* 20121230 -9606 776 CACNA1D - CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|SANDD HGNC:1391|MIM:114206|Ensembl:ENSG00000157388|HPRD:00247|Vega:OTTHUMG00000158278 3 3p14.3 calcium channel, voltage-dependent, L type, alpha 1D subunit protein-coding CACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit O calcium channel, L type, alpha-1 polypeptide|calcium channel, neuroendocrine/brain-type, alpha 1 subunit|voltage-dependent L-type calcium channel subunit alpha-1D|voltage-gated calcium channel alpha 1 subunit|voltage-gated calcium channel alpha subunit Cav1.3 20121230 -9606 777 CACNA1E - BII|CACH6|CACNL1A6|Cav2.3 HGNC:1392|MIM:601013|Ensembl:ENSG00000198216|HPRD:03006|Vega:OTTHUMG00000037301 1 1q25.3 calcium channel, voltage-dependent, R type, alpha 1E subunit protein-coding CACNA1E calcium channel, voltage-dependent, R type, alpha 1E subunit O brain calcium channel II|calcium channel, L type, alpha-1 polypeptide|calcium channel, R type, alpha-1 polypeptide|calcium channel, voltage-dependent, alpha 1E subunit|voltage-dependent R-type calcium channel subunit alpha-1E|voltage-dependent calcium channel alpha 1E subunit|voltage-gated calcium channel alpha 1E subunit|voltage-gated calcium channel alpha subunit Cav2.3|voltage-gated calcium channel subunit alpha Cav2.3 20121230 -9606 778 CACNA1F - AIED|COD3|COD4|CORDX|CORDX3|CSNB2|CSNB2A|CSNBX2|Cav1.4|JM8|JMC8|OA2 HGNC:1393|MIM:300110|Ensembl:ENSG00000102001|HPRD:02119|Vega:OTTHUMG00000022703 X Xp11.23 calcium channel, voltage-dependent, L type, alpha 1F subunit protein-coding CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit O Aland island eye disease (Forsius-Eriksson ocular albinism, ocular albinism type 2)|Cav1.4alpha1|voltage gated calcium channel alpha 1F subunit|voltage-dependent L-type calcium channel subunit alpha-1F|voltage-gated calcium channel subunit alpha Cav1.4 20121230 -9606 779 CACNA1S - CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP HGNC:1397|MIM:114208|Ensembl:ENSG00000081248|HPRD:00248|Vega:OTTHUMG00000035784 1 1q32 calcium channel, voltage-dependent, L type, alpha 1S subunit protein-coding CACNA1S calcium channel, voltage-dependent, L type, alpha 1S subunit O calcium channel, L type, alpha 1 polypeptide, isoform 3 (skeletal muscle, hypokalemic periodic paralysis)|dihydropyridine receptor|dihydropyridine-sensitive L-type calcium channel alpha-1 subunit|voltage-dependent L-type calcium channel subunit alpha-1S|voltage-gated calcium channel subunit alpha Cav1.1 20121230 -9606 780 DDR1 DAAP-278B20.1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE HGNC:2730|MIM:600408|Ensembl:ENSG00000204580|HPRD:02678|Vega:OTTHUMG00000031236 6 6p21.3 discoidin domain receptor tyrosine kinase 1 protein-coding DDR1 discoidin domain receptor tyrosine kinase 1 O CD167 antigen-like family member A|PTK3A protein tyrosine kinase 3A|cell adhesion kinase|epithelial discoidin domain-containing receptor 1|mammary carcinoma kinase 10|neuroepithelial tyrosine kinase|neurotrophic tyrosine kinase, receptor, type 4|protein-tyrosine kinase RTK-6|tyrosine kinase DDR|tyrosine-protein kinase CAK 20121230 -9606 781 CACNA2D1 H_DJ0560O14.1 CACNA2|CACNL2A|CCHL2A HGNC:1399|MIM:114204|Ensembl:ENSG00000153956|HPRD:00245|Vega:OTTHUMG00000023622 7 7q21-q22 calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein-coding CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 O calcium channel, L type, alpha 2 polypeptide|dihydropyridine-sensitive L-type, calcium channel alpha-2/delta subunit|voltage-dependent calcium channel subunit alpha-2/delta-1|voltage-gated calcium channel subunit alpha-2/delta-1 20121230 -9606 782 CACNB1 - CAB1|CACNLB1|CCHLB1 HGNC:1401|MIM:114207|Ensembl:ENSG00000067191|HPRD:11743|Vega:OTTHUMG00000133217 17 17q21-q22 calcium channel, voltage-dependent, beta 1 subunit protein-coding CACNB1 calcium channel, voltage-dependent, beta 1 subunit O calcium channel voltage-dependent subunit beta 1|calcium channel, L type, beta 1 polypeptide|dihydropyridine-sensitive L-type, calcium channel beta-1 subunit|voltage-dependent L-type calcium channel subunit beta-1 20121230 -9606 783 CACNB2 RP11-383B4.2 CACNLB2|CAVB2|MYSB HGNC:1402|MIM:600003|Ensembl:ENSG00000165995|HPRD:02473|Vega:OTTHUMG00000017764 10 10p12 calcium channel, voltage-dependent, beta 2 subunit protein-coding CACNB2 calcium channel, voltage-dependent, beta 2 subunit O CAB2|calcium channel voltage-dependent subunit beta 2|lambert-Eaton myasthenic syndrome antigen B|myasthenic (Lambert-Eaton) syndrome antigen B|voltage-dependent L-type calcium channel subunit beta-2 20121230 -9606 784 CACNB3 - CAB3|CACNLB3 HGNC:1403|MIM:601958|Ensembl:ENSG00000167535|HPRD:11879|Vega:OTTHUMG00000170398 12 12q13 calcium channel, voltage-dependent, beta 3 subunit protein-coding CACNB3 calcium channel, voltage-dependent, beta 3 subunit O voltage-dependent L-type calcium channel subunit beta-3 20121230 -9606 785 CACNB4 - CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 HGNC:1404|MIM:601949|Ensembl:ENSG00000182389|HPRD:09057|Vega:OTTHUMG00000155091 2 2q22-q23 calcium channel, voltage-dependent, beta 4 subunit protein-coding CACNB4 calcium channel, voltage-dependent, beta 4 subunit O calcium channel voltage-dependent subunit beta 4|dihydropyridine-sensitive L-type, calcium channel beta-4 subunit|voltage-dependent L-type calcium channel subunit beta-4 20121230 -9606 786 CACNG1 - CACNLG HGNC:1405|MIM:114209|Ensembl:ENSG00000108878|HPRD:00249|Vega:OTTHUMG00000179553 17 17q24 calcium channel, voltage-dependent, gamma subunit 1 protein-coding CACNG1 calcium channel, voltage-dependent, gamma subunit 1 O L-type calcium channel gamma polypeptide|dihydropyridine-sensitive L-type, skeletal muscle calcium channel subunit gamma|neuronal dihydropyridine-sensitive calcium channel gamma subunit|voltage-dependent calcium channel gamma-1 subunit 20121230 -9606 788 SLC25A20 - CAC|CACT HGNC:1421|MIM:613698|Ensembl:ENSG00000178537|HPRD:01953|Vega:OTTHUMG00000133538 3 3p21.31 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 protein-coding SLC25A20 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 O mitochondrial carnitine/acylcarnitine carrier protein 20121230 -9606 789 SLC25A20P1 - CACTP|SLC25A20P HGNC:1422 6 6p12 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 pseudogene 1 pseudo SLC25A20P1 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 pseudogene 1 O - 20121230 -9606 790 CAD - - HGNC:1424|MIM:114010|Ensembl:ENSG00000084774|HPRD:06437|Vega:OTTHUMG00000097070 2 2p22-p21 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase O CAD protein|CAD trifunctional protein|multifunctional protein CAD 20121230 -9606 793 CALB1 - CALB HGNC:1434|MIM:114050|Ensembl:ENSG00000104327|HPRD:00229|Vega:OTTHUMG00000134314 8 8q21.3 calbindin 1, 28kDa protein-coding CALB1 calbindin 1, 28kDa O D-28K|RTVL-H protein|calbindin|calbindin 1, (28kD)|calbindin D28|vitamin D-dependent calcium-binding protein, avian-type 20121230 -9606 794 CALB2 - CAB29|CAL2|CR HGNC:1435|MIM:114051|Ensembl:ENSG00000172137|HPRD:00230|Vega:OTTHUMG00000137589 16 16q22.2 calbindin 2 protein-coding CALB2 calbindin 2 O 29 kDa calbindin|calbindin 2, (29kD, calretinin)|calbindin D29K|calretinin 20121230 -9606 795 S100G - CABP|CABP1|CABP9K|CALB3 HGNC:1436|MIM:302020|Ensembl:ENSG00000169906|HPRD:02360|Vega:OTTHUMG00000021194 X Xp22.2 S100 calcium binding protein G protein-coding S100G S100 calcium binding protein G O S100 calcium-binding protein G|calbindin 3, (vitamin D-dependent calcium-binding protein)|calbindin D9K|calbindin-D9K|protein S100-G|vitamin D-dependent calcium-binding protein, intestinal 20121230 -9606 796 CALCA - CALC1|CGRP|CGRP-I|CGRP1|CT|KC HGNC:1437|MIM:114130|Ensembl:ENSG00000110680|HPRD:00238|Vega:OTTHUMG00000159731 11 11p15.2 calcitonin-related polypeptide alpha protein-coding CALCA calcitonin-related polypeptide alpha O alpha-type CGRP|calcitonin|calcitonin 1|calcitonin gene-related peptide I|calcitonin/calcitonin-related polypeptide, alpha|katacalcin 20121230 -9606 797 CALCB - CALC2|CGRP-II|CGRP2 HGNC:1438|MIM:114160|Ensembl:ENSG00000175868|HPRD:11742|Vega:OTTHUMG00000164629 11 11p15.2-p15.1 calcitonin-related polypeptide beta protein-coding CALCB calcitonin-related polypeptide beta O beta-CGRP|beta-type CGRP|calcitonin 2|calcitonin gene-related peptide 2|calcitonin gene-related peptide II 20121230 -9606 798 CALCP - CALC3 HGNC:1439 11 11p15.1 calcitonin pseudogene pseudo CALCP calcitonin pseudogene O - 20121230 -9606 799 CALCR - CRT|CT-R|CTR|CTR1 HGNC:1440|MIM:114131|Ensembl:ENSG00000004948|HPRD:00239|Vega:OTTHUMG00000023599 7 7q21.3 calcitonin receptor protein-coding CALCR calcitonin receptor O - 20121230 -9606 800 CALD1 - CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 HGNC:1441|MIM:114213|Ensembl:ENSG00000122786|HPRD:00251|Vega:OTTHUMG00000155407 7 7q33 caldesmon 1 protein-coding CALD1 caldesmon 1 O caldesmon 20121230 -9606 801 CALM1 - CALML2|CAMI|CPVT4|DD132|PHKD|caM HGNC:1442|MIM:114180|Ensembl:ENSG00000198668|HPRD:00241|Vega:OTTHUMG00000171044 14 14q32.11 calmodulin 1 (phosphorylase kinase, delta) protein-coding CALM1 calmodulin 1 (phosphorylase kinase, delta) O calmodulin|phosphorylase kinase, delta subunit 20121230 -9606 802 CALM1P1 - CALML1 HGNC:1443 X Xq21.33 calmodulin 1 (phosphorylase kinase, delta) pseudogene 1 pseudo CALM1P1 calmodulin 1 (phosphorylase kinase, delta) pseudogene 1 O - 20121230 -9606 804 CALM1P2 - - HGNC:1444 7 7p11.2 calmodulin 1 (phosphorylase kinase, delta) pseudogene 2 pseudo CALM1P2 calmodulin 1 (phosphorylase kinase, delta) pseudogene 2 O - 20121230 -9606 805 CALM2 - CAMII|PHKD|PHKD2 HGNC:1445|MIM:114182|Ensembl:ENSG00000143933|HPRD:00242|Vega:OTTHUMG00000128850 2 2p21 calmodulin 2 (phosphorylase kinase, delta) protein-coding CALM2 calmodulin 2 (phosphorylase kinase, delta) O LP7057 protein|caM|calmodulin|phosphorylase kinase delta 20121230 -9606 806 CALM2P2 - - HGNC:1447 10 10q22.1 calmodulin 2 pseudogene 2 pseudo CALM2P2 calmodulin 2 pseudogene 2 O - 20121230 -9606 807 CALM2P3 - - HGNC:1448 13 13q14.11 calmodulin 2 pseudogene 3 pseudo CALM2P3 calmodulin 2 pseudogene 3 O - 20121230 -9606 808 CALM3 - PHKD|PHKD3 HGNC:1449|MIM:114183|Ensembl:ENSG00000160014|HPRD:00243|Vega:OTTHUMG00000133517 19 19q13.2-q13.3 calmodulin 3 (phosphorylase kinase, delta) protein-coding CALM3 calmodulin 3 (phosphorylase kinase, delta) O caM|calmodulin 20121230 -9606 810 CALML3 - CLP HGNC:1452|MIM:114184|Ensembl:ENSG00000178363|HPRD:00244|Vega:OTTHUMG00000017597 10 10p15.1 calmodulin-like 3 protein-coding CALML3 calmodulin-like 3 O caM-like protein|calmodulin-like protein 3|calmodulin-related protein NB-1 20121230 -9606 811 CALR - CRT|RO|SSA|cC1qR HGNC:1455|MIM:109091|Ensembl:ENSG00000179218|HPRD:00169|Vega:OTTHUMG00000180574 19 19p13.3-p13.2 calreticulin protein-coding CALR calreticulin O CRP55|ERp60|HACBP|Sicca syndrome antigen A (autoantigen Ro; calreticulin)|calregulin|endoplasmic reticulum resident protein 60|grp60 20121230 -9606 813 CALU - - HGNC:1458|MIM:603420|Ensembl:ENSG00000128595|HPRD:04569|Vega:OTTHUMG00000158274 7 7q32.1 calumenin protein-coding CALU calumenin O IEF SSP 9302|crocalbin|crocalbin-like protein|multiple EF-hand protein 20121230 -9606 814 CAMK4 - CaMK IV|CaMK-GR|IV|caMK HGNC:1464|MIM:114080|Ensembl:ENSG00000152495|HPRD:07169|Vega:OTTHUMG00000128792 5 5q21.3 calcium/calmodulin-dependent protein kinase IV protein-coding CAMK4 calcium/calmodulin-dependent protein kinase IV O CAM kinase IV|CAM kinase- GR|brain Ca(2+)-calmodulin-dependent protein kinase type IV|brain Ca++-calmodulin-dependent protein kinase type IV|caM kinase-GR|calcium/calmodulin-dependent protein kinase type IV|calcium/calmodulin-dependent protein kinase type IV catalytic chain 20121230 -9606 815 CAMK2A - CAMKA HGNC:1460|MIM:114078|Ensembl:ENSG00000070808|HPRD:06532|Vega:OTTHUMG00000134281 5 5q32 calcium/calmodulin-dependent protein kinase II alpha protein-coding CAMK2A calcium/calmodulin-dependent protein kinase II alpha O CaM kinase II alpha subunit|CaM-kinase II alpha chain|CaMK-II alpha subunit|CaMKIINalpha|caM kinase II subunit alpha|caMK-II subunit alpha|calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha|calcium/calmodulin-dependent protein kinase II alpha-B subunit|calcium/calmodulin-dependent protein kinase type II alpha chain|calcium/calmodulin-dependent protein kinase type II subunit alpha 20121230 -9606 816 CAMK2B - CAM2|CAMK2|CAMKB HGNC:1461|MIM:607707|Ensembl:ENSG00000058404|HPRD:12127|Vega:OTTHUMG00000023491 7 7p14.3-p14.1 calcium/calmodulin-dependent protein kinase II beta protein-coding CAMK2B calcium/calmodulin-dependent protein kinase II beta O CaM kinase II beta subunit|CaM-kinase II beta chain|caMK-II subunit beta|calcium/calmodulin-dependent protein kinase type II subunit beta|proline rich calmodulin-dependent protein kinase 20121230 -9606 817 CAMK2D - CAMKD HGNC:1462|MIM:607708|Ensembl:ENSG00000145349|HPRD:09653|Vega:OTTHUMG00000132910 4 4q26 calcium/calmodulin-dependent protein kinase II delta protein-coding CAMK2D calcium/calmodulin-dependent protein kinase II delta O CaM kinase II delta subunit|CaM-kinase II delta chain|CaMK-II delta subunit|caM kinase II subunit delta|caMK-II subunit delta|calcium/calmodulin-dependent protein kinase (CaM kinase) II delta|calcium/calmodulin-dependent protein kinase type II delta chain|calcium/calmodulin-dependent protein kinase type II subunit delta 20121230 -9606 818 CAMK2G RP11-574K11.6 CAMK|CAMK-II|CAMKG HGNC:1463|MIM:602123|Ensembl:ENSG00000148660|HPRD:03672|Vega:OTTHUMG00000018492 10 10q22 calcium/calmodulin-dependent protein kinase II gamma protein-coding CAMK2G calcium/calmodulin-dependent protein kinase II gamma O caMK-II subunit gamma|calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma|calcium/calmodulin-dependent protein kinase type II subunit gamma 20121230 -9606 819 CAMLG - CAML HGNC:1471|MIM:601118|Ensembl:ENSG00000164615|HPRD:03073|Vega:OTTHUMG00000129116 5 5q23 calcium modulating ligand protein-coding CAMLG calcium modulating ligand O calcium signal-modulating cyclophilin ligand|calcium-modulating cyclophilin ligand|calcium-signal modulating cyclophilin ligand|cyclophilin B-binding protein 20121230 -9606 820 CAMP HSD26 CAP-18|CAP18|CRAMP|FALL-39|FALL39|LL37 HGNC:1472|MIM:600474|Ensembl:ENSG00000164047|HPRD:02722|Vega:OTTHUMG00000133526 3 3p21.3 cathelicidin antimicrobial peptide protein-coding CAMP cathelicidin antimicrobial peptide O 18 kDa cationic antimicrobial protein 20121230 -9606 821 CANX - CNX|IP90|P90 HGNC:1473|MIM:114217|Ensembl:ENSG00000127022|HPRD:00252|Vega:OTTHUMG00000130910 5 5q35 calnexin protein-coding CANX calnexin O major histocompatibility complex class I antigen-binding protein p88 20121230 -9606 822 CAPG - AFCP|MCP HGNC:1474|MIM:153615|Ensembl:ENSG00000042493|HPRD:01088|Vega:OTTHUMG00000130183 2 2p11.2 capping protein (actin filament), gelsolin-like protein-coding CAPG capping protein (actin filament), gelsolin-like O actin regulatory protein CAP-G|actin-regulatory protein CAP-G|gelsolin-like capping protein|macrophage capping protein|macrophage-capping protein 20121230 -9606 823 CAPN1 PIG30 CANP|CANP1|CANPL1|muCANP|muCL HGNC:1476|MIM:114220|Ensembl:ENSG00000014216|HPRD:00253|Vega:OTTHUMG00000165614 11 11q13 calpain 1, (mu/I) large subunit protein-coding CAPN1 calpain 1, (mu/I) large subunit O CANP 1|calcium-activated neutral proteinase 1|calpain mu-type|calpain, large polypeptide L1|calpain-1 catalytic subunit|calpain-1 large subunit|cell proliferation-inducing gene 30 protein|cell proliferation-inducing protein 30|micromolar-calpain 20121230 -9606 824 CAPN2 - CANP2|CANPL2|CANPml|mCANP HGNC:1479|MIM:114230|Ensembl:ENSG00000162909|HPRD:00254|Vega:OTTHUMG00000037376 1 1q41-q42 calpain 2, (m/II) large subunit protein-coding CAPN2 calpain 2, (m/II) large subunit O CANP 2|M-calpain|calcium-activated neutral proteinase 2|calpain 2, large [catalytic] subunit|calpain 2, large subunit|calpain M-type|calpain large polypeptide L2|calpain, large polypeptide L2|calpain-2 catalytic subunit|calpain-2 large subunit|millimolar-calpain 20121230 -9606 825 CAPN3 - CANP3|CANPL3|LGMD2|LGMD2A|nCL-1|p94 HGNC:1480|MIM:114240|Ensembl:ENSG00000092529|HPRD:00255|Vega:OTTHUMG00000130619 15 15q15.1 calpain 3, (p94) protein-coding CAPN3 calpain 3, (p94) O calcium-activated neutral proteinase 3|calpain L3|calpain p94, large [catalytic] subunit|calpain, large polypeptide L3|calpain-3|muscle-specific calcium-activated neutral protease 3 large subunit|new calpain 1 20121230 -9606 826 CAPNS1 - 30K|CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 HGNC:1481|MIM:114170|Ensembl:ENSG00000126247|HPRD:00240|Vega:OTTHUMG00000160811 19 19q13.12 calpain, small subunit 1 protein-coding CAPNS1 calpain, small subunit 1 O CANP small subunit|calcium-activated neutral proteinase small subunit|calcium-dependent protease small subunit 1|calcium-dependent protease, small subunit|calpain 4, small subunit (30K)|calpain regulatory subunit|calpain small subunit 1|calpain, small polypeptide 20121230 -9606 827 CAPN6 - CANPX|CAPNX|CalpM|DJ914P14.1 HGNC:1483|MIM:300146|Ensembl:ENSG00000077274|HPRD:02145|Vega:OTTHUMG00000022203 X Xq23 calpain 6 protein-coding CAPN6 calpain 6 O calpain-6|calpain-like protease X-linked|calpamodulin 20121230 -9606 828 CAPS - CAPS1 HGNC:1487|MIM:114212|Ensembl:ENSG00000105519|HPRD:00250|Vega:OTTHUMG00000180619 19 19p13.3 calcyphosine protein-coding CAPS calcyphosine O calcyphosin|calcyphosine 1|thyroid protein p24 20121230 -9606 829 CAPZA1 - CAPPA1|CAPZ|CAZ1 HGNC:1488|MIM:601580|Ensembl:ENSG00000116489|HPRD:03347|Vega:OTTHUMG00000011769 1 1p13.2 capping protein (actin filament) muscle Z-line, alpha 1 protein-coding CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 O Cap Z|F-actin-capping protein subunit alpha-1|capZ alpha-1 20121230 -9606 830 CAPZA2 - CAPPA2|CAPZ HGNC:1490|MIM:601571|Ensembl:ENSG00000198898|HPRD:11871|Vega:OTTHUMG00000023185 7 7q31.2-q31.3 capping protein (actin filament) muscle Z-line, alpha 2 protein-coding CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 O F-actin capping protein alpha-2 subunit|F-actin-capping protein subunit alpha-2|capZ alpha-2 20121230 -9606 831 CAST - BS-17 HGNC:1515|MIM:114090|Ensembl:ENSG00000153113|HPRD:00233|Vega:OTTHUMG00000128413 5 5q15 calpastatin protein-coding CAST calpastatin O calpain inhibitor|sperm BS-17 component 20121230 -9606 832 CAPZB RP4-657E11.7 CAPB|CAPPB|CAPZ HGNC:1491|MIM:601572|Ensembl:ENSG00000077549|HPRD:11872|Vega:OTTHUMG00000002556 1 1p36.1 capping protein (actin filament) muscle Z-line, beta protein-coding CAPZB capping protein (actin filament) muscle Z-line, beta O F-actin-capping protein subunit beta|capZ beta 20121230 -9606 833 CARS - CARS1|CYSRS|MGC:11246 HGNC:1493|MIM:123859|Ensembl:ENSG00000110619|HPRD:00464|Vega:OTTHUMG00000010927 11 11p15.5 cysteinyl-tRNA synthetase protein-coding CARS cysteinyl-tRNA synthetase O cysteine tRNA ligase 1, cytoplasmic|cysteine translase|cysteine--tRNA ligase, cytoplasmic 20121230 -9606 834 CASP1 - ICE|IL1BC|P45 HGNC:1499|MIM:147678|Ensembl:ENSG00000137752|HPRD:00977|Vega:OTTHUMG00000048072 11 11q23 caspase 1, apoptosis-related cysteine peptidase protein-coding CASP1 caspase 1, apoptosis-related cysteine peptidase O CASP1 nirs variant 1|IL-1 beta-converting enzyme|IL1B-convertase|caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase)|caspase-1|interleukin 1, beta, convertase|interleukin 1-B converting enzyme 20121230 -9606 835 CASP2 - CASP-2|ICH1|NEDD-2|NEDD2|PPP1R57 HGNC:1503|MIM:600639|Ensembl:ENSG00000106144|HPRD:02800|Vega:OTTHUMG00000023641 7 7q34-q35 caspase 2, apoptosis-related cysteine peptidase protein-coding CASP2 caspase 2, apoptosis-related cysteine peptidase O caspase-2|neural precursor cell expressed developmentally down-regulated protein 2|protease ICH-1|protein phosphatase 1, regulatory subunit 57 20121230 -9606 836 CASP3 - CPP32|CPP32B|SCA-1 HGNC:1504|MIM:600636|Ensembl:ENSG00000164305|HPRD:02799|Vega:OTTHUMG00000133681 4 4q34 caspase 3, apoptosis-related cysteine peptidase protein-coding CASP3 caspase 3, apoptosis-related cysteine peptidase O CASP-3|CPP-32|PARP cleavage protease|SREBP cleavage activity 1|Yama|apopain|caspase 3, apoptosis-related cysteine protease|caspase-3|cysteine protease CPP32|procaspase3|protein Yama 20121230 -9606 837 CASP4 - ICE(rel)II|ICEREL-II|ICH-2|Mih1/TX|TX HGNC:1505|MIM:602664|Ensembl:ENSG00000196954|HPRD:04047|Vega:OTTHUMG00000166078 11 11q22.2-q22.3 caspase 4, apoptosis-related cysteine peptidase protein-coding CASP4 caspase 4, apoptosis-related cysteine peptidase O CASP-4|ICE(rel)-II|apoptotic cysteine protease Mih1/TX|caspase 4, apoptosis-related cysteine protease|caspase-4|protease ICH-2|protease TX 20121230 -9606 838 CASP5 - ICE(rel)III|ICEREL-III|ICH-3 HGNC:1506|MIM:602665|Ensembl:ENSG00000137757|HPRD:04048|Vega:OTTHUMG00000048073 11 11q22.2-q22.3 caspase 5, apoptosis-related cysteine peptidase protein-coding CASP5 caspase 5, apoptosis-related cysteine peptidase O CASP-5|ICE(rel)-III|TY protease|caspase 5, apoptosis-related cysteine protease|caspase-5|protease ICH-3|protease TY 20121230 -9606 839 CASP6 - MCH2 HGNC:1507|MIM:601532|Ensembl:ENSG00000138794|HPRD:03321|Vega:OTTHUMG00000131914 4 4q25 caspase 6, apoptosis-related cysteine peptidase protein-coding CASP6 caspase 6, apoptosis-related cysteine peptidase O apoptotic protease MCH-2|caspase 6, apoptosis-related cysteine protease|caspase-6 20121230 -9606 840 CASP7 RP11-211N11.6 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 HGNC:1508|MIM:601761|Ensembl:ENSG00000165806|HPRD:03457|Vega:OTTHUMG00000019076 10 10q25 caspase 7, apoptosis-related cysteine peptidase protein-coding CASP7 caspase 7, apoptosis-related cysteine peptidase O ICE-like apoptotic protease 3|apoptotic protease MCH-3|caspase 7, apoptosis-related cysteine protease|caspase-7 20121230 -9606 841 CASP8 - ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 HGNC:1509|MIM:601763|Ensembl:ENSG00000064012|HPRD:03459|Vega:OTTHUMG00000132821 2 2q33-q34 caspase 8, apoptosis-related cysteine peptidase protein-coding CASP8 caspase 8, apoptosis-related cysteine peptidase O FADD-homologous ICE/CED-3-like protease|FADD-like ICE|ICE-like apoptotic protease 5|MACH-alpha-1/2/3 protein|MACH-beta-1/2/3/4 protein|MORT1-associated ced-3 homolog|apoptotic cysteine protease|apoptotic protease Mch-5|caspase 8, apoptosis-related cysteine protease|caspase-8 20121230 -9606 842 CASP9 RP11-265F14.3 APAF-3|APAF3|CASPASE-9c|ICE-LAP6|MCH6|PPP1R56 HGNC:1511|MIM:602234|Ensembl:ENSG00000132906|HPRD:03756|Vega:OTTHUMG00000002256 1 1p36.21 caspase 9, apoptosis-related cysteine peptidase protein-coding CASP9 caspase 9, apoptosis-related cysteine peptidase O ICE-like apoptotic protease 6|apoptotic protease MCH-6|apoptotic protease activating factor 3|caspase-9|protein phosphatase 1, regulatory subunit 56 20121230 -9606 843 CASP10 - ALPS2|FLICE2|MCH4 HGNC:1500|MIM:601762|Ensembl:ENSG00000003400|HPRD:03458|Vega:OTTHUMG00000132818 2 2q33-q34 caspase 10, apoptosis-related cysteine peptidase protein-coding CASP10 caspase 10, apoptosis-related cysteine peptidase O CASP-10|FADD-like ICE2|FAS-associated death domain protein interleukin-1B-converting enzyme 2|ICE-like apoptotic protease 4|apoptotic protease MCH-4|caspase 10, apoptosis-related cysteine protease|caspase-10|interleukin-1B-converting enzyme 2 20121230 -9606 844 CASQ1 RP11-536C5.6 CASQ|PDIB1 HGNC:1512|MIM:114250|Ensembl:ENSG00000143318|HPRD:15915|Vega:OTTHUMG00000031607 1 1q21 calsequestrin 1 (fast-twitch, skeletal muscle) protein-coding CASQ1 calsequestrin 1 (fast-twitch, skeletal muscle) O calmitin|calmitine|calsequestrin, skeletal muscle isoform|calsequestrin-1 20121230 -9606 845 CASQ2 - PDIB2 HGNC:1513|MIM:114251|Ensembl:ENSG00000118729|HPRD:00256|Vega:OTTHUMG00000011970 1 1p13.1 calsequestrin 2 (cardiac muscle) protein-coding CASQ2 calsequestrin 2 (cardiac muscle) O calsequestrin 2, fast-twitch, cardiac muscle|calsequestrin, cardiac muscle isoform|calsequestrin-2 20121230 -9606 846 CASR - CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|NSHPT|PCAR1 HGNC:1514|MIM:601199|Ensembl:ENSG00000036828|HPRD:03122|Vega:OTTHUMG00000159491 3 3q13 calcium-sensing receptor protein-coding CASR calcium-sensing receptor O extracellular calcium-sensing receptor|parathyroid Ca(2+)-sensing receptor 1|parathyroid cell calcium-sensing receptor 20121230 -9606 847 CAT - - HGNC:1516|MIM:115500|Ensembl:ENSG00000121691|HPRD:00282|Vega:OTTHUMG00000044353 11 11p13 catalase protein-coding CAT catalase O - 20121230 -9606 856 CATR1 - - HGNC:1525|MIM:600676 7 7q32 CATR tumorigenicity conversion 1 unknown CATR1 CATR tumorigenicity conversion 1 O - 20090731 -9606 857 CAV1 - BSCL3|CGL3|MSTP085|VIP21 HGNC:1527|MIM:601047|Ensembl:ENSG00000105974|HPRD:03028|Vega:OTTHUMG00000023413 7 7q31.1 caveolin 1, caveolae protein, 22kDa protein-coding CAV1 caveolin 1, caveolae protein, 22kDa O caveolin-1|cell growth-inhibiting protein 32 20121230 -9606 858 CAV2 - CAV HGNC:1528|MIM:601048|Ensembl:ENSG00000105971|HPRD:03029|Vega:OTTHUMG00000023414 7 7q31.1 caveolin 2 protein-coding CAV2 caveolin 2 O caveolae protein, 20-kD|caveolin 2 isoform a and b|caveolin-2 20121230 -9606 859 CAV3 - LGMD1C|LQT9|VIP-21|VIP21 HGNC:1529|MIM:601253|Ensembl:ENSG00000182533|HPRD:03154|Vega:OTTHUMG00000090519 3 3p25 caveolin 3 protein-coding CAV3 caveolin 3 O M-caveolin|caveolin-3 20121230 -9606 860 RUNX2 RP1-166H4.1 AML3|CBFA1|CCD|CCD1|OSF-2|OSF2|PEA2aA|PEBP2A1|PEBP2A2|PEBP2aA|PEBP2aA1 HGNC:10472|MIM:600211|Ensembl:ENSG00000124813|HPRD:02566|Vega:OTTHUMG00000014774 6 6p21 runt-related transcription factor 2 protein-coding RUNX2 runt-related transcription factor 2 O CBF-alpha-1|PEA2-alpha A|PEBP2-alpha A|SL3-3 enhancer factor 1 alpha A subunit|SL3/AKV core-binding factor alpha A subunit|acute myeloid leukemia 3 protein|core-binding factor, runt domain, alpha subunit 1|oncogene AML-3|osteoblast-specific transcription factor 2|polyomavirus enhancer-binding protein 2 alpha A subunit 20121230 -9606 861 RUNX1 - AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB HGNC:10471|MIM:151385|Ensembl:ENSG00000159216|HPRD:01043|Vega:OTTHUMG00000086299 21 21q22.3 runt-related transcription factor 1 protein-coding RUNX1 runt-related transcription factor 1 O AML1-EVI-1 fusion protein|CBF-alpha-2|PEA2-alpha B|PEBP2-alpha B|SL3-3 enhancer factor 1 alpha B subunit|SL3/AKV core-binding factor alpha B subunit|acute myeloid leukemia 1 protein|core-binding factor, runt domain, alpha subunit 2|oncogene AML-1|polyomavirus enhancer-binding protein 2 alpha B subunit 20121230 -9606 862 RUNX1T1 - AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 HGNC:1535|MIM:133435|Ensembl:ENSG00000079102|HPRD:00590|Vega:OTTHUMG00000164066 8 8q22 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) protein-coding RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) O acute myelogenous leukemia 1 translocation 1, cyclin-D related|core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related|eight twenty one protein|myeloid translocation gene on 8q22|protein CBFA2T1|zinc finger MYND domain-containing protein 2 20121230 -9606 863 CBFA2T3 - ETO2|MTG16|MTGR2|ZMYND4 HGNC:1537|MIM:603870|Ensembl:ENSG00000129993|HPRD:04847|Vega:OTTHUMG00000137864 16 16q24 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 protein-coding CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 O MTG8-related gene 2|MTG8-related protein 2|myeloid translocation gene 8 and 16b|myeloid translocation gene on chromosome 16 protein|protein CBFA2T3|zinc finger MYND domain-containing protein 4 20121230 -9606 864 RUNX3 RP3-398I9.1 AML2|CBFA3|PEBP2aC HGNC:10473|MIM:600210|Ensembl:ENSG00000020633|HPRD:02565|Vega:OTTHUMG00000003316 1 1p36 runt-related transcription factor 3 protein-coding RUNX3 runt-related transcription factor 3 O CBF-alpha-3|PEA2 alpha C|PEA2-alpha C|PEBP2 alpha C|PEBP2-alpha C|SL3-3 enhancer factor 1 alpha C subunit|SL3/AKV core-binding factor alpha C subunit|acute myeloid leukemia 2 protein|acute myeloid leukemia gene 2|core-binding factor subunit alpha-3|core-binding factor, runt domain, alpha subunit 3|oncogene AML-2|polyomavirus enhancer-binding protein 2 alpha C subunit|transcription factor AML2 20121230 -9606 865 CBFB - PEBP2B HGNC:1539|MIM:121360|Ensembl:ENSG00000067955|HPRD:00418|Vega:OTTHUMG00000137520 16 16q22.1 core-binding factor, beta subunit protein-coding CBFB core-binding factor, beta subunit O CBF-beta|PEA2-beta|PEBP2-beta|SL3-3 enhancer factor 1 beta subunit|SL3-3 enhancer factor 1 subunit beta|SL3/AKV core-binding factor beta subunit|core-binding factor subunit beta|polyomavirus enhancer binding protein 2, beta subunit|polyomavirus enhancer-binding protein 2 beta subunit 20121230 -9606 866 SERPINA6 - CBG HGNC:1540|MIM:122500|Ensembl:ENSG00000170099|HPRD:00419|Vega:OTTHUMG00000171346 14 14q32.1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 protein-coding SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 O corticosteroid binding globulin|corticosteroid-binding globulin|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6|serpin A6|transcortin 20121230 -9606 867 CBL - C-CBL|CBL2|FRA11B|NSLL|RNF55 HGNC:1541|MIM:165360|Ensembl:ENSG00000110395|HPRD:01320|Vega:OTTHUMG00000166170 11 11q23.3 Cbl proto-oncogene, E3 ubiquitin protein ligase protein-coding CBL Cbl proto-oncogene, E3 ubiquitin protein ligase O Cas-Br-M (murine) ecotropic retroviral transforming sequence|E3 ubiquitin-protein ligase CBL|RING finger protein 55|casitas B-lineage lymphoma proto-oncogene|fragile site, folic acid type, rare, fra(11)(q23.3)|oncogene CBL2|proto-oncogene c-Cbl|signal transduction protein CBL 20121230 -9606 868 CBLB Nbla00127 Cbl-b|RNF56 HGNC:1542|MIM:604491|Ensembl:ENSG00000114423|HPRD:05136|Vega:OTTHUMG00000150654 3 3q13.11 Cbl proto-oncogene, E3 ubiquitin protein ligase B protein-coding CBLB Cbl proto-oncogene, E3 ubiquitin protein ligase B O Cas-Br-M (murine) ecotropic retroviral transforming sequence b|Cas-Br-M (murine) ectropic retroviral transforming sequence b|E3 ubiquitin-protein ligase CBL-B|RING finger protein 56|SH3-binding protein CBL-B|casitas B-lineage lymphoma proto-oncogene b|signal transduction protein CBL-B 20121230 -9606 869 CBLN1 - - HGNC:1543|MIM:600432|Ensembl:ENSG00000102924|HPRD:02697|Vega:OTTHUMG00000133148 16 16q12.1 cerebellin 1 precursor protein-coding CBLN1 cerebellin 1 precursor O cerebellin-1|precerebellin 20121230 -9606 871 SERPINH1 PIG14 AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46 HGNC:1546|MIM:600943|Ensembl:ENSG00000149257|HPRD:02968|Vega:OTTHUMG00000165362 11 11q13.5 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) protein-coding SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) O 47 kDa heat shock protein|arsenic-transactivated protein 3|cell proliferation-inducing gene 14 protein|colligin-1|colligin-2|rheumatoid arthritis antigen A-47|rheumatoid arthritis-related antigen RA-A47|serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)|serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 2, (collagen-binding protein 2)|serpin H1 20121230 -9606 873 CBR1 - CBR|SDR21C1|hCBR1 HGNC:1548|MIM:114830|Ensembl:ENSG00000159228|HPRD:00267|Vega:OTTHUMG00000086618 21 21q22.13 carbonyl reductase 1 protein-coding CBR1 carbonyl reductase 1 O 15-hydroxyprostaglandin dehydrogenase|NADPH-dependent carbonyl reductase 1|carbonyl reductase (NADPH) 1|carbonyl reductase [NADPH] 1|prostaglandin 9-ketoreductase|prostaglandin-E(2) 9-reductase|short chain dehydrogenase/reductase family 21C, member 1 20121230 -9606 874 CBR3 - SDR21C2|hCBR3 HGNC:1549|MIM:603608|Ensembl:ENSG00000159231|HPRD:07222|Vega:OTTHUMG00000086617 21 21q22.2 carbonyl reductase 3 protein-coding CBR3 carbonyl reductase 3 O NADPH-dependent carbonyl reductase 3|carbonyl reductase (NADPH) 3|carbonyl reductase [NADPH] 3|short chain dehydrogenase/reductase family 21C, member 2 20121230 -9606 875 CBS - HIP4 HGNC:1550|MIM:613381|Ensembl:ENSG00000160200|HPRD:01994|Vega:OTTHUMG00000086834 21 21q22.3 cystathionine-beta-synthase protein-coding CBS cystathionine-beta-synthase O beta-thionase|cystathionine beta-synthase|methylcysteine synthase|serine sulfhydrase 20121230 -9606 878 CCA1 - - HGNC:1559|MIM:115660 17 17q24 cataract, congenital, cerulean type, 1 unknown CCA1 cataract, congenital, cerulean type, 1 O - 20120622 -9606 881 CCIN RP11-421H8.4 - HGNC:1568|MIM:603960|Ensembl:ENSG00000185972|HPRD:04907|Vega:OTTHUMG00000019901 9 9p13.3 calicin protein-coding CCIN calicin O - 20121230 -9606 882 CCAL1 - CPDD HGNC:1561|MIM:600668 8 8q chondrocalcinosis 1 (calcium pyrophosphate-deposition disease, early onset osteoarthritis) unknown CCAL1 chondrocalcinosis 1 (calcium pyrophosphate-deposition disease, early onset osteoarthritis) O - 20120622 -9606 883 CCBL1 RP11-545E17.6 GTK|KAT1|KATI HGNC:1564|MIM:600547|Ensembl:ENSG00000171097|HPRD:02769|Vega:OTTHUMG00000020767 9 9q34.11 cysteine conjugate-beta lyase, cytoplasmic protein-coding CCBL1 cysteine conjugate-beta lyase, cytoplasmic O beta-lysase, kidney|cysteine conjugate-beta lyase; cytoplasmic (glutamine transaminase K, kyneurenine aminotransferase)|cysteine-S-conjugate beta-lyase|glutamine transaminase K|glutamine--phenylpyruvate transaminase|glutamine-phenylpyruvate aminotransferase|kyneurenine aminotransferase|kynurenine aminotransferase I|kynurenine--oxoglutarate transaminase 1|kynurenine--oxoglutarate transaminase I 20121230 -9606 885 CCK - - HGNC:1569|MIM:118440|Ensembl:ENSG00000187094|HPRD:00321|Vega:OTTHUMG00000131796 3 3p22.1 cholecystokinin protein-coding CCK cholecystokinin O - 20121230 -9606 886 CCKAR - CCK-A|CCK1-R|CCKRA HGNC:1570|MIM:118444|Ensembl:ENSG00000163394|HPRD:00322|Vega:OTTHUMG00000128567 4 4p15.1-p15.2 cholecystokinin A receptor protein-coding CCKAR cholecystokinin A receptor O CCK-A receptor|CCK-AR|cholecystokinin receptor type A|cholecystokinin type-A receptor|cholecystokinin-1 receptor 20121230 -9606 887 CCKBR - CCK-B|CCK2R|GASR HGNC:1571|MIM:118445|Ensembl:ENSG00000110148|HPRD:00323|Vega:OTTHUMG00000133380 11 11p15.4 cholecystokinin B receptor protein-coding CCKBR cholecystokinin B receptor O CCK-B receptor|CCK-BR|CCK2 receptor|CCK2-R|cholecystokinin-2 receptor|gastrin receptor|gastrin/cholecystokinin type B receptor 20121230 -9606 889 KRIT1 - CAM|CCM1 HGNC:1573|MIM:604214|Ensembl:ENSG00000001631|HPRD:05020|Vega:OTTHUMG00000131187 7 7q21.2 KRIT1, ankyrin repeat containing protein-coding KRIT1 KRIT1, ankyrin repeat containing O ankyrin repeat-containing protein Krit1|cerebral cavernous malformations 1 protein|krev interaction trapped 1|krev interaction trapped protein 1 20121230 -9606 890 CCNA2 - CCN1|CCNA HGNC:1578|MIM:123835|Ensembl:ENSG00000145386|HPRD:00453|Vega:OTTHUMG00000133072 4 4q27 cyclin A2 protein-coding CCNA2 cyclin A2 O cyclin-A|cyclin-A2 20121230 -9606 891 CCNB1 - CCNB HGNC:1579|MIM:123836|Ensembl:ENSG00000134057|HPRD:00454|Vega:OTTHUMG00000097817 5 5q12 cyclin B1 protein-coding CCNB1 cyclin B1 O G2/mitotic-specific cyclin B1|G2/mitotic-specific cyclin-B1 20121230 -9606 892 CCNC RP1-199J3.1 CycC HGNC:1581|MIM:123838|Ensembl:ENSG00000112237|HPRD:00456|Vega:OTTHUMG00000015268 6 6q21 cyclin C protein-coding CCNC cyclin C O SRB11 homolog|cyclin-C|hSRB11 20121230 -9606 894 CCND2 - KIAK0002 HGNC:1583|MIM:123833|Ensembl:ENSG00000118971|HPRD:00451|Vega:OTTHUMG00000168123 12 12p13 cyclin D2 protein-coding CCND2 cyclin D2 O G1/S-specific cyclin D2|G1/S-specific cyclin-D2 20121230 -9606 895 CCND2P - - HGNC:1584 11 11q13 cyclin D2 pseudogene pseudo CCND2P cyclin D2 pseudogene O - 20121230 -9606 896 CCND3 RP5-973N23.3 - HGNC:1585|MIM:123834|Ensembl:ENSG00000112576|HPRD:00452|Vega:OTTHUMG00000014690 6 6p21 cyclin D3 protein-coding CCND3 cyclin D3 O D3-type cyclin|G1/S-specific cyclin D3|G1/S-specific cyclin-D3 20121230 -9606 897 CCND3P - - HGNC:1586 10 10p11.23 cyclin D3 pseudogene pseudo CCND3P cyclin D3 pseudogene O - 20121230 -9606 898 CCNE1 - CCNE HGNC:1589|MIM:123837|Ensembl:ENSG00000105173|HPRD:00455|Vega:OTTHUMG00000177626 19 19q12 cyclin E1 protein-coding CCNE1 cyclin E1 O G1/S-specific cyclin-E1|cyclin Es|cyclin Et 20121230 -9606 899 CCNF - FBX1|FBXO1 HGNC:1591|MIM:600227|Ensembl:ENSG00000162063|HPRD:02574|Vega:OTTHUMG00000128858 16 16p13.3 cyclin F protein-coding CCNF cyclin F O F-box only protein 1|G2/mitotic-specific cyclin-F|cyclin-F 20121230 -9606 900 CCNG1 - CCNG HGNC:1592|MIM:601578|Ensembl:ENSG00000113328|HPRD:03345|Vega:OTTHUMG00000130380 5 5q32-q34 cyclin G1 protein-coding CCNG1 cyclin G1 O cyclin-G|cyclin-G1 20121230 -9606 901 CCNG2 - - HGNC:1593|MIM:603203|Ensembl:ENSG00000138764|HPRD:04438|Vega:OTTHUMG00000130100 4 4q21.1 cyclin G2 protein-coding CCNG2 cyclin G2 O cyclin-G2 20121230 -9606 902 CCNH - CAK|p34|p37 HGNC:1594|MIM:601953|Ensembl:ENSG00000134480|HPRD:09059|Vega:OTTHUMG00000119077 5 5q13.3-q14 cyclin H protein-coding CCNH cyclin H O CAK complex subunit|CDK-activating kinase complex subunit|MO15-associated protein|cyclin-H|cyclin-dependent kinase-activating kinase complex subunit 20121230 -9606 904 CCNT1 - CCNT|CYCT1|HIVE1 HGNC:1599|MIM:143055|Ensembl:ENSG00000129315|HPRD:03938|Vega:OTTHUMG00000170393 12 12q13.11 cyclin T1 protein-coding CCNT1 cyclin T1 O CDK9-associated C-type protein|Human immunodeficiency virus-1 expression|cyclin C-related protein|cyclin T1b|cyclin-T|cyclin-T1|human immunodeficiency virus type 1 (HIV-1) expression (elevated) 1|subunit of positive elongation transcription factor b 20121230 -9606 905 CCNT2 - CYCT2 HGNC:1600|MIM:603862|Ensembl:ENSG00000082258|HPRD:04839|Vega:OTTHUMG00000131712 2 2q21.3 cyclin T2 protein-coding CCNT2 cyclin T2 O SDS-stable vimentin-bound DNA fragment HEF42VIM22|cyclin T2a|cyclin T2b|cyclin-T2|subunit of positive elongation transcription factor b 20121230 -9606 907 CCT - - HGNC:1614|MIM:302200 X - cataract, congenital, total unknown CCT cataract, congenital, total O - 20120620 -9606 908 CCT6A - CCT-zeta|CCT-zeta-1|CCT6|Cctz|HTR3|MoDP-2|TCP-1-zeta|TCP20|TCPZ|TTCP20 HGNC:1620|MIM:104613|Ensembl:ENSG00000146731|HPRD:00089|Vega:OTTHUMG00000022842 7 7p11.2 chaperonin containing TCP1, subunit 6A (zeta 1) protein-coding CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) O T-complex protein 1 subunit zeta|T-complex protein 1, zeta subunit|acute morphine dependence related protein 2|acute morphine dependence-related protein 2|amino acid transport defect-complementing|chaperonin containing T-complex subunit 6|histidine transport regulator 3 20121230 -9606 909 CD1A - CD1|FCB6|HTA1|R4|T6 HGNC:1634|MIM:188370|Ensembl:ENSG00000158477|HPRD:01776|Vega:OTTHUMG00000017512 1 1q22-q23 CD1a molecule protein-coding CD1A CD1a molecule O CD1A antigen, a polypeptide|T-cell surface antigen T6/Leu-6|T-cell surface glycoprotein CD1a|cluster of differentiation 1 A|cortical thymocyte antigen CD1A|differentiation antigen CD1-alpha-3|epidermal dendritic cell marker CD1a|hTa1 thymocyte antigen 20121230 -9606 910 CD1B RP11-101J8.4 CD1|CD1A|R1 HGNC:1635|MIM:188360|Ensembl:ENSG00000158485|HPRD:01775|Vega:OTTHUMG00000017513 1 1q22-q23 CD1b molecule protein-coding CD1B CD1b molecule O CD1B antigen, b polypeptide|T-cell surface glycoprotein CD1b|cortical thymocyte antigen CD1B|differentiation antigen CD1-alpha-3 20121230 -9606 911 CD1C RP11-101J8.3 BDCA1|CD1|CD1A|R7 HGNC:1636|MIM:188340|Ensembl:ENSG00000158481|HPRD:01772|Vega:OTTHUMG00000017514 1 1q22-q23 CD1c molecule protein-coding CD1C CD1c molecule O CD1C antigen, c polypeptide|T-cell surface glycoprotein CD1c|cortical thymocyte antigen CD1C|differentiation antigen CD1-alpha-3 20121230 -9606 912 CD1D - CD1A|R3 HGNC:1637|MIM:188410|Ensembl:ENSG00000158473|HPRD:01780|Vega:OTTHUMG00000022436 1 1q22-q23 CD1d molecule protein-coding CD1D CD1d molecule O CD1D antigen, d polypeptide|HMC class I antigen-like glycoprotein CD1D|R3G1|T-cell surface glycoprotein CD1d|antigen-presenting glycoprotein CD1d|differentiation antigen CD1-alpha-3|thymocyte antigen CD1D 20121230 -9606 913 CD1E RP11-101J8.5 CD1A|R2 HGNC:1638|MIM:188411|Ensembl:ENSG00000158488|HPRD:01781|Vega:OTTHUMG00000017515 1 1q22-q23 CD1e molecule protein-coding CD1E CD1e molecule O CD1E antigen, e polypeptide|R2G1|T-cell surface glycoprotein CD1e, membrane-associated|differentiation antigen CD1-alpha-3|hCD1e|leukocyte differentiation antigen|thymocyte antigen CD1E 20121230 -9606 914 CD2 RP4-655N15.2 LFA-2|SRBC|T11 HGNC:1639|MIM:186990|Ensembl:ENSG00000116824|HPRD:01750|Vega:OTTHUMG00000022750 1 1p13.1 CD2 molecule protein-coding CD2 CD2 molecule O CD2 antigen (p50), sheep red blood cell receptor|LFA-3 receptor|T-cell surface antigen CD2|T-cell surface antigen T11/Leu-5|erythrocyte receptor|lymphocyte-function antigen-2|rosette receptor 20121230 -9606 915 CD3D - CD3-DELTA|T3D HGNC:1673|MIM:186790|Ensembl:ENSG00000167286|HPRD:01730|Vega:OTTHUMG00000166970 11 11q23 CD3d molecule, delta (CD3-TCR complex) protein-coding CD3D CD3d molecule, delta (CD3-TCR complex) O CD3 antigen, delta subunit|CD3 delta|CD3d antigen, delta polypeptide (TiT3 complex)|OKT3, delta chain|T-cell receptor T3 delta chain|T-cell surface glycoprotein CD3 delta chain 20121230 -9606 916 CD3E - T3E|TCRE HGNC:1674|MIM:186830|Ensembl:ENSG00000198851|HPRD:08923|Vega:OTTHUMG00000166968 11 11q23 CD3e molecule, epsilon (CD3-TCR complex) protein-coding CD3E CD3e molecule, epsilon (CD3-TCR complex) O CD3-epsilon|CD3e antigen, epsilon polypeptide (TiT3 complex)|T-cell antigen receptor complex, epsilon subunit of T3|T-cell surface antigen T3/Leu-4 epsilon chain|T-cell surface glycoprotein CD3 epsilon chain 20121230 -9606 917 CD3G - CD3-GAMMA|T3G HGNC:1675|MIM:186740|Ensembl:ENSG00000160654|HPRD:07037|Vega:OTTHUMG00000166971 11 11q23 CD3g molecule, gamma (CD3-TCR complex) protein-coding CD3G CD3g molecule, gamma (CD3-TCR complex) O CD3g antigen, gamma polypeptide (TiT3 complex)|CD3g molecule, epsilon (CD3-TCR complex)|T-cell antigen receptor complex, gamma subunit of T3|T-cell receptor T3 gamma chain|T-cell surface glycoprotein CD3 gamma chain 20121230 -9606 919 CD247 RP11-104L21.1 CD3-ZETA|CD3H|CD3Q|CD3Z|T3Z|TCRZ HGNC:1677|MIM:186780|Ensembl:ENSG00000198821|HPRD:01729|Vega:OTTHUMG00000034593 1 1q24.2 CD247 molecule protein-coding CD247 CD247 molecule O CD247 antigen, zeta subunit|CD3Z antigen, zeta polypeptide (TiT3 complex)|CD3zeta chain|T-cell antigen receptor complex, zeta subunit of CD3|T-cell receptor T3 zeta chain|T-cell surface glycoprotein CD3 zeta chain|TCR zeta chain 20121230 -9606 920 CD4 - CD4mut HGNC:1678|MIM:186940|Ensembl:ENSG00000010610|HPRD:01740|Vega:OTTHUMG00000168514 12 12p13.31 CD4 molecule protein-coding CD4 CD4 molecule O CD4 antigen (p55)|CD4 receptor|T-cell surface antigen T4/Leu-3|T-cell surface glycoprotein CD4 20121230 -9606 921 CD5 - LEU1|T1 HGNC:1685|MIM:153340|Ensembl:ENSG00000110448|HPRD:01078|Vega:OTTHUMG00000167825 11 11q13 CD5 molecule protein-coding CD5 CD5 molecule O CD5 antigen (p56-62)|T-cell surface glycoprotein CD5|lymphocyte antigen T1/Leu-1 20121230 -9606 922 CD5L UNQ203/PRO229 AIM|API6|PRO229|SP-ALPHA|Spalpha HGNC:1690|MIM:602592|Ensembl:ENSG00000073754|HPRD:03997|Vega:OTTHUMG00000022440 1 1q21-q23 CD5 molecule-like protein-coding CD5L CD5 molecule-like O CD5 antigen-like|CD5 antigen-like (scavenger receptor cysteine rich family)|CT-2|apoptosis inhibitor 6|igM-associated peptide 20121230 -9606 923 CD6 - TP120 HGNC:1691|MIM:186720|Ensembl:ENSG00000013725|HPRD:01724|Vega:OTTHUMG00000167823 11 11q13 CD6 molecule protein-coding CD6 CD6 molecule O CD6 antigen|T-cell differentiation antigen CD6|T12 20121230 -9606 924 CD7 - GP40|LEU-9|TP41|Tp40 HGNC:1695|MIM:186820|Ensembl:ENSG00000173762|HPRD:01732|Vega:OTTHUMG00000178662 17 17q25.2-q25.3 CD7 molecule protein-coding CD7 CD7 molecule O CD7 antigen (p41)|T-cell antigen CD7|T-cell leukemia antigen|T-cell surface antigen Leu-9|p41 protein 20121230 -9606 925 CD8A - CD8|Leu2|MAL|p32 HGNC:1706|MIM:186910|Ensembl:ENSG00000153563|HPRD:01737|Vega:OTTHUMG00000130265 2 2p12 CD8a molecule protein-coding CD8A CD8a molecule O CD8 antigen, alpha polypeptide (p32)|Leu2 T-lymphocyte antigen|OKT8 T-cell antigen|T cell co-receptor|T-cell antigen Leu2|T-cell surface glycoprotein CD8 alpha chain|T-lymphocyte differentiation antigen T8/Leu-2|T8 T-cell antigen 20121230 -9606 926 CD8B - CD8B1|LEU2|LY3|LYT3|P37 HGNC:1707|MIM:186730|Ensembl:ENSG00000172116|HPRD:01725|Vega:OTTHUMG00000130264 2 2p12 CD8b molecule protein-coding CD8B CD8b molecule O CD8 antigen, beta polypeptide 1 (p37)|T lymphocyte surface glycoprotein beta chain|T-cell surface glycoprotein CD8 beta chain 20121230 -9606 927 CD8BP - CD8B2 HGNC:1708 2 2q12.1 CD8b molecule pseudogene pseudo CD8BP CD8b molecule pseudogene O - 20121230 -9606 928 CD9 GIG2 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 HGNC:1709|MIM:143030|Ensembl:ENSG00000010278|HPRD:00880|Vega:OTTHUMG00000044400 12 12p13.3 CD9 molecule protein-coding CD9 CD9 molecule O 5H9 antigen|BA-2/p24 antigen|CD9 antigen|CD9 antigen (p24)|cell growth-inhibiting gene 2 protein|leukocyte antigen MIC3|motility related protein-1|tetraspanin-29 20121230 -9606 929 CD14 - - HGNC:1628|MIM:158120|Ensembl:ENSG00000170458|HPRD:01151|Vega:OTTHUMG00000129507 5 5q31.1 CD14 molecule protein-coding CD14 CD14 molecule O monocyte differentiation antigen CD14|myeloid cell-specific leucine-rich glycoprotein 20121230 -9606 930 CD19 - B4|CVID3 HGNC:1633|MIM:107265|Ensembl:ENSG00000177455|HPRD:00113|Vega:OTTHUMG00000097049 16 16p11.2 CD19 molecule protein-coding CD19 CD19 molecule O B-lymphocyte antigen CD19|B-lymphocyte surface antigen B4|T-cell surface antigen Leu-12|differentiation antigen CD19 20121230 -9606 931 MS4A1 - B1|Bp35|CD20|CVID5|LEU-16|MS4A2|S7 HGNC:7315|MIM:112210|Ensembl:ENSG00000156738|HPRD:00204|Vega:OTTHUMG00000167614 11 11q12 membrane-spanning 4-domains, subfamily A, member 1 protein-coding MS4A1 membrane-spanning 4-domains, subfamily A, member 1 O B-lymphocyte antigen CD20|B-lymphocyte cell-surface antigen B1|CD20 antigen|CD20 receptor|leukocyte surface antigen Leu-16 20121230 -9606 932 MS4A3 - CD20L|HTM4 HGNC:7317|MIM:606498|Ensembl:ENSG00000149516|HPRD:09403|Vega:OTTHUMG00000167380 11 11q12.1 membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) protein-coding MS4A3 membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) O CD20 antigen homolog|CD20 antigen-like protein|IgE receptor beta chain|IgE receptor beta subunit|hematopoietic cell 4 transmembrane protein|hematopoietic-specific transmembrane protein 4|membrane-spanning 4-domains subfamily A member 3 20121230 -9606 933 CD22 - SIGLEC-2|SIGLEC2 HGNC:1643|MIM:107266|Ensembl:ENSG00000012124|HPRD:00114 19 19q13.1 CD22 molecule protein-coding CD22 CD22 molecule O B-cell receptor CD22|B-lymphocyte cell adhesion molecule|BL-CAM|CD22 antigen|T-cell surface antigen Leu-14|sialic acid binding Ig-like lectin 2|sialic acid-binding Ig-like lectin 2 20121230 -9606 935 CD24P1 - CD24L1 HGNC:1646 1 1p36 CD24 molecule pseudogene 1 pseudo CD24P1 CD24 molecule pseudogene 1 O - 20121230 -9606 936 CD24P2 - CD24L2 HGNC:1647 15 15q21.3 CD24 molecule pseudogene 2 pseudo CD24P2 CD24 molecule pseudogene 2 O - 20121230 -9606 937 CD24P3 - CD24L3 HGNC:1648 20 20q11.21 CD24 molecule pseudogene 3 pseudo CD24P3 CD24 molecule pseudogene 3 O - 20121230 -9606 938 CD24P4 - CD24L4 HGNC:1649 Y Yq11.222 CD24 molecule pseudogene 4 pseudo CD24P4 CD24 molecule pseudogene 4 O - 20121230 -9606 939 CD27 - S152|T14|TNFRSF7|Tp55 HGNC:11922|MIM:186711|Ensembl:ENSG00000139193|HPRD:01723|Vega:OTTHUMG00000168316 12 12p13 CD27 molecule protein-coding CD27 CD27 molecule O CD27 antigen|CD27L receptor|T cell activation antigen S152|T-cell activation antigen CD27|tumor necrosis factor receptor superfamily, member 7 20121230 -9606 940 CD28 - Tp44 HGNC:1653|MIM:186760|Ensembl:ENSG00000178562|HPRD:01727|Vega:OTTHUMG00000132878 2 2q33 CD28 molecule protein-coding CD28 CD28 molecule O CD28 antigen|T-cell-specific surface glycoprotein CD28 20121230 -9606 941 CD80 - B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7 HGNC:1700|MIM:112203|Ensembl:ENSG00000121594|HPRD:00202|Vega:OTTHUMG00000159419 3 3q13.3-q21 CD80 molecule protein-coding CD80 CD80 molecule O B-lymphocyte activation antigen B7|CD80 antigen (CD28 antigen ligand 1, B7-1 antigen)|CTLA-4 counter-receptor B7.1|T-lymphocyte activation antigen CD80|activation B7-1 antigen|costimulatory factor CD80|costimulatory molecule variant IgV-CD80 20121230 -9606 942 CD86 - B7-2|B7.2|B70|CD28LG2|LAB72 HGNC:1705|MIM:601020|Ensembl:ENSG00000114013|HPRD:03011|Vega:OTTHUMG00000159482 3 3q21 CD86 molecule protein-coding CD86 CD86 molecule O B-lymphocyte activation antigen B7-2|BU63|CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)|CTLA-4 counter-receptor B7.2|FUN-1|T-lymphocyte activation antigen CD86 20121230 -9606 943 TNFRSF8 - CD30|D1S166E|Ki-1 HGNC:11923|MIM:153243|Ensembl:ENSG00000120949|HPRD:01074|Vega:OTTHUMG00000001827 1 1p36 tumor necrosis factor receptor superfamily, member 8 protein-coding TNFRSF8 tumor necrosis factor receptor superfamily, member 8 O CD30L receptor|Ki-1 antigen|cytokine receptor CD30|lymphocyte activation antigen CD30|tumor necrosis factor receptor superfamily member 8 20121230 -9606 944 TNFSF8 - CD153|CD30L|CD30LG HGNC:11938|MIM:603875|Ensembl:ENSG00000106952|HPRD:04852|Vega:OTTHUMG00000021025 9 9q33 tumor necrosis factor (ligand) superfamily, member 8 protein-coding TNFSF8 tumor necrosis factor (ligand) superfamily, member 8 O CD153 antigen|CD30 antigen ligand|CD30 ligand|CD30-L|tumor necrosis factor ligand superfamily member 8 20121230 -9606 945 CD33 - SIGLEC-3|SIGLEC3|p67 HGNC:1659|MIM:159590|Ensembl:ENSG00000105383|HPRD:01165 19 19q13.3 CD33 molecule protein-coding CD33 CD33 molecule O CD33 antigen (gp67)|gp67|myeloid cell surface antigen CD33|sialic acid binding Ig-like lectin 3|sialic acid-binding Ig-like lectin 3 20121230 -9606 946 SIGLEC6 - CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 HGNC:10875|MIM:604405|Ensembl:ENSG00000105492|HPRD:16058|Vega:OTTHUMG00000133571 19 19q13.3 sialic acid binding Ig-like lectin 6 protein-coding SIGLEC6 sialic acid binding Ig-like lectin 6 O CD33 antigen-like 1|obesity-binding protein 1|sialic acid-binding Ig-like lectin 6 20121230 -9606 947 CD34 RP11-328D5.2 - HGNC:1662|MIM:142230|Ensembl:ENSG00000174059|HPRD:00790|Vega:OTTHUMG00000036565 1 1q32 CD34 molecule protein-coding CD34 CD34 molecule O CD34 antigen|hematopoietic progenitor cell antigen CD34 20121230 -9606 948 CD36 - BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 HGNC:1663|MIM:173510|Ensembl:ENSG00000135218|HPRD:01430|Vega:OTTHUMG00000155383 7 7q11.2 CD36 molecule (thrombospondin receptor) protein-coding CD36 CD36 molecule (thrombospondin receptor) O CD36 antigen (collagen type I receptor, thrombospondin receptor)|GPIIIB|PAS IV|PAS-4 protein|cluster determinant 36|fatty acid translocase|glycoprotein IIIb|leukocyte differentiation antigen CD36|platelet glycoprotein 4|platelet glycoprotein IV|scavenger receptor class B, member 3 20121230 -9606 949 SCARB1 - CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 HGNC:1664|MIM:601040|Ensembl:ENSG00000073060|HPRD:03024|Vega:OTTHUMG00000168544 12 12q24.31 scavenger receptor class B, member 1 protein-coding SCARB1 scavenger receptor class B, member 1 O CD36 and LIMPII analogous 1|CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 1|scavenger receptor class B member 1|scavenger receptor class B type III 20121230 -9606 950 SCARB2 - AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII HGNC:1665|MIM:602257|Ensembl:ENSG00000138760|HPRD:03772|Vega:OTTHUMG00000130099 4 4q21.1 scavenger receptor class B, member 2 protein-coding SCARB2 scavenger receptor class B, member 2 O 85 kDa lysosomal membrane sialoglycoprotein|85 kDa lysosomal sialoglycoprotein scavenger receptor class B, member 2|CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 (lysosomal integral membrane protein II)|CD36 antigen-like 2|LIMP II|lysosome membrane protein 2|lysosome membrane protein II 20121230 -9606 951 CD37 - GP52-40|TSPAN26 HGNC:1666|MIM:151523|Ensembl:ENSG00000104894|HPRD:01053 19 19q13.3 CD37 molecule protein-coding CD37 CD37 molecule O CD37 antigen|cell differentiation antigen 37|leukocyte antigen CD37|leukocyte surface antigen CD37|tetraspanin-26|tspan-26 20121230 -9606 952 CD38 - T10 HGNC:1667|MIM:107270|Ensembl:ENSG00000004468|HPRD:00116|Vega:OTTHUMG00000048206 4 4p15 CD38 molecule protein-coding CD38 CD38 molecule O ADP-ribosyl cyclase 1|ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase|CD38 antigen (p45)|NAD(+) nucleosidase|cADPr hydrolase 1|cyclic ADP-ribose hydrolase 1 20121230 -9606 953 ENTPD1 - ATPDase|CD39|NTPDase-1 HGNC:3363|MIM:601752|Ensembl:ENSG00000138185|HPRD:09047|Vega:OTTHUMG00000018818 10 10q24 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 O CD39 antigen|NTPDase 1|ecto-ATP diphosphohydrolase 1|ecto-ATPDase 1|ecto-ATPase 1|ecto-apyrase|lymphoid cell activation antigen 20121230 -9606 954 ENTPD2 RP11-229P13.11-001 CD39L1|NTPDase-2 HGNC:3364|MIM:602012|Ensembl:ENSG00000054179|HPRD:03600|Vega:OTTHUMG00000020953 9 9q34 ectonucleoside triphosphate diphosphohydrolase 2 protein-coding ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 O CD39 antigen-like 1|NTPDase 2|ecto-ATP diphosphohydrolase 2|ecto-ATPDase 2|ecto-ATPase 2 20121230 -9606 955 ENTPD6 RP4-738P15.5 CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3 HGNC:3368|MIM:603160|Ensembl:ENSG00000197586|HPRD:16013|Vega:OTTHUMG00000032116 20 20p11.21 ectonucleoside triphosphate diphosphohydrolase 6 (putative) protein-coding ENTPD6 ectonucleoside triphosphate diphosphohydrolase 6 (putative) O CD39 antigen-like 2|CD39-like 2|HCV-E2 binding protein 1|NTPDase 6|ectonucleoside triphosphate diphosphohydrolase 6|ectonucleoside triphosphate diphosphohydrolase 6 (putative function)|interleukin 6 signal transducer-2 20121230 -9606 956 ENTPD3 - CD39L3|HB6|NTPDase-3 HGNC:3365|MIM:603161|Ensembl:ENSG00000168032|HPRD:16014|Vega:OTTHUMG00000131390 3 3p21.3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 O CD39 antigen-like 3|CD39-like 3|NTPDase 3|ecto-ATP diphosphohydrolase 3|ecto-ATPDase 3|ecto-ATPase 3|ecto-apyrase 3 20121230 -9606 957 ENTPD5 - CD39L4|NTPDase-5|PCPH HGNC:3367|MIM:603162|Ensembl:ENSG00000187097|HPRD:16015|Vega:OTTHUMG00000171201 14 14q24 ectonucleoside triphosphate diphosphohydrolase 5 protein-coding ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 O CD39 antigen-like 4|CD39-like 4|ER-UDPase|GDPase ENTPD5|NTPDase 5|Pcph proto-oncogene protein|UDPase ENTPD5|guanosine-diphosphatase ENTPD5|nucleoside diphosphatase|proto-oncogene CPH|uridine-diphosphatase ENTPD5 20121230 -9606 958 CD40 - Bp50|CDW40|TNFRSF5|p50 HGNC:11919|MIM:109535|Ensembl:ENSG00000101017|HPRD:00178|Vega:OTTHUMG00000033053 20 20q12-q13.2 CD40 molecule, TNF receptor superfamily member 5 protein-coding CD40 CD40 molecule, TNF receptor superfamily member 5 O B cell surface antigen CD40|B cell-associated molecule|B-cell surface antigen CD40|CD40 antigen (TNF receptor superfamily member 5)|CD40 type II isoform|CD40L receptor|nerve growth factor receptor-related B-lymphocyte activation molecule|tumor necrosis factor receptor superfamily member 5|tumor necrosis factor receptor superfamily, member 5 20121230 -9606 959 CD40LG RP3-527F8.3 CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L HGNC:11935|MIM:300386|Ensembl:ENSG00000102245|HPRD:02311|Vega:OTTHUMG00000022512 X Xq26 CD40 ligand protein-coding CD40LG CD40 ligand O CD40 antigen ligand|CD40-L|T-B cell-activating molecule|T-cell antigen Gp39|TNF-related activation protein|tumor necrosis factor (ligand) superfamily member 5 20121230 -9606 960 CD44 AL133330.1 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 HGNC:1681|MIM:107269|Ensembl:ENSG00000026508|HPRD:00115|Vega:OTTHUMG00000044388 11 11p13 CD44 molecule (Indian blood group) protein-coding CD44 CD44 molecule (Indian blood group) O CD44 antigen|GP90 lymphocyte homing/adhesion receptor|Hermes antigen|cell surface glycoprotein CD44|chondroitin sulfate proteoglycan 8|epican|extracellular matrix receptor III|hematopoietic cell E- and L-selectin ligand|heparan sulfate proteoglycan|homing function and Indian blood group system|hyaluronate receptor|phagocytic glycoprotein 1 20121230 -9606 961 CD47 - IAP|MER6|OA3 HGNC:1682|MIM:601028|Ensembl:ENSG00000196776|HPRD:03017|Vega:OTTHUMG00000044216 3 3q13.1-q13.2 CD47 molecule protein-coding CD47 CD47 molecule O CD47 antigen (Rh-related antigen, integrin-associated signal transducer)|CD47 glycoprotein|Rh-related antigen|antigen identified by monoclonal antibody 1D8|antigenic surface determinant protein OA3|integrin associated protein|integrin-associated protein|integrin-associated signal transducer|leukocyte surface antigen CD47 20121230 -9606 962 CD48 RP11-404F10.3 BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48 HGNC:1683|MIM:109530|Ensembl:ENSG00000117091|HPRD:00177|Vega:OTTHUMG00000024009 1 1q21.3-q22 CD48 molecule protein-coding CD48 CD48 molecule O B-lymphocyte activation marker BLAST-1|BCM1 surface antigen|CD48 antigen|CD48 antigen (B-cell membrane protein)|TCT.1|leukocyte antigen MEM-102 20121230 -9606 963 CD53 - MOX44|TSPAN25 HGNC:1686|MIM:151525|Ensembl:ENSG00000143119|HPRD:01054|Vega:OTTHUMG00000048020 1 1p13 CD53 molecule protein-coding CD53 CD53 molecule O CD53 antigen|CD53 glycoprotein|CD53 tetraspan antigen|antigen MOX44 identified by monoclonal antibody MRC-OX44|cell surface antigen|cell surface glycoprotein CD53|leukocyte surface antigen CD53|tetraspanin-25|transmembrane glycoprotein|tspan-25 20121230 -9606 965 CD58 RP5-1086K13.2 LFA-3|LFA3|ag3 HGNC:1688|MIM:153420|Ensembl:ENSG00000116815|HPRD:01081|Vega:OTTHUMG00000022749 1 1p13 CD58 molecule protein-coding CD58 CD58 molecule O CD58 antigen, (lymphocyte function-associated antigen 3)|lymphocyte function-associated antigen 3|surface glycoprotein LFA-3 20121230 -9606 966 CD59 - 16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20 HGNC:1689|MIM:107271|Ensembl:ENSG00000085063|HPRD:00117|Vega:OTTHUMG00000166270 11 11p13 CD59 molecule, complement regulatory protein protein-coding CD59 CD59 molecule, complement regulatory protein O 1F5 antigen|20 kDa homologous restriction factor|CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344)|CD59 glycoprotein|Ly-6-like protein|MEM43 antigen|T cell-activating protein|human leukocyte antigen MIC11|lymphocytic antigen CD59/MEM43|membrane attack complex (MAC) inhibition factor|membrane attack complex inhibition factor|membrane inhibitor of reactive lysis|protectin|surface anitgen recognized by monoclonal antibody 16.3A5 20121230 -9606 967 CD63 - LAMP-3|ME491|MLA1|OMA81H|TSPAN30 HGNC:1692|MIM:155740|Ensembl:ENSG00000135404|HPRD:01121|Vega:OTTHUMG00000170454 12 12q12-q13 CD63 molecule protein-coding CD63 CD63 molecule O CD63 antigen|CD63 antigen (melanoma 1 antigen)|granulophysin|lysosomal-associated membrane protein 3|lysosome-associated membrane glycoprotein 3|melanoma-associated antigen ME491|melanoma-associated antigen MLA1|ocular melanoma-associated antigen|tetraspanin-30|tspan-30 20121230 -9606 968 CD68 - GP110|LAMP4|SCARD1 HGNC:1693|MIM:153634|Ensembl:ENSG00000129226|HPRD:01093|Vega:OTTHUMG00000108146 17 17p13 CD68 molecule protein-coding CD68 CD68 molecule O CD68 antigen|macrophage antigen CD68|macrosialin|scavenger receptor class D, member 1 20121230 -9606 969 CD69 - AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 HGNC:1694|MIM:107273|Ensembl:ENSG00000110848|HPRD:00119|Vega:OTTHUMG00000168481 12 12p13 CD69 molecule protein-coding CD69 CD69 molecule O C-type lectin domain family 2, member C|CD69 antigen (p60, early T-cell activation antigen)|activation inducer molecule (AIM/CD69)|early T-cell activation antigen p60|early activation antigen CD69|early lymphocyte activation antigen|leukocyte surface antigen Leu-23 20121230 -9606 970 CD70 - CD27L|CD27LG|TNFSF7 HGNC:11937|MIM:602840|Ensembl:ENSG00000125726|HPRD:18515 19 19p13 CD70 molecule protein-coding CD70 CD70 molecule O CD27 ligand|CD27-L|CD70 antigen|Ki-24 antigen|surface antigen CD70|tumor necrosis factor (ligand) superfamily, member 7|tumor necrosis factor ligand superfamily member 7 20121230 -9606 971 CD72 RP11-331F9.9 CD72b|LYB2 HGNC:1696|MIM:107272|Ensembl:ENSG00000137101|HPRD:00118|Vega:OTTHUMG00000019870 9 9p13.3 CD72 molecule protein-coding CD72 CD72 molecule O B-cell differentiation antigen CD72|CD72 antigen|lyb-2 20121230 -9606 972 CD74 - DHLAG|HLADG|II|Ia-GAMMA HGNC:1697|MIM:142790|Ensembl:ENSG00000019582|HPRD:00825|Vega:OTTHUMG00000163559 5 5q32 CD74 molecule, major histocompatibility complex, class II invariant chain protein-coding CD74 CD74 molecule, major histocompatibility complex, class II invariant chain O CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)|HLA class II histocompatibility antigen gamma chain|HLA-DR antigens-associated invariant chain|HLA-DR-gamma|Ia-associated invariant chain|MHC HLA-DR gamma chain|gamma chain of class II antigens|p33 20121230 -9606 973 CD79A - IGA|MB-1 HGNC:1698|MIM:112205|Ensembl:ENSG00000105369|HPRD:00203 19 19q13.2 CD79a molecule, immunoglobulin-associated alpha protein-coding CD79A CD79a molecule, immunoglobulin-associated alpha O B-cell antigen receptor complex-associated protein alpha chain|CD79a antigen (immunoglobulin-associated alpha)|MB-1 membrane glycoprotein|ig-alpha|membrane-bound immunoglobulin-associated protein|surface IgM-associated protein 20121230 -9606 974 CD79B - AGM6|B29|IGB HGNC:1699|MIM:147245|Ensembl:ENSG00000007312|HPRD:00922|Vega:OTTHUMG00000172294 17 17q23 CD79b molecule, immunoglobulin-associated beta protein-coding CD79B CD79b molecule, immunoglobulin-associated beta O B-cell antigen receptor complex-associated protein beta chain|B-cell-specific glycoprotein B29|CD79b antigen (immunoglobulin-associated beta)|Ig-beta|immunoglobulin-associated B29 protein 20121230 -9606 975 CD81 - CVID6|S5.7|TAPA1|TSPAN28 HGNC:1701|MIM:186845|Ensembl:ENSG00000110651|HPRD:08924|Vega:OTTHUMG00000009892 11 11p15.5 CD81 molecule protein-coding CD81 CD81 molecule O 26 kDa cell surface protein TAPA-1|CD81 antigen|CD81 antigen (target of antiproliferative antibody 1)|tetraspanin-28|tspan-28 20121230 -9606 976 CD97 - TM7LN1 HGNC:1711|MIM:601211|Ensembl:ENSG00000123146|HPRD:03130|Vega:OTTHUMG00000182166 19 19p13 CD97 molecule protein-coding CD97 CD97 molecule O CD97 antigen|leukocyte antigen CD97|seven transmembrane helix receptor|seven-span transmembrane protein|seven-transmembrane, heterodimeric receptor associated with inflammation 20121230 -9606 977 CD151 - GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24 HGNC:1630|MIM:602243|Ensembl:ENSG00000177697|HPRD:03763|Vega:OTTHUMG00000133311 11 11p15.5 CD151 molecule (Raph blood group) protein-coding CD151 CD151 molecule (Raph blood group) O CD151 antigen|CD151 antigen (Raph blood group)|hemidesmosomal tetraspanin CD151|membrane glycoprotein SFA-1|platelet surface glycoprotein gp27|platelet-endothelial cell tetraspan antigen 3|platelet-endothelial tetraspan antigen 3|tetraspanin-24|tspan-24 20121230 -9606 978 CDA - CDD HGNC:1712|MIM:123920|Ensembl:ENSG00000158825|HPRD:11744|Vega:OTTHUMG00000002845 1 1p36.2-p35 cytidine deaminase protein-coding CDA cytidine deaminase O cytidine aminohydrolase|cytosine nucleoside deaminase|small cytidine deaminase 20121230 -9606 981 CDAN3 - CDA3|CDAIII HGNC:1715|MIM:105600 15 15q21-q25 congenital dyserythropoietic anemia, type III unknown CDAN3 congenital dyserythropoietic anemia, type III O - 20120622 -9606 982 CDB2 - CDBII|CDTB HGNC:1716|MIM:602082 10 10q23-q24 corneal dystrophy of Bowman layer type II (Thiel-Behnke) unknown CDB2 corneal dystrophy of Bowman layer type II (Thiel-Behnke) O - 20120622 -9606 983 CDK1 - CDC2|CDC28A|P34CDC2 HGNC:1722|MIM:116940|Ensembl:ENSG00000170312|HPRD:00302|Vega:OTTHUMG00000018290 10 10q21.1 cyclin-dependent kinase 1 protein-coding CDK1 cyclin-dependent kinase 1 O cell cycle controller CDC2|cell division control protein 2 homolog|cell division cycle 2, G1 to S and G2 to M|cell division protein kinase 1|p34 protein kinase 20121230 -9606 984 CDK11B - CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PK58|p58|p58CDC2L1|p58CLK-1 HGNC:1729|MIM:176873|Ensembl:ENSG00000248333|HPRD:08909|Vega:OTTHUMG00000078638 1 1p36.33 cyclin-dependent kinase 11B protein-coding CDK11B cyclin-dependent kinase 11B O CDC-related protein kinase p58|PITSLRE serine/threonine-protein kinase CDC2L1|PITSLREA|cell division cycle 2-like 1 (PITSLRE proteins)|cell division cycle 2-like protein kinase 1|cell division protein kinase 11B|galactosyltransferase-associated protein kinase p58/GTA|p58 CLK-1 20121230 -9606 987 LRBA - BGL|CDC4L|CVID8|LAB300|LBA HGNC:1742|MIM:606453|Ensembl:ENSG00000198589|HPRD:07344|Vega:OTTHUMG00000161443 4 4q31.3 LPS-responsive vesicle trafficking, beach and anchor containing protein-coding LRBA LPS-responsive vesicle trafficking, beach and anchor containing O CDC4-like protein|lipopolysaccharide-responsive and beige-like anchor protein|vesicle trafficking, beach and anchor containing 20121230 -9606 988 CDC5L RP1-319D22.1 CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 HGNC:1743|MIM:602868|Ensembl:ENSG00000096401|HPRD:04184|Vega:OTTHUMG00000014767 6 6p21 CDC5 cell division cycle 5-like (S. pombe) protein-coding CDC5L CDC5 cell division cycle 5-like (S. pombe) O Cdc5-related protein|cell division cycle 5-like protein|dJ319D22.1 (CDC5-like protein)|pombe cdc5-related protein 20121230 -9606 989 SEPT7 - CDC10|CDC3|NBLA02942|SEPT7A HGNC:1717|MIM:603151|Ensembl:ENSG00000122545|HPRD:04398|Vega:OTTHUMG00000155063 7 7p14.2 septin 7 protein-coding SEPT7 septin 7 O CDC10 (cell division cycle 10, S. cerevisiae, homolog)|CDC10 protein homolog|septin-7 20121230 -9606 990 CDC6 - CDC18L|HsCDC18|HsCDC6 HGNC:1744|MIM:602627|Ensembl:ENSG00000094804|HPRD:04022|Vega:OTTHUMG00000133324 17 17q21.3 cell division cycle 6 homolog (S. cerevisiae) protein-coding CDC6 cell division cycle 6 homolog (S. cerevisiae) O CDC6 cell division cycle 6 homolog|CDC6-related protein|cdc18-related protein|cell division control protein 6 homolog|p62(cdc6) 20121230 -9606 991 CDC20 - CDC20A|bA276H19.3|p55CDC HGNC:1723|MIM:603618|Ensembl:ENSG00000117399|HPRD:04686|Vega:OTTHUMG00000007420 1 1p34.1 cell division cycle 20 homolog (S. cerevisiae) protein-coding CDC20 cell division cycle 20 homolog (S. cerevisiae) O CDC20 cell division cycle 20 homolog|cell division cycle protein 20 homolog 20121230 -9606 993 CDC25A - CDC25A2 HGNC:1725|MIM:116947|Ensembl:ENSG00000164045|HPRD:00305|Vega:OTTHUMG00000133535 3 3p21 cell division cycle 25 homolog A (S. pombe) protein-coding CDC25A cell division cycle 25 homolog A (S. pombe) O CDC25A2-CAG isoform|M-phase inducer phosphatase 1|cell division cycle 25A|dual specificity phosphatase CDC25A 20121230 -9606 994 CDC25B RP5-1009E24.3 - HGNC:1726|MIM:116949|Ensembl:ENSG00000101224|HPRD:00307|Vega:OTTHUMG00000031764 20 20p13 cell division cycle 25 homolog B (S. pombe) protein-coding CDC25B cell division cycle 25 homolog B (S. pombe) O M-phase inducer phosphatase 2|cell division cycle 25B|dual specificity phosphatase Cdc25B 20121230 -9606 995 CDC25C - CDC25|PPP1R60 HGNC:1727|MIM:157680|Ensembl:ENSG00000158402|HPRD:01146|Vega:OTTHUMG00000129203 5 5q31 cell division cycle 25 homolog C (S. pombe) protein-coding CDC25C cell division cycle 25 homolog C (S. pombe) O M-phase inducer phosphatase 3|cell division cycle 25C|dual specificity phosphatase CDC25C|mitosis inducer CDC25|phosphotyrosine phosphatase|protein phosphatase 1, regulatory subunit 60 20121230 -9606 996 CDC27 - ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|HNUC|NUC2 HGNC:1728|MIM:116946|Ensembl:ENSG00000004897|HPRD:00304|Vega:OTTHUMG00000166429 17 17q21.32 cell division cycle 27 homolog (S. cerevisiae) protein-coding CDC27 cell division cycle 27 homolog (S. cerevisiae) O CDC27 homolog|H-NUC|anaphase promoting complex subunit 3|anaphase-promoting complex subunit 3|anaphase-promoting complex, protein 3|cell division cycle protein 27 homolog|nuc2 homolog 20121230 -9606 997 CDC34 - E2-CDC34|UBC3|UBCH3|UBE2R1 HGNC:1734|MIM:116948|Ensembl:ENSG00000099804|HPRD:00306|Vega:OTTHUMG00000180558 19 19p13.3 cell division cycle 34 homolog (S. cerevisiae) protein-coding CDC34 cell division cycle 34 homolog (S. cerevisiae) O ubiquitin carrier protein|ubiquitin-conjugating enzyme E2 R1|ubiquitin-conjugating enzyme E2-32 KDA complementing|ubiquitin-conjugating enzyme E2-CDC34|ubiquitin-protein ligase R1 20121230 -9606 998 CDC42 RP1-224A6.5 CDC42Hs|G25K HGNC:1736|MIM:116952|Ensembl:ENSG00000070831|HPRD:00309|Vega:OTTHUMG00000002753 1 1p36.1 cell division cycle 42 (GTP binding protein, 25kDa) protein-coding CDC42 cell division cycle 42 (GTP binding protein, 25kDa) O G25K GTP-binding protein|GTP-binding protein, 25kD|cell division control protein 42 homolog|dJ224A6.1.1 (cell division cycle 42 (GTP-binding protein, 25kD))|dJ224A6.1.2 (cell division cycle 42 (GTP-binding protein, 25kD))|growth-regulating protein|small GTP binding protein CDC42 20121230 -9606 999 CDH1 - Arc-1|CD324|CDHE|ECAD|LCAM|UVO HGNC:1748|MIM:192090|Ensembl:ENSG00000039068|HPRD:01885|Vega:OTTHUMG00000137561 16 16q22.1 cadherin 1, type 1, E-cadherin (epithelial) protein-coding CDH1 cadherin 1, type 1, E-cadherin (epithelial) O CAM 120/80|E-Cadherin|cadherin 1, E-cadherin (epithelial)|cadherin-1|calcium-dependent adhesion protein, epithelial|cell-CAM 120/80|epithelial cadherin|uvomorulin 20121230 -9606 1000 CDH2 - CD325|CDHN|CDw325|NCAD HGNC:1759|MIM:114020|Ensembl:ENSG00000170558|HPRD:00226|Vega:OTTHUMG00000059940 18 18q11.2 cadherin 2, type 1, N-cadherin (neuronal) protein-coding CDH2 cadherin 2, type 1, N-cadherin (neuronal) O N-cadherin 1|cadherin 2, N-cadherin (neuronal)|cadherin-2|calcium-dependent adhesion protein, neuronal|neural cadherin|neural-cadherin 20121230 -9606 1001 CDH3 - CDHP|HJMD|PCAD HGNC:1762|MIM:114021|Ensembl:ENSG00000062038|HPRD:00227|Vega:OTTHUMG00000137560 16 16q22.1 cadherin 3, type 1, P-cadherin (placental) protein-coding CDH3 cadherin 3, type 1, P-cadherin (placental) O cadherin-3|calcium-dependent adhesion protein, placental 20121230 -9606 1002 CDH4 - CAD4|RCAD HGNC:1763|MIM:603006|Ensembl:ENSG00000179242|HPRD:04304|Vega:OTTHUMG00000032890 20 20q13.3 cadherin 4, type 1, R-cadherin (retinal) protein-coding CDH4 cadherin 4, type 1, R-cadherin (retinal) O R-CAD|R-cadherin|cadherin 4, type 1, preproprotein|cadherin-4|retinal cadherin 20121230 -9606 1003 CDH5 - 7B4|CD144 HGNC:1764|MIM:601120|Ensembl:ENSG00000179776|HPRD:03075|Vega:OTTHUMG00000137495 16 16q22.1 cadherin 5, type 2 (vascular endothelium) protein-coding CDH5 cadherin 5, type 2 (vascular endothelium) O 7B4 antigen|VE-cadherin|cadherin 5, type 2, VE-cadherin (vascular epithelium)|cadherin-5|cd144 antigen|endothelial-specific cadherin|vascular endothelial cadherin 20121230 -9606 1004 CDH6 - CAD6|KCAD HGNC:1765|MIM:603007|Ensembl:ENSG00000113361|HPRD:04305|Vega:OTTHUMG00000090673 5 5p13.3 cadherin 6, type 2, K-cadherin (fetal kidney) protein-coding CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) O cadherin-6 20121230 -9606 1005 CDH7 - CDH7L1 HGNC:1766|MIM:605806|Ensembl:ENSG00000081138|HPRD:12049|Vega:OTTHUMG00000132800 18 18q22.1 cadherin 7, type 2 protein-coding CDH7 cadherin 7, type 2 O cadherin-7 20121230 -9606 1006 CDH8 - Nbla04261 HGNC:1767|MIM:603008|Ensembl:ENSG00000150394|HPRD:04306|Vega:OTTHUMG00000137493 16 16q22.1 cadherin 8, type 2 protein-coding CDH8 cadherin 8, type 2 O cadherin-8 20121230 -9606 1007 CDH9 - - HGNC:1768|MIM:609974|Ensembl:ENSG00000113100|HPRD:13021|Vega:OTTHUMG00000090671 5 5p14 cadherin 9, type 2 (T1-cadherin) protein-coding CDH9 cadherin 9, type 2 (T1-cadherin) O T1-cadherin|cadherin-9 20121230 -9606 1008 CDH10 - - HGNC:1749|MIM:604555|Ensembl:ENSG00000040731|HPRD:05187|Vega:OTTHUMG00000090667 5 5p14.2 cadherin 10, type 2 (T2-cadherin) protein-coding CDH10 cadherin 10, type 2 (T2-cadherin) O T2-cadherin|cadherin-10 20121230 -9606 1009 CDH11 - CAD11|CDHOB|OB|OSF-4 HGNC:1750|MIM:600023|Ensembl:ENSG00000140937|HPRD:08960|Vega:OTTHUMG00000137494 16 16q21 cadherin 11, type 2, OB-cadherin (osteoblast) protein-coding CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) O cadherin-11 20121230 -9606 1010 CDH12 - CDHB HGNC:1751|MIM:600562|Ensembl:ENSG00000154162|HPRD:11081|Vega:OTTHUMG00000090591 5 5p14.3 cadherin 12, type 2 (N-cadherin 2) protein-coding CDH12 cadherin 12, type 2 (N-cadherin 2) O Br-cadherin|N-cadherin 2|brain cadherin|brain-cadherin|cadherin, neural type, 2|cadherin-12|neural type cadherin 2|neuronal cadherin 2 20121230 -9606 1011 CDH12P2 - C41-CAD|CDH12P HGNC:1752 5 5q13.1 cadherin 12 (N-cadherin 2) pseudogene 2 pseudo CDH12P2 cadherin 12 (N-cadherin 2) pseudogene 2 O - 20121230 -9606 1012 CDH13 - CDHH|P105 HGNC:1753|MIM:601364|Ensembl:ENSG00000140945|HPRD:03219|Vega:OTTHUMG00000176635 16 16q23.3 cadherin 13, H-cadherin (heart) protein-coding CDH13 cadherin 13, H-cadherin (heart) O H-cadherin|T-cad|T-cadherin|cadherin-13|heart cadherin 20121230 -9606 1013 CDH15 - CDH14|CDH3|CDHM|MCAD|MRD3 HGNC:1754|MIM:114019|Ensembl:ENSG00000129910|HPRD:00225|Vega:OTTHUMG00000138045 16 16q24.3 cadherin 15, type 1, M-cadherin (myotubule) protein-coding CDH15 cadherin 15, type 1, M-cadherin (myotubule) O cadherin-14|cadherin-15|cadherin-3|muscle-cadherin 20121230 -9606 1014 CDH16 UNQ695/PRO1340 - HGNC:1755|MIM:603118|Ensembl:ENSG00000166589|HPRD:11929|Vega:OTTHUMG00000137518 16 16q22.1 cadherin 16, KSP-cadherin protein-coding CDH16 cadherin 16, KSP-cadherin O KSP-cadherin|cadherin-16|kidney-specific cadherin 20121230 -9606 1015 CDH17 - CDH16|HPT-1|HPT1 HGNC:1756|MIM:603017|Ensembl:ENSG00000079112|HPRD:04312|Vega:OTTHUMG00000164391 8 8q22.1 cadherin 17, LI cadherin (liver-intestine) protein-coding CDH17 cadherin 17, LI cadherin (liver-intestine) O HPT-1 cadherin|LI cadherin|LI-cadherin|cadherin-16|cadherin-17|human intestinal peptide-associated transporter HPT-1|human peptide transporter 1|intestinal peptide-associated transporter HPT-1|liver-intestine cadherin 20121230 -9606 1016 CDH18 - CDH14|CDH14L|CDH24 HGNC:1757|MIM:603019|Ensembl:ENSG00000145526|HPRD:04314|Vega:OTTHUMG00000090578 5 5p14.3 cadherin 18, type 2 protein-coding CDH18 cadherin 18, type 2 O cadherin-14|cadherin-18|cadherin-like 24|ey-cadherin 20121230 -9606 1017 CDK2 - p33(CDK2) HGNC:1771|MIM:116953|Ensembl:ENSG00000123374|HPRD:00310|Vega:OTTHUMG00000170575 12 12q13 cyclin-dependent kinase 2 protein-coding CDK2 cyclin-dependent kinase 2 O cdc2-related protein kinase|cell devision kinase 2|cell division protein kinase 2|p33 protein kinase 20121230 -9606 1018 CDK3 - - HGNC:1772|MIM:123828|Ensembl:ENSG00000250506|HPRD:00446|Vega:OTTHUMG00000154861 17 17q25.1 cyclin-dependent kinase 3 protein-coding CDK3 cyclin-dependent kinase 3 O cell division protein kinase 3 20121230 -9606 1019 CDK4 - CMM3|PSK-J3 HGNC:1773|MIM:123829|Ensembl:ENSG00000135446|HPRD:00447|Vega:OTTHUMG00000170382 12 12q14 cyclin-dependent kinase 4 protein-coding CDK4 cyclin-dependent kinase 4 O cell division protein kinase 4 20121230 -9606 1020 CDK5 - PSSALRE HGNC:1774|MIM:123831|Ensembl:ENSG00000164885|HPRD:00449|Vega:OTTHUMG00000158414 7 7q36 cyclin-dependent kinase 5 protein-coding CDK5 cyclin-dependent kinase 5 O TPKII catalytic subunit|cell division protein kinase 5|protein kinase CDK5 splicing|serine/threonine-protein kinase PSSALRE|tau protein kinase II catalytic subunit 20121230 -9606 1021 CDK6 - PLSTIRE HGNC:1777|MIM:603368|Ensembl:ENSG00000105810|HPRD:04533|Vega:OTTHUMG00000131697 7 7q21-q22 cyclin-dependent kinase 6 protein-coding CDK6 cyclin-dependent kinase 6 O cell division protein kinase 6|serine/threonine-protein kinase PLSTIRE 20121230 -9606 1022 CDK7 - CAK1|CDKN7|HCAK|MO15|STK1|p39MO15 HGNC:1778|MIM:601955|Ensembl:ENSG00000134058|HPRD:15993|Vega:OTTHUMG00000099358 5 5q12.1 cyclin-dependent kinase 7 protein-coding CDK7 cyclin-dependent kinase 7 O 39 KDa protein kinase|CAK|CDK-activating kinase 1|TFIIH basal transcription factor complex kinase subunit|cell division protein kinase 7|cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)|homolog of Xenopus MO15 Cdk-activating kinase|kinase subunit of CAK|p39 Mo15|protein kinase|serine/threonine kinase stk1|serine/threonine protein kinase 1|serine/threonine protein kinase MO15|serine/threonine-protein kinase 1 20121230 -9606 1023 CDL2 - - HGNC:1793 - - Cornelia de Lange syndrome 2 unknown CDL2 Cornelia de Lange syndrome 2 O - 20110215 -9606 1024 CDK8 - K35 HGNC:1779|MIM:603184|Ensembl:ENSG00000132964|HPRD:04422|Vega:OTTHUMG00000016617 13 13q12 cyclin-dependent kinase 8 protein-coding CDK8 cyclin-dependent kinase 8 O CDK8 protein kinase|cell division protein kinase 8|mediator complex subunit CDK8|mediator of RNA polymerase II transcription subunit CDK8|protein kinase K35 20121230 -9606 1025 CDK9 RP11-228B15.5 C-2k|CDC2L4|CTK1|PITALRE|TAK HGNC:1780|MIM:603251|Ensembl:ENSG00000136807|HPRD:16016|Vega:OTTHUMG00000020715 9 9q34.1 cyclin-dependent kinase 9 protein-coding CDK9 cyclin-dependent kinase 9 O CDC2-related kinase|cell division cycle 2-like protein kinase 4|cell division protein kinase 9|serine/threonine protein kinase PITALRE|serine/threonine-protein kinase PITALRE|tat-associated kinase complex catalytic subunit 20121230 -9606 1026 CDKN1A - CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1 HGNC:1784|MIM:116899|Ensembl:ENSG00000124762|HPRD:00298|Vega:OTTHUMG00000014603 6 6p21.2 cyclin-dependent kinase inhibitor 1A (p21, Cip1) protein-coding CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) O CDK-interacting protein 1|CDK-interaction protein 1|DNA synthesis inhibitor|cyclin-dependent kinase inhibitor 1|melanoma differentiation associated protein 6|wild-type p53-activated fragment 1 20121230 -9606 1027 CDKN1B - CDKN4|KIP1|MEN1B|MEN4|P27KIP1 HGNC:1785|MIM:600778|Ensembl:ENSG00000111276|HPRD:02867|Vega:OTTHUMG00000149914 12 12p13.1-p12 cyclin-dependent kinase inhibitor 1B (p27, Kip1) protein-coding CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) O cyclin-dependent kinase inhibitor 1B 20121230 -9606 1028 CDKN1C - BWCR|BWS|IMAGE|KIP2|WBS|p57 HGNC:1786|MIM:600856|Ensembl:ENSG00000129757|HPRD:02913|Vega:OTTHUMG00000010040 11 11p15.5 cyclin-dependent kinase inhibitor 1C (p57, Kip2) protein-coding CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2) O cyclin-dependent kinase inhibitor 1C|cyclin-dependent kinase inhibitor p57|p57Kip2 20121230 -9606 1029 CDKN2A - ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 HGNC:1787|MIM:600160|Ensembl:ENSG00000147889|HPRD:02542|Vega:OTTHUMG00000019686 9 9p21 cyclin-dependent kinase inhibitor 2A protein-coding CDKN2A cyclin-dependent kinase inhibitor 2A O CDK4 inhibitor p16-INK4|cell cycle negative regulator beta|cyclin-dependent kinase 4 inhibitor A|cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)|multiple tumor suppressor 1 20121230 -9606 1030 CDKN2B RP11-149I2.1 CDK4I|INK4B|MTS2|P15|TP15|p15INK4b HGNC:1788|MIM:600431|Ensembl:ENSG00000147883|HPRD:02696|Vega:OTTHUMG00000019691 9 9p21 cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) protein-coding CDKN2B cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) O CDK inhibitory protein|CDK4B inhibitor|MTS-2|cyclin-dependent kinase 4 inhibitor B|cyclin-dependent kinases 4 and 6 binding protein|multiple tumor suppressor 2|p14-INK4b|p14_CDK inhibitor|p14_INK4B|p15 CDK inhibitor|p15-INK4b|p15_INK4B 20121230 -9606 1031 CDKN2C RP11-278J17.2 INK4C|p18|p18-INK4C HGNC:1789|MIM:603369|Ensembl:ENSG00000123080|HPRD:04534|Vega:OTTHUMG00000008046 1 1p32 cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) protein-coding CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) O CDK6 inhibitor p18|cyclin-dependent inhibitor|cyclin-dependent kinase 4 inhibitor C|cyclin-dependent kinase 6 inhibitor p18|p18-INK6 20121230 -9606 1032 CDKN2D - INK4D|p19|p19-INK4D HGNC:1790|MIM:600927|Ensembl:ENSG00000129355|HPRD:02957|Vega:OTTHUMG00000180583 19 19p13 cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) protein-coding CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) O CDK inhibitor p19INK4d|cell cycle inhibitor, Nur77 associating protein|cyclin-dependent kinase 4 inhibitor D|cyclin-dependent kinase 4 inhibitor D p19|inhibitor of cyclin-dependent kinase 4d 20121230 -9606 1033 CDKN3 - CDI1|CIP2|KAP|KAP1 HGNC:1791|MIM:123832|Ensembl:ENSG00000100526|HPRD:00450|Vega:OTTHUMG00000140302 14 14q22 cyclin-dependent kinase inhibitor 3 protein-coding CDKN3 cyclin-dependent kinase inhibitor 3 O CDK2-associated dual specificity phosphatase|CDK2-associated dual-specificity phosphatase|Cdk-associated protein phosphatase|cyclin-dependent kinase interacting protein 2|cyclin-dependent kinase interactor 1|cyclin-dependent kinase-interacting protein 2|kinase associated phosphatase|kinase-associated phosphatase 20121230 -9606 1036 CDO1 - - HGNC:1795|MIM:603943|Ensembl:ENSG00000129596|HPRD:06806|Vega:OTTHUMG00000128891 5 5q23.2 cysteine dioxygenase, type I protein-coding CDO1 cysteine dioxygenase, type I O CDO|CDO-I|cysteine dioxygenase type 1 20121230 -9606 1038 CDR1 RP1-177G6.1 CDR|CDR34|CDR62A HGNC:1798|MIM:302650|Ensembl:ENSG00000184258|HPRD:02361|Vega:OTTHUMG00000137398 X Xq27.1-q27.2 cerebellar degeneration-related protein 1, 34kDa protein-coding CDR1 cerebellar degeneration-related protein 1, 34kDa O cerebellar degeneration-related antigen 1 20121230 -9606 1039 CDR2 - CDR62|Yo HGNC:1799|MIM:117340|Ensembl:ENSG00000140743|HPRD:06681|Vega:OTTHUMG00000175463 16 16p12.3 cerebellar degeneration-related protein 2, 62kDa protein-coding CDR2 cerebellar degeneration-related protein 2, 62kDa O Yo paraneoplastic antigen|cerebellar degeneration-related protein 2|major Yo paraneoplastic antigen|paraneoplastic cerebellar degeneration-associated antigen 20121230 -9606 1040 CDS1 - CDS HGNC:1800|MIM:603548|Ensembl:ENSG00000163624|HPRD:11944|Vega:OTTHUMG00000130428 4 4q21.23 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 protein-coding CDS1 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 O CDP-DAG synthase 1|CDP-DG synthase 1|CDP-DG synthetase 1|CDP-diacylglycerol synthase 1|CDP-diglyceride pyrophosphorylase 1|CDP-diglyceride synthase 1|CDP-diglyceride synthetase 1|CDS 1|CTP:phosphatidate cytidylyltransferase 1|phosphatidate cytidylyltransferase 1 20121230 -9606 1041 CDSN DADB-141O4.5 D6S586E|HTSS|HTSS1|PSS|S HGNC:1802|MIM:602593|Ensembl:ENSG00000204539|HPRD:03998|Vega:OTTHUMG00000031150 6 6p21.3 corneodesmosin protein-coding CDSN corneodesmosin O differentiated keratinocyte S protein 20121230 -9606 1043 CD52 - CDW52 HGNC:1804|MIM:114280|Ensembl:ENSG00000169442|HPRD:00257|Vega:OTTHUMG00000003491 1 1p36 CD52 molecule protein-coding CD52 CD52 molecule O CAMPATH-1 antigen|CD52 antigen (CAMPATH-1 antigen)|CDW52 antigen (CAMPATH-1 antigen)|cambridge pathology 1 antigen|epididymal secretory protein E5|he5|human epididymis-specific protein 5 20121230 -9606 1044 CDX1 - - HGNC:1805|MIM:600746|Ensembl:ENSG00000113722|HPRD:02849|Vega:OTTHUMG00000169772 5 5q32 caudal type homeobox 1 protein-coding CDX1 caudal type homeobox 1 O caudal type homeo box transcription factor 1|caudal type homeobox transcription factor 1|caudal-type homeobox protein 1|caudal-type homeobox protein CDX1|homeobox protein CDX-1 20121230 -9606 1045 CDX2 - CDX-3|CDX3 HGNC:1806|MIM:600297|Ensembl:ENSG00000165556|HPRD:02622|Vega:OTTHUMG00000016640 13 13q12.3 caudal type homeobox 2 protein-coding CDX2 caudal type homeobox 2 O caudal type homeo box transcription factor 2|caudal type homeobox transcription factor 2|caudal-type homeobox protein 2|homeobox protein CDX-2 20121230 -9606 1046 CDX4 - - HGNC:1808|MIM:300025|Ensembl:ENSG00000131264|HPRD:02065|Vega:OTTHUMG00000021831 X Xq13.2 caudal type homeobox 4 protein-coding CDX4 caudal type homeobox 4 O caudal type homeobox transcription factor 4|caudal-type homeobox protein 4|homeobox protein CDX-4 20121230 -9606 1047 CLGN - - HGNC:2060|MIM:601858|Ensembl:ENSG00000153132|HPRD:03513|Vega:OTTHUMG00000133414 4 4q28.3-q31.1 calmegin protein-coding CLGN calmegin O - 20121230 -9606 1048 CEACAM5 - CD66e|CEA HGNC:1817|MIM:114890|Ensembl:ENSG00000105388|HPRD:00274|Vega:OTTHUMG00000151061 19 19q13.1-q13.2 carcinoembryonic antigen-related cell adhesion molecule 5 protein-coding CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 O meconium antigen 100 20121230 -9606 1050 CEBPA - C/EBP-alpha|CEBP HGNC:1833|MIM:116897|Ensembl:ENSG00000245848|HPRD:00296|Vega:OTTHUMG00000161461 19 19q13.1 CCAAT/enhancer binding protein (C/EBP), alpha protein-coding CEBPA CCAAT/enhancer binding protein (C/EBP), alpha O CCAAT/enhancer-binding protein alpha 20121230 -9606 1051 CEBPB PP9092 C/EBP-beta|CRP2|IL6DBP|LAP|NF-IL6|TCF5 HGNC:1834|MIM:189965|Ensembl:ENSG00000172216|HPRD:01801|Vega:OTTHUMG00000032715 20 20q13.1 CCAAT/enhancer binding protein (C/EBP), beta protein-coding CEBPB CCAAT/enhancer binding protein (C/EBP), beta O CCAAT/enhancer-binding protein beta|TCF-5|interleukin 6-dependent DNA-binding protein|liver-enriched transcriptional activator protein|nuclear factor NF-IL6|nuclear factor of interleukin 6|transcription factor 5 20121230 -9606 1052 CEBPD - C/EBP-delta|CELF|CRP3|NF-IL6-beta HGNC:1835|MIM:116898|Ensembl:ENSG00000221869|HPRD:00297|Vega:OTTHUMG00000162290 8 8p11.2-p11.1 CCAAT/enhancer binding protein (C/EBP), delta protein-coding CEBPD CCAAT/enhancer binding protein (C/EBP), delta O CCAAT/enhancer-binding protein delta|c/EBP delta|nuclear factor NF-IL6-beta 20121230 -9606 1053 CEBPE - C/EBP-epsilon|CRP1 HGNC:1836|MIM:600749|Ensembl:ENSG00000092067|HPRD:02852|Vega:OTTHUMG00000028719 14 14q11.2 CCAAT/enhancer binding protein (C/EBP), epsilon protein-coding CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon O CCAAT/enhancer-binding protein epsilon|c/EBP epsilon 20121230 -9606 1054 CEBPG - GPE1BP|IG/EBP-1 HGNC:1837|MIM:138972|Ensembl:ENSG00000153879|HPRD:00738|Vega:OTTHUMG00000180469 19 19q13.11 CCAAT/enhancer binding protein (C/EBP), gamma protein-coding CEBPG CCAAT/enhancer binding protein (C/EBP), gamma O CCAAT/enhancer-binding protein gamma|c/EBP gamma 20121230 -9606 1055 CECR - CES HGNC:1838|MIM:115470 22 22pter-q11 cat eye syndrome chromosome region unknown CECR cat eye syndrome chromosome region O - 20120719 -9606 1056 CEL - BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8 HGNC:1848|MIM:114840|Ensembl:ENSG00000170835|HPRD:07509|Vega:OTTHUMG00000020855 9 9q34.3 carboxyl ester lipase (bile salt-stimulated lipase) protein-coding CEL carboxyl ester lipase (bile salt-stimulated lipase) O bile salt-activated lipase|bile salt-dependent lipase, oncofetal isoform|bile-salt-activated lipase|bucelipase|carboxyl ester hydrolase|cholesterol esterase|fetoacinar pancreatic protein|lysophospholipase, pancreatic|pancreatic lysophospholipase|sterol esterase 20121230 -9606 1057 CELP - CELL|cell1|cell2|cell3 HGNC:1849 9 9q34.3 carboxyl ester lipase pseudogene pseudo CELP carboxyl ester lipase pseudogene O - 20121230 -9606 1058 CENPA - CENP-A|CenH3 HGNC:1851|MIM:117139|Ensembl:ENSG00000115163|HPRD:00313|Vega:OTTHUMG00000097073 2 2p23.3 centromere protein A protein-coding CENPA centromere protein A O centromere autoantigen A|centromere protein A, 17kDa|centromere-specific histone|histone H3-like centromeric protein A 20121230 -9606 1059 CENPB - - HGNC:1852|MIM:117140|Ensembl:ENSG00000125817|HPRD:00314|Vega:OTTHUMG00000031761 20 20p13 centromere protein B, 80kDa protein-coding CENPB centromere protein B, 80kDa O CENP-B|centromere autoantigen B|major centromere autoantigen B 20121230 -9606 1060 CENPC1 - CENP-C|CENPC|MIF2|hcp-4 HGNC:1854|MIM:117141|Ensembl:ENSG00000145241|HPRD:00315|Vega:OTTHUMG00000160735 4 4q13.2 centromere protein C 1 protein-coding CENPC1 centromere protein C 1 O CENP-C 1|centromere autoantigen C|centromere autoantigen C1|interphase centromere complex protein 7 20121230 -9606 1061 CENPC1P1 - CENPC|CENPC2 HGNC:1855 12 12q21.33 centromere protein C 1 pseudogene 1 pseudo CENPC1P1 centromere protein C 1 pseudogene 1 O - 20121230 -9606 1062 CENPE - CENP-E|KIF10|PPP1R61 HGNC:1856|MIM:117143|Ensembl:ENSG00000138778|HPRD:00316|Vega:OTTHUMG00000160980 4 4q24-q25 centromere protein E, 312kDa protein-coding CENPE centromere protein E, 312kDa O Centromere autoantigen E (312kD)|centromere-associated protein E|kinesin family member 10|kinesin-related protein CENPE|protein phosphatase 1, regulatory subunit 61 20121230 -9606 1063 CENPF RP11-262H5.1 CENF|PRO1779|hcp-1 HGNC:1857|MIM:600236|Ensembl:ENSG00000117724|HPRD:02582|Vega:OTTHUMG00000036955 1 1q41 centromere protein F, 350/400kDa (mitosin) protein-coding CENPF centromere protein F, 350/400kDa (mitosin) O AH antigen|CENP-F kinetochore protein|cell-cycle-dependent 350K nuclear protein|centromere protein F|centromere protein F, 350/400ka (mitosin)|kinetochore protein CENPF|mitosin 20121230 -9606 1066 CES1 - ACAT|CE-1|CEH|CES2|HMSE|HMSE1|PCE-1|REH|SES1|TGH|hCE-1 HGNC:1863|MIM:114835|Ensembl:ENSG00000198848|HPRD:00268|Vega:OTTHUMG00000176718 16 16q22.2 carboxylesterase 1 protein-coding CES1 carboxylesterase 1 O acyl coenzyme A:cholesterol acyltransferase|acyl-coenzyme A:cholesterol acyltransferase|brain carboxylesterase hBr1|carboxylesterase 1 (monocyte/macrophage serine esterase 1)|carboxylesterase 2 (liver)|cholesteryl ester hydrolase|cocaine carboxylesterase|egasyn|human monocyte/macrophage serine esterase 1|liver carboxylesterase 1|methylumbelliferyl-acetate deacetylase 1|monocyte/macrophage serine esterase|retinyl ester hydrolase|serine esterase 1|triacylglycerol hydrolase 20121230 -9606 1068 CETN1 - CEN1|CETN HGNC:1866|MIM:603187|HPRD:04425 18 18p11.32 centrin, EF-hand protein, 1 protein-coding CETN1 centrin, EF-hand protein, 1 O EF-hand protein|calcium binding protein|caltractin|centrin-1 20121230 -9606 1069 CETN2 - CALT|CEN2 HGNC:1867|MIM:300006|Ensembl:ENSG00000147400|HPRD:02051|Vega:OTTHUMG00000024246 X Xq28 centrin, EF-hand protein, 2 protein-coding CETN2 centrin, EF-hand protein, 2 O caltractin (20kD calcium-binding protein)|centrin-2 20121230 -9606 1070 CETN3 - CEN3 HGNC:1868|MIM:602907|Ensembl:ENSG00000153140|HPRD:04216|Vega:OTTHUMG00000131326 5 5q14.3 centrin, EF-hand protein, 3 protein-coding CETN3 centrin, EF-hand protein, 3 O CDC31 yeast homolog|EF-hand superfamily member|centrin, EF-hand protein, 3 (CDC31 homolog, yeast)|centrin-3 20121230 -9606 1071 CETP - BPIFF|HDLCQ10 HGNC:1869|MIM:118470|Ensembl:ENSG00000087237|HPRD:00325|Vega:OTTHUMG00000133279 16 16q21 cholesteryl ester transfer protein, plasma protein-coding CETP cholesteryl ester transfer protein, plasma O BPI fold containing family F|cholesteryl ester transfer protein|lipid transfer protein I 20121230 -9606 1072 CFL1 - CFL HGNC:1874|MIM:601442|Ensembl:ENSG00000172757|HPRD:03261|Vega:OTTHUMG00000166602 11 11q13 cofilin 1 (non-muscle) protein-coding CFL1 cofilin 1 (non-muscle) O 18 kDa phosphoprotein|cofilin, non-muscle isoform|cofilin-1|p18 20121230 -9606 1073 CFL2 - NEM7 HGNC:1875|MIM:601443|Ensembl:ENSG00000165410|HPRD:03262|Vega:OTTHUMG00000029536 14 14q12 cofilin 2 (muscle) protein-coding CFL2 cofilin 2 (muscle) O cofilin, muscle isoform|cofilin-2|nemaline myopathy type 7 20121230 -9606 1074 CFL1P5 - CFLL1|CFLP5 HGNC:1877 5 5q13.2 cofilin 1 (non-muscle) pseudogene 5 pseudo CFL1P5 cofilin 1 (non-muscle) pseudogene 5 O - 20121230 -9606 1075 CTSC - CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PLS HGNC:2528|MIM:602365|Ensembl:ENSG00000109861|HPRD:03841|Vega:OTTHUMG00000167290 11 11q14.2 cathepsin C protein-coding CTSC cathepsin C O cathepsin J|dipeptidyl peptidase 1|dipeptidyl peptidase I|dipeptidyl transferase|dipeptidyl-peptidase I 20121230 -9606 1080 CFTR tcag7.78 ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 HGNC:1884|MIM:602421|Ensembl:ENSG00000001626|HPRD:03883|Vega:OTTHUMG00000023076 7 7q31.2 cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) protein-coding CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) O cAMP-dependent chloride channel|channel conductance-controlling ATPase|cystic fibrosis transmembrane conductance regulator 20121230 -9606 1081 CGA RP11-156F23.1 CG-ALPHA|FSHA|GPHA1|GPHa|HCG|LHA|TSHA HGNC:1885|MIM:118850|Ensembl:ENSG00000135346|HPRD:00342|Vega:OTTHUMG00000015161 6 6q12-q21 glycoprotein hormones, alpha polypeptide protein-coding CGA glycoprotein hormones, alpha polypeptide O FSH-alpha|LSH-alpha|TSH-alpha|anterior pituitary glycoprotein hormones common subunit alpha|choriogonadotropin alpha chain|chorionic gonadotrophin subunit alpha|chorionic gonadotropin, alpha polypeptide|follicle-stimulating hormone alpha chain|follicle-stimulating hormone alpha subunit|follitropin alpha chain|glycoprotein hormones alpha chain|luteinizing hormone alpha chain|lutropin alpha chain|thyroid-stimulating hormone alpha chain|thyrotropin alpha chain 20121230 -9606 1082 CGB - CGB3|CGB5|CGB7|CGB8|hCGB HGNC:1886|MIM:118860|Ensembl:ENSG00000104827|HPRD:00343|Vega:OTTHUMG00000180605 19 19q13.32 chorionic gonadotropin, beta polypeptide protein-coding CGB chorionic gonadotropin, beta polypeptide O CG-beta|choriogonadotropin subunit beta|chorionic gonadotrophin chain beta|chorionic gonadotropin beta 3 subunit|chorionic gonadotropin beta chain|chorionic gonadotropin beta subunit 20121230 -9606 1083 CGF1 - - HGNC:1887|MIM:300082 X Xp11.22-qter cognitive function 1, social unknown CGF1 cognitive function 1, social O - 20120622 -9606 1084 CEACAM3 - CD66D|CEA|CGM1|W264|W282 HGNC:1815|MIM:609142|Ensembl:ENSG00000170956|HPRD:16450|Vega:OTTHUMG00000150142 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 3 protein-coding CEACAM3 carcinoembryonic antigen-related cell adhesion molecule 3 O CD66d antigen|carcinoembryonic antigen CGM1|carcinoembryonic antigen gene family member 1|nonspecific cross-reacting antigen 20121230 -9606 1085 CEACAMP5 - CEACAM26P|CGM12 HGNC:1827 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 5 pseudo CEACAMP5 carcinoembryonic antigen-related cell adhesion molecule pseudogene 5 O - 20121230 -9606 1086 CEACAMP11 - CEACAM32P|CGM18 HGNC:1823 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 11 pseudo CEACAMP11 carcinoembryonic antigen-related cell adhesion molecule pseudogene 11 O - 20121230 -9606 1087 CEACAM7 - CEA|CGM2 HGNC:1819|Ensembl:ENSG00000007306|HPRD:07629|Vega:OTTHUMG00000151063 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 7 protein-coding CEACAM7 carcinoembryonic antigen-related cell adhesion molecule 7 O carcinoembryonic antigen CGM2|carcinoembryonic antigen gene family member 2 20121230 -9606 1088 CEACAM8 - CD66b|CD67|CGM6|NCA-95 HGNC:1820|Ensembl:ENSG00000124469|HPRD:07630|Vega:OTTHUMG00000151124 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 8 protein-coding CEACAM8 carcinoembryonic antigen-related cell adhesion molecule 8 O CD67 antigen|carcinoembryonic antigen CGM6|carcinoembryonic antigen gene family member 6|non-specific cross-reacting antigen NCA-95 20121230 -9606 1089 CEACAM4 - CGM7|CGM7_HUMAN|NCA HGNC:1816|Ensembl:ENSG00000105352|HPRD:07628|Vega:OTTHUMG00000151065 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 protein-coding CEACAM4 carcinoembryonic antigen-related cell adhesion molecule 4 O Nonspecific cross-reacting antigen (NCA)|carcinoembryonic antigen CGM7|carcinoembryonic antigen gene family member 7|non-specific cross-reacting antigen W236|nonspecific cross-reacting antigen W236 20121230 -9606 1090 CEACAMP1 - CEACAM22P|CGM8 HGNC:1821 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 1 pseudo CEACAMP1 carcinoembryonic antigen-related cell adhesion molecule pseudogene 1 O - 20121230 -9606 1091 CEACAMP2 - CEACAM23P|CGM9 HGNC:1824 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 2 pseudo CEACAMP2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 2 O - 20121230 -9606 1092 CEACAMP3 - CEACAM24P|CGM10 HGNC:1825 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 3 pseudo CEACAMP3 carcinoembryonic antigen-related cell adhesion molecule pseudogene 3 O - 20121230 -9606 1093 CEACAMP4 - CEACAM25P|CGM11 HGNC:1826 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 4 pseudo CEACAMP4 carcinoembryonic antigen-related cell adhesion molecule pseudogene 4 O - 20121230 -9606 1094 CEACAMP6 - CEACAM27P|CGM13 HGNC:1828 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 6 pseudo CEACAMP6 carcinoembryonic antigen-related cell adhesion molecule pseudogene 6 O - 20121230 -9606 1095 CEACAMP7 - CEACAM28P|CGM14 HGNC:1829 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 7 pseudo CEACAMP7 carcinoembryonic antigen-related cell adhesion molecule pseudogene 7 O - 20121230 -9606 1096 CEACAMP8 - CEACAM29P|CGM15 HGNC:1830 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 8 pseudo CEACAMP8 carcinoembryonic antigen-related cell adhesion molecule pseudogene 8 O - 20121230 -9606 1097 CEACAMP9 - CEACAM30P|CGM16 HGNC:1831 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 9 pseudo CEACAMP9 carcinoembryonic antigen-related cell adhesion molecule pseudogene 9 O - 20121230 -9606 1098 CEACAMP10 - CEACAM31P|CGM17 HGNC:1822 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule pseudogene 10 pseudo CEACAMP10 carcinoembryonic antigen-related cell adhesion molecule pseudogene 10 O - 20121230 -9606 1101 CHAD - SLRR4A HGNC:1909|MIM:602178|Ensembl:ENSG00000136457|HPRD:03711|Vega:OTTHUMG00000162129 17 17q21.33 chondroadherin protein-coding CHAD chondroadherin O cartilage leucine-rich protein|chondroadherin proteoglycan 20121230 -9606 1102 RCBTB2 - CHC1L HGNC:1914|MIM:603524|Ensembl:ENSG00000136161|HPRD:04631|Vega:OTTHUMG00000016902 13 13q14.3 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding RCBTB2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 O CHC1-L|RCC1 and BTB domain-containing protein 2|RCC1-like G exchanging factor RLG|regulator of chromosome condensation and BTB domain containing protein 2|regulator of chromosome condensation and BTB domain-containing protein 2 20121230 -9606 1103 CHAT - CHOACTASE|CMS1A|CMS1A2 HGNC:1912|MIM:118490|Ensembl:ENSG00000070748|HPRD:07510|Vega:OTTHUMG00000018198 10 10q11.2 choline O-acetyltransferase protein-coding CHAT choline O-acetyltransferase O acetyl CoA:choline O-acetyltransferase|choline acetylase 20121230 -9606 1104 RCC1 RP4-669K10.2 CHC1|RCC1-I|SNHG3-RCC1 HGNC:1913|MIM:179710|Ensembl:ENSG00000180198|HPRD:01559|Vega:OTTHUMG00000003645 1 1p36.1 regulator of chromosome condensation 1 protein-coding RCC1 regulator of chromosome condensation 1 O SNHG3-RCC1 readthrough transcript|cell cycle regulatory protein|guanine nucleotide-releasing protein|regulator of chromosome condensation 20121230 -9606 1105 CHD1 - - HGNC:1915|MIM:602118|Ensembl:ENSG00000153922|HPRD:03668|Vega:OTTHUMG00000162744 5 5q15-q21 chromodomain helicase DNA binding protein 1 protein-coding CHD1 chromodomain helicase DNA binding protein 1 O ATP-dependent helicase CHD1|CHD-1|chromodomain-helicase-DNA-binding protein 1 20121230 -9606 1106 CHD2 - - HGNC:1917|MIM:602119|Ensembl:ENSG00000173575|HPRD:03669|Vega:OTTHUMG00000149845 15 15q26 chromodomain helicase DNA binding protein 2 protein-coding CHD2 chromodomain helicase DNA binding protein 2 O ATP-dependent helicase CHD2|CHD-2|chromodomain-helicase-DNA-binding protein 2 20121230 -9606 1107 CHD3 - Mi-2a|Mi2-ALPHA|ZFH HGNC:1918|MIM:602120|Ensembl:ENSG00000170004|HPRD:09071|Vega:OTTHUMG00000150427 17 17p13.1 chromodomain helicase DNA binding protein 3 protein-coding CHD3 chromodomain helicase DNA binding protein 3 O ATP-dependent helicase CHD3|CHD-3|chromodomain-helicase-DNA-binding protein 3|hZFH|mi-2 autoantigen 240 kDa protein|zinc finger helicase|zinc-finger helicase (Snf2-like) 20121230 -9606 1108 CHD4 - Mi-2b|Mi2-BETA HGNC:1919|MIM:603277|Ensembl:ENSG00000111642|HPRD:04472|Vega:OTTHUMG00000169164 12 12p13 chromodomain helicase DNA binding protein 4 protein-coding CHD4 chromodomain helicase DNA binding protein 4 O ATP-dependent helicase CHD4|CHD-4|Mi-2 autoantigen 218 kDa protein|chromodomain-helicase-DNA-binding protein 4 20121230 -9606 1109 AKR1C4 - 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA HGNC:387|MIM:600451|Ensembl:ENSG00000198610|HPRD:07040|Vega:OTTHUMG00000017591 10 10p15.1 aldo-keto reductase family 1, member C4 protein-coding AKR1C4 aldo-keto reductase family 1, member C4 O 3-alpha-HSD1|aldo-keto reductase family 1 member C4|chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4|dihydrodiol dehydrogenase isozyme DD4|type I 3-alpha-hydroxysteroid dehydrogenase 20121230 -9606 1110 CHE2 - - HGNC:1922|MIM:177500 2 2q33-q35 cholinesterase (serum) 2 protein-coding CHE2 cholinesterase (serum) 2 O - 20080828 -9606 1111 CHEK1 - CHK1 HGNC:1925|MIM:603078|Ensembl:ENSG00000149554|HPRD:04356|Vega:OTTHUMG00000165853 11 11q24.2 checkpoint kinase 1 protein-coding CHEK1 checkpoint kinase 1 O CHK1 checkpoint homolog|Checkpoint, S. pombe, homolog of, 1|Chk1-S|cell cycle checkpoint kinase|checkpoint kinase-1|serine/threonine-protein kinase Chk1 20121230 -9606 1112 FOXN3 - C14orf116|CHES1|PRO1635 HGNC:1928|MIM:602628|Ensembl:ENSG00000053254|HPRD:07533|Vega:OTTHUMG00000170898 14 14q31.3 forkhead box N3 protein-coding FOXN3 forkhead box N3 O checkpoint suppressor 1|forkhead box protein N3 20121230 -9606 1113 CHGA - CGA HGNC:1929|MIM:118910|Ensembl:ENSG00000100604|HPRD:07170|Vega:OTTHUMG00000171225 14 14q32 chromogranin A (parathyroid secretory protein 1) protein-coding CHGA chromogranin A (parathyroid secretory protein 1) O SP-I|betagranin (N-terminal fragment of chromogranin A)|chromogranin-A|parathyroid secretory protein 1|pituitary secretory protein I 20121230 -9606 1114 CHGB - SCG1 HGNC:1930|MIM:118920|Ensembl:ENSG00000089199|HPRD:07512|Vega:OTTHUMG00000031821 20 20pter-p12 chromogranin B (secretogranin 1) protein-coding CHGB chromogranin B (secretogranin 1) O cgB|chromogranin-B|secretogranin B|secretogranin I|secretogranin-1|sgI 20121230 -9606 1116 CHI3L1 - ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YKL-40|YKL40|YYL-40|hCGP-39 HGNC:1932|MIM:601525|Ensembl:ENSG00000133048|HPRD:03314|Vega:OTTHUMG00000042122 1 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) protein-coding CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) O 39 kDa synovial protein|cartilage glycoprotein 39|chitinase-3-like protein 1 20121230 -9606 1117 CHI3L2 - YKL-39|YKL39 HGNC:1933|MIM:601526|Ensembl:ENSG00000064886|HPRD:03315|Vega:OTTHUMG00000012174 1 1p13.3 chitinase 3-like 2 protein-coding CHI3L2 chitinase 3-like 2 O chitinase-3-like protein 2|chondrocyte protein 39 20121230 -9606 1118 CHIT1 - CHI3|CHIT|CHITD HGNC:1936|MIM:600031|Ensembl:ENSG00000133063|HPRD:02494|Vega:OTTHUMG00000042126 1 1q31-q32 chitinase 1 (chitotriosidase) protein-coding CHIT1 chitinase 1 (chitotriosidase) O chitotriosidase-1|plasma methylumbelliferyl tetra-N-acetylchitotetraoside hydrolase 20121230 -9606 1119 CHKA - CHK|CK|CKI|EK HGNC:1937|MIM:118491|Ensembl:ENSG00000110721|HPRD:00327|Vega:OTTHUMG00000167424 11 11q13.2 choline kinase alpha protein-coding CHKA choline kinase alpha O CHETK-alpha|ethanolamine kinase 20121230 -9606 1120 CHKB - CHETK|CHKL|CK|CKB|CKEKB|EK|EKB|MDCMC HGNC:1938|MIM:612395|Ensembl:ENSG00000100288|HPRD:07631|Vega:OTTHUMG00000150275 22 22q13.33 choline kinase beta protein-coding CHKB choline kinase beta O choline kinase-like protein|choline/ethanolamine kinase|ethanolamine kinase beta 20121230 -9606 1121 CHM RP1-93L7.1 DXS540|GGTA|HSD-32|REP-1|TCD HGNC:1940|MIM:300390|Ensembl:ENSG00000188419|HPRD:02312|HPRD:06563|Vega:OTTHUMG00000021937 X Xq21.2 choroideremia (Rab escort protein 1) protein-coding CHM choroideremia (Rab escort protein 1) O rab proteins geranylgeranyltransferase component A 1 20121230 -9606 1122 CHML - REP2 HGNC:1941|MIM:118825|Ensembl:ENSG00000203668|HPRD:00341|Vega:OTTHUMG00000039690 1 1q42-qter choroideremia-like (Rab escort protein 2) protein-coding CHML choroideremia-like (Rab escort protein 2) O choroideraemia-like protein|rab proteins geranylgeranyltransferase component A 2 20121230 -9606 1123 CHN1 - ARHGAP2|CHN|DURS2|NC|RHOGAP2 HGNC:1943|MIM:118423|Ensembl:ENSG00000128656|HPRD:00319|Vega:OTTHUMG00000154225 2 2q31.1 chimerin 1 protein-coding CHN1 chimerin 1 O A-chimaerin|N-chimaerin|Rho GTPase-activating protein 2|a2-chimaerin|alpha-chimerin|chimaerin 1|chimerin (chimaerin) 1|n-chimerin 20121230 -9606 1124 CHN2 - ARHGAP3|BCH|CHN2-3|RHOGAP3 HGNC:1944|MIM:602857|Ensembl:ENSG00000106069|HPRD:04173|Vega:OTTHUMG00000023063 7 7p15.3 chimerin 2 protein-coding CHN2 chimerin 2 O beta-chimaerin|beta-chimerin|beta3-chimaerin|chimaerin 2|chimerin (chimaerin) 2|rho-GTPase-activating protein 3 20121230 -9606 1125 CHR - - HGNC:1945|MIM:118840 5 5q35 chromate resistance; sulfate transport unknown CHR chromate resistance; sulfate transport O - 20110215 -9606 1128 CHRM1 - HM1|M1|M1R HGNC:1950|MIM:118510|Ensembl:ENSG00000168539|HPRD:00338|Vega:OTTHUMG00000167765 11 11q13 cholinergic receptor, muscarinic 1 protein-coding CHRM1 cholinergic receptor, muscarinic 1 O acetylcholine receptor, muscarinic 1|muscarinic acetylcholine receptor M1 20121230 -9606 1129 CHRM2 - HM2 HGNC:1951|MIM:118493|Ensembl:ENSG00000181072|HPRD:00328|Vega:OTTHUMG00000155658 7 7q31-q35 cholinergic receptor, muscarinic 2 protein-coding CHRM2 cholinergic receptor, muscarinic 2 O 7TM receptor|acetylcholine receptor, muscarinic 2|muscarinic M2 receptor|muscarinic acetylcholine receptor M2 20121230 -9606 1130 LYST - CHS|CHS1 HGNC:1968|MIM:606897|Ensembl:ENSG00000143669|HPRD:06060|Vega:OTTHUMG00000040527 1 1q42.1-q42.2 lysosomal trafficking regulator protein-coding LYST lysosomal trafficking regulator O Chediak-Higashi syndrome 1|beige homolog|beige protein|lysosomal-trafficking regulator 20121230 -9606 1131 CHRM3 - EGBRS|HM3 HGNC:1952|MIM:118494|Ensembl:ENSG00000133019|HPRD:00329|Vega:OTTHUMG00000039649 1 1q43 cholinergic receptor, muscarinic 3 protein-coding CHRM3 cholinergic receptor, muscarinic 3 O acetylcholine receptor, muscarinic 3|m3 muscarinic receptor|muscarinic acetylcholine receptor M3 20121230 -9606 1132 CHRM4 - HM4|M4R HGNC:1953|MIM:118495|Ensembl:ENSG00000180720|HPRD:00330|Vega:OTTHUMG00000154371 11 11p12-p11.2 cholinergic receptor, muscarinic 4 protein-coding CHRM4 cholinergic receptor, muscarinic 4 O acetylcholine receptor, muscarinic 4|muscarinic acetylcholine receptor M4 20121230 -9606 1133 CHRM5 - HM5 HGNC:1954|MIM:118496|Ensembl:ENSG00000184984|HPRD:00331|Vega:OTTHUMG00000129369 15 15q26 cholinergic receptor, muscarinic 5 protein-coding CHRM5 cholinergic receptor, muscarinic 5 O acetylcholine receptor, muscarinic 5|muscarinic acetylcholine receptor M5 20121230 -9606 1134 CHRNA1 - ACHRA|ACHRD|CHRNA|CMS2A|FCCMS|SCCMS HGNC:1955|MIM:100690|Ensembl:ENSG00000138435|HPRD:00007|Vega:OTTHUMG00000132357 2 2q31.1 cholinergic receptor, nicotinic, alpha 1 (muscle) protein-coding CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle) O acetylcholine receptor subunit alpha|acetylcholine receptor, nicotinic, alpha 1 (muscle)|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)|muscle nicotinic acetylcholine receptor|nicotinic acetylcholine receptor alpha subunit|nicotinic cholinergic receptor alpha 1 20121230 -9606 1135 CHRNA2 - - HGNC:1956|MIM:118502|Ensembl:ENSG00000120903|HPRD:00332|Vega:OTTHUMG00000102083 8 8p21 cholinergic receptor, nicotinic, alpha 2 (neuronal) protein-coding CHRNA2 cholinergic receptor, nicotinic, alpha 2 (neuronal) O acetylcholine receptor, nicotinic, alpha 2 (neuronal)|cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)|neuronal acetylcholine receptor subunit alpha-2 20121230 -9606 1136 CHRNA3 - LNCR2|NACHRA3|PAOD2 HGNC:1957|MIM:118503|Ensembl:ENSG00000080644|HPRD:07511|Vega:OTTHUMG00000143863 15 15q24 cholinergic receptor, nicotinic, alpha 3 (neuronal) protein-coding CHRNA3 cholinergic receptor, nicotinic, alpha 3 (neuronal) O cholinergic receptor, nicotinic, alpha polypeptide 3|neuronal acetylcholine receptor subunit alpha-3|neuronal nicotinic acetylcholine receptor, alpha3 subunit 20121230 -9606 1137 CHRNA4 - BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 HGNC:1958|MIM:118504|Ensembl:ENSG00000101204|HPRD:00333|Vega:OTTHUMG00000033080 20 20q13.2-q13.3 cholinergic receptor, nicotinic, alpha 4 (neuronal) protein-coding CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) O cholinergic receptor, nicotinic, alpha polypeptide 4|neuronal acetylcholine receptor subunit alpha-4|neuronal nicotinic acetylcholine receptor alpha-4 subunit 20121230 -9606 1138 CHRNA5 - LNCR2 HGNC:1959|MIM:118505|Ensembl:ENSG00000169684|HPRD:00334|Vega:OTTHUMG00000143858 15 15q24 cholinergic receptor, nicotinic, alpha 5 (neuronal) protein-coding CHRNA5 cholinergic receptor, nicotinic, alpha 5 (neuronal) O Cholinergic receptor, neuronal nicotinic, alpha polypeptide-5|acetylcholine receptor, nicotinic, alpha 5 (neuronal)|neuronal acetylcholine receptor subunit alpha-5|neuronal nicotinic acetylcholine receptor, alpha5 subunit 20121230 -9606 1139 CHRNA7 - CHRNA7-2|NACHRA7 HGNC:1960|MIM:118511|Ensembl:ENSG00000175344|HPRD:00339|Vega:OTTHUMG00000129285 15 15q14 cholinergic receptor, nicotinic, alpha 7 (neuronal) protein-coding CHRNA7 cholinergic receptor, nicotinic, alpha 7 (neuronal) O a7 nicotinic acetylcholine receptor|acetylcholine receptor, nicotinic, alpha 7 (neuronal)|alpha 7 neuronal nicotinic acetylcholine receptor|alpha-7 nicotinic cholinergic receptor subunit|cholinergic receptor, nicotinic, alpha polypeptide 7|neuronal acetylcholine receptor protein, alpha-7 chain|neuronal acetylcholine receptor subunit alpha-7 20121230 -9606 1140 CHRNB1 - ACHRB|CHRNB|CMS1D|CMS2A|SCCMS HGNC:1961|MIM:100710|Ensembl:ENSG00000170175|HPRD:01156|Vega:OTTHUMG00000108139 17 17p13.1 cholinergic receptor, nicotinic, beta 1 (muscle) protein-coding CHRNB1 cholinergic receptor, nicotinic, beta 1 (muscle) O acetylcholine receptor subunit beta|acetylcholine receptor, nicotinic, beta 1 (muscle)|cholinergic receptor, nicotinic, beta polypeptide 1 (muscle) 20121230 -9606 1141 CHRNB2 RP11-61L14.4 EFNL3|nAChRB2 HGNC:1962|MIM:118507|Ensembl:ENSG00000160716|HPRD:00335|Vega:OTTHUMG00000037262 1 1q21.3 cholinergic receptor, nicotinic, beta 2 (neuronal) protein-coding CHRNB2 cholinergic receptor, nicotinic, beta 2 (neuronal) O acetylcholine receptor, nicotinic, beta 2 (neuronal)|cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)|neuronal acetylcholine receptor subunit beta-2|neuronal nicotinic acetylcholine receptor beta 2 20121230 -9606 1142 CHRNB3 - - HGNC:1963|MIM:118508|Ensembl:ENSG00000147432|HPRD:00336|Vega:OTTHUMG00000165262 8 8p11.2 cholinergic receptor, nicotinic, beta 3 (neuronal) protein-coding CHRNB3 cholinergic receptor, nicotinic, beta 3 (neuronal) O acetylcholine receptor, neuronal nicotinic, beta-3 subunit|acetylcholine receptor, nicotinic, beta 3 (neuronal)|cholinergic receptor, nicotinic, beta polypeptide 3|neuronal acetylcholine receptor subunit beta-3 20121230 -9606 1143 CHRNB4 hCG_1731645 - HGNC:1964|MIM:118509|Ensembl:ENSG00000117971|HPRD:00337|Vega:OTTHUMG00000143860 15 15q24 cholinergic receptor, nicotinic, beta 4 (neuronal) protein-coding CHRNB4 cholinergic receptor, nicotinic, beta 4 (neuronal) O acetylcholine receptor, nicotinic, beta 4 (neuronal)|cholinergic receptor, nicotinic, beta polypeptide 4|neuronal acetylcholine receptor subunit beta-4|neuronal nicotinic receptor beta 4 subunit 20121230 -9606 1144 CHRND - ACHRD|CMS2A|FCCMS|SCCMS HGNC:1965|MIM:100720|Ensembl:ENSG00000135902|HPRD:01516|Vega:OTTHUMG00000133261 2 2q37.1 cholinergic receptor, nicotinic, delta (muscle) protein-coding CHRND cholinergic receptor, nicotinic, delta (muscle) O acetylcholine receptor subunit delta|acetylcholine receptor, nicotinic, delta (muscle)|cholinergic receptor, nicotinic, delta polypeptide 20121230 -9606 1145 CHRNE - ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS HGNC:1966|MIM:100725|Ensembl:ENSG00000108556|HPRD:00008|Vega:OTTHUMG00000090778 17 17p13.2 cholinergic receptor, nicotinic, epsilon (muscle) protein-coding CHRNE cholinergic receptor, nicotinic, epsilon (muscle) O AchR epsilon subunit|acetylcholine receptor subunit epsilon|acetylcholine receptor, nicotinic, epsilon (muscle)|cholinergic receptor, nicotinic, epsilon polypeptide 20121230 -9606 1146 CHRNG - ACHRG HGNC:1967|MIM:100730|Ensembl:ENSG00000196811|HPRD:00009|Vega:OTTHUMG00000153327 2 2q37.1 cholinergic receptor, nicotinic, gamma (muscle) protein-coding CHRNG cholinergic receptor, nicotinic, gamma (muscle) O acetylcholine receptor subunit gamma|acetylcholine receptor, muscle, gamma subunit|acetylcholine receptor, nicotinic, gamma (muscle)|cholinergic receptor, nicotinic, gamma polypeptide 20121230 -9606 1147 CHUK - IKBKA|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16 HGNC:1974|MIM:600664|Ensembl:ENSG00000213341|HPRD:02811|Vega:OTTHUMG00000018899 10 10q24-q25 conserved helix-loop-helix ubiquitous kinase protein-coding CHUK conserved helix-loop-helix ubiquitous kinase O I-kappa-B kinase 1|I-kappa-B kinase-alpha|IKK-a kinase|IkB kinase alpha subunit|Nuclear factor NFkappaB inhibitor kinase alpha|TCF-16|inhibitor of nuclear factor kappa-B kinase subunit alpha|transcription factor 16 20121230 -9606 1149 CIDEA - CIDE-A HGNC:1976|MIM:604440|Ensembl:ENSG00000176194|HPRD:08380|Vega:OTTHUMG00000131691 18 18p11.21|18 cell death-inducing DFFA-like effector a protein-coding CIDEA cell death-inducing DFFA-like effector a O cell death activator CIDE-A 20121230 -9606 1152 CKB - B-CK|CKBB HGNC:1991|MIM:123280|Ensembl:ENSG00000166165|HPRD:00423|Vega:OTTHUMG00000171786 14 14q32 creatine kinase, brain protein-coding CKB creatine kinase, brain O creatine kinase B chain|creatine kinase B-type|creatine kinase-B 20121230 -9606 1153 CIRBP - CIRP HGNC:1982|MIM:602649|Ensembl:ENSG00000099622|HPRD:08375|Vega:OTTHUMG00000180145 19 19p13.3 cold inducible RNA binding protein protein-coding CIRBP cold inducible RNA binding protein O A18 hnRNP|cold inducible RNA-binding protein|cold-inducible RNA-binding protein|glycine-rich RNA binding protein|glycine-rich RNA-binding protein CIRP 20121230 -9606 1154 CISH - BACTS2|CIS|CIS-1|G18|SOCS HGNC:1984|MIM:602441|Ensembl:ENSG00000114737|HPRD:03897|Vega:OTTHUMG00000156853 3 3p21.3 cytokine inducible SH2-containing protein protein-coding CISH cytokine inducible SH2-containing protein O cytokine-inducible SH2-containing protein|cytokine-inducible inhibitor of signaling type 1B|suppressor of cytokine signaling 20121230 -9606 1155 TBCB - CG22|CKAP1|CKAPI HGNC:1989|MIM:601303|Ensembl:ENSG00000105254|HPRD:03196|Vega:OTTHUMG00000048143 19 19q13.11-q13.12 tubulin folding cofactor B protein-coding TBCB tubulin folding cofactor B O cytoskeleton associated protein 1|cytoskeleton-associated protein 1|cytoskeleton-associated protein CKAPI|tubulin-folding cofactor B|tubulin-specific chaperone B 20121230 -9606 1156 CKBE - - HGNC:1992|MIM:123270 14 14q32 creatine kinase, ectopic expression unknown CKBE creatine kinase, ectopic expression O - 20120622 -9606 1157 CKBP1 - - HGNC:1993 16 16q11.2 creatine kinase B pseudogene 1 pseudo CKBP1 creatine kinase B pseudogene 1 O - 20121230 -9606 1158 CKM - CKMM|M-CK HGNC:1994|MIM:123310|Ensembl:ENSG00000104879|HPRD:00426|Vega:OTTHUMG00000181782 19 19q13.32 creatine kinase, muscle protein-coding CKM creatine kinase, muscle O creatine kinase M chain|creatine kinase M-type 20121230 -9606 1159 CKMT1B - CKMT|CKMT1|UMTCK HGNC:1995|MIM:123290|Ensembl:ENSG00000237289|HPRD:00424|Vega:OTTHUMG00000059900 15 15q15 creatine kinase, mitochondrial 1B protein-coding CKMT1B creatine kinase, mitochondrial 1B O U-MtCK|acidic-type mitochondrial creatine kinase|creatine kinase U-type, mitochondrial|creatine kinase, mitochondrial 1 (ubiquitous)|mia-CK|ubiquitous mitochondrial creatine kinase 20121230 -9606 1160 CKMT2 - SMTCK HGNC:1996|MIM:123295|Ensembl:ENSG00000131730|HPRD:00425|Vega:OTTHUMG00000119013 5 5q13.3 creatine kinase, mitochondrial 2 (sarcomeric) protein-coding CKMT2 creatine kinase, mitochondrial 2 (sarcomeric) O S-MtCK|basic-type mitochondrial creatine kinase|creatine kinase S-type, mitochondrial|mib-CK|sarcomeric mitochondrial creatine kinase 20121230 -9606 1161 ERCC8 - CKN1|CSA|UVSS2 HGNC:3439|MIM:609412|Ensembl:ENSG00000049167|HPRD:07523|Vega:OTTHUMG00000097741 5 5q12.1 excision repair cross-complementing rodent repair deficiency, complementation group 8 protein-coding ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 O Cockayne syndrome WD-repeat protein CSA|DNA excision repair protein ERCC-8|cockayne syndrome WD repeat protein CSA 20121230 -9606 1163 CKS1B RP11-307C12.6 CKS1|PNAS-16|PNAS-18|ckshs1 HGNC:19083|MIM:116900|Ensembl:ENSG00000173207|HPRD:00299|Vega:OTTHUMG00000037413 1 1q21.2 CDC28 protein kinase regulatory subunit 1B protein-coding CKS1B CDC28 protein kinase regulatory subunit 1B O CDC2-associated protein CKS1|CDC28 protein kinase 1|CDC28 protein kinase 1B|CKS-1|NB4 apoptosis/differentiation related protein|PNAS-143|cell division control protein CKS1|cyclin-dependent kinases regulatory subunit 1 20121230 -9606 1164 CKS2 RP11-8C21.2 CKSHS2 HGNC:2000|MIM:116901|Ensembl:ENSG00000123975|HPRD:00300|Vega:OTTHUMG00000020180 9 9q22 CDC28 protein kinase regulatory subunit 2 protein-coding CKS2 CDC28 protein kinase regulatory subunit 2 O CDC28 protein kinase 2|CKS-2|CKS1(S. cerevisiae Cdc28/Cdc2 kinase subunit) homolog-2|cyclin-dependent kinases regulatory subunit 2 20121230 -9606 1165 SCAR2 - CLA1|CPD3 HGNC:2002|MIM:213200 9 9q34.3 spinocerebellar ataxia, autosomal recessive 2 unknown SCAR2 spinocerebellar ataxia, autosomal recessive 2 O - 20120622 -9606 1166 SCAX1 - CLA2|OPCA HGNC:2003|MIM:302500 X Xp11.21-q21.3 spinocerebellar ataxia, X-linked 1 unknown SCAX1 spinocerebellar ataxia, X-linked 1 O - 20120622 -9606 1167 CLA3 - CPD1|SCAR6 HGNC:2004|MIM:608029 20 20q11-q13 cerebellar ataxia 3 (cerebellar parenchyma disorder 1) unknown CLA3 cerebellar ataxia 3 (cerebellar parenchyma disorder 1) O - 20120713 -9606 1173 AP2M1 - AP50|CLAPM1|mu2 HGNC:564|MIM:601024|Ensembl:ENSG00000161203|HPRD:03014|Vega:OTTHUMG00000156822 3 3q28 adaptor-related protein complex 2, mu 1 subunit protein-coding AP2M1 adaptor-related protein complex 2, mu 1 subunit O AP-2 complex subunit mu|AP-2 mu 2 chain|AP-2 mu chain|HA2 50 kDA subunit|adapter-related protein complex 2 mu subunit|adaptin-mu2|adaptor protein complex AP-2 subunit mu|clathrin adaptor complex AP2, mu subunit|clathrin assembly protein complex 2 medium chain|clathrin coat adaptor protein AP50|clathrin coat assembly protein AP50|clathrin coat-associated protein AP50|clathrin-associated/assembly/adaptor protein, medium 1|plasma membrane adaptor AP-2 50 kDa protein|plasma membrane adaptor AP-2 50kDA protein 20121230 -9606 1174 AP1S1 - AP19|CLAPS1|SIGMA1A|WUGSC:H_DJ0747G18.2 HGNC:559|MIM:603531|Ensembl:ENSG00000106367|HPRD:04635|Vega:OTTHUMG00000157103 7 7q22.1 adaptor-related protein complex 1, sigma 1 subunit protein-coding AP1S1 adaptor-related protein complex 1, sigma 1 subunit O AP-1 complex subunit sigma-1A|HA1 19 kDa subunit|adapter-related protein complex 1 sigma-1A subunit|adaptor protein complex AP-1 sigma-1A subunit|clathrin assembly protein complex 1 sigma-1A small chain|clathrin coat assembly protein AP19|clathrin-associated/assembly/adaptor protein, small 1 (19kD)|golgi adaptor HA1/AP1 adaptin sigma-1A subunit|sigma 1a subunit of AP-1 clathrin|sigma-adaptin 1A|sigma1A subunit of AP-1 clathrin adaptor complex|sigma1A-adaptin 20121230 -9606 1175 AP2S1 - AP17|AP17-DELTA|CLAPS2 HGNC:565|MIM:602242|Ensembl:ENSG00000042753|HPRD:03762 19 19q13.2-q13.3 adaptor-related protein complex 2, sigma 1 subunit protein-coding AP2S1 adaptor-related protein complex 2, sigma 1 subunit O AP-2 complex subunit sigma|HA2 17 kDa subunit|adapter-related protein complex 2 sigma subunit|adaptor protein complex AP-2 subunit sigma|clathrin assembly protein 2 small chain|clathrin coat assembly protein AP17|clathrin coat-associated protein AP17|clathrin-associated/assembly/adaptor protein, small 2 (17kD)|plasma membrane adaptor AP-2 17 kDa protein|sigma2-adaptin 20121230 -9606 1176 AP3S1 - CLAPS3|Sigma3A HGNC:2013|MIM:601507|Ensembl:ENSG00000177879|HPRD:03298|Vega:OTTHUMG00000128887 5 5q22 adaptor-related protein complex 3, sigma 1 subunit protein-coding AP3S1 adaptor-related protein complex 3, sigma 1 subunit O AP-3 complex sigma-3A subunit|AP-3 complex subunit sigma-1|AP-3 complex subunit sigma-3A|adapter-related protein complex 3 sigma-1 subunit|clathrin-associated/assembly/adapter protein, small 3|clathrin-associated/assembly/adaptor protein, small 3 (22kD)|sigma-3A-adaptin|sigma-adaptin 3a|sigma3A-adaptin 20121230 -9606 1178 CLC - GAL10|Gal-10|LGALS10|LGALS10A|LPPL_HUMAN HGNC:2014|MIM:153310|Ensembl:ENSG00000105205|HPRD:08351 19 19q13.1 Charcot-Leyden crystal protein protein-coding CLC Charcot-Leyden crystal protein O eosinophil lysophospholipase|galectin 10|galectin-10|lysolecithin acylhydrolase 20121230 -9606 1179 CLCA1 - CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 HGNC:2015|MIM:603906|Ensembl:ENSG00000016490|HPRD:04880|Vega:OTTHUMG00000010254 1 1p22.3 chloride channel accessory 1 protein-coding CLCA1 chloride channel accessory 1 O CLCA family member 1, chloride channel regulator|calcium-activated chloride channel family member 1|calcium-activated chloride channel protein 1|calcium-activated chloride channel regulator 1|calcium-dependent chloride channel-1|chloride channel regulator 1|chloride channel, calcium activated, family member 1 20121230 -9606 1180 CLCN1 - CLC1 HGNC:2019|MIM:118425|Ensembl:ENSG00000188037|HPRD:00320|Vega:OTTHUMG00000152695 7 7q35 chloride channel, voltage-sensitive 1 protein-coding CLCN1 chloride channel, voltage-sensitive 1 O chloride channel 1, skeletal muscle|chloride channel protein 1|chloride channel protein, skeletal muscle|clC-1 20121230 -9606 1181 CLCN2 - CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|clC-2 HGNC:2020|MIM:600570|Ensembl:ENSG00000114859|HPRD:02782|Vega:OTTHUMG00000156747 3 3q27-q28 chloride channel, voltage-sensitive 2 protein-coding CLCN2 chloride channel, voltage-sensitive 2 O chloride channel 2|chloride channel protein 2 20121230 -9606 1182 CLCN3 - CLC3|ClC-3 HGNC:2021|MIM:600580|Ensembl:ENSG00000109572|HPRD:02785|Vega:OTTHUMG00000160973 4 4q33 chloride channel, voltage-sensitive 3 protein-coding CLCN3 chloride channel, voltage-sensitive 3 O H(+)/Cl(-) exchange transporter 3|chloride channel 3|chloride channel protein 3|chloride transporter ClC-3 20121230 -9606 1183 CLCN4 - CLC4|ClC-4|ClC-4A HGNC:2022|MIM:302910|Ensembl:ENSG00000073464|HPRD:02362|Vega:OTTHUMG00000021125 X Xp22.3 chloride channel, voltage-sensitive 4 protein-coding CLCN4 chloride channel, voltage-sensitive 4 O H(+)/Cl(-) exchange transporter 4|chloride channel 4|chloride channel protein 4|chloride transporter ClC-4 20121230 -9606 1184 CLCN5 - CLC5|CLCK2|DENTS|NPHL1|NPHL2|XLRH|XRN|clC-5|hCIC-K2|hClC-K2 HGNC:2023|MIM:300008|Ensembl:ENSG00000171365|HPRD:02053|Vega:OTTHUMG00000021514 X Xp11.23-p11.22 chloride channel, voltage-sensitive 5 protein-coding CLCN5 chloride channel, voltage-sensitive 5 O H(+)/Cl(-) exchange transporter 5|chloride channel 5|chloride channel protein 5|chloride transporter ClC-5 20121230 -9606 1185 CLCN6 RP5-934G17.1 CLC-6 HGNC:2024|MIM:602726|Ensembl:ENSG00000011021|HPRD:04102|Vega:OTTHUMG00000002299 1 1p36 chloride channel, voltage-sensitive 6 protein-coding CLCN6 chloride channel, voltage-sensitive 6 O chloride transport protein 6 20121230 -9606 1186 CLCN7 LA16c-390E6.1 CLC-7|CLC7|OPTA2|OPTB4|PPP1R63 HGNC:2025|MIM:602727|Ensembl:ENSG00000103249|HPRD:04103|Vega:OTTHUMG00000044467 16 16p13 chloride channel, voltage-sensitive 7 protein-coding CLCN7 chloride channel, voltage-sensitive 7 O H(+)/Cl(-) exchange transporter 7|chloride channel 7 alpha subunit|chloride channel protein 7|protein phosphatase 1, regulatory subunit 63 20121230 -9606 1187 CLCNKA RP11-5P18.7 CLCK1|ClC-K1|hClC-Ka HGNC:2026|MIM:602024|Ensembl:ENSG00000186510|HPRD:03608|Vega:OTTHUMG00000009529 1 1p36 chloride channel, voltage-sensitive Ka protein-coding CLCNKA chloride channel, voltage-sensitive Ka O chloride channel Ka|chloride channel protein ClC-Ka|chloride channel, kidney, A 20121230 -9606 1188 CLCNKB RP11-5P18.8 CLCKB|ClC-K2|ClC-Kb HGNC:2027|MIM:602023|Ensembl:ENSG00000184908|HPRD:03607|Vega:OTTHUMG00000009530 1 1p36 chloride channel, voltage-sensitive Kb protein-coding CLCNKB chloride channel, voltage-sensitive Kb O chloride channel protein ClC-Kb|chloride channel, kidney, B 20121230 -9606 1191 CLU AAG4 APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 HGNC:2095|MIM:185430|Ensembl:ENSG00000120885|HPRD:01706|Vega:OTTHUMG00000102114 8 8p21-p12 clusterin protein-coding CLU clusterin O aging-associated protein 4|apolipoprotein J|complement cytolysis inhibitor|complement lysis inhibitor|complement-associated protein SP-40,40|ku70-binding protein 1|sulfated glycoprotein 2|testosterone-repressed prostate message 2 20121230 -9606 1192 CLIC1 DADB-110M10.1 G6|NCC27 HGNC:2062|MIM:602872|Ensembl:ENSG00000213719|HPRD:04188|Vega:OTTHUMG00000031103 6 6p21.3 chloride intracellular channel 1 protein-coding CLIC1 chloride intracellular channel 1 O RNCC protein|chloride channel ABP|chloride intracellular channel protein 1|hRNCC|nuclear chloride ion channel 27|nuclear chloride ion channel protein|p64CLCP|regulatory nuclear chloride ion channel protein 20121230 -9606 1193 CLIC2 RP13-228J13.7 CLIC2b|MRXS32|XAP121 HGNC:2063|MIM:300138|Ensembl:ENSG00000155962|HPRD:02139|Vega:OTTHUMG00000022660 X Xq28 chloride intracellular channel 2 protein-coding CLIC2 chloride intracellular channel 2 O chloride intracellular channel protein 2 20121230 -9606 1195 CLK1 - CLK|CLK/STY|STY HGNC:2068|MIM:601951|Ensembl:ENSG00000013441|HPRD:09058|Vega:OTTHUMG00000132784 2 2q33 CDC-like kinase 1 protein-coding CLK1 CDC-like kinase 1 O CDC28/CDC2-like kinase|dual specificity protein kinase CLK1|protein tyrosine kinase STY 20121230 -9606 1196 CLK2 - hCLK2 HGNC:2069|MIM:602989|Ensembl:ENSG00000176444|HPRD:04289|Vega:OTTHUMG00000035873 1 1q21 CDC-like kinase 2 protein-coding CLK2 CDC-like kinase 2 O CLK kinase|dual specificity protein kinase CLK2 20121230 -9606 1197 CLK2P tcag7.1259 - HGNC:2070 7 7p15.3 CDC-like kinase 2, pseudogene pseudo CLK2P CDC-like kinase 2, pseudogene O - 20121230 -9606 1198 CLK3 - PHCLK3|PHCLK3/152 HGNC:2071|MIM:602990|Ensembl:ENSG00000179335|HPRD:04290|Vega:OTTHUMG00000141320 15 15q24 CDC-like kinase 3 protein-coding CLK3 CDC-like kinase 3 O dual specificity protein kinase CLK3 20121230 -9606 1200 TPP1 GIG1 CLN2|LPIC|TPP-1 HGNC:2073|MIM:607998|Ensembl:ENSG00000166340|HPRD:06415|Vega:OTTHUMG00000133404 11 11p15 tripeptidyl peptidase I protein-coding TPP1 tripeptidyl peptidase I O cell growth-inhibiting gene 1 protein|growth-inhibiting protein 1|lysosomal pepstatin insensitive protease|tripeptidyl aminopeptidase|tripeptidyl-peptidase 1 20121230 -9606 1201 CLN3 - BTS|JNCL HGNC:2074|MIM:607042|Ensembl:ENSG00000188603|Ensembl:ENSG00000261832|HPRD:08450|Vega:OTTHUMG00000097024|Vega:OTTHUMG00000175737 16 16p12.1 ceroid-lipofuscinosis, neuronal 3 protein-coding CLN3 ceroid-lipofuscinosis, neuronal 3 O batten disease protein|battenin 20121230 -9606 1203 CLN5 - NCL HGNC:2076|MIM:608102|Ensembl:ENSG00000102805|HPRD:07619|Vega:OTTHUMG00000017100 13 13q21.1-q32 ceroid-lipofuscinosis, neuronal 5 protein-coding CLN5 ceroid-lipofuscinosis, neuronal 5 O ceroid-lipofuscinosis neuronal protein 5 20121230 -9606 1204 CLNS1AP1 - CLNS1B|ICln HGNC:2081 6 6p12-q13 chloride channel, nucleotide-sensitive, 1A pseudogene 1 pseudo CLNS1AP1 chloride channel, nucleotide-sensitive, 1A pseudogene 1 O - 20121230 -9606 1207 CLNS1A - CLCI|CLNS1B|ICln HGNC:2080|MIM:602158|Ensembl:ENSG00000074201|HPRD:03694|Vega:OTTHUMG00000165143 11 11q13.5-q14 chloride channel, nucleotide-sensitive, 1A protein-coding CLNS1A chloride channel, nucleotide-sensitive, 1A O chloride channel regulatory protein|chloride channel, nucleotide sensitive 1A|chloride conductance regulatory protein ICln|chloride ion current inducer protein|i(Cln)|methylosome subunit pICln|reticulocyte pICln|reticulocyte protein ICln 20121230 -9606 1208 CLPS - - HGNC:2085|MIM:120105|Ensembl:ENSG00000137392|HPRD:00356|Vega:OTTHUMG00000014578 6 6p21.31 colipase, pancreatic protein-coding CLPS colipase, pancreatic O colipase|pancreatic colipase preproprotein 20121230 -9606 1209 CLPTM1 - - HGNC:2087|MIM:604783|Ensembl:ENSG00000104853|Vega:OTTHUMG00000180849 19 19q13.3 cleft lip and palate associated transmembrane protein 1 protein-coding CLPTM1 cleft lip and palate associated transmembrane protein 1 O cleft lip and palate transmembrane protein 1 20121230 -9606 1211 CLTA - LCA HGNC:2090|MIM:118960|Ensembl:ENSG00000122705|HPRD:00351|Vega:OTTHUMG00000019896 9 9p13 clathrin, light chain A protein-coding CLTA clathrin, light chain A O clathrin light chain A|clathrin, light polypeptide (Lca) 20121230 -9606 1212 CLTB - LCB HGNC:2091|MIM:118970|Ensembl:ENSG00000175416|HPRD:00352|Vega:OTTHUMG00000130662 5 5q35 clathrin, light chain B protein-coding CLTB clathrin, light chain B O clathrin light chain B|clathrin, light chain (Lcb)|clathrin, light polypeptide (Lcb) 20121230 -9606 1213 CLTC - CHC|CHC17|CLH-17|CLTCL2|Hc HGNC:2092|MIM:118955|Ensembl:ENSG00000141367|HPRD:00350|Vega:OTTHUMG00000134279 17 17q11-qter clathrin, heavy chain (Hc) protein-coding CLTC clathrin, heavy chain (Hc) O clathrin heavy chain 1|clathrin heavy chain on chromosome 17|clathrin, heavy polypeptide (Hc)|clathrin, heavy polypeptide-like 2 20121230 -9606 1215 CMA1 - CYH|MCT1|chymase HGNC:2097|MIM:118938|Ensembl:ENSG00000092009|HPRD:00346|Vega:OTTHUMG00000140181 14 14q11.2 chymase 1, mast cell protein-coding CMA1 chymase 1, mast cell O alpha-chymase|chymase|chymase 1 preproprotein transcript E|chymase 1 preproprotein transcript I|chymase, heart|chymase, mast cell|mast cell protease I 20121230 -9606 1218 CMD1B - CMPD1|FDC HGNC:2102|MIM:600884 9 9q13-q22 cardiomyopathy, dilated 1B (autosomal dominant) unknown CMD1B cardiomyopathy, dilated 1B (autosomal dominant) O - 20120622 -9606 1219 CMD1C - CMPD3 HGNC:2103|MIM:601493 10 10q21-q23 cardiomyopathy, dilated 1C (autosomal dominant) unknown CMD1C cardiomyopathy, dilated 1C (autosomal dominant) O - 20120622 -9606 1222 CMD1F - CDCD3|LGMD1D|LGMD1E HGNC:2106|MIM:602067 6 6q23 cardiomyopathy, dilated 1F (autosomal dominant) unknown CMD1F cardiomyopathy, dilated 1F (autosomal dominant) O - 20120622 -9606 1224 CMD2A - - HGNC:2110 - - cardiomyopathy, dilated 2A (autosomal recessive) unknown CMD2A cardiomyopathy, dilated 2A (autosomal recessive) O - 20110215 -9606 1230 CCR1 - CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 HGNC:1602|MIM:601159|Ensembl:ENSG00000163823|HPRD:03101|Vega:OTTHUMG00000133451 3 3p21 chemokine (C-C motif) receptor 1 protein-coding CCR1 chemokine (C-C motif) receptor 1 O C-C CKR-1|C-C chemokine receptor type 1|CC-CKR-1|CCR-1|LD78 receptor|MIP-1alpha-R|RANTES receptor|RANTES-R|macrophage inflammatory protein 1-alpha receptor 20121230 -9606 1232 CCR3 - CC-CKR-3|CD193|CKR3|CMKBR3 HGNC:1604|MIM:601268|Ensembl:ENSG00000183625|HPRD:03167|Vega:OTTHUMG00000133484 3 3p21.3 chemokine (C-C motif) receptor 3 protein-coding CCR3 chemokine (C-C motif) receptor 3 O C-C CKR-3|C-C chemokine receptor type 3|CC chemokine receptor 3|CCR-3|b-chemokine receptor|eosinophil CC chemokine receptor 3|eosinophil eotaxin receptor 20121230 -9606 1233 CCR4 - CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 HGNC:1605|MIM:604836|Ensembl:ENSG00000183813|HPRD:05324|Vega:OTTHUMG00000130752 3 3p24 chemokine (C-C motif) receptor 4 protein-coding CCR4 chemokine (C-C motif) receptor 4 O C-C CKR-4|C-C chemokine receptor type 4|CCR-4|chemokine (C-C) receptor 4 20121230 -9606 1234 CCR5 - CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22 HGNC:1606|MIM:601373|Ensembl:ENSG00000160791|HPRD:03223 3 3p21.31 chemokine (C-C motif) receptor 5 (gene/pseudogene) protein-coding CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene) O C-C chemokine receptor type 5|C-C motif chemokine receptor 5 A159A|HIV-1 fusion coreceptor|chemokine receptor CCR5|chemr13 20121230 -9606 1235 CCR6 - BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 HGNC:1607|MIM:601835|Ensembl:ENSG00000112486|HPRD:03498|Vega:OTTHUMG00000016015 6 6q27 chemokine (C-C motif) receptor 6 protein-coding CCR6 chemokine (C-C motif) receptor 6 O C-C chemokine receptor type 6|G protein-coupled receptor 29|G-protein coupled receptor 29|LARC receptor|chemokine (C-C) receptor 6|chemokine receptor-like 3|seven-transmembrane receptor, lymphocyte, 22 20121230 -9606 1236 CCR7 - BLR2|CD197|CDw197|CMKBR7|EBI1 HGNC:1608|MIM:600242|Ensembl:ENSG00000126353|HPRD:02588|Vega:OTTHUMG00000133375 17 17q12-q21.2 chemokine (C-C motif) receptor 7 protein-coding CCR7 chemokine (C-C motif) receptor 7 O C-C CKR-7|C-C chemokine receptor type 7|CC chemokine receptor 7|CC-CKR-7|CCR-7|EBV-induced G protein-coupled receptor 1|EBV-induced G-protein coupled receptor 1|Epstein-Barr virus induced G-protein coupled receptor|Epstein-Barr virus induced gene 1|MIP-3 beta receptor|chemokine (C-C) receptor 7|epstein-Barr virus-induced G-protein coupled receptor 1|lymphocyte-specific G protein-coupled peptide receptor 20121230 -9606 1237 CCR8 - CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1 HGNC:1609|MIM:601834|Ensembl:ENSG00000179934|HPRD:03497|Vega:OTTHUMG00000131290 3 3p22 chemokine (C-C motif) receptor 8 protein-coding CCR8 chemokine (C-C motif) receptor 8 O C-C chemokine receptor type 8|CC chemokine receptor 8|CC chemokine receptor CHEMR1|CC-chemokine receptor chemr1|chemokine (C-C) receptor 8|chemokine (C-C) receptor-like 2|chemokine receptor-like 1 20121230 -9606 1238 CCBP2 - CCR10|CCR9|CMKBR9|D6|hD6 HGNC:1565|MIM:602648|Ensembl:ENSG00000144648|HPRD:09095|Vega:OTTHUMG00000133040 3 3p21.3 chemokine binding protein 2 protein-coding CCBP2 chemokine binding protein 2 O C-C chemokine receptor D6|CC-chemokine-binding receptor JAB61|chemokine (C-C motif) receptor 9|chemokine (C-C) receptor 9|chemokine receptor CCR-10|chemokine receptor CCR-9|chemokine receptor D6|chemokine-binding protein 2|chemokine-binding protein D6 20121230 -9606 1240 CMKLR1 - CHEMERINR|ChemR23|DEZ|RVER1 HGNC:2121|MIM:602351|Ensembl:ENSG00000174600|HPRD:03829|Vega:OTTHUMG00000169576 12 12q24.1 chemokine-like receptor 1 protein-coding CMKLR1 chemokine-like receptor 1 O G-protein coupled receptor ChemR23|G-protein coupled receptor DEZ|chemokine receptor-like 1|orphan G-protein coupled receptor, Dez|resolvin E1 receptor 20121230 -9606 1241 LTB4R - BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7 HGNC:6713|MIM:601531|Ensembl:ENSG00000213903|HPRD:03320|Vega:OTTHUMG00000029346 14 14q11.2-q12 leukotriene B4 receptor protein-coding LTB4R leukotriene B4 receptor O G protein-coupled receptor 16|G-protein coupled receptor 16|LTB4-R 1|LTB4-R1|P2Y purinoceptor 7|chemoattractant receptor-like 1|chemokine receptor-like 1|leukotriene B4 receptor 1|purinergic receptor P2Y, G-protein coupled, 7 20121230 -9606 1243 CMM - CMM1|DNS|FAMMM|MLM HGNC:2124|MIM:155600 1 1p36 cutaneous malignant melanoma/dysplastic nevus unknown CMM cutaneous malignant melanoma/dysplastic nevus O - 20120622 -9606 1244 ABCC2 RP11-114F7.2 ABC30|CMOAT|DJS|MRP2|cMRP HGNC:53|MIM:601107|Ensembl:ENSG00000023839|HPRD:03065|Vega:OTTHUMG00000018895 10 10q24 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 protein-coding ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 O ATP-binding cassette sub-family C member 2|canalicular multidrug resistance protein|canalicular multispecific organic anion transporter 1|multidrug resistance-associated protein 2 20121230 -9606 1245 CMR1A - - HGNC:2126 - - cardiomyopathy, restrictive 1A (autosomal dominant) unknown CMR1A cardiomyopathy, restrictive 1A (autosomal dominant) O - 20110215 -9606 1246 CMR2A - - HGNC:2127 - - cardiomyopathy, restrictive 2A (autosomal recessive) unknown CMR2A cardiomyopathy, restrictive 2A (autosomal recessive) O - 20110215 -9606 1247 CMR3A - - HGNC:2128 X Xpter-qter cardiomyopathy, restrictive 3A (X-linked) unknown CMR3A cardiomyopathy, restrictive 3A (X-linked) O - 20110215 -9606 1253 CMTX2 - - HGNC:2137|MIM:302801 X Xp22 Charcot-Marie-Tooth neuropathy, X-linked 2 (recessive) unknown CMTX2 Charcot-Marie-Tooth neuropathy, X-linked 2 (recessive) O - 20120622 -9606 1254 CMTX3 - - HGNC:2138|MIM:302802 X - Charcot-Marie-Tooth neuropathy, X-linked 3 (dominant) unknown CMTX3 Charcot-Marie-Tooth neuropathy, X-linked 3 (dominant) O - 20120622 -9606 1255 CNA1 - - HGNC:2139|MIM:121400 12 12q cornea plana 1 (autosomal dominant) unknown CNA1 cornea plana 1 (autosomal dominant) O - 20110215 -9606 1257 CNC - CNC2 HGNC:2141|MIM:605244 2 2p16 Carney complex, multiple neoplasia and lentiginosis unknown CNC Carney complex, multiple neoplasia and lentiginosis O - 20120622 -9606 1258 CNGB1 - CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|RCNC2|RCNCb|RCNCbeta|RP45 HGNC:2151|MIM:600724|Ensembl:ENSG00000070729|HPRD:07204|Vega:OTTHUMG00000154810 16 16q13 cyclic nucleotide gated channel beta 1 protein-coding CNGB1 cyclic nucleotide gated channel beta 1 O CNG channel beta-1|CNG-4|cyclic nucleotide-gated cation channel 4|cyclic nucleotide-gated cation channel beta-1|cyclic nucleotide-gated cation channel gamma|cyclic nucleotide-gated cation channel modulatory subunit|cyclic nucleotide-gated channel beta-1|glutamic acid-rich protein|glutamic-acid-rich protein 20121230 -9606 1259 CNGA1 - CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 HGNC:2148|MIM:123825|Ensembl:ENSG00000198515|HPRD:00445|Vega:OTTHUMG00000160668 4 4p12 cyclic nucleotide gated channel alpha 1 protein-coding CNGA1 cyclic nucleotide gated channel alpha 1 O CNG channel alpha-1|cGMP-gated cation channel alpha-1|cyclic nucleotide-gated cation channel 1|cyclic nucleotide-gated channel alpha-1|cyclic nucleotide-gated channel, photoreceptor|interleukin-1 homologue|rod photoreceptor cGMP-gated channel subunit alpha 20121230 -9606 1260 CNGA2 - CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa HGNC:2149|MIM:300338|Ensembl:ENSG00000183862|HPRD:08946|Vega:OTTHUMG00000024173 X Xq27 cyclic nucleotide gated channel alpha 2 protein-coding CNGA2 cyclic nucleotide gated channel alpha 2 O CNG channel alpha-2|CNG-2|cyclic nucleotide-gated cation channel 2|cyclic nucleotide-gated channel alpha-2|cyclic nucleotide-gated olfactory channel|cyclic-nucleotide-gated cation channel 2|cyclic-nucleotide-gated olfactory channel 20121230 -9606 1261 CNGA3 - ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 HGNC:2150|MIM:600053|Ensembl:ENSG00000144191|HPRD:02504|Vega:OTTHUMG00000130561 2 2q11.2 cyclic nucleotide gated channel alpha 3 protein-coding CNGA3 cyclic nucleotide gated channel alpha 3 O CNG channel alpha-3|CNG-3|cone photoreceptor cGMP-gated channel alpha subunit|cone photoreceptor cGMP-gated channel subunit alpha|cyclic nucleotide-gated cation channel alpha-3|cyclic nucleotide-gated channel alpha-3 20121230 -9606 1262 CNGA4 - CNCA2|CNG-4|CNG4|CNG5|CNGB2|OCNC2|OCNCBETA|OCNCb HGNC:2152|MIM:609472|Ensembl:ENSG00000132259|HPRD:18724|Vega:OTTHUMG00000165379 11 11p15.4 cyclic nucleotide gated channel alpha 4 protein-coding CNGA4 cyclic nucleotide gated channel alpha 4 O CNG channel alpha-4|cyclic nucleotide gated channel beta 2|cyclic nucleotide-gated cation channel alpha-4 20121230 -9606 1263 PLK3 RP11-269F19.6 CNK|FNK|PRK HGNC:2154|MIM:602913|Ensembl:ENSG00000173846|HPRD:04222|Vega:OTTHUMG00000008491 1 1p34.1 polo-like kinase 3 protein-coding PLK3 polo-like kinase 3 O FGF-inducible kinase|PLK-3|cytokine-inducible kinase|cytokine-inducible serine/threonine-protein kinase|proliferation-related kinase|serine/threonine-protein kinase PLK3 20121230 -9606 1264 CNN1 - SMCC|Sm-Calp HGNC:2155|MIM:600806|Ensembl:ENSG00000130176|HPRD:02884|Vega:OTTHUMG00000182033 19 19p13.2-p13.1 calponin 1, basic, smooth muscle protein-coding CNN1 calponin 1, basic, smooth muscle O basic calponin|calponin H1, smooth muscle|calponin-1|calponins, basic 20121230 -9606 1265 CNN2 - - HGNC:2156|MIM:602373|Ensembl:ENSG00000064666|HPRD:03847|Vega:OTTHUMG00000172729 19 19p13.3 calponin 2 protein-coding CNN2 calponin 2 O calponin H2, smooth muscle|calponin-2|neutral calponin 20121230 -9606 1266 CNN3 - - HGNC:2157|MIM:602374|Ensembl:ENSG00000117519|HPRD:03848|Vega:OTTHUMG00000010783 1 1p22-p21 calponin 3, acidic protein-coding CNN3 calponin 3, acidic O calponin, acidic isoform|calponin-3|dJ639P13.2.2 (acidic calponin 3) 20121230 -9606 1267 CNP - CNP1 HGNC:2158|MIM:123830|Ensembl:ENSG00000173786|HPRD:00448|Vega:OTTHUMG00000133502 17 17q21 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding CNP 2',3'-cyclic nucleotide 3' phosphodiesterase O 2', 3' cyclic nucleotide 3' phosphohydrolase|2',3'-cyclic-nucleotide 3'-phosphodiesterase|CNPase 20121230 -9606 1268 CNR1 RP1-23D17.1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR HGNC:2159|MIM:114610|Ensembl:ENSG00000118432|HPRD:00259|Vega:OTTHUMG00000015184 6 6q14-q15 cannabinoid receptor 1 (brain) protein-coding CNR1 cannabinoid receptor 1 (brain) O cannabinoid receptor 1|central cannabinoid receptor 20121230 -9606 1269 CNR2 RP11-4M23.1 CB-2|CB2|CX5 HGNC:2160|MIM:605051|Ensembl:ENSG00000188822|HPRD:05444|Vega:OTTHUMG00000013892 1 1p36.11 cannabinoid receptor 2 (macrophage) protein-coding CNR2 cannabinoid receptor 2 (macrophage) O cannabinoid receptor 2|testis-dominant CNR2 isoform CB2 20121230 -9606 1270 CNTF - HCNTF HGNC:2169|MIM:118945|Ensembl:ENSG00000242689|HPRD:00347|Vega:OTTHUMG00000137476 11 11q12.2 ciliary neurotrophic factor protein-coding CNTF ciliary neurotrophic factor O - 20121230 -9606 1271 CNTFR RP11-296L22.1 - HGNC:2170|MIM:118946|Ensembl:ENSG00000122756|HPRD:00348|Vega:OTTHUMG00000019821 9 9p13 ciliary neurotrophic factor receptor protein-coding CNTFR ciliary neurotrophic factor receptor O CNTF receptor subunit alpha|CNTFR-alpha|ciliary neurotrophic factor receptor subunit alpha 20121230 -9606 1272 CNTN1 - F3|GP135 HGNC:2171|MIM:600016|Ensembl:ENSG00000018236|HPRD:07189|Vega:OTTHUMG00000169362 12 12q11-q12 contactin 1 protein-coding CNTN1 contactin 1 O contactin-1|glycoprotein gP135|neural cell surface protein F3 20121230 -9606 1275 COD2 - CORDX2 HGNC:2182|MIM:300085 X Xq27 cone dystrophy 2 (X-linked) unknown COD2 cone dystrophy 2 (X-linked) O - 20120622 -9606 1277 COL1A1 - OI4 HGNC:2197|MIM:120150|Ensembl:ENSG00000108821|HPRD:00362|Vega:OTTHUMG00000148674 17 17q21.33 collagen, type I, alpha 1 protein-coding COL1A1 collagen, type I, alpha 1 O alpha-1 type I collagen|collagen alpha 1 chain type I|collagen alpha-1(I) chain|collagen alpha-1(I) chain preproprotein|collagen of skin, tendon and bone, alpha-1 chain|pro-alpha-1 collagen type 1 20121230 -9606 1278 COL1A2 - OI4 HGNC:2198|MIM:120160|Ensembl:ENSG00000164692|HPRD:00363|Vega:OTTHUMG00000148675 7 7q22.1 collagen, type I, alpha 2 protein-coding COL1A2 collagen, type I, alpha 2 O alpha 2(I)-collagen|alpha-2 type I collagen|collagen I, alpha-2 polypeptide|collagen alpha-2(I) chain|collagen of skin, tendon and bone, alpha-2 chain|type I procollagen 20121230 -9606 1279 COL1AR - COLR HGNC:2199|MIM:120340 15 - collagen, type I, alpha, receptor unknown COL1AR collagen, type I, alpha, receptor O - 20080828 -9606 1280 COL2A1 - ANFH|AOM|COL11A3|SEDC HGNC:2200|MIM:120140|Ensembl:ENSG00000139219|HPRD:00361|Vega:OTTHUMG00000149896 12 12q13.11 collagen, type II, alpha 1 protein-coding COL2A1 collagen, type II, alpha 1 O alpha-1 type II collagen|cartilage collagen|chondrocalcin|collagen II, alpha-1 polypeptide|collagen alpha-1(II) chain 20121230 -9606 1281 COL3A1 - EDS4A HGNC:2201|MIM:120180|Ensembl:ENSG00000168542|HPRD:00365|Vega:OTTHUMG00000132648 2 2q31 collagen, type III, alpha 1 protein-coding COL3A1 collagen, type III, alpha 1 O Ehlers-Danlos syndrome type IV, autosomal dominant|alpha1 (III) collagen|collagen alpha-1(III) chain|collagen, fetal 20121230 -9606 1282 COL4A1 RP11-472K17.2 HANAC|POREN1|arresten HGNC:2202|MIM:120130|Ensembl:ENSG00000187498|HPRD:00359|Vega:OTTHUMG00000017342 13 13q34 collagen, type IV, alpha 1 protein-coding COL4A1 collagen, type IV, alpha 1 O COL4A1 NC1 domain|collagen IV, alpha-1 polypeptide|collagen alpha-1(IV) chain|collagen of basement membrane, alpha-1 chain 20121230 -9606 1283 CTD - - HGNC:2497|MIM:300216 - - Coats disease unknown CTD Coats disease O - 20121209 -9606 1284 COL4A2 RP11-90L1.2 ICH|POREN2 HGNC:2203|MIM:120090|Ensembl:ENSG00000134871|HPRD:00355|Vega:OTTHUMG00000017344 13 13q34 collagen, type IV, alpha 2 protein-coding COL4A2 collagen, type IV, alpha 2 O canstatin|collagen alpha-2(IV) chain 20121230 -9606 1285 COL4A3 - - HGNC:2204|MIM:120070|Ensembl:ENSG00000169031|HPRD:00354|Vega:OTTHUMG00000149891 2 2q36-q37 collagen, type IV, alpha 3 (Goodpasture antigen) protein-coding COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) O collagen IV, alpha-3 polypeptide|collagen alpha-3(IV) chain|tumstatin 20121230 -9606 1286 COL4A4 - CA44 HGNC:2206|MIM:120131|Ensembl:ENSG00000081052|HPRD:00360|Vega:OTTHUMG00000149892 2 2q35-q37 collagen, type IV, alpha 4 protein-coding COL4A4 collagen, type IV, alpha 4 O Collagen IV, alpha-4 polypeptide|collagen alpha-4(IV) chain|collagen of basement membrane, alpha-4 chain 20121230 -9606 1287 COL4A5 RP6-24A23.5 ASLN|ATS|CA54 HGNC:2207|MIM:303630|Ensembl:ENSG00000188153|HPRD:02363|Vega:OTTHUMG00000022182 X Xq22 collagen, type IV, alpha 5 protein-coding COL4A5 collagen, type IV, alpha 5 O collagen IV, alpha-5 polypeptide|collagen alpha-5(IV) chain|collagen of basement membrane, alpha-5 chain|dA149D17.3|dA24A23.1 20121230 -9606 1288 COL4A6 RP5-889N15.4 CXDELq22.3|DELXq22.3 HGNC:2208|MIM:303631|Ensembl:ENSG00000197565|HPRD:02364|Vega:OTTHUMG00000022179 X Xq22 collagen, type IV, alpha 6 protein-coding COL4A6 collagen, type IV, alpha 6 O collagen IV, alpha-6 polypeptide|collagen alpha 6 type IV|collagen alpha-6(IV) chain|collagen of basement membrane, alpha-6|dJ889N15.4 (Collagen Alpha 6(IV)) 20121230 -9606 1289 COL5A1 RP11-263F14.1 - HGNC:2209|MIM:120215|Ensembl:ENSG00000130635|HPRD:00368|Vega:OTTHUMG00000020891 9 9q34.2-q34.3 collagen, type V, alpha 1 protein-coding COL5A1 collagen, type V, alpha 1 O alpha 1 type V collagen|collagen alpha-1(V) chain 20121230 -9606 1290 COL5A2 - - HGNC:2210|MIM:120190|Ensembl:ENSG00000204262|HPRD:00366|Vega:OTTHUMG00000149842 2 2q14-q32 collagen, type V, alpha 2 protein-coding COL5A2 collagen, type V, alpha 2 O AB collagen|collagen alpha-2(V) chain|collagen, fetal membrane, A polypeptide|type V preprocollagen alpha 2 chain 20121230 -9606 1291 COL6A1 - OPLL HGNC:2211|MIM:120220|Ensembl:ENSG00000142156|HPRD:00370|Vega:OTTHUMG00000090440 21 21q22.3 collagen, type VI, alpha 1 protein-coding COL6A1 collagen, type VI, alpha 1 O alpha 1 (VI) chain (61 AA)|collagen VI, alpha-1 polypeptide|collagen alpha-1(VI) chain 20121230 -9606 1292 COL6A2 - PP3610 HGNC:2212|MIM:120240|Ensembl:ENSG00000142173|HPRD:02110|Vega:OTTHUMG00000090489 21 21q22.3 collagen, type VI, alpha 2 protein-coding COL6A2 collagen, type VI, alpha 2 O collagen VI, alpha-2 polypeptide|collagen alpha-2(VI) chain|human mRNA for collagen VI alpha-2 C-terminal globular domain 20121230 -9606 1293 COL6A3 - - HGNC:2213|MIM:120250|Ensembl:ENSG00000163359|HPRD:00371|Vega:OTTHUMG00000150020 2 2q37 collagen, type VI, alpha 3 protein-coding COL6A3 collagen, type VI, alpha 3 O collagen VI, alpha-3 polypeptide|collagen alpha-3(VI) chain 20121230 -9606 1294 COL7A1 - EBD1|EBDCT|EBR1 HGNC:2214|MIM:120120|Ensembl:ENSG00000114270|HPRD:00358|Vega:OTTHUMG00000133541 3 3p21.1 collagen, type VII, alpha 1 protein-coding COL7A1 collagen, type VII, alpha 1 O LC collagen|collagen VII, alpha-1 polypeptide|collagen alpha-1(VII) chain|long-chain collagen 20121230 -9606 1295 COL8A1 - C3orf7 HGNC:2215|MIM:120251|Ensembl:ENSG00000144810|HPRD:00372|Vega:OTTHUMG00000148669 3 3q12.3 collagen, type VIII, alpha 1 protein-coding COL8A1 collagen, type VIII, alpha 1 O cell proliferation-inducing protein 41|collagen VIII, alpha-1 polypeptide|collagen alpha-1(VIII) chain|endothelial collagen|smooth muscle cell-expressed and macrophage conditioned medium-induced protein smag-64 20121230 -9606 1296 COL8A2 RP4-665N4.3 FECD|FECD1|PPCD|PPCD2 HGNC:2216|MIM:120252|Ensembl:ENSG00000171812|HPRD:08347|Vega:OTTHUMG00000007665 1 1p34.2 collagen, type VIII, alpha 2 protein-coding COL8A2 collagen, type VIII, alpha 2 O collagen VIII, alpha-2 polypeptide|collagen alpha-2(VIII) chain|dJ665N4.1 (collagen type VIII alpha 2)|endothelial collagen 20121230 -9606 1297 COL9A1 RP1-138F4.2 DJ149L1.1.2|EDM6|MED|STL4 HGNC:2217|MIM:120210|Ensembl:ENSG00000112280|HPRD:00367|Vega:OTTHUMG00000014988 6 6q12-q14 collagen, type IX, alpha 1 protein-coding COL9A1 collagen, type IX, alpha 1 O alpha-1(IX) collagen chain|cartilage-specific short collagen|collagen IX, alpha-1 polypeptide|collagen alpha-1(IX) chain 20121230 -9606 1298 COL9A2 - DJ39G22.4|EDM2|MED|STL5 HGNC:2218|MIM:120260|Ensembl:ENSG00000049089|HPRD:00373|Vega:OTTHUMG00000005761 1 1p33-p32 collagen, type IX, alpha 2 protein-coding COL9A2 collagen, type IX, alpha 2 O alpha 2 type IX collagen|collagen IX, alpha-2 polypeptide|collagen alpha-2(IX) chain 20121230 -9606 1299 COL9A3 RP5-885L7.6 DJ885L7.4.1|EDM3|IDD|MED HGNC:2219|MIM:120270|Ensembl:ENSG00000092758|HPRD:00374|Vega:OTTHUMG00000032938 20 20q13.3 collagen, type IX, alpha 3 protein-coding COL9A3 collagen, type IX, alpha 3 O collagen IX, alpha-3 polypeptide|collagen alpha-3(IX) chain|collagen type IX proteoglycan 20121230 -9606 1300 COL10A1 RP1-136O14.2 - HGNC:2185|MIM:120110|Ensembl:ENSG00000123500|HPRD:00357|Vega:OTTHUMG00000015426 6 6q21-q22 collagen, type X, alpha 1 protein-coding COL10A1 collagen, type X, alpha 1 O Schmid metaphyseal chondrodysplasia|collagen X, alpha-1 polypeptide|collagen alpha-1(X) chain 20121230 -9606 1301 COL11A1 - CO11A1|COLL6|STL2 HGNC:2186|MIM:120280|Ensembl:ENSG00000060718|HPRD:00375|Vega:OTTHUMG00000010872 1 1p21 collagen, type XI, alpha 1 protein-coding COL11A1 collagen, type XI, alpha 1 O collagen XI, alpha-1 polypeptide|collagen alpha-1(XI) chain 20121230 -9606 1302 COL11A2 DADB-100D22.2 DFNA13|DFNB53|FBCG2|HKE5|PARP|STL3 HGNC:2187|MIM:120290|Ensembl:ENSG00000204248|HPRD:00376|HPRD:09049|Vega:OTTHUMG00000031036 6 6p21.3 collagen, type XI, alpha 2 protein-coding COL11A2 collagen, type XI, alpha 2 O collagen alpha-2(XI) chain|pro-a2 chain of collagen type XI 20121230 -9606 1303 COL12A1 RP1-238D15.1 BA209D8.1|COL12A1L|DJ234P15.1 HGNC:2188|MIM:120320|Ensembl:ENSG00000111799|HPRD:00377|HPRD:00378|Vega:OTTHUMG00000015051 6 6q12-q13 collagen, type XII, alpha 1 protein-coding COL12A1 collagen, type XII, alpha 1 O collagen alpha-1(XII) chain|collagen type XII proteoglycan 20121230 -9606 1305 COL13A1 - COLXIIIA1 HGNC:2190|MIM:120350|Ensembl:ENSG00000197467|HPRD:00383|Vega:OTTHUMG00000018394 10 10q22 collagen, type XIII, alpha 1 protein-coding COL13A1 collagen, type XIII, alpha 1 O collagen alpha-1(XIII) chain 20121230 -9606 1306 COL15A1 - - HGNC:2192|MIM:120325|Ensembl:ENSG00000204291|HPRD:00380|Vega:OTTHUMG00000020351 9 9q21-q22 collagen, type XV, alpha 1 protein-coding COL15A1 collagen, type XV, alpha 1 O collagen XV, alpha-1 polypeptide|collagen alpha-1(XV) chain|collagen type XV proteoglycan 20121230 -9606 1307 COL16A1 FP1572 447AA HGNC:2193|MIM:120326|Ensembl:ENSG00000084636|HPRD:00381|Vega:OTTHUMG00000003883 1 1p35-p34 collagen, type XVI, alpha 1 protein-coding COL16A1 collagen, type XVI, alpha 1 O alpha 1 type XVI collagen|collagen XVI, alpha-1 polypeptide|collagen alpha-1(XVI) chain 20121230 -9606 1308 COL17A1 RP11-16H23.2 BA16H23.2|BP180|BPA-2|BPAG2|LAD-1 HGNC:2194|MIM:113811|Ensembl:ENSG00000065618|HPRD:00223|Vega:OTTHUMG00000018998 10 10q24.3 collagen, type XVII, alpha 1 protein-coding COL17A1 collagen, type XVII, alpha 1 O 180 kDa bullous pemphigoid antigen 2|alpha 1 type XVII collagen|bA16H23.2 (collagen, type XVII, alpha 1 (BP180))|bullous pemphigoid antigen 2 (180kD)|collagen XVII, alpha-1 polypeptide|collagen alpha-1(XVII) chain 20121230 -9606 1310 COL19A1 RP1-138F4.1 COL9A1L|D6S228E HGNC:2196|MIM:120165|Ensembl:ENSG00000082293|HPRD:00364|Vega:OTTHUMG00000014987 6 6q12-q13 collagen, type XIX, alpha 1 protein-coding COL19A1 collagen, type XIX, alpha 1 O a1 chain of type XIX collagen|collagen XIX, alpha-1 polypeptide|collagen alpha 1 (Y) chain|collagen alpha-1(XIX) chain|collagen alpha-1(Y) chain 20121230 -9606 1311 COMP - EDM1|EPD1|MED|PSACH|THBS5 HGNC:2227|MIM:600310|Ensembl:ENSG00000105664|HPRD:02632|Vega:OTTHUMG00000169318 19 19p13.1 cartilage oligomeric matrix protein protein-coding COMP cartilage oligomeric matrix protein O TSP5|cartilage oligomeric matrix protein (pseudoachondroplasia, epiphyseal dysplasia 1, multiple)|cartilage oligomeric matrix protein(pseudoachondroplasia, epiphyseal dysplasia 1, multiple)|pseudoachondroplasia (epiphyseal dysplasia 1, multiple)|thrombospondin-5 20121230 -9606 1312 COMT - - HGNC:2228|MIM:116790|Ensembl:ENSG00000093010|HPRD:00284|Vega:OTTHUMG00000150529 22 22q11.21 catechol-O-methyltransferase protein-coding COMT catechol-O-methyltransferase O catechol O-methyltransferase 20121230 -9606 1313 COP - CLTO HGNC:2229 - - clathrin-ordered protein protein-coding COP clathrin-ordered protein O - 20121209 -9606 1314 COPA - HEP-COP HGNC:2230|MIM:601924|Ensembl:ENSG00000122218|HPRD:03564|Vega:OTTHUMG00000033111 1 1q23.2 coatomer protein complex, subunit alpha protein-coding COPA coatomer protein complex, subunit alpha O HEPCOP|alpha coat protein|alpha-COP|alpha-coat protein|coatomer subunit alpha|xenin 20121230 -9606 1315 COPB1 MSTP026 COPB HGNC:2231|MIM:600959|Ensembl:ENSG00000129083|HPRD:02981|Vega:OTTHUMG00000165824 11 11p15.2 coatomer protein complex, subunit beta 1 protein-coding COPB1 coatomer protein complex, subunit beta 1 O beta coat protein|beta-coat protein|beta-cop|coatomer subunit beta 20121230 -9606 1316 KLF6 RP11-184A2.1 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 HGNC:2235|MIM:602053|Ensembl:ENSG00000067082|HPRD:03632|Vega:OTTHUMG00000017567 10 10p15 Kruppel-like factor 6 protein-coding KLF6 Kruppel-like factor 6 O B-cell-derived protein 1|GC-rich binding factor|GC-rich sites-binding factor GBF|Krueppel-like factor 6|Kruppel-like zinc finger protein Zf9|core promoter element binding protein|core promoter element-binding protein|proto-oncogene BCD1|protooncogene B-cell derived 1|suppression of tumorigenicity 12 (prostate)|suppressor of tumorigenicity 12 protein|transcription factor Zf9 20121230 -9606 1317 SLC31A1 RP11-110L1.1 COPT1|CTR1 HGNC:11016|MIM:603085|Ensembl:ENSG00000136868|HPRD:04362|Vega:OTTHUMG00000020519 9 9q32 solute carrier family 31 (copper transporters), member 1 protein-coding SLC31A1 solute carrier family 31 (copper transporters), member 1 O copper transport 1 homolog|copper transporter 1|high affinity copper uptake protein 1|solute carrier family 31 member 1 20121230 -9606 1318 SLC31A2 RP11-9H12.2 COPT2|CTR2|hCTR2 HGNC:11017|MIM:603088|Ensembl:ENSG00000136867|HPRD:04365|Vega:OTTHUMG00000021037 9 9q32 solute carrier family 31 (copper transporters), member 2 protein-coding SLC31A2 solute carrier family 31 (copper transporters), member 2 O copper transporter 2|probable low affinity copper uptake protein 2|solute carrier family 31 member 2 20121230 -9606 1319 CORD1 - CORD|CRD1 HGNC:2245|MIM:600624 18 18q21.1-q21.3 cone rod dystrophy 1 (autosomal dominant) unknown CORD1 cone rod dystrophy 1 (autosomal dominant) O - 20121209 -9606 1321 CORD4 - - HGNC:2247 17 17q cone rod dystrophy 4 unknown CORD4 cone rod dystrophy 4 O - 20110215 -9606 1325 CORT UNQ307/PRO350 CST-14|CST-17|CST-29 HGNC:2257|MIM:602784|Ensembl:ENSG00000241563|HPRD:04150|Vega:OTTHUMG00000001906 1 1p36.22 cortistatin protein-coding CORT cortistatin O cortistatin-14|cortistatin-17|cortistatin-29|preprocortistatin 20121230 -9606 1326 MAP3K8 RP11-449I17.8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT HGNC:6860|MIM:191195|Ensembl:ENSG00000107968|HPRD:01863|Vega:OTTHUMG00000017889 10 10p11.23 mitogen-activated protein kinase kinase kinase 8 protein-coding MAP3K8 mitogen-activated protein kinase kinase kinase 8 O Ewing sarcoma transformant|cot (cancer Osaka thyroid) oncogene|proto-oncogene c-Cot|proto-oncogene serine/threoine protein kinase|tumor progression locus 2 20121230 -9606 1327 COX4I1 - COX4|COX4-1|COXIV HGNC:2265|MIM:123864|Ensembl:ENSG00000131143|HPRD:00466|Vega:OTTHUMG00000137649 16 16q24.1 cytochrome c oxidase subunit IV isoform 1 protein-coding COX4I1 cytochrome c oxidase subunit IV isoform 1 O COX IV-1|cytochrome c oxidase polypeptide IV|cytochrome c oxidase subunit 4 isoform 1, mitochondrial 20121230 -9606 1329 COX5B - COXVB HGNC:2269|MIM:123866|Ensembl:ENSG00000135940|HPRD:00467|Vega:OTTHUMG00000130548 2 2q11.2 cytochrome c oxidase subunit Vb protein-coding COX5B cytochrome c oxidase subunit Vb O cytochrome c oxidase polypeptide VB, mitochondrial|cytochrome c oxidase subunit 5B, mitochondrial 20121230 -9606 1330 COX5BP1 - COX5BL1 HGNC:2270 4 4q21.3 cytochrome c oxidase subunit Vb pseudogene 1 pseudo COX5BP1 cytochrome c oxidase subunit Vb pseudogene 1 O - 20121230 -9606 1331 COX5BP2 - COX5BL2 HGNC:2271 6 6q23.3 cytochrome c oxidase subunit Vb pseudogene 2 pseudo COX5BP2 cytochrome c oxidase subunit Vb pseudogene 2 O - 20121230 -9606 1332 COX5BP3 - COX5BL3 HGNC:2272 7 7q33 cytochrome c oxidase subunit Vb pseudogene 3 pseudo COX5BP3 cytochrome c oxidase subunit Vb pseudogene 3 O - 20121230 -9606 1333 COX5BP4 - COX5BL4 HGNC:2273 11 11q cytochrome c oxidase subunit Vb pseudogene 4 pseudo COX5BP4 cytochrome c oxidase subunit Vb pseudogene 4 O - 20121230 -9606 1335 COX5BP6 - COX5BL6 HGNC:2275 13 13q32.3 cytochrome c oxidase subunit Vb pseudogene 6 pseudo COX5BP6 cytochrome c oxidase subunit Vb pseudogene 6 O - 20121230 -9606 1336 COX5BP7 - COX5BL7 HGNC:2276 22 22q13.1 cytochrome c oxidase subunit Vb pseudogene 7 pseudo COX5BP7 cytochrome c oxidase subunit Vb pseudogene 7 O - 20121230 -9606 1337 COX6A1 - COX6A|COX6AL HGNC:2277|MIM:602072|Ensembl:ENSG00000111775|HPRD:03644|Vega:OTTHUMG00000047791 12 12q24.2|12q24.2 cytochrome c oxidase subunit VIa polypeptide 1 protein-coding COX6A1 cytochrome c oxidase subunit VIa polypeptide 1 O COX VIa-L|cytochrome C oxidase subunit VIa homolog|cytochrome c oxidase polypeptide VIa-liver|cytochrome c oxidase subunit 6A1, mitochondrial|cytochrome c oxidase subunit VIA-liver 20121230 -9606 1338 COX6A1P1 - COX6A1P HGNC:2278 1 1p31.1 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 1 pseudo COX6A1P1 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 1 O - 20121230 -9606 1339 COX6A2 - COX6AH|COXVIAH HGNC:2279|MIM:602009|Ensembl:ENSG00000156885|HPRD:03598|Vega:OTTHUMG00000132463 16 16p11.12 cytochrome c oxidase subunit VIa polypeptide 2 protein-coding COX6A2 cytochrome c oxidase subunit VIa polypeptide 2 O COX VIa-M|cytochrome c oxidase polypeptide VIa-heart|cytochrome c oxidase subunit 6A2, mitochondrial|cytochrome c oxidase subunit VIA-muscle 20121230 -9606 1340 COX6B1 - COX6B|COXG|COXVIb1 HGNC:2280|MIM:124089|Ensembl:ENSG00000126267|HPRD:00493|Vega:OTTHUMG00000048112 19 19q13.1 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) protein-coding COX6B1 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) O COX VIb-1|cytochrome c oxidase subunit 6B1 20121230 -9606 1342 COX6B1P2 - COX6BP-2|COX6BP2 HGNC:2282 17 17q21.32 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 2 pseudo COX6B1P2 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 2 O - 20121230 -9606 1343 COX6B1P3 - COX6BP-3|COX6BP3 HGNC:2283 22 22q13.2 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 3 pseudo COX6B1P3 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 3 O - 20121230 -9606 1345 COX6C - - HGNC:2285|MIM:124090|Ensembl:ENSG00000164919|HPRD:00494|Vega:OTTHUMG00000164703 8 8q22.2 cytochrome c oxidase subunit VIc protein-coding COX6C cytochrome c oxidase subunit VIc O cytochrome c oxidase polypeptide VIc|cytochrome c oxidase subunit 6C|cytochrome c oxidase subunit VIc preprotein 20121230 -9606 1346 COX7A1 - COX7A|COX7AH|COX7AM HGNC:2287|MIM:123995|Ensembl:ENSG00000161281|HPRD:00481|Vega:OTTHUMG00000048144 19 19q13.1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) protein-coding COX7A1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) O cytochrome c oxidase subunit 7A1, mitochondrial|cytochrome c oxidase subunit VIIa heart/muscle isoform|cytochrome c oxidase subunit VIIa-H|cytochrome c oxidase subunit VIIa-M|cytochrome c oxidase subunit VIIa-heart|cytochrome c oxidase subunit VIIa-muscle 20121230 -9606 1347 COX7A2 - COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL HGNC:2288|MIM:123996|Ensembl:ENSG00000112695|HPRD:00482|Vega:OTTHUMG00000015049 6 6q12 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) protein-coding COX7A2 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) O cytochrome c oxidase polypeptide 7A2, mitochondrial|cytochrome c oxidase polypeptide VIIa-liver/heart|cytochrome c oxidase subunit 7A2, mitochondrial|cytochrome c oxidase subunit VIIa-L|cytochrome c oxidase subunit VIIa-liver/heart|cytochrome c oxidase subunit VIIaL|hepatic cytochrome-c oxidase chain VIIa 20121230 -9606 1348 COX7A2P2 - COX7A3|COX7AL|COX7AL2|COX7AP2 HGNC:2290|MIM:123997|HPRD:00483 4 4q22.3 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) pseudogene 2 pseudo COX7A2P2 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) pseudogene 2 O - 20121230 -9606 1349 COX7B - APLCC HGNC:2291|MIM:300885|Ensembl:ENSG00000131174|HPRD:04812|Vega:OTTHUMG00000022718 X Xq21.1 cytochrome c oxidase subunit VIIb protein-coding COX7B cytochrome c oxidase subunit VIIb O cytochrome c oxidase polypeptide VIIb|cytochrome c oxidase subunit 7B, mitochondrial|cytochrome-c oxidase chain VIIb 20121230 -9606 1350 COX7C - - HGNC:2292|MIM:603774|Ensembl:ENSG00000127184|HPRD:04800|Vega:OTTHUMG00000119049 5 5q14 cytochrome c oxidase subunit VIIc protein-coding COX7C cytochrome c oxidase subunit VIIc O cytochrome c oxidase polypeptide VIIc|cytochrome c oxidase subunit 7C, mitochondrial|cytochrome-c oxidase chain VIIc 20121230 -9606 1351 COX8A - COX|COX8|COX8-2|COX8L|VIII|VIII-L HGNC:2294|MIM:123870|Ensembl:ENSG00000176340|HPRD:00468|Vega:OTTHUMG00000167785 11 11q12-q13 cytochrome c oxidase subunit VIIIA (ubiquitous) protein-coding COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) O cytochrome c oxidase polypeptide VIII-liver/heart|cytochrome c oxidase subunit 8-2|cytochrome c oxidase subunit 8A (ubiquitous)|cytochrome c oxidase subunit 8A, mitochondrial|cytochrome c oxidase subunit VIII 20121230 -9606 1352 COX10 - - HGNC:2260|MIM:602125|Ensembl:ENSG00000006695|HPRD:03673|Vega:OTTHUMG00000058814 17 17p12 cytochrome c oxidase assembly homolog 10 (yeast) protein-coding COX10 cytochrome c oxidase assembly homolog 10 (yeast) O COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase|cytochrome c oxidase assembly protein|cytochrome c oxidase subunit X|heme A: farnesyltransferase|heme O synthase|protoheme IX farnesyltransferase, mitochondrial 20121230 -9606 1353 COX11 - COX11P HGNC:2261|MIM:603648|Ensembl:ENSG00000166260|HPRD:04709|Vega:OTTHUMG00000177838 17 17q22 cytochrome c oxidase assembly homolog 11 (yeast) protein-coding COX11 cytochrome c oxidase assembly homolog 11 (yeast) O COX11 cytochrome c oxidase assembly homolog|COX11 homolog, cytochrome c oxidase assembly protein|cytochrome c oxidase assembly protein COX11, mitochondrial|cytochrome c oxidase subunit 11 20121230 -9606 1355 COX15 - - HGNC:2263|MIM:603646|Ensembl:ENSG00000014919|HPRD:04707|Vega:OTTHUMG00000018893 10 10q24 cytochrome c oxidase assembly homolog 15 (yeast) protein-coding COX15 cytochrome c oxidase assembly homolog 15 (yeast) O COX15 homolog, cytochrome c oxidase assembly protein|cytochrome c oxidase assembly protein COX15 homolog|cytochrome c oxidase subunit 15 20121230 -9606 1356 CP - CP-2 HGNC:2295|MIM:117700|Ensembl:ENSG00000047457|HPRD:00317|Vega:OTTHUMG00000159563 3 3q23-q25 ceruloplasmin (ferroxidase) protein-coding CP ceruloplasmin (ferroxidase) O ceruloplasmin 20121230 -9606 1357 CPA1 - CPA HGNC:2296|MIM:114850|Ensembl:ENSG00000091704|HPRD:00269|Vega:OTTHUMG00000157826 7 7q32 carboxypeptidase A1 (pancreatic) protein-coding CPA1 carboxypeptidase A1 (pancreatic) O carboxypeptidase A1|pancreatic carboxypeptidase A 20121230 -9606 1358 CPA2 - - HGNC:2297|MIM:600688|Ensembl:ENSG00000158516|HPRD:02821|Vega:OTTHUMG00000157019 7 7q32 carboxypeptidase A2 (pancreatic) protein-coding CPA2 carboxypeptidase A2 (pancreatic) O carboxypeptidase A2 20121230 -9606 1359 CPA3 - MC-CPA HGNC:2298|MIM:114851|Ensembl:ENSG00000163751|HPRD:00270|Vega:OTTHUMG00000159526 3 3q24 carboxypeptidase A3 (mast cell) protein-coding CPA3 carboxypeptidase A3 (mast cell) O mast cell carboxypeptidase A|tissue carboxypeptidase A 20121230 -9606 1360 CPB1 - CPB|PASP|PCPB HGNC:2299|MIM:114852|Ensembl:ENSG00000153002|HPRD:00271|Vega:OTTHUMG00000159520 3 3q24 carboxypeptidase B1 (tissue) protein-coding CPB1 carboxypeptidase B1 (tissue) O carboxypeptidase B|pancreas-specific protein|pancreatic carboxypeptidase B|procarboxypeptidase B|protaminase|tissue carboxypeptidase B 20121230 -9606 1361 CPB2 - CPU|PCPB|TAFI HGNC:2300|MIM:603101|Ensembl:ENSG00000080618|HPRD:04374|Vega:OTTHUMG00000016867 13 13q14.11 carboxypeptidase B2 (plasma) protein-coding CPB2 carboxypeptidase B2 (plasma) O carboxypeptidase B-like protein|carboxypeptidase B2|carboxypeptidase B2 (plasma, carboxypeptidase U)|carboxypeptidase R|thrombin-activable fibrinolysis inhibitor|thrombin-activatable fibrinolysis inhibitor 20121230 -9606 1362 CPD - GP180 HGNC:2301|MIM:603102|Ensembl:ENSG00000108582|HPRD:04375|Vega:OTTHUMG00000132797 17 17q11.2 carboxypeptidase D protein-coding CPD carboxypeptidase D O metallocarboxypeptidase D 20121230 -9606 1363 CPE - - HGNC:2303|MIM:114855|Ensembl:ENSG00000109472|HPRD:00272|Vega:OTTHUMG00000150252 4 4q32.3 carboxypeptidase E protein-coding CPE carboxypeptidase E O CPH|carboxypeptidase H|cobalt-stimulated chromaffin granule carboxypeptidase|enkephalin convertase|insulin granule-associated carboxypeptidase|prohormone-processing carboxypeptidase 20121230 -9606 1364 CLDN4 - CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R HGNC:2046|MIM:602909|Ensembl:ENSG00000189143|HPRD:04218 7 7q11.23 claudin 4 protein-coding CLDN4 claudin 4 O CPE-receptor|Clostridium perfringens enterotoxin receptor 1|Williams-Beuren syndrome chromosomal region 8 protein|claudin-4 20121230 -9606 1365 CLDN3 - C7orf1|CPE-R2|CPETR2|HRVP1|RVP1 HGNC:2045|MIM:602910|Ensembl:ENSG00000165215|HPRD:04219|Vega:OTTHUMG00000023424 7 7q11.23 claudin 3 protein-coding CLDN3 claudin 3 O CPE-R 2|CPE-receptor 2|Clostridium perfringens enterotoxin receptor 2|claudin-3|ventral prostate.1 protein homolog|ventral prostate.1-like protein 20121230 -9606 1366 CLDN7 - CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1 HGNC:2049|MIM:609131|Ensembl:ENSG00000181885|HPRD:07633|Vega:OTTHUMG00000178005 17 - claudin 7 protein-coding CLDN7 claudin 7 O claudin-7|clostridium perfringens enterotoxin receptor-like 2 20121230 -9606 1368 CPM - - HGNC:2311|MIM:114860|Ensembl:ENSG00000135678|HPRD:00273|Vega:OTTHUMG00000169300 12 12q14.3 carboxypeptidase M protein-coding CPM carboxypeptidase M O renal carboxypeptidase|urinary carboxypeptidase B 20121230 -9606 1369 CPN1 - CPN|SCPN HGNC:2312|MIM:603103|Ensembl:ENSG00000120054|HPRD:09120|Vega:OTTHUMG00000018896 10 10q24.2 carboxypeptidase N, polypeptide 1 protein-coding CPN1 carboxypeptidase N, polypeptide 1 O anaphylatoxin inactivator|arginine carboxypeptidase|carboxypeptidase K|carboxypeptidase N catalytic chain|carboxypeptidase N catalytic subunit|carboxypeptidase N polypeptide 1 50 kD|carboxypeptidase N small subunit|kininase I|kininase-1|lysine carboxypeptidase|plasma carboxypeptidase B|serum carboxypeptidase N 20121230 -9606 1370 CPN2 - ACBP HGNC:2313|MIM:603104|Ensembl:ENSG00000178772|HPRD:11928|Vega:OTTHUMG00000156047 3 3q29 carboxypeptidase N, polypeptide 2 protein-coding CPN2 carboxypeptidase N, polypeptide 2 O arginine carboxypeptidase (carboxypeptidase N)|carboxypeptidase N 83 kDa chain|carboxypeptidase N large subunit|carboxypeptidase N regulatory subunit|carboxypeptidase N subunit 2|carboxypeptidase N, polypeptide 2, 83kD 20121230 -9606 1371 CPOX - CPO|CPX|HCP HGNC:2321|MIM:612732|Ensembl:ENSG00000080819|HPRD:00417|Vega:OTTHUMG00000160016 3 3q12 coproporphyrinogen oxidase protein-coding CPOX coproporphyrinogen oxidase O COX|coprogen oxidase|coproporphyrinogen-III oxidase, mitochondrial|coproporphyrinogenase 20121230 -9606 1373 CPS1 - CPSASE1 HGNC:2323|MIM:608307|Ensembl:ENSG00000021826|HPRD:01995|Vega:OTTHUMG00000132994 2 2q35 carbamoyl-phosphate synthase 1, mitochondrial protein-coding CPS1 carbamoyl-phosphate synthase 1, mitochondrial O carbamoyl-phosphate synthase [ammonia], mitochondrial|carbamoylphosphate synthetase I 20121230 -9606 1374 CPT1A - CPT1|CPT1-L|L-CPT1 HGNC:2328|MIM:600528|Ensembl:ENSG00000110090|HPRD:02755|Vega:OTTHUMG00000167892 11 11q13.2 carnitine palmitoyltransferase 1A (liver) protein-coding CPT1A carnitine palmitoyltransferase 1A (liver) O CPT I|CPTI-L|carnitine O-palmitoyltransferase 1, liver isoform|carnitine O-palmitoyltransferase I, liver isoform|carnitine palmitoyltransferase I, liver 20121230 -9606 1375 CPT1B - CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1 HGNC:2329|MIM:601987|Ensembl:ENSG00000205560|HPRD:09065|Vega:OTTHUMG00000137390 22 22q13.33 carnitine palmitoyltransferase 1B (muscle) protein-coding CPT1B carnitine palmitoyltransferase 1B (muscle) O carnitine O-palmitoyltransferase 1, muscle isoform|carnitine O-palmitoyltransferase I, mitochondrial muscle isoform|carnitine palmitoyltransferase I-like protein 20121230 -9606 1376 CPT2 - CPT1|CPTASE|IIAE4 HGNC:2330|MIM:600650|Ensembl:ENSG00000157184|HPRD:02802|Vega:OTTHUMG00000008942 1 1p32 carnitine palmitoyltransferase 2 protein-coding CPT2 carnitine palmitoyltransferase 2 O CPT II|carnitine O-palmitoyltransferase 2, mitochondrial|carnitine palmitoyltransferase II 20121230 -9606 1378 CR1 RP11-57I17.1 C3BR|C4BR|CD35|KN HGNC:2334|MIM:120620|Ensembl:ENSG00000203710|HPRD:00398|Vega:OTTHUMG00000036311 1 1q32 complement component (3b/4b) receptor 1 (Knops blood group) protein-coding CR1 complement component (3b/4b) receptor 1 (Knops blood group) O C3-binding protein|C3b/C4b receptor|CD35 antigen|Knops blood group antigen|complement component receptor 1|complement receptor type 1 20121230 -9606 1379 CR1L - - HGNC:2335|MIM:605886|Ensembl:ENSG00000197721|Vega:OTTHUMG00000036354 1 1q32.1 complement component (3b/4b) receptor 1-like protein-coding CR1L complement component (3b/4b) receptor 1-like O complement C4b-binding protein CR-1-like protein|complement component receptor 1-like protein 20121230 -9606 1380 CR2 RP11-78B10.1 C3DR|CD21|CR|CVID7|SLEB9 HGNC:2336|MIM:120650|Ensembl:ENSG00000117322|HPRD:00399|Vega:OTTHUMG00000036307 1 1q32 complement component (3d/Epstein Barr virus) receptor 2 protein-coding CR2 complement component (3d/Epstein Barr virus) receptor 2 O EBV receptor|complement C3d receptor|complement receptor type 2|epstein-Barr virus receptor 20121230 -9606 1381 CRABP1 - CRABP|CRABP-I|CRABPI|RBP5 HGNC:2338|MIM:180230|Ensembl:ENSG00000166426|HPRD:07520|Vega:OTTHUMG00000143862 15 15q24 cellular retinoic acid binding protein 1 protein-coding CRABP1 cellular retinoic acid binding protein 1 O cellular retinoic acid-binding protein 1|cellular retinoic acid-binding protein I 20121230 -9606 1382 CRABP2 RP11-66D17.4 CRABP-II|RBP6 HGNC:2339|MIM:180231|Ensembl:ENSG00000143320|HPRD:08353|Vega:OTTHUMG00000041300 1 1q21.3 cellular retinoic acid binding protein 2 protein-coding CRABP2 cellular retinoic acid binding protein 2 O cellular retinoic acid-binding protein 2|cellular retinoic acid-binding protein II 20121230 -9606 1384 CRAT RP11-247A12.5 CAT1 HGNC:2342|MIM:600184|Ensembl:ENSG00000095321|HPRD:08971|Vega:OTTHUMG00000147343 9 9q34.1 carnitine O-acetyltransferase protein-coding CRAT carnitine O-acetyltransferase O CAT|carnitine acetylase|carnitine acetyltransferase 20121230 -9606 1385 CREB1 - CREB HGNC:2345|MIM:123810|Ensembl:ENSG00000118260|HPRD:00442|Vega:OTTHUMG00000132936 2 2q34 cAMP responsive element binding protein 1 protein-coding CREB1 cAMP responsive element binding protein 1 O CREB-1|active transcription factor CREB|cAMP-response element-binding protein-1|cAMP-responsive element-binding protein 1|cyclic AMP-responsive element-binding protein 1|transactivator protein 20121230 -9606 1386 ATF2 - CRE-BP1|CREB2|HB16|TREB7 HGNC:784|MIM:123811|Ensembl:ENSG00000115966|HPRD:00443|Vega:OTTHUMG00000132424 2 2q32 activating transcription factor 2 protein-coding ATF2 activating transcription factor 2 O CREB-2|activating transcription factor 2 splice variant ATF2-var2|cAMP response element-binding protein CRE-BP1|cAMP responsive element binding protein 2, formerly|cAMP-dependent transcription factor ATF-2|cAMP-responsive element-binding protein 2|cyclic AMP-dependent transcription factor ATF-2|cyclic AMP-responsive element-binding protein 2 20121230 -9606 1387 CREBBP - CBP|KAT3A|RSTS HGNC:2348|MIM:600140|Ensembl:ENSG00000005339|HPRD:02534|Vega:OTTHUMG00000129431 16 16p13.3 CREB binding protein protein-coding CREBBP CREB binding protein O CREB-binding protein 20121230 -9606 1388 ATF6B DADB-220I18.4 CREB-RP|CREBL1|G13 HGNC:2349|MIM:600984|Ensembl:ENSG00000213676|HPRD:02992|Vega:OTTHUMG00000031296 6 6p21.3 activating transcription factor 6 beta protein-coding ATF6B activating transcription factor 6 beta O ATF6-beta|Creb-related protein|cAMP response element-binding protein-related protein|cAMP responsive element binding protein-like 1|cAMP-dependent transcription factor ATF-6 beta|cAMP-responsive element-binding protein-like 1|cyclic AMP-dependent transcription factor ATF-6 beta|protein G13 20121230 -9606 1389 CREBL2 - - HGNC:2350|MIM:603476|Ensembl:ENSG00000111269|HPRD:07541|Vega:OTTHUMG00000168704 12 12p13 cAMP responsive element binding protein-like 2 protein-coding CREBL2 cAMP responsive element binding protein-like 2 O MHBs-binding protein 1|cAMP-responsive element-binding protein-like 2 20121230 -9606 1390 CREM RP11-324I22.1 CREM-2|ICER|hCREM-2 HGNC:2352|MIM:123812|Ensembl:ENSG00000095794|HPRD:00444|Vega:OTTHUMG00000017953 10 10p11.21 cAMP responsive element modulator protein-coding CREM cAMP responsive element modulator O CREM 2alpha-b protein|CREM 2beta-a protein|cAMP response element modulator|cAMP-responsive element modulator|inducible cAMP early repressor ICER 20121230 -9606 1391 CRG - - HGNC:2354 - - CHARGE association unknown CRG CHARGE association O - 20080828 -9606 1392 CRH - CRF HGNC:2355|MIM:122560|Ensembl:ENSG00000147571|HPRD:07172|Vega:OTTHUMG00000164474 8 8q13 corticotropin releasing hormone protein-coding CRH corticotropin releasing hormone O corticoliberin|corticotropin-releasing factor 20121230 -9606 1393 CRHBP - CRF-BP|CRFBP HGNC:2356|MIM:122559|Ensembl:ENSG00000145708|HPRD:08348|Vega:OTTHUMG00000102133 5 5q11.2-q13.3 corticotropin releasing hormone binding protein protein-coding CRHBP corticotropin releasing hormone binding protein O CRF-binding protein|CRH-BP|corticotropin releasing hormone-binding protein|corticotropin-releasing factor-binding protein|corticotropin-releasing hormone-binding protein 20121230 -9606 1394 CRHR1 - CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRH-R1h|CRHR|CRHR1L|CRHR1f HGNC:2357|MIM:122561|Ensembl:ENSG00000120088|HPRD:08830|Vega:OTTHUMG00000178271 17 17q12-q22 corticotropin releasing hormone receptor 1 protein-coding CRHR1 corticotropin releasing hormone receptor 1 O corticotropin releasing hormone receptor variant 1e|corticotropin releasing hormone receptor variant 1g|corticotropin-releasing factor receptor 1|corticotropin-releasing factor type 1 receptor|corticotropin-releasing hormone receptor 1|seven transmembrane helix receptor 20121230 -9606 1395 CRHR2 - CRF-RB|CRF2|CRFR2|HM-CRF HGNC:2358|MIM:602034|Ensembl:ENSG00000106113|HPRD:03614|Vega:OTTHUMG00000023218 7 7p14.3 corticotropin releasing hormone receptor 2 protein-coding CRHR2 corticotropin releasing hormone receptor 2 O CRF2 receptor, beta isoform|CRH-R2|corticotropin-releasing factor receptor 2 20121230 -9606 1396 CRIP1 - CRHP|CRIP|CRP-1|CRP1 HGNC:2360|MIM:123875|Ensembl:ENSG00000213145|HPRD:00469|Vega:OTTHUMG00000029908 14 14q32.33 cysteine-rich protein 1 (intestinal) protein-coding CRIP1 cysteine-rich protein 1 (intestinal) O cysteine-rich heart protein|cysteine-rich intestinal protein|cysteine-rich protein 1 20121230 -9606 1397 CRIP2 - CRIP|CRP2|ESP1 HGNC:2361|MIM:601183|Ensembl:ENSG00000182809|HPRD:03113|Vega:OTTHUMG00000029906 14 14q32.3 cysteine-rich protein 2 protein-coding CRIP2 cysteine-rich protein 2 O Cysteine-rich intestinal protein|LIM domain protein ESP1/CRP2 20121230 -9606 1398 CRK - CRKII|p38 HGNC:2362|MIM:164762|Ensembl:ENSG00000167193|HPRD:01267|Vega:OTTHUMG00000090317 17 17p13.3 v-crk sarcoma virus CT10 oncogene homolog (avian) protein-coding CRK v-crk sarcoma virus CT10 oncogene homolog (avian) O adapter molecule crk|proto-oncogene c-Crk 20121230 -9606 1399 CRKL - - HGNC:2363|MIM:602007|Ensembl:ENSG00000099942|HPRD:03596|Vega:OTTHUMG00000150807 22 22q11.21 v-crk sarcoma virus CT10 oncogene homolog (avian)-like protein-coding CRKL v-crk sarcoma virus CT10 oncogene homolog (avian)-like O crk-like protein 20121230 -9606 1400 CRMP1 - CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 HGNC:2365|MIM:602462|Ensembl:ENSG00000072832|HPRD:03913|Vega:OTTHUMG00000125489 4 4p16.1 collapsin response mediator protein 1 protein-coding CRMP1 collapsin response mediator protein 1 O dihydropyrimidinase related protein-1|dihydropyrimidinase-like 1|dihydropyrimidinase-related protein 1|unc-33-like phosphoprotein 3 20121230 -9606 1401 CRP RP11-419N10.4 PTX1 HGNC:2367|MIM:123260|Ensembl:ENSG00000132693|HPRD:00422|Vega:OTTHUMG00000035344 1 1q21-q23 C-reactive protein, pentraxin-related protein-coding CRP C-reactive protein, pentraxin-related O C-reactive protein|pentraxin 1 20121230 -9606 1403 CRS - CRS1|CSO HGNC:2369|MIM:123100 7 7p21 craniosynostosis unknown CRS craniosynostosis O - 20120622 -9606 1404 HAPLN1 - CRTL1 HGNC:2380|MIM:115435|Ensembl:ENSG00000145681|HPRD:00275|Vega:OTTHUMG00000119045 5 5q14.3 hyaluronan and proteoglycan link protein 1 protein-coding HAPLN1 hyaluronan and proteoglycan link protein 1 O Cartilage link protein|cartilage linking protein 1|cartilage-link protein|cartilage-linking protein 1|proteoglycan link protein 20121230 -9606 1406 CRX - CORD2|CRD|LCA7|OTX3 HGNC:2383|MIM:602225|Ensembl:ENSG00000105392|HPRD:03748|Vega:OTTHUMG00000170610 19 19q13.3 cone-rod homeobox protein-coding CRX cone-rod homeobox O cone-rod homeobox protein|orthodenticle homeobox 3 20121230 -9606 1407 CRY1 - PHLL1 HGNC:2384|MIM:601933|Ensembl:ENSG00000008405|HPRD:09050|Vega:OTTHUMG00000170005 12 12q23-q24.1 cryptochrome 1 (photolyase-like) protein-coding CRY1 cryptochrome 1 (photolyase-like) O cryptochrome-1 20121230 -9606 1408 CRY2 - HCRY2|PHLL2 HGNC:2385|MIM:603732|Ensembl:ENSG00000121671|HPRD:07226|Vega:OTTHUMG00000153225 11 11p11.2 cryptochrome 2 (photolyase-like) protein-coding CRY2 cryptochrome 2 (photolyase-like) O cryptochrome-2|growth-inhibiting protein 37 20121230 -9606 1409 CRYAA - CRYA1|HSPB4 HGNC:2388|MIM:123580|Ensembl:ENSG00000160202|HPRD:00427|Vega:OTTHUMG00000086842 21 21q22.3 crystallin, alpha A protein-coding CRYAA crystallin, alpha A O alpha-crystallin A chain|crystallin, alpha-1|heat shock protein beta-4|human alphaA-crystallin (CRYA1) 20121230 -9606 1410 CRYAB - CRYA2|CTPP2|HSPB5 HGNC:2389|MIM:123590|Ensembl:ENSG00000109846|HPRD:00428|Vega:OTTHUMG00000166885 11 11q22.3-q23.1 crystallin, alpha B protein-coding CRYAB crystallin, alpha B O alpha-crystallin B chain|heat shock protein beta-5|heat-shock 20 kD like-protein|renal carcinoma antigen NY-REN-27|rosenthal fiber component 20121230 -9606 1411 CRYBA1 - CRYB1 HGNC:2394|MIM:123610|Ensembl:ENSG00000108255|HPRD:00429|Vega:OTTHUMG00000132729 17 17q11.2 crystallin, beta A1 protein-coding CRYBA1 crystallin, beta A1 O beta-crystallin A3|crystallin, beta A3|eye lens structural protein 20121230 -9606 1412 CRYBA2 - - HGNC:2395|MIM:600836|Ensembl:ENSG00000163499|HPRD:02905|Vega:OTTHUMG00000133084 2 2q34-q36 crystallin, beta A2 protein-coding CRYBA2 crystallin, beta A2 O beta-crystallin A2|eye lens structural protein 20121230 -9606 1413 CRYBA4 CTA-445C9.1 MCOPCT4 HGNC:2396|MIM:123631|Ensembl:ENSG00000196431|HPRD:00432|Vega:OTTHUMG00000150983 22 22q12.1 crystallin, beta A4 protein-coding CRYBA4 crystallin, beta A4 O beta-A4 crystallin|beta-crystallin A4|crystallin, beta polypeptide A4|eye lens structural protein 20121230 -9606 1414 CRYBB1 - CATCN3 HGNC:2397|MIM:600929|Ensembl:ENSG00000100122|HPRD:09021|Vega:OTTHUMG00000150980 22 22q12.1 crystallin, beta B1 protein-coding CRYBB1 crystallin, beta B1 O beta-B1 crystallin|beta-crystallin B1|eye lens structural protein 20121230 -9606 1415 CRYBB2 - CCA2|CRYB2|CRYB2A|D22S665 HGNC:2398|MIM:123620|Ensembl:ENSG00000244752|HPRD:00430|Vega:OTTHUMG00000150905 22 22q11.23 crystallin, beta B2 protein-coding CRYBB2 crystallin, beta B2 O beta-B2 crystallin|beta-crystallin B2|beta-crystallin Bp|eye lens structural protein 20121230 -9606 1416 CRYBB2P1 - CRYB2B HGNC:2399 22 22q11.2-q12.1 crystallin, beta B2 pseudogene 1 pseudo CRYBB2P1 crystallin, beta B2 pseudogene 1 O - 20121230 -9606 1417 CRYBB3 CTA-221G9.6 CATCN2|CRYB3 HGNC:2400|MIM:123630|Ensembl:ENSG00000100053|HPRD:00431|Vega:OTTHUMG00000150869 22 22q11.23 crystallin, beta B3 protein-coding CRYBB3 crystallin, beta B3 O beta-B3 crystallin|beta-crystallin B3|eye lens structural protein 20121230 -9606 1418 CRYGA - CRY-g-A|CRYG1|CRYG5 HGNC:2408|MIM:123660|Ensembl:ENSG00000168582|HPRD:00433|Vega:OTTHUMG00000154796 2 2q33-q35 crystallin, gamma A protein-coding CRYGA crystallin, gamma A O crystallin, gamma 1|gamma-crystallin 5|gamma-crystallin A 20121230 -9606 1419 CRYGB - CRYG2 HGNC:2409|MIM:123670|Ensembl:ENSG00000182187|HPRD:00434|Vega:OTTHUMG00000132941 2 2q33-q35 crystallin, gamma B protein-coding CRYGB crystallin, gamma B O crystallin, gamma 1-2|gamma-crystallin B 20121230 -9606 1420 CRYGC - CCL|CRYG3 HGNC:2410|MIM:123680|Ensembl:ENSG00000163254|HPRD:00435|Vega:OTTHUMG00000132942 2 2q33-q35 crystallin, gamma C protein-coding CRYGC crystallin, gamma C O crystallin, gamma-3|gamma-C-crystallin|gamma-crystallin 2-1|gamma-crystallin 3|gamma-crystallin C 20121230 -9606 1421 CRYGD - CACA|CCA3|CCP|CRYG4|cry-g-D HGNC:2411|MIM:123690|Ensembl:ENSG00000118231|HPRD:00436|Vega:OTTHUMG00000132944 2 2q33-q35 crystallin, gamma D protein-coding CRYGD crystallin, gamma D O gamma crystallin 4|gamma-D-crystallin|gamma-crystallin 4|gamma-crystallin D 20121230 -9606 1423 CRYGFP - CRYG6|CRYGFP1|p1 HGNC:2413 2 2q34 crystallin, gamma F pseudogene pseudo CRYGFP crystallin, gamma F pseudogene O - 20121230 -9606 1424 CRYGGP - CRYGGP1 HGNC:2414 2 2p16.3 crystallin, gamma G, pseudogene pseudo CRYGGP crystallin, gamma G, pseudogene O - 20121230 -9606 1427 CRYGS - CRYG8 HGNC:2417|MIM:123730|Ensembl:ENSG00000213139|HPRD:00439|Vega:OTTHUMG00000156615 3 3q25-qter crystallin, gamma S protein-coding CRYGS crystallin, gamma S O beta-crystallin S|crystallin, gamma 8|gamma-S-crystallin|gamma-crystallin S 20121230 -9606 1428 CRYM - DFNA40|THBP HGNC:2418|MIM:123740|Ensembl:ENSG00000103316|HPRD:08831|Vega:OTTHUMG00000090707 16 16p crystallin, mu protein-coding CRYM crystallin, mu O NADP-regulated thyroid-hormone binding protein|ketimine reductase|mu-crystallin homolog|thiomorpholine-carboxylate dehydrogenase 20121230 -9606 1429 CRYZ - - HGNC:2419|MIM:123691|Ensembl:ENSG00000116791|HPRD:00437|Vega:OTTHUMG00000009620 1 1p31-p22 crystallin, zeta (quinone reductase) protein-coding CRYZ crystallin, zeta (quinone reductase) O NADPH:quinone reductase|quinone oxidoreductase 20121230 -9606 1430 CRYZP1 - - HGNC:2421 7 7q22 crystallin, zeta (quinone reductase) pseudogene 1 pseudo CRYZP1 crystallin, zeta (quinone reductase) pseudogene 1 O - 20121230 -9606 1431 CS - - HGNC:2422|MIM:118950|Ensembl:ENSG00000062485|HPRD:00349|Vega:OTTHUMG00000170344 12 12q13.2 citrate synthase protein-coding CS citrate synthase O citrate synthase, mitochondrial 20121230 -9606 1432 MAPK14 RP1-179N16.5 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA HGNC:6876|MIM:600289|Ensembl:ENSG00000112062|HPRD:02619|Vega:OTTHUMG00000159806 6 6p21.3-p21.2 mitogen-activated protein kinase 14 protein-coding MAPK14 mitogen-activated protein kinase 14 O CSAID-binding protein|Csaids binding protein|MAP kinase 14|MAP kinase Mxi2|MAP kinase p38 alpha|MAX-interacting protein 2|cytokine suppressive anti-inflammatory drug binding protein|cytokine suppressive anti-inflammatory drug-binding protein|mitogen-activated protein kinase p38 alpha|p38 MAP kinase|p38 mitogen activated protein kinase|p38alpha Exip|stress-activated protein kinase 2A 20121230 -9606 1433 CSE - DYT9 HGNC:2430|MIM:601042 1 1p31 choreoathetosis/spasticity, episodic (paroxysmal choreoathetosis/spasticity) unknown CSE choreoathetosis/spasticity, episodic (paroxysmal choreoathetosis/spasticity) O - 20120622 -9606 1434 CSE1L - CAS|CSE1|XPO2 HGNC:2431|MIM:601342|Ensembl:ENSG00000124207|HPRD:03217|Vega:OTTHUMG00000033046 20 20q13 CSE1 chromosome segregation 1-like (yeast) protein-coding CSE1L CSE1 chromosome segregation 1-like (yeast) O cellular apoptosis susceptibility protein|chromosome segregation 1-like protein|exp2|exportin-2|importin-alpha re-exporter 20121230 -9606 1435 CSF1 RP11-195M16.2 CSF-1|MCSF HGNC:2432|MIM:120420|Ensembl:ENSG00000184371|HPRD:00388|Vega:OTTHUMG00000011646 1 1p13.3 colony stimulating factor 1 (macrophage) protein-coding CSF1 colony stimulating factor 1 (macrophage) O lanimostim|macrophage colony-stimulating factor 1 20121230 -9606 1436 CSF1R - C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R HGNC:2433|MIM:164770|Ensembl:ENSG00000182578|HPRD:01269|Vega:OTTHUMG00000130050 5 5q32 colony stimulating factor 1 receptor protein-coding CSF1R colony stimulating factor 1 receptor O CD115 antigen|CSF-1 receptor|FMS proto-oncogene|McDonough feline sarcoma viral (v-fms) oncogene homolog|macrophage colony stimulating factor I receptor|macrophage colony-stimulating factor 1 receptor|proto-oncogene c-Fms 20121230 -9606 1437 CSF2 - GMCSF HGNC:2434|MIM:138960|Ensembl:ENSG00000164400|HPRD:00734|Vega:OTTHUMG00000059637 5 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) protein-coding CSF2 colony stimulating factor 2 (granulocyte-macrophage) O CSF|granulocyte-macrophage colony-stimulating factor|molgramostin|sargramostim 20121230 -9606 1438 CSF2RA - CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMR|SMDP4 HGNC:2435|MIM:306250|MIM:425000|Ensembl:ENSG00000198223|HPRD:02381|Vega:OTTHUMG00000012533 X|Y Xp22.32 and Yp11.3 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein-coding CSF2RA colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) O CD116 antigen|GM-CSF receptor alpha subunit|GMCSFR-alpha|GMR-alpha|colony stimulating factor 2 receptor alpha subunit|granulocyte-macrophage colony-stimulating factor receptor alpha chain|granulocyte-macrophage colony-stimulating factor receptor subunit alpha 20121230 -9606 1439 CSF2RB CITF22-45C1.4 CD131|CDw131|IL3RB|IL5RB|SMDP5 HGNC:2436|MIM:138981|Ensembl:ENSG00000100368|HPRD:00739|Vega:OTTHUMG00000150546 22 22q13.1 colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) protein-coding CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) O GM-CSF/IL-3/IL-5 receptor common beta subunit|GM-CSF/IL-3/IL-5 receptor common beta-chain|colony-stimulating factor-2 receptor, beta, low-affinity|cytokine receptor common subunit beta|interleukin 3 receptor/granulocyte-macrophage colony stimulating factor 3 receptor, beta (high affinity) 20121230 -9606 1440 CSF3 - C17orf33|CSF3OS|GCSF HGNC:2438|MIM:138970|Ensembl:ENSG00000108342|HPRD:00736|Vega:OTTHUMG00000133247 17 17q11.2-q12 colony stimulating factor 3 (granulocyte) protein-coding CSF3 colony stimulating factor 3 (granulocyte) O filgrastim|granulocyte colony-stimulating factor|lenograstim|pluripoietin 20121230 -9606 1441 CSF3R - CD114|GCSFR HGNC:2439|MIM:138971|Ensembl:ENSG00000119535|HPRD:00737|Vega:OTTHUMG00000008010 1 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) protein-coding CSF3R colony stimulating factor 3 receptor (granulocyte) O CD114 antigen|G-CSF receptor|G-CSF-R|granulocyte colony-stimulating factor receptor 20121230 -9606 1442 CSH1 - CS-1|CSA|CSMT|PL|hCS-A HGNC:2440|MIM:150200|Ensembl:ENSG00000136488|HPRD:08350|Vega:OTTHUMG00000171947 17 17q24.2 chorionic somatomammotropin hormone 1 (placental lactogen) protein-coding CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) O choriomammotropin|chorionic somatomammotropin A|chorionic somatomammotropin hormone|placental lactogen 20121230 -9606 1443 CSH2 - CS-2|CSB|hCS-B HGNC:2441|MIM:118820|Ensembl:ENSG00000213218|HPRD:06688|Vega:OTTHUMG00000172283 17 17q24.2 chorionic somatomammotropin hormone 2 protein-coding CSH2 chorionic somatomammotropin hormone 2 O chorionic somatomammotropin B|placental lactogen 20121230 -9606 1444 CSHL1 - CS-5|CSHP1|CSL|hCS-L HGNC:2442|MIM:603515|Ensembl:ENSG00000204414|HPRD:04623|Vega:OTTHUMG00000172287 17 17q24.2 chorionic somatomammotropin hormone-like 1 protein-coding CSHL1 chorionic somatomammotropin hormone-like 1 O chorionic somatomammotropin CS-5|growth hormone cluster 20121230 -9606 1445 CSK - - HGNC:2444|MIM:124095|Ensembl:ENSG00000103653|HPRD:00496|Vega:OTTHUMG00000142814 15 15q24.1 c-src tyrosine kinase protein-coding CSK c-src tyrosine kinase O C-Src kinase|protein-tyrosine kinase CYL|tyrosine-protein kinase CSK 20121230 -9606 1446 CSN1S1 - CASA|CSN1 HGNC:2445|MIM:115450|Ensembl:ENSG00000126545|HPRD:00280|Vega:OTTHUMG00000160843 4 4q21.1 casein alpha s1 protein-coding CSN1S1 casein alpha s1 O alpha-S1-casein|casein, alpha 20121230 -9606 1447 CSN2 - CASB HGNC:2447|MIM:115460|Ensembl:ENSG00000135222|HPRD:00281|Vega:OTTHUMG00000129409 4 4q21.1 casein beta protein-coding CSN2 casein beta O beta-casein 20121230 -9606 1448 CSN3 - CSN10|CSNK|KCA HGNC:2446|MIM:601695|Ensembl:ENSG00000171209|HPRD:03411|Vega:OTTHUMG00000129399 4 4q21.1 casein kappa protein-coding CSN3 casein kappa O kappa-casein 20121230 -9606 1452 CSNK1A1 - CK1|CK1a|CKIa|HLCDGP1|PRO2975 HGNC:2451|MIM:600505|Ensembl:ENSG00000113712|HPRD:02739|Vega:OTTHUMG00000163463 5 5q32 casein kinase 1, alpha 1 protein-coding CSNK1A1 casein kinase 1, alpha 1 O CKI-alpha|casein kinase I isoform alpha|clock regulator kinase|down-regulated in lung cancer 20121230 -9606 1453 CSNK1D - CKIdelta|HCKID HGNC:2452|MIM:600864|Ensembl:ENSG00000141551|HPRD:02920|Vega:OTTHUMG00000178601 17 17q25 casein kinase 1, delta protein-coding CSNK1D casein kinase 1, delta O CKI-delta|CKId|casein kinase I isoform delta|tau-protein kinase CSNK1D 20121230 -9606 1454 CSNK1E RP1-5O6.1 CKIepsilon|HCKIE HGNC:2453|MIM:600863|Ensembl:ENSG00000213923|HPRD:02919|Vega:OTTHUMG00000151135 22 22q13.1 casein kinase 1, epsilon protein-coding CSNK1E casein kinase 1, epsilon O CKI-epsilon|CKIe|casein kinase I isoform epsilon 20121230 -9606 1455 CSNK1G2 - CK1g2 HGNC:2455|MIM:602214|Ensembl:ENSG00000133275|HPRD:03738|Vega:OTTHUMG00000180016 19 19p13.3 casein kinase 1, gamma 2 protein-coding CSNK1G2 casein kinase 1, gamma 2 O CKI-gamma 2|casein kinase 1 isoform gamma-2|casein kinase I isoform gamma-2 20121230 -9606 1456 CSNK1G3 - CKI-gamma 3|CSNK1G3L HGNC:2456|MIM:604253|Ensembl:ENSG00000151292|HPRD:05034|Vega:OTTHUMG00000128923 5 5q23 casein kinase 1, gamma 3 protein-coding CSNK1G3 casein kinase 1, gamma 3 O casein kinase I isoform gamma-3 20121230 -9606 1457 CSNK2A1 - CK2A1|CKII HGNC:2457|MIM:115440|Ensembl:ENSG00000101266|HPRD:00277|Vega:OTTHUMG00000031636 20 20p13 casein kinase 2, alpha 1 polypeptide protein-coding CSNK2A1 casein kinase 2, alpha 1 polypeptide O CK II alpha|CK2 catalytic subunit alpha|casein kinase II alpha 1 subunit|casein kinase II subunit alpha|protein kinase CK2 20121230 -9606 1459 CSNK2A2 - CK2A2|CSNK2A1 HGNC:2459|MIM:115442|Ensembl:ENSG00000070770|HPRD:00279|Vega:OTTHUMG00000133488 16 16q21 casein kinase 2, alpha prime polypeptide protein-coding CSNK2A2 casein kinase 2, alpha prime polypeptide O CK II alpha'|casein kinase II subunit alpha' 20121230 -9606 1460 CSNK2B DADB-127H9.2 CK2B|CK2N|CSK2B|G5A HGNC:2460|MIM:115441|Ensembl:ENSG00000204435|Ensembl:ENSG00000263020|HPRD:00278|Vega:OTTHUMG00000031056|Vega:OTTHUMG00000177888 6 6p21.3 casein kinase 2, beta polypeptide protein-coding CSNK2B casein kinase 2, beta polypeptide O CK II beta|Casein kinase II beta subunit|alternative name: G5a, phosvitin|casein kinase II subunit beta|phosvitin|protein G5a 20121230 -9606 1462 VCAN - CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 HGNC:2464|MIM:118661|Ensembl:ENSG00000038427|HPRD:00340|Vega:OTTHUMG00000131321 5 5q14.3 versican protein-coding VCAN versican O chondroitin sulfate proteoglycan 2|chondroitin sulfate proteoglycan core protein 2|glial hyaluronate-binding protein|large fibroblast proteoglycan|versican core protein|versican proteoglycan 20121230 -9606 1463 NCAN - CSPG3 HGNC:2465|MIM:600826|Ensembl:ENSG00000130287|HPRD:02897|Vega:OTTHUMG00000182218 19 19p12 neurocan protein-coding NCAN neurocan O chondroitin sulfate proteoglycan 3 (neurocan)|neurocan core protein|neurocan proteoglycan 20121230 -9606 1464 CSPG4 - HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 HGNC:2466|MIM:601172|Ensembl:ENSG00000173546|HPRD:03105|Vega:OTTHUMG00000142836 15 15q24.2 chondroitin sulfate proteoglycan 4 protein-coding CSPG4 chondroitin sulfate proteoglycan 4 O chondroitin sulfate proteoglycan 4 (melanoma-associated)|chondroitin sulfate proteoglycan NG2|melanoma chondroitin sulfate proteoglycan|melanoma-associated chondroitin sulfate proteoglycan 20121230 -9606 1465 CSRP1 - CRP|CRP1|CSRP|CYRP|D1S181E HGNC:2469|MIM:123876|Ensembl:ENSG00000159176|HPRD:00470|Vega:OTTHUMG00000035773 1 1q32 cysteine and glycine-rich protein 1 protein-coding CSRP1 cysteine and glycine-rich protein 1 O LIM-domain protein|cysteine-rich protein 1 20121230 -9606 1466 CSRP2 - CRP2|LMO5|SmLIM HGNC:2470|MIM:601871|Ensembl:ENSG00000175183|HPRD:03523|Vega:OTTHUMG00000169919 12 12q21.1 cysteine and glycine-rich protein 2 protein-coding CSRP2 cysteine and glycine-rich protein 2 O LIM domain only 5, smooth muscle|LIM domain only protein 5|LMO-5|cysteine-rich protein 2|smooth muscle cell LIM protein 20121230 -9606 1467 CSRP2P - - HGNC:2471 3 3q13.33 cysteine and glycine-rich protein 2 pseudogene pseudo CSRP2P cysteine and glycine-rich protein 2 pseudogene O - 20121230 -9606 1468 SLC25A10 - DIC HGNC:10980|MIM:606794|Ensembl:ENSG00000183048|Ensembl:ENSG00000262660|HPRD:08424|Vega:OTTHUMG00000178172|Vega:OTTHUMG00000178173 17 17q25.3 solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 protein-coding SLC25A10 solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 O dicarboxylate ion carrier|mitochondrial dicarboxylate carrier 20121230 -9606 1469 CST1 - - HGNC:2473|MIM:123855|Ensembl:ENSG00000170373|HPRD:00460|Vega:OTTHUMG00000032085 20 20p11.21 cystatin SN protein-coding CST1 cystatin SN O cystain-SA-I|cystatin 1|cystatin SA-I|cystatin-1|cystatin-SN|cysteine proteinase inhibitor, type 2 family|salivary cystatin-SA-1 20121230 -9606 1470 CST2 - - HGNC:2474|MIM:123856|Ensembl:ENSG00000170369|HPRD:00461|Vega:OTTHUMG00000032086 20 20p11.21 cystatin SA protein-coding CST2 cystatin SA O cystatin 2|cystatin S5|cystatin-2|cystatin-S5|cystatin-SA|cysteine-proteinase inhibitor|salivary cysteine (thiol) protease inhibitor 20121230 -9606 1471 CST3 - ARMD11 HGNC:2475|MIM:604312|Ensembl:ENSG00000101439|HPRD:05056|Vega:OTTHUMG00000032080 20 20p11.21 cystatin C protein-coding CST3 cystatin C O bA218C14.4 (cystatin C)|cystatin 3|cystatin-3|cystatin-C|gamma-trace|neuroendocrine basic polypeptide|post-gamma-globulin 20121230 -9606 1472 CST4 - - HGNC:2476|MIM:123857|Ensembl:ENSG00000101441|HPRD:00462|Vega:OTTHUMG00000032083 20 20p11.21 cystatin S protein-coding CST4 cystatin S O cystatin 4|cystatin-4|cystatin-S|cystatin-SA-III|salivary acidic protein 1 20121230 -9606 1473 CST5 - - HGNC:2477|MIM:123858|Ensembl:ENSG00000170367|HPRD:00463|Vega:OTTHUMG00000032089 20 20p11.21 cystatin D protein-coding CST5 cystatin D O cystatin 5|cystatin-5|cystatin-D|cysteine-proteinase inhibitor 20121230 -9606 1474 CST6 - - HGNC:2478|MIM:601891|Ensembl:ENSG00000175315|HPRD:03535|Vega:OTTHUMG00000166750 11 11q13 cystatin E/M protein-coding CST6 cystatin E/M O cystatin 6|cystatin M|cystatin M/E|cystatin-6|cystatin-E|cystatin-M|cysteine proteinase inhibitor 20121230 -9606 1475 CSTA - AREI|STF1|STFA HGNC:2481|MIM:184600|Ensembl:ENSG00000121552|HPRD:01697|Vega:OTTHUMG00000159488 3 3q21 cystatin A (stefin A) protein-coding CSTA cystatin A (stefin A) O cystatin AS|cystatin-A 20121230 -9606 1476 CSTB - CST6|EPM1|EPM1A|PME|STFB|ULD HGNC:2482|MIM:601145|Ensembl:ENSG00000160213|HPRD:03091|Vega:OTTHUMG00000086886 21 21q22.3 cystatin B (stefin B) protein-coding CSTB cystatin B (stefin B) O CPI-B|cystatin-B|liver thiol proteinase inhibitor 20121230 -9606 1477 CSTF1 RP5-1167H4.1 CstF-50|CstFp50 HGNC:2483|MIM:600369|Ensembl:ENSG00000101138|HPRD:02653|Vega:OTTHUMG00000032791 20 20q13.2 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa protein-coding CSTF1 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa O CF-1 50 kDa subunit|CSTF 50 kDa subunit|cleavage stimulation factor 50 kDa subunit|cleavage stimulation factor subunit 1 20121230 -9606 1478 CSTF2 RP1-146H21.2 CstF-64 HGNC:2484|MIM:600368|Ensembl:ENSG00000101811|HPRD:02652|Vega:OTTHUMG00000022709 X Xq22.1 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein-coding CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa O CF-1 64 kDa subunit|CSTF 64 kDa subunit|betaCstF-64 variant 2|cleavage stimulation factor 64 kDa subunit|cleavage stimulation factor subunit 2 20121230 -9606 1479 CSTF3 - CSTF-77 HGNC:2485|MIM:600367|Ensembl:ENSG00000176102|HPRD:02651|Vega:OTTHUMG00000166268 11 11p13 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa protein-coding CSTF3 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa O CF-1 77 kDa subunit|CSTF 77 kDa subunit|cleavage stimulation factor 77 kDa subunit|cleavage stimulation factor subunit 3 20121230 -9606 1480 CSTP1 - dJ850N15.1 HGNC:2486 20 20p11 cystatin pseudogene 1 pseudo CSTP1 cystatin pseudogene 1 O - 20121230 -9606 1481 CSTP2 - - HGNC:2487 20 20p11.21 cystatin pseudogene 2 pseudo CSTP2 cystatin pseudogene 2 O - 20121230 -9606 1482 NKX2-5 - CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 HGNC:2488|MIM:600584|Ensembl:ENSG00000183072|HPRD:02787|Vega:OTTHUMG00000130522 5 5q34 NK2 homeobox 5 protein-coding NKX2-5 NK2 homeobox 5 O NK2 transcription factor related, locus 5|cardiac-specific homeobox 1|homeobox protein CSX|homeobox protein NK-2 homolog E|homeobox protein Nkx-2.5|tinman paralog 20121230 -9606 1483 CTAA1 - CAP HGNC:2489|MIM:115650 14 14q24-qter cataract, anterior polar 1 unknown CTAA1 cataract, anterior polar 1 O - 20110215 -9606 1484 CTAA2 - - HGNC:2490|MIM:601202 17 17p13 cataract, anterior polar 2 unknown CTAA2 cataract, anterior polar 2 O - 20120622 -9606 1485 CTAG1B - CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1 HGNC:2491|MIM:300156|Ensembl:ENSG00000184033|HPRD:02151|Vega:OTTHUMG00000024232 X Xq28 cancer/testis antigen 1B protein-coding CTAG1B cancer/testis antigen 1B O New York esophageal squamous cell carcinoma 1|autoimmunogenic cancer/testis antigen NY-ESO-1|cancer antigen 3|cancer/testis antigen 1|cancer/testis antigen 6.1|l antigen family member 2 20121230 -9606 1486 CTBS RP11-118B23.5 CTB HGNC:2496|MIM:600873|Ensembl:ENSG00000117151|HPRD:02927|Vega:OTTHUMG00000009922 1 1p22 chitobiase, di-N-acetyl- protein-coding CTBS chitobiase, di-N-acetyl- O di-N-acetylchitobiase 20121230 -9606 1487 CTBP1 - BARS HGNC:2494|MIM:602618|Ensembl:ENSG00000159692|HPRD:04015|Vega:OTTHUMG00000089259 4 4p16 C-terminal binding protein 1 protein-coding CTBP1 C-terminal binding protein 1 O C-terminal-binding protein 1|brefeldin A-ribosylated substrate 20121230 -9606 1488 CTBP2 RP11-59C5.2 - HGNC:2495|MIM:602619|Ensembl:ENSG00000175029|HPRD:04016|Vega:OTTHUMG00000019224 10 10q26.13 C-terminal binding protein 2 protein-coding CTBP2 C-terminal binding protein 2 O C-terminal-binding protein 2|ribeye 20121230 -9606 1489 CTF1 - CT-1|CT1 HGNC:2499|MIM:600435|Ensembl:ENSG00000150281|HPRD:02699|Vega:OTTHUMG00000132413 16 16p11.2 cardiotrophin 1 protein-coding CTF1 cardiotrophin 1 O cardiophin 1|cardiotrophin-1 20121230 -9606 1490 CTGF - CCN2|HCS24|IGFBP8|NOV2 HGNC:2500|MIM:121009|Ensembl:ENSG00000118523|HPRD:00412|Vega:OTTHUMG00000015573 6 6q23.1 connective tissue growth factor protein-coding CTGF connective tissue growth factor O CCN family member 2|IBP-8|IGF-binding protein 8|IGFBP-8|hypertrophic chondrocyte-specific protein 24|insulin-like growth factor-binding protein 8 20121230 -9606 1491 CTH - - HGNC:2501|MIM:607657|Ensembl:ENSG00000116761|HPRD:09633|Vega:OTTHUMG00000009352 1 1p31.1 cystathionase (cystathionine gamma-lyase) protein-coding CTH cystathionase (cystathionine gamma-lyase) O cystathionine gamma-lyase|cysteine desulfhydrase|cysteine-protein sulfhydrase|gamma-cystathionase|homoserine deaminase|homoserine dehydratase 20121230 -9606 1493 CTLA4 - CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|ICOS|IDDM12 HGNC:2505|MIM:123890|Ensembl:ENSG00000163599|HPRD:00474|Vega:OTTHUMG00000132877 2 2q33 cytotoxic T-lymphocyte-associated protein 4 protein-coding CTLA4 cytotoxic T-lymphocyte-associated protein 4 O CD152 isoform|celiac disease 3|cytotoxic T lymphocyte associated antigen 4 short spliced form|cytotoxic T-lymphocyte antigen 4|cytotoxic T-lymphocyte protein 4|cytotoxic T-lymphocyte-associated antigen 4|cytotoxic T-lymphocyte-associated serine esterase-4|ligand and transmembrane spliced cytotoxic T lymphocyte associated antigen 4 20121230 -9606 1495 CTNNA1 - CAP102 HGNC:2509|MIM:116805|Ensembl:ENSG00000044115|HPRD:00285|Vega:OTTHUMG00000163502 5 5q31.2 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa O alpha E-catenin|alpha-E-catenin|alpha-catenin|alphaE-catenin|cadherin-associated protein,102kDa|catenin alpha-1|renal carcinoma antigen NY-REN-13 20121230 -9606 1496 CTNNA2 - CAP-R|CAPR|CT114|CTNR HGNC:2510|MIM:114025|Ensembl:ENSG00000066032|HPRD:00228|Vega:OTTHUMG00000152903 2 2p12-p11.1 catenin (cadherin-associated protein), alpha 2 protein-coding CTNNA2 catenin (cadherin-associated protein), alpha 2 O alpha N-catenin|alpha-N-catenin|alpha-catenin-related protein|cadherin-associated protein, related|cancer/testis antigen 114|catenin alpha-2 20121230 -9606 1497 CTNS - CTNS-LSB|PQLC4 HGNC:2518|MIM:606272|Ensembl:ENSG00000040531|HPRD:05885|Vega:OTTHUMG00000090693 17 17p13 cystinosin, lysosomal cystine transporter protein-coding CTNS cystinosin, lysosomal cystine transporter O cystinosin 20121230 -9606 1498 CTNNA1P1 - CTNNAP1 HGNC:2513 5 5q22 catenin (cadherin-associated protein), alpha 1 pseudogene 1 pseudo CTNNA1P1 catenin (cadherin-associated protein), alpha 1 pseudogene 1 O - 20121230 -9606 1499 CTNNB1 OK/SW-cl.35 CTNNB HGNC:2514|MIM:116806|Ensembl:ENSG00000168036|HPRD:00286|Vega:OTTHUMG00000131393 3 3p21 catenin (cadherin-associated protein), beta 1, 88kDa protein-coding CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa O catenin beta-1 20121230 -9606 1500 CTNND1 - CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) HGNC:2515|MIM:601045|Ensembl:ENSG00000198561|HPRD:03026|Vega:OTTHUMG00000167272 11 11q11 catenin (cadherin-associated protein), delta 1 protein-coding CTNND1 catenin (cadherin-associated protein), delta 1 O cadherin-associated Src substrate|catenin delta-1|p120 catenin 20121230 -9606 1501 CTNND2 - GT24|NPRAP HGNC:2516|MIM:604275|Ensembl:ENSG00000169862|HPRD:09181|Vega:OTTHUMG00000090511 5 5p15.2 catenin (cadherin-associated protein), delta 2 protein-coding CTNND2 catenin (cadherin-associated protein), delta 2 O T-cell delta-catenin|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)|catenin delta-2|neurojungin 20121230 -9606 1503 CTPS1 - CTPS HGNC:2519|MIM:123860|Ensembl:ENSG00000171793|HPRD:00465|Vega:OTTHUMG00000005712 1 1p34.1 CTP synthase 1 protein-coding CTPS1 CTP synthase 1 O CTP synthetase 1|UTP--ammonia ligase 1|cytidine 5'-triphosphate synthetase|cytidine 5-prime triphosphate synthetase 20121230 -9606 1504 CTRB1 - CTRB HGNC:2521|MIM:118890|Ensembl:ENSG00000168925|HPRD:00345|Vega:OTTHUMG00000159272 16 16q23.1 chymotrypsinogen B1 protein-coding CTRB1 chymotrypsinogen B1 O chymotrypsinogen B 20121230 -9606 1506 CTRL - CTRL1 HGNC:2524|MIM:118888|Ensembl:ENSG00000141086|HPRD:00344|Vega:OTTHUMG00000137552 16 16q22.1 chymotrypsin-like protein-coding CTRL chymotrypsin-like O chymotrypsin-like protease CTRL-1 20121230 -9606 1508 CTSB - APPS|CPSB HGNC:2527|MIM:116810|Ensembl:ENSG00000164733|HPRD:00287|Vega:OTTHUMG00000090799 8 8p22 cathepsin B protein-coding CTSB cathepsin B O APP secretase|amyloid precursor protein secretase|cathepsin B1|cysteine protease 20121230 -9606 1509 CTSD - CLN10|CPSD HGNC:2529|MIM:116840|Ensembl:ENSG00000117984|HPRD:00291|Vega:OTTHUMG00000044760 11 11p15.5 cathepsin D protein-coding CTSD cathepsin D O ceroid-lipofuscinosis, neuronal 10|lysosomal aspartyl peptidase|lysosomal aspartyl protease 20121230 -9606 1510 CTSE - CATE HGNC:2530|MIM:116890|Ensembl:ENSG00000196188|HPRD:00294|Vega:OTTHUMG00000036121 1 1q31 cathepsin E protein-coding CTSE cathepsin E O erythrocyte membrane aspartic proteinase|slow-moving proteinase 20121230 -9606 1511 CTSG - CATG|CG HGNC:2532|MIM:116830|Ensembl:ENSG00000100448|HPRD:00289|Vega:OTTHUMG00000140182 14 14q11.2 cathepsin G protein-coding CTSG cathepsin G O - 20121230 -9606 1512 CTSH - ACC-4|ACC-5|CPSB|minichain HGNC:2535|MIM:116820|Ensembl:ENSG00000103811|HPRD:00288|Vega:OTTHUMG00000144171 15 15q25.1 cathepsin H protein-coding CTSH cathepsin H O N-benzoylarginine-beta-naphthylamide hydrolase|aleurain|cathepsin B3|cathepsin BA|pro-cathepsin H 20121230 -9606 1513 CTSK RP11-363I22.4 CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD HGNC:2536|MIM:601105|Ensembl:ENSG00000143387|HPRD:03064|Vega:OTTHUMG00000035008 1 1q21 cathepsin K protein-coding CTSK cathepsin K O cathepsin O|cathepsin O1|cathepsin O2|cathepsin X 20121230 -9606 1514 CTSL1 RP11-65B23.1 CATL|CTSL|MEP HGNC:2537|MIM:116880|Ensembl:ENSG00000135047|HPRD:00293|Vega:OTTHUMG00000020149 9 9q21.33 cathepsin L1 protein-coding CTSL1 cathepsin L1 O cathepsin L|major excreted protein 20121230 -9606 1515 CTSL2 UNQ268/PRO305 CATL2|CTSU|CTSV HGNC:2538|MIM:603308|Ensembl:ENSG00000136943|HPRD:04495|Vega:OTTHUMG00000020314 9 9q22.2 cathepsin L2 protein-coding CTSL2 cathepsin L2 O cathepsin L2, preproprotein|cathepsin U|cathepsin V 20121230 -9606 1517 CTSL1P2 - CTSLL2 HGNC:2540 10 10q11.22 cathepsin L1 pseudogene 2 pseudo CTSL1P2 cathepsin L1 pseudogene 2 O - 20121230 -9606 1518 CTSL1P8 - - HGNC:39084 9 9q22.1 cathepsin L1 pseudogene 8 pseudo CTSL1P8 cathepsin L1 pseudogene 8 O - 20121230 -9606 1519 CTSO - CTSO1 HGNC:2542|MIM:600550|Ensembl:ENSG00000256043|HPRD:02772|Vega:OTTHUMG00000161942 4 4q32.1 cathepsin O protein-coding CTSO cathepsin O O - 20121230 -9606 1520 CTSS - - HGNC:2545|MIM:116845|Ensembl:ENSG00000163131|HPRD:00292|Vega:OTTHUMG00000035010 1 1q21 cathepsin S protein-coding CTSS cathepsin S O - 20121230 -9606 1521 CTSW - LYPN HGNC:2546|MIM:602364|Ensembl:ENSG00000172543|HPRD:03840|Vega:OTTHUMG00000166663 11 11q13.1 cathepsin W protein-coding CTSW cathepsin W O lymphopain 20121230 -9606 1522 CTSZ - CTSX HGNC:2547|MIM:603169|Ensembl:ENSG00000101160|HPRD:04410|Vega:OTTHUMG00000032858 20 20q13.32 cathepsin Z protein-coding CTSZ cathepsin Z O carboxypeptidase LB|cathepsin B2|cathepsin IV|cathepsin P|cathepsin X|cathepsin Y|cathepsin Z1|cysteine-type carboxypeptidase|lysosomal carboxypeptidase B|preprocathepsin P 20121230 -9606 1523 CUX1 - CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 HGNC:2557|MIM:116896|Ensembl:ENSG00000257923|HPRD:00295|Vega:OTTHUMG00000157129 7 7q22.1 cut-like homeobox 1 protein-coding CUX1 cut-like homeobox 1 O CCAAT displacement protein|cut homolog|golgi integral membrane protein 6|homeobox protein cux-1|protein CASP|putative protein product of Nbla10317 20121230 -9606 1524 CX3CR1 - CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 HGNC:2558|MIM:601470|Ensembl:ENSG00000168329|HPRD:03277|Vega:OTTHUMG00000156249 3 3p21.3 chemokine (C-X3-C motif) receptor 1 protein-coding CX3CR1 chemokine (C-X3-C motif) receptor 1 O C-X3-C CKR-1|CMK-BRL-1|CMK-BRL1|CX3C chemokine receptor 1|G protein-coupled receptor 13|G-protein coupled receptor 13|beta chemokine receptor-like 1|chemokine (C-C) receptor-like 1|chemokine (C-X3-C) receptor 1|fractalkine receptor 20121230 -9606 1525 CXADR - CAR|CAR4/6|HCAR HGNC:2559|MIM:602621|Ensembl:ENSG00000154639|HPRD:11804|Vega:OTTHUMG00000074508 21 21q21.1 coxsackie virus and adenovirus receptor protein-coding CXADR coxsackie virus and adenovirus receptor O 46 kD coxsackievirus and adenovirus receptor (CAR) protein|CVB3-binding protein|HCVADR|coxsackievirus B-adenovirus receptor|coxsackievirus and adenovirus receptor 20121230 -9606 1526 CXB3S - CB3S HGNC:2560|MIM:120050 19 19pter-q13 coxsackie virus B3 sensitivity unknown CXB3S coxsackie virus B3 sensitivity O - 20110215 -9606 1527 TEX28 AC092402.6 CXorf2|TEX28P1|TEX28P2|fTEX HGNC:2563|MIM:300092|Ensembl:ENSG00000185254|HPRD:02103|Vega:OTTHUMG00000022654 X Xq28 testis expressed 28 protein-coding TEX28 testis expressed 28 O testis-specific protein TEX28 20121230 -9606 1528 CYB5A - CYB5|MCB5 HGNC:2570|MIM:613218|Ensembl:ENSG00000166347|HPRD:08941|Vega:OTTHUMG00000132843 18 18q23 cytochrome b5 type A (microsomal) protein-coding CYB5A cytochrome b5 type A (microsomal) O cytochrome b5|type 1 cyt-b5 20121230 -9606 1531 CYB5AP3 - CYB5P3|Psgb-5-1 HGNC:2574 14 14q32.12 cytochrome b5 type A (microsomal) pseudogene 3 pseudo CYB5AP3 cytochrome b5 type A (microsomal) pseudogene 3 O - 20121230 -9606 1532 CYB5AP4 - CYB5P4|Psgb-5-2|bA189G24.1 HGNC:2575 20 20p11.2 cytochrome b5 type A (microsomal) pseudogene 4 pseudo CYB5AP4 cytochrome b5 type A (microsomal) pseudogene 4 O - 20121230 -9606 1534 CYB561 - FRRS2 HGNC:2571|MIM:600019|Ensembl:ENSG00000008283|HPRD:02485|Vega:OTTHUMG00000179116 17 17q23.3 cytochrome b-561 protein-coding CYB561 cytochrome b-561 O cytochrome b561|ferric-chelate reductase 2 20121230 -9606 1535 CYBA - p22-PHOX HGNC:2577|MIM:608508|Ensembl:ENSG00000051523|HPRD:01989|Vega:OTTHUMG00000173320 16 16q24 cytochrome b-245, alpha polypeptide protein-coding CYBA cytochrome b-245, alpha polypeptide O cytochrome b light chain|cytochrome b(558) alpha chain|cytochrome b(558) alpha-subunit|cytochrome b, alpha polypeptide|cytochrome b-245 light chain|cytochrome b558 subunit alpha|flavocytochrome b-558 alpha polypeptide|neutrophil cytochrome b 22 kDa polypeptide|p22 phagocyte B-cytochrome|p22phox|superoxide-generating NADPH oxidase light chain subunit 20121230 -9606 1536 CYBB - AMCBX2|CGD|GP91-1|GP91-PHOX|GP91PHOX|NOX2|p91-PHOX HGNC:2578|MIM:300481|Ensembl:ENSG00000165168|HPRD:02382|Vega:OTTHUMG00000033175 X Xp21.1 cytochrome b-245, beta polypeptide protein-coding CYBB cytochrome b-245, beta polypeptide O CGD91-phox|NADPH oxidase 2|cytochrome b(558) subunit beta|cytochrome b-245 heavy chain|cytochrome b558 subunit beta|heme-binding membrane glycoprotein gp91phox|neutrophil cytochrome b 91 kDa polypeptide|p22 phagocyte B-cytochrome|superoxide-generating NADPH oxidase heavy chain subunit 20121230 -9606 1537 CYC1 - UQCR4 HGNC:2579|MIM:123980|Ensembl:ENSG00000179091|HPRD:00480|Vega:OTTHUMG00000165242 8 8q24.3 cytochrome c-1 protein-coding CYC1 cytochrome c-1 O complex III subunit 4|complex III subunit IV|cytochrome b-c1 complex subunit 4|cytochrome c1, heme protein, mitochondrial|ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit 20121230 -9606 1538 CYLC1 RP11-305I2.1 CYCL1 HGNC:2582|MIM:300768|Ensembl:ENSG00000183035|Vega:OTTHUMG00000021922 X Xq21.1 cylicin, basic protein of sperm head cytoskeleton 1 protein-coding CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 O cylicin I|cylicin-1|multiple-band polypeptide I 20121230 -9606 1539 CYLC2 - - HGNC:2583|MIM:604035|Ensembl:ENSG00000155833|HPRD:04945|Vega:OTTHUMG00000020396 9 9q31.1 cylicin, basic protein of sperm head cytoskeleton 2 protein-coding CYLC2 cylicin, basic protein of sperm head cytoskeleton 2 O cylicin II|cylicin-2|multiple-band polypeptide II 20121230 -9606 1540 CYLD HSPC057 BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 HGNC:2584|MIM:605018|Ensembl:ENSG00000083799|HPRD:05427|Vega:OTTHUMG00000173404 16 16q12.1 cylindromatosis (turban tumor syndrome) protein-coding CYLD cylindromatosis (turban tumor syndrome) O deubiquitinating enzyme CYLD|probable ubiquitin carboxyl-terminal hydrolase CYLD|ubiquitin carboxyl-terminal hydrolase CYLD|ubiquitin specific peptidase like 2|ubiquitin thioesterase CYLD|ubiquitin thiolesterase CYLD|ubiquitin-specific-processing protease CYLD 20121230 -9606 1541 CYMD - DCMD|MDDC HGNC:2587|MIM:153880 7 7p21-p15 cystoid macular dystrophy unknown CYMD cystoid macular dystrophy O - 20120622 -9606 1543 CYP1A1 - AHH|AHRR|CP11|CYP1|P1-450|P450-C|P450DX HGNC:2595|MIM:108330|Ensembl:ENSG00000140465|HPRD:00148|Vega:OTTHUMG00000142812 15 15q24.1 cytochrome P450, family 1, subfamily A, polypeptide 1 protein-coding CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1 O CYPIA1|aryl hydrocarbon hydroxylase|cytochrome P1-450, dioxin-inducible|cytochrome P450 1A1|cytochrome P450 form 6|cytochrome P450, subfamily I (aromatic compound-inducible), polypeptide 1|cytochrome P450-C|cytochrome P450-P1|flavoprotein-linked monooxygenase|xenobiotic monooxygenase 20121230 -9606 1544 CYP1A2 - CP12|P3-450|P450(PA) HGNC:2596|MIM:124060|Ensembl:ENSG00000140505|HPRD:00489|Vega:OTTHUMG00000172901 15 15q24.1 cytochrome P450, family 1, subfamily A, polypeptide 2 protein-coding CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2 O CYPIA2|P450 form 4|aryl hydrocarbon hydroxylase|cytochrome P(3)450|cytochrome P450 1A2|cytochrome P450 4|cytochrome P450, subfamily I (aromatic compound-inducible), polypeptide 2|cytochrome P450-P3|dioxin-inducible P3-450|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1545 CYP1B1 - CP1B|CYPIB1|GLC3A|P4501B1 HGNC:2597|MIM:601771|Ensembl:ENSG00000138061|HPRD:03464|Vega:OTTHUMG00000100970 2 2p22.2 cytochrome P450, family 1, subfamily B, polypeptide 1 protein-coding CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 O aryl hydrocarbon hydroxylase|cytochrome P450 1B1|cytochrome P450, subfamily I (dioxin-inducible), polypeptide 1 (glaucoma 3, primary infantile)|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1546 CYP2A - CYP1|CYP2|P450C2|P450C2A|P450PB HGNC:2607 19 19q13.2 cytochrome P450, family 2, subfamily A other CYP2A cytochrome P450, family 2, subfamily A O - 20120720 -9606 1548 CYP2A6 - CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB HGNC:2610|MIM:122720|Ensembl:ENSG00000255974|HPRD:00420 19 19q13.2 cytochrome P450, family 2, subfamily A, polypeptide 6 protein-coding CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6 O 1,4-cineole 2-exo-monooxygenase|coumarin 7-hydroxylase|cytochrome P450 2A6|cytochrome P450 IIA3|cytochrome P450(I)|cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 6|flavoprotein-linked monooxygenase|xenobiotic monooxygenase 20121230 -9606 1549 CYP2A7 - CPA7|CPAD|CYP2A|CYPIIA7|P450-IIA4 HGNC:2611|MIM:608054|Ensembl:ENSG00000198077|HPRD:07453 19 19q13.2 cytochrome P450, family 2, subfamily A, polypeptide 7 protein-coding CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7 O cytochrome P450 2A7|cytochrome P450 IIA4|cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 7|cytochrome P450IIA4 20121230 -9606 1550 CYP2A7P1 - CYP2A18PC|CYP2A18PN|CYP2A7P2|CYP2A7PT HGNC:2612 19 19q13.2 cytochrome P450, family 2, subfamily A, polypeptide 7 pseudogene 1 pseudo CYP2A7P1 cytochrome P450, family 2, subfamily A, polypeptide 7 pseudogene 1 O - 20121230 -9606 1551 CYP3A7 - CP37|CYPIIIA7|P450-HFLA HGNC:2640|MIM:605340|Ensembl:ENSG00000160870|HPRD:05630|Vega:OTTHUMG00000156726 7 7q21-q22.1 cytochrome P450, family 3, subfamily A, polypeptide 7 protein-coding CYP3A7 cytochrome P450, family 3, subfamily A, polypeptide 7 O aryl hydrocarbon hydroxylase|cytochrome P450 3A7|cytochrome P450, subfamily IIIA, polypeptide 7|cytochrome P450-HFLA|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1553 CYP2A13 - CPAD|CYP2A|CYPIIA13 HGNC:2608|MIM:608055|Ensembl:ENSG00000197838|HPRD:07454 19 19q13.2 cytochrome P450, family 2, subfamily A, polypeptide 13 protein-coding CYP2A13 cytochrome P450, family 2, subfamily A, polypeptide 13 O cytochrome P450 2A13|cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 13 20121230 -9606 1555 CYP2B6 - CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 HGNC:2615|MIM:123930|Ensembl:ENSG00000197408|HPRD:00477 19 19q13.2 cytochrome P450, family 2, subfamily B, polypeptide 6 protein-coding CYP2B6 cytochrome P450, family 2, subfamily B, polypeptide 6 O 1,4-cineole 2-exo-monooxygenase|cytochrome P450 2B6|cytochrome P450 IIB1|cytochrome P450, subfamily IIB (phenobarbital-inducible), polypeptide 6 20121230 -9606 1556 CYP2B7P1 - CYP2B|CYP2B7|CYP2B7P HGNC:2616 19 19q13.2 cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1 pseudo CYP2B7P1 cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1 O - 20121230 -9606 1557 CYP2C19 RP11-400G3.4 CPCJ|CYP2C|P450C2C|P450IIC19 HGNC:2621|MIM:124020|Ensembl:ENSG00000165841|HPRD:00486|Vega:OTTHUMG00000018799 10 10q24 cytochrome P450, family 2, subfamily C, polypeptide 19 protein-coding CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 O (R)-limonene 6-monooxygenase|(S)-limonene 6-monooxygenase|(S)-limonene 7-monooxygenase|CYPIIC17|CYPIIC19|S-mephenytoin 4-hydroxylase|cytochrome P-450 II C|cytochrome P450 2C19|cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 19|cytochrome P450-11A|cytochrome P450-254C|flavoprotein-linked monooxygenase|mephenytoin 4'-hydroxylase|mephenytoin 4-hydroxylase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1558 CYP2C8 - CPC8|CYPIIC8|MP-12/MP-20 HGNC:2622|MIM:601129|Ensembl:ENSG00000138115|HPRD:03083|Vega:OTTHUMG00000018804 10 10q23.33 cytochrome P450, family 2, subfamily C, polypeptide 8 protein-coding CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 O P450 form 1|cytochrome P450 2C8|cytochrome P450 IIC2|cytochrome P450 MP-12|cytochrome P450 MP-20|cytochrome P450 form 1|cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 8|flavoprotein-linked monooxygenase|microsomal monooxygenase|s-mephenytoin 4-hydroxylase|xenobiotic monooxygenase 20121230 -9606 1559 CYP2C9 RP11-208C17.6 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 HGNC:2623|MIM:601130|Ensembl:ENSG00000138109|HPRD:03084|Vega:OTTHUMG00000018805 10 10q24 cytochrome P450, family 2, subfamily C, polypeptide 9 protein-coding CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 O cytochrome P-450 S-mephenytoin 4-hydroxylase|cytochrome P-450MP|cytochrome P450 2C9|cytochrome P450 PB-1|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1562 CYP2C18 RP11-466J14.4 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 HGNC:2620|MIM:601131|Ensembl:ENSG00000108242|HPRD:03085|Vega:OTTHUMG00000018796 10 10q24 cytochrome P450, family 2, subfamily C, polypeptide 18 protein-coding CYP2C18 cytochrome P450, family 2, subfamily C, polypeptide 18 O (S)-mephenytoin hydroxylase associated cytochrome P450|CYPIIC18|cytochrome P450 2C18|cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 17|cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 18|cytochrome P450-6B/29C|flavoprotein-linked monooxygenase|microsomal monooxygenase|unspecific monooxygenase 20121230 -9606 1564 CYP2D7P1 - CYP2D|CYP2D7|CYP2D7AP|CYP2D@|P450C2D|P450DB1 HGNC:2624|HPRD:13108 22 22q13 cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1 pseudo CYP2D7P1 cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1 O - 20121230 -9606 1565 CYP2D6 RP4-669P10.2 CPD6|CYP2D|CYP2D7AP|CYP2D7BP|CYP2D7P2|CYP2D8P2|CYP2DL1|CYPIID6|P450-DB1|P450C2D|P450DB1 HGNC:2625|MIM:124030|Ensembl:ENSG00000100197|HPRD:00487|Vega:OTTHUMG00000150918 22 22q13.1 cytochrome P450, family 2, subfamily D, polypeptide 6 protein-coding CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6 O cytochrome P450 2D6|cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 2|cytochrome P450, family 2, subfamily D, polypeptide 8 pseudogene 2|cytochrome P450, subfamily II (debrisoquine, sparteine, etc., -metabolising), polypeptide 7 pseudogene 2|cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolising), polypeptide 8 pseudogene 2|cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolizing), polypeptide 6|cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolizing)-like 1|cytochrome P450-DB1|debrisoquine 4-hydroxylase|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1566 CYP2D7BP - - - 22 22q13.2 cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolising), polypeptide 7b (pseudogene) pseudo - - - - 20120720 -9606 1568 CYP2D8P1 - CYP2D8P|CYP2DP1 HGNC:2628 22 22q13.2 cytochrome P450, family 2, subfamily D, polypeptide 8 pseudogene 1 pseudo CYP2D8P1 cytochrome P450, family 2, subfamily D, polypeptide 8 pseudogene 1 O - 20121230 -9606 1571 CYP2E1 - CPE1|CYP2E|P450-J|P450C2E HGNC:2631|MIM:124040|Ensembl:ENSG00000130649|HPRD:11813|Vega:OTTHUMG00000019322 10 10q24.3-qter cytochrome P450, family 2, subfamily E, polypeptide 1 protein-coding CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 O 4-nitrophenol 2-hydroxylase|CYPIIE1|cytochrome P450 2E1|cytochrome P450, subfamily IIE (ethanol-inducible), polypeptide 1|cytochrome P450-J|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1572 CYP2F1 - C2F1|CYP2F HGNC:2632|MIM:124070|Ensembl:ENSG00000197446|HPRD:00490|Vega:OTTHUMG00000167412 19 19q13.2 cytochrome P450, family 2, subfamily F, polypeptide 1 protein-coding CYP2F1 cytochrome P450, family 2, subfamily F, polypeptide 1 O CYPIIF1|cytochrome P450 2F1|cytochrome P450, subfamily IIF, polypeptide 1|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1573 CYP2J2 - CPJ2 HGNC:2634|MIM:601258|Ensembl:ENSG00000134716|HPRD:03159|Vega:OTTHUMG00000008991 1 1p31.3-p31.2 cytochrome P450, family 2, subfamily J, polypeptide 2 protein-coding CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2 O CYPIIJ2|arachidonic acid epoxygenase|cytochrome P450 2J2|cytochrome P450, subfamily IIJ (arachidonic acid epoxygenase) polypeptide 2|flavoprotein-linked monooxygenase|microsomal monooxygenase 20121230 -9606 1574 CYP3A - CYP3 HGNC:2635 7 7q21.3-q22.1 cytochrome P450, family 3, subfamily A other CYP3A cytochrome P450, family 3, subfamily A O - 20120923 -9606 1576 CYP3A4 - CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1 HGNC:2637|MIM:124010|Ensembl:ENSG00000160868|HPRD:00484|Vega:OTTHUMG00000156651 7 7q21.1 cytochrome P450, family 3, subfamily A, polypeptide 4 protein-coding CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 O 1,8-cineole 2-exo-monooxygenase|P450-III, steroid inducible|albendazole monooxygenase|albendazole sulfoxidase|cytochrome P450 3A3|cytochrome P450 3A4|cytochrome P450 HLp|cytochrome P450 NF-25|cytochrome P450, subfamily IIIA (niphedipine oxidase), polypeptide 3|cytochrome P450, subfamily IIIA (niphedipine oxidase), polypeptide 4|cytochrome P450-PCN1|glucocorticoid-inducible P450|nifedipine oxidase|quinine 3-monooxygenase|taurochenodeoxycholate 6-alpha-hydroxylase 20121230 -9606 1577 CYP3A5 - CP35|CYPIIIA5|P450PCN3|PCN3 HGNC:2638|MIM:605325|Ensembl:ENSG00000106258|HPRD:05617|Vega:OTTHUMG00000156724 7 7q21.1 cytochrome P450, family 3, subfamily A, polypeptide 5 protein-coding CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 O aryl hydrocarbon hydroxylase|cytochrome P450 3A5|cytochrome P450 HLp2|cytochrome P450, subfamily IIIA (niphedipine oxidase), polypeptide 5|cytochrome P450-PCN3|flavoprotein-linked monooxygenase|microsomal monooxygenase|xenobiotic monooxygenase 20121230 -9606 1578 CYP3AP1 - CYP3A5P1 - 7 7q22.1 cytochrome P450, family 3, subfamily A, polypeptide 5 pseudogene 1 pseudo - - - - 20121230 -9606 1579 CYP4A11 - CP4Y|CYP4A2|CYP4AII HGNC:2642|MIM:601310|Ensembl:ENSG00000187048|HPRD:03201|Vega:OTTHUMG00000008020 1 1p33 cytochrome P450, family 4, subfamily A, polypeptide 11 protein-coding CYP4A11 cytochrome P450, family 4, subfamily A, polypeptide 11 O 20-HETE synthase|20-hydroxyeicosatetraenoic acid synthase|CYPIVA11|P450HL-omega|alkane-1 monooxygenase|cytochrome P-450HK-omega|cytochrome P450 4A11|cytochrome P450, subfamily IVA, polypeptide 11|cytochrome P450HL-omega|fatty acid omega-hydroxylase|lauric acid omega-hydroxylase 20121230 -9606 1580 CYP4B1 RP4-732G19.1 CYPIVB1|P-450HP HGNC:2644|MIM:124075|Ensembl:ENSG00000142973|HPRD:00491|Vega:OTTHUMG00000007984 1 1p34-p12 cytochrome P450, family 4, subfamily B, polypeptide 1 protein-coding CYP4B1 cytochrome P450, family 4, subfamily B, polypeptide 1 O cytochrome P450 4B1|cytochrome P450, subfamily IVB, polypeptide 1|cytochrome P450-HP|microsomal monooxygenase 20121230 -9606 1581 CYP7A1 - CP7A|CYP7|CYPVII HGNC:2651|MIM:118455|Ensembl:ENSG00000167910|HPRD:00324|Vega:OTTHUMG00000164301 8 8q11-q12 cytochrome P450, family 7, subfamily A, polypeptide 1 protein-coding CYP7A1 cytochrome P450, family 7, subfamily A, polypeptide 1 O cholesterol 7-alpha-hydroxylase|cholesterol 7-alpha-monooxygenase|cytochrome P450 7A1|cytochrome P450, subfamily VIIA polypeptide 1 20121230 -9606 1582 CYP8B1 - CP8B|CYP12 HGNC:2653|MIM:602172|Ensembl:ENSG00000180432|HPRD:03705|Vega:OTTHUMG00000133047 3 3p22.1 cytochrome P450, family 8, subfamily B, polypeptide 1 protein-coding CYP8B1 cytochrome P450, family 8, subfamily B, polypeptide 1 O 7 alpha-hydroxy-4-cholesten-3-one 12-alpha-hydroxylase|7-alpha-hydroxy-4-cholesten-3-one 12-alpha-hydroxylase|7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase|CYPVIIIB1|cytochrome P450 8B1|cytochrome P450, subfamily VIIIB (sterol 12-alpha-hydroxylase), polypeptide 1|sterol 12-alpha-hydroxylase 20121230 -9606 1583 CYP11A1 - CYP11A|CYPXIA1|P450SCC HGNC:2590|MIM:118485|Ensembl:ENSG00000140459|HPRD:00326|Vega:OTTHUMG00000150716 15 15q23-q24 cytochrome P450, family 11, subfamily A, polypeptide 1 protein-coding CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1 O cholesterol 20-22 desmolase|cholesterol monooxygenase (side-chain cleaving)|cholesterol side-chain cleavage enzyme, mitochondrial|cytochrome P450 11A1|cytochrome P450(scc)|cytochrome P450, subfamily XIA (cholesterol side chain cleavage)|cytochrome P450C11A1|steroid 20-22-lyase 20121230 -9606 1584 CYP11B1 - CPN1|CYP11B|FHI|P450C11 HGNC:2591|MIM:610613|Ensembl:ENSG00000160882|HPRD:01943|Vega:OTTHUMG00000164637 8 8q21 cytochrome P450, family 11, subfamily B, polypeptide 1 protein-coding CYP11B1 cytochrome P450, family 11, subfamily B, polypeptide 1 O CYPXIB1|cytochrome P-450c11|cytochrome P450 11B1, mitochondrial|cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 1|cytochrome P450C11|cytochrome p450 XIB1|steroid 11-beta-hydroxylase|steroid 11-beta-monooxygenase 20121230 -9606 1585 CYP11B2 - ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo HGNC:2592|MIM:124080|Ensembl:ENSG00000179142|HPRD:00492|Vega:OTTHUMG00000160254 8 8q21-q22 cytochrome P450, family 11, subfamily B, polypeptide 2 protein-coding CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2 O aldosterone synthase|aldosterone-synthesizing enzyme|cytochrome P-450Aldo|cytochrome P-450C18|cytochrome P450 11B2, mitochondrial|cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 2|mitochondrial cytochrome P450, family 11, subfamily B, polypeptide 2|steroid 11-beta-monooxygenase|steroid 11-beta/18-hydroxylase|steroid 18-hydroxylase, aldosterone synthase, P450C18, P450aldo 20121230 -9606 1586 CYP17A1 RP11-753C18.1 CPT7|CYP17|P450C17|S17AH HGNC:2593|MIM:609300|Ensembl:ENSG00000148795|HPRD:01944|Vega:OTTHUMG00000018969 10 10q24.3 cytochrome P450, family 17, subfamily A, polypeptide 1 protein-coding CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1 O CYPXVII|cytochrome P450 17A1|cytochrome P450, subfamily XVII (steroid 17-alpha-hydroxylase), adrenal hyperplasia|cytochrome P450-C17|cytochrome P450c17|cytochrome p450 XVIIA1|steroid 17-alpha-hydroxylase/17,20 lyase|steroid 17-alpha-monooxygenase 20121230 -9606 1587 ADAM3A - ADAM3|CYRN1|tMDCI HGNC:209 8 8p11.23 ADAM metallopeptidase domain 3A (pseudogene) pseudo ADAM3A ADAM metallopeptidase domain 3A (pseudogene) O - 20121230 -9606 1588 CYP19A1 - ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM HGNC:2594|MIM:107910|Ensembl:ENSG00000137869|HPRD:00488|Vega:OTTHUMG00000131747 15 15q21.1 cytochrome P450, family 19, subfamily A, polypeptide 1 protein-coding CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 O aromatase|cytochrome P-450AROM|cytochrome P450 19A1|cytochrome P450, subfamily XIX (aromatization of androgens)|estrogen synthase|estrogen synthetase|flavoprotein-linked monooxygenase|microsomal monooxygenase 20121230 -9606 1589 CYP21A2 DADB-112B14.10-001 CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B HGNC:2600|MIM:613815|Ensembl:ENSG00000231852|HPRD:01942|Vega:OTTHUMG00000031069 6 6p21.3 cytochrome P450, family 21, subfamily A, polypeptide 2 protein-coding CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 O 21-OHase|cytochrome P450 21|cytochrome P450 XXI|cytochrome P450, subfamily XXIA (steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2|cytochrome P450-C21B|steroid 21-hydroxylase|steroid 21-monooxygenase 20121230 -9606 1590 CYP21A1P - CYP21A|CYP21P|P450c21A HGNC:2599 6 6p21.3 cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene pseudo CYP21A1P cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene O - 20121230 -9606 1591 CYP24A1 - CP24|CYP24|HCAI|P450-CC24 HGNC:2602|MIM:126065|Ensembl:ENSG00000019186|HPRD:00522|Vega:OTTHUMG00000032773 20 20q13 cytochrome P450, family 24, subfamily A, polypeptide 1 protein-coding CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 O 1,25-@dihydroxyvitamin D3 24-hydroxylase|1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial|24-OHase|cytochrome P450 24A1|cytochrome P450, subfamily XXIV (vitamin D 24-hydroxylase)|cytochrome P450-CC24|exo-mitochondrial protein|vitamin D 24-hydroxylase|vitamin D(3) 24-hydroxylase 20121230 -9606 1592 CYP26A1 RP11-348J12.1 CP26|CYP26|P450RAI|P450RAI1 HGNC:2603|MIM:602239|Ensembl:ENSG00000095596|HPRD:03759|Vega:OTTHUMG00000018765 10 10q23-q24 cytochrome P450, family 26, subfamily A, polypeptide 1 protein-coding CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 O P450, retinoic acid-inactivating, 1|cytochrome P450 26A1|cytochrome P450 retinoic acid-inactivating 1|cytochrome P450, subfamily XXVIA, polypeptide 1|cytochrome P450RAI|hP450RAI|retinoic acid 4-hydroxylase|retinoic acid-metabolizing cytochrome 20121230 -9606 1593 CYP27A1 - CP27|CTX|CYP27 HGNC:2605|MIM:606530|Ensembl:ENSG00000135929|HPRD:05939|Vega:OTTHUMG00000048238 2 2q33-qter cytochrome P450, family 27, subfamily A, polypeptide 1 protein-coding CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1 O 5-beta-cholestane-3-alpha, 7-alpha, 12-alpha-triol 26-hydroxylase|5-beta-cholestane-3-alpha, 7-alpha, 12-alpha-triol 27-hydroxylase|5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol 27-hydroxylase|cholestanetriol 26-monooxygenase|cytochrome P-450C27/25|cytochrome P450 27|cytochrome P450, subfamily XXVIIA (steroid 27-hydroxylase, cerebrotendinous xanthomatosis), polypeptide 1|sterol 26-hydroxylase, mitochondrial|sterol 27-hydroxylase|vitamin D(3) 25-hydroxylase 20121230 -9606 1594 CYP27B1 - CP2B|CYP1|CYP1alpha|CYP27B|P450c1|PDDR|VDD1|VDDR|VDDRI|VDR HGNC:2606|MIM:609506|Ensembl:ENSG00000111012|HPRD:02031|Vega:OTTHUMG00000170457 12 12q13.1-q13.3 cytochrome P450, family 27, subfamily B, polypeptide 1 protein-coding CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 O 1alpha(OH)ase|25 hydroxyvitamin D3-1-alpha hydroxylase|25-OHD-1 alpha-hydroxylase|25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial|VD3 1A hydroxylase|calcidiol 1-monooxygenase|cytochrome P450 subfamily XXVIIB polypeptide 1|cytochrome P450C1 alpha|cytochrome P450VD1-alpha|cytochrome p450 27B1 20121230 -9606 1595 CYP51A1 - CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 HGNC:2649|MIM:601637|Ensembl:ENSG00000001630|HPRD:03381|Vega:OTTHUMG00000131131 7 7q21.2 cytochrome P450, family 51, subfamily A, polypeptide 1 protein-coding CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1 O CYPLI|cytochrome P450 51A1|cytochrome P450, 51 (lanosterol 14-alpha-demethylase)|cytochrome P450-14DM|cytochrome P45014DM|cytochrome P450LI|lanosterol 14-alpha demethylase|lanosterol 14-alpha-demethylase|sterol 14-alpha demethylase 20121230 -9606 1596 ADAM3B - CYRN2 HGNC:210 16 16q12.1 ADAM metallopeptidase domain 3B (pseudogene) pseudo ADAM3B ADAM metallopeptidase domain 3B (pseudogene) O - 20121230 -9606 1600 DAB1 RP6-239D12.2 - HGNC:2661|MIM:603448|Ensembl:ENSG00000173406|HPRD:04582|Vega:OTTHUMG00000008391 1 1p32-p31 disabled homolog 1 (Drosophila) protein-coding DAB1 disabled homolog 1 (Drosophila) O disabled homolog 1 20121230 -9606 1601 DAB2 - DOC-2|DOC2 HGNC:2662|MIM:601236|Ensembl:ENSG00000153071|HPRD:03139|Vega:OTTHUMG00000162043 5 5p13 disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) protein-coding DAB2 disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) O differentially-expressed protein 2|disabled homolog 2 20121230 -9606 1602 DACH1 RP11-512J14.1 DACH HGNC:2663|MIM:603803|Ensembl:ENSG00000165659|HPRD:16031|Vega:OTTHUMG00000017063 13 13q22 dachshund homolog 1 (Drosophila) protein-coding DACH1 dachshund homolog 1 (Drosophila) O dachshund homolog 1 20121230 -9606 1603 DAD1 - OST2 HGNC:2664|MIM:600243|Ensembl:ENSG00000129562|HPRD:02589|Vega:OTTHUMG00000028685 14 14q11.2 defender against cell death 1 protein-coding DAD1 defender against cell death 1 O DAD-1|dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1|oligosaccharyl transferase subunit DAD1|oligosaccharyltransferase 2 homolog 20121230 -9606 1604 CD55 RP11-357P18.1 CR|CROM|DAF|TC HGNC:2665|MIM:125240|Ensembl:ENSG00000196352|HPRD:00500|Vega:OTTHUMG00000036255 1 1q32 CD55 molecule, decay accelerating factor for complement (Cromer blood group) protein-coding CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) O CD55 antigen|complement decay-accelerating factor 20121230 -9606 1605 DAG1 - 156DAG|A3a|AGRNR|DAG|MDDGC7 HGNC:2666|MIM:128239|Ensembl:ENSG00000173402|HPRD:00546|Vega:OTTHUMG00000156869 3 3p21 dystroglycan 1 (dystrophin-associated glycoprotein 1) protein-coding DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) O dystroglycan 20121230 -9606 1606 DGKA - DAGK|DAGK1|DGK-alpha HGNC:2849|MIM:125855|Ensembl:ENSG00000065357|HPRD:00517|Vega:OTTHUMG00000170109 12 12q13.3 diacylglycerol kinase, alpha 80kDa protein-coding DGKA diacylglycerol kinase, alpha 80kDa O 80 kDa diacylglycerol kinase|DAG kinase alpha|diacylglycerol kinase alpha|diglyceride kinase alpha 20121230 -9606 1607 DGKB - DAGK2|DGK|DGK-BETA HGNC:2850|MIM:604070|Ensembl:ENSG00000136267|HPRD:06819|Vega:OTTHUMG00000152477 7 7p21.2 diacylglycerol kinase, beta 90kDa protein-coding DGKB diacylglycerol kinase, beta 90kDa O 90 kDa diacylglycerol kinase|DAG kinase beta|diacylglycerol kinase beta|diglyceride kinase beta 20121230 -9606 1608 DGKG - DAGK3|DGK-GAMMA HGNC:2853|MIM:601854|Ensembl:ENSG00000058866|HPRD:03510|Vega:OTTHUMG00000156617 3 3q27.2-q27.3 diacylglycerol kinase, gamma 90kDa protein-coding DGKG diacylglycerol kinase, gamma 90kDa O DAG kinase gamma|diacylglycerol kinase gamma|diacylglyerol kinase gamma|diglyceride kinase gamma 20121230 -9606 1609 DGKQ - DAGK|DAGK4|DAGK7 HGNC:2856|MIM:601207|Ensembl:ENSG00000145214|HPRD:03127|Vega:OTTHUMG00000088629 4 4p16.3 diacylglycerol kinase, theta 110kDa protein-coding DGKQ diacylglycerol kinase, theta 110kDa O DAG kinase theta|DGK-theta|diacylglycerol kinase theta|diglyceride kinase theta 20121230 -9606 1610 DAO - DAAO|DAMOX|OXDA HGNC:2671|MIM:124050|Ensembl:ENSG00000110887|HPRD:15917|Vega:OTTHUMG00000169360 12 12q24 D-amino-acid oxidase protein-coding DAO D-amino-acid oxidase O D-amino acid oxidase 20121230 -9606 1611 DAP - - HGNC:2672|MIM:600954|Ensembl:ENSG00000112977|HPRD:02977|Vega:OTTHUMG00000131041 5 5p15.2 death-associated protein protein-coding DAP death-associated protein O DAP-1|death-associated protein 1 20121230 -9606 1612 DAPK1 - DAPK HGNC:2674|MIM:600831|Ensembl:ENSG00000196730|HPRD:02902|Vega:OTTHUMG00000020150 9 9q21.33 death-associated protein kinase 1 protein-coding DAPK1 death-associated protein kinase 1 O DAP kinase 1 20121230 -9606 1613 DAPK3 - ZIP|ZIPK HGNC:2676|MIM:603289|Ensembl:ENSG00000167657|HPRD:04478 19 19p13.3 death-associated protein kinase 3 protein-coding DAPK3 death-associated protein kinase 3 O DAP kinase 3|DAP-like kinase|MYPT1 kinase|ZIP kinase isoform|ZIP-kinase|dlk|zipper-interacting protein kinase 20121230 -9606 1615 DARS PIG40 - HGNC:2678|MIM:603084|Ensembl:ENSG00000115866|HPRD:04361|Vega:OTTHUMG00000131741 2 2q21.3 aspartyl-tRNA synthetase protein-coding DARS aspartyl-tRNA synthetase O aspRS|aspartate tRNA ligase 1, cytoplasmic|aspartate--tRNA ligase, cytoplasmic|aspartyl-tRNA synthetase, cytoplasmic|cell proliferation-inducing gene 40 protein|cell proliferation-inducing protein 40 20121230 -9606 1616 DAXX DADB-159G18.9 BING2|DAP6|EAP1 HGNC:2681|MIM:603186|Ensembl:ENSG00000204209|HPRD:04424|Vega:OTTHUMG00000031203 6 6p21.3 death-domain associated protein protein-coding DAXX death-domain associated protein O CENP-C binding protein|ETS1-associated protein 1|Fas-binding protein|death domain-associated protein 6|death-associated protein 6|fas death domain-associated protein 20121230 -9606 1617 DAZ1 - DAZ|SPGY HGNC:2682|MIM:400003|Ensembl:ENSG00000188120|HPRD:15958|Vega:OTTHUMG00000044053 Y Yq11.223 deleted in azoospermia 1 protein-coding DAZ1 deleted in azoospermia 1 O deleted in azoospermia protein 1 20121230 -9606 1618 DAZL - DAZH|DAZL1|DAZLA|SPGYLA HGNC:2685|MIM:601486|Ensembl:ENSG00000092345|HPRD:09029|Vega:OTTHUMG00000157050 3 3p24.3 deleted in azoospermia-like protein-coding DAZL deleted in azoospermia-like O DAZ homolog|DAZ-like autosomal|SPGY-like-autosomal|deleted in azoospermia-like 1|germline specific RNA binding protein|spermatogenesis gene on the Y-like autosomal 20121230 -9606 1620 DBC1 IB3089A BRINP1|DBCCR1|FAM5A HGNC:2687|MIM:602865|Ensembl:ENSG00000078725|HPRD:04181|Vega:OTTHUMG00000021020 9 9q32-q33 deleted in bladder cancer 1 protein-coding DBC1 deleted in bladder cancer 1 O bA574M5.1 (deleted in bladder cancer chromosome region candidate 1 (IB3089A))|deleted in bladder cancer chromosome region candidate 1|deleted in bladder cancer protein 1 20121230 -9606 1621 DBH RP11-317B10.1 DBM HGNC:2689|MIM:609312|Ensembl:ENSG00000123454|HPRD:01963|Vega:OTTHUMG00000020878 9 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) protein-coding DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) O dopamine beta-hydroxylase 20121230 -9606 1622 DBI - ACBD1|ACBP|CCK-RP|EP HGNC:2690|MIM:125950|Ensembl:ENSG00000155368|HPRD:08832|Vega:OTTHUMG00000131403 2 2q12-q21 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) protein-coding DBI diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) O GABA receptor modulator|acyl coenzyme A binding protein|acyl-CoA-binding protein|acyl-Coenzyme A binding domain containing 1|cholecystokinin-releasing peptide, trypsin-sensitive|diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein)|diazepam-binding inhibitor|endozepine 20121230 -9606 1623 DBIP2 - DBIL1 HGNC:2691 5 5q14.1 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 2 pseudo DBIP2 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 2 O - 20121230 -9606 1624 DBIP1 - DBIL2 HGNC:2692 6 6q14.1 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 1 pseudo DBIP1 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 1 O - 20121230 -9606 1627 DBN1 - D0S117E HGNC:2695|MIM:126660|Ensembl:ENSG00000113758|HPRD:00545|Vega:OTTHUMG00000130856 5 5q35.3 drebrin 1 protein-coding DBN1 drebrin 1 O developmentally-regulated brain protein|drebrin|drebrin E|drebrin E2|drebrin-1 20121230 -9606 1628 DBP - DABP HGNC:2697|MIM:124097|Ensembl:ENSG00000105516|HPRD:00497 19 19q13.3 D site of albumin promoter (albumin D-box) binding protein protein-coding DBP D site of albumin promoter (albumin D-box) binding protein O D site-binding protein|albumin D box-binding protein|albumin D-element-binding protein|tax-responsive enhancer element-binding protein 302|taxREB302 20121230 -9606 1629 DBT RP11-305E17.3 BCATE2|BCKAD-E2|BCKADE2|E2|E2B HGNC:2698|MIM:248610|Ensembl:ENSG00000137992|HPRD:02010|Vega:OTTHUMG00000010921 1 1p31 dihydrolipoamide branched chain transacylase E2 protein-coding DBT dihydrolipoamide branched chain transacylase E2 O BCKAD E2 subunit|E2 component of branched chain alpha-keto acid dehydrogenase complex|branched chain acyltransferase, E2 component|branched-chain alpha-keto acid dehydrogenase complex component E2|dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex|dihydrolipoyl transacylase|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase|lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial|lipoamide acyltransferase component of mitochondrial branched-chain alpha-keto acid dehydrogenase complex|mitochondrial branched chain alpha-keto acid dehydrogenase transacylase subunit (E2b) 20121230 -9606 1630 DCC - CRC18|CRCR1|IGDCC1 HGNC:2701|MIM:120470|Ensembl:ENSG00000187323|HPRD:00391|Vega:OTTHUMG00000132698 18 18q21.3 deleted in colorectal carcinoma protein-coding DCC deleted in colorectal carcinoma O colorectal cancer suppressor|colorectal tumor suppressor|deleted in colorectal cancer protein|immunoglobulin superfamily DCC subclass member 1|immunoglobulin superfamily, DCC subclass, member 1|netrin receptor DCC|tumor suppressor protein DCC 20121230 -9606 1632 ECI1 - DCI HGNC:2703|MIM:600305|Ensembl:ENSG00000167969|HPRD:02628|Vega:OTTHUMG00000128830 16 16p13.3 enoyl-CoA delta isomerase 1 protein-coding ECI1 enoyl-CoA delta isomerase 1 O 3,2 trans-enoyl-CoA isomerase|3,2 trans-enoyl-Coenzyme A isomerase|3,2-trans-enoyl-CoA isomerase, mitochondrial|D3,D2-enoyl-CoA isomerase|acetylene-allene isomerase|delta(3),Delta(2)-enoyl-CoA isomerase|delta3, delta2-enoyl-CoA isomerase|dodecenoyl-CoA delta isomerase (3,2 trans-enoyl-CoA isomerase)|dodecenoyl-CoA isomerase|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase)|enoyl-CoA delta isomerase 1, mitochondrial 20121230 -9606 1633 DCK - - HGNC:2704|MIM:125450|Ensembl:ENSG00000156136|HPRD:00507|Vega:OTTHUMG00000129908 4 4q13.3-q21.1 deoxycytidine kinase protein-coding DCK deoxycytidine kinase O deoxynucleoside kinase 20121230 -9606 1634 DCN - CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B HGNC:2705|MIM:125255|Ensembl:ENSG00000011465|HPRD:00501|Vega:OTTHUMG00000169998 12 12q21.33 decorin protein-coding DCN decorin O PG-S2|bone proteoglycan II|decorin proteoglycan|dermatan sulphate proteoglycans II|proteoglycan core protein|small leucine-rich protein 1B 20121230 -9606 1635 DCTD - - HGNC:2710|MIM:607638|Ensembl:ENSG00000129187|HPRD:09623|Vega:OTTHUMG00000160685 4 4q35.1 dCMP deaminase protein-coding DCTD dCMP deaminase O deoxycytidylate deaminase 20121230 -9606 1636 ACE - ACE1|CD143|DCP|DCP1|ICH|MVCD3 HGNC:2707|MIM:106180|Ensembl:ENSG00000159640|HPRD:00108|Vega:OTTHUMG00000154927 17 17q23.3 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 protein-coding ACE angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 O CD143 antigen|angiotensin I converting enzyme peptidyl-dipeptidase A 1 transcript|angiotensin converting enzyme, somatic isoform|angiotensin-converting enzyme|carboxycathepsin|dipeptidyl carboxypeptidase 1|dipeptidyl carboxypeptidase I|kininase II|peptidase P|testicular ECA 20121230 -9606 1637 DCR - DSCR HGNC:2708|MIM:190685 21 21q22.3 Down syndrome chromosome region other DCR Down syndrome chromosome region O - 20120622 -9606 1638 DCT - TRP-2|TYRP2 HGNC:2709|MIM:191275|Ensembl:ENSG00000080166|HPRD:01864|Vega:OTTHUMG00000017206 13 13q32 dopachrome tautomerase protein-coding DCT dopachrome tautomerase O DT|L-dopachrome Delta-isomerase|L-dopachrome tautomerase|TRP2|dopachrome delta-isomerase|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)|tyrosinase-related protein 2|tyrosine-related protein 2 20121230 -9606 1639 DCTN1 - DAP-150|DP-150|P135 HGNC:2711|MIM:601143|Ensembl:ENSG00000204843|HPRD:07206|Vega:OTTHUMG00000129963 2 2p13 dynactin 1 protein-coding DCTN1 dynactin 1 O 150 kDa dynein-associated polypeptide|dynactin 1 (p150, glued homolog, Drosophila)|dynactin subunit 1 20121230 -9606 1641 DCX RP5-914P14.1 DBCN|DC|LISX|SCLH|XLIS HGNC:2714|MIM:300121|Ensembl:ENSG00000077279|HPRD:02127|Vega:OTTHUMG00000022204 X Xq22.3-q23 doublecortin protein-coding DCX doublecortin O doublecortex|doublin|lis-X|lissencephalin-X|neuronal migration protein doublecortin 20121230 -9606 1642 DDB1 - DDBA|UV-DDB1|XAP1|XPCE|XPE|XPE-BF HGNC:2717|MIM:600045|Ensembl:ENSG00000167986|HPRD:10952|Vega:OTTHUMG00000168209 11 11q12-q13 damage-specific DNA binding protein 1, 127kDa protein-coding DDB1 damage-specific DNA binding protein 1, 127kDa O DDB p127 subunit|DNA damage-binding protein 1|DNA damage-binding protein a|HBV X-associated protein 1|UV-DDB 1|UV-damaged DNA-binding factor|UV-damaged DNA-binding protein 1|XAP-1|XPE-binding factor|xeroderma pigmentosum group E-complementing protein 20121230 -9606 1643 DDB2 - DDBB|UV-DDB2 HGNC:2718|MIM:600811|Ensembl:ENSG00000134574|HPRD:02886 11 11p12-p11 damage-specific DNA binding protein 2, 48kDa protein-coding DDB2 damage-specific DNA binding protein 2, 48kDa O DDB p48 subunit|DNA damage-binding protein 2|UV-DDB 2|UV-damaged DNA-binding protein 2|damage-specific DNA-binding protein 2|xeroderma pigmentosum group E protein 20121230 -9606 1644 DDC - AADC HGNC:2719|MIM:107930|Ensembl:ENSG00000132437|HPRD:00145|Vega:OTTHUMG00000023353 7 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) protein-coding DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) O aromatic-L-amino-acid decarboxylase 20121230 -9606 1645 AKR1C1 RP11-69D4.1 2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB HGNC:384|MIM:600449|Ensembl:ENSG00000187134|HPRD:07194|Vega:OTTHUMG00000017580 10 10p15-p14 aldo-keto reductase family 1, member C1 protein-coding AKR1C1 aldo-keto reductase family 1, member C1 O 20 alpha-hydroxysteroid dehydrogenase|20-alpha-hydroxysteroid dehydrogenase|aldo-keto reductase C|aldo-keto reductase family 1 member C1|chlordecone reductase homolog HAKRC|dihydrodiol dehydrogenase 1|dihydrodiol dehydrogenase 1/2|dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase|dihydrodiol dehydrogenase isoform DD1|hepatic dihydrodiol dehydrogenase|high-affinity hepatic bile acid-binding protein|indanol dehydrogenase|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase|type II 3-alpha-hydroxysteroid dehydrogenase 20121230 -9606 1646 AKR1C2 - AKR1C-pseudo|BABP|DD|DD2|DDH2|HAKRD|HBAB|MCDR2|SRXY8 HGNC:385|MIM:600450|Ensembl:ENSG00000151632|HPRD:11857|Vega:OTTHUMG00000017584 10 10p15-p14 aldo-keto reductase family 1, member C2 protein-coding AKR1C2 aldo-keto reductase family 1, member C2 O 3-alpha-HSD3|DD-2|DD/BABP|aldo-keto reductase family 1 member C2|chlordecone reductase homolog HAKRD|dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III|pseudo-chlordecone reductase|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase|type II dihydrodiol dehydrogenase 20121230 -9606 1647 GADD45A RP5-975D15.1 DDIT1|GADD45 HGNC:4095|MIM:126335|Ensembl:ENSG00000116717|HPRD:00528|Vega:OTTHUMG00000009374 1 1p31.2 growth arrest and DNA-damage-inducible, alpha protein-coding GADD45A growth arrest and DNA-damage-inducible, alpha O DDIT-1|DNA damage-inducible transcript 1 protein|DNA damage-inducible transcript-1|DNA-damage-inducible transcript 1|growth arrest and DNA damage-inducible protein GADD45 alpha|growth arrest and DNA-damage-inducible 45 alpha 20121230 -9606 1648 GADD45AP1 - DDIT1L|GADD45AL HGNC:2725 12 12q growth arrest and DNA-damage-inducible, alpha pseudogene 1 pseudo GADD45AP1 growth arrest and DNA-damage-inducible, alpha pseudogene 1 O - 20121230 -9606 1649 DDIT3 - CEBPZ|CHOP|CHOP-10|CHOP10|GADD153 HGNC:2726|MIM:126337|Ensembl:ENSG00000175197|HPRD:00529|Vega:OTTHUMG00000170046 12 12q13.1-q13.2 DNA-damage-inducible transcript 3 protein-coding DDIT3 DNA-damage-inducible transcript 3 O C/EBP zeta|CCAAT/enhancer-binding protein homologous protein|DDIT-3|DNA damage-inducible transcript 3 protein|c/EBP-homologous protein 10|growth arrest and DNA damage-inducible protein GADD153 20121230 -9606 1650 DDOST OK/SW-cl.45 AGER1|CDG1R|OKSWcl45|OST|OST48|WBP1 HGNC:2728|MIM:602202|Ensembl:ENSG00000244038|HPRD:03728|Vega:OTTHUMG00000002844 1 1p36.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase protein-coding DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase O advanced glycation endproduct receptor 1|dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit|dolichyl-diphosphooligosaccharide-protein glycotransferase|oligosaccharyl transferase 48 kDa subunit|oligosaccharyltransferase 48 kDa subunit 20121230 -9606 1652 DDT hCG_41098 DDCT HGNC:2732|MIM:602750|Ensembl:ENSG00000099977|HPRD:04126|Vega:OTTHUMG00000150798 22 22q11.23 D-dopachrome tautomerase protein-coding DDT D-dopachrome tautomerase O D-dopachrome decarboxylase|phenylpyruvate tautomerase II 20121230 -9606 1653 DDX1 - DBP-RB|UKVH5d HGNC:2734|MIM:601257|Ensembl:ENSG00000079785|HPRD:03158|Vega:OTTHUMG00000090593 2 2p24 DEAD (Asp-Glu-Ala-Asp) box helicase 1 protein-coding DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 O ATP-dependent RNA helicase DDX1|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1|DEAD box polypeptide 1|DEAD box protein 1|DEAD box protein retinoblastoma|DEAD box-1|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 1 20121230 -9606 1654 DDX3X - DBX|DDX14|DDX3|HLP2 HGNC:2745|MIM:300160|Ensembl:ENSG00000215301|HPRD:02154|Vega:OTTHUMG00000021369 X Xp11.3-p11.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked protein-coding DDX3X DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked O ATP-dependent RNA helicase DDX3X|CAP-Rf|DEAD box protein 3, X-chromosomal|DEAD box, X isoform|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3|DEAD/H box-3|helicase like protein 2|helicase-like protein 2 20121230 -9606 1655 DDX5 - G17P1|HLR1|HUMP68|p68 HGNC:2746|MIM:180630|Ensembl:ENSG00000108654|HPRD:01615|Vega:OTTHUMG00000178936 17 17q21 DEAD (Asp-Glu-Ala-Asp) box helicase 5 protein-coding DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 O ATP-dependent RNA helicase DDX5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5|DEAD box protein 5|DEAD box-5|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)|RNA helicase p68|probable ATP-dependent RNA helicase DDX5 20121230 -9606 1656 DDX6 - HLR2|P54|RCK HGNC:2747|MIM:600326|Ensembl:ENSG00000110367|HPRD:02638|Vega:OTTHUMG00000166411 11 11q23.3 DEAD (Asp-Glu-Ala-Asp) box helicase 6 protein-coding DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 O ATP-dependent RNA helicase p54|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6|DEAD box protein 6|DEAD box-6|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 (RNA helicase, 54kD)|oncogene RCK|probable ATP-dependent RNA helicase DDX6 20121230 -9606 1657 DMXL1 - - HGNC:2937|MIM:605671|Ensembl:ENSG00000172869|HPRD:09294|Vega:OTTHUMG00000128898 5 5q22 Dmx-like 1 protein-coding DMXL1 Dmx-like 1 O X-like 1 protein|dmX-like protein 1 20121230 -9606 1659 DHX8 - DDX8|HRH1|PRP22|PRPF22 HGNC:2749|MIM:600396|Ensembl:ENSG00000067596|HPRD:02672|Vega:OTTHUMG00000180883 17 17q21.31 DEAH (Asp-Glu-Ala-His) box polypeptide 8 protein-coding DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 O ATP-dependent RNA helicase DHX8|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase)|DEAH box protein 8|DEAH-box protein 8|RNA helicase HRH1 20121230 -9606 1660 DHX9 - DDX9|LKP|NDH2|NDHII|RHA HGNC:2750|MIM:603115|Ensembl:ENSG00000135829|HPRD:04386|Vega:OTTHUMG00000035337 1 1q25 DEAH (Asp-Glu-Ala-His) box polypeptide 9 protein-coding DHX9 DEAH (Asp-Glu-Ala-His) box polypeptide 9 O ATP-dependent RNA helicase A|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 9|DEAH box protein 9|leukophysin|nuclear DNA helicase II 20121230 -9606 1661 DHX9P1 - DDX9P|DHX9P HGNC:2751 13 13q21 DEAH (Asp-Glu-Ala-His) box polypeptide 9 pseudogene 1 pseudo DHX9P1 DEAH (Asp-Glu-Ala-His) box polypeptide 9 pseudogene 1 O - 20121230 -9606 1662 DDX10 - HRH-J8 HGNC:2735|MIM:601235|Ensembl:ENSG00000178105|HPRD:03138|Vega:OTTHUMG00000166540 11 11q22-q23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 protein-coding DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 O DDX10-NUP98 fusion protein type 2|DEAD box protein 10|DEAD box-10|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase)|probable ATP-dependent RNA helicase DDX10 20121230 -9606 1663 DDX11 - CHL1|CHLR1|KRG2|WABS HGNC:2736|MIM:601150|Ensembl:ENSG00000013573|HPRD:03095|Vega:OTTHUMG00000168435 12 12p11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 protein-coding DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 O CHL1-like helicase homolog|CHL1-related helicase gene-1|CHL1-related protein 1|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)|DEAD/H box protein 11|KRG-2|hCHLR1|keratinocyte growth factor-regulated gene 2 protein|probable ATP-dependent RNA helicase DDX11 20121230 -9606 1665 DHX15 - DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p HGNC:2738|MIM:603403|Ensembl:ENSG00000109606|HPRD:04553|Vega:OTTHUMG00000160304 4 4p15.3 DEAH (Asp-Glu-Ala-His) box polypeptide 15 protein-coding DHX15 DEAH (Asp-Glu-Ala-His) box polypeptide 15 O ATP-dependent RNA helicase #46|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 15|DEAD/H box-15|DEAH box protein 15|RNA helicase 2|putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 20121230 -9606 1666 DECR1 - DECR|NADPH|SDR18C1 HGNC:2753|MIM:222745|Ensembl:ENSG00000104325|HPRD:01959|Vega:OTTHUMG00000163829 8 8q21.3 2,4-dienoyl CoA reductase 1, mitochondrial protein-coding DECR1 2,4-dienoyl CoA reductase 1, mitochondrial O 2,4-dienoyl-CoA reductase, mitochondrial|4-enoyl-CoA reductase|short chain dehydrogenase/reductase family 18C, member 1 20121230 -9606 1667 DEFA1 - DEF1|DEFA2|HNP-1|HP-1|HP1|MRS HGNC:2761|MIM:125220|Ensembl:ENSG00000206047|HPRD:00499|Vega:OTTHUMG00000154594 8 8p23.1 defensin, alpha 1 protein-coding DEFA1 defensin, alpha 1 O defensin, alpha 1, myeloid-related sequence|defensin, alpha 2|myeloid-related sequence|neutrophil defensin 1 20121230 -9606 1668 DEFA3 - DEF3|HNP-3|HNP3|HP-3|HP3 HGNC:2762|MIM:604522|Ensembl:ENSG00000239839|HPRD:05159|Vega:OTTHUMG00000090381 8 8p23.1 defensin, alpha 3, neutrophil-specific protein-coding DEFA3 defensin, alpha 3, neutrophil-specific O defensin 3, neutrophil-specific|neutrophil defensin 3|neutrophil peptide 3 20121230 -9606 1669 DEFA4 - DEF4|HNP-4|HP-4|HP4 HGNC:2763|MIM:601157|Ensembl:ENSG00000164821|HPRD:03099|Vega:OTTHUMG00000090382 8 8p23 defensin, alpha 4, corticostatin protein-coding DEFA4 defensin, alpha 4, corticostatin O corticostatin|defensin, alpha 4, preproprotein|neutrophil defensin 4 20121230 -9606 1670 DEFA5 - DEF5|HD-5 HGNC:2764|MIM:600472|Ensembl:ENSG00000164816|HPRD:02720|Vega:OTTHUMG00000090383 8 8p23.1 defensin, alpha 5, Paneth cell-specific protein-coding DEFA5 defensin, alpha 5, Paneth cell-specific O HD5(20-94)|defensin 5|defensin, alpha 5, preproprotein|defensin-5 20121230 -9606 1671 DEFA6 - DEF6|HD-6 HGNC:2765|MIM:600471|Ensembl:ENSG00000164822|HPRD:02719|Vega:OTTHUMG00000149984 8 8p23.1 defensin, alpha 6, Paneth cell-specific protein-coding DEFA6 defensin, alpha 6, Paneth cell-specific O defensin 6|defensin-6 20121230 -9606 1672 DEFB1 - BD1|DEFB-1|DEFB101|HBD1 HGNC:2766|MIM:602056|Ensembl:ENSG00000164825|HPRD:03634|Vega:OTTHUMG00000090367 8 8p23.1 defensin, beta 1 protein-coding DEFB1 defensin, beta 1 O BD-1|beta-defensin 1|beta-defensin-1 20121230 -9606 1673 DEFB4A - BD-2|DEFB-2|DEFB102|DEFB2|DEFB4|HBD-2|SAP1 HGNC:2767|MIM:602215|Ensembl:ENSG00000171711|HPRD:03739|Vega:OTTHUMG00000129314 8 8p23.1 defensin, beta 4A protein-coding DEFB4A defensin, beta 4A O beta-defensin 4A|defensin, beta 2|defensin, beta 4|skin-antimicrobial peptide 1 20121230 -9606 1674 DES - ARVC7|ARVD7|CMD1I|CSM1|CSM2|MFM1|SCPNK HGNC:2770|MIM:125660|Ensembl:ENSG00000175084|HPRD:00514|Vega:OTTHUMG00000058924 2 2q35 desmin protein-coding DES desmin O intermediate filament protein 20121230 -9606 1675 CFD - ADIPSIN|ADN|DF|PFD HGNC:2771|MIM:134350|Ensembl:ENSG00000197766|HPRD:00600|Vega:OTTHUMG00000181840 19 19p13.3 complement factor D (adipsin) protein-coding CFD complement factor D (adipsin) O C3 convertase activator|D component of complement (adipsin)|complement factor D|complement factor D preproprotein|properdin factor D 20121230 -9606 1676 DFFA H13 DFF-45|DFF1|ICAD HGNC:2772|MIM:601882|Ensembl:ENSG00000160049|HPRD:03531|Vega:OTTHUMG00000001909 1 1p36.3-p36.2 DNA fragmentation factor, 45kDa, alpha polypeptide protein-coding DFFA DNA fragmentation factor, 45kDa, alpha polypeptide O DFF45|DNA fragmentation factor 45 kDa subunit|DNA fragmentation factor subunit alpha|inhibitor of CAD 20121230 -9606 1677 DFFB RP13-531C17.1 CAD|CPAN|DFF-40|DFF2|DFF40 HGNC:2773|MIM:601883|Ensembl:ENSG00000169598|HPRD:03532|Vega:OTTHUMG00000003525 1 1p36.3 DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) protein-coding DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) O DNA fragmentation factor 40 kDa subunit|DNA fragmentation factor subunit beta|caspase-activated DNase|caspase-activated deoxyribonuclease|caspase-activated nuclease 20121230 -9606 1678 TIMM8A - DDP|DDP1|DFN1|MTS|TIM8 HGNC:11817|MIM:300356|Ensembl:ENSG00000126953|HPRD:02287|Vega:OTTHUMG00000022028 X Xq22.1 translocase of inner mitochondrial membrane 8 homolog A (yeast) protein-coding TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast) O X-linked deafness dystonia protein|deafness dystonia protein 1|deafness/dystonia peptide|mitochondrial import inner membrane translocase subunit Tim8 A 20121230 -9606 1680 DFN4 - - HGNC:2777|MIM:300030 X Xp21.2 deafness, X-linked 4, congenital sensorineural unknown DFN4 deafness, X-linked 4, congenital sensorineural O - 20120622 -9606 1681 DFN5 - - HGNC:2778 - - deafness, X-linked 5 unknown DFN5 deafness, X-linked 5 O - 20110215 -9606 1682 DFN6 - - HGNC:2779|MIM:300066 X Xp22 deafness, X-linked 6, sensorineural unknown DFN6 deafness, X-linked 6, sensorineural O - 20120908 -9606 1684 DFN8 - - HGNC:2781 - - deafness, X-linked 8 unknown DFN8 deafness, X-linked 8 O - 20110215 -9606 1687 DFNA5 - ICERE-1 HGNC:2810|MIM:608798|Ensembl:ENSG00000105928|HPRD:02996|Vega:OTTHUMG00000023237 7 7p15 deafness, autosomal dominant 5 protein-coding DFNA5 deafness, autosomal dominant 5 O inversely correlated with estrogen receptor expression 1|non-syndromic hearing impairment protein 5|nonsyndromic hearing impairment protein 20121230 -9606 1689 DFNA7 - - HGNC:2812|MIM:601412 1 1q21-q23 deafness, autosomal dominant 7 unknown DFNA7 deafness, autosomal dominant 7 O - 20120622 -9606 1690 COCH UNQ257/PRO294 COCH-5B2|COCH5B2|DFNA9 HGNC:2180|MIM:603196|Ensembl:ENSG00000100473|HPRD:04431|Vega:OTTHUMG00000029432 14 14q11.2-q13 coagulation factor C homolog, cochlin (Limulus polyphemus) protein-coding COCH coagulation factor C homolog, cochlin (Limulus polyphemus) O cochlin 20121230 -9606 1694 DFNA16 - - HGNC:2789|MIM:603964 2 2q24 deafness, autosomal dominant 16 unknown DFNA16 deafness, autosomal dominant 16 O - 20120622 -9606 1696 DFNA19 - - HGNC:2791 10 - deafness, autosomal dominant 19 unknown DFNA19 deafness, autosomal dominant 19 O - 20110215 -9606 1697 DFNB5 - - HGNC:2837|MIM:600792 14 14q12 deafness, autosomal recessive 5 unknown DFNB5 deafness, autosomal recessive 5 O - 20120622 -9606 1705 DFNB13 - - HGNC:2819|MIM:603098 7 7q34-q36 deafness, autosomal recessive 13 unknown DFNB13 deafness, autosomal recessive 13 O - 20120622 -9606 1706 DFNB14 - - HGNC:2820|MIM:603678 7 7q31 deafness, autosomal recessive 14 unknown DFNB14 deafness, autosomal recessive 14 O - 20120622 -9606 1709 DFNB17 - - HGNC:2823|MIM:603010 7 7q31 deafness, autosomal recessive 17 unknown DFNB17 deafness, autosomal recessive 17 O - 20120622 -9606 1712 DFNB19 - - HGNC:2825 18 18p11 deafness, autosomal recessive 19 unknown DFNB19 deafness, autosomal recessive 19 O - 20110215 -9606 1713 DFNB20 - - HGNC:2827|MIM:604060 11 11q25-qter deafness, autosomal recessive 20 unknown DFNB20 deafness, autosomal recessive 20 O - 20120622 -9606 1714 DGCR - CATCH22|DGS|VCF HGNC:2844|MIM:188400 22 22q11.21-q11.23 DiGeorge syndrome chromosome region other DGCR DiGeorge syndrome chromosome region O - 20121220 -9606 1716 DGUOK - MTDPS3|dGK HGNC:2858|MIM:601465|Ensembl:ENSG00000114956|HPRD:03273|Vega:OTTHUMG00000129819 2 2p13 deoxyguanosine kinase protein-coding DGUOK deoxyguanosine kinase O deoxyguanosine kinase, mitochondrial 20121230 -9606 1717 DHCR7 - SLOS HGNC:2860|MIM:602858|Ensembl:ENSG00000172893|HPRD:04174|Vega:OTTHUMG00000167346 11 11q13.4 7-dehydrocholesterol reductase protein-coding DHCR7 7-dehydrocholesterol reductase O 7-DHC reductase|delta-7-dehydrocholesterol reductase|putative sterol reductase SR-2|sterol delta-7-reductase 20121230 -9606 1718 DHCR24 - DCE|Nbla03646|SELADIN1|seladin-1 HGNC:2859|MIM:606418|Ensembl:ENSG00000116133|HPRD:05916|Vega:OTTHUMG00000009989 1 1p32.3 24-dehydrocholesterol reductase protein-coding DHCR24 24-dehydrocholesterol reductase O 3 beta-hydroxysterol delta 24-reductase|3-beta-hydroxysterol delta-24-reductase|delta(24)-sterol reductase|desmosterol-to-cholesterol enzyme|diminuto/dwarf1 homolog|seladin 1|selective AD indicator 1 20121230 -9606 1719 DHFR - DHFRP1|DYR HGNC:2861|MIM:126060|Ensembl:ENSG00000228716|HPRD:00519|Vega:OTTHUMG00000162529 5 5q11.2-q13.2 dihydrofolate reductase protein-coding DHFR dihydrofolate reductase O - 20121230 -9606 1720 LOC1720 - - - 2 2p12 dihydrofolate reductase pseudogene pseudo - - - - 20121230 -9606 1723 DHODH - DHOdehase|POADS|URA1 HGNC:2867|MIM:126064|Ensembl:ENSG00000102967|HPRD:00521|Vega:OTTHUMG00000178093 16 16q22 dihydroorotate dehydrogenase (quinone) protein-coding DHODH dihydroorotate dehydrogenase (quinone) O dihydroorotate dehydrogenase (quinone), mitochondrial|dihydroorotate oxidase|human complement of yeast URA1 20121230 -9606 1725 DHPS - DHS|DS|MIG13 HGNC:2869|MIM:600944|Ensembl:ENSG00000095059|HPRD:02969 19 19p13.2 deoxyhypusine synthase protein-coding DHPS deoxyhypusine synthase O migration-inducing gene 13 20121230 -9606 1727 CYB5R3 - B5R|DIA1 HGNC:2873|MIM:613213|Ensembl:ENSG00000100243|HPRD:08942|Vega:OTTHUMG00000150745 22 22q13.2 cytochrome b5 reductase 3 protein-coding CYB5R3 cytochrome b5 reductase 3 O NADH-cytochrome b5 reductase 3|NADH-cytochrome b5 reductase 3 membrane-bound form|NADH-cytochrome b5 reductase 3 soluble form|diaphorase-1 20121230 -9606 1728 NQO1 - DHQU|DIA4|DTD|NMOR1|NMORI|QR1 HGNC:2874|MIM:125860|Ensembl:ENSG00000181019|HPRD:00518|Vega:OTTHUMG00000137575 16 16q22.1 NAD(P)H dehydrogenase, quinone 1 protein-coding NQO1 NAD(P)H dehydrogenase, quinone 1 O DT-diaphorase|NAD(P)H dehydrogenase [quinone] 1|NAD(P)H:Quinone acceptor oxidoreductase type 1|NAD(P)H:menadione oxidoreductase 1|NAD(P)H:quinone oxidoreductase 1|NAD(P)H:quinone oxireductase|azoreductase|diaphorase (NADH/NADPH) (cytochrome b-5 reductase)|diaphorase-4|dioxin-inducible 1|menadione reductase|phylloquinone reductase|quinone reductase 1 20121230 -9606 1729 DIAPH1 - DFNA1|DIA1|DRF1|LFHL1|hDIA1 HGNC:2876|MIM:602121|Ensembl:ENSG00000131504|HPRD:03670|Vega:OTTHUMG00000149893 5 5q31 diaphanous homolog 1 (Drosophila) protein-coding DIAPH1 diaphanous homolog 1 (Drosophila) O diaphanous-related formin 1|diaphanous-related formin-1|protein diaphanous homolog 1 20121230 -9606 1730 DIAPH2 RP11-212B22.1 DIA|DIA2|DRF2|POF|POF2 HGNC:2877|MIM:300108|Ensembl:ENSG00000147202|HPRD:02117|Vega:OTTHUMG00000022689 X Xq21.33 diaphanous homolog 2 (Drosophila) protein-coding DIAPH2 diaphanous homolog 2 (Drosophila) O diaphanous-related formin-2|diaphorase-2|protein diaphanous homolog 2 20121230 -9606 1731 SEPT1 - DIFF6|LARP|PNUTL3|SEP1 HGNC:2879|MIM:612897|Ensembl:ENSG00000180096|HPRD:15324|Vega:OTTHUMG00000176984 16 16p11.1 septin 1 protein-coding SEPT1 septin 1 O differentiation 6 (deoxyguanosine triphosphate triphosphohydrolase)|peanut-like protein 3|septin-1|serologically defined breast cancer antigen NY-BR-24 20121230 -9606 1732 DIH1 - HCD HGNC:2881|MIM:142340 15 15q26.1-q26.2 diaphragmatic hernia 1 unknown DIH1 diaphragmatic hernia 1 O - 20120622 -9606 1733 DIO1 - 5DI|TXDI1 HGNC:2883|MIM:147892|Ensembl:ENSG00000211452|HPRD:01002|Vega:OTTHUMG00000008435 1 1p33-p32 deiodinase, iodothyronine, type I protein-coding DIO1 deiodinase, iodothyronine, type I O DIOI|thyroxine deiodinase type I (selenoprotein)|type 1 DI|type I iodothyronine deiodinase|type-I 5'-deiodinase 20121230 -9606 1734 DIO2 - 5DII|D2|DIOII|SelY|TXDI2 HGNC:2884|MIM:601413|Ensembl:ENSG00000211448|HPRD:09027|Vega:OTTHUMG00000171443 14 14q24.2-q24.3 deiodinase, iodothyronine, type II protein-coding DIO2 deiodinase, iodothyronine, type II O thyroxine deiodinase, type II|type 2 DI|type 2 iodothyronine deiodinase|type II iodothyronine deiodinase|type-II 5'-deiodinase|type-II 5'deiodinase 20121230 -9606 1735 DIO3 - 5DIII|D3|DIOIII|TXDI3 HGNC:2885|MIM:601038|Ensembl:ENSG00000197406|Ensembl:ENSG00000258865|HPRD:11867|Vega:OTTHUMG00000160681 14 14q32 deiodinase, iodothyronine, type III protein-coding DIO3 deiodinase, iodothyronine, type III O iodothyronine deiodinase, placental type|thyroxine deiodinase type III (selenoprotein)|type 3 DI|type 3 iodothyronine selenodeiodinase|type III iodothyronine deiodinase|type-III 5' deiodinase|type-III 5'-deiodinase 20121230 -9606 1736 DKC1 - CBF5|DKC|DKCX|NAP57|NOLA4|XAP101 HGNC:2890|MIM:300126|Ensembl:ENSG00000130826|HPRD:02129|Vega:OTTHUMG00000024242 X Xq28 dyskeratosis congenita 1, dyskerin protein-coding DKC1 dyskeratosis congenita 1, dyskerin O CBF5 homolog|H/ACA ribonucleoprotein complex subunit 4|cbf5p homolog|nopp140-associated protein of 57 kDa|nucleolar protein NAP57|nucleolar protein family A member 4|snoRNP protein DKC1 20121230 -9606 1737 DLAT - DLTA|PDC-E2|PDCE2 HGNC:2896|MIM:608770|Ensembl:ENSG00000150768|HPRD:10578|Vega:OTTHUMG00000133751 11 11q23.1 dihydrolipoamide S-acetyltransferase protein-coding DLAT dihydrolipoamide S-acetyltransferase O 70 kDa mitochondrial autoantigen of primary biliary cirrhosis|E2 component of pyruvate dehydrogenase complex|M2 antigen complex 70 kDa subunit|PBC|dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex|dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex mitochondrial|dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial|pyruvate dehydrogenase complex component E2 20121230 -9606 1738 DLD tcag7.39 DLDH|E3|GCSL|LAD|PHE3 HGNC:2898|MIM:238331|Ensembl:ENSG00000091140|HPRD:02006|Vega:OTTHUMG00000154813 7 7q31-q32 dihydrolipoamide dehydrogenase protein-coding DLD dihydrolipoamide dehydrogenase O E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex|diaphorase|dihydrolipoyl dehydrogenase, mitochondrial|glycine cleavage system L protein|glycine cleavage system protein L|lipoamide dehydrogenase|lipoamide reductase|lipoyl dehydrogenase 20121230 -9606 1739 DLG1 - DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg HGNC:2900|MIM:601014|Ensembl:ENSG00000075711|HPRD:03007|Vega:OTTHUMG00000047972 3 3q29 discs, large homolog 1 (Drosophila) protein-coding DLG1 discs, large homolog 1 (Drosophila) O disks large homolog 1|presynaptic protein SAP97|synapse-associated protein 97 20121230 -9606 1740 DLG2 - PPP1R58|PSD-93|PSD93|chapsyn-110 HGNC:2901|MIM:603583|Ensembl:ENSG00000150672|HPRD:04663|HPRD:08220|Vega:OTTHUMG00000134309 11 11q14.1 discs, large homolog 2 (Drosophila) protein-coding DLG2 discs, large homolog 2 (Drosophila) O channel-associated protein of synapse-110|channel-associated protein of synapses, 110kDa|discs, large homolog 2, chapsyn-110|disks large homolog 2|postsynaptic density protein PSD-93|protein phosphatase 1, regulatory subunit 58 20121230 -9606 1741 DLG3 RP11-291O7.3 MRX|MRX90|NEDLG|SAP102|XLMR HGNC:2902|MIM:300189|Ensembl:ENSG00000082458|HPRD:02177|Vega:OTTHUMG00000021778 X Xq13.1 discs, large homolog 3 (Drosophila) protein-coding DLG3 discs, large homolog 3 (Drosophila) O disks large homolog 3|neuroendocrine-DLG|synapse-associated protein 102 20121230 -9606 1742 DLG4 - PSD95|SAP-90|SAP90 HGNC:2903|MIM:602887|Ensembl:ENSG00000132535|HPRD:04199|Vega:OTTHUMG00000134327 17 17p13.1 discs, large homolog 4 (Drosophila) protein-coding DLG4 discs, large homolog 4 (Drosophila) O Tax interaction protein 15|discs large homolog 4|disks large homolog 4|post-synaptic density protein 95|postsynaptic density protein 95|synapse-associated protein 90 20121230 -9606 1743 DLST - DLTS HGNC:2911|MIM:126063|Ensembl:ENSG00000119689|HPRD:00520|Vega:OTTHUMG00000171483 14 14q24.3 dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) protein-coding DLST dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) O E2K|OGDC-E2|dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 20121230 -9606 1744 DLSTP1 - DLSTP HGNC:2912 1 1p31 dihydrolipoamide S-succinyltransferase pseudogene 1 pseudo DLSTP1 dihydrolipoamide S-succinyltransferase pseudogene 1 O - 20121230 -9606 1745 DLX1 - - HGNC:2914|MIM:600029|Ensembl:ENSG00000144355|HPRD:08961|Vega:OTTHUMG00000073951 2 2q32 distal-less homeobox 1 protein-coding DLX1 distal-less homeobox 1 O distal-less homeo box 1|homeobox protein DLX-1 20121230 -9606 1746 DLX2 - TES-1|TES1 HGNC:2915|MIM:126255|Ensembl:ENSG00000115844|HPRD:00527|Vega:OTTHUMG00000132276 2 2q32 distal-less homeobox 2 protein-coding DLX2 distal-less homeobox 2 O distal-less homeo box 2|homeobox protein DLX-2 20121230 -9606 1747 DLX3 - AI4|TDO HGNC:2916|MIM:600525|Ensembl:ENSG00000064195|HPRD:02752|Vega:OTTHUMG00000161892 17 17q21 distal-less homeobox 3 protein-coding DLX3 distal-less homeobox 3 O homeobox protein DLX-3 20121230 -9606 1748 DLX4 - BP1|DLX7|DLX8|DLX9 HGNC:2917|MIM:601911|Ensembl:ENSG00000108813|HPRD:03553|Vega:OTTHUMG00000161839 17 17q21.33 distal-less homeobox 4 protein-coding DLX4 distal-less homeobox 4 O beta protein 1|distal-less homeo box 7|distal-less homeo box 9|homeobox protein DLX-4|homeobox protein DLX-7|homeobox protein DLX-8 20121230 -9606 1749 DLX5 - SHFM1D HGNC:2918|MIM:600028|Ensembl:ENSG00000105880|HPRD:02492|Vega:OTTHUMG00000154200 7 7q22 distal-less homeobox 5 protein-coding DLX5 distal-less homeobox 5 O distal-less homeo box 5|homeobox protein DLX-5|split hand/foot malformation type 1 with sensorineural hearing loss 20121230 -9606 1750 DLX6 - - HGNC:2919|MIM:600030|Ensembl:ENSG00000006377|HPRD:02493|Vega:OTTHUMG00000154201 7 7q22 distal-less homeobox 6 protein-coding DLX6 distal-less homeobox 6 O distal-less homeo box 6|homeobox protein DLX-6 20121230 -9606 1755 DMBT1 RP11-481L19.1 GP340|muclin HGNC:2926|MIM:601969|Ensembl:ENSG00000187908|HPRD:03575|Vega:OTTHUMG00000019185 10 10q26.13 deleted in malignant brain tumors 1 protein-coding DMBT1 deleted in malignant brain tumors 1 O SAG|deleted in malignant brain tumors 1 protein|glycoprotein 340|gp-340|hensin|salivary agglutinin|surfactant pulmonary-associated D-binding protein 20121230 -9606 1756 DMD GS1-19O24.1 BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272 HGNC:2928|MIM:300377|Ensembl:ENSG00000198947|HPRD:02303|Vega:OTTHUMG00000021336 X Xp21.2 dystrophin protein-coding DMD dystrophin O - 20121230 -9606 1757 SARDH RP11-317B10.2 BPR-2|DMGDHL1|SAR|SARD|SDH HGNC:10536|MIM:604455|Ensembl:ENSG00000123453|HPRD:06831|Vega:OTTHUMG00000020879 9 9q33-q34 sarcosine dehydrogenase protein-coding SARDH sarcosine dehydrogenase O dimethylglycine dehydrogenase-like 1|sarcosine dehydrogenase, mitochondrial 20121230 -9606 1758 DMP1 - ARHP|ARHR|DMP-1 HGNC:2932|MIM:600980|Ensembl:ENSG00000152592|HPRD:02989|Vega:OTTHUMG00000130598 4 4q21 dentin matrix acidic phosphoprotein 1 protein-coding DMP1 dentin matrix acidic phosphoprotein 1 O dentin matrix protein 1 20121230 -9606 1759 DNM1 - DNM HGNC:2972|MIM:602377|Ensembl:ENSG00000106976|HPRD:03851|Vega:OTTHUMG00000020733 9 9q34 dynamin 1 protein-coding DNM1 dynamin 1 O dynamin-1 20121230 -9606 1760 DMPK - DM|DM1|DM1PK|DMK|MDPK|MT-PK HGNC:2933|MIM:605377|Ensembl:ENSG00000104936|HPRD:05645|Vega:OTTHUMG00000182334 19 19q13.3 dystrophia myotonica-protein kinase protein-coding DMPK dystrophia myotonica-protein kinase O DM protein kinase|DM-kinase|DM1 protein kinase|myotonic dystrophy associated protein kinase|myotonic dystrophy protein kinase|myotonin protein kinase A|myotonin-protein kinase|thymopoietin homolog 20121230 -9606 1761 DMRT1 - DMT1 HGNC:2934|MIM:602424|Ensembl:ENSG00000137090|HPRD:03885|Vega:OTTHUMG00000019435 9 9p24.3 doublesex and mab-3 related transcription factor 1 protein-coding DMRT1 doublesex and mab-3 related transcription factor 1 O DM domain expressed in testis 1|DM domain expressed in testis protein 1|doublesex- and mab-3-related transcription factor 1 20121230 -9606 1762 DMWD - D19S593E|DMR-N9|DMRN9|gene59 HGNC:2936|MIM:609857|Ensembl:ENSG00000185800|Vega:OTTHUMG00000169044 19 19q13.3 dystrophia myotonica, WD repeat containing protein-coding DMWD dystrophia myotonica, WD repeat containing O dystrophia myotonica WD repeat-containing protein|dystrophia myotonica-containing WD repeat motif protein|protein 59 20121230 -9606 1763 DNA2 RP11-9E13.1 DNA2L|hDNA2 HGNC:2939|MIM:601810|Ensembl:ENSG00000138346|Vega:OTTHUMG00000018352 10 10q21.3-q22.1 DNA replication helicase 2 homolog (yeast) protein-coding DNA2 DNA replication helicase 2 homolog (yeast) O DNA replication ATP-dependent helicase-like homolog|DNA replication ATP-dependent helicase/nuclease DNA2|DNA2-like helicase 20121230 -9606 1767 DNAH5 - CILD3|DNAHC5|HL1|KTGNR|PCD HGNC:2950|MIM:603335|Ensembl:ENSG00000039139|HPRD:04514|Vega:OTTHUMG00000090533 5 5p15.2 dynein, axonemal, heavy chain 5 protein-coding DNAH5 dynein, axonemal, heavy chain 5 O axonemal beta dynein heavy chain 5|ciliary dynein heavy chain 5|dynein heavy chain 5, axonemal|dynein, axonemal, heavy polypeptide 5 20121230 -9606 1768 DNAH6 hCG_1789665 DNHL1|Dnahc6|HL-2|HL2 HGNC:2951|MIM:603336|Ensembl:ENSG00000115423|Vega:OTTHUMG00000128957 2 2p11.2 dynein, axonemal, heavy chain 6 protein-coding DNAH6 dynein, axonemal, heavy chain 6 O axonemal beta dynein heavy chain 6|ciliary dynein heavy chain 6|dynein heavy chain 6, axonemal|dynein heavy chain-like 1|dynein, axonemal, heavy polypeptide 6 20121230 -9606 1769 DNAH8 RP1-202I21.7 ATPase|hdhc9 HGNC:2952|MIM:603337|Ensembl:ENSG00000124721|HPRD:04515|Vega:OTTHUMG00000016253 6 6p21.2 dynein, axonemal, heavy chain 8 protein-coding DNAH8 dynein, axonemal, heavy chain 8 O axonemal beta dynein heavy chain 8|ciliary dynein heavy chain 8|dynein heavy chain 8, axonemal|dynein, axonemal, heavy polypeptide 8 20121230 -9606 1770 DNAH9 - DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 HGNC:2953|MIM:603330|Ensembl:ENSG00000007174|HPRD:04511|Vega:OTTHUMG00000130383 17 17p12 dynein, axonemal, heavy chain 9 protein-coding DNAH9 dynein, axonemal, heavy chain 9 O DNAH9 variant protein|axonemal beta dynein heavy chain 9|ciliary dynein heavy chain 9|dynein heavy chain 9, axonemal|dynein, axonemal, heavy polypeptide 9 20121230 -9606 1773 DNASE1 - DNL1|DRNI HGNC:2956|MIM:125505|Ensembl:ENSG00000213918|HPRD:00509|Vega:OTTHUMG00000129426 16 16p13.3 deoxyribonuclease I protein-coding DNASE1 deoxyribonuclease I O DNase I, lysosomal|Dornase alfa|deoxyribonuclease-1|human urine deoxyribonuclease I 20121230 -9606 1774 DNASE1L1 XX-FW83563B9.2 DNAS1L1|DNASEX|DNL1L|G4.8|XIB HGNC:2957|MIM:300081|Ensembl:ENSG00000013563|HPRD:02096|Vega:OTTHUMG00000033188 X Xq28 deoxyribonuclease I-like 1 protein-coding DNASE1L1 deoxyribonuclease I-like 1 O DNase I-like 1|DNase I-like, muscle-specific|DNase X|deoxyribonuclease-1-like 1 20121230 -9606 1775 DNASE1L2 - DNAS1L2 HGNC:2958|MIM:602622|Ensembl:ENSG00000167968|HPRD:04018|Vega:OTTHUMG00000177086 16 16p13.3 deoxyribonuclease I-like 2 protein-coding DNASE1L2 deoxyribonuclease I-like 2 O DNase I homolog protein DHP1|DNase I-like 2|deoxyribonuclease-1-like 2 20121230 -9606 1776 DNASE1L3 - DHP2|DNAS1L3|LSD|SLEB16 HGNC:2959|MIM:602244|Ensembl:ENSG00000163687|HPRD:03764|Vega:OTTHUMG00000159153 3 3p14.3 deoxyribonuclease I-like 3 protein-coding DNASE1L3 deoxyribonuclease I-like 3 O DNase I homolog protein 2|DNase I homolog protein DHP2|DNase I-like 3|DNase gamma|LS-DNase|Liver and spleen DNase|deoxyribonuclease I-like III|deoxyribonuclease gamma 20121230 -9606 1777 DNASE2 - DNASE2A|DNL|DNL2 HGNC:2960|MIM:126350|Ensembl:ENSG00000105612|HPRD:00531|Vega:OTTHUMG00000180535 19 19p13.2 deoxyribonuclease II, lysosomal protein-coding DNASE2 deoxyribonuclease II, lysosomal O DNase II alpha|DNase II, lysosomal|R31240_2|acid DNase|deoxyribonuclease II alpha|deoxyribonuclease-2-alpha|lysosomal DNase II 20121230 -9606 1778 DYNC1H1 - CMT20|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|MRD13|SMALED|p22 HGNC:2961|MIM:600112|Ensembl:ENSG00000197102|HPRD:02524|Vega:OTTHUMG00000171644 14 14q32 dynein, cytoplasmic 1, heavy chain 1 protein-coding DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 O cytoplasmic dynein 1 heavy chain 1|cytoplasmic dynein heavy chain 1|dynein heavy chain, cytosolic|dynein, cytoplasmic, heavy polypeptide 1 20121230 -9606 1780 DYNC1I1 - DNCI1|DNCIC1 HGNC:2963|MIM:603772|Ensembl:ENSG00000158560|HPRD:04798|Vega:OTTHUMG00000153983 7 7q21.3-q22.1 dynein, cytoplasmic 1, intermediate chain 1 protein-coding DYNC1I1 dynein, cytoplasmic 1, intermediate chain 1 O DH IC-1|cytoplasmic dynein 1 intermediate chain 1|cytoplasmic dynein intermediate chain 1|dynein intermediate chain 1, cytosolic|dynein, cytoplasmic, intermediate polypeptide 1 20121230 -9606 1781 DYNC1I2 - DNCI2|IC2 HGNC:2964|MIM:603331|Ensembl:ENSG00000077380|HPRD:04512|Vega:OTTHUMG00000154061 2 2q31.1 dynein, cytoplasmic 1, intermediate chain 2 protein-coding DYNC1I2 dynein, cytoplasmic 1, intermediate chain 2 O DH IC-2|cytoplasmic dynein 1 intermediate chain 2|dynein intermediate chain 2, cytosolic|dynein, cytoplasmic, intermediate polypeptide 2 20121230 -9606 1783 DYNC1LI2 - DNCLI2|LIC2 HGNC:2966|MIM:611406|Ensembl:ENSG00000135720|HPRD:09923|Vega:OTTHUMG00000137523 16 16q22.1 dynein, cytoplasmic 1, light intermediate chain 2 protein-coding DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2 O LIC-2|LIC53/55|cytoplasmic dynein 1 light intermediate chain 2|dynein light intermediate chain 2, cytosolic|dynein, cytoplasmic, light intermediate polypeptide 2 20121230 -9606 1784 DNCM - cmDNA MIM:126330 9 9q12 DNA associated with cytoplasmic membrane other - - - - 20100624 -9606 1785 DNM2 - CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII HGNC:2974|MIM:602378|Ensembl:ENSG00000079805|HPRD:03852|Vega:OTTHUMG00000180694 19 19p13.2 dynamin 2 protein-coding DNM2 dynamin 2 O dynamin II|dynamin-2 20121230 -9606 1786 DNMT1 - AIM|CXXC9|DNMT|HSN1E|MCMT HGNC:2976|MIM:126375|Ensembl:ENSG00000130816|HPRD:00532|Vega:OTTHUMG00000180397 19 19p13.2 DNA (cytosine-5-)-methyltransferase 1 protein-coding DNMT1 DNA (cytosine-5-)-methyltransferase 1 O CXXC finger protein 9|CXXC-type zinc finger protein 9|DNA (cytosine-5)-methyltransferase 1|DNA MTase HsaI|DNA methyltransferase 1|DNA methyltransferase HsaI|m.HsaI 20121230 -9606 1787 TRDMT1 RP11-406H21.1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 HGNC:2977|MIM:602478|Ensembl:ENSG00000107614|HPRD:16001|Vega:OTTHUMG00000017745 10 10p15.1 tRNA aspartic acid methyltransferase 1 protein-coding TRDMT1 tRNA aspartic acid methyltransferase 1 O DNA (cytosine-5)-methyltransferase-like protein 2|DNA MTase homolog HsaIIP|DNA methyltransferase-2|tRNA (cytosine(38)-C(5))-methyltransferase|tRNA (cytosine-5-)-methyltransferase 20121230 -9606 1788 DNMT3A - DNMT3A2|M.HsaIIIA HGNC:2978|MIM:602769|Ensembl:ENSG00000119772|HPRD:04141|Vega:OTTHUMG00000094777 2 2p23 DNA (cytosine-5-)-methyltransferase 3 alpha protein-coding DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha O DNA (cytosine-5)-methyltransferase 3A|DNA MTase HsaIIIA|DNA cytosine methyltransferase 3A2 20121230 -9606 1789 DNMT3B RP5-1085F17.2 ICF|ICF1|M.HsaIIIB HGNC:2979|MIM:602900|Ensembl:ENSG00000088305|HPRD:04209|Vega:OTTHUMG00000032226 20 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta protein-coding DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta O DNA (cytosine-5)-methyltransferase 3B|DNA MTase HsaIIIB|DNA methyltransferase HsaIIIB 20121230 -9606 1791 DNTT - TDT HGNC:2983|MIM:187410|Ensembl:ENSG00000107447|HPRD:08925|Vega:OTTHUMG00000018832 10 10q23-q24 deoxynucleotidyltransferase, terminal protein-coding DNTT deoxynucleotidyltransferase, terminal O DNA nucleotidylexotransferase|nucleosidetriphosphate:DNA deoxynucleotidylexotransferase|terminal addition enzyme|terminal deoxynucleotidyltransferase|terminal deoxyribonucleotidyltransferase|terminal transferase 20121230 -9606 1793 DOCK1 RP11-82L9.1 DOCK180|ced5 HGNC:2987|MIM:601403|Ensembl:ENSG00000150760|HPRD:03240|Vega:OTTHUMG00000019249 10 10q26.13-q26.3 dedicator of cytokinesis 1 protein-coding DOCK1 dedicator of cytokinesis 1 O 180 kDa protein downstream of CRK|DOwnstream of CrK|dedicator of cyto-kinesis 1|dedicator of cytokinesis protein 1 20121230 -9606 1794 DOCK2 - - HGNC:2988|MIM:603122|Ensembl:ENSG00000134516|HPRD:09121|Vega:OTTHUMG00000130437 5 5q35.1 dedicator of cytokinesis 2 protein-coding DOCK2 dedicator of cytokinesis 2 O dedicator of cyto-kinesis 2|dedicator of cytokinesis protein 2 20121230 -9606 1795 DOCK3 - MOCA|PBP HGNC:2989|MIM:603123|Ensembl:ENSG00000088538|HPRD:10341|Vega:OTTHUMG00000156892 3 3p21.2 dedicator of cytokinesis 3 protein-coding DOCK3 dedicator of cytokinesis 3 O dedicator of cytokinesis protein 3|modifier of cell adhesion|presenilin-binding protein 20121230 -9606 1796 DOK1 - P62DOK HGNC:2990|MIM:602919|Ensembl:ENSG00000115325|HPRD:04228|Vega:OTTHUMG00000129956 2 2p13 docking protein 1, 62kDa (downstream of tyrosine kinase 1) protein-coding DOK1 docking protein 1, 62kDa (downstream of tyrosine kinase 1) O Downstream of tyrosine kinase 1|docking protein 1|docking protein 1 (downstream of tyrosine kinase 1)|p62(dok)|pp62 20121230 -9606 1797 DOM3Z DAMC-178C20.2 DOM3L|NG6|RAI1 HGNC:2992|MIM:605996|Ensembl:ENSG00000204348|HPRD:16186|Vega:OTTHUMG00000031272 6 6p21.3 dom-3 homolog Z (C. elegans) protein-coding DOM3Z dom-3 homolog Z (C. elegans) O protein Dom3Z 20121230 -9606 1798 DPAGT1 - ALG7|CDG-Ij|CDG1J|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT HGNC:2995|MIM:191350|Ensembl:ENSG00000172269|HPRD:01879|Vega:OTTHUMG00000153533 11 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) protein-coding DPAGT1 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) O GlcNAc-1-P transferase|N-acetylglucosamine-1-phosphate transferase|UDP-GlcNAc:dolichyl-phosphate N-acetylglucosaminephosphotransferase|UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P tra|dolichyl-phosphate alpha-N-acetylglucosaminyltransferase 20121230 -9606 1800 DPEP1 - MBD1|MDP|RDP HGNC:3002|MIM:179780|Ensembl:ENSG00000015413|HPRD:01563|Vega:OTTHUMG00000138052 16 16q24.3 dipeptidase 1 (renal) protein-coding DPEP1 dipeptidase 1 (renal) O dehydropeptidase-I|dipeptidase 1|hRDP|microsomal dipeptidase|renal dipeptidase 20121230 -9606 1801 DPH1 - DPH2L|DPH2L1|OVCA1 HGNC:3003|MIM:603527|Ensembl:ENSG00000108963|HPRD:04634|Vega:OTTHUMG00000177724 17 17p13.3 DPH1 homolog (S. cerevisiae) protein-coding DPH1 DPH1 homolog (S. cerevisiae) O DPH-like 1|DPH2-like 1|candidate tumor suppressor in ovarian cancer 1|diphthamide biosynthesis protein 1|diphthamide biosynthesis protein 2 homolog-like 1|diptheria toxin resistance protein required for diphthamide biosynthesis (Saccharomyces)-like 1|diptheria toxin resistance protein required for diphthamide biosynthesis-like 1|ovarian cancer-associated gene 1 protein|ovarian tumor suppressor candidate 1 20121230 -9606 1802 DPH2 - DPH2L2 HGNC:3004|MIM:603456|Ensembl:ENSG00000132768|HPRD:16023|Vega:OTTHUMG00000008295 1 1p34 DPH2 homolog (S. cerevisiae) protein-coding DPH2 DPH2 homolog (S. cerevisiae) O DPH2-like 2|diphthamide biosynthesis protein 2|diphthamide biosynthesis protein 2 homolog-like 2|diphthamide biosynthesis-like protein 2|diptheria toxin resistance protein required for diphthamide biosynthesis-like 2 20121230 -9606 1803 DPP4 - ADABP|ADCP2|CD26|DPPIV|TP103 HGNC:3009|MIM:102720|Ensembl:ENSG00000197635|HPRD:02187|Vega:OTTHUMG00000132056 2 2q24.3 dipeptidyl-peptidase 4 protein-coding DPP4 dipeptidyl-peptidase 4 O ADCP-2|DPP IV|T-cell activation antigen CD26|adenosine deaminase complexing protein 2|dipeptidyl peptidase 4|dipeptidyl peptidase IV|dipeptidylpeptidase 4|dipeptidylpeptidase IV (CD26, adenosine deaminase complexing protein 2) 20121230 -9606 1804 DPP6 - DPPX|VF2 HGNC:3010|MIM:126141|Ensembl:ENSG00000130226|HPRD:00525|Vega:OTTHUMG00000151511 7 7q36.2 dipeptidyl-peptidase 6 protein-coding DPP6 dipeptidyl-peptidase 6 O DPP VI|dipeptidyl aminopeptidase IV-related protein|dipeptidyl aminopeptidase-like protein 6|dipeptidyl aminopeptidase-related protein|dipeptidyl peptidase 6|dipeptidyl peptidase IV-like protein|dipeptidyl peptidase IV-related protein|dipeptidyl peptidase VI|dipeptidylpeptidase 6|dipeptidylpeptidase VI 20121230 -9606 1805 DPT - TRAMP HGNC:3011|MIM:125597|Ensembl:ENSG00000143196|HPRD:00510|Vega:OTTHUMG00000034554 1 1q12-q23 dermatopontin protein-coding DPT dermatopontin O tyrosine-rich acidic matrix protein 20121230 -9606 1806 DPYD - DHP|DHPDHASE|DPD HGNC:3012|MIM:612779|Ensembl:ENSG00000188641|HPRD:02036|Vega:OTTHUMG00000039683 1 1p22 dihydropyrimidine dehydrogenase protein-coding DPYD dihydropyrimidine dehydrogenase O dihydropyrimidine dehydrogenase [NADP(+)]|dihydrothymine dehydrogenase|dihydrouracil dehydrogenase 20121230 -9606 1807 DPYS - DHP|DHPase HGNC:3013|MIM:613326|Ensembl:ENSG00000147647|HPRD:01960|Vega:OTTHUMG00000164891 8 8q22 dihydropyrimidinase protein-coding DPYS dihydropyrimidinase O dihydropyrimidine amidohydrolase|hydantoinase 20121230 -9606 1808 DPYSL2 - CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 HGNC:3014|MIM:602463|Ensembl:ENSG00000092964|HPRD:03914|Vega:OTTHUMG00000099439 8 8p22-p21 dihydropyrimidinase-like 2 protein-coding DPYSL2 dihydropyrimidinase-like 2 O collapsin response mediator protein hCRMP-2|dihydropyrimidinase-related protein 2|unc-33-like phosphoprotein 2 20121230 -9606 1809 DPYSL3 - CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 HGNC:3015|MIM:601168|Ensembl:ENSG00000113657|HPRD:03104|Vega:OTTHUMG00000163437 5 5q32 dihydropyrimidinase-like 3 protein-coding DPYSL3 dihydropyrimidinase-like 3 O collapsin response mediator protein 4 long|dihydropyrimidinase-related protein 3|unc-33-like phosphoprotein 1 20121230 -9606 1810 DR1 - NC2|NC2-BETA HGNC:3017|MIM:601482|Ensembl:ENSG00000117505|HPRD:03284|Vega:OTTHUMG00000010862 1 1p22.1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) protein-coding DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) O TATA-binding protein-associated phosphoprotein|negative cofactor 2-beta|protein Dr1 20121230 -9606 1811 SLC26A3 - CLD|DRA HGNC:3018|MIM:126650|Ensembl:ENSG00000091138|HPRD:00544|Vega:OTTHUMG00000154812 7 7q31 solute carrier family 26, member 3 protein-coding SLC26A3 solute carrier family 26, member 3 O chloride anion exchanger|down-regulated in adenoma protein 20121230 -9606 1812 DRD1 - DADR|DRD1A HGNC:3020|MIM:126449|Ensembl:ENSG00000184845|HPRD:00538 5 5q35.1 dopamine receptor D1 protein-coding DRD1 dopamine receptor D1 O D(1A) dopamine receptor|dopamine D1 receptor 20121230 -9606 1813 DRD2 - D2DR|D2R HGNC:3023|MIM:126450|Ensembl:ENSG00000149295|HPRD:00539|Vega:OTTHUMG00000167717 11 11q23 dopamine receptor D2 protein-coding DRD2 dopamine receptor D2 O D(2) dopamine receptor|dopamine D2 receptor|dopamine receptor D2 isoform|seven transmembrane helix receptor 20121230 -9606 1814 DRD3 - D3DR|ETM1|FET1 HGNC:3024|MIM:126451|Ensembl:ENSG00000151577|HPRD:00540|Vega:OTTHUMG00000159334 3 3q13.3 dopamine receptor D3 protein-coding DRD3 dopamine receptor D3 O D(3) dopamine receptor|dopamine D3 receptor|essential tremor 1 20121230 -9606 1815 DRD4 - D4DR HGNC:3025|MIM:126452|Ensembl:ENSG00000069696|HPRD:00541|Vega:OTTHUMG00000133312 11 11p15.5 dopamine receptor D4 protein-coding DRD4 dopamine receptor D4 O D(2C) dopamine receptor|D(4) dopamine receptor|dopamine D4 receptor|seven transmembrane helix receptor 20121230 -9606 1816 DRD5 - DBDR|DRD1B|DRD1L2 HGNC:3026|MIM:126453|Ensembl:ENSG00000169676|HPRD:00542|Vega:OTTHUMG00000128489 4 4p16.1 dopamine receptor D5 protein-coding DRD5 dopamine receptor D5 O D(1B) dopamine receptor|D1beta dopamine receptor|d(5) dopamine receptor|dopamine D5 receptor|dopamine receptor D1B 20121230 -9606 1817 DRD5P1 - - HGNC:3027 2 2p11.1 dopamine receptor D5 pseudogene 1 pseudo DRD5P1 dopamine receptor D5 pseudogene 1 O - 20121230 -9606 1818 DRD5P2 - - HGNC:3028 1 1q21.1 dopamine receptor D5 pseudogene 2 pseudo DRD5P2 dopamine receptor D5 pseudogene 2 O - 20121230 -9606 1819 DRG2 - - HGNC:3030|MIM:602986|Ensembl:ENSG00000108591|HPRD:04286|Vega:OTTHUMG00000059399 17 17p11.2 developmentally regulated GTP binding protein 2 protein-coding DRG2 developmentally regulated GTP binding protein 2 O developmentally-regulated GTP-binding protein 2 20121230 -9606 1820 ARID3A - BRIGHT|DRIL1|DRIL3|E2FBP1 HGNC:3031|MIM:603265|Ensembl:ENSG00000116017|HPRD:10343|Vega:OTTHUMG00000182018 19 19p13.3 AT rich interactive domain 3A (BRIGHT-like) protein-coding ARID3A AT rich interactive domain 3A (BRIGHT-like) O ARID domain-containing 3A|ARID domain-containing protein 3A|AT rich interactive domain 3A (BRIGHT- like) protein|AT-rich interactive domain-containing protein 3A|B-cell regulator of IgH transcription|E2F-binding protein 1|dead ringer-like 1|dead ringer-like protein 1 20121230 -9606 1821 DRP2 GHc-521F8.2 - HGNC:3032|MIM:300052|Ensembl:ENSG00000102385|HPRD:02083|Vega:OTTHUMG00000022020 X Xq22 dystrophin related protein 2 protein-coding DRP2 dystrophin related protein 2 O DRP-2|dystrophin-related protein 2 20121230 -9606 1822 ATN1 - B37|D12S755E|DRPLA|HRS|NOD HGNC:3033|MIM:607462|Ensembl:ENSG00000111676|HPRD:06311|Vega:OTTHUMG00000169015 12 12p13.31 atrophin 1 protein-coding ATN1 atrophin 1 O atrophin-1|dentatorubral-pallidoluysian atrophy protein 20121230 -9606 1823 DSC1 - CDHF1|DG2/DG3 HGNC:3035|MIM:125643|Ensembl:ENSG00000134765|HPRD:00511|Vega:OTTHUMG00000131982 18 18q12.1 desmocollin 1 protein-coding DSC1 desmocollin 1 O cadherin family member 1|desmocollin-1|desmosomal glycoprotein 2/3 20121230 -9606 1824 DSC2 - ARVD11|CDHF2|DG2|DGII/III|DSC3 HGNC:3036|MIM:125645|Ensembl:ENSG00000134755|HPRD:00512|Vega:OTTHUMG00000131981 18 18q12.1 desmocollin 2 protein-coding DSC2 desmocollin 2 O cadherin family member 2|desmocollin-2|desmosomal glycoprotein II/III 20121230 -9606 1825 DSC3 - CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP HGNC:3037|MIM:600271|Ensembl:ENSG00000134762|HPRD:02604|Vega:OTTHUMG00000179622 18 18q12.1 desmocollin 3 protein-coding DSC3 desmocollin 3 O cadherin family member 3|desmocollin-3|desmocollin-4 20121230 -9606 1826 DSCAM - CHD2-42|CHD2-52 HGNC:3039|MIM:602523|Ensembl:ENSG00000171587|HPRD:03953|Vega:OTTHUMG00000086732 21 21q22.2 Down syndrome cell adhesion molecule protein-coding DSCAM Down syndrome cell adhesion molecule O CHD2|human CHD2-52 down syndrome cell adhesion molecule 20121230 -9606 1827 RCAN1 - ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 HGNC:3040|MIM:602917|Ensembl:ENSG00000159200|HPRD:04226|Vega:OTTHUMG00000086235 21 21q22.12 regulator of calcineurin 1 protein-coding RCAN1 regulator of calcineurin 1 O Down syndrome candidate region 1|Down syndrome critical region gene 1|calcipressin-1|calcium and oxidant-inducible mRNA|down syndrome critical region protein 1|modulatory calcineurin-interacting protein 1|myocyte-enriched calcineurin-interacting protein 1|near DSCR proline-rich protein 20121230 -9606 1828 DSG1 - CDHF4|DG1|DSG|PPKS1|SPPK1 HGNC:3048|MIM:125670|Ensembl:ENSG00000134760|HPRD:00515|Vega:OTTHUMG00000131983 18 18q12.1 desmoglein 1 protein-coding DSG1 desmoglein 1 O DGI|cadherin family member 4|desmoglein-1|desmosomal glycoprotein 1|pemphigus foliaceus antigen 20121230 -9606 1829 DSG2 - ARVC10|ARVD10|CDHF5|CMD1BB|HDGC HGNC:3049|MIM:125671|Ensembl:ENSG00000046604|HPRD:00516|Vega:OTTHUMG00000179649 18 18q12.1 desmoglein 2 protein-coding DSG2 desmoglein 2 O HDGC|cadherin family member 5|desmoglein-2 20121230 -9606 1830 DSG3 - CDHF6|PVA HGNC:3050|MIM:169615|Ensembl:ENSG00000134757|HPRD:01355|Vega:OTTHUMG00000131985 18 18q12.1 desmoglein 3 protein-coding DSG3 desmoglein 3 O 130 kDa pemphigus vulgaris antigen|130-kD pemphigus vulgaris antigen|cadherin family member 6|desmoglein-3|pemphigus vulgaris antigen 20121230 -9606 1831 TSC22D3 RP13-364K23.1 DIP|DSIPI|GILZ|TSC-22R|hDIP HGNC:3051|MIM:300506|Ensembl:ENSG00000157514|HPRD:04266|Vega:OTTHUMG00000022168 X Xq22.3 TSC22 domain family, member 3 protein-coding TSC22D3 TSC22 domain family, member 3 O DSIP-immunoreactive leucine zipper protein|DSIP-immunoreactive peptide|TSC-22 related protein|TSC-22-like protein|TSC-22-related protein|TSC22 domain family protein 3|delta sleep inducing peptide, immunoreactor|delta sleep-inducing peptide immunoreactor|glucocorticoid-induced leucine zipper protein 20121230 -9606 1832 DSP - DP|DPI|DPII HGNC:3052|MIM:125647|Ensembl:ENSG00000096696|HPRD:00513|Vega:OTTHUMG00000014212 6 6p24 desmoplakin protein-coding DSP desmoplakin O 250/210 kDa paraneoplastic pemphigus antigen|desmoplakin I|desmoplakin II 20121230 -9606 1833 EPYC - DSPG3|PGLB|Pg-Lb|SLRR3B HGNC:3053|MIM:601657|Ensembl:ENSG00000083782|HPRD:15988|Vega:OTTHUMG00000170072 12 12q21 epiphycan protein-coding EPYC epiphycan O dermatan sulfate proteoglycan 3|epiphycan proteoglycan|proteoglycan-lb|small chondroitin/dermatan sulfate proteoglycan 20121230 -9606 1834 DSPP - DFNA39|DGI1|DMP3|DPP|DSP|DTDP2 HGNC:3054|MIM:125485|Ensembl:ENSG00000152591|HPRD:00508|Vega:OTTHUMG00000161061 4 4q21.3 dentin sialophosphoprotein protein-coding DSPP dentin sialophosphoprotein O dentin phosphophoryn|dentin phosphoprotein|dentin phosphoryn|dentin sialoprotein 20121230 -9606 1836 SLC26A2 - D5S1708|DTD|DTDST|EDM4|MST153|MSTP157 HGNC:10994|MIM:606718|Ensembl:ENSG00000155850|HPRD:05990|Vega:OTTHUMG00000130054 5 5q31-q34 solute carrier family 26 (sulfate transporter), member 2 protein-coding SLC26A2 solute carrier family 26 (sulfate transporter), member 2 O diastrophic dysplasia protein|sulfate anion transporter 1|sulfate transporter 20121230 -9606 1837 DTNA - D18S892E|DRP3|DTN|DTN-A|LVNC1 HGNC:3057|MIM:601239|Ensembl:ENSG00000134769|HPRD:03141|Vega:OTTHUMG00000132309 18 18q12 dystrobrevin, alpha protein-coding DTNA dystrobrevin, alpha O dystrobrevin alpha|dystrophin-related protein 3 20121230 -9606 1838 DTNB - - HGNC:3058|MIM:602415|Ensembl:ENSG00000138101|HPRD:09091|Vega:OTTHUMG00000152129 2 2p24 dystrobrevin, beta protein-coding DTNB dystrobrevin, beta O DTN-B|beta-dystrobrevin|dystrobrevin beta 20121230 -9606 1839 HBEGF - DTR|DTS|DTSF|HEGFL HGNC:3059|MIM:126150|Ensembl:ENSG00000113070|HPRD:00526|Vega:OTTHUMG00000129496 5 5q23 heparin-binding EGF-like growth factor protein-coding HBEGF heparin-binding EGF-like growth factor O diphtheria toxin receptor (heparin-binding EGF-like growth factor)|diphtheria toxin receptor (heparin-binding epidermal growth factor-like growth factor)|heparin-binding epidermal growth factor|proheparin-binding EGF-like growth factor 20121230 -9606 1840 DTX1 - hDx-1 HGNC:3060|MIM:602582|Ensembl:ENSG00000135144|HPRD:03991|Vega:OTTHUMG00000169610 12 12q24.13 deltex homolog 1 (Drosophila) protein-coding DTX1 deltex homolog 1 (Drosophila) O E3 ubiquitin-protein ligase DTX1|deltex1|hDTX1|protein deltex-1 20121230 -9606 1841 DTYMK - CDC8|PP3731|TMPK|TYMK HGNC:3061|MIM:188345|Ensembl:ENSG00000168393|HPRD:01773|Vega:OTTHUMG00000133409 2 2q37.3 deoxythymidylate kinase (thymidylate kinase) protein-coding DTYMK deoxythymidylate kinase (thymidylate kinase) O dTMP kinase|thymidylate kinase 20121230 -9606 1842 ECM2 RP11-77D6.2 - HGNC:3154|MIM:603479|Ensembl:ENSG00000106823|HPRD:09148|Vega:OTTHUMG00000020226 9 9q22.3 extracellular matrix protein 2, female organ and adipocyte specific protein-coding ECM2 extracellular matrix protein 2, female organ and adipocyte specific O extracellular matrix protein 2|matrix glycoprotein SC1/ECM2 20121230 -9606 1843 DUSP1 - CL100|HVH1|MKP-1|MKP1|PTPN10 HGNC:3064|MIM:600714|Ensembl:ENSG00000120129|HPRD:02835|Vega:OTTHUMG00000130523 5 5q34 dual specificity phosphatase 1 protein-coding DUSP1 dual specificity phosphatase 1 O MAP kinase phosphatase 1|dual specificity protein phosphatase 1|dual specificity protein phosphatase hVH1|mitogen-activated protein kinase phosphatase 1|protein-tyrosine phosphatase CL100|serine/threonine specific protein phosphatase 20121230 -9606 1844 DUSP2 - PAC-1|PAC1 HGNC:3068|MIM:603068|Ensembl:ENSG00000158050|HPRD:04348|Vega:OTTHUMG00000130456 2 2q11 dual specificity phosphatase 2 protein-coding DUSP2 dual specificity phosphatase 2 O dual specificity protein phosphatase 2|dual specificity protein phosphatase PAC-1|dual-specificity phosphatase 2|serine/threonine specific protein phosphatase 20121230 -9606 1845 DUSP3 - VHR HGNC:3069|MIM:600183|Ensembl:ENSG00000108861|HPRD:02553|Vega:OTTHUMG00000180889 17 17q21 dual specificity phosphatase 3 protein-coding DUSP3 dual specificity phosphatase 3 O dual specificity protein phosphatase 3|dual specificity protein phosphatase VHR|serine/threonine specific protein phosphatase|vaccinia H1-related phosphatase|vaccinia virus phosphatase VH1-related 20121230 -9606 1846 DUSP4 - HVH2|MKP-2|MKP2|TYP HGNC:3070|MIM:602747|Ensembl:ENSG00000120875|HPRD:04123|Vega:OTTHUMG00000133395 8 8p12-p11 dual specificity phosphatase 4 protein-coding DUSP4 dual specificity phosphatase 4 O MAP kinase phosphatase 2|VH1 homologous phosphatase 2|dual specificity protein phosphatase 4|dual specificity protein phosphatase hVH2|mitogen-activated protein kinase phosphatase 2|serine/threonine specific protein phosphatase 20121230 -9606 1847 DUSP5 - DUSP|HVH3 HGNC:3071|MIM:603069|Ensembl:ENSG00000138166|HPRD:04349|Vega:OTTHUMG00000019040 10 10q25 dual specificity phosphatase 5 protein-coding DUSP5 dual specificity phosphatase 5 O VH1-like phosphatase 3|dual specificity protein phosphatase 5|dual specificity protein phosphatase hVH3|serine/threonine specific protein phosphatase 20121230 -9606 1848 DUSP6 - MKP3|PYST1 HGNC:3072|MIM:602748|Ensembl:ENSG00000139318|HPRD:04124|Vega:OTTHUMG00000169912 12 12q22-q23 dual specificity phosphatase 6 protein-coding DUSP6 dual specificity phosphatase 6 O MAP kinase phosphatase 3|dual specificity protein phosphatase 6|dual specificity protein phosphatase PYST1|mitogen-activated protein kinase phosphatase 3|serine/threonine specific protein phosphatase 20121230 -9606 1849 DUSP7 - MKPX|PYST2 HGNC:3073|MIM:602749|Ensembl:ENSG00000164086|HPRD:04125|Vega:OTTHUMG00000157819 3 3p21 dual specificity phosphatase 7 protein-coding DUSP7 dual specificity phosphatase 7 O dual specificity protein phosphatase 7|dual specificity protein phosphatase PYST2|dual-specificity phosphatase-7 20121230 -9606 1850 DUSP8 - C11orf81|HB5|HVH-5|HVH8 HGNC:3074|MIM:602038|Ensembl:ENSG00000184545|HPRD:03617|Vega:OTTHUMG00000133348 11 11p15.5 dual specificity phosphatase 8 protein-coding DUSP8 dual specificity phosphatase 8 O H1 phosphatase, vaccinia virus homolog|dual specificity protein phosphatase 8|dual specificity protein phosphatase hVH-5|serine/threonine specific protein phosphatase 20121230 -9606 1851 DUSP8P - - HGNC:3075 10 10q11.2 dual specificity phosphatase 8 pseudogene pseudo DUSP8P dual specificity phosphatase 8 pseudogene O - 20090331 -9606 1852 DUSP9 - MKP-4|MKP4 HGNC:3076|MIM:300134|Ensembl:ENSG00000130829|HPRD:02136|Vega:OTTHUMG00000024211 X Xq28 dual specificity phosphatase 9 protein-coding DUSP9 dual specificity phosphatase 9 O dual specificity protein phosphatase 9|map kinase phosphatase 4|mitogen-activated protein kinase phosphatase 4|serine/threonine specific protein phosphatase 20121230 -9606 1854 DUT - dUTPase HGNC:3078|MIM:601266|Ensembl:ENSG00000128951|HPRD:03165|Vega:OTTHUMG00000172155 15 15q21.1 deoxyuridine triphosphatase protein-coding DUT deoxyuridine triphosphatase O dUTP nucleotidohydrolase|dUTP pyrophosphatase|deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial 20121230 -9606 1855 DVL1 RP5-890O3.5 DVL|DVL1L1 HGNC:3084|MIM:601365|Ensembl:ENSG00000107404|HPRD:03220|Vega:OTTHUMG00000003069 1 1p36 dishevelled, dsh homolog 1 (Drosophila) protein-coding DVL1 dishevelled, dsh homolog 1 (Drosophila) O DSH homolog 1|dishevelled 1 (homologous to Drosophila dsh)|dishevelled-1|segment polarity protein dishevelled homolog DVL-1 20121230 -9606 1856 DVL2 - - HGNC:3086|MIM:602151|Ensembl:ENSG00000004975|HPRD:03690|Vega:OTTHUMG00000102155 17 17p13.1 dishevelled, dsh homolog 2 (Drosophila) protein-coding DVL2 dishevelled, dsh homolog 2 (Drosophila) O dishevelled 2 (homologous to Drosophila dsh)|segment polarity protein dishevelled homolog DVL-2 20121230 -9606 1857 DVL3 - - HGNC:3087|MIM:601368|Ensembl:ENSG00000161202|HPRD:03222|Vega:OTTHUMG00000156841 3 3q27 dishevelled, dsh homolog 3 (Drosophila) protein-coding DVL3 dishevelled, dsh homolog 3 (Drosophila) O DSH homolog 3|dishevelled 3 (homologous to Drosophila dsh)|dishevelled-3|segment polarity protein dishevelled homolog DVL-3 20121230 -9606 1858 DWS - C3DELq22q24|DEL3q22q24 HGNC:3088|MIM:220200 3 3q22-q24 dandy-walker syndrome unknown DWS dandy-walker syndrome O - 20120715 -9606 1859 DYRK1A - DYRK|DYRK1|HP86|MNB|MNBH|MRD7 HGNC:3091|MIM:600855|Ensembl:ENSG00000157540|HPRD:09018|Vega:OTTHUMG00000086657 21 21q22.13 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A O MNB/DYRK protein kinase|dual specificity YAK1-related kinase|dual specificity tyrosine-phosphorylation-regulated kinase 1A|hMNB|mnb protein kinase homolog hp86|protein kinase minibrain homolog|serine/threonine kinase MNB|serine/threonine-specific protein kinase 20121230 -9606 1861 TOR1A - DQ2|DYT1 HGNC:3098|MIM:605204|Ensembl:ENSG00000136827|HPRD:06897|Vega:OTTHUMG00000020794 9 9q34 torsin family 1, member A (torsin A) protein-coding TOR1A torsin family 1, member A (torsin A) O dystonia 1 protein|dystonia 1, torsion (autosomal dominant; torsin A)|torsin family 1 member A|torsin-1A 20121230 -9606 1862 DYT2 - - HGNC:3102|MIM:224500 - - dystonia 2, torsion (autosomal recessive) unknown DYT2 dystonia 2, torsion (autosomal recessive) O - 20110215 -9606 1864 DYT4 - - HGNC:3104|MIM:128101 - - dystonia 4, torsion (autosomal dominant) unknown DYT4 dystonia 4, torsion (autosomal dominant) O - 20120409 -9606 1866 DYT7 - - HGNC:3107|MIM:602124 18 18p dystonia 7, torsion (autosomal dominant) unknown DYT7 dystonia 7, torsion (autosomal dominant) O - 20120622 -9606 1867 DYX1 - RD HGNC:3108|MIM:127700 15 - dyslexia susceptibility 1 unknown DYX1 dyslexia susceptibility 1 O - 20110703 -9606 1869 E2F1 - E2F-1|RBAP1|RBBP3|RBP3 HGNC:3113|MIM:189971|Ensembl:ENSG00000101412|HPRD:01806|Vega:OTTHUMG00000032265 20 20q11.2 E2F transcription factor 1 protein-coding E2F1 E2F transcription factor 1 O PBR3|PRB-binding protein E2F-1|RBAP-1|RBBP-3|retinoblastoma-associated protein 1|retinoblastoma-binding protein 3|transcription factor E2F1 20121230 -9606 1870 E2F2 - E2F-2 HGNC:3114|MIM:600426|Ensembl:ENSG00000007968|HPRD:02692|Vega:OTTHUMG00000003223 1 1p36 E2F transcription factor 2 protein-coding E2F2 E2F transcription factor 2 O transcription factor E2F2 20121230 -9606 1871 E2F3 RP1-177P22.2 E2F-3 HGNC:3115|MIM:600427|Ensembl:ENSG00000112242|HPRD:02693|Vega:OTTHUMG00000016389 6 6p22 E2F transcription factor 3 protein-coding E2F3 E2F transcription factor 3 O transcription factor E2F3 20121230 -9606 1872 E2F3P1 - - HGNC:3116 17 17q11-q12 E2F transcription factor 3 pseudogene 1 pseudo E2F3P1 E2F transcription factor 3 pseudogene 1 O - 20121230 -9606 1874 E2F4 - E2F-4 HGNC:3118|MIM:600659|Ensembl:ENSG00000205250|HPRD:02806|Vega:OTTHUMG00000172975 16 16q21-q22 E2F transcription factor 4, p107/p130-binding protein-coding E2F4 E2F transcription factor 4, p107/p130-binding O p107/p130-binding protein|transcription factor E2F4 20121230 -9606 1875 E2F5 - E2F-5 HGNC:3119|MIM:600967|Ensembl:ENSG00000133740|HPRD:02983|Vega:OTTHUMG00000164785 8 8q21.2 E2F transcription factor 5, p130-binding protein-coding E2F5 E2F transcription factor 5, p130-binding O transcription factor E2F5 20121230 -9606 1876 E2F6 - E2F-6 HGNC:3120|MIM:602944|Ensembl:ENSG00000169016|HPRD:04251|Vega:OTTHUMG00000090565 2 2p25.1 E2F transcription factor 6 protein-coding E2F6 E2F transcription factor 6 O transcription factor E2F6 20121230 -9606 1877 E4F1 - E4F HGNC:3121|MIM:603022|Ensembl:ENSG00000167967|HPRD:04317|Vega:OTTHUMG00000177084 16 16p13.3 E4F transcription factor 1 protein-coding E4F1 E4F transcription factor 1 O p120E4F|p50E4F|putative E3 ubiquitin-protein ligase E4F1|transcription factor E4F|transcription factor E4F1 20121230 -9606 1878 E11S - - HGNC:3112|MIM:129150 19 19q13.1-q13.3 ECHO virus (serotypes 4, 6, 11, 19) sensitivity unknown E11S ECHO virus (serotypes 4, 6, 11, 19) sensitivity O - 20110215 -9606 1879 EBF1 - COE1|EBF|O/E-1|OLF1 HGNC:3126|MIM:164343|Ensembl:ENSG00000164330|HPRD:01256|Vega:OTTHUMG00000130304 5 5q34 early B-cell factor 1 protein-coding EBF1 early B-cell factor 1 O Collier, Olf and EBF transcription factor 1|OE-1|olfactory neuronal transcription factor 1|transcription factor COE1 20121230 -9606 1880 GPR183 RP11-461N23.2 EBI2 HGNC:3128|MIM:605741|Ensembl:ENSG00000169508|HPRD:12040|Vega:OTTHUMG00000017263 13 13q32.3 G protein-coupled receptor 183 protein-coding GPR183 G protein-coupled receptor 183 O EBV-induced G-protein coupled receptor 2|Epstein-Barr virus induced gene 2 (lymphocyte-specific G protein-coupled receptor)|G-protein coupled receptor 183|epstein-Barr virus-induced G-protein coupled receptor 2 20121230 -9606 1881 EBM - - HGNC:3130|MIM:302000 X Xq27.3-qter epidermolysis bullosa, macular type unknown EBM epidermolysis bullosa, macular type O - 20110215 -9606 1884 EBR3 - ULG4 HGNC:3136|MIM:226500 - - epidermolysis bullosa 3, progressiva unknown EBR3 epidermolysis bullosa 3, progressiva O - 20110215 -9606 1885 EBR4 - - HGNC:3137 - - epidermolysis bullosa 4, pseudojunctional (intraepidermal) unknown EBR4 epidermolysis bullosa 4, pseudojunctional (intraepidermal) O - 20110215 -9606 1888 EBVS1 - - HGNC:3143|MIM:132850 1 1p35 Epstein Barr virus integration site 1 other EBVS1 Epstein Barr virus integration site 1 O - 20100629 -9606 1889 ECE1 RP3-329E20.1 ECE HGNC:3146|MIM:600423|Ensembl:ENSG00000117298|HPRD:02690|Vega:OTTHUMG00000002625 1 1p36.1 endothelin converting enzyme 1 protein-coding ECE1 endothelin converting enzyme 1 O ECE-1|endothelin-converting enzyme 1 20121230 -9606 1890 TYMP - ECGF|ECGF1|MEDPS1|MNGIE|MTDPS1|PDECGF|TP|hPD-ECGF HGNC:3148|MIM:131222|Ensembl:ENSG00000025708|HPRD:08833|Vega:OTTHUMG00000150249 22 22q13.33 thymidine phosphorylase protein-coding TYMP thymidine phosphorylase O gliostatin|tdRPase 20121230 -9606 1891 ECH1 - HPXEL HGNC:3149|MIM:600696|Ensembl:ENSG00000104823|HPRD:02825 19 19q13.1 enoyl CoA hydratase 1, peroxisomal protein-coding ECH1 enoyl CoA hydratase 1, peroxisomal O delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial|delta3,5-delta2,4-dienoyl-CoA isomerase|dienoyl-CoA isomerase|enoyl Coenzyme A hydratase 1, peroxisomal|peroxisomal enoyl-CoA hydratase 1 20121230 -9606 1892 ECHS1 - SCEH HGNC:3151|MIM:602292|Ensembl:ENSG00000127884|HPRD:03799|Vega:OTTHUMG00000019320 10 10q26.2-q26.3 enoyl CoA hydratase, short chain, 1, mitochondrial protein-coding ECHS1 enoyl CoA hydratase, short chain, 1, mitochondrial O enoyl Coenzyme A hydratase, short chain, 1, mitochondrial|enoyl-CoA hydratase 1|enoyl-CoA hydratase, mitochondrial|short-chain enoyl-CoA hydratase 20121230 -9606 1893 ECM1 RP11-54A4.6 - HGNC:3153|MIM:602201|Ensembl:ENSG00000143369|HPRD:03727|Vega:OTTHUMG00000012806 1 1q21 extracellular matrix protein 1 protein-coding ECM1 extracellular matrix protein 1 O secretory component p85 20121230 -9606 1894 ECT2 - ARHGEF31 HGNC:3155|MIM:600586|Ensembl:ENSG00000114346|HPRD:11860|Vega:OTTHUMG00000156762 3 3q26.1-q26.2 epithelial cell transforming sequence 2 oncogene protein-coding ECT2 epithelial cell transforming sequence 2 oncogene O epithelial cell-transforming sequence 2 oncogene|protein ECT2 20121230 -9606 1896 EDA RP11-351K23.1 ECTD1|ED1|ED1-A1|ED1-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED HGNC:3157|MIM:300451|Ensembl:ENSG00000158813|HPRD:02347|Vega:OTTHUMG00000021764 X Xq12-q13.1 ectodysplasin A protein-coding EDA ectodysplasin A O X-linked anhidroitic ectodermal dysplasia protein|ectodysplasin-A|oligodontia 1 20121230 -9606 1901 S1PR1 - CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 HGNC:3165|MIM:601974|Ensembl:ENSG00000170989|HPRD:03578|Vega:OTTHUMG00000010835 1 1p21 sphingosine-1-phosphate receptor 1 protein-coding S1PR1 sphingosine-1-phosphate receptor 1 O S1P receptor 1|S1P receptor Edg-1|endothelial differentiation G-protein coupled receptor 1|endothelial differentiation, sphingolipid G-protein-coupled receptor, 1|sphingosine 1-phosphate receptor 1|sphingosine 1-phosphate receptor EDG1|sphingosine 1-phosphate receptor Edg-1 20121230 -9606 1902 LPAR1 RP11-104M22.2 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 HGNC:3166|MIM:602282|Ensembl:ENSG00000198121|HPRD:03790|Vega:OTTHUMG00000020486 9 9q31.3 lysophosphatidic acid receptor 1 protein-coding LPAR1 lysophosphatidic acid receptor 1 O LPA receptor 1|LPA-1|endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2|lysophosphatidic acid receptor Edg-2|ventricular zone gene 1 20121230 -9606 1903 S1PR3 - EDG-3|EDG3|LPB3|S1P3 HGNC:3167|MIM:601965|Ensembl:ENSG00000213694|HPRD:03572|Vega:OTTHUMG00000020173 9 9q22.1-q22.2 sphingosine-1-phosphate receptor 3 protein-coding S1PR3 sphingosine-1-phosphate receptor 3 O G protein-coupled receptor, endothelial differentiation gene-3|S1P receptor 3|S1P receptor EDG3|S1P receptor Edg-3|endothelial differentiation G-protein coupled receptor 3|endothelial differentiation, sphingolipid G-protein-coupled receptor, 3|sphingosine 1-phosphate receptor 3|sphingosine 1-phosphate receptor Edg-3 20121230 -9606 1906 EDN1 - ET1|HDLCQ7|PPET1 HGNC:3176|MIM:131240|Ensembl:ENSG00000078401|HPRD:07030|Vega:OTTHUMG00000014266 6 6p24.1 endothelin 1 protein-coding EDN1 endothelin 1 O endothelin-1|preproendothelin-1 20121230 -9606 1907 EDN2 - ET2|PPET2 HGNC:3177|MIM:131241|Ensembl:ENSG00000127129|HPRD:07173|Vega:OTTHUMG00000006362 1 1p34 endothelin 2 protein-coding EDN2 endothelin 2 O ET-2|endothelin-2|preproendothelin 2|preproendothelin-2 20121230 -9606 1908 EDN3 RP4-614C15.1 ET-3|ET3|HSCR4|PPET3|WS4B HGNC:3178|MIM:131242|Ensembl:ENSG00000124205|HPRD:00570|Vega:OTTHUMG00000032867 20 20q13.2-q13.3 endothelin 3 protein-coding EDN3 endothelin 3 O endothelin-3|preproendothelin-3 20121230 -9606 1909 EDNRA - ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR HGNC:3179|MIM:131243|Ensembl:ENSG00000151617|HPRD:00571|Vega:OTTHUMG00000161354 4 4q31.22 endothelin receptor type A protein-coding EDNRA endothelin receptor type A O G protein-coupled receptor|endothelin receptor subtype A|endothelin-1 receptor|endothelin-1-specific receptor 20121230 -9606 1910 EDNRB RP11-318G21.1 ABCDS|ET-B|ET-BR|ETB|ETBR|ETRB|HSCR|HSCR2|WS4A HGNC:3180|MIM:131244|Ensembl:ENSG00000136160|HPRD:08834|Vega:OTTHUMG00000017111 13 13q22 endothelin receptor type B protein-coding EDNRB endothelin receptor type B O endothelin B receptor|endothelin receptor non-selective type 20121230 -9606 1911 PHC1 - EDR1|HPH1|RAE28 HGNC:3182|MIM:602978|Ensembl:ENSG00000111752|HPRD:16009|Vega:OTTHUMG00000168275 12 12p13 polyhomeotic homolog 1 (Drosophila) protein-coding PHC1 polyhomeotic homolog 1 (Drosophila) O early development regulator 1 (homolog of polyhomeotic 1)|early development regulatory protein 1|polyhomeotic-like 1|polyhomeotic-like protein 1 20121230 -9606 1912 PHC2 - EDR2|HPH2|PH2 HGNC:3183|MIM:602979|Ensembl:ENSG00000134686|HPRD:10340|Vega:OTTHUMG00000004133 1 1p34.3 polyhomeotic homolog 2 (Drosophila) protein-coding PHC2 polyhomeotic homolog 2 (Drosophila) O early development regulator 2 (homolog of polyhomeotic 2)|early development regulatory protein 2|polyhomeotic 2|polyhomeotic-like 2|polyhomeotic-like protein 2 20121230 -9606 1913 EEC1 - EEC HGNC:3186|MIM:129900 7 7q11.2-q21.3 ectrodactyly, ectodermal dysplasia and cleft lip/palate syndrome 1 unknown EEC1 ectrodactyly, ectodermal dysplasia and cleft lip/palate syndrome 1 O - 20110714 -9606 1914 EEC2 - - HGNC:3187 19 - ectrodactyly, ectodermal dysplasia and cleft lip/palate syndrome 2 unknown EEC2 ectrodactyly, ectodermal dysplasia and cleft lip/palate syndrome 2 O - 20110215 -9606 1915 EEF1A1 RP11-505P4.2 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 HGNC:3189|MIM:130590|Ensembl:ENSG00000156508|HPRD:00559|Vega:OTTHUMG00000015031 6 6q14.1 eukaryotic translation elongation factor 1 alpha 1 protein-coding EEF1A1 eukaryotic translation elongation factor 1 alpha 1 O CTCL tumor antigen|EF-1-alpha-1|EF1a-like protein|cervical cancer suppressor 3|elongation factor 1 alpha subunit|elongation factor 1-alpha 1|elongation factor Tu|eukaryotic elongation factor 1 A-1|eukaryotic translation elongation factor 1 alpha 1-like 14|glucocorticoid receptor AF-1 specific elongation factor|leukocyte receptor cluster (LRC) member 7|leukocyte receptor cluster member 7|prostate tumor-inducing protein 1|translation elongation factor 1 alpha 1-like 14 20121230 -9606 1917 EEF1A2 - EEF1AL|EF-1-alpha-2|EF1A|HS1|STN|STNL HGNC:3192|MIM:602959|Ensembl:ENSG00000101210|HPRD:04265|Vega:OTTHUMG00000033076 20 20q13.3 eukaryotic translation elongation factor 1 alpha 2 protein-coding EEF1A2 eukaryotic translation elongation factor 1 alpha 2 O eEF1A-2|elongation factor 1-alpha 2|elongation factor-1 alpha|eukaryotic elongation factor 1 A-2|statin S1|statin-S1 20121230 -9606 1918 EEF1A3 - - HGNC:3193 17 17p11.2 eukaryotic translation elongation factor 1 alpha 3 pseudo EEF1A3 eukaryotic translation elongation factor 1 alpha 3 O - 20121125 -9606 1932 EEF1B2P1 - EEF1B1|EF1B HGNC:3207 15 15q21.2 eukaryotic translation elongation factor 1 beta 2 pseudogene 1 pseudo EEF1B2P1 eukaryotic translation elongation factor 1 beta 2 pseudogene 1 O - 20121230 -9606 1933 EEF1B2 - EEF1B|EEF1B1|EF1B HGNC:3208|MIM:600655|Ensembl:ENSG00000114942|HPRD:02804|Vega:OTTHUMG00000132891 2 2q33.3 eukaryotic translation elongation factor 1 beta 2 protein-coding EEF1B2 eukaryotic translation elongation factor 1 beta 2 O EF-1-beta|elongation factor 1-beta|eukaryotic translation elongation factor 1 beta 1 20121230 -9606 1934 EEF1B2P2 - BETA-3|EEF-1|EEF-1BETA5A|EEF1B|EEF1B3 HGNC:3209 5 5q13.1 eukaryotic translation elongation factor 1 beta 2 pseudogene 2 pseudo EEF1B2P2 eukaryotic translation elongation factor 1 beta 2 pseudogene 2 O - 20121230 -9606 1936 EEF1D UNQ601 EF-1D|EF1D|FP1047 HGNC:3211|MIM:130592|Ensembl:ENSG00000104529|HPRD:00560|Vega:OTTHUMG00000165191 8 8q24.3 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) protein-coding EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) O EF-1-delta|antigen NY-CO-4|elongation factor 1-delta|guanine nucleotide exchange protein 20121230 -9606 1937 EEF1G PRO1608 EF1G|GIG35 HGNC:3213|MIM:130593|Ensembl:ENSG00000254772|HPRD:11745|Vega:OTTHUMG00000167567 11 11q12.3 eukaryotic translation elongation factor 1 gamma protein-coding EEF1G eukaryotic translation elongation factor 1 gamma O EF-1-gamma|PRO1608|eEF-1B gamma|elongation factor 1-gamma|pancreatic tumor-related protein|translation elongation factor eEF-1 gamma chain 20121230 -9606 1938 EEF2 - EEF-2|EF-2|EF2 HGNC:3214|MIM:130610|Ensembl:ENSG00000167658|HPRD:00561 19 19p13.3 eukaryotic translation elongation factor 2 protein-coding EEF2 eukaryotic translation elongation factor 2 O elongation factor 2|polypeptidyl-tRNA translocase 20121230 -9606 1939 EIF2D RP11-534L20.3 HCA56|LGTN HGNC:6583|MIM:613709|Ensembl:ENSG00000143486|HPRD:01057|Vega:OTTHUMG00000036344 1 1q32.1 eukaryotic translation initiation factor 2D protein-coding EIF2D eukaryotic translation initiation factor 2D O hepatocellular carcinoma-associated antigen 56|ligatin 20121230 -9606 1940 EEGV1 - EEGL HGNC:3215|MIM:130180 20 20q electro-encephalographic variant pattern 1 unknown EEGV1 electro-encephalographic variant pattern 1 O - 20110215 -9606 1942 EFNA1 - B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 HGNC:3221|MIM:191164|Ensembl:ENSG00000169242|HPRD:01858|Vega:OTTHUMG00000035312 1 1q21-q22 ephrin-A1 protein-coding EFNA1 ephrin-A1 O TNF alpha-induced protein 4|eph-related receptor tyrosine kinase ligand 1|immediate early response protein B61|ligand of eph-related kinase 1|tumor necrosis factor alpha-induced protein 4|tumor necrosis factor, alpha-induced protein 4 20121230 -9606 1943 EFNA2 - ELF-1|EPLG6|HEK7-L|LERK-6|LERK6 HGNC:3222|MIM:602756|Ensembl:ENSG00000099617|HPRD:04132|Vega:OTTHUMG00000180148 19 19p13.3 ephrin-A2 protein-coding EFNA2 ephrin-A2 O HEK7 ligand|eph-related receptor tyrosine kinase ligand 6 20121230 -9606 1944 EFNA3 - EFL2|EPLG3|Ehk1-L|LERK3 HGNC:3223|MIM:601381|Ensembl:ENSG00000143590|Ensembl:ENSG00000251246|HPRD:03225|Vega:OTTHUMG00000035313|Vega:OTTHUMG00000161134 1 1q21-q22 ephrin-A3 protein-coding EFNA3 ephrin-A3 O EFL-2|EHK1 ligand|LERK-3|eph-related receptor tyrosine kinase ligand 3|ligand of eph-related kinase 3 20121230 -9606 1945 EFNA4 - EFL4|EPLG4|LERK4 HGNC:3224|MIM:601380|Ensembl:ENSG00000243364|HPRD:03224|Vega:OTTHUMG00000035309 1 1q21-q22 ephrin-A4 protein-coding EFNA4 ephrin-A4 O LERK-4|eph-related receptor tyrosine kinase ligand 4|ligand of eph-related kinase 4 20121230 -9606 1946 EFNA5 - AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS HGNC:3225|MIM:601535|Ensembl:ENSG00000184349|HPRD:03324|Vega:OTTHUMG00000128741 5 5q21 ephrin-A5 protein-coding EFNA5 ephrin-A5 O AL-1|LERK-7|eph-related receptor tyrosine kinase ligand 7 20121230 -9606 1947 EFNB1 RP3-496G1.1 CFND|CFNS|EFL3|EPLG2|Elk-L|LERK2 HGNC:3226|MIM:300035|Ensembl:ENSG00000090776|HPRD:02072|Vega:OTTHUMG00000021751 X Xq12 ephrin-B1 protein-coding EFNB1 ephrin-B1 O EFL-3|ELK ligand|LERK-2|eph-related receptor tyrosine kinase ligand 2|ligand of eph-related kinase 2 20121230 -9606 1948 EFNB2 RP11-272L14.1 EPLG5|HTKL|Htk-L|LERK5 HGNC:3227|MIM:600527|Ensembl:ENSG00000125266|HPRD:02754|Vega:OTTHUMG00000017324 13 13q33 ephrin-B2 protein-coding EFNB2 ephrin-B2 O HTK ligand|LERK-5|eph-related receptor tyrosine kinase ligand 5|ligand of eph-related kinase 5 20121230 -9606 1949 EFNB3 - EFL6|EPLG8|LERK8 HGNC:3228|MIM:602297|Ensembl:ENSG00000108947|HPRD:03804|Vega:OTTHUMG00000108161 17 17p13.1 ephrin-B3 protein-coding EFNB3 ephrin-B3 O EPH-related receptor transmembrane ligand ELK-L3|Ephrin B3|eph-related receptor tyrosine kinase ligand 8 20121230 -9606 1950 EGF - HOMG4|URG HGNC:3229|MIM:131530|Ensembl:ENSG00000138798|HPRD:00578|Vega:OTTHUMG00000132044 4 4q25 epidermal growth factor protein-coding EGF epidermal growth factor O beta-urogastrone|pro-epidermal growth factor 20121230 -9606 1951 CELSR3 - CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1 HGNC:3230|MIM:604264|Ensembl:ENSG00000008300|HPRD:09179|Vega:OTTHUMG00000133544 3 3p21.31 cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila) protein-coding CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila) O EGF-like protein 1|EGF-like-domain, multiple 1|anchor protein|cadherin EGF LAG seven-pass G-type receptor 3|cadherin family member 11|epidermal growth factor-like 1|epidermal growth factor-like protein 1|flamingo homolog 1|multiple EGF-like domains 2|multiple EGF-like domains protein 2|multiple epidermal growth factor-like domains protein 2 20121230 -9606 1952 CELSR2 - CDHF10|EGFL2|Flamingo1|MEGF3 HGNC:3231|MIM:604265|Ensembl:ENSG00000143126|HPRD:05040|Vega:OTTHUMG00000012003 1 1p21 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) protein-coding CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) O EGF-like protein 2|EGF-like-domain, multiple 2|cadherin EGF LAG seven-pass G-type receptor 2|cadherin family member 10|epidermal growth factor-like 2|epidermal growth factor-like protein 2|flamingo homolog 3|multiple EGF-like domains protein 3|multiple epidermal growth factor-like domains 3|multiple epidermal growth factor-like domains protein 3 20121230 -9606 1953 MEGF6 - EGFL3 HGNC:3232|MIM:604266|Ensembl:ENSG00000162591|HPRD:11973|Vega:OTTHUMG00000000611 1 1p36.3 multiple EGF-like-domains 6 protein-coding MEGF6 multiple EGF-like-domains 6 O EGF-like protein 3|EGF-like-domain, multiple 3|epidermal growth factor-like protein 3|multiple EGF-like domains protein 6|multiple epidermal growth factor-like domains protein 6 20121230 -9606 1954 MEGF8 - C19orf49|EGFL4|SBP1 HGNC:3233|MIM:604267|Ensembl:ENSG00000105429|HPRD:10370|Vega:OTTHUMG00000150342 19 19q12 multiple EGF-like-domains 8 protein-coding MEGF8 multiple EGF-like-domains 8 O EGF-like domain-containing protein 4|EGF-like-domain, multiple 4|HBV pre-s2 binding protein 1|epidermal growth factor-like protein 4|multiple epidermal growth factor-like domains protein 8 20121230 -9606 1955 MEGF9 UNQ671/PRO1305 EGFL5 HGNC:3234|MIM:604268|Ensembl:ENSG00000106780|Vega:OTTHUMG00000021039 9 9q32-q33.3 multiple EGF-like-domains 9 protein-coding MEGF9 multiple EGF-like-domains 9 O EGF-like-domain, multiple 5|epidermal growth factor-like protein 5|multiple epidermal growth factor-like domains protein 9 20121230 -9606 1956 EGFR - ERBB|ERBB1|HER1|PIG61|mENA HGNC:3236|MIM:131550|Ensembl:ENSG00000146648|HPRD:00579|Vega:OTTHUMG00000023661 7 7p12 epidermal growth factor receptor protein-coding EGFR epidermal growth factor receptor O avian erythroblastic leukemia viral (v-erb-b) oncogene homolog|cell growth inhibiting protein 40|cell proliferation-inducing protein 61|proto-oncogene c-ErbB-1|receptor tyrosine-protein kinase erbB-1 20121230 -9606 1957 EGI - EIG|EIG1 HGNC:3237|MIM:600669 8 8q24 epilepsy, generalized, idiopathic unknown EGI epilepsy, generalized, idiopathic O - 20120622 -9606 1958 EGR1 - AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 HGNC:3238|MIM:128990|Ensembl:ENSG00000120738|HPRD:00549|Vega:OTTHUMG00000129197 5 5q31.1 early growth response 1 protein-coding EGR1 early growth response 1 O EGR-1|early growth response protein 1|nerve growth factor-induced protein A|transcription factor ETR103|transcription factor Zif268|zinc finger protein 225|zinc finger protein Krox-24 20121230 -9606 1959 EGR2 - AT591|CMT1D|CMT4E|KROX20 HGNC:3239|MIM:129010|Ensembl:ENSG00000122877|HPRD:00551|Vega:OTTHUMG00000018308 10 10q21.1 early growth response 2 protein-coding EGR2 early growth response 2 O E3 SUMO-protein ligase EGR2|KROX-20, Drosophila, homolog (early growth response-2)|early growth response protein 2|zinc finger protein Krox-20 20121230 -9606 1960 EGR3 - EGR-3|PILOT HGNC:3240|MIM:602419|Ensembl:ENSG00000179388|HPRD:03881|Vega:OTTHUMG00000097825 8 8p23-p21 early growth response 3 protein-coding EGR3 early growth response 3 O early growth response protein 3|zinc finger protein pilot 20121230 -9606 1961 EGR4 - NGFI-C|NGFIC|PAT133 HGNC:3241|MIM:128992|Ensembl:ENSG00000135625|HPRD:00550|Vega:OTTHUMG00000129774 2 2p13 early growth response 4 protein-coding EGR4 early growth response 4 O AT133|EGR-4|early growth response protein 4 20121230 -9606 1962 EHHADH - ECHD|L-PBE|LBFP|LBP|PBFE HGNC:3247|MIM:607037|Ensembl:ENSG00000113790|HPRD:06125|Vega:OTTHUMG00000156698 3 3q26.3-q28 enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase protein-coding EHHADH enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase O 3,2-trans-enoyl-CoA isomerase|L-3-hydroxyacyl-CoA dehydrogenase|L-bifunctional protein, peroxisomal|PBE|enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase|peroxisomal bifunctional enzyme|peroxisomal enoyl-CoA hydratase 20121230 -9606 1964 EIF1AX RP11-393H10.1 EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C HGNC:3250|MIM:300186|Ensembl:ENSG00000173674|HPRD:02174|Vega:OTTHUMG00000022704 X Xp22.12 eukaryotic translation initiation factor 1A, X-linked protein-coding EIF1AX eukaryotic translation initiation factor 1A, X-linked O Putative eukaryotic translation initiation factor 1A|eIF-1A X isoform|eukaryotic translation initiation factor 1A, X chromosome|eukaryotic translation initiation factor 1A, X-chromosomal|eukaryotic translation initiation factor 4C 20121230 -9606 1965 EIF2S1 - EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A HGNC:3265|MIM:603907|Ensembl:ENSG00000134001|HPRD:04881|Vega:OTTHUMG00000029800 14 14q23.3 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa protein-coding EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa O eIF-2-alpha|eukaryotic translation initiation factor 2 subunit 1|eukaryotic translation initiation factor 2 subunit alpha 20121230 -9606 1967 EIF2B1 - EIF2B|EIF2BA HGNC:3257|MIM:606686|Ensembl:ENSG00000111361|HPRD:09458|Vega:OTTHUMG00000168696 12 12q24.31 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa protein-coding EIF2B1 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa O eIF-2B GDP-GTP exchange factor subunit alpha|translation initiation factor eIF-2B subunit alpha 20121230 -9606 1968 EIF2S3 - EIF2|EIF2G|EIF2gamma|eIF-2gA HGNC:3267|MIM:300161|Ensembl:ENSG00000130741|HPRD:02155|Vega:OTTHUMG00000021262 X Xp22.2-p22.1 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa protein-coding EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa O eIF-2-gamma X|eIF-2gX|eukaryotic translation initiation factor 2 subunit 3|eukaryotic translation initiation factor 2 subunit gamma X|eukaryotic translation initiation factor 2G 20121230 -9606 1969 EPHA2 - ARCC2|CTPA|CTPP1|ECK HGNC:3386|MIM:176946|Ensembl:ENSG00000142627|HPRD:01494|Vega:OTTHUMG00000009527 1 1p36 EPH receptor A2 protein-coding EPHA2 EPH receptor A2 O ephrin type-A receptor 2|epithelial cell receptor protein tyrosine kinase|soluble EPHA2 variant 1|tyrosine-protein kinase receptor ECK 20121230 -9606 1973 EIF4A1 - DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I HGNC:3282|MIM:602641|Ensembl:ENSG00000161960|HPRD:04030|Vega:OTTHUMG00000108149 17 17p13 eukaryotic translation initiation factor 4A1 protein-coding EIF4A1 eukaryotic translation initiation factor 4A1 O ATP-dependent RNA helicase eIF4A-1|eukaryotic initiation factor 4A-I|eukaryotic initiation factor 4AI|eukaryotic translation initiation factor 4A 20121230 -9606 1974 EIF4A2 - BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II HGNC:3284|MIM:601102|Ensembl:ENSG00000156976|HPRD:03062|Vega:OTTHUMG00000156564 3 3q28 eukaryotic translation initiation factor 4A2 protein-coding EIF4A2 eukaryotic translation initiation factor 4A2 O ATP-dependent RNA helicase eIF4A-2|eukaryotic initiation factor 4A-II|eukaryotic translation initiation factor 4A 20121230 -9606 1975 EIF4B - EIF-4B|PRO1843 HGNC:3285|MIM:603928|Ensembl:ENSG00000063046|HPRD:04892|Vega:OTTHUMG00000169570 12 12q13.13 eukaryotic translation initiation factor 4B protein-coding EIF4B eukaryotic translation initiation factor 4B O - 20121230 -9606 1977 EIF4E - CBP|EIF4E1|EIF4EL1|EIF4F HGNC:3287|MIM:133440|Ensembl:ENSG00000151247|HPRD:00591|Vega:OTTHUMG00000161090 4 4q21-q25 eukaryotic translation initiation factor 4E protein-coding EIF4E eukaryotic translation initiation factor 4E O eIF-4E|eIF-4F 25 kDa subunit|eukaryotic translation initiation factor 4E-like 1|mRNA cap-binding protein 20121230 -9606 1978 EIF4EBP1 - 4E-BP1|4EBP1|BP-1|PHAS-I HGNC:3288|MIM:602223|Ensembl:ENSG00000187840|HPRD:03746|Vega:OTTHUMG00000164012 8 8p12 eukaryotic translation initiation factor 4E binding protein 1 protein-coding EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 O eIF4E-binding protein 1|eukaryotic translation initiation factor 4E-binding protein 1|phosphorylated heat- and acid-stable protein regulated by insulin 1 20121230 -9606 1979 EIF4EBP2 - 4EBP2|PHASII HGNC:3289|MIM:602224|Ensembl:ENSG00000148730|HPRD:03747|Vega:OTTHUMG00000018409 10 10q21-q22 eukaryotic translation initiation factor 4E binding protein 2 protein-coding EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 O 4E-BP2|eIF4E-binding protein 2|eukaryotic translation initiation factor 4E-binding protein 2|phosphorylated, heat and acid stable regulated by insulin protein II 20121230 -9606 1980 EIF4EP1 - EIF4EL2|dJ1022P6.3 HGNC:3292 20 20p13 eukaryotic translation initiation factor 4E pseudogene 1 pseudo EIF4EP1 eukaryotic translation initiation factor 4E pseudogene 1 O - 20121230 -9606 1981 EIF4G1 - EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18 HGNC:3296|MIM:600495|Ensembl:ENSG00000114867|HPRD:06774|Vega:OTTHUMG00000156784 3 3q27-qter eukaryotic translation initiation factor 4 gamma, 1 protein-coding EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 O EIF4-gamma|eIF-4-gamma 1|eucaryotic translation initiation factor 4G|eukaryotic translation initiation factor 4 gamma 1 20121230 -9606 1982 EIF4G2 OK/SW-cl.75 AAG1|DAP5|NAT1|P97 HGNC:3297|MIM:602325|Ensembl:ENSG00000110321|HPRD:09084|Vega:OTTHUMG00000165823 11 11p15 eukaryotic translation initiation factor 4 gamma, 2 protein-coding EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 O DAP-5|aging-associated protein 1|death-associated protein 5|eIF-4-gamma 2|eIF-4G 2|eIF4G 2|eukaryotic translation initiation factor 4 gamma 2|eukaryotic translation initiation factor 4G-like 1 20121230 -9606 1983 EIF5 - EIF-5|EIF-5A HGNC:3299|MIM:601710|Ensembl:ENSG00000100664|HPRD:03417|Vega:OTTHUMG00000171839 14 14q32.32 eukaryotic translation initiation factor 5 protein-coding EIF5 eukaryotic translation initiation factor 5 O - 20121230 -9606 1984 EIF5A - EIF-5A|EIF5A1|eIF5AI HGNC:3300|MIM:600187|Ensembl:ENSG00000132507|HPRD:02555|Vega:OTTHUMG00000102197 17 17p13-p12 eukaryotic translation initiation factor 5A protein-coding EIF5A eukaryotic translation initiation factor 5A O eIF-4D|eIF-5A-1|eIF-5A1|eukaryotic initiation factor 5A|eukaryotic translation initiation factor 5A-1|rev-binding factor 20121230 -9606 1986 EIF5AP2 - - HGNC:3303 17 17q25.3 eukaryotic translation initiation factor 5A pseudogene 2 pseudo EIF5AP2 eukaryotic translation initiation factor 5A pseudogene 2 O - 20121230 -9606 1987 EIF5AP3 - - HGNC:3304 19 19q13.2 eukaryotic translation initiation factor 5A pseudogene 3 pseudo EIF5AP3 eukaryotic translation initiation factor 5A pseudogene 3 O - 20121230 -9606 1990 CELA1 - ELA1 HGNC:3308|MIM:130120|Ensembl:ENSG00000139610|HPRD:00553|Vega:OTTHUMG00000167523 12 12q13 chymotrypsin-like elastase family, member 1 protein-coding CELA1 chymotrypsin-like elastase family, member 1 O chymotrypsin-like elastase family member 1|elastase 1, pancreatic|elastase-1|pancreatic elastase 1 20121230 -9606 1991 ELANE - ELA2|GE|HLE|HNE|NE|PMN-E|SCN1 HGNC:3309|MIM:130130|Ensembl:ENSG00000197561|HPRD:00554|Vega:OTTHUMG00000181839 19 19p13.3 elastase, neutrophil expressed protein-coding ELANE elastase, neutrophil expressed O PMN elastase|bone marrow serine protease|elastase 2, neutrophil|elastase-2|granulocyte-derived elastase|human leukocyte elastase|leukocyte elastase|medullasin|neutrophil elastase|polymorphonuclear elastase 20121230 -9606 1992 SERPINB1 - EI|ELANH2|LEI|M/NEI|MNEI|PI-2|PI2 HGNC:3311|MIM:130135|Ensembl:ENSG00000021355|HPRD:00555|Vega:OTTHUMG00000014124 6 6p25 serpin peptidase inhibitor, clade B (ovalbumin), member 1 protein-coding SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 O leukocyte elastase inhibitor|peptidase inhibitor 2|protease inhibitor 2 (anti-elastase), monocyte/neutrophil derived|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 1 20121230 -9606 1993 ELAVL2 RP11-315I14.4 HEL-N1|HELN1|HUB HGNC:3313|MIM:601673|Ensembl:ENSG00000107105|HPRD:03396|Vega:OTTHUMG00000019700 9 9p21 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) protein-coding ELAVL2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) O ELAV-like neuronal protein 1|ELAV-like protein 2|hu-antigen B|nervous system-specific RNA-binding protein Hel-N1 20121230 -9606 1994 ELAVL1 - ELAV1|HUR|Hua|MelG HGNC:3312|MIM:603466|Ensembl:ENSG00000066044|HPRD:16025 19 19p13.2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) protein-coding ELAVL1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) O ELAV-like protein 1|Hu antigen R|embryonic lethal, abnormal vision, drosophila, homolog-like 1|hu-antigen R 20121230 -9606 1995 ELAVL3 - HUC|HUCL|PLE21 HGNC:3314|MIM:603458|Ensembl:ENSG00000196361|HPRD:16024|Vega:OTTHUMG00000182030 19 19p13.2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) protein-coding ELAVL3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) O ELAV-like protein 3|Hu antigen C|hu-antigen C|paraneoplastic cerebellar degeneration-associated antigen|paraneoplastic limbic encephalitis antigen 21 20121230 -9606 1996 ELAVL4 - HUD|PNEM HGNC:3315|MIM:168360|Ensembl:ENSG00000162374|HPRD:01343|Vega:OTTHUMG00000007877 1 1p34 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 protein-coding ELAVL4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 O ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)|ELAV-like protein 4|Embryonic lethal, abnormal vision, Drosophila, homolog of, like-4|Hu antigen D|hu-antigen D|paraneoplastic encephalomyelitis antigen HuD 20121230 -9606 1997 ELF1 RP11-2P5.1 - HGNC:3316|MIM:189973|Ensembl:ENSG00000120690|HPRD:01808|Vega:OTTHUMG00000016783 13 13q13 E74-like factor 1 (ets domain transcription factor) protein-coding ELF1 E74-like factor 1 (ets domain transcription factor) O ETS-related transcription factor Elf-1 20121230 -9606 1998 ELF2 - EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 HGNC:3317|Ensembl:ENSG00000109381|HPRD:16856|Vega:OTTHUMG00000133383 4 4q28 E74-like factor 2 (ets domain transcription factor) protein-coding ELF2 E74-like factor 2 (ets domain transcription factor) O ETS-related transcription factor Elf-2|ets family transcription factor ELF2C|new Ets-related factor 20121230 -9606 1999 ELF3 RP11-510N19.1 EPR-1|ERT|ESE-1|ESX HGNC:3318|MIM:602191|Ensembl:ENSG00000163435|HPRD:03722|Vega:OTTHUMG00000035867 1 1q32.2 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) O E74-like factor 3 (ETS domain transcription factor, serine box, epithelial-specific)|E74-like factor 3 (ets domain transcription factor)|ETS-related transcription factor Elf-3|epithelial-restricted with serine box|epithelium-restricted Ets protein ESX|epithelium-specific Ets transcription factor 1|ets domain transcription factor, serine box (epithelial-specific) 20121230 -9606 2000 ELF4 RP3-510O21.2 ELFR|MEF HGNC:3319|MIM:300775|Ensembl:ENSG00000102034|HPRD:06499|Vega:OTTHUMG00000022390 X Xq26 E74-like factor 4 (ets domain transcription factor) protein-coding ELF4 E74-like factor 4 (ets domain transcription factor) O ETS-related transcription factor Elf-4|myeloid Elf-1-like factor 20121230 -9606 2001 ELF5 - ESE2 HGNC:3320|MIM:605169|Ensembl:ENSG00000135374|HPRD:05525|Vega:OTTHUMG00000166451 11 11p13-p12 E74-like factor 5 (ets domain transcription factor) protein-coding ELF5 E74-like factor 5 (ets domain transcription factor) O ETS-related transcription factor Elf-5|epithelium-restricted ESE-1-related Ets factor|epithelium-specific Ets transcription factor 2 20121230 -9606 2002 ELK1 - - HGNC:3321|MIM:311040|Ensembl:ENSG00000126767|HPRD:02407|Vega:OTTHUMG00000021452 X Xp11.2 ELK1, member of ETS oncogene family protein-coding ELK1 ELK1, member of ETS oncogene family O ETS domain-containing protein Elk-1|ETS-like gene 1|tyrosine kinase (ELK1) oncogene 20121230 -9606 2003 ELK2AP - ELK2|ELK2.1|ELK2P1 HGNC:3323 14 14q32.3 ELK2A, member of ETS oncogene family, pseudogene pseudo ELK2AP ELK2A, member of ETS oncogene family, pseudogene O - 20121230 -9606 2004 ELK3 - ERP|NET|SAP2 HGNC:3325|MIM:600247|Ensembl:ENSG00000111145|HPRD:02593|Vega:OTTHUMG00000170364 12 12q23 ELK3, ETS-domain protein (SRF accessory protein 2) protein-coding ELK3 ELK3, ETS-domain protein (SRF accessory protein 2) O ETS domain-containing protein Elk-3|ETS-domain protein|ETS-related protein ERP|ETS-related protein NET|SAP-2|SRF accessory protein 2|serum response factor accessory protein 2 20121230 -9606 2005 ELK4 - SAP1 HGNC:3326|MIM:600246|Ensembl:ENSG00000158711|HPRD:02592|Vega:OTTHUMG00000037221 1 1q32 ELK4, ETS-domain protein (SRF accessory protein 1) protein-coding ELK4 ELK4, ETS-domain protein (SRF accessory protein 1) O ETS domain-containing protein Elk-4|SAP-1|serum response factor accessory protein 1 20121230 -9606 2006 ELN - SVAS|WBS|WS HGNC:3327|MIM:130160|Ensembl:ENSG00000049540|HPRD:00556|Vega:OTTHUMG00000150229 7 7q11.23 elastin protein-coding ELN elastin O tropoelastin 20121230 -9606 2009 EML1 - ELP79|EMAP|EMAPL|HuEMAP HGNC:3330|MIM:602033|Ensembl:ENSG00000066629|HPRD:03613|Vega:OTTHUMG00000171529 14 14q32 echinoderm microtubule associated protein like 1 protein-coding EML1 echinoderm microtubule associated protein like 1 O EMAP-1|echinoderm microtubule-associated protein-like 1|huEMAP-1 20121230 -9606 2010 EMD XX-FW88778H2.1 EDMD|LEMD5|STA HGNC:3331|MIM:300384|Ensembl:ENSG00000102119|HPRD:02309|Vega:OTTHUMG00000033186 X Xq28 emerin protein-coding EMD emerin O LEM domain containing 5 20121230 -9606 2011 MARK2 - EMK-1|EMK1|PAR-1|Par-1b|Par1b HGNC:3332|MIM:600526|Ensembl:ENSG00000072518|HPRD:02753|Vega:OTTHUMG00000160504 11 11q13.1 MAP/microtubule affinity-regulating kinase 2 protein-coding MARK2 MAP/microtubule affinity-regulating kinase 2 O ELKL motif kinase 1|PAR1 homolog b|Ser/Thr protein kinase PAR-1B|serine/threonine protein kinase EMK|serine/threonine-protein kinase MARK2 20121230 -9606 2012 EMP1 - CL-20|EMP-1|TMP HGNC:3333|MIM:602333|Ensembl:ENSG00000134531|HPRD:11892|Vega:OTTHUMG00000168775 12 12p12.3 epithelial membrane protein 1 protein-coding EMP1 epithelial membrane protein 1 O tumor-associated membrane protein 20121230 -9606 2013 EMP2 - XMP HGNC:3334|MIM:602334|Ensembl:ENSG00000213853|HPRD:11893|Vega:OTTHUMG00000129752 16 16p13.2 epithelial membrane protein 2 protein-coding EMP2 epithelial membrane protein 2 O EMP-2 20121230 -9606 2014 EMP3 - YMP HGNC:3335|MIM:602335|Ensembl:ENSG00000142227|HPRD:18514 19 19q13.3 epithelial membrane protein 3 protein-coding EMP3 epithelial membrane protein 3 O EMP-3|HNMP-1|hematopoietic neural membrane protein 1 20121230 -9606 2015 EMR1 - TM7LN3 HGNC:3336|MIM:600493|Ensembl:ENSG00000174837|HPRD:02733 19 19p13.3 egf-like module containing, mucin-like, hormone receptor-like 1 protein-coding EMR1 egf-like module containing, mucin-like, hormone receptor-like 1 O EGF-like module receptor 1|EGF-like module-containing mucin-like hormone receptor-like 1|EMR1 hormone receptor|egf-like module containing, mucin-like, hormone receptor-like sequence 1 20121230 -9606 2016 EMX1 - - HGNC:3340|MIM:600034|Ensembl:ENSG00000135638|HPRD:08963|Vega:OTTHUMG00000129778 2 2p13.2 empty spiracles homeobox 1 protein-coding EMX1 empty spiracles homeobox 1 O empty spiracles homolog 1|empty spiracles-like protein 1|homeobox protein EMX1 20121230 -9606 2017 CTTN - EMS1 HGNC:3338|MIM:164765|Ensembl:ENSG00000085733|HPRD:01268|Vega:OTTHUMG00000134307 11 11q13 cortactin protein-coding CTTN cortactin O 1110020L01Rik|amplaxin|ems1 sequence (mammary tumor and squamous cell carcinoma-associated (p80/85 src substrate)|oncogene EMS1|src substrate cortactin 20121230 -9606 2018 EMX2 - - HGNC:3341|MIM:600035|Ensembl:ENSG00000170370|HPRD:02495|Vega:OTTHUMG00000019123 10 10q26.1 empty spiracles homeobox 2 protein-coding EMX2 empty spiracles homeobox 2 O empty spiracles homolog 2|empty spiracles-like protein 2|homeobox protein EMX2 20121230 -9606 2019 EN1 - - HGNC:3342|MIM:131290|Ensembl:ENSG00000163064|HPRD:08835|Vega:OTTHUMG00000131401 2 2q14.2 engrailed homeobox 1 protein-coding EN1 engrailed homeobox 1 O engrailed homolog 1|homeobox protein en-1|homeobox protein engrailed-1|hu-En-1 20121230 -9606 2020 EN2 tcag7.568 - HGNC:3343|MIM:131310|Ensembl:ENSG00000164778|HPRD:08836|Vega:OTTHUMG00000151354 7 7q36 engrailed homeobox 2 protein-coding EN2 engrailed homeobox 2 O engrailed homolog 2|engrailed-2|homeobox protein en-2|homeobox protein engrailed-2|hu-En-2 20121230 -9606 2021 ENDOG - - HGNC:3346|MIM:600440|Ensembl:ENSG00000167136|HPRD:02704|Vega:OTTHUMG00000020763 9 9q34.1 endonuclease G protein-coding ENDOG endonuclease G O endo G|endonuclease G, mitochondrial|mitochondrial endonuclease G 20121230 -9606 2022 ENG RP11-228B15.2 CD105|END|HHT1|ORW|ORW1 HGNC:3349|MIM:131195|Ensembl:ENSG00000106991|HPRD:00565|Vega:OTTHUMG00000020723 9 9q34.11 endoglin protein-coding ENG endoglin O CD105 antigen 20121230 -9606 2023 ENO1 - ENO1L1|MPB1|NNE|PPH HGNC:3350|MIM:172430|Ensembl:ENSG00000074800|HPRD:01400|Vega:OTTHUMG00000001773 1 1p36.2 enolase 1, (alpha) protein-coding ENO1 enolase 1, (alpha) O 2-phospho-D-glycerate hydro-lyase|MYC promoter-binding protein 1|alpha enolase like 1|alpha-enolase|enolase-alpha|non-neural enolase|phosphopyruvate hydratase|plasminogen-binding protein|tau-crystallin 20121230 -9606 2025 ENO1P1 - ENO1P HGNC:3352 1 1q43 enolase 1, (alpha) pseudogene 1 pseudo ENO1P1 enolase 1, (alpha) pseudogene 1 O - 20121230 -9606 2026 ENO2 - NSE HGNC:3353|MIM:131360|Ensembl:ENSG00000111674|HPRD:00573|Vega:OTTHUMG00000168967 12 12p13 enolase 2 (gamma, neuronal) protein-coding ENO2 enolase 2 (gamma, neuronal) O 2-phospho-D-glycerate hydro-lyase|2-phospho-D-glycerate hydrolyase|gamma-enolase|neural enolase|neuron specific gamma enolase|neuron-specific enolase|neurone-specific enolase 20121230 -9606 2027 ENO3 - GSD13|MSE HGNC:3354|MIM:131370|Ensembl:ENSG00000108515|HPRD:11746|Vega:OTTHUMG00000099394 17 17pter-p11 enolase 3 (beta, muscle) protein-coding ENO3 enolase 3 (beta, muscle) O 2-phospho-D-glycerate hydrolyase|beta-enolase|muscle-specific enolase|skeletal muscle enolase 20121230 -9606 2028 ENPEP - APA|CD249|gp160 HGNC:3355|MIM:138297|Ensembl:ENSG00000138792|HPRD:08848|Vega:OTTHUMG00000132546 4 4q25 glutamyl aminopeptidase (aminopeptidase A) protein-coding ENPEP glutamyl aminopeptidase (aminopeptidase A) O AP-A|EAP|aminopeptidase A|differentiation antigen gp160|glutamyl aminopeptidase 20121230 -9606 2029 ENSA RP11-54A4.10-004 ARPP-19e HGNC:3360|MIM:603061|Ensembl:ENSG00000143420|HPRD:11927|Vega:OTTHUMG00000035004 1 1q21.3 endosulfine alpha protein-coding ENSA endosulfine alpha O alpha-endosulfine 20121230 -9606 2030 SLC29A1 - ENT1 HGNC:11003|MIM:602193|Ensembl:ENSG00000112759|HPRD:03724|Vega:OTTHUMG00000014759 6 6p21.1 solute carrier family 29 (nucleoside transporters), member 1 protein-coding SLC29A1 solute carrier family 29 (nucleoside transporters), member 1 O equilibrative NBMPR-sensitive nucleoside transporter|equilibrative nitrobenzylmercaptopurine riboside (NBMPR)-sensitive nucleoside transporter|equilibrative nitrobenzylmercaptopurine riboside-sensitive nucleoside transporter|equilibrative nucleoside transporter 1|nucleoside transporter, es-type|solute carrier family 29 member 1|solute carrier family 29, member 1 20121230 -9606 2031 ENUR1 - - HGNC:3369|MIM:600631 13 13q13-q14.3 enuresis, nocturnal 1 unknown ENUR1 enuresis, nocturnal 1 O - 20120622 -9606 2032 ENUR2 - - HGNC:3370|MIM:600808 12 12q13-q21 enuresis, nocturnal 2 unknown ENUR2 enuresis, nocturnal 2 O - 20120622 -9606 2033 EP300 RP1-85F18.1 KAT3B|RSTS2|p300 HGNC:3373|MIM:602700|Ensembl:ENSG00000100393|HPRD:04078|Vega:OTTHUMG00000150937 22 22q13.2 E1A binding protein p300 protein-coding EP300 E1A binding protein p300 O E1A-associated protein p300|E1A-binding protein, 300kD|histone acetyltransferase p300|p300 HAT 20121230 -9606 2034 EPAS1 - ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 HGNC:3374|MIM:603349|Ensembl:ENSG00000116016|HPRD:06787|Vega:OTTHUMG00000128818 2 2p21-p16 endothelial PAS domain protein 1 protein-coding EPAS1 endothelial PAS domain protein 1 O EPAS-1|HIF-1-alpha-like factor|HIF-1alpha-like factor|HIF-2-alpha|HIF2-alpha|PAS domain-containing protein 2|basic-helix-loop-helix-PAS protein MOP2|class E basic helix-loop-helix protein 73|endothelial PAS domain-containing protein 1|hypoxia-inducible factor 2 alpha|hypoxia-inducible factor 2-alpha|member of PAS protein 2 20121230 -9606 2035 EPB41 RP11-242O24.1 4.1R|EL1|HE HGNC:3377|MIM:130500|Ensembl:ENSG00000159023|HPRD:00558|Vega:OTTHUMG00000003644 1 1p33-p32 erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) protein-coding EPB41 erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) O EPB4.1|P4.1|band 4.1|erythrocyte surface protein band 4.1|protein 4.1 20121230 -9606 2036 EPB41L1 RP11-234K24.1 4.1N|MRD11 HGNC:3378|MIM:602879|Ensembl:ENSG00000088367|HPRD:04193|Vega:OTTHUMG00000032378 20 20q11.2-q12 erythrocyte membrane protein band 4.1-like 1 protein-coding EPB41L1 erythrocyte membrane protein band 4.1-like 1 O band 4.1-like protein 1|neuron-type nonerythroid protein 4.1|neuronal protein 4.1 20121230 -9606 2037 EPB41L2 RP3-324N14.1 4.1-G|4.1G HGNC:3379|MIM:603237|Ensembl:ENSG00000079819|HPRD:09126|Vega:OTTHUMG00000015560 6 6q23 erythrocyte membrane protein band 4.1-like 2 protein-coding EPB41L2 erythrocyte membrane protein band 4.1-like 2 O band 4.1-like protein 2|erythrocyte membrane protein band 4.1 like-protein 2|generally expressed protein 4.1 20121230 -9606 2038 EPB42 - PA|SPH5 HGNC:3381|MIM:177070|Ensembl:ENSG00000166947|HPRD:01517|Vega:OTTHUMG00000130701 15 15q15-q21 erythrocyte membrane protein band 4.2 protein-coding EPB42 erythrocyte membrane protein band 4.2 O P4.2|erythrocyte protein 4.2|erythrocyte surface protein band 4.2 20121230 -9606 2039 EPB49 - DMT HGNC:3382|MIM:125305|Ensembl:ENSG00000158856|HPRD:00506|Vega:OTTHUMG00000097087 8 8p21.1 erythrocyte membrane protein band 4.9 (dematin) protein-coding EPB49 erythrocyte membrane protein band 4.9 (dematin) O dematin 20121230 -9606 2040 STOM RP11-342H3.1 BND7|EPB7|EPB72 HGNC:3383|MIM:133090|Ensembl:ENSG00000148175|HPRD:00585|Vega:OTTHUMG00000020590 9 9q34.1 stomatin protein-coding STOM stomatin O erythrocyte band 7 integral membrane protein|erythrocyte membrane protein band 7.2 (stomatin)|erythrocyte surface protein band 7.2|protein 7.2b 20121230 -9606 2041 EPHA1 - EPH|EPHT|EPHT1 HGNC:3385|MIM:179610|Ensembl:ENSG00000146904|HPRD:01554|Vega:OTTHUMG00000155894 7 7q34 EPH receptor A1 protein-coding EPHA1 EPH receptor A1 O eph tyrosine kinase 1|ephrin type-A receptor 1|erythropoietin-producing hepatoma amplified sequence|erythropoietin-producing hepatoma receptor|hEpha1|oncogene EPH|soluble EPHA1 variant 1|soluble EPHA1 variant 2|tyrosine-protein kinase receptor EPH 20121230 -9606 2042 EPHA3 - EK4|ETK|ETK1|HEK|HEK4|TYRO4 HGNC:3387|MIM:179611|Ensembl:ENSG00000044524|HPRD:01555|Vega:OTTHUMG00000159040 3 3p11.2 EPH receptor A3 protein-coding EPHA3 EPH receptor A3 O EPH-like kinase 4|TYRO4 protein tyrosine kinase|eph-like tyrosine kinase 1|ephrin type-A receptor 3|human embryo kinase 1|tyrosine-protein kinase receptor ETK1 20121230 -9606 2043 EPHA4 - HEK8|SEK|TYRO1 HGNC:3388|MIM:602188|Ensembl:ENSG00000116106|HPRD:03719|Vega:OTTHUMG00000133142 2 2q36.1 EPH receptor A4 protein-coding EPHA4 EPH receptor A4 O EK8|EPH-like kinase 8|TYRO1 protein tyrosine kinase|ephrin type-A receptor 4|receptor protein-tyrosine kinase HEK8|tyrosine-protein kinase TYRO1|tyrosine-protein kinase receptor SEK 20121230 -9606 2044 EPHA5 - CEK7|EHK1|HEK7|TYRO4 HGNC:3389|MIM:600004|Ensembl:ENSG00000145242|HPRD:02474|Vega:OTTHUMG00000129273 4 4q13.1 EPH receptor A5 protein-coding EPHA5 EPH receptor A5 O EHK-1|EK7|EPH homology kinase 1|EPH-like kinase 7|Eph homology kinase-1|brain-specific kinase|ephrin type-A receptor 5|receptor protein-tyrosine kinase HEK7|tyrosine-protein kinase receptor EHK-1 20121230 -9606 2045 EPHA7 - EHK3|HEK11 HGNC:3390|MIM:602190|Ensembl:ENSG00000135333|HPRD:03721|Vega:OTTHUMG00000015228 6 6q16.1 EPH receptor A7 protein-coding EPHA7 EPH receptor A7 O EHK-3|EK11|EPH homology kinase 3|EPH-like kinase 11|Eph homology kinase-3|ephrin type-A receptor 7|receptor protein-tyrosine kinase HEK11|tyrosine-protein kinase receptor EHK-3 20121230 -9606 2046 EPHA8 RP1-61A9.3 EEK|EK3|HEK3 HGNC:3391|MIM:176945|Ensembl:ENSG00000070886|HPRD:01493|Vega:OTTHUMG00000002892 1 1p36.12 EPH receptor A8 protein-coding EPHA8 EPH receptor A8 O EPH- and ELK-related kinase|EPH- and ELK-related tyrosine kinase|EPH-like kinase 3|ephrin type-A receptor 8|hydroxyaryl-protein kinase|protein-tyrosine kinase|tyrosine-protein kinase receptor EEK|tyrosylprotein kinase 20121230 -9606 2047 EPHB1 - ELK|EPHT2|Hek6|NET HGNC:3392|MIM:600600|Ensembl:ENSG00000154928|HPRD:02790|Vega:OTTHUMG00000159804 3 3q21-q23 EPH receptor B1 protein-coding EPHB1 EPH receptor B1 O EK6|EPH-like kinase 6|eph tyrosine kinase 2|ephrin type-B receptor 1|neuronally-expressed EPH-related tyrosine kinase|soluble EPHB1 variant 1|tyrosine-protein kinase receptor EPH-2 20121230 -9606 2048 EPHB2 - CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5 HGNC:3393|MIM:600997|Ensembl:ENSG00000133216|HPRD:02997|Vega:OTTHUMG00000002881 1 1p36.1-p35 EPH receptor B2 protein-coding EPHB2 EPH receptor B2 O EPH-like kinase 5|developmentally-regulated Eph-related tyrosine kinase|elk-related tyrosine kinase|eph tyrosine kinase 3|ephrin type-B receptor 2|protein-tyrosine kinase HEK5|renal carcinoma antigen NY-REN-47|tyrosine-protein kinase TYRO5|tyrosine-protein kinase receptor EPH-3 20121230 -9606 2049 EPHB3 - ETK2|HEK2|TYRO6 HGNC:3394|MIM:601839|Ensembl:ENSG00000182580|HPRD:03502|Vega:OTTHUMG00000156710 3 3q21-qter EPH receptor B3 protein-coding EPHB3 EPH receptor B3 O EK2|EPH-like kinase 2|EPH-like tyrosine kinase 2|EPH-like tyrosine kinase-2|embryonic kinase 2|ephrin type-B receptor 3|human embryo kinase 2|tyrosine-protein kinase TYRO6 20121230 -9606 2050 EPHB4 - HTK|MYK1|TYRO11 HGNC:3395|MIM:600011|Ensembl:ENSG00000196411|HPRD:02481|Vega:OTTHUMG00000157040 7 7q22 EPH receptor B4 protein-coding EPHB4 EPH receptor B4 O ephrin receptor EphB4|ephrin type-B receptor 4|hepatoma transmembrane kinase|soluble EPHB4 variant 1|soluble EPHB4 variant 2|soluble EPHB4 variant 3|tyrosine-protein kinase TYRO11|tyrosine-protein kinase receptor HTK 20121230 -9606 2051 EPHB6 - HEP HGNC:3396|MIM:602757|Ensembl:ENSG00000106123|HPRD:04133|Vega:OTTHUMG00000155707 7 7q33-q35 EPH receptor B6 protein-coding EPHB6 EPH receptor B6 O ephrin type-B receptor 6|tyrosine-protein kinase-defective receptor EPH-6 20121230 -9606 2052 EPHX1 - EPHX|EPOX|HYL1|MEH HGNC:3401|MIM:132810|Ensembl:ENSG00000143819|HPRD:00581|Vega:OTTHUMG00000037743 1 1q42.1 epoxide hydrolase 1, microsomal (xenobiotic) protein-coding EPHX1 epoxide hydrolase 1, microsomal (xenobiotic) O epoxide hydratase|epoxide hydrolase 1 20121230 -9606 2053 EPHX2 - CEH|SEH HGNC:3402|MIM:132811|Ensembl:ENSG00000120915|HPRD:00582|Vega:OTTHUMG00000102115 8 8p21 epoxide hydrolase 2, cytoplasmic protein-coding EPHX2 epoxide hydrolase 2, cytoplasmic O bifunctional epoxide hydrolase 2|epoxide hydratase|epoxide hydrolase 2, cytosolic|epoxide hydrolase, soluble 20121230 -9606 2054 STX2 - EPIM|EPM|STX2A|STX2B|STX2C HGNC:3403|MIM:132350|Ensembl:ENSG00000111450|HPRD:11816|Vega:OTTHUMG00000168365 12 12q24.33 syntaxin 2 protein-coding STX2 syntaxin 2 O epimorphin|syntaxin-2 20121230 -9606 2055 CLN8 - C8orf61|EPMR HGNC:2079|MIM:607837|Ensembl:ENSG00000182372|HPRD:06383|Vega:OTTHUMG00000090343 8 8p23 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) protein-coding CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) O protein CLN8 20121230 -9606 2056 EPO - EP|MVCD2 HGNC:3415|MIM:133170|Ensembl:ENSG00000130427|HPRD:00586|Vega:OTTHUMG00000152121 7 7q22 erythropoietin protein-coding EPO erythropoietin O epoetin 20121230 -9606 2057 EPOR - EPO-R HGNC:3416|MIM:133171|Ensembl:ENSG00000187266|HPRD:00587|Vega:OTTHUMG00000182027 19 19p13.3-p13.2 erythropoietin receptor protein-coding EPOR erythropoietin receptor O - 20121230 -9606 2058 EPRS PIG32 EARS|GLUPRORS|PARS|QARS|QPRS HGNC:3418|MIM:138295|Ensembl:ENSG00000136628|HPRD:00703|Vega:OTTHUMG00000037433 1 1q41 glutamyl-prolyl-tRNA synthetase protein-coding EPRS glutamyl-prolyl-tRNA synthetase O bifunctional aminoacyl-tRNA synthetase|bifunctional glutamate/proline--tRNA ligase|cell proliferation-inducing gene 32 protein|glutamate tRNA ligase|glutaminyl-tRNA synthetase|proliferation-inducing gene 32 protein|proliferation-inducing protein 32|proline tRNA ligase|proline-tRNA ligase|prolyl-tRNA synthetase 20121230 -9606 2059 EPS8 - - HGNC:3420|MIM:600206|Ensembl:ENSG00000151491|HPRD:02563|Vega:OTTHUMG00000168787 12 12p12.3 epidermal growth factor receptor pathway substrate 8 protein-coding EPS8 epidermal growth factor receptor pathway substrate 8 O epidermal growth factor receptor kinase substrate 8 20121230 -9606 2060 EPS15 - AF-1P|AF1P|MLLT5 HGNC:3419|MIM:600051|Ensembl:ENSG00000085832|HPRD:08968|Vega:OTTHUMG00000008192 1 1p32 epidermal growth factor receptor pathway substrate 15 protein-coding EPS15 epidermal growth factor receptor pathway substrate 15 O ALL1 fused gene from chromosome 1|epidermal growth factor receptor substrate 15|protein AF-1p 20121230 -9606 2063 NR2F6 - EAR-2|EAR2|ERBAL2 HGNC:7977|MIM:132880|Ensembl:ENSG00000160113|HPRD:00583 19 19p13.1 nuclear receptor subfamily 2, group F, member 6 protein-coding NR2F6 nuclear receptor subfamily 2, group F, member 6 O ERBA-related gene-2|V-erbA-related protein 2|nuclear receptor V-erbA-related|nuclear receptor subfamily 2 group F member 6|v-erb-a avian erythroblastic leukemia viral oncogene homolog-like 2 20121230 -9606 2064 ERBB2 - CD340|HER-2|HER-2/neu|HER2|MLN 19|NEU|NGL|TKR1 HGNC:3430|MIM:164870|Ensembl:ENSG00000141736|HPRD:01281|Vega:OTTHUMG00000179300 17 17q12 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) protein-coding ERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) O c-erb B2/neu protein|herstatin|metastatic lymph node gene 19 protein|neuroblastoma/glioblastoma derived oncogene homolog|p185erbB2|proto-oncogene Neu|proto-oncogene c-ErbB-2|receptor tyrosine-protein kinase erbB-2|tyrosine kinase-type cell surface receptor HER2|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 (neuro/glioblastoma derived oncogene homolog) 20121230 -9606 2065 ERBB3 - ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 HGNC:3431|MIM:190151|Ensembl:ENSG00000065361|HPRD:01820|Vega:OTTHUMG00000170140 12 12q13 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) protein-coding ERBB3 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) O proto-oncogene-like protein c-ErbB-3|receptor tyrosine-protein kinase erbB-3|tyrosine kinase-type cell surface receptor HER3 20121230 -9606 2066 ERBB4 - HER4|p180erbB4 HGNC:3432|MIM:600543|Ensembl:ENSG00000178568|HPRD:02767|Vega:OTTHUMG00000133012 2 2q33.3-q34 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) protein-coding ERBB4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) O avian erythroblastic leukemia viral (v-erb-b2) oncogene homolog 4|proto-oncogene-like protein c-ErbB-4|receptor tyrosine-protein kinase erbB-4|tyrosine kinase-type cell surface receptor HER4 20121230 -9606 2067 ERCC1 - COFS4|RAD10|UV20 HGNC:3433|MIM:126380|Ensembl:ENSG00000012061|HPRD:00533|Vega:OTTHUMG00000182121 19 19q13.32 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) protein-coding ERCC1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) O DNA excision repair protein ERCC-1 20121230 -9606 2068 ERCC2 - COFS2|EM9|TTD|XPD HGNC:3434|MIM:126340|Ensembl:ENSG00000104884|HPRD:00530|Vega:OTTHUMG00000048190 19 19q13.3 excision repair cross-complementing rodent repair deficiency, complementation group 2 protein-coding ERCC2 excision repair cross-complementing rodent repair deficiency, complementation group 2 O BTF2 p80|CXPD|DNA excision repair protein ERCC-2|DNA repair protein complementing XP-D cells|TFIIH 80 kDa subunit|TFIIH basal transcription factor complex 80 kDa subunit|TFIIH basal transcription factor complex helicase XPD subunit|TFIIH basal transcription factor complex helicase subunit|TFIIH p80|basic transcription factor 2 80 kDa subunit|xeroderma pigmentosum complementary group D|xeroderma pigmentosum group D-complementing protein 20121230 -9606 2069 EREG - ER HGNC:3443|MIM:602061|Ensembl:ENSG00000124882|HPRD:03638|Vega:OTTHUMG00000130005 4 4q13.3 epiregulin protein-coding EREG epiregulin O proepiregulin 20121230 -9606 2070 EYA4 RP11-704J17.4 CMD1J|DFNA10 HGNC:3522|MIM:603550|Ensembl:ENSG00000112319|HPRD:04648|Vega:OTTHUMG00000015602 6 6q23 eyes absent homolog 4 (Drosophila) protein-coding EYA4 eyes absent homolog 4 (Drosophila) O dJ78N10.1 (eyes absent)|eyes absent homolog 4 20121230 -9606 2071 ERCC3 - BTF2|GTF2H|RAD25|TFIIH|XPB HGNC:3435|MIM:133510|Ensembl:ENSG00000163161|HPRD:00593|Vega:OTTHUMG00000131530 2 2q21 excision repair cross-complementing rodent repair deficiency, complementation group 3 protein-coding ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 O BTF2 p89|DNA excision repair protein ERCC-3|DNA repair protein complementing XP-B cells|TFIIH 89 kDa subunit|TFIIH basal transcription factor complex 89 kDa subunit|TFIIH basal transcription factor complex helicase XPB subunit|TFIIH p89|basic transcription factor 2 89 kDa subunit|xeroderma pigmentosum group B-complementing protein|xeroderma pigmentosum, complementation group B 20121230 -9606 2072 ERCC4 - ERCC11|RAD1|XPF HGNC:3436|MIM:133520|Ensembl:ENSG00000175595|HPRD:00594|Vega:OTTHUMG00000048194 16 16p13.12 excision repair cross-complementing rodent repair deficiency, complementation group 4 protein-coding ERCC4 excision repair cross-complementing rodent repair deficiency, complementation group 4 O DNA excision repair protein ERCC-4|DNA repair endonuclease XPF|DNA repair protein complementing XP-F cells|excision-repair, complementing defective, in Chinese hamster|xeroderma pigmentosum group F-complementing protein|xeroderma pigmentosum, complementation group F 20121230 -9606 2073 ERCC5 RP11-484I6.5 COFS3|ERCM2|UVDR|XPG|XPGC HGNC:3437|MIM:133530|Ensembl:ENSG00000134899|HPRD:00595|Vega:OTTHUMG00000017310 13 13q33 excision repair cross-complementing rodent repair deficiency, complementation group 5 protein-coding ERCC5 excision repair cross-complementing rodent repair deficiency, complementation group 5 O DNA excision repair protein ERCC-5|DNA repair protein complementing XP-G cells|XPG-complementing protein|xeroderma pigmentosum, complementation group G 20121230 -9606 2074 ERCC6 - ARMD5|CKN2|COFS|COFS1|CSB|RAD26|UVSS1 HGNC:3438|MIM:609413|Ensembl:ENSG00000225830|HPRD:00596|Vega:OTTHUMG00000018195 10 10q11.23 excision repair cross-complementing rodent repair deficiency, complementation group 6 protein-coding ERCC6 excision repair cross-complementing rodent repair deficiency, complementation group 6 O ATP-dependent helicase ERCC6|Cockayne syndrome B protein|Cockayne syndrome group B protein|DNA excision repair protein ERCC-6|Rad26 homolog|cockayne syndrome protein CSB 20121230 -9606 2076 ERCM1 - - HGNC:3440|MIM:133535 3 - excision repair complementing defective repair in mouse cells unknown ERCM1 excision repair complementing defective repair in mouse cells O - 20080828 -9606 2077 ERF - PE-2|PE2 HGNC:3444|MIM:611888|Ensembl:ENSG00000105722|HPRD:09942 19 19q13 Ets2 repressor factor protein-coding ERF Ets2 repressor factor O ETS domain-containing transcription factor ERF 20121230 -9606 2078 ERG - erg-3|p55 HGNC:3446|MIM:165080|Ensembl:ENSG00000157554|HPRD:01298|Vega:OTTHUMG00000090767 21 21q22.3 v-ets erythroblastosis virus E26 oncogene homolog (avian) protein-coding ERG v-ets erythroblastosis virus E26 oncogene homolog (avian) O TMPRSS2/ERG fusion|ets-related|transcriptional regulator ERG|transcriptional regulator ERG (transforming protein ERG)|v-ets avian erythroblastosis virus E26 oncogene related|v-ets erythroblastosis virus E26 oncogene like 20121230 -9606 2079 ERH - DROER HGNC:3447|MIM:601191|Ensembl:ENSG00000100632|HPRD:09026|Vega:OTTHUMG00000171323 14 14q24.1|7q34 enhancer of rudimentary homolog (Drosophila) protein-coding ERH enhancer of rudimentary homolog (Drosophila) O enhancer of rudimentary homolog 20121230 -9606 2081 ERN1 - IRE1|IRE1P|IRE1a|hIRE1p HGNC:3449|MIM:604033|Ensembl:ENSG00000178607|HPRD:04943|Vega:OTTHUMG00000178879 17 17q24.2 endoplasmic reticulum to nucleus signaling 1 protein-coding ERN1 endoplasmic reticulum to nucleus signaling 1 O ER to nucleus signalling 1|endoplasmic reticulum-to-nucleus signaling 1|inositol-requiring 1|inositol-requiring enzyme 1|inositol-requiring protein 1|ire1-alpha|protein kinase/endoribonuclease|serine/threonine-protein kinase/endoribonuclease IRE1 20121230 -9606 2082 ERPL1 - HLM2 HGNC:3450|MIM:131190 1 1pter-p36 endogenous retroviral pol gene-like sequence 1 (clone HLM2) unknown ERPL1 endogenous retroviral pol gene-like sequence 1 (clone HLM2) O - 20120710 -9606 2083 ERPL2 - HLM-25 HGNC:3451|MIM:131180 5 5q33.2 endogenous retroviral pol gene-like sequence 2 unknown ERPL2 endogenous retroviral pol gene-like sequence 2 O - 20120511 -9606 2086 ERV3-1 - ERV-R|ERV3|ERVR|HERV-R|HERVR|envR HGNC:3454|MIM:131170|Ensembl:ENSG00000213462|HPRD:15919|Vega:OTTHUMG00000165023 7 7q11.2 endogenous retrovirus group 3, member 1 protein-coding ERV3-1 endogenous retrovirus group 3, member 1 O ERV-3 envelope protein|ERV-R envelope protein|ERV3-1 envelope protein|HERV-R envelope protein|HERV-R_7q21.2 provirus ancestral Env polyprotein|endogenous retroviral sequence 3 20121230 -9606 2090 ESA4 - - HGNC:3462|MIM:133220 11 11q13-q22 esterase A4 protein-coding ESA4 esterase A4 O - 20100204 -9606 2091 FBL - FIB|FLRN|RNU3IP1 HGNC:3599|MIM:134795|Ensembl:ENSG00000105202|HPRD:00617 19 19q13.1 fibrillarin protein-coding FBL fibrillarin O 34 kDa nucleolar scleroderma antigen|34-kD nucleolar scleroderma antigen|RNA, U3 small nucleolar interacting protein 1|rRNA 2'-O-methyltransferase fibrillarin 20121230 -9606 2096 ESAT - - HGNC:3463|MIM:133250 14 - esterase activator unknown ESAT esterase activator O - 20080828 -9606 2097 ESB3 - - HGNC:3464|MIM:133290 16 - esterase B3 protein-coding ESB3 esterase B3 O - 20100204 -9606 2098 ESD RP11-147L20.1 FGH HGNC:3465|MIM:133280|Ensembl:ENSG00000139684|HPRD:00588|Vega:OTTHUMG00000016878 13 13q14.1-q14.2 esterase D protein-coding ESD esterase D O S-formylglutathione hydrolase|esterase 10|esterase D/formylglutathione hydrolase|methylumbelliferyl-acetate deacetylase 20121230 -9606 2099 ESR1 RP1-130E4.1 ER|ESR|ESRA|Era|NR3A1 HGNC:3467|MIM:133430|Ensembl:ENSG00000091831|HPRD:00589|Vega:OTTHUMG00000016103 6 6q25.1 estrogen receptor 1 protein-coding ESR1 estrogen receptor 1 O ER-alpha|estradiol receptor|estrogen nuclear receptor alpha|estrogen receptor|estrogen receptor alpha 3*,4,5,6,7*/822 isoform|estrogen receptor alpha E1-E2-1-2|estrogen receptor alpha E1-N2-E2-1-2|estrogen receptor alpha delta 3*,4,5,6,7*,8*/941 isoform|estrogen receptor alpha delta 3*,4,5,6,7*/819-2 isoform|estrogen receptor alpha delta 4 +49 isoform|estrogen receptor alpha delta 4*,5,6,7*/654 isoform|estrogen receptor alpha delta 4*,5,6,7,8*/901 isoform|nuclear receptor subfamily 3 group A member 1 20121230 -9606 2100 ESR2 - ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2 HGNC:3468|MIM:601663|Ensembl:ENSG00000140009|HPRD:03390|Vega:OTTHUMG00000141306 14 14q23.2 estrogen receptor 2 (ER beta) protein-coding ESR2 estrogen receptor 2 (ER beta) O estrogen nuclear receptor beta variant a|estrogen nuclear receptor beta variant b|estrogen receptor beta|estrogen receptor beta 4|nuclear receptor subfamily 3 group A member 2 20121230 -9606 2101 ESRRA - ERR1|ERRa|ERRalpha|ESRL1|NR3B1 HGNC:3471|MIM:601998|Ensembl:ENSG00000173153|HPRD:07210|Vega:OTTHUMG00000150641 11 11q13 estrogen-related receptor alpha protein-coding ESRRA estrogen-related receptor alpha O ERR-alpha|estrogen receptor-like 1|estrogen-related nuclear receptor alpha|nuclear receptor subfamily 3 group B member 1|steroid hormone receptor ERR1 20121230 -9606 2103 ESRRB - DFNB35|ERR2|ERRb|ESRL2|NR3B2 HGNC:3473|MIM:602167|Ensembl:ENSG00000119715|HPRD:03700|Vega:OTTHUMG00000160457 14 14q24.3 estrogen-related receptor beta protein-coding ESRRB estrogen-related receptor beta O ERR beta-2|ERR-beta|ERRbeta-2|estrogen receptor-like 2|estrogen-related nuclear receptor beta|nuclear receptor ERRB2|nuclear receptor subfamily 3 group B member 2|orphan nuclear receptor|steroid hormone receptor ERR2 20121230 -9606 2104 ESRRG - ERR3|ERRgamma|NR3B3 HGNC:3474|MIM:602969|Ensembl:ENSG00000196482|HPRD:04274|Vega:OTTHUMG00000037025 1 1q41 estrogen-related receptor gamma protein-coding ESRRG estrogen-related receptor gamma O ERR gamma-2|estrogen receptor-related protein 3|nuclear receptor subfamily 3 group B member 3 20121230 -9606 2107 ETF1 - D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 HGNC:3477|MIM:600285|Ensembl:ENSG00000120705|HPRD:02616|Vega:OTTHUMG00000129199 5 5q31.1 eukaryotic translation termination factor 1 protein-coding ETF1 eukaryotic translation termination factor 1 O eukaryotic peptide chain release factor subunit 1|eukaryotic release factor 1|polypeptide chain release factor 1|protein Cl1|sup45 (yeast omnipotent suppressor 45) homolog-like 1 20121230 -9606 2108 ETFA - EMA|GA2|MADD HGNC:3481|MIM:608053|Ensembl:ENSG00000140374|HPRD:01979|Vega:OTTHUMG00000172586 15 15q23-q25 electron-transfer-flavoprotein, alpha polypeptide protein-coding ETFA electron-transfer-flavoprotein, alpha polypeptide O alpha-ETF|electron transfer flavoprotein alpha-subunit|electron transfer flavoprotein subunit alpha, mitochondrial|electron transfer flavoprotein, alpha polypeptide|glutaric aciduria II 20121230 -9606 2109 ETFB FP585 MADD HGNC:3482|MIM:130410|Ensembl:ENSG00000105379|HPRD:00557 19 19q13.3 electron-transfer-flavoprotein, beta polypeptide protein-coding ETFB electron-transfer-flavoprotein, beta polypeptide O beta-ETF|electron transfer flavoprotein beta subunit|electron transfer flavoprotein beta-subunit|electron transfer flavoprotein subunit beta|electron transfer flavoprotein, beta polypeptide|electron-transferring-flavoprotein, beta polypeptide 20121230 -9606 2110 ETFDH - ETFQO|MADD HGNC:3483|MIM:231675|Ensembl:ENSG00000171503|HPRD:01978|Vega:OTTHUMG00000161684 4 4q32-q35 electron-transferring-flavoprotein dehydrogenase protein-coding ETFDH electron-transferring-flavoprotein dehydrogenase O ETF dehydrogenase|ETF-QO|ETF-ubiquinone oxidoreductase|electron transfer flavoprotein ubiquinone oxidoreductase|electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 20121230 -9606 2112 ETM2 - ETM HGNC:3487|MIM:602134 2 2p25-p22 essential tremor 2 unknown ETM2 essential tremor 2 O - 20120622 -9606 2113 ETS1 - ETS-1|EWSR2 HGNC:3488|MIM:164720|Ensembl:ENSG00000134954|HPRD:01260|Vega:OTTHUMG00000165799 11 11q23.3 v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) protein-coding ETS1 v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) O Avian erythroblastosis virus E26 (v-ets) oncogene homolog-1|ets protein|p54|protein C-ets-1|v-ets avian erythroblastosis virus E2 oncogene homolog 1 20121230 -9606 2114 ETS2 - ETS2IT1 HGNC:3489|MIM:164740|Ensembl:ENSG00000157557|HPRD:01263|Vega:OTTHUMG00000090769 21 21q22.2 v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) protein-coding ETS2 v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) O oncogene ETS-2|protein C-ets-2|v-ets avian erythroblastosis virus E2 oncogene homolog 2|v-ets avian erythroblastosis virus E26 oncogene homolog 2 20121230 -9606 2115 ETV1 - ER81 HGNC:3490|MIM:600541|Ensembl:ENSG00000006468|HPRD:02765|Vega:OTTHUMG00000152403 7 7p21.3 ets variant 1 protein-coding ETV1 ets variant 1 O ETS translocation variant 1|ets variant gene 1|ets-related protein 81 20121230 -9606 2116 ETV2 - ER71|ETSRP71 HGNC:3491|MIM:609358|Ensembl:ENSG00000105672|HPRD:16871|Vega:OTTHUMG00000150545 19 19q13.12 ets variant 2 protein-coding ETV2 ets variant 2 O ETS translocation variant 2|ets variant gene 2|ets-related protein 71 20121230 -9606 2117 ETV3 - METS|PE-1|PE1|bA110J1.4 HGNC:3492|MIM:164873|Ensembl:ENSG00000117036|HPRD:01282|Vega:OTTHUMG00000034298 1 1q21-q23 ets variant 3 protein-coding ETV3 ets variant 3 O ETS domain transcriptional repressor PE1|ETS translocation variant 3|ets variant gene 3, ETS family transcriptional repressor|mitogenic Ets transcriptional suppressor 20121230 -9606 2118 ETV4 - E1A-F|E1AF|PEA3|PEAS3 HGNC:3493|MIM:600711|Ensembl:ENSG00000175832|HPRD:02833|Vega:OTTHUMG00000180884 17 17q21 ets variant 4 protein-coding ETV4 ets variant 4 O ETS translocation variant 4|EWS protein/E1A enhancer binding protein chimera|adenovirus E1A enhancer-binding protein|ets variant gene 4 (E1A enhancer-binding protein, E1AF)|polyomavirus enhancer activator 3 homolog 20121230 -9606 2119 ETV5 - ERM HGNC:3494|MIM:601600|Ensembl:ENSG00000244405|HPRD:09035|Vega:OTTHUMG00000156639 3 3q28 ets variant 5 protein-coding ETV5 ets variant 5 O ETS translocation variant 5|ets-related molecule|ets-related protein ERM 20121230 -9606 2120 ETV6 - TEL|TEL/ABL HGNC:3495|MIM:600618|Ensembl:ENSG00000139083|HPRD:15976|Vega:OTTHUMG00000168538 12 12p13 ets variant 6 protein-coding ETV6 ets variant 6 O ETS translocation variant 6|ETS-related protein Tel1|TEL1 oncogene|ets variant gene 6 (TEL oncogene)|transcription factor ETV6 20121230 -9606 2121 EVC - DWF-1|EVC1|EVCL HGNC:3497|MIM:604831|Ensembl:ENSG00000072840|HPRD:05319|Vega:OTTHUMG00000090427 4 4p16 Ellis van Creveld syndrome protein-coding EVC Ellis van Creveld syndrome O ellis-van Creveld syndrome protein 20121230 -9606 2122 MECOM hCG_1640438 AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 HGNC:3498|MIM:165215|Ensembl:ENSG00000085276|HPRD:01310|Vega:OTTHUMG00000158596 3 3q26 MDS1 and EVI1 complex locus protein-coding MECOM MDS1 and EVI1 complex locus O AML1-EVI-1 fusion protein|MDS1 and EVI1 complex locus protein EVI1|MDS1 and EVI1 complex locus protein MDS1|ecotropic virus integration site 1 protein homolog|myelodysplasia syndrome-associated protein 1|oncogene EVI1|zinc finger protein Evi1 20121230 -9606 2123 EVI2A - EVDA|EVI-2A|EVI2 HGNC:3499|MIM:158380|Ensembl:ENSG00000126860|HPRD:08866|Vega:OTTHUMG00000159306 17 17q11.2 ecotropic viral integration site 2A protein-coding EVI2A ecotropic viral integration site 2A O ecotropic viral integration site 2A protein homolog|protein EVI2A 20121230 -9606 2124 EVI2B - CD361|D17S376|EVDB HGNC:3500|MIM:158381|Ensembl:ENSG00000185862|HPRD:08867|Vega:OTTHUMG00000132869 17 17q11.2 ecotropic viral integration site 2B protein-coding EVI2B ecotropic viral integration site 2B O EVI-2B|ecotropic viral integration site 2B protein homolog|protein EVI2B 20121230 -9606 2125 EVPL - EVPK HGNC:3503|MIM:601590|Ensembl:ENSG00000167880|HPRD:03352|Vega:OTTHUMG00000180053 17 17q25 envoplakin protein-coding EVPL envoplakin O 210 kDa cornified envelope precursor protein|210 kDa paraneoplastic pemphigus antigen|p210 20121230 -9606 2128 EVX1 - - HGNC:3506|MIM:142996|Ensembl:ENSG00000106038|HPRD:00876|Vega:OTTHUMG00000023093 7 7p15.2 even-skipped homeobox 1 protein-coding EVX1 even-skipped homeobox 1 O EVX-1|eve, even-skipped homeo box homolog 1|eve, even-skipped homeobox homolog 1|even-skipped homeo box 1 (homolog of Drosophila)|homeobox even-skipped homolog protein 1 20121230 -9606 2130 EWSR1 AC002059.7 EWS|bK984G1.4 HGNC:3508|MIM:133450|Ensembl:ENSG00000182944|HPRD:00592|Vega:OTTHUMG00000151107 22 22q12.2 Ewing sarcoma breakpoint region 1 protein-coding EWSR1 Ewing sarcoma breakpoint region 1 O Ewings sarcoma EWS-Fli1 (type 1) oncogene|RNA-binding protein EWS 20121230 -9606 2131 EXT1 - EXT|LGCR|LGS|TRPS2|TTV HGNC:3512|MIM:608177|Ensembl:ENSG00000182197|HPRD:00598|Vega:OTTHUMG00000059718 8 8q24.11 exostosin 1 protein-coding EXT1 exostosin 1 O Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N- acetylglucosaminyltransferase|Langer-Giedion syndrome chromosome region|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase|exostoses (multiple) 1|exostosin-1|glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase|multiple exostoses protein 1|putative tumor suppressor protein EXT1 20121230 -9606 2132 EXT2 - SOTV HGNC:3513|MIM:608210|Ensembl:ENSG00000151348|HPRD:00599|Vega:OTTHUMG00000166498 11 11p12-p11 exostosin 2 protein-coding EXT2 exostosin 2 O N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase|exostosin-2|glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase|multiple exostoses protein 2|putative tumor suppressor protein EXT2 20121230 -9606 2133 EXT3 - EXT2 HGNC:3514|MIM:600209 19 19p exostoses (multiple) 3 unknown EXT3 exostoses (multiple) 3 O - 20120622 -9606 2134 EXTL1 - EXTL HGNC:3515|MIM:601738|Ensembl:ENSG00000158008|HPRD:03441|Vega:OTTHUMG00000007509 1 1p36.1 exostoses (multiple)-like 1 protein-coding EXTL1 exostoses (multiple)-like 1 O alpha-N-acetylglucosaminyltransferase II|exostosin-L|exostosin-like 1|glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N- acetylglucosaminyltransferase|glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase|glucuronyl-N-acetylglucosaminylproteoglycan alpha-1,4-N- acetylglucosaminyltransferase|multiple exostosis-like protein 20121230 -9606 2135 EXTL2 - EXTR2 HGNC:3516|MIM:602411|Ensembl:ENSG00000162694|HPRD:03876|Vega:OTTHUMG00000011814 1 1p21 exostoses (multiple)-like 2 protein-coding EXTL2 exostoses (multiple)-like 2 O EXT-related protein 2|alpha-1,4-N-acetylhexosaminyltransferase EXTL2|alpha-GalNAcT EXTL2|exostosin-like 2|glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase|processed exostosin-like 2 20121230 -9606 2137 EXTL3 - BOTV|EXTR1|REGR|RPR HGNC:3518|MIM:605744|Ensembl:ENSG00000012232|HPRD:09306|Vega:OTTHUMG00000102146 8 8p21 exostoses (multiple)-like 3 protein-coding EXTL3 exostoses (multiple)-like 3 O EXT-related 1|exostosin tumor-like 3|exostosin-like 3|glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase|hereditary multiple exostoses gene isolog|putative tumor suppressor protein EXTL3|reg receptor 20121230 -9606 2138 EYA1 - BOP|BOR|BOS1 HGNC:3519|MIM:601653|Ensembl:ENSG00000104313|HPRD:03388|Vega:OTTHUMG00000149894 8 8q13.3 eyes absent homolog 1 (Drosophila) protein-coding EYA1 eyes absent homolog 1 (Drosophila) O eyes absent homolog 1 20121230 -9606 2139 EYA2 RP5-890O15.2 EAB1 HGNC:3520|MIM:601654|Ensembl:ENSG00000064655|HPRD:09041|Vega:OTTHUMG00000033041 20 20q13.1 eyes absent homolog 2 (Drosophila) protein-coding EYA2 eyes absent homolog 2 (Drosophila) O eyes absent homolog 2 20121230 -9606 2140 EYA3 RP11-460I13.4 - HGNC:3521|MIM:601655|Ensembl:ENSG00000158161|HPRD:09042|Vega:OTTHUMG00000003916 1 1p36 eyes absent homolog 3 (Drosophila) protein-coding EYA3 eyes absent homolog 3 (Drosophila) O eyes absent 3|eyes absent homolog 3 20121230 -9606 2141 EYCL1 - GEY HGNC:3523 19 - eye color 1 (green/blue) unknown EYCL1 eye color 1 (green/blue) O - 20111201 -9606 2145 EZH1 - KMT6B HGNC:3526|MIM:601674|Ensembl:ENSG00000108799|HPRD:03397|Vega:OTTHUMG00000180645 17 17q21.1-q21.3 enhancer of zeste homolog 1 (Drosophila) protein-coding EZH1 enhancer of zeste homolog 1 (Drosophila) O ENX-2|histone-lysine N-methyltransferase EZH1 20121230 -9606 2146 EZH2 - ENX-1|ENX1|EZH1|KMT6|KMT6A|WVS2 HGNC:3527|MIM:601573|Ensembl:ENSG00000106462|HPRD:03342|Vega:OTTHUMG00000158973 7 7q35-q36 enhancer of zeste homolog 2 (Drosophila) protein-coding EZH2 enhancer of zeste homolog 2 (Drosophila) O histone-lysine N-methyltransferase EZH2|lysine N-methyltransferase 6 20121230 -9606 2147 F2 - PT|RPRGL2|THPH1 HGNC:3535|MIM:176930|Ensembl:ENSG00000180210|HPRD:01488|Vega:OTTHUMG00000150344 11 11p11 coagulation factor II (thrombin) protein-coding F2 coagulation factor II (thrombin) O prothrombin|prothrombin B-chain|serine protease 20121230 -9606 2149 F2R - CF2R|HTR|PAR-1|PAR1|TR HGNC:3537|MIM:187930|Ensembl:ENSG00000181104|HPRD:01763|Vega:OTTHUMG00000131299 5 5q13 coagulation factor II (thrombin) receptor protein-coding F2R coagulation factor II (thrombin) receptor O protease-activated receptor 1|proteinase-activated receptor 1 20121230 -9606 2150 F2RL1 - GPR11|PAR2 HGNC:3538|MIM:600933|Ensembl:ENSG00000164251|HPRD:02960|Vega:OTTHUMG00000102118 5 5q13 coagulation factor II (thrombin) receptor-like 1 protein-coding F2RL1 coagulation factor II (thrombin) receptor-like 1 O G-protein coupled receptor 11|coagulation factor II receptor-like 1|protease-activated receptor 2|proteinase-activated receptor 2|thrombin receptor-like 1 20121230 -9606 2151 F2RL2 - PAR-3|PAR3 HGNC:3539|MIM:601919|Ensembl:ENSG00000164220|HPRD:03561|Vega:OTTHUMG00000102119 5 5q13 coagulation factor II (thrombin) receptor-like 2 protein-coding F2RL2 coagulation factor II (thrombin) receptor-like 2 O Coagulation factor II receptor-like 2 (protease-actovated receptor 3)|protease-activated receptor 3|proteinase-activated receptor 3|proteinase-activated receptor-3|thrombin receptor-like 2 20121230 -9606 2152 F3 - CD142|TF|TFA HGNC:3541|MIM:134390|Ensembl:ENSG00000117525|HPRD:00603|Vega:OTTHUMG00000010716 1 1p22-p21 coagulation factor III (thromboplastin, tissue factor) protein-coding F3 coagulation factor III (thromboplastin, tissue factor) O tissue factor 20121230 -9606 2153 F5 - FVL|PCCF|RPRGL1|THPH2 HGNC:3542|MIM:612309|Ensembl:ENSG00000198734|HPRD:01964|Vega:OTTHUMG00000034595 1 1q23 coagulation factor V (proaccelerin, labile factor) protein-coding F5 coagulation factor V (proaccelerin, labile factor) O activated protein c cofactor|coagulation factor V|coagulation factor V jinjiang A2 domain|factor V Leiden|proaccelerin, labile factor 20121230 -9606 2155 F7 - SPCA HGNC:3544|MIM:613878|Ensembl:ENSG00000057593|HPRD:01965|Vega:OTTHUMG00000017373 13 13q34 coagulation factor VII (serum prothrombin conversion accelerator) protein-coding F7 coagulation factor VII (serum prothrombin conversion accelerator) O FVII coagulation protein|coagulation factor VII|eptacog alfa|proconvertin 20121230 -9606 2156 F7R - F7E HGNC:3545|MIM:134450 8 8p23.2-p23.1 coagulation factor VII regulator unknown F7R coagulation factor VII regulator O - 20080828 -9606 2157 F8 RP11-115M6.7 AHF|DXS1253E|F8B|F8C|FVIII|HEMA HGNC:3546|MIM:300841|Ensembl:ENSG00000185010|HPRD:02384|Vega:OTTHUMG00000022688 X Xq28 coagulation factor VIII, procoagulant component protein-coding F8 coagulation factor VIII, procoagulant component O antihemophilic factor|coagulation factor VIII|coagulation factor VIIIc|factor VIII F8B 20121230 -9606 2158 F9 RP6-88D7.1 FIX|HEMB|P19|PTC|THPH8 HGNC:3551|MIM:300746|Ensembl:ENSG00000101981|HPRD:02385|Vega:OTTHUMG00000022536 X Xq27.1-q27.2 coagulation factor IX protein-coding F9 coagulation factor IX O Christmas factor|F9 p22|FIX F9|factor 9|factor IX F9|plasma thromboplastic component|plasma thromboplastin component 20121230 -9606 2159 F10 RP11-98F14.9 FX|FXA HGNC:3528|MIM:613872|Ensembl:ENSG00000126218|HPRD:01966|Vega:OTTHUMG00000017374 13 13q34 coagulation factor X protein-coding F10 coagulation factor X O Stuart-Prower factor|factor Xa|prothrombinase 20121230 -9606 2160 F11 - FXI HGNC:3529|MIM:264900|Ensembl:ENSG00000088926|HPRD:07524|Vega:OTTHUMG00000150311 4 4q35 coagulation factor XI protein-coding F11 coagulation factor XI O PTA|plasma thromboplastin antecedent 20121230 -9606 2161 F12 - HAE3|HAEX|HAF HGNC:3530|MIM:610619|Ensembl:ENSG00000131187|HPRD:01992|Vega:OTTHUMG00000163403 5 5q33-qter coagulation factor XII (Hageman factor) protein-coding F12 coagulation factor XII (Hageman factor) O Hageman factor|beta-factor XIIa part 1|beta-factor XIIa part 2|coagulation factor XII|coagulation factor XIIa heavy chain|coagulation factor XIIa light chain 20121230 -9606 2162 F13A1 RP11-232H4.1 F13A HGNC:3531|MIM:134570|Ensembl:ENSG00000124491|HPRD:00604|Vega:OTTHUMG00000014186 6 6p25.3-p24.3 coagulation factor XIII, A1 polypeptide protein-coding F13A1 coagulation factor XIII, A1 polypeptide O FSF, A subunit|TGase|bA525O21.1 (coagulation factor XIII, A1 polypeptide)|coagulation factor XIII A chain|coagulation factor XIII, A polypeptide|coagulation factor XIIIa|factor XIIIa|fibrin stabilizing factor, A subunit|fibrinoligase|protein-glutamine gamma-glutamyltransferase A chain|transglutaminase A chain|transglutaminase. plasma 20121230 -9606 2165 F13B - FXIIIB HGNC:3534|MIM:134580|Ensembl:ENSG00000143278|HPRD:00605|Vega:OTTHUMG00000036519 1 1q31-q32.1 coagulation factor XIII, B polypeptide protein-coding F13B coagulation factor XIII, B polypeptide O TGase|coagulation factor XIII B chain|fibrin-stabilizing factor B subunit|protein-glutamine gamma-glutamyltransferase B chain|transglutaminase B chain 20121230 -9606 2166 FAAH - FAAH-1 HGNC:3553|MIM:602935|Ensembl:ENSG00000117480|HPRD:04244|Vega:OTTHUMG00000007811 1 1p35-p34 fatty acid amide hydrolase protein-coding FAAH fatty acid amide hydrolase O anandamide amidohydrolase 1|fatty-acid amide hydrolase 1|oleamide hydrolase 1 20121230 -9606 2167 FABP4 - A-FABP|AFABP|ALBP|aP2 HGNC:3559|MIM:600434|Ensembl:ENSG00000170323|HPRD:02698|Vega:OTTHUMG00000164602 8 8q21 fatty acid binding protein 4, adipocyte protein-coding FABP4 fatty acid binding protein 4, adipocyte O adipocyte lipid-binding protein|adipocyte-type fatty acid-binding protein|fatty acid-binding protein 4|fatty acid-binding protein, adipocyte 20121230 -9606 2168 FABP1 - FABPL|L-FABP HGNC:3555|MIM:134650|Ensembl:ENSG00000163586|HPRD:00612|Vega:OTTHUMG00000130312 2 2p11 fatty acid binding protein 1, liver protein-coding FABP1 fatty acid binding protein 1, liver O fatty acid-binding protein 1|fatty acid-binding protein, liver|liver-type fatty acid-binding protein 20121230 -9606 2169 FABP2 - FABPI|I-FABP HGNC:3556|MIM:134640|Ensembl:ENSG00000145384|HPRD:00611|Vega:OTTHUMG00000132972 4 4q28-q31 fatty acid binding protein 2, intestinal protein-coding FABP2 fatty acid binding protein 2, intestinal O fatty acid-binding protein 2|fatty acid-binding protein, intestinal|intestinal-type fatty acid-binding protein 20121230 -9606 2170 FABP3 - FABP11|H-FABP|M-FABP|MDGI|O-FABP HGNC:3557|MIM:134651|Ensembl:ENSG00000121769|HPRD:00613|Vega:OTTHUMG00000003797 1 1p33-p32 fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) protein-coding FABP3 fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) O Fatty acid-binding protein 3, muscle|fatty acid binding protein 11|fatty acid-binding protein, heart|heart-type fatty acid-binding protein|mammary-derived growth inhibitor|muscle fatty acid-binding protein 20121230 -9606 2171 FABP5 - E-FABP|EFABP|KFABP|PA-FABP|PAFABP HGNC:3560|MIM:605168|Ensembl:ENSG00000164687|HPRD:05524|Vega:OTTHUMG00000134313 8 8q21.13 fatty acid binding protein 5 (psoriasis-associated) protein-coding FABP5 fatty acid binding protein 5 (psoriasis-associated) O epidermal-type fatty acid-binding protein|fatty acid-binding protein, epidermal|psoriasis-associated fatty acid-binding protein homolog 20121230 -9606 2172 FABP6 - I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP HGNC:3561|MIM:600422|Ensembl:ENSG00000170231|HPRD:02689|Vega:OTTHUMG00000130329 5 5q33.3-q34 fatty acid binding protein 6, ileal protein-coding FABP6 fatty acid binding protein 6, ileal O GT|gastrotropin|ileal bile acid binding protein|ileal lipid-binding protein|illeal lipid-binding protein|intestinal 15 kDa protein 20121230 -9606 2173 FABP7 RP11-548E19.1 B-FABP|BLBP|FABPB|MRG HGNC:3562|MIM:602965|Ensembl:ENSG00000164434|HPRD:04271|Vega:OTTHUMG00000015489 6 6q22-q23 fatty acid binding protein 7, brain protein-coding FABP7 fatty acid binding protein 7, brain O brain lipid binding protein|brain lipid-binding protein|brain-type fatty acid-binding protein|fatty acid-binding protein 7|fatty acid-binding protein, brain|mammary-derived growth inhibitor related|mammary-derived growth inhibitor-related 20121230 -9606 2175 FANCA - FA|FA-H|FA1|FAA|FACA|FAH|FANCH HGNC:3582|MIM:607139|Ensembl:ENSG00000187741|HPRD:06186|Vega:OTTHUMG00000173049 16 16q24.3 Fanconi anemia, complementation group A protein-coding FANCA Fanconi anemia, complementation group A O Fanconi anemia group A protein|Fanconi anemia, complementation group H|Fanconi anemia, type 1 20121230 -9606 2176 FANCC RP11-80I15.2 FA3|FAC|FACC HGNC:3584|MIM:613899|Ensembl:ENSG00000158169|HPRD:01967|Vega:OTTHUMG00000020279 9 9q22.3 Fanconi anemia, complementation group C protein-coding FANCC Fanconi anemia, complementation group C O Fanconi anemia group C protein 20121230 -9606 2177 FANCD2 - FA-D2|FA4|FACD|FAD|FAD2|FANCD HGNC:3585|MIM:613984|Ensembl:ENSG00000144554|HPRD:01968|Vega:OTTHUMG00000128670 3 3p26 Fanconi anemia, complementation group D2 protein-coding FANCD2 Fanconi anemia, complementation group D2 O Fanconi anemia group D2 protein 20121230 -9606 2178 FANCE - FACE|FAE HGNC:3586|MIM:613976|Ensembl:ENSG00000112039|HPRD:02943|Vega:OTTHUMG00000014565 6 6p22-p21 Fanconi anemia, complementation group E protein-coding FANCE Fanconi anemia, complementation group E O Fanconi anemia group E protein 20121230 -9606 2180 ACSL1 - ACS1|FACL1|FACL2|LACS|LACS1|LACS2 HGNC:3569|MIM:152425|Ensembl:ENSG00000151726|HPRD:01068|Vega:OTTHUMG00000160547 4 4q35 acyl-CoA synthetase long-chain family member 1 protein-coding ACSL1 acyl-CoA synthetase long-chain family member 1 O LACS 1|LACS 2|acyl-CoA synthetase 1|fatty-acid-Coenzyme A ligase, long-chain 1|fatty-acid-Coenzyme A ligase, long-chain 2|lignoceroyl-CoA synthase|long-chain acyl-CoA synthetase 1|long-chain acyl-CoA synthetase 2|long-chain fatty acid-CoA ligase 2|long-chain fatty-acid-coenzyme A ligase 1|long-chain-fatty-acid--CoA ligase 1|palmitoyl-CoA ligase 1|palmitoyl-CoA ligase 2|paltimoyl-CoA ligase 1 20121230 -9606 2181 ACSL3 - ACS3|FACL3|PRO2194 HGNC:3570|MIM:602371|Ensembl:ENSG00000123983|HPRD:03845|Vega:OTTHUMG00000133160 2 2q34-q35 acyl-CoA synthetase long-chain family member 3 protein-coding ACSL3 acyl-CoA synthetase long-chain family member 3 O LACS 3|fatty-acid-Coenzyme A ligase, long-chain 3|lignoceroyl-CoA synthase|long-chain acyl-CoA synthetase 3|long-chain-fatty-acid--CoA ligase 3 20121230 -9606 2182 ACSL4 - ACS4|FACL4|LACS4|MRX63|MRX68 HGNC:3571|MIM:300157|Ensembl:ENSG00000068366|HPRD:02152|Vega:OTTHUMG00000022190 X Xq22.3-q23 acyl-CoA synthetase long-chain family member 4 protein-coding ACSL4 acyl-CoA synthetase long-chain family member 4 O LACS 4|acyl-CoA synthetase 4|fatty-acid-Coenzyme A ligase, long-chain 4|lignoceroyl-CoA synthase|long-chain acyl-CoA synthetase 4|long-chain fatty-acid-Coenzyme A ligase 4|long-chain-fatty-acid--CoA ligase 4 20121230 -9606 2184 FAH - - HGNC:3579|MIM:613871|Ensembl:ENSG00000103876|HPRD:02040|Vega:OTTHUMG00000144187 15 15q25.1 fumarylacetoacetate hydrolase (fumarylacetoacetase) protein-coding FAH fumarylacetoacetate hydrolase (fumarylacetoacetase) O FAA|beta-diketonase|fumarylacetoacetase 20121230 -9606 2185 PTK2B - CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK HGNC:9612|MIM:601212|Ensembl:ENSG00000120899|HPRD:03131|Vega:OTTHUMG00000102082 8 8p21.1 PTK2B protein tyrosine kinase 2 beta protein-coding PTK2B PTK2B protein tyrosine kinase 2 beta O CAK-beta|FADK 2|calcium-dependent tyrosine kinase|calcium-regulated non-receptor proline-rich tyrosine kinase|cell adhesion kinase beta|focal adhesion kinase 2|proline-rich tyrosine kinase 2|protein kinase B|protein-tyrosine kinase 2-beta|related adhesion focal tyrosine kinase 20121230 -9606 2186 BPTF - FAC1|FALZ|NURF301 HGNC:3581|MIM:601819|Ensembl:ENSG00000171634|HPRD:03490|Vega:OTTHUMG00000132254 17 17q24.3 bromodomain PHD finger transcription factor protein-coding BPTF bromodomain PHD finger transcription factor O bromodomain and PHD domain transcription factor|bromodomain and PHD finger-containing transcription factor|fetal Alz-50 clone 1 protein|fetal Alz-50 reactive clone 1|fetal Alzheimer antigen|nucleosome remodeling factor, large subunit|nucleosome-remodeling factor subunit BPTF 20121230 -9606 2187 FANCB - FA2|FAAP90|FAAP95|FAB|FACB HGNC:3583|MIM:300515|Ensembl:ENSG00000181544|HPRD:06557|Vega:OTTHUMG00000021168 X Xp22.2 Fanconi anemia, complementation group B protein-coding FANCB Fanconi anemia, complementation group B O Fanconi anemia group B protein|Fanconi anemia-associated polypeptide of 95 kDa 20121230 -9606 2188 FANCF - FAF HGNC:3587|MIM:613897|Ensembl:ENSG00000183161|HPRD:04589|Vega:OTTHUMG00000166070 11 11p15 Fanconi anemia, complementation group F protein-coding FANCF Fanconi anemia, complementation group F O Fanconi anemia group F protein 20121230 -9606 2189 FANCG - FAG|XRCC9 HGNC:3588|MIM:602956|Ensembl:ENSG00000221829|HPRD:04262|Vega:OTTHUMG00000019850 9 9p13 Fanconi anemia, complementation group G protein-coding FANCG Fanconi anemia, complementation group G O DNA repair protein XRCC9|Fanconi anemia group G protein|X-ray repair complementing defective repair in Chinese hamster cells 9|X-ray repair, complementing defective, in Chinese hamster, 9 20121230 -9606 2191 FAP - DPPIV|FAPA HGNC:3590|MIM:600403|Ensembl:ENSG00000078098|HPRD:02674|Vega:OTTHUMG00000153890 2 2q23 fibroblast activation protein, alpha protein-coding FAP fibroblast activation protein, alpha O 170 kDa melanoma membrane-bound gelatinase|integral membrane serine protease|seprase 20121230 -9606 2192 FBLN1 CTA-941F9.7 FBLN|FIBL1 HGNC:3600|MIM:135820|Ensembl:ENSG00000077942|HPRD:00629|Vega:OTTHUMG00000151340 22 22q13.31 fibulin 1 protein-coding FBLN1 fibulin 1 O fibulin-1 20121230 -9606 2193 FARSA - CML33|FARSL|FARSLA|FRSA|PheHA HGNC:3592|MIM:602918|Ensembl:ENSG00000179115|HPRD:04227|Vega:OTTHUMG00000180569 19 19p13.2 phenylalanyl-tRNA synthetase, alpha subunit protein-coding FARSA phenylalanyl-tRNA synthetase, alpha subunit O pheRS|phenylalanine tRNA ligase 1, alpha, cytoplasmic|phenylalanine--tRNA ligase alpha chain|phenylalanine--tRNA ligase alpha subunit|phenylalanine-tRNA synthetase alpha-subunit|phenylalanine-tRNA synthetase-like, alpha subunit|phenylalanyl-tRNA synthetase alpha chain|phenylalanyl-tRNA synthetase-like, alpha subunit 20121230 -9606 2194 FASN - FAS|OA-519|SDR27X1 HGNC:3594|MIM:600212|Ensembl:ENSG00000169710|HPRD:02567|Vega:OTTHUMG00000178527 17 17q25 fatty acid synthase protein-coding FASN fatty acid synthase O short chain dehydrogenase/reductase family 27X, member 1 20121230 -9606 2195 FAT1 - CDHF7|CDHR8|FAT|ME5|hFat1 HGNC:3595|MIM:600976|Ensembl:ENSG00000083857|HPRD:02986|Vega:OTTHUMG00000160320 4 4q35 FAT tumor suppressor homolog 1 (Drosophila) protein-coding FAT1 FAT tumor suppressor homolog 1 (Drosophila) O FAT tumor suppressor 1|cadherin ME5|cadherin family member 7|cadherin-related family member 8|cadherin-related tumor suppressor homolog|protein fat homolog|protocadherin Fat 1 20121230 -9606 2196 FAT2 - CDHF8|CDHR9|HFAT2|MEGF1 HGNC:3596|MIM:604269|Ensembl:ENSG00000086570|HPRD:05041|Vega:OTTHUMG00000130126 5 5q33.1 FAT tumor suppressor homolog 2 (Drosophila) protein-coding FAT2 FAT tumor suppressor homolog 2 (Drosophila) O cadherin family member 8|cadherin-related family member 9|multiple EGF-like domains protein 1|multiple epidermal growth factor-like domains 1|multiple epidermal growth factor-like domains protein 1|protocadherin FAT2|protocadherin Fat 2 20121230 -9606 2197 FAU - FAU1|Fub1|Fubi|MNSFbeta|RPS30|S30|asr1 HGNC:3597|MIM:134690|Ensembl:ENSG00000149806|HPRD:00002|Vega:OTTHUMG00000165606 11 11q13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed protein-coding FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed O 40S ribosomal protein S30|FAU-encoded ubiquitin-like protein|FBR-MuSV-associated ubiquitously expressed|Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)|monoclonal nonspecific suppressor factor beta|ribosomal protein S30|ubiquitin-like protein fubi and ribosomal protein S30|ubiquitin-like-S30 fusion protein 20121230 -9606 2199 FBLN2 - - HGNC:3601|MIM:135821|Ensembl:ENSG00000163520|HPRD:00630|Vega:OTTHUMG00000155437 3 3p25.1 fibulin 2 protein-coding FBLN2 fibulin 2 O FIBL-2|fibulin-2 20121230 -9606 2200 FBN1 - ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 HGNC:3603|MIM:134797|Ensembl:ENSG00000166147|HPRD:00618|Vega:OTTHUMG00000172218 15 15q21.1 fibrillin 1 protein-coding FBN1 fibrillin 1 O fibrillin 15|fibrillin-1 20121230 -9606 2201 FBN2 - CCA|DA9 HGNC:3604|MIM:612570|Ensembl:ENSG00000138829|HPRD:00416|Vega:OTTHUMG00000163082 5 5q23-q31 fibrillin 2 protein-coding FBN2 fibrillin 2 O fibrillin 5|fibrillin-2 20121230 -9606 2202 EFEMP1 - DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 HGNC:3218|MIM:601548|Ensembl:ENSG00000115380|HPRD:03331|Vega:OTTHUMG00000129343 2 2p16 EGF containing fibulin-like extracellular matrix protein 1 protein-coding EFEMP1 EGF containing fibulin-like extracellular matrix protein 1 O EGF-containing fibulin-like extracellular matrix protein 1|extracellular protein S1-5|fibulin-3 20121230 -9606 2203 FBP1 RP11-342C23.1 FBP HGNC:3606|MIM:611570|Ensembl:ENSG00000165140|HPRD:01973|Vega:OTTHUMG00000020268 9 9q22.3 fructose-1,6-bisphosphatase 1 protein-coding FBP1 fructose-1,6-bisphosphatase 1 O D-fructose-1,6-bisphosphate 1-phosphohydrolase 1|FBPase 1|fructose-bisphosphatase 1|growth-inhibiting protein 17 20121230 -9606 2204 FCAR XXbac-BCX195L8.9 CD89 HGNC:3608|MIM:147045|Ensembl:ENSG00000186431|HPRD:00914|Vega:OTTHUMG00000065936 19 19q13.42 Fc fragment of IgA, receptor for protein-coding FCAR Fc fragment of IgA, receptor for O Fc alpha receptor|IgA Fc receptor|immunoglobulin alpha Fc receptor 20121230 -9606 2205 FCER1A RP11-550P17.3 FCE1A|FcERI HGNC:3609|MIM:147140|Ensembl:ENSG00000179639|HPRD:00917|Vega:OTTHUMG00000037176 1 1q23 Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide protein-coding FCER1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide O Fc IgE receptor, alpha polypeptide|Fc epsilon RI alpha-chain|Fc-epsilon RI-alpha|high affinity immunoglobulin epsilon receptor alpha-subunit|high affinity immunoglobulin epsilon receptor subunit alpha|igE Fc receptor subunit alpha|immunoglobulin E receptor, high-affinity, of mast cells, alpha polypeptide 20121230 -9606 2206 MS4A2 - APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 HGNC:7316|MIM:147138|Ensembl:ENSG00000149534|HPRD:00915|Vega:OTTHUMG00000167239 11 11q12-q13 membrane-spanning 4-domains, subfamily A, member 2 protein-coding MS4A2 membrane-spanning 4-domains, subfamily A, member 2 O Fc fragment of IgE, high affinity I, receptor for; beta polypeptide|High affinity immunoglobulin epsilon receptor beta-subunit (FcERI) (IgE Fc receptor, beta-subunit) (Fc epsilon receptor I beta-chain)|high affinity IgE receptor beta subunit|high affinity immunoglobulin epsilon receptor subunit beta|igE Fc receptor subunit beta|immunoglobulin E receptor, high affinity, beta polypeptide 20121230 -9606 2207 FCER1G - FCRG HGNC:3611|MIM:147139|Ensembl:ENSG00000158869|HPRD:00916|Vega:OTTHUMG00000034343 1 1q23 Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide protein-coding FCER1G Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide O Fc receptor gamma-chain|fc-epsilon RI-gamma|fcRgamma|fceRI gamma|high affinity immunoglobulin epsilon receptor subunit gamma|immunoglobulin E receptor, high affinity, gamma chain 20121230 -9606 2208 FCER2 - CD23|CD23A|CLEC4J|FCE2|IGEBF HGNC:3612|MIM:151445|Ensembl:ENSG00000104921|HPRD:01049 19 19p13.3 Fc fragment of IgE, low affinity II, receptor for (CD23) protein-coding FCER2 Fc fragment of IgE, low affinity II, receptor for (CD23) O BLAST-2|C-type lectin domain family 4, member J|CD23 antigen|fc-epsilon-RII|immunoglobulin E-binding factor|low affinity immunoglobulin epsilon Fc receptor|lymphocyte IgE receptor 20121230 -9606 2209 FCGR1A RP11-196G18.2 CD64|CD64A|FCRI|IGFR1 HGNC:3613|MIM:146760|Ensembl:ENSG00000150337|HPRD:00904|Vega:OTTHUMG00000012089 1 1q21.2-q21.3 Fc fragment of IgG, high affinity Ia, receptor (CD64) protein-coding FCGR1A Fc fragment of IgG, high affinity Ia, receptor (CD64) O Fc fragment of IgG, high affinity Ia, receptor for (CD64)|Fc gamma receptor|Fc-gamma RI|Fc-gamma receptor I A1|IgG Fc receptor I|fc-gamma RIA|fcgammaRIa|high affinity immunoglobulin gamma Fc receptor I 20121230 -9606 2210 FCGR1B RP11-439A17.1 CD64b|IGFRB HGNC:3614|MIM:601502|Ensembl:ENSG00000198019|HPRD:14225|Vega:OTTHUMG00000040903 1 1p11.2 Fc fragment of IgG, high affinity Ib, receptor (CD64) protein-coding FCGR1B Fc fragment of IgG, high affinity Ib, receptor (CD64) O Fc-gamma receptor I B2|fc-gamma RIB|fcRIB|hFcgammaRIB|high affinity immunoglobulin gamma Fc receptor IB|igG Fc receptor IB 20121230 -9606 2212 FCGR2A RP11-5K23.6 CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 HGNC:3616|MIM:146790|Ensembl:ENSG00000143226|HPRD:00906|Vega:OTTHUMG00000034469 1 1q23 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32) O Immunoglobulin G Fc receptor II|fc-gamma RII-a|fc-gamma-RIIa|fcRII-a|igG Fc receptor II-a|low affinity immunoglobulin gamma Fc region receptor II-a 20121230 -9606 2213 FCGR2B RP11-474I16.2 CD32|CD32B|FCG2|FCGR2|IGFR2 HGNC:3618|MIM:604590|Ensembl:ENSG00000072694|HPRD:06849|Vega:OTTHUMG00000034470 1 1q23 Fc fragment of IgG, low affinity IIb, receptor (CD32) protein-coding FCGR2B Fc fragment of IgG, low affinity IIb, receptor (CD32) O CDw32|Fc fragment of IgG, low affinity II, receptor for (CD32)|Fc fragment of IgG, low affinity IIb, receptor for (CD32)|Fc gamma RIIb|fc-gamma RII-b|fc-gamma-RIIb|fcRII-b|igG Fc receptor II-b|low affinity immunoglobulin gamma Fc region receptor II-b 20121230 -9606 2214 FCGR3A RP11-5K23.1 CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3 HGNC:3619|MIM:146740|Ensembl:ENSG00000203747|HPRD:00903|Vega:OTTHUMG00000034466 1 1q23 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) protein-coding FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a) O CD16a antigen|Fc fragment of IgG, low affinity III, receptor for (CD16)|Fc gamma receptor III-A|Fc-gamma RIII-alpha|Fc-gamma RIIIa|Fc-gamma receptor III-2 (CD 16)|Fc-gamma receptor IIIb (CD16)|FcgammaRIIIA|fc-gamma RIII|igG Fc receptor III-2|immunoglobulin G Fc receptor III|low affinity immunoglobulin gamma Fc region receptor III-A|neutrophil-specific antigen NA 20121230 -9606 2215 FCGR3B RP11-25K21.3 CD16|CD16b|FCG3|FCGR3|FCR-10|FCRIII|FCRIIIb HGNC:3620|MIM:610665|Ensembl:ENSG00000162747|HPRD:09951|Vega:OTTHUMG00000074099 1 1q23 Fc fragment of IgG, low affinity IIIb, receptor (CD16b) protein-coding FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b) O Fc fragment of IgG, low affinity IIIb, receptor for (CD16)|Fc-gamma receptor IIIb (CD 16)|fc-gamma RIII|fc-gamma RIII-beta|fc-gamma RIIIb|igG Fc receptor III-1|low affinity immunoglobulin gamma Fc region receptor III-B 20121230 -9606 2216 FDX1P2 - FDXP2 HGNC:3641 21 21q21.3 ferredoxin 1 pseudogene 2 pseudo FDX1P2 ferredoxin 1 pseudogene 2 O - 20121230 -9606 2217 FCGRT - FCRN|alpha-chain HGNC:3621|MIM:601437|Ensembl:ENSG00000104870|HPRD:03257 19 19q13.3 Fc fragment of IgG, receptor, transporter, alpha protein-coding FCGRT Fc fragment of IgG, receptor, transporter, alpha O FcRn alpha chain|IgG Fc fragment receptor transporter alpha chain|IgG receptor FcRn large subunit p51|immunoglobulin receptor, intestinal, heavy chain|major histocompatibility complex class I-like Fc receptor|neonatal Fc receptor|neonatal Fc-receptor for Ig 20121230 -9606 2218 FKTN RP11-235C23.1 CMD1X|FCMD|LGMD2M|MDDGA4|MDDGB4|MDDGC4 HGNC:3622|MIM:607440|Ensembl:ENSG00000106692|HPRD:06308|Vega:OTTHUMG00000020425 9 9q31-q33 fukutin protein-coding FKTN fukutin O Fukuyama type congenital muscular dystrophy protein|patient fukutin 20121230 -9606 2219 FCN1 RP11-447M12.1 FCNM HGNC:3623|MIM:601252|Ensembl:ENSG00000085265|HPRD:03153|Vega:OTTHUMG00000020895 9 9q34 ficolin (collagen/fibrinogen domain containing) 1 protein-coding FCN1 ficolin (collagen/fibrinogen domain containing) 1 O M-ficolin|collagen/fibrinogen domain-containing protein 1|ficolin (collagen/fibrinogen domain-containing) 1|ficolin-1|ficolin-A|ficolin-alpha 20121230 -9606 2220 FCN2 RP11-263F14.2 EBP-37|FCNL|P35|ficolin-2 HGNC:3624|MIM:601624|Ensembl:ENSG00000160339|HPRD:03376|Vega:OTTHUMG00000020892 9 9q34.3 ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin) protein-coding FCN2 ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin) O 37 kDa elastin-binding protein|L-ficolin|collagen/fibrinogen domain-containing protein 2|ficolin B|ficolin-2|ficolin-B|ficolin-beta|serum lectin p35 20121230 -9606 2221 FCP1 - FCP|FCPX HGNC:3627|MIM:305435 X Xp22.3-p22.2 F-cell production 1 unknown FCP1 F-cell production 1 O - 20121209 -9606 2222 FDFT1 - DGPT|ERG9|SQS|SS HGNC:3629|MIM:184420|Ensembl:ENSG00000079459|HPRD:01694|Vega:OTTHUMG00000090801 8 8p23.1-p22 farnesyl-diphosphate farnesyltransferase 1 protein-coding FDFT1 farnesyl-diphosphate farnesyltransferase 1 O FPP:FPP farnesyltransferase|presqualene-di-diphosphate synthase|squalene synthase|squalene synthetase 20121230 -9606 2224 FDPS - FPPS|FPS HGNC:3631|MIM:134629|Ensembl:ENSG00000160752|HPRD:00606|Vega:OTTHUMG00000013909 1 1q22 farnesyl diphosphate synthase protein-coding FDPS farnesyl diphosphate synthase O (2E,6E)-farnesyl diphosphate synthase|FPP synthase|FPP synthetase|dimethylallyltranstransferase|farnesyl pyrophosphate synthase|farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase|geranyltranstransferase 20121230 -9606 2227 FDPSP3 - FDPSL3|FPSL3 HGNC:3634 14 14q22.2 farnesyl diphosphate synthase pseudogene 3 pseudo FDPSP3 farnesyl diphosphate synthase pseudogene 3 O - 20121230 -9606 2228 FDPSP4 - CHR39B|FDPSL4|FPSL4 HGNC:3635 15 15q15.2 farnesyl diphosphate synthase pseudogene 4 pseudo FDPSP4 farnesyl diphosphate synthase pseudogene 4 O - 20121230 -9606 2229 FDPSP5 - CHR39C|FDPSL5|FPSL5 HGNC:3636 X Xp11.3 farnesyl diphosphate synthase pseudogene 5 pseudo FDPSP5 farnesyl diphosphate synthase pseudogene 5 O - 20121230 -9606 2230 FDX1 - ADX|FDX|LOH11CR1D HGNC:3638|MIM:103260|Ensembl:ENSG00000137714|HPRD:00059|Vega:OTTHUMG00000166589 11 11q22 ferredoxin 1 protein-coding FDX1 ferredoxin 1 O adrenal ferredoxin|adrenodoxin, mitochondrial|ferredoxin-1|hepatoredoxin|mitochondrial adrenodoxin 20121230 -9606 2231 FDX1P1 - ADXP1|FDXP1 HGNC:3640 20 20q11.22 ferredoxin 1 pseudogene 1 pseudo FDX1P1 ferredoxin 1 pseudogene 1 O - 20121230 -9606 2232 FDXR - ADXR HGNC:3642|MIM:103270|Ensembl:ENSG00000161513|HPRD:00060|Vega:OTTHUMG00000179026 17 17q24-q25 ferredoxin reductase protein-coding FDXR ferredoxin reductase O AR|NADPH:adrenodoxin oxidoreductase, mitochondrial|adrenodoxin reductase|ferredoxin--NADP(+) reductase 20121230 -9606 2233 FEB1 - - HGNC:3643|MIM:121210 8 8q13-q21 febrile convulsions 1 unknown FEB1 febrile convulsions 1 O - 20120622 -9606 2234 FEB2 - - HGNC:3644|MIM:602477 19 19p13.3 febrile convulsions 2 unknown FEB2 febrile convulsions 2 O - 20120622 -9606 2235 FECH - EPP|FCE HGNC:3647|MIM:612386|Ensembl:ENSG00000066926|HPRD:01509|Vega:OTTHUMG00000132740 18 18q21.3 ferrochelatase protein-coding FECH ferrochelatase O ferrochelatase, mitochondrial|heme synthase|heme synthetase|protoheme ferro-lyase|protoporphyria 20121230 -9606 2236 FECHP1 - FECHP HGNC:3648 3 3p22.3 ferrochelatase pseudogene 1 pseudo FECHP1 ferrochelatase pseudogene 1 O - 20121230 -9606 2237 FEN1 - FEN-1|MF1|RAD2 HGNC:3650|MIM:600393|Ensembl:ENSG00000168496|HPRD:02670|Vega:OTTHUMG00000168162 11 11q12 flap structure-specific endonuclease 1 protein-coding FEN1 flap structure-specific endonuclease 1 O DNase IV|flap endonuclease 1|maturation factor 1|maturation factor-1 20121230 -9606 2239 GPC4 RP6-198C21.1 K-glypican HGNC:4452|MIM:300168|Ensembl:ENSG00000076716|HPRD:02160|Vega:OTTHUMG00000022434 X Xq26.1 glypican 4 protein-coding GPC4 glypican 4 O dJ900E8.1 (glypican 4)|glypican proteoglycan 4|glypican-4 20121230 -9606 2241 FER - FerT|PPP1R74|TYK3 HGNC:3655|MIM:176942|Ensembl:ENSG00000151422|HPRD:01491|Vega:OTTHUMG00000128751 5 5q21 fer (fps/fes related) tyrosine kinase protein-coding FER fer (fps/fes related) tyrosine kinase O feline encephalitis virus-related kinase FER|fujinami poultry sarcoma/Feline sarcoma-related protein Fer|p94-Fer|phosphoprotein NCP94|protein phosphatase 1, regulatory subunit 74|proto-oncogene c-Fer|tyrosine kinase 3|tyrosine-protein kinase Fer 20121230 -9606 2242 FES - FPS HGNC:3657|MIM:190030|Ensembl:ENSG00000182511|HPRD:01814|Vega:OTTHUMG00000044456 15 15q26.1 feline sarcoma oncogene protein-coding FES feline sarcoma oncogene O Oncogene FES, feline sarcoma virus|feline sarcoma (Snyder-Theilen) viral (v-fes)/Fujinami avian sarcoma (PRCII) viral (v-fps) oncogene homolog|feline sarcoma/Fujinami avian sarcoma oncogene homolog|p93c-fes|proto-oncogene c-Fes|proto-oncogene c-Fps|proto-oncogene tyrosine-protein kinase Fes/Fps|tyrosine-protein kinase Fes/Fps 20121230 -9606 2243 FGA - Fib2 HGNC:3661|MIM:134820|Ensembl:ENSG00000171560|HPRD:00619|Vega:OTTHUMG00000150330 4 4q28 fibrinogen alpha chain protein-coding FGA fibrinogen alpha chain O fibrinogen, A alpha polypeptide 20121230 -9606 2244 FGB - - HGNC:3662|MIM:134830|Ensembl:ENSG00000171564|HPRD:00620|Vega:OTTHUMG00000150331 4 4q28 fibrinogen beta chain protein-coding FGB fibrinogen beta chain O fibrinogen, B beta polypeptide 20121230 -9606 2245 FGD1 RP1-112K5.1 AAS|FGDY|MRXS16|ZFYVE3 HGNC:3663|MIM:300546|Ensembl:ENSG00000102302|HPRD:02373|Vega:OTTHUMG00000021627 X Xp11.21 FYVE, RhoGEF and PH domain containing 1 protein-coding FGD1 FYVE, RhoGEF and PH domain containing 1 O FYVE, RhoGEF and PH domain-containing protein 1|faciogenital dysplasia 1 protein|rho/Rac GEF|rho/Rac guanine nucleotide exchange factor FGD1|zinc finger FYVE domain-containing protein 3 20121230 -9606 2246 FGF1 - AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 HGNC:3665|MIM:131220|Ensembl:ENSG00000113578|HPRD:00567|Vega:OTTHUMG00000059703 5 5q31 fibroblast growth factor 1 (acidic) protein-coding FGF1 fibroblast growth factor 1 (acidic) O beta-endothelial cell growth factor|endothelial cell growth factor, alpha|endothelial cell growth factor, beta|fibroblast growth factor 1|heparin-binding growth factor 1 20121230 -9606 2247 FGF2 - BFGF|FGF-2|FGFB|HBGF-2 HGNC:3676|MIM:134920|Ensembl:ENSG00000138685|HPRD:00622|Vega:OTTHUMG00000039506 4 4q26 fibroblast growth factor 2 (basic) protein-coding FGF2 fibroblast growth factor 2 (basic) O basic fibroblast growth factor bFGF|fibroblast growth factor 2|heparin-binding growth factor 2|prostatropin 20121230 -9606 2248 FGF3 - HBGF-3|INT2 HGNC:3681|MIM:164950|Ensembl:ENSG00000186895|HPRD:01289|Vega:OTTHUMG00000167888 11 11q13 fibroblast growth factor 3 protein-coding FGF3 fibroblast growth factor 3 O FGF-3|INT-2 proto-oncogene protein|V-INT2 murine mammary tumor virus integration site oncogene homolog|fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog)|heparin-binding growth factor 3|murine mammary tumor virus integration site 2, mouse|oncogene INT2|proto-oncogene Int-2 20121230 -9606 2249 FGF4 - HBGF-4|HST|HST-1|HSTF1|K-FGF|KFGF HGNC:3682|MIM:164980|Ensembl:ENSG00000075388|HPRD:01294|Vega:OTTHUMG00000167887 11 11q13.3 fibroblast growth factor 4 protein-coding FGF4 fibroblast growth factor 4 O FGF-4|HSTF-1|fibroblast growth factor 4 splice isoform|heparin secretory transforming protein 1|heparin secretory-transforming protein 1|heparin-binding growth factor 4|human stomach cancer, transforming factor from FGF-related oncogene|kaposi sarcoma oncogene|oncogene HST|transforming protein KS3 20121230 -9606 2250 FGF5 - HBGF-5|Smag-82 HGNC:3683|MIM:165190|Ensembl:ENSG00000138675|HPRD:01307|Vega:OTTHUMG00000130288 4 4q21 fibroblast growth factor 5 protein-coding FGF5 fibroblast growth factor 5 O heparin-binding growth factor 5 20121230 -9606 2251 FGF6 - HBGF-6|HST2 HGNC:3684|MIM:134921|Ensembl:ENSG00000111241|HPRD:00623|Vega:OTTHUMG00000168242 12 12p13 fibroblast growth factor 6 protein-coding FGF6 fibroblast growth factor 6 O FGF-6|HST-2|HSTF-2|heparin secretory-transforming protein 2|heparin-binding growth factor 6 20121230 -9606 2252 FGF7 - HBGF-7|KGF HGNC:3685|MIM:148180|Ensembl:ENSG00000140285|HPRD:01022|Vega:OTTHUMG00000131517 15 15q21.2 fibroblast growth factor 7 protein-coding FGF7 fibroblast growth factor 7 O FGF-7|heparin-binding growth factor 7|keratinocyte growth factor 20121230 -9606 2253 FGF8 - AIGF|FGF-8|HBGF-8|HH6|KAL6 HGNC:3686|MIM:600483|Ensembl:ENSG00000107831|HPRD:02727|Vega:OTTHUMG00000018940 10 10q24 fibroblast growth factor 8 (androgen-induced) protein-coding FGF8 fibroblast growth factor 8 (androgen-induced) O androgen-induced growth factor|fibroblast growth factor 8|heparin-binding growth factor 8 20121230 -9606 2254 FGF9 - GAF|HBFG-9|SYNS3 HGNC:3687|MIM:600921|Ensembl:ENSG00000102678|HPRD:02951|Vega:OTTHUMG00000017412 13 13q11-q12 fibroblast growth factor 9 (glia-activating factor) protein-coding FGF9 fibroblast growth factor 9 (glia-activating factor) O FGF-9|HBGF-9|fibroblast growth factor 9|heparin-binding growth factor 9 20121230 -9606 2255 FGF10 - - HGNC:3666|MIM:602115|Ensembl:ENSG00000070193|HPRD:03665|Vega:OTTHUMG00000131153 5 5p13-p12 fibroblast growth factor 10 protein-coding FGF10 fibroblast growth factor 10 O FGF-10|keratinocyte growth factor 2|produced by fibroblasts of urinary bladder lamina propria 20121230 -9606 2256 FGF11 - FHF3 HGNC:3667|MIM:601514|Ensembl:ENSG00000161958|HPRD:03304|Vega:OTTHUMG00000108136 17 17p13.1 fibroblast growth factor 11 protein-coding FGF11 fibroblast growth factor 11 O FGF-11|FHF-3|fibroblast growth factor homologous factor 3 20121230 -9606 2257 FGF12 - FGF12B|FHF1 HGNC:3668|MIM:601513|Ensembl:ENSG00000114279|HPRD:03303|Vega:OTTHUMG00000156132 3 3q28 fibroblast growth factor 12 protein-coding FGF12 fibroblast growth factor 12 O FGF-12|FHF-1|fibroblast growth factor 12B|fibroblast growth factor FGF-12b|fibroblast growth factor homologous factor 1|myocyte-activating factor 20121230 -9606 2258 FGF13 RP6-27P15.3 FGF-13|FGF2|FHF-2|FHF2 HGNC:3670|MIM:300070|Ensembl:ENSG00000129682|HPRD:02090|Vega:OTTHUMG00000022532 X Xq26.3 fibroblast growth factor 13 protein-coding FGF13 fibroblast growth factor 13 O fibroblast growth factor homologous factor 2 20121230 -9606 2259 FGF14 RP11-397O8.6 FGF-14|FHF-4|FHF4|SCA27 HGNC:3671|MIM:601515|Ensembl:ENSG00000102466|HPRD:03305|Vega:OTTHUMG00000017303 13 13q34 fibroblast growth factor 14 protein-coding FGF14 fibroblast growth factor 14 O bA397O8.2|fibroblast growth factor homologous factor 4 20121230 -9606 2260 FGFR1 - BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|KAL2|N-SAM|OGD|bFGF-R-1 HGNC:3688|MIM:136350|Ensembl:ENSG00000077782|HPRD:00634|Vega:OTTHUMG00000147366 8 8p12 fibroblast growth factor receptor 1 protein-coding FGFR1 fibroblast growth factor receptor 1 O FGFR1/PLAG1 fusion|FMS-like tyrosine kinase 2|basic fibroblast growth factor receptor 1|fms-related tyrosine kinase 2|heparin-binding growth factor receptor|hydroxyaryl-protein kinase|proto-oncogene c-Fgr 20121230 -9606 2261 FGFR3 - ACH|CD333|CEK2|HSFGFR3EX|JTK4 HGNC:3690|MIM:134934|Ensembl:ENSG00000068078|HPRD:00624|Vega:OTTHUMG00000121148 4 4p16.3 fibroblast growth factor receptor 3 protein-coding FGFR3 fibroblast growth factor receptor 3 O FGFR-3|fibroblast growth factor receptor 3 variant 4|hydroxyaryl-protein kinase|tyrosine kinase JTK4 20121230 -9606 2262 GPC5 - - HGNC:4453|MIM:602446|Ensembl:ENSG00000179399|HPRD:03902|Vega:OTTHUMG00000017200 13 13q32 glypican 5 protein-coding GPC5 glypican 5 O bA93M14.1|glypican proteoglycan 5|glypican-5 20121230 -9606 2263 FGFR2 - BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 HGNC:3689|MIM:176943|Ensembl:ENSG00000066468|HPRD:01492|Vega:OTTHUMG00000019175 10 10q26 fibroblast growth factor receptor 2 protein-coding FGFR2 fibroblast growth factor receptor 2 O BEK fibroblast growth factor receptor|FGF receptor|FGFR-2|bacteria-expressed kinase|hydroxyaryl-protein kinase|keratinocyte growth factor receptor|protein tyrosine kinase, receptor like 14|soluble FGFR4 variant 4 20121230 -9606 2264 FGFR4 - CD334|JTK2|TKF HGNC:3691|MIM:134935|Ensembl:ENSG00000160867|HPRD:00625|Vega:OTTHUMG00000151523 5 5q35.1-qter fibroblast growth factor receptor 4 protein-coding FGFR4 fibroblast growth factor receptor 4 O FGFR-4|hydroxyaryl-protein kinase|protein-tyrosine kinase|tyrosine kinase related to fibroblast growth factor receptor|tyrosylprotein kinase 20121230 -9606 2266 FGG PRO2061 - HGNC:3694|MIM:134850|Ensembl:ENSG00000171557|HPRD:00621|Vega:OTTHUMG00000150329 4 4q28 fibrinogen gamma chain protein-coding FGG fibrinogen gamma chain O fibrinogen, gamma polypeptide 20121230 -9606 2267 FGL1 - HFREP1|HP-041|LFIRE-1|LFIRE1 HGNC:3695|MIM:605776|Ensembl:ENSG00000104760|HPRD:09312|Vega:OTTHUMG00000096989 8 8p22 fibrinogen-like 1 protein-coding FGL1 fibrinogen-like 1 O fibrinogen-like protein 1|hepassocin|hepatocellular carcinoma-related sequence|hepatocyte-derived fibrinogen-related protein 1|liver fibrinogen-related protein 1 20121230 -9606 2268 FGR RP1-159A19.2 SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr HGNC:3697|MIM:164940|Ensembl:ENSG00000000938|HPRD:01288|Vega:OTTHUMG00000003516 1 1p36.2-p36.1 Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog protein-coding FGR Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog O c-fgr protooncogene|c-src-2 proto-oncogene|p55-c-fgr protein|proto-oncogene c-Fgr|proto-oncogene tyrosine-protein kinase FGR|tyrosine-protein kinase Fgr 20121230 -9606 2270 FGS2 - - HGNC:3699|MIM:300321 X Xq11-q28 FG syndrome 2 unknown FGS2 FG syndrome 2 O - 20120622 -9606 2271 FH - HLRCC|LRCC|MCL|MCUL1 HGNC:3700|MIM:136850|Ensembl:ENSG00000091483|HPRD:00652|Vega:OTTHUMG00000039597 1 1q42.1 fumarate hydratase protein-coding FH fumarate hydratase O fumarase|fumarate hydratase, mitochondrial 20121230 -9606 2272 FHIT - AP3Aase|FRA3B HGNC:3701|MIM:601153|Ensembl:ENSG00000189283|HPRD:03096|Vega:OTTHUMG00000158591 3 3p14.2 fragile histidine triad protein-coding FHIT fragile histidine triad O AP3A hydrolase|bis(5'-adenosyl)-triphosphatase|diadenosine 5',5'''-P1,P3-triphosphate hydrolase|dinucleosidetriphosphatase|tumor suppressor protein 20121230 -9606 2273 FHL1 RP11-535K18.1 FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA HGNC:3702|MIM:300163|Ensembl:ENSG00000022267|HPRD:02157|Vega:OTTHUMG00000022504 X Xq26 four and a half LIM domains 1 protein-coding FHL1 four and a half LIM domains 1 O LIM protein SLIMMER|four and a half LIM domains protein 1|four-and-a-half Lin11, Isl-1 and Mec-3 domains 1|skeletal muscle LIM-protein 1|skeletal muscle LIM-protein1 20121230 -9606 2274 FHL2 - AAG11|DRAL|FHL-2|SLIM-3|SLIM3 HGNC:3703|MIM:602633|Ensembl:ENSG00000115641|HPRD:04026|Vega:OTTHUMG00000153120 2 2q12.2 four and a half LIM domains 2 protein-coding FHL2 four and a half LIM domains 2 O LIM domain protein DRAL|aging-associated gene 11|down-regulated in rhabdomyosarcoma LIM protein|four and a half LIM domains protein 2|four and a half LIM-domain protein 2|four-and-a-half LIM domains 2|skeletal muscle LIM-protein 3 20121230 -9606 2275 FHL3 - SLIM2 HGNC:3704|MIM:602790|Ensembl:ENSG00000183386|HPRD:09101|Vega:OTTHUMG00000004434 1 1p34 four and a half LIM domains 3 protein-coding FHL3 four and a half LIM domains 3 O FHL-3|LIM-only protein FHL3|SLIM-2|four and a half LIM domains protein 3|skeletal muscle LIM-protein 2 20121230 -9606 2277 FIGF - VEGF-D|VEGFD HGNC:3708|MIM:300091|Ensembl:ENSG00000165197|HPRD:02102|Vega:OTTHUMG00000021175 X Xp22.31 c-fos induced growth factor (vascular endothelial growth factor D) protein-coding FIGF c-fos induced growth factor (vascular endothelial growth factor D) O vascular endothelial growth factor D 20121230 -9606 2278 FIM1 - - - 6 6p23-p22.3 Friend-murine leukemia virus integration site 1 homolog other - - - - 20120315 -9606 2279 FIM3 - - - 3 3q27 Friend-murine leukemia virus integration site 3 homolog other - - - - 20120315 -9606 2280 FKBP1A RP11-314N13.2 FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE HGNC:3711|MIM:186945|Ensembl:ENSG00000088832|HPRD:01741|Vega:OTTHUMG00000031666 20 20p13 FK506 binding protein 1A, 12kDa protein-coding FKBP1A FK506 binding protein 1A, 12kDa O 12 kDa FK506-binding protein|12 kDa FKBP|FK506 binding protein12|FK506-binding protein 1|FK506-binding protein 12|FK506-binding protein 1A (12kD)|FK506-binding protein, T-cell, 12-kD|FKBP12-Exip3|PPIase FKBP1A|calstabin-1|immunophilin FKBP12|peptidyl-prolyl cis-trans isomerase FKBP1A|protein kinase C inhibitor 2|rotamase 20121230 -9606 2281 FKBP1B - FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase HGNC:3712|MIM:600620|Ensembl:ENSG00000119782|HPRD:02795|Vega:OTTHUMG00000151889 2 2p23.3 FK506 binding protein 1B, 12.6 kDa protein-coding FKBP1B FK506 binding protein 1B, 12.6 kDa O 12.6 kDa FK506-binding protein|12.6 kDa FKBP|FK506-binding protein 12.6|FK506-binding protein 1B|FKBP-12.6|FKBP-1B|PPIase FKBP1B|calstabin 2|h-FKBP-12|immunophilin FKBP12.6|peptidyl-prolyl cis-trans isomerase FKBP1B|rotamase 20121230 -9606 2282 FKBP1AP1 - FKBP12|FKBP1P1 HGNC:3714 19 19q13.43 FK506 binding protein 1A, 12kDa pseudogene 1 pseudo FKBP1AP1 FK506 binding protein 1A, 12kDa pseudogene 1 O - 20121230 -9606 2283 FKBP1AP2 - FKBP12|FKBP1P2 HGNC:3715 15 15q24.1 FK506 binding protein 1A, 12kDa pseudogene 2 pseudo FKBP1AP2 FK506 binding protein 1A, 12kDa pseudogene 2 O - 20121230 -9606 2284 FKBP1AP3 - FKBP12|FKBP1P3 HGNC:3716 13 13q14.13 FK506 binding protein 1A, 12kDa pseudogene 3 pseudo FKBP1AP3 FK506 binding protein 1A, 12kDa pseudogene 3 O - 20121230 -9606 2285 FKBP1AP4 - FKBP12|FKBP1P4 HGNC:3717 3 3q25.1 FK506 binding protein 1A, 12kDa pseudogene 4 pseudo FKBP1AP4 FK506 binding protein 1A, 12kDa pseudogene 4 O - 20121230 -9606 2286 FKBP2 - FKBP-13|PPIase HGNC:3718|MIM:186946|Ensembl:ENSG00000173486|HPRD:01742|Vega:OTTHUMG00000167814 11 11q13.1-q13.3 FK506 binding protein 2, 13kDa protein-coding FKBP2 FK506 binding protein 2, 13kDa O 13 kDa FK506-binding protein|13 kDa FKBP|FK506-binding protein 2 (13kD)|FKBP-2|PPIase FKBP2|immunophilin FKBP13|peptidyl-prolyl cis-trans isomerase FKBP2|proline isomerase|rapamycin-binding protein|rotamase 20121230 -9606 2287 FKBP3 - FKBP-25|FKBP-3|FKBP25|PPIase HGNC:3719|MIM:186947|Ensembl:ENSG00000100442|HPRD:01743|Vega:OTTHUMG00000140267 14 14q21.2 FK506 binding protein 3, 25kDa protein-coding FKBP3 FK506 binding protein 3, 25kDa O 25 kDa FK506-binding protein|25 kDa FKBP|FK506-binding protein 25, T-cell|FK506-binding protein 3 (25kD)|PPIase FKBP3|immunophilin FKBP25|peptidyl-prolyl cis-trans isomerase FKBP3|rapamycin binding protein|rapamycin-selective 25 kDa immunophilin|rotamase 20121230 -9606 2288 FKBP4 - FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 HGNC:3720|MIM:600611|Ensembl:ENSG00000004478|HPRD:11794|Vega:OTTHUMG00000090429 12 12p13.33 FK506 binding protein 4, 59kDa protein-coding FKBP4 FK506 binding protein 4, 59kDa O 51 kDa FK506-binding protein|FK506-binding protein 4 (59kD)|HSP binding immunophilin|T-cell FK506-binding protein, 59kD|peptidyl-prolyl cis-trans isomerase FKBP4|peptidylprolyl cis-trans isomerase|rotamase 20121230 -9606 2289 FKBP5 RP3-340B19.6 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 HGNC:3721|MIM:602623|Ensembl:ENSG00000096060|HPRD:04019|Vega:OTTHUMG00000014576 6 6p21.31 FK506 binding protein 5 protein-coding FKBP5 FK506 binding protein 5 O 51 kDa FK506-binding protein 5|51 kDa FKBP|54 kDa progesterone receptor-associated immunophilin|FF1 antigen|FKBP-5|FKBP-51|HSP90-binding immunophilin|PPIase FKBP5|T-cell FK506-binding protein|androgen-regulated protein 6|peptidyl-prolyl cis-trans isomerase FKBP5|peptidylprolyl cis-trans isomerase|rotamase 20121230 -9606 2290 FOXG1 - BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN HGNC:3811|MIM:164874|Ensembl:ENSG00000176165|HPRD:01283|Vega:OTTHUMG00000140187 14 14q13 forkhead box G1 protein-coding FOXG1 forkhead box G1 O brain factor 1|brain factor 2|forkhead box protein G1|forkhead-like 1|forkhead-like 2|forkhead-like 3|forkhead-like 4|oncogene QIN 20121230 -9606 2294 FOXF1 - ACDMPV|FKHL5|FREAC1 HGNC:3809|MIM:601089|Ensembl:ENSG00000103241|HPRD:03053|Vega:OTTHUMG00000137651 16 16q24 forkhead box F1 protein-coding FOXF1 forkhead box F1 O FREAC-1|Forkhead, drosophila, homolog-like 5|forkhead box protein F1|forkhead-related activator 1|forkhead-related protein FKHL5|forkhead-related transcription factor 1 20121230 -9606 2295 FOXF2 - FKHL6|FREAC-2|FREAC2 HGNC:3810|MIM:603250|HPRD:09131 6 6p25.3 forkhead box F2 protein-coding FOXF2 forkhead box F2 O forkhead box protein F2|forkhead-like 6|forkhead-related activator 2|forkhead-related protein FKHL6|forkhead-related transcription factor 2 20121230 -9606 2296 FOXC1 - ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 HGNC:3800|MIM:601090|Ensembl:ENSG00000054598|HPRD:03054|Vega:OTTHUMG00000016182 6 6p25 forkhead box C1 protein-coding FOXC1 forkhead box C1 O forkhead box protein C1|forkhead, drosophila, homolog-like 7|forkhead-related activator 3|forkhead-related protein FKHL7|forkhead-related transcription factor 3|forkhead/winged helix-like transcription factor 7|myeloid factor-delta 20121230 -9606 2297 FOXD1 - FKHL8|FREAC4 HGNC:3802|MIM:601091|Ensembl:ENSG00000251493|HPRD:03055|Vega:OTTHUMG00000162495 5 5q12-q13 forkhead box D1 protein-coding FOXD1 forkhead box D1 O FREAC-4|Forkhead, drosophila, homolog-like 8|forkhead box protein D1|forkhead-like 8|forkhead-related activator 4|forkhead-related protein FKHL8|forkhead-related transcription factor 4 20121230 -9606 2298 FOXD4 - FKHL9|FOXD4A|FREAC-5|FREAC5 HGNC:3805|MIM:601092|Ensembl:ENSG00000170122|HPRD:03056 9 9p24.3 forkhead box D4 protein-coding FOXD4 forkhead box D4 O forkhead box protein D4|forkhead, Drosophila, homolog-like 9|forkhead-related activator 5|forkhead-related protein FKHL9|forkhead-related transcription factor 5|myeloid factor-alpha 20121230 -9606 2299 FOXI1 - FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 HGNC:3815|MIM:601093|Ensembl:ENSG00000168269|HPRD:03057|Vega:OTTHUMG00000130436 5 5q34 forkhead box I1 protein-coding FOXI1 forkhead box I1 O HNF-3/fork-head homolog 3|HNF-3/fork-head homolog-3|forkhead box protein I1|forkhead-like 10|forkhead-related activator 6|forkhead-related protein FKHL10|forkhead-related transcription factor 6|hepatocyte nuclear factor 3 forkhead homolog 3 20121230 -9606 2300 FOXL1 - FKH6|FKHL11|FREAC7 HGNC:3817|MIM:603252|Ensembl:ENSG00000176678|HPRD:07219|Vega:OTTHUMG00000137653 16 16q24 forkhead box L1 protein-coding FOXL1 forkhead box L1 O forkhead box protein L1|forkhead-like 11|forkhead-related protein FKHL11|forkhead-related transcription factor 7 20121230 -9606 2301 FOXE3 - FKHL12|FREAC8 HGNC:3808|MIM:601094|Ensembl:ENSG00000186790|HPRD:03058|Vega:OTTHUMG00000007954 1 1p32 forkhead box E3 protein-coding FOXE3 forkhead box E3 O FREAC-8|forkhead box protein E3|forkhead, drosophila, homolog-like 12|forkhead-related protein FKHL12|forkhead-related transcription factor 8 20121230 -9606 2302 FOXJ1 - FKHL13|HFH-4|HFH4 HGNC:3816|MIM:602291|Ensembl:ENSG00000129654|HPRD:03798|Vega:OTTHUMG00000180120 17 17q25.1 forkhead box J1 protein-coding FOXJ1 forkhead box J1 O fork head homologue 4|forkhead box protein J1|forkhead transcription factor HFH-4|forkhead-like 13|forkhead-related protein FKHL13|hepatocyte nuclear factor 3 forkhead homolog 4 20121230 -9606 2303 FOXC2 - FKHL14|LD|MFH-1|MFH1 HGNC:3801|MIM:602402|Ensembl:ENSG00000176692|HPRD:03869|Vega:OTTHUMG00000137652 16 16q24.1 forkhead box C2 (MFH-1, mesenchyme forkhead 1) protein-coding FOXC2 forkhead box C2 (MFH-1, mesenchyme forkhead 1) O MFH-1,mesenchyme forkhead 1|forkhead box protein C2|forkhead, Drosophila, homolog-like 14|forkhead-related protein FKHL14|mesenchyme fork head protein 1|transcription factor FKH-14 20121230 -9606 2304 FOXE1 - FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2 HGNC:3806|MIM:602617|Ensembl:ENSG00000178919|HPRD:04014|HPRD:06188|Vega:OTTHUMG00000020333 9 9q22 forkhead box E1 (thyroid transcription factor 2) protein-coding FOXE1 forkhead box E1 (thyroid transcription factor 2) O HNF-3/fork head-like protein 5|forkhead box E2|forkhead box protein E1|forkhead box protein E2|forkhead, drosophila, homolog-like 15|forkhead-related protein FKHL15|thyroid transcription factor 2 20121230 -9606 2305 FOXM1 - FKHL16|FOXM1B|HFH-11|HFH11|HNF-3|INS-1|MPHOSPH2|MPP-2|MPP2|PIG29|TGT3|TRIDENT HGNC:3818|MIM:602341|Ensembl:ENSG00000111206|HPRD:03823|Vega:OTTHUMG00000168118 12 12p13 forkhead box M1 protein-coding FOXM1 forkhead box M1 O Forkhead, drosophila, homolog-like 16|HNF-3/fork-head homolog 11|M-phase phosphoprotein 2|MPM-2 reactive phosphoprotein 2|forkhead box protein M1|forkhead-related protein FKHL16|hepatocyte nuclear factor 3 forkhead homolog 11|transcription factor Trident|winged-helix factor from INS-1 cells 20121230 -9606 2306 FOXD2 - FKHL17|FREAC-9|FREAC9 HGNC:3803|MIM:602211|Ensembl:ENSG00000186564|HPRD:03735|Vega:OTTHUMG00000007950 1 1p34-p32 forkhead box D2 protein-coding FOXD2 forkhead box D2 O forkhead box protein D2|forkhead, drosophila, homolog-like 17|forkhead-like 17|forkhead-related activator 9|forkhead-related protein FKHL17|forkhead-related transcription factor 9 20121230 -9606 2307 FOXS1 - FKHL18|FREAC10 HGNC:3735|MIM:602939|Ensembl:ENSG00000179772|HPRD:04246|Vega:OTTHUMG00000032183 20 20q11.21 forkhead box S1 protein-coding FOXS1 forkhead box S1 O FREAC-10|forkhead box protein S1|forkhead-like 18 protein|forkhead-related activator 10|forkhead-related transcription factor 10|forkhead-related transcription factor FREAC-10 20121230 -9606 2308 FOXO1 - FKH1|FKHR|FOXO1A HGNC:3819|MIM:136533|Ensembl:ENSG00000150907|HPRD:00645|Vega:OTTHUMG00000016775 13 13q14.1 forkhead box O1 protein-coding FOXO1 forkhead box O1 O forkhead box protein O1|forkhead box protein O1A|forkhead, Drosophila, homolog of, in rhabdomyosarcoma 20121230 -9606 2309 FOXO3 - AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A HGNC:3821|MIM:602681|Ensembl:ENSG00000118689|HPRD:04061|Vega:OTTHUMG00000015327 6 6q21 forkhead box O3 protein-coding FOXO3 forkhead box O3 O forkhead box O3A|forkhead box protein O3|forkhead homolog (rhabdomyosarcoma) like 1|forkhead in rhabdomyosarcoma-like 1|forkhead, Drosophila, homolog of, in rhabdomyosarcoma-like 1 20121230 -9606 2310 FOXO3B - FKHRL1P1|ZNF286C HGNC:3822 17 17p11.2 forkhead box O3B pseudogene pseudo FOXO3B forkhead box O3B pseudogene O - 20121230 -9606 2311 FOXO1B - FKHRP1 HGNC:3820 5 5q35.3 forkhead box O1B pseudogene pseudo FOXO1B forkhead box O1B pseudogene O - 20121230 -9606 2312 FLG - ATOD2 HGNC:3748|MIM:135940|Ensembl:ENSG00000143631|HPRD:15920|Vega:OTTHUMG00000012202 1 1q21.3 filaggrin protein-coding FLG filaggrin O epidermal filaggrin 20121230 -9606 2313 FLI1 - EWSR2|SIC-1 HGNC:3749|MIM:193067|Ensembl:ENSG00000151702|HPRD:01901|Vega:OTTHUMG00000165792 11 11q24.1-q24.3 Friend leukemia virus integration 1 protein-coding FLI1 Friend leukemia virus integration 1 O Ewing sarcoma breakpoint region 2|Friend leukemia integration 1 transcription factor|proto-oncogene Fli-1|transcription factor ERGB 20121230 -9606 2314 FLII - FLI|FLIL|Fli1 HGNC:3750|MIM:600362|Ensembl:ENSG00000177731|HPRD:02647|Vega:OTTHUMG00000059389 17 17p11.2 flightless I homolog (Drosophila) protein-coding FLII flightless I homolog (Drosophila) O protein flightless-1 homolog 20121230 -9606 2315 MLANA RP11-546N22.1 MART-1|MART1 HGNC:7124|MIM:605513|Ensembl:ENSG00000120215|HPRD:09269|Vega:OTTHUMG00000019510 9 9p24.1 melan-A protein-coding MLANA melan-A O antigen LB39-AA|antigen SK29-AA|melanoma antigen recognized by T-cells 1|protein Melan-A 20121230 -9606 2316 FLNA XX-FW83128A1.1 ABP-280|ABPX|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD HGNC:3754|MIM:300017|Ensembl:ENSG00000196924|HPRD:02060|Vega:OTTHUMG00000022712 X Xq28 filamin A, alpha protein-coding FLNA filamin A, alpha O actin binding protein 280|alpha-filamin|endothelial actin-binding protein|filamin-1|filamin-A|non-muscle filamin 20121230 -9606 2317 FLNB - ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP HGNC:3755|MIM:603381|Ensembl:ENSG00000136068|HPRD:04543|Vega:OTTHUMG00000159158 3 3p14.3 filamin B, beta protein-coding FLNB filamin B, beta O ABP-280 homolog|Larsen syndrome 1 (autosomal dominant)|actin binding protein 278|actin-binding-like protein|beta-filamin|filamin homolog 1|filamin-3|filamin-B|thyroid autoantigen 20121230 -9606 2318 FLNC - ABP-280|ABP280A|ABPA|ABPL|FLN2|MFM5|MPD4 HGNC:3756|MIM:102565|Ensembl:ENSG00000128591|HPRD:00018|Vega:OTTHUMG00000023627 7 7q32-q35 filamin C, gamma protein-coding FLNC filamin C, gamma O ABP-280-like protein|ABP-L, gamma filamin|FLN-C|actin binding protein 280|actin-binding-like protein|filamin 2|filamin-2|filamin-C 20121230 -9606 2319 FLOT2 - ECS-1|ECS1|ESA|ESA1|M17S1 HGNC:3758|MIM:131560|Ensembl:ENSG00000132589|HPRD:00580|Vega:OTTHUMG00000132674 17 17q11-q12 flotillin 2 protein-coding FLOT2 flotillin 2 O Flotillin 2 (epidermal surface antigen 1)|epidermal surface antigen|flotillin-2|membrane component chromosome 17 surface marker 1|membrane component, chromosome 17, surface marker 1 (35kD protein identified by monoclonal antibody ECS-1) 20121230 -9606 2321 FLT1 - FLT|FLT-1|VEGFR-1|VEGFR1 HGNC:3763|MIM:165070|Ensembl:ENSG00000102755|HPRD:01297|Vega:OTTHUMG00000016648 13 13q12 fms-related tyrosine kinase 1 protein-coding FLT1 fms-related tyrosine kinase 1 O fms-like tyrosine kinase 1|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)|tyrosine-protein kinase FRT|tyrosine-protein kinase receptor FLT|vascular endothelial growth factor receptor 1|vascular permeability factor receptor 20121230 -9606 2322 FLT3 RP11-153M24.3 CD135|FLK-2|FLK2|STK1 HGNC:3765|MIM:136351|Ensembl:ENSG00000122025|HPRD:00635|Vega:OTTHUMG00000016646 13 13q12 fms-related tyrosine kinase 3 protein-coding FLT3 fms-related tyrosine kinase 3 O CD135 antigen|FL cytokine receptor|STK-1|fetal liver kinase 2|fms-like tyrosine kinase 3|growth factor receptor tyrosine kinase type III|receptor-type tyrosine-protein kinase FLT3|stem cell tyrosine kinase 1 20121230 -9606 2323 FLT3LG - FL|FLT3L HGNC:3766|MIM:600007|Ensembl:ENSG00000090554|HPRD:02477 19 19q13.3 fms-related tyrosine kinase 3 ligand protein-coding FLT3LG fms-related tyrosine kinase 3 ligand O flt3 ligand 20121230 -9606 2324 FLT4 - FLT41|LMPH1A|PCL|VEGFR3 HGNC:3767|MIM:136352|Ensembl:ENSG00000037280|HPRD:00636|Vega:OTTHUMG00000130931 5 5q35.3 fms-related tyrosine kinase 4 protein-coding FLT4 fms-related tyrosine kinase 4 O FLT-4|VEGFR-3|fms-like tyrosine kinase 4|soluble VEGFR3 variant 1|soluble VEGFR3 variant 2|soluble VEGFR3 variant 3|tyrosine-protein kinase receptor FLT4|vascular endothelial growth factor receptor 3 20121230 -9606 2326 FMO1 - - HGNC:3769|MIM:136130|Ensembl:ENSG00000010932|HPRD:00631|Vega:OTTHUMG00000035502 1 1q24.3 flavin containing monooxygenase 1 protein-coding FMO1 flavin containing monooxygenase 1 O FMO 1|Flavin-containing monooxygenase 1 (fetal liver)|dimethylaniline monooxygenase [N-oxide-forming] 1|dimethylaniline oxidase 1|fetal hepatic flavin-containing monooxygenase 1 20121230 -9606 2327 FMO2 - FMO1B1 HGNC:3770|MIM:603955|Ensembl:ENSG00000094963|HPRD:04903|Vega:OTTHUMG00000035504 1 1q24.3 flavin containing monooxygenase 2 (non-functional) protein-coding FMO2 flavin containing monooxygenase 2 (non-functional) O FMO 1B1|FMO 2|FMO, pulmonary|dimethylaniline monooxygenase [N-oxide-forming] 2|dimethylaniline oxidase 2|pulmonary flavin-containing monooxygenase 2 20121230 -9606 2328 FMO3 - FMOII|TMAU|dJ127D3.1 HGNC:3771|MIM:136132|Ensembl:ENSG00000007933|HPRD:00633|Vega:OTTHUMG00000035505 1 1q24.3 flavin containing monooxygenase 3 protein-coding FMO3 flavin containing monooxygenase 3 O FMO 3|FMO II|FMO form 2|dimethylaniline monooxygenase [N-oxide-forming] 3|dimethylaniline oxidase 3|hepatic flavin-containing monooxygenase 3|hepatic flavin-containing monooxygenase-3|trimethylamine monooxygenase 20121230 -9606 2329 FMO4 - FMO2 HGNC:3772|MIM:136131|Ensembl:ENSG00000076258|HPRD:00632|Vega:OTTHUMG00000035506 1 1q24.3 flavin containing monooxygenase 4 protein-coding FMO4 flavin containing monooxygenase 4 O FMO 4|dimethylaniline monooxygenase [N-oxide-forming] 4|dimethylaniline oxidase 4|hepatic flavin-containing monooxygenase 4 20121230 -9606 2330 FMO5 RP11-337C18.2 - HGNC:3773|MIM:603957|Ensembl:ENSG00000131781|HPRD:04904|Vega:OTTHUMG00000014607 1 1q21.1 flavin containing monooxygenase 5 protein-coding FMO5 flavin containing monooxygenase 5 O FMO 5|dimethylaniline monooxygenase [N-oxide-forming] 5|dimethylaniline oxidase 5|hepatic flavin-containing monooxygenase 5 20121230 -9606 2331 FMOD - SLRR2E HGNC:3774|MIM:600245|Ensembl:ENSG00000122176|HPRD:02591|Vega:OTTHUMG00000035910 1 1q32 fibromodulin protein-coding FMOD fibromodulin O FM|KSPG fibromodulin|collagen-binding 59 kDa protein|fibromodulin proteoglycan|keratan sulfate proteoglycan fibromodulin 20121230 -9606 2332 FMR1 - FMRP|FRAXA|POF|POF1 HGNC:3775|MIM:309550|Ensembl:ENSG00000102081|HPRD:02398|Vega:OTTHUMG00000022606 X Xq27.3 fragile X mental retardation 1 protein-coding FMR1 fragile X mental retardation 1 O fragile X mental retardation 1 protein|fragile X mental retardation protein 1|protein FMR-1 20121230 -9606 2334 AFF2 - FMR2|FMR2P|FRAXE|MRX2|OX19 HGNC:3776|MIM:300806|Ensembl:ENSG00000155966|HPRD:02397|Vega:OTTHUMG00000022613 X Xq28 AF4/FMR2 family, member 2 protein-coding AFF2 AF4/FMR2 family, member 2 O AF4/FMR2 family member 2|fragile X E mental retardation syndrome protein|fragile X mental retardation 2 protein|protein FMR-2 20121230 -9606 2335 FN1 - CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF HGNC:3778|MIM:135600|Ensembl:ENSG00000115414|HPRD:00626|Vega:OTTHUMG00000133054 2 2q34 fibronectin 1 protein-coding FN1 fibronectin 1 O cold-insoluble globulin|fibronectin|migration-stimulating factor 20121230 -9606 2336 FND - - HGNC:3779 - - frontonasal dysplasia unknown FND frontonasal dysplasia O - 20110215 -9606 2339 FNTA - FPTA|PGGT1A|PTAR2 HGNC:3782|MIM:134635|Ensembl:ENSG00000168522|HPRD:00607|Vega:OTTHUMG00000165279 8 8p11 farnesyltransferase, CAAX box, alpha protein-coding FNTA farnesyltransferase, CAAX box, alpha O FTase-alpha|GGTase-I-alpha|farnesyl-protein transferase alpha-subunit|protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha|protein prenyltransferase alpha subunit repeat containing 2|ras proteins prenyltransferase subunit alpha|type I protein geranyl-geranyltransferase alpha subunit 20121230 -9606 2341 FNTAP2 - FNTAL2 HGNC:3784 13 13q12.11 farnesyltransferase, CAAX box, alpha pseudogene 2 pseudo FNTAP2 farnesyltransferase, CAAX box, alpha pseudogene 2 O - 20121230 -9606 2342 FNTB - FPTB HGNC:3785|MIM:134636|Ensembl:ENSG00000125954|Ensembl:ENSG00000257365|HPRD:00608|Vega:OTTHUMG00000142811 14 14q23.3 farnesyltransferase, CAAX box, beta protein-coding FNTB farnesyltransferase, CAAX box, beta O CAAX farnesyltransferase subunit beta|FTase-beta|protein farnesyltransferase subunit beta|ras proteins prenyltransferase subunit beta 20121230 -9606 2346 FOLH1 GIG27 FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP HGNC:3788|MIM:600934|Ensembl:ENSG00000086205|HPRD:02961|Vega:OTTHUMG00000166625 11 11p11.2 folate hydrolase (prostate-specific membrane antigen) 1 protein-coding FOLH1 folate hydrolase (prostate-specific membrane antigen) 1 O N-acetylated alpha-linked acidic dipeptidase 1|N-acetylated-alpha-linked acidic dipeptidase I|NAALADase I|cell growth-inhibiting gene 27 protein|folylpoly-gamma-glutamate carboxypeptidase|glutamate carboxylase II|glutamate carboxypeptidase 2|glutamate carboxypeptidase II|membrane glutamate carboxypeptidase|prostate specific membrane antigen variant F|pteroylpoly-gamma-glutamate carboxypeptidase 20121230 -9606 2348 FOLR1 - FBP|FOLR HGNC:3791|MIM:136430|Ensembl:ENSG00000110195|HPRD:00638|Vega:OTTHUMG00000167876 11 11q13.3-q14.1 folate receptor 1 (adult) protein-coding FOLR1 folate receptor 1 (adult) O FR-alpha|KB cells FBP|adult folate-binding protein|folate binding protein|folate receptor alpha|folate receptor, adult|ovarian tumor-associated antigen MOv18 20121230 -9606 2350 FOLR2 - BETA-HFR|FBP|FBP/PL-1|FR-BETA|FR-P3 HGNC:3793|MIM:136425|Ensembl:ENSG00000165457|HPRD:00637|Vega:OTTHUMG00000150394 11 11q13.3-q13.5 folate receptor 2 (fetal) protein-coding FOLR2 folate receptor 2 (fetal) O folate receptor beta|folate receptor, beta|folate receptor, fetal/placental|folate-binding protein, fetal/placental|placental folate-binding protein 20121230 -9606 2352 FOLR3 - FR-G|FR-gamma|gamma-hFR HGNC:3795|MIM:602469|Ensembl:ENSG00000110203|HPRD:03918|Vega:OTTHUMG00000167870 11 11q13 folate receptor 3 (gamma) protein-coding FOLR3 folate receptor 3 (gamma) O folate receptor gamma 20121230 -9606 2353 FOS - AP-1|C-FOS|p55 HGNC:3796|MIM:164810|Ensembl:ENSG00000170345|HPRD:01275|Vega:OTTHUMG00000171774 14 14q24.3 FBJ murine osteosarcoma viral oncogene homolog protein-coding FOS FBJ murine osteosarcoma viral oncogene homolog O FBJ murine osteosarcoma viral (v-fos) oncogene homolog (oncogene FOS)|G0/G1 switch regulatory protein 7|activator protein 1|cellular oncogene c-fos|proto-oncogene c-Fos 20121230 -9606 2354 FOSB - AP-1|G0S3|GOS3|GOSB HGNC:3797|MIM:164772|Ensembl:ENSG00000125740|HPRD:01270|Vega:OTTHUMG00000182122 19 19q13.32 FBJ murine osteosarcoma viral oncogene homolog B protein-coding FOSB FBJ murine osteosarcoma viral oncogene homolog B O G0/G1 switch regulatory protein 3|activator protein 1|protein fosB 20121230 -9606 2355 FOSL2 - FRA2 HGNC:3798|MIM:601575|Ensembl:ENSG00000075426|HPRD:03343|Vega:OTTHUMG00000097832 2 2p23.3 FOS-like antigen 2 protein-coding FOSL2 FOS-like antigen 2 O FRA-2|fos-related antigen 2 20121230 -9606 2356 FPGS RP11-228B15.1 - HGNC:3824|MIM:136510|Ensembl:ENSG00000136877|HPRD:00642|Vega:OTTHUMG00000020716 9 9q34.1 folylpolyglutamate synthase protein-coding FPGS folylpolyglutamate synthase O folylpoly-gamma-glutamate synthetase|folylpolyglutamate synthase, mitochondrial|tetrahydrofolate synthase|tetrahydrofolylpolyglutamate synthase 20121230 -9606 2357 FPR1 - FMLP|FPR HGNC:3826|MIM:136537|Ensembl:ENSG00000171051|HPRD:00646 19 19q13.4 formyl peptide receptor 1 protein-coding FPR1 formyl peptide receptor 1 O N-formylpeptide chemoattractant receptor|fMLP receptor|fMet-Leu-Phe receptor 20121230 -9606 2358 FPR2 - ALXR|FMLP-R-II|FMLPX|FPR2A|FPRH1|FPRH2|FPRL1|HM63|LXA4R HGNC:3827|MIM:136538|Ensembl:ENSG00000171049|HPRD:00647 19 19q13.3-q13.4 formyl peptide receptor 2 protein-coding FPR2 formyl peptide receptor 2 O FMLP-R-I|FMLP-related receptor I|LXA4 receptor|N-formyl peptide receptor 2|RFP|formyl peptide receptor-like 1|lipoxin A4 receptor (formyl peptide receptor related) 20121230 -9606 2359 FPR3 - FML2_HUMAN|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I HGNC:3828|MIM:136539|Ensembl:ENSG00000187474|HPRD:00648 19 19q13.3-q13.4 formyl peptide receptor 3 protein-coding FPR3 formyl peptide receptor 3 O FMLP-R-II|FMLP-related receptor II|N-formyl peptide receptor 3|formyl peptide receptor-like 2 20121230 -9606 2360 FRA1A - - HGNC:3868 1 1p36 fragile site, aphidicolin type, common, fra(1)(p36) other FRA1A fragile site, aphidicolin type, common, fra(1)(p36) O - 20070912 -9606 2361 FRA1B - - HGNC:3869 1 1p32 fragile site, aphidicolin type, common, fra(1)(p32) other FRA1B fragile site, aphidicolin type, common, fra(1)(p32) O - 20100121 -9606 2362 FRA1C - - HGNC:3870 1 1p31.2 fragile site, aphidicolin type, common, fra(1)(p31.2) other FRA1C fragile site, aphidicolin type, common, fra(1)(p31.2) O - 20070912 -9606 2363 FRA1D - - HGNC:3871 1 1p22 fragile site, aphidicolin type, common, fra(1)(p22) other FRA1D fragile site, aphidicolin type, common, fra(1)(p22) O - 20070912 -9606 2364 FRA1E - - HGNC:3872 1 1p21.2 fragile site, aphidicolin type, common, fra(1)(p21.2) other FRA1E fragile site, aphidicolin type, common, fra(1)(p21.2) O - 20070912 -9606 2365 FRA1F - - HGNC:3873 1 1q21 fragile site, aphidicolin type, common, fra(1)(q21) other FRA1F fragile site, aphidicolin type, common, fra(1)(q21) O - 20070912 -9606 2366 FRA1G - - HGNC:3874 1 1q25.1 fragile site, aphidicolin type, common, fra(1)(q25.1) other FRA1G fragile site, aphidicolin type, common, fra(1)(q25.1) O - 20070912 -9606 2367 FRA1H - - HGNC:3875 1 1q42.1 fragile site, 5-azacytidine type, common, fra(1)(q42) other FRA1H fragile site, 5-azacytidine type, common, fra(1)(q42) O - 20100121 -9606 2368 FRA1I - - HGNC:3876 1 1q44 fragile site, aphidicolin type, common, fra(1)(q44) other FRA1I fragile site, aphidicolin type, common, fra(1)(q44) O - 20070912 -9606 2369 FRA1J - - HGNC:3877 1 1q12 fragile site, 5-azacytidine type, common, fra(1)(q12) other FRA1J fragile site, 5-azacytidine type, common, fra(1)(q12) O - 20070912 -9606 2370 FRA1K - - HGNC:3878 1 1q31 fragile site, aphidicolin type, common, fra(1)(q31) other FRA1K fragile site, aphidicolin type, common, fra(1)(q31) O - 20070912 -9606 2371 FRA1L - - HGNC:3879 1 1p31 fragile site, aphidicolin type, common, fra(1)(p31) other FRA1L fragile site, aphidicolin type, common, fra(1)(p31) O - 20070912 -9606 2372 FRA1M - - HGNC:3880 1 1p21.3 fragile site, folic acid type, rare, fra(1)(p21.3) other FRA1M fragile site, folic acid type, rare, fra(1)(p21.3) O - 20070912 -9606 2373 FRA2A - - HGNC:3885|MIM:136610 2 2q11.2 fragile site, folic acid type, rare, fra(2)(q11.2) other FRA2A fragile site, folic acid type, rare, fra(2)(q11.2) O - 20070912 -9606 2374 FRA2B - - HGNC:3886 2 2q13 fragile site, folic acid type, rare, fra(2)(q13) other FRA2B fragile site, folic acid type, rare, fra(2)(q13) O - 20070912 -9606 2375 FRA2C - - HGNC:3887 2 2p24.2 fragile site, aphidicolin type, common, fra(2)(p24.2) other FRA2C fragile site, aphidicolin type, common, fra(2)(p24.2) O - 20070912 -9606 2376 FRA2D - - HGNC:3888 2 2p16.2 fragile site, aphidicolin type, common, fra(2)(p16.2) other FRA2D fragile site, aphidicolin type, common, fra(2)(p16.2) O - 20070912 -9606 2377 FRA2E - - HGNC:3889 2 2p13 fragile site, aphidicolin type, common, fra(2)(p13) other FRA2E fragile site, aphidicolin type, common, fra(2)(p13) O - 20070912 -9606 2378 FRA2F - - HGNC:3890 2 2q21.3 fragile site, aphidicolin type, common, fra(2)(q21.3) other FRA2F fragile site, aphidicolin type, common, fra(2)(q21.3) O - 20070912 -9606 2379 FRA2G - - HGNC:3891 2 2q31 fragile site, aphidicolin type, common, fra(2)(q31) other FRA2G fragile site, aphidicolin type, common, fra(2)(q31) O - 20100121 -9606 2380 FRA2H - - HGNC:3892 2 2q32.1 fragile site, aphidicolin type, common, fra(2)(q32.1) other FRA2H fragile site, aphidicolin type, common, fra(2)(q32.1) O - 20120923 -9606 2381 FRA2I - - HGNC:3893 2 2q33 fragile site, aphidicolin type, common, fra(2)(q33) other FRA2I fragile site, aphidicolin type, common, fra(2)(q33) O - 20070912 -9606 2382 FRA2J - - HGNC:3894 2 2q37.3 fragile site, aphidicolin type, common, fra(2)(q37.3) other FRA2J fragile site, aphidicolin type, common, fra(2)(q37.3) O - 20070912 -9606 2383 FRA2K - - HGNC:3895 2 2q22.3 fragile site, folic acid type, rare, fra(2)(q22.3) other FRA2K fragile site, folic acid type, rare, fra(2)(q22.3) O - 20070912 -9606 2384 FRA3A - - HGNC:3896 3 3p24.2 fragile site, aphidicolin type, common, fra(3)(p24.2) other FRA3A fragile site, aphidicolin type, common, fra(3)(p24.2) O - 20070912 -9606 2386 FRA3C - - HGNC:3898 3 3q27 fragile site, aphidicolin type, common, fra(3)(q27) other FRA3C fragile site, aphidicolin type, common, fra(3)(q27) O - 20070912 -9606 2387 FRA3D - - HGNC:3899 3 3q25 fragile site, aphidicolin type, common, fra(3)(q25) other FRA3D fragile site, aphidicolin type, common, fra(3)(q25) O - 20070912 -9606 2388 FRA4A - - HGNC:3900 4 4p16.1 fragile site, aphidicolin type, common, fra(4)(p16.1) other FRA4A fragile site, aphidicolin type, common, fra(4)(p16.1) O - 20070912 -9606 2389 FRA4B - - HGNC:3901 4 4q12 fragile site, BrdU type, common, fra(4)(q12) other FRA4B fragile site, BrdU type, common, fra(4)(q12) O - 20070912 -9606 2390 FRA4C - - HGNC:3902 4 4q31.1 fragile site, aphidicolin type, common, fra(4)(q31.1) other FRA4C fragile site, aphidicolin type, common, fra(4)(q31.1) O - 20070912 -9606 2391 FRA4D - - HGNC:3903 4 4p15 fragile site, aphidicolin type, common, fra(4)(p15) other FRA4D fragile site, aphidicolin type, common, fra(4)(p15) O - 20070912 -9606 2393 FRA5A - - HGNC:3905 5 5p13 fragile site, BrdU type, common, fra(5)(p13) other FRA5A fragile site, BrdU type, common, fra(5)(p13) O - 20070912 -9606 2394 FRA5B - - HGNC:3906 5 5q15 fragile site, BrdU type, common, fra(5)(q15) other FRA5B fragile site, BrdU type, common, fra(5)(q15) O - 20070912 -9606 2395 FXN - CyaY|FA|FARR|FRDA|X25 HGNC:3951|MIM:606829|Ensembl:ENSG00000165060|HPRD:06013|Vega:OTTHUMG00000019977 9 9q21.11 frataxin protein-coding FXN frataxin O Friedreich ataxia protein|frataxin, mitochondrial 20121230 -9606 2396 FRA5C - - HGNC:3907 5 5q31.1 fragile site, aphidicolin type, common, fra(5)(q31.1) other FRA5C fragile site, aphidicolin type, common, fra(5)(q31.1) O - 20070912 -9606 2397 FRA5D - - HGNC:3908 5 5q15 fragile site, aphidicolin type, common, fra(5)(q15) other FRA5D fragile site, aphidicolin type, common, fra(5)(q15) O - 20070912 -9606 2398 FRA5E - - HGNC:3909 5 5p14 fragile site, aphidicolin type, common, fra(5)(p14) other FRA5E fragile site, aphidicolin type, common, fra(5)(p14) O - 20070912 -9606 2399 FRA5F - - HGNC:3910 5 5q21 fragile site, aphidicolin type, common, fra(5)(q21) other FRA5F fragile site, aphidicolin type, common, fra(5)(q21) O - 20070912 -9606 2400 FRA5G - - HGNC:3911 5 5q35 fragile site, folic acid type, rare, fra(5)(q35) other FRA5G fragile site, folic acid type, rare, fra(5)(q35) O - 20070912 -9606 2401 FRA6A - - HGNC:3912 6 6p23 fragile site, folic acid type, rare, fra(6)(p23) other FRA6A fragile site, folic acid type, rare, fra(6)(p23) O - 20070912 -9606 2402 FRA6B - - HGNC:3913 6 6p25.1 fragile site, aphidicolin type, common, fra(6)(p25.1) other FRA6B fragile site, aphidicolin type, common, fra(6)(p25.1) O - 20070912 -9606 2403 FRA6C - - HGNC:3914 6 6p22.2 fragile site, aphidicolin type, common, fra(6)(p22.2) other FRA6C fragile site, aphidicolin type, common, fra(6)(p22.2) O - 20070912 -9606 2404 FRA6D - - HGNC:3915 6 6q13 fragile site, BrdU type, common, fra(6)(q13) other FRA6D fragile site, BrdU type, common, fra(6)(q13) O - 20070912 -9606 2405 FRA6E - - HGNC:3916 6 6q26 fragile site, aphidicolin type, common, fra(6)(q26) other FRA6E fragile site, aphidicolin type, common, fra(6)(q26) O - 20110227 -9606 2406 FRA6F - - HGNC:3917 6 6q21 fragile site, aphidicolin type, common, fra(6)(q21) other FRA6F fragile site, aphidicolin type, common, fra(6)(q21) O - 20070912 -9606 2407 FRA6G - - HGNC:3918 6 6q15 fragile site, aphidicolin type, common, fra(6)(q15) other FRA6G fragile site, aphidicolin type, common, fra(6)(q15) O - 20070912 -9606 2408 FRA7A - - HGNC:3919 7 7p11.2 fragile site, folic acid type, rare, fra(7)(p11.2) other FRA7A fragile site, folic acid type, rare, fra(7)(p11.2) O - 20070912 -9606 2409 FRA7B - - HGNC:3920 7 7p22 fragile site, aphidicolin type, common, fra(7)(p22) other FRA7B fragile site, aphidicolin type, common, fra(7)(p22) O - 20070912 -9606 2410 FRA7C - - HGNC:3921 7 7p14.2 fragile site, aphidicolin type, common, fra(7)(p14.2) other FRA7C fragile site, aphidicolin type, common, fra(7)(p14.2) O - 20070912 -9606 2411 FRA7D - - HGNC:3922 7 7p13 fragile site, aphidicolin type, common, fra(7)(p13) other FRA7D fragile site, aphidicolin type, common, fra(7)(p13) O - 20070912 -9606 2412 FRA7E - - HGNC:3923 7 7q21.2 fragile site, aphidicolin type, common, fra(7)(q21.2) other FRA7E fragile site, aphidicolin type, common, fra(7)(q21.2) O - 20070912 -9606 2413 FRA7F - - HGNC:3924 7 7q22 fragile site, aphidicolin type, common, fra(7)(q22) other FRA7F fragile site, aphidicolin type, common, fra(7)(q22) O - 20070912 -9606 2414 FRA7G - D7S486 HGNC:3925 7 7q31.2 fragile site, aphidicolin type, common, fra(7)(q31.2) other FRA7G fragile site, aphidicolin type, common, fra(7)(q31.2) O - 20070912 -9606 2415 FRA7H - - HGNC:3926 7 7q32.3 fragile site, aphidicolin type, common, fra(7)(q32.3) other FRA7H fragile site, aphidicolin type, common, fra(7)(q32.3) O - 20070912 -9606 2416 FRA7I - - HGNC:3927 7 7q36 fragile site, aphidicolin type, common, fra(7)(q36) other FRA7I fragile site, aphidicolin type, common, fra(7)(q36) O - 20070912 -9606 2417 FRA7J - - HGNC:3928 7 7q11 fragile site, aphidicolin type, common, fra(7)(q11) other FRA7J fragile site, aphidicolin type, common, fra(7)(q11) O - 20070912 -9606 2418 FRA8A - - HGNC:3929 8 8q22.3 fragile site, folic acid type, rare, fra(8)(q22.3) other FRA8A fragile site, folic acid type, rare, fra(8)(q22.3) O - 20070912 -9606 2419 FRA8B - - HGNC:3930 8 8q22.1 fragile site, aphidicolin type, common, fra(8)(q22.1) other FRA8B fragile site, aphidicolin type, common, fra(8)(q22.1) O - 20070912 -9606 2420 FRDA2 - - HGNC:3952|MIM:601992 9 9p23-p11 Friedreich ataxia 2 unknown FRDA2 Friedreich ataxia 2 O - 20120622 -9606 2421 FRA8C - - HGNC:3931 8 8q24.1 fragile site, aphidicolin type, common, fra(8)(q24.1) other FRA8C fragile site, aphidicolin type, common, fra(8)(q24.1) O - 20070912 -9606 2422 FRA8D - - HGNC:3932 8 8q24.3 fragile site, aphidicolin type, common, fra(8)(q24.3) other FRA8D fragile site, aphidicolin type, common, fra(8)(q24.3) O - 20070912 -9606 2423 FRA8E - - HGNC:3933 8 8q24.1 fragile site, distamycin A type, rare, fra(8)(q24.1) other FRA8E fragile site, distamycin A type, rare, fra(8)(q24.1) O - 20070912 -9606 2425 FRA9A - - HGNC:3935 9 9p21 fragile site, folic acid type, rare, fra(9)(p21) other FRA9A fragile site, folic acid type, rare, fra(9)(p21) O - 20070912 -9606 2426 FRA9B - - HGNC:3936|MIM:136640 9 9q32 fragile site, folic acid type, rare, fra(9)(q32) other FRA9B fragile site, folic acid type, rare, fra(9)(q32) O - 20070912 -9606 2427 FRA9C - - HGNC:3937 9 9p21 fragile site, BrdU type, common, fra(9)(p21) other FRA9C fragile site, BrdU type, common, fra(9)(p21) O - 20070912 -9606 2428 FRA9D - - HGNC:3938 9 9q22.1 fragile site, aphidicolin type, common, fra(9)(q22.1) other FRA9D fragile site, aphidicolin type, common, fra(9)(q22.1) O - 20070912 -9606 2429 FRA9E - - HGNC:3939 9 9q32 fragile site, aphidicolin type, common, fra(9)(q32) other FRA9E fragile site, aphidicolin type, common, fra(9)(q32) O - 20100121 -9606 2430 FRA9F - - HGNC:3940 9 9q12 fragile site, 5-azacytidine type, common, fra(9)(q12) other FRA9F fragile site, 5-azacytidine type, common, fra(9)(q12) O - 20070912 -9606 2431 FRA10A - - HGNC:3829|MIM:136620 10 10q23.3 or 10q24.2 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) other FRA10A fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) O - 20070912 -9606 2432 FRA10B - - HGNC:3830 10 10q25.2 fragile site, BrdU type, rare, fra(10)(q25.2) other FRA10B fragile site, BrdU type, rare, fra(10)(q25.2) O - 20070912 -9606 2433 FRA10C - - HGNC:3831 10 10q21 fragile site, BrdU type, common, fra(10)(q21) other FRA10C fragile site, BrdU type, common, fra(10)(q21) O - 20070912 -9606 2434 FRA10D - - HGNC:3832 10 10q22.1 fragile site, aphidicolin type, common, fra(10)(q22.1) other FRA10D fragile site, aphidicolin type, common, fra(10)(q22.1) O - 20070912 -9606 2435 FRA10E - - HGNC:3833 10 10q25.2 fragile site, aphidicolin type, common, fra(10)(q25.2) other FRA10E fragile site, aphidicolin type, common, fra(10)(q25.2) O - 20070912 -9606 2436 FRA10F - - HGNC:3834 10 10q26.1 fragile site, aphidicolin type, common, fra(10)(q26.1) other FRA10F fragile site, aphidicolin type, common, fra(10)(q26.1) O - 20121209 -9606 2437 FRA10G - - HGNC:3835 10 10q11.2 fragile site, aphidicolin type, common, fra(10)(q11.2) other FRA10G fragile site, aphidicolin type, common, fra(10)(q11.2) O - 20080828 -9606 2438 FRA11A - - HGNC:3836 11 11q13.3 fragile site, folic acid type, rare, fra(11)(q13.3) other FRA11A fragile site, folic acid type, rare, fra(11)(q13.3) O - 20100121 -9606 2440 FRA11C - - HGNC:3838 11 11p15.1 fragile site, aphidicolin type, common, fra(11)(p15.1) other FRA11C fragile site, aphidicolin type, common, fra(11)(p15.1) O - 20070912 -9606 2441 FRA11D - - HGNC:3839 11 11p14.2 fragile site, aphidicolin type, common, fra(11)(p14.2) other FRA11D fragile site, aphidicolin type, common, fra(11)(p14.2) O - 20070912 -9606 2442 FRA11E - - HGNC:3840 11 11p13 fragile site, aphidicolin type, common, fra(11)(p13) other FRA11E fragile site, aphidicolin type, common, fra(11)(p13) O - 20070912 -9606 2443 FRA11F - - HGNC:3841 11 11q14.2 fragile site, aphidicolin type, common, fra(11)(q14.2) other FRA11F fragile site, aphidicolin type, common, fra(11)(q14.2) O - 20100121 -9606 2444 FRK - GTK|PTK5|RAK HGNC:3955|MIM:606573|Ensembl:ENSG00000111816|HPRD:05954|Vega:OTTHUMG00000015424 6 6q21-q22.3 fyn-related kinase protein-coding FRK fyn-related kinase O PTK5 protein tyrosine kinase 5|nuclear tyrosine protein kinase RAK|protein-tyrosine kinase 5|tyrosine-protein kinase FRK 20121230 -9606 2445 FRA11G - - HGNC:3842 11 11q23.3 fragile site, aphidicolin type, common, fra(11)(q23.3) other FRA11G fragile site, aphidicolin type, common, fra(11)(q23.3) O - 20070912 -9606 2446 FRA11H - - HGNC:3843 11 11q13 fragile site, aphidicolin type, common, fra(11)(q13) other FRA11H fragile site, aphidicolin type, common, fra(11)(q13) O - 20070912 -9606 2447 FRA11I - - HGNC:3844 11 11p15.1 fragile site, distamycin A type, rare, fra(11)(p15.1) other FRA11I fragile site, distamycin A type, rare, fra(11)(p15.1) O - 20070912 -9606 2448 FRA12A - - HGNC:3845|MIM:136630 12 12q13.1 fragile site, folic acid type, rare, fra(12)(q13.1) other FRA12A fragile site, folic acid type, rare, fra(12)(q13.1) O - 20110814 -9606 2449 FRA12B - - HGNC:3846 12 12q21.3 fragile site, aphidicolin type, common, fra(12)(q21.3) other FRA12B fragile site, aphidicolin type, common, fra(12)(q21.3) O - 20070912 -9606 2450 FRA12C - - HGNC:3847 12 12q24.2 fragile site, BrdU type, rare, fra(12)(q24.2) other FRA12C fragile site, BrdU type, rare, fra(12)(q24.2) O - 20070912 -9606 2451 FRA12D - - HGNC:3848 12 12q24.13 fragile site, folic acid type, rare, fra(12)(q24.13) other FRA12D fragile site, folic acid type, rare, fra(12)(q24.13) O - 20070912 -9606 2452 FRA12E - - HGNC:3849 12 12q24 fragile site, aphidicolin type, common, fra(12)(q24) other FRA12E fragile site, aphidicolin type, common, fra(12)(q24) O - 20070912 -9606 2453 FRA13A - - HGNC:3850 13 13q13.2 fragile site, aphidicolin type, common, fra(13)(q13.2) other FRA13A fragile site, aphidicolin type, common, fra(13)(q13.2) O - 20070912 -9606 2454 FRA13B - - HGNC:3851 13 13q21 fragile site, BrdU type, common, fra(13)(q21) other FRA13B fragile site, BrdU type, common, fra(13)(q21) O - 20070912 -9606 2455 FRA13C - - HGNC:3852 13 13q21.2 fragile site, aphidicolin type, common, fra(13)(q21.2) other FRA13C fragile site, aphidicolin type, common, fra(13)(q21.2) O - 20070912 -9606 2456 FRA13D - - HGNC:3853 13 13q32 fragile site, aphidicolin type, common, fra(13)(q32) other FRA13D fragile site, aphidicolin type, common, fra(13)(q32) O - 20070912 -9606 2457 FRA14B - - HGNC:3854 14 14q23 fragile site, aphidicolin type, common, fra(14)(q23) other FRA14B fragile site, aphidicolin type, common, fra(14)(q23) O - 20070912 -9606 2458 FRA14C - - HGNC:3855 14 14q24.1 fragile site, aphidicolin type, common, fra(14)(q24.1) other FRA14C fragile site, aphidicolin type, common, fra(14)(q24.1) O - 20070912 -9606 2459 FRA15A - - HGNC:3856 15 15q22 fragile site, aphidicolin type, common, fra(15)(q22) other FRA15A fragile site, aphidicolin type, common, fra(15)(q22) O - 20070912 -9606 2460 FRA16A - C16DELp12.1 HGNC:3857|MIM:136570 16 16p13.11 fragile site, folic acid type, rare, fra(16)(p13.11) other FRA16A fragile site, folic acid type, rare, fra(16)(p13.11) O - 20120622 -9606 2461 FRA16B - - HGNC:3858|MIM:136580 16 16q22.1 fragile site, distamycin A type, rare, fra(16)(q22.1) other FRA16B fragile site, distamycin A type, rare, fra(16)(q22.1) O - 20070912 -9606 2462 FRA16C - - HGNC:3859 16 16q22.1 fragile site, aphidicolin type, common, fra(16)(q22.1) other FRA16C fragile site, aphidicolin type, common, fra(16)(q22.1) O - 20070912 -9606 2463 FRA16D - - HGNC:3860 16 16q23.2 fragile site, aphidicolin type, common, fra(16)(q23.2) other FRA16D fragile site, aphidicolin type, common, fra(16)(q23.2) O - 20100121 -9606 2464 FRA16E - - HGNC:3861 16 16p12.1 fragile site, distamycin A type, rare, fra(16)(p12.1) other FRA16E fragile site, distamycin A type, rare, fra(16)(p12.1) O - 20070912 -9606 2465 FRA17A - - HGNC:3862|MIM:136660 17 17p12 fragile site, distamycin A type, rare, fra(17)(p12) other FRA17A fragile site, distamycin A type, rare, fra(17)(p12) O - 20070912 -9606 2466 FRA17B - - HGNC:3863 17 17q23.1 fragile site, aphidicolin type, common, fra(17)(q23.1) other FRA17B fragile site, aphidicolin type, common, fra(17)(q23.1) O - 20070912 -9606 2467 FRA18A - - HGNC:3864 18 18q12.2 fragile site, aphidicolin type, common, fra(18)(q12.2) other FRA18A fragile site, aphidicolin type, common, fra(18)(q12.2) O - 20070912 -9606 2468 FRA18B - - HGNC:3865 18 18q21.3 fragile site, aphidicolin type, common, fra(18)(q21.3) other FRA18B fragile site, aphidicolin type, common, fra(18)(q21.3) O - 20070912 -9606 2469 FRA19A - - HGNC:3866 19 19q13 fragile site, 5-azacytidine type, common, fra(19)(q13) other FRA19A fragile site, 5-azacytidine type, common, fra(19)(q13) O - 20070912 -9606 2470 FRA19B - - HGNC:3867 19 19p13 fragile site, folic acid type, rare, fra(19)(p13) other FRA19B fragile site, folic acid type, rare, fra(19)(p13) O - 20070912 -9606 2471 FRA20A - - HGNC:3881|MIM:136590 20 20p11.23 fragile site, folic acid type, rare, fra(20)(p11.23) other FRA20A fragile site, folic acid type, rare, fra(20)(p11.23) O - 20070912 -9606 2472 FRA20B - - HGNC:3882 20 20p12.2 fragile site, aphidicolin type, common, fra(20)(p12.2) other FRA20B fragile site, aphidicolin type, common, fra(20)(p12.2) O - 20070912 -9606 2473 FRA22A - - HGNC:3883 22 22q13 fragile site, folic acid type, rare, fra(22)(q13) other FRA22A fragile site, folic acid type, rare, fra(22)(q13) O - 20070912 -9606 2474 FRA22B - - HGNC:3884 22 22q12.2 fragile site, aphidicolin type, common, fra(22)(q12.2) other FRA22B fragile site, aphidicolin type, common, fra(22)(q12.2) O - 20070912 -9606 2475 MTOR - FRAP|FRAP1|FRAP2|RAFT1|RAPT1 HGNC:3942|MIM:601231|Ensembl:ENSG00000198793|HPRD:03134|Vega:OTTHUMG00000002001 1 1p36.2 mechanistic target of rapamycin (serine/threonine kinase) protein-coding MTOR mechanistic target of rapamycin (serine/threonine kinase) O FK506 binding protein 12-rapamycin associated protein 1|FK506 binding protein 12-rapamycin associated protein 2|FK506-binding protein 12-rapamycin complex-associated protein 1|FKBP-rapamycin associated protein|FKBP12-rapamycin complex-associated protein 1|mammalian target of rapamycin|rapamycin and FKBP12 target 1|rapamycin associated protein FRAP2|rapamycin target protein 1|serine/threonine-protein kinase mTOR 20121230 -9606 2477 FRAXA - FMR1 HGNC:3945 X Xq27.3 fragile site, folic acid type, rare, fra(X)(q27.3) A (macroorchidism, mental retardation) other FRAXA fragile site, folic acid type, rare, fra(X)(q27.3) A (macroorchidism, mental retardation) O - 20111016 -9606 2478 FRAXB - - HGNC:3946 X Xp22.31 fragile site, aphidicolin type, common, fra(X)(p22.31) B other FRAXB fragile site, aphidicolin type, common, fra(X)(p22.31) B O - 20070912 -9606 2479 FRAXC - - HGNC:3947 X Xq22.1 fragile site, aphidicolin type, common, fra(X)(q22.1) C other FRAXC fragile site, aphidicolin type, common, fra(X)(q22.1) C O - 20070912 -9606 2480 FRAXD - - HGNC:3948 X Xq27.2 fragile site, aphidicolin type, common, fra(X)(q27.2) D other FRAXD fragile site, aphidicolin type, common, fra(X)(q27.2) D O - 20070912 -9606 2481 FRAXE - FMR2 HGNC:3949 X Xq28 fragile site, folic acid type, rare, fra(X)(q28) E other FRAXE fragile site, folic acid type, rare, fra(X)(q28) E O - 20111127 -9606 2483 FRG1 - FRG1A|FSG1 HGNC:3954|MIM:601278|Ensembl:ENSG00000109536|HPRD:03176|Vega:OTTHUMG00000160202 4 4q35 FSHD region gene 1 protein-coding FRG1 FSHD region gene 1 O FSHD region gene 1 protein|facioscapulohumeral muscular dystrophy region gene-1|protein FRG1 20121230 -9606 2487 FRZB - FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ HGNC:3959|MIM:605083|Ensembl:ENSG00000162998|HPRD:07282|Vega:OTTHUMG00000132597 2 2qter frizzled-related protein protein-coding FRZB frizzled-related protein O frezzled|frizzled homolog-related|frizzled-related protein 1|sFRP-3|secreted frizzled-related protein 3 20121230 -9606 2488 FSHB - - HGNC:3964|MIM:136530|Ensembl:ENSG00000131808|HPRD:00644|Vega:OTTHUMG00000166146 11 11p13 follicle stimulating hormone, beta polypeptide protein-coding FSHB follicle stimulating hormone, beta polypeptide O FSH-B|FSH-beta|follicle-stimulating hormone beta subunit|follitropin beta chain|follitropin subunit beta|follitropin, beta chain 20121230 -9606 2489 FSHMD1A - FMD|FSHD|FSHD1A|FSHMD HGNC:3966|MIM:158900 4 4q35 facioscapulohumeral muscular dystrophy 1A unknown FSHMD1A facioscapulohumeral muscular dystrophy 1A O - 20120708 -9606 2490 FSHMD1B - FSHD1B HGNC:3967|MIM:158901 - - facioscapulohumeral muscular dystrophy 1B unknown FSHMD1B facioscapulohumeral muscular dystrophy 1B O - 20110714 -9606 2491 CENPI RP5-1188J21.1 CENP-I|FSHPRH1|LRPR1|Mis6 HGNC:3968|MIM:300065|Ensembl:ENSG00000102384|HPRD:02089|Vega:OTTHUMG00000022018 X Xq22.1 centromere protein I protein-coding CENPI centromere protein I O FSH primary response 1|FSH primary response protein 1|follicle-stimulating hormone primary response protein|interphase centromere complex protein 19|leucine-rich primary response protein 1 20121230 -9606 2492 FSHR - FSHRO|LGR1|ODG1 HGNC:3969|MIM:136435|Ensembl:ENSG00000170820|HPRD:00639|Vega:OTTHUMG00000129259 2 2p21-p16 follicle stimulating hormone receptor protein-coding FSHR follicle stimulating hormone receptor O FSH receptor|follicle-stimulating hormone receptor|follitropin receptor 20121230 -9606 2494 NR5A2 - B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 HGNC:7984|MIM:604453|Ensembl:ENSG00000116833|HPRD:06830|Vega:OTTHUMG00000035635 1 1q32.1 nuclear receptor subfamily 5, group A, member 2 protein-coding NR5A2 nuclear receptor subfamily 5, group A, member 2 O CYP7A promoter-binding factor|alpha-1-fetoprotein transcription factor|b1-binding factor, hepatocyte transcription factor which activates enhancer II of hepatitis B virus|fetoprotein-alpha 1 (AFP) transcription factor|hepatocytic transcription factor|liver nuclear receptor homolog-1 variant 2|liver receptor homolog 1|liver receptor homolog-1|nuclear receptor NR5A2|nuclear receptor subfamily 5 group A member 2 20121230 -9606 2495 FTH1 OK/SW-cl.84 FHC|FTH|FTHL6|PIG15|PLIF HGNC:3976|MIM:134770|Ensembl:ENSG00000167996|HPRD:00615|Vega:OTTHUMG00000166217 11 11q13 ferritin, heavy polypeptide 1 protein-coding FTH1 ferritin, heavy polypeptide 1 O apoferritin|cell proliferation-inducing gene 15 protein|ferritin H subunit|ferritin heavy chain|placenta immunoregulatory factor|proliferation-inducing protein 15 20121230 -9606 2496 FTH1P1 - FTHL1 HGNC:3979 1 1p34.3 ferritin, heavy polypeptide 1 pseudogene pseudo FTH1P1 ferritin, heavy polypeptide 1 pseudogene O - 20121230 -9606 2497 FTH1P2 - FTHL2 HGNC:3989 1 1q42.13 ferritin, heavy polypeptide 1 pseudogene 2 pseudo FTH1P2 ferritin, heavy polypeptide 1 pseudogene 2 O - 20121230 -9606 2498 FTH1P3 - FTHL3|FTHL3P HGNC:3990 2 2p23.3 ferritin, heavy polypeptide 1 pseudogene 3 pseudo FTH1P3 ferritin, heavy polypeptide 1 pseudogene 3 O - 20121230 -9606 2499 FTH1P4 - FTHL4 HGNC:3991 3 3q21.3 ferritin, heavy polypeptide 1 pseudogene 4 pseudo FTH1P4 ferritin, heavy polypeptide 1 pseudogene 4 O - 20121230 -9606 2500 FTH1P7 - FTHL7 HGNC:3994 13 13q12.11 ferritin, heavy polypeptide 1 pseudogene 7 pseudo FTH1P7 ferritin, heavy polypeptide 1 pseudogene 7 O - 20121230 -9606 2501 FTH1P8 - FTHL8 HGNC:3995 X Xq28 ferritin, heavy polypeptide 1 pseudogene 8 pseudo FTH1P8 ferritin, heavy polypeptide 1 pseudogene 8 O - 20121230 -9606 2502 FTH1P10 - FTHL10 HGNC:3980 5 5p15.1 ferritin, heavy polypeptide 1 pseudogene 10 pseudo FTH1P10 ferritin, heavy polypeptide 1 pseudogene 10 O - 20121230 -9606 2503 FTH1P11 - FTHL11 HGNC:3981 8 8q21.13 ferritin, heavy polypeptide 1 pseudogene 11 pseudo FTH1P11 ferritin, heavy polypeptide 1 pseudogene 11 O - 20121230 -9606 2504 FTH1P12 - FTHL12 HGNC:3982 9 9p22.3 ferritin, heavy polypeptide 1 pseudogene 12 pseudo FTH1P12 ferritin, heavy polypeptide 1 pseudogene 12 O - 20121230 -9606 2507 FTH1P15 - FTHL15 HGNC:3985 6 6p12 ferritin, heavy polypeptide 1 pseudogene 15 pseudo FTH1P15 ferritin, heavy polypeptide 1 pseudogene 15 O - 20121230 -9606 2508 FTH1P16 - FTH2|FTHL16 HGNC:3986|HPRD:17023 11 11q13 ferritin, heavy polypeptide 1 pseudogene 16 pseudo FTH1P16 ferritin, heavy polypeptide 1 pseudogene 16 O - 20121230 -9606 2509 FTH1P5 - FTHL5|FTHP1 HGNC:3996 6 6p12.3 ferritin, heavy polypeptide 1 pseudogene 5 pseudo FTH1P5 ferritin, heavy polypeptide 1 pseudogene 5 O - 20121230 -9606 2510 FTH1P21 - FTHL21|FTHP2 HGNC:3997 4 4q32.1 ferritin, heavy polypeptide 1 pseudogene 21 pseudo FTH1P21 ferritin, heavy polypeptide 1 pseudogene 21 O - 20121230 -9606 2512 FTL - NBIA3 HGNC:3999|MIM:134790|Ensembl:ENSG00000087086|HPRD:00616 19 19q13.33 ferritin, light polypeptide protein-coding FTL ferritin, light polypeptide O ferritin L subunit|ferritin L-chain|ferritin light chain|ferritin light polypeptide-like 3 20121230 -9606 2515 ADAM2 - CRYN1|CRYN2|CT15|FTNB|PH-30b|PH30 HGNC:198|MIM:601533|Ensembl:ENSG00000104755|HPRD:03322|Vega:OTTHUMG00000164041 8 8p11.2 ADAM metallopeptidase domain 2 protein-coding ADAM2 ADAM metallopeptidase domain 2 O ADAM 2|PH-30|PH30-beta|cancer/testis antigen 15|disintegrin and metalloproteinase domain-containing protein 2|fertilin beta|fertilin subunit beta 20121230 -9606 2516 NR5A1 RP11-101K10.1 AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXY3 HGNC:7983|MIM:184757|Ensembl:ENSG00000136931|HPRD:01702|Vega:OTTHUMG00000020655 9 9q33 nuclear receptor subfamily 5, group A, member 1 protein-coding NR5A1 nuclear receptor subfamily 5, group A, member 1 O STF-1|adrenal 4 binding protein|adrenal 4-binding protein|fushi tarazu factor homolog 1|nuclear receptor AdBP4|steroid hormone receptor Ad4BP|steroidogenic factor 1|steroidogenic factor 1 nuclear receptor|steroidogenic factor-1 20121230 -9606 2517 FUCA1 RP11-45G17.1 FUCA HGNC:4006|MIM:612280|Ensembl:ENSG00000179163|HPRD:01974|Vega:OTTHUMG00000002965 1 1p34 fucosidase, alpha-L- 1, tissue protein-coding FUCA1 fucosidase, alpha-L- 1, tissue O alpha-L-fucosidase 1|alpha-L-fucosidase I|alpha-L-fucoside fucohydrolase 1|tissue alpha-L-fucosidase 20121230 -9606 2518 FUCA1P1 - FUCA1P HGNC:4007 2 2q31-q32 fucosidase, alpha-L- 1, tissue pseudogene 1 pseudo FUCA1P1 fucosidase, alpha-L- 1, tissue pseudogene 1 O - 20121230 -9606 2519 FUCA2 RP1-20N2.5 dJ20N2.5 HGNC:4008|MIM:136820|Ensembl:ENSG00000001036|HPRD:00649|Vega:OTTHUMG00000015728 6 6q24 fucosidase, alpha-L- 2, plasma protein-coding FUCA2 fucosidase, alpha-L- 2, plasma O alpha-L-fucosidase 2|alpha-L-fucoside fucohydrolase 2|plasma alpha-L-fucosidase 20121230 -9606 2520 GAST - GAS HGNC:4164|MIM:137250|Ensembl:ENSG00000184502|HPRD:00671|Vega:OTTHUMG00000133496 17 17q21 gastrin protein-coding GAST gastrin O - 20121230 -9606 2521 FUS - ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS HGNC:4010|MIM:137070|Ensembl:ENSG00000089280|HPRD:00660|Vega:OTTHUMG00000132395 16 16p11.2 fused in sarcoma protein-coding FUS fused in sarcoma O 75 kDa DNA-pairing protein|RNA-binding protein FUS|fus-like protein|fusion gene in myxoid liposarcoma|heterogeneous nuclear ribonucleoprotein P2|oncogene FUS|oncogene TLS|translocated in liposarcoma protein 20121230 -9606 2522 FUSE - - HGNC:4011|MIM:174750 10 - polykaryocytosis promoter unknown FUSE polykaryocytosis promoter O - 20110215 -9606 2523 FUT1 - H|HH|HSC HGNC:4012|MIM:211100|Ensembl:ENSG00000174951|HPRD:07186 19 19q13.3 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) protein-coding FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) O 2-alpha-L-fucosyltransferase|GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 1|alpha (1,2) fucosyltransferase|alpha(1,2)FT 1|blood group H alpha 2-fucosyltransferase|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase)|galactoside 2-alpha-L-fucosyltransferase 1 20121230 -9606 2524 FUT2 - B12QTL1|SE|SEC2|Se2|sej HGNC:4013|MIM:182100|Ensembl:ENSG00000176920|HPRD:01629|Vega:OTTHUMG00000164427 19 19q13.3 fucosyltransferase 2 (secretor status included) protein-coding FUT2 fucosyltransferase 2 (secretor status included) O GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 2|alpha (1,2) fucosyltransferase|alpha(1,2)FT 2|alpha(1,2)FT2|galactoside 2-alpha-L-fucosyltransferase 2|secretor blood group alpha-2-fucosyltransferase|secretor factor 20121230 -9606 2525 FUT3 - CD174|FT3B|FucT-III|LE|Les HGNC:4014|MIM:111100|Ensembl:ENSG00000171124|HPRD:00196|Vega:OTTHUMG00000180614 19 19p13.3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) protein-coding FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) O Lewis FT|alpha-(1,3/1,4)-fucosyltransferase|blood group Lewis alpha-4-fucosyltransferase|fucosyltransferase III|galactoside 3(4)-L-fucosyltransferase 20121230 -9606 2526 FUT4 - CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 HGNC:4015|MIM:104230|Ensembl:ENSG00000196371|HPRD:00083|Vega:OTTHUMG00000167795 11 11q21 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) protein-coding FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) O ELAM ligand fucosyltransferase|ELAM-1 ligand fucosyltransferase|Lewis X|alpha-(1,3)-fucosyltransferase|fucT-IV|fucosyltransferase IV|galactoside 3-L-fucosyltransferase|stage-specific embryonic antigen 1 20121230 -9606 2527 FUT5 - FUC-TV HGNC:4016|MIM:136835|Ensembl:ENSG00000130383|HPRD:00650|Vega:OTTHUMG00000180616 19 19p13.3 fucosyltransferase 5 (alpha (1,3) fucosyltransferase) protein-coding FUT5 fucosyltransferase 5 (alpha (1,3) fucosyltransferase) O alpha (1,3) fucosyltransferase|alpha-(1,3)-fucosyltransferase|fucT-V|fucosyltransferase V|galactoside 3-L-fucosyltransferase 20121230 -9606 2528 FUT6 - FCT3A|FT1A|Fuc-TVI|FucT-VI HGNC:4017|MIM:136836|Ensembl:ENSG00000156413|HPRD:00651|Vega:OTTHUMG00000167335 19 19p13.3 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) protein-coding FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) O alpha-(1,3)-fucosyltransferase|fucosyltransferase VI|galactoside 3-L-fucosyltransferase 20121230 -9606 2529 FUT7 - FucT-VII HGNC:4018|MIM:602030|Ensembl:ENSG00000180549|HPRD:03611|Vega:OTTHUMG00000020964 9 9q34.3 fucosyltransferase 7 (alpha (1,3) fucosyltransferase) protein-coding FUT7 fucosyltransferase 7 (alpha (1,3) fucosyltransferase) O alpha-(1,3)-fucosyltransferase|fuc-TVII|fucosyltransferase VII|galactoside 3-L-fucosyltransferase|selectin ligand synthase|selectin-ligand synthase 20121230 -9606 2530 FUT8 - - HGNC:4019|MIM:602589|Ensembl:ENSG00000033170|HPRD:03994|Vega:OTTHUMG00000142818 14 14q24.3 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) protein-coding FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) O GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,6-fucosyltransferase|GDP-fucose--glycoprotein fucosyltransferase|alpha-(1,6)-fucosyltransferase|alpha1-6FucT|glycoprotein 6-alpha-L-fucosyltransferase 20121230 -9606 2531 KDSR - DHSR|FVT1|SDR35C1 HGNC:4021|MIM:136440|Ensembl:ENSG00000119537|HPRD:00640|Vega:OTTHUMG00000132792 18 18q21.3 3-ketodihydrosphingosine reductase protein-coding KDSR 3-ketodihydrosphingosine reductase O 3-dehydrosphinganine reductase|FVT-1|KDS reductase|follicular lymphoma variant translocation 1|follicular variant translocation protein 1|short chain dehydrogenase/reductase family 35C, member 1 20121230 -9606 2532 DARC CTA-134P22.3 CCBP1|CD234|Dfy|FY|GPD|GpFy|WBCQ1 HGNC:4035|MIM:613665|Ensembl:ENSG00000213088|HPRD:00192|Vega:OTTHUMG00000037182 1 1q21-q22 Duffy blood group, chemokine receptor protein-coding DARC Duffy blood group, chemokine receptor O Duffy antigen/chemokine receptor|Duffy blood group antigen|Fy glycoprotein|glycoprotein D|plasmodium vivax receptor 20121230 -9606 2533 FYB - ADAP|PRO0823|SLAP-130 HGNC:4036|MIM:602731|Ensembl:ENSG00000082074|HPRD:04107|Vega:OTTHUMG00000162071 5 5p13.1 FYN binding protein protein-coding FYB FYN binding protein O FYB-120/130|FYN-T-binding protein|FYN-binding protein|SLP-76-associated phosphoprotein|adhesion and degranulation-promoting adaptor protein|p120/p130 20121230 -9606 2534 FYN RP1-66H14.1 SLK|SYN|p59-FYN HGNC:4037|MIM:137025|Ensembl:ENSG00000010810|HPRD:00655|Vega:OTTHUMG00000016305 6 6q21 FYN oncogene related to SRC, FGR, YES protein-coding FYN FYN oncogene related to SRC, FGR, YES O OKT3-induced calcium influx regulator|c-syn protooncogene|proto-oncogene Syn|proto-oncogene c-Fyn|src-like kinase|src/yes-related novel|tyrosine kinase p59fyn(T)|tyrosine-protein kinase Fyn 20121230 -9606 2535 FZD2 - Fz2|fz-2|fzE2|hFz2 HGNC:4040|MIM:600667|Ensembl:ENSG00000180340|HPRD:02813|Vega:OTTHUMG00000181819 17 17q21.1 frizzled family receptor 2 protein-coding FZD2 frizzled family receptor 2 O frizzled 2, seven transmembrane spanning receptor|frizzled homolog 2|frizzled-2 20121230 -9606 2537 IFI6 RP11-288L9.2 6-16|FAM14C|G1P3|IFI-6-16|IFI616 HGNC:4054|MIM:147572|Ensembl:ENSG00000126709|HPRD:00959|Vega:OTTHUMG00000003518 1 1p35 interferon, alpha-inducible protein 6 protein-coding IFI6 interferon, alpha-inducible protein 6 O interferon alpha-inducible protein 6|interferon, alpha-inducible protein clone IFI-6-16|interferon-induced protein 6-16 20121230 -9606 2538 G6PC - G6PC1|G6PT|GSD1|GSD1a HGNC:4056|MIM:613742|Ensembl:ENSG00000131482|HPRD:01983|Vega:OTTHUMG00000180657 17 17q21 glucose-6-phosphatase, catalytic subunit protein-coding G6PC glucose-6-phosphatase, catalytic subunit O G-6-Pase|G6Pase|G6Pase-alpha|glucose-6-phosphatase|glucose-6-phosphatase alpha 20121230 -9606 2539 G6PD - G6PD1 HGNC:4057|MIM:305900|Ensembl:ENSG00000160211|HPRD:02377|Vega:OTTHUMG00000024237 X Xq28 glucose-6-phosphate dehydrogenase protein-coding G6PD glucose-6-phosphate dehydrogenase O glucose-6-phosphate 1-dehydrogenase|glucose-6-phosphate dehydrogenase, G6PD 20121230 -9606 2540 G6PDL - - HGNC:4058|MIM:138110 17 - glucose-6-phosphate dehydrogenase-like protein-coding G6PDL glucose-6-phosphate dehydrogenase-like O - 20080828 -9606 2541 G6PR - GSD1aSP HGNC:4059 - - glucose-6-phosphatase regulator protein-coding G6PR glucose-6-phosphatase regulator O glucose-6-phosphatase, regulatory 20080828 -9606 2542 SLC37A4 PRO0685 G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|TRG-19|TRG19 HGNC:4061|MIM:602671|HPRD:04052 11 11q23.3 solute carrier family 37 (glucose-6-phosphate transporter), member 4 protein-coding SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4 O glucose-5-phosphate transporter|glucose-6-phosphatase, transport (glucose) protein 3|glucose-6-phosphatase, transport (glucose-6-phosphate) protein 1|glucose-6-phosphatase, transport (phosphate/pyrophosphate) protein 2|glucose-6-phosphate translocase|microsomal glucose-6-phosphate transporter|solute carrier family 37 member 4|transformation-related gene 19 protein 20121230 -9606 2543 GAGE1 - CT4.1|GAGE-1 HGNC:4098|MIM:300594|Ensembl:ENSG00000205777|Ensembl:ENSG00000255738|HPRD:05028|Vega:OTTHUMG00000024150 X Xp11.23 G antigen 1 protein-coding GAGE1 G antigen 1 O MZ2-F antigen|cancer/testis antigen 4.1|cancer/testis antigen family 4, member 1 20121230 -9606 2546 G7P1 - - HGNC:4064|MIM:148750 7 7q22-q32 kinase-like protein protein-coding G7P1 kinase-like protein O - 20080828 -9606 2547 XRCC6 CTA-216E10.7 CTC75|CTCBF|G22P1|KU70|ML8|TLAA HGNC:4055|MIM:152690|Ensembl:ENSG00000196419|HPRD:01071|Vega:OTTHUMG00000151190 22 22q13.2 X-ray repair complementing defective repair in Chinese hamster cells 6 protein-coding XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 O 5'-dRP lyase Ku70|5'-deoxyribose-5-phosphate lyase Ku70|70 kDa subunit of Ku antigen|ATP-dependent DNA helicase 2 subunit 1|ATP-dependent DNA helicase II 70 kDa subunit|ATP-dependent DNA helicase II, 70 kDa subunit|CTC box binding factor 75 kDa subunit|CTC box-binding factor 75 kDa subunit|DNA repair protein XRCC6|Ku autoantigen p70 subunit|Ku autoantigen, 70kDa|X-ray repair cross-complementing protein 6|lupus Ku autoantigen protein p70|thyroid autoantigen 70kD (Ku antigen)|thyroid autoantigen 70kDa (Ku antigen)|thyroid-lupus autoantigen p70 20121230 -9606 2548 GAA - LYAG HGNC:4065|MIM:606800|Ensembl:ENSG00000171298|HPRD:06006|Vega:OTTHUMG00000177537 17 17q25.2-q25.3 glucosidase, alpha; acid protein-coding GAA glucosidase, alpha; acid O acid maltase|aglucosidase alfa|lysosomal alpha-glucosidase 20121230 -9606 2549 GAB1 - - HGNC:4066|MIM:604439|Ensembl:ENSG00000109458|HPRD:05116|Vega:OTTHUMG00000161432 4 4q31.21 GRB2-associated binding protein 1 protein-coding GAB1 GRB2-associated binding protein 1 O GRB2-associated binder 1|GRB2-associated-binding protein 1|growth factor receptor bound protein 2-associated protein 1 20121230 -9606 2550 GABBR1 DAAP-188P13.3 GABABR1|GABBR1-3|GB1|GPRC3A|dJ271M21.1.1|dJ271M21.1.2 HGNC:4070|MIM:603540|Ensembl:ENSG00000204681|HPRD:04644|Vega:OTTHUMG00000031095 6 6p21.31 gamma-aminobutyric acid (GABA) B receptor, 1 protein-coding GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 O GABA-BR1|GABAB, subunit 1c|gamma-aminobutyric acid type B receptor subunit 1|seven transmembrane helix receptor 20121230 -9606 2551 GABPA - E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 HGNC:4071|MIM:600609|Ensembl:ENSG00000154727|HPRD:11793|Vega:OTTHUMG00000078443 21 21q21.3 GA binding protein transcription factor, alpha subunit 60kDa protein-coding GABPA GA binding protein transcription factor, alpha subunit 60kDa O GA binding protein transcription factor alpha subunit 60kDa|GA-binding protein alpha chain|GABP subunit alpha|human nuclear respiratory factor-2 subunit alpha|nuclear respiratory factor 2 alpha subunit|nuclear respiratory factor 2 subunit alpha|transcription factor E4TF1-60 20121230 -9606 2553 GABPB1 - BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB2|NRF2B1|NRF2B2 HGNC:4074|MIM:600610|Ensembl:ENSG00000104064|HPRD:15975|Vega:OTTHUMG00000131642 15 15q21.2 GA binding protein transcription factor, beta subunit 1 protein-coding GABPB1 GA binding protein transcription factor, beta subunit 1 O GA binding protein transcription factor beta subunit 1 transcript variant gamma-2|GA-binding protein subunit beta-1|GABP subunit beta-2|GABPB-1|nuclear respiratory factor 2|transcription factor E4TF1-47|transcription factor E4TF1-53 20121230 -9606 2554 GABRA1 - ECA4|EJM|EJM5 HGNC:4075|MIM:137160|Ensembl:ENSG00000022355|HPRD:00662|Vega:OTTHUMG00000163586 5 5q34 gamma-aminobutyric acid (GABA) A receptor, alpha 1 protein-coding GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 O GABA(A) receptor subunit alpha-1|GABA(A) receptor, alpha 1|gamma-aminobutyric acid receptor subunit alpha-1 20121230 -9606 2555 GABRA2 - - HGNC:4076|MIM:137140|Ensembl:ENSG00000151834|HPRD:11747|Vega:OTTHUMG00000044266 4 4p12 gamma-aminobutyric acid (GABA) A receptor, alpha 2 protein-coding GABRA2 gamma-aminobutyric acid (GABA) A receptor, alpha 2 O GABA(A) receptor subunit alpha-2|GABA(A) receptor, alpha 2|gamma-aminobutyric acid receptor subunit alpha-2 20121230 -9606 2556 GABRA3 - - HGNC:4077|MIM:305660|Ensembl:ENSG00000011677|HPRD:02375|Vega:OTTHUMG00000024183 X Xq28 gamma-aminobutyric acid (GABA) A receptor, alpha 3 protein-coding GABRA3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 O GABA(A) receptor subunit alpha-3|GABA(A) receptor, alpha 3|gamma-aminobutyric acid receptor subunit alpha-3|gamma-animobutyric acid (GABA) A receptor, alpha 3 20121230 -9606 2557 GABRA4 - - HGNC:4078|MIM:137141|Ensembl:ENSG00000109158|HPRD:08839|Vega:OTTHUMG00000099431 4 4p12 gamma-aminobutyric acid (GABA) A receptor, alpha 4 protein-coding GABRA4 gamma-aminobutyric acid (GABA) A receptor, alpha 4 O GABA(A) receptor, alpha 4|gamma-aminobutyric acid receptor subunit alpha-4 20121230 -9606 2558 GABRA5 - - HGNC:4079|MIM:137142|Ensembl:ENSG00000186297|HPRD:08840|Vega:OTTHUMG00000171824 15 15q12 gamma-aminobutyric acid (GABA) A receptor, alpha 5 protein-coding GABRA5 gamma-aminobutyric acid (GABA) A receptor, alpha 5 O GABA(A) receptor subunit alpha-5|gamma-aminobutyric acid receptor subunit alpha-5 20121230 -9606 2559 GABRA6 - - HGNC:4080|MIM:137143|Ensembl:ENSG00000145863|HPRD:08841|Vega:OTTHUMG00000130351 5 5q34 gamma-aminobutyric acid (GABA) A receptor, alpha 6 protein-coding GABRA6 gamma-aminobutyric acid (GABA) A receptor, alpha 6 O GABA subunit A receptor alpha 6|GABA(A) receptor subunit alpha-6|GABA(A) receptor, alpha 6|gamma-aminobutyric acid receptor subunit alpha-6 20121230 -9606 2560 GABRB1 - - HGNC:4081|MIM:137190|Ensembl:ENSG00000163288|HPRD:15924|Vega:OTTHUMG00000044269 4 4p12 gamma-aminobutyric acid (GABA) A receptor, beta 1 protein-coding GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 O GABA(A) receptor subunit beta-1|GABA(A) receptor, beta 1|gamma-aminobutyric acid receptor subunit beta-1 20121230 -9606 2561 GABRB2 - - HGNC:4082|MIM:600232|Ensembl:ENSG00000145864|HPRD:02578|Vega:OTTHUMG00000130349 5 5q34 gamma-aminobutyric acid (GABA) A receptor, beta 2 protein-coding GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2 O GABA(A) receptor subunit beta-2|GABA(A) receptor, beta 2|gamma-aminobutyric acid A receptor beta 2|gamma-aminobutyric acid receptor subunit beta-2 20121230 -9606 2562 GABRB3 - ECA5 HGNC:4083|MIM:137192|Ensembl:ENSG00000166206|HPRD:08844|Vega:OTTHUMG00000129231 15 15q12 gamma-aminobutyric acid (GABA) A receptor, beta 3 protein-coding GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 O GABA(A) receptor beta-3 subunit|GABA(A) receptor, beta 3|GABA-alpha receptor beta-2 subunit|GABAA receptor beta-3 subunit|gamma-aminobutyric acid receptor subunit beta-3 20121230 -9606 2563 GABRD - EIG10|EJM7|GEFSP5 HGNC:4084|MIM:137163|Ensembl:ENSG00000187730|HPRD:08842|Vega:OTTHUMG00000041064 1 1p36.3 gamma-aminobutyric acid (GABA) A receptor, delta protein-coding GABRD gamma-aminobutyric acid (GABA) A receptor, delta O GABA(A) receptor subunit delta|GABA(A) receptor, delta|GABA-A receptor, delta polypeptide|gamma-aminobutyric acid receptor subunit delta 20121230 -9606 2564 GABRE - - HGNC:4085|MIM:300093|Ensembl:ENSG00000102287|HPRD:02104|Vega:OTTHUMG00000024176 X Xq28 gamma-aminobutyric acid (GABA) A receptor, epsilon protein-coding GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon O GABA(A) receptor subunit epsilon|GABA(A) receptor, epsilon|gamma-aminobutyric acid receptor subunit epsilon 20121230 -9606 2565 GABRG1 - - HGNC:4086|MIM:137166|Ensembl:ENSG00000163285|HPRD:15923|Vega:OTTHUMG00000128609 4 4p12 gamma-aminobutyric acid (GABA) A receptor, gamma 1 protein-coding GABRG1 gamma-aminobutyric acid (GABA) A receptor, gamma 1 O GABA(A) receptor subunit gamma-1|GABA(A) receptor, gamma|gamma-1 polypeptide|gamma-aminobutyric acid receptor subunit gamma-1 20121230 -9606 2566 GABRG2 - CAE2|ECA2|GEFSP3 HGNC:4087|MIM:137164|Ensembl:ENSG00000113327|HPRD:00663|Vega:OTTHUMG00000130350 5 5q34 gamma-aminobutyric acid (GABA) A receptor, gamma 2 protein-coding GABRG2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 O GABA(A) receptor subunit gamma-2|GABA(A) receptor, gamma 2|gamma-aminobutyric acid receptor subunit gamma-2 20121230 -9606 2567 GABRG3 - - HGNC:4088|MIM:600233|Ensembl:ENSG00000182256|HPRD:02579|Vega:OTTHUMG00000044462 15 15q12 gamma-aminobutyric acid (GABA) A receptor, gamma 3 protein-coding GABRG3 gamma-aminobutyric acid (GABA) A receptor, gamma 3 O GABA(A) receptor subunit gamma-3|GABA(G) receptor, gamma 3|gamma-aminobutyric acid receptor subunit gamma-3 20121230 -9606 2568 GABRP - - HGNC:4089|MIM:602729|Ensembl:ENSG00000094755|HPRD:04105|Vega:OTTHUMG00000130443 5 5q35.1 gamma-aminobutyric acid (GABA) A receptor, pi protein-coding GABRP gamma-aminobutyric acid (GABA) A receptor, pi O GABA(A) receptor subunit pi|GABA(A) receptor, pi|gamma-aminobutyric acid receptor subunit pi 20121230 -9606 2569 GABRR1 RP11-63L7.1 - HGNC:4090|MIM:137161|Ensembl:ENSG00000146276|HPRD:15921|Vega:OTTHUMG00000015195 6 6q15 gamma-aminobutyric acid (GABA) A receptor, rho 1 protein-coding GABRR1 gamma-aminobutyric acid (GABA) A receptor, rho 1 O GABA(A) receptor subunit rho-1|GABA(A) receptor, rho 1|GABA(C) receptor|bA135P14.1 (gamma-aminobutyric acid (GABA) receptor, rho 1)|gamma-aminobutyric acid (GABA) A receptor, rho-1|gamma-aminobutyric acid (GABA) receptor, rho 1|gamma-aminobutyric acid receptor subunit rho-1 20121230 -9606 2570 GABRR2 RP1-131H7.1 - HGNC:4091|MIM:137162|Ensembl:ENSG00000111886|HPRD:15922|Vega:OTTHUMG00000015198 6 6q15 gamma-aminobutyric acid (GABA) A receptor, rho 2 protein-coding GABRR2 gamma-aminobutyric acid (GABA) A receptor, rho 2 O GABA(A) receptor subunit rho-2|GABA(A) receptor, rho 2|GABA(C) receptor|GABA-C receptor, rho-2 subunit|gamma-aminobutyric acid (GABA) receptor, rho 2|gamma-aminobutyric acid receptor subunit rho-2 20121230 -9606 2571 GAD1 - CPSQ1|GAD|SCP HGNC:4092|MIM:605363|Ensembl:ENSG00000128683|HPRD:12011|Vega:OTTHUMG00000044175 2 2q31 glutamate decarboxylase 1 (brain, 67kDa) protein-coding GAD1 glutamate decarboxylase 1 (brain, 67kDa) O 67 kDa glutamic acid decarboxylase|GAD-67|glutamate decarboxylase 1|glutamate decarboxylase 67 kDa isoform 20121230 -9606 2572 GAD2 RP11-420F12.2 GAD65 HGNC:4093|MIM:138275|Ensembl:ENSG00000136750|HPRD:11817|Vega:OTTHUMG00000017836 10 10p11.23 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) protein-coding GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) O 65 kDa glutamic acid decarboxylase|GAD-65|Glutamate decarboxylase-2 (pancreas)|glutamate decarboxylase 2|glutamate decarboxylase 65 kDa isoform 20121230 -9606 2574 GAGE2C - CT4.2|GAGE-2|GAGE-2C|GAGE2 HGNC:31958|MIM:300595|Ensembl:ENSG00000236249|HPRD:05029|Vega:OTTHUMG00000067392 X Xp11.23 G antigen 2C protein-coding GAGE2C G antigen 2C O G antigen 2|G antigen 2B/2C|cancer/testis antigen 4.2 20121230 -9606 2575 GAGE3 - CT4.3 HGNC:4100|MIM:300596 X Xp11.4-p11.2 G antigen 3 protein-coding GAGE3 G antigen 3 O GAGE-3|cancer/testis antigen 4.3|cancer/testis antigen family 4, member 3 20110814 -9606 2576 GAGE4 - CT4.4 HGNC:4101|MIM:300597|HPRD:05031 X Xp11.4-p11.2 G antigen 4 protein-coding GAGE4 G antigen 4 O GAGE-4|cancer/testis antigen 4.4|cancer/testis antigen family 4, member 4 20121117 -9606 2577 GAGE5 - CT4.5 HGNC:4102|MIM:300598|HPRD:05032 X Xp11.4-p11.2 G antigen 5 protein-coding GAGE5 G antigen 5 O GAGE-5|cancer/testis antigen 4.5|cancer/testis antigen family 4, member 5 20121209 -9606 2578 GAGE6 - CT4.6 HGNC:4103|MIM:300599|HPRD:05033 X Xp11.4-p11.2 G antigen 6 protein-coding GAGE6 G antigen 6 O GAGE-6|cancer/testis antigen 4.6|cancer/testis antigen family 4, member 6 20120508 -9606 2579 GAGE7 - AL4|CT4.7|GAGE-7 HGNC:4104|MIM:300601|HPRD:04993 X Xp11.4-p11.2 G antigen 7 protein-coding GAGE7 G antigen 7 O G antigen 12G|cancer/testis antigen 4.7|cancer/testis antigen family 4, member 7 20121117 -9606 2580 GAK - DNAJ26|DNAJC26 HGNC:4113|MIM:602052|Ensembl:ENSG00000178950|HPRD:03631|Vega:OTTHUMG00000088301 4 4p16 cyclin G associated kinase protein-coding GAK cyclin G associated kinase O auxilin-2|cyclin-G-associated kinase 20121230 -9606 2581 GALC - - HGNC:4115|MIM:606890|Ensembl:ENSG00000054983|HPRD:06057|Vega:OTTHUMG00000028646 14 14q31 galactosylceramidase protein-coding GALC galactosylceramidase O GALCERase|galactocerebrosidase|galactocerebroside beta-galactosidase|galactosylceramide beta-galactosidase|galactosylceraminidase 20121230 -9606 2582 GALE RP5-886K2.6 SDR1E1 HGNC:4116|MIM:606953|Ensembl:ENSG00000117308|HPRD:06092|Vega:OTTHUMG00000002958 1 1p36-p35 UDP-galactose-4-epimerase protein-coding GALE UDP-galactose-4-epimerase O UDP galactose-4'-epimerase|UDP-galactose 4-epimerase|UDP-glucose 4-epimerase|galactose-4-epimerase, UDP-|galactowaldenase|short chain dehydrogenase/reductase family 1E, member 1 20121230 -9606 2583 B4GALNT1 - GALGT|GALNACT HGNC:4117|MIM:601873|Ensembl:ENSG00000135454|HPRD:03525|Vega:OTTHUMG00000170190 12 12q13.3 beta-1,4-N-acetyl-galactosaminyl transferase 1 protein-coding B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 O (N-acetylneuraminyl)-galactosylglucosylceramide|GD2 synthase, GM2 synthase|GM2/GD2 synthase|GalNAc-T|UDP-Gal:betaGlcNAc beta-1,4-N-acetylgalactosaminyltransferase transferase 1|UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T)|beta-1,4 N-acetylgalactosaminyltransferase 1|beta1,4GalNAc-T|beta1-4GalNAc-T 20121230 -9606 2584 GALK1 - GALK|GK1 HGNC:4118|MIM:604313|Ensembl:ENSG00000108479|HPRD:05057|Vega:OTTHUMG00000179832 17 17q24 galactokinase 1 protein-coding GALK1 galactokinase 1 O galactokinase|galactose kinase 20121230 -9606 2585 GALK2 - GK2 HGNC:4119|MIM:137028|Ensembl:ENSG00000156958|HPRD:00657|Vega:OTTHUMG00000172325 15 15q21.1-q21.2 galactokinase 2 protein-coding GALK2 galactokinase 2 O N-acetylgalactosamine kinase|galNAc kinase 20121230 -9606 2587 GALR1 - GALNR|GALNR1 HGNC:4132|MIM:600377|Ensembl:ENSG00000166573|HPRD:02657|Vega:OTTHUMG00000132875 18 18q23 galanin receptor 1 protein-coding GALR1 galanin receptor 1 O GAL1-R|GALR-1|galanin receptor type 1 20121230 -9606 2588 GALNS - GALNAC6S|GAS|MPS4A HGNC:4122|MIM:612222|Ensembl:ENSG00000141012|HPRD:08357|Vega:OTTHUMG00000137862 16 16q24.3 galactosamine (N-acetyl)-6-sulfate sulfatase protein-coding GALNS galactosamine (N-acetyl)-6-sulfate sulfatase O N-acetylgalactosamine-6-sulfatase|N-acetylgalactosamine-6-sulfate sulfatase|chondroitinase|chondroitinsulfatase|galNAc6S sulfatase|galactose-6-sulfate sulfatase 20121230 -9606 2589 GALNT1 - GALNAC-T1 HGNC:4123|MIM:602273|Ensembl:ENSG00000141429|HPRD:03781|Vega:OTTHUMG00000132567 18 18q12.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) protein-coding GALNT1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) O GalNAc transferase 1|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1|polypeptide GalNAc transferase 1|polypeptide N-acetylgalactosaminyltransferase 1|pp-GaNTase 1|protein-UDP acetylgalactosaminyltransferase 1 20121230 -9606 2590 GALNT2 RP5-956O18.1 GalNAc-T2 HGNC:4124|MIM:602274|Ensembl:ENSG00000143641|HPRD:03782|Vega:OTTHUMG00000037771 1 1q41-q42 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) protein-coding GALNT2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) O UDP-GalNAc transferase 2|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2|polypeptide GalNAc transferase 2|polypeptide N-acetylgalactosaminyltransferase 2|pp-GaNTase 2|protein-UDP acetylgalactosaminyltransferase 2 20121230 -9606 2591 GALNT3 - GalNAc-T3|HFTC|HHS HGNC:4125|MIM:601756|Ensembl:ENSG00000115339|HPRD:03453|Vega:OTTHUMG00000132157 2 2q24-q31 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) protein-coding GALNT3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) O GalNAc transferase 3|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3|polypeptide GalNAc transferase 3|polypeptide GalNAc-transferase T3|polypeptide N-acetylgalactosaminyltransferase 3|pp-GaNTase 3|protein-UDP acetylgalactosaminyltransferase 3 20121230 -9606 2592 GALT hCG_2040046 - HGNC:4135|MIM:606999|Ensembl:ENSG00000213930|HPRD:06106|Vega:OTTHUMG00000019836 9 9p13 galactose-1-phosphate uridylyltransferase protein-coding GALT galactose-1-phosphate uridylyltransferase O UDP-glucose--hexose-1-phosphate uridylyltransferase|gal-1-P uridylyltransferase|galactose-1-phosphate uridyl transferase 20121230 -9606 2593 GAMT - PIG2|TP53I2 HGNC:4136|MIM:601240|Ensembl:ENSG00000130005|HPRD:03142|Vega:OTTHUMG00000180095 19 19p13.3 guanidinoacetate N-methyltransferase protein-coding GAMT guanidinoacetate N-methyltransferase O - 20121230 -9606 2595 GANC - - HGNC:4139|MIM:104180|Ensembl:ENSG00000214013|HPRD:00077|Vega:OTTHUMG00000130487 15 15q15.2 glucosidase, alpha; neutral C protein-coding GANC glucosidase, alpha; neutral C O neutral alpha-glucosidase C 20121230 -9606 2596 GAP43 - B-50|PP46 HGNC:4140|MIM:162060|Ensembl:ENSG00000172020|HPRD:01198|Vega:OTTHUMG00000133758 3 3q13.1-q13.2 growth associated protein 43 protein-coding GAP43 growth associated protein 43 O axonal membrane protein GAP-43|calmodulin-binding protein P-57|growth-associated protein 43|nerve growth-related peptide GAP43|neural phosphoprotein B-50|neuromodulin|neuron growth-associated protein 43|protein F1 20121230 -9606 2597 GAPDH CDABP0047 G3PD|GAPD HGNC:4141|MIM:138400|Ensembl:ENSG00000111640|HPRD:00713|Vega:OTTHUMG00000137379 12 12p13 glyceraldehyde-3-phosphate dehydrogenase protein-coding GAPDH glyceraldehyde-3-phosphate dehydrogenase O aging-associated gene 9 protein|peptidyl-cysteine S-nitrosylase GAPDH 20121230 -9606 2601 GAPDHP60 - GAPDHL4|GAPDL4 HGNC:4153 4 4q22.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 60 pseudo GAPDHP60 glyceraldehyde-3-phosphate dehydrogenase pseudogene 60 O - 20121230 -9606 2609 GAPDHP67 RP11-274K13.4 GAPDHL12|GAPDL12 HGNC:4145 X Xq26.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 67 pseudo GAPDHP67 glyceraldehyde 3 phosphate dehydrogenase pseudogene 67 O - 20121230 -9606 2611 GAPDHP69 - GAPDHL14|GAPDL14 HGNC:4147 13 13q12 glyceraldehyde 3 phosphate dehydrogenase pseudogene 69 pseudo GAPDHP69 glyceraldehyde 3 phosphate dehydrogenase pseudogene 69 O - 20121230 -9606 2613 GAPDHP71 - GAPDHL16|GAPDL16 HGNC:4149 5 5q35.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 pseudo GAPDHP71 glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 O - 20121230 -9606 2615 LRRC32 - D11S833E|GARP HGNC:4161|MIM:137207|Ensembl:ENSG00000137507|HPRD:00667|Vega:OTTHUMG00000133687 11 11q13.5-q14 leucine rich repeat containing 32 protein-coding LRRC32 leucine rich repeat containing 32 O garpin|glycoprotein A repetitions predominant|leucine-rich repeat-containing protein 32 20121230 -9606 2616 GAPDHP1 - GAPDHL2|GAPDL2|GAPDP1 HGNC:4159 X Xp11.4 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 pseudo GAPDHP1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 O - 20121230 -9606 2617 GARS - CMT2D|DSMAV|GlyRS|HMN5|SMAD1 HGNC:4162|MIM:600287|Ensembl:ENSG00000106105|HPRD:02617|Vega:OTTHUMG00000152769 7 7p15 glycyl-tRNA synthetase protein-coding GARS glycyl-tRNA synthetase O AP-4-A synthetase|Charcot-Marie-Tooth neuropathy 2D|Charcot-Marie-Tooth neuropathy, neuronal type, D|diadenosine tetraphosphate synthetase|glycine tRNA ligase|glycine--tRNA ligase 20121230 -9606 2618 GART - AIRS|GARS|GARTF|PAIS|PGFT|PRGS HGNC:4163|MIM:138440|Ensembl:ENSG00000159131|HPRD:00716|Vega:OTTHUMG00000065628 21 21q22.11 phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase O trifunctional purine biosynthetic protein adenosine-3 20121230 -9606 2619 GAS1 - - HGNC:4165|MIM:139185|Ensembl:ENSG00000180447|HPRD:00747|Vega:OTTHUMG00000020141 9 9q21.3-q22 growth arrest-specific 1 protein-coding GAS1 growth arrest-specific 1 O GAS-1|Growth arrest-specific gene-1|growth arrest-specific protein 1 20121230 -9606 2620 GAS2 - - HGNC:4167|MIM:602835|Ensembl:ENSG00000148935|HPRD:04158|Vega:OTTHUMG00000166071 11 11p14.3 growth arrest-specific 2 protein-coding GAS2 growth arrest-specific 2 O GAS-2|growth arrest-specific protein 2 20121230 -9606 2621 GAS6 - AXLLG|AXSF HGNC:4168|MIM:600441|Ensembl:ENSG00000183087|HPRD:02705|Vega:OTTHUMG00000017395 13 13q34 growth arrest-specific 6 protein-coding GAS6 growth arrest-specific 6 O AXL receptor tyrosine kinase ligand|AXL stimulatory factor|growth arrest-specific protein 6 20121230 -9606 2622 GAS8 - GAS11 HGNC:4166|MIM:605178|Ensembl:ENSG00000141013|HPRD:05533|Vega:OTTHUMG00000138988 16 16q24.3 growth arrest-specific 8 protein-coding GAS8 growth arrest-specific 8 O GAS-11|GAS-8|growth arrest specific 11|growth arrest-specific 11|growth arrest-specific protein 11|growth arrest-specific protein 8 20121230 -9606 2623 GATA1 - ERYF1|GATA-1|GF-1|GF1|NFE1|XLANP|XLTDA|XLTT HGNC:4170|MIM:305371|Ensembl:ENSG00000102145|HPRD:02372|Vega:OTTHUMG00000021504 X Xp11.23 GATA binding protein 1 (globin transcription factor 1) protein-coding GATA1 GATA binding protein 1 (globin transcription factor 1) O GATA-binding factor 1|NF-E1 DNA-binding protein|erythroid transcription factor|erythroid transcription factor 1|globin transcription factor 1|transcription factor GATA1 20121230 -9606 2624 GATA2 - DCML|MONOMAC|NFE1B HGNC:4171|MIM:137295|Ensembl:ENSG00000179348|HPRD:00673|Vega:OTTHUMG00000159689 3 3q21.3 GATA binding protein 2 protein-coding GATA2 GATA binding protein 2 O endothelial transcription factor GATA-2 20121230 -9606 2625 GATA3 - HDR|HDRS HGNC:4172|MIM:131320|Ensembl:ENSG00000107485|HPRD:00572|Vega:OTTHUMG00000017640 10 10p15 GATA binding protein 3 protein-coding GATA3 GATA binding protein 3 O GATA-binding factor 3|trans-acting T-cell-specific transcription factor GATA-3 20121230 -9606 2626 GATA4 - ASD2|VSD1 HGNC:4173|MIM:600576|Ensembl:ENSG00000136574|HPRD:08994|Vega:OTTHUMG00000090800 8 8p23.1-p22 GATA binding protein 4 protein-coding GATA4 GATA binding protein 4 O GATA-binding factor 4|transcription factor GATA-4 20121230 -9606 2627 GATA6 - - HGNC:4174|MIM:601656|Ensembl:ENSG00000141448|HPRD:09043|Vega:OTTHUMG00000131767 18 18q11.1-q11.2 GATA binding protein 6 protein-coding GATA6 GATA binding protein 6 O GATA-binding factor 6|transcription factor GATA-6 20121230 -9606 2628 GATM - AGAT|AT HGNC:4175|MIM:602360|Ensembl:ENSG00000171766|HPRD:03838|Vega:OTTHUMG00000131427 15 15q21.1 glycine amidinotransferase (L-arginine:glycine amidinotransferase) protein-coding GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase) O L-arginine:glycine amidinotransferase|glycine amidinotransferase, mitochondrial|transamidinase 20121230 -9606 2629 GBA - GBA1|GCB|GLUC HGNC:4177|MIM:606463|Ensembl:ENSG00000177628|HPRD:06973|Vega:OTTHUMG00000035841 1 1q21 glucosidase, beta, acid protein-coding GBA glucosidase, beta, acid O D-glucosyl-N-acylsphingosine glucohydrolase|acid beta-glucosidase|alglucerase|beta-glucocerebrosidase|glucosylceramidase|imiglucerase|lysosomal glucocerebrosidase 20121230 -9606 2630 GBAP1 RP11-263K19.8 GBAP HGNC:4178 1 1q21 glucosidase, beta, acid pseudogene 1 pseudo GBAP1 glucosidase, beta, acid pseudogene 1 O - 20121230 -9606 2631 GBAS - NIPSNAP2 HGNC:4179|MIM:603004|Ensembl:ENSG00000146729|HPRD:04302|Vega:OTTHUMG00000022932 7 7p12 glioblastoma amplified sequence protein-coding GBAS glioblastoma amplified sequence O 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like 2|protein NipSnap homolog 2 20121230 -9606 2632 GBE1 - APBD|GBE|GSD4 HGNC:4180|MIM:607839|Ensembl:ENSG00000114480|HPRD:01985|Vega:OTTHUMG00000158978 3 3p12.3 glucan (1,4-alpha-), branching enzyme 1 protein-coding GBE1 glucan (1,4-alpha-), branching enzyme 1 O 1,4-alpha-glucan-branching enzyme|amylo-(1,4 to 1,6) transglucosidase|amylo-(1,4 to 1,6) transglycosylase|brancher enzyme|glycogen branching enzyme|glycogen-branching enzyme 20121230 -9606 2633 GBP1 - - HGNC:4182|MIM:600411|Ensembl:ENSG00000117228|HPRD:02681|Vega:OTTHUMG00000010614 1 1p22.2 guanylate binding protein 1, interferon-inducible protein-coding GBP1 guanylate binding protein 1, interferon-inducible O GBP-1|GTP-binding protein 1|guanine nucleotide-binding protein 1|guanylate binding protein 1, interferon-inducible, 67kDa|huGBP-1|interferon-induced guanylate-binding protein 1 20121230 -9606 2634 GBP2 - - HGNC:4183|MIM:600412|Ensembl:ENSG00000162645|HPRD:02682|Vega:OTTHUMG00000010662 1 1p22.2 guanylate binding protein 2, interferon-inducible protein-coding GBP2 guanylate binding protein 2, interferon-inducible O GBP-2|GTP-binding protein 2|guanine nucleotide-binding protein 2|huGBP-2|interferon-induced guanylate-binding protein 2 20121230 -9606 2635 GBP3 RP4-531M19.1 - HGNC:4184|MIM:600413|Ensembl:ENSG00000117226|HPRD:02683|Vega:OTTHUMG00000010616 1 1p22.2 guanylate binding protein 3 protein-coding GBP3 guanylate binding protein 3 O GBP-3|GTP-binding protein 3|guanine nucleotide-binding protein 3|guanylate-binding protein 3|guanylate-binding protein 3 delta C 20121230 -9606 2636 GBX1 - - HGNC:4185|MIM:603354|Ensembl:ENSG00000164900|Vega:OTTHUMG00000158751 7 7q36.1 gastrulation brain homeobox 1 protein-coding GBX1 gastrulation brain homeobox 1 O gastrulation and brain-specific homeobox protein 1|gastrulation brain homeo box 1|homeobox protein GBX-1 20121230 -9606 2637 GBX2 - - HGNC:4186|MIM:601135|Ensembl:ENSG00000168505|HPRD:03087|Vega:OTTHUMG00000133294 2 2q37.2 gastrulation brain homeobox 2 protein-coding GBX2 gastrulation brain homeobox 2 O gastrulation and brain-specific homeobox protein 2|gastrulation brain homeo box 2|homeobox protein GBX-2 20121230 -9606 2638 GC - DBP|DBP/GC|GRD3|VDBG|VDBP HGNC:4187|MIM:139200|Ensembl:ENSG00000145321|HPRD:00749|Vega:OTTHUMG00000129915 4 4q12-q13 group-specific component (vitamin D binding protein) protein-coding GC group-specific component (vitamin D binding protein) O VDB|gc-globulin|vitamin D-binding alpha-globulin|vitamin D-binding protein 20121230 -9606 2639 GCDH - ACAD5|GCD HGNC:4189|MIM:608801|Ensembl:ENSG00000105607|HPRD:01977|Vega:OTTHUMG00000180561 19 19p13.2 glutaryl-CoA dehydrogenase protein-coding GCDH glutaryl-CoA dehydrogenase O glutaryl-CoA dehydrogenase, mitochondrial|glutaryl-Coenzyme A dehydrogenase 20121230 -9606 2641 GCG - GLP1|GLP2|GRPP HGNC:4191|MIM:138030|Ensembl:ENSG00000115263|HPRD:00676|Vega:OTTHUMG00000153892 2 2q36-q37 glucagon protein-coding GCG glucagon O glicentin-related polypeptide|glucagon-like peptide 1|glucagon-like peptide 2 20121230 -9606 2642 GCGR - GGR HGNC:4192|MIM:138033|Ensembl:ENSG00000215644|HPRD:00678|Vega:OTTHUMG00000177914 17 17q25 glucagon receptor protein-coding GCGR glucagon receptor O GL-R 20121230 -9606 2643 GCH1 - DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B HGNC:4193|MIM:600225|Ensembl:ENSG00000131979|HPRD:02573|Vega:OTTHUMG00000029754 14 14q22.1-q22.2 GTP cyclohydrolase 1 protein-coding GCH1 GTP cyclohydrolase 1 O GTP cyclohydrolase I|GTP-CH-I|dystonia 14|guanosine 5'-triphosphate cyclohydrolase I 20121230 -9606 2644 GCHFR - GFRP|HsT16933|P35 HGNC:4194|MIM:602437|Ensembl:ENSG00000137880|HPRD:03895|Vega:OTTHUMG00000130069 15 15q15 GTP cyclohydrolase I feedback regulator protein-coding GCHFR GTP cyclohydrolase I feedback regulator O GTP cyclohydrolase 1 feedback regulatory protein|GTP cyclohydrolase I feedback regulatory protein 20121230 -9606 2645 GCK - FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 HGNC:4195|MIM:138079|Ensembl:ENSG00000106633|HPRD:00680|Vega:OTTHUMG00000022903 7 7p15.3-p15.1 glucokinase (hexokinase 4) protein-coding GCK glucokinase (hexokinase 4) O ATP:D-hexose 6-phosphotransferase|HK IV|glucokinase|hexokinase D, pancreatic isozyme|hexokinase type IV|hexokinase-4|hexokinase-D 20121230 -9606 2646 GCKR - FGQTL5|GKRP HGNC:4196|MIM:600842|Ensembl:ENSG00000084734|HPRD:02909|Vega:OTTHUMG00000128426 2 2p23 glucokinase (hexokinase 4) regulator protein-coding GCKR glucokinase (hexokinase 4) regulator O glucokinase regulatory protein 20121230 -9606 2647 BLOC1S1 - BLOS1|GCN5L1|MICoA|RT14 HGNC:4200|MIM:601444|Ensembl:ENSG00000135441|Ensembl:ENSG00000258311|HPRD:03263|Vega:OTTHUMG00000169962|Vega:OTTHUMG00000170130 12 12q13-q14 biogenesis of lysosomal organelles complex-1, subunit 1 protein-coding BLOC1S1 biogenesis of lysosomal organelles complex-1, subunit 1 O BLOC subunit 1|BLOC-1 subunit 1|GCN5 (general control of amino-acid synthesis, yeast, homolog)-like 1|GCN5 general control of amino-acid synthesis 5-like 1|GCN5-like protein 1|MTA1-interacting coactivator|biogenesis of lysosome-related organelles complex 1 subunit 1 20121230 -9606 2648 KAT2A - GCN5|GCN5L2|PCAF-b|hGCN5 HGNC:4201|MIM:602301|Ensembl:ENSG00000108773|HPRD:03807|Vega:OTTHUMG00000133504 17 17q21 K(lysine) acetyltransferase 2A protein-coding KAT2A K(lysine) acetyltransferase 2A O GCN5 (general control of amino-acid synthesis, yeast, homolog)-like 2|General control of amino acid synthesis, yeast, homolog-like 2|STAF97|general control of amino acid synthesis protein 5-like 2|histone acetyltransferase GCN5|histone acetyltransferase KAT2A|hsGCN5|lysine acetyltransferase 2A 20121230 -9606 2649 NR6A1 - GCNF|GCNF1|NR61|RTR HGNC:7985|MIM:602778|Ensembl:ENSG00000148200|HPRD:04147|Vega:OTTHUMG00000020661 9 9q33.3 nuclear receptor subfamily 6, group A, member 1 protein-coding NR6A1 nuclear receptor subfamily 6, group A, member 1 O germ cell nuclear factor variant 1|hGCNF|hRTR|nuclear receptor subfamily 6 group A member 1|retinoic acid receptor-related testis-associated receptor|retinoid receptor-related testis-specific receptor 20121230 -9606 2650 GCNT1 RP11-214N16.1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 HGNC:4203|MIM:600391|Ensembl:ENSG00000187210|HPRD:02669|Vega:OTTHUMG00000020044 9 9q13 glucosaminyl (N-acetyl) transferase 1, core 2 protein-coding GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 O beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N--acetylglucosaminyltransferase|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase|beta-1,6-N-acetylglucosaminyltransferase|core 2 GnT|core 2 beta-1,6-N-acetylglucosaminyltransferase I|core 2 beta1,6 N-acetylglucosaminyltransferase-I|core 2 branching enzyme|core 2-branching enzyme|core2-GlcNAc-transferase|glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) 20121230 -9606 2651 GCNT2 RP11-421M1.1 CCAT|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 HGNC:4204|MIM:600429|Ensembl:ENSG00000111846|HPRD:02695|Vega:OTTHUMG00000014244 6 6p24.2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) protein-coding GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) O I beta-1,6-N-acetylglucosaminyltransferase|Ii blood group|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase|beta-1,6-N-acetylglucosaminyltransferase 2 20121230 -9606 2652 OPN1MW - CBBM|CBD|COD5|GCP|GOP|OPN1MW1 HGNC:4206|MIM:300821|Ensembl:ENSG00000147380|HPRD:02365|Vega:OTTHUMG00000022652 X Xq28 opsin 1 (cone pigments), medium-wave-sensitive protein-coding OPN1MW opsin 1 (cone pigments), medium-wave-sensitive O cone dystrophy 5 (X-linked)|green cone photoreceptor pigment|green cone pigment|green-sensitive opsin|medium-wave-sensitive opsin 1|photopigment apoprotein 20121230 -9606 2653 GCSH - GCE|NKH HGNC:4208|MIM:238330|Ensembl:ENSG00000140905|HPRD:01998|Vega:OTTHUMG00000137626 16 16q23.2 glycine cleavage system protein H (aminomethyl carrier) protein-coding GCSH glycine cleavage system protein H (aminomethyl carrier) O glycine cleavage system H protein, mitochondrial|lipoic acid-containing protein|mitochondrial glycine cleavage system H-protein 20121230 -9606 2656 GCY - STA|TS|TSY HGNC:4211|MIM:475000 Y Yq11 growth control, Y chromosome influenced unknown GCY growth control, Y chromosome influenced O - 20110215 -9606 2657 GDF1 - DORV|DTGA3 HGNC:4214|MIM:602880|Ensembl:ENSG00000130283|HPRD:04194 19 19p12 growth differentiation factor 1 protein-coding GDF1 growth differentiation factor 1 O GDF-1|embryonic growth/differentiation factor 1 20121230 -9606 2658 GDF2 - BMP-9|BMP9 HGNC:4217|MIM:605120|Ensembl:ENSG00000128802|HPRD:05492|Vega:OTTHUMG00000018149 10 10q11.22 growth differentiation factor 2 protein-coding GDF2 growth differentiation factor 2 O GDF-2|bone morphogenetic protein 9|growth/differentiation factor 2 20121230 -9606 2660 MSTN - GDF8|MSLHP HGNC:4223|MIM:601788|Ensembl:ENSG00000138379|HPRD:03474|Vega:OTTHUMG00000132663 2 2q32.2 myostatin protein-coding MSTN myostatin O GDF-8|growth differentiation factor 8|growth/differentiation factor 8 20121230 -9606 2661 GDF9 - - HGNC:4224|MIM:601918|Ensembl:ENSG00000164404|HPRD:03560 5 5q31.1 growth differentiation factor 9 protein-coding GDF9 growth differentiation factor 9 O GDF-9|growth/differentiation factor 9 20121230 -9606 2662 GDF10 RP11-463P17.5 BMP-3b|BMP3B HGNC:4215|MIM:601361|Ensembl:ENSG00000107623|HPRD:03218|Vega:OTTHUMG00000018144 10 10q11.22 growth differentiation factor 10 protein-coding GDF10 growth differentiation factor 10 O BIP|GDF-10|bone morphogenetic protein 3B|bone-inducing protein 20121230 -9606 2664 GDI1 XX-FW81657B9.1 1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4 HGNC:4226|MIM:300104|Ensembl:ENSG00000203879|HPRD:02114|Vega:OTTHUMG00000033293 X Xq28 GDP dissociation inhibitor 1 protein-coding GDI1 GDP dissociation inhibitor 1 O GDI-1|guanosine diphosphate dissociation inhibitor 1|mental retardation, X-linked 48|oligophrenin-2|protein XAP-4|rab GDI alpha|rab GDP dissociation inhibitor alpha|rab GDP-dissociation inhibitor, alpha 20121230 -9606 2665 GDI2 RP11-318E3.2 RABGDIB HGNC:4227|MIM:600767|Ensembl:ENSG00000057608|HPRD:02863|Vega:OTTHUMG00000017607 10 10p15 GDP dissociation inhibitor 2 protein-coding GDI2 GDP dissociation inhibitor 2 O GDI-2|guanosine diphosphate dissociation inhibitor 2|rab GDI beta|rab GDP dissociation inhibitor beta|rab GDP-dissociation inhibitor, beta 20121230 -9606 2667 GDI2P1 - GDI2P HGNC:4228 7 7p12.3 GDP dissociation inhibitor 2 pseudogene 1 pseudo GDI2P1 GDP dissociation inhibitor 2 pseudogene 1 O - 20121230 -9606 2668 GDNF - ATF1|ATF2|HFB1-GDNF|HSCR3 HGNC:4232|MIM:600837|Ensembl:ENSG00000168621|HPRD:02906|Vega:OTTHUMG00000090809 5 5p13.1-p12 glial cell derived neurotrophic factor protein-coding GDNF glial cell derived neurotrophic factor O ATF|astrocyte-derived trophic factor|glial cell line-derived neurotrophic factor 20121230 -9606 2669 GEM - KIR HGNC:4234|MIM:600164|Ensembl:ENSG00000164949|HPRD:11553|Vega:OTTHUMG00000164392 8 8q13-q21 GTP binding protein overexpressed in skeletal muscle protein-coding GEM GTP binding protein overexpressed in skeletal muscle O GTP-binding mitogen-induced T-cell protein|GTP-binding protein GEM|GTP-binding protein overexpressed in skeletal muscle|RAS-like protein KIR|kinase-inducible Ras-like protein 20121230 -9606 2670 GFAP - - HGNC:4235|MIM:137780|Ensembl:ENSG00000131095|HPRD:00675|Vega:OTTHUMG00000179866 17 17q21 glial fibrillary acidic protein protein-coding GFAP glial fibrillary acidic protein O - 20121230 -9606 2671 GFER - ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS HGNC:4236|MIM:600924|Ensembl:ENSG00000127554|HPRD:02954|Vega:OTTHUMG00000176896 16 16p13.3-p13.12 growth factor, augmenter of liver regeneration protein-coding GFER growth factor, augmenter of liver regeneration O ERV1 homolog|FAD-linked sulfhydryl oxidase ALR|erv1-like growth factor|hepatic regenerative stimulation substance|hepatopoietin protein 20121230 -9606 2672 GFI1 - GFI-1|GFI1A|SCN2|ZNF163 HGNC:4237|MIM:600871|Ensembl:ENSG00000162676|HPRD:07527|Vega:OTTHUMG00000010897 1 1p22 growth factor independent 1 transcription repressor protein-coding GFI1 growth factor independent 1 transcription repressor O growth factor independence-1|growth factor independent protein 1|zinc finger protein 163|zinc finger protein Gfi-1 20121230 -9606 2673 GFPT1 - CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG HGNC:4241|MIM:138292|Ensembl:ENSG00000198380|HPRD:00702|Vega:OTTHUMG00000152666 2 2p13 glutamine--fructose-6-phosphate transaminase 1 protein-coding GFPT1 glutamine--fructose-6-phosphate transaminase 1 O D-fructose-6-phosphate amidotransferase 1|glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1|glutamine:fructose 6 phosphate amidotransferase 1|hexosephosphate aminotransferase 1 20121230 -9606 2674 GFRA1 - GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 HGNC:4243|MIM:601496|Ensembl:ENSG00000151892|HPRD:03291|Vega:OTTHUMG00000019097 10 10q26.11 GDNF family receptor alpha 1 protein-coding GFRA1 GDNF family receptor alpha 1 O GDNF family receptor alpha-1|GDNF receptor alpha-1|GDNFR-alpha-1|GPI-linked anchor protein|Glial cell line-derived neurotrophic factor receptor alpha|PI-linked cell-surface accessory protein|RET ligand 1|TGF-beta related neurotrophic factor receptor 1|TGF-beta-related neurotrophic factor receptor 1 20121230 -9606 2675 GFRA2 - GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 HGNC:4244|MIM:601956|Ensembl:ENSG00000168546|HPRD:11801|Vega:OTTHUMG00000163897 8 8p21.3 GDNF family receptor alpha 2 protein-coding GFRA2 GDNF family receptor alpha 2 O GDNF family receptor alpha-2|GDNF receptor beta|GDNFR-alpha-2|GDNFR-beta|GFR-alpha 2|NTNR-alpha|PI-linked cell-surface accessory protein|RET ligand 2|TGF-beta-related neurotrophic factor receptor 2|TRN receptor, GPI-anchored|glial cell line derived neurotrophic factor receptor, beta|neurturin receptor alpha 20121230 -9606 2676 GFRA3 UNQ339/PRO538/PRO3664 - HGNC:4245|MIM:605710|Ensembl:ENSG00000146013|HPRD:10420|Vega:OTTHUMG00000129200 5 5q31.1-q31.3 GDNF family receptor alpha 3 protein-coding GFRA3 GDNF family receptor alpha 3 O GDNF family receptor alpha-3|GDNF receptor alpha-3|GDNFR-alpha-3|GFR-alpha-3|GPI-linked receptor|glial cell line-derived neurotrophic factor receptor alpha-3 20121230 -9606 2677 GGCX - VKCFD1 HGNC:4247|MIM:137167|Ensembl:ENSG00000115486|HPRD:00665|Vega:OTTHUMG00000130173 2 2p12 gamma-glutamyl carboxylase protein-coding GGCX gamma-glutamyl carboxylase O peptidyl-glutamate 4-carboxylase|vitamin K-dependent gamma-carboxylase 20121230 -9606 2678 GGT1 - CD224|D22S672|D22S732|GGT|GGT 1|GTG HGNC:4250|MIM:612346|Ensembl:ENSG00000100031|HPRD:01980|Vega:OTTHUMG00000030859 22 22q11.23 gamma-glutamyltransferase 1 protein-coding GGT1 gamma-glutamyltransferase 1 O gamma-glutamyl transpeptidase|gamma-glutamyltranspeptidase 1|glutamyl transpeptidase|glutathione hydrolase 1|leukotriene-C4 hydrolase 20121230 -9606 2679 GGT3P - GGT3 HGNC:4252 22 22q11.21 gamma-glutamyltransferase 3 pseudogene pseudo GGT3P gamma-glutamyltransferase 3 pseudogene O - 20121230 -9606 2681 GGTA1P - GGTA|GGTA1|GLYT2|a1/3GTP HGNC:4253|MIM:104175 9 9q33.2 glycoprotein, alpha-galactosyltransferase 1 pseudogene pseudo GGTA1P glycoprotein, alpha-galactosyltransferase 1 pseudogene O - 20121230 -9606 2683 B4GALT1 - B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 HGNC:924|MIM:137060|Ensembl:ENSG00000086062|HPRD:00659|Vega:OTTHUMG00000019764 9 9p13 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 protein-coding B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 O UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 1|UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 1|beta-1,4-GalTase 1|beta-1,4-galactosyltransferase 1|glycoprotein-4-beta-galactosyltransferase 2|lactose synthase 20121230 -9606 2686 GGT7 RP1-18C9.2 D20S101|GGT4|GGTL3|GGTL5|dJ18C9.2 HGNC:4259|MIM:612342|Ensembl:ENSG00000131067|HPRD:07488|Vega:OTTHUMG00000032314 20 20q11.22 gamma-glutamyltransferase 7 protein-coding GGT7 gamma-glutamyltransferase 7 O GGT 7|gamma-glutamyltransferase 4|gamma-glutamyltransferase-like 3|gamma-glutamyltransferase-like 5|gamma-glutamyltranspeptidase 7|gamma-glutamyltranspeptidase-like 3|glutathione hydrolase 7 20121230 -9606 2687 GGT5 - GGT-REL|GGTLA1 HGNC:4260|MIM:137168|Ensembl:ENSG00000099998|HPRD:00666|Vega:OTTHUMG00000150796 22 22q11.23 gamma-glutamyltransferase 5 protein-coding GGT5 gamma-glutamyltransferase 5 O GGT 5|gamma-glutamyl cleaving enzyme|gamma-glutamyl transpeptidase-related enzyme|gamma-glutamyl transpeptidase-related protein|gamma-glutamyltransferase-like activity 1|gamma-glutamyltranspeptidase 5|glutathione hydrolase 5|leukotriene-C4 hydrolase 20121230 -9606 2688 GH1 - GH|GH-N|GHN|IGHD1B|hGH-N HGNC:4261|MIM:139250|Ensembl:ENSG00000259384|HPRD:00751|Vega:OTTHUMG00000172293 17 17q24.2 growth hormone 1 protein-coding GH1 growth hormone 1 O pituitary growth hormone|somatotropin 20121230 -9606 2689 GH2 - GH-V|GHL|GHV|hGH-V HGNC:4262|MIM:139240|Ensembl:ENSG00000136487|HPRD:00750|Vega:OTTHUMG00000172284 17 17q24.2 growth hormone 2 protein-coding GH2 growth hormone 2 O growth hormone variant|placenta-specific growth hormone|placental-specific growth hormone 20121230 -9606 2690 GHR - GHBP HGNC:4263|MIM:600946|Ensembl:ENSG00000112964|HPRD:02971|Vega:OTTHUMG00000094791 5 5p13-p12 growth hormone receptor protein-coding GHR growth hormone receptor O GH receptor|growth hormone binding protein|serum binding protein|somatotropin receptor 20121230 -9606 2691 GHRH - GHRF|GRF|INN HGNC:4265|MIM:139190|Ensembl:ENSG00000118702|HPRD:11752|Vega:OTTHUMG00000032413 20 20q11.2 growth hormone releasing hormone protein-coding GHRH growth hormone releasing hormone O growth hormone-releasing factor|growth hormone-releasing hormone|sermorelin|somatocrinin|somatoliberin|somatorelin 20121230 -9606 2692 GHRHR - GHRFR|GRFR|IGHD1B HGNC:4266|MIM:139191|Ensembl:ENSG00000106128|HPRD:00748|Vega:OTTHUMG00000152801 7 7p14 growth hormone releasing hormone receptor protein-coding GHRHR growth hormone releasing hormone receptor O GHRH receptor|GRF receptor|growth hormone-releasing hormone receptor 20121230 -9606 2693 GHSR - - HGNC:4267|MIM:601898|Ensembl:ENSG00000121853|HPRD:03541|Vega:OTTHUMG00000156946 3 3q26.31 growth hormone secretagogue receptor protein-coding GHSR growth hormone secretagogue receptor O GH-releasing peptide receptor|GHRP|GHS-R|ghrelin receptor|growth hormone secretagogue receptor type 1 20121230 -9606 2694 GIF - IF|IFMH|INF|TCN3 HGNC:4268|MIM:609342|Ensembl:ENSG00000134812|HPRD:02024|Vega:OTTHUMG00000167399 11 11q13 gastric intrinsic factor (vitamin B synthesis) protein-coding GIF gastric intrinsic factor (vitamin B synthesis) O gastric intrinsic factor|intrinsic factor 20121230 -9606 2695 GIP - - HGNC:4270|MIM:137240|Ensembl:ENSG00000159224|HPRD:15925|Vega:OTTHUMG00000161171 17 17q21.3-q22 gastric inhibitory polypeptide protein-coding GIP gastric inhibitory polypeptide O glucose-dependent insulinotropic polypeptide|incretin hormone 20121230 -9606 2696 GIPR - PGQTL2 HGNC:4271|MIM:137241|Ensembl:ENSG00000010310|HPRD:00670|Vega:OTTHUMG00000182129 19 19q13.3 gastric inhibitory polypeptide receptor protein-coding GIPR gastric inhibitory polypeptide receptor O GIP-R|glucose-dependent insulinotropic polypeptide receptor 20121230 -9606 2697 GJA1 - AVSD3|CX43|DFNB38|GJAL|HLHS1|HSS|ODDD HGNC:4274|MIM:121014|Ensembl:ENSG00000152661|HPRD:00414|Vega:OTTHUMG00000015479 6 6q21-q23.2 gap junction protein, alpha 1, 43kDa protein-coding GJA1 gap junction protein, alpha 1, 43kDa O connexin 43|connexin-43|gap junction 43 kDa heart protein|gap junction alpha-1 protein 20121230 -9606 2698 GJA1P1 - - HGNC:4275 5 5q21.3 gap junction protein, alpha 1, 43kDa pseudogene 1 pseudo GJA1P1 gap junction protein, alpha 1, 43kDa pseudogene 1 O - 20121230 -9606 2700 GJA3 - CX46|CZP3 HGNC:4277|MIM:121015|Ensembl:ENSG00000121743|HPRD:00415|Vega:OTTHUMG00000016510 13 13q12.11 gap junction protein, alpha 3, 46kDa protein-coding GJA3 gap junction protein, alpha 3, 46kDa O connexin 46|connexin-46|gap junction alpha-3 protein 20121230 -9606 2701 GJA4 RP1-34M23.4 CX37 HGNC:4278|MIM:121012|Ensembl:ENSG00000187513|HPRD:08509|Vega:OTTHUMG00000004050 1 1p35.1 gap junction protein, alpha 4, 37kDa protein-coding GJA4 gap junction protein, alpha 4, 37kDa O connexin 37|connexin-37|gap junction alpha-4 protein 20121230 -9606 2702 GJA5 - ATFB11|CX40 HGNC:4279|MIM:121013|Ensembl:ENSG00000143140|HPRD:08699|Vega:OTTHUMG00000014020 1 1q21.1 gap junction protein, alpha 5, 40kDa protein-coding GJA5 gap junction protein, alpha 5, 40kDa O connexin 40|connexin-40|gap junction alpha-5 protein 20121230 -9606 2703 GJA8 - CAE|CAE1|CX50|CZP1|MP70 HGNC:4281|MIM:600897|Ensembl:ENSG00000121634|HPRD:02939 1 1q21.1 gap junction protein, alpha 8, 50kDa protein-coding GJA8 gap junction protein, alpha 8, 50kDa O cell surface glycoprotein|connexin 50|connexin-50|gap junction alpha-8 protein|gap junction membrane channel protein alpha-8|lens fiber protein MP70|lens intrinsic membrane protein MP70 20121230 -9606 2705 GJB1 - CMTX|CMTX1|CX32 HGNC:4283|MIM:304040|Ensembl:ENSG00000169562|HPRD:02367|Vega:OTTHUMG00000021797 X Xq13.1 gap junction protein, beta 1, 32kDa protein-coding GJB1 gap junction protein, beta 1, 32kDa O GAP junction 28 kDa liver protein|connexin 32|connexin-32|gap junction beta-1 protein 20121230 -9606 2706 GJB2 - CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK HGNC:4284|MIM:121011|Ensembl:ENSG00000165474|HPRD:00413|Vega:OTTHUMG00000016513 13 13q11-q12 gap junction protein, beta 2, 26kDa protein-coding GJB2 gap junction protein, beta 2, 26kDa O connexin 26|gap junction beta-2 protein|gap junction protein beta 2 20121230 -9606 2707 GJB3 - CX31|DFNA2|DFNA2B|EKV HGNC:4285|MIM:603324|Ensembl:ENSG00000188910|HPRD:04505|Vega:OTTHUMG00000004051 1 1p34 gap junction protein, beta 3, 31kDa protein-coding GJB3 gap junction protein, beta 3, 31kDa O connexin 31|connexin-31|gap junction beta-3 protein 20121230 -9606 2709 GJB5 - CX31.1 HGNC:4287|MIM:604493|Ensembl:ENSG00000189280|HPRD:06840|Vega:OTTHUMG00000004053 1 1p35.1 gap junction protein, beta 5, 31.1kDa protein-coding GJB5 gap junction protein, beta 5, 31.1kDa O gap junction beta-5 protein|gap junction protein, beta 5 (connexin 31.1)|gap junctional protein cx31.1 20121230 -9606 2710 GK - GK1|GKD HGNC:4289|MIM:300474|Ensembl:ENSG00000198814|HPRD:08363|Vega:OTTHUMG00000021328 X Xp21.3 glycerol kinase protein-coding GK glycerol kinase O ATP:glycerol 3-phosphotransferase|glycerokinase 20121230 -9606 2712 GK2 - GKP2|GKTA HGNC:4291|MIM:600148|Ensembl:ENSG00000196475|HPRD:15966|Vega:OTTHUMG00000130199 4 4q13 glycerol kinase 2 protein-coding GK2 glycerol kinase 2 O ATP:glycerol 3-phosphotransferase 2|glycerokinase 2|glycerol kinase pseudogene 2|glycerol kinase testis specific 2|glycerol kinase, testis specific 2 20121230 -9606 2713 GK3P - GKP3|GKTB HGNC:4292|MIM:600149 4 4q32.1 glycerol kinase 3 pseudogene pseudo GK3P glycerol kinase 3 pseudogene O - 20121230 -9606 2716 GK4P - GKP6 HGNC:4295 X Xq22.1 glycerol kinase 4 pseudogene pseudo GK4P glycerol kinase 4 pseudogene O - 20121230 -9606 2717 GLA - GALA HGNC:4296|MIM:300644|Ensembl:ENSG00000102393|HPRD:02357|Vega:OTTHUMG00000022026 X Xq22 galactosidase, alpha protein-coding GLA galactosidase, alpha O agalsidase alfa|alpha-D-galactosidase A|alpha-D-galactoside galactohydrolase 1|alpha-gal A|alpha-galactosidase A|melibiase 20121230 -9606 2718 GLAT - - HGNC:4297|MIM:137030 2 2p22-p11 galactose enzyme activator unknown GLAT galactose enzyme activator O - 20080828 -9606 2719 GPC3 AC002420.1 DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1 HGNC:4451|MIM:300037|Ensembl:ENSG00000147257|HPRD:02074|Vega:OTTHUMG00000022448 X Xq26.1 glypican 3 protein-coding GPC3 glypican 3 O glypican proteoglycan 3|glypican-3|heparan sulphate proteoglycan|intestinal protein OCI-5|secreted glypican-3 20121230 -9606 2720 GLB1 - EBP|ELNR1|MPS4B HGNC:4298|MIM:611458|Ensembl:ENSG00000170266|HPRD:01975|Vega:OTTHUMG00000155781 3 3p21.33 galactosidase, beta 1 protein-coding GLB1 galactosidase, beta 1 O acid beta-galactosidase|beta-galactosidase|elastin receptor 1, 67kDa|lactase 20121230 -9606 2722 GLC1B - - HGNC:4302|MIM:606689 2 2cen-q13 glaucoma 1, open angle, B (adult-onset) unknown GLC1B glaucoma 1, open angle, B (adult-onset) O - 20120622 -9606 2723 GLC1C - - HGNC:4303|MIM:601682 3 3q21-q24 glaucoma 1, open angle, C unknown GLC1C glaucoma 1, open angle, C O - 20120622 -9606 2724 GLC1D - - HGNC:4304|MIM:602429 8 8q23 glaucoma 1, open angle, D (adult-onset) unknown GLC1D glaucoma 1, open angle, D (adult-onset) O - 20120622 -9606 2726 GLC1F - - HGNC:4306|MIM:603383 7 7q35-q36 glaucoma 1, open angle, F (adult-onset) unknown GLC1F glaucoma 1, open angle, F (adult-onset) O - 20120622 -9606 2727 GLC2A - - HGNC:4307 - - glaucoma 2, angle closure unknown GLC2A glaucoma 2, angle closure O - 20110215 -9606 2728 GLC3B - - HGNC:4309|MIM:600975 1 1p36 glaucoma 3, primary infantile, B unknown GLC3B glaucoma 3, primary infantile, B O - 20120622 -9606 2729 GCLC - GCL|GCS|GLCL|GLCLC HGNC:4311|MIM:606857|Ensembl:ENSG00000001084|HPRD:06032|Vega:OTTHUMG00000160220 6 6p12 glutamate-cysteine ligase, catalytic subunit protein-coding GCLC glutamate-cysteine ligase, catalytic subunit O GCS heavy chain|gamma-ECS|gamma-glutamylcysteine synthetase|glutamate--cysteine ligase catalytic subunit 20121230 -9606 2730 GCLM RP4-561L24.2 GLCLR HGNC:4312|MIM:601176|Ensembl:ENSG00000023909|HPRD:03106|Vega:OTTHUMG00000010562 1 1p22.1 glutamate-cysteine ligase, modifier subunit protein-coding GCLM glutamate-cysteine ligase, modifier subunit O GCS light chain|GSC light chain|gamma-ECS regulatory subunit|gamma-glutamylcysteine synthetase regulatory subunit|glutamate--cysteine ligase modifier subunit|glutamate--cysteine ligase regulatory subunit|glutamate-cysteine ligase (gamma-glutamylcysteine synthetase), regulatory (30.8kD)|glutamate-cysteine ligase regulatory protein 20121230 -9606 2731 GLDC RP11-472F14.1 GCE|GCSP|HYGN1 HGNC:4313|MIM:238300|Ensembl:ENSG00000178445|HPRD:01996|Vega:OTTHUMG00000019524 9 9p22 glycine dehydrogenase (decarboxylating) protein-coding GLDC glycine dehydrogenase (decarboxylating) O glycine cleavage system protein P|glycine decarboxylase P-protein|glycine dehydrogenase [decarboxylating], mitochondrial 20121230 -9606 2732 GLDCP1 - GLDCP HGNC:4314 4 4q12 glycine dehydrogenase (decarboxylase) pseudogene 1 pseudo GLDCP1 glycine dehydrogenase (decarboxylase) pseudogene 1 O - 20121230 -9606 2733 GLE1 - GLE1L|LCCS|LCCS1|hGLE1 HGNC:4315|MIM:603371|Ensembl:ENSG00000119392|HPRD:04536|Vega:OTTHUMG00000020749 9 9q34.11 GLE1 RNA export mediator homolog (yeast) protein-coding GLE1 GLE1 RNA export mediator homolog (yeast) O GLE1-like protein|GLE1-like, RNA export mediator|nucleoporin GLE1 20121230 -9606 2734 GLG1 - CFR-1|ESL-1|MG-160|MG160 HGNC:4316|MIM:600753|Ensembl:ENSG00000090863|HPRD:02855|Vega:OTTHUMG00000177174 16 16q22.3 golgi glycoprotein 1 protein-coding GLG1 golgi glycoprotein 1 O E-selectin ligand 1|Golgi apparatus protein 1|cysteine-rich fibroblast growth factor receptor|golgi sialoglycoprotein MG-160 20121230 -9606 2735 GLI1 - GLI HGNC:4317|MIM:165220|Ensembl:ENSG00000111087|HPRD:01311|Vega:OTTHUMG00000167332 12 12q13.2-q13.3 GLI family zinc finger 1 protein-coding GLI1 GLI family zinc finger 1 O glioma-associated oncogene 1|glioma-associated oncogene homolog 1 (zinc finger protein)|oncogene GLI|zinc finger protein GLI1 20121230 -9606 2736 GLI2 - HPE9|THP1|THP2 HGNC:4318|MIM:165230|Ensembl:ENSG00000074047|HPRD:01312|Vega:OTTHUMG00000153741 2 2q14 GLI family zinc finger 2 protein-coding GLI2 GLI family zinc finger 2 O GLI-Kruppel family member GLI2|glioma-associated oncogene family zinc finger 2|oncogene GLI2|tax helper protein 1|tax helper protein 2|tax-responsive element-2 holding protein|tax-responsive element-25-bp sequence binding protein|zinc finger protein GLI2 20121230 -9606 2737 GLI3 - ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV HGNC:4319|MIM:165240|Ensembl:ENSG00000106571|HPRD:01313|Vega:OTTHUMG00000023630 7 7p13 GLI family zinc finger 3 protein-coding GLI3 GLI family zinc finger 3 O GLI-Kruppel family member GLI3|glioma-associated oncogene family zinc finger 3|oncogene GLI3|transcriptional activator GLI3|zinc finger protein GLI3 20121230 -9606 2738 GLI4 hCG_1995022 HKR4|ZNF928 HGNC:4320|MIM:165280|Ensembl:ENSG00000250571|HPRD:01317|Vega:OTTHUMG00000164952 8 8q24.3 GLI family zinc finger 4 protein-coding GLI4 GLI family zinc finger 4 O GLI-Kruppel family member GLI4 (oncogene HKR4)|glioma-associated oncogene family zinc finger 4|krueppel-related zinc finger protein 4|zinc finger protein GLI4 20121230 -9606 2739 GLO1 - GLOD1|GLYI HGNC:4323|MIM:138750|Ensembl:ENSG00000124767|HPRD:00730|Vega:OTTHUMG00000014636 6 6p21.3-p21.1 glyoxalase I protein-coding GLO1 glyoxalase I O S-D-lactoylglutathione methylglyoxal lyase|aldoketomutase|glx I|glyoxalase domain containing 1|ketone-aldehyde mutase|lactoyl glutathione lyase|lactoylglutathione lyase|methylglyoxalase 20121230 -9606 2740 GLP1R - - HGNC:4324|MIM:138032|Ensembl:ENSG00000112164|HPRD:00677|Vega:OTTHUMG00000014638 6 6p21 glucagon-like peptide 1 receptor protein-coding GLP1R glucagon-like peptide 1 receptor O GLP-1 receptor|GLP-1-R|GLP-1R 20121230 -9606 2741 GLRA1 - HKPX1|STHE HGNC:4326|MIM:138491|Ensembl:ENSG00000145888|HPRD:00719|Vega:OTTHUMG00000130121 5 5q32 glycine receptor, alpha 1 protein-coding GLRA1 glycine receptor, alpha 1 O glycine receptor 48 kDa subunit|glycine receptor strychnine-binding subunit|glycine receptor subunit alpha-1 20121230 -9606 2742 GLRA2 - GLR HGNC:4327|MIM:305990|Ensembl:ENSG00000101958|HPRD:02379|Vega:OTTHUMG00000021166 X Xp22.2 glycine receptor, alpha 2 protein-coding GLRA2 glycine receptor, alpha 2 O glycine receptor alpha 2 subunit|glycine receptor subunit alpha-2|glycine receptor, alpha-2 polypeptide 20121230 -9606 2743 GLRB - HKPX2 HGNC:4329|MIM:138492|Ensembl:ENSG00000109738|HPRD:11751|Vega:OTTHUMG00000161954 4 4q31.3 glycine receptor, beta protein-coding GLRB glycine receptor, beta O glycine receptor 58 kDa subunit|glycine receptor subunit beta|glycine receptor, beta subunit 20121230 -9606 2744 GLS - AAD20|GAC|GAM|GLS1|KGA HGNC:4331|MIM:138280|Ensembl:ENSG00000115419|HPRD:00700|Vega:OTTHUMG00000132701 2 2q32-q34 glutaminase protein-coding GLS glutaminase O K-glutaminase|L-glutamine amidohydrolase|glutaminase C|glutaminase kidney isoform, mitochondrial|glutaminase, phosphate-activated 20121230 -9606 2745 GLRX - GRX|GRX1 HGNC:4330|MIM:600443|Ensembl:ENSG00000173221|HPRD:02707|Vega:OTTHUMG00000121167 5 5q14 glutaredoxin (thioltransferase) protein-coding GLRX glutaredoxin (thioltransferase) O TTase-1|glutaredoxin-1|thioltransferase-1 20121230 -9606 2746 GLUD1 - GDH|GDH1|GLUD HGNC:4335|MIM:138130|Ensembl:ENSG00000148672|HPRD:11748|Vega:OTTHUMG00000018666 10 10q23.3 glutamate dehydrogenase 1 protein-coding GLUD1 glutamate dehydrogenase 1 O GDH 1|glutamate dehydrogenase (NAD(P)+)|glutamate dehydrogenase 1, mitochondrial 20121230 -9606 2747 GLUD2 - GDH2|GLUDP1 HGNC:4336|MIM:300144|Ensembl:ENSG00000182890|HPRD:02143|Vega:OTTHUMG00000022320 X Xq24-q25 glutamate dehydrogenase 2 protein-coding GLUD2 glutamate dehydrogenase 2 O GDH 2|glutamate dehydrogenase 2, mitochondrial|glutamate dehydrogenase pseudogene 1 20121230 -9606 2748 LOC2748 - - - 10 10q11.2 glutamate dehydrogenase 1 pseudogene pseudo - - - - 20121209 -9606 2749 GLUD1P3 - C10orf102|Em:AC022400.11|GLUDP3|RP11-574K11.12 HGNC:4338 10 10q22.2 glutamate dehydrogenase 1 pseudogene 3 pseudo GLUD1P3 glutamate dehydrogenase 1 pseudogene 3 O - 20121230 -9606 2750 GLUD1P4 - GLUDP4 HGNC:4339 18 18q21.32 glutamate dehydrogenase 1 pseudogene 4 pseudo GLUD1P4 glutamate dehydrogenase 1 pseudogene 4 O - 20121230 -9606 2751 GLUD1P5 - GLUDP5 HGNC:4340 10 10p11.2 glutamate dehydrogenase 1 pseudogene 5 pseudo GLUD1P5 glutamate dehydrogenase 1 pseudogene 5 O - 20121230 -9606 2752 GLUL - GLNS|GS|PIG43|PIG59 HGNC:4341|MIM:138290|Ensembl:ENSG00000135821|HPRD:00701|Vega:OTTHUMG00000037407 1 1q31 glutamate-ammonia ligase protein-coding GLUL glutamate-ammonia ligase O cell proliferation-inducing protein 59|glutamate decarboxylase|glutamate--ammonia ligase|glutamine synthase|glutamine synthetase|proliferation-inducing protein 43 20121230 -9606 2753 GLULP1 - GLULL1 HGNC:4342 5 5q33 glutamate-ammonia ligase (glutamine synthetase) pseudogene 1 pseudo GLULP1 glutamate-ammonia ligase (glutamine synthetase) pseudogene 1 O - 20121230 -9606 2754 GLULP2 - GLULL2 HGNC:4343 11 11p15.4 glutamate-ammonia ligase (glutamine synthetase) pseudogene 2 pseudo GLULP2 glutamate-ammonia ligase (glutamine synthetase) pseudogene 2 O - 20121230 -9606 2757 GLYB - - HGNC:4363|MIM:138480 8 8q21.1-qter glycine B complementing unknown GLYB glycine B complementing O - 20080828 -9606 2759 GLYS1 - - HGNC:4365|MIM:233100 6 6p21.3 glycosuria 1, renal unknown GLYS1 glycosuria 1, renal O - 20110714 -9606 2760 GM2A - GM2-AP|SAP-3 HGNC:4367|MIM:613109|Ensembl:ENSG00000196743|HPRD:02034|Vega:OTTHUMG00000130124 5 5q33.1 GM2 ganglioside activator protein-coding GM2A GM2 ganglioside activator O cerebroside sulfate activator protein|ganglioside GM2 activator|shingolipid activator protein 3|sphingolipid activator protein 3 20121230 -9606 2761 GM2AP1 - GM2AP HGNC:4368 3 3q24 GM2 ganglioside activator pseudogene 1 pseudo GM2AP1 GM2 ganglioside activator pseudogene 1 O - 20121230 -9606 2762 GMDS RP1-118B18.1 GMD|SDR3E1 HGNC:4369|MIM:602884|Ensembl:ENSG00000112699|HPRD:11925|Vega:OTTHUMG00000016143 6 6p25 GDP-mannose 4,6-dehydratase protein-coding GMDS GDP-mannose 4,6-dehydratase O GDP-D-mannose dehydratase|GDP-mannose 4,6 dehydratase|short chain dehydrogenase/reductase family 3E, member 1 20121230 -9606 2763 GMFA - - HGNC:4372 - - glia maturation factor, alpha protein-coding GMFA glia maturation factor, alpha O - 20080828 -9606 2764 GMFB - GMF HGNC:4373|MIM:601713|Ensembl:ENSG00000197045|Vega:OTTHUMG00000140307 14 14q22.2 glia maturation factor, beta protein-coding GMFB glia maturation factor, beta O GMF-beta|glia maturation factor beta 20121230 -9606 2765 GML - LY6DL HGNC:4375|MIM:602370|Ensembl:ENSG00000104499|HPRD:03844|Vega:OTTHUMG00000164656 8 8q24.3 glycosylphosphatidylinositol anchored molecule like protein-coding GML glycosylphosphatidylinositol anchored molecule like O GPI anchored molecule like protein|Glycosylphosphatidylinositol-anchored molecule-like protein|glycosyl-phosphatidylinositol-anchored molecule-like protein|glycosylphosphatidylinositol anchored molecule like protein 20121230 -9606 2766 GMPR RP3-467D16.2 GMPR1 HGNC:4376|MIM:139265|Ensembl:ENSG00000137198|HPRD:00754|Vega:OTTHUMG00000014302 6 6p23 guanosine monophosphate reductase protein-coding GMPR guanosine monophosphate reductase O GMP reductase 1|guanine monophosphate reductase|guanosine 5'-monophosphate oxidoreductase 1|guanosine monophosphate reductase 1 20121230 -9606 2767 GNA11 - GNA-11 HGNC:4379|MIM:139313|Ensembl:ENSG00000088256|HPRD:00759|Vega:OTTHUMG00000180631 19 19p13.3 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) protein-coding GNA11 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) O G-protein subunit alpha-11|g alpha-11|guanine nucleotide-binding protein G(y) subunit alpha|guanine nucleotide-binding protein subunit alpha-11|guanine nucleotide-binding protein, Gq class, GNA11 20121230 -9606 2768 GNA12 - NNX3|RMP|gep HGNC:4380|MIM:604394|Ensembl:ENSG00000146535|HPRD:05093|Vega:OTTHUMG00000023064 7 7p22.2 guanine nucleotide binding protein (G protein) alpha 12 protein-coding GNA12 guanine nucleotide binding protein (G protein) alpha 12 O G-protein subunit alpha-12|WUGSC:H_GS165O14.2|g alpha-12|guanine nucleotide-binding protein subunit alpha-12 20121230 -9606 2769 GNA15 - GNA16 HGNC:4383|MIM:139314|Ensembl:ENSG00000060558|HPRD:00760|Vega:OTTHUMG00000180637 19 19p13.3 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) protein-coding GNA15 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) O G-protein subunit alpha-15|G-protein subunit alpha-16|epididymis tissue protein Li 17E|g alpha-15|g alpha-16|guanine nucleotide-binding protein subunit alpha-15|guanine nucleotide-binding protein subunit alpha-16 20121230 -9606 2770 GNAI1 - Gi HGNC:4384|MIM:139310|Ensembl:ENSG00000127955|HPRD:00756|Vega:OTTHUMG00000023523 7 7q21 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 protein-coding GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 O Gi1 protein alpha subunit|adenylate cyclase-inhibiting G alpha protein|guanine nucleotide-binding protein G(i) subunit alpha-1 20121230 -9606 2771 GNAI2 - GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 HGNC:4385|MIM:139360|Ensembl:ENSG00000114353|HPRD:00764|Vega:OTTHUMG00000156940 3 3p21.31 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 protein-coding GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 O GTP-binding regulatory protein Gi alpha-2 chain|adenylate cyclase-inhibiting G alpha protein|guanine nucleotide-binding protein G(i) subunit alpha-2|guanine nucleotide-binding protein G(i), alpha-2 subunit 20121230 -9606 2772 GNAI2P1 - GNAI2A|GNAI2L HGNC:4386|MIM:139180 12 12p13.1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 pseudogene 1 pseudo GNAI2P1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 pseudogene 1 O - 20121230 -9606 2773 GNAI3 RP5-1160K1.2 87U6|ARCND1 HGNC:4387|MIM:139370|Ensembl:ENSG00000065135|HPRD:00765|Vega:OTTHUMG00000011648 1 1p13 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 protein-coding GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 O g(i) alpha-3|guanine nucleotide-binding protein G(k) subunit alpha 20121230 -9606 2774 GNAL - - HGNC:4388|MIM:139312|Ensembl:ENSG00000141404|HPRD:00758|Vega:OTTHUMG00000131660 18 18p11.22-p11.21 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type protein-coding GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type O adenylate cyclase-stimulating G alpha protein, olfactory type|guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide, olfactory type|guanine nucleotide-binding protein G(olf) subunit alpha 20121230 -9606 2775 GNAO1 - G-ALPHA-o|GNAO HGNC:4389|MIM:139311|Ensembl:ENSG00000087258|HPRD:00757|Vega:OTTHUMG00000133241 16 16q13 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O protein-coding GNAO1 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O O guanine nucleotide-binding protein G(o) subunit alpha 20121230 -9606 2776 GNAQ RP11-494N1.1 G-ALPHA-q|GAQ HGNC:4390|MIM:600998|Ensembl:ENSG00000156052|HPRD:02998|Vega:OTTHUMG00000020059 9 9q21 guanine nucleotide binding protein (G protein), q polypeptide protein-coding GNAQ guanine nucleotide binding protein (G protein), q polypeptide O guanine nucleotide-binding protein G(q) subunit alpha|guanine nucleotide-binding protein alpha-q 20121230 -9606 2777 GNAQP1 - GNAQP HGNC:4391 2 2q21.1 guanine nucleotide binding protein (G protein), q polypeptide pseudogene 1 pseudo GNAQP1 guanine nucleotide binding protein (G protein), q polypeptide pseudogene 1 O - 20121230 -9606 2778 GNAS RP4-543J19.4 AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH HGNC:4392|MIM:139320|Ensembl:ENSG00000087460|HPRD:00761|Vega:OTTHUMG00000033069 20 20q13.3 GNAS complex locus protein-coding GNAS GNAS complex locus O adenylate cyclase-stimulating G alpha protein|alternative gene product encoded by XL-exon|extra large alphas protein|guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1|guanine nucleotide regulatory protein|guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas|neuroendocrine secretory protein|protein ALEX|secretogranin VI 20121230 -9606 2779 GNAT1 - CSNBAD3|GBT1|GNATR HGNC:4393|MIM:139330|Ensembl:ENSG00000114349|HPRD:08850|Vega:OTTHUMG00000156808 3 3p21 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 protein-coding GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 O guanine nucleotide-binding protein G(T), alpha-1 subunit|guanine nucleotide-binding protein G(t) subunit alpha-1|rod-type transducin alpha subunit|transducin alpha-1 chain|transducin, rod-specific 20121230 -9606 2780 GNAT2 RP5-1160K1.4 ACHM4|GNATC HGNC:4394|MIM:139340|Ensembl:ENSG00000134183|HPRD:00762|Vega:OTTHUMG00000011639 1 1p13.1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 protein-coding GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 O cone-type transducin alpha subunit|guanine nucleotide-binding protein G(t) subunit alpha-2|transducin alpha-2 chain|transducin, cone-specific, alpha polypeptide 20121230 -9606 2781 GNAZ - - HGNC:4395|MIM:139160|Ensembl:ENSG00000128266|HPRD:00746|Vega:OTTHUMG00000150611 22 22q11.22 guanine nucleotide binding protein (G protein), alpha z polypeptide protein-coding GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide O g(x) alpha chain|guanine nucleotide-binding protein G(z) subunit alpha|gz-alpha|transducin alpha 20121230 -9606 2782 GNB1 RP1-283E3.7 - HGNC:4396|MIM:139380|Ensembl:ENSG00000078369|HPRD:00766|Vega:OTTHUMG00000000940 1 1p36.33 guanine nucleotide binding protein (G protein), beta polypeptide 1 protein-coding GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 O G protein, beta-1 subunit|beta subunit, signal-transducing proteins GS/GI|guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1|guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1|transducin beta chain 1 20121230 -9606 2783 GNB2 - - HGNC:4398|MIM:139390|Ensembl:ENSG00000172354|HPRD:11820|Vega:OTTHUMG00000137419 7 7q22 guanine nucleotide binding protein (G protein), beta polypeptide 2 protein-coding GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 O G protein, beta-2 subunit|g protein subunit beta-2|guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2|guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2|signal-transducing guanine nucleotide-binding regulatory protein beta subunit|transducin beta chain 2 20121230 -9606 2784 GNB3 - - HGNC:4400|MIM:139130|Ensembl:ENSG00000111664|HPRD:00743|Vega:OTTHUMG00000168517 12 12p13 guanine nucleotide binding protein (G protein), beta polypeptide 3 protein-coding GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3 O G protein, beta-3 subunit|GTP-binding regulatory protein beta-3 chain|guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 3|guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3|hypertension associated protein|transducin beta chain 3 20121230 -9606 2785 GNG3 - - HGNC:4405|MIM:608941|Ensembl:ENSG00000162188|HPRD:12337|Vega:OTTHUMG00000167560 11 11p11 guanine nucleotide binding protein (G protein), gamma 3 protein-coding GNG3 guanine nucleotide binding protein (G protein), gamma 3 O NBP gamma-3|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3|guanine nucleotide-binding protein gamma-3 subunit 20121230 -9606 2786 GNG4 - - HGNC:4407|MIM:604388|Ensembl:ENSG00000168243|HPRD:11978|Vega:OTTHUMG00000040740 1 1q42.3 guanine nucleotide binding protein (G protein), gamma 4 protein-coding GNG4 guanine nucleotide binding protein (G protein), gamma 4 O guanine nucleotide binding protein 4|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4 20121230 -9606 2787 GNG5 - - HGNC:4408|MIM:600874|Ensembl:ENSG00000174021|HPRD:11865|Vega:OTTHUMG00000009858 1 1p22 guanine nucleotide binding protein (G protein), gamma 5 protein-coding GNG5 guanine nucleotide binding protein (G protein), gamma 5 O guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 20121230 -9606 2788 GNG7 - - HGNC:4410|MIM:604430|Ensembl:ENSG00000176533|HPRD:07638|HPRD:10376|Vega:OTTHUMG00000180435 19 19p13.3 guanine nucleotide binding protein (G protein), gamma 7 protein-coding GNG7 guanine nucleotide binding protein (G protein), gamma 7 O guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7 20121230 -9606 2789 GNG5P1 - GNG5P HGNC:4409 6 6q27 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 1 pseudo GNG5P1 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 1 O - 20121230 -9606 2790 GNG10 - - HGNC:4402|MIM:604389|Ensembl:ENSG00000242616|Vega:OTTHUMG00000157193 9 9q31.3 guanine nucleotide binding protein (G protein), gamma 10 protein-coding GNG10 guanine nucleotide binding protein (G protein), gamma 10 O guanine nucleotide binding protein 10|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10 20121230 -9606 2791 GNG11 - GNGT11 HGNC:4403|MIM:604390|Ensembl:ENSG00000127920|HPRD:11979|Vega:OTTHUMG00000023411 7 7q21 guanine nucleotide binding protein (G protein), gamma 11 protein-coding GNG11 guanine nucleotide binding protein (G protein), gamma 11 O G protein gamma-11 subunit|guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-11 subunit|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11 20121230 -9606 2792 GNGT1 - GNG1 HGNC:4411|MIM:189970|Ensembl:ENSG00000127928|HPRD:01805|Vega:OTTHUMG00000022908 7 7q21.3 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 protein-coding GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 O guanine nucleotide-binding protein G(T) subunit gamma-T1|transducin gamma chain 20121230 -9606 2793 GNGT2 - G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 HGNC:4412|MIM:139391|Ensembl:ENSG00000167083|HPRD:06792|Vega:OTTHUMG00000161308 17 17q21 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 protein-coding GNGT2 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 O G protein cone gamma 8 subunit|G-gamma-9|g gamma-C|gamma-T2 subunit|guanine nucleotide binding protein gamma 9|guanine nucleotide binding protein gamma transducing activity polypeptide 2|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2 20121230 -9606 2794 GNL1 DAAP-394O23.2 HSR1 HGNC:4413|MIM:143024|Ensembl:ENSG00000204590|HPRD:00879|Vega:OTTHUMG00000031137 6 6p21.3 guanine nucleotide binding protein-like 1 protein-coding GNL1 guanine nucleotide binding protein-like 1 O GTP-binding protein HSR1|HSR1 GTP-binding protein|guanine nucleotide-binding protein-like 1 20121230 -9606 2796 GNRH1 - GNRH|GRH|HH12|LHRH|LNRH HGNC:4419|MIM:152760|Ensembl:ENSG00000147437|HPRD:08860|Vega:OTTHUMG00000163852 8 8p21-p11.2 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) protein-coding GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) O GnRH-associated peptide 1|gonadotropin-releasing hormone 1 (leutinizing-releasing hormone)|luliberin I|progonadoliberin I|progonadoliberin-1|prolactin release-inhibiting factor 20121230 -9606 2797 GNRH2 - GnRH-II|LH-RHII HGNC:4420|MIM:602352|Ensembl:ENSG00000125787|HPRD:03830|Vega:OTTHUMG00000031723 20 20p13 gonadotropin-releasing hormone 2 protein-coding GNRH2 gonadotropin-releasing hormone 2 O luliberin II|luteinizing hormone-releasing hormone II|progonadoliberin II|progonadoliberin-2 20121230 -9606 2798 GNRHR - GNRHR1|GRHR|HH7|LHRHR|LRHR HGNC:4421|MIM:138850|Ensembl:ENSG00000109163|HPRD:00732|Vega:OTTHUMG00000129302 4 4q21.2 gonadotropin-releasing hormone receptor protein-coding GNRHR gonadotropin-releasing hormone receptor O gnRH receptor|gnRH-R|gonadotropin-releasing hormone (type 1) receptor 1|leutinizing hormone releasing horomone receptor|leutinizing-releasing hormone receptor|luliberin receptor|type I GnRH receptor 20121230 -9606 2799 GNS - G6S HGNC:4422|MIM:607664|Ensembl:ENSG00000135677|HPRD:09637|Vega:OTTHUMG00000168819 12 12q14 glucosamine (N-acetyl)-6-sulfatase protein-coding GNS glucosamine (N-acetyl)-6-sulfatase O N-acetylglucosamine-6-sulfatase|glucosamine-6-sulfatase 20121230 -9606 2800 GOLGA1 RP11-175D17.2 golgin-97 HGNC:4424|MIM:602502|Ensembl:ENSG00000136935|HPRD:03934|Vega:OTTHUMG00000020665 9 9q33.3 golgin A1 protein-coding GOLGA1 golgin A1 O Golgin subfamily A member 1|gap junction protein, alpha 4, 37kD|golgi autoantigen, golgin subfamily a, 1 20121230 -9606 2801 GOLGA2 RP11-395P17.5 GM130 HGNC:4425|MIM:602580|Ensembl:ENSG00000167110|HPRD:03989|Vega:OTTHUMG00000020732 9 9q34.11 golgin A2 protein-coding GOLGA2 golgin A2 O 130 kDa cis-Golgi matrix protein|GM130 autoantigen|Golgi matrix protein GM130|Golgin subfamily A member 2|SY11 protein|golgi autoantigen, golgin subfamily a, 2|golgin-95 20121230 -9606 2802 GOLGA3 - GCP170|MEA-2 HGNC:4426|MIM:602581|Ensembl:ENSG00000090615|HPRD:03990|Vega:OTTHUMG00000168023 12 12q24.33 golgin A3 protein-coding GOLGA3 golgin A3 O Golgi membrane associated protein|Golgi peripheral membrane protein|Golgin subfamily A member 3|SY2/SY10 protein|golgi autoantigen, golgin subfamily a, 3|golgi complex-associated protein of 170 kDa|golgin-160|golgin-165|male enhanced antigen-2 20121230 -9606 2803 GOLGA4 - GCP2|GOLG|MU-RMS-40.18|p230 HGNC:4427|MIM:602509|Ensembl:ENSG00000144674|HPRD:03941|Vega:OTTHUMG00000130799 3 3p22-p21.3 golgin A4 protein-coding GOLGA4 golgin A4 O 256 kDa golgin|72.1 protein|Golgin subfamily A member 4|golgi autoantigen, golgin subfamily a, 4|golgin-240|golgin-245|protein 72.1|trans-Golgi p230 20121230 -9606 2804 GOLGB1 - GCP|GCP372|GOLIM1 HGNC:4429|MIM:602500|Ensembl:ENSG00000173230|HPRD:03933|Vega:OTTHUMG00000159411 3 3q13 golgin B1 protein-coding GOLGB1 golgin B1 O 372 kDa Golgi complex-associated protein|Golgin subfamily B member 1|giantin|golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1|golgi integral membrane protein 1|golgin B1, golgi integral membrane protein|macrogolgin 20121230 -9606 2805 GOT1 - ASTQTL1|GIG18 HGNC:4432|MIM:138180|Ensembl:ENSG00000120053|HPRD:00687|Vega:OTTHUMG00000018882 10 10q24.1-q25.1 glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) protein-coding GOT1 glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) O aspartate aminotransferase, cytoplasmic|glutamate oxaloacetate transaminase 1|growth-inhibiting protein 18|transaminase A 20121230 -9606 2806 GOT2 - KAT4|KATIV|mitAAT HGNC:4433|MIM:138150|Ensembl:ENSG00000125166|HPRD:00684|Vega:OTTHUMG00000133769 16 16q21 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) protein-coding GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) O FABP-1|FABPpm|aspartate aminotransferase, mitochondrial|fatty acid-binding protein|glutamate oxaloacetate transaminase 2|kynurenine aminotransferase 4|kynurenine aminotransferase IV|kynurenine--oxoglutarate transaminase 4|kynurenine--oxoglutarate transaminase IV|mAspAT|plasma membrane-associated fatty acid-binding protein|transaminase A 20121230 -9606 2810 SFN - YWHAS HGNC:10773|MIM:601290|Ensembl:ENSG00000175793|HPRD:03185|Vega:OTTHUMG00000004093 1 1p36.11 stratifin protein-coding SFN stratifin O 14-3-3 protein sigma|14-3-3 sigma|epithelial cell marker protein 1 20121230 -9606 2811 GP1BA - BDPLT1|BDPLT3|BSS|CD42B|CD42b-alpha|DBPLT3|GP1B|GPIbA|VWDP HGNC:4439|MIM:606672|Ensembl:ENSG00000185245|HPRD:01976|Vega:OTTHUMG00000177946 17 17pter-p12 glycoprotein Ib (platelet), alpha polypeptide protein-coding GP1BA glycoprotein Ib (platelet), alpha polypeptide O GP-Ib alpha|antigen CD42b-alpha|platelet glycoprotein Ib alpha chain|platelet membrane glycoprotein 1b-alpha subunit 20121230 -9606 2812 GP1BB - BDPLT1|BS|CD42C|GPIBB HGNC:4440|MIM:138720|Ensembl:ENSG00000203618|HPRD:00729|Vega:OTTHUMG00000150397 22 22q11.21 glycoprotein Ib (platelet), beta polypeptide protein-coding GP1BB glycoprotein Ib (platelet), beta polypeptide O GP-Ib beta|GPIb-beta|antigen CD42b-beta|nuclear localization signal deleted in velocardiofacial syndrome|platelet glycoprotein Ib beta chain 20121230 -9606 2813 GP2 - ZAP75 HGNC:4441|MIM:602977|Ensembl:ENSG00000169347|HPRD:04279|Vega:OTTHUMG00000131489 16 16p12 glycoprotein 2 (zymogen granule membrane) protein-coding GP2 glycoprotein 2 (zymogen granule membrane) O pancreatic secretory granule membrane major glycoprotein GP2|pancreatic zymogen granule membrane associated protein GP2|pancreatic zymogen granule membrane protein GP-2 20121230 -9606 2814 GP5 - CD42d|GPV HGNC:4443|MIM:173511|Ensembl:ENSG00000178732|HPRD:01431 3 3q29 glycoprotein V (platelet) protein-coding GP5 glycoprotein V (platelet) O glycoprotein 5|platelet glycoprotein V 20121230 -9606 2815 GP9 - CD42a|GPIX HGNC:4444|MIM:173515|Ensembl:ENSG00000169704|HPRD:01432|Vega:OTTHUMG00000159944 3 3q21.3 glycoprotein IX (platelet) protein-coding GP9 glycoprotein IX (platelet) O GP-IX|glycoprotein 9|platelet glycoprotein IX 20121230 -9606 2817 GPC1 - glypican HGNC:4449|MIM:600395|Ensembl:ENSG00000063660|HPRD:02671|Vega:OTTHUMG00000133349 2 2q35-q37 glypican 1 protein-coding GPC1 glypican 1 O glypican proteoglycan 1|glypican-1 20121230 -9606 2819 GPD1 - GPD-C|GPDH-C|HTGTI HGNC:4455|MIM:138420|Ensembl:ENSG00000167588|HPRD:00714|Vega:OTTHUMG00000169813 12 12q12-q13 glycerol-3-phosphate dehydrogenase 1 (soluble) protein-coding GPD1 glycerol-3-phosphate dehydrogenase 1 (soluble) O glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic|glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic|glycerophosphate dehydrogenase 20121230 -9606 2820 GPD2 - GDH2|GPDM|mGPDH HGNC:4456|MIM:138430|Ensembl:ENSG00000115159|HPRD:00715|Vega:OTTHUMG00000131951 2 2q24.1 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding GPD2 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) O GPD-M|GPDH-M|glycerol-3-phosphate dehydrogenase, mitochondrial|mitochondrial glycerophosphate dehydrogenase|mtGPD 20121230 -9606 2821 GPI - AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 HGNC:4458|MIM:172400|Ensembl:ENSG00000105220|HPRD:01394|Vega:OTTHUMG00000182087 19 19q13.1 glucose-6-phosphate isomerase protein-coding GPI glucose-6-phosphate isomerase O autocrine motility factor|glucose phosphate isomerase|hexose monophosphate isomerase|hexosephosphate isomerase|neuroleukin|oxoisomerase|phosphoglucose isomerase|phosphohexomutase|phosphohexose isomerase|phosphosaccharomutase|sperm antigen 36|sperm antigen-36 20121230 -9606 2822 GPLD1 - GPIPLD|GPIPLDM|PIGPLD|PIGPLD1 HGNC:4459|MIM:602515|Ensembl:ENSG00000112293|HPRD:03946|Vega:OTTHUMG00000016104 6 6p22.1 glycosylphosphatidylinositol specific phospholipase D1 protein-coding GPLD1 glycosylphosphatidylinositol specific phospholipase D1 O GPI-PLD|GPI-specific phospholipase D|PI-G PLD|glycoprotein phospholipase D|phosphatidylinositol-glycan-specific phospholipase D 20121230 -9606 2823 GPM6A - GPM6|M6A HGNC:4460|MIM:601275|Ensembl:ENSG00000150625|HPRD:03174|Vega:OTTHUMG00000160760 4 4q34 glycoprotein M6A protein-coding GPM6A glycoprotein M6A O neuronal membrane glycoprotein M6-a 20121230 -9606 2824 GPM6B - M6B HGNC:4461|MIM:300051|Ensembl:ENSG00000046653|HPRD:02082|Vega:OTTHUMG00000021162 X Xp22.2 glycoprotein M6B protein-coding GPM6B glycoprotein M6B O neuronal membrane glycoprotein M6-b|protolipid M6B 20121230 -9606 2825 GPR1 - - HGNC:4463|MIM:600239|Ensembl:ENSG00000183671|HPRD:02585|Vega:OTTHUMG00000132894 2 2q33.3 G protein-coupled receptor 1 protein-coding GPR1 G protein-coupled receptor 1 O G-protein coupled receptor 1|probable G-protein coupled receptor 1 20121230 -9606 2826 CCR10 - GPR2 HGNC:4474|MIM:600240|Ensembl:ENSG00000184451|HPRD:02586|Vega:OTTHUMG00000132301 17 17q21.1-q21.3 chemokine (C-C motif) receptor 10 protein-coding CCR10 chemokine (C-C motif) receptor 10 O C-C CKR-10|C-C chemokine receptor type 10|CC chemokine receptor 10|CC-CKR-10|CCR-10|G protein-coupled receptor 2|G-protein coupled receptor 2 20121230 -9606 2827 GPR3 - ACCA HGNC:4484|MIM:600241|Ensembl:ENSG00000181773|HPRD:02587|Vega:OTTHUMG00000003397 1 1p36.1-p35 G protein-coupled receptor 3 protein-coding GPR3 G protein-coupled receptor 3 O ACCA orphan receptor|G-protein coupled receptor 3|adenylate cyclase constitutive activator 20121230 -9606 2828 GPR4 - - HGNC:4497|MIM:600551|Ensembl:ENSG00000177464|HPRD:02773|Vega:OTTHUMG00000182126 19 19q13.3 G protein-coupled receptor 4 protein-coding GPR4 G protein-coupled receptor 4 O G-protein coupled receptor 19|G-protein coupled receptor 4 20121230 -9606 2829 XCR1 - CCXCR1|GPR5 HGNC:1625|MIM:600552|Ensembl:ENSG00000173578|HPRD:02774|Vega:OTTHUMG00000133449 3 3p21.3 chemokine (C motif) receptor 1 protein-coding XCR1 chemokine (C motif) receptor 1 O G protein-coupled receptor 5|G-protein coupled receptor 5|XC chemokine receptor 1|chemokine (C motif) XC receptor 1|chemokine XC receptor 1|lymphotactin receptor 20121230 -9606 2830 GPR6 - - HGNC:4515|MIM:600553|Ensembl:ENSG00000146360|HPRD:02775|Vega:OTTHUMG00000015354 6 6q21 G protein-coupled receptor 6 protein-coding GPR6 G protein-coupled receptor 6 O G-protein coupled receptor 6|sphingosine 1-phosphate receptor GPR6 20121230 -9606 2831 NPBWR1 - GPR7 HGNC:4522|MIM:600730|Ensembl:ENSG00000183729|HPRD:02840|Vega:OTTHUMG00000164275 8 8p22-q21.13 neuropeptides B/W receptor 1 protein-coding NPBWR1 neuropeptides B/W receptor 1 O G protein-coupled receptor 7|G-protein coupled receptor 7|neuropeptide B/W receptor 1|neuropeptides B/W receptor type 1|opioid-somatostatin-like receptor 7 20121230 -9606 2832 NPBWR2 - GPR8 HGNC:4530|MIM:600731|Ensembl:ENSG00000125522|HPRD:02841|Vega:OTTHUMG00000033032 20 20q13.3 neuropeptides B/W receptor 2 protein-coding NPBWR2 neuropeptides B/W receptor 2 O G protein-coupled receptor 8|G-protein coupled receptor 8|neuropeptides B/W receptor type 2|opioid-somatostatin-like receptor 8 20121230 -9606 2833 CXCR3 - CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR HGNC:4540|MIM:300574|Ensembl:ENSG00000186810|HPRD:02936|Vega:OTTHUMG00000033326 X Xq13 chemokine (C-X-C motif) receptor 3 protein-coding CXCR3 chemokine (C-X-C motif) receptor 3 O C-X-C chemokine receptor type 3|CXC-R3|CXCR-3|G protein-coupled receptor 9|IP-10 receptor|IP10 receptor|Mig receptor|chemokine (C-X-C) receptor 3|interferon-inducible protein 10 receptor 20121230 -9606 2834 PRLHR - GPR10|GR3|PrRPR HGNC:4464|MIM:600895|Ensembl:ENSG00000119973|HPRD:02937 10 10q26.13 prolactin releasing hormone receptor protein-coding PRLHR prolactin releasing hormone receptor O G protein-coupled receptor 10|G-protein coupled receptor 10|hGR3|prRP receptor|prolactin releasing peptide receptor|prolactin-releasing hormone receptor|prolactin-releasing peptide receptor 20121230 -9606 2835 GPR12 - GPCR12|GPCR21 HGNC:4466|MIM:600752|Ensembl:ENSG00000132975|HPRD:15978 13 13q12 G protein-coupled receptor 12 protein-coding GPR12 G protein-coupled receptor 12 O G-protein coupled receptor 12 20121230 -9606 2837 UTS2R - GPR14|UR-2-R|UTR|UTR2 HGNC:4468|MIM:600896|Ensembl:ENSG00000181408|HPRD:02938|Vega:OTTHUMG00000178835 17 17q25.3 urotensin 2 receptor protein-coding UTS2R urotensin 2 receptor O G protein-coupled receptor 14|G-protein coupled receptor 14|UR-II-R|urotensin II receptor|urotensin-2 receptor 20121230 -9606 2838 GPR15 - BOB HGNC:4469|MIM:601166|Ensembl:ENSG00000154165|HPRD:03102|Vega:OTTHUMG00000160017 3 3q11.2-q13.1 G protein-coupled receptor 15 protein-coding GPR15 G protein-coupled receptor 15 O G-protein coupled receptor 15|brother of Bonzo 20121230 -9606 2840 GPR17 - - HGNC:4471|MIM:603071|Ensembl:ENSG00000144230|HPRD:04351|Vega:OTTHUMG00000131533 2 2q21 G protein-coupled receptor 17 protein-coding GPR17 G protein-coupled receptor 17 O G-protein coupled receptor 17|P2Y-like receptor|R12|UDP/CysLT receptor|uracil nucleotide/cysteinyl leukotriene receptor 20121230 -9606 2841 GPR18 RP11-461N23.8 - HGNC:4472|MIM:602042|Ensembl:ENSG00000125245|HPRD:03621|Vega:OTTHUMG00000017266 13 13q32 G protein-coupled receptor 18 protein-coding GPR18 G protein-coupled receptor 18 O N-arachidonyl glycine receptor|NAGly receptor 20121230 -9606 2842 GPR19 - - HGNC:4473|MIM:602927|Ensembl:ENSG00000183150|HPRD:04236|Vega:OTTHUMG00000168705 12 12p12.3 G protein-coupled receptor 19 protein-coding GPR19 G protein-coupled receptor 19 O GPR-NGA|probable G-protein coupled receptor 19 20121230 -9606 2843 GPR20 - - HGNC:4475|MIM:601908|Ensembl:ENSG00000204882|HPRD:03550|Vega:OTTHUMG00000164484 8 8q24.3 G protein-coupled receptor 20 protein-coding GPR20 G protein-coupled receptor 20 O G-protein coupled receptor 20 20121230 -9606 2844 GPR21 - - HGNC:4476|MIM:601909|Ensembl:ENSG00000188394|HPRD:03551|Vega:OTTHUMG00000020631 9 9q33 G protein-coupled receptor 21 protein-coding GPR21 G protein-coupled receptor 21 O probable G-protein coupled receptor 21 20121230 -9606 2845 GPR22 tcag7.108 - HGNC:4477|MIM:601910|Ensembl:ENSG00000172209|HPRD:03552|Vega:OTTHUMG00000154902 7 7q22-q31.1 G protein-coupled receptor 22 protein-coding GPR22 G protein-coupled receptor 22 O probable G-protein coupled receptor 22 20121230 -9606 2846 LPAR4 - GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 HGNC:4478|MIM:300086|Ensembl:ENSG00000147145|HPRD:02099 X Xq21.1 lysophosphatidic acid receptor 4 protein-coding LPAR4 lysophosphatidic acid receptor 4 O G protein-coupled receptor 23|G-protein coupled receptor 23|LPA receptor 4|LPA-4|P2Y purinoceptor 9|P2Y5-like receptor|purinergic receptor 9 20121230 -9606 2847 MCHR1 CTA-229A8.4 GPR24|MCH1R|SLC1 HGNC:4479|MIM:601751|Ensembl:ENSG00000128285|HPRD:11874|Vega:OTTHUMG00000150256 22 22q13.2 melanin-concentrating hormone receptor 1 protein-coding MCHR1 melanin-concentrating hormone receptor 1 O G protein-coupled receptor 24|MCH receptor 1|MCH-1R|SLC-1|somatostatin receptor-like protein 20121230 -9606 2848 GPR25 - - HGNC:4480|MIM:602174|Ensembl:ENSG00000170128|HPRD:03707|Vega:OTTHUMG00000035788 1 1q32.1 G protein-coupled receptor 25 protein-coding GPR25 G protein-coupled receptor 25 O probable G-protein coupled receptor 25 20121230 -9606 2849 GPR26 - - HGNC:4481|MIM:604847|Ensembl:ENSG00000154478|HPRD:07275|Vega:OTTHUMG00000019204 10 10q26.13 G protein-coupled receptor 26 protein-coding GPR26 G protein-coupled receptor 26 O G-protein coupled receptor 26 20121230 -9606 2850 GPR27 - SREB1 HGNC:4482|MIM:605187|Ensembl:ENSG00000170837|HPRD:05542|Vega:OTTHUMG00000158810 3 3p21-p14 G protein-coupled receptor 27 protein-coding GPR27 G protein-coupled receptor 27 O probable G-protein coupled receptor 27|super conserved receptor expressed in brain 1 20121230 -9606 2852 GPER - CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPR30|LERGU|LERGU2|LyGPR HGNC:4485|MIM:601805|Ensembl:ENSG00000164850|HPRD:03484|Vega:OTTHUMG00000023680 7 7p22.3 G protein-coupled estrogen receptor 1 protein-coding GPER G protein-coupled estrogen receptor 1 O G protein-coupled receptor 30|G-protein coupled estrogen receptor 1|G-protein coupled receptor 30|IL8-related receptor DRY12|chemoattractant receptor-like 2|chemokine receptor-like 2|constitutively expressed peptide-like receptor|flow-induced endothelial G-protein coupled receptor 1|heptahelix receptor|leucine rich protein in GPR30 3'UTR|lymphocyte-derived G-protein coupled receptor|mER|membrane estrogen receptor 20121230 -9606 2853 GPR31 - 12-HETER|HETER|HETER1 HGNC:4486|MIM:602043|Ensembl:ENSG00000120436|HPRD:03622|Vega:OTTHUMG00000016013 6 6q27 G protein-coupled receptor 31 protein-coding GPR31 G protein-coupled receptor 31 O 12-(S)-HETE acid receptor|12-(S)-HETE receptor|12-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid (HETE) receptor|12-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid receptor|G-protein coupled receptor 31|bA517H2.2 (G protein-coupled receptor 31)|hydroxyeicosatetraenoic (HETE) acid receptor 1|probable G-protein coupled receptor 31 20121230 -9606 2854 GPR32 - RVDR1 HGNC:4487|MIM:603195|Ensembl:ENSG00000142511|HPRD:04430 19 19q13.33 G protein-coupled receptor 32 protein-coding GPR32 G protein-coupled receptor 32 O probable G-protein coupled receptor 32|resolvin D1 receptor 20121230 -9606 2855 GPR32P1 - GPR32P HGNC:4488 19 19q13.33 G protein-coupled receptor 32, pseudogene 1 pseudo GPR32P1 G protein-coupled receptor 32, pseudogene 1 O - 20121230 -9606 2856 GPR33 - - HGNC:4489|MIM:610118 14 14q12 G protein-coupled receptor 33 (gene/pseudogene) protein-coding GPR33 G protein-coupled receptor 33 (gene/pseudogene) O G protein-coupled receptor 33 pseudogene|probable G-protein coupled receptor 33 20121230 -9606 2857 GPR34 RP11-204C16.6 - HGNC:4490|MIM:300241|Ensembl:ENSG00000171659|HPRD:02213|Vega:OTTHUMG00000021375 X Xp11.4 G protein-coupled receptor 34 protein-coding GPR34 G protein-coupled receptor 34 O probable G-protein coupled receptor 34 20121230 -9606 2859 GPR35 - - HGNC:4492|MIM:602646|Ensembl:ENSG00000178623|HPRD:16003|Vega:OTTHUMG00000133356 2 2q37.3 G protein-coupled receptor 35 protein-coding GPR35 G protein-coupled receptor 35 O G-protein coupled receptor 35|KYNA receptor|kynurenic acid receptor 20121230 -9606 2860 GPR36 - - HGNC:4493 - - G protein-coupled receptor 36 protein-coding GPR36 G protein-coupled receptor 36 O - 20080828 -9606 2861 GPR37 - EDNRBL|PAELR|hET(B)R-LP HGNC:4494|MIM:602583|Ensembl:ENSG00000170775|HPRD:03992|Vega:OTTHUMG00000157197 7 7q31 G protein-coupled receptor 37 (endothelin receptor type B-like) protein-coding GPR37 G protein-coupled receptor 37 (endothelin receptor type B-like) O ETBR-LP-1|Parkin-associated endothelin receptor-like receptor|endothelin B receptor-like protein 1|probable G-protein coupled receptor 37 20121230 -9606 2862 MLNR - GPR38|MTLR1 HGNC:4495|MIM:602885|Ensembl:ENSG00000102539|HPRD:04197|Vega:OTTHUMG00000016909 13 13q14-q21 motilin receptor protein-coding MLNR motilin receptor O G protein-coupled receptor 38 20121230 -9606 2863 GPR39 - - HGNC:4496|MIM:602886|Ensembl:ENSG00000183840|HPRD:04198|Vega:OTTHUMG00000131679 2 2q21-q22 G protein-coupled receptor 39 protein-coding GPR39 G protein-coupled receptor 39 O G-protein coupled receptor 39 20121230 -9606 2864 FFAR1 - FFA1R|GPCR40|GPR40 HGNC:4498|MIM:603820|Ensembl:ENSG00000126266|HPRD:04822 19 19q13.1 free fatty acid receptor 1 protein-coding FFAR1 free fatty acid receptor 1 O G protein-coupled receptor 40|G-protein coupled receptor 40 20121230 -9606 2865 FFAR3 - FFA3R|GPR41 HGNC:4499|MIM:603821|Ensembl:ENSG00000185897|HPRD:04823|Vega:OTTHUMG00000172514 19 19q13.1 free fatty acid receptor 3 protein-coding FFAR3 free fatty acid receptor 3 O G protein-coupled receptor 41|G-protein coupled receptor 41 20121230 -9606 2866 GPR42 - FFAR1L|FFAR3L|GPR41L|GPR42P HGNC:4500|MIM:603822|HPRD:16033 19 19q13.1 G protein-coupled receptor 42 (gene/pseudogene) pseudo GPR42 G protein-coupled receptor 42 (gene/pseudogene) O - 20121209 -9606 2867 FFAR2 - FFA2R|GPR43 HGNC:4501|MIM:603823|Ensembl:ENSG00000126262|HPRD:04824 19 19q13.1 free fatty acid receptor 2 protein-coding FFAR2 free fatty acid receptor 2 O G protein-coupled receptor 43|G-protein coupled receptor 43|free fatty acid activated receptor 2 20121230 -9606 2868 GRK4 - GPRK2L|GPRK4|GRK4a|IT11 HGNC:4543|MIM:137026|Ensembl:ENSG00000125388|HPRD:00656|Vega:OTTHUMG00000159914 4 4p16.3 G protein-coupled receptor kinase 4 protein-coding GRK4 G protein-coupled receptor kinase 4 O ITI1 20121230 -9606 2869 GRK5 RP11-714M16.1 GPRK5 HGNC:4544|MIM:600870|Ensembl:ENSG00000198873|HPRD:02926|Vega:OTTHUMG00000019149 10 10q26.11 G protein-coupled receptor kinase 5 protein-coding GRK5 G protein-coupled receptor kinase 5 O FP2025|g protein-coupled receptor kinase GRK5 20121230 -9606 2870 GRK6 - GPRK6 HGNC:4545|MIM:600869|Ensembl:ENSG00000198055|HPRD:02925|Vega:OTTHUMG00000163401 5 5q35 G protein-coupled receptor kinase 6 protein-coding GRK6 G protein-coupled receptor kinase 6 O - 20121230 -9606 2871 GRK6P1 - GPRK6L|GPRK6P|GRK6PS HGNC:4547 13 13q12.11 G protein-coupled receptor kinase 6 pseudogene 1 pseudo GRK6P1 G protein-coupled receptor kinase 6 pseudogene 1 O - 20121230 -9606 2872 MKNK2 - GPRK7|MNK2 HGNC:7111|MIM:605069|Ensembl:ENSG00000099875|HPRD:05459|Vega:OTTHUMG00000180020 19 19p13.3 MAP kinase interacting serine/threonine kinase 2 protein-coding MKNK2 MAP kinase interacting serine/threonine kinase 2 O G protein-coupled receptor kinase 7|MAP kinase signal-integrating kinase 2|MAP kinase-interacting serine/threonine-protein kinase 2|MAPK signal-integrating kinase 2 20121230 -9606 2873 GPS1 - COPS1|CSN1 HGNC:4549|MIM:601934|Ensembl:ENSG00000169727|HPRD:15991|Vega:OTTHUMG00000178484 17 17q25.3 G protein pathway suppressor 1 protein-coding GPS1 G protein pathway suppressor 1 O COP9 signalosome complex subunit 1|GPS-1|JAB1-containing signalosome subunit 1|SGN1|signalosome subunit 1 20121230 -9606 2874 GPS2 - AMF-1 HGNC:4550|MIM:601935|Ensembl:ENSG00000132522|HPRD:11878|Vega:OTTHUMG00000102198 17 17p13 G protein pathway suppressor 2 protein-coding GPS2 G protein pathway suppressor 2 O GPS-2 20121230 -9606 2875 GPT - AAT1|ALT1|GPT1 HGNC:4552|MIM:138200|Ensembl:ENSG00000167701|HPRD:00689|Vega:OTTHUMG00000165176 8 8q24.3 glutamic-pyruvate transaminase (alanine aminotransferase) protein-coding GPT glutamic-pyruvate transaminase (alanine aminotransferase) O GPT 1|alanine aminotransferase 1|glutamate pyruvate transaminase 1|glutamic--alanine transaminase 1|glutamic--pyruvic transaminase 1|glutamic-alanine transaminase 1 20121230 -9606 2876 GPX1 - GPXD|GSHPX1 HGNC:4553|MIM:138320|Ensembl:ENSG00000233276|HPRD:11749|Vega:OTTHUMG00000156837 3 3p21.3 glutathione peroxidase 1 protein-coding GPX1 glutathione peroxidase 1 O GPx-1|GSHPx-1|cellular glutathione peroxidase 20121230 -9606 2877 GPX2 - GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 HGNC:4554|MIM:138319|Ensembl:ENSG00000176153|HPRD:11818|Vega:OTTHUMG00000171677 14 14q24.1 glutathione peroxidase 2 (gastrointestinal) protein-coding GPX2 glutathione peroxidase 2 (gastrointestinal) O gastrointestinal glutathione peroxidase|glutathione peroxidase 2|glutathione peroxidase-related protein 2 20121230 -9606 2878 GPX3 - GPx-P|GSHPx-3|GSHPx-P HGNC:4555|MIM:138321|Ensembl:ENSG00000211445|HPRD:11750|Vega:OTTHUMG00000163693 5 5q23 glutathione peroxidase 3 (plasma) protein-coding GPX3 glutathione peroxidase 3 (plasma) O GPx-3|extracellular glutathione peroxidase|glutathione peroxidase 3|plasma glutathione peroxidase 20121230 -9606 2879 GPX4 - GPx-4|GSHPx-4|MCSP|PHGPx|snGPx|snPHGPx HGNC:4556|MIM:138322|Ensembl:ENSG00000167468|HPRD:11819|Vega:OTTHUMG00000181874 19 19p13.3 glutathione peroxidase 4 protein-coding GPX4 glutathione peroxidase 4 O phospholipid hydroperoxidase|phospholipid hydroperoxide glutathione peroxidase, mitochondrial|sperm nucleus glutathione peroxidase 20121230 -9606 2880 GPX5 - - HGNC:4557|MIM:603435|Ensembl:ENSG00000224586|HPRD:11941|Vega:OTTHUMG00000016307 6 6p22.1 glutathione peroxidase 5 (epididymal androgen-related protein) protein-coding GPX5 glutathione peroxidase 5 (epididymal androgen-related protein) O EGLP|GPx-5|GSHPx-5|epididymal androgen-related protein|epididymal secretory glutathione peroxidase|epididymis-specific glutathione peroxidase-like protein 20121230 -9606 2882 GPX7 UNQ469/PRO828 CL683|GPX6|GPx-7|GSHPx-7|NPGPx HGNC:4559|Ensembl:ENSG00000116157|HPRD:13606|Vega:OTTHUMG00000008322 1 1p32 glutathione peroxidase 7 protein-coding GPX7 glutathione peroxidase 7 O glutathione peroxidase 6|non-selenocysteine containing phospholipid hydroperoxide glutathione peroxidase 20121230 -9606 2884 GPX1P2 - GPXL1|GPXL2|GPXP2|GPXP2P HGNC:4561 21 21q21.3 glutathione peroxidase pseudogene 2 pseudo GPX1P2 glutathione peroxidase pseudogene 2 O - 20121230 -9606 2885 GRB2 - ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 HGNC:4566|MIM:108355|Ensembl:ENSG00000177885|HPRD:00150|Vega:OTTHUMG00000134332 17 17q24-q25 growth factor receptor-bound protein 2 protein-coding GRB2 growth factor receptor-bound protein 2 O HT027|SH2/SH3 adapter GRB2|abundant SRC homology|epidermal growth factor receptor-binding protein GRB2|growth factor receptor-bound protein 3|protein Ash 20121230 -9606 2886 GRB7 - - HGNC:4567|MIM:601522|Ensembl:ENSG00000141738|HPRD:03311|Vega:OTTHUMG00000133253 17 17q12 growth factor receptor-bound protein 7 protein-coding GRB7 growth factor receptor-bound protein 7 O B47|GRB7 adapter protein|epidermal growth factor receptor GRB-7 20121230 -9606 2887 GRB10 - GRB-IR|Grb-10|IRBP|MEG1|RSS HGNC:4564|MIM:601523|Ensembl:ENSG00000106070|HPRD:03312|Vega:OTTHUMG00000150622 7 7p12.2 growth factor receptor-bound protein 10 protein-coding GRB10 growth factor receptor-bound protein 10 O GRB10 adapter protein|GRB10 adaptor protein|insulin receptor-binding protein Grb-IR|maternally expressed gene 1 20121230 -9606 2888 GRB14 - - HGNC:4565|MIM:601524|Ensembl:ENSG00000115290|HPRD:03313|Vega:OTTHUMG00000132135 2 2q22-q24 growth factor receptor-bound protein 14 protein-coding GRB14 growth factor receptor-bound protein 14 O GRB14 adapter protein 20121230 -9606 2889 RAPGEF1 RP11-40A7.1 C3G|GRF2 HGNC:4568|MIM:600303|Ensembl:ENSG00000107263|HPRD:02627|Vega:OTTHUMG00000020829 9 9q34.3 Rap guanine nucleotide exchange factor (GEF) 1 protein-coding RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1 O CRK SH3-binding GNRP|guanine nucleotide-releasing factor 2 (specific for crk proto-oncogene)|rap guanine nucleotide exchange factor 1 20121230 -9606 2890 GRIA1 - GLUH1|GLUR1|GLURA|GluA1|HBGR1 HGNC:4571|MIM:138248|Ensembl:ENSG00000155511|HPRD:00695|Vega:OTTHUMG00000130148 5 5q31.1 glutamate receptor, ionotropic, AMPA 1 protein-coding GRIA1 glutamate receptor, ionotropic, AMPA 1 O AMPA 1|AMPA-selective glutamate receptor 1|gluR-1|gluR-A|gluR-K1|glutamate receptor 1 20121230 -9606 2891 GRIA2 - GLUR2|GLURB|GluA2|GluR-K2|HBGR2 HGNC:4572|MIM:138247|Ensembl:ENSG00000120251|HPRD:04726|Vega:OTTHUMG00000133836 4 4q32.1 glutamate receptor, ionotropic, AMPA 2 protein-coding GRIA2 glutamate receptor, ionotropic, AMPA 2 O AMPA-selective glutamate receptor 2|gluR-2|gluR-B|glutamate receptor 2 20121230 -9606 2892 GRIA3 RP11-349N19.3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 HGNC:4573|MIM:305915|Ensembl:ENSG00000125675|HPRD:02378|Vega:OTTHUMG00000022685 X Xq25 glutamate receptor, ionotropic, AMPA 3 protein-coding GRIA3 glutamate receptor, ionotropic, AMPA 3 O AMPA-selective glutamate receptor 3|dJ1171F9.1|gluR-3|glutamate receptor 3|glutamate receptor C|glutamate receptor subunit 3|glutamate receptor, ionotrophic, AMPA 3 20121230 -9606 2893 GRIA4 - GLUR4|GLUR4C|GLURD|GluA4 HGNC:4574|MIM:138246|Ensembl:ENSG00000152578|HPRD:00694|Vega:OTTHUMG00000166236 11 11q22 glutamate receptor, ionotropic, AMPA 4 protein-coding GRIA4 glutamate receptor, ionotropic, AMPA 4 O AMPA-selective glutamate receptor 4|gluR-4|gluR-D|glutamate receptor 4|glutamate receptor, ionotrophic, AMPA 4 20121230 -9606 2894 GRID1 RP11-93H12.1 GluD1 HGNC:4575|MIM:610659|Ensembl:ENSG00000182771|HPRD:17078|Vega:OTTHUMG00000018650 10 10q22 glutamate receptor, ionotropic, delta 1 protein-coding GRID1 glutamate receptor, ionotropic, delta 1 O gluR delta-1 subunit|glutamate receptor delta-1 subunit 20121230 -9606 2895 GRID2 - GluD2 HGNC:4576|MIM:602368|Ensembl:ENSG00000152208|HPRD:06781|Vega:OTTHUMG00000130975 4 4q22 glutamate receptor, ionotropic, delta 2 protein-coding GRID2 glutamate receptor, ionotropic, delta 2 O GluR-delta-2|gluR delta-2 subunit|glutamate receptor delta-2 subunit 20121230 -9606 2896 GRN - CLN11|GEP|GP88|PCDGF|PEPI|PGRN HGNC:4601|MIM:138945|Ensembl:ENSG00000030582|HPRD:00733|Vega:OTTHUMG00000181816 17 17q21.32 granulin protein-coding GRN granulin O PC cell-derived growth factor|acrogranin|granulin-epithelin|granulins|proepithelin|progranulin 20121230 -9606 2897 GRIK1 - EAA3|EEA3|GLR5|GLUR5|GluK1 HGNC:4579|MIM:138245|Ensembl:ENSG00000171189|HPRD:00693|Vega:OTTHUMG00000078879 21 21q22.11 glutamate receptor, ionotropic, kainate 1 protein-coding GRIK1 glutamate receptor, ionotropic, kainate 1 O excitatory amino acid receptor 3|gluR-5|glutamate receptor 5|glutamate receptor, ionotropic kainate 1 20121230 -9606 2898 GRIK2 - EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 HGNC:4580|MIM:138244|Ensembl:ENSG00000164418|HPRD:00692|Vega:OTTHUMG00000016328 6 6q16.3 glutamate receptor, ionotropic, kainate 2 protein-coding GRIK2 glutamate receptor, ionotropic, kainate 2 O bA487F5.1|excitatory amino acid receptor 4|gluR-6|glutamate receptor 6|glutamate receptor form A|glutamate receptor form B|glutamate receptor form C|glutamate receptor form D|glutamate receptor form E|glutamate receptor, ionotropic kainate 2 20121230 -9606 2899 GRIK3 - EAA5|GLR7|GLUR7|GluK3|GluR7a HGNC:4581|MIM:138243|Ensembl:ENSG00000163873|HPRD:00691|Vega:OTTHUMG00000004189 1 1p34.3 glutamate receptor, ionotropic, kainate 3 protein-coding GRIK3 glutamate receptor, ionotropic, kainate 3 O dJ1090M5.1 (glutamate receptor, ionotropic, kainate 3 (GLUR7))|excitatory amino acid receptor 5|gluR-7|glutamate receptor 7|glutamate receptor, ionotropic kainate 3 20121230 -9606 2900 GRIK4 - EAA1|GRIK|GluK4|KA1 HGNC:4582|MIM:600282|Ensembl:ENSG00000149403|HPRD:02613|Vega:OTTHUMG00000048255 11 11q22.3 glutamate receptor, ionotropic, kainate 4 protein-coding GRIK4 glutamate receptor, ionotropic, kainate 4 O excitatory amino acid receptor 1|glutamate receptor KA-1|glutamate receptor KA1|glutamate receptor, ionotropic kainate 4 20121230 -9606 2901 GRIK5 - EAA2|GRIK2|GluK5|KA2 HGNC:4583|MIM:600283|Ensembl:ENSG00000105737|HPRD:02614 19 19q13.2 glutamate receptor, ionotropic, kainate 5 protein-coding GRIK5 glutamate receptor, ionotropic, kainate 5 O excitatory amino acid receptor 2|glutamate receptor KA-2|glutamate receptor KA2|glutamate receptor, ionotropic kainate 5 20121230 -9606 2902 GRIN1 RP11-350O14.1 GluN1|MRD8|NMDA1|NMDAR1|NR1 HGNC:4584|MIM:138249|Ensembl:ENSG00000176884|HPRD:15926|Vega:OTTHUMG00000020976 9 9q34.3 glutamate receptor, ionotropic, N-methyl D-aspartate 1 protein-coding GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 O N-methyl-D-aspartate receptor channel, subunit zeta-1|N-methyl-D-aspartate receptor subunit NR1|NMD-R1|glutamate [NMDA] receptor subunit zeta 1|glutamate [NMDA] receptor subunit zeta-1 20121230 -9606 2903 GRIN2A - EPND|GluN2A|NMDAR2A|NR2A HGNC:4585|MIM:138253|Ensembl:ENSG00000183454|HPRD:00698|Vega:OTTHUMG00000129721 16 16p13.2 glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A O N-methyl D-aspartate receptor subtype 2A|N-methyl-D-aspartate receptor channel, subunit epsilon-1|N-methyl-D-aspartate receptor subunit 2A|NMDA receptor subtype 2A|glutamate [NMDA] receptor subunit epsilon-1|hNR2A 20121230 -9606 2904 GRIN2B - GluN2B|MRD6|NMDAR2B|NR2B|hNR3 HGNC:4586|MIM:138252|Ensembl:ENSG00000150086|HPRD:00697|Vega:OTTHUMG00000137373 12 12p12 glutamate receptor, ionotropic, N-methyl D-aspartate 2B protein-coding GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B O N-methyl D-aspartate receptor subtype 2B|N-methyl-D-aspartate receptor subunit 3|NR3|glutamate [NMDA] receptor subunit epsilon-2|glutamate receptor subunit epsilon-2 20121230 -9606 2905 GRIN2C - GluN2C|NMDAR2C|NR2C HGNC:4587|MIM:138254|Ensembl:ENSG00000161509|HPRD:00699|Vega:OTTHUMG00000044524 17 17q25 glutamate receptor, ionotropic, N-methyl D-aspartate 2C protein-coding GRIN2C glutamate receptor, ionotropic, N-methyl D-aspartate 2C O N-methyl D-aspartate receptor subtype 2C|N-methyl-D-aspartate receptor subunit 2C|glutamate [NMDA] receptor subunit epsilon-3 20121230 -9606 2906 GRIN2D - EB11|GluN2D|NMDAR2D|NR2D HGNC:4588|MIM:602717|Ensembl:ENSG00000105464|HPRD:04095 19 19q13.33 glutamate receptor, ionotropic, N-methyl D-aspartate 2D protein-coding GRIN2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D O N-methyl D-aspartate receptor subtype 2D|N-methyl-d-aspartate receptor subunit 2D|estrogen receptor binding CpG island|glutamate [NMDA] receptor subunit epsilon-4 20121230 -9606 2907 GRINA - HNRGW|LFG1|NMDARA1|TMBIM3 HGNC:4589|MIM:138251|Ensembl:ENSG00000178719|HPRD:15927|Vega:OTTHUMG00000165433 8 8q24.3 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) protein-coding GRINA glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) O NMDA receptor glutamate-binding subunit|glutamate [NMDA] receptor-associated protein 1|glutamate receptor, NMDA subtype, glutamate-binding subunit|protein lifeguard 1|putative MAPK-activating protein PM02|transmembrane BAX inhibitor motif containing 3|transmembrane BAX inhibitor motif-containing protein 3 20121230 -9606 2908 NR3C1 - GCCR|GCR|GR|GRL HGNC:7978|MIM:138040|Ensembl:ENSG00000113580|HPRD:00679|Vega:OTTHUMG00000129677 5 5q31.3 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) O glucocorticoid nuclear receptor variant 1|glucocorticoid receptor 20121230 -9606 2909 ARHGAP35 - GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP HGNC:4591|MIM:605277|Ensembl:ENSG00000160007|HPRD:05592 19 19q13.3 Rho GTPase activating protein 35 protein-coding ARHGAP35 Rho GTPase activating protein 35 O glucocorticoid receptor DNA binding factor 1|glucocorticoid receptor DNA-binding factor 1|glucocorticoid receptor repression factor 1|rho GAP p190A|rho GTPase-activating protein 35 20121230 -9606 2910 NR3C1P1 - GCR2|GCRL|GRLL1|NR3C1P HGNC:4592|MIM:138060 16 16q24.2 nuclear receptor subfamily 3, group C, member 1 pseudogene 1 pseudo NR3C1P1 nuclear receptor subfamily 3, group C, member 1 pseudogene 1 O - 20121230 -9606 2911 GRM1 - GPRC1A|GRM1A|MGLUR1|MGLUR1A|SCAR13|mGlu1 HGNC:4593|MIM:604473|Ensembl:ENSG00000152822|HPRD:05129|Vega:OTTHUMG00000015752 6 6q24 glutamate receptor, metabotropic 1 protein-coding GRM1 glutamate receptor, metabotropic 1 O metabotropic glutamate receptor 1 20121230 -9606 2912 GRM2 - GLUR2|GPRC1B|MGLUR2|mGlu2 HGNC:4594|MIM:604099|Ensembl:ENSG00000164082|HPRD:04977|Vega:OTTHUMG00000156902 3 3p21.2 glutamate receptor, metabotropic 2 protein-coding GRM2 glutamate receptor, metabotropic 2 O glutamate metabotropic receptor 2|glutamate receptor homolog|metabotropic glutamate receptor 2 20121230 -9606 2913 GRM3 - GLUR3|GPRC1C|MGLUR3|mGlu3 HGNC:4595|MIM:601115|Ensembl:ENSG00000198822|HPRD:03070|Vega:OTTHUMG00000022884 7 7q21.1-q21.2 glutamate receptor, metabotropic 3 protein-coding GRM3 glutamate receptor, metabotropic 3 O glutamate metabotropic receptor 3|metabotropic glutamate receptor 3 20121230 -9606 2914 GRM4 - GPRC1D|MGLUR4|mGlu4 HGNC:4596|MIM:604100|Ensembl:ENSG00000124493|HPRD:04978|Vega:OTTHUMG00000014538 6 6p21.3 glutamate receptor, metabotropic 4 protein-coding GRM4 glutamate receptor, metabotropic 4 O metabotropic glutamate receptor 4 20121230 -9606 2915 GRM5 - GPRC1E|MGLUR5|mGlu5 HGNC:4597|MIM:604102|Ensembl:ENSG00000168959|Vega:OTTHUMG00000134306 11 11q14.3 glutamate receptor, metabotropic 5 protein-coding GRM5 glutamate receptor, metabotropic 5 O metabotropic glutamate receptor 5|metabotropic glutamate receptor 5 variant F|metabotropic glutamate receptor 5 variant G|metabotropic glutamate receptor 5 variant H 20121230 -9606 2916 GRM6 - CSNB1B|GPRC1F|MGLUR6|mGlu6 HGNC:4598|MIM:604096|Ensembl:ENSG00000113262|HPRD:04975|Vega:OTTHUMG00000130889 5 5q35 glutamate receptor, metabotropic 6 protein-coding GRM6 glutamate receptor, metabotropic 6 O metabotropic glutamate receptor 6 20121230 -9606 2917 GRM7 - GLUR7|GPRC1G|MGLU7|MGLUR7 HGNC:4599|MIM:604101|Ensembl:ENSG00000196277|HPRD:04979|Vega:OTTHUMG00000125549 3 3p26.1-p25.1 glutamate receptor, metabotropic 7 protein-coding GRM7 glutamate receptor, metabotropic 7 O metabotropic glutamate receptor 7 20121230 -9606 2918 GRM8 - GLUR8|GPRC1H|MGLUR8|mGlu8 HGNC:4600|MIM:601116|Ensembl:ENSG00000179603|HPRD:03071|Vega:OTTHUMG00000022888 7 7q31.3-q32.1 glutamate receptor, metabotropic 8 protein-coding GRM8 glutamate receptor, metabotropic 8 O metabotropic glutamate receptor 8 20121230 -9606 2919 CXCL1 - FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 HGNC:4602|MIM:155730|Ensembl:ENSG00000163739|HPRD:01119|Vega:OTTHUMG00000160866 4 4q21 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) protein-coding CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) O C-X-C motif chemokine 1|GRO-alpha(1-73)|GRO1 oncogene (melanoma growth stimulating activity, alpha)|GRO1 oncogene (melanoma growth-stimulating activity)|MGSA alpha|fibroblast secretory protein|growth-regulated alpha protein|melanoma growth stimulatory activity alpha|neutrophil-activating protein 3 20121230 -9606 2920 CXCL2 - CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 HGNC:4603|MIM:139110|Ensembl:ENSG00000081041|HPRD:00741|Vega:OTTHUMG00000160865 4 4q21 chemokine (C-X-C motif) ligand 2 protein-coding CXCL2 chemokine (C-X-C motif) ligand 2 O C-X-C motif chemokine 2|GRO2 oncogene|MGSA beta|MIP2-alpha|gro-beta|growth-regulated protein beta|macrophage inflammatory protein 2-alpha|melanoma growth stimulatory activity beta 20121230 -9606 2921 CXCL3 - CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 HGNC:4604|MIM:139111|Ensembl:ENSG00000163734|HPRD:00742|Vega:OTTHUMG00000160861 4 4q21 chemokine (C-X-C motif) ligand 3 protein-coding CXCL3 chemokine (C-X-C motif) ligand 3 O C-X-C motif chemokine 3|GRO-gamma|GRO-gamma(1-73)|GRO3 oncogene|MGSA gamma|MIP2-beta|growth-regulated protein gamma|macrophage inflammatory protein 2-beta|melanoma growth stimulatory activity gamma 20121230 -9606 2922 GRP - BN|GRP-10|preproGRP|proGRP HGNC:4605|MIM:137260|Ensembl:ENSG00000134443|HPRD:08845|Vega:OTTHUMG00000132760 18 18q21.1-q21.32 gastrin-releasing peptide protein-coding GRP gastrin-releasing peptide O bombesin|neuromedin C|pre-progastrin releasing peptide 20121230 -9606 2923 PDIA3 - ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HsT17083|P58|PI-PLC HGNC:4606|MIM:602046|Ensembl:ENSG00000167004|HPRD:03625|Vega:OTTHUMG00000044444 15 15q15 protein disulfide isomerase family A, member 3 protein-coding PDIA3 protein disulfide isomerase family A, member 3 O 58 kDa glucose-regulated protein|58 kDa microsomal protein|ER protein 57|ER protein 60|disulfide isomerase ER-60|endoplasmic reticulum P58|endoplasmic reticulum resident protein 57|endoplasmic reticulum resident protein 60|glucose regulated protein, 58kDa|phospholipase C-alpha|protein disulfide isomerase-associated 3|protein disulfide-isomerase A3 20121230 -9606 2925 GRPR - - HGNC:4609|MIM:305670|Ensembl:ENSG00000126010|HPRD:02376|Vega:OTTHUMG00000021189 X Xp22.2 gastrin-releasing peptide receptor protein-coding GRPR gastrin-releasing peptide receptor O GRP-R|GRP-preferring bombesin receptor 20121230 -9606 2926 GRSF1 - - HGNC:4610|MIM:604851|Ensembl:ENSG00000132463|HPRD:07276|Vega:OTTHUMG00000160846 4 4q13 G-rich RNA sequence binding factor 1 protein-coding GRSF1 G-rich RNA sequence binding factor 1 O G-rich sequence factor 1|GRSF-1 20121230 -9606 2928 GSC2 - GSCL HGNC:4613|MIM:601845|Ensembl:ENSG00000063515|HPRD:03506|Vega:OTTHUMG00000150122 22 22q11.21 goosecoid homeobox 2 protein-coding GSC2 goosecoid homeobox 2 O GSC-2|GSC-L|homeobox protein goosecoid-2 20121230 -9606 2931 GSK3A - - HGNC:4616|MIM:606784|Ensembl:ENSG00000105723|HPRD:06002|Vega:OTTHUMG00000150722 19 19q13.2 glycogen synthase kinase 3 alpha protein-coding GSK3A glycogen synthase kinase 3 alpha O GSK-3 alpha|glycogen synthase kinase-3 alpha|serine/threonine-protein kinase GSK3A 20121230 -9606 2932 GSK3B - - HGNC:4617|MIM:605004|Ensembl:ENSG00000082701|HPRD:05418|Vega:OTTHUMG00000133765 3 3q13.3 glycogen synthase kinase 3 beta protein-coding GSK3B glycogen synthase kinase 3 beta O GSK-3 beta|GSK3beta isoform|glycogen synthase kinase-3 beta|serine/threonine-protein kinase GSK3B 20121230 -9606 2933 GSM1 - GSP HGNC:4619|MIM:190100 9 9q13-q21 geniospasm 1 unknown GSM1 geniospasm 1 O - 20120622 -9606 2934 GSN RP11-477J21.1 ADF|AGEL HGNC:4620|MIM:137350|Ensembl:ENSG00000148180|HPRD:00674|Vega:OTTHUMG00000020584 9 9q33 gelsolin protein-coding GSN gelsolin O actin-depolymerizing factor|brevin 20121230 -9606 2935 GSPT1 - 551G9.2|ETF3A|GST1|eRF3a HGNC:4621|MIM:139259|Ensembl:ENSG00000103342|HPRD:00753|Vega:OTTHUMG00000172956 16 16p13.1 G1 to S phase transition 1 protein-coding GSPT1 G1 to S phase transition 1 O G1 to S phase transition protein 1 homolog|eukaryotic peptide chain release factor GTP-binding subunit ERF3A|eukaryotic peptide chain release factor subunit 3a 20121230 -9606 2936 GSR - - HGNC:4623|MIM:138300|Ensembl:ENSG00000104687|HPRD:00704|Vega:OTTHUMG00000163946 8 8p21.1 glutathione reductase protein-coding GSR glutathione reductase O GR|GRase|glutathione reductase, mitochondrial 20121230 -9606 2937 GSS - GSHS HGNC:4624|MIM:601002|Ensembl:ENSG00000100983|HPRD:03000|Vega:OTTHUMG00000032315 20 20q11.2 glutathione synthetase protein-coding GSS glutathione synthetase O GSH synthetase|GSH-S|glutathione synthase 20121230 -9606 2938 GSTA1 RP11-392A23.1 GST2|GSTA1-1|GTH1 HGNC:4626|MIM:138359|Ensembl:ENSG00000243955|HPRD:00708|Vega:OTTHUMG00000014861 6 6p12.1 glutathione S-transferase alpha 1 protein-coding GSTA1 glutathione S-transferase alpha 1 O GST HA subunit 1|GST class-alpha member 1|GST, class alpha, 1|GST-epsilon|S-(hydroxyalkyl)glutathione lyase A1|glutathione S-alkyltransferase A1|glutathione S-aryltransferase A1|glutathione S-transferase 2|glutathione S-transferase A1|glutathione S-transferase Ha subunit 1 20121230 -9606 2939 GSTA2 - GST2|GSTA2-2|GTA2|GTH2 HGNC:4627|MIM:138360|Ensembl:ENSG00000244067|HPRD:00709|Vega:OTTHUMG00000016263 6 6p12.1 glutathione S-transferase alpha 2 protein-coding GSTA2 glutathione S-transferase alpha 2 O GST HA subunit 2|GST class-alpha member 2|GST-gamma|S-(hydroxyalkyl)glutathione lyase A2|glutathione S-alkyltransferase A2|glutathione S-aralkyltransferase A2|glutathione S-aryltransferase A2|glutathione S-transferase A2|liver GST2 20121230 -9606 2940 GSTA3 RP1-214M20.2 GSTA3-3|GTA3 HGNC:4628|MIM:605449|Ensembl:ENSG00000174156|HPRD:07290|Vega:OTTHUMG00000014865 6 6p12.1 glutathione S-transferase alpha 3 protein-coding GSTA3 glutathione S-transferase alpha 3 O GST class-alpha member 3|S-(hydroxyalkyl)glutathione lyase A3|glutathione S-alkyltransferase A3|glutathione S-aralkyltransferase A3|glutathione S-aryltransferase A3|glutathione S-transferase A3|glutathione S-transferase A3-3 20121230 -9606 2941 GSTA4 RP1-214M20.1 GSTA4-4|GTA4 HGNC:4629|MIM:605450|Ensembl:ENSG00000170899|HPRD:06899|Vega:OTTHUMG00000014868 6 6p12.1 glutathione S-transferase alpha 4 protein-coding GSTA4 glutathione S-transferase alpha 4 O GST class-alpha member 4|S-(hydroxyalkyl)glutathione lyase A4|glutathione S-alkyltransferase A4|glutathione S-aralkyltransferase A4|glutathione S-aryltransferase A4|glutathione S-transferase A4|glutathione S-transferase A4-4|glutathione transferase A4-4 20121230 -9606 2942 GSTA6P - GSTAP1 HGNC:4630 6 6p12.2 glutathione S-transferase alpha 6, pseudogene pseudo GSTA6P glutathione S-transferase alpha 6, pseudogene O - 20121230 -9606 2944 GSTM1 - GST1|GSTM1-1|GSTM1a-1a|GSTM1b-1b|GTH4|GTM1|H-B|MU|MU-1 HGNC:4632|MIM:138350|Ensembl:ENSG00000134184|HPRD:00707|Vega:OTTHUMG00000011635 1 1p13.3 glutathione S-transferase mu 1 protein-coding GSTM1 glutathione S-transferase mu 1 O GST HB subunit 4|GST class-mu 1|HB subunit 4|S-(hydroxyalkyl)glutathione lyase|glutathione S-alkyltransferase|glutathione S-aralkyltransferase|glutathione S-aryltransferase|glutathione S-transferase M1|glutathione S-transferase Mu 1 20121230 -9606 2945 GSTM5P1 - GST1L|GSTM1L HGNC:4633 3 3p25.2 glutathione S-transferase mu 5 pseudogene 1 pseudo GSTM5P1 glutathione S-transferase mu 5 pseudogene 1 O - 20121230 -9606 2946 GSTM2 - GST4|GSTM|GSTM2-2|GTHMUS HGNC:4634|MIM:138380|Ensembl:ENSG00000213366|HPRD:00710|Vega:OTTHUMG00000011638 1 1p13.3 glutathione S-transferase mu 2 (muscle) protein-coding GSTM2 glutathione S-transferase mu 2 (muscle) O GST class-mu 2|GST, muscle|S-(hydroxyalkyl)glutathione lyase M2|glutathione S-alkyltransferase M2|glutathione S-aralkyltransferase M2|glutathione S-aryltransferase M2|glutathione S-transferase 4|glutathione S-transferase M1|glutathione S-transferase M2 (muscle)|glutathione S-transferase Mu 2 20121230 -9606 2947 GSTM3 RP4-735C1.2 GST5|GSTB|GSTM3-3|GTM3 HGNC:4635|MIM:138390|Ensembl:ENSG00000134202|HPRD:00712|Vega:OTTHUMG00000011640 1 1p13.3 glutathione S-transferase mu 3 (brain) protein-coding GSTM3 glutathione S-transferase mu 3 (brain) O GST class-mu 3|S-(hydroxyalkyl)glutathione lyase M3|brain GST|brain type mu-glutathione S-transferase|glutathione S-alkyltransferase M3|glutathione S-aralkyltransferase M3|glutathione S-aryltransferase M3|glutathione S-transferase M3 (brain)|glutathione S-transferase Mu 3|glutathione S-transferase, Mu-3|hGSTM3-3 20121230 -9606 2948 GSTM4 - GSTM4-4|GTM4 HGNC:4636|MIM:138333|Ensembl:ENSG00000168765|HPRD:00706|Vega:OTTHUMG00000011642 1 1p13.3 glutathione S-transferase mu 4 protein-coding GSTM4 glutathione S-transferase mu 4 O GST class-mu 4|GST-Mu2|GTS-Mu2|S-(hydroxyalkyl)glutathione lyase M4|glutathione S-alkyltransferase M4|glutathione S-aralkyltransferase M4|glutathione S-aryltransferase M4|glutathione S-transferase M4|glutathione S-transferase Mu 4 20121230 -9606 2949 GSTM5 RP4-735C1.1 GSTM5-5|GTM5 HGNC:4637|MIM:138385|Ensembl:ENSG00000134201|HPRD:00711|Vega:OTTHUMG00000011644 1 1p13.3 glutathione S-transferase mu 5 protein-coding GSTM5 glutathione S-transferase mu 5 O GST class-mu 5|S-(hydroxyalkyl)glutathione lyase M5|glutathione S-alkyltransferase M5|glutathione S-aralkyltransferase M5|glutathione S-aryltransferase M5|glutathione S-transferase M5|glutathione S-transferase Mu 5 20121230 -9606 2950 GSTP1 - DFN7|FAEES3|GST3|GSTP|PI HGNC:4638|MIM:134660|Ensembl:ENSG00000084207|HPRD:00614|Vega:OTTHUMG00000137430 11 11q13 glutathione S-transferase pi 1 protein-coding GSTP1 glutathione S-transferase pi 1 O GST class-pi|GSTP1-1|deafness, X-linked 7|fatty acid ethyl ester synthase III|glutathione S-transferase P 20121230 -9606 2951 GSTP1P1 - GST3L|GSTP1P|GSTPL|GSTPP HGNC:4640 12 12q13-q14 glutathione S-transferase pi 1 pseudogene 1 pseudo GSTP1P1 glutathione S-transferase pi 1 pseudogene 1 O - 20121230 -9606 2952 GSTT1 - - HGNC:4641|MIM:600436|Ensembl:ENSG00000184674|HPRD:02700|Vega:OTTHUMG00000150816 22 22q11.23 glutathione S-transferase theta 1 protein-coding GSTT1 glutathione S-transferase theta 1 O GST class-theta-1|glutathione S-transferase theta-1|glutathione transferase T1-1 20121230 -9606 2953 GSTT2 hCG_41095 GSTT2B HGNC:4642|MIM:600437|Ensembl:ENSG00000099984|HPRD:02701|Vega:OTTHUMG00000150786 22 22q11.23 glutathione S-transferase theta 2 protein-coding GSTT2 glutathione S-transferase theta 2 O GST class-theta-2|Glutathione S-transferase theta-2B|glutathione S-transferase theta-2 20121230 -9606 2954 GSTZ1 - GSTZ1-1|MAAI|MAI HGNC:4643|MIM:603758|Ensembl:ENSG00000100577|HPRD:04785|Vega:OTTHUMG00000171551 14 14q24.3 glutathione S-transferase zeta 1 protein-coding GSTZ1 glutathione S-transferase zeta 1 O S-(hydroxyalkyl)glutathione lyase|glutathione S-alkyltransferase|glutathione S-aralkyltransferase|glutathione S-aryltransferase|glutathione transferase zeta 1|maleylacetoacetate isomerase|maleylacetone isomerase 20121230 -9606 2956 MSH6 - GTBP|HNPCC5|HSAP HGNC:7329|MIM:600678|Ensembl:ENSG00000116062|HPRD:07202|Vega:OTTHUMG00000129129 2 2p16 mutS homolog 6 (E. coli) protein-coding MSH6 mutS homolog 6 (E. coli) O DNA mismatch repair protein Msh6|G/T mismatch-binding protein|GTMBP|hMSH6|mutS-alpha 160 kDa subunit|p160|sperm-associated protein 20121230 -9606 2957 GTF2A1 - TF2A1|TFIIA|TFIIA-42|TFIIAL HGNC:4646|MIM:600520|Ensembl:ENSG00000165417|HPRD:02748|Vega:OTTHUMG00000171414 14 14q31.1 general transcription factor IIA, 1, 19/37kDa protein-coding GTF2A1 general transcription factor IIA, 1, 19/37kDa O TFIIA alpha, p55|general transcription factor IIA subunit 1|glucose regulated protein, 58kD pseudogene|transcription initiation factor IIA subunit 1|transcription initiation factor TFIIA 42 kDa subunit 20121230 -9606 2958 GTF2A2 - HsT18745|TF2A2|TFIIA HGNC:4647|MIM:600519|Ensembl:ENSG00000140307|HPRD:02747|Vega:OTTHUMG00000132725 15 15q22.2 general transcription factor IIA, 2, 12kDa protein-coding GTF2A2 general transcription factor IIA, 2, 12kDa O TFIIA p12 subunit|TFIIA-12|TFIIA-gamma|TFIIAS|general transcription factor IIA subunit 2|transcription initiation factor IIA gamma chain|transcription initiation factor IIA subunit 2 20121230 -9606 2959 GTF2B RP11-82K18.1 TF2B|TFIIB HGNC:4648|MIM:189963|Ensembl:ENSG00000137947|HPRD:08928|Vega:OTTHUMG00000010611 1 1p22-p21 general transcription factor IIB protein-coding GTF2B general transcription factor IIB O RNA polymerase II transcription factor IIB|S300-II|general transcription factor TFIIB|transcription initiation factor IIB 20121230 -9606 2960 GTF2E1 - FE|TF2E1|TFIIE-A HGNC:4650|MIM:189962|Ensembl:ENSG00000153767|HPRD:01799|Vega:OTTHUMG00000159667 3 3q21-q24 general transcription factor IIE, polypeptide 1, alpha 56kDa protein-coding GTF2E1 general transcription factor IIE, polypeptide 1, alpha 56kDa O TFIIE-alpha|general transcription factor IIE 56 kDa subunit|general transcription factor IIE subunit 1|transcription initiation factor IIE subunit alpha 20121230 -9606 2961 GTF2E2 - FE|TF2E2|TFIIE-B HGNC:4651|MIM:189964|Ensembl:ENSG00000197265|HPRD:01800|Vega:OTTHUMG00000163934 8 8p12 general transcription factor IIE, polypeptide 2, beta 34kDa protein-coding GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa O TFIIE-beta|general transcription factor IIE subunit 2|transcription initiation factor IIE subunit beta 20121230 -9606 2962 GTF2F1 - BTF4|RAP74|TF2F1|TFIIF HGNC:4652|MIM:189968|Ensembl:ENSG00000125651|HPRD:01803 19 19p13.3 general transcription factor IIF, polypeptide 1, 74kDa protein-coding GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa O TFIIF-alpha|general transcription factor IIF 74 kDa subunit|general transcription factor IIF subunit 1|transcription initiation factor IIF subunit alpha|transcription initiation factor RAP74 20121230 -9606 2963 GTF2F2 - BTF4|RAP30|TF2F2|TFIIF HGNC:4653|MIM:189969|Ensembl:ENSG00000188342|HPRD:01804|Vega:OTTHUMG00000016849 13 13q14 general transcription factor IIF, polypeptide 2, 30kDa protein-coding GTF2F2 general transcription factor IIF, polypeptide 2, 30kDa O ATP-dependent helicase GTF2F2|TFIIF-beta|general transcription factor IIF 30 kDa subunit|general transcription factor IIF subunit 2|transcription initiation factor IIF subunit beta|transcription initiation factor RAP30 20121230 -9606 2964 GTF2F2P1 - GTF2F2L|TFIIF HGNC:4654 4 4q31.22 general transcription factor IIF, polypeptide 2 pseudogene 1 pseudo GTF2F2P1 general transcription factor IIF, polypeptide 2 pseudogene 1 O - 20121230 -9606 2965 GTF2H1 - BTF2|P62|TFB1|TFIIH HGNC:4655|MIM:189972|Ensembl:ENSG00000110768|HPRD:01807|Vega:OTTHUMG00000167690 11 11p15.1-p14 general transcription factor IIH, polypeptide 1, 62kDa protein-coding GTF2H1 general transcription factor IIH, polypeptide 1, 62kDa O BTF2 p62|TFIIH basal transcription factor complex p62 subunit|basic transcription factor 2 62 kDa subunit|general transcription factor IIH polypeptide 1|general transcription factor IIH subunit 1 20121230 -9606 2966 GTF2H2 - BTF2|BTF2P44|T-BTF2P44|TFIIH|p44 HGNC:4656|MIM:601748|Ensembl:ENSG00000145736|HPRD:03450|Vega:OTTHUMG00000164542 5 5q13.2 general transcription factor IIH, polypeptide 2, 44kDa protein-coding GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa O BTF2 p44|TFIIH basal transcription factor complex p44 subunit|basic transcription factor 2 44 kDa subunit|general transcription factor IIH polypeptide 2|general transcription factor IIH subunit 2|general transcription factor IIH, polypeptide 2, 44kD subunit 20121230 -9606 2967 GTF2H3 - BTF2|P34|TFB4|TFIIH HGNC:4657|MIM:601750|Ensembl:ENSG00000111358|HPRD:07531|Vega:OTTHUMG00000168697 12 12q24.31 general transcription factor IIH, polypeptide 3, 34kDa protein-coding GTF2H3 general transcription factor IIH, polypeptide 3, 34kDa O TFIIH basal transcription factor complex p34 subunit|basic transcription factor 2 34 kDa subunit|general transcription factor IIH subunit 3 20121230 -9606 2968 GTF2H4 DADB-160J14.4 P52|TFB2|TFIIH HGNC:4658|MIM:601760|Ensembl:ENSG00000213780|HPRD:03456|Vega:OTTHUMG00000031043 6 6p21.3 general transcription factor IIH, polypeptide 4, 52kDa protein-coding GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa O BTF2 p52|TFIIH basal transcription factor complex p52 subunit|basic transcription factor 2 52 kDa subunit|general transcription factor IIH polypeptide 4|general transcription factor IIH subunit 4 20121230 -9606 2969 GTF2I - BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 HGNC:4659|MIM:601679|Ensembl:ENSG00000077809|HPRD:03399|Vega:OTTHUMG00000156237 7 7q11.23 general transcription factor IIi protein-coding GTF2I general transcription factor IIi O BTK-associated protein 135|BTK-associated protein, 135kD|Bruton tyrosine kinase-associated protein 135|SRF-Phox1-interacting protein|Williams-Beuren syndrome chromosome region 6|general transcription factor II-I|williams-Beuren syndrome chromosomal region 6 protein 20121230 -9606 2970 GTF2IP1 - WBSCR7 HGNC:4660 7 7q11.23 general transcription factor IIi, pseudogene 1 pseudo GTF2IP1 general transcription factor IIi, pseudogene 1 O - 20121230 -9606 2971 GTF3A RP11-125I23.2 AP2|TFIIIA HGNC:4662|MIM:600860|Ensembl:ENSG00000122034|HPRD:02916|Vega:OTTHUMG00000016632 13 13q12.3-q13.1 general transcription factor IIIA protein-coding GTF3A general transcription factor IIIA O transcription factor IIIA 20121230 -9606 2972 BRF1 - BRF|BRF-1|GTF3B|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF HGNC:11551|MIM:604902|Ensembl:ENSG00000185024|HPRD:05361|Vega:OTTHUMG00000029884 14 14q BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) protein-coding BRF1 BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) O B - related factor 1|TATA box binding protein (TBP)-associated factor 3C|TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 2|TBP - associated factor, RNA polymerase III, 90kD|general transcription factor IIIB, 90kD subunit|transcription factor IIIB 90 kDa subunit 20121230 -9606 2973 GTS - - HGNC:4671|MIM:137580 11 11q23 Gilles de la Tourette syndrome unknown GTS Gilles de la Tourette syndrome O - 20120622 -9606 2974 GUCY1B2 - GC-SB2 HGNC:4686|MIM:603695|HPRD:07542 13 13q14.3 guanylate cyclase 1, soluble, beta 2 (pseudogene) pseudo GUCY1B2 guanylate cyclase 1, soluble, beta 2 (pseudogene) O - 20121230 -9606 2975 GTF3C1 - TFIIIC|TFIIIC220|TFIIICalpha HGNC:4664|MIM:603246|Ensembl:ENSG00000077235|HPRD:07540|Vega:OTTHUMG00000176805 16 16p12 general transcription factor IIIC, polypeptide 1, alpha 220kDa protein-coding GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa O TF3C-alpha|TFIIIC 220 kDa subunit|TFIIIC box B-binding subunit|general transcription factor 3C polypeptide 1|general transcription factor IIIC, polypeptide 1 (alpha subunit)|transcription factor IIIC 220 kDa subunit|transcription factor IIIC subunit alpha 20121230 -9606 2976 GTF3C2 - TFIIIC-BETA|TFIIIC110 HGNC:4665|MIM:604883|Ensembl:ENSG00000115207|HPRD:05347|Vega:OTTHUMG00000097785 2 2p23.3 general transcription factor IIIC, polypeptide 2, beta 110kDa protein-coding GTF3C2 general transcription factor IIIC, polypeptide 2, beta 110kDa O TF3C-beta|TFIIIC 110 kDa subunit|general transcription factor 3C polypeptide 2|transcription factor IIIC 110 kDa subunit|transcription factor IIIC subunit beta 20121230 -9606 2977 GUCY1A2 - GC-SA2|GUC1A2 HGNC:4684|MIM:601244|Ensembl:ENSG00000152402|HPRD:03146|Vega:OTTHUMG00000166296 11 11q21-q22 guanylate cyclase 1, soluble, alpha 2 protein-coding GUCY1A2 guanylate cyclase 1, soluble, alpha 2 O GCS-alpha-2|guanylate cyclase soluble subunit alpha-2 20121230 -9606 2978 GUCA1A RP1-139D8.2 C6orf131|COD3|CORD14|GCAP|GCAP1|GUCA|GUCA1|dJ139D8.6 HGNC:4678|MIM:600364|Ensembl:ENSG00000048545|HPRD:02648|Vega:OTTHUMG00000014696 6 6p21.1 guanylate cyclase activator 1A (retina) protein-coding GUCA1A guanylate cyclase activator 1A (retina) O GCAP 1|cone dystrophy 3|guanylate cyclase-activating protein, photoreceptor 1|guanylin 1, retina|guanylyl cyclase-activating protein 1 20121230 -9606 2979 GUCA1B RP1-139D8.1 GCAP2|GUCA2|RP48 HGNC:4679|MIM:602275|Ensembl:ENSG00000112599|HPRD:03783|Vega:OTTHUMG00000014697 6 6p21.1 guanylate cyclase activator 1B (retina) protein-coding GUCA1B guanylate cyclase activator 1B (retina) O GCAP 2|guanylate cyclase-activating protein, photoreceptor 2|guanylyl cyclase-activating protein 2 20121230 -9606 2980 GUCA2A - GCAP-I|GUCA2|STARA HGNC:4682|MIM:139392|Ensembl:ENSG00000197273|HPRD:00767|Vega:OTTHUMG00000007023 1 1p35-p34 guanylate cyclase activator 2A (guanylin) protein-coding GUCA2A guanylate cyclase activator 2A (guanylin) O guanylate cyclase activator 2A (guanylin 2, intestinal, heat-stable)|guanylate cyclase-activating protein 1|guanylate cyclase-activating protein I|guanylin 20121230 -9606 2981 GUCA2B - GCAP-II|UGN HGNC:4683|MIM:601271|Ensembl:ENSG00000044012|HPRD:03170|Vega:OTTHUMG00000007024 1 1p34-p33 guanylate cyclase activator 2B (uroguanylin) protein-coding GUCA2B guanylate cyclase activator 2B (uroguanylin) O guanylate cyclase activator 2B|uroguanylin 20121230 -9606 2982 GUCY1A3 - GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A1 HGNC:4685|MIM:139396|Ensembl:ENSG00000164116|HPRD:00768|Vega:OTTHUMG00000161700 4 4q31.1-q31.2 guanylate cyclase 1, soluble, alpha 3 protein-coding GUCY1A3 guanylate cyclase 1, soluble, alpha 3 O GC-S-alpha-1|GCS-alpha-1|GCS-alpha-3|guanylate cyclase soluble subunit alpha-3|soluble guanylate cyclase large subunit 20121230 -9606 2983 GUCY1B3 - GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B1 HGNC:4687|MIM:139397|Ensembl:ENSG00000061918|HPRD:00769|Vega:OTTHUMG00000161698 4 4q31.3-q33 guanylate cyclase 1, soluble, beta 3 protein-coding GUCY1B3 guanylate cyclase 1, soluble, beta 3 O GCS-beta-1|GCS-beta-3|guanylate cyclase soluble subunit beta-1|guanylate cyclase soluble subunit beta-3|soluble guanylate cyclase small subunit 20121230 -9606 2984 GUCY2C - DIAR6|GUC2C|MECIL|MUCIL|STAR HGNC:4688|MIM:601330|Ensembl:ENSG00000070019|HPRD:07529|Vega:OTTHUMG00000168732 12 12p12 guanylate cyclase 2C (heat stable enterotoxin receptor) protein-coding GUCY2C guanylate cyclase 2C (heat stable enterotoxin receptor) O GC-C|STA receptor|guanylyl cyclase C|hSTAR|heat-stable enterotoxin receptor|intestinal guanylate cyclase 20121230 -9606 2986 GUCY2F - CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 HGNC:4691|MIM:300041|Ensembl:ENSG00000101890|HPRD:02078|Vega:OTTHUMG00000022184 X Xq22 guanylate cyclase 2F, retinal protein-coding GUCY2F guanylate cyclase 2F, retinal O guanylate cyclase 2D-like, membrane (retina-specific)|guanylate cyclase F|retinal guanylyl cyclase 2|rod outer segment membrane guanylate cyclase 2 20121230 -9606 2987 GUK1 RP11-520H14.2 GMK HGNC:4693|MIM:139270|Ensembl:ENSG00000143774|HPRD:00755|Vega:OTTHUMG00000039503 1 1q32-q41 guanylate kinase 1 protein-coding GUK1 guanylate kinase 1 O ATP:GMP phosphotransferase|GMP kinase|guanylate kinase 20121230 -9606 2988 GUK2 - - HGNC:4694|MIM:139280 1 1q32.1-q42 guanylate kinase 2 protein-coding GUK2 guanylate kinase 2 O - 20080828 -9606 2989 GULOP - GULO|SCURVY HGNC:4695|MIM:240400 8 8p21.1 gulonolactone (L-) oxidase, pseudogene pseudo GULOP gulonolactone (L-) oxidase, pseudogene O - 20121230 -9606 2990 GUSB tcag7.927 BG|MPS7 HGNC:4696|MIM:611499|Ensembl:ENSG00000169919|HPRD:02018|Vega:OTTHUMG00000023735 7 7q21.11 glucuronidase, beta protein-coding GUSB glucuronidase, beta O beta-D-glucuronidase|beta-G1|beta-glucuronidase 20121230 -9606 2992 GYG1 - GSD15|GYG HGNC:4699|MIM:603942|Ensembl:ENSG00000163754|HPRD:06805|Vega:OTTHUMG00000159533 3 3q24-q25.1 glycogenin 1 protein-coding GYG1 glycogenin 1 O GN-1|glycogenin-1 20121230 -9606 2993 GYPA - CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 HGNC:4702|MIM:111300|Ensembl:ENSG00000170180|HPRD:07508|Vega:OTTHUMG00000161403 4 4q31.21 glycophorin A (MNS blood group) protein-coding GYPA glycophorin A (MNS blood group) O MN sialoglycoprotein|Mi.V glycoprotein (24 AA)|erythroid-lineage-specific membrane sialoglycoprotein|glycophorin A (MN blood group)|glycophorin A, GPA|glycophorin Erik|glycophorin MiI|glycophorin MiV|glycophorin SAT|glycophorin Sta type C|glycophorin-A|recombinant glycophorin A-B Miltenberger-DR|sialoglycoprotein alpha 20121230 -9606 2994 GYPB - CD235b|GPB|GPB.NY|GYPHe.NY|GpMiIII|HGpMiIII|HGpMiVI|HGpMiX|MNS|PAS-3|SS HGNC:4703|MIM:111740|Ensembl:ENSG00000250361|HPRD:00201|Vega:OTTHUMG00000161404 4 4q31.21 glycophorin B (MNS blood group) protein-coding GYPB glycophorin B (MNS blood group) O SS-active sialoglycoprotein|Ss blood group|glycophorin HeP2|glycophorin MiIII|glycophorin MiVI|glycophorin MiX|glycophorin-B|sialoglycoprotein delta 20121230 -9606 2995 GYPC - CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2' HGNC:4704|MIM:110750|Ensembl:ENSG00000136732|HPRD:00193|Vega:OTTHUMG00000131464 2 2q14-q21 glycophorin C (Gerbich blood group) protein-coding GYPC glycophorin C (Gerbich blood group) O glycoconnectin|glycophorin-C|glycophorin-D|glycoprotein beta|sialoglycoprotein D 20121230 -9606 2996 GYPE - GPE|MNS|MiIX HGNC:4705|MIM:138590|Ensembl:ENSG00000197465|HPRD:00723|Vega:OTTHUMG00000161402 4 4q31.1 glycophorin E (MNS blood group) protein-coding GYPE glycophorin E (MNS blood group) O glycophorin-E 20121230 -9606 2997 GYS1 - GSY|GYS HGNC:4706|MIM:138570|Ensembl:ENSG00000104812|HPRD:00721|Vega:OTTHUMG00000150723 19 19q13.3 glycogen synthase 1 (muscle) protein-coding GYS1 glycogen synthase 1 (muscle) O glycogen [starch] synthase, muscle 20121230 -9606 2998 GYS2 - - HGNC:4707|MIM:138571|Ensembl:ENSG00000111713|HPRD:00722|Vega:OTTHUMG00000169135 12 12p12.2 glycogen synthase 2 (liver) protein-coding GYS2 glycogen synthase 2 (liver) O glycogen [starch] synthase, liver 20121230 -9606 2999 GZMH - CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2 HGNC:4710|MIM:116831|Ensembl:ENSG00000100450|HPRD:00290|Vega:OTTHUMG00000140185 14 14q11.2 granzyme H (cathepsin G-like 2, protein h-CCPX) protein-coding GZMH granzyme H (cathepsin G-like 2, protein h-CCPX) O cytotoxic T-lymphocyte proteinase|cytotoxic T-lymphocyte-associated serine esterase 1|cytotoxin serine protease-C|granzyme H 20121230 -9606 3000 GUCY2D - CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC HGNC:4689|MIM:600179|Ensembl:ENSG00000132518|HPRD:02550|Vega:OTTHUMG00000108169 17 17p13.1 guanylate cyclase 2D, membrane (retina-specific) protein-coding GUCY2D guanylate cyclase 2D, membrane (retina-specific) O ROS-GC|guanylate cyclase 2D, retinal|retinal guanylyl cyclase 1|rod outer segment membrane guanylate cyclase 20121230 -9606 3001 GZMA - CTLA3|HFSP HGNC:4708|MIM:140050|Ensembl:ENSG00000145649|HPRD:00771|Vega:OTTHUMG00000097011 5 5q11-q12 granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) protein-coding GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) O CTL tryptase|Granzyme A (Cytotoxic T-lymphocyte-associated serine esterase-3; Hanukah factor serine protease)|HF|cytotoxic T-lymphocyte proteinase 1|fragmentin-1|granzyme A|h factor 20121230 -9606 3002 GZMB - CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT HGNC:4709|MIM:123910|Ensembl:ENSG00000100453|HPRD:00476|Vega:OTTHUMG00000029369 14 14q11.2 granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) protein-coding GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) O C11|CTLA-1|T-cell serine protease 1-3E|cathepsin G-like 1|cytotoxic T-lymphocyte proteinase 2|cytotoxic serine protease B|fragmentin 2|fragmentin-2|granzyme B|human lymphocyte protein 20121230 -9606 3003 GZMK - TRYP2 HGNC:4711|MIM:600784|Ensembl:ENSG00000113088|HPRD:02872|Vega:OTTHUMG00000097009 5 5q11.2 granzyme K (granzyme 3; tryptase II) protein-coding GZMK granzyme K (granzyme 3; tryptase II) O NK-Tryp-2|NK-tryptase-2|fragmentin-3|granzyme 3|granzyme K|granzyme K (serine protease, granzyme 3; tryptase II)|granzyme-3|tryptase II 20121230 -9606 3004 GZMM - LMET1|MET1 HGNC:4712|MIM:600311|Ensembl:ENSG00000197540|HPRD:02633|Vega:OTTHUMG00000180559 19 19p13.3 granzyme M (lymphocyte met-ase 1) protein-coding GZMM granzyme M (lymphocyte met-ase 1) O HU-Met-1|Met-1 serine protease|granzyme M|lymphocyte met-ase 1|met-ase|natural killer cell granular protease 20121230 -9606 3005 H1F0 - H10|H1FV HGNC:4714|MIM:142708|Ensembl:ENSG00000189060|HPRD:00819|Vega:OTTHUMG00000150659 22 22q13.1 H1 histone family, member 0 protein-coding H1F0 H1 histone family, member 0 O H1.0, H1(0), H1-0|histone H1'|histone H1(0)|histone H1.0 20121230 -9606 3006 HIST1H1C - H1.2|H1C|H1F2|H1s-1 HGNC:4716|MIM:142710|Ensembl:ENSG00000187837|HPRD:07514|Vega:OTTHUMG00000016140 6 6p21.3 histone cluster 1, H1c protein-coding HIST1H1C histone cluster 1, H1c O H1 histone family, member 2|histone 1, H1c|histone H1.2|histone H1c|histone H1d|histone H1s-1 20121230 -9606 3007 HIST1H1D - H1.3|H1D|H1F3|H1s-2 HGNC:4717|MIM:142210|Ensembl:ENSG00000124575|HPRD:06764|Vega:OTTHUMG00000014432 6 6p21.3 histone cluster 1, H1d protein-coding HIST1H1D histone cluster 1, H1d O H1 histone family, member 3|histone 1, H1d|histone H1.3|histone H1c|histone H1s-2 20121230 -9606 3008 HIST1H1E - H1.4|H1E|H1F4|H1s-4|dJ221C16.5 HGNC:4718|MIM:142220|Ensembl:ENSG00000168298|HPRD:07513|Vega:OTTHUMG00000014422 6 6p21.3 histone cluster 1, H1e protein-coding HIST1H1E histone cluster 1, H1e O H1 histone family, member 4|histone 1, H1e|histone H1.4|histone H1b|histone H1s-4 20121230 -9606 3009 HIST1H1B - H1|H1.5|H1B|H1F5|H1s-3 HGNC:4719|MIM:142711|Ensembl:ENSG00000184357|HPRD:00821|Vega:OTTHUMG00000016139 6 6p22.1 histone cluster 1, H1b protein-coding HIST1H1B histone cluster 1, H1b O H1 histone family, member 5|histone 1, H1b|histone H1.5|histone H1a|histone H1b|histone H1s-3 20121230 -9606 3010 HIST1H1T - H1FT|H1t|dJ221C16.2 HGNC:4720|MIM:142712|Ensembl:ENSG00000187475|HPRD:00822|Vega:OTTHUMG00000014430 6 6p21.3 histone cluster 1, H1t protein-coding HIST1H1T histone cluster 1, H1t O H1 histone family, member T (testis-specific)|histone 1, H1t|histone H1t|testicular H1 histone 20121230 -9606 3012 HIST1H2AE - H2A.1|H2A.2|H2A/a|H2AFA HGNC:4724|MIM:602786|Ensembl:ENSG00000168274|HPRD:04152|Vega:OTTHUMG00000014440 6 6p22.1 histone cluster 1, H2ae protein-coding HIST1H2AE histone cluster 1, H2ae O H2A histone family, member A|histone 1, H2ae|histone H2A type 1-B/E|histone H2A/a|histone H2AE 20121230 -9606 3013 HIST1H2AD - H2A.3|H2A/g|H2AFG HGNC:4729|MIM:602792|Ensembl:ENSG00000196866|HPRD:07534|Vega:OTTHUMG00000014437 6 6p21.3 histone cluster 1, H2ad protein-coding HIST1H2AD histone cluster 1, H2ad O H2A histone family, member G|histone 1, H2ad|histone H2A type 1-D|histone H2A.3|histone H2A/g|histone H2AD 20121230 -9606 3014 H2AFX - H2A.X|H2A/X|H2AX HGNC:4739|MIM:601772|Ensembl:ENSG00000188486|HPRD:03465|Vega:OTTHUMG00000166196 11 11q23.3 H2A histone family, member X protein-coding H2AFX H2A histone family, member X O H2AX histone|histone H2A.x 20121230 -9606 3015 H2AFZ - H2A.z|H2A/z|H2AZ HGNC:4741|MIM:142763|Ensembl:ENSG00000164032|HPRD:00823|Vega:OTTHUMG00000131048 4 4q24 H2A histone family, member Z protein-coding H2AFZ H2A histone family, member Z O H2AZ histone|histone H2A.Z 20121230 -9606 3017 HIST1H2BD - H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6 HGNC:4747|MIM:602799|Ensembl:ENSG00000158373|HPRD:07535|Vega:OTTHUMG00000014426 6 6p21.3 histone cluster 1, H2bd protein-coding HIST1H2BD histone cluster 1, H2bd O H2B histone family, member B|HIRA-interacting protein 2|histone 1, H2bd|histone H2B type 1-D|histone H2B.1 B|histone H2B.b 20121230 -9606 3018 HIST1H2BB - H2B.1|H2B/f|H2BFF HGNC:4751|MIM:602803|Ensembl:ENSG00000196226|HPRD:07536|Vega:OTTHUMG00000014421 6 6p21.3 histone cluster 1, H2bb protein-coding HIST1H2BB histone cluster 1, H2bb O H2B histone family, member F|histone 1, H2bb|histone H2B type 1-B|histone H2B.1|histone H2B.f 20121230 -9606 3020 H3F3A RP11-396C23.1 H3.3A|H3F3 HGNC:4764|MIM:601128|Ensembl:ENSG00000163041|HPRD:03082|Vega:OTTHUMG00000037507 1 1q42.12 H3 histone, family 3A protein-coding H3F3A H3 histone, family 3A O histone H3.3 20121230 -9606 3021 H3F3B - H3.3B HGNC:4765|MIM:601058|Ensembl:ENSG00000132475|HPRD:03036|Vega:OTTHUMG00000179842 17 17q25.1 H3 histone, family 3B (H3.3B) protein-coding H3F3B H3 histone, family 3B (H3.3B) O H3 histone, family 3A|histone H3.3 20121230 -9606 3024 HIST1H1A - H1.1|H1A|H1F1|HIST1 HGNC:4715|MIM:142709|Ensembl:ENSG00000124610|HPRD:00820|Vega:OTTHUMG00000016413 6 6p21.3 histone cluster 1, H1a protein-coding HIST1H1A histone cluster 1, H1a O H1 histone family, member 1|histone 1, H1a|histone H1.1|histone H1a 20121230 -9606 3026 HABP2 - FSAP|HABP|HGFAL|PHBP HGNC:4798|MIM:603924|Ensembl:ENSG00000148702|HPRD:04890|Vega:OTTHUMG00000019073 10 10q25.3 hyaluronan binding protein 2 protein-coding HABP2 hyaluronan binding protein 2 O factor VII activating protein|factor VII-activating protease|factor seven-activating protease|hepatocyte growth factor activator-like protein|hyaluronan-binding protein 2|hyaluronic acid binding protein 2|plasma hyaluronan binding protein|plasma hyaluronan-binding protein 20121230 -9606 3028 HSD17B10 RP3-339A18.2 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 HGNC:4800|MIM:300256|Ensembl:ENSG00000072506|HPRD:02223|Vega:OTTHUMG00000021612 X Xp11.2 hydroxysteroid (17-beta) dehydrogenase 10 protein-coding HSD17B10 hydroxysteroid (17-beta) dehydrogenase 10 O 3-hydroxy-2-methylbutyryl-CoA dehydrogenase|3-hydroxyacyl-CoA dehydrogenase type-2|AB-binding alcohol dehydrogenase|amyloid-beta peptide binding alcohol dehydrogenase|endoplasmic reticulum-associated amyloid beta-peptide-binding protein|mitochondrial RNase P subunit 2|mitochondrial ribonuclease P protein 2|short chain L-3-hydroxyacyl-CoA dehydrogenase type 2|short chain dehydrogenase/reductase family 5C, member 1|short chain type dehydrogenase/reductase XH98G2 20121230 -9606 3029 HAGH - GLO2|GLX2|GLXII|HAGH1 HGNC:4805|MIM:138760|Ensembl:ENSG00000063854|HPRD:00731|Vega:OTTHUMG00000128662 16 16p13.3 hydroxyacylglutathione hydrolase protein-coding HAGH hydroxyacylglutathione hydrolase O glx II|glyoxalase II|hydroxyacylglutathione hydrolase, mitochondrial|hydroxyacylglutathione hydroxylase 20121230 -9606 3030 HADHA - ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA HGNC:4801|MIM:600890|Ensembl:ENSG00000084754|HPRD:02934|Vega:OTTHUMG00000096979 2 2p23 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit protein-coding HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit O 3-ketoacyl-Coenzyme A (CoA) thiolase, alpha subunit|3-oxoacyl-CoA thiolase|78 kDa gastrin-binding protein|gastrin-binding protein|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit|long-chain 2-enoyl-CoA hydratase|long-chain-3-hydroxyacyl-CoA dehydrogenase|mitochondrial long-chain 2-enoyl-Coenzyme A (CoA) hydratase, alpha subunit|mitochondrial long-chain L-3-hydroxyacyl-Coenzyme A (CoA) dehydrogenase, alpha subunit|mitochondrial trifunctional enzyme, alpha subunit|mitochondrial trifunctional protein, alpha subunit|trifunctional enzyme subunit alpha, mitochondrial 20121230 -9606 3031 HADHAP1 - HADHAP HGNC:4802 4 4q32 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit pseudogene 1 pseudo HADHAP1 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit pseudogene 1 O - 20121230 -9606 3032 HADHB MSTP029 ECHB|MTPB|TP-BETA HGNC:4803|MIM:143450|Ensembl:ENSG00000138029|HPRD:00887|Vega:OTTHUMG00000096978 2 2p23 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit protein-coding HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit O 2-enoyl-Coenzyme A (CoA) hydratase, beta subunit|3-ketoacyl-Coenzyme A (CoA) thiolase of mitochondrial trifunctional protein, beta subunit|acetyl-CoA acyltransferase|beta-ketothiolase|hydroxyacyl-Coenzyme A (CoA) dehydrogenase, beta subunit|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit|mitochondrial trifunctional enzyme, beta subunit|mitochondrial trifunctional protein, beta subunit|trifunctional enzyme subunit beta, mitochondrial 20121230 -9606 3033 HADH - HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD HGNC:4799|MIM:601609|Ensembl:ENSG00000138796|Vega:OTTHUMG00000131810 4 4q22-q26 hydroxyacyl-CoA dehydrogenase protein-coding HADH hydroxyacyl-CoA dehydrogenase O L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chain|hydroxyacyl-coenzyme A dehydrogenase, mitochondrial|medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase|short-chain 3-hydroxyacyl-CoA dehydrogenase 20121230 -9606 3034 HAL - HIS|HSTD HGNC:4806|MIM:609457|Ensembl:ENSG00000084110|HPRD:07187|Vega:OTTHUMG00000170354 12 12q22-q24.1 histidine ammonia-lyase protein-coding HAL histidine ammonia-lyase O histidase 20121230 -9606 3035 HARS - HRS|USH3B HGNC:4816|MIM:142810|Ensembl:ENSG00000170445|HPRD:00827|Vega:OTTHUMG00000129502 5 5q31.3 histidyl-tRNA synthetase protein-coding HARS histidyl-tRNA synthetase O HisRS|histidine translase|histidine--tRNA ligase, cytoplasmic 20121230 -9606 3036 HAS1 - HAS HGNC:4818|MIM:601463|Ensembl:ENSG00000105509|HPRD:03271 19 19q13.4 hyaluronan synthase 1 protein-coding HAS1 hyaluronan synthase 1 O HA synthase 1|huHAS1|hyaluronate synthase 1|hyaluronic acid synthase 1 20121230 -9606 3037 HAS2 - - HGNC:4819|MIM:601636|Ensembl:ENSG00000170961|HPRD:07045|Vega:OTTHUMG00000164953 8 8q24.12 hyaluronan synthase 2 protein-coding HAS2 hyaluronan synthase 2 O HA synthase 2|hyaluronate synthase 2|hyaluronic acid synthase 2 20121230 -9606 3038 HAS3 - - HGNC:4820|MIM:602428|Ensembl:ENSG00000103044|HPRD:03889|Vega:OTTHUMG00000137562 16 16q22.1 hyaluronan synthase 3 protein-coding HAS3 hyaluronan synthase 3 O HA synthase 3|hyaluronate synthase 3|hyaluronic acid synthase 3 20121230 -9606 3039 HBA1 - CD31|HBH HGNC:4823|MIM:141800|Ensembl:ENSG00000206172|HPRD:00784|Vega:OTTHUMG00000060138 16 16p13.3 hemoglobin, alpha 1 protein-coding HBA1 hemoglobin, alpha 1 O alpha one globin|alpha-1 globin|alpha-1-globin|alpha-globin|hemoglobin alpha 1 globin chain|hemoglobin alpha chain|hemoglobin alpha-1 chain|hemoglobin subunit alpha 20121230 -9606 3040 HBA2 - HBH HGNC:4824|MIM:141850|Ensembl:ENSG00000188536|HPRD:00785|Vega:OTTHUMG00000059924 16 16p13.3 hemoglobin, alpha 2 protein-coding HBA2 hemoglobin, alpha 2 O alpha globin|alpha-2 globin|alpha-globin|hemoglobin alpha chain|hemoglobin subunit alpha 20121230 -9606 3041 HBAP1 - - HGNC:4825 16 16p13.3 hemoglobin, alpha pseudogene 1 pseudo HBAP1 hemoglobin, alpha pseudogene 1 O - 20121230 -9606 3042 HBM - HBAP2 HGNC:4826|MIM:609639|Ensembl:ENSG00000206177|HPRD:13633|Vega:OTTHUMG00000059926 16 16p13.3 hemoglobin, mu protein-coding HBM hemoglobin, mu O alpha globin pseudogene 2|hemoglobin mu chain|hemoglobin subunit mu|hemoglobin, alpha pseudogene 2|mu-globin 20121230 -9606 3043 HBB - CD113t-C|beta-globin HGNC:4827|MIM:141900|Ensembl:ENSG00000244734|HPRD:00786|Vega:OTTHUMG00000066678 11 11p15.5 hemoglobin, beta protein-coding HBB hemoglobin, beta O beta globin chain|hemoglobin beta chain|hemoglobin subunit beta 20121230 -9606 3044 HBBP1 - - HGNC:4828 11 11p15.5 hemoglobin, beta pseudogene 1 pseudo HBBP1 hemoglobin, beta pseudogene 1 O - 20121230 -9606 3045 HBD - - HGNC:4829|MIM:142000|Ensembl:ENSG00000223609|HPRD:00787|Vega:OTTHUMG00000066674 11 11p15.5 hemoglobin, delta protein-coding HBD hemoglobin, delta O delta globin|delta-globin chain|hemoglobin delta chain|hemoglobin subunit delta 20121230 -9606 3046 HBE1 - HBE HGNC:4830|MIM:142100|Ensembl:ENSG00000213931|HPRD:00788 11 11p15.5 hemoglobin, epsilon 1 protein-coding HBE1 hemoglobin, epsilon 1 O epsilon globin|epsilon-globin|hemoglobin epsilon chain|hemoglobin subunit epsilon 20121230 -9606 3047 HBG1 PRO2979 HBGA|HBGR|HSGGL1 HGNC:4831|MIM:142200|Ensembl:ENSG00000213934|HPRD:00789|Vega:OTTHUMG00000066681 11 11p15.5 hemoglobin, gamma A protein-coding HBG1 hemoglobin, gamma A O A-gamma globin|gamma A hemoglobin|gamma globin|gamma-1-globin|hb F Agamma|hemoglobin gamma-1 chain|hemoglobin gamma-a chain|hemoglobin subunit gamma-1|hemoglobin, gamma, regulator of 20121230 -9606 3048 HBG2 - TNCY HGNC:4832|MIM:142250|Ensembl:ENSG00000196565|HPRD:00792 11 11p15.5 hemoglobin, gamma G protein-coding HBG2 hemoglobin, gamma G O G-gamma globin Paulinia|abnormal hemoglobin|gamma-2-globin|hb F Ggamma|hemoglobin gamma-2 chain|hemoglobin gamma-G chain|hemoglobin subunit gamma-2|methemoglobin 20121230 -9606 3049 HBQ1 - - HGNC:4833|MIM:142240|Ensembl:ENSG00000086506|HPRD:00791|Vega:OTTHUMG00000060727 16 16p13.3 hemoglobin, theta 1 protein-coding HBQ1 hemoglobin, theta 1 O hemoglobin subunit theta-1|hemoglobin theta-1 chain|theta-1-globin 20121230 -9606 3050 HBZ - - HGNC:4835|MIM:142310|Ensembl:ENSG00000130656|HPRD:00794|Vega:OTTHUMG00000059928 16 16p13.3 hemoglobin, zeta protein-coding HBZ hemoglobin, zeta O HBAZ|hemoglobin subunit zeta|hemoglobin zeta chain|zeta-globin 20121230 -9606 3051 HBZP1 - HBZP HGNC:4836 16 16p13.3 hemoglobin, zeta pseudogene 1 pseudo HBZP1 hemoglobin, zeta pseudogene 1 O - 20121230 -9606 3052 HCCS - CCHL|MCOPS7 HGNC:4837|MIM:300056|Ensembl:ENSG00000004961|HPRD:02085|Vega:OTTHUMG00000021128 X Xp22.3 holocytochrome c synthase protein-coding HCCS holocytochrome c synthase O cytochrome c heme-lyase|cytochrome c-type heme lyase|holocytochrome c-type synthase 20121230 -9606 3053 SERPIND1 - D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 HGNC:4838|MIM:142360|Ensembl:ENSG00000099937|HPRD:00795|Vega:OTTHUMG00000150755 22 22q11.21 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 protein-coding SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 O heparin cofactor 2|leuserpin 2|protease inhibitor leuserpin-2|serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1|serpin D1 20121230 -9606 3054 HCFC1 - CFF|HCF-1|HCF1|HFC1|MRX3|VCAF HGNC:4839|MIM:300019|Ensembl:ENSG00000172534|HPRD:02061|Vega:OTTHUMG00000024222 X Xq28 host cell factor C1 (VP16-accessory protein) protein-coding HCFC1 host cell factor C1 (VP16-accessory protein) O C1 factor|HCF|VP16 accessory protein|host cell factor 1 20121230 -9606 3055 HCK RP5-836N17.3 JTK9|p59Hck|p61Hck HGNC:4840|MIM:142370|Ensembl:ENSG00000101336|HPRD:00796|Vega:OTTHUMG00000032204 20 20q11-q12 hemopoietic cell kinase protein-coding HCK hemopoietic cell kinase O hematopoietic cell kinase|p59-HCK/p60-HCK|tyrosine-protein kinase HCK 20121230 -9606 3056 HCL1 - BRHC HGNC:4841 19 - hair color 1 (brown) unknown HCL1 hair color 1 (brown) O - 20110215 -9606 3057 HCL2 - RHA|RHC HGNC:4842|MIM:266300 4 4q28-q31 hair color 2 (red) unknown HCL2 hair color 2 (red) O - 20120622 -9606 3059 HCLS1 - CTTNL|HS1 HGNC:4844|MIM:601306|Ensembl:ENSG00000180353|HPRD:03199|Vega:OTTHUMG00000159409 3 3q13 hematopoietic cell-specific Lyn substrate 1 protein-coding HCLS1 hematopoietic cell-specific Lyn substrate 1 O hematopoietic lineage cell-specific protein|lckBP1|p75 20121230 -9606 3060 HCRT - NRCLP1|OX|PPOX HGNC:4847|MIM:602358|Ensembl:ENSG00000161610|HPRD:03836|Vega:OTTHUMG00000180107 17 17q21 hypocretin (orexin) neuropeptide precursor protein-coding HCRT hypocretin (orexin) neuropeptide precursor O orexin 20121230 -9606 3061 HCRTR1 - OX1R HGNC:4848|MIM:602392|Ensembl:ENSG00000121764|HPRD:03863|Vega:OTTHUMG00000003876 1 1p33 hypocretin (orexin) receptor 1 protein-coding HCRTR1 hypocretin (orexin) receptor 1 O hypocretin receptor 1|hypocretin receptor type 1|hypocretin receptor-1|orexin receptor 1|orexin receptor type 1|orexin receptor-1|ox-1-R|ox1-R 20121230 -9606 3062 HCRTR2 - OX2R HGNC:4849|MIM:602393|Ensembl:ENSG00000137252|HPRD:08374|Vega:OTTHUMG00000016150 6 6p12 hypocretin (orexin) receptor 2 protein-coding HCRTR2 hypocretin (orexin) receptor 2 O hypocretin receptor type 2|orexin receptor type 2|ox-2-R|ox2-R 20121230 -9606 3063 HCVS - - HGNC:4850|MIM:122460 15 15q11-qter human coronavirus sensitivity unknown HCVS human coronavirus sensitivity O - 20110215 -9606 3064 HTT - HD|IT15 HGNC:4851|MIM:613004|Ensembl:ENSG00000197386|HPRD:00883|Vega:OTTHUMG00000159916 4 4p16.3 huntingtin protein-coding HTT huntingtin O huntington disease protein 20121230 -9606 3065 HDAC1 RP4-811H24.2 GON-10|HD1|RPD3|RPD3L1 HGNC:4852|MIM:601241|Ensembl:ENSG00000116478|HPRD:03143|Vega:OTTHUMG00000007529 1 1p34 histone deacetylase 1 protein-coding HDAC1 histone deacetylase 1 O reduced potassium dependency, yeast homolog-like 1 20121230 -9606 3066 HDAC2 - HD2|RPD3|YAF1 HGNC:4853|MIM:605164|Ensembl:ENSG00000196591|HPRD:05521|Vega:OTTHUMG00000015411 6 6q21 histone deacetylase 2 protein-coding HDAC2 histone deacetylase 2 O YY1-associated factor 1|transcriptional regulator homolog RPD3 20121230 -9606 3067 HDC - - HGNC:4855|MIM:142704|Ensembl:ENSG00000140287|HPRD:00817|Vega:OTTHUMG00000131644 15 15q21-q22 histidine decarboxylase protein-coding HDC histidine decarboxylase O - 20121230 -9606 3068 HDGF RP11-66D17.10-003 HMG1L2 HGNC:4856|MIM:600339|Ensembl:ENSG00000143321|HPRD:02079|Vega:OTTHUMG00000041295 1 1q21-q23 hepatoma-derived growth factor protein-coding HDGF hepatoma-derived growth factor O HMG-1L2|high mobility group protein 1-like 2 20121230 -9606 3069 HDLBP - HBP|PRO2900|VGL HGNC:4857|MIM:142695|Ensembl:ENSG00000115677|HPRD:00813|Vega:OTTHUMG00000133391 2 2q37.3 high density lipoprotein binding protein protein-coding HDLBP high density lipoprotein binding protein O HDL-binding protein|high density lipoprotein-binding protein|vigilin 20121230 -9606 3070 HELLS Nbla10143 LSH|PASG|SMARCA6 HGNC:4861|MIM:603946|Ensembl:ENSG00000119969|HPRD:07232|Vega:OTTHUMG00000018793 10 10q24.2 helicase, lymphoid-specific protein-coding HELLS helicase, lymphoid-specific O SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin subfamily A member 6|SWI/SNF2-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A, member 6|lymphoid-specific helicase|proliferation-associated SNF2-like protein 20121230 -9606 3071 NCKAP1L - HEM1 HGNC:4862|MIM:141180|Ensembl:ENSG00000123338|HPRD:00781|Vega:OTTHUMG00000169843 12 12q13.1 NCK-associated protein 1-like protein-coding NCKAP1L NCK-associated protein 1-like O hematopoietic protein 1|membrane-associated protein hem-1|nck-associated protein 1-like 20121230 -9606 3073 HEXA - TSD HGNC:4878|MIM:606869|Ensembl:ENSG00000213614|HPRD:06040|Vega:OTTHUMG00000133445 15 15q24.1 hexosaminidase A (alpha polypeptide) protein-coding HEXA hexosaminidase A (alpha polypeptide) O N-acetyl-beta-glucosaminidase subunit alpha|beta-N-acetylhexosaminidase subunit alpha|beta-hexosaminidase subunit alpha|hexosaminidase subunit A 20121230 -9606 3074 HEXB HCC7 ENC-1AS HGNC:4879|MIM:606873|Ensembl:ENSG00000049860|HPRD:06043|Vega:OTTHUMG00000102057 5 5q13 hexosaminidase B (beta polypeptide) protein-coding HEXB hexosaminidase B (beta polypeptide) O HCC-7|N-acetyl-beta-glucosaminidase subunit beta|beta-N-acetylhexosaminidase subunit beta|beta-hexosaminidase subunit beta|cervical cancer proto-oncogene 7 protein|hexosaminidase subunit B 20121230 -9606 3075 CFH RP1-177P10.1 AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS HGNC:4883|MIM:134370|Ensembl:ENSG00000000971|HPRD:00601|Vega:OTTHUMG00000035607 1 1q32 complement factor H protein-coding CFH complement factor H O H factor 1 (complement)|H factor 2 (complement)|adrenomedullin binding protein|age-related maculopathy susceptibility 1|beta-1-H-globulin|beta-1H|factor H|factor H-like 1 20121230 -9606 3077 HFE - HFE1|HH|HLA-H|MVCD7|TFQTL2 HGNC:4886|MIM:613609|Ensembl:ENSG00000010704|HPRD:01993|Vega:OTTHUMG00000016348 6 6p21.3 hemochromatosis protein-coding HFE hemochromatosis O MHC class I-like protein HFE|hereditary hemochromatosis protein|hereditary hemochromatosis protein HLA-H|high Fe 20121230 -9606 3078 CFHR1 - CFHL|CFHL1|CFHL1P|CFHR1P|FHR1|H36-1|H36-2|HFL1|HFL2 HGNC:4888|MIM:134371|Ensembl:ENSG00000244414|HPRD:00602|Vega:OTTHUMG00000036276 1 1q32 complement factor H-related 1 protein-coding CFHR1 complement factor H-related 1 O FHR-1|H factor (complement)-like 1|H factor (complement)-like 2|H-factor-like 1|H36|complement factor H-related 1 pseudogene|complement factor H-related protein 1|h factor-like protein 1 20121230 -9606 3080 CFHR2 - CFHL2|FHR2|HFL3 HGNC:4890|MIM:600889|Ensembl:ENSG00000080910|HPRD:02933|Vega:OTTHUMG00000036518 1 1q31.3 complement factor H-related 2 protein-coding CFHR2 complement factor H-related 2 O DDESK59|FHR-2|H factor (complement)-like 3|complement factor H-related protein 2|factor H-related gene 2|h factor-like 3|h factor-like protein 2 20121230 -9606 3081 HGD - AKU|HGO HGNC:4892|MIM:607474|Ensembl:ENSG00000113924|HPRD:06315|Vega:OTTHUMG00000159441 3 3q13.33 homogentisate 1,2-dioxygenase protein-coding HGD homogentisate 1,2-dioxygenase O homogentisate oxidase|homogentisate oxygenase|homogentisic acid oxidase|homogentisicase 20121230 -9606 3082 HGF - DFNB39|F-TCF|HGFB|HPTA|SF HGNC:4893|MIM:142409|Ensembl:ENSG00000019991|HPRD:00799|Vega:OTTHUMG00000023804 7 7q21.1 hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding HGF hepatocyte growth factor (hepapoietin A; scatter factor) O fibroblast-derived tumor cytotoxic factor|hepatocyte growth factor|hepatopoeitin-A|hepatopoietin-A|lung fibroblast-derived mitogen 20121230 -9606 3083 HGFAC RP11-529E10.2 HGFA HGNC:4894|MIM:604552|Ensembl:ENSG00000109758|HPRD:05184|Vega:OTTHUMG00000090281 4 4p16 HGF activator protein-coding HGFAC HGF activator O hepatocyte growth factor activator 20121230 -9606 3084 NRG1 - ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|NDF|SMDF HGNC:7997|MIM:142445|Ensembl:ENSG00000157168|HPRD:00802|Vega:OTTHUMG00000163918 8 8p12 neuregulin 1 protein-coding NRG1 neuregulin 1 O MSTP131|glial growth factor|heregulin, alpha (45kD, ERBB2 p185-activator)|neu differentiation factor|neuregulin 1 type IV beta 1a|neuregulin 1 type IV beta 3|pro-NRG1|pro-neuregulin-1, membrane-bound isoform|sensory and motor neuron derived factor 20121230 -9606 3086 HHC2 - FBH|FBH2|FHH2 HGNC:4899|MIM:145981 19 19p13.3 hypocalciuric hypercalcemia 2 unknown HHC2 hypocalciuric hypercalcemia 2 O - 20120622 -9606 3087 HHEX - HEX|HMPH|HOX11L-PEN|PRH|PRHX HGNC:4901|MIM:604420|Ensembl:ENSG00000152804|HPRD:06829|Vega:OTTHUMG00000018762 10 10q23.33 hematopoietically expressed homeobox protein-coding HHEX hematopoietically expressed homeobox O hematopoietically-expressed homeobox protein HHEX|homeobox protein HEX|homeobox protein PRH|homeobox, hematopoietically expressed|proline-rich homeodomain-containing transcription factor 20121230 -9606 3090 HIC1 - ZBTB29|ZNF901|hic-1 HGNC:4909|MIM:603825|Ensembl:ENSG00000177374|HPRD:04826|Vega:OTTHUMG00000177635 17 17p13.3 hypermethylated in cancer 1 protein-coding HIC1 hypermethylated in cancer 1 O hypermethylated in cancer 1 protein|zinc finger and BTB domain-containing protein 29 20121230 -9606 3091 HIF1A - HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 HGNC:4910|MIM:603348|Ensembl:ENSG00000100644|HPRD:04517|Vega:OTTHUMG00000140344 14 14q23.2 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) protein-coding HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) O ARNT interacting protein|ARNT-interacting protein|HIF-1-alpha|PAS domain-containing protein 8|basic-helix-loop-helix-PAS protein MOP1|class E basic helix-loop-helix protein 78|hypoxia-inducible factor 1 alpha isoform I.3|hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)|hypoxia-inducible factor 1-alpha|hypoxia-inducible factor1alpha|member of PAS protein 1|member of PAS superfamily 1 20121230 -9606 3092 HIP1 - ILWEQ HGNC:4913|MIM:601767|Ensembl:ENSG00000127946|HPRD:03461|Vega:OTTHUMG00000156050 7 7q11.23 huntingtin interacting protein 1 protein-coding HIP1 huntingtin interacting protein 1 O HIP-I|huntingtin-interacting protein 1|huntingtin-interacting protein I 20121230 -9606 3093 UBE2K - E2-25K|HIP2|HYPG|LIG|UBC1 HGNC:4914|MIM:602846|Ensembl:ENSG00000078140|HPRD:04165|Vega:OTTHUMG00000160543 4 4p14 ubiquitin-conjugating enzyme E2K protein-coding UBE2K ubiquitin-conjugating enzyme E2K O E2(25K)|HIP-2|huntingtin interacting protein 2|huntingtin-interacting protein 2|ubiquitin carrier protein|ubiquitin-conjugating enzyme E2 K|ubiquitin-conjugating enzyme E2(25K)|ubiquitin-conjugating enzyme E2-25 KDA|ubiquitin-conjugating enzyme E2-25K|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)|ubiquitin-protein ligase 20121230 -9606 3094 HINT1 - HINT|NMAN|PKCI-1|PRKCNH1 HGNC:4912|MIM:601314|Ensembl:ENSG00000169567|HPRD:03204|Vega:OTTHUMG00000128995 5 5q31.2 histidine triad nucleotide binding protein 1 protein-coding HINT1 histidine triad nucleotide binding protein 1 O adenosine 5'-monophosphoramidase|histidine triad nucleotide-binding protein 1|protein kinase C inhibitor 1|protein kinase C-interacting protein 1 20121230 -9606 3096 HIVEP1 RP3-451B15.2 CIRIP|CRYBP1|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A HGNC:4920|MIM:194540|Ensembl:ENSG00000095951|HPRD:01925|Vega:OTTHUMG00000014265 6 6p24-p22.3 human immunodeficiency virus type I enhancer binding protein 1 protein-coding HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 O GAAP|HIV-EP1|Zinc finger protein 40 (Human immunodeficiency virus type I enhancer-binding protein 1) (HIV-EP1) (Major histocompatibility complex binding protein 1) (MBP-1) (Positive regulatory domain II binding factor 1) (PRDII-BF1)|cirhin interaction protein|gate keeper of apoptosis-activating protein|human immunodeficiency virus type I enhancer-binding protein 1|major histocompatibility complex binding protein 1|major histocompatibility complex-binding protein 1|positive regulatory domain II binding factor 1|positive regulatory domain II-binding factor 1|zinc finger protein 40 20121230 -9606 3097 HIVEP2 - HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B HGNC:4921|MIM:143054|Ensembl:ENSG00000010818|HPRD:00881|Vega:OTTHUMG00000015713 6 6q23-q24 human immunodeficiency virus type I enhancer binding protein 2 protein-coding HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 O MHC binding protein-2|MHC-binding protein 2|Schnurri-2|c-myc intron binding protein 1|human immunodeficiency virus type I enhancer-binding protein 2|transcription factor HIVEP2 20121230 -9606 3098 HK1 - HK1-ta|HK1-tb|HK1-tc|HKI|HXK1 HGNC:4922|MIM:142600|Ensembl:ENSG00000156515|HPRD:00809|Vega:OTTHUMG00000018380 10 10q22 hexokinase 1 protein-coding HK1 hexokinase 1 O HK I|brain form hexokinase|glycolytic enzyme|hexokinase type I|hexokinase-1 20121230 -9606 3099 HK2 - HKII|HXK2 HGNC:4923|MIM:601125|Ensembl:ENSG00000159399|HPRD:03080|Vega:OTTHUMG00000129972 2 2p13 hexokinase 2 protein-coding HK2 hexokinase 2 O HK II|hexokinase type II|hexokinase-2|hexokinase-2, muscle|muscle form hexokinase 20121230 -9606 3101 HK3 - HKIII|HXK3 HGNC:4925|MIM:142570|Ensembl:ENSG00000160883|HPRD:00806|Vega:OTTHUMG00000130855 5 5q35.2 hexokinase 3 (white cell) protein-coding HK3 hexokinase 3 (white cell) O ATP:D-hexose 6-phosphotransferase|HK III|hexokinase type III|hexokinase-3 20121230 -9606 3104 ZBTB48 RP11-58A11.4 HKR3|ZNF855|pp9964 HGNC:4930|MIM:165270|Ensembl:ENSG00000204859|HPRD:01316|Vega:OTTHUMG00000001438 1 1p36.3 zinc finger and BTB domain containing 48 protein-coding ZBTB48 zinc finger and BTB domain containing 48 O GLI-Kruppel family member HKR3|krueppel-related zinc finger protein 3|zinc finger and BTB domain-containing protein 48|zinc finger protein 855 20121230 -9606 3105 HLA-A DAQB-90C11.16-002 HLAA HGNC:4931|MIM:142800|Ensembl:ENSG00000206503|HPRD:00826|Vega:OTTHUMG00000130501 6 6p21.3 major histocompatibility complex, class I, A protein-coding HLA-A major histocompatibility complex, class I, A O HLA class I histocompatibility antigen, A-1 alpha chain|MHC class I antigen HLA-A heavy chain|antigen presenting molecule|leukocyte antigen class I-A 20121230 -9606 3106 HLA-B CDABP0067 AS|HLAB|SPDA1 HGNC:4932|MIM:142830|Ensembl:ENSG00000234745|HPRD:00828|Vega:OTTHUMG00000031153 6 6p21.3 major histocompatibility complex, class I, B protein-coding HLA-B major histocompatibility complex, class I, B O HLA class I histocompatibility antigen, B alpha chain|MHC Class I HLA heavy chain|MHC HLA-B cell surface glycoprotein|MHC HLA-B transmembrane glycoprotein|MHC class I antigen GN00104|MHC class I antigen HLA-B heavy chain|MHC class I antigen SHCHA|leukocyte antigen class I-B|lymphocyte antigen 20121230 -9606 3107 HLA-C XXbac-BCX101P6.2 D6S204|HLA-JY3|HLC-C|PSORS1 HGNC:4933|MIM:142840|Ensembl:ENSG00000204525|HPRD:00829|Vega:OTTHUMG00000031154 6 6p21.3 major histocompatibility complex, class I, C protein-coding HLA-C major histocompatibility complex, class I, C O HLA class I histocompatibility antigen, C alpha chain|HLA class I histocompatibility antigen, Cw-1 alpha chain|MHC class I antigen heavy chain HLA-C|human leukocyte antigen-C alpha chain|major histocompatibility antigen HLA-C 20121230 -9606 3108 HLA-DMA DAAP-27A1.5 D6S222E|DMA|HLADM|RING6 HGNC:4934|MIM:142855|Ensembl:ENSG00000204257|HPRD:00830|Vega:OTTHUMG00000031173 6 6p21.3 major histocompatibility complex, class II, DM alpha protein-coding HLA-DMA major histocompatibility complex, class II, DM alpha O HLA class II histocompatibility antigen, DM alpha chain|MHC class II antigen DMA|class II histocompatibility antigen, M alpha chain|really interesting new gene 6 protein 20121230 -9606 3109 HLA-DMB DAAP-27A1.4 D6S221E|RING7 HGNC:4935|MIM:142856|Ensembl:ENSG00000242574|HPRD:00831|Vega:OTTHUMG00000031176 6 6p21.3 major histocompatibility complex, class II, DM beta protein-coding HLA-DMB major histocompatibility complex, class II, DM beta O HLA class II histocompatibility antigen, DM beta chain|MHC class II HLA-DMB|MHC class II antigen DMB|MHC class II antigen HLA-DM beta chain|class II histocompatibility antigen, M beta chain|really interesting new gene 7 protein 20121230 -9606 3110 MNX1 - HB9|HLXB9|HOXHB9|SCRA1 HGNC:4979|MIM:142994|Ensembl:ENSG00000130675|HPRD:00874|Vega:OTTHUMG00000157181 7 7q36 motor neuron and pancreas homeobox 1 protein-coding MNX1 motor neuron and pancreas homeobox 1 O homeobox HB9|homeobox protein HB9|motor neuron and pancreas homeobox protein 1 20121230 -9606 3111 HLA-DOA DADB-17J1.1 HLA-DNA|HLA-DZA|HLADZ HGNC:4936|MIM:142930|Ensembl:ENSG00000204252|HPRD:00837|Vega:OTTHUMG00000031211 6 6p21.3 major histocompatibility complex, class II, DO alpha protein-coding HLA-DOA major histocompatibility complex, class II, DO alpha O HLA class II histocompatibility antigen, DO alpha chain|HLA-D0-alpha|MHC DN-alpha|MHC DZ alpha|MHC class II antigen DOA|lymphocyte antigen|major histocompatibility complex, class II, DN alpha 20121230 -9606 3112 HLA-DOB DAAP-57C1.1 DOB HGNC:4937|MIM:600629|Ensembl:ENSG00000241106|HPRD:08368|Vega:OTTHUMG00000031213 6 6p21.3 major histocompatibility complex, class II, DO beta protein-coding HLA-DOB major histocompatibility complex, class II, DO beta O HLA class II histocompatibility antigen, DO beta chain|MHC class II antigen DOB 20121230 -9606 3113 HLA-DPA1 DAAP-277G18.1 DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1 HGNC:4938|MIM:142880|Ensembl:ENSG00000231389|HPRD:00835|Vega:OTTHUMG00000031058 6 6p21.3 major histocompatibility complex, class II, DP alpha 1 protein-coding HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 O HLA class II histocompatibility antigen, DP alpha 1 chain|HLA class II histocompatibility antigen, DP alpha chain|HLA-SB alpha chain|MHC class II DP3-alpha|MHC class II DPA1|MHC class II HLA-DPA1 antigen|MHC class II antigen|Primed lymphocyte test-1 20121230 -9606 3115 HLA-DPB1 DADB-22N23.4 DPB1|HLA-DP|HLA-DP1B|HLA-DPB HGNC:4940|MIM:142858|Ensembl:ENSG00000223865|HPRD:00832|Vega:OTTHUMG00000031076 6 6p21.3 major histocompatibility complex, class II, DP beta 1 protein-coding HLA-DPB1 major histocompatibility complex, class II, DP beta 1 O HLA DP14-beta chain|HLA class II histocompatibility antigen, DP beta 1 chain|HLA class II histocompatibility antigen, DP(W4) beta chain|HLA-DP histocompatibility type, beta-1 subunit|MHC HLA DPB1|MHC class II HLA-DP-beta|MHC class II HLA-DP-beta-1|MHC class II HLA-DRB1|MHC class II antigen DP beta 1 chain|MHC class II antigen DPB1|MHC class II antigen DPbeta1|MHC class II antigen beta chain|beta1 domain MHC class II HLA DPB|class II HLA beta chain|major histocompatibility complex class II HLA DPB1 protein|major histocompatibility complex class II antigen beta chain 20121230 -9606 3116 HLA-DPB2 - DP2B|DPB2|DPbeta2|HLA-DP2B HGNC:4941 6 6p21.3 major histocompatibility complex, class II, DP beta 2 (pseudogene) pseudo HLA-DPB2 major histocompatibility complex, class II, DP beta 2 (pseudogene) O - 20121230 -9606 3117 HLA-DQA1 DAQB-109B10.1 CD|CELIAC1|DQ-A1|GSE|HLA-DQA HGNC:4942|MIM:146880|Ensembl:ENSG00000196735|HPRD:06765|Vega:OTTHUMG00000031106 6 6p21.3 major histocompatibility complex, class II, DQ alpha 1 protein-coding HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 O DC-1 alpha chain|DC-alpha|HLA class II histocompatibility antigen, DQ alpha 1 chain|HLA class II histocompatibility antigen, DQ(W3) alpha chain|HLA-DCA|MHC HLA-DQ alpha|MHC class II DQA1|MHC class II HLA-D alpha glycoprotein|MHC class II HLA-DQ-alpha-1|MHC class II antigen|MHC class II surface glycoprotein|leucocyte antigen DQA1|leukocyte antigen alpha chain 20121230 -9606 3118 HLA-DQA2 DAAP-381D23.2 DX-ALPHA|HLA-DXA HGNC:4943|MIM:613503|Ensembl:ENSG00000237541|HPRD:09982|Vega:OTTHUMG00000031108 6 6p21.3 major histocompatibility complex, class II, DQ alpha 2 protein-coding HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 O DX alpha chain|HLA class II histocompatibility antigen, DQ alpha 2 chain|HLA class II histocompatibility antigen, DQ(6) alpha chain|MHC class II DQA2 20121230 -9606 3119 HLA-DQB1 DADB-249P12.2 CELIAC1|HLA-DQB|IDDM1 HGNC:4944|MIM:604305|Ensembl:ENSG00000179344|HPRD:05054|Vega:OTTHUMG00000031124 6 6p21.3 major histocompatibility complex, class II, DQ beta 1 protein-coding HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 O HLA class II histocompatibility antigen, DQ beta 1 chain|MHC DQ beta|MHC class II DQ beta chain|MHC class II HLA-DQ beta glycoprotein|MHC class II antigen DQB1|MHC class II antigen HLA-DQ-beta-1|MHC class2 antigen|lymphocyte antigen 20121230 -9606 3120 HLA-DQB2 DAMA-367I24.2 HLA-DQB1|HLA-DXB HGNC:4945|Ensembl:ENSG00000232629|HPRD:09983|HPRD:09984|Vega:OTTHUMG00000031125 6 6p21 major histocompatibility complex, class II, DQ beta 2 protein-coding HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 O DV19.1 (major histocompatibility complex, class II, DQ beta 2 (HLA-DXB))|HLA class II histocompatibility antigen, DQ beta 2 chain|HLA class II histocompatibility antigen, DX beta chain|MHC class II antigen DQB2|major histocompatibility complex, class II, DQ beta 1 20121230 -9606 3121 HLA-DQB3 - D6S205|D6S205E|DQB3|DVB|DVbeta|HLA-DVB HGNC:4946 6 6p21.3 major histocompatibility complex, class II, DQ beta 3 protein-coding HLA-DQB3 major histocompatibility complex, class II, DQ beta 3 O - 20120710 -9606 3122 HLA-DRA DASS-397D15.1 HLA-DRA1|MLRW HGNC:4947|MIM:142860|Ensembl:ENSG00000204287|HPRD:00833|Vega:OTTHUMG00000031269 6 6p21.3 major histocompatibility complex, class II, DR alpha protein-coding HLA-DRA major histocompatibility complex, class II, DR alpha O HLA class II histocompatibility antigen, DR alpha chain|MHC cell surface glycoprotein|MHC class II antigen DRA|histocompatibility antigen HLA-DR alpha 20121230 -9606 3123 HLA-DRB1 XXbac-BPG161M6.1 DRB1|DRw10|HLA-DR1B|HLA-DRB|SS1 HGNC:4948|MIM:142857|Ensembl:ENSG00000196126|HPRD:08349|Vega:OTTHUMG00000031196 6 6p21.3 major histocompatibility complex, class II, DR beta 1 protein-coding HLA-DRB1 major histocompatibility complex, class II, DR beta 1 O DW2.2/DR2.2|HLA class II histocompatibility antigen, DR-1 beta chain|MHC class II HLA-DR beta 1 chain|MHC class II HLA-DR-beta cell surface glycoprotein|MHC class II HLA-DRw10-beta|MHC class II antigen|human leucocyte antigen DRB1|lymphocyte antigen DRB1 20121230 -9606 3124 HLA-DRB2 - HLA-DR2B HGNC:4950 6 6p21.3 major histocompatibility complex, class II, DR beta 2 (pseudogene) pseudo HLA-DRB2 major histocompatibility complex, class II, DR beta 2 (pseudogene) O - 20121102 -9606 3125 HLA-DRB3 - HLA-DR3B HGNC:4951|MIM:612735|HPRD:09985 6 6p21.3 major histocompatibility complex, class II, DR beta 3 protein-coding HLA-DRB3 major histocompatibility complex, class II, DR beta 3 O DR7|HLA class II histocompatibility antigen, DR beta 3 chain|HLA class II histocompatibility antigen, DRB1-7 beta chain|MHC class II HLA-DR beta 3 chain|MHC class II antigen DR beta 3 chain|MHC class II antigen DRB3|human leucocyte antigen DRB3 20121230 -9606 3126 HLA-DRB4 DAMC-146E17.2 DR-4|DR4|DRB4|HLA-DR4B HGNC:4952|HPRD:09986 6 6p21.3 major histocompatibility complex, class II, DR beta 4 protein-coding HLA-DRB4 major histocompatibility complex, class II, DR beta 4 O DRB1 transplantation antigen|HLA class II histocompatibility antigen, DR beta 4 chain|MHC HLA DR-beta chain|MHC class II antigen DRB4|MHC class II antigen HLA-DR-beta|MHC class2 antigen|human leucocyte antigen DRB4|leukocyte antigen 20121230 -9606 3127 HLA-DRB5 hCG_1998957 HLA-DRB HGNC:4953|MIM:604776|Ensembl:ENSG00000198502|HPRD:09209|Vega:OTTHUMG00000031027 6 6p21.3 major histocompatibility complex, class II, DR beta 5 protein-coding HLA-DRB5 major histocompatibility complex, class II, DR beta 5 O DR beta-5|DR-9|DR2-beta-2|DR9|HLA class II histocompatibility antigen, DR beta 5 chain|HLA class II histocompatibility antigen, DR-5 beta chain|HLA class II histocompatibility antigen, DRB1-9 beta chain|MHC HLA-DR-beta cell surface glycoprotein|MHC HLA-DR-beta chain|MHC class II HLA beta chain|MHC class II antigen DRB1*9|MHC class II antigen DRB5|dw2|human leucocyte antigen DRB5|leukocyte antigen class II 20121230 -9606 3128 HLA-DRB6 - - HGNC:4954 6 6p21.3 major histocompatibility complex, class II, DR beta 6 (pseudogene) pseudo HLA-DRB6 major histocompatibility complex, class II, DR beta 6 (pseudogene) O - 20121230 -9606 3129 HLA-DRB7 - - HGNC:4955 6 6p21.3 major histocompatibility complex, class II, DR beta 7 (pseudogene) pseudo HLA-DRB7 major histocompatibility complex, class II, DR beta 7 (pseudogene) O - 20121102 -9606 3130 HLA-DRB8 - - HGNC:4956 6 6p21.3 major histocompatibility complex, class II, DR beta 8 (pseudogene) pseudo HLA-DRB8 major histocompatibility complex, class II, DR beta 8 (pseudogene) O - 20121230 -9606 3131 HLF - - HGNC:4977|MIM:142385|Ensembl:ENSG00000108924|HPRD:00797|Vega:OTTHUMG00000177840 17 17q22 hepatic leukemia factor protein-coding HLF hepatic leukemia factor O - 20121230 -9606 3132 HLA-DRB9 - D6S206|D6S206E|HLA-DR1BL|HLA-DRB1L HGNC:4957 6 6p21.3 major histocompatibility complex, class II, DR beta 9 (pseudogene) pseudo HLA-DRB9 major histocompatibility complex, class II, DR beta 9 (pseudogene) O - 20121230 -9606 3133 HLA-E DAMA-277I14.1 EA1.2|EA2.1|HLA-6.2|MHC|QA1 HGNC:4962|MIM:143010|Ensembl:ENSG00000204592|HPRD:00877|Vega:OTTHUMG00000031155 6 6p21.3 major histocompatibility complex, class I, E protein-coding HLA-E major histocompatibility complex, class I, E O HLA class I histocompatibility antigen, E alpha chain|HLA class I histocompatibility antigen, alpha chain E|MHC HLA-E alpha-1|MHC HLA-E alpha-2.1|MHC class I antigen E|lymphocyte antigen 20121230 -9606 3134 HLA-F DADB-68M4.2 CDA12|HLA-5.4|HLA-CDA12|HLAF HGNC:4963|MIM:143110|Ensembl:ENSG00000204642|HPRD:00884|Vega:OTTHUMG00000031156 6 6p21.3 major histocompatibility complex, class I, F protein-coding HLA-F major histocompatibility complex, class I, F O HLA F antigen|HLA class I histocompatibility antigen, alpha chain F|HLA class I molecule|MHC class I antigen F|MHC class Ib antigen|leukocyte antigen F 20121230 -9606 3135 HLA-G DADB-15K14.8 MHC-G HGNC:4964|MIM:142871|Ensembl:ENSG00000204632|HPRD:00834|Vega:OTTHUMG00000031157 6 6p21.3 major histocompatibility complex, class I, G protein-coding HLA-G major histocompatibility complex, class I, G O HLA G antigen|HLA class I histocompatibility antigen, alpha chain G|HLA class I molecule|HLA-G histocompatibility antigen, class I, G|MHC class I antigen G|b2 microglobulin 20121230 -9606 3136 HLA-H - HLAHP HGNC:4965 6 6p21.3 major histocompatibility complex, class I, H (pseudogene) pseudo HLA-H major histocompatibility complex, class I, H (pseudogene) O - 20121230 -9606 3137 HLA-J - CDA12|D6S203|HLA-59|HLA-CDA12 HGNC:4967 6 6p21.31 major histocompatibility complex, class I, J (pseudogene) pseudo HLA-J major histocompatibility complex, class I, J (pseudogene) O - 20121230 -9606 3138 HLA-K - HLA-70|HLA70|HLAK HGNC:4969 6 6p21.3 major histocompatibility complex, class I, K (pseudogene) pseudo HLA-K major histocompatibility complex, class I, K (pseudogene) O - 20121230 -9606 3139 HLA-L hCG_23770 HLA-92|HLA92|HLAL HGNC:4970 6 6p21.3 major histocompatibility complex, class I, L (pseudogene) pseudo HLA-L major histocompatibility complex, class I, L (pseudogene) O - 20121230 -9606 3140 MR1 RP11-309G3.1 HLALS HGNC:4975|MIM:600764|Ensembl:ENSG00000153029|HPRD:09012|Vega:OTTHUMG00000035175 1 1q25.3 major histocompatibility complex, class I-related protein-coding MR1 major histocompatibility complex, class I-related O MHC class I-like antigen MR-1|MHC class I-related gene protein|MHC class-I related-gene protein|class I histocompatibility antigen-like protein|major histocompatibility complex class I-related gene protein|major histocompatibility complex, class I-like sequence 20121230 -9606 3141 HLCS - HCS HGNC:4976|MIM:609018|Ensembl:ENSG00000159267|HPRD:08360|Vega:OTTHUMG00000086636 21 21q22.13 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) O biotin apo-protein ligase|biotin--[acetyl-CoA-carboxylase] ligase|biotin--[methylcrotonoyl-CoA-carboxylase] ligase|biotin--[methylmalonyl-CoA-carboxytransferase] ligase|biotin--protein ligase|holocarboxylase synthetase (biotin-(proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)) ligase) 20121230 -9606 3142 HLX RP11-295M18.3 HB24|HLX1 HGNC:4978|MIM:142995|Ensembl:ENSG00000136630|HPRD:00875|Vega:OTTHUMG00000037352 1 1q41 H2.0-like homeobox protein-coding HLX H2.0-like homeobox O H2.0-like homeo box 1|H2.0-like homeo box-1|H2.0-like homeobox 1|H2.0-like homeobox protein|homeobox protein HB24|homeobox protein HLX1 20121230 -9606 3145 HMBS - PBG-D|PBGD|PORC|UPS HGNC:4982|MIM:609806|Ensembl:ENSG00000256269|HPRD:01440|Vega:OTTHUMG00000168295 11 11q23.3 hydroxymethylbilane synthase protein-coding HMBS hydroxymethylbilane synthase O porphobilinogen deaminase|porphyria, acute; Chester type|pre-uroporphyrinogen synthase|uroporphyrinogen I synthase|uroporphyrinogen I synthetase 20121230 -9606 3146 HMGB1 RP11-550P23.1 HMG1|HMG3|SBP-1 HGNC:4983|MIM:163905|Ensembl:ENSG00000189403|HPRD:01228|Vega:OTTHUMG00000016670 13 13q12 high mobility group box 1 protein-coding HMGB1 high mobility group box 1 O Amphoterin|HMG-1|Sulfoglucuronyl carbohydrate binding protein|high mobility group protein 1|high mobility group protein B1|high-mobility group (nonhistone chromosomal) protein 1|high-mobility group box 1 20121230 -9606 3148 HMGB2 - HMG2 HGNC:5000|MIM:163906|Ensembl:ENSG00000164104|HPRD:01229|Vega:OTTHUMG00000160799 4 4q31 high mobility group box 2 protein-coding HMGB2 high mobility group box 2 O HMG-2|high mobility group protein 2|high mobility group protein B2|high-mobility group (nonhistone chromosomal) protein 2|high-mobility group box 2 20121230 -9606 3149 HMGB3 - HMG-2a|HMG-4|HMG2A|HMG4 HGNC:5004|MIM:300193|Ensembl:ENSG00000029993|HPRD:02181|Vega:OTTHUMG00000024162 X Xq28 high mobility group box 3 protein-coding HMGB3 high mobility group box 3 O high mobility group protein 2a|high mobility group protein 4|high mobility group protein B3|high-mobility group (nonhistone chromosomal) protein 4|high-mobility group box 3|non-histone chromosomal protein 20121230 -9606 3150 HMGN1 - HMG14 HGNC:4984|MIM:163920|Ensembl:ENSG00000205581|HPRD:01231|Vega:OTTHUMG00000066178 21 21q22.2 high mobility group nucleosome binding domain 1 protein-coding HMGN1 high mobility group nucleosome binding domain 1 O high mobility group nucleosome-binding domain-containing protein 1|high-mobility group (nonhistone chromosomal) protein 14|high-mobility group nucleosome binding 1|high-mobility group nucleosome binding domain 1|non-histone chromosomal protein HMG-14|nonhistone chromosomal protein HMG-14 20121230 -9606 3151 HMGN2 - HMG17 HGNC:4986|MIM:163910|Ensembl:ENSG00000198830|HPRD:01230|Vega:OTTHUMG00000003555 1 1p36.1 high mobility group nucleosomal binding domain 2 protein-coding HMGN2 high mobility group nucleosomal binding domain 2 O high mobility group nucleosome-binding domain-containing protein 2|high mobility group protein N2|high-mobility group (nonhistone chromosomal) protein 17|high-mobility group nucleosomal binding domain 2|non-histone chromosomal protein HMG-17|nonhistone chromosomal protein HMG-17 20121230 -9606 3152 HMGN2P11 - 28H|HMG17P1|HMGN2L11 HGNC:4990 7 7q21.11 high mobility group nucleosomal binding domain 2 pseudogene 11 pseudo HMGN2P11 high mobility group nucleosomal binding domain 2 pseudogene 11 O - 20121230 -9606 3153 HMGN2P12 - 60H|HMG17P2|HMGN2L12 HGNC:4991 6 6q21 high mobility group nucleosomal binding domain 2 pseudogene 12 pseudo HMGN2P12 high mobility group nucleosomal binding domain 2 pseudogene 12 O - 20120720 -9606 3155 HMGCL - HL HGNC:5005|MIM:613898|Ensembl:ENSG00000117305|HPRD:02003|Vega:OTTHUMG00000002963 1 1p36.1-p35 3-hydroxymethyl-3-methylglutaryl-CoA lyase protein-coding HMGCL 3-hydroxymethyl-3-methylglutaryl-CoA lyase O 3-hydroxy-3-methylglutarate-CoA lyase|3-hydroxy-3-methylglutaryl-CoA lyase|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase|HMG-CoA lyase|hydroxymethylglutaricaciduria|hydroxymethylglutaryl-CoA lyase, mitochondrial|mitochondrial 3-hydroxy-3-methylglutaryl-CoA lyase 20121230 -9606 3156 HMGCR - LDLCQ3 HGNC:5006|MIM:142910|Ensembl:ENSG00000113161|HPRD:00836|Vega:OTTHUMG00000102069 5 5q13.3-q14 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase O 3-hydroxy-3-methylglutaryl CoA reductase (NADPH)|3-hydroxy-3-methylglutaryl-Coenzyme A reductase|HMG-CoA reductase|hydroxymethylglutaryl-CoA reductase 20121230 -9606 3157 HMGCS1 - HMGCS HGNC:5007|MIM:142940|Ensembl:ENSG00000112972|HPRD:07515|Vega:OTTHUMG00000162231 5 5p14-p13 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) protein-coding HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) O 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) synthase|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)|hydroxymethylglutaryl-CoA synthase, cytoplasmic 20121230 -9606 3158 HMGCS2 - - HGNC:5008|MIM:600234|Ensembl:ENSG00000134240|HPRD:02580|Vega:OTTHUMG00000012101 1 1p13-p12 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) protein-coding HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) O 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial)|HMG-CoA synthase|hydroxymethylglutaryl-CoA synthase, mitochondrial 20121230 -9606 3159 HMGA1 RP11-513I15.2 HMG-R|HMGA1A|HMGIY HGNC:5010|MIM:600701|Ensembl:ENSG00000137309|HPRD:02829|Vega:OTTHUMG00000014539 6 6p21 high mobility group AT-hook 1 protein-coding HMGA1 high mobility group AT-hook 1 O HMG-I(Y)|high mobility group protein A1|high mobility group protein HMG-I/HMG-Y|high mobility group protein R|high-mobility group (nonhistone chromosomal) protein isoforms I and Y|nonhistone chromosomal high-mobility group protein HMG-I/HMG-Y 20121230 -9606 3160 HMI - IPA|ITO HGNC:5011|MIM:300337 - - hypomelanosis of Ito unknown HMI hypomelanosis of Ito O - 20110215 -9606 3161 HMMR - CD168|IHABP|RHAMM HGNC:5012|MIM:600936|Ensembl:ENSG00000072571|HPRD:02963|Vega:OTTHUMG00000130381 5 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) protein-coding HMMR hyaluronan-mediated motility receptor (RHAMM) O hyaluronan mediated motility receptor|intracellular hyaluronic acid-binding protein|receptor for hyaluronan-mediated motility 20121230 -9606 3162 HMOX1 CTA-286B10.6 HO-1|HSP32|bK286B10 HGNC:5013|MIM:141250|Ensembl:ENSG00000100292|HPRD:00782|Vega:OTTHUMG00000150960 22 22q13.1 heme oxygenase (decycling) 1 protein-coding HMOX1 heme oxygenase (decycling) 1 O heat shock protein, 32-kD|heme oxygenase 1 20121230 -9606 3163 HMOX2 - HO-2 HGNC:5014|MIM:141251|Ensembl:ENSG00000103415|HPRD:00783|Vega:OTTHUMG00000129473 16 16p13.3 heme oxygenase (decycling) 2 protein-coding HMOX2 heme oxygenase (decycling) 2 O heme oxygenase 2 20121230 -9606 3164 NR4A1 - GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 HGNC:7980|MIM:139139|Ensembl:ENSG00000123358|HPRD:00744|Vega:OTTHUMG00000150393 12 12q13 nuclear receptor subfamily 4, group A, member 1 protein-coding NR4A1 nuclear receptor subfamily 4, group A, member 1 O ST-59|TR3 orphan receptor|early response protein NAK1|growth factor-inducible nuclear protein N10|hormone receptor|nerve growth factor IB nuclear receptor variant 1|nuclear hormone receptor NUR/77|nuclear receptor subfamily 4 group A member 1|orphan nuclear receptor HMR|orphan nuclear receptor TR3|steroid receptor TR3|testicular receptor 3 20121230 -9606 3166 HMX1 - H6|NKX5-3 HGNC:5017|MIM:142992|Ensembl:ENSG00000215612|HPRD:00873|Vega:OTTHUMG00000160012 4 4p16.1 H6 family homeobox 1 protein-coding HMX1 H6 family homeobox 1 O H6 homeodomain protein|homeobox protein H6|homeobox protein HMX1 20121230 -9606 3167 HMX2 - H6L|Nkx5-2 HGNC:5018|MIM:600647|Ensembl:ENSG00000188816|HPRD:18780|Vega:OTTHUMG00000019198 10 10q26.13 H6 family homeobox 2 protein-coding HMX2 H6 family homeobox 2 O homeo box (H6 family) 2|homeobox protein H6 family member 2|homeobox protein HMX2 20121230 -9606 3169 FOXA1 - HNF3A|TCF3A HGNC:5021|MIM:602294|Ensembl:ENSG00000129514|HPRD:03801|Vega:OTTHUMG00000140253 14 14q12-q13 forkhead box A1 protein-coding FOXA1 forkhead box A1 O HNF-3-alpha|HNF-3A|TCF-3A|forkhead box protein A1|hepatocyte nuclear factor 3-alpha|transcription factor 3A 20121230 -9606 3170 FOXA2 - HNF3B|TCF3B HGNC:5022|MIM:600288|Ensembl:ENSG00000125798|HPRD:02618|Vega:OTTHUMG00000032041 20 20p11 forkhead box A2 protein-coding FOXA2 forkhead box A2 O HNF-3-beta|HNF-3B|TCF-3B|forkhead box protein A2|hepatic nuclear factor-3-beta|hepatocyte nuclear factor 3, beta|hepatocyte nuclear factor 3-beta|transcription factor 3B 20121230 -9606 3171 FOXA3 - FKHH3|HNF3G|TCF3G HGNC:5023|MIM:602295|Ensembl:ENSG00000170608|HPRD:03802 19 19q13.2-q13.4 forkhead box A3 protein-coding FOXA3 forkhead box A3 O HNF-3-gamma|HNF-3G|TCF-3G|fork head-related protein FKH H3|forkhead box protein A3|hepatocyte nuclear factor 3, gamma|hepatocyte nuclear factor 3-gamma|transcription factor 3G 20121230 -9606 3172 HNF4A RP5-1013A22.1 HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 HGNC:5024|MIM:600281|Ensembl:ENSG00000101076|HPRD:02612|Vega:OTTHUMG00000032531 20 20q13.12 hepatocyte nuclear factor 4, alpha protein-coding HNF4A hepatocyte nuclear factor 4, alpha O HNF4alpha10/11/12|TCF-14|hepatic nuclear factor 4 alpha|hepatocyte nuclear factor 4-alpha|nuclear receptor subfamily 2 group A member 1|transcription factor 14|transcription factor HNF-4 20121230 -9606 3174 HNF4G - NR2A2|NR2A3 HGNC:5026|MIM:605966|Ensembl:ENSG00000164749|HPRD:06909|Vega:OTTHUMG00000149920 8 8q21.11 hepatocyte nuclear factor 4, gamma protein-coding HNF4G hepatocyte nuclear factor 4, gamma O HNF-4-gamma|hepatocyte nuclear factor 4-gamma|nuclear receptor subfamily 2 group A member 2 20121230 -9606 3175 ONECUT1 - HNF-6|HNF6|HNF6A HGNC:8138|MIM:604164|Ensembl:ENSG00000169856|HPRD:05002|Vega:OTTHUMG00000131899 15 15q21.3 one cut homeobox 1 protein-coding ONECUT1 one cut homeobox 1 O hepatocyte nuclear factor 6|hepatocyte nuclear factor 6, alpha|one cut domain family member 1 20121230 -9606 3176 HNMT - HMT|HNMT-S1|HNMT-S2 HGNC:5028|MIM:605238|Ensembl:ENSG00000150540|HPRD:05575|Vega:OTTHUMG00000131751 2 2q22.1 histamine N-methyltransferase protein-coding HNMT histamine N-methyltransferase O - 20121230 -9606 3177 SLC29A2 - DER12|ENT2|HNP36 HGNC:11004|MIM:602110|Ensembl:ENSG00000174669|HPRD:03662|Vega:OTTHUMG00000169056 11 11q13 solute carrier family 29 (nucleoside transporters), member 2 protein-coding SLC29A2 solute carrier family 29 (nucleoside transporters), member 2 O 36 kDa nucleolar protein HNP36|delayed-early response protein 12|equilibrative NBMPR-insensitive nucleoside transporter|equilibrative nitrobenzylmercaptopurine riboside-insensitive nucleoside transporter|equilibrative nucleoside transporter 2|hydrophobic nucleolar protein, 36 kDa|hydrophobic nucleolar protein, 36kD|nucleoside transporter, ei-type|solute carrier family 29 member 2 20121230 -9606 3178 HNRNPA1 - HNRPA1|HNRPA1L3|hnRNP A1|hnRNP-A1 HGNC:5031|MIM:164017|Ensembl:ENSG00000135486|HPRD:01242|Vega:OTTHUMG00000169702 12 12q13.1 heterogeneous nuclear ribonucleoprotein A1 protein-coding HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 O Putative heterogeneous nuclear ribonucleoprotein A1-like 3|helix-destabilizing protein|heterogeneous nuclear ribonucleoprotein A1B protein|heterogeneous nuclear ribonucleoprotein B2 protein|heterogeneous nuclear ribonucleoprotein core protein A1|hnRNP A1-like 3|hnRNP core protein A1|hnRNP core protein A1-like 3|nuclear ribonucleoprotein particle A1 protein|single-strand DNA-binding protein UP1|single-strand RNA-binding protein 20121230 -9606 3181 HNRNPA2B1 - HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|RNPA2|SNRPB1 HGNC:5033|MIM:600124|Ensembl:ENSG00000122566|HPRD:02526|Vega:OTTHUMG00000023471 7 7p15 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 O heterogeneous nuclear ribonucleoproteins A2/B1|hnRNP A2 / hnRNP B1|nuclear ribonucleoprotein particle A2 protein 20121230 -9606 3182 HNRNPAB - ABBP1|HNRPAB HGNC:5034|MIM:602688|Ensembl:ENSG00000197451|HPRD:04067|Vega:OTTHUMG00000163452 5 5q35.3 heterogeneous nuclear ribonucleoprotein A/B protein-coding HNRNPAB heterogeneous nuclear ribonucleoprotein A/B O ABBP-1|APOBEC1-binding protein 1|apobec-1 binding protein 1|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1-binding protein 1|hnRNP A/B|hnRNP type A/B protein 20121230 -9606 3183 HNRNPC - C1|C2|HNRNP|HNRPC|SNRPC HGNC:5035|MIM:164020|Ensembl:ENSG00000092199|HPRD:01243|Vega:OTTHUMG00000170757 14 14q11.2 heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) O heterogeneous nuclear ribonucleoproteins C1/C2|hnRNP C1/C2|nuclear ribonucleoprotein particle C1 protein|nuclear ribonucleoprotein particle C2 protein 20121230 -9606 3184 HNRNPD - AUF1|AUF1A|HNRPD|P37|hnRNPD0 HGNC:5036|MIM:601324|Ensembl:ENSG00000138668|HPRD:03206|Vega:OTTHUMG00000130290 4 4q21 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) protein-coding HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) O ARE-binding protein AUFI, type A|heterogeneous nuclear ribonucleoprotein D0|hnRNP D0 20121230 -9606 3185 HNRNPF - HNRPF|OK/SW-cl.23|mcs94-1 HGNC:5039|MIM:601037|Ensembl:ENSG00000169813|HPRD:03023|Vega:OTTHUMG00000018029 10 10q11.21 heterogeneous nuclear ribonucleoprotein F protein-coding HNRNPF heterogeneous nuclear ribonucleoprotein F O HnRNP F protein|nucleolin-like protein mcs94-1 20121230 -9606 3186 RBMXP1 - HNRNP-G|HNRPG HGNC:9911 6 6p12.3 RNA binding motif protein, X-linked pseudogene 1 pseudo RBMXP1 RNA binding motif protein, X-linked pseudogene 1 O - 20121230 -9606 3187 HNRNPH1 - HNRPH|HNRPH1|hnRNPH HGNC:5041|MIM:601035|Ensembl:ENSG00000169045|HPRD:03021|Vega:OTTHUMG00000130908 5 5q35.3 heterogeneous nuclear ribonucleoprotein H1 (H) protein-coding HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) O heterogeneous nuclear ribonucleoprotein H 20121230 -9606 3188 HNRNPH2 - FTP3|HNRPH'|HNRPH2|hnRNPH' HGNC:5042|MIM:300610|Ensembl:ENSG00000126945|HPRD:03022|Vega:OTTHUMG00000022029 X Xq22 heterogeneous nuclear ribonucleoprotein H2 (H') protein-coding HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H') O FTP-3|heterogeneous nuclear ribonucleoprotein H-prime|heterogeneous nuclear ribonucleoprotein H2|hnRNP H'|hnRNP H2 20121230 -9606 3189 HNRNPH3 - 2H9|HNRPH3 HGNC:5043|MIM:602324|Ensembl:ENSG00000096746|HPRD:03818|Vega:OTTHUMG00000018349 10 10q22 heterogeneous nuclear ribonucleoprotein H3 (2H9) protein-coding HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) O heterogeneous nuclear ribonucleoprotein 2H9|heterogeneous nuclear ribonucleoprotein H3|hnRNP 2H9|hnRNP H3 20121230 -9606 3190 HNRNPK RP11-575L7.1 CSBP|HNRPK|TUNP HGNC:5044|MIM:600712|Ensembl:ENSG00000165119|HPRD:02834|Vega:OTTHUMG00000020107 9 9q21.32-q21.33 heterogeneous nuclear ribonucleoprotein K protein-coding HNRNPK heterogeneous nuclear ribonucleoprotein K O dC-stretch binding protein|transformation upregulated nuclear protein 20121230 -9606 3191 HNRNPL P/OKcl.14 HNRPL|hnRNP-L HGNC:5045|MIM:603083|Ensembl:ENSG00000104824|HPRD:04360 19 19q13.2 heterogeneous nuclear ribonucleoprotein L protein-coding HNRNPL heterogeneous nuclear ribonucleoprotein L O hnRNP L 20121230 -9606 3192 HNRNPU RP11-11N7.3 HNRPU|SAF-A|U21.1|hnRNP U HGNC:5048|MIM:602869|Ensembl:ENSG00000153187|HPRD:04185|Vega:OTTHUMG00000040396 1 1q44 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) protein-coding HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) O heterogeneous nuclear ribonucleoprotein U|p120 nuclear protein|pp120|scaffold attachment factor A 20121230 -9606 3193 HOAC - ULG4 HGNC:5049 - - hypoacusis 2 (autosomal recessive) unknown HOAC hypoacusis 2 (autosomal recessive) O - 20110215 -9606 3195 TLX1 - HOX11|TCL3 HGNC:5056|MIM:186770|Ensembl:ENSG00000107807|HPRD:01728|Vega:OTTHUMG00000019341 10 10q24 T-cell leukemia homeobox 1 protein-coding TLX1 T-cell leukemia homeobox 1 O T-cell leukemia homeobox protein 1|T-cell leukemia/lymphoma protein 3|homeo box-11 (T-cell leukemia-3 associated breakpoint, homologous to Drosophila Notch)|homeobox protein Hox-11|proto-oncogene TCL-3 20121230 -9606 3196 TLX2 - HOX11L1|NCX HGNC:5057|MIM:604240|Ensembl:ENSG00000115297|HPRD:07254|Vega:OTTHUMG00000129960 2 2p13.1 T-cell leukemia homeobox 2 protein-coding TLX2 T-cell leukemia homeobox 2 O T-cell leukemia homeobox protein 2|homeo box 11-like 1|homeobox protein Hox-11L1|neural crest homeobox protein 20121230 -9606 3197 HOXA@ - HOX1@ HGNC:5098 7 7p15.2 homeobox A cluster other HOXA@ homeobox A cluster O - 20110619 -9606 3198 HOXA1 - BSAS|HOX1|HOX1F HGNC:5099|MIM:142955|Ensembl:ENSG00000105991|HPRD:00843|Vega:OTTHUMG00000023207 7 7p15.3 homeobox A1 protein-coding HOXA1 homeobox A1 O HOX A1 homeodomain protein|Hox 1.6-like protein|homeo box A1|homeobox 1F|homeobox protein Hox-1F|homeobox protein Hox-A1|lab-like protein 20121230 -9606 3199 HOXA2 - HOX1K HGNC:5103|MIM:604685|Ensembl:ENSG00000105996|HPRD:05252|Vega:OTTHUMG00000023208 7 7p15.2 homeobox A2 protein-coding HOXA2 homeobox A2 O homeobox protein Hox-1K|homeobox protein Hox-A2 20121230 -9606 3200 HOXA3 - HOX1|HOX1E HGNC:5104|MIM:142954|Ensembl:ENSG00000105997|HPRD:00842|Vega:OTTHUMG00000023209 7 7p15.2 homeobox A3 protein-coding HOXA3 homeobox A3 O Hox-1.5-like protein|homeo box 1E|homeo box A3|homeobox protein Hox-1E|homeobox protein Hox-A3 20121230 -9606 3201 HOXA4 - HOX1|HOX1D HGNC:5105|MIM:142953|Ensembl:ENSG00000197576|HPRD:00841|Vega:OTTHUMG00000023213 7 7p15.2 homeobox A4 protein-coding HOXA4 homeobox A4 O Dfd-like protein|Hox-1.4-like protein|homeo box A4|homeobox protein Hox-1.4|homeobox protein Hox-1D|homeobox protein Hox-A4 20121230 -9606 3202 HOXA5 - HOX1|HOX1.3|HOX1C HGNC:5106|MIM:142952|Ensembl:ENSG00000106004|HPRD:00840|Vega:OTTHUMG00000023214 7 7p15.2 homeobox A5 protein-coding HOXA5 homeobox A5 O homeo box 1C|homeo box A5|homeobox protein HOXA5|homeobox protein Hox-1C|homeobox protein Hox-A5 20121230 -9606 3203 HOXA6 - HOX1|HOX1.2|HOX1B HGNC:5107|MIM:142951|Ensembl:ENSG00000106006|HPRD:00839|Vega:OTTHUMG00000023216 7 7p15.2 homeobox A6 protein-coding HOXA6 homeobox A6 O homeo box 1B|homeo box A6|homeobox protein HOXA6|homeobox protein Hox-1B|homeobox protein Hox-A6 20121230 -9606 3204 HOXA7 - ANTP|HOX1|HOX1.1|HOX1A HGNC:5108|MIM:142950|Ensembl:ENSG00000122592|HPRD:00838|Vega:OTTHUMG00000023217 7 7p15.2 homeobox A7 protein-coding HOXA7 homeobox A7 O homeo box A7|homeobox protein HOX-1A|homeobox protein Hox 1.1|homeobox protein Hox-A7 20121230 -9606 3205 HOXA9 - ABD-B|HOX1|HOX1.7|HOX1G HGNC:5109|MIM:142956|Ensembl:ENSG00000078399|HPRD:00844|Vega:OTTHUMG00000023220 7 7p15.2 homeobox A9 protein-coding HOXA9 homeobox A9 O homeobox protein Hox-1G|homeobox protein Hox-A9|homeodomain protein HOXA9 20121230 -9606 3206 HOXA10 - HOX1|HOX1.8|HOX1H|PL HGNC:5100|MIM:142957|Ensembl:ENSG00000253293|HPRD:00845|Vega:OTTHUMG00000023436 7 7p15.2 homeobox A10 protein-coding HOXA10 homeobox A10 O homeo box A10|homeobox protein 1H|homeobox protein HOXA10|homeobox protein Hox-1.8|homeobox protein Hox-1H|homeobox protein Hox-A10 20121230 -9606 3207 HOXA11 - HOX1|HOX1I HGNC:5101|MIM:142958|Ensembl:ENSG00000005073|HPRD:00846|Vega:OTTHUMG00000023437 7 7p15.2 homeobox A11 protein-coding HOXA11 homeobox A11 O homeo box 1I|homeobox protein HOXA11|homeobox protein Hox-1I|homeobox protein Hox-A11 20121230 -9606 3208 HPCA - BDR2 HGNC:5144|MIM:142622|Ensembl:ENSG00000121905|HPRD:00811|Vega:OTTHUMG00000004017 1 1p35-p34.2 hippocalcin protein-coding HPCA hippocalcin O calcium-binding protein BDR-2|neuron specific calcium-binding protein hippocalcin|neuron-specific calcium-binding protein hippocalcin 20121230 -9606 3209 HOXA13 - HOX1|HOX1J HGNC:5102|MIM:142959|Ensembl:ENSG00000106031|HPRD:00847|Vega:OTTHUMG00000023438 7 7p15.2 homeobox A13 protein-coding HOXA13 homeobox A13 O homeo box 1J|homeo box A13|homeobox protein HOXA13|homeobox protein Hox-1J|homeobox protein Hox-A13|transcription factor HOXA13 20121230 -9606 3210 HOXB@ - HOX2@ HGNC:5110 17 17q21.32 homeobox B cluster other HOXB@ homeobox B cluster O - 20100721 -9606 3211 HOXB1 - HCFP3|HOX2|HOX2I|Hox-2.9 HGNC:5111|MIM:142968|Ensembl:ENSG00000120094|HPRD:00855|Vega:OTTHUMG00000159929 17 17q21.3 homeobox B1 protein-coding HOXB1 homeobox B1 O homeobox protein Hox-2I|homeobox protein Hox-B1 20121230 -9606 3212 HOXB2 - HOX2|HOX2H|Hox-2.8|K8 HGNC:5113|MIM:142967|Ensembl:ENSG00000173917|HPRD:00854|Vega:OTTHUMG00000159930 17 17q21.32 homeobox B2 protein-coding HOXB2 homeobox B2 O K8 home protein|homeo box 2H|homeo box B2|homeobox protein Hox-2.8|homeobox protein Hox-2H|homeobox protein Hox-B2 20121230 -9606 3213 HOXB3 - HOX2|HOX2G|Hox-2.7 HGNC:5114|MIM:142966|Ensembl:ENSG00000120093|HPRD:00853|Vega:OTTHUMG00000159922 17 17q21.3 homeobox B3 protein-coding HOXB3 homeobox B3 O homeo box 2G|homeo box B3|homeobox protein Hox-2.7|homeobox protein Hox-2G|homeobox protein Hox-B3 20121230 -9606 3214 HOXB4 - HOX-2.6|HOX2|HOX2F HGNC:5115|MIM:142965|Ensembl:ENSG00000182742|HPRD:07032|Vega:OTTHUMG00000159920 17 17q21.32 homeobox B4 protein-coding HOXB4 homeobox B4 O homeo box 2F|homeo box B4|homeobox protein Hox-2.6|homeobox protein Hox-2F|homeobox protein Hox-B4 20121230 -9606 3215 HOXB5 - HHO.C10|HOX2|HOX2A|HU-1|Hox2.1 HGNC:5116|MIM:142960|Ensembl:ENSG00000120075|HPRD:00848|Vega:OTTHUMG00000159913 17 17q21.3 homeobox B5 protein-coding HOXB5 homeobox B5 O homeo box 2A|homeo box B5|homeobox protein HHO.C10|homeobox protein Hox-2A|homeobox protein Hox-B5|homeobox protein Hu-1 20121230 -9606 3216 HOXB6 - HOX2|HOX2B|HU-2|Hox-2.2 HGNC:5117|MIM:142961|Ensembl:ENSG00000108511|HPRD:00849|Vega:OTTHUMG00000159912 17 17q21.3 homeobox B6 protein-coding HOXB6 homeobox B6 O homeo box 2B|homeo box B6|homeobox protein Hox-2.2|homeobox protein Hox-2B|homeobox protein Hox-B6|homeobox protein Hu-2 20121230 -9606 3217 HOXB7 - HHO.C1|HOX2|HOX2C|Hox-2.3 HGNC:5118|MIM:142962|Ensembl:ENSG00000120087|HPRD:00850|Vega:OTTHUMG00000170231 17 17q21.3 homeobox B7 protein-coding HOXB7 homeobox B7 O homeo box 2C|homeo box B7|homeo box c1 protein|homeobox protein HHO.C1|homeobox protein Hox-2C|homeobox protein Hox-B7 20121230 -9606 3218 HOXB8 - HOX2|HOX2D|Hox-2.4 HGNC:5119|MIM:142963|Ensembl:ENSG00000120068|HPRD:00851|Vega:OTTHUMG00000159904 17 17q21.3 homeobox B8 protein-coding HOXB8 homeobox B8 O homeo box 2D|homeo box B8|homeobox protein Hox-2.4|homeobox protein Hox-2D|homeobox protein Hox-B8 20121230 -9606 3219 HOXB9 - HOX-2.5|HOX2|HOX2E HGNC:5120|MIM:142964|Ensembl:ENSG00000170689|HPRD:00852|Vega:OTTHUMG00000159907 17 17q21.3 homeobox B9 protein-coding HOXB9 homeobox B9 O homeo box 2E|homeo box B9|homeobox protein Hox-2.5|homeobox protein Hox-2E|homeobox protein Hox-B9 20121230 -9606 3220 HOXC@ - HOX3@ HGNC:5121 12 12q12-q13 homeobox C cluster other HOXC@ homeobox C cluster O - 20080828 -9606 3221 HOXC4 - HOX3|HOX3E|cp19 HGNC:5126|MIM:142974|Ensembl:ENSG00000198353|HPRD:00860|Vega:OTTHUMG00000160036 12 12q13.3 homeobox C4 protein-coding HOXC4 homeobox C4 O homeo box 3E|homeo box C4|homeobox protein CP19|homeobox protein Hox-3E|homeobox protein Hox-C4 20121230 -9606 3222 HOXC5 - CP11|HOX3|HOX3D HGNC:5127|MIM:142973|Ensembl:ENSG00000172789|HPRD:00859|Vega:OTTHUMG00000160028 12 12q13.3 homeobox C5 protein-coding HOXC5 homeobox C5 O homeo box C5|homeobox protein CP11|homeobox protein Hox-3D|homeobox protein Hox-C5 20121230 -9606 3223 HOXC6 - CP25|HHO.C8|HOX3|HOX3C HGNC:5128|MIM:142972|Ensembl:ENSG00000197757|HPRD:00858|Vega:OTTHUMG00000160027 12 12q13.3 homeobox C6 protein-coding HOXC6 homeobox C6 O homeo box 3C|homeo box C6|homeo box C8 protein|homeobox protein CP25|homeobox protein HHO.C8|homeobox protein Hox-3C|homeobox protein Hox-C6 20121230 -9606 3224 HOXC8 - HOX3|HOX3A HGNC:5129|MIM:142970|Ensembl:ENSG00000037965|HPRD:00856|Vega:OTTHUMG00000160032 12 12q13.3 homeobox C8 protein-coding HOXC8 homeobox C8 O Hox-3.1, mouse, homolog of|homeo box 3A|homeo box C8|homeobox protein Hox-3A|homeobox protein Hox-C8 20121230 -9606 3225 HOXC9 - HOX3|HOX3B HGNC:5130|MIM:142971|Ensembl:ENSG00000180806|HPRD:00857|Vega:OTTHUMG00000160033 12 12q13.3 homeobox C9 protein-coding HOXC9 homeobox C9 O homeo box C9|homeobox protein Hox-3B|homeobox protein Hox-C9 20121230 -9606 3226 HOXC10 - HOX3I HGNC:5122|MIM:605560|Ensembl:ENSG00000180818|HPRD:05710|Vega:OTTHUMG00000160031 12 12q13.3 homeobox C10 protein-coding HOXC10 homeobox C10 O homeo box C10|homeobox protein Hox-3I|homeobox protein Hox-C10|homeoprotein C10 20121230 -9606 3227 HOXC11 - HOX3H HGNC:5123|MIM:605559|Ensembl:ENSG00000123388|HPRD:09275|Vega:OTTHUMG00000160011 12 12q13.3 homeobox C11 protein-coding HOXC11 homeobox C11 O homeo box C11|homeobox protein Hox-3H|homeobox protein Hox-C11 20121230 -9606 3228 HOXC12 - HOC3F|HOX3|HOX3F HGNC:5124|MIM:142975|Ensembl:ENSG00000123407|HPRD:00861|Vega:OTTHUMG00000160010 12 12q13.13 homeobox C12 protein-coding HOXC12 homeobox C12 O homeo box 3F|homeo box C12|homeobox protein Hox-3F|homeobox protein Hox-C12 20121230 -9606 3229 HOXC13 - ECTD9|HOX3|HOX3G HGNC:5125|MIM:142976|Ensembl:ENSG00000123364|HPRD:00862|Vega:OTTHUMG00000160008 12 12q13.3 homeobox C13 protein-coding HOXC13 homeobox C13 O NUP98/HOXC13|homeo box 3G|homeobox protein Hox-3G|homeobox protein Hox-C13 20121230 -9606 3230 HOXD@ - HOX4@ HGNC:5131 2 2q31.1 homeobox D cluster other HOXD@ homeobox D cluster O - 20120809 -9606 3231 HOXD1 - HOX4|HOX4G|Hox-4.7 HGNC:5132|MIM:142987|Ensembl:ENSG00000128645|HPRD:00870|Vega:OTTHUMG00000132512 2 2q31.1 homeobox D1 protein-coding HOXD1 homeobox D1 O homeo box 4G|homeo box D1|homeobox protein Hox-D1|homeobox protein Hox-GG 20121230 -9606 3232 HOXD3 - HOX1D|HOX4|HOX4A|Hox-4.1 HGNC:5137|MIM:142980|Ensembl:ENSG00000128652|HPRD:00863|Vega:OTTHUMG00000132517 2 2q31.1 homeobox D3 protein-coding HOXD3 homeobox D3 O Hox-4.1, mouse, homolog of|homeo box D3|homeobox protein Hox-4A|homeobox protein Hox-D3 20121230 -9606 3233 HOXD4 - HHO.C13|HOX-5.1|HOX4|HOX4B|Hox-4.2 HGNC:5138|MIM:142981|Ensembl:ENSG00000170166|HPRD:00864|Vega:OTTHUMG00000132515 2 2q31.1 homeobox D4 protein-coding HOXD4 homeobox D4 O Hox-4.2, mouse, homolog of homeo box X|homeobox protein HHO.C13|homeobox protein Hox-4B|homeobox protein Hox-5.1|homeobox protein Hox-D4 20121230 -9606 3234 HOXD8 - HOX4|HOX4E|HOX5.4 HGNC:5139|MIM:142985|Ensembl:ENSG00000175879|HPRD:00868|Vega:OTTHUMG00000132513 2 2q31.1 homeobox D8 protein-coding HOXD8 homeobox D8 O Hox-4.5|homeo box 4E|homeo box D8|homeobox protein 5.4|homeobox protein Hox-4E|homeobox protein Hox-5.4|homeobox protein Hox-D8 20121230 -9606 3235 HOXD9 - HOX4|HOX4C|Hox-4.3|Hox-5.2 HGNC:5140|MIM:142982|Ensembl:ENSG00000128709|HPRD:00865|Vega:OTTHUMG00000132516 2 2q31.1 homeobox D9 protein-coding HOXD9 homeobox D9 O Hox-4.3, mouse, homolog of|homeo box D9|homeobox protein Hox-4C|homeobox protein Hox-5.2|homeobox protein Hox-D9 20121230 -9606 3236 HOXD10 - HOX4|HOX4D|HOX4E|Hox-4.4 HGNC:5133|MIM:142984|Ensembl:ENSG00000128710|HPRD:00867|Vega:OTTHUMG00000132511 2 2q31.1 homeobox D10 protein-coding HOXD10 homeobox D10 O homeo box 4D|homeo box D10|homeobox protein Hox-4D|homeobox protein Hox-4E|homeobox protein Hox-D10 20121230 -9606 3237 HOXD11 - HOX4|HOX4F HGNC:5134|MIM:142986|Ensembl:ENSG00000128713|HPRD:00869|Vega:OTTHUMG00000132510 2 2q31.1 homeobox D11 protein-coding HOXD11 homeobox D11 O Hox-4.6, mouse, homolog of|homeo box 4F|homeo box D11|homeobox protein Hox-4F|homeobox protein Hox-D11 20121230 -9606 3238 HOXD12 - HOX4H HGNC:5135|MIM:142988|Ensembl:ENSG00000170178|HPRD:00871|Vega:OTTHUMG00000150358 2 2q31.1 homeobox D12 protein-coding HOXD12 homeobox D12 O Hox-4.7, mouse, homolog of|homeo box D12|homeobox protein Hox-4H|homeobox protein Hox-D12 20121230 -9606 3239 HOXD13 - BDE|BDSD|HOX4I|SPD HGNC:5136|MIM:142989|Ensembl:ENSG00000128714|HPRD:00872|Vega:OTTHUMG00000132431 2 2q31.1 homeobox D13 protein-coding HOXD13 homeobox D13 O homeo box 4I|homeo box D13|homeobox protein Hox-4I|homeobox protein Hox-D13 20121230 -9606 3240 HP - BP|HP2ALPHA2|HPA1S HGNC:5141|MIM:140100|Ensembl:ENSG00000257017|HPRD:00772|Vega:OTTHUMG00000173009 16 16q22.2 haptoglobin protein-coding HP haptoglobin O binding peptide|haptoglobin alpha(1S)-beta|haptoglobin alpha(2FS)-beta|haptoglobin, alpha polypeptide|haptoglobin, beta polypeptide|zonulin 20121230 -9606 3241 HPCAL1 - BDR1|HLP2|VILIP-3 HGNC:5145|MIM:600207|Ensembl:ENSG00000115756|HPRD:02564|Vega:OTTHUMG00000090451 2 2p25.1 hippocalcin-like 1 protein-coding HPCAL1 hippocalcin-like 1 O calcium-binding protein BDR-1|hippocalcin-like protein 1|visinin-like protein 3 20121230 -9606 3242 HPD - 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD HGNC:5147|MIM:609695|Ensembl:ENSG00000158104|HPRD:02041|Vega:OTTHUMG00000169081 12 12q24-qter 4-hydroxyphenylpyruvate dioxygenase protein-coding HPD 4-hydroxyphenylpyruvate dioxygenase O 4-hydroxyphenylpyruvic acid oxidase|glyoxalase domain containing 3 20121230 -9606 3244 HPE1 - HPEC HGNC:5149|MIM:236100 21 21q22.3 holoprosencephaly 1, alobar unknown HPE1 holoprosencephaly 1, alobar O - 20120622 -9606 3247 HPFH2 - - HGNC:5153|MIM:142335 7 7q36 hereditary persistence of fetal hemoglobin, heterocellular, Indian type unknown HPFH2 hereditary persistence of fetal hemoglobin, heterocellular, Indian type O - 20120622 -9606 3248 HPGD - 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 HGNC:5154|MIM:601688|Ensembl:ENSG00000164120|HPRD:03406|Vega:OTTHUMG00000160772 4 4q34-q35 hydroxyprostaglandin dehydrogenase 15-(NAD) protein-coding HPGD hydroxyprostaglandin dehydrogenase 15-(NAD) O 15-hydroxyprostaglandin dehydrogenase [NAD(+)]|NAD+-dependent 15-hydroxyprostaglandin dehydrogenase|prostaglandin dehydrogenase 1|short chain dehydrogenase/reductase family 36C, member 1 20121230 -9606 3249 HPN - TMPRSS1 HGNC:5155|MIM:142440|Ensembl:ENSG00000105707|HPRD:00801 19 19q11-q13.2 hepsin protein-coding HPN hepsin O serine protease hepsin|serine protease hepsin catalytic chain|serine protease hepsin non-catalytic chain|transmembrane protease serine 1|transmembrane protease, serine 1 20121230 -9606 3250 HPR - A-259H10.2|HP HGNC:5156|MIM:140210|Ensembl:ENSG00000261701|HPRD:00773|Vega:OTTHUMG00000173010 16 16q22.1 haptoglobin-related protein protein-coding HPR haptoglobin-related protein O Haptoglobin-related locus 20121230 -9606 3251 HPRT1 - HGPRT|HPRT HGNC:5157|MIM:308000|Ensembl:ENSG00000165704|HPRD:02388|Vega:OTTHUMG00000022452 X Xq26.1 hypoxanthine phosphoribosyltransferase 1 protein-coding HPRT1 hypoxanthine phosphoribosyltransferase 1 O HGPRTase|hypoxanthine-guanine phosphoribosyltransferase 20121230 -9606 3254 HPRTP2 - - HGNC:5160 5 5p13.3 hypoxanthine phosphoribosyltransferase pseudogene 2 pseudo HPRTP2 hypoxanthine phosphoribosyltransferase pseudogene 2 O - 20121230 -9606 3255 HPRTP3 - - HGNC:5161 11 11q hypoxanthine phosphoribosyltransferase pseudogene 3 pseudo HPRTP3 hypoxanthine phosphoribosyltransferase pseudogene 3 O - 20121230 -9606 3257 HPS1 RP11-439D8.1 HPS HGNC:5163|MIM:604982|Ensembl:ENSG00000107521|HPRD:05403|Vega:OTTHUMG00000018876 10 10q23.1-q23.3 Hermansky-Pudlak syndrome 1 protein-coding HPS1 Hermansky-Pudlak syndrome 1 O Hermansky-Pudlak syndrome 1 protein 20121230 -9606 3258 HPT - HPTX|HYPX HGNC:5165|MIM:307700 X Xq26-q27 hypoparathyroidism unknown HPT hypoparathyroidism O - 20120622 -9606 3259 HPV6AI1 - - HGNC:5168|MIM:604461 14 14q21.1 human papillomavirus (type 6a) integration site 1 other HPV6AI1 human papillomavirus (type 6a) integration site 1 O - 20080828 -9606 3260 HPV18I1 - D8S37|HPV18I HGNC:5166|MIM:167959 8 8q24 human papilloma virus (type 18) integration site 1 other HPV18I1 human papilloma virus (type 18) integration site 1 O - 20080828 -9606 3261 HPV18I2 - PAL2|pal2A|pal2B HGNC:5167|MIM:167960 12 12q13 human papillomavirus (type 18) integration site 2 other HPV18I2 human papillomavirus (type 18) integration site 2 O - 20100629 -9606 3262 HPVC1 - HPV18E5L|PE5L HGNC:5169|MIM:600762 7 7p11.2 human papillomavirus (type 18) E5 central sequence-like 1 miscRNA HPVC1 human papillomavirus (type 18) E5 central sequence-like 1 O - 20121230 -9606 3263 HPX - HX HGNC:5171|MIM:142290|Ensembl:ENSG00000110169|HPRD:00793|Vega:OTTHUMG00000133399 11 11p15.5-p15.4 hemopexin protein-coding HPX hemopexin O beta-1B-glycoprotein 20121230 -9606 3265 HRAS - C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|K-RAS|N-RAS|RASH1 HGNC:5173|MIM:190020|Ensembl:ENSG00000174775|HPRD:01813|Vega:OTTHUMG00000131919 11 11p15.5 v-Ha-ras Harvey rat sarcoma viral oncogene homolog protein-coding HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog O GTP- and GDP-binding peptide B|GTPase HRas|H-Ras-1|Ha-Ras1 proto-oncoprotein|Ras family small GTP binding protein H-Ras|c-has/bas p21 protein|c-ras-Ki-2 activated oncogene|p19 H-RasIDX protein|p21ras|transformation gene: oncogene HAMSV|transforming protein p21 20121230 -9606 3266 ERAS - HRAS2|HRASP HGNC:5174|MIM:300437|Ensembl:ENSG00000187682|HPRD:02339|Vega:OTTHUMG00000059533 X Xp11.23 ES cell expressed Ras protein-coding ERAS ES cell expressed Ras O E-Ras|GTPase ERas|embryonic stem cell-expressed Ras|small GTPase protein E-Ras|v-Ha-ras Harvey rat sarcoma viral oncogene homolog 2|v-Ha-ras Harvey rat sarcoma viral oncogene homolog pseudogene 20121230 -9606 3267 AGFG1 - HRB|RAB|RIP HGNC:5175|MIM:600862|Ensembl:ENSG00000173744|HPRD:02918|Vega:OTTHUMG00000133186 2 2q36.3 ArfGAP with FG repeats 1 protein-coding AGFG1 ArfGAP with FG repeats 1 O HIV-1 Rev binding protein|HIV-1 Rev-binding protein|Rab, Rev/Rex activation domain-binding protein|arf-GAP domain and FG repeat-containing protein 1|arf-GAP domain and FG repeats-containing protein 1|hRIP, Rev interacting protein|nucleoporin-like protein RIP|rev-interacting protein|rev/Rex activation domain-binding protein 20121230 -9606 3268 AGFG2 tcag7.884 HRBL|RABR HGNC:5177|MIM:604019|Ensembl:ENSG00000106351|HPRD:04932|Vega:OTTHUMG00000156029 7 7q22.1 ArfGAP with FG repeats 2 protein-coding AGFG2 ArfGAP with FG repeats 2 O HIV-1 Rev-binding protein-like protein|Rev/Rex activation domain binding protein-related|arf-GAP domain and FG repeat-containing protein 2|arf-GAP domain and FG repeats-containing protein 2|nucleoporin|rev/Rex activation domain-binding protein related 20121230 -9606 3269 HRH1 - H1-R|hisH1 HGNC:5182|MIM:600167|Ensembl:ENSG00000196639|HPRD:02544|Vega:OTTHUMG00000129719 3 3p25 histamine receptor H1 protein-coding HRH1 histamine receptor H1 O H1R|HH1R|histamine H(1) receptor|histamine H1 receptor|histamine receptor, subclass H1 20121230 -9606 3270 HRC - - HGNC:5178|MIM:142705|Ensembl:ENSG00000130528|HPRD:00818 19 19q13.3 histidine rich calcium binding protein protein-coding HRC histidine rich calcium binding protein O sarcoplasmic reticulum histidine-rich calcium-binding protein 20121230 -9606 3272 HRES1 - - HGNC:5180|MIM:143025|HPRD:15930 1 1q42 HTLV-1 related endogenous sequence unknown HRES1 HTLV-1 related endogenous sequence O - 20120710 -9606 3273 HRG - HPRG|HRGP|THPH11 HGNC:5181|MIM:142640|Ensembl:ENSG00000113905|HPRD:00812|Vega:OTTHUMG00000156578 3 3q27 histidine-rich glycoprotein protein-coding HRG histidine-rich glycoprotein O histidine-proline-rich glycoprotein 20121230 -9606 3274 HRH2 - H2R HGNC:5183|MIM:142703|Ensembl:ENSG00000113749|HPRD:00816|Vega:OTTHUMG00000130660 5 5q35.2 histamine receptor H2 protein-coding HRH2 histamine receptor H2 O HH2R|gastric receptor 1|gastric receptor I|histamine H2 receptor 20121230 -9606 3275 PRMT2 - HRMT1L1 HGNC:5186|MIM:601961|Ensembl:ENSG00000160310|HPRD:09060|Vega:OTTHUMG00000048806 21 21q22.3 protein arginine methyltransferase 2 protein-coding PRMT2 protein arginine methyltransferase 2 O HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1|HMT1 hnRNP methyltransferase-like 1|PRMT2 alpha|PRMT2 beta|PRMT2 gamma|histone-arginine N-methyltransferase PRMT2|protein arginine N-methyltransferase 2 20121230 -9606 3276 PRMT1 - ANM1|HCP1|HRMT1L2|IR1B4 HGNC:5187|MIM:602950|Ensembl:ENSG00000126457|HPRD:04257|Vega:OTTHUMG00000167568 19 19q13.3 protein arginine methyltransferase 1 protein-coding PRMT1 protein arginine methyltransferase 1 O HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 2|heterogeneous nuclear ribonucleoprotein methyltransferase 1-like 2|histone-arginine N-methyltransferase PRMT1|interferon receptor 1-bound protein 4|protein arginine N-methyltransferase 1 20121230 -9606 3278 HRPT1 - FIHP HGNC:5190|MIM:145000 1 1q25-q31 hyperparathyroidism 1 unknown HRPT1 hyperparathyroidism 1 O - 20110714 -9606 3280 HES1 - HES-1|HHL|HRY|bHLHb39 HGNC:5192|MIM:139605|Ensembl:ENSG00000114315|HPRD:00770|Vega:OTTHUMG00000155984 3 3q28-q29 hairy and enhancer of split 1, (Drosophila) protein-coding HES1 hairy and enhancer of split 1, (Drosophila) O class B basic helix-loop-helix protein 39|hairy homolog|hairy-like protein|transcription factor HES-1 20121230 -9606 3281 HSBP1 - NPC-A-13 HGNC:5203|MIM:604553|Ensembl:ENSG00000230989|HPRD:05185|Vega:OTTHUMG00000176653 16 16q23.3 heat shock factor binding protein 1 protein-coding HSBP1 heat shock factor binding protein 1 O heat shock factor-binding protein 1|nasopharyngeal carcinoma-associated antigen 13 20121230 -9606 3283 HSD3B1 RP5-920G3.4 3BETAHSD|HSD3B|HSDB3|HSDB3A|I|SDR11E1 HGNC:5217|MIM:109715|Ensembl:ENSG00000203857|HPRD:04920|Vega:OTTHUMG00000012525 1 1p13.1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 O 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1|3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type I|3-beta-HSD I|3-beta-hydroxy-5-ene steroid dehydrogenase|3-beta-hydroxy-Delta(5)-steroid dehydrogenase|delta-5-3-ketosteroid isomerase|hydroxy-delta-5-steroid dehydrogenase, 3 beta-and steroid delta-isomerase 1|progesterone reductase|short chain dehydrogenase/reductase family 11E, member 1|steroid Delta-isomerase|trophoblast antigen FDO161G 20121230 -9606 3284 HSD3B2 RP5-871G17.2 HSD3B|HSDB|SDR11E2 HGNC:5218|MIM:613890|Ensembl:ENSG00000203859|HPRD:01941|Vega:OTTHUMG00000012526 1 1p13.1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 O 3 beta-HSD type II|3 beta-hydroxysteroid dehydrogenase type II, delta 5-delta 4-isomerase type II, 3 beta-HSD type II|3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2|3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type II|3-beta-HSD II|3-beta-HSD adrenal and gonadal type|3-beta-hydroxy-5-ene steroid dehydrogenase|3-beta-hydroxy-Delta(5)-steroid dehydrogenase|delta 5-delta 4-isomerase type II|progesterone reductase|short chain dehydrogenase/reductase family 11E, member 2 20121230 -9606 3290 HSD11B1 - 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 HGNC:5208|MIM:600713|Ensembl:ENSG00000117594|HPRD:07042|Vega:OTTHUMG00000036481 1 1q32-q41 hydroxysteroid (11-beta) dehydrogenase 1 protein-coding HSD11B1 hydroxysteroid (11-beta) dehydrogenase 1 O corticosteroid 11-beta-dehydrogenase isozyme 1|short chain dehydrogenase/reductase family 26C, member 1 20121230 -9606 3291 HSD11B2 - AME|AME1|HSD11K|HSD2|SDR9C3 HGNC:5209|MIM:614232|Ensembl:ENSG00000176387|HPRD:01958|Vega:OTTHUMG00000137507 16 16q22 hydroxysteroid (11-beta) dehydrogenase 2 protein-coding HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2 O -HSD11 type II|11-DH2|11-beta-HSD2|11-beta-hydroxysteroid dehydrogenase type 2|11-beta-hydroxysteroid dehydrogenase type II|NAD-dependent 11-beta-hydroxysteroid dehydrogenase|corticosteroid 11-beta-dehydrogenase isozyme 2|short chain dehydrogenase/reductase family 9C member 3 20121230 -9606 3292 HSD17B1 - EDH17B2|EDHB17|HSD17|SDR28C1 HGNC:5210|MIM:109684|Ensembl:ENSG00000108786|HPRD:00185|Vega:OTTHUMG00000180243 17 17q11-q21 hydroxysteroid (17-beta) dehydrogenase 1 protein-coding HSD17B1 hydroxysteroid (17-beta) dehydrogenase 1 O 17-beta-HSD 1|17-beta-hydroxysteroid dehydrogenase type 1|20 alpha-hydroxysteroid dehydrogenase|20-alpha-HSD|E2DH|estradiol 17-beta-dehydrogenase 1|estradiol 17-beta-dehydrogenase-1|hydroxysteroid (17-beta) dehydrogenase 1 isoform|placental 17-beta-hydroxysteroid dehydrogenase|short chain dehydrogenase/reductase family 28CE, member 1 20121230 -9606 3293 HSD17B3 RP11-240L7.3 EDH17B3|SDR12C2 HGNC:5212|MIM:605573|Ensembl:ENSG00000130948|HPRD:05716|Vega:OTTHUMG00000020292 9 9q22 hydroxysteroid (17-beta) dehydrogenase 3 protein-coding HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 O 17-beta-HSD 3|17-beta-HSD3|17-beta-hydroxysteroid dehydrogenase type 3|short chain dehydrogenase/reductase family 12C, member 2|testicular 17-beta-hydroxysteroid dehydrogenase|testosterone 17-beta-dehydrogenase 3 20121230 -9606 3294 HSD17B2 - EDH17B2|HSD17|SDR9C2 HGNC:5211|MIM:109685|Ensembl:ENSG00000086696|HPRD:00186|Vega:OTTHUMG00000137631 16 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 protein-coding HSD17B2 hydroxysteroid (17-beta) dehydrogenase 2 O 17-beta-HSD 2|17-beta-hydroxysteroid dehydrogenase type 2|20 alpha-hydroxysteroid dehydrogenase|20-alpha-HSD|E2DH|estradiol 17-beta-dehydrogenase 2|microsomal 17-beta-hydroxysteroid dehydrogenase|short chain dehydrogenase/reductase family 9C, member 2|testosterone 17-beta-dehydrogenase 20121230 -9606 3295 HSD17B4 - DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 HGNC:5213|MIM:601860|Ensembl:ENSG00000133835|HPRD:03514|Vega:OTTHUMG00000128899 5 5q21 hydroxysteroid (17-beta) dehydrogenase 4 protein-coding HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 O 17-beta-HSD 4|17-beta-HSD IV|17-beta-hydroxysteroid dehydrogenase 4|17beta-estradiol dehydrogenase type IV|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase|D-3-hydroxyacyl-CoA dehydratase|D-bifunctional protein, peroxisomal|beta-hydroxyacyl dehydrogenase|beta-keto-reductase|multifunctional protein 2|peroxisomal multifunctional enzyme type 2|peroxisomal multifunctional protein 2|short chain dehydrogenase/reductase family 8C, member 1 20121230 -9606 3297 HSF1 - HSTF1 HGNC:5224|MIM:140580|Ensembl:ENSG00000185122|HPRD:00778|Vega:OTTHUMG00000165134 8 8q24.3 heat shock transcription factor 1 protein-coding HSF1 heat shock transcription factor 1 O HSF 1|HSTF 1|heat shock factor protein 1 20121230 -9606 3298 HSF2 - HSF 2|HSTF 2 HGNC:5225|MIM:140581|Ensembl:ENSG00000025156|HPRD:00779|Vega:OTTHUMG00000016216 6 6q22.31 heat shock transcription factor 2 protein-coding HSF2 heat shock transcription factor 2 O heat shock factor protein 2 20121230 -9606 3299 HSF4 - CTM HGNC:5227|MIM:602438|Ensembl:ENSG00000102878|HPRD:03896|Vega:OTTHUMG00000178325 16 16q21 heat shock transcription factor 4 protein-coding HSF4 heat shock transcription factor 4 O HSF 4|HSTF 4|hHSF4|heat shock factor protein 4 20121230 -9606 3300 DNAJB2 - DSMA5|HSJ-1|HSJ1|HSPF3 HGNC:5228|MIM:604139|Ensembl:ENSG00000135924|HPRD:07249|Vega:OTTHUMG00000133134 2 2q32-q34 DnaJ (Hsp40) homolog, subfamily B, member 2 protein-coding DNAJB2 DnaJ (Hsp40) homolog, subfamily B, member 2 O dnaJ homolog subfamily B member 2|dnaJ protein homolog 1|heat shock 40 kDa protein 3|heat shock protein J1|heat shock protein, neuronal DNAJ-like 1 20121230 -9606 3301 DNAJA1 RP11-54K16.1 DJ-2|DjA1|HDJ2|HSDJ|HSJ2|HSPF4|NEDD7|hDJ-2 HGNC:5229|MIM:602837|Ensembl:ENSG00000086061|HPRD:04159|Vega:OTTHUMG00000019760 9 9p13.3 DnaJ (Hsp40) homolog, subfamily A, member 1 protein-coding DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 O HSJ-2|dnaJ homolog subfamily A member 1|dnaJ protein homolog 2|heat shock 40 kDa protein 4|heat shock protein J2|heat shock protein, DNAJ-like 2|human DnaJ protein 2|neural precursor cell expressed, developmentally down-regulated 7 20121230 -9606 3303 HSPA1A DAQB-147D11.1 HSP70-1|HSP70-1A|HSP70I|HSP72|HSPA1 HGNC:5232|MIM:140550|Ensembl:ENSG00000204389|HPRD:00774|Vega:OTTHUMG00000031201 6 6p21.3 heat shock 70kDa protein 1A protein-coding HSPA1A heat shock 70kDa protein 1A O HSP70-1/HSP70-2|HSP70.1/HSP70.2|dnaK-type molecular chaperone HSP70-1|heat shock 70 kDa protein 1/2|heat shock 70 kDa protein 1A/1B|heat shock 70kD protein 1A|heat shock-induced protein 20121230 -9606 3304 HSPA1B DAAP-21F2.7 HSP70-1B|HSP70-2 HGNC:5233|MIM:603012|Ensembl:ENSG00000204388|HPRD:06784|Vega:OTTHUMG00000031202 6 6p21.3 heat shock 70kDa protein 1B protein-coding HSPA1B heat shock 70kDa protein 1B O HSP70-1/HSP70-2|HSP70.1/HSP70.2|heat shock 70 kDa protein 1/2|heat shock 70 kDa protein 1A/1B|heat shock 70kD protein 1B 20121230 -9606 3305 HSPA1L DADB-333F21.5 HSP70-1L|HSP70-HOM|HSP70T|hum70t HGNC:5234|MIM:140559|Ensembl:ENSG00000204390|HPRD:00776|Vega:OTTHUMG00000031208 6 6p21.3 heat shock 70kDa protein 1-like protein-coding HSPA1L heat shock 70kDa protein 1-like O heat shock 10kDa protein 1-like|heat shock 70 kDa protein 1-Hom|heat shock 70 kDa protein 1-like|heat shock 70 kDa protein 1L|heat shock 70kD protein-like 1 20121230 -9606 3306 HSPA2 - HSP70-2|HSP70-3 HGNC:5235|MIM:140560|Ensembl:ENSG00000126803|HPRD:07174 14 14q24.1 heat shock 70kDa protein 2 protein-coding HSPA2 heat shock 70kDa protein 2 O heat shock 70kD protein 2|heat shock-related 70 kDa protein 2 20121230 -9606 3308 HSPA4 - APG-2|HS24/P52|HSPH2|RY|hsp70|hsp70RY HGNC:5237|MIM:601113|Ensembl:ENSG00000170606|HPRD:09025|Vega:OTTHUMG00000129012 5 5q31.1 heat shock 70kDa protein 4 protein-coding HSPA4 heat shock 70kDa protein 4 O heat shock 70 kDa protein 4|heat shock 70-related protein APG-2|heat shock 70kD protein 4|heat shock protein, 110 kDa|hsp70 RY 20121230 -9606 3309 HSPA5 - BIP|GRP78|MIF2 HGNC:5238|MIM:138120|Ensembl:ENSG00000044574|HPRD:00682|Vega:OTTHUMG00000020672 9 9q33.3 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) protein-coding HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) O 78 kDa glucose-regulated protein|endoplasmic reticulum lumenal Ca(2+)-binding protein grp78|immunoglobulin heavy chain-binding protein 20121230 -9606 3310 HSPA6 - - HGNC:5239|MIM:140555|Ensembl:ENSG00000173110|HPRD:00775|Vega:OTTHUMG00000034461 1 1q23 heat shock 70kDa protein 6 (HSP70B') protein-coding HSPA6 heat shock 70kDa protein 6 (HSP70B') O heat shock 70 kDa protein 6|heat shock 70 kDa protein B'|heat shock 70kD protein 6 (HSP70B') 20121230 -9606 3311 HSPA7 - HSP70B HGNC:5240|MIM:140556 1 1q23.3 heat shock 70kDa protein 7 (HSP70B) pseudo HSPA7 heat shock 70kDa protein 7 (HSP70B) O - 20121230 -9606 3312 HSPA8 - HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP1|NIP71 HGNC:5241|MIM:600816|Ensembl:ENSG00000109971|HPRD:07205|Vega:OTTHUMG00000166030 11 11q24.1 heat shock 70kDa protein 8 protein-coding HSPA8 heat shock 70kDa protein 8 O LPS-associated protein 1|N-myristoyltransferase inhibitor protein 71|constitutive heat shock protein 70|heat shock 70kd protein 10|heat shock cognate 71 kDa protein|heat shock cognate protein 54|lipopolysaccharide-associated protein 1 20121230 -9606 3313 HSPA9 - CSA|GRP-75|GRP75|HSPA9B|MOT|MOT2|MTHSP75|PBP74 HGNC:5244|MIM:600548|Ensembl:ENSG00000113013|HPRD:02770|Vega:OTTHUMG00000129206 5 5q31.1 heat shock 70kDa protein 9 (mortalin) protein-coding HSPA9 heat shock 70kDa protein 9 (mortalin) O 75 kDa glucose-regulated protein|heat shock 70kD protein 9B|mortalin, perinuclear|mortalin-2|p66-mortalin|peptide-binding protein 74|stress-70 protein, mitochondrial 20121230 -9606 3314 HSPA8P1 - HSPAP1 HGNC:5245 X Xq24 heat shock 70kDa protein 8 pseudogene 1 pseudo HSPA8P1 heat shock 70kDa protein 8 pseudogene 1 O - 20121230 -9606 3315 HSPB1 - CMT2F|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 HGNC:5246|MIM:602195|Ensembl:ENSG00000106211|HPRD:09076|Vega:OTTHUMG00000023228 7 7q11.23 heat shock 27kDa protein 1 protein-coding HSPB1 heat shock 27kDa protein 1 O 28 kDa heat shock protein|HSP 27|estrogen-regulated 24 kDa protein|heat shock 27 kDa protein|heat shock 27kD protein 1|heat shock protein beta-1|stress-responsive protein 27 20121230 -9606 3316 HSPB2 - HSP27|Hs.78846|LOH11CR1K|MKBP HGNC:5247|MIM:602179|Ensembl:ENSG00000170276|HPRD:03712|Vega:OTTHUMG00000166886 11 11q22-q23 heat shock 27kDa protein 2 protein-coding HSPB2 heat shock 27kDa protein 2 O DMPK-binding protein|heat shock 27kD protein 2|heat shock protein beta-2|heat-shock protein beta-2 20121230 -9606 3320 HSP90AA1 - HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP2 HGNC:5253|MIM:140571|Ensembl:ENSG00000080824|HPRD:00777|Vega:OTTHUMG00000171752 14 14q32.33 heat shock protein 90kDa alpha (cytosolic), class A member 1 protein-coding HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 O HSP 86|heat shock 86 kDa|heat shock 90kD protein 1, alpha|heat shock 90kD protein 1, alpha-like 4|heat shock 90kD protein, alpha-like 4|heat shock 90kDa protein 1, alpha|heat shock protein HSP 90-alpha|renal carcinoma antigen NY-REN-38 20121230 -9606 3321 IGSF3 RP4-781D12.1 EWI-3|V8 HGNC:5950|MIM:603491|Ensembl:ENSG00000143061|HPRD:04602|Vega:OTTHUMG00000022751 1 1p13 immunoglobulin superfamily, member 3 protein-coding IGSF3 immunoglobulin superfamily, member 3 O glu-Trp-Ile EWI motif-containing protein 3|immunoglobin superfamily, member 3|immunoglobulin superfamily member 3 20121230 -9606 3322 HSP90AA3P - HSPCAL1 HGNC:5254 1 1q23.1 heat shock protein 90kDa alpha (cytosolic), class A member 3, pseudogene pseudo HSP90AA3P heat shock protein 90kDa alpha (cytosolic), class A member 3, pseudogene O - 20121230 -9606 3323 HSP90AA4P - HSP90Ad|HSPCAL2 HGNC:5255 4 4q35.2 heat shock protein 90kDa alpha (cytosolic), class A member 4, pseudogene pseudo HSP90AA4P heat shock protein 90kDa alpha (cytosolic), class A member 4, pseudogene O - 20121230 -9606 3324 HSP90AA2 - HSP90ALPHA|HSPCA|HSPCAL3 HGNC:5256|MIM:140575 11 11p14.1 heat shock protein 90kDa alpha (cytosolic), class A member 2 pseudo HSP90AA2 heat shock protein 90kDa alpha (cytosolic), class A member 2 O - 20121230 -9606 3326 HSP90AB1 RP1-302G2.1 D6S182|HSP84|HSP90B|HSPC2|HSPCB HGNC:5258|MIM:140572|Ensembl:ENSG00000096384|HPRD:06763|Vega:OTTHUMG00000014761 6 6p12 heat shock protein 90kDa alpha (cytosolic), class B member 1 protein-coding HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 O HSP90-beta|heat shock 84 kDa|heat shock 90kD protein 1, beta|heat shock protein HSP 90-beta 20121230 -9606 3327 HSP90AB3P - HSP90BC|HSPCP1 HGNC:5259 4 4q22.1 heat shock protein 90kDa alpha (cytosolic), class B member 3, pseudogene pseudo HSP90AB3P heat shock protein 90kDa alpha (cytosolic), class B member 3, pseudogene O - 20121230 -9606 3329 HSPD1 - CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 HGNC:5261|MIM:118190|Ensembl:ENSG00000144381|HPRD:00318|Vega:OTTHUMG00000154463 2 2q33.1 heat shock 60kDa protein 1 (chaperonin) protein-coding HSPD1 heat shock 60kDa protein 1 (chaperonin) O 60 kDa chaperonin|60 kDa heat shock protein, mitochondrial|P60 lymphocyte protein|chaperonin 60|heat shock protein 65|mitochondrial matrix protein P1|short heat shock protein 60 Hsp60s1 20121230 -9606 3332 HSPD1P3 - HSP60P1|HSP60P3|HSP60P4|HSPD1-7P|HSPDP1|HSPDP3|HSPDP4 HGNC:5264 8 8p23.1 heat shock 60kDa protein 1 (chaperonin) pseudogene 3 pseudo HSPD1P3 heat shock 60kDa protein 1 (chaperonin) pseudogene 3 O - 20121230 -9606 3336 HSPE1 - CPN10|EPF|GROES|HSP10 HGNC:5269|MIM:600141|Ensembl:ENSG00000115541|HPRD:02535|Vega:OTTHUMG00000132749 2 2q33.1 heat shock 10kDa protein 1 (chaperonin 10) protein-coding HSPE1 heat shock 10kDa protein 1 (chaperonin 10) O 10 kDa chaperonin|10 kDa heat shock protein, mitochondrial|chaperonin 10|early-pregnancy factor|heat shock 10kD protein 1 (chaperonin 10) 20121230 -9606 3337 DNAJB1 - HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 HGNC:5270|MIM:604572|Ensembl:ENSG00000132002|HPRD:05198 19 19p13.2 DnaJ (Hsp40) homolog, subfamily B, member 1 protein-coding DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 O DnaJ (Hsp40) homolog, subfmaily B, member 1|dnaJ homolog subfamily B member 1|dnaJ protein homolog 1|hDj-1|heat shock 40 kDa protein 1|heat shock 40kD protein 1|heat shock protein 40|human DnaJ protein 1|radial spoke 16 homolog B 20121230 -9606 3338 DNAJC4 - DANJC4|HSPF2|MCG18 HGNC:5271|MIM:604189|Ensembl:ENSG00000110011|Vega:OTTHUMG00000167792 11 11q13 DnaJ (Hsp40) homolog, subfamily C, member 4 protein-coding DNAJC4 DnaJ (Hsp40) homolog, subfamily C, member 4 O dnaJ homolog subfamily C member 4|dnaJ-like protein HSPF2|heat shock 40kD protein 2|multiple endocrine neoplasia type 1 candidate protein number 18 20121230 -9606 3339 HSPG2 RP11-132G19.2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 HGNC:5273|MIM:142461|Ensembl:ENSG00000142798|HPRD:00804|Vega:OTTHUMG00000002674 1 1p36.1-p34 heparan sulfate proteoglycan 2 protein-coding HSPG2 heparan sulfate proteoglycan 2 O basement membrane-specific heparan sulfate proteoglycan core protein|endorepellin (domain V region)|perlecan proteoglycan 20121230 -9606 3340 NDST1 - HSST|NST1 HGNC:7680|MIM:600853|Ensembl:ENSG00000070614|HPRD:02912|Vega:OTTHUMG00000163572 5 5q33.1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 protein-coding NDST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 O HSNST 1|N-HSST 1|N-heparan sulfate sulfotransferase 1|NDST-1|[Heparan sulfate]-glucosamine N-sulfotransferase 1|bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1|glucosaminyl N-deacetylase/N-sulfotransferase 1|heparan sulfate-N-deacetylase/N-sulfotransferase 20121230 -9606 3341 HTC1 - - HGNC:5277|MIM:145700 8 - hypertrichosis 1 (universalis, congenital) unknown HTC1 hypertrichosis 1 (universalis, congenital) O - 20110215 -9606 3342 HTC2 - CGH|CXINSq27.1|HCG HGNC:5278|MIM:307150 X Xq24-q27.1 hypertrichosis 2 (generalized, congenital) unknown HTC2 hypertrichosis 2 (generalized, congenital) O - 20120622 -9606 3343 HTL - HLT|LEUT HGNC:5280|MIM:151310 20 - high L-leucine transport unknown HTL high L-leucine transport O - 20120401 -9606 3344 FOXN2 - HTLF HGNC:5281|MIM:143089|Ensembl:ENSG00000170802|HPRD:00882|Vega:OTTHUMG00000129168 2 2p22-p16 forkhead box N2 protein-coding FOXN2 forkhead box N2 O forkhead box protein N2|human T-cell leukemia virus enhancer factor 20121230 -9606 3345 HTLVR - - HGNC:5282|MIM:143090 17 17q human T-cell leukemia virus (I and II) receptor protein-coding HTLVR human T-cell leukemia virus (I and II) receptor O Receptor for HTLV-1 and HTLV-2 20100721 -9606 3346 HTN1 - HIS1 HGNC:5283|MIM:142701|Ensembl:ENSG00000126550|HPRD:00814|Vega:OTTHUMG00000129397 4 4q13 histatin 1 protein-coding HTN1 histatin 1 O PPB|histatin-1|histidine-rich protein 1|post-PB protein 20121230 -9606 3347 HTN3 - HIS2|HTN2|HTN5 HGNC:5284|MIM:142702|Ensembl:ENSG00000205649|HPRD:00815|Vega:OTTHUMG00000160841 4 4q13 histatin 3 protein-coding HTN3 histatin 3 O PB|basic histidine-rich protein|histatin 5|histatin-3|histidine-rich protein 3|hst 20121230 -9606 3348 HTX2 - - HGNC:5306 - - heterotaxy 2 (autosomal dominant) unknown HTX2 heterotaxy 2 (autosomal dominant) O - 20110215 -9606 3349 HTOR - - HGNC:5285|MIM:143460 21 - 5-hydroxytryptamine (serotonin) oxygenase regulator other HTOR 5-hydroxytryptamine (serotonin) oxygenase regulator O - 20110915 -9606 3350 HTR1A - 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD HGNC:5286|MIM:109760|Ensembl:ENSG00000178394|HPRD:00190|Vega:OTTHUMG00000162279 5 5q11.2-q13 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled protein-coding HTR1A 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled O 5-HT1a receptor|5-hydroxytryptamine receptor 1A|guanine nucleotide-binding regulatory protein-coupled receptor 20121230 -9606 3351 HTR1B - 5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 HGNC:5287|MIM:182131|Ensembl:ENSG00000135312|HPRD:01634|Vega:OTTHUMG00000015066 6 6q13 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled protein-coding HTR1B 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled O 5-HT-1B|5-HT-1D-beta|5-hydroxytryptamine receptor 1B|serotonin 1D beta receptor|serotonin receptor 1B 20121230 -9606 3352 HTR1D - 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 HGNC:5289|MIM:182133|Ensembl:ENSG00000179546|HPRD:01636|Vega:OTTHUMG00000003235 1 1p36.3-p34.3 5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled protein-coding HTR1D 5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled O 5-HT-1D|5-HT-1D-alpha|5-hydroxytryptamine receptor 1D|serotonin receptor 1D 20121230 -9606 3354 HTR1E - 5-HT1E HGNC:5291|MIM:182132|Ensembl:ENSG00000168830|HPRD:01635 6 6q14-q15 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled protein-coding HTR1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled O 5-HT-1E|5-hydroxytryptamine receptor 1E|S31|serotonin receptor 1E 20121230 -9606 3355 HTR1F - 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 HGNC:5292|MIM:182134|HPRD:01637 3 3p12 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled protein-coding HTR1F 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled O 5-hydroxytryptamine receptor 1F|serotonin receptor 1F 20121230 -9606 3356 HTR2A RP11-147L20.2 5-HT2A|HTR2 HGNC:5293|MIM:182135|Ensembl:ENSG00000102468|HPRD:01638|Vega:OTTHUMG00000016881 13 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled protein-coding HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled O 5-HT-2A|5-HT2 receptor|5-hydroxytryptamine receptor 2A|serotonin 5-HT-2A receptor 20121230 -9606 3357 HTR2B - 5-HT(2B)|5-HT2B HGNC:5294|MIM:601122|Ensembl:ENSG00000135914|HPRD:03077|Vega:OTTHUMG00000133222 2 2q36.3-q37.1 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled protein-coding HTR2B 5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled O 5-HT 2B receptor|5-HT-2B|5-hydroxytryptamine 2B receptor|5-hydroxytryptamine receptor 2B|5-hydroxytryptamine receptor 2B variant b|serotonin receptor 2B 20121230 -9606 3358 HTR2C RP11-810O3.1 5-HT2C|5-HTR2C|HTR1C HGNC:5295|MIM:312861|Ensembl:ENSG00000147246|HPRD:02429|Vega:OTTHUMG00000022226 X Xq24 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled protein-coding HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled O 5-HT-1C|5-HT-2C|5-HT1C|5-hydroxytryptamine receptor 1C|5-hydroxytryptamine receptor 2C|serotonin 5-HT-2C receptor|serotonin receptor 2C 20121230 -9606 3359 HTR3A - 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 HGNC:5297|MIM:182139|Ensembl:ENSG00000166736|HPRD:08917|Vega:OTTHUMG00000160494 11 11q23.1 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic protein-coding HTR3A 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic O 5-HT3-A|5-hydroxytryptamine receptor 3|5-hydroxytryptamine receptor 3A|5HT3 serotonin receptor|serotonin receptor 3A|serotonin-gated ion channel receptor 20121230 -9606 3360 HTR4 - 5-HT4|5-HT4R HGNC:5299|MIM:602164|Ensembl:ENSG00000164270|Vega:OTTHUMG00000129931 5 5q31-q33 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled protein-coding HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled O 5-hydroxytryptamine receptor 4|cardiac 5-HT4 receptor 20121230 -9606 3361 HTR5A - 5-HT5A HGNC:5300|MIM:601305|Ensembl:ENSG00000157219|HPRD:03198|Vega:OTTHUMG00000151327 7 7q36.1 5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled protein-coding HTR5A 5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled O 5-HT-5|5-HT-5A|5-hydroxytryptamine receptor 5A|serotonin receptor 5A 20121230 -9606 3362 HTR6 - 5-HT6|5-HT6R HGNC:5301|MIM:601109|Ensembl:ENSG00000158748|HPRD:03066|Vega:OTTHUMG00000002713 1 1p36-p35 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled protein-coding HTR6 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled O 5-HT-6|5-hydroxytryptamine receptor 6|serotonin receptor 6 20121230 -9606 3363 HTR7 RP11-103A2.1 5-HT7 HGNC:5302|MIM:182137|Ensembl:ENSG00000148680|HPRD:01639|Vega:OTTHUMG00000018732 10 10q21-q24 5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled protein-coding HTR7 5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled O 5-HT-7|5-HT-X|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)|5-hydroxytryptamine receptor 7 20121230 -9606 3364 HUS1 tcag7.704 hHUS1 HGNC:5309|MIM:603760|Ensembl:ENSG00000136273|HPRD:04787|Vega:OTTHUMG00000155645 7 7p13-p12 HUS1 checkpoint homolog (S. pombe) protein-coding HUS1 HUS1 checkpoint homolog (S. pombe) O checkpoint protein HUS1|hus1+-like protein 20121230 -9606 3365 HV1S - - HGNC:5310 3|11 3 or 11p11-qter herpes simplex virus type 1 sensitivity unknown HV1S herpes simplex virus type 1 sensitivity O - 20110215 -9606 3369 HVBS7 - - HGNC:5314 18 18q11.1-q11.2 hepatitis B virus integration site 7 other HVBS7 hepatitis B virus integration site 7 O - 20100623 -9606 3370 HVBS8 - - HGNC:5315 17 17p12-p11.2 hepatitis B virus integration site 8 other HVBS8 hepatitis B virus integration site 8 O - 20080828 -9606 3371 TNC - 150-225|GMEM|GP|HXB|JI|TN|TN-C HGNC:5318|MIM:187380|Ensembl:ENSG00000041982|HPRD:01756|Vega:OTTHUMG00000021010 9 9q33 tenascin C protein-coding TNC tenascin C O GP 150-225|cytotactin|glioma-associated-extracellular matrix antigen|hexabrachion (tenascin)|myotendinous antigen|neuronectin|tenascin|tenascin-C isoform 14/AD1/16 20121230 -9606 3373 HYAL1 - HYAL-1|LUCA1|NAT6 HGNC:5320|MIM:607071|Ensembl:ENSG00000114378|HPRD:06146|Vega:OTTHUMG00000156941 3 3p21.3-p21.2 hyaluronoglucosaminidase 1 protein-coding HYAL1 hyaluronoglucosaminidase 1 O hyaluronidase-1|luCa-1|lung carcinoma protein 1|plasma hyaluronidase|tumor suppressor LUCA-1 20121230 -9606 3375 IAPP - DAP|IAP HGNC:5329|MIM:147940|Ensembl:ENSG00000121351|HPRD:01005|Vega:OTTHUMG00000169128 12 12p12.1 islet amyloid polypeptide protein-coding IAPP islet amyloid polypeptide O Islet amyloid polypeptide (diabetes-associated peptide; amylin)|amylin|diabetes-associated peptide|insulinoma amyloid peptide 20121230 -9606 3376 IARS RP11-62C3.1 IARS1|ILERS|ILRS|IRS|PRO0785 HGNC:5330|MIM:600709|Ensembl:ENSG00000196305|HPRD:02832|Vega:OTTHUMG00000020219 9 9q21 isoleucyl-tRNA synthetase protein-coding IARS isoleucyl-tRNA synthetase O isoleucine tRNA ligase 1, cytoplasmic|isoleucine--tRNA ligase, cytoplasmic|isoleucyl-tRNA synthetase, cytoplasmic 20121230 -9606 3378 IBD2 - - HGNC:5332|MIM:601458 12 12p13.2-q24.1 inflammatory bowel disease 2 unknown IBD2 inflammatory bowel disease 2 O - 20121018 -9606 3380 IBM3 - - HGNC:5338 17 17p13.1 inclusion body myopathy 3, autosomal dominant unknown IBM3 inclusion body myopathy 3, autosomal dominant O - 20110215 -9606 3381 IBSP - BNSP|BSP|BSP-II|SP-II HGNC:5341|MIM:147563|Ensembl:ENSG00000029559|HPRD:00951|Vega:OTTHUMG00000130600 4 4q21.1 integrin-binding sialoprotein protein-coding IBSP integrin-binding sialoprotein O BSP II|bone sialoprotein 2|bone sialoprotein II|cell-binding sialoprotein 20121230 -9606 3382 ICA1 - ICA69|ICAp69 HGNC:5343|MIM:147625|Ensembl:ENSG00000003147|HPRD:00971|Vega:OTTHUMG00000152008 7 7p22 islet cell autoantigen 1, 69kDa protein-coding ICA1 islet cell autoantigen 1, 69kDa O 69 kDa islet cell autoantigen|diabetes mellitus type I autoantigen|islet cell autoantigen 1|islet cell autoantigen 1 isoform|islet cell autoantigen p69|p69 20121230 -9606 3383 ICAM1 - BB2|CD54|P3.58 HGNC:5344|MIM:147840|Ensembl:ENSG00000090339|HPRD:00996|Vega:OTTHUMG00000180403 19 19p13.3-p13.2 intercellular adhesion molecule 1 protein-coding ICAM1 intercellular adhesion molecule 1 O ICAM-1|cell surface glycoprotein P3.58|intercellular adhesion molecule 1 (CD54), human rhinovirus receptor|major group rhinovirus receptor 20121230 -9606 3384 ICAM2 - CD102 HGNC:5345|MIM:146630|Ensembl:ENSG00000108622|HPRD:00888|Vega:OTTHUMG00000178865 17 17q23.3 intercellular adhesion molecule 2 protein-coding ICAM2 intercellular adhesion molecule 2 O ICAM-2 20121230 -9606 3385 ICAM3 - CD50|CDW50|ICAM-R HGNC:5346|MIM:146631|Ensembl:ENSG00000076662|HPRD:00889|Vega:OTTHUMG00000180410 19 19p13.3-p13.2 intercellular adhesion molecule 3 protein-coding ICAM3 intercellular adhesion molecule 3 O ICAM-3|intercellular adhesion molecule-3 20121230 -9606 3386 ICAM4 - CD242|LW HGNC:5347|MIM:614088|Ensembl:ENSG00000105371|HPRD:00198|Vega:OTTHUMG00000180405 19 19p13.2-cen intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) protein-coding ICAM4 intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) O CD242 antigen|LW blood group protein|Landsteiner-Wiener blood group antigen a|Landsteiner-Wiener blood group glycoprotein|intercellular adhesion molecule 4|intercellular adhesion molecule 4 (LW blood group) 20121230 -9606 3387 ICCA - FICCA HGNC:5349|MIM:602066 16 16p12-q12 infantile convulsions and paroxysmal choreoathetosis unknown ICCA infantile convulsions and paroxysmal choreoathetosis O - 20121106 -9606 3388 ICR1 - - HGNC:5352 - - ichthyosis congenita I, erythromatous lamellar ichthyosis, ichthyosiform erythroderma unknown ICR1 ichthyosis congenita I, erythromatous lamellar ichthyosis, ichthyosiform erythroderma O - 20110215 -9606 3390 ICR3 - - HGNC:5354 - - ichthyosis congenita III, vulgaris-like recessive ichthyosis unknown ICR3 ichthyosis congenita III, vulgaris-like recessive ichthyosis O - 20110215 -9606 3391 ICR4 - - HGNC:5355 - - ichthyosis congenita IV, ichthyosis-prematurity syndrome unknown ICR4 ichthyosis congenita IV, ichthyosis-prematurity syndrome O - 20110215 -9606 3394 IRF8 - H-ICSBP|ICSBP|ICSBP1|IRF-8 HGNC:5358|MIM:601565|Ensembl:ENSG00000140968|HPRD:03336|Vega:OTTHUMG00000137648 16 16q24.1 interferon regulatory factor 8 protein-coding IRF8 interferon regulatory factor 8 O interferon consensus sequence binding protein 1 20121230 -9606 3396 ICT1 - DS-1|DS1 HGNC:5359|MIM:603000|Ensembl:ENSG00000167862|HPRD:04299|Vega:OTTHUMG00000179218 17 17q25.1 immature colon carcinoma transcript 1 protein-coding ICT1 immature colon carcinoma transcript 1 O digestion substraction 1|immature colon carcinoma transcript 1 protein|peptidyl-tRNA hydrolase ICT1, mitochondrial 20121230 -9606 3397 ID1 - ID|bHLHb24 HGNC:5360|MIM:600349|Ensembl:ENSG00000125968|HPRD:08980|Vega:OTTHUMG00000032181 20 20q11 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein protein-coding ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein O DNA-binding protein inhibitor ID-1|class B basic helix-loop-helix protein 24|dJ857M17.1.2 (inhibitor of DNA binding 1, dominant negative helix-loop-helix protein)|inhibitor of differentiation 1 20121230 -9606 3398 ID2 - GIG8|ID2A|ID2H|bHLHb26 HGNC:5361|MIM:600386|Ensembl:ENSG00000115738|HPRD:02664 2 2p25 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein protein-coding ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein O DNA-binding protein inhibitor ID-2|DNA-binding protein inhibitor ID2|cell growth-inhibiting gene 8|class B basic helix-loop-helix protein 26|helix-loop-helix protein ID2|inhibitor of differentiation 2 20121230 -9606 3399 ID3 - HEIR-1|bHLHb25 HGNC:5362|MIM:600277|Ensembl:ENSG00000117318|HPRD:02608|Vega:OTTHUMG00000003229 1 1p36.13-p36.12 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein protein-coding ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein O DNA-binding protein inhibitor ID-3|ID-like protein inhibitor HLH 1R21|class B basic helix-loop-helix protein 25|helix-loop-helix protein HEIR-1 20121230 -9606 3400 ID4 - IDB4|bHLHb27 HGNC:5363|MIM:600581|Ensembl:ENSG00000172201|HPRD:08995|Vega:OTTHUMG00000014333 6 6p22.3 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding ID4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein O DNA-binding protein inhibitor ID-4|class B basic helix-loop-helix protein 27 20121230 -9606 3401 IDDM2 - IDDM|IDDM1|ILPR HGNC:5373|MIM:125852 11 11p15.5 insulin-dependent diabetes mellitus 2 unknown IDDM2 insulin-dependent diabetes mellitus 2 O - 20120622 -9606 3402 IDDM3 - - HGNC:5374|MIM:600318 15 15q26 insulin-dependent diabetes mellitus 3 unknown IDDM3 insulin-dependent diabetes mellitus 3 O - 20120622 -9606 3403 IDDM4 - - HGNC:5375|MIM:600319 11 11q13 insulin-dependent diabetes mellitus 4 unknown IDDM4 insulin-dependent diabetes mellitus 4 O - 20120622 -9606 3405 IDDM6 - - HGNC:5377|MIM:601941 18 18q21 insulin-dependent diabetes mellitus 6 unknown IDDM6 insulin-dependent diabetes mellitus 6 O - 20120622 -9606 3406 IDDM7 - - HGNC:5378|MIM:600321 2 2q31 insulin-dependent diabetes mellitus 7 unknown IDDM7 insulin-dependent diabetes mellitus 7 O - 20120622 -9606 3407 IDDM8 - - HGNC:5379|MIM:600883 6 6q27 insulin-dependent diabetes mellitus 8 unknown IDDM8 insulin-dependent diabetes mellitus 8 O - 20120622 -9606 3408 IDDM9 - - HGNC:5380 3 3q22.3-q25.1 insulin-dependent diabetes mellitus 9 unknown IDDM9 insulin-dependent diabetes mellitus 9 O - 20110215 -9606 3409 IDDM10 - - HGNC:5364|MIM:601942 10 10p11-q11 insulin-dependent diabetes mellitus 10 unknown IDDM10 insulin-dependent diabetes mellitus 10 O - 20110215 -9606 3410 IDDM11 - - HGNC:5365|MIM:601208 14 14q24.3-q31 insulin-dependent diabetes mellitus 11 unknown IDDM11 insulin-dependent diabetes mellitus 11 O - 20120622 -9606 3412 IDDM13 - - HGNC:5367|MIM:601318 2 2q34 insulin-dependent diabetes mellitus 13 unknown IDDM13 insulin-dependent diabetes mellitus 13 O - 20120622 -9606 3413 IDDM14 - - HGNC:5368 2 2q34-q35 insulin-dependent diabetes mellitus 14 unknown IDDM14 insulin-dependent diabetes mellitus 14 O - 20110215 -9606 3414 IDDM15 - - HGNC:5369|MIM:601666 6 6q21 insulin-dependent diabetes mellitus 15 unknown IDDM15 insulin-dependent diabetes mellitus 15 O - 20120622 -9606 3415 IDDM16 - - HGNC:5370 14 14q32.32-q32.33 insulin-dependent diabetes mellitus 16 unknown IDDM16 insulin-dependent diabetes mellitus 16 O - 20110215 -9606 3416 IDE RP11-366I13.1 INSULYSIN HGNC:5381|MIM:146680|Ensembl:ENSG00000119912|HPRD:00894|Vega:OTTHUMG00000018759 10 10q23-q25 insulin-degrading enzyme protein-coding IDE insulin-degrading enzyme O Abeta-degrading protease|insulin protease|insulinase 20121230 -9606 3417 IDH1 - IDCD|IDH|IDP|IDPC|PICD HGNC:5382|MIM:147700|Ensembl:ENSG00000138413|HPRD:00984|Vega:OTTHUMG00000132943 2 2q33.3 isocitrate dehydrogenase 1 (NADP+), soluble protein-coding IDH1 isocitrate dehydrogenase 1 (NADP+), soluble O NADP(+)-specific ICDH|NADP-dependent isocitrate dehydrogenase, cytosolic|NADP-dependent isocitrate dehydrogenase, peroxisomal|isocitrate dehydrogenase [NADP] cytoplasmic|oxalosuccinate decarboxylase 20121230 -9606 3418 IDH2 - D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH HGNC:5383|MIM:147650|Ensembl:ENSG00000182054|HPRD:00973|Vega:OTTHUMG00000149815 15 15q26.1 isocitrate dehydrogenase 2 (NADP+), mitochondrial protein-coding IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial O NADP(+)-specific ICDH|isocitrate dehydrogenase [NADP], mitochondrial|oxalosuccinate decarboxylase 20121230 -9606 3419 IDH3A - - HGNC:5384|MIM:601149|Ensembl:ENSG00000166411|HPRD:03094|Vega:OTTHUMG00000143732 15 15q25.1-q25.2 isocitrate dehydrogenase 3 (NAD+) alpha protein-coding IDH3A isocitrate dehydrogenase 3 (NAD+) alpha O H-IDH alpha|NAD(+)-specific ICDH subunit alpha|NAD(H)-specific isocitrate dehydrogenase alpha subunit|NAD+-specific ICDH|isocitrate dehydrogenase (NAD+) alpha chain|isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial|isocitric dehydrogenase subunit alpha 20121230 -9606 3420 IDH3B RP4-686C3.2 H-IDHB|RP46 HGNC:5385|MIM:604526|Ensembl:ENSG00000101365|HPRD:05163|Vega:OTTHUMG00000031699 20 20p13 isocitrate dehydrogenase 3 (NAD+) beta protein-coding IDH3B isocitrate dehydrogenase 3 (NAD+) beta O NAD(+)-specific ICDH subunit beta|NAD+-specific ICDH|NAD+-specific isocitrate dehydrogenase b subunit|NAD+-specific isocitrate dehydrogenase beta|isocitrate dehydrogenase [NAD] subunit beta, mitochondrial|isocitrate dehydrogenase, NAD(+)-specific, mitochondrial, beta subunit|isocitric dehydrogenase subunit beta 20121230 -9606 3421 IDH3G hCG_2004980 H-IDHG HGNC:5386|MIM:300089|Ensembl:ENSG00000067829|HPRD:02100|Vega:OTTHUMG00000024219 X Xq28 isocitrate dehydrogenase 3 (NAD+) gamma protein-coding IDH3G isocitrate dehydrogenase 3 (NAD+) gamma O IDH-gamma|NAD (H)-specific isocitrate dehydrogenase gamma subunit|NAD(+)-specific ICDH subunit gamma|NAD+-specific ICDH|isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial|isocitrate dehydrogenase, NAD(+)-specific, mitochondrial, gamma subunit|isocitric dehydrogenase subunit gamma 20121230 -9606 3422 IDI1 - IPP1|IPPI1 HGNC:5387|MIM:604055|Ensembl:ENSG00000067064|HPRD:07235|Vega:OTTHUMG00000017536 10 10p15.3 isopentenyl-diphosphate delta isomerase 1 protein-coding IDI1 isopentenyl-diphosphate delta isomerase 1 O IPP isomerase 1|isopentenyl diphosphate dimethylallyl diphosphate isomerase 1|isopentenyl pyrophosphate isomerase 1|isopentenyl-diphosphate Delta-isomerase 1 20121230 -9606 3423 IDS - MPS2|SIDS HGNC:5389|MIM:300823|Ensembl:ENSG00000010404|HPRD:02402|Vega:OTTHUMG00000022615 X Xq28 iduronate 2-sulfatase protein-coding IDS iduronate 2-sulfatase O alpha-L-iduronate sulfate sulfatase|iduronate 2-sulfatase 14 kDa chain|iduronate 2-sulfatase 42 kDa chain|idursulfase 20121230 -9606 3424 IDSP1 - IDS2 HGNC:5390 X Xq27.3-q28 iduronate 2-sulfatase pseudogene 1 pseudo IDSP1 iduronate 2-sulfatase pseudogene 1 O - 20121230 -9606 3425 IDUA - IDA|MPS1 HGNC:5391|MIM:252800|Ensembl:ENSG00000127415|HPRD:02016|Vega:OTTHUMG00000088901 4 4p16.3 iduronidase, alpha-L- protein-coding IDUA iduronidase, alpha-L- O alpha-L-iduronidase 20121230 -9606 3426 CFI - AHUS3|C3BINA|C3b-INA|FI|IF|KAF HGNC:5394|MIM:217030|Ensembl:ENSG00000205403|HPRD:01955|Vega:OTTHUMG00000161109 4 4q25 complement factor I protein-coding CFI complement factor I O C3B/C4B inactivator|C3b-inactivator|Konglutinogen-activating factor|complement component I|complement control protein factor I|complement factor I heavy chain|light chain of factor I 20121230 -9606 3428 IFI16 - IFNGIP1|PYHIN2 HGNC:5395|MIM:147586|Ensembl:ENSG00000163565|HPRD:00969|Vega:OTTHUMG00000037108 1 1q22 interferon, gamma-inducible protein 16 protein-coding IFI16 interferon, gamma-inducible protein 16 O gamma-interferon-inducible protein 16|interferon-gamma induced protein IFI 16|interferon-inducible myeloid differentiation transcriptional activator 20121230 -9606 3429 IFI27 - FAM14D|ISG12|ISG12A|P27 HGNC:5397|MIM:600009|Ensembl:ENSG00000165949|HPRD:02479|Vega:OTTHUMG00000171303 14 14q32 interferon, alpha-inducible protein 27 protein-coding IFI27 interferon, alpha-inducible protein 27 O 2310061N23Rik|ISG12(a)|interferon alpha-induced 11.5 kDa protein|interferon alpha-inducible protein 27, mitochondrial|interferon-stimulated gene 12a protein 20121230 -9606 3430 IFI35 - IFP35 HGNC:5399|MIM:600735|Ensembl:ENSG00000068079|HPRD:02844|Vega:OTTHUMG00000167720 17 17q21 interferon-induced protein 35 protein-coding IFI35 interferon-induced protein 35 O IFP 35|ifi-35|interferon-induced 35 kDa protein 20121230 -9606 3431 SP110 - IFI41|IFI75|IPR1|VODI HGNC:5401|MIM:604457|Ensembl:ENSG00000135899|HPRD:06832|Vega:OTTHUMG00000133204 2 2q37.1 SP110 nuclear body protein protein-coding SP110 SP110 nuclear body protein O interferon-induced protein 41, 30kD|interferon-induced protein 41/75|interferon-induced protein 75, 52kD|phosphoprotein 41|phosphoprotein 75|sp110 nuclear body protein|speckled 110 kDa|transcriptional coactivator Sp110 20121230 -9606 3433 IFIT2 - G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 HGNC:5409|MIM:147040|Ensembl:ENSG00000119922|HPRD:00913|Vega:OTTHUMG00000018707 10 10q23.31 interferon-induced protein with tetratricopeptide repeats 2 protein-coding IFIT2 interferon-induced protein with tetratricopeptide repeats 2 O Interferon, alpha-inducible protein (MW 54kD)|interferon-induced 54 kDa protein|interferon-induced protein 54 20121230 -9606 3434 IFIT1 RP11-168O10.1 C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561 HGNC:5407|MIM:147690|Ensembl:ENSG00000185745|HPRD:00983|Vega:OTTHUMG00000018712 10 10q23.31 interferon-induced protein with tetratricopeptide repeats 1 protein-coding IFIT1 interferon-induced protein with tetratricopeptide repeats 1 O interferon, alpha-inducible protein (MW 56kD)|interferon-induced 56 kDa protein|interferon-inducible mRNA 561 20121230 -9606 3437 IFIT3 RP11-149I23.4 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G HGNC:5411|MIM:604650|Ensembl:ENSG00000119917|HPRD:05228|Vega:OTTHUMG00000018708 10 10q24 interferon-induced protein with tetratricopeptide repeats 3 protein-coding IFIT3 interferon-induced protein with tetratricopeptide repeats 3 O CIG49|IFI-60K|IFIT-3|IFIT-4|ISG-60|interferon-induced 60 kDa protein|interferon-induced protein with tetratricopeptide repeats 4|retinoic acid-induced gene G protein 20121230 -9606 3438 IFN1@ - IFNA HGNC:5415 9 9p22 interferon, type 1, cluster other IFN1@ interferon, type 1, cluster O - 20120902 -9606 3439 IFNA1 - IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@ HGNC:5417|MIM:147660|Ensembl:ENSG00000197919|HPRD:00974|Vega:OTTHUMG00000019673 9 9p22 interferon, alpha 1 protein-coding IFNA1 interferon, alpha 1 O IFN-alpha 1b|IFN-alpha-1/13|interferon alpha 1b|interferon alpha-1/13|interferon alpha-D|interferon-alpha1|leIF D 20121230 -9606 3440 IFNA2 RP11-354P17.2 IFN-alphaA|IFNA|IFNA2B|INFA2 HGNC:5423|MIM:147562|Ensembl:ENSG00000188379|HPRD:00950|Vega:OTTHUMG00000019674 9 9p22 interferon, alpha 2 protein-coding IFNA2 interferon, alpha 2 O IFN-alpha-2|alpha-2a interferon|interferon alpha 2a|interferon alpha 2b|interferon alpha A|interferon alpha-2|leIF A 20121230 -9606 3441 IFNA4 - IFN-alpha4a|INFA4 HGNC:5425|MIM:147564|Ensembl:ENSG00000236637|HPRD:00952|Vega:OTTHUMG00000019660 9 9p22 interferon, alpha 4 protein-coding IFNA4 interferon, alpha 4 O IFN-alpha-4|interferon alpha-4|interferon alpha-4B|interferon alpha-76|interferon alpha-M1 20121230 -9606 3442 IFNA5 RP11-380P16.5 IFN-alphaG|INFA5 HGNC:5426|MIM:147565|Ensembl:ENSG00000147873|HPRD:00953|Vega:OTTHUMG00000019664 9 9p22 interferon, alpha 5 protein-coding IFNA5 interferon, alpha 5 O IFN-alpha-5|interferon alpha-5|interferon alpha-61|interferon alpha-G|leIF G 20121230 -9606 3443 IFNA6 RP11-354P17.7 IFN-alphaK HGNC:5427|MIM:147566|Ensembl:ENSG00000120235|HPRD:00954|Vega:OTTHUMG00000019676 9 9p22 interferon, alpha 6 protein-coding IFNA6 interferon, alpha 6 O IFN-alpha-6|interferon alpha-54|interferon alpha-6|interferon alpha-K|leIF K 20121230 -9606 3444 IFNA7 - IFN-alphaJ|IFNA-J HGNC:5428|MIM:147567|Ensembl:ENSG00000214042|HPRD:08857|Vega:OTTHUMG00000019662 9 9p22 interferon, alpha 7 protein-coding IFNA7 interferon, alpha 7 O IFN-alpha 7|IFN-alpha-7|IFN-alpha-J1|interferon alpha-7|interferon alpha-J|interferon alpha-J1|leIF J 20121230 -9606 3445 IFNA8 RP11-354P17.14-001 IFN-alphaB HGNC:5429|MIM:147568|Ensembl:ENSG00000120242|HPRD:00955|Vega:OTTHUMG00000019677 9 9p22 interferon, alpha 8 protein-coding IFNA8 interferon, alpha 8 O IFN-alpha-8|interferon alpha type 201|interferon alpha-8|interferon alpha-B|interferon alpha-B'|interferon alpha-B2|leIF B 20121230 -9606 3446 IFNA10 - IFN-alphaC HGNC:5418|MIM:147577|Ensembl:ENSG00000186803|HPRD:00963|Vega:OTTHUMG00000019658 9 9p22 interferon, alpha 10 protein-coding IFNA10 interferon, alpha 10 O IFN-alpha-10|interferon alpha-10|interferon alpha-6L|interferon alpha-C|leIF C 20121230 -9606 3447 IFNA13 - - HGNC:5419|MIM:147578|Ensembl:ENSG00000233816|HPRD:00964|Vega:OTTHUMG00000019675 9 9p22 interferon, alpha 13 protein-coding IFNA13 interferon, alpha 13 O IFN-alpha-1/13|interferon alpha-1/13|interferon alpha-D|leIF D 20121230 -9606 3448 IFNA14 - IFN-alphaH|LEIF2H HGNC:5420|MIM:147579|Ensembl:ENSG00000228083|HPRD:00965|Vega:OTTHUMG00000019665 9 9p22 interferon, alpha 14 protein-coding IFNA14 interferon, alpha 14 O IFN-alpha-14|interferon alpha-14|interferon alpha-H|interferon lambda-2-H|leIF H 20121230 -9606 3449 IFNA16 - IFN-alphaO HGNC:5421|MIM:147580|Ensembl:ENSG00000147885|HPRD:00966|Vega:OTTHUMG00000019663 9 9p22 interferon, alpha 16 protein-coding IFNA16 interferon, alpha 16 O IFN-alpha-16|IFN-alpha-N-protein|interferon alpha-16|interferon alpha-WA 20121230 -9606 3451 IFNA17 RP11-380P16.10-001 IFN-alphaI|IFNA|INFA|LEIF2C1 HGNC:5422|MIM:147583|Ensembl:ENSG00000234829|HPRD:00967|Vega:OTTHUMG00000019667 9 9p22 interferon, alpha 17 protein-coding IFNA17 interferon, alpha 17 O IFN-alpha-17|interferon alpha-17|interferon alpha-88|interferon alpha-I'|interferon alpha-T|interferon alpha-WA|leIF I 20121230 -9606 3452 IFNA21 - IFN-alphaI|LeIF F|leIF-F HGNC:5424|MIM:147584|Ensembl:ENSG00000137080|HPRD:00968|Vega:OTTHUMG00000019653 9 9p22 interferon, alpha 21 protein-coding IFNA21 interferon, alpha 21 O IFN-alpha-21|interferon alpha-21|interferon alpha-F|leukocyte interferon protein 20121230 -9606 3453 IFNA22P - IFNAP22 HGNC:5431 9 9p22 interferon, alpha 22, pseudogene pseudo IFNA22P interferon, alpha 22, pseudogene O - 20121230 -9606 3454 IFNAR1 - AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC HGNC:5432|MIM:107450|Ensembl:ENSG00000142166|HPRD:00126|Vega:OTTHUMG00000065126 21 21q22.11 interferon (alpha, beta and omega) receptor 1 protein-coding IFNAR1 interferon (alpha, beta and omega) receptor 1 O CRF2-1|IFN-R-1|IFN-alpha/beta receptor 1|alpha-type antiviral protein|beta-type antiviral protein|cytokine receptor class-II member 1|cytokine receptor family 2 member 1|interferon alpha/beta receptor 1|interferon-alpha/beta receptor alpha chain|interferon-beta receptor 1|type I interferon receptor 1 20121230 -9606 3455 IFNAR2 - IFN-R|IFN-alpha-REC|IFNABR|IFNARB HGNC:5433|MIM:602376|Ensembl:ENSG00000159110|HPRD:03850|Vega:OTTHUMG00000065127 21 21q22.11 interferon (alpha, beta and omega) receptor 2 protein-coding IFNAR2 interferon (alpha, beta and omega) receptor 2 O IFN-R-2|IFN-alpha binding protein|IFN-alpha/beta receptor 2|human interferon alpha/beta receptor|interferon alpha binding protein|interferon alpha/beta receptor 2|interferon-alpha/beta receptor beta chain|type I interferon receptor 2 20121230 -9606 3456 IFNB1 RP11-113D19.1 IFB|IFF|IFNB HGNC:5434|MIM:147640|Ensembl:ENSG00000171855|HPRD:00972|Vega:OTTHUMG00000019652 9 9p21 interferon, beta 1, fibroblast protein-coding IFNB1 interferon, beta 1, fibroblast O IFN-beta|fibroblast interferon|interferon beta 20121230 -9606 3458 IFNG - IFG|IFI HGNC:5438|MIM:147570|Ensembl:ENSG00000111537|HPRD:00957|Vega:OTTHUMG00000169113 12 12q14 interferon, gamma protein-coding IFNG interferon, gamma O IFN-gamma|immune interferon|interferon gamma 20121230 -9606 3459 IFNGR1 RP3-503F13.3 CD119|IFNGR HGNC:5439|MIM:107470|Ensembl:ENSG00000027697|HPRD:00127|Vega:OTTHUMG00000015656 6 6q23.3 interferon gamma receptor 1 protein-coding IFNGR1 interferon gamma receptor 1 O AVP, type 2|CD119 antigen|CDw119|IFN-gamma receptor 1|IFN-gamma-R1|antiviral protein, type 2|immune interferon receptor 1|interferon-gamma receptor alpha chain 20121230 -9606 3460 IFNGR2 - AF-1|IFGR2|IFNGT1 HGNC:5440|MIM:147569|Ensembl:ENSG00000159128|HPRD:00956|Vega:OTTHUMG00000065188 21 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) protein-coding IFNGR2 interferon gamma receptor 2 (interferon gamma transducer 1) O IFN-gamma receptor 2|IFN-gamma-R2|interferon gamma receptor 2|interferon gamma receptor accessory factor 1|interferon gamma receptor accessory factor-1|interferon gamma receptor beta chain|interferon gamma transducer 1 20121230 -9606 3461 IFNA11P - IFNP11 HGNC:5442 9 9p21.3 interferon, alpha 11, pseudogene pseudo IFNA11P interferon, alpha 11, pseudogene O - 20121230 -9606 3463 IFNA20P - IFNP20 HGNC:5444 9 9p21.3 interferon, alpha 20, pseudogene pseudo IFNA20P interferon, alpha 20, pseudogene O - 20121230 -9606 3466 IFNR - IFNGM|IFNGM2 HGNC:5447|MIM:147573 16 - interferon production regulator unknown IFNR interferon production regulator O - 20121209 -9606 3467 IFNW1 - - HGNC:5448|MIM:147553|Ensembl:ENSG00000177047|HPRD:00944|Vega:OTTHUMG00000019656 9 9p22 interferon, omega 1 protein-coding IFNW1 interferon, omega 1 O IFN-omega 1, interferon omega-1|interferon alpha-II-1|interferon omega-1 20121230 -9606 3474 IFNWP19 - - HGNC:5451 9 9p22 interferon, omega 1 pseudogene 19 pseudo IFNWP19 interferon, omega 1 pseudogene 19 O - 20121230 -9606 3475 IFRD1 - PC4|TIS7 HGNC:5456|MIM:603502|Ensembl:ENSG00000006652|HPRD:04612|Vega:OTTHUMG00000155124 7 7q31.1 interferon-related developmental regulator 1 protein-coding IFRD1 interferon-related developmental regulator 1 O 12-O-tetradecanoylphorbol-13-acetate-induced sequence 7|TPA induced sequence 7|nerve growth factor-inducible protein PC4|pheochromocytoma cell-4 20121230 -9606 3476 IGBP1 RP13-46G5.1 ALPHA-4|IBP1 HGNC:5461|MIM:300139|Ensembl:ENSG00000089289|HPRD:02140|Vega:OTTHUMG00000021767 X Xq13.1-q13.3 immunoglobulin (CD79A) binding protein 1 protein-coding IGBP1 immunoglobulin (CD79A) binding protein 1 O B cell signal transduction molecule alpha 4|B-cell signal transduction molecule alpha 4|CD79a-binding protein 1|bA351K23.1 (immunoglobulin binding protein 1 (CD79A) )|immunoglobulin-binding protein 1|protein alpha-4|protein phosphatase 2/4/6 regulatory subunit|protein phosphatase 2A, regulatory subunit alpha-4|renal carcinoma antigen NY-REN-16 20121230 -9606 3478 IGES - - HGNC:5463|MIM:147061 5 5q31.1 immunoglobulin E concentration, serum unknown IGES immunoglobulin E concentration, serum O - 20120622 -9606 3479 IGF1 - IGF-I|IGF1A|IGFI HGNC:5464|MIM:147440|Ensembl:ENSG00000017427|HPRD:00936|Vega:OTTHUMG00000149910 12 12q23.2 insulin-like growth factor 1 (somatomedin C) protein-coding IGF1 insulin-like growth factor 1 (somatomedin C) O IGF-IA|IGF-IB|MGF|insulin-like growth factor 1|insulin-like growth factor I|insulin-like growth factor IA|insulin-like growth factor IB|mechano growth factor|somatomedin-C 20121230 -9606 3480 IGF1R - CD221|IGFIR|IGFR|JTK13 HGNC:5465|MIM:147370|Ensembl:ENSG00000140443|HPRD:00932|Vega:OTTHUMG00000149851 15 15q26.3 insulin-like growth factor 1 receptor protein-coding IGF1R insulin-like growth factor 1 receptor O IGF-I receptor|insulin-like growth factor I receptor|soluble IGF1R variant 1|soluble IGF1R variant 2 20121230 -9606 3481 IGF2 PP1446 C11orf43|IGF-II|PP9974 HGNC:5466|MIM:147470|Ensembl:ENSG00000167244|HPRD:00939|HPRD:17410|Vega:OTTHUMG00000009395 11 11p15.5 insulin-like growth factor 2 (somatomedin A) protein-coding IGF2 insulin-like growth factor 2 (somatomedin A) O insulin-like growth factor II|insulin-like growth factor type 2|somatomedin-A 20121230 -9606 3482 IGF2R - CD222|CIMPR|M6P-R|MPR1|MPRI HGNC:5467|MIM:147280|Ensembl:ENSG00000197081|HPRD:00928|Vega:OTTHUMG00000015945 6 6q26 insulin-like growth factor 2 receptor protein-coding IGF2R insulin-like growth factor 2 receptor O 300 kDa mannose 6-phosphate receptor|CI Man-6-P receptor|CI-MPR|IGF-II receptor|M6P/IGF2 receptor|M6P/IGF2R|M6PR|MPR 300|cation-independent mannose-6 phosphate receptor|cation-independent mannose-6-phosphate receptor|insulin-like growth factor II receptor 20121230 -9606 3483 IGFALS - ALS HGNC:5468|MIM:601489|Ensembl:ENSG00000099769|HPRD:03290|Vega:OTTHUMG00000128638 16 16p13.3 insulin-like growth factor binding protein, acid labile subunit protein-coding IGFALS insulin-like growth factor binding protein, acid labile subunit O insulin-like growth factor binding protein complex acid labile chain|insulin-like growth factor-binding protein complex acid labile subunit 20121230 -9606 3484 IGFBP1 tcag7.702 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 HGNC:5469|MIM:146730|Ensembl:ENSG00000146678|HPRD:00897|Vega:OTTHUMG00000152343 7 7p13-p12 insulin-like growth factor binding protein 1 protein-coding IGFBP1 insulin-like growth factor binding protein 1 O IBP-1|IGF-binding protein 1|IGFBP-1|alpha-pregnancy-associated endometrial globulin|amniotic fluid binding protein|binding protein-25|binding protein-26|binding protein-28|growth hormone independent-binding protein|insulin-like growth factor-binding protein 1|placental protein 12 20121230 -9606 3485 IGFBP2 - IBP2|IGF-BP53 HGNC:5471|MIM:146731|Ensembl:ENSG00000115457|HPRD:00898|Vega:OTTHUMG00000155341 2 2q33-q34 insulin-like growth factor binding protein 2, 36kDa protein-coding IGFBP2 insulin-like growth factor binding protein 2, 36kDa O IBP-2|IGF-binding protein 2|IGFBP-2|insulin-like growth factor-binding protein 2 20121230 -9606 3486 IGFBP3 tcag7.703 BP-53|IBP3 HGNC:5472|MIM:146732|Ensembl:ENSG00000146674|HPRD:00899|Vega:OTTHUMG00000023769 7 7p13-p12 insulin-like growth factor binding protein 3 protein-coding IGFBP3 insulin-like growth factor binding protein 3 O IBP-3|IGF-binding protein 3|IGFBP-3|acid stable subunit of the 140 K IGF complex|binding protein 29|binding protein 53|growth hormone-dependent binding protein|insulin-like growth factor-binding protein 3 20121230 -9606 3487 IGFBP4 - BP-4|HT29-IGFBP|IBP4|IGFBP-4 HGNC:5473|MIM:146733|Ensembl:ENSG00000141753|HPRD:00900|Vega:OTTHUMG00000133326 17 17q12-q21.1 insulin-like growth factor binding protein 4 protein-coding IGFBP4 insulin-like growth factor binding protein 4 O IBP-4|IGF-binding protein 4|insulin-like growth factor-binding protein 4 20121230 -9606 3488 IGFBP5 - IBP5 HGNC:5474|MIM:146734|Ensembl:ENSG00000115461|HPRD:00901|Vega:OTTHUMG00000133058 2 2q33-q36 insulin-like growth factor binding protein 5 protein-coding IGFBP5 insulin-like growth factor binding protein 5 O IBP-5|IGF-binding protein 5|IGFBP-5|insulin-like growth factor-binding protein 5 20121230 -9606 3489 IGFBP6 - IBP6 HGNC:5475|MIM:146735|Ensembl:ENSG00000167779|HPRD:00902|Vega:OTTHUMG00000169773 12 12q13 insulin-like growth factor binding protein 6 protein-coding IGFBP6 insulin-like growth factor binding protein 6 O IBP-6|IGF binding protein 6|IGF-binding protein 6|IGFBP-6|insulin-like growth factor-binding protein 6 20121230 -9606 3490 IGFBP7 - AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF HGNC:5476|MIM:602867|Ensembl:ENSG00000163453|HPRD:04183|Vega:OTTHUMG00000128772 4 4q12 insulin-like growth factor binding protein 7 protein-coding IGFBP7 insulin-like growth factor binding protein 7 O IGF-binding protein 7|IGFBP-rP1|PGI2-stimulating factor|angiomodulin|insulin-like growth factor-binding protein 7|prostacyclin-stimulating factor|tumor-derived adhesion factor 20121230 -9606 3491 CYR61 - CCN1|GIG1|IGFBP10 HGNC:2654|MIM:602369|Ensembl:ENSG00000142871|HPRD:09089|Vega:OTTHUMG00000010577 1 1p22.3 cysteine-rich, angiogenic inducer, 61 protein-coding CYR61 cysteine-rich, angiogenic inducer, 61 O CCN family member 1|IBP-10|IGF-binding protein 10|IGFBP-10|cysteine-rich heparin-binding protein 61|cysteine-rich, anigogenic inducer, 61|insulin-like growth factor-binding protein 10|protein CYR61 20121230 -9606 3492 IGH@ - IGH|IGH.1@|IGHDY1 HGNC:5477 14 14q32.33 immunoglobulin heavy locus protein-coding IGH@ immunoglobulin heavy locus O immunglobulin heavy chain variable region 20121230 -9606 3493 IGHA1 - IgA1 HGNC:5478|MIM:146900|IMGT/GENE-DB:IGHA1 14 14q32.33 immunoglobulin heavy constant alpha 1 other IGHA1 immunoglobulin heavy constant alpha 1 O - 20121230 -9606 3494 IGHA2 - - HGNC:5479|MIM:147000|IMGT/GENE-DB:IGHA2 14 14q32.33 immunoglobulin heavy constant alpha 2 (A2m marker) other IGHA2 immunoglobulin heavy constant alpha 2 (A2m marker) O - 20121230 -9606 3495 IGHD - - HGNC:5480|MIM:147170|IMGT/GENE-DB:IGHD 14 14q32.33 immunoglobulin heavy constant delta other IGHD immunoglobulin heavy constant delta O - 20121230 -9606 3496 IGHDOR15@ - IGD2|IGHD/OR15|IGHDY2 MIM:146990 15 15q11-q12 immunoglobulin heavy diversity orphans on chromosome 15 other - - - - 20101007 -9606 3497 IGHE - IgE HGNC:5522|MIM:147180|IMGT/GENE-DB:IGHE 14 14q32.33 immunoglobulin heavy constant epsilon other IGHE immunoglobulin heavy constant epsilon O - 20121230 -9606 3498 IGHEP1 - - HGNC:5523|IMGT/GENE-DB:IGHEP1 14 14q32.33 immunoglobulin heavy constant epsilon P1 (pseudogene) pseudo IGHEP1 immunoglobulin heavy constant epsilon P1 (pseudogene) O - 20121230 -9606 3499 IGHEP2 - - HGNC:5524|IMGT/GENE-DB:IGHEP2 9 9p24.1 immunoglobulin heavy constant epsilon P2 (pseudogene) pseudo IGHEP2 immunoglobulin heavy constant epsilon P2 (pseudogene) O - 20121230 -9606 3500 IGHG1 - - HGNC:5525|MIM:147100|IMGT/GENE-DB:IGHG1 14 14q32.33 immunoglobulin heavy constant gamma 1 (G1m marker) other IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) O - 20121230 -9606 3501 IGHG2 - - HGNC:5526|MIM:147110|IMGT/GENE-DB:IGHG2 14 14q32.33 immunoglobulin heavy constant gamma 2 (G2m marker) other IGHG2 immunoglobulin heavy constant gamma 2 (G2m marker) O - 20121230 -9606 3502 IGHG3 - IgG3 HGNC:5527|MIM:147120|IMGT/GENE-DB:IGHG3 14 14q32.33 immunoglobulin heavy constant gamma 3 (G3m marker) other IGHG3 immunoglobulin heavy constant gamma 3 (G3m marker) O - 20121230 -9606 3503 IGHG4 - - HGNC:5528|MIM:147130|IMGT/GENE-DB:IGHG4 14 14q32.33 immunoglobulin heavy constant gamma 4 (G4m marker) other IGHG4 immunoglobulin heavy constant gamma 4 (G4m marker) O - 20121230 -9606 3505 IGHGP - IGHGP1 HGNC:5529|IMGT/GENE-DB:IGHGP 14 14q32.33 immunoglobulin heavy constant gamma P (non-functional) pseudo IGHGP immunoglobulin heavy constant gamma P (non-functional) O - 20121230 -9606 3506 IGHJ@ - IGHJ HGNC:5531|MIM:147010 14 14q32.33 immunoglobulin heavy joining cluster other IGHJ@ immunoglobulin heavy joining cluster O - 20120208 -9606 3507 IGHM - AGM1|MU|VH HGNC:5541|MIM:147020|IMGT/GENE-DB:IGHM 14 14q32.33 immunoglobulin heavy constant mu other IGHM immunoglobulin heavy constant mu O - 20121230 -9606 3508 IGHMBP2 - CATF1|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7 HGNC:5542|MIM:600502|Ensembl:ENSG00000132740|HPRD:02736|Vega:OTTHUMG00000167894 11 11q13.3 immunoglobulin mu binding protein 2 protein-coding IGHMBP2 immunoglobulin mu binding protein 2 O ATP-dependent helicase IGHMBP2|DNA-binding protein SMUBP-2|GF-1|cardiac transcription factor 1|glial factor 1|immunoglobulin mu-binding protein 2|zinc finger, AN1-type domain 7 20121230 -9606 3509 IGHV@ - IGHV HGNC:5545|MIM:147070 14 14q32.33 immunoglobulin heavy variable cluster other IGHV@ immunoglobulin heavy variable cluster O - 20121230 -9606 3512 IGJ - IGCJ|JCH HGNC:5713|MIM:147790|Ensembl:ENSG00000132465|HPRD:00991|Vega:OTTHUMG00000129909 4 4q21 immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides protein-coding IGJ immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides O IgJ chain|immunoglobulin J chain 20121230 -9606 3513 IGJP1 - - HGNC:5714 8 8q21.2 immunoglobulin J polypeptide pseudogene 1 pseudo IGJP1 immunoglobulin J polypeptide pseudogene 1 O - 20121230 -9606 3514 IGKC - HCAK1|IGKCD|Km HGNC:5716|MIM:147200|IMGT/GENE-DB:IGKC 2 2p12 immunoglobulin kappa constant other IGKC immunoglobulin kappa constant O - 20121230 -9606 3515 IGKDEL - IGKDE HGNC:5717|MIM:146780 2 2p12 immunoglobulin kappa deleting element or like other IGKDEL immunoglobulin kappa deleting element or like O - 20120816 -9606 3516 RBPJ - AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl HGNC:5724|MIM:147183|Ensembl:ENSG00000168214|HPRD:00920|Vega:OTTHUMG00000097793 4 4p15.2 recombination signal binding protein for immunoglobulin kappa J region protein-coding RBPJ recombination signal binding protein for immunoglobulin kappa J region O CBF-1|H-2K binding factor-2|RBP-J kappa|RBP-JK|immunoglobulin kappa J region recombination signal binding protein 1|recombining binding protein suppressor of hairless|renal carcinoma antigen NY-REN-30|suppressor of hairless homolog 20121230 -9606 3517 RBPJP2 - IGKJRBP2|RBPSUHP2 HGNC:5726 9 9q13 RBPJ pseudogene 2 pseudo RBPJP2 RBPJ pseudogene 2 O - 20121230 -9606 3519 IGKV@ - IGKV|IGKV1|IGKV1@|IGKV2|IGKV2@|IGKV3|IGKV3@ HGNC:5728|MIM:146980 2 2p12 immunoglobulin kappa variable cluster other IGKV@ immunoglobulin kappa variable cluster O - 20120208 -9606 3523 IGKV3OR2-268 - IGKV268|IGKV3OR2-268A|IGKV3OR2268|IGKV3OR2268A HGNC:5830|IMGT/GENE-DB:IGKV3/OR2-268 2 2p12 immunoglobulin kappa variable 3/OR2-268 (non-functional) other IGKV3OR2-268 immunoglobulin kappa variable 3/OR2-268 (non-functional) O - 20120514 -9606 3525 IGKV1OR1-1 - IGKV1/OR1-1|IGKV1OR11|IGKVP1 HGNC:5764|IMGT/GENE-DB:IGKV1/OR1-1 1 1p13-q12 immunoglobulin kappa variable 1/OR1-1 (pseudogene) pseudo IGKV1OR1-1 immunoglobulin kappa variable 1/OR1-1 (pseudogene) O - 20121230 -9606 3527 IGKV3OR22-2 - IGKV3OR222|IGKVP3 HGNC:5833|IMGT/GENE-DB:IGKV3/OR22-2 22 22q11.1 immunoglobulin kappa variable 3/OR22-2 (pseudogene) pseudo IGKV3OR22-2 immunoglobulin kappa variable 3/OR22-2 (pseudogene) O - 20121230 -9606 3529 IGKV2OR22-3 - IGKV2OR223|IGKVP4 HGNC:5812|IMGT/GENE-DB:IGKV2/OR22-3 22 22q11.1 immunoglobulin kappa variable 2/OR22-3 (pseudogene) pseudo IGKV2OR22-3 immunoglobulin kappa variable 2/OR22-3 (pseudogene) O - 20121230 -9606 3530 IGKV1OR22-1 - IGKV1OR221|IGKVP5 HGNC:5772|IMGT/GENE-DB:IGKV1/OR22-1 22 22q11.1 immunoglobulin kappa variable 1/OR22-1 (pseudogene) pseudo IGKV1OR22-1 immunoglobulin kappa variable 1/OR22-1 (pseudogene) O - 20121230 -9606 3531 IGKV1OR-1 - IGKV1/OR-1|IGKV1OR1|IGKVPZ1 HGNC:5760|IMGT/GENE-DB:IGKV1/OR-1 - - immunoglobulin kappa variable 1/OR-1 (pseudogene) pseudo IGKV1OR-1 immunoglobulin kappa variable 1/OR-1 (pseudogene) O - 20111109 -9606 3532 IGKV1OR-2 - IGKV1/OR-2|IGKV1OR2|IGKVPZ2 HGNC:5761|IMGT/GENE-DB:IGKV1/OR-2 9 - immunoglobulin kappa variable 1/OR-2 (pseudogene) pseudo IGKV1OR-2 immunoglobulin kappa variable 1/OR-2 (pseudogene) O - 20121230 -9606 3534 IGKV1OR-4 - IGKV1/OR-4|IGKV1OR4|IGKVPZ4 HGNC:5763|IMGT/GENE-DB:IGKV1/OR-4 - - immunoglobulin kappa variable 1/OR-4 (pseudogene) pseudo IGKV1OR-4 immunoglobulin kappa variable 1/OR-4 (pseudogene) O - 20111109 -9606 3535 IGL@ - IGL|IGLC6 HGNC:5853 22 22q11.2 immunoglobulin lambda locus protein-coding IGL@ immunoglobulin lambda locus O ig lambda-6 chain C region|immunoglobulin lambda gene cluster 20121230 -9606 3536 IGLC@ - IGLC HGNC:5854 22 22q11.2 immunoglobulin lambda constant cluster other IGLC@ immunoglobulin lambda constant cluster O - 20120208 -9606 3537 IGLC1 - IGLC HGNC:5855|MIM:147220|IMGT/GENE-DB:IGLC1 22 22q11.2 immunoglobulin lambda constant 1 (Mcg marker) other IGLC1 immunoglobulin lambda constant 1 (Mcg marker) O - 20121230 -9606 3538 IGLC2 - IGLC HGNC:5856|IMGT/GENE-DB:IGLC2 22 22q11.2 immunoglobulin lambda constant 2 (Kern-Oz- marker) other IGLC2 immunoglobulin lambda constant 2 (Kern-Oz- marker) O - 20121230 -9606 3539 IGLC3 - IGLC HGNC:5857|IMGT/GENE-DB:IGLC3 22 22q11.2 immunoglobulin lambda constant 3 (Kern-Oz+ marker) other IGLC3 immunoglobulin lambda constant 3 (Kern-Oz+ marker) O - 20121230 -9606 3540 IGLC4 - IGLC HGNC:5858|IMGT/GENE-DB:IGLC4 22 22q11.2 immunoglobulin lambda constant 4 (pseudogene) pseudo IGLC4 immunoglobulin lambda constant 4 (pseudogene) O - 20121230 -9606 3541 IGLC5 - IGLC HGNC:5859|IMGT/GENE-DB:IGLC5 22 22q11.2 immunoglobulin lambda constant 5 (pseudogene) pseudo IGLC5 immunoglobulin lambda constant 5 (pseudogene) O - 20121230 -9606 3542 IGLC6 - IGLC HGNC:5860|IMGT/GENE-DB:IGLC6 22 22q11.2 immunoglobulin lambda constant 6 (Kern+Oz- marker, gene/pseudogene) other IGLC6 immunoglobulin lambda constant 6 (Kern+Oz- marker, gene/pseudogene) O - 20121230 -9606 3543 IGLL1 - 14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2 HGNC:5870|MIM:146770|Ensembl:ENSG00000128322|HPRD:00905|Vega:OTTHUMG00000150673 22 22q11.23 immunoglobulin lambda-like polypeptide 1 protein-coding IGLL1 immunoglobulin lambda-like polypeptide 1 O CD179 antigen-like family member B|CD179b antigen|Pre-B lymphocyte-specific protein-2|ig lambda-5|immunoglobulin omega polypeptide chain|immunoglobulin-related 14.1 protein|immunoglobulin-related protein 14.1|lambda5 20121230 -9606 3544 IGLL2P - 16.2|FLAMBDA1|IGLL1P|IGLL2 HGNC:5871 22 22q11.23 immunoglobulin lambda-like polypeptide 2, pseudogene pseudo IGLL2P immunoglobulin lambda-like polypeptide 2, pseudogene O - 20120720 -9606 3546 IGLV@ - IGLV HGNC:5875|MIM:147240 22 22q11.2 immunoglobulin lambda variable cluster other IGLV@ immunoglobulin lambda variable cluster O - 20120923 -9606 3547 IGSF1 RP11-689E9.1 IGCD1|IGDC1|INHBP|PGSF2|p120 HGNC:5948|MIM:300137|Ensembl:ENSG00000147255|HPRD:02138|Vega:OTTHUMG00000022406 X Xq25 immunoglobulin superfamily, member 1 protein-coding IGSF1 immunoglobulin superfamily, member 1 O immunoglobulin superfamily member 1|immunoglobulin-like domain-containing protein 1|inhibin-binding protein|pituitary gland-specific factor 2 20121230 -9606 3548 IHG1 - IHG HGNC:5954|MIM:308500 X - iris hypoplasia with glaucoma 1 unknown IHG1 iris hypoplasia with glaucoma 1 O - 20110215 -9606 3549 IHH - BDA1|HHG2 HGNC:5956|MIM:600726|Ensembl:ENSG00000163501|HPRD:02839|Vega:OTTHUMG00000154631 2 2q33-q35 Indian hedgehog protein-coding IHH Indian hedgehog O HHG-2|Indian hedgehog homolog|indian hedgehog protein 20121230 -9606 3550 IK - CSA2|RED HGNC:5958|MIM:600549|Ensembl:ENSG00000113141|HPRD:02771|Vega:OTTHUMG00000163374 5 5q31.3 IK cytokine, down-regulator of HLA II protein-coding IK IK cytokine, down-regulator of HLA II O IK factor|RD element|chondrosarcoma-associated protein 2|cytokine IK|prer protein|protein Red 20121230 -9606 3551 IKBKB - IKK-beta|IKK2|IKKB|NFKBIKB HGNC:5960|MIM:603258|Ensembl:ENSG00000104365|HPRD:04462|Vega:OTTHUMG00000164092 8 8p11.2 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta protein-coding IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta O I-kappa-B kinase 2|I-kappa-B-kinase beta|IKK-B|inhibitor of nuclear factor kappa-B kinase subunit beta|nuclear factor NF-kappa-B inhibitor kinase beta 20121230 -9606 3552 IL1A - IL-1A|IL1|IL1-ALPHA|IL1F1 HGNC:5991|MIM:147760|Ensembl:ENSG00000115008|HPRD:00988|Vega:OTTHUMG00000131315 2 2q14 interleukin 1, alpha protein-coding IL1A interleukin 1, alpha O IL-1 alpha|hematopoietin-1|interleukin-1 alpha|preinterleukin 1 alpha|pro-interleukin-1-alpha 20121230 -9606 3553 IL1B - IL-1|IL1-BETA|IL1F2 HGNC:5992|MIM:147720|Ensembl:ENSG00000125538|HPRD:00985|Vega:OTTHUMG00000131344 2 2q14 interleukin 1, beta protein-coding IL1B interleukin 1, beta O IL-1 beta|catabolin|interleukin-1 beta|preinterleukin 1 beta|pro-interleukin-1-beta 20121230 -9606 3554 IL1R1 - CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 HGNC:5993|MIM:147810|Ensembl:ENSG00000115594|HPRD:00994|Vega:OTTHUMG00000130783 2 2q12 interleukin 1 receptor, type I protein-coding IL1R1 interleukin 1 receptor, type I O CD121 antigen-like family member A|IL-1R-1|IL-1RT-1|IL-1RT1|antigen CD121a|interleukin 1 receptor alpha, type I|interleukin receptor 1|interleukin-1 receptor alpha|interleukin-1 receptor type 1|interleukin-1 receptor type I 20121230 -9606 3556 IL1RAP - C3orf13|IL-1RAcP|IL1R3 HGNC:5995|MIM:602626|Ensembl:ENSG00000196083|HPRD:04021|Vega:OTTHUMG00000156211 3 3q28 interleukin 1 receptor accessory protein protein-coding IL1RAP interleukin 1 receptor accessory protein O IL-1 receptor accessory protein|IL-1R3|interleukin-1 receptor 3|interleukin-1 receptor accessory protein|interleukin-1 receptor accessory protein beta 20121230 -9606 3557 IL1RN - DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 HGNC:6000|MIM:147679|Ensembl:ENSG00000136689|HPRD:00978|Vega:OTTHUMG00000131341 2 2q14.2 interleukin 1 receptor antagonist protein-coding IL1RN interleukin 1 receptor antagonist O IL1 inhibitor|IL1RN (IL1F3)|interleukin-1 receptor antagonist protein|intracellular IL-1 receptor antagonist type II|intracellular interleukin-1 receptor antagonist (icIL-1ra)|type II interleukin-1 receptor antagonist 20121230 -9606 3558 IL2 - IL-2|TCGF|lymphokine HGNC:6001|MIM:147680|Ensembl:ENSG00000109471|HPRD:00979|Vega:OTTHUMG00000133075 4 4q26-q27 interleukin 2 protein-coding IL2 interleukin 2 O T cell growth factor|aldesleukin|interleukin-2|involved in regulation of T-cell clonal expansion 20121230 -9606 3559 IL2RA RP11-536K7.1 CD25|IDDM10|IL2R|TCGFR HGNC:6008|MIM:147730|Ensembl:ENSG00000134460|HPRD:00986|Vega:OTTHUMG00000017616 10 10p15-p14 interleukin 2 receptor, alpha protein-coding IL2RA interleukin 2 receptor, alpha O IL-2 receptor subunit alpha|IL-2-RA|IL-2R subunit alpha|IL2-RA|TAC antigen|interleukin-2 receptor subunit alpha|p55 20121230 -9606 3560 IL2RB RP5-1170K4.6 CD122|IL15RB|P70-75 HGNC:6009|MIM:146710|Ensembl:ENSG00000100385|HPRD:00896|Vega:OTTHUMG00000150534 22 22q13.1 interleukin 2 receptor, beta protein-coding IL2RB interleukin 2 receptor, beta O CD122 antigen|IL-2 receptor subunit beta|IL-2R subunit beta|IL-2RB|high affinity IL-2 receptor beta subunit|high affinity IL-2 receptor subunit beta|interleukin 15 receptor, beta|interleukin-2 receptor subunit beta|p75 20121230 -9606 3561 IL2RG - CD132|CIDX|IL-2RG|IMD4|P64|SCIDX|SCIDX1 HGNC:6010|MIM:308380|Ensembl:ENSG00000147168|HPRD:02391|Vega:OTTHUMG00000021787 X Xq13.1 interleukin 2 receptor, gamma protein-coding IL2RG interleukin 2 receptor, gamma O CD132 antigen|IL-2 receptor subunit gamma|IL-2R subunit gamma|common cytokine receptor gamma chain|cytokine receptor common subunit gamma|gammaC 20121230 -9606 3562 IL3 - IL-3|MCGF|MULTI-CSF HGNC:6011|MIM:147740|Ensembl:ENSG00000164399|HPRD:00987|Vega:OTTHUMG00000059640 5 5q31.1 interleukin 3 (colony-stimulating factor, multiple) protein-coding IL3 interleukin 3 (colony-stimulating factor, multiple) O P-cell stimulating factor|P-cell-stimulating factor|hematopoietic growth factor|interleukin-3|mast cell growth factor|mast-cell growth factor|multilineage-colony-stimulating factor|multipotential colony-stimulating factor 20121230 -9606 3563 IL3RA RP11-261P4.2 CD123|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra HGNC:6012|MIM:308385|MIM:430000|Ensembl:ENSG00000185291|HPRD:02392|HPRD:08951|Vega:OTTHUMG00000021059 X|Y Xp22.3 or Yp11.3 interleukin 3 receptor, alpha (low affinity) protein-coding IL3RA interleukin 3 receptor, alpha (low affinity) O CD123 antigen|IL-3 receptor alpha SP2 isoform|IL-3 receptor subunit alpha|IL-3R subunit alpha|IL-3R-alpha|IL-3RA|interleukin-3 receptor subunit alpha 20121230 -9606 3565 IL4 - BCGF-1|BCGF1|BSF-1|BSF1|IL-4 HGNC:6014|MIM:147780|Ensembl:ENSG00000113520|HPRD:00989|Vega:OTTHUMG00000059724 5 5q31.1 interleukin 4 protein-coding IL4 interleukin 4 O B cell growth factor 1|B_cell stimulatory factor 1|binetrakin|interleukin-4|lymphocyte stimulatory factor 1|pitrakinra 20121230 -9606 3566 IL4R 582J2.1 CD124|IL-4RA|IL4RA HGNC:6015|MIM:147781|Ensembl:ENSG00000077238|HPRD:00990|Vega:OTTHUMG00000097015 16 16p12.1-p11.2 interleukin 4 receptor protein-coding IL4R interleukin 4 receptor O IL-4 receptor subunit alpha|IL4R nirs variant 1|interleukin-4 receptor alpha chain|interleukin-4 receptor subunit alpha 20121230 -9606 3567 IL5 - EDF|IL-5|TRF HGNC:6016|MIM:147850|Ensembl:ENSG00000113525|HPRD:00997|Vega:OTTHUMG00000059496 5 5q31.1 interleukin 5 (colony-stimulating factor, eosinophil) protein-coding IL5 interleukin 5 (colony-stimulating factor, eosinophil) O B-cell differentiation factor I|T-cell replacing factor|eosinophil differentiation factor|interleukin-5 20121230 -9606 3568 IL5RA - CD125|CDw125|HSIL5R3|IL5R HGNC:6017|MIM:147851|Ensembl:ENSG00000091181|HPRD:00998|Vega:OTTHUMG00000090245 3 3p26-p24 interleukin 5 receptor, alpha protein-coding IL5RA interleukin 5 receptor, alpha O CD125 antigen|IL-5 receptor subunit alpha|IL-5R subunit alpha|interleukin 5 receptor type 3|interleukin-5 receptor alpha chain|interleukin-5 receptor subunit alpha 20121230 -9606 3569 IL6 - BSF2|HGF|HSF|IFNB2|IL-6 HGNC:6018|MIM:147620|Ensembl:ENSG00000136244|HPRD:00970|Vega:OTTHUMG00000023178 7 7p21 interleukin 6 (interferon, beta 2) protein-coding IL6 interleukin 6 (interferon, beta 2) O B-cell differentiation factor|B-cell stimulatory factor 2|BSF-2|CDF|CTL differentiation factor|IFN-beta-2|hybridoma growth factor|interferon beta-2|interleukin BSF-2|interleukin-6 20121230 -9606 3570 IL6R - CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 HGNC:6019|MIM:147880|Ensembl:ENSG00000160712|HPRD:01000|Vega:OTTHUMG00000036073 1 1q21 interleukin 6 receptor protein-coding IL6R interleukin 6 receptor O CD126 antigen|IL-6 receptor subunit alpha|IL-6R 1|interleukin-6 receptor subunit alpha|membrane glycoprotein 80 20121230 -9606 3572 IL6ST - CD130|CDW130|GP130|IL-6RB HGNC:6021|MIM:600694|Ensembl:ENSG00000134352|HPRD:02824|Vega:OTTHUMG00000097043 5 5q11.2 interleukin 6 signal transducer (gp130, oncostatin M receptor) protein-coding IL6ST interleukin 6 signal transducer (gp130, oncostatin M receptor) O CD130 antigen|IL-6 receptor subunit beta|IL-6R subunit beta|gp130 of the rheumatoid arthritis antigenic peptide-bearing soluble form|interleukin receptor beta chain|interleukin-6 receptor subunit beta|membrane glycoprotein 130|membrane glycoprotein gp130|oncostatin-M receptor subunit alpha 20121230 -9606 3573 IL6STP1 - IL6STP HGNC:6022 17 17p11 interleukin 6 signal transducer (gp130, oncostatin M receptor) pseudogene 1 pseudo IL6STP1 interleukin 6 signal transducer (gp130, oncostatin M receptor) pseudogene 1 O - 20121230 -9606 3574 IL7 - IL-7 HGNC:6023|MIM:146660|Ensembl:ENSG00000104432|HPRD:00892|Vega:OTTHUMG00000164620 8 8q12-q13 interleukin 7 protein-coding IL7 interleukin 7 O interleukin-7 20121230 -9606 3575 IL7R - CD127|CDW127|IL-7R-alpha|IL7RA|ILRA HGNC:6024|MIM:146661|Ensembl:ENSG00000168685|HPRD:00893|Vega:OTTHUMG00000090791 5 5p13 interleukin 7 receptor protein-coding IL7R interleukin 7 receptor O CD127 antigen|IL-7 receptor subunit alpha|IL-7R subunit alpha|IL-7RA|interleukin 7 receptor alpha chain|interleukin 7 receptor isoform H5-6|interleukin-7 receptor subunit alpha 20121230 -9606 3576 IL8 - CXCL8|GCP-1|GCP1|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 HGNC:6025|MIM:146930|Ensembl:ENSG00000169429|HPRD:00909|Vega:OTTHUMG00000151316 4 4q13-q21 interleukin 8 protein-coding IL8 interleukin 8 O T-cell chemotactic factor|alveolar macrophage chemotactic factor I|beta endothelial cell-derived neutrophil activating peptide|beta-thromboglobulin-like protein|chemokine (C-X-C motif) ligand 8|emoctakin|granulocyte chemotactic protein 1|interleukin-8|lung giant cell carcinoma-derived chemotactic protein|lymphocyte derived neutrophil activating peptide|monocyte-derived neutrophil chemotactic factor|monocyte-derived neutrophil-activating peptide|neutrophil-activating peptide 1|small inducible cytokine subfamily B, member 8|tumor necrosis factor-induced gene 1 20121230 -9606 3577 CXCR1 - C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA HGNC:6026|MIM:146929|Ensembl:ENSG00000163464|HPRD:00908|Vega:OTTHUMG00000133108 2 2q35 chemokine (C-X-C motif) receptor 1 protein-coding CXCR1 chemokine (C-X-C motif) receptor 1 O C-X-C chemokine receptor type 1|CXC-R1|CXCR-1|IL-8 receptor type 1|IL-8R A|high affinity interleukin-8 receptor A|interleukin 8 receptor, alpha|interleukin-8 receptor type 1|interleukin-8 receptor type A 20121230 -9606 3578 IL9 - HP40|IL-9|P40 HGNC:6029|MIM:146931|Ensembl:ENSG00000145839|HPRD:00910|Vega:OTTHUMG00000129147 5 5q31.1 interleukin 9 protein-coding IL9 interleukin 9 O T-cell growth factor p40|cytokine P40|homolog of mouse T cell and mast cell growth factor 40|interleukin-9|p40 T-cell and mast cell growth factor|p40 cytokine 20121230 -9606 3579 CXCR2 - CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB HGNC:6027|MIM:146928|Ensembl:ENSG00000180871|HPRD:00907|Vega:OTTHUMG00000133107 2 2q35 chemokine (C-X-C motif) receptor 2 protein-coding CXCR2 chemokine (C-X-C motif) receptor 2 O C-X-C chemokine receptor type 2|CXC-R2|CXCR-2|CXCR2 gene for IL8 receptor type B|GRO/MGSA receptor|IL-8 receptor type 2|IL-8R B|chemokine (CXC) receptor 2|high affinity interleukin-8 receptor B|interleukin 8 receptor B|interleukin 8 receptor type 2|interleukin 8 receptor, beta|interleukin-8 receptor type B 20121230 -9606 3580 CXCR2P1 - CXCR2P|IL8RBP HGNC:6028 2 2q35 chemokine (C-X-C motif) receptor 2 pseudogene 1 pseudo CXCR2P1 chemokine (C-X-C motif) receptor 2 pseudogene 1 O - 20121230 -9606 3581 IL9R - CD129|IL-9R HGNC:6030|MIM:300007|Ensembl:ENSG00000124334|HPRD:02052|Vega:OTTHUMG00000022720 X|Y Xq28 and Yq12 interleukin 9 receptor protein-coding IL9R interleukin 9 receptor O IL-9 receptor|interleukin-9 receptor 20121230 -9606 3586 IL10 RP11-262N9.1 CSIF|GVHDS|IL-10|IL10A|TGIF HGNC:5962|MIM:124092|Ensembl:ENSG00000136634|HPRD:00495|Vega:OTTHUMG00000036386 1 1q31-q32 interleukin 10 protein-coding IL10 interleukin 10 O T-cell growth inhibitory factor|cytokine synthesis inhibitory factor|interleukin-10 20121230 -9606 3587 IL10RA - CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R HGNC:5964|MIM:146933|Ensembl:ENSG00000110324|HPRD:00911|Vega:OTTHUMG00000166523 11 11q23 interleukin 10 receptor, alpha protein-coding IL10RA interleukin 10 receptor, alpha O IL-10 receptor subunit alpha|IL-10R subunit 1|IL-10R subunit alpha|IL-10RA|interleukin-10 receptor alpha chain|interleukin-10 receptor subunit 1|interleukin-10 receptor subunit alpha 20121230 -9606 3588 IL10RB - CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 HGNC:5965|MIM:123889|Ensembl:ENSG00000243646|HPRD:00473|Vega:OTTHUMG00000065128 21 21q22.11 interleukin 10 receptor, beta protein-coding IL10RB interleukin 10 receptor, beta O IL-10 receptor subunit beta|IL-10R subunit 2|IL-10R subunit beta|IL-10RB|cytokine receptor class-II CRF2-4|cytokine receptor class-II member 4|cytokine receptor family 2 member 4|cytokine receptor family II, member 4|interleukin-10 receptor subunit 2|interleukin-10 receptor subunit beta 20121230 -9606 3589 IL11 - AGIF|IL-11 HGNC:5966|MIM:147681|Ensembl:ENSG00000095752|HPRD:00980|Vega:OTTHUMG00000180789 19 19q13.3-q13.4 interleukin 11 protein-coding IL11 interleukin 11 O adipogenesis inhibitory factor|interleukin-11|oprelvekin 20121230 -9606 3590 IL11RA hCG_2011440 CRSDA HGNC:5967|MIM:600939|Ensembl:ENSG00000137070|HPRD:02965|Vega:OTTHUMG00000019837 9 9p13 interleukin 11 receptor, alpha protein-coding IL11RA interleukin 11 receptor, alpha O IL-11 receptor subunit alpha|IL-11R subunit alpha|interleukin-11 receptor alpha chain|interleukin-11 receptor subunit alpha 20121230 -9606 3591 IL11RB - - HGNC:5968 - - interleukin 11 receptor, beta protein-coding IL11RB interleukin 11 receptor, beta O - 20080828 -9606 3592 IL12A - CLMF|IL-12A|NFSK|NKSF1|P35 HGNC:5969|MIM:161560|Ensembl:ENSG00000168811|HPRD:01193|Vega:OTTHUMG00000158942 3 3q25.33 interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) protein-coding IL12A interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) O CLMF p35|IL-12 subunit p35|IL-12, subunit p35|IL35 subunit|NF cell stimulatory factor chain 1|NK cell stimulatory factor chain 1|cytotoxic lymphocyte maturation factor 1, p35|cytotoxic lymphocyte maturation factor 35 kDa subunit|interleukin 12, p35|interleukin-12 alpha chain|interleukin-12 subunit alpha|natural killer cell stimulatory factor 1, 35 kD subunit 20121230 -9606 3593 IL12B - CLMF|CLMF2|IL-12B|NKSF|NKSF2 HGNC:5970|MIM:161561|Ensembl:ENSG00000113302|HPRD:01194|Vega:OTTHUMG00000130307 5 5q31.1-q33.1 interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40) protein-coding IL12B interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40) O CLMF p40|IL-12 subunit p40|IL12, subunit p40|NK cell stimulatory factor chain 2|cytotoxic lymphocyte maturation factor 40 kDa subunit|interleukin 12, p40|interleukin-12 beta chain|interleukin-12 subunit beta|natural killer cell stimulatory factor, 40 kD subunit 20121230 -9606 3594 IL12RB1 - CD212|IL-12R-BETA1|IL12RB HGNC:5971|MIM:601604|Ensembl:ENSG00000096996|HPRD:03363 19 19p13.1 interleukin 12 receptor, beta 1 protein-coding IL12RB1 interleukin 12 receptor, beta 1 O IL-12 receptor beta component|IL-12 receptor subunit beta-1|IL-12R subunit beta-1|IL-12R-beta-1|IL-12RB1|interleukin-12 receptor beta-1 chain|interleukin-12 receptor subunit beta-1 20121230 -9606 3595 IL12RB2 RP11-102M16.1 - HGNC:5972|MIM:601642|Ensembl:ENSG00000081985|HPRD:03383|Vega:OTTHUMG00000009094 1 1p31.3-p31.2 interleukin 12 receptor, beta 2 protein-coding IL12RB2 interleukin 12 receptor, beta 2 O IL-12 receptor subunit beta-2|IL-12R subunit beta-2|interleukin-12 receptor beta-2 chain|interleukin-12 receptor subunit beta-2 20121230 -9606 3596 IL13 - ALRH|BHR1|IL-13|P600 HGNC:5973|MIM:147683|Ensembl:ENSG00000169194|HPRD:00981|Vega:OTTHUMG00000059723 5 5q31 interleukin 13 protein-coding IL13 interleukin 13 O Bronchial hyperresponsiveness-1 (bronchial asthma)|allergic rhinitis|interleukin-13 20121230 -9606 3597 IL13RA1 RP13-128O4.2 CD213A1|IL-13Ra|NR4 HGNC:5974|MIM:300119|Ensembl:ENSG00000131724|HPRD:02125|Vega:OTTHUMG00000022258 X Xq24 interleukin 13 receptor, alpha 1 protein-coding IL13RA1 interleukin 13 receptor, alpha 1 O CD213a1 antigen|CT19|IL-13 receptor subunit alpha-1|IL-13R subunit alpha-1|IL-13R-alpha-1|IL-13RA1|IL13 receptor alpha-1 chain|bB128O4.2.1 (interleukin 13 receptor, alpha 1)|cancer/testis antigen 19|interleukin-13 receptor subunit alpha-1 20121230 -9606 3598 IL13RA2 - CD213A2|CT19|IL-13R|IL13BP HGNC:5975|MIM:300130|Ensembl:ENSG00000123496|HPRD:02132|Vega:OTTHUMG00000022229 X Xq13.1-q28 interleukin 13 receptor, alpha 2 protein-coding IL13RA2 interleukin 13 receptor, alpha 2 O IL-13 receptor subunit alpha-2|IL-13R subunit alpha-2|IL-13R-alpha-2|IL-13RA2|cancer/testis antigen 19|interleukin 13 binding protein|interleukin 13 receptor alpha 2 chain|interleukin-13 receptor subunit alpha-2|interleukin-13-binding protein 20121230 -9606 3600 IL15 - IL-15 HGNC:5977|MIM:600554|Ensembl:ENSG00000164136|HPRD:02776|Vega:OTTHUMG00000133418 4 4q31 interleukin 15 protein-coding IL15 interleukin 15 O interleukin-15 20121230 -9606 3601 IL15RA RP11-536K7.2 CD215 HGNC:5978|MIM:601070|Ensembl:ENSG00000134470|HPRD:03045|Vega:OTTHUMG00000017612 10 10p15.1 interleukin 15 receptor, alpha protein-coding IL15RA interleukin 15 receptor, alpha O interleukin-15 receptor subunit alpha 20121230 -9606 3603 IL16 - LCF|NIL16|PRIL16|prIL-16 HGNC:5980|MIM:603035|Ensembl:ENSG00000172349|HPRD:04329|Vega:OTTHUMG00000144186 15 15q26.3 interleukin 16 protein-coding IL16 interleukin 16 O lymphocyte chemoattractant factor|neuronal interleukin 16|pro-interleukin-16|prointerleukin 16 20121230 -9606 3604 TNFRSF9 - 4-1BB|CD137|CDw137|ILA HGNC:11924|MIM:602250|Ensembl:ENSG00000049249|HPRD:03767|Vega:OTTHUMG00000001223 1 1p36 tumor necrosis factor receptor superfamily, member 9 protein-coding TNFRSF9 tumor necrosis factor receptor superfamily, member 9 O 4-1BB ligand receptor|CD137 antigen|T cell antigen ILA|T-cell antigen 4-1BB homolog|T-cell antigen ILA|homolog of mouse 4-1BB|induced by lymphocyte activation (ILA)|interleukin-activated receptor, homolog of mouse Ly63|receptor protein 4-1BB|tumor necrosis factor receptor superfamily member 9 20121230 -9606 3605 IL17A - CTLA8|IL-17|IL-17A|IL17 HGNC:5981|MIM:603149|Ensembl:ENSG00000112115|HPRD:04396|Vega:OTTHUMG00000014840 6 6p12 interleukin 17A protein-coding IL17A interleukin 17A O CTLA-8|cytotoxic T-lymphocyte-associated antigen 8|cytotoxic T-lymphocyte-associated protein 8|interleukin 17 (cytotoxic T-lymphocyte-associated serine esterase 8)|interleukin-17A 20121230 -9606 3606 IL18 - IGIF|IL-18|IL-1g|IL1F4 HGNC:5986|MIM:600953|Ensembl:ENSG00000150782|HPRD:02976|Vega:OTTHUMG00000167006 11 11q22.2-q22.3 interleukin 18 (interferon-gamma-inducing factor) protein-coding IL18 interleukin 18 (interferon-gamma-inducing factor) O IFN-gamma-inducing factor|IL-1 gamma|iboctadekin|interleukin-1 gamma|interleukin-18 20121230 -9606 3607 FOXK2 - ILF|ILF-1|ILF1 HGNC:6036|MIM:147685|Ensembl:ENSG00000141568|HPRD:00982|Vega:OTTHUMG00000140374 17 17q25 forkhead box K2 protein-coding FOXK2 forkhead box K2 O FOXK1|cellular transcription factor ILF-1|forkhead box protein K2|interleukin enhancer binding factor 1|interleukin enhancer-binding factor 1 20121230 -9606 3608 ILF2 RP11-354A16.1 NF45|PRO3063 HGNC:6037|MIM:603181|Ensembl:ENSG00000143621|HPRD:04419|Vega:OTTHUMG00000037087 1 1q21.3 interleukin enhancer binding factor 2, 45kDa protein-coding ILF2 interleukin enhancer binding factor 2, 45kDa O interleukin enhancer-binding factor 2|nuclear factor of activated T-cells, 45-kDa 20121230 -9606 3609 ILF3 - CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80 HGNC:6038|MIM:603182|Ensembl:ENSG00000129351|HPRD:04420|Vega:OTTHUMG00000180587 19 19p13.2 interleukin enhancer binding factor 3, 90kDa protein-coding ILF3 interleukin enhancer binding factor 3, 90kDa O M-phase phosphoprotein 4|double-stranded RNA-binding protein, 76 kD|dsRNA binding protein NFAR-2/MPP4|interleukin enhancer-binding factor 3|nuclear factor associated with dsRNA|nuclear factor of activated T-cells 90 kDa|nuclear factor of activated T-cells, 90 kD|translational control protein 80 20121230 -9606 3611 ILK - ILK-2|P59 HGNC:6040|MIM:602366|Ensembl:ENSG00000166333|HPRD:03842|Vega:OTTHUMG00000133407 11 11p15.4 integrin-linked kinase protein-coding ILK integrin-linked kinase O 59 kDa serine/threonine-protein kinase|ILK-1|integrin-linked kinase-2|integrin-linked protein kinase|p59ILK 20121230 -9606 3612 IMPA1 - IMP|IMPA HGNC:6050|MIM:602064|Ensembl:ENSG00000133731|HPRD:03641|Vega:OTTHUMG00000164682 8 8q21.13-q21.3 inositol(myo)-1(or 4)-monophosphatase 1 protein-coding IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 O IMP 1|IMPase 1|inositol monophosphatase 1|inositol-1(or 4)-monophosphatase 1|lithium-sensitive myo-inositol monophosphatase A1 20121230 -9606 3613 IMPA2 - - HGNC:6051|MIM:605922|Ensembl:ENSG00000141401|HPRD:09329|Vega:OTTHUMG00000131693 18 18p11.2 inositol(myo)-1(or 4)-monophosphatase 2 protein-coding IMPA2 inositol(myo)-1(or 4)-monophosphatase 2 O IMP 2|IMPase 2|inosine monophosphatase 2|inositol monophosphatase 2|inositol monophosphatase 2 variant 1|inositol monophosphatase 2 variant 2|myo-inositol monophosphatase A2 20121230 -9606 3614 IMPDH1 - IMPD|IMPD1|LCA11|RP10|sWSS2608 HGNC:6052|MIM:146690|Ensembl:ENSG00000106348|HPRD:08853|Vega:OTTHUMG00000157713 7 7q31.3-q32 IMP (inosine 5'-monophosphate) dehydrogenase 1 protein-coding IMPDH1 IMP (inosine 5'-monophosphate) dehydrogenase 1 O IMP (inosine monophosphate) dehydrogenase 1|IMP dehydrogenase 1|IMPD 1|IMPDH 1|IMPDH-I|inosine-5'-monophosphate dehydrogenase 1 20121230 -9606 3615 IMPDH2 hCG_2002013 IMPD2|IMPDH-II HGNC:6053|MIM:146691|Ensembl:ENSG00000178035|HPRD:00895|Vega:OTTHUMG00000156771 3 3p21.2 IMP (inosine 5'-monophosphate) dehydrogenase 2 protein-coding IMPDH2 IMP (inosine 5'-monophosphate) dehydrogenase 2 O IMP (inosine monophosphate) dehydrogenase 2|IMP oxireductase 2|IMPD 2|IMPDH 2|inosine 5' phosphate dehydrogenase 2|inosine monophosphate dehydrogenase type II|inosine-5'-monophosphate dehydrogenase 2 20121230 -9606 3617 IMPG1 RP11-758J17.1 GP147|IPM150|SPACR HGNC:6055|MIM:602870|Ensembl:ENSG00000112706|HPRD:04186|Vega:OTTHUMG00000015063 6 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 protein-coding IMPG1 interphotoreceptor matrix proteoglycan 1 O IPM-150|interphotoreceptor matrix proteoglycan of 150 kDa|sialoprotein associated with cones and rods 20121230 -9606 3619 INCENP - - HGNC:6058|MIM:604411|Ensembl:ENSG00000149503|HPRD:05103|Vega:OTTHUMG00000167470 11 11q12.3 inner centromere protein antigens 135/155kDa protein-coding INCENP inner centromere protein antigens 135/155kDa O binds and activates aurora-B and -C in vivo and in vitro|chromosomal passenger protein|inner centromere protein|inner centromere protein INCENP 20121230 -9606 3620 IDO1 - IDO|IDO-1|INDO HGNC:6059|MIM:147435|Ensembl:ENSG00000131203|HPRD:00935|Vega:OTTHUMG00000164057 8 8p12-p11 indoleamine 2,3-dioxygenase 1 protein-coding IDO1 indoleamine 2,3-dioxygenase 1 O indolamine 2,3 dioxygenase|indole 2,3-dioxygenase|indoleamine-pyrrole 2,3-dioxygenase 20121230 -9606 3621 ING1 RP11-8D7.1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a HGNC:6062|MIM:601566|Ensembl:ENSG00000153487|HPRD:03337|Vega:OTTHUMG00000017346 13 13q34 inhibitor of growth family, member 1 protein-coding ING1 inhibitor of growth family, member 1 O growth inhibitor ING1|growth inhibitory protein ING1|inhibitor of growth protein 1|tumor suppressor ING1 20121230 -9606 3622 ING2 - ING1L|p33ING2 HGNC:6063|MIM:604215|Ensembl:ENSG00000168556|HPRD:05021|Vega:OTTHUMG00000150502 4 4q35.1 inhibitor of growth family, member 2 protein-coding ING2 inhibitor of growth family, member 2 O ING1Lp|inhibitor of growth 1-like protein|inhibitor of growth protein 2|p32 20121230 -9606 3623 INHA - - HGNC:6065|MIM:147380|Ensembl:ENSG00000123999|HPRD:00933|Vega:OTTHUMG00000059237 2 2q33-q36 inhibin, alpha protein-coding INHA inhibin, alpha O A-inhibin subunit|inhibin alpha chain 20121230 -9606 3624 INHBA - EDF|FRP HGNC:6066|MIM:147290|Ensembl:ENSG00000122641|HPRD:00929|Vega:OTTHUMG00000023574 7 7p15-p13 inhibin, beta A protein-coding INHBA inhibin, beta A O FSH-releasing protein|Inhibin, beta-1|activin beta-A chain|erythroid differentiation factor|erythroid differentiation protein|follicle-stimulating hormone-releasing protein|inhibin beta A chain|inhibin, beta A (activin A, activin AB alpha polypeptide) 20121230 -9606 3625 INHBB - - HGNC:6067|MIM:147390|Ensembl:ENSG00000163083|HPRD:00934|Vega:OTTHUMG00000131437 2 2cen-q13 inhibin, beta B protein-coding INHBB inhibin, beta B O Inhibin, beta-2|activin AB beta polypeptide|activin beta-B chain|inhibin beta B chain 20121230 -9606 3626 INHBC - IHBC HGNC:6068|MIM:601233|Ensembl:ENSG00000175189|HPRD:03136|Vega:OTTHUMG00000169994 12 12q13.1 inhibin, beta C protein-coding INHBC inhibin, beta C O activin beta-C chain|inhibin beta C chain 20121230 -9606 3627 CXCL10 - C7|IFI10|INP10|IP-10|SCYB10|crg-2|gIP-10|mob-1 HGNC:10637|MIM:147310|Ensembl:ENSG00000169245|HPRD:00930|Vega:OTTHUMG00000160887 4 4q21 chemokine (C-X-C motif) ligand 10 protein-coding CXCL10 chemokine (C-X-C motif) ligand 10 O 10 kDa interferon gamma-induced protein|C-X-C motif chemokine 10|gamma IP10|gamma-IP10|interferon-inducible cytokine IP-10|protein 10 from interferon (gamma)-induced cell line|small inducible cytokine subfamily B (Cys-X-Cys), member 10|small-inducible cytokine B10 20121230 -9606 3628 INPP1 - - HGNC:6071|MIM:147263|Ensembl:ENSG00000151689|HPRD:00923|Vega:OTTHUMG00000132672 2 2q32 inositol polyphosphate-1-phosphatase protein-coding INPP1 inositol polyphosphate-1-phosphatase O IPP|IPPase|inositol polyphosphate 1-phosphatase 20121230 -9606 3629 INPP3 - - HGNC:6072 - - inositol polyphosphate-3-phosphatase protein-coding INPP3 inositol polyphosphate-3-phosphatase O - 20080828 -9606 3630 INS - IDDM2|ILPR|IRDN|MODY10 HGNC:6081|MIM:176730|Ensembl:ENSG00000254647|HPRD:01455|Vega:OTTHUMG00000009558 11 11p15.5 insulin protein-coding INS insulin O preproinsulin|proinsulin 20121230 -9606 3631 INPP4A - INPP4|TVAS1 HGNC:6074|MIM:600916|Ensembl:ENSG00000040933|HPRD:02949|Vega:OTTHUMG00000153106 2 2q11.2 inositol polyphosphate-4-phosphatase, type I, 107kDa protein-coding INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa O type I inositol 3,4-bisphosphate 4-phosphatase|type I inositol-3,4-bisphosphate 4-phosphatase 20121230 -9606 3632 INPP5A RP11-288G11.1 5PTASE HGNC:6076|MIM:600106|Ensembl:ENSG00000068383|HPRD:02521|Vega:OTTHUMG00000019293 10 10q26.3 inositol polyphosphate-5-phosphatase, 40kDa protein-coding INPP5A inositol polyphosphate-5-phosphatase, 40kDa O 43 kDa inositol polyphosphate 5-phophatase|CTCL tumor antigen HD-CL-02|InsP3 5-phosphatase|inositol trisphosphate-5-phosphatase, 40kD|type I inositol 1,4,5-trisphosphate 5-phosphatase|type I inositol-1,4,5-trisphosphate 5-phophatase|type I inositol-1,4,5-trisphosphate 5-phosphatase 20121230 -9606 3633 INPP5B RP11-109P14.7 5PTase HGNC:6077|MIM:147264|Ensembl:ENSG00000204084|HPRD:00924|Vega:OTTHUMG00000004436 1 1p34 inositol polyphosphate-5-phosphatase, 75kDa protein-coding INPP5B inositol polyphosphate-5-phosphatase, 75kDa O 75 kDa inositol polyphosphate-5-phosphatase|phosphoinositide 5-phosphatase|type II inositol 1,4,5-trisphosphate 5-phosphatase|type II inositol-1,4,5-trisphosphate 5-phosphatase 20121230 -9606 3635 INPP5D - SHIP|SHIP-1|SHIP1|SIP-145|hp51CN HGNC:6079|MIM:601582|Ensembl:ENSG00000168918|HPRD:09033|Vega:OTTHUMG00000133688 2 2q37.1 inositol polyphosphate-5-phosphatase, 145kDa protein-coding INPP5D inositol polyphosphate-5-phosphatase, 145kDa O SH2 containing inositol phosphatase|SH2 domain-containing inositol 5'-phosphatase 1|SH2 domain-containing inositol phosphatase 1|SH2 domain-containing inositol-5'-phosphatase 1|inositol polyphosphate-5-phosphatase of 145 kDa|p150Ship|phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1|phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1|signaling inositol polyphosphate 5 phosphatase SIP-145 20121230 -9606 3636 INPPL1 - SHIP2 HGNC:6080|MIM:600829|Ensembl:ENSG00000165458|HPRD:02900|Vega:OTTHUMG00000167879 11 11q13 inositol polyphosphate phosphatase-like 1 protein-coding INPPL1 inositol polyphosphate phosphatase-like 1 O 51C protein|INPPL-1|SH2 domain-containing inositol 5'-phosphatase 2|SH2 domain-containing inositol-5'-phosphatase 2|SHIP-2|phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2|phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2|protein 51C 20121230 -9606 3638 INSIG1 - CL-6|CL6 HGNC:6083|MIM:602055|Ensembl:ENSG00000186480|HPRD:03633|Vega:OTTHUMG00000151330 7 7q36 insulin induced gene 1 protein-coding INSIG1 insulin induced gene 1 O INSIG-1 membrane protein|insulin-induced gene 1 protein 20121230 -9606 3640 INSL3 - RLF|RLNL|ley-I-L HGNC:6086|MIM:146738|Ensembl:ENSG00000248099|HPRD:08854 19 19p13.2-p12 insulin-like 3 (Leydig cell) protein-coding INSL3 insulin-like 3 (Leydig cell) O insulin-like 3|leydig insulin -like hormone|leydig insulin-like peptide|relaxin-like factor b 20121230 -9606 3641 INSL4 - EPIL|PLACENTIN HGNC:6087|MIM:600910|Ensembl:ENSG00000120211|HPRD:02946|Vega:OTTHUMG00000019494 9 9p24 insulin-like 4 (placenta) protein-coding INSL4 insulin-like 4 (placenta) O early placenta insulin-like peptide|early placenta insulin-like peptide (EPIL)|insulin-like peptide 4 20121230 -9606 3642 INSM1 - IA-1|IA1 HGNC:6090|MIM:600010|Ensembl:ENSG00000173404|HPRD:02480|Vega:OTTHUMG00000032004 20 20p11.2 insulinoma-associated 1 protein-coding INSM1 insulinoma-associated 1 O insulinoma-associated protein 1|zinc finger protein IA-1 20121230 -9606 3643 INSR - CD220|HHF5 HGNC:6091|MIM:147670|Ensembl:ENSG00000171105|HPRD:00975 19 19p13.3-p13.2 insulin receptor protein-coding INSR insulin receptor O IR 20121230 -9606 3644 INSRL - - HGNC:6092 7 7p13-q22 insulin receptor-like protein-coding INSRL insulin receptor-like O - 20080828 -9606 3645 INSRR - IRR HGNC:6093|MIM:147671|Ensembl:ENSG00000027644|HPRD:00976|Vega:OTTHUMG00000041291 1 1q21-q23 insulin receptor-related receptor protein-coding INSRR insulin receptor-related receptor O IR-related receptor|insulin receptor-related protein 20121230 -9606 3646 EIF3E - EIF3-P48|EIF3S6|INT6|eIF3-p46 HGNC:3277|MIM:602210|Ensembl:ENSG00000104408|HPRD:03734|Vega:OTTHUMG00000164858 8 8q22-q23 eukaryotic translation initiation factor 3, subunit E protein-coding EIF3E eukaryotic translation initiation factor 3, subunit E O eIF-3 p48|eukaryotic translation initiation factor 3 subunit 6|eukaryotic translation initiation factor 3 subunit E|eukaryotic translation initiation factor 3, subunit 6 (48kD)|eukaryotic translation initiation factor 3, subunit 6 48kDa|mammary tumor-associated protein INT6|murine mammary tumor integration site 6 (oncogene homolog)|viral integration site protein INT-6 homolog 20121230 -9606 3647 EIF3EP1 - EIF3EP|EIF3S6P1|INT6P1 HGNC:6102 6 6q13 eukaryotic translation initiation factor 3, subunit E pseudogene 1 pseudo EIF3EP1 eukaryotic translation initiation factor 3, subunit E pseudogene 1 O - 20121230 -9606 3651 PDX1 - GSF|IDX-1|IPF1|IUF1|MODY4|PDX-1|STF-1 HGNC:6107|MIM:600733|Ensembl:ENSG00000139515|HPRD:02843|Vega:OTTHUMG00000016638 13 13q12.1 pancreatic and duodenal homeobox 1 protein-coding PDX1 pancreatic and duodenal homeobox 1 O IPF-1|IUF-1|glucose-sensitive factor|insulin promoter factor 1, homeodomain transcription factor|insulin upstream factor 1|islet/duodenum homeobox-1|pancreas/duodenum homeobox protein 1|pancreatic-duodenal homeobox factor 1|somatostatin transcription factor 1|somatostatin-transactivating factor 1 20121230 -9606 3652 IPP RP11-767N6.6 KLHL27 HGNC:6108|MIM:147485|Ensembl:ENSG00000197429|HPRD:00940|Vega:OTTHUMG00000008004 1 1p34-p32 intracisternal A particle-promoted polypeptide protein-coding IPP intracisternal A particle-promoted polypeptide O actin-binding protein IPP|kelch-like protein 27 20121230 -9606 3653 IPW - NCRNA00002 HGNC:6109|MIM:601491 15 15q11-q12 imprinted in Prader-Willi syndrome (non-protein coding) miscRNA IPW imprinted in Prader-Willi syndrome (non-protein coding) O - 20121230 -9606 3654 IRAK1 - IRAK|pelle HGNC:6112|MIM:300283|Ensembl:ENSG00000184216|HPRD:02235|Vega:OTTHUMG00000024228 X Xq28 interleukin-1 receptor-associated kinase 1 protein-coding IRAK1 interleukin-1 receptor-associated kinase 1 O IRAK-1|Pelle homolog 20121230 -9606 3655 ITGA6 - CD49f|ITGA6B|VLA-6 HGNC:6142|MIM:147556|Ensembl:ENSG00000091409|HPRD:00945|Vega:OTTHUMG00000132277 2 2q31.1 integrin, alpha 6 protein-coding ITGA6 integrin, alpha 6 O CD49 antigen-like family member F|integrin alpha-6|integrin alpha6B 20121230 -9606 3656 IRAK2 - IRAK-2 HGNC:6113|MIM:603304|Ensembl:ENSG00000134070|HPRD:04491|Vega:OTTHUMG00000155358 3 3p25.3 interleukin-1 receptor-associated kinase 2 protein-coding IRAK2 interleukin-1 receptor-associated kinase 2 O interleukin-1 receptor associated kinase-2|interleukin-1 receptor-associated kinase-like 2 20121230 -9606 3658 IREB2 - ACO3|IRP2|IRP2AD HGNC:6115|MIM:147582|Ensembl:ENSG00000136381|HPRD:08858|Vega:OTTHUMG00000143861 15 15q25.1 iron-responsive element binding protein 2 protein-coding IREB2 iron-responsive element binding protein 2 O IRE-BP 2|iron regulatory protein 2|iron-responsive element-binding protein 2 20121230 -9606 3659 IRF1 - IRF-1|MAR HGNC:6116|MIM:147575|Ensembl:ENSG00000125347|HPRD:00961|Vega:OTTHUMG00000059497 5 5q31.1 interferon regulatory factor 1 protein-coding IRF1 interferon regulatory factor 1 O - 20121230 -9606 3660 IRF2 - IRF-2 HGNC:6117|MIM:147576|Ensembl:ENSG00000168310|HPRD:00962|Vega:OTTHUMG00000160606 4 4q34.1-q35.1 interferon regulatory factor 2 protein-coding IRF2 interferon regulatory factor 2 O - 20121230 -9606 3661 IRF3 - - HGNC:6118|MIM:603734|Ensembl:ENSG00000126456|HPRD:04769 19 19q13.3-q13.4 interferon regulatory factor 3 protein-coding IRF3 interferon regulatory factor 3 O - 20121230 -9606 3662 IRF4 - LSIRF|MUM1|NF-EM5 HGNC:6119|MIM:601900|Ensembl:ENSG00000137265|HPRD:03543|Vega:OTTHUMG00000016294 6 6p25-p23 interferon regulatory factor 4 protein-coding IRF4 interferon regulatory factor 4 O lymphocyte-specific interferon regulatory factor|multiple myeloma oncogene 1 20121230 -9606 3663 IRF5 - SLEB10 HGNC:6120|MIM:607218|Ensembl:ENSG00000128604|HPRD:06240|Vega:OTTHUMG00000158410 7 7q32 interferon regulatory factor 5 protein-coding IRF5 interferon regulatory factor 5 O IRF-5 20121230 -9606 3664 IRF6 - LPS|OFC6|PIT|PPS|VWS|VWS1 HGNC:6121|MIM:607199|Ensembl:ENSG00000117595|HPRD:06227|Vega:OTTHUMG00000036521 1 1q32.3-q41 interferon regulatory factor 6 protein-coding IRF6 interferon regulatory factor 6 O - 20121230 -9606 3665 IRF7 - IRF-7H|IRF7A HGNC:6122|MIM:605047|Ensembl:ENSG00000185507|HPRD:05441|Vega:OTTHUMG00000132019 11 11p15.5 interferon regulatory factor 7 protein-coding IRF7 interferon regulatory factor 7 O IRF-7|interferon regulatory factor-7H 20121230 -9606 3667 IRS1 - HIRS-1 HGNC:6125|MIM:147545|Ensembl:ENSG00000169047|HPRD:00943|Vega:OTTHUMG00000133179 2 2q36 insulin receptor substrate 1 protein-coding IRS1 insulin receptor substrate 1 O IRS-1 20121230 -9606 3669 ISG20 - CD25|HEM45 HGNC:6130|MIM:604533|Ensembl:ENSG00000172183|HPRD:05169|Vega:OTTHUMG00000148679 15 15q26 interferon stimulated exonuclease gene 20kDa protein-coding ISG20 interferon stimulated exonuclease gene 20kDa O estrogen-regulated transcript 45 protein|interferon-stimulated gene 20 kDa protein|promyelocytic leukemia nuclear body-associated protein ISG20 20121230 -9606 3670 ISL1 - ISLET1|Isl-1 HGNC:6132|MIM:600366|Ensembl:ENSG00000016082|HPRD:02650|Vega:OTTHUMG00000162281 5 5q11.1 ISL LIM homeobox 1 protein-coding ISL1 ISL LIM homeobox 1 O ISL1 transcription factor, LIM/homeodomain|insulin gene enhancer protein ISL-1|islet-1 20121230 -9606 3671 ISLR UNQ189/PRO215 HsT17563 HGNC:6133|MIM:602059|Ensembl:ENSG00000129009|HPRD:03636|Vega:OTTHUMG00000137623 15 15q23-q24 immunoglobulin superfamily containing leucine-rich repeat protein-coding ISLR immunoglobulin superfamily containing leucine-rich repeat O immunoglobulin superfamily containing leucine-rich repeat protein 20121230 -9606 3672 ITGA1 - CD49a|VLA1 HGNC:6134|MIM:192968|Ensembl:ENSG00000213949|HPRD:01892|Vega:OTTHUMG00000131163 5 5q11.2 integrin, alpha 1 protein-coding ITGA1 integrin, alpha 1 O CD49 antigen-like family member A|VLA-1|integrin alpha-1|laminin and collagen receptor|very late activation protein 1 20121230 -9606 3673 ITGA2 - BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 HGNC:6137|MIM:192974|Ensembl:ENSG00000164171|HPRD:01893|Vega:OTTHUMG00000131165 5 5q11.2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) protein-coding ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) O CD49 antigen-like family member B|VLA2 receptor, alpha-2 subunit|collagen receptor|human platelet alloantigen system 5|integrin alpha-2|platelet antigen Br|platelet glycoprotein GPIa|platelet membrane glycoprotein Ia|very late activation protein 2 receptor, alpha-2 subunit 20121230 -9606 3674 ITGA2B - BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GTA|HPA3 HGNC:6138|MIM:607759|Ensembl:ENSG00000005961|HPRD:06377|Vega:OTTHUMG00000177935 17 17q21.32 integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) protein-coding ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) O GPalpha IIb|integrin alpha-IIb|platelet fibrinogen receptor, alpha subunit|platelet membrane glycoprotein IIb|platelet-specific antigen BAK 20121230 -9606 3675 ITGA3 - CD49C|GAP-B3|GAPB3|MSK18|VCA-2|VL3A|VLA3a HGNC:6139|MIM:605025|Ensembl:ENSG00000005884|HPRD:05431|Vega:OTTHUMG00000161890 17 17q21.33 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) protein-coding ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) O CD49 antigen-like family member C|FRP-2|VLA-3 subunit alpha|antigen identified by monoclonal antibody J143|galactoprotein B3|integrin alpha-3|very late activation protein 3 receptor, alpha-3 subunit 20121230 -9606 3676 ITGA4 - CD49D|IA4 HGNC:6140|MIM:192975|Ensembl:ENSG00000115232|HPRD:01894|Vega:OTTHUMG00000154212 2 2q31.3 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) protein-coding ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) O 269C wild type|CD49 antigen-like family member D|VLA-4 subunit alpha|antigen CD49D, alpha-4 subunit of VLA-4 receptor|integrin alpha 4|integrin alpha-4|integrin alpha-4 subunit|integrin alpha-IV|very late activation protein 4 receptor, alpha 4 subunit 20121230 -9606 3678 ITGA5 - CD49e|FNRA|VLA5A HGNC:6141|MIM:135620|Ensembl:ENSG00000161638|HPRD:00627|Vega:OTTHUMG00000169841 12 12q11-q13 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) protein-coding ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) O CD49 antigen-like family member E|VLA-5|fibronectin receptor subunit alpha|fibronectin receptor, alpha subunit|integrin alpha-5|integrin alpha-F|very late activation protein 5, alpha subunit 20121230 -9606 3679 ITGA7 UNQ406/PRO768 - HGNC:6143|MIM:600536|Ensembl:ENSG00000135424|HPRD:02761|Vega:OTTHUMG00000170699 12 12q13 integrin, alpha 7 protein-coding ITGA7 integrin, alpha 7 O integrin alpha 7 chain|integrin alpha-7 20121230 -9606 3680 ITGA9 - ALPHA-RLC|ITGA4L|RLC HGNC:6145|MIM:603963|Ensembl:ENSG00000144668|HPRD:04910|Vega:OTTHUMG00000130815 3 3p21.3 integrin, alpha 9 protein-coding ITGA9 integrin, alpha 9 O integrin alpha-9|integrin alpha-RLC 20121230 -9606 3681 ITGAD - ADB2|CD11D HGNC:6146|MIM:602453|Ensembl:ENSG00000156886|Vega:OTTHUMG00000176614 16 16p11.2 integrin, alpha D protein-coding ITGAD integrin, alpha D O CD11 antigen-like family member D|integrin alpha-D|leukointegrin alpha D 20121230 -9606 3682 ITGAE - CD103|HUMINAE HGNC:6147|MIM:604682|Ensembl:ENSG00000083457|HPRD:05249|Vega:OTTHUMG00000177634 17 17p13 integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) protein-coding ITGAE integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) O HML-1 antigen|antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide|integrin alpha-E|integrin alpha-IEL|mucosal lymphocyte 1 antigen 20121230 -9606 3683 ITGAL - CD11A|LFA-1|LFA1A HGNC:6148|MIM:153370|Ensembl:ENSG00000005844|HPRD:01079|Vega:OTTHUMG00000176964 16 16p11.2 integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) protein-coding ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) O CD11 antigen-like family member A|LFA-1 alpha|LFA-1A|antigen CD11A (p180), lymphocyte function-associated antigen 1, alpha polypeptide|integrin alpha-L|integrin gene promoter|leukocyte adhesion glycoprotein LFA-1 alpha chain|leukocyte function-associated molecule 1 alpha chain|lymphocyte function-associated antigen 1 20121230 -9606 3684 ITGAM - CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6 HGNC:6149|MIM:120980|Ensembl:ENSG00000169896|HPRD:00411|Vega:OTTHUMG00000176612 16 16p11.2 integrin, alpha M (complement component 3 receptor 3 subunit) protein-coding ITGAM integrin, alpha M (complement component 3 receptor 3 subunit) O CD11 antigen-like family member B|CR-3 alpha chain|antigen CD11b (p170)|cell surface glycoprotein MAC-1 subunit alpha|integrin alpha-M|leukocyte adhesion receptor MO1|macrophage antigen alpha polypeptide|neutrophil adherence receptor alpha-M subunit 20121230 -9606 3685 ITGAV - CD51|MSK8|VNRA|VTNR HGNC:6150|MIM:193210|Ensembl:ENSG00000138448|HPRD:01903|Vega:OTTHUMG00000132635 2 2q31-q32 integrin, alpha V protein-coding ITGAV integrin, alpha V O antigen identified by monoclonal antibody L230|integrin alpha-V|integrin alphaVbeta3|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)|vitronectin receptor subunit alpha 20121230 -9606 3686 ITGAW - - HGNC:6151 - - integrin, alpha W protein-coding ITGAW integrin, alpha W O - 20080828 -9606 3687 ITGAX - CD11C|SLEB6 HGNC:6152|MIM:151510|Ensembl:ENSG00000140678|HPRD:01051|Vega:OTTHUMG00000132465 16 16p11.2 integrin, alpha X (complement component 3 receptor 4 subunit) protein-coding ITGAX integrin, alpha X (complement component 3 receptor 4 subunit) O CD11 antigen-like family member C|integrin alpha-X|integrin, alpha X (antigen CD11C (p150), alpha polypeptide)|leu M5, alpha subunit|leukocyte adhesion glycoprotein p150,95 alpha chain|leukocyte adhesion receptor p150,95|leukocyte surface antigen p150,95, alpha subunit|myeloid membrane antigen, alpha subunit|p150 95 integrin alpha chain 20121230 -9606 3688 ITGB1 RP11-479G22.2 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB HGNC:6153|MIM:135630|Ensembl:ENSG00000150093|HPRD:00628|Vega:OTTHUMG00000017928 10 10p11.2 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) O integrin VLA-4 beta subunit|integrin beta-1|very late activation protein, beta polypeptide 20121230 -9606 3689 ITGB2 - CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7 HGNC:6155|MIM:600065|Ensembl:ENSG00000160255|HPRD:02506|Vega:OTTHUMG00000090257 21 21q22.3 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) protein-coding ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) O cell surface adhesion glycoprotein LFA-1/CR3/P150,959 beta subunit precursor)|cell surface adhesion glycoproteins LFA-1/CR3/p150,95 subunit beta|complement receptor C3 beta-subunit|complement receptor C3 subunit beta|integrin beta chain, beta 2|integrin beta-2|leukocyte cell adhesion molecule CD18|leukocyte-associated antigens CD18/11A, CD18/11B, CD18/11C 20121230 -9606 3690 ITGB3 - BDPLT2|CD61|GP3A|GPIIIa|GT HGNC:6156|MIM:173470|Ensembl:ENSG00000259207|Ensembl:ENSG00000259753|HPRD:01428|Vega:OTTHUMG00000171956|Vega:OTTHUMG00000171957 17 17q21.32 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) O integrin beta-3|platelet membrane glycoprotein IIIa 20121230 -9606 3691 ITGB4 - CD104 HGNC:6158|MIM:147557|Ensembl:ENSG00000132470|HPRD:00946|Vega:OTTHUMG00000179814 17 17q25 integrin, beta 4 protein-coding ITGB4 integrin, beta 4 O CD104 antigen|GP150|integrin beta-4|integrin beta-4 subunit 20121230 -9606 3692 EIF6 RP4-614O4.1 CAB|EIF3A|ITGB4BP|b(2)gcn|eIF-6|p27(BBP)|p27BBP HGNC:6159|MIM:602912|Ensembl:ENSG00000242372|HPRD:04221|Vega:OTTHUMG00000032328 20 20q12 eukaryotic translation initiation factor 6 protein-coding EIF6 eukaryotic translation initiation factor 6 O B4 integrin interactor|eukaryotic translation initiation factor 3A|p27 beta-4 integrin-binding protein 20121230 -9606 3693 ITGB5 - - HGNC:6160|MIM:147561|Ensembl:ENSG00000082781|HPRD:00949|Vega:OTTHUMG00000159432 3 3q21.2 integrin, beta 5 protein-coding ITGB5 integrin, beta 5 O integrin beta-5 20121230 -9606 3694 ITGB6 - - HGNC:6161|MIM:147558|Ensembl:ENSG00000115221|HPRD:00947|Vega:OTTHUMG00000132026 2 2q24.2 integrin, beta 6 protein-coding ITGB6 integrin, beta 6 O integrin beta-6 20121230 -9606 3695 ITGB7 - - HGNC:6162|MIM:147559|Ensembl:ENSG00000139626|HPRD:00948|Vega:OTTHUMG00000169775 12 12q13.13 integrin, beta 7 protein-coding ITGB7 integrin, beta 7 O gut homing receptor beta subunit|integrin beta 7 subunit|integrin beta-7 20121230 -9606 3696 ITGB8 - - HGNC:6163|MIM:604160|Ensembl:ENSG00000105855|HPRD:05001|Vega:OTTHUMG00000023594 7 7p21.1 integrin, beta 8 protein-coding ITGB8 integrin, beta 8 O integrin beta-8 20121230 -9606 3697 ITIH1 - H1P|IATIH|IGHEP1|ITI-HC1|ITIH|SHAP HGNC:6166|MIM:147270|Ensembl:ENSG00000055957|HPRD:00927|Vega:OTTHUMG00000150312 3 3p21.1 inter-alpha-trypsin inhibitor heavy chain 1 protein-coding ITIH1 inter-alpha-trypsin inhibitor heavy chain 1 O ITI heavy chain H1|inter-alpha (globulin) inhibitor H1|inter-alpha (globulin) inhibitor, H1 polypeptide|inter-alpha-inhibitor heavy chain 1|inter-alpha-trypsin inhibitor complex component III|inter-alpha-trypsin inhibitor heavy chain H1|serum-derived hyaluronan-associated protein 20121230 -9606 3698 ITIH2 RP11-264C14.2 H2P|SHAP HGNC:6167|MIM:146640|Ensembl:ENSG00000151655|HPRD:00890|Vega:OTTHUMG00000017633 10 10p15 inter-alpha-trypsin inhibitor heavy chain 2 protein-coding ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 O ITI heavy chain H2|ITI-HC2|inter-alpha (globulin) inhibitor H2|inter-alpha (globulin) inhibitor, H2 polypeptide|inter-alpha-inhibitor heavy chain 2|inter-alpha-trypsin inhibitor complex component II|inter-alpha-trypsin inhibitor heavy chain H2|serum-derived hyaluronan-associated protein 20121230 -9606 3699 ITIH3 - H3P HGNC:6168|MIM:146650|Ensembl:ENSG00000162267|HPRD:00891|Vega:OTTHUMG00000158956 3 3p21.1 inter-alpha-trypsin inhibitor heavy chain 3 protein-coding ITIH3 inter-alpha-trypsin inhibitor heavy chain 3 O ITI heavy chain H3|ITI-HC3|SHAP|inter-alpha (globulin) inhibitor H3|inter-alpha (globulin) inhibitor, H3 polypeptide|inter-alpha-inhibitor heavy chain 3|inter-alpha-trypsin inhibitor heavy chain H3|pre-alpha (globulin) inhibitor, H3 polypeptide|serum-derived hyaluronan-associated protein 20121230 -9606 3700 ITIH4 PRO1851 GP120|H4P|IHRP|ITI-HC4|ITIHL1|PK-120|PK120 HGNC:6169|MIM:600564|Ensembl:ENSG00000055955|HPRD:02781|Vega:OTTHUMG00000159023 3 3p21.1 inter-alpha-trypsin inhibitor heavy chain family, member 4 protein-coding ITIH4 inter-alpha-trypsin inhibitor heavy chain family, member 4 O ITI heavy chain H4|inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein)|inter-alpha-inhibitor heavy chain 4|inter-alpha-trypsin inhibitor family heavy chain-related protein|inter-alpha-trypsin inhibitor heavy chain H4|inter-alpha-trypsin inhibitor, heavy chain-like, 1|plasma kallikrein-sensitive glycoprotein 120 20121230 -9606 3702 ITK - EMT|LYK|PSCTK2 HGNC:6171|MIM:186973|Ensembl:ENSG00000113263|HPRD:01746|Vega:OTTHUMG00000130245 5 5q31-q32 IL2-inducible T-cell kinase protein-coding ITK IL2-inducible T-cell kinase O IL-2-inducible T cell kinase|IL-2-inducible T-cell kinase|T-cell-specific kinase|homolog of mouse T-cell itk/tsk|interleukin-2-inducible T cell kinase|interleukin-2-inducible T-cell kinase|kinase EMT|tyrosine-protein kinase ITK/TSK|tyrosine-protein kinase LYK 20121230 -9606 3703 STT3A - ITM1|STT3-A|TMC HGNC:6172|MIM:601134|Ensembl:ENSG00000134910|HPRD:03086|Vega:OTTHUMG00000165852 11 11q23.3 STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) protein-coding STT3A STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) O B5|dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A|integral membrane protein 1|integral transmembrane protein 1|oligosaccharyl transferase subunit STT3A|transmembrane conserved|transmembrane protein TMC 20121230 -9606 3704 ITPA My049 C20orf37|HLC14-06-P|dJ794I6.3 HGNC:6176|MIM:147520|Ensembl:ENSG00000125877|HPRD:08856|Vega:OTTHUMG00000031738 20 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) protein-coding ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase) O ITPase|NTPase|inosine triphosphatase-A|inosine triphosphate pyrophosphatase|inosine triphosphate pyrophosphohydrolase|non-canonical purine NTP pyrophosphatase|non-standard purine NTP pyrophosphatase|nucleoside-triphosphate diphosphatase|putative oncogene protein HLC14-06-P 20121230 -9606 3705 ITPK1 - ITRPK1 HGNC:6177|MIM:601838|Ensembl:ENSG00000100605|HPRD:03501|Vega:OTTHUMG00000171226 14 14q31 inositol-tetrakisphosphate 1-kinase protein-coding ITPK1 inositol-tetrakisphosphate 1-kinase O inositol 1,3,4-triphosphate 5/6 kinase|inositol 1,3,4-trisphosphate 5/6 kinase|inositol 1,3,4-trisphosphate 5/6-kinase|inositol-triphosphate 5/6-kinase|ins(1,3,4)P(3) 5/6-kinase 20121230 -9606 3706 ITPKA - IP3-3KA|IP3KA HGNC:6178|MIM:147521|Ensembl:ENSG00000137825|HPRD:00941|Vega:OTTHUMG00000130343 15 15q15.1 inositol-trisphosphate 3-kinase A protein-coding ITPKA inositol-trisphosphate 3-kinase A O IP3 3-kinase A|IP3K A|inositol 1,4,5-trisphosphate 3-kinase A|insP 3-kinase A 20121230 -9606 3707 ITPKB - IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 HGNC:6179|MIM:147522|Ensembl:ENSG00000143772|HPRD:00942|Vega:OTTHUMG00000037582 1 1q42.13 inositol-trisphosphate 3-kinase B protein-coding ITPKB inositol-trisphosphate 3-kinase B O IP3 3-kinase B|IP3K B|inositol 1,4,5-trisphosphate 3-kinase B|insP 3-kinase B|proliferation-inducing protein 37 20121230 -9606 3708 ITPR1 - INSP3R1|IP3R|IP3R1|SCA15|SCA16 HGNC:6180|MIM:147265|Ensembl:ENSG00000150995|HPRD:00925|Vega:OTTHUMG00000154996 3 3p26.1 inositol 1,4,5-trisphosphate receptor, type 1 protein-coding ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 O IP3 receptor|IP3R 1|inositol 1,4,5-triphosphate receptor, type 1|inositol 1,4,5-trisphosphate receptor type 1|type 1 InsP3 receptor|type 1 inositol 1,4,5-trisphosphate receptor 20121230 -9606 3709 ITPR2 - IP3R2 HGNC:6181|MIM:600144|Ensembl:ENSG00000123104|HPRD:02536|Vega:OTTHUMG00000169181 12 12p11 inositol 1,4,5-trisphosphate receptor, type 2 protein-coding ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 O IP3 receptor|IP3R 2|inositol 1,4,5-triphosphate receptor, type 2|inositol 1,4,5-trisphosphate receptor type 2|insP3R2|type 2 InsP3 receptor|type 2 inositol 1,4,5-trisphosphate receptor 20121230 -9606 3710 ITPR3 - IP3R|IP3R3 HGNC:6182|MIM:147267|Ensembl:ENSG00000096433|HPRD:00926|Vega:OTTHUMG00000014532 6 6p21 inositol 1,4,5-trisphosphate receptor, type 3 protein-coding ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 O IP3 receptor|inositol 1,4,5-triphosphate receptor, type 3|inositol 1,4,5-trisphosphate receptor type 3|insP3R3|type 3 InsP3 receptor 20121230 -9606 3712 IVD - ACAD2 HGNC:6186|MIM:607036|Ensembl:ENSG00000128928|HPRD:09516|Vega:OTTHUMG00000129984 15 15q14-q15 isovaleryl-CoA dehydrogenase protein-coding IVD isovaleryl-CoA dehydrogenase O isovaleryl CoA dehydrogenase|isovaleryl Coenzyme A dehydrogenase|isovaleryl-CoA dehydrogenase, mitochondrial 20121230 -9606 3713 IVL - - HGNC:6187|MIM:147360|Ensembl:ENSG00000163207|HPRD:00931|Vega:OTTHUMG00000012451 1 1q21 involucrin protein-coding IVL involucrin O - 20121230 -9606 3714 JAG2 - HJ2|SER2 HGNC:6189|MIM:602570|Ensembl:ENSG00000184916|HPRD:03981|Vega:OTTHUMG00000140172 14 14q32 jagged 2 protein-coding JAG2 jagged 2 O protein jagged-2 20121230 -9606 3716 JAK1 - JAK1A|JAK1B|JTK3 HGNC:6190|MIM:147795|Ensembl:ENSG00000162434|HPRD:00992|Vega:OTTHUMG00000009310 1 1p32.3-p31.3 Janus kinase 1 protein-coding JAK1 Janus kinase 1 O tyrosine-protein kinase JAK1 20121230 -9606 3717 JAK2 - JTK10|THCYT3 HGNC:6192|MIM:147796|Ensembl:ENSG00000096968|HPRD:00993|Vega:OTTHUMG00000019490 9 9p24 Janus kinase 2 protein-coding JAK2 Janus kinase 2 O JAK-2|Janus kinase 2 (a protein tyrosine kinase)|tyrosine-protein kinase JAK2 20121230 -9606 3718 JAK3 - JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK HGNC:6193|MIM:600173|Ensembl:ENSG00000105639|HPRD:02547|Vega:OTTHUMG00000165648 19 19p13.1 Janus kinase 3 protein-coding JAK3 Janus kinase 3 O Janus kinase 3 (a protein tyrosine kinase, leukocyte)|leukocyte Janus kinase|tyrosine-protein kinase JAK3 20121230 -9606 3719 JBS - - HGNC:6194|MIM:147791 11 11q24.1 Jacobsen syndrome unknown JBS Jacobsen syndrome O - 20120902 -9606 3720 JARID2 - JMJ HGNC:6196|MIM:601594|Ensembl:ENSG00000008083|HPRD:03355|Vega:OTTHUMG00000014293 6 6p24-p23 jumonji, AT rich interactive domain 2 protein-coding JARID2 jumonji, AT rich interactive domain 2 O jumonji homolog|jumonji-like protein|jumonji/ARID domain-containing protein 2|protein Jumonji 20121230 -9606 3725 JUN - AP-1|AP1|c-Jun HGNC:6204|MIM:165160|Ensembl:ENSG00000177606|HPRD:01302|Vega:OTTHUMG00000008376 1 1p32-p31 jun proto-oncogene protein-coding JUN jun proto-oncogene O Jun activation domain binding protein|activator protein 1|enhancer-binding protein AP1|jun oncogene|p39|proto-oncogene c-Jun|transcription factor AP-1|v-jun avian sarcoma virus 17 oncogene homolog|v-jun sarcoma virus 17 oncogene homolog 20121230 -9606 3726 JUNB - AP-1 HGNC:6205|MIM:165161|Ensembl:ENSG00000171223|HPRD:01303|Vega:OTTHUMG00000180373 19 19p13.2 jun B proto-oncogene protein-coding JUNB jun B proto-oncogene O activator protein 1|transcription factor jun-B 20121230 -9606 3727 JUND - AP-1 HGNC:6206|MIM:165162|Ensembl:ENSG00000130522|HPRD:01304 19 19p13.2 jun D proto-oncogene protein-coding JUND jun D proto-oncogene O JunD-FL isoform|activator protein 1|transcription factor jun-D 20121230 -9606 3728 JUP - ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB HGNC:6207|MIM:173325|Ensembl:ENSG00000173801|HPRD:01414|Vega:OTTHUMG00000133494 17 17q21 junction plakoglobin protein-coding JUP junction plakoglobin O catenin (cadherin-associated protein), gamma 80kDa|desmoplakin III|desmoplakin-3 20121230 -9606 3729 K12T - - HGNC:6209|MIM:187310 14 - K12 temperature sensitivity complementing unknown K12T K12 temperature sensitivity complementing O - 20110215 -9606 3730 KAL1 - ADMLX|HH1|HHA|KAL|KALIG-1|KMS HGNC:6211|MIM:300836|Ensembl:ENSG00000011201|HPRD:02393|Vega:OTTHUMG00000021107 X Xp22.32 Kallmann syndrome 1 sequence protein-coding KAL1 Kallmann syndrome 1 sequence O Kallmann syndrome interval gene 1|Kallmann syndrome-1 sequence (anosmin-1)|adhesion molecule-like X-linked|anosmin-1|kallmann syndrome protein 20121230 -9606 3732 CD82 - 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 HGNC:6210|MIM:600623|Ensembl:ENSG00000085117|HPRD:09004|Vega:OTTHUMG00000166472 11 11p11.2 CD82 molecule protein-coding CD82 CD82 molecule O C33 antigen|CD82 antigen|inducible membrane protein R2|kangai 1 (suppression of tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte antigen, antigen detected by monoclonal and antibody IA4))|metastasis suppressor Kangai-1|tetraspanin-27|tspan-27 20121230 -9606 3734 KALP - ADMLY|KAL-Y HGNC:6214 Y Yq11 Kallmann syndrome sequence pseudogene pseudo KALP Kallmann syndrome sequence pseudogene O - 20121230 -9606 3735 KARS - CMTRIB|KARS1|KARS2|KRS HGNC:6215|MIM:601421|Ensembl:ENSG00000065427|HPRD:03249|Vega:OTTHUMG00000137609 16 16q23.1 lysyl-tRNA synthetase protein-coding KARS lysyl-tRNA synthetase O lysRS|lysine tRNA ligase|lysine--tRNA ligase 20121230 -9606 3736 KCNA1 - AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 HGNC:6218|MIM:176260|Ensembl:ENSG00000111262|HPRD:08885|Vega:OTTHUMG00000044398 12 12p13.32 potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) protein-coding KCNA1 potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) O potassium voltage-gated channel subfamily A member 1|voltage-gated K(+) channel HuKI|voltage-gated potassium channel HBK1|voltage-gated potassium channel subunit Kv1.1 20121230 -9606 3737 KCNA2 RP11-284N8.1 HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 HGNC:6220|MIM:176262|Ensembl:ENSG00000177301|HPRD:01443|Vega:OTTHUMG00000011567 1 1p13 potassium voltage-gated channel, shaker-related subfamily, member 2 protein-coding KCNA2 potassium voltage-gated channel, shaker-related subfamily, member 2 O potassium voltage-gated channel subfamily A member 2|voltage-gated K(+) channel HuKIV|voltage-gated potassium channel HBK5|voltage-gated potassium channel protein Kv1.2|voltage-gated potassium channel subunit Kv1.2 20121230 -9606 3738 KCNA3 - HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 HGNC:6221|MIM:176263|Ensembl:ENSG00000177272|HPRD:15937|Vega:OTTHUMG00000034493 1 1p13.3 potassium voltage-gated channel, shaker-related subfamily, member 3 protein-coding KCNA3 potassium voltage-gated channel, shaker-related subfamily, member 3 O potassium channel 3|potassium voltage-gated channel subfamily A member 3|type n potassium channel|voltage-gated K(+) channel HuKIII|voltage-gated potassium channel protein Kv1.3|voltage-gated potassium channel subunit Kv1.3 20121230 -9606 3739 KCNA4 - HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 HGNC:6222|MIM:176266|Ensembl:ENSG00000182255|HPRD:01444|Vega:OTTHUMG00000166144 11 11p14 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding KCNA4 potassium voltage-gated channel, shaker-related subfamily, member 4 O cardiac potassium channel|fetal skeletal muscle potassium channel|potassium channel 2|potassium voltage-gated channel subfamily A member 4|rapidly inactivating potassium channel|shaker-related potassium channel Kv1.4|type A potassium channel|voltage-gated K(+) channel HuKII|voltage-gated potassium channel HBK4|voltage-gated potassium channel HK1|voltage-gated potassium channel subunit Kv1.4 20121230 -9606 3741 KCNA5 - ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 HGNC:6224|MIM:176267|Ensembl:ENSG00000130037|HPRD:08888|Vega:OTTHUMG00000168232 12 12p13 potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding KCNA5 potassium voltage-gated channel, shaker-related subfamily, member 5 O cardiac potassium channel|insulinoma and islet potassium channel|potassium channel 1|potassium voltage-gated channel subfamily A member 5|voltage-gated potassium channel HK2|voltage-gated potassium channel protein Kv1.5|voltage-gated potassium channel subunit Kv1.5 20121230 -9606 3742 KCNA6 - HBK2|KV1.6 HGNC:6225|MIM:176257|Ensembl:ENSG00000151079|HPRD:08884 12 12p13 potassium voltage-gated channel, shaker-related subfamily, member 6 protein-coding KCNA6 potassium voltage-gated channel, shaker-related subfamily, member 6 O human brain potassium channel-2|potassium voltage-gated channel subfamily A member 6|voltage-gated potassium channel HBK2|voltage-gated potassium channel protein Kv1.6|voltage-gated potassium channel subunit Kv1.6 20121230 -9606 3743 KCNA7 - HAK6|KV1.7 HGNC:6226|MIM:176268|Ensembl:ENSG00000104848|HPRD:01445 19 19q13.3 potassium voltage-gated channel, shaker-related subfamily, member 7 protein-coding KCNA7 potassium voltage-gated channel, shaker-related subfamily, member 7 O potassium voltage-gated channel subfamily A member 7|voltage-dependent potassium channel Kv1.7|voltage-gated potassium channel KCNA7|voltage-gated potassium channel subunit Kv1.7 20121230 -9606 3744 KCNA10 - Kcn1|Kv1.8 HGNC:6219|MIM:602420|Ensembl:ENSG00000143105|HPRD:03882|Vega:OTTHUMG00000022785 1 1p13.1 potassium voltage-gated channel, shaker-related subfamily, member 10 protein-coding KCNA10 potassium voltage-gated channel, shaker-related subfamily, member 10 O cyclic GMP gated potassium channel|potassium voltage-gated channel subfamily A member 10|voltage-gated potassium channel subunit Kv1.8 20121230 -9606 3745 KCNB1 - DRK1|KV2.1|h-DRK1 HGNC:6231|MIM:600397|Ensembl:ENSG00000158445|HPRD:08983|Vega:OTTHUMG00000033051 20 20q13.2 potassium voltage-gated channel, Shab-related subfamily, member 1 protein-coding KCNB1 potassium voltage-gated channel, Shab-related subfamily, member 1 O delayed rectifier potassium channel 1|delayed rectifier potassium channel Kv2.1|h-DRK1 K(+) channel|potassium channel protein DRK1|potassium voltage-gated channel subfamily B member 1|voltage-gated potassium channel subunit Kv2.1 20121230 -9606 3746 KCNC1 - KV3.1|KV4|NGK2 HGNC:6233|MIM:176258|Ensembl:ENSG00000129159|HPRD:15936|Vega:OTTHUMG00000166359 11 11p15 potassium voltage-gated channel, Shaw-related subfamily, member 1 protein-coding KCNC1 potassium voltage-gated channel, Shaw-related subfamily, member 1 O potassium voltage-gated channel subfamily C member 1|voltage-gated potassium channel protein KV3.1|voltage-gated potassium channel subunit Kv3.1|voltage-gated potassium channel subunit Kv4 20121230 -9606 3747 KCNC2 - KV3.2 HGNC:6234|MIM:176256|Ensembl:ENSG00000166006|HPRD:08883|Vega:OTTHUMG00000169717 12 12q14.1 potassium voltage-gated channel, Shaw-related subfamily, member 2 protein-coding KCNC2 potassium voltage-gated channel, Shaw-related subfamily, member 2 O potassium voltage-gated channel subfamily C member 2|voltage-gated potassium channel Kv3.2 20121230 -9606 3748 KCNC3 - KSHIIID|KV3.3|SCA13 HGNC:6235|MIM:176264|Ensembl:ENSG00000131398|HPRD:08886|Vega:OTTHUMG00000044580 19 19q13.33 potassium voltage-gated channel, Shaw-related subfamily, member 3 protein-coding KCNC3 potassium voltage-gated channel, Shaw-related subfamily, member 3 O Shaw-related voltage-gated potassium channel protein 3|potassium voltage-gated channel subfamily C member 3|voltage-gated potassium channel protein KV3.3|voltage-gated potassium channel subunit Kv3.3 20121230 -9606 3749 KCNC4 - C1orf30|HKSHIIIC|KSHIIIC|KV3.4 HGNC:6236|MIM:176265|Ensembl:ENSG00000116396|HPRD:08887|Vega:OTTHUMG00000011037 1 1p21 potassium voltage-gated channel, Shaw-related subfamily, member 4 protein-coding KCNC4 potassium voltage-gated channel, Shaw-related subfamily, member 4 O K+ channel subunit|potassium voltage-gated channel subfamily C member 4|voltage-gated potassium channel subunit KV3.4 20121230 -9606 3750 KCND1 - KV4.1 HGNC:6237|MIM:300281|Ensembl:ENSG00000102057|HPRD:02233|Vega:OTTHUMG00000024127 X Xp11.23 potassium voltage-gated channel, Shal-related subfamily, member 1 protein-coding KCND1 potassium voltage-gated channel, Shal-related subfamily, member 1 O potassium voltage-gated channel subfamily D member 1|shal-type potassium channel|voltage-gated potassium channel Kv4.1|voltage-gated potassium channel subunit Kv4.1 20121230 -9606 3751 KCND2 - KV4.2|RK5 HGNC:6238|MIM:605410|Ensembl:ENSG00000184408|HPRD:09254|Vega:OTTHUMG00000156989 7 7q31 potassium voltage-gated channel, Shal-related subfamily, member 2 protein-coding KCND2 potassium voltage-gated channel, Shal-related subfamily, member 2 O potassium voltage-gated channel subfamily D member 2|voltage-gated potassium channel Kv4.2|voltage-gated potassium channel subunit Kv4.2|voltage-sensitive potassium channel 20121230 -9606 3752 KCND3 RP4-773A18.7 KCND3L|KCND3S|KSHIVB|KV4.3 HGNC:6239|MIM:605411|Ensembl:ENSG00000171385|HPRD:16104|Vega:OTTHUMG00000011989 1 1p13.3 potassium voltage-gated channel, Shal-related subfamily, member 3 protein-coding KCND3 potassium voltage-gated channel, Shal-related subfamily, member 3 O potassium ionic channel Kv4.3|potassium voltage-gated channel subfamily D member 3|sha1-related potassium channel Kv4.3|voltage-gated K+ channel|voltage-gated potassium channel subunit Kv4.3 20121230 -9606 3753 KCNE1 - ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK HGNC:6240|MIM:176261|Ensembl:ENSG00000180509|HPRD:01442|Vega:OTTHUMG00000086236 21 21q22.12 potassium voltage-gated channel, Isk-related family, member 1 protein-coding KCNE1 potassium voltage-gated channel, Isk-related family, member 1 O IKs producing slow voltage-gated potassium channel subunit beta Mink|cardiac delayed rectifier potassium channel protein|delayed rectifier potassium channel subunit IsK|minimal potassium channel|potassium voltage-gated channel subfamily E member 1|potassium voltage-gated channel, Isk-related subfamily, member 1|voltage gated potassiun channel accessory subunit 20121230 -9606 3754 KCNF1 - IK8|KCNF|KV5.1|kH1 HGNC:6246|MIM:603787|Ensembl:ENSG00000162975|HPRD:04808|Vega:OTTHUMG00000119054 2 2p25 potassium voltage-gated channel, subfamily F, member 1 protein-coding KCNF1 potassium voltage-gated channel, subfamily F, member 1 O potassium channel KH1|potassium channel Kv5.1|potassium voltage-gated channel subfamily F member 1|voltage-gated potassium channel subunit Kv5.1 20121230 -9606 3755 KCNG1 RP5-955M13.1 K13|KCNG|KV6.1|kH2 HGNC:6248|MIM:603788|Ensembl:ENSG00000026559|HPRD:04809|Vega:OTTHUMG00000032745 20 20q13 potassium voltage-gated channel, subfamily G, member 1 protein-coding KCNG1 potassium voltage-gated channel, subfamily G, member 1 O potassium channel KH2|potassium channel Kv6.1|potassium voltage-gated channel subfamily G member 1|voltage-gated potassium channel subunit Kv6.1 20121230 -9606 3756 KCNH1 - EAG|EAG1|Kv10.1|h-eag HGNC:6250|MIM:603305|Ensembl:ENSG00000143473|HPRD:04492|Vega:OTTHUMG00000036309 1 1q32.2 potassium voltage-gated channel, subfamily H (eag-related), member 1 protein-coding KCNH1 potassium voltage-gated channel, subfamily H (eag-related), member 1 O EAG channel 1|ether-a-go-go potassium channel 1|ether-a-go-go, Drosophila, homolog of|hEAG1|potassium voltage-gated channel subfamily H member 1|voltage-gated potassium channel subunit Kv10.1 20121230 -9606 3757 KCNH2 - ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1 HGNC:6251|MIM:152427|Ensembl:ENSG00000055118|HPRD:01069|Vega:OTTHUMG00000158341 7 7q36.1 potassium voltage-gated channel, subfamily H (eag-related), member 2 protein-coding KCNH2 potassium voltage-gated channel, subfamily H (eag-related), member 2 O ERG-1|H-ERG|eag homolog|eag-related protein 1|ether-a-go-go-related gene potassium channel 1|ether-a-go-go-related potassium channel protein|ether-a-go-go-related protein 1|hERG-1|potassium voltage-gated channel subfamily H member 2|voltage-gated potassium channel subunit Kv11.1 20121230 -9606 3758 KCNJ1 - KIR1.1|ROMK|ROMK1 HGNC:6255|MIM:600359|Ensembl:ENSG00000151704|HPRD:08981|Vega:OTTHUMG00000048247 11 11q24 potassium inwardly-rectifying channel, subfamily J, member 1 protein-coding KCNJ1 potassium inwardly-rectifying channel, subfamily J, member 1 O ATP-regulated potassium channel ROM-K|ATP-sensitive inward rectifier potassium channel 1|inward rectifier K(+) channel Kir1.1|inwardly rectifying K+ channel|potassium channel, inwardly rectifying subfamily J member 1 20121230 -9606 3759 KCNJ2 - ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 HGNC:6263|MIM:600681|Ensembl:ENSG00000123700|HPRD:02815|Vega:OTTHUMG00000180351 17 17q24.3 potassium inwardly-rectifying channel, subfamily J, member 2 protein-coding KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2 O IRK-1|cardiac inward rectifier potassium channel|hIRK1|inward rectifier K+ channel KIR2.1|inward rectifier potassium channel 2 20121230 -9606 3760 KCNJ3 - GIRK1|KGA|KIR3.1 HGNC:6264|MIM:601534|Ensembl:ENSG00000162989|HPRD:03323|Vega:OTTHUMG00000131937 2 2q24.1 potassium inwardly-rectifying channel, subfamily J, member 3 protein-coding KCNJ3 potassium inwardly-rectifying channel, subfamily J, member 3 O G protein-activated inward rectifier potassium channel 1|GIRK-1|inward rectifier K(+) channel Kir3.1|inward rectifier K+ channel KIR3.1|potassium channel, inwardly rectifying subfamily J member 3|potassium inwardly-rectifying channel subfamily J member 3 splice variant 1e 20121230 -9606 3761 KCNJ4 RP3-434P1.2 HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3 HGNC:6265|MIM:600504|Ensembl:ENSG00000168135|HPRD:02738|Vega:OTTHUMG00000151131 22 22q13.1 potassium inwardly-rectifying channel, subfamily J, member 4 protein-coding KCNJ4 potassium inwardly-rectifying channel, subfamily J, member 4 O hippocampal inward rectifier potassium channel|inward rectifier K(+) channel Kir2.3|inward rectifier K+ channel Kir2.3|inward rectifier potassium channel 4|potassium channel, inwardly rectifying subfamily J member 4 20121230 -9606 3762 KCNJ5 - CIR|GIRK4|KATP1|KIR3.4|LQT13 HGNC:6266|MIM:600734|Ensembl:ENSG00000120457|HPRD:09010|Vega:OTTHUMG00000165795 11 11q24 potassium inwardly-rectifying channel, subfamily J, member 5 protein-coding KCNJ5 potassium inwardly-rectifying channel, subfamily J, member 5 O G protein-activated inward rectifier potassium channel 4|IRK-4|cardiac ATP-sensitive potassium channel|heart KATP channel|inward rectifier K+ channel KIR3.4 20121230 -9606 3763 KCNJ6 - BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|hiGIRK2 HGNC:6267|MIM:600877|Ensembl:ENSG00000157542|HPRD:02929|Vega:OTTHUMG00000086667 21 21q22.1 potassium inwardly-rectifying channel, subfamily J, member 6 protein-coding KCNJ6 potassium inwardly-rectifying channel, subfamily J, member 6 O G protein-activated inward rectifier potassium channel 2|inward rectifier K(+) channel Kir3.2|inward rectifier potassium channel KIR3.2 20121230 -9606 3764 KCNJ8 - KIR6.1|uKATP-1 HGNC:6269|MIM:600935|Ensembl:ENSG00000121361|HPRD:02962|Vega:OTTHUMG00000169093 12 12p11.23 potassium inwardly-rectifying channel, subfamily J, member 8 protein-coding KCNJ8 potassium inwardly-rectifying channel, subfamily J, member 8 O ATP-sensitive inward rectifier potassium channel 8|inward rectifier K(+) channel Kir6.1|inwardly rectifying potassium channel KIR6.1|potassium channel, inwardly rectifying subfamily J member 8 20121230 -9606 3765 KCNJ9 RP11-536C5.1 GIRK3|KIR3.3 HGNC:6270|MIM:600932|Ensembl:ENSG00000162728|HPRD:02959|Vega:OTTHUMG00000024072 1 1q23.2 potassium inwardly-rectifying channel, subfamily J, member 9 protein-coding KCNJ9 potassium inwardly-rectifying channel, subfamily J, member 9 O G protein-activated inward rectifier potassium channel 3|G protein-coupled inward rectifier potassium channel|GIRK-3|inward rectifier K(+) channel Kir3.3|inwardly rectifier K+ channel KIR3.3|potassium channel, inwardly rectifying subfamily J member 9 20121230 -9606 3766 KCNJ10 - BIRK-10|KCNJ13-PEN|KIR1.2|KIR4.1|SESAME HGNC:6256|MIM:602208|Ensembl:ENSG00000177807|HPRD:03732|Vega:OTTHUMG00000024073 1 1q23.2 potassium inwardly-rectifying channel, subfamily J, member 10 protein-coding KCNJ10 potassium inwardly-rectifying channel, subfamily J, member 10 O ATP-dependent inwardly rectifying potassium channel Kir4.1|ATP-sensitive inward rectifier potassium channel 10|glial ATP-dependent inwardly rectifying potassium channel KIR4.1|inward rectifier K(+) channel Kir1.2|inward rectifier K+ channel KIR1.2|potassium channel, inwardly rectifying subfamily J member 10 20121230 -9606 3767 KCNJ11 - BIR|HHF2|IKATP|KIR6.2|PHHI|TNDM3 HGNC:6257|MIM:600937|Ensembl:ENSG00000187486|HPRD:09022|Vega:OTTHUMG00000165914 11 11p15.1 potassium inwardly-rectifying channel, subfamily J, member 11 protein-coding KCNJ11 potassium inwardly-rectifying channel, subfamily J, member 11 O ATP-sensitive inward rectifier potassium channel 11|beta-cell inward rectifier subunit|inward rectifier K(+) channel Kir6.2|inwardly rectifying potassium channel KIR6.2|potassium channel inwardly rectifing subfamily J member 11|potassium channel, inwardly rectifying subfamily J member 11 20121230 -9606 3768 KCNJ12 - IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x HGNC:6258|MIM:602323|Ensembl:ENSG00000184185|HPRD:09083|Vega:OTTHUMG00000132039 17 17p11.2 potassium inwardly-rectifying channel, subfamily J, member 12 protein-coding KCNJ12 potassium inwardly-rectifying channel, subfamily J, member 12 O ATP-sensitive inward rectifier potassium channel 12|inward rectifier K(+) channel Kir2.2|inward rectifier K(+) channel Kir2.2v|inward rectifier K(+) channel Kir2.6|potassium channel, inwardly rectifying subfamily J member 12|potassium inwardly-rectifying channel, subfamily J, inhibitor 1 20121230 -9606 3769 KCNJ13 - KIR1.4|KIR7.1|LCA16|SVD HGNC:6259|MIM:603208|Ensembl:ENSG00000115474|HPRD:04441|Vega:OTTHUMG00000153292 2 2q37 potassium inwardly-rectifying channel, subfamily J, member 13 protein-coding KCNJ13 potassium inwardly-rectifying channel, subfamily J, member 13 O inward rectifier K(+) channel Kir7.1|inward rectifier potassium channel 13 20121230 -9606 3770 KCNJ14 - IRK4|KIR2.4 HGNC:6260|MIM:603953|Ensembl:ENSG00000182324|HPRD:04901 19 19q13 potassium inwardly-rectifying channel, subfamily J, member 14 protein-coding KCNJ14 potassium inwardly-rectifying channel, subfamily J, member 14 O ATP-sensitive inward rectifier potassium channel 14|IRK-4|inward rectifier K(+) channel Kir2.4|inwardly rectifying potassium channel KIR2.4|potassium channel, inwardly rectifying subfamily J member 14 20121230 -9606 3772 KCNJ15 - IRKK|KIR1.3|KIR4.2 HGNC:6261|MIM:602106|Ensembl:ENSG00000157551|HPRD:03659|Vega:OTTHUMG00000090609 21 21q22.2 potassium inwardly-rectifying channel, subfamily J, member 15 protein-coding KCNJ15 potassium inwardly-rectifying channel, subfamily J, member 15 O ATP-sensitive inward rectifier potassium channel 15|inward rectifier K(+) channel Kir1.3|inward rectifier K(+) channel Kir4.2|inward rectifier K+ channel KIR4.2|potassium channel, inwardly rectifying subfamily J member 15 20121230 -9606 3773 KCNJ16 - BIR9|KIR5.1 HGNC:6262|MIM:605722|Ensembl:ENSG00000153822|HPRD:16146 17 17q24.3 potassium inwardly-rectifying channel, subfamily J, member 16 protein-coding KCNJ16 potassium inwardly-rectifying channel, subfamily J, member 16 O inward rectifier K(+) channel Kir5.1|inward rectifier K+ channel KIR5.1|inward rectifier potassium channel 16|potassium channel, inwardly rectifying subfamily J member 16 20121230 -9606 3775 KCNK1 RP4-550F15.1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 HGNC:6272|MIM:601745|Ensembl:ENSG00000135750|HPRD:03447|Vega:OTTHUMG00000037923 1 1q42-q43 potassium channel, subfamily K, member 1 protein-coding KCNK1 potassium channel, subfamily K, member 1 O inward rectifying potassium channel protein TWIK-1|potassium channel KCNO1|potassium channel subfamily K member 1|potassium inwardly-rectifying channel, subfamily K, member 1 20121230 -9606 3776 KCNK2 - K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e HGNC:6277|MIM:603219|Ensembl:ENSG00000082482|Vega:OTTHUMG00000037017 1 1q41 potassium channel, subfamily K, member 2 protein-coding KCNK2 potassium channel, subfamily K, member 2 O K2P2.1 potassium channel|TREK-1 K(+) channel subunit|TWIK-related potassium channel 1|outward rectifying potassium channel protein TREK-1|potassium channel subfamily K member 2|potassium inwardly-rectifying channel, subfamily K, member 2|tandem-pore-domain potassium channel TREK-1|two pore domain potassium channel TREK-1|two pore potassium channel TPKC1|two-pore potassium channel 1 20121230 -9606 3777 KCNK3 - K2p3.1|OAT1|TASK|TASK-1|TBAK1 HGNC:6278|MIM:603220|Ensembl:ENSG00000171303|HPRD:04451|Vega:OTTHUMG00000125530 2 2p23 potassium channel, subfamily K, member 3 protein-coding KCNK3 potassium channel, subfamily K, member 3 O TWIK-related acid-sensitive K(+) channel 1|TWIK-related acid-sensitive K+ channel|acid-sensitive potassium channel protein TASK|acid-sensitive potassium channel protein TASK-1|cardiac potassium channel|potassium channel subfamily K member 3|potassium inwardly-rectifying channel, subfamily K, member 3|two P domain potassium channel|two pore K(+) channel KT3.1|two pore potassium channel KT3.1 20121230 -9606 3778 KCNMA1 RP11-443A13.1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 HGNC:6284|MIM:600150|Ensembl:ENSG00000156113|HPRD:15967|Vega:OTTHUMG00000018543 10 10q22.3 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding KCNMA1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 O BK channel alpha subunit|BKCA alpha subunit|calcium-activated potassium channel subunit alpha-1|calcium-activated potassium channel, subfamily M subunit alpha-1|hSlo|k(VCA)alpha|maxi-K channel HSLO|slo homolog|slowpoke homolog|stretch-activated Kca channel 20121230 -9606 3779 KCNMB1 - K(VCA)beta|SLO-BETA|hslo-beta HGNC:6285|MIM:603951|Ensembl:ENSG00000145936|HPRD:10358|Vega:OTTHUMG00000130439 5 5q34 potassium large conductance calcium-activated channel, subfamily M, beta member 1 protein-coding KCNMB1 potassium large conductance calcium-activated channel, subfamily M, beta member 1 O BK channel beta subunit|BK channel subunit beta-1|BKbeta|BKbeta1|Maxi K channel beta subunit|calcium-activated potassium channel subunit beta|calcium-activated potassium channel subunit beta-1|calcium-activated potassium channel, subfamily M subunit beta-1|charybdotoxin receptor subunit beta-1|hbeta1|k(VCA)beta-1|large conductance Ca2+-activated K+ channel beta 1 subunit|maxi K channel subunit beta-1|slo-beta-1 20121230 -9606 3780 KCNN1 - KCa2.1|SK1|SKCA1|hSK1 HGNC:6290|MIM:602982|Ensembl:ENSG00000105642|HPRD:04282 19 19p13.1 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 protein-coding KCNN1 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 O SKCa 1|small conductance calcium-activated potassium channel protein 1 20121230 -9606 3781 KCNN2 - KCa2.2|SK2|SKCA2|hSK2 HGNC:6291|MIM:605879|Ensembl:ENSG00000080709|HPRD:09323|Vega:OTTHUMG00000128836 5 5q22.3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding KCNN2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 O SKCa 2|apamin-sensitive small-conductance Ca2+-activated potassium channel|small conductance calcium-activated potassium channel protein 2 20121230 -9606 3782 KCNN3 RP11-274N19.1 KCa2.3|SK3|SKCA3|hSK3 HGNC:6292|MIM:602983|Ensembl:ENSG00000143603|HPRD:04283|Vega:OTTHUMG00000037260 1 1q21.3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 protein-coding KCNN3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 O SKCa 3|small conductance calcium-activated potassium channel protein 3 20121230 -9606 3783 KCNN4 - IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4 HGNC:6293|MIM:602754|Ensembl:ENSG00000104783|HPRD:04130 19 19q13.2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 protein-coding KCNN4 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 O SKCa 4|SKCa4|intermediate conductance calcium-activated potassium channel protein 4|putative Gardos channel|putative erythrocyte intermediate conductance calcium-activated potassium Gardos channel 20121230 -9606 3784 KCNQ1 - ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS HGNC:6294|MIM:607542|Ensembl:ENSG00000053918|HPRD:06341|Vega:OTTHUMG00000009900 11 11p15.5 potassium voltage-gated channel, KQT-like subfamily, member 1 protein-coding KCNQ1 potassium voltage-gated channel, KQT-like subfamily, member 1 O IKs producing slow voltage-gated potassium channel subunit alpha KvLQT1|kidney and cardiac voltage dependend K+ channel|potassium voltage-gated channel subfamily KQT member 1|slow delayed rectifier channel subunit|voltage-gated potassium channel subunit Kv7.1 20121230 -9606 3785 KCNQ2 RP11-261N11.2 BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1 HGNC:6296|MIM:602235|Ensembl:ENSG00000075043|HPRD:03757|Vega:OTTHUMG00000033049 20 20q13.3 potassium voltage-gated channel, KQT-like subfamily, member 2 protein-coding KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2 O KQT-like 2|neuroblastoma-specific potassium channel protein|neuroblastoma-specific potassium channel subunit alpha KvLQT2|potassium voltage-gated channel subfamily KQT member 2|voltage-gated potassium channel subunit Kv7.2 20121230 -9606 3786 KCNQ3 - BFNC2|EBN2|KV7.3 HGNC:6297|MIM:602232|Ensembl:ENSG00000184156|HPRD:09077|Vega:OTTHUMG00000137472 8 8q24 potassium voltage-gated channel, KQT-like subfamily, member 3 protein-coding KCNQ3 potassium voltage-gated channel, KQT-like subfamily, member 3 O potassium channel subunit alpha KvLQT3|potassium channel, voltage-gated, subfamily Q, member 3|potassium voltage-gated channel subfamily KQT member 3|voltage-gated potassium channel subunit Kv7.3 20121230 -9606 3787 KCNS1 - KV9.1 HGNC:6300|MIM:602905|Ensembl:ENSG00000124134|HPRD:04214|Vega:OTTHUMG00000033079 20 20q12 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 protein-coding KCNS1 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 O delayed-rectifier K(+) channel alpha subunit 1|delayed-rectifier K+ channel alpha subunit 1|potassium voltage-gated channel subfamily S member 1|voltage-gated potassium channel protein Kv9.1|voltage-gated potassium channel subunit Kv9.1 20121230 -9606 3788 KCNS2 - KV9.2 HGNC:6301|MIM:602906|Ensembl:ENSG00000156486|HPRD:04215|Vega:OTTHUMG00000044337 8 8q22 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2 protein-coding KCNS2 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2 O delayed-rectifier K(+) channel alpha subunit 2|potassium voltage-gated channel subfamily S member 2|voltage-gated potassium channel subunit Kv9.2 20121230 -9606 3790 KCNS3 - KV9.3 HGNC:6302|MIM:603888|Ensembl:ENSG00000170745|HPRD:04865|Vega:OTTHUMG00000044150 2 2p24 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 protein-coding KCNS3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 O Shab-related delayed-rectifier K+ channel alpha subunit 3|delayed-rectifier K(+) channel alpha subunit 3|potassium voltage-gated channel delayed-rectifier protein S3|potassium voltage-gated channel subfamily S member 3|voltage-gated potassium channel protein Kv9.3|voltage-gated potassium channel subunit Kv9.3 20121230 -9606 3791 KDR - CD309|FLK1|VEGFR|VEGFR2 HGNC:6307|MIM:191306|Ensembl:ENSG00000128052|HPRD:01867|Vega:OTTHUMG00000128734 4 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) protein-coding KDR kinase insert domain receptor (a type III receptor tyrosine kinase) O fetal liver kinase 1|fetal liver kinase-1|protein-tyrosine kinase receptor Flk-1|soluble VEGFR2|tyrosine kinase growth factor receptor|vascular endothelial growth factor receptor 2 20121230 -9606 3792 KEL - CD238|ECE3 HGNC:6308|MIM:613883|Ensembl:ENSG00000197993|HPRD:00194|Vega:OTTHUMG00000157159 7 7q33 Kell blood group, metallo-endopeptidase protein-coding KEL Kell blood group, metallo-endopeptidase O kell blood group antigen|kell blood group glycoprotein 20121230 -9606 3795 KHK - - HGNC:6315|MIM:614058|Ensembl:ENSG00000138030|HPRD:11774|Vega:OTTHUMG00000097077 2 2p23.3 ketohexokinase (fructokinase) protein-coding KHK ketohexokinase (fructokinase) O hepatic fructokinase|ketohexokinase 20121230 -9606 3796 KIF2A - HK2|KIF2 HGNC:6318|MIM:602591|Ensembl:ENSG00000068796|HPRD:03996|Vega:OTTHUMG00000097755 5 5q12-q13 kinesin heavy chain member 2A protein-coding KIF2A kinesin heavy chain member 2A O Kinesin, heavy chain, 2|kinesin-2|kinesin-like protein KIF2A 20121230 -9606 3797 KIF3C - - HGNC:6321|MIM:602845|Ensembl:ENSG00000084731|HPRD:04164|Vega:OTTHUMG00000094797 2 2p23 kinesin family member 3C protein-coding KIF3C kinesin family member 3C O KIF3C variant protein|kinesin-like protein KIF3C 20121230 -9606 3798 KIF5A - D12S1889|MY050|NKHC|SPG10 HGNC:6323|MIM:602821|Ensembl:ENSG00000155980|HPRD:09108|Vega:OTTHUMG00000170143 12 12q13.13 kinesin family member 5A protein-coding KIF5A kinesin family member 5A O KIF5A variant protein|kinesin heavy chain isoform 5A|kinesin heavy chain neuron-specific 1|kinesin, heavy chain, neuron-specific|neuronal kinesin heavy chain 20121230 -9606 3799 KIF5B - KINH|KNS|KNS1|UKHC HGNC:6324|MIM:602809|Ensembl:ENSG00000170759|HPRD:07214|Vega:OTTHUMG00000017913 10 10p11.22 kinesin family member 5B protein-coding KIF5B kinesin family member 5B O conventional kinesin heavy chain|kinesin 1 (110-120kD)|kinesin heavy chain|kinesin-1 heavy chain|ubiquitous kinesin heavy chain 20121230 -9606 3800 KIF5C - KINN|NKHC|NKHC-2|NKHC2 HGNC:6325|MIM:604593|Ensembl:ENSG00000168280|Vega:OTTHUMG00000153779 2 2q23.1 kinesin family member 5C protein-coding KIF5C kinesin family member 5C O kinesin heavy chain isoform 5C|kinesin heavy chain neuron-specific 2|kinesin, heavy chain, neuron-specific 20121230 -9606 3801 KIFC3 - - HGNC:6326|MIM:604535|Ensembl:ENSG00000140859|HPRD:05171|Vega:OTTHUMG00000133455 16 16q13-q21 kinesin family member C3 protein-coding KIFC3 kinesin family member C3 O kinesin-like protein KIFC3 20121230 -9606 3802 KIR2DL1 XXbac-BCX195L8.1 CD158A|KIR-K64|KIR221|NKAT|NKAT1|p58.1 HGNC:6329|MIM:604936|Ensembl:ENSG00000125498|HPRD:12000|Vega:OTTHUMG00000065885 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 protein-coding KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 O CD158 antigen-like family member A|MHC class I NK cell receptor|NKAT-1|killer Ig receptor|killer cell immunoglobulin-like receptor 2DL1|killer inhibitory receptor 2-2-1|natural killer-associated transcript 1|p58 NK cell inhibitory receptor NKR-K6|p58 NK receptor CL-42/47.11|p58 killer cell inhibitory receptor KIR-K64|p58 natural killer cell receptor clones CL-42/47.11|p58.1 MHC class-I-specific NK receptor 20121230 -9606 3803 KIR2DL2 CU464060.2 CD158B1|CD158b|NKAT6|p58.2 HGNC:6330|MIM:604937|HPRD:16080 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2 protein-coding KIR2DL2 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2 O CD158 antigen-like family member B1|MHC class I NK cell receptor|NKAT-6|killer cell immunoglobulin-like receptor 2DL2|natural killer-associated transcript 6|p58 NK receptor CL-43|p58 natural killer cell receptor clone CL-43 20121222 -9606 3804 KIR2DL3 CU464054.1 CD158B2|CD158b|GL183|KIR-023GB|KIR-K7b|KIR-K7c|KIRCL23|NKAT|NKAT2|NKAT2A|NKAT2B|p58 HGNC:6331|MIM:604938|Ensembl:ENSG00000243772|HPRD:10383|Vega:OTTHUMG00000065887 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 protein-coding KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 O CD158 antigen-like family member B2|MHC class I NK cell receptor|NK-receptor|NKAT-2|killer cell immunoglobulin-like receptor 2DL3|killer inhibitory receptor cl 2-3|natural killer associated transcript 2|natural killer cell inhibitory receptor KIR2DL3|natural killer-associated transcript 2|p58 NK receptor CL-6|p58 natural killer cell receptor clone CL-6|p58.2 MHC class-I specific NK receptor|p58.2 MHC class-I-specific NK receptor 20121230 -9606 3805 KIR2DL4 XXbac-BCX195L8.3 CD158D|G9P|KIR103|KIR103AS HGNC:6332|MIM:604945|Ensembl:ENSG00000189013|HPRD:16082|Vega:OTTHUMG00000065880 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4 protein-coding KIR2DL4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4 O CD158 antigen-like family member D|KIR-103AS|MHC class I NK cell receptor KIR103AS|NK cell receptor|killer Ig receptor|killer cell immunoglobulin-like receptor 2DL4|killer cell inhibitory receptor 103AS|natural killer cell inhibitory receptor 20121230 -9606 3806 KIR2DS1 XXbac-BCX195L8.7 CD158H|CD158a|p50.1 HGNC:6333|MIM:604952|HPRD:05384 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 1 protein-coding KIR2DS1 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 1 O CD158 antigen-like family member H|KIR2DL1-KIR2DS1|MHC class I NK cell receptor Eb6 ActI|killer cell immunoglobulin-like receptor 2DS1|killer cell immunoglobulin-like receptor KIRDS1|killer-cell immunoglobulin-like receptor 20121209 -9606 3808 KIR2DS3 - NKAT7 HGNC:6335|MIM:604954|HPRD:05386 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 3 protein-coding KIR2DS3 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 3 O MHC class I NK cell receptor|NKAT-7|killer cell immunoglobulin-like receptor 2DS3|natural killer cell inhibitory receptor|natural killer-associated transcript 7 20121222 -9606 3809 KIR2DS4 XXbac-BPG230H20.3 CD158I|KIR1D|KIR412|KKA3|NKAT8 HGNC:6336|MIM:604955|Ensembl:ENSG00000221957|HPRD:05387|Vega:OTTHUMG00000065932 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4 protein-coding KIR2DS4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4 O CD158 antigen-like family member I|KIR antigen 2DS4|MHC class I NK cell receptor|NKAT-8|P58 natural killer cell receptor clones CL-39/CL-17|killer cell immunoglobulin-like receptor 2DS4|killer inhibitory receptor 4-1-2|natural killer cell inhibitory receptor|natural killer-associated transcript 8|p58 NK receptor CL-39/CL-17 20121230 -9606 3810 KIR2DS5 XXbac-BCX195L8.6 CD158G|NKAT9 HGNC:6337|MIM:604956|HPRD:05388 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 5 protein-coding KIR2DS5 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 5 O CD158 antigen-like family member G|MHC class I NK cell receptor|NKAT-9|killer cell immunoglobulin-like receptor 2DS5|natural killer cell inhibitory receptor|natural killer-associated transcript 9 20121222 -9606 3811 KIR3DL1 XXbac-BCX195L8.4 CD158E1|KIR|KIR3DL1/S1|NKAT3|NKB1|NKB1B HGNC:6338|MIM:604946|Ensembl:ENSG00000167633|HPRD:09226|HPRD:10034|Vega:OTTHUMG00000065933 19 19q13.4 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 protein-coding KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 O CD158 antigen-like family member E|HLA-BW4-specific inhibitory NK cell receptor|KIR antigen 3DL1|MHC class I NK cell receptor|NK-receptor|NKAT-3|killer Ig receptor|killer cell immunoglobulin-like receptor 3DL1|natural killer-associated transcript 3|p70 NK receptor CL-2/CL-11|p70 killer cell inhibitory receptor|p70 natural killer cell receptor clones CL-2/CL-11 20121230 -9606 3812 KIR3DL2 CU464063.2 CD158K|NKAT-4|NKAT4|NKAT4B|p140 HGNC:6339|MIM:604947|Ensembl:ENSG00000240403|HPRD:10384|Vega:OTTHUMG00000065935 19 19q13.4 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 protein-coding KIR3DL2 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 O CD158 antigen-like family member K|KIR antigen 3DL2|MHC class I NK cell receptor|killer Ig receptor|killer cell immunoglobulin-like receptor 3DL2|killer cell immunoglobulin-like receptor KIR3DL2|natural killer cell inhibitory receptor|natural killer-associated transcript 4|p70 NK receptor CL-5|p70 killer cell inhibitory receptor|p70 natural killer cell receptor clone CL-5 20121230 -9606 3813 KIR3DS1 - CD158E2|KIR-123FM|KIR-G1|NKAT10 HGNC:6340 19 19q13.4 killer cell immunoglobulin-like receptor, three domains, short cytoplasmic tail, 1 protein-coding KIR3DS1 killer cell immunoglobulin-like receptor, three domains, short cytoplasmic tail, 1 O MHC class I NK cell receptor|NKAT-10|killer Ig receptor|killer cell immunoglobulin-like receptor 3DS1|killer cell immunoglobulin-like receptor KIR3DS1|natural killer-associated transcript 10 20121222 -9606 3814 KISS1 PP5098 HH13|KiSS-1 HGNC:6341|MIM:603286|Ensembl:ENSG00000170498|HPRD:04475|Vega:OTTHUMG00000036060 1 1q32 KiSS-1 metastasis-suppressor protein-coding KISS1 KiSS-1 metastasis-suppressor O kisspeptin-1|malignant melanoma metastasis-suppressor|metastasis-suppressor KiSS-1|metastin 20121230 -9606 3815 KIT - C-Kit|CD117|PBT|SCFR HGNC:6342|MIM:164920|Ensembl:ENSG00000157404|HPRD:01287|Vega:OTTHUMG00000128713 4 4q11-q12 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog protein-coding KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog O mast/stem cell growth factor receptor Kit|p145 c-kit|piebald trait protein|proto-oncogene c-Kit|proto-oncogene tyrosine-protein kinase Kit|soluble KIT variant 1|tyrosine-protein kinase Kit|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene-like protein 20121230 -9606 3816 KLK1 - KLKR|Klk6|hK1 HGNC:6357|MIM:147910|Ensembl:ENSG00000167748|HPRD:01003 19 19q13.3 kallikrein 1 protein-coding KLK1 kallikrein 1 O glandular kallikrein 1|kallikrein 1, renal/pancreas/salivary|kallikrein serine protease 1|kallikrein-1|kidney/pancreas/salivary gland kallikrein|tissue kallikrein 20121230 -9606 3817 KLK2 - KLK2A2|hGK-1|hK2 HGNC:6363|MIM:147960|Ensembl:ENSG00000167751|HPRD:01006 19 19q13.41 kallikrein-related peptidase 2 protein-coding KLK2 kallikrein-related peptidase 2 O glandular kallikrein 2|glandular kallikrein-1|kallikrein 2, prostatic|kallikrein-2|tissue kallikrein-2 20121230 -9606 3818 KLKB1 - KLK3|PPK HGNC:6371|MIM:229000|Ensembl:ENSG00000164344|HPRD:01971|Vega:OTTHUMG00000150347 4 4q35 kallikrein B, plasma (Fletcher factor) 1 protein-coding KLKB1 kallikrein B, plasma (Fletcher factor) 1 O Fletcher factor|kininogenin|plasma kallikrein|plasma kallikrein heavy chain|plasma kallikrein light chain|plasma prekallikrein 20121230 -9606 3820 KLRB1 - CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A HGNC:6373|MIM:602890|Ensembl:ENSG00000111796|HPRD:04201|Vega:OTTHUMG00000168581 12 12p13 killer cell lectin-like receptor subfamily B, member 1 protein-coding KLRB1 killer cell lectin-like receptor subfamily B, member 1 O C-type lectin domain family 5 member B|killer cell lectin-like receptor subfamily B member 1|natural killer cell surface protein P1A 20121230 -9606 3821 KLRC1 - CD159A|NKG2|NKG2A HGNC:6374|MIM:161555|Ensembl:ENSG00000134545|HPRD:01192|Vega:OTTHUMG00000168584 12 12p13 killer cell lectin-like receptor subfamily C, member 1 protein-coding KLRC1 killer cell lectin-like receptor subfamily C, member 1 O C-lectin type II protein|CD159 antigen-like family member A|NK cell receptor A|NKG2-1/B activating NK receptor|NKG2-A/B type II integral membrane protein|NKG2-A/B-activating NK receptor|NKG2-A/NKG2-B type II integral membrane protein|natural killer cell lectin|natural killer group protein 2 20121230 -9606 3822 KLRC2 - CD159c|NKG2-C|NKG2C HGNC:6375|MIM:602891|Ensembl:ENSG00000205809|HPRD:04202|Vega:OTTHUMG00000168532 12 12p13 killer cell lectin-like receptor subfamily C, member 2 protein-coding KLRC2 killer cell lectin-like receptor subfamily C, member 2 O CD159 antigen-like family member C|NK cell receptor C|NKG2-C type II integral membrane protein|NKG2-C-activating NK receptor 20121230 -9606 3823 KLRC3 - NKG2-E|NKG2E HGNC:6376|MIM:602892|Ensembl:ENSG00000205810|HPRD:04203|Vega:OTTHUMG00000167149 12 12p13 killer cell lectin-like receptor subfamily C, member 3 protein-coding KLRC3 killer cell lectin-like receptor subfamily C, member 3 O NK cell receptor E|NKG2-E type II integral membrane protein|NKG2-E-activating NK receptor 20121230 -9606 3824 KLRD1 - CD94 HGNC:6378|MIM:602894|Ensembl:ENSG00000134539|HPRD:04204|Vega:OTTHUMG00000168419 12 12p13 killer cell lectin-like receptor subfamily D, member 1 protein-coding KLRD1 killer cell lectin-like receptor subfamily D, member 1 O CD94 antigen|KP43|NK cell receptor|natural killer cells antigen CD94 20121230 -9606 3827 KNG1 - BDK|KNG HGNC:6383|MIM:612358|Ensembl:ENSG00000113889|HPRD:01970|Vega:OTTHUMG00000150348 3 3q27 kininogen 1 protein-coding KNG1 kininogen 1 O HMWK|alpha-2-thiol proteinase inhibitor|bradykinin|fitzgerald factor|high molecular weight kininogen|kininogen-1|williams-Fitzgerald-Flaujeac factor 20121230 -9606 3829 KNPEP - - HGNC:6385 - - lysyl aminopeptidase (aminopeptidase Co) protein-coding KNPEP lysyl aminopeptidase (aminopeptidase Co) O - 20080828 -9606 3831 KLC1 - KLC|KNS2|KNS2A HGNC:6387|MIM:600025|Ensembl:ENSG00000126214|Ensembl:ENSG00000256500|HPRD:02489|Vega:OTTHUMG00000169226|Vega:OTTHUMG00000169227 14 14q32.3 kinesin light chain 1 protein-coding KLC1 kinesin light chain 1 O KLC 1|kinesin 2 60/70kDa|medulloblastoma antigen MU-MB-2.50 20121230 -9606 3832 KIF11 - EG5|HKSP|KNSL1|MCLMR|TRIP5 HGNC:6388|MIM:148760|Ensembl:ENSG00000138160|HPRD:01023|Vega:OTTHUMG00000018761 10 10q24.1 kinesin family member 11 protein-coding KIF11 kinesin family member 11 O TR-interacting protein 5|TRIP-5|kinesin-like protein 1|kinesin-like protein KIF11|kinesin-like spindle protein HKSP|kinesin-related motor protein Eg5|thyroid receptor-interacting protein 5 20121230 -9606 3833 KIFC1 DAQB-126H3.5 HSET|KNSL2 HGNC:6389|MIM:603763|Ensembl:ENSG00000237649|Vega:OTTHUMG00000031209 6 6p21.3 kinesin family member C1 protein-coding KIFC1 kinesin family member C1 O kinesin-like 2|kinesin-like protein 2|kinesin-like protein KIFC1|kinesin-related protein HSET 20121230 -9606 3834 KIF25 RP11-164L23.3 KNSL3 HGNC:6390|MIM:603815|Ensembl:ENSG00000125337|HPRD:04818|Vega:OTTHUMG00000016035 6 6q27 kinesin family member 25 protein-coding KIF25 kinesin family member 25 O kinesin-like 3|kinesin-like protein 3|kinesin-like protein KIF25 20121230 -9606 3835 KIF22 - A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2 HGNC:6391|MIM:603213|Ensembl:ENSG00000079616|HPRD:04445|Vega:OTTHUMG00000097771 16 16p11.2 kinesin family member 22 protein-coding KIF22 kinesin family member 22 O kinesin-like DNA-binding protein pseudogene|kinesin-like protein 4|kinesin-like protein KIF22|oriP binding protein|origin of plasmid DNA replication-binding protein 20121230 -9606 3836 KPNA1 - IPOA5|NPI-1|RCH2|SRP1 HGNC:6394|MIM:600686|Ensembl:ENSG00000114030|HPRD:02819|Vega:OTTHUMG00000159487 3 3q21 karyopherin alpha 1 (importin alpha 5) protein-coding KPNA1 karyopherin alpha 1 (importin alpha 5) O RAG cohort protein 2|SRP1-beta|importin alpha 5|importin subunit alpha-1|importin-alpha-S1|karyopherin subunit alpha-1|nucleoprotein interactor 1|recombination activating gene cohort 2 20121230 -9606 3837 KPNB1 - IMB1|IPO1|IPOB|Impnb|NTF97 HGNC:6400|MIM:602738|Ensembl:ENSG00000108424|HPRD:04114|Vega:OTTHUMG00000036957 17 17q21.32 karyopherin (importin) beta 1 protein-coding KPNB1 karyopherin (importin) beta 1 O PTAC97|importin 1|importin 90|importin beta-1 subunit|importin subunit beta-1|importin-90|karyopherin subunit beta-1|nuclear factor p97|pore targeting complex 97 kDa subunit 20121230 -9606 3838 KPNA2 - IPOA1|QIP2|RCH1|SRP1alpha HGNC:6395|MIM:600685|Ensembl:ENSG00000182481|HPRD:02818|Vega:OTTHUMG00000179784 17 17q24.2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) protein-coding KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) O RAG cohort 1|RAG cohort protein 1|SRP1-alpha|importin alpha 1|importin alpha 2|importin subunit alpha-2|importin-alpha-P1|karyopherin subunit alpha-2|pendulin 20121230 -9606 3839 KPNA3 RP11-432M24.3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 HGNC:6396|MIM:601892|Ensembl:ENSG00000102753|HPRD:03536|Vega:OTTHUMG00000016922 13 13q14.3 karyopherin alpha 3 (importin alpha 4) protein-coding KPNA3 karyopherin alpha 3 (importin alpha 4) O SRP1-gamma|importin alpha 4|importin alpha Q2|importin alpha-3|importin subunit alpha-3|importin-alpha-Q2|karyopherin subunit alpha-3|qip2 20121230 -9606 3840 KPNA4 - IPOA3|QIP1|SRP3 HGNC:6397|MIM:602970|Ensembl:ENSG00000186432|HPRD:04275|Vega:OTTHUMG00000159033 3 3q25.33 karyopherin alpha 4 (importin alpha 3) protein-coding KPNA4 karyopherin alpha 4 (importin alpha 3) O importin alpha Q1|importin subunit alpha-4|karyopherin subunit alpha-4 20121230 -9606 3841 KPNA5 RP3-412I7.4 IPOA6|SRP6 HGNC:6398|MIM:604545|Ensembl:ENSG00000196911|HPRD:05179|Vega:OTTHUMG00000015448 6 6q22.1 karyopherin alpha 5 (importin alpha 6) protein-coding KPNA5 karyopherin alpha 5 (importin alpha 6) O importin alpha 6|importin subunit alpha-6|karyopherin subunit alpha-5 20121230 -9606 3842 TNPO1 - IPO2|KPNB2|MIP|MIP1|TRN HGNC:6401|MIM:602901|Ensembl:ENSG00000083312|HPRD:04210|Vega:OTTHUMG00000100967 5 5q13.2 transportin 1 protein-coding TNPO1 transportin 1 O M9 region interaction protein|importin 2|importin beta 2|importin beta-2|karyopherin (importin) beta 2|karyopherin beta-2|transportin-1 20121230 -9606 3843 IPO5 RP11-72J7.1 IMB3|KPNB3|Pse1|RANBP5|imp5 HGNC:6402|MIM:602008|Ensembl:ENSG00000065150|HPRD:03597|Vega:OTTHUMG00000017244 13 13q32.2 importin 5 protein-coding IPO5 importin 5 O RAN binding protein 5|Ran_GTP binding protein 5|importin beta-3 subunit|importin subunit beta-3|importin-5|karyopherin (importin) beta 3|karyopherin beta-3|ran-binding protein 5 20121230 -9606 3844 KRASP1 - KRAS1P|c-Kras1 HGNC:6406 6 6p12-p11 v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog pseudogene 1 pseudo KRASP1 v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog pseudogene 1 O - 20121230 -9606 3845 KRAS - C-K-RAS|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RASK2 HGNC:6407|MIM:190070|Ensembl:ENSG00000133703|HPRD:01817|Vega:OTTHUMG00000171193 12 12p12.1 v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog protein-coding KRAS v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog O GTPase KRas|K-Ras 2|K-ras p21 protein|PR310 c-K-ras oncogene|c-Ki-ras|c-Kirsten-ras protein|cellular c-Ki-ras2 proto-oncogene|oncogene KRAS2|transforming protein p21|v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 20121230 -9606 3846 KRTAP5-9 - KRN1|KRTAP5-1|KRTAP5.9 HGNC:23604|MIM:148021|Ensembl:ENSG00000254997|HPRD:01008|Vega:OTTHUMG00000167263 11 11q13.5 keratin associated protein 5-9 protein-coding KRTAP5-9 keratin associated protein 5-9 O UHS KerA|UHS keratin A|keratin, cuticle, ultrahigh sulfur 1|keratin, cuticle, ultrahigh sulphur 1|keratin, ultra high-sulfur matrix protein A|keratin-associated protein 5-9|keratin-associated protein 5.9|ultrahigh sulfur keratin-associated protein 5.9 20121230 -9606 3848 KRT1 - CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK HGNC:6412|MIM:139350|Ensembl:ENSG00000167768|HPRD:00763|Vega:OTTHUMG00000169749 12 12q13.13 keratin 1 protein-coding KRT1 keratin 1 O 67 kDa cytokeratin|CK-1|cytokeratin 1|cytokeratin-1|epidermolytic hyperkeratosis 1|hair alpha protein|keratin, type II cytoskeletal 1|type-II keratin Kb1 20121230 -9606 3849 KRT2 - CK-2e|K2e|KRT2A|KRT2E|KRTE HGNC:6439|MIM:600194|Ensembl:ENSG00000172867|HPRD:02560|Vega:OTTHUMG00000169748 12 12q13.13 keratin 2 protein-coding KRT2 keratin 2 O cytokeratin-2e|epithelial keratin-2e|keratin, type II cytoskeletal 2 epidermal|keratin-2 epidermis|keratin-2e|type-II keratin Kb2 20121230 -9606 3850 KRT3 - CK3|K3 HGNC:6440|MIM:148043|Ensembl:ENSG00000186442|HPRD:01013|Vega:OTTHUMG00000169799 12 12q13.13 keratin 3 protein-coding KRT3 keratin 3 O 65 kDa cytokeratin|CK-3|cytokeratin 3|cytokeratin-3|keratin, type II cytoskeletal 3|type-II keratin Kb3 20121230 -9606 3851 KRT4 - CK-4|CK4|CYK4|K4 HGNC:6441|MIM:123940|Ensembl:ENSG00000170477|HPRD:00478|Vega:OTTHUMG00000169800 12 12q13.13 keratin 4 protein-coding KRT4 keratin 4 O cytokeratin 4|keratin, type II cytoskeletal 4|type-II keratin Kb4 20121230 -9606 3852 KRT5 - CK5|DDD|EBS2|K5|KRT5A HGNC:6442|MIM:148040|Ensembl:ENSG00000186081|HPRD:01010|Vega:OTTHUMG00000169657 12 12q13.13 keratin 5 protein-coding KRT5 keratin 5 O 58 kda cytokeratin|CK-5|cytokeratin-5|epidermolysis bullosa simplex 2 Dowling-Meara/Kobner/Weber-Cockayne types|keratin 5 (epidermolysis bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne types)|keratin, type II cytoskeletal 5|type-II keratin Kb5 20121230 -9606 3853 KRT6A - CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D HGNC:6443|MIM:148041|Ensembl:ENSG00000205420|HPRD:01011|HPRD:17246|Vega:OTTHUMG00000169597 12 12q13.13 keratin 6A protein-coding KRT6A keratin 6A O cytokeratin 6A|cytokeratin 6C|cytokeratin 6D|keratin, epidermal type II, K6A|keratin, type II cytoskeletal 6A|type-II keratin Kb6 20121230 -9606 3854 KRT6B - CK-6B|CK6B|K6B|KRTL1|PC2 HGNC:6444|MIM:148042|Ensembl:ENSG00000185479|HPRD:01012|Vega:OTTHUMG00000169593 12 12q13.13 keratin 6B protein-coding KRT6B keratin 6B O cytokeratin 6B|cytokeratin-6B|keratin, epidermal, type II, K6B|keratin, type II cytoskeletal 6B|keratin-6B|keratin-like 1 (a type II keratin sequence)|type-II keratin Kb10 20121230 -9606 3855 KRT7 - CK7|K2C7|K7|SCL HGNC:6445|MIM:148059|Ensembl:ENSG00000135480|HPRD:01014|Vega:OTTHUMG00000169580 12 12q13.13 keratin 7 protein-coding KRT7 keratin 7 O CK-7|cytokeratin 7|cytokeratin-7|keratin, 55K type II cytoskeletal|keratin, simple epithelial type I, K7|keratin, type II cytoskeletal 7|keratin-7|sarcolectin|type II mesothelial keratin K7|type-II keratin Kb7 20121230 -9606 3856 KRT8 - CARD2|CK-8|CK8|CYK8|K2C8|K8|KO HGNC:6446|MIM:148060|Ensembl:ENSG00000170421|HPRD:01015|Vega:OTTHUMG00000169881 12 12q13 keratin 8 protein-coding KRT8 keratin 8 O cytokeratin 8|cytokeratin-8|keratin, type II cytoskeletal 8|type-II keratin Kb8 20121230 -9606 3857 KRT9 - CK-9|EPPK|K9 HGNC:6447|MIM:607606|Ensembl:ENSG00000171403|HPRD:06351|Vega:OTTHUMG00000133599 17 17q21.1-q21.2 keratin 9 protein-coding KRT9 keratin 9 O cytokeratin 9|cytokeratin-9|keratin, type I cytoskeletal 9|keratin-9|type I cytoskeletal 9 20121230 -9606 3858 KRT10 - BCIE|BIE|CK10|EHK|K10|KPP HGNC:6413|MIM:148080|Ensembl:ENSG00000186395|HPRD:01021|Vega:OTTHUMG00000133368 17 17q21 keratin 10 protein-coding KRT10 keratin 10 O CK-10|cytokeratin 10|keratin, type I cytoskeletal 10|keratin-10 20121230 -9606 3859 KRT12 - K12 HGNC:6414|MIM:601687|Ensembl:ENSG00000187242|HPRD:03405|Vega:OTTHUMG00000133369 17 17q12 keratin 12 protein-coding KRT12 keratin 12 O CK-12|cytokeratin-12|keratin, type I cytoskeletal 12|keratin-12 20121230 -9606 3860 KRT13 - CK13|K13 HGNC:6415|MIM:148065|Ensembl:ENSG00000171401|HPRD:01016|Vega:OTTHUMG00000133434 17 17q12-q21.2 keratin 13 protein-coding KRT13 keratin 13 O CK-13|cytokeratin 13|cytokeratin-13|keratin, type I cytoskeletal 13|keratin-13 20121230 -9606 3861 KRT14 - CK14|EBS3|EBS4|K14|NFJ HGNC:6416|MIM:148066|Ensembl:ENSG00000186847|HPRD:01017|Vega:OTTHUMG00000133426 17 17q12-q21 keratin 14 protein-coding KRT14 keratin 14 O CK-14|cytokeratin 14|cytokeratin-14|keratin 14 (epidermolysis bullosa simplex, Dowling-Meara, Koebner)|keratin, type I cytoskeletal 14|keratin-14 20121230 -9606 3866 KRT15 - CK15|K15|K1CO HGNC:6421|MIM:148030|Ensembl:ENSG00000171346|HPRD:01009|Vega:OTTHUMG00000133435 17 17q21.2 keratin 15 protein-coding KRT15 keratin 15 O CK-15|cytokeratin 15|cytokeratin-15|keratin, type I cytoskeletal 15|keratin-15, basic|keratin-15, beta|type I cytoskeletal 15 20121230 -9606 3868 KRT16 - CK16|FNEPPK|K16|K1CP|KRT16A|NEPPK HGNC:6423|MIM:148067|Ensembl:ENSG00000186832|HPRD:01018|Vega:OTTHUMG00000133495 17 17q21.2 keratin 16 protein-coding KRT16 keratin 16 O CK-16|cytokeratin 16|cytokeratin-16|focal non-epidermolytic palmoplantar keratoderma|keratin, type I cytoskeletal 16|keratin-16 20121230 -9606 3872 KRT17 - K17|PC|PC2|PCHC1 HGNC:6427|MIM:148069|Ensembl:ENSG00000128422|HPRD:01019|Vega:OTTHUMG00000133505 17 17q21.2 keratin 17 protein-coding KRT17 keratin 17 O 39.1|CK-17|cytokeratin-17|keratin 17 epitope S1|keratin 17 epitope S2|keratin 17 epitope S4|keratin, type I cytoskeletal 17|keratin-17 20121230 -9606 3875 KRT18 PIG46 CYK18|K18 HGNC:6430|MIM:148070|Ensembl:ENSG00000111057|HPRD:01020|Vega:OTTHUMG00000169882 12 12q13 keratin 18 protein-coding KRT18 keratin 18 O CK-18|cell proliferation-inducing gene 46 protein|cell proliferation-inducing protein 46|cytokeratin 18|cytokeratin-18|keratin, type I cytoskeletal 18|keratin-18 20121230 -9606 3876 KRT18P11 - KRT18L1 HGNC:6431 X Xq21.31 keratin 18 pseudogene 11 pseudo KRT18P11 keratin 18 pseudogene 11 O - 20121230 -9606 3879 KRT18P1 - dJ25J6.3 HGNC:6434 6 6p21.2 keratin 18 pseudogene 1 pseudo KRT18P1 keratin 18 pseudogene 1 O - 20121230 -9606 3880 KRT19 - CK19|K19|K1CS HGNC:6436|MIM:148020|Ensembl:ENSG00000171345|HPRD:01007|Vega:OTTHUMG00000133422 17 17q21.2 keratin 19 protein-coding KRT19 keratin 19 O 40-kDa keratin intermediate filament|CK-19|cytokeratin 19|cytokeratin-19|keratin, type I cytoskeletal 19|keratin, type I, 40-kd|keratin-19 20121230 -9606 3881 KRT31 - HA1|Ha-1|KRTHA1|hHa1 HGNC:6448|MIM:601077|Ensembl:ENSG00000094796|HPRD:03047|Vega:OTTHUMG00000133423 17 17q12-q21 keratin 31 protein-coding KRT31 keratin 31 O K31|hair keratin, type I Ha1|hard keratin, type I, 1|keratin, hair, acidic,1|keratin, type I cuticular Ha1|keratin-31 20121230 -9606 3882 KRT32 - HA2|HKA2|KRTHA2|hHa2 HGNC:6449|MIM:602760|Ensembl:ENSG00000108759|HPRD:04134|Vega:OTTHUMG00000133430 17 17q21.2 keratin 32 protein-coding KRT32 keratin 32 O K32|hair keratin, type I Ha2|hard keratin, type I, 2|keratin, hair, acidic, 2|keratin, type I cuticular Ha2|keratin-32|type I cuticular hair keratin 20121230 -9606 3883 KRT33A - HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I HGNC:6450|MIM:602761|Ensembl:ENSG00000006059|HPRD:04135|Vega:OTTHUMG00000133432 17 17q12-q21 keratin 33A protein-coding KRT33A keratin 33A O hair keratin, type I Ha3-I|hard keratin, type I,3I|keratin, hair, acidic, 3A|keratin, type I cuticular Ha3-I 20121230 -9606 3884 KRT33B - HA3II|Ha-3II|K33B|KRTHA3A|KRTHA3B|hHa3-II HGNC:6451|MIM:602762|Ensembl:ENSG00000131738|HPRD:04136|Vega:OTTHUMG00000133429 17 17q21.2 keratin 33B protein-coding KRT33B keratin 33B O hair keratin, type I Ha3-II|hard keratin, type I, 3II|keratin, hair, acidic, 3B|keratin, type I cuticular Ha3-II|type I hair keratin 3B 20121230 -9606 3885 KRT34 - HA4|Ha-4|KRTHA4|hHa4 HGNC:6452|MIM:602763|Ensembl:ENSG00000131737|HPRD:04137|Vega:OTTHUMG00000133436 17 17q21.2 keratin 34 protein-coding KRT34 keratin 34 O K34|hair keratin, type I Ha4|hard keratin, type I, 4|keratin, hair, acidic, 4|keratin, type I cuticular Ha4|keratin-34 20121230 -9606 3886 KRT35 - HA5|Ha-5|KRTHA5|hHa5 HGNC:6453|MIM:602764|Ensembl:ENSG00000197079|HPRD:04138|Vega:OTTHUMG00000133425 17 17q21.2 keratin 35 protein-coding KRT35 keratin 35 O HHa5 hair keratin type I intermediate filament|K35|hair keratin, type I Ha5|hard keratin, type I, 5|keratin, hair, acidic, 5|keratin, type I cuticular Ha5|keratin-35 20121230 -9606 3887 KRT81 - HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1 HGNC:6458|MIM:602153|Ensembl:ENSG00000205426|HPRD:03691|Vega:OTTHUMG00000167574 12 12q13 keratin 81 protein-coding KRT81 keratin 81 O K81|MLN 137|ghHb1|hair keratin K2.9|hard keratin, type II, 1|keratin, hair, basic, 1|keratin, type II cuticular Hb1|keratin-81|metastatic lymph node 137 gene protein|type II hair keratin Hb1|type-II keratin Kb21 20121230 -9606 3888 KRT82 - HB2|Hb-2|KRTHB2 HGNC:6459|MIM:601078|Ensembl:ENSG00000161850|HPRD:03048|Vega:OTTHUMG00000169636 12 12q13 keratin 82 protein-coding KRT82 keratin 82 O K82|hard keratin, type II, 2|keratin, hair, basic, 2|keratin, type II cuticular Hb2|keratin-82|type II hair keratin Hb2|type-II keratin Kb22 20121230 -9606 3889 KRT83 - HB3|Hb-3|KRTHB3 HGNC:6460|MIM:602765|Ensembl:ENSG00000170523|HPRD:09097|Vega:OTTHUMG00000169632 12 12q13 keratin 83 protein-coding KRT83 keratin 83 O K83|hHb3|hair keratin K2.10|hard keratin, type II, 3|keratin, hair, basic, 3|keratin, type II cuticular Hb3|keratin-83|type II hair keratin Hb3|type-II keratin Kb23 20121230 -9606 3890 KRT84 - HB4|KRTHB4 HGNC:6461|MIM:602766|Ensembl:ENSG00000161849|HPRD:09098|Vega:OTTHUMG00000169634 12 12q13 keratin 84 protein-coding KRT84 keratin 84 O K84|hard keratin, type II, 4|keratin, hair, basic, 4|keratin, type II cuticular Hb4|keratin-84|type II hair keratin 4|type II hair keratin Hb4|type-II keratin Kb24 20121230 -9606 3891 KRT85 - ECTD4|HB5|Hb-5|KRTHB5|hHb5 HGNC:6462|MIM:602767|Ensembl:ENSG00000135443|HPRD:04139|Vega:OTTHUMG00000169633 12 12q13 keratin 85 protein-coding KRT85 keratin 85 O K85|hair keratin K2.12|hard keratin, type II, 5|keratin, hair, basic, 5|keratin, type II cuticular Hb5|keratin-85|type II hair keratin Hb5|type-II keratin Kb25 20121230 -9606 3892 KRT86 - HB6|Hb1|KRTHB1|KRTHB6|MNX|hHb6 HGNC:6463|MIM:601928|Ensembl:ENSG00000170442|Ensembl:ENSG00000258832|HPRD:03567|Vega:OTTHUMG00000169582 12 12q13 keratin 86 protein-coding KRT86 keratin 86 O K86|hair keratin K2.11|hard keratin, type II, 6|keratin protein HB6|keratin, hair, basic, 6 (monilethrix)|keratin, type II cuticular Hb6|keratin-86|type II hair keratin Hb6|type-II keratin Kb26 20121230 -9606 3895 KTN1 - CG1|KNT|MU-RMS-40.19 HGNC:6467|MIM:600381|Ensembl:ENSG00000126777|HPRD:02661|Vega:OTTHUMG00000140312 14 14q22.1 kinectin 1 (kinesin receptor) protein-coding KTN1 kinectin 1 (kinesin receptor) O CG-1 antigen|kinectin|kinesin receptor 20121230 -9606 3896 KWE - - HGNC:6468|MIM:148370 8 8p23-p22 keratolytic winter erythema (Oudtshoorn skin disease) unknown KWE keratolytic winter erythema (Oudtshoorn skin disease) O - 20120622 -9606 3897 L1CAM - CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1 HGNC:6470|MIM:308840|Ensembl:ENSG00000198910|HPRD:02394|Vega:OTTHUMG00000024221 X Xq28 L1 cell adhesion molecule protein-coding L1CAM L1 cell adhesion molecule O antigen identified by monoclonal antibody R1|neural cell adhesion molecule L1 20121230 -9606 3898 LAD1 - LadA HGNC:6472|MIM:602314|Ensembl:ENSG00000159166|HPRD:03815|Vega:OTTHUMG00000035737 1 1q25.1-q32.3 ladinin 1 protein-coding LAD1 ladinin 1 O lad-1|ladinin-1|linear IgA bullous dermatosis antigen|linear IgA disease antigen homolog 20121230 -9606 3899 AFF3 - LAF4|MLLT2-like HGNC:6473|MIM:601464|Ensembl:ENSG00000144218|HPRD:03272|Vega:OTTHUMG00000153011 2 2q11.2-q12 AF4/FMR2 family, member 3 protein-coding AFF3 AF4/FMR2 family, member 3 O AF4/FMR2 family member 3|MLLT2-related protein|lymphoid nuclear protein 4|lymphoid nuclear protein related to AF4|protein LAF-4 20121230 -9606 3902 LAG3 - CD223 HGNC:6476|MIM:153337|Ensembl:ENSG00000089692|HPRD:01077|Vega:OTTHUMG00000169197 12 12p13.32 lymphocyte-activation gene 3 protein-coding LAG3 lymphocyte-activation gene 3 O lymphocyte activation gene 3 protein 20121230 -9606 3903 LAIR1 XXbac-BCX403H19.4 CD305|LAIR-1 HGNC:6477|MIM:602992|Ensembl:ENSG00000167613|HPRD:04292|Vega:OTTHUMG00000065545 19 19q13.4 leukocyte-associated immunoglobulin-like receptor 1 protein-coding LAIR1 leukocyte-associated immunoglobulin-like receptor 1 O hLAIR1|leukocyte-associated Ig-like receptor 1 20121230 -9606 3904 LAIR2 XXbac-BCX535A19.6 CD306 HGNC:6478|MIM:602993|Ensembl:ENSG00000167618|HPRD:04293|Vega:OTTHUMG00000065697 19 19q13.4 leukocyte-associated immunoglobulin-like receptor 2 protein-coding LAIR2 leukocyte-associated immunoglobulin-like receptor 2 O LAIR-2|leukocyte-associated Ig-like receptor 2|leukocyte-associated Ig-like receptor-2 20121230 -9606 3905 LAKLG - LAKL HGNC:6479|MIM:153435 6 - lymphokine-activated killer cell ligand unknown LAKLG lymphokine-activated killer cell ligand O - 20080828 -9606 3906 LALBA - - HGNC:6480|MIM:149750|Ensembl:ENSG00000167531|HPRD:01024|Vega:OTTHUMG00000170391 12 12q13 lactalbumin, alpha- protein-coding LALBA lactalbumin, alpha- O alpha-lactalbumin|lactose synthase B protein|lysozyme-like protein 7 20121230 -9606 3908 LAMA2 RP1-69D17.2 LAMM HGNC:6482|MIM:156225|Ensembl:ENSG00000196569|HPRD:01125|Vega:OTTHUMG00000015545 6 6q22-q23 laminin, alpha 2 protein-coding LAMA2 laminin, alpha 2 O laminin M chain|laminin subunit alpha-2|laminin-12 subunit alpha|laminin-2 subunit alpha|laminin-4 subunit alpha|merosin heavy chain 20121230 -9606 3909 LAMA3 - BM600|E170|LAMNA|LOCS|lama3a HGNC:6483|MIM:600805|Ensembl:ENSG00000053747|HPRD:02883|Vega:OTTHUMG00000131874 18 18q11.2 laminin, alpha 3 protein-coding LAMA3 laminin, alpha 3 O BM600 150kD subunit|epiligrin 170 kda subunit|epiligrin alpha 3 subunit|epiligrin subunit alpha|kalinin 165kD subunit|kalinin subunit alpha|laminin subunit alpha-3|laminin, alpha 3 (nicein (150kD), kalinin (165kD), BM600 (150kD), epilegrin)|laminin-5 alpha 3 chain|laminin-5 subunit alpha|laminin-6 subunit alpha|laminin-7 subunit alpha|nicein 150kD subunit|nicein subunit alpha 20121230 -9606 3910 LAMA4 RP1-142L7.4 LAMA3|LAMA4*-1 HGNC:6484|MIM:600133|Ensembl:ENSG00000112769|HPRD:02532|Vega:OTTHUMG00000015386 6 6q21 laminin, alpha 4 protein-coding LAMA4 laminin, alpha 4 O laminin alpha 4 chain|laminin subunit alpha-4 20121230 -9606 3911 LAMA5 RP11-157P1.6 - HGNC:6485|MIM:601033|Ensembl:ENSG00000130702|HPRD:03020|Vega:OTTHUMG00000032908 20 20q13.2-q13.3 laminin, alpha 5 protein-coding LAMA5 laminin, alpha 5 O laminin alpha-5 chain|laminin subunit alpha-5|laminin-10 subunit alpha|laminin-11 subunit alpha|laminin-15 subunit alpha 20121230 -9606 3912 LAMB1 - CLM HGNC:6486|MIM:150240|Ensembl:ENSG00000091136|HPRD:01029|Vega:OTTHUMG00000149966 7 7q22 laminin, beta 1 protein-coding LAMB1 laminin, beta 1 O laminin B1 chain|laminin subunit beta-1 20121230 -9606 3913 LAMB2 - LAMS|NPHS5 HGNC:6487|MIM:150325|Ensembl:ENSG00000172037|HPRD:01034|Vega:OTTHUMG00000156807 3 3p21 laminin, beta 2 (laminin S) protein-coding LAMB2 laminin, beta 2 (laminin S) O S-LAM beta|S-laminin subunit beta|laminin B1s chain|laminin S|laminin subunit beta-2 20121230 -9606 3914 LAMB3 RP1-272L16.3 BM600-125KDA|LAM5|LAMNB1 HGNC:6490|MIM:150310|Ensembl:ENSG00000196878|HPRD:01032|Vega:OTTHUMG00000036360 1 1q32 laminin, beta 3 protein-coding LAMB3 laminin, beta 3 O epiligrin subunit bata|kalinin B1 chain|kalinin subunit beta|kalinin-140kDa|laminin B1k chain|laminin S B3 chain|laminin subunit beta-3|laminin, beta 3 (nicein (125kD), kalinin (140kD), BM600 (125kD))|laminin-5 subunit beta|nicein subunit beta|nicein-125kDa 20121230 -9606 3915 LAMC1 RP11-181K3.1 LAMB2 HGNC:6492|MIM:150290|Ensembl:ENSG00000135862|HPRD:01030|Vega:OTTHUMG00000035418 1 1q31 laminin, gamma 1 (formerly LAMB2) protein-coding LAMC1 laminin, gamma 1 (formerly LAMB2) O S-LAM gamma|S-laminin subunit gamma|laminin B2 chain|laminin subunit gamma-1|laminin-10 subunit gamma|laminin-11 subunit gamma|laminin-2 subunit gamma|laminin-3 subunit gamma|laminin-4 subunit gamma|laminin-6 subunit gamma|laminin-7 subunit gamma|laminin-8 subunit gamma|laminin-9 subunit gamma 20121230 -9606 3916 LAMP1 - CD107a|LAMPA|LGP120 HGNC:6499|MIM:153330|Ensembl:ENSG00000185896|HPRD:01076|Vega:OTTHUMG00000017380 13 13q34 lysosomal-associated membrane protein 1 protein-coding LAMP1 lysosomal-associated membrane protein 1 O CD107 antigen-like family member A|LAMP-1|lysosome-associated membrane glycoprotein 1|lysosome-associated membrane protein 1 20121230 -9606 3918 LAMC2 - B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 HGNC:6493|MIM:150292|Ensembl:ENSG00000058085|HPRD:01031|Vega:OTTHUMG00000035520 1 1q25-q31 laminin, gamma 2 protein-coding LAMC2 laminin, gamma 2 O BM600-100kDa|CSF 140 kDa subunit|cell-scattering factor 140 kDa subunit|epiligrin subunit gamma|kalinin subunit gamma|ladsin 140 kDa subunit|laminin B2t chain|laminin subunit gamma-2|large adhesive scatter factor 140 kDa subunit|nicein subunit gamma 20121230 -9606 3920 LAMP2 - CD107b|LAMP-2|LAMPB|LGP110 HGNC:6501|MIM:309060|Ensembl:ENSG00000005893|HPRD:02396|Vega:OTTHUMG00000022301 X Xq24 lysosomal-associated membrane protein 2 protein-coding LAMP2 lysosomal-associated membrane protein 2 O CD107 antigen-like family member B|lysosome-associated membrane glycoprotein 2|lysosome-associated membrane protein 2 20121230 -9606 3921 RPSA - 37LRP|67LR|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 HGNC:6502|MIM:150370|Ensembl:ENSG00000168028|HPRD:01038|Vega:OTTHUMG00000131296 3 3p22.2 ribosomal protein SA protein-coding RPSA ribosomal protein SA O 37 kDa laminin receptor|37/67 kDa laminin receptor|40S ribosomal protein SA|67 kDa laminin receptor|67kD, ribosomal protein SA|colon carcinoma laminin-binding protein|laminin binding protein|laminin receptor 1 (67kD, ribosomal protein SA)|laminin-binding protein precursor p40|multidrug resistance-associated protein MGr1-Ag 20121230 -9606 3923 RPSAP13 - LAMR1P13|LAMRL3|LAMRP3|RPSA_20_1366 HGNC:6505 14 14q22.3 ribosomal protein SA pseudogene 13 pseudo RPSAP13 ribosomal protein SA pseudogene 13 O - 20121230 -9606 3924 RPSAP14 - LAMR1P14|LAMRL4|LAMRP4 HGNC:6506 X Xq13.2 ribosomal protein SA pseudogene 14 pseudo RPSAP14 ribosomal protein SA pseudogene 14 O - 20121230 -9606 3925 STMN1 RP1-125I3.5 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN HGNC:6510|MIM:151442|Ensembl:ENSG00000117632|HPRD:01047|Vega:OTTHUMG00000007389 1 1p36.11 stathmin 1 protein-coding STMN1 stathmin 1 O leukemia-associated phosphoprotein p18|metablastin|oncoprotein 18|phosphoprotein 19|phosphoprotein p19|prosolin|stathmin|stathmin 1/oncoprotein 18|transmembrane protein C1orf215 20121230 -9606 3927 LASP1 - Lasp-1|MLN50 HGNC:6513|MIM:602920|Ensembl:ENSG00000002834|HPRD:04229|Vega:OTTHUMG00000133182 17 17q11-q21.3 LIM and SH3 protein 1 protein-coding LASP1 LIM and SH3 protein 1 O LIM and SH3 domain protein 1|metastatic lymph node gene 50 protein 20121230 -9606 3929 LBP - BPIFD2 HGNC:6517|MIM:151990|Ensembl:ENSG00000129988|HPRD:07175|Vega:OTTHUMG00000032447 20 20q11.23 lipopolysaccharide binding protein protein-coding LBP lipopolysaccharide binding protein O BPI fold containing family D, member 2|LPS-binding protein|lipopolysaccharide-binding protein 20121230 -9606 3930 LBR PRO0650 DHCR14B|LMN2R|PHA HGNC:6518|MIM:600024|Ensembl:ENSG00000143815|HPRD:02488|Vega:OTTHUMG00000037520 1 1q42.1 lamin B receptor protein-coding LBR lamin B receptor O integral nuclear envelope inner membrane protein|lamin-B receptor 20121230 -9606 3931 LCAT - - HGNC:6522|MIM:606967|Ensembl:ENSG00000213398|HPRD:06098|Vega:OTTHUMG00000137551 16 16q22.1 lecithin-cholesterol acyltransferase protein-coding LCAT lecithin-cholesterol acyltransferase O phosphatidylcholine-sterol acyltransferase|phospholipid-cholesterol acyltransferase 20121230 -9606 3932 LCK RP4-675E8.4 LSK|YT16|p56lck|pp58lck HGNC:6524|MIM:153390|Ensembl:ENSG00000182866|HPRD:01080|Vega:OTTHUMG00000007463 1 1p34.3 lymphocyte-specific protein tyrosine kinase protein-coding LCK lymphocyte-specific protein tyrosine kinase O T-lymphocyte specific protein tyrosine kinase p56lck|leukocyte C-terminal Src kinase|lymphocyte cell-specific protein-tyrosine kinase|p56(LSTRA) protein-tyrosine kinase|proto-oncogene tyrosine-protein kinase LCK|t cell-specific protein-tyrosine kinase|tyrosine-protein kinase Lck 20121230 -9606 3933 LCN1 - PMFA|TLC|TP|VEGP HGNC:6525|MIM:151675|Ensembl:ENSG00000160349|HPRD:01059|Vega:OTTHUMG00000020908 9 9q34 lipocalin 1 protein-coding LCN1 lipocalin 1 O VEG protein|Von Ebner gland protein|lipocalin 1 (tear prealbumin)|lipocalin-1|protein migrating faster than albumin|tear prealbumin 20121230 -9606 3934 LCN2 RP11-395P17.6 24p3|MSFI|NGAL HGNC:6526|MIM:600181|Ensembl:ENSG00000148346|HPRD:02551|Vega:OTTHUMG00000020734 9 9q34 lipocalin 2 protein-coding LCN2 lipocalin 2 O 25 kDa alpha-2-microglobulin-related subunit of MMP-9|lipocalin-2|migration-stimulating factor inhibitor|neutrophil gelatinase-associated lipocalin|oncogene 24p3|p25|siderocalin LCN2 20121230 -9606 3935 LCO - - HGNC:6527|MIM:165320 2 2q14-q21 liver cancer oncogene protein-coding LCO liver cancer oncogene O - 20080828 -9606 3936 LCP1 RP11-139H14.1 CP64|L-PLASTIN|LC64P|LPL|PLS2 HGNC:6528|MIM:153430|Ensembl:ENSG00000136167|HPRD:01082|Vega:OTTHUMG00000016864 13 13q14.3 lymphocyte cytosolic protein 1 (L-plastin) protein-coding LCP1 lymphocyte cytosolic protein 1 (L-plastin) O L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (LC64P)|LCP-1|Lymphocyte cytosolic protein-1 (plasmin)|bA139H14.1 (lymphocyte cytosolic protein 1 (L-plastin))|plastin 2|plastin-2 20121230 -9606 3937 LCP2 - SLP-76|SLP76 HGNC:6529|MIM:601603|Ensembl:ENSG00000043462|HPRD:03362|Vega:OTTHUMG00000163121 5 5q35.1 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) protein-coding LCP2 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) O 76 kDa tyrosine phosphoprotein|SH2 domain-containing leukocyte protein of 76 kDa|SH2 domain-containing leukocyte protein of 76kD|SLP-76 tyrosine phosphoprotein|lymphocyte cytosolic protein 2 20121230 -9606 3938 LCT - LAC|LPH|LPH1 HGNC:6530|MIM:603202|Ensembl:ENSG00000115850|HPRD:04437|Vega:OTTHUMG00000131738 2 2q21 lactase protein-coding LCT lactase O lactase-glycosylceramidase|lactase-phlorizin hydrolase|lactase-phlorizin hydrolase-1 20121230 -9606 3939 LDHA PIG19 GSD11|LDH1|LDHM HGNC:6535|MIM:150000|Ensembl:ENSG00000134333|HPRD:01025|Vega:OTTHUMG00000167721 11 11p15.4 lactate dehydrogenase A protein-coding LDHA lactate dehydrogenase A O L-lactate dehydrogenase A chain|LDH muscle subunit|LDH-A|LDH-M|cell proliferation-inducing gene 19 protein|lactate dehydrogenase M|proliferation-inducing gene 19|renal carcinoma antigen NY-REN-59 20121230 -9606 3940 LDHAP1 - LDHAL1 HGNC:6536 4 4p16.2 lactate dehydrogenase A pseudogene 1 pseudo LDHAP1 lactate dehydrogenase A pseudogene 1 O - 20121230 -9606 3945 LDHB - LDH-B|LDH-H|LDHBD|TRG-5 HGNC:6541|MIM:150100|Ensembl:ENSG00000111716|HPRD:01026|Vega:OTTHUMG00000133760 12 12p12.2-p12.1 lactate dehydrogenase B protein-coding LDHB lactate dehydrogenase B O L-lactate dehydrogenase B chain|LDH heart subunit|lactate dehydrogenase H chain|renal carcinoma antigen NY-REN-46 20121230 -9606 3947 LDHBP2 - LDHBL2|LDHBP HGNC:6543 X Xq13.3 lactate dehydrogenase B pseudogene 2 pseudo LDHBP2 lactate dehydrogenase B pseudogene 2 O - 20121230 -9606 3948 LDHC - CT32|LDH3|LDHX HGNC:6544|MIM:150150|Ensembl:ENSG00000166796|HPRD:01027|Vega:OTTHUMG00000167722 11 11p15.1 lactate dehydrogenase C protein-coding LDHC lactate dehydrogenase C O L-lactate dehydrogenase C chain|LDH testis subunit|LDH-C|LDH-X|cancer/testis antigen 32|lactate dehydrogenase C4|lactate dehydrogenase c variant 1|lactate dehydrogenase c variant 3|lactate dehydrogenase c variant 4 20121230 -9606 3949 LDLR - FH|FHC|LDLCQ2 HGNC:6547|MIM:606945|Ensembl:ENSG00000130164|HPRD:06091|Vega:OTTHUMG00000171935 19 19p13.2 low density lipoprotein receptor protein-coding LDLR low density lipoprotein receptor O LDL receptor|low-density lipoprotein receptor|low-density lipoprotein receptor class A domain-containing protein 3 20121230 -9606 3950 LECT2 - chm-II|chm2 HGNC:6550|MIM:602882|Ensembl:ENSG00000145826|HPRD:04196|Vega:OTTHUMG00000129146 5 5q31.1 leukocyte cell-derived chemotaxin 2 protein-coding LECT2 leukocyte cell-derived chemotaxin 2 O chondromodulin-II|leukocyte cell-derived chemotaxin-2 20121230 -9606 3952 LEP - LEPD|OB|OBS HGNC:6553|MIM:164160|Ensembl:ENSG00000174697|HPRD:01249|Vega:OTTHUMG00000157564 7 7q31.3 leptin protein-coding LEP leptin O leptin (murine obesity homolog)|leptin (obesity homolog, mouse)|obese protein|obese, mouse, homolog of|obesity factor 20121230 -9606 3953 LEPR - CD295|LEP-R|LEPRD|OB-R|OBR HGNC:6554|MIM:601007|Ensembl:ENSG00000116678|HPRD:03001|Vega:OTTHUMG00000009115 1 1p31 leptin receptor protein-coding LEPR leptin receptor O OB receptor|huB219 20121230 -9606 3954 LETM1 - - HGNC:6556|MIM:604407|Ensembl:ENSG00000168924|HPRD:05101|Vega:OTTHUMG00000121149 4 4p16.3 leucine zipper-EF-hand containing transmembrane protein 1 protein-coding LETM1 leucine zipper-EF-hand containing transmembrane protein 1 O LETM1 and EF-hand domain-containing protein 1, mitochondrial|Mdm38 homolog|leucine zipper-EF-hand-containing transmembrane protein 1 20121230 -9606 3955 LFNG - SCDO3 HGNC:6560|MIM:602576|Ensembl:ENSG00000106003|Vega:OTTHUMG00000152043 7 7p22.2 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase O beta-1,3-N-acetylglucosaminyltransferase lunatic fringe 20121230 -9606 3956 LGALS1 - GAL1|GBP HGNC:6561|MIM:150570|Ensembl:ENSG00000100097|HPRD:01040|Vega:OTTHUMG00000150661 22 22q13.1 lectin, galactoside-binding, soluble, 1 protein-coding LGALS1 lectin, galactoside-binding, soluble, 1 O 14 kDa laminin-binding protein|14 kDa lectin|HBL|HLBP14|HPL|S-Lac lectin 1|beta-galactoside-binding lectin L-14-I|beta-galactoside-binding protein 14kDa|gal-1|galaptin|galectin 1|galectin-1|lactose-binding lectin 1|putative MAPK-activating protein PM12 20121230 -9606 3957 LGALS2 - HL14 HGNC:6562|MIM:150571|Ensembl:ENSG00000100079|HPRD:08859|Vega:OTTHUMG00000150590 22 22q13.1 lectin, galactoside-binding, soluble, 2 protein-coding LGALS2 lectin, galactoside-binding, soluble, 2 O S-Lac lectin 2|beta-galactoside-binding lectin L-14-II|gal-2|galectin 2|galectin-2|lactose-binding lectin 2 20121230 -9606 3958 LGALS3 - CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 HGNC:6563|MIM:153619|Ensembl:ENSG00000131981|HPRD:01090|HPRD:17026|Vega:OTTHUMG00000171030 14 14q22.3 lectin, galactoside-binding, soluble, 3 protein-coding LGALS3 lectin, galactoside-binding, soluble, 3 O 35 kDa lectin|IgE-binding protein|MAC-2 antigen|carbohydrate-binding protein 35|galactose-specific lectin 3|galectin-3|laminin-binding protein|lectin L-29 20121230 -9606 3959 LGALS3BP - 90K|BTBD17B|MAC-2-BP|TANGO10B HGNC:6564|MIM:600626|Ensembl:ENSG00000108679|HPRD:02796|Vega:OTTHUMG00000177572 17 17q25 lectin, galactoside-binding, soluble, 3 binding protein protein-coding LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein O L3 antigen|MAC2BP|Mac-2-binding protein|basement membrane autoantigen p105|galectin-3-binding protein|lectin galactoside-binding soluble 3-binding protein|mac-2 BP|serum protein 90K|transport and golgi organization 10 homolog B|tumor-associated antigen 90K 20121230 -9606 3960 LGALS4 - GAL4|L36LBP HGNC:6565|MIM:602518|Ensembl:ENSG00000171747|HPRD:03949 19 19q13.2 lectin, galactoside-binding, soluble, 4 protein-coding LGALS4 lectin, galactoside-binding, soluble, 4 O L-36 lactose-binding protein|antigen NY-CO-27|gal-4|galectin 4|galectin-4|lactose-binding lectin 4 20121230 -9606 3963 LGALS7 - GAL7|LGALS7A HGNC:6568|MIM:600615|Ensembl:ENSG00000205076|HPRD:09002 19 19q13.2 lectin, galactoside-binding, soluble, 7 protein-coding LGALS7 lectin, galactoside-binding, soluble, 7 O galectin 7|galectin-7 20121230 -9606 3964 LGALS8 RP11-385F5.1 Gal-8|PCTA-1|PCTA1|Po66-CBP HGNC:6569|MIM:606099|Ensembl:ENSG00000116977|HPRD:09356|Vega:OTTHUMG00000039953 1 1q43 lectin, galactoside-binding, soluble, 8 protein-coding LGALS8 lectin, galactoside-binding, soluble, 8 O Po66 carbohydrate binding protein|galectin 8|galectin-8|galectin-8g|po66 carbohydrate-binding protein|prostate carcinoma tumor antigen 1 20121230 -9606 3965 LGALS9 - HUAT|LGALS9A HGNC:6570|MIM:601879|Ensembl:ENSG00000168961|HPRD:03528|Vega:OTTHUMG00000179831 17 17q11.2 lectin, galactoside-binding, soluble, 9 protein-coding LGALS9 lectin, galactoside-binding, soluble, 9 O ecalectin|gal-9|galectin 9|galectin-9|tumor antigen HOM-HD-21|urate transporter/channel protein 20121230 -9606 3972 LHB - CGB4|LSH-B|hLHB HGNC:6584|MIM:152780|Ensembl:ENSG00000104826|HPRD:01072 19 19q13.32 luteinizing hormone beta polypeptide protein-coding LHB luteinizing hormone beta polypeptide O LSH-beta|interstitial cell stimulating hormone, beta chain|luteinizing hormone beta subunit|lutropin beta chain|lutropin subunit beta 20121230 -9606 3973 LHCGR - HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 HGNC:6585|MIM:152790|Ensembl:ENSG00000138039|HPRD:01073|Vega:OTTHUMG00000129257 2 2p21 luteinizing hormone/choriogonadotropin receptor protein-coding LHCGR luteinizing hormone/choriogonadotropin receptor O hypergonadotropic hypogonadism|lutropin-choriogonadotropic hormone receptor|lutropin/choriogonadotropin receptor 20121230 -9606 3975 LHX1 - LIM-1|LIM1 HGNC:6593|MIM:601999|Ensembl:ENSG00000132130|HPRD:09067|Vega:OTTHUMG00000133068 17 17q12 LIM homeobox 1 protein-coding LHX1 LIM homeobox 1 O LIM homeobox protein 1|LIM/homeobox protein Lhx1|homeobox protein Lim-1 20121230 -9606 3976 LIF - CDF|DIA|HILDA|MLPLI HGNC:6596|MIM:159540|Ensembl:ENSG00000128342|HPRD:08869|Vega:OTTHUMG00000150910 22 22q12.2 leukemia inhibitory factor protein-coding LIF leukemia inhibitory factor O D factor|cholinergic differentiation factor|differentiation inhibitory activity|differentiation-inducing factor|differentiation-stimulating factor|hepatocyte-stimulating factor III|human interleukin in DA cells|melanoma-derived LPL inhibitor 20121230 -9606 3977 LIFR - CD118|LIF-R|SJS2|STWS|SWS HGNC:6597|MIM:151443|Ensembl:ENSG00000113594|HPRD:01048|Vega:OTTHUMG00000131138 5 5p13-p12 leukemia inhibitory factor receptor alpha protein-coding LIFR leukemia inhibitory factor receptor alpha O CD118 antigen|LIF receptor|leukemia inhibitory factor receptor 20121230 -9606 3978 LIG1 - - HGNC:6598|MIM:126391|Ensembl:ENSG00000105486|HPRD:00534 19 19q13.2-q13.3 ligase I, DNA, ATP-dependent protein-coding LIG1 ligase I, DNA, ATP-dependent O DNA ligase 1|polydeoxyribonucleotide synthase [ATP] 1 20121230 -9606 3980 LIG3 - LIG2 HGNC:6600|MIM:600940|Ensembl:ENSG00000005156|HPRD:02966|Vega:OTTHUMG00000128519 17 17q11.2-q12 ligase III, DNA, ATP-dependent protein-coding LIG3 ligase III, DNA, ATP-dependent O DNA ligase 3|ligase II, DNA, ATP-dependent|polydeoxyribonucleotide synthase [ATP] 3 20121230 -9606 3981 LIG4 - - HGNC:6601|MIM:601837|Ensembl:ENSG00000174405|HPRD:03500|Vega:OTTHUMG00000017328 13 13q33-q34 ligase IV, DNA, ATP-dependent protein-coding LIG4 ligase IV, DNA, ATP-dependent O DNA joinase|DNA ligase 4|DNA ligase IV|DNA repair enzyme|polydeoxyribonucleotide synthase [ATP] 4|polynucleotide ligase|sealase 20121230 -9606 3982 LIM2 - MP17|MP19 HGNC:6610|MIM:154045|Ensembl:ENSG00000105370|HPRD:01097 19 19q13.4 lens intrinsic membrane protein 2, 19kDa protein-coding LIM2 lens intrinsic membrane protein 2, 19kDa O MP18|MP20|lens fiber membrane intrinsic protein 20121230 -9606 3983 ABLIM1 RP11-317F20.1 ABLIM|LIMAB1|LIMATIN|abLIM-1 HGNC:78|MIM:602330|Ensembl:ENSG00000099204|HPRD:03819|Vega:OTTHUMG00000019088 10 10q25 actin binding LIM protein 1 protein-coding ABLIM1 actin binding LIM protein 1 O actin-binding LIM protein 1|actin-binding LIM protein family member 1|actin-binding double-zinc-finger protein 20121230 -9606 3984 LIMK1 - LIMK|LIMK-1 HGNC:6613|MIM:601329|Ensembl:ENSG00000106683|HPRD:03210|Vega:OTTHUMG00000023448 7 7q11.23 LIM domain kinase 1 protein-coding LIMK1 LIM domain kinase 1 O LIM motif-containing protein kinase 20121230 -9606 3985 LIMK2 - - HGNC:6614|MIM:601988|Ensembl:ENSG00000182541|HPRD:03585|Vega:OTTHUMG00000151251 22 22q12.2 LIM domain kinase 2 protein-coding LIMK2 LIM domain kinase 2 O - 20121230 -9606 3987 LIMS1 - PINCH|PINCH-1|PINCH1 HGNC:6616|MIM:602567|Ensembl:ENSG00000169756|HPRD:03978|Vega:OTTHUMG00000130983 2 2q12.3 LIM and senescent cell antigen-like domains 1 protein-coding LIMS1 LIM and senescent cell antigen-like domains 1 O LIM and senescent cell antigen-like-containing domain protein 1|particularly interesting new Cys-His protein 1|renal carcinoma antigen NY-REN-48 20121230 -9606 3988 LIPA RP11-341B24.1 CESD|LAL HGNC:6617|MIM:613497|Ensembl:ENSG00000107798|HPRD:02044|Vega:OTTHUMG00000018716 10 10q23.2-q23.3 lipase A, lysosomal acid, cholesterol esterase protein-coding LIPA lipase A, lysosomal acid, cholesterol esterase O acid cholesteryl ester hydrolase|cholesterol ester hydrolase|cholesteryl esterase|lysosomal acid lipase|lysosomal acid lipase/cholesteryl ester hydrolase|sterol esterase 20121230 -9606 3989 LIPB - - HGNC:6618|MIM:247980 16 - lipase B, lysosomal acid unknown LIPB lipase B, lysosomal acid O - 20080828 -9606 3990 LIPC - HDLCQ12|HL|HTGL|LIPH HGNC:6619|MIM:151670|Ensembl:ENSG00000166035|HPRD:01058|Vega:OTTHUMG00000132632 15 15q21-q23 lipase, hepatic protein-coding LIPC lipase, hepatic O hepatic lipase|hepatic triacylglycerol lipase|lipase member C 20121230 -9606 3991 LIPE - HSL|LHS HGNC:6621|MIM:151750|Ensembl:ENSG00000079435|HPRD:01062 19 19q13.2 lipase, hormone-sensitive protein-coding LIPE lipase, hormone-sensitive O hormone-sensitive lipase|hormone-sensitive lipase testicular isoform 20121230 -9606 3992 FADS1 - D5D|FADS6|FADSD5|LLCDL1|TU12 HGNC:3574|MIM:606148|Ensembl:ENSG00000149485|HPRD:06935|Vega:OTTHUMG00000157155 11 11q12.2-q13.1 fatty acid desaturase 1 protein-coding FADS1 fatty acid desaturase 1 O delta(5) desaturase|delta(5) fatty acid desaturase|delta-5 desaturase|delta-5 fatty acid desaturase|linoleoyl-CoA desaturase (delta-6-desaturase)-like 1 20121230 -9606 3993 LLGL2 - HGL|LGL2 HGNC:6629|Ensembl:ENSG00000073350|HPRD:10041|Vega:OTTHUMG00000179685 17 17q25.1 lethal giant larvae homolog 2 (Drosophila) protein-coding LLGL2 lethal giant larvae homolog 2 (Drosophila) O human giant larvae homolog|lethal(2) giant larvae protein homolog 2 20121230 -9606 3995 FADS3 - CYB5RP|LLCDL3 HGNC:3576|MIM:606150|Ensembl:ENSG00000221968|HPRD:07547|Vega:OTTHUMG00000167500 11 11q12-q13.1 fatty acid desaturase 3 protein-coding FADS3 fatty acid desaturase 3 O cytochrome b5-related protein|delta-9 fatty acid desaturase|delta-9-desaturase|linoleoyl-CoA desaturase (delta-9-desaturase)-like 3 20121230 -9606 3996 LLGL1 - DLG4|HUGL|HUGL-1|HUGL1|LLGL HGNC:6628|MIM:600966|Ensembl:ENSG00000131899|HPRD:02982|Vega:OTTHUMG00000059396 17 17p11.2 lethal giant larvae homolog 1 (Drosophila) protein-coding LLGL1 lethal giant larvae homolog 1 (Drosophila) O human homolog to the D-lgl gene protein|lethal(2) giant larvae protein homolog 1 20121230 -9606 3998 LMAN1 - ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 HGNC:6631|MIM:601567|Ensembl:ENSG00000074695|HPRD:03338|Vega:OTTHUMG00000132758 18 18q21.3-q22 lectin, mannose-binding, 1 protein-coding LMAN1 lectin, mannose-binding, 1 O ER-Golgi intermediate compartment 53 kDa protein|endoplasmic reticulum-golgi intermediate compartment protein 53|intracellular mannose specific lectin|intracellular mannose-specific lectin MR60|protein ERGIC-53 20121230 -9606 4000 LMNA RP11-54H19.1 CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1 HGNC:6636|MIM:150330|Ensembl:ENSG00000160789|HPRD:01035|Vega:OTTHUMG00000013961 1 1q22 lamin A/C protein-coding LMNA lamin A/C O 70 kDa lamin|lamin|lamin A/C-like 1|prelamin-A/C|renal carcinoma antigen NY-REN-32 20121230 -9606 4001 LMNB1 - ADLD|LMN|LMN2|LMNB HGNC:6637|MIM:150340|Ensembl:ENSG00000113368|HPRD:01036|Vega:OTTHUMG00000128969 5 5q23.2 lamin B1 protein-coding LMNB1 lamin B1 O lamin-B1 20121230 -9606 4004 LMO1 - RBTN1|RHOM1|TTG1 HGNC:6641|MIM:186921|Ensembl:ENSG00000166407|HPRD:01738|Vega:OTTHUMG00000165833 11 11p15 LIM domain only 1 (rhombotin 1) protein-coding LMO1 LIM domain only 1 (rhombotin 1) O LIM domain only protein 1|LMO-1|T-cell translocation gene 1|T-cell translocation protein 1|cysteine-rich protein TTG-1|rhombotin-1 20121230 -9606 4005 LMO2 - RBTN2|RBTNL1|RHOM2|TTG2 HGNC:6642|MIM:180385|Ensembl:ENSG00000135363|HPRD:01586|Vega:OTTHUMG00000157176 11 11p13 LIM domain only 2 (rhombotin-like 1) protein-coding LMO2 LIM domain only 2 (rhombotin-like 1) O LIM domain only protein 2|LMO-2|T-cell translocation gene 2|T-cell translocation protein 2|cysteine-rich protein TTG-2|rhombotin 2|rhombotin-2|rhombotin-like 1 20121230 -9606 4007 PRICKLE3 - LMO6 HGNC:6645|MIM:300111|Ensembl:ENSG00000012211|HPRD:02120|Vega:OTTHUMG00000024134 X Xp11.23 prickle homolog 3 (Drosophila) protein-coding PRICKLE3 prickle homolog 3 (Drosophila) O LIM domain only protein 6|LMO-6|prickle-like protein 3|triple LIM domain protein 6 20121230 -9606 4008 LMO7 RP11-332E3.2 FBX20|FBXO20|LOMP HGNC:6646|MIM:604362|Ensembl:ENSG00000136153|HPRD:05078|Vega:OTTHUMG00000017093 13 13q22.2 LIM domain 7 protein-coding LMO7 LIM domain 7 O F-box only protein 20|F-box protein Fbx20|LIM domain only 7 protein|LIM domain only protein 7|LMO-7|zinc-finger domain-containing protein 20121230 -9606 4009 LMX1A - LMX1|LMX1.1 HGNC:6653|MIM:600298|Ensembl:ENSG00000162761|HPRD:02623|Vega:OTTHUMG00000034575 1 1q24.1 LIM homeobox transcription factor 1, alpha protein-coding LMX1A LIM homeobox transcription factor 1, alpha O LIM homeobox transcription factor 1-alpha|LIM/homeobox protein 1.1 20121230 -9606 4010 LMX1B - LMX1.2|NPS1 HGNC:6654|MIM:602575|Ensembl:ENSG00000136944|HPRD:03986|Vega:OTTHUMG00000020692 9 9q33.3 LIM homeobox transcription factor 1, beta protein-coding LMX1B LIM homeobox transcription factor 1, beta O LIM homeobox transcription factor 1-beta|LIM/homeobox protein 1.2|LIM/homeobox protein LMX1B|LMX-1.2 20121230 -9606 4012 LNPEP - CAP|IRAP|P-LAP|PLAP HGNC:6656|MIM:151300|Ensembl:ENSG00000113441|HPRD:01041|HPRD:08255|Vega:OTTHUMG00000128719 5 5q15 leucyl/cystinyl aminopeptidase protein-coding LNPEP leucyl/cystinyl aminopeptidase O AT (4) receptor|angiotensin IV receptor|cystinyl aminopeptidase|insulin-regulated aminopeptidase|insulin-regulated membrane aminopeptidase|insulin-responsive aminopeptidase|leucyl-cystinyl aminopeptidase|otase|oxytocinase|placental leucine aminopeptidase|vasopressinase 20121230 -9606 4013 VWA5A - BCSC-1|BCSC1|LOH11CR2A HGNC:6658|MIM:602929|Ensembl:ENSG00000110002|HPRD:04238|Vega:OTTHUMG00000165971 11 11q24.1 von Willebrand factor A domain containing 5A protein-coding VWA5A von Willebrand factor A domain containing 5A O breast cancer suppressor candidate 1|loss of heterozygosity 11 chromosomal region 2 gene A protein|loss of heterozygosity, 11, chromosomal region 2, gene A|ortholog of mouse AW551984|von Willebrand factor A domain-containing protein 5A 20121230 -9606 4014 LOR - - HGNC:6663|MIM:152445|Ensembl:ENSG00000203782|HPRD:01070|Vega:OTTHUMG00000013938 1 1q21 loricrin protein-coding LOR loricrin O - 20121230 -9606 4015 LOX - - HGNC:6664|MIM:153455|Ensembl:ENSG00000113083|HPRD:01087|Vega:OTTHUMG00000128914 5 5q23.2 lysyl oxidase protein-coding LOX lysyl oxidase O protein-lysine 6-oxidase 20121230 -9606 4016 LOXL1 - LOL|LOXL HGNC:6665|MIM:153456|Ensembl:ENSG00000129038|HPRD:08861|Vega:OTTHUMG00000137595 15 15q22 lysyl oxidase-like 1 protein-coding LOXL1 lysyl oxidase-like 1 O lysyl oxidase homolog 1|lysyl oxidase-like protein 1 20121230 -9606 4017 LOXL2 - LOR2|WS9-14 HGNC:6666|MIM:606663|Ensembl:ENSG00000134013|HPRD:09446|Vega:OTTHUMG00000163797 8 8p21.3 lysyl oxidase-like 2 protein-coding LOXL2 lysyl oxidase-like 2 O lysyl oxidase homolog 2|lysyl oxidase related 2|lysyl oxidase-like protein 2|lysyl oxidase-related protein 2|lysyl oxidase-related protein WS9-14 20121230 -9606 4018 LPA - AK38|APOA|LP HGNC:6667|MIM:152200|Ensembl:ENSG00000198670|HPRD:01063|Vega:OTTHUMG00000015956 6 6q26 lipoprotein, Lp(a) protein-coding LPA lipoprotein, Lp(a) O antiangiogenic AK38 protein|apo(a)|apolipoprotein(a)|lp(a) 20121230 -9606 4019 LPAL1 - - HGNC:6668 6 6q26-q27 lipoprotein, Lp(a)-like 1 protein-coding LPAL1 lipoprotein, Lp(a)-like 1 O - 20080828 -9606 4023 LPL - HDLCQ11|LIPD HGNC:6677|MIM:609708|Ensembl:ENSG00000175445|HPRD:01999|Vega:OTTHUMG00000036645 8 8p22 lipoprotein lipase protein-coding LPL lipoprotein lipase O - 20121230 -9606 4025 LPO - SPO HGNC:6678|MIM:150205|Ensembl:ENSG00000167419|HPRD:11825|Vega:OTTHUMG00000178921 17 17q23.1 lactoperoxidase protein-coding LPO lactoperoxidase O salivary peroxidase 20121230 -9606 4026 LPP - - HGNC:6679|MIM:600700|Ensembl:ENSG00000145012|HPRD:02828|Vega:OTTHUMG00000156387 3 3q28 LIM domain containing preferred translocation partner in lipoma protein-coding LPP LIM domain containing preferred translocation partner in lipoma O LIM protein|lipoma-preferred partner 20121230 -9606 4029 L1RE1 - L1.2|LRE1 HGNC:6686|MIM:151626 22 22q11.1-q11.2 LINE1 retrotransposable element 1 other L1RE1 LINE1 retrotransposable element 1 O - 20121021 -9606 4030 L1RE2 - LRE2 HGNC:6687|MIM:151628 1 1q LINE1 retrotransposable element 2 other L1RE2 LINE1 retrotransposable element 2 O - 20120710 -9606 4033 LRMP - JAW1 HGNC:6690|MIM:602003|Ensembl:ENSG00000118308|HPRD:03593|Vega:OTTHUMG00000170192 12 12p12.1 lymphoid-restricted membrane protein protein-coding LRMP lymphoid-restricted membrane protein O protein Jaw1 20121230 -9606 4034 LRCH4 - LRN|LRRN1|LRRN4|PP14183 HGNC:6691|Ensembl:ENSG00000077454|HPRD:10062|Vega:OTTHUMG00000159544 7 7q22 leucine-rich repeats and calponin homology (CH) domain containing 4 protein-coding LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 O leucine rich repeat neuronal 4|leucine-rich neuronal protein|leucine-rich repeat and calponin homology domain-containing protein 4|leucine-rich repeat neuronal protein 4 20121230 -9606 4035 LRP1 - A2MR|APOER|APR|CD91|IGFBP3R|LRP|TGFBR5 HGNC:6692|MIM:107770|Ensembl:ENSG00000123384|HPRD:00138|Vega:OTTHUMG00000044412 12 12q13-q14 low density lipoprotein receptor-related protein 1 protein-coding LRP1 low density lipoprotein receptor-related protein 1 O LRP-1|TbetaR-V/LRP-1/IGFBP-3 receptor|alpha-2-macroglobulin receptor|apolipoprotein E receptor|prolow-density lipoprotein receptor-related protein 1|type V tgf-beta receptor 20121230 -9606 4036 LRP2 - DBS|GP330 HGNC:6694|MIM:600073|Ensembl:ENSG00000081479|HPRD:02509|Vega:OTTHUMG00000132179 2 2q24-q31 low density lipoprotein receptor-related protein 2 protein-coding LRP2 low density lipoprotein receptor-related protein 2 O Heymann nephritis antigen homolog|LRP-2|calcium sensor protein|glycoprotein 330|low-density lipoprotein receptor-related protein 2|megalin 20121230 -9606 4037 LRP3 - - HGNC:6695|MIM:603159|Ensembl:ENSG00000130881|HPRD:04406|Vega:OTTHUMG00000180343 19 19q13.11 low density lipoprotein receptor-related protein 3 protein-coding LRP3 low density lipoprotein receptor-related protein 3 O 105 kDa low-density lipoprotein receptor-related protein|LRP-3|hLRp105|low-density lipoprotein receptor-related protein 3 20121230 -9606 4038 LRP4 - CLSS|LRP-4|LRP10|MEGF7|SOST2 HGNC:6696|MIM:604270|Ensembl:ENSG00000134569|HPRD:18517|Vega:OTTHUMG00000166700 11 11p11.2 low density lipoprotein receptor-related protein 4 protein-coding LRP4 low density lipoprotein receptor-related protein 4 O low-density lipoprotein receptor-related protein 4|multiple epidermal growth factor-like domains 7 20121230 -9606 4040 LRP6 - ADCAD2 HGNC:6698|MIM:603507|Ensembl:ENSG00000070018|HPRD:04617|Vega:OTTHUMG00000168540 12 12p13.2 low density lipoprotein receptor-related protein 6 protein-coding LRP6 low density lipoprotein receptor-related protein 6 O LRP-6|low-density lipoprotein receptor-related protein 6 20121230 -9606 4041 LRP5 - BMND1|EVR1|EVR4|HBM|LR3|LRP7|OPPG|OPS|OPTA1|VBCH2 HGNC:6697|MIM:603506|Ensembl:ENSG00000162337|HPRD:04616|Vega:OTTHUMG00000167570 11 11q13.4 low density lipoprotein receptor-related protein 5 protein-coding LRP5 low density lipoprotein receptor-related protein 5 O LRP-5|low density lipoprotein receptor-related protein 7|low-density lipoprotein receptor-related protein 5 20121230 -9606 4043 LRPAP1 RP11-529E10.3 A2MRAP|A2RAP|HBP44|MRAP|RAP HGNC:6701|MIM:104225|Ensembl:ENSG00000163956|HPRD:00082|Vega:OTTHUMG00000090299 4 4p16.3 low density lipoprotein receptor-related protein associated protein 1 protein-coding LRPAP1 low density lipoprotein receptor-related protein associated protein 1 O alpha-2-MRAP|alpha-2-macroglobulin receptor-associated protein|alpha-2-macroglobulin receptor-associated protein 1|lipoprotein receptor associated protein|low density lipoprotein receptor-related protein-associated protein 1|low density lipoprotein-related protein-associated protein 1 (alpha-2-macroglobulin receptor-associated protein 1) 20121230 -9606 4045 LSAMP - IGLON3|LAMP HGNC:6705|MIM:603241|Ensembl:ENSG00000185565|HPRD:09128|Vega:OTTHUMG00000159308 3 3q13.2-q21 limbic system-associated membrane protein protein-coding LSAMP limbic system-associated membrane protein O IgLON family member 3 20121230 -9606 4046 LSP1 - WP34|pp52 HGNC:6707|MIM:153432|Ensembl:ENSG00000130592|HPRD:01083|Vega:OTTHUMG00000012252 11 11p15.5 lymphocyte-specific protein 1 protein-coding LSP1 lymphocyte-specific protein 1 O 47 kDa actin binding protein|47 kDa actin-binding protein|52 kDa phosphoprotein|F-actin binding and cytoskeleton associated protein|leufactin (leukocyte F-actin binding protein)|leukocyte-specific protein 1|lymphocyte-specific antigen WP34 20121230 -9606 4047 LSS - OSC HGNC:6708|MIM:600909|Ensembl:ENSG00000160285|HPRD:02945|Vega:OTTHUMG00000090633 21 21q22.3 lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) protein-coding LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) O 2,3-epoxysqualene--lanosterol cyclase|2,3-epoxysqualene-lanosterol cyclase|hOSC|lanosterol synthase|oxidosqualene--lanosterol cyclase 20121230 -9606 4048 LTA4H - - HGNC:6710|MIM:151570|Ensembl:ENSG00000111144|HPRD:01056|Vega:OTTHUMG00000170355 12 12q22 leukotriene A4 hydrolase protein-coding LTA4H leukotriene A4 hydrolase O LTA-4 hydrolase|leukotriene A-4 hydrolase 20121230 -9606 4049 LTA DAMA-25N12.13-004 LT|TNFB|TNFSF1 HGNC:6709|MIM:153440|Ensembl:ENSG00000226979|HPRD:01084|Vega:OTTHUMG00000031135 6 6p21.3 lymphotoxin alpha (TNF superfamily, member 1) protein-coding LTA lymphotoxin alpha (TNF superfamily, member 1) O LT-alpha|TNF-beta|lymphotoxin-alpha|tumor necrosis factor beta|tumor necrosis factor ligand superfamily member 1 20121230 -9606 4050 LTB DAAP-90L16.4 TNFC|TNFSF3|p33 HGNC:6711|MIM:600978|Ensembl:ENSG00000227507|HPRD:02987|Vega:OTTHUMG00000031136 6 6p21.3 lymphotoxin beta (TNF superfamily, member 3) protein-coding LTB lymphotoxin beta (TNF superfamily, member 3) O LT-beta|TNF-C|lymphotoxin-beta|tumor necrosis factor C|tumor necrosis factor ligand superfamily member 3 20121230 -9606 4051 CYP4F3 - CPF3|CYP4F|LTB4H HGNC:2646|MIM:601270|Ensembl:ENSG00000186529|HPRD:03169|Vega:OTTHUMG00000182374 19 19p13.2 cytochrome P450, family 4, subfamily F, polypeptide 3 protein-coding CYP4F3 cytochrome P450, family 4, subfamily F, polypeptide 3 O CYPIVF3|cytochrome P-450|cytochrome P450 4F3|cytochrome P450, subfamily IVF, polypeptide 3 (leukotriene B4 omega hydroxylase)|cytochrome P450-LTB-omega|leukotriene B4 omega hydroxylase|leukotriene-B(4) 20-monooxygenase 2|leukotriene-B(4) omega-hydroxylase 2|leukotriene-B4 20-monooxygenase 20121230 -9606 4052 LTBP1 - - HGNC:6714|MIM:150390|Ensembl:ENSG00000049323|HPRD:01039|Vega:OTTHUMG00000152118 2 2p22-p21 latent transforming growth factor beta binding protein 1 protein-coding LTBP1 latent transforming growth factor beta binding protein 1 O LTBP-1|TGF-beta1-BP-1|latent-transforming growth factor beta-binding protein 1|transforming growth factor beta-1-binding protein 1 20121230 -9606 4053 LTBP2 - C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 HGNC:6715|MIM:602091|Ensembl:ENSG00000119681|HPRD:03650|Vega:OTTHUMG00000171476 14 14q24 latent transforming growth factor beta binding protein 2 protein-coding LTBP2 latent transforming growth factor beta binding protein 2 O LTBP-2|latent-transforming growth factor beta-binding protein 2 20121230 -9606 4054 LTBP3 - LTBP-3|LTBP2|STHAG6|pp6425 HGNC:6716|MIM:602090|Ensembl:ENSG00000168056|HPRD:03649|Vega:OTTHUMG00000166575 11 11q13.1 latent transforming growth factor beta binding protein 3 protein-coding LTBP3 latent transforming growth factor beta binding protein 3 O latent TGF beta binding protein 3|latent-transforming growth factor beta-binding protein 3 20121230 -9606 4055 LTBR - CD18|D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 HGNC:6718|MIM:600979|Ensembl:ENSG00000111321|HPRD:02988|Vega:OTTHUMG00000168356 12 12p13 lymphotoxin beta receptor (TNFR superfamily, member 3) protein-coding LTBR lymphotoxin beta receptor (TNFR superfamily, member 3) O lymphotoxin B receptor|tumor necrosis factor C receptor|tumor necrosis factor receptor 2-related protein|tumor necrosis factor receptor superfamily member 3|tumor necrosis factor receptor type III 20121230 -9606 4056 LTC4S - - HGNC:6719|MIM:246530|Ensembl:ENSG00000213316|HPRD:02004|Vega:OTTHUMG00000150314 5 5q35 leukotriene C4 synthase protein-coding LTC4S leukotriene C4 synthase O LTC4 synthase 20121230 -9606 4057 LTF - GIG12|HLF2|LF HGNC:6720|MIM:150210|Ensembl:ENSG00000012223|HPRD:01028|Vega:OTTHUMG00000156325 3 3p21.31 lactotransferrin protein-coding LTF lactotransferrin O growth-inhibiting protein 12|neutrophil lactoferrin|talalactoferrin 20121230 -9606 4058 LTK - TYK1 HGNC:6721|MIM:151520|Ensembl:ENSG00000062524|HPRD:01052|Vega:OTTHUMG00000130339 15 15q15.1-q21.1 leukocyte receptor tyrosine kinase protein-coding LTK leukocyte receptor tyrosine kinase O leukocyte tyrosine kinase receptor|protein tyrosine kinase 1 20121230 -9606 4059 BCAM - AU|CD239|LU|MSK19 HGNC:6722|MIM:612773|Ensembl:ENSG00000187244|HPRD:00197|Vega:OTTHUMG00000180838 19 19q13.2 basal cell adhesion molecule (Lutheran blood group) protein-coding BCAM basal cell adhesion molecule (Lutheran blood group) O Auberger b antigen|B-CAM cell surface glycoprotein|B-cell adhesion molecule|F8/G253 antigen|antigen identified by monoclonal antibody F8|basal cell adhesion molecule|basal cell adhesion molecule (Lu and Au blood groups)|glycoprotein 95kDa|lutheran antigen|lutheran blood group glycoprotein 20121230 -9606 4060 LUM - LDC|SLRR2D HGNC:6724|MIM:600616|Ensembl:ENSG00000139329|HPRD:02793|Vega:OTTHUMG00000170074 12 12q21.3-q22 lumican protein-coding LUM lumican O KSPG lumican|keratan sulfate proteoglycan lumican|lumican proteoglycan 20121230 -9606 4061 LY6E - RIG-E|RIGE|SCA-2|SCA2|TSA-1 HGNC:6727|MIM:601384|Ensembl:ENSG00000160932|HPRD:03227|Vega:OTTHUMG00000164754 8 8q24.3 lymphocyte antigen 6 complex, locus E protein-coding LY6E lymphocyte antigen 6 complex, locus E O ly-6E|lymphocyte antigen 6E|retinoic acid induced gene E|retinoic acid-induced gene E protein|stem cell antigen 2|thymic shared antigen 1 20121230 -9606 4062 LY6H - NMLY6 HGNC:6728|MIM:603625|Ensembl:ENSG00000176956|HPRD:04691|Vega:OTTHUMG00000154890 8 8q24.3 lymphocyte antigen 6 complex, locus H protein-coding LY6H lymphocyte antigen 6 complex, locus H O ly-6H|lymphocyte antigen 6H 20121230 -9606 4063 LY9 RP11-312J18.1 CD229|SLAMF3|hly9|mLY9 HGNC:6730|MIM:600684|Ensembl:ENSG00000122224|HPRD:02817|Vega:OTTHUMG00000024007 1 1q23.3 lymphocyte antigen 9 protein-coding LY9 lymphocyte antigen 9 O T-lymphocyte surface antigen Ly-9|cell surface molecule Ly-9 20121230 -9606 4064 CD180 - LY64|Ly78|RP105 HGNC:6726|MIM:602226|Ensembl:ENSG00000134061|HPRD:03749|Vega:OTTHUMG00000131229 5 5q12 CD180 molecule protein-coding CD180 CD180 molecule O CD180 antigen|lymphocyte antigen 64|lymphocyte antigen-64, radioprotective, 105kDa|radioprotective 105 kDa protein 20121230 -9606 4065 LY75 - CD205|CLEC13B|DEC-205|GP200-MR6|LY-75 HGNC:6729|MIM:604524|Ensembl:ENSG00000054219|HPRD:05161|Vega:OTTHUMG00000132025 2 2q24 lymphocyte antigen 75 protein-coding LY75 lymphocyte antigen 75 O C-type lectin domain family 13 member B 20121230 -9606 4066 LYL1 - bHLHa18 HGNC:6734|MIM:151440|Ensembl:ENSG00000104903|HPRD:01046|Vega:OTTHUMG00000180736 19 19p13.2 lymphoblastic leukemia derived sequence 1 protein-coding LYL1 lymphoblastic leukemia derived sequence 1 O class A basic helix-loop-helix protein 18|protein lyl-1 20121230 -9606 4067 LYN - JTK8|p53Lyn|p56Lyn HGNC:6735|MIM:165120|Ensembl:ENSG00000254087|HPRD:01301|Vega:OTTHUMG00000044345 8 8q13 v-yes-1 Yamaguchi sarcoma viral related oncogene homolog protein-coding LYN v-yes-1 Yamaguchi sarcoma viral related oncogene homolog O lck/Yes-related novel protein tyrosine kinase|tyrosine-protein kinase Lyn 20121230 -9606 4068 SH2D1A RP5-1052M9.3 DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD HGNC:10820|MIM:300490|Ensembl:ENSG00000183918|HPRD:02390|Vega:OTTHUMG00000022344 X Xq25 SH2 domain containing 1A protein-coding SH2D1A SH2 domain containing 1A O Duncan disease SH2-protein|SH2 domain-containing protein 1A|SLAM associated protein/SH2 domain protein 1A|SLAM-associated protein|T cell signal transduction molecule SAP|T-cell signal transduction molecule SAP|signaling lymphocyte activation molecule-associated protein|signaling lymphocytic activation molecule-associated protein 20121230 -9606 4069 LYZ - LZM HGNC:6740|MIM:153450|Ensembl:ENSG00000090382|HPRD:01085|Vega:OTTHUMG00000169342 12 12q15 lysozyme protein-coding LYZ lysozyme O 1,4-beta-N-acetylmuramidase C|lysozyme C|renal amyloidosis 20121230 -9606 4070 TACSTD2 - EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 HGNC:11530|MIM:137290|Ensembl:ENSG00000184292|HPRD:00672|Vega:OTTHUMG00000010067 1 1p32 tumor-associated calcium signal transducer 2 protein-coding TACSTD2 tumor-associated calcium signal transducer 2 O 40kD glycoprotein, identified by monoclonal antibody GA733|cell surface glycoprotein TROP2|cell surface glycoprotein Trop-2|epithelial glycoprotein-1|gastrointestinal tumor-associated antigen GA7331|membrane component chromosome 1 surface marker 1|membrane component, chromosome 1, surface marker 1|pancreatic carcinoma marker protein GA733-1|pancreatic carcinoma marker protein GA7331 20121230 -9606 4071 TM4SF1 - H-L6|L6|M3S1|TAAL6 HGNC:11853|MIM:191155|Ensembl:ENSG00000169908|HPRD:01854|Vega:OTTHUMG00000159597 3 3q21-q25 transmembrane 4 L six family member 1 protein-coding TM4SF1 transmembrane 4 L six family member 1 O membrane component chromosome 3 surface marker 1|membrane component, chromosome 3, surface marker 1|transmembrane 4 L6 family member 1|transmembrane 4 superfamily member 1|tumor-associated antigen L6 20121230 -9606 4072 EPCAM - DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1 HGNC:11529|MIM:185535|Ensembl:ENSG00000119888|HPRD:01709|Vega:OTTHUMG00000128853 2 2p21 epithelial cell adhesion molecule protein-coding EPCAM epithelial cell adhesion molecule O adenocarcinoma-associated antigen|cell surface glycoprotein Trop-1|epithelial glycoprotein 314|human epithelial glycoprotein-2|major gastrointestinal tumor-associated protein GA733-2|membrane component, chromosome 4, surface marker (35kD glycoprotein)|tumor-associated calcium signal transducer 1 20121230 -9606 4074 M6PR - CD-MPR|MPR 46|MPR-46|MPR46|SMPR HGNC:6752|MIM:154540|Ensembl:ENSG00000003056|HPRD:01106|Vega:OTTHUMG00000168276 12 12p13 mannose-6-phosphate receptor (cation dependent) protein-coding M6PR mannose-6-phosphate receptor (cation dependent) O 46-kDa mannose 6-phosphate receptor|CD Man-6-P receptor|Mr 46,000 Man6PR|cation-dependent mannose-6-phosphate receptor|small mannose 6-phosphate receptor 20121230 -9606 4076 CAPRIN1 - GPIAP1|GPIP137|M11S1|RNG105|p137GPI HGNC:6743|MIM:601178|Ensembl:ENSG00000135387|HPRD:03108|Vega:OTTHUMG00000166248 11 11p13 cell cycle associated protein 1 protein-coding CAPRIN1 cell cycle associated protein 1 O GPI-anchored membrane protein 1|GPI-anchored protein p137|GPI-p137|RNA granule protein 105|activation/proliferation-associated protein 1|caprin 1|caprin-1|cell cycle-associated protein 1|cytoplasmic activation- and proliferation-associated protein 1|cytoplasmic activation/proliferation-associated protein-1|membrane component chromosome 11 surface marker 1|membrane component, chromosome 11, surface marker 1 20121230 -9606 4077 NBR1 MIG19 1A1-3B|M17S2 HGNC:6746|MIM:166945|Ensembl:ENSG00000188554|HPRD:01326|Vega:OTTHUMG00000180878 17 17q21.31 neighbor of BRCA1 gene 1 protein-coding NBR1 neighbor of BRCA1 gene 1 O cell migration-inducing gene 19 protein|membrane component chromosome 17 surface marker 2|membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125)|migration-inducing protein 19|neighbor of BRCA1 gene 1 protein|next to BRCA1 gene 1 protein|protein 1A1-3B 20121230 -9606 4080 MAA - LZMS|MCOPS1 HGNC:6755|MIM:309800 X - microphthalmia or anophthalmia and associated anomalies unknown MAA microphthalmia or anophthalmia and associated anomalies O - 20120622 -9606 4081 MAB21L1 Nbla00126 CAGR1 HGNC:6757|MIM:601280|Ensembl:ENSG00000180660|HPRD:03178|Vega:OTTHUMG00000016723 13 13q13 mab-21-like 1 (C. elegans) protein-coding MAB21L1 mab-21-like 1 (C. elegans) O mab-21-like protein 1|protein mab-21-like 1 20121230 -9606 4082 MARCKS - 80K-L|MACS|PKCSL|PRKCSL HGNC:6759|MIM:177061|Ensembl:ENSG00000155130|HPRD:07519|Vega:OTTHUMG00000015406 6 6q22.2 myristoylated alanine-rich protein kinase C substrate protein-coding MARCKS myristoylated alanine-rich protein kinase C substrate O myristoylated alanine-rich C-kinase substrate|myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L)|phosphomyristin|protein kinase C substrate, 80 kDa protein, light chain 20121230 -9606 4083 MARCKSP1 - MACSL1 HGNC:6760 21 21q21.3 myristoylated alanine-rich protein kinase C substrate pseudogene 1 pseudo MARCKSP1 myristoylated alanine-rich protein kinase C substrate pseudogene 1 O - 20121230 -9606 4084 MXD1 - BHLHC58|MAD|MAD1 HGNC:6761|MIM:600021|Ensembl:ENSG00000059728|HPRD:02487|Vega:OTTHUMG00000129646 2 2p13-p12 MAX dimerization protein 1 protein-coding MXD1 MAX dimerization protein 1 O MAX-binding protein|antagonizer of myc transcriptional activity|max dimerization protein 1|max dimerizer 1 20121230 -9606 4085 MAD2L1 - HSMAD2|MAD2 HGNC:6763|MIM:601467|Ensembl:ENSG00000164109|HPRD:03274|Vega:OTTHUMG00000132967 4 4q27 MAD2 mitotic arrest deficient-like 1 (yeast) protein-coding MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) O MAD2 (mitotic arrest deficient, yeast, homolog)-like 1|MAD2-like protein 1|mitotic arrest deficient 2-like protein 1|mitotic arrest deficient, yeast, homolog-like 1|mitotic spindle assembly checkpoint protein MAD2A 20121230 -9606 4086 SMAD1 - BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 HGNC:6767|MIM:601595|Ensembl:ENSG00000170365|HPRD:03356|Vega:OTTHUMG00000161592 4 4q31 SMAD family member 1 protein-coding SMAD1 SMAD family member 1 O MAD homolog 1|MAD, mothers against decapentaplegic homolog 1|Mad-related protein 1|SMAD, mothers against DPP homolog 1|TGF-beta signaling protein 1|mothers against DPP homolog 1|mothers against decapentaplegic homolog 1|transforming growth factor-beta signaling protein 1|transforming growth factor-beta-signaling protein 1 20121230 -9606 4087 SMAD2 - JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 HGNC:6768|MIM:601366|Ensembl:ENSG00000175387|HPRD:03221|Vega:OTTHUMG00000132652 18 18q21.1 SMAD family member 2 protein-coding SMAD2 SMAD family member 2 O MAD homolog 2|SMAD, mothers against DPP homolog 2|Sma- and Mad-related protein 2|mother against DPP homolog 2|mothers against decapentaplegic homolog 2 20121230 -9606 4088 SMAD3 - HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 HGNC:6769|MIM:603109|Ensembl:ENSG00000166949|HPRD:04380|HPRD:08533|Vega:OTTHUMG00000133230 15 15q22.33 SMAD family member 3 protein-coding SMAD3 SMAD family member 3 O MAD homolog 3|MAD, mothers against decapentaplegic homolog 3|SMA- and MAD-related protein 3|SMAD, mothers against DPP homolog 3|hMAD-3|hSMAD3|mad homolog JV15-2|mad protein homolog|mad3|mothers against DPP homolog 3|mothers against decapentaplegic homolog 3 20121230 -9606 4089 SMAD4 - DPC4|JIP|MADH4|MYHRS HGNC:6770|MIM:600993|Ensembl:ENSG00000141646|HPRD:02995|Vega:OTTHUMG00000132696 18 18q21.1 SMAD family member 4 protein-coding SMAD4 SMAD family member 4 O MAD homolog 4|SMAD, mothers against DPP homolog 4|deleted in pancreatic carcinoma locus 4|deletion target in pancreatic carcinoma 4|mothers against decapentaplegic homolog 4|mothers against decapentaplegic, Drosophila, homolog of, 4 20121230 -9606 4090 SMAD5 - DWFC|JV5-1|MADH5 HGNC:6771|MIM:603110|Ensembl:ENSG00000113658|HPRD:04381 5 5q31 SMAD family member 5 protein-coding SMAD5 SMAD family member 5 O MAD, mothers against decapentaplegic homolog 5|SMA- and MAD-related protein 5|SMAD, mothers against DPP homolog 5|mothers against decapentaplegic homolog 5|mothers against decapentaplegic, drosophila, homolog of, 5 20121230 -9606 4091 SMAD6 - AOVD2|HsT17432|MADH6|MADH7 HGNC:6772|MIM:602931|Ensembl:ENSG00000137834|HPRD:04240|Vega:OTTHUMG00000133218 15 15q21-q22 SMAD family member 6 protein-coding SMAD6 SMAD family member 6 O MAD homolog 6|Mothers against decapentaplegic, drosophila, homolog of, 6|SMAD 6|SMAD, mothers against DPP homolog 6|hSMAD6|mothers against DPP homolog 6|mothers against decapentaplegic homolog 6 20121230 -9606 4092 SMAD7 - CRCS3|MADH7|MADH8 HGNC:6773|MIM:602932|Ensembl:ENSG00000101665|HPRD:04241|Vega:OTTHUMG00000132655 18 18q21.1 SMAD family member 7 protein-coding SMAD7 SMAD family member 7 O MAD (mothers against decapentaplegic, Drosophila) homolog 7|MAD homolog 8|Mothers against decapentaplegic, drosophila, homolog of, 7|SMAD, mothers against DPP homolog 7|hSMAD7|mothers against DPP homolog 8|mothers against decapentaplegic homolog 7 20121230 -9606 4093 SMAD9 RP11-421P11.9 MADH6|MADH9|SMAD8|SMAD8A|SMAD8B HGNC:6774|MIM:603295|Ensembl:ENSG00000120693|Vega:OTTHUMG00000016740 13 13q12-q14 SMAD family member 9 protein-coding SMAD9 SMAD family member 9 O MAD homolog 9|Mothers against decapentaplegic, drosophila, homolog of, 9|SMAD, mothers against DPP homolog 9|mothers against decapentaplegic homolog 9 20121230 -9606 4094 MAF - CCA4|c-MAF HGNC:6776|MIM:177075|Ensembl:ENSG00000178573|HPRD:01518|Vega:OTTHUMG00000137621 16 16q22-q23 v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) protein-coding MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) O Avian musculoaponeurotic fibrosarcoma (MAF) protooncogene|T lymphocyte c-maf long form|c-maf proto-oncogene|proto-oncogene c-Maf|transcription factor Maf 20121230 -9606 4095 MAFD1 - BPAD|MD1 HGNC:6777|MIM:125480 18 18p major affective disorder 1 unknown MAFD1 major affective disorder 1 O - 20120622 -9606 4096 MAFD2 - BPAD|MDI|MDX HGNC:6778|MIM:309200 X Xq27-q28 major affective disorder 2 unknown MAFD2 major affective disorder 2 O - 20120622 -9606 4097 MAFG - hMAF HGNC:6781|MIM:602020|Ensembl:ENSG00000197063|HPRD:03605|Vega:OTTHUMG00000177958 17 17q25.3 v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) protein-coding MAFG v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) O basic leucine zipper transcription factor MafG|transcription factor MafG 20121230 -9606 4099 MAG - GMA|S-MAG|SIGLEC-4A|SIGLEC4A HGNC:6783|MIM:159460|Ensembl:ENSG00000105695|HPRD:01160 19 19q13.1 myelin associated glycoprotein protein-coding MAG myelin associated glycoprotein O myelin-associated glycoprotein|sialic acid binding Ig-like lectin 4A|sialic acid-binding immunoglobulin-like lectin 4A 20121230 -9606 4100 MAGEA1 - CT1.1|MAGE1 HGNC:6796|MIM:300016|Ensembl:ENSG00000198681|HPRD:02059|Vega:OTTHUMG00000024192 X Xq28 melanoma antigen family A, 1 (directs expression of antigen MZ2-E) protein-coding MAGEA1 melanoma antigen family A, 1 (directs expression of antigen MZ2-E) O MAGE-1 antigen|antigen MZ2-E|cancer/testis antigen 1.1|cancer/testis antigen family 1, member 1|melanoma antigen MAGE-1|melanoma antigen family A 1|melanoma-associated antigen 1|melanoma-associated antigen MZ2-E 20121230 -9606 4101 MAGEA2 - CT1.2|MAGE2|MAGEA2A HGNC:6800|MIM:300173|Ensembl:ENSG00000184750|HPRD:02165 X Xq28 melanoma antigen family A, 2 protein-coding MAGEA2 melanoma antigen family A, 2 O MAGE-2 antigen|cancer/testis antigen 1.2|cancer/testis antigen family 1, member 2|melanoma antigen 2|melanoma-associated antigen 2 20121230 -9606 4102 MAGEA3 - CT1.3|HIP8|HYPD|MAGE3|MAGEA6 HGNC:6801|MIM:300174|Ensembl:ENSG00000221867|HPRD:02166|Vega:OTTHUMG00000022640 X Xq28 melanoma antigen family A, 3 protein-coding MAGEA3 melanoma antigen family A, 3 O MAGE-3 antigen|antigen MZ2-D|cancer/testis antigen 1.3|cancer/testis antigen family 1, member 3|melanoma-associated antigen 3 20121230 -9606 4103 MAGEA4 - CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B HGNC:6802|MIM:300175|Ensembl:ENSG00000147381|HPRD:02167|Vega:OTTHUMG00000024174 X Xq28 melanoma antigen family A, 4 protein-coding MAGEA4 melanoma antigen family A, 4 O MAGE-4 antigen|MAGE-41 antigen|MAGE-X2 antigen|cancer/testis antigen 1.4|cancer/testis antigen family 1, member 4|melanoma-associated antigen 4 20121230 -9606 4104 MAGEA5 - CT1.5|MAGE5|MAGEA4 HGNC:6803|MIM:300340|Ensembl:ENSG00000242520|HPRD:02277|Vega:OTTHUMG00000160288 X Xq28 melanoma antigen family A, 5 protein-coding MAGEA5 melanoma antigen family A, 5 O MAGE-5 antigen|MAGE-5a antigen|MAGE-5b antigen|cancer/testis antigen 1.5|cancer/testis antigen family 1, member 5|melanoma-associated antigen 5 20121230 -9606 4105 MAGEA6 - CT1.6|MAGE-3b|MAGE3B|MAGE6 HGNC:6804|MIM:300176|Ensembl:ENSG00000197172|HPRD:02168|Vega:OTTHUMG00000022642 X Xq28 melanoma antigen family A, 6 protein-coding MAGEA6 melanoma antigen family A, 6 O MAGE-6 antigen|MAGE3B antigen|cancer/testis antigen 1.6|cancer/testis antigen family 1, member 6|melanoma-associated antigen 6 20121230 -9606 4106 MAGEA7P - MAGE7|MAGEA7 HGNC:6805 X Xq28 melanoma antigen family A, 7, pseudogene pseudo MAGEA7P melanoma antigen family A, 7, pseudogene O - 20121230 -9606 4107 MAGEA8 - CT1.8|MAGE8 HGNC:6806|MIM:300341|Ensembl:ENSG00000156009|HPRD:02278|Vega:OTTHUMG00000022635 X Xq28 melanoma antigen family A, 8 protein-coding MAGEA8 melanoma antigen family A, 8 O MAGE-8 antigen|cancer/testis antigen 1.8|cancer/testis antigen family 1, member 8|melanoma-associated antigen 8 20121230 -9606 4108 MAGEA9 - CT1.9|MAGE9 HGNC:6807|MIM:300342|Ensembl:ENSG00000166008|HPRD:02279|Vega:OTTHUMG00000164165 X Xq28 melanoma antigen family A, 9 protein-coding MAGEA9 melanoma antigen family A, 9 O MAGE-9 antigen|cancer/testis antigen 1.9|cancer/testis antigen family 1, member 9|melanoma-associated antigen 9 20121230 -9606 4109 MAGEA10 - CT1.10|MAGE10 HGNC:6797|MIM:300343|Ensembl:ENSG00000124260|HPRD:02280|Vega:OTTHUMG00000024180 X Xq28 melanoma antigen family A, 10 protein-coding MAGEA10 melanoma antigen family A, 10 O MAGE-10 antigen|cancer/testis antigen 1.10|cancer/testis antigen family 1, member 10|melanoma-associated antigen 10 20121230 -9606 4110 MAGEA11 - CT1.11|MAGE-11|MAGE11|MAGEA-11 HGNC:6798|MIM:300344|Ensembl:ENSG00000185247|HPRD:02281|Vega:OTTHUMG00000022633 X Xq28 melanoma antigen family A, 11 protein-coding MAGEA11 melanoma antigen family A, 11 O MAGE-11 antigen|cancer/testis antigen 1.11|cancer/testis antigen family 1, member 11|melanoma-associated antigen 11 20121230 -9606 4111 MAGEA12 - CT1.12|MAGE12 HGNC:6799|MIM:300177|Ensembl:ENSG00000213401|HPRD:02169|Vega:OTTHUMG00000022650 X Xq28 melanoma antigen family A, 12 protein-coding MAGEA12 melanoma antigen family A, 12 O MAGE-12 antigen|MAGE12F antigen|cancer/testis antigen 1.12|cancer/testis antigen family 1, member 12|melanoma-associated antigen 12 20121230 -9606 4112 MAGEB1 - CT3.1|DAM10|MAGE-Xp|MAGEL1 HGNC:6808|MIM:300097|Ensembl:ENSG00000214107|HPRD:02108|Vega:OTTHUMG00000021322 X Xp21.3 melanoma antigen family B, 1 protein-coding MAGEB1 melanoma antigen family B, 1 O DSS-AHC critical interval MAGE superfamily 10|DSS/AHC critical interval MAGE superfamily 10|MAGE-B1 antigen|MAGE-XP antigen|cancer/testis antigen 3.1|cancer/testis antigen family 3, member 1|melanoma-associated antigen B1 20121230 -9606 4113 MAGEB2 - CT3.2|DAM6|MAGE-XP-2 HGNC:6809|MIM:300098|Ensembl:ENSG00000099399|HPRD:02109|Vega:OTTHUMG00000021319 X Xp21.3 melanoma antigen family B, 2 protein-coding MAGEB2 melanoma antigen family B, 2 O DSS-AHC critical interval MAGE superfamily 6|DSS/AHC critical interval MAGE superfamily 6|MAGE XP-2 antigen|MAGE-B2 antigen|cancer/testis antigen 3.2|cancer/testis antigen family 3, member 2|melanoma-associated antigen B2 20121230 -9606 4114 MAGEB3 - CT3.5 HGNC:6810|MIM:300152|Ensembl:ENSG00000198798|HPRD:02149|Vega:OTTHUMG00000021320 X Xp21.3 melanoma antigen family B, 3 protein-coding MAGEB3 melanoma antigen family B, 3 O MAGE-B3 antigen|cancer/testis antigen family 3, member 5|melanoma-associated antigen B3 20121230 -9606 4115 MAGEB4 - CT3.6 HGNC:6811|MIM:300153|Ensembl:ENSG00000120289|HPRD:02150|Vega:OTTHUMG00000021321 X Xp21.3 melanoma antigen family B, 4 protein-coding MAGEB4 melanoma antigen family B, 4 O MAGE-B4 antigen|cancer/testis antigen family 3, member 6|melanoma-associated antigen B4 20121230 -9606 4116 MAGOH RP5-1024G6.4 MAGOH1|MAGOHA HGNC:6815|MIM:602603|Ensembl:ENSG00000162385|HPRD:04005|Vega:OTTHUMG00000008932 1 1p32.3 mago-nashi homolog, proliferation-associated (Drosophila) protein-coding MAGOH mago-nashi homolog, proliferation-associated (Drosophila) O protein mago nashi homolog 20121230 -9606 4117 MAK RP3-417M14.2 RP62|dJ417M14.2 HGNC:6816|MIM:154235|Ensembl:ENSG00000111837|HPRD:01101|Vega:OTTHUMG00000014247 6 6p24 male germ cell-associated kinase protein-coding MAK male germ cell-associated kinase O male germ cell-associated kinase retinal-enriched isoform|serine/threonine protein kinase MAK|serine/threonine-protein kinase MAK 20121230 -9606 4118 MAL - - HGNC:6817|MIM:188860|Ensembl:ENSG00000172005|HPRD:01789|Vega:OTTHUMG00000132011 2 2q11.1 mal, T-cell differentiation protein protein-coding MAL mal, T-cell differentiation protein O T-lymphocyte maturation-associated protein|myelin and lymphocyte protein 20121230 -9606 4121 MAN1A1 - HUMM3|HUMM9|MAN9 HGNC:6821|MIM:604344|Ensembl:ENSG00000111885|HPRD:05066|Vega:OTTHUMG00000015472 6 6q22 mannosidase, alpha, class 1A, member 1 protein-coding MAN1A1 mannosidase, alpha, class 1A, member 1 O Man9-mannosidase|alpha-1,2-mannosidase IA|man(9)-alpha-mannosidase|mannosyl-oligosaccharide 1,2-alpha-mannosidase IA|processing alpha-1,2-mannosidase IA 20121230 -9606 4122 MAN2A2 - MANA2X HGNC:6825|MIM:600988|Ensembl:ENSG00000196547|HPRD:02994|Vega:OTTHUMG00000172385 15 15q26.1 mannosidase, alpha, class 2A, member 2 protein-coding MAN2A2 mannosidase, alpha, class 2A, member 2 O MAN IIx|alpha-mannosidase 2x|alpha-mannosidase IIx|mannosidase, alpha type II-X|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase|manosidase, alpha-, type II, isozyme X 20121230 -9606 4123 MAN2C1 - MAN6A8|MANA|MANA1 HGNC:6827|MIM:154580|Ensembl:ENSG00000140400|HPRD:01109|Vega:OTTHUMG00000172698 15 15q11-q13 mannosidase, alpha, class 2C, member 1 protein-coding MAN2C1 mannosidase, alpha, class 2C, member 1 O alpha mannosidase 6A8B|alpha-D-mannoside mannohydrolase|alpha-mannosidase 2C1|mannosidase, alpha 6A8|mannosidase, alpha A, cytoplasmic 20121230 -9606 4124 MAN2A1 - GOLIM7|MANA2|MANII HGNC:6824|MIM:154582|Ensembl:ENSG00000112893|HPRD:01110|Vega:OTTHUMG00000162834 5 5q21-q22 mannosidase, alpha, class 2A, member 1 protein-coding MAN2A1 mannosidase, alpha, class 2A, member 1 O AMan II|Golgi alpha-mannosidase II|alpha-mannosidase 2|golgi integral membrane protein 7|man II|mannosidase, alpha type II|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase 20121230 -9606 4125 MAN2B1 - LAMAN|MANB HGNC:6826|MIM:609458|Ensembl:ENSG00000104774|HPRD:02007|Vega:OTTHUMG00000156397 19 19cen-q13.1 mannosidase, alpha, class 2B, member 1 protein-coding MAN2B1 mannosidase, alpha, class 2B, member 1 O lysosomal acid alpha-mannosidase|lysosomal alpha-mannosidase|mannosidase alpha-B|mannosidase, alpha B, lysosomal 20121230 -9606 4126 MANBA - MANB1 HGNC:6831|MIM:609489|Ensembl:ENSG00000109323|HPRD:02008|Vega:OTTHUMG00000131123 4 4q22-q25 mannosidase, beta A, lysosomal protein-coding MANBA mannosidase, beta A, lysosomal O beta-mannosidase|lysosomal beta A mannosidase|mannanase|mannase 20121230 -9606 4127 MANBB - - HGNC:6832 - - mannosidase, beta B, soluble protein-coding MANBB mannosidase, beta B, soluble O - 20080828 -9606 4128 MAOA RP1-201D17__B.2 MAO-A HGNC:6833|MIM:309850|Ensembl:ENSG00000189221|HPRD:02400|Vega:OTTHUMG00000021387 X Xp11.3 monoamine oxidase A protein-coding MAOA monoamine oxidase A O amine oxidase [flavin-containing] A|monoamine oxidase type A 20121230 -9606 4129 MAOB RP1-201D17__B.1 - HGNC:6834|MIM:309860|Ensembl:ENSG00000069535|HPRD:02401|Vega:OTTHUMG00000021388 X Xp11.23 monoamine oxidase B protein-coding MAOB monoamine oxidase B O MAO, brain|MAO, platelet|MAO-B|adrenalin oxidase|amine oxidase [flavin-containing] B|monoamine oxidase type B|tyramine oxidase 20121230 -9606 4130 MAP1A - MAP1L|MTAP1A HGNC:6835|MIM:600178|Ensembl:ENSG00000166963|HPRD:02549|Vega:OTTHUMG00000059756 15 15q15.3 microtubule-associated protein 1A protein-coding MAP1A microtubule-associated protein 1A O MAP-1A|proliferation-related protein p80 20121230 -9606 4131 MAP1B - FUTSCH|MAP5 HGNC:6836|MIM:157129|Ensembl:ENSG00000131711|HPRD:01139|Vega:OTTHUMG00000100952 5 5q13 microtubule-associated protein 1B protein-coding MAP1B microtubule-associated protein 1B O MAP-1B 20121230 -9606 4133 MAP2 - MAP2A|MAP2B|MAP2C HGNC:6839|MIM:157130|Ensembl:ENSG00000078018|HPRD:01140|Vega:OTTHUMG00000132962 2 2q34-q35 microtubule-associated protein 2 protein-coding MAP2 microtubule-associated protein 2 O MAP-2 20121230 -9606 4134 MAP4 - - HGNC:6862|MIM:157132|Ensembl:ENSG00000047849|HPRD:01141|Vega:OTTHUMG00000156828 3 3p21 microtubule-associated protein 4 protein-coding MAP4 microtubule-associated protein 4 O MAP-4 20121230 -9606 4135 MAP6 - MTAP6|N-STOP|STOP HGNC:6868|MIM:601783|Ensembl:ENSG00000171533|HPRD:15989|Vega:OTTHUMG00000165343 11 11q13.5 microtubule-associated protein 6 protein-coding MAP6 microtubule-associated protein 6 O MAP-6|stable tubule-only polypeptide 20121230 -9606 4137 MAPT - DDPAC|FTDP-17|MAPTL|MSTD|MTBT1|MTBT2|PPND|TAU HGNC:6893|MIM:157140|Ensembl:ENSG00000186868|HPRD:01142|Vega:OTTHUMG00000168833 17 17q21.1 microtubule-associated protein tau protein-coding MAPT microtubule-associated protein tau O G protein beta1/gamma2 subunit-interacting factor 1|PHF-tau|neurofibrillary tangle protein|paired helical filament-tau 20121230 -9606 4139 MARK1 - MARK|Par-1c|Par1c HGNC:6896|MIM:606511|Ensembl:ENSG00000116141|HPRD:07353|Vega:OTTHUMG00000037351 1 1q41 MAP/microtubule affinity-regulating kinase 1 protein-coding MARK1 MAP/microtubule affinity-regulating kinase 1 O PAR1 homolog c|serine/threonine-protein kinase MARK1 20121230 -9606 4140 MARK3 - CTAK1|KP78|PAR1A|Par-1a HGNC:6897|MIM:602678|Ensembl:ENSG00000075413|HPRD:04058|Vega:OTTHUMG00000171789 14 14q32.3 MAP/microtubule affinity-regulating kinase 3 protein-coding MARK3 MAP/microtubule affinity-regulating kinase 3 O C-TAK1|ELKL motif kinase 2|EMK-2|cdc25C-associated protein kinase 1|protein kinase STK10|ser/Thr protein kinase PAR-1|serine/threonine-protein kinase p78 20121230 -9606 4141 MARS - METRS|MRS|MTRNS HGNC:6898|MIM:156560|Ensembl:ENSG00000166986|HPRD:08864|Vega:OTTHUMG00000169996 12 12q13 methionyl-tRNA synthetase protein-coding MARS methionyl-tRNA synthetase O cytosolic methionyl-tRNA synthetase|methionine tRNA ligase 1, cytoplasmic|methionine--tRNA ligase, cytoplasmic 20121230 -9606 4142 MAS1 - MAS HGNC:6899|MIM:165180|Ensembl:ENSG00000130368|HPRD:01306|Vega:OTTHUMG00000015944 6 6q25.3-q26 MAS1 oncogene protein-coding MAS1 MAS1 oncogene O proto-oncogene Mas 20121230 -9606 4143 MAT1A RP11-36D19.2 MAT|MATA1|SAMS|SAMS1 HGNC:6903|MIM:610550|Ensembl:ENSG00000151224|HPRD:02013|Vega:OTTHUMG00000018613 10 10q22 methionine adenosyltransferase I, alpha protein-coding MAT1A methionine adenosyltransferase I, alpha O MAT 1|MAT-I/III|S-adenosylmethionine synthase isoform type-1|S-adenosylmethionine synthetase isoform type-1|adoMet synthase 1|adoMet synthetase 1|methionine adenosyltransferase 1|methionine adenosyltransferase I/III 20121230 -9606 4144 MAT2A - MATA2|MATII|SAMS2 HGNC:6904|MIM:601468|Ensembl:ENSG00000168906|HPRD:03275|Vega:OTTHUMG00000130174 2 2p11.2 methionine adenosyltransferase II, alpha protein-coding MAT2A methionine adenosyltransferase II, alpha O MAT 2|MAT-II|S-adenosylmethionine synthase isoform type-2|adoMet synthase 2|adoMet synthetase 2|methionine adenosyltransferase 2 20121230 -9606 4145 MATK - CHK|CTK|HHYLTK|HYL|HYLTK|Lsk HGNC:6906|MIM:600038|Ensembl:ENSG00000007264|HPRD:02496|Vega:OTTHUMG00000180916 19 19p13.3 megakaryocyte-associated tyrosine kinase protein-coding MATK megakaryocyte-associated tyrosine kinase O CSK homologous kinase|Csk-homologous kinase|Csk-type protein tyrosine kinase|HYL tyrosine kinase|hematopoietic consensus tyrosine-lacking kinase|hydroxyaryl-protein kinase|leukocyte carboxyl-terminal src kinase related|megakaryocyte-associated tyrosine-protein kinase|protein kinase HYL|tyrosine kinase MATK|tyrosine-protein kinase CTK|tyrosylprotein kinase 20121230 -9606 4146 MATN1 - CMP|CRTM HGNC:6907|MIM:115437|Ensembl:ENSG00000162510|HPRD:00276|Vega:OTTHUMG00000003705 1 1p35 matrilin 1, cartilage matrix protein protein-coding MATN1 matrilin 1, cartilage matrix protein O cartilage matrix protein 20121230 -9606 4147 MATN2 UNQ193/PRO219 - HGNC:6908|MIM:602108|Ensembl:ENSG00000132561|HPRD:03660|Vega:OTTHUMG00000164795 8 8q22 matrilin 2 protein-coding MATN2 matrilin 2 O matrilin-2 20121230 -9606 4148 MATN3 - DIPOA|EDM5|HOA|OADIP|OS2 HGNC:6909|MIM:602109|Ensembl:ENSG00000132031|HPRD:03661|Vega:OTTHUMG00000151788 2 2p24-p23 matrilin 3 protein-coding MATN3 matrilin 3 O matrilin-3 20121230 -9606 4149 MAX - bHLHd4 HGNC:6913|MIM:154950|Ensembl:ENSG00000125952|HPRD:01113|Vega:OTTHUMG00000142809 14 14q23 MYC associated factor X protein-coding MAX MYC associated factor X O class D basic helix-loop-helix protein 4|protein max 20121230 -9606 4150 MAZ - PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87 HGNC:6914|MIM:600999|Ensembl:ENSG00000103495|HPRD:02999|Vega:OTTHUMG00000132119 16 16p11.2 MYC-associated zinc finger protein (purine-binding transcription factor) protein-coding MAZ MYC-associated zinc finger protein (purine-binding transcription factor) O MAZI|myc-associated zinc finger protein|purine-binding transcription factor|serum amyloid A activating factor 1|serum amyloid A activating factor 2|transcription factor Zif87|zinc finger protein 801|zinc-finger protein, 87 kilodaltons 20121230 -9606 4151 MB RP4-569D19.7 PVALB HGNC:6915|MIM:160000|Ensembl:ENSG00000198125|HPRD:01170|Vega:OTTHUMG00000150606 22 22q13.1 myoglobin protein-coding MB myoglobin O - 20121230 -9606 4152 MBD1 - CXXC3|PCM1|RFT HGNC:6916|MIM:156535|Ensembl:ENSG00000141644|HPRD:01133|Vega:OTTHUMG00000132669 18 18q21 methyl-CpG binding domain protein 1 protein-coding MBD1 methyl-CpG binding domain protein 1 O CXXC-type zinc finger protein 3|methyl-CpG binding domain protein 1 isoform PCM1|methyl-CpG-binding domain protein 1|protein containing methyl-CpG-binding domain 1|the regulator of fibroblast growth factor 2 (FGF-2) transcription 20121230 -9606 4153 MBL2 RP11-94H3.1 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1 HGNC:6922|MIM:154545|Ensembl:ENSG00000165471|HPRD:01107|Vega:OTTHUMG00000150270 10 10q11.2 mannose-binding lectin (protein C) 2, soluble protein-coding MBL2 mannose-binding lectin (protein C) 2, soluble O collectin-1|mannan-binding lectin|mannose-binding lectin (protein C) 2, soluble (opsonic defect)|mannose-binding lectin 2, soluble (opsonic defect)|mannose-binding protein C 20121230 -9606 4154 MBNL1 - EXP|EXP35|EXP40|EXP42|MBNL HGNC:6923|MIM:606516|Ensembl:ENSG00000152601|HPRD:07355|Vega:OTTHUMG00000159163 3 3q25 muscleblind-like splicing regulator 1 protein-coding MBNL1 muscleblind-like splicing regulator 1 O muscleblind-like protein 1|triplet-expansion RNA-binding protein 20121230 -9606 4155 MBP - - HGNC:6925|MIM:159430|Ensembl:ENSG00000197971|HPRD:01158|Vega:OTTHUMG00000132874 18 18q23 myelin basic protein protein-coding MBP myelin basic protein O myelin A1 protein|myelin membrane encephalitogenic protein 20121230 -9606 4156 MBS1 - MBS HGNC:6926|MIM:157900 13 13q12.2 Moebius syndrome 1 unknown MBS1 Moebius syndrome 1 O - 20110714 -9606 4157 MC1R - CMM5|MSH-R|SHEP2 HGNC:6929|MIM:155555|Ensembl:ENSG00000258839|HPRD:01118|Vega:OTTHUMG00000171163 16 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) protein-coding MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) O MC1-R|melanocyte-stimulating hormone receptor|melanotropin receptor 20121230 -9606 4158 MC2R - ACTHR HGNC:6930|MIM:607397|Ensembl:ENSG00000185231|HPRD:06304|Vega:OTTHUMG00000131721 18 18p11.2 melanocortin 2 receptor (adrenocorticotropic hormone) protein-coding MC2R melanocortin 2 receptor (adrenocorticotropic hormone) O ACTH receptor|MC2 receptor|adrenocorticotropic hormone receptor|adrenocorticotropin receptor|corticotropin receptor 20121230 -9606 4159 MC3R - BMIQ9|MC3|MC3-R|OB20|OQTL HGNC:6931|MIM:155540|Ensembl:ENSG00000124089|HPRD:01115|Vega:OTTHUMG00000032785 20 20q13.2-q13.3 melanocortin 3 receptor protein-coding MC3R melanocortin 3 receptor O melanocortin receptor 3|obesity quantitative trait locus 20121230 -9606 4160 MC4R - - HGNC:6932|MIM:155541|Ensembl:ENSG00000166603|HPRD:01116|Vega:OTTHUMG00000132766 18 18q22 melanocortin 4 receptor protein-coding MC4R melanocortin 4 receptor O MC4-R|melanocortin receptor 4 20121230 -9606 4161 MC5R - MC2 HGNC:6933|MIM:600042|Ensembl:ENSG00000176136|HPRD:08965|Vega:OTTHUMG00000131720 18 18p11.2 melanocortin 5 receptor protein-coding MC5R melanocortin 5 receptor O melanocortin receptor 5|melanocortin-5 receptor 20121230 -9606 4162 MCAM - CD146|MUC18 HGNC:6934|MIM:155735|Ensembl:ENSG00000076706|HPRD:01120|Vega:OTTHUMG00000166197 11 11q23.3 melanoma cell adhesion molecule protein-coding MCAM melanoma cell adhesion molecule O Gicerin|S-endo 1 endothelial-associated antigen|cell surface glycoprotein MUC18|cell surface glycoprotein P1H12|melanoma adhesion molecule|melanoma-associated antigen A32|melanoma-associated antigen MUC18 20121230 -9606 4163 MCC - MCC1 HGNC:6935|MIM:159350|Ensembl:ENSG00000171444|HPRD:01157|Vega:OTTHUMG00000128804 5 5q21 mutated in colorectal cancers protein-coding MCC mutated in colorectal cancers O colorectal mutant cancer protein 20121230 -9606 4166 CHST6 - MCDC1 HGNC:6938|MIM:605294|Ensembl:ENSG00000183196|HPRD:05597|Vega:OTTHUMG00000137612 16 16q22 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 protein-coding CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 O C-GlcNAc6ST|GST4-beta|N-acetylglucosamine 6-O-sulfotransferase 5|carbohydrate sulfotransferase 6|corneal N-acetylglucosamine 6-sulfotransferase|corneal N-acetylglucosamine-6-O-sulfotransferase|galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 4-beta|glcNAc6ST-5|gn6st-5|hCGn6ST 20121230 -9606 4167 MCDR1 - CAPED|NCMD HGNC:6939|MIM:136550 6 6q14-q16.2 macular dystrophy, retinal, 1 (North Carolina type) unknown MCDR1 macular dystrophy, retinal, 1 (North Carolina type) O - 20120622 -9606 4168 MCF2 RP6-88D7.2 ARHGEF21|DBL HGNC:6940|MIM:311030|Ensembl:ENSG00000101977|HPRD:02406|Vega:OTTHUMG00000022537 X Xq27 MCF.2 cell line derived transforming sequence protein-coding MCF2 MCF.2 cell line derived transforming sequence O Oncogene MCF2 (oncogene DBL)|proto-oncogene DBL|proto-oncogene MCF-2 20121230 -9606 4169 MCKD1 - ADMCKD|ADMCKD1|MCD|MCKD HGNC:6941|MIM:174000 1 1q21 medullary cystic kidney disease 1 (autosomal dominant) unknown MCKD1 medullary cystic kidney disease 1 (autosomal dominant) O - 20120622 -9606 4170 MCL1 - BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT HGNC:6943|MIM:159552|Ensembl:ENSG00000143384|HPRD:08870|Vega:OTTHUMG00000034867 1 1q21 myeloid cell leukemia sequence 1 (BCL2-related) protein-coding MCL1 myeloid cell leukemia sequence 1 (BCL2-related) O bcl-2-like protein 3|bcl-2-related protein EAT/mcl1|induced myeloid leukemia cell differentiation protein Mcl-1|myeloid cell leukemia ES 20121230 -9606 4171 MCM2 - BM28|CCNL1|CDCL1|D3S3194|MITOTIN|cdc19 HGNC:6944|MIM:116945|Ensembl:ENSG00000073111|HPRD:00303|Vega:OTTHUMG00000159637 3 3q21 minichromosome maintenance complex component 2 protein-coding MCM2 minichromosome maintenance complex component 2 O DNA replication licensing factor MCM2|MCM2 minichromosome maintenance deficient 2, mitotin|cell devision cycle-like 1|cyclin-like 1|minichromosome maintenance deficient 2 (mitotin)|minichromosome maintenance protein 2 homolog|nuclear protein BM28 20121230 -9606 4172 MCM3 RP1-108C2.3 HCC5|P1-MCM3|P1.h|RLFB HGNC:6945|MIM:602693|Ensembl:ENSG00000112118|HPRD:04072|Vega:OTTHUMG00000014844 6 6p12 minichromosome maintenance complex component 3 protein-coding MCM3 minichromosome maintenance complex component 3 O DNA polymerase alpha holoenzyme-associated protein P1|DNA replication factor MCM3|DNA replication licensing factor MCM3|MCM3 minichromosome maintenance deficient 3|RLF subunit beta|cervical cancer proto-oncogene 5|hRlf beta subunit|minichromosome maintenance deficient 3|p102|replication licensing factor, beta subunit 20121230 -9606 4173 MCM4 - CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 HGNC:6947|MIM:602638|Ensembl:ENSG00000104738|HPRD:09094|Vega:OTTHUMG00000164205 8 8q11.2 minichromosome maintenance complex component 4 protein-coding MCM4 minichromosome maintenance complex component 4 O CDC21 homolog|DNA replication licensing factor MCM4|homolog of S. pombe cell devision cycle 21|minichromosome maintenance deficient 4 20121230 -9606 4174 MCM5 RP5-824I19__A.1 CDC46|P1-CDC46 HGNC:6948|MIM:602696|Ensembl:ENSG00000100297|HPRD:04075|Vega:OTTHUMG00000150961 22 22q13.1 minichromosome maintenance complex component 5 protein-coding MCM5 minichromosome maintenance complex component 5 O CDC46 homolog|DNA replication licensing factor MCM5|MCM5 minichromosome maintenance deficient 5, cell division cycle 46|minichromosome maintenance deficient 5 (cell division cycle 46) 20121230 -9606 4175 MCM6 - MCG40308|Mis5|P105MCM HGNC:6949|MIM:601806|Ensembl:ENSG00000076003|HPRD:03485|Vega:OTTHUMG00000131739 2 2q21 minichromosome maintenance complex component 6 protein-coding MCM6 minichromosome maintenance complex component 6 O DNA replication licensing factor MCM6|MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe)|minichromosome maintenance deficient (mis5, S. pombe) 6 20121230 -9606 4176 MCM7 - CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146 HGNC:6950|MIM:600592|Ensembl:ENSG00000166508|HPRD:01154|Vega:OTTHUMG00000154671 7 7q21.3-q22.1 minichromosome maintenance complex component 7 protein-coding MCM7 minichromosome maintenance complex component 7 O CDC47 homolog|DNA replication licensing factor MCM7|homolog of S. cerevisiae Cdc47|minichromosome maintenance deficient 7 20121230 -9606 4178 MCO - - HGNC:6952 - - microphthalmia (Los Angeles type) unknown MCO microphthalmia (Los Angeles type) O - 20121129 -9606 4179 CD46 - AHUS2|MCP|MIC10|TLX|TRA2.10 HGNC:6953|MIM:120920|Ensembl:ENSG00000117335|HPRD:00406|Vega:OTTHUMG00000036397 1 1q32 CD46 molecule, complement regulatory protein protein-coding CD46 CD46 molecule, complement regulatory protein O CD46 antigen, complement regulatory protein|antigen identified by monoclonal antibody TRA-2-10|complement membrane cofactor protein|measles virus receptor|membrane cofactor protein|membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)|trophoblast leucocyte common antigen|trophoblast leukocyte common antigen|trophoblast-lymphocyte cross-reactive antigen 20121230 -9606 4182 CD46P1 - CD46P|MCPL|MCPL1 HGNC:6959 1 1q32 CD46 molecule, complement regulatory protein pseudogene 1 pseudo CD46P1 CD46 molecule, complement regulatory protein pseudogene 1 O - 20121230 -9606 4183 MCS - MRXS4 HGNC:6961|MIM:309605 X Xq13-q22 Miles-Carpenter X-linked mental retardation syndrome unknown MCS Miles-Carpenter X-linked mental retardation syndrome O - 20120622 -9606 4184 SMCP RP1-13P20.4 HSMCSGEN1|MCS|MCSP HGNC:6962|MIM:601148|Ensembl:ENSG00000163206|HPRD:03093|Vega:OTTHUMG00000012452 1 1q21.3 sperm mitochondria-associated cysteine-rich protein protein-coding SMCP sperm mitochondria-associated cysteine-rich protein O mitochondrial capsule selenoprotein|sperm mitochondrial-associated cysteine-rich protein 20121230 -9606 4185 ADAM11 - MDC HGNC:189|MIM:155120|Ensembl:ENSG00000073670|HPRD:01114|Vega:OTTHUMG00000179038 17 17q21.3 ADAM metallopeptidase domain 11 protein-coding ADAM11 ADAM metallopeptidase domain 11 O ADAM 11|disintegrin and metalloproteinase domain-containing protein 11 20121230 -9606 4188 MDFI RP4-696P19.1 I-MF|I-mfa HGNC:6967|MIM:604971|Ensembl:ENSG00000112559|HPRD:07280|Vega:OTTHUMG00000014681 6 6p21 MyoD family inhibitor protein-coding MDFI MyoD family inhibitor O inhibitor of MyoD family a|myoD family inhibitor|myogenic repressor I-mf 20121230 -9606 4189 DNAJB9 UNQ743/PRO1471 ERdj4|MDG-1|MDG1|MST049|MSTP049 HGNC:6968|MIM:602634|Ensembl:ENSG00000128590|HPRD:07047|Vega:OTTHUMG00000154866 7 7q31|14q24.2-q24.3 DnaJ (Hsp40) homolog, subfamily B, member 9 protein-coding DNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 9 O dnaJ homolog subfamily B member 9|endoplasmic reticulum DnaJ homolog 4|microvascular endothelial differentiation gene 1 protein 20121230 -9606 4190 MDH1 - MDH-s|MDHA|MGC:1375|MOR2 HGNC:6970|MIM:154200|Ensembl:ENSG00000014641|HPRD:01100|Vega:OTTHUMG00000129512 2 2p13.3 malate dehydrogenase 1, NAD (soluble) protein-coding MDH1 malate dehydrogenase 1, NAD (soluble) O cytosolic malate dehydrogenase|diiodophenylpyruvate reductase|malate dehydrogenase, cytoplasmic|soluble malate dehydrogenase 20121230 -9606 4191 MDH2 - M-MDH|MDH|MGC:3559|MOR1 HGNC:6971|MIM:154100|Ensembl:ENSG00000146701|HPRD:01099|Vega:OTTHUMG00000023827 7 7cen-q22 malate dehydrogenase 2, NAD (mitochondrial) protein-coding MDH2 malate dehydrogenase 2, NAD (mitochondrial) O malate dehydrogenase, mitochondrial 20121230 -9606 4192 MDK - ARAP|MK|NEGF2 HGNC:6972|MIM:162096|Ensembl:ENSG00000110492|HPRD:01200|Vega:OTTHUMG00000150315 11 11p11.2 midkine (neurite growth-promoting factor 2) protein-coding MDK midkine (neurite growth-promoting factor 2) O amphiregulin-associated protein|midgestation and kidney protein|midkine|neurite outgrowth-promoting factor 2|retinoic acid inducible factor 20121230 -9606 4193 MDM2 - ACTFS|HDMX|hdm2 HGNC:6973|MIM:164785|Ensembl:ENSG00000135679|HPRD:01272|Vega:OTTHUMG00000142827 12 12q14.3-q15 Mdm2, p53 E3 ubiquitin protein ligase homolog (mouse) protein-coding MDM2 Mdm2, p53 E3 ubiquitin protein ligase homolog (mouse) O E3 ubiquitin-protein ligase Mdm2|HDM2 transcript variant MYO-1|HDM2 transcript variant MYO-18|HDM2 transcript variant MYO-20|HDM2 transcript variant MYO-24|HDM2 transcript variant MYO-25|HDM2 transcript variant MYO-26|HDM2 transcript variant MYO-32|HDM2 transcript variant MYO-4|MDM2 variant FB28|MDM2 variant FB30|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein|double minute 2, human homolog of; p53-binding protein|oncoprotein Mdm2 20121230 -9606 4194 MDM4 RP11-430C7.1 HDMX|MDMX|MRP1 HGNC:6974|MIM:602704|Ensembl:ENSG00000198625|HPRD:04082|Vega:OTTHUMG00000035877 1 1q32 Mdm4 p53 binding protein homolog (mouse) protein-coding MDM4 Mdm4 p53 binding protein homolog (mouse) O MDM4-related protein 1|Mdm4, transformed 3T3 cell double minute 4, p53 binding protein|double minute 4, human homolog of; p53-binding protein|mdm2-like p53-binding protein|protein Mdm4|protein Mdmx 20121230 -9606 4195 MDRV - NIPA2 HGNC:6978|MIM:601846 19 19p13.3 muscular dystrophy, with rimmed vacuoles unknown MDRV muscular dystrophy, with rimmed vacuoles O - 20120622 -9606 4199 ME1 - HUMNDME|MES HGNC:6983|MIM:154250|Ensembl:ENSG00000065833|HPRD:01102|Vega:OTTHUMG00000015111 6 6q12 malic enzyme 1, NADP(+)-dependent, cytosolic protein-coding ME1 malic enzyme 1, NADP(+)-dependent, cytosolic O Malic enzyme, cytoplasmic|NADP-ME|NADP-dependent malic enzyme|malate dehydrogenase|malic enzyme 1, soluble|pyruvic-malic carboxylase 20121230 -9606 4200 ME2 - ODS1 HGNC:6984|MIM:154270|Ensembl:ENSG00000082212|HPRD:01103|Vega:OTTHUMG00000132694 18 18q21 malic enzyme 2, NAD(+)-dependent, mitochondrial protein-coding ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial O NAD-ME|NAD-dependent malic enzyme, mitochondrial|malate dehydrogenase|pyruvic-malic carboxylase 20121230 -9606 4201 MEA1 - HYS|MEA HGNC:6986|MIM:143170|Ensembl:ENSG00000124733|HPRD:00885|Vega:OTTHUMG00000014717 6 6p21.3-p21.1 male-enhanced antigen 1 protein-coding MEA1 male-enhanced antigen 1 O MEA-1|Male-enhanced antigen (H-Y structural gene) 20121230 -9606 4204 MECP2 - AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT HGNC:6990|MIM:300005|Ensembl:ENSG00000169057|HPRD:02050|Vega:OTTHUMG00000024229 X Xq28 methyl CpG binding protein 2 (Rett syndrome) protein-coding MECP2 methyl CpG binding protein 2 (Rett syndrome) O meCp-2 protein|methyl-CpG-binding protein 2 20121230 -9606 4205 MEF2A - ADCAD1|RSRFC4|RSRFC9|mef2 HGNC:6993|MIM:600660|Ensembl:ENSG00000068305|HPRD:02807|Vega:OTTHUMG00000171937 15 15q26 myocyte enhancer factor 2A protein-coding MEF2A myocyte enhancer factor 2A O MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A)|myocyte-specific enhancer factor 2A|serum response factor-like protein 1 20121230 -9606 4206 MEF2AP1 RP11-215I23.3 MEF2AP HGNC:6994 1 1q24-q25 myocyte enhancer factor 2A pseudogene 1 pseudo MEF2AP1 myocyte enhancer factor 2A pseudogene 1 O - 20121230 -9606 4207 MEF2BNB-MEF2B - LOC729991-MEF2B|MEF2B HGNC:39979|Ensembl:ENSG00000064489|Ensembl:ENSG00000213999|HPRD:02808|Vega:OTTHUMG00000154572 19 19p13.11 MEF2BNB-MEF2B readthrough protein-coding MEF2BNB-MEF2B MEF2BNB-MEF2B readthrough O LOC729991-MEF2B readthrough|myocyte enhancer factor 2B 20121230 -9606 4208 MEF2C - C5DELq14.3|DEL5q14.3 HGNC:6996|MIM:600662|Ensembl:ENSG00000081189|HPRD:02809|Vega:OTTHUMG00000162634 5 5q14 myocyte enhancer factor 2C protein-coding MEF2C myocyte enhancer factor 2C O MADS box transcription enhancer factor 2, polypeptide C|myocyte-specific enhancer factor 2C 20121230 -9606 4209 MEF2D RP11-98G7.2 - HGNC:6997|MIM:600663|Ensembl:ENSG00000116604|HPRD:02810|Vega:OTTHUMG00000033095 1 1q12-q23 myocyte enhancer factor 2D protein-coding MEF2D myocyte enhancer factor 2D O MADS box transcription enhancer factor 2, polypeptide D|myocyte-specific enhancer factor 2D 20121230 -9606 4210 MEFV - FMF|MEF|TRIM20 HGNC:6998|MIM:608107|Ensembl:ENSG00000103313|HPRD:02012|Vega:OTTHUMG00000129324 16 16p13.3 Mediterranean fever protein-coding MEFV Mediterranean fever O marenostrin|pyrin 20121230 -9606 4211 MEIS1 - - HGNC:7000|MIM:601739|Ensembl:ENSG00000143995|HPRD:03442|Vega:OTTHUMG00000150714 2 2p14 Meis homeobox 1 protein-coding MEIS1 Meis homeobox 1 O Meis1, myeloid ecotropic viral integration site 1 homolog|WUGSC:H_NH0444B04.1|homeobox protein Meis1|leukemogenic homolog protein 20121230 -9606 4212 MEIS2 - HsT18361|MRG1 HGNC:7001|MIM:601740|Ensembl:ENSG00000134138|HPRD:03443|Vega:OTTHUMG00000129781 15 15q14 Meis homeobox 2 protein-coding MEIS2 Meis homeobox 2 O Meis homolog 2|Meis1, myeloid ecotropic viral integration site 1 homolog 2|Meis1-related gene 1|TALE homeobox protein Meis2|homeobox protein Meis2|meis1-related protein 1 20121230 -9606 4213 MEIS3P1 - MEIS3|MEIS4|MRG2 HGNC:7002 17 17p12 Meis homeobox 3 pseudogene 1 pseudo MEIS3P1 Meis homeobox 3 pseudogene 1 O - 20121230 -9606 4214 MAP3K1 - MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 HGNC:6848|MIM:600982|Ensembl:ENSG00000095015|Vega:OTTHUMG00000059486 5 5q11.2 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase protein-coding MAP3K1 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase O MAP/ERK kinase kinase 1|MAPK/ERK kinase kinase 1|MEK kinase 1|mitogen-activated protein kinase kinase kinase 1 20121230 -9606 4215 MAP3K3 - MAPKKK3|MEKK3 HGNC:6855|MIM:602539|Ensembl:ENSG00000198909|HPRD:03965|Vega:OTTHUMG00000178905 17 17q23.3 mitogen-activated protein kinase kinase kinase 3 protein-coding MAP3K3 mitogen-activated protein kinase kinase kinase 3 O MAP/ERK kinase kinase 3|MAPK/ERK kinase kinase 3|MEK kinase 3|MEKK 3 20121230 -9606 4216 MAP3K4 RP3-473J16.4 MAPKKK4|MEKK4|MTK1|PRO0412 HGNC:6856|MIM:602425|Ensembl:ENSG00000085511|HPRD:03886|Vega:OTTHUMG00000015968 6 6q26 mitogen-activated protein kinase kinase kinase 4 protein-coding MAP3K4 mitogen-activated protein kinase kinase kinase 4 O MAP three kinase 1|MAP/ERK kinase kinase 4|MAPK/ERK kinase kinase 4|MEK kinase 4|MEKK 4|SSK2/SSK22 MAP kinase kinase kinase, yeast, homolog of|dJ473J16.1 (mitogen-activated protein kinase kinase kinase 4)|predicted protein of HQ0412 20121230 -9606 4217 MAP3K5 RP3-325F22.4 ASK1|MAPKKK5|MEKK5 HGNC:6857|MIM:602448|Ensembl:ENSG00000197442|HPRD:03904|Vega:OTTHUMG00000015647 6 6q22.33 mitogen-activated protein kinase kinase kinase 5 protein-coding MAP3K5 mitogen-activated protein kinase kinase kinase 5 O ASK-1|MAP/ERK kinase kinase 5|MAPK/ERK kinase kinase 5|MEK kinase 5|MEKK 5|apoptosis signal regulating kinase 1|apoptosis signal-regulating kinase 1 20121230 -9606 4218 RAB8A - MEL|RAB8 HGNC:7007|MIM:165040|Ensembl:ENSG00000167461|HPRD:01296|Vega:OTTHUMG00000182238 19 19p13.1 RAB8A, member RAS oncogene family protein-coding RAB8A RAB8A, member RAS oncogene family O mel transforming oncogene (RAB8 homolog)|mel transforming oncogene (derived from cell line NK14)|mel transforming oncogene (derived from cell line NK14)- RAB8 homolog|oncogene c-mel|ras-associated protein RAB8|ras-related protein Rab-8A 20121230 -9606 4221 MEN1 - MEAI|SCG2 HGNC:7010|MIM:613733|Ensembl:ENSG00000133895|HPRD:00564|Vega:OTTHUMG00000045366 11 11q13 multiple endocrine neoplasia I protein-coding MEN1 multiple endocrine neoplasia I O menin 20121230 -9606 4222 MEOX1 - MOX1 HGNC:7013|MIM:600147|Ensembl:ENSG00000005102|HPRD:02537|Vega:OTTHUMG00000170513 17 17q21 mesenchyme homeobox 1 protein-coding MEOX1 mesenchyme homeobox 1 O homeobox protein MOX-1 20121230 -9606 4223 MEOX2 - GAX|MOX2 HGNC:7014|MIM:600535|Ensembl:ENSG00000106511|HPRD:02760|Vega:OTTHUMG00000152390 7 7p22.1-p21.3 mesenchyme homeobox 2 protein-coding MEOX2 mesenchyme homeobox 2 O growth arrest-specific homeobox|homeobox protein MOX-2 20121230 -9606 4224 MEP1A - PPHA HGNC:7015|MIM:600388|Ensembl:ENSG00000112818|HPRD:02666|Vega:OTTHUMG00000014790 6 6p12-p11 meprin A, alpha (PABA peptide hydrolase) protein-coding MEP1A meprin A, alpha (PABA peptide hydrolase) O N-benzoyl-L-tyrosyl-P-amino-benzoic acid hydrolase subunit alpha|PABA peptide hydrolase|PPH alpha|bA268F1.1 (meprin A alpha (PABA peptide hydrolase))|endopeptidase-2|meprin A subunit alpha 20121230 -9606 4225 MEP1B - - HGNC:7020|MIM:600389|Ensembl:ENSG00000141434|HPRD:02667|Vega:OTTHUMG00000179708 18 18q12.2-q12.3 meprin A, beta protein-coding MEP1B meprin A, beta O N-benzoyl-L-tyrosyl-P-amino-benzoic acid hydrolase subunit beta|N-benzoyl-L-tyrosyl-p-amino-benzoic acid hydrolase beta subunit|PABA peptide hydrolase|PPH beta|endopeptidase-2|meprin A subunit beta|meprin B 20121230 -9606 4228 MER5 - - HGNC:7023 19 19q13.3 antigen identified by monoclonal antibody 2D8 protein-coding MER5 antigen identified by monoclonal antibody 2D8 O - 20080828 -9606 4232 MEST - PEG1 HGNC:7028|MIM:601029|Ensembl:ENSG00000106484|HPRD:06776|Vega:OTTHUMG00000156661 7 7q32 mesoderm specific transcript protein-coding MEST mesoderm specific transcript O mesoderm specific transcript homolog|mesoderm-specific transcript homolog protein|paternally-expressed gene 1 protein 20121230 -9606 4233 MET - AUTS9|HGFR|RCCP2|c-Met HGNC:7029|MIM:164860|Ensembl:ENSG00000105976|HPRD:01280|Vega:OTTHUMG00000023299 7 7q31 met proto-oncogene (hepatocyte growth factor receptor) protein-coding MET met proto-oncogene (hepatocyte growth factor receptor) O HGF receptor|HGF/SF receptor|SF receptor|hepatocyte growth factor receptor|met proto-oncogene tyrosine kinase|proto-oncogene c-Met|scatter factor receptor|tyrosine-protein kinase Met 20121230 -9606 4234 METTL1 - C12orf1|TRM8|TRMT8|YDL201w HGNC:7030|MIM:604466|Ensembl:ENSG00000037897|HPRD:06834|Vega:OTTHUMG00000150143 12 12q13 methyltransferase like 1 protein-coding METTL1 methyltransferase like 1 O D1075-like gene product|methyltransferase-like 1|methyltransferase-like protein 1|tRNA (guanine(46)-N(7))-methyltransferase|tRNA (guanine-N(7)-)-methyltransferase|tRNA(m7G46)-methyltransferase 20121230 -9606 4235 MF4 - - HGNC:7031|MIM:309630 X - metacarpal 4-5 fusion unknown MF4 metacarpal 4-5 fusion O - 20110215 -9606 4236 MFAP1 - - HGNC:7032|MIM:600215|Ensembl:ENSG00000140259|HPRD:02569|Vega:OTTHUMG00000060145 15 15q15-q21 microfibrillar-associated protein 1 protein-coding MFAP1 microfibrillar-associated protein 1 O - 20121230 -9606 4237 MFAP2 RP1-37C10.2 MAGP|MAGP-1|MAGP1 HGNC:7033|MIM:156790|Ensembl:ENSG00000117122|HPRD:01137|Vega:OTTHUMG00000002290 1 1p36.1-p35 microfibrillar-associated protein 2 protein-coding MFAP2 microfibrillar-associated protein 2 O microfibril-associated glycoprotein 1 20121230 -9606 4238 MFAP3 - - HGNC:7034|MIM:600491|Ensembl:ENSG00000037749|HPRD:02731|Vega:OTTHUMG00000130149 5 5q32-q33.2 microfibrillar-associated protein 3 protein-coding MFAP3 microfibrillar-associated protein 3 O microfibril-associated glycoprotein 3 20121230 -9606 4239 MFAP4 - - HGNC:7035|MIM:600596|Ensembl:ENSG00000166482|HPRD:02789|Vega:OTTHUMG00000059585 17 17p11.2 microfibrillar-associated protein 4 protein-coding MFAP4 microfibrillar-associated protein 4 O microfibril-associated glycoprotein 4 20121230 -9606 4240 MFGE8 - BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 HGNC:7036|MIM:602281|Ensembl:ENSG00000140545|HPRD:03789|Vega:OTTHUMG00000148682 15 15q25 milk fat globule-EGF factor 8 protein protein-coding MFGE8 milk fat globule-EGF factor 8 protein O O-acetyl disialoganglioside synthase|breast epithelial antigen BA46|lactadherin|medin|sperm associated antigen 10|sperm surface protein hP47 20121230 -9606 4241 MFI2 - CD228|MAP97|MTF1 HGNC:7037|MIM:155750|Ensembl:ENSG00000163975|HPRD:01122|Vega:OTTHUMG00000155518 3 3q28-q29 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 protein-coding MFI2 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 O melanoma-associated antigen p97|melanotransferrin|membrane-bound transferrin-like protein 20121230 -9606 4242 MFNG CTA-390B3.1 - HGNC:7038|MIM:602577|Ensembl:ENSG00000100060|HPRD:03988|Vega:OTTHUMG00000150560 22 22q12 MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase O O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase|beta-1,3-N-acetylglucosaminyltransferase manic fringe 20121230 -9606 4245 MGAT1 - GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|MGAT HGNC:7044|MIM:160995|Ensembl:ENSG00000131446|HPRD:01189|Vega:OTTHUMG00000130937 5 5q35 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding MGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase O N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I|alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase|glcNAc-T I 20121230 -9606 4246 SCGB2A1 - LPHC|MGB2|UGB3 HGNC:7051|MIM:604398|Ensembl:ENSG00000124939|HPRD:05096|Vega:OTTHUMG00000167506 11 11q13 secretoglobin, family 2A, member 1 protein-coding SCGB2A1 secretoglobin, family 2A, member 1 O lacryglobin|lipophilin C|lipophilin-C|mammaglobin 2|mammaglobin B|mammaglobin-2|mammaglobin-B 20121230 -9606 4247 MGAT2 - CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2 HGNC:7045|MIM:602616|Ensembl:ENSG00000168282|HPRD:04013|Vega:OTTHUMG00000140271 14 14q21 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding MGAT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase O Beta-1,2-N-acetylglucosaminyltransferase II|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II|UDP-N-acetylglucosamine:alpha-6-D-mannoside beta-1,2-N-acetylglucosaminyltransferase II|alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase|glcNAc-T II|mannoside acetylglucosaminyltransferase 2 20121230 -9606 4248 MGAT3 RP5-1104E15.2 GNT-III|GNT3 HGNC:7046|MIM:604621|Ensembl:ENSG00000128268|HPRD:07058|Vega:OTTHUMG00000030185 22 22q13.1 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase O GlcNAc-T III|N-acetylglucosaminyltransferase III|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III|beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase 20121230 -9606 4249 MGAT5 - GNT-V|GNT-VA HGNC:7049|MIM:601774|Ensembl:ENSG00000152127|HPRD:03467|Vega:OTTHUMG00000131681 2 2q21.3 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase O N-acetylglucosaminyl-transferase V|alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A|alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase|glcNAc-T V|mannoside acetylglucosaminyltransferase 5 20121230 -9606 4250 SCGB2A2 - MGB1|UGB2 HGNC:7050|MIM:605562|Ensembl:ENSG00000110484|HPRD:05712|Vega:OTTHUMG00000167509 11 11q13 secretoglobin, family 2A, member 2 protein-coding SCGB2A2 secretoglobin, family 2A, member 2 O mammaglobin 1|mammaglobin A|mammaglobin-1|mammaglobin-A 20121230 -9606 4251 MGC1 - MGCN HGNC:7052|MIM:309300 X Xq12-q26 megalocornea 1 (X-linked) unknown MGC1 megalocornea 1 (X-linked) O - 20120622 -9606 4253 CTAGE5 - MEA6|MGEA|MGEA11|MGEA6 HGNC:7057|MIM:602132|Ensembl:ENSG00000150527|Ensembl:ENSG00000258941|HPRD:03680|Vega:OTTHUMG00000140258|Vega:OTTHUMG00000170752 14 14q13.3 CTAGE family, member 5 protein-coding CTAGE5 CTAGE family, member 5 O cutaneous T-cell lymphoma-associated antigen 5|meningioma expressed antigen 6 (coiled-coil proline-rich)|meningioma-expressed antigen 6/11|protein cTAGE-5 20121230 -9606 4254 KITLG - FPH2|KL-1|Kitl|MGF|SCF|SF|SHEP7 HGNC:6343|MIM:184745|Ensembl:ENSG00000049130|HPRD:01698|Vega:OTTHUMG00000169888 12 12q22 KIT ligand protein-coding KITLG KIT ligand O c-Kit ligand|familial progressive hyperpigmentation 2|kit ligand|mast cell growth factor|steel factor|stem cell factor 20121230 -9606 4255 MGMT RP11-109A6.1 - HGNC:7059|MIM:156569|Ensembl:ENSG00000170430|HPRD:01135|Vega:OTTHUMG00000019261 10 10q26 O-6-methylguanine-DNA methyltransferase protein-coding MGMT O-6-methylguanine-DNA methyltransferase O 6-O-methylguanine-DNA methyltransferase|O-6-methylguanine-DNA-alkyltransferase|O6-methylguanine-DNA methyltransferase|methylated-DNA--protein-cysteine methyltransferase|methylguanine-DNA methyltransferase 20121230 -9606 4256 MGP GIG36 MGLAP|NTI HGNC:7060|MIM:154870|Ensembl:ENSG00000111341|HPRD:01112|Vega:OTTHUMG00000168740 12 12p12.3 matrix Gla protein protein-coding MGP matrix Gla protein O cell growth-inhibiting gene 36 protein 20121230 -9606 4257 MGST1 - GST12|MGST|MGST-I HGNC:7061|MIM:138330|Ensembl:ENSG00000008394|HPRD:00705|Vega:OTTHUMG00000168816 12 12p12.3-p12.1 microsomal glutathione S-transferase 1 protein-coding MGST1 microsomal glutathione S-transferase 1 O glutathione S-transferase 12|microsomal GST-1|microsomal GST-I 20121230 -9606 4258 MGST2 - GST2|MGST-II HGNC:7063|MIM:601733|Ensembl:ENSG00000085871|HPRD:03436|Vega:OTTHUMG00000133382 4 4q28.3 microsomal glutathione S-transferase 2 protein-coding MGST2 microsomal glutathione S-transferase 2 O microsomal GST-2|microsomal GST-II 20121230 -9606 4259 MGST3 RP11-466F5.1 GST-III HGNC:7064|MIM:604564|Ensembl:ENSG00000143198|HPRD:05192|Vega:OTTHUMG00000034627 1 1q23 microsomal glutathione S-transferase 3 protein-coding MGST3 microsomal glutathione S-transferase 3 O microsomal GST-3|microsomal GST-III|microsomal glutathione S-transferase III 20121230 -9606 4261 CIITA - C2TA|CIITAIV|MHC2TA|NLRA HGNC:7067|MIM:600005|Ensembl:ENSG00000179583|HPRD:02475|Vega:OTTHUMG00000129753 16 16p13 class II, major histocompatibility complex, transactivator protein-coding CIITA class II, major histocompatibility complex, transactivator O MHC class II transactivator|MHC class II transactivator type III|NLR family, acid domain containing|nucleotide-binding oligomerization domain, leucine rich repeat and acid domain containing 20121230 -9606 4264 MHS2 - - HGNC:7071|MIM:154275 17 17q11.2-q24 malignant hyperthermia susceptibility 2 unknown MHS2 malignant hyperthermia susceptibility 2 O - 20120622 -9606 4265 MHS4 - - HGNC:7073|MIM:600467 3 3q13.1 malignant hyperthermia susceptibility 4 unknown MHS4 malignant hyperthermia susceptibility 4 O - 20120622 -9606 4266 MHS6 - - HGNC:7075|MIM:601888 5 5p malignant hyperthermia susceptibility 6 unknown MHS6 malignant hyperthermia susceptibility 6 O - 20120622 -9606 4267 CD99 - HBA71|MIC2|MIC2X|MIC2Y|MSK5X HGNC:7082|MIM:313470|MIM:450000|Ensembl:ENSG00000002586|HPRD:02434|HPRD:02465|Vega:OTTHUMG00000021073 X|Y Xp22.32 and Yp11.3 CD99 molecule protein-coding CD99 CD99 molecule O CD99 antigen|E2 antigen|MIC2 (monoclonal antibody 12E7)|T-cell surface glycoprotein E2|antigen identified by monoclonal 12E7, Y homolog|antigen identified by monoclonal antibodies 12E7, F21 and O13|surface antigen MIC2 20121230 -9606 4270 MIC7 - - HGNC:7088|MIM:108990 15 15q11-q22 antigen identified by monoclonal antibody 28.3.7 unknown MIC7 antigen identified by monoclonal antibody 28.3.7 O - 20080828 -9606 4273 MIC12 - - HGNC:7079|MIM:107254 15 15q11-q22 antigen identified by monoclonal antibody 30.2A8 unknown MIC12 antigen identified by monoclonal antibody 30.2A8 O - 20090625 -9606 4277 MICB DAAP-210H10.1 PERB11.2 HGNC:7091|MIM:602436|Ensembl:ENSG00000204516|HPRD:03894|Vega:OTTHUMG00000031074 6 6p21.3 MHC class I polypeptide-related sequence B protein-coding MICB MHC class I polypeptide-related sequence B O MHC class I chain-related protein B|MHC class I mic-B antigen|MHC class I-like molecule PERB11.2-IMX|MIC-B|stress inducible class I homolog 20121230 -9606 4279 MICD - PERB11.4 HGNC:7093 6 6p21.3 MHC class I polypeptide-related sequence D (pseudogene) pseudo MICD MHC class I polypeptide-related sequence D (pseudogene) O - 20121230 -9606 4280 MICE - PERB11.5|dJ377H14.7 HGNC:7094 6 6p21.3 MHC class I polypeptide-related sequence E (pseudogene) pseudo MICE MHC class I polypeptide-related sequence E (pseudogene) O - 20121230 -9606 4281 MID1 - BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY HGNC:7095|MIM:300552|Ensembl:ENSG00000101871|HPRD:02047|Vega:OTTHUMG00000021127 X Xp22 midline 1 (Opitz/BBB syndrome) protein-coding MID1 midline 1 (Opitz/BBB syndrome) O RING finger protein 59|midline 1 RING finger protein|midline-1|putative transcription factor XPRF|tripartite motif protein TRIM18|tripartite motif-containing protein 18|zinc finger on X and Y, mouse, homolog of 20121230 -9606 4282 MIF - GIF|GLIF|MMIF HGNC:7097|MIM:153620|Ensembl:ENSG00000240972|HPRD:01091|Vega:OTTHUMG00000150773 22 22q11.23 macrophage migration inhibitory factor (glycosylation-inhibiting factor) protein-coding MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) O L-dopachrome isomerase|L-dopachrome tautomerase|macrophage migration inhibitory factor|phenylpyruvate tautomerase 20121230 -9606 4283 CXCL9 - CMK|Humig|MIG|SCYB9|crg-10 HGNC:7098|MIM:601704|Ensembl:ENSG00000138755|HPRD:03416|Vega:OTTHUMG00000160889 4 4q21 chemokine (C-X-C motif) ligand 9 protein-coding CXCL9 chemokine (C-X-C motif) ligand 9 O C-X-C motif chemokine 9|gamma-interferon-induced monokine|monokine induced by gamma interferon|monokine induced by interferon-gamma|small-inducible cytokine B9 20121230 -9606 4284 MIP - AQP0|LIM1|MIP26|MP26 HGNC:7103|MIM:154050|Ensembl:ENSG00000135517|HPRD:01098|Vega:OTTHUMG00000170571 12 12q13 major intrinsic protein of lens fiber protein-coding MIP major intrinsic protein of lens fiber O aquaporin 0|lens fiber major intrinsic protein 20121230 -9606 4285 MIPEP RP11-173N17.1 HMIP|MIP HGNC:7104|MIM:602241|Ensembl:ENSG00000027001|HPRD:03761|Vega:OTTHUMG00000016573 13 13q12 mitochondrial intermediate peptidase protein-coding MIPEP mitochondrial intermediate peptidase O - 20121230 -9606 4286 MITF - CMM8|MI|WS2|WS2A|bHLHe32 HGNC:7105|MIM:156845|Ensembl:ENSG00000187098|HPRD:01138|Vega:OTTHUMG00000149921 3 3p14.2-p14.1 microphthalmia-associated transcription factor protein-coding MITF microphthalmia-associated transcription factor O class E basic helix-loop-helix protein 32 20121230 -9606 4287 ATXN3 - AT3|ATX3|JOS|MJD|MJD1|SCA3 HGNC:7106|MIM:607047|Ensembl:ENSG00000066427|HPRD:06131|Vega:OTTHUMG00000162212 14 14q21 ataxin 3 protein-coding ATXN3 ataxin 3 O Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)|Machado-Joseph disease protein 1|ataxin 3 variant h|ataxin 3 variant m|ataxin 3 variant ref|ataxin-3|josephin|olivopontocerebellar ataxia 3|spinocerebellar ataxia type 3 protein 20121230 -9606 4288 MKI67 RP11-380J17.2 KIA HGNC:7107|MIM:176741|Ensembl:ENSG00000148773|HPRD:08902|Vega:OTTHUMG00000019255 10 10q26.2 antigen identified by monoclonal antibody Ki-67 protein-coding MKI67 antigen identified by monoclonal antibody Ki-67 O antigen KI-67|proliferation-related Ki-67 antigen 20121230 -9606 4289 MKLN1 - TWA2 HGNC:7109|MIM:605623|Ensembl:ENSG00000128585|HPRD:16129|Vega:OTTHUMG00000154880 7 7q32 muskelin 1, intracellular mediator containing kelch motifs protein-coding MKLN1 muskelin 1, intracellular mediator containing kelch motifs O muskelin 20121230 -9606 4291 MLF1 - - HGNC:7125|MIM:601402|Ensembl:ENSG00000178053|HPRD:03239|Vega:OTTHUMG00000158775 3 3q25.1 myeloid leukemia factor 1 protein-coding MLF1 myeloid leukemia factor 1 O myelodysplasia-myeloid leukemia factor 1 20121230 -9606 4292 MLH1 - COCA2|FCC2|HNPCC|HNPCC2|hMLH1 HGNC:7127|MIM:120436|Ensembl:ENSG00000076242|HPRD:00390|Vega:OTTHUMG00000130797 3 3p21.3 mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) protein-coding MLH1 mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) O DNA mismatch repair protein Mlh1 20121230 -9606 4293 MAP3K9 - MEKK9|MLK1|PRKE1 HGNC:6861|MIM:600136|Ensembl:ENSG00000006432|HPRD:15965|Vega:OTTHUMG00000171249 14 14q24.2 mitogen-activated protein kinase kinase kinase 9 protein-coding MAP3K9 mitogen-activated protein kinase kinase kinase 9 O mixed lineage kinase 1 (tyr and ser/thr specificity) 20121230 -9606 4294 MAP3K10 - MEKK10|MLK2|MST HGNC:6849|MIM:600137|Ensembl:ENSG00000130758|HPRD:02533 19 19q13.2 mitogen-activated protein kinase kinase kinase 10 protein-coding MAP3K10 mitogen-activated protein kinase kinase kinase 10 O MKN28 derived nonreceptor_type serine/threonine kinase|MKN28 kinase|mixed lineage kinase 2|protein kinase MST 20121230 -9606 4295 MLN - - HGNC:7141|MIM:158270|Ensembl:ENSG00000096395|HPRD:15931|Vega:OTTHUMG00000014536 6 6p21.3 motilin protein-coding MLN motilin O prepromotilin|promotilin 20121230 -9606 4296 MAP3K11 - MEKK11|MLK-3|MLK3|PTK1|SPRK HGNC:6850|MIM:600050|Ensembl:ENSG00000173327|HPRD:02502|Vega:OTTHUMG00000166529 11 11q13.1-q13.3 mitogen-activated protein kinase kinase kinase 11 protein-coding MAP3K11 mitogen-activated protein kinase kinase kinase 11 O SH3 domain-containing proline-rich kinase|mixed lineage kinase 3|protein-tyrosine kinase PTK1|src-homology 3 domain-containing proline-rich kinase 20121230 -9606 4297 MLL hCG_1732268 ALL-1|CXXC7|HRX|HTRX1|KMT2A|MLL/GAS7|MLL1A|TET1-MLL|TRX1|WDSTS HGNC:7132|MIM:159555|Ensembl:ENSG00000118058|HPRD:01162|Vega:OTTHUMG00000166337 11 11q23 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) protein-coding MLL myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) O CDK6/MLL fusion protein|CXXC-type zinc finger protein 7|MLL-AF4 der(11) fusion protein|MLL/GAS7 fusion protein|MLL/GMPS fusion protein|histone-lysine N-methyltransferase MLL|lysine N-methyltransferase 2A|trithorax-like protein|zinc finger protein HRX 20121230 -9606 4298 MLLT1 - ENL|LTG19|YEATS1 HGNC:7134|MIM:159556|Ensembl:ENSG00000130382|HPRD:15933|Vega:OTTHUMG00000180757 19 19p13.3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 protein-coding MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 O ENL/MLL fusion|MLLT1/MLL fusion|YEATS domain-containing protein 1|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog); translocated to, 1|protein ENL 20121230 -9606 4299 AFF1 - AF4|MLLT2|PBM1 HGNC:7135|MIM:159557|Ensembl:ENSG00000172493|HPRD:08871|Vega:OTTHUMG00000130603 4 4q21 AF4/FMR2 family, member 1 protein-coding AFF1 AF4/FMR2 family, member 1 O AF4/FMR2 family member 1|ALL1-fused gene from chromosome 4 protein|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2|pre-B-cell monocytic leukemia partner 1|protein AF-4|proto-oncogene AF4 20121230 -9606 4300 MLLT3 - AF9|YEATS3 HGNC:7136|MIM:159558|Ensembl:ENSG00000171843|HPRD:01163|Vega:OTTHUMG00000019650 9 9p22 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 protein-coding MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 O ALL1-fused gene from chromosome 9 protein|YEATS domain-containing protein 3|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog); translocated to, 3|myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein|protein AF-9 20121230 -9606 4301 MLLT4 RP3-470B24.4 AF6|RP3-431P23.3 HGNC:7137|MIM:159559|Ensembl:ENSG00000130396|HPRD:01164|Vega:OTTHUMG00000016031 6 6q27 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 protein-coding MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 O ALL1-fused gene from chromosome 6 protein|afadin|protein AF-6 20121230 -9606 4302 MLLT6 - AF17 HGNC:7138|MIM:600328|Ensembl:ENSG00000108292|HPRD:08978|Vega:OTTHUMG00000133122 17 17q21 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 protein-coding MLLT6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 O ALL1-fused gene from chromosome 17 protein|Myeloid/lymphoid or mixed-lineage leukemia, translocated to, 6|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog); translocated to, 6|protein AF-17|trithorax homolog 20121230 -9606 4303 FOXO4 - AFX|AFX1|MLLT7 HGNC:7139|MIM:300033|Ensembl:ENSG00000184481|HPRD:02070|Vega:OTTHUMG00000021789 X Xq13.1 forkhead box O4 protein-coding FOXO4 forkhead box O4 O fork head domain transcription factor AFX1|forkhead box protein O4|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 7 20121230 -9606 4306 NR3C2 - MCR|MLR|MR|NR3C2VIT HGNC:7979|MIM:600983|Ensembl:ENSG00000151623|HPRD:02991|Vega:OTTHUMG00000161455 4 4q31.1 nuclear receptor subfamily 3, group C, member 2 protein-coding NR3C2 nuclear receptor subfamily 3, group C, member 2 O aldosterone receptor|mineralocorticoid receptor|mineralocorticoid receptor 1|mineralocorticoid receptor delta 20121230 -9606 4308 TRPM1 - CSNB1C|LTRPC1|MLSN1 HGNC:7146|MIM:603576|Ensembl:ENSG00000134160|HPRD:04656|Vega:OTTHUMG00000129267 15 15q13.3 transient receptor potential cation channel, subfamily M, member 1 protein-coding TRPM1 transient receptor potential cation channel, subfamily M, member 1 O long transient receptor potential channel 1|melastatin-1|transient receptor potential cation channel subfamily M member 1|transient receptor potential melastatin family 20121230 -9606 4309 MLVI2 - - MIM:157960 5 5p14 Moloney murine leukemia virus (MoMuLV) integration site 2 homolog other - - - - 20100701 -9606 4311 MME - CALLA|CD10|NEP|SFE HGNC:7154|MIM:120520|Ensembl:ENSG00000196549|HPRD:00392|Vega:OTTHUMG00000158455 3 3q25.2 membrane metallo-endopeptidase protein-coding MME membrane metallo-endopeptidase O atriopeptidase|common acute lymphocytic leukemia antigen|enkephalinase|membrane metallo-endopeptidase (neutral endopeptidase, enkephalinase)|membrane metallo-endopeptidase (neutral endopeptidase, enkephalinase, CALLA, CD10)|membrane metallo-endopeptidase variant 1|membrane metallo-endopeptidase variant 2|neprilysin|neutral endopeptidase 24.11|skin fibroblast elastase 20121230 -9606 4312 MMP1 - CLG|CLGN HGNC:7155|MIM:120353|Ensembl:ENSG00000196611|HPRD:00384|Vega:OTTHUMG00000048192 11 11q22.3 matrix metallopeptidase 1 (interstitial collagenase) protein-coding MMP1 matrix metallopeptidase 1 (interstitial collagenase) O fibroblast collagenase|interstitial collagenase|matrix metalloprotease 1|matrix metalloproteinase 1 20121230 -9606 4313 MMP2 - CLG4|CLG4A|MMP-II|MONA|TBE-1 HGNC:7166|MIM:120360|Ensembl:ENSG00000087245|HPRD:00386|Vega:OTTHUMG00000133202 16 16q13-q21 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) protein-coding MMP2 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) O 72 kDa gelatinase|72 kDa type IV collagenase|MMP-2|collagenase type IV-A|gelatinase A|matrix metalloproteinase-2|matrix metalloproteinase-II|neutrophil gelatinase 20121230 -9606 4314 MMP3 - CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 HGNC:7173|MIM:185250|Ensembl:ENSG00000149968|HPRD:01703|Vega:OTTHUMG00000048254 11 11q22.3 matrix metallopeptidase 3 (stromelysin 1, progelatinase) protein-coding MMP3 matrix metallopeptidase 3 (stromelysin 1, progelatinase) O matrix metalloproteinase 3 (stromelysin 1, progelatinase)|matrix metalloproteinase-3|proteoglycanase|stromelysin-1|transin-1 20121230 -9606 4316 MMP7 - MMP-7|MPSL1|PUMP-1 HGNC:7174|MIM:178990|Ensembl:ENSG00000137673|HPRD:01525|Vega:OTTHUMG00000048193 11 11q21-q22 matrix metallopeptidase 7 (matrilysin, uterine) protein-coding MMP7 matrix metallopeptidase 7 (matrilysin, uterine) O matrilysin|matrin|matrix metalloproteinase 7 (matrilysin, uterine)|matrix metalloproteinase-7|pump-1 protease|uterine matrilysin|uterine metalloproteinase 20121230 -9606 4317 MMP8 - CLG1|HNC|MMP-8|PMNL-CL HGNC:7175|MIM:120355|Ensembl:ENSG00000118113|HPRD:00385|Vega:OTTHUMG00000167587 11 11q22.3 matrix metallopeptidase 8 (neutrophil collagenase) protein-coding MMP8 matrix metallopeptidase 8 (neutrophil collagenase) O PMNL collagenase|matrix metalloproteinase 8 (neutrophil collagenase)|matrix metalloproteinase-8|neutrophil collagenase 20121230 -9606 4318 MMP9 - CLG4B|GELB|MANDP2|MMP-9 HGNC:7176|MIM:120361|Ensembl:ENSG00000100985|HPRD:00387|Vega:OTTHUMG00000033044 20 20q11.2-q13.1 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) protein-coding MMP9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) O 92 kDa gelatinase|92 kDa type IV collagenase|macrophage gelatinase|matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)|matrix metalloproteinase-9|type V collagenase 20121230 -9606 4319 MMP10 - SL-2|STMY2 HGNC:7156|MIM:185260|Ensembl:ENSG00000166670|HPRD:01704|Vega:OTTHUMG00000168083 11 11q22.3 matrix metallopeptidase 10 (stromelysin 2) protein-coding MMP10 matrix metallopeptidase 10 (stromelysin 2) O MMP-10|matrix metalloprotease 10|matrix metalloproteinase 10 (stromelysin 2)|matrix metalloproteinase-10|stromelysin 2|stromelysin-2|transin 2|transin-2 20121230 -9606 4320 MMP11 - SL-3|ST3|STMY3 HGNC:7157|MIM:185261|Ensembl:ENSG00000099953|HPRD:01705|Vega:OTTHUMG00000150742 22 22q11.23 matrix metallopeptidase 11 (stromelysin 3) protein-coding MMP11 matrix metallopeptidase 11 (stromelysin 3) O MMP-11|stromelysin III|stromelysin-3 20121230 -9606 4321 MMP12 - HME|ME|MME|MMP-12 HGNC:7158|MIM:601046|HPRD:03027 11 11q22.3 matrix metallopeptidase 12 (macrophage elastase) protein-coding MMP12 matrix metallopeptidase 12 (macrophage elastase) O macrophage metalloelastase|matrix metalloproteinase 12 (macrophage elastase) 20121230 -9606 4322 MMP13 - CLG3|MANDP1 HGNC:7159|MIM:600108|Ensembl:ENSG00000137745|HPRD:02522|Vega:OTTHUMG00000165850 11 11q22.3 matrix metallopeptidase 13 (collagenase 3) protein-coding MMP13 matrix metallopeptidase 13 (collagenase 3) O MMP-13|collagenase 3|matrix metalloproteinase 13 (collagenase 3) 20121230 -9606 4323 MMP14 - 1|MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1 HGNC:7160|MIM:600754|Ensembl:ENSG00000157227|HPRD:02856|Vega:OTTHUMG00000028704 14 14q11-q12 matrix metallopeptidase 14 (membrane-inserted) protein-coding MMP14 matrix metallopeptidase 14 (membrane-inserted) O matrix metalloproteinase 14 (membrane-inserted)|matrix metalloproteinase-14|membrane type 1 metalloprotease|membrane-type matrix metalloproteinase 1|membrane-type-1 matrix metalloproteinase 20121230 -9606 4324 MMP15 - MT2-MMP|MTMMP2|SMCP-2 HGNC:7161|MIM:602261|Ensembl:ENSG00000102996|HPRD:03775|Vega:OTTHUMG00000133466 16 16q13 matrix metallopeptidase 15 (membrane-inserted) protein-coding MMP15 matrix metallopeptidase 15 (membrane-inserted) O MMP-15|MT-MMP 2|MT2MMP|matrix metalloproteinase 15 (membrane-inserted)|matrix metalloproteinase-15|membrane-type matrix metalloproteinase 2|membrane-type-2 matrix metalloproteinase 20121230 -9606 4325 MMP16 - C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP HGNC:7162|MIM:602262|Ensembl:ENSG00000156103|HPRD:03776|Vega:OTTHUMG00000163769 8 8q21.3 matrix metallopeptidase 16 (membrane-inserted) protein-coding MMP16 matrix metallopeptidase 16 (membrane-inserted) O MMP-16|MT-MMP 3|MT3MMP|MTMMP3|Putative transmembrane protein C8orf57|matrix metalloproteinase-16|membrane-type matrix metalloproteinase 3|membrane-type-3 matrix metalloproteinase 20121230 -9606 4326 MMP17 - MT4-MMP HGNC:7163|MIM:602285|Ensembl:ENSG00000198598|HPRD:03793|Vega:OTTHUMG00000168050 12 12q24.3 matrix metallopeptidase 17 (membrane-inserted) protein-coding MMP17 matrix metallopeptidase 17 (membrane-inserted) O MMP-17|MT-MMP 4|MT4MMP|MTMMP4|matrix metalloproteinase 17 (membrane-inserted)|matrix metalloproteinase-17|membrane-type matrix metalloproteinase 4|membrane-type-4 matrix metalloproteinase 20121230 -9606 4327 MMP19 - MMP18|RASI-1 HGNC:7165|MIM:601807|Ensembl:ENSG00000123342|HPRD:03486|Vega:OTTHUMG00000170216 12 12q14 matrix metallopeptidase 19 protein-coding MMP19 matrix metallopeptidase 19 O MMP-18|MMP-19|matrix metalloproteinase 18|matrix metalloproteinase 19|matrix metalloproteinase RASI|matrix metalloproteinase-18|matrix metalloproteinase-19 20121230 -9606 4329 ALDH6A1 - MMSADHA|MMSDH HGNC:7179|MIM:603178|Ensembl:ENSG00000119711|HPRD:04416|Vega:OTTHUMG00000171203 14 14q24.3 aldehyde dehydrogenase 6 family, member A1 protein-coding ALDH6A1 aldehyde dehydrogenase 6 family, member A1 O aldehyde dehydrogenase family 6 member A1|malonate-semialdehyde dehydrogenase|methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial|mitochondrial acylating methylmalonate-semialdehyde dehydrogenase 20121230 -9606 4330 MN1 CTA-437G10__B.1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 HGNC:7180|MIM:156100|Ensembl:ENSG00000169184|HPRD:08862|Vega:OTTHUMG00000150975 22 22q12.1 meningioma (disrupted in balanced translocation) 1 protein-coding MN1 meningioma (disrupted in balanced translocation) 1 O meningioma (translocation balanced)|meningioma chromosome region 1|probable tumor suppressor protein MN1 20121230 -9606 4331 MNAT1 - CAP35|MAT1|RNF66|TFB3 HGNC:7181|MIM:602659|Ensembl:ENSG00000020426|HPRD:04042|Vega:OTTHUMG00000152340 14 14q23 menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) protein-coding MNAT1 menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) O CDK-activating kinase assembly factor MAT1|CDK7/cyclin-H assembly factor|RING finger protein 66|RING finger protein MAT1|cyclin G1 interacting protein|cyclin-G1-interacting protein|menage a trois 1 (CAK assembly factor) 20121230 -9606 4332 MNDA RP11-432E18.11-001 PYHIN3 HGNC:7183|MIM:159553|Ensembl:ENSG00000163563|HPRD:15932|Vega:OTTHUMG00000022776 1 1q22 myeloid cell nuclear differentiation antigen protein-coding MNDA myeloid cell nuclear differentiation antigen O - 20121230 -9606 4333 MNG1 - - HGNC:7184|MIM:138800 14 14q multinodular goitre 1 unknown MNG1 multinodular goitre 1 O - 20120622 -9606 4335 MNT - MAD6|MXD6|ROX|bHLHd3 HGNC:7188|MIM:603039|Ensembl:ENSG00000070444|HPRD:04331|Vega:OTTHUMG00000090603 17 17p13.3 MNT, MAX dimerization protein protein-coding MNT MNT, MAX dimerization protein O MAX binding protein|Max-interacting protein|class D basic helix-loop-helix protein 3|max-binding protein MNT|myc antagonist MNT 20121230 -9606 4336 MOBP - - HGNC:7189|MIM:600948|Ensembl:ENSG00000168314|HPRD:02973|Vega:OTTHUMG00000131347 3 3p22.1 myelin-associated oligodendrocyte basic protein protein-coding MOBP myelin-associated oligodendrocyte basic protein O - 20121230 -9606 4337 MOCS1 RP1-278E11.2 MIG11|MOCOD HGNC:7190|MIM:603707|Ensembl:ENSG00000124615|HPRD:04749|Vega:OTTHUMG00000014656 6 6p21.3 molybdenum cofactor synthesis 1 protein-coding MOCS1 molybdenum cofactor synthesis 1 O MOCS1A enzyme|cell migration-inducing gene 11 protein|migration-inducing gene 11 protein|molybdenum cofactor biosynthesis protein 1|molybdenum cofactor biosynthesis protein A|molybdenum cofactor synthesis-step 1 protein A-B 20121230 -9606 4338 MOCS2 - MCBPE|MOCO1|MOCO1-A|MOCO1-B|MOCS2A|MOCS2B|MPTS HGNC:7193|MIM:603708|Ensembl:ENSG00000164172|HPRD:04750|Vega:OTTHUMG00000096981 5 5q11 molybdenum cofactor synthesis 2 protein-coding MOCS2 molybdenum cofactor synthesis 2 O MPT synthase large subunit|molybdenum cofactor biosynthesis protein E|molybdenum cofactor synthesis protein 2 large subunit|molybdenum cofactor synthesis protein 2 small subunit|molybdenum cofactor synthesis protein 2A|molybdenum cofactor synthesis protein 2B|molybdopterin synthase catalytic subunit|molybdopterin synthase sulfur carrier subunit|molybdopterin-synthase large subunit|molybdopterin-synthase small subunit|sulfur carrier protein MOCS2A 20121230 -9606 4340 MOG DAQB-92E24.2 MOGIG2|NRCLP7 HGNC:7197|MIM:159465|Ensembl:ENSG00000204655|HPRD:11831|Vega:OTTHUMG00000031099 6 6p22.1 myelin oligodendrocyte glycoprotein protein-coding MOG myelin oligodendrocyte glycoprotein O MOG Ig-AluB|MOG alpha-5|myelin-oligodendrocyte glycoprotein 20121230 -9606 4342 MOS - MSV HGNC:7199|MIM:190060|Ensembl:ENSG00000172680|HPRD:01816|Vega:OTTHUMG00000164299 8 8q11 v-mos Moloney murine sarcoma viral oncogene homolog protein-coding MOS v-mos Moloney murine sarcoma viral oncogene homolog O c-mos|oncogene MOS, Moloney murine sarcoma virus|oocyte maturation factor mos|proto-oncogene c-Mos|proto-oncogene serine/threonine-protein kinase mos 20121230 -9606 4343 MOV10 RP11-426L16.2 fSAP113|gb110 HGNC:7200|MIM:610742|Ensembl:ENSG00000155363|HPRD:14732|Vega:OTTHUMG00000011906 1 1p13.2 Mov10, Moloney leukemia virus 10, homolog (mouse) protein-coding MOV10 Mov10, Moloney leukemia virus 10, homolog (mouse) O functional spliceosome-associated protein 113|moloney leukemia virus 10 protein|putative helicase MOV-10 20121230 -9606 4345 CD200 My033 MOX1|MOX2|MRC|OX-2 HGNC:7203|MIM:155970|Ensembl:ENSG00000091972|Vega:OTTHUMG00000159248 3 3q12-q13 CD200 molecule protein-coding CD200 CD200 molecule O CD200 antigen|MRC OX-2 antigen|OX-2 membrane glycoprotein|antigen identified by monoclonal antibody MRC OX-2 20121230 -9606 4350 MPG Z69720.1-002 AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg HGNC:7211|MIM:156565|Ensembl:ENSG00000103152|HPRD:06766|Vega:OTTHUMG00000047887 16 16p13.3 N-methylpurine-DNA glycosylase protein-coding MPG N-methylpurine-DNA glycosylase O 3' end of the Mid1 gene, localized 68 kb upstream the humanzeta globin gene on 16p|3-alkyladenine DNA glycosylase|3-methyladenine DNA glycosidase|CRA36.1 (3-methyl-adenine DNA glycosylase)|DNA-3-methyladenine glycosylase|N-methylpurine-DNA glycosylase, MPG|proliferation-inducing protein 11|proliferation-inducing protein 16 20121230 -9606 4351 MPI - CDG1B|PMI|PMI1 HGNC:7216|MIM:154550|Ensembl:ENSG00000178802|HPRD:01108|Vega:OTTHUMG00000142826 15 15q22-qter mannose phosphate isomerase protein-coding MPI mannose phosphate isomerase O mannose-6- phosphate isomerase|mannose-6-phosphate isomerase|phosphohexomutase|phosphomannose isomerase 1 20121230 -9606 4352 MPL RP1-92O14.1 C-MPL|CD110|MPLV|THCYT2|TPOR HGNC:7217|MIM:159530|Ensembl:ENSG00000117400|HPRD:01161|Vega:OTTHUMG00000007429 1 1p34 myeloproliferative leukemia virus oncogene protein-coding MPL myeloproliferative leukemia virus oncogene O TPO-R|myeloproliferative leukemia protein|proto-oncogene c-Mpl|thrombopoietin receptor 20121230 -9606 4353 MPO - - HGNC:7218|MIM:606989|Ensembl:ENSG00000005381|HPRD:06102|Vega:OTTHUMG00000178922 17 17q23.1 myeloperoxidase protein-coding MPO myeloperoxidase O - 20121230 -9606 4354 MPP1 - AAG12|DXS552E|EMP55|MRG1|PEMP HGNC:7219|MIM:305360|Ensembl:ENSG00000130830|HPRD:02370|Vega:OTTHUMG00000024244 X Xq28 membrane protein, palmitoylated 1, 55kDa protein-coding MPP1 membrane protein, palmitoylated 1, 55kDa O 55 kDa erythrocyte membrane protein|aging-associated gene 12|erythrocyte membrane protein p55|migration-related gene 1|p55|palmitoylated erythrocyte membrane protein 20121230 -9606 4355 MPP2 - DLG2 HGNC:7220|MIM:600723|Ensembl:ENSG00000108852|HPRD:02837|Vega:OTTHUMG00000133840 17 17q12-q21 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) protein-coding MPP2 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) O MAGUK p55 subfamily member 2|discs large homolog 2|discs large, homolog 2 20121230 -9606 4356 MPP3 - DLG3 HGNC:7221|MIM:601114|Ensembl:ENSG00000161647|HPRD:03069|Vega:OTTHUMG00000133838 17 17q21.31 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) protein-coding MPP3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) O MAGUK p55 subfamily member 3|discs large homolog 3|discs, large homolog 3|membrane protein palmitoylated 3 20121230 -9606 4357 MPST LL22NC01-146D10.4 MST|TST2 HGNC:7223|MIM:602496|Ensembl:ENSG00000128309|HPRD:11896|Vega:OTTHUMG00000150543 22 22q13.1 mercaptopyruvate sulfurtransferase protein-coding MPST mercaptopyruvate sulfurtransferase O 3-mercaptopyruvate sulfurtransferase|human liver rhodanese 20121230 -9606 4358 MPV17 - MTDPS6|SYM1 HGNC:7224|MIM:137960|Ensembl:ENSG00000115204|HPRD:08847|Vega:OTTHUMG00000097074 2 2p23.3 MpV17 mitochondrial inner membrane protein protein-coding MPV17 MpV17 mitochondrial inner membrane protein O Mpv17, human homolog of glomerulosclerosis and nephrotic syndrome|protein Mpv17 20121230 -9606 4359 MPZ - CHM|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0 HGNC:7225|MIM:159440|Ensembl:ENSG00000158887|HPRD:01159|Vega:OTTHUMG00000034341 1 1q23.3 myelin protein zero protein-coding MPZ myelin protein zero O Charcot-Marie-Tooth neuropathy 1B|myelin peripheral protein|myelin protein P0 20121230 -9606 4360 MRC1 RP11-457D2.1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1 HGNC:7228|MIM:153618|Ensembl:ENSG00000120586|HPRD:01089|Vega:OTTHUMG00000017757 10 10p12.33 mannose receptor, C type 1 protein-coding MRC1 mannose receptor, C type 1 O C-type lectin domain family 13 member D|macrophage mannose receptor 1|macrophage mannose receptor 1-like protein 1|mannose receptor, C type 1-like 1 20121230 -9606 4361 MRE11A - ATLD|HNGS1|MRE11|MRE11B HGNC:7230|MIM:600814|Ensembl:ENSG00000020922|HPRD:02889|Vega:OTTHUMG00000167780 11 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) protein-coding MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae) O AT-like disease|DNA recombination and repair protein|MRE11 homolog 1|MRE11 homolog A|double-strand break repair protein MRE11A|endo/exonuclease Mre11|meiotic recombination 11 homolog 1|meiotic recombination 11 homolog A 20121230 -9606 4362 MRE11B - hMRE11B HGNC:7231 3 3q25 MRE11 meiotic recombination 11 homolog B (S. cerevisiae) pseudo MRE11B MRE11 meiotic recombination 11 homolog B (S. cerevisiae) O - 20121230 -9606 4363 ABCC1 - ABC29|ABCC|GS-X|MRP|MRP1 HGNC:51|MIM:158343|Ensembl:ENSG00000103222|HPRD:01153|Vega:OTTHUMG00000048267 16 16p13.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 O ATP-binding cassette transporter variant ABCC1delta-ex13|ATP-binding cassette transporter variant ABCC1delta-ex13&14|ATP-binding cassette transporter variant ABCC1delta-ex25|ATP-binding cassette transporter variant ABCC1delta-ex25&26|LTC4 transporter|leukotriene C(4) transporter|multidrug resistance-associated protein 1 20121230 -9606 4364 MRSD - CHRS HGNC:7236|MIM:309620 X Xq27-q28 mental retardation-skeletal dysplasia unknown MRSD mental retardation-skeletal dysplasia O - 20120622 -9606 4365 MRX1 - - HGNC:7238|MIM:309530 X Xp11-q13 mental retardation, X-linked 1 (non-dysmorphic) unknown MRX1 mental retardation, X-linked 1 (non-dysmorphic) O - 20120622 -9606 4366 MRX4 - - HGNC:7271 X Xq13 mental retardation, X-linked 4 unknown MRX4 mental retardation, X-linked 4 O - 20110215 -9606 4367 MRX2 - - HGNC:7249|MIM:300428 X Xp22.3-p22.2 mental retardation, X-linked 2 (non-dysmorphic) unknown MRX2 mental retardation, X-linked 2 (non-dysmorphic) O - 20120622 -9606 4368 MRX3 - - HGNC:7260 X Xq28 mental retardation, X-linked 3 unknown MRX3 mental retardation, X-linked 3 O - 20110215 -9606 4369 MRX5 - - HGNC:7282 X Xp mental retardation, X-linked 5 unknown MRX5 mental retardation, X-linked 5 O - 20110215 -9606 4370 MRX6 - - HGNC:7293 X Xq mental retardation, X-linked 6 (Okinawa type) unknown MRX6 mental retardation, X-linked 6 (Okinawa type) O - 20110215 -9606 4371 MRX7 - - HGNC:7304 X Xp11.23-q12 mental retardation, X-linked 7 unknown MRX7 mental retardation, X-linked 7 O - 20110702 -9606 4372 MRX8 - - HGNC:7311 X Xq21 mental retardation, X-linked 8 unknown MRX8 mental retardation, X-linked 8 O - 20110215 -9606 4375 MRX11 - - HGNC:7240 X - mental retardation, X-linked 11 unknown MRX11 mental retardation, X-linked 11 O - 20110215 -9606 4376 MRX12 - - HGNC:7241 X - mental retardation, X-linked 12 unknown MRX12 mental retardation, X-linked 12 O - 20110215 -9606 4377 MRX13 - - HGNC:7242 X - mental retardation, X-linked 13 unknown MRX13 mental retardation, X-linked 13 O - 20110215 -9606 4378 MRX14 - - HGNC:7243|MIM:300062 X Xp11.3-q13.3 mental retardation, X-linked 14 unknown MRX14 mental retardation, X-linked 14 O - 20120622 -9606 4379 MRX15 - - HGNC:7244 X Xp21.1-p11.22 mental retardation, X-linked 15 unknown MRX15 mental retardation, X-linked 15 O - 20110215 -9606 4381 MRX17 - - HGNC:7246 X - mental retardation, X-linked 17 unknown MRX17 mental retardation, X-linked 17 O - 20110215 -9606 4382 MRX18 - - HGNC:7247 X - mental retardation, X-linked 18 unknown MRX18 mental retardation, X-linked 18 O - 20110215 -9606 4384 MRX20 - - HGNC:7250|MIM:300047 X Xp11-q21 mental retardation, X-linked 20 unknown MRX20 mental retardation, X-linked 20 O - 20120622 -9606 4387 MRX23 - - HGNC:7253|MIM:300046 X Xq23-q24 mental retardation, X-linked 23 unknown MRX23 mental retardation, X-linked 23 O - 20120622 -9606 4388 MRX24 - - HGNC:7254 X Xp22.3-p22.2 mental retardation, X-linked 24 unknown MRX24 mental retardation, X-linked 24 O - 20110215 -9606 4389 MRX25 - - HGNC:7255 X Xq28 mental retardation, X-linked 25 unknown MRX25 mental retardation, X-linked 25 O - 20110215 -9606 4390 MRX26 - - HGNC:7256 X Xp11.4-q12 mental retardation, X-linked 26 unknown MRX26 mental retardation, X-linked 26 O - 20110215 -9606 4391 MRX27 - - HGNC:7257 X Xq24-q26 mental retardation, X-linked 27 unknown MRX27 mental retardation, X-linked 27 O - 20110215 -9606 4392 MRX28 - - HGNC:7258 X Xq28 mental retardation, X-linked 28 unknown MRX28 mental retardation, X-linked 28 O - 20110215 -9606 4395 MRX31 - - HGNC:7262 X Xp11.23-q13.3 mental retardation, X-linked 31 unknown MRX31 mental retardation, X-linked 31 O - 20110215 -9606 4397 MS - MS1 HGNC:7314|MIM:126200 - - multiple sclerosis unknown MS multiple sclerosis O - 20110714 -9606 4400 MRX35 - - HGNC:7266 X Xq22-q26 mental retardation, X-linked 35 unknown MRX35 mental retardation, X-linked 35 O - 20110215 -9606 4402 MRX37 - - HGNC:7268 X Xp22.32-p22.31 mental retardation, X-linked 37 unknown MRX37 mental retardation, X-linked 37 O - 20110702 -9606 4404 MRX39 - - HGNC:7270 X - mental retardation, X-linked 39 unknown MRX39 mental retardation, X-linked 39 O - 20110215 -9606 4405 MRX40 - - HGNC:7272 X Xq21.1 mental retardation, X-linked 40 unknown MRX40 mental retardation, X-linked 40 O - 20110215 -9606 4406 MRX42 - - HGNC:7274|MIM:300372 X - mental retardation, X-linked 42 unknown MRX42 mental retardation, X-linked 42 O - 20120622 -9606 4412 MRX49 - - HGNC:7281|MIM:300114 X Xp22.3-p22.2 mental retardation, X-linked 49 unknown MRX49 mental retardation, X-linked 49 O - 20120622 -9606 4413 MRX50 - - HGNC:7283|MIM:300115 X Xp11.3-p11.21 mental retardation, X-linked 50 unknown MRX50 mental retardation, X-linked 50 O - 20120622 -9606 4414 MRX51 - - HGNC:7284 X Xp11.3-p11.23 mental retardation, X-linked 51 unknown MRX51 mental retardation, X-linked 51 O - 20110215 -9606 4415 MRX52 - - HGNC:7285|MIM:300504 X Xp11.21-q21.33 mental retardation, X-linked 52 unknown MRX52 mental retardation, X-linked 52 O - 20120622 -9606 4416 MRX53 - - HGNC:7286|MIM:300324 X Xq22.2-q24 mental retardation, X-linked 53 unknown MRX53 mental retardation, X-linked 53 O - 20120622 -9606 4419 MRX56 - - HGNC:7289 X - mental retardation, X-linked 56 unknown MRX56 mental retardation, X-linked 56 O - 20110215 -9606 4420 MRX57 - - HGNC:7290 X - mental retardation, X-linked 57 unknown MRX57 mental retardation, X-linked 57 O - 20110215 -9606 4424 MRX61 - - HGNC:7295 X - mental retardation, X-linked 61 unknown MRX61 mental retardation, X-linked 61 O - 20110215 -9606 4425 MRX62 - - HGNC:7296 X - mental retardation, X-linked 62 unknown MRX62 mental retardation, X-linked 62 O - 20110215 -9606 4427 MRX64 - - HGNC:7298 X Xq28 mental retardation, X-linked 64 unknown MRX64 mental retardation, X-linked 64 O - 20110215 -9606 4428 MRX65 - - HGNC:7299 X Xp11.3-Xq21.33 mental retardation, X-linked 65 unknown MRX65 mental retardation, X-linked 65 O - 20110215 -9606 4429 MRXS7 - - HGNC:7313|MIM:300218 X Xp11.3-Xq22.1 mental retardation, X-linked, syndromic 7 unknown MRXS7 mental retardation, X-linked, syndromic 7 O - 20120622 -9606 4430 MYO1B - myr1 HGNC:7596|MIM:606537|Ensembl:ENSG00000128641|HPRD:08407|Vega:OTTHUMG00000132718 2 2q12-q34 myosin IB protein-coding MYO1B myosin IB O MMI-alpha|MMIa|MYH-1c|MYO1B variant protein|myosin I alpha|myosin-I alpha|myosin-Ib|unconventional myosin-Ib 20121230 -9606 4431 MSBP1 - - HGNC:7318 - - minisatellite binding protein 1 protein-coding MSBP1 minisatellite binding protein 1 O - 20120420 -9606 4432 MSBP2 - - HGNC:7319 - - minisatellite binding protein 2, 77kDa protein-coding MSBP2 minisatellite binding protein 2, 77kDa O - 20090811 -9606 4434 MSD - - HGNC:7322|MIM:311400 X - microcephaly with spastic diplegia (Paine syndrome) unknown MSD microcephaly with spastic diplegia (Paine syndrome) O - 20110215 -9606 4435 CITED1 - MSG1 HGNC:1986|MIM:300149|Ensembl:ENSG00000125931|HPRD:02146|Vega:OTTHUMG00000021812 X Xq13.1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 protein-coding CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 O cbp/p300-interacting transactivator 1|melanocyte-specific gene 1|melanocyte-specific protein 1 20121230 -9606 4436 MSH2 - COCA1|FCC1|HNPCC|HNPCC1|LCFS2 HGNC:7325|MIM:609309|Ensembl:ENSG00000095002|HPRD:00389|Vega:OTTHUMG00000128861 2 2p21 mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) protein-coding MSH2 mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) O DNA mismatch repair protein Msh2|hMSH2 20121230 -9606 4437 MSH3 - DUP|MRP1 HGNC:7326|MIM:600887|Ensembl:ENSG00000113318|HPRD:02931|Vega:OTTHUMG00000162540 5 5q11-q12 mutS homolog 3 (E. coli) protein-coding MSH3 mutS homolog 3 (E. coli) O DNA mismatch repair protein Msh3|divergent upstream protein|hMSH3|mismatch repair protein 1 20121230 -9606 4438 MSH4 RP11-262K24.2 - HGNC:7327|MIM:602105|Ensembl:ENSG00000057468|HPRD:03658|Vega:OTTHUMG00000009788 1 1p31 mutS homolog 4 (E. coli) protein-coding MSH4 mutS homolog 4 (E. coli) O hMSH4|mutS protein homolog 4 20121230 -9606 4439 MSH5 DAAP-21F2.10-001 G7|MUTSH5|NG23 HGNC:7328|MIM:603382|Ensembl:ENSG00000204410|Ensembl:ENSG00000255152|HPRD:04544|Vega:OTTHUMG00000031139|Vega:OTTHUMG00000167551 6 6p21.3 mutS homolog 5 (E. coli) protein-coding MSH5 mutS homolog 5 (E. coli) O mutS protein homolog 5 20121230 -9606 4440 MSI1 - - HGNC:7330|MIM:603328|Ensembl:ENSG00000135097|HPRD:04509|Vega:OTTHUMG00000169344 12 12q24 musashi RNA-binding protein 1 protein-coding MSI1 musashi RNA-binding protein 1 O RNA-binding protein Musashi homolog 1|musashi-1|musashi1 20121230 -9606 4447 MSK9 - - HGNC:7369 3 3pter-p14 antigen identified by monoclonal antibody K15 protein-coding MSK9 antigen identified by monoclonal antibody K15 O - 20080828 -9606 4448 MSK10 - - HGNC:7332 3 3pter-p14 antigen identified by monoclonal antibody AJ425 protein-coding MSK10 antigen identified by monoclonal antibody AJ425 O - 20080828 -9606 4467 MSK32 - - HGNC:7356 3 3pter-p14 antigen identified by monoclonal antibody K66 protein-coding MSK32 antigen identified by monoclonal antibody K66 O - 20080828 -9606 4473 MSK38 - - HGNC:7362 20 - antigen identified by monoclonal antibody O5 protein-coding MSK38 antigen identified by monoclonal antibody O5 O - 20080828 -9606 4477 MSMB RP11-481A12.1 HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 HGNC:7372|MIM:157145|Ensembl:ENSG00000138294|HPRD:01143|Vega:OTTHUMG00000018212 10 10q11.2 microseminoprotein, beta- protein-coding MSMB microseminoprotein, beta- O beta-microseminoprotein|immunoglobulin binding factor|prostate secreted seminal plasma protein|prostate secretory protein of 94 amino acids|seminal plasma beta-inhibin 20121230 -9606 4478 MSN - - HGNC:7373|MIM:309845|Ensembl:ENSG00000147065|HPRD:02399|Vega:OTTHUMG00000021723 X Xq11.1 moesin protein-coding MSN moesin O membrane-organizing extension spike protein 20121230 -9606 4479 MSNP1 - MSNL1 HGNC:7374 5 5p14.1 moesin pseudogene 1 pseudo MSNP1 moesin pseudogene 1 O - 20121230 -9606 4481 MSR1 - CD204|SCARA1|SR-A|SRA|phSR1|phSR2 HGNC:7376|MIM:153622|Ensembl:ENSG00000038945|HPRD:01092|Vega:OTTHUMG00000094809 8 8p22 macrophage scavenger receptor 1 protein-coding MSR1 macrophage scavenger receptor 1 O macrophage acetylated LDL receptor I and II|macrophage scavenger receptor type III|macrophage scavenger receptor types I and II|scavenger receptor class A member 1|scavenger receptor class A, member 1 20121230 -9606 4482 MSRA - PMSR HGNC:7377|MIM:601250|Ensembl:ENSG00000175806|HPRD:03152|Vega:OTTHUMG00000090517 8 8p23.1 methionine sulfoxide reductase A protein-coding MSRA methionine sulfoxide reductase A O cytosolic methionine-S-sulfoxide reductase|mitochondrial peptide methionine sulfoxide reductase|peptide Met(O) reductase|peptide met (O) reductase|peptide methionine sulfoxide reductase|peptide-methionine (S)-S-oxide reductase|protein-methionine-S-oxide reductase 20121230 -9606 4484 MSSE - ESS1 HGNC:7379|MIM:132800 9 9q22.32 multiple self-healing squamous epithelioma unknown MSSE multiple self-healing squamous epithelioma O - 20120622 -9606 4485 MST1 - D3F15S2|DNF15S2|HGFL|MSP|NF15S2 HGNC:7380|MIM:142408|Ensembl:ENSG00000173531|HPRD:00798|Vega:OTTHUMG00000155918 3 3p21 macrophage stimulating 1 (hepatocyte growth factor-like) protein-coding MST1 macrophage stimulating 1 (hepatocyte growth factor-like) O hepatocyte growth factor-like protein|hepatocyte growth factor-like protein homolog|macrophage-stimulating protein 20121230 -9606 4486 MST1R - CD136|CDw136|PTK8|RON HGNC:7381|MIM:600168|Ensembl:ENSG00000164078|HPRD:02545|Vega:OTTHUMG00000156709 3 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) protein-coding MST1R macrophage stimulating 1 receptor (c-met-related tyrosine kinase) O MSP receptor|MST1R variant RON30|MST1R variant RON62|PTK8 protein tyrosine kinase 8|RON variant 21|RON variant E2E3|c-met-related tyrosine kinase|macrophage-stimulating protein receptor|p185-Ron|soluble RON variant 1|soluble RON variant 2|soluble RON variant 3|soluble RON variant 4 20121230 -9606 4487 MSX1 - ECTD3|HOX7|HYD1|STHAG1 HGNC:7391|MIM:142983|Ensembl:ENSG00000163132|HPRD:00866|Vega:OTTHUMG00000090335 4 4p16.2 msh homeobox 1 protein-coding MSX1 msh homeobox 1 O homeobox 7|homeobox protein Hox-7|homeobox protein MSX-1|msh homeo box 1|msh homeobox 1-like protein|msh homeobox homolog 1 20121230 -9606 4488 MSX2 - CRS2|FPP|HOX8|MSH|PFM|PFM1 HGNC:7392|MIM:123101|Ensembl:ENSG00000120149|HPRD:00421|Vega:OTTHUMG00000130556 5 5q35.2 msh homeobox 2 protein-coding MSX2 msh homeobox 2 O homeobox protein Hox-8|homeobox protein MSX-2|msh homeo box 2|msh homeobox homolog 2 20121230 -9606 4489 MT1A - MT1|MT1S|MTC HGNC:7393|MIM:156350|Ensembl:ENSG00000205362|HPRD:07035|Vega:OTTHUMG00000176919 16 16q13 metallothionein 1A protein-coding MT1A metallothionein 1A O MT-1A|MT-IA|metallothionein 1A (functional)|metallothionein 1S|metallothionein-1A|metallothionein-IA 20121230 -9606 4490 MT1B - MT1|MT1Q|MTP HGNC:7394|MIM:156349|Ensembl:ENSG00000169688|HPRD:11826|Vega:OTTHUMG00000133277 16 16q13 metallothionein 1B protein-coding MT1B metallothionein 1B O MT-1B|MT-IB|metallothionein 1B (functional)|metallothionein 1Q|metallothionein-1B|metallothionein-IB 20121230 -9606 4493 MT1E - MT1|MTD HGNC:7397|MIM:156351|Ensembl:ENSG00000169715|HPRD:01126|Vega:OTTHUMG00000133014 16 16q13 metallothionein 1E protein-coding MT1E metallothionein 1E O MT-1E|MT-IE|metallothionein 1E (functional)|metallothionein D|metallothionein-1E|metallothionein-IE 20121230 -9606 4494 MT1F PRO0376 MT1 HGNC:7398|MIM:156352|Ensembl:ENSG00000198417|HPRD:01127|Vega:OTTHUMG00000176838 16 16q13 metallothionein 1F protein-coding MT1F metallothionein 1F O MT-1F|MT-IF|metallothionein 1F (functional)|metallothionein-1F|metallothionein-IF 20121230 -9606 4495 MT1G - MT1|MT1K HGNC:7399|MIM:156353|Ensembl:ENSG00000125144|HPRD:11827|Vega:OTTHUMG00000133275 16 16q13 metallothionein 1G protein-coding MT1G metallothionein 1G O MT-1G|MT-1K|MT-IG|metallothionein 1K|metallothionein-1G|metallothionein-1K|metallothionein-IG 20121230 -9606 4496 MT1H - MT-0|MT-1H|MT-IH|MT1 HGNC:7400|MIM:156354|Ensembl:ENSG00000205358|HPRD:01128|Vega:OTTHUMG00000133283 16 16q13 metallothionein 1H protein-coding MT1H metallothionein 1H O metallothionein-0|metallothionein-1H|metallothionein-IH 20121230 -9606 4498 MT1JP - MT1|MT1J|MT1NP|MTB HGNC:7402|MIM:156356|HPRD:11758 16 16q13 metallothionein 1J, pseudogene pseudo MT1JP metallothionein 1J, pseudogene O - 20121230 -9606 4499 MT1M - MT-1M|MT-IM|MT1|MT1K HGNC:14296|MIM:156357|Ensembl:ENSG00000205364|HPRD:01129|Vega:OTTHUMG00000176938 16 16q13 metallothionein 1M protein-coding MT1M metallothionein 1M O metallothionein 1K|metallothionein 1Y|metallothionein-1M 20121230 -9606 4500 MT1L - MT1|MT1R|MTF HGNC:7404|MIM:156358 16 16q13 metallothionein 1L (gene/pseudogene) pseudo MT1L metallothionein 1L (gene/pseudogene) O - 20121230 -9606 4501 MT1X - MT-1l|MT1 HGNC:7405|MIM:156359|Ensembl:ENSG00000187193|HPRD:01130|Vega:OTTHUMG00000133280 16 16q13 metallothionein 1X protein-coding MT1X metallothionein 1X O MT-1X|MT-IX|metallothionein-1X|metallothionein-IX 20121230 -9606 4502 MT2A - MT2 HGNC:7406|MIM:156360|Ensembl:ENSG00000125148|HPRD:08863|Vega:OTTHUMG00000133281 16 16q13 metallothionein 2A protein-coding MT2A metallothionein 2A O MT-2|MT-II|metallothionein-2|metallothionein-2A|metallothionein-II 20121230 -9606 4503 MT2P1 - - HGNC:7407 4 4q13.2 metallothionein 2 pseudogene 1 pseudo MT2P1 metallothionein 2 pseudogene 1 O - 20121230 -9606 4504 MT3 - GIF|GIFB|GRIF|ZnMT3 HGNC:7408|MIM:139255|Ensembl:ENSG00000087250|HPRD:00752|Vega:OTTHUMG00000133282 16 16q13 metallothionein 3 protein-coding MT3 metallothionein 3 O MT-3|MT-III|growth inhibitory factor|metallothionein 3 (growth inhibitory factor (neurotrophic))|metallothionein-3|metallothionein-III 20121230 -9606 4507 MTAP - BDMF|DMSFH|DMSMFH|LGMBF|MSAP|c86fus HGNC:7413|MIM:156540|Ensembl:ENSG00000099810|HPRD:01134|Vega:OTTHUMG00000019690 9 9p21 methylthioadenosine phosphorylase protein-coding MTAP methylthioadenosine phosphorylase O 5'-methylthioadenosine phosphorylase|MTA phosphorylase|MTAPase|MeSAdo phosphorylase|S-methyl-5'-thioadenosine phosphorylase 20121230 -9606 4508 ATP6 - ATPase6|MTATP6 HGNC:7414|MIM:516060 MT - ATP synthase F0 subunit 6 protein-coding MT-ATP6 mitochondrially encoded ATP synthase 6 O - 20121222 -9606 4509 ATP8 - ATPase8|MTATP8 HGNC:7415|MIM:516070 MT - ATP synthase F0 subunit 8 protein-coding MT-ATP8 mitochondrially encoded ATP synthase 8 O - 20121222 -9606 4511 TRNC - MTTC HGNC:7477|MIM:590020 MT - tRNA tRNA MT-TC mitochondrially encoded tRNA cysteine O - 20121119 -9606 4512 COX1 - COI|MTCO1 HGNC:7419|MIM:516030 MT - cytochrome c oxidase subunit I protein-coding MT-COI mitochondrially encoded cytochrome c oxidase I O - 20121222 -9606 4513 COX2 - COII|MTCO2 HGNC:7421|MIM:516040 MT - cytochrome c oxidase subunit II protein-coding MT-CO2 mitochondrially encoded cytochrome c oxidase II O - 20121222 -9606 4514 COX3 - COIII|MTCO3 HGNC:7422|MIM:516050 MT - cytochrome c oxidase III protein-coding MT-CO3 mitochondrially encoded cytochrome c oxidase III O cytochrome c oxidase subunit III 20121222 -9606 4515 MTCP1 GS1-273L24.4 P13MTCP1|p8MTCP1 HGNC:7423|MIM:300116|Ensembl:ENSG00000214827|HPRD:02122|Vega:OTTHUMG00000156241 X Xq28 mature T-cell proliferation 1 protein-coding MTCP1 mature T-cell proliferation 1 O MTCP-1 type B1|mature T-cell proliferation 1 isoform p13|mature T-cell proliferation-1 type B1|protein p13 MTCP-1 20121230 -9606 4519 CYTB - MTCYB HGNC:7427|MIM:516020 MT - cytochrome b protein-coding MT-CYB mitochondrially encoded cytochrome b O - 20121222 -9606 4520 MTF1 - MTF-1|ZRF HGNC:7428|MIM:600172|Ensembl:ENSG00000188786|HPRD:02546|Vega:OTTHUMG00000004439 1 1p33 metal-regulatory transcription factor 1 protein-coding MTF1 metal-regulatory transcription factor 1 O MRE-binding transcription factor|MRE-binding transcription factor-1|metal regulatory transcription factor 1|metal-responsive transcription factor 1|transcription factor MTF-1|zinc regulatory factor 20121230 -9606 4521 NUDT1 - MTH1 HGNC:8048|MIM:600312|Ensembl:ENSG00000106268|HPRD:02634|Vega:OTTHUMG00000023072 7 7p22 nudix (nucleoside diphosphate linked moiety X)-type motif 1 protein-coding NUDT1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 O 2-hydroxy-dATP diphosphatase|7,8-dihydro-8-oxoguanine triphosphatase|8-oxo-7,8-dihydrodeoxyguanosine triphosphatase|8-oxo-7,8-dihydroguanosine triphosphatase|8-oxo-dGTPase|mutT human homolog 1|nucleoside diphosphate-linked moiety X motif 1|nucleoside diphosphate-linked moiety X-type motif 1|nudix motif 1 20121230 -9606 4522 MTHFD1 - MTHFC|MTHFD HGNC:7432|MIM:172460|Ensembl:ENSG00000100714|HPRD:01403|Vega:OTTHUMG00000141309 14 14q24 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase protein-coding MTHFD1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase O 5,10-methylenetetrahydrofolate dehydrogenase, 5,10-methylenetetrahydrofolate cyclohydrolase, 10-formyltetrahydrofolate synthetase|C-1-tetrahydrofolate synthase, cytoplasmic|C1-THF synthase|cytoplasmic C-1-tetrahydrofolate synthase 20121230 -9606 4523 MTHFD1P1 - MTHFDL1|MTHFDP1 HGNC:7433 X Xp11.21 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 pseudogene 1 pseudo MTHFD1P1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 pseudogene 1 O - 20121230 -9606 4524 MTHFR RP11-56N19.4 - HGNC:7436|MIM:607093|Ensembl:ENSG00000177000|HPRD:06158|Vega:OTTHUMG00000002277 1 1p36.3 methylenetetrahydrofolate reductase (NAD(P)H) protein-coding MTHFR methylenetetrahydrofolate reductase (NAD(P)H) O 5,10-methylenetetrahydrofolate reductase (NADPH)|methylenetetrahydrofolate reductase 20121230 -9606 4528 MTIF2 - - HGNC:7441|MIM:603766|Ensembl:ENSG00000085760|HPRD:04792|Vega:OTTHUMG00000129338 2 2p16.1 mitochondrial translational initiation factor 2 protein-coding MTIF2 mitochondrial translational initiation factor 2 O IF-2(Mt)|IF-2mt|IF2(mt)|translation initiation factor IF-2, mitochondrial 20121230 -9606 4531 MTL3P - MTL3 HGNC:7444 18 18q22.1 metallothionein-like 3, pseudogene pseudo MTL3P metallothionein-like 3, pseudogene O - 20121230 -9606 4534 MTM1 - CNM|MTMX|XLMTM HGNC:7448|MIM:300415|Ensembl:ENSG00000171100|HPRD:02331|Vega:OTTHUMG00000024158 X Xq28 myotubularin 1 protein-coding MTM1 myotubularin 1 O myotubularin 20121230 -9606 4535 ND1 - MTND1 HGNC:7455|MIM:516000 MT - NADH dehydrogenase, subunit 1 (complex I) protein-coding MT-ND1 mitochondrially encoded NADH dehydrogenase 1 O NADH dehydrogenase subunit 1 20121222 -9606 4536 ND2 - MTND2 HGNC:7456|MIM:516001 MT - MTND2 protein-coding MT-ND2 mitochondrially encoded NADH dehydrogenase 2 O NADH dehydrogenase subunit 2 20121222 -9606 4537 ND3 - MTND3 HGNC:7458|MIM:516002 MT - NADH dehydrogenase, subunit 3 (complex I) protein-coding MT-ND3 mitochondrially encoded NADH dehydrogenase 3 O NADH dehydrogenase subunit 3 20121222 -9606 4538 ND4 - MTND4 HGNC:7459|MIM:516003 MT - NADH dehydrogenase, subunit 4 (complex I) protein-coding MT-ND4 mitochondrially encoded NADH dehydrogenase 4 O NADH dehydrogenase subunit 4 20121222 -9606 4539 ND4L - MTND4L HGNC:7460|MIM:516004 MT - NADH dehydrogenase, subunit 4L (complex I) protein-coding MT-ND4L mitochondrially encoded NADH 4L O NADH dehydrogenase subunit 4L 20121222 -9606 4540 ND5 - MTND5 HGNC:7461|MIM:516005 MT - NADH dehydrogenase, subunit 5 (complex I) protein-coding MT-ND5 mitochondrially encoded NADH dehydrogenase 5 O NADH dehydrogenase subunit 5 20121222 -9606 4541 ND6 - MTND6 HGNC:7462|MIM:516006 MT - NADH dehydrogenase, subunit 6 (complex I) protein-coding MT-ND6 mitochondrially encoded NADH dehydrogenase 6 O NADH dehydrogenase subunit 6 20121222 -9606 4542 MYO1F - - HGNC:7600|MIM:601480|Ensembl:ENSG00000142347|HPRD:03282 19 19p13.3-p13.2 myosin IF protein-coding MYO1F myosin IF O myosin-ID|myosin-Ie|unconventional myosin-If 20121230 -9606 4543 MTNR1A - MEL-1A-R|MT1 HGNC:7463|MIM:600665|Ensembl:ENSG00000168412|HPRD:02812|Vega:OTTHUMG00000160316 4 4q35.1 melatonin receptor 1A protein-coding MTNR1A melatonin receptor 1A O mel1a receptor|melatonin receptor type 1A 20121230 -9606 4544 MTNR1B - FGQTL2|MEL-1B-R|MT2 HGNC:7464|MIM:600804|Ensembl:ENSG00000134640|HPRD:02882|Vega:OTTHUMG00000167364 11 11q21-q22 melatonin receptor 1B protein-coding MTNR1B melatonin receptor 1B O mel1b receptor|melatonin receptor MEL1B|melatonin receptor type 1B 20121230 -9606 4547 MTTP - ABL|MTP HGNC:7467|MIM:157147|Ensembl:ENSG00000138823|HPRD:01144|Vega:OTTHUMG00000131023 4 4q24 microsomal triglyceride transfer protein protein-coding MTTP microsomal triglyceride transfer protein O microsomal triglyceride transfer protein (large polypeptide, 88kDa)|microsomal triglyceride transfer protein large subunit 20121230 -9606 4548 MTR - MS|cblG HGNC:7468|MIM:156570|Ensembl:ENSG00000116984|HPRD:01136|Vega:OTTHUMG00000040060 1 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding MTR 5-methyltetrahydrofolate-homocysteine methyltransferase O 5-methyltetrahydrofolate-homocysteine methyltransferase 1|cobalamin-dependent methionine synthase|methionine synthase|vitamin-B12 dependent methionine synthase 20121230 -9606 4549 RNR1 - MTRNR1 HGNC:7470|MIM:561000 MT - s-rRNA rRNA MT-RNR1 mitochondrially encoded 12S RNA O - 20121222 -9606 4550 RNR2 - MTRNR2 HGNC:7471|MIM:561010 MT - l-rRNA rRNA MT-RNR2 mitochondrially encoded 16S RNA O - 20121222 -9606 4552 MTRR - MSR|cblE HGNC:7473|MIM:602568|Ensembl:ENSG00000124275|HPRD:03979|Vega:OTTHUMG00000090477 5 5p15.31 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase O [methionine synthase]-cobalamin methyltransferase (cob(II)alamin reducing)|methionine synthase reductase|methionine synthase reductase, mitochondrial 20121230 -9606 4553 TRNA - MTTA HGNC:7475|MIM:590000 MT - tRNA tRNA MT-TA mitochondrially encoded tRNA alanine O - 20120919 -9606 4555 TRND - MTTD HGNC:7478|MIM:590015 MT - tRNA tRNA MT-TD mitochondrially encoded tRNA aspartic acid O - 20120919 -9606 4556 TRNE - MTTE HGNC:7479|MIM:590025 MT - tRNA tRNA MT-TE mitochondrially encoded tRNA glutamic acid O - 20120919 -9606 4558 TRNF - - HGNC:7481|MIM:590070 MT - tRNA tRNA MT-TF mitochondrially encoded tRNA phenylalanine O - 20121119 -9606 4563 TRNG - MTTG HGNC:7486|MIM:590035 MT - tRNA tRNA MT-TG mitochondrially encoded tRNA glycine O - 20120919 -9606 4564 TRNH - MTTH HGNC:7487|MIM:590040 MT - tRNA tRNA MT-TH mitochondrially encoded tRNA histidine O - 20120919 -9606 4565 TRNI - MTTI HGNC:7488|MIM:590045 MT - tRNA tRNA MT-TI mitochondrially encoded tRNA isoleucine O - 20121018 -9606 4566 TRNK - MTTK HGNC:7489|MIM:590060 MT - tRNA tRNA MT-TK mitochondrially encoded tRNA lysine O - 20121124 -9606 4567 TRNL1 - MTTL1 HGNC:7490|MIM:590050 MT - tRNA tRNA MT-TL1 mitochondrially encoded tRNA leucine 1 (UUA/G) O - 20121119 -9606 4568 TRNL2 - MTTL2 HGNC:7491|MIM:590055 MT - tRNA tRNA MT-L2 mitochondrially encoded tRNA leucine 2 (CUN) O - 20120919 -9606 4569 TRNM - MTTM HGNC:7492|MIM:590065 MT - tRNA tRNA MT-TM mitochondrially encoded tRNA methionine O - 20121018 -9606 4570 TRNN - MTTN HGNC:7493|MIM:590010 MT - tRNA tRNA MT-TN mitochondrially encoded tRNA asparagine O - 20120919 -9606 4571 TRNP - MTTP HGNC:7494|MIM:590075 MT - tRNA tRNA MT-TP mitochondrially encoded tRNA proline O - 20120919 -9606 4572 TRNQ - MTTQ HGNC:7495|MIM:590030 MT - tRNA tRNA MT-TQ mitochondrially encoded tRNA glutamine O - 20121119 -9606 4573 TRNR - MTTR HGNC:7496|MIM:590005 MT - tRNA tRNA MT-TR mitochondrially encoded tRNA arginine O - 20120919 -9606 4574 TRNS1 - MTTS1 HGNC:7497|MIM:590080 MT - tRNA tRNA MT-TS1 mitochondrially encoded tRNA serine 1 (UCN) O - 20121119 -9606 4575 TRNS2 - MTTS2 HGNC:7498|MIM:590085 MT - tRNA tRNA MT-TS2 mitochondrially encoded tRNA serine 2 (AGU/C) O - 20121119 -9606 4576 TRNT - MTTT HGNC:7499|MIM:590090 MT - tRNA tRNA MT-TT mitochondrially encoded tRNA threonine O - 20121119 -9606 4577 TRNV - MTTV HGNC:7500|MIM:590105 MT - tRNA tRNA MT-TV mitochondrially encoded tRNA valine O - 20121119 -9606 4578 TRNW - MTTW HGNC:7501|MIM:590095 MT - tRNA tRNA MT-TW mitochondrially encoded tRNA tryptophan O - 20121119 -9606 4579 TRNY - MTTY HGNC:7502|MIM:590100 MT - tRNA tRNA MT-TY mitochondrially encoded tRNA tyrosine O - 20120919 -9606 4580 MTX1 RP11-263K19.5 MTX|MTXN HGNC:7504|MIM:600605|Ensembl:ENSG00000173171|HPRD:11861|Vega:OTTHUMG00000035708 1 1q21 metaxin 1 protein-coding MTX1 metaxin 1 O metaxin-1|mitochondrial outer membrane import complex protein 1 20121230 -9606 4581 MTX1P1 - MTX1P|MTXP|psMTX HGNC:7505 1 1q22 metaxin 1 pseudogene 1 pseudo MTX1P1 metaxin 1 pseudogene 1 O - 20121230 -9606 4582 MUC1 RP11-263K19.2 CD227|EMA|H23AG|KL-6|MAM6|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM HGNC:7508|MIM:158340|Ensembl:ENSG00000185499|HPRD:01152|Vega:OTTHUMG00000035681 1 1q21 mucin 1, cell surface associated protein-coding MUC1 mucin 1, cell surface associated O DF3 antigen|H23 antigen|breast carcinoma-associated antigen DF3|carcinoma-associated mucin|episialin|krebs von den Lungen-6|mucin 1, transmembrane|mucin-1|peanut-reactive urinary mucin|polymorphic epithelial mucin|tumor associated epithelial mucin|tumor-associated epithelial membrane antigen|tumor-associated mucin 20121230 -9606 4583 MUC2 - MLP|MUC-2|SMUC HGNC:7512|MIM:158370|Ensembl:ENSG00000198788|HPRD:11828|Vega:OTTHUMG00000156800 11 11p15.5 mucin 2, oligomeric mucus/gel-forming protein-coding MUC2 mucin 2, oligomeric mucus/gel-forming O intestinal mucin-2|mucin 2, intestinal/tracheal|mucin-2|mucin-like protein 20121230 -9606 4584 MUC3A - MUC-3A|MUC3 HGNC:7513|MIM:158371|Ensembl:ENSG00000169894|Vega:OTTHUMG00000157038 7 7q22 mucin 3A, cell surface associated protein-coding MUC3A mucin 3A, cell surface associated O mucin 3, intestinal|mucin 3A, intestinal|mucin-3A 20121230 -9606 4585 MUC4 - ASGP|HSA276359|MUC-4 HGNC:7514|MIM:158372|Ensembl:ENSG00000145113|HPRD:11829|Vega:OTTHUMG00000151827 3 3q29 mucin 4, cell surface associated protein-coding MUC4 mucin 4, cell surface associated O ascites sialoglycoprotein|mucin 4, tracheobronchial|mucin-4|pancreatic adenocarcinoma mucin|testis mucin|tracheobronchial mucin 20121230 -9606 4586 MUC5AC - MUC5|TBM|leB HGNC:7515|MIM:158373|Ensembl:ENSG00000215182|Vega:OTTHUMG00000154270 11 11p15.5 mucin 5AC, oligomeric mucus/gel-forming protein-coding MUC5AC mucin 5AC, oligomeric mucus/gel-forming O gastric mucin|lewis B blood group antigen|major airway glycoprotein|mucin 5, subtypes A and C, tracheobronchial/gastric|mucin 5AC, oligomeric mucus/gel-forming pseudogene|mucin-5 subtype AC, tracheobronchial|mucin-5AC|tracheobronchial mucin 20121230 -9606 4588 MUC6 - MUC-6 HGNC:7517|MIM:158374|Ensembl:ENSG00000184956|Vega:OTTHUMG00000165140 11 11p15.5 mucin 6, oligomeric mucus/gel-forming protein-coding MUC6 mucin 6, oligomeric mucus/gel-forming O gastric mucin-6|mucin 6, gastric|mucin-6 20121230 -9606 4589 MUC7 - MG2 HGNC:7518|MIM:158375|Ensembl:ENSG00000171195|HPRD:11759|Vega:OTTHUMG00000129916 4 4q13.3 mucin 7, secreted protein-coding MUC7 mucin 7, secreted O MUC-7|apo-MG2|mucin 7, salivary|mucin-7|salivary mucin-7 20121230 -9606 4591 TRIM37 - MUL|POB1|TEF3 HGNC:7523|MIM:605073|Ensembl:ENSG00000108395|HPRD:05463|Vega:OTTHUMG00000179360 17 17q23.2 tripartite motif containing 37 protein-coding TRIM37 tripartite motif containing 37 O E3 ubiquitin-protein ligase TRIM37|RING-B-box-coiled-coil protein|mulibrey nanism protein|tripartite motif-containing 37|tripartite motif-containing protein 37 20121230 -9606 4593 MUSK RP11-104M22.1 - HGNC:7525|MIM:601296|Ensembl:ENSG00000030304|HPRD:03190|Vega:OTTHUMG00000020485 9 9q31.3-q32 muscle, skeletal, receptor tyrosine kinase protein-coding MUSK muscle, skeletal, receptor tyrosine kinase O muscle, skeletal receptor tyrosine-protein kinase|muscle-specific kinase receptor|muscle-specific tyrosine-protein kinase receptor 20121230 -9606 4594 MUT - MCM HGNC:7526|MIM:609058|Ensembl:ENSG00000146085|HPRD:02014|Vega:OTTHUMG00000014814 6 6p12.3 methylmalonyl CoA mutase protein-coding MUT methylmalonyl CoA mutase O methylmalonyl Coenzyme A mutase|methylmalonyl-CoA isomerase|methylmalonyl-CoA mutase, mitochondrial 20121230 -9606 4595 MUTYH RP4-534D1.2 CYP2C|MYH HGNC:7527|MIM:604933|Ensembl:ENSG00000132781|HPRD:05380|Vega:OTTHUMG00000007682 1 1p34.1 mutY homolog (E. coli) protein-coding MUTYH mutY homolog (E. coli) O A/G-specific adenine DNA glycosylase 20121230 -9606 4597 MVD - FP17780|MPD HGNC:7529|MIM:603236|Ensembl:ENSG00000167508|HPRD:04454|Vega:OTTHUMG00000137865 16 16q24.3 mevalonate (diphospho) decarboxylase protein-coding MVD mevalonate (diphospho) decarboxylase O MDDase|diphosphomevalonate decarboxylase|mevalonate pyrophosphate decarboxylase|mevalonate pyrophosphate decarboxylase 20121230 -9606 4598 MVK - LRBP|MK|MVLK|POROK3 HGNC:7530|MIM:251170|Ensembl:ENSG00000110921|HPRD:02015|Vega:OTTHUMG00000169256 12 12q24 mevalonate kinase protein-coding MVK mevalonate kinase O LH receptor mRNA-binding protein|mevalonate kinase 1 20121230 -9606 4599 MX1 - IFI-78K|IFI78|MX|MxA HGNC:7532|MIM:147150|Ensembl:ENSG00000157601|HPRD:00919|Vega:OTTHUMG00000086755 21 21q22.3 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) protein-coding MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) O interferon-induced GTP-binding protein Mx1|interferon-regulated resistance GTP-binding protein MxA|myxoma resistance protein 1 20121230 -9606 4600 MX2 - MXB HGNC:7533|MIM:147890|Ensembl:ENSG00000183486|HPRD:01001|Vega:OTTHUMG00000086753 21 21q22.3 myxovirus (influenza virus) resistance 2 (mouse) protein-coding MX2 myxovirus (influenza virus) resistance 2 (mouse) O interferon-induced GTP-binding protein Mx2|interferon-regulated resistance GTP-binding protein MXB|myxovirus resistance protein 2|p78-related protein|second interferon-induced protein p78 20121230 -9606 4601 MXI1 RP11-549L6.1 MAD2|MXD2|MXI|bHLHc11 HGNC:7534|MIM:600020|Ensembl:ENSG00000119950|HPRD:02486|Vega:OTTHUMG00000019033 10 10q24-q25 MAX interactor 1, dimerization protein protein-coding MXI1 MAX interactor 1, dimerization protein O MAX dimerization protein 2|Max-related transcription factor|class C basic helix-loop-helix protein 11|max-interacting protein 1 20121230 -9606 4602 MYB RP1-32B1.1 Cmyb|c-myb|c-myb_CDS|efg HGNC:7545|MIM:189990|Ensembl:ENSG00000118513|HPRD:01810|Vega:OTTHUMG00000015629 6 6q22-q23 v-myb myeloblastosis viral oncogene homolog (avian) protein-coding MYB v-myb myeloblastosis viral oncogene homolog (avian) O c-myb protein (140 AA)|c-myb10A_CDS|c-myb13A_CDS|c-myb14A_CDS|c-myb8B_CDS|proto-oncogene c-Myb|transcriptional activator Myb 20121230 -9606 4603 MYBL1 - A-MYB|AMYB HGNC:7547|MIM:159405|Ensembl:ENSG00000185697|Vega:OTTHUMG00000164559 8 8q22 v-myb myeloblastosis viral oncogene homolog (avian)-like 1 protein-coding MYBL1 v-myb myeloblastosis viral oncogene homolog (avian)-like 1 O myb-like protein 1|myb-related protein A|v-myb avian myeloblastosis viral oncogene homolog-like 1 20121230 -9606 4604 MYBPC1 - LCCS4|MYBPCC|MYBPCS HGNC:7549|MIM:160794|Ensembl:ENSG00000196091|HPRD:01185|Vega:OTTHUMG00000170274 12 12q23.2 myosin binding protein C, slow type protein-coding MYBPC1 myosin binding protein C, slow type O C-protein, skeletal muscle slow isoform|myosin-binding protein C, slow-type|skeletal muscle C-protein|slow MyBP-C 20121230 -9606 4605 MYBL2 - B-MYB|BMYB HGNC:7548|MIM:601415|Ensembl:ENSG00000101057|HPRD:03247|Vega:OTTHUMG00000033062 20 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 protein-coding MYBL2 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 O myb-like protein 2|myb-related protein B|v-myb avian myeloblastosis viral oncogene homolog-like 2 20121230 -9606 4606 MYBPC2 - MYBPC|MYBPCF HGNC:7550|MIM:160793|Ensembl:ENSG00000086967|HPRD:01184 19 19q13.33 myosin binding protein C, fast type protein-coding MYBPC2 myosin binding protein C, fast type O C-protein, skeletal muscle fast isoform|fast MyBP-C|fast-type muscle myosin-binding-protein C|myosin-binding protein C, fast-type 20121230 -9606 4607 MYBPC3 - CMH4|FHC|MYBP-C HGNC:7551|MIM:600958|Ensembl:ENSG00000134571|HPRD:02980|Vega:OTTHUMG00000166986 11 11p11.2 myosin binding protein C, cardiac protein-coding MYBPC3 myosin binding protein C, cardiac O C-protein, cardiac muscle isoform|myosin-binding protein C, cardiac-type 20121230 -9606 4608 MYBPH - - HGNC:7552|MIM:160795|Ensembl:ENSG00000133055|HPRD:01186|Vega:OTTHUMG00000042121 1 1q32.1 myosin binding protein H protein-coding MYBPH myosin binding protein H O H-protein|myBP-H|myosin-binding protein H 20121230 -9606 4609 MYC - MRTL|bHLHe39|c-Myc HGNC:7553|MIM:190080|Ensembl:ENSG00000136997|HPRD:01818|Vega:OTTHUMG00000128475 8 8q24.21 v-myc myelocytomatosis viral oncogene homolog (avian) protein-coding MYC v-myc myelocytomatosis viral oncogene homolog (avian) O avian myelocytomatosis viral oncogene homolog|class E basic helix-loop-helix protein 39|myc proto-oncogene protein|myc-related translation/localization regulatory factor|proto-oncogene c-Myc|transcription factor p64|v-myc avian myelocytomatosis viral oncogene homolog 20121230 -9606 4610 MYCL1 RP1-118J21.4 LMYC|MYCL|bHLHe38 HGNC:7555|MIM:164850|Ensembl:ENSG00000116990|HPRD:01279|Vega:OTTHUMG00000009243 1 1p34.2 v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) protein-coding MYCL1 v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) O class E basic helix-loop-helix protein 38|l-myc-1 proto-oncogene|myc-related gene from lung cancer|protein L-Myc-1 20121230 -9606 4611 MYCL2 - bHLHe38 HGNC:7556|MIM:310310|HPRD:02403 X Xq22-q23 v-myc myelocytomatosis viral oncogene homolog 2 (avian) pseudo MYCL2 v-myc myelocytomatosis viral oncogene homolog 2 (avian) O - 20121230 -9606 4612 MYCLK1 - - HGNC:7558|MIM:164865 7 7p15 v-myc myelocytomatosis viral oncogene homolog (avian)-like 1 protein-coding MYCLK1 v-myc myelocytomatosis viral oncogene homolog (avian)-like 1 O Avian myelocytomatosis viral (v-myc) oncogene homolog like 1|v-myc avian myelocytomatosis viral oncogene homolog-like 1 20080828 -9606 4613 MYCN - MODED|N-myc|NMYC|ODED|bHLHe37 HGNC:7559|MIM:164840|Ensembl:ENSG00000134323|HPRD:01278|Vega:OTTHUMG00000039579 2 2p24.3 v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) protein-coding MYCN v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) O N-myc proto-oncogene protein|class E basic helix-loop-helix protein 37|neuroblastoma MYC oncogene|neuroblastoma-derived v-myc avian myelocytomatosis viral related oncogene|oncogene NMYC|pp65/67|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived 20121230 -9606 4615 MYD88 - MYD88D HGNC:7562|MIM:602170|Ensembl:ENSG00000172936|HPRD:03703|Vega:OTTHUMG00000131083 3 3p22 myeloid differentiation primary response 88 protein-coding MYD88 myeloid differentiation primary response 88 O myeloid differentiation primary response gene (88)|myeloid differentiation primary response protein MyD88 20121230 -9606 4616 GADD45B - GADD45BETA|MYD118 HGNC:4096|MIM:604948|Ensembl:ENSG00000099860|HPRD:05382|Vega:OTTHUMG00000180434 19 19p13.3 growth arrest and DNA-damage-inducible, beta protein-coding GADD45B growth arrest and DNA-damage-inducible, beta O growth arrest and DNA damage-inducible protein GADD45 beta|myeloid differentiation primary response protein MyD118|negative growth regulatory protein MyD118 20121230 -9606 4617 MYF5 - bHLHc2 HGNC:7565|MIM:159990|Ensembl:ENSG00000111049|HPRD:01168|Vega:OTTHUMG00000170166 12 12q21 myogenic factor 5 protein-coding MYF5 myogenic factor 5 O class C basic helix-loop-helix protein 2|myf-5 20121230 -9606 4618 MYF6 - CNM3|MRF4|bHLHc4|myf-6 HGNC:7566|MIM:159991|Ensembl:ENSG00000111046|HPRD:01169|Vega:OTTHUMG00000170165 12 12q21 myogenic factor 6 (herculin) protein-coding MYF6 myogenic factor 6 (herculin) O class C basic helix-loop-helix protein 4|muscle-specific regulatory factor 4|myogenic factor 6 20121230 -9606 4619 MYH1 - MYHSA1|MYHa|MyHC-2X/D|MyHC-2x HGNC:7567|MIM:160730|Ensembl:ENSG00000109061|HPRD:08872|Vega:OTTHUMG00000130362 17 17p13.1 myosin, heavy chain 1, skeletal muscle, adult protein-coding MYH1 myosin, heavy chain 1, skeletal muscle, adult O myHC-IIx/d|myosin heavy chain 1|myosin heavy chain 2x|myosin heavy chain IIx/d|myosin heavy chain, skeletal muscle, adult 1|myosin, heavy polypeptide 1, skeletal muscle, adult|myosin-1 20121230 -9606 4620 MYH2 - MYH2A|MYHSA2|MYHas8|MyHC-2A|MyHC-IIa HGNC:7572|MIM:160740|Ensembl:ENSG00000125414|HPRD:01173|Vega:OTTHUMG00000130363 17 17p13.1 myosin, heavy chain 2, skeletal muscle, adult protein-coding MYH2 myosin, heavy chain 2, skeletal muscle, adult O fast 2a myosin heavy chain|myosin heavy chain 2|myosin heavy chain 2a|myosin heavy chain IIa|myosin heavy chain, skeletal muscle, adult 2|myosin, heavy polypeptide 2, skeletal muscle, adult|myosin-2|type IIA myosin heavy chain 20121230 -9606 4621 MYH3 - HEMHC|MYHC-EMB|MYHSE1|SMHCE HGNC:7573|MIM:160720|Ensembl:ENSG00000109063|HPRD:01172|Vega:OTTHUMG00000130367 17 17p13.1 myosin, heavy chain 3, skeletal muscle, embryonic protein-coding MYH3 myosin, heavy chain 3, skeletal muscle, embryonic O myosin heavy chain, fast skeletal muscle, embryonic|myosin, heavy polypeptide 3, skeletal muscle, embryonic|myosin, skeletal, heavy chain, embryonic 1|myosin-3 20121230 -9606 4622 MYH4 - MYH2B|MyHC-2B|MyHC-IIb HGNC:7574|MIM:160742|Ensembl:ENSG00000264424|HPRD:08873|Vega:OTTHUMG00000130365 17 17p13.1 myosin, heavy chain 4, skeletal muscle protein-coding MYH4 myosin, heavy chain 4, skeletal muscle O myosin heavy chain 2b|myosin heavy chain 4|myosin heavy chain IIb|myosin heavy chain, skeletal muscle, fetal|myosin, heavy polypeptide 4, skeletal muscle|myosin-4 20121230 -9606 4624 MYH6 - ASD3|CMD1EE|CMH14|MYHC|MYHCA|SSS3|alpha-MHC HGNC:7576|MIM:160710|Ensembl:ENSG00000197616|HPRD:01171|Vega:OTTHUMG00000028753 14 14q12 myosin, heavy chain 6, cardiac muscle, alpha protein-coding MYH6 myosin, heavy chain 6, cardiac muscle, alpha O myHC-alpha|myosin heavy chain 6|myosin heavy chain, cardiac muscle alpha isoform|myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)|myosin-6 20121230 -9606 4625 MYH7 - CMD1S|CMH1|MPD1|MYHCB|SPMD|SPMM HGNC:7577|MIM:160760|Ensembl:ENSG00000092054|HPRD:01175|Vega:OTTHUMG00000028755 14 14q12 myosin, heavy chain 7, cardiac muscle, beta protein-coding MYH7 myosin, heavy chain 7, cardiac muscle, beta O beta-myosin heavy chain|myHC-beta|myhc-slow|myopathy, distal 1|myosin heavy chain (AA 1-96)|myosin heavy chain 7|myosin heavy chain slow isoform|myosin heavy chain, cardiac muscle beta isoform|myosin, heavy polypeptide 7, cardiac muscle, beta|myosin-7|rhabdomyosarcoma antigen MU-RMS-40.7A 20121230 -9606 4626 MYH8 - MyHC-peri|MyHC-pn|gtMHC-F HGNC:7578|MIM:160741|Ensembl:ENSG00000133020|HPRD:11760|Vega:OTTHUMG00000130361 17 17p13.1 myosin, heavy chain 8, skeletal muscle, perinatal protein-coding MYH8 myosin, heavy chain 8, skeletal muscle, perinatal O fetal-myosin heavy chain|myHC-perinatal|myosin heavy chain 8|myosin heavy chain, skeletal muscle, perinatal|myosin, heavy polypeptide 8, skeletal muscle, perinatal|myosin-8 20121230 -9606 4627 MYH9 RP1-68O2.1 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA HGNC:7579|MIM:160775|Ensembl:ENSG00000100345|HPRD:01177|Vega:OTTHUMG00000030429 22 22q13.1 myosin, heavy chain 9, non-muscle protein-coding MYH9 myosin, heavy chain 9, non-muscle O cellular myosin heavy chain, type A|myosin heavy chain 9|myosin heavy chain, non-muscle IIa|myosin-9|non-muscle myosin heavy chain A|non-muscle myosin heavy chain IIa|non-muscle myosin heavy polypeptide 9|nonmuscle myosin heavy chain II-A 20121230 -9606 4628 MYH10 - NMMHC-IIB|NMMHCB HGNC:7568|MIM:160776|Ensembl:ENSG00000133026|HPRD:01178|Vega:OTTHUMG00000108195 17 17p13 myosin, heavy chain 10, non-muscle protein-coding MYH10 myosin, heavy chain 10, non-muscle O cellular myosin heavy chain, type B|myosin heavy chain, nonmuscle type B|myosin, heavy polypeptide 10, non-muscle|myosin-10|nonmuscle myosin II heavy chain-B|nonmuscle myosin heavy chain IIB 20121230 -9606 4629 MYH11 - AAT4|FAA4|SMHC|SMMHC HGNC:7569|MIM:160745|Ensembl:ENSG00000133392|HPRD:01174|Vega:OTTHUMG00000129935 16 16p13.11 myosin, heavy chain 11, smooth muscle protein-coding MYH11 myosin, heavy chain 11, smooth muscle O myosin heavy chain 11|myosin heavy chain, smooth muscle isoform|myosin, heavy polypeptide 11, smooth muscle|myosin-11 20121230 -9606 4630 MYHK - - HGNC:7580 - - myosin, heavy chain kinase protein-coding MYHK myosin, heavy chain kinase O myosin, heavy polypeptide kinase 20080828 -9606 4632 MYL1 - MLC1F|MLC3F HGNC:7582|MIM:160780|Ensembl:ENSG00000168530|HPRD:01180|Vega:OTTHUMG00000132992 2 2q33-q34 myosin, light chain 1, alkali; skeletal, fast protein-coding MYL1 myosin, light chain 1, alkali; skeletal, fast O A1 catalytic|A2 catalytic|MLC1/MLC3|MLC1F/MLC3F|myosin light chain 1/3, skeletal muscle isoform|myosin light chain A1/A2|myosin light chain alkali 1/2|myosin, light polypeptide 1, alkali; skeletal, fast 20121230 -9606 4633 MYL2 - CMH10|MLC2 HGNC:7583|MIM:160781|Ensembl:ENSG00000111245|HPRD:01181|Vega:OTTHUMG00000169535 12 12q24.11 myosin, light chain 2, regulatory, cardiac, slow protein-coding MYL2 myosin, light chain 2, regulatory, cardiac, slow O MLC-2|MLC-2v|RLC of myosin|cardiac ventricular myosin light chain 2|myosin light chain 2|myosin regulatory light chain 2, ventricular/cardiac muscle isoform|myosin, light polypeptide 2, regulatory, cardiac, slow|regulatory light chain of myosin|slow cardiac myosin regulatory light chain 2 20121230 -9606 4634 MYL3 - CMH8|MLC1SB|MLC1V|VLC1 HGNC:7584|MIM:160790|Ensembl:ENSG00000160808|HPRD:01183|Vega:OTTHUMG00000133516 3 3p21.3-p21.2 myosin, light chain 3, alkali; ventricular, skeletal, slow protein-coding MYL3 myosin, light chain 3, alkali; ventricular, skeletal, slow O CMLC1|cardiac myosin light chain 1|myosin light chain 1, slow-twitch muscle B/ventricular isoform|myosin light chain 3|myosin, light polypeptide 3, alkali; ventricular, skeletal, slow|ventricular/slow twitch myosin alkali light chain 20121230 -9606 4635 MYL4 PRO1957 ALC1|AMLC|GT1 HGNC:7585|MIM:160770|Ensembl:ENSG00000198336|HPRD:01176|Vega:OTTHUMG00000178232 17 17q21-qter myosin, light chain 4, alkali; atrial, embryonic protein-coding MYL4 myosin, light chain 4, alkali; atrial, embryonic O myosin light chain 1, embryonic muscle/atrial isoform|myosin light chain 4|myosin light chain alkali GT-1 isoform|myosin, atrial/fetal muscle, light chain|myosin, light polypeptide 4, alkali; atrial, embryonic 20121230 -9606 4636 MYL5 - - HGNC:7586|MIM:160782|Ensembl:ENSG00000215375|HPRD:01182|Vega:OTTHUMG00000159971 4 4p16.3 myosin, light chain 5, regulatory protein-coding MYL5 myosin, light chain 5, regulatory O MYLC2|myLC-2|myosin light chain 5|myosin regulatory light chain 5|myosin, light polypeptide 5, regulatory|superfast myosin regulatory light chain 2 20121230 -9606 4637 MYL6 - ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM HGNC:7587|MIM:609931|Ensembl:ENSG00000092841|HPRD:17618|Vega:OTTHUMG00000170200 12 12q13.2 myosin, light chain 6, alkali, smooth muscle and non-muscle protein-coding MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle O 17 kDa myosin light chain|myosin light chain A3|myosin light chain alkali 3|myosin light polypeptide 6|myosin, light polypeptide 6, alkali, smooth muscle and non-muscle 20121230 -9606 4638 MYLK - AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK HGNC:7590|MIM:600922|Ensembl:ENSG00000065534|HPRD:02952|Vega:OTTHUMG00000141304 3 3q21 myosin light chain kinase protein-coding MYLK myosin light chain kinase O kinase-related protein|myosin light chain kinase, smooth muscle|myosin, light polypeptide kinase|smooth muscle myosin light chain kinase|telokin 20121230 -9606 4639 MYLL1 - - HGNC:7592 8 - myosin, light chain, cardiac muscle-like 1 protein-coding MYLL1 myosin, light chain, cardiac muscle-like 1 O myosin, light polypeptide, cardiac muscle-like 1 20080828 -9606 4640 MYO1A - BBMI|DFNA48|MIHC|MYHL HGNC:7595|MIM:601478|Ensembl:ENSG00000166866|HPRD:08371|Vega:OTTHUMG00000149899 12 12q13-q14 myosin IA protein-coding MYO1A myosin IA O brush border myosin I|myosin I heavy chain|myosin, heavy polypeptide-like (100kD)|unconventional myosin-Ia 20121230 -9606 4641 MYO1C - MMI-beta|MMIb|NMI|myr2 HGNC:7597|MIM:606538|Ensembl:ENSG00000197879|HPRD:09411|Vega:OTTHUMG00000090323 17 17p13.3 myosin IC protein-coding MYO1C myosin IC O myosin I beta|myosin-I beta|myosin-Ic|nuclear myosin I|unconventional myosin-Ic 20121230 -9606 4642 MYO1D - myr4 HGNC:7598|MIM:606539|Ensembl:ENSG00000176658|HPRD:07581|Vega:OTTHUMG00000179636 17 17q11-q12 myosin ID protein-coding MYO1D myosin ID O myosin-I gamma|myosin-Id|unconventional myosin-Id 20121230 -9606 4643 MYO1E - FSGS6|HuncM-IC|MYO1C HGNC:7599|MIM:601479|Ensembl:ENSG00000157483|HPRD:03281|Vega:OTTHUMG00000171944 15 15q21-q22 myosin IE protein-coding MYO1E myosin IE O MYO1E variant protein|myosin-IC|unconventional myosin 1E|unconventional myosin-Ie 20121230 -9606 4644 MYO5A - GS1|MYH12|MYO5|MYR12 HGNC:7602|MIM:160777|Ensembl:ENSG00000197535|HPRD:01179|Vega:OTTHUMG00000137383 15 15q21 myosin VA (heavy chain 12, myoxin) protein-coding MYO5A myosin VA (heavy chain 12, myoxin) O dilute myosin heavy chain, non-muscle|myosin V|myosin, heavy polypeptide kinase|myosin-12|myosin-Va|myoxin|unconventional myosin-Va 20121230 -9606 4645 MYO5B - - HGNC:7603|MIM:606540|Ensembl:ENSG00000167306|Vega:OTTHUMG00000179843 18 18q21 myosin VB protein-coding MYO5B myosin VB O MYO5B variant protein|myosin-Vb|unconventional myosin-Vb 20121230 -9606 4646 MYO6 RP3-472A9.1 DFNA22|DFNB37 HGNC:7605|MIM:600970|Ensembl:ENSG00000196586|HPRD:02985|Vega:OTTHUMG00000015061 6 6q13 myosin VI protein-coding MYO6 myosin VI O myosin-VI|unconventional myosin-6|unconventional myosin-VI 20121230 -9606 4647 MYO7A - DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B HGNC:7606|MIM:276903|Ensembl:ENSG00000137474|HPRD:02043|Vega:OTTHUMG00000152822 11 11q13.5 myosin VIIA protein-coding MYO7A myosin VIIA O myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))|unconventional myosin-VIIa 20121230 -9606 4648 MYO7B hCG_42606 - HGNC:7607|MIM:606541|Ensembl:ENSG00000169994|Vega:OTTHUMG00000153419 2 2q21.1 myosin VIIB protein-coding MYO7B myosin VIIB O myosin-VIIb|unconventional myosin-VIIb 20121230 -9606 4649 MYO9A - - HGNC:7608|MIM:604875|Ensembl:ENSG00000066933|HPRD:05341|Vega:OTTHUMG00000133440 15 15q22-q23 myosin IXA protein-coding MYO9A myosin IXA O myosin-IXa|unconventional myosin-9a|unconventional myosin-IXa 20121230 -9606 4650 MYO9B - CELIAC4|MYR5 HGNC:7609|MIM:602129|Ensembl:ENSG00000099331|HPRD:03677 19 19p13.1 myosin IXB protein-coding MYO9B myosin IXB O myosin-IXb|unconventional myosin IXb|unconventional myosin-9b|unconventional myosin-IXb 20121230 -9606 4651 MYO10 - - HGNC:7593|MIM:601481|Ensembl:ENSG00000145555|HPRD:03283|Vega:OTTHUMG00000161822 5 5p15.1-p14.3 myosin X protein-coding MYO10 myosin X O myosin-X|unconventional myosin-10|unconventional myosin-X|unconventionnal myosin-X 20121230 -9606 4653 MYOC - GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin HGNC:7610|MIM:601652|Ensembl:ENSG00000034971|HPRD:03387|Vega:OTTHUMG00000034789 1 1q23-q24 myocilin, trabecular meshwork inducible glucocorticoid response protein-coding MYOC myocilin, trabecular meshwork inducible glucocorticoid response O mutated trabecular meshwork-induced glucocorticoid response protein|myocilin 20121230 -9606 4654 MYOD1 - MYF3|MYOD|PUM|bHLHc1 HGNC:7611|MIM:159970|Ensembl:ENSG00000129152|HPRD:01166|Vega:OTTHUMG00000166358 11 11p15.4 myogenic differentiation 1 protein-coding MYOD1 myogenic differentiation 1 O class C basic helix-loop-helix protein 1|myf-3|myoblast determination protein 1|myogenic factor 3 20121230 -9606 4655 MYSA - - HGNC:7620 - - myasthenic (Lambert-Eaton) syndrome antigen A protein-coding MYSA myasthenic (Lambert-Eaton) syndrome antigen A O - 20080828 -9606 4656 MYOG - MYF4|bHLHc3|myf-4 HGNC:7612|MIM:159980|Ensembl:ENSG00000122180|HPRD:01167|Vega:OTTHUMG00000042127 1 1q31-q41 myogenin (myogenic factor 4) protein-coding MYOG myogenin (myogenic factor 4) O class C basic helix-loop-helix protein 3|myogenic factor 4|myogenin 20121230 -9606 4657 MYP1 - BED HGNC:7615|MIM:310460 X Xq28 myopia 1 (X-linked) unknown MYP1 myopia 1 (X-linked) O - 20120622 -9606 4658 MYP2 - - HGNC:7616|MIM:160700 18 18p11.31 myopia 2 (high grade, autosomal dominant) unknown MYP2 myopia 2 (high grade, autosomal dominant) O - 20120622 -9606 4659 PPP1R12A - M130|MBS|MYPT1 HGNC:7618|MIM:602021|Ensembl:ENSG00000058272|HPRD:03606|Vega:OTTHUMG00000170100 12 12q15-q21 protein phosphatase 1, regulatory subunit 12A protein-coding PPP1R12A protein phosphatase 1, regulatory subunit 12A O myosin binding subunit|myosin phosphatase, target subunit 1|myosin phosphatase-targeting subunit 1|protein phosphatase 1 regulatory subunit 12A|protein phosphatase 1, regulatory (inhibitor) subunit 12A|protein phosphatase myosin-binding subunit 20121230 -9606 4660 PPP1R12B - MYPT2|PP1bp55 HGNC:7619|MIM:603768|Ensembl:ENSG00000077157|HPRD:04794|Vega:OTTHUMG00000041393 1 1q32.1 protein phosphatase 1, regulatory subunit 12B protein-coding PPP1R12B protein phosphatase 1, regulatory subunit 12B O myosin phosphatase target subunit 2|myosin phosphatase, target subunit 2|myosin phosphatase-targeting subunit 2|protein phosphatase 1 regulatory subunit 12B|protein phosphatase 1, regulatory (inhibitor) subunit 12B 20121230 -9606 4661 MYT1 - C20orf36|MTF1|MYTI|PLPB1 HGNC:7622|MIM:600379|Ensembl:ENSG00000196132|HPRD:02659|Vega:OTTHUMG00000149988 20 20q13.33 myelin transcription factor 1 protein-coding MYT1 myelin transcription factor 1 O myelin transcription factor I|proteolipid protein binding protein|proteolipid protein-binding protein 20121230 -9606 4663 NA - NAC HGNC:7625 X - neuroacanthocytosis unknown NA neuroacanthocytosis O - 20121209 -9606 4664 NAB1 - - HGNC:7626|MIM:600800|Ensembl:ENSG00000138386|HPRD:02881|Vega:OTTHUMG00000132689 2 2q32.3-q33 NGFI-A binding protein 1 (EGR1 binding protein 1) protein-coding NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) O EGR-1-binding protein 1|EGR1 binding protein 1|NGFI-A-binding protein 1|transcriptional regulatory protein p54 20121230 -9606 4665 NAB2 - MADER HGNC:7627|MIM:602381|Ensembl:ENSG00000166886|HPRD:03854|Vega:OTTHUMG00000171192 12 12q13.3 NGFI-A binding protein 2 (EGR1 binding protein 2) protein-coding NAB2 NGFI-A binding protein 2 (EGR1 binding protein 2) O EGR-1-binding protein 2|EGR1 binding protein 2|NGFI-A-binding protein 2|melanoma-associated delayed early response protein 20121230 -9606 4666 NACA HSD48 NACA1 HGNC:7629|MIM:601234|Ensembl:ENSG00000196531|HPRD:03137|Vega:OTTHUMG00000170033 12 12q23-q24.1 nascent polypeptide-associated complex alpha subunit protein-coding NACA nascent polypeptide-associated complex alpha subunit O NAC-alpha|alpha-NAC|nascent polypeptide-associated complex subunit alpha|nascent-polypeptide-associated complex alpha polypeptide 20121230 -9606 4668 NAGA - D22S674|GALB HGNC:7631|MIM:104170|Ensembl:ENSG00000198951|HPRD:00076|Vega:OTTHUMG00000151276 22 22q11 N-acetylgalactosaminidase, alpha- protein-coding NAGA N-acetylgalactosaminidase, alpha- O Acetylgalactosaminidase, alpha-N- (alpha-galactosidase B)|alpha-N-acetylgalactosaminidase|alpha-galactosidase B 20121230 -9606 4669 NAGLU - MPS-IIIB|MPS3B|NAG|UFHSD HGNC:7632|MIM:609701|Ensembl:ENSG00000108784|HPRD:02017|Vega:OTTHUMG00000180240 17 17q21 N-acetylglucosaminidase, alpha protein-coding NAGLU N-acetylglucosaminidase, alpha O N-acetyl-alpha-glucosaminidase|alpha-N-acetylglucosaminidase 20121230 -9606 4670 HNRNPM - CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M HGNC:5046|MIM:160994|Ensembl:ENSG00000099783|HPRD:01188 19 19p13.3-p13.2 heterogeneous nuclear ribonucleoprotein M protein-coding HNRNPM heterogeneous nuclear ribonucleoprotein M O CEA receptor|N-acetylglucosamine receptor 1|heterogenous nuclear ribonucleoprotein M4|hnRNA-binding protein M4 20121230 -9606 4671 NAIP - BIRC1|NLRB1|psiNAIP HGNC:7634|MIM:600355|Ensembl:ENSG00000249437|Vega:OTTHUMG00000163318 5 5q13.2 NLR family, apoptosis inhibitory protein protein-coding NAIP NLR family, apoptosis inhibitory protein O baculoviral IAP repeat-containing protein 1|neuronal apoptosis inhibitory protein|nucleotide-binding oligomerization domain, leucine rich repeat and BIR domain containing 1|psi neuronal apoptosis inhibitory protein 20121230 -9606 4672 NAMSD - CMT2D|CMTX4|NADMR HGNC:7635|MIM:310490 X Xq24-q26.1 neuropathy, axonal, motor-sensory with deafness and mental retardation (Cowchock syndrome) unknown NAMSD neuropathy, axonal, motor-sensory with deafness and mental retardation (Cowchock syndrome) O - 20120622 -9606 4673 NAP1L1 - NAP1|NAP1L|NRP HGNC:7637|MIM:164060|Ensembl:ENSG00000187109|HPRD:01248|Vega:OTTHUMG00000169786 12 12q21.2 nucleosome assembly protein 1-like 1 protein-coding NAP1L1 nucleosome assembly protein 1-like 1 O HSP22-like protein interacting protein|NAP-1 related protein|NAP-1-related protein|hNRP 20121230 -9606 4674 NAP1L2 - BPX HGNC:7638|MIM:300026|Ensembl:ENSG00000186462|HPRD:02066|Vega:OTTHUMG00000021827 X Xq13 nucleosome assembly protein 1-like 2 protein-coding NAP1L2 nucleosome assembly protein 1-like 2 O brain specific gene BPX|brain-specific protein, X-linked 20121230 -9606 4675 NAP1L3 RP1-32F7.3 MB20|NPL3 HGNC:7639|MIM:300117|Ensembl:ENSG00000186310|HPRD:02123|Vega:OTTHUMG00000021974 X Xq21.3-q22 nucleosome assembly protein 1-like 3 protein-coding NAP1L3 nucleosome assembly protein 1-like 3 O - 20121230 -9606 4676 NAP1L4 - NAP1L4b|NAP2|NAP2L|hNAP2 HGNC:7640|MIM:601651|Ensembl:ENSG00000205531|HPRD:11873|Vega:OTTHUMG00000011009 11 11p15.5 nucleosome assembly protein 1-like 4 protein-coding NAP1L4 nucleosome assembly protein 1-like 4 O NAP-2|nucleosome assembly protein 1-like 4b|nucleosome assembly protein 2 20121230 -9606 4677 NARS - ASNRS|NARS1 HGNC:7643|MIM:108410|Ensembl:ENSG00000134440|HPRD:00154|Vega:OTTHUMG00000180125 18 18q21.31 asparaginyl-tRNA synthetase protein-coding NARS asparaginyl-tRNA synthetase O asparagine tRNA ligase 1, cytoplasmic|asparagine--tRNA ligase, cytoplasmic|asparaginyl-tRNA synthetase, cytoplasmic 20121230 -9606 4678 NASP RP4-697E16.3 FLB7527|PRO1999 HGNC:7644|MIM:603185|Ensembl:ENSG00000132780|HPRD:04423|Vega:OTTHUMG00000007826 1 1p34.1 nuclear autoantigenic sperm protein (histone-binding) protein-coding NASP nuclear autoantigenic sperm protein (histone-binding) O histone H1-binding protein|nuclear autoantigenic sperm protein 20121230 -9606 4680 CEACAM6 - CD66c|CEAL|NCA HGNC:1818|MIM:163980|Ensembl:ENSG00000086548|HPRD:01233|Vega:OTTHUMG00000151064 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) protein-coding CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) O carcinoembryonic antigen-related cell adhesion molecule 6|non-specific crossreacting antigen|normal cross-reacting antigen 20121230 -9606 4681 NBL1 RP5-1056L3.4 D1S1733E|DAN|DAND1|NB|NO3 HGNC:7650|MIM:600613|Ensembl:ENSG00000158747|HPRD:09001|Vega:OTTHUMG00000002700 1 1p36.13 neuroblastoma, suppression of tumorigenicity 1 protein-coding NBL1 neuroblastoma, suppression of tumorigenicity 1 O DAN domain family member 1|differential screening-selected gene aberrant in neuroblastoma|neuroblastoma candidate region, suppression of tumorigenicity 1|neuroblastoma suppressor of tumorigenicity 1 20121230 -9606 4682 NUBP1 - NBP|NBP1 HGNC:8041|MIM:600280|Ensembl:ENSG00000103274|HPRD:02611|Vega:OTTHUMG00000129751 16 16p13.13 nucleotide binding protein 1 protein-coding NUBP1 nucleotide binding protein 1 O NBP 1|cytosolic Fe-S cluster assembly factor NUBP1|nucleotide binding protein (e.coli MinD like)|nucleotide binding protein 1 (E.coli MinD like)|nucleotide binding protein 1 (MinD homolog, E. coli)|nucleotide-binding protein 1 20121230 -9606 4683 NBN - AT-V1|AT-V2|ATV|NBS|NBS1|P95 HGNC:7652|MIM:602667|Ensembl:ENSG00000104320|HPRD:04050|Vega:OTTHUMG00000153546 8 8q21 nibrin protein-coding NBN nibrin O Nijmegen breakage syndrome 1 (nibrin)|cell cycle regulatory protein p95|p95 protein of the MRE11/RAD50 complex 20121230 -9606 4684 NCAM1 - CD56|MSK39|NCAM HGNC:7656|MIM:116930|Ensembl:ENSG00000149294|HPRD:00301|Vega:OTTHUMG00000167196 11 11q23.1 neural cell adhesion molecule 1 protein-coding NCAM1 neural cell adhesion molecule 1 O antigen recognized by monoclonal antibody 5.1H11|neural cell adhesion molecule, NCAM 20121230 -9606 4685 NCAM2 - NCAM21 HGNC:7657|MIM:602040|Ensembl:ENSG00000154654|HPRD:03619|Vega:OTTHUMG00000078121 21 21q21.1 neural cell adhesion molecule 2 protein-coding NCAM2 neural cell adhesion molecule 2 O N-CAM-2|NCAM-2 20121230 -9606 4686 NCBP1 RP11-546O6.1 CBP80|NCBP|Sto1 HGNC:7658|MIM:600469|Ensembl:ENSG00000136937|HPRD:02717|Vega:OTTHUMG00000020332 9 9q34.1 nuclear cap binding protein subunit 1, 80kDa protein-coding NCBP1 nuclear cap binding protein subunit 1, 80kDa O 80 kDa nuclear cap-binding protein|NCBP 80 kDa subunit|nuclear cap-binding protein subunit 1 20121230 -9606 4688 NCF2 RP1-127C7.5 NCF-2|NOXA2|P67-PHOX|P67PHOX HGNC:7661|MIM:608515|Ensembl:ENSG00000116701|HPRD:01991|Vega:OTTHUMG00000035329 1 1q25 neutrophil cytosolic factor 2 protein-coding NCF2 neutrophil cytosolic factor 2 O 67 kDa neutrophil oxidase factor|NADPH oxidase activator 2|chronic granulomatous disease, autosomal 2|neutrophil NADPH oxidase factor 2|neutrophil cytosol factor 2|neutrophil cytosolic factor 2 (65kD, chronic granulomatous disease, autosomal 2) 20121230 -9606 4689 NCF4 CTA-833B7.1 NCF|P40PHOX|SH3PXD4 HGNC:7662|MIM:601488|Ensembl:ENSG00000100365|HPRD:03289|Vega:OTTHUMG00000150548 22 22q13.1 neutrophil cytosolic factor 4, 40kDa protein-coding NCF4 neutrophil cytosolic factor 4, 40kDa O NCF-4|SH3 and PX domain-containing protein 4|neutrophil NADPH oxidase factor 4|neutrophil cytosol factor 4|p40-phox 20121230 -9606 4690 NCK1 - NCK|NCKalpha|nck-1 HGNC:7664|MIM:600508|Ensembl:ENSG00000158092|HPRD:02740|Vega:OTTHUMG00000159781 3 3q21 NCK adaptor protein 1 protein-coding NCK1 NCK adaptor protein 1 O NCK tyrosine kinase|SH2/SH3 adaptor protein NCK-alpha|cytoplasmic protein NCK1|melanoma NCK protein|non-catalytic region of tyrosine kinase 20121230 -9606 4691 NCL - C23 HGNC:7667|MIM:164035|Ensembl:ENSG00000115053|HPRD:01245|Vega:OTTHUMG00000153866 2 2q37.1 nucleolin protein-coding NCL nucleolin O - 20121230 -9606 4692 NDN - HsT16328|PWCR HGNC:7675|MIM:602117|Ensembl:ENSG00000182636|HPRD:03667|Vega:OTTHUMG00000129161 15 15q11.2-q12 necdin, melanoma antigen (MAGE) family member protein-coding NDN necdin, melanoma antigen (MAGE) family member O Prader-Willi syndrome chromosome region|necdin|necdin homolog 20121230 -9606 4693 NDP - EVR2|FEVR|ND HGNC:7678|MIM:300658|Ensembl:ENSG00000124479|HPRD:02404|Vega:OTTHUMG00000021391 X Xp11.4 Norrie disease (pseudoglioma) protein-coding NDP Norrie disease (pseudoglioma) O X-linked exudative vitreoretinopathy 2 protein|norrie disease protein|norrin 20121230 -9606 4694 NDUFA1 - CI-MWFE|MWFE|ZNF183 HGNC:7683|MIM:300078|Ensembl:ENSG00000125356|HPRD:02093|Vega:OTTHUMG00000022287 X Xq24 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa protein-coding NDUFA1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1|NADH oxidoreductase subunit MWFE|NADH-ubiquinone oxidoreductase MWFE subunit|NADH:ubiquinone oxidoreductase (complex 1)|complex I MWFE subunit|complex I-MWFE|type I dehydrogenase 20121230 -9606 4695 NDUFA2 - B8|CD14|CIB8 HGNC:7685|MIM:602137|Ensembl:ENSG00000131495|HPRD:11883|Vega:OTTHUMG00000129505 5 5q31.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa protein-coding NDUFA2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2|NADH-ubiquinone oxidoreductase subunit CI-B8|complex I B8 subunit 20121230 -9606 4696 NDUFA3 - B9|CI-B9 HGNC:7686|MIM:603832|Ensembl:ENSG00000170906|HPRD:04830|Vega:OTTHUMG00000064972 19 19q13.42 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa protein-coding NDUFA3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3|NADH-ubiquinone oxidoreductase B9 subunit|complex I B9 subunit|complex I-B9 20121230 -9606 4697 NDUFA4 - CI-9k|CI-MLRQ|MLRQ HGNC:7687|MIM:603833|Ensembl:ENSG00000189043|HPRD:04831|Vega:OTTHUMG00000023880 7 7p21.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa protein-coding NDUFA4 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa O Complex I 9kDa subunit|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4|NADH-ubiquinone oxidoreductase MLRQ subunit|complex I-MLRQ 20121230 -9606 4698 NDUFA5 - B13|CI-13KD-B|CI-13kB|NUFM|UQOR13 HGNC:7688|MIM:601677|Ensembl:ENSG00000128609|HPRD:03398|Vega:OTTHUMG00000157348 7 7q31.33 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa protein-coding NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa O Complex I-13KD-B|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5|NADH-ubiquinone oxidoreductase 13 kDa-B subunit|complex I 13kDa subunit B|complex I subunit B13|type I dehydrogenase|ubiquinone reductase 20121230 -9606 4699 NDUFA5P1 - - HGNC:7689 11 11p15 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, pseudogene 1 pseudo NDUFA5P1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, pseudogene 1 O - 20121209 -9606 4700 NDUFA6 - B14|CI-B14|LYRM6|NADHB14 HGNC:7690|MIM:602138|Ensembl:ENSG00000184983|HPRD:11884|Vega:OTTHUMG00000151287 22 22q13.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa protein-coding NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa O Complex I-B14|LYR motif-containing protein 6|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6|NADH-ubiquinone oxidoreductase 1 alpha subcomplex, 6|NADH-ubiquinone oxidoreductase B14 subunit|complex I B14 subunit 20121230 -9606 4701 NDUFA7 - B14.5a HGNC:7691|MIM:602139|Ensembl:ENSG00000167774|HPRD:11885 19 19p13.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa protein-coding NDUFA7 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa O CI-B14.5a|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7|NADH-ubiquinone oxidoreductase subunit B14.5a|complex I B14.5a subunit 20121230 -9606 4702 NDUFA8 - CI-19KD|CI-PGIV|PGIV HGNC:7692|MIM:603359|Ensembl:ENSG00000119421|HPRD:04525|Vega:OTTHUMG00000020598 9 9q33.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa protein-coding NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8|NADH-ubiquinone oxidoreductase 19 kDa subunit|NADH:ubiquinone oxidoreductase PGIV subunit|complex I PGIV subunit|complex I-19kD|complex I-PGIV 20121230 -9606 4703 NEB - NEB177D|NEM2 HGNC:7720|MIM:161650|Ensembl:ENSG00000183091|HPRD:01196|Vega:OTTHUMG00000153784 2 2q22 nebulin protein-coding NEB nebulin O nemaline myopathy type 2 20121230 -9606 4704 NDUFA9 - CC6|CI-39k|CI39k|NDUFS2L|SDR22E1 HGNC:7693|MIM:603834|Ensembl:ENSG00000139180|HPRD:04832|Vega:OTTHUMG00000168224 12 12p13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa protein-coding NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa O CI-39kD|NADH dehydrogenase (ubiquinone) Fe-S protein 2-like (NADH-coenzyme Q reductase)|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial|NADH-ubiquinone oxidoreductase 39 kDa subunit|complex I 39kDa subunit|short chain dehydrogenase/reductase family 22E, member 1 20121230 -9606 4705 NDUFA10 - CI-42KD|CI-42k HGNC:7684|MIM:603835|Ensembl:ENSG00000130414|HPRD:11950|Vega:OTTHUMG00000133350 2 2q37.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa protein-coding NDUFA10 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial|NADH-ubiquinone oxidoreductase 42 kDa subunit|complex I 42kDa subunit 20121230 -9606 4706 NDUFAB1 - ACP|FASN2A|SDAP HGNC:7694|MIM:603836|Ensembl:ENSG00000004779|HPRD:11951|Vega:OTTHUMG00000096985 16 16p12.2 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa protein-coding NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa O CI-SDAP|NADH-ubiquinone oxidoreductase 9.6 kDa subunit|NADH:ubiquinone oxidoreductase SDAP subunit|acyl carrier protein, mitochondrial|complex I SDAP subunit|mitochondrial acyl carrier protein 20121230 -9606 4707 NDUFB1 - CI-MNLL|CI-SGDH|MNLL HGNC:7695|MIM:603837|Ensembl:ENSG00000183648|HPRD:11952|Vega:OTTHUMG00000171180 14 14q32.12 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa protein-coding NDUFB1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1|NADH-ubiquinone oxidoreductase MNLL subunit|complex I MNLL subunit|complex I-MNLL 20121230 -9606 4708 NDUFB2 - AGGG|CI-AGGG HGNC:7697|MIM:603838|Ensembl:ENSG00000090266|HPRD:11953|Vega:OTTHUMG00000157424 7 7q34 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa protein-coding NDUFB2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial|NADH-ubiquinone oxidoreductase AGGG subunit|complex I AGGG subunit|complex I-AGGG 20121230 -9606 4709 NDUFB3 - B12|CI-B12 HGNC:7698|MIM:603839|Ensembl:ENSG00000119013|HPRD:11954|Vega:OTTHUMG00000132820 2 2q31.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa protein-coding NDUFB3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3|NADH-ubiquinone oxidoreductase B12 subunit|complex I-B12 20121230 -9606 4710 NDUFB4 - B15|CI-B15 HGNC:7699|MIM:603840|Ensembl:ENSG00000065518|HPRD:11955|Vega:OTTHUMG00000159442 3 3q13.33 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa protein-coding NDUFB4 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4|NADH-ubiquinone oxidoreductase B15 subunit|complex I B15 subunit|complex I-B15 20121230 -9606 4711 NDUFB5 - CISGDH|SGDH HGNC:7700|MIM:603841|Ensembl:ENSG00000136521|HPRD:11956|Vega:OTTHUMG00000157480 3 3q26.33 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa protein-coding NDUFB5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial|NADH-ubiquinone oxidoreductase SGDH subunit|complex I SGDH subunit|complex I-SGDH 20121230 -9606 4712 NDUFB6 RP11-205M20.6 B17|CI HGNC:7701|MIM:603322|Ensembl:ENSG00000165264|HPRD:04504|Vega:OTTHUMG00000019741 9 9p21.1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa protein-coding NDUFB6 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa O CI-B17|NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6|NADH-ubiquinone oxidoreductase B17 subunit|NADH-ubiquinone oxidoreductase beta subunit, 6|complex I, mitochondrial respiratory chain, B17 subunit|complex I-B17 20121230 -9606 4713 NDUFB7 - B18|CI-B18 HGNC:7702|MIM:603842|Ensembl:ENSG00000099795|HPRD:11957 19 19p13.12 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa protein-coding NDUFB7 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7|NADH-ubiquinone oxidoreductase B18 subunit|cell adhesion protein SQM1|complex I B18 subunit|complex I-B18 20121230 -9606 4714 NDUFB8 RP11-411B6.5 ASHI|CI-ASHI HGNC:7703|MIM:602140|Ensembl:ENSG00000166136|HPRD:11886|Vega:OTTHUMG00000019346 10 10q24.31 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa protein-coding NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial|NADH-ubiquinone oxidoreductase ASHI subunit|NADH:ubiquinone oxidoreductase ASHI subunit|complex I ASHI subunit|complex I-ASHI 20121230 -9606 4715 NDUFB9 - B22|LYRM3|UQOR22 HGNC:7704|MIM:601445|Ensembl:ENSG00000147684|HPRD:03264|Vega:OTTHUMG00000165054 8 8q13.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa protein-coding NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa O CI-B22|LYR motif-containing protein 3|NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9|NADH-ubiquinone oxidoreductase B22 subunit|complex I B22 subunit|complex I-B22 20121230 -9606 4716 NDUFB10 - PDSW HGNC:7696|MIM:603843|Ensembl:ENSG00000140990|HPRD:11958|Vega:OTTHUMG00000128709 16 16p13.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa protein-coding NDUFB10 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa O CI-PDSW|NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10|NADH ubiquinone oxidoreductase PDSW subunit (RH 16p13.3)|NADH-ubiquinone oxidoreductase PDSW subunit|complex I PDSW subunit|complex I-PDSW 20121230 -9606 4717 NDUFC1 - KFYI HGNC:7705|MIM:603844|Ensembl:ENSG00000109390|HPRD:11959|Vega:OTTHUMG00000133387 4 4q31.1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa protein-coding NDUFC1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa O CI-KFYI|NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial|NADH-ubiquinone oxidoreductase KFYI subunit|complex I KFYI subunit|complex I-KFYI 20121230 -9606 4718 NDUFC2 HLC1 B14.5b|CI-B14.5b|HLC-1|NADHDH2 HGNC:7706|MIM:603845|Ensembl:ENSG00000151366|HPRD:11960|Vega:OTTHUMG00000166614 11 11q14.1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa protein-coding NDUFC2 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa O NADH dehydrogenase [ubiquinone] 1 subunit C2|NADH-ubiquinone oxidoreductase subunit B14.5b|complex I subunit B14.5b|complex I-B14.5b|human lung cancer oncogene 1 protein 20121230 -9606 4719 NDUFS1 - CI-75Kd|CI-75k|PRO1304 HGNC:7707|MIM:157655|Ensembl:ENSG00000023228|HPRD:01145|Vega:OTTHUMG00000132892 2 2q33-q34 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) protein-coding NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) O NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial|complex I 75kDa subunit|complex I, mitochondrial respiratory chain, 75-kD subunit|mitochondrial NADH-ubiquinone oxidoreductase 75 kDa subunit 20121230 -9606 4720 NDUFS2 - CI-49 HGNC:7708|MIM:602985|Ensembl:ENSG00000158864|HPRD:04285|Vega:OTTHUMG00000034344 1 1q23 NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) protein-coding NDUFS2 NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) O CI-49kD|NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial|NADH-ubiquinone oxidoreductase 49 kDa subunit|NADH-ubiquinone oxidoreductase NDUFS2 subunit|complex 1, mitochondrial respiratory chain, 49-KD subunit|complex I 49kDa subunit|complex I-49kD 20121230 -9606 4722 NDUFS3 - CI-30 HGNC:7710|MIM:603846|Ensembl:ENSG00000213619|HPRD:10355|Vega:OTTHUMG00000166893 11 11p11.11 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) protein-coding NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) O CI-30kD|NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial|NADH dehydrogenase-ubiquinone 30 kDa subunit|NADH-ubiquinone oxidoreductase 30 kDa subunit|complex I 30kDa subunit|complex I-30kD 20121230 -9606 4723 NDUFV1 - CI-51K|CI51KD|UQOR1 HGNC:7716|MIM:161015|Ensembl:ENSG00000167792|HPRD:01191|Vega:OTTHUMG00000166215 11 11q13 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa protein-coding NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa O NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial|NADH-ubiquinone oxidoreductase 51 kDa subunit|complex I 51 kda subunit|complex I 51kDa subunit|complex I, mitochondrial respiratory chain|mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1|mitochondrial NADH:ubiquinone oxidoreductase 51 kda subunit 20121230 -9606 4724 NDUFS4 - AQDQ|CI-18 HGNC:7711|MIM:602694|Ensembl:ENSG00000164258|HPRD:04073|Vega:OTTHUMG00000096987 5 5q11.1 NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) protein-coding NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) O CI-18 kDa|CI-AQDQ|NADH dehydrogenase (ubiquinone) iron-sulfur protein 4|NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial|NADH-coenzyme Q reductase, 18-KD|NADH-ubiquinone oxidoreductase 18 kDa subunit|complex I 18kDa subunit|complex I-18 kDa|complex I-AQDQ|mitochondrial respiratory chain complex I (18-KD subunit) 20121230 -9606 4725 NDUFS5 RP11-781D11.3 CI-15k|CI15K HGNC:7712|MIM:603847|Ensembl:ENSG00000168653|HPRD:11961|Vega:OTTHUMG00000007497 1 1p34.2-p33 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) protein-coding NDUFS5 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) O CI-15 kDa|NADH dehydrogenase [ubiquinone] iron-sulfur protein 5|NADH:ubiquinone oxidoreductase 15 kDa IP subunit|complex I-15 kDa 20121230 -9606 4726 NDUFS6 - CI-13kA|CI-13kD-A|CI13KDA HGNC:7713|MIM:603848|Ensembl:ENSG00000145494|HPRD:10356|Vega:OTTHUMG00000090372 5 5p15.33 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) protein-coding NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) O NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial|NADH-ubiquinone oxidoreductase 13 kDa-A subunit|NADH:ubiquinone oxidoreductase NDUFS6 subunit|complex I 13kDa subunit A|complex I, mitochondrial respiratory chain, 13-kD subunit 20121230 -9606 4728 NDUFS8 - CI-23k|CI23KD|TYKY HGNC:7715|MIM:602141|Ensembl:ENSG00000110717|HPRD:03683|Vega:OTTHUMG00000167331 11 11q13 NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) protein-coding NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) O NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial|NADH-ubiquinone oxidoreductase 23 kDa subunit|complex I 23kDa subunit|complex I-23kD 20121230 -9606 4729 NDUFV2 - CI-24k HGNC:7717|MIM:600532|Ensembl:ENSG00000178127|HPRD:02757|Vega:OTTHUMG00000131593 18 18p11.22 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa O NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial|NADH dehydrogenase ubiquinone flavoprotein 2, mitochondrial|NADH-ubiquinone oxidoreductase 24 kDa subunit|NADH-ubiquinone oxidoreductase flavoprotein 2|complex I 24kDa subunit|complex I, mitochondrial respitory chain, 24 kD subunit|nuclear-encoded mitochondrial NADH-ubiquinone reductase 24Kd subunit 20121230 -9606 4730 NDUFV2P1 - - HGNC:7718 19 19q13.3-q13.4 NADH dehydrogenase (ubiquinone) flavoprotein 2 pseudogene 1 pseudo NDUFV2P1 NADH dehydrogenase (ubiquinone) flavoprotein 2 pseudogene 1 O - 20121230 -9606 4731 NDUFV3 - CI-10k|CI-9KD HGNC:7719|MIM:602184|Ensembl:ENSG00000160194|HPRD:03716|Vega:OTTHUMG00000086823 21 21q22.3 NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa protein-coding NDUFV3 NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa O NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial|NADH-ubiquinone oxidoreductase 9 kD subunit|NADH-ubiquinone oxidoreductase 9 kDa subunit|NADH-ubiquinone oxidoreductase flavoprotein 3, 10kD|complex I 10kDa subunit|complex I, mitochondrial respiratory chain, 10-kD subunit|complex I-9kD|mitochondrial NADH oxidoreductase-like protein|renal carcinoma antigen NY-REN-4 20121230 -9606 4733 DRG1 - NEDD3 HGNC:3029|MIM:603952|Ensembl:ENSG00000185721|HPRD:16034|Vega:OTTHUMG00000030792 22 22q12.2 developmentally regulated GTP binding protein 1 protein-coding DRG1 developmentally regulated GTP binding protein 1 O DRG-1|NEDD-3|developmentally regulated GTP-binding protein 1|developmentally-regulated GTP-binding protein 1|neural precursor cell expressed developmentally down-regulated protein 3|neural precursor cell expressed, developmentally down-regulated 3 20121230 -9606 4734 NEDD4 PIG53 NEDD4-1|RPF1 HGNC:7727|MIM:602278|Ensembl:ENSG00000069869|HPRD:03786|Vega:OTTHUMG00000132015 15 15q neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase NEDD4|NEDD-4|cell proliferation-inducing gene 53 protein|neural precursor cell expressed developmentally down-regulated protein 4|receptor-potentiating factor 1 20121230 -9606 4735 SEPT2 - DIFF6|NEDD5|Pnutl3|hNedd5 HGNC:7729|MIM:601506|Ensembl:ENSG00000168385|HPRD:03297|Vega:OTTHUMG00000133394 2 2q37 septin 2 protein-coding SEPT2 septin 2 O NEDD-5|neural precursor cell expressed developmentally down-regulated protein 5|neural precursor cell expressed, developmentally down-regulated 5|septin-2 20121230 -9606 4736 RPL10A - Csa-19|L10A|NEDD6 HGNC:10299|Ensembl:ENSG00000198755|HPRD:10199|Vega:OTTHUMG00000014566 6 6p21.31 ribosomal protein L10a protein-coding RPL10A ribosomal protein L10a O 60S ribosomal protein L10a|NEDD-6|neural precursor cell expressed developmentally down-regulated protein 6 20121230 -9606 4738 NEDD8 - NEDD-8 HGNC:7732|MIM:603171|Ensembl:ENSG00000129559|HPRD:04412|Vega:OTTHUMG00000029325 14 14q12 neural precursor cell expressed, developmentally down-regulated 8 protein-coding NEDD8 neural precursor cell expressed, developmentally down-regulated 8 O neddylin|ubiquitin-like protein Nedd8 20121230 -9606 4739 NEDD9 RP1-49G10.1 CAS-L|CAS2|CASL|CASS2|HEF1 HGNC:7733|MIM:602265|Ensembl:ENSG00000111859|HPRD:11888|Vega:OTTHUMG00000014255 6 6p25-p24 neural precursor cell expressed, developmentally down-regulated 9 protein-coding NEDD9 neural precursor cell expressed, developmentally down-regulated 9 O Cas scaffolding protein family member 2|Crk-associated substrate related protein Cas-L|Enhancer of filamentation 1 p55|cas-like docking|enhancer of filamentation 1|neural precursor cell expressed developmentally down-regulated protein 9|p130Cas-related protein|renal carcinoma antigen NY-REN-12 20121230 -9606 4741 NEFM - NEF3|NF-M|NFM HGNC:7734|MIM:162250|Ensembl:ENSG00000104722|HPRD:01205|Vega:OTTHUMG00000131990 8 8p21 neurofilament, medium polypeptide protein-coding NEFM neurofilament, medium polypeptide O 160 kDa neurofilament protein|neurofilament 3|neurofilament medium polypeptide|neurofilament triplet M protein|neurofilament, medium polypeptide 150kDa|neurofilament-3 (150 kD medium) 20121230 -9606 4744 NEFH - NFH HGNC:7737|MIM:162230|Ensembl:ENSG00000100285|HPRD:01204|Vega:OTTHUMG00000151155 22 22q12.2 neurofilament, heavy polypeptide protein-coding NEFH neurofilament, heavy polypeptide O 200 kDa neurofilament protein|NF-H|neurofilament heavy polypeptide|neurofilament triplet H protein|neurofilament, heavy polypeptide 200kDa 20121230 -9606 4745 NELL1 - IDH3GL|NRP1 HGNC:7750|MIM:602319|Ensembl:ENSG00000165973|HPRD:09081|Vega:OTTHUMG00000166042 11 11p15.1 NEL-like 1 (chicken) protein-coding NELL1 NEL-like 1 (chicken) O NEL-like protein 1|NELL-1 protein short isoform|nel-related protein 1|neural epidermal growth factor-like 1|protein kinase C-binding protein NELL1 20121230 -9606 4747 NEFL - CMT1F|CMT2E|NF-L|NF68|NFL HGNC:7739|MIM:162280|HPRD:01206 8 8p21 neurofilament, light polypeptide protein-coding NEFL neurofilament, light polypeptide O light molecular weight neurofilament protein|neurofilament light polypeptide|neurofilament protein, light chain|neurofilament subunit NF-L|neurofilament triplet L protein|neurofilament, light polypeptide 68kDa 20121230 -9606 4748 NEFLL1 - - HGNC:7740 2 2p12-q11 neurofilament, light polypeptide-like 1 protein-coding NEFLL1 neurofilament, light polypeptide-like 1 O - 20080828 -9606 4750 NEK1 - NY-REN-55|SRPS2 HGNC:7744|MIM:604588|Ensembl:ENSG00000137601|HPRD:06847|Vega:OTTHUMG00000160963 4 4q33 NIMA-related kinase 1 protein-coding NEK1 NIMA-related kinase 1 O NIMA (never in mitosis gene a)-related kinase 1|never in mitosis A-related kinase 1|nimA-related protein kinase 1|protein-serine/threonine kinase|renal carcinoma antigen NY-REN-55|serine/threonine-protein kinase Nek1 20121230 -9606 4751 NEK2 - HsPK21|NEK2A|NLK1 HGNC:7745|MIM:604043|Ensembl:ENSG00000117650|HPRD:04953|Vega:OTTHUMG00000037121 1 1q32.2-q41 NIMA-related kinase 2 protein-coding NEK2 NIMA-related kinase 2 O NIMA (never in mitosis gene a)-related kinase 2|nimA-like protein kinase 1|nimA-related protein kinase 2|serine/threonine-protein kinase Nek2 20121230 -9606 4752 NEK3 RP11-248G5.5 HSPK36 HGNC:7746|MIM:604044|Ensembl:ENSG00000136098|HPRD:04954|Vega:OTTHUMG00000016958 13 13q14.13 NIMA-related kinase 3 protein-coding NEK3 NIMA-related kinase 3 O HSPK 36|NIMA (never in mitosis gene a)-related kinase 3|glycogen synthase A kinase|hydroxyalkyl-protein kinase|never in mitosis A-related kinase 3|nimA-related protein kinase 3|phosphorylase B kinase kinase|serine/threonine-protein kinase Nek3 20121230 -9606 4753 NELL2 - NRP2 HGNC:7751|MIM:602320|Ensembl:ENSG00000184613|HPRD:11891|Vega:OTTHUMG00000169464 12 12q12 NEL-like 2 (chicken) protein-coding NELL2 NEL-like 2 (chicken) O NEL-like protein 2|NEL-related protein 2|neural epidermal growth factor-like 2|protein kinase C-binding protein NELL2 20121230 -9606 4756 NEO1 - IGDCC2|NGN HGNC:7754|MIM:601907|Ensembl:ENSG00000067141|HPRD:03549|Vega:OTTHUMG00000133509 15 15q22.3-q23 neogenin 1 protein-coding NEO1 neogenin 1 O immunoglobulin superfamily DCC subclass member 2|neogenin|neogenin homolog 1 20121230 -9606 4758 NEU1 DAAP-222I20.1 NANH|NEU|SIAL1 HGNC:7758|MIM:608272|Ensembl:ENSG00000204386|HPRD:09751|Vega:OTTHUMG00000031284 6 6p21.3 sialidase 1 (lysosomal sialidase) protein-coding NEU1 sialidase 1 (lysosomal sialidase) O G9 sialidase|N-acetyl-alpha-neuraminidase 1|acetylneuraminyl hydrolase|exo-alpha-sialidase|lysosomal sialidase|sialidase-1 20121230 -9606 4759 NEU2 - SIAL2 HGNC:7759|MIM:605528|Ensembl:ENSG00000115488|HPRD:05702|Vega:OTTHUMG00000133274 2 2q37 sialidase 2 (cytosolic sialidase) protein-coding NEU2 sialidase 2 (cytosolic sialidase) O N-acetyl-alpha-neuraminidase 2|cytosolic sialidase|neuraminidase 2|sialidase-2 20121230 -9606 4760 NEUROD1 - BETA2|BHF-1|MODY6|NEUROD|bHLHa3 HGNC:7762|MIM:601724|Ensembl:ENSG00000162992|HPRD:03428|Vega:OTTHUMG00000132583 2 2q32 neuronal differentiation 1 protein-coding NEUROD1 neuronal differentiation 1 O basic helix-loop-helix transcription factor|beta-cell E-box transactivator 2|class A basic helix-loop-helix protein 3|neurogenic differentiation factor 1|neurogenic helix-loop-helix protein NEUROD 20121230 -9606 4761 NEUROD2 - NDRF|bHLHa1 HGNC:7763|MIM:601725|Ensembl:ENSG00000171532|HPRD:03429|Vega:OTTHUMG00000133211 17 17q12 neuronal differentiation 2 protein-coding NEUROD2 neuronal differentiation 2 O class A basic helix-loop-helix protein 1|neuroD-related factor|neurogenic basic-helix-loop-helix protein|neurogenic differentiation 2|neurogenic differentiation factor 2 20121230 -9606 4762 NEUROG1 - AKA|Math4C|NEUROD3|bHLHa6|ngn1 HGNC:7764|MIM:601726|Ensembl:ENSG00000181965|HPRD:03430|Vega:OTTHUMG00000129138 5 5q23-q31 neurogenin 1 protein-coding NEUROG1 neurogenin 1 O NGN-1|class A basic helix-loop-helix protein 6|neurogenic basic-helix-loop-helix protein|neurogenic differentiation 3|neurogenic differentiation factor 3|neurogenin-1 20121230 -9606 4763 NF1 - NFNS|VRNF|WSS HGNC:7765|MIM:613113|Ensembl:ENSG00000196712|HPRD:01203|Vega:OTTHUMG00000132871 17 17q11.2 neurofibromin 1 protein-coding NF1 neurofibromin 1 O neurofibromatosis-related protein NF-1|neurofibromin 20121230 -9606 4764 NF1P3 - NF1L1 HGNC:7766 21 21q11.2 neurofibromin 1 pseudogene 3 pseudo NF1P3 neurofibromin 1 pseudogene 3 O - 20121230 -9606 4768 NF1P5 - NF1L5 HGNC:7770 18 18p11.21 neurofibromin 1 pseudogene 5 pseudo NF1P5 neurofibromin 1 pseudogene 5 O - 20121230 -9606 4771 NF2 - ACN|BANF|SCH HGNC:7773|MIM:607379|Ensembl:ENSG00000186575|HPRD:06980|Vega:OTTHUMG00000030727 22 22q12.2 neurofibromin 2 (merlin) protein-coding NF2 neurofibromin 2 (merlin) O merlin|moesin-ezrin-radixin like|moesin-ezrin-radixin-like protein|moesin-ezrin-radizin-like protein|neurofibromin 2 (bilateral acoustic neuroma)|neurofibromin-2|schwannomerlin|schwannomin 20121230 -9606 4772 NFATC1 - NF-ATC|NFAT2|NFATc HGNC:7775|MIM:600489|Ensembl:ENSG00000131196|HPRD:02729|Vega:OTTHUMG00000132897 18 18q23 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 protein-coding NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 O NF-ATc1|NFAT transcription complex cytosolic component|nuclear factor of activated T-cells, cytoplasmic 1 20121230 -9606 4773 NFATC2 RP5-1009H6.1 NFAT1|NFATP HGNC:7776|MIM:600490|Ensembl:ENSG00000101096|HPRD:02730|Vega:OTTHUMG00000032747 20 20q13.2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 O NF-ATc2|NFAT pre-existing subunit|NFAT transcription complex, preexisting component|T cell transcription factor NFAT1|T-cell transcription factor NFAT1|nuclear factor of activated T-cells, cytoplasmic 2|nuclear factor of activated T-cells, preexisting component|preexisting nuclear factor of activated T-cells 2 20121230 -9606 4774 NFIA RP5-902P15.1 CTF|NF-I/A|NF1-A|NFI-A|NFI-L HGNC:7784|MIM:600727|Ensembl:ENSG00000162599|HPRD:09007|Vega:OTTHUMG00000008618 1 1p31.3-p31.2 nuclear factor I/A protein-coding NFIA nuclear factor I/A O CCAAT-box-binding transcription factor|TGGCA-binding protein|nuclear factor 1 A-type 20121230 -9606 4775 NFATC3 - NFAT4|NFATX HGNC:7777|MIM:602698|Ensembl:ENSG00000072736|HPRD:04077|Vega:OTTHUMG00000137555 16 16q22.2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 protein-coding NFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 O NF-ATc3|T cell transcription factor NFAT4|nuclear factor of activated T-cells c3 isoform IE-Xa|nuclear factor of activated T-cells, cytoplasmic 3 20121230 -9606 4776 NFATC4 - NF-ATc4|NFAT3 HGNC:7778|MIM:602699|Ensembl:ENSG00000100968|HPRD:09096|Vega:OTTHUMG00000029351 14 14q11.2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 protein-coding NFATC4 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 O NF-AT3|T cell transcription factor NFAT3|T-cell transcription factor NFAT3|nuclear factor of activated T-cells, cytoplasmic 4 20121230 -9606 4778 NFE2 - NF-E2|p45 HGNC:7780|MIM:601490|Ensembl:ENSG00000123405|HPRD:09030|Vega:OTTHUMG00000169761 12 12q13 nuclear factor (erythroid-derived 2), 45kDa protein-coding NFE2 nuclear factor (erythroid-derived 2), 45kDa O leucine zipper protein NF-E2|nuclear factor, erythroid-derived 2 45 kDa subunit|p45 NF-E2|transcription factor NF-E2 45 kDa subunit 20121230 -9606 4779 NFE2L1 - LCR-F1|NRF1|TCF11 HGNC:7781|MIM:163260|Ensembl:ENSG00000082641|HPRD:01223|Vega:OTTHUMG00000178706 17 17q21.3 nuclear factor (erythroid-derived 2)-like 1 protein-coding NFE2L1 nuclear factor (erythroid-derived 2)-like 1 O NF-E2-related factor 1|NFE2-related factor 1|TCF-11|locus control region-factor 1|nuclear factor erythroid 2-related factor 1|nuclear factor, erythroid derived 2, like 1|transcription factor 11 (basic leucine zipper type)|transcription factor HBZ17|transcription factor LCR-F1 20121230 -9606 4780 NFE2L2 - NRF2 HGNC:7782|MIM:600492|Ensembl:ENSG00000116044|HPRD:02732|Vega:OTTHUMG00000133620 2 2q31 nuclear factor (erythroid-derived 2)-like 2 protein-coding NFE2L2 nuclear factor (erythroid-derived 2)-like 2 O HEBP1|NF-E2-related factor 2|NFE2-related factor 2|nuclear factor erythroid 2-related factor 2|nuclear factor erythroid-derived 2-like 2|nuclear factor, erythroid derived 2, like 2 20121230 -9606 4781 NFIB RP11-280O24.2 CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 HGNC:7785|MIM:600728|Ensembl:ENSG00000147862|HPRD:09008|Vega:OTTHUMG00000021027 9 9p24.1 nuclear factor I/B protein-coding NFIB nuclear factor I/B O CCAAT-box-binding transcription factor|TGGCA-binding protein|nuclear factor 1 B-type|nuclear factor 1/B 20121230 -9606 4782 NFIC - CTF|CTF5|NF-I|NFI HGNC:7786|MIM:600729|Ensembl:ENSG00000141905|Vega:OTTHUMG00000180731 19 19p13.3 nuclear factor I/C (CCAAT-binding transcription factor) protein-coding NFIC nuclear factor I/C (CCAAT-binding transcription factor) O CCAAT-box-binding transcription factor|NF-I/C|NF1-C|TGGCA-binding protein|nuclear factor 1 C-type 20121230 -9606 4783 NFIL3 - E4BP4|IL3BP1|NF-IL3A|NFIL3A HGNC:7787|MIM:605327|Ensembl:ENSG00000165030|HPRD:05619|Vega:OTTHUMG00000020209 9 9q22 nuclear factor, interleukin 3 regulated protein-coding NFIL3 nuclear factor, interleukin 3 regulated O E4 promoter-binding protein 4|interleukin-3 promoter transcriptional activator|interleukin-3-binding protein 1|nuclear factor interleukin 3 regulated protein|nuclear factor interleukin-3-regulated protein|transcriptional activator NF-IL3A 20121230 -9606 4784 NFIX - MRSHSS|NF1A|SOTOS2 HGNC:7788|MIM:164005|Ensembl:ENSG00000008441|HPRD:01234|Vega:OTTHUMG00000180726 19 19p13.3 nuclear factor I/X (CCAAT-binding transcription factor) protein-coding NFIX nuclear factor I/X (CCAAT-binding transcription factor) O CCAAT-box-binding transcription factor|CTF|NF-I/X|NF1-X|TGGCA-binding protein|nuclear factor 1 X-type|nuclear factor 1/X 20121230 -9606 4790 NFKB1 - EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 HGNC:7794|MIM:164011|Ensembl:ENSG00000109320|HPRD:01238|Vega:OTTHUMG00000161080 4 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 protein-coding NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 O DNA binding factor KBF1|DNA-binding factor KBF1|NF-kappabeta|nuclear factor NF-kappa-B p105 subunit|nuclear factor NF-kappa-B p50 subunit|nuclear factor kappa-B DNA binding subunit 20121230 -9606 4791 NFKB2 - H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 HGNC:7795|MIM:164012|Ensembl:ENSG00000077150|HPRD:01239|Vega:OTTHUMG00000018962 10 10q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) O DNA-binding factor KBF2|lymphocyte translocation chromosome 10 protein|nuclear factor NF-kappa-B p100 subunit|nuclear factor of kappa light chain gene enhancer in B-cells 2|oncogene Lyt-10 20121230 -9606 4792 NFKBIA - IKBA|MAD-3|NFKBI HGNC:7797|MIM:164008|Ensembl:ENSG00000100906|HPRD:01235|Vega:OTTHUMG00000140220 14 14q13 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha O I-kappa-B-alpha|IkappaBalpha|NF-kappa-B inhibitor alpha|ikB-alpha|major histocompatibility complex enhancer-binding protein MAD3|nuclear factor of kappa light chain gene enhancer in B-cells 20121230 -9606 4793 NFKBIB - IKBB|TRIP9 HGNC:7798|MIM:604495|Ensembl:ENSG00000104825|HPRD:07260|Vega:OTTHUMG00000177631 19 19q13.1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta protein-coding NFKBIB nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta O I-kappa-B-beta|NF-kappa-B inhibitor beta|NF-kappa-BIB|TR-interacting protein 9|TRIP-9|ikB-B|ikB-beta|ikappaBbeta|thyroid receptor-interacting protein 9 20121230 -9606 4794 NFKBIE RP1-302G2.2 IKBE HGNC:7799|MIM:604548|Ensembl:ENSG00000146232|HPRD:05181|Vega:OTTHUMG00000014762 6 6p21.1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon protein-coding NFKBIE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon O I-kappa-B-epsilon|NF-kappa-B inhibitor epsilon|NF-kappa-BIE|ikB-E|ikB-epsilon|ikappaBepsilon 20121230 -9606 4795 NFKBIL1 DADB-70P7.2 IKBL|LST1|NFKBIL HGNC:7800|MIM:601022|Ensembl:ENSG00000204498|HPRD:07043|Vega:OTTHUMG00000031038 6 6p21.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 protein-coding NFKBIL1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 O I-kappa-B-like protein|NF-kappa-B inhibitor-like protein 1|ikappaBL|inhibitor of kappa B-like protein 20121230 -9606 4796 TONSL - IKBR|NFKBIL2 HGNC:7801|MIM:604546|Ensembl:ENSG00000160949|HPRD:05180|Vega:OTTHUMG00000153122 8 8q24.3 tonsoku-like, DNA repair protein protein-coding TONSL tonsoku-like, DNA repair protein O I-kappa-B-related protein|NF-kappa-B inhibitor-like protein 2|ikappaBR|inhibitor of kappa B-related protein|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2|tonsoku-like protein 20121230 -9606 4798 NFRKB - INO80G HGNC:7802|MIM:164013|Ensembl:ENSG00000170322|HPRD:01240|Vega:OTTHUMG00000165761 11 11q24-q25 nuclear factor related to kappaB binding protein protein-coding NFRKB nuclear factor related to kappaB binding protein O DNA-binding protein R kappa B|DNA-binding protein R kappa-B|INO80 complex subunit G|nuclear factor related to kappa-B-binding protein 20121230 -9606 4799 NFX1 - NFX2 HGNC:7803|MIM:603255|Ensembl:ENSG00000086102|HPRD:11936|Vega:OTTHUMG00000019772 9 9p13.3 nuclear transcription factor, X-box binding 1 protein-coding NFX1 nuclear transcription factor, X-box binding 1 O nuclear transcription factor, X box-binding protein 1|transcriptional repressor NF-X1 20121230 -9606 4800 NFYA - CBF-A|CBF-B|HAP2|NF-YA HGNC:7804|MIM:189903|Ensembl:ENSG00000001167|HPRD:01793|Vega:OTTHUMG00000014669 6 6p21.3 nuclear transcription factor Y, alpha protein-coding NFYA nuclear transcription factor Y, alpha O CAAT box DNA-binding protein subunit A|CAAT-box DNA binding protein subunit A|CCAAT-binding transcription factor subunit B|HAP2 CCAAT-binding protein|Transcription factor NF-Y, A subunit|nuclear transcription factor Y subunit A|nuclear transcription factor Y subunit alpha 20121230 -9606 4801 NFYB - CBF-A|CBF-B|HAP3|NF-YB HGNC:7805|MIM:189904|Ensembl:ENSG00000120837|HPRD:01794|Vega:OTTHUMG00000170176 12 12q22-q23 nuclear transcription factor Y, beta protein-coding NFYB nuclear transcription factor Y, beta O CAAT box DNA-binding protein subunit B|CCAAT-binding transcription factor subunit A|Transcription factor NF-Y, B subunit|nuclear transcription factor Y subunit B|nuclear transcription factor Y subunit beta 20121230 -9606 4802 NFYC RP5-1066H13.1 CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC HGNC:7806|MIM:605344|Ensembl:ENSG00000066136|Vega:OTTHUMG00000007729 1 1p32 nuclear transcription factor Y, gamma protein-coding NFYC nuclear transcription factor Y, gamma O CAAT box DNA-binding protein subunit C|CCAAT binding factor subunit C|CCAAT transcription binding factor subunit gamma|histone H1 transcription factor large subunit 2A|nuclear transcription factor Y subunit C|nuclear transcription factor Y subunit gamma|transactivator HSM-1|transactivator HSM-1/2|transcription factor NF-Y, C subunit 20121230 -9606 4803 NGF - Beta-NGF|HSAN5|NGFB HGNC:7808|MIM:162030|Ensembl:ENSG00000134259|HPRD:08874|Vega:OTTHUMG00000011880 1 1p13.1 nerve growth factor (beta polypeptide) protein-coding NGF nerve growth factor (beta polypeptide) O beta-nerve growth factor|nerve growth factor, beta subunit 20121230 -9606 4804 NGFR - CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR HGNC:7809|MIM:162010|Ensembl:ENSG00000064300|HPRD:01197|Vega:OTTHUMG00000161495 17 17q21-q22 nerve growth factor receptor protein-coding NGFR nerve growth factor receptor O NGF receptor|TNFR superfamily, member 16|low affinity nerve growth factor receptor|low affinity neurotrophin receptor p75NTR|low-affinity nerve growth factor receptor|p75 ICD|tumor necrosis factor receptor superfamily member 16 20121230 -9606 4805 NHCP1 - - HGNC:7811|MIM:118870 16 - non-histone chromosome protein 1 unknown NHCP1 non-histone chromosome protein 1 O - 20080828 -9606 4807 NHLH1 RP11-517F10.2 HEN1|NSCL|NSCL1|bHLHa35 HGNC:7817|MIM:162360|Ensembl:ENSG00000171786|HPRD:01212|Vega:OTTHUMG00000033121 1 1q22 nescient helix loop helix 1 protein-coding NHLH1 nescient helix loop helix 1 O HEN-1|NSCL-1|class A basic helix-loop-helix protein 35|helix-loop-helix protein 1 20121230 -9606 4808 NHLH2 RP11-485H8.1 HEN2|NSCL2|bHLHa34 HGNC:7818|MIM:162361|Ensembl:ENSG00000177551|HPRD:01213|Vega:OTTHUMG00000011969 1 1p12-p11 nescient helix loop helix 2 protein-coding NHLH2 nescient helix loop helix 2 O HEN-2|NSCL-2|class A basic helix-loop-helix protein 34|helix-loop-helix protein 2 20121230 -9606 4809 NHP2L1 CTA-216E10.8 15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1 HGNC:7819|MIM:601304|Ensembl:ENSG00000100138|HPRD:03197|Vega:OTTHUMG00000151189 22 22q13 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) protein-coding NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) O NHP2-like protein 1|U4/U6.U5 tri-snRNP 15.5 kDa protein|[U4/U6.U5] tri-snRNP 15.5 kD RNA binding protein|high mobility group-like nuclear protein 2 homolog 1|non-histone chromosome protein 2-like 1|small nuclear ribonucleoprotein 15.5kDa (U4/U6.U5)|sperm specific antigen 1 20121230 -9606 4810 NHS RP3-389A20.6 CXN|SCML1 HGNC:7820|MIM:300457|Ensembl:ENSG00000188158|HPRD:02351|Vega:OTTHUMG00000022799 X Xp22.13 Nance-Horan syndrome (congenital cataracts and dental anomalies) protein-coding NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) O Nance-Horan syndrome protein|congenital cataracts and dental anomalies protein 20121230 -9606 4811 NID1 - NID HGNC:7821|MIM:131390|Ensembl:ENSG00000116962|HPRD:00574|Vega:OTTHUMG00000040071 1 1q43 nidogen 1 protein-coding NID1 nidogen 1 O NID-1|enactin|entactin|nidogen-1 20121230 -9606 4812 NIDDM1 - - HGNC:7822|MIM:601283 2 2q non-insulin-dependent diabetes mellitus (common, type 2) 1 unknown NIDDM1 non-insulin-dependent diabetes mellitus (common, type 2) 1 O - 20110215 -9606 4813 NIDDM2 - - HGNC:7823|MIM:601407 12 12q24.2 non-insulin-dependent diabetes mellitus (common, type 2) 2 unknown NIDDM2 non-insulin-dependent diabetes mellitus (common, type 2) 2 O - 20120622 -9606 4814 NINJ1 - NIN1|NINJURIN HGNC:7824|MIM:602062|Ensembl:ENSG00000131669|HPRD:03639|Vega:OTTHUMG00000020242 9 9q22 ninjurin 1 protein-coding NINJ1 ninjurin 1 O nerve injury-induced protein 1|nerve injury-induced protein-1|ninjurin-1 20121230 -9606 4815 NINJ2 - - HGNC:7825|MIM:607297|Ensembl:ENSG00000171840|HPRD:09530|Vega:OTTHUMG00000090311 12 12p13 ninjurin 2 protein-coding NINJ2 ninjurin 2 O nerve injury-induced protein 2|ninjurin-2 20121230 -9606 4817 NIT1 - - HGNC:7828|MIM:604618|Ensembl:ENSG00000158793|HPRD:07056|Vega:OTTHUMG00000031473 1 1q21-q22 nitrilase 1 protein-coding NIT1 nitrilase 1 O nitrilase homolog 1 20121230 -9606 4818 NKG7 - GIG1|GMP-17|p15-TIA-1 HGNC:7830|MIM:606008|Ensembl:ENSG00000105374|HPRD:16188 19 19q13.41 natural killer cell group 7 sequence protein-coding NKG7 natural killer cell group 7 sequence O G-CSF-induced gene 1 protein|GIG-1 protein|granule membrane protein of 17 kDa|natural killer cell protein 7|protein NKG7 20121230 -9606 4819 NKS1 - EC-1|EC1 HGNC:7832|MIM:272370 6 6p21.3 natural killer cell susceptibility 1 unknown NKS1 natural killer cell susceptibility 1 O - 20110215 -9606 4820 NKTR - p104 HGNC:7833|MIM:161565|Ensembl:ENSG00000114857|HPRD:01195|Vega:OTTHUMG00000133037 3 3p23-p21 natural killer-tumor recognition sequence protein-coding NKTR natural killer-tumor recognition sequence O NK-TR protein|NK-tumor recognition protein|natural killer triggering receptor|natural-killer cells cyclophilin-related protein 20121230 -9606 4821 NKX2-2 - NKX2.2|NKX2B HGNC:7835|MIM:604612|Ensembl:ENSG00000125820|HPRD:05213|Vega:OTTHUMG00000170524 20 20p11.22 NK2 homeobox 2 protein-coding NKX2-2 NK2 homeobox 2 O NK-2 homolog B|NK2 transcription factor related, locus 2|NK2 transcription factor-like protein B|homeobox protein NK-2 homolog B|homeobox protein Nkx-2.2 20121230 -9606 4824 NKX3-1 - BAPX2|NKX3|NKX3.1|NKX3A HGNC:7838|MIM:602041|Ensembl:ENSG00000167034|HPRD:03620|Vega:OTTHUMG00000097851 8 8p21.2 NK3 homeobox 1 protein-coding NKX3-1 NK3 homeobox 1 O NK homeobox, family 3, A|NK3 transcription factor homolog A|NK3 transcription factor related, locus 1|homeobox protein NK-3 homolog A|homeobox protein Nkx-3.1 20121230 -9606 4825 NKX6-1 - NKX6.1|NKX6A HGNC:7839|MIM:602563|Ensembl:ENSG00000163623|HPRD:09092|Vega:OTTHUMG00000130426 4 4q21.33 NK6 homeobox 1 protein-coding NKX6-1 NK6 homeobox 1 O NK homeo box, family 6, member A|NK homeobox, family 6, A|NK6 transcription factor homolog A|NK6 transcription factor related, locus 1|homeobox protein NK-6 homolog A|homeobox protein Nkx-6.1 20121230 -9606 4826 NNAT - Peg5 HGNC:7860|MIM:603106|Ensembl:ENSG00000053438|HPRD:04377|Vega:OTTHUMG00000032420 20 20q11.2-q12 neuronatin protein-coding NNAT neuronatin O - 20121230 -9606 4827 NM - GP130|NCR HGNC:7841|MIM:162820 7 7q22-qter neutrophil migration unknown NM neutrophil migration O - 20120722 -9606 4828 NMB - - HGNC:7842|MIM:162340|Ensembl:ENSG00000197696|HPRD:01210|Vega:OTTHUMG00000148666 15 15q22-qter neuromedin B protein-coding NMB neuromedin B O neuromedin-B 20121230 -9606 4829 NMBR - - HGNC:7843|MIM:162341|Ensembl:ENSG00000135577|HPRD:01211|Vega:OTTHUMG00000015704 6 6q21-qter neuromedin B receptor protein-coding NMBR neuromedin B receptor O NMB-R|epididymis tissue protein Li 185a|neuromedin-B receptor|neuromedin-B-preferring bombesin receptor 20121230 -9606 4830 NME1 - AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1 HGNC:7849|MIM:156490|Ensembl:ENSG00000239672|HPRD:01131|Vega:OTTHUMG00000137474 17 17q21.3 NME/NM23 nucleoside diphosphate kinase 1 protein-coding NME1 NME/NM23 nucleoside diphosphate kinase 1 O NDP kinase A|granzyme A-activated DNase|metastasis inhibition factor nm23|non-metastatic cells 1, protein (NM23A) expressed in|nucleoside diphosphate kinase A|tumor metastatic process-associated protein 20121230 -9606 4831 NME2 - NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF HGNC:7850|MIM:156491|Ensembl:ENSG00000011052|Ensembl:ENSG00000243678|HPRD:01132|Vega:OTTHUMG00000154062 17 17q21.3 NME/NM23 nucleoside diphosphate kinase 2 protein-coding NME2 NME/NM23 nucleoside diphosphate kinase 2 O NDP kinase B|c-myc purine-binding transcription factor PUF|c-myc transcription factor|histidine protein kinase NDKB|non-metastatic cells 2, protein (NM23) expressed in|non-metastatic cells 2, protein (NM23B) expressed in|nucleoside diphosphate kinase B|nucleotide diphosphate kinase B 20121230 -9606 4832 NME3 - DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2 HGNC:7851|MIM:601817|Ensembl:ENSG00000103024|HPRD:03488|Vega:OTTHUMG00000128635 16 16q13.3 NME/NM23 nucleoside diphosphate kinase 3 protein-coding NME3 NME/NM23 nucleoside diphosphate kinase 3 O NDK 3|NDP kinase 3|NDP kinase C|non-metastatic cells 3, protein expressed in|nucleoside diphosphate kinase 3|nucleoside diphosphate kinase C 20121230 -9606 4833 NME4 Z97634.4-011 NDPK-D|NM23H4|nm23-H4 HGNC:7852|MIM:601818|Ensembl:ENSG00000103202|HPRD:03489|Vega:OTTHUMG00000047995 16 16p13.3 NME/NM23 nucleoside diphosphate kinase 4 protein-coding NME4 NME/NM23 nucleoside diphosphate kinase 4 O NDK|NDP kinase D|NDP kinase, mitochondrial|NDPKD|non-metastatic cells 4, protein expressed in|nucleoside diphosphate kinase D|nucleoside diphosphate kinase, mitochondrial 20121230 -9606 4835 NQO2 RP1-90J20.3 DHQV|DIA6|NMOR2|QR2 HGNC:7856|MIM:160998|Ensembl:ENSG00000124588|HPRD:01190|Vega:OTTHUMG00000014130 6 6p25.2 NAD(P)H dehydrogenase, quinone 2 protein-coding NQO2 NAD(P)H dehydrogenase, quinone 2 O NAD(P)H menadione oxidoreductase 2, dioxin-inducible|NAD(P)H menadione oxidoreductase-1, dioxin-inducible-2|NRH dehydrogenase [quinone] 2|NRH:quinone oxidoreductase 2|quinone reductase 2|ribosyldihydronicotinamide dehydrogenase|ribosyldihydronicotinamide dehydrogenase [quinone] 20121230 -9606 4836 NMT1 - NMT HGNC:7857|MIM:160993|Ensembl:ENSG00000136448|HPRD:01187|Vega:OTTHUMG00000180003 17 17q21.31 N-myristoyltransferase 1 protein-coding NMT1 N-myristoyltransferase 1 O NMT 1|alternative, short form NMT-S|glycylpeptide N-tetradecanoyltransferase 1|long form, NMT-L|myristoyl-CoA:protein N-myristoyltransferase 1|peptide N-myristoyltransferase 1|type I N-myristoyltransferase 20121230 -9606 4837 NNMT - - HGNC:7861|MIM:600008|Ensembl:ENSG00000166741|HPRD:02478|Vega:OTTHUMG00000168245 11 11q23.1 nicotinamide N-methyltransferase protein-coding NNMT nicotinamide N-methyltransferase O - 20121230 -9606 4838 NODAL - HTX5 HGNC:7865|MIM:601265|Ensembl:ENSG00000156574|HPRD:08370|Vega:OTTHUMG00000018408 10 10q22.1 nodal growth differentiation factor protein-coding NODAL nodal growth differentiation factor O nodal homolog 20121230 -9606 4839 NOP2 - NOL1|NOP120|NSUN1|p120 HGNC:7867|MIM:164031|Ensembl:ENSG00000111641|HPRD:01244|Vega:OTTHUMG00000169163 12 12p13 NOP2 nucleolar protein protein-coding NOP2 NOP2 nucleolar protein O NOL1/NOP2/Sun domain family, member 1|NOP2 nucleolar protein homolog|nucleolar protein 1, 120kDa|nucleolar protein 2 homolog|proliferating-cell nucleolar antigen p120|proliferation-associated nucleolar protein p120|putative ribosomal RNA methyltransferase NOP2 20121230 -9606 4841 NONO - NMT55|NRB54|P54|P54NRB HGNC:7871|MIM:300084|Ensembl:ENSG00000147140|HPRD:02098|Vega:OTTHUMG00000021798 X Xq13.1 non-POU domain containing, octamer-binding protein-coding NONO non-POU domain containing, octamer-binding O 54 kDa nuclear RNA- and DNA-binding protein|55 kDa nuclear protein|DNA-binding p52/p100 complex, 52 kDa subunit|non-POU domain-containing octamer (ATGCAAAT) binding protein|non-POU domain-containing octamer-binding protein|p54(nrb) 20121230 -9606 4842 NOS1 - IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS HGNC:7872|MIM:163731|Ensembl:ENSG00000089250|HPRD:01226|Vega:OTTHUMG00000137376 12 12q24.2-q24.31 nitric oxide synthase 1 (neuronal) protein-coding NOS1 nitric oxide synthase 1 (neuronal) O NOS type I|constitutive NOS|neuronal NOS|nitric oxide synthase, brain|peptidyl-cysteine S-nitrosylase NOS1 20121230 -9606 4843 NOS2 - HEP-NOS|INOS|NOS|NOS2A HGNC:7873|MIM:163730|Ensembl:ENSG00000007171|HPRD:01225|Vega:OTTHUMG00000132445 17 17q11.2-q12 nitric oxide synthase 2, inducible protein-coding NOS2 nitric oxide synthase 2, inducible O NOS type II|NOS, type II|hepatocyte NOS|inducible NO synthase|inducible NOS|nitric oxide synthase 2A (inducible, hepatocytes)|nitric oxide synthase, inducible|nitric oxide synthase, macrophage|peptidyl-cysteine S-nitrosylase NOS2 20121230 -9606 4846 NOS3 - ECNOS|eNOS HGNC:7876|MIM:163729|Ensembl:ENSG00000164867|HPRD:01224|Vega:OTTHUMG00000158343 7 7q36 nitric oxide synthase 3 (endothelial cell) protein-coding NOS3 nitric oxide synthase 3 (endothelial cell) O EC-NOS|NOS type III|NOSIII|cNOS|constitutive NOS|endothelial NOS|nitric oxide synthase, endothelial 20121230 -9606 4848 CNOT2 HSPC131 CDC36|NOT2|NOT2H HGNC:7878|MIM:604909|Ensembl:ENSG00000111596|HPRD:05367|Vega:OTTHUMG00000169481 12 12q15 CCR4-NOT transcription complex, subunit 2 protein-coding CNOT2 CCR4-NOT transcription complex, subunit 2 O CCR4-NOT transcription complex subunit 2|CCR4-associated factor 2|negative regulator of transcription 2 20121230 -9606 4849 CNOT3 XXbac-BCX105G6.1 LENG2|NOT3|NOT3H HGNC:7879|MIM:604910|Ensembl:ENSG00000088038|HPRD:05368|Vega:OTTHUMG00000066468 19 19q13.4 CCR4-NOT transcription complex, subunit 3 protein-coding CNOT3 CCR4-NOT transcription complex, subunit 3 O CCR4-NOT transcription complex subunit 3|CCR4-associated factor 3|NOT3 (negative regulator of transcription 3, yeast) homolog|leukocyte receptor cluster member 2 20121230 -9606 4850 CNOT4 - CLONE243|NOT4|NOT4H HGNC:7880|MIM:604911|Ensembl:ENSG00000080802|HPRD:05369|Vega:OTTHUMG00000155568 7 7q22-qter CCR4-NOT transcription complex, subunit 4 protein-coding CNOT4 CCR4-NOT transcription complex, subunit 4 O CCR4-NOT transcription complex subunit 4|CCR4-associated factor 4|E3 ubiquitin-protein ligase CNOT4|NOT4 (negative regulator of transcription 4, yeast) homolog|potential transcriptional repressor NOT4Hp 20121230 -9606 4851 NOTCH1 - TAN1|hN1 HGNC:7881|MIM:190198|Ensembl:ENSG00000148400|HPRD:01827|Vega:OTTHUMG00000020935 9 9q34.3 notch 1 protein-coding NOTCH1 notch 1 O Notch homolog 1, translocation-associated|neurogenic locus notch homolog protein 1|translocation-associated notch protein TAN-1 20121230 -9606 4852 NPY - PYY4 HGNC:7955|MIM:162640|Ensembl:ENSG00000122585|HPRD:01214|Vega:OTTHUMG00000022973 7 7p15.1 neuropeptide Y protein-coding NPY neuropeptide Y O pro-neuropeptide Y 20121230 -9606 4853 NOTCH2 - AGS2|HJCYS|hN2 HGNC:7882|MIM:600275|Ensembl:ENSG00000134250|HPRD:02606|Vega:OTTHUMG00000012177 1 1p13-p11 notch 2 protein-coding NOTCH2 notch 2 O Notch homolog 2|neurogenic locus notch homolog protein 2 20121230 -9606 4854 NOTCH3 - CADASIL|CASIL HGNC:7883|MIM:600276|Ensembl:ENSG00000074181|HPRD:02607 19 19p13.2-p13.1 notch 3 protein-coding NOTCH3 notch 3 O Notch homolog 3|neurogenic locus notch homolog protein 3 20121230 -9606 4855 NOTCH4 DAQB-143M3.4 INT3|NOTCH3 HGNC:7884|MIM:164951|Ensembl:ENSG00000204301|HPRD:01290|Vega:OTTHUMG00000031044 6 6p21.3 notch 4 protein-coding NOTCH4 notch 4 O Notch homolog 4|neurogenic locus notch homolog protein 4 20121230 -9606 4856 NOV - CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh HGNC:7885|MIM:164958|Ensembl:ENSG00000136999|HPRD:01291|Vega:OTTHUMG00000164984 8 8q24.1 nephroblastoma overexpressed protein-coding NOV nephroblastoma overexpressed O CCN family member 3|IGF-binding protein 9|insulin-like growth factor-binding protein 9|nephroblastoma-overexpressed gene protein homolog|protein NOV homolog 20121230 -9606 4857 NOVA1 - Nova-1 HGNC:7886|MIM:602157|Ensembl:ENSG00000139910|HPRD:03693|Vega:OTTHUMG00000029385 14 14q neuro-oncological ventral antigen 1 protein-coding NOVA1 neuro-oncological ventral antigen 1 O RNA-binding protein Nova-1|onconeural ventral antigen 1|paraneoplastic Ri antigen|ventral neuron-specific protein 1 20121230 -9606 4858 NOVA2 - ANOVA|NOVA3 HGNC:7887|MIM:601991|Ensembl:ENSG00000104967|HPRD:03588|Vega:OTTHUMG00000177499 19 19q13.3 neuro-oncological ventral antigen 2 protein-coding NOVA2 neuro-oncological ventral antigen 2 O RNA-binding protein Nova-2|astrocytic NOVA1-like RNA-binding protein|neuro-oncological ventral antigen 3 20121230 -9606 4860 PNP - NP|PRO1837|PUNP HGNC:7892|MIM:164050|Ensembl:ENSG00000198805|HPRD:01247|Vega:OTTHUMG00000029546 14 14q13.1 purine nucleoside phosphorylase protein-coding PNP purine nucleoside phosphorylase O inosine phosphorylase|inosine-guanosine phosphorylase|purine-nucleoside:orthophosphate ribosyltransferase 20121230 -9606 4861 NPAS1 - MOP5|PASD5|bHLHe11 HGNC:7894|MIM:603346|Ensembl:ENSG00000130751|HPRD:09136 19 19q13.2-q13.3 neuronal PAS domain protein 1 protein-coding NPAS1 neuronal PAS domain protein 1 O PAS domain-containing protein 5|basic-helix-loop-helix-PAS protein MOP5|class E basic helix-loop-helix protein 11|member of PAS protein 5|member of PAS superfamily 5|neuronal PAS domain-containing protein 1|neuronal PAS1 20121230 -9606 4862 NPAS2 - MOP4|PASD4|bHLHe9 HGNC:7895|MIM:603347|Ensembl:ENSG00000170485|HPRD:09137|Vega:OTTHUMG00000130675 2 2q11.2 neuronal PAS domain protein 2 protein-coding NPAS2 neuronal PAS domain protein 2 O PAS domain-containing protein 4|basic-helix-loop-helix-PAS protein MOP4|class E basic helix-loop-helix protein 9|member of PAS protein 4|member of PAS superfamily 4|neuronal PAS domain-containing protein 2|neuronal PAS2 20121230 -9606 4863 NPAT - E14|E14/NPAT|p220 HGNC:7896|MIM:601448|Ensembl:ENSG00000149308|HPRD:03266|Vega:OTTHUMG00000166385 11 11q22-q23 nuclear protein, ataxia-telangiectasia locus protein-coding NPAT nuclear protein, ataxia-telangiectasia locus O E14|nuclear protein of the ATM locus|nuclear protein of the ataxia telangiectasia mutated locus|protein NPAT 20121230 -9606 4864 NPC1 - NPC HGNC:7897|MIM:607623|Ensembl:ENSG00000141458|HPRD:09622|Vega:OTTHUMG00000131873 18 18q11.2 Niemann-Pick disease, type C1 protein-coding NPC1 Niemann-Pick disease, type C1 O Niemann-Pick C1 protein 20121230 -9606 4867 NPHP1 - JBTS4|NPH1|SLSN1 HGNC:7905|MIM:607100|Ensembl:ENSG00000144061|HPRD:02019|HPRD:09524|Vega:OTTHUMG00000131195 2 2q13 nephronophthisis 1 (juvenile) protein-coding NPHP1 nephronophthisis 1 (juvenile) O juvenile nephronophthisis 1 protein|nephrocystin 1|nephrocystin-1 20121230 -9606 4868 NPHS1 - CNF|NPHN|nephrin HGNC:7908|MIM:602716|Ensembl:ENSG00000161270|HPRD:04094|Vega:OTTHUMG00000180689 19 19q13.1 nephrosis 1, congenital, Finnish type (nephrin) protein-coding NPHS1 nephrosis 1, congenital, Finnish type (nephrin) O nephrin|renal glomerulus-specific cell adhesion receptor 20121230 -9606 4869 NPM1 - B23|NPM HGNC:7910|MIM:164040|Ensembl:ENSG00000181163|HPRD:01246|Vega:OTTHUMG00000130465 5 5q35.1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) protein-coding NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) O nucleolar protein NO38|nucleophosmin|nucleophosmin/nucleoplasmin family, member 1 20121230 -9606 4870 NPM1P1 - NG1-1.6|NPMP1 HGNC:7911 18 18q12.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 1 pseudo NPM1P1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 1 O - 20121230 -9606 4871 NPM1P2 - NG2-6|NPMP2 HGNC:7922 18 18q11.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2 pseudo NPM1P2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2 O - 20121230 -9606 4872 NPM1P3 - NG2-6|NG3-3|NPM1P15|NPMP3 HGNC:7923 16 16p13.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 3 pseudo NPM1P3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 3 O - 20121230 -9606 4874 NPM1P5 - NG5-4|NPMP5 HGNC:7925 15 15q26.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 5 pseudo NPM1P5 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 5 O - 20121230 -9606 4875 NPM1P6 - NG6-4|NPMP6 HGNC:7926 8 8q12.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 6 pseudo NPM1P6 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 6 O - 20121230 -9606 4877 NT3 - - HGNC:8020 - - 3'-nucleotidase protein-coding NT3 3'-nucleotidase O - 20121211 -9606 4878 NPPA - ANF|ANP|ATFB6|CDD-ANF|PND HGNC:7939|MIM:108780|Ensembl:ENSG00000175206|HPRD:00164|Vega:OTTHUMG00000002388 1 1p36.21 natriuretic peptide A protein-coding NPPA natriuretic peptide A O atriopeptin|cardionatrin|natriuretic peptide precursor A|natriuretic peptides A|prepronatriodilatin 20121230 -9606 4879 NPPB - BNP HGNC:7940|MIM:600295|Ensembl:ENSG00000120937|HPRD:08974|Vega:OTTHUMG00000002389 1 1p36.2 natriuretic peptide B protein-coding NPPB natriuretic peptide B O brain type natriuretic peptide|gamma-brain natriuretic peptide|natriuretic peptide precursor B|natriuretic peptides B|natriuretic protein 20121230 -9606 4880 NPPC - CNP|CNP2 HGNC:7941|MIM:600296|Ensembl:ENSG00000163273|HPRD:08975|Vega:OTTHUMG00000133232 2 2q24-qter natriuretic peptide C protein-coding NPPC natriuretic peptide C O C-type natriuretic peptide|natriuretic peptide precursor C 20121230 -9606 4881 NPR1 RP11-354A16.3 ANPRA|ANPa|GUC2A|GUCY2A|NPRA HGNC:7943|MIM:108960|Ensembl:ENSG00000169418|HPRD:00165|Vega:OTTHUMG00000037085 1 1q21-q22 natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) protein-coding NPR1 natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) O ANP-A|ANPR-A|GC-A|NPR-A|atrial natriuretic peptide receptor 1|atrial natriuretic peptide receptor type A|atrionatriuretic peptide receptor A|guanylate cyclase A|natriuretic peptide A type receptor|natriuretic peptide receptor A 20121230 -9606 4882 NPR2 - AMDM|ANPRB|ANPb|GUC2B|GUCY2B|NPRB|NPRBi HGNC:7944|MIM:108961|Ensembl:ENSG00000159899|HPRD:00166|Vega:OTTHUMG00000019871 9 9p21-p12 natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) protein-coding NPR2 natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) O ANP-B|ANPR-B|GC-B|NPR-B|atrial natriuretic peptide B-type receptor|atrial natriuretic peptide receptor 2|atrial natriuretic peptide receptor type B|guanylate cyclase B 20121230 -9606 4883 NPR3 hCG_1781939 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC HGNC:7945|MIM:108962|Ensembl:ENSG00000113389|HPRD:00167|Vega:OTTHUMG00000150316 5 5p14-p13 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) protein-coding NPR3 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) O atrial natriuretic peptide clearance receptor|atrial natriuretic peptide receptor 3|atrial natriuretic peptide receptor type C 20121230 -9606 4884 NPTX1 - NP1 HGNC:7952|MIM:602367|Ensembl:ENSG00000171246|HPRD:03843|Vega:OTTHUMG00000177607 17 17q25.3 neuronal pentraxin I protein-coding NPTX1 neuronal pentraxin I O NP-I|neuronal pentraxin-1 20121230 -9606 4885 NPTX2 - NARP|NP-II|NP2 HGNC:7953|MIM:600750|Ensembl:ENSG00000106236|HPRD:02853|Vega:OTTHUMG00000154369 7 7q21.3-q22.1 neuronal pentraxin II protein-coding NPTX2 neuronal pentraxin II O apexin|neuronal activity-regulated pentaxin|neuronal pentraxin-2 20121230 -9606 4886 NPY1R - NPY1-R|NPYR HGNC:7956|MIM:162641|Ensembl:ENSG00000164128|HPRD:01215|Vega:OTTHUMG00000161371 4 4q31.3-q32 neuropeptide Y receptor Y1 protein-coding NPY1R neuropeptide Y receptor Y1 O neuropeptide Y receptor type 1 20121230 -9606 4887 NPY2R - NPY2-R HGNC:7957|MIM:162642|Ensembl:ENSG00000185149|HPRD:01216|Vega:OTTHUMG00000161485 4 4q31 neuropeptide Y receptor Y2 protein-coding NPY2R neuropeptide Y receptor Y2 O NPY-Y2 receptor|Y2 receptor|neuropeptide Y receptor type 2 20121230 -9606 4888 NPY6R - NPY1RL|PP2|Y2B HGNC:7959|MIM:601770 5 5q31.2 neuropeptide Y receptor Y6 (pseudogene) pseudo NPY6R neuropeptide Y receptor Y6 (pseudogene) O - 20121230 -9606 4889 NPY5R - NPY5-R|NPYR5|NPYY5-R HGNC:7958|MIM:602001|Ensembl:ENSG00000164129|HPRD:03591|Vega:OTTHUMG00000161353 4 4q31-q32 neuropeptide Y receptor Y5 protein-coding NPY5R neuropeptide Y receptor Y5 O NPY-Y5 receptor|Y5 receptor|neuropeptide Y receptor type 5 20121230 -9606 4891 SLC11A2 OK/SW-cl.20 DCT1|DMT1|NRAMP2 HGNC:10908|MIM:600523|Ensembl:ENSG00000110911|HPRD:02750|Vega:OTTHUMG00000169493 12 12q13 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 protein-coding SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 O DMT-1|NRAMP 2|divalent cation transporter 1|natural resistance-associated macrophage protein 2 20121230 -9606 4892 NRAP RP11-190F19.1 N-RAP HGNC:7988|MIM:602873|Ensembl:ENSG00000197893|HPRD:04189|Vega:OTTHUMG00000019072 10 10q24-q26 nebulin-related anchoring protein protein-coding NRAP nebulin-related anchoring protein O nebulin-related-anchoring protein 20121230 -9606 4893 NRAS RP5-1000E10.2 ALPS4|N-ras|NRAS1|NS6 HGNC:7989|MIM:164790|Ensembl:ENSG00000213281|HPRD:01273|Vega:OTTHUMG00000012059 1 1p13.2 neuroblastoma RAS viral (v-ras) oncogene homolog protein-coding NRAS neuroblastoma RAS viral (v-ras) oncogene homolog O GTPase NRas|N-ras protein part 4|transforming protein N-Ras|v-ras neuroblastoma RAS viral oncogene homolog 20121230 -9606 4897 NRCAM - - HGNC:7994|MIM:601581|Ensembl:ENSG00000091129|HPRD:07207|Vega:OTTHUMG00000154973 7 7q31 neuronal cell adhesion molecule protein-coding NRCAM neuronal cell adhesion molecule O NgCAM-related cell adhesion molecule|neuronal surface protein Bravo 20121230 -9606 4898 NRD1 RP4-657D16.2 hNRD1|hNRD2 HGNC:7995|MIM:602651|Ensembl:ENSG00000078618|HPRD:04036|Vega:OTTHUMG00000008278 1 1p32.2-p32.1 nardilysin (N-arginine dibasic convertase) protein-coding NRD1 nardilysin (N-arginine dibasic convertase) O NRD convertase|NRD-C|nardilysin 20121230 -9606 4899 NRF1 - ALPHA-PAL HGNC:7996|MIM:600879|Ensembl:ENSG00000106459|HPRD:02930|Vega:OTTHUMG00000143736 7 7q32 nuclear respiratory factor 1 protein-coding NRF1 nuclear respiratory factor 1 O NRF-1|alpha palindromic-binding protein 20121230 -9606 4900 NRGN - RC3|hng HGNC:8000|MIM:602350|Ensembl:ENSG00000154146|HPRD:03828|Vega:OTTHUMG00000165928 11 11q24 neurogranin (protein kinase C substrate, RC3) protein-coding NRGN neurogranin (protein kinase C substrate, RC3) O calmodulin-binding protein|neurogranin|ng|protein kinase C substrate 20121230 -9606 4901 NRL - D14S46E|NRL-MAF|RP27 HGNC:8002|MIM:162080|Ensembl:ENSG00000129535|HPRD:08875|Vega:OTTHUMG00000028789 14 14q11.1-q11.2 neural retina leucine zipper protein-coding NRL neural retina leucine zipper O neural retina-specific leucine zipper protein|neural retinal-specific leucine zipper 20121230 -9606 4902 NRTN - NTN HGNC:8007|MIM:602018|Ensembl:ENSG00000171119|HPRD:03604|Vega:OTTHUMG00000180555 19 19p13.3 neurturin protein-coding NRTN neurturin O - 20121230 -9606 4904 YBX1 - BP-8|CSDA2|CSDB|DBPB|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 HGNC:8014|MIM:154030|Ensembl:ENSG00000065978|HPRD:01095|Vega:OTTHUMG00000007523 1 1p34 Y box binding protein 1 protein-coding YBX1 Y box binding protein 1 O CBF-A|CCAAT-binding transcription factor I subunit A|DNA-binding protein B|EFI-A|Y-box transcription factor|Y-box-binding protein 1|enhancer factor I subunit A|major histocompatibility complex, class II, Y box-binding protein I|nuclease sensitive element binding protein 1|nuclease-sensitive element-binding protein 1 20121230 -9606 4905 NSF - SKD2 HGNC:8016|MIM:601633|Ensembl:ENSG00000073969|HPRD:03380|Vega:OTTHUMG00000134315 17 17q21 N-ethylmaleimide-sensitive factor protein-coding NSF N-ethylmaleimide-sensitive factor O N-ethylmaleimide-sensitive factor-like protein|N-ethylmaleimide-sensitive fusion protein|NEM-sensitive fusion protein|vesicle-fusing ATPase|vesicular-fusion protein NSF 20121230 -9606 4906 NSX - - HGNC:8019|MIM:310465 X Xp22.3-p21.1 N syndrome (mental retardation, malformations, chromosome breakage) unknown NSX N syndrome (mental retardation, malformations, chromosome breakage) O - 20110215 -9606 4907 NT5E RP11-321N4.1 CD73|E5NT|NT|NT5|NTE|eN|eNT HGNC:8021|MIM:129190|Ensembl:ENSG00000135318|HPRD:00552|Vega:OTTHUMG00000015139 6 6q14-q21 5'-nucleotidase, ecto (CD73) protein-coding NT5E 5'-nucleotidase, ecto (CD73) O 5'-NT|5'-nucleotidase|Purine 5-Prime-Nucleotidase|ecto-5'-nucleotidase 20121230 -9606 4908 NTF3 - HDNF|NGF-2|NGF2|NT3 HGNC:8023|MIM:162660|Ensembl:ENSG00000185652|HPRD:01219|Vega:OTTHUMG00000168649 12 12p13 neurotrophin 3 protein-coding NTF3 neurotrophin 3 O NT-3|nerve growth factor 2|neurotrophic factor|neurotrophin-3 20121230 -9606 4909 NTF4 - GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5 HGNC:8024|MIM:162662|Ensembl:ENSG00000167744|HPRD:01220 19 19q13.3 neurotrophin 4 protein-coding NTF4 neurotrophin 4 O neurotrophic factor 4|neurotrophic factor 5|neurotrophin 5 (neurotrophin 4/5)|neurotrophin-4|neurotrophin-5|neutrophic factor 4 20121230 -9606 4910 NTF6A - NTF5P|NTF6|PSI-NT4 HGNC:8025 19 19q13.3 neurotrophin 6 alpha (pseudogene) pseudo NTF6A neurotrophin 6 alpha (pseudogene) O - 20121230 -9606 4911 NTF6B - - HGNC:8026 19 19q13.3 neurotrophin 6 beta (pseudogene) pseudo NTF6B neurotrophin 6 beta (pseudogene) O - 20121230 -9606 4912 NTF6G - - HGNC:8027 19 19q13.3 neurotrophin 6 gamma (pseudogene) pseudo NTF6G neurotrophin 6 gamma (pseudogene) O - 20121230 -9606 4913 NTHL1 - NTH1|OCTS3 HGNC:8028|MIM:602656|Ensembl:ENSG00000065057|HPRD:04039|Vega:OTTHUMG00000128744 16 16p13.3 nth endonuclease III-like 1 (E. coli) protein-coding NTHL1 nth endonuclease III-like 1 (E. coli) O endonuclease III-like protein 1 20121230 -9606 4914 NTRK1 - MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA HGNC:8031|MIM:191315|Ensembl:ENSG00000198400|HPRD:01869|Vega:OTTHUMG00000041304 1 1q21-q22 neurotrophic tyrosine kinase, receptor, type 1 protein-coding NTRK1 neurotrophic tyrosine kinase, receptor, type 1 O Oncogene TRK|TRK1-transforming tyrosine kinase protein|gp140trk|high affinity nerve growth factor receptor|tropomyosin-related kinase A|tyrosine kinase receptor A 20121230 -9606 4915 NTRK2 RP11-263K15.1 GP145-TrkB|TRKB|trk-B HGNC:8032|MIM:600456|Ensembl:ENSG00000148053|HPRD:02712|Vega:OTTHUMG00000020120 9 9q22.1 neurotrophic tyrosine kinase, receptor, type 2 protein-coding NTRK2 neurotrophic tyrosine kinase, receptor, type 2 O BDNF-tropomyosine receptor kinase B|BDNF/NT-3 growth factors receptor|trkB tyrosine kinase|tropomyosin-related kinase B|tyrosine kinase receptor B 20121230 -9606 4916 NTRK3 - TRKC|gp145(trkC) HGNC:8033|MIM:191316|Ensembl:ENSG00000140538|HPRD:01870|Vega:OTTHUMG00000148677 15 15q25 neurotrophic tyrosine kinase, receptor, type 3 protein-coding NTRK3 neurotrophic tyrosine kinase, receptor, type 3 O ETS related protein-neurotrophic receptor tyrosine kinase fusion protein|ETV6-NTRK3 fusion|GP145-TrkC|NT-3 growth factor receptor|tyrosine kinase receptor C 20121230 -9606 4917 NTN3 - NTN2L HGNC:8030|MIM:602349|Ensembl:ENSG00000162068|HPRD:03827|Vega:OTTHUMG00000128867 16 16p13.3 netrin 3 protein-coding NTN3 netrin 3 O Netrin-2, chicken, homolog of, like|netrin-2-like protein|netrin-3 20121230 -9606 4919 ROR1 RP11-24J23.1 NTRKR1|dJ537F10.1 HGNC:10256|MIM:602336|Ensembl:ENSG00000185483|HPRD:03821|Vega:OTTHUMG00000009022 1 1p32-p31 receptor tyrosine kinase-like orphan receptor 1 protein-coding ROR1 receptor tyrosine kinase-like orphan receptor 1 O neurotrophic tyrosine kinase, receptor-related 1|tyrosine-protein kinase transmembrane receptor ROR1 20121230 -9606 4920 ROR2 RP11-8I8.2 BDB|BDB1|NTRKR2 HGNC:10257|MIM:602337|Ensembl:ENSG00000169071|HPRD:03822|Vega:OTTHUMG00000020211 9 9q22 receptor tyrosine kinase-like orphan receptor 2 protein-coding ROR2 receptor tyrosine kinase-like orphan receptor 2 O neurotrophic tyrosine kinase receptor-related 2|tyrosine-protein kinase transmembrane receptor ROR2 20121230 -9606 4921 DDR2 RP11-572K18.1 MIG20a|NTRKR3|TKT|TYRO10 HGNC:2731|MIM:191311|Ensembl:ENSG00000162733|HPRD:01868|Vega:OTTHUMG00000034423 1 1q23.3 discoidin domain receptor tyrosine kinase 2 protein-coding DDR2 discoidin domain receptor tyrosine kinase 2 O CD167 antigen-like family member B|cell migration-inducing protein 20|discoidin domain receptor 2|discoidin domain receptor family, member 2|discoidin domain-containing receptor 2|discoidin domain-containing receptor tyrosine kinase 2|hydroxyaryl-protein kinase|migration-inducing gene 16 protein|neurotrophic tyrosine kinase receptor related 3|neurotrophic tyrosine kinase, receptor-related 3|receptor protein-tyrosine kinase TKT|tyrosine-protein kinase TYRO10|tyrosylprotein kinase 20121230 -9606 4922 NTS - NMN-125|NN|NT|NT/N|NTS1 HGNC:8038|MIM:162650|Ensembl:ENSG00000133636|HPRD:08878|Vega:OTTHUMG00000169832 12 12q21 neurotensin protein-coding NTS neurotensin O neurotensin/neuromedin N 20121230 -9606 4923 NTSR1 - NTR HGNC:8039|MIM:162651|Ensembl:ENSG00000101188|HPRD:01218|Vega:OTTHUMG00000032932 20 20q13 neurotensin receptor 1 (high affinity) protein-coding NTSR1 neurotensin receptor 1 (high affinity) O NT-R-1|NTR1|NTRH|high-affinity levocabastine-insensitive neurotensin receptor|neurotensin receptor type 1 20121230 -9606 4924 NUCB1 - CALNUC|NUC HGNC:8043|MIM:601323|Ensembl:ENSG00000104805|HPRD:03205|Vega:OTTHUMG00000152514 19 19q13.33 nucleobindin 1 protein-coding NUCB1 nucleobindin 1 O nucleobindin-1 20121230 -9606 4925 NUCB2 - NEFA HGNC:8044|MIM:608020|Ensembl:ENSG00000070081|HPRD:09726|Vega:OTTHUMG00000166050 11 11p15.1 nucleobindin 2 protein-coding NUCB2 nucleobindin 2 O DNA-binding protein NEFA|gastric cancer antigen Zg4|nesfatin-1|nucleobindin-2|nucleobinding 2|prepronefastin 20121230 -9606 4926 NUMA1 - NUMA HGNC:8059|MIM:164009|Ensembl:ENSG00000137497|HPRD:01236|Vega:OTTHUMG00000167697 11 11q13 nuclear mitotic apparatus protein 1 protein-coding NUMA1 nuclear mitotic apparatus protein 1 O SP-H antigen|centrophilin stabilizes mitotic spindle in mitotic cells|structural nuclear protein 20121230 -9606 4927 NUP88 - - HGNC:8067|MIM:602552|Ensembl:ENSG00000108559|HPRD:03974|Vega:OTTHUMG00000099453 17 17p13.2 nucleoporin 88kDa protein-coding NUP88 nucleoporin 88kDa O 88 kDa nucleoporin|karyoporin|nuclear pore complex protein 88|nuclear pore complex protein Nup88|nucleoporin Nup88 20121230 -9606 4928 NUP98 - ADIR2|NUP196|NUP96 HGNC:8068|MIM:601021|Ensembl:ENSG00000110713|HPRD:03012|Vega:OTTHUMG00000011846 11 11p15.5 nucleoporin 98kDa protein-coding NUP98 nucleoporin 98kDa O GLFG-repeat containing nucleoporin|Nup98-Nup96|nuclear pore complex protein Nup98-Nup96 20121230 -9606 4929 NR4A2 - HZF-3|NOT|NURR1|RNR1|TINUR HGNC:7981|MIM:601828|Ensembl:ENSG00000153234|HPRD:03493|Vega:OTTHUMG00000131950 2 2q22-q23 nuclear receptor subfamily 4, group A, member 2 protein-coding NR4A2 nuclear receptor subfamily 4, group A, member 2 O NGFI-B/nur77 beta-type transcription factor homolog|T-cell nuclear receptor NOT|immediate-early response protein NOT|intermediate-early receptor protein|nuclear receptor related 1|nuclear receptor subfamily 4 group A member 2|nur related protein-1, human homolog of|orphan nuclear receptor NR4A2|orphan nuclear receptor NURR1|transcriptionally inducible nuclear receptor related 1|transcriptionally-inducible nuclear receptor 20121230 -9606 4931 NVL - - HGNC:8070|MIM:602426|Ensembl:ENSG00000143748|HPRD:03887|Vega:OTTHUMG00000037536 1 1q41-q42.2 nuclear VCP-like protein-coding NVL nuclear VCP-like O NVLp|nuclear valosin-containing protein-like 20121230 -9606 4933 NYS2 - NYSA HGNC:8080|MIM:164100 6 6p12 nystagmus 2, congenital autosomal dominant unknown NYS2 nystagmus 2, congenital autosomal dominant O - 20120622 -9606 4934 NYS3 - CN HGNC:8081|MIM:608345 7 7p11 nystagmus 3, congenital autosomal dominant unknown NYS3 nystagmus 3, congenital autosomal dominant O - 20120622 -9606 4935 GPR143 - NYS6|OA1 HGNC:20145|MIM:300808|Ensembl:ENSG00000101850|HPRD:02355|Vega:OTTHUMG00000021118 X Xp22.3 G protein-coupled receptor 143 protein-coding GPR143 G protein-coupled receptor 143 O G-protein coupled receptor 143|ocular albinism type 1 protein 20121230 -9606 4936 OA3 - OAR HGNC:8084 6 6q13-q15 ocular albinism 3 (autosomal recessive) unknown OA3 ocular albinism 3 (autosomal recessive) O - 20110215 -9606 4937 OAP - OA|OASF HGNC:8085 11 11q osteoarthrosis, precocious unknown OAP osteoarthrosis, precocious O - 20110215 -9606 4938 OAS1 - IFI-4|OIAS|OIASI HGNC:8086|MIM:164350|Ensembl:ENSG00000089127|HPRD:08879|Vega:OTTHUMG00000169792 12 12q24.2 2'-5'-oligoadenylate synthetase 1, 40/46kDa protein-coding OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa O (2-5')oligo(A) synthase 1|(2-5')oligo(A) synthetase 1|2',5'-oligo A synthetase 1|2',5'-oligoadenylate synthetase 1, 40/46kDa|2'-5' oligoadenylate synthetase 1 p48 isoform|2'-5' oligoadenylate synthetase 1 p52 isoform|2'-5'-oligoadenylate synthase 1|2'-5'-oligoisoadenylate synthetase 1|2-5A synthase 1|2-5A synthetase 1|E18/E16|p46/p42 OAS 20121230 -9606 4939 OAS2 - - HGNC:8087|MIM:603350|Ensembl:ENSG00000111335|HPRD:04518|Vega:OTTHUMG00000169802 12 12q24.2 2'-5'-oligoadenylate synthetase 2, 69/71kDa protein-coding OAS2 2'-5'-oligoadenylate synthetase 2, 69/71kDa O (2'-5')oligo(A) synthetase 2|2'-5'-oligoadenylate synthase 2|2-5A synthase 2|p69 OAS / p71 OAS 20121230 -9606 4940 OAS3 P/OKcl.4 p100 HGNC:8088|MIM:603351|Ensembl:ENSG00000111331|HPRD:04519|Vega:OTTHUMG00000169795 12 12q24.2 2'-5'-oligoadenylate synthetase 3, 100kDa protein-coding OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa O (2-5')oligo(A) synthase 3|(2-5')oligo(A) synthetase 3|2'-5'-oligoadenylate synthase 3|2'-5'oligoadenylate synthetase p100|2-5A synthase 3|2-5A synthetase 3|p100 OAS|p100OAS 20121230 -9606 4941 OASD - - HGNC:8089|MIM:300650 X Xp22.3 ocular albinism and sensorineural deafness unknown OASD ocular albinism and sensorineural deafness O - 20120622 -9606 4942 OAT - GACR|HOGA|OATASE|OKT HGNC:8091|MIM:613349|Ensembl:ENSG00000065154|HPRD:02021|Vega:OTTHUMG00000019213 10 10q26 ornithine aminotransferase protein-coding OAT ornithine aminotransferase O gyrate atrophy|ornithine aminotransferase, mitochondrial|ornithine delta-aminotransferase|ornithine-oxo-acid aminotransferase 20121230 -9606 4943 TBC1D25 - MG81|OATL1 HGNC:8092|MIM:311240|Ensembl:ENSG00000068354|HPRD:08948|Vega:OTTHUMG00000024123 X Xp11.23 TBC1 domain family, member 25 protein-coding TBC1D25 TBC1 domain family, member 25 O 5SN3 snoRNA|TBC1 domain family member 25|ornithine aminotransferase-like 1 20121230 -9606 4945 OATP1 - OATL3 HGNC:8094 10 10q26 ornithine aminotransferase pseudogene 1 pseudo OATP1 ornithine aminotransferase pseudogene 1 O - 20121230 -9606 4946 OAZ1 - AZI|OAZ HGNC:8095|MIM:601579|Ensembl:ENSG00000104904|HPRD:03346|Vega:OTTHUMG00000178459 19 19p13.3 ornithine decarboxylase antizyme 1 protein-coding OAZ1 ornithine decarboxylase antizyme 1 O ODC-Az|antizyme 1 20121230 -9606 4947 OAZ2 - AZ2 HGNC:8096|MIM:604152|Ensembl:ENSG00000180304|HPRD:11966|Vega:OTTHUMG00000172473 15 15q22.31 ornithine decarboxylase antizyme 2 protein-coding OAZ2 ornithine decarboxylase antizyme 2 O ODC-Az 2 20121230 -9606 4948 OCA2 - BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 HGNC:8101|MIM:611409|Ensembl:ENSG00000104044|HPRD:01945|Vega:OTTHUMG00000128871 15 15q oculocutaneous albinism II protein-coding OCA2 oculocutaneous albinism II O P protein|eye color 2 (central brown)|eye color 3 (brown)|hair color 3 (brown)|melanocyte-specific transporter protein|oculocutaneous albinism II (pink-eye dilution homolog, mouse)|pink-eyed dilution protein homolog|total brown iris pigmentation 20121230 -9606 4951 OCM2 - OCM HGNC:34396|Ensembl:ENSG00000135175|HPRD:01274|Vega:OTTHUMG00000154162 7 7q21.2 oncomodulin 2 protein-coding OCM2 oncomodulin 2 O OM|parvalbumin beta|putative oncomodulin-2 20121230 -9606 4952 OCRL RP3-454M7.1 INPP5F|LOCR|NPHL2|OCRL-1|OCRL1 HGNC:8108|MIM:300535|Ensembl:ENSG00000122126|HPRD:02395|Vega:OTTHUMG00000022706 X Xq25 oculocerebrorenal syndrome of Lowe protein-coding OCRL oculocerebrorenal syndrome of Lowe O Lowe oculocerebrorenal syndrome protein|inositol polyphosphate 5-phosphatase OCRL-1|phosphatidylinositol polyphosphate 5-phosphatase 20121230 -9606 4953 ODC1 - ODC HGNC:8109|MIM:165640|Ensembl:ENSG00000115758|HPRD:01324|Vega:OTTHUMG00000090450 2 2p25 ornithine decarboxylase 1 protein-coding ODC1 ornithine decarboxylase 1 O ornithine decarboxylase 20121230 -9606 4954 ODCP - ODC2 HGNC:8110 7 7q31-qter ornithine decarboxylase pseudogene pseudo ODCP ornithine decarboxylase pseudogene O - 20121230 -9606 4956 ODF1 - CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF HGNC:8113|MIM:182878|Ensembl:ENSG00000155087|HPRD:01687|Vega:OTTHUMG00000164719 8 8q22.3 outer dense fiber of sperm tails 1 protein-coding ODF1 outer dense fiber of sperm tails 1 O cancer/testis antigen 133|outer dense fiber of sperm tails, 27-kD|outer dense fiber protein 1 20121230 -9606 4957 ODF2 RP11-187B3.1 CT134|ODF2/1|ODF2/2|ODF84 HGNC:8114|MIM:602015|Ensembl:ENSG00000136811|HPRD:03601|Vega:OTTHUMG00000020748 9 9q34.11 outer dense fiber of sperm tails 2 protein-coding ODF2 outer dense fiber of sperm tails 2 O cancer/testis antigen 134|cenexin 1|outer dense fiber of sperm tails, 84-kD|outer dense fiber protein 2|sperm tail structural protein 20121230 -9606 4958 OMD UNQ190/PRO216 OSAD|SLRR2C HGNC:8134|Ensembl:ENSG00000127083|HPRD:10128|Vega:OTTHUMG00000020225 9 9q22.31 osteomodulin protein-coding OMD osteomodulin O KSPG osteomodulin|keratan sulfate proteoglycan osteomodulin|osteoadherin proteoglycan 20121230 -9606 4961 OED - - HGNC:8118 X Xp21.3 Oregon eye disease unknown OED Oregon eye disease O - 20110215 -9606 4963 OFC1 - CL|OFC HGNC:8120|MIM:119530 6 6p24 orofacial cleft 1 unknown OFC1 orofacial cleft 1 O - 20121010 -9606 4964 OFC2 - - HGNC:8121|MIM:602966 2 2p14-p13 orofacial cleft 2 unknown OFC2 orofacial cleft 2 O - 20120622 -9606 4965 OFC3 - - HGNC:8122|MIM:600757 19 19q13 orofacial cleft 3 unknown OFC3 orofacial cleft 3 O - 20120622 -9606 4967 OGDH - AKGDH|E1k|OGDC HGNC:8124|MIM:613022|Ensembl:ENSG00000105953|HPRD:08938|Vega:OTTHUMG00000155304 7 7p14-p13 oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) protein-coding OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) O 2-oxoglutarate dehydrogenase complex component E1|2-oxoglutarate dehydrogenase, mitochondrial|OGDC-E1|oxoglutarate decarboxylase|oxoglutarate dehydrogenase (succinyl-transferring) 20121230 -9606 4968 OGG1 - HMMH|HOGG1|MUTM|OGH1 HGNC:8125|MIM:601982|Ensembl:ENSG00000114026|HPRD:03582|Vega:OTTHUMG00000097091 3 3p26.2 8-oxoguanine DNA glycosylase protein-coding OGG1 8-oxoguanine DNA glycosylase O 8-hydroxyguanine DNA glycosylase|AP lyase|DNA-apurinic or apyrimidinic site lyase|N-glycosylase/DNA lyase|OGG1 type 1f 20121230 -9606 4969 OGN - OG|OIF|SLRR3A HGNC:8126|MIM:602383|Ensembl:ENSG00000106809|HPRD:03856|Vega:OTTHUMG00000020224 9 9q22 osteoglycin protein-coding OGN osteoglycin O corneal keratan sulfate proteoglycan|mimecan|mimecan proteoglycan|osteoinductive factor 20121230 -9606 4973 OLR1 - CLEC8A|LOX1|LOXIN|SCARE1|SLOX1 HGNC:8133|MIM:602601|Ensembl:ENSG00000173391|HPRD:04003|Vega:OTTHUMG00000168527 12 12p13.2-p12.3 oxidized low density lipoprotein (lectin-like) receptor 1 protein-coding OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 O C-type lectin domain family 8 member A|hLOX-1|lectin-type oxidized LDL receptor 1|ox LDL receptor 1|oxidized low-density lipoprotein receptor 1|oxidized low-density lipoprotein receptor 1, soluble form|scavenger receptor class E, member 1 20121230 -9606 4974 OMG - OMGP HGNC:8135|MIM:164345|Ensembl:ENSG00000126861|HPRD:01257|Vega:OTTHUMG00000132870 17 17q11.2 oligodendrocyte myelin glycoprotein protein-coding OMG oligodendrocyte myelin glycoprotein O oligodendrocyte-myelin glycoprotein 20121230 -9606 4975 OMP - - HGNC:8136|MIM:164340|Ensembl:ENSG00000254550|HPRD:01254|Vega:OTTHUMG00000165193 11 11q13.5 olfactory marker protein protein-coding OMP olfactory marker protein O olfactory neuronal-specific protein 20121230 -9606 4976 OPA1 - MGM1|NPG|NTG|largeG HGNC:8140|MIM:605290|Ensembl:ENSG00000198836|HPRD:05596|Vega:OTTHUMG00000149897 3 3q28-q29 optic atrophy 1 (autosomal dominant) protein-coding OPA1 optic atrophy 1 (autosomal dominant) O dynamin-like 120 kDa protein, mitochondrial|dynamin-like guanosine triphosphatase|mitochondrial dynamin-like 120 kDa protein|mitochondrial dynamin-like GTPase|optic atrophy protein 1 20121230 -9606 4977 OPA2 - - HGNC:8141|MIM:311050 X Xp11.4-p11.2 optic atrophy 2 (obscure) unknown OPA2 optic atrophy 2 (obscure) O - 20120622 -9606 4978 OPCML - IGLON1|OBCAM|OPCM HGNC:8143|MIM:600632|Ensembl:ENSG00000183715|HPRD:07198|Vega:OTTHUMG00000163658 11 11q25 opioid binding protein/cell adhesion molecule-like protein-coding OPCML opioid binding protein/cell adhesion molecule-like O IgLON family member 1|opioid binding protein/cell adhesion molecule-like preprotein|opioid-binding protein/cell adhesion molecule 20121230 -9606 4981 OPEM - - HGNC:8146|MIM:311000 X - ophthalmoplegia, external, with myopia unknown OPEM ophthalmoplegia, external, with myopia O - 20110215 -9606 4982 TNFRSF11B - OCIF|OPG|TR1 HGNC:11909|MIM:602643|Ensembl:ENSG00000164761|HPRD:04032|Vega:OTTHUMG00000164969 8 8q24 tumor necrosis factor receptor superfamily, member 11b protein-coding TNFRSF11B tumor necrosis factor receptor superfamily, member 11b O osteoclastogenesis inhibitory factor|osteoprotegerin|tumor necrosis factor receptor superfamily member 11B 20121230 -9606 4983 OPHN1 RP6-201G10.1 ARHGAP41|MRX60|OPN1 HGNC:8148|MIM:300127|Ensembl:ENSG00000079482|HPRD:02130|Vega:OTTHUMG00000021744 X Xq12 oligophrenin 1 protein-coding OPHN1 oligophrenin 1 O mental retardation, X-linked 60|oligophrenin-1|oligophrenin-1, Rho-GTPase activating protein 20121230 -9606 4985 OPRD1 - OPRD HGNC:8153|MIM:165195|Ensembl:ENSG00000116329|HPRD:01308|Vega:OTTHUMG00000003646 1 1p36.1-p34.3 opioid receptor, delta 1 protein-coding OPRD1 opioid receptor, delta 1 O D-OR-1|DOR-1|delta opioid receptor 1|delta-type opioid receptor 20121230 -9606 4986 OPRK1 - KOR|OPRK HGNC:8154|MIM:165196|Ensembl:ENSG00000082556|HPRD:01309|Vega:OTTHUMG00000164276 8 8q11.2 opioid receptor, kappa 1 protein-coding OPRK1 opioid receptor, kappa 1 O K-OR-1|KOR-1|Opiate receptor, kappa-1|kappa opioid receptor|kappa-type opioid receptor 20121230 -9606 4987 OPRL1 - KOR-3|NOCIR|OOR|ORL1 HGNC:8155|MIM:602548|Ensembl:ENSG00000125510|HPRD:03971|Vega:OTTHUMG00000033027 20 20q13.33 opiate receptor-like 1 protein-coding OPRL1 opiate receptor-like 1 O kappa-type 3 opioid receptor|kappa3-related opioid receptor|nociceptin receptor|orphanin FQ receptor 20121230 -9606 4988 OPRM1 - LMOR|M-OR-1|MOP|MOR|MOR1|OPRM HGNC:8156|MIM:600018|Ensembl:ENSG00000112038|HPRD:02484|Vega:OTTHUMG00000015870 6 6q24-q25 opioid receptor, mu 1 protein-coding OPRM1 opioid receptor, mu 1 O mu opiate receptor|mu opioid receptor hMOR-1a|mu-type opioid receptor 20121230 -9606 4990 SIX6 - MCOPCT2|OPTX2|Six9 HGNC:10892|MIM:606326|Ensembl:ENSG00000184302|HPRD:07557|Vega:OTTHUMG00000152339 14 14q23.1 SIX homeobox 6 protein-coding SIX6 SIX homeobox 6 O homeobox protein SIX6|homeodomain protein OPTX2|optic homeobox 2|sine oculis homeobox homolog 6 20121230 -9606 4991 OR1D2 - OLFR1|OR17-4 HGNC:8183|MIM:164342|Ensembl:ENSG00000184166|HPRD:01255|Vega:OTTHUMG00000090619 17 17p13.3 olfactory receptor, family 1, subfamily D, member 2 protein-coding OR1D2 olfactory receptor, family 1, subfamily D, member 2 O olfactory receptor 17-4|olfactory receptor 1D2|olfactory receptor OR17-6|olfactory receptor-like protein HGMP07E 20121230 -9606 4992 OR1F1 - OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023 HGNC:8194|MIM:603232|Ensembl:ENSG00000168124|HPRD:09125|Vega:OTTHUMG00000133153 16 16p13.3 olfactory receptor, family 1, subfamily F, member 1 protein-coding OR1F1 olfactory receptor, family 1, subfamily F, member 1 O olfactory receptor 1F1|olfactory receptor, family 1, subfamily F, member 10|olfactory receptor, family 1, subfamily F, member 13 pseudogene|olfactory receptor, family 1, subfamily F, member 4|olfactory receptor, family 1, subfamily F, member 5|olfactory receptor, family 1, subfamily F, member 6|olfactory receptor, family 1, subfamily F, member 7|olfactory receptor, family 1, subfamily F, member 9 20121230 -9606 4993 OR2C1 - OLFmf3|OR2C2P HGNC:8242|Ensembl:ENSG00000168158|HPRD:10130|Vega:OTTHUMG00000090505 16 16p13.3 olfactory receptor, family 2, subfamily C, member 1 protein-coding OR2C1 olfactory receptor, family 2, subfamily C, member 1 O olfactory receptor 2C1|olfactory receptor 2C2|olfactory receptor OR16-1|olfactory receptor OR16-2|olfactory receptor, family 2, subfamily C, member 2 pseudogene 20121230 -9606 4994 OR3A1 - OLFRA03|OR17-40|OR17-82|OR40 HGNC:8282|Ensembl:ENSG00000180090|HPRD:10131|Vega:OTTHUMG00000090642 17 17p13.3 olfactory receptor, family 3, subfamily A, member 1 protein-coding OR3A1 olfactory receptor, family 3, subfamily A, member 1 O olfactory receptor 17-40|olfactory receptor 3A1|olfactory receptor OR17-15 20121230 -9606 4995 OR3A2 - OLFRA04|OR17-14|OR17-228|OR228 HGNC:8283|Ensembl:ENSG00000221882|HPRD:10132|Vega:OTTHUMG00000177667 17 17p13.3 olfactory receptor, family 3, subfamily A, member 2 protein-coding OR3A2 olfactory receptor, family 3, subfamily A, member 2 O olfactory receptor 17-228|olfactory receptor 3A2|olfactory receptor OR17-14 20121230 -9606 4998 ORC1 - HSORC1|ORC1L|PARC1 HGNC:8487|MIM:601902|Ensembl:ENSG00000085840|HPRD:03544|Vega:OTTHUMG00000008104 1 1p32 origin recognition complex, subunit 1 protein-coding ORC1 origin recognition complex, subunit 1 O origin recognition complex subunit 1|origin recognition complex, subunit 1 homolog|replication control protein 1 20121230 -9606 4999 ORC2 - ORC2L HGNC:8488|MIM:601182|Ensembl:ENSG00000115942|HPRD:03112|Vega:OTTHUMG00000132783 2 2q33 origin recognition complex, subunit 2 protein-coding ORC2 origin recognition complex, subunit 2 O origin recognition complex protein 2 homolog|origin recognition complex subunit 2|origin recognition complex, subunit 2 homolog 20121230 -9606 5000 ORC4 - ORC4L|ORC4P HGNC:8490|MIM:603056|Ensembl:ENSG00000115947|HPRD:09118|Vega:OTTHUMG00000131849 2 2q22-q23 origin recognition complex, subunit 4 protein-coding ORC4 origin recognition complex, subunit 4 O origin recognition complex subunit 4|origin recognition complex, subunit 4 homolog 20121230 -9606 5001 ORC5 - ORC5L|ORC5P|ORC5T HGNC:8491|MIM:602331|Ensembl:ENSG00000164815|HPRD:09086|Vega:OTTHUMG00000157275 7 7q22.1 origin recognition complex, subunit 5 protein-coding ORC5 origin recognition complex, subunit 5 O origin recognition complex subunit 5 20121230 -9606 5002 SLC22A18 - BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A HGNC:10964|MIM:602631|Ensembl:ENSG00000110628|HPRD:04024|Vega:OTTHUMG00000010037 11 11p15.5 solute carrier family 22, member 18 protein-coding SLC22A18 solute carrier family 22, member 18 O Beckwith-Wiedemann syndrome chromosome region 1, candidate A|ORCTL-2|beckwith-Wiedemann syndrome chromosomal region 1 candidate gene A protein|efflux transporter-like protein|imprinted multi-membrane spanning polyspecific transporter-related protein 1|imprinted multi-membrane-spanning polyspecific transporter-related protein 1|organic cation transporter-like 2|organic cation transporter-like protein 2|p45 Beckwith-Wiedemann region 1A|p45-Beckwith-Wiedemann region 1 A|solute carrier family 22 member 18|tumor-suppressing STF cDNA 5 protein|tumor-suppressing subchromosomal transferable fragment candidate gene 5 protein 20121230 -9606 5003 SLC22A18AS - BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B HGNC:10965|MIM:603240|Ensembl:ENSG00000254827|HPRD:09127|Vega:OTTHUMG00000010038 11 11p15.5 solute carrier family 22 (organic cation transporter), member 18 antisense protein-coding SLC22A18AS solute carrier family 22 (organic cation transporter), member 18 antisense O Beckwith-Wiedemann region 1B|Beckwith-Wiedemann syndrome chromosome region 1, candidate b|beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein|organic cation transporter-like 2 antisense|organic cation transporter-like protein 2 antisense protein|p27-Beckwith-Wiedemann region 1 B|solute carrier family 22 (organic cation transporter), member 1-like antisense|solute carrier family 22 member 1-like antisense protein|solute carrier family 22 member 18 antisense protein 20121230 -9606 5004 ORM1 RP11-82I1.3 AGP-A|AGP1|ORM HGNC:8498|MIM:138600|Ensembl:ENSG00000229314|HPRD:00724|Vega:OTTHUMG00000021012 9 9q31-q32 orosomucoid 1 protein-coding ORM1 orosomucoid 1 O AGP 1|OMD 1|alpha-1-acid glycoprotein 1|orosomucoid-1 20121230 -9606 5005 ORM2 RP11-82I1.2 AGP-B|AGP-B'|AGP2 HGNC:8499|MIM:138610|Ensembl:ENSG00000228278|HPRD:00725|Vega:OTTHUMG00000021014 9 9q32 orosomucoid 2 protein-coding ORM2 orosomucoid 2 O AGP 2|OMD 2|alpha-1-acid glycoprotein 2|alpha-1-acid glycoprotein, type 2|orosomucoid-2 20121230 -9606 5007 OSBP - OSBP1 HGNC:8503|MIM:167040|Ensembl:ENSG00000110048|HPRD:01327|Vega:OTTHUMG00000167422 11 11q12-q13 oxysterol binding protein protein-coding OSBP oxysterol binding protein O oxysterol-binding protein 1 20121230 -9606 5008 OSM - - HGNC:8506|MIM:165095|Ensembl:ENSG00000099985|HPRD:01300|Vega:OTTHUMG00000150913 22 22q12.2 oncostatin M protein-coding OSM oncostatin M O oncostatin-M 20121230 -9606 5009 OTC - OCTD HGNC:8512|MIM:300461|Ensembl:ENSG00000036473|HPRD:02408|HPRD:08947|Vega:OTTHUMG00000022727 X Xp21.1 ornithine carbamoyltransferase protein-coding OTC ornithine carbamoyltransferase O OTCase|ornithine carbamoyltransferase, mitochondrial|ornithine transcarbamylase 20121230 -9606 5010 CLDN11 - OSP|OTM HGNC:8514|MIM:601326|Ensembl:ENSG00000013297|HPRD:03207|Vega:OTTHUMG00000158940 3 3q26.2-q26.3 claudin 11 protein-coding CLDN11 claudin 11 O claudin-11|oligodendrocyte transmembrane protein|oligodendrocyte-specific protein 20121230 -9606 5012 OTSC1 - OTS HGNC:8519|MIM:166800 15 15q25-q26 otosclerosis 1 unknown OTSC1 otosclerosis 1 O - 20120622 -9606 5013 OTX1 - - HGNC:8521|MIM:600036|Ensembl:ENSG00000115507|HPRD:08964|Vega:OTTHUMG00000129454 2 2p13 orthodenticle homeobox 1 protein-coding OTX1 orthodenticle homeobox 1 O homeobox protein OTX1|orthodenticle homolog 1 20121230 -9606 5015 OTX2 - CPHD6|MCOPS5 HGNC:8522|MIM:600037|Ensembl:ENSG00000165588|HPRD:07190|Vega:OTTHUMG00000152338 14 14q22.3 orthodenticle homeobox 2 protein-coding OTX2 orthodenticle homeobox 2 O homeobox protein OTX2|orthodenticle homolog 2 20121230 -9606 5016 OVGP1 - CHIT5|EGP|MUC9|OGP HGNC:8524|MIM:603578|Ensembl:ENSG00000085465|HPRD:04658|Vega:OTTHUMG00000011746 1 1p13 oviductal glycoprotein 1, 120kDa protein-coding OVGP1 oviductal glycoprotein 1, 120kDa O estrogen-dependent oviduct protein|mucin 9|mucin-9|oviduct glycoprotein|oviduct-specific glycoprotein|oviductin 20121230 -9606 5017 OVOL1 - HOVO1 HGNC:8525|MIM:602313|Ensembl:ENSG00000172818|HPRD:09080|Vega:OTTHUMG00000166600 11 11q13 ovo-like 1(Drosophila) protein-coding OVOL1 ovo-like 1(Drosophila) O ovo homolog-like 1|putative transcription factor Ovo-like 1 20121230 -9606 5018 OXA1L - OXA1 HGNC:8526|MIM:601066|Ensembl:ENSG00000155463|HPRD:03043|Vega:OTTHUMG00000028691 14 14q11.2 oxidase (cytochrome c) assembly 1-like protein-coding OXA1L oxidase (cytochrome c) assembly 1-like O OXA1-like protein|OXA1Hs|hsa|mitochondrial inner membrane protein OXA1L|oxidase assembly 1-like protein 20121230 -9606 5019 OXCT1 - OXCT|SCOT HGNC:8527|MIM:601424|Ensembl:ENSG00000083720|HPRD:02001|Vega:OTTHUMG00000094783 5 5p13.1 3-oxoacid CoA transferase 1 protein-coding OXCT1 3-oxoacid CoA transferase 1 O 3-oxoacid CoA-transferase 1|3-oxoacid-CoA transferase 1|SCOT-s|somatic-type succinyl CoA:3-oxoacid CoA-transferase|somatic-type succinyl-CoA:3-oxoacid CoA-transferase|somatic-type succinyl-CoA:3-oxoacid-CoA-transferase|succinyl CoA:3-oxoacid CoA transferase|succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial|succinyl-CoA:3-ketoacid-CoA transferase|succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial 20121230 -9606 5020 OXT - OT|OT-NPI|OXT-NPI HGNC:8528|MIM:167050|Ensembl:ENSG00000101405|HPRD:08880|Vega:OTTHUMG00000031724 20 20p13 oxytocin/neurophysin I prepropeptide protein-coding OXT oxytocin/neurophysin I prepropeptide O neurophysin I|oxytocin, prepro- (neurophysin I)|oxytocin, prepropeptide|oxytocin-neurophysin 1|oxytocin-neurophysin I, preproprotein 20121230 -9606 5021 OXTR - OT-R HGNC:8529|MIM:167055|Ensembl:ENSG00000180914|HPRD:01328|Vega:OTTHUMG00000090537 3 3p25 oxytocin receptor protein-coding OXTR oxytocin receptor O - 20121230 -9606 5023 P2RX1 - P2X1 HGNC:8533|MIM:600845|Ensembl:ENSG00000108405|HPRD:07526|Vega:OTTHUMG00000177673 17 17p13.3 purinergic receptor P2X, ligand-gated ion channel, 1 protein-coding P2RX1 purinergic receptor P2X, ligand-gated ion channel, 1 O ATP receptor|P2X purinoceptor 1|P2X receptor, subunit 1|P2X1 receptor|purinergic receptor P2X1 20121230 -9606 5024 P2RX3 - P2X3 HGNC:8534|MIM:600843|Ensembl:ENSG00000109991|HPRD:09016|Vega:OTTHUMG00000167025 11 11q12 purinergic receptor P2X, ligand-gated ion channel, 3 protein-coding P2RX3 purinergic receptor P2X, ligand-gated ion channel, 3 O ATP receptor|P2X purinoceptor 3|P2X receptor, subunit 3|purinergic receptor P2X3|purinoceptor P2X3 20121230 -9606 5025 P2RX4 - P2X4|P2X4R HGNC:8535|MIM:600846|Ensembl:ENSG00000135124|HPRD:09017|Vega:OTTHUMG00000169155 12 12q24.32 purinergic receptor P2X, ligand-gated ion channel, 4 protein-coding P2RX4 purinergic receptor P2X, ligand-gated ion channel, 4 O ATP receptor|ATP-gated cation channel protein|P2X purinoceptor 4|P2X receptor, subunit 4|purinergic receptor P2X4|purinoceptor P2X4 20121230 -9606 5026 P2RX5 - LRH-1|P2X5|P2X5R HGNC:8536|MIM:602836|Ensembl:ENSG00000083454|Ensembl:ENSG00000257950|HPRD:09110|Vega:OTTHUMG00000090700|Vega:OTTHUMG00000169623 17 17p13.3 purinergic receptor P2X, ligand-gated ion channel, 5 protein-coding P2RX5 purinergic receptor P2X, ligand-gated ion channel, 5 O ATP receptor subunit|P2X purinoceptor 5|ionotropic ATP receptor P2X5|lymphoid-restricted histocompatibility antigen-1 20121230 -9606 5027 P2RX7 - P2X7 HGNC:8537|MIM:602566|Ensembl:ENSG00000089041|HPRD:03977|Vega:OTTHUMG00000169153 12 12q24 purinergic receptor P2X, ligand-gated ion channel, 7 protein-coding P2RX7 purinergic receptor P2X, ligand-gated ion channel, 7 O ATP receptor|P2X purinoceptor 7|P2X7 receptor|P2Z receptor|purinergic receptor P2X7 variant A 20121230 -9606 5028 P2RY1 - P2Y1 HGNC:8539|MIM:601167|Ensembl:ENSG00000169860|HPRD:03103|Vega:OTTHUMG00000159694 3 3q25.2 purinergic receptor P2Y, G-protein coupled, 1 protein-coding P2RY1 purinergic receptor P2Y, G-protein coupled, 1 O ATP receptor|P2 purinoceptor subtype Y1|P2Y purinoceptor 1|platelet ADP receptor 20121230 -9606 5029 P2RY2 - HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R HGNC:8541|MIM:600041|Ensembl:ENSG00000175591|HPRD:02499|Vega:OTTHUMG00000167966 11 11q13.5-q14.1 purinergic receptor P2Y, G-protein coupled, 2 protein-coding P2RY2 purinergic receptor P2Y, G-protein coupled, 2 O ATP receptor|P2U nucleotide receptor|P2U purinoceptor 1|P2Y purinoceptor 2|purinergic receptor P2Y2|purinoceptor P2Y2 20121230 -9606 5030 P2RY4 RP13-26D14.5 NRU|P2P|P2Y4|UNR HGNC:8542|MIM:300038|Ensembl:ENSG00000186912|HPRD:02075|Vega:OTTHUMG00000021769 X Xq13 pyrimidinergic receptor P2Y, G-protein coupled, 4 protein-coding P2RY4 pyrimidinergic receptor P2Y, G-protein coupled, 4 O P2Y purinoceptor 4|uridine nucleotide receptor 20121230 -9606 5031 P2RY6 PP2891 P2Y6 HGNC:8543|MIM:602451|Ensembl:ENSG00000171631|HPRD:03906|Vega:OTTHUMG00000167969 11 11q13.5 pyrimidinergic receptor P2Y, G-protein coupled, 6 protein-coding P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6 O G-coupled nucleotide receptor|P2 purinoceptor|P2Y purinoceptor 6|P2Y6 receptor 20121230 -9606 5032 P2RY11 - P2Y11 HGNC:8540|MIM:602697|Ensembl:ENSG00000244165|HPRD:04076|Vega:OTTHUMG00000150166 19 19p13.2 purinergic receptor P2Y, G-protein coupled, 11 protein-coding P2RY11 purinergic receptor P2Y, G-protein coupled, 11 O P2Y purinoceptor 11|purinergic receptor P2Y11 20121230 -9606 5033 P4HA1 RP11-344N10.1 P4HA HGNC:8546|MIM:176710|Ensembl:ENSG00000122884|HPRD:08901|Vega:OTTHUMG00000018449 10 10q21.3-q23.1 prolyl 4-hydroxylase, alpha polypeptide I protein-coding P4HA1 prolyl 4-hydroxylase, alpha polypeptide I O C-P4Halpha(I)|collagen prolyl 4-hydroxylase alpha(I)|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I|procollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-1|prolyl 4-hydroxylase subunit alpha-1 20121230 -9606 5034 P4HB - DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB HGNC:8548|MIM:176790|Ensembl:ENSG00000185624|HPRD:07181|Vega:OTTHUMG00000150269 17 17q25 prolyl 4-hydroxylase, beta polypeptide protein-coding P4HB prolyl 4-hydroxylase, beta polypeptide O cellular thyroid hormone-binding protein|collagen prolyl 4-hydroxylase beta|glutathione-insulin transhydrogenase|p55|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide|prolyl 4-hydroxylase subunit beta|protein disulfide isomerase family A, member 1|protein disulfide isomerase-associated 1|protein disulfide isomerase/oxidoreductase|protein disulfide-isomerase|protocollagen hydroxylase|thyroid hormone-binding protein p55 20121230 -9606 5036 PA2G4 - EBP1|HG4-1|p38-2G4 HGNC:8550|MIM:602145|Ensembl:ENSG00000170515|HPRD:03685|Vega:OTTHUMG00000170173 12 12q13.2 proliferation-associated 2G4, 38kDa protein-coding PA2G4 proliferation-associated 2G4, 38kDa O ErbB-3 binding protein 1|ErbB3-binding protein Ebp1|cell cycle protein p38-2G4 homolog|erbB3-binding protein 1|proliferation-associated protein 2G4 20121230 -9606 5037 PEBP1 - HCNP|HCNPpp|PBP|PEBP|PEBP-1|RKIP HGNC:8630|MIM:604591|Ensembl:ENSG00000089220|HPRD:06850|Vega:OTTHUMG00000168860 12 12q24.23 phosphatidylethanolamine binding protein 1 protein-coding PEBP1 phosphatidylethanolamine binding protein 1 O Raf kinase inhibitory protein|hippocampal cholinergic neurostimulating peptide|neuropolypeptide h3|phosphatidylethanolamine-binding protein 1|prostatic binding protein|prostatic-binding protein|raf kinase inhibitor protein 20121230 -9606 5042 PABPC3 RP11-165I9.5 PABP3|PABPL3|tPABP HGNC:8556|MIM:604680|Ensembl:ENSG00000151846|HPRD:05248|Vega:OTTHUMG00000016601 13 13q12-q13 poly(A) binding protein, cytoplasmic 3 protein-coding PABPC3 poly(A) binding protein, cytoplasmic 3 O PABP-3|poly(A)-binding protein 3|poly(A)-binding protein-like 3|polyadenylate-binding protein 3|testis PABP|testis-specific poly(A)-binding protein (PABP)|testis-specific poly(A)-binding protein 3 20121230 -9606 5043 PABX - - HGNC:8566 X Xp22.32 pseudoautosomal boundary region, X-linked unknown PABX pseudoautosomal boundary region, X-linked O - 20110215 -9606 5044 PABY - - HGNC:8567 Y Yp11.3 pseudoautosomal boundary region, Y-linked unknown PABY pseudoautosomal boundary region, Y-linked O - 20110215 -9606 5045 FURIN - FUR|PACE|PCSK3|SPC1 HGNC:8568|MIM:136950|Ensembl:ENSG00000140564|HPRD:00653|Vega:OTTHUMG00000149831 15 15q26.1 furin (paired basic amino acid cleaving enzyme) protein-coding FURIN furin (paired basic amino acid cleaving enzyme) O FES upstream region|dibasic processing enzyme|dibasic-processing enzyme|furin|furin, membrane associated receptor protein|paired basic amino acid residue-cleaving enzyme|proprotein convertase subtilisin/kexin type 3 20121230 -9606 5046 PCSK6 - PACE4|SPC4 HGNC:8569|MIM:167405|Ensembl:ENSG00000140479|HPRD:01329|Vega:OTTHUMG00000172097 15 15q26.3 proprotein convertase subtilisin/kexin type 6 protein-coding PCSK6 proprotein convertase subtilisin/kexin type 6 O paired basic amino acid cleaving enzyme 4|paired basic amino acid cleaving system 4|subtilisin-like proprotein convertase 4|subtilisin/kexin-like protease PACE4 20121230 -9606 5047 PAEP RP11-98L5.3 GD|GdA|GdF|GdS|PAEG|PEP|PP14 HGNC:8573|MIM:173310|Ensembl:ENSG00000122133|HPRD:01411|Vega:OTTHUMG00000020914 9 9q34 progestagen-associated endometrial protein protein-coding PAEP progestagen-associated endometrial protein O PEG|PP14 protein (placental protein 14)|alpha uterine protein|glycodelin|glycodelin-A|glycodelin-F|glycodelin-S|placental protein 14|pregnancy-associated endometrial alpha-2 globulin|pregnancy-associated endometrial alpha-2-globulin|progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial a|progesterone-associated endometrial protein 20121230 -9606 5048 PAFAH1B1 - LIS1|LIS2|MDCR|MDS|PAFAH HGNC:8574|MIM:601545|Ensembl:ENSG00000007168|HPRD:03329|Vega:OTTHUMG00000177574 17 17p13.3 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) protein-coding PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) O LIS-1|PAF acetylhydrolase 45 kDa subunit|PAF-AH 45 kDa subunit|PAF-AH alpha|PAFAH alpha|lissencephaly 1 protein|lissencephaly-1 protein|platelet-activating factor acetylhydrolase IB subunit alpha|platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD)|platelet-activating factor acetylhydrolase, isoform Ib, subunit 1 (45kDa) 20121230 -9606 5049 PAFAH1B2 - - HGNC:8575|MIM:602508|Ensembl:ENSG00000168092|HPRD:03940|Vega:OTTHUMG00000167064 11 11q23 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) protein-coding PAFAH1B2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) O PAF acetylhydrolase 30 kDa subunit|PAF-AH 30 kDa subunit|PAF-AH subunit beta|PAF-AH1b alpha 2 subunit|PAFAH subunit beta|intracellular platelet-activating factor acetylhydrolase alpha 2 subunit|platelet-activating factor acetylhydrolase IB subunit beta|platelet-activating factor acetylhydrolase, isoform Ib, subunit 2 (30kDa) 20121230 -9606 5050 PAFAH1B3 - PAFAHG HGNC:8576|MIM:603074|Ensembl:ENSG00000079462|HPRD:04354 19 19q13.1 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) protein-coding PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) O PAF acetylhydrolase 29 kDa subunit|PAF-AH 29 kDa subunit|PAF-AH subunit gamma|PAF-AH1b alpha 1 subunit|PAFAH subunit gamma|platelet-activating factor acetylhydrolase IB subunit gamma|platelet-activating factor acetylhydrolase, isoform Ib, subunit 3 (29kDa) 20121230 -9606 5051 PAFAH2 RP11-111D20.1 HSD-PLA2 HGNC:8579|MIM:602344|Ensembl:ENSG00000158006|HPRD:03824|Vega:OTTHUMG00000007437 1 1p36 platelet-activating factor acetylhydrolase 2, 40kDa protein-coding PAFAH2 platelet-activating factor acetylhydrolase 2, 40kDa O SD-PLA2|platelet-activating factor acetylhydrolase 2, cytoplasmic|serine-dependent phospholipase A2 20121230 -9606 5052 PRDX1 RP11-291L19.4 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 HGNC:9352|MIM:176763|Ensembl:ENSG00000117450|HPRD:01458|Vega:OTTHUMG00000007738 1 1p34.1 peroxiredoxin 1 protein-coding PRDX1 peroxiredoxin 1 O natural killer cell-enhancing factor A|natural killer-enhancing factor A|peroxiredoxin-1|proliferation-associated gene A|proliferation-associated gene protein|thioredoxin peroxidase 2|thioredoxin-dependent peroxide reductase 2 20121230 -9606 5053 PAH - PH|PKU|PKU1 HGNC:8582|MIM:612349|Ensembl:ENSG00000171759|HPRD:08943|Vega:OTTHUMG00000169966 12 12q22-q24.2 phenylalanine hydroxylase protein-coding PAH phenylalanine hydroxylase O phe-4-monooxygenase|phenylalanine 4-monooxygenase|phenylalanine-4-hydroxylase 20121230 -9606 5054 SERPINE1 - PAI|PAI-1|PAI1|PLANH1 HGNC:8583|MIM:173360|Ensembl:ENSG00000106366|HPRD:01418|Vega:OTTHUMG00000157107 7 7q22.1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 protein-coding SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 O endothelial plasminogen activator inhibitor|plasminogen activator inhibitor 1|serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1|serpin E1 20121230 -9606 5055 SERPINB2 - HsT1201|PAI|PAI-2|PAI2|PLANH2 HGNC:8584|MIM:173390|Ensembl:ENSG00000197632|HPRD:01420|Vega:OTTHUMG00000060592 18 18q21.3 serpin peptidase inhibitor, clade B (ovalbumin), member 2 protein-coding SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 O monocyte Arg-serpin|placental plasminogen activator inhibitor|plasminogen activator inhibitor 2|plasminogen activator inhibitor, type II (arginine-serpin)|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2|serpin B2|urokinase inhibitor 20121230 -9606 5058 PAK1 - PAKalpha HGNC:8590|MIM:602590|Ensembl:ENSG00000149269|HPRD:03995|Vega:OTTHUMG00000165138 11 11q13-q14 p21 protein (Cdc42/Rac)-activated kinase 1 protein-coding PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 O STE20 homolog, yeast|alpha-PAK|p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)|p21/Cdc42/Rac1-activated kinase 1 (yeast Ste20-related)|p65-PAK|serine/threonine-protein kinase PAK 1 20121230 -9606 5062 PAK2 - PAK65|PAKgamma HGNC:8591|MIM:605022|Ensembl:ENSG00000180370|HPRD:05428|Vega:OTTHUMG00000155534 3 3q29 p21 protein (Cdc42/Rac)-activated kinase 2 protein-coding PAK2 p21 protein (Cdc42/Rac)-activated kinase 2 O PAK-2|S6/H4 kinase|gamma-PAK|p21 (CDKN1A)-activated kinase 2|p21-activated kinase 2|p58|serine/threonine-protein kinase PAK 2 20121230 -9606 5063 PAK3 RP5-914P14.3 CDKN1A|MRX30|MRX47|OPHN3|PAK3beta|bPAK|hPAK3 HGNC:8592|MIM:300142|Ensembl:ENSG00000077264|HPRD:02142|Vega:OTTHUMG00000022202 X Xq23 p21 protein (Cdc42/Rac)-activated kinase 3 protein-coding PAK3 p21 protein (Cdc42/Rac)-activated kinase 3 O PAK-3|beta-PAK|oligophrenin-3|p21 (CDKN1A)-activated kinase 3|p21-activated kinase 3|serine/threonine-protein kinase PAK 3 20121230 -9606 5064 PALM - - HGNC:8594|MIM:608134|Ensembl:ENSG00000099864|HPRD:09734|Vega:OTTHUMG00000181785 19 19p13.3 paralemmin protein-coding PALM paralemmin O paralemmin-1 20121230 -9606 5066 PAM - PAL|PHM HGNC:8596|MIM:170270|Ensembl:ENSG00000145730|HPRD:01361|Vega:OTTHUMG00000128729 5 5q14-q21 peptidylglycine alpha-amidating monooxygenase protein-coding PAM peptidylglycine alpha-amidating monooxygenase O pancreatic peptidylglycine alpha-amidating monooxygenase|peptidyl alpha-amidating enzyme|peptidyl-alpha-hydroxyglycine alpha-amidating lyase|peptidyl-glycine alpha-amidating monooxygenase|peptidylamidoglycolate lyase|peptidylglycine 2-hydroxylase|peptidylglycine alpha-hydroxylating monooxygenase 20121230 -9606 5067 CNTN3 - BIG-1|PANG|PCS HGNC:2173|MIM:601325|Ensembl:ENSG00000113805|Vega:OTTHUMG00000158813 3 3p12.3 contactin 3 (plasmacytoma associated) protein-coding CNTN3 contactin 3 (plasmacytoma associated) O brain-derived immunoglobulin superfamily protein 1|contactin-3|plasmacytoma-associated neuronal glycoprotein 20121230 -9606 5068 REG3A - HIP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 HGNC:8601|MIM:167805|Ensembl:ENSG00000172016|HPRD:01342|Vega:OTTHUMG00000130017 2 2p12 regenerating islet-derived 3 alpha protein-coding REG3A regenerating islet-derived 3 alpha O PAP homologous protein|REG-3-alpha|hepatocarcinoma-intestine-pancreas|human proislet peptide|pancreatic beta cell growth factor|pancreatitis-associated protein 1|proliferation-inducing protein 34|proliferation-inducing protein 42|reg III-alpha|regenerating islet-derived protein 3-alpha|regenerating islet-derived protein III-alpha 20121230 -9606 5069 PAPPA RP11-45A16.1 ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 HGNC:8602|MIM:176385|Ensembl:ENSG00000182752|HPRD:01448|Vega:OTTHUMG00000021045 9 9q33.2 pregnancy-associated plasma protein A, pappalysin 1 protein-coding PAPPA pregnancy-associated plasma protein A, pappalysin 1 O IGF-dependent IGFBP-4 protease|aspecific BCL2 ARE-binding protein 2|differentially placenta 1 expressed protein|insulin-like growth factor-dependent IGF binding protein-4 protease|insulin-like growth factor-dependent IGF-binding protein 4 protease|pappalysin-1|pregnacy-associated plasma protein A 20121230 -9606 5071 PARK2 KB-152G3.1 AR-JP|LPRS2|PDJ|PRKN HGNC:8607|MIM:602544|Ensembl:ENSG00000185345|HPRD:03967|Vega:OTTHUMG00000015970 6 6q25.2-q27 parkinson protein 2, E3 ubiquitin protein ligase (parkin) protein-coding PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) O E3 ubiquitin-protein ligase parkin|Parkinson disease (autosomal recessive, juvenile) 2, parkin|parkinson juvenile disease protein 2 20121230 -9606 5072 PARK3 - - HGNC:8608|MIM:602404 2 2p13 Parkinson disease 3 (autosomal dominant, Lewy body) unknown PARK3 Parkinson disease 3 (autosomal dominant, Lewy body) O - 20120622 -9606 5073 PARN - DAN HGNC:8609|MIM:604212|Ensembl:ENSG00000140694|HPRD:07250|Vega:OTTHUMG00000173199 16 16p13 poly(A)-specific ribonuclease protein-coding PARN poly(A)-specific ribonuclease O deadenylating nuclease|deadenylation nuclease|poly(A)-specific ribonuclease (deadenylation nuclease)|poly(A)-specific ribonuclease PARN|polyadenylate-specific ribonuclease 20121230 -9606 5074 PAWR - PAR4|Par-4 HGNC:8614|MIM:601936|Ensembl:ENSG00000177425|HPRD:09051|Vega:OTTHUMG00000170080 12 12q21 PRKC, apoptosis, WT1, regulator protein-coding PAWR PRKC, apoptosis, WT1, regulator O PRKC apoptosis WT1 regulator protein|WT1-interacting protein|prostate apoptosis response 4 protein|prostate apoptosis response protein 4|prostate apoptosis response protein PAR-4|transcriptional repressor PAR4 20121230 -9606 5075 PAX1 RP5-1065O2.3 HUP48 HGNC:8615|MIM:167411|Ensembl:ENSG00000125813|HPRD:01332|Vega:OTTHUMG00000032034 20 20p11.2 paired box 1 protein-coding PAX1 paired box 1 O paired box gene 1|paired box protein Pax-1|paired domain gene HuP48 20121230 -9606 5076 PAX2 RP11-179B2.1 - HGNC:8616|MIM:167409|Ensembl:ENSG00000075891|HPRD:01330|Vega:OTTHUMG00000018913 10 10q24 paired box 2 protein-coding PAX2 paired box 2 O paired box homeotic gene 2|paired box protein Pax-2 20121230 -9606 5077 PAX3 - CDHS|HUP2|WS1|WS3 HGNC:8617|MIM:606597|Ensembl:ENSG00000135903|HPRD:09421|Vega:OTTHUMG00000133157 2 2q35 paired box 3 protein-coding PAX3 paired box 3 O paired box homeotic gene 3|paired box protein Pax-3|paired domain gene 3|paired domain gene HuP2 20121230 -9606 5078 PAX4 - KPD|MODY9 HGNC:8618|MIM:167413|Ensembl:ENSG00000106331|HPRD:01333|Vega:OTTHUMG00000157562 7 7q32 paired box 4 protein-coding PAX4 paired box 4 O paired box gene 4|paired box protein Pax-4|paired domain gene 4 20121230 -9606 5079 PAX5 - BSAP HGNC:8619|MIM:167414|Ensembl:ENSG00000196092|HPRD:01334|Vega:OTTHUMG00000019907 9 9p13 paired box 5 protein-coding PAX5 paired box 5 O B cell specific activator protein|B-cell lineage specific activator|B-cell-specific transcription factor|paired box homeotic gene 5|paired box protein Pax-5|transcription factor PAX 5 20121230 -9606 5080 PAX6 - AN|AN2|D11S812E|MGDA|WAGR HGNC:8620|MIM:607108|Ensembl:ENSG00000007372|HPRD:06167|Vega:OTTHUMG00000041447 11 11p13 paired box 6 protein-coding PAX6 paired box 6 O aniridia type II protein|oculorhombin|paired box homeotic gene-6|paired box protein Pax-6 20121230 -9606 5081 PAX7 - HUP1|PAX7B|RMS2 HGNC:8621|MIM:167410|Ensembl:ENSG00000009709|HPRD:01331|Vega:OTTHUMG00000002433 1 1p36.13 paired box 7 protein-coding PAX7 paired box 7 O PAX7 transcriptional factor|paired box homeotic gene 7|paired box protein Pax-7|paired domain gene 7 20121230 -9606 5082 PDCL RP11-465F21.2 PhLP HGNC:8770|MIM:604421|Ensembl:ENSG00000136940|HPRD:05108|Vega:OTTHUMG00000020624 9 9q12-q13 phosducin-like protein-coding PDCL phosducin-like O phosducin-like protein 20121230 -9606 5083 PAX9 - STHAG3 HGNC:8623|MIM:167416|Ensembl:ENSG00000198807|HPRD:01336|Vega:OTTHUMG00000140251 14 14q13.3 paired box 9 protein-coding PAX9 paired box 9 O paired box protein Pax-9|paired domain gene 9 20121230 -9606 5084 PBG1 - - HGNC:8627 - - pancreatic beta cell glycoprotein 1 protein-coding PBG1 pancreatic beta cell glycoprotein 1 O - 20080828 -9606 5087 PBX1 - - HGNC:8632|MIM:176310|Ensembl:ENSG00000185630|HPRD:08889|Vega:OTTHUMG00000034307 1 1q23 pre-B-cell leukemia homeobox 1 protein-coding PBX1 pre-B-cell leukemia homeobox 1 O homeobox protein PBX1|homeobox protein PRL|pre-B-cell leukemia transcription factor 1 20121230 -9606 5088 PBX2P1 - PBX2|PBXP1 HGNC:8635 3 3q24 pre-B-cell leukemia homeobox 2 pseudogene 1 pseudo PBX2P1 pre-B-cell leukemia homeobox 2 pseudogene 1 O - 20121230 -9606 5089 PBX2 DAAP-218M18.5 G17|HOX12|PBX2MHC HGNC:8633|MIM:176311|Ensembl:ENSG00000204304|HPRD:08890|Vega:OTTHUMG00000031116 6 6p21.3 pre-B-cell leukemia homeobox 2 protein-coding PBX2 pre-B-cell leukemia homeobox 2 O homeobox 12|homeobox protein PBX2|pre-B-cell leukemia transcription factor 2 20121230 -9606 5090 PBX3 RP11-336P12.1 - HGNC:8634|MIM:176312|Ensembl:ENSG00000167081|HPRD:15938|Vega:OTTHUMG00000020684 9 9q33.3 pre-B-cell leukemia homeobox 3 protein-coding PBX3 pre-B-cell leukemia homeobox 3 O homeobox protein PBX3|pre-B-cell leukemia transcription factor 3 20121230 -9606 5091 PC - PCB HGNC:8636|MIM:608786|Ensembl:ENSG00000173599|HPRD:02032|Vega:OTTHUMG00000167099 11 11q13.4-q13.5 pyruvate carboxylase protein-coding PC pyruvate carboxylase O pyruvate carboxylase, mitochondrial|pyruvic carboxylase 20121230 -9606 5092 PCBD1 - DCOH|PCBD|PCD|PHS HGNC:8646|MIM:126090|Ensembl:ENSG00000166228|HPRD:00523|Vega:OTTHUMG00000018417 10 10q22 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha protein-coding PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha O 4-alpha-hydroxy-tetrahydropterin dehydratase|6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1)|dimerization cofactor of HNF1|dimerizing cofactor for HNF1|phenylalanine hydroxylase-stimulating protein|pterin-4-alpha-carbinolamine dehydratase 20121230 -9606 5093 PCBP1 - HNRPE1|HNRPX|hnRNP-E1|hnRNP-X HGNC:8647|MIM:601209|Ensembl:ENSG00000169564|HPRD:03128|Vega:OTTHUMG00000129645 2 2p13-p12 poly(rC) binding protein 1 protein-coding PCBP1 poly(rC) binding protein 1 O alpha-CP1|heterogeneous nuclear ribonucleoprotein E1|heterogenous nuclear ribonucleoprotein E1|heterogenous nuclear ribonucleoprotein X|nucleic acid-binding protein SUB2.3|poly(rC)-binding protein 1 20121230 -9606 5094 PCBP2 - HNRPE2|hnRNP-E2 HGNC:8648|MIM:601210|Ensembl:ENSG00000197111|HPRD:03129|Vega:OTTHUMG00000169439 12 12q13.12-q13.13 poly(rC) binding protein 2 protein-coding PCBP2 poly(rC) binding protein 2 O alpha-CP2|heterogeneous nuclear ribonucleoprotein E2|heterogenous nuclear ribonucleoprotein E2|hnRNP E2|poly(rC)-binding protein 2 20121230 -9606 5095 PCCA RP11-151A6.1 - HGNC:8653|MIM:232000|Ensembl:ENSG00000175198|HPRD:01981|Vega:OTTHUMG00000017284 13 13q32 propionyl CoA carboxylase, alpha polypeptide protein-coding PCCA propionyl CoA carboxylase, alpha polypeptide O PCCase alpha subunit|pccA complementation group|propanoyl-CoA:carbon dioxide ligase alpha subunit|propionyl Coenzyme A carboxylase, alpha polypeptide|propionyl-CoA carboxylase alpha chain, mitochondrial 20121230 -9606 5096 PCCB - - HGNC:8654|MIM:232050|Ensembl:ENSG00000114054|HPRD:01982|Vega:OTTHUMG00000159792 3 3q21-q22 propionyl CoA carboxylase, beta polypeptide protein-coding PCCB propionyl CoA carboxylase, beta polypeptide O PCCase subunit beta|propanoyl-CoA:carbon dioxide ligase subunit beta|propionyl Coenzyme A carboxylase, beta polypeptide|propionyl-CoA carboxylase beta chain, mitochondrial 20121230 -9606 5097 PCDH1 - PC42|PCDH42 HGNC:8655|MIM:603626|Ensembl:ENSG00000156453|HPRD:04692|Vega:OTTHUMG00000129661 5 5q31.3 protocadherin 1 protein-coding PCDH1 protocadherin 1 O cadherin-like 1|cadherin-like protein 1|protocadherin 42|protocadherin-1|protocadherin-42 20121230 -9606 5098 PCDHGC3 - PC43|PCDH-GAMMA-C3|PCDH2 HGNC:8716|MIM:603627|Ensembl:ENSG00000240184|HPRD:04693|Vega:OTTHUMG00000129613 5 5q31 protocadherin gamma subfamily C, 3 protein-coding PCDHGC3 protocadherin gamma subfamily C, 3 O cadherin-like 2|protocadherin 2|protocadherin 43|protocadherin gamma-C3|protocadherin-2|protocadherin-43 20121230 -9606 5099 PCDH7 - BH-Pcdh|BHPCDH HGNC:8659|MIM:602988|Ensembl:ENSG00000169851|HPRD:04288|Vega:OTTHUMG00000160364 4 4p15 protocadherin 7 protein-coding PCDH7 protocadherin 7 O BH-protocadherin (brain-heart)|brain-heart protocadherin|protocadherin-7 20121230 -9606 5100 PCDH8 - ARCADLIN|PAPC HGNC:8660|MIM:603580|Ensembl:ENSG00000136099|HPRD:04660|Vega:OTTHUMG00000016979 13 13q21.1 protocadherin 8 protein-coding PCDH8 protocadherin 8 O protocadherin-8 20121230 -9606 5101 PCDH9 RP11-335P18.3 - HGNC:8661|MIM:603581|Ensembl:ENSG00000184226|HPRD:04661|Vega:OTTHUMG00000017040 13 13q21.32 protocadherin 9 protein-coding PCDH9 protocadherin 9 O cadherin superfamily protein VR4-11|protocadherin-9 20121230 -9606 5104 SERPINA5 - PAI-3|PAI3|PCI|PCI-B|PLANH3|PROCI HGNC:8723|MIM:601841|Ensembl:ENSG00000188488|HPRD:03503|Vega:OTTHUMG00000170860 14 14q32.1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 protein-coding SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 O acrosomal serine protease inhibitor|plasma serine protease inhibitor|plasminogen activator inhibitor III|plasminogen activator inhibitor-3|protein C inhibitor|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5|serpin A5 20121230 -9606 5105 PCK1 - PEPCK-C|PEPCK1|PEPCKC HGNC:8724|MIM:614168|Ensembl:ENSG00000124253|HPRD:02028|Vega:OTTHUMG00000032825 20 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) protein-coding PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) O PEP carboxykinase|phosphoenolpyruvate carboxykinase, cytosolic|phosphoenolpyruvate carboxykinase, cytosolic [GTP]|phosphoenolpyruvate carboxylase|phosphopyruvate carboxylase 20121230 -9606 5106 PCK2 - PEPCK|PEPCK-M|PEPCK2 HGNC:8725|MIM:614095|Ensembl:ENSG00000100889|HPRD:02026|Vega:OTTHUMG00000028791 14 14q11.2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) protein-coding PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) O PEP carboxykinase|phosphoenolpyruvate carboxykinase [GTP], mitochondrial|phosphoenolpyruvate carboxylase|phosphopyruvate carboxylase 20121230 -9606 5108 PCM1 - PTC4 HGNC:8727|MIM:600299|Ensembl:ENSG00000078674|HPRD:02624|Vega:OTTHUMG00000163699 8 8p22-p21.3 pericentriolar material 1 protein-coding PCM1 pericentriolar material 1 O PCM-1|hPCM-1|pericentriolar material 1 protein|pericentriolar material 1, PCM1 20121230 -9606 5110 PCMT1 - PIMT HGNC:8728|MIM:176851|Ensembl:ENSG00000120265|HPRD:08908|Vega:OTTHUMG00000015794 6 6q24-q25 protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase O L-isoaspartyl protein carboxyl methyltransferase|protein L-isoaspartyl/D-aspartyl methyltransferase|protein-L-isoaspartate(D-aspartate) O-methyltransferase|protein-beta-aspartate methyltransferase 20121230 -9606 5111 PCNA - - HGNC:8729|MIM:176740|Ensembl:ENSG00000132646|HPRD:01456|Vega:OTTHUMG00000031798 20 20pter-p12 proliferating cell nuclear antigen protein-coding PCNA proliferating cell nuclear antigen O DNA polymerase delta auxiliary protein|cyclin 20121230 -9606 5116 PCNT - KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4 HGNC:16068|MIM:605925|Ensembl:ENSG00000160299|HPRD:05804|Vega:OTTHUMG00000090665 21 21q22.3 pericentrin protein-coding PCNT pericentrin O kendrin|pericentrin B|pericentrin-2|pericentrin-380|pericentrin-B 20121230 -9606 5118 PCOLCE - PCPE|PCPE-1|PCPE1 HGNC:8738|MIM:600270|Ensembl:ENSG00000106333|HPRD:02603|Vega:OTTHUMG00000156675 7 7q22 procollagen C-endopeptidase enhancer protein-coding PCOLCE procollagen C-endopeptidase enhancer O procollagen C-endopeptidase enhancer 1|procollagen C-proteinase enhancer 1|procollagen COOH-terminal proteinase enhancer 1|procollagen, type 1, COOH-terminal proteinase enhancer|type 1 procollagen C-proteinase enhancer protein|type I procollagen COOH-terminal proteinase enhancer 20121230 -9606 5119 CHMP1A - CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A HGNC:8740|MIM:164010|Ensembl:ENSG00000131165|HPRD:01237|Vega:OTTHUMG00000169521 16 16q24.3 charged multivesicular body protein 1A protein-coding CHMP1A charged multivesicular body protein 1A O charged multivesicular body protein 1/chromatin modifying protein 1|charged multivesicular body protein 1a|chromatin modifying protein 1A|procollagen (type III) N-endopeptidase|protease, metallo, 1, 33kD|vacuolar protein sorting-associated protein 46-1 20121230 -9606 5120 PCOS1 - PCO|PCO1 HGNC:8741|MIM:184700 19 19p13.2 polycystic ovary syndrome 1 unknown PCOS1 polycystic ovary syndrome 1 O - 20120715 -9606 5121 PCP4 - PEP-19 HGNC:8742|MIM:601629|Ensembl:ENSG00000183036|HPRD:03378|Vega:OTTHUMG00000086731 21 21q22.2 Purkinje cell protein 4 protein-coding PCP4 Purkinje cell protein 4 O brain specific polypeptide PEP19|brain-specific antigen PCP-4|brain-specific polypeptide PEP-19 20121230 -9606 5122 PCSK1 - BMIQ12|NEC1|PC1|PC3|SPC3 HGNC:8743|MIM:162150|Ensembl:ENSG00000175426|HPRD:01201|Vega:OTTHUMG00000122089 5 5q15-q21 proprotein convertase subtilisin/kexin type 1 protein-coding PCSK1 proprotein convertase subtilisin/kexin type 1 O NEC 1|neuroendocrine convertase 1|prohormone convertase 1|prohormone convertase 3 20121230 -9606 5125 PCSK5 RP11-422N19.4 PC5|PC6|PC6A|SPC6 HGNC:8747|MIM:600488|Ensembl:ENSG00000099139|HPRD:08985|Vega:OTTHUMG00000020039 9 9q21.3 proprotein convertase subtilisin/kexin type 5 protein-coding PCSK5 proprotein convertase subtilisin/kexin type 5 O hPC6|prohormone convertase 5|proprotein convertase 6|protease PC6|subtilisin/kexin-like protease PC5 20121230 -9606 5126 PCSK2 - NEC 2|NEC-2|NEC2|PC2|SPC2 HGNC:8744|MIM:162151|Ensembl:ENSG00000125851|HPRD:01202|Vega:OTTHUMG00000031941 20 20p11.2 proprotein convertase subtilisin/kexin type 2 protein-coding PCSK2 proprotein convertase subtilisin/kexin type 2 O KEX2-like endoprotease 2|neuroendocrine convertase 2|prohormone convertase 2 20121230 -9606 5127 CDK16 - PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1 HGNC:8749|MIM:311550|Ensembl:ENSG00000102225|HPRD:02409|Vega:OTTHUMG00000021438 X Xp11 cyclin-dependent kinase 16 protein-coding CDK16 cyclin-dependent kinase 16 O PCTAIRE-motif protein kinase 1|cell division protein kinase 16|serine/threonine-protein kinase PCTAIRE-1 20121230 -9606 5128 CDK17 - PCTAIRE2|PCTK2 HGNC:8750|MIM:603440|Ensembl:ENSG00000059758|HPRD:09141|Vega:OTTHUMG00000170375 12 12q23.1 cyclin-dependent kinase 17 protein-coding CDK17 cyclin-dependent kinase 17 O PCTAIRE-motif protein kinase 2|cell division protein kinase 17|protein kinase cdc2-related PCTAIRE-2|serine/threonine-protein kinase PCTAIRE-2 20121230 -9606 5129 CDK18 RP11-288G13.1 PCTAIRE|PCTAIRE3|PCTK3 HGNC:8751|MIM:169190|Ensembl:ENSG00000117266|HPRD:01354|Vega:OTTHUMG00000037203 1 1q31-q32 cyclin-dependent kinase 18 protein-coding CDK18 cyclin-dependent kinase 18 O PCTAIRE protein kinase 3|PCTAIRE-motif protein kinase 3|cell division protein kinase 18|serine/threonine-protein kinase PCTAIRE-3 20121230 -9606 5130 PCYT1A - CCTA|CT|CTA|CTPCT|PCYT1 HGNC:8754|MIM:123695|Ensembl:ENSG00000161217|HPRD:00438|Vega:OTTHUMG00000155670 3 3q29 phosphate cytidylyltransferase 1, choline, alpha protein-coding PCYT1A phosphate cytidylyltransferase 1, choline, alpha O CCT A|CCT-alpha|CT A|CTP:phosphocholine cytidylyltransferase A|choline-phosphate cytidylyltransferase A|phosphorylcholine transferase A 20121230 -9606 5131 PDB1 - PDB HGNC:8757|MIM:167250 6 6p21.3 Paget disease of bone 1 unknown PDB1 Paget disease of bone 1 O - 20110714 -9606 5132 PDC - MEKA|PHD|PhLOP|PhLP HGNC:8759|MIM:171490|Ensembl:ENSG00000116703|HPRD:01373|Vega:OTTHUMG00000035575 1 1q25.2 phosducin protein-coding PDC phosducin O 33 kDa phototransducing protein|G beta gamma binding protein|phosducin-like orphan protein 20121230 -9606 5133 PDCD1 - CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l HGNC:8760|MIM:600244|Ensembl:ENSG00000188389|HPRD:02590|Vega:OTTHUMG00000151342 2 2q37.3 programmed cell death 1 protein-coding PDCD1 programmed cell death 1 O programmed cell death protein 1|protein PD-1 20121230 -9606 5134 PDCD2 RP1-191N21.2 RP8|ZMYND7 HGNC:8762|MIM:600866|Ensembl:ENSG00000071994|HPRD:02922|Vega:OTTHUMG00000016083 6 6q27 programmed cell death 2 protein-coding PDCD2 programmed cell death 2 O programmed cell death protein 2|zinc finger MYND domain-containing protein 7|zinc finger protein Rp-8 20121230 -9606 5136 PDE1A - CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A HGNC:8774|MIM:171890|Ensembl:ENSG00000115252|HPRD:01387|Vega:OTTHUMG00000132596 2 2q32.1 phosphodiesterase 1A, calmodulin-dependent protein-coding PDE1A phosphodiesterase 1A, calmodulin-dependent O 61 kDa Cam-PDE|calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A|calcium/calmodulin-stimulated cyclic nucleotide phosphodiesterase|cam-PDE 1A 20121230 -9606 5137 PDE1C - Hcam3 HGNC:8776|MIM:602987|Ensembl:ENSG00000154678|HPRD:04287|Vega:OTTHUMG00000023836 7 7p14.3 phosphodiesterase 1C, calmodulin-dependent 70kDa protein-coding PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa O Human 3',5' cyclic nucleotide phosphodiesterase (HSPDE1C1A)|calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C|cam-PDE 1C|hCam-3 20121230 -9606 5138 PDE2A - CGS-PDE|PDE2A1|PED2A4|cGSPDE HGNC:8777|MIM:602658|Ensembl:ENSG00000186642|HPRD:04041|Vega:OTTHUMG00000102045 11 11q13.4 phosphodiesterase 2A, cGMP-stimulated protein-coding PDE2A phosphodiesterase 2A, cGMP-stimulated O cGMP-dependent 3',5'-cyclic phosphodiesterase|cGMP-stimulated phosphodiesterase 1|cGMP-stimulated phosphodiesterase 4|cyclic GMP-stimulated phosphodiesterase 20121230 -9606 5139 PDE3A - CGI-PDE|CGI-PDE A|CGI-PDE-A HGNC:8778|MIM:123805|Ensembl:ENSG00000172572|HPRD:00441|Vega:OTTHUMG00000168962 12 12p12 phosphodiesterase 3A, cGMP-inhibited protein-coding PDE3A phosphodiesterase 3A, cGMP-inhibited O cAMP phosphodiesterase, myocardial cGMP-inhibited|cGMP-inhibited 3',5'-cyclic phosphodiesterase A|cyclic GMP-inhibited phosphodiesterase A 20121230 -9606 5140 PDE3B - HcGIP1|cGIPDE1 HGNC:8779|MIM:602047|Ensembl:ENSG00000152270|HPRD:03626|Vega:OTTHUMG00000165898 11 11p15.1 phosphodiesterase 3B, cGMP-inhibited protein-coding PDE3B phosphodiesterase 3B, cGMP-inhibited O CGI-PDE B|CGIP1|cGMP-inhibited 3',5'-cyclic phosphodiesterase B|cyclic GMP-inhibited phosphodiesterase B|cyclic nucleotide phosphodiesterase 20121230 -9606 5141 PDE4A - DPDE2|PDE4|PDE46 HGNC:8780|MIM:600126|Ensembl:ENSG00000065989|HPRD:02527|Vega:OTTHUMG00000180411 19 19p13.2 phosphodiesterase 4A, cAMP-specific protein-coding PDE4A phosphodiesterase 4A, cAMP-specific O cAMP-specific 3',5'-cyclic phosphodiesterase 4A|phosphodiesterase 4A, cAMP-specific (dunce|phosphodiesterase E2 dunce homolog, Drosophila|phosphodiesterase isozyme 4 20121230 -9606 5142 PDE4B RP5-876C12.1 DPDE4|PDE4B5|PDEIVB HGNC:8781|MIM:600127|Ensembl:ENSG00000184588|HPRD:02528|Vega:OTTHUMG00000009088 1 1p31 phosphodiesterase 4B, cAMP-specific protein-coding PDE4B phosphodiesterase 4B, cAMP-specific O PDE32|cAMP-specific 3',5'-cyclic phosphodiesterase 4B|cAMP-specific phosphodiesterase-4 B isoform|dunce-like phosphodiesterase E4|phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) 20121230 -9606 5143 PDE4C - DPDE1 HGNC:8782|MIM:600128|Ensembl:ENSG00000105650|HPRD:02529 19 19p13.11 phosphodiesterase 4C, cAMP-specific protein-coding PDE4C phosphodiesterase 4C, cAMP-specific O PDE21|cAMP-specific 3',5'-cyclic phosphodiesterase 4C|phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila)|phosphodiesterase E1 dunce homolog 20121230 -9606 5144 PDE4D - ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 HGNC:8783|MIM:600129|Ensembl:ENSG00000113448|HPRD:02530|Vega:OTTHUMG00000162218 5 5q12 phosphodiesterase 4D, cAMP-specific protein-coding PDE4D phosphodiesterase 4D, cAMP-specific O cAMP-specific 3',5'-cyclic phosphodiesterase 4D|cAMP-specific phosphodiesterase PDE4D6|phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) 20121230 -9606 5145 PDE6A - CGPR-A|PDEA|RP43 HGNC:8785|MIM:180071|Ensembl:ENSG00000132915|HPRD:01570|Vega:OTTHUMG00000130047 5 5q31.2-q34 phosphodiesterase 6A, cGMP-specific, rod, alpha protein-coding PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha O GMP-PDE alpha|PDE V-B1|cGMP phosphodiesterase alpha subunit|rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha|rod photoreceptor cGMP phosphodiesterase alpha subunit 20121230 -9606 5146 PDE6C - COD4|PDEA2 HGNC:8787|MIM:600827|Ensembl:ENSG00000095464|HPRD:02898|Vega:OTTHUMG00000018775 10 10q24 phosphodiesterase 6C, cGMP-specific, cone, alpha prime protein-coding PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime O cGMP phosphodiesterase 6C|cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' 20121230 -9606 5147 PDE6D - PDED HGNC:8788|MIM:602676|Ensembl:ENSG00000156973|HPRD:04056|Vega:OTTHUMG00000153785 2 2q35-q36 phosphodiesterase 6D, cGMP-specific, rod, delta protein-coding PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta O GMP-PDE delta|protein p17|retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta 20121230 -9606 5148 PDE6G - PDEG|RP57 HGNC:8789|MIM:180073|Ensembl:ENSG00000185527|HPRD:08914|Vega:OTTHUMG00000178038 17 17q25 phosphodiesterase 6G, cGMP-specific, rod, gamma protein-coding PDE6G phosphodiesterase 6G, cGMP-specific, rod, gamma O GMP-PDE gamma|retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma|rod cG-PDE G 20121230 -9606 5149 PDE6H - ACHM6|RCD3 HGNC:8790|MIM:601190|Ensembl:ENSG00000139053|HPRD:03116|Vega:OTTHUMG00000168743 12 12p13 phosphodiesterase 6H, cGMP-specific, cone, gamma protein-coding PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma O GMP-PDE gamma|retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma 20121230 -9606 5150 PDE7A - HCP1|PDE7 HGNC:8791|MIM:171885|Ensembl:ENSG00000205268|HPRD:01386|Vega:OTTHUMG00000164469 8 8q13 phosphodiesterase 7A protein-coding PDE7A phosphodiesterase 7A O TM22|high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A|phosphodiesterase isozyme 7 20121230 -9606 5151 PDE8A - HsT19550 HGNC:8793|MIM:602972|Ensembl:ENSG00000073417|HPRD:09114|Vega:OTTHUMG00000148670 15 15q25.3 phosphodiesterase 8A protein-coding PDE8A phosphodiesterase 8A O cAMP-specific cyclic nucleotide phosphodiesterase 8A|high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A 20121230 -9606 5152 PDE9A - HSPDE9A2 HGNC:8795|MIM:602973|Ensembl:ENSG00000160191|HPRD:09115|Vega:OTTHUMG00000086825 21 21q22.3 phosphodiesterase 9A protein-coding PDE9A phosphodiesterase 9A O CGMP-specific 3',5'-cyclic phosphodiesterase type 9|high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A|phosphodiesterase PDE9A21 20121230 -9606 5153 PDE1B - PDE1B1|PDES1B HGNC:8775|MIM:171891|Ensembl:ENSG00000123360|HPRD:01388|Vega:OTTHUMG00000169844 12 12q13 phosphodiesterase 1B, calmodulin-dependent protein-coding PDE1B phosphodiesterase 1B, calmodulin-dependent O 63 kDa Cam-PDE|calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B|calcium/calmodulin-stimulated cyclic nucleotide phosphodiesterase|calmodulin-stimulated phosphodiesterase PDE1B1|cam-PDE 1B|presumed 63kDa form of the type 1 cyclic nucleotide phosphodiesterase family known as PDE1B 20121230 -9606 5154 PDGFA - PDGF-A|PDGF1 HGNC:8799|MIM:173430|Ensembl:ENSG00000197461|HPRD:01424|Vega:OTTHUMG00000151412 7 7p22 platelet-derived growth factor alpha polypeptide protein-coding PDGFA platelet-derived growth factor alpha polypeptide O PDGF A-chain|PDGF subunit A|PDGF-1|platelet-derived growth factor A chain|platelet-derived growth factor alpha chain|platelet-derived growth factor alpha isoform 2 preproprotein|platelet-derived growth factor subunit A 20121230 -9606 5155 PDGFB LL22NC03-10C3.2 PDGF2|SIS|SSV|c-sis HGNC:8800|MIM:190040|Ensembl:ENSG00000100311|HPRD:01815|Vega:OTTHUMG00000151029 22 22q13.1 platelet-derived growth factor beta polypeptide protein-coding PDGFB platelet-derived growth factor beta polypeptide O PDGF subunit B|PDGF, B chain|PDGF-2|Platelet-derived growth factor, beta polypeptide (oncogene SIS)|becaplermin|platelet-derived growth factor 2|platelet-derived growth factor B chain|platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog)|platelet-derived growth factor subunit B|platelet-derived growth factor, B chain|proto-oncogene c-Sis 20121230 -9606 5156 PDGFRA - CD140A|PDGFR-2|PDGFR2|RHEPDGFRA HGNC:8803|MIM:173490|Ensembl:ENSG00000134853|HPRD:01429|Vega:OTTHUMG00000128699 4 4q12 platelet-derived growth factor receptor, alpha polypeptide protein-coding PDGFRA platelet-derived growth factor receptor, alpha polypeptide O CD140 antigen-like family member A|CD140a antigen|PDGF-R-alpha|PDGFR-alpha|PDGFRA/BCR fusion|alpha-type platelet-derived growth factor receptor|platelet-derived growth factor receptor 2|platelet-derived growth factor receptor alpha|rearranged-in-hypereosinophilia-platelet derived growth factor receptor alpha fusion protein 20121230 -9606 5157 PDGFRL - PDGRL|PRLTS HGNC:8805|MIM:604584|Ensembl:ENSG00000104213|HPRD:05206|Vega:OTTHUMG00000130818 8 8p22-p21.3 platelet-derived growth factor receptor-like protein-coding PDGFRL platelet-derived growth factor receptor-like O PDGF receptor beta-like tumor suppressor|PDGFR-like protein|platelet-derived growth factor receptor-like protein|platelet-derived growth factor-beta-like tumor suppressor 20121230 -9606 5158 PDE6B - CSNB3|CSNBAD2|PDEB|RP40|rd1 HGNC:8786|MIM:180072|Ensembl:ENSG00000133256|HPRD:01571|Vega:OTTHUMG00000159909 4 4p16.3 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta O GMP-PDE beta|rod cGMP-phosphodiesterase beta-subunit|rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta 20121230 -9606 5159 PDGFRB - CD140B|JTK12|PDGFR|PDGFR-1|PDGFR1 HGNC:8804|MIM:173410|Ensembl:ENSG00000113721|HPRD:01423|Vega:OTTHUMG00000130053 5 5q33.1 platelet-derived growth factor receptor, beta polypeptide protein-coding PDGFRB platelet-derived growth factor receptor, beta polypeptide O CD140 antigen-like family member B|PDGF-R-beta|PDGFR-beta|beta-type platelet-derived growth factor receptor|platelet-derived growth factor receptor 1|platelet-derived growth factor receptor beta 20121230 -9606 5160 PDHA1 RP11-723P2.1 PDHA|PDHCE1A|PHE1A HGNC:8806|MIM:300502|Ensembl:ENSG00000131828|HPRD:02420|Vega:OTTHUMG00000021224 X Xp22.1 pyruvate dehydrogenase (lipoamide) alpha 1 protein-coding PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1 O PDHE1-A type I|pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial|pyruvate dehydrogenase complex, E1-alpha polypeptide 1 20121230 -9606 5161 PDHA2 hCG_1643458 PDHAL HGNC:8807|MIM:179061|Ensembl:ENSG00000163114|HPRD:01531|Vega:OTTHUMG00000130990 4 4q22-q23 pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2 O PDHE1-A type II|pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial|pyruvate dehydrogenase, E1-alpha polypeptide, testis specific 20121230 -9606 5162 PDHB - PDHBD|PDHE1-B|PHE1B HGNC:8808|MIM:179060|Ensembl:ENSG00000168291|HPRD:01530|Vega:OTTHUMG00000159157 3 3p21.1-p14.2 pyruvate dehydrogenase (lipoamide) beta protein-coding PDHB pyruvate dehydrogenase (lipoamide) beta O pyruvate dehydrogenase E1 component subunit beta, mitochondrial|pyruvate dehydrogenase, E1 beta polypeptide 20121230 -9606 5163 PDK1 - - HGNC:8809|MIM:602524|Ensembl:ENSG00000152256|HPRD:03954|Vega:OTTHUMG00000132285 2 2q31.1 pyruvate dehydrogenase kinase, isozyme 1 protein-coding PDK1 pyruvate dehydrogenase kinase, isozyme 1 O mitochondrial pyruvate dehydrogenase, lipoamide, kinase isoenzyme 1|pyruvate dehydrogenase kinase, isoenzyme 1 20121230 -9606 5164 PDK2 - PDHK2 HGNC:8810|MIM:602525|Ensembl:ENSG00000005882|HPRD:03955|Vega:OTTHUMG00000161948 17 17q21.33 pyruvate dehydrogenase kinase, isozyme 2 protein-coding PDK2 pyruvate dehydrogenase kinase, isozyme 2 O pyruvate dehydrogenase kinase, isoenzyme 2|pyruvate dehydrogenase, lipoamide, kinase isozyme 2, mitochondrial 20121230 -9606 5165 PDK3 - - HGNC:8811|MIM:602526|Ensembl:ENSG00000067992|HPRD:03956|Vega:OTTHUMG00000021269 X Xp22.11 pyruvate dehydrogenase kinase, isozyme 3 protein-coding PDK3 pyruvate dehydrogenase kinase, isozyme 3 O pyruvate dehydrogenase kinase, isoenzyme 3|pyruvate dehydrogenase, lipoamide, kinase isozyme 3, mitochondrial 20121230 -9606 5166 PDK4 - - HGNC:8812|MIM:602527|Ensembl:ENSG00000004799|HPRD:03957|Vega:OTTHUMG00000153977 7 7q21.3 pyruvate dehydrogenase kinase, isozyme 4 protein-coding PDK4 pyruvate dehydrogenase kinase, isozyme 4 O [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial|pyruvate dehydrogenase kinase, isoenzyme 4|pyruvate dehydrogenase, lipoamide, kinase isozyme 4, mitochondrial 20121230 -9606 5167 ENPP1 - ARHR2|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 HGNC:3356|MIM:173335|Ensembl:ENSG00000197594|HPRD:01415|Vega:OTTHUMG00000015572 6 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 O E-NPP 1|Ly-41 antigen|alkaline phosphodiesterase 1|ectonucleotide pyrophosphatase/phosphodiesterase family member 1|membrane component chromosome 6 surface marker 1|membrane component, chromosome 6, surface marker 1|phosphodiesterase I/nucleotide pyrophosphatase 1|plasma-cell membrane glycoprotein 1|plasma-cell membrane glycoprotein PC-1 20121230 -9606 5168 ENPP2 - ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 HGNC:3357|MIM:601060|Ensembl:ENSG00000136960|HPRD:03037|Vega:OTTHUMG00000164995 8 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 O E-NPP 2|autotaxin-t|ectonucleotide pyrophosphatase/phosphodiesterase family member 2|extracellular lysophospholipase D|phosphodiesterase I/nucleotide pyrophosphatase 2|plasma lysophospholipase D 20121230 -9606 5169 ENPP3 RP5-988G15.3 B10|CD203c|NPP3|PD-IBETA|PDNP3 HGNC:3358|MIM:602182|Ensembl:ENSG00000154269|HPRD:03715|Vega:OTTHUMG00000016292 6 6q22 ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 O E-NPP 3|dJ1005H11.3 (phosphodiesterase I/nucleotide pyrophosphatase 3)|dJ914N13.3 (phosphodiesterase I/nucleotide pyrophosphatase 3)|ectonucleotide pyrophosphatase/phosphodiesterase family member 3|gp130RB13-6|phosphodiesterase I beta|phosphodiesterase I/nucleotide pyrophosphatase 3|phosphodiesterase-I beta 20121230 -9606 5170 PDPK1 - PDK1|PRO0461 HGNC:8816|MIM:605213|Ensembl:ENSG00000140992|HPRD:05556|Vega:OTTHUMG00000128874 16 16p13.3 3-phosphoinositide dependent protein kinase-1 protein-coding PDPK1 3-phosphoinositide dependent protein kinase-1 O 3-phosphoinositide-dependent protein kinase 1|PkB kinase like gene 1|PkB-like 1 20121230 -9606 5171 PDR - - HGNC:8817|MIM:301220 X Xp22-p21 pigment disorder, reticulate unknown PDR pigment disorder, reticulate O - 20120622 -9606 5172 SLC26A4 - DFNB4|EVA|PDS|TDH2B HGNC:8818|MIM:605646|Ensembl:ENSG00000091137|HPRD:05735|Vega:OTTHUMG00000154807 7 7q31 solute carrier family 26, member 4 protein-coding SLC26A4 solute carrier family 26, member 4 O pendrin|sodium-independent chloride/iodide transporter 20121230 -9606 5173 PDYN - ADCA|PENKB|SCA23 HGNC:8820|MIM:131340|Ensembl:ENSG00000101327|HPRD:08838|Vega:OTTHUMG00000031683 20 20p13 prodynorphin protein-coding PDYN prodynorphin O beta-neoendorphin-dynorphin|leu-enkephalin|leumorphin|neoendorphin-dynorphin-enkephalin prepropeptide|preprodynorphin|preproenkephalin B|proenkephalin-B|rimorphin 20121230 -9606 5174 PDZK1 - CAP70|CLAMP|NHERF-3|NHERF3|PDZD1 HGNC:8821|MIM:603831|Ensembl:ENSG00000174827|HPRD:04829|Vega:OTTHUMG00000013735 1 1q21 PDZ domain containing 1 protein-coding PDZK1 PDZ domain containing 1 O CFTR-associated protein of 70 kDa|Na(+)/H(+) exchange regulatory cofactor NHE-RF3|PDZ-containing kidney protein 1|na/Pi cotransporter C-terminal-associated protein 1|naPi-Cap1|sodium-hydrogen exchanger regulatory factor 3 20121230 -9606 5175 PECAM1 - CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM HGNC:8823|MIM:173445|HPRD:01425 17 17q23.3 platelet/endothelial cell adhesion molecule 1 protein-coding PECAM1 platelet/endothelial cell adhesion molecule 1 O CD31 antigen|platelet endothelial cell adhesion molecule 20121230 -9606 5176 SERPINF1 PIG35 EPC-1|OI12|OI6|PEDF HGNC:8824|MIM:172860|Ensembl:ENSG00000132386|HPRD:01408|Vega:OTTHUMG00000090571 17 17p13.3 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 protein-coding SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 O cell proliferation-inducing gene 35 protein|pigment epithelium-derived factor|serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1|serpin F1 20121230 -9606 5177 PEE1 - PEE|PREG1 HGNC:8825|RGD:1298515|MIM:189800 2 2p13 preeclampsia/eclampsia 1 unknown PEE1 preeclampsia/eclampsia 1 O - 20120809 -9606 5178 PEG3 hCG_1685807 PW1|ZNF904|ZSCAN24 HGNC:8826|MIM:601483|Ensembl:ENSG00000198300|HPRD:03285 19 19q13.4 paternally expressed 3 protein-coding PEG3 paternally expressed 3 O Kruppel-type zinc finger protein|paternally-expressed gene 3 protein|zinc finger and SCAN domain-containing protein 24 20121230 -9606 5179 PENK - - HGNC:8831|MIM:131330|Ensembl:ENSG00000181195|HPRD:08837|Vega:OTTHUMG00000164409 8 8q23-q24 proenkephalin protein-coding PENK proenkephalin O enkephalin A|preproenkephalin|proenkephalin-A 20121230 -9606 5182 PEPB - - HGNC:8838|MIM:169900 12 12q21 peptidase B protein-coding PEPB peptidase B O - 20080828 -9606 5183 PEPC - - HGNC:8839|MIM:170000 1 1q25 peptidase C protein-coding PEPC peptidase C O - 20080828 -9606 5184 PEPD - PROLIDASE HGNC:8840|MIM:613230|Ensembl:ENSG00000124299|HPRD:01358|Vega:OTTHUMG00000180470 19 19q13.11 peptidase D protein-coding PEPD peptidase D O X-Pro dipeptidase|aminoacyl-L-proline hydrolase|imidodipeptidase|proline dipeptidase|xaa-Pro dipeptidase 20121230 -9606 5185 PEPE - - HGNC:8841|MIM:170200 17 17q23-qter peptidase E protein-coding PEPE peptidase E O - 20080828 -9606 5187 PER1 - PER|RIGUI|hPER HGNC:8845|MIM:602260|Ensembl:ENSG00000179094|HPRD:03774|Vega:OTTHUMG00000178317 17 17p13.1 period circadian clock 1 protein-coding PER1 period circadian clock 1 O Period, drosophila, homolog of|circadian clock protein PERIOD 1|circadian pacemaker protein RIGUI|hPER1|period circadian protein homolog 1|period homolog 1 20121230 -9606 5188 PET112 HSPC199 PET112L HGNC:8849|MIM:603645|Ensembl:ENSG00000059691|HPRD:04706|Vega:OTTHUMG00000161672 4 4q31.3 PET112 homolog (yeast) protein-coding PET112 PET112 homolog (yeast) O cytochrome oxidase assembly factor PET112 homolog|glu-ADT subunit B|glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial 20121230 -9606 5189 PEX1 tcag7.1018 PBD1A|PBD1B|ZWS|ZWS1 HGNC:8850|MIM:602136|Ensembl:ENSG00000127980|HPRD:03682|Vega:OTTHUMG00000023926 7 7q21.2 peroxisomal biogenesis factor 1 protein-coding PEX1 peroxisomal biogenesis factor 1 O Zellweger syndrome|peroxin-1|peroxisome biogenesis disorder protein 1|peroxisome biogenesis factor 1 20121230 -9606 5190 PEX6 RP1-125M3.3 PAF-2|PAF2|PBD4A|PDB4B|PXAAA1 HGNC:8859|MIM:601498|Ensembl:ENSG00000124587|HPRD:03293|Vega:OTTHUMG00000014713 6 6p21.1 peroxisomal biogenesis factor 6 protein-coding PEX6 peroxisomal biogenesis factor 6 O peroxin-6|peroxisomal AAA-type ATPase 1|peroxisomal-type ATPase 1|peroxisome assembly factor 2|peroxisome biogenesis factor 6 20121230 -9606 5191 PEX7 RP11-55K22.6 PBD9B|PTS2R|RCDP1|RD HGNC:8860|MIM:601757|Ensembl:ENSG00000112357|HPRD:03454|Vega:OTTHUMG00000015650 6 6q23.3 peroxisomal biogenesis factor 7 protein-coding PEX7 peroxisomal biogenesis factor 7 O PTS2 receptor|peroxin-7|peroxisomal PTS2 receptor|peroxisomal targeting signal 2 receptor|peroxisome targeting signal 2 receptor 20121230 -9606 5192 PEX10 - NALD|PBD6A|PBD6B|RNF69 HGNC:8851|MIM:602859|Ensembl:ENSG00000157911|HPRD:04175|Vega:OTTHUMG00000001637 1 1p36.32 peroxisomal biogenesis factor 10 protein-coding PEX10 peroxisomal biogenesis factor 10 O RING finger protein 69|peroxin 10|peroxin-10|peroxisome assembly protein 10|peroxisome biogenesis factor 10 20121230 -9606 5193 PEX12 - PAF-3|PBD3A HGNC:8854|MIM:601758|Ensembl:ENSG00000108733|HPRD:03455|Vega:OTTHUMG00000132951 17 17q12 peroxisomal biogenesis factor 12 protein-coding PEX12 peroxisomal biogenesis factor 12 O peroxin 12|peroxin-12|peroxisome assembly factor 3|peroxisome assembly protein 12 20121230 -9606 5194 PEX13 - NALD|PBD11A|PBD11B|ZWS HGNC:8855|MIM:601789|Ensembl:ENSG00000162928|HPRD:03475|Vega:OTTHUMG00000129422 2 2p16.1 peroxisomal biogenesis factor 13 protein-coding PEX13 peroxisomal biogenesis factor 13 O peroxin-13|peroxisomal membrane protein PEX13|peroxisome biogenesis factor 13 20121230 -9606 5195 PEX14 - NAPP2|PBD13A|Pex14p|dJ734G22.2 HGNC:8856|MIM:601791|Ensembl:ENSG00000142655|HPRD:03477|Vega:OTTHUMG00000001908 1 1p36.22 peroxisomal biogenesis factor 14 protein-coding PEX14 peroxisomal biogenesis factor 14 O NF-E2 associated polypeptide 2|PTS1 receptor docking protein|PTS1 receptor-docking protein|peroxin-14|peroxisomal membrane anchor protein PEX14|peroxisomal membrane anchor protein Pex14p|peroxisomal membrane protein PEX14 20121230 -9606 5196 PF4 - CXCL4|PF-4|SCYB4 HGNC:8861|MIM:173460|Ensembl:ENSG00000163737|HPRD:01426|Vega:OTTHUMG00000130009 4 4q12-q21 platelet factor 4 protein-coding PF4 platelet factor 4 O C-X-C motif chemokine 4|chemokine (C-X-C motif) ligand 4|iroplact|oncostatin-A 20121230 -9606 5197 PF4V1 - CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1 HGNC:8862|MIM:173461|Ensembl:ENSG00000109272|HPRD:01427|Vega:OTTHUMG00000130177 4 4q12-q21 platelet factor 4 variant 1 protein-coding PF4V1 platelet factor 4 variant 1 O C-X-C motif chemokine 4|PF4alt|PF4var1|platelet factor 4 variant|platelet factor 4, variant 1 (PF4-like) 20121230 -9606 5198 PFAS - FGAMS|FGARAT|PURL HGNC:8863|MIM:602133|Ensembl:ENSG00000178921|HPRD:09072|Vega:OTTHUMG00000108188 17 17p13.1 phosphoribosylformylglycinamidine synthase protein-coding PFAS phosphoribosylformylglycinamidine synthase O FGAM synthase|FGAR amidotransferase|formylglycinamide ribotide amidotransferase|formylglycinamide ribotide synthetase 20121230 -9606 5199 CFP - BFD|PFC|PFD|PROPERDIN HGNC:8864|MIM:300383|Ensembl:ENSG00000126759|HPRD:02308|Vega:OTTHUMG00000021451 X Xp11.4 complement factor properdin protein-coding CFP complement factor properdin O complement factor P|properdin|properdin P factor, complement 20121230 -9606 5201 PFDN1 - PDF|PFD1 HGNC:8866|MIM:604897|Ensembl:ENSG00000113068|HPRD:05357|Vega:OTTHUMG00000129249 5 5q31 prefoldin subunit 1 protein-coding PFDN1 prefoldin subunit 1 O prefoldin 1 20121230 -9606 5202 PFDN2 HSPC231 PFD2 HGNC:8867|MIM:613466|Ensembl:ENSG00000143256|HPRD:09658|Vega:OTTHUMG00000031481 1 1q23.3 prefoldin subunit 2 protein-coding PFDN2 prefoldin subunit 2 O prefoldin 2 20121230 -9606 5203 PFDN4 - C1|PFD4 HGNC:8868|MIM:604898|Ensembl:ENSG00000101132|HPRD:05358|Vega:OTTHUMG00000032775 20 20q13.2 prefoldin subunit 4 protein-coding PFDN4 prefoldin subunit 4 O prefoldin 4|protein C-1 20121230 -9606 5204 PFDN5 - MM-1|MM1|PFD5 HGNC:8869|MIM:604899|Ensembl:ENSG00000123349|Vega:OTTHUMG00000169675 12 12q12 prefoldin subunit 5 protein-coding PFDN5 prefoldin subunit 5 O c-myc binding protein|myc modulator-1 20121230 -9606 5205 ATP8B1 - ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 HGNC:3706|MIM:602397|Ensembl:ENSG00000081923|HPRD:03867|Vega:OTTHUMG00000180255 18 18q21.31 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding ATP8B1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 O ATPase, class I, type 8B, member 1|E1-E2 ATPase|familial intrahepatic cholestasis type 1|phospholipid-transporting ATPase IC|probable phospholipid-transporting ATPase IC 20121230 -9606 5207 PFKFB1 - F6PK|HL2K|PFRX HGNC:8872|MIM:311790|Ensembl:ENSG00000158571|HPRD:02411|Vega:OTTHUMG00000021643 X Xp11.21 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 protein-coding PFKFB1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 O 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1|6PF-2-K/Fru-2,6-P2ASE liver isozyme|6PF-2-K/Fru-2,6-P2ase 1|PFK/FBPase 1|fructose-6-phosphate,2-kinase:fructose-2,6-bisphosphatase 20121230 -9606 5208 PFKFB2 RP11-164O23.2 PFK-2/FBPase-2 HGNC:8873|MIM:171835|Ensembl:ENSG00000123836|HPRD:01383|Vega:OTTHUMG00000036033 1 1q31 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 O 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2|6PF-2-K/Fru-2,6-P2ASE heart-type isozyme|6PF-2-K/Fru-2,6-P2ase 2|PFK/FBPase 2|PFKFB, cardiac|fructose-2,6-bisphosphatase, cardiac isozyme 20121230 -9606 5209 PFKFB3 RP11-298K24.3 IPFK2|PFK2 HGNC:8874|MIM:605319|Ensembl:ENSG00000170525|HPRD:05612|Vega:OTTHUMG00000017621 10 10p15.1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 O 6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase|6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase|6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3|6PF-2-K/Fru-2,6-P2ase 3|6PF-2-K/Fru-2,6-P2ase brain/placenta-type isozyme|PFK/FBPase 3|fructose-6-phosphate,2-kinase/fructose-2, 6-bisphosphatase|iPFK-2|inducible 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase|renal carcinoma antigen NY-REN-56 20121230 -9606 5210 PFKFB4 - - HGNC:8875|MIM:605320|Ensembl:ENSG00000114268|HPRD:05613|Vega:OTTHUMG00000133528 3 3p22-p21 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 protein-coding PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 O 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-4|6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4|6PF-2-K/Fru-2,6-P2ase 4|6PF-2-K/Fru-2,6-P2ase testis-type isozyme|PFK/FBPase 4|bifunctional enzyme with kinase and biphosphatase activities 20121230 -9606 5211 PFKL - PFK-B HGNC:8876|MIM:171860|Ensembl:ENSG00000141959|HPRD:01385|Vega:OTTHUMG00000086910 21 21q22.3 phosphofructokinase, liver protein-coding PFKL phosphofructokinase, liver O 6-phosphofructokinase, liver type|liver-type 1-phosphofructokinase|phosphofructo-1-kinase isozyme B|phosphofructokinase 1|phosphohexokinase 20121230 -9606 5212 VIT UNQ647/PRO1277 - HGNC:12697|Ensembl:ENSG00000205221|HPRD:18284|Vega:OTTHUMG00000152149 2 2p22.2 vitrin protein-coding VIT vitrin O - 20121230 -9606 5213 PFKM - GSD7|PFK-1|PFK1|PFKA|PFKX HGNC:8877|MIM:610681|Ensembl:ENSG00000152556|HPRD:01988|Vega:OTTHUMG00000169898 12 12q13.3 phosphofructokinase, muscle protein-coding PFKM phosphofructokinase, muscle O 6-phosphofructo-1-kinase|6-phosphofructokinase, muscle type|PFK-A|phosphofructo-1-kinase isozyme A|phosphofructokinase 1|phosphofructokinase, polypeptide X|phosphofructokinase-M|phosphohexokinase 20121230 -9606 5214 PFKP RP11-298E9.2 PFK-C|PFKF HGNC:8878|MIM:171840|Ensembl:ENSG00000067057|HPRD:01384|Vega:OTTHUMG00000017556 10 10p15.3-p15.2 phosphofructokinase, platelet protein-coding PFKP phosphofructokinase, platelet O 6-phosphofructokinase type C|6-phosphofructokinase, platelet type|Phosphofructokinase, platelet type|phosphofructo-1-kinase isozyme C|phosphofructokinase 1|phosphohexokinase 20121230 -9606 5216 PFN1 - ALS18 HGNC:8881|MIM:176610|Ensembl:ENSG00000108518|HPRD:01452|Vega:OTTHUMG00000099396 17 17p13.3 profilin 1 protein-coding PFN1 profilin 1 O epididymis tissue protein Li 184a|profilin I|profilin-1 20121230 -9606 5217 PFN2 - D3S1319E|PFL HGNC:8882|MIM:176590|Ensembl:ENSG00000070087|HPRD:01451|Vega:OTTHUMG00000159683 3 3q25.1 profilin 2 protein-coding PFN2 profilin 2 O profilin II|profilin-2 20121230 -9606 5218 CDK14 - PFTAIRE1|PFTK1 HGNC:8883|MIM:610679|Ensembl:ENSG00000058091|HPRD:15121|Vega:OTTHUMG00000023649 7 7q21-q22 cyclin-dependent kinase 14 protein-coding CDK14 cyclin-dependent kinase 14 O PFTAIRE protein kinase 1|cell division protein kinase 14|hPFTAIRE1|serine/threonine-protein kinase PFTAIRE-1 20121230 -9606 5222 PGA5 - PGA3|PGA4 HGNC:8887|MIM:169730|Ensembl:ENSG00000256713|HPRD:01356|Vega:OTTHUMG00000168075 11 11q13 pepsinogen 5, group I (pepsinogen A) protein-coding PGA5 pepsinogen 5, group I (pepsinogen A) O pepsin A|pepsin A-5|pepsinogen A5|pepsinogen-5 20121230 -9606 5223 PGAM1 RP11-452K12.8 PGAM-B|PGAMA HGNC:8888|MIM:172250|Ensembl:ENSG00000171314|HPRD:01392|Vega:OTTHUMG00000018846 10 10q25.3 phosphoglycerate mutase 1 (brain) protein-coding PGAM1 phosphoglycerate mutase 1 (brain) O BPG-dependent PGAM 1|phosphoglycerate mutase 1|phosphoglycerate mutase A, nonmuscle form|phosphoglycerate mutase isozyme B 20121230 -9606 5224 PGAM2 - GSD10|PGAM-M|PGAMM HGNC:8889|MIM:612931|Ensembl:ENSG00000164708|HPRD:02027|Vega:OTTHUMG00000155355 7 7p13-p12 phosphoglycerate mutase 2 (muscle) protein-coding PGAM2 phosphoglycerate mutase 2 (muscle) O BPG-dependent PGAM 2|muscle-specific phosphoglycerate mutase|phosphoglycerate mutase 2|phosphoglycerate mutase isozyme M 20121230 -9606 5225 PGC RP11-298J23.1 PEPC|PGII HGNC:8890|MIM:169740|Ensembl:ENSG00000096088|HPRD:01357|Vega:OTTHUMG00000014683 6 6p21.1 progastricsin (pepsinogen C) protein-coding PGC progastricsin (pepsinogen C) O gastricsin|pepsin C|pepsinogen C|pepsinogen group II|preprogastricsin 20121230 -9606 5226 PGD - 6PGD HGNC:8891|MIM:172200|Ensembl:ENSG00000142657|HPRD:01391|Vega:OTTHUMG00000001905 1 1p36.22 phosphogluconate dehydrogenase protein-coding PGD phosphogluconate dehydrogenase O 6-phosphogluconate dehydrogenase, decarboxylating 20121230 -9606 5228 PGF - D12S1900|PGFL|PLGF|PlGF-2|SHGC-10760 HGNC:8893|MIM:601121|Ensembl:ENSG00000119630|HPRD:03076|Vega:OTTHUMG00000171496 14 14q24.3 placental growth factor protein-coding PGF placental growth factor O placenta growth factor|placental growth factor, vascular endothelial growth factor-related protein 20121230 -9606 5229 PGGT1B - BGGI|GGTI HGNC:8895|MIM:602031|Ensembl:ENSG00000164219|HPRD:03612|Vega:OTTHUMG00000128893 5 5q22.3 protein geranylgeranyltransferase type I, beta subunit protein-coding PGGT1B protein geranylgeranyltransferase type I, beta subunit O GGTase-I-beta|geranylgeranyl transferase type I subunit beta|geranylgeranyl transferase type-1 subunit beta|geranylgeranyltransferase type I beta subunit|type I protein geranyl-geranyltransferase subunit beta 20121230 -9606 5230 PGK1 RP4-570L12.1 MIG10|PGKA HGNC:8896|MIM:311800|Ensembl:ENSG00000102144|HPRD:02412|Vega:OTTHUMG00000021888 X Xq13.3 phosphoglycerate kinase 1 protein-coding PGK1 phosphoglycerate kinase 1 O PRP 2|cell migration-inducing gene 10 protein|primer recognition protein 2 20121230 -9606 5231 PGK1P1 - - HGNC:8897 X Xq12 phosphoglycerate kinase 1, pseudogene 1 pseudo PGK1P1 phosphoglycerate kinase 1, pseudogene 1 O - 20121230 -9606 5232 PGK2 - PGKB|PGKPS|dJ417L20.2 HGNC:8898|MIM:172270|Ensembl:ENSG00000170950|HPRD:01393|Vega:OTTHUMG00000014824 6 6p12.3 phosphoglycerate kinase 2 protein-coding PGK2 phosphoglycerate kinase 2 O phosphoglycerate kinase autosomal pseudogene|phosphoglycerate kinase, testis specific 20121230 -9606 5233 PGK1P2 - PGK2 HGNC:8899 19 19p13.3 phosphoglycerate kinase 1, pseudogene 2 pseudo PGK1P2 phosphoglycerate kinase 1, pseudogene 2 O - 20121230 -9606 5236 PGM1 - CDG1T|GSD14 HGNC:8905|MIM:171900|Ensembl:ENSG00000079739|HPRD:01389|Vega:OTTHUMG00000008968 1 1p31 phosphoglucomutase 1 protein-coding PGM1 phosphoglucomutase 1 O PGM 1|glucose phosphomutase 1|phosphoglucomutase-1 20121230 -9606 5238 PGM3 - AGM1|PAGM|PGM 3 HGNC:8907|MIM:172100|Ensembl:ENSG00000013375|HPRD:01390|Vega:OTTHUMG00000015110 6 6q14.1-q15 phosphoglucomutase 3 protein-coding PGM3 phosphoglucomutase 3 O N-acetylglucosamine-phosphate mutase 1|acetylglucosamine phosphomutase|phosphoacetylglucosamine mutase 20121230 -9606 5239 PGM5 RP11-274B18.5 PGMRP HGNC:8908|MIM:600981|Ensembl:ENSG00000154330|HPRD:02990|Vega:OTTHUMG00000019966 9 9q13 phosphoglucomutase 5 protein-coding PGM5 phosphoglucomutase 5 O PGM-RP|aciculin|phosphoglucomutase-like protein 5|phosphoglucomutase-related protein 20121230 -9606 5241 PGR - NR3C3|PR HGNC:8910|MIM:607311|Ensembl:ENSG00000082175|HPRD:07077|Vega:OTTHUMG00000167531 11 11q22-q23 progesterone receptor protein-coding PGR progesterone receptor O nuclear receptor subfamily 3 group C member 3 20121230 -9606 5242 MRXS5 - PGS HGNC:8911|MIM:304340 X Xq25-q27 mental retardation, X-linked, syndromic 5 unknown MRXS5 mental retardation, X-linked, syndromic 5 O - 20120622 -9606 5243 ABCB1 - ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 HGNC:40|MIM:171050|Ensembl:ENSG00000085563|HPRD:01370|Vega:OTTHUMG00000023393 7 7q21.12 ATP-binding cassette, sub-family B (MDR/TAP), member 1 protein-coding ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 O P-glycoprotein 1|colchicin sensitivity|doxorubicin resistance|multidrug resistance protein 1 20121230 -9606 5244 ABCB4 - ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 HGNC:45|MIM:171060|Ensembl:ENSG00000005471|HPRD:01371|Vega:OTTHUMG00000023396 7 7q21.1 ATP-binding cassette, sub-family B (MDR/TAP), member 4 protein-coding ABCB4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 O ATP-binding cassette sub-family B member 4|P glycoprotein 3/multiple drug resistance 3|P-glycoprotein 3|P-glycoprotein-3/multiple drug resistance-3|multidrug resistance protein 3|multiple drug resistance 3 20121230 -9606 5245 PHB - PHB1 HGNC:8912|MIM:176705|Ensembl:ENSG00000167085|HPRD:01454|Vega:OTTHUMG00000134271 17 17q21 prohibitin protein-coding PHB prohibitin O - 20121230 -9606 5246 PHBP1 - - HGNC:8913 6 6q25 prohibitin pseudogene 1 pseudo PHBP1 prohibitin pseudogene 1 O - 20121230 -9606 5250 SLC25A3 OK/SW-cl.48 PHC|PTP HGNC:10989|MIM:600370|Ensembl:ENSG00000075415|HPRD:02654|Vega:OTTHUMG00000170212 12 12q23 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 protein-coding SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 O mitochondrial phosphate carrier protein|phosphate carrier protein, mitochondrial|phosphate transport protein|solute carrier family 25 member 3 20121230 -9606 5251 PHEX - HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH HGNC:8918|MIM:300550|Ensembl:ENSG00000102174|HPRD:02387|Vega:OTTHUMG00000021241 X Xp22.2-p22.1 phosphate regulating endopeptidase homolog, X-linked protein-coding PHEX phosphate regulating endopeptidase homolog, X-linked O X-linked hypophosphatemia protein|metalloendopeptidase homolog PEX|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)|phosphate-regulating neutral endopeptidase|vitamin D-resistant hypophosphatemic rickets protein 20121230 -9606 5252 PHF1 DASS-97D12.4 MTF2L2|PCL1|PHF2 HGNC:8919|MIM:602881|Ensembl:ENSG00000112511|HPRD:04195|Vega:OTTHUMG00000031105 6 6p21.3 PHD finger protein 1 protein-coding PHF1 PHD finger protein 1 O hPCl1|polycomb-like protein 1 20121230 -9606 5253 PHF2 - CENP-35|GRC5|JHDM1E HGNC:8920|MIM:604351|Ensembl:ENSG00000197724|HPRD:05071|Vega:OTTHUMG00000020253 9 9q22.31 PHD finger protein 2 protein-coding PHF2 PHD finger protein 2 O centromere protein 35|jumonji C domain-containing histone demethylase 1E|lysine-specific demethylase PHF2 20121230 -9606 5255 PHKA1 - PHKA HGNC:8925|MIM:311870|Ensembl:ENSG00000067177|HPRD:02415|Vega:OTTHUMG00000022696 X Xq12-q13 phosphorylase kinase, alpha 1 (muscle) protein-coding PHKA1 phosphorylase kinase, alpha 1 (muscle) O phosphorylase b kinase regulatory subunit alpha skeletal muscle isoform|phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform|phosphorylase kinase alpha M subunit|phosphorylase kinase, alpha 1 (muscle), muscle glycogenosis 20121230 -9606 5256 PHKA2 RP3-499B10.2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 HGNC:8926|MIM:300798|Ensembl:ENSG00000044446|HPRD:02380|Vega:OTTHUMG00000021222 X Xp22.2-p22.1 phosphorylase kinase, alpha 2 (liver) protein-coding PHKA2 phosphorylase kinase, alpha 2 (liver) O phosphorylase b kinase regulatory subunit alpha liver isoform|phosphorylase b kinase regulatory subunit alpha, liver isoform|phosphorylase kinase alpha L subunit|phosphorylase kinase alpha-subunit 20121230 -9606 5257 PHKB - - HGNC:8927|MIM:172490|Ensembl:ENSG00000102893|HPRD:01407|Vega:OTTHUMG00000133102 16 16q12-q13 phosphorylase kinase, beta protein-coding PHKB phosphorylase kinase, beta O phosphorylase b kinase regulatory subunit beta|phosphorylase kinase beta-subunit|phosphorylase kinase subunit beta 20121230 -9606 5258 PHKBP1 - - HGNC:8928 20 20p12.3-p12.2 phosphorylase kinase, beta pseudogene 1 pseudo PHKBP1 phosphorylase kinase, beta pseudogene 1 O - 20121230 -9606 5259 PHKBP2 - - HGNC:8929 14 14q13.3 phosphorylase kinase, beta pseudogene 2 pseudo PHKBP2 phosphorylase kinase, beta pseudogene 2 O - 20121230 -9606 5260 PHKG1 - PHKG HGNC:8930|MIM:172470|Ensembl:ENSG00000164776|HPRD:01404|Vega:OTTHUMG00000023869 7 7p11.2 phosphorylase kinase, gamma 1 (muscle) protein-coding PHKG1 phosphorylase kinase, gamma 1 (muscle) O phosphorylase b kinase gamma catalytic chain, skeletal muscle isoform|phosphorylase kinase gamma|phosphorylase kinase subunit gamma-1 20121230 -9606 5261 PHKG2 - GSD9C HGNC:8931|MIM:172471|Ensembl:ENSG00000156873|HPRD:01405|Vega:OTTHUMG00000132400 16 16p11.2 phosphorylase kinase, gamma 2 (testis) protein-coding PHKG2 phosphorylase kinase, gamma 2 (testis) O PHK-gamma-T|PSK-C3|Phosphorylase kinase, gamma 2 (testis/liver)|phosphorylase b kinase gamma catalytic chain, testis/liver isoform|phosphorylase kinase subunit gamma-2|serine/threonine-protein kinase PHKG2 20121230 -9606 5262 PHKG1P3 - PHKGL|PHKg1ps2 HGNC:8932 11 11p11.12 phosphorylase kinase, gamma 1 pseudogene 3 pseudo PHKG1P3 phosphorylase kinase, gamma 1 pseudogene 3 O - 20121230 -9606 5264 PHYH RP11-24J20.1 LN1|LNAP1|PAHX|PHYH1|RD HGNC:8940|MIM:602026|Ensembl:ENSG00000107537|HPRD:03609|Vega:OTTHUMG00000017693 10 10p13 phytanoyl-CoA 2-hydroxylase protein-coding PHYH phytanoyl-CoA 2-hydroxylase O phytanic acid oxidase|phytanoil-CoA alpha hydroxylase|phytanoyl-CoA 2 oxoglutarate dioxygenase|phytanoyl-CoA alpha-hydroxylase|phytanoyl-CoA dioxygenase, peroxisomal 20121230 -9606 5265 SERPINA1 PRO0684 A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT HGNC:8941|MIM:107400|Ensembl:ENSG00000197249|HPRD:02463|Vega:OTTHUMG00000150355 14 14q32.1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 protein-coding SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 O alpha-1 protease inhibitor|alpha-1-antiproteinase|alpha-1-antitrypsin|alpha-1-antitrypsin null|protease inhibitor 1 (anti-elastase), alpha-1-antitrypsin|serine (or cysteine) proteinase inhibitor, clade A, member 1|serpin A1 20121230 -9606 5266 PI3 - ESI|SKALP|WAP3|WFDC14|cementoin HGNC:8947|MIM:182257|Ensembl:ENSG00000124102|HPRD:15947|Vega:OTTHUMG00000032567 20 20q13.12 peptidase inhibitor 3, skin-derived protein-coding PI3 peptidase inhibitor 3, skin-derived O PI-3|WAP four-disulfide core domain 14|WAP four-disulfide core domain protein 14|elafin|elastase-specific inhibitor|pre-elafin|protease inhibitor 3, skin-derived (SKALP)|protease inhibitor WAP3|skin-derived antileukoproteinase|trappin-2 20121230 -9606 5267 SERPINA4 - KAL|KLST|KST|PI-4|PI4|kallistatin HGNC:8948|MIM:147935|Ensembl:ENSG00000100665|HPRD:01004|Vega:OTTHUMG00000170859 14 14q32.13 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 protein-coding SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 O kallikrein inhibitor|kallistatin|peptidase inhibitor 4|protease inhibitor 4 (kallistatin)|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4|serpin A4 20121230 -9606 5268 SERPINB5 - PI5|maspin HGNC:8949|MIM:154790|Ensembl:ENSG00000206075|HPRD:01111|Vega:OTTHUMG00000141307 18 18q21.33 serpin peptidase inhibitor, clade B (ovalbumin), member 5 protein-coding SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5 O PI-5|peptidase inhibitor 5|protease inhibitor 5 (maspin)|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5|serpin B5 20121230 -9606 5269 SERPINB6 RP1-90J20.6 CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3 HGNC:8950|MIM:173321|Ensembl:ENSG00000124570|HPRD:01413|Vega:OTTHUMG00000016170 6 6p25 serpin peptidase inhibitor, clade B (ovalbumin), member 6 protein-coding SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 O cytoplasmic antiproteinase|protease inhibitor 6 (placental thrombin inhibitor)|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6|serpin B6 20121230 -9606 5270 SERPINE2 - GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI HGNC:8951|MIM:177010|Ensembl:ENSG00000135919|HPRD:01510|Vega:OTTHUMG00000133163 2 2q36.1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 protein-coding SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 O glia-derived nexin|glial-derived neurite promoting factor|peptidase inhibitor 7|protease nexin I|serpin E2 20121230 -9606 5271 SERPINB8 - CAP2|PI8 HGNC:8952|MIM:601697|Ensembl:ENSG00000166401|HPRD:03412|Vega:OTTHUMG00000060596 18 18q22.1 serpin peptidase inhibitor, clade B (ovalbumin), member 8 protein-coding SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 O PI-8|cytoplasmic antiproteinase 2|peptidase inhibitor 8|protease inhibitor 8 (ovalbumin type)|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8|serpin B8 20121230 -9606 5272 SERPINB9 - CAP-3|CAP3|PI-9|PI9 HGNC:8955|MIM:601799|Ensembl:ENSG00000170542|HPRD:03480|Vega:OTTHUMG00000014131 6 6p25 serpin peptidase inhibitor, clade B (ovalbumin), member 9 protein-coding SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 O cytoplasmic antiproteinase 3|peptidase inhibitor 9|protease inhibitor 9 (ovalbumin type)|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 9|serpin B9|serpin peptidase inhibitor, clade B, member 9 20121230 -9606 5273 SERPINB10 - PI-10|PI10 HGNC:8942|MIM:602058|Ensembl:ENSG00000242550|HPRD:03635|Vega:OTTHUMG00000060594 18 18q21.3 serpin peptidase inhibitor, clade B (ovalbumin), member 10 protein-coding SERPINB10 serpin peptidase inhibitor, clade B (ovalbumin), member 10 O bomapin|peptidase inhibitor 10|protease inhibitor 10 (ovalbumin type, bomapin)|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10|serpin B10 20121230 -9606 5274 SERPINI1 - PI12|neuroserpin HGNC:8943|MIM:602445|Ensembl:ENSG00000163536|HPRD:03901|Vega:OTTHUMG00000158450 3 3q26.1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 protein-coding SERPINI1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 O PI-12|neuroserpin|peptidase inhibitor 12|serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 1|serpin I1 20121230 -9606 5275 SERPINB13 - HSHUR7SEQ|HUR7|PI13|headpin HGNC:8944|MIM:604445|Ensembl:ENSG00000197641|HPRD:05118|Vega:OTTHUMG00000060406 18 18q21.33 serpin peptidase inhibitor, clade B (ovalbumin), member 13 protein-coding SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13 O HURPIN|PI-13|UV-B repressed sequence, HUR 7|haCaT UV-repressible serpin|peptidase inhibitor 13|protease inhibitor 13 (hurpin, headpin)|proteinase inhibitor 13|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13|serpin B13 20121230 -9606 5276 SERPINI2 - MEPI|PANCPIN|PI14|TSA2004 HGNC:8945|MIM:605587|Ensembl:ENSG00000114204|HPRD:05722|Vega:OTTHUMG00000158231 3 3q26.1 serpin peptidase inhibitor, clade I (pancpin), member 2 protein-coding SERPINI2 serpin peptidase inhibitor, clade I (pancpin), member 2 O PI-14|myoepithelium-derived serine protease inhibitor|pancreas-specific protein TSA2004|peptidase inhibitor 14|protease inhibitor 14|serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2|serine (or cysteine) proteinase inhibitor, clade I (pancpin), member 2|serpin I2 20121230 -9606 5277 PIGA - GPI3|MCAHS2|PIG-A HGNC:8957|MIM:311770|Ensembl:ENSG00000165195|HPRD:02410|Vega:OTTHUMG00000021174 X Xp22.1 phosphatidylinositol glycan anchor biosynthesis, class A protein-coding PIGA phosphatidylinositol glycan anchor biosynthesis, class A O GLCNAC-PI synthesis protein|GPI anchor biosynthesis|class A GlcNAc-inositol phospholipid assembly protein|phosphatidylinositol N-acetylglucosaminyltransferase subunit A|phosphatidylinositol-glycan biosynthesis, class A protein 20121230 -9606 5278 PIGAP1 - - HGNC:8958 12 12q21 phosphatidylinositol glycan anchor biosynthesis, class A, pseudogene 1 pseudo PIGAP1 phosphatidylinositol glycan anchor biosynthesis, class A, pseudogene 1 O - 20121230 -9606 5279 PIGC - GPI2 HGNC:8960|MIM:601730|Ensembl:ENSG00000135845|HPRD:03433|Vega:OTTHUMG00000034751 1 1q23-q25 phosphatidylinositol glycan anchor biosynthesis, class C protein-coding PIGC phosphatidylinositol glycan anchor biosynthesis, class C O PIG-C|phosphatidylinositol N-acetylglucosaminyltransferase subunit C|phosphatidylinositol-glycan biosynthesis class C protein|phosphatidylinositol-glycan biosynthesis, class C protein 20121230 -9606 5280 PIGCP1 - - HGNC:8961 11 11p13 phosphatidylinositol glycan anchor biosynthesis, class C, pseudogene 1 pseudo PIGCP1 phosphatidylinositol glycan anchor biosynthesis, class C, pseudogene 1 O - 20121230 -9606 5281 PIGF - - HGNC:8962|MIM:600153|Ensembl:ENSG00000151665|HPRD:02539|Vega:OTTHUMG00000128816 2 2p21-p16 phosphatidylinositol glycan anchor biosynthesis, class F protein-coding PIGF phosphatidylinositol glycan anchor biosynthesis, class F O GPI11 homolog|PIG-F|phosphatidylinositol-glycan biosynthesis class F protein 20121230 -9606 5282 PIGFP1 - - HGNC:8963 5 5q35 phosphatidylinositol glycan anchor biosynthesis, class F, pseudogene 1 pseudo PIGFP1 phosphatidylinositol glycan anchor biosynthesis, class F, pseudogene 1 O - 20121230 -9606 5283 PIGH - GPI-H HGNC:8964|MIM:600154|Ensembl:ENSG00000100564|HPRD:02540|Vega:OTTHUMG00000171806 14 14q24.1 phosphatidylinositol glycan anchor biosynthesis, class H protein-coding PIGH phosphatidylinositol glycan anchor biosynthesis, class H O PIG-H|phosphatidylinositol N-acetylglucosaminyltransferase subunit H|phosphatidylinositol glycan, class H|phosphatidylinositol-glycan biosynthesis class H protein|phosphatidylinositol-glycan biosynthesis, class H protein 20121230 -9606 5284 PIGR - - HGNC:8968|MIM:173880|Ensembl:ENSG00000162896|HPRD:01436|Vega:OTTHUMG00000036581 1 1q31-q41 polymeric immunoglobulin receptor protein-coding PIGR polymeric immunoglobulin receptor O hepatocellular carcinoma associated protein TB6|hepatocellular carcinoma-associated protein TB6|poly-Ig receptor 20121230 -9606 5285 PIH - - HGNC:8969 - - pregnancy-induced hypertension (pre-eclampsia, eclampsia, toxemia of pregnancy included) unknown PIH pregnancy-induced hypertension (pre-eclampsia, eclampsia, toxemia of pregnancy included) O - 20121206 -9606 5286 PIK3C2A - CPK|PI3-K-C2(ALPHA)|PI3-K-C2A HGNC:8971|MIM:603601|Ensembl:ENSG00000011405|HPRD:04672|Vega:OTTHUMG00000166036 11 11p15.5-p14 phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha protein-coding PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha O C2-containing phosphatidylinositol kinase|PI3K-C2-alpha|PI3K-C2alpha|phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha|phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit alpha|phosphoinositide 3-kinase-C2-alpha|phosphoinositide-3-kinase, class 2, alpha polypeptide|ptdIns-3-kinase C2 subunit alpha 20121230 -9606 5287 PIK3C2B RP11-739N20.5 C2-PI3K HGNC:8972|MIM:602838|Ensembl:ENSG00000133056|HPRD:04160|Vega:OTTHUMG00000036101 1 1q32 phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta protein-coding PIK3C2B phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta O PI3K-C2-beta|PI3K-C2beta|PTDINS-3-kinase C2 beta|phosphatidylinositol 3-kinase C2 domain-containing beta polypeptide|phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta|phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta|phosphoinositide 3-kinase-C2-beta|phosphoinositide-3-kinase, class 2, beta polypeptide|ptdIns-3-kinase C2 subunit beta 20121230 -9606 5288 PIK3C2G - PI3K-C2GAMMA HGNC:8973|MIM:609001|Ensembl:ENSG00000139144|HPRD:16416|Vega:OTTHUMG00000168841 12 12p12 phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma protein-coding PIK3C2G phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma O PI3K-C2-gamma|PTDINS-3-kinase C2 gamma|phosphatidylinositol 3-kinase C2 domain-containing gamma|phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit gamma|phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing gamma polypeptide|phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit gamma|phosphoinositide 3-kinase-C2-gamma|phosphoinositide-3-kinase, class 2, gamma polypeptide|ptdIns-3-kinase C2 subunit gamma 20121230 -9606 5289 PIK3C3 - VPS34|hVps34 HGNC:8974|MIM:602609|Ensembl:ENSG00000078142|HPRD:04009|Vega:OTTHUMG00000132593 18 18q12.3 phosphatidylinositol 3-kinase, catalytic subunit type 3 protein-coding PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3 O PI3-kinase type 3|PI3K type 3|PtdIns-3-kinase type 3|phosphatidylinositol 3-kinase catalytic subunit type 3|phosphatidylinositol 3-kinase p100 subunit|phosphoinositide-3-kinase, class 3 20121230 -9606 5290 PIK3CA - CLOVE|MCAP|MCM|MCMTC|PI3K|p110-alpha HGNC:8975|MIM:171834|Ensembl:ENSG00000121879|HPRD:01382|Vega:OTTHUMG00000157311 3 3q26.3 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha protein-coding PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha O PI3-kinase p110 subunit alpha|PI3K-alpha|phosphatidylinositol 3-kinase, catalytic, 110-KD, alpha|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide|phosphatidylinositol 4,5-bisphosphate 3-kinase 110 kDa catalytic subunit alpha|phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform|phosphatidylinositol-4,5-bisphosphate 3-kinase 110 kDa catalytic subunit alpha|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit, alpha isoform|phosphoinositide-3-kinase, catalytic, alpha polypeptide|ptdIns-3-kinase subunit p110-alpha|serine/threonine protein kinase PIK3CA 20121230 -9606 5291 PIK3CB - P110BETA|PI3K|PI3KBETA|PIK3C1 HGNC:8976|MIM:602925|Ensembl:ENSG00000051382|HPRD:04234|Vega:OTTHUMG00000159893 3 3q22.3 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta protein-coding PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta O PI3-kinase p110 subunit beta|PI3-kinase subunit beta|PI3K-beta|PtdIns-3-kinase p110|phosphatidylinositol 4,5-bisphosphate 3-kinase 110 kDa catalytic subunit beta|phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform|phosphatidylinositol-4,5-bisphosphate 3-kinase 110 kDa catalytic subunit beta|phosphoinositide-3-kinase, catalytic, beta polypeptide|ptdIns-3-kinase subunit beta|ptdIns-3-kinase subunit p110-beta 20121230 -9606 5292 PIM1 - PIM HGNC:8986|MIM:164960|Ensembl:ENSG00000137193|HPRD:01292|Vega:OTTHUMG00000016426 6 6p21.2 pim-1 oncogene protein-coding PIM1 pim-1 oncogene O Oncogene PIM1|pim-1 kinase 44 kDa isoform|pim-1 oncogene (proviral integration site 1)|proto-oncogene serine/threonine-protein kinase pim-1|serine/threonine-protein kinase pim-1 20121230 -9606 5293 PIK3CD RP11-558F24.3 P110DELTA|PI3K|p110D HGNC:8977|MIM:602839|Ensembl:ENSG00000171608|Vega:OTTHUMG00000001450 1 1p36.2 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta protein-coding PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta O PI3-kinase p110 subunit delta|PI3Kdelta|phosphatidylinositol 4,5-bisphosphate 3-kinase 110 kDa catalytic subunit delta|phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform|phosphatidylinositol-4,5-bisphosphate 3-kinase 110 kDa catalytic subunit delta|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform|phosphoinositide-3-kinase C|phosphoinositide-3-kinase, catalytic, delta polypeptide variant p37delta|ptdIns-3-kinase subunit p110-delta 20121230 -9606 5294 PIK3CG - PI3CG|PI3K|PI3Kgamma|PIK3 HGNC:8978|MIM:601232|Ensembl:ENSG00000105851|HPRD:03135|Vega:OTTHUMG00000157641 7 7q22.3 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma protein-coding PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma O 1-phosphatidylinositol 3-kinase|PI3-kinase subunit gamma|PI3K-gamma|p110-gamma|p110gamma|p120-PI3K|phosphatidylinositol 3 kinase gamma, p110 gamma|phosphatidylinositol 3-kinase catalytic 110-kD gamma|phosphatidylinositol 3-kinase, catalytic, gamma polypeptide|phosphatidylinositol 4,5-bisphosphate 3-kinase 110 kDa catalytic subunit gamma|phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform|phosphatidylinositol-4,5-bisphosphate 3-kinase 110 kDa catalytic subunit gamma|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform|phosphoinositide-3-kinase gamma catalytic subunit|phosphoinositide-3-kinase, catalytic, gamma polypeptide|ptdIns-3-kinase subunit gamma|ptdIns-3-kinase subunit p110-gamma|serine/threonine protein kinase PIK3CG 20121230 -9606 5295 PIK3R1 - GRB1|p85|p85-ALPHA HGNC:8979|MIM:171833|Ensembl:ENSG00000145675|HPRD:01381|Vega:OTTHUMG00000131251 5 5q13.1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) O PI3-kinase subunit p85-alpha|PI3K regulatory subunit alpha|phosphatidylinositol 3-kinase 85 kDa regulatory subunit alpha|phosphatidylinositol 3-kinase regulatory subunit alpha|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)|phosphatidylinositol 3-kinase-associated p-85 alpha|phosphoinositide-3-kinase regulatory subunit|ptdIns-3-kinase regulatory subunit alpha 20121230 -9606 5296 PIK3R2 - MPPH|P85B|p85|p85-BETA HGNC:8980|MIM:603157|Ensembl:ENSG00000105647|HPRD:04404|Vega:OTTHUMG00000150640 19 19q13.2-q13.4 phosphoinositide-3-kinase, regulatory subunit 2 (beta) protein-coding PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta) O PI3-kinase subunit p85-beta|PI3K regulatory subunit beta|phosphatidylinositol 3-kinase 85 kDa regulatory subunit beta|phosphatidylinositol 3-kinase regulatory subunit beta|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)|ptdIns-3-kinase regulatory subunit p85-beta 20121230 -9606 5297 PI4KA - PI4K-ALPHA|PIK4CA|pi4K230 HGNC:8983|MIM:600286|Ensembl:ENSG00000241973|HPRD:08972|Vega:OTTHUMG00000167440 22 22q11.21 phosphatidylinositol 4-kinase, catalytic, alpha protein-coding PI4KA phosphatidylinositol 4-kinase, catalytic, alpha O PI4-kinase alpha|phosphatidylinositol 4-kinase 230|phosphatidylinositol 4-kinase alpha|phosphatidylinositol 4-kinase, type III, alpha|ptdIns-4-kinase alpha 20121230 -9606 5298 PI4KB RP11-126K1.4 NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB HGNC:8984|MIM:602758|Ensembl:ENSG00000143393|HPRD:11805|Vega:OTTHUMG00000012348 1 1q21 phosphatidylinositol 4-kinase, catalytic, beta protein-coding PI4KB phosphatidylinositol 4-kinase, catalytic, beta O PtdIns 4-kinase beta|phosphatidylinositol 4-kinase beta|phosphatidylinositol 4-kinase, wortmannin-sensitive|type III phosphatidylinositol 4-kinase beta 20121230 -9606 5300 PIN1 - DOD|UBL5 HGNC:8988|MIM:601052|Ensembl:ENSG00000127445|HPRD:03031|Vega:OTTHUMG00000180388 19 19p13 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 protein-coding PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 O PPIase Pin1|peptidyl-prolyl cis-trans isomerase NIMA-interacting 1|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1|rotamase Pin1 20121230 -9606 5301 PIN1P1 - PIN1L HGNC:8989|MIM:602051|HPRD:03630 1 1p31 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 O - 20121230 -9606 5303 PIN4 AL135749.5 EPVH|PAR14|PAR17 HGNC:8992|MIM:300252|Ensembl:ENSG00000102309|HPRD:02219|Vega:OTTHUMG00000021811 X Xq13 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) protein-coding PIN4 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) O PPIase PIN4|eukaryotic parvulin homolog|hEPVH|hPar14|hPar17|parvulin-14|parvulin-17|peptidyl-prolyl cis-trans isomerase NIMA-interacting 4|peptidyl-prolyl cis-trans isomerase Pin4|peptidyl-prolyl cis/trans isomerase EPVH|rotamase PIN4 20121230 -9606 5304 PIP - GCDFP-15|GCDFP15|GPIP4 HGNC:8993|MIM:176720|Ensembl:ENSG00000159763|HPRD:07179|Vega:OTTHUMG00000152635 7 7q34 prolactin-induced protein protein-coding PIP prolactin-induced protein O SABP|gross cystic disease fluid protein 15|prolactin-inducible protein|secretory actin-binding protein 20121230 -9606 5305 PIP4K2A RP11-301N24.1 PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK HGNC:8997|MIM:603140|Ensembl:ENSG00000150867|HPRD:11931|Vega:OTTHUMG00000017810 10 10p12.2 phosphatidylinositol-5-phosphate 4-kinase, type II, alpha protein-coding PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha O 1-phosphatidylinositol 5-phosphate 4-kinase 2-alpha|1-phosphatidylinositol-4-phosphate kinase|1-phosphatidylinositol-4-phosphate-5-kinase|1-phosphatidylinositol-5-phosphate 4-kinase 2-alpha|PI(5)P 4-kinase type II alpha|PIP4KII-alpha|PIP5KIII|PIP5KIIalpha|PtdIns(4)P-5-kinase B isoform|diphosphoinositide kinase 2-alpha|phosphatidylinositol 5-phosphate 4-kinase type II alpha|phosphatidylinositol 5-phosphate 4-kinase type-2 alpha|phosphatidylinositol-4-phosphate 5-kinase, type II, alpha|phosphatidylinositol-5-phosphate 4-kinase type-2 alpha|ptdIns(4)P-5-kinase C isoform|ptdIns(5)P-4-kinase isoform 2-alpha|type II phosphatidylinositol-4-phosphate 5-kinase 53 K isoform 20121230 -9606 5306 PITPNA - PI-TPalpha|PITPN|VIB1A HGNC:9001|MIM:600174|Ensembl:ENSG00000174238|HPRD:02548|Vega:OTTHUMG00000177779 17 17p13.3 phosphatidylinositol transfer protein, alpha protein-coding PITPNA phosphatidylinositol transfer protein, alpha O PI-TP-alpha|phosphatidylinositol transfer protein alpha isoform|ptdIns transfer protein alpha|ptdInsTP alpha 20121230 -9606 5307 PITX1 - BFT|CCF|LBNBG|POTX|PTX1 HGNC:9004|MIM:602149|Ensembl:ENSG00000069011|HPRD:03688|Vega:OTTHUMG00000149983 5 5q31.1 paired-like homeodomain 1 protein-coding PITX1 paired-like homeodomain 1 O hindlimb expressed homeobox protein backfoot|hindlimb-expressed homeobox protein backfoot|homeobox protein PITX1|paired-like homeodomain transcription factor 1|pituitary homeo box 1|pituitary homeobox 1|pituitary otx-related factor 20121230 -9606 5308 PITX2 - ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS HGNC:9005|MIM:601542|Ensembl:ENSG00000164093|HPRD:03328|Vega:OTTHUMG00000132837 4 4q25 paired-like homeodomain 2 protein-coding PITX2 paired-like homeodomain 2 O ALL1-responsive protein ARP1|all1-responsive gene 1|homeobox protein PITX2|paired-like homeodomain transcription factor 2|pituitary homeobox 2|rieg bicoid-related homeobox transcription factor 1|solurshin 20121230 -9606 5309 PITX3 - CTPP4|PTX3 HGNC:9006|MIM:602669|Ensembl:ENSG00000107859|HPRD:04051|Vega:OTTHUMG00000018952 10 10q24.32 paired-like homeodomain 3 protein-coding PITX3 paired-like homeodomain 3 O homeobox protein PITX3|pituitary homeobox 3 20121230 -9606 5310 PKD1 - PBP|Pc-1|TRPP1 HGNC:9008|MIM:601313|Ensembl:ENSG00000008710|HPRD:03203|Vega:OTTHUMG00000155795 16 16p13.3 polycystic kidney disease 1 (autosomal dominant) protein-coding PKD1 polycystic kidney disease 1 (autosomal dominant) O autosomal dominant polycystic kidney disease 1 protein|polycystic kidney disease-associated protein|polycystin 1|polycystin-1|transient receptor potential cation channel, subfamily P, member 1 20121230 -9606 5311 PKD2 - APKD2|PC2|PKD4|Pc-2|TRPP2 HGNC:9009|MIM:173910|Ensembl:ENSG00000118762|HPRD:01437|Vega:OTTHUMG00000160982 4 4q22.1 polycystic kidney disease 2 (autosomal dominant) protein-coding PKD2 polycystic kidney disease 2 (autosomal dominant) O R48321|autosomal dominant polycystic kidney disease type II protein|polycystin-2|polycystwin|transient receptor potential cation channel, subfamily P, member 2 20121230 -9606 5312 PKD3 - - HGNC:9013|MIM:600666 2 2p polycystic kidney disease 3 (autosomal dominant) unknown PKD3 polycystic kidney disease 3 (autosomal dominant) O - 20110215 -9606 5313 PKLR - PK1|PKL|PKR|PKRL|RPK HGNC:9020|MIM:609712|Ensembl:ENSG00000143627|HPRD:11841|Vega:OTTHUMG00000035875 1 1q21 pyruvate kinase, liver and RBC protein-coding PKLR pyruvate kinase, liver and RBC O R-type/L-type pyruvate kinase|pyruvate kinase 1|pyruvate kinase isozyme R/L|pyruvate kinase isozymes R/L|pyruvate kinase type L|pyruvate kinase, liver and blood cell|red cell/liver pyruvate kinase 20121230 -9606 5314 PKHD1 - ARPKD|FCYT|TIGM1 HGNC:9016|MIM:606702|Ensembl:ENSG00000170927|HPRD:05987|Vega:OTTHUMG00000014841 6 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) O TIG multiple domains 1|fibrocystin|polycystic kidney and hepatic disease 1 protein|polyductin|tigmin 20121230 -9606 5315 PKM - CTHBP|OIP3|PK3|PKM2|TCB|THBP1 HGNC:9021|MIM:179050|Ensembl:ENSG00000067225|HPRD:01529|Vega:OTTHUMG00000172709 15 15q22 pyruvate kinase, muscle protein-coding PKM pyruvate kinase, muscle O OIP-3|OPA-interacting protein 3|PK, muscle type|cytosolic thyroid hormone-binding protein|p58|pyruvate kinase 2/3|pyruvate kinase isozymes M1/M2|pyruvate kinase muscle isozyme|thyroid hormone-binding protein 1|thyroid hormone-binding protein, cytosolic|tumor M2-PK 20121230 -9606 5316 PKNOX1 - PREP1|pkonx1c HGNC:9022|MIM:602100|Ensembl:ENSG00000160199|HPRD:03653|Vega:OTTHUMG00000086833 21 21q22.3 PBX/knotted 1 homeobox 1 protein-coding PKNOX1 PBX/knotted 1 homeobox 1 O PBX/knotted homeobox 1|Pbx regulating protein-1|homeobox protein PKNOX1|homeobox protein PREP-1|human homeobox-containing protein 20121230 -9606 5317 PKP1 - B6P HGNC:9023|MIM:601975|Ensembl:ENSG00000081277|HPRD:03579|Vega:OTTHUMG00000035729 1 1q32 plakophilin 1 (ectodermal dysplasia/skin fragility syndrome) protein-coding PKP1 plakophilin 1 (ectodermal dysplasia/skin fragility syndrome) O band 6 protein|plakophilin-1 20121230 -9606 5318 PKP2 - ARVD9 HGNC:9024|MIM:602861|Ensembl:ENSG00000057294|HPRD:04177|Vega:OTTHUMG00000169500 12 12p11 plakophilin 2 protein-coding PKP2 plakophilin 2 O plakophilin-2 20121230 -9606 5319 PLA2G1B - PLA2|PLA2A|PPLA2 HGNC:9030|MIM:172410|Ensembl:ENSG00000170890|HPRD:01396|Vega:OTTHUMG00000169343 12 12q23-q24.1 phospholipase A2, group IB (pancreas) protein-coding PLA2G1B phospholipase A2, group IB (pancreas) O group IB phospholipase A2|phosphatidylcholine 2-acylhydrolase 1B|phospholipase A2 20121230 -9606 5320 PLA2G2A - MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 HGNC:9031|MIM:172411|Ensembl:ENSG00000188257|HPRD:01397|Vega:OTTHUMG00000002699 1 1p35 phospholipase A2, group IIA (platelets, synovial fluid) protein-coding PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) O GIIC sPLA2|NPS-PLA2|group IIA phospholipase A2|non-pancreatic secretory phospholipase A2|phosphatidylcholine 2-acylhydrolase 2A|phospholipase A2, membrane associated 20121230 -9606 5321 PLA2G4A - PLA2G4|cPLA2-alpha HGNC:9035|MIM:600522|Ensembl:ENSG00000116711|HPRD:08986|Vega:OTTHUMG00000035512 1 1q25 phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent) O cPLA2|calcium-dependent phospholipid-binding protein|cytosolic phospholipase A2|lysophospholipase|phosphatidylcholine 2-acylhydrolase|phospholipase A2 group IVA 20121230 -9606 5322 PLA2G5 - FRFB|GV-PLA2|PLA2-10|hVPLA(2) HGNC:9038|MIM:601192|Ensembl:ENSG00000127472|HPRD:03117|Vega:OTTHUMG00000002698 1 1p36-p34 phospholipase A2, group V protein-coding PLA2G5 phospholipase A2, group V O Ca2+-dependent phospholipase A2|calcium-dependent phospholipase A2|phosphatidylcholine 2-acylhydrolase 5 20121230 -9606 5324 PLAG1 - PSA|SGPA|ZNF912 HGNC:9045|MIM:603026|Ensembl:ENSG00000181690|HPRD:04321|Vega:OTTHUMG00000164310 8 8q12 pleiomorphic adenoma gene 1 protein-coding PLAG1 pleiomorphic adenoma gene 1 O COL1A2/PLAG1 fusion|zinc finger protein PLAG1 20121230 -9606 5325 PLAGL1 RP3-468K18.1 LOT1|ZAC|ZAC1 HGNC:9046|MIM:603044|Ensembl:ENSG00000118495|HPRD:16010|Vega:OTTHUMG00000015738 6 6q24-q25 pleiomorphic adenoma gene-like 1 protein-coding PLAGL1 pleiomorphic adenoma gene-like 1 O LOT-1|PLAG-like 1|ZAC tumor supressor|lost on transformation 1|pleiomorphic adenoma gene-like protein 1|pleiomorphic adenoma-like protein 1|tumor supressor ZAC|zinc finger protein PLAGL1 20121230 -9606 5326 PLAGL2 - ZNF900 HGNC:9047|MIM:604866|Ensembl:ENSG00000126003|HPRD:05333|Vega:OTTHUMG00000032210 20 20q11.21 pleiomorphic adenoma gene-like 2 protein-coding PLAGL2 pleiomorphic adenoma gene-like 2 O C2H2-type zinc finger protein|pleiomorphic adenoma-like protein 2|zinc finger protein PLAGL2 20121230 -9606 5327 PLAT - T-PA|TPA HGNC:9051|MIM:173370|Ensembl:ENSG00000104368|HPRD:01419|Vega:OTTHUMG00000164072 8 8p12 plasminogen activator, tissue protein-coding PLAT plasminogen activator, tissue O alteplase|plasminogen activator, tissue type|reteplase|t-plasminogen activator|tissue plasminogen activator (t-PA)|tissue-type plasminogen activator 20121230 -9606 5328 PLAU RP11-417O11.1 ATF|BDPLT5|QPD|UPA|URK|u-PA HGNC:9052|MIM:191840|Ensembl:ENSG00000122861|HPRD:01883|Vega:OTTHUMG00000018494 10 10q24 plasminogen activator, urokinase protein-coding PLAU plasminogen activator, urokinase O U-plasminogen activator|plasminogen activator, urinary|urokinase-type plasminogen activator 20121230 -9606 5329 PLAUR - CD87|U-PAR|UPAR|URKR HGNC:9053|MIM:173391|Ensembl:ENSG00000011422|HPRD:01421 19 19q13 plasminogen activator, urokinase receptor protein-coding PLAUR plasminogen activator, urokinase receptor O monocyte activation antigen Mo3|u-plasminogen activator receptor form 2|urokinase plasminogen activator surface receptor|urokinase-type plasminogen activator (uPA) receptor 20121230 -9606 5330 PLCB2 - - HGNC:9055|MIM:604114|Ensembl:ENSG00000137841|HPRD:04985|Vega:OTTHUMG00000172412 15 15q15 phospholipase C, beta 2 protein-coding PLCB2 phospholipase C, beta 2 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2|PLC-beta-2|phosphoinositide phospholipase C-beta-2|phospholipase C-beta-2 20121230 -9606 5331 PLCB3 - - HGNC:9056|MIM:600230|Ensembl:ENSG00000149782|HPRD:02577|Vega:OTTHUMG00000167816 11 11q13 phospholipase C, beta 3 (phosphatidylinositol-specific) protein-coding PLCB3 phospholipase C, beta 3 (phosphatidylinositol-specific) O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3|PLC beta 3|PLC-beta-3|phosphoinositide phospholipase C-beta-3 20121230 -9606 5332 PLCB4 RP4-811H13.1 ARCND2|PI-PLC HGNC:9059|MIM:600810|Ensembl:ENSG00000101333|HPRD:02885|Vega:OTTHUMG00000031853 20 20p12 phospholipase C, beta 4 protein-coding PLCB4 phospholipase C, beta 4 O 1-phosphatidyl-D-myo-inositol-4,5-bisphosphate|1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4|PLC-beta-4|dJ1119D9.2 (Phopholipase C, beta 4 (1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase Beta 4))|inositoltrisphosphohydrolase|monophosphatidylinositol phosphodiesterase|phosphoinositidase C|phosphoinositide phospholipase C-beta-4|triphosphoinositide phosphodiesterase 20121230 -9606 5333 PLCD1 - NDNC3|PLC-III HGNC:9060|MIM:602142|Ensembl:ENSG00000187091|HPRD:09073|Vega:OTTHUMG00000130813 3 3p22-p21.3 phospholipase C, delta 1 protein-coding PLCD1 phospholipase C, delta 1 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-1|PLC-delta-1|phosphoinositide phospholipase C-delta-1|phospholipase C-III 20121230 -9606 5334 PLCL1 - PLCE|PLCL|PLDL1|PRIP HGNC:9063|MIM:600597|Ensembl:ENSG00000115896|HPRD:07041|Vega:OTTHUMG00000132750 2 2q33 phospholipase C-like 1 protein-coding PLCL1 phospholipase C-like 1 O PLC-L1|inactive phospholipase C-like protein 1|phospholipase C related, but catalytically inactive protein|phospholipase C, epsilon|phospholipase C-deleted in lung carcinoma|phospholipase C-related but catalytically inactive protein 20121230 -9606 5335 PLCG1 RP3-511B24.2 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 HGNC:9065|MIM:172420|Ensembl:ENSG00000124181|HPRD:01398|Vega:OTTHUMG00000033082 20 20q12-q13.1 phospholipase C, gamma 1 protein-coding PLCG1 phospholipase C, gamma 1 O 1-phosphatidyl-D-myo-inositol-4,5-bisphosphate|1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1|PLC-148|PLC-gamma-1|inositoltrisphosphohydrolase|monophosphatidylinositol phosphodiesterase|phosphatidylinositol phospholipase C|phosphoinositidase C|phosphoinositide phospholipase C|phosphoinositide phospholipase C-gamma-1|phospholipase C, gamma 1 (formerly subtype 148)|phospholipase C-148|phospholipase C-II|phospholipase C-gamma-1|triphosphoinositide phosphodiesterase 20121230 -9606 5336 PLCG2 - APLAID|FCAS3 HGNC:9066|MIM:600220|Ensembl:ENSG00000197943|HPRD:02570|Vega:OTTHUMG00000176532 16 16q24.1 phospholipase C, gamma 2 (phosphatidylinositol-specific) protein-coding PLCG2 phospholipase C, gamma 2 (phosphatidylinositol-specific) O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2|PLC-IV|PLC-gamma-2|phosphoinositide phospholipase C-gamma-2|phospholipase C-IV 20121230 -9606 5337 PLD1 - - HGNC:9067|MIM:602382|Ensembl:ENSG00000075651|HPRD:03855|Vega:OTTHUMG00000156947 3 3q26 phospholipase D1, phosphatidylcholine-specific protein-coding PLD1 phospholipase D1, phosphatidylcholine-specific O choline phosphatase 1|phosphatidylcholine-hydrolyzing phospholipase D1|phospholipase D1 20121230 -9606 5338 PLD2 - - HGNC:9068|MIM:602384|Ensembl:ENSG00000129219|HPRD:03857|Vega:OTTHUMG00000090779 17 17p13.1 phospholipase D2 protein-coding PLD2 phospholipase D2 O PLD1C|choline phosphatase 2|hPLD2|phosphatidylcholine-hydrolyzing phospholipase D2 20121230 -9606 5339 PLEC - EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN HGNC:9069|MIM:601282|Ensembl:ENSG00000178209|HPRD:03180|Vega:OTTHUMG00000165291 8 8q24 plectin protein-coding PLEC plectin O hemidesmosomal protein 1|plectin 1, intermediate filament binding protein 500kDa|plectin-1 20121230 -9606 5340 PLG RP1-81D8.1 - HGNC:9071|MIM:173350|Ensembl:ENSG00000122194|HPRD:01417|Vega:OTTHUMG00000015957 6 6q26 plasminogen protein-coding PLG plasminogen O plasmin 20121230 -9606 5341 PLEK - P47 HGNC:9070|MIM:173570|Ensembl:ENSG00000115956|HPRD:15935|Vega:OTTHUMG00000129562 2 2p13.3 pleckstrin protein-coding PLEK pleckstrin O platelet 47 kDa protein 20121230 -9606 5342 PLGLB2 - PLGP1 HGNC:9073|Ensembl:ENSG00000125551|HPRD:01416|Vega:OTTHUMG00000153273 2 2p11.2 plasminogen-like B2 protein-coding PLGLB2 plasminogen-like B2 O plasminogen pseudogene 1|plasminogen-like protein B|plasminogen-related protein B|type B plasminogen related 20121230 -9606 5343 PLGLB1 - PLGL|PLGP1|PRGB|PRP-B HGNC:9072|MIM:173340|Ensembl:ENSG00000183281|Vega:OTTHUMG00000154612 2 2p11.2 plasminogen-like B1 protein-coding PLGLB1 plasminogen-like B1 O plasminogen-like protein B|plasminogen-related protein B|type B plasminogen related 20121209 -9606 5345 SERPINF2 - A2AP|AAP|ALPHA-2-PI|API|PLI HGNC:9075|MIM:613168|Ensembl:ENSG00000167711|HPRD:02029|Vega:OTTHUMG00000090552 17 17p13 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 protein-coding SERPINF2 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 O alpha-2-AP|alpha-2-antiplasmin|alpha-2-plasmin inhibitor|serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2|serpin F2 20121230 -9606 5346 PLIN1 - FPLD4|PERI|PLIN HGNC:9076|MIM:170290|Ensembl:ENSG00000166819|HPRD:01364|Vega:OTTHUMG00000149813 15 15q26 perilipin 1 protein-coding PLIN1 perilipin 1 O lipid droplet-associated protein|perilipin-1 20121230 -9606 5347 PLK1 - PLK|STPK13 HGNC:9077|MIM:602098|Ensembl:ENSG00000166851|HPRD:03652|Vega:OTTHUMG00000096984 16 16p12.2 polo-like kinase 1 protein-coding PLK1 polo-like kinase 1 O PLK-1|cell cycle regulated protein kinase|polo (Drosophia)-like kinase|polo like kinase|serine/threonine-protein kinase 13|serine/threonine-protein kinase PLK1 20121230 -9606 5348 FXYD1 - PLM HGNC:4025|MIM:602359|Ensembl:ENSG00000266964|HPRD:03837|Vega:OTTHUMG00000182359 19 19q13.1 FXYD domain containing ion transport regulator 1 protein-coding FXYD1 FXYD domain containing ion transport regulator 1 O phospholemman 20121230 -9606 5349 FXYD3 - MAT8|PLML HGNC:4027|MIM:604996|Ensembl:ENSG00000089356|HPRD:05410 19 19q13.12 FXYD domain containing ion transport regulator 3 protein-coding FXYD3 FXYD domain containing ion transport regulator 3 O FXYD domain-containing ion transport regulator 3|chloride conductance inducer protein Mat-8|mammary tumor 8 kDa protein|phospholemman-like protein 20121230 -9606 5350 PLN RP3-509L4.2 CMD1P|CMH18|PLB HGNC:9080|MIM:172405|Ensembl:ENSG00000198523|HPRD:01395|Vega:OTTHUMG00000015462 6 6q22.1 phospholamban protein-coding PLN phospholamban O cardiac phospholamban 20121230 -9606 5351 PLOD1 RP5-1077B9.2 LH|LH1|LLH|PLOD HGNC:9081|MIM:153454|Ensembl:ENSG00000083444|HPRD:01086|Vega:OTTHUMG00000002393 1 1p36.22 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 protein-coding PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 O lysine hydroxylase|lysyl hydroxlase 1|procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1|procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 20121230 -9606 5352 PLOD2 - LH2|TLH HGNC:9082|MIM:601865|Ensembl:ENSG00000152952|HPRD:03519|Vega:OTTHUMG00000159417 3 3q24 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 O lysine hydroxylase 2|lysyl hydroxlase 2|lysyl hydroxylase 2|procollagen-lysine,2-oxoglutarate 5-dioxygenase 2|telopeptide lysyl hydroxylase 20121230 -9606 5354 PLP1 GHc-698D2.1 HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2 HGNC:9086|MIM:300401|Ensembl:ENSG00000123560|HPRD:02321|Vega:OTTHUMG00000022111 X Xq22 proteolipid protein 1 protein-coding PLP1 proteolipid protein 1 O lipophilin|major myelin proteolipid protein|myelin proteolipid protein 20121230 -9606 5355 PLP2 - A4|A4LSB HGNC:9087|MIM:300112|Ensembl:ENSG00000102007|HPRD:02121|Vega:OTTHUMG00000021513 X Xp11.23 proteolipid protein 2 (colonic epithelium-enriched) protein-coding PLP2 proteolipid protein 2 (colonic epithelium-enriched) O A4 differentiation-dependent protein|differentiation-dependent protein A4|intestinal membrane A4 protein|proteolipid protein 2 20121230 -9606 5356 PLRG1 - Cwc1|PRL1|PRP46|PRPF46|TANGO4 HGNC:9089|MIM:605961|Ensembl:ENSG00000171566|HPRD:16181|Vega:OTTHUMG00000161411 4 4q31.2-q32.1 pleiotropic regulator 1 protein-coding PLRG1 pleiotropic regulator 1 O pleiotropic regulator 1 (PRL1 homolog, Arabidopsis)|transport and golgi organization 4 homolog 20121230 -9606 5357 PLS1 - - HGNC:9090|MIM:602734|Ensembl:ENSG00000120756|HPRD:04110|Vega:OTTHUMG00000159292 3 3q23 plastin 1 protein-coding PLS1 plastin 1 O I plastin|fimbrin|intestine specific plastin|intestine-specific plastin|plastin-1 20121230 -9606 5358 PLS3 - T-plastin HGNC:9091|MIM:300131|Ensembl:ENSG00000102024|HPRD:02133|Vega:OTTHUMG00000022237 X Xq23 plastin 3 protein-coding PLS3 plastin 3 O T fimbrin|T plastin|plastin-3 20121230 -9606 5359 PLSCR1 - MMTRA1B HGNC:9092|MIM:604170|Ensembl:ENSG00000188313|HPRD:08855|Vega:OTTHUMG00000159427 3 3q23 phospholipid scramblase 1 protein-coding PLSCR1 phospholipid scramblase 1 O PL scramblase 1|ca(2+)-dependent phospholipid scramblase 1|erythrocyte phospholipid scramblase 20121230 -9606 5360 PLTP - BPIFE|HDLCQ9 HGNC:9093|MIM:172425|Ensembl:ENSG00000100979|HPRD:01399|Vega:OTTHUMG00000033047 20 20q13.12 phospholipid transfer protein protein-coding PLTP phospholipid transfer protein O BPI fold containing family E|lipid transfer protein II 20121230 -9606 5361 PLXNA1 - NOV|NOVP|PLEXIN-A1|PLXN1 HGNC:9099|MIM:601055|Ensembl:ENSG00000114554|HPRD:11868|Vega:OTTHUMG00000044222 3 3q21.3 plexin A1 protein-coding PLXNA1 plexin A1 O plexin 1|plexin-A1|semaphorin receptor NOV 20121230 -9606 5362 PLXNA2 RP11-328D5.3 OCT|PLXN2 HGNC:9100|MIM:601054|Ensembl:ENSG00000076356|HPRD:03033|Vega:OTTHUMG00000036564 1 1q32.2 plexin A2 protein-coding PLXNA2 plexin A2 O plexin 2|plexin-A2|semaphorin receptor OCT|transmembrane protein OCT 20121230 -9606 5364 PLXNB1 - PLEXIN-B1|PLXN5|SEP HGNC:9103|MIM:601053|Ensembl:ENSG00000164050|HPRD:03032|Vega:OTTHUMG00000133527 3 3p21.31 plexin B1 protein-coding PLXNB1 plexin B1 O plexin 5|plexin-B1|semaphorin receptor SEP 20121230 -9606 5365 PLXNB3 - PLEXB3|PLEXR|PLXN6 HGNC:9105|MIM:300214|Ensembl:ENSG00000198753|HPRD:02198|Vega:OTTHUMG00000024217 X Xq28 plexin B3 protein-coding PLXNB3 plexin B3 O plexin 6|plexin-B3 20121230 -9606 5366 PMAIP1 - APR|NOXA HGNC:9108|MIM:604959|Ensembl:ENSG00000141682|HPRD:12002|Vega:OTTHUMG00000132765 18 18q21.32 phorbol-12-myristate-13-acetate-induced protein 1 protein-coding PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 O PMA-induced protein 1|adult T cell leukemia-derived PMA-responsive|immediate-early-response protein APR|protein Noxa 20121230 -9606 5367 PMCH - MCH HGNC:9109|MIM:176795|Ensembl:ENSG00000183395|HPRD:01459|Vega:OTTHUMG00000170479 12 12q23.2 pro-melanin-concentrating hormone protein-coding PMCH pro-melanin-concentrating hormone O pro-MCH 20121230 -9606 5368 PNOC - PPNOC HGNC:9163|MIM:601459|Ensembl:ENSG00000168081|HPRD:03268|Vega:OTTHUMG00000102125 8 8p21 prepronociceptin protein-coding PNOC prepronociceptin O nociceptin|nocistatin|propronociceptin 20121230 -9606 5369 PMCHL1 - - HGNC:9110|MIM:176793|HPRD:15940 5 5p14.3 pro-melanin-concentrating hormone-like 1, pseudogene pseudo PMCHL1 pro-melanin-concentrating hormone-like 1, pseudogene O - 20121230 -9606 5370 PMCHL2 - - HGNC:9111|MIM:176794|HPRD:15941 5 5q13 pro-melanin-concentrating hormone-like 2, pseudogene pseudo PMCHL2 pro-melanin-concentrating hormone-like 2, pseudogene O - 20121230 -9606 5371 PML - MYL|PP8675|RNF71|TRIM19 HGNC:9113|MIM:102578|Ensembl:ENSG00000140464|HPRD:00023|Vega:OTTHUMG00000137607 15 15q22 promyelocytic leukemia protein-coding PML promyelocytic leukemia O RING finger protein 71|probable transcription factor PML|promyelocytic leukemia protein|promyelocytic leukemia, inducer of|protein PML|tripartite motif protein TRIM19|tripartite motif-containing protein 19 20121230 -9606 5372 PMM1 - Sec53 HGNC:9114|MIM:601786|Ensembl:ENSG00000100417|HPRD:03473|Vega:OTTHUMG00000150972 22 22q13.2 phosphomannomutase 1 protein-coding PMM1 phosphomannomutase 1 O PMM 1|PMMH-22|brain glucose-1,6-bisphosphatase 20121230 -9606 5373 PMM2 - CDG1|CDG1a|CDGS|PMI|PMI1|PMM 2 HGNC:9115|MIM:601785|Ensembl:ENSG00000140650|HPRD:03472|Vega:OTTHUMG00000129697 16 16p13 phosphomannomutase 2 protein-coding PMM2 phosphomannomutase 2 O phosphomannose isomerase 1 20121230 -9606 5375 PMP2 - FABP8|M-FABP|MP2|P2 HGNC:9117|MIM:170715|Ensembl:ENSG00000147588|HPRD:01366|Vega:OTTHUMG00000164600 8 8q21.3-q22.1 peripheral myelin protein 2 protein-coding PMP2 peripheral myelin protein 2 O myelin P2 protein 20121230 -9606 5376 PMP22 - CMT1A|CMT1E|DSS|GAS-3|HMSNIA|HNPP|Sp110 HGNC:9118|MIM:601097|Ensembl:ENSG00000109099|HPRD:03059|Vega:OTTHUMG00000058960 17 17p12 peripheral myelin protein 22 protein-coding PMP22 peripheral myelin protein 22 O PMP-22|growth arrest-specific 3|growth arrest-specific protein 3 20121230 -9606 5378 PMS1 - HNPCC3|PMSL1|hPMS1 HGNC:9121|MIM:600258|Ensembl:ENSG00000064933|HPRD:02597|Vega:OTTHUMG00000132664 2 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) protein-coding PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) O DNA mismatch repair protein PMS1|PMS1 protein homolog 1|human homolog of yeast mutL|mismatch repair gene PMSL1|rhabdomyosarcoma antigen MU-RMS-40.10B|rhabdomyosarcoma antigen MU-RMS-40.10E 20121230 -9606 5379 PMS2P1 tcag7.1111 PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2 HGNC:9123|MIM:605038 7 7q22.1 postmeiotic segregation increased 2 pseudogene 1 pseudo PMS2P1 postmeiotic segregation increased 2 pseudogene 1 O - 20121230 -9606 5380 PMS2L2 - PMS4 HGNC:9127|HPRD:17865 7 7q11.23 postmeiotic segregation increased 2-like 2 pseudogene pseudo PMS2L2 postmeiotic segregation increased 2-like 2 pseudogene O - 20121230 -9606 5382 PMS2P4 - PMS2L4|PMS6 HGNC:9129 7 7q11.22 postmeiotic segregation increased 2 pseudogene 4 pseudo PMS2P4 postmeiotic segregation increased 2 pseudogene 4 O - 20121230 -9606 5383 PMS2P5 - PMS2L5|PMS7 HGNC:9130|HPRD:17867 7 7q11.23 postmeiotic segregation increased 2 pseudogene 5 pseudo PMS2P5 postmeiotic segregation increased 2 pseudogene 5 O - 20121230 -9606 5387 PMS2P3 - PMS2L3|PMS2L9|PMS5|PMSR3 HGNC:9128|HPRD:17866 7 7q11.23 postmeiotic segregation increased 2 pseudogene 3 pseudo PMS2P3 postmeiotic segregation increased 2 pseudogene 3 O - 20121230 -9606 5391 PMS2P9 - PMS2L17|PMS2LP1|PMSR5 HGNC:9135 7 7q11 postmeiotic segregation increased 2 pseudogene 9 pseudo PMS2P9 postmeiotic segregation increased 2 pseudogene 9 O - 20121021 -9606 5393 EXOSC9 - PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6 HGNC:9137|MIM:606180|Ensembl:ENSG00000123737|HPRD:07315|Vega:OTTHUMG00000128783 4 4q27 exosome component 9 protein-coding EXOSC9 exosome component 9 O P75 polymyositis-scleroderma overlap syndrome associated autoantigen|P75 polymyositis-scleroderma overlap syndrome-associated autoantigen|PMSCL autoantigen, 75kD|autoantigen PM/Scl 1|exosome complex component RRP45|exosome complex exonuclease RRP45|polymyositis/scleroderma autoantigen 1, 75kDa 20121230 -9606 5394 EXOSC10 - PM-Scl|PM/Scl-100|PMSCL|PMSCL2|RRP6|Rrp6p|p2|p3|p4 HGNC:9138|MIM:605960|Ensembl:ENSG00000171824|HPRD:16180|Vega:OTTHUMG00000002123 1 1p36.22 exosome component 10 protein-coding EXOSC10 exosome component 10 O P100 polymyositis-scleroderma overlap syndrome-associated autoantigen|autoantigen PM-SCL|autoantigen PM/Scl 2|polymyositis/scleroderma autoantigen 100 kDa|polymyositis/scleroderma autoantigen 2 (100kD)|polymyositis/scleroderma autoantigen 2, 100kDa 20121230 -9606 5395 PMS2 - HNPCC4|PMS2CL|PMSL2 HGNC:9122|MIM:600259|Ensembl:ENSG00000122512|HPRD:02598|Vega:OTTHUMG00000023135 7 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) protein-coding PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) O DNA mismatch repair protein PMS2|H_DJ0042M02.9|PMS1 protein homolog 2|mismatch repair endonuclease PMS2 20121230 -9606 5396 PRRX1 - AGOTC|PHOX1|PMX1|PRX-1|PRX1 HGNC:9142|MIM:167420|Ensembl:ENSG00000116132|HPRD:01337|Vega:OTTHUMG00000035231 1 1q24 paired related homeobox 1 protein-coding PRRX1 paired related homeobox 1 O homeobox protein PHOX1|paired mesoderm homeo box 1|paired mesoderm homeobox 1 isoform pmx-1b|paired mesoderm homeobox protein 1|paired-related homeobox protein 1 20121230 -9606 5406 PNLIP RP11-33D13.1 PL|PNLIPD|PTL HGNC:9155|MIM:246600|Ensembl:ENSG00000175535|HPRD:02005|Vega:OTTHUMG00000019103 10 10q26.1 pancreatic lipase protein-coding PNLIP pancreatic lipase O pancreatic triacylglycerol lipase|triacylglycerol acylhydrolase 20121230 -9606 5407 PNLIPRP1 - PLRP1 HGNC:9156|MIM:604422|Ensembl:ENSG00000187021|HPRD:05109|Vega:OTTHUMG00000019109 10 10q25.3 pancreatic lipase-related protein 1 protein-coding PNLIPRP1 pancreatic lipase-related protein 1 O PL-RP1 20121230 -9606 5408 PNLIPRP2 - PLRP2 HGNC:9157|MIM:604423|Ensembl:ENSG00000165862|HPRD:05110|Vega:OTTHUMG00000019110 10 10q25.3 pancreatic lipase-related protein 2 protein-coding PNLIPRP2 pancreatic lipase-related protein 2 O PL-RP2|galactolipase 20121230 -9606 5409 PNMT - PENT|PNMTase HGNC:9160|MIM:171190|Ensembl:ENSG00000141744|HPRD:07176|Vega:OTTHUMG00000133209 17 17q phenylethanolamine N-methyltransferase protein-coding PNMT phenylethanolamine N-methyltransferase O noradrenaline N-methyltransferase|phenylethanolamine N-methylase 20121230 -9606 5411 PNN - DRS|DRSP|SDK3|memA HGNC:9162|MIM:603154|Ensembl:ENSG00000100941|HPRD:04401|Vega:OTTHUMG00000028821 14 14q21.1 pinin, desmosome associated protein protein-coding PNN pinin, desmosome associated protein O 140 kDa nuclear and cell adhesion-related phosphoprotein|SR-like protein|desmosome-associated protein|domain-rich serine protein|melanoma metastasis clone A protein|neutrophil protein|nuclear protein SDK3|pinin 20121230 -9606 5412 UBL3 - HCG-1|PNSC1 HGNC:12504|MIM:604711|Ensembl:ENSG00000122042|HPRD:05275|Vega:OTTHUMG00000016661 13 13q12-q13 ubiquitin-like 3 protein-coding UBL3 ubiquitin-like 3 O MUB|hsMUB|membrane-anchored ubiquitin-fold protein|protein HCG-1|ubiquitin-like protein 3 20121230 -9606 5413 SEPT5 - CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1 HGNC:9164|MIM:602724|Ensembl:ENSG00000184702|HPRD:04100|Vega:OTTHUMG00000150399 22 22q11.21 septin 5 protein-coding SEPT5 septin 5 O cell division control related protein 1|peanut-like 1|platelet glycoprotein Ib beta chain|septin-5 20121230 -9606 5414 SEPT4 hucep-7 ARTS|BRADEION|CE5B3|H5|MART|PNUTL2|SEP4|hCDCREL-2 HGNC:9165|MIM:603696|Ensembl:ENSG00000108387|HPRD:04738|Vega:OTTHUMG00000179243 17 17q22 septin 4 protein-coding SEPT4 septin 4 O CE5B3 beta|apoptosis-related protein in the TGF-beta signaling pathway|bradeion beta|brain protein H5|cell division control-related protein 2|cerebral protein 7|peanut-like protein 2|septin-4|septin-M 20121230 -9606 5420 PODXL - Gp200|PC|PCLP|PCLP-1 HGNC:9171|MIM:602632|Ensembl:ENSG00000128567|HPRD:04025|Vega:OTTHUMG00000154918 7 7q32-q33 podocalyxin-like protein-coding PODXL podocalyxin-like O GCTM-2 antigen|podocalyxin|podocalyxin-like protein 1 20121230 -9606 5422 POLA1 - POLA|p180 HGNC:9173|MIM:312040|Ensembl:ENSG00000101868|HPRD:02416|Vega:OTTHUMG00000021277 X Xp22.1-p21.3 polymerase (DNA directed), alpha 1, catalytic subunit protein-coding POLA1 polymerase (DNA directed), alpha 1, catalytic subunit O DNA polymerase alpha 1 catalytic subunit|DNA polymerase alpha catalytic subunit|DNA polymerase alpha catalytic subunit p180|DNA polymerase alpha p180 subunit|polymerase (DNA-directed), alpha (70kD) 20121230 -9606 5423 POLB - - HGNC:9174|MIM:174760|Ensembl:ENSG00000070501|HPRD:07517|Vega:OTTHUMG00000164093 8 8p11.2 polymerase (DNA directed), beta protein-coding POLB polymerase (DNA directed), beta O DNA pol beta|DNA polymerase beta|DNA polymerase beta subunit|mutant DNA polymerase beta 20121230 -9606 5424 POLD1 - CDC2|POLD HGNC:9175|MIM:174761|Ensembl:ENSG00000062822|HPRD:08882 19 19q13.3 polymerase (DNA directed), delta 1, catalytic subunit protein-coding POLD1 polymerase (DNA directed), delta 1, catalytic subunit O CDC2 homolog|DNA polymerase delta catalytic subunit|DNA polymerase subunit delta p125|polymerase (DNA directed), delta 1, catalytic subunit 125kDa 20121230 -9606 5425 POLD2 - - HGNC:9176|MIM:600815|Ensembl:ENSG00000106628|HPRD:15982|Vega:OTTHUMG00000022909 7 7p13 polymerase (DNA directed), delta 2, accessory subunit protein-coding POLD2 polymerase (DNA directed), delta 2, accessory subunit O DNA polymerase delta subunit 2|DNA polymerase delta subunit p50|Pol delta B subunit (p50)|polymerase (DNA directed), delta 2, regulatory subunit 50kDa 20121230 -9606 5426 POLE - POLE1 HGNC:9177|MIM:174762|Ensembl:ENSG00000177084|HPRD:07177|Vega:OTTHUMG00000168045 12 12q24.3 polymerase (DNA directed), epsilon, catalytic subunit protein-coding POLE polymerase (DNA directed), epsilon, catalytic subunit O DNA polymerase II subunit A|DNA polymerase epsilon catalytic subunit A 20121230 -9606 5427 POLE2 - DPE2 HGNC:9178|MIM:602670|Ensembl:ENSG00000100479|HPRD:16007|Vega:OTTHUMG00000170813 14 14q21-q22 polymerase (DNA directed), epsilon 2, accessory subunit protein-coding POLE2 polymerase (DNA directed), epsilon 2, accessory subunit O DNA polymerase II subunit 2|DNA polymerase epsilon subunit 2|DNA polymerase epsilon subunit B|polymerase (DNA directed), epsilon 2 (p59 subunit) 20121230 -9606 5428 POLG - MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE HGNC:9179|MIM:174763|Ensembl:ENSG00000140521|HPRD:01438|Vega:OTTHUMG00000149646 15 15q25 polymerase (DNA directed), gamma protein-coding POLG polymerase (DNA directed), gamma O DNA polymerase subunit gamma-1|PolG, catalytic subunit|PolG-alpha|mitochondrial DNA polymerase catalytic subunit 20121230 -9606 5429 POLH RP11-22I24.1 RAD30|RAD30A|XP-V|XPV HGNC:9181|MIM:603968|Ensembl:ENSG00000170734|HPRD:04913|Vega:OTTHUMG00000014743 6 6p21.1 polymerase (DNA directed), eta protein-coding POLH polymerase (DNA directed), eta O DNA polymerase eta|RAD30 homolog A|xeroderma pigmentosum variant type protein 20121230 -9606 5430 POLR2A - POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1 HGNC:9187|MIM:180660|Ensembl:ENSG00000181222|HPRD:08916|Vega:OTTHUMG00000177594 17 17p13.1 polymerase (RNA) II (DNA directed) polypeptide A, 220kDa protein-coding POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa O DNA-directed RNA polymerase II largest subunit, RNA polymerase II 220 kd subunit|DNA-directed RNA polymerase II subunit A|DNA-directed RNA polymerase II subunit RPB1|DNA-directed RNA polymerase III largest subunit|RNA polymerase II subunit B1|RNA-directed RNA polymerase II subunit RPB1 20121230 -9606 5431 POLR2B - POL2RB|RPB2|hRPB140|hsRPB2 HGNC:9188|MIM:180661|Ensembl:ENSG00000047315|HPRD:15943|Vega:OTTHUMG00000128771 4 4q12 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa protein-coding POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa O DNA directed RNA polymerase II 140 kDa polypeptide, RNA polymerase II subunit 2, RNA polymerase II second largest subunit|DNA-directed RNA polymerase II 140 kDa polypeptide|DNA-directed RNA polymerase II subunit B|DNA-directed RNA polymerase II subunit RPB2|RNA polymerase II subunit 2|RNA polymerase II subunit B2 20121230 -9606 5432 POLR2C A-152E5.7 RPB3|RPB31|hRPB33|hsRPB3 HGNC:9189|MIM:180663|Ensembl:ENSG00000102978|HPRD:15945|Vega:OTTHUMG00000133464 16 16q13-q21 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa protein-coding POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa O DNA-directed RNA polymerase II 33 kDa polypeptide|DNA-directed RNA polymerase II subunit C|DNA-directed RNA polymerase II subunit RPB3|RNA polymerase II subunit 3|RNA polymerase II subunit B3|RPB33 20121230 -9606 5433 POLR2D - HSRBP4|HSRPB4|RBP4|RPB16 HGNC:9191|MIM:606017|Ensembl:ENSG00000144231|HPRD:16191|Vega:OTTHUMG00000131531 2 2q21 polymerase (RNA) II (DNA directed) polypeptide D protein-coding POLR2D polymerase (RNA) II (DNA directed) polypeptide D O DNA-directed RNA polymerase II 16 kDa polypeptide|DNA-directed RNA polymerase II subunit D|DNA-directed RNA polymerase II subunit RPB4|RNA polymerase II 16 kDa subunit|RNA polymerase II subunit B4|RNA polymerase II subunit hsRBP4 20121230 -9606 5434 POLR2E - RPABC1|RPB5|XAP4|hRPB25|hsRPB5 HGNC:9192|MIM:180664|Ensembl:ENSG00000099817|HPRD:15946|Vega:OTTHUMG00000181873 19 19p13.3 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa protein-coding POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa O DNA directed RNA polymerase II 23 kda polypeptide|DNA-directed RNA polymerase II 23 kDa polypeptide|DNA-directed RNA polymerase II subunit E|DNA-directed RNA polymerases I, II, and III subunit RPABC1|RNA polymerases I, II, and III subunit ABC1|RPB5 homolog 20121230 -9606 5435 POLR2F - HRBP14.4|POLRF|RPABC2|RPB14.4|RPB6 HGNC:9193|MIM:604414|Ensembl:ENSG00000100142|HPRD:05105|Vega:OTTHUMG00000151160 22 22q13.1 polymerase (RNA) II (DNA directed) polypeptide F protein-coding POLR2F polymerase (RNA) II (DNA directed) polypeptide F O DNA directed RNA polymerase II 14.4 kda polypeptide|DNA-directed RNA polymerase II subunit F|DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide|DNA-directed RNA polymerases I, II, and III subunit RPABC2|RNA Polymerase II subunit 14.4 kD|RNA polymerases I, II, and III subunit ABC2|RPABC14.4|RPB6 homolog|RPC15 20121230 -9606 5436 POLR2G - RPB19|RPB7|hRPB19|hsRPB7 HGNC:9194|MIM:602013|Ensembl:ENSG00000168002|HPRD:15995|Vega:OTTHUMG00000167609 11 11q13.1 polymerase (RNA) II (DNA directed) polypeptide G protein-coding POLR2G polymerase (RNA) II (DNA directed) polypeptide G O DNA directed RNA polymerase II 19 kda polypeptide|DNA-directed RNA polymerase II 19 kDa polypeptide|DNA-directed RNA polymerase II subunit G|DNA-directed RNA polymerase II subunit RPB7|RNA polymerase II 19 kDa subunit|RNA polymerase II seventh subunit|RNA polymerase II subunit B7 20121230 -9606 5437 POLR2H - RPABC3|RPB17|RPB8|hsRPB8 HGNC:9195|MIM:606023|Ensembl:ENSG00000163882|HPRD:09082|Vega:OTTHUMG00000156746 3 3q28 polymerase (RNA) II (DNA directed) polypeptide H protein-coding POLR2H polymerase (RNA) II (DNA directed) polypeptide H O DNA-directed RNA polymerase II subunit H|DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide|DNA-directed RNA polymerases I, II, and III subunit RPABC3|RNA polymerases I, II, and III subunit ABC3|RPB8 homolog|hRPB8 20121230 -9606 5438 POLR2I - RPB9|hRPB14.5 HGNC:9196|MIM:180662|Ensembl:ENSG00000105258|HPRD:15944|Vega:OTTHUMG00000181749 19 19q12 polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa protein-coding POLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa O DNA-directed RNA polymerase II 14.5 kDa polypeptide|DNA-directed RNA polymerase II subunit I|DNA-directed RNA polymerase II subunit RPB9|RNA polymerase II 14.5 kDa subunit|RNA polymerase II subunit B9|RPB14.5 20121230 -9606 5439 POLR2J - POLR2J1|RPB11|RPB11A|RPB11m|hRPB14 HGNC:9197|MIM:604150|Ensembl:ENSG00000005075|HPRD:16038|Vega:OTTHUMG00000150387 7 7q22.1 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa protein-coding POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa O DNA-directed RNA polymerase II subunit J-1|DNA-directed RNA polymerase II subunit RPB11-a|RNA polymerase II 13.3 kDa subunit|RNA polymerase II subunit B11-a 20121230 -9606 5440 POLR2K - ABC10-alpha|RPABC4|RPB10alpha|RPB12|RPB7.0|hRPB7.0|hsRPB10a HGNC:9198|MIM:606033|Ensembl:ENSG00000147669|HPRD:05826|Vega:OTTHUMG00000164705 8 8q22.2 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa protein-coding POLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa O DNA directed RNA polymerases I, II, and III 7.0 kda polypeptide|DNA-directed RNA polymerase II subunit K|DNA-directed RNA polymerases I, II, and III subunit RPABC4|RNA polymerase II 7.0 kDa subunit|RNA polymerases I, II, and III subunit ABC4 20121230 -9606 5441 POLR2L - RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6 HGNC:9199|MIM:601189|Ensembl:ENSG00000177700|HPRD:01155|Vega:OTTHUMG00000133316 11 11p15 polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa protein-coding POLR2L polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa O DNA-directed RNA polymerase III subunit L|DNA-directed RNA polymerases I, II, and III subunit RPABC5|RNA polymerase II 7.6 kDa subunit|RNA polymerases I, II, and III subunit ABC5|RPB10 homolog 20121230 -9606 5442 POLRMT - APOLMT|MTRNAP|MTRPOL|h-mtRPOL HGNC:9200|MIM:601778|Ensembl:ENSG00000099821|HPRD:03468|Vega:OTTHUMG00000180611 19 19p13.3 polymerase (RNA) mitochondrial (DNA directed) protein-coding POLRMT polymerase (RNA) mitochondrial (DNA directed) O DNA-directed RNA polymerase, mitochondrial 20121230 -9606 5443 POMC - ACTH|CLIP|LPH|MSH|NPP|POC HGNC:9201|MIM:176830|Ensembl:ENSG00000115138|HPRD:01462|Vega:OTTHUMG00000094764 2 2p23.3 proopiomelanocortin protein-coding POMC proopiomelanocortin O adrenocorticotropic hormone|adrenocorticotropin|alpha-MSH|alpha-melanocyte-stimulating hormone|beta-LPH|beta-MSH|beta-endorphin|beta-melanocyte-stimulating hormone|corticotropin-like intermediary peptide|corticotropin-lipotropin|gamma-LPH|gamma-MSH|lipotropin beta|lipotropin gamma|melanotropin alpha|melanotropin beta|melanotropin gamma|met-enkephalin|opiomelanocortin prepropeptide|pro-ACTH-endorphin|pro-opiomelanocortin|proopiomelanocortin preproprotein 20121230 -9606 5444 PON1 - ESA|MVCD5|PON HGNC:9204|MIM:168820|Ensembl:ENSG00000005421|HPRD:01351|Vega:OTTHUMG00000153894 7 7q21.3 paraoxonase 1 protein-coding PON1 paraoxonase 1 O A-esterase 1|K-45|PON 1|aromatic esterase 1|arylesterase B-type|esterase A|paraoxonase B-type|serum aryldiakylphosphatase|serum aryldialkylphosphatase 1|serum paraoxonase/arylesterase 1 20121230 -9606 5445 PON2 - - HGNC:9205|MIM:602447|Ensembl:ENSG00000105854|HPRD:03903|Vega:OTTHUMG00000153948 7 7q21.3 paraoxonase 2 protein-coding PON2 paraoxonase 2 O A-esterase 2|PON 2|aromatic esterase 2|paraoxonase nirs|serum aryldialkylphosphatase 2|serum paraoxonase/arylesterase 2 20121230 -9606 5446 PON3 - - HGNC:9206|MIM:602720|Ensembl:ENSG00000105852|HPRD:04098|Vega:OTTHUMG00000153917 7 7q21.3 paraoxonase 3 protein-coding PON3 paraoxonase 3 O paraoxanase-3|serum paraoxonase/lactonase 3 20121230 -9606 5447 POR - CPR|CYPOR|P450R HGNC:9208|MIM:124015|Ensembl:ENSG00000127948|HPRD:00485|Vega:OTTHUMG00000130413 7 7q11.2 P450 (cytochrome) oxidoreductase protein-coding POR P450 (cytochrome) oxidoreductase O NADPH--cytochrome P450 reductase|NADPH-dependent cytochrome P450 reductase 20121230 -9606 5449 POU1F1 - CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 HGNC:9210|MIM:173110|Ensembl:ENSG00000064835|HPRD:01409|Vega:OTTHUMG00000158992 3 3p11 POU class 1 homeobox 1 protein-coding POU1F1 POU class 1 homeobox 1 O POU domain, class 1, transcription factor 1|growth hormone factor 1|pituitary-specific positive transcription factor 1|pituitary-specific transcription factor 1 20121230 -9606 5450 POU2AF1 - BOB1|OBF-1|OBF1|OCAB HGNC:9211|MIM:601206|Ensembl:ENSG00000110777|HPRD:03126|Vega:OTTHUMG00000166659 11 11q23.1 POU class 2 associating factor 1 protein-coding POU2AF1 POU class 2 associating factor 1 O B-cell-specific coactivator OBF-1|BOB-1|OCA-B|OCT-binding factor 1|POU domain class 2-associating factor 1|POU domain, class 2, associating factor 1 20121230 -9606 5451 POU2F1 - OCT1|OTF1|oct-1B HGNC:9212|MIM:164175|Ensembl:ENSG00000143190|HPRD:01250|Vega:OTTHUMG00000034436 1 1q24.2 POU class 2 homeobox 1 protein-coding POU2F1 POU class 2 homeobox 1 O NF-A1|OTF-1|Octamer-binding transcription factor-1|POU domain, class 2, transcription factor 1|oct-1|octamer-binding protein 1|octamer-binding transcription factor 1 20121230 -9606 5452 POU2F2 - OCT2|OTF2|Oct-2 HGNC:9213|MIM:164176|Ensembl:ENSG00000028277|HPRD:01251|Vega:OTTHUMG00000165991 19 19q13.2 POU class 2 homeobox 2 protein-coding POU2F2 POU class 2 homeobox 2 O OTF-2|POU domain, class 2, transcription factor 2|homeobox protein|lymphoid-restricted immunoglobulin octamer-binding protein NF-A2|octamer-binding protein 2|octamer-binding transcription factor 2 20121230 -9606 5453 POU3F1 - OCT6|OTF6|SCIP HGNC:9214|MIM:602479|Ensembl:ENSG00000185668|HPRD:03921|Vega:OTTHUMG00000000485 1 1p34.1 POU class 3 homeobox 1 protein-coding POU3F1 POU class 3 homeobox 1 O OTF-6|POU domain transcription factor SCIP|POU domain, class 3, transcription factor 1|octamer-binding protein 6|octamer-binding transcription factor 6 20121230 -9606 5454 POU3F2 - BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 HGNC:9215|MIM:600494|Ensembl:ENSG00000184486|HPRD:02734|Vega:OTTHUMG00000015258 6 6q16 POU class 3 homeobox 2 protein-coding POU3F2 POU class 3 homeobox 2 O POU domain, class 3, transcription factor 2|brain-2|brain-specific homeobox/POU domain protein 2|nervous system-specific octamer-binding transcription factor N-Oct-3|octamer-binding protein 7|octamer-binding transcription factor 7 20121230 -9606 5455 POU3F3 - BRN1|OTF8 HGNC:9216|MIM:602480|Ensembl:ENSG00000198914|HPRD:03922|Vega:OTTHUMG00000153067 2 2q12.1 POU class 3 homeobox 3 protein-coding POU3F3 POU class 3 homeobox 3 O OTF-8|POU domain, class 3, transcription factor 3|brain-1|brain-specific homeobox/POU domain protein 1|brn-1|oct-8|octamer-binding protein 8|octamer-binding transcription factor 8 20121230 -9606 5456 POU3F4 - BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 HGNC:9217|MIM:300039|Ensembl:ENSG00000196767|HPRD:02076|Vega:OTTHUMG00000021919 X Xq21.1 POU class 3 homeobox 4 protein-coding POU3F4 POU class 3 homeobox 4 O POU domain, class 3, transcription factor 4|brain-specific homeobox/POU domain protein 4|octamer-binding transcription factor 9 20121230 -9606 5457 POU4F1 - BRN3A|Oct-T1|RDC-1|brn-3A HGNC:9218|MIM:601632|Ensembl:ENSG00000152192|HPRD:03379|Vega:OTTHUMG00000017119 13 13q31.1 POU class 4 homeobox 1 protein-coding POU4F1 POU class 4 homeobox 1 O POU domain, class 4, transcription factor 1|brain-3A|brain-specific homeobox/POU domain protein 3A|homeobox/POU domain protein RDC-1 20121230 -9606 5458 POU4F2 - BRN3.2|BRN3B|Brn-3b HGNC:9219|MIM:113725|Ensembl:ENSG00000151615|HPRD:00220|Vega:OTTHUMG00000162045 4 4q31.2 POU class 4 homeobox 2 protein-coding POU4F2 POU class 4 homeobox 2 O Brn3b POU domain transcription factor|POU domain class 4 transcription factor 2|POU domain protein|POU domain, class 4, transcription factor 2|brain-3B|brain-specific homeobox/POU domain protein 3B 20121230 -9606 5459 POU4F3 - BRN3C|DFNA15 HGNC:9220|MIM:602460|Ensembl:ENSG00000091010|HPRD:03911|Vega:OTTHUMG00000129684 5 5q32 POU class 4 homeobox 3 protein-coding POU4F3 POU class 4 homeobox 3 O POU domain, class 4, transcription factor 3|brain-3C|brain-specific homeobox/POU domain protein 3C|brn-3C 20121230 -9606 5460 POU5F1 DADB-104B20.2 OCT3|OCT4|OTF-3|OTF3|OTF4|Oct-3|Oct-4 HGNC:9221|MIM:164177|Ensembl:ENSG00000204531|HPRD:01252|Vega:OTTHUMG00000031206 6 6p21.31 POU class 5 homeobox 1 protein-coding POU5F1 POU class 5 homeobox 1 O POU domain transcription factor OCT4|POU domain, class 5, transcription factor 1|POU-type homeodomain-containing DNA-binding protein|octamer-binding protein 3|octamer-binding protein 4|octamer-binding transcription factor 3|octamer-binding transcription factor-3 20121230 -9606 5462 POU5F1B - OCT4-PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 HGNC:9223|Ensembl:ENSG00000212993 8 8q24.21 POU class 5 homeobox 1B protein-coding POU5F1B POU class 5 homeobox 1B O POU 5 domain protein|POU class 5 homeobox 1 pseudogene 1|POU domain transcription factor OCT4-pg1|POU domain transcription factor Oct-4|POU domain, class 5, transcription factor 1 pseudogene 1|octamer binding protein 3_like sequence|putative POU domain, class 5, transcription factor 1B 20121230 -9606 5463 POU6F1 - BRN5|MPOU|TCFB1 HGNC:9224|Ensembl:ENSG00000184271|HPRD:17883|Vega:OTTHUMG00000169622 12 12q13.13 POU class 6 homeobox 1 protein-coding POU6F1 POU class 6 homeobox 1 O POU domain, class 6, transcription factor 1|brain-5|brain-specific homeobox/POU domain protein 5|brn-5|mPOU homeobox protein 20121230 -9606 5464 PPA1 RP11-367H5.1 IOPPP|PP|PP1|SID6-8061 HGNC:9226|MIM:179030|Ensembl:ENSG00000180817|HPRD:01527|Vega:OTTHUMG00000018399 10 10q11.1-q24 pyrophosphatase (inorganic) 1 protein-coding PPA1 pyrophosphatase (inorganic) 1 O PPase|cytosolic inorganic pyrophosphatase|diphosphate phosphohydrolase|inorganic diphosphatase|inorganic pyrophosphatase|inorganic pyrophosphatase 1|pyrophosphatase 1|pyrophosphate phospho-hydrolase 20121230 -9606 5465 PPARA SC22CB-5E3.5 NR1C1|PPAR|PPARalpha|hPPAR HGNC:9232|MIM:170998|Ensembl:ENSG00000186951|HPRD:01369|Vega:OTTHUMG00000150443 22 22q13.31 peroxisome proliferator-activated receptor alpha protein-coding PPARA peroxisome proliferator-activated receptor alpha O PPAR-alpha|nuclear receptor subfamily 1 group C member 1|peroxisome proliferative activated receptor, alpha|peroxisome proliferator-activated nuclear receptor alpha variant 3 20121230 -9606 5467 PPARD - FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB HGNC:9235|MIM:600409|Ensembl:ENSG00000112033|HPRD:02679|Vega:OTTHUMG00000014567 6 6p21.2 peroxisome proliferator-activated receptor delta protein-coding PPARD peroxisome proliferator-activated receptor delta O PPAR-beta|PPAR-delta|nuclear hormone receptor 1|nuclear receptor subfamily 1 group C member 2|peroxisome proliferator-activated nuclear receptor beta/delta variant 2|peroxisome proliferator-activated receptor beta 20121230 -9606 5468 PPARG - CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma HGNC:9236|MIM:601487|Ensembl:ENSG00000132170|HPRD:03288|Vega:OTTHUMG00000129764 3 3p25 peroxisome proliferator-activated receptor gamma protein-coding PPARG peroxisome proliferator-activated receptor gamma O PPAR gamma|PPAR-gamma|nuclear receptor subfamily 1 group C member 3|peroxisome proliferator-activated nuclear receptor gamma variant 1|peroxisome proliferator-activated receptor gamma 1 20121230 -9606 5469 MED1 - CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2 HGNC:9234|MIM:604311|Ensembl:ENSG00000125686|HPRD:05055|Vega:OTTHUMG00000133216 17 17q12 mediator complex subunit 1 protein-coding MED1 mediator complex subunit 1 O ARC205|PPAR binding protein|PPAR-binding protein|PPARG binding protein|TR-interacting protein 2|TRIP-2|activator-recruited cofactor 205 kDa component|mediator of RNA polymerase II transcription subunit 1|p53 regulatory protein RB18A|peroxisome proliferator-activated receptor-binding protein|thyroid hormone receptor-associated protein complex 220 kDa component|thyroid hormone receptor-associated protein complex component TRAP220|thyroid receptor interacting protein 2|thyroid receptor-interacting protein 2|vitamin D receptor-interacting protein 230 kD|vitamin D receptor-interacting protein complex component DRIP205 20121230 -9606 5470 PPEF2 - PPP7CB HGNC:9244|MIM:602256|Ensembl:ENSG00000156194|HPRD:03771|Vega:OTTHUMG00000160915 4 4q21.1 protein phosphatase, EF-hand calcium binding domain 2 protein-coding PPEF2 protein phosphatase, EF-hand calcium binding domain 2 O protein phosphatase 7, catalytic subunit, beta isozyme|protein phosphatase with EF hands 2|protein phosphatase, EF hand calcium-binding domain 2|serine/threonine-protein phosphatase with EF-hands 2 20121230 -9606 5471 PPAT - ATASE|GPAT|PRAT HGNC:9238|MIM:172450|Ensembl:ENSG00000128059|HPRD:01402|Vega:OTTHUMG00000128842 4 4q12 phosphoribosyl pyrophosphate amidotransferase protein-coding PPAT phosphoribosyl pyrophosphate amidotransferase O amidophosphoribosyltransferase|glutamine PRPP amidotransferase|glutamine phosphoribosylpyrophosphatate amidotransferase|glutamine phosphoribosylpyrophosphate amidotransferase 20121230 -9606 5473 PPBP - B-TG1|Beta-TG|CTAP-III|CTAP3|CTAPIII|CXCL7|LA-PF4|LDGF|MDGF|NAP-2|PBP|SCAR10|SCYB7|TC1|TC2|TGB|TGB1|THBGB|THBGB1 HGNC:9240|MIM:121010|Ensembl:ENSG00000163736|HPRD:07171|Vega:OTTHUMG00000130008 4 4q12-q13 pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) protein-coding PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) O C-X-C motif chemokine 7|CXC chemokine ligand 7|beta-thromboglobulin|connective tissue-activating peptide III|leukocyte-derived growth factor|low-affinity platelet factor IV|macrophage-derived growth factor|neutrophil-activating peptide 2|neutrophil-activating peptide-2|platelet basic protein|small inducible cytokine B7|small inducible cytokine subfamily B, member 7|small-inducible cytokine B7|thrombocidin 1|thrombocidin 2|thromboglobulin, beta-1 20121230 -9606 5475 PPEF1 RP3-499B10.1 PP7|PPEF|PPP7C|PPP7CA HGNC:9243|MIM:300109|Ensembl:ENSG00000086717|HPRD:02118|Vega:OTTHUMG00000021219 X Xp22 protein phosphatase, EF-hand calcium binding domain 1 protein-coding PPEF1 protein phosphatase, EF-hand calcium binding domain 1 O protein phosphatase 7, catalytic subunit, alpha isozyme|protein phosphatase with EF calcium-binding domain|protein phosphatase, serine/threonine type, with EF-hands|serine/threonine protein phosphatase 7|serine/threonine-protein phosphatase 7|serine/threonine-protein phosphatase with EF-hands 1 20121230 -9606 5476 CTSA RP3-337O18.1 GLB2|GSL|NGBE|PPCA|PPGB HGNC:9251|MIM:613111|Ensembl:ENSG00000064601|HPRD:02020|Vega:OTTHUMG00000033078 20 20q13.1 cathepsin A protein-coding CTSA cathepsin A O beta-galactosidase 2|beta-galactosidase protective protein|carboxypeptidase C|carboxypeptidase L|carboxypeptidase Y-like kininase|carboxypeptidase-L|deamidase|lysosomal carboxypeptidase A|lysosomal protective protein|protective protein cathepsin A|urinary kininase 20121230 -9606 5478 PPIA - CYPA|CYPH HGNC:9253|MIM:123840|Ensembl:ENSG00000196262|HPRD:00457|HPRD:17376|Vega:OTTHUMG00000023687 7 7p13 peptidylprolyl isomerase A (cyclophilin A) protein-coding PPIA peptidylprolyl isomerase A (cyclophilin A) O PPIase A|T cell cyclophilin|cyclophilin|cyclosporin A-binding protein|peptidyl-prolyl cis-trans isomerase A|rotamase A 20121230 -9606 5479 PPIB - CYP-S1|CYPB|OI9|SCYLP HGNC:9255|MIM:123841|Ensembl:ENSG00000166794|HPRD:00458|Vega:OTTHUMG00000133018 15 15q21-q22 peptidylprolyl isomerase B (cyclophilin B) protein-coding PPIB peptidylprolyl isomerase B (cyclophilin B) O PPIase B|S-cyclophilin|cyclophilin-like protein|peptidyl-prolyl cis-trans isomerase B|rotamase B 20121230 -9606 5480 PPIC - CYPC HGNC:9256|MIM:123842|Ensembl:ENSG00000168938|HPRD:00459|Vega:OTTHUMG00000128921 5 5q23.2 peptidylprolyl isomerase C (cyclophilin C) protein-coding PPIC peptidylprolyl isomerase C (cyclophilin C) O PPIase C|cyclophilin C|parvulin|peptidyl-prolyl cis-trans isomerase C|rotamase C 20121230 -9606 5481 PPID - CYP-40|CYPD HGNC:9257|MIM:601753|Ensembl:ENSG00000171497|HPRD:11875|Vega:OTTHUMG00000161927 4 4q31.3 peptidylprolyl isomerase D protein-coding PPID peptidylprolyl isomerase D O 40 kDa peptidyl-prolyl cis-trans isomerase D|PPIase D|cyclophilin 40|cyclophilin D|cyclophilin-40|cyclophilin-related protein|peptidyl-prolyl cis-trans isomerase D|rotamase D 20121230 -9606 5483 PPIAP11 - PPIP1 HGNC:9263 5 5q14.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 11 pseudo PPIAP11 peptidylprolyl isomerase A (cyclophilin A) pseudogene 11 O - 20121230 -9606 5485 PPIAP13 - PPIP3 HGNC:9266 10 10q22.2 peptidylprolyl isomerase A (cyclophilin A) pseudogene 13 pseudo PPIAP13 peptidylprolyl isomerase A (cyclophilin A) pseudogene 13 O - 20121230 -9606 5486 PPIAP14 - PPIP4 HGNC:9267 18 18p11.31 peptidylprolyl isomerase A (cyclophilin A) pseudogene 14 pseudo PPIAP14 peptidylprolyl isomerase A (cyclophilin A) pseudogene 14 O - 20121230 -9606 5487 PPIAP15 - PPIP5 HGNC:9268 3 3q13.13 peptidylprolyl isomerase A (cyclophilin A) pseudogene 15 pseudo PPIAP15 peptidylprolyl isomerase A (cyclophilin A) pseudogene 15 O - 20121230 -9606 5488 PPIAP16 - PPIP6 HGNC:9269 3 3p14.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene 16 pseudo PPIAP16 peptidylprolyl isomerase A (cyclophilin A) pseudogene 16 O - 20121230 -9606 5489 PPIAP7 - PPIP7 HGNC:9270 1 1p21.2 peptidylprolyl isomerase A (cyclophilin A) pseudogene 7 pseudo PPIAP7 peptidylprolyl isomerase A (cyclophilin A) pseudogene 7 O - 20121230 -9606 5491 PPIAP9 - PPIP9 HGNC:9272 6 6p21.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 9 pseudo PPIAP9 peptidylprolyl isomerase A (cyclophilin A) pseudogene 9 O - 20121230 -9606 5493 PPL - - HGNC:9273|MIM:602871|Ensembl:ENSG00000118898|HPRD:04187|Vega:OTTHUMG00000129528 16 16p13.3 periplakin protein-coding PPL periplakin O 190 kDa paraneoplastic pemphigus antigen|195 kDa cornified envelope precursor protein 20121230 -9606 5494 PPM1A - PP2C-ALPHA|PP2CA|PP2Calpha HGNC:9275|MIM:606108|Ensembl:ENSG00000100614|HPRD:16199|Vega:OTTHUMG00000140333 14 14q23.1 protein phosphatase, Mg2+/Mn2+ dependent, 1A protein-coding PPM1A protein phosphatase, Mg2+/Mn2+ dependent, 1A O protein phosphatase 1A|protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform 20121230 -9606 5495 PPM1B - PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX HGNC:9276|MIM:603770|Ensembl:ENSG00000138032|HPRD:04796|Vega:OTTHUMG00000128757 2 2p21 protein phosphatase, Mg2+/Mn2+ dependent, 1B protein-coding PPM1B protein phosphatase, Mg2+/Mn2+ dependent, 1B O PP2C-beta|protein phosphatase 1B|protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform|protein phosphatase 2C isoform beta|protein phosphatase 2C-like protein 20121230 -9606 5496 PPM1G - PP2CG|PP2CGAMMA|PPP2CG HGNC:9278|MIM:605119|Ensembl:ENSG00000115241|HPRD:09237|Vega:OTTHUMG00000097788 2 2p23.3 protein phosphatase, Mg2+/Mn2+ dependent, 1G protein-coding PPM1G protein phosphatase, Mg2+/Mn2+ dependent, 1G O PP2C, gamma|PP2C-gamma|protein phosphatase 1C|protein phosphatase 1G|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform|protein phosphatase 2, catalytic subunit, gamma isoform|protein phosphatase 2C gamma isoform|protein phosphatase 2C isoform gamma|protein phosphatase magnesium-dependent 1 gamma 20121230 -9606 5498 PPOX - PPO|V290M|VP HGNC:9280|MIM:600923|Ensembl:ENSG00000143224|HPRD:02953|Vega:OTTHUMG00000034342 1 1q22 protoporphyrinogen oxidase protein-coding PPOX protoporphyrinogen oxidase O - 20121230 -9606 5499 PPP1CA - PP-1A|PP1alpha|PPP1A HGNC:9281|MIM:176875|Ensembl:ENSG00000172531|HPRD:15942|Vega:OTTHUMG00000167671 11 11q13 protein phosphatase 1, catalytic subunit, alpha isozyme protein-coding PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme O protein phosphatase 1, catalytic subunit, alpha isoform|serine/threonine protein phosphatase PP1-alpha 1 catalytic subunit|serine/threonine-protein phosphatase PP1-alpha catalytic subunit 20121230 -9606 5500 PPP1CB - PP-1B|PP1beta|PPP1CD HGNC:9282|MIM:600590|Ensembl:ENSG00000213639|HPRD:11792|Vega:OTTHUMG00000152011 2 2p23 protein phosphatase 1, catalytic subunit, beta isozyme protein-coding PPP1CB protein phosphatase 1, catalytic subunit, beta isozyme O protein phosphatase 1, catalytic subunit, beta isoform|protein phosphatase 1, catalytic subunit, delta isoform|protein phosphatase 1-beta|protein phosphatase 1-delta|serine/threonine protein phosphatase PP1-beta catalytic subunit|serine/threonine-protein phosphatase PP1-beta catalytic subunit 20121230 -9606 5501 PPP1CC - PP-1G|PPP1G HGNC:9283|MIM:176914|Ensembl:ENSG00000186298|HPRD:08911|Vega:OTTHUMG00000169531 12 12q24.1-q24.2 protein phosphatase 1, catalytic subunit, gamma isozyme protein-coding PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme O protein phosphatase 1, catalytic subunit, gamma isoform|protein phosphatase 1C catalytic subunit|serine/threonine phosphatase 1 gamma|serine/threonine-protein phosphatase PP1-gamma catalytic subunit 20121230 -9606 5502 PPP1R1A - I1|IPP1 HGNC:9286|MIM:613246|Ensembl:ENSG00000135447|HPRD:17893|Vega:OTTHUMG00000169934 12 12q13.2 protein phosphatase 1, regulatory (inhibitor) subunit 1A protein-coding PPP1R1A protein phosphatase 1, regulatory (inhibitor) subunit 1A O I-1|IPP-1|inhibitor-1|protein phosphatase 1 regulatory subunit 1A|protein phosphatase inhibitor 1|protein phosphatase inhibitor-1 20121230 -9606 5504 PPP1R2 - IPP-2|IPP2 HGNC:9288|MIM:601792|Ensembl:ENSG00000184203|HPRD:03478|Vega:OTTHUMG00000155887 3 3q29 protein phosphatase 1, regulatory (inhibitor) subunit 2 protein-coding PPP1R2 protein phosphatase 1, regulatory (inhibitor) subunit 2 O phosphatase inhibitor 2|phosphoprotein phosphatase|protein phosphatase inhibitor 2 20121230 -9606 5506 PPP1R3A - GM|PP1G|PPP1R3 HGNC:9291|MIM:600917|Ensembl:ENSG00000154415|HPRD:02950|Vega:OTTHUMG00000156944 7 7q31.1 protein phosphatase 1, regulatory subunit 3A protein-coding PPP1R3A protein phosphatase 1, regulatory subunit 3A O RG1|glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle|glycogen-associated regulatory subunit of protein phosphatase-1|protein phosphatase 1 glycogen- associated regulatory subunit|protein phosphatase 1 glycogen-associated regulatory subunit|protein phosphatase 1 regulatory subunit 3A|protein phosphatase 1 regulatory subunit GM|protein phosphatase 1, regulatory (inhibitor) subunit 3A|protein phosphatase type-1 glycogen targeting subunit|serine /threonine specific protein phosphatase|type-1 protein phosphatase skeletal muscle glycogen targeting subunit 20121230 -9606 5507 PPP1R3C - PPP1R5 HGNC:9293|MIM:602999|Ensembl:ENSG00000119938|HPRD:04298|Vega:OTTHUMG00000018745 10 10q23-q24 protein phosphatase 1, regulatory subunit 3C protein-coding PPP1R3C protein phosphatase 1, regulatory subunit 3C O PP1 subunit R5|PTG|Phosphatase 1, regulatory inhibitor subunit 5|protein phosphatase 1 regulatory subunit 3C|protein phosphatase 1 regulatory subunit 5|protein phosphatase 1, regulatory (inhibitor) subunit 3C|protein targeting to glycogen 20121230 -9606 5509 PPP1R3D - PPP1R6 HGNC:9294|MIM:603326|Ensembl:ENSG00000132825|HPRD:04507|Vega:OTTHUMG00000032876 20 20q13.3 protein phosphatase 1, regulatory subunit 3D protein-coding PPP1R3D protein phosphatase 1, regulatory subunit 3D O PP1 subunit R6|protein phosphatase 1 regulatory subunit 3D|protein phosphatase 1 regulatory subunit 6|protein phosphatase 1, regulatory (inhibitor) subunit 3D|protein phosphatase 1, regulatory subunit 6, spinophilin|protein phosphatase 1-binding subunit R6 20121230 -9606 5510 PPP1R7 - SDS22 HGNC:9295|MIM:602877|Ensembl:ENSG00000115685|HPRD:04192|Vega:OTTHUMG00000133390 2 2q37.3 protein phosphatase 1, regulatory subunit 7 protein-coding PPP1R7 protein phosphatase 1, regulatory subunit 7 O protein phosphatase 1 regulatory subunit 22|protein phosphatase 1 regulatory subunit 7|protein phosphatase 1, regulatory (inhibitor) subunit 7|protein phosphatase-1 regulatory subunit 7 alpha2|protein phosphatase-1 regulatory subunit 7 beta1|protein phosphatase-1 regulatory subunit 7 beta2 20121230 -9606 5511 PPP1R8 RP4-547C9.1 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 HGNC:9296|MIM:602636|Ensembl:ENSG00000117751|HPRD:04028|Vega:OTTHUMG00000003734 1 1p35.3 protein phosphatase 1, regulatory subunit 8 protein-coding PPP1R8 protein phosphatase 1, regulatory subunit 8 O RNase E|activator of RNA decay|nuclear inhibitor of protein phosphatase 1|nuclear inhibitor of protein phosphatase-1 alpha|nuclear subunit of PP-1|protein phosphatase 1 regulatory subunit 8|protein phosphatase 1, regulatory (inhibitor) subunit 8 20121230 -9606 5512 PPP1R8P1 - PPP1R8P HGNC:9297 1 1p33 protein phosphatase 1, regulatory subunit 8 pseudogene 1 pseudo PPP1R8P1 protein phosphatase 1, regulatory subunit 8 pseudogene 1 O - 20121230 -9606 5514 PPP1R10 DADB-129D20.4 CAT53|FB19|PNUTS|PP1R10|R111|p99 HGNC:9284|MIM:603771|Ensembl:ENSG00000204569|HPRD:04797|Vega:OTTHUMG00000031259 6 6p21.3 protein phosphatase 1, regulatory subunit 10 protein-coding PPP1R10 protein phosphatase 1, regulatory subunit 10 O HLA-C associated transcript 53|MHC class I region proline-rich protein CAT53|PP1-binding protein of 114 kDa|phosphatase 1 nuclear targeting subunit|protein phosphatase 1, regulatory (inhibitor) subunit 10|serine/threonine-protein phosphatase 1 regulatory subunit 10 20121230 -9606 5515 PPP2CA - PP2Ac|PP2CA|PP2Calpha|RP-C HGNC:9299|MIM:176915|Ensembl:ENSG00000113575|HPRD:08912|Vega:OTTHUMG00000129119 5 5q31.1 protein phosphatase 2, catalytic subunit, alpha isozyme protein-coding PPP2CA protein phosphatase 2, catalytic subunit, alpha isozyme O PP2A-alpha|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform|protein phosphatase 2A catalytic subunit, alpha isoform|replication protein C|serine/threonine protein phosphatase 2A, catalytic subunit, alpha isoform|serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform 20121230 -9606 5516 PPP2CB - PP2Abeta|PP2CB HGNC:9300|MIM:176916|Ensembl:ENSG00000104695|HPRD:01487|Vega:OTTHUMG00000163949 8 8p12 protein phosphatase 2, catalytic subunit, beta isozyme protein-coding PPP2CB protein phosphatase 2, catalytic subunit, beta isozyme O PP2A-beta|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform|protein phosphatase 2, catalytic subunit, beta isoform|protein phosphatase 2A catalytic subunit, beta isoform|protein phosphatase type 2A catalytic subunit|serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform|serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 20121230 -9606 5517 PPP2CBP1 - PPP2CBP HGNC:9301 16 16p11.2 protein phosphatase 2, catalytic subunit, beta isozyme pseudogene 1 pseudo PPP2CBP1 protein phosphatase 2, catalytic subunit, beta isozyme pseudogene 1 O - 20121230 -9606 5518 PPP2R1A - PP2A-Aalpha|PP2AAALPHA|PR65A HGNC:9302|MIM:605983|Ensembl:ENSG00000105568|HPRD:16184|Vega:OTTHUMG00000137367 19 19q13.41 protein phosphatase 2, regulatory subunit A, alpha protein-coding PPP2R1A protein phosphatase 2, regulatory subunit A, alpha O PP2A subunit A isoform PR65-alpha|PP2A subunit A isoform R1-alpha|medium tumor antigen-associated 61 KDA protein|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform|serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A, alpha isoform|serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 20121230 -9606 5519 PPP2R1B - PP2A-Abeta|PR65B HGNC:9303|MIM:603113|Ensembl:ENSG00000137713|HPRD:04384|Vega:OTTHUMG00000166741 11 11q23.2 protein phosphatase 2, regulatory subunit A, beta protein-coding PPP2R1B protein phosphatase 2, regulatory subunit A, beta O PP2A, subunit A, PR65-beta isoform|PP2A, subunit A, R1-beta isoform|protein phosphatase 2 (formerly 2A), regulatory subunit A, beta isoform|protein phosphatase 2, structural/regulatory subunit A, beta|serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 20121230 -9606 5520 PPP2R2A - B55A|B55ALPHA|PR52A|PR55A HGNC:9304|MIM:604941|Ensembl:ENSG00000221914|HPRD:09223|Vega:OTTHUMG00000163850 8 8p21.2 protein phosphatase 2, regulatory subunit B, alpha protein-coding PPP2R2A protein phosphatase 2, regulatory subunit B, alpha O protein phosphatase 2 (formerly 2A), regulatory subunit B (PR52), alpha isoform|serine/threonine protein phosphatase 2A, 55 KDA regulatory subunit B, alpha isoform|serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 20121230 -9606 5521 PPP2R2B - B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 HGNC:9305|MIM:604325|Ensembl:ENSG00000156475|HPRD:05059|Vega:OTTHUMG00000163381 5 5q32 protein phosphatase 2, regulatory subunit B, beta protein-coding PPP2R2B protein phosphatase 2, regulatory subunit B, beta O PP2A subunit B isoform B55-beta|PP2A subunit B isoform PR55-beta|PP2A subunit B isoform R2-beta|PP2A, subunit B, B-beta isoform|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform|protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform|serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B, beta isoform|serine/threonine protein phosphatase 2A, neuronal isoform|serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform 20121230 -9606 5522 PPP2R2C - B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G HGNC:9306|MIM:605997|Ensembl:ENSG00000074211|HPRD:09345|Vega:OTTHUMG00000090445 4 4p16.1 protein phosphatase 2, regulatory subunit B, gamma protein-coding PPP2R2C protein phosphatase 2, regulatory subunit B, gamma O PP2A, subunit B, B-gamma isoform|PP2A, subunit B, B55-gamma isoform|PP2A, subunit B, PR55-gamma isoform|PP2A, subunit B, R2-gamma isoform|gamma isoform of regulatory subunit B55, protein phosphatase 2|phosphoprotein phosphatase 2A BR gamma regulatory chain|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform|protein phosphatase 2A1 B gamma subunit|serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform 20121230 -9606 5523 PPP2R3A - PPP2R3|PR130|PR72 HGNC:9307|MIM:604944|Ensembl:ENSG00000073711|HPRD:09225|Vega:OTTHUMG00000159766 3 3q22.1 protein phosphatase 2, regulatory subunit B'', alpha protein-coding PPP2R3A protein phosphatase 2, regulatory subunit B'', alpha O PP2A subunit B isoforms B72/B130|PP2A, subunit B, R3 isoform|protein phosphatase 2 (formerly 2A), regulatory subunit B'' (PR 72), alpha isoform and (PR 130), beta isoform|serine/threonine-protein phosphatase 2A 72/130 kDa regulatory subunit B|serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha 20121230 -9606 5524 PPP2R4 RP11-247A12.4 PP2A|PR53|PTPA HGNC:9308|MIM:600756|Ensembl:ENSG00000119383|HPRD:02858|Vega:OTTHUMG00000020774 9 9q34 protein phosphatase 2A activator, regulatory subunit 4 protein-coding PPP2R4 protein phosphatase 2A activator, regulatory subunit 4 O PP2A phosphatase activator|PP2A subunit B' isoform PR53|phosphotyrosyl phosphatase activator|protein phosphatase 2A, regulatory subunit B' (PR 53)|serine/threonine-protein phosphatase 2A activator|serine/threonine-protein phosphatase 2A regulatory subunit B' 20121230 -9606 5525 PPP2R5A - B56A|PR61A HGNC:9309|MIM:601643|Ensembl:ENSG00000066027|HPRD:03384|Vega:OTTHUMG00000036750 1 1q32.2-q32.3 protein phosphatase 2, regulatory subunit B', alpha protein-coding PPP2R5A protein phosphatase 2, regulatory subunit B', alpha O PP2A B subunit isoform B'-alpha|PP2A B subunit isoform B56-alpha|PP2A B subunit isoform PR61-alpha|PP2A B subunit isoform R5-alpha|PP2A, B subunit, B' alpha isoform|PP2A, B subunit, B56 alpha isoform|PP2A, B subunit, PR61 alpha isoform|PP2A, B subunit, R5 alpha isoform|PR61alpha|protein phosphatase 2, regulatory subunit B (B56), alpha isoform|protein phosphatase 2, regulatory subunit B', alpha isoform|serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, alpha isoform|serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform 20121230 -9606 5526 PPP2R5B - B56B|PR61B HGNC:9310|MIM:601644|Ensembl:ENSG00000068971|HPRD:09038|Vega:OTTHUMG00000150043 11 11q12 protein phosphatase 2, regulatory subunit B', beta protein-coding PPP2R5B protein phosphatase 2, regulatory subunit B', beta O PP2A B subunit isoform B'-beta|PP2A B subunit isoform B56-beta|PP2A B subunit isoform PR61-beta|PP2A B subunit isoform R5-beta|protein phosphatase 2, regulatory subunit B', beta isoform|serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, beta isoform|serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform 20121230 -9606 5527 PPP2R5C - B56G|PR61G HGNC:9311|MIM:601645|Ensembl:ENSG00000078304|HPRD:03385|Vega:OTTHUMG00000171597 14 14q32.31 protein phosphatase 2, regulatory subunit B', gamma protein-coding PPP2R5C protein phosphatase 2, regulatory subunit B', gamma O B' alpha regulatory subunit|PP2A B subunit isoform B'-gamma|PP2A B subunit isoform B56-gamma|PP2A B subunit isoform PR61-gamma|PP2A B subunit isoform R5-gamma|protein phosphatase 2, regulatory subunit B (B56), gamma isoform|protein phosphatase 2, regulatory subunit B', gamma isoform|renal carcinoma antigen NY-REN-29|serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform 20121230 -9606 5528 PPP2R5D - B56D HGNC:9312|MIM:601646|Ensembl:ENSG00000112640|HPRD:09039|Vega:OTTHUMG00000014716 6 6p21.1 protein phosphatase 2, regulatory subunit B', delta protein-coding PPP2R5D protein phosphatase 2, regulatory subunit B', delta O PP2A B subunit isoform B'-delta|PP2A B subunit isoform B56-delta|PP2A B subunit isoform PR61-delta|PP2A B subunit isoform R5-delta|PP2A, B subunit, B' delta isoform|PP2A, B subunit, B56 delta isoform|PP2A, B subunit, PR61 delta isoform|PP2A, B subunit, R5 delta isoform|Serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform|protein phosphatase 2, regulatory subunit B (B56), delta isoform|protein phosphatase 2, regulatory subunit B', delta isoform|serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 20121230 -9606 5529 PPP2R5E - - HGNC:9313|MIM:601647|Ensembl:ENSG00000154001|HPRD:09040|Vega:OTTHUMG00000140341 14 14q23.1 protein phosphatase 2, regulatory subunit B', epsilon isoform protein-coding PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform O PP2A B subunit isoform B'-epsilon|PP2A B subunit isoform B56-epsilon|PP2A B subunit isoform PR61-epsilon|PP2A B subunit isoform R5-epsilon|PP2A, B subunit, B' epsilon|PP2A, B subunit, B56 epsilon|PP2A, B subunit, PR61 epsilon|PP2A, B subunit, R5 epsilon|epsilon isoform of regulatory subunit B56, protein phosphatase 2A|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform|serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, epsilon|serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 20121230 -9606 5530 PPP3CA - CALN|CALNA|CALNA1|CCN1|CNA1|PPP2B HGNC:9314|MIM:114105|Ensembl:ENSG00000138814|HPRD:00234|Vega:OTTHUMG00000133839 4 4q24 protein phosphatase 3, catalytic subunit, alpha isozyme protein-coding PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme O CAM-PRP catalytic subunit|calcineurin A alpha|calmodulin-dependent calcineurin A subunit alpha isoform|protein phosphatase 2B, catalytic subunit, alpha isoform|protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform|serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 20121230 -9606 5531 PPP4C - PP4|PP4C|PPH3|PPP4|PPX HGNC:9319|MIM:602035|Ensembl:ENSG00000149923|HPRD:03615|Vega:OTTHUMG00000132113 16 16p11.2 protein phosphatase 4, catalytic subunit protein-coding PPP4C protein phosphatase 4, catalytic subunit O PP-X|protein phosphatase 4 (formerly X), catalytic subunit|protein phosphatase X, catalytic subunit|serine/threonine-protein phosphatase 4 catalytic subunit 20121230 -9606 5532 PPP3CB RP11-345K20.1 CALNA2|CALNB|CNA2|PP2Bbeta HGNC:9315|MIM:114106|Ensembl:ENSG00000107758|HPRD:00235|Vega:OTTHUMG00000018472 10 10q22.2 protein phosphatase 3, catalytic subunit, beta isozyme protein-coding PPP3CB protein phosphatase 3, catalytic subunit, beta isozyme O CAM-PRP catalytic subunit|calcineurin A beta|calcineurin A2|calmodulin-dependent calcineurin A subunit beta isoform|protein phosphatase 2B, catalytic subunit, beta isoform|protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform|protein phosphatase from PCR fragment H32|serine/threonine-protein phosphatase 2B catalytic subunit beta isoform 20121230 -9606 5533 PPP3CC - CALNA3|CNA3|PP2Bgamma HGNC:9316|MIM:114107|Ensembl:ENSG00000120910|HPRD:00236|Vega:OTTHUMG00000163802 8 8p21.3 protein phosphatase 3, catalytic subunit, gamma isozyme protein-coding PPP3CC protein phosphatase 3, catalytic subunit, gamma isozyme O CAM-PRP catalytic subunit|calcineurin, testis-specific catalytic subunit|calmodulin-dependent calcineurin A subunit gamma isoform|protein phosphatase 2B, catalytic subunit, gamma isoform|protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform|serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform 20121230 -9606 5534 PPP3R1 - CALNB1|CNB|CNB1 HGNC:9317|MIM:601302|Ensembl:ENSG00000221823|HPRD:03195|Vega:OTTHUMG00000129561 2 2p15 protein phosphatase 3, regulatory subunit B, alpha protein-coding PPP3R1 protein phosphatase 3, regulatory subunit B, alpha O calcineurin B, type I (19kDa)|calcineurin subunit B type 1|protein phosphatase 2B regulatory subunit 1|protein phosphatase 2B regulatory subunit B alpha|protein phosphatase 3 (formerly 2B), regulatory subunit B (19kD), alpha isoform (calcineurin B, type I)|protein phosphatase 3 (formerly 2B), regulatory subunit B, 19kDa, alpha isoform (calcineurin B, type I)|protein phosphatase 3 (formerly 2B), regulatory subunit B, alpha isoform 20121230 -9606 5535 PPP3R2 RP11-102M4.2 PPP3RL HGNC:9318|MIM:613821|Ensembl:ENSG00000188386|HPRD:10164|Vega:OTTHUMG00000020386 9 9q31.1 protein phosphatase 3, regulatory subunit B, beta protein-coding PPP3R2 protein phosphatase 3, regulatory subunit B, beta O CBLP|CNBII|calcineurin B, type II (19kDa)|calcineurin B-like protein|calcineurin BII|calcineurin subunit B type 2|protein phosphatase 2B regulatory subunit 2|protein phosphatase 3 (formerly 2B), regulatory subunit B (19kD), beta isoform (calcineurin B, type II)|protein phosphatase 3 (formerly 2B), regulatory subunit B, 19kDa, beta isoform (calcineurin B, type II)|protein phosphatase 3 (formerly 2B), regulatory subunit B, beta isoform|protein phosphatase 3 regulatory subunit B beta isoform 20121230 -9606 5536 PPP5C - PP5|PPP5|PPT HGNC:9322|MIM:600658|Ensembl:ENSG00000011485|HPRD:02805|Vega:OTTHUMG00000134287 19 19q13.3 protein phosphatase 5, catalytic subunit protein-coding PPP5C protein phosphatase 5, catalytic subunit O PP-T|protein phosphatase T|serine/threonine-protein phosphatase 5 20121230 -9606 5537 PPP6C RP11-366O20.1 PP6|PP6C HGNC:9323|MIM:612725|Ensembl:ENSG00000119414|HPRD:02141|Vega:OTTHUMG00000020671 9 9q33.3 protein phosphatase 6, catalytic subunit protein-coding PPP6C protein phosphatase 6, catalytic subunit O serine/threonine protein phosphatase catalytic subunit|serine/threonine-protein phosphatase 6 catalytic subunit 20121230 -9606 5538 PPT1 RP11-115D7.2 CLN1|INCL|PPT HGNC:9325|MIM:600722|Ensembl:ENSG00000131238|HPRD:07203|Vega:OTTHUMG00000004495 1 1p32 palmitoyl-protein thioesterase 1 protein-coding PPT1 palmitoyl-protein thioesterase 1 O ceroid-palmitoyl-palmitoyl-protein thioesterase 1|palmitoyl-protein hydrolase 1 20121230 -9606 5539 PPY - PNP HGNC:9327|MIM:167780|Ensembl:ENSG00000108849|HPRD:01340|Vega:OTTHUMG00000181800 17 17q21 pancreatic polypeptide protein-coding PPY pancreatic polypeptide O PP|pancreatic polypeptide Y|pancreatic prohormone 20121230 -9606 5540 PPYR1 - NPY4-R|NPY4R|PP1|Y4 HGNC:9329|MIM:601790|Ensembl:ENSG00000204174|HPRD:03476 10 10q11.2 pancreatic polypeptide receptor 1 protein-coding PPYR1 pancreatic polypeptide receptor 1 O neuropeptide Y receptor type 4 20121230 -9606 5541 PR@ - SPC HGNC:9335 12 12p13.2 proline-rich protein gene cluster other PR@ proline-rich protein gene cluster O - 20080828 -9606 5542 PRB1 - PM|PMF|PMS|PRB1L|PRB1M HGNC:9337|MIM:180989|Ensembl:ENSG00000251655|HPRD:01623|Vega:OTTHUMG00000157263 12 12p13.2 proline-rich protein BstNI subfamily 1 protein-coding PRB1 proline-rich protein BstNI subfamily 1 O BstNI type basic salivary proline-rich protein 1|PRB1 large length copy|basic proline-rich protein|basic salivary proline-rich protein 1|parotid middle band protein|salivary proline-rich protein 1|salivary protein Pe 20121230 -9606 5544 PRB3 - G1|PRG HGNC:9339|MIM:168840|Ensembl:ENSG00000197870|HPRD:01352|Vega:OTTHUMG00000169065 12 12p13.2 proline-rich protein BstNI subfamily 3 protein-coding PRB3 proline-rich protein BstNI subfamily 3 O BstNI type basic salivary proline-rich protein 3|G1 parotid salivary glycoprotein|basic salivary proline-rich protein 3|parotid salivary glycoprotein G1|proline-rich protein G1 20121230 -9606 5545 PRB4 - Po HGNC:9340|MIM:180990|Ensembl:ENSG00000230657|HPRD:01624|Vega:OTTHUMG00000169116 12 12p13.2 proline-rich protein BstNI subfamily 4 protein-coding PRB4 proline-rich protein BstNI subfamily 4 O BstNI type basic salivary proline-rich protein 4|basic salivary proline-rich protein 4|parotid 'o' protein|parotid o protein|saliary protein Po|salivary proline-rich protein II-1|salivary proline-rich protein Po 20121230 -9606 5546 PRCC RP11-66D17.11-004 RCCP1|TPRC HGNC:9343|MIM:179755|Ensembl:ENSG00000143294|HPRD:01562|Vega:OTTHUMG00000041294 1 1q21.1 papillary renal cell carcinoma (translocation-associated) protein-coding PRCC papillary renal cell carcinoma (translocation-associated) O papillary renal cell carcinoma translocation-associated gene protein|proline-rich protein PRCC 20121230 -9606 5547 PRCP - HUMPCP|PCP HGNC:9344|MIM:176785|Ensembl:ENSG00000137509|HPRD:08352|Vega:OTTHUMG00000166899 11 11q14 prolylcarboxypeptidase (angiotensinase C) protein-coding PRCP prolylcarboxypeptidase (angiotensinase C) O angiotensinase C|lysosomal Pro-X carboxypeptidase|lysosomal carboxypeptidase C|proline carboxypeptidase|prolylcarboxypeptidase isoform 1 preproprotein 20121230 -9606 5548 PRD - - HGNC:9345|MIM:312550 X Xp11.3 primary retinal dysplasia unknown PRD primary retinal dysplasia O - 20121209 -9606 5549 PRELP RP11-91B9.1 MST161|MSTP161|SLRR2A HGNC:9357|MIM:601914|Ensembl:ENSG00000188783|HPRD:03556|Vega:OTTHUMG00000035911 1 1q32 proline/arginine-rich end leucine-rich repeat protein protein-coding PRELP proline/arginine-rich end leucine-rich repeat protein O 55 kDa leucine-rich repeat protein of articular cartilage|prolargin|prolargin proteoglycan|proline-arginine-rich end leucine-rich repeat protein 20121230 -9606 5550 PREP RP3-355L5.1 PE|PEP HGNC:9358|MIM:600400|Ensembl:ENSG00000085377|HPRD:02673|Vega:OTTHUMG00000015297 6 6q22 prolyl endopeptidase protein-coding PREP prolyl endopeptidase O dJ355L5.1 (prolyl endopeptidase)|post-proline cleaving enzyme|prolyl oligopeptidase 20121230 -9606 5551 PRF1 RP11-710A11.3 FLH2|HPLH2|P1|PFN1|PFP HGNC:9360|MIM:170280|Ensembl:ENSG00000180644|HPRD:01362|Vega:OTTHUMG00000018412 10 10q22 perforin 1 (pore forming protein) protein-coding PRF1 perforin 1 (pore forming protein) O cytolysin|lymphocyte pore forming protein|lymphocyte pore-forming protein|perforin-1 20121230 -9606 5552 SRGN - PPG|PRG|PRG1 HGNC:9361|MIM:177040|Ensembl:ENSG00000122862|HPRD:01513|Vega:OTTHUMG00000018369 10 10q22.1 serglycin protein-coding SRGN serglycin O hematopoetic proteoglycan core peptide|hematopoetic proteoglycan core protein|hematopoietic proteoglycan core protein|p.PG|platelet proteoglycan core protein|proteoglycan 1, secretory granule|proteoglycan protein core for mast cell secretory granule|secretory granule proteoglycan core peptide|secretory granule proteoglycan core protein|serglycin proteoglycan 20121230 -9606 5553 PRG2 - BMPG|MBP|MBP1 HGNC:9362|MIM:605601|Ensembl:ENSG00000186652|HPRD:09283|Vega:OTTHUMG00000167027 11 11q12 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) protein-coding PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) O bone marrow proteoglycan|bone-marrow proteoglycan|eosinophil granule major basic protein|eosinophil major basic protein|natural killer cell activator|proteoglycan 2 preproprotein 20121230 -9606 5554 PRH1 - PA HGNC:9366|MIM:168730|Ensembl:ENSG00000231887|HPRD:01349 12 12p13.2 proline-rich protein HaeIII subfamily 1 protein-coding PRH1 proline-rich protein HaeIII subfamily 1 O - 20121230 -9606 5555 PRH2 - PIF-S|PRH1|PRP-1/PRP-2|Pr|db-s|pa|pr1/Pr2 HGNC:9367|MIM:168790|Ensembl:ENSG00000134551|HPRD:01350|Vega:OTTHUMG00000168556 12 12p13.2 proline-rich protein HaeIII subfamily 2 protein-coding PRH2 proline-rich protein HaeIII subfamily 2 O acidic salivary proline-rich protein, HaeIII type, 2|parotid acidic protein|parotid double-band protein|parotid isoelectric focusing variant protein|parotid proline-rich protein 1/2|protein C|salivary acidic proline-rich phosphoprotein 1/2 20121230 -9606 5557 PRIM1 - p49 HGNC:9369|MIM:176635|Ensembl:ENSG00000198056|HPRD:08899|Vega:OTTHUMG00000170034 12 12q13 primase, DNA, polypeptide 1 (49kDa) protein-coding PRIM1 primase, DNA, polypeptide 1 (49kDa) O DNA primase 1|DNA primase 49 kDa subunit|DNA primase small subunit|DNA primase subunit 48|primase p49 subunit|primase polypeptide 1, 49kDa 20121230 -9606 5558 PRIM2 RP3-401D24.1 PRIM2A|p58 HGNC:9370|MIM:176636|HPRD:08900 6 6p12-p11.1 primase, DNA, polypeptide 2 (58kDa) protein-coding PRIM2 primase, DNA, polypeptide 2 (58kDa) O DNA primase 58 kDa subunit|DNA primase large subunit|DNA primase subunit p58|dJ422B11.1.1|primase polypeptide 2A, 58kDa 20121230 -9606 5562 PRKAA1 - AMPK|AMPKa1 HGNC:9376|MIM:602739|Ensembl:ENSG00000132356|HPRD:04115|Vega:OTTHUMG00000162269 5 5p12 protein kinase, AMP-activated, alpha 1 catalytic subunit protein-coding PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit O 5'-AMP-activated protein kinase catalytic subunit alpha-1|5'-AMP-activated protein kinase, catalytic alpha-1 chain|ACACA kinase|AMP -activate kinase alpha 1 subunit|AMP-activated protein kinase, catalytic, alpha-1|AMPK alpha 1|AMPK subunit alpha-1|HMGCR kinase|acetyl-CoA carboxylase kinase|hydroxymethylglutaryl-CoA reductase kinase|tau-protein kinase PRKAA1 20121230 -9606 5563 PRKAA2 - AMPK|AMPK2|AMPKa2|PRKAA HGNC:9377|MIM:600497|Ensembl:ENSG00000162409|HPRD:02735|Vega:OTTHUMG00000008282 1 1p31 protein kinase, AMP-activated, alpha 2 catalytic subunit protein-coding PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit O 5'-AMP-activated protein kinase catalytic subunit alpha-2|5'-AMP-activated protein kinase, catalytic alpha-2 chain|ACACA kinase|AMPK subunit alpha-2|AMPK-alpha-2 chain|HMGCR kinase|acetyl-CoA carboxylase kinase|hydroxymethylglutaryl-CoA reductase kinase 20121230 -9606 5564 PRKAB1 - AMPK|HAMPKb HGNC:9378|MIM:602740|Ensembl:ENSG00000111725|HPRD:04116|Vega:OTTHUMG00000168954 12 12q24.1-q24.3 protein kinase, AMP-activated, beta 1 non-catalytic subunit protein-coding PRKAB1 protein kinase, AMP-activated, beta 1 non-catalytic subunit O 5'-AMP-activated protein kinase beta-1 subunit|5'-AMP-activated protein kinase subunit beta-1|AMP-activated protein kinase beta subunit|AMPK beta -1 chain|AMPK beta 1|AMPK subunit beta-1|AMPKb|protein kinase, AMP-activated, noncatalytic, beta-1 20121230 -9606 5565 PRKAB2 - - HGNC:9379|MIM:602741|Ensembl:ENSG00000131791|HPRD:04117|Vega:OTTHUMG00000014032 1 1q21.1 protein kinase, AMP-activated, beta 2 non-catalytic subunit protein-coding PRKAB2 protein kinase, AMP-activated, beta 2 non-catalytic subunit O 5'-AMP-activated protein kinase subunit beta-2|5'-AMP-activated protein kinase, beta-2 subunit|AMPK beta 2|AMPK beta-2 chain|AMPK subunit beta-2 20121230 -9606 5566 PRKACA - PKACA HGNC:9380|MIM:601639|Ensembl:ENSG00000072062|HPRD:03382|Vega:OTTHUMG00000182051 19 19p13.1 protein kinase, cAMP-dependent, catalytic, alpha protein-coding PRKACA protein kinase, cAMP-dependent, catalytic, alpha O PKA C-alpha|cAMP-dependent protein kinase catalytic subunit alpha|protein kinase A catalytic subunit 20121230 -9606 5567 PRKACB RP11-82H13.1 PKACB HGNC:9381|MIM:176892|Ensembl:ENSG00000142875|HPRD:01482|Vega:OTTHUMG00000009975 1 1p31.1 protein kinase, cAMP-dependent, catalytic, beta protein-coding PRKACB protein kinase, cAMP-dependent, catalytic, beta O PKA C-beta|cAMP-dependent protein kinase catalytic beta subunit isoform 4ab|cAMP-dependent protein kinase catalytic subunit beta|protein kinase A catalytic subunit beta 20121230 -9606 5568 PRKACG - KAPG|PKACg HGNC:9382|MIM:176893|Ensembl:ENSG00000165059|HPRD:01483|Vega:OTTHUMG00000019974 9 9q13 protein kinase, cAMP-dependent, catalytic, gamma protein-coding PRKACG protein kinase, cAMP-dependent, catalytic, gamma O PKA C-gamma|cAMP-dependent protein kinase catalytic subunit gamma|serine(threonine) protein kinase 20121230 -9606 5569 PKIA - PRKACN1 HGNC:9017|MIM:606059|Ensembl:ENSG00000171033|HPRD:05828|Vega:OTTHUMG00000164618 8 8q21.12 protein kinase (cAMP-dependent, catalytic) inhibitor alpha protein-coding PKIA protein kinase (cAMP-dependent, catalytic) inhibitor alpha O PKI-alpha|cAMP-dependent protein kinase inhibitor alpha|cAMP-dependent protein kinase inhibitor, muscle/brain isoform 20121230 -9606 5570 PKIB RP11-95G17.1 PRKACN2 HGNC:9018|MIM:606914|Ensembl:ENSG00000135549|HPRD:06075|Vega:OTTHUMG00000015488 6 6q22.31 protein kinase (cAMP-dependent, catalytic) inhibitor beta protein-coding PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta O PKI-beta|cAMP-dependent protein kinase inhibitor 2|cAMP-dependent protein kinase inhibitor beta 20121230 -9606 5571 PRKAG1 - AMPKG HGNC:9385|MIM:602742|Ensembl:ENSG00000181929|HPRD:04118|Vega:OTTHUMG00000170406 12 12q12-q14 protein kinase, AMP-activated, gamma 1 non-catalytic subunit protein-coding PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit O 5'-AMP-activated protein kinase subunit gamma-1|5'-AMP-activated protein kinase, gamma-1 subunit|AMPK gamma-1 chain|AMPK gamma1 20121230 -9606 5573 PRKAR1A - ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 HGNC:9388|MIM:188830|Ensembl:ENSG00000108946|HPRD:01786|Vega:OTTHUMG00000180128 17 17q23-q24 protein kinase, cAMP-dependent, regulatory, type I, alpha protein-coding PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha O cAMP-dependent protein kinase regulatory subunit RIalpha|cAMP-dependent protein kinase type I-alpha regulatory chain|cAMP-dependent protein kinase type I-alpha regulatory subunit|protein kinase A type 1a regulatory subunit|tissue specific extinguisher 1|tissue-specific extinguisher 1 20121230 -9606 5574 PRKAR1AP - - HGNC:9389 1 1p22.1 protein kinase, cAMP-dependent, regulatory, type I, alpha pseudogene pseudo PRKAR1AP protein kinase, cAMP-dependent, regulatory, type I, alpha pseudogene O - 20121230 -9606 5575 PRKAR1B - PRKAR1 HGNC:9390|MIM:176911|Ensembl:ENSG00000188191|HPRD:01485|Vega:OTTHUMG00000151411 7 7p22 protein kinase, cAMP-dependent, regulatory, type I, beta protein-coding PRKAR1B protein kinase, cAMP-dependent, regulatory, type I, beta O cAMP-dependent protein kinase type I-beta regulatory subunit 20121230 -9606 5576 PRKAR2A - PKR2|PRKAR2 HGNC:9391|MIM:176910|Ensembl:ENSG00000114302|HPRD:01484|Vega:OTTHUMG00000133540 3 3p21.3-p21.2 protein kinase, cAMP-dependent, regulatory, type II, alpha protein-coding PRKAR2A protein kinase, cAMP-dependent, regulatory, type II, alpha O cAMP-dependent protein kinase regulatory subunit RII alpha|cAMP-dependent protein kinase type II-alpha regulatory subunit|protein kinase A, RII-alpha subunit 20121230 -9606 5577 PRKAR2B - PRKAR2|RII-BETA HGNC:9392|MIM:176912|Ensembl:ENSG00000005249|HPRD:01486|Vega:OTTHUMG00000137418 7 7q22 protein kinase, cAMP-dependent, regulatory, type II, beta protein-coding PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta O H_RG363E19.2|WUGSC:H_RG363E19.2|cAMP-dependent protein kinase type II-beta regulatory chain|cAMP-dependent protein kinase type II-beta regulatory subunit 20121230 -9606 5578 PRKCA - AAG6|PKC-alpha|PKCA|PRKACA HGNC:9393|MIM:176960|Ensembl:ENSG00000154229|HPRD:01498|Vega:OTTHUMG00000179533 17 17q22-q23.2 protein kinase C, alpha protein-coding PRKCA protein kinase C, alpha O PKC-A|aging-associated gene 6|protein kinase C alpha type 20121230 -9606 5579 PRKCB - PKC-beta|PKCB|PRKCB1|PRKCB2 HGNC:9395|MIM:176970|Ensembl:ENSG00000166501|HPRD:01499|Vega:OTTHUMG00000131615 16 16p11.2 protein kinase C, beta protein-coding PRKCB protein kinase C, beta O PKC-B|protein kinase C beta type|protein kinase C, beta 1 polypeptide 20121230 -9606 5580 PRKCD - MAY1|PKCD|nPKC-delta HGNC:9399|MIM:176977|Ensembl:ENSG00000163932|HPRD:01501|Vega:OTTHUMG00000133659 3 3p21.31 protein kinase C, delta protein-coding PRKCD protein kinase C, delta O protein kinase C delta VIII|protein kinase C delta type|tyrosine-protein kinase PRKCD 20121230 -9606 5581 PRKCE - PKCE|nPKC-epsilon HGNC:9401|MIM:176975|Ensembl:ENSG00000171132|HPRD:01500|Vega:OTTHUMG00000128817 2 2p21 protein kinase C, epsilon protein-coding PRKCE protein kinase C, epsilon O protein kinase C epsilon type 20121230 -9606 5582 PRKCG - PKC-gamma|PKCC|PKCG|SCA14 HGNC:9402|MIM:176980|Ensembl:ENSG00000126583|HPRD:01502|Vega:OTTHUMG00000064846 19 19q13.4 protein kinase C, gamma protein-coding PRKCG protein kinase C, gamma O protein kinase C gamma type 20121230 -9606 5583 PRKCH - PKC-L|PKCL|PRKCL|nPKC-eta HGNC:9403|MIM:605437|Ensembl:ENSG00000027075|HPRD:05669|Vega:OTTHUMG00000152341 14 14q23.1 protein kinase C, eta protein-coding PRKCH protein kinase C, eta O protein kinase C eta type 20121230 -9606 5584 PRKCI - DXS1179E|PKCI|nPKC-iota HGNC:9404|MIM:600539|Ensembl:ENSG00000163558|HPRD:02105|Vega:OTTHUMG00000150214 3 3q26.3 protein kinase C, iota protein-coding PRKCI protein kinase C, iota O PRKC-lambda/iota|aPKC-lambda/iota|atypical protein kinase C-lambda/iota|protein kinase C iota type 20121230 -9606 5585 PKN1 - DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1 HGNC:9405|MIM:601032|Ensembl:ENSG00000123143|HPRD:03019|Vega:OTTHUMG00000039611 19 19p13.12 protein kinase N1 protein-coding PKN1 protein kinase N1 O protease-activated kinase 1|protein kinase C-like 1|protein kinase C-like PKN|protein kinase C-related kinase 1|protein kinase PKN-alpha|protein-kinase C-related kinase 1|serine-threonine kinase N|serine-threonine protein kinase N|serine/threonine protein kinase N|serine/threonine-protein kinase N1 20121230 -9606 5586 PKN2 RP5-905H16.1 PAK2|PRK2|PRKCL2|PRO2042|Pak-2 HGNC:9406|MIM:602549|Ensembl:ENSG00000065243|HPRD:03972|Vega:OTTHUMG00000010074 1 1p22.2 protein kinase N2 protein-coding PKN2 protein kinase N2 O PKN gamma|cardiolipin-activated protein kinase Pak2|protein kinase C-like 2|protein-kinase C-related kinase 2|serine/threonine-protein kinase N2 20121230 -9606 5587 PRKD1 - PKC-MU|PKCM|PKD|PRKCM HGNC:9407|MIM:605435|Ensembl:ENSG00000184304|HPRD:05668|Vega:OTTHUMG00000140203 14 14q11 protein kinase D1 protein-coding PRKD1 protein kinase D1 O nPKC-D1|nPKC-mu|protein kinase C mu type|protein kinase C, mu|protein kinase D|serine/threonine-protein kinase D1 20121230 -9606 5588 PRKCQ RP11-563J2.1 PRKCT|nPKC-theta HGNC:9410|MIM:600448|Ensembl:ENSG00000065675|HPRD:02710|Vega:OTTHUMG00000017623 10 10p15 protein kinase C, theta protein-coding PRKCQ protein kinase C, theta O protein kinase C theta type 20121230 -9606 5589 PRKCSH - AGE-R2|G19P1|PCLD|PKCSH|PLD1 HGNC:9411|MIM:177060|Ensembl:ENSG00000130175|HPRD:03518|Vega:OTTHUMG00000182029 19 19p13.2 protein kinase C substrate 80K-H protein-coding PRKCSH protein kinase C substrate 80K-H O AGE-binding receptor 2|glucosidase 2 subunit beta|glucosidase II subunit beta|glucosidase II, beta subunit|hepatocystin|protein kinase C substrate 60.1 kDa protein heavy chain|protein kinase C substrate, 80 Kda protein 20121230 -9606 5590 PRKCZ RP11-181G12.1 PKC-ZETA|PKC2 HGNC:9412|MIM:176982|Ensembl:ENSG00000067606|HPRD:01504|Vega:OTTHUMG00000001238 1 1p36.33-p36.2 protein kinase C, zeta protein-coding PRKCZ protein kinase C, zeta O nPKC-zeta|protein kinase C zeta type 20121230 -9606 5591 PRKDC - DNA-PKcs|DNAPK|DNPK1|HYRC|HYRC1|XRCC7|p350 HGNC:9413|MIM:600899|Ensembl:ENSG00000253729|HPRD:02941 8 8q11 protein kinase, DNA-activated, catalytic polypeptide protein-coding PRKDC protein kinase, DNA-activated, catalytic polypeptide O DNA-PK catalytic subunit|DNA-dependent protein kinase catalytic subunit|hyper-radiosensitivity of murine scid mutation, complementing 1|p460 20121230 -9606 5592 PRKG1 RP11-346D6.1 1|PKG|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha HGNC:9414|MIM:176894|Ensembl:ENSG00000185532|HPRD:08910|Vega:OTTHUMG00000018248 10 10q11.2 protein kinase, cGMP-dependent, type I protein-coding PRKG1 protein kinase, cGMP-dependent, type I O cGMP-dependent protein kinase 1|protein kinase, cGMP-dependent, regulatory, type I, beta 20121230 -9606 5593 PRKG2 - PRKGR2|cGKII HGNC:9416|MIM:601591|Ensembl:ENSG00000138669|HPRD:09034|Vega:OTTHUMG00000130296 4 4q13.1-q21.1 protein kinase, cGMP-dependent, type II protein-coding PRKG2 protein kinase, cGMP-dependent, type II O cGK 2|cGK2|cGMP-dependent protein kinase 2|cGMP-dependent protein kinase II 20121230 -9606 5594 MAPK1 - ERK|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk HGNC:6871|MIM:176948|Ensembl:ENSG00000100030|HPRD:01496|Vega:OTTHUMG00000030508 22 22q11.21 mitogen-activated protein kinase 1 protein-coding MAPK1 mitogen-activated protein kinase 1 O ERK-2|MAP kinase 1|MAP kinase 2|MAP kinase isoform p42|MAPK 2|extracellular signal-regulated kinase 2|mitogen-activated protein kinase 2|p42-MAPK|protein tyrosine kinase ERK2 20121230 -9606 5595 MAPK3 - ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK HGNC:6877|MIM:601795|Ensembl:ENSG00000102882|HPRD:03479|Vega:OTTHUMG00000132149 16 16p11.2 mitogen-activated protein kinase 3 protein-coding MAPK3 mitogen-activated protein kinase 3 O MAP kinase 1|MAP kinase 3|MAP kinase isoform p44|MAPK 1|extracellular signal-regulated kinase 1|extracellular signal-related kinase 1|insulin-stimulated MAP2 kinase|microtubule-associated protein 2 kinase|mitogen-activated protein kinase 1 20121230 -9606 5596 MAPK4 - ERK-4|ERK3|Erk4|MAPK 4|PRKM4|p63MAPK HGNC:6878|MIM:176949|Ensembl:ENSG00000141639|HPRD:01497|Vega:OTTHUMG00000179853 18 18q21.1 mitogen-activated protein kinase 4 protein-coding MAPK4 mitogen-activated protein kinase 4 O Erk3-related|MAP kinase 4|MAP kinase isoform p63|extracellular signal-regulated kinase 4|p63-MAPK 20121230 -9606 5597 MAPK6 - ERK3|HsT17250|PRKM6|p97MAPK HGNC:6879|MIM:602904|Ensembl:ENSG00000069956|HPRD:04213|Vega:OTTHUMG00000131891 15 15q21 mitogen-activated protein kinase 6 protein-coding MAPK6 mitogen-activated protein kinase 6 O ERK-3|MAP kinase 6|MAP kinase isoform p97|MAPK 6|extracellular signal-regulated kinase 3|extracellular signal-regulated kinase, p97|p97-MAPK|protein kinase, mitogen-activated 5|protein kinase, mitogen-activated 6 20121230 -9606 5598 MAPK7 - BMK1|ERK4|ERK5|PRKM7 HGNC:6880|MIM:602521|Ensembl:ENSG00000166484|HPRD:03952|Vega:OTTHUMG00000059587 17 17p11.2 mitogen-activated protein kinase 7 protein-coding MAPK7 mitogen-activated protein kinase 7 O BMK-1|BMK1 kinase|ERK-5|MAP kinase 7|MAPK 7|big MAP kinase 1|extracellular signal-regulated kinase 5|extracellular-signal-regulated kinase 5 20121230 -9606 5599 MAPK8 - JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c HGNC:6881|MIM:601158|Ensembl:ENSG00000107643|HPRD:03100|Vega:OTTHUMG00000018172 10 10q11.22 mitogen-activated protein kinase 8 protein-coding MAPK8 mitogen-activated protein kinase 8 O JUN N-terminal kinase|MAP kinase 8|c-Jun N-terminal kinase 1|mitogen-activated protein kinase 8 isoform JNK1 alpha1|mitogen-activated protein kinase 8 isoform JNK1 beta2|stress-activated protein kinase 1|stress-activated protein kinase 1c 20121230 -9606 5600 MAPK11 - P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta HGNC:6873|MIM:602898|Ensembl:ENSG00000185386|HPRD:04208|Vega:OTTHUMG00000150226 22 22q13.33 mitogen-activated protein kinase 11 protein-coding MAPK11 mitogen-activated protein kinase 11 O MAP kinase 11|MAP kinase p38 beta|MAPK 11|mitogen-activated protein kinase p38 beta|mitogen-activated protein kinase p38-2|stress-activated protein kinase 2|stress-activated protein kinase 2b|stress-activated protein kinase-2|stress-activated protein kinase-2b 20121230 -9606 5601 MAPK9 - JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK HGNC:6886|MIM:602896|Ensembl:ENSG00000050748|HPRD:04206|Vega:OTTHUMG00000130934 5 5q35 mitogen-activated protein kinase 9 protein-coding MAPK9 mitogen-activated protein kinase 9 O Jun kinase|MAP kinase 9|MAPK 9|c-Jun N-terminal kinase 2|c-Jun kinase 2|stress-activated protein kinase 1a|stress-activated protein kinase JNK2 20121230 -9606 5602 MAPK10 - JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK HGNC:6872|MIM:602897|Ensembl:ENSG00000109339|HPRD:04207|Vega:OTTHUMG00000130604 4 4q22.1-q23 mitogen-activated protein kinase 10 protein-coding MAPK10 mitogen-activated protein kinase 10 O JNK3 alpha protein kinase|MAP kinase 10|MAP kinase p49 3F12|MAPK 10|c-Jun N-terminal kinase 3|stress activated protein kinase beta|stress-activated protein kinase 1b|stress-activated protein kinase JNK3 20121230 -9606 5603 MAPK13 RP1-179N16.4 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta HGNC:6875|MIM:602899|Ensembl:ENSG00000156711|HPRD:09113|Vega:OTTHUMG00000014587 6 6p21.31 mitogen-activated protein kinase 13 protein-coding MAPK13 mitogen-activated protein kinase 13 O MAP kinase 13|MAP kinase p38 delta|mitogen-activated protein kinase p38 delta|stress-activated protein kinase 4 20121230 -9606 5604 MAP2K1 - MAPKK1|MEK1|MKK1|PRKMK1 HGNC:6840|MIM:176872|Ensembl:ENSG00000169032|HPRD:01469|Vega:OTTHUMG00000133196 15 15q22.1-q22.33 mitogen-activated protein kinase kinase 1 protein-coding MAP2K1 mitogen-activated protein kinase kinase 1 O ERK activator kinase 1|MAP kinase kinase 1|MAPK/ERK kinase 1|MAPKK 1|MEK 1|dual specificity mitogen-activated protein kinase kinase 1|protein kinase, mitogen-activated, kinase 1 (MAP kinase kinase 1) 20121230 -9606 5605 MAP2K2 - MAPKK2|MEK2|MKK2|PRKMK2 HGNC:6842|MIM:601263|Ensembl:ENSG00000126934|HPRD:03164 19 19p13.3 mitogen-activated protein kinase kinase 2 protein-coding MAP2K2 mitogen-activated protein kinase kinase 2 O ERK activator kinase 2|MAP kinase kinase 2|MAPK/ERK kinase 2|dual specificity mitogen-activated protein kinase kinase 2|mitogen-activated protein kinase kinase 2, p45 20121230 -9606 5606 MAP2K3 - MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 HGNC:6843|MIM:602315|Ensembl:ENSG00000034152|HPRD:03816|Vega:OTTHUMG00000134322 17 17q11.2 mitogen-activated protein kinase kinase 3 protein-coding MAP2K3 mitogen-activated protein kinase kinase 3 O MAP kinase kinase 3|MAPK/ERK kinase 3|MAPKK 3|MEK 3|SAPK kinase 2|dual specificity mitogen-activated protein kinase kinase 3|stress-activated protein kinase kinase 2 20121230 -9606 5607 MAP2K5 - HsT17454|MAPKK5|MEK5|PRKMK5 HGNC:6845|MIM:602520|Ensembl:ENSG00000137764|HPRD:03951|Vega:OTTHUMG00000133264 15 15q23 mitogen-activated protein kinase kinase 5 protein-coding MAP2K5 mitogen-activated protein kinase kinase 5 O MAP kinase kinase 5|MAP kinase kinase MEK5b|MAPK/ERK kinase 5|MAPKK 5|MEK 5|dual specificity mitogen-activated protein kinase kinase 5 20121230 -9606 5608 MAP2K6 - MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 HGNC:6846|MIM:601254|Ensembl:ENSG00000108984|HPRD:03155|Vega:OTTHUMG00000180311 17 17q24.3 mitogen-activated protein kinase kinase 6 protein-coding MAP2K6 mitogen-activated protein kinase kinase 6 O MAPK/ERK kinase 6|MAPKK 6|MEK 6|SAPK kinase 3|dual specificity mitogen-activated protein kinase kinase 6|protein kinase, mitogen-activated, kinase 6 (MAP kinase kinase 6)|stress-activated protein kinase kinase 3 20121230 -9606 5609 MAP2K7 - Jnkk2|MAPKK7|MKK7|PRKMK7|SAPKK-4|SAPKK4 HGNC:6847|MIM:603014|Ensembl:ENSG00000076984|Vega:OTTHUMG00000137368 19 19p13.3-p13.2 mitogen-activated protein kinase kinase 7 protein-coding MAP2K7 mitogen-activated protein kinase kinase 7 O JNK-activating kinase 2|JNKK 2|MAP kinase kinase 7|MAPK/ERK kinase 7|MAPKK 7|MEK 7|SAPK kinase 4|c-Jun N-terminal kinase kinase 2|dual specificity mitogen-activated protein kinase kinase 7|stress-activated protein kinase kinase 4 20121230 -9606 5610 EIF2AK2 - EIF2AK1|PKR|PRKR HGNC:9437|MIM:176871|Ensembl:ENSG00000055332|HPRD:01468|Vega:OTTHUMG00000100962 2 2p22-p21 eukaryotic translation initiation factor 2-alpha kinase 2 protein-coding EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 O P1/eIF-2A protein kinase|double stranded RNA activated protein kinase|eIF-2A protein kinase 2|interferon-induced, double-stranded RNA-activated protein kinase|interferon-inducible elF2alpha kinase|p68 kinase|protein kinase, interferon-inducible double stranded RNA dependent|tyrosine-protein kinase EIF2AK2 20121230 -9606 5611 DNAJC3 - ERdj6|HP58|P58|P58IPK|PRKRI HGNC:9439|MIM:601184|Ensembl:ENSG00000102580|HPRD:03114|Vega:OTTHUMG00000017227 13 13q32.1 DnaJ (Hsp40) homolog, subfamily C, member 3 protein-coding DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 O dnaJ homolog subfamily C member 3|endoplasmic reticulum DnaJ protein 6|interferon-induced, double-stranded RNA-activated protein kinase inhibitor|protein kinase inhibitor of 58 kDa|protein kinase inhibitor p58|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor 20121230 -9606 5612 PRKRIR - DAP4|P52rIPK|THAP0 HGNC:9440|MIM:607374|Ensembl:ENSG00000137492|HPRD:09567|Vega:OTTHUMG00000165280 11 11q13.5 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) protein-coding PRKRIR protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) O 52 kDa repressor of the inhibitor of the protein kinase|58 kDa interferon-induced protein kinase-interacting protein|THAP domain-containing protein 0|death-associated protein 4|inhibitor of protein kinase PKR|p58IPK-interacting protein 20121230 -9606 5613 PRKX - PKX1 HGNC:9441|MIM:300083|Ensembl:ENSG00000183943|HPRD:02097|Vega:OTTHUMG00000021087 X Xp22.3 protein kinase, X-linked protein-coding PRKX protein kinase, X-linked O cAMP-dependent protein kinase catalytic subunit PRKX|protein kinase PKX1|protein kinase X|protein kinase X-linked|serine/threonine-protein kinase PRKX 20121230 -9606 5615 PRKXP2 - - HGNC:9443 X Xq13.1 protein kinase, X-linked, pseudogene 2 pseudo PRKXP2 protein kinase, X-linked, pseudogene 2 O - 20121230 -9606 5616 PRKY - PRKXP3|PRKYP HGNC:9444|MIM:400008|HPRD:08949 Y Yp11.2 protein kinase, Y-linked, pseudogene pseudo PRKY protein kinase, Y-linked, pseudogene O - 20121230 -9606 5617 PRL RP3-404K8.1 - HGNC:9445|MIM:176760|Ensembl:ENSG00000172179|HPRD:07180|Vega:OTTHUMG00000016111 6 6p22.2-p21.3 prolactin protein-coding PRL prolactin O decidual prolactin 20121230 -9606 5618 PRLR - hPRLrI HGNC:9446|MIM:176761|Ensembl:ENSG00000113494|HPRD:01457|Vega:OTTHUMG00000090789 5 5p13.2 prolactin receptor protein-coding PRLR prolactin receptor O PRL-R|hPRL receptor|secreted prolactin binding protein 20121230 -9606 5619 PRM1 - CT94.1|P1 HGNC:9447|MIM:182880|Ensembl:ENSG00000175646|HPRD:01688|Vega:OTTHUMG00000090521 16 16p13.2 protamine 1 protein-coding PRM1 protamine 1 O cancer/testis antigen family 94, member 1|cysteine-rich protamine|sperm protamine P1|testis specific protamine 1 20121230 -9606 5620 PRM2 - CT94.2 HGNC:9448|MIM:182890|Ensembl:ENSG00000122304|HPRD:01691|Vega:OTTHUMG00000172317 16 16p13.2 protamine 2 protein-coding PRM2 protamine 2 O cancer/testis antigen family 94, member 2|protamine-2|sperm histone P2|sperm protamine P2 20121230 -9606 5621 PRNP RP5-1068H6.2 ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 HGNC:9449|MIM:176640|Ensembl:ENSG00000171867|HPRD:01453|Vega:OTTHUMG00000031786 20 20p13 prion protein protein-coding PRNP prion protein O CD230 antigen|major prion protein|prion-related protein 20121230 -9606 5623 PSPN - PSP HGNC:9579|MIM:602921|Ensembl:ENSG00000125650|HPRD:04230 19 19p13.3 persephin protein-coding PSPN persephin O - 20121230 -9606 5624 PROC - APC|PC|PROC1|THPH3|THPH4 HGNC:9451|MIM:612283|Ensembl:ENSG00000115718|HPRD:01466|Vega:OTTHUMG00000131528 2 2q13-q14 protein C (inactivator of coagulation factors Va and VIIIa) protein-coding PROC protein C (inactivator of coagulation factors Va and VIIIa) O anticoagulant protein C|autoprothrombin IIA|blood coagulation factor XIV|vitamin K-dependent protein C 20121230 -9606 5625 PRODH - HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6 HGNC:9453|MIM:606810|Ensembl:ENSG00000100033|HPRD:08433|Vega:OTTHUMG00000150163 22 22q11.21 proline dehydrogenase (oxidase) 1 protein-coding PRODH proline dehydrogenase (oxidase) 1 O p53-induced gene 6 protein|proline dehydrogenase 1, mitochondrial|proline oxidase 2|proline oxidase, mitochondrial|tumor protein p53 inducible protein 6 20121230 -9606 5626 PROP1 - CPHD2|PROP-1 HGNC:9455|MIM:601538|Ensembl:ENSG00000175325|HPRD:03325|Vega:OTTHUMG00000130887 5 5q35.3 PROP paired-like homeobox 1 protein-coding PROP1 PROP paired-like homeobox 1 O homeobox protein prophet of Pit-1|pituitary-specific homeodomain factor|prophet of Pit1, paired-like homeodomain transcription factor 20121230 -9606 5627 PROS1 - PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 HGNC:9456|MIM:176880|Ensembl:ENSG00000184500|HPRD:01473|Vega:OTTHUMG00000150354 3 3q11.2 protein S (alpha) protein-coding PROS1 protein S (alpha) O protein Sa|vitamin K-dependent plasma protein S|vitamin K-dependent protein S 20121230 -9606 5628 PROSP - PROS2 HGNC:9458 3 3p21-cen protein S pseudogene (beta) pseudo PROSP protein S pseudogene (beta) O - 20121230 -9606 5629 PROX1 - - HGNC:9459|MIM:601546|Ensembl:ENSG00000117707|HPRD:03330|Vega:OTTHUMG00000036946 1 1q41 prospero homeobox 1 protein-coding PROX1 prospero homeobox 1 O homeobox prospero-like protein PROX1|prospero homeobox protein 1|prospero-related homeobox 1 20121230 -9606 5630 PRPH - NEF4|PRPH1 HGNC:9461|MIM:170710|Ensembl:ENSG00000135406|HPRD:01365|Vega:OTTHUMG00000167140 12 12q12-q13 peripherin protein-coding PRPH peripherin O neurofilament 4 (57kD) 20121230 -9606 5631 PRPS1 RP11-540N4.1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI HGNC:9462|MIM:304500|MIM:311850|Ensembl:ENSG00000147224|HPRD:02413|Vega:OTTHUMG00000022167 X Xq21.32-q24 phosphoribosyl pyrophosphate synthetase 1 protein-coding PRPS1 phosphoribosyl pyrophosphate synthetase 1 O dJ1070B1.2 (phosphoribosyl pyrophosphate synthetase 1)|deafness 2, perceptive, congenital|deafness, X-linked 2, perceptive, congenital|phosphoribosyl pyrophosphate synthase I|ribose-phosphate diphosphokinase 1|ribose-phosphate pyrophosphokinase 1 20121230 -9606 5634 PRPS2 - PRSII HGNC:9465|MIM:311860|Ensembl:ENSG00000101911|HPRD:02414|Vega:OTTHUMG00000021139 X Xp22.2 phosphoribosyl pyrophosphate synthetase 2 protein-coding PRPS2 phosphoribosyl pyrophosphate synthetase 2 O PPRibP synthetase|PRS-II|phosphoribosyl pyrophosphate synthase II|ribose-phosphate diphosphokinase 2|ribose-phosphate pyrophosphokinase 2 20121230 -9606 5635 PRPSAP1 - PAP39 HGNC:9466|MIM:601249|Ensembl:ENSG00000161542|HPRD:03151|Vega:OTTHUMG00000155969 17 17q24-q25 phosphoribosyl pyrophosphate synthetase-associated protein 1 protein-coding PRPSAP1 phosphoribosyl pyrophosphate synthetase-associated protein 1 O 39 kDa phosphoribosypyrophosphate synthase-associated protein|PRPP synthase-associated protein 1|phosphoribosyl pyrophosphate synthase-associated protein 1 20121230 -9606 5636 PRPSAP2 - PAP41 HGNC:9467|MIM:603762|Ensembl:ENSG00000141127|HPRD:04789|Vega:OTTHUMG00000059406 17 17p11.2-p12 phosphoribosyl pyrophosphate synthetase-associated protein 2 protein-coding PRPSAP2 phosphoribosyl pyrophosphate synthetase-associated protein 2 O 41 kDa phosphoribosypyrophosphate synthetase-associated protein|PRPP synthase-associated protein 2|phosphoribosyl pyrophosphate synthase-associated protein 2 20121230 -9606 5638 PRRG1 - PRGP1 HGNC:9469|MIM:604428|Ensembl:ENSG00000130962|HPRD:05113|Vega:OTTHUMG00000021360 X Xp21.1 proline rich Gla (G-carboxyglutamic acid) 1 protein-coding PRRG1 proline rich Gla (G-carboxyglutamic acid) 1 O proline-rich Gla (G-carboxyglutamic acid) polypeptide 1|transmembrane gamma-carboxyglutamic acid protein 1 20121230 -9606 5639 PRRG2 - PRGP2 HGNC:9470|MIM:604429|Ensembl:ENSG00000126460|HPRD:09189 19 19q13.33 proline rich Gla (G-carboxyglutamic acid) 2 protein-coding PRRG2 proline rich Gla (G-carboxyglutamic acid) 2 O proline-rich Gla (G-carboxglutamic acid) polypeptide 2|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2|proline-rich Gla protein 2|proline-rich gamma-carboxyglutamic acid protein 2|transmembrane gamma-carboxyglutamic acid protein 2 20121230 -9606 5640 PRS - MRXS2 HGNC:9471|MIM:309610 X Xp21-p11 Prieto X-linked mental retardation syndrome unknown PRS Prieto X-linked mental retardation syndrome O - 20120622 -9606 5641 LGMN - AEP|LGMN1|PRSC1 HGNC:9472|MIM:602620|Ensembl:ENSG00000100600|HPRD:04017|Vega:OTTHUMG00000171199 14 14q32.1 legumain protein-coding LGMN legumain O asparaginyl endopeptidase|cysteine protease 1|protease, cysteine 1|protease, cysteine, 1 (legumain) 20121230 -9606 5643 PRSM2 - - HGNC:9474 - - protease, metallo, 2 protein-coding PRSM2 protease, metallo, 2 O - 20080828 -9606 5644 PRSS1 - TRP1|TRY1|TRY4|TRYP1 HGNC:9475|MIM:276000|Ensembl:ENSG00000204983|HPRD:02039|Vega:OTTHUMG00000158923 7 7q34 protease, serine, 1 (trypsin 1) protein-coding PRSS1 protease, serine, 1 (trypsin 1) O beta-trypsin|cationic trypsinogen|digestive zymogen|nonfunctional trypsin 1|trypsin-1|trypsinogen 1|trypsinogen A 20121230 -9606 5645 PRSS2 - TRY2|TRY8|TRYP2 HGNC:9483|MIM:601564|HPRD:03335 7 7q34 protease, serine, 2 (trypsin 2) protein-coding PRSS2 protease, serine, 2 (trypsin 2) O anionic trypsinogen|protease serine 2 preproprotein|protease, serine, 2, preproprotein|serine protease 2|trypsin 2|trypsin II|trypsin-2|trypsinogen 2 20121230 -9606 5646 PRSS3 RP11-176F3.3 MTG|PRSS4|T9|TRY3|TRY4 HGNC:9486|MIM:613578|Ensembl:ENSG00000010438|HPRD:06685|Vega:OTTHUMG00000019798 9 9p11.2 protease, serine, 3 protein-coding PRSS3 protease, serine, 3 O brain trypsinogen|mesotrypsin|mesotrypsinogen|pancreatic trypsinogen III|protease, serine, 4 (trypsin 4, brain)|trypsin III|trypsin IV|trypsin-3|trypsinogen 4|trypsinogen 5|trypsinogen IV 20121230 -9606 5648 MASP1 - 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF HGNC:6901|MIM:600521|Ensembl:ENSG00000127241|HPRD:02749|Vega:OTTHUMG00000156461 3 3q27-q28 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) protein-coding MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) O Ra-reactive factor serine protease p100|complement factor MASP-3|complement-activating component of Ra-reactive factor|mannan-binding lectin serine protease 1|mannose-binding lectin-associated serine protease 1|mannose-binding protein-associated serine protease|serine protease 5 20121230 -9606 5649 RELN - LIS2|PRO1598|RL HGNC:9957|MIM:600514|Ensembl:ENSG00000189056|HPRD:02742|Vega:OTTHUMG00000157247 7 7q22 reelin protein-coding RELN reelin O - 20121230 -9606 5650 KLK7 - PRSS6|SCCE|hK7 HGNC:6368|MIM:604438|Ensembl:ENSG00000169035|HPRD:05115 19 19q13.41 kallikrein-related peptidase 7 protein-coding KLK7 kallikrein-related peptidase 7 O kallikrein 7 (chymotryptic, stratum corneum)|kallikrein-7|serine protease 6|signal protein|stratum corneum chymotryptic enzyme 20121230 -9606 5651 TMPRSS15 - ENTK|PRSS7 HGNC:9490|MIM:606635|Ensembl:ENSG00000154646|HPRD:05972|Vega:OTTHUMG00000074518 21 21q21.1 transmembrane protease, serine 15 protein-coding TMPRSS15 transmembrane protease, serine 15 O enterokinase|enteropeptidase|protease, serine, 7 (enterokinase)|serine protease 7 20121230 -9606 5652 PRSS8 - CAP1|PROSTASIN HGNC:9491|MIM:600823|Ensembl:ENSG00000052344|HPRD:02895|Vega:OTTHUMG00000176750 16 16p11.2 protease, serine, 8 protein-coding PRSS8 protease, serine, 8 O channel-activating protease 1|prostasin|serine protease 8 20121230 -9606 5653 KLK6 - Bssp|Klk7|PRSS18|PRSS9|SP59|hK6 HGNC:6367|MIM:602652|Ensembl:ENSG00000167755|HPRD:04037 19 19q13.3 kallikrein-related peptidase 6 protein-coding KLK6 kallikrein-related peptidase 6 O kallikrein-6|neurosin|protease M|serine protease 18|serine protease 9|zyme 20121230 -9606 5654 HTRA1 - ARMD7|CARASIL|HtrA|L56|ORF480|PRSS11 HGNC:9476|MIM:602194|Ensembl:ENSG00000166033|HPRD:03725|Vega:OTTHUMG00000019186 10 10q26.3 HtrA serine peptidase 1 protein-coding HTRA1 HtrA serine peptidase 1 O IGFBP5-protease|high-temperature requirement A serine peptidase 1|protease, serine, 11 (IGF binding)|serine protease HTRA1 20121230 -9606 5655 KLK10 - NES1|PRSSL1 HGNC:6358|MIM:602673|Ensembl:ENSG00000129451|HPRD:04054 19 19q13 kallikrein-related peptidase 10 protein-coding KLK10 kallikrein-related peptidase 10 O breast normal epithelial cell associated serine protease|kallikrein 10|kallikrein-10|normal epithelial cell-specific 1|protease serine-like 1|protease, serine-like, 1 20121230 -9606 5657 PRTN3 - ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3 HGNC:9495|MIM:177020|Ensembl:ENSG00000196415|HPRD:01512|Vega:OTTHUMG00000181838 19 19p13.3 proteinase 3 protein-coding PRTN3 proteinase 3 O C-ANCA antigen|Wegener granulomatosis autoantigen|azurophil granule protein 7|leukocyte proteinase 3|myeloblastin|neutrophil proteinase 4|serine proteinase, neutrophil|wegener autoantigen 20121230 -9606 5660 PSAP - GLBA|SAP1 HGNC:9498|MIM:176801|Ensembl:ENSG00000197746|HPRD:01460|Vega:OTTHUMG00000018429 10 10q21-q22 prosaposin protein-coding PSAP prosaposin O proactivator polypeptide|sphingolipid activator protein-1 20121230 -9606 5661 PSBP1 - - HGNC:9499 - - prostatic steroid binding protein 1 protein-coding PSBP1 prostatic steroid binding protein 1 O prostatic steroid-binding protein 1 20080828 -9606 5662 PSD RP11-18I14.2 EFA6|EFA6A|PSD1|TYL HGNC:9507|MIM:602327|Ensembl:ENSG00000059915|HPRD:09085|Vega:OTTHUMG00000018954 10 10q24 pleckstrin and Sec7 domain containing protein-coding PSD pleckstrin and Sec7 domain containing O PH and SEC7 domain-containing protein 1|exchange factor for ARF6|pleckstrin homology and SEC7 domain-containing protein 1|pleckstrin-Sec7 domains-containing 20121230 -9606 5663 PSEN1 - AD3|FAD|PS-1|PS1|S182 HGNC:9508|MIM:104311|Ensembl:ENSG00000080815|HPRD:00087|Vega:OTTHUMG00000141279 14 14q24.3 presenilin 1 protein-coding PSEN1 presenilin 1 O presenilin-1 20121230 -9606 5664 PSEN2 - AD3L|AD4|CMD1V|PS2|STM2 HGNC:9509|MIM:600759|Ensembl:ENSG00000143801|HPRD:02860|Vega:OTTHUMG00000037563 1 1q31-q42 presenilin 2 (Alzheimer disease 4) protein-coding PSEN2 presenilin 2 (Alzheimer disease 4) O AD3LP|AD5|E5-1|PS-2|STM-2|presenilin-2 20121230 -9606 5669 PSG1 - B1G1|CD66f|DHFRP2|FL-NCA-1/2|PBG1|PS-beta-C/D|PS-beta-G-1|PSBG-1|PSBG1|PSG95|PSGGA|PSGIIA|SP1 HGNC:9514|MIM:176390|Ensembl:ENSG00000231924|HPRD:01449|Vega:OTTHUMG00000151123 19 19q13.2 pregnancy specific beta-1-glycoprotein 1 protein-coding PSG1 pregnancy specific beta-1-glycoprotein 1 O CD66 antigen-like family member F|fetal liver non-specific cross-reactive antigen 1/2|pregnancy-specific B-1 glycoprotein|pregnancy-specific beta-1 glycoprotein C/D|pregnancy-specific beta-1-glycoprotein 1|pregnancy-specific glycoprotein 1 20121230 -9606 5670 PSG2 - CEA|PSBG2|PSG1 HGNC:9519|MIM:176391|Ensembl:ENSG00000242221|HPRD:08891|Vega:OTTHUMG00000151547 19 19q13.1-q13.2 pregnancy specific beta-1-glycoprotein 2 protein-coding PSG2 pregnancy specific beta-1-glycoprotein 2 O PS-beta-E|PS-beta-G-2|PSBG-2|carcinoembryonic antigen SG8|pregnancy-specific beta-1 glycoprotein E|pregnancy-specific beta-1-glycoprotein 2|pregnancy-specific beta-1-glycoprotein 7|pregnancy-specific beta-1-glycoprotein-2|pregnancy-specific glycoprotein 2 20121230 -9606 5671 PSG3 - - HGNC:9520|MIM:176392|Ensembl:ENSG00000221826|HPRD:08892|Vega:OTTHUMG00000151120 19 19q13.2 pregnancy specific beta-1-glycoprotein 3 protein-coding PSG3 pregnancy specific beta-1-glycoprotein 3 O PS-beta-G-3|PSBG-3|carcinoembryonic antigen SG5|pregnancy-specific beta-1-glycoprotein 3|pregnancy-specific glycoprotein 3 20121230 -9606 5672 PSG4 - PSG9 HGNC:9521|MIM:176393|Ensembl:ENSG00000243137|HPRD:08893|Vega:OTTHUMG00000151544 19 19q13.2 pregnancy specific beta-1-glycoprotein 4 protein-coding PSG4 pregnancy specific beta-1-glycoprotein 4 O PS-beta-G-4|PS-beta-G-9|PSBG-4|PSBG-9|Pregnancy-specific beta-1-glycoprotein-4|pregnancy-specific beta-1-glycoprotein 4|pregnancy-specific beta-1-glycoprotein 9|pregnancy-specific glycoprotein 4|pregnancy-specific glycoprotein 9 20121230 -9606 5673 PSG5 - FL-NCA-3|PSG HGNC:9522|MIM:176394|Ensembl:ENSG00000204941|HPRD:08894|Vega:OTTHUMG00000151539 19 19q13.2 pregnancy specific beta-1-glycoprotein 5 protein-coding PSG5 pregnancy specific beta-1-glycoprotein 5 O PS-beta-G-5|PSBG-5|Pregnancy-specific beta-1-glycoprotein-5|fetal liver non-specific cross-reactive antigen 3|pregnancy-specific beta 1 glycoprotein|pregnancy-specific beta-1 glycoprotein|pregnancy-specific beta-1-glycoprotein 5|pregnancy-specific glycoprotein 5 20121230 -9606 5675 PSG6 - PSBG-10|PSBG-12|PSBG-6|PSG10|PSGGB HGNC:9523|MIM:176395|Ensembl:ENSG00000170848|HPRD:08895|Vega:OTTHUMG00000151127 19 19q13.2 pregnancy specific beta-1-glycoprotein 6 protein-coding PSG6 pregnancy specific beta-1-glycoprotein 6 O PS-beta-G-10|PS-beta-G-12|PS-beta-G-6|pregnancy-specific beta-1-glycoprotein 10|pregnancy-specific beta-1-glycoprotein 12|pregnancy-specific beta-1-glycoprotein 6 20121230 -9606 5676 PSG7 - PSBG-7|PSG1|PSGGA HGNC:9524|MIM:176396|Ensembl:ENSG00000221878|HPRD:08896|Vega:OTTHUMG00000151125 19 19q13.2 pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene) protein-coding PSG7 pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene) O PS-beta-G-7|pregnancy-specific glycoprotein 7|putative pregnancy-specific beta-1-glycoprotein 7 20121230 -9606 5678 PSG9 - PS34|PSBG-11|PSBG-9|PSG11|PSGII HGNC:9526|MIM:176398|Ensembl:ENSG00000183668|HPRD:08897|Vega:OTTHUMG00000151541 19 19q13.2 pregnancy specific beta-1-glycoprotein 9 protein-coding PSG9 pregnancy specific beta-1-glycoprotein 9 O PS-beta-B|PS-beta-G-11|PS-beta-G-9|pregnancy specific beta-1-glycoprotein 11|pregnancy-specific beta-1 glycoprotein B|pregnancy-specific beta-1-glycoprotein 9 20121230 -9606 5680 PSG11 - PSBG-11|PSBG-13|PSG13|PSG14 HGNC:9516|MIM:176401|Ensembl:ENSG00000243130|HPRD:08898|Vega:OTTHUMG00000151546 19 19q13.2 pregnancy specific beta-1-glycoprotein 11 protein-coding PSG11 pregnancy specific beta-1-glycoprotein 11 O PS-beta-G-11|PS-beta-G-13|pregnancy-specific beta-1-glycoprotein 11|pregnancy-specific beta-1-glycoprotein 13 20121230 -9606 5681 PSKH1 - - HGNC:9529|MIM:177015|Ensembl:ENSG00000159792|HPRD:01511|Vega:OTTHUMG00000137548 16 16q22.1 protein serine kinase H1 protein-coding PSKH1 protein serine kinase H1 O PSK-H1|serine/threonine-protein kinase H1 20121230 -9606 5682 PSMA1 - HC2|NU|PROS30 HGNC:9530|MIM:602854|Ensembl:ENSG00000129084|Ensembl:ENSG00000256206|HPRD:04170|Vega:OTTHUMG00000165825|Vega:OTTHUMG00000168126 11 11p15.1 proteasome (prosome, macropain) subunit, alpha type, 1 protein-coding PSMA1 proteasome (prosome, macropain) subunit, alpha type, 1 O 30 kDa prosomal protein|PROS-30|macropain subunit C2|macropain subunit nu|multicatalytic endopeptidase complex subunit C2|proteasome component C2|proteasome nu chain|proteasome subunit alpha type-1|proteasome subunit nu|proteasome subunit, alpha-type, 1|protein P30-33K 20121230 -9606 5683 PSMA2 - HC3|MU|PMSA2|PSC2 HGNC:9531|MIM:176842|Ensembl:ENSG00000106588|Ensembl:ENSG00000256646|HPRD:08907|Vega:OTTHUMG00000023916|Vega:OTTHUMG00000168259 7 7p13 proteasome (prosome, macropain) subunit, alpha type, 2 protein-coding PSMA2 proteasome (prosome, macropain) subunit, alpha type, 2 O macropain subunit C3|multicatalytic endopeptidase complex subunit C3|proteasome component C3|proteasome subunit HC3|proteasome subunit alpha type-2 20121230 -9606 5684 PSMA3 - HC8|PSC3 HGNC:9532|MIM:176843|Ensembl:ENSG00000100567|HPRD:01463|Vega:OTTHUMG00000140319 14 14q23 proteasome (prosome, macropain) subunit, alpha type, 3 protein-coding PSMA3 proteasome (prosome, macropain) subunit, alpha type, 3 O macropain subunit C8|multicatalytic endopeptidase complex subunit C8|proteasome component C8|proteasome subunit C8|proteasome subunit alpha type-3 20121230 -9606 5685 PSMA4 - HC9|HsT17706|PSC9 HGNC:9533|MIM:176846|Ensembl:ENSG00000041357|HPRD:10168|Vega:OTTHUMG00000143859 15 15q25.1 proteasome (prosome, macropain) subunit, alpha type, 4 protein-coding PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 O macropain subunit C9|multicatalytic endopeptidase complex subunit C9|proteasome component C9|proteasome subunit HC9|proteasome subunit L|proteasome subunit alpha type-4 20121230 -9606 5686 PSMA5 - PSC5|ZETA HGNC:9534|MIM:176844|Ensembl:ENSG00000143106|HPRD:01464|Vega:OTTHUMG00000012001 1 1p13 proteasome (prosome, macropain) subunit, alpha type, 5 protein-coding PSMA5 proteasome (prosome, macropain) subunit, alpha type, 5 O macropain subunit zeta|macropain zeta chain|multicatalytic endopeptidase complex zeta chain|proteasome alpha 5 subunit|proteasome component 5|proteasome subunit alpha type-5|proteasome subunit zeta|proteasome zeta chain 20121230 -9606 5687 PSMA6 - IOTA|PROS27|p27K HGNC:9535|MIM:602855|Ensembl:ENSG00000100902|HPRD:04171|Vega:OTTHUMG00000140221 14 14q13 proteasome (prosome, macropain) subunit, alpha type, 6 protein-coding PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6 O 27 kDa prosomal protein|PROS-27|macropain iota chain|macropain subunit iota|multicatalytic endopeptidase complex iota chain|prosomal P27K protein|proteasome iota chain|proteasome subunit alpha type-6|proteasome subunit iota 20121230 -9606 5688 PSMA7 RP5-1005F21.4 C6|HSPC|RC6-1|XAPC7 HGNC:9536|MIM:606607|Ensembl:ENSG00000101182|HPRD:05967|Vega:OTTHUMG00000032895 20 20q13.33 proteasome (prosome, macropain) subunit, alpha type, 7 protein-coding PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 O proteasome subunit RC6-1|proteasome subunit XAPC7|proteasome subunit alpha 4|proteasome subunit alpha type-7 20121230 -9606 5689 PSMB1 - HC5|PMSB1|PSC5 HGNC:9537|MIM:602017|Ensembl:ENSG00000008018|HPRD:03603|Vega:OTTHUMG00000016087 6 6q27 proteasome (prosome, macropain) subunit, beta type, 1 protein-coding PSMB1 proteasome (prosome, macropain) subunit, beta type, 1 O macropain subunit C5|multicatalytic endopeptidase complex subunit C5|proteasome beta 1 subunit|proteasome component C5|proteasome gamma chain|proteasome subunit HC5|proteasome subunit beta type-1 20121230 -9606 5690 PSMB2 RP5-983H21.1 HC7-I HGNC:9539|MIM:602175|Ensembl:ENSG00000126067|HPRD:03708|Vega:OTTHUMG00000004169 1 1p34.2 proteasome (prosome, macropain) subunit, beta type, 2 protein-coding PSMB2 proteasome (prosome, macropain) subunit, beta type, 2 O macropain subunit C7-I|multicatalytic endopeptidase complex subunit C7-1|multicatalytic endopeptidase complex subunit C7-I|proteasome beta 2 subunit|proteasome component C7-I|proteasome subunit beta type-2|proteasome subunit, beta type, 2 20121230 -9606 5691 PSMB3 - HC10-II HGNC:9540|MIM:602176|Ensembl:ENSG00000108294|HPRD:03709|Vega:OTTHUMG00000133124 17 17q12 proteasome (prosome, macropain) subunit, beta type, 3 protein-coding PSMB3 proteasome (prosome, macropain) subunit, beta type, 3 O proteasome chain 13|proteasome component C10-II|proteasome subunit beta type-3|proteasome theta chain 20121230 -9606 5692 PSMB4 - HN3|HsN3|PROS-26|PROS26 HGNC:9541|MIM:602177|Ensembl:ENSG00000159377|HPRD:03710|Vega:OTTHUMG00000012494 1 1q21 proteasome (prosome, macropain) subunit, beta type, 4 protein-coding PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 O 26 kDa prosomal protein|hsBPROS26|macropain beta chain|multicatalytic endopeptidase complex beta chain|proteasome beta chain|proteasome chain 3|proteasome subunit HsN3|proteasome subunit beta type-4|proteasome subunit, beta type, 4 20121230 -9606 5693 PSMB5 - LMPX|MB1|X HGNC:9542|MIM:600306|Ensembl:ENSG00000100804|HPRD:02629|Vega:OTTHUMG00000028713 14 14q11.2 proteasome (prosome, macropain) subunit, beta type, 5 protein-coding PSMB5 proteasome (prosome, macropain) subunit, beta type, 5 O PSX large multifunctional protease X|macropain epsilon chain|multicatalytic endopeptidase complex epsilon chain|proteasome beta 5 subunit|proteasome catalytic subunit 3|proteasome chain 6|proteasome epsilon chain|proteasome subunit MB1|proteasome subunit X|proteasome subunit beta type-5|proteasome subunit, beta type, 5 20121230 -9606 5694 PSMB6 - DELTA|LMPY|Y HGNC:9543|MIM:600307|Ensembl:ENSG00000142507|HPRD:02630|Vega:OTTHUMG00000090777 17 17p13 proteasome (prosome, macropain) subunit, beta type, 6 protein-coding PSMB6 proteasome (prosome, macropain) subunit, beta type, 6 O PSY large multifunctional protease Y|macropain delta chain|multicatalytic endopeptidase complex delta chain|proteasome catalytic subunit 1|proteasome delta chain|proteasome subunit Y|proteasome subunit beta type-6|proteasome subunit delta 20121230 -9606 5695 PSMB7 RP11-101K10.7 Z HGNC:9544|MIM:604030|Ensembl:ENSG00000136930|HPRD:04940|Vega:OTTHUMG00000021042 9 9q34.11-q34.12 proteasome (prosome, macropain) subunit, beta type, 7 protein-coding PSMB7 proteasome (prosome, macropain) subunit, beta type, 7 O macropain chain Z|multicatalytic endopeptidase complex chain Z|proteasome catalytic subunit 2|proteasome subunit Z|proteasome subunit alpha|proteasome subunit beta type-7 20121230 -9606 5696 PSMB8 DAAP-57C1.3 ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PSMB5i|RING10 HGNC:9545|MIM:177046|Ensembl:ENSG00000204264|HPRD:01515|Vega:OTTHUMG00000031285 6 6p21.3 proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) protein-coding PSMB8 proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) O low molecular mass protein 7|low molecular weight protein 7|macropain subunit C13|multicatalytic endopeptidase complex subunit C13|protease component C13|proteasome catalytic subunit 3i|proteasome component C13|proteasome subunit Y2|proteasome subunit beta 5i|proteasome subunit beta type-8|proteasome-related gene 7|really interesting new gene 10 protein 20121230 -9606 5697 PYY - PYY-I|PYY1 HGNC:9748|MIM:600781|Ensembl:ENSG00000131096|HPRD:02869|Vega:OTTHUMG00000181801 17 17q21.1 peptide YY protein-coding PYY peptide YY O peptide tyrosine tyrosine 20121230 -9606 5698 PSMB9 DADB-223G19.3 LMP2|PSMB6i|RING12|beta1i HGNC:9546|MIM:177045|Ensembl:ENSG00000240065|HPRD:01514|Vega:OTTHUMG00000031287 6 6p21.3 proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2) protein-coding PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2) O low molecular mass protein 2|macropain chain 7|multicatalytic endopeptidase complex chain 7|proteasome catalytic subunit 1i|proteasome chain 7|proteasome subunit beta 6i|proteasome subunit beta type-9|proteasome subunit beta-1i|proteasome-related gene 2|really interesting new gene 12 protein 20121230 -9606 5699 PSMB10 - LMP10|MECL1|beta2i HGNC:9538|MIM:176847|Ensembl:ENSG00000205220|HPRD:01465|Vega:OTTHUMG00000137553 16 16q22.1 proteasome (prosome, macropain) subunit, beta type, 10 protein-coding PSMB10 proteasome (prosome, macropain) subunit, beta type, 10 O low molecular mass protein 10|macropain subunit MECl-1|multicatalytic endopeptidase complex subunit MECl-1|proteasome MECl-1|proteasome catalytic subunit 2i|proteasome subunit MECL1|proteasome subunit beta 7i|proteasome subunit beta type-10|proteasome subunit beta-2i 20121230 -9606 5700 PSMC1 - P26S4|S4|p56 HGNC:9547|MIM:602706|Ensembl:ENSG00000100764|HPRD:04084|Vega:OTTHUMG00000171019 14 14q32.11 proteasome (prosome, macropain) 26S subunit, ATPase, 1 protein-coding PSMC1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 O 26S protease regulatory subunit 4|26S proteasome AAA-ATPase subunit RPT2|proteasome 26S ATPase subunit 1|proteasome 26S subunit ATPase 1|proteasome 26S subunit, ATPase, 1 20121230 -9606 5701 PSMC2 - MSS1|Nbla10058|S7 HGNC:9548|MIM:154365|Ensembl:ENSG00000161057|HPRD:01105|Vega:OTTHUMG00000157206 7 7q22.1-q22.3 proteasome (prosome, macropain) 26S subunit, ATPase, 2 protein-coding PSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2 O 26S protease regulatory subunit 7|26S proteasome AAA-ATPase subunit RPT1|mammalian suppressor of sgv-1 of yeast|protease 26S subunit 7|proteasome 26S subunit ATPase 2|proteasome 26S subunit, ATPase, 2|putative protein product of Nbla10058 20121230 -9606 5702 PSMC3 - TBP1 HGNC:9549|MIM:186852|Ensembl:ENSG00000165916|HPRD:01733|Vega:OTTHUMG00000167692 11 11p11.2 proteasome (prosome, macropain) 26S subunit, ATPase, 3 protein-coding PSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3 O 26S protease regulatory subunit 6A|26S proteasome AAA-ATPase subunit RPT5|TBP-1|Tat-binding protein 1|human immunodeficiency virus tat transactivator binding protein-1|proteasome 26S subunit ATPase 3|proteasome subunit P50 20121230 -9606 5703 PSMC3P - - HGNC:9550 9 9p22.1 proteasome (prosome, macropain) 26S subunit, ATPase, 3 pseudogene pseudo PSMC3P proteasome (prosome, macropain) 26S subunit, ATPase, 3 pseudogene O - 20121230 -9606 5704 PSMC4 - MIP224|RPT3|S6|TBP-7|TBP7 HGNC:9551|MIM:602707|Ensembl:ENSG00000013275|HPRD:04085 19 19q13.11-q13.13 proteasome (prosome, macropain) 26S subunit, ATPase, 4 protein-coding PSMC4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 O 26S protease regulatory subunit 6B|26S proteasome AAA-ATPase subunit RPT3|MB67-interacting protein|Tat-binding protein 7|protease 26S subunit 6 20121230 -9606 5705 PSMC5 - S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG HGNC:9552|MIM:601681|Ensembl:ENSG00000087191|HPRD:03400|Vega:OTTHUMG00000179013 17 17q23.3 proteasome (prosome, macropain) 26S subunit, ATPase, 5 protein-coding PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 O 26S protease regulatory subunit 8|26S proteasome AAA-ATPase subunit RPT6|MSUG1 protein|Tat-binding protein homolog 10|proteasome 26S ATPase subunit 5|proteasome 26S subunit ATPase 5|proteasome subunit p45|thyroid hormone receptor-interacting protein 1|thyroid receptor interactor 1 20121230 -9606 5706 PSMC6 - CADP44|P44|SUG2|p42 HGNC:9553|MIM:602708|Ensembl:ENSG00000100519|HPRD:04086|Vega:OTTHUMG00000152333 14 14q22.1 proteasome (prosome, macropain) 26S subunit, ATPase, 6 protein-coding PSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6 O 26S protease regulatory subunit 10B|26S protease regulatory subunit S10B|26S proteasome AAA-ATPase subunit RPT4|conserved ATPase domain protein 44|proteasome 26S subunit ATPase 6|proteasome subunit p42 20121230 -9606 5707 PSMD1 - P112|Rpn2|S1 HGNC:9554|Ensembl:ENSG00000173692|HPRD:10169|Vega:OTTHUMG00000133223 2 2q37.1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 protein-coding PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 O 26S proteasome non-ATPase regulatory subunit 1|26S proteasome regulatory subunit RPN2|26S proteasome regulatory subunit S1|26S proteasome subunit p112 20121230 -9606 5708 PSMD2 - P97|Rpn1|S2|TRAP2 HGNC:9559|MIM:606223|Ensembl:ENSG00000175166|HPRD:05870|Vega:OTTHUMG00000156796 3 3q27.1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 protein-coding PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 O 26S proteasome non-ATPase regulatory subunit 2|26S proteasome regulatory subunit RPN1|26S proteasome regulatory subunit S2|26S proteasome subunit p97|55.11 protein|TNFR-associated protein 2|protein 55.11|tumor necrosis factor receptor-associated protein 2|tumor necrosis factor type 1 receptor-associated protein 2 20121230 -9606 5709 PSMD3 - P58|RPN3|S3|TSTA2 HGNC:9560|Ensembl:ENSG00000108344|HPRD:10170|Vega:OTTHUMG00000133251 17 17q21.1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 protein-coding PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 O 26S proteasome non-ATPase regulatory subunit 3|26S proteasome regulatory subunit RPN3|26S proteasome regulatory subunit S3|proteasome subunit p58|tissue specific transplantation antigen 2 20121230 -9606 5710 PSMD4 RP11-126K1.1 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 HGNC:9561|MIM:601648|Ensembl:ENSG00000159352|HPRD:03386|Vega:OTTHUMG00000012349 1 1q21.3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 protein-coding PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 O 26S proteasome non-ATPase regulatory subunit 4|26S proteasome regulatory subunit S5A|RPN10 homolog|S5a/antisecretory factor protein|angiocidin|antisecretory factor 1|multiubiquitin chain-binding protein 20121230 -9606 5711 PSMD5 RP11-27I1.5 S5B HGNC:9563|MIM:604452|Ensembl:ENSG00000095261|HPRD:05121|Vega:OTTHUMG00000020573 9 9q33.2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 protein-coding PSMD5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 O 26S protease subunit S5 basic|26S proteasome non-ATPase regulatory subunit 5|26S proteasome subunit S5B 20121230 -9606 5713 PSMD7 - MOV34|P40|Rpn8|S12 HGNC:9565|MIM:157970|Ensembl:ENSG00000103035|HPRD:01147|Vega:OTTHUMG00000137601 16 16q22.3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 protein-coding PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 O 26S proteasome non-ATPase regulatory subunit 7|26S proteasome regulatory subunit S12|26S proteasome regulatory subunit rpn8|Moloney leukemia virus-34 proviral integration|Mov34 homolog|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)|proteasome subunit p40 20121230 -9606 5714 PSMD8 - HIP6|HYPF|Nin1p|Rpn12|S14|p31 HGNC:9566|Ensembl:ENSG00000099341|HPRD:10171|Vega:OTTHUMG00000150691 19 19q13.2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 protein-coding PSMD8 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 O 26S proteasome non-ATPase regulatory subunit 8|26S proteasome regulatory subunit RPN12|26S proteasome regulatory subunit S14|26S proteasome regulatory subunit p31 20121230 -9606 5715 PSMD9 - Rpn4|p27 HGNC:9567|MIM:603146|Ensembl:ENSG00000110801|Ensembl:ENSG00000256950|HPRD:04394|Vega:OTTHUMG00000168945|Vega:OTTHUMG00000168946 12 12q24.31-q24.32 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 protein-coding PSMD9 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 O 26S proteasome non-ATPase regulatory subunit 9|26S proteasome regulatory subunit p27|homolog of rat Bridge 1|proteasome 26S non-ATPase regulatory subunit 9 20121230 -9606 5716 PSMD10 RP5-889N15.3 dJ889N15.2|p28|p28(GANK) HGNC:9555|MIM:603480|Ensembl:ENSG00000101843|HPRD:04594|Vega:OTTHUMG00000022177 X Xq22.3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 protein-coding PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 O 26S proteasome non-ATPase regulatory subunit 10|26S proteasome regulatory subunit p28|ankyrin repeat protein|gankyrin|hepatocellular carcinoma-associated protein p28-II 20121230 -9606 5717 PSMD11 - Rpn6|S9|p44.5 HGNC:9556|MIM:604449|Ensembl:ENSG00000108671|HPRD:05119|Vega:OTTHUMG00000132811 17 17q11.2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 protein-coding PSMD11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 O 26S proteasome non-ATPase regulatory subunit 11|26S proteasome regulatory subunit 9|26S proteasome regulatory subunit RPN6|26S proteasome regulatory subunit S9|26S proteasome regulatory subunit p44.5 20121230 -9606 5718 PSMD12 - Rpn5|p55 HGNC:9557|MIM:604450|Ensembl:ENSG00000197170|HPRD:05120|Vega:OTTHUMG00000140376 17 17q24.2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 protein-coding PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 O 26S proteasome non-ATPase regulatory subunit 12|26S proteasome regulatory subunit RPN5|26S proteasome regulatory subunit p55 20121230 -9606 5719 PSMD13 - HSPC027|Rpn9|S11|p40.5 HGNC:9558|MIM:603481|Ensembl:ENSG00000185627|HPRD:04595|Vega:OTTHUMG00000119072 11 11p15.5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 protein-coding PSMD13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 O 26S proteasome non-ATPase regulatory subunit 13|26S proteasome regulatory subunit RPN9|26S proteasome regulatory subunit S11|26S proteasome regulatory subunit p40.5|26S proteasome subunit p40.5 20121230 -9606 5720 PSME1 - IFI5111|PA28A|PA28alpha|REGalpha HGNC:9568|MIM:600654|Ensembl:ENSG00000092010|HPRD:02803|Vega:OTTHUMG00000028795 14 14q11.2 proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) protein-coding PSME1 proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) O 11S regulator complex alpha subunit|11S regulator complex subunit alpha|29-kD MCP activator subunit|IGUP I-5111|REG-alpha|activator of multicatalytic protease subunit 1|interferon gamma up-regulated I-5111 protein|interferon-gamma IEF SSP 5111|interferon-gamma-inducible protein 5111|proteasome activator 28 subunit alpha|proteasome activator complex subunit 1|proteasome activator subunit-1 20121230 -9606 5721 PSME2 - PA28B|PA28beta|REGbeta HGNC:9569|MIM:602161|Ensembl:ENSG00000100911|HPRD:03697|Vega:OTTHUMG00000028797 14 14q11.2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) protein-coding PSME2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) O 11S regulator complex beta subunit|11S regulator complex subunit beta|MCP activator, 31-kD subunit|REG-beta|activator of multicatalytic protease subunit 2|cell migration-inducing protein 22|proteasome activator 28 subunit beta|proteasome activator 28-beta|proteasome activator complex subunit 2|proteasome activator hPA28 subunit beta 20121230 -9606 5722 PSORS2 - PSS1 HGNC:9574|MIM:602723 17 17q psoriasis susceptibility 2 unknown PSORS2 psoriasis susceptibility 2 O - 20121018 -9606 5723 PSPH - PSP|PSPHD HGNC:9577|MIM:172480|Ensembl:ENSG00000146733|HPRD:01406|Vega:OTTHUMG00000023441 7 7p11.2 phosphoserine phosphatase protein-coding PSPH phosphoserine phosphatase O L-3-phosphoserine phosphatase|O-phosphoserine phosphohydrolase|PSPase 20121230 -9606 5724 PTAFR - PAFR HGNC:9582|MIM:173393|Ensembl:ENSG00000169403|HPRD:01422|Vega:OTTHUMG00000003953 1 1p35-p34.3 platelet-activating factor receptor protein-coding PTAFR platelet-activating factor receptor O PAF-R 20121230 -9606 5725 PTBP1 - HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB HGNC:9583|MIM:600693|Ensembl:ENSG00000011304|HPRD:02823|Vega:OTTHUMG00000181789 19 19p13.3 polypyrimidine tract binding protein 1 protein-coding PTBP1 polypyrimidine tract binding protein 1 O 57 kDa RNA-binding protein PPTB-1|RNA-binding protein|heterogeneous nuclear ribonucleoprotein I|heterogeneous nuclear ribonucleoprotein polypeptide I|hnRNP I|polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I)|polypyrimidine tract-binding protein 1 20121230 -9606 5726 TAS2R38 tcag7.360 PTC|T2R38|T2R61 HGNC:9584|MIM:607751|Ensembl:ENSG00000257138|HPRD:09672|Vega:OTTHUMG00000158374 7 7q34 taste receptor, type 2, member 38 protein-coding TAS2R38 taste receptor, type 2, member 38 O PTC bitter taste receptor|taste receptor type 2 member 38|taste receptor type 2 member 61 20121230 -9606 5727 PTCH1 RP11-435O5.3 BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 HGNC:9585|MIM:601309|Ensembl:ENSG00000185920|HPRD:03200|Vega:OTTHUMG00000020280 9 9q22.3 patched 1 protein-coding PTCH1 patched 1 O PTCH protein +12b|PTCH protein +4'|PTCH protein -10|PTCH protein -3,4,5|patched homolog 1|protein patched homolog 1 20121230 -9606 5728 PTEN - 10q23del|BZS|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 HGNC:9588|MIM:601728|Ensembl:ENSG00000171862|HPRD:03431|Vega:OTTHUMG00000018688 10 10q23.3 phosphatase and tensin homolog protein-coding PTEN phosphatase and tensin homolog O MMAC1 phosphatase and tensin homolog deleted on chromosome 10|mutated in multiple advanced cancers 1|phosphatase and tensin-like protein|phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 20121230 -9606 5729 PTGDR - AS1|ASRT1|DP|DP1|PTGDR1 HGNC:9591|MIM:604687|Ensembl:ENSG00000168229|HPRD:05254|Vega:OTTHUMG00000140299 14 14q22.1 prostaglandin D2 receptor (DP) protein-coding PTGDR prostaglandin D2 receptor (DP) O PGD receptor|PGD2 receptor|prostaglandin D2 receptor 20121230 -9606 5730 PTGDS RP11-229P13.6 L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2 HGNC:9592|MIM:176803|Ensembl:ENSG00000107317|HPRD:08904|Vega:OTTHUMG00000020957 9 9q34.2-q34.3 prostaglandin D2 synthase 21kDa (brain) protein-coding PTGDS prostaglandin D2 synthase 21kDa (brain) O PGD2 synthase|beta-trace protein|cerebrin-28|glutathione-independent PGD synthase|glutathione-independent PGD synthetase|lipocalin-type prostaglandin D synthase|lipocalin-type prostaglandin-D synthase|prostaglandin D synthase|prostaglandin-D2 synthase|prostaglandin-H2 D-isomerase 20121230 -9606 5731 PTGER1 - EP1 HGNC:9593|MIM:176802|Ensembl:ENSG00000160951|HPRD:08903|Vega:OTTHUMG00000039610 19 19p13.1 prostaglandin E receptor 1 (subtype EP1), 42kDa protein-coding PTGER1 prostaglandin E receptor 1 (subtype EP1), 42kDa O PGE receptor EP1 subtype|PGE receptor, EP1 subtype|PGE2 receptor EP1 subtype|prostaglandin E receptor 1, subtype EP1|prostaglandin E2 receptor EP1 subtype|prostanoid EP1 receptor 20121230 -9606 5732 PTGER2 - EP2 HGNC:9594|MIM:176804|Ensembl:ENSG00000125384|HPRD:08905|Vega:OTTHUMG00000140300 14 14q22 prostaglandin E receptor 2 (subtype EP2), 53kDa protein-coding PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa O PGE receptor EP2 subtype|PGE2 receptor EP2 subtype|prostaglandin E2 receptor EP2 subtype|prostanoid EP2 receptor 20121230 -9606 5733 PTGER3 RP5-952N6.2 EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3e|PGE2-R HGNC:9595|MIM:176806|Ensembl:ENSG00000050628|HPRD:08906|Vega:OTTHUMG00000009399 1 1p31.2 prostaglandin E receptor 3 (subtype EP3) protein-coding PTGER3 prostaglandin E receptor 3 (subtype EP3) O PGE receptor, EP3 subtype|PGE2 receptor EP3 subtype|prostaglandin E receotor EP3 subtype 3 isoform|prostaglandin E2 receptor EP3 subtype|prostaglandin receptor (PGE-2)|prostanoid EP3 receptor 20121230 -9606 5734 PTGER4 - EP4|EP4R HGNC:9596|MIM:601586|Ensembl:ENSG00000171522|HPRD:03350|Vega:OTTHUMG00000094769 5 5p13.1 prostaglandin E receptor 4 (subtype EP4) protein-coding PTGER4 prostaglandin E receptor 4 (subtype EP4) O PGE receptor EP4 subtype|PGE receptor, EP4 subtype|PGE2 receptor EP4 subtype|prostaglandin E2 receptor EP4 subtype|prostanoid EP4 receptor 20121230 -9606 5735 PTGER4P1 - - HGNC:9597 9 - prostaglandin E receptor 4 (subtype EP4) pseudogene 1 pseudo PTGER4P1 prostaglandin E receptor 4 (subtype EP4) pseudogene 1 O - 20121230 -9606 5737 PTGFR RP5-944H6.1 FP HGNC:9600|MIM:600563|Ensembl:ENSG00000122420|HPRD:08988|Vega:OTTHUMG00000009644 1 1p31.1 prostaglandin F receptor (FP) protein-coding PTGFR prostaglandin F receptor (FP) O PGF receptor|PGF2 alpha receptor|PGF2-alpha receptor|prostaglandin F2 alpha receptor|prostaglandin F2-alpha receptor|prostaglandin receptor (2-alpha)|prostanoid FP receptor 20121230 -9606 5738 PTGFRN - CD315|CD9P-1|EWI-F|FPRP|SMAP-6 HGNC:9601|MIM:601204|Ensembl:ENSG00000134247|HPRD:03124|Vega:OTTHUMG00000012028 1 1p13.1 prostaglandin F2 receptor negative regulator protein-coding PTGFRN prostaglandin F2 receptor negative regulator O CD9 partner 1|glu-Trp-Ile EWI motif-containing protein F|prostaglandin F2-alpha receptor regulatory protein|prostaglandin F2-alpha receptor-associated protein 20121230 -9606 5739 PTGIR - IP|PRIPR HGNC:9602|MIM:600022|Ensembl:ENSG00000160013|HPRD:08959 19 19q13.3 prostaglandin I2 (prostacyclin) receptor (IP) protein-coding PTGIR prostaglandin I2 (prostacyclin) receptor (IP) O PGI receptor|PGI2 receptor|prostacyclin receptor|prostaglandin I2 receptor|prostanoid IP receptor 20121230 -9606 5740 PTGIS - CYP8|CYP8A1|PGIS|PTGI HGNC:9603|MIM:601699|Ensembl:ENSG00000124212|HPRD:09046|Vega:OTTHUMG00000033077 20 20q13.13 prostaglandin I2 (prostacyclin) synthase protein-coding PTGIS prostaglandin I2 (prostacyclin) synthase O cytochrome P450, family 8, subfamily A, polypeptide 1|prostacyclin synthase|prostaglandin I2 synthase 20121230 -9606 5741 PTH - PTH1 HGNC:9606|MIM:168450|Ensembl:ENSG00000152266|HPRD:01345|Vega:OTTHUMG00000165785 11 11p15.3-p15.1 parathyroid hormone protein-coding PTH parathyroid hormone O parathormone|parathyrin|parathyroid hormone 1 20121230 -9606 5742 PTGS1 RP11-542K23.6 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS HGNC:9604|MIM:176805|Ensembl:ENSG00000095303|HPRD:07518|Vega:OTTHUMG00000020605 9 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) protein-coding PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) O PGH synthase 1|cyclooxygenase-1|prostaglandin G/H synthase 1|prostaglandin H2 synthase 1 20121230 -9606 5743 PTGS2 - COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 HGNC:9605|MIM:600262|Ensembl:ENSG00000073756|HPRD:02599|Vega:OTTHUMG00000035473 1 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) protein-coding PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) O PGH synthase 2|PHS II|cyclooxygenase 2b|prostaglandin G/H synthase 2|prostaglandin H2 synthase 2 20121230 -9606 5744 PTHLH - BDE2|HHM|PLP|PTHR|PTHRP HGNC:9607|MIM:168470|Ensembl:ENSG00000087494|HPRD:01348|Vega:OTTHUMG00000169221 12 12p12.1-p11.2 parathyroid hormone-like hormone protein-coding PTHLH parathyroid hormone-like hormone O PTH-rP|PTH-related protein|osteostatin|parathyroid hormone-like related protein|parathyroid hormone-related protein 20121230 -9606 5745 PTH1R - PFE|PTHR|PTHR1 HGNC:9608|MIM:168468|Ensembl:ENSG00000160801|HPRD:01347|Vega:OTTHUMG00000133515 3 3p22-p21.1 parathyroid hormone 1 receptor protein-coding PTH1R parathyroid hormone 1 receptor O PTH/PTHr receptor|PTH/PTHrP type I receptor|PTH1 receptor|parathyroid hormone receptor 1|parathyroid hormone/parathyroid hormone-related peptide receptor|parathyroid hormone/parathyroid hormone-related protein receptor|seven transmembrane helix receptor 20121230 -9606 5746 PTH2R - PTHR2 HGNC:9609|MIM:601469|Ensembl:ENSG00000144407|HPRD:03276|Vega:OTTHUMG00000132960 2 2q33 parathyroid hormone 2 receptor protein-coding PTH2R parathyroid hormone 2 receptor O PTH2 receptor|parathyroid hormone receptor 2 20121230 -9606 5747 PTK2 - FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK HGNC:9611|MIM:600758|Ensembl:ENSG00000169398|HPRD:02859|Vega:OTTHUMG00000067438 8 8q24.3 PTK2 protein tyrosine kinase 2 protein-coding PTK2 PTK2 protein tyrosine kinase 2 O FADK 1|FAK-related non-kinase polypeptide|focal adhesion kinase 1|focal adhesion kinase-related nonkinase|protein phosphatase 1 regulatory subunit 71|protein phosphatase 1, regulatory subunit 71 20121230 -9606 5753 PTK6 - BRK HGNC:9617|MIM:602004|Ensembl:ENSG00000101213|HPRD:03594|Vega:OTTHUMG00000033039 20 20q13.3 PTK6 protein tyrosine kinase 6 protein-coding PTK6 PTK6 protein tyrosine kinase 6 O breast tumor kinase|protein-tyrosine kinase 6|protein-tyrosine kinase BRK|tyrosine-protein kinase BRK 20121230 -9606 5754 PTK7 - CCK-4|CCK4 HGNC:9618|MIM:601890|Ensembl:ENSG00000112655|HPRD:03534|Vega:OTTHUMG00000014721 6 6p21.1-p12.2 PTK7 protein tyrosine kinase 7 protein-coding PTK7 PTK7 protein tyrosine kinase 7 O colon carcinoma kinase 4|inactive tyrosine-protein kinase 7|pseudo tyrosine kinase receptor 7|tyrosine-protein kinase-like 7 20121230 -9606 5756 TWF1 - A6|PTK9 HGNC:9620|MIM:610932|Ensembl:ENSG00000151239|HPRD:10174|Vega:OTTHUMG00000169426 12 12q12 twinfilin, actin-binding protein, homolog 1 (Drosophila) protein-coding TWF1 twinfilin, actin-binding protein, homolog 1 (Drosophila) O A6 protein tyrosine kinase|PTK9 protein tyrosine kinase 9|protein A6|protein tyrosine kinase 9|twinfilin-1 20121230 -9606 5757 PTMA - TMSA HGNC:9623|MIM:188390|Ensembl:ENSG00000187514|HPRD:01778|Vega:OTTHUMG00000153810 2 2q37.1 prothymosin, alpha protein-coding PTMA prothymosin, alpha O gene sequence 28|prothymosin alpha|prothymosin alpha protein 20121230 -9606 5758 PTMAP1 - - HGNC:9624 6 6p21.33 prothymosin, alpha pseudogene 1 (gene sequence 26) pseudo PTMAP1 prothymosin, alpha pseudogene 1 (gene sequence 26) O - 20121230 -9606 5759 PTMAP2 - - HGNC:9625 5 5q23.1 prothymosin, alpha pseudogene 2 (gene sequence 32) pseudo PTMAP2 prothymosin, alpha pseudogene 2 (gene sequence 32) O - 20121230 -9606 5760 PTMAP3 - - HGNC:9626 20 20p11.23 prothymosin, alpha pseudogene 3 (gene sequence 34) pseudo PTMAP3 prothymosin, alpha pseudogene 3 (gene sequence 34) O - 20121230 -9606 5761 PTMAP4 - PTMA HGNC:9627 12 12p13.31 prothymosin, alpha pseudogene 4 (gene sequence 112) pseudo PTMAP4 prothymosin, alpha pseudogene 4 (gene sequence 112) O - 20121230 -9606 5763 PTMS - ParaT HGNC:9629|MIM:168440|Ensembl:ENSG00000159335|HPRD:01344|Vega:OTTHUMG00000169196 12 12p13 parathymosin protein-coding PTMS parathymosin O - 20121230 -9606 5764 PTN - HARP|HBGF8|HBNF|NEGF1 HGNC:9630|MIM:162095|Ensembl:ENSG00000105894|HPRD:01199|Vega:OTTHUMG00000155709 7 7q33 pleiotrophin protein-coding PTN pleiotrophin O HB-GAM|HBBM|HBGF-8|HBNF-1|OSF-1|heparin affin regulatory protein|heparin binding growth factor 8|heparin-binding brain mitogen|heparin-binding growth factor 8|heparin-binding growth-associated molecule|heparin-binding neurite outgrowth-promoting factor 1|neurite growth-promoting factor 1|osteoblast-specific factor 1|pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1) 20121230 -9606 5765 PTOS1 - - HGNC:9631|MIM:178300 1 1p34.1-p32 ptosis, congenital 1 (autosomal dominant) unknown PTOS1 ptosis, congenital 1 (autosomal dominant) O - 20120622 -9606 5767 PTP4A2P1 - PTP4AP1|h-PRL-1 HGNC:9637 17 17q21 protein tyrosine phosphatase type IVA, member 2 pseudogene 1 pseudo PTP4A2P1 protein tyrosine phosphatase type IVA, member 2 pseudogene 1 O - 20121230 -9606 5768 QSOX1 RP11-502H18.3 Q6|QSCN6 HGNC:9756|MIM:603120|Ensembl:ENSG00000116260|HPRD:06785|HPRD:08043|Vega:OTTHUMG00000035256 1 1q24 quiescin Q6 sulfhydryl oxidase 1 protein-coding QSOX1 quiescin Q6 sulfhydryl oxidase 1 O hQSOX|sulfhydryl oxidase 1 20121230 -9606 5769 PTP4A2P2 - PTP4AP2 HGNC:9638 11 11q24-q25 protein tyrosine phosphatase type IVA, member 2 pseudogene 2 pseudo PTP4A2P2 protein tyrosine phosphatase type IVA, member 2 pseudogene 2 O - 20121230 -9606 5770 PTPN1 - PTP1B HGNC:9642|MIM:176885|Ensembl:ENSG00000196396|HPRD:01477|Vega:OTTHUMG00000032729 20 20q13.1-q13.2 protein tyrosine phosphatase, non-receptor type 1 protein-coding PTPN1 protein tyrosine phosphatase, non-receptor type 1 O protein tyrosine phosphatase 1B|protein tyrosine phosphatase, placental|protein-tyrosine phosphatase 1B|tyrosine-protein phosphatase non-receptor type 1 20121230 -9606 5771 PTPN2 - PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP HGNC:9650|MIM:176887|Ensembl:ENSG00000175354|HPRD:06768|Vega:OTTHUMG00000131702 18 18p11.3-p11.2 protein tyrosine phosphatase, non-receptor type 2 protein-coding PTPN2 protein tyrosine phosphatase, non-receptor type 2 O T-cell protein tyrosine phosphatase|tyrosine-protein phosphatase non-receptor type 2 20121230 -9606 5774 PTPN3 RP11-18A3.3 PTP-H1|PTPH1 HGNC:9655|MIM:176877|Ensembl:ENSG00000070159|HPRD:06767|Vega:OTTHUMG00000020475 9 9q31 protein tyrosine phosphatase, non-receptor type 3 protein-coding PTPN3 protein tyrosine phosphatase, non-receptor type 3 O cytoskeletal-associated protein tyrosine phosphatase|protein-tyrosine phosphatase H1|tyrosine-protein phosphatase non-receptor type 3 20121230 -9606 5775 PTPN4 - MEG|PTPMEG|PTPMEG1 HGNC:9656|MIM:176878|Ensembl:ENSG00000088179|HPRD:01471|Vega:OTTHUMG00000131436 2 2q14.2 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) protein-coding PTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) O PTPase-MEG1|megakaryocyte phosphatase|megakaryocyte protein-tyrosine phosphatase|protein tyrosine phosphatase MEG1|protein-tyrosine phosphatase MEG1|tyrosine-protein phosphatase non-receptor type 4 20121230 -9606 5777 PTPN6 - HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1 HGNC:9658|MIM:176883|Ensembl:ENSG00000111679|HPRD:01475|Vega:OTTHUMG00000168518 12 12p13 protein tyrosine phosphatase, non-receptor type 6 protein-coding PTPN6 protein tyrosine phosphatase, non-receptor type 6 O hematopoietic cell phosphatase|hematopoietic cell protein-tyrosine phosphatase|protein-tyrosine phosphatase 1C|protein-tyrosine phosphatase SHP-1|tyrosine-protein phosphatase non-receptor type 6 20121230 -9606 5778 PTPN7 RP11-294K24.3 BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI HGNC:9659|MIM:176889|Ensembl:ENSG00000143851|HPRD:01480|Vega:OTTHUMG00000035931 1 1q32.1 protein tyrosine phosphatase, non-receptor type 7 protein-coding PTPN7 protein tyrosine phosphatase, non-receptor type 7 O dual specificity phosphatase 1|hematopoietic protein-tyrosine phosphatase|protein-tyrosine phosphatase LC-PTP|protein-tyrosine phosphatase, nonreceptor-type, stress induced|tyrosine-protein phosphatase non-receptor type 7 20121230 -9606 5780 PTPN9 - MEG2|PTPMEG2 HGNC:9661|MIM:600768|Ensembl:ENSG00000169410|HPRD:02864|Vega:OTTHUMG00000142838 15 15q24.2 protein tyrosine phosphatase, non-receptor type 9 protein-coding PTPN9 protein tyrosine phosphatase, non-receptor type 9 O PTPase MEG2|PTPase-MEG2|protein-tyrosine phosphatase MEG2|tyrosine-protein phosphatase non-receptor type 9 20121230 -9606 5781 PTPN11 - BPTP3|CFC|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 HGNC:9644|MIM:176876|Ensembl:ENSG00000179295|HPRD:01470|Vega:OTTHUMG00000134334 12 12q24 protein tyrosine phosphatase, non-receptor type 11 protein-coding PTPN11 protein tyrosine phosphatase, non-receptor type 11 O PTP-2C|protein-tyrosine phosphatase 1D|protein-tyrosine phosphatase 2C|tyrosine-protein phosphatase non-receptor type 11 20121230 -9606 5782 PTPN12 tcag7.1075 PTP-PEST|PTPG1 HGNC:9645|MIM:600079|Ensembl:ENSG00000127947|HPRD:02513|Vega:OTTHUMG00000023501 7 7q11.23 protein tyrosine phosphatase, non-receptor type 12 protein-coding PTPN12 protein tyrosine phosphatase, non-receptor type 12 O protein-tyrosine phosphatase G1|tyrosine-protein phosphatase non-receptor type 12 20121230 -9606 5783 PTPN13 - FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E HGNC:9646|MIM:600267|Ensembl:ENSG00000163629|HPRD:02602|Vega:OTTHUMG00000160968 4 4q21.3 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) protein-coding PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) O fas-associated protein-tyrosine phosphatase 1|hPTPE1|protein-tyrosine phosphatase 1E|protein-tyrosine phosphatase PTPL1|tyrosine-protein phosphatase non-receptor type 13 20121230 -9606 5784 PTPN14 RP11-176D17.1 PEZ|PTP36 HGNC:9647|MIM:603155|Ensembl:ENSG00000152104|HPRD:04402|Vega:OTTHUMG00000037039 1 1q32.2 protein tyrosine phosphatase, non-receptor type 14 protein-coding PTPN14 protein tyrosine phosphatase, non-receptor type 14 O cytoskeletal-associated protein tyrosine phosphatase|protein-tyrosine phosphatase pez|tyrosine-protein phosphatase non-receptor type 14 20121230 -9606 5786 PTPRA RP4-534B8.1 HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA HGNC:9664|MIM:176884|Ensembl:ENSG00000132670|HPRD:01476|Vega:OTTHUMG00000031718 20 20p13 protein tyrosine phosphatase, receptor type, A protein-coding PTPRA protein tyrosine phosphatase, receptor type, A O Leukocyte common antigen-related peptide (protein tyrosine phosphate)|PTPLCA-related phosphatase|PTPase-alpha|protein tyrosine phosphatase, receptor type, alpha polypeptide|protein-tyrosine phosphatase alpha|receptor-type tyrosine-protein phosphatase alpha|tyrosine phosphatase alpha 20121230 -9606 5787 PTPRB - HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP HGNC:9665|MIM:176882|Ensembl:ENSG00000127329|HPRD:01474|Vega:OTTHUMG00000169499 12 12q15-q21 protein tyrosine phosphatase, receptor type, B protein-coding PTPRB protein tyrosine phosphatase, receptor type, B O VE-PTP|protein tyrosine phosphatase, receptor type, beta polypeptide|receptor-type tyrosine-protein phosphatase beta|vascular endothelial protein tyrosine phosphatase 20121230 -9606 5788 PTPRC RP11-553K8.4 B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 HGNC:9666|MIM:151460|Ensembl:ENSG00000081237|HPRD:01050|Vega:OTTHUMG00000035702 1 1q31-q32 protein tyrosine phosphatase, receptor type, C protein-coding PTPRC protein tyrosine phosphatase, receptor type, C O CD45 antigen|T200 glycoprotein|T200 leukocyte common antigen|protein tyrosine phosphatase, receptor type, c polypeptide|receptor-type tyrosine-protein phosphatase C 20121230 -9606 5789 PTPRD - HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA HGNC:9668|MIM:601598|Ensembl:ENSG00000153707|HPRD:03358|Vega:OTTHUMG00000021005 9 9p23-p24.3 protein tyrosine phosphatase, receptor type, D protein-coding PTPRD protein tyrosine phosphatase, receptor type, D O R-PTP-delta|protein tyrosine phosphatase, receptor type, delta polypeptide|protein-tyrosine phosphatase delta|receptor-type tyrosine-protein phosphatase delta 20121230 -9606 5790 PTPRCAP - CD45-AP|LPAP HGNC:9667|MIM:601577|Ensembl:ENSG00000213402|HPRD:09032|Vega:OTTHUMG00000150325 11 11q13.3 protein tyrosine phosphatase, receptor type, C-associated protein protein-coding PTPRCAP protein tyrosine phosphatase, receptor type, C-associated protein O CD45 associated protein|CD45-associated protein|PTPRC-associated protein|lymphocyte phosphatase-associated phosphoprotein|protein tyrosine phosphatase receptor type C-associated protein|protein tyrosine phosphatase, receptor type, c polypeptide-associated protein 20121230 -9606 5791 PTPRE RP11-380J17.1 HPTPE|PTPE|R-PTP-EPSILON HGNC:9669|MIM:600926|Ensembl:ENSG00000132334|HPRD:02956|Vega:OTTHUMG00000019254 10 10q26 protein tyrosine phosphatase, receptor type, E protein-coding PTPRE protein tyrosine phosphatase, receptor type, E O protein tyrosine phosphatase, receptor type, epsilon polypeptide|receptor-type tyrosine-protein phosphatase epsilon 20121230 -9606 5792 PTPRF RP5-1029K14.1 LAR HGNC:9670|MIM:179590|Ensembl:ENSG00000142949|HPRD:01552|Vega:OTTHUMG00000007501 1 1p34 protein tyrosine phosphatase, receptor type, F protein-coding PTPRF protein tyrosine phosphatase, receptor type, F O LCA-homolog|leukocyte antigen-related (LAR) PTP receptor|leukocyte antigen-related tyrosine phosphatase|leukocyte common antigen related|protein tyrosine phosphatase, receptor type, F polypeptide|receptor-linked protein-tyrosine phosphatase LAR|receptor-type tyrosine-protein phosphatase F 20121230 -9606 5793 PTPRG - HPTPG|PTPG|R-PTP-GAMMA|RPTPG HGNC:9671|MIM:176886|Ensembl:ENSG00000144724|HPRD:01478|Vega:OTTHUMG00000158660 3 3p21-p14 protein tyrosine phosphatase, receptor type, G protein-coding PTPRG protein tyrosine phosphatase, receptor type, G O H_RG317H01.1|protein tyrosine phosphatase gamma|protein tyrosine phosphatase, receptor type, gamma polypeptide|protein-tyrosine phosphatase gamma|receptor type protein tyrosine phosphatase gamma|receptor tyrosine phosphatase gamma|receptor-type protein phosphatase gamma|receptor-type tyrosine-protein phosphatase gamma 20121230 -9606 5794 PTPRH - SAP1 HGNC:9672|MIM:602510|Ensembl:ENSG00000080031|HPRD:03942|Vega:OTTHUMG00000180701 19 19q13.4 protein tyrosine phosphatase, receptor type, H protein-coding PTPRH protein tyrosine phosphatase, receptor type, H O R-PTP-H|receptor-type tyrosine-protein phosphatase H|stomach cancer-associated protein tyrosine phosphatase 1|transmembrane-type protein-tyrosine phosphatase type H 20121230 -9606 5795 PTPRJ - CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 HGNC:9673|MIM:600925|Ensembl:ENSG00000149177|HPRD:02955|Vega:OTTHUMG00000166573 11 11p11.2 protein tyrosine phosphatase, receptor type, J protein-coding PTPRJ protein tyrosine phosphatase, receptor type, J O CD148 antigen|DEP-1|HPTP eta|R-PTP-J|density-enhanced phosphatase 1|human density enhanced phosphatase-1|protein tyrosine phosphatase, receptor type, J polypeptide|protein-tyrosine phosphatase eta|protein-tyrosine phosphatase receptor type J|receptor-type tyrosine-protein phosphatase eta|susceptibility to colon cancer 1, mouse, homolog of 20121230 -9606 5796 PTPRK RP3-480J14.1 R-PTP-kappa HGNC:9674|MIM:602545|Ensembl:ENSG00000152894|HPRD:03968|Vega:OTTHUMG00000015536 6 6q22.2-q22.3 protein tyrosine phosphatase, receptor type, K protein-coding PTPRK protein tyrosine phosphatase, receptor type, K O dJ480J14.2.1 (protein tyrosine phosphatase, receptor type, K (R-PTP-KAPPA, protein tyrosine phosphatase kappa , protein tyrosine phosphatase kappa|protein-tyrosine phosphatase kappa|protein-tyrosine phosphatase, receptor type, kappa|receptor-type tyrosine-protein phosphatase kappa 20121230 -9606 5797 PTPRM - PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu HGNC:9675|MIM:176888|Ensembl:ENSG00000173482|HPRD:01479|Vega:OTTHUMG00000131575 18 18p11.2 protein tyrosine phosphatase, receptor type, M protein-coding PTPRM protein tyrosine phosphatase, receptor type, M O protein tyrosine phosphatase mu|protein tyrosine phosphatase, receptor type, mu polypeptide|protein-tyrosine phosphatase mu|receptor-type tyrosine-protein phosphatase mu 20121230 -9606 5798 PTPRN - IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N HGNC:9676|MIM:601773|Ensembl:ENSG00000054356|HPRD:03466|Vega:OTTHUMG00000133129 2 2q35-q36.1 protein tyrosine phosphatase, receptor type, N protein-coding PTPRN protein tyrosine phosphatase, receptor type, N O ICA 512|PTP IA-2|islet cell antigen 2|islet cell antigen 512|islet cell autoantigen 3|protein tyrosine phosphatase-like N|receptor-type tyrosine-protein phosphatase-like N 20121230 -9606 5799 PTPRN2 - IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2 HGNC:9677|MIM:601698|Ensembl:ENSG00000155093|HPRD:03413|Vega:OTTHUMG00000152646 7 7q36 protein tyrosine phosphatase, receptor type, N polypeptide 2 protein-coding PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 O IAR/receptor-like protein-tyrosine phosphatase|islet cell autoantigen-related protein|phogrin|protein tyrosine phosphatase receptor pi|receptor-type tyrosine-protein phosphatase N2|tyrosine phosphatase IA-2 beta 20121230 -9606 5800 PTPRO - GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O HGNC:9678|MIM:600579|Ensembl:ENSG00000151490|HPRD:02784|Vega:OTTHUMG00000168786 12 12p13.3-p13.2|12p13-p12 protein tyrosine phosphatase, receptor type, O protein-coding PTPRO protein tyrosine phosphatase, receptor type, O O PTP phi|PTPase U2|glomerular epithelial protein 1|osteoclastic transmembrane protein-tyrosine phosphatase|phosphotyrosine phosphatase U2|protein tyrosine phosphatase PTP-U2|receptor-type tyrosine-protein phosphatase O 20121230 -9606 5801 PTPRR - EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ HGNC:9680|MIM:602853|Ensembl:ENSG00000153233|HPRD:04169|Vega:OTTHUMG00000169502 12 12q15 protein tyrosine phosphatase, receptor type, R protein-coding PTPRR protein tyrosine phosphatase, receptor type, R O Ch-1 PTPase|NC-PTPCOM1|R-PTP-R|ch-1PTPase|protein tyrosine phosphatase Cr1PTPase|protein-tyrosine phosphatase NC-PTPCOM1|protein-tyrosine phosphatase PCPTP1|receptor-type tyrosine-protein phosphatase R 20121230 -9606 5802 PTPRS - PTPSIGMA HGNC:9681|MIM:601576|Ensembl:ENSG00000105426|HPRD:03344|Vega:OTTHUMG00000180325 19 19p13.3 protein tyrosine phosphatase, receptor type, S protein-coding PTPRS protein tyrosine phosphatase, receptor type, S O R-PTP-S|R-PTP-sigma|protein tyrosine phosphatase PTPsigma|protein tyrosine phosphatase, receptor type, sigma|receptor-type tyrosine-protein phosphatase S|receptor-type tyrosine-protein phosphatase sigma 20121230 -9606 5803 PTPRZ1 - HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan HGNC:9685|MIM:176891|Ensembl:ENSG00000106278|HPRD:01481|Vega:OTTHUMG00000157057 7 7q31.3 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 protein-coding PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 O protein tyrosine phosphatase, receptor-type, zeta polypeptide 1|protein-tyrosine phosphatase receptor type Z polypeptide 2|receptor-type tyrosine phosphatase beta/zeta|receptor-type tyrosine-protein phosphatase zeta 20121230 -9606 5804 PTPRZ2 - HTPZP2|PTPRZ HGNC:9686|MIM:604008 1 1p36.3 protein tyrosine phosphatase, receptor-type, Z polypeptide 2 protein-coding PTPRZ2 protein tyrosine phosphatase, receptor-type, Z polypeptide 2 O protein tyrosine phosphatase, receptor-type, zeta polypeptide 2 20121120 -9606 5805 PTS - PTPS HGNC:9689|MIM:612719|Ensembl:ENSG00000150787|HPRD:11840|Vega:OTTHUMG00000167167 11 11q22.3 6-pyruvoyltetrahydropterin synthase protein-coding PTS 6-pyruvoyltetrahydropterin synthase O 6-pyruvoyl tetrahydrobiopterin synthase|PTP synthase 20121230 -9606 5806 PTX3 - TNFAIP5|TSG-14 HGNC:9692|MIM:602492|Ensembl:ENSG00000163661|HPRD:03928|Vega:OTTHUMG00000158750 3 3q25 pentraxin 3, long protein-coding PTX3 pentraxin 3, long O TNF alpha-induced protein 5|pentaxin-related gene, rapidly induced by IL-1 beta, tumor necrosis factor, alpha-induced protein 5|pentaxin-related protein PTX3|pentraxin-3|pentraxin-related gene, rapidly induced by IL-1 beta|pentraxin-related protein PTX3|tumor necrosis factor alpha-induced protein 5|tumor necrosis factor, alpha-induced protein 5|tumor necrosis factor-inducible gene 14 protein|tumor necrosis factor-inducible protein TSG-14 20121230 -9606 5810 RAD1 - HRAD1|REC1 HGNC:9806|MIM:603153|Ensembl:ENSG00000113456|HPRD:04400|Vega:OTTHUMG00000090783 5 5p13.2 RAD1 homolog (S. pombe) protein-coding RAD1 RAD1 homolog (S. pombe) O DNA repair exonuclease REC1|DNA repair exonuclease rad1 homolog|cell cycle checkpoint protein Hrad1|cell cycle checkpoint protein RAD1|checkpoint control protein HRAD1|exonuclease homolog RAD1|rad1-like DNA damage checkpoint protein 20121230 -9606 5813 PURA hCG_45299 PUR-ALPHA|PUR1|PURALPHA HGNC:9701|MIM:600473|Ensembl:ENSG00000185129|HPRD:02721|Vega:OTTHUMG00000129242 5 5q31 purine-rich element binding protein A protein-coding PURA purine-rich element binding protein A O purine-rich single-stranded DNA-binding protein alpha|transcriptional activator protein Pur-alpha 20121230 -9606 5814 PURB - PURBETA HGNC:9702|MIM:608887|Ensembl:ENSG00000146676|HPRD:12325|Vega:OTTHUMG00000023578 7 7p13 purine-rich element binding protein B protein-coding PURB purine-rich element binding protein B O purine-rich element-binding protein B|transcriptional activator protein Pur-beta 20121230 -9606 5816 PVALB CITF22-126G10.2 D22S749 HGNC:9704|MIM:168890|Ensembl:ENSG00000100362|HPRD:01353|Vega:OTTHUMG00000150547 22 22q13.1 parvalbumin protein-coding PVALB parvalbumin O parvalbumin alpha 20121230 -9606 5817 PVR - CD155|HVED|NECL5|Necl-5|PVS|TAGE4 HGNC:9705|MIM:173850|Ensembl:ENSG00000073008|HPRD:01434|Vega:OTTHUMG00000151527 19 19q13.2 poliovirus receptor protein-coding PVR poliovirus receptor O nectin-like 5|nectin-like protein 5 20121230 -9606 5818 PVRL1 - CD111|CLPED1|ED4|HIgR|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1 HGNC:9706|MIM:600644|Ensembl:ENSG00000110400|HPRD:07200|Vega:OTTHUMG00000166177 11 11q23.3 poliovirus receptor-related 1 (herpesvirus entry mediator C) protein-coding PVRL1 poliovirus receptor-related 1 (herpesvirus entry mediator C) O ectodermal dysplasia 4 (Margarita Island type)|herpes virus entry mediator C|herpesvirus Ig-like receptor|nectin 1|poliovirus receptor-like 1|poliovirus receptor-related protein 1 20121230 -9606 5819 PVRL2 - CD112|HVEB|PRR2|PVRR2 HGNC:9707|MIM:600798|Ensembl:ENSG00000130202|HPRD:02879|Vega:OTTHUMG00000180839 19 19q13.2 poliovirus receptor-related 2 (herpesvirus entry mediator B) protein-coding PVRL2 poliovirus receptor-related 2 (herpesvirus entry mediator B) O herpesvirus entry protein B|nectin-2|poliovirus receptor-like 2|poliovirus receptor-related protein 2 20121230 -9606 5820 PVT1 - LINC00079|NCRNA00079 HGNC:9709|MIM:165140 8 8q24 Pvt1 oncogene (non-protein coding) miscRNA PVT1 Pvt1 oncogene (non-protein coding) O - 20121230 -9606 5822 PWP2 - EHOC-17|PWP2H|UTP1 HGNC:9711|MIM:601475|Ensembl:ENSG00000241945|HPRD:03279|Vega:OTTHUMG00000086893 21 21q22.3 PWP2 periodic tryptophan protein homolog (yeast) protein-coding PWP2 PWP2 periodic tryptophan protein homolog (yeast) O periodic tryptophan protein 2 homolog 20121230 -9606 5824 PEX19 OK/SW-cl.22 D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1 HGNC:9713|MIM:600279|Ensembl:ENSG00000162735|HPRD:02610|Vega:OTTHUMG00000033112 1 1q23.2 peroxisomal biogenesis factor 19 protein-coding PEX19 peroxisomal biogenesis factor 19 O 33 kDa housekeeping protein|housekeeping gene, 33kD|peroxin-19|peroxisomal farnesylated protein 20121230 -9606 5825 ABCD3 - ABC43|PMP70|PXMP1|ZWS2 HGNC:67|MIM:170995|Ensembl:ENSG00000117528|HPRD:01368|Vega:OTTHUMG00000010717 1 1p21.3 ATP-binding cassette, sub-family D (ALD), member 3 protein-coding ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 O 70 kDa peroxisomal membrane protein|ATP-binding cassette sub-family D member 3|Peroxisomal membrane protein-1 (70kD)|dJ824O18.1 (ATP-binding cassette, sub-family D (ALD), member 3 (PMP70, PXMP1))|peroxisomal membrane protein 1 (70kD, Zellweger syndrome) 20121230 -9606 5826 ABCD4 - ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L HGNC:68|MIM:603214|Ensembl:ENSG00000119688|HPRD:04446|Vega:OTTHUMG00000171207 14 14q24.3 ATP-binding cassette, sub-family D (ALD), member 4 protein-coding ABCD4 ATP-binding cassette, sub-family D (ALD), member 4 O 69 kDa peroxisomal ABC-transporter|ATP-binding cassette sub-family D member 4|PMP70-related protein|PXMP1-L|peroxisomal membrane protein 69 20121230 -9606 5827 PXMP2 - PMP22 HGNC:9716|Ensembl:ENSG00000176894|HPRD:10176|Vega:OTTHUMG00000168019 12 12q24.33 peroxisomal membrane protein 2, 22kDa protein-coding PXMP2 peroxisomal membrane protein 2, 22kDa O 22 kDa peroxisomal membrane protein|peroxisomal membrane protein 2 20121230 -9606 5828 PEX2 - PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 HGNC:9717|MIM:170993|Ensembl:ENSG00000164751|HPRD:01367|Vega:OTTHUMG00000164530 8 8q21.1 peroxisomal biogenesis factor 2 protein-coding PEX2 peroxisomal biogenesis factor 2 O 35 kDa peroxisomal membrane protein|RING finger protein 72|peroxisomal membrane protein 3, 35kDa|peroxisome assembly factor 1|peroxisome assembly factor-1|peroxisome biogenesis factor 2 20121230 -9606 5829 PXN hCG_1778014 - HGNC:9718|MIM:602505|Ensembl:ENSG00000089159|Vega:OTTHUMG00000169169 12 12q24.31 paxillin protein-coding PXN paxillin O - 20121230 -9606 5830 PEX5 - PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1 HGNC:9719|MIM:600414|Ensembl:ENSG00000139197|HPRD:02684|Vega:OTTHUMG00000168175 12 12p13.31 peroxisomal biogenesis factor 5 protein-coding PEX5 peroxisomal biogenesis factor 5 O PTS1 receptor|peroxin-5|peroxisomal C-terminal targeting signal import receptor|peroxisomal targeting signal 1 (SKL type) receptor|peroxisomal targeting signal 1 receptor|peroxisomal targeting signal import receptor|peroxisomal targeting signal receptor 1|peroxisome receptor 1 20121230 -9606 5831 PYCR1 - ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR HGNC:9721|MIM:179035|Ensembl:ENSG00000183010|HPRD:01528|Vega:OTTHUMG00000178436 17 17q25.3 pyrroline-5-carboxylate reductase 1 protein-coding PYCR1 pyrroline-5-carboxylate reductase 1 O P5C reductase 1|P5CR 1|mitochondrial pyrroline-5-carboxylate reductase 1|proliferation-inducing protein 45|pyrroline-5-carboxylate reductase 1, mitochondrial 20121230 -9606 5832 ALDH18A1 - ARCL3A|GSAS|P5CS|PYCS HGNC:9722|MIM:138250|Ensembl:ENSG00000059573|HPRD:00696|Vega:OTTHUMG00000018815 10 10q24.3 aldehyde dehydrogenase 18 family, member A1 protein-coding ALDH18A1 aldehyde dehydrogenase 18 family, member A1 O aldehyde dehydrogenase family 18 member A1|delta-1-pyrroline-5-carboxylate synthase|delta-1-pyrroline-5-carboxylate synthetase|delta1-pyrroline-5-carboxlate synthetase|pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 20121230 -9606 5833 PCYT2 - ET HGNC:8756|MIM:602679|Ensembl:ENSG00000185813|HPRD:04059|Vega:OTTHUMG00000177956 17 17q25.3 phosphate cytidylyltransferase 2, ethanolamine protein-coding PCYT2 phosphate cytidylyltransferase 2, ethanolamine O CTP:phosphoethanolamine cytidylyltransferase|ethanolamine-phosphate cytidylyltransferase|phosphorylethanolamine transferase 20121230 -9606 5834 PYGB RP5-965G21.1 GPBB HGNC:9723|MIM:138550|Ensembl:ENSG00000100994|HPRD:00720|Vega:OTTHUMG00000032117 20 20p11.2-p11.1 phosphorylase, glycogen; brain protein-coding PYGB phosphorylase, glycogen; brain O glycogen phosphorylase B|glycogen phosphorylase, brain form 20121230 -9606 5836 PYGL - GSD6 HGNC:9725|MIM:613741|Ensembl:ENSG00000100504|HPRD:01987|Vega:OTTHUMG00000166596 14 14q21-q22 phosphorylase, glycogen, liver protein-coding PYGL phosphorylase, glycogen, liver O glycogen phosphorylase, liver form 20121230 -9606 5837 PYGM - - HGNC:9726|MIM:608455|Ensembl:ENSG00000068976|HPRD:01986|Vega:OTTHUMG00000066835 11 11q12-q13.2 phosphorylase, glycogen, muscle protein-coding PYGM phosphorylase, glycogen, muscle O glycogen phosphorylase, muscle form|myophosphorylase 20121230 -9606 5858 PZP - CPAMD6 HGNC:9750|MIM:176420|Ensembl:ENSG00000126838|HPRD:07178|Vega:OTTHUMG00000154915 12 12p13-p12.2 pregnancy-zone protein protein-coding PZP pregnancy-zone protein O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 6|pregnancy zone protein 20121230 -9606 5859 QARS - GLNRS|PRO2195 HGNC:9751|MIM:603727|Ensembl:ENSG00000172053|HPRD:07223|Vega:OTTHUMG00000156774 3 3p21.31 glutaminyl-tRNA synthetase protein-coding QARS glutaminyl-tRNA synthetase O glutamine tRNA ligase|glutamine--tRNA ligase|glutamine-tRNA synthetase 20121230 -9606 5860 QDPR - DHPR|PKU2|SDR33C1 HGNC:9752|MIM:612676|Ensembl:ENSG00000151552|HPRD:02025|Vega:OTTHUMG00000128537 4 4p15.31 quinoid dihydropteridine reductase protein-coding QDPR quinoid dihydropteridine reductase O 6,7-dihydropteridine reductase|HDHPR|dihydropteridine reductase|short chain dehydrogenase/reductase family 33C, member 1 20121230 -9606 5861 RAB1A - RAB1|YPT1 HGNC:9758|MIM:179508|Ensembl:ENSG00000138069|HPRD:01538|Vega:OTTHUMG00000152725 2 2p14 RAB1A, member RAS oncogene family protein-coding RAB1A RAB1A, member RAS oncogene family O GTP binding protein Rab1a|RAB1, member RAS oncogene family|Rab GTPase YPT1 homolog|YPT1-related protein|ras-related protein Rab-1A 20121230 -9606 5862 RAB2A - LHX|RAB2 HGNC:9763|MIM:179509|Ensembl:ENSG00000104388|HPRD:01539|Vega:OTTHUMG00000134298 8 8q12.1 RAB2A, member RAS oncogene family protein-coding RAB2A RAB2A, member RAS oncogene family O RAB2, member RAS oncogene family|ras-related protein Rab-2A|small GTP binding protein RAB2A 20121230 -9606 5863 RGL2 DADB-159G18.6 HKE1.5|KE1.5|RAB2L HGNC:9769|MIM:602306|Ensembl:ENSG00000237441|HPRD:03810|Vega:OTTHUMG00000031072 6 6p21.3 ral guanine nucleotide dissociation stimulator-like 2 protein-coding RGL2 ral guanine nucleotide dissociation stimulator-like 2 O GDS-related protein|ralGDS-like 2|ralGDS-like factor|ras-associated protein RAB2L 20121230 -9606 5864 RAB3A - - HGNC:9777|MIM:179490|Ensembl:ENSG00000105649|HPRD:01535|Vega:OTTHUMG00000137378 19 19p13.2 RAB3A, member RAS oncogene family protein-coding RAB3A RAB3A, member RAS oncogene family O RAS-associated protein RAB3A|ras-related protein Rab-3A 20121230 -9606 5865 RAB3B - - HGNC:9778|MIM:179510|Ensembl:ENSG00000169213|HPRD:01540|Vega:OTTHUMG00000008627 1 1p32-p31 RAB3B, member RAS oncogene family protein-coding RAB3B RAB3B, member RAS oncogene family O brain antigen RAB3B|ras-related protein Rab-3B 20121230 -9606 5866 RAB3IL1 - GRAB HGNC:9780|Ensembl:ENSG00000167994|HPRD:10181|Vega:OTTHUMG00000167524 11 11q12.2 RAB3A interacting protein (rabin3)-like 1 protein-coding RAB3IL1 RAB3A interacting protein (rabin3)-like 1 O guanine nucleotide exchange factor for Rab-3A|rab3A-interacting-like protein 1|rabin3-like 1 20121230 -9606 5867 RAB4A - HRES-1/RAB4|RAB4 HGNC:9781|MIM:179511|Ensembl:ENSG00000168118|HPRD:01541|Vega:OTTHUMG00000037627 1 1q42-q43 RAB4A, member RAS oncogene family protein-coding RAB4A RAB4A, member RAS oncogene family O ras-related protein Rab-4A 20121230 -9606 5868 RAB5A - RAB5 HGNC:9783|MIM:179512|Ensembl:ENSG00000144566|HPRD:01542|Vega:OTTHUMG00000129889 3 3p24-p22 RAB5A, member RAS oncogene family protein-coding RAB5A RAB5A, member RAS oncogene family O RAS-associated protein RAB5A|ras-related protein Rab-5A 20121230 -9606 5869 RAB5B - - HGNC:9784|MIM:179514|Ensembl:ENSG00000111540|HPRD:01544|Vega:OTTHUMG00000169682 12 12q13 RAB5B, member RAS oncogene family protein-coding RAB5B RAB5B, member RAS oncogene family O ras-related protein Rab-5B 20121230 -9606 5870 RAB6A - RAB6 HGNC:9786|MIM:179513|Ensembl:ENSG00000175582|HPRD:01543|Vega:OTTHUMG00000134308 11 11q13.3 RAB6A, member RAS oncogene family protein-coding RAB6A RAB6A, member RAS oncogene family O RAB6, member RAS oncogene family|Rab GTPase|ras-related protein Rab-6A 20121230 -9606 5871 MAP4K2 - BL44|GCK|RAB8IP HGNC:6864|MIM:603166|Ensembl:ENSG00000168067|HPRD:04408|Vega:OTTHUMG00000045328 11 11q13 mitogen-activated protein kinase kinase kinase kinase 2 protein-coding MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 O B lymphocyte serine/threonine protein kinase|MAPK/ERK kinase kinase kinase 2|MEK kinase kinase 2|MEKKK 2|Rab8 interacting protein|germinal centre kinase (GC kinase) 20121230 -9606 5872 RAB13 GIG4 - HGNC:9762|MIM:602672|Ensembl:ENSG00000143545|HPRD:04053|Vega:OTTHUMG00000036589 1 1q21.2 RAB13, member RAS oncogene family protein-coding RAB13 RAB13, member RAS oncogene family O RAS-associated protein RAB13|cell growth-inhibiting gene 4 protein|growth-inhibiting gene 4 protein|ras-related protein Rab-13 20121230 -9606 5873 RAB27A - GS2|HsT18676|RAB27|RAM HGNC:9766|MIM:603868|Ensembl:ENSG00000069974|HPRD:04845|Vega:OTTHUMG00000131959 15 15q15-q21.1 RAB27A, member RAS oncogene family protein-coding RAB27A RAB27A, member RAS oncogene family O GTP-binding protein Ram|rab-27|ras-related protein Rab-27A 20121230 -9606 5874 RAB27B - C25KG HGNC:9767|MIM:603869|Ensembl:ENSG00000041353|HPRD:04846|Vega:OTTHUMG00000132710 18 18q21.2 RAB27B, member RAS oncogene family protein-coding RAB27B RAB27B, member RAS oncogene family O ras-related protein Rab-27B 20121230 -9606 5875 RABGGTA - PTAR3 HGNC:9795|MIM:601905|Ensembl:ENSG00000100949|HPRD:03547|Vega:OTTHUMG00000171838 14 14q11.2 Rab geranylgeranyltransferase, alpha subunit protein-coding RABGGTA Rab geranylgeranyltransferase, alpha subunit O Rab GG transferase alpha|Rab GGTase alpha|geranylgeranyl transferase type II subunit alpha|geranylgeranyl transferase type-2 subunit alpha|protein prenyltransferase alpha subunit repeat containing 3|rab geranyl-geranyltransferase subunit alpha 20121230 -9606 5876 RABGGTB RP4-682C21.3 GGTB HGNC:9796|MIM:179080|Ensembl:ENSG00000137955|HPRD:01532|Vega:OTTHUMG00000009786 1 1p31 Rab geranylgeranyltransferase, beta subunit protein-coding RABGGTB Rab geranylgeranyltransferase, beta subunit O GGTase-II-beta|geranylgeranyl transferase type II subunit beta|geranylgeranyl transferase type-2 subunit beta|rab GG transferase beta|rab GGTase beta|rab geranyl-geranyltransferase subunit beta|rab geranylgeranyltransferase subunit beta|type II protein geranyl-geranyltransferase subunit beta 20121230 -9606 5877 RABIF - MSS4|RASGFR3|RASGRF3 HGNC:9797|MIM:603417|Ensembl:ENSG00000183155|HPRD:04566|Vega:OTTHUMG00000041400 1 1q32.1 RAB interacting factor protein-coding RABIF RAB interacting factor O Ras-specific guanine-releasing factor 3|guanine nucleotide exchange factor MSS4|mammalian suppressor of SEC4|rab-interacting factor 20121230 -9606 5878 RAB5C - L1880|RAB5CL|RAB5L|RABL HGNC:9785|MIM:604037|Ensembl:ENSG00000108774|HPRD:04947|Vega:OTTHUMG00000169703 17 17q21.2 RAB5C, member RAS oncogene family protein-coding RAB5C RAB5C, member RAS oncogene family O RAB5C, member of RAS oncogene family|ras-related protein Rab-5C 20121230 -9606 5879 RAC1 MIG5 Rac-1|TC-25|p21-Rac1 HGNC:9801|MIM:602048|Ensembl:ENSG00000136238|HPRD:03627|Vega:OTTHUMG00000023540 7 7p22 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) O cell migration-inducing gene 5 protein|ras-like protein TC25|ras-related C3 botulinum toxin substrate 1 20121230 -9606 5880 RAC2 - EN-7|Gx|HSPC022 HGNC:9802|MIM:602049|Ensembl:ENSG00000128340|HPRD:03628|Vega:OTTHUMG00000150540 22 22q13.1 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) protein-coding RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) O Ras-related C3 botulinum toxin substrate 3 (rho family, small GTP-binding protein Rac2)|p21-Rac2|ras-related C3 botulinum toxin substrate 2|rho family, small GTP binding protein Rac2|small G protein 20121230 -9606 5881 RAC3 - - HGNC:9803|MIM:602050|Ensembl:ENSG00000169750|HPRD:03629|Vega:OTTHUMG00000178455 17 17q25.3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) protein-coding RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) O p21-Rac3|ras-related C3 botulinum toxin substrate 3|rho family, small GTP binding protein Rac3 20121230 -9606 5883 RAD9A - RAD9 HGNC:9827|MIM:603761|Ensembl:ENSG00000172613|HPRD:04788|Vega:OTTHUMG00000167670 11 11q13.1-q13.2 RAD9 homolog A (S. pombe) protein-coding RAD9A RAD9 homolog A (S. pombe) O DNA repair exonuclease rad9 homolog A|cell cycle checkpoint control protein RAD9A|hRAD9 20121230 -9606 5884 RAD17 - CCYC|HRAD17|R24L|RAD17SP|RAD24 HGNC:9807|MIM:603139|Ensembl:ENSG00000152942|HPRD:09124|Vega:OTTHUMG00000099357 5 5q13 RAD17 homolog (S. pombe) protein-coding RAD17 RAD17 homolog (S. pombe) O RAD1 homolog|RF-C activator 1 homolog|RF-C/activator 1 homolog|Rad17-like protein|cell cycle checkpoint protein (RAD17)|cell cycle checkpoint protein RAD17 20121230 -9606 5885 RAD21 - CDLS4|HR21|HRAD21|MCD1|NXP1|SCC1|hHR21 HGNC:9811|MIM:606462|Ensembl:ENSG00000164754|HPRD:05924|Vega:OTTHUMG00000164959 8 8q24 RAD21 homolog (S. pombe) protein-coding RAD21 RAD21 homolog (S. pombe) O NXP-1|SCC1 homolog|double-strand-break repair protein rad21 homolog|nuclear matrix protein 1|protein involved in DNA double-strand break repair 20121230 -9606 5886 RAD23A - HHR23A|HR23A HGNC:9812|MIM:600061|Ensembl:ENSG00000179262|HPRD:07191|Vega:OTTHUMG00000180723 19 19p13.2 RAD23 homolog A (S. cerevisiae) protein-coding RAD23A RAD23 homolog A (S. cerevisiae) O RAD23, yeast homolog, A|UV excision repair protein RAD23 homolog A 20121230 -9606 5887 RAD23B RP11-131A5.1 HHR23B|HR23B|P58 HGNC:9813|MIM:600062|Ensembl:ENSG00000119318|HPRD:06772|Vega:OTTHUMG00000020446 9 9q31.2 RAD23 homolog B (S. cerevisiae) protein-coding RAD23B RAD23 homolog B (S. cerevisiae) O RAD23, yeast homolog of, B|UV excision repair protein RAD23 homolog B|XP-C repair complementing complex 58 kDa|XP-C repair complementing protein|XP-C repair-complementing complex 58 kDa protein 20121230 -9606 5888 RAD51 - BRCC5|HRAD51|HsRad51|HsT16930|MRMV2|RAD51A|RECA HGNC:9817|MIM:179617|Ensembl:ENSG00000051180|HPRD:01557|Vega:OTTHUMG00000130067 15 15q15.1 RAD51 homolog (S. cerevisiae) protein-coding RAD51 RAD51 homolog (S. cerevisiae) O BRCA1/BRCA2-containing complex, subunit 5|DNA repair protein RAD51 homolog 1|RAD51 homolog (RecA homolog, E. coli)|RAD51 homolog A|RecA, E. coli, homolog of|RecA-like protein|recombination protein A 20121230 -9606 5889 RAD51C - BROVCA3|FANCO|RAD51L2 HGNC:9820|MIM:602774|Ensembl:ENSG00000108384|HPRD:04143|Vega:OTTHUMG00000141292 17 17q25.1 RAD51 homolog C (S. cerevisiae) protein-coding RAD51C RAD51 homolog C (S. cerevisiae) O DNA repair protein RAD51 homolog 3|R51H3|RAD51 homolog C|RAD51-like protein 2|yeast RAD51 homolog 3 20121230 -9606 5890 RAD51B - R51H2|RAD51L1|REC2 HGNC:9822|MIM:602948|Ensembl:ENSG00000182185|HPRD:04255|Vega:OTTHUMG00000157530 14 14q23-q24.2 RAD51 homolog B (S. cerevisiae) protein-coding RAD51B RAD51 homolog B (S. cerevisiae) O DNA repair protein RAD51 homolog 2|RecA-like protein|recombination repair protein 20121230 -9606 5891 MOK - RAGE|RAGE-1|RAGE1 HGNC:9833|MIM:605762|Ensembl:ENSG00000080823|HPRD:09310|Vega:OTTHUMG00000164896 14 14q32 MOK protein kinase protein-coding MOK MOK protein kinase O MAPK/MAK/MRK overlapping kinase|renal cell carcinoma antigen|renal tumor antigen 1 20121230 -9606 5892 RAD51D - BROVCA4|R51H3|RAD51L3|TRAD HGNC:9823|MIM:602954|Ensembl:ENSG00000185379|HPRD:04261|Vega:OTTHUMG00000132930 17 17q11 RAD51 homolog D (S. cerevisiae) protein-coding RAD51D RAD51 homolog D (S. cerevisiae) O DNA repair protein RAD51 homolog 4|RAD51-like protein 3|recombination repair protein 20121230 -9606 5893 RAD52 - - HGNC:9824|MIM:600392|Ensembl:ENSG00000002016|HPRD:11855|Vega:OTTHUMG00000090361 12 12p13-p12.2 RAD52 homolog (S. cerevisiae) protein-coding RAD52 RAD52 homolog (S. cerevisiae) O DNA repair protein RAD52 homolog|recombination protein RAD52|rhabdomyosarcoma antigen MU-RMS-40.23 20121230 -9606 5894 RAF1 - CRAF|NS5|Raf-1|c-Raf HGNC:9829|MIM:164760|Ensembl:ENSG00000132155|HPRD:01265|Vega:OTTHUMG00000129789 3 3p25 v-raf-1 murine leukemia viral oncogene homolog 1 protein-coding RAF1 v-raf-1 murine leukemia viral oncogene homolog 1 O Oncogene RAF1|RAF proto-oncogene serine/threonine-protein kinase|proto-oncogene c-RAF|raf proto-oncogene serine/threonine protein kinase 20121230 -9606 5896 RAG1 - RAG-1|RNF74 HGNC:9831|MIM:179615|Ensembl:ENSG00000166349|HPRD:01556|Vega:OTTHUMG00000166392 11 11p13 recombination activating gene 1 protein-coding RAG1 recombination activating gene 1 O RING finger protein 74|V(D)J recombination-activating protein 1|recombination activating protein 1 20121230 -9606 5897 RAG2 - RAG-2 HGNC:9832|MIM:179616|Ensembl:ENSG00000175097|HPRD:08913|Vega:OTTHUMG00000166393 11 11p13 recombination activating gene 2 protein-coding RAG2 recombination activating gene 2 O V(D)J recombination-activating protein 2 20121230 -9606 5898 RALA - RAL HGNC:9839|MIM:179550|Ensembl:ENSG00000006451|HPRD:01549|Vega:OTTHUMG00000128775 7 7p15-p13 v-ral simian leukemia viral oncogene homolog A (ras related) protein-coding RALA v-ral simian leukemia viral oncogene homolog A (ras related) O RAS-like protein A|Ras family small GTP binding protein RALA|ras-related protein Ral-A 20121230 -9606 5899 RALB - - HGNC:9840|MIM:179551|Ensembl:ENSG00000144118|HPRD:01550|Vega:OTTHUMG00000131435 2 2q14.2 v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) protein-coding RALB v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) O RAS-like protein B|ras-related protein Ral-B 20121230 -9606 5900 RALGDS RP11-326L24.1 RGDS|RGF|RalGEF HGNC:9842|MIM:601619|Ensembl:ENSG00000160271|HPRD:03371|Vega:OTTHUMG00000020858 9 9q34.3 ral guanine nucleotide dissociation stimulator protein-coding RALGDS ral guanine nucleotide dissociation stimulator O ral guanine nucleotide exchange factor 20121230 -9606 5901 RAN OK/SW-cl.81 ARA24|Gsp1|TC4 HGNC:9846|MIM:601179|Ensembl:ENSG00000132341|HPRD:03109|Vega:OTTHUMG00000134328 12 12q24.3 RAN, member RAS oncogene family protein-coding RAN RAN, member RAS oncogene family O GTP-binding nuclear protein Ran|GTPase Ran|OK/SW-cl.81|RanGTPase|androgen receptor-associated protein 24|guanosine triphosphatase Ran|member RAS oncogene family|ras-like protein TC4|ras-related nuclear protein 20121230 -9606 5902 RANBP1 - HTF9A HGNC:9847|MIM:601180|Ensembl:ENSG00000099901|HPRD:03110|Vega:OTTHUMG00000150490 22 22q11.21 RAN binding protein 1 protein-coding RANBP1 RAN binding protein 1 O ran-binding protein 1|ran-specific GTPase-activating protein 20121230 -9606 5903 RANBP2 - ANE1|IIAE3|NUP358|TRP1|TRP2 HGNC:9848|MIM:601181|Ensembl:ENSG00000153201|HPRD:03111|Vega:OTTHUMG00000130981 2 2q12.3 RAN binding protein 2 protein-coding RANBP2 RAN binding protein 2 O 358 kDa nucleoporin|E3 SUMO-protein ligase RanBP2|P270|nuclear pore complex protein Nup358|nucleoporin 358|nucleoporin Nup358|ran-binding protein 2|transformation-related protein 2 20121230 -9606 5905 RANGAP1 RP4-756G23.7 Fug1|SD HGNC:9854|MIM:602362|Ensembl:ENSG00000100401|HPRD:03839|Vega:OTTHUMG00000150940 22 22q13 Ran GTPase activating protein 1 protein-coding RANGAP1 Ran GTPase activating protein 1 O ran GTPase-activating protein 1|segregation distorter homolog|segregation distortion 20121230 -9606 5906 RAP1A - KREV-1|KREV1|RAP1|SMGP21 HGNC:9855|MIM:179520|Ensembl:ENSG00000116473|HPRD:01545|Vega:OTTHUMG00000011959 1 1p13.3 RAP1A, member of RAS oncogene family protein-coding RAP1A RAP1A, member of RAS oncogene family O C21KG|G-22K|GTP-binding protein smg p21A|RAS-related protein RAP1A|Ras-related protein Krev-1|ras-related protein Rap-1A 20121230 -9606 5907 RAP1AP - KREV1P|SMGP21A HGNC:9856 14 14q24.3 RAP1A, member of RAS oncogene family pseudogene pseudo RAP1AP RAP1A, member of RAS oncogene family pseudogene O - 20121230 -9606 5908 RAP1B OK/SW-cl.11 K-REV|RAL1B HGNC:9857|MIM:179530|Ensembl:ENSG00000127314|HPRD:01546|Vega:OTTHUMG00000133660 12 12q14 RAP1B, member of RAS oncogene family protein-coding RAP1B RAP1B, member of RAS oncogene family O GTP-binding protein smg p21B|RAS-related protein RAP1B|Ras family small GTP binding protein RAP1B|ras-related protein Rap-1b|small GTP binding protein 20121230 -9606 5909 RAP1GAP RP11-63N8.1 RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP HGNC:9858|MIM:600278|Ensembl:ENSG00000076864|HPRD:02609|Vega:OTTHUMG00000007513 1 1p36.1-p35 RAP1 GTPase activating protein protein-coding RAP1GAP RAP1 GTPase activating protein O rap1 GTPase-activating protein 1 20121230 -9606 5910 RAP1GDS1 - GDS1|SmgGDS HGNC:9859|MIM:179502|Ensembl:ENSG00000138698|HPRD:11763|Vega:OTTHUMG00000160987 4 4q23-q25 RAP1, GTP-GDP dissociation stimulator 1 protein-coding RAP1GDS1 RAP1, GTP-GDP dissociation stimulator 1 O SMG GDS protein|SMG P21 stimulatory GDP/GTP exchange protein|exchange factor smgGDS|rap1 GTPase-GDP dissociation stimulator 1 20121230 -9606 5911 RAP2A RP11-128N14.2 K-REV|KREV|RAP2|RbBP-30 HGNC:9861|MIM:179540|Ensembl:ENSG00000125249|HPRD:01547|Vega:OTTHUMG00000017240 13 13q34 RAP2A, member of RAS oncogene family protein-coding RAP2A RAP2A, member of RAS oncogene family O RAP2, member of RAS oncogene family (K-rev)|ras-related protein Rap-2a 20121230 -9606 5912 RAP2B - - HGNC:9862|MIM:179541|Ensembl:ENSG00000181467|HPRD:01548|Vega:OTTHUMG00000159655 3 3q25.2 RAP2B, member of RAS oncogene family protein-coding RAP2B RAP2B, member of RAS oncogene family O Ras family small GTP binding protein RAP2B|ras-related protein Rap-2b|small GTP binding protein 20121230 -9606 5913 RAPSN - RAPSYN|RNF205 HGNC:9863|MIM:601592|Ensembl:ENSG00000165917|HPRD:03353|Vega:OTTHUMG00000166891 11 11p11.2 receptor-associated protein of the synapse protein-coding RAPSN receptor-associated protein of the synapse O 43 kDa receptor-associated protein of the synapse|43 kda postsynaptic protein|RING finger protein 205|acetylcholine receptor-associated 43 kda protein 20121230 -9606 5914 RARA - NR1B1|RAR HGNC:9864|MIM:180240|Ensembl:ENSG00000131759|HPRD:06769|Vega:OTTHUMG00000133328 17 17q21 retinoic acid receptor, alpha protein-coding RARA retinoic acid receptor, alpha O RAR-alpha|nuclear receptor subfamily 1 group B member 1|nucleophosmin-retinoic acid receptor alpha fusion protein NPM-RAR long form|retinoic acid nuclear receptor alpha variant 1|retinoic acid nuclear receptor alpha variant 2|retinoic acid receptor alpha|retinoic acid receptor, alpha polypeptide 20121230 -9606 5915 RARB - HAP|NR1B2|RRB2 HGNC:9865|MIM:180220|Ensembl:ENSG00000077092|HPRD:07183|Vega:OTTHUMG00000130480 3 3p24.2 retinoic acid receptor, beta protein-coding RARB retinoic acid receptor, beta O HBV-activated protein|RAR-beta|RAR-epsilon|hepatitis B virus activated protein|nuclear receptor subfamily 1 group B member 2|retinoic acid receptor beta|retinoic acid receptor beta 2|retinoic acid receptor beta 4|retinoic acid receptor beta 5|retinoic acid receptor beta variant 1|retinoic acid receptor beta variant 2|retinoic acid receptor, beta polypeptide 20121230 -9606 5916 RARG - NR1B3|RARC HGNC:9866|MIM:180190|Ensembl:ENSG00000172819|HPRD:01573|Vega:OTTHUMG00000048077 12 12q13 retinoic acid receptor, gamma protein-coding RARG retinoic acid receptor, gamma O RAR-gamma|nuclear receptor subfamily 1 group B member 3|retinoic acid nuclear receptor gamma variant 1|retinoic acid nuclear receptor gamma variant 2|retinoic acid receptor gamma 20121230 -9606 5917 RARS - ArgRS|DALRD1 HGNC:9870|MIM:107820|Ensembl:ENSG00000113643|HPRD:00142|Vega:OTTHUMG00000130411 5 5q35.1 arginyl-tRNA synthetase protein-coding RARS arginyl-tRNA synthetase O arginine tRNA ligase 1, cytoplasmic|arginine--tRNA ligase, cytoplasmic|arginyl-tRNA synthetase, cytoplasmic 20121230 -9606 5918 RARRES1 - TIG1 HGNC:9867|MIM:605090|Ensembl:ENSG00000118849|HPRD:05477|Vega:OTTHUMG00000158834 3 3q25.32 retinoic acid receptor responder (tazarotene induced) 1 protein-coding RARRES1 retinoic acid receptor responder (tazarotene induced) 1 O RAR-responsive protein TIG1|retinoic acid receptor responder protein 1|tazarotene-induced gene 1 protein 20121230 -9606 5919 RARRES2 - HP10433|TIG2 HGNC:9868|MIM:601973|Ensembl:ENSG00000106538|HPRD:03577|Vega:OTTHUMG00000158325 7 7q36.1 retinoic acid receptor responder (tazarotene induced) 2 protein-coding RARRES2 retinoic acid receptor responder (tazarotene induced) 2 O RAR-responsive protein TIG2|chemerin|retinoic acid receptor responder protein 2|tazarotene-induced gene 2 protein 20121230 -9606 5920 RARRES3 - HRASLS4|PLA1/2-3|RIG1|TIG3 HGNC:9869|MIM:605092|Ensembl:ENSG00000133321|HPRD:05479|Vega:OTTHUMG00000167850 11 11q23 retinoic acid receptor responder (tazarotene induced) 3 protein-coding RARRES3 retinoic acid receptor responder (tazarotene induced) 3 O RAR-responsive protein TIG3|retinoic acid receptor responder protein 3|retinoic acid-inducible gene 1|retinoid-inducible gene 1 protein|tazarotene-induced gene 3 protein 20121230 -9606 5921 RASA1 - CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP HGNC:9871|MIM:139150|Ensembl:ENSG00000145715|HPRD:00745|Vega:OTTHUMG00000162605 5 5q13.3 RAS p21 protein activator (GTPase activating protein) 1 protein-coding RASA1 RAS p21 protein activator (GTPase activating protein) 1 O ras GTPase-activating protein 1|triphosphatase-activating protein 20121230 -9606 5922 RASA2 - GAP1M HGNC:9872|MIM:601589|Ensembl:ENSG00000155903|Vega:OTTHUMG00000160221 3 3q22-q23 RAS p21 protein activator 2 protein-coding RASA2 RAS p21 protein activator 2 O GTPase-activating protein of RAS|ras GTPase-activating protein 2 20121230 -9606 5923 RASGRF1 - CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 HGNC:9875|MIM:606600|Ensembl:ENSG00000058335|Vega:OTTHUMG00000144172 15 15q24.2 Ras protein-specific guanine nucleotide-releasing factor 1 protein-coding RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 O Ras-specific guanine nucleotide-releasing factor, CDC25 homolog|Ras-specific nucleotide exchange factor CDC25|guanine nucleotide exchange factor|guanine nucleotide-releasing factor 1|guanine nucleotide-releasing factor, 55 kD|guanine nucleotide-releasing protein|ras-specific guanine nucleotide-releasing factor 1 20121230 -9606 5924 RASGRF2 - GRF2|RAS-GRF2 HGNC:9876|MIM:606614|Ensembl:ENSG00000113319|HPRD:07588|Vega:OTTHUMG00000119015 5 5q13 Ras protein-specific guanine nucleotide-releasing factor 2 protein-coding RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2 O ras guanine nucleotide exchange factor 2|ras-specific guanine nucleotide-releasing factor 2 20121230 -9606 5925 RB1 RP11-174I10.1 OSRC|RB|p105-Rb|pRb|pp110 HGNC:9884|MIM:614041|Ensembl:ENSG00000139687|HPRD:01574|Vega:OTTHUMG00000016900 13 13q14.2 retinoblastoma 1 protein-coding RB1 retinoblastoma 1 O retinoblastoma suspectibility protein|retinoblastoma-associated protein 20121230 -9606 5926 ARID4A - RBBP-1|RBBP1|RBP-1|RBP1 HGNC:9885|MIM:180201|Ensembl:ENSG00000032219|HPRD:01575|Vega:OTTHUMG00000140320 14 14q23.1 AT rich interactive domain 4A (RBP1-like) protein-coding ARID4A AT rich interactive domain 4A (RBP1-like) O ARID domain-containing protein 4A|AT-rich interactive domain-containing protein 4A|retinoblastoma binding protein 1|retinoblastoma-binding protein 1 20121230 -9606 5927 KDM5A - JARID1A|RBBP-2|RBBP2|RBP2 HGNC:9886|MIM:180202|Ensembl:ENSG00000073614|HPRD:08915|Vega:OTTHUMG00000168055 12 12p11 lysine (K)-specific demethylase 5A protein-coding KDM5A lysine (K)-specific demethylase 5A O Jumonji, AT rich interactive domain 1A (RBBP2-like)|Jumonji, AT rich interactive domain 1A (RBP2-like)|histone demethylase JARID1A|jumonji/ARID domain-containing protein 1A|lysine-specific demethylase 5A|retinoblastoma binding protein 2|retinoblastoma-binding protein 2 20121230 -9606 5928 RBBP4 - NURF55|RBAP48 HGNC:9887|MIM:602923|Ensembl:ENSG00000162521|HPRD:04232|Vega:OTTHUMG00000007998 1 1p35.1 retinoblastoma binding protein 4 protein-coding RBBP4 retinoblastoma binding protein 4 O CAF-1 subunit C|CAF-I 48 kDa subunit|CAF-I p48|MSI1 protein homolog|RBBP-4|chromatin assembly factor 1 subunit C|chromatin assembly factor I p48 subunit|chromatin assembly factor/CAF-1 p48 subunit|histone-binding protein RBBP4|nucleosome-remodeling factor subunit RBAP48|retinoblastoma-binding protein 4|retinoblastoma-binding protein p48 20121230 -9606 5929 RBBP5 - RBQ3|SWD1 HGNC:9888|MIM:600697|Ensembl:ENSG00000117222|HPRD:02826|Vega:OTTHUMG00000037104 1 1q32 retinoblastoma binding protein 5 protein-coding RBBP5 retinoblastoma binding protein 5 O RBBP-5|SWD1, Set1c WD40 repeat protein, homolog|retinoblastoma-binding protein 5|retinoblastoma-binding protein RBQ-3 20121230 -9606 5930 RBBP6 My038 MY038|P2P-R|PACT|RBQ-1|SNAMA HGNC:9889|MIM:600938|Ensembl:ENSG00000122257|HPRD:02964|Vega:OTTHUMG00000096991 16 16p12.2 retinoblastoma binding protein 6 protein-coding RBBP6 retinoblastoma binding protein 6 O E3 ubiquitin-protein ligase RBBP6|RB-binding Q-protein 1|p53-associated cellular protein of testis|proliferation potential-related protein|protein P2P-R|retinoblastoma-binding Q protein 1|retinoblastoma-binding protein 6 20121230 -9606 5931 RBBP7 RP11-716A19.5 RbAp46 HGNC:9890|MIM:300825|Ensembl:ENSG00000102054|HPRD:04231|Vega:OTTHUMG00000021198 X Xp22.2 retinoblastoma binding protein 7 protein-coding RBBP7 retinoblastoma binding protein 7 O G1/S transition control protein-binding protein RbAp46|RBBP-7|histone acetyltransferase type B subunit 2|histone-binding protein RBBP7|nucleosome-remodeling factor subunit RBAP46|retinoblastoma-binding protein 7|retinoblastoma-binding protein RbAp46|retinoblastoma-binding protein p46 20121230 -9606 5932 RBBP8 - COM1|CTIP|JWDS|RIM|SAE2|SCKL2 HGNC:9891|MIM:604124|Ensembl:ENSG00000101773|HPRD:04990|Vega:OTTHUMG00000131769 18 18q11.2 retinoblastoma binding protein 8 protein-coding RBBP8 retinoblastoma binding protein 8 O CTBP-interacting protein|DNA endonuclease RBBP8|RBBP-8|sporulation in the absence of SPO11 protein 2 homolog 20121230 -9606 5933 RBL1 RP11-382A12.1 CP107|PRB1|p107 HGNC:9893|MIM:116957|Ensembl:ENSG00000080839|HPRD:00312|Vega:OTTHUMG00000032406 20 20q11.2 retinoblastoma-like 1 (p107) protein-coding RBL1 retinoblastoma-like 1 (p107) O 107 kDa retinoblastoma-associated protein|cellular protein 107|retinoblastoma-like protein 1 20121230 -9606 5934 RBL2 - P130|Rb2 HGNC:9894|MIM:180203|Ensembl:ENSG00000103479|HPRD:01576|Vega:OTTHUMG00000133198 16 16q12.2 retinoblastoma-like 2 (p130) protein-coding RBL2 retinoblastoma-like 2 (p130) O 130 kDa retinoblastoma-associated protein|PRB2|RBR-2|retinoblastoma-like protein 2|retinoblastoma-related protein 2 20121230 -9606 5935 RBM3 - IS1-RNPL|RNPL HGNC:9900|MIM:300027|Ensembl:ENSG00000102317|HPRD:02067|Vega:OTTHUMG00000024121 X Xp11.2 RNA binding motif (RNP1, RRM) protein 3 protein-coding RBM3 RNA binding motif (RNP1, RRM) protein 3 O RNA-binding motif protein 3|putative RNA-binding protein 3 20121230 -9606 5936 RBM4 - LARK|RBM4A|ZCCHC21|ZCRB3A HGNC:9901|MIM:602571|Ensembl:ENSG00000173933|Ensembl:ENSG00000248643|HPRD:03982|Vega:OTTHUMG00000154171 11 11q13 RNA binding motif protein 4 protein-coding RBM4 RNA binding motif protein 4 O RNA-binding motif protein 4a|RNA-binding protein 4|lark homolog|transcriptional coactivator CoAZ|zinc finger CCHC-type and RNA binding motif 3A 20121230 -9606 5937 RBMS1 - C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 HGNC:9907|MIM:602310|Ensembl:ENSG00000153250|HPRD:03814|Vega:OTTHUMG00000132031 2 2q24.2 RNA binding motif, single stranded interacting protein 1 protein-coding RBMS1 RNA binding motif, single stranded interacting protein 1 O RNA-binding motif, single-stranded-interacting protein 1|c-myc gene single strand binding protein 2|cervical cancer oncogene 4|single-stranded DNA-binding protein MSSP-1|suppressor of CDC2 with RNA-binding motif 2|suppressor of cdc 2 (cdc13) with RNA binding motif 2 20121230 -9606 5938 RBMS1P1 - MSSP1|RBMS1P HGNC:9908 12 12q14.3 RNA binding motif, single stranded interacting protein 1 pseudogene 1 pseudo RBMS1P1 RNA binding motif, single stranded interacting protein 1 pseudogene 1 O - 20121230 -9606 5939 RBMS2 - SCR3 HGNC:9909|MIM:602387|Ensembl:ENSG00000076067|HPRD:03860|Vega:OTTHUMG00000170488 12 12q13.3 RNA binding motif, single stranded interacting protein 2 protein-coding RBMS2 RNA binding motif, single stranded interacting protein 2 O RNA-binding motif, single-stranded-interacting protein 2|suppressor of CDC2 with RNA-binding motif 3 20121230 -9606 5940 RBMY1A1 - RBM|RBM1|RBM2|RBMY|RBMY1C|YRRM1|YRRM2 HGNC:9912|MIM:400006|Ensembl:ENSG00000234414|HPRD:02450|Vega:OTTHUMG00000043592 Y Yq11.223 RNA binding motif protein, Y-linked, family 1, member A1 protein-coding RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 O RNA binding motif protein, Y chromosome, family 1, member A1|RNA binding protein|RNA-binding motif protein 1|RNA-binding motif protein 2|RNA-binding motif protein, Y chromosome, family 1 member A1|RNA-binding motif protein, Y chromosome, family 1 member A1/C|y chromosome RNA recognition motif 1 20121230 -9606 5942 RBMY1C - - HGNC:9914 Y Yq11.23 RNA binding motif protein, Y-linked, family 1, member C protein-coding RBMY1C RNA binding motif protein, Y-linked, family 1, member C O RNA binding motif protein, Y chromosome, family 1, member C|RNA-binding motif protein, Y chromosome, family 1 member C 20120610 -9606 5944 RBMY1HP - RBMY1H|YRRM HGNC:9916 Y Yq11.223 RNA binding motif protein, Y-linked, family 1, member H, pseudogene pseudo RBMY1HP RNA binding motif protein, Y-linked, family 1, member H, pseudogene O - 20121209 -9606 5945 RBMY2AP - RBMY2A HGNC:9917 Y Yq11.23 RNA binding motif protein, Y-linked, family 2, member A pseudogene pseudo RBMY2AP RNA binding motif protein, Y-linked, family 2, member A pseudogene O - 20121209 -9606 5947 RBP1 - CRABP-I|CRBP|CRBP1|CRBPI|RBPC HGNC:9919|MIM:180260|Ensembl:ENSG00000114115|HPRD:07036|Vega:OTTHUMG00000155751 3 3q23 retinol binding protein 1, cellular protein-coding RBP1 retinol binding protein 1, cellular O CRBP-I|cellular retinol-binding protein I|retinol-binding protein 1|retinol-binding protein 1, cellular 20121230 -9606 5948 RBP2 - CRABP-II|CRBP2|CRBPII|RBPC2 HGNC:9920|MIM:180280|Ensembl:ENSG00000114113|HPRD:07184|Vega:OTTHUMG00000159956 3 3q23 retinol binding protein 2, cellular protein-coding RBP2 retinol binding protein 2, cellular O CRBP-II|cellular retinol-binding protein II|retinol-binding protein 2|retinol-binding protein 2, cellular 20121230 -9606 5949 RBP3 - D10S64|D10S65|D10S66|IRBP|RBPI HGNC:9921|MIM:180290|Ensembl:ENSG00000107618|HPRD:01581|Vega:OTTHUMG00000018147 10 10q11.2 retinol binding protein 3, interstitial protein-coding RBP3 retinol binding protein 3, interstitial O interphotoreceptor retinoid-binding protein|retinol-binding protein 3 20121230 -9606 5950 RBP4 PRO2222 - HGNC:9922|MIM:180250|Ensembl:ENSG00000138207|HPRD:01580|Vega:OTTHUMG00000018773 10 10q23-q24 retinol binding protein 4, plasma protein-coding RBP4 retinol binding protein 4, plasma O PRBP|RBP|plasma retinol-binding protein|retinol-binding protein 4|retinol-binding protein 4, interstitial 20121230 -9606 5953 RCD1 - - HGNC:9930|MIM:180020 6 6q25-q26 retinal cone dystrophy 1 unknown RCD1 retinal cone dystrophy 1 O - 20110215 -9606 5954 RCN1 - PIG20|RCAL|RCN HGNC:9934|MIM:602735|Ensembl:ENSG00000049449|HPRD:04111|Vega:OTTHUMG00000166227 11 11p13 reticulocalbin 1, EF-hand calcium binding domain protein-coding RCN1 reticulocalbin 1, EF-hand calcium binding domain O proliferation-inducing gene 20|reticulocalbin-1 20121230 -9606 5955 RCN2 - E6BP|ERC-55|ERC55|TCBP49 HGNC:9935|MIM:602584|Ensembl:ENSG00000117906|HPRD:03993|Vega:OTTHUMG00000143730 15 15q23 reticulocalbin 2, EF-hand calcium binding domain protein-coding RCN2 reticulocalbin 2, EF-hand calcium binding domain O E6-binding protein|calcium-binding protein ERC-55|reticulocalbin 2, EF-hand calcium binding domain (endoplasmic reticulum calcium-binding protein, 55kD)|reticulocalbin-2 20121230 -9606 5956 OPN1LW hCG_41347 CBBM|CBP|COD5|RCP|ROP HGNC:9936|MIM:300822|Ensembl:ENSG00000102076|HPRD:02366|Vega:OTTHUMG00000034295 X Xq28 opsin 1 (cone pigments), long-wave-sensitive protein-coding OPN1LW opsin 1 (cone pigments), long-wave-sensitive O cone dystrophy 5 (X-linked)|long-wave-sensitive opsin 1|red cone photoreceptor pigment|red-sensitive opsin 20121230 -9606 5957 RCVRN - RCV1 HGNC:9937|MIM:179618|Ensembl:ENSG00000109047|HPRD:01558|Vega:OTTHUMG00000130268 17 17p13.1 recoverin protein-coding RCVRN recoverin O cancer associated retinopathy antigen|cancer-associated retinopathy protein 20121230 -9606 5959 RDH5 - 9cRDH|HSD17B9|RDH1|SDR9C5 HGNC:9940|MIM:601617|Ensembl:ENSG00000135437|HPRD:03370|Vega:OTTHUMG00000170126 12 12q13-q14 retinol dehydrogenase 5 (11-cis/9-cis) protein-coding RDH5 retinol dehydrogenase 5 (11-cis/9-cis) O 11-cis RDH|11-cis RoDH|11-cis retinol dehydrogenase|9-cis retinol dehydrogenase|9-cis-retinol specific dehydrogenase|retinol dehydrogenase 1|retinol dehydrogenase 5 (11-cis and 9-cis)|short chain dehydrogenase/reductase family 9C, member 5 20121230 -9606 5961 PRPH2 - AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2 HGNC:9942|MIM:179605|Ensembl:ENSG00000112619|HPRD:01553|Vega:OTTHUMG00000014701 6 6p21.2-p12.3 peripherin 2 (retinal degeneration, slow) protein-coding PRPH2 peripherin 2 (retinal degeneration, slow) O peripherin 2, homolog of mouse|peripherin, photoreceptor type|peripherin-2|retinal degeneration slow protein|retinal peripherin|tetraspanin-22|tspan-22 20121230 -9606 5962 RDX - DFNB24 HGNC:9944|MIM:179410|Ensembl:ENSG00000137710|HPRD:01534|Vega:OTTHUMG00000166574 11 11q23 radixin protein-coding RDX radixin O - 20121230 -9606 5964 RDXP2 - - HGNC:9946 X Xp22 radixin pseudogene 2 pseudo RDXP2 radixin pseudogene 2 O - 20121230 -9606 5965 RECQL - RECQL1|RecQ1 HGNC:9948|MIM:600537|Ensembl:ENSG00000004700|HPRD:02762|Vega:OTTHUMG00000169131 12 12p12 RecQ protein-like (DNA helicase Q1-like) protein-coding RECQL RecQ protein-like (DNA helicase Q1-like) O ATP-dependent DNA helicase Q1|DNA helicase, RecQ-like type 1|DNA-dependent ATPase Q1|recQ protein-like 1 20121230 -9606 5966 REL - C-Rel HGNC:9954|MIM:164910|Ensembl:ENSG00000162924|HPRD:01286|Vega:OTTHUMG00000129418 2 2p13-p12 v-rel reticuloendotheliosis viral oncogene homolog (avian) protein-coding REL v-rel reticuloendotheliosis viral oncogene homolog (avian) O C-Rel proto-oncogene protein|oncogene REL, avian reticuloendotheliosis|proto-oncogene c-Rel|v-rel avian reticuloendotheliosis viral oncogene homolog 20121230 -9606 5967 REG1A - ICRF|P19|PSP|PSPS|PSPS1|PTP|REG HGNC:9951|MIM:167770|Ensembl:ENSG00000115386|HPRD:01338|Vega:OTTHUMG00000130016 2 2p12 regenerating islet-derived 1 alpha protein-coding REG1A regenerating islet-derived 1 alpha O REG-1-alpha|islet cells regeneration factor|islet of langerhans regenerating protein|lithostathine 1 alpha|lithostathine-1-alpha|pancreatic stone protein, secretory|pancreatic thread protein|protein-X|regenerating islet-derived protein 1-alpha|regenerating protein I alpha 20121230 -9606 5968 REG1B - PSPS2|REGH|REGI-BETA|REGL HGNC:9952|MIM:167771|Ensembl:ENSG00000172023|HPRD:01339|Vega:OTTHUMG00000130019 2 2p12 regenerating islet-derived 1 beta protein-coding REG1B regenerating islet-derived 1 beta O PSP-2|REG-1-beta|lithostathine 1 beta|lithostathine-1-beta|pancreatic stone protein 2|regenerating islet-derived 1 beta (pancreatic stone protein, pancreatic thread protein)|regenerating islet-derived protein 1-beta|regenerating protein I beta|secretory pancreatic stone protein 2 20121230 -9606 5969 REG1P - REGL|RS HGNC:9953|HPRD:17965 2 2p12 regenerating islet-derived 1 pseudogene pseudo REG1P regenerating islet-derived 1 pseudogene O - 20121230 -9606 5970 RELA - NFKB3|p65 HGNC:9955|MIM:164014|Ensembl:ENSG00000173039|HPRD:01241|Vega:OTTHUMG00000166566 11 11q13 v-rel reticuloendotheliosis viral oncogene homolog A (avian) protein-coding RELA v-rel reticuloendotheliosis viral oncogene homolog A (avian) O NF-kappa-B p65delta3|nuclear factor NF-kappa-B p65 subunit|nuclear factor of kappa light polypeptide gene enhancer in B-cells 3|transcription factor p65 20121230 -9606 5971 RELB - I-REL|IREL|REL-B HGNC:9956|MIM:604758|Ensembl:ENSG00000104856|HPRD:06886|Vega:OTTHUMG00000162116 19 19q13.32 v-rel reticuloendotheliosis viral oncogene homolog B protein-coding RELB v-rel reticuloendotheliosis viral oncogene homolog B O transcription factor RelB|v-rel avian reticuloendotheliosis viral oncogene homolog B (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3)|v-rel reticuloendotheliosis viral oncogene homolog B, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 20121230 -9606 5972 REN - HNFJ2 HGNC:9958|MIM:179820|Ensembl:ENSG00000143839|HPRD:01564|Vega:OTTHUMG00000036059 1 1q32 renin protein-coding REN renin O angiotensin-forming enzyme|angiotensinogenase|renin precursor, renal 20121230 -9606 5973 RENBP - RBP|RNBP HGNC:9959|MIM:312420|Ensembl:ENSG00000102032|HPRD:02423|Vega:OTTHUMG00000024224 X Xq28 renin binding protein protein-coding RENBP renin binding protein O AGE|GlcNAc 2-epimerase|N-acetyl-D-glucosamine 2-epimerase|N-acylglucosamine 2-epimerase 20121230 -9606 5975 RENS2 - MRXS9 HGNC:9961 X Xq12-q21.31 Renpenning syndrome 2 (Renpenning-like syndrome) unknown RENS2 Renpenning syndrome 2 (Renpenning-like syndrome) O - 20110702 -9606 5976 UPF1 - HUPF1|NORF1|RENT1|pNORF1|smg-2 HGNC:9962|MIM:601430|Ensembl:ENSG00000005007|HPRD:03254 19 19p13.2-p13.11 UPF1 regulator of nonsense transcripts homolog (yeast) protein-coding UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) O ATP-dependent helicase RENT1|UP Frameshift 1|delta helicase|nonsense mRNA reducing factor 1|regulator of nonsense transcripts 1|smg-2 homolog, nonsense mediated mRNA decay factor|up-frameshift mutation 1 homolog|up-frameshift suppressor 1 homolog|yeast Upf1p homolog 20121230 -9606 5977 DPF2 - REQ|UBID4|ubi-d4 HGNC:9964|MIM:601671|Ensembl:ENSG00000133884|HPRD:03394|Vega:OTTHUMG00000165985 11 11q13 D4, zinc and double PHD fingers family 2 protein-coding DPF2 D4, zinc and double PHD fingers family 2 O BAF45D|BRG1-associated factor 45D|apoptosis response zinc finger protein|protein requiem|requiem, apoptosis response zinc finger|zinc finger protein ubi-d4 20121230 -9606 5978 REST - NRSF|XBR HGNC:9966|MIM:600571|Ensembl:ENSG00000084093|HPRD:08990|Vega:OTTHUMG00000128770 4 4q12 RE1-silencing transcription factor protein-coding REST RE1-silencing transcription factor O neural-restrictive silencer factor|neuron restrictive silencer factor|repressor binding to the X2 box 20121230 -9606 5979 RET - CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51 HGNC:9967|MIM:164761|Ensembl:ENSG00000165731|HPRD:01266|Vega:OTTHUMG00000018024 10 10q11.2 ret proto-oncogene protein-coding RET ret proto-oncogene O RET transforming sequence|cadherin family member 12|cadherin-related family member 16|hydroxyaryl-protein kinase|proto-oncogene c-Ret|proto-oncogene tyrosine-protein kinase receptor Ret|receptor tyrosine kinase|ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease) 20121230 -9606 5980 REV3L RP5-1112D6.1 POLZ|REV3 HGNC:9968|MIM:602776|Ensembl:ENSG00000009413|HPRD:04145|Vega:OTTHUMG00000016318 6 6q21 REV3-like, polymerase (DNA directed), zeta, catalytic subunit protein-coding REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit O DNA polymerase zeta catalytic subunit|Rev-3, yeast, homolog-like (polymerase, DNA, zeta)|hREV3 20121230 -9606 5981 RFC1 - A1|MHCBFB|PO-GA|RECC1|RFC|RFC140 HGNC:9969|MIM:102579|Ensembl:ENSG00000035928|HPRD:00024|Vega:OTTHUMG00000099363 4 4p14-p13 replication factor C (activator 1) 1, 145kDa protein-coding RFC1 replication factor C (activator 1) 1, 145kDa O A1 140 kDa subunit|DNA-binding protein PO-GA|MHC binding factor, beta|RF-C 140 kDa subunit|activator 1 140 kDa subunit|activator 1 large subunit|activator 1 subunit 1|replication factor C 140 kDa subunit|replication factor C large subunit|replication factor C subunit 1|replication factor C1 20121230 -9606 5982 RFC2 - A1|RFC40 HGNC:9970|MIM:600404|Ensembl:ENSG00000049541|HPRD:02675|Vega:OTTHUMG00000023239 7 7q11.23 replication factor C (activator 1) 2, 40kDa protein-coding RFC2 replication factor C (activator 1) 2, 40kDa O A1 40 kDa subunit|RF-C 40 kDa subunit|activator 1 40 kDa subunit|activator 1 subunit 2|replication factor C 2|replication factor C subunit 2 20121230 -9606 5983 RFC3 - RFC38 HGNC:9971|MIM:600405|Ensembl:ENSG00000133119|HPRD:02676|Vega:OTTHUMG00000016715 13 13q13.2 replication factor C (activator 1) 3, 38kDa protein-coding RFC3 replication factor C (activator 1) 3, 38kDa O A1 38 kDa subunit|RF-C 38 kDa subunit|RFC, 38 kD subunit|activator 1 38 kDa subunit|activator 1 subunit 3|replication factor C 38 kDa subunit|replication factor C subunit 3 20121230 -9606 5984 RFC4 - A1|RFC37 HGNC:9972|MIM:102577|Ensembl:ENSG00000163918|HPRD:00022|Vega:OTTHUMG00000156515 3 3q27 replication factor C (activator 1) 4, 37kDa protein-coding RFC4 replication factor C (activator 1) 4, 37kDa O A1 37 kDa subunit|RF-C 37 kDa subunit|RFC 37 kDa subunit|activator 1 37 kDa subunit|activator 1 subunit 4|replication factor C 37 kDa subunit|replication factor C subunit 4 20121230 -9606 5985 RFC5 - RFC36 HGNC:9973|MIM:600407|Ensembl:ENSG00000111445|HPRD:02677|Vega:OTTHUMG00000156438 12 12q24.23 replication factor C (activator 1) 5, 36.5kDa protein-coding RFC5 replication factor C (activator 1) 5, 36.5kDa O A1 36 kDa subunit|RF-C 36 kDa subunit|RFC, 36.5 kD subunit|replication factor C subunit 5|replication factor C, 36-kDa subunit 20121230 -9606 5986 RFNG - - HGNC:9974|MIM:602578|Ensembl:ENSG00000169733|HPRD:09093|Vega:OTTHUMG00000178512 17 17q25 RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding RFNG RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase O O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase|beta-1,3-N-acetylglucosaminyltransferase radical fringe|radical fringe homolog 20121230 -9606 5987 TRIM27 DAAP-182E11.3 RFP|RNF76 HGNC:9975|MIM:602165|Ensembl:ENSG00000204713|HPRD:15996|Vega:OTTHUMG00000031215 6 6p22 tripartite motif containing 27 protein-coding TRIM27 tripartite motif containing 27 O RFP transforming protein|RING finger protein 76|ret finger protein|tripartite motif protein TRIM27|tripartite motif-containing 27|tripartite motif-containing protein 27|zinc finger protein RFP 20121230 -9606 5988 RFPL1 - RNF78 HGNC:9977|MIM:605968|Ensembl:ENSG00000128250|HPRD:16182|Vega:OTTHUMG00000150516 22 22q12.2 ret finger protein-like 1 protein-coding RFPL1 ret finger protein-like 1 O RING finger protein 78 20121230 -9606 5989 RFX1 - EFC|RFX HGNC:9982|MIM:600006|Ensembl:ENSG00000132005|HPRD:02476|Vega:OTTHUMG00000181979 19 19p13.1 regulatory factor X, 1 (influences HLA class II expression) protein-coding RFX1 regulatory factor X, 1 (influences HLA class II expression) O MHC class II regulatory factor RFX|MHC class II regulatory factor RFX1|enhancer factor C|regulatory factor X 1|trans-acting regulatory factor 1|transcription factor RFX1 20121230 -9606 5990 RFX2 - - HGNC:9983|MIM:142765|Ensembl:ENSG00000087903|HPRD:00824|Vega:OTTHUMG00000180711 19 19p13.3 regulatory factor X, 2 (influences HLA class II expression) protein-coding RFX2 regulatory factor X, 2 (influences HLA class II expression) O DNA binding protein RFX2|DNA-binding protein RFX2|HLA class II regulatory factor RFX2|regulatory factor X 2|trans-acting regulatory factor 2 20121230 -9606 5991 RFX3 RP11-32F11.1 bA32F11.1 HGNC:9984|MIM:601337|Ensembl:ENSG00000080298|HPRD:03215|Vega:OTTHUMG00000019456 9 9p24.2 regulatory factor X, 3 (influences HLA class II expression) protein-coding RFX3 regulatory factor X, 3 (influences HLA class II expression) O DNA binding protein RFX3|regulatory factor X 3|transcription factor RFX3 20121230 -9606 5992 RFX4 - NYD-SP10 HGNC:9985|MIM:603958|Ensembl:ENSG00000111783|HPRD:04905|Vega:OTTHUMG00000169173 12 12q24 regulatory factor X, 4 (influences HLA class II expression) protein-coding RFX4 regulatory factor X, 4 (influences HLA class II expression) O testis development protein NYD-SP10|transcription factor RFX4|winged-helix transcription factor RFX4 20121230 -9606 5993 RFX5 RP11-126K1.5 - HGNC:9986|MIM:601863|Ensembl:ENSG00000143390|HPRD:03517|Vega:OTTHUMG00000012495 1 1q21 regulatory factor X, 5 (influences HLA class II expression) protein-coding RFX5 regulatory factor X, 5 (influences HLA class II expression) O DNA-binding protein RFX5|regulatory factor X 5 20121230 -9606 5994 RFXAP - - HGNC:9988|MIM:601861|Ensembl:ENSG00000133111|HPRD:03515|Vega:OTTHUMG00000016738 13 13q14 regulatory factor X-associated protein protein-coding RFXAP regulatory factor X-associated protein O RFX DNA-binding complex 36 kDa subunit|RFX-associated protein 20121230 -9606 5995 RGR - RP44 HGNC:9990|MIM:600342|Ensembl:ENSG00000148604|HPRD:02642|Vega:OTTHUMG00000018636 10 10q23 retinal G protein coupled receptor protein-coding RGR retinal G protein coupled receptor O RGR-opsin|RPE retinal G-protein coupled receptor|RPE-retinal G protein-coupled receptor 20121230 -9606 5996 RGS1 - 1R20|BL34|IER1|IR20 HGNC:9991|MIM:600323|Ensembl:ENSG00000090104|HPRD:15968|Vega:OTTHUMG00000035598 1 1q31 regulator of G-protein signaling 1 protein-coding RGS1 regulator of G-protein signaling 1 O B-cell activation protein BL34|early response protein 1R20|immediate-early response 1, B-cell specific|regulator of G-protein signalling 1 20121230 -9606 5997 RGS2 GIG31 G0S8 HGNC:9998|MIM:600861|Ensembl:ENSG00000116741|HPRD:02917|Vega:OTTHUMG00000035600 1 1q31 regulator of G-protein signaling 2, 24kDa protein-coding RGS2 regulator of G-protein signaling 2, 24kDa O G0 to G1 switch regulatory 8, 24kD|G0/G1 switch regulatory protein 8|cell growth-inhibiting gene 31 protein|cell growth-inhibiting protein 31|regulator of G-protein signaling 2 20121230 -9606 5998 RGS3 RP11-168K11.4 C2PA|PDZ-RGS3|RGP3 HGNC:9999|MIM:602189|Ensembl:ENSG00000138835|HPRD:03720|Vega:OTTHUMG00000021048 9 9q32 regulator of G-protein signaling 3 protein-coding RGS3 regulator of G-protein signaling 3 O regulator of G-protein signalling 3 20121230 -9606 5999 RGS4 RP11-430G6.1 RGP4|SCZD9 HGNC:10000|MIM:602516|Ensembl:ENSG00000117152|HPRD:03947|Vega:OTTHUMG00000034417 1 1q23.3 regulator of G-protein signaling 4 protein-coding RGS4 regulator of G-protein signaling 4 O schizophrenia disorder 9 20121230 -9606 6000 RGS7 RP11-80B9.3 - HGNC:10003|MIM:602517|Ensembl:ENSG00000182901|HPRD:03948|Vega:OTTHUMG00000040107 1 1q43|1q23.1 regulator of G-protein signaling 7 protein-coding RGS7 regulator of G-protein signaling 7 O regulator of G-protein signaling RGS7|regulator of G-protein signalling 7 20121230 -9606 6001 RGS10 - - HGNC:9992|MIM:602856|Ensembl:ENSG00000148908|HPRD:04172|Vega:OTTHUMG00000019150 10 10q25 regulator of G-protein signaling 10 protein-coding RGS10 regulator of G-protein signaling 10 O regulator of G-protein signalling 10 20121230 -9606 6002 RGS12 RP11-529E10.1 - HGNC:9994|MIM:602512|Ensembl:ENSG00000159788|HPRD:03943|Vega:OTTHUMG00000090277 4 4p16.3 regulator of G-protein signaling 12 protein-coding RGS12 regulator of G-protein signaling 12 O regulator of G-protein signalling 12 20121230 -9606 6003 RGS13 RP11-92K2.1 - HGNC:9995|MIM:607190|Ensembl:ENSG00000127074|HPRD:06222|Vega:OTTHUMG00000035601 1 1q31.2 regulator of G-protein signaling 13 protein-coding RGS13 regulator of G-protein signaling 13 O regulator of G-protein signalling 13 20121230 -9606 6004 RGS16 - A28-RGS14|A28-RGS14P|RGS-R HGNC:9997|MIM:602514|Ensembl:ENSG00000143333|HPRD:03945|Vega:OTTHUMG00000035212 1 1q25-q31 regulator of G-protein signaling 16 protein-coding RGS16 regulator of G-protein signaling 16 O hRGS-r|regulator of G-protein signalling 16|retinal-specific RGS|retinally abundant regulator of G-protein signaling 20121230 -9606 6005 RHAG - CD241|RH2|RH50A|Rh50|Rh50GP|SLC42A1 HGNC:10006|MIM:180297|Ensembl:ENSG00000112077|HPRD:01582|Vega:OTTHUMG00000016377 6 6p12.3 Rh-associated glycoprotein protein-coding RHAG Rh-associated glycoprotein O Rhesus associated polypeptide, 50-KD|Rhesus blood group-associated glycoprotein|ammonium transporter Rh type A|erythrocyte membrane glycoprotein Rh50|erythrocyte plasma membrane 50 kDa glycoprotein|rh family type A glycoprotein|rh type A glycoprotein|rhesus blood group family type A glycoprotein|rhesus blood group-associated ammonia channel 20121230 -9606 6006 RHCE RP11-335G20.2 CD240CE|RH|RH30A|RHC|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII HGNC:10008|MIM:111700|Ensembl:ENSG00000188672|HPRD:00200|Vega:OTTHUMG00000007650 1 1p36.11 Rh blood group, CcEe antigens protein-coding RHCE Rh blood group, CcEe antigens O RHCE blood group variant Crawford antigen Rh43|Rh blood group C antigen|Rh blood group Rhce antigen|Rh blood group antigen Evans|Rh polypeptide I|Rhesus blood group CE protein|Rhesus blood group E antigen|Rhesus blood group Rhce antigen|Rhesus system C and E polypeptides|blood group Rh(CE) polypeptide|blood group RhCcEe antigen|rh polypeptide 1|rhesus C/E antigens|rhesus blood group little e antigen|silenced Rh blood group CcEe antigen|truncated RHCE 20121230 -9606 6007 RHD RP11-335G20.5 CD240D|DIIIc|RH|RH30|RHCED|RHDVA(TT)|RHDel|RHPII|RHXIII|Rh4|RhDCw|RhII|RhK562-II|RhPI HGNC:10009|MIM:111680|Ensembl:ENSG00000187010|HPRD:00199|Vega:OTTHUMG00000003476 1 1p36.11 Rh blood group, D antigen protein-coding RHD Rh blood group, D antigen O D antigen (DCS)|RH polypeptide 2|Rh blood group antigen Evans|Rhesus blood group D antigen allele DIII type 7|Rhesus system D polypeptide|blood group Rh(D) polypeptide|rhesus D antigen 20121230 -9606 6008 RHEBP1 - RHEB|RHEB1 HGNC:10010 10 10q11 Ras-homolog enriched in brain pseudogene 1 pseudo RHEBP1 Ras-homolog enriched in brain pseudogene 1 O - 20121230 -9606 6009 RHEB - RHEB2 HGNC:10011|MIM:601293|Ensembl:ENSG00000106615|HPRD:03188|Vega:OTTHUMG00000157330 7 7q36 Ras homolog enriched in brain protein-coding RHEB Ras homolog enriched in brain O GTP-binding protein Rheb|Ras homolog enriched in brain 2 20121230 -9606 6010 RHO - CSNBAD1|OPN2|RP4 HGNC:10012|MIM:180380|Ensembl:ENSG00000163914|HPRD:01584|Vega:OTTHUMG00000159542 3 3q21-q24 rhodopsin protein-coding RHO rhodopsin O opsin 2, rod pigment|opsin-2 20121230 -9606 6011 GRK1 - GPRK1|RHOK|RK HGNC:10013|MIM:180381|Ensembl:ENSG00000185974|HPRD:01585 13 13q34 G protein-coupled receptor kinase 1 protein-coding GRK1 G protein-coupled receptor kinase 1 O rhodopsin kinase 20121230 -9606 6012 RIEG2 - ARS|RGS2 HGNC:10015|MIM:601499 13 13q14 Rieger syndrome 2 unknown RIEG2 Rieger syndrome 2 O - 20120622 -9606 6013 RLN1 - H1|RLXH1|bA12D24.3.1|bA12D24.3.2 HGNC:10026|MIM:179730|Ensembl:ENSG00000107018|HPRD:01560|Vega:OTTHUMG00000019495 9 9p24.1 relaxin 1 protein-coding RLN1 relaxin 1 O preprorelaxin H1|prorelaxin H1|relaxin H1 20121230 -9606 6014 RIT2 - RIBA|RIN|ROC2 HGNC:10017|MIM:609592|Ensembl:ENSG00000152214|HPRD:15253|Vega:OTTHUMG00000132611 18 18q12.3 Ras-like without CAAX 2 protein-coding RIT2 Ras-like without CAAX 2 O GTP-binding protein Rit2|GTP-binding protein Roc2|Ric-like, expressed in neurons|ras-like protein expressed in neurons|ras-like without CAAX protein 2 20121230 -9606 6015 RING1 DADB-100D22.6 RING1A|RNF1 HGNC:10018|MIM:602045|Ensembl:ENSG00000204227|HPRD:03624|Vega:OTTHUMG00000031278 6 6p21.3 ring finger protein 1 protein-coding RING1 ring finger protein 1 O E3 ubiquitin-protein ligase RING1|polycomb complex protein RING1|really interesting new gene 1 protein 20121230 -9606 6016 RIT1 RP11-101O6.4 RIBB|RIT|ROC1 HGNC:10023|MIM:609591|Ensembl:ENSG00000143622|HPRD:10195|Vega:OTTHUMG00000014104 1 1q22 Ras-like without CAAX 1 protein-coding RIT1 Ras-like without CAAX 1 O GTP-binding protein Rit1|GTP-binding protein Roc1|Ric-like, expressed in many tissues|ras-like protein expressed in many tissues|ras-like without CAAX protein 1 20121230 -9606 6017 RLBP1 - CRALBP HGNC:10024|MIM:180090|Ensembl:ENSG00000140522|HPRD:01572|Vega:OTTHUMG00000172884 15 15q26 retinaldehyde binding protein 1 protein-coding RLBP1 retinaldehyde binding protein 1 O cellular retinaldehyde-binding protein|cellular retinaldehyde-binding protein-1|retinaldehyde-binding protein 1 20121230 -9606 6018 RLF RP1-39G22.1 ZN-15L|ZNF292L HGNC:10025|MIM:180610|Ensembl:ENSG00000117000|HPRD:01614|Vega:OTTHUMG00000005763 1 1p32 rearranged L-myc fusion protein-coding RLF rearranged L-myc fusion O Zn-15 related|rearranged L-myc fusion gene protein|rearranged L-myc fusion sequence|zinc finger protein Rlf|zn-15-related protein 20121230 -9606 6019 RLN2 RP11-12D24.2 H2|RLXH2|bA12D24.1.1|bA12D24.1.2 HGNC:10027|MIM:179740|Ensembl:ENSG00000107014|HPRD:01561|Vega:OTTHUMG00000019496 9 9p24.1 relaxin 2 protein-coding RLN2 relaxin 2 O prorelaxin H2|relaxin H2|relaxin, ovarian, of pregnancy 20121230 -9606 6022 RMD1 - - HGNC:10030|MIM:600332 1 1q41 rippling muscle disease 1 unknown RMD1 rippling muscle disease 1 O - 20120622 -9606 6023 RMRP - CHH|NME1|RMRPR|RRP2 HGNC:10031|MIM:157660 9 9p21-p12 RNA component of mitochondrial RNA processing endoribonuclease miscRNA RMRP RNA component of mitochondrial RNA processing endoribonuclease O - 20121230 -9606 6025 RN5S1@ - RN5S HGNC:10034|MIM:180420 1 1q42.11-q42.13 RNA, 5S ribosomal 1q42 cluster other RN5S1@ RNA, 5S ribosomal 1q42 cluster O - 20121209 -9606 6029 RN7SL1 - 7L1a|7SL|RN7SL|RNSRP1 HGNC:10038|MIM:612177 14 14q21.3 RNA, 7SL, cytoplasmic 1 snRNA RN7SL1 RNA, 7SL, cytoplasmic 1 O - 20121230 -9606 6030 RN7SL4P - 7L28|RN7SLP1 HGNC:10039 3 3p25.1 RNA, 7SL, cytoplasmic 4, pseudogene pseudo RN7SL4P RNA, 7SL, cytoplasmic 4, pseudogene O - 20120720 -9606 6031 RN7SL5P - 7LEM1|RN7SLP2 HGNC:10040 9 9p23 RNA, 7SL, cytoplasmic 5, pseudogene pseudo RN7SL5P RNA, 7SL, cytoplasmic 5, pseudogene O - 20121230 -9606 6032 RN7SL6P - 7L7|RN7SLP3 HGNC:10041 22 22q11.22 RNA, 7SL, cytoplasmic 6, pseudogene pseudo RN7SL6P RNA, 7SL, cytoplasmic 6, pseudogene O - 20120720 -9606 6033 RN7SL7P - 7L23|RN7SLP4 HGNC:10042 7 7q21.2 RNA, 7SL, cytoplasmic 7, pseudogene pseudo RN7SL7P RNA, 7SL, cytoplasmic 7, pseudogene O - 20121230 -9606 6034 RN7SL8P - 7L63|RN7SLP5 HGNC:10043 7 7q22.3 RNA, 7SL, cytoplasmic 8, pseudogene pseudo RN7SL8P RNA, 7SL, cytoplasmic 8, pseudogene O - 20121230 -9606 6035 RNASE1 - RIB1|RNS1 HGNC:10044|MIM:180440|Ensembl:ENSG00000129538|HPRD:01591|Vega:OTTHUMG00000029603 14 14q11.2 ribonuclease, RNase A family, 1 (pancreatic) protein-coding RNASE1 ribonuclease, RNase A family, 1 (pancreatic) O HP-RNase|RIB-1|RNase 1|RNase A|RNase upI-1|ribonuclease 1|ribonuclease A|ribonuclease pancreatic 20121230 -9606 6036 RNASE2 - EDN|RNS2 HGNC:10045|MIM:131410|Ensembl:ENSG00000169385|HPRD:00577|Vega:OTTHUMG00000029607 14 14q24-q31 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) protein-coding RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) O RNase 2|RNase UpI-2|eosinophil-derived neurotoxin|non-secretory ribonuclease|ribonuclease 2|ribonuclease US 20121230 -9606 6037 RNASE3 - ECP|RNS3 HGNC:10046|MIM:131398|Ensembl:ENSG00000169397|HPRD:00575|Vega:OTTHUMG00000029604 14 14q24-q31 ribonuclease, RNase A family, 3 protein-coding RNASE3 ribonuclease, RNase A family, 3 O RNase 3|cytotoxic ribonuclease|eosinophil cationic protein|ribonuclease 3 20121230 -9606 6038 RNASE4 - RNS4 HGNC:10047|MIM:601030|Ensembl:ENSG00000181784|Ensembl:ENSG00000258818|HPRD:03018|Vega:OTTHUMG00000171011 14 14q11 ribonuclease, RNase A family, 4 protein-coding RNASE4 ribonuclease, RNase A family, 4 O RNase 4|ribonuclease 4 20121230 -9606 6039 RNASE6 - RNS6|RNasek6 HGNC:10048|MIM:601981|Ensembl:ENSG00000169413|HPRD:03581|Vega:OTTHUMG00000029585 14 14q11.2 ribonuclease, RNase A family, k6 protein-coding RNASE6 ribonuclease, RNase A family, k6 O ribonuclease K6 20121230 -9606 6041 RNASEL RP11-20H6.1 PRCA1|RNS4 HGNC:10050|MIM:180435|Ensembl:ENSG00000135828|HPRD:01590|Vega:OTTHUMG00000035213 1 1q25 ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) protein-coding RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) O 2',5'-oligoisoadenylate synthetase-dependent|2-5A-dependent RNase|2-5A-dependent ribonuclease|RNase L|interferon-induced 2-5A-dependent RNase|ribonuclease 4 20121230 -9606 6043 SNORA63 - E3|E3-2|RNE3|RNU107 HGNC:10106|MIM:180647 3 3q27 small nucleolar RNA, H/ACA box 63 snoRNA SNORA63 small nucleolar RNA, H/ACA box 63 O - 20121230 -9606 6044 SNORA62 - E2|E2-1|RNE2|RNU108 HGNC:10107|MIM:180646 3 3p22 small nucleolar RNA, H/ACA box 62 snoRNA SNORA62 small nucleolar RNA, H/ACA box 62 O - 20121230 -9606 6045 RNF2 GS1-120K12.1 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 HGNC:10061|MIM:608985|Ensembl:ENSG00000121481|HPRD:07028|Vega:OTTHUMG00000035391 1 1q25.3 ring finger protein 2 protein-coding RNF2 ring finger protein 2 O E3 ubiquitin-protein ligase RING2|HIP2-interacting protein 3|RING finger protein 1B|RING finger protein BAP-1|huntingtin-interacting protein 2-interacting protein 3|protein DinG 20121230 -9606 6046 BRD2 DADB-17J1.3 D6S113E|FSH|FSRG1|NAT|RING3|RNF3 HGNC:1103|MIM:601540|Ensembl:ENSG00000204256|HPRD:03326|Vega:OTTHUMG00000031241 6 6p21.3 bromodomain containing 2 protein-coding BRD2 bromodomain containing 2 O O27.1.1|bromodomain-containing 2|bromodomain-containing protein 2|female sterile homeotic-related gene 1|really interesting new gene 3 protein 20121230 -9606 6047 RNF4 RES4-26 SLX5|SNURF HGNC:10067|MIM:602850|Ensembl:ENSG00000063978|HPRD:04167|Vega:OTTHUMG00000160516 4 4p16.3 ring finger protein 4 protein-coding RNF4 ring finger protein 4 O E3 ubiquitin ligase RNF4|E3 ubiquitin-protein ligase RNF4|small nuclear RING finger protein 20121230 -9606 6048 RNF5 DAAP-218M18.2 RING5|RMA1 HGNC:10068|MIM:602677|Ensembl:ENSG00000204308|HPRD:04057|Vega:OTTHUMG00000031093 6 6p21.3 ring finger protein 5, E3 ubiquitin protein ligase protein-coding RNF5 ring finger protein 5, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RNF5|protein G16|ram1 homolog 20121230 -9606 6049 RNF6 RP11-380N8.5 - HGNC:10069|MIM:604242|Ensembl:ENSG00000127870|HPRD:05027|Vega:OTTHUMG00000016614 13 13q12.2 ring finger protein (C3H2C3 type) 6 protein-coding RNF6 ring finger protein (C3H2C3 type) 6 O E3 ubiquitin-protein ligase RNF6|RING-H2 protein RNF-6 20121230 -9606 6050 RNH1 - RAI|RNH HGNC:10074|MIM:173320|Ensembl:ENSG00000023191|HPRD:01412|Vega:OTTHUMG00000119086 11 11p15.5 ribonuclease/angiogenin inhibitor 1 protein-coding RNH1 ribonuclease/angiogenin inhibitor 1 O placental RNase inhibitor|placental ribonuclease inhibitor|ribonuclease inhibitor 20121230 -9606 6051 RNPEP - - HGNC:10078|MIM:602675|Ensembl:ENSG00000176393|HPRD:04055|Vega:OTTHUMG00000035866 1 1q32 arginyl aminopeptidase (aminopeptidase B) protein-coding RNPEP arginyl aminopeptidase (aminopeptidase B) O AP-B|aminopeptidase B|arginine aminopeptidase 20121230 -9606 6052 RNR1 - - HGNC:10082|MIM:180450 13 13p12 RNA, ribosomal 1 other RNR1 RNA, ribosomal 1 O - 20110814 -9606 6053 RNR2 - - HGNC:10083|MIM:180451 14 14p12 RNA, ribosomal 2 other RNR2 RNA, ribosomal 2 O - 20110814 -9606 6054 RNR3 - - HGNC:10084|MIM:180452 15 15p12 RNA, ribosomal 3 other RNR3 RNA, ribosomal 3 O - 20110814 -9606 6055 RNR4 - - HGNC:10085|MIM:180453 21 21p12 RNA, ribosomal 4 other RNR4 RNA, ribosomal 4 O - 20110814 -9606 6056 RNR5 - - HGNC:10086|MIM:180454 22 22p12 RNA, ribosomal 5 other RNR5 RNA, ribosomal 5 O - 20110814 -9606 6059 ABCE1 OK/SW-cl.40 ABC38|OABP|RLI|RNASEL1|RNASELI|RNS4I HGNC:69|MIM:601213|Ensembl:ENSG00000164163|HPRD:03132|Vega:OTTHUMG00000161478 4 4q31 ATP-binding cassette, sub-family E (OABP), member 1 protein-coding ABCE1 ATP-binding cassette, sub-family E (OABP), member 1 O 2'-5'-oligoadenylate-binding protein|ATP-binding cassette sub-family E member 1|RNase L inhibitor|huHP68|ribonuclease 4 inhibitor|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) inhibitor 20121230 -9606 6060 RNU1-4 - HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F HGNC:10128|MIM:180680 1 1p36.1 RNA, U1 small nuclear 4 snRNA RNU1-4 RNA, U1 small nuclear 4 O - 20121230 -9606 6063 RNU1-12P - RNU1P2|U1P2A HGNC:10134 1 1q21.2 RNA, U1 small nuclear 12, pseudogene pseudo RNU1-12P RNA, U1 small nuclear 12, pseudogene O - 20120720 -9606 6066 RNU2-1 - RNU2|U2 HGNC:10142|MIM:180690 17 17q12-q21 RNA, U2 small nuclear 1 snRNA RNU2-1 RNA, U2 small nuclear 1 O - 20121209 -9606 6068 RNU3P1 - U3 HGNC:10175 15 15q22.1 RNA, U3 small nucleolar pseudogene 1 pseudo RNU3P1 RNA, U3 small nucleolar pseudogene 1 O - 20121230 -9606 6069 RNU4-7P - RNU4P1|U4|U4/7 HGNC:10194 6 6q25.1 RNA, U4 small nuclear 7, pseudogene pseudo RNU4-7P RNA, U4 small nuclear 7, pseudogene O - 20121230 -9606 6070 RNU4-8P - RNU4P2|U4|U4/14 HGNC:10195 2 2q11.2 RNA, U4 small nuclear 8, pseudogene pseudo RNU4-8P RNA, U4 small nuclear 8, pseudogene O - 20121230 -9606 6071 RNU6V - 87U6|LH87 HGNC:10230 1 1p13 RNA, U6 small nuclear variant sequence with SNRPE pseudogene sequence pseudo RNU6V RNA, U6 small nuclear variant sequence with SNRPE pseudogene sequence O - 20121230 -9606 6072 RNU7-68P - HSU7.732A|RNU7P1|U7|U7.68 HGNC:10236 X Xq24 RNA, U7 small nuclear 68 pseudogene pseudo RNU7-68P RNA, U7 small nuclear 68 pseudogene O - 20120720 -9606 6073 RNU7-86P - HSU7.7/32B|RNU7P2|U7 HGNC:10237 X Xq24 RNA, U7 small nuclear 86 pseudogene pseudo RNU7-86P RNA, U7 small nuclear 86 pseudogene O - 20120720 -9606 6074 RNU7-24P - HSU7.24|HSU7.25|RNU7P3|U7|U7.24 HGNC:34120 16 16p12.1 RNA, U7 small nuclear 24 pseudogene pseudo RNU7-24P RNA, U7 small nuclear 24 pseudogene O - 20121021 -9606 6075 RNU7-55P - HSU7.36|HSU7.55|RNU7P4|U7|U7.55 HGNC:10239 8 8p23.1 RNA, U7 small nuclear 55 pseudogene pseudo RNU7-55P RNA, U7 small nuclear 55 pseudogene O - 20121021 -9606 6076 SNORD13P1 - RNU13P1|U13|U13.32A HGNC:10110 22 22q13.2 small nucleolar RNA, C/D box 13 pseudogene 1 pseudo SNORD13P1 small nucleolar RNA, C/D box 13 pseudogene 1 O - 20120720 -9606 6077 SNORD13P2 - RNU13P2|U13|U13.12A HGNC:10111 7 7p22.1 small nucleolar RNA, C/D box 13 pseudogene 2 pseudo SNORD13P2 small nucleolar RNA, C/D box 13 pseudogene 2 O - 20121230 -9606 6078 SNORD13P3 - RNU13P3|U13|U13.4B HGNC:10112 3 3p21.31 small nucleolar RNA, C/D box 13 pseudogene 3 pseudo SNORD13P3 small nucleolar RNA, C/D box 13 pseudogene 3 O - 20121230 -9606 6079 SNORD15A - RNU15A|SNORNA|U15A HGNC:10114|MIM:600455 11 11q13.4 small nucleolar RNA, C/D box 15A snoRNA SNORD15A small nucleolar RNA, C/D box 15A O - 20121230 -9606 6080 SNORA73A - E1|E1-7|E1b|RNE1|RNU17A|U17A HGNC:10115|MIM:180645 1 1p36.1 small nucleolar RNA, H/ACA box 73A snoRNA SNORA73A small nucleolar RNA, H/ACA box 73A O - 20121230 -9606 6081 SNORA73B - RNU17B|U17B HGNC:10116|MIM:603239 1 1p36.1 small nucleolar RNA, H/ACA box 73B snoRNA SNORA73B small nucleolar RNA, H/ACA box 73B O - 20121021 -9606 6082 SNORD20 - RNU20|U20 HGNC:10143|MIM:604012 2 2q37.1 small nucleolar RNA, C/D box 20 snoRNA SNORD20 small nucleolar RNA, C/D box 20 O - 20121230 -9606 6083 SNORD21 - RNU21|U21 HGNC:10144|MIM:603635 1 1p22.1 small nucleolar RNA, C/D box 21 snoRNA SNORD21 small nucleolar RNA, C/D box 21 O - 20121230 -9606 6084 RNY1 - HY1|Y1 HGNC:10242|MIM:601821 7 7q36 RNA, Ro-associated Y1 ncRNA RNY1 RNA, Ro-associated Y1 O - 20121230 -9606 6085 RNY3 - HY3|Y3 HGNC:10243|MIM:601822 7 7q36 RNA, Ro-associated Y3 ncRNA RNY3 RNA, Ro-associated Y3 O - 20121230 -9606 6086 RNY4 - HY4|Y4 HGNC:10244|MIM:601823 7 7q36 RNA, Ro-associated Y4 ncRNA RNY4 RNA, Ro-associated Y4 O - 20121230 -9606 6087 RNY4P1 - hY4.B8 HGNC:10245 9 9q21.13 RNA, Ro-associated Y4 pseudogene 1 pseudo RNY4P1 RNA, Ro-associated Y4 pseudogene 1 O - 20121230 -9606 6088 RNY4P2 - hY4.B7 HGNC:10246 17 17q21.31 RNA, Ro-associated Y4 pseudogene 2 pseudo RNY4P2 RNA, Ro-associated Y4 pseudogene 2 O - 20121230 -9606 6089 RNY4P3 - hY4.F2 HGNC:10247 16 16q12.1 RNA, Ro-associated Y4 pseudogene 3 pseudo RNY4P3 RNA, Ro-associated Y4 pseudogene 3 O - 20121230 -9606 6090 RNY5 - Y5 HGNC:10248|MIM:601824 7 7q36 RNA, Ro-associated Y5 ncRNA RNY5 RNA, Ro-associated Y5 O - 20121230 -9606 6091 ROBO1 - DUTT1|SAX3 HGNC:10249|MIM:602430|Ensembl:ENSG00000169855|HPRD:03890|Vega:OTTHUMG00000158843 3 3p12 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) O deleted in U twenty twenty|roundabout homolog 1 20121230 -9606 6092 ROBO2 - SAX3 HGNC:10250|MIM:602431|Ensembl:ENSG00000185008|Vega:OTTHUMG00000158935 3 3p12.3 roundabout, axon guidance receptor, homolog 2 (Drosophila) protein-coding ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) O roundabout homolog 2 20121230 -9606 6093 ROCK1 - P160ROCK|ROCK-I HGNC:10251|MIM:601702|Ensembl:ENSG00000067900|HPRD:03414|Vega:OTTHUMG00000131723 18 18q11.1 Rho-associated, coiled-coil containing protein kinase 1 protein-coding ROCK1 Rho-associated, coiled-coil containing protein kinase 1 O Rho kinase|p160 ROCK-1|p160-ROCK|renal carcinoma antigen NY-REN-35|rho-associated protein kinase 1|rho-associated, coiled-coil-containing protein kinase 1|rho-associated, coiled-coil-containing protein kinase I 20121230 -9606 6094 ROM1 - ROM|ROSP1|RP7|TSPAN23 HGNC:10254|MIM:180721|Ensembl:ENSG00000149489|HPRD:01616|Vega:OTTHUMG00000167528 11 11q13 retinal outer segment membrane protein 1 protein-coding ROM1 retinal outer segment membrane protein 1 O rod outer segment membrane protein 1|tetraspanin-23|tspan-23 20121230 -9606 6095 RORA - NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA HGNC:10258|MIM:600825|Ensembl:ENSG00000069667|HPRD:02896|Vega:OTTHUMG00000132769 15 15q22.2 RAR-related orphan receptor A protein-coding RORA RAR-related orphan receptor A O ROR-alpha|nuclear receptor ROR-alpha|nuclear receptor RZR-alpha|nuclear receptor subfamily 1 group F member 1|retinoic acid receptor-related orphan receptor alpha|retinoid-related orphan receptor alpha|thyroid hormone nuclear receptor alpha variant 4|transcription factor RZR-alpha 20121230 -9606 6096 RORB - NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 HGNC:10259|MIM:601972|Ensembl:ENSG00000198963|HPRD:09062|Vega:OTTHUMG00000020026 9 9q22 RAR-related orphan receptor B protein-coding RORB RAR-related orphan receptor B O RAR-related orphan receptor beta|nuclear receptor ROR-beta|nuclear receptor RZR-beta|nuclear receptor subfamily 1 group F member 2|retinoic acid-binding receptor beta|retinoid-related orphan receptor beta|retinoid-related orphan receptor-beta 20121230 -9606 6097 RORC RP11-98D18.11-001 NR1F3|RORG|RZR-GAMMA|RZRG|TOR HGNC:10260|MIM:602943|Ensembl:ENSG00000143365|HPRD:04250|Vega:OTTHUMG00000013053 1 1q21 RAR-related orphan receptor C protein-coding RORC RAR-related orphan receptor C O RAR-related orphan nuclear receptor variant 2|nuclear receptor ROR-gamma|nuclear receptor RZR-gamma|nuclear receptor subfamily 1 group F member 3|retinoic acid-binding receptor gamma|retinoid-related orphan receptor gamma 20121230 -9606 6098 ROS1 RP1-179P9.1 MCF3|ROS|c-ros-1 HGNC:10261|MIM:165020|Ensembl:ENSG00000047936|HPRD:01295|Vega:OTTHUMG00000016188 6 6q22 c-ros oncogene 1 , receptor tyrosine kinase protein-coding ROS1 c-ros oncogene 1 , receptor tyrosine kinase O c-Ros receptor tyrosine kinase|proto-oncogene c-Ros|proto-oncogene c-Ros-1|proto-oncogene tyrosine-protein kinase ROS|receptor tyrosine kinase c-ros oncogene 1|transmembrane tyrosine-specific protein kinase|v-ros UR2 sarcoma virus oncogene homolog 1|v-ros avian UR2 sarcoma virus oncogene homolog 1 20121230 -9606 6100 RP9 - PAP-1 HGNC:10288|MIM:607331|Ensembl:ENSG00000164610|HPRD:08457|Vega:OTTHUMG00000152988 7 7p14.3 retinitis pigmentosa 9 (autosomal dominant) protein-coding RP9 retinitis pigmentosa 9 (autosomal dominant) O Pim-1 kinase associated protein|pim-1-associated protein|retinitis pigmentosa 9 protein 20121230 -9606 6101 RP1 - DCDC4A|ORP1 HGNC:10263|MIM:603937|Ensembl:ENSG00000104237|HPRD:04896|Vega:OTTHUMG00000164379 8 8q12.1 retinitis pigmentosa 1 (autosomal dominant) protein-coding RP1 retinitis pigmentosa 1 (autosomal dominant) O oxygen-regulated protein 1|retinitis pigmentosa 1 protein|retinitis pigmentosa RP1 protein 20121230 -9606 6102 RP2 - DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2 HGNC:10274|MIM:300757|Ensembl:ENSG00000102218|HPRD:02424|Vega:OTTHUMG00000021430 X Xp11.3 retinitis pigmentosa 2 (X-linked recessive) protein-coding RP2 retinitis pigmentosa 2 (X-linked recessive) O protein XRP2 20121230 -9606 6103 RPGR - COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 HGNC:10295|MIM:312610|Ensembl:ENSG00000156313|HPRD:02425|Vega:OTTHUMG00000021361 X Xp21.1 retinitis pigmentosa GTPase regulator protein-coding RPGR retinitis pigmentosa GTPase regulator O X-linked retinitis pigmentosa GTPase regulator|retinitis pigmentosa 15|retinitis pigmentosa 3 GTPase regulator 20121230 -9606 6104 RP6 - - HGNC:10286|MIM:312612 X Xp21.3-p21.2 retinitis pigmentosa 6 (X-linked recessive) unknown RP6 retinitis pigmentosa 6 (X-linked recessive) O - 20110215 -9606 6114 RP22 - - HGNC:10276|MIM:602594 16 16p12.3-p12.1 retinitis pigmentosa 22 (autosomal recessive) unknown RP22 retinitis pigmentosa 22 (autosomal recessive) O - 20120622 -9606 6115 RP23 - - HGNC:10277|MIM:300424 X Xp22 retinitis pigmentosa 23 (X-linked recessive) unknown RP23 retinitis pigmentosa 23 (X-linked recessive) O - 20120622 -9606 6116 RP24 - - HGNC:10278|MIM:300155 X Xq26-q27 retinitis pigmentosa 24 (X-linked recessive) unknown RP24 retinitis pigmentosa 24 (X-linked recessive) O - 20120622 -9606 6117 RPA1 - HSSB|MST075|REPA1|RF-A|RP-A|RPA70 HGNC:10289|MIM:179835|Ensembl:ENSG00000132383|HPRD:01565|Vega:OTTHUMG00000090579 17 17p13.3 replication protein A1, 70kDa protein-coding RPA1 replication protein A1, 70kDa O MSTP075|RF-A protein 1|RP-A p70|replication factor A protein 1|replication protein A 70 kDa DNA-binding subunit|single-stranded DNA-binding protein 20121230 -9606 6118 RPA2 RP4-547C9.3 REPA2|RPA32 HGNC:10290|MIM:179836|Ensembl:ENSG00000117748|HPRD:01566|Vega:OTTHUMG00000003915 1 1p35 replication protein A2, 32kDa protein-coding RPA2 replication protein A2, 32kDa O RF-A protein 2|RP-A p32|RP-A p34|replication factor A protein 2|replication protein A 32 kDa subunit|replication protein A 34 kDa subunit 20121230 -9606 6119 RPA3 - REPA3 HGNC:10291|MIM:179837|Ensembl:ENSG00000106399|HPRD:01567|Vega:OTTHUMG00000023748 7 7p22 replication protein A3, 14kDa protein-coding RPA3 replication protein A3, 14kDa O RF-A protein 3|RP-A p14|replication factor A protein 3|replication protein A 14 kDa subunit 20121230 -9606 6120 RPE HUSSY-17 RPE2-1 HGNC:10293|MIM:180480|Ensembl:ENSG00000197713|HPRD:01608|Vega:OTTHUMG00000154690 2 2q32-q33.3 ribulose-5-phosphate-3-epimerase protein-coding RPE ribulose-5-phosphate-3-epimerase O ribulose-phosphate 3-epimerase 20121230 -9606 6121 RPE65 - LCA2|RP20|mRPE65|rd12|sRPE65 HGNC:10294|MIM:180069|Ensembl:ENSG00000116745|HPRD:01569|Vega:OTTHUMG00000009208 1 1p31 retinal pigment epithelium-specific protein 65kDa protein-coding RPE65 retinal pigment epithelium-specific protein 65kDa O RBP-binding membrane protein|all-trans-retinyl-palmitate hydrolase|p63|retinal pigment epithelium-specific 65 kDa protein|retinitis pigmentosa 20 (autosomal recessive)|retinoid isomerohydrolase|retinol isomerase 20121230 -9606 6122 RPL3 OK/SW-cl.32 ASC-1|L3|TARBP-B HGNC:10332|MIM:604163|Ensembl:ENSG00000100316|HPRD:16042|Vega:OTTHUMG00000151079 22 22q13 ribosomal protein L3 protein-coding RPL3 ribosomal protein L3 O 60S ribosomal protein L3|HIV-1 TAR RNA-binding protein B|hypothetical protein 20121230 -9606 6123 RPL3L - - HGNC:10351|Ensembl:ENSG00000140986|HPRD:17998|Vega:OTTHUMG00000128685 16 16p13.3 ribosomal protein L3-like protein-coding RPL3L ribosomal protein L3-like O 60S ribosomal protein L3-like 20121230 -9606 6124 RPL4 - L4 HGNC:10353|MIM:180479|Ensembl:ENSG00000174444|HPRD:01607|Vega:OTTHUMG00000133193 15 15q22 ribosomal protein L4 protein-coding RPL4 ribosomal protein L4 O 60S ribosomal protein L1|60S ribosomal protein L4 20121230 -9606 6125 RPL5 MSTP030 DBA6|L5 HGNC:10360|MIM:603634|Ensembl:ENSG00000122406|HPRD:04699|Vega:OTTHUMG00000010899 1 1p22.1 ribosomal protein L5 protein-coding RPL5 ribosomal protein L5 O 60S ribosomal protein L5 20121230 -9606 6126 RPL9P7 - RPL9L1|RPL9P1|RPL9_19_1768 HGNC:30335 X Xp22.1 ribosomal protein L9 pseudogene 7 pseudo RPL9P7 ribosomal protein L9 pseudogene 7 O - 20121230 -9606 6128 RPL6 - L6|SHUJUN-2|TAXREB107|TXREB1 HGNC:10362|MIM:603703|Ensembl:ENSG00000089009|HPRD:04745|Vega:OTTHUMG00000169685 12 12q24.1 ribosomal protein L6 protein-coding RPL6 ribosomal protein L6 O 60S ribosomal protein L6|DNA-binding protein TAXREB107|neoplasm-related protein C140|tax-responsive enhancer element-binding protein 107 20121230 -9606 6129 RPL7 - L7|humL7-1 HGNC:10363|MIM:604166|Ensembl:ENSG00000147604|HPRD:05004|Vega:OTTHUMG00000134312 8 8q21.11 ribosomal protein L7 protein-coding RPL7 ribosomal protein L7 O 60S ribosomal protein L7 20121230 -9606 6130 RPL7A RP11-244N20.10-004 L7A|SURF3|TRUP HGNC:10364|MIM:185640|Ensembl:ENSG00000148303|HPRD:01712|Vega:OTTHUMG00000020864 9 9q34 ribosomal protein L7a protein-coding RPL7A ribosomal protein L7a O 60S ribosomal protein L7a|PLA-X polypeptide|surfeit 3|surfeit locus protein 3|thyroid hormone receptor uncoupling protein 20121230 -9606 6132 RPL8 - L8 HGNC:10368|MIM:604177|Ensembl:ENSG00000161016|HPRD:16044|Vega:OTTHUMG00000165249 8 8q24.3 ribosomal protein L8 protein-coding RPL8 ribosomal protein L8 O 60S ribosomal protein L8 20121230 -9606 6133 RPL9 OK/SW-cl.103 L9|NPC-A-16 HGNC:10369|MIM:603686|Ensembl:ENSG00000163682|HPRD:04732|Vega:OTTHUMG00000099367 4 4p13 ribosomal protein L9 protein-coding RPL9 ribosomal protein L9 O 60S ribosomal protein L9 20121230 -9606 6134 RPL10 XX-FW83563B9.1 AUTSX5|DXS648|DXS648E|L10|NOV|QM HGNC:10298|MIM:312173|Ensembl:ENSG00000147403|HPRD:02421|Vega:OTTHUMG00000033189 X Xq28 ribosomal protein L10 protein-coding RPL10 ribosomal protein L10 O 60S ribosomal protein L10|Wilms tumor-related protein|laminin receptor homolog|tumor suppressor QM 20121230 -9606 6135 RPL11 RP11-223J15.3 DBA7|GIG34|L11 HGNC:10301|MIM:604175|Ensembl:ENSG00000142676|HPRD:10364|Vega:OTTHUMG00000002926 1 1p36.1-p35 ribosomal protein L11 protein-coding RPL11 ribosomal protein L11 O 60S ribosomal protein L11|CLL-associated antigen KW-12|cell growth-inhibiting protein 34 20121230 -9606 6136 RPL12 - L12 HGNC:10302|MIM:180475|Ensembl:ENSG00000197958|HPRD:01603|Vega:OTTHUMG00000020704 9 9q34 ribosomal protein L12 protein-coding RPL12 ribosomal protein L12 O 60S ribosomal protein L12 20121230 -9606 6137 RPL13 OK/SW-cl.46 BBC1|D16S444E|D16S44E|L13 HGNC:10303|MIM:113703|Ensembl:ENSG00000167526|HPRD:06428|Vega:OTTHUMG00000133770 16 16q24.3|17p11.2 ribosomal protein L13 protein-coding RPL13 ribosomal protein L13 O 60S ribosomal protein L13|OK/SW-cl.46|breast basic conserved protein 1 20121230 -9606 6138 RPL15 TCBAP0781 EC45|L15|RPL10|RPLY10|RPYL10 HGNC:10306|MIM:604174|Ensembl:ENSG00000174748|HPRD:16043|Vega:OTTHUMG00000130485 3 3p24.2 ribosomal protein L15 protein-coding RPL15 ribosomal protein L15 O 60S ribosomal protein L15 20121230 -9606 6139 RPL17 - L17|PD-1|RPL23 HGNC:10307|MIM:603661|Ensembl:ENSG00000215472|Ensembl:ENSG00000265681|HPRD:04715|Vega:OTTHUMG00000179680|Vega:OTTHUMG00000179689 18 18q21 ribosomal protein L17 protein-coding RPL17 ribosomal protein L17 O 60S ribosomal protein L17|60S ribosomal protein L23|gene encoding putative NFkB activating protein 20121230 -9606 6141 RPL18 - L18 HGNC:10310|MIM:604179|Ensembl:ENSG00000063177|HPRD:16046|Vega:OTTHUMG00000169760 19 19q13 ribosomal protein L18 protein-coding RPL18 ribosomal protein L18 O 60S ribosomal protein L18 20121230 -9606 6142 RPL18A - L18A HGNC:10311|MIM:604178|Ensembl:ENSG00000105640|HPRD:16045 19 19p13 ribosomal protein L18a protein-coding RPL18A ribosomal protein L18a O 60S ribosomal protein L18a|ribosomal protein L18a-like protein 20121230 -9606 6143 RPL19 - L19 HGNC:10312|MIM:180466|Ensembl:ENSG00000108298|HPRD:01594|Vega:OTTHUMG00000178979 17 17q12 ribosomal protein L19 protein-coding RPL19 ribosomal protein L19 O 60S ribosomal protein L19 20121230 -9606 6144 RPL21 RP11-428O18.5 L21 HGNC:10313|MIM:603636|Ensembl:ENSG00000122026|HPRD:04700|Vega:OTTHUMG00000016630 13 13q12.2 ribosomal protein L21 protein-coding RPL21 ribosomal protein L21 O 60S ribosomal protein L21 20121230 -9606 6145 RPL21P1 - RPL21P HGNC:10314 12 12q24.31 ribosomal protein L21 pseudogene 1 pseudo RPL21P1 ribosomal protein L21 pseudogene 1 O - 20121230 -9606 6146 RPL22 - EAP|HBP15|HBP15/L22|L22 HGNC:10315|MIM:180474|Ensembl:ENSG00000116251|HPRD:01602|Vega:OTTHUMG00000000953 1 1p36.31 ribosomal protein L22 protein-coding RPL22 ribosomal protein L22 O 60S ribosomal protein L22|EBER-associated protein|Epstein-Barr virus small RNA-associated protein|Epstein-Barr-encoded RNA-associated protein|heparin-binding protein 15|heparin-binding protein HBp15 20121230 -9606 6147 RPL23A - L23A|MDA20 HGNC:10317|MIM:602326|Ensembl:ENSG00000198242|HPRD:15998|Vega:OTTHUMG00000132684 17 17q11.2 ribosomal protein L23a protein-coding RPL23A ribosomal protein L23a O 60S ribosomal protein L23a|melanoma differentiation-associated gene 20 20121230 -9606 6148 RPL23AP1 - RPL23A_15_676|dJ377H14.8 HGNC:10318 6 6p21.3 ribosomal protein L23a pseudogene 1 pseudo RPL23AP1 ribosomal protein L23a pseudogene 1 O - 20121230 -9606 6150 MRPL23 - L23MRP|RPL23|RPL23L HGNC:10322|MIM:600789|Ensembl:ENSG00000214026|HPRD:02876|Vega:OTTHUMG00000012476 11 11p15.5 mitochondrial ribosomal protein L23 protein-coding MRPL23 mitochondrial ribosomal protein L23 O 39S ribosomal protein L23, mitochondrial|L23 mitochondrial-related protein|L23mt|MRP-L23|ribosomal protein related to L23 (mitochondrial) 20121230 -9606 6152 RPL24 - L24 HGNC:10325|MIM:604180|Ensembl:ENSG00000114391|HPRD:10365|Vega:OTTHUMG00000159146 3 3q12 ribosomal protein L24 protein-coding RPL24 ribosomal protein L24 O 60S ribosomal protein L24|60S ribosomal protein L30|ribosomal protein L30 20121230 -9606 6154 RPL26 - DBA11|L26 HGNC:10327|MIM:603704|Ensembl:ENSG00000161970|HPRD:04746|Vega:OTTHUMG00000108191 17 17p13 ribosomal protein L26 protein-coding RPL26 ribosomal protein L26 O 60S ribosomal protein L26 20121230 -9606 6155 RPL27 - L27 HGNC:10328|MIM:607526|Ensembl:ENSG00000131469|HPRD:09602|Vega:OTTHUMG00000180660 17 17q21 ribosomal protein L27 protein-coding RPL27 ribosomal protein L27 O 60S ribosomal protein L27 20121230 -9606 6156 RPL30 - L30 HGNC:10333|MIM:180467|Ensembl:ENSG00000156482|HPRD:01595|Vega:OTTHUMG00000164796 8 8q22 ribosomal protein L30 protein-coding RPL30 ribosomal protein L30 O 60S ribosomal protein L30 20121230 -9606 6157 RPL27A - L27A HGNC:10329|MIM:603637|Ensembl:ENSG00000166441|HPRD:04701|Vega:OTTHUMG00000165834 11 11p15 ribosomal protein L27a protein-coding RPL27A ribosomal protein L27a O 60S ribosomal protein L27a 20121230 -9606 6158 RPL28 - L28 HGNC:10330|MIM:603638|Ensembl:ENSG00000108107|HPRD:04702|Vega:OTTHUMG00000171991 19 19q13.4 ribosomal protein L28 protein-coding RPL28 ribosomal protein L28 O 60S ribosomal protein L28 20121230 -9606 6159 RPL29 - HIP|HUMRPL29|L29 HGNC:10331|MIM:601832|Ensembl:ENSG00000162244|HPRD:03495|Vega:OTTHUMG00000155262 3 3p21.3-p21.2 ribosomal protein L29 protein-coding RPL29 ribosomal protein L29 O 60S ribosomal protein L29|HP/HS-interacting protein|cell surface heparin-binding protein HIP|heparin/heparan sulfate-binding protein|heparin/heparan sulfate-interacting protein|ribosomal protein YL43 homologue 20121230 -9606 6160 RPL31 - L31 HGNC:10334|Ensembl:ENSG00000071082|HPRD:17994|Vega:OTTHUMG00000130687 2 2q11.2 ribosomal protein L31 protein-coding RPL31 ribosomal protein L31 O 60S ribosomal protein L31 20121230 -9606 6161 RPL32 PP9932 L32 HGNC:10336|Ensembl:ENSG00000144713|HPRD:17995|Vega:OTTHUMG00000129804 3 3p25-p24 ribosomal protein L32 protein-coding RPL32 ribosomal protein L32 O 60S ribosomal protein L32 20121230 -9606 6163 RPL32P1 - RPL32-L|RPL32P|RPL32_6_681 HGNC:10339 6 6p21.3 ribosomal protein L32 pseudogene 1 pseudo RPL32P1 ribosomal protein L32 pseudogene 1 O - 20121230 -9606 6164 RPL34 - L34 HGNC:10340|Ensembl:ENSG00000109475|HPRD:17996|Vega:OTTHUMG00000131839 4 4q25 ribosomal protein L34 protein-coding RPL34 ribosomal protein L34 O 60S ribosomal protein L34|leukemia-associated protein 20121230 -9606 6165 RPL35A GIG33 DBA5|L35A HGNC:10345|MIM:180468|Ensembl:ENSG00000182899|HPRD:01596|Vega:OTTHUMG00000155386 3 3q29 ribosomal protein L35a protein-coding RPL35A ribosomal protein L35a O 60S ribosomal protein L35a|cell growth-inhibiting gene 33 protein 20121230 -9606 6166 RPL36AL - RPL36A HGNC:10346|MIM:180469|Ensembl:ENSG00000165502|HPRD:01597|Vega:OTTHUMG00000152330 14 14q21 ribosomal protein L36a-like protein-coding RPL36AL ribosomal protein L36a-like O 60S ribosomal protein L36a-like|ribosomal protein HL44 20121230 -9606 6167 RPL37 - L37 HGNC:10347|MIM:604181|Ensembl:ENSG00000145592|HPRD:16047|Vega:OTTHUMG00000094774 5 5p13 ribosomal protein L37 protein-coding RPL37 ribosomal protein L37 O 60S ribosomal protein L37|60S ribosomal protein L37a|G1.16 20121230 -9606 6168 RPL37A - L37A HGNC:10348|MIM:613314|Ensembl:ENSG00000197756|HPRD:17997|Vega:OTTHUMG00000133052 2 2q35 ribosomal protein L37a protein-coding RPL37A ribosomal protein L37a O 60S ribosomal protein L37a 20121230 -9606 6169 RPL38 - L38 HGNC:10349|MIM:604182|Ensembl:ENSG00000172809|HPRD:16048|Vega:OTTHUMG00000166016 17 17q25.1 ribosomal protein L38 protein-coding RPL38 ribosomal protein L38 O 60S ribosomal protein L38 20121230 -9606 6170 RPL39 - L39 HGNC:10350|MIM:601904|Ensembl:ENSG00000198918|HPRD:03546|Vega:OTTHUMG00000022278 X Xq24 ribosomal protein L39 protein-coding RPL39 ribosomal protein L39 O 60S ribosomal protein L39 20121230 -9606 6171 RPL41 - L41 HGNC:10354|MIM:613315|Ensembl:ENSG00000229117|HPRD:17999|Vega:OTTHUMG00000170183 12 12q13 ribosomal protein L41 protein-coding RPL41 ribosomal protein L41 O 60S ribosomal protein L41|HG12 protein|homologue of yeast ribosomal protein YL41 20121230 -9606 6172 RPL41P5 - RPL41L HGNC:10355 12 12q22 ribosomal protein L41 pseudogene 5 pseudo RPL41P5 ribosomal protein L41 pseudogene 5 O - 20121230 -9606 6173 RPL36A RP1-164F3.1 L36A|L44L|MIG6|RPL44 HGNC:10359|Ensembl:ENSG00000241343|HPRD:06709|Vega:OTTHUMG00000022027 X Xq22.1 ribosomal protein L36a protein-coding RPL36A ribosomal protein L36a O 60S ribosomal protein L36a|60S ribosomal protein L44|L44-like ribosomal protein|cell growth-inhibiting gene 15 protein|cell migration-inducing gene 6 protein|dJ164F3.3 (ribosomal protein L44) 20121230 -9606 6174 RPL7P - RPL17P|RPL7_11_628 HGNC:10367 5 5q33.3 ribosomal protein L7 pseudogene pseudo RPL7P ribosomal protein L7 pseudogene O - 20121230 -9606 6175 RPLP0 - L10E|LP0|P0|PRLP0|RPP0 HGNC:10371|MIM:180510|Ensembl:ENSG00000089157|HPRD:01610|Vega:OTTHUMG00000169317 12 12q24.2 ribosomal protein, large, P0 protein-coding RPLP0 ribosomal protein, large, P0 O 60S acidic ribosomal protein P0|60S ribosomal protein L10E|acidic ribosomal phosphoprotein P0 20121230 -9606 6176 RPLP1 - LP1|P1|RPP1 HGNC:10372|MIM:180520|Ensembl:ENSG00000137818|HPRD:01611|Vega:OTTHUMG00000172087 15 15q22 ribosomal protein, large, P1 protein-coding RPLP1 ribosomal protein, large, P1 O 60S acidic ribosomal protein P1|acidic ribosomal phosphoprotein P1 20121230 -9606 6181 RPLP2 - D11S2243E|LP2|P2|RPP2 HGNC:10377|MIM:180530|Ensembl:ENSG00000177600|HPRD:01612|Vega:OTTHUMG00000133317 11 11p15.5 ribosomal protein, large, P2 protein-coding RPLP2 ribosomal protein, large, P2 O 60S acidic ribosomal protein P2|acidic ribosomal phosphoprotein P2|renal carcinoma antigen NY-REN-44 20121230 -9606 6182 MRPL12 - 5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12 HGNC:10378|MIM:602375|Ensembl:ENSG00000262814|HPRD:03849|Vega:OTTHUMG00000178171 17 17q25 mitochondrial ribosomal protein L12 protein-coding MRPL12 mitochondrial ribosomal protein L12 O 39S ribosomal protein L12, mitochondrial|MRP-L12 20121230 -9606 6183 MRPS12 - MPR-S12|MT-RPS12|RPMS12|RPS12|RPSM12 HGNC:10380|MIM:603021|Ensembl:ENSG00000128626|HPRD:04316 19 19q13.1-q13.2 mitochondrial ribosomal protein S12 protein-coding MRPS12 mitochondrial ribosomal protein S12 O 28S ribosomal protein S12, mitochondrial|MRP-S12|S12mt 20121230 -9606 6184 RPN1 - OST1|RBPH1 HGNC:10381|MIM:180470|Ensembl:ENSG00000163902|HPRD:01598|Vega:OTTHUMG00000159691 3 3q21.3 ribophorin I protein-coding RPN1 ribophorin I O RPN-I|dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit|dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1|dolichyl-diphosphooligosaccharide-protein glycosyltransferase 67 kDa subunit|oligosaccharyltransferase 1 homolog|ribophorin-1 20121230 -9606 6185 RPN2 RP3-343K2.2 RIBIIR|RPN-II|RPNII|SWP1 HGNC:10382|MIM:180490|Ensembl:ENSG00000118705|HPRD:01609|Vega:OTTHUMG00000032409 20 20q12-q13.1 ribophorin II protein-coding RPN2 ribophorin II O dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDa subunit|dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2|ribophorin-2 20121230 -9606 6187 RPS2 - LLREP3|S2 HGNC:10404|MIM:603624|Ensembl:ENSG00000140988|HPRD:04690|Vega:OTTHUMG00000128708 16 16p13.3 ribosomal protein S2 protein-coding RPS2 ribosomal protein S2 O 40S ribosomal protein S2|40S ribosomal protein S4|OK/KNS-cl.6|protein LLRep3 20121230 -9606 6188 RPS3 OK/SW-cl.26 S3 HGNC:10420|MIM:600454|Ensembl:ENSG00000149273|HPRD:10941|Vega:OTTHUMG00000165448 11 11q13.3-q13.5 ribosomal protein S3 protein-coding RPS3 ribosomal protein S3 O 40S ribosomal protein S3|IMR-90 ribosomal protein S3 20121230 -9606 6189 RPS3A - FTE1|MFTL|S3A HGNC:10421|MIM:180478|Ensembl:ENSG00000145425|HPRD:01606|Vega:OTTHUMG00000161445 4 4q31.2-q31.3 ribosomal protein S3A protein-coding RPS3A ribosomal protein S3A O 40S ribosomal protein S3a|fte-1|v-fos transformation effector protein 1 20121230 -9606 6191 RPS4X - CCG2|DXS306|RPS4|S4|SCAR|SCR10 HGNC:10424|MIM:312760|Ensembl:ENSG00000198034|HPRD:02427|Vega:OTTHUMG00000021813 X Xq13.1 ribosomal protein S4, X-linked protein-coding RPS4X ribosomal protein S4, X-linked O 40S ribosomal protein S4, X isoform|cell cycle gene 2|ribosomal protein S4X isoform|single copy abundant mRNA protein|single-copy abundant mRNA 20121230 -9606 6192 RPS4Y1 PRO2646 RPS4Y|S4 HGNC:10425|MIM:470000|HPRD:15963 Y Yp11.3 ribosomal protein S4, Y-linked 1 protein-coding RPS4Y1 ribosomal protein S4, Y-linked 1 O 40S ribosomal protein S4, Y|40S ribosomal protein S4, Y isoform 1|ribosomal protein S4Y 20121230 -9606 6193 RPS5 - S5 HGNC:10426|MIM:603630|Ensembl:ENSG00000083845|HPRD:04695 19 19q13.4 ribosomal protein S5 protein-coding RPS5 ribosomal protein S5 O 40S ribosomal protein S5 20121230 -9606 6194 RPS6 RP11-513M16.6 S6 HGNC:10429|MIM:180460|Ensembl:ENSG00000137154|HPRD:01592|Vega:OTTHUMG00000019642 9 9p21 ribosomal protein S6 protein-coding RPS6 ribosomal protein S6 O 40S ribosomal protein S6|phosphoprotein NP33 20121230 -9606 6195 RPS6KA1 RP11-492M19.2 HU-1|MAPKAPK1A|RSK|RSK1 HGNC:10430|MIM:601684|Ensembl:ENSG00000117676|HPRD:03402|Vega:OTTHUMG00000004003 1 1p ribosomal protein S6 kinase, 90kDa, polypeptide 1 protein-coding RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 O 90 kDa ribosomal protein S6 kinase 1|MAP kinase-activated protein kinase 1a|MAPK-activated protein kinase 1a|MAPKAP kinase 1a|MAPKAPK-1a|RSK-1|S6K-alpha 1|S6K-alpha-1|dJ590P13.1 (ribosomal protein S6 kinase, 90kD, polypeptide 1)|p90-RSK 1|p90RSK1|p90S6K|ribosomal S6 kinase 1|ribosomal protein S6 kinase alpha 1|ribosomal protein S6 kinase alpha-1 20121230 -9606 6196 RPS6KA2 RP1-168L15.2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3 HGNC:10431|MIM:601685|Ensembl:ENSG00000071242|HPRD:03403|Vega:OTTHUMG00000016007 6 6q27 ribosomal protein S6 kinase, 90kDa, polypeptide 2 protein-coding RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 O 90 kDa ribosomal protein S6 kinase 2|MAP kinase-activated protein kinase 1c|MAPK-activated protein kinase 1c|MAPKAP kinase 1c|MAPKAPK-1c|RSK-3|S6K-alpha-2|p90-RSK 2|p90RSK2|ribosomal S6 kinase 3|ribosomal protein S6 kinase alpha 2|ribosomal protein S6 kinase alpha-2 20121230 -9606 6197 RPS6KA3 RP11-393H10.3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 HGNC:10432|MIM:300075|Ensembl:ENSG00000177189|HPRD:02092|Vega:OTTHUMG00000021231 X Xp22.2-p22.1 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein-coding RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 O MAP kinase-activated protein kinase 1b|MAPK-activated protein kinase 1b|MAPKAP kinase 1b|MAPKAPK-1b|RSK-2|S6K-alpha-3|insulin-stimulated protein kinase 1|p90-RSK 3|ribosomal S6 kinase 2|ribosomal protein S6 kinase alpha-3 20121230 -9606 6198 RPS6KB1 - PS6K|S6K|S6K1|STK14A|p70(S6K)-alpha|p70-S6K|p70-alpha HGNC:10436|MIM:608938|Ensembl:ENSG00000108443|HPRD:10202|Vega:OTTHUMG00000150642 17 17q23.1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 protein-coding RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 O P70S6K1|S6K-beta-1|p70 S6KA|ribosomal protein S6 kinase beta-1|serine/threonine kinase 14 alpha|serine/threonine-protein kinase 14A 20121230 -9606 6199 RPS6KB2 - KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|SRK|STK14B|p70(S6K)-beta|p70S6Kb HGNC:10437|MIM:608939|Ensembl:ENSG00000175634|HPRD:10203|Vega:OTTHUMG00000167673 11 11q13.2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 protein-coding RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 O 70 kDa ribosomal protein S6 kinase 2|P70S6K2|S6 kinase-related kinase|S6K-beta|S6K-beta-2|p70 S6 kinase beta|p70 S6K-beta|p70 S6KB|p70 ribosomal S6 kinase beta|p70-S6K 2|ribosomal protein S6 kinase beta-2|serine/threonine-protein kinase 14 beta|serine/threonine-protein kinase 14B 20121230 -9606 6200 RPS6KB3 - 70kD HGNC:10438 - - ribosomal protein S6 kinase, 70kDa, polypeptide 3 protein-coding RPS6KB3 ribosomal protein S6 kinase, 70kDa, polypeptide 3 O polypeptide 3 20090811 -9606 6201 RPS7 - DBA8|S7 HGNC:10440|MIM:603658|Ensembl:ENSG00000171863|HPRD:04712|Vega:OTTHUMG00000090305 2 2p25 ribosomal protein S7 protein-coding RPS7 ribosomal protein S7 O 40S ribosomal protein S7 20121230 -9606 6202 RPS8 RP11-269F19.3 S8 HGNC:10441|MIM:600357|Ensembl:ENSG00000142937|HPRD:15969|Vega:OTTHUMG00000008494 1 1p34.1-p32 ribosomal protein S8 protein-coding RPS8 ribosomal protein S8 O 40S ribosomal protein S8|OK/SW-cl.83 20121230 -9606 6203 RPS9 XXbac-BCX105G6.6 S9 HGNC:10442|MIM:603631|Ensembl:ENSG00000170889|HPRD:04696|Vega:OTTHUMG00000066618 19 19q13.4 ribosomal protein S9 protein-coding RPS9 ribosomal protein S9 O 40S ribosomal protein S9 20121230 -9606 6204 RPS10 RP11-375E1__A.4 DBA9|S10 HGNC:10383|MIM:603632|Ensembl:ENSG00000124614|HPRD:04697|Vega:OTTHUMG00000014546 6 6p21.31 ribosomal protein S10 protein-coding RPS10 ribosomal protein S10 O 40S ribosomal protein S10 20121230 -9606 6205 RPS11 - S11 HGNC:10384|MIM:180471|Ensembl:ENSG00000142534|HPRD:01599 19 19q13.3 ribosomal protein S11 protein-coding RPS11 ribosomal protein S11 O 40S ribosomal protein S11 20121230 -9606 6206 RPS12 - S12 HGNC:10385|MIM:603660|Ensembl:ENSG00000112306|HPRD:04714|Vega:OTTHUMG00000015593 6 6q23.2 ribosomal protein S12 protein-coding RPS12 ribosomal protein S12 O 40S ribosomal protein S12 20121230 -9606 6207 RPS13 - S13 HGNC:10386|MIM:180476|Ensembl:ENSG00000110700|HPRD:01604|Vega:OTTHUMG00000165988 11 11p15 ribosomal protein S13 protein-coding RPS13 ribosomal protein S13 O 40S ribosomal protein S13 20121230 -9606 6208 RPS14 PRO2640 EMTB|S14 HGNC:10387|MIM:130620|Ensembl:ENSG00000164587|HPRD:00562|Vega:OTTHUMG00000130080 5 5q31-q33 ribosomal protein S14 protein-coding RPS14 ribosomal protein S14 O 40S ribosomal protein S14|emetine resistance 20121230 -9606 6209 RPS15 - RIG|S15 HGNC:10388|MIM:180535|Ensembl:ENSG00000115268|HPRD:01613|Vega:OTTHUMG00000140099 19 19p13.3 ribosomal protein S15 protein-coding RPS15 ribosomal protein S15 O 40S ribosomal protein S15|homolog of rat insulinoma|insulinoma protein 20121230 -9606 6210 RPS15A OK/SW-cl.82 S15a HGNC:10389|MIM:603674|Ensembl:ENSG00000134419|HPRD:04723|Vega:OTTHUMG00000131365 16 16p ribosomal protein S15a protein-coding RPS15A ribosomal protein S15a O 40S ribosomal protein S15a|up-regulated by HBV X protein 20121230 -9606 6217 RPS16 - S16 HGNC:10396|MIM:603675|Ensembl:ENSG00000105193|HPRD:04724 19 19q13.1 ribosomal protein S16 protein-coding RPS16 ribosomal protein S16 O 40S ribosomal protein S16 20121230 -9606 6218 RPS17 - DBA4|RPS17L|RPS17L1|RPS17L2|S17 HGNC:10397|MIM:180472|Ensembl:ENSG00000184779|HPRD:01600|Vega:OTTHUMG00000172543 15 15q ribosomal protein S17 protein-coding RPS17 ribosomal protein S17 O 40S ribosomal protein S17 20121222 -9606 6219 RPS17P2 - RPS17A|RPS17L1|RPS17_5_604 HGNC:10398 5 5q23.1 ribosomal protein S17 pseudogene 2 pseudo RPS17P2 ribosomal protein S17 pseudogene 2 O - 20121230 -9606 6222 RPS18 DADB-159G18.1 D6S218E|HKE3|KE-3|KE3|S18 HGNC:10401|MIM:180473|Ensembl:ENSG00000231500|HPRD:01601|Vega:OTTHUMG00000031053 6 6p21.3 ribosomal protein S18 protein-coding RPS18 ribosomal protein S18 O 40S ribosomal protein S18|rhabdomyosarcoma antigen MU-RMS-40.21 20121230 -9606 6223 RPS19 - DBA|DBA1|S19 HGNC:10402|MIM:603474|Ensembl:ENSG00000105372|HPRD:04591 19 19q13.2 ribosomal protein S19 protein-coding RPS19 ribosomal protein S19 O 40S ribosomal protein S19 20121230 -9606 6224 RPS20 - S20 HGNC:10405|MIM:603682|Ensembl:ENSG00000008988|HPRD:04728|Vega:OTTHUMG00000164297 8 8q12 ribosomal protein S20 protein-coding RPS20 ribosomal protein S20 O 40S ribosomal protein S20 20121230 -9606 6225 RPS20P3 - RPS20A|RPS20_8_599 HGNC:10406|MIM:180463 5 5q21.3 ribosomal protein S20 pseudogene 3 pseudo RPS20P3 ribosomal protein S20 pseudogene 3 O - 20121230 -9606 6226 RPS20P4 - RPS20B|RPS20_6_627 HGNC:10407|MIM:180464 5 5q33-qter ribosomal protein S20 pseudogene 4 pseudo RPS20P4 ribosomal protein S20 pseudogene 4 O - 20121230 -9606 6227 RPS21 RP5-908M14.8 S21 HGNC:10409|MIM:180477|Ensembl:ENSG00000171858|HPRD:01605|Vega:OTTHUMG00000032915 20 20q13.3 ribosomal protein S21 protein-coding RPS21 ribosomal protein S21 O 40S ribosomal protein S21|8.2 kDa differentiation factor 20121230 -9606 6228 RPS23 - S23 HGNC:10410|MIM:603683|Ensembl:ENSG00000186468|HPRD:04729|Vega:OTTHUMG00000162557 5 5q14.2 ribosomal protein S23 protein-coding RPS23 ribosomal protein S23 O 40S ribosomal protein S23|homolog of yeast ribosomal protein S28 20121230 -9606 6229 RPS24 RP11-6P10.1 DBA3|S24 HGNC:10411|MIM:602412|Ensembl:ENSG00000138326|HPRD:03877|Vega:OTTHUMG00000018549 10 10q22 ribosomal protein S24 protein-coding RPS24 ribosomal protein S24 O 40S ribosomal protein S24 20121230 -9606 6230 RPS25 - S25 HGNC:10413|MIM:180465|Ensembl:ENSG00000118181|HPRD:01593|Vega:OTTHUMG00000166350 11 11q23.3 ribosomal protein S25 protein-coding RPS25 ribosomal protein S25 O 40S ribosomal protein S25 20121230 -9606 6231 RPS26 RP11-151A6.3 DBA10|S26 HGNC:10414|MIM:603701|Ensembl:ENSG00000197728|HPRD:04743|Vega:OTTHUMG00000170139 12 12q13 ribosomal protein S26 protein-coding RPS26 ribosomal protein S26 O 40S ribosomal protein S26 20121230 -9606 6232 RPS27 RP11-422P24.3 MPS-1|MPS1|S27 HGNC:10416|MIM:603702|Ensembl:ENSG00000177954|HPRD:04744|Vega:OTTHUMG00000036591 1 1q21 ribosomal protein S27 protein-coding RPS27 ribosomal protein S27 O 40S ribosomal protein S27|metallopan-stimulin 1|metallopanstimulin 1 20121230 -9606 6233 RPS27A - CEP80|S27A|UBA80|UBC|UBCEP1|UBCEP80 HGNC:10417|MIM:191343|Ensembl:ENSG00000143947|HPRD:01878|Vega:OTTHUMG00000151919 2 2p16 ribosomal protein S27a protein-coding RPS27A ribosomal protein S27a O 40S ribosomal protein S27a|ubiquitin C|ubiquitin and ribosomal protein S27a|ubiquitin carboxyl extension protein 80|ubiquitin-40S ribosomal protein S27a|ubiquitin-CEP80 20121230 -9606 6234 RPS28 - S28 HGNC:10418|MIM:603685|Ensembl:ENSG00000233927|HPRD:04731 19 19p13.2 ribosomal protein S28 protein-coding RPS28 ribosomal protein S28 O 40S ribosomal protein S28 20121230 -9606 6235 RPS29 - S29 HGNC:10419|MIM:603633|Ensembl:ENSG00000213741|HPRD:04698|Vega:OTTHUMG00000140272 14 14q ribosomal protein S29 protein-coding RPS29 ribosomal protein S29 O 40S ribosomal protein S29 20121230 -9606 6236 RRAD - RAD|RAD1|REM3 HGNC:10446|MIM:179503|Ensembl:ENSG00000166592|HPRD:01536|Vega:OTTHUMG00000137511 16 16q22 Ras-related associated with diabetes protein-coding RRAD Ras-related associated with diabetes O GTP-binding protein RAD|RAS (RAD and GEM) like GTP binding 3|ras associated with diabetes 20121230 -9606 6237 RRAS - - HGNC:10447|MIM:165090|Ensembl:ENSG00000126458|HPRD:01299 19 19q13.3-qter related RAS viral (r-ras) oncogene homolog protein-coding RRAS related RAS viral (r-ras) oncogene homolog O Oncogene RRAS|p23|ras-related protein R-Ras 20121230 -9606 6238 RRBP1 RP11-462D18.3 ES/130|ES130|RRp|hES HGNC:10448|MIM:601418|Ensembl:ENSG00000125844|HPRD:11796|Vega:OTTHUMG00000031945 20 20p12 ribosome binding protein 1 protein-coding RRBP1 ribosome binding protein 1 O 180 kDa ribosome receptor homolog|ES/130-related protein|ribosome binding protein 1 homolog 180kDa (dog)|ribosome receptor protein|ribosome-binding protein 1 20121230 -9606 6239 RREB1 RP11-69L16.1 FINB|HNT|LZ321|RREB-1|Zep-1 HGNC:10449|MIM:602209|Ensembl:ENSG00000124782|HPRD:03733|Vega:OTTHUMG00000014201 6 6p25 ras responsive element binding protein 1 protein-coding RREB1 ras responsive element binding protein 1 O DNA-binding protein|finger protein in nuclear bodies|hindsight homolog|raf-responsive zinc finger protein LZ321|ras-responsive element-binding protein 1|zinc finger motif enhancer binding protein 1|zinc finger motif enhancer-binding protein 1|zinc finger motif-enhancer binding-protein 1 20121230 -9606 6240 RRM1 - R1|RIR1|RR1 HGNC:10451|MIM:180410|Ensembl:ENSG00000167325|HPRD:01588|Vega:OTTHUMG00000133361 11 11p15.5 ribonucleotide reductase M1 protein-coding RRM1 ribonucleotide reductase M1 O ribonucleoside-diphosphate reductase large subunit|ribonucleoside-diphosphate reductase subunit M1|ribonucleotide reductase M1 polypeptide|ribonucleotide reductase, R1 subunit|ribonucleotide reductase, large subunit 20121230 -9606 6241 RRM2 - R2|RR2|RR2M HGNC:10452|MIM:180390|Ensembl:ENSG00000171848|HPRD:01587|Vega:OTTHUMG00000090449 2 2p25-p24 ribonucleotide reductase M2 protein-coding RRM2 ribonucleotide reductase M2 O ribonucleoside-diphosphate reductase subunit M2|ribonucleotide reductase M2 polypeptide|ribonucleotide reductase small chain|ribonucleotide reductase small subunit 20121230 -9606 6242 RTKN - - HGNC:10466|MIM:602288|Ensembl:ENSG00000114993|HPRD:03795|Vega:OTTHUMG00000129955 2 2p13.1 rhotekin protein-coding RTKN rhotekin O - 20121230 -9606 6244 RRM2P2 - - HGNC:10454 1 1q23.3 ribonucleotide reductase M2 polypeptide pseudogene 2 pseudo RRM2P2 ribonucleotide reductase M2 polypeptide pseudogene 2 O - 20121230 -9606 6245 RRM2P3 - - HGNC:10455 X Xp11.4 ribonucleotide reductase M2 polypeptide pseudogene 3 pseudo RRM2P3 ribonucleotide reductase M2 polypeptide pseudogene 3 O - 20121230 -9606 6246 RRM2P4 - - HGNC:10456 X Xq27 ribonucleotide reductase M2 polypeptide pseudogene 4 pseudo RRM2P4 ribonucleotide reductase M2 polypeptide pseudogene 4 O - 20121230 -9606 6247 RS1 RP1-245G19.1 RS|XLRS1 HGNC:10457|MIM:300839|Ensembl:ENSG00000102104|HPRD:02426|Vega:OTTHUMG00000021216 X Xp22.13 retinoschisin 1 protein-coding RS1 retinoschisin 1 O X-linked juvenile retinoschisis protein|retinoschisin 20121230 -9606 6248 RSC1A1 - RS1 HGNC:10458|MIM:601966|Ensembl:ENSG00000215695|HPRD:15994|Vega:OTTHUMG00000067830 1 1p36.1 regulatory solute carrier protein, family 1, member 1 protein-coding RSC1A1 regulatory solute carrier protein, family 1, member 1 O regulatory solute carrier protein family 1 member 1|transporter regulator RS1 20121230 -9606 6249 CLIP1 - CLIP|CLIP-170|CLIP170|CYLN1|RSN HGNC:10461|MIM:179838|Ensembl:ENSG00000130779|HPRD:01568|Vega:OTTHUMG00000168922 12 12q24.3 CAP-GLY domain containing linker protein 1 protein-coding CLIP1 CAP-GLY domain containing linker protein 1 O CAP-Gly domain-containing linker protein 1|cytoplasmic linker protein 1|cytoplasmic linker protein 170 alpha-2|cytoplasmic linker protein CLIP-170|restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 20121230 -9606 6251 RSU1 - RSP-1 HGNC:10464|MIM:179555|Ensembl:ENSG00000148484|HPRD:01551|Vega:OTTHUMG00000017740 10 10p13 Ras suppressor protein 1 protein-coding RSU1 Ras suppressor protein 1 O ras suppressor protein 1|ras suppressor protein 1 variant 1|ras suppressor protein 1 variant 2|ras suppressor protein 1 variant 3|rsu-1 20121230 -9606 6252 RTN1 - NSP HGNC:10467|MIM:600865|Ensembl:ENSG00000139970|HPRD:02921|Vega:OTTHUMG00000028947 14 14q23.1 reticulon 1 protein-coding RTN1 reticulon 1 O neuroendocrine-specific protein|reticulon-1 20121230 -9606 6253 RTN2 - NSP2|NSPL1|NSPLI|SPG12 HGNC:10468|MIM:603183|Ensembl:ENSG00000125744|HPRD:04421|Vega:OTTHUMG00000182123 19 19q13.32 reticulon 2 protein-coding RTN2 reticulon 2 O NSP-like protein 1|NSP-like protein I|neuroendocrine-specific protein-like I|reticulon-2 20121230 -9606 6255 RVNP2 - - HGNC:10476 Y - retroviral sequences NP2 unknown RVNP2 retroviral sequences NP2 O - 20090228 -9606 6256 RXRA - NR2B1 HGNC:10477|MIM:180245|Ensembl:ENSG00000186350|HPRD:01577|Vega:OTTHUMG00000020887 9 9q34.3 retinoid X receptor, alpha protein-coding RXRA retinoid X receptor, alpha O nuclear receptor subfamily 2 group B member 1|retinoic acid receptor RXR-alpha|retinoid X nuclear receptor alpha 20121230 -9606 6257 RXRB DADB-100D22.1 DAUDI6|H-2RIIBP|NR2B2|RCoR-1 HGNC:10478|MIM:180246|Ensembl:ENSG00000204231|HPRD:01578|Vega:OTTHUMG00000031298 6 6p21.3 retinoid X receptor, beta protein-coding RXRB retinoid X receptor, beta O MHC class I promoter binding protein|nuclear receptor subfamily 2 group B member 2|retinoic acid receptor RXR-beta 20121230 -9606 6258 RXRG - NR2B3|RXRC HGNC:10479|MIM:180247|Ensembl:ENSG00000143171|HPRD:01579|Vega:OTTHUMG00000034626 1 1q22-q23 retinoid X receptor, gamma protein-coding RXRG retinoid X receptor, gamma O nuclear receptor subfamily 2 group B member 3|retinoic acid receptor RXR-gamma 20121230 -9606 6259 RYK - D3S3195|JTK5|JTK5A|RYK1 HGNC:10481|MIM:600524|Ensembl:ENSG00000163785|HPRD:02751|Vega:OTTHUMG00000159750 3 3q22 receptor-like tyrosine kinase protein-coding RYK receptor-like tyrosine kinase O JTK5A protein tyrosine kinase|hydroxyaryl-protein kinase|tyrosine-protein kinase RYK 20121230 -9606 6260 RYKP1 - JTK5|JTK5B|RYKL1|RYKP HGNC:10482 17 17p13.2 receptor-like tyrosine kinase pseudogene 1 pseudo RYKP1 receptor-like tyrosine kinase pseudogene 1 O - 20121230 -9606 6261 RYR1 - CCO|MHS|MHS1|RYDR|RYR|RYR-1|SKRR HGNC:10483|MIM:180901|Ensembl:ENSG00000196218|HPRD:01618 19 19q13.1 ryanodine receptor 1 (skeletal) protein-coding RYR1 ryanodine receptor 1 (skeletal) O central core disease of muscle|ryanodine receptor 1|ryanodine receptor type1|sarcoplasmic reticulum calcium release channel|skeletal muscle calcium release channel|skeletal muscle ryanodine receptor|type 1 ryanodine receptor|type 1-like ryanodine receptor 20121230 -9606 6262 RYR2 RP4-626J7.1 ARVC2|ARVD2|RYR-2|RyR|VTSIP HGNC:10484|MIM:180902|Ensembl:ENSG00000198626|HPRD:01619|Vega:OTTHUMG00000039543 1 1q43 ryanodine receptor 2 (cardiac) protein-coding RYR2 ryanodine receptor 2 (cardiac) O cardiac muscle ryanodine receptor-calcium release channel|cardiac-type ryanodine receptor|islet-type ryanodine receptor|kidney-type ryanodine receptor|ryanodine receptor 2|type 2 ryanodine receptor 20121230 -9606 6263 RYR3 - - HGNC:10485|MIM:180903|Ensembl:ENSG00000198838|HPRD:01620|Vega:OTTHUMG00000172253 15 15q14-q15 ryanodine receptor 3 protein-coding RYR3 ryanodine receptor 3 O RYR-3|brain ryanodine receptor-calcium release channel|brain-type ryanodine receptor|type 3 ryanodine receptor 20121230 -9606 6264 S7 - SA7-2 HGNC:10509 7 - surface antigen (chromosome 7) 2 protein-coding S7 surface antigen (chromosome 7) 2 O - 20110624 -9606 6267 S11 - - HGNC:10505 X Xq26-q28 surface antigen (X-linked) 2 protein-coding S11 surface antigen (X-linked) 2 O - 20080828 -9606 6268 S12 - - HGNC:10506 X - surface antigen (X-linked) 3 protein-coding S12 surface antigen (X-linked) 3 O - 20080828 -9606 6271 S100A1 RP1-178F15.1 S100|S100-alpha|S100A HGNC:10486|MIM:176940|Ensembl:ENSG00000160678|HPRD:01489|Vega:OTTHUMG00000037041 1 1q21 S100 calcium binding protein A1 protein-coding S100A1 S100 calcium binding protein A1 O S-100 protein alpha chain|S-100 protein subunit alpha|S100 alpha|S100 calcium-binding protein A1|S100 protein, alpha polypeptide|protein S100-A1 20121230 -9606 6272 SORT1 - Gp95|LDLCQ6|NT3 HGNC:11186|MIM:602458|Ensembl:ENSG00000134243|HPRD:03910|Vega:OTTHUMG00000011999 1 1p13.3|1p21.3-p13.1 sortilin 1 protein-coding SORT1 sortilin 1 O 100 kDa NT receptor|NTR3|glycoprotein 95|neurotensin receptor 3|sortilin 20121230 -9606 6273 S100A2 RP11-49N14.8 CAN19|S100L HGNC:10492|MIM:176993|Ensembl:ENSG00000196754|HPRD:01508|Vega:OTTHUMG00000035031 1 1q21 S100 calcium binding protein A2 protein-coding S100A2 S100 calcium binding protein A2 O S100 calcium-binding protein A2|protein S100-A2 20121230 -9606 6274 S100A3 - S100E HGNC:10493|MIM:176992|Ensembl:ENSG00000188015|HPRD:01507|Vega:OTTHUMG00000013550 1 1q21 S100 calcium binding protein A3 protein-coding S100A3 S100 calcium binding protein A3 O S100 calcium-binding protein A3|protein S100-A3 20121230 -9606 6275 S100A4 - 18A2|42A|CAPL|FSP1|MTS1|P9KA|PEL98 HGNC:10494|MIM:114210|Ensembl:ENSG00000196154|HPRD:15914|Vega:OTTHUMG00000013546 1 1q21 S100 calcium binding protein A4 protein-coding S100A4 S100 calcium binding protein A4 O S100 calcium-binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog)|fibroblast-specific protein-1|leukemia multidrug resistance associated protein|malignant transformation suppression 1|placental calcium-binding protein|protein Mts1|protein S100-A4 20121230 -9606 6276 S100A5 - S100D HGNC:10495|MIM:176991|Ensembl:ENSG00000196420|HPRD:01506|Vega:OTTHUMG00000013547 1 1q21 S100 calcium binding protein A5 protein-coding S100A5 S100 calcium binding protein A5 O S100 calcium-binding protein A5|protein S100-A5 20121230 -9606 6277 S100A6 - 2A9|5B10|CABP|CACY|PRA HGNC:10496|MIM:114110|Ensembl:ENSG00000197956|HPRD:00237|Vega:OTTHUMG00000013549 1 1q21 S100 calcium binding protein A6 protein-coding S100A6 S100 calcium binding protein A6 O MLN 4|S100 calcium-binding protein A6 (calcyclin)|calcyclin|growth factor-inducible protein 2A9|prolactin receptor-associated protein|protein S100-A6 20121230 -9606 6278 S100A7 - PSOR1|S100A7c HGNC:10497|MIM:600353|Ensembl:ENSG00000143556|HPRD:02645|Vega:OTTHUMG00000013123 1 1q21 S100 calcium binding protein A7 protein-coding S100A7 S100 calcium binding protein A7 O S100 calcium-binding protein A7 (psoriasin 1)|protein S100-A7|psoriasin 1 20121230 -9606 6279 S100A8 - 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 HGNC:10498|MIM:123885|Ensembl:ENSG00000143546|HPRD:00471|Vega:OTTHUMG00000013124 1 1q21 S100 calcium binding protein A8 protein-coding S100A8 S100 calcium binding protein A8 O MRP-8|S100 calcium-binding protein A8 (calgranulin A)|calgranulin A|calgranulin-A|calprotectin L1L subunit|cystic fibrosis antigen|leukocyte L1 complex light chain|migration inhibitory factor-related protein 8|protein S100-A8|urinary stone protein band A 20121230 -9606 6280 S100A9 - 60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14 HGNC:10499|MIM:123886|Ensembl:ENSG00000163220|HPRD:00472|Vega:OTTHUMG00000013125 1 1q21 S100 calcium binding protein A9 protein-coding S100A9 S100 calcium binding protein A9 O MRP-14|S100 calcium-binding protein A9 (calgranulin B)|calgranulin B|calgranulin-B|calprotectin L1H subunit|leukocyte L1 complex heavy chain|migration inhibitory factor-related protein 14|protein S100-A9 20121230 -9606 6281 S100A10 - 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 HGNC:10487|MIM:114085|Ensembl:ENSG00000197747|HPRD:00232|Vega:OTTHUMG00000013068 1 1q21 S100 calcium binding protein A10 protein-coding S100A10 S100 calcium binding protein A10 O S100 calcium binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))|S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))|annexin II ligand, calpactin I, light polypeptide|annexin II tetramer (AIIt) p11 subunit|calpactin I light chain|calpactin-1 light chain|cellular ligand of annexin II|protein S100-A10 20121230 -9606 6282 S100A11 - MLN70|S100C HGNC:10488|MIM:603114|Ensembl:ENSG00000163191|HPRD:04385|Vega:OTTHUMG00000013069 1 1q21 S100 calcium binding protein A11 protein-coding S100A11 S100 calcium binding protein A11 O MLN 70|S100 calcium-binding protein A11 (calgizzarin)|calgizzarin|metastatic lymph node gene 70 protein|protein S100-A11|protein S100-C 20121230 -9606 6283 S100A12 - CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 HGNC:10489|MIM:603112|Ensembl:ENSG00000163221|HPRD:04383|Vega:OTTHUMG00000013127 1 1q21 S100 calcium binding protein A12 protein-coding S100A12 S100 calcium binding protein A12 O EN-RAGE|S100 calcium-binding protein A12 (calgranulin C)|calcium-binding protein in amniotic fluid 1|calgranulin C|calgranulin-C|extracellular newly identified RAGE-binding protein|migration inhibitory factor-related protein 6|neutrophil S100 protein|protein S100-A12 20121230 -9606 6284 S100A13 - - HGNC:10490|MIM:601989|Ensembl:ENSG00000189171|HPRD:03586 1 1q21 S100 calcium binding protein A13 protein-coding S100A13 S100 calcium binding protein A13 O S100 calcium-binding protein A13|protein S100-A13 20121230 -9606 6285 S100B - NEF|S100|S100-B|S100beta HGNC:10500|MIM:176990|Ensembl:ENSG00000160307|HPRD:01505|Vega:OTTHUMG00000090715 21 21q22.3 S100 calcium binding protein B protein-coding S100B S100 calcium binding protein B O S-100 calcium-binding protein, beta chain|S-100 protein subunit beta|S100 calcium-binding protein, beta (neural)|protein S100-B 20121230 -9606 6286 S100P - MIG9 HGNC:10504|MIM:600614|Ensembl:ENSG00000163993|HPRD:02792|Vega:OTTHUMG00000090491 4 4p16 S100 calcium binding protein P protein-coding S100P S100 calcium binding protein P O S100 calcium-binding protein P|migration-inducing gene 9|protein S100-E|protein S100-P 20121230 -9606 6287 SAA@ - SAA|SAA4 HGNC:10512 11 11p serum amyloid A1 cluster other SAA@ serum amyloid A1 cluster O - 20110116 -9606 6288 SAA1 - PIG4|SAA|SAA2|TP53I4 HGNC:10513|MIM:104750|Ensembl:ENSG00000173432|HPRD:00097|Vega:OTTHUMG00000166147 11 11p15.1 serum amyloid A1 protein-coding SAA1 serum amyloid A1 O serum amyloid A protein|serum amyloid A-1 protein|tumor protein p53 inducible protein 4 20121230 -9606 6289 SAA2 - - HGNC:10514|MIM:104751|Ensembl:ENSG00000134339|HPRD:00098|Vega:OTTHUMG00000166484 11 11p15.1-p14 serum amyloid A2 protein-coding SAA2 serum amyloid A2 O serum amyloid A-2 protein 20121230 -9606 6290 SAA3P - SAA3 HGNC:10515 11 11p15.1-p14 serum amyloid A3 pseudogene pseudo SAA3P serum amyloid A3 pseudogene O - 20121230 -9606 6291 SAA4 - C-SAA|CSAA HGNC:10516|MIM:104752|Ensembl:ENSG00000148965|HPRD:00099|Vega:OTTHUMG00000166483 11 11p15.1-p14 serum amyloid A4, constitutive protein-coding SAA4 serum amyloid A4, constitutive O constitutively expressed serum amyloid A protein|serum amyloid A-4 protein 20121230 -9606 6293 VPS52 DADB-91M20.1 ARE1|RP5-1033B10|SAC2|SACM2L|dJ1033B10.5 HGNC:10518|MIM:603443|Ensembl:ENSG00000223501|HPRD:09142|Vega:OTTHUMG00000031276 6 6p21.3 vacuolar protein sorting 52 homolog (S. cerevisiae) protein-coding VPS52 vacuolar protein sorting 52 homolog (S. cerevisiae) O SAC2 suppressor of actin mutations 2-like protein|vacuolar protein sorting-associated protein 52 homolog 20121230 -9606 6294 SAFB - HAP|HET|SAF-B1|SAFB1 HGNC:10520|MIM:602895|Ensembl:ENSG00000160633|HPRD:04205|Vega:OTTHUMG00000180502 19 19p13.3-p13.2 scaffold attachment factor B protein-coding SAFB scaffold attachment factor B O HSP27 ERE-TATA-binding protein|HSP27 estrogen response element-TATA box-binding protein|Hsp27 ERE-TATA binding protein|SAB-B1|SAF-B|glutathione S-transferase fusion protein|heat-shock protein (HSP27) estrogen response element and TATA box-binding protein|scaffold attachment factor B1 20121230 -9606 6295 SAG - RP47|S-AG HGNC:10521|MIM:181031|Ensembl:ENSG00000130561|HPRD:01625|Vega:OTTHUMG00000153213 2 2q37.1 S-antigen; retina and pineal gland (arrestin) protein-coding SAG S-antigen; retina and pineal gland (arrestin) O 48 kDa protein|S-arrestin|arrestin 1|retinal S-antigen (48 KDa protein)|rod photoreceptor arrestin 20121230 -9606 6296 ACSM3 - SA|SAH HGNC:10522|MIM:145505|Ensembl:ENSG00000005187|HPRD:07033|Vega:OTTHUMG00000131552 16 16p13.11 acyl-CoA synthetase medium-chain family member 3 protein-coding ACSM3 acyl-CoA synthetase medium-chain family member 3 O SA (rat hypertension-associated) homolog|SA hypertension-associated homolog|acyl-coenzyme A synthetase ACSM3, mitochondrial|butyrate--CoA ligase 3|butyryl-coenzyme A synthetase 3|middle-chain acyl-CoA synthetase 3|protein SA homolog 20121230 -9606 6297 SALL2 - HSAL2|Sal-2|ZNF795|p150(Sal2) HGNC:10526|MIM:602219|Ensembl:ENSG00000165821|HPRD:03743|Vega:OTTHUMG00000168826 14 14q11.1-q12 sal-like 2 (Drosophila) protein-coding SALL2 sal-like 2 (Drosophila) O sal-like protein 2|zinc finger protein 795|zinc finger protein SALL2|zinc finger protein Spalt-2 20121230 -9606 6298 SAI1 - MTS1|TFS1 HGNC:10523|MIM:154280 1 1pter-p22.1 suppression of anchorage independence 1 unknown SAI1 suppression of anchorage independence 1 O - 20080828 -9606 6299 SALL1 - HSAL1|Sal-1|TBS|ZNF794 HGNC:10524|MIM:602218|Ensembl:ENSG00000103449|HPRD:03742|Vega:OTTHUMG00000133176 16 16q12.1 sal-like 1 (Drosophila) protein-coding SALL1 sal-like 1 (Drosophila) O sal-like protein 1|spalt-like transcription factor 1|zinc finger protein 794|zinc finger protein SALL1|zinc finger protein Spalt-1 20121230 -9606 6300 MAPK12 - ERK3|ERK6|P38GAMMA|PRKM12|SAPK-3|SAPK3 HGNC:6874|MIM:602399|Ensembl:ENSG00000188130|HPRD:03868|Vega:OTTHUMG00000030145 22 22q13.33 mitogen-activated protein kinase 12 protein-coding MAPK12 mitogen-activated protein kinase 12 O ERK-6|MAP kinase 12|MAP kinase p38 gamma|MAPK 12|extracellular signal-regulated kinase 6|mitogen-activated protein kinase 3|mitogen-activated protein kinase p38 gamma|stress-activated protein kinase 3 20121230 -9606 6301 SARS RP11-352P4.2 SERRS|SERS HGNC:10537|MIM:607529|Ensembl:ENSG00000031698|HPRD:09605|Vega:OTTHUMG00000011726 1 1p13.3 seryl-tRNA synthetase protein-coding SARS seryl-tRNA synthetase O Seryl-tRNA Ser/Sec synthetase|serine tRNA ligase 1, cytoplasmic|serine--tRNA ligase, cytoplasmic|seryl-tRNA synthetase, cytoplasmic|seryl-tRNA(Ser/Sec) synthetase 20121230 -9606 6302 TSPAN31 - SAS HGNC:10539|MIM:181035|Ensembl:ENSG00000135452|HPRD:01626|Vega:OTTHUMG00000170381 12 12q13.3 tetraspanin 31 protein-coding TSPAN31 tetraspanin 31 O sarcoma amplified sequence|sarcoma-amplified sequence|tetraspanin-31|transmembrane 4 protein|tspan-31 20121230 -9606 6303 SAT1 - DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1 HGNC:10540|MIM:313020|Ensembl:ENSG00000130066|HPRD:02431|Vega:OTTHUMG00000021256 X Xp22.1 spermidine/spermine N1-acetyltransferase 1 protein-coding SAT1 spermidine/spermine N1-acetyltransferase 1 O diamine N-acetyltransferase 1|diamine acetyltransferase 1|polyamine N-acetyltransferase 1|putrescine acetyltransferase|spermidine/spermine N(1)-acetyltransferase 1|spermidine/spermine N1-acetyltransferase alpha 20121230 -9606 6304 SATB1 - - HGNC:10541|MIM:602075|Ensembl:ENSG00000182568|HPRD:03647|Vega:OTTHUMG00000129890 3 3p23 SATB homeobox 1 protein-coding SATB1 SATB homeobox 1 O DNA-binding protein SATB1|special AT-rich sequence binding protein 1 (binds to nuclear matrix/scaffold-associating DNA)|special AT-rich sequence-binding protein 1 20121230 -9606 6305 SBF1 C22:RP4-579N16.2 DENND7A|MTMR5 HGNC:10542|MIM:603560|Ensembl:ENSG00000100241|HPRD:06788|Vega:OTTHUMG00000150204 22 22q13.33 SET binding factor 1 protein-coding SBF1 SET binding factor 1 O DENN/MADD domain containing 7A|SET-binding factor 1|myotubularin related 5|myotubularin-related protein 5 20121230 -9606 6307 MSMO1 - DESP4|ERG25|SC4MOL HGNC:10545|MIM:607545|Ensembl:ENSG00000052802|HPRD:07396|Vega:OTTHUMG00000161126 4 4q32-q34 methylsterol monooxygenase 1 protein-coding MSMO1 methylsterol monooxygenase 1 O C-4 methyl sterol|C-4 methylsterol oxidase 20121230 -9606 6308 SC4MOP - DESP4P1 HGNC:10546 X Xp21.1 sterol-C4-methyl oxidase pseudogene pseudo SC4MOP sterol-C4-methyl oxidase pseudogene O - 20121230 -9606 6309 SC5DL - ERG3|S5DES|SC5D HGNC:10547|MIM:602286|Ensembl:ENSG00000109929|HPRD:09078|Vega:OTTHUMG00000166068 11 11q23.3 sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like protein-coding SC5DL sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like O 3beta-hydroxysteroid-delta5-desaturase|C-5 sterol desaturase|delta(7)-sterol 5-desaturase|fungal ERG3, delta-5-desaturase-like|lathosterol 5-desaturase|lathosterol dehydrogenase|lathosterol oxidase 20121230 -9606 6310 ATXN1 - ATX1|D6S504E|SCA1 HGNC:10548|MIM:601556|Ensembl:ENSG00000124788|HPRD:03333|Vega:OTTHUMG00000014303 6 6p23 ataxin 1 protein-coding ATXN1 ataxin 1 O ataxin-1|spinocerebellar ataxia type 1 protein 20121230 -9606 6311 ATXN2 - ASL13|ATX2|SCA2|TNRC13 HGNC:10555|MIM:601517|Ensembl:ENSG00000204842|HPRD:03307|Vega:OTTHUMG00000133475 12 12q24.1 ataxin 2 protein-coding ATXN2 ataxin 2 O ataxin-2|spinocerebellar ataxia type 2 protein|trinucleotide repeat containing 13|trinucleotide repeat-containing gene 13 protein 20121230 -9606 6314 ATXN7 - ADCAII|OPCA3|SCA7 HGNC:10560|MIM:607640|Ensembl:ENSG00000163635|HPRD:06365|Vega:OTTHUMG00000158763 3 3p21.1-p12 ataxin 7 protein-coding ATXN7 ataxin 7 O ataxin-7|spinocerebellar ataxia type 7 protein 20121230 -9606 6315 ATXN8OS - KLHL1AS|NCRNA00003|SCA8 HGNC:10561|MIM:603680 13 13q21 ATXN8 opposite strand (non-protein coding) miscRNA ATXN8OS ATXN8 opposite strand (non-protein coding) O - 20121230 -9606 6317 SERPINB3 - HsT1196|SCC|SCCA-1|SCCA-PD|SCCA1|T4-A HGNC:10569|MIM:600517|Ensembl:ENSG00000057149|HPRD:02745|Vega:OTTHUMG00000060403 18 18q21.3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 protein-coding SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 O protein T4-A|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3|serpin B3|squamous cell carcinoma antigen 1 20121230 -9606 6318 SERPINB4 - LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 HGNC:10570|MIM:600518|Ensembl:ENSG00000206073|HPRD:02746|Vega:OTTHUMG00000060405 18 18q21.3 serpin peptidase inhibitor, clade B (ovalbumin), member 4 protein-coding SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 O PI-11|SCCA2/SCCA1 fusion protein|peptidase inhibitor 11|protease inhibitor (leucine-serpin)|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 4|serpin B4|squamous cell carcinoma antigen 1|squamous cell carcinoma antigen 2 20121230 -9606 6319 SCD PRO1933 FADS5|MSTP008|SCD1|SCDOS HGNC:10571|MIM:604031|Ensembl:ENSG00000099194|HPRD:04941|Vega:OTTHUMG00000018906 10 10q24.31 stearoyl-CoA desaturase (delta-9-desaturase) protein-coding SCD stearoyl-CoA desaturase (delta-9-desaturase) O acyl-CoA desaturase|delta(9)-desaturase|delta-9 desaturase|delta-9-desaturase|fatty acid desaturase|predicted protein of HQ0998|stearoyl-CoA desaturase opposite strand 20121230 -9606 6320 CLEC11A - CLECSF3|LSLCL|P47|SCGF HGNC:10576|MIM:604713|Ensembl:ENSG00000105472|HPRD:05277 19 19q13.3 C-type lectin domain family 11, member A protein-coding CLEC11A C-type lectin domain family 11, member A O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 3|C-type lectin domain family 11 member A|C-type lectin superfamily member 3|lymphocyte secreted C-type lectin|lymphocyte secreted long form of C-type lectin|stem cell growth factor|stem cell growth factor; lymphocyte secreted C-type lectin 20121230 -9606 6322 SCML1 RP3-389A20.1 - HGNC:10580|MIM:300227|Ensembl:ENSG00000047634|HPRD:02205|Vega:OTTHUMG00000021206 X Xp22 sex comb on midleg-like 1 (Drosophila) protein-coding SCML1 sex comb on midleg-like 1 (Drosophila) O sex comb on midleg-like protein 1 20121230 -9606 6323 SCN1A - EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI HGNC:10585|MIM:182389|Ensembl:ENSG00000144285|HPRD:01669|Vega:OTTHUMG00000044173 2 2q24.3 sodium channel, voltage-gated, type I, alpha subunit protein-coding SCN1A sodium channel, voltage-gated, type I, alpha subunit O sodium channel protein type 1 subunit alpha|sodium channel protein type I subunit alpha|sodium channel protein, brain I alpha subunit|sodium channel voltage gated type 1 alpha subunit|sodium channel, voltage-gated, type I, alpha polypeptide|voltage-gated sodium channel subunit alpha Nav1.1 20121230 -9606 6324 SCN1B - GEFSP1 HGNC:10586|MIM:600235|Ensembl:ENSG00000105711|HPRD:02581 19 19q13.1 sodium channel, voltage-gated, type I, beta subunit protein-coding SCN1B sodium channel, voltage-gated, type I, beta subunit O sodium channel beta-1 subunit|sodium channel subunit beta-1 20121230 -9606 6326 SCN2A - BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 HGNC:10588|MIM:182390|Ensembl:ENSG00000136531|HPRD:03133|Vega:OTTHUMG00000044172 2 2q24.3 sodium channel, voltage-gated, type II, alpha subunit protein-coding SCN2A sodium channel, voltage-gated, type II, alpha subunit O HBSC II|sodium channel protein brain II subunit alpha|sodium channel protein type 2 subunit alpha|sodium channel protein type II subunit alpha|sodium channel protein, brain type 2 alpha subunit|sodium channel, voltage-gated, type II, alpha 1 polypeptide|sodium channel, voltage-gated, type II, alpha 2 polypeptide|voltage-gated sodium channel subtype II|voltage-gated sodium channel subunit alpha Nav1.2 20121230 -9606 6327 SCN2B UNQ326/PRO386 - HGNC:10589|MIM:601327|Ensembl:ENSG00000149575|HPRD:03208|Vega:OTTHUMG00000048248 11 11q23 sodium channel, voltage-gated, type II, beta subunit protein-coding SCN2B sodium channel, voltage-gated, type II, beta subunit O neuronal voltage-gated sodium channel beta 2 subunit|sodium channel beta 2 subunit|sodium channel subunit beta-2|sodium channel, voltage-gated, type II, beta polypeptide 20121230 -9606 6328 SCN3A - NAC3|Nav1.3 HGNC:10590|MIM:182391|Ensembl:ENSG00000153253|HPRD:01671|Vega:OTTHUMG00000044171 2 2q24 sodium channel, voltage-gated, type III, alpha subunit protein-coding SCN3A sodium channel, voltage-gated, type III, alpha subunit O brain III voltage-gated sodium channel|sodium channel protein brain III subunit alpha|sodium channel protein type 3 subunit alpha|sodium channel protein type III subunit alpha|sodium channel, voltage-gated, type III, alpha polypeptide|voltage-gated sodium channel subtype III|voltage-gated sodium channel subunit alpha Nav1.3 20121230 -9606 6329 SCN4A - HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1 HGNC:10591|MIM:603967|Ensembl:ENSG00000007314|HPRD:04912|Vega:OTTHUMG00000179046 17 17q23.3 sodium channel, voltage-gated, type IV, alpha subunit protein-coding SCN4A sodium channel, voltage-gated, type IV, alpha subunit O skeletal muscle voltage-dependent sodium channel type IV alpha subunit|sodium channel protein skeletal muscle subunit alpha|sodium channel protein type 4 subunit alpha|sodium channel protein type IV subunit alpha|voltage-gated sodium channel subunit alpha Nav1.4 20121230 -9606 6330 SCN4B - LQT10|Navbeta4 HGNC:10592|MIM:608256|Ensembl:ENSG00000177098|HPRD:09749|Vega:OTTHUMG00000166994 11 11q23.3 sodium channel, voltage-gated, type IV, beta subunit protein-coding SCN4B sodium channel, voltage-gated, type IV, beta subunit O sodium channel subunit beta-4 20121230 -9606 6331 SCN5A - CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 HGNC:10593|MIM:600163|Ensembl:ENSG00000183873|HPRD:02543|Vega:OTTHUMG00000156166 3 3p21 sodium channel, voltage-gated, type V, alpha subunit protein-coding SCN5A sodium channel, voltage-gated, type V, alpha subunit O cardiac tetrodotoxin-insensitive voltage-dependent sodium channel alpha subunit|sodium channel protein cardiac muscle subunit alpha|sodium channel protein type 5 subunit alpha|voltage-gated sodium channel subunit alpha Nav1.5 20121230 -9606 6332 SCN7A - NaG|Nav2.1|Nav2.2|SCN6A HGNC:10594|MIM:182392|Ensembl:ENSG00000136546|HPRD:08355|Vega:OTTHUMG00000154078 2 2q21-q23 sodium channel, voltage-gated, type VII, alpha subunit protein-coding SCN7A sodium channel, voltage-gated, type VII, alpha subunit O putative voltage-gated sodium channel subunit alpha Nax|sodium channel protein cardiac and skeletal muscle subunit alpha|sodium channel protein type 7 subunit alpha|sodium channel protein type VII subunit alpha|sodium channel, voltage-gated, type VI, alpha polypeptide|voltage-dependent sodium channel alpha subunit 20121230 -9606 6334 SCN8A - CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4 HGNC:10596|MIM:600702|Ensembl:ENSG00000196876|HPRD:09006|Vega:OTTHUMG00000169490 12 12q13 sodium channel, voltage gated, type VIII, alpha subunit protein-coding SCN8A sodium channel, voltage gated, type VIII, alpha subunit O hNa6/Scn8a voltage-gated sodium channel|sodium channel protein type 8 subunit alpha|voltage-gated sodium channel subunit alpha Nav1.6 20121230 -9606 6335 SCN9A - ETHA|FEB3B|GEFSP7|NE-NA|NENA|Nav1.7|PN1|SFNP HGNC:10597|MIM:603415|Ensembl:ENSG00000169432|HPRD:04565|Vega:OTTHUMG00000154044 2 2q24 sodium channel, voltage-gated, type IX, alpha subunit protein-coding SCN9A sodium channel, voltage-gated, type IX, alpha subunit O hNE-Na|neuroendocrine sodium channel|peripheral sodium channel 1|sodium channel protein type 9 subunit alpha|sodium channel protein type IX subunit alpha|sodium channel, voltage-gated, type IX, alpha polypeptide|voltage-gated sodium channel alpha subunit Nav1.7|voltage-gated sodium channel subunit alpha Nav1.7 20121230 -9606 6336 SCN10A - Nav1.8|PN3|SNS|hPN3 HGNC:10582|MIM:604427|Ensembl:ENSG00000185313|HPRD:09188|Vega:OTTHUMG00000048245 3 3p22.2 sodium channel, voltage-gated, type X, alpha subunit protein-coding SCN10A sodium channel, voltage-gated, type X, alpha subunit O peripheral nerve sodium channel 3|sodium channel protein type 10 subunit alpha|sodium channel protein type X subunit alpha|sodium channel, voltage-gated, type X, alpha polypeptide|voltage-gated sodium channel subunit alpha Nav1.8 20121230 -9606 6337 SCNN1A - BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 HGNC:10599|MIM:600228|Ensembl:ENSG00000111319|HPRD:02575|Vega:OTTHUMG00000168268 12 12p13 sodium channel, non-voltage-gated 1 alpha subunit protein-coding SCNN1A sodium channel, non-voltage-gated 1 alpha subunit O alpha ENaC-2|alpha-ENaC|alpha-NaCH|amiloride-sensitive epithelial sodium channel alpha subunit|amiloride-sensitive sodium channel subunit alpha|amiloride-sensitive sodium channel subunit alpha 2|epithelial Na(+) channel subunit alpha|nasal epithelial sodium channel alpha subunit|nonvoltage-gated sodium channel 1 subunit alpha|sodium channel, nonvoltage-gated 1 alpha 20121230 -9606 6338 SCNN1B hCG_23853 BESC1|ENaCb|ENaCbeta|SCNEB HGNC:10600|MIM:600760|Ensembl:ENSG00000168447|HPRD:02861|Vega:OTTHUMG00000131608 16 16p12.2-p12.1 sodium channel, non-voltage-gated 1, beta subunit protein-coding SCNN1B sodium channel, non-voltage-gated 1, beta subunit O amiloride-sensitive sodium channel subunit beta|amiloride-sensitive sodium channel subunit beta 1|beta-ENaC|beta-NaCH|epithelial Na(+) channel subunit beta|epithelial sodium channel beta-2 subunit|epithelial sodium channel beta-3 subunit|nasal epithelial sodium channel beta subunit|nonvoltage-gated sodium channel 1 subunit beta|sodium channel, nonvoltage-gated 1, beta 20121230 -9606 6339 SCNN1D RP5-902P8.9 ENaCd|ENaCdelta|SCNED|dNaCh HGNC:10601|MIM:601328|Ensembl:ENSG00000162572|HPRD:03209|Vega:OTTHUMG00000002081 1 1p36.3-p36.2 sodium channel, non-voltage-gated 1, delta subunit protein-coding SCNN1D sodium channel, non-voltage-gated 1, delta subunit O amiloride-sensitive sodium channel subunit delta|delta-ENaC|delta-NaCH|epithelial Na(+) channel subunit delta|nonvoltage-gated sodium channel 1 subunit delta|sodium channel, nonvoltage-gated 1, delta|sodium channel, voltage-gated, type I, delta polypeptide 20121230 -9606 6340 SCNN1G - BESC3|ENaCg|ENaCgamma|PHA1|SCNEG HGNC:10602|MIM:600761|Ensembl:ENSG00000166828|HPRD:02862|Vega:OTTHUMG00000131609 16 16p12 sodium channel, non-voltage-gated 1, gamma subunit protein-coding SCNN1G sodium channel, non-voltage-gated 1, gamma subunit O ENaC gamma subunit|amiloride-sensitive epithelial sodium channel gamma subunit|amiloride-sensitive sodium channel gamma-subunit|amiloride-sensitive sodium channel subunit gamma|epithelial Na(+) channel subunit gamma|gamma-ENaC|gamma-NaCH|nonvoltage-gated sodium channel 1 subunit gamma|sodium channel, nonvoltage-gated 1, gamma 20121230 -9606 6341 SCO1 - SCOD1 HGNC:10603|MIM:603644|Ensembl:ENSG00000133028|HPRD:04705|Vega:OTTHUMG00000130364 17 17p13.1 SCO1 cytochrome c oxidase assembly protein protein-coding SCO1 SCO1 cytochrome c oxidase assembly protein O SCO cytochrome oxidase deficient homolog 1|protein SCO1 homolog, mitochondrial 20121230 -9606 6342 SCP2 - NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX HGNC:10606|MIM:184755|Ensembl:ENSG00000116171|HPRD:01700|Vega:OTTHUMG00000008936 1 1p32 sterol carrier protein 2 protein-coding SCP2 sterol carrier protein 2 O non-specific lipid-transfer protein|propanoyl-CoA C-acyltransferase|sterol carrier protein X 20121230 -9606 6343 SCT - - HGNC:10607|MIM:182099|Ensembl:ENSG00000070031|HPRD:08354|Vega:OTTHUMG00000133313 11 11p15.5 secretin protein-coding SCT secretin O - 20121230 -9606 6344 SCTR - SR HGNC:10608|MIM:182098|Ensembl:ENSG00000080293|HPRD:01628|Vega:OTTHUMG00000131407 2 2q14.1 secretin receptor protein-coding SCTR secretin receptor O pancreatic secretin receptor 20121230 -9606 6345 SRL - - HGNC:11295|MIM:604992|Ensembl:ENSG00000185739|Vega:OTTHUMG00000177617 16 16p13.3 sarcalumenin protein-coding SRL sarcalumenin O - 20121230 -9606 6346 CCL1 - I-309|P500|SCYA1|SISe|TCA3 HGNC:10609|MIM:182281|Ensembl:ENSG00000108702|HPRD:01654|Vega:OTTHUMG00000132888 17 17q12 chemokine (C-C motif) ligand 1 protein-coding CCL1 chemokine (C-C motif) ligand 1 O C-C motif chemokine 1|T lymphocyte-secreted protein I-309|inflammatory cytokine I-309|small inducible cytokine A1 (I-309, homologous to mouse Tca-3)|small-inducible cytokine A1 20121230 -9606 6347 CCL2 - GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF HGNC:10618|MIM:158105|Ensembl:ENSG00000108691|HPRD:01149|Vega:OTTHUMG00000132887 17 17q11.2-q12 chemokine (C-C motif) ligand 2 protein-coding CCL2 chemokine (C-C motif) ligand 2 O C-C motif chemokine 2|monocyte chemoattractant protein 1|monocyte chemoattractant protein-1|monocyte chemotactic and activating factor|monocyte chemotactic protein 1|monocyte secretory protein JE|small inducible cytokine A2 (monocyte chemotactic protein 1, homologous to mouse Sig-je)|small inducible cytokine subfamily A (Cys-Cys), member 2|small-inducible cytokine A2 20121230 -9606 6348 CCL3 - G0S19-1|LD78ALPHA|MIP-1-alpha|MIP1A|SCYA3 HGNC:10627|MIM:182283|Ensembl:ENSG00000006075|HPRD:01656|Vega:OTTHUMG00000133000 17 17q12 chemokine (C-C motif) ligand 3 protein-coding CCL3 chemokine (C-C motif) ligand 3 O C-C motif chemokine 3|G0/G1 switch regulatory protein 19-1|PAT 464.1|SIS-beta|macrophage inflammatory protein 1-alpha|small inducible cytokine A3 (homologous to mouse Mip-1a)|tonsillar lymphocyte LD78 alpha protein 20121230 -9606 6349 CCL3L1 - 464.2|D17S1718|G0S19-2|LD78|LD78BETA|MIP1AP|SCYA3L|SCYA3L1 HGNC:10628|MIM:601395|Ensembl:ENSG00000205021|HPRD:03234|Vega:OTTHUMG00000132996 17 17q21.1 chemokine (C-C motif) ligand 3-like 1 protein-coding CCL3L1 chemokine (C-C motif) ligand 3-like 1 O C-C motif chemokine 3-like 1|G0/G1 switch regulatory protein 19-2|LD78-beta(1-70)|PAT 464.2|small inducible cytokine A3-like 1|small-inducible cytokine A3-like 1|tonsillar lymphocyte LD78 beta protein 20121230 -9606 6351 CCL4 - ACT2|AT744.1|G-26|HC21|LAG-1|LAG1|MIP-1-beta|MIP1B|MIP1B1|SCYA2|SCYA4 HGNC:10630|MIM:182284|Ensembl:ENSG00000129277|HPRD:01657|Vega:OTTHUMG00000133004 17 17q12 chemokine (C-C motif) ligand 4 protein-coding CCL4 chemokine (C-C motif) ligand 4 O C-C motif chemokine 4|G-26 T-lymphocyte-secreted protein|MIP-1-beta(1-69)|PAT 744|SIS-gamma|T-cell activation protein 2|lymphocyte activation gene 1 protein|macrophage inflammatory protein 1-beta|secreted protein G-26|small inducible cytokine A4 (homologous to mouse Mip-1b) 20121230 -9606 6352 CCL5 - D17S136E|RANTES|SCYA5|SISd|TCP228 HGNC:10632|MIM:187011|Ensembl:ENSG00000161570|HPRD:01751|Vega:OTTHUMG00000132949 17 17q11.2-q12 chemokine (C-C motif) ligand 5 protein-coding CCL5 chemokine (C-C motif) ligand 5 O C-C motif chemokine 5|SIS-delta|T-cell specific protein p288|T-cell-specific protein RANTES|beta-chemokine RANTES|eoCP|eosinophil chemotactic cytokine|regulated upon activation, normally T-expressed, and presumably secreted|small inducible cytokine A5 (RANTES)|small inducible cytokine subfamily A (Cys-Cys), member 5|small-inducible cytokine A5|t cell-specific protein P228 20121230 -9606 6354 CCL7 - FIC|MARC|MCP-3|MCP3|NC28|SCYA6|SCYA7 HGNC:10634|MIM:158106|Ensembl:ENSG00000108688|HPRD:01150|Vega:OTTHUMG00000132889 17 17q11.2-q12 chemokine (C-C motif) ligand 7 protein-coding CCL7 chemokine (C-C motif) ligand 7 O C-C motif chemokine 7|monocyte chemoattractant protein 3|monocyte chemotactic protein 3|small inducible cytokine A7 (monocyte chemotactic protein 3)|small-inducible cytokine A7 20121230 -9606 6355 CCL8 - HC14|MCP-2|MCP2|SCYA10|SCYA8 HGNC:10635|MIM:602283|Ensembl:ENSG00000108700|HPRD:03791|Vega:OTTHUMG00000132883 17 17q11.2 chemokine (C-C motif) ligand 8 protein-coding CCL8 chemokine (C-C motif) ligand 8 O C-C motif chemokine 8|monocyte chemoattractant protein 2|monocyte chemotactic protein 2|small inducible cytokine subfamily A (Cys-Cys), member 8 (monocyte chemotactic protein 2)|small-inducible cytokine A8 20121230 -9606 6356 CCL11 - SCYA11 HGNC:10610|MIM:601156|Ensembl:ENSG00000172156|HPRD:03098|Vega:OTTHUMG00000132884 17 17q21.1-q21.2 chemokine (C-C motif) ligand 11 protein-coding CCL11 chemokine (C-C motif) ligand 11 O C-C motif chemokine 11|eosinophil chemotactic protein|eotaxin|eotaxin-1|small inducible cytokine subfamily A (Cys-Cys), member 11 (eotaxin)|small-inducible cytokine A11 20121230 -9606 6357 CCL13 - CKb10|MCP-4|NCC-1|NCC1|SCYA13|SCYL1 HGNC:10611|MIM:601391|Ensembl:ENSG00000181374|HPRD:03230|Vega:OTTHUMG00000132890 17 17q11.2 chemokine (C-C motif) ligand 13 protein-coding CCL13 chemokine (C-C motif) ligand 13 O C-C motif chemokine 13|CK-beta-10|monocyte chemoattractant protein 4|monocyte chemotactic protein 4|new CC chemokine 1|small inducible cytokine subfamily A (Cys-Cys), member 13|small-inducible cytokine A13 20121230 -9606 6358 CCL14 - CC-1|CC-3|CKB1|HCC-1|HCC-1(1-74)|HCC-1/HCC-3|HCC-3|MCIF|NCC-2|NCC2|SCYA14|SCYL2|SY14 HGNC:10612|MIM:601392|Ensembl:ENSG00000213494|HPRD:03231|Vega:OTTHUMG00000138999 17 17q11.2 chemokine (C-C motif) ligand 14 protein-coding CCL14 chemokine (C-C motif) ligand 14 O C-C motif chemokine 14|chemokine CC-1/CC-3|chemokine CC-3|hemofiltrate CC chemokine 1|new CC chemokine 2|small inducible cytokine subfamily A (Cys-Cys), member 14|small-inducible cytokine A14 20121230 -9606 6359 CCL15 - HCC-2|HMRP-2B|LKN-1|LKN1|MIP-1D|MIP-5|MRP-2B|NCC-3|NCC3|SCYA15|SCYL3|SY15 HGNC:10613|MIM:601393|Ensembl:ENSG00000267596|HPRD:03232|Vega:OTTHUMG00000133002 17 17q11.2 chemokine (C-C motif) ligand 15 protein-coding CCL15 chemokine (C-C motif) ligand 15 O C-C motif chemokine 15|MIP-1 delta|chemokine CC-2|leukotactin 1|macrophage inflammatory protein 5|new CC chemokine 3|small inducible cytokine subfamily A (Cys-Cys), member 15|small-inducible cytokine A15 20121230 -9606 6360 CCL16 - CKb12|HCC-4|ILINCK|LCC-1|LEC|LMC|Mtn-1|NCC-4|NCC4|SCYA16|SCYL4 HGNC:10614|MIM:601394|Ensembl:ENSG00000161573|HPRD:03233|Vega:OTTHUMG00000132999 17 17q11.2 chemokine (C-C motif) ligand 16 protein-coding CCL16 chemokine (C-C motif) ligand 16 O C-C motif chemokine 16|IL-10-inducible chemokine|chemokine CC-4|chemokine LEC|liver CC chemokine-1|liver-expressed chemokine|lymphocyte and monocyte chemoattractant|monotactin-1|new CC chemokine 4|small inducible cytokine subfamily A (Cys-Cys), member 16|small-inducible cytokine A16 20121230 -9606 6361 CCL17 - A-152E5.3|ABCD-2|SCYA17|TARC HGNC:10615|MIM:601520|Ensembl:ENSG00000102970|HPRD:03309|Vega:OTTHUMG00000133468 16 16q13 chemokine (C-C motif) ligand 17 protein-coding CCL17 chemokine (C-C motif) ligand 17 O C-C motif chemokine 17|CC chemokine TARC|T cell-directed CC chemokine|small inducible cytokine subfamily A (Cys-Cys), member 17|small-inducible cytokine A17|thymus and activation-regulated chemokine 20121230 -9606 6362 CCL18 - AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18 HGNC:10616|MIM:603757|Ensembl:ENSG00000006074|HPRD:04784|Vega:OTTHUMG00000133001 17 17q11.2 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) protein-coding CCL18 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) O C-C motif chemokine 18|CC chemokine PARC|CC chemokine ligand 18|alternative macrophage activation-associated CC chemokine 1|chemokine (C-C), dendritic|dendritic cell chemokine 1|macrophage inflammatory protein 4|pulmonary and activation-regulated chemokine|small inducible cytokine A18|small inducible cytokine subfamily A (Cys-Cys), member 18, pulmonary and activation-regulated|small-inducible cytokine A18 20121230 -9606 6363 CCL19 RP11-195F19.11-003 CKb11|ELC|MIP-3b|MIP3B|SCYA19 HGNC:10617|MIM:602227|Ensembl:ENSG00000172724|HPRD:03750|Vega:OTTHUMG00000019833 9 9p13 chemokine (C-C motif) ligand 19 protein-coding CCL19 chemokine (C-C motif) ligand 19 O C-C motif chemokine 19|CC chemokine ligand 19|CK beta-11|EBI1 ligand chemokine|EBI1-ligand chemokine|MIP-3-beta|beta chemokine exodus-3|beta-chemokine exodus-3|epstein-Barr virus-induced molecule 1 ligand chemokine|exodus-3|macrophage inflammatory protein 3 beta|macrophage inflammatory protein 3-beta|small inducible cytokine subfamily A (Cys-Cys), member 19|small-inducible cytokine A19 20121230 -9606 6364 CCL20 - CKb4|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 HGNC:10619|MIM:601960|Ensembl:ENSG00000115009|HPRD:03571|Vega:OTTHUMG00000133189 2 2q36.3 chemokine (C-C motif) ligand 20 protein-coding CCL20 chemokine (C-C motif) ligand 20 O C-C motif chemokine 20|CC chemokine LARC|beta chemokine exodus-1|liver and activation-regulated chemokine|macrophage inflammatory protein 3 alpha|small inducible cytokine subfamily A (Cys-Cys), member 20|small-inducible cytokine A20 20121230 -9606 6365 SCZD3 - - HGNC:10651|MIM:600511 6 6p24-p22 schizophrenia disorder 3 unknown SCZD3 schizophrenia disorder 3 O - 20120622 -9606 6366 CCL21 RP11-195F19.22-001 6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 HGNC:10620|MIM:602737|Ensembl:ENSG00000137077|HPRD:04113|Vega:OTTHUMG00000019838 9 9p13 chemokine (C-C motif) ligand 21 protein-coding CCL21 chemokine (C-C motif) ligand 21 O C-C motif chemokine 21|Efficient Chemoattractant for Lymphocytes|beta chemokine exodus-2|beta-chemokine exodus-2|exodus-2|secondary lymphoid tissue chemokine|secondary lymphoid-tissue chemokine|small inducible cytokine subfamily A (Cys-Cys), member 21|small-inducible cytokine A21 20121230 -9606 6367 CCL22 A-152E5.1 ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1 HGNC:10621|MIM:602957|Ensembl:ENSG00000102962|HPRD:04263|Vega:OTTHUMG00000133454 16 16q13 chemokine (C-C motif) ligand 22 protein-coding CCL22 chemokine (C-C motif) ligand 22 O C-C motif chemokine 22|CC chemokine STCP-1|MDC(1-69)|macrophage-derived chemokine|small inducible cytokine A22|small inducible cytokine subfamily A (Cys-Cys), member 22|small-inducible cytokine A22|stimulated T cell chemotactic protein 1|stimulated T-cell chemotactic protein 1 20121230 -9606 6368 CCL23 - CK-BETA-8|CKb8|Ckb-8|Ckb-8-1|MIP-3|MIP3|MPIF-1|SCYA23 HGNC:10622|MIM:602494|Ensembl:ENSG00000167236|HPRD:03930|Vega:OTTHUMG00000132997 17 17q12 chemokine (C-C motif) ligand 23 protein-coding CCL23 chemokine (C-C motif) ligand 23 O C-C motif chemokine 23|C6 beta-chemokine|hmrp-2a|macrophage inflammatory protein 3|myeloid progenitor inhibitory factor 1|small inducible cytokine subfamily A (Cys-Cys), member 23|small-inducible cytokine A23 20121230 -9606 6369 CCL24 - Ckb-6|MPIF-2|MPIF2|SCYA24 HGNC:10623|MIM:602495|Ensembl:ENSG00000106178|HPRD:03931|Vega:OTTHUMG00000156635 7 7q11.23 chemokine (C-C motif) ligand 24 protein-coding CCL24 chemokine (C-C motif) ligand 24 O C-C motif chemokine 24|CK-beta-6|eosinophil chemotactic protein 2|eotaxin-2|myeloid progenitor inhibitory factor 2|small inducible cytokine subfamily A (Cys-Cys), member 24|small-inducible cytokine A24 20121230 -9606 6370 CCL25 - Ckb15|SCYA25|TECK HGNC:10624|MIM:602565|Ensembl:ENSG00000131142|HPRD:03976|Vega:OTTHUMG00000141287 19 19p13.2 chemokine (C-C motif) ligand 25 protein-coding CCL25 chemokine (C-C motif) ligand 25 O C-C motif chemokine 25|Ck beta-15|TECKvar|chemokine TECK|small inducible cytokine subfamily A (Cys-Cys), member 25|small-inducible cytokine A25|thymus expressed chemokine|thymus-expressed chemokine 20121230 -9606 6372 CXCL6 - CKA-3|GCP-2|GCP2|SCYB6 HGNC:10643|MIM:138965|Ensembl:ENSG00000124875|HPRD:00735|Vega:OTTHUMG00000130010 4 4q13.3 chemokine (C-X-C motif) ligand 6 protein-coding CXCL6 chemokine (C-X-C motif) ligand 6 O C-X-C motif chemokine 6|Small inducible cytokine subfamily B (Cys-X-Cys), member b|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)|chemokine alpha 3|granulocyte chemotactic protein 2|small inducible cytokine subfamily B (Cys-X-Cys), member 6 (granulocyte chemotactic protein 2)|small-inducible cytokine B6 20121230 -9606 6373 CXCL11 - H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 HGNC:10638|MIM:604852|Ensembl:ENSG00000169248|HPRD:05329|Vega:OTTHUMG00000130101 4 4q21.2 chemokine (C-X-C motif) ligand 11 protein-coding CXCL11 chemokine (C-X-C motif) ligand 11 O C-X-C motif chemokine 11|beta-R1|interferon gamma-inducible protein 9|interferon-inducible T-cell alpha chemoattractant|small inducible cytokine B11|small inducible cytokine subfamily B (Cys-X-Cys), member 11|small inducible cytokine subfamily B (Cys-X-Cys), member 9B|small-inducible cytokine B11 20121230 -9606 6374 CXCL5 - ENA-78|SCYB5 HGNC:10642|MIM:600324|Ensembl:ENSG00000163735|HPRD:08976|Vega:OTTHUMG00000160871 4 4q13.3 chemokine (C-X-C motif) ligand 5 protein-coding CXCL5 chemokine (C-X-C motif) ligand 5 O C-X-C motif chemokine 5|ENA-78(1-78)|epithelial-derived neutrophil activating protein 78|epithelial-derived neutrophil-activating peptide 78|epithelial-derived neutrophil-activating protein 78|neutrophil-activating peptide ENA-78|neutrophil-activating protein 78|small inducible cytokine B5|small inducible cytokine subfamily B (Cys-X-Cys), member 5 (epithelial-derived neutrophil-activating peptide 78)|small-inducible cytokine B5 20121230 -9606 6375 XCL1 - ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 HGNC:10645|MIM:600250|Ensembl:ENSG00000143184|HPRD:02595|Vega:OTTHUMG00000034548 1 1q23 chemokine (C motif) ligand 1 protein-coding XCL1 chemokine (C motif) ligand 1 O SCM-1-alpha|XC chemokine ligand 1|c motif chemokine 1|cytokine SCM-1|lymphotactin|lymphotaxin|single cysteine motif 1a|small inducible cytokine subfamily C, member 1 (lymphotactin)|small-inducible cytokine C1 20121230 -9606 6376 CX3CL1 A-152E5.2 ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin HGNC:10647|MIM:601880|Ensembl:ENSG00000006210|HPRD:03529|Vega:OTTHUMG00000133469 16 16q13 chemokine (C-X3-C motif) ligand 1 protein-coding CX3CL1 chemokine (C-X3-C motif) ligand 1 O C-X3-C motif chemokine 1|CX3C membrane-anchored chemokine|fractalkine|small inducible cytokine subfamily D (Cys-X3-Cys), member 1 (fractalkine, neurotactin)|small inducible cytokine subfamily D (Cys-X3-Cys), member-1|small-inducible cytokine D1 20121230 -9606 6377 SCZD1 - - HGNC:10649|MIM:181510 5 5q11.2-q13.3 schizophrenia disorder 1 unknown SCZD1 schizophrenia disorder 1 O - 20120622 -9606 6378 SCZD2 - - HGNC:10650|MIM:603342 11 11q14-q21 schizophrenia disorder 2 unknown SCZD2 schizophrenia disorder 2 O - 20120622 -9606 6382 SDC1 - CD138|SDC|SYND1|syndecan HGNC:10658|MIM:186355|Ensembl:ENSG00000115884|HPRD:01718|Vega:OTTHUMG00000090751 2 2p24.1 syndecan 1 protein-coding SDC1 syndecan 1 O CD138 antigen|heparan sulfate proteoglycan fibroblast growth factor receptor|syndecan proteoglycan 1|syndecan-1 20121230 -9606 6383 SDC2 - CD362|HSPG|HSPG1|SYND2 HGNC:10659|MIM:142460|Ensembl:ENSG00000169439|HPRD:00803|Vega:OTTHUMG00000164689 8 8q22-q23 syndecan 2 protein-coding SDC2 syndecan 2 O cell surface-associated heparan sulfate proteoglycan 1|fibroglycan|heparan sulfate proteoglycan 1, cell surface-associated|heparan sulfate proteoglycan core protein|syndecan proteoglycan 2|syndecan-2 20121230 -9606 6385 SDC4 - SYND4 HGNC:10661|MIM:600017|Ensembl:ENSG00000124145|HPRD:08366|Vega:OTTHUMG00000033083 20 20q12 syndecan 4 protein-coding SDC4 syndecan 4 O amphiglycan|ryudocan amphiglycan|ryudocan core protein|syndecan 4 (amphiglycan, ryudocan)|syndecan proteoglycan 4|syndecan-4 20121230 -9606 6386 SDCBP - MDA-9|ST1|SYCL|TACIP18 HGNC:10662|MIM:602217|Ensembl:ENSG00000137575|HPRD:03741|Vega:OTTHUMG00000164303 8 8q12 syndecan binding protein (syntenin) protein-coding SDCBP syndecan binding protein (syntenin) O melanoma differentiation associated protein-9|melanoma differentiation-associated protein 9|pro-TGF-alpha cytoplasmic domain-interacting protein 18|scaffold protein Pbp1|syndecan-binding protein 1|syntenin-1 20121230 -9606 6387 CXCL12 - IRH|PBSF|SCYB12|SDF1|SDF1A|SDF1B|TLSF|TPAR1 HGNC:10672|MIM:600835|Ensembl:ENSG00000107562|HPRD:02904|Vega:OTTHUMG00000018054 10 10q11.1 chemokine (C-X-C motif) ligand 12 protein-coding CXCL12 chemokine (C-X-C motif) ligand 12 O intercrine reduced in hepatomas|pre-B cell growth-stimulating factor|stromal cell-derived factor 1 20121230 -9606 6388 SDF2 - - HGNC:10675|MIM:602934|Ensembl:ENSG00000132581|HPRD:04243|Vega:OTTHUMG00000132681 17 17q11.2 stromal cell-derived factor 2 protein-coding SDF2 stromal cell-derived factor 2 O SDF-2 20121230 -9606 6389 SDHA - CMD1GG|FP|PGL5|SDH1|SDH2|SDHF HGNC:10680|MIM:600857|Ensembl:ENSG00000073578|HPRD:02914|Vega:OTTHUMG00000090275 5 5p15 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) protein-coding SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) O flavoprotein subunit of complex II|succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial|succinate dehydrogenase complex flavoprotein subunit 20121230 -9606 6390 SDHB - IP|PGL4|SDH|SDH1|SDH2|SDHIP HGNC:10681|MIM:185470|Ensembl:ENSG00000117118|HPRD:01707|Vega:OTTHUMG00000002289 1 1p36.1-p35 succinate dehydrogenase complex, subunit B, iron sulfur (Ip) protein-coding SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) O iron-sulfur subunit of complex II|succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 20121230 -9606 6391 SDHC - CYB560|CYBL|PGL3|QPS1|SDH3 HGNC:10682|MIM:602413|Ensembl:ENSG00000143252|HPRD:03878|Vega:OTTHUMG00000034468 1 1q23.3 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa protein-coding SDHC succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa O QPs-1|cytochrome B large subunit of complex II|integral membrane protein CII-3|integral membrane protein CII-3b|succinate dehydrogenase cytochrome b560 subunit, mitochondrial|succinate-ubiquinone oxidoreductase cytochrome B large subunit 20121230 -9606 6392 SDHD - CBT1|PGL|PGL1|SDH4 HGNC:10683|MIM:602690|Ensembl:ENSG00000204370|HPRD:04069|Vega:OTTHUMG00000166997 11 11q23 succinate dehydrogenase complex, subunit D, integral membrane protein protein-coding SDHD succinate dehydrogenase complex, subunit D, integral membrane protein O CII-4|QPs3|cybS|succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial|succinate-ubiquinone oxidoreductase cytochrome b small subunit|succinate-ubiquinone reductase membrane anchor subunit 20121230 -9606 6393 SDU - - HGNC:10692 - - skeletal dysplasia (unspecified) unknown SDU skeletal dysplasia (unspecified) O - 20110215 -9606 6395 SEA - - HGNC:10695|MIM:165110 11 11q13 S13 erythroblastosis oncogene homolog (avian) protein-coding SEA S13 erythroblastosis oncogene homolog (avian) O Oncogene SEA (S13 avian erythroblastosis)|S13 avian erythroblastosis oncogene homolog 20080828 -9606 6396 SEC13 - D3S1231E|SEC13L1|SEC13R|npp-20 HGNC:10697|MIM:600152|Ensembl:ENSG00000157020|HPRD:02538|Vega:OTTHUMG00000128671 3 3p25-p24 SEC13 homolog (S. cerevisiae) protein-coding SEC13 SEC13 homolog (S. cerevisiae) O SEC13-like 1 isoform|SEC13-like protein 1|SEC13-related protein|protein SEC13 homolog 20121230 -9606 6397 SEC14L1 - PRELID4A|SEC14L HGNC:10698|MIM:601504|Ensembl:ENSG00000129657|HPRD:03295|Vega:OTTHUMG00000177311 17 17q25.2 SEC14-like 1 (S. cerevisiae) protein-coding SEC14L1 SEC14-like 1 (S. cerevisiae) O SEC14-like protein 1 20121230 -9606 6398 SECTM1 - K12 HGNC:10707|MIM:602602|Ensembl:ENSG00000141574|HPRD:04004|Vega:OTTHUMG00000178668 17 17q25 secreted and transmembrane 1 protein-coding SECTM1 secreted and transmembrane 1 O secreted and transmembrane protein 1|type 1a transmembrane protein 20121230 -9606 6399 TRAPPC2 - MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334 HGNC:23068|MIM:300202|Ensembl:ENSG00000196459|HPRD:02189|Vega:OTTHUMG00000021157 X Xp22 trafficking protein particle complex 2 protein-coding TRAPPC2 trafficking protein particle complex 2 O sedlin|trafficking protein particle complex subunit 2 20121230 -9606 6400 SEL1L UNQ128/PRO1063 PRO1063|SEL1-LIKE|SEL1L1 HGNC:10717|MIM:602329|Ensembl:ENSG00000071537|HPRD:07532|Vega:OTTHUMG00000171419 14 14q31 sel-1 suppressor of lin-12-like (C. elegans) protein-coding SEL1L sel-1 suppressor of lin-12-like (C. elegans) O Suppressor of lin 12 (sel-1), C. elegans, homolog of|protein sel-1 homolog 1|sel-1 suppressor of lin-12-like 1|suppressor of lin-12-like protein 1 20121230 -9606 6401 SELE RP1-117P20.2 CD62E|ELAM|ELAM1|ESEL|LECAM2 HGNC:10718|MIM:131210|Ensembl:ENSG00000007908|HPRD:00566|Vega:OTTHUMG00000034851 1 1q22-q25 selectin E protein-coding SELE selectin E O CD62 antigen-like family member E|E-selectin|ELAM-1|endothelial adhesion molecule 1|endothelial leukocyte adhesion molecule 1|leukocyte endothelial cell adhesion molecule 2|leukocyte-endothelial cell adhesion molecule 2 20121230 -9606 6402 SELL RP1-117P20.1 CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 HGNC:10720|MIM:153240|Ensembl:ENSG00000188404|Vega:OTTHUMG00000034809 1 1q23-q25 selectin L protein-coding SELL selectin L O CD62 antigen-like family member L|L-selectin|gp90-MEL|leukocyte surface antigen Leu-8|leukocyte-endothelial cell adhesion molecule 1|lymph node homing receptor|lymphocyte adhesion molecule 1|pln homing receptor 20121230 -9606 6403 SELP RP1-86F14.2 CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL HGNC:10721|MIM:173610|Ensembl:ENSG00000174175|HPRD:01433|Vega:OTTHUMG00000034685 1 1q22-q25 selectin P (granule membrane protein 140kDa, antigen CD62) protein-coding SELP selectin P (granule membrane protein 140kDa, antigen CD62) O CD62 antigen-like family member P|GMP-140|P-selectin|granule membrane protein 140|granulocyte membrane protein|leukocyte-endothelial cell adhesion molecule 3|platelet activation dependent granule-external membrane protein|platelet alpha-granule membrane protein 20121230 -9606 6404 SELPLG - CD162|CLA|PSGL-1|PSGL1 HGNC:10722|MIM:600738|Ensembl:ENSG00000110876|HPRD:02845|Vega:OTTHUMG00000169411 12 12q24 selectin P ligand protein-coding SELPLG selectin P ligand O P-selectin glycoprotein ligand 1|cutaneous lymphocyte-associated associated antigen 20121230 -9606 6405 SEMA3F - SEMA-IV|SEMA4|SEMAK HGNC:10728|MIM:601124|Ensembl:ENSG00000001617|HPRD:03079|Vega:OTTHUMG00000156806 3 3p21.3 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F protein-coding SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F O sema III/F|sema IV|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, 3F|semaphorin III/F|semaphorin IV|semaphorin-3F 20121230 -9606 6406 SEMG1 - CT103|SEMG|SGI|dJ172H20.2 HGNC:10742|MIM:182140|Ensembl:ENSG00000124233|HPRD:01641|Vega:OTTHUMG00000032565 20 20q12-q13.2 semenogelin I protein-coding SEMG1 semenogelin I O cancer/testis antigen 103|semen coagulating protein|semenogelin-1 20121230 -9606 6407 SEMG2 - SGII HGNC:10743|MIM:182141|Ensembl:ENSG00000124157|HPRD:01642|Vega:OTTHUMG00000032566 20 20q12-q13.1 semenogelin II protein-coding SEMG2 semenogelin II O Semenogelin 2|semenogelin-2 20121230 -9606 6409 SEN2 - - HGNC:10745 1 1q42-q44 senescence (cellular)-related 2 unknown SEN2 senescence (cellular)-related 2 O - 20110215 -9606 6410 SEN3 - - HGNC:10746 X - senescence (cellular)-related 3 unknown SEN3 senescence (cellular)-related 3 O - 20110215 -9606 6411 SEN6 - - HGNC:10747 6 6q26-q27 senescence (cellular)-related 6 unknown SEN6 senescence (cellular)-related 6 O - 20110215 -9606 6412 SEN6A - - HGNC:10748 6 6q14-q21 senescence (cellular)-related 6A unknown SEN6A senescence (cellular)-related 6A O - 20120205 -9606 6413 SEN6B - - HGNC:10749 6 6q21-q22 senescence (cellular)-related 6B unknown SEN6B senescence (cellular)-related 6B O - 20110215 -9606 6414 SEPP1 - SELP|SeP HGNC:10751|MIM:601484|Ensembl:ENSG00000250722|HPRD:03286|Vega:OTTHUMG00000162140 5 5q31 selenoprotein P, plasma, 1 protein-coding SEPP1 selenoprotein P, plasma, 1 O selenoprotein P 20121230 -9606 6415 SEPW1 - selW HGNC:10752|MIM:603235|Ensembl:ENSG00000178980|HPRD:08377 19 19q13.3 selenoprotein W, 1 protein-coding SEPW1 selenoprotein W, 1 O selenoprotein W 20121230 -9606 6416 MAP2K4 - JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1 HGNC:6844|MIM:601335|Ensembl:ENSG00000065559|HPRD:03213|Vega:OTTHUMG00000178267 17 17p12 mitogen-activated protein kinase kinase 4 protein-coding MAP2K4 mitogen-activated protein kinase kinase 4 O JNK activating kinase 1|JNK-activated kinase 1|JNK-activating kinase 1|MAP kinase kinase 4|MAPK/ERK kinase 4|MAPKK 4|MEK 4|SAPK kinase 1|SAPK/ERK kinase 1|c-Jun N-terminal kinase kinase 1|dual specificity mitogen-activated protein kinase kinase 4|stress-activated protein kinase kinase 1 20121230 -9606 6418 SET RP11-216B9.3 2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA HGNC:10760|MIM:600960|Ensembl:ENSG00000119335|HPRD:09023|Vega:OTTHUMG00000020755 9 9q34 SET nuclear oncogene protein-coding SET SET nuclear oncogene O HLA-DR-associated protein II|SET translocation (myeloid leukemia-associated)|Template-Activating Factor-I, chromatin remodelling factor|inhibitor of granzyme A-activated DNase|inhibitor-2 of protein phosphatase-2A|phosphatase 2A inhibitor I2PP2A|protein SET|protein phosphatase type 2A inhibitor 20121230 -9606 6419 SETMAR - METNASE HGNC:10762|MIM:609834|Ensembl:ENSG00000170364|HPRD:10225|Vega:OTTHUMG00000090265 3 3p26.1 SET domain and mariner transposase fusion gene protein-coding SETMAR SET domain and mariner transposase fusion gene O SET domain and mariner transposase fusion gene-containing protein|histone-lysine N-methyltransferase SETMAR|hsMar1 20121230 -9606 6420 SF - - MIM:111800 4 4q28-q31 Stoltzfus blood group unknown - - - - 20120622 -9606 6421 SFPQ - POMP100|PSF HGNC:10774|MIM:605199|Ensembl:ENSG00000116560|HPRD:07284|Vega:OTTHUMG00000004157 1 1p34.3 splicing factor proline/glutamine-rich protein-coding SFPQ splicing factor proline/glutamine-rich O 100 kDa DNA-pairing protein|DNA-binding p52/p100 complex, 100 kDa subunit|PTB-associated splicing factor|PTB-associated-splicing factor|hPOMp100|polypyrimidine tract binding protein associated|polypyrimidine tract-binding protein-associated splicing factor|polypyrimidine tract-binding protein-associated-splicing factor|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)|splicing factor proline/glutamine rich (polypyrimidine tract-binding protein-associated)|splicing factor, proline- and glutamine-rich 20121230 -9606 6422 SFRP1 - FRP|FRP-1|FRP1|FrzA|SARP2 HGNC:10776|MIM:604156|Ensembl:ENSG00000104332|HPRD:09165|Vega:OTTHUMG00000164074 8 8p11.21 secreted frizzled-related protein 1 protein-coding SFRP1 secreted frizzled-related protein 1 O SARP-2|sFRP-1|secreted apoptosis-related protein 2 20121230 -9606 6423 SFRP2 FKSG12 FRP-2|SARP1|SDF-5 HGNC:10777|MIM:604157|Ensembl:ENSG00000145423|HPRD:16041|Vega:OTTHUMG00000161559 4 4q31.3 secreted frizzled-related protein 2 protein-coding SFRP2 secreted frizzled-related protein 2 O SARP-1|sFRP-2|secreted apoptosis related protein 1|secreted apoptosis-related protein 1 20121230 -9606 6424 SFRP4 - FRP-4|FRPHE|sFRP-4 HGNC:10778|MIM:606570|Ensembl:ENSG00000106483|HPRD:07357|Vega:OTTHUMG00000023026 7 7p14.1 secreted frizzled-related protein 4 protein-coding SFRP4 secreted frizzled-related protein 4 O frizzled protein, human endometrium|secreted frizzled-related protein 4; secreted frizzled-related protein 4 20121230 -9606 6425 SFRP5 - SARP3 HGNC:10779|MIM:604158|Ensembl:ENSG00000120057|HPRD:09166|Vega:OTTHUMG00000018866 10 10q24.1 secreted frizzled-related protein 5 protein-coding SFRP5 secreted frizzled-related protein 5 O FRP-1b|SARP-3|frizzled-related protein 1b|sFRP-5|secreted apoptosis related protein 3|secreted apoptosis-related protein 3 20121230 -9606 6426 SRSF1 OK/SW-cl.3 ASF|SF2|SF2p33|SFRS1|SRp30a HGNC:10780|MIM:600812|Ensembl:ENSG00000136450|HPRD:02887|Vega:OTTHUMG00000178781 17 17q22 serine/arginine-rich splicing factor 1 protein-coding SRSF1 serine/arginine-rich splicing factor 1 O ASF-1|SR splicing factor 1|alternative-splicing factor 1|pre-mRNA-splicing factor SF2, P33 subunit|splicing factor 2|splicing factor, arginine/serine-rich 1 20121230 -9606 6427 SRSF2 - PR264|SC-35|SC35|SFRS2|SFRS2A|SRp30b HGNC:10783|MIM:600813|Ensembl:ENSG00000161547|HPRD:02888|Vega:OTTHUMG00000177547 17 17q25.1 serine/arginine-rich splicing factor 2 protein-coding SRSF2 serine/arginine-rich splicing factor 2 O SR splicing factor 2|splicing component, 35 kDa|splicing factor SC35|splicing factor, arginine/serine-rich 2 20121230 -9606 6428 SRSF3 - SFRS3|SRp20 HGNC:10785|MIM:603364|Ensembl:ENSG00000112081|HPRD:04530|Vega:OTTHUMG00000014599 6 6p21 serine/arginine-rich splicing factor 3 protein-coding SRSF3 serine/arginine-rich splicing factor 3 O pre-mRNA-splicing factor SRP20|splicing factor, arginine/serine-rich 3|splicing factor, arginine/serine-rich, 20-kD 20121230 -9606 6429 SRSF4 - SFRS4|SRP75 HGNC:10786|MIM:601940|Ensembl:ENSG00000116350|HPRD:09052|Vega:OTTHUMG00000003663 1 1p35.3 serine/arginine-rich splicing factor 4 protein-coding SRSF4 serine/arginine-rich splicing factor 4 O SR splicing factor 4|SRP001LB|pre-mRNA-splicing factor SRP75|splicing factor, arginine/serine-rich 4 20121230 -9606 6430 SRSF5 - HRS|SFRS5|SRP40 HGNC:10787|MIM:600914|Ensembl:ENSG00000100650|Vega:OTTHUMG00000171235 14 14q24 serine/arginine-rich splicing factor 5 protein-coding SRSF5 serine/arginine-rich splicing factor 5 O SR splicing factor 5|delayed-early protein HRS|pre-mRNA-splicing factor SRP40|splicing factor, arginine/serine-rich 5 20121230 -9606 6431 SRSF6 - B52|SFRS6|SRP55 HGNC:10788|MIM:601944|Ensembl:ENSG00000124193|HPRD:09054|Vega:OTTHUMG00000032502 20 20q12-q13.1 serine/arginine-rich splicing factor 6 protein-coding SRSF6 serine/arginine-rich splicing factor 6 O SR splicing factor 6|pre-mRNA-splicing factor SRP55|splicing factor, arginine/serine-rich, 55 kDa 20121230 -9606 6432 SRSF7 - 9G8|AAG3|SFRS7 HGNC:10789|MIM:600572|Ensembl:ENSG00000115875|HPRD:08991|Vega:OTTHUMG00000102076 2 2p22.1 serine/arginine-rich splicing factor 7 protein-coding SRSF7 serine/arginine-rich splicing factor 7 O SR splicing factor 7|aging-associated protein 3|splicing factor 9G8|splicing factor, arginine/serine-rich 7, 35kDa 20121230 -9606 6433 SFSWAP - SFRS8|SWAP HGNC:10790|MIM:601945|Ensembl:ENSG00000061936|HPRD:09055|Vega:OTTHUMG00000168319 12 12q24.33 splicing factor, suppressor of white-apricot homolog (Drosophila) protein-coding SFSWAP splicing factor, suppressor of white-apricot homolog (Drosophila) O splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)|splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot, Drosophila homolog)|splicing factor, suppressor of white-apricot homolog|suppressor of white apricot protein homolog 20121230 -9606 6434 TRA2B - Htra2-beta|SFRS10|SRFS10|TRA2-BETA|TRAN2B HGNC:10781|MIM:602719|Ensembl:ENSG00000136527|HPRD:04097|Vega:OTTHUMG00000156641 3 3q26.2-q27 transformer 2 beta homolog (Drosophila) protein-coding TRA2B transformer 2 beta homolog (Drosophila) O TRA-2 beta|splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)|transformer-2 protein homolog B|transformer-2 protein homolog beta 20121230 -9606 6439 SFTPB - PSP-B|SFTB3|SFTP3|SMDP1|SP-B HGNC:10801|MIM:178640|Ensembl:ENSG00000168878|HPRD:01523|Vega:OTTHUMG00000130181 2 2p12-p11.2 surfactant protein B protein-coding SFTPB surfactant protein B O 18 kDa pulmonary-surfactant protein|6 kDa protein|pulmonary surfactant-associated protein B|pulmonary surfactant-associated proteolipid SPL(Phe) 20121230 -9606 6440 SFTPC - BRICD6|PSP-C|SFTP2|SMDP2|SP-C HGNC:10802|MIM:178620|Ensembl:ENSG00000168484|HPRD:01520|Vega:OTTHUMG00000163775 8 8p21 surfactant protein C protein-coding SFTPC surfactant protein C O BRICHOS domain containing 6|SP5|pulmonary surfactant apoprotein-2 SP-C|pulmonary surfactant-associated protein C|pulmonary surfactant-associated proteolipid SPL(Val) 20121230 -9606 6441 SFTPD - COLEC7|PSP-D|SFTP4|SP-D HGNC:10803|MIM:178635|Ensembl:ENSG00000133661|HPRD:01522|Vega:OTTHUMG00000018590 10 10q22.2-q23.1 surfactant protein D protein-coding SFTPD surfactant protein D O collectin 7|collectin-7|lung surfactant protein D|pulmonary surfactant apoprotein|pulmonary surfactant-associated protein D|surfactant, pulmonary-associated protein D|surfactant-associated protein, pulmonary 4 20121230 -9606 6442 SGCA - 50-DAG|A2|ADL|DAG2|DMDA2|LGMD2D|SCARMD1|adhalin HGNC:10805|MIM:600119|Ensembl:ENSG00000108823|HPRD:02525|Vega:OTTHUMG00000162024 17 17q21 sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) protein-coding SGCA sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) O 50 kDa dystrophin-associated glycoprotein|50DAG|50kD DAG|alpha-SG|alpha-sarcoglycan|dystroglycan-2 20121230 -9606 6443 SGCB - A3b|LGMD2E|SGC HGNC:10806|MIM:600900|Ensembl:ENSG00000163069|HPRD:02942|Vega:OTTHUMG00000128697 4 4q12 sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) protein-coding SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) O 43 kDa dystrophin-associated glycoprotein|43DAG|beta-SG|beta-sarcoglycan|beta-sarcoglycan(43kD dystrophin-associated glycoprotein)|limb girdle muscular dystrophy 2E (non-linked families) 20121230 -9606 6444 SGCD - 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD HGNC:10807|MIM:601411|Ensembl:ENSG00000170624|HPRD:03246|Vega:OTTHUMG00000163445 5 5q33-q34 sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) O 35 kDa dystrophin-associated glycoprotein|delta-SG|delta-sarcoglycan|dystrophin associated glycoprotein, delta sarcoglycan|placental delta sarcoglycan 20121230 -9606 6445 SGCG RP11-40O20.1 A4|DAGA4|DMDA|DMDA1|LGMD2C|MAM|SCARMD2|SCG3|TYPE HGNC:10809|MIM:608896|Ensembl:ENSG00000102683|HPRD:07039|Vega:OTTHUMG00000016563 13 13q12 sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) protein-coding SGCG sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) O 35 kDa dystrophin-associated glycoprotein|35DAG|35kD dystrophin-associated glycoprotein|gamma sarcoglycan|gamma-SG|gamma-sarcoglycan 20121230 -9606 6446 SGK1 RP1-188K17.1 SGK HGNC:10810|MIM:602958|Ensembl:ENSG00000118515|HPRD:04264|Vega:OTTHUMG00000015613 6 6q23 serum/glucocorticoid regulated kinase 1 protein-coding SGK1 serum/glucocorticoid regulated kinase 1 O Sgk1 variant i3|serine/threonine protein kinase SGK|serine/threonine-protein kinase Sgk1|serum/glucocorticoid-regulated kinase 1 20121230 -9606 6447 SCG5 - 7B2|P7B2|SGNE1|SgV HGNC:10816|MIM:173120|Ensembl:ENSG00000166922|HPRD:01410|Vega:OTTHUMG00000159447 15 15q13-q14 secretogranin V (7B2 protein) protein-coding SCG5 secretogranin V (7B2 protein) O neuroendocrine protein 7B2|pituitary polypeptide|prohormone convertase chaperone|secretogranin-5|secretory granule endocrine protein I|secretory granule, neuroendocrine protein 1 (7B2 protein) 20121230 -9606 6448 SGSH - HSS|MPS3A|SFMD HGNC:10818|MIM:605270|Ensembl:ENSG00000181523|HPRD:05590|Vega:OTTHUMG00000177569 17 17q25.3 N-sulfoglucosamine sulfohydrolase protein-coding SGSH N-sulfoglucosamine sulfohydrolase O N-sulphoglucosamine sulphohydrolase|heparan sulfate sulfatase|mucopolysaccharidosis type IIIA|sulfoglucosamine sulfamidase|sulphamidase 20121230 -9606 6449 SGTA - SGT|alphaSGT|hSGT HGNC:10819|MIM:603419|Ensembl:ENSG00000104969|HPRD:04568|Vega:OTTHUMG00000180474 19 19p13 small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha protein-coding SGTA small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha O UBP|alpha-SGT|protein containing three tetratricopeptide repeats|small glutamine-rich tetratricopeptide repeat-containing protein alpha|vpu-binding protein 20121230 -9606 6450 SH3BGR - 21-GARP HGNC:10822|MIM:602230|Ensembl:ENSG00000185437|HPRD:03753|Vega:OTTHUMG00000074113 21 21q22.3 SH3 domain binding glutamic acid-rich protein protein-coding SH3BGR SH3 domain binding glutamic acid-rich protein O 21-glutamic acid-rich protein|SH3 domain-binding glutamic acid-rich protein|SH3-binding domain and glutamic acid-rich protein 20121230 -9606 6451 SH3BGRL - SH3BGR HGNC:10823|MIM:300190|Ensembl:ENSG00000131171|HPRD:02178|Vega:OTTHUMG00000021910 X Xq13.3 SH3 domain binding glutamic acid-rich protein like protein-coding SH3BGRL SH3 domain binding glutamic acid-rich protein like O SH3 domain-binding glutamic acid-rich-like protein|SH3-binding domain glutamic acid-rich protein like 20121230 -9606 6452 SH3BP2 RES4-23 3BP-2|3BP2|CRBM|CRPM HGNC:10825|MIM:602104|Ensembl:ENSG00000087266|HPRD:03657|Vega:OTTHUMG00000160801 4 4p16.3 SH3-domain binding protein 2 protein-coding SH3BP2 SH3-domain binding protein 2 O Abl-SH3 binding protein 2|SH3 domain-binding protein 2|TNFAIP3 interacting protein 2 20121230 -9606 6453 ITSN1 - ITSN|SH3D1A|SH3P17 HGNC:6183|MIM:602442|Ensembl:ENSG00000205726|HPRD:03898|Vega:OTTHUMG00000065284 21 21q22.1-q22.2 intersectin 1 (SH3 domain protein) protein-coding ITSN1 intersectin 1 (SH3 domain protein) O SH3 domain-containing protein 1A|Src homology 3 domain-containing protein|human intersectin-SH3 domain-containing protein SH3P17|intersectin 1 short form variant 3|intersectin 1 short form variant, 11|intersectin short variant 12|intersectin-1 20121230 -9606 6455 SH3GL1 - CNSA1|EEN|SH3D2B|SH3P8 HGNC:10830|MIM:601768|Ensembl:ENSG00000141985|HPRD:03462 19 19p13.3 SH3-domain GRB2-like 1 protein-coding SH3GL1 SH3-domain GRB2-like 1 O EEN fusion partner of MLL|SH3 domain protein 2B|SH3 domain-containing GRB2-like protein 1|SH3-containing Grb-2-like 1 protein|endophilin-2|endophilin-A2|extra 11-19 leukemia fusion|extra eleven-nineteen leukemia fusion gene protein 20121230 -9606 6456 SH3GL2 - CNSA2|EEN-B1|SH3D2A|SH3P4 HGNC:10831|MIM:604465|Ensembl:ENSG00000107295|HPRD:05125|Vega:OTTHUMG00000019601 9 9p22 SH3-domain GRB2-like 2 protein-coding SH3GL2 SH3-domain GRB2-like 2 O Endophilin A1 BAR domain|SH3 domain protein 2A|SH3 domain-containing GRB2-like protein 2|bA335L15.1 (SH3-domain GRB2-like 2)|endophilin-1|endophilin-A1 20121230 -9606 6457 SH3GL3 - CNSA3|EEN-2B-L3|EEN-B2|HsT19371|SH3D2C|SH3P13 HGNC:10832|MIM:603362|Ensembl:ENSG00000140600|HPRD:04528|Vega:OTTHUMG00000147361 15 15q24 SH3-domain GRB2-like 3 protein-coding SH3GL3 SH3-domain GRB2-like 3 O SH3 domain protein 2C|SH3 domain-containing GRB2-like protein 3|endophilin-3|endophilin-A3 20121230 -9606 6458 SH3GL1P1 - CNSA-P1|SH3GLP1 HGNC:10835 17 17q11.2 SH3-domain GRB2-like 1 pseudogene 1 pseudo SH3GL1P1 SH3-domain GRB2-like 1 pseudogene 1 O - 20121230 -9606 6459 SH3GL1P2 - CNSA-P2|SH3GLP2 HGNC:10836 17 17q11.2 SH3-domain GRB2-like 1 pseudogene 2 pseudo SH3GL1P2 SH3-domain GRB2-like 1 pseudogene 2 O - 20121230 -9606 6461 SHB RP11-3J10.3 RP11-3J10.8|bA3J10.2 HGNC:10838|MIM:600314|Ensembl:ENSG00000107338|HPRD:02635|Vega:OTTHUMG00000019936 9 9p13.2 Src homology 2 domain containing adaptor protein B protein-coding SHB Src homology 2 domain containing adaptor protein B O SH2 domain-containing adapter protein B|SHB (Src homology 2 domain containing) adaptor protein B|SHB adaptor protein (a Src homology 2 protein) 20121230 -9606 6462 SHBG - ABP|SBP|TEBG HGNC:10839|MIM:182205|Ensembl:ENSG00000129214|HPRD:01646|Vega:OTTHUMG00000108153 17 17p13-p12 sex hormone-binding globulin protein-coding SHBG sex hormone-binding globulin O sex steroid-binding protein|testis-specific androgen-binding protein|testosterone-binding beta-globulin|testosterone-estradiol-binding globulin|testosterone-estrogen-binding globulin 20121230 -9606 6463 SHFM2 - SHFD2|SHSF2 HGNC:10846|MIM:313350 X Xq26 split hand/foot malformation (ectrodactyly) type 2 unknown SHFM2 split hand/foot malformation (ectrodactyly) type 2 O - 20120622 -9606 6464 SHC1 RP11-307C12.1 SHC|SHCA HGNC:10840|MIM:600560|Ensembl:ENSG00000160691|HPRD:02780|Vega:OTTHUMG00000037295 1 1q21 SHC (Src homology 2 domain containing) transforming protein 1 protein-coding SHC1 SHC (Src homology 2 domain containing) transforming protein 1 O SH2 domain protein C1|SHC (Src homology 2 domain-containing) transforming protein 1|SHC-transforming protein 1|SHC-transforming protein 3|SHC-transforming protein A 20121230 -9606 6465 SHC1P1 - - HGNC:10841 X Xq11.1 SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 1 pseudo SHC1P1 SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 1 O - 20121230 -9606 6466 SHC1P2 - SHCL1 HGNC:10842|MIM:600739 17 17q21.31 SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 2 pseudo SHC1P2 SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 2 O - 20121230 -9606 6468 FBXW4 RP11-529I10.3 DAC|FBW4|FBWD4|SHFM3|SHSF3 HGNC:10847|MIM:608071|Ensembl:ENSG00000107829|HPRD:06994|Vega:OTTHUMG00000018938 10 10q24 F-box and WD repeat domain containing 4 protein-coding FBXW4 F-box and WD repeat domain containing 4 O F-box and WD-40 domain protein 4|F-box and WD-40 domain-containing protein 4|F-box/WD repeat protein 4|F-box/WD repeat-containing protein 4|dactylin 20121230 -9606 6469 SHH tcag7.582 HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS HGNC:10848|MIM:600725|Ensembl:ENSG00000164690|HPRD:02838|Vega:OTTHUMG00000151349 7 7q36 sonic hedgehog protein-coding SHH sonic hedgehog O sonic hedgehog homolog|sonic hedgehog protein 20121230 -9606 6470 SHMT1 - CSHMT|SHMT HGNC:10850|MIM:182144|Ensembl:ENSG00000176974|HPRD:01643|Vega:OTTHUMG00000059094 17 17p11.2 serine hydroxymethyltransferase 1 (soluble) protein-coding SHMT1 serine hydroxymethyltransferase 1 (soluble) O 14 kDa protein|cytoplasmic serine hydroxymethyltransferase|glycine hydroxymethyltransferase|serine hydroxymethyltransferase, cytosolic|serine methylase 20121230 -9606 6471 SHMT1P1 - SHMT1P HGNC:10851 1 1p34 serine hydroxymethyltransferase 1 (soluble) pseudogene 1 pseudo SHMT1P1 serine hydroxymethyltransferase 1 (soluble) pseudogene 1 O - 20121230 -9606 6472 SHMT2 - GLYA|SHMT HGNC:10852|MIM:138450|Ensembl:ENSG00000182199|HPRD:00717|Vega:OTTHUMG00000171246 12 12q12-q14 serine hydroxymethyltransferase 2 (mitochondrial) protein-coding SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) O GLY A+|glycine auxotroph A, human complement for hamster|glycine hydroxymethyltransferase|serine aldolase|serine hydroxymethylase|serine hydroxymethyltransferase, mitochondrial|serine methylase|threonine aldolase 20121230 -9606 6473 SHOX - GCFX|PHOG|SHOXY|SS HGNC:10853|MIM:312865|MIM:400020|Ensembl:ENSG00000185960|HPRD:02430|Vega:OTTHUMG00000021053 X|Y Xp22.33;Yp11.3 short stature homeobox protein-coding SHOX short stature homeobox O growth control factor, X-linked|pseudoautosomal homeobox-containing osteogenic protein|short stature homeobox protein|short stature homeobox-containing protein 20121230 -9606 6474 SHOX2 - OG12|OG12X|SHOT HGNC:10854|MIM:602504|Ensembl:ENSG00000168779|Ensembl:ENSG00000258518|Vega:OTTHUMG00000158755 3 3q25.32 short stature homeobox 2 protein-coding SHOX2 short stature homeobox 2 O SHOX homologous gene on chromosome 3|homeobox protein Og12X|paired-related homeobox protein SHOT|short stature homeobox protein 2 20121230 -9606 6476 SI - - HGNC:10856|MIM:609845|Ensembl:ENSG00000090402|HPRD:01962|Vega:OTTHUMG00000158065 3 3q25.2-q26.2 sucrase-isomaltase (alpha-glucosidase) protein-coding SI sucrase-isomaltase (alpha-glucosidase) O oligosaccharide alpha-1,6-glucosidase|sucrase-isomaltase, intestinal 20121230 -9606 6477 SIAH1 - SIAH1A HGNC:10857|MIM:602212|Ensembl:ENSG00000196470|HPRD:03736|Vega:OTTHUMG00000175417 16 16q12 siah E3 ubiquitin protein ligase 1 protein-coding SIAH1 siah E3 ubiquitin protein ligase 1 O E3 ubiquitin-protein ligase SIAH1|seven in absentia homolog 1|siah-1a 20121230 -9606 6478 SIAH2 - hSiah2 HGNC:10858|MIM:602213|Ensembl:ENSG00000181788|HPRD:03737|Vega:OTTHUMG00000159847 3 3q25 siah E3 ubiquitin protein ligase 2 protein-coding SIAH2 siah E3 ubiquitin protein ligase 2 O E3 ubiquitin-protein ligase SIAH2|seven in absentia homolog 2|siah-2 20121230 -9606 6480 ST6GAL1 - SIAT1|ST6GalI|ST6N HGNC:10860|MIM:109675|Ensembl:ENSG00000073849|HPRD:00184|Vega:OTTHUMG00000156500 3 3q27-q28 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 O B-cell antigen CD75|CMP-N-acetylneuraminate beta-galactosamide alpha-2,6-sialyltransferase|CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 1|ST6Gal I|alpha 2,6-ST 1|beta-galactoside alpha-2,6-sialyltransferase 1|sialyltransferase 1 (beta-galactoside alpha-2,6-sialyltransferase) 20121230 -9606 6482 ST3GAL1 - Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O HGNC:10862|MIM:607187|Ensembl:ENSG00000008513|HPRD:06219|Vega:OTTHUMG00000164534 8 8q24.22 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 O CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1|Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase|SIAT4-A|ST3GalI|alpha 2,3-ST 1|beta-galactoside alpha-2,3-sialyltransferase 1|sialyltransferase 4A (beta-galactosidase alpha-2,3-sialytransferase)|sialyltransferase 4A (beta-galactoside alpha-2,3-sialyltransferase)|sialyltransferase 4A (beta-galactoside alpha-2,3-sialytransferase) 20121230 -9606 6483 ST3GAL2 - Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 HGNC:10863|MIM:607188|Ensembl:ENSG00000157350|HPRD:06220|Vega:OTTHUMG00000137580 16 16q22.1 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 O CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2|Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase|SIAT4-B|ST3Gal II|alpha 2,3-ST 2|beta-galactoside alpha-2,3-sialyltransferase 2|beta-galactoside alpha-2,3-sialytransferase|sialyltransferase 4B (beta-galactosidase alpha-2,3-sialytransferase) 20121230 -9606 6484 ST3GAL4 - CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ HGNC:10864|MIM:104240|Ensembl:ENSG00000110080|HPRD:00084|Vega:OTTHUMG00000165830 11 11q24.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 O CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4|SAT-3|SIAT4-C|ST-4|ST3GalA.2|alpha 2,3-ST 4|alpha 2,3-sialyltransferase IV|alpha-3-N-acetylneuraminyltransferase|beta-galactoside alpha-2,3-sialyltransferase 4|gal-NAc6S|gal-beta-1,4-GalNAc-alpha-2,3-sialyltransferase|sialyltransferase 4C (beta-galactosidase alpha-2,3-sialytransferase)|sialyltransferase 4C (beta-galactoside alpha-2,3-sialytransferase) 20121230 -9606 6487 ST3GAL3 - MRT12|SIAT6|ST3GALII|ST3GalIII|ST3N HGNC:10866|MIM:606494|Ensembl:ENSG00000126091|HPRD:05930|Vega:OTTHUMG00000007561 1 1p34.1 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 protein-coding ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 O CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase|Gal beta-1,3(4)GlcNAc alpha-2,3 sialyltransferase|ST3Gal III|alpha 2,3-ST 3|alpha 2,3-sialyltransferase III|alpha-2,3-sialyltransferase II|sialyltransferase 6 (N-acetyllacosaminide alpha 2,3-sialyltransferase) 20121230 -9606 6489 ST8SIA1 - GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI HGNC:10869|MIM:601123|Ensembl:ENSG00000111728|HPRD:03078|Vega:OTTHUMG00000169098 12 12p12.1-p11.2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 O alpha-2,8-sialyltransferase 8A|alpha-N-acetylneuraminide alpha-2,8-sialyltransferase|disialoganglioside (GD3) synthase|ganglioside GD3 synthase|ganglioside GT3 synthase|ganglioside-specific alpha-2,8-polysialyltransferase|sialyltransferase 8 (alpha-N-acetylneuraminate: alpha-2,8-sialytransferase, GD3 synthase) A|sialyltransferase 8A (alpha-N-acetylneuraminate: alpha-2,8-sialyltransferase, GD3 synthase)|sialytransferase St8Sia I 20121230 -9606 6490 PMEL - D12S53E|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100 HGNC:10880|MIM:155550|Ensembl:ENSG00000185664|HPRD:01117|Vega:OTTHUMG00000170573 12 12q13-q14 premelanosome protein protein-coding PMEL premelanosome protein O melanocyte protein PMEL|melanocyte protein Pmel 17|melanocyte protein mel 17|melanocytes lineage-specific antigen GP100|melanoma-associated ME20 antigen|melanosomal matrix protein17|silver locus protein homolog|silver, mouse, homolog of 20121230 -9606 6491 STIL RP1-18D14.8 MCPH7|SIL HGNC:10879|MIM:181590|Ensembl:ENSG00000123473|HPRD:01627|Vega:OTTHUMG00000007851 1 1p32 SCL/TAL1 interrupting locus protein-coding STIL SCL/TAL1 interrupting locus O SCL-interrupting locus protein|TAL-1-interrupting locus protein 20121230 -9606 6492 SIM1 - bHLHe14 HGNC:10882|MIM:603128|Ensembl:ENSG00000112246|HPRD:07049|Vega:OTTHUMG00000015275 6 6q16.3-q21 single-minded homolog 1 (Drosophila) protein-coding SIM1 single-minded homolog 1 (Drosophila) O class E basic helix-loop-helix protein 14|single-minded homolog 1 20121230 -9606 6493 SIM2 - HMC13F06|HMC29C01|SIM|bHLHe15 HGNC:10883|MIM:600892|Ensembl:ENSG00000159263|HPRD:02935|Vega:OTTHUMG00000086637 21 21q22.13 single-minded homolog 2 (Drosophila) protein-coding SIM2 single-minded homolog 2 (Drosophila) O class E basic helix-loop-helix protein 15|single-minded homolog 2|single-minded homolog 2, short isoform|transcription factor SIM2 20121230 -9606 6494 SIPA1 - SPA1 HGNC:10885|MIM:602180|Ensembl:ENSG00000213445|HPRD:03713|Vega:OTTHUMG00000166541 11 11q13 signal-induced proliferation-associated 1 protein-coding SIPA1 signal-induced proliferation-associated 1 O GTPase-activating protein Spa-1|p130 SPA-1|signal-induced proliferation-associated gene 1|signal-induced proliferation-associated protein 1|sipa-1 20121230 -9606 6495 SIX1 - BOS3|DFNA23|TIP39 HGNC:10887|MIM:601205|Ensembl:ENSG00000126778|HPRD:03125|Vega:OTTHUMG00000140334 14 14q23.1 SIX homeobox 1 protein-coding SIX1 SIX homeobox 1 O homeobox protein SIX1|sine oculis homeobox homolog 1 20121230 -9606 6496 SIX3 - HPE2 HGNC:10889|MIM:603714|Ensembl:ENSG00000138083|HPRD:04756|Vega:OTTHUMG00000152424 2 2p21 SIX homeobox 3 protein-coding SIX3 SIX homeobox 3 O homeobox protein SIX3|sine oculis homeobox homolog 3 20121230 -9606 6497 SKI - SGS|SKV HGNC:10896|MIM:164780|Ensembl:ENSG00000157933|HPRD:01271|Vega:OTTHUMG00000001407 1 1p36.33 v-ski sarcoma viral oncogene homolog (avian) protein-coding SKI v-ski sarcoma viral oncogene homolog (avian) O proto-oncogene c-Ski|ski oncogene|ski oncoprotein 20121230 -9606 6498 SKIL - SNO|SnoA|SnoI|SnoN HGNC:10897|MIM:165340|Ensembl:ENSG00000136603|HPRD:01319|Vega:OTTHUMG00000158831 3 3q26 SKI-like oncogene protein-coding SKIL SKI-like oncogene O ski-like protein|ski-related oncogene snoN 20121230 -9606 6499 SKIV2L DADB-112B14.3 170A|DDX13|HLP|SKI2|SKI2W|SKIV2|THES2 HGNC:10898|MIM:600478|Ensembl:ENSG00000204351|HPRD:02724|Vega:OTTHUMG00000031146 6 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) protein-coding SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) O helicase SKI2W|helicase-like protein 20121230 -9606 6500 SKP1 - EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A HGNC:10899|MIM:601434|Ensembl:ENSG00000113558|HPRD:03255|Vega:OTTHUMG00000129117 5 5q31 S-phase kinase-associated protein 1 protein-coding SKP1 S-phase kinase-associated protein 1 O OCP-2|RNA polymerase II elongation factor-like protein OCP2|SIII|cyclin A/CDK2-associated p19|cyclin A/CDK2-associated protein p19|cyclin-A/CDK2-associated protein p19|organ of Corti protein 2|organ of Corti protein II|p19skp1|transcription elongation factor B 20121230 -9606 6502 SKP2 - FBL1|FBXL1|FLB1|p45 HGNC:10901|MIM:601436|Ensembl:ENSG00000145604|HPRD:03256|Vega:OTTHUMG00000131106 5 5p13 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase protein-coding SKP2 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase O CDK2/cyclin A-associated protein p45|F-box/LRR-repeat protein 1|S-phase kinase-associated protein 2|S-phase kinase-associated protein 2 (p45)|p45skp2 20121230 -9606 6503 SLA - SLA1|SLAP HGNC:10902|MIM:601099|Ensembl:ENSG00000155926|HPRD:03060|Vega:OTTHUMG00000164439 8 8q24 Src-like-adaptor protein-coding SLA Src-like-adaptor O SLAP-1|hSLAP|src-like-adapter|src-like-adapter protein 1 20121230 -9606 6504 SLAMF1 RP11-528G1.4 CD150|CDw150|SLAM HGNC:10903|MIM:603492|Ensembl:ENSG00000117090|HPRD:04603|Vega:OTTHUMG00000024006 1 1q23.3 signaling lymphocytic activation molecule family member 1 protein-coding SLAMF1 signaling lymphocytic activation molecule family member 1 O IPO-3|signaling lymphocytic activation molecule 20121230 -9606 6505 SLC1A1 RP11-6J24.1 EAAC1|EAAT3 HGNC:10939|MIM:133550|Ensembl:ENSG00000106688|HPRD:00597|Vega:OTTHUMG00000019468 9 9p24 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein-coding SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 O excitatory amino acid carrier 1|excitatory amino acid transporter 3|neuronal and epithelial glutamate transporter|sodium-dependent glutamate/aspartate transporter 3|solute carrier family 1 member 1 20121230 -9606 6506 SLC1A2 - EAAT2|GLT-1 HGNC:10940|MIM:600300|Ensembl:ENSG00000110436|HPRD:02625|Vega:OTTHUMG00000044391 11 11p13-p12 solute carrier family 1 (glial high affinity glutamate transporter), member 2 protein-coding SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 O excitatory amino acid transporter 2|excitotoxic amino acid transporter 2|glutamate/aspartate transporter II|sodium-dependent glutamate/aspartate transporter 2 20121230 -9606 6507 SLC1A3 - EA6|EAAT1|GLAST|GLAST1 HGNC:10941|MIM:600111|Ensembl:ENSG00000079215|HPRD:02523|Vega:OTTHUMG00000090793 5 5p13 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 O GLAST-1|excitatory amino acid transporter 1|sodium-dependent glutamate/aspartate transporter 1|solute carrier family 1 member 3 20121230 -9606 6508 SLC4A3 - AE3|SLC2C HGNC:11029|MIM:106195|Ensembl:ENSG00000114923|HPRD:00109|Vega:OTTHUMG00000059238 2 2q36 solute carrier family 4, anion exchanger, member 3 protein-coding SLC4A3 solute carrier family 4, anion exchanger, member 3 O AE 3|Anion exchanger 3, neuronal|CAE3/BAE3|anion exchange protein 3|cardiac/brain band 3-like protein|neuronal band 3-like protein|solute carrier family 4 member 3 20121230 -9606 6509 SLC1A4 - ASCT1|SATT HGNC:10942|MIM:600229|Ensembl:ENSG00000115902|HPRD:02576|Vega:OTTHUMG00000129537 2 2p15-p13 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 protein-coding SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 O ASCT-1|alanine/serine/cysteine/threonine transporter 1|glutamate/neutral amino acid transporter|neutral amino acid transporter A|solute carrier family 1 member 4 20121230 -9606 6510 SLC1A5 - AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC HGNC:10943|MIM:109190|Ensembl:ENSG00000105281|HPRD:00173 19 19q13.3 solute carrier family 1 (neutral amino acid transporter), member 5 protein-coding SLC1A5 solute carrier family 1 (neutral amino acid transporter), member 5 O ATB(0)|RD114 virus receptor|RD114/simian type D retrovirus receptor|baboon M7 virus receptor|neutral amino acid transporter B|neutral amino acid transporter B(0)|sodium-dependent neutral amino acid transporter type 2|solute carrier family 1 member 5 20121230 -9606 6511 SLC1A6 - EAAT4 HGNC:10944|MIM:600637|Ensembl:ENSG00000105143|HPRD:09005 19 19p13.12 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 protein-coding SLC1A6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 O excitatory amino acid transporter 4|sodium-dependent glutamate/aspartate transporter|solute carrier family 1 member 6 20121230 -9606 6512 SLC1A7 RP11-334A14.7 AAAT|EAAT5 HGNC:10945|MIM:604471|Ensembl:ENSG00000162383|HPRD:09194|Vega:OTTHUMG00000008937 1 1p32.3 solute carrier family 1 (glutamate transporter), member 7 protein-coding SLC1A7 solute carrier family 1 (glutamate transporter), member 7 O excitatory amino acid transporter 5|excitatory amino acid transporter 5 (retinal glutamate transporter)|excitatory amino acid transporter 5a long|retinal glutamate transporter|solute carrier family 1 member 7 20121230 -9606 6513 SLC2A1 - DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|PED HGNC:11005|MIM:138140|Ensembl:ENSG00000117394|HPRD:00683|Vega:OTTHUMG00000007657 1 1p34.2 solute carrier family 2 (facilitated glucose transporter), member 1 protein-coding SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 O GLUT-1|glucose transporter type 1, erythrocyte/brain|hepG2 glucose transporter|solute carrier family 2, facilitated glucose transporter member 1 20121230 -9606 6514 SLC2A2 - GLUT2 HGNC:11006|MIM:138160|Ensembl:ENSG00000163581|HPRD:00685|Vega:OTTHUMG00000158997 3 3q26.1-q26.2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding SLC2A2 solute carrier family 2 (facilitated glucose transporter), member 2 O GLUT-2|glucose transporter type 2, liver|solute carrier family 2, facilitated glucose transporter member 2 20121230 -9606 6515 SLC2A3 - GLUT3 HGNC:11007|MIM:138170|Ensembl:ENSG00000059804|HPRD:00686|Vega:OTTHUMG00000133685 12 12p13.3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 O GLUT-3|glucose transporter type 3, brain|solute carrier family 2, facilitated glucose transporter member 3 20121230 -9606 6517 SLC2A4 - GLUT4 HGNC:11009|MIM:138190|Ensembl:ENSG00000181856|HPRD:00688|Vega:OTTHUMG00000102181 17 17p13 solute carrier family 2 (facilitated glucose transporter), member 4 protein-coding SLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4 O GLUT-4|glucose transporter type 4, insulin-responsive|insulin-responsive glucose transporter type 4|solute carrier family 2, facilitated glucose transporter member 4 20121230 -9606 6518 SLC2A5 RP5-963K15.1 GLUT-5|GLUT5 HGNC:11010|MIM:138230|Ensembl:ENSG00000142583|HPRD:00690|Vega:OTTHUMG00000001771 1 1p36.2 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 protein-coding SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 O glucose transporter type 5, small intestine|glucose transporter-like protein 5|solute carrier family 2, facilitated glucose transporter member 5 20121230 -9606 6519 SLC3A1 - ATR1|CSNU1|D2H|NBAT|RBAT HGNC:11025|MIM:104614|Ensembl:ENSG00000138079|HPRD:00090|Vega:OTTHUMG00000128759 2 2p16.3 solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1 protein-coding SLC3A1 solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1 O B(0,+)-type amino acid transport protein|SLC3A1 variant B|SLC3A1 variant C|SLC3A1 variant D|SLC3A1 variant E|SLC3A1 variant F|SLC3A1 variant G|amino acid transporter 1|neutral and basic amino acid transport protein rBAT|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters), member 1 20121230 -9606 6520 SLC3A2 - 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE HGNC:11026|MIM:158070|Ensembl:ENSG00000168003|HPRD:01148|Vega:OTTHUMG00000074091 11 11q13 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 protein-coding SLC3A2 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 O 4F2 cell-surface antigen heavy chain|CD98 heavy chain|antigen defined by monoclonal antibody 4F2, heavy chain|antigen identified by monoclonal antibodies 4F2, TRA1.10, TROP4, and T43|lymphocyte activation antigen 4F2 large subunit|monoclonal antibody 44D7 20121230 -9606 6521 SLC4A1 - AE1|BND3|CD233|DI|EMPB3|EPB3|FR|RTA1A|SW|WD|WD1|WR HGNC:11027|MIM:109270|Ensembl:ENSG00000004939|HPRD:00175|Vega:OTTHUMG00000156843 17 17q21.31 solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) protein-coding SLC4A1 solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) O Froese blood group|Swann blood group|Waldner blood group|Wright blood group|anion exchange protein 1|anion exchanger 1|anion exchanger-1|band 3 anion transport protein|erythrocyte membrane protein band 3|erythroid anion exchange protein|solute carrier family 4, anion exchanger, number 1 20121230 -9606 6522 SLC4A2 - AE2|BND3L|EPB3L1|HKB3|NBND3 HGNC:11028|MIM:109280|Ensembl:ENSG00000164889|HPRD:02728|Vega:OTTHUMG00000158443 7 7q36.1 solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) protein-coding SLC4A2 solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) O AE 2|anion exchange protein 2|anion exchanger 2 type a|anion exchanger 2 type b1|anion exchanger 2 type b2|non-erythroid band 3-like protein|solute carrier family 4 member 2 20121230 -9606 6523 SLC5A1 RP1-127L4.1 D22S675|NAGT|SGLT1 HGNC:11036|MIM:182380|Ensembl:ENSG00000100170|HPRD:01668|Vega:OTTHUMG00000030768 22 22q12.3 solute carrier family 5 (sodium/glucose cotransporter), member 1 protein-coding SLC5A1 solute carrier family 5 (sodium/glucose cotransporter), member 1 O Na+/glucose cotransporter 1|high affinity sodium-glucose cotransporter|sodium/glucose cotransporter 1 20121230 -9606 6524 SLC5A2 - SGLT2 HGNC:11037|MIM:182381|Ensembl:ENSG00000140675|HPRD:08919|Vega:OTTHUMG00000176620 16 16p11.2 solute carrier family 5 (sodium/glucose cotransporter), member 2 protein-coding SLC5A2 solute carrier family 5 (sodium/glucose cotransporter), member 2 O Na(+)/glucose cotransporter 2|low affinity sodium-glucose cotransporter|sodium/glucose cotransporter 2|solute carrier family 5 (sodium/glucose transporter), member 2|solute carrier family 5 member 2 20121230 -9606 6525 SMTN - - HGNC:11126|MIM:602127|Ensembl:ENSG00000183963|HPRD:03675|Vega:OTTHUMG00000151203 22 22q12.2 smoothelin protein-coding SMTN smoothelin O - 20121230 -9606 6526 SLC5A3 - SMIT|SMIT1|SMIT2 HGNC:11038|MIM:600444|Ensembl:ENSG00000198743|HPRD:02708|Vega:OTTHUMG00000065821 21 21q22.12 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 protein-coding SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 O BCW2 protein|Na(+)/myo-inositol cotransporter|human solute carrier family 5, member 3, Sodium/myo-inositol cotransporter|sodium/myo-inositol cotransporter|sodium/myo-inositol cotransporter 1|sodium/myo-inositol transporter 1|solute carrier family 5 (inositol transporter), member 3|solute carrier family 5 (inositol transporters), member 3|solute carrier family 5 member 3 20121230 -9606 6527 SLC5A4 - DJ90G24.4|SAAT1|SGLT3 HGNC:11039|Ensembl:ENSG00000100191|HPRD:10238|Vega:OTTHUMG00000150007 22 22q12.3 solute carrier family 5 (low affinity glucose cotransporter), member 4 protein-coding SLC5A4 solute carrier family 5 (low affinity glucose cotransporter), member 4 O Na(+)/glucose cotransporter 3|low affinity sodium glucose cotransporter|low affinity sodium-glucose cotransporter|sodium transporter|sodium/glucose cotransporter 3|solute carrier family 5 (neutral amino acid transporters, system A), member 4|solute carrier family 5 member 4 20121230 -9606 6528 SLC5A5 - NIS|TDH1 HGNC:11040|MIM:601843|Ensembl:ENSG00000105641|HPRD:03504 19 19p13.11 solute carrier family 5 (sodium iodide symporter), member 5 protein-coding SLC5A5 solute carrier family 5 (sodium iodide symporter), member 5 O Na(+)/I(-) cotransporter|Na(+)/I(-) symporter|sodium/iodide cotransporter 20121230 -9606 6529 SLC6A1 - GABATHG|GABATR|GAT1 HGNC:11042|MIM:137165|Ensembl:ENSG00000157103|HPRD:00664|Vega:OTTHUMG00000044208 3 3p25.3 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 protein-coding SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 O GAT-1|sodium- and chloride-dependent GABA transporter 1|solute carrier family 6 member 1 20121230 -9606 6530 SLC6A2 - NAT1|NET|NET1|SLC6A5 HGNC:11048|MIM:163970|Ensembl:ENSG00000103546|HPRD:01232|Vega:OTTHUMG00000133208 16 16q12.2 solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 protein-coding SLC6A2 solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 O neurotransmitter transporter|norepinephrine transporter|sodium-dependent noradrenaline transporter|solute carrier family 6 member 5 20121230 -9606 6531 SLC6A3 - DAT|DAT1 HGNC:11049|MIM:126455|Ensembl:ENSG00000142319|HPRD:00543|Vega:OTTHUMG00000131016 5 5p15.3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 protein-coding SLC6A3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 O DA transporter|sodium-dependent dopamine transporter|solute carrier family 6 member 3 20121230 -9606 6532 SLC6A4 - 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT HGNC:11050|MIM:182138|Ensembl:ENSG00000108576|HPRD:01640|Vega:OTTHUMG00000132751 17 17q11.2 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 protein-coding SLC6A4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 O 5-hydroxytryptamine transporter|5HT transporter|Na+/Cl- dependent serotonin transporter|sodium-dependent serotonin transporter 20121230 -9606 6533 SLC6A6 - TAUT HGNC:11052|MIM:186854|Ensembl:ENSG00000131389|HPRD:01734|Vega:OTTHUMG00000155525 3 3p25.1 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 protein-coding SLC6A6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 O sodium- and chloride-dependent taurine transporter|solute carrier family 6 member 6 20121230 -9606 6534 SLC6A7 - PROT HGNC:11054|MIM:606205|Ensembl:ENSG00000011083|HPRD:09371|Vega:OTTHUMG00000130046 5 5q32 solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 protein-coding SLC6A7 solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 O brain-specific L-proline transporter|sodium-dependent proline transporter|solute carrier family 6 member 7 20121230 -9606 6535 SLC6A8 - CRT|CRTR|CT1 HGNC:11055|MIM:300036|Ensembl:ENSG00000130821|HPRD:02073|Vega:OTTHUMG00000024208 X Xq28 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 protein-coding SLC6A8 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 O creatine transporter 1|creatine transporter SLC6A8|sodium- and chloride-dependent creatine transporter 1|solute carrier family 6 member 8 20121230 -9606 6536 SLC6A9 - GLYT1 HGNC:11056|MIM:601019|Ensembl:ENSG00000196517|HPRD:03010|Vega:OTTHUMG00000008294 1 1p33 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein-coding SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 O glyT-1|sodium- and chloride-dependent glycine transporter 1|solute carrier family 6 member 9 20121230 -9606 6538 SLC6A11 - GAT-3|GAT3|GAT4 HGNC:11044|MIM:607952|Ensembl:ENSG00000132164|HPRD:06406|Vega:OTTHUMG00000129718 3 3p25.3 solute carrier family 6 (neurotransmitter transporter, GABA), member 11 protein-coding SLC6A11 solute carrier family 6 (neurotransmitter transporter, GABA), member 11 O sodium- and chloride-dependent GABA transporter 3|solute carrier family 6 member 11 20121230 -9606 6539 SLC6A12 - BGT-1|BGT1|GAT2 HGNC:11045|MIM:603080|Ensembl:ENSG00000111181|HPRD:04358|Vega:OTTHUMG00000090309 12 12p13 solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 protein-coding SLC6A12 solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 O Na(+)/Cl(-) betaine/GABA transporter|gamma-aminobutyric acid transporter|sodium- and chloride-dependent betaine transporter 20121230 -9606 6540 SLC6A13 - GAT-2|GAT2 HGNC:11046|Ensembl:ENSG00000010379|HPRD:10239|Vega:OTTHUMG00000168053 12 12p13.3 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 protein-coding SLC6A13 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 O GABA transport protein|sodium- and chloride-dependent GABA transporter 2 20121230 -9606 6541 SLC7A1 RP11-274A8.1 ATRC1|CAT-1|ERR|HCAT1|REC1L HGNC:11057|MIM:104615|Ensembl:ENSG00000139514|HPRD:00091|Vega:OTTHUMG00000016658 13 13q12.3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 O CAT1|amino acid transporter, cationic 1|ecotropic retroviral leukemia receptor homolog|ecotropic retroviral receptor|ecotropic retrovirus receptor homolog|high affinity cationic amino acid transporter 1|solute carrier family 7 member 1|system Y+ basic amino acid transporter 20121230 -9606 6542 SLC7A2 - ATRC2|CAT2|HCAT2 HGNC:11060|MIM:601872|Ensembl:ENSG00000003989|HPRD:03524|Vega:OTTHUMG00000130819 8 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 protein-coding SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 O low affinity cationic amino acid transporter 2 20121230 -9606 6543 SLC8A2 - NCX2 HGNC:11069|MIM:601901|Ensembl:ENSG00000118160|HPRD:15990 19 19q13.3 solute carrier family 8 (sodium/calcium exchanger), member 2 protein-coding SLC8A2 solute carrier family 8 (sodium/calcium exchanger), member 2 O Na(+)/Ca(2+)-exchange protein 2|Na+/Ca2+-exchanging protein Nac2|sodium-calcium exchanger 2|sodium/calcium exchanger 2|solute carrier family 8 (sodium-calcium exchanger), member 2|solute carrier family 8 member 2 20121230 -9606 6545 SLC7A4 - CAT-4|CAT4|HCAT3|VH HGNC:11062|MIM:603752|Ensembl:ENSG00000099960|HPRD:04780|Vega:OTTHUMG00000150896 22 22q11.21 solute carrier family 7 (orphan transporter), member 4 protein-coding SLC7A4 solute carrier family 7 (orphan transporter), member 4 O Ig heavy chain variable region|VH 3 family|cationic amino acid transporter 4|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4|solute carrier family 7 member 4 20121230 -9606 6546 SLC8A1 - NCX1 HGNC:11068|MIM:182305|Ensembl:ENSG00000183023|HPRD:01659|Vega:OTTHUMG00000102183 2 2p23-p22 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 O Na(+)/Ca(2+)-exchange protein 1|Na+/Ca++ exchanger|Na+/Ca2+ exchanger|sodium/calcium exchanger 1 20121230 -9606 6547 SLC8A3 - NCX3 HGNC:11070|MIM:607991|Ensembl:ENSG00000100678|HPRD:09723|Vega:OTTHUMG00000152342 14 14q24.1 solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding SLC8A3 solute carrier family 8 (sodium/calcium exchanger), member 3 O Na(+)/Ca(2+)-exchange protein 3|Na+/Ca2+ exchanger 3|sodium/calcium exchanger 3|sodium/calcium exchanger SLC8A3|solute carrier family 8 (sodium-calcium exchanger), member 3 20121230 -9606 6548 SLC9A1 RP4-633N17.1 APNH|NHE-1|NHE1 HGNC:11071|MIM:107310|Ensembl:ENSG00000090020|HPRD:00123|Vega:OTTHUMG00000004271 1 1p36.1-p35 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 protein-coding SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 O Na(+)/H(+) exchanger 1|Na-Li countertransporter|sodium/hydrogen exchanger 1|solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive)|solute carrier family 9 (sodium/hydrogen exchanger), member 1 (antiporter, Na+/H+, amiloride sensitive) 20121230 -9606 6549 SLC9A2 - NHE2 HGNC:11072|MIM:600530|Ensembl:ENSG00000115616|HPRD:02756|Vega:OTTHUMG00000130778 2 2q11.2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 protein-coding SLC9A2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 O NHE-2|Na(+)/H(+) exchanger 2|sodium/hydrogen exchanger 2|solute carrier family 9 (sodium/hydrogen exchanger)|solute carrier family 9 (sodium/hydrogen exchanger), member 2|solute carrier family 9 member 2 20121230 -9606 6550 SLC9A3 - NHE3 HGNC:11073|MIM:182307|Ensembl:ENSG00000066230|HPRD:01660|Vega:OTTHUMG00000090315 5 5p15.3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 protein-coding SLC9A3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 O NHE-3|Na(+)/H(+) exchanger 3|sodium/hydrogen exchanger 3|solute carrier family 9 (sodium/hydrogen exchanger)|solute carrier family 9 (sodium/hydrogen exchanger), member 3|solute carrier family 9 member 3 20121230 -9606 6551 SLC9A3P1 RP11-56A21.3 NHE3P|SLC9A3P HGNC:11074 10 10q11.23 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 1 pseudo SLC9A3P1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 1 O - 20121209 -9606 6553 SLC9A5 - NHE5 HGNC:11078|MIM:600477|Ensembl:ENSG00000135740|HPRD:02723|Vega:OTTHUMG00000172935 16 16q22.1 solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 protein-coding SLC9A5 solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 O NHE-5|Na(+)/H(+) exchanger 5|sodium/hydrogen exchanger 5|solute carrier family 9 (sodium/hydrogen exchanger)|solute carrier family 9 (sodium/hydrogen exchanger), member 5|solute carrier family 9 member 5 20121230 -9606 6554 SLC10A1 GIG29 NTCP HGNC:10905|MIM:182396|Ensembl:ENSG00000100652|HPRD:01672|Vega:OTTHUMG00000171236 14 14q24.1 solute carrier family 10 (sodium/bile acid cotransporter family), member 1 protein-coding SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter family), member 1 O Na(+)/bile acid cotransporter|Na(+)/taurocholate transport protein|Na/taurocholate cotransporting polypeptide|cell growth-inhibiting gene 29 protein|growth-inhibiting protein 29|sodium/bile acid cotransporter|sodium/taurocholate cotransporter|sodium/taurocholate cotransporting polypeptide|solute carrier family 10 member 1 20121230 -9606 6555 SLC10A2 - ASBT|IBAT|ISBT|NTCP2|PBAM HGNC:10906|MIM:601295|Ensembl:ENSG00000125255|HPRD:03189|Vega:OTTHUMG00000017313 13 13q33 solute carrier family 10 (sodium/bile acid cotransporter family), member 2 protein-coding SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter family), member 2 O Na(+)-dependent ileal bile acid transporter|ileal apical sodium-dependent bile acid transporter|ileal sodium-dependent bile acid transporter|ileal sodium/bile acid cotransporter|sodium/taurocholate cotransporting polypeptide, ileal 20121230 -9606 6556 SLC11A1 - LSH|NRAMP|NRAMP1 HGNC:10907|MIM:600266|Ensembl:ENSG00000018280|HPRD:02601|Vega:OTTHUMG00000086747 2 2q35 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 protein-coding SLC11A1 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 O NRAMP 1|natural resistance-associated macrophage protein 1|solute carrier family 11 (sodium/phosphate symporters), member 1 20121230 -9606 6557 SLC12A1 - BSC1|NKCC2 HGNC:10910|MIM:600839|Ensembl:ENSG00000074803|HPRD:02908|Vega:OTTHUMG00000131495 15 15q15-q21.1 solute carrier family 12 (sodium/potassium/chloride transporters), member 1 protein-coding SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporters), member 1 O NKCC2A variant A|Na-K-2Cl cotransporter|bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2|kidney-specific Na-K-Cl symporter|solute carrier family 12 member 1 20121230 -9606 6558 SLC12A2 - BSC|BSC2|NKCC1 HGNC:10911|MIM:600840|Ensembl:ENSG00000064651|HPRD:06775|Vega:OTTHUMG00000128983 5 5q23.3 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 protein-coding SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 O basolateral Na-K-Cl symporter|bumetanide-sensitive sodium-(potassium)-chloride cotransporter 1|solute carrier family 12 member 2 20121230 -9606 6559 SLC12A3 - NCC|NCCT|TSC HGNC:10912|MIM:600968|Ensembl:ENSG00000070915|HPRD:02984|Vega:OTTHUMG00000133284 16 16q13 solute carrier family 12 (sodium/chloride transporters), member 3 protein-coding SLC12A3 solute carrier family 12 (sodium/chloride transporters), member 3 O Na-Cl cotransporter|Na-Cl symporter|NaCl electroneutral thiazide-sensitive cotransporter|solute carrier family 12 member 3|thiazide-sensitive Na-Cl cotransporter|thiazide-sensitive sodium-chloride cotransporter 20121230 -9606 6560 SLC12A4 - KCC1 HGNC:10913|MIM:604119|Ensembl:ENSG00000124067|HPRD:04987|Vega:OTTHUMG00000137535 16 16q22.1 solute carrier family 12 (potassium/chloride transporters), member 4 protein-coding SLC12A4 solute carrier family 12 (potassium/chloride transporters), member 4 O K-Cl cotransporter|electroneutral potassium-chloride cotransporter 1|erythroid K-Cl cotransporter 1|erythroid K:Cl cotransporter|hKCC1|potassium/chloride cotransporter 1|solute carrier family 12 member 4 20121230 -9606 6561 SLC13A1 - NAS1|NaSi-1 HGNC:10916|MIM:606193|Ensembl:ENSG00000081800|HPRD:08394|Vega:OTTHUMG00000157087 7 7q31.32 solute carrier family 13 (sodium/sulfate symporters), member 1 protein-coding SLC13A1 solute carrier family 13 (sodium/sulfate symporters), member 1 O Na(+)/sulfate cotransporter|hNaSi-1|renal sodium/sulfate cotransporter|solute carrier family 13 (sodium/sulphate symporters), member 1|solute carrier family 13 member 1 20121230 -9606 6563 SLC14A1 - HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE HGNC:10918|MIM:613868|Ensembl:ENSG00000141469|HPRD:00195|Vega:OTTHUMG00000132617 18 18q11-q12 solute carrier family 14 (urea transporter), member 1 (Kidd blood group) protein-coding SLC14A1 solute carrier family 14 (urea transporter), member 1 (Kidd blood group) O SLC14A1 JK|urea transporter 1|urea transporter JK glycoprotein|urea transporter, erythrocyte|urea transporter-B1 20121230 -9606 6564 SLC15A1 RP11-130L10.1 HPECT1|HPEPT1|PEPT1 HGNC:10920|MIM:600544|Ensembl:ENSG00000088386|HPRD:02768|Vega:OTTHUMG00000017255 13 13q32.3 solute carrier family 15 (oligopeptide transporter), member 1 protein-coding SLC15A1 solute carrier family 15 (oligopeptide transporter), member 1 O Caco-2 oligopeptide transporter|intestinal H+/peptide cotransporter|macrophage oligopeptide transporter PEPT1|oligopeptide transporter, small intestine isoform|peptide transporter 1|solute carrier family 15 member 1 20121230 -9606 6565 SLC15A2 - PEPT2 HGNC:10921|MIM:602339|Ensembl:ENSG00000163406|HPRD:09088|Vega:OTTHUMG00000159423 3 3q13.33 solute carrier family 15 (H+/peptide transporter), member 2 protein-coding SLC15A2 solute carrier family 15 (H+/peptide transporter), member 2 O kidney H(+)/peptide cotransporter|oligopeptide transporter, kidney isoform|peptide transporter 2|solute carrier family 15 member 2 20121230 -9606 6566 SLC16A1 RP4-580L15.1 HHF7|MCT|MCT1 HGNC:10922|MIM:600682|Ensembl:ENSG00000155380|HPRD:02816|Vega:OTTHUMG00000012129 1 1p12 solute carrier family 16, member 1 (monocarboxylic acid transporter 1) protein-coding SLC16A1 solute carrier family 16, member 1 (monocarboxylic acid transporter 1) O MCT 1|monocarboxylate transporter 1|solute carrier family 16 (monocarboxylic acid transporters), member 1|solute carrier family 16 member 1 20121230 -9606 6567 SLC16A2 RP11-449M9.1 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT HGNC:10923|MIM:300095|Ensembl:ENSG00000147100|HPRD:02106|Vega:OTTHUMG00000021857 X Xq13.2 solute carrier family 16, member 2 (thyroid hormone transporter) protein-coding SLC16A2 solute carrier family 16, member 2 (thyroid hormone transporter) O X-linked PEST-containing transporter|monocarboxylate transporter 7|monocarboxylate transporter 8 20121230 -9606 6568 SLC17A1 - NAPI-1|NPT-1|NPT1 HGNC:10929|MIM:182308|Ensembl:ENSG00000124568|HPRD:01661|Vega:OTTHUMG00000016297 6 6p22.2 solute carrier family 17 (sodium phosphate), member 1 protein-coding SLC17A1 solute carrier family 17 (sodium phosphate), member 1 O Na(+)/PI cotransporter 1|na/Pi-4|renal Na(+)-dependent phosphate cotransporter 1|renal sodium-dependent phosphate transport protein 1|renal sodium-phosphate transport protein 1|sodium phosphate transporter|sodium-dependent phosphate transport protein 1|sodium/phosphate cotransporter 1|sodium/phosphate type I cotransporter|solute carrier family 17 (vesicular glutamate transporter), member 1|solute carrier family 17 member 1 20121230 -9606 6569 SLC34A1 - FRTS2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2 HGNC:11019|MIM:182309|Ensembl:ENSG00000131183|HPRD:08918|Vega:OTTHUMG00000130857 5 5q35 solute carrier family 34 (sodium phosphate), member 1 protein-coding SLC34A1 solute carrier family 34 (sodium phosphate), member 1 O Na(+)-dependent phosphate cotransporter 2A|Na(+)/Pi cotransporter 2A|Na+-phosphate cotransporter type II|naPi-2a|renal sodium-dependent phosphate transporter|sodium-dependent phosphate transport protein 2A|sodium-phosphate transport protein 2A|sodium/phosphate co-transporter|sodium/phosphate cotransporter 2A|solute carrier family 17 (sodium phosphate), member 2|solute carrier family 34 member 1 20121230 -9606 6570 SLC18A1 - CGAT|VAT1|VMAT1 HGNC:10934|MIM:193002|Ensembl:ENSG00000036565|HPRD:01897|Vega:OTTHUMG00000097017 8 8p21.3 solute carrier family 18 (vesicular monoamine), member 1 protein-coding SLC18A1 solute carrier family 18 (vesicular monoamine), member 1 O chromaffin granule amine transporter|solute carrier family 18 member 1|vesicular amine transporter 1 20121230 -9606 6571 SLC18A2 - SVAT|SVMT|VAT2|VMAT2 HGNC:10935|MIM:193001|Ensembl:ENSG00000165646|HPRD:01896|Vega:OTTHUMG00000019121 10 10q25 solute carrier family 18 (vesicular monoamine), member 2 protein-coding SLC18A2 solute carrier family 18 (vesicular monoamine), member 2 O monoamine neurotransmitter transporter|monoamine transporter|solute carrier family 18 member 2|synaptic vesicular amine transporter|vesicle monoamine transporter type 2|vesicle monoamine/H+ antiporter|vesicular amine transporter 2 20121230 -9606 6572 SLC18A3 - VACHT HGNC:10936|MIM:600336|Ensembl:ENSG00000187714|HPRD:08979|Vega:OTTHUMG00000018196 10 10q11.2 solute carrier family 18 (vesicular acetylcholine), member 3 protein-coding SLC18A3 solute carrier family 18 (vesicular acetylcholine), member 3 O solute carrier family 18 member 3|solute carrier family 18, member 3|vesicular acetylcholine transporter 20121230 -9606 6573 SLC19A1 - CHMD|FOLT|IFC1|REFC|RFC1 HGNC:10937|MIM:600424|Ensembl:ENSG00000173638|HPRD:02691|Vega:OTTHUMG00000090397 21 21q22.3 solute carrier family 19 (folate transporter), member 1 protein-coding SLC19A1 solute carrier family 19 (folate transporter), member 1 O IFC-1|RFC|folate transporter 1|intestinal folate carrier 1|placental folate transporter|reduced folate carrier protein|solute carrier family 19 member 1 20121230 -9606 6574 SLC20A1 - GLVR1|Glvr-1|PIT1|PiT-1 HGNC:10946|MIM:137570|Ensembl:ENSG00000144136|HPRD:08846|Vega:OTTHUMG00000131317 2 2q13 solute carrier family 20 (phosphate transporter), member 1 protein-coding SLC20A1 solute carrier family 20 (phosphate transporter), member 1 O gibbon ape leukemia virus receptor 1|leukemia virus receptor 1 homolog|sodium-dependent phosphate transporter 1|solute carrier family 20 member 1 20121230 -9606 6575 SLC20A2 - GLVR-2|GLVR2|IBGC3|MLVAR|PIT-2|PIT2|RAM1 HGNC:10947|MIM:158378|Ensembl:ENSG00000168575|HPRD:08865|Vega:OTTHUMG00000164169 8 8p11.21 solute carrier family 20 (phosphate transporter), member 2 protein-coding SLC20A2 solute carrier family 20 (phosphate transporter), member 2 O gibbon ape leukemia virus receptor 2|murine leukemia virus, amphotropic, receptor for|sodium-dependent phosphate transporter 2 20121230 -9606 6576 SLC25A1 - CTP|SEA|SLC20A3 HGNC:10979|MIM:190315|Ensembl:ENSG00000100075|HPRD:01832|Vega:OTTHUMG00000150123 22 22q11.21 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 protein-coding SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 O citrate transport protein|solute carrier family 20 (mitochondrial citrate transporter), member 3|tricarboxylate carrier protein|tricarboxylate transport protein, mitochondrial 20121230 -9606 6578 SLCO2A1 - MATR1|OATP2A1|PGT|PHOAR2|SLC21A2 HGNC:10955|MIM:601460|Ensembl:ENSG00000174640|HPRD:03269|Vega:OTTHUMG00000159745 3 3q21 solute carrier organic anion transporter family, member 2A1 protein-coding SLCO2A1 solute carrier organic anion transporter family, member 2A1 O matrin F/G 1|prostaglandin transporter|solute carrier family 21 (prostaglandin transporter), member 2|solute carrier family 21 member 2|solute carrier organic anion transporter family member 2A1 20121230 -9606 6579 SLCO1A2 - OATP|OATP-A|OATP1A2|SLC21A3 HGNC:10956|MIM:602883|Ensembl:ENSG00000084453|HPRD:09112|Vega:OTTHUMG00000156259 12 12p12 solute carrier organic anion transporter family, member 1A2 protein-coding SLCO1A2 solute carrier organic anion transporter family, member 1A2 O OATP-1|organic anion transporting polypeptide A|organic anion-transporting polypeptide 1|sodium-independent organic anion transporter|solute carrier family 21 (organic anion transporter), member 3|solute carrier family 21 member 3|solute carrier organic anion transporter family member 1A2 20121230 -9606 6580 SLC22A1 - HOCT1|OCT1|oct1_cds HGNC:10963|MIM:602607|Ensembl:ENSG00000175003|HPRD:04007|Vega:OTTHUMG00000015947 6 6q25.3 solute carrier family 22 (organic cation transporter), member 1 protein-coding SLC22A1 solute carrier family 22 (organic cation transporter), member 1 O organic cation transporter 1|solute carrier family 22 member 1 20121230 -9606 6581 SLC22A3 RP11-72O9.3 EMT|EMTH|OCT3 HGNC:10967|MIM:604842|Ensembl:ENSG00000146477|HPRD:05328|Vega:OTTHUMG00000015953 6 6q25.3 solute carrier family 22 (extraneuronal monoamine transporter), member 3 protein-coding SLC22A3 solute carrier family 22 (extraneuronal monoamine transporter), member 3 O EMT organic cation transporter 3|extraneuronal monoamine transporter|organic cation transporter 3|solute carrier family 22 member 3 20121230 -9606 6582 SLC22A2 RP11-317M22.2 OCT2 HGNC:10966|MIM:602608|Ensembl:ENSG00000112499|HPRD:04008|Vega:OTTHUMG00000015950 6 6q25.3 solute carrier family 22 (organic cation transporter), member 2 protein-coding SLC22A2 solute carrier family 22 (organic cation transporter), member 2 O organic cation transporter 2|solute carrier family 22 member 2 20121230 -9606 6583 SLC22A4 - OCTN1 HGNC:10968|MIM:604190|Ensembl:ENSG00000197208|HPRD:09171|Vega:OTTHUMG00000059648 5 5q31.1 solute carrier family 22 (organic cation/ergothioneine transporter), member 4 protein-coding SLC22A4 solute carrier family 22 (organic cation/ergothioneine transporter), member 4 O ET transporter|ergothioneine transporter|integral membrane transport protein|organic cation/carnitine transporter 1|solute carrier family 22 member 4 20121230 -9606 6584 SLC22A5 - CDSP|OCTN2|OCTN2VT HGNC:10969|MIM:603377|Ensembl:ENSG00000197375|HPRD:04539|Vega:OTTHUMG00000059634 5 5q23.3 solute carrier family 22 (organic cation/carnitine transporter), member 5 protein-coding SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5 O high-affinity sodium dependent carnitine cotransporter|organic cation/carnitine transporter 2|solute carrier family 22 member 5 20121230 -9606 6585 SLIT1 RP11-175O19.2 MEGF4|SLIL1|SLIT-1|SLIT3 HGNC:11085|MIM:603742|Ensembl:ENSG00000187122|HPRD:04773|Vega:OTTHUMG00000018843 10 10q23.3-q24 slit homolog 1 (Drosophila) protein-coding SLIT1 slit homolog 1 (Drosophila) O multiple EGF-like domains protein 4|multiple epidermal growth factor-like domains protein 4|slit homolog 1 protein 20121230 -9606 6586 SLIT3 UNQ691/PRO1336 MEGF5|SLIL2|SLIT1|Slit-3|slit2 HGNC:11087|MIM:603745|Ensembl:ENSG00000184347|HPRD:04775|Vega:OTTHUMG00000130409 5 5q35 slit homolog 3 (Drosophila) protein-coding SLIT3 slit homolog 3 (Drosophila) O multiple EGF-like domains protein 5|multiple epidermal growth factor-like domains protein 5|slit homolog 3 protein 20121230 -9606 6588 SLN - - HGNC:11089|MIM:602203|Ensembl:ENSG00000170290|HPRD:03729 11 11q22-q23 sarcolipin protein-coding SLN sarcolipin O - 20121230 -9606 6590 SLPI - ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 HGNC:11092|MIM:107285|Ensembl:ENSG00000124107|HPRD:00121|Vega:OTTHUMG00000033075 20 20q12 secretory leukocyte peptidase inhibitor protein-coding SLPI secretory leukocyte peptidase inhibitor O HUSI-1|WAP four-disulfide core domain protein 4|antileukoproteinase|mucus proteinase inhibitor|protease inhibitor WAP4|secretory leukocyte protease inhibitor (antileukoproteinase)|seminal proteinase inhibitor 20121230 -9606 6591 SNAI2 - SLUG|SLUGH1|SNAIL2|WS2D HGNC:11094|MIM:602150|Ensembl:ENSG00000019549|HPRD:03689|Vega:OTTHUMG00000149912 8 8q11 snail homolog 2 (Drosophila) protein-coding SNAI2 snail homolog 2 (Drosophila) O neural crest transcription factor SLUG|protein snail homolog 2|slug (chicken homolog), zinc finger protein|zinc finger protein SNAI2 20121230 -9606 6594 SMARCA1 RP3-353H6.2 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2 HGNC:11097|MIM:300012|Ensembl:ENSG00000102038|HPRD:02055|Vega:OTTHUMG00000022370 X Xq25 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 O ATP-dependent helicase SMARCA1|SNF2-like 1|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1|global transcription activator homologous sequence|nucleosome-remodeling factor subunit SNF2L|probable global transcription activator SNF2L1|sucrose nonfermenting 2-like protein 1 20121230 -9606 6595 SMARCA2 - BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a HGNC:11098|MIM:600014|Ensembl:ENSG00000080503|HPRD:02483|Vega:OTTHUMG00000019445 9 9p22.3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 O ATP-dependent helicase SMARCA2|BAF190B|BRG1-associated factor 190B|SNF2-alpha|SNF2/SWI2-like protein 2|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2|global transcription activator homologous sequence|probable global transcription activator SNF2L2|protein brahma homolog|sucrose nonfermenting 2-like protein 2 20121230 -9606 6596 HLTF - HIP116|HIP116A|HLTF1|RNF80|SMARCA3|SNF2L3|ZBU1 HGNC:11099|MIM:603257|Ensembl:ENSG00000071794|HPRD:04461|Vega:OTTHUMG00000159534 3 3q25.1-q26.1 helicase-like transcription factor protein-coding HLTF helicase-like transcription factor O DNA-binding protein/plasminogen activator inhibitor 1 regulator|DNA-binding protein/plasminogen activator inhibitor-1 regulator|RING finger protein 80|SNF2-like 3|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3|sucrose nonfermenting protein 2-like 3|sucrose nonfermenting-like 3 20121230 -9606 6597 SMARCA4 - BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b HGNC:11100|MIM:603254|Ensembl:ENSG00000127616|HPRD:04459|Vega:OTTHUMG00000169272 19 19p13.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 O ATP-dependent helicase SMARCA4|BRG1-associated factor 190A|BRM/SWI2-related gene 1|SNF2-beta|SNF2-like 4|brahma protein-like 1|global transcription activator homologous sequence|homeotic gene regulator|mitotic growth and transcription activator|nuclear protein GRB1|protein BRG-1|protein brahma homolog 1|sucrose nonfermenting-like 4|transcription activator BRG1 20121230 -9606 6598 SMARCB1 - BAF47|INI1|MRD15|RDT|RTPS1|SNF5|SNF5L1|Sfh1p|Snr1|hSNFS HGNC:11103|MIM:601607|Ensembl:ENSG00000099956|HPRD:03364|Vega:OTTHUMG00000150737 22 22q11.23|22q11 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 protein-coding SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 O BRG1-associated factor 47|SNF5 homolog|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1|hSNF5|integrase interactor 1 protein|malignant rhabdoid tumor suppressor|sucrose nonfermenting, yeast, homolog-like 1 20121230 -9606 6599 SMARCC1 - BAF155|CRACC1|Rsc8|SRG3|SWI3 HGNC:11104|MIM:601732|Ensembl:ENSG00000173473|HPRD:03435|Vega:OTTHUMG00000133519 3 3p21.31 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein-coding SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 O BRG1-associated factor 155|SWI/SNF complex 155 kDa subunit|SWI/SNF complex subunit SMARCC1|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1|chromatin remodeling complex BAF155 subunit|mammalian chromatin remodeling complex BRG1-associated factor 155 20121230 -9606 6601 SMARCC2 - BAF170|CRACC2|Rsc8 HGNC:11105|MIM:601734|Ensembl:ENSG00000139613|HPRD:03437|Vega:OTTHUMG00000170288 12 12q13.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein-coding SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 O BRG1-associated factor 170|SWI/SNF complex 170 kDa subunit|SWI/SNF complex subunit SMARCC2|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 2|SWI3-like protein|chromatin remodeling complex BAF170 subunit|mammalian chromatin remodeling complex BRG1-associated factor 170 20121230 -9606 6602 SMARCD1 - BAF60A|CRACD1|Rsc6p HGNC:11106|MIM:601735|Ensembl:ENSG00000066117|HPRD:03438|Vega:OTTHUMG00000150194 12 12q13-q14 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein-coding SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 O 60 kDa BRG-1/Brm-associated factor subunit A|BRG1-associated factor 60A|SWI/SNF complex 60 kDa subunit A|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1|Swp73-like protein|chromatin remodeling complex BAF60A subunit|mammalian chromatin remodeling complex BRG1-associated factor 60A 20121230 -9606 6603 SMARCD2 PRO2451 BAF60B|CRACD2|Rsc6p HGNC:11107|MIM:601736|Ensembl:ENSG00000108604|HPRD:03439|Vega:OTTHUMG00000179045 17 17q23-q24 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 O 60 kDa BRG-1/Brm-associated factor subunit B|BRG1-associated factor 60B|SWI/SNF complex 60 kDa subunit B|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2|Swp73-like protein|chromatin remodeling complex BAF60B subunit|mammalian chromatin remodeling complex BRG1-associated factor 60B 20121230 -9606 6604 SMARCD3 - BAF60C|CRACD3|Rsc6p HGNC:11108|MIM:601737|Ensembl:ENSG00000082014|HPRD:03440|Vega:OTTHUMG00000157431 7 7q35-q36 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 O 60 kDa BRG-1/Brm-associated factor subunit C|BRG1-associated factor 60C|SWI/SNF complex 60 kDa subunit C|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3|Swp73-like protein|chromatin remodeling complex BAF60C subunit|mammalian chromatin remodeling complex BRG1-associated factor 60C 20121230 -9606 6605 SMARCE1 - BAF57 HGNC:11109|MIM:603111|Ensembl:ENSG00000073584|HPRD:04382|Vega:OTTHUMG00000133367 17 17q21.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 O BRG1-associated factor 57|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin e1|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1|chromatin remodeling complex BRG1-associated factor 57 20121230 -9606 6606 SMN1 - BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541 HGNC:11117|MIM:600354|Ensembl:ENSG00000172062|HPRD:02646|Vega:OTTHUMG00000099361 5 5q13.2 survival of motor neuron 1, telomeric protein-coding SMN1 survival of motor neuron 1, telomeric O component of gems 1|gemin 1|gemin-1|survival motor neuron 1 protein|survival motor neuron protein 20121230 -9606 6607 SMN2 - BCD541|C-BCD541|GEMIN1|SMNC HGNC:11118|MIM:601627|Ensembl:ENSG00000205571|HPRD:09036|Vega:OTTHUMG00000099389 5 5q13.2 survival of motor neuron 2, centromeric protein-coding SMN2 survival of motor neuron 2, centromeric O component of gems 1|gemin-1|survival motor neuron protein 20121230 -9606 6608 SMO - FZD11|Gx|SMOH HGNC:11119|MIM:601500|Ensembl:ENSG00000128602|HPRD:03294|Vega:OTTHUMG00000158421 7 7q32.3 smoothened, frizzled family receptor protein-coding SMO smoothened, frizzled family receptor O frizzled family member 11|protein Gx|seven transmembrane helix receptor|smoothened homolog|smoothened, seven transmembrane spanning receptor 20121230 -9606 6609 SMPD1 - ASM|ASMASE|NPD HGNC:11120|MIM:607608|Ensembl:ENSG00000166311|HPRD:06353|Vega:OTTHUMG00000165453 11 11p15.4-p15.1 sphingomyelin phosphodiesterase 1, acid lysosomal protein-coding SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal O acid sphingomyelinase|sphingomyelin phosphodiesterase 20121230 -9606 6610 SMPD2 RP5-919F19.2 ISC1|NSMASE|NSMASE1 HGNC:11121|MIM:603498|Ensembl:ENSG00000135587|HPRD:04608|Vega:OTTHUMG00000015348 6 6q21 sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) protein-coding SMPD2 sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) O N-SMase|lyso-PAF-PLC|lyso-platelet-activating factor-phospholipase C|neutral sphingomyelinase|sphingomyelin phosphodiesterase 2 20121230 -9606 6611 SMS - MRSR|SPMSY|SRS|SpS HGNC:11123|MIM:300105|Ensembl:ENSG00000102172|HPRD:02115|Vega:OTTHUMG00000021239 X Xp22.1 spermine synthase protein-coding SMS spermine synthase O spermidine aminopropyltransferase 20121230 -9606 6612 SUMO3 - SMT3A|SMT3H1|SUMO-3|Smt3B HGNC:11124|MIM:602231|Ensembl:ENSG00000184900|HPRD:03754|Vega:OTTHUMG00000090256 21 21q22.3 SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) protein-coding SUMO3 SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) O SMT3 homolog 1|SMT3 suppressor of mif two 3 homolog 1|SUMO-2|small ubiquitin-related modifier 3|ubiquitin-like protein SMT3A|ubiquitin-like protein SMT3B 20121230 -9606 6613 SUMO2 - HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A HGNC:11125|MIM:603042|Ensembl:ENSG00000188612|HPRD:04332|Vega:OTTHUMG00000179481 17 17q25.1 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) protein-coding SUMO2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) O SMT3 homolog 2|sentrin 2|small ubiquitin-like modifier 2|small ubiquitin-related modifier 2|ubiquitin-like protein SMT3A|ubiquitin-like protein SMT3B 20121230 -9606 6614 SIGLEC1 - CD169|SIGLEC-1|SN|dJ1009E24.1 HGNC:11127|MIM:600751|Ensembl:ENSG00000088827|HPRD:02854|Vega:OTTHUMG00000031757 20 20p13 sialic acid binding Ig-like lectin 1, sialoadhesin protein-coding SIGLEC1 sialic acid binding Ig-like lectin 1, sialoadhesin O sialic acid-binding Ig-like lectin 1|sialic acid-binding immunoglobulin-like lectin 1|sialoadhesin 20121230 -9606 6615 SNAI1 - SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 HGNC:11128|MIM:604238|Ensembl:ENSG00000124216|HPRD:05025|Vega:OTTHUMG00000033048 20 20q13.2 snail homolog 1 (Drosophila) protein-coding SNAI1 snail homolog 1 (Drosophila) O protein sna|protein snail homolog 1|snail 1 homolog|snail 1 zinc finger protein|snail 1, zinc finger protein|zinc finger protein SNAI1 20121230 -9606 6616 SNAP25 - RIC-4|RIC4|SEC9|SNAP|SNAP-25|bA416N4.2|dJ1068F16.2 HGNC:11132|MIM:600322|Ensembl:ENSG00000132639|HPRD:02637|Vega:OTTHUMG00000031863 20 20p12-p11.2 synaptosomal-associated protein, 25kDa protein-coding SNAP25 synaptosomal-associated protein, 25kDa O SUP|resistance to inhibitors of cholinesterase 4 homolog|super protein|synaptosomal-associated protein 25 20121230 -9606 6617 SNAPC1 - PTFgamma|SNAP43 HGNC:11134|MIM:600591|Ensembl:ENSG00000023608|HPRD:08998|Vega:OTTHUMG00000140343 14 14q22 small nuclear RNA activating complex, polypeptide 1, 43kDa protein-coding SNAPC1 small nuclear RNA activating complex, polypeptide 1, 43kDa O PSE-binding factor subunit gamma|PTF subunit gamma|SNAPc 43 kDa subunit|SNAPc subunit 1|proximal sequence element-binding transcription factor subunit gamma|small nuclear RNA-activating complex polypeptide 1|snRNA-activating protein complex 43 kDa subunit|snRNA-activating protein complex subunit 1 20121230 -9606 6618 SNAPC2 - PTFDELTA|SNAP45 HGNC:11135|MIM:605076|Ensembl:ENSG00000104976|HPRD:05464 19 19p13 small nuclear RNA activating complex, polypeptide 2, 45kDa protein-coding SNAPC2 small nuclear RNA activating complex, polypeptide 2, 45kDa O PSE-binding factor subunit delta|PTF subunit delta|SNAPC 45 kDa subunit|SNAPc subunit 2|proximal sequence element-binding transcription factor subunit delta|small nuclear RNA-activating complex polypeptide 2|snRNA-activating protein complex 45 kDa subunit|snRNA-activating protein complex subunit 2 20121230 -9606 6619 SNAPC3 RP11-307K19.1 PTFbeta|SNAP50 HGNC:11136|MIM:602348|Ensembl:ENSG00000164975|HPRD:03826|Vega:OTTHUMG00000019583 9 9p22.3 small nuclear RNA activating complex, polypeptide 3, 50kDa protein-coding SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa O PSE-binding factor subunit beta|PTF subunit beta|SNAPc 50 kDa subunit|SNAPc subunit 3|proximal sequence element-binding transcription factor subunit beta|small nuclear RNA-activating complex polypeptide 3|snRNA-activating protein complex 50 kDa subunit|snRNA-activating protein complex subunit 3 20121230 -9606 6620 SNCB - - HGNC:11140|MIM:602569|Ensembl:ENSG00000074317|HPRD:03980|Vega:OTTHUMG00000130661 5 5q35 synuclein, beta protein-coding SNCB synuclein, beta O beta-synuclein 20121230 -9606 6621 SNAPC4 - PTFalpha|SNAP190 HGNC:11137|MIM:602777|Ensembl:ENSG00000165684|HPRD:04146|Vega:OTTHUMG00000020929 9 9q34.3 small nuclear RNA activating complex, polypeptide 4, 190kDa protein-coding SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa O PSE-binding factor subunit alpha|PTF subunit alpha|SNAPc 190 kDa subunit|SNAPc subunit 4|proximal sequence element-binding transcription factor subunit alpha|snRNA-activating protein complex 190 kDa subunit|snRNA-activating protein complex subunit 4 20121230 -9606 6622 SNCA - NACP|PARK1|PARK4|PD1 HGNC:11138|MIM:163890|Ensembl:ENSG00000145335|HPRD:01227|Vega:OTTHUMG00000130948 4 4q21 synuclein, alpha (non A4 component of amyloid precursor) protein-coding SNCA synuclein, alpha (non A4 component of amyloid precursor) O alpha-synuclein|non A-beta component of AD amyloid|synuclein alpha-140 20121230 -9606 6623 SNCG - BCSG1|SR HGNC:11141|MIM:602998|Ensembl:ENSG00000173267|HPRD:04297|Vega:OTTHUMG00000018656 10 10q23.2-q23.3 synuclein, gamma (breast cancer-specific protein 1) protein-coding SNCG synuclein, gamma (breast cancer-specific protein 1) O breast cancer-specific gene 1 protein|gamma-synuclein|persyn|synoretin 20121230 -9606 6624 FSCN1 - FAN1|HSN|SNL|p55 HGNC:11148|MIM:602689|Ensembl:ENSG00000075618|HPRD:04068|Vega:OTTHUMG00000090599 7 7p22 fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) protein-coding FSCN1 fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) O 55 kDa actin-bundling protein|fascin|singed-like (fascin homolog, sea urchin) 20121230 -9606 6625 SNRNP70 - RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP HGNC:11150|MIM:180740|Ensembl:ENSG00000104852|HPRD:01617 19 19q13.3 small nuclear ribonucleoprotein 70kDa (U1) protein-coding SNRNP70 small nuclear ribonucleoprotein 70kDa (U1) O U1 small nuclear ribonucleoprotein 70 kDa|U1 snRNP 70 kDa 20121230 -9606 6626 SNRPA - Mud1|U1-A|U1A HGNC:11151|MIM:182285|Ensembl:ENSG00000077312|HPRD:01658 19 19q13.1 small nuclear ribonucleoprotein polypeptide A protein-coding SNRPA small nuclear ribonucleoprotein polypeptide A O U1 small nuclear RNP-specific A|U1 small nuclear ribonucleoprotein A|U1 snRNP A|U1 snRNP-specific protein A 20121230 -9606 6627 SNRPA1 - Lea1 HGNC:11152|MIM:603521|Ensembl:ENSG00000131876|HPRD:04629|Vega:OTTHUMG00000149871 15 15q26.3 small nuclear ribonucleoprotein polypeptide A' protein-coding SNRPA1 small nuclear ribonucleoprotein polypeptide A' O U2 small nuclear ribonucleoprotein A'|U2 small nuclear ribonucleoprotein polypeptide A'|U2 snRNP A' 20121230 -9606 6628 SNRPB - COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B HGNC:11153|MIM:182282|Ensembl:ENSG00000125835|HPRD:01655|Vega:OTTHUMG00000031694 20 20p13 small nuclear ribonucleoprotein polypeptides B and B1 protein-coding SNRPB small nuclear ribonucleoprotein polypeptides B and B1 O B polypeptide of Sm protein|Sm protein B/B'|sm-B/Sm-B'|small nuclear ribonucleoprotein polypeptide B|small nuclear ribonucleoprotein polypeptides B and B'|small nuclear ribonucleoprotein-associated proteins B and B' 20121230 -9606 6629 SNRPB2 - Msl1 HGNC:11155|MIM:603520|Ensembl:ENSG00000125870|HPRD:04628|Vega:OTTHUMG00000031933 20 20p12.1 small nuclear ribonucleoprotein polypeptide B protein-coding SNRPB2 small nuclear ribonucleoprotein polypeptide B O U2 small nuclear ribonucleoprotein B''|U2 snRNP B''|small nuclear ribonucleoprotein polypeptide B2 20121230 -9606 6631 SNRPC RP3-375P9.1 U1C|Yhc1 HGNC:11157|MIM:603522|Ensembl:ENSG00000124562|HPRD:04630|Vega:OTTHUMG00000014555 6 6p21.31 small nuclear ribonucleoprotein polypeptide C protein-coding SNRPC small nuclear ribonucleoprotein polypeptide C O U1 small nuclear RNP specific C|U1 small nuclear ribonucleoprotein C|U1 snRNP C|U1 snRNP protein C 20121230 -9606 6632 SNRPD1 - HsT2456|SMD1|SNRPD|Sm-D1 HGNC:11158|MIM:601063|Ensembl:ENSG00000167088|HPRD:03040|Vega:OTTHUMG00000178934 18 18q11.2 small nuclear ribonucleoprotein D1 polypeptide 16kDa protein-coding SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa O Sm-D autoantigen|small nuclear ribonucleoprotein D1 polypeptide 16kDa pseudogene|small nuclear ribonucleoprotein Sm D1|snRNP core protein D1 20121230 -9606 6633 SNRPD2 - SMD2|SNRPD1|Sm-D2 HGNC:11159|MIM:601061|Ensembl:ENSG00000125743|HPRD:03038|Vega:OTTHUMG00000182130 19 19q13.2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa protein-coding SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa O small nuclear ribonucleoprotein Sm D2|snRNP core protein D2 20121230 -9606 6634 SNRPD3 - SMD3|Sm-D3 HGNC:11160|MIM:601062|Ensembl:ENSG00000100028|HPRD:03039|Vega:OTTHUMG00000150727 22 22q11.23 small nuclear ribonucleoprotein D3 polypeptide 18kDa protein-coding SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 18kDa O small nuclear ribonucleoprotein Sm D3|small nuclear ribonucleoprotein polypeptide D3|snRNP core protein D3 20121230 -9606 6635 SNRPE - B-raf|SME|Sm-E HGNC:11161|MIM:128260|Ensembl:ENSG00000182004|HPRD:00548|Vega:OTTHUMG00000035985 1 1q32 small nuclear ribonucleoprotein polypeptide E protein-coding SNRPE small nuclear ribonucleoprotein polypeptide E O sm protein E|small nuclear ribonucleoprotein E|snRNP-E 20121230 -9606 6636 SNRPF - SMF|Sm-F|snRNP-F HGNC:11162|MIM:603541|Ensembl:ENSG00000139343|HPRD:04645|Vega:OTTHUMG00000170351 12 12q23.1 small nuclear ribonucleoprotein polypeptide F protein-coding SNRPF small nuclear ribonucleoprotein polypeptide F O sm protein F|small nuclear ribonucleoprotein F 20121230 -9606 6637 SNRPG - SMG|Sm-G HGNC:11163|MIM:603542|Ensembl:ENSG00000143977|HPRD:04646|Vega:OTTHUMG00000129670 2 2p13.3 small nuclear ribonucleoprotein polypeptide G protein-coding SNRPG small nuclear ribonucleoprotein polypeptide G O sm protein G|small nuclear ribonucleoprotein G|snRNP-G 20121230 -9606 6638 SNRPN - HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N HGNC:11164|MIM:182279|Ensembl:ENSG00000128739|HPRD:01653|Vega:OTTHUMG00000129180 15 15q11.2 small nuclear ribonucleoprotein polypeptide N protein-coding SNRPN small nuclear ribonucleoprotein polypeptide N O SM protein N|sm protein D|small nuclear ribonucleoprotein-associated protein N|tissue-specific splicing protein 20121230 -9606 6640 SNTA1 - LQT12|SNT1|TACIP1|dJ1187J4.5 HGNC:11167|MIM:601017|Ensembl:ENSG00000101400|HPRD:03009|Vega:OTTHUMG00000032259 20 20q11.2 syntrophin, alpha 1 protein-coding SNTA1 syntrophin, alpha 1 O 59 kDa dystrophin-associated protein A1 acidic component 1|acidic alpha 1 syntrophin|alpha-1-syntrophin|dystrophin-associated protein A1, 59kDa, acidic component|pro-TGF-alpha cytoplasmic domain-interacting protein 1|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)|syntrophin-1 20121230 -9606 6641 SNTB1 - 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 HGNC:11168|MIM:600026|Ensembl:ENSG00000172164|HPRD:02490|Vega:OTTHUMG00000165041 8 8q23-q24 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) O 59 kDa dystrophin-associated protein A1 basic component 1|beta-1-syntrophin|dystrophin-associated protein A1, 59kD, basic component 1|syntrophin-2|tax interaction protein 43 20121230 -9606 6642 SNX1 - HsT17379|VPS5 HGNC:11172|MIM:601272|Ensembl:ENSG00000028528|HPRD:03171|Vega:OTTHUMG00000172436 15 15q22.31 sorting nexin 1 protein-coding SNX1 sorting nexin 1 O sorting nexin 1A|sorting nexin-1 20121230 -9606 6643 SNX2 TRG9 TRG-9 HGNC:11173|MIM:605929|Ensembl:ENSG00000205302|HPRD:09332|Vega:OTTHUMG00000163020 5 5q23 sorting nexin 2 protein-coding SNX2 sorting nexin 2 O sorting nexin-2|transformation-related gene 9 protein 20121230 -9606 6644 SRIP1 - SRIL HGNC:11293 4 4q12 sorcin pseudogene 1 pseudo SRIP1 sorcin pseudogene 1 O - 20121230 -9606 6645 SNTB2 - D16S2531E|EST25263|SNT2B2|SNT3|SNTL HGNC:11169|MIM:600027|Ensembl:ENSG00000168807|HPRD:02491|Vega:OTTHUMG00000137567 16 16q22.1 syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) protein-coding SNTB2 syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) O 59 kDa dystrophin-associated protein A1 basic component 2|beta-2-syntrophin|dystrophin-associated protein A1, 59kD, basic component 2|syntrophin-3 20121230 -9606 6646 SOAT1 RP11-215I23.1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT HGNC:11177|MIM:102642|Ensembl:ENSG00000057252|HPRD:00033|Vega:OTTHUMG00000035253 1 1q25 sterol O-acyltransferase 1 protein-coding SOAT1 sterol O-acyltransferase 1 O acyl-coenzyme A:cholesterol acyltransferase 1|sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 20121230 -9606 6647 SOD1 - ALS|ALS1|IPOA|SOD|hSod1|homodimer HGNC:11179|MIM:147450|Ensembl:ENSG00000142168|HPRD:00937|Vega:OTTHUMG00000084878 21 21q22.11 superoxide dismutase 1, soluble protein-coding SOD1 superoxide dismutase 1, soluble O Cu/Zn superoxide dismutase|SOD, soluble|indophenoloxidase A|superoxide dismutase [Cu-Zn]|superoxide dismutase, cystolic 20121230 -9606 6648 SOD2 RP1-56L9.2 IPOB|MNSOD|MVCD6 HGNC:11180|MIM:147460|Ensembl:ENSG00000112096|HPRD:00938|Vega:OTTHUMG00000015940 6 6q25.3 superoxide dismutase 2, mitochondrial protein-coding SOD2 superoxide dismutase 2, mitochondrial O Mn superoxide dismutase|indophenoloxidase B|manganese-containing superoxide dismutase|mangano-superoxide dismutase|superoxide dismutase [Mn], mitochondrial 20121230 -9606 6649 SOD3 - EC-SOD HGNC:11181|MIM:185490|Ensembl:ENSG00000109610|HPRD:01708|Vega:OTTHUMG00000128565 4 4p15.2 superoxide dismutase 3, extracellular protein-coding SOD3 superoxide dismutase 3, extracellular O extracellular superoxide dismutase [Cu-Zn] 20121230 -9606 6650 SOLH - CAPN15 HGNC:11182|MIM:603267|Ensembl:ENSG00000103326|HPRD:07220|Vega:OTTHUMG00000119059 16 16p13.3 small optic lobes homolog (Drosophila) protein-coding SOLH small optic lobes homolog (Drosophila) O calpain-15 20121230 -9606 6651 SON HSPC310 BASS1|C21orf50|DBP-5|NREBP|SON3 HGNC:11183|MIM:182465|Ensembl:ENSG00000159140|HPRD:01678|Vega:OTTHUMG00000065806 21 21q22.11 SON DNA binding protein protein-coding SON SON DNA binding protein O Bax antagonist selected in Saccharomyces 1|NRE-binding protein|negative regulatory element-binding protein|protein DBP-5|protein SON 20121230 -9606 6652 SORD - SORD1 HGNC:11184|MIM:182500|Ensembl:ENSG00000140263|HPRD:01679|Vega:OTTHUMG00000131265 15 15q15.3 sorbitol dehydrogenase protein-coding SORD sorbitol dehydrogenase O L-iditol 2-dehydrogenase 20121230 -9606 6653 SORL1 - C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 HGNC:11185|MIM:602005|Ensembl:ENSG00000137642|HPRD:03595|Vega:OTTHUMG00000166057 11 11q23.2-q24.2 sortilin-related receptor, L(DLR class) A repeats containing protein-coding SORL1 sortilin-related receptor, L(DLR class) A repeats containing O LDLR relative with 11 ligand-binding repeats|low-density lipoprotein receptor relative with 11 ligand-binding repeats|mosaic protein LR11|sortilin-related receptor|sortilin-related receptor, L(DLR class) A repeats-containing|sorting protein-related receptor containing LDLR class A repeats 20121230 -9606 6654 SOS1 - GF1|GGF1|GINGF|HGF|NS4 HGNC:11187|MIM:182530|Ensembl:ENSG00000115904|HPRD:01681|Vega:OTTHUMG00000102109 2 2p21 son of sevenless homolog 1 (Drosophila) protein-coding SOS1 son of sevenless homolog 1 (Drosophila) O SOS-1|gingival fibromatosis, hereditary, 1|guanine nucleotide exchange factor|son of sevenless homolog 1 20121230 -9606 6655 SOS2 - - HGNC:11188|MIM:601247|Ensembl:ENSG00000100485|HPRD:03149|Vega:OTTHUMG00000140292 14 14q21 son of sevenless homolog 2 (Drosophila) protein-coding SOS2 son of sevenless homolog 2 (Drosophila) O SOS-2|guanine nucleotide exchange factor|guanine nucleotide releasing factor|son of sevenless homolog 2 20121230 -9606 6656 SOX1 - - HGNC:11189|MIM:602148|Ensembl:ENSG00000182968|HPRD:03687|Vega:OTTHUMG00000017362 13 13q34 SRY (sex determining region Y)-box 1 protein-coding SOX1 SRY (sex determining region Y)-box 1 O SRY-related HMG-box gene 1|transcription factor SOX-1 20121230 -9606 6657 SOX2 - ANOP3|MCOPS3 HGNC:11195|MIM:184429|Ensembl:ENSG00000181449|HPRD:08921|Vega:OTTHUMG00000158222 3 3q26.3-q27 SRY (sex determining region Y)-box 2 protein-coding SOX2 SRY (sex determining region Y)-box 2 O SRY-related HMG-box gene 2|transcription factor SOX-2|transcription factor SOX2 20121230 -9606 6658 SOX3 - GHDX|MRGH|PHP|PHPX|SOXB HGNC:11199|MIM:313430|Ensembl:ENSG00000134595|HPRD:02432|Vega:OTTHUMG00000022544 X Xq27.1 SRY (sex determining region Y)-box 3 protein-coding SOX3 SRY (sex determining region Y)-box 3 O transcription factor SOX-3 20121230 -9606 6659 SOX4 - EVI16 HGNC:11200|MIM:184430|Ensembl:ENSG00000124766|HPRD:01695|Vega:OTTHUMG00000016101 6 6p22.3 SRY (sex determining region Y)-box 4 protein-coding SOX4 SRY (sex determining region Y)-box 4 O SRY-related HMG-box gene 4|ecotropic viral integration site 16|transcription factor SOX-4 20121230 -9606 6660 SOX5 - L-SOX5 HGNC:11201|MIM:604975|Ensembl:ENSG00000134532|HPRD:18086|Vega:OTTHUMG00000169026 12 12p12.1 SRY (sex determining region Y)-box 5 protein-coding SOX5 SRY (sex determining region Y)-box 5 O transcription factor SOX-5 20121230 -9606 6661 SOX5P - SOX29 HGNC:11202 8 8q21.2 SRY (sex determining region Y)-box 5 pseudogene pseudo SOX5P SRY (sex determining region Y)-box 5 pseudogene O - 20121230 -9606 6662 SOX9 - CMD1|CMPD1|SRA1 HGNC:11204|MIM:608160|Ensembl:ENSG00000125398|HPRD:06427|Vega:OTTHUMG00000166300 17 17q23 SRY (sex determining region Y)-box 9 protein-coding SOX9 SRY (sex determining region Y)-box 9 O SRY (sex-determining region Y)-box 9 protein|SRY-related HMG-box, gene 9|transcription factor SOX-9 20121230 -9606 6663 SOX10 RP5-1039K5.9 DOM|PCWH|WS2E|WS4|WS4C HGNC:11190|MIM:602229|Ensembl:ENSG00000100146|HPRD:03752|Vega:OTTHUMG00000149913 22 22q13.1 SRY (sex determining region Y)-box 10 protein-coding SOX10 SRY (sex determining region Y)-box 10 O SRY-related HMG-box gene 10|dominant megacolon, mouse, human homolog of|transcription factor SOX-10 20121230 -9606 6664 SOX11 - - HGNC:11191|MIM:600898|Ensembl:ENSG00000176887|HPRD:02940|Vega:OTTHUMG00000090333 2 2p25 SRY (sex determining region Y)-box 11 protein-coding SOX11 SRY (sex determining region Y)-box 11 O SRY (sex-determining region Y)-box 11|SRY-related HMG-box gene 11|transcription factor SOX-11 20121230 -9606 6665 SOX15 - SOX20|SOX26|SOX27 HGNC:11196|MIM:601297|Ensembl:ENSG00000129194|HPRD:03191|Vega:OTTHUMG00000178146 17 17p12.3 SRY (sex determining region Y)-box 15 protein-coding SOX15 SRY (sex determining region Y)-box 15 O SRY (sex determining region Y)-box 20|protein SOX-15 20121230 -9606 6666 SOX12 - SOX22 HGNC:11198|MIM:601947|Ensembl:ENSG00000177732|HPRD:09056|Vega:OTTHUMG00000031623 20 20p13 SRY (sex determining region Y)-box 12 protein-coding SOX12 SRY (sex determining region Y)-box 12 O SOX-22 protein|SRY (sex determining region Y)-box 22|SRY-related HMG-box gene 22|transcription factor SOX-12 20121230 -9606 6667 SP1 - - HGNC:11205|MIM:189906|Ensembl:ENSG00000185591|HPRD:01796|Vega:OTTHUMG00000170047 12 12q13.1 Sp1 transcription factor protein-coding SP1 Sp1 transcription factor O specificity protein 1|transcription factor Sp1 20121230 -9606 6668 SP2 - - HGNC:11207|MIM:601801|Ensembl:ENSG00000167182|HPRD:03481|Vega:OTTHUMG00000150196 17 17q21.32 Sp2 transcription factor protein-coding SP2 Sp2 transcription factor O transcription factor Sp2 20121230 -9606 6670 SP3 - SPR2 HGNC:11208|MIM:601804|Ensembl:ENSG00000172845|HPRD:03483|Vega:OTTHUMG00000132333 2 2q31 Sp3 transcription factor protein-coding SP3 Sp3 transcription factor O GC-binding transcription factor Sp3|specificity protein 3|transcription factor Sp3 20121230 -9606 6671 SP4 - HF1B|SPR-1 HGNC:11209|MIM:600540|Ensembl:ENSG00000105866|HPRD:02764|Vega:OTTHUMG00000094801 7 7p15.3 Sp4 transcription factor protein-coding SP4 Sp4 transcription factor O transcription factor Sp4 20121230 -9606 6672 SP100 - lysp100b HGNC:11206|MIM:604585|Ensembl:ENSG00000067066|HPRD:06844|Vega:OTTHUMG00000133203 2 2q37.1 SP100 nuclear antigen protein-coding SP100 SP100 nuclear antigen O SP100-HMG nuclear autoantigen|nuclear autoantigen Sp-100|nuclear dot-associated Sp100 protein|speckled 100 kDa 20121230 -9606 6674 SPAG1 - HSD-3.8|SP75|TPIS HGNC:11212|MIM:603395|Ensembl:ENSG00000104450|HPRD:04548|Vega:OTTHUMG00000164706 8 8q22.2 sperm associated antigen 1 protein-coding SPAG1 sperm associated antigen 1 O TPR-containing protein involved in spermatogenesis|infertility-related sperm protein Spag-1|sperm-associated antigen 1|tetratricopeptide repeat-containing protein 20121230 -9606 6675 UAP1 - AGX|AGX1|AGX2|SPAG2 HGNC:12457|MIM:602862|Ensembl:ENSG00000117143|HPRD:04178|Vega:OTTHUMG00000034419 1 1q23.3 UDP-N-acteylglucosamine pyrophosphorylase 1 protein-coding UAP1 UDP-N-acteylglucosamine pyrophosphorylase 1 O UDP-N-acetylhexosamine pyrophosphorylase|antigen X|sperm associated antigen 2|sperm-associated antigen 2 20121230 -9606 6676 SPAG4 RP1-309K20.4 CT127|SUN4 HGNC:11214|MIM:603038|Ensembl:ENSG00000061656|HPRD:04330|Vega:OTTHUMG00000032352 20 20q11.21 sperm associated antigen 4 protein-coding SPAG4 sperm associated antigen 4 O SUN domain-containing protein 4|Sad1 and UNC84 domain containing 4|acrosomal protein ACR55|cancer/testis antigen 127|outer dense fiber-associated protein SPAG4|sperm tail protein|sperm-associated antigen 4 protein 20121230 -9606 6677 SPAM1 - HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 HGNC:11217|MIM:600930|Ensembl:ENSG00000106304|HPRD:02958|Vega:OTTHUMG00000157284 7 7q31.3 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) protein-coding SPAM1 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) O hyal-PH20|hyaluronidase PH-20|hyaluronoglucosaminidase PH-20|sperm surface protein PH-20 20121230 -9606 6678 SPARC - ON HGNC:11219|MIM:182120|Ensembl:ENSG00000113140|HPRD:01631|Vega:OTTHUMG00000130122 5 5q31.3-q32 secreted protein, acidic, cysteine-rich (osteonectin) protein-coding SPARC secreted protein, acidic, cysteine-rich (osteonectin) O BM-40|basement-membrane protein 40|cysteine-rich protein|osteonectin|secreted protein acidic and rich in cysteine 20121230 -9606 6682 SPG3B - - HGNC:11232 - - spastic paraplegia 3B unknown SPG3B spastic paraplegia 3B O - 20121208 -9606 6683 SPAST - ADPSP|FSP2|SPG4 HGNC:11233|MIM:604277|Ensembl:ENSG00000021574|HPRD:05044|Vega:OTTHUMG00000128455 2 2p24-p21 spastin protein-coding SPAST spastin O spastic paraplegia 4 (autosomal dominant; spastin)|spastic paraplegia 4 protein 20121230 -9606 6685 SPG5B - - HGNC:11235|MIM:600146 - - spastic paraplegia 5B (autosomal recessive) unknown SPG5B spastic paraplegia 5B (autosomal recessive) O - 20110215 -9606 6687 SPG7 - CAR|CMAR|PGN|SPG5C HGNC:11237|MIM:602783|Ensembl:ENSG00000197912|HPRD:04149|Vega:OTTHUMG00000138046 16 16q24.3 spastic paraplegia 7 (pure and complicated autosomal recessive) protein-coding SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) O cell adhesion regulator|cell matrix adhesion regulator|paraplegin|spastic paraplegia 7 protein 20121230 -9606 6688 SPI1 hCG_25181 OF|PU.1|SFPI1|SPI-1|SPI-A HGNC:11241|MIM:165170|Ensembl:ENSG00000066336|HPRD:01305|Vega:OTTHUMG00000150150 11 11p11.2 spleen focus forming virus (SFFV) proviral integration oncogene spi1 protein-coding SPI1 spleen focus forming virus (SFFV) proviral integration oncogene spi1 O 31 kDa transforming protein|31 kDa-transforming protein|SPI-1 proto-oncogene|hematopoietic transcription factor PU.1|transcription factor PU.1 20121230 -9606 6689 SPIB - SPI-B HGNC:11242|MIM:606802|Ensembl:ENSG00000142539 19 19q13.3-q13.4 Spi-B transcription factor (Spi-1/PU.1 related) protein-coding SPIB Spi-B transcription factor (Spi-1/PU.1 related) O transcription factor Spi-B 20121230 -9606 6690 SPINK1 - PCTT|PSTI|Spink3|TATI|TCP HGNC:11244|MIM:167790|Ensembl:ENSG00000164266|HPRD:01341|Vega:OTTHUMG00000129730 5 5q32 serine peptidase inhibitor, Kazal type 1 protein-coding SPINK1 serine peptidase inhibitor, Kazal type 1 O pancreatic secretory trypsin inhibitor|serine protease inhibitor Kazal-type 1|serine protease inhibitor, Kazal type 1|tumor-associated trypsin inhibitor 20121230 -9606 6691 SPINK2 - HUSI-II HGNC:11245|MIM:605753|Ensembl:ENSG00000128040|HPRD:10422|Vega:OTTHUMG00000128769 4 4q12 serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) protein-coding SPINK2 serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) O epididymis tissue protein Li 172|serine protease inhibitor Kazal-type 2 20121230 -9606 6692 SPINT1 UNQ223/PRO256 HAI|HAI1|MANSC2 HGNC:11246|MIM:605123|Ensembl:ENSG00000166145|HPRD:05494|Vega:OTTHUMG00000130068 15 15q15.1 serine peptidase inhibitor, Kunitz type 1 protein-coding SPINT1 serine peptidase inhibitor, Kunitz type 1 O HAI-1|hepatocyte growth factor activator inhibitor type 1|kunitz-type protease inhibitor 1|serine protease inhibitor, Kunitz type 1 20121230 -9606 6693 SPN - CD43|GALGP|GPL115|LSN HGNC:11249|MIM:182160|Ensembl:ENSG00000197471|HPRD:06770|Vega:OTTHUMG00000097765 16 16p11.2 sialophorin protein-coding SPN sialophorin O galactoglycoprotein|leukocyte sialoglycoprotein|leukosialin|sialophorin (gpL115, leukosialin, CD43) 20121230 -9606 6694 SPP2 - SPP-24|SPP24 HGNC:11256|MIM:602637|Ensembl:ENSG00000072080|HPRD:04029|Vega:OTTHUMG00000059208 2 2q37.1 secreted phosphoprotein 2, 24kDa protein-coding SPP2 secreted phosphoprotein 2, 24kDa O secreted phosphoprotein 24 20121230 -9606 6695 SPOCK1 - SPOCK|TESTICAN|TIC1 HGNC:11251|MIM:602264|Ensembl:ENSG00000152377|HPRD:11887|Vega:OTTHUMG00000129157 5 5q31.2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 O testican-1 20121230 -9606 6696 SPP1 PSEC0156 BNSP|BSPI|ETA-1|OPN HGNC:11255|MIM:166490|Ensembl:ENSG00000118785|HPRD:01325|Vega:OTTHUMG00000130599 4 4q22.1 secreted phosphoprotein 1 protein-coding SPP1 secreted phosphoprotein 1 O SPP1/CALPHA1 fusion|early T-lymphocyte activation 1|nephropontin|osteopontin|osteopontin/immunoglobulin alpha 1 heavy chain constant region fusion protein|secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)|urinary stone protein|uropontin 20121230 -9606 6697 SPR - SDR38C1 HGNC:11257|MIM:182125|Ensembl:ENSG00000116096|HPRD:01632|Vega:OTTHUMG00000129777 2 2p14-p12 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) protein-coding SPR sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) O sepiapterin reductase|short chain dehydrogenase/reductase family 38C, member 1 20121230 -9606 6698 SPRR1A - SPRK HGNC:11259|MIM:182265|Ensembl:ENSG00000169474|HPRD:01647 1 1q21-q22 small proline-rich protein 1A protein-coding SPRR1A small proline-rich protein 1A O 19 kDa pancornulin|SPR-IA|cornifin A|cornifin-A|small proline-rich protein IA 20121230 -9606 6699 SPRR1B - CORNIFIN|GADD33|SPRR1 HGNC:11260|MIM:182266|Ensembl:ENSG00000169469|HPRD:01648|Vega:OTTHUMG00000013869 1 1q21-q22 small proline-rich protein 1B protein-coding SPRR1B small proline-rich protein 1B O 14.9 kDa pancornulin|SPR-IB|cornifin B|cornifin-B|small proline-rich protein IB 20121230 -9606 6700 SPRR2A - - HGNC:11261|MIM:182267|Ensembl:ENSG00000241794|HPRD:01649|Vega:OTTHUMG00000014395 1 1q21-q22 small proline-rich protein 2A protein-coding SPRR2A small proline-rich protein 2A O 2-1|SPR-2A 20121230 -9606 6701 SPRR2B - - HGNC:11262|MIM:182268|Ensembl:ENSG00000196805|Vega:OTTHUMG00000013863 1 1q21-q22 small proline-rich protein 2B protein-coding SPRR2B small proline-rich protein 2B O SPR-2B 20121230 -9606 6702 SPRR2C - - HGNC:11263|MIM:182269|HPRD:01651 1 1q21-q22 small proline-rich protein 2C (pseudogene) pseudo SPRR2C small proline-rich protein 2C (pseudogene) O small proline-rich protein 2C 20121230 -9606 6703 SPRR2D - - HGNC:11264|Ensembl:ENSG00000163216|HPRD:01650|Vega:OTTHUMG00000014396 1 1q21-q22 small proline-rich protein 2D protein-coding SPRR2D small proline-rich protein 2D O SPR-2D|SPR-II|small proline-rich protein II 20121230 -9606 6704 SPRR2E - - HGNC:11265|Ensembl:ENSG00000203785|Vega:OTTHUMG00000014397 1 1q21-q22 small proline-rich protein 2E protein-coding SPRR2E small proline-rich protein 2E O SPR-2E|SPR-II|small proline-rich protein II 20121230 -9606 6705 SPRR2F - - HGNC:11266|Ensembl:ENSG00000244094|HPRD:18699|Vega:OTTHUMG00000014398 1 1q21-q22 small proline-rich protein 2F protein-coding SPRR2F small proline-rich protein 2F O SPR-2F 20121230 -9606 6706 SPRR2G - - HGNC:11267|Ensembl:ENSG00000159516|HPRD:18500|Vega:OTTHUMG00000014399 1 1q21-q22 small proline-rich protein 2G protein-coding SPRR2G small proline-rich protein 2G O SPR-2G 20121230 -9606 6707 SPRR3 - - HGNC:11268|MIM:182271|Ensembl:ENSG00000163209|HPRD:01652|Vega:OTTHUMG00000013872 1 1q21-q22 small proline-rich protein 3 protein-coding SPRR3 small proline-rich protein 3 O 22 kDa pancornulin|cornifin beta|esophagin 20121230 -9606 6708 SPTA1 - EL2|HPP|HS3|SPH3|SPTA HGNC:11272|MIM:182860|Ensembl:ENSG00000163554|HPRD:01685|Vega:OTTHUMG00000019636 1 1q21 spectrin, alpha, erythrocytic 1 (elliptocytosis 2) protein-coding SPTA1 spectrin, alpha, erythrocytic 1 (elliptocytosis 2) O alpha-I spectrin|erythroid alpha-spectrin|spectrin alpha chain, erythrocyte|spectrin alpha chain, erythrocytic 1 20121230 -9606 6709 SPTAN1 - EIEE5|NEAS|SPTA2 HGNC:11273|MIM:182810|Ensembl:ENSG00000197694|HPRD:01684|Vega:OTTHUMG00000020754 9 9q34.11 spectrin, alpha, non-erythrocytic 1 protein-coding SPTAN1 spectrin, alpha, non-erythrocytic 1 O alpha-II spectrin|alpha-fodrin|fodrin alpha chain|spectrin alpha chain, non-erythrocytic 1|spectrin, non-erythroid alpha chain|spectrin, non-erythroid alpha subunit 20121230 -9606 6710 SPTB - EL3|HS2|HSPTB1|SPH2 HGNC:11274|MIM:182870|Ensembl:ENSG00000070182|HPRD:01686|Vega:OTTHUMG00000171550 14 14q23-q24.2 spectrin, beta, erythrocytic protein-coding SPTB spectrin, beta, erythrocytic O beta-I spectrin|membrane cytoskeletal protein|spectrin beta chain, erythrocyte|spectrin beta chain, erythrocytic 20121230 -9606 6711 SPTBN1 - ELF|SPTB2|betaSpII HGNC:11275|MIM:182790|Ensembl:ENSG00000115306|HPRD:01683|Vega:OTTHUMG00000133746 2 2p21 spectrin, beta, non-erythrocytic 1 protein-coding SPTBN1 spectrin, beta, non-erythrocytic 1 O beta-G spectrin|beta-II spectrin|beta-fodrin|beta-spectrin 2|beta-spectrin II|embryonic liver beta-fodrin|fodrin beta chain|spectrin beta chain, brain 1|spectrin beta chain, non-erythrocytic 1|spectrin, non-erythroid beta chain 1 20121230 -9606 6712 SPTBN2 - GTRAP41|SCA5 HGNC:11276|MIM:604985|Ensembl:ENSG00000173898|HPRD:05404|Vega:OTTHUMG00000167262 11 11q13 spectrin, beta, non-erythrocytic 2 protein-coding SPTBN2 spectrin, beta, non-erythrocytic 2 O beta-III spectrin|glutamate transporter EAAT4-associated protein 41|spectrin beta chain, brain 2|spectrin beta chain, non-erythrocytic 2|spectrin, non-erythroid beta chain 2|spinocerebellar ataxia 5 protein 20121230 -9606 6713 SQLE - - HGNC:11279|MIM:602019|Ensembl:ENSG00000104549|HPRD:11802|Vega:OTTHUMG00000164990 8 8q24.1 squalene epoxidase protein-coding SQLE squalene epoxidase O SE|squalene monooxygenase 20121230 -9606 6714 SRC RP5-823N20.1 ASV|SRC1|c-SRC|p60-Src HGNC:11283|MIM:190090|Ensembl:ENSG00000197122|HPRD:01819|Vega:OTTHUMG00000032417 20 20q12-q13 v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) protein-coding SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) O proto-oncogene c-Src|proto-oncogene tyrosine-protein kinase Src|protooncogene SRC, Rous sarcoma|tyrosine kinase pp60c-src|tyrosine-protein kinase SRC-1 20121230 -9606 6715 SRD5A1 - S5AR 1 HGNC:11284|MIM:184753|Ensembl:ENSG00000145545|HPRD:01699|Vega:OTTHUMG00000090456 5 5p15 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) protein-coding SRD5A1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) O 3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1|3-oxo-5-alpha-steroid 4-dehydrogenase 1|5-alpha reductase|SR type 1|steroid 5-alpha-reductase 1|steroid 5-alpha-reductase type I 20121230 -9606 6716 SRD5A2 - - HGNC:11285|MIM:607306|HPRD:07390 2 2p23 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) protein-coding SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) O 3-oxo-5-alpha-steroid 4-dehydrogenase 2|5 alpha-SR2|S5AR 2|SR type 2|steroid 5-alpha-reductase 2|type II 5-alpha reductase 20121230 -9606 6717 SRI - CP-22|CP22|SCN|V19 HGNC:11292|MIM:182520|Ensembl:ENSG00000075142|HPRD:01680|Vega:OTTHUMG00000157267 7 7q21.1 sorcin protein-coding SRI sorcin O 22 kDa protein|H_RG167B05.1|calcium binding protein amplified in mutlidrug-resistant cells 20121230 -9606 6718 AKR1D1 - 3o5bred|CBAS2|SRD5B1 HGNC:388|MIM:604741|Ensembl:ENSG00000122787|HPRD:07263|Vega:OTTHUMG00000155787 7 7q32-q33 aldo-keto reductase family 1, member D1 protein-coding AKR1D1 aldo-keto reductase family 1, member D1 O 3-oxo-5-beta-steroid 4-dehydrogenase|delta 4-3-ketosteroid-5-beta-reductase|delta(4)-3-ketosteroid 5-beta-reductase|delta(4)-3-oxosteroid 5-beta-reductase|steroid-5-beta-reductase, beta polypeptide 1 (3-oxo-5 beta-steroid delta 4-dehydrogenase beta 1) 20121230 -9606 6719 SRD5A1P1 - SRD5AP1 HGNC:11286 X Xq24-qter steroid-5-alpha-reductase, alpha polypeptide 1 pseudogene 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha pseudogene) pseudo SRD5A1P1 steroid-5-alpha-reductase, alpha polypeptide 1 pseudogene 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha pseudogene) O - 20121230 -9606 6720 SREBF1 - SREBP-1c|SREBP1|bHLHd1 HGNC:11289|MIM:184756|Ensembl:ENSG00000072310|HPRD:01701|Vega:OTTHUMG00000059313 17 17p11.2 sterol regulatory element binding transcription factor 1 protein-coding SREBF1 sterol regulatory element binding transcription factor 1 O SREBP-1|class D basic helix-loop-helix protein 1|sterol regulatory element-binding protein 1 20121230 -9606 6721 SREBF2 CTA-250D10.14-005 SREBP2|bHLHd2 HGNC:11290|MIM:600481|Ensembl:ENSG00000198911|HPRD:02726|Vega:OTTHUMG00000151261 22 22q13 sterol regulatory element binding transcription factor 2 protein-coding SREBF2 sterol regulatory element binding transcription factor 2 O SREBP-2|class D basic helix-loop-helix protein 2|sterol regulatory element-binding protein 2|sterol regulatory element-binding transcription factor 2 20121230 -9606 6722 SRF - MCM1 HGNC:11291|MIM:600589|Ensembl:ENSG00000112658|HPRD:02788|Vega:OTTHUMG00000014722 6 6p21.1 serum response factor (c-fos serum response element-binding transcription factor) protein-coding SRF serum response factor (c-fos serum response element-binding transcription factor) O serum response factor 20121230 -9606 6723 SRM - PAPT|SPDSY|SPS1|SRML1 HGNC:11296|MIM:182891|Ensembl:ENSG00000116649|HPRD:01692|Vega:OTTHUMG00000002119 1 1p36-p22 spermidine synthase protein-coding SRM spermidine synthase O putrescine aminopropyltransferase|spermidine synthase-1 20121230 -9606 6725 SRMS - C20orf148|SRM|dJ697K14.1 HGNC:11298|Ensembl:ENSG00000125508|HPRD:10250|Vega:OTTHUMG00000032977 20 - src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites protein-coding SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites O tyrosine-protein kinase Srms 20121230 -9606 6726 SRP9 - ALURBP HGNC:11304|MIM:600707|Ensembl:ENSG00000143742|HPRD:02830|Vega:OTTHUMG00000037738 1 1q42.12 signal recognition particle 9kDa protein-coding SRP9 signal recognition particle 9kDa O signal recognition particle 9 kDa protein 20121230 -9606 6727 SRP14 - ALURBP HGNC:11299|MIM:600708|Ensembl:ENSG00000140319|HPRD:02831|Vega:OTTHUMG00000172391 15 15q22 signal recognition particle 14kDa (homologous Alu RNA binding protein) protein-coding SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) O 18 kDa Alu RNA-binding protein|signal recognition particle 14 kDa protein 20121230 -9606 6728 SRP19 - - HGNC:11300|MIM:182175|Ensembl:ENSG00000153037|HPRD:01644|Vega:OTTHUMG00000128805 5 5q21-q22 signal recognition particle 19kDa protein-coding SRP19 signal recognition particle 19kDa O signal recognition particle 19 kDa protein 20121230 -9606 6729 SRP54 - - HGNC:11301|MIM:604857|Ensembl:ENSG00000100883|HPRD:05330|Vega:OTTHUMG00000140214 14 14q13.2 signal recognition particle 54kDa protein-coding SRP54 signal recognition particle 54kDa O signal recognition particle 54 kDa protein 20121230 -9606 6730 SRP68 - - HGNC:11302|MIM:604858|Ensembl:ENSG00000167881|HPRD:05331|Vega:OTTHUMG00000180054 17 17q25.1 signal recognition particle 68kDa protein-coding SRP68 signal recognition particle 68kDa O signal recognition particle 68 kDa protein 20121230 -9606 6731 SRP72 - BMFF HGNC:11303|MIM:602122|Ensembl:ENSG00000174780|HPRD:03671|Vega:OTTHUMG00000128843 4 4q11 signal recognition particle 72kDa protein-coding SRP72 signal recognition particle 72kDa O signal recognition particle 72 kDa protein 20121230 -9606 6732 SRPK1 RP3-422H11.1 SFRSK1 HGNC:11305|MIM:601939|Ensembl:ENSG00000096063|HPRD:15992|Vega:OTTHUMG00000014583 6 6p21.31 SRSF protein kinase 1 protein-coding SRPK1 SRSF protein kinase 1 O SFRS protein kinase 1|SR-protein-specific kinase 1|serine/arginine-rich splicing factor kinase 1|serine/threonine-protein kinase SRPK1 20121230 -9606 6733 SRPK2 - SFRSK2 HGNC:11306|MIM:602980|Ensembl:ENSG00000135250|HPRD:04280|Vega:OTTHUMG00000157405 7 7q22-q31.1 SRSF protein kinase 2 protein-coding SRPK2 SRSF protein kinase 2 O H_RG152G17.1a|H_RG152G17.1b|SFRS protein kinase 2|SR protein kinase 2|SR-protein-specific kinase 2|WUGSC:H_RG152G17.1a|serine kinase SRPK2|serine/arginine-rich protein-specific kinase 2|serine/arginine-rich splicing factor kinase 2|serine/threonine-protein kinase SRPK2 20121230 -9606 6734 SRPR - DP|Sralpha HGNC:11307|MIM:182180|Ensembl:ENSG00000182934|HPRD:01645|Vega:OTTHUMG00000165826 11 11q24.2 signal recognition particle receptor (docking protein) protein-coding SRPR signal recognition particle receptor (docking protein) O DP-alpha|SR-alpha|SRP-alpha|docking protein alpha|signal recognition particle receptor subunit alpha 20121230 -9606 6736 SRY - SRXX1|SRXY1|TDF|TDY HGNC:11311|MIM:480000|HPRD:08364 Y Yp11.3 sex determining region Y protein-coding SRY sex determining region Y O essential protein for sex determination in human males|sex determining region protein|sex-determining region Y protein|sex-determining region on Y|testis-determining factor 20121230 -9606 6737 TRIM21 - RNF81|RO52|SSA|SSA1 HGNC:11312|MIM:109092|Ensembl:ENSG00000132109|HPRD:00170|Vega:OTTHUMG00000165701 11 11p15.5 tripartite motif containing 21 protein-coding TRIM21 tripartite motif containing 21 O 52 kDa Ro protein|52 kDa ribonucleoprotein autoantigen Ro/SS-A|E3 ubiquitin-protein ligase TRIM21|RING finger protein 81|SS-A|Sicca syndrome antigen A|Sjogren syndrome antigen A1 (52kDa, ribonucleoprotein autoantigen SS-A/Ro)|ro(SS-A)|sjoegren syndrome type A antigen|tripartite motif-containing 21|tripartite motif-containing protein 21 20121230 -9606 6738 TROVE2 RP11-101E13.3 RO60|RORNP|SSA2 HGNC:11313|MIM:600063|Ensembl:ENSG00000116747|HPRD:15964|Vega:OTTHUMG00000035675 1 1q31 TROVE domain family, member 2 protein-coding TROVE2 TROVE domain family, member 2 O 60 kDa SS-A/Ro ribonucleoprotein|60 kDa ribonucleoprotein Ro|Sjogren syndrome antigen A2 (60kD, ribonucleoprotein autoantigen SS-A/Ro)|gastric cancer multi-drug resistance protein|sjoegren syndrome type A antigen 20121230 -9606 6739 SSAV1 - GLV MIM:182090 18 18q12.3 simian sarcoma-associated virus 1/gibbon ape leukemia virus-related endogenous retroviral element 1 unknown - - - - 20100624 -9606 6741 SSB - LARP3|La HGNC:11316|MIM:109090|Ensembl:ENSG00000138385|HPRD:00168|Vega:OTTHUMG00000132212 2 2q31.1 Sjogren syndrome antigen B (autoantigen La) protein-coding SSB Sjogren syndrome antigen B (autoantigen La) O La ribonucleoprotein domain family, member 3|SS-B|SS-B/La protein|autoantigen La|la autoantigen|lupus La antigen|lupus La protein|sjoegren syndrome type B antigen 20121230 -9606 6742 SSBP1 - Mt-SSB|SOSS-B1|SSBP|mtSSB HGNC:11317|MIM:600439|Ensembl:ENSG00000106028|HPRD:02703|Vega:OTTHUMG00000157572 7 7q34 single-stranded DNA binding protein 1, mitochondrial protein-coding SSBP1 single-stranded DNA binding protein 1, mitochondrial O PWP1-interacting protein 17|single-stranded DNA-binding protein, mitochondrial 20121230 -9606 6744 SSFA2 - CS-1|CS1|KRAP|SPAG13 HGNC:11319|MIM:118990|Ensembl:ENSG00000138434|HPRD:00353|Vega:OTTHUMG00000132584 2 2q31.3 sperm specific antigen 2 protein-coding SSFA2 sperm specific antigen 2 O KRAS-induced actin-interacting protein|cleavage signal-1 protein|ki-ras-induced actin-interacting protein|sperm associated antigen 13|sperm-specific antigen 2 20121230 -9606 6745 SSR1 PSEC0262 TRAPA HGNC:11323|MIM:600868|Ensembl:ENSG00000124783|HPRD:02924|Vega:OTTHUMG00000014202 6 6p24.3 signal sequence receptor, alpha protein-coding SSR1 signal sequence receptor, alpha O SSR alpha subunit|SSR-alpha|TRAP alpha|TRAP-alpha|signal sequence receptor subunit alpha|translocon-associated protein alpha subunit|translocon-associated protein subunit alpha 20121230 -9606 6746 SSR2 HSD25 TLAP|TRAP-BETA|TRAPB HGNC:11324|MIM:600867|Ensembl:ENSG00000163479|HPRD:02923|Vega:OTTHUMG00000017456 1 1q21-q23 signal sequence receptor, beta (translocon-associated protein beta) protein-coding SSR2 signal sequence receptor, beta (translocon-associated protein beta) O SSR-beta|signal sequence receptor subunit beta|translocon-associated protein beta|translocon-associated protein subunit beta 20121230 -9606 6747 SSR3 - TRAPG HGNC:11325|MIM:606213|Ensembl:ENSG00000114850|HPRD:16206|Vega:OTTHUMG00000158632 3 3q25.31 signal sequence receptor, gamma (translocon-associated protein gamma) protein-coding SSR3 signal sequence receptor, gamma (translocon-associated protein gamma) O SSR gamma|SSR-gamma|TRAP-complex gamma subunit|TRAP-gamma|signal sequence receptor subunit gamma|translocon-associated protein gamma subunit|translocon-associated protein subunit gamma 20121230 -9606 6748 SSR4 - TRAPD HGNC:11326|MIM:300090|Ensembl:ENSG00000180879|HPRD:02101|Vega:OTTHUMG00000024212 X Xq28 signal sequence receptor, delta protein-coding SSR4 signal sequence receptor, delta O SSR-delta|TRAP-delta|signal sequence receptor subunit delta|translocon-associated protein delta|translocon-associated protein subunit delta 20121230 -9606 6749 SSRP1 - FACT|FACT80|T160 HGNC:11327|MIM:604328|Ensembl:ENSG00000149136|HPRD:05061|Vega:OTTHUMG00000167024 11 11q12 structure specific recognition protein 1 protein-coding SSRP1 structure specific recognition protein 1 O FACT 80 kDa subunit|FACT complex subunit SSRP1|FACTp80|chromatin-specific transcription elongation factor 80 kDa subunit|cisplatin-DNA SSRP|facilitates chromatin remodeling 80 kDa subunit|facilitates chromatin transcription complex 80 kDa subunit|facilitates chromatin transcription complex subunit SSRP1|hSSRP1|high mobility group box|recombination signal sequence recognition protein 1|structure-specific recognition protein 1 20121230 -9606 6750 SST - SMST HGNC:11329|MIM:182450|Ensembl:ENSG00000157005|HPRD:08920|Vega:OTTHUMG00000156462 3 3q28 somatostatin protein-coding SST somatostatin O growth hormone release-inhibiting factor|somatostatin-14|somatostatin-28 20121230 -9606 6751 SSTR1 - SRIF-2|SS-1-R|SS1-R|SS1R HGNC:11330|MIM:182451|Ensembl:ENSG00000139874|HPRD:01673|Vega:OTTHUMG00000140249 14 14q13 somatostatin receptor 1 protein-coding SSTR1 somatostatin receptor 1 O somatostatin receptor type 1 20121230 -9606 6752 SSTR2 - - HGNC:11331|MIM:182452|Ensembl:ENSG00000180616|HPRD:01674|Vega:OTTHUMG00000178343 17 17q24 somatostatin receptor 2 protein-coding SSTR2 somatostatin receptor 2 O SRIF-1|SS2R|somatostatin receptor type 2 20121230 -9606 6753 SSTR3 - - HGNC:11332|MIM:182453|Ensembl:ENSG00000183473|HPRD:01675|Vega:OTTHUMG00000150537 22 22q13.1 somatostatin receptor 3 protein-coding SSTR3 somatostatin receptor 3 O SS-3-R|SS3-R|SS3R|SSR-28|somatostatin receptor type 3 20121230 -9606 6754 SSTR4 - SS-4-R|SS4-R|SS4R HGNC:11333|MIM:182454|Ensembl:ENSG00000132671|HPRD:01676|Vega:OTTHUMG00000032054 20 20p11.2 somatostatin receptor 4 protein-coding SSTR4 somatostatin receptor 4 O G-protein coupled receptor|somatostatin receptor type 4 20121230 -9606 6755 SSTR5 - SS-5-R HGNC:11334|MIM:182455|Ensembl:ENSG00000162009|HPRD:01677|Vega:OTTHUMG00000047842 16 16p13.3 somatostatin receptor 5 protein-coding SSTR5 somatostatin receptor 5 O somatostatin receptor subtype 5|somatostatin receptor type 5 20121230 -9606 6756 SSX1 RP11-552E4.1 CT5.1|SSRC HGNC:11335|MIM:312820|Ensembl:ENSG00000126752|HPRD:02428|Vega:OTTHUMG00000021488 X Xp11.23 synovial sarcoma, X breakpoint 1 protein-coding SSX1 synovial sarcoma, X breakpoint 1 O cancer/testis antigen 5.1|cancer/testis antigen family 5, member 1|protein SSX1|sarcoma, synovial, X-chromosome-related 1 20121230 -9606 6757 SSX2 RP11-552J9.2 CT5.2a|HD21|HOM-MEL-40|SSX HGNC:11336|MIM:300192|Ensembl:ENSG00000241476|HPRD:02180|Vega:OTTHUMG00000022697 X Xp11.22 synovial sarcoma, X breakpoint 2 protein-coding SSX2 synovial sarcoma, X breakpoint 2 O CT5.2|cancer/testis antigen 5.2|cancer/testis antigen family 5, member 2a|protein SSX2|sarcoma, synovial, X-chromosome-related 2|synovial sarcoma, X breakpoint 2B|tumor antigen HOM-MEL-40 20121230 -9606 6758 SSX5 RP11-38O23.8 - HGNC:11339|MIM:300327|Ensembl:ENSG00000165583|HPRD:02267|Vega:OTTHUMG00000021471 X Xp11.23 synovial sarcoma, X breakpoint 5 protein-coding SSX5 synovial sarcoma, X breakpoint 5 O protein SSX5 20121230 -9606 6759 SSX4 RP11-344N17.14-001 CT5.4 HGNC:11338|MIM:300326|Ensembl:ENSG00000204645|HPRD:02266|Vega:OTTHUMG00000022698 X Xp11.23 synovial sarcoma, X breakpoint 4 protein-coding SSX4 synovial sarcoma, X breakpoint 4 O cancer/testis antigen 5.4|protein SSX4 20121230 -9606 6760 SS18 - SSXT|SYT HGNC:11340|MIM:600192|Ensembl:ENSG00000141380|HPRD:02559|Vega:OTTHUMG00000179425 18 18q11.2 synovial sarcoma translocation, chromosome 18 protein-coding SS18 synovial sarcoma translocation, chromosome 18 O protein SSXT|synovial sarcoma translocated to X chromosome protein|synovial sarcoma, translocated to X chromosome 20121230 -9606 6761 ST2 - - HGNC:11347|MIM:185440 11 11p14.3-p12 suppression of tumorigenicity 2 other ST2 suppression of tumorigenicity 2 O - 20120909 -9606 6762 ST3 - CCTS|TSHL HGNC:11348|MIM:191181 11 11q13-q23 suppression of tumorigenicity 3 unknown ST3 suppression of tumorigenicity 3 O - 20121209 -9606 6764 ST5 - DENND2B|HTS1|p126 HGNC:11350|MIM:140750|Ensembl:ENSG00000166444|HPRD:00780|Vega:OTTHUMG00000165835 11 11p15 suppression of tumorigenicity 5 protein-coding ST5 suppression of tumorigenicity 5 O DENN/MADD domain containing 2B|heLa tumor suppression 1|suppression of tumorigenicity 5 protein 20121230 -9606 6765 ST8 - OVC|OVCS HGNC:11352|MIM:167000 6 6q25-q27 suppression of tumorigenicity 8 (ovarian) unknown ST8 suppression of tumorigenicity 8 (ovarian) O - 20120622 -9606 6767 ST13 RP3-408N23.5 AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6 HGNC:11343|MIM:606796|Ensembl:ENSG00000100380|HPRD:08426|Vega:OTTHUMG00000151201 22 22q13.2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) protein-coding ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) O Hsp70-interacting protein|aging-associated protein 2|heat shock 70kD protein binding protein|hsc70-interacting protein|progesterone receptor-associated p48 protein|putative tumor suppressor ST13|renal carcinoma antigen NY-REN-33|suppression of tumorigenicity 13 protein 20121230 -9606 6768 ST14 - HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 HGNC:11344|MIM:606797|Ensembl:ENSG00000149418|HPRD:06005|Vega:OTTHUMG00000165768 11 11q24-q25 suppression of tumorigenicity 14 (colon carcinoma) protein-coding ST14 suppression of tumorigenicity 14 (colon carcinoma) O membrane-type serine protease 1|prostamin|serine protease 14|serine protease TADG-15|suppression of tumorigenicity 14 (colon carcinoma, matriptase, epithin)|suppressor of tumorigenicity 14 protein|tumor associated differentially expressed gene 15 protein|tumor-associated differentially-expressed gene 15 protein 20121230 -9606 6769 STAC - STAC1 HGNC:11353|MIM:602317|Ensembl:ENSG00000144681|HPRD:11890|Vega:OTTHUMG00000130798 3 3p22.3 SH3 and cysteine rich domain protein-coding STAC SH3 and cysteine rich domain O SH3 and cysteine-rich domain-containing protein|SRC homology 3 and cysteine-rich domain-containing protein|src homology three (SH3) and cysteine rich domain 20121230 -9606 6770 STAR - STARD1 HGNC:11359|MIM:600617|Ensembl:ENSG00000147465|HPRD:02794|Vega:OTTHUMG00000164058 8 8p11.2 steroidogenic acute regulatory protein protein-coding STAR steroidogenic acute regulatory protein O START domain containing 1|START domain-containing protein 1|StAR-related lipid transfer (START) domain containing 1|cholesterol trafficker|mitochondrial steroid acute regulatory protein|steroid acute regulatory protein|steroidogenic acute regulator|steroidogenic acute regulatory protein, mitochondrial 20121230 -9606 6771 STARP1 - STARD1P1 HGNC:11360 13 13q21.32 steroidogenic acute regulatory protein pseudogene 1 pseudo STARP1 steroidogenic acute regulatory protein pseudogene 1 O - 20121230 -9606 6772 STAT1 - CANDF7|ISGF-3|STAT91 HGNC:11362|MIM:600555|Ensembl:ENSG00000115415|HPRD:02777|Vega:OTTHUMG00000132699 2 2q32.2 signal transducer and activator of transcription 1, 91kDa protein-coding STAT1 signal transducer and activator of transcription 1, 91kDa O signal transducer and activator of transcription 1-alpha/beta|signal transducer and activator of transcription-1|transcription factor ISGF-3 components p91/p84 20121230 -9606 6773 STAT2 - ISGF-3|P113|STAT113 HGNC:11363|MIM:600556|Ensembl:ENSG00000170581|HPRD:02778|Vega:OTTHUMG00000170760 12 12q13.3 signal transducer and activator of transcription 2, 113kDa protein-coding STAT2 signal transducer and activator of transcription 2, 113kDa O interferon alpha induced transcriptional activator|signal transducer and activator of transcription 2 20121230 -9606 6774 STAT3 - APRF|HIES HGNC:11364|MIM:102582|Ensembl:ENSG00000168610|HPRD:00026|Vega:OTTHUMG00000150645 17 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) protein-coding STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) O DNA-binding protein APRF|acute-phase response factor|signal transducer and activator of transcription 3 20121230 -9606 6775 STAT4 - SLEB11 HGNC:11365|MIM:600558|Ensembl:ENSG00000138378|HPRD:02779|Vega:OTTHUMG00000132700 2 2q32.2-q32.3 signal transducer and activator of transcription 4 protein-coding STAT4 signal transducer and activator of transcription 4 O - 20121230 -9606 6776 STAT5A - MGF|STAT5 HGNC:11366|MIM:601511|Ensembl:ENSG00000126561|HPRD:03301|Vega:OTTHUMG00000150725 17 17q11.2 signal transducer and activator of transcription 5A protein-coding STAT5A signal transducer and activator of transcription 5A O - 20121230 -9606 6777 STAT5B - STAT5 HGNC:11367|MIM:604260|Ensembl:ENSG00000173757|HPRD:05037|Vega:OTTHUMG00000150724 17 17q11.2 signal transducer and activator of transcription 5B protein-coding STAT5B signal transducer and activator of transcription 5B O transcription factor STAT5B 20121230 -9606 6778 STAT6 - D12S1644|IL-4-STAT|STAT6B|STAT6C HGNC:11368|MIM:601512|Ensembl:ENSG00000166888|HPRD:03302|Vega:OTTHUMG00000171194 12 12q13 signal transducer and activator of transcription 6, interleukin-4 induced protein-coding STAT6 signal transducer and activator of transcription 6, interleukin-4 induced O STAT, interleukin4-induced|signal transducer and activator of transcription 6|transcription factor IL-4 STAT 20121230 -9606 6779 STATH - STR HGNC:11369|MIM:184470|Ensembl:ENSG00000126549|HPRD:01696|Vega:OTTHUMG00000129394 4 4q13.3 statherin protein-coding STATH statherin O - 20121230 -9606 6780 STAU1 RP3-470L14.2 STAU HGNC:11370|MIM:601716|Ensembl:ENSG00000124214|HPRD:03422|Vega:OTTHUMG00000032691 20 20q13.1 staufen, RNA binding protein, homolog 1 (Drosophila) protein-coding STAU1 staufen, RNA binding protein, homolog 1 (Drosophila) O double-stranded RNA-binding protein Staufen homolog 1 20121230 -9606 6781 STC1 - STC HGNC:11373|MIM:601185|Ensembl:ENSG00000159167|HPRD:03115|Vega:OTTHUMG00000097853 8 8p21-p11.2 stanniocalcin 1 protein-coding STC1 stanniocalcin 1 O stanniocalcin-1 20121230 -9606 6782 HSPA13 - STCH HGNC:11375|MIM:601100|Ensembl:ENSG00000155304|HPRD:03061|Vega:OTTHUMG00000074261 21 21q11 heat shock protein 70kDa family, member 13 protein-coding HSPA13 heat shock protein 70kDa family, member 13 O heat shock 70 kDa protein 13|microsomal stress 70 protein ATPase core|microsomal stress-70 protein ATPase core|stress 70 protein chaperone, microsome-associated, 60kD|stress 70 protein chaperone, microsome-associated, 60kDa|stress-70 protein chaperone microsome-associated 60 kDa protein 20121230 -9606 6783 SULT1E1 - EST|EST-1|ST1E1|STE HGNC:11377|MIM:600043|Ensembl:ENSG00000109193|HPRD:08966|Vega:OTTHUMG00000129403 4 4q13.1 sulfotransferase family 1E, estrogen-preferring, member 1 protein-coding SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1 O estrogen sulfotransferase|estrone sulfotransferase|sulfotransferase 1E1|sulfotransferase, estrogen-preferring 20121230 -9606 6785 ELOVL4 - ADMD|CT118|ISQMR|STGD2|STGD3 HGNC:14415|MIM:605512|Ensembl:ENSG00000118402|HPRD:05697|Vega:OTTHUMG00000015087 6 6q14 ELOVL fatty acid elongase 4 protein-coding ELOVL4 ELOVL fatty acid elongase 4 O 3-keto acyl-CoA synthase ELOVL4|ELOVL FA elongase 4|Stargardt disease 3 (autosomal dominant)|cancer/testis antigen 118|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4|elongation of very long chain fatty acids protein 4 20121230 -9606 6786 STIM1 - D11S4896E|GOK|STIM1L HGNC:11386|MIM:605921|Ensembl:ENSG00000167323|HPRD:05803|Vega:OTTHUMG00000133360 11 11p15.5 stromal interaction molecule 1 protein-coding STIM1 stromal interaction molecule 1 O - 20121230 -9606 6787 NEK4 - NRK2|STK2|pp12301 HGNC:11399|MIM:601959|Ensembl:ENSG00000114904|HPRD:11880|Vega:OTTHUMG00000158836 3 3p21.1 NIMA-related kinase 4 protein-coding NEK4 NIMA-related kinase 4 O NIMA (never in mitosis gene a)-related kinase 4|never in mitosis A-related kinase 4|nimA-related protein kinase 4|serine/threonine kinase 2|serine/threonine protein kinase-2|serine/threonine-protein kinase 2|serine/threonine-protein kinase NRK2|serine/threonine-protein kinase Nek4 20121230 -9606 6788 STK3 - KRS1|MST2 HGNC:11406|MIM:605030|Ensembl:ENSG00000104375|HPRD:05433|Vega:OTTHUMG00000164651 8 8q22.2 serine/threonine kinase 3 protein-coding STK3 serine/threonine kinase 3 O MST-2|STE20-like kinase MST2|mammalian STE20-like protein kinase 2|serine/threonine kinase 3 (STE20 homolog, yeast)|serine/threonine kinase 3 (Ste20, yeast homolog)|serine/threonine-protein kinase 3|serine/threonine-protein kinase Krs-1 20121230 -9606 6789 STK4 - KRS2|MST1|TIIAC|YSK3 HGNC:11408|MIM:604965|Ensembl:ENSG00000101109|HPRD:05395|Vega:OTTHUMG00000033059 20 20q11.2-q13.2 serine/threonine kinase 4 protein-coding STK4 serine/threonine kinase 4 O MST-1|STE20-like kinase MST1|dJ211D12.2 (serine/threonine kinase 4 (MST1, KRS2))|kinase responsive to stress 2|mammalian STE20-like protein kinase 1|mammalian sterile 20-like 1|serine/threonine-protein kinase 4|serine/threonine-protein kinase Krs-2 20121230 -9606 6790 AURKA RP5-1167H4.6 AIK|ARK1|AURA|AURORA2|BTAK|PPP1R47|STK15|STK6|STK7 HGNC:11393|MIM:603072|Ensembl:ENSG00000087586|HPRD:04066|HPRD:04352|Vega:OTTHUMG00000032796 20 20q13 aurora kinase A protein-coding AURKA aurora kinase A O ARK-1|Aurora-A kinase|IPL1-related kinase|aurora 2|aurora-related kinase 1|aurora/IPL1-like kinase|aurora/IPL1-related kinase 1|breast tumor-amplified kinase|breast-tumor-amplified kinase|hARK1|protein phosphatase 1, regulatory subunit 47|serine/threonine kinase 6|serine/threonine protein kinase 15|serine/threonine-protein kinase 15|serine/threonine-protein kinase 6|serine/threonine-protein kinase aurora-A 20121230 -9606 6791 AURKAPS1 - AurAps1|STK6P HGNC:18611 1 1q41 aurora kinase A pseudogene 1 pseudo AURKAPS1 aurora kinase A pseudogene 1 O - 20121230 -9606 6792 CDKL5 RP1-245G19.3 EIEE2|ISSX|STK9 HGNC:11411|MIM:300203|Ensembl:ENSG00000008086|HPRD:02190|Vega:OTTHUMG00000021214 X Xp22 cyclin-dependent kinase-like 5 protein-coding CDKL5 cyclin-dependent kinase-like 5 O cyclin dependent kinase 5 transcript|serine/threonine kinase 9|serine/threonine-protein kinase 9 20121230 -9606 6793 STK10 - LOK|PRO2729 HGNC:11388|MIM:603919|Ensembl:ENSG00000072786|HPRD:06796|Vega:OTTHUMG00000163265 5 5q35.1 serine/threonine kinase 10 protein-coding STK10 serine/threonine kinase 10 O lymphocyte-oriented kinase|serine/threonine-protein kinase 10 20121230 -9606 6794 STK11 - LKB1|PJS|hLKB1 HGNC:11389|MIM:602216|Ensembl:ENSG00000118046|HPRD:03740|Vega:OTTHUMG00000180118 19 19p13.3 serine/threonine kinase 11 protein-coding STK11 serine/threonine kinase 11 O liver kinase B1|polarization-related protein LKB1|renal carcinoma antigen NY-REN-19|serine/threonine-protein kinase 11|serine/threonine-protein kinase LKB1|serine/threonine-protein kinase STK11 20121230 -9606 6795 AURKC - AIE2|AIK3|ARK3|AurC|SPGF5|STK13|aurora-C HGNC:11391|MIM:603495|Ensembl:ENSG00000105146|HPRD:04605 19 19q13.43 aurora kinase C protein-coding AURKC aurora kinase C O ARK-3|aurora 3|aurora-related kinase 3|aurora/IPL1-related kinase 3|aurora/IPL1/EG2 protein 2|serine/threonine kinase 13 (aurora/IPL1-like)|serine/threonine-protein kinase 13|serine/threonine-protein kinase aurora-C 20121230 -9606 6799 SULT1A2 - HAST4|P-PST|ST1A2|STP2|TSPST2 HGNC:11454|MIM:601292|Ensembl:ENSG00000197165|HPRD:03187|Vega:OTTHUMG00000048082 16 16p12.1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 protein-coding SULT1A2 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 O P-PST 2|aryl sulfotransferase 2|arylamine sulfotransferase|phenol sulfotransferase 2|phenol-preferring phenol sulfotransferase2|phenol-sulfating phenol sulfotransferase 2|phenolic-metabolizing (P) form of PST|sulfotransferase 1A2|thermostable phenol sulfotransferase 20121230 -9606 6801 STRN - SG2NA HGNC:11424|MIM:614765|Ensembl:ENSG00000115808|HPRD:18124|Vega:OTTHUMG00000100959 2 2p22.2 striatin, calmodulin binding protein protein-coding STRN striatin, calmodulin binding protein O striatin|striatin, calmodulin-binding protein 20121230 -9606 6803 STSP1 - STS-Y|STSP HGNC:11426 Y Yq11 steroid sulfatase (microsomal) pseudogene 1 pseudo STSP1 steroid sulfatase (microsomal) pseudogene 1 O - 20121230 -9606 6804 STX1A - HPC-1|P35-1|STX1|SYN1A HGNC:11433|MIM:186590|Ensembl:ENSG00000106089|HPRD:01721|Vega:OTTHUMG00000137422 7 7q11.23 syntaxin 1A (brain) protein-coding STX1A syntaxin 1A (brain) O neuron-specific antigen HPC-1|syntaxin-1A 20121230 -9606 6809 STX3 - STX3A HGNC:11438|MIM:600876|Ensembl:ENSG00000166900|HPRD:15985|Vega:OTTHUMG00000167353 11 11q12.1 syntaxin 3 protein-coding STX3 syntaxin 3 O syntaxin 3A|syntaxin-3 20121230 -9606 6810 STX4 - STX4A|p35-2 HGNC:11439|MIM:186591|Ensembl:ENSG00000103496|HPRD:01722|Vega:OTTHUMG00000132404 16 16p11.2 syntaxin 4 protein-coding STX4 syntaxin 4 O renal carcinoma antigen NY-REN-31|syntaxin 4A (placental)|syntaxin-4 20121230 -9606 6811 STX5 - SED5|STX5A HGNC:11440|MIM:603189|Ensembl:ENSG00000162236|HPRD:04426|Vega:OTTHUMG00000143864 11 11q12.3 syntaxin 5 protein-coding STX5 syntaxin 5 O syntaxin 5A|syntaxin-5 20121230 -9606 6812 STXBP1 RP11-56D16.3 MUNC18-1|NSEC1|P67|RBSEC1|UNC18 HGNC:11444|MIM:602926|Ensembl:ENSG00000136854|HPRD:04235|Vega:OTTHUMG00000020713 9 9q34.1 syntaxin binding protein 1 protein-coding STXBP1 syntaxin binding protein 1 O N-Sec1|neuronal SEC1|protein unc-18 homolog 1|protein unc-18 homolog A|syntaxin-binding protein 1|unc-18A|unc18-1 20121230 -9606 6813 STXBP2 - FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122 HGNC:11445|MIM:601717|Ensembl:ENSG00000076944|HPRD:03423 19 19p13.3-p13.2 syntaxin binding protein 2 protein-coding STXBP2 syntaxin binding protein 2 O protein unc-18 homolog 2|protein unc-18 homolog B|syntaxin-binding protein 2|unc-18B 20121230 -9606 6814 STXBP3 - MUNC18-3|MUNC18C|PSP|UNC-18C HGNC:11446|MIM:608339|Ensembl:ENSG00000116266|HPRD:10517|Vega:OTTHUMG00000011122 1 1p13.3 syntaxin binding protein 3 protein-coding STXBP3 syntaxin binding protein 3 O platelet Sec1 protein|protein unc-18 homolog 3|protein unc-18 homolog C|syntaxin 4 binding protein|syntaxin-binding protein 3|unc18-3 20121230 -9606 6815 STYX - - HGNC:11447|Ensembl:ENSG00000198252|HPRD:10258|Vega:OTTHUMG00000140306 14 - serine/threonine/tyrosine interacting protein protein-coding STYX serine/threonine/tyrosine interacting protein O protein tyrosine phosphatase-like protein|serine/threonine/tyrosine-interacting protein 20121230 -9606 6817 SULT1A1 OK/SW-cl.88 HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1 HGNC:11453|MIM:171150|Ensembl:ENSG00000196502|HPRD:01372|Vega:OTTHUMG00000131765 16 16p12.1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 protein-coding SULT1A1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 O P-PST 1|aryl sulfotransferase 1|phenol-sulfating phenol sulfotransferase 1|sulfotransferase 1A1|thermostable phenol sulfotransferase1|ts-PST 20121230 -9606 6818 SULT1A3 - HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST HGNC:11455|MIM:600641|Ensembl:ENSG00000261052|HPRD:07199|Vega:OTTHUMG00000048083 16 16p11.2 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 protein-coding SULT1A3 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 O aryl sulfotransferase 1A3/1A4|catecholamine-sulfating phenol sulfotransferase|dopamine-specific sulfotransferase|monoamine-sulfating phenosulfotransferase|phenol sulfotransferase 1A5|placental estrogen sulfotransferase|sulfokinase|sulfotransferase 1A3/1A4|thermolabile (monoamine, M form) phenol sulfotransferase 20121230 -9606 6819 SULT1C2 - ST1C1|ST1C2|SULT1C1|humSULTC2 HGNC:11456|MIM:602385|Ensembl:ENSG00000198203|HPRD:03858|Vega:OTTHUMG00000153215 2 2q12.3 sulfotransferase family, cytosolic, 1C, member 2 protein-coding SULT1C2 sulfotransferase family, cytosolic, 1C, member 2 O SULT1C#1|sulfotransferase 1C1|sulfotransferase 1C2|sulfotransferase family, cytosolic, 1C, member 1 20121230 -9606 6820 SULT2B1 - HSST2 HGNC:11459|MIM:604125|Ensembl:ENSG00000088002|HPRD:04991 19 19q13.3 sulfotransferase family, cytosolic, 2B, member 1 protein-coding SULT2B1 sulfotransferase family, cytosolic, 2B, member 1 O ST2B1|alcohol sulfotransferase|hydroxysteroid sulfotransferase 2|sulfotransferase 2B1|sulfotransferase family cytosolic 2B member 1 20121230 -9606 6821 SUOX - - HGNC:11460|MIM:606887|Ensembl:ENSG00000139531|HPRD:06055|Vega:OTTHUMG00000128503 12 12q13.2 sulfite oxidase protein-coding SUOX sulfite oxidase O sulfite oxidase, mitochondrial 20121230 -9606 6822 SULT2A1 - DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa HGNC:11458|MIM:125263|Ensembl:ENSG00000105398|HPRD:00502|Vega:OTTHUMG00000162469 19 19q13.3 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 protein-coding SULT2A1 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 O alcohol/hydroxysteroid sulfotransferase|bile salt sulfotransferase|bile-salt sulfotranasferase 2A1 20121230 -9606 6824 ETF1P1 - HCGVII|SUP45L2 HGNC:3478 6 6p21.3 eukaryotic translation termination factor 1 pseudogene 1 pseudo ETF1P1 eukaryotic translation termination factor 1 pseudogene 1 O - 20121230 -9606 6825 ETF1P2 - SUP45L3 HGNC:3479 7 7q36.1 eukaryotic translation termination factor 1 pseudogene 2 pseudo ETF1P2 eukaryotic translation termination factor 1 pseudogene 2 O - 20121230 -9606 6827 SUPT4H1 - SPT4|SPT4H|SUPT4H HGNC:11467|MIM:603555|Ensembl:ENSG00000213246|HPRD:16026|Vega:OTTHUMG00000178926 17 17q21-q23 suppressor of Ty 4 homolog 1 (S. cerevisiae) protein-coding SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) O DRB sensitivity-inducing factor 14 kDa subunit|DSIF p14|small hSpt4 subunit|transcription elongation factor SPT4 20121230 -9606 6829 SUPT5H - SPT5|SPT5H|Tat-CT1 HGNC:11469|MIM:602102|Ensembl:ENSG00000196235|HPRD:03655 19 19q13 suppressor of Ty 5 homolog (S. cerevisiae) protein-coding SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) O DRB sensitivity-inducing factor 160 kDa subunit|DRB sensitivity-inducing factor large subunit|DSIF large subunit|DSIF p160|Tat-cotransactivator 1 protein|hSPT5|transcription elongation factor SPT5 20121230 -9606 6830 SUPT6H - SPT6|SPT6H|emb-5 HGNC:11470|MIM:601333|Ensembl:ENSG00000109111|HPRD:03211|Vega:OTTHUMG00000179449 17 17q11.2 suppressor of Ty 6 homolog (S. cerevisiae) protein-coding SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) O hSPT6|tat-CT2 protein|tat-cotransactivator 2 protein|transcription elongation factor SPT6 20121230 -9606 6832 SUPV3L1 RP11-227H15.2 SUV3 HGNC:11471|MIM:605122|Ensembl:ENSG00000156502|HPRD:05493|Vega:OTTHUMG00000018375 10 10q22.1 suppressor of var1, 3-like 1 (S. cerevisiae) protein-coding SUPV3L1 suppressor of var1, 3-like 1 (S. cerevisiae) O ATP-dependent RNA helicase SUPV3L1, mitochondrial|SUV3-like protein 1|suppressor of var1 3-like protein 1|suppressor of var1, 3-like 1(SUV3) 20121230 -9606 6833 ABCC8 - ABC36|HHF1|HI|HRINS|MRP8|PHHI|SUR|SUR1|SUR1delta2|TNDM2 HGNC:59|MIM:600509|Ensembl:ENSG00000006071|HPRD:02741|Vega:OTTHUMG00000166316 11 11p15.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 protein-coding ABCC8 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 O ATP-binding cassette sub-family C member 8|ATP-binding cassette transporter sub-family C member 8|sulfonylurea receptor (hyperinsulinemia)|sulfonylurea receptor 1 20121230 -9606 6834 SURF1 - - HGNC:11474|MIM:185620|Ensembl:ENSG00000148290|HPRD:01711|Vega:OTTHUMG00000020866 9 9q34.2 surfeit 1 protein-coding SURF1 surfeit 1 O surfeit locus protein 1 20121230 -9606 6835 SURF2 - SURF-2 HGNC:11475|MIM:185630|Ensembl:ENSG00000148291|HPRD:15948|Vega:OTTHUMG00000020867 9 9q34.2 surfeit 2 protein-coding SURF2 surfeit 2 O surfeit locus protein 2 20121230 -9606 6836 SURF4 RP11-244N20.4 ERV29 HGNC:11476|MIM:185660|Ensembl:ENSG00000148248|HPRD:01715|Vega:OTTHUMG00000020868 9 9q34.2 surfeit 4 protein-coding SURF4 surfeit 4 O surface 4 integral membrane protein|surfeit locus protein 4 20121230 -9606 6837 MED22 RP11-244N20.9 MED24|SURF5|surf-5 HGNC:11477|MIM:185641|Ensembl:ENSG00000148297|HPRD:01713|Vega:OTTHUMG00000020869 9 9q34.2 mediator complex subunit 22 protein-coding MED22 mediator complex subunit 22 O mediator of RNA polymerase II transcription subunit 22|surfeit 5|surfeit locus protein 5 20121230 -9606 6838 SURF6 - RRP14 HGNC:11478|MIM:185642|Ensembl:ENSG00000148296|HPRD:01714|Vega:OTTHUMG00000020871 9 9q34.2 surfeit 6 protein-coding SURF6 surfeit 6 O surfeit locus protein 6 20121230 -9606 6839 SUV39H1 - KMT1A|MG44|SUV39H HGNC:11479|MIM:300254|Ensembl:ENSG00000101945|HPRD:02221|Vega:OTTHUMG00000022701 X Xp11.23 suppressor of variegation 3-9 homolog 1 (Drosophila) protein-coding SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) O H3-K9-HMTase 1|Su(var)3-9 homolog 1|histone H3-K9 methyltransferase 1|histone-lysine N-methyltransferase SUV39H1|histone-lysine N-methyltransferase, H3 lysine-9 specific 1|lysine N-methyltransferase 1A|position-effect variegation 3-9 homolog 20121230 -9606 6840 SVIL RP11-534G20.1 - HGNC:11480|MIM:604126|Ensembl:ENSG00000197321|HPRD:04992|Vega:OTTHUMG00000017882 10 10p11.2 supervillin protein-coding SVIL supervillin O archvillin|membrane-associated F-actin binding protein p205|p205/p250 20121230 -9606 6843 VAMP1 - SYB1|VAMP-1 HGNC:12642|MIM:185880|Ensembl:ENSG00000139190|HPRD:01716|Vega:OTTHUMG00000168269 12 12p vesicle-associated membrane protein 1 (synaptobrevin 1) protein-coding VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) O synaptobrevin 1|synaptobrevin-1|vesicle-associated membrane protein 1 20121230 -9606 6844 VAMP2 - SYB2|VAMP-2 HGNC:12643|MIM:185881|Ensembl:ENSG00000220205|Ensembl:ENSG00000263620|HPRD:01717|Vega:OTTHUMG00000150254|Vega:OTTHUMG00000178326 17 17p13.1 vesicle-associated membrane protein 2 (synaptobrevin 2) protein-coding VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) O synaptobrevin 2|synaptobrevin-2|vesicle associated membrane protein 2|vesicle-associated membrane protein 2 20121230 -9606 6845 VAMP7 - SYBL1|TI-VAMP|TIVAMP|VAMP-7 HGNC:11486|MIM:300053|Ensembl:ENSG00000124333|HPRD:02084|Vega:OTTHUMG00000022679 X|Y Xq28 and Yq12 vesicle-associated membrane protein 7 protein-coding VAMP7 vesicle-associated membrane protein 7 O synaptobrevin-like 1|synaptobrevin-like protein 1|tetanus neurotoxin-insensitive VAMP|tetanus-insensitive VAMP 20121230 -9606 6846 XCL2 hCG_1729916 SCM-1b|SCM1B|SCYC2 HGNC:10646|MIM:604828|Ensembl:ENSG00000143185|HPRD:05317|Vega:OTTHUMG00000034549 1 1q24.2 chemokine (C motif) ligand 2 protein-coding XCL2 chemokine (C motif) ligand 2 O XC chemokine ligand 2|c motif chemokine 2|cytokine SCM-1 beta|small inducible cytokine subfamily C, member 2 20121230 -9606 6847 SYCP1 RP11-109G4.1 CT8|HOM-TES-14|SCP1 HGNC:11487|MIM:602162|Ensembl:ENSG00000198765|HPRD:03698|Vega:OTTHUMG00000012057 1 1p13-p12 synaptonemal complex protein 1 protein-coding SYCP1 synaptonemal complex protein 1 O SCP-1|cancer/testis antigen 8 20121230 -9606 6850 SYK - p72-Syk HGNC:11491|MIM:600085|Ensembl:ENSG00000165025|HPRD:02514|Vega:OTTHUMG00000020200 9 9q22 spleen tyrosine kinase protein-coding SYK spleen tyrosine kinase O tyrosine-protein kinase SYK 20121230 -9606 6852 SYM2 - - HGNC:11493 - - symphalangism 2 (distal) unknown SYM2 symphalangism 2 (distal) O - 20121208 -9606 6853 SYN1 RP1-230G1.2 SYN1a|SYN1b|SYNI HGNC:11494|MIM:313440|Ensembl:ENSG00000008056|HPRD:02433|Vega:OTTHUMG00000021454 X Xp11.23 synapsin I protein-coding SYN1 synapsin I O brain protein 4.1|synapsin-1 20121230 -9606 6854 SYN2 - SYNII|SYNIIa|SYNIIb HGNC:11495|MIM:600755|Ensembl:ENSG00000157152|HPRD:02857|Vega:OTTHUMG00000155335 3 3p25 synapsin II protein-coding SYN2 synapsin II O synapsin-2 20121230 -9606 6855 SYP - MRXSYP HGNC:11506|MIM:313475|Ensembl:ENSG00000102003|HPRD:02435|Vega:OTTHUMG00000034557 X Xp11.23-p11.22 synaptophysin protein-coding SYP synaptophysin O major synaptic vesicle protein P38 20121230 -9606 6856 SYPL1 - H-SP1|SYPL HGNC:11507|Ensembl:ENSG00000008282|HPRD:15459|Vega:OTTHUMG00000157587 7 7q22.3 synaptophysin-like 1 protein-coding SYPL1 synaptophysin-like 1 O pantophysin|synaptophysin-like protein 1 20121230 -9606 6857 SYT1 - P65|SVP65|SYT HGNC:11509|MIM:185605|Ensembl:ENSG00000067715|HPRD:01710|Vega:OTTHUMG00000134326 12 12cen-q21 synaptotagmin I protein-coding SYT1 synaptotagmin I O synaptotagmin 1|synaptotagmin-1|sytI 20121230 -9606 6860 SYT4 - HsT1192 HGNC:11512|MIM:600103|Ensembl:ENSG00000132872|HPRD:02519|Vega:OTTHUMG00000132610 18 18q12.3 synaptotagmin IV protein-coding SYT4 synaptotagmin IV O synaptotagmin 4|synaptotagmin-4|sytIV 20121230 -9606 6861 SYT5 - - HGNC:11513|MIM:600782|Ensembl:ENSG00000129990|HPRD:02870|Vega:OTTHUMG00000180669 19 19q|11p synaptotagmin V protein-coding SYT5 synaptotagmin V O synaptotagmin 5|synaptotagmin-5|sytV 20121230 -9606 6862 T RP11-459F1.1 TFT HGNC:11515|MIM:601397|Ensembl:ENSG00000164458|HPRD:03236|Vega:OTTHUMG00000015991 6 6q27 T, brachyury homolog (mouse) protein-coding T T, brachyury homolog (mouse) O T brachyury homolog|brachyury protein|protein T 20121230 -9606 6863 TAC1 - Hs.2563|NK2|NKNA|NPK|TAC2 HGNC:11517|MIM:162320|Ensembl:ENSG00000006128|HPRD:08876|Vega:OTTHUMG00000154069 7 7q21-q22 tachykinin, precursor 1 protein-coding TAC1 tachykinin, precursor 1 O PPT|neurokinin 1|neurokinin 2|neurokinin A|neurokinin alpha|neuromedin L|neuropeptide K|neuropeptide gamma|protachykinin-1|substance K|substance P|tachykinin 2|tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma) 20121230 -9606 6865 TACR2 - NK2R|NKNAR|SKR|TAC2R HGNC:11527|MIM:162321|Ensembl:ENSG00000075073|HPRD:01207|Vega:OTTHUMG00000018377 10 10q22.1 tachykinin receptor 2 protein-coding TACR2 tachykinin receptor 2 O NK-2 receptor|NK-2R|neurokinin 2 receptor|neurokinin A receptor|seven transmembrane helix receptor|substance K receptor|substance-K receptor 20121230 -9606 6866 TAC3 UNQ585/PRO1155 HH10|NKB|NKNB|PRO1155|ZNEUROK1 HGNC:11521|MIM:162330|Ensembl:ENSG00000166863|HPRD:08877|Vega:OTTHUMG00000156958 12 12q13-q21 tachykinin 3 protein-coding TAC3 tachykinin 3 O gamma tachykinin 3|neuromedin K|preprotachykinin B|tachykinin-3 20121230 -9606 6867 TACC1 - Ga55 HGNC:11522|MIM:605301|Ensembl:ENSG00000147526|HPRD:10391|Vega:OTTHUMG00000164018 8 8p11.22 transforming, acidic coiled-coil containing protein 1 protein-coding TACC1 transforming, acidic coiled-coil containing protein 1 O gastric cancer antigen Ga55|taxin-1|transforming acidic coiled-coil-containing protein 1 20121230 -9606 6868 ADAM17 - ADAM18|CD156B|CSVP|NISBD|TACE HGNC:195|MIM:603639|Ensembl:ENSG00000151694|HPRD:04703|Vega:OTTHUMG00000090425 2 2p25 ADAM metallopeptidase domain 17 protein-coding ADAM17 ADAM metallopeptidase domain 17 O ADAM metallopeptidase domain 18|TNF-alpha convertase|TNF-alpha converting enzyme|disintegrin and metalloproteinase domain-containing protein 17|snake venom-like protease|tumor necrosis factor, alpha, converting enzyme 20121230 -9606 6869 TACR1 - NK1R|NKIR|SPR|TAC1R HGNC:11526|MIM:162323|Ensembl:ENSG00000115353|HPRD:01208|Vega:OTTHUMG00000129973 2 2p12 tachykinin receptor 1 protein-coding TACR1 tachykinin receptor 1 O NK-1 receptor|NK-1R|substance-P receptor|tachykinin receptor 1 (substance P receptor; neurokinin-1 receptor) 20121230 -9606 6870 TACR3 - HH11|NK-3R|NK3R|NKR|TAC3RL HGNC:11528|MIM:162332|Ensembl:ENSG00000169836|HPRD:01209|Vega:OTTHUMG00000131124 4 4q25 tachykinin receptor 3 protein-coding TACR3 tachykinin receptor 3 O NK-3 receptor|neurokinin B receptor|neurokinin beta receptor|neuromedin-K receptor 20121230 -9606 6871 TADA2A KL04P ADA2|ADA2A|TADA2L|hADA2 HGNC:11531|MIM:602276|Ensembl:ENSG00000108264|HPRD:03784|Vega:OTTHUMG00000133060 17 17q12-q21 transcriptional adaptor 2A protein-coding TADA2A transcriptional adaptor 2A O ADA2-like protein|transcriptional adapter 2-alpha|transcriptional adaptor 2 alpha 20121230 -9606 6872 TAF1 - BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|N-TAF1|NSCL2|OF|P250|TAF2A|TAFII250|XDP HGNC:11535|MIM:313650|Ensembl:ENSG00000147133|HPRD:02436|Vega:OTTHUMG00000022723 X Xq13.1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa protein-coding TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa O TAF(II)250|TAFII-250|TBP-associated factor 250 kDa|cell cycle gene 1 protein|cell cycle, G1 phase defect|complementation of cell cycle block, G1-to-S|transcription factor TFIID p250 polypeptide|transcription initiation factor TFIID 250 kDa subunit|transcription initiation factor TFIID subunit 1 20121230 -9606 6873 TAF2 - CIF150|TAF2B|TAFII150 HGNC:11536|MIM:604912|Ensembl:ENSG00000064313|HPRD:07060|Vega:OTTHUMG00000165009 8 8q24.12 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa protein-coding TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa O 150 kDa cofactor of initiator function|RNA polymerase II TBP-associated factor subunit B|TAF(II)150|TAFII-150|TATA box binding protein (TBP)-associated factor, RNA polymerase II, B, 150kD|TBP-associated factor 150 kDa|cofactor of initiator function, 150kD subunit|transcription initiation factor TFIID 150 kDa subunit|transcription initiation factor TFIID subunit 2 20121230 -9606 6874 TAF4 RP5-1107C24.1 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 HGNC:11537|MIM:601796|Ensembl:ENSG00000130699|HPRD:11797|Vega:OTTHUMG00000032893 20 20q13.33 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa protein-coding TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa O RNA polymerase II TBP-associated factor subunit C|TAF(II)130|TAF(II)135|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135 kD|TAFII-130|TAFII-135|TATA box binding protein (TBP)-associated factor, RNA polymerase II, C1, 130kD|TBP-associated factor 4|transcription initiation factor TFIID 130 kDa subunit|transcription initiation factor TFIID 135 kD subunit|transcription initiation factor TFIID 135 kDa subunit|transcription initiation factor TFIID subunit 4 20121230 -9606 6875 TAF4B - TAF2C2|TAFII105 HGNC:11538|MIM:601689|Ensembl:ENSG00000141384|Vega:OTTHUMG00000179429 18 18q11.2 TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa protein-coding TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa O TAF(II)105|TAFII-105|TATA box binding protein (TBP)-associated factor 4B|TATA box binding protein (TBP)-associated factor, RNA polymerase II, C2, 105kD|transcription initiation factor TFIID 105 kD subunit|transcription initiation factor TFIID 105 kDa subunit|transcription initiation factor TFIID subunit 4B 20121230 -9606 6876 TAGLN - SM22|SMCC|TAGLN1|WS3-10 HGNC:11553|MIM:600818|Ensembl:ENSG00000149591|HPRD:02891|Vega:OTTHUMG00000167067 11 11q23.2 transgelin protein-coding TAGLN transgelin O 22 kDa actin-binding protein|SM22-alpha|smooth muscle protein 22-alpha|transgelin variant 2 20121230 -9606 6877 TAF5 - TAF2D|TAFII100 HGNC:11539|MIM:601787|Ensembl:ENSG00000148835|HPRD:11876|Vega:OTTHUMG00000018985 10 10q24-q25.2 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa protein-coding TAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa O TAF(II)100|TAFII-100|TATA box binding protein (TBP)-associated factor 2D|TATA box binding protein (TBP)-associated factor, RNA polymerase II, D, 100kD|transcription initiation factor TFIID 100 kD subunit|transcription initiation factor TFIID 100 kDa subunit|transcription initiation factor TFIID subunit 5 20121230 -9606 6878 TAF6 - MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85 HGNC:11540|MIM:602955|Ensembl:ENSG00000106290|HPRD:11807|Vega:OTTHUMG00000154771 7 7q22.1 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa protein-coding TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa O RNA polymerase II TBP-associated factor subunit E|TATA box binding protein (TBP)-associated factor, RNA polymerase II, E, 70/85kD|transcription initiation factor TFIID 70 kDa subunit|transcription initiation factor TFIID subunit 6 20121230 -9606 6879 TAF7 - TAF2F|TAFII55 HGNC:11541|MIM:600573|Ensembl:ENSG00000178913|HPRD:07196|Vega:OTTHUMG00000129628 5 5q31 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa protein-coding TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa O RNA polymerase II TBP-associated factor subunit F|TAF(II)55|TAFII-55|TATA box binding protein (TBP)-associated factor, RNA polymerase II, F, 55kD|TBP-associated factor F|transcription factor IID subunit TAFII55|transcription initiation factor TFIID 55 kDa subunit|transcription initiation factor TFIID subunit 7|transcription initiation factor TFIID, 55 kDa subunit 20121230 -9606 6880 TAF9 AD-004 AK6|CGI-137|CINAP|CIP|MGC:1603|MGC:3647|MGC:5067|TAF2G|TAFII31|TAFII32|TAFIID32|hCINAP HGNC:11542|MIM:600822|Ensembl:ENSG00000085231|HPRD:15983|Vega:OTTHUMG00000099359 5 5q11.2-q13.1 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa protein-coding TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa O ATP-AMP transphosphorylase 6|RNA polymerase II TBP-associated factor subunit G|STAF31/32|TAFII-31|TAFII-32|adenylate kinase 6|adenylate kinase isoenzyme 6|adrenal gland protein AD-004|coilin interacting protein|coilin-interacting nuclear ATPase protein|transcription initiation factor TFIID 31 kD subunit|transcription initiation factor TFIID 31 kDa subunit|transcription initiation factor TFIID 32 kDa subunit|transcription initiation factor TFIID subunit 9 20121230 -9606 6881 TAF10 - TAF2A|TAF2H|TAFII30 HGNC:11543|MIM:600475|Ensembl:ENSG00000166337|HPRD:15972|Vega:OTTHUMG00000133402 11 11p15.3 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa protein-coding TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa O STAF28|TAF(II)30|TAFII-30|TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD|transcription initiation factor TFIID 30 kD subunit|transcription initiation factor TFIID 30 kDa subunit|transcription initiation factor TFIID subunit 10 20121230 -9606 6882 TAF11 PRO2134 MGC:15243|TAF2I|TAFII28 HGNC:11544|MIM:600772|Ensembl:ENSG00000064995|HPRD:15980|Vega:OTTHUMG00000014556 6 6p21.31 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa protein-coding TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa O TAF(II)28|TAFII-28|TATA box binding protein (TBP)-associated factor, RNA polymerase II, I, 28kD|TFIID subunit p30-beta|transcription initiation factor TFIID 28 kD subunit|transcription initiation factor TFIID 28 kDa subunit|transcription initiation factor TFIID subunit 11 20121230 -9606 6883 TAF12 - TAF2J|TAFII20 HGNC:11545|MIM:600773|Ensembl:ENSG00000120656|HPRD:15981|Vega:OTTHUMG00000003655 1 1p35.3 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa protein-coding TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa O TAFII-20/TAFII-15|TAFII20/TAFII15|TATA box binding protein (TBP)-associated factor, RNA polymerase II, J, 20kD|transcription initiation factor TFIID 20/15 kDa subunits|transcription initiation factor TFIID subunit 12 20121230 -9606 6884 TAF13 - TAF(II)18|TAF2K|TAFII-18|TAFII18 HGNC:11546|MIM:600774|Ensembl:ENSG00000197780|Vega:OTTHUMG00000042363 1 1p13.3 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa protein-coding TAF13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa O TATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kD|transcription initiation factor TFIID 18 kD subunit|transcription initiation factor TFIID 18 kDa subunit|transcription initiation factor TFIID subunit 13 20121230 -9606 6885 MAP3K7 RP1-154G14.1 MEKK7|TAK1|TGF1a HGNC:6859|MIM:602614|Ensembl:ENSG00000135341|HPRD:04011|Vega:OTTHUMG00000015217 6 6q15 mitogen-activated protein kinase kinase kinase 7 protein-coding MAP3K7 mitogen-activated protein kinase kinase kinase 7 O TGF-beta activated kinase 1|TGF-beta-activated kinase 1|transforming growth factor-beta-activated kinase 1 20121230 -9606 6886 TAL1 - SCL|TCL5|bHLHa17|tal-1 HGNC:11556|MIM:187040|Ensembl:ENSG00000162367|HPRD:01753|Vega:OTTHUMG00000007847 1 1p32 T-cell acute lymphocytic leukemia 1 protein-coding TAL1 T-cell acute lymphocytic leukemia 1 O T-cell acute lymphocytic leukemia protein 1|T-cell leukemia/lymphoma protein 5|class A basic helix-loop-helix protein 17|stem cell protein|tal-1 product 20121230 -9606 6887 TAL2 - - HGNC:11557|MIM:186855|Ensembl:ENSG00000186051|HPRD:01735|Vega:OTTHUMG00000020424 9 9q32 T-cell acute lymphocytic leukemia 2 protein-coding TAL2 T-cell acute lymphocytic leukemia 2 O T-cell acute lymphocytic leukemia protein 2|TAL-2|class A basic helix-loop-helix protein 19 20121230 -9606 6888 TALDO1 - TAL|TAL-H|TALDOR|TALH HGNC:11559|MIM:602063|Ensembl:ENSG00000177156|HPRD:03640|Vega:OTTHUMG00000133318 11 11p15.5-p15.4 transaldolase 1 protein-coding TALDO1 transaldolase 1 O dihydroxyacetone transferase|glycerone transferase|transaldolase 20121230 -9606 6889 TALDO1P1 - TAL-H|TALDO|TALDOP1 HGNC:11560 1 1p32.3 transaldolase 1 pseudogene 1 pseudo TALDO1P1 transaldolase 1 pseudogene 1 O - 20121230 -9606 6890 TAP1 DAAP-57C1.5 ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N HGNC:43|MIM:170260|Ensembl:ENSG00000168394|HPRD:01359|Vega:OTTHUMG00000031067 6 6p21.3 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) protein-coding TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) O ABC transporter, MHC 1|ATP-binding cassette sub-family B member 2|ATP-binding cassette, sub-family B (MDR/TAP), member 2|antigen peptide transporter 1|peptide supply factor 1|peptide transporter PSF1|peptide transporter TAP1|peptide transporter involved in antigen processing 1|really interesting new gene 4 protein|transporter associated with antigen processing|transporter, ATP-binding cassette, major histocompatibility complex, 1 20121230 -9606 6891 TAP2 DAAP-57C1.2 ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11 HGNC:44|MIM:170261|Ensembl:ENSG00000204267|Ensembl:ENSG00000250264|HPRD:01360|Vega:OTTHUMG00000031068|Vega:OTTHUMG00000160697 6 6p21.3 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) protein-coding TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) O ABC transporter, MHC 2|ATP-binding cassette, sub-family B (MDR/TAP), member 3|antigen peptide transporter 2|peptide supply factor 2|peptide transporter PSF2|peptide transporter involved in antigen processing 2|really interesting new gene 11 protein|transporter 2, ABC (ATP binding cassette) 20121230 -9606 6892 TAPBP DADB-159G18.7 NGS17|TAPA|TPN|TPSN HGNC:11566|MIM:601962|Ensembl:ENSG00000231925|HPRD:09061|Vega:OTTHUMG00000031090 6 6p21.3 TAP binding protein (tapasin) protein-coding TAPBP TAP binding protein (tapasin) O NGS-17|TAP-associated protein|TAP-binding protein|tapasin 20121230 -9606 6893 TAPVR1 - APVR|TAPVR HGNC:11567|MIM:106700 4 4p13-q11 total anomalous pulmonary venous return 1 unknown TAPVR1 total anomalous pulmonary venous return 1 O - 20120622 -9606 6894 TARBP1 RP5-827C21.5 TRM3|TRP-185|TRP185 HGNC:11568|MIM:605052|Ensembl:ENSG00000059588|HPRD:05445|Vega:OTTHUMG00000037947 1 1q42.3 TAR (HIV-1) RNA binding protein 1 protein-coding TARBP1 TAR (HIV-1) RNA binding protein 1 O TAR (HIV) RNA binding protein 1|TAR (HIV) RNA-binding protein 1|TAR RNA loop binding protein|TAR RNA-binding protein 1|TAR RNA-binding protein of 185 kDa|probable methyltransferase TARBP1|tRNA methyltransferase 3 homolog 20121230 -9606 6895 TARBP2 - LOQS|TRBP|TRBP1|TRBP2 HGNC:11569|MIM:605053|Ensembl:ENSG00000139546|HPRD:05446|Vega:OTTHUMG00000169855 12 12q12-q13 TAR (HIV-1) RNA binding protein 2 protein-coding TARBP2 TAR (HIV-1) RNA binding protein 2 O RISC-loading complex subunit TARBP2|TAR (HIV) RNA binding protein 2|TAR (HIV) RNA-binding protein 2|TAR (HIV) RNA-binding protein TRBP1|TAR RNA binding protein 2|TAR RNA-binding protein 2|trans-activation responsive RNA-binding protein|trans-activation-responsive RNA-binding protein 20121230 -9606 6896 TARBP2P - TRBP HGNC:11570 8 8q22.3 TAR (HIV-1) RNA binding protein 2 pseudogene pseudo TARBP2P TAR (HIV-1) RNA binding protein 2 pseudogene O - 20121230 -9606 6897 TARS - ThrRS HGNC:11572|MIM:187790|Ensembl:ENSG00000113407|HPRD:01762|Vega:OTTHUMG00000090683 5 5p13.2 threonyl-tRNA synthetase protein-coding TARS threonyl-tRNA synthetase O threonine tRNA ligase 1, cytoplasmic|threonine--tRNA ligase, cytoplasmic|threonyl-tRNA synthetase, cytoplasmic 20121230 -9606 6898 TAT - - HGNC:11573|MIM:613018|Ensembl:ENSG00000198650|HPRD:11776|Vega:OTTHUMG00000137590 16 16q22.1 tyrosine aminotransferase protein-coding TAT tyrosine aminotransferase O L-tyrosine:2-oxoglutarate aminotransferase|tyrosine aminotransferase, cytosolic 20121230 -9606 6899 TBX1 - CAFS|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCFS HGNC:11592|MIM:602054|Ensembl:ENSG00000184058|HPRD:09069|Vega:OTTHUMG00000150421 22 22q11.21 T-box 1 protein-coding TBX1 T-box 1 O T-box 1 transcription factor C|T-box transcription factor TBX1|Testis-specific T-box protein|brachyury 20121230 -9606 6900 CNTN2 - AXT|TAG-1|TAX|TAX1 HGNC:2172|MIM:190197|Ensembl:ENSG00000184144|HPRD:01826|Vega:OTTHUMG00000037105 1 1q32.1 contactin 2 (axonal) protein-coding CNTN2 contactin 2 (axonal) O TAX-1|axonal glycoprotein TAG-1|axonin-1 cell adhesion molecule|contactin 2 (transiently expressed)|contactin-2|transient axonal glycoprotein 1|transiently-expressed axonal glycoprotein 20121230 -9606 6901 TAZ XX-FW83563B9.3 BTHS|CMD3A|EFE|EFE2|G4.5|LVNCX|Taz1 HGNC:11577|MIM:300394|Ensembl:ENSG00000102125|HPRD:02316|Vega:OTTHUMG00000033190 X Xq28 tafazzin protein-coding TAZ tafazzin O protein G4.5 20121230 -9606 6902 TBCA - - HGNC:11579|MIM:610058|Ensembl:ENSG00000171530|HPRD:18166|Vega:OTTHUMG00000102173 5 5q14.1 tubulin folding cofactor A protein-coding TBCA tubulin folding cofactor A O CFA|TCP1-chaperonin cofactor A|chaperonin cofactor A|tubulin-folding cofactor A|tubulin-specific chaperone A 20121230 -9606 6903 TBCC - CFC HGNC:11580|MIM:602971|Ensembl:ENSG00000124659|HPRD:04276|Vega:OTTHUMG00000014704 6 6p21.1 tubulin folding cofactor C protein-coding TBCC tubulin folding cofactor C O tubulin-folding cofactor C|tubulin-specific chaperone C 20121230 -9606 6904 TBCD PP1096 SSD-1|tfcD HGNC:11581|MIM:604649|Ensembl:ENSG00000141556|HPRD:05227|Vega:OTTHUMG00000177878 17 17q25.3 tubulin folding cofactor D protein-coding TBCD tubulin folding cofactor D O beta-tubulin cofactor D|tubulin-folding cofactor D|tubulin-specific chaperone D 20121230 -9606 6905 TBCE - HRD|KCS|KCS1|pac2 HGNC:11582|MIM:604934|Ensembl:ENSG00000116957|HPRD:05381|Vega:OTTHUMG00000039987 1 1q42.3 tubulin folding cofactor E protein-coding TBCE tubulin folding cofactor E O Kenny-Caffey syndrome|tubulin-folding cofactor E|tubulin-specific chaperone E 20121230 -9606 6906 SERPINA7 RP1-82J11.2 TBG HGNC:11583|MIM:314200|Ensembl:ENSG00000123561|HPRD:02438|Vega:OTTHUMG00000022144 X Xq22.2 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 protein-coding SERPINA7 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 O T4-binding globulin|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7|serpin A7|thyroxin-binding globulin|thyroxine-binding globulin 20121230 -9606 6907 TBL1X - EBI|SMAP55|TBL1 HGNC:11585|MIM:300196|Ensembl:ENSG00000101849|HPRD:02183|Vega:OTTHUMG00000021117 X Xp22.3 transducin (beta)-like 1X-linked protein-coding TBL1X transducin (beta)-like 1X-linked O F-box-like/WD repeat-containing protein TBL1X|transducin beta-like protein 1X|transducin-beta-like protein 1, X-linked 20121230 -9606 6908 TBP RP1-191N21.3 GTF2D|GTF2D1|HDL4|SCA17|TFIID HGNC:11588|MIM:600075|Ensembl:ENSG00000112592|HPRD:02511|Vega:OTTHUMG00000016084 6 6q27 TATA box binding protein protein-coding TBP TATA box binding protein O TATA sequence-binding protein|TATA-box binding protein N-terminal domain|TATA-box factor|TATA-box-binding protein|transcription initiation factor TFIID TBP subunit 20121230 -9606 6909 TBX2 - - HGNC:11597|MIM:600747|Ensembl:ENSG00000121068|HPRD:02850|Vega:OTTHUMG00000156986 17 17q23.2 T-box 2 protein-coding TBX2 T-box 2 O T-box protein 2|T-box transcription factor TBX2 20121230 -9606 6910 TBX5 - HOS HGNC:11604|MIM:601620|Ensembl:ENSG00000089225|HPRD:03372|Vega:OTTHUMG00000166191 12 12q24.1 T-box 5 protein-coding TBX5 T-box 5 O T-box protein 5|T-box transcription factor TBX5 20121230 -9606 6911 TBX6 - - HGNC:11605|MIM:602427|Ensembl:ENSG00000149922|HPRD:03888|Vega:OTTHUMG00000132115 16 16p11.2 T-box 6 protein-coding TBX6 T-box 6 O T-box protein 6|T-box transcription factor TBX6 20121230 -9606 6913 TBX15 RP4-794L19.1 TBX14 HGNC:11594|MIM:604127|Ensembl:ENSG00000092607|HPRD:16035|Vega:OTTHUMG00000012263 1 1p11.1 T-box 15 protein-coding TBX15 T-box 15 O T-box 14|T-box protein 14|T-box protein 15|T-box transcription factor TBX14|T-box transcription factor TBX15 20121230 -9606 6914 TBXA1R - - HGNC:11607 - - thromboxane A1 receptor protein-coding TBXA1R thromboxane A1 receptor O - 20080828 -9606 6915 TBXA2R - BDPLT13|TXA2-R HGNC:11608|MIM:188070|Ensembl:ENSG00000006638|HPRD:01768|Vega:OTTHUMG00000180806 19 19p13.3 thromboxane A2 receptor protein-coding TBXA2R thromboxane A2 receptor O prostanoid TP receptor 20121230 -9606 6916 TBXAS1 - BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS HGNC:11609|MIM:274180|Ensembl:ENSG00000059377|HPRD:02035|Vega:OTTHUMG00000157302 7 7q34-q35 thromboxane A synthase 1 (platelet) protein-coding TBXAS1 thromboxane A synthase 1 (platelet) O TXA synthase|cytochrome P450 5A1|cytochrome P450, family 5, subfamily A, polypeptide 1|platelet, cytochrome P450, subfamily V|thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)|thromboxane-A synthase 20121230 -9606 6917 TCEA1 - GTF2S|SII|TCEA|TF2S|TFIIS HGNC:11612|MIM:601425|Ensembl:ENSG00000187735|HPRD:03252|Vega:OTTHUMG00000164262 8 8q11.2 transcription elongation factor A (SII), 1 protein-coding TCEA1 transcription elongation factor A (SII), 1 O transcription elongation factor A protein 1|transcription elongation factor S-II protein 1|transcription elongation factor TFIIS.o 20121230 -9606 6918 TCEA1P1 - GTF2SP|TCEA1P HGNC:11613 9 9q22.33 transcription elongation factor A (SII), 1 pseudogene 1 pseudo TCEA1P1 transcription elongation factor A (SII), 1 pseudogene 1 O - 20121230 -9606 6919 TCEA2 RP11-299N6.2 TFIIS HGNC:11614|MIM:604784|Ensembl:ENSG00000171703|HPRD:16069|Vega:OTTHUMG00000033026 20 20q13.33 transcription elongation factor A (SII), 2 protein-coding TCEA2 transcription elongation factor A (SII), 2 O testis-specific S-II|transcription elongation factor A protein 2|transcription elongation factor S-II protein 2|transcription elongation factor TFIIS.1|transcription elongation factor TFIIS.l 20121230 -9606 6920 TCEA3 - TFIIS|TFIIS.H HGNC:11615|MIM:604128|Ensembl:ENSG00000204219|HPRD:16036|Vega:OTTHUMG00000003233 1 1p36.12 transcription elongation factor A (SII), 3 protein-coding TCEA3 transcription elongation factor A (SII), 3 O rhabdomyosarcoma antigen MU-RMS-40.22|transcription elongation factor A protein 3|transcription elongation factor S-II protein 3|transcription elongation factor TFIIS.h 20121230 -9606 6921 TCEB1 - SIII|eloC HGNC:11617|MIM:600788|Ensembl:ENSG00000154582|HPRD:02875|Vega:OTTHUMG00000164501 8 8q21.11 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) protein-coding TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) O RNA polymerase II transcription factor SIII subunit C|SIII p15|elongin 15 kDa subunit|elongin-C|transcription elongation factor B polypeptide 1|transcription elongation factor B, polypeptide 1 20121230 -9606 6922 SKP1P1 - EMC19|OCP2|TCEB1L|TCEB1P|TCEB1P1 HGNC:33696 7 7q11.21 S-phase kinase-associated protein 1 pseudogene 1 pseudo SKP1P1 S-phase kinase-associated protein 1 pseudogene 1 O - 20121230 -9606 6923 TCEB2 - ELOB|SIII HGNC:11619|MIM:600787|Ensembl:ENSG00000103363|HPRD:02874|Vega:OTTHUMG00000154125 16 16p12.3 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) protein-coding TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) O RNA polymerase II transcription factor SIII p18 subunit|RNA polymerase II transcription factor SIII subunit B|SIII p18|elongin 18 kDa subunit|elongin, 18-kD subunit|elongin-B|transcription elongation factor B polypeptide 2 20121230 -9606 6924 TCEB3 MSTP059 EloA|SIII|SIII p110|TCEB3A HGNC:11620|MIM:600786|Ensembl:ENSG00000011007|HPRD:02873|Vega:OTTHUMG00000002957 1 1p36.1 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) protein-coding TCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) O RNA polymerase II transcription factor SIII subunit A1|elongin 110 kDa subunit|elongin-A|transcription elongation factor B alpha subunit|transcription elongation factor B polypeptide 3 20121230 -9606 6925 TCF4 - E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|TCF-4|bHLHb19 HGNC:11634|MIM:602272|Ensembl:ENSG00000196628|HPRD:03780|Vega:OTTHUMG00000132713 18 18q21.1 transcription factor 4 protein-coding TCF4 transcription factor 4 O SL3-3 enhancer factor 2|class B basic helix-loop-helix protein 19|immunoglobulin transcription factor 2 20121230 -9606 6926 TBX3 - TBX3-ISO|UMS|XHL HGNC:11602|MIM:601621|Ensembl:ENSG00000135111|HPRD:03373|Vega:OTTHUMG00000169586 12 12q24.1 T-box 3 protein-coding TBX3 T-box 3 O T-box protein 3|T-box transcription factor TBX3|bladder cancer related protein XHL 20121230 -9606 6927 HNF1A - HNF-1A|HNF1|IDDM20|LFB1|MODY3|TCF-1|TCF1 HGNC:11621|MIM:142410|Ensembl:ENSG00000135100|HPRD:00800|Vega:OTTHUMG00000151015 12 12q24.2 HNF1 homeobox A protein-coding HNF1A HNF1 homeobox A O HNF-1-alpha|albumin proximal factor|hepatic nuclear factor 1|hepatocyte nuclear factor 1-alpha|interferon production regulator factor|liver-specific transcription factor LF-B1|transcription factor 1, hepatic 20121230 -9606 6928 HNF1B - FJHN|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HGNC:11630|MIM:189907|Ensembl:ENSG00000108753|HPRD:08926|Vega:OTTHUMG00000133123 17 17q12 HNF1 homeobox B protein-coding HNF1B HNF1 homeobox B O HNF-1-beta|HNF1 beta A|hepatocyte nuclear factor 1-beta|homeoprotein LFB3|transcription factor 2, hepatic 20121230 -9606 6929 TCF3 - E2A|E47|ITF1|TCF-3|VDIR|bHLHb21 HGNC:11633|MIM:147141|Ensembl:ENSG00000071564|HPRD:00918|Vega:OTTHUMG00000180031 19 19p13.3 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) protein-coding TCF3 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) O VDR interacting repressor|class B basic helix-loop-helix protein 21|helix-loop-helix protein HE47|immunoglobulin transcription factor 1|kappa-E2-binding factor|negative vitamin D response element-binding protein|transcription factor E2-alpha|transcription factor ITF-1|vitamin D receptor-interacting repressor 20121230 -9606 6932 TCF7 - TCF-1 HGNC:11639|MIM:189908|Ensembl:ENSG00000081059|HPRD:01797|Vega:OTTHUMG00000129124 5 5q31.1 transcription factor 7 (T-cell specific, HMG-box) protein-coding TCF7 transcription factor 7 (T-cell specific, HMG-box) O T-cell-specific transcription factor 1|transcription factor 7 20121230 -9606 6934 TCF7L2 RP11-357H24.1 TCF-4|TCF4 HGNC:11641|MIM:602228|Ensembl:ENSG00000148737|HPRD:03751|Vega:OTTHUMG00000019070 10 10q25.3 transcription factor 7-like 2 (T-cell specific, HMG-box) protein-coding TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) O HMG box transcription factor 4|T-cell factor 4|T-cell factor-4 variant A|T-cell factor-4 variant B|T-cell factor-4 variant C|T-cell factor-4 variant D|T-cell factor-4 variant E|T-cell factor-4 variant F|T-cell factor-4 variant G|T-cell factor-4 variant H|T-cell factor-4 variant I|T-cell factor-4 variant J|T-cell factor-4 variant K|T-cell factor-4 variant L|T-cell factor-4 variant M|T-cell factor-4 variant X2|T-cell-specific transcription factor 4|hTCF-4|transcription factor 7-like 2 20121230 -9606 6935 ZEB1 RP11-472N13.4 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A HGNC:11642|MIM:189909|Ensembl:ENSG00000148516|HPRD:01798|Vega:OTTHUMG00000017907 10 10p11.2 zinc finger E-box binding homeobox 1 protein-coding ZEB1 zinc finger E-box binding homeobox 1 O delta-crystallin enhancer binding factor 1|negative regulator of IL2|posterior polymorphous corneal dystrophy 3|transcription factor 8 (represses interleukin 2 expression)|zinc finger E-box-binding homeobox 1|zinc finger homeodomain enhancer-binding protein 20121230 -9606 6936 GCFC2 - C2orf3|DNABF|GCF|TCF9 HGNC:1317|MIM:189901|Ensembl:ENSG00000005436|HPRD:01791|Vega:OTTHUMG00000129989 2 2p12 GC-rich sequence DNA-binding factor 2 protein-coding GCFC2 GC-rich sequence DNA-binding factor 2 O GC binding factor|GC bindng factor|TCF-9|transcription factor 9 (binds GC-rich sequences) 20121230 -9606 6938 TCF12 - HEB|HTF4|HsT17266|bHLHb20 HGNC:11623|MIM:600480|Ensembl:ENSG00000140262|HPRD:02725|Vega:OTTHUMG00000132047 15 15q21 transcription factor 12 protein-coding TCF12 transcription factor 12 O DNA-binding protein HTF4|E-box-binding protein|TCF-12|class B basic helix-loop-helix protein 20|helix-loop-helix transcription factor 4|transcription factor HTF-4 20121230 -9606 6939 TCF15 - EC2|PARAXIS|bHLHa40 HGNC:11627|MIM:601010|Ensembl:ENSG00000125878|HPRD:03003|Vega:OTTHUMG00000031640 20 20p13 transcription factor 15 (basic helix-loop-helix) protein-coding TCF15 transcription factor 15 (basic helix-loop-helix) O TCF-15|basic helix-loop-helix transcription factor 15|class A basic helix-loop-helix protein 40|protein bHLH-EC2|transcription factor 15 20121230 -9606 6940 ZNF354A - EZNF|HKL1|KID-1|KID1|TCF17 HGNC:11628|MIM:602444|Ensembl:ENSG00000169131|HPRD:03900|Vega:OTTHUMG00000130895 5 5q35.3 zinc finger protein 354A protein-coding ZNF354A zinc finger protein 354A O TCF-17|transcription factor 17|zinc finger protein eZNF 20121230 -9606 6941 TCF19 DAMA-213L4.5 SC1|SC1-1 HGNC:11629|MIM:600912|Ensembl:ENSG00000137310|HPRD:15986|Vega:OTTHUMG00000031274 6 6p21.3 transcription factor 19 protein-coding TCF19 transcription factor 19 O SC1(TCF19)-6|SC1(TCF19)-7|SCI(TCF19)-4|TCF-19|transcription factor SC1 20121230 -9606 6942 TCF20 RP4-669P10.13-001 AR1|SPBP HGNC:11631|MIM:603107|Ensembl:ENSG00000100207|HPRD:04378|Vega:OTTHUMG00000150920 22 22q13.3|22q13.3 transcription factor 20 (AR1) protein-coding TCF20 transcription factor 20 (AR1) O SPRE-binding protein|TCF-20|nuclear factor SPBP|stromelysin-1 PDGF-responsive element-binding protein|stromelysin-1 platelet-derived growth factor-responsive element binding protein|transcription factor 20 20121230 -9606 6943 TCF21 - POD1|bHLHa23 HGNC:11632|MIM:603306|Ensembl:ENSG00000118526|HPRD:04493|Vega:OTTHUMG00000015608 6 6q23-q24 transcription factor 21 protein-coding TCF21 transcription factor 21 O capsulin|class A basic helix-loop-helix protein 23|epicardin|pod-1|podocyte-expressed 1 20121230 -9606 6944 VPS72 RP11-68I18.8 CFL1|Swc2|TCFL1|YL-1|YL1 HGNC:11644|MIM:600607|Ensembl:ENSG00000163159|HPRD:02791|Vega:OTTHUMG00000012345 1 1q21 vacuolar protein sorting 72 homolog (S. cerevisiae) protein-coding VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) O transcription factor-like 1|transformation suppressor gene YL-1|vacuolar protein sorting-associated protein 72 homolog 20121230 -9606 6945 MLX - MAD7|MXD7|TCFL4|bHLHd13 HGNC:11645|MIM:602976|Ensembl:ENSG00000108788|HPRD:04278|Vega:OTTHUMG00000180246 17 17q21.1 MLX, MAX dimerization protein protein-coding MLX MLX, MAX dimerization protein O BigMax protein|MAX-like bHLHZIP protein|class D basic helix-loop-helix protein 13|max-like protein X|transcription factor-like protein 4 20121230 -9606 6946 TCL4 - - HGNC:11650|MIM:186860 2 2q34 T-cell leukemia/lymphoma 4 unknown TCL4 T-cell leukemia/lymphoma 4 O - 20120622 -9606 6947 TCN1 - TC-1|TC1|TCI HGNC:11652|MIM:189905|Ensembl:ENSG00000134827|HPRD:01795|Vega:OTTHUMG00000167400 11 11q11-q12 transcobalamin I (vitamin B12 binding protein, R binder family) protein-coding TCN1 transcobalamin I (vitamin B12 binding protein, R binder family) O haptocorin|haptocorrin|transcobalamin-1 20121230 -9606 6948 TCN2 - D22S676|D22S750|II|TC|TC II|TC-2|TC2|TCII HGNC:11653|MIM:613441|Ensembl:ENSG00000185339|HPRD:02037|Vega:OTTHUMG00000151095 22 22q12.2 transcobalamin II protein-coding TCN2 transcobalamin II O macrocytic anemia|transcobalamin II; macrocytic anemia|transcobalamin-2|vitamin B12-binding protein 2 20121230 -9606 6949 TCOF1 - MFD1|TCS1|treacle HGNC:11654|MIM:606847|Ensembl:ENSG00000070814|HPRD:06026|Vega:OTTHUMG00000130081 5 5q32 Treacher Collins-Franceschetti syndrome 1 protein-coding TCOF1 Treacher Collins-Franceschetti syndrome 1 O Treacher Collins syndrome protein|nucleolar trafficking phosphoprotein|treacle protein 20121230 -9606 6950 TCP1 - CCT-alpha|CCT1|CCTa|D6S230E|TCP-1-alpha HGNC:11655|MIM:186980|Ensembl:ENSG00000120438|HPRD:01748|Vega:OTTHUMG00000015937 6 6q25.3-q26 t-complex 1 protein-coding TCP1 t-complex 1 O T-complex protein 1 subunit alpha|T-complex protein 1, alpha subunit|tailless complex polypeptide 1 20121230 -9606 6952 TCP1P2 - CCT1-2P|TCP1L2 HGNC:11660 5 5p13.1 t-complex 1 pseudogene 2 pseudo TCP1P2 t-complex 1 pseudogene 2 O - 20121230 -9606 6953 TCP10 RP3-366N23.2 TCP10A HGNC:11656|MIM:187020|Ensembl:ENSG00000203690|HPRD:01752|Vega:OTTHUMG00000016026 6 6q27 t-complex 10 protein-coding TCP10 t-complex 10 O T-complex protein 10A homolog|t-complex 10 (a murine tcp homolog)|t-complex 10 homolog 20121230 -9606 6954 TCP11 RP11-174N3.3 D6S230E|FPPR HGNC:11658|MIM:186982|Ensembl:ENSG00000124678|HPRD:01749|Vega:OTTHUMG00000014560 6 6p21.31 t-complex 11, testis-specific protein-coding TCP11 t-complex 11, testis-specific O T-complex protein 11 homolog|fertilization-promoting peptide receptor|t-complex 11 (a murine tcp homolog)|t-complex 11 homolog 20121230 -9606 6955 TRA@ - TCRA|TCRD|TRA HGNC:12027|MIM:186880 14 14q11.2 T cell receptor alpha locus protein-coding TRA@ T cell receptor alpha locus O T-cell antigen receptor, alpha polypeptide|T-cell receptor, alpha (V,D,J,C) 20121230 -9606 6956 TRAV6 - TCRAV5S1|TCRAV6S1 HGNC:12144|IMGT/GENE-DB:TRAV6 14 14q11 T cell receptor alpha variable 6 other TRAV6 T cell receptor alpha variable 6 O - 20121230 -9606 6957 TRB@ - TCRB|TRB HGNC:12155|MIM:186930 7 7q34 T cell receptor beta locus protein-coding TRB@ T cell receptor beta locus O T-cell antigen receptor, beta polypeptide, T-cell receptor, beta cluster|T-cell receptor, beta cluster 20121230 -9606 6958 TRBV29OR9-2 - TCRBV29S2|TCRBV4O|TCRBV4S2O|TRBV29/OR9-2 HGNC:12211|IMGT/GENE-DB:TRBV29/OR9-2 9 9p21 T cell receptor beta variable 29/OR9-2 (non-functional) pseudo TRBV29OR9-2 T cell receptor beta variable 29/OR9-2 (non-functional) O - 20121230 -9606 6959 TRBV21OR9-2 RP11-255A11.16-001 TCRBV10O|TCRBV10S2O|TCRBV21S2 HGNC:12199|IMGT/GENE-DB:TRBV21/OR9-2 9 9p21 T cell receptor beta variable 21/OR9-2 (pseudogene) pseudo TRBV21OR9-2 T cell receptor beta variable 21/OR9-2 (pseudogene) O - 20121230 -9606 6960 TRBV25OR9-2 - TCRBV11O|TCRBV11S2O|TCRBV25S2 HGNC:12206|IMGT/GENE-DB:TRBV25/OR9-2 9 9p21 T cell receptor beta variable 25/OR9-2 (pseudogene) pseudo TRBV25OR9-2 T cell receptor beta variable 25/OR9-2 (pseudogene) O - 20121230 -9606 6961 TRBV24OR9-2 - TCRBV15O|TCRBV15S2O|TCRBV24S2 HGNC:12204|IMGT/GENE-DB:TRBV24/OR9-2 9 9p21 T cell receptor beta variable 24/OR9-2 (pseudogene) pseudo TRBV24OR9-2 T cell receptor beta variable 24/OR9-2 (pseudogene) O - 20121230 -9606 6962 TRBV20OR9-2 - TCRBV20S2|TCRBV2O|TCRBV2S2O HGNC:12197|IMGT/GENE-DB:TRBV20/OR9-2 9 9p21 T cell receptor beta variable 20/OR9-2 (non-functional) pseudo TRBV20OR9-2 T cell receptor beta variable 20/OR9-2 (non-functional) O - 20121230 -9606 6964 TRD@ - TCRD|TCRDV1|TRD HGNC:12252|MIM:186810 14 14q11.2 T cell receptor delta locus protein-coding TRD@ T cell receptor delta locus O T-cell antigen receptor, delta polypeptide|T-cell receptor, delta (V,D,J,C) 20121230 -9606 6965 TRG@ - TCRG|TRG HGNC:12271|MIM:186970 7 7p14 T cell receptor gamma locus protein-coding TRG@ T cell receptor gamma locus O T-cell antigen receptor, gamma polypeptide|T-cell rearranging gene, gamma|T-cell receptor, gamma cluster 20121230 -9606 6966 TRGC1 - C1|TCRGC1 HGNC:12275|IMGT/GENE-DB:TRGC1 7 7p14 T cell receptor gamma constant 1 other TRGC1 T cell receptor gamma constant 1 O - 20121230 -9606 6967 TRGC2 - TCRGC2|TRGC2(2X)|TRGC2(3X) HGNC:12276|IMGT/GENE-DB:TRGC2 7 7p14 T cell receptor gamma constant 2 other TRGC2 T cell receptor gamma constant 2 O - 20121230 -9606 6968 TRGJ1 - J1|TCRGJ1 HGNC:12277|IMGT/GENE-DB:TRGJ1 7 7p14 T cell receptor gamma joining 1 other TRGJ1 T cell receptor gamma joining 1 O - 20121230 -9606 6969 TRGJ2 - J2|TCRGJ2 HGNC:12278|IMGT/GENE-DB:TRGJ2 7 7p14 T cell receptor gamma joining 2 other TRGJ2 T cell receptor gamma joining 2 O - 20121230 -9606 6970 TRGJP - JP|TCRGJP HGNC:12279|IMGT/GENE-DB:TRGJP 7 7p14 T cell receptor gamma joining P other TRGJP T cell receptor gamma joining P O - 20121230 -9606 6971 TRGJP1 - JP1|TCRGJP1 HGNC:12280|IMGT/GENE-DB:TRGJP1 7 7p14 T cell receptor gamma joining P1 other TRGJP1 T cell receptor gamma joining P1 O - 20121230 -9606 6972 TRGJP2 - JP2|TCRGJP2 HGNC:12281|IMGT/GENE-DB:TRGJP2 7 7p14 T cell receptor gamma joining P2 other TRGJP2 T cell receptor gamma joining P2 O - 20121230 -9606 6973 TRGV1 - TCRGV1|V1S1P HGNC:12284|IMGT/GENE-DB:TRGV1 7 7p14 T cell receptor gamma variable 1 (non-functional) pseudo TRGV1 T cell receptor gamma variable 1 (non-functional) O - 20121230 -9606 6974 TRGV2 - TCRGV2|VIS2 HGNC:12287|IMGT/GENE-DB:TRGV2 7 7p14 T cell receptor gamma variable 2 other TRGV2 T cell receptor gamma variable 2 O - 20121230 -9606 6975 TECTB - - HGNC:11721|MIM:602653|Ensembl:ENSG00000119913|HPRD:16005|Vega:OTTHUMG00000019056 10 10q25-q26 tectorin beta protein-coding TECTB tectorin beta O beta-tectorin 20121230 -9606 6976 TRGV3 - TCRGV3|V1S3 HGNC:12288|IMGT/GENE-DB:TRGV3 7 7p14 T cell receptor gamma variable 3 other TRGV3 T cell receptor gamma variable 3 O - 20121230 -9606 6977 TRGV4 - TCRGV4|V1S4 HGNC:12289|IMGT/GENE-DB:TRGV4 7 7p14 T cell receptor gamma variable 4 other TRGV4 T cell receptor gamma variable 4 O - 20121230 -9606 6978 TRGV5 - TCRGV5|V1S5 HGNC:12290|IMGT/GENE-DB:TRGV5 7 7p14 T cell receptor gamma variable 5 other TRGV5 T cell receptor gamma variable 5 O - 20121230 -9606 6979 TRGV5P - TCRGV5P|V1S5P HGNC:12291|IMGT/GENE-DB:TRGV5P 7 7p14 T cell receptor gamma variable 5P (pseudogene) pseudo TRGV5P T cell receptor gamma variable 5P (pseudogene) O - 20121230 -9606 6980 TRGV6 - TCRGV5P|TCRGV6|V1S5P|V1S6P HGNC:12292|IMGT/GENE-DB:TRGV6 7 7p14 T cell receptor gamma variable 6 (pseudogene) pseudo TRGV6 T cell receptor gamma variable 6 (pseudogene) O - 20121230 -9606 6981 TRGV7 - TCRGV7|V1S7P HGNC:12293|IMGT/GENE-DB:TRGV7 7 7p14 T cell receptor gamma variable 7 (pseudogene) pseudo TRGV7 T cell receptor gamma variable 7 (pseudogene) O - 20121230 -9606 6982 TRGV8 - TCRGV8|V1S8 HGNC:12294|IMGT/GENE-DB:TRGV8 7 7p14 T cell receptor gamma variable 8 other TRGV8 T cell receptor gamma variable 8 O - 20121230 -9606 6983 TRGV9 tcag7.888 TCRGV9|TRGC1|V2 HGNC:12295|IMGT/GENE-DB:TRGV9 7 7p14 T cell receptor gamma variable 9 other TRGV9 T cell receptor gamma variable 9 O - 20121230 -9606 6984 TRGV10 - TCRGV10|V3P HGNC:12285|IMGT/GENE-DB:TRGV10 7 7p14 T cell receptor gamma variable 10 (non-functional) pseudo TRGV10 T cell receptor gamma variable 10 (non-functional) O - 20121230 -9606 6985 TRGV11 - TCRGV11|V4P HGNC:12286|IMGT/GENE-DB:TRGV11 7 7p14 T cell receptor gamma variable 11 (non-functional) pseudo TRGV11 T cell receptor gamma variable 11 (non-functional) O - 20121230 -9606 6986 TRGVA - TCRGVA|V5P HGNC:12296|IMGT/GENE-DB:TRGVA 7 7p14 T cell receptor gamma variable A (pseudogene) pseudo TRGVA T cell receptor gamma variable A (pseudogene) O - 20121230 -9606 6987 TRGVB - TCRGVB|V6P HGNC:12297|IMGT/GENE-DB:TRGVB 7 7p14 T cell receptor gamma variable B (pseudogene) pseudo TRGVB T cell receptor gamma variable B (pseudogene) O - 20121230 -9606 6988 TCTA - - HGNC:11692|MIM:600690|Ensembl:ENSG00000145022|HPRD:15977|Vega:OTTHUMG00000156846 3 3p21 T-cell leukemia translocation altered protein-coding TCTA T-cell leukemia translocation altered O T-cell leukemia translocation-altered gene protein|T-cell leukemia translocation-associated gene protein 20121230 -9606 6990 DYNLT3 - RP3|TCTE1L|TCTEX1L HGNC:11694|MIM:300302|Ensembl:ENSG00000165169|HPRD:02249|Vega:OTTHUMG00000033172 X Xp21 dynein, light chain, Tctex-type 3 protein-coding DYNLT3 dynein, light chain, Tctex-type 3 O dynein light chain Tctex-type 3|protein 91/23 20121230 -9606 6991 TCTE3 - TCTEX1D3 HGNC:11695|MIM:186977|Ensembl:ENSG00000184786|HPRD:01747|Vega:OTTHUMG00000016068 6 6q27 t-complex-associated-testis-expressed 3 protein-coding TCTE3 t-complex-associated-testis-expressed 3 O T-complex testis-specific protein 3|T-complex-associated testis-expressed protein 3|Tctex1 domain containing 3|tcte-3|tctex1 domain-containing protein 3 20121230 -9606 6992 PPP1R11 DAAP-65D20.5 HCG-V|HCGV|IPP3|TCTE5|TCTEX5 HGNC:9285|MIM:606670|Ensembl:ENSG00000204619|HPRD:09449|Vega:OTTHUMG00000031260 6 6p21.3 protein phosphatase 1, regulatory (inhibitor) subunit 11 protein-coding PPP1R11 protein phosphatase 1, regulatory (inhibitor) subunit 11 O HCG V|hemochromatosis candidate gene V protein|inhibitor-3|protein phosphatase 1 regulatory subunit 11|protein phosphatase inhibitor 3|t-complex-associated-testis-expressed 5 20121230 -9606 6993 DYNLT1 RP11-114M11.1 CW-1|TCTEL1|tctex-1 HGNC:11697|MIM:601554|Ensembl:ENSG00000146425|HPRD:15987|Vega:OTTHUMG00000015918 6 6q25.2-q25.3 dynein, light chain, Tctex-type 1 protein-coding DYNLT1 dynein, light chain, Tctex-type 1 O T-complex testis-specific protein 1 homolog|dynein light chain Tctex-type 1|t-complex-associated-testis-expressed 1-like 1 20121230 -9606 6994 TDD - - HGNC:11698|MIM:309150 X - testicular 17,20-desmolase deficiency unknown TDD testicular 17,20-desmolase deficiency O - 20110215 -9606 6996 TDG - - HGNC:11700|MIM:601423|Ensembl:ENSG00000139372|HPRD:03251|Vega:OTTHUMG00000168418 12 12q24.1 thymine-DNA glycosylase protein-coding TDG thymine-DNA glycosylase O G/T mismatch-specific thymine DNA glycosylase 20121230 -9606 6997 TDGF1 - CR|CRGF|CRIPTO HGNC:11701|MIM:187395|Ensembl:ENSG00000241186|HPRD:01757|Vega:OTTHUMG00000133482 3 3p21.31 teratocarcinoma-derived growth factor 1 protein-coding TDGF1 teratocarcinoma-derived growth factor 1 O cripto-1 growth factor|epidermal growth factor-like cripto protein CR1 20121230 -9606 6998 TDGF1P3 - CR-3|CRIPTO|CRIPTO-3|CRIPTO3|TDGF1|TDGF2|TDGF3 HGNC:11703 X Xq22.3 teratocarcinoma-derived growth factor 1 pseudogene 3 pseudo TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 O - 20121230 -9606 6999 TDO2 - TDO|TO|TPH2|TRPO HGNC:11708|MIM:191070|Ensembl:ENSG00000151790|HPRD:01847|Vega:OTTHUMG00000161838 4 4q31-q32 tryptophan 2,3-dioxygenase protein-coding TDO2 tryptophan 2,3-dioxygenase O tryptamin 2,3-dioxygenase|tryptophan oxygenase|tryptophan pyrrolase|tryptophanase 20121230 -9606 7001 PRDX2 - NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA HGNC:9353|MIM:600538|Ensembl:ENSG00000167815|HPRD:02763|Vega:OTTHUMG00000134285 19 19p13.2 peroxiredoxin 2 protein-coding PRDX2 peroxiredoxin 2 O NKEF-B|natural killer cell-enhancing factor B|peroxiredoxin-2|thiol-specific antioxidant 1|thiol-specific antioxidant protein|thioredoxin peroxidase 1|thioredoxin-dependent peroxide reductase 1|torin 20121230 -9606 7002 TDPX2 - PAGB HGNC:11711 9 9p22 thioredoxin-dependent peroxide reductase 2 pseudo TDPX2 thioredoxin-dependent peroxide reductase 2 O - 20121230 -9606 7003 TEAD1 - AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 HGNC:11714|MIM:189967|Ensembl:ENSG00000187079|HPRD:01802|Vega:OTTHUMG00000165878 11 11p15.2 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) O protein GT-IIC|transcription factor 13|transcriptional enhancer factor 1|transcriptional enhancer factor TEF-1 20121230 -9606 7004 TEAD4 - EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B HGNC:11717|MIM:601714|Ensembl:ENSG00000197905|HPRD:03421|Vega:OTTHUMG00000168153 12 12p13.3-p13.2 TEA domain family member 4 protein-coding TEAD4 TEA domain family member 4 O related transcription enhancer factor 1B|transcription factor 13-like 1|transcription factor RTEF-1|transcriptional enhancer factor 1-related|transcriptional enhancer factor 3|transcriptional enhancer factor TEF-3 20121230 -9606 7005 TEAD3 RP1-109F14.4 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 HGNC:11716|MIM:603170|Ensembl:ENSG00000007866|HPRD:04411|Vega:OTTHUMG00000014571 6 6p21.2 TEA domain family member 3 protein-coding TEAD3 TEA domain family member 3 O TEA domain family member 5|transcriptional enhancer factor 5|transcriptional enhancer factor TEF-5|transcriptional enhancer factor TEF-5 (DTEF-1) 20121230 -9606 7006 TEC - PSCTK4 HGNC:11719|MIM:600583|Ensembl:ENSG00000135605|HPRD:02786|Vega:OTTHUMG00000128623 4 4p12 tec protein tyrosine kinase protein-coding TEC tec protein tyrosine kinase O tyrosine-protein kinase Tec 20121230 -9606 7007 TECTA - DFNA12|DFNA8|DFNB21 HGNC:11720|MIM:602574|Ensembl:ENSG00000109927|HPRD:03985|Vega:OTTHUMG00000149908 11 11q22-q24 tectorin alpha protein-coding TECTA tectorin alpha O alpha-tectorin 20121230 -9606 7008 TEF CTA-223H9.6 - HGNC:11722|MIM:188595|Ensembl:ENSG00000167074|HPRD:01783|Vega:OTTHUMG00000150968 22 22q13.2 thyrotrophic embryonic factor protein-coding TEF thyrotrophic embryonic factor O thyrotroph embryonic factor 20121230 -9606 7009 TMBIM6 - BAXI1|BI-1|TEGT HGNC:11723|MIM:600748|Ensembl:ENSG00000139644|HPRD:02851|Vega:OTTHUMG00000169652 12 12q12-q13 transmembrane BAX inhibitor motif containing 6 protein-coding TMBIM6 transmembrane BAX inhibitor motif containing 6 O bax inhibitor 1|testis enhanced gene transcript|testis-enhanced gene transcript protein|transmembrane BAX inhibitor motif-containing protein 6 20121230 -9606 7010 TEK - CD202B|TIE-2|TIE2|VMCM|VMCM1 HGNC:11724|MIM:600221|Ensembl:ENSG00000120156|HPRD:02571|Vega:OTTHUMG00000019712 9 9p21 TEK tyrosine kinase, endothelial protein-coding TEK TEK tyrosine kinase, endothelial O angiopoietin-1 receptor|endothelial tyrosine kinase|hTIE2|p140 TEK|soluble TIE2 variant 1|soluble TIE2 variant 2|tunica interna endothelial cell kinase|tyrosine kinase with Ig and EGF homology domains-2|tyrosine-protein kinase receptor TEK|tyrosine-protein kinase receptor TIE-2 20121230 -9606 7011 TEP1 - TLP1|TP1|TROVE1|VAULT2|p240 HGNC:11726|MIM:601686|Ensembl:ENSG00000129566|HPRD:03404|Vega:OTTHUMG00000029515 14 14q11.2 telomerase-associated protein 1 protein-coding TEP1 telomerase-associated protein 1 O TROVE domain family, member 1|p80 telomerase homolog|telomerase protein 1|telomerase protein component 1 20121230 -9606 7012 TERC - DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR HGNC:11727|MIM:602322 3 3q26 telomerase RNA component miscRNA TERC telomerase RNA component O - 20121230 -9606 7013 TERF1 - PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 HGNC:11728|MIM:600951|Ensembl:ENSG00000147601|HPRD:02975|Vega:OTTHUMG00000164522 8 8q21.11 telomeric repeat binding factor (NIMA-interacting) 1 protein-coding TERF1 telomeric repeat binding factor (NIMA-interacting) 1 O NIMA-interacting protein 2|TTAGGG repeat-binding factor 1|telomeric protein Pin2/TRF1|telomeric repeat-binding factor 1 20121230 -9606 7014 TERF2 - TRBF2|TRF2 HGNC:11729|MIM:602027|Ensembl:ENSG00000132604|HPRD:03610|Vega:OTTHUMG00000137566 16 16q22.1 telomeric repeat binding factor 2 protein-coding TERF2 telomeric repeat binding factor 2 O TTAGGG repeat-binding factor 2|telomeric DNA-binding protein|telomeric repeat binding protein 2|telomeric repeat-binding factor 2 20121230 -9606 7015 TERT - DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT HGNC:11730|MIM:187270|Ensembl:ENSG00000164362|HPRD:01754|Vega:OTTHUMG00000090357 5 5p15.33 telomerase reverse transcriptase protein-coding TERT telomerase reverse transcriptase O telomerase catalytic subunit|telomerase-associated protein 2 20121230 -9606 7016 TESK1 - - HGNC:11731|MIM:601782|Ensembl:ENSG00000107140|HPRD:03470|Vega:OTTHUMG00000019863 9 9p13 testis-specific kinase 1 protein-coding TESK1 testis-specific kinase 1 O dual specificity testis-specific protein kinase 1|testicular protein kinase 1 20121230 -9606 7018 TF PRO1400 PRO1557|PRO2086|TFQTL1 HGNC:11740|MIM:190000|Ensembl:ENSG00000091513|HPRD:01811|Vega:OTTHUMG00000150356 3 3q22.1 transferrin protein-coding TF transferrin O beta-1 metal-binding globulin|serotransferrin|siderophilin 20121230 -9606 7019 TFAM - MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 HGNC:11741|MIM:600438|Ensembl:ENSG00000108064|HPRD:02702|Vega:OTTHUMG00000018270 10 10q21 transcription factor A, mitochondrial protein-coding TFAM transcription factor A, mitochondrial O mitochondrial transcription factor 1|mitochondrial transcription factor A|transcription factor 6|transcription factor 6-like 1|transcription factor 6-like 2 (mitochondrial transcription factor)|transcription factor 6-like 3 20121230 -9606 7020 TFAP2A RP1-290I10.1 AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 HGNC:11742|MIM:107580|Ensembl:ENSG00000137203|HPRD:00128|Vega:OTTHUMG00000014235 6 6p24 transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) protein-coding TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) O AP-2 transcription factor|AP2-alpha|activating enhancer-binding protein 2-alpha|activator protein 2|transcription factor AP-2-alpha 20121230 -9606 7021 TFAP2B RP4-753D5.1 AP-2B|AP2-B HGNC:11743|MIM:601601|Ensembl:ENSG00000008196|HPRD:03360|Vega:OTTHUMG00000014836 6 6p12 transcription factor AP-2 beta (activating enhancer binding protein 2 beta) protein-coding TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) O AP2-beta|activating enhancer binding protein 2 beta|activating enhancer-binding protein 2-beta|transcription factor AP-2-beta 20121230 -9606 7022 TFAP2C RP4-539E24.1 AP2-GAMMA|ERF1|TFAP2G|hAP-2g HGNC:11744|MIM:601602|Ensembl:ENSG00000087510|HPRD:03361|Vega:OTTHUMG00000032805 20 20q13.2 transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) O activating enhancer-binding protein 2 gamma|estrogen receptor factor 1|transcription factor AP-2 gamma|transcription factor AP-2 gamma (activating enhancer-binding protein 2 gamma)|transcription factor ERF-1 20121230 -9606 7023 TFAP4 - AP-4|bHLHc41 HGNC:11745|MIM:600743|Ensembl:ENSG00000090447|HPRD:11795|Vega:OTTHUMG00000129435 16 16p13 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding TFAP4 transcription factor AP-4 (activating enhancer binding protein 4) O activating enhancer-binding protein 4|class C basic helix-loop-helix protein 41|transcription factor AP-4|transcription factor AP-4 (activating enhancer-binding protein 4) 20121230 -9606 7024 TFCP2 - LBP1C|LSF|LSF1D|SEF|TFCP2C HGNC:11748|MIM:189889|Ensembl:ENSG00000135457|HPRD:01790|Vega:OTTHUMG00000169621 12 12q13 transcription factor CP2 protein-coding TFCP2 transcription factor CP2 O SAA3 enhancer factor|alpha-globin transcription factor CP2 20121230 -9606 7025 NR2F1 - COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 HGNC:7975|MIM:132890|Ensembl:ENSG00000175745|HPRD:00584|Vega:OTTHUMG00000119079 5 5q14 nuclear receptor subfamily 2, group F, member 1 protein-coding NR2F1 nuclear receptor subfamily 2, group F, member 1 O COUP transcription factor 1|COUP transcription factor I|COUP-TF I|COUP-TF1|V-erbA-related protein 3|chicken ovalbumin upstream promoter-transcription factor I|transcription factor COUP 1 (chicken ovalbumin upstream promoter 1, v-erb-a homolog-like 3) 20121230 -9606 7026 NR2F2 - ARP1|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 HGNC:7976|MIM:107773|Ensembl:ENSG00000185551|HPRD:00139|Vega:OTTHUMG00000149848 15 15q26 nuclear receptor subfamily 2, group F, member 2 protein-coding NR2F2 nuclear receptor subfamily 2, group F, member 2 O ADP-ribosylation factor related protein 1|COUP transcription factor 2|COUP transcription factor II|apolipoprotein A-I regulatory protein 1|apolipoprotein AI regulatory protein 1|chicken ovalbumin upstream promoter transcription factor 2|chicken ovalbumin upstream promoter-transcription factor I|chicken ovalbumin upstream promoter-transcription factor II variant 1|chicken ovalbumin upstream promoter-transcription factor II variant 2|chicken ovalbumin upstream promoter-transcription factor II variant 3 20121230 -9606 7027 TFDP1 RP11-230F18.1 DP1|DRTF1|Dp-1 HGNC:11749|MIM:189902|Ensembl:ENSG00000198176|HPRD:01792|Vega:OTTHUMG00000017388 13 13q34 transcription factor Dp-1 protein-coding TFDP1 transcription factor Dp-1 O DRTF1-polypeptide 1|E2F dimerization partner 1|E2F-related transcription factor 20121230 -9606 7029 TFDP2 - DP2 HGNC:11751|MIM:602160|Ensembl:ENSG00000114126|HPRD:03696|Vega:OTTHUMG00000164975 3 3q23 transcription factor Dp-2 (E2F dimerization partner 2) protein-coding TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) O transcription factor Dp-2 20121230 -9606 7030 TFE3 - RCCP2|RCCX1|TFEA|bHLHe33 HGNC:11752|MIM:314310|Ensembl:ENSG00000068323|HPRD:02439|Vega:OTTHUMG00000022690 X Xp11.22 transcription factor binding to IGHM enhancer 3 protein-coding TFE3 transcription factor binding to IGHM enhancer 3 O Transcription factor for IgH enhancer|class E basic helix-loop-helix protein 33|transcription factor E family, member A|transcription factor E3 20121230 -9606 7031 TFF1 - BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2 HGNC:11755|MIM:113710|Ensembl:ENSG00000160182|HPRD:00219|Vega:OTTHUMG00000086799 21 21q22.3 trefoil factor 1 protein-coding TFF1 trefoil factor 1 O breast cancer estrogen-inducible protein|breast cancer estrogen-inducible sequence|gastrointestinal trefoil protein pS2|polypeptide P1.A|protein pS2 20121230 -9606 7032 TFF2 - SML1|SP HGNC:11756|MIM:182590|Ensembl:ENSG00000160181|HPRD:01682|Vega:OTTHUMG00000086797 21 21q22.3 trefoil factor 2 protein-coding TFF2 trefoil factor 2 O spasmolysin|spasmolytic polypeptide|spasmolytic protein 1 20121230 -9606 7033 TFF3 - ITF|P1B|TFI HGNC:11757|MIM:600633|Ensembl:ENSG00000160180|HPRD:02797|Vega:OTTHUMG00000086798 21 21q22.3 trefoil factor 3 (intestinal) protein-coding TFF3 trefoil factor 3 (intestinal) O polypeptide P1.B|trefoil factor 3 20121230 -9606 7035 TFPI - EPI|LACI|TFI|TFPI1 HGNC:11760|MIM:152310|Ensembl:ENSG00000003436|HPRD:01064|Vega:OTTHUMG00000132634 2 2q32 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) protein-coding TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) O anti-convertin|extrinsic pathway inhibitor|tissue factor pathway inhibitor 20121230 -9606 7036 TFR2 - HFE3|TFRC2 HGNC:11762|MIM:604720|Ensembl:ENSG00000106327|HPRD:05282|Vega:OTTHUMG00000159598 7 7q22 transferrin receptor 2 protein-coding TFR2 transferrin receptor 2 O transferrin receptor protein 2 20121230 -9606 7037 TFRC - CD71|T9|TFR|TFR1|TR|TRFR|p90 HGNC:11763|MIM:190010|Ensembl:ENSG00000072274|HPRD:01812|Vega:OTTHUMG00000155714 3 3q29 transferrin receptor (p90, CD71) protein-coding TFRC transferrin receptor (p90, CD71) O transferrin receptor protein 1 20121230 -9606 7038 TG - AITD3|TGN HGNC:11764|MIM:188450|Ensembl:ENSG00000042832|HPRD:01782|Vega:OTTHUMG00000164649 8 8q24 thyroglobulin protein-coding TG thyroglobulin O - 20121230 -9606 7039 TGFA - TFGA HGNC:11765|MIM:190170|Ensembl:ENSG00000163235|HPRD:07522|Vega:OTTHUMG00000129669 2 2p13 transforming growth factor, alpha protein-coding TGFA transforming growth factor, alpha O TGF-alpha|protransforming growth factor alpha 20121230 -9606 7040 TGFB1 - CED|DPD1|LAP|TGFB|TGFbeta HGNC:11766|MIM:190180|Ensembl:ENSG00000105329|HPRD:01821 19 19q13.1 transforming growth factor, beta 1 protein-coding TGFB1 transforming growth factor, beta 1 O TGF-beta 1 protein|TGF-beta-1|latency-associated peptide|transforming growth factor beta-1 20121230 -9606 7041 TGFB1I1 - ARA55|HIC-5|HIC5|TSC-5 HGNC:11767|MIM:602353|Ensembl:ENSG00000140682|HPRD:03831|Vega:OTTHUMG00000132467 16 16p11.2 transforming growth factor beta 1 induced transcript 1 protein-coding TGFB1I1 transforming growth factor beta 1 induced transcript 1 O androgen receptor coactivator 55 kDa protein|androgen receptor coactivator ARA55|androgen receptor-associated protein of 55 kDa|hydrogen peroxide-inducible clone 5 protein|transforming growth factor beta-1-induced transcript 1 protein 20121230 -9606 7042 TGFB2 - LDS4|TGF-beta2 HGNC:11768|MIM:190220|Ensembl:ENSG00000092969|HPRD:01828|Vega:OTTHUMG00000039521 1 1q41 transforming growth factor, beta 2 protein-coding TGFB2 transforming growth factor, beta 2 O BSC-1 cell growth inhibitor|G-TSF|cetermin|glioblastoma-derived T-cell suppressor factor|polyergin|transforming growth factor beta-2 20121230 -9606 7043 TGFB3 - ARVD|TGF-beta3 HGNC:11769|MIM:190230|Ensembl:ENSG00000119699|HPRD:01829|Vega:OTTHUMG00000171489 14 14q24 transforming growth factor, beta 3 protein-coding TGFB3 transforming growth factor, beta 3 O TGF-beta-3|transforming growth factor beta-3 20121230 -9606 7044 LEFTY2 PSEC0024 EBAF|LEFTA|LEFTYA|TGFB4 HGNC:3122|MIM:601877|Ensembl:ENSG00000143768|HPRD:03526|Vega:OTTHUMG00000037441 1 1q42.1 left-right determination factor 2 protein-coding LEFTY2 left-right determination factor 2 O TGF-beta-4|endometrial bleeding-associated factor|left-right determination factor A|protein lefty-2|protein lefty-A|transforming growth factor beta-4 20121230 -9606 7045 TGFBI - BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 HGNC:11771|MIM:601692|Ensembl:ENSG00000120708|HPRD:03409|Vega:OTTHUMG00000163213 5 5q31 transforming growth factor, beta-induced, 68kDa protein-coding TGFBI transforming growth factor, beta-induced, 68kDa O RGD-CAP|RGD-containing collagen-associated protein|beta ig-h3|kerato-epithelin|transforming growth factor-beta-induced protein ig-h3 20121230 -9606 7046 TGFBR1 RP11-96L7.1 AAT5|ACVRLK4|ALK-5|ALK5|LDS1A|LDS2A|MSSE|SKR4|TGFR-1 HGNC:11772|MIM:190181|Ensembl:ENSG00000106799|HPRD:01822|Vega:OTTHUMG00000020353 9 9q22 transforming growth factor, beta receptor 1 protein-coding TGFBR1 transforming growth factor, beta receptor 1 O TGF-beta receptor type I|TGF-beta receptor type-1|TGF-beta type I receptor|activin A receptor type II-like kinase, 53kD|activin A receptor type II-like kinase, 53kDa|activin A receptor type II-like protein kinase of 53kD|activin receptor-like kinase 5|serine/threonine-protein kinase receptor R4|tbetaR-I|transforming growth factor beta receptor I|transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kD)|transforming growth factor-beta receptor type I 20121230 -9606 7047 TGM4 - TGP|hTGP HGNC:11780|MIM:600585|Ensembl:ENSG00000163810|HPRD:08997|Vega:OTTHUMG00000133096 3 3p22-p21.33 transglutaminase 4 (prostate) protein-coding TGM4 transglutaminase 4 (prostate) O TG(P)|TGase P|TGase-4|fibrinoligase|prostate transglutaminase|prostate-specific transglutaminase|protein-glutamine gamma-glutamyltransferase 4|transglutaminase P|transglutaminase-4 20121230 -9606 7048 TGFBR2 - AAT3|FAA3|LDS1B|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII HGNC:11773|MIM:190182|Ensembl:ENSG00000163513|HPRD:01823|Vega:OTTHUMG00000130569 3 3p22 transforming growth factor, beta receptor II (70/80kDa) protein-coding TGFBR2 transforming growth factor, beta receptor II (70/80kDa) O TGF-beta receptor type IIB|TGF-beta receptor type-2|TGF-beta type II receptor|tbetaR-II|transforming growth factor beta receptor type IIC|transforming growth factor, beta receptor II (70/80kDa) isoform 1|transforming growth factor, beta receptor II (70/80kDa) isoform 2 20121230 -9606 7049 TGFBR3 - BGCAN|betaglycan HGNC:11774|MIM:600742|Ensembl:ENSG00000069702|HPRD:02846|Vega:OTTHUMG00000010097 1 1p33-p32 transforming growth factor, beta receptor III protein-coding TGFBR3 transforming growth factor, beta receptor III O TGF-beta receptor type 3|TGF-beta receptor type III|TGFR-3|betaglycan proteoglycan|transforming growth factor beta receptor type 3 20121230 -9606 7050 TGIF1 - HPE4|TGIF HGNC:11776|MIM:602630|Ensembl:ENSG00000177426|HPRD:04023|Vega:OTTHUMG00000131511 18 18p11.3 TGFB-induced factor homeobox 1 protein-coding TGIF1 TGFB-induced factor homeobox 1 O 5'-TG-3' interacting factor|5'-TG-3'-interacting factor 1|TALE homeobox TG-interacting factor|homeobox protein TGIF|homeobox protein TGIF1|transforming growth factor-beta-induced factor 20121230 -9606 7051 TGM1 - ICR2|KTG|LI|LI1|TGASE|TGK HGNC:11777|MIM:190195|Ensembl:ENSG00000092295|HPRD:01824|Vega:OTTHUMG00000029329 14 14q11.2 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) protein-coding TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) O TG(K)|TGase K|TGase-1|epidermal TGase|protein-glutamine gamma-glutamyltransferase K|transglutaminase 1 isoform|transglutaminase K|transglutaminase, keratinocyte|transglutaminase-1 20121230 -9606 7052 TGM2 RP5-1054A22.2 G-ALPHA-h|GNAH|TG2|TGC HGNC:11778|MIM:190196|Ensembl:ENSG00000198959|HPRD:01825|Vega:OTTHUMG00000032437 20 20q12 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) protein-coding TGM2 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) O C polypeptide|TG(C)|TGase C|TGase H|TGase-2|TGase-H|protein-glutamine gamma-glutamyltransferase 2|protein-glutamine-gamma-glutamyltransferase|tissue transglutaminase|transglutaminase C|transglutaminase H|transglutaminase-2 20121230 -9606 7053 TGM3 - TGE HGNC:11779|MIM:600238|Ensembl:ENSG00000125780|HPRD:02584|Vega:OTTHUMG00000031690 20 20q11.2 transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) protein-coding TGM3 transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) O TG(E)|TGase E|TGase-3|protein-glutamine gamma-glutamyltransferase E|transglutaminase E|transglutaminase-3 20121230 -9606 7054 TH - DYT14|DYT5b|TYH HGNC:11782|MIM:191290|Ensembl:ENSG00000180176|HPRD:01865|Vega:OTTHUMG00000009559 11 11p15.5 tyrosine hydroxylase protein-coding TH tyrosine hydroxylase O dystonia 14|tyrosine 3-hydroxylase|tyrosine 3-monooxygenase 20121230 -9606 7055 THAS - TAS HGNC:11783|MIM:313850 X - thoracoabdominal syndrome unknown THAS thoracoabdominal syndrome O - 20120622 -9606 7056 THBD - AHUS6|BDCA3|CD141|THPH12|THRM|TM HGNC:11784|MIM:188040|Ensembl:ENSG00000178726|HPRD:01764|Vega:OTTHUMG00000032053 20 20p11.2 thrombomodulin protein-coding THBD thrombomodulin O CD141 antigen|fetomodulin 20121230 -9606 7057 THBS1 - THBS|THBS-1|TSP|TSP-1|TSP1 HGNC:11785|MIM:188060|Ensembl:ENSG00000137801|HPRD:01765|Vega:OTTHUMG00000133665 15 15q15 thrombospondin 1 protein-coding THBS1 thrombospondin 1 O thrombospondin-1|thrombospondin-1p180 20121230 -9606 7058 THBS2 XXyac-YX65C7_A.1 TSP2 HGNC:11786|MIM:188061|Ensembl:ENSG00000186340|HPRD:01766|Vega:OTTHUMG00000045408 6 6q27 thrombospondin 2 protein-coding THBS2 thrombospondin 2 O thrombospondin-2 20121230 -9606 7059 THBS3 - TSP3 HGNC:11787|MIM:188062|Ensembl:ENSG00000169231|HPRD:01767|Vega:OTTHUMG00000035710 1 1q21 thrombospondin 3 protein-coding THBS3 thrombospondin 3 O thrombospondin-3 20121230 -9606 7060 THBS4 - TSP4 HGNC:11788|MIM:600715|Ensembl:ENSG00000113296|HPRD:02836|Vega:OTTHUMG00000108173 5 5q13 thrombospondin 4 protein-coding THBS4 thrombospondin 4 O thrombospondin-4 20121230 -9606 7062 TCHH RP11-107M16.3 THH|THL|TRHY HGNC:11791|MIM:190370|Ensembl:ENSG00000159450|Vega:OTTHUMG00000013066 1 1q21.3 trichohyalin protein-coding TCHH trichohyalin O - 20121230 -9606 7063 THM - - HGNC:11792|MIM:274230 - - thymoma unknown THM thymoma O - 20110215 -9606 7064 THOP1 - EP24.15|MEPD_HUMAN|MP78|TOP HGNC:11793|MIM:601117|Ensembl:ENSG00000172009|HPRD:03072|Vega:OTTHUMG00000180492 19 19p13.3 thimet oligopeptidase 1 protein-coding THOP1 thimet oligopeptidase 1 O endopeptidase 24.15|thimet oligopeptidase 20121230 -9606 7066 THPO - MGDF|MKCSF|ML|MPLLG|THCYT1|TPO HGNC:11795|MIM:600044|Ensembl:ENSG00000090534|HPRD:02500|Vega:OTTHUMG00000156745 3 3q27 thrombopoietin protein-coding THPO thrombopoietin O MPL ligand|c-mpl ligand|megakaryocyte colony-stimulating factor|megakaryocyte growth and development factor|megakaryocyte stimulating factor|myeloproliferative leukemia virus oncogene ligand|thrombopoietin nirs variant 1 20121230 -9606 7067 THRA - AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 HGNC:11796|MIM:190120|Ensembl:ENSG00000126351|HPRD:07185|Vega:OTTHUMG00000133332 17 17q11.2 thyroid hormone receptor, alpha protein-coding THRA thyroid hormone receptor, alpha O EAR-7|ERBA-related 7|V-erbA-related protein 7|c-erbA-alpha|nuclear receptor subfamily 1 group A member 1|thyroid hormone receptor alpha|thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)|thyroid normone nuclear receptor alpha variant 1|triiodothyronine receptor 20121230 -9606 7068 THRB - C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 HGNC:11799|MIM:190160|Ensembl:ENSG00000151090|HPRD:07521|Vega:OTTHUMG00000130478 3 3p24.2 thyroid hormone receptor, beta protein-coding THRB thyroid hormone receptor, beta O nuclear receptor subfamily 1 group A member 2|oncogene ERBA2|thyroid hormone nuclear receptor beta variant 1|thyroid hormone receptor beta|thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) 20121230 -9606 7069 THRSP - LPGP1|Lpgp|S14|SPOT14|THRP HGNC:11800|MIM:601926|Ensembl:ENSG00000151365|HPRD:03566|Vega:OTTHUMG00000166632 11 11q14.1 thyroid hormone responsive protein-coding THRSP thyroid hormone responsive O SPOT14 homolog|lipogenic protein 1|spot 14 protein|thyroid hormone responsive (SPOT14 homolog, rat)|thyroid hormone responsive SPOT14|thyroid hormone-inducible hepatic protein 20121230 -9606 7070 THY1 - CD90 HGNC:11801|MIM:188230|Ensembl:ENSG00000154096|HPRD:01769|HPRD:11283|Vega:OTTHUMG00000166202 11 11q23.3 Thy-1 cell surface antigen protein-coding THY1 Thy-1 cell surface antigen O CDw90|Thy-1 T-cell antigen|thy-1 antigen|thy-1 membrane glycoprotein 20121230 -9606 7071 KLF10 - EGRA|TIEG|TIEG1 HGNC:11810|MIM:601878|Ensembl:ENSG00000155090|HPRD:03527|Vega:OTTHUMG00000164735 8 8q22.2 Kruppel-like factor 10 protein-coding KLF10 Kruppel-like factor 10 O EGR-alpha|Krueppel-like factor 10|TGFB inducible early growth response|TGFB-inducible early growth response protein 1|TIEG-1|transforming growth factor-beta-inducible early growth response protein 1 20121230 -9606 7072 TIA1 - TIA-1 HGNC:11802|MIM:603518|Ensembl:ENSG00000116001|HPRD:04626|Vega:OTTHUMG00000129644 2 2p13 TIA1 cytotoxic granule-associated RNA binding protein protein-coding TIA1 TIA1 cytotoxic granule-associated RNA binding protein O T-cell-restricted intracellular antigen-1|nucleolysin TIA-1 isoform p40|p40-TIA-1 (containing p15-TIA-1) 20121230 -9606 7073 TIAL1 - TCBP|TIAR HGNC:11804|MIM:603413|Ensembl:ENSG00000151923|HPRD:04563|Vega:OTTHUMG00000019156 10 10q TIA1 cytotoxic granule-associated RNA binding protein-like 1 protein-coding TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 O T-cluster binding protein|TIA-1-related nucleolysin|aging-associated gene 7 protein|nucleolysin TIAR 20121230 -9606 7074 TIAM1 - - HGNC:11805|MIM:600687|Ensembl:ENSG00000156299|HPRD:02820|Vega:OTTHUMG00000084869 21 21q22.11 T-cell lymphoma invasion and metastasis 1 protein-coding TIAM1 T-cell lymphoma invasion and metastasis 1 O T-lymphoma invasion and metastasis-inducing protein 1|TIAM-1|human T-lymphoma invasion and metastasis inducing TIAM1 protein 20121230 -9606 7075 TIE1 RP11-282K6.6 JTK14|TIE HGNC:11809|MIM:600222|Ensembl:ENSG00000066056|HPRD:02572|Vega:OTTHUMG00000007282 1 1p34-p33 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 protein-coding TIE1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 O tyrosine kinase with immunoglobulin and epidermal growth factor homology domains 1|tyrosine-protein kinase receptor Tie-1 20121230 -9606 7076 TIMP1 RP1-230G1.3 CLGI|EPA|EPO|HCI|TIMP HGNC:11820|MIM:305370|Ensembl:ENSG00000102265|HPRD:02371|Vega:OTTHUMG00000021447 X Xp11.3-p11.23 TIMP metallopeptidase inhibitor 1 protein-coding TIMP1 TIMP metallopeptidase inhibitor 1 O TIMP-1|collagenase inhibitor|erythroid potentiating activity|erythroid-potentiating activity|fibroblast collagenase inhibitor|metalloproteinase inhibitor 1|tissue inhibitor of metalloproteinases 1 20121230 -9606 7077 TIMP2 - CSC-21K HGNC:11821|MIM:188825|Ensembl:ENSG00000035862|HPRD:01784|Vega:OTTHUMG00000154517 17 17q25 TIMP metallopeptidase inhibitor 2 protein-coding TIMP2 TIMP metallopeptidase inhibitor 2 O TIMP-2|metalloproteinase inhibitor 2|tissue inhibitor of metalloproteinase 2|tissue inhibitor of metalloproteinases 2 20121230 -9606 7078 TIMP3 RP1-309I22.1 HSMRK222|K222|K222TA2|SFD HGNC:11822|MIM:188826|Ensembl:ENSG00000100234|HPRD:01785|Vega:OTTHUMG00000030784 22 22q12.3 TIMP metallopeptidase inhibitor 3 protein-coding TIMP3 TIMP metallopeptidase inhibitor 3 O MIG-5 protein|TIMP-3|metalloproteinase inhibitor 3|protein MIG-5|tissue inhibitor of metalloproteinases 3 20121230 -9606 7079 TIMP4 - - HGNC:11823|MIM:601915|Ensembl:ENSG00000157150|HPRD:03557|Vega:OTTHUMG00000129763 3 3p25 TIMP metallopeptidase inhibitor 4 protein-coding TIMP4 TIMP metallopeptidase inhibitor 4 O TIMP-4|metalloproteinase inhibitor 4|tissue inhibitor of metalloproteinase 4|tissue inhibitor of metalloproteinases 4 20121230 -9606 7080 NKX2-1 - BCH|BHC|NK-2|NKX2.1|NKX2A|TEBP|TITF1|TTF-1|TTF1 HGNC:11825|MIM:600635|Ensembl:ENSG00000136352|HPRD:02798|Vega:OTTHUMG00000140225 14 14q13 NK2 homeobox 1 protein-coding NKX2-1 NK2 homeobox 1 O NK-2 homolog A|homeobox protein NK-2 homolog A|homeobox protein Nkx-2.1|thyroid nuclear factor 1|thyroid transcription factor 1 20121230 -9606 7082 TJP1 - ZO-1 HGNC:11827|MIM:601009|Ensembl:ENSG00000104067|HPRD:03002|Vega:OTTHUMG00000137397 15 15q13 tight junction protein 1 protein-coding TJP1 tight junction protein 1 O tight junction protein ZO-1|zona occludens 1|zona occludens protein 1|zonula occludens 1 protein|zonula occludens protein 1 20121230 -9606 7083 TK1 - TK2 HGNC:11830|MIM:188300|Ensembl:ENSG00000167900|HPRD:01771|Vega:OTTHUMG00000150674 17 17q23.2-q25.3 thymidine kinase 1, soluble protein-coding TK1 thymidine kinase 1, soluble O thymidine kinase 1 soluble isoform|thymidine kinase, cytosolic|thymidine kinase-1 20121230 -9606 7084 TK2 - MTDPS2|MTTK HGNC:11831|MIM:188250|Ensembl:ENSG00000166548|HPRD:01770|Vega:OTTHUMG00000137499 16 16q22-q23.1 thymidine kinase 2, mitochondrial protein-coding TK2 thymidine kinase 2, mitochondrial O mt-TK 20121230 -9606 7085 TKCR - TKC HGNC:11833|MIM:314300 X Xq28 torticollis, keloids, cryptorchidism and renal dysplasia unknown TKCR torticollis, keloids, cryptorchidism and renal dysplasia O - 20120622 -9606 7086 TKT - TK|TKT1 HGNC:11834|MIM:606781|Ensembl:ENSG00000163931|HPRD:06001|Vega:OTTHUMG00000158192 3 3p14.3 transketolase protein-coding TKT transketolase O - 20121230 -9606 7087 ICAM5 - TLCN|TLN HGNC:5348|MIM:601852|Ensembl:ENSG00000105376|HPRD:03509|Vega:OTTHUMG00000180406 19 19p13.2 intercellular adhesion molecule 5, telencephalin protein-coding ICAM5 intercellular adhesion molecule 5, telencephalin O ICAM-5|intercellular adhesion molecule 5|telencephalin 20121230 -9606 7088 TLE1 RP11-203D19.1 ESG|ESG1|GRG1 HGNC:11837|MIM:600189|Ensembl:ENSG00000196781|HPRD:02557|Vega:OTTHUMG00000021008 9 9q21.32 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) O e(Sp1) homolog|enhancer of split groucho 1|enhancer of split groucho-like protein 1|transducin-like enhancer of split 1, homolog of Drosophila E(sp1)|transducin-like enhancer protein 1 20121230 -9606 7089 TLE2 - ESG|ESG2|GRG2 HGNC:11838|MIM:601041|Ensembl:ENSG00000065717|HPRD:03025|Vega:OTTHUMG00000180613 19 19p13.3 transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) protein-coding TLE2 transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) O enhancer of split groucho 2|enhancer of split groucho-like protein 2|transducin-like enhancer of split 2, homolog of Drosophila E(sp1)|transducin-like enhancer protein 2 20121230 -9606 7090 TLE3 - ESG|ESG3|GRG3|HsT18976 HGNC:11839|MIM:600190|Ensembl:ENSG00000140332|HPRD:02558|Vega:OTTHUMG00000172121 15 15q22 transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) protein-coding TLE3 transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) O enhancer of split groucho 3|enhancer of split groucho-like protein 3|transducin-like enhancer of split 3, homolog of Drosophila E(sp1)|transducin-like enhancer protein 3 20121230 -9606 7091 TLE4 RP11-79D8.3 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4 HGNC:11840|MIM:605132|Ensembl:ENSG00000106829|Vega:OTTHUMG00000020072 9 9q21.31 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) protein-coding TLE4 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) O B lymphocyte gene 1|Protein BCE-1|enhancer of split groucho 4|transducin-like enhancer of split 4, homolog of Drosophila E(sp1)|transducin-like enhancer protein 4 20121230 -9606 7092 TLL1 - ASD6|TLL HGNC:11843|MIM:606742|Ensembl:ENSG00000038295|HPRD:07074|Vega:OTTHUMG00000161112 4 4q32-q33 tolloid-like 1 protein-coding TLL1 tolloid-like 1 O tolloid-like protein 1 20121230 -9606 7093 TLL2 - - HGNC:11844|MIM:606743|Ensembl:ENSG00000095587|HPRD:05993|Vega:OTTHUMG00000018833 10 10q23-q24 tolloid-like 2 protein-coding TLL2 tolloid-like 2 O tolloid-like protein 2 20121230 -9606 7094 TLN1 RP11-112J3.1 ILWEQ|TLN HGNC:11845|MIM:186745|Ensembl:ENSG00000137076|HPRD:01726|Vega:OTTHUMG00000019874 9 9p13 talin 1 protein-coding TLN1 talin 1 O talin-1 20121230 -9606 7095 SEC62 - Dtrp1|HTP1|TLOC1|TP-1 HGNC:11846|MIM:602173|Ensembl:ENSG00000008952|HPRD:03706|Vega:OTTHUMG00000158753 3 3q26.2 SEC62 homolog (S. cerevisiae) protein-coding SEC62 SEC62 homolog (S. cerevisiae) O hTP-1|membrane protein SEC62, S.cerevisiae, homolog of|translocation protein 1|translocation protein SEC62 20121230 -9606 7096 TLR1 - CD281|TIL|TIL. LPRS5|rsc786 HGNC:11847|MIM:601194|Ensembl:ENSG00000174125|HPRD:03119|Vega:OTTHUMG00000160413 4 4p14 toll-like receptor 1 protein-coding TLR1 toll-like receptor 1 O toll/interleukin-1 receptor-like protein 20121230 -9606 7097 TLR2 - CD282|TIL4 HGNC:11848|MIM:603028|HPRD:04323 4 4q32 toll-like receptor 2 protein-coding TLR2 toll-like receptor 2 O toll/interleukin 1 receptor-like 4|toll/interleukin-1 receptor-like protein 4 20121230 -9606 7098 TLR3 - CD283|IIAE2 HGNC:11849|MIM:603029|Ensembl:ENSG00000164342|HPRD:04324|Vega:OTTHUMG00000160345 4 4q35 toll-like receptor 3 protein-coding TLR3 toll-like receptor 3 O - 20121230 -9606 7099 TLR4 - ARMD10|CD284|TLR-4|TOLL HGNC:11850|MIM:603030|Ensembl:ENSG00000136869|HPRD:04325|Vega:OTTHUMG00000021046 9 9q33.1 toll-like receptor 4 protein-coding TLR4 toll-like receptor 4 O hToll|homolog of Drosophila toll 20121230 -9606 7100 TLR5 RP11-239E10.1 SLEB1|TIL3 HGNC:11851|MIM:603031|Ensembl:ENSG00000187554|HPRD:04326|Vega:OTTHUMG00000037937 1 1q41-q42 toll-like receptor 5 protein-coding TLR5 toll-like receptor 5 O toll/interleukin-1 receptor-like protein 3 20121230 -9606 7101 NR2E1 RP3-429G5.1 TLL|TLX|XTLL HGNC:7973|MIM:603849|Ensembl:ENSG00000112333|HPRD:07230|Vega:OTTHUMG00000015319 6 6q21 nuclear receptor subfamily 2, group E, member 1 protein-coding NR2E1 nuclear receptor subfamily 2, group E, member 1 O hTll|nuclear receptor TLX|nuclear receptor subfamily 2 group E member 1|protein tailless homolog|tailes-related receptor|tailless homolog 20121230 -9606 7102 TSPAN7 - A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b HGNC:11854|MIM:300096|Ensembl:ENSG00000156298|Ensembl:ENSG00000250349|HPRD:02107|Vega:OTTHUMG00000024090|Vega:OTTHUMG00000161009 X Xp11.4 tetraspanin 7 protein-coding TSPAN7 tetraspanin 7 O CD231 antigen|T-cell acute lymphoblastic leukemia associated antigen 1|T-cell acute lymphoblastic leukemia-associated antigen 1|cell surface glycoprotein A15|membrane component chromosome X surface marker 1|membrane component, X chromosome, surface marker 1|tetraspanin protein|tetraspanin-7|transmembrane 4 superfamily 2b|transmembrane 4 superfamily member 2|transmembrane protein A15|tspan-7 20121230 -9606 7103 TSPAN8 - CO-029|TM4SF3 HGNC:11855|MIM:600769|Ensembl:ENSG00000127324|HPRD:02865|Vega:OTTHUMG00000169542 12 12q14.1-q21.1 tetraspanin 8 protein-coding TSPAN8 tetraspanin 8 O tetraspanin-8|transmembrane 4 superfamily member 3|tspan-8|tumor-associated antigen CO-029 20121230 -9606 7104 TM4SF4 - ILTMP|il-TMP HGNC:11856|MIM:606567|Ensembl:ENSG00000169903|HPRD:07585|Vega:OTTHUMG00000159619 3 3q25 transmembrane 4 L six family member 4 protein-coding TM4SF4 transmembrane 4 L six family member 4 O intestinal and liver (il) tetraspan membrane protein|intestine and liver tetraspan membrane protein|transmembrane 4 L6 family member 4|transmembrane 4 superfamily member 4 20121230 -9606 7105 TSPAN6 UNQ767/PRO1560 T245|TM4SF6|TSPAN-6 HGNC:11858|MIM:300191|Ensembl:ENSG00000000003|HPRD:02179|Vega:OTTHUMG00000022002 X Xq22 tetraspanin 6 protein-coding TSPAN6 tetraspanin 6 O A15 homolog|putative NF-kappa-B-activating protein 321|tetraspan TM4SF|tetraspanin TM4-D|tetraspanin-6|transmembrane 4 superfamily member 6 20121230 -9606 7106 TSPAN4 - NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4 HGNC:11859|MIM:602644|Ensembl:ENSG00000214063|HPRD:04033|Vega:OTTHUMG00000133305 11 11p15.5 tetraspanin 4 protein-coding TSPAN4 tetraspanin 4 O novel antigen 2|tetraspan TM4SF|tetraspanin-4|transmembrane 4 superfamily member 7 20121230 -9606 7107 GPR137B RP5-985L19.1 TM7SF1 HGNC:11862|MIM:604658|Ensembl:ENSG00000077585|HPRD:06878|Vega:OTTHUMG00000037994 1 1q42-q43 G protein-coupled receptor 137B protein-coding GPR137B G protein-coupled receptor 137B O integral membrane protein GPR137B|transmembrane 7 superfamily member 1 (upregulated in kidney)|transmembrane 7 superfamily member 1 protein 20121230 -9606 7108 TM7SF2 - ANG1|DHCR14A|NET47 HGNC:11863|MIM:603414|Ensembl:ENSG00000149809|HPRD:04564|Vega:OTTHUMG00000165603 11 11q13 transmembrane 7 superfamily member 2 protein-coding TM7SF2 transmembrane 7 superfamily member 2 O C-14 sterol reductase|another new gene 1 protein|delta(14)-sterol reductase|delta-14-SR|putative sterol reductase SR-1|sterol C14-reductase 20121230 -9606 7109 TRAPPC10 - EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 HGNC:11868|MIM:602103|Ensembl:ENSG00000160218|HPRD:03656|Vega:OTTHUMG00000086894 21 21q22.3 trafficking protein particle complex 10 protein-coding TRAPPC10 trafficking protein particle complex 10 O TRAPP 130 kDa subunit|TRAPP subunit TMEM1|epilepsy holoprosencephaly candidate 1 protein|epilepsy holoprosencephaly candidate-1 protein|trafficking protein particle complex subunit 10|trafficking protein particle complex subunit 130|trafficking protein particle complex subunit TMEM1|transmembrane protein 1|transport protein particle subunit TMEM1 20121230 -9606 7110 TMF1 - ARA160|TMF HGNC:11870|MIM:601126|Ensembl:ENSG00000144747|HPRD:03081|Vega:OTTHUMG00000158771 3 3p21-p12 TATA element modulatory factor 1 protein-coding TMF1 TATA element modulatory factor 1 O TATA element modulatory factor|androgen receptor coactivator 160 kDa protein|androgen receptor-associated protein of 160 kDa 20121230 -9606 7111 TMOD1 RP11-244N9.1 D9S57E|ETMOD|TMOD HGNC:11871|MIM:190930|Ensembl:ENSG00000136842|HPRD:01838|Vega:OTTHUMG00000020325 9 9q22.3 tropomodulin 1 protein-coding TMOD1 tropomodulin 1 O E-Tmod|e-tropomodulin|erythrocyte tropomodulin|tropomodulin-1 20121230 -9606 7112 TMPO - CMD1T|LAP2|LEMD4|PRO0868|TP HGNC:11875|MIM:188380|Ensembl:ENSG00000120802|HPRD:01777|Vega:OTTHUMG00000170210 12 12q22 thymopoietin protein-coding TMPO thymopoietin O LEM domain containing 4|TP alpha|TP beta/gamma|lamina-associated polypeptide 2|thymopoietin-related peptide isoform alpha|thymopoietin-related peptide isoforms beta/gamma 20121230 -9606 7113 TMPRSS2 - PP9284|PRSS10 HGNC:11876|MIM:602060|Ensembl:ENSG00000184012|HPRD:03637|Vega:OTTHUMG00000086762 21 21q22.3 transmembrane protease, serine 2 protein-coding TMPRSS2 transmembrane protease, serine 2 O epitheliasin|serine protease 10|transmembrane protease serine 2 20121230 -9606 7114 TMSB4X - FX|PTMB4|TB4X|TMSB4 HGNC:11881|MIM:300159|Ensembl:ENSG00000205542|HPRD:02153|Vega:OTTHUMG00000021144 X Xq21.3-q22 thymosin beta 4, X-linked protein-coding TMSB4X thymosin beta 4, X-linked O prothymosin beta-4|t beta-4|thymosin beta-4|thymosin, beta 4, X chromosome 20121230 -9606 7115 TMSB4XP1 - TMSL1 HGNC:11883|HPRD:10271 1 1p34.2 thymosin beta 4, X-linked pseudogene 1 pseudo TMSB4XP1 thymosin beta 4, X-linked pseudogene 1 O - 20121230 -9606 7116 TMSB4XP2 - TMSL2 HGNC:11884|HPRD:10272 2 2p25.3 thymosin beta 4, X-linked pseudogene 2 pseudo TMSB4XP2 thymosin beta 4, X-linked pseudogene 2 O - 20121230 -9606 7117 TMSB4XP8 - TMSL3 HGNC:11885|HPRD:10273 4 4q22.1 thymosin beta 4, X-linked pseudogene 8 pseudo TMSB4XP8 thymosin beta 4, X-linked pseudogene 8 O - 20121230 -9606 7118 TMSB4XP4 - TMSL4 HGNC:11886|HPRD:10274 9 9q34.11 thymosin beta 4, X-linked pseudogene 4 pseudo TMSB4XP4 thymosin beta 4, X-linked pseudogene 4 O - 20121230 -9606 7119 TMSB4XP5 - TMSL5 HGNC:11887 11 11q12.3 thymosin beta 4, X-linked pseudogene 5 pseudo TMSB4XP5 thymosin beta 4, X-linked pseudogene 5 O - 20121230 -9606 7120 TMSB4XP6 - TMSB4L|TMSL6 HGNC:11888|HPRD:10275 20 20q13.13 thymosin beta 4, X-linked pseudogene 6 pseudo TMSB4XP6 thymosin beta 4, X-linked pseudogene 6 O - 20121230 -9606 7121 TMSB4XP7 - TMSL7 HGNC:11889 X Xq23 thymosin beta 4, X-linked pseudogene 7 pseudo TMSB4XP7 thymosin beta 4, X-linked pseudogene 7 O - 20121230 -9606 7122 CLDN5 - AWAL|BEC1|CPETRL1|TMVCF HGNC:2047|MIM:602101|Ensembl:ENSG00000184113|HPRD:03654|Vega:OTTHUMG00000150441 22 22q11.21 claudin 5 protein-coding CLDN5 claudin 5 O TMDVCF|claudin-5|transmembrane protein deleted in VCFS|transmembrane protein deleted in velocardiofacial syndrome 20121230 -9606 7123 CLEC3B - TN|TNA HGNC:11891|MIM:187520|Ensembl:ENSG00000163815|HPRD:01759|Vega:OTTHUMG00000133087 3 3p22-p21.3 C-type lectin domain family 3, member B protein-coding CLEC3B C-type lectin domain family 3, member B O plasminogen kringle 4-binding protein|tetranectin|tetranectin (plasminogen binding protein)|tetranectin (plasminogen-binding protein) 20121230 -9606 7124 TNF DADB-70P7.1 DIF|TNF-alpha|TNFA|TNFSF2 HGNC:11892|MIM:191160|Ensembl:ENSG00000232810|HPRD:01855|Vega:OTTHUMG00000031194 6 6p21.3 tumor necrosis factor protein-coding TNF tumor necrosis factor O APC1 protein|TNF, macrophage-derived|TNF, monocyte-derived|TNF-a|cachectin|tumor necrosis factor ligand superfamily member 2|tumor necrosis factor-alpha 20121230 -9606 7125 TNNC2 - - HGNC:11944|MIM:191039|Ensembl:ENSG00000101470|HPRD:08929|Vega:OTTHUMG00000032623 20 20q12-q13.11 troponin C type 2 (fast) protein-coding TNNC2 troponin C type 2 (fast) O troponin C, skeletal muscle|troponin C2, fast 20121230 -9606 7126 TNFAIP1 - B12|B61|EDP1|hBACURD2 HGNC:11894|MIM:191161|Ensembl:ENSG00000109079|HPRD:01856|Vega:OTTHUMG00000132501 17 17q22-q23 tumor necrosis factor, alpha-induced protein 1 (endothelial) protein-coding TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) O BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2|BTB/POZ domain-containing protein TNFAIP1 20121230 -9606 7127 TNFAIP2 - B94|EXOC3L3 HGNC:11895|MIM:603300|Ensembl:ENSG00000185215|HPRD:04487|Vega:OTTHUMG00000171890 14 14q32 tumor necrosis factor, alpha-induced protein 2 protein-coding TNFAIP2 tumor necrosis factor, alpha-induced protein 2 O TNF alpha-induced protein 2|exocyst complex component 3-like 3|primary response gene B94 protein|tumor necrosis factor alpha-induced protein 2 20121230 -9606 7128 TNFAIP3 RP11-356I2.3 A20|OTUD7C|TNFA1P2 HGNC:11896|MIM:191163|Ensembl:ENSG00000118503|HPRD:01857|Vega:OTTHUMG00000015664 6 6q23 tumor necrosis factor, alpha-induced protein 3 protein-coding TNFAIP3 tumor necrosis factor, alpha-induced protein 3 O OTU domain-containing protein 7C|TNF alpha-induced protein 3|putative DNA-binding protein A20|tumor necrosis factor alpha-induced protein 3|tumor necrosis factor inducible protein A20|zinc finger protein A20 20121230 -9606 7130 TNFAIP6 - TSG-6|TSG6 HGNC:11898|MIM:600410|Ensembl:ENSG00000123610|HPRD:02680|Vega:OTTHUMG00000131884 2 2q23.3 tumor necrosis factor, alpha-induced protein 6 protein-coding TNFAIP6 tumor necrosis factor, alpha-induced protein 6 O TNF alpha-induced protein 6|TNF-stimulated gene 6 protein|hyaluronate-binding protein|tumor necrosis factor alpha-inducible protein 6|tumor necrosis factor-inducible gene 6 protein|tumor necrosis factor-stimulated gene-6 protein 20121230 -9606 7132 TNFRSF1A - CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60 HGNC:11916|MIM:191190|Ensembl:ENSG00000067182|HPRD:01861|Vega:OTTHUMG00000168267 12 12p13.2 tumor necrosis factor receptor superfamily, member 1A protein-coding TNFRSF1A tumor necrosis factor receptor superfamily, member 1A O TNF-R1|TNF-RI|TNFR-I|tumor necrosis factor binding protein 1|tumor necrosis factor receptor 1A isoform beta|tumor necrosis factor receptor superfamily member 1A|tumor necrosis factor receptor type 1|tumor necrosis factor-alpha receptor 20121230 -9606 7133 TNFRSF1B - CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR HGNC:11917|MIM:191191|Ensembl:ENSG00000028137|HPRD:01862|Vega:OTTHUMG00000001829 1 1p36.22 tumor necrosis factor receptor superfamily, member 1B protein-coding TNFRSF1B tumor necrosis factor receptor superfamily, member 1B O TNF-R2|TNF-RII|p75 TNF receptor|p80 TNF-alpha receptor|soluble TNFR1B variant 1|tumor necrosis factor beta receptor|tumor necrosis factor binding protein 2|tumor necrosis factor receptor 2|tumor necrosis factor receptor superfamily member 1B|tumor necrosis factor receptor type II 20121230 -9606 7134 TNNC1 - CMD1Z|CMH13|TN-C|TNC|TNNC HGNC:11943|MIM:191040|Ensembl:ENSG00000114854|HPRD:08930|Vega:OTTHUMG00000158572 3 3p21.1 troponin C type 1 (slow) protein-coding TNNC1 troponin C type 1 (slow) O cardiac troponin C|slow twitch skeletal/cardiac muscle troponin C|troponin C, slow skeletal and cardiac muscles|troponin C1, slow 20121230 -9606 7135 TNNI1 - SSTNI|TNN1 HGNC:11945|MIM:191042|Ensembl:ENSG00000159173|HPRD:01842|Vega:OTTHUMG00000035736 1 1q31.3 troponin I type 1 (skeletal, slow) protein-coding TNNI1 troponin I type 1 (skeletal, slow) O troponin I, slow skeletal muscle|troponin I, slow-twitch isoform 20121230 -9606 7136 TNNI2 - AMCD2B|DA2B|FSSV|fsTnI HGNC:11946|MIM:191043|Ensembl:ENSG00000130598|HPRD:01843|Vega:OTTHUMG00000012253 11 11p15.5 troponin I type 2 (skeletal, fast) protein-coding TNNI2 troponin I type 2 (skeletal, fast) O fast-twitch skeletal muscle troponin I|troponin I fast twitch 2|troponin I, fast skeletal muscle|troponin I, fast-twitch isoform|troponin I, fast-twitch skeletal muscle isoform|troponin I, skeletal, fast 20121230 -9606 7137 TNNI3 - CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI HGNC:11947|MIM:191044|Ensembl:ENSG00000129991|HPRD:11769|Vega:OTTHUMG00000180589 19 19q13.4 troponin I type 3 (cardiac) protein-coding TNNI3 troponin I type 3 (cardiac) O troponin I, cardiac muscle 20121230 -9606 7138 TNNT1 - ANM|NEM5|STNT|TNT|TNTS HGNC:11948|MIM:191041|Ensembl:ENSG00000105048|HPRD:01841|Vega:OTTHUMG00000180542 19 19q13.4 troponin T type 1 (skeletal, slow) protein-coding TNNT1 troponin T type 1 (skeletal, slow) O nemaline myopathy type 5|slow skeletal muscle troponin T|troponin T, slow skeletal muscle|troponin-T1, skeletal, slow 20121230 -9606 7139 TNNT2 - CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT HGNC:11949|MIM:191045|Ensembl:ENSG00000118194|HPRD:01844|Vega:OTTHUMG00000035733 1 1q32 troponin T type 2 (cardiac) protein-coding TNNT2 troponin T type 2 (cardiac) O cardiac muscle troponin T|cardiomyopathy, dilated 1D (autosomal dominant)|cardiomyopathy, hypertrophic 2|troponin T, cardiac muscle|troponin T2, cardiac 20121230 -9606 7140 TNNT3 - TNTF HGNC:11950|MIM:600692|Ensembl:ENSG00000130595|HPRD:02822|Vega:OTTHUMG00000012475 11 11p15.5 troponin T type 3 (skeletal, fast) protein-coding TNNT3 troponin T type 3 (skeletal, fast) O beta TnTF|beta-TnTF|fTnT|fast skeletal muscle troponin T|troponin T, fast skeletal muscle|troponin-T3, skeletal, fast 20121230 -9606 7141 TNP1 - TP1 HGNC:11951|MIM:190231|Ensembl:ENSG00000118245|HPRD:01830|Vega:OTTHUMG00000133057 2 2q35-q36 transition protein 1 (during histone to protamine replacement) protein-coding TNP1 transition protein 1 (during histone to protamine replacement) O STP-1|TP-1|spermatid nuclear transition protein 1 20121230 -9606 7142 TNP2 - TP2 HGNC:11952|MIM:190232|Ensembl:ENSG00000178279|HPRD:01831|Vega:OTTHUMG00000172315 16 16p13.13 transition protein 2 (during histone to protamine replacement) protein-coding TNP2 transition protein 2 (during histone to protamine replacement) O TP-2|nuclear transition protein 2 20121230 -9606 7143 TNR RP3-518E13.1 TN-R HGNC:11953|MIM:601995|Ensembl:ENSG00000116147|HPRD:03589|Vega:OTTHUMG00000034876 1 1q24 tenascin R protein-coding TNR tenascin R O janusin|restrictin|tenascin R (restrictin, janusin)|tenascin-R 20121230 -9606 7144 TNR1 - - HGNC:11954 X - Turner syndrome 1 unknown TNR1 Turner syndrome 1 O - 20110215 -9606 7145 TNS1 MSTP091 MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|TNS HGNC:11973|MIM:600076|Ensembl:ENSG00000079308|HPRD:02512|Vega:OTTHUMG00000133056 2 2q35-q36 tensin 1 protein-coding TNS1 tensin 1 O Matrix-remodelling-associated protein 6|matrix-remodelling associated 6|tensin-1 20121230 -9606 7146 TNXA - D6S103E|HXBL|TNX|XA HGNC:11975 6 6p21.3 tenascin XA (pseudogene) pseudo TNXA tenascin XA (pseudogene) O - 20121230 -9606 7148 TNXB DAAP-193O6.1 EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS HGNC:11976|MIM:600985|Ensembl:ENSG00000168477|HPRD:02993|Vega:OTTHUMG00000031088 6 6p21.3 tenascin XB protein-coding TNXB tenascin XB O growth-inhibiting protein 45|hexabrachion-like protein|tenascin XB1|tenascin XB2|tenascin-X 20121230 -9606 7149 TOC - TEC|TOCG HGNC:11981|MIM:148500 17 - tylosis with oesophageal cancer unknown TOC tylosis with oesophageal cancer O - 20121220 -9606 7150 TOP1 RP3-511B24.1 TOPI HGNC:11986|MIM:126420|Ensembl:ENSG00000198900|HPRD:00535|Vega:OTTHUMG00000033057 20 20q12-q13.1 topoisomerase (DNA) I protein-coding TOP1 topoisomerase (DNA) I O DNA topoisomerase 1|type I DNA topoisomerase 20121230 -9606 7151 TOP1P1 - - HGNC:11987 1 1q23-q24 topoisomerase (DNA) I pseudogene 1 pseudo TOP1P1 topoisomerase (DNA) I pseudogene 1 O - 20121230 -9606 7152 TOP1P2 - - HGNC:11988 22 22q11.23 topoisomerase (DNA) I pseudogene 2 pseudo TOP1P2 topoisomerase (DNA) I pseudogene 2 O - 20121230 -9606 7153 TOP2A - TOP2|TP2A HGNC:11989|MIM:126430|Ensembl:ENSG00000131747|HPRD:00536|Vega:OTTHUMG00000155008 17 17q21-q22 topoisomerase (DNA) II alpha 170kDa protein-coding TOP2A topoisomerase (DNA) II alpha 170kDa O DNA gyrase|DNA topoisomerase (ATP-hydrolyzing)|DNA topoisomerase 2-alpha|DNA topoisomerase II, 170 kD|DNA topoisomerase II, alpha isozyme 20121230 -9606 7154 TRNAA1 - TRAN HGNC:12098|MIM:601431 6 6p22.1 transfer RNA alanine 1 (anticodon UGC) tRNA TRNAA1 transfer RNA alanine 1 (anticodon UGC) O - 20121230 -9606 7155 TOP2B - TOPIIB|top2beta HGNC:11990|MIM:126431|Ensembl:ENSG00000077097|HPRD:00537|Vega:OTTHUMG00000155596 3 3p24 topoisomerase (DNA) II beta 180kDa protein-coding TOP2B topoisomerase (DNA) II beta 180kDa O DNA topoisomerase 2-beta|DNA topoisomerase II beta|DNA topoisomerase II, 180 kD|DNA topoisomerase II, beta isozyme|U937 associated antigen|antigen MLAA-44|topo II beta|topoisomerase II beta|topoisomerase IIb 20121230 -9606 7156 TOP3A - TOP3 HGNC:11992|MIM:601243|Ensembl:ENSG00000177302|HPRD:03145|Vega:OTTHUMG00000059391 17 17p12-p11.2 topoisomerase (DNA) III alpha protein-coding TOP3A topoisomerase (DNA) III alpha O DNA topoisomerase 3-alpha|DNA topoisomerase III alpha|topo III-alpha 20121230 -9606 7157 TP53 - BCC7|LFS1|P53|TRP53 HGNC:11998|MIM:191170|Ensembl:ENSG00000141510|HPRD:01859|Vega:OTTHUMG00000162125 17 17p13.1 tumor protein p53 protein-coding TP53 tumor protein p53 O antigen NY-CO-13|cellular tumor antigen p53|p53 tumor suppressor|phosphoprotein p53|transformation-related protein 53 20121230 -9606 7158 TP53BP1 - 53BP1|p202 HGNC:11999|MIM:605230|Ensembl:ENSG00000067369|HPRD:05569|Vega:OTTHUMG00000059757 15 15q15-q21 tumor protein p53 binding protein 1 protein-coding TP53BP1 tumor protein p53 binding protein 1 O p53-binding protein 1|p53BP1|tumor protein 53-binding protein, 1|tumor protein p53-binding protein, 1|tumor suppressor p53-binding protein 1 20121230 -9606 7159 TP53BP2 - 53BP2|ASPP2|BBP|P53BP2|PPP1R13A HGNC:12000|MIM:602143|Ensembl:ENSG00000143514|HPRD:11803|Vega:OTTHUMG00000037379 1 1q41 tumor protein p53 binding protein, 2 protein-coding TP53BP2 tumor protein p53 binding protein, 2 O BCL2-binding protein|apoptosis-stimulating of p53 protein 2|apoptosis-stimulating protein of p53, 2|renal carcinoma antigen NY-REN-51|tumor suppressor p53-binding protein 2 20121230 -9606 7161 TP73 - P73 HGNC:12003|MIM:601990|Ensembl:ENSG00000078900|HPRD:03587|Vega:OTTHUMG00000000610 1 1p36.3 tumor protein p73 protein-coding TP73 tumor protein p73 O p53-like transcription factor|p53-related protein 20121230 -9606 7162 TPBG - 5T4|5T4AG|M6P1 HGNC:12004|MIM:190920|Ensembl:ENSG00000146242|HPRD:01837 6 6q14-q15 trophoblast glycoprotein protein-coding TPBG trophoblast glycoprotein O 5T4 oncofetal antigen|5T4 oncofetal trophoblast glycoprotein|5T4 oncotrophoblast glycoprotein 20121230 -9606 7163 TPD52 - D52|N8L|PC-1|PrLZ|hD52 HGNC:12005|MIM:604068|Ensembl:ENSG00000076554|HPRD:04963|Vega:OTTHUMG00000164565 8 8q21 tumor protein D52 protein-coding TPD52 tumor protein D52 O prostate and colon associated protein|prostate leucine zipper|protein N8 20121230 -9606 7164 TPD52L1 - D53|hD53 HGNC:12006|MIM:604069|Ensembl:ENSG00000111907|HPRD:07236|Vega:OTTHUMG00000015505 6 6q22-q23 tumor protein D52-like 1 protein-coding TPD52L1 tumor protein D52-like 1 O tumor protein D53 20121230 -9606 7165 TPD52L2 RP4-591C20.2 D54 HGNC:12007|MIM:603747|Ensembl:ENSG00000101150|HPRD:11947|Vega:OTTHUMG00000033009 20 20q13.2-q13.3 tumor protein D52-like 2 protein-coding TPD52L2 tumor protein D52-like 2 O HCCR-binding protein 2|tumor protein D54 20121230 -9606 7166 TPH1 - TPRH|TRPH HGNC:12008|MIM:191060|Ensembl:ENSG00000129167|HPRD:01846|Vega:OTTHUMG00000166421 11 11p15.3-p14 tryptophan hydroxylase 1 protein-coding TPH1 tryptophan hydroxylase 1 O L-tryptophan hydroxylase|indoleacetic acid-5-hydroxylase|tryptophan 5-hydroxylase 1|tryptophan 5-monooxygenase 1|tryptophan hydroxylase (tryptophan 5-monooxygenase) 20121230 -9606 7167 TPI1 - TIM|TPI HGNC:12009|MIM:190450|Ensembl:ENSG00000111669|HPRD:01833|Vega:OTTHUMG00000133767 12 12p13 triosephosphate isomerase 1 protein-coding TPI1 triosephosphate isomerase 1 O triose-phosphate isomerase|triosephosphate isomerase 20121230 -9606 7168 TPM1 - C15orf13|CMD1Y|CMH3|HTM-alpha|TMSA HGNC:12010|MIM:191010|Ensembl:ENSG00000140416|HPRD:01839|Vega:OTTHUMG00000132803 15 15q22.1 tropomyosin 1 (alpha) protein-coding TPM1 tropomyosin 1 (alpha) O alpha-tropomyosin|cardiomyopathy, hypertrophic 3|sarcomeric tropomyosin kappa|tropomyosin 1 (alpha) isoform 1|tropomyosin 1 (alpha) isoform 2|tropomyosin 1 (alpha) isoform 3|tropomyosin 1 (alpha) isoform 4|tropomyosin 1 (alpha) isoform 5|tropomyosin 1 (alpha) isoform 6|tropomyosin 1 (alpha) isoform 7|tropomyosin alpha-1 chain 20121230 -9606 7169 TPM2 RP11-112J3.4 AMCD1|DA1|DA2B|NEM4|TMSB HGNC:12011|MIM:190990|Ensembl:ENSG00000198467|HPRD:11768|Vega:OTTHUMG00000019878 9 9p13 tropomyosin 2 (beta) protein-coding TPM2 tropomyosin 2 (beta) O nemaline myopathy type 4|tropomyosin beta chain|tropomyosin-2 20121230 -9606 7170 TPM3 RP11-205M9.1 CFTD|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPMsk3|TRK|hTM5|hscp30 HGNC:12012|MIM:191030|Ensembl:ENSG00000143549|HPRD:01840|Vega:OTTHUMG00000035853 1 1q21.2 tropomyosin 3 protein-coding TPM3 tropomyosin 3 O cytoskeletal tropomyosin TM30|heat-stable cytoskeletal protein 30 kDa|tropomyosin alpha-3 chain|tropomyosin gamma|tropomyosin-5 20121230 -9606 7171 TPM4 - - HGNC:12013|MIM:600317|Ensembl:ENSG00000167460|HPRD:11734|Vega:OTTHUMG00000182134 19 19p13.1 tropomyosin 4 protein-coding TPM4 tropomyosin 4 O TM30p1|tropomyosin alpha-4 chain|tropomyosin-4 20121230 -9606 7172 TPMT - - HGNC:12014|MIM:187680|Ensembl:ENSG00000137364|HPRD:01760|Vega:OTTHUMG00000014317 6 6p22.3 thiopurine S-methyltransferase protein-coding TPMT thiopurine S-methyltransferase O S-adenosyl-L-methionine:thiopurine S-methyltransferase 20121230 -9606 7173 TPO - MSA|TDH2A|TPX HGNC:12015|MIM:606765|Ensembl:ENSG00000115705|HPRD:06000|Vega:OTTHUMG00000090271 2 2p25 thyroid peroxidase protein-coding TPO thyroid peroxidase O thyroid microsomal antigen|thyroperoxidase 20121230 -9606 7174 TPP2 RP11-29B2.2 TPP-2 HGNC:12016|MIM:190470|Ensembl:ENSG00000134900|HPRD:01834|Vega:OTTHUMG00000017305 13 13q32-q33 tripeptidyl peptidase II protein-coding TPP2 tripeptidyl peptidase II O TPP-II|tripeptidyl aminopeptidase|tripeptidyl-peptidase 2|tripeptidyl-peptidase II 20121230 -9606 7175 TPR - - HGNC:12017|MIM:189940|Ensembl:ENSG00000047410|HPRD:08927|Vega:OTTHUMG00000035580 1 1q25 translocated promoter region, nuclear basket protein protein-coding TPR translocated promoter region, nuclear basket protein O nuclear pore complex-associated protein TPR|nucleoprotein TPR|translocated promoter region (to activated MET oncogene)|tumor potentiating region 20121230 -9606 7177 TPSAB1 - TPS1|TPS2|TPSB1 HGNC:12019|MIM:191080|Ensembl:ENSG00000172236|HPRD:01848|HPRD:01849|Vega:OTTHUMG00000090467 16 16p13.3 tryptase alpha/beta 1 protein-coding TPSAB1 tryptase alpha/beta 1 O mast cell alpha II tryptase|mast cell beta I tryptase|tryptase I|tryptase alpha II|tryptase alpha-1|tryptase alpha/beta-1|tryptase beta 1|tryptase beta I|tryptase beta-1|tryptase-1|tryptase-I|tryptase-III 20121230 -9606 7178 TPT1 RP11-290D2.1 HRF|TCTP|p02 HGNC:12022|MIM:600763|Ensembl:ENSG00000133112|HPRD:15979|Vega:OTTHUMG00000016845 13 13q14 tumor protein, translationally-controlled 1 protein-coding TPT1 tumor protein, translationally-controlled 1 O fortilin|histamine-releasing factor|p23|translationally-controlled tumor protein 20121230 -9606 7179 TPTE - CT44|PTEN2 HGNC:12023|MIM:604336|Ensembl:ENSG00000166157|HPRD:05064|Vega:OTTHUMG00000074127 21 21p11 transmembrane phosphatase with tensin homology protein-coding TPTE transmembrane phosphatase with tensin homology O PTEN-related tyrosine phosphatase|cancer/testis antigen 44|putative tyrosine-protein phosphatase TPTE|tensin, putative protein-tyrosine phosphatase|tumor antigen BJ-HCC-5 20121230 -9606 7180 CRISP2 - CRISP-2|CT36|GAPDL5|TPX1|TSP1 HGNC:12024|MIM:187430|Ensembl:ENSG00000124490|HPRD:01758|Vega:OTTHUMG00000014822 6 6p12.3 cysteine-rich secretory protein 2 protein-coding CRISP2 cysteine-rich secretory protein 2 O cancer/testis antigen 36|glyceraldehyde-3-phosphate dehydrogenase-like 5|testis specific protein 1 (probe H4-1 p3-1)|testis-specific protein TPX-1 20121230 -9606 7181 NR2C1 - TR2 HGNC:7971|MIM:601529|Ensembl:ENSG00000120798|HPRD:03318|Vega:OTTHUMG00000170131 12 12q22 nuclear receptor subfamily 2, group C, member 1 protein-coding NR2C1 nuclear receptor subfamily 2, group C, member 1 O TR2 nuclear hormone receptor|nuclear receptor subfamily 2 group C member 1|nuclear receptor subfamily 2, group C isoform|orphan nuclear receptor TR2 20121230 -9606 7182 NR2C2 - TAK1|TR2R1|TR4|hTAK1 HGNC:7972|MIM:601426|Ensembl:ENSG00000177463|HPRD:03253|Vega:OTTHUMG00000129839 3 3p25 nuclear receptor subfamily 2, group C, member 2 protein-coding NR2C2 nuclear receptor subfamily 2, group C, member 2 O Nuclear hormone receptor TR4|TR4 nuclear hormone receptor|nuclear receptor subfamily 2 group C member 2|orphan nuclear receptor TAK1|orphan nuclear receptor TR4|testicular nuclear receptor 4|testicular receptor 4 20121230 -9606 7183 TRNAC1 - TRC HGNC:12250 17 17q12 transfer RNA cysteine 1 (anticodon GCA) tRNA TRNAC1 transfer RNA cysteine 1 (anticodon GCA) O - 20110927 -9606 7184 HSP90B1 - ECGP|GP96|GRP94|TRA1 HGNC:12028|MIM:191175|Ensembl:ENSG00000166598|HPRD:01860|Vega:OTTHUMG00000170118 12 12q24.2-q24.3 heat shock protein 90kDa beta (Grp94), member 1 protein-coding HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 O 94 kDa glucose-regulated protein|endoplasmin|endothelial cell (HBMEC) glycoprotein|heat shock protein 90 kDa beta member 1|stress-inducible tumor rejection antigen gp96|tumor rejection antigen (gp96) 1|tumor rejection antigen 1 20121230 -9606 7185 TRAF1 - EBI6|MGC:10353 HGNC:12031|MIM:601711|Ensembl:ENSG00000056558|HPRD:03418|Vega:OTTHUMG00000020578 9 9q33-q34 TNF receptor-associated factor 1 protein-coding TRAF1 TNF receptor-associated factor 1 O Epstein-Bar virus-induced protein 6 20121230 -9606 7186 TRAF2 - MGC:45012|TRAP|TRAP3 HGNC:12032|MIM:601895|Ensembl:ENSG00000127191|HPRD:03538|Vega:OTTHUMG00000020952 9 9q34 TNF receptor-associated factor 2 protein-coding TRAF2 TNF receptor-associated factor 2 O E3 ubiquitin-protein ligase TRAF2|tumor necrosis factor type 2 receptor associated protein 3|tumor necrosis factor type 2 receptor-associated protein 3 20121230 -9606 7187 TRAF3 - CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1 HGNC:12033|MIM:601896|Ensembl:ENSG00000131323|HPRD:03539|Vega:OTTHUMG00000171902 14 14q32.32 TNF receptor-associated factor 3 protein-coding TRAF3 TNF receptor-associated factor 3 O CD40 associated protein 1|CD40 binding protein|CD40 receptor associated factor 1|LMP1-associated protein 1 20121230 -9606 7188 TRAF5 RP11-318L16.2 MGC:39780|RNF84 HGNC:12035|MIM:602356|Ensembl:ENSG00000082512|HPRD:03834|Vega:OTTHUMG00000036997 1 1q32 TNF receptor-associated factor 5 protein-coding TRAF5 TNF receptor-associated factor 5 O RING finger protein 84 20121230 -9606 7189 TRAF6 - MGC:3310|RNF85 HGNC:12036|MIM:602355|Ensembl:ENSG00000175104|HPRD:03833|Vega:OTTHUMG00000166391 11 11p12 TNF receptor-associated factor 6, E3 ubiquitin protein ligase protein-coding TRAF6 TNF receptor-associated factor 6, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase TRAF6|RING finger protein 85|TNF receptor-associated factor 6|interleukin-1 signal transducer 20121230 -9606 7190 HSP90B2P - GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 HGNC:12099 15 15q26.3 heat shock protein 90kDa beta (Grp94), member 2, pseudogene pseudo HSP90B2P heat shock protein 90kDa beta (Grp94), member 2, pseudogene O - 20121230 -9606 7192 TRNAD1 - TRD HGNC:12251 1 1q23.3 transfer RNA aspartic acid 1 (anticodon GUC) tRNA TRNAD1 transfer RNA aspartic acid 1 (anticodon GUC) O - 20081007 -9606 7193 TRNAE1 - TRE|TRNE HGNC:12265|MIM:180640 1 1p36 transfer RNA glutamic acid 1 (anticodon UUC) tRNA TRNAE1 transfer RNA glutamic acid 1 (anticodon UUC) O - 20121230 -9606 7195 TRNAG1 - TRG1 MIM:189911 1 1pter-p34 tRNA glycine1 (anticodon CCC) tRNA - - - - 20121230 -9606 7196 TRNAG2 - TRG2 HGNC:12273|MIM:610407 17 17p13.1 transfer RNA glycine 2 (anticodon GCC) tRNA TRNAG2 transfer RNA glycine 2 (anticodon GCC) O - 20121230 -9606 7197 TRNAG3 - TRG3 HGNC:12274 19 19p13.3 transfer RNA glycine 3 (anticodon UCC) tRNA TRNAG3 transfer RNA glycine 3 (anticodon UCC) O - 20121230 -9606 7198 TRNAG5 - TRG5|TRGL1 HGNC:12282 16 16q22.1 transfer RNA glycine 5 (anticodon GCC) tRNA TRNAG5 transfer RNA glycine 5 (anticodon GCC) O - 20121230 -9606 7200 TRH - - HGNC:12298|MIM:613879|Ensembl:ENSG00000170893|HPRD:08944|Vega:OTTHUMG00000159634 3 3q13.3-q21 thyrotropin-releasing hormone protein-coding TRH thyrotropin-releasing hormone O prothyroliberin 20121230 -9606 7201 TRHR - TRH-R HGNC:12299|MIM:188545|Ensembl:ENSG00000174417|HPRD:11767|Vega:OTTHUMG00000164910 8 8q23 thyrotropin-releasing hormone receptor protein-coding TRHR thyrotropin-releasing hormone receptor O thyroliberin receptor 20121230 -9606 7202 TRNAI1 - TRI HGNC:12300 6 6p22.1 transfer RNA isoleucine 1 (anticodon AAU) tRNA TRNAI1 transfer RNA isoleucine 1 (anticodon AAU) O - 20121230 -9606 7203 CCT3 RP11-443G18.6 CCT-gamma|CCTG|PIG48|TCP-1-gamma|TRIC5 HGNC:1616|MIM:600114|Ensembl:ENSG00000163468|HPRD:08969|Vega:OTTHUMG00000024061 1 1q23 chaperonin containing TCP1, subunit 3 (gamma) protein-coding CCT3 chaperonin containing TCP1, subunit 3 (gamma) O T-complex protein 1 subunit gamma|T-complex protein 1, gamma subunit|TCP1 (t-complex-1) ring complex, polypeptide 5|hTRiC5 20121230 -9606 7204 TRIO - ARHGEF23|tgat HGNC:12303|MIM:601893|Ensembl:ENSG00000038382|HPRD:03537|Vega:OTTHUMG00000131057 5 5p15.2 trio Rho guanine nucleotide exchange factor protein-coding TRIO trio Rho guanine nucleotide exchange factor O PTPRF-interacting protein|triple functional domain (PTPRF interacting)|triple functional domain protein 20121230 -9606 7205 TRIP6 tcag7.1300 OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1 HGNC:12311|MIM:602933|Ensembl:ENSG00000087077|HPRD:04242|Vega:OTTHUMG00000157029 7 7q22 thyroid hormone receptor interactor 6 protein-coding TRIP6 thyroid hormone receptor interactor 6 O OPA-interacting protein 1|TR-interacting protein 6|thyroid hormone receptor interacting protein 6|thyroid receptor-interacting protein 6|zyxin related protein 1 20121230 -9606 7206 TRNAK1 - TRK1 HGNC:12314|MIM:189918 17 17p13.1 transfer RNA lysine 1 (anticodon UUU) tRNA TRNAK1 transfer RNA lysine 1 (anticodon UUU) O - 20121230 -9606 7207 TRNAL1 - TRL1|TRNP1 HGNC:12315|MIM:189932 14 14q11.2 transfer RNA leucine 1 (anticodon AAG) tRNA TRNAL1 transfer RNA leucine 1 (anticodon AAG) O - 20121230 -9606 7208 TRNAL2 - TRL2 HGNC:12316|MIM:189920 17 17p13.1 transfer RNA leucine 2 (anticodon UAG) tRNA TRNAL2 transfer RNA leucine 2 (anticodon UAG) O - 20121230 -9606 7209 TRNAL47P - TRLP1 HGNC:12317 6 6p22.1 transfer RNA leucine 47 (anticodon AAG) pseudogene pseudo TRNAL47P transfer RNA leucine 47 (anticodon AAG) pseudogene O - 20121230 -9606 7210 TRNAM1 - RNTMI1|RNTMI2|RNTMT1|TRM1|TRM2|TRMI2|TRNAMI2 HGNC:12318|MIM:180621 6 6p22.1 transfer RNA methionine 1 (anticodon CAU) tRNA TRNAM1 transfer RNA methionine 1 (anticodon CAU) O - 20121230 -9606 7211 TRMEP1 - - HGNC:12321 6 6p22.1 tRNA methionine elongator pseudogene 1 pseudo TRMEP1 tRNA methionine elongator pseudogene 1 O - 20121230 -9606 7212 TRNAM2 - RNTMI|RNTMI2|TRM1|TRMI1|TRNAMI1|TRNAMI2 HGNC:12322|MIM:180620 6 6p22.1 transfer RNA methionine 2 (anticodon CAU) tRNA TRNAM2 transfer RNA methionine 2 (anticodon CAU) O - 20121230 -9606 7214 TRNAN1 - RNN|TRN|TRN1 HGNC:12324|MIM:189880 1 1p36.1 transfer RNA asparagine 1 (anticodon GUU) tRNA TRNAN1 transfer RNA asparagine 1 (anticodon GUU) O - 20121230 -9606 7216 TRO RP6-14C6.1 MAGE-d3|MAGED3 HGNC:12326|MIM:300132|Ensembl:ENSG00000067445|HPRD:02134|Vega:OTTHUMG00000021640 X Xp11.22-p11.21 trophinin protein-coding TRO trophinin O MAGE superfamily protein|MAGE-D3 antigen|magphinin|melanoma antigen, family D, 3 20121230 -9606 7217 TRNAP1 - TRNP1|TRP1 HGNC:12330|MIM:189930 14 14q11.1 transfer RNA proline 1 (anticodon AGG) tRNA TRNAP1 transfer RNA proline 1 (anticodon AGG) O - 20121230 -9606 7218 TRNAP2 - TRNP1|TRP2 HGNC:12331|MIM:189931 14 14q11.2 transfer RNA proline 2 (anticodon AGG) tRNA TRNAP2 transfer RNA proline 2 (anticodon AGG) O - 20121230 -9606 7219 TRNAP3 - TRP3 HGNC:12332|MIM:189912 5 5q35.3 transfer RNA proline 3 (anticodon UGG) tRNA TRNAP3 transfer RNA proline 3 (anticodon UGG) O - 20121230 -9606 7220 TRPC1 - HTRP-1|TRP1 HGNC:12333|MIM:602343|Ensembl:ENSG00000144935|HPRD:11894|Vega:OTTHUMG00000159301 3 3q23 transient receptor potential cation channel, subfamily C, member 1 protein-coding TRPC1 transient receptor potential cation channel, subfamily C, member 1 O TRP-1|short transient receptor potential channel 1|transient receptor potential canonical 1|transient receptor protein 1 20121230 -9606 7221 TRPC2 - - HGNC:12334 11 11p15.4-p15.3 transient receptor potential cation channel, subfamily C, member 2, pseudogene pseudo TRPC2 transient receptor potential cation channel, subfamily C, member 2, pseudogene O - 20121230 -9606 7222 TRPC3 - TRP3 HGNC:12335|MIM:602345|Ensembl:ENSG00000138741|HPRD:15999|Vega:OTTHUMG00000133069 4 4q27 transient receptor potential cation channel, subfamily C, member 3 protein-coding TRPC3 transient receptor potential cation channel, subfamily C, member 3 O hTrp-3|short transient receptor potential channel 3|transient receptor protein 3 20121230 -9606 7223 TRPC4 RP11-10M8.1 HTRP-4|HTRP4|TRP4 HGNC:12336|MIM:603651|Ensembl:ENSG00000133107|HPRD:09154|Vega:OTTHUMG00000016752 13 13q13.3 transient receptor potential cation channel, subfamily C, member 4 protein-coding TRPC4 transient receptor potential cation channel, subfamily C, member 4 O short transient receptor potential channel 4|trp-related protein 4 20121230 -9606 7224 TRPC5 RP1-68D15.2 TRP5 HGNC:12337|MIM:300334|Ensembl:ENSG00000072315|HPRD:02273|Vega:OTTHUMG00000022212 X Xq23 transient receptor potential cation channel, subfamily C, member 5 protein-coding TRPC5 transient receptor potential cation channel, subfamily C, member 5 O TRP-5|hTRP5|short transient receptor potential channel 5|transient receptor potential channel 5|transient receptor protein 5 20121230 -9606 7225 TRPC6 - FSGS2|TRP6 HGNC:12338|MIM:603652|Ensembl:ENSG00000137672|HPRD:04710|Vega:OTTHUMG00000167483 11 11q22.1 transient receptor potential cation channel, subfamily C, member 6 protein-coding TRPC6 transient receptor potential cation channel, subfamily C, member 6 O TRP-6|short transient receptor potential channel 6|transient receptor protein 6 20121230 -9606 7226 TRPM2 - EREG1|KNP3|LTRPC2|NUDT9H|NUDT9L1|TRPC7 HGNC:12339|MIM:603749|Ensembl:ENSG00000142185|HPRD:04777|Vega:OTTHUMG00000040840 21 21q22.3 transient receptor potential cation channel, subfamily M, member 2 protein-coding TRPM2 transient receptor potential cation channel, subfamily M, member 2 O LTrpC-2|estrogen-responsive element-associated gene 1 protein|long transient receptor potential channel 2|transient receptor potential cation channel subfamily M member 2|transient receptor potential channel 7 20121230 -9606 7227 TRPS1 - GC79|LGCR HGNC:12340|MIM:604386|Ensembl:ENSG00000104447|HPRD:05091|Vega:OTTHUMG00000142829 8 8q24.12 trichorhinophalangeal syndrome I protein-coding TRPS1 trichorhinophalangeal syndrome I O tricho-rhino-phalangeal syndrome type I protein|zinc finger protein GC79|zinc finger transcription factor Trps1 20121230 -9606 7228 TRNAQ1 - TRQ1 HGNC:12341|MIM:189919 17 17p13.1 transfer RNA glutamine 1 (anticodon CUG) tRNA TRNAQ1 transfer RNA glutamine 1 (anticodon CUG) O - 20121230 -9606 7229 TRNAQ2 - TRQ2 HGNC:12342|MIM:189923 17 17q21.32 transfer RNA glutamine 2 (anticodon UUG) tRNA TRNAQ2 transfer RNA glutamine 2 (anticodon UUG) O - 20121230 -9606 7230 TRNAR1 - TRR1 HGNC:12343|MIM:610406 17 17p13.1 transfer RNA arginine 1 (anticodon UCU) tRNA TRNAR1 transfer RNA arginine 1 (anticodon UCU) O - 20121230 -9606 7231 TRNAR2 - TRR2 HGNC:12344 6 6p21.3 transfer RNA arginine 2 (anticodon ACG) tRNA TRNAR2 transfer RNA arginine 2 (anticodon ACG) O - 20121230 -9606 7232 TRNAR3 - TRR3 HGNC:12345|MIM:601432 6 6p22.1 transfer RNA arginine 3 (anticodon UCG) tRNA TRNAR3 transfer RNA arginine 3 (anticodon UCG) O - 20121230 -9606 7233 TRNAR4 - TRR4 HGNC:12346 17 17q24.2 transfer RNA arginine 4 (anticodon CCG) tRNA TRNAR4 transfer RNA arginine 4 (anticodon CCG) O - 20121230 -9606 7234 TRNAU1 - TRSP|tRNA(Sec) HGNC:12348|MIM:165060 19 19q13.2-q13.3 transfer RNA selenocysteine 1 (anticodon UCA) tRNA TRNAU1 transfer RNA selenocysteine 1 (anticodon UCA) O - 20121230 -9606 7235 TRNAU2 - TRSP2|TRSPP1 HGNC:12349 22 22q11 transfer RNA selenocysteine 2 (anticodon UCA) tRNA TRNAU2 transfer RNA selenocysteine 2 (anticodon UCA) O - 20121230 -9606 7236 TRNAT1 - TRT1 HGNC:12350|MIM:189913 5 5q35.3 transfer RNA threonine 1 (anticodon UGU) tRNA TRNAT1 transfer RNA threonine 1 (anticodon UGU) O - 20121230 -9606 7237 TRNAT2 - TRT2 HGNC:12351|MIM:189933 14 14q11.2 transfer RNA threonine 2 (anticodon UGU) tRNA TRNAT2 transfer RNA threonine 2 (anticodon UGU) O - 20121230 -9606 7238 TRNAT3 - TRT3 HGNC:12352 17 17q24.1 transfer RNA threonine 3 (anticodon AGU) tRNA TRNAT3 transfer RNA threonine 3 (anticodon AGU) O - 20080915 -9606 7239 TRNAV1 - TRV|TRV1 HGNC:12353|MIM:189921 5 5q35.3 transfer RNA valine 1 (anticodon AAC) tRNA TRNAV1 transfer RNA valine 1 (anticodon AAC) O - 20121230 -9606 7240 TRNAV2 - TRV2 HGNC:12354|MIM:612995 5 5q35.3 transfer RNA valine 2 (anticodon CAC) tRNA TRNAV2 transfer RNA valine 2 (anticodon CAC) O - 20121230 -9606 7241 TRNAV3 - TRV3 HGNC:12355 5 - transfer RNA valine 3 (anticodon AAC) tRNA TRNAV3 transfer RNA valine 3 (anticodon AAC) O - 20121230 -9606 7246 TRNAW1 - TRW HGNC:12360 11 11p11.2 transfer RNA tryptophan 1 (anticodon CCA) tRNA TRNAW1 transfer RNA tryptophan 1 (anticodon CCA) O - 20080915 -9606 7247 TSN - BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN HGNC:12379|MIM:600575|Ensembl:ENSG00000211460|HPRD:08993|Vega:OTTHUMG00000153334 2 2q21.1 translin protein-coding TSN translin O component 3 of promoter of RISC|recombination hotspot associated factor|recombination hotspot-binding protein|testis brain-RNA binding protein 20121230 -9606 7248 TSC1 - LAM|TSC HGNC:12362|MIM:605284|Ensembl:ENSG00000165699|HPRD:05594|Vega:OTTHUMG00000020844 9 9q34 tuberous sclerosis 1 protein-coding TSC1 tuberous sclerosis 1 O hamartin|tuberous sclerosis 1 protein|tumor suppressor 20121230 -9606 7249 TSC2 - LAM|TSC4 HGNC:12363|MIM:191092|Ensembl:ENSG00000103197|HPRD:01850|Vega:OTTHUMG00000128745 16 16p13.3 tuberous sclerosis 2 protein-coding TSC2 tuberous sclerosis 2 O tuberin|tuberous sclerosis 2 protein 20121230 -9606 7251 TSG101 - TSG10|VPS23 HGNC:15971|MIM:601387|Ensembl:ENSG00000074319|HPRD:03229|Vega:OTTHUMG00000167725 11 11p15 tumor susceptibility gene 101 protein-coding TSG101 tumor susceptibility gene 101 O ESCRT-I complex subunit TSG101|tumor susceptibility gene 101 protein|tumor susceptibility protein 20121230 -9606 7252 TSHB - TSH-B|TSH-BETA HGNC:12372|MIM:188540|Ensembl:ENSG00000134200|HPRD:11766 1 1p13 thyroid stimulating hormone, beta protein-coding TSHB thyroid stimulating hormone, beta O thyroid-stimulating hormone subunit beta|thyrotropin beta chain|thyrotropin beta subunit|thyrotropin subunit beta 20121230 -9606 7253 TSHR - CHNG1|LGR3|hTSHR-I HGNC:12373|MIM:603372|Ensembl:ENSG00000165409|HPRD:04537|Vega:OTTHUMG00000171429 14 14q31 thyroid stimulating hormone receptor protein-coding TSHR thyroid stimulating hormone receptor O seven transmembrane helix receptor|thyrotropin receptor|thyrotropin receptor-I, hTSHR-I 20121230 -9606 7254 TSHRL1 - - HGNC:12374 1 1q thyroid stimulating hormone receptor-like 1 protein-coding TSHRL1 thyroid stimulating hormone receptor-like 1 O - 20080828 -9606 7255 TSHRL2 - - HGNC:12375 8 - thyroid stimulating hormone receptor-like 2 protein-coding TSHRL2 thyroid stimulating hormone receptor-like 2 O - 20080828 -9606 7256 TSHRL3 - - HGNC:12376 10 - thyroid stimulating hormone receptor-like 3 protein-coding TSHRL3 thyroid stimulating hormone receptor-like 3 O - 20080828 -9606 7257 TSNAX RP11-17H4.1 TRAX HGNC:12380|MIM:602964|Ensembl:ENSG00000116918|HPRD:04270|Vega:OTTHUMG00000039486 1 1q42.1 translin-associated factor X protein-coding TSNAX translin-associated factor X O translin-associated protein X|translin-like protein 20121230 -9606 7258 TSPY1 - CT78|DYS14|TSPY|pJA923 HGNC:12381|MIM:480100|Ensembl:ENSG00000258992|HPRD:11852|Vega:OTTHUMG00000171452 Y Yp11.2 testis specific protein, Y-linked 1 protein-coding TSPY1 testis specific protein, Y-linked 1 O cancer/testis antigen 78|testis-specific Y-encoded protein 1 20121212 -9606 7259 TSPYL1 - TSPYL HGNC:12382|MIM:604714|Ensembl:ENSG00000189241|Vega:OTTHUMG00000015427 6 6q22.1 TSPY-like 1 protein-coding TSPYL1 TSPY-like 1 O TSPY-like protein 1|testis-specific Y-encoded-like protein 1|testis-specific-like protein, Y encoded 20121230 -9606 7260 TSSC1 - - HGNC:12383|MIM:608998|Ensembl:ENSG00000032389|HPRD:10287|Vega:OTTHUMG00000090329 2 2p25.3 tumor suppressing subtransferable candidate 1 protein-coding TSSC1 tumor suppressing subtransferable candidate 1 O protein TSSC1|tumor-suppressing STF cDNA 1 protein|tumor-suppressing subchromosomal transferable fragment candidate gene 1 protein 20121230 -9606 7261 TSSC2 - - HGNC:12384|MIM:608999 11 11p15.4 tumor suppressing subtransferable candidate 2 pseudogene pseudo TSSC2 tumor suppressing subtransferable candidate 2 pseudogene O - 20121021 -9606 7262 PHLDA2 - BRW1C|BWR1C|HLDA2|IPL|TSSC3 HGNC:12385|MIM:602131|Ensembl:ENSG00000181649|HPRD:03679|Vega:OTTHUMG00000010926 11 11p15.4 pleckstrin homology-like domain, family A, member 2 protein-coding PHLDA2 pleckstrin homology-like domain, family A, member 2 O beckwith-Wiedemann syndrome chromosomal region 1 candidate gene C protein|imprinted in placenta and liver protein|p17-BWR1C|p17-Beckwith-Wiedemann region 1 C|p17-Beckwith-Wiedemann region 1C|pleckstrin homology-like domain family A member 2|tumor suppressing subchromosomal transferable fragment cDNA 3|tumor suppressing subtransferable candidate 3|tumor-suppressing STF cDNA 3 protein|tumor-suppressing subchromosomal transferable fragment candidate gene 3 protein|tumor-supressing STF cDNA 3 20121230 -9606 7263 TST LL22NC01-146D10.3 RDS HGNC:12388|MIM:180370|Ensembl:ENSG00000128311|HPRD:01583|Vega:OTTHUMG00000150533 22 22q13.1 thiosulfate sulfurtransferase (rhodanese) protein-coding TST thiosulfate sulfurtransferase (rhodanese) O thiosulfate sulfurtransferase 20121230 -9606 7264 TSTA3 - FX|P35B|SDR4E1 HGNC:12390|MIM:137020|Ensembl:ENSG00000104522|HPRD:00654|Vega:OTTHUMG00000165159 8 8q24.3 tissue specific transplantation antigen P35B protein-coding TSTA3 tissue specific transplantation antigen P35B O 3-5 epimerase/4-reductase|GDP-4-keto-6-deoxy-D-mannose epimerase-reductase|GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase|GDP-L-fucose synthase|red cell NADP(H)-binding protein|short chain dehydrogenase/reductase family 4E, member 1|tissue specific transplantation antigen 3 20121230 -9606 7265 TTC1 - TPR1 HGNC:12391|MIM:601963|Ensembl:ENSG00000113312|HPRD:11881|Vega:OTTHUMG00000130326 5 5q33.3 tetratricopeptide repeat domain 1 protein-coding TTC1 tetratricopeptide repeat domain 1 O TPR repeat protein 1|tetratricopeptide repeat protein 1 20121230 -9606 7266 DNAJC7 - DJ11|DJC7|TPR2|TTC2 HGNC:12392|MIM:601964|Ensembl:ENSG00000168259|Vega:OTTHUMG00000180862 17 17q11.2 DnaJ (Hsp40) homolog, subfamily C, member 7 protein-coding DNAJC7 DnaJ (Hsp40) homolog, subfamily C, member 7 O TPR repeat protein 2|dnaJ homolog subfamily C member 7|tetratricopeptide repeat domain 2|tetratricopeptide repeat protein 2 20121230 -9606 7267 TTC3 - DCRR1|RNF105|TPRDIII HGNC:12393|MIM:602259|Ensembl:ENSG00000182670|HPRD:03773|Vega:OTTHUMG00000086654 21 21q22.2 tetratricopeptide repeat domain 3 protein-coding TTC3 tetratricopeptide repeat domain 3 O E3 ubiquitin-protein ligase TTC3|RING finger protein 105|TPR repeat protein 3|TPR repeat protein D|tetratricopeptide repeat protein 3 20121230 -9606 7268 TTC4 RP5-1043G4.2 - HGNC:12394|MIM:606753|Ensembl:ENSG00000243725|HPRD:08417|Vega:OTTHUMG00000009914 1 1p32.3 tetratricopeptide repeat domain 4 protein-coding TTC4 tetratricopeptide repeat domain 4 O TPR repeat protein 4|tetratricopeptide repeat protein 4 20121230 -9606 7270 TTF1 - TTF-1|TTF-I HGNC:12397|MIM:600777|Ensembl:ENSG00000125482|HPRD:02866|Vega:OTTHUMG00000020836 9 9q34.13 transcription termination factor, RNA polymerase I protein-coding TTF1 transcription termination factor, RNA polymerase I O transcription termination factor 1 20121230 -9606 7271 TTIM1 - - HGNC:12400|MIM:147830 7 7p12-cen T-cell tumor invasion and metastasis 1 unknown TTIM1 T-cell tumor invasion and metastasis 1 O - 20080828 -9606 7272 TTK RP3-357D13.2 CT96|ESK|MPS1|MPS1L1|PYT HGNC:12401|MIM:604092|Ensembl:ENSG00000112742|HPRD:04973|Vega:OTTHUMG00000015088 6 6q13-q21 TTK protein kinase protein-coding TTK TTK protein kinase O cancer/testis antigen 96|dual specificity protein kinase TTK|monopolar spindle 1-like 1|phosphotyrosine picked threonine kinase|phosphotyrosine picked threonine-protein kinase 20121230 -9606 7273 TTN - CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD HGNC:12403|MIM:188840|Ensembl:ENSG00000155657|HPRD:01787|Vega:OTTHUMG00000154448 2 2q31 titin protein-coding TTN titin O connectin|rhabdomyosarcoma antigen MU-RMS-40.14 20121230 -9606 7274 TTPA - ATTP|AVED|TTP1|alphaTTP HGNC:12404|MIM:600415|Ensembl:ENSG00000137561|HPRD:02685|Vega:OTTHUMG00000164367 8 8q12.3 tocopherol (alpha) transfer protein protein-coding TTPA tocopherol (alpha) transfer protein O alpha-TTP|alpha-tocopherol transfer protein|tocopherol (alpha) transfer protein (ataxia (Friedreich-like) with vitamin E deficiency) 20121230 -9606 7275 TUB - rd5 HGNC:12406|MIM:601197|Ensembl:ENSG00000166402|HPRD:03121|Vega:OTTHUMG00000165690 11 11p15.5 tubby homolog (mouse) protein-coding TUB tubby homolog (mouse) O tubby homologue|tubby protein homolog 20121230 -9606 7276 TTR - CTS|CTS1|HsT2651|PALB|TBPA HGNC:12405|MIM:176300|Ensembl:ENSG00000118271|HPRD:01447|Vega:OTTHUMG00000131984 18 18q12.1 transthyretin protein-coding TTR transthyretin O ATTR|carpal tunnel syndrome 1|prealbumin, amyloidosis type I|thyroxine-binding prealbumin 20121230 -9606 7277 TUBA4A - H2-ALPHA|TUBA1 HGNC:12407|MIM:191110|Ensembl:ENSG00000127824|HPRD:01851|Vega:OTTHUMG00000133126 2 2q35 tubulin, alpha 4a protein-coding TUBA4A tubulin, alpha 4a O tubulin H2-alpha|tubulin alpha-1 chain|tubulin alpha-4A chain|tubulin, alpha 1 (testis specific) 20121230 -9606 7278 TUBA3C - TUBA2|bA408E5.3 HGNC:12408|MIM:602528|HPRD:03958 13 13q11 tubulin, alpha 3c protein-coding TUBA3C tubulin, alpha 3c O alpha-tubulin 2|alpha-tubulin 3C/D|tubulin alpha-2 chain|tubulin alpha-3C/D chain|tubulin, alpha 2 20121230 -9606 7280 TUBB2A - TUBB|TUBB2|dJ40E16.7 HGNC:12412|Ensembl:ENSG00000137267|HPRD:01852|Vega:OTTHUMG00000014135 6 6p25 tubulin, beta 2A class IIa protein-coding TUBB2A tubulin, beta 2A class IIa O class IIa beta-tubulin|tubulin beta-2A chain|tubulin, beta polypeptide 2 20121230 -9606 7283 TUBG1 - GCP-1|TUBG|TUBGCP1 HGNC:12417|MIM:191135|Ensembl:ENSG00000131462|HPRD:01853|Vega:OTTHUMG00000180277 17 17q21 tubulin, gamma 1 protein-coding TUBG1 tubulin, gamma 1 O gamma-1-tubulin|gamma-tubulin complex component 1|tubulin gamma-1 chain|tubulin, gamma polypeptide 20121230 -9606 7284 TUFM - COXPD4|EF-TuMT|EFTU|P43 HGNC:12420|MIM:602389|Ensembl:ENSG00000178952|HPRD:03861|Vega:OTTHUMG00000097039 16 16p11.2 Tu translation elongation factor, mitochondrial protein-coding TUFM Tu translation elongation factor, mitochondrial O EF-Tu|elongation factor Tu, mitochondrial 20121230 -9606 7286 TUFT1 RP11-74C1.1 - HGNC:12422|MIM:600087|Ensembl:ENSG00000143367|HPRD:02516|Vega:OTTHUMG00000012536 1 1q21 tuftelin 1 protein-coding TUFT1 tuftelin 1 O tuftelin 20121230 -9606 7287 TULP1 RP3-340B19.1 LCA15|RP14|TUBL1 HGNC:12423|MIM:602280|Ensembl:ENSG00000112041|HPRD:03788|Vega:OTTHUMG00000014575 6 6p21.3 tubby like protein 1 protein-coding TULP1 tubby like protein 1 O tubby-related protein 1 20121230 -9606 7288 TULP2 - CT65|TUBL2 HGNC:12424|MIM:602309|Ensembl:ENSG00000104804|HPRD:03813|Vega:OTTHUMG00000164406 19 19q13.1 tubby like protein 2 protein-coding TULP2 tubby like protein 2 O cancer testis antigen 65|cancer/testis antigen 65|tubby-like protein 2|tubby-related protein 2 20121230 -9606 7289 TULP3 - TUBL3 HGNC:12425|MIM:604730|Ensembl:ENSG00000078246|HPRD:05292|Vega:OTTHUMG00000168152 12 12p13.3 tubby like protein 3 protein-coding TULP3 tubby like protein 3 O tubby-like protein 3|tubby-related protein 3 20121230 -9606 7290 HIRA - DGCR1|TUP1|TUPLE1 HGNC:4916|MIM:600237|Ensembl:ENSG00000100084|HPRD:02583|Vega:OTTHUMG00000150134 22 22q11.21 HIR histone cell cycle regulation defective homolog A (S. cerevisiae) protein-coding HIRA HIR histone cell cycle regulation defective homolog A (S. cerevisiae) O DiGeorge critical region gene 1|TUP1-like enhancer of split protein 1|protein HIRA 20121230 -9606 7291 TWIST1 - ACS3|BPES2|BPES3|CRS1|SCS|TWIST|bHLHa38 HGNC:12428|MIM:601622|Ensembl:ENSG00000122691|HPRD:03374|Vega:OTTHUMG00000090821 7 7p21.2 twist basic helix-loop-helix transcription factor 1 protein-coding TWIST1 twist basic helix-loop-helix transcription factor 1 O B-HLH DNA binding protein|H-twist|TWIST homolog of drosophila|class A basic helix-loop-helix protein 38|twist homolog 1|twist-related protein 1 20121230 -9606 7292 TNFSF4 - CD134L|CD252|GP34|OX-40L|OX4OL|TXGP1 HGNC:11934|MIM:603594|Ensembl:ENSG00000117586|HPRD:04668|Vega:OTTHUMG00000034838 1 1q25 tumor necrosis factor (ligand) superfamily, member 4 protein-coding TNFSF4 tumor necrosis factor (ligand) superfamily, member 4 O CD134 ligand|OX40 antigen ligand|OX40L|TAX transcriptionally-activated glycoprotein 1|glycoprotein Gp34|tax-transcriptionally activated glycoprotein 1 (34kD)|tumor necrosis factor ligand superfamily member 4 20121230 -9606 7293 TNFRSF4 RP5-902P8.3 ACT35|CD134|OX40|TXGP1L HGNC:11918|MIM:600315|Ensembl:ENSG00000186827|HPRD:02636|Vega:OTTHUMG00000001415 1 1p36 tumor necrosis factor receptor superfamily, member 4 protein-coding TNFRSF4 tumor necrosis factor receptor superfamily, member 4 O ACT35 antigen|ATC35 antigen|CD134 antigen|OX40 antigen|OX40 cell surface antigen|OX40 homologue|OX40L receptor|TAX transcriptionally-activated glycoprotein 1 receptor|lymphoid activation antigene ACT35|tax-transcriptionally activated glycoprotein 1 receptor|tumor necrosis factor receptor superfamily member 4 20121230 -9606 7294 TXK - BTKL|PSCTK5|PTK4|RLK|TKL HGNC:12434|MIM:600058|Ensembl:ENSG00000074966|HPRD:02505|Vega:OTTHUMG00000102065 4 4p12 TXK tyrosine kinase protein-coding TXK TXK tyrosine kinase O PTK4 protein tyrosine kinase 4|protein-tyrosine kinase 4|resting lymphocyte kinase|tyrosine kinase|tyrosine-protein kinase TXK 20121230 -9606 7295 TXN RP11-427L11.1 TRDX|TRX|TRX1 HGNC:12435|MIM:187700|Ensembl:ENSG00000136810|HPRD:01761|Vega:OTTHUMG00000020480 9 9q31 thioredoxin protein-coding TXN thioredoxin O ADF|ATL-derived factor|SASP|TXN delta 3|surface-associated sulphydryl protein|thioredoxin delta 3 20121230 -9606 7296 TXNRD1 - GRIM-12|TR|TR1|TRXR1|TXNR HGNC:12437|MIM:601112|Ensembl:ENSG00000198431|HPRD:03068|Vega:OTTHUMG00000166481 12 12q23-q24.1 thioredoxin reductase 1 protein-coding TXNRD1 thioredoxin reductase 1 O KM-102-derived reductase-like factor|gene associated with retinoic and IFN-induced mortality 12 protein|gene associated with retinoic and interferon-induced mortality 12 protein|oxidoreductase|thioredoxin reductase 1, cytoplasmic|thioredoxin reductase GRIM-12|thioredoxin reductase TR1 20121230 -9606 7297 TYK2 - JTK1 HGNC:12440|MIM:176941|Ensembl:ENSG00000105397|HPRD:01490|Vega:OTTHUMG00000166373 19 19p13.2 tyrosine kinase 2 protein-coding TYK2 tyrosine kinase 2 O non-receptor tyrosine-protein kinase TYK2 20121230 -9606 7298 TYMS OK/SW-cl.29 HST422|TMS|TS HGNC:12441|MIM:188350|Ensembl:ENSG00000176890|HPRD:01774|Vega:OTTHUMG00000131473 18 18p11.32 thymidylate synthetase protein-coding TYMS thymidylate synthetase O TSase|thymidylate synthase 20121230 -9606 7299 TYR - CMM8|OCA1A|OCAIA|SHEP3 HGNC:12442|MIM:606933|Ensembl:ENSG00000077498|HPRD:06086|Vega:OTTHUMG00000167294 11 11q14-q21 tyrosinase protein-coding TYR tyrosinase O LB24-AB|SK29-AB|monophenol monooxygenase|oculocutaneous albinism IA|tumor rejection antigen AB 20121230 -9606 7300 TYRL - - HGNC:12443|MIM:191270 11 11p11.2 tyrosinase-like (pseudogene) pseudo TYRL tyrosinase-like (pseudogene) O - 20121230 -9606 7301 TYRO3 - BYK|Dtk|RSE|Sky|Tif HGNC:12446|MIM:600341|Ensembl:ENSG00000092445|HPRD:02641|Vega:OTTHUMG00000130341 15 15q15 TYRO3 protein tyrosine kinase protein-coding TYRO3 TYRO3 protein tyrosine kinase O tyrosine-protein kinase DTK|tyrosine-protein kinase RSE|tyrosine-protein kinase SKY|tyrosine-protein kinase byk|tyrosine-protein kinase receptor TYRO3 20121230 -9606 7302 TYRO3P - - HGNC:12447 15 15q24.2 TYRO3P protein tyrosine kinase pseudogene pseudo TYRO3P TYRO3P protein tyrosine kinase pseudogene O - 20121230 -9606 7303 TYS - HRZ HGNC:12452|MIM:181600 4 4q28-q31 sclerotylosis unknown TYS sclerotylosis O - 20120622 -9606 7305 TYROBP - DAP12|KARAP|PLOSL HGNC:12449|MIM:604142|Ensembl:ENSG00000011600|HPRD:04996|Vega:OTTHUMG00000181739 19 19q13.1 TYRO protein tyrosine kinase binding protein protein-coding TYROBP TYRO protein tyrosine kinase binding protein O DNAX-activation protein 12|KAR-associated protein|TYRO protein tyrosine kinase-binding protein|killer activating receptor associated protein|killer-activating receptor-associated protein 20121230 -9606 7306 TYRP1 RP11-3L8.1 CAS2|CATB|GP75|OCA3|SHEP11|TRP|TYRP|b-PROTEIN HGNC:12450|MIM:115501|Ensembl:ENSG00000107165|HPRD:00283|Vega:OTTHUMG00000021034 9 9p23 tyrosinase-related protein 1 protein-coding TYRP1 tyrosinase-related protein 1 O 5,6-dihydroxyindole-2-carboxylic acid oxidase|DHICA oxidase|TRP-1|TRP1|catalase B|glycoprotein 75|melanoma antigen gp75 20121230 -9606 7307 U2AF1 - FP793|RN|RNU2AF1|U2AF35|U2AFBP HGNC:12453|MIM:191317|Ensembl:ENSG00000160201|HPRD:01871|Vega:OTTHUMG00000086836 21 21q22.3 U2 small nuclear RNA auxiliary factor 1 protein-coding U2AF1 U2 small nuclear RNA auxiliary factor 1 O U2 small nuclear RNA auxillary factor 1|U2 small nuclear ribonucleoprotein auxillary factor, 35-KD subunit|U2 snRNP auxiliary factor small subunit|U2(RNU2) small nuclear RNA auxiliary factor binding protein|splicing factor U2AF 35 kDa subunit|splicing factor U2AF 35kDa subunit 20121230 -9606 7310 ZRSR1 - U2AF1-RS1|U2AF1L1|U2AF1P|U2AF1RS1|U2AFBPL HGNC:12456|MIM:601079|HPRD:03049 5 5q22.2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 1 pseudo ZRSR1 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 1 O - 20121230 -9606 7311 UBA52 - CEP52|HUBCEP52|L40|RPL40 HGNC:12458|MIM:191321|Ensembl:ENSG00000221983|HPRD:08931 19 19p13.1-p12 ubiquitin A-52 residue ribosomal protein fusion product 1 protein-coding UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 O 60S ribosomal protein L40|ubiquitin carboxyl extension protein 52|ubiquitin-52 amino acid fusion protein|ubiquitin-60S ribosomal protein L40|ubiquitin-CEP52 20121230 -9606 7312 UBA52P1 - RPL40_1_796 HGNC:12459 7 7p15.2 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 pseudo UBA52P1 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 O - 20121230 -9606 7313 UBA52P2 - RPL40_4_1339 HGNC:12460 14 14q11.2 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 2 pseudo UBA52P2 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 2 O - 20121230 -9606 7314 UBB - RPS27A|UBA52|UBC HGNC:12463|MIM:191339|Ensembl:ENSG00000170315|HPRD:06771|Vega:OTTHUMG00000058987 17 17p12-p11.2 ubiquitin B protein-coding UBB ubiquitin B O polyubiquitin B|polyubiquitin-B 20121230 -9606 7315 UBBP1 - - HGNC:12464 2 2q14.3 ubiquitin B pseudogene 1 pseudo UBBP1 ubiquitin B pseudogene 1 O - 20121230 -9606 7316 UBC - HMG20 HGNC:12468|MIM:191340|Ensembl:ENSG00000150991|HPRD:07038|Vega:OTTHUMG00000044421 12 12q24.3 ubiquitin C protein-coding UBC ubiquitin C O polyubiquitin-C 20121230 -9606 7317 UBA1 CTD-2522E6.1 A1S9|A1S9T|A1ST|AMCX1|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X HGNC:12469|MIM:314370|Ensembl:ENSG00000130985|HPRD:02440|Vega:OTTHUMG00000021436 X Xp11.23 ubiquitin-like modifier activating enzyme 1 protein-coding UBA1 ubiquitin-like modifier activating enzyme 1 O A1S9T and BN75 temperature sensitivity complementing|POC20 centriolar protein homolog|UBA1, ubiquitin-activating enzyme E1 homolog A|ubiquitin-like modifier-activating enzyme 1 20121230 -9606 7318 UBA7 - D8|UBA1B|UBE1L|UBE2 HGNC:12471|MIM:191325|Ensembl:ENSG00000182179|HPRD:01873|Vega:OTTHUMG00000158267 3 3p21 ubiquitin-like modifier activating enzyme 7 protein-coding UBA7 ubiquitin-like modifier activating enzyme 7 O UBA1, ubiquitin-activating enzyme E1 homolog B|UBA7, ubiquitin-activating enzyme E1|ubiquitin-activating enzyme 7|ubiquitin-activating enzyme E1 homolog|ubiquitin-activating enzyme E1-related protein|ubiquitin-activating enzyme-2|ubiquitin-like modifier-activating enzyme 7 20121230 -9606 7319 UBE2A - HHR6A|MRXS30|MRXSN|RAD6A|UBC2 HGNC:12472|MIM:312180|Ensembl:ENSG00000077721|HPRD:02422|Vega:OTTHUMG00000022275 X Xq24 ubiquitin-conjugating enzyme E2A protein-coding UBE2A ubiquitin-conjugating enzyme E2A O HR6A|RAD6 homolog A|ubiquitin carrier protein A|ubiquitin-conjugating enzyme E2 A|ubiquitin-conjugating enzyme E2A (RAD6 homolog)|ubiquitin-protein ligase A 20121230 -9606 7320 UBE2B - E2-17kDa|HHR6B|HR6B|RAD6B|UBC2 HGNC:12473|MIM:179095|Ensembl:ENSG00000119048|HPRD:01533|Vega:OTTHUMG00000129120 5 5q31.1 ubiquitin-conjugating enzyme E2B protein-coding UBE2B ubiquitin-conjugating enzyme E2B O E2 protein|RAD6 homolog B|ubiquitin carrier protein B|ubiquitin-conjugating enzyme E2 B|ubiquitin-conjugating enzyme E2-17 kDa|ubiquitin-conjugating enzyme E2B (RAD6 homolog)|ubiquitin-protein ligase B 20121230 -9606 7321 UBE2D1 - E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A HGNC:12474|MIM:602961|Ensembl:ENSG00000072401|HPRD:04267|Vega:OTTHUMG00000018269 10 10q21.1 ubiquitin-conjugating enzyme E2D 1 protein-coding UBE2D1 ubiquitin-conjugating enzyme E2D 1 O UBC4/5 homolog|stimulator of Fe transport|ubiquitin carrier protein D1|ubiquitin-conjugating enzyme E2 D1|ubiquitin-conjugating enzyme E2(17)KB 1|ubiquitin-conjugating enzyme E2-17 kDa 1|ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast)|ubiquitin-protein ligase D1 20121230 -9606 7322 UBE2D2 - E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH5B HGNC:12475|MIM:602962|Ensembl:ENSG00000131508|HPRD:04268|Vega:OTTHUMG00000163282 5 5q31.2 ubiquitin-conjugating enzyme E2D 2 protein-coding UBE2D2 ubiquitin-conjugating enzyme E2D 2 O ubiquitin carrier protein D2|ubiquitin-conjugating enzyme E2 D2|ubiquitin-conjugating enzyme E2(17)KB 2|ubiquitin-conjugating enzyme E2-17 kDa 2|ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC4/5)|ubiquitin-protein ligase D2 20121230 -9606 7323 UBE2D3 - E2(17)KB3|UBC4/5|UBCH5C HGNC:12476|MIM:602963|Ensembl:ENSG00000109332|HPRD:04269|Vega:OTTHUMG00000131119 4 4q24 ubiquitin-conjugating enzyme E2D 3 protein-coding UBE2D3 ubiquitin-conjugating enzyme E2D 3 O E2(17)KB 3|ubiquitin carrier protein D3|ubiquitin-conjugating enzyme E2 D3|ubiquitin-conjugating enzyme E2(17)KB 3|ubiquitin-conjugating enzyme E2-17 kDa 3|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC4/5)|ubiquitin-protein ligase D3 20121230 -9606 7324 UBE2E1 - UBCH6 HGNC:12477|MIM:602916|Ensembl:ENSG00000170142|HPRD:04225|Vega:OTTHUMG00000130483 3 3p24.2 ubiquitin-conjugating enzyme E2E 1 protein-coding UBE2E1 ubiquitin-conjugating enzyme E2E 1 O ubiquitin carrier protein E1|ubiquitin-conjugating enzyme E2 E1|ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2E 1 (homologous to yeast UBC4/5)|ubiquitin-protein ligase E1 20121230 -9606 7325 UBE2E2 - UBCH8 HGNC:12478|MIM:602163|Ensembl:ENSG00000182247|HPRD:06779|Vega:OTTHUMG00000130482 3 3p24.2 ubiquitin-conjugating enzyme E2E 2 protein-coding UBE2E2 ubiquitin-conjugating enzyme E2E 2 O ubiquitin carrier protein E2|ubiquitin-conjugating enzyme E2 E2|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2E 2 (homologous to yeast UBC4/5)|ubiquitin-protein ligase E2 20121230 -9606 7326 UBE2G1 - E217K|UBC7|UBE2G HGNC:12482|MIM:601569|Ensembl:ENSG00000132388|HPRD:03340|Vega:OTTHUMG00000177826 17 17p13.2 ubiquitin-conjugating enzyme E2G 1 protein-coding UBE2G1 ubiquitin-conjugating enzyme E2G 1 O ubiquitin carrier protein G1|ubiquitin-conjugating enzyme E2 G1|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast)|ubiquitin-conjugating enzyme E2G 1 (homologous to C. elegans UBC7)|ubiquitin-protein ligase G1 20121230 -9606 7327 UBE2G2 - UBC7 HGNC:12483|MIM:603124|Ensembl:ENSG00000184787|HPRD:04387|Vega:OTTHUMG00000089179 21 21q22.3 ubiquitin-conjugating enzyme E2G 2 protein-coding UBE2G2 ubiquitin-conjugating enzyme E2G 2 O ubiquitin carrier protein G2|ubiquitin conjugating enzyme 7|ubiquitin conjugating enzyme G2|ubiquitin-conjugating enzyme E2 G2|ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast)|ubiquitin-conjugating enzyme E2G 2 (homologous to yeast UBC7)|ubiquitin-protein ligase G2 20121230 -9606 7328 UBE2H - E2-20K|GID3|UBC8|UBCH|UBCH2 HGNC:12484|MIM:601082|Ensembl:ENSG00000186591|HPRD:03052|Vega:OTTHUMG00000157650 7 7q32 ubiquitin-conjugating enzyme E2H protein-coding UBE2H ubiquitin-conjugating enzyme E2H O GID complex subunit 3, UBC8 homolog|ubiquitin carrier protein H|ubiquitin-conjugating enzyme E2 H|ubiquitin-conjugating enzyme E2-20K|ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast)|ubiquitin-conjugating enzyme E2H (homologous to yeast UBC8)|ubiquitin-protein ligase H 20121230 -9606 7329 UBE2I LA16c-358B7.1 C358B7.1|P18|UBC9 HGNC:12485|MIM:601661|Ensembl:ENSG00000103275|HPRD:09045|Vega:OTTHUMG00000047845 16 16p13.3 ubiquitin-conjugating enzyme E2I protein-coding UBE2I ubiquitin-conjugating enzyme E2I O SUMO-1-protein ligase|SUMO-conjugating enzyme UBC9|SUMO-protein ligase|ubiquitin carrier protein 9|ubiquitin carrier protein I|ubiquitin conjugating enzyme 9|ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)|ubiquitin-conjugating enzyme E2I (homologous to yeast UBC9)|ubiquitin-conjugating enzyme UbcE2A|ubiquitin-like protein SUMO-1 conjugating enzyme|ubiquitin-protein ligase E2I|ubiquitin-protein ligase I 20121230 -9606 7332 UBE2L3 - E2-F1|L-UBC|UBCH7|UbcM4 HGNC:12488|MIM:603721|Ensembl:ENSG00000185651|HPRD:04762|Vega:OTTHUMG00000150823 22 22q11.21 ubiquitin-conjugating enzyme E2L 3 protein-coding UBE2L3 ubiquitin-conjugating enzyme E2L 3 O ubiquitin carrier protein L3|ubiquitin-conjugating enzyme E2 L3|ubiquitin-conjugating enzyme E2-F1|ubiquitin-conjugating enzyme UBCH7|ubiquitin-protein ligase L3 20121230 -9606 7333 UBE2L4 - - HGNC:12489 19 19q13.2 ubiquitin-conjugating enzyme E2L 4 pseudo UBE2L4 ubiquitin-conjugating enzyme E2L 4 O - 20121230 -9606 7334 UBE2N - UBC13|UbcH-ben|UbcH13 HGNC:12492|MIM:603679|Ensembl:ENSG00000177889|HPRD:04725|Vega:OTTHUMG00000170156 12 12q22 ubiquitin-conjugating enzyme E2N protein-coding UBE2N ubiquitin-conjugating enzyme E2N O bendless-like ubiquitin conjugating enzyme|bendless-like ubiquitin-conjugating enzyme|ubiquitin carrier protein N|ubiquitin-conjugating enzyme E2 N|ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)|ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13)|ubiquitin-protein ligase N|yeast UBC13 homolog 20121230 -9606 7335 UBE2V1 P/OKcl.19 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A HGNC:12494|MIM:602995|Ensembl:ENSG00000244687|Vega:OTTHUMG00000152626 20 20q13.2 ubiquitin-conjugating enzyme E2 variant 1 protein-coding UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 O DNA-binding protein|TRAF6-regulated IKK activator 1 beta Uev1A 20121230 -9606 7336 UBE2V2 - DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 HGNC:12495|MIM:603001|Ensembl:ENSG00000169139|HPRD:04300|Vega:OTTHUMG00000164206 8 8q11.21 ubiquitin-conjugating enzyme E2 variant 2 protein-coding UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 O 1 alpha,25-dihydroxyvitamin D3-inducible|DDVit 1|MMS2 homolog|enterocyte differentiation promoting factor|enterocyte differentiation-associated factor 1|enterocyte differentiation-associated factor EDAF-1|enterocyte differentiation-promoting factor 1|methyl methanesulfonate sensitive 2, S. cerevisiae, homolog of|vitamin D3-inducible protein 20121230 -9606 7337 UBE3A - ANCR|AS|E6-AP|EPVE6AP|HPVE6A HGNC:12496|MIM:601623|Ensembl:ENSG00000114062|HPRD:03375|Vega:OTTHUMG00000171548 15 15q11.2 ubiquitin protein ligase E3A protein-coding UBE3A ubiquitin protein ligase E3A O CTCL tumor antigen se37-2|E6AP ubiquitin-protein ligase|human papilloma virus E6-associated protein|human papillomavirus E6-associated protein|oncogenic protein-associated protein E6-AP|renal carcinoma antigen NY-REN-54|ubiquitin-protein ligase E3A 20121230 -9606 7338 UBE3AP1 - - HGNC:12497 2 2q11.1 ubiquitin protein ligase E3A pseudogene 1 pseudo UBE3AP1 ubiquitin protein ligase E3A pseudogene 1 O - 20121230 -9606 7339 UBE3AP2 - - HGNC:12498 21 21q21.3 ubiquitin protein ligase E3A pseudogene 2 pseudo UBE3AP2 ubiquitin protein ligase E3A pseudogene 2 O - 20121230 -9606 7341 SUMO1 OK/SW-cl.43 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 HGNC:12502|MIM:601912|Ensembl:ENSG00000116030|HPRD:03554|Vega:OTTHUMG00000132839 2 2q33 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) protein-coding SUMO1 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) O GAP modifying protein 1|SMT3 homolog 3|sentrin|small ubiquitin-related modifier 1|ubiquitin-homology domain protein PIC1|ubiquitin-like protein SMT3C|ubiquitin-like protein UBL1 20121230 -9606 7342 UBP1 - LBP-1B|LBP-1a|LBP1A|LBP1B HGNC:12507|MIM:609784|Ensembl:ENSG00000153560|HPRD:10291|Vega:OTTHUMG00000130749 3 3p22.3 upstream binding protein 1 (LBP-1a) protein-coding UBP1 upstream binding protein 1 (LBP-1a) O transcription factor LBP-1|upstream-binding protein 1 20121230 -9606 7343 UBTF - NOR-90|UBF|UBF-1|UBF1 HGNC:12511|MIM:600673|Ensembl:ENSG00000108312|HPRD:02814|Vega:OTTHUMG00000167585 17 17q21.31 upstream binding transcription factor, RNA polymerase I protein-coding UBTF upstream binding transcription factor, RNA polymerase I O 90-kDa nucleolus organizer region autoantigen|autoantigen NOR-90|nucleolar transcription factor 1 20121230 -9606 7345 UCHL1 - PARK5|PGP 9.5|PGP9.5|PGP95|Uch-L1 HGNC:12513|MIM:191342|Ensembl:ENSG00000154277|HPRD:01877|Vega:OTTHUMG00000099377 4 4p14 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) protein-coding UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) O neuron cytoplasmic protein 9.5|ubiquitin C-terminal hydrolase|ubiquitin carboxyl-terminal hydrolase isozyme L1|ubiquitin thioesterase L1 20121230 -9606 7347 UCHL3 RP11-173B14.3 UCH-L3 HGNC:12515|MIM:603090|Ensembl:ENSG00000118939|HPRD:04367|Vega:OTTHUMG00000017090 13 13q22.2 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) protein-coding UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) O ubiquitin carboxyl-terminal hydrolase isozyme L3|ubiquitin thioesterase L3|ubiquitin thiolesterase 20121230 -9606 7348 UPK1B - TSPAN20|UPIB|UPK1 HGNC:12578|MIM:602380|Ensembl:ENSG00000114638|HPRD:03853|Vega:OTTHUMG00000159354 3 3q13.32 uroplakin 1B protein-coding UPK1B uroplakin 1B O UP1b|tetraspan|tetraspanin-20|tspan-20|uroplakin Ib|uroplakin-1b 20121230 -9606 7349 UCN - UI|UROC HGNC:12516|MIM:600945|Ensembl:ENSG00000163794|HPRD:02970|Vega:OTTHUMG00000097068 2 2p23-p21 urocortin protein-coding UCN urocortin O urocortin, preproprotein 20121230 -9606 7350 UCP1 - SLC25A7|UCP HGNC:12517|MIM:113730|Ensembl:ENSG00000109424|HPRD:00221|Vega:OTTHUMG00000133415 4 4q28-q31 uncoupling protein 1 (mitochondrial, proton carrier) protein-coding UCP1 uncoupling protein 1 (mitochondrial, proton carrier) O mitochondrial brown fat uncoupling protein 1|solute carrier family 25 member 7|thermogenin 20121230 -9606 7351 UCP2 - BMIQ4|SLC25A8|UCPH HGNC:12518|MIM:601693|Ensembl:ENSG00000175567|HPRD:03410|Vega:OTTHUMG00000168095 11 11q13 uncoupling protein 2 (mitochondrial, proton carrier) protein-coding UCP2 uncoupling protein 2 (mitochondrial, proton carrier) O UCP 2|mitochondrial uncoupling protein 2|solute carrier family 25 member 8 20121230 -9606 7352 UCP3 - SLC25A9 HGNC:12519|MIM:602044|Ensembl:ENSG00000175564|HPRD:03623|Vega:OTTHUMG00000168109 11 11q13.4 uncoupling protein 3 (mitochondrial, proton carrier) protein-coding UCP3 uncoupling protein 3 (mitochondrial, proton carrier) O UCP 3|Uncoupling protein-3|mitochondrial uncoupling protein 3|solute carrier family 25 member 9 20121230 -9606 7353 UFD1L - UFD1 HGNC:12520|MIM:601754|Ensembl:ENSG00000070010|HPRD:06778|Vega:OTTHUMG00000150130 22 22q11.21 ubiquitin fusion degradation 1 like (yeast) protein-coding UFD1L ubiquitin fusion degradation 1 like (yeast) O UB fusion protein 1|ubiquitin fusion degradation protein 1 homolog 20121230 -9606 7355 SLC35A2 - UGALT|UGAT|UGT|UGT1|UGT2|UGTL HGNC:11022|MIM:314375|Ensembl:ENSG00000102100|HPRD:02441|Vega:OTTHUMG00000024129 X Xp11.23-p11.22 solute carrier family 35 (UDP-galactose transporter), member A2 protein-coding SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 O UDP-Gal-Tr|UDP-galactose translocator|UDP-galactose transporter|solute carrier family 35 (UDP-galactose transporter), member 2|solute carrier family 35 member A2 20121230 -9606 7356 SCGB1A1 - CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 HGNC:12523|MIM:192020|Ensembl:ENSG00000149021|HPRD:01884|Vega:OTTHUMG00000167526 11 11q12.3 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin) O blastokinin|clara cell phospholipid-binding protein|clara cells 10 kDa secretory protein|urinary protein 1|urine protein 1|uteroglobin 20121230 -9606 7357 UGCG - GCS|GLCT1 HGNC:12524|MIM:602874|Ensembl:ENSG00000148154|HPRD:04190|Vega:OTTHUMG00000020498 9 9q31 UDP-glucose ceramide glucosyltransferase protein-coding UGCG UDP-glucose ceramide glucosyltransferase O GLCT-1|UDP-glucose:N-acylsphingosine D-glucosyltransferase|ceramide glucosyltransferase|glucosylceramide synthase 20121230 -9606 7358 UGDH - GDH|UDP-GlcDH|UDPGDH|UGD HGNC:12525|MIM:603370|Ensembl:ENSG00000109814|HPRD:04535|Vega:OTTHUMG00000099371 4 4p15.1 UDP-glucose 6-dehydrogenase protein-coding UGDH UDP-glucose 6-dehydrogenase O UDP-Glc dehydrogenase|UDP-glucose dehydrogenase|uridine diphospho-glucose dehydrogenase 20121230 -9606 7360 UGP2 - UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 HGNC:12527|MIM:191760|Ensembl:ENSG00000169764|HPRD:08934|Vega:OTTHUMG00000129513 2 2p14-p13 UDP-glucose pyrophosphorylase 2 protein-coding UGP2 UDP-glucose pyrophosphorylase 2 O UDP-glucose diphosphorylase|UDP-glucose pyrophosphorylase 1|UGPase 2|UTP--glucose-1-phosphate uridylyltransferase|UTP--glucose-1-phosphate uridylyltransferase 2|UTP-glucose-1-phosphate uridyltransferase|Uridyl diphosphate glucose pyrophosphorylase-1|uridyl diphosphate glucose pyrophosphorylase 2 20121230 -9606 7361 UGT1A - GNT1|UGT|UGT1|UGT1A@ HGNC:12529 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A complex locus other UGT1A UDP glucuronosyltransferase 1 family, polypeptide A complex locus O - 20121230 -9606 7363 UGT2B4 - HLUG25|UDPGT2B4|UDPGTH1|UGT2B11 HGNC:12553|MIM:600067|Ensembl:ENSG00000156096|HPRD:02507|Vega:OTTHUMG00000058891 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B4 protein-coding UGT2B4 UDP glucuronosyltransferase 2 family, polypeptide B4 O UDP glucuronosyltransferase 2B4|UDP-glucuronosyltransferase 2B4|UDP-glucuronyltransferase, family 2, beta-4|UDPGT 2B4|UDPGTh-1|hyodeoxycholic acid|hyodeoxycholic acid-specific UDPGT 20121230 -9606 7364 UGT2B7 - UDPGT 2B9|UDPGT2B7|UDPGTH2|UGT2B9 HGNC:12554|MIM:600068|Ensembl:ENSG00000171234|HPRD:02508|Vega:OTTHUMG00000129404 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B7 protein-coding UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7 O 3,4-catechol estrogen specific|3,4-catechol estrogen-specific UDPGT|UDP glucuronosyltransferase 2B7|UDP-glucuronosyltransferase 2B7|UDP-glucuronosyltransferase 2B9|UDP-glucuronyltransferase, family 2, beta-7|UDPGT 2B7|UDPGTh-2 20121230 -9606 7365 UGT2B10 - UDPGT2B10 HGNC:12544|MIM:600070|Ensembl:ENSG00000109181|HPRD:07193|Vega:OTTHUMG00000161505 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide B10 protein-coding UGT2B10 UDP glucuronosyltransferase 2 family, polypeptide B10 O UDP glucuronosyltransferase 2B10|UDP-glucuronosyltransferase 2B10|UDPGT 2B10 20121230 -9606 7366 UGT2B15 - HLUG4|UDPGT 2B8|UDPGT2B15|UDPGTH3|UGT2B8 HGNC:12546|MIM:600069|Ensembl:ENSG00000196620|HPRD:07192|Vega:OTTHUMG00000161507 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B15 protein-coding UGT2B15 UDP glucuronosyltransferase 2 family, polypeptide B15 O UDP glycosyltransferase 2B15|UDP-glucuronosyltransferase 2B15|UDP-glucuronosyltransferase 2B8|UDP-glucuronosyltransferase UGT2B15|UDP-glucuronyltransferase, family 2, beta-15|UDPGT 2B15|UDPGTh-3 20121230 -9606 7367 UGT2B17 - UDPGT2B17 HGNC:12547|MIM:601903|Ensembl:ENSG00000197888|HPRD:03545|Vega:OTTHUMG00000129305 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B17 protein-coding UGT2B17 UDP glucuronosyltransferase 2 family, polypeptide B17 O C19-steroid-specific UDP-glucuronosyltransferase|C19-steroid-specific UDPGT|UDP glycosyltransferase 2 family, member B17|UDP-glucuronosyltransferase 2B17|UDP-glucuronyltransferase, family 2, beta-17 20121230 -9606 7368 UGT8 - CGT|UGT4 HGNC:12555|MIM:601291|Ensembl:ENSG00000174607|HPRD:03186|Vega:OTTHUMG00000132915 4 4q26 UDP glycosyltransferase 8 protein-coding UGT8 UDP glycosyltransferase 8 O 2-hydroxyacylsphingosine 1-beta-galactosyltransferase|UDP-galactose ceramide galactosyltransferase|UDP-galactose-ceramide galactosyltransferase|ceramide UDP-galactosyltransferase|cerebroside synthase|uridine diphosphate glycosyltransferase 8 20121230 -9606 7369 UMOD - ADMCKD2|FJHN|HNFJ|HNFJ1|MCKD2|THGP|THP HGNC:12559|MIM:191845|Ensembl:ENSG00000169344|HPRD:11771|Vega:OTTHUMG00000131488 16 16p12.3 uromodulin protein-coding UMOD uromodulin O Tamm-Horsfall glycoprotein|tamm-Horsfall urinary glycoprotein|uromodulin (uromucoid, Tamm-Horsfall glycoprotein)|uromucoid 20121230 -9606 7371 UCK2 - TSA903|UK|UMPK HGNC:12562|MIM:609329|Ensembl:ENSG00000143179|HPRD:01882|Vega:OTTHUMG00000040117 1 1q23 uridine-cytidine kinase 2 protein-coding UCK2 uridine-cytidine kinase 2 O cytidine monophosphokinase 2|testis-specific protein TSA903|uridine kinase|uridine monophosphate kinase|uridine monophosphokinase 2 20121230 -9606 7372 UMPS OK/SW-cl.21 OPRT HGNC:12563|MIM:613891|Ensembl:ENSG00000114491|HPRD:02022|Vega:OTTHUMG00000159431 3 3q13 uridine monophosphate synthetase protein-coding UMPS uridine monophosphate synthetase O OMPdecase|OPRTase|UMP synthase|orotate phosphoribosyltransferase|orotidine 5'-phosphate decarboxylase|uridine 5'-monophosphate synthase 20121230 -9606 7373 COL14A1 - UND HGNC:2191|MIM:120324|Ensembl:ENSG00000187955|HPRD:00379|Vega:OTTHUMG00000149877 8 8q23 collagen, type XIV, alpha 1 protein-coding COL14A1 collagen, type XIV, alpha 1 O collagen alpha-1(XIV) chain|undulin (fibronectin-tenascin-related) 20121230 -9606 7374 UNG - DGU|HIGM4|HIGM5|UDG|UNG1|UNG15|UNG2 HGNC:12572|MIM:191525|Ensembl:ENSG00000076248|HPRD:01881|Vega:OTTHUMG00000169247 12 12q23-q24.1 uracil-DNA glycosylase protein-coding UNG uracil-DNA glycosylase O uracil-DNA glycosylase 1, uracil-DNA glycosylase 2 20121230 -9606 7375 USP4 - UNP|Unph HGNC:12627|MIM:603486|Ensembl:ENSG00000114316|HPRD:04598|Vega:OTTHUMG00000156825 3 3p21.3 ubiquitin specific peptidase 4 (proto-oncogene) protein-coding USP4 ubiquitin specific peptidase 4 (proto-oncogene) O deubiquitinating enzyme 4|ubiquitin carboxyl-terminal esterase 4|ubiquitin carboxyl-terminal hydrolase 4|ubiquitin specific protease 4 (proto-oncogene)|ubiquitin thioesterase 4|ubiquitin thiolesterase 4|ubiquitin-specific processing protease 4|ubiquitous nuclear protein homolog 20121230 -9606 7376 NR1H2 - LXR-b|LXRB|NER|NER-I|RIP15|UNR HGNC:7965|MIM:600380|Ensembl:ENSG00000131408|HPRD:02660 19 19q13.3 nuclear receptor subfamily 1, group H, member 2 protein-coding NR1H2 nuclear receptor subfamily 1, group H, member 2 O LX receptor beta|liver X nuclear receptor beta|nuclear orphan receptor LXR-beta|nuclear receptor NER|oxysterols receptor LXR-beta|steroid hormone-nuclear receptor NER|ubiquitously-expressed nuclear receptor 20121230 -9606 7378 UPP1 - UDRPASE|UP|UPASE|UPP HGNC:12576|MIM:191730|Ensembl:ENSG00000183696|HPRD:08932|Vega:OTTHUMG00000129253 7 7p12.3 uridine phosphorylase 1 protein-coding UPP1 uridine phosphorylase 1 O UPase 1|urdPase 1 20121230 -9606 7379 UPK2 - UP2|UPII HGNC:12579|MIM:611558|Ensembl:ENSG00000110375|HPRD:10295|Vega:OTTHUMG00000166346 11 11q23 uroplakin 2 protein-coding UPK2 uroplakin 2 O uroplakin II|uroplakin-2 20121230 -9606 7380 UPK3A CTA-268H5.10-002 UP3A|UPIII|UPIIIA|UPK3 HGNC:12580|MIM:611559|Ensembl:ENSG00000100373|HPRD:15625|Vega:OTTHUMG00000151339 22 22q13.31 uroplakin 3A protein-coding UPK3A uroplakin 3A O uroplakin III|uroplakin-3a 20121230 -9606 7381 UQCRB - QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC HGNC:12582|MIM:191330|Ensembl:ENSG00000156467|HPRD:11770|Vega:OTTHUMG00000164711 8 8q22 ubiquinol-cytochrome c reductase binding protein protein-coding UQCRB ubiquinol-cytochrome c reductase binding protein O complex III subunit 7|complex III subunit VII|cytochrome b-c1 complex subunit 7|mitochondrial ubiquinone-binding protein|ubiquinol-cytochrome c reductase complex 14 kDa protein|ubiquinol-cytochrome c reductase, complex III subunit VI 20121230 -9606 7384 UQCRC1 - D3S3191|QCR1|UQCR1 HGNC:12585|MIM:191328|Ensembl:ENSG00000010256|HPRD:01875|Vega:OTTHUMG00000133539 3 3p21.3 ubiquinol-cytochrome c reductase core protein I protein-coding UQCRC1 ubiquinol-cytochrome c reductase core protein I O complex III subunit 1|core protein I|cytochrome b-c1 complex subunit 1, mitochondrial|ubiquinol-cytochrome-c reductase complex core protein 1 20121230 -9606 7385 UQCRC2 - QCR2|UQCR2 HGNC:12586|MIM:191329|Ensembl:ENSG00000140740|HPRD:01876|Vega:OTTHUMG00000131585 16 16p12 ubiquinol-cytochrome c reductase core protein II protein-coding UQCRC2 ubiquinol-cytochrome c reductase core protein II O complex III subunit 2|core protein II|cytochrome b-c1 complex subunit 2, mitochondrial|ubiquinol-cytochrome-c reductase complex core protein 2 20121230 -9606 7386 UQCRFS1 - RIP1|RIS1|RISP|UQCR5 HGNC:12587|MIM:191327|Ensembl:ENSG00000169021|HPRD:01874|Vega:OTTHUMG00000181997 19 19q12 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 O Rieske iron-sulfur protein|complex III subunit 5|cytochrome b-c1 complex subunit 5|cytochrome b-c1 complex subunit Rieske, mitochondrial|ubiquinol-cytochrome c reductase iron-sulfur subunit 20121230 -9606 7388 UQCRH - QCR6|UQCR8 HGNC:12590|MIM:613844|Ensembl:ENSG00000173660|HPRD:15629|Vega:OTTHUMG00000007813 1 1p34.1 ubiquinol-cytochrome c reductase hinge protein protein-coding UQCRH ubiquinol-cytochrome c reductase hinge protein O complex III subunit 6|complex III subunit VIII|cytochrome b-c1 complex subunit 6, mitochondrial|cytochrome c1 non-heme 11 kDa protein|mitochondrial hinge protein|ubiquinol-cytochrome c reductase complex 11 kDa protein|ubiquinol-cytochrome c reductase, complex III subunit VIII 20121230 -9606 7389 UROD RP11-69J16.2 PCT|UPD HGNC:12591|MIM:613521|Ensembl:ENSG00000126088|HPRD:01441|Vega:OTTHUMG00000008949 1 1p34 uroporphyrinogen decarboxylase protein-coding UROD uroporphyrinogen decarboxylase O uroporphyrinogen III decarboxylase 20121230 -9606 7390 UROS RP11-124H7.1 UROIIIS HGNC:12592|MIM:606938|Ensembl:ENSG00000188690|HPRD:06087|Vega:OTTHUMG00000019236 10 10q25.2-q26.3 uroporphyrinogen III synthase protein-coding UROS uroporphyrinogen III synthase O hydroxymethylbilane hydrolyase|uroporphyrinogen-III cosynthase|uroporphyrinogen-III synthase 20121230 -9606 7391 USF1 RP11-544M22.5 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 HGNC:12593|MIM:191523|Ensembl:ENSG00000158773|HPRD:01880|Vega:OTTHUMG00000031472 1 1q22-q23 upstream transcription factor 1 protein-coding USF1 upstream transcription factor 1 O class B basic helix-loop-helix protein 11|major late transcription factor 1|upstream stimulatory factor 1 20121230 -9606 7392 USF2 - FIP|bHLHb12 HGNC:12594|MIM:600390|Ensembl:ENSG00000105698|HPRD:02668 19 19q13 upstream transcription factor 2, c-fos interacting protein-coding USF2 upstream transcription factor 2, c-fos interacting O FOS-interacting protein|c-fos interacting protein|class B basic helix-loop-helix protein 12|major late transcription factor 2|upstream stimulatory factor 2 20121230 -9606 7393 USH1A - USH1 HGNC:12595|MIM:276900 14 14q32 Usher syndrome 1A (autosomal recessive, severe) unknown USH1A Usher syndrome 1A (autosomal recessive, severe) O - 20110805 -9606 7396 USH1E - - HGNC:12599|MIM:602097 21 21q21 Usher syndrome 1E (autosomal recessive, severe) unknown USH1E Usher syndrome 1E (autosomal recessive, severe) O - 20120622 -9606 7398 USP1 - UBP HGNC:12607|MIM:603478|Ensembl:ENSG00000162607|HPRD:04593|Vega:OTTHUMG00000008972 1 1p31.3 ubiquitin specific peptidase 1 protein-coding USP1 ubiquitin specific peptidase 1 O deubiquitinating enzyme 1|hUBP|ubiquitin carboxyl terminal hydrolase 1|ubiquitin carboxyl-terminal hydrolase 1|ubiquitin specific processing protease 1|ubiquitin specific protease 1|ubiquitin thioesterase 1|ubiquitin thiolesterase 1|ubiquitin-specific-processing protease 1 20121230 -9606 7399 USH2A - RP39|US2|USH2|dJ1111A8.1 HGNC:12601|MIM:608400|Ensembl:ENSG00000042781|HPRD:02042|HPRD:09759|Vega:OTTHUMG00000037079 1 1q41 Usher syndrome 2A (autosomal recessive, mild) protein-coding USH2A Usher syndrome 2A (autosomal recessive, mild) O usher syndrome type IIa protein|usher syndrome type-2A protein|usherin 20121230 -9606 7401 CLRN1 - RP61|USH3|USH3A HGNC:12605|MIM:606397|Ensembl:ENSG00000163646|HPRD:05905|Vega:OTTHUMG00000140368 3 3q25 clarin 1 protein-coding CLRN1 clarin 1 O Usher syndrome type-3 protein|clarin-1 20121230 -9606 7402 UTRN RP11-352E13.1 DMDL|DRP|DRP1 HGNC:12635|MIM:128240|Ensembl:ENSG00000152818|HPRD:00547|Vega:OTTHUMG00000015746 6 6q24 utrophin protein-coding UTRN utrophin O DRP-1|dystrophin-related protein 1 20121230 -9606 7403 KDM6A RP13-886N14.3 KABUK2|UTX|bA386N14.2 HGNC:12637|MIM:300128|Ensembl:ENSG00000147050|HPRD:02131|Vega:OTTHUMG00000021402 X Xp11.2 lysine (K)-specific demethylase 6A protein-coding KDM6A lysine (K)-specific demethylase 6A O bA386N14.2 (ubiquitously transcribed X chromosome tetratricopeptide repeat protein (UTX))|histone demethylase UTX|lysine-specific demethylase 6A|ubiquitously transcribed TPR protein on the X chromosome|ubiquitously transcribed X chromosome tetratricopeptide repeat protein|ubiquitously transcribed tetratricopeptide repeat protein X-linked|ubiquitously-transcribed TPR gene on the X chromosome|ubiquitously-transcribed TPR protein on the X chromosome|ubiquitously-transcribed X chromosome tetratricopeptide repeat protein 20121230 -9606 7404 UTY - UTY1 HGNC:12638|MIM:400009|Ensembl:ENSG00000183878|HPRD:02451|Vega:OTTHUMG00000036319 Y Yq11 ubiquitously transcribed tetratricopeptide repeat containing, Y-linked protein-coding UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked O histone demethylase UTY|ubiquitous TPR motif protein UTY|ubiquitously transcribed TPR gene on Y chromosome|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome|ubiquitously transcribed tetratricopeptide repeat gene, Y-linked|ubiquitously-transcribed TPR protein on the Y chromosome|ubiquitously-transcribed Y chromosome tetratricopeptide repeat protein 20121230 -9606 7405 UVRAG - DHTX|VPS38|p63 HGNC:12640|MIM:602493|Ensembl:ENSG00000198382|HPRD:03929|Vega:OTTHUMG00000165319 11 11q13.5 UV radiation resistance associated protein-coding UVRAG UV radiation resistance associated O UV radiation resistance-associated gene protein|beclin 1 binding protein|disrupted in heterotaxy 20121230 -9606 7407 VARS DAAP-21F2.2 G7A|VARS1|VARS2 HGNC:12651|MIM:192150|Ensembl:ENSG00000204394|HPRD:10362|Vega:OTTHUMG00000031286 6 6p21.3 valyl-tRNA synthetase protein-coding VARS valyl-tRNA synthetase O protein G7a|valRS|valine tRNA ligase 1, cytoplasmic|valine--tRNA ligase|valyl-tRNA synthetase 2 20121230 -9606 7408 VASP - - HGNC:12652|MIM:601703|Ensembl:ENSG00000125753|HPRD:03415|Vega:OTTHUMG00000182124 19 19q13.32 vasodilator-stimulated phosphoprotein protein-coding VASP vasodilator-stimulated phosphoprotein O - 20121230 -9606 7409 VAV1 - VAV HGNC:12657|MIM:164875|Ensembl:ENSG00000141968|HPRD:01284 19 19p13.2 vav 1 guanine nucleotide exchange factor protein-coding VAV1 vav 1 guanine nucleotide exchange factor O proto-oncogene vav|vav 1 oncogene 20121230 -9606 7410 VAV2 - VAV-2 HGNC:12658|MIM:600428|Ensembl:ENSG00000160293|HPRD:02694|Vega:OTTHUMG00000020882 9 9q34.1 vav 2 guanine nucleotide exchange factor protein-coding VAV2 vav 2 guanine nucleotide exchange factor O guanine nucleotide exchange factor VAV2|vav 2 oncogene 20121230 -9606 7411 VBP1 RP13-228J13.4 PFD3|PFDN3|VBP-1 HGNC:12662|MIM:300133|Ensembl:ENSG00000155959|HPRD:02135|Vega:OTTHUMG00000022666 X Xq28 von Hippel-Lindau binding protein 1 protein-coding VBP1 von Hippel-Lindau binding protein 1 O HIBBJ46|VHL binding protein-1|VHL-binding protein 1|prefoldin 3|prefoldin subunit 3|von Hippel-Lindau-binding protein 1 20121230 -9606 7412 VCAM1 - CD106|INCAM-100 HGNC:12663|MIM:192225|Ensembl:ENSG00000162692|HPRD:01888|Vega:OTTHUMG00000010982 1 1p32-p31 vascular cell adhesion molecule 1 protein-coding VCAM1 vascular cell adhesion molecule 1 O CD106 antigen|vascular cell adhesion protein 1 20121230 -9606 7413 VCF - CATCH22 HGNC:12664 22 22q11.21-q11.23 velocardiofacial syndrome unknown VCF velocardiofacial syndrome O - 20110714 -9606 7414 VCL RP11-178G16.3 CMD1W|CMH15|MVCL HGNC:12665|MIM:193065|Ensembl:ENSG00000035403|HPRD:01900|Vega:OTTHUMG00000018498 10 10q22.2 vinculin protein-coding VCL vinculin O metavinculin 20121230 -9606 7415 VCP - ALS14|IBMPFD|TERA|p97 HGNC:12666|MIM:601023|Ensembl:ENSG00000165280|HPRD:03013|Vega:OTTHUMG00000019855 9 9p13.3 valosin containing protein protein-coding VCP valosin containing protein O 15S Mg(2+)-ATPase p97 subunit|TER ATPase|transitional endoplasmic reticulum ATPase|valosin-containing protein|yeast Cdc48p homolog 20121230 -9606 7416 VDAC1 - PORIN|VDAC-1 HGNC:12669|MIM:604492|Ensembl:ENSG00000213585|HPRD:05137|Vega:OTTHUMG00000129118 5 5q31 voltage-dependent anion channel 1 protein-coding VDAC1 voltage-dependent anion channel 1 O outer mitochondrial membrane protein porin 1|plasmalemmal porin|porin 31HL|porin 31HM|voltage-dependent anion-selective channel protein 1 20121230 -9606 7417 VDAC2 RP11-375G3.1 POR HGNC:12672|MIM:193245|Ensembl:ENSG00000165637|HPRD:01904|Vega:OTTHUMG00000018517 10 10q22 voltage-dependent anion channel 2 protein-coding VDAC2 voltage-dependent anion channel 2 O outer mitochondrial membrane protein porin 2|voltage-dependent anion-selective channel protein 2 20121230 -9606 7418 VDAC1P4 - VDAC4|VDAC4P HGNC:12675|MIM:610030 1 1q24-q25 voltage-dependent anion channel 1 pseudogene 4 pseudo VDAC1P4 voltage-dependent anion channel 1 pseudogene 4 O - 20121230 -9606 7419 VDAC3 - HD-VDAC3|VDAC-3 HGNC:12674|MIM:610029|Ensembl:ENSG00000078668|HPRD:06750|Vega:OTTHUMG00000164168 8 8p11.2 voltage-dependent anion channel 3 protein-coding VDAC3 voltage-dependent anion channel 3 O outer mitochondrial membrane protein porin 3|voltage-dependent anion-selective channel protein 3 20121230 -9606 7420 VDI - DIPI HGNC:12678|MIM:125260 16 - vesicular stomatitis virus defective interfering particle suppression unknown VDI vesicular stomatitis virus defective interfering particle suppression O - 20110215 -9606 7421 VDR - NR1I1 HGNC:12679|MIM:601769|Ensembl:ENSG00000111424|HPRD:03463|Vega:OTTHUMG00000169890 12 12q13.11 vitamin D (1,25- dihydroxyvitamin D3) receptor protein-coding VDR vitamin D (1,25- dihydroxyvitamin D3) receptor O 1,25-dihydroxyvitamin D3 receptor|nuclear receptor subfamily 1 group I member 1|vitamin D nuclear receptor variant 1|vitamin D3 receptor 20121230 -9606 7422 VEGFA RP1-261G23.1 MVCD1|VEGF|VPF HGNC:12680|MIM:192240|Ensembl:ENSG00000112715|HPRD:01889|Vega:OTTHUMG00000014745 6 6p12 vascular endothelial growth factor A protein-coding VEGFA vascular endothelial growth factor A O vascular permeability factor 20121230 -9606 7423 VEGFB - VEGFL|VRF HGNC:12681|MIM:601398|Ensembl:ENSG00000173511|HPRD:03237|Vega:OTTHUMG00000167813 11 11q13 vascular endothelial growth factor B protein-coding VEGFB vascular endothelial growth factor B O VEGF-related factor 20121230 -9606 7424 VEGFC - Flt4-L|VRP HGNC:12682|MIM:601528|Ensembl:ENSG00000150630|HPRD:03317|Vega:OTTHUMG00000160734 4 4q34.3 vascular endothelial growth factor C protein-coding VEGFC vascular endothelial growth factor C O FLT4 ligand DHM|VEGF-C|vascular endothelial growth factor-related protein 20121230 -9606 7425 VGF - - HGNC:12684|MIM:602186|Ensembl:ENSG00000128564|HPRD:03717|Vega:OTTHUMG00000157109 7 7q22.1 VGF nerve growth factor inducible protein-coding VGF VGF nerve growth factor inducible O neuro-endocrine specific protein VGF|neurosecretory protein VGF 20121230 -9606 7428 VHL - HRCA1|RCA1|VHL1|pVHL HGNC:12687|MIM:608537|Ensembl:ENSG00000134086|HPRD:01905|Vega:OTTHUMG00000128668 3 3p25.3 von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase protein-coding VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase O elongin binding protein|protein G7|von Hippel-Lindau disease tumor suppressor 20121230 -9606 7429 VIL1 - D2S1471|VIL HGNC:12690|MIM:193040|Ensembl:ENSG00000127831|HPRD:01898|Vega:OTTHUMG00000133112 2 2q35 villin 1 protein-coding VIL1 villin 1 O villin-1 20121230 -9606 7430 EZR - CVIL|CVL|VIL2 HGNC:12691|MIM:123900|Ensembl:ENSG00000092820|HPRD:00475|Vega:OTTHUMG00000015917 6 6q25.3 ezrin protein-coding EZR ezrin O cytovillin 2|p81|villin 2 (ezrin)|villin-2 20121230 -9606 7431 VIM RP11-124N14.1 - HGNC:12692|MIM:193060|Ensembl:ENSG00000026025|HPRD:01899|Vega:OTTHUMG00000017744 10 10p13 vimentin protein-coding VIM vimentin O - 20121230 -9606 7432 VIP RP4-546K19.1 PHM27 HGNC:12693|MIM:192320|Ensembl:ENSG00000146469|HPRD:15950|Vega:OTTHUMG00000015851 6 6q25 vasoactive intestinal peptide protein-coding VIP vasoactive intestinal peptide O VIP peptides 20121230 -9606 7433 VIPR1 - HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R HGNC:12694|MIM:192321|Ensembl:ENSG00000114812|HPRD:01890|Vega:OTTHUMG00000131792 3 3p22 vasoactive intestinal peptide receptor 1 protein-coding VIPR1 vasoactive intestinal peptide receptor 1 O PACAP type II receptor|VIP and PACAP receptor 1|VIP receptor, type I|pituitary adenylate cyclase activating polypeptide receptor, type II|vasoactive intestinal polypeptide receptor 1 20121230 -9606 7434 VIPR2 tcag7.561 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R HGNC:12695|MIM:601970|Ensembl:ENSG00000106018|HPRD:03576|Vega:OTTHUMG00000151446 7 7q36.3 vasoactive intestinal peptide receptor 2 protein-coding VIPR2 vasoactive intestinal peptide receptor 2 O PACAP type III receptor|VIP and PACAP receptor 2|helodermin-preferring VIP receptor|pituitary adenylate cyclase-activating polypeptide type III receptor|vasoactive intestinal polypeptide receptor 2 20121230 -9606 7435 VIS1 - HIS1 HGNC:12696|MIM:164755 2 2q14-q21 viral integration site 1 other VIS1 viral integration site 1 O - 20080828 -9606 7436 VLDLR RP11-320E16.1 CARMQ1|CHRMQ1|VLDLRCH HGNC:12698|MIM:192977|Ensembl:ENSG00000147852|HPRD:01895|Vega:OTTHUMG00000019447 9 9p24 very low density lipoprotein receptor protein-coding VLDLR very low density lipoprotein receptor O VLDL receptor|VLDL-R|very low-density lipoprotein receptor 20121230 -9606 7438 VMD1 - - HGNC:12702|MIM:153840 - - vitelliform macular dystrophy, atypical unknown VMD1 vitelliform macular dystrophy, atypical O - 20120622 -9606 7439 BEST1 - ARB|BEST|BMD|RP50|TU15B|VMD2 HGNC:12703|MIM:607854|Ensembl:ENSG00000167995|HPRD:01094|Vega:OTTHUMG00000167469 11 11q13 bestrophin 1 protein-coding BEST1 bestrophin 1 O Best disease|Best1V1Delta2|bestrophin-1|vitelliform macular dystrophy protein 2 20121230 -9606 7441 VPREB1 - IGI|IGVPB|VPREB HGNC:12709|MIM:605141|Ensembl:ENSG00000169575|HPRD:05505|IMGT/GENE-DB:VPREB1|Vega:OTTHUMG00000151042 22 22q11.22 pre-B lymphocyte 1 protein-coding VPREB1 pre-B lymphocyte 1 O CD179 antigen-like family member A|CD179a|immunoglobulin iota chain|v(pre)B protein 20121230 -9606 7442 TRPV1 - VR1 HGNC:12716|MIM:602076|Ensembl:ENSG00000196689|Ensembl:ENSG00000262304|HPRD:03648|Vega:OTTHUMG00000177649|Vega:OTTHUMG00000177650 17 17p13.2 transient receptor potential cation channel, subfamily V, member 1 protein-coding TRPV1 transient receptor potential cation channel, subfamily V, member 1 O OTRPC1|capsaicin receptor|osm-9-like TRP channel 1|transient receptor potential cation channel subfamily V member 1|transient receptor potential vanilloid 1a|transient receptor potential vanilloid 1b|vanilloid receptor subtype 1 20121230 -9606 7443 VRK1 - PCH1|PCH1A HGNC:12718|MIM:602168|Ensembl:ENSG00000100749|HPRD:03701|Vega:OTTHUMG00000171459 14 14q32 vaccinia related kinase 1 protein-coding VRK1 vaccinia related kinase 1 O serine/threonine-protein kinase VRK1|vaccinia virus B1R-related kinase 1|vaccinia-related kinase 1 20121230 -9606 7444 VRK2 - - HGNC:12719|MIM:602169|Ensembl:ENSG00000028116|HPRD:03702|Vega:OTTHUMG00000129348 2 2p16.1 vaccinia related kinase 2 protein-coding VRK2 vaccinia related kinase 2 O serine/threonine-protein kinase VRK2|vaccinia virus B1R-related kinase 2 20121230 -9606 7445 VRNI - ADNIV HGNC:12720|MIM:193235 11 11q13 vitreoretinopathy, neovascular inflammatory unknown VRNI vitreoretinopathy, neovascular inflammatory O - 20120622 -9606 7446 AVSD1 - AVCD|AVCD1|AVSD|VSD1 HGNC:12721|MIM:606215 1 1p31-p21 atrioventricular septal defect 1 unknown AVSD1 atrioventricular septal defect 1 O - 20120622 -9606 7447 VSNL1 - HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 HGNC:12722|MIM:600817|Ensembl:ENSG00000163032|HPRD:02890|Vega:OTTHUMG00000090645 2 2p24.3 visinin-like 1 protein-coding VSNL1 visinin-like 1 O VLP-1|hippocalcin-like protein 3|visinin-like protein 1 20121230 -9606 7448 VTN - V75|VN|VNT HGNC:12724|MIM:193190|Ensembl:ENSG00000255604|HPRD:01902|Vega:OTTHUMG00000132500 17 17q11 vitronectin protein-coding VTN vitronectin O S-protein|complement S-protein|epibolin|serum spreading factor|serum-spreading factor|somatomedin B 20121230 -9606 7450 VWF - F8VWF|VWD HGNC:12726|MIM:613160|Ensembl:ENSG00000110799|HPRD:01906|Vega:OTTHUMG00000168265 12 12p13.3 von Willebrand factor protein-coding VWF von Willebrand factor O coagulation factor VIII VWF 20121230 -9606 7451 VWFP1 - F8VWFL|F8VWFP|VWFP HGNC:12727 22 22q11.1 von Willebrand factor pseudogene 1 pseudo VWFP1 von Willebrand factor pseudogene 1 O - 20121230 -9606 7453 WARS - GAMMA-2|IFI53|IFP53 HGNC:12729|MIM:191050|Ensembl:ENSG00000140105|HPRD:01845|Vega:OTTHUMG00000171572 14 14q32.31 tryptophanyl-tRNA synthetase protein-coding WARS tryptophanyl-tRNA synthetase O hWRS|interferon-induced protein 53|trpRS|tryptophan tRNA ligase 1, cytoplasmic|tryptophan--tRNA ligase, cytoplasmic 20121230 -9606 7454 WAS - IMD2|SCNX|THC|THC1|WASP HGNC:12731|MIM:300392|Ensembl:ENSG00000015285|HPRD:02314|Vega:OTTHUMG00000034483 X Xp11.4-p11.21 Wiskott-Aldrich syndrome protein-coding WAS Wiskott-Aldrich syndrome O eczema-thrombocytopenia|thrombocytopenia 1 (X-linked)|wiskott-Aldrich syndrome protein 20121230 -9606 7455 ZAN - - HGNC:12857|MIM:602372|Ensembl:ENSG00000146839|HPRD:03846|Vega:OTTHUMG00000157037 7 7q22 zonadhesin protein-coding ZAN zonadhesin O - 20121230 -9606 7456 WIPF1 - PRPL-2|WASPIP|WIP HGNC:12736|MIM:602357|Ensembl:ENSG00000115935|HPRD:03835|Vega:OTTHUMG00000132334 2 2q31.1 WAS/WASL interacting protein family, member 1 protein-coding WIPF1 WAS/WASL interacting protein family, member 1 O WAS/WASL-interacting protein family member 1|WASP-interacting protein|Wiskott-Aldrich syndrome protein interacting protein|protein PRPL-2 20121230 -9606 7457 WBS2 - WBS|WS HGNC:12740 4 4q33-q35.1 Williams-Beuren syndrome type 2 unknown WBS2 Williams-Beuren syndrome type 2 O - 20110714 -9606 7458 EIF4H - WBSCR1|WSCR1|eIF-4H HGNC:12741|MIM:603431|Ensembl:ENSG00000106682|HPRD:11940|Vega:OTTHUMG00000023025 7 7q11.23 eukaryotic translation initiation factor 4H protein-coding EIF4H eukaryotic translation initiation factor 4H O Williams-Beuren syndrome chromosome region 1 20121230 -9606 7459 WBSCR2 - WSCR2 HGNC:12746 7 7q11.23 Williams-Beuren syndrome chromosome region 2 other WBSCR2 Williams-Beuren syndrome chromosome region 2 O - 20080828 -9606 7461 CLIP2 - CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 HGNC:2586|MIM:603432|Ensembl:ENSG00000106665|HPRD:09140|Vega:OTTHUMG00000022980 7 7q11.23 CAP-GLY domain containing linker protein 2 protein-coding CLIP2 CAP-GLY domain containing linker protein 2 O CAP-Gly domain-containing linker protein 2|Williams-Beuren syndrome chromosome region 3|Williams-Beuren syndrome chromosome region 4|cytoplasmic linker 2|cytoplasmic linker protein 115|cytoplasmic linker protein 2|williams-Beuren syndrome chromosomal region 3 protein|williams-Beuren syndrome chromosomal region 4 protein 20121230 -9606 7462 LAT2 HSPC046 LAB|NTAL|WBSCR15|WBSCR5|WSCR5 HGNC:12749|MIM:605719|Ensembl:ENSG00000086730|HPRD:09304|Vega:OTTHUMG00000130151 7 7q11.23 linker for activation of T cells family, member 2 protein-coding LAT2 linker for activation of T cells family, member 2 O Williams-Beuren syndrome chromosomal region 15 protein|Williams-Beuren syndrome chromosomal region 5 protein|linker for activation of B-cells|linker for activation of T cells, transmembrane adaptor 2|linker for activation of T-cells family member 2|membrane-associated adapter molecule|non-T-cell activation linker 20121230 -9606 7464 CORO2A - CLIPINB|IR10|WDR2 HGNC:2255|MIM:602159|Ensembl:ENSG00000106789|HPRD:03695|Vega:OTTHUMG00000020340 9 9q22.3 coronin, actin binding protein, 2A protein-coding CORO2A coronin, actin binding protein, 2A O WD protein IR10|WD repeat-containing protein 2|WD-repeat protein 2|coronin 2A|coronin, actin-binding protein, 2A|coronin-2A|coronin-like protein B 20121230 -9606 7465 WEE1 - WEE1A|WEE1hu HGNC:12761|MIM:193525|Ensembl:ENSG00000166483|HPRD:01907|Vega:OTTHUMG00000165863 11 11p15.3-p15.1 WEE1 homolog (S. pombe) protein-coding WEE1 WEE1 homolog (S. pombe) O WEE1+ homolog|wee1-like protein kinase|wee1A kinase 20121230 -9606 7466 WFS1 - WFRS|WFS|WFSL HGNC:12762|MIM:606201|Ensembl:ENSG00000109501|HPRD:05864|Vega:OTTHUMG00000090431 4 4p16.1 Wolfram syndrome 1 (wolframin) protein-coding WFS1 Wolfram syndrome 1 (wolframin) O wolframin 20121230 -9606 7467 WHCR - PRDS HGNC:12764|MIM:194190 4 4p16 Wolf-Hirschhorn syndrome chromosome region other WHCR Wolf-Hirschhorn syndrome chromosome region O - 20121220 -9606 7468 WHSC1 RP11-262P20.3 MMSET|NSD2|REIIBP|TRX5|WHS HGNC:12766|MIM:602952|Ensembl:ENSG00000109685|HPRD:04259|Vega:OTTHUMG00000121147 4 4p16.3 Wolf-Hirschhorn syndrome candidate 1 protein-coding WHSC1 Wolf-Hirschhorn syndrome candidate 1 O IL5 promoter REII region-binding protein|histone-lysine N-methyltransferase NSD2|multiple myeloma SET domain containing protein type III|nuclear SET domain-containing protein 2|probable histone-lysine N-methyltransferase NSD2|trithorax/ash1-related protein 5 20121230 -9606 7469 WHSC2 P/OKcl.15 NELF-A|NELFA HGNC:12768|MIM:606026|Ensembl:ENSG00000185049|HPRD:12080|Vega:OTTHUMG00000089967 4 4p16.3 Wolf-Hirschhorn syndrome candidate 2 protein-coding WHSC2 Wolf-Hirschhorn syndrome candidate 2 O negative elongation factor A|wolf-Hirschhorn syndrome candidate 2 protein 20121230 -9606 7471 WNT1 - INT1 HGNC:12774|MIM:164820|Ensembl:ENSG00000125084|HPRD:01276|Vega:OTTHUMG00000170403 12 12q13 wingless-type MMTV integration site family, member 1 protein-coding WNT1 wingless-type MMTV integration site family, member 1 O proto-oncogene Int-1 homolog|proto-oncogene Wnt-1|wingless-type MMTV integration site family, member 1 (oncogene INT1) 20121230 -9606 7472 WNT2 - INT1L1|IRP HGNC:12780|MIM:147870|Ensembl:ENSG00000105989|HPRD:00999|Vega:OTTHUMG00000023428 7 7q31.2 wingless-type MMTV integration site family member 2 protein-coding WNT2 wingless-type MMTV integration site family member 2 O Int-1-related protein|int-1-like protein 1|protein Wnt-2|secreted growth factor 20121230 -9606 7473 WNT3 - INT4 HGNC:12782|MIM:165330|Ensembl:ENSG00000108379|HPRD:01318|Vega:OTTHUMG00000178076 17 17q21 wingless-type MMTV integration site family, member 3 protein-coding WNT3 wingless-type MMTV integration site family, member 3 O WNT-3 proto-oncogene protein|proto-oncogene Int-4 homolog|proto-oncogene Wnt-3 20121230 -9606 7474 WNT5A - hWNT5A HGNC:12784|MIM:164975|Ensembl:ENSG00000114251|HPRD:01293|Vega:OTTHUMG00000158361 3 3p21-p14 wingless-type MMTV integration site family, member 5A protein-coding WNT5A wingless-type MMTV integration site family, member 5A O WNT-5A protein|protein Wnt-5a 20121230 -9606 7475 WNT6 - - HGNC:12785|MIM:604663|Ensembl:ENSG00000115596|HPRD:05233|Vega:OTTHUMG00000133082 2 2q35 wingless-type MMTV integration site family, member 6 protein-coding WNT6 wingless-type MMTV integration site family, member 6 O protein Wnt-6 20121230 -9606 7476 WNT7A - - HGNC:12786|MIM:601570|Ensembl:ENSG00000154764|HPRD:03341|Vega:OTTHUMG00000129803 3 3p25 wingless-type MMTV integration site family, member 7A protein-coding WNT7A wingless-type MMTV integration site family, member 7A O protein Wnt-7a|proto-oncogene Wnt7a protein 20121230 -9606 7477 WNT7B RP11-435J19.1 - HGNC:12787|MIM:601967|Ensembl:ENSG00000188064|HPRD:03573|Vega:OTTHUMG00000154636 22 22q13 wingless-type MMTV integration site family, member 7B protein-coding WNT7B wingless-type MMTV integration site family, member 7B O protein Wnt-7b 20121230 -9606 7478 WNT8A - WNT8D HGNC:12788|MIM:606360|Ensembl:ENSG00000061492|HPRD:05898|Vega:OTTHUMG00000129196 5 5q31 wingless-type MMTV integration site family, member 8A protein-coding WNT8A wingless-type MMTV integration site family, member 8A O WNT8d|protein Wnt-8a|protein Wnt-8d 20121230 -9606 7479 WNT8B - - HGNC:12789|MIM:601396|Ensembl:ENSG00000075290|HPRD:03235|Vega:OTTHUMG00000018912 10 10q24 wingless-type MMTV integration site family, member 8B protein-coding WNT8B wingless-type MMTV integration site family, member 8B O protein Wnt-8b 20121230 -9606 7480 WNT10B - SHFM6|WNT-12 HGNC:12775|MIM:601906|Ensembl:ENSG00000169884|HPRD:03548|Vega:OTTHUMG00000150734 12 12q13 wingless-type MMTV integration site family, member 10B protein-coding WNT10B wingless-type MMTV integration site family, member 10B O WNT-10B protein|protein Wnt-10b 20121230 -9606 7481 WNT11 - HWNT11 HGNC:12776|MIM:603699|Ensembl:ENSG00000085741|HPRD:04741|Vega:OTTHUMG00000165264 11 11q13.5 wingless-type MMTV integration site family, member 11 protein-coding WNT11 wingless-type MMTV integration site family, member 11 O protein Wnt-11 20121230 -9606 7482 WNT2B - WNT13|XWNT2 HGNC:12781|MIM:601968|Ensembl:ENSG00000134245|HPRD:03574|Vega:OTTHUMG00000011157 1 1p13 wingless-type MMTV integration site family, member 2B protein-coding WNT2B wingless-type MMTV integration site family, member 2B O XWNT2, Xenopus, homolog of|protein Wnt-2b|wingless-type MMTV integration site family, member 13 20121230 -9606 7483 WNT9A - WNT14 HGNC:12778|MIM:602863|Ensembl:ENSG00000143816|HPRD:04179|Vega:OTTHUMG00000037592 1 1q42 wingless-type MMTV integration site family, member 9A protein-coding WNT9A wingless-type MMTV integration site family, member 9A O protein Wnt-9a|wingless-type MMTV integration site family, member 14 20121230 -9606 7484 WNT9B UNQ6973/PRO21956 WNT14B|WNT15 HGNC:12779|MIM:602864|Ensembl:ENSG00000158955|HPRD:04180|Vega:OTTHUMG00000178077 17 17q21 wingless-type MMTV integration site family, member 9B protein-coding WNT9B wingless-type MMTV integration site family, member 9B O protein Wnt-14b|protein Wnt-9b|wingless-type MMTV integration site family, member 15 20121230 -9606 7485 WRB - CHD5 HGNC:12790|MIM:602915|Ensembl:ENSG00000182093|HPRD:04224|Vega:OTTHUMG00000066250 21 21q22.3 tryptophan rich basic protein protein-coding WRB tryptophan rich basic protein O congenital heart disease 5 protein|tail-anchored protein insertion receptor WRB|tryptophan-rich basic protein|tryptophan-rich protein 20121230 -9606 7486 WRN - RECQ3|RECQL2|RECQL3 HGNC:12791|MIM:604611|Ensembl:ENSG00000165392|HPRD:05212|Vega:OTTHUMG00000163894 8 8p12 Werner syndrome, RecQ helicase-like protein-coding WRN Werner syndrome, RecQ helicase-like O DNA helicase, RecQ-like type 3|Werner syndrome ATP-dependent helicase|exonuclease WRN|recQ protein-like 2 20121230 -9606 7488 WS2B - - HGNC:12794|MIM:600193 1 1p21-p13.3 Waardenburg syndrome, type 2B unknown WS2B Waardenburg syndrome, type 2B O - 20120622 -9606 7489 WSN - BGMR HGNC:12795|MIM:311510 X Xq27.3-qter Waisman syndrome unknown WSN Waisman syndrome O - 20120622 -9606 7490 WT1 - AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 HGNC:12796|MIM:607102|Ensembl:ENSG00000184937|HPRD:06163|Vega:OTTHUMG00000039556 11 11p13 Wilms tumor 1 protein-coding WT1 Wilms tumor 1 O Wilms tumor protein|amino-terminal domain of EWS|last three zinc fingers of the DNA-binding domain of WT1 20121230 -9606 7491 WT2 - ADCR|MTACR1 HGNC:12797|MIM:194071 11 11p15.5 Wilms tumor 2 unknown WT2 Wilms tumor 2 O - 20120913 -9606 7492 WTS - MRXS6 HGNC:12798|MIM:309585 X Xp11.3-q21 Wilson-Turner X-linked mental retardation syndrome unknown WTS Wilson-Turner X-linked mental retardation syndrome O - 20120622 -9606 7493 WWS - - HGNC:12800|MIM:314580 X Xq11-q22 Wieacker-Wolff syndrome unknown WWS Wieacker-Wolff syndrome O - 20120622 -9606 7494 XBP1 - TREB5|XBP-1|XBP2 HGNC:12801|MIM:194355|Ensembl:ENSG00000100219|HPRD:01908|Vega:OTTHUMG00000151094 22 22q12.1|22q12 X-box binding protein 1 protein-coding XBP1 X-box binding protein 1 O X-box-binding protein 1|tax-responsive element-binding protein 5 20121230 -9606 7495 XBP1P1 - XBP|XBP1|XBPP1 HGNC:12802 5 5q22.2 X-box binding protein 1 pseudogene 1 pseudo XBP1P1 X-box binding protein 1 pseudogene 1 O - 20121230 -9606 7497 XCE - XCA|XITE HGNC:12804|MIM:300074 X Xq13 X chromosome controlling element other XCE X chromosome controlling element O - 20110324 -9606 7498 XDH - XO|XOR HGNC:12805|MIM:607633|Ensembl:ENSG00000158125|HPRD:06363|Vega:OTTHUMG00000099385 2 2p23.1 xanthine dehydrogenase protein-coding XDH xanthine dehydrogenase O xanthene dehydrogenase|xanthine dehydrogenase/oxidase|xanthine oxidase|xanthine oxidoreductase 20121230 -9606 7499 XG - PBDX HGNC:12806|MIM:300879|Ensembl:ENSG00000124343|HPRD:02443|Vega:OTTHUMG00000021075 X Xp22.33 Xg blood group protein-coding XG Xg blood group O XG glycoprotein|Xg blood group (pseudoautosomal boundary-divided on the X chromosome)|glycoprotein Xg 20121230 -9606 7500 XGPY - XGPY1 HGNC:12807 Y Yq11.21 Xg pseudogene, Y-linked pseudo XGPY Xg pseudogene, Y-linked O - 20121230 -9606 7501 XGR - YG HGNC:12808|MIM:314705|MIM:489500 X|Y Xp22.32 and Yp11 XG and CD99 regulator other XGR XG and CD99 regulator O - 20110702 -9606 7502 XIC - SXI1|XCE|XIST HGNC:12809 X Xq12-q13 X chromosome inactivation center other XIC X chromosome inactivation center O - 20080828 -9606 7503 XIST - DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 HGNC:12810|MIM:314670 X Xq13.2 X (inactive)-specific transcript (non-protein coding) miscRNA XIST X (inactive)-specific transcript (non-protein coding) O - 20121230 -9606 7504 XK - KX|MCLDS|X1k|XKR1 HGNC:12811|MIM:314850|Ensembl:ENSG00000047597|HPRD:02444|Vega:OTTHUMG00000033171 X Xp21.1 X-linked Kx blood group (McLeod syndrome) protein-coding XK X-linked Kx blood group (McLeod syndrome) O Kell blood group precursor (McLeod phenotype)|Kx antigen|XK, Kell blood group complex subunit (McLeod syndrome)|XK-related protein 1|kell complex 37 kDa component|membrane transport protein XK 20121230 -9606 7506 XM - - HGNC:12813|MIM:314900 X Xq28 Xm(a) antigen unknown XM Xm(a) antigen O - 20110215 -9606 7507 XPA - XP1|XPAC HGNC:12814|MIM:611153|Ensembl:ENSG00000136936|HPRD:02045|Vega:OTTHUMG00000020330 9 9q22.3 xeroderma pigmentosum, complementation group A protein-coding XPA xeroderma pigmentosum, complementation group A O DNA repair protein complementing XP-A cells|excision repair-controlling|xeroderma pigmentosum group A-complementing protein 20121230 -9606 7508 XPC - RAD4|XP3|XPCC HGNC:12816|MIM:613208|Ensembl:ENSG00000154767|HPRD:02046|Vega:OTTHUMG00000155526 3 3p25 xeroderma pigmentosum, complementation group C protein-coding XPC xeroderma pigmentosum, complementation group C O DNA repair protein complementing XP-C cells|mutant xeroderma pigmentosum group C|p125 20121230 -9606 7511 XPNPEP1 RP11-451M19.1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 HGNC:12822|MIM:602443|Ensembl:ENSG00000108039|HPRD:03899|Vega:OTTHUMG00000019029 10 10q25.3 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble protein-coding XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble O X-Pro aminopeptidase 1|X-prolyl aminopeptidase 1, soluble|aminoacylproline aminopeptidase|aminopeptidase P, cytosolic|cytosolic aminopeptidase P|soluble aminopeptidase P|xaa-Pro aminopeptidase 1 20121230 -9606 7512 XPNPEP2 RP4-753P9.2 APP2 HGNC:12823|MIM:300145|Ensembl:ENSG00000122121|HPRD:02144|Vega:OTTHUMG00000022373 X Xq25 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound protein-coding XPNPEP2 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound O X-Pro aminopeptidase 2|aminoacylproline aminopeptidase|mAmP|membrane-bound APP|membrane-bound AmP|membrane-bound aminopeptidase P|xaa-Pro aminopeptidase 2 20121230 -9606 7514 XPO1 - CRM1|emb|exp1 HGNC:12825|MIM:602559|Ensembl:ENSG00000082898|HPRD:03975|Vega:OTTHUMG00000152316 2 2p15 exportin 1 (CRM1 homolog, yeast) protein-coding XPO1 exportin 1 (CRM1 homolog, yeast) O CRM1, yeast, homolog|chromosome region maintenance 1 protein homolog|exportin 1 (CRM1, yeast, homolog)|exportin-1|exportin-1 (required for chromosome region maintenance) 20121230 -9606 7515 XRCC1 - RCC HGNC:12828|MIM:194360|Ensembl:ENSG00000073050|HPRD:01909 19 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 protein-coding XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1 O DNA repair protein XRCC1|X-ray repair cross-complementing protein 1|X-ray-repair, complementing defective, repair in Chinese hamster 20121230 -9606 7516 XRCC2 - - HGNC:12829|MIM:600375|Ensembl:ENSG00000196584|HPRD:02656|Vega:OTTHUMG00000151470 7 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 protein-coding XRCC2 X-ray repair complementing defective repair in Chinese hamster cells 2 O DNA repair protein XRCC2|X-ray repair cross-complementing protein 2|X-ray repair, complementing defective, repair in Chinese hamster 20121230 -9606 7517 XRCC3 - CMM6 HGNC:12830|MIM:600675|Ensembl:ENSG00000126215|HPRD:07201|Vega:OTTHUMG00000169228 14 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 protein-coding XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3 O DNA repair protein XRCC3|X-ray repair cross-complementing protein 3 20121230 -9606 7518 XRCC4 - - HGNC:12831|MIM:194363|Ensembl:ENSG00000152422|HPRD:15951|Vega:OTTHUMG00000131319 5 5q14.2 X-ray repair complementing defective repair in Chinese hamster cells 4 protein-coding XRCC4 X-ray repair complementing defective repair in Chinese hamster cells 4 O DNA repair protein XRCC4|X-ray repair cross-complementing protein 4|X-ray repair, complementing defective, repair in Chinese hamster 20121230 -9606 7520 XRCC5 - KARP-1|KARP1|KU80|KUB2|Ku86|NFIV HGNC:12833|MIM:194364|Ensembl:ENSG00000079246|HPRD:08935|Vega:OTTHUMG00000133059 2 2q35 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) protein-coding XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) O 86 kDa subunit of Ku antigen|ATP-dependent DNA helicase 2 subunit 2|ATP-dependent DNA helicase II 80 kDa subunit|CTC box-binding factor 85 kDa subunit|CTC85|CTCBF|DNA repair protein XRCC5|Ku autoantigen, 80kDa|Ku86 autoantigen related protein 1|TLAA|X-ray repair cross-complementing protein 5|lupus Ku autoantigen protein p86|nuclear factor IV|thyroid-lupus autoantigen 20121230 -9606 7521 XRCC8 - - HGNC:12834 - - X-ray repair complementing defective repair in Chinese hamster cells 8 protein-coding XRCC8 X-ray repair complementing defective repair in Chinese hamster cells 8 O - 20080828 -9606 7523 XS - LUXS HGNC:12837|MIM:309050 X Xp21.2-q21.1 X-linked suppressor of LU antigens unknown XS X-linked suppressor of LU antigens O - 20110814 -9606 7524 XWNPEP - - HGNC:12838 - - X-tryptophanyl aminopeptidase protein-coding XWNPEP X-tryptophanyl aminopeptidase O X-tryptophanyl aminopeptidase (aminopeptidase W)|aminopeptidase W 20120713 -9606 7525 YES1 - HsT441|P61-YES|Yes|c-yes HGNC:12841|MIM:164880|Ensembl:ENSG00000176105|HPRD:01285|Vega:OTTHUMG00000131472 18 18p11.31-p11.21 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 protein-coding YES1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 O Yamaguchi sarcoma oncogene|cellular yes-1 protein|proto-oncogene c-Yes|proto-oncogene tyrosine-protein kinase YES|tyrosine-protein kinase Yes 20121230 -9606 7526 YESP - D22S670|SYR|YES2 HGNC:12842 22 22q12.1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog pseudogene pseudo YESP v-yes-1 Yamaguchi sarcoma viral oncogene homolog pseudogene O - 20121230 -9606 7528 YY1 - DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 HGNC:12856|MIM:600013|Ensembl:ENSG00000100811|HPRD:02482|Vega:OTTHUMG00000150479 14 14q YY1 transcription factor protein-coding YY1 YY1 transcription factor O INO80 complex subunit S|YY-1|Yin and Yang 1 protein|delta transcription factor|transcriptional repressor protein YY1 20121230 -9606 7529 YWHAB RP1-148E22.1 GW128|HS1|KCIP-1|YWHAA HGNC:12849|MIM:601289|Ensembl:ENSG00000166913|HPRD:03184|Vega:OTTHUMG00000032549 20 20q13.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide protein-coding YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide O 14-3-3 alpha|14-3-3 protein beta/alpha|brain protein 14-3-3, beta isoform|protein 1054|protein kinase C inhibitor protein 1|protein kinase C inhibitor protein-1|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, alpha polypeptide 20121230 -9606 7531 YWHAE - 14-3-3E|KCIP-1|MDCR|MDS HGNC:12851|MIM:605066|Ensembl:ENSG00000108953|HPRD:05457|Vega:OTTHUMG00000134316 17 17p13.3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide protein-coding YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide O 14-3-3 epsilon|14-3-3 protein epsilon|mitochondrial import stimulation factor L subunit|protein kinase C inhibitor protein-1|tyrosine 3/tryptophan 5 -monooxygenase activation protein, epsilon polypeptide 20121230 -9606 7532 YWHAG - 14-3-3GAMMA HGNC:12852|MIM:605356|Ensembl:ENSG00000170027|HPRD:05639|Vega:OTTHUMG00000022862 7 7q11.23 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide protein-coding YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide O 14-3-3 gamma|14-3-3 protein gamma|KCIP-1|protein kinase C inhibitor protein 1 20121230 -9606 7533 YWHAH LL22NC03-44A4.1 YWHA1 HGNC:12853|MIM:113508|Ensembl:ENSG00000128245|HPRD:00215|Vega:OTTHUMG00000030833 22 22q12.3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide protein-coding YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide O 14-3-3 eta|14-3-3 protein eta 20121230 -9606 7534 YWHAZ - 14-3-3-zeta|KCIP-1|YWHAD HGNC:12855|MIM:601288|Ensembl:ENSG00000164924|HPRD:03183|Vega:OTTHUMG00000134291 8 8q23.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide protein-coding YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide O 14-3-3 delta|14-3-3 protein zeta/delta|14-3-3 protein/cytosolic phospholipase A2|14-3-3 zeta|phospholipase A2|protein kinase C inhibitor protein 1|protein kinase C inhibitor protein-1|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, delta polypeptide|tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide 20121230 -9606 7535 ZAP70 - SRK|STCD|STD|TZK|ZAP-70 HGNC:12858|MIM:176947|Ensembl:ENSG00000115085|HPRD:01495|Vega:OTTHUMG00000153060 2 2q12 zeta-chain (TCR) associated protein kinase 70kDa protein-coding ZAP70 zeta-chain (TCR) associated protein kinase 70kDa O 70 kDa zeta-associated protein|70 kDa zeta-chain associated protein|syk-related tyrosine kinase|tyrosine-protein kinase ZAP-70|zeta-chain associated protein kinase, 70kD 20121230 -9606 7536 SF1 - BBP|D11S636|MBBP|ZFM1|ZNF162 HGNC:12950|MIM:601516|Ensembl:ENSG00000168066|HPRD:03306|Vega:OTTHUMG00000066833 11 11q13 splicing factor 1 protein-coding SF1 splicing factor 1 O mammalian branch point-binding protein|transcription factor ZFM1|zinc finger gene in MEN1 locus|zinc finger protein 162 20121230 -9606 7538 ZFP36 - G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36 HGNC:12862|MIM:190700|Ensembl:ENSG00000128016|HPRD:01835 19 19q13.1 ZFP36 ring finger protein protein-coding ZFP36 ZFP36 ring finger protein O G0/G1 switch regulatory protein 24|growth factor-inducible nuclear protein NUP475|tristetraprolin|tristetraproline|zinc finger protein 36 homolog|zinc finger protein 36, C3H type, homolog|zinc finger protein, C3H type, 36 homolog 20121230 -9606 7539 ZFP37 - ZNF906 HGNC:12863|MIM:602951|Ensembl:ENSG00000136866|HPRD:04258|Vega:OTTHUMG00000021019 9 9q32 ZFP37 zinc finger protein protein-coding ZFP37 ZFP37 zinc finger protein O Zinc finger protein-37, mouse, homolog of|zfp-37|zinc finger protein 37 homolog|zinc finger protein homologous to Zfp37 in mouse 20121230 -9606 7541 ZFP161 - ZBTB14|ZF5|ZFP-161|ZFP-5|ZNF478 HGNC:12860|MIM:602126|Ensembl:ENSG00000198081|HPRD:03674|Vega:OTTHUMG00000131563 18 18pter-p11.21 ZFP161 zinc finger protein protein-coding ZFP161 ZFP161 zinc finger protein O zinc finger and BTB domain-containing protein 14|zinc finger protein 161 homolog|zinc finger protein 478|zinc finger protein 5 homolog|zinc finger protein homologous to Zfp161 in mouse 20121230 -9606 7542 ZFPL1 - D11S750|MCG4 HGNC:12868|Ensembl:ENSG00000162300|HPRD:15729|Vega:OTTHUMG00000165597 11 11q13 zinc finger protein-like 1 protein-coding ZFPL1 zinc finger protein-like 1 O zinc finger protein MCG4|zinc-finger protein in MEN1 region 20121230 -9606 7543 ZFX - ZNF926 HGNC:12869|MIM:314980|Ensembl:ENSG00000005889|HPRD:02445|Vega:OTTHUMG00000021264 X Xp21.3 zinc finger protein, X-linked protein-coding ZFX zinc finger protein, X-linked O X-linked zinc finger protein|zinc finger X-chromosomal protein 20121230 -9606 7544 ZFY - ZNF911 HGNC:12870|MIM:490000|Ensembl:ENSG00000067646|HPRD:02466|Vega:OTTHUMG00000036159 Y Yp11.3 zinc finger protein, Y-linked protein-coding ZFY zinc finger protein, Y-linked O zinc finger Y-chromosomal protein 20121230 -9606 7545 ZIC1 - ZIC|ZNF201 HGNC:12872|MIM:600470|Ensembl:ENSG00000152977|HPRD:02718|Vega:OTTHUMG00000159456 3 3q24 Zic family member 1 protein-coding ZIC1 Zic family member 1 O Zic family member 1 (odd-paired homolog, Drosophila)|Zinc finger protein of the cerebellum 1|zinc finger protein 201|zinc finger protein ZIC 1 20121230 -9606 7546 ZIC2 - HPE5 HGNC:12873|MIM:603073|Ensembl:ENSG00000043355|HPRD:04353|Vega:OTTHUMG00000017279 13 13q32 Zic family member 2 protein-coding ZIC2 Zic family member 2 O Zic family member 2 (odd-paired homolog, Drosophila)|Zinc finger protein of the cerebellum 2|zinc finger protein ZIC 2 20121230 -9606 7547 ZIC3 RP1-137H15.3 HTX|HTX1|VACTERLX|ZNF203 HGNC:12874|MIM:300265|Ensembl:ENSG00000156925|HPRD:02225|Vega:OTTHUMG00000022525 X Xq26.2 Zic family member 3 protein-coding ZIC3 Zic family member 3 O Zic family member 3 (odd-paired homolog, Drosophila)|heterotaxy 1|zinc finger protein 203|zinc finger protein ZIC 3|zinc finger protein of the cerebellum 3 20121230 -9606 7549 ZNF2 - A1-5|ZNF661|Zfp661 HGNC:12991|MIM:194500|Ensembl:ENSG00000163067|HPRD:11834|Vega:OTTHUMG00000155150 2 2q11.2 zinc finger protein 2 protein-coding ZNF2 zinc finger protein 2 O zinc finger protein 2.2|zinc finger protein 661 20121230 -9606 7551 ZNF3 - A8-51|HF.12|KOX25|PP838|Zfp113 HGNC:13089|MIM:194510|Ensembl:ENSG00000166526|HPRD:01911|Vega:OTTHUMG00000154596 7 7q22.1 zinc finger protein 3 protein-coding ZNF3 zinc finger protein 3 O C2-H2 type zinc finger protein|HZF3.1|zinc finger protein HF.12|zinc finger protein HZF3.1|zinc finger protein KOX25 20121230 -9606 7552 ZNF711 - CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1 HGNC:13128|MIM:314990|Ensembl:ENSG00000147180|HPRD:02446|Vega:OTTHUMG00000021933 X Xq21.1 zinc finger protein 711 protein-coding ZNF711 zinc finger protein 711 O dJ75N13.1 (znf6-like)|zinc finger protein 6 (CMPX1) 20121230 -9606 7553 ZNF7 - HF.16|KOX4|zf30 HGNC:13139|MIM:194531|Ensembl:ENSG00000147789|HPRD:01918|Vega:OTTHUMG00000165200 8 8q24 zinc finger protein 7 protein-coding ZNF7 zinc finger protein 7 O C2-H2 type zinc finger protein|Zinc finger protein-7 (KOX4)|zinc finger protein 7 (KOX 4, clone HF.16)|zinc finger protein HF.16|zinc finger protein KOX4|zinc finger protein zfp30 20121230 -9606 7554 ZNF8 - HF.18|Zfp128 HGNC:13154|MIM:194532|Ensembl:ENSG00000083842|HPRD:01919|Vega:OTTHUMG00000182073 19 19q13.43 zinc finger protein 8 protein-coding ZNF8 zinc finger protein 8 O zinc finger protein 272|zinc finger protein 8 (clone HF.18)|zinc finger protein HF.18 20121230 -9606 7555 CNBP - CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 HGNC:13164|MIM:116955|Ensembl:ENSG00000169714|HPRD:00311|Vega:OTTHUMG00000159943 3 3q21 CCHC-type zinc finger, nucleic acid binding protein protein-coding CNBP CCHC-type zinc finger, nucleic acid binding protein O cellular nucleic acid binding protein|cellular nucleic acid-binding protein|erythroid differentiation-related|sterol regulatory element-binding protein|zinc finger protein 273|zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) 20121230 -9606 7556 ZNF10 - KOX1 HGNC:12879|MIM:194538|Ensembl:ENSG00000256223|HPRD:01923|Vega:OTTHUMG00000167944 12 12q24.33 zinc finger protein 10 protein-coding ZNF10 zinc finger protein 10 O zinc finger protein 10 (KOX 1)|zinc finger protein KOX1 20121230 -9606 7559 ZNF12 - GIOT-3|HZF11|KOX3|ZNF325 HGNC:12902|MIM:194536|Ensembl:ENSG00000164631|HPRD:11835|HPRD:15773|Vega:OTTHUMG00000151910 7 7p22.1 zinc finger protein 12 protein-coding ZNF12 zinc finger protein 12 O gonadotropin inducible transcription repressor 3|gonadotropin-inducible ovary transcription repressor 3|zinc finger protein 11|zinc finger protein 325|zinc finger protein KOX3 20121230 -9606 7561 ZNF14 - GIOT-4|KOX6 HGNC:12924|MIM:194556|Ensembl:ENSG00000105708|HPRD:01933|Vega:OTTHUMG00000182362 19 19p13.11 zinc finger protein 14 protein-coding ZNF14 zinc finger protein 14 O gonadotropin inducible transcription repressor-4|gonadotropin-inducible ovary transcription repressor 4|zinc finger protein 14 (KOX 6)|zinc finger protein KOX6 20121230 -9606 7562 ZNF708 - KOX8|ZNF15|ZNF15L1 HGNC:12945|Ensembl:ENSG00000182141|HPRD:18322 19 19p12 zinc finger protein 708 protein-coding ZNF708 zinc finger protein 708 O zinc finger protein 15|zinc finger protein 15-like 1 (KOX 8)|zinc finger protein KOX8 20121230 -9606 7564 ZNF16 - HZF1|KOX9 HGNC:12947|MIM:601262|Ensembl:ENSG00000170631|HPRD:03163|Vega:OTTHUMG00000165253 8 8q24 zinc finger protein 16 protein-coding ZNF16 zinc finger protein 16 O zinc finger protein KOX9|zinc finger protein Kruppel type 9 20121230 -9606 7565 ZNF17 - HPF3|KOX10 HGNC:12958|Ensembl:ENSG00000186272|HPRD:18323 19 19q13.4 zinc finger protein 17 protein-coding ZNF17 zinc finger protein 17 O zinc finger protein 17 (HPF3, KOX 10)|zinc finger protein HPF3|zinc finger protein KOX10 20121230 -9606 7566 ZNF18 - HDSG1|KOX11|ZKSCAN6|ZNF535|Zfp535 HGNC:12969|MIM:194524|Ensembl:ENSG00000154957|HPRD:01913|Vega:OTTHUMG00000178307 17 17p11.2 zinc finger protein 18 protein-coding ZNF18 zinc finger protein 18 O heart development-specific gene 1 protein|heart development-specific protein|zinc finger protein 18 (KOX 11)|zinc finger protein 535|zinc finger protein KOX11|zinc finger protein with KRAB and SCAN domains 6 20121230 -9606 7567 ZNF19 - KOX12 HGNC:12981|MIM:194525|Ensembl:ENSG00000157429|HPRD:01914|Vega:OTTHUMG00000137593 16 16q22 zinc finger protein 19 protein-coding ZNF19 zinc finger protein 19 O zinc finger protein 19 (KOX 12)|zinc finger protein KOX12 20121230 -9606 7568 ZNF20 - KOX13 HGNC:12992|MIM:194557|Ensembl:ENSG00000132010|Vega:OTTHUMG00000156409 19 19p13.2 zinc finger protein 20 protein-coding ZNF20 zinc finger protein 20 O zinc finger protein KOX13 20121230 -9606 7569 ZNF182 RP1-54B20.4 HHZ150|KOX14|ZNF21|Zfp182 HGNC:13001|MIM:314993|Ensembl:ENSG00000147118|HPRD:11781|Vega:OTTHUMG00000021460 X Xp11.23 zinc finger protein 182 protein-coding ZNF182 zinc finger protein 182 O zinc finger protein 21 (KOX 14)|zinc finger protein KOX14 20121230 -9606 7570 ZNF22 RP11-285G1.13-001 HKR-T1|KOX15|ZNF422|Zfp422 HGNC:13012|MIM:194529|Ensembl:ENSG00000165512|HPRD:01917|Vega:OTTHUMG00000018064 10 10q11 zinc finger protein 22 protein-coding ZNF22 zinc finger protein 22 O krox-26 protein|zinc finger protein 22 (KOX 15)|zinc finger protein KOX15|zinc finger protein Krox-26 20121230 -9606 7571 ZNF23 - KOX16|ZNF359|ZNF612|Zfp612 HGNC:13023|MIM:194527|Ensembl:ENSG00000167377|HPRD:01915|Vega:OTTHUMG00000176797 16 16q22 zinc finger protein 23 protein-coding ZNF23 zinc finger protein 23 O kruppel-like zinc finger factor X31|zinc finger protein 23 (KOX 16)|zinc finger protein 32|zinc finger protein 359|zinc finger protein 612|zinc finger protein KOX16 20121230 -9606 7572 ZNF24 - KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 HGNC:13032|MIM:194534|Ensembl:ENSG00000172466|HPRD:01921|Vega:OTTHUMG00000132565 18 18q12 zinc finger protein 24 protein-coding ZNF24 zinc finger protein 24 O lacks zinc finger domain|retinoic acid suppression protein A|zinc finger and SCAN domain-containing protein 3|zinc finger protein 191|zinc finger protein 24 (KOX 17)|zinc finger protein KOX17 20121230 -9606 7574 ZNF26 - KOX20 HGNC:13053|MIM:194537|Ensembl:ENSG00000198393|HPRD:01922|Vega:OTTHUMG00000167936 12 12q24.33 zinc finger protein 26 protein-coding ZNF26 zinc finger protein 26 O zinc finger protein KOX20 20121230 -9606 7576 ZNF28 - KOX24 HGNC:13073|Ensembl:ENSG00000198538|HPRD:18507|Vega:OTTHUMG00000154564 19 19q13.41 zinc finger protein 28 protein-coding ZNF28 zinc finger protein 28 O zinc finger protein KOX24 20121230 -9606 7577 ZNF29P - KOX26|ZNF29 HGNC:13080|MIM:194535 17 17p12 zinc finger protein 29, pseudogene pseudo ZNF29P zinc finger protein 29, pseudogene O - 20121230 -9606 7579 ZSCAN20 RP4-580O19.1 KOX29|ZFP-31|ZNF31|ZNF360 HGNC:13093|MIM:611315|Ensembl:ENSG00000121903|HPRD:15769|Vega:OTTHUMG00000004173 1 1p34.3 zinc finger and SCAN domain containing 20 protein-coding ZSCAN20 zinc finger and SCAN domain containing 20 O zinc finger and SCAN domain-containing protein 20|zinc finger protein 31|zinc finger protein 360|zinc finger protein KOX29 20121230 -9606 7580 ZNF32 - KOX30 HGNC:13095|MIM:194539|Ensembl:ENSG00000169740|HPRD:01924|Vega:OTTHUMG00000018043 10 10q22-q25 zinc finger protein 32 protein-coding ZNF32 zinc finger protein 32 O C2H2-546|zinc finger protein 32 (KOX 30)|zinc finger protein KOX30 20121230 -9606 7581 ZNF33A - KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK HGNC:13096|MIM:194521|Ensembl:ENSG00000189180|HPRD:11710|Vega:OTTHUMG00000017983 10 10p11.2 zinc finger protein 33A protein-coding ZNF33A zinc finger protein 33A O brain my041 protein|zinc finger and ZAK-associated protein with KRAB domain|zinc finger protein 11A|zinc finger protein 33a (KOX 31)|zinc finger protein KOX31 20121230 -9606 7582 ZNF33B - KOX2|KOX31|ZNF11B HGNC:13097|MIM:194522|Ensembl:ENSG00000196693|HPRD:01912|Vega:OTTHUMG00000018014 10 10q11.2 zinc finger protein 33B protein-coding ZNF33B zinc finger protein 33B O zinc finger protein 11b (KOX 2)|zinc finger protein 33b (KOX 31)|zinc finger protein KOX2 20121230 -9606 7584 ZNF35 - HF.10|HF10|Zfp105 HGNC:13099|MIM:194533|Ensembl:ENSG00000169981|HPRD:01920|Vega:OTTHUMG00000133091 3 3p21.32 zinc finger protein 35 protein-coding ZNF35 zinc finger protein 35 O zinc finger protein 35 (clone HF.10)|zinc finger protein HF.10 20121230 -9606 7586 ZKSCAN1 - 9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36 HGNC:13101|MIM:601260|Ensembl:ENSG00000106261|HPRD:03161|Vega:OTTHUMG00000156534 7 7q22 zinc finger with KRAB and SCAN domains 1 protein-coding ZKSCAN1 zinc finger with KRAB and SCAN domains 1 O zinc finger protein 139|zinc finger protein 36 (KOX 18)|zinc finger protein KOX18|zinc finger protein with KRAB and SCAN domains 1 20121230 -9606 7587 ZNF37A - KOX21|ZNF37 HGNC:13102|Ensembl:ENSG00000075407|HPRD:18508|Vega:OTTHUMG00000017990 10 10p11.2 zinc finger protein 37A protein-coding ZNF37A zinc finger protein 37A O zinc finger protein 37a (KOX 21)|zinc finger protein KOX21 20121230 -9606 7589 ZSCAN21 - NY-REN-21|ZNF38|Zipro1 HGNC:13104|MIM:601261|Ensembl:ENSG00000166529|HPRD:03162|Vega:OTTHUMG00000154583 7 7q22.1 zinc finger and SCAN domain containing 21 protein-coding ZSCAN21 zinc finger and SCAN domain containing 21 O renal carcinoma antigen NY-REN-21|zfp-38|zinc finger and SCAN domain-containing protein 21|zinc finger protein 38 (KOX 25)|zinc finger protein 38 homolog|zinc finger protein NY-REN-21 antigen 20121230 -9606 7592 ZNF41 RP13-479F17.4 MRX89 HGNC:13107|MIM:314995|Ensembl:ENSG00000147124|HPRD:02447|Vega:OTTHUMG00000021448 X Xp11.23 zinc finger protein 41 protein-coding ZNF41 zinc finger protein 41 O - 20121230 -9606 7593 MZF1 - MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6 HGNC:13108|MIM:194550|Ensembl:ENSG00000099326|HPRD:01930 19 19q13.4 myeloid zinc finger 1 protein-coding MZF1 myeloid zinc finger 1 O zinc finger and SCAN domain-containing protein 6|zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 20121230 -9606 7594 ZNF43 - HTF6|KOX27|ZNF39L1 HGNC:13109|MIM:603972|Ensembl:ENSG00000198521|HPRD:04917|Vega:OTTHUMG00000128543 19 19p13.1-p12 zinc finger protein 43 protein-coding ZNF43 zinc finger protein 43 O zinc finger protein 39-like 1 (KOX 27)|zinc finger protein HTF6|zinc finger protein KOX27 20121230 -9606 7596 ZNF45 - KOX5|ZNF13 HGNC:13111|MIM:194554|Ensembl:ENSG00000124459|HPRD:03469|Vega:OTTHUMG00000182189 19 19q13.2 zinc finger protein 45 protein-coding ZNF45 zinc finger protein 45 O BRC1744|zinc finger protein 13|zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide)|zinc finger protein KOX5 20121230 -9606 7597 ZBTB25 - C14orf51|KUP|ZNF46 HGNC:13112|MIM:194541|Ensembl:ENSG00000089775|HPRD:01926|Vega:OTTHUMG00000141310 14 14q23-q24 zinc finger and BTB domain containing 25 protein-coding ZBTB25 zinc finger and BTB domain containing 25 O zinc finger and BTB domain-containing protein 25|zinc finger protein 46|zinc finger protein KUP 20121230 -9606 7608 ZNF56 - ZNF742 HGNC:13124 19 19p13.1 zinc finger protein 56 pseudo ZNF56 zinc finger protein 56 O - 20121230 -9606 7617 ZNF66P - ZNF66 HGNC:13135|HPRD:15890 19 19p12 zinc finger protein 66, pseudogene pseudo ZNF66P zinc finger protein 66, pseudogene O - 20121230 -9606 7618 ZNF726P1 - ZNF67|ZNF67P HGNC:13136 19 19p13.1 zinc finger protein 726 pseudogene 1 pseudo ZNF726P1 zinc finger protein 726 pseudogene 1 O - 20121230 -9606 7620 ZNF69 - Cos5 HGNC:13138|MIM:194543|Ensembl:ENSG00000198429|HPRD:11836|Vega:OTTHUMG00000156526 19 19p13.2 zinc finger protein 69 protein-coding ZNF69 zinc finger protein 69 O hZNF3 20121230 -9606 7621 ZNF70 - Cos17 HGNC:13140|MIM:194544|Ensembl:ENSG00000187792|HPRD:11837|Vega:OTTHUMG00000150739 22 22q11.23 zinc finger protein 70 protein-coding ZNF70 zinc finger protein 70 O zinc finger protein N27C7-1 20121230 -9606 7624 ZNF73 - Cos12|ZNF186|hZNF2 HGNC:13143|MIM:194547 22 22p zinc finger protein 73 protein-coding ZNF73 zinc finger protein 73 O zinc finger protein 186 20121211 -9606 7625 ZNF74 - COS52|ZFP520|ZNF520|hZNF7 HGNC:13144|MIM:194548|Ensembl:ENSG00000185252|HPRD:01928|Vega:OTTHUMG00000150687 22 22q11.21 zinc finger protein 74 protein-coding ZNF74 zinc finger protein 74 O zinc finger protein 520 20121230 -9606 7626 ZNF75D RP13-210D15.7 D8C6|ZNF75|ZNF82 HGNC:13145|MIM:314997|Ensembl:ENSG00000186376|HPRD:02448|Vega:OTTHUMG00000022482 X Xq26.3 zinc finger protein 75D protein-coding ZNF75D zinc finger protein 75D O zinc finger protein 75|zinc finger protein 82 20121230 -9606 7627 ZNF75A - - HGNC:13146|MIM:601473|Ensembl:ENSG00000162086|HPRD:03278|Vega:OTTHUMG00000129356 16 16p13.3 zinc finger protein 75a protein-coding ZNF75A zinc finger protein 75a O zinc finger protein 75A 20121230 -9606 7628 ZNF75BP - ZNF75B HGNC:13147 12 12q13 zinc finger protein 75B, pseudogene pseudo ZNF75BP zinc finger protein 75B, pseudogene O - 20121230 -9606 7629 ZNF76 RP3-329A5.7 D6S229E|ZNF523|Zfp523 HGNC:13149|MIM:194549|Ensembl:ENSG00000065029|HPRD:01929|Vega:OTTHUMG00000014564 6 6p21.31 zinc finger protein 76 protein-coding ZNF76 zinc finger protein 76 O zinc finger protein 523|zinc finger protein 76 (expressed in testis) 20121230 -9606 7633 ZNF79 - pT7 HGNC:13153|MIM:194552|Ensembl:ENSG00000196152|HPRD:01931|HPRD:01934|Vega:OTTHUMG00000020703 9 9q34 zinc finger protein 79 protein-coding ZNF79 zinc finger protein 79 O ZNFpT7 20121230 -9606 7634 ZNF80 - pT17 HGNC:13155|MIM:194553|Ensembl:ENSG00000174255|HPRD:01932|Vega:OTTHUMG00000159332 3 3q13.3 zinc finger protein 80 protein-coding ZNF80 zinc finger protein 80 O ZNFPT17 20121230 -9606 7637 ZNF84 - HPF2 HGNC:13159|Ensembl:ENSG00000198040|HPRD:15891|Vega:OTTHUMG00000167939 12 12q24.33 zinc finger protein 84 protein-coding ZNF84 zinc finger protein 84 O zinc finger protein HPF2 20121230 -9606 7638 ZNF221 - - HGNC:13014|Ensembl:ENSG00000159905|HPRD:10323|Vega:OTTHUMG00000182214 19 19q13.2 zinc finger protein 221 protein-coding ZNF221 zinc finger protein 221 O - 20121230 -9606 7639 ZNF85 - HPF4|HTF1 HGNC:13160|MIM:603899|Ensembl:ENSG00000105750|HPRD:04875 19 19p12 zinc finger protein 85 protein-coding ZNF85 zinc finger protein 85 O zinc finger protein 85 (HPF4, HTF1) 20121230 -9606 7643 ZNF90 hCG_2040651 HTF9 HGNC:13165|MIM:603973|Ensembl:ENSG00000213988|Vega:OTTHUMG00000158057 19 19p12 zinc finger protein 90 protein-coding ZNF90 zinc finger protein 90 O zinc finger protein HTF9 20121230 -9606 7644 ZNF91 - HPF7|HTF10 HGNC:13166|MIM:603971|Ensembl:ENSG00000167232|HPRD:04916 19 19p12 zinc finger protein 91 protein-coding ZNF91 zinc finger protein 91 O zinc finger protein 91 (HPF7, HTF10)|zinc finger protein HPF7|zinc finger protein HTF10 20121230 -9606 7652 ZNF99 - C19orf9|F8281 HGNC:13175|MIM:603981 19 19p12 zinc finger protein 99 protein-coding ZNF99 zinc finger protein 99 O zinc finger protein ENSP00000375192 20121230 -9606 7661 ZNF90P1 - ZNF108|ZNF108P HGNC:12888 3 3q13 zinc finger protein 90 pseudogene 1 pseudo ZNF90P1 zinc finger protein 90 pseudogene 1 O - 20121230 -9606 7673 ZNF222 - - HGNC:13015|Ensembl:ENSG00000159885|HPRD:15748|Vega:OTTHUMG00000182309 19 19q13.2 zinc finger protein 222 protein-coding ZNF222 zinc finger protein 222 O - 20121230 -9606 7675 ZNF121 - D19S204|ZHC32|ZNF20 HGNC:12904|MIM:194628|Ensembl:ENSG00000197961|HPRD:15952|Vega:OTTHUMG00000180134 19 19p zinc finger protein 121 protein-coding ZNF121 zinc finger protein 121 O zinc finger protein 121 (clone ZHC32)|zinc finger protein 20 20121230 -9606 7678 ZNF124 RP11-488L18.2 HZF-16|HZF16|ZK7 HGNC:12907|MIM:194631|Ensembl:ENSG00000196418|HPRD:01936|Vega:OTTHUMG00000041112 1 1q44 zinc finger protein 124 protein-coding ZNF124 zinc finger protein 124 O zinc finger protein HZF-16 20121230 -9606 7681 MKRN3 - D15S9|RNF63|ZFP127|ZNF127 HGNC:7114|MIM:603856|Ensembl:ENSG00000179455|HPRD:04836|Vega:OTTHUMG00000129160 15 15q11-q13 makorin ring finger protein 3 protein-coding MKRN3 makorin ring finger protein 3 O RING finger protein 63|probable E3 ubiquitin-protein ligase makorin-3|zinc finger protein 127 20121230 -9606 7682 MKRN4P - MKRN4|MKRNP5|RNF64|ZNF-Xp|ZNF127-Xp|ZNF127L1 HGNC:7115|HPRD:06661 X Xp21.1 makorin ring finger protein 4, pseudogene pseudo MKRN4P makorin ring finger protein 4, pseudogene O - 20121230 -9606 7683 MKRN5P - MKRNP1|ZNF-Xq|ZNF127L2 HGNC:7117 X Xq13 makorin ring finger protein 5, pseudogene pseudo MKRN5P makorin ring finger protein 5, pseudogene O - 20121230 -9606 7686 MKRN7P - MKRNP3|ZNF127L5|dJ981L23.2 HGNC:7119 20 20q13.12 makorin ring finger protein 7, pseudogene pseudo MKRN7P makorin ring finger protein 7, pseudogene O - 20121230 -9606 7690 ZNF131 - pHZ-10 HGNC:12915|MIM:604073|Ensembl:ENSG00000172262|Vega:OTTHUMG00000162223 5 5p12 zinc finger protein 131 protein-coding ZNF131 zinc finger protein 131 O zinc finger protein 131 (clone pHZ-10) 20121230 -9606 7691 ZNF132 - pHZ-12 HGNC:12916|MIM:604074|Ensembl:ENSG00000131849|HPRD:07240 19 19q13.4 zinc finger protein 132 protein-coding ZNF132 zinc finger protein 132 O - 20121230 -9606 7692 ZNF133 RP4-568F9.5 ZNF150|pHZ-13|pHZ-66 HGNC:12917|MIM:604075|Ensembl:ENSG00000125846|HPRD:04964|Vega:OTTHUMG00000031965 20 20p11.23 zinc finger protein 133 protein-coding ZNF133 zinc finger protein 133 O zinc finger protein 133 (clone pHZ-13)|zinc finger protein 150 (pHZ-66) 20121230 -9606 7693 ZNF134 - pHZ-15 HGNC:12918|MIM:604076|Ensembl:ENSG00000213762|HPRD:07241 19 19q13.4 zinc finger protein 134 protein-coding ZNF134 zinc finger protein 134 O zinc finger protein 134 (clone pHZ-15) 20121230 -9606 7694 ZNF135 - ZNF61|ZNF78L1|pHZ-17|pT3 HGNC:12919|MIM:604077|Ensembl:ENSG00000176293|HPRD:07242|Vega:OTTHUMG00000160719 19 19q13.4 zinc finger protein 135 protein-coding ZNF135 zinc finger protein 135 O zinc finger protein 135 (clone pHZ-17)|zinc finger protein 61|zinc finger protein 78-like 1 (pT3) 20121230 -9606 7695 ZNF136 - pHZ-20 HGNC:12920|MIM:604078|Ensembl:ENSG00000196646|HPRD:04965|Vega:OTTHUMG00000156429 19 19p13.2 zinc finger protein 136 protein-coding ZNF136 zinc finger protein 136 O - 20121230 -9606 7696 ZNF137P - ZNF137|pHZ-30 HGNC:12921|MIM:604079|HPRD:07243 19 19q13.4 zinc finger protein 137, pseudogene pseudo ZNF137P zinc finger protein 137, pseudogene O - 20121230 -9606 7697 ZNF138 - pHZ-32 HGNC:12922|MIM:604080|Ensembl:ENSG00000197008|HPRD:07244|Vega:OTTHUMG00000156603 7 7q11.21 zinc finger protein 138 protein-coding ZNF138 zinc finger protein 138 O zinc finger protein 138 (clone pHZ-32) 20121230 -9606 7699 ZNF140 - pHZ-39 HGNC:12925|MIM:604082|Ensembl:ENSG00000196387|HPRD:04966|Vega:OTTHUMG00000167942 12 12q24.33 zinc finger protein 140 protein-coding ZNF140 zinc finger protein 140 O - 20121230 -9606 7700 ZNF141 - D4S90|pHZ-44 HGNC:12926|MIM:194648|Ensembl:ENSG00000131127|HPRD:01937|Vega:OTTHUMG00000159852 4 4p16.3 zinc finger protein 141 protein-coding ZNF141 zinc finger protein 141 O zinc finger protein 141 (clone pHZ-44) 20121230 -9606 7701 ZNF142 - pHZ-49 HGNC:12927|MIM:604083|Ensembl:ENSG00000115568|HPRD:04967|Vega:OTTHUMG00000154736 2 2q35 zinc finger protein 142 protein-coding ZNF142 zinc finger protein 142 O HA4654|zinc finger protein 142 (clone pHZ-49) 20121230 -9606 7702 ZNF143 - SBF|STAF|pHZ-1 HGNC:12928|MIM:603433|Ensembl:ENSG00000166478|HPRD:04578|Vega:OTTHUMG00000149922 11 11p15.4 zinc finger protein 143 protein-coding ZNF143 zinc finger protein 143 O SPH-binding factor|hStaf|selenocysteine tRNA gene transcription-activating factor|transcriptional activator Staf 20121230 -9606 7703 PCGF2 - MEL-18|RNF110|ZNF144 HGNC:12929|MIM:600346|Ensembl:ENSG00000056661|HPRD:10621|Vega:OTTHUMG00000178505 17 17q12 polycomb group ring finger 2 protein-coding PCGF2 polycomb group ring finger 2 O DNA-binding protein Mel-18|polycomb group RING finger protein 2|ring finger protein 110|zinc finger protein 144 20121230 -9606 7704 ZBTB16 - PLZF|ZNF145 HGNC:12930|MIM:176797|Ensembl:ENSG00000109906|HPRD:11762|Vega:OTTHUMG00000168243 11 11q23.1 zinc finger and BTB domain containing 16 protein-coding ZBTB16 zinc finger and BTB domain containing 16 O zinc finger and BTB domain-containing protein 16|zinc finger protein 145 (Kruppel-like, expressed in promyelocytic leukemia)|zinc finger protein PLZF 20121230 -9606 7705 ZNF146 - OZF HGNC:12931|MIM:601505|Ensembl:ENSG00000167635|HPRD:03296|Vega:OTTHUMG00000180511 19 19q13.1 zinc finger protein 146 protein-coding ZNF146 zinc finger protein 146 O only zinc finger protein|zinc finger protein OZF 20121230 -9606 7706 TRIM25 - EFP|RNF147|Z147|ZNF147 HGNC:12932|MIM:600453|Ensembl:ENSG00000121060|HPRD:02711|Vega:OTTHUMG00000178124 17 17q23.2 tripartite motif containing 25 protein-coding TRIM25 tripartite motif containing 25 O E3 ubiquitin/ISG15 ligase TRIM25|RING finger protein 147|estrogen-responsive finger protein|tripartite motif protein TRIM25|tripartite motif-containing 25|tripartite motif-containing protein 25|ubiquitin/ISG15-conjugating enzyme TRIM25|zinc finger protein 147 (estrogen-responsive finger protein)|zinc finger protein-147 20121230 -9606 7707 ZNF148 - BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 HGNC:12933|MIM:601897|Ensembl:ENSG00000163848|HPRD:03540|Vega:OTTHUMG00000159448 3 3q21 zinc finger protein 148 protein-coding ZNF148 zinc finger protein 148 O CACCC box-binding protein|CLL-associated antigen KW-10|transcription factor ZBP-89|zinc finger DNA-binding protein 89 20121230 -9606 7709 ZBTB17 RP1-134O19.2 MIZ-1|ZNF151|ZNF60|pHZ-67 HGNC:12936|MIM:604084|Ensembl:ENSG00000116809|HPRD:04968|Vega:OTTHUMG00000009377 1 1p36.13 zinc finger and BTB domain containing 17 protein-coding ZBTB17 zinc finger and BTB domain containing 17 O Myc-interacting Zn finger protein-1|myc-interacting zinc finger protein 1|zinc finger and BTB domain-containing protein 17|zinc finger protein 151 (pHZ-67)|zinc finger protein 60 20121230 -9606 7710 ZNF154 - pHZ-92 HGNC:12939|MIM:604085|Ensembl:ENSG00000179909|HPRD:07245 19 19q13.4 zinc finger protein 154 protein-coding ZNF154 zinc finger protein 154 O - 20121230 -9606 7711 ZNF155 - pHZ-96 HGNC:12940|MIM:604086|Ensembl:ENSG00000204920|HPRD:04969|Vega:OTTHUMG00000182215 19 19q13.2-q13.32 zinc finger protein 155 protein-coding ZNF155 zinc finger protein 155 O KRAB A domain 20121230 -9606 7712 ZNF157 RP13-479F17.3 HZF22 HGNC:12942|MIM:300024|Ensembl:ENSG00000147117|HPRD:02064|Vega:OTTHUMG00000021443 X Xp11.2 zinc finger protein 157 protein-coding ZNF157 zinc finger protein 157 O zinc finger protein 22|zinc finger protein HZF22 20121230 -9606 7716 VEZF1 - DB1|ZNF161 HGNC:12949|MIM:606747|Ensembl:ENSG00000136451|HPRD:08416|Vega:OTTHUMG00000178777 17 17q22 vascular endothelial zinc finger 1 protein-coding VEZF1 vascular endothelial zinc finger 1 O putative transcription factor DB1|zinc finger protein 161 20121230 -9606 7718 ZNF165 - CT53|LD65|ZSCAN7 HGNC:12953|MIM:600834|Ensembl:ENSG00000197279|HPRD:02903|Vega:OTTHUMG00000014505 6 6p21.3 zinc finger protein 165 protein-coding ZNF165 zinc finger protein 165 O cancer/testis antigen 53|zinc finger and SCAN domain-containing protein 7 20121230 -9606 7726 TRIM26 DAAP-200B17.5 AFP|RNF95|ZNF173 HGNC:12962|MIM:600830|Ensembl:ENSG00000234127|HPRD:02901|Vega:OTTHUMG00000031041 6 6p21.3 tripartite motif containing 26 protein-coding TRIM26 tripartite motif containing 26 O RING finger protein 95|acid finger protein|tripartite motif-containing 26|tripartite motif-containing protein 26|widely expressed acid zinc finger protein|zinc finger protein 173 20121230 -9606 7727 ZNF174 - ZSCAN8 HGNC:12963|MIM:603900|Ensembl:ENSG00000103343|HPRD:04876|Vega:OTTHUMG00000129358 16 16p13.3 zinc finger protein 174 protein-coding ZNF174 zinc finger protein 174 O AW-1|zinc finger and SCAN domain-containing protein 8 20121230 -9606 7728 ZNF175 - OTK18 HGNC:12964|MIM:601139|Ensembl:ENSG00000105497|HPRD:03088|Vega:OTTHUMG00000167771 19 19q13.4 zinc finger protein 175 protein-coding ZNF175 zinc finger protein 175 O zinc finger protein OTK18 20121230 -9606 7730 ZNF177 - PIGX HGNC:12966|MIM:601276|Ensembl:ENSG00000188629|HPRD:03175|Vega:OTTHUMG00000179943 19 19p13.2 zinc finger protein 177 protein-coding ZNF177 zinc finger protein 177 O - 20121230 -9606 7732 RNF112 - BFP|ZNF179 HGNC:12968|MIM:601237|Ensembl:ENSG00000128482|HPRD:03140|Vega:OTTHUMG00000059601 17 17p11.2 ring finger protein 112 protein-coding RNF112 ring finger protein 112 O RING finger protein 112|brain finger protein|zinc finger protein 179 20121230 -9606 7733 ZNF180 - HHZ168 HGNC:12970|MIM:606740|Ensembl:ENSG00000167384|HPRD:08414|Vega:OTTHUMG00000180495 19 19q13.2 zinc finger protein 180 protein-coding ZNF180 zinc finger protein 180 O - 20121230 -9606 7737 RNF113A - Cwc24|RNF113|ZNF183 HGNC:12974|Ensembl:ENSG00000125352|HPRD:06760|Vega:OTTHUMG00000022283 X Xq25-q26 ring finger protein 113A protein-coding RNF113A ring finger protein 113A O RING finger protein 113A|zinc finger protein 183 (RING finger, C3HC4 type) 20121230 -9606 7738 ZNF184 - - HGNC:12975|MIM:602277|Ensembl:ENSG00000096654|HPRD:03785|Vega:OTTHUMG00000014478 6 6p21.3 zinc finger protein 184 protein-coding ZNF184 zinc finger protein 184 O zinc finger protein 184 (Kruppel-like) 20121230 -9606 7739 ZNF185 - - HGNC:12976|MIM:300381|Ensembl:ENSG00000147394|HPRD:02306|Vega:OTTHUMG00000024187 X Xq28 zinc finger protein 185 (LIM domain) protein-coding ZNF185 zinc finger protein 185 (LIM domain) O P1-A|zinc finger protein 185 20121230 -9606 7741 ZNF187 - SRE-ZBP|ZSCAN26 HGNC:12978|HPRD:15746 6 6p21.31 zinc finger protein 187 protein-coding ZNF187 zinc finger protein 187 O zinc finger and SCAN domain-containing protein 26 20121230 -9606 7743 ZNF189 RP11-490D19.9 - HGNC:12980|MIM:603132|Ensembl:ENSG00000136870|HPRD:11930|Vega:OTTHUMG00000020383 9 9q22-q31 zinc finger protein 189 protein-coding ZNF189 zinc finger protein 189 O - 20121230 -9606 7745 ZNF192 - LD5-1|ZKSCAN8 HGNC:12983|MIM:602240|Ensembl:ENSG00000198315|HPRD:03760|Vega:OTTHUMG00000014510 6 6p21.3 zinc finger protein 192 protein-coding ZNF192 zinc finger protein 192 O zinc finger protein with KRAB and SCAN domains 8 20121230 -9606 7746 ZNF193 PIG12 PRD51|ZSCAN9 HGNC:12984|MIM:602246|Ensembl:ENSG00000137185|HPRD:03766|Vega:OTTHUMG00000014515 6 6p21.3 zinc finger protein 193 protein-coding ZNF193 zinc finger protein 193 O cell proliferation-inducing gene 12 protein|cell proliferation-inducing protein 12|zinc finger and SCAN domain-containing protein 9 20121230 -9606 7748 ZNF195 - HRF1|ZNFP104 HGNC:12986|MIM:602187|Ensembl:ENSG00000005801|HPRD:03718|Vega:OTTHUMG00000011694 11 11p15.5 zinc finger protein 195 protein-coding ZNF195 zinc finger protein 195 O hypoxia-regulated factor-1|krueppel family zinc finger protein (znfp104) 20121230 -9606 7750 ZMYM2 RP11-264J4.7 FIM|MYM|RAMP|SCLL|ZNF198 HGNC:12989|MIM:602221|Ensembl:ENSG00000121741|HPRD:03745|Vega:OTTHUMG00000016507 13 13q11-q12 zinc finger, MYM-type 2 protein-coding ZMYM2 zinc finger, MYM-type 2 O fused in myeloproliferative disorders protein|rearranged in an atypical myeloproliferative disorder|zinc finger MYM-type protein 2|zinc finger protein 198 20121230 -9606 7752 ZNF200 - - HGNC:12993|MIM:603231|Ensembl:ENSG00000010539|HPRD:04452|Vega:OTTHUMG00000129317 16 16p13.3 zinc finger protein 200 protein-coding ZNF200 zinc finger protein 200 O - 20121230 -9606 7753 ZNF202 - ZKSCAN10 HGNC:12994|MIM:603430|Ensembl:ENSG00000166261|HPRD:04577|Vega:OTTHUMG00000166008 11 11q23.3 zinc finger protein 202 protein-coding ZNF202 zinc finger protein 202 O zinc finger protein with KRAB and SCAN domains 10 20121230 -9606 7754 ZNF204P - ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 HGNC:12995|MIM:603282 6 6p21.3 zinc finger protein 204, pseudogene pseudo ZNF204P zinc finger protein 204, pseudogene O - 20121230 -9606 7755 ZNF205 - RhitH|ZNF210|Zfp13 HGNC:12996|MIM:603436|Ensembl:ENSG00000122386|HPRD:04580|Vega:OTTHUMG00000148676 16 16p13.3 zinc finger protein 205 protein-coding ZNF205 zinc finger protein 205 O transcriptional repressor RhitH|zinc finger protein 210 20121230 -9606 7756 ZNF207 - - HGNC:12998|MIM:603428|Ensembl:ENSG00000010244|HPRD:04576|Vega:OTTHUMG00000132810 17 17q11.2 zinc finger protein 207 protein-coding ZNF207 zinc finger protein 207 O - 20121230 -9606 7757 ZNF208 - PMIDP|ZNF95 HGNC:12999|MIM:603977|Ensembl:ENSG00000160321|HPRD:05998 19 19p12 zinc finger protein 208 protein-coding ZNF208 zinc finger protein 208 O zinc finger protein 95 20121230 -9606 7760 ZNF213 - CR53|ZKSCAN21 HGNC:13005|MIM:608387|Ensembl:ENSG00000085644|HPRD:12224|Vega:OTTHUMG00000177519 16 16p13.3 zinc finger protein 213 protein-coding ZNF213 zinc finger protein 213 O putative transcription factor CR53|zinc finger protein with KRAB and SCAN domains 21 20121230 -9606 7761 ZNF214 - BAZ-1|BAZ1 HGNC:13006|MIM:605015|Ensembl:ENSG00000149050|HPRD:05424|Vega:OTTHUMG00000165618 11 11p15.4 zinc finger protein 214 protein-coding ZNF214 zinc finger protein 214 O BAZ 1|BWSCR2-associated zinc finger protein 1 20121230 -9606 7762 ZNF215 - BAZ-2|BAZ2|ZKSCAN11 HGNC:13007|MIM:605016|Ensembl:ENSG00000149054|HPRD:05425|Vega:OTTHUMG00000165507 11 11p15.4 zinc finger protein 215 protein-coding ZNF215 zinc finger protein 215 O BAZ 2|BWSCR2-associated zinc finger protein 2|zinc finger protein with KRAB and SCAN domains 11 20121230 -9606 7763 ZFAND5 RP11-63P12.8 ZA20D2|ZFAND5A|ZNF216 HGNC:13008|MIM:604761|Ensembl:ENSG00000107372|HPRD:05302|Vega:OTTHUMG00000020008 9 9q13-q21 zinc finger, AN1-type domain 5 protein-coding ZFAND5 zinc finger, AN1-type domain 5 O AN1-type zinc finger protein 5|zinc finger A20 domain-containing protein 2|zinc finger protein 216|zinc finger, A20 domain containing 2 20121230 -9606 7764 ZNF217 RP4-724E16.3 ZABC1 HGNC:13009|MIM:602967|Ensembl:ENSG00000171940|HPRD:04272|Vega:OTTHUMG00000032764 20 20q13.2 zinc finger protein 217 protein-coding ZNF217 zinc finger protein 217 O - 20121230 -9606 7766 ZNF223 - - HGNC:13016|Ensembl:ENSG00000178386|HPRD:15749|Vega:OTTHUMG00000182311 19 19q13.2 zinc finger protein 223 protein-coding ZNF223 zinc finger protein 223 O Homo sapiens zinc finger protein 223|KRAB A domain|Zinc finger protein ZNF223 20121230 -9606 7767 ZNF224 - BMZF-2|BMZF2|KOX22|ZNF255|ZNF27 HGNC:13017|MIM:194555|Ensembl:ENSG00000267680|HPRD:06094|Vega:OTTHUMG00000182313 19 19q13.2 zinc finger protein 224 protein-coding ZNF224 zinc finger protein 224 O bone marrow zinc finger 2|zinc finger 2, bone marrow|zinc finger protein 233|zinc finger protein 255|zinc finger protein 27 (KOX 22)|zinc finger protein KOX22|zinc finger protein ZNF255 20121230 -9606 7768 ZNF225 - - HGNC:13018|Ensembl:ENSG00000256294|HPRD:15750|Vega:OTTHUMG00000182336 19 19q13.2 zinc finger protein 225 protein-coding ZNF225 zinc finger protein 225 O C2-H2 type zinc finger protein 20121230 -9606 7769 ZNF226 - - HGNC:13019|Ensembl:ENSG00000167380|HPRD:15751|Vega:OTTHUMG00000182351 19 19q13.2 zinc finger protein 226 protein-coding ZNF226 zinc finger protein 226 O Kruppel-associated box protein 20121230 -9606 7770 ZNF227 - - HGNC:13020|Ensembl:ENSG00000131115|HPRD:15752|Vega:OTTHUMG00000182352 19 - zinc finger protein 227 protein-coding ZNF227 zinc finger protein 227 O - 20121230 -9606 7771 ZFP112 - ZNF228 HGNC:13021|Ensembl:ENSG00000062370|HPRD:15753|Vega:OTTHUMG00000182357 19 19q13.2 zinc finger protein 112 homolog (mouse) protein-coding ZFP112 zinc finger protein 112 homolog (mouse) O zfp-112|zinc finger protein 112 homolog|zinc finger protein 228 20121230 -9606 7772 ZNF229 - - HGNC:13022|Ensembl:ENSG00000167383|HPRD:18324|Vega:OTTHUMG00000182377 19 19q13.31 zinc finger protein 229 protein-coding ZNF229 zinc finger protein 229 O - 20121230 -9606 7773 ZNF230 - FDZF2 HGNC:13024|Ensembl:ENSG00000159882|HPRD:15754|Vega:OTTHUMG00000182307 19 19q13.31 zinc finger protein 230 protein-coding ZNF230 zinc finger protein 230 O zinc finger protein FDZF2 20121230 -9606 7775 ZNF232 - ZSCAN11 HGNC:13026|Ensembl:ENSG00000167840|HPRD:15755|Vega:OTTHUMG00000099450 17 17p13.2 zinc finger protein 232 protein-coding ZNF232 zinc finger protein 232 O zinc finger and SCAN domain-containing protein 11 20121230 -9606 7776 ZNF236 - ZNF236A|ZNF236B HGNC:13028|MIM:604760|Ensembl:ENSG00000130856|HPRD:05301|Vega:OTTHUMG00000179331 18 18q22-q23 zinc finger protein 236 protein-coding ZNF236 zinc finger protein 236 O regulated by glucose 20121230 -9606 7779 SLC30A1 - ZNT1|ZRC1 HGNC:11012|MIM:609521|Ensembl:ENSG00000170385|HPRD:15366|Vega:OTTHUMG00000036995 1 1q32.3 solute carrier family 30 (zinc transporter), member 1 protein-coding SLC30A1 solute carrier family 30 (zinc transporter), member 1 O solute carrier family 30 member 1|zinc transporter 1|znT-1 20121230 -9606 7780 SLC30A2 RP11-96L14.2 PP12488|ZNT2|ZnT-2 HGNC:11013|MIM:609617|Ensembl:ENSG00000158014|HPRD:18057|Vega:OTTHUMG00000007508 1 1p35.3 solute carrier family 30 (zinc transporter), member 2 protein-coding SLC30A2 solute carrier family 30 (zinc transporter), member 2 O solute carrier family 30 member 2|zinc transporter 2 20121230 -9606 7781 SLC30A3 - ZNT3 HGNC:11014|MIM:602878|Ensembl:ENSG00000115194|HPRD:11924|Vega:OTTHUMG00000128409 2 2p23.3 solute carrier family 30 (zinc transporter), member 3 protein-coding SLC30A3 solute carrier family 30 (zinc transporter), member 3 O solute carrier family 30 member 3|zinc transporter 3|zinc transporter ZnT-3|znT-3 20121230 -9606 7782 SLC30A4 - ZNT4 HGNC:11015|MIM:602095|Ensembl:ENSG00000104154|HPRD:03651|Vega:OTTHUMG00000131439 15 15q21.1|15q21.1 solute carrier family 30 (zinc transporter), member 4 protein-coding SLC30A4 solute carrier family 30 (zinc transporter), member 4 O solute carrier family 30 member 4|zinc transporter 4|znT-4 20121230 -9606 7783 ZP2 - ZPA|Zp-2 HGNC:13188|MIM:182888|Ensembl:ENSG00000103310|HPRD:01689|Vega:OTTHUMG00000090681 16 16p12 zona pellucida glycoprotein 2 (sperm receptor) protein-coding ZP2 zona pellucida glycoprotein 2 (sperm receptor) O zona pellucida glycoprotein ZP2|zona pellucida protein A|zona pellucida sperm-binding protein 2 20121230 -9606 7784 ZP3 - ZP3A|ZP3B|ZPC|Zp-3 HGNC:13189|MIM:182889|Ensembl:ENSG00000188372|HPRD:01690|Vega:OTTHUMG00000130575 7 7q11.23 zona pellucida glycoprotein 3 (sperm receptor) protein-coding ZP3 zona pellucida glycoprotein 3 (sperm receptor) O ZP3A/ZP3B|sperm receptor|zona pellucida glycoprotein 3A (sperm receptor)|zona pellucida glycoprotein 3B|zona pellucida glycoprotein ZP3|zona pellucida protein C|zona pellucida sperm-binding protein 3 20121230 -9606 7786 MAP3K12 - DLK|MEKK12|MUK|ZPK|ZPKP1 HGNC:6851|MIM:600447|Ensembl:ENSG00000139625|HPRD:02709|Vega:OTTHUMG00000169854 12 12q13 mitogen-activated protein kinase kinase kinase 12 protein-coding MAP3K12 mitogen-activated protein kinase kinase kinase 12 O MAPK-upstream kinase|dual leucine zipper bearing kinase|dual leucine zipper kinase DLK|leucine zipper protein kinase|mixed lineage kinase|protein kinase MUK 20121230 -9606 7789 ZXDA - ZNF896 HGNC:13198|MIM:300235|Ensembl:ENSG00000198205|HPRD:02210|Vega:OTTHUMG00000021688 X Xp11.1 zinc finger, X-linked, duplicated A protein-coding ZXDA zinc finger, X-linked, duplicated A O zinc finger X-linked protein ZXDA|zinc finger protein 896 20121230 -9606 7791 ZYX - ESP-2|HED-2 HGNC:13200|MIM:602002|Ensembl:ENSG00000159840|HPRD:03592|Vega:OTTHUMG00000023822 7 7q32 zyxin protein-coding ZYX zyxin O zyxin-2 20121230 -9606 7792 CCV - - HGNC:1624|MIM:115665 1 1p36 cataract, congenital, Volkmann type unknown CCV cataract, congenital, Volkmann type O - 20120622 -9606 7795 MEMO1 - - MIM:601201 1 1p36.1-p35 Methylation modifier for class I HLA unknown - - - - 20121209 -9606 7798 LUZP1 RP1-184J9.3 LUZP HGNC:14985|MIM:601422|Ensembl:ENSG00000169641|HPRD:03250|Vega:OTTHUMG00000003227 1 1p36 leucine zipper protein 1 protein-coding LUZP1 leucine zipper protein 1 O - 20121230 -9606 7799 PRDM2 RP5-1177E19.1 HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2 HGNC:9347|MIM:601196|Ensembl:ENSG00000116731|HPRD:03120|Vega:OTTHUMG00000007917 1 1p36.21 PR domain containing 2, with ZNF domain protein-coding PRDM2 PR domain containing 2, with ZNF domain O GATA-3 binding protein G3B|GATA-3-binding protein G3B|MTE-binding protein|PR domain zinc finger protein 2|PR domain-containing protein 2|lysine N-methyltransferase 8|retinoblastoma protein-binding zinc finger protein|retinoblastoma protein-interacting zinc finger protein|zinc finger protein RIZ|zinc-finger DNA-binding protein 20121230 -9606 7802 DNALI1 - P28|dJ423B22.5|hp28 HGNC:14353|MIM:602135|Ensembl:ENSG00000163879|HPRD:03681|Vega:OTTHUMG00000004222 1 1p35.1 dynein, axonemal, light intermediate chain 1 protein-coding DNALI1 dynein, axonemal, light intermediate chain 1 O axonemal dynein light intermediate polypeptide 1|dJ423B22.5 (axonemal dynein light chain (hp28))|dynein, axonemal, light intermediate polypeptide 1|inner dynein arm light chain, axonemal|inner dynein arm, homolog of clamydomonas 20121230 -9606 7803 PTP4A1 RP5-1148A21.2 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 HGNC:9634|MIM:601585|Ensembl:ENSG00000112245|HPRD:03349|Vega:OTTHUMG00000014949 6 6q12 protein tyrosine phosphatase type IVA, member 1 protein-coding PTP4A1 protein tyrosine phosphatase type IVA, member 1 O PTP(CAAXI)|Protein tyrosine phosphatase IVA1|protein tyrosine phosphatase type IVA 1|protein tyrosine phosphatase type IVA protein 1|protein-tyrosine phosphatase 4a1|protein-tyrosine phosphatase of regenerating liver 1 20121230 -9606 7804 LRP8 - APOER2|HSZ75190|LRP-8|MCI1 HGNC:6700|MIM:602600|Ensembl:ENSG00000157193|HPRD:04002|Vega:OTTHUMG00000008924 1 1p34 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor protein-coding LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor O ApoE receptor 2|low-density lipoprotein receptor-related protein 8 20121230 -9606 7805 LAPTM5 RP5-1166H10.3 CLAST6 HGNC:29612|MIM:601476|Ensembl:ENSG00000162511|HPRD:03280|Vega:OTTHUMG00000003707 1 1p34 lysosomal protein transmembrane 5 protein-coding LAPTM5 lysosomal protein transmembrane 5 O CD40-ligand-activated specific transcripts|human retinoic acid-inducible E3 protein|lysosomal associated multispanning membrane protein 5|lysosomal multispanning membrane protein 5|lysosomal-associated multitransmembrane protein 5|lysosomal-associated transmembrane protein 5|retinoic acid-inducible E3 protein 20121230 -9606 7808 AIR - - MIM:601676 1 1p31 Acute insulin response (2) unknown - - - - 20120622 -9606 7809 BSND GS1-118I5.1 BART|DFNB73 HGNC:16512|MIM:606412|Ensembl:ENSG00000162399|HPRD:05914|Vega:OTTHUMG00000008112 1 1p32.1 Bartter syndrome, infantile, with sensorineural deafness (Barttin) protein-coding BSND Bartter syndrome, infantile, with sensorineural deafness (Barttin) O barttin|deafness, autosomal recessive 73 20121230 -9606 7812 CSDE1 - D1S155E|RP5-1000E10.3|UNR HGNC:29905|MIM:191510|Ensembl:ENSG00000009307|HPRD:15949|Vega:OTTHUMG00000012060 1 1p22 cold shock domain containing E1, RNA-binding protein-coding CSDE1 cold shock domain containing E1, RNA-binding O N-ras upstream gene protein|NRAS-related|cold shock domain-containing protein E1|upstream of NRAS 20121230 -9606 7813 EVI5 - NB4S HGNC:3501|MIM:602942|Ensembl:ENSG00000067208|HPRD:04249|Vega:OTTHUMG00000010895 1 1p22.1 ecotropic viral integration site 5 protein-coding EVI5 ecotropic viral integration site 5 O EVI-5|dJ846D11.1 (ecotropic viral integration site 5)|ecotropic viral integration site 5 protein homolog|neuroblastoma stage 4S gene protein 20121230 -9606 7818 DAP3 - DAP-3|MRP-S29|MRPS29|bMRP-10 HGNC:2673|MIM:602074|Ensembl:ENSG00000132676|HPRD:03646|Vega:OTTHUMG00000035439 1 1q22 death associated protein 3 protein-coding DAP3 death associated protein 3 O 28S ribosomal protein S29, mitochondrial|S29mt|death-associated protein 3|ionizing radiation resistance conferring protein|mitochondrial 28S ribosomal protein S29 20121230 -9606 7824 D1S111 - D1S61|MS336 MIM:157560 1 1q23 Minisatellite 33.6 unknown - - - - 20100404 -9606 7827 NPHS2 - PDCN|SRN1 HGNC:13394|MIM:604766|Ensembl:ENSG00000116218|HPRD:05303|Vega:OTTHUMG00000035252 1 1q25.2 nephrosis 2, idiopathic, steroid-resistant (podocin) protein-coding NPHS2 nephrosis 2, idiopathic, steroid-resistant (podocin) O podocin 20121230 -9606 7830 PHA2A - PHA2 MIM:145260 1 1q31-q42 Pseudohypoaldosteronism type II (gene A) unknown - - - - 20120906 -9606 7832 BTG2 - PC3|TIS21 HGNC:1131|MIM:601597|Ensembl:ENSG00000159388|HPRD:03357|Vega:OTTHUMG00000035834 1 1q32 BTG family, member 2 protein-coding BTG2 BTG family, member 2 O B-cell translocation gene 2|NGF-inducible anti-proliferative protein PC3|nerve growth factor-inducible anti-proliferative|pheochromacytoma cell-3|protein BTG2 20121230 -9606 7833 SLEB1 - SLE1 HGNC:11080|MIM:601744 1 1q41-q42 systemic lupus erythematosus susceptibility 1 unknown SLEB1 systemic lupus erythematosus susceptibility 1 O - 20120622 -9606 7834 PCAP - HPC2|HPC8 HGNC:8645|MIM:602759 1 1q42.2-q43 predisposing for prostate cancer unknown PCAP predisposing for prostate cancer O - 20121209 -9606 7837 PXDN - D2S448|D2S448E|MG50|PRG2|PXN|VPO HGNC:14966|MIM:605158|Ensembl:ENSG00000130508|Vega:OTTHUMG00000059697 2 2p25 peroxidasin homolog (Drosophila) protein-coding PXDN peroxidasin homolog (Drosophila) O melanoma-associated antigen MG50|p53-responsive gene 2 protein|peroxidasin homolog|vascular peroxidase 1 20121230 -9606 7839 LSL - - MIM:601694 2 2p21 Leptin, serum levels of unknown - - - - 20121007 -9606 7840 ALMS1 - ALSS HGNC:428|MIM:606844|Ensembl:ENSG00000116127|HPRD:06023|Vega:OTTHUMG00000152812 2 2p13 Alstrom syndrome 1 protein-coding ALMS1 Alstrom syndrome 1 O Alstrom syndrome protein 1 20121230 -9606 7841 MOGS - CDG2B|CWH41|DER7|GCS1 HGNC:24862|MIM:601336|Ensembl:ENSG00000115275|HPRD:03214|Vega:OTTHUMG00000152886 2 2p13.1 mannosyl-oligosaccharide glucosidase protein-coding MOGS mannosyl-oligosaccharide glucosidase O glucosidase I|processing A-glucosidase I 20121230 -9606 7842 IGKJ@ - IGKJ HGNC:5718|MIM:146970 2 2p12 immunoglobulin kappa joining cluster other IGKJ@ immunoglobulin kappa joining cluster O - 20120208 -9606 7844 RNF103 - HKF-1|KF-1|KF1|ZFP-103|ZFP103 HGNC:12859|MIM:602507|Ensembl:ENSG00000239305|HPRD:03939|Vega:OTTHUMG00000153197 2 2p11.2 ring finger protein 103 protein-coding RNF103 ring finger protein 103 O E3 ubiquitin-protein ligase RNF103|zinc finger protein 103 homolog|zinc finger protein expressed in cerebellum 20121230 -9606 7845 PAFAH1B1P1 - LIS2|PAFAH1P1 HGNC:8577 2 2p11.2 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 pseudogene 1 pseudo PAFAH1B1P1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 pseudogene 1 O - 20121230 -9606 7846 TUBA1A - B-ALPHA-1|LIS3|TUBA3 HGNC:20766|MIM:602529|Ensembl:ENSG00000167552|HPRD:03959|Vega:OTTHUMG00000169511 12 12q13.12 tubulin, alpha 1a protein-coding TUBA1A tubulin, alpha 1a O hum-a-tub1|hum-a-tub2|tubulin B-alpha-1|tubulin alpha-1A chain|tubulin alpha-3 chain|tubulin, alpha, brain-specific 20121230 -9606 7849 PAX8 - - HGNC:8622|MIM:167415|Ensembl:ENSG00000125618|HPRD:01335|Vega:OTTHUMG00000128529 2 2q13 paired box 8 protein-coding PAX8 paired box 8 O paired box protein Pax-8|paired domain gene 8 20121230 -9606 7850 IL1R2 - CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1RB HGNC:5994|MIM:147811|Ensembl:ENSG00000115590|HPRD:00995|Vega:OTTHUMG00000130695 2 2q12 interleukin 1 receptor, type II protein-coding IL1R2 interleukin 1 receptor, type II O CD121 antigen-like family member B|IL-1 type II receptor|IL-1R-beta|antigen CDw121b|interleukin-1 receptor beta|interleukin-1 receptor type 2|interleukin-1 receptor type II|type II interleukin-1 receptor, beta 20121230 -9606 7851 MALL - BENE HGNC:6818|MIM:602022|Ensembl:ENSG00000144063|HPRD:15997|Vega:OTTHUMG00000131196 2 2q13 mal, T-cell differentiation protein-like protein-coding MALL mal, T-cell differentiation protein-like O MAL-like protein 20121230 -9606 7852 CXCR4 - CD184|D2S201E|FB22|HM89|HSY3RR|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM HGNC:2561|MIM:162643|Ensembl:ENSG00000121966|HPRD:01217|Vega:OTTHUMG00000153583 2 2q21 chemokine (C-X-C motif) receptor 4 protein-coding CXCR4 chemokine (C-X-C motif) receptor 4 O C-X-C chemokine receptor type 4|CD184 antigen|CXC-R4|CXCR-4|SDF-1 receptor|fusin|leukocyte-derived seven transmembrane domain receptor|leukocyte-derived seven-transmembrane-domain receptor|lipopolysaccharide-associated protein 3|neuropeptide Y receptor Y3|seven transmembrane helix receptor|seven-transmembrane-segment receptor, spleen|stromal cell-derived factor 1 receptor 20121230 -9606 7855 FZD5 - C2orf31|HFZ5 HGNC:4043|MIM:601723|Ensembl:ENSG00000163251|HPRD:03427|Vega:OTTHUMG00000154790 2 2q33.3 frizzled family receptor 5 protein-coding FZD5 frizzled family receptor 5 O Wnt receptor|frizzled 5, seven transmembrane spanning receptor|frizzled-5|fz-5|fzE5|seven-transmembrane receptor frizzled-5 20121230 -9606 7857 SCG2 - CHGC|EM66|SN|SgII HGNC:10575|MIM:118930|Ensembl:ENSG00000171951|HPRD:06762|Vega:OTTHUMG00000133166 2 2q35-q36 secretogranin II protein-coding SCG2 secretogranin II O chromogranin-C|secretogranin-2|secretoneurin 20121230 -9606 7862 BRPF1 - BR140 HGNC:14255|MIM:602410|Ensembl:ENSG00000156983|HPRD:03875|Vega:OTTHUMG00000097033 3 3p26-p25 bromodomain and PHD finger containing, 1 protein-coding BRPF1 bromodomain and PHD finger containing, 1 O bromodomain and PHD finger-containing protein 1|bromodomain-containing protein, 140kD|peregrin 20121230 -9606 7864 SCLC1 - SCCL|SCLC MIM:182280 3 3p23-p21 small cell cancer of the lung unknown - - - - 20120622 -9606 7866 IFRD2 - IFNRP|SKMc15|SM15 HGNC:5457|MIM:602725|Ensembl:ENSG00000214706|HPRD:04101|Vega:OTTHUMG00000156935 3 3p21.3 interferon-related developmental regulator 2 protein-coding IFRD2 interferon-related developmental regulator 2 O interferon-related protein 20121230 -9606 7867 MAPKAPK3 - 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MK-3 HGNC:6888|MIM:602130|Ensembl:ENSG00000114738|HPRD:03678|Vega:OTTHUMG00000156850 3 3p21.3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding MAPKAPK3 mitogen-activated protein kinase-activated protein kinase 3 O MAP kinase-activated protein kinase 3|MAPK-activated protein kinase 3|MAPKAP kinase 3|chromosome 3p kinase 20121230 -9606 7869 SEMA3B - LUCA-1|SEMA5|SEMAA|SemA|semaV HGNC:10724|MIM:601281|HPRD:03179 3 3p21.3 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein-coding SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B O sema A(V)|sema V|semaphorin A|semaphorin-3B|semaphorin-V 20121230 -9606 7870 TRR - - MIM:601994 3 3p21.3 transfer RNA arginine tRNA - - - - 20121209 -9606 7871 SLMAP UNQ1847/PRO3577 SLAP HGNC:16643|MIM:602701|Ensembl:ENSG00000163681|HPRD:04079|Vega:OTTHUMG00000133764 3 3p21.2-p14.3 sarcolemma associated protein protein-coding SLMAP sarcolemma associated protein O Sarcolemmal-associated protein|sarcolemmal membrane-associated protein 20121230 -9606 7873 MANF - ARMET|ARP HGNC:15461|MIM:601916|Ensembl:ENSG00000145050|HPRD:03558|Vega:OTTHUMG00000156897 3 3p21.1 mesencephalic astrocyte-derived neurotrophic factor protein-coding MANF mesencephalic astrocyte-derived neurotrophic factor O arginine-rich, mutated in early stage tumors 20121230 -9606 7874 USP7 - HAUSP|TEF1 HGNC:12630|MIM:602519|Ensembl:ENSG00000187555|HPRD:03950|Vega:OTTHUMG00000176903 16 16p13.3 ubiquitin specific peptidase 7 (herpes virus-associated) protein-coding USP7 ubiquitin specific peptidase 7 (herpes virus-associated) O Herpes virus-associated ubiquitin-specific protease|deubiquitinating enzyme 7|herpesvirus-associated ubiquitin-specific protease|ubiquitin carboxyl-terminal hydrolase 7|ubiquitin specific protease 7 (herpes virus-associated)|ubiquitin thioesterase 7|ubiquitin-specific-processing protease 7 20121230 -9606 7879 RAB7A - PRO2706|RAB7 HGNC:9788|MIM:602298|Ensembl:ENSG00000075785|HPRD:03805|Vega:OTTHUMG00000159812 3 3q21.3 RAB7A, member RAS oncogene family protein-coding RAB7A RAB7A, member RAS oncogene family O RAB7, member RAS oncogene family|Ras-associated protein RAB7|ras-related protein Rab-7a 20121230 -9606 7880 MBS2 - HCFP1 HGNC:6927|MIM:601471 3 3q21-q22 Moebius syndrome 2 unknown MBS2 Moebius syndrome 2 O - 20121212 -9606 7881 KCNAB1 - AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 HGNC:6228|MIM:601141|Ensembl:ENSG00000169282|HPRD:03089|Vega:OTTHUMG00000158552 3 3q26.1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein-coding KCNAB1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 O K(+) channel subunit beta-1|potassium channel beta 3 chain|potassium channel beta3 subunit|potassium channel shaker chain beta 1a|potassium voltage-gated channel beta subunit|voltage-gated potassium channel beta-1 subunit|voltage-gated potassium channel subunit beta-1 20121230 -9606 7884 SLBP - HBP HGNC:10904|MIM:602422|Ensembl:ENSG00000163950|HPRD:03884|Vega:OTTHUMG00000089349 4 4p16.3 stem-loop binding protein protein-coding SLBP stem-loop binding protein O hairpin binding protein, histone|histone RNA hairpin-binding protein|histone binding protein|histone stem-loop binding protein|histone stem-loop-binding protein|stem-loop (histone) binding protein 20121230 -9606 7885 CRSA - CRS3 MIM:600593 4 4p16 Craniosynostosis, Adelaide type unknown - - - - 20120622 -9606 7889 PSORS3 - - HGNC:9575|MIM:601454 4 4q psoriasis susceptibility 3 unknown PSORS3 psoriasis susceptibility 3 O - 20120622 -9606 7892 FECB - - MIM:134720 4 4q21-q25 Fecundity gene, Boorla, of sheep, homolog of unknown - - - - 20110215 -9606 7895 LAG5 - - MIM:151450 4 - Leukocyte antigen group 5 unknown - - - - 20120622 -9606 7896 TS13 - - MIM:187320 4 - Temperature sensitivity complementation, ts13 unknown - - - - 20110215 -9606 7897 ZNF4 - - - 5 - zinc finger protein-4 unknown - - - - 20100404 -9606 7900 ZNF5 - - - 5 - zinc finger protein-5 unknown - - - - 20100404 -9606 7903 ST8SIA4 - PST|PST1|SIAT8D|ST8SIA-IV HGNC:10871|MIM:602547|Ensembl:ENSG00000113532|HPRD:03970|Vega:OTTHUMG00000128727 5 5q21 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 O CMP-N-acetylneuraminate-poly-alpha-2,8-sialyl transferase|CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase|SIAT8-D|ST8SiaIV|alpha-2,8-sialyltransferase 8D|polysialyltransferase-1|sialyltransferase 8 (alpha-2, 8-polysialytransferase) D|sialyltransferase 8D|sialytransferase St8Sia IV 20121230 -9606 7905 REEP5 - C5orf18|D5S346|DP1|TB2|YOP1 HGNC:30077|MIM:125265|Ensembl:ENSG00000129625|HPRD:15918|Vega:OTTHUMG00000128807 5 5q22-q23 receptor accessory protein 5 protein-coding REEP5 receptor accessory protein 5 O deleted in polyposis 1|polyposis coli region hypothetical protein DP1|polyposis locus protein 1|receptor expression enhancing protein 5|receptor expression-enhancing protein 5 20121230 -9606 7908 EOS - - MIM:131400 5 5q31-q33 eosinophilia, familial unknown - - - - 20121209 -9606 7909 HEMC - HCI MIM:602089 - - hemangioma, capillary, hereditary unknown - - - - 20120622 -9606 7910 PFBI - - MIM:248310 5 5q31-q33 Plasmodium falciparum blood infection levels unknown - - - - 20120622 -9606 7911 SM1 - - MIM:181460 5 5q31-q33 Schistosoma mansoni, susceptibility/resistance to unknown - - - - 20120622 -9606 7913 DEK - D6S231E HGNC:2768|MIM:125264|Ensembl:ENSG00000124795|HPRD:00503|Vega:OTTHUMG00000014319 6 6p22.3 DEK oncogene protein-coding DEK DEK oncogene O DEK oncogene (DNA binding)|protein DEK 20121230 -9606 7915 ALDH5A1 - SSADH|SSDH HGNC:408|MIM:610045|Ensembl:ENSG00000112294|HPRD:08361|Vega:OTTHUMG00000014356 6 6p22 aldehyde dehydrogenase 5 family, member A1 protein-coding ALDH5A1 aldehyde dehydrogenase 5 family, member A1 O NAD(+)-dependent succinic semialdehyde dehydrogenase|aldehyde dehydrogenase family 5 member A1|mitochondrial succinate semialdehyde dehydrogenase|succinate-semialdehyde dehydrogenase, mitochondrial 20121230 -9606 7916 PRRC2A DADB-70P7.5 BAT2|D6S51|D6S51E|G2 HGNC:13918|MIM:142580|Ensembl:ENSG00000204469|HPRD:00807|Vega:OTTHUMG00000031168 6 6p21.3 proline-rich coiled-coil 2A protein-coding PRRC2A proline-rich coiled-coil 2A O HLA-B associated transcript 2|HLA-B-associated transcript 2|large proline-rich protein BAT2|proline-rich and coiled-coil-containing protein 2A|protein G2|protein PRRC2A 20121230 -9606 7917 BAG6 DADB-70P7.10-021 BAG-6|BAT3|D6S52E|G3 HGNC:13919|MIM:142590|Ensembl:ENSG00000204463|HPRD:00808|Vega:OTTHUMG00000031171 6 6p21.3 BCL2-associated athanogene 6 protein-coding BAG6 BCL2-associated athanogene 6 O BAG family molecular chaperone regulator 6|HLA-B associated transcript 3|HLA-B associated transcript-3|HLA-B-associated transcript 3|large proline-rich protein BAG6|large proline-rich protein BAT3|protein G3|protein Scythe|scythe 20121230 -9606 7918 GPANK1 DAMA-236L13.5 ANKRD59|BAT4|D6S54E|G5|GPATCH10 HGNC:13920|MIM:142610|Ensembl:ENSG00000204438|HPRD:00810|Vega:OTTHUMG00000031174 6 6p21.3 G patch domain and ankyrin repeats 1 protein-coding GPANK1 G patch domain and ankyrin repeats 1 O G patch domain and ankyrin repeat-containing protein 1|G patch domain and ankyrin repeats-containing protein 1|G patch domain containing 10|HLA-B-associated transcript 4|ankyrin repeat domain-containing protein 59|g patch domain-containing protein 10|protein BAT4|protein G5 20121230 -9606 7919 DDX39B DAAP-97M17.4 BAT1|D6S81E|UAP56 HGNC:13917|MIM:142560|Ensembl:ENSG00000198563|HPRD:00805|Vega:OTTHUMG00000031165 6 6p21.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein-coding DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B O 56 kDa U2AF65-associated protein|ATP-dependent RNA helicase p47|HLA-B-associated transcript 1 protein|nuclear RNA helicase (DEAD family)|spliceosome RNA helicase BAT1|spliceosome RNA helicase DDX39B 20121230 -9606 7920 ABHD16A DAQB-195H10.5 BAT5|D6S82E|NG26|PP199 HGNC:13921|MIM:142620|Ensembl:ENSG00000204427|HPRD:15929|Vega:OTTHUMG00000031177 6 6p21.3 abhydrolase domain containing 16A protein-coding ABHD16A abhydrolase domain containing 16A O HLA-B associated transcript 5|abhydrolase domain-containing protein 16A|protein G5 20121230 -9606 7921 D6S207E - HLA-HA2 MIM:600642 6 6p21.3 Minor histocompatibility antigen HA-2 other - - - - 20100404 -9606 7922 SLC39A7 DADB-100D22.3 D6S115E|D6S2244E|H2-KE4|HKE4|KE4|RING5|ZIP7 HGNC:4927|MIM:601416|Ensembl:ENSG00000112473|HPRD:09028|Vega:OTTHUMG00000031238 6 6p21.3 solute carrier family 39 (zinc transporter), member 7 protein-coding SLC39A7 solute carrier family 39 (zinc transporter), member 7 O HLA class II region expressed gene KE4|Ke4 gene, mouse, human homolog of|histidine-rich membrane protein Ke4|really interesting new gene 5 protein|solute carrier family 39 member 7|zinc transporter SLC39A7 20121230 -9606 7923 HSD17B8 DADB-100D22.4 D6S2245E|FABG|FABGL|H2-KE6|HKE6|KE6|RING2|SDR30C1|dJ1033B10.9 HGNC:3554|MIM:601417|Ensembl:ENSG00000204228|HPRD:03248|Vega:OTTHUMG00000031117 6 6p21.3 hydroxysteroid (17-beta) dehydrogenase 8 protein-coding HSD17B8 hydroxysteroid (17-beta) dehydrogenase 8 O 17-beta-HSD 8|17-beta-hydroxysteroid dehydrogenase 8|3-oxoacyl-[acyl-carrier-protein] reductase|estradiol 17-beta-dehydrogenase 8|estrogen 17-oxidoreductase|ke-6|protein Ke6|really interesting new gene 2 protein|short chain dehydrogenase/reductase family 30C, member 1|testosterone 17-beta-dehydrogenase 8 20121230 -9606 7925 IGLP1 - - HGNC:5873|MIM:147080 6 6p21.3 immune response to synthetic polypeptides 1 other IGLP1 immune response to synthetic polypeptides 1 O - 20080913 -9606 7926 IGLP2 - - HGNC:5874|MIM:147090 6 6p21.3 immune response to synthetic polypeptides 2 other IGLP2 immune response to synthetic polypeptides 2 O - 20080913 -9606 7927 IGAT - - MIM:146820 6 6p21.3 Immune response to synthetic polypeptide--IRGAT unknown - - - - 20120906 -9606 7928 ISCW - ISSCW MIM:146850 6 6p21.3 Immune suppression to streptococcal antigen unknown - - - - 20120906 -9606 7932 OR2H2 DADB-225M10.1 FAT11|OLFR2|OLFR42B|OR2H3|dJ271M21.2|hs6M1-12 HGNC:8253|MIM:600578|Ensembl:ENSG00000204657|HPRD:08367|Vega:OTTHUMG00000031052 6 6p21.3 olfactory receptor, family 2, subfamily H, member 2 protein-coding OR2H2 olfactory receptor, family 2, subfamily H, member 2 O Olfactory receptor 2|olfactory receptor 2H2|olfactory receptor 2H3|olfactory receptor OR6-36|olfactory receptor, family 2, subfamily H, member 3|olfactory receptor-like protein FAT11 20121230 -9606 7933 OPLL - - MIM:602475 - - ossification of posterior longitudinal ligament of spine unknown - - - - 20110215 -9606 7936 RDBP DADB-122G4.4 D6S45|NELF-E|RD|RDP HGNC:13974|MIM:154040|Ensembl:ENSG00000204356|HPRD:01096|Vega:OTTHUMG00000031046 6 6p21.3 RD RNA binding protein protein-coding RDBP RD RNA binding protein O RD RNA-binding protein|RNA-binding protein RD|major histocompatibility complex gene RD|negative elongation factor E|negative elongation factor polypeptide E|nuclear protein 20121230 -9606 7937 RWS - - MIM:179450 6 6p21.3 Ragweed sensitivity unknown - - - - 20110215 -9606 7938 CP20 - LCP20 MIM:153380 6 6p21.3-p21.2 Lymphocyte cytosolic protein, molecular weight 20kD unknown - - - - 20100404 -9606 7939 LAP - - MIM:150270 6 6p21.3-p21.2 Laryngeal adductor paralysis unknown - - - - 20110215 -9606 7940 LST1 DAAP-90L16.2 B144|D6S49E|LST-1 HGNC:14189|MIM:109170|Ensembl:ENSG00000204482|HPRD:00172|Vega:OTTHUMG00000031264 6 6p21.3 leukocyte specific transcript 1 protein-coding LST1 leukocyte specific transcript 1 O leukocyte-specific transcript 1 protein|lymphocyte antigen 117 20121230 -9606 7941 PLA2G7 - LDL-PLA2|LP-PLA2|PAFAD|PAFAH HGNC:9040|MIM:601690|Ensembl:ENSG00000146070|HPRD:03407|Vega:OTTHUMG00000014789 6 6p21.2-p12 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) protein-coding PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) O 1-alkyl-2-acetylglycerophosphocholine esterase|2-acetyl-1-alkylglycerophosphocholine esterase|LDL-PLA(2)|LDL-associated phospholipase A2|PAF 2-acylhydrolase|PAF acetylhydrolase|gVIIA-PLA2|group-VIIA phospholipase A2|lipoprotein-associated phospholipase A2|platelet-activating factor acetylhydrolase 20121230 -9606 7942 TFEB RP4-696P19.3 ALPHATFEB|BHLHE35|TCFEB HGNC:11753|MIM:600744|Ensembl:ENSG00000112561|HPRD:02847|Vega:OTTHUMG00000014684 6 6p21 transcription factor EB protein-coding TFEB transcription factor EB O T-cell transcription factor EB|class E basic helix-loop-helix protein 35 20121230 -9606 7944 CSCI - - MIM:122550 6 6p Corticosterone side-chain isomerase unknown - - - - 20100404 -9606 7945 PUJO - - MIM:143400 6 6p pelviureteric junction obstruction unknown - - - - 20120622 -9606 7948 PBCRA1 - CRAPB|PBCRA HGNC:8625|MIM:600790 6 6q14-q16.2 progressive bifocal chorioretinal atrophy 1 unknown PBCRA1 progressive bifocal chorioretinal atrophy 1 O - 20120622 -9606 7951 BKMA1 - - MIM:109780 6 6q21 Banded krait minor satellite DNA-1 unknown - - - - 20100404 -9606 7952 TNDM - DMTN|TNDM1 MIM:601410 6 - diabetes mellitus, transient neonatal other - - - - 20120622 -9606 7954 HPFH - FCP MIM:142470 6 6q22.3-q23.1 hereditary persistence of fetal hemoglobin, heterocellular unknown - - - - 20120622 -9606 7955 STL - - MIM:602532 6 6q22.33 six-twelve leukemia miscRNA - - - - 20121230 -9606 7956 NTT - - MIM:602154 6 6q23-q24 Noncoding transcript in T cells protein-coding - - - - 20100404 -9606 7957 EPM2A RP1-28C20.2 EPM2|MELF HGNC:3413|MIM:607566|Ensembl:ENSG00000112425|HPRD:06345|Vega:OTTHUMG00000015747 6 6q24 epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) protein-coding EPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) O LAFPTPase|epilepsy, progressive myoclonus type 2, Lafora disease (laforin)|lafora PTPase|laforin 20121230 -9606 7959 FEA - - MIM:137010 6 - F9 embryonic antigen other - - - - 20100404 -9606 7960 MRBC - - MIM:158050 6 - Monkey RBC receptor other - - - - 20100404 -9606 7962 PBCA - - MIM:600089 6 - Pancreatic beta cell, agenesis of unknown - - - - 20110215 -9606 7963 TS546 - - MIM:187330 6 - Temperature sensitivity complementation, cell cycle specific unknown - - - - 20110215 -9606 7965 AIMP2 PRO0992 JTV-1|JTV1|P38 HGNC:20609|MIM:600859|Ensembl:ENSG00000106305|HPRD:02915|Vega:OTTHUMG00000122077 7 7p22 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 protein-coding AIMP2 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 O ARS-interacting multi-functional protein 2|aminoacyl tRNA synthase complex-interacting multifunctional protein 2|multisynthase complex auxiliary component p38|multisynthetase complex auxiliary component p38|protein JTV-1 20121230 -9606 7971 GHS - - MIM:141400 - - Goldenhar syndrome unknown - - - - 20110215 -9606 7974 HRX - - MIM:145290 7 7q Hyperreflexia unknown - - - - 20110215 -9606 7975 MAFK - NFE2U|P18 HGNC:6782|MIM:600197|Ensembl:ENSG00000198517|HPRD:02561|Vega:OTTHUMG00000151453 7 7p22.3 v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian) protein-coding MAFK v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian) O basic-leucine zipper transcription factor MafK|erythroid transcription factor NF-E2 p18 subunit|nuclear factor erythroid-2, ubiquitous (p18)|transcription factor MafK|v-maf avian musculoaponeurotic fibrosarcoma oncogene family, protein K 20121230 -9606 7976 FZD3 - Fz-3 HGNC:4041|MIM:606143|Ensembl:ENSG00000104290|HPRD:05849|Vega:OTTHUMG00000102145 8 8p21 frizzled family receptor 3 protein-coding FZD3 frizzled family receptor 3 O frizzled 3, seven transmembrane spanning receptor|frizzled homolog 3|frizzled-3 20121230 -9606 7977 MHS3 - - MIM:154276 7 7q21-q22 Malignant hyperthermia susceptibility 3 unknown - - - - 20120622 -9606 7978 MTERF - - HGNC:21463|MIM:602318|Ensembl:ENSG00000127989|HPRD:08373|Vega:OTTHUMG00000156057 7 7q21-q22 mitochondrial transcription termination factor protein-coding MTERF mitochondrial transcription termination factor O mitochondrial transcription termination factor 1|transcription termination factor, mitochondrial 20121230 -9606 7979 SHFM1 - DSS1|ECD|SEM1|SHFD1|SHSF1|Shfdg1 HGNC:10845|MIM:183600|Ensembl:ENSG00000127922|HPRD:03182|Vega:OTTHUMG00000150680 7 7q21.3 split hand/foot malformation (ectrodactyly) type 1 protein-coding SHFM1 split hand/foot malformation (ectrodactyly) type 1 O 26S proteasome complex subunit DSS1|deleted in split hand/split foot protein 1|deleted in split-hand/split-foot 1|split hand/foot deleted protein 1|split hand/foot malformation type 1 protein 20121230 -9606 7980 TFPI2 - PP5|REF1|TFPI-2 HGNC:11761|MIM:600033|Ensembl:ENSG00000105825|HPRD:08962|Vega:OTTHUMG00000022963 7 7q22 tissue factor pathway inhibitor 2 protein-coding TFPI2 tissue factor pathway inhibitor 2 O placental protein 5|retinal pigment epithelium cell factor 1 20121230 -9606 7982 ST7 - ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 HGNC:11351|MIM:600833|Ensembl:ENSG00000004866|HPRD:09015|Vega:OTTHUMG00000023888 7 7q31.2 suppression of tumorigenicity 7 protein-coding ST7 suppression of tumorigenicity 7 O family with sequence similarity 4, subfamily A, member 1|suppression of tumorigenicity 7 (breast)|suppressor of tumorigenicity 7 protein 20121230 -9606 7984 ARHGEF5 - GEF5|P60|TIM|TIM1 HGNC:13209|MIM:600888|Ensembl:ENSG00000050327|HPRD:02932|Vega:OTTHUMG00000158004 7 7q35 Rho guanine nucleotide exchange factor (GEF) 5 protein-coding ARHGEF5 Rho guanine nucleotide exchange factor (GEF) 5 O ephexin-3|guanine nucleotide regulatory protein TIM|oncogene TIM|p60 TIM|rho guanine nucleotide exchange factor 5|transforming immortalized mammary oncogene 20121230 -9606 7986 GPDS1 - PDS1 HGNC:4457|MIM:600510 7 7q35-q36 glaucoma-related pigment dispersion syndrome 1 unknown GPDS1 glaucoma-related pigment dispersion syndrome 1 O - 20120622 -9606 7988 ZNF212 - C2H2-150|ZNF182|ZNFC150 HGNC:13004|MIM:602386|Ensembl:ENSG00000170260|HPRD:03859|Vega:OTTHUMG00000158968 7 7q36.1 zinc finger protein 212 protein-coding ZNF212 zinc finger protein 212 O Zinc finger protein C2H2-150 20121230 -9606 7990 CRS1C - - - 8 - Cryptidin-related sequence-1C unknown - - - - 20100404 -9606 7991 TUSC3 - D8S1992|M33|MRT22|MRT7|N33|OST3A HGNC:30242|MIM:601385|Ensembl:ENSG00000104723|HPRD:03228|Vega:OTTHUMG00000094803 8 8p22 tumor suppressor candidate 3 protein-coding TUSC3 tumor suppressor candidate 3 O Putative prostate cancer tumor suppressor|magnesium uptake/transporter TUSC3|oligosaccharyltransferase 3 homolog A 20121230 -9606 7993 UBXN8 - D8S2298E|REP8|UBXD6 HGNC:30307|MIM:602155|HPRD:03692 8 8p12-p11.2 UBX domain protein 8 protein-coding UBXN8 UBX domain protein 8 O Reproduction/chromosome 8|UBX domain containing 6|UBX domain-containing protein 6|UBX domain-containing protein 8|rep-8 protein|reproduction 8 protein 20121230 -9606 7994 KAT6A - MOZ|MYST3|RUNXBP2|ZNF220 HGNC:13013|MIM:601408|Ensembl:ENSG00000083168|HPRD:03244|Vega:OTTHUMG00000150453 8 8p11 K(lysine) acetyltransferase 6A protein-coding KAT6A K(lysine) acetyltransferase 6A O MOZ, YBF2/SAS3, SAS2 and TIP60 protein 3|MYST histone acetyltransferase (monocytic leukemia) 3|MYST-3|Monocytic leukemia zinc finger protein|histone acetyltransferase KAT6A|histone acetyltransferase MYST3|runt-related transcription factor binding protein 2|runt-related transcription factor-binding protein 2|zinc finger protein 220 20121230 -9606 8000 PSCA UNQ206/PRO232 PRO232 HGNC:9500|MIM:602470|Ensembl:ENSG00000167653|HPRD:03919|Vega:OTTHUMG00000162077 8 8q24.2 prostate stem cell antigen protein-coding PSCA prostate stem cell antigen O - 20121230 -9606 8001 GLRA3 - - HGNC:4328|MIM:600421|Ensembl:ENSG00000145451|HPRD:02688|Vega:OTTHUMG00000149816 4 4q34.1 glycine receptor, alpha 3 protein-coding GLRA3 glycine receptor, alpha 3 O glycine receptor alpha 3 subunit|glycine receptor subunit alpha-3|glycine receptor, alpha-3 polypeptide|ligand gated ion channel 20121230 -9606 8009 LALL - - MIM:247640 9 9p22-p21 Lymphomatous acute lymphoblastic leukemia unknown - - - - 20120622 -9606 8011 MROS - MRS HGNC:14595|MIM:155900 9 9p11 Melkersson-Rosenthal syndrome unknown MROS Melkersson-Rosenthal syndrome O - 20110215 -9606 8013 NR4A3 RP11-60I3.3 CHN|CSMF|MINOR|NOR1|TEC HGNC:7982|MIM:600542|Ensembl:ENSG00000119508|HPRD:02766|Vega:OTTHUMG00000021030 9 9q22 nuclear receptor subfamily 4, group A, member 3 protein-coding NR4A3 nuclear receptor subfamily 4, group A, member 3 O chondrosarcoma, extraskeletal myxoid, fused to EWS|mitogen-induced nuclear orphan receptor|neuron-derived orphan receptor 1|nuclear hormone receptor NOR-1|nuclear receptor subfamily 4 group A member 3|translocated in extraskeletal chondrosarcoma 20121230 -9606 8019 BRD3 RP11-374P20.3 ORFX|RING3L HGNC:1104|MIM:601541|Ensembl:ENSG00000169925|HPRD:03327|Vega:OTTHUMG00000021004 9 9q34 bromodomain containing 3 protein-coding BRD3 bromodomain containing 3 O RING3-like protein|bromodomain-containing 3|bromodomain-containing protein 3 20121230 -9606 8021 NUP214 RP11-544A12.7 CAIN|CAN|D9S46E|N214 HGNC:8064|MIM:114350|Ensembl:ENSG00000126883|HPRD:00258|Vega:OTTHUMG00000020816 9 9q34.1 nucleoporin 214kDa protein-coding NUP214 nucleoporin 214kDa O 214 kDa nucleoporin|CAN protein, putative oncogene|nuclear pore complex protein Nup214|nucleoporin 214kD (CAIN)|nucleoporin Nup214|p250 20121230 -9606 8022 LHX3 - CPHD3|LIM3|M2-LHX3 HGNC:6595|MIM:600577|Ensembl:ENSG00000107187|HPRD:02783|Vega:OTTHUMG00000020924 9 9q34.3 LIM homeobox 3 protein-coding LHX3 LIM homeobox 3 O LIM homeobox protein 3|LIM/homeobox protein Lhx3|LIM/homeodomain protein LHX3 20121230 -9606 8023 H142T - - MIM:187290 9 - Temperature sensitivity complementation, H142 unknown - - - - 20120906 -9606 8024 RDPA - - MIM:600964 10 10pter-p11.2 refsum disease, adult, with increased pipecolicacidemia unknown - - - - 20120622 -9606 8026 DGS2 - DGCR2 MIM:601362 10 10p14-p13 DiGeorge syndrome/velocardiofacial syndrome complex 2 unknown - - - - 20120719 -9606 8027 STAM - STAM-1|STAM1 HGNC:11357|MIM:601899|Ensembl:ENSG00000136738|HPRD:03542|Vega:OTTHUMG00000017749 10 10p14-p13 signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 protein-coding STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 O HSE1 homolog|signal transducing adapter molecule 1 20121230 -9606 8028 MLLT10 RP11-399C16.2 AF10 HGNC:16063|MIM:602409|Ensembl:ENSG00000078403|HPRD:03874|Vega:OTTHUMG00000017799 10 10p12 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 protein-coding MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 O ALL1-fused gene from chromosome 10 protein|protein AF-10|type I AF10 protein|type III AF10 protein|type IV AF10 protein 20121230 -9606 8029 CUBN RP11-416D8.1 IFCR|MGA1|gp280 HGNC:2548|MIM:602997|Ensembl:ENSG00000107611|HPRD:04296|Vega:OTTHUMG00000017741 10 10p12.31 cubilin (intrinsic factor-cobalamin receptor) protein-coding CUBN cubilin (intrinsic factor-cobalamin receptor) O 460 kDa receptor|cubilin|cubilin precursor variant 1|cubilin precursor variant 2|intestinal intrinsic factor receptor|intrinsic factor-vitamin B12 receptor 20121230 -9606 8030 CCDC6 - D10S170|H4|PTC|TPC|TST1 HGNC:18782|MIM:601985|Ensembl:ENSG00000108091|HPRD:09064|Vega:OTTHUMG00000018284 10 10q21 coiled-coil domain containing 6 protein-coding CCDC6 coiled-coil domain containing 6 O coiled-coil domain-containing protein 6|papillary thyroid carcinoma-encoded protein 20121230 -9606 8031 NCOA4 RP11-481A12.4 ARA70|ELE1|PTC3|RFG HGNC:7671|MIM:601984|Ensembl:ENSG00000138293|HPRD:03584|Vega:OTTHUMG00000018217 10 10q11.2 nuclear receptor coactivator 4 protein-coding NCOA4 nuclear receptor coactivator 4 O 70 kDa AR-activator|70 kDa androgen receptor coactivator|NCoA-4|RET-activating gene ELE1|androgen receptor-associated protein of 70 kDa|ret fused 20121230 -9606 8034 SLC25A16 RP11-524O24.4 D10S105E|GDA|GDC|HGT.1|ML7|hML7 HGNC:10986|MIM:139080|Ensembl:ENSG00000122912|HPRD:00740|Vega:OTTHUMG00000018354 10 10q21.3 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 protein-coding SLC25A16 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 O graves disease autoantigen|graves disease carrier protein|mitochondrial solute carrier protein homolog|solute carrier family 25 member 16 20121230 -9606 8036 SHOC2 RP11-348N5.2 SIAA0862|SOC2|SUR8 HGNC:15454|MIM:602775|Ensembl:ENSG00000108061|HPRD:04144|Vega:OTTHUMG00000019047 10 10q25 soc-2 suppressor of clear homolog (C. elegans) protein-coding SHOC2 soc-2 suppressor of clear homolog (C. elegans) O leucine-rich repeat protein SHOC-2 20121230 -9606 8038 ADAM12 RP11-295J3.5 MCMP|MCMPMltna|MLTN|MLTNA HGNC:190|MIM:602714|Ensembl:ENSG00000148848|HPRD:04092|Vega:OTTHUMG00000019243 10 10q26.3 ADAM metallopeptidase domain 12 protein-coding ADAM12 ADAM metallopeptidase domain 12 O disintegrin and metalloproteinase domain-containing protein 12|meltrin-alpha 20121230 -9606 8039 PROA - - MIM:176770 - - Proline(-) auxotroph, complementation of unknown - - - - 20120906 -9606 8041 TP250 - - MIM:186710 11 11pter-p11.2 T-cell activation antigen p250 unknown - - - - 20100404 -9606 8045 RASSF7 - C11orf13|HRAS1|HRC1 HGNC:1166|MIM:143023|Ensembl:ENSG00000099849|HPRD:00878|Vega:OTTHUMG00000132004 11 11p15.5 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 protein-coding RASSF7 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 O HRAS1-related cluster protein 1|HRAS1-related cluster-1|Ras association (RalGDS/AF-6) domain family 7|ras association domain-containing protein 7 20121230 -9606 8048 CSRP3 - CLP|CMD1M|CMH12|CRP3|LMO4|MLP HGNC:2472|MIM:600824|Ensembl:ENSG00000129170|HPRD:07525|Vega:OTTHUMG00000166100 11 11p15.1 cysteine and glycine-rich protein 3 (cardiac LIM protein) protein-coding CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein) O LIM domain only 4|cardiac LIM domain protein|cysteine and glycine-rich protein 3|muscle LIM protein 20121230 -9606 8050 PDHX - DLDBP|E3BP|OPDX|PDX1|proX HGNC:21350|MIM:608769|Ensembl:ENSG00000110435|HPRD:02002|Vega:OTTHUMG00000166491 11 11p13 pyruvate dehydrogenase complex, component X protein-coding PDHX pyruvate dehydrogenase complex, component X O dihydrolipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex|lipoyl-containing pyruvate dehydrogenase complex component X|pyruvate dehydrogenase complex, E3-binding protein subunit|pyruvate dehydrogenase complex, lipoyl-containing component X|pyruvate dehydrogenase protein X component, mitochondrial 20121230 -9606 8056 ECB2 - FBP MIM:263400 11 11q23 erythrocytosis, autosomal recessive benign 2 unknown - - - - 20110714 -9606 8060 FNL2 - - MIM:135610 11 11q12.1-q13.5 Fibronectin-like-2 unknown - - - - 20100404 -9606 8061 FOSL1 - FRA|FRA1|fra-1 HGNC:13718|MIM:136515|Ensembl:ENSG00000175592|HPRD:00643|Vega:OTTHUMG00000166715 11 11q13 FOS-like antigen 1 protein-coding FOSL1 FOS-like antigen 1 O FOS-like antigen-1|fos-related antigen 1 20121230 -9606 8065 CUL5 - VACM-1|VACM1 HGNC:2556|MIM:601741|Ensembl:ENSG00000166266|HPRD:03444|Vega:OTTHUMG00000166369 11 11q22.3 cullin 5 protein-coding CUL5 cullin 5 O CUL-5|Cullin-5 (vasopressin-activated calcium-mobilizing receptor-1)|Vasopressin-activated calcium-mobilizing receptor-1|cullin-5|vasopressin-activated calcium-mobilizing receptor 1 20121230 -9606 8066 ANC - - MIM:105580 11 11q22-qter Anal canal carcinoma unknown - - - - 20110215 -9606 8068 BRCATA - - MIM:600048 11 11q23 Breast cancer, 11;22 translocation associated unknown - - - - 20120622 -9606 8073 PTP4A2 BM-008 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b HGNC:9635|MIM:601584|Ensembl:ENSG00000184007|HPRD:03348 1 1p35 protein tyrosine phosphatase type IVA, member 2 protein-coding PTP4A2 protein tyrosine phosphatase type IVA, member 2 O PTP(CAAXII)|phosphatase of regenerating liver 2|protein tyrosine phosphatase IVA|protein tyrosine phosphatase IVA2|protein tyrosine phosphatase type IVA 2|protein-tyrosine phosphatase 4a2|protein-tyrosine phosphatase of regenerating liver 2 20121230 -9606 8074 FGF23 UNQ3027/PRO9828 ADHR|HPDR2|HYPF|PHPTC HGNC:3680|MIM:605380|Ensembl:ENSG00000118972|HPRD:05648|Vega:OTTHUMG00000168241 12 12p13.3 fibroblast growth factor 23 protein-coding FGF23 fibroblast growth factor 23 O FGF-23|phosphatonin|tumor-derived hypophosphatemia inducing factor|tumor-derived hypophosphatemia-inducing factor 20121230 -9606 8075 PCS - - MIM:168710 12 12p13.2 Parotid proline-rich salivary protein Pc unknown - - - - 20100404 -9606 8076 MFAP5 - MAGP2|MP25 HGNC:29673|MIM:601103|Ensembl:ENSG00000197614|HPRD:03063|Vega:OTTHUMG00000168703 12 12p13.1-p12.3 microfibrillar associated protein 5 protein-coding MFAP5 microfibrillar associated protein 5 O MAGP-2|MFAP-5|microfibril-associated glycoprotein 2|microfibril-associated glycoprotein-2|microfibrillar-associated protein 5 20121230 -9606 8078 USP5 - ISOT HGNC:12628|MIM:601447|Ensembl:ENSG00000111667|HPRD:03265|Vega:OTTHUMG00000169233 12 12p13 ubiquitin specific peptidase 5 (isopeptidase T) protein-coding USP5 ubiquitin specific peptidase 5 (isopeptidase T) O deubiquitinating enzyme 5|isopeptidase T|ubiquitin carboxyl-terminal hydrolase 5|ubiquitin isopeptidase T|ubiquitin specific protease 5 (isopeptidase T)|ubiquitin thioesterase 5|ubiquitin thiolesterase 5|ubiquitin-specific protease-5 (ubiquitin isopeptidase T)|ubiquitin-specific-processing protease 5 20121230 -9606 8079 MLF2 - NTN4 HGNC:7126|MIM:601401|Ensembl:ENSG00000089693|HPRD:03238|Vega:OTTHUMG00000168717 12 12p13 myeloid leukemia factor 2 protein-coding MLF2 myeloid leukemia factor 2 O myelodysplasia-myeloid leukemia factor 2 20121230 -9606 8080 HTNB - - MIM:112410 12 12p12.2-p11.2 hypertension with brachydactyly unknown - - - - 20120622 -9606 8081 AD5 - - HGNC:185|MIM:602096 12 12p11.23-q13.12 Alzheimer disease 5 unknown AD5 Alzheimer disease 5 O - 20120622 -9606 8082 SSPN - DAGA5|KRAG|NSPN|SPN1|SPN2 HGNC:11322|MIM:601599|Ensembl:ENSG00000123096|HPRD:03359|Vega:OTTHUMG00000169167 12 12p11.2 sarcospan protein-coding SSPN sarcospan O K-ras oncogene-associated protein|Kras oncogene-associated|kirsten-ras-associated protein|microspan|nanospan|sarcospan (Kras oncogene-associated gene) 20121230 -9606 8083 KAR - - MIM:107920 12 12p Aromatic alpha-keto acid reductase unknown - - - - 20100404 -9606 8084 PPKB - - MIM:600231 12 12q11-q13 palmoplantar keratoderma, Bothnia type unknown - - - - 20120622 -9606 8085 MLL2 - AAD10|ALR|CAGL114|KABUK1|KMS|KMT2D|MLL4|TNRC21 HGNC:7133|MIM:602113|Ensembl:ENSG00000167548|HPRD:03664|Vega:OTTHUMG00000166524 12 12q13.12 myeloid/lymphoid or mixed-lineage leukemia 2 protein-coding MLL2 myeloid/lymphoid or mixed-lineage leukemia 2 O ALL1-related protein|Kabuki make-up syndrome|Kabuki mental retardation syndrome|histone-lysine N-methyltransferase MLL2|lysine N-methyltransferase 2D|trinucleotide repeat containing 21 20121230 -9606 8086 AAAS GL003 AAA|AAASb|ADRACALA|ADRACALIN|ALADIN HGNC:13666|MIM:605378|Ensembl:ENSG00000094914|HPRD:05646|Vega:OTTHUMG00000169729 12 12q13 achalasia, adrenocortical insufficiency, alacrimia protein-coding AAAS achalasia, adrenocortical insufficiency, alacrimia O Allgrove, triple-A|aladin 20121230 -9606 8087 FXR1 - FXR1P HGNC:4023|MIM:600819|Ensembl:ENSG00000114416|HPRD:02892|Vega:OTTHUMG00000158138 3 3q28 fragile X mental retardation, autosomal homolog 1 protein-coding FXR1 fragile X mental retardation, autosomal homolog 1 O fragile X mental retardation syndrome-related protein 1|hFXR1p 20121230 -9606 8089 YEATS4 - 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 HGNC:24859|MIM:602116|Ensembl:ENSG00000127337|HPRD:03666|Vega:OTTHUMG00000169358 12 12q13-q15 YEATS domain containing 4 protein-coding YEATS4 YEATS domain containing 4 O NuMA binding protein 1|YEATS domain-containing protein 4|glioma-amplified sequence 41|glioma-amplified sequence-41|nuBI1|nuMA-binding protein 1 20121230 -9606 8090 SPPM - SPMD MIM:181430 12 - scapuloperoneal syndrome, myopathic type unknown - - - - 20120622 -9606 8091 HMGA2 - BABL|HMGI-C|HMGIC|LIPO|STQTL9 HGNC:5009|MIM:600698|Ensembl:ENSG00000149948|HPRD:02827|Vega:OTTHUMG00000168936 12 12q15 high mobility group AT-hook 2 protein-coding HMGA2 high mobility group AT-hook 2 O High-mobility group protein HMGI-C|high mobility group AT-hook protein 2|high mobility group protein HMGI-C|high-mobility group (nonhistone chromosomal) protein isoform I-C 20121230 -9606 8092 ALX1 - CART1|FND3 HGNC:1494|MIM:601527|Ensembl:ENSG00000180318|HPRD:03316|Vega:OTTHUMG00000169820 12 12q21.31 ALX homeobox 1 protein-coding ALX1 ALX homeobox 1 O ALX homeobox protein 1|CART-1|cartilage paired-class homeoprotein 1 20121230 -9606 8093 MGCT - - MIM:273300 12 12q22 male germ cell tumor unknown - - - - 20120622 -9606 8094 SMAL - - MIM:600175 - - spinal muscular atrophy, congenital nonprogressive, of lower limbs unknown - - - - 20121123 -9606 8099 CDK2AP1 - DOC1|DORC1|ST19|doc-1|p12DOC-1 HGNC:14002|MIM:602198|Ensembl:ENSG00000111328|HPRD:03726|Vega:OTTHUMG00000168854 12 12q24.31 cyclin-dependent kinase 2 associated protein 1 protein-coding CDK2AP1 cyclin-dependent kinase 2 associated protein 1 O CDK2-associated protein 1|Deleted in oral cancer-1|cyclin-dependent kinase 2-associated protein 1|deleted in oral cancer 1|putative oral cancer suppressor 20121230 -9606 8100 IFT88 RP11-172H24.2 D13S1056E|DAF19|TG737|TTC10|hTg737 HGNC:20606|MIM:600595|Ensembl:ENSG00000032742|HPRD:09000|Vega:OTTHUMG00000016517 13 13q12.1 intraflagellar transport 88 homolog (Chlamydomonas) protein-coding IFT88 intraflagellar transport 88 homolog (Chlamydomonas) O TPR repeat protein 10|intraflagellar transport protein 88 homolog|polaris homolog|probe hTg737 (polycystic kidney disease, autosomal recessive)|recessive polycystic kidney disease protein Tg737 homolog|tetratricopeptide repeat domain 10|tetratricopeptide repeat protein 10 20121230 -9606 8101 D13S25 - DBM MIM:109543 13 13q14 Disrupted in B-cell neoplasia unknown - - - - 20120622 -9606 8102 XRS - - MIM:194370 13 13q14 X-ray sensitivity unknown - - - - 20110215 -9606 8103 PAPA2 - - MIM:602085 13 13q21-q32 postaxial polydactyly, type A2 unknown - - - - 20120622 -9606 8104 MCOR - - MIM:156600 13 13q31-q32 microcoria, congenital unknown - - - - 20120622 -9606 8105 BRCD1 - BCDS1 MIM:114450 - - cancer, familial, with in vitro radioresistance unknown - - - - 20120622 -9606 8106 PABPN1 - OPMD|PAB2|PABII|PABP-2|PABP2 HGNC:8565|MIM:602279|Ensembl:ENSG00000100836|HPRD:03787|Vega:OTTHUMG00000028739 14 14q11.2 poly(A) binding protein, nuclear 1 protein-coding PABPN1 poly(A) binding protein, nuclear 1 O poly(A) binding protein 2|poly(A) binding protein II|polyadenylate-binding protein 2 20121230 -9606 8110 DPF3 - CERD4 HGNC:17427|MIM:601672|Ensembl:ENSG00000205683|HPRD:03395|Vega:OTTHUMG00000171364 14 14q24.2 D4, zinc and double PHD fingers, family 3 protein-coding DPF3 D4, zinc and double PHD fingers, family 3 O 2810403B03Rik|BAF45C|BRG1-associated factor 45C|cer-d4 homolog|zinc finger protein DPF3|zinc finger protein cer-d4 20121230 -9606 8111 GPR68 - GPR12A|OGR1 HGNC:4519|MIM:601404|Ensembl:ENSG00000119714|HPRD:03241|Vega:OTTHUMG00000167590 14 14q31 G protein-coupled receptor 68 protein-coding GPR68 G protein-coupled receptor 68 O G-protein coupled receptor 68|ovarian cancer G protein-coupled receptor, 1|ovarian cancer G-protein coupled receptor 1|sphingosylphosphorylcholine receptor 20121230 -9606 8113 MCOP - MCOP1 MIM:251600 14 14q32 microphthalmia, autosomal recessive unknown - - - - 20120622 -9606 8114 IV - SIV HGNC:6185|MIM:270100 14 14q32 inversus situs, viscerum unknown IV inversus situs, viscerum O - 20110714 -9606 8115 TCL1A - TCL1 HGNC:11648|MIM:186960|Ensembl:ENSG00000100721|HPRD:01744|Vega:OTTHUMG00000171390 14 14q32.1 T-cell leukemia/lymphoma 1A protein-coding TCL1A T-cell leukemia/lymphoma 1A O T-cell leukemia/lymphoma protein 1A|T-cell lymphoma-1|oncogene TCL-1|oncogene TCL1|protein p14 TCL1 20121230 -9606 8118 LCH - - MIM:151020 14 - Lentil agglutinin-binding unknown - - - - 20100404 -9606 8120 AP3B2 - NAPTB HGNC:567|MIM:602166|Ensembl:ENSG00000103723|HPRD:03699|Vega:OTTHUMG00000168009 15 15q adaptor-related protein complex 3, beta 2 subunit protein-coding AP3B2 adaptor-related protein complex 3, beta 2 subunit O AP-3 complex subunit beta-2|Neuronal adaptin-like protein, beta-subunit|adapter-related protein complex 3 subunit beta-2|adaptor protein complex AP-3 subunit beta-2|beta-3B-adaptin|clathrin assembly protein complex 3 beta-2 large chain|neuron-specific vesicle coat protein beta-NAP 20121230 -9606 8123 PAR5 - D15S226E MIM:600162 15 15q11-q13 Prader-Willi/Angelman syndrome-5 miscRNA - - - - 20121230 -9606 8125 ANP32A - C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 HGNC:13233|MIM:600832|Ensembl:ENSG00000140350|HPRD:09014|Vega:OTTHUMG00000154502 15 15q23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A protein-coding ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A O acidic leucine-rich nuclear phosphoprotein 32 family member A|acidic nuclear phosphoprotein pp32|cerebellar leucine rich acidic nuclear protein|hepatopoietin Cn|inhibitor-1 of protein phosphatase-2A|leucine-rich acidic nuclear protein|mapmodulin|potent heat-stable protein phosphatase 2A inhibitor I1PP2A|putative HLA-DR-associated protein I|putative human HLA class II associated protein I 20121230 -9606 8126 MRST - - MIM:602685 15 15q24 Mental retardation, severe, with spasticity and tapetoretinal unknown - - - - 20120622 -9606 8128 ST8SIA2 UNQ3057 HsT19690|SIAT8B|ST8SIA-II|STX HGNC:10870|MIM:602546|Ensembl:ENSG00000140557|HPRD:03969|Vega:OTTHUMG00000149843 15 15q26 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 O SIAT8-B|ST8SiaII|alpha-2,8-sialyltransferase 8B|alpha-2,8-sialyltransferase 8B 1|sialyltransferase 8 (alpha-2, 8-sialytransferase) B|sialyltransferase 8B|sialyltransferase X|sialytransferase St8Sia II 20121230 -9606 8129 HBHR - ATR1 MIM:141750 16 16pter-p13.3 alpha-thalassemia/mental retardation syndrome, type 1 unknown - - - - 20120622 -9606 8130 CATM - MCOPCT1 MIM:156850 16 16p13.3 cataract, congenital, with microphthalmia unknown - - - - 20120622 -9606 8131 NPRL3 Z69666.1-003 C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11 HGNC:14124|MIM:600928|Ensembl:ENSG00000103148|HPRD:11866 16 16p13.3 nitrogen permease regulator-like 3 (S. cerevisiae) protein-coding NPRL3 nitrogen permease regulator-like 3 (S. cerevisiae) O -14 gene protein|alpha-globin regulatory element-containing gene protein|conserved gene telomeric to alpha globin cluster|nitrogen permease regulator 3-like protein 20121230 -9606 8132 PKDTS - - MIM:600273 16 16p13.3 polycystic kidney disease, infantile severe, with tuberous sclerosis unknown - - - - 20120622 -9606 8136 WT3 - - MIM:194090 16 16q Wilms tumor-3 unknown - - - - 20120622 -9606 8137 HYD2 - - HGNC:13822|MIM:602639 16 16q12.1 hypodontia, autosomal recessive (2) unknown HYD2 hypodontia, autosomal recessive (2) O - 20120622 -9606 8139 GAN - GAN1|KLHL16 HGNC:4137|MIM:605379|Ensembl:ENSG00000127688|HPRD:05647|Vega:OTTHUMG00000137627 16 16q24.1 gigaxonin protein-coding GAN gigaxonin O kelch-like protein 16 20121230 -9606 8140 SLC7A5 - 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 HGNC:11063|MIM:600182|Ensembl:ENSG00000103257|HPRD:02552|Vega:OTTHUMG00000137658 16 16q24.3 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding SLC7A5 solute carrier family 7 (amino acid transporter light chain, L system), member 5 O 4F2 LC|4F2 light chain|CD98 light chain|L-type amino acid transporter 1|integral membrane protein E16|large neutral amino acids transporter 1|large neutral amino acids transporter small subunit 1|sodium-independent neutral amino acid transporter LAT1|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5|solute carrier family 7 member 5|y+ system cationic amino acid transporter 20121230 -9606 8142 BCPR - - MIM:113721 17 17p13.3 Breast cancer-related regulator of TP53 unknown - - - - 20120622 -9606 8144 FIMG1 - CMS1A1|FIM1|FIMG|MGI MIM:605809 17 17p13 myasthenia gravis, familial infantile, 1 unknown - - - - 20120622 -9606 8148 TAF15 - Npl3|RBP56|TAF2N|TAFII68 HGNC:11547|MIM:601574|Ensembl:ENSG00000172660|HPRD:09031|Vega:OTTHUMG00000179973 17 17q11.1-q11.2 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa protein-coding TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa O RBP56/CSMF fusion|TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA-binding protein 56)|TATA box-binding protein-associated factor 2N (RNA-binding protein 56)|TATA-binding protein-associated factor 2N|TBP-associated factor 15 20121230 -9606 8151 WT4 - FWT1 MIM:601363 17 17q12-q21 Wilms tumor-4 unknown - - - - 20120622 -9606 8153 RND2 - ARHN|RHO7|RhoN HGNC:18315|MIM:601555|Ensembl:ENSG00000108830|HPRD:03332|Vega:OTTHUMG00000180817 17 17q21 Rho family GTPase 2 protein-coding RND2 Rho family GTPase 2 O GTP-binding protein Rho7|ras homolog gene family, member N|rho-related GTP-binding protein Rho7|rho-related GTP-binding protein RhoN 20121230 -9606 8156 GPSC - - MIM:221820 17 17q21-q22 gliosis, familial progressive subcortical unknown - - - - 20120622 -9606 8160 MVWF - - - 17 - Modifier of von Willebrand factor unknown - - - - 20100404 -9606 8161 COIL - CLN80|p80-coilin HGNC:2184|MIM:600272|Ensembl:ENSG00000121058|HPRD:02605|Vega:OTTHUMG00000178126 17 17q22 coilin protein-coding COIL coilin O coilin p80|p80 20121230 -9606 8163 CDR3 - - MIM:602197 17 17q25 Cerebellar degeneration-related autoantigen-3 other - - - - 20100404 -9606 8165 AKAP1 - AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84 HGNC:367|MIM:602449|Ensembl:ENSG00000121057|HPRD:03905|Vega:OTTHUMG00000140369 17 17q22 A kinase (PRKA) anchor protein 1 protein-coding AKAP1 A kinase (PRKA) anchor protein 1 O A-kinase anchor protein 1, mitochondrial|A-kinase anchor protein 149 kDa|AKAP 149|D-AKAP-1|dual-specificity A-kinase anchoring protein 1|protein kinase A anchoring protein 1|protein kinase A1|protein phosphatase 1, regulatory subunit 43|spermatid A-kinase anchor protein 84 20121230 -9606 8168 TW - - - 18 - Twirler mouse mutation, human homolog of unknown - - - - 20110215 -9606 8170 SLC14A2 - HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 HGNC:10919|MIM:601611|Ensembl:ENSG00000132874|HPRD:03366|Vega:OTTHUMG00000132616 18 18q12.1-q21.1 solute carrier family 14 (urea transporter), member 2 protein-coding SLC14A2 solute carrier family 14 (urea transporter), member 2 O solute carrier family 14 member 2|urea transporter 2|urea transporter, kidney|urea transporter-2 20121230 -9606 8173 CNSN - - MIM:212200 18 18q21.3 Carnosinemia (carnosinase) unknown - - - - 20120622 -9606 8174 MADCAM1 - MACAM1 HGNC:6765|MIM:102670|Ensembl:ENSG00000099866|HPRD:00035|Vega:OTTHUMG00000180548 19 19p13.3 mucosal vascular addressin cell adhesion molecule 1 protein-coding MADCAM1 mucosal vascular addressin cell adhesion molecule 1 O MAdCAM-1|hMAdCAM-1|mucosal addressin cell adhesion molecule 1|mucosal addressin cell adhesion molecule-1 20121230 -9606 8175 SF3A2 - PRP11|PRPF11|SAP62|SF3a66 HGNC:10766|MIM:600796|Ensembl:ENSG00000104897|HPRD:02877|Vega:OTTHUMG00000180414 19 19p13.3 splicing factor 3a, subunit 2, 66kDa protein-coding SF3A2 splicing factor 3a, subunit 2, 66kDa O SAP 62|pre-mRNA splicing factor SF3A, subunit 2|spliceosome associated protein 62|spliceosome-associated protein 62|splicing factor 3A subunit 2 20121230 -9606 8177 LPSA - D19S381E MIM:164953 19 19p13.2-q13.3 Oncogene liposarcoma (DNA segment, single copy, expressed, probes unknown - - - - 20120622 -9606 8178 ELL - C19orf17|ELL1|MEN|PPP1R68 HGNC:23114|MIM:600284|Ensembl:ENSG00000105656|HPRD:02615 19 19p13.1 elongation factor RNA polymerase II protein-coding ELL elongation factor RNA polymerase II O ELL gene (11-19 lysine-rich leukemia gene)|RNA polymerase II elongation factor ELL|eleven-nineteen lysine-rich leukemia protein|protein phosphatase 1, regulatory subunit 68 20121230 -9606 8181 BFIC - BFIC1 MIM:601764 19 19q benign familial infantile convulsions unknown - - - - 20120622 -9606 8184 HBN1 - HB1|PFHB1|PFHB1B MIM:604559 - - Progressive familial heart block, type I, locus 1 unknown - - - - 20120622 -9606 8187 ZNF239 - HOK-2|MOK2 HGNC:13031|MIM:601069|Ensembl:ENSG00000196793|HPRD:03044|Vega:OTTHUMG00000018033 10 10q11.22-q11.23 zinc finger protein 239 protein-coding ZNF239 zinc finger protein 239 O zinc finger protein (C2H2) homologous to mouse MOK-2|zinc finger protein HOK-2|zinc finger protein MOK-2 20121230 -9606 8188 NGFG - - MIM:162040 19 19q13.3 Nerve growth factor, gamma subunit unknown - - - - 20110215 -9606 8189 SYMPK hCG_20812 SPK|SYM HGNC:22935|MIM:602388|Ensembl:ENSG00000125755|HPRD:09090|Vega:OTTHUMG00000150151 19 19q13.3 symplekin protein-coding SYMPK symplekin O - 20121230 -9606 8190 MIA - CD-RAP HGNC:7076|MIM:601340|Ensembl:ENSG00000261857|HPRD:03216 19 19q13.2 melanoma inhibitory activity protein-coding MIA melanoma inhibitory activity O melanoma-derived growth regulatory protein 20121230 -9606 8192 CLPP - - HGNC:2084|MIM:601119|Ensembl:ENSG00000125656|HPRD:03074 19 19p13.3 ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli) protein-coding CLPP ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli) O ATP-dependent protease ClpAP, proteolytic subunit, human|ClpP caseinolytic peptidase ATP-dependent, proteolytic subunit|ClpP caseinolytic protease, ATP-dependent, proteolytic subunit homolog|endopeptidase Clp|putative ATP-dependent Clp protease proteolytic subunit, mitochondrial 20121230 -9606 8193 DPF1 - BAF45b|NEUD4|neuro-d4 HGNC:20225|MIM:601670|Ensembl:ENSG00000011332|HPRD:03393|Vega:OTTHUMG00000157164 19 19q13.2 D4, zinc and double PHD fingers family 1 protein-coding DPF1 D4, zinc and double PHD fingers family 1 O BRG1-associated factor 45B|neuro-d4 homolog|zinc finger protein neuro-d4 20121230 -9606 8195 MKKS - BBS6|HMCS|KMS|MKS HGNC:7108|MIM:604896|Ensembl:ENSG00000125863|HPRD:05356|Vega:OTTHUMG00000031868 20 20p12 McKusick-Kaufman syndrome protein-coding MKKS McKusick-Kaufman syndrome O McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin|bardet-Biedl syndrome 6 protein 20121230 -9606 8197 CHED1 - CHED|CHED2 HGNC:1923|MIM:121700 20 20p11.2-q11.2 corneal endothelial dystrophy 1 (autosomal dominant) unknown CHED1 corneal endothelial dystrophy 1 (autosomal dominant) O - 20120622 -9606 8200 GDF5 - BMP14|CDMP1|LAP4|OS5|SYNS2 HGNC:4220|MIM:601146|Ensembl:ENSG00000125965|HPRD:03092|Vega:OTTHUMG00000032341 20 20q11.2 growth differentiation factor 5 protein-coding GDF5 growth differentiation factor 5 O CDMP-1|GDF-5|cartilage-derived morphogenetic protein-1|growth/differentiation factor 5|radotermin 20121230 -9606 8201 MLRG - MTS MIM:601308 20 20q11.2-q12 Myeloid leukemia-related gene (myeloid tumor suppressor) unknown - - - - 20110215 -9606 8202 NCOA3 RP5-1049G16.3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP HGNC:7670|MIM:601937|Ensembl:ENSG00000124151|HPRD:03570|Vega:OTTHUMG00000033061 20 20q12 nuclear receptor coactivator 3 protein-coding NCOA3 nuclear receptor coactivator 3 O CBP-interacting protein|amplified in breast cancer 1 protein|class E basic helix-loop-helix protein 42|receptor-associated coactivator 3|steroid receptor coactivator protein 3|thyroid hormone receptor activator molecule 1 20121230 -9606 8204 NRIP1 - RIP140 HGNC:8001|MIM:602490|Ensembl:ENSG00000180530|HPRD:03927|Vega:OTTHUMG00000074323 21 21q11.2 nuclear receptor interacting protein 1 protein-coding NRIP1 nuclear receptor interacting protein 1 O nuclear factor RIP140|nuclear receptor-interacting protein 1|receptor interacting protein 140|receptor-interacting protein 140 20121230 -9606 8205 TAM - MST MIM:159595 21 21q11.2 Myeloproliferative syndrome, transient (transient abnormal unknown - - - - 20120622 -9606 8208 CHAF1B - CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7 HGNC:1911|MIM:601245|Ensembl:ENSG00000159259|HPRD:03147|Vega:OTTHUMG00000086606 21 21q22.13 chromatin assembly factor 1, subunit B (p60) protein-coding CHAF1B chromatin assembly factor 1, subunit B (p60) O CAF-1 subunit B|CAF-I 60 kDa subunit|CAF-I p60|M-phase phosphoprotein 7|chromatin assembly factor 1 subunit B|chromatin assembly factor I p60 subunit|human chromatin assembly factor-I p60 subunit 20121230 -9606 8209 C21orf33 - ES1|GT335|HES1|KNPH|KNPI HGNC:1273|MIM:601659|Ensembl:ENSG00000160221|HPRD:09044|Vega:OTTHUMG00000086916 21 21q22.3 chromosome 21 open reading frame 33 protein-coding C21orf33 chromosome 21 open reading frame 33 O ES1 protein homolog, mitochondrial|Keio novel protein I|human HES1 protein, homolog to E.coli and zebrafish ES1 protein 20121230 -9606 8212 AABT - - MIM:109660 21 - Beta-amino acids, renal transport of unknown - - - - 20110215 -9606 8213 BAS - - MIM:109670 21 - Beta-adrenergic stimulation, response to unknown - - - - 20110215 -9606 8214 DGCR6 - - HGNC:2846|MIM:601279|Ensembl:ENSG00000183628|HPRD:03177|Vega:OTTHUMG00000150162 22 22q11.21|22q11 DiGeorge syndrome critical region gene 6 protein-coding DGCR6 DiGeorge syndrome critical region gene 6 O DiGeorge syndrome critical region protein 6|protein DGCR6 20121230 -9606 8215 DVL1L1 - DSH|DVL|DVL-22|DVL1|DVL4 HGNC:3085|MIM:601225 22 22q11.21|22q11 dishevelled, dsh homolog 1 (Drosophila)-like 1 pseudo DVL1L1 dishevelled, dsh homolog 1 (Drosophila)-like 1 O - 20121230 -9606 8216 LZTR1 - LZTR-1 HGNC:6742|MIM:600574|Ensembl:ENSG00000099949|HPRD:08992|Vega:OTTHUMG00000150878 22 22q11.21|22q11.1-q11.2 leucine-zipper-like transcription regulator 1 protein-coding LZTR1 leucine-zipper-like transcription regulator 1 O leucine-zipper-like regulator-1|leucine-zipper-like transcriptional regulator 1 20121230 -9606 8217 IGLJ@ - IGLJ HGNC:5862|MIM:147230 22 22q11.2 immunoglobulin lambda joining cluster other IGLJ@ immunoglobulin lambda joining cluster O - 20120208 -9606 8218 CLTCL1 - CHC22|CLH22|CLTCL|CLTD HGNC:2093|MIM:601273|Ensembl:ENSG00000070371|HPRD:03172|Vega:OTTHUMG00000150109 22 22q11.21 clathrin, heavy chain-like 1 protein-coding CLTCL1 clathrin, heavy chain-like 1 O CLH-22|Clathrin, heavy polypeptide D|clathrin heavy chain 2|clathrin heavy chain on chromosome 22|clathrin, heavy polypeptide-like 1 20121230 -9606 8220 DGCR14 - DGCR13|DGS-H|DGS-I|DGSH|DGSI|ES2|Es2el HGNC:16817|MIM:601755|Ensembl:ENSG00000100056|HPRD:03452|HPRD:18586|Vega:OTTHUMG00000150119 22 22q11.21|22q11.2 DiGeorge syndrome critical region gene 14 protein-coding DGCR14 DiGeorge syndrome critical region gene 14 O DiGeorge syndrome critical region gene 13|DiGeorge syndrome critical region gene DGSI|DiGeorge syndrome gene H|DiGeorge syndrome gene I|Protein DGCR13|diGeorge syndrome critical region 13|diGeorge syndrome critical region 14|diGeorge syndrome protein H|protein DGCR14 20121230 -9606 8221 OGS2 - BBBG2|GBBB2 MIM:145410 22 22q11.2 Opitz G syndrome, type II unknown - - - - 20120622 -9606 8224 SYN3 LL22NC03-28H9.1 - HGNC:11496|MIM:602705|Ensembl:ENSG00000185666|HPRD:04083|Vega:OTTHUMG00000031004 22 22q12.3 synapsin III protein-coding SYN3 synapsin III O cN28H9.2 (synapsin III)|synapsin-3 20121230 -9606 8225 GTPBP6 LL0XNC01-136G2.2 PGPL HGNC:30189|MIM:300124|Ensembl:ENSG00000178605|HPRD:02128|Vega:OTTHUMG00000022694 X|Y Xp22.33; Yp11.32 GTP binding protein 6 (putative) protein-coding GTPBP6 GTP binding protein 6 (putative) O putative GTP-binding protein 6 20121230 -9606 8226 HDHD1 - DXF68S1E|FAM16AX|GS1|HDHD1A HGNC:16818|MIM:306480|Ensembl:ENSG00000130021|HPRD:02383|Vega:OTTHUMG00000021101 X Xp22.32 haloacid dehalogenase-like hydrolase domain containing 1 protein-coding HDHD1 haloacid dehalogenase-like hydrolase domain containing 1 O 5'-PsiMPase|family with sequence similarity 16, member A, X-linked|haloacid dehalogenase-like hydrolase domain containing 1A|haloacid dehalogenase-like hydrolase domain-containing protein 1|haloacid dehalogenase-like hydrolase domain-containing protein 1A|pseudouridine-5'-monophosphatase 20121230 -9606 8227 AKAP17A RP13-297E16.1 721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y HGNC:18783|MIM:312095|MIM:465000|Ensembl:ENSG00000197976|HPRD:02419|Vega:OTTHUMG00000021063 X|Y Xp22.33 and Yp11.32 A kinase (PRKA) anchor protein 17A protein-coding AKAP17A A kinase (PRKA) anchor protein 17A O A-kinase anchor protein 17A|B-lymphocyte surface antigen|protein kinase A-anchoring protein 17A|pseudoautosomal gene XE7|splicing factor, arginine/serine-rich 17A 20121230 -9606 8228 PNPLA4 - DXS1283E|GS2|iPLA2eta HGNC:24887|MIM:300102|Ensembl:ENSG00000006757|HPRD:02112|Vega:OTTHUMG00000021103 X Xp22.3 patatin-like phospholipase domain containing 4 protein-coding PNPLA4 patatin-like phospholipase domain containing 4 O IPLA2 eta|calcium independent phospholipases A2 eta|patatin-like phospholipase domain-containing protein 4 20121230 -9606 8231 CND - - MIM:304730 X Xq24-qter Corneal dermoids unknown - - - - 20120622 -9606 8233 ZRSR2 - U2AF1-RS2|U2AF1L2|U2AF1RS2|URP HGNC:23019|MIM:300028|Ensembl:ENSG00000169249|HPRD:02068|Vega:OTTHUMG00000021184 X Xp22.1 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 protein-coding ZRSR2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 O CCCH type zinc finger, RNA-binding motif and serine/arginine rich protein 2|U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2|U2 small nuclear ribonucleoprotein auxiliary factor, small subunit 2|U2(RNU2) small nuclear RNA auxiliary factor 1-like 2|U2AF35-related protein|renal carcinoma antigen NY-REN-20 20121230 -9606 8237 USP11 RP4-659F15.2 UHX1 HGNC:12609|MIM:300050|Ensembl:ENSG00000102226|HPRD:02081|Vega:OTTHUMG00000021437 X Xp11.23 ubiquitin specific peptidase 11 protein-coding USP11 ubiquitin specific peptidase 11 O deubiquitinating enzyme 11|ubiquitin carboxyl-terminal hydrolase 11|ubiquitin carboxyl-terminal hydrolase, X-linked|ubiquitin thioesterase 11|ubiquitin thiolesterase 11|ubiquitin-specific processing protease 11|ubiquitin-specific-processing protease 11 20121230 -9606 8239 USP9X - DFFRX|FAF|FAM HGNC:12632|MIM:300072|Ensembl:ENSG00000124486|HPRD:02091|Vega:OTTHUMG00000021367 X Xp11.4 ubiquitin specific peptidase 9, X-linked protein-coding USP9X ubiquitin specific peptidase 9, X-linked O Drosophila fat facets related, X-linked|deubiquitinating enzyme FAF-X|fat facets in mammals|fat facets protein related, X-linked|fat facets protein-related, X-linked|hFAM|probable ubiquitin carboxyl-terminal hydrolase FAF-X|ubiquitin specific protease 9, X chromosome (fat facets-like Drosophila)|ubiquitin thioesterase FAF-X|ubiquitin thiolesterase FAF-X|ubiquitin-specific processing protease FAF-X|ubiquitin-specific protease 9, X chromosome|ubiquitin-specific-processing protease FAF-X 20121230 -9606 8241 RBM10 CTD-2522E6.5 DXS8237E|GPATC9|GPATCH9|S1-1|TARPS|ZRANB5 HGNC:9896|MIM:300080|Ensembl:ENSG00000182872|HPRD:02095|Vega:OTTHUMG00000021432 X Xp11.23 RNA binding motif protein 10 protein-coding RBM10 RNA binding motif protein 10 O RNA-binding protein 10|RNA-binding protein S1-1|g patch domain-containing protein 9 20121230 -9606 8242 KDM5C RP11-258C19.2 DXS1272E|JARID1C|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169 HGNC:11114|MIM:314690|Ensembl:ENSG00000126012|HPRD:02442|Vega:OTTHUMG00000021606 X Xp11.22-p11.21 lysine (K)-specific demethylase 5C protein-coding KDM5C lysine (K)-specific demethylase 5C O JmjC domain-containing protein SMCX|Jumonji, AT rich interactive domain 1C (RBP2-like)|Jumonji/ARID domain-containing protein 1C|Smcx homolog, X chromosome|Smcy homolog, X-linked|histone demethylase JARID1C|lysine-specific demethylase 5C|protein SmcX|selected cDNA on X 20121230 -9606 8243 SMC1A RP6-29D12.1 CDLS2|DXS423E|SB1.8|SMC1|SMC1L1|SMC1alpha|SMCB HGNC:11111|MIM:300040|Ensembl:ENSG00000072501|HPRD:02077|Vega:OTTHUMG00000021614 X Xp11.22-p11.21 structural maintenance of chromosomes 1A protein-coding SMC1A structural maintenance of chromosomes 1A O SMC protein 1A|SMC-1-alpha|SMC-1A|SMC1 (structural maintenance of chromosomes 1, yeast)-like 1|SMC1 structural maintenance of chromosomes 1-like 1|segregation of mitotic chromosomes 1|structural maintenance of chromosomes protein 1A 20121230 -9606 8245 IDDMX - - MIM:300136 X Xp11 Diabetes mellitus, insulin-dependent, X-linked, susceptibility to unknown - - - - 20120622 -9606 8246 MRXS12 - - MIM:309545 X Xp11 Mental retardation, X-linked, syndromic 12 unknown - - - - 20110215 -9606 8248 DXS435E - A11 MIM:300010 X Xq A-11 gene unknown - - - - 20100404 -9606 8249 MGR2 - MFTS MIM:300125 X Xq Migraine, familial typical, susceptibility to unknown - - - - 20120622 -9606 8251 HNRNPDP - AUF1B|AUF1P|HNRPDP HGNC:5038 X Xq11.1 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene pseudo HNRNPDP heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene O - 20121230 -9606 8255 BZX - BDCS MIM:301845 X Xq24-q27 Bazex syndrome unknown - - - - 20120622 -9606 8258 GUST - - MIM:309555 X Xq26 Gustavson mental retardation syndrome (with microcephaly, optic unknown - - - - 20120622 -9606 8259 INDX - - MIM:300076 X Xq26-qter Immunoneurologic syndrome X-linked, of Wood, Black, and Norbury unknown - - - - 20120622 -9606 8260 NAA10 - ARD1|ARD1A|DXS707|NATD|TE2 HGNC:18704|MIM:300013|Ensembl:ENSG00000102030|HPRD:02056|Vega:OTTHUMG00000024225 X Xq28 N(alpha)-acetyltransferase 10, NatA catalytic subunit protein-coding NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit O ARD1 homolog A, N-acetyltransferase|N-acetyltransferase ARD1, human homolog of|N-alpha-acetyltransferase 10|N-alpha-acetyltransferase 10, NatA catalytic subunit|N-terminal acetyltransferase complex ARD1 subunit homolog A 20121230 -9606 8263 F8A1 - DXS522E|F8A|HAP40 HGNC:3547|MIM:305423|Ensembl:ENSG00000197932|HPRD:02374|Vega:OTTHUMG00000013500 X Xq28 coagulation factor VIII-associated 1 protein-coding F8A1 coagulation factor VIII-associated 1 O coagulation factor VIII-associated (intronic transcript) 1|cpG island protein|factor VIII associated protein|factor VIII intron 22 protein|huntingtin-associated protein 40 20121223 -9606 8266 UBL4A XX-FW89031B12.1 DX254E|DXS254E|G6PD|GDX|GET5|MDY2|TMA24|UBL4 HGNC:12505|MIM:312070|Ensembl:ENSG00000102178|HPRD:02417|Vega:OTTHUMG00000013370 X Xq28 ubiquitin-like 4A protein-coding UBL4A ubiquitin-like 4A O ubiquitin-like 4|ubiquitin-like protein 4A|ubiquitin-like protein GDX 20121230 -9606 8268 IPOX - CIIP|CIIPX MIM:300048 - - Intestinal pseudoobstruction, neuronal, primary idiopathic unknown - - - - 20120622 -9606 8269 TMEM187 - CXorf12|DXS9878E|ITBA1 HGNC:13705|MIM:300059|Ensembl:ENSG00000177854|HPRD:02086|Vega:OTTHUMG00000024220 X Xq28 transmembrane protein 187 protein-coding TMEM187 transmembrane protein 187 O - 20121230 -9606 8270 LAGE3 XX-FW81657B9.4 CVG5|DXS9879E|DXS9951E|ESO3|ITBA2 HGNC:26058|MIM:300060|Ensembl:ENSG00000196976|HPRD:02087|Vega:OTTHUMG00000033294 X Xq28 L antigen family, member 3 protein-coding LAGE3 L antigen family, member 3 O L antigen family member 3|protein ESO-3 20121230 -9606 8273 SLC10A3 XX-FW89031B12.2 DXS253E|P3 HGNC:22979|MIM:312090|Ensembl:ENSG00000126903|HPRD:02418|Vega:OTTHUMG00000013369 X Xq28 solute carrier family 10 (sodium/bile acid cotransporter family), member 3 protein-coding SLC10A3 solute carrier family 10 (sodium/bile acid cotransporter family), member 3 O P3 protein|Protein P3|solute carrier family 10 member 3 20121230 -9606 8277 TKTL1 LL0XNC01-14B7.1 TKR|TKT2 HGNC:11835|MIM:300044|Ensembl:ENSG00000007350|HPRD:02080|Vega:OTTHUMG00000022707 X Xq28 transketolase-like 1 protein-coding TKTL1 transketolase-like 1 O TK 2|transketolase-2|transketolase-like protein 1|transketolase-related protein 20121230 -9606 8284 KDM5D - HY|HYA|JARID1D|SMCY HGNC:11115|MIM:426000|Ensembl:ENSG00000012817|HPRD:02464|Vega:OTTHUMG00000036508 Y Yq11 lysine (K)-specific demethylase 5D protein-coding KDM5D lysine (K)-specific demethylase 5D O H-Y|Jumonji, AT rich interactive domain 1D (RBP2-like)|SMC homolog, Y chromosome|Smcy homolog, Y-linked|histocompatibility Y antigen|histone demethylase JARID1D|jumonji/ARID domain-containing protein 1D|lysine-specific demethylase 5D|protein SmcY|selected mouse cDNA on Y, human homolog of 20121230 -9606 8287 USP9Y - DFFRY|SPGFY2 HGNC:12633|MIM:400005|Ensembl:ENSG00000114374|HPRD:02449|Vega:OTTHUMG00000036469 Y Yq11.2 ubiquitin specific peptidase 9, Y-linked protein-coding USP9Y ubiquitin specific peptidase 9, Y-linked O deubiquitinating enzyme FAF-Y|fat facets protein-related, Y-linked|probable ubiquitin carboxyl-terminal hydrolase FAF-Y|ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila)|ubiquitin thioesterase FAF-Y|ubiquitin thiolesterase FAF-Y|ubiquitin-specific processing protease FAF-Y|ubiquitin-specific protease 9, Y chromosome|ubiquitin-specific-processing protease FAF-Y 20121230 -9606 8288 EPX - EPO|EPP|EPX-PEN HGNC:3423|MIM:131399|Ensembl:ENSG00000121053|HPRD:00576|Vega:OTTHUMG00000178802 17 17q23.1 eosinophil peroxidase protein-coding EPX eosinophil peroxidase O - 20121230 -9606 8289 ARID1A RP1-50O24.1 B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 HGNC:11110|MIM:603024|Ensembl:ENSG00000117713|HPRD:04319|Vega:OTTHUMG00000004004 1 1p35.3 AT rich interactive domain 1A (SWI-like) protein-coding ARID1A AT rich interactive domain 1A (SWI-like) O ARID domain-containing protein 1A|AT-rich interactive domain-containing protein 1A|BRG1-associated factor 250a|OSA1 nuclear protein|SWI-like protein|SWI/SNF complex protein p270|SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1|brain protein 120|chromatin remodeling factor p250|osa homolog 1 20121230 -9606 8290 HIST3H3 - H3.4|H3/g|H3FT|H3t HGNC:4778|MIM:602820|Ensembl:ENSG00000168148|HPRD:04156|Vega:OTTHUMG00000040044 1 1q42 histone cluster 3, H3 protein-coding HIST3H3 histone cluster 3, H3 O H3 histone family, member T|H3/t|histone 3, H3|histone H3.1t 20121230 -9606 8291 DYSF - FER1L1|LGMD2B|MMD1 HGNC:3097|MIM:603009|Ensembl:ENSG00000135636|HPRD:04307|Vega:OTTHUMG00000129757 2 2p13.3 dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) protein-coding DYSF dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) O dysferlin|dystrophy-associated fer-1-like 1|dystrophy-associated fer-1-like protein|fer-1-like protein 1 20121230 -9606 8292 COLQ - EAD HGNC:2226|MIM:603033|Ensembl:ENSG00000206561|HPRD:04328|Vega:OTTHUMG00000156233 3 3p25 collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase protein-coding COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase O AChE Q subunit|acetylcholinesterase collagenic tail peptide|acetylcholinesterase-associated collagen|collagenic tail of endplate acetylcholinesterase|single strand of homotrimeric collagen-like tail subunit of asymmetric acetylcholinesterase 20121230 -9606 8293 SERF1A - 4F5|FAM2A|H4F5|SERF1|SMAM1 HGNC:10755|MIM:603011|Ensembl:ENSG00000172058|HPRD:04308|Vega:OTTHUMG00000162419 5 5q13 small EDRK-rich factor 1A (telomeric) protein-coding SERF1A small EDRK-rich factor 1A (telomeric) O SMA modifier 1|protein 4F5|small EDRK-rich factor 1|spinal muscular atrophy-related gene H4F5 20121230 -9606 8294 HIST1H4I - H4/m|H4FM|H4M HGNC:4793|MIM:602833|Ensembl:ENSG00000198339|HPRD:09109|Vega:OTTHUMG00000014471 6 6p21.33 histone cluster 1, H4i protein-coding HIST1H4I histone cluster 1, H4i O H4 histone family, member M|Histone 4 family, member M|histone 1, H4i|histone H4|histone family member 20121230 -9606 8295 TRRAP - PAF350/400|PAF400|STAF40|TR-AP|Tra1 HGNC:12347|MIM:603015|Ensembl:ENSG00000196367|HPRD:04310|Vega:OTTHUMG00000150403 7 7q21.2-q22.1 transformation/transcription domain-associated protein protein-coding TRRAP transformation/transcription domain-associated protein O 350/400 kDa PCAF-associated factor|tra1 homolog 20121230 -9606 8301 PICALM - CALM|CLTH|LAP HGNC:15514|MIM:603025|Ensembl:ENSG00000073921|HPRD:04320|Vega:OTTHUMG00000166981 11 11q14 phosphatidylinositol binding clathrin assembly protein protein-coding PICALM phosphatidylinositol binding clathrin assembly protein O clathrin assembly lymphoid myeloid leukemia protein|phosphatidylinositol-binding clathrin assembly protein 20121230 -9606 8302 KLRC4 - NKG2-F|NKG2F HGNC:6377|MIM:602893|Ensembl:ENSG00000183542|HPRD:16008|Vega:OTTHUMG00000168575 12 12p13.2-p12.3 killer cell lectin-like receptor subfamily C, member 4 protein-coding KLRC4 killer cell lectin-like receptor subfamily C, member 4 O NK cell receptor F|NKG2-F type II integral membrane protein|NKG2-F-activating NK receptor|natual killer cell group 2-F 20121230 -9606 8303 SNN - - HGNC:11149|MIM:603032|Ensembl:ENSG00000184602|HPRD:04327|Vega:OTTHUMG00000090535 16 16p13 stannin protein-coding SNN stannin O AG8_1 20121230 -9606 8309 ACOX2 - BCOX|BRCACOX|BRCOX|THCCox HGNC:120|MIM:601641|Ensembl:ENSG00000168306|HPRD:09037|Vega:OTTHUMG00000159154 3 3p14.3 acyl-CoA oxidase 2, branched chain protein-coding ACOX2 acyl-CoA oxidase 2, branched chain O 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanoyl-CoA 24-hydroxylase|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanoyl-CoA oxidase|THCA-CoA oxidase|acyl-Coenzyme A oxidase 2, branched chain|peroxisomal acyl-coenzyme A oxidase 2|peroxisomal branched chain acyl-CoA oxidase|trihydroxycoprostanoyl-CoA oxidase 20121230 -9606 8310 ACOX3 - - HGNC:121|MIM:603402|Ensembl:ENSG00000087008|HPRD:04552|Vega:OTTHUMG00000090509 4 4p15.3 acyl-CoA oxidase 3, pristanoyl protein-coding ACOX3 acyl-CoA oxidase 3, pristanoyl O BRCACox|acyl-Coenzyme A oxidase 3, pristanoyl|branched-chain acyl-CoA oxidase|peroxisomal acyl-coenzyme A oxidase 3|pristanoyl-CoA oxidase 20121230 -9606 8312 AXIN1 LA16c-314G4.3 AXIN|PPP1R49 HGNC:903|MIM:603816|Ensembl:ENSG00000103126|HPRD:04819|Vega:OTTHUMG00000064930 16 16p13.3 axin 1 protein-coding AXIN1 axin 1 O axin-1|axis inhibition protein 1|axis inhibitor 1|fused, mouse, homolog of|protein phosphatase 1, regulatory subunit 49 20121230 -9606 8313 AXIN2 - AXIL HGNC:904|MIM:604025|Ensembl:ENSG00000168646|HPRD:04935|Vega:OTTHUMG00000179353 17 17q23-q24 axin 2 protein-coding AXIN2 axin 2 O axin-2|axin-like protein|axis inhibition protein 2|conductin 20121230 -9606 8314 BAP1 hucep-6 HUCEP-13|TPDS|UCHL2 HGNC:950|MIM:603089|Ensembl:ENSG00000163930|HPRD:04366|Vega:OTTHUMG00000158392 3 3p21.31-p21.2 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) protein-coding BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) O cerebral protein 6|cerebral protein-13|ubiquitin carboxyl-terminal hydrolase BAP1 20121230 -9606 8315 BRAP - BRAP2|IMP|RNF52 HGNC:1099|MIM:604986|Ensembl:ENSG00000089234|Vega:OTTHUMG00000169600 12 12q24 BRCA1 associated protein protein-coding BRAP BRCA1 associated protein O BRCA1-associated protein|RING finger protein 52|galectin-2-binding protein|impedes mitogenic signal propagation|renal carcinoma antigen NY-REN-63 20121230 -9606 8317 CDC7 - CDC7L1|HsCDC7|Hsk1|huCDC7 HGNC:1745|MIM:603311|Ensembl:ENSG00000097046|HPRD:10345|Vega:OTTHUMG00000047810 1 1p22 cell division cycle 7 homolog (S. cerevisiae) protein-coding CDC7 cell division cycle 7 homolog (S. cerevisiae) O CDC7 (cell division cycle 7, S. cerevisiae, homolog)-like 1|CDC7-related kinase|cell division cycle 7-like protein 1|cell division cycle 7-related protein kinase 20121230 -9606 8318 CDC45 UNQ374/PRO710 CDC45L|CDC45L2|PORC-PI-1 HGNC:1739|MIM:603465|Ensembl:ENSG00000093009|HPRD:09145|Vega:OTTHUMG00000150386 22 22q11.21 cell division cycle 45 homolog (S. cerevisiae) protein-coding CDC45 cell division cycle 45 homolog (S. cerevisiae) O CDC45 cell division cycle 45 homolog|CDC45-related protein|cell division control protein 45 homolog|cell division cycle 45-like 2|human CDC45 20121230 -9606 8320 EOMES - TBR2 HGNC:3372|MIM:604615|Ensembl:ENSG00000163508|HPRD:07054|Vega:OTTHUMG00000130570 3 3p24.1 eomesodermin protein-coding EOMES eomesodermin O T-box brain protein 2|T-box brain2|T-brain-2|TBR-2|eomesodermin homolog|t box, brain, 2 20121230 -9606 8321 FZD1 - - HGNC:4038|MIM:603408|Ensembl:ENSG00000157240|HPRD:04558|Vega:OTTHUMG00000023046 7 7q21 frizzled family receptor 1 protein-coding FZD1 frizzled family receptor 1 O Wnt receptor|frizzled 1, seven transmembrane spanning receptor|frizzled homolog 1|frizzled, Drosophila, homolog of, 1|frizzled-1|fz-1|fzE1|hFz1 20121230 -9606 8322 FZD4 - CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 HGNC:4042|MIM:604579|Ensembl:ENSG00000174804|HPRD:05203|Vega:OTTHUMG00000167231 11 11q14.2 frizzled family receptor 4 protein-coding FZD4 frizzled family receptor 4 O WNT receptor frizzled-4|frizzled 4, seven transmembrane spanning receptor|frizzled homolog 4|frizzled-4 20121230 -9606 8323 FZD6 - FZ-6|FZ6|HFZ6|NDNC10 HGNC:4044|MIM:603409|Ensembl:ENSG00000164930|HPRD:04559|Vega:OTTHUMG00000164840 8 8q22.3-q23.1 frizzled family receptor 6 protein-coding FZD6 frizzled family receptor 6 O frizzled 6, seven transmembrane spanning receptor|frizzled homolog 6|frizzled-6|seven transmembrane helix receptor 20121230 -9606 8324 FZD7 - FzE3 HGNC:4045|MIM:603410|Ensembl:ENSG00000155760|HPRD:04560|Vega:OTTHUMG00000132841 2 2q33 frizzled family receptor 7 protein-coding FZD7 frizzled family receptor 7 O Frizzled, drosophila, homolog of, 7|frizzled 7, seven transmembrane spanning receptor|frizzled homolog 7|frizzled-7|fz-7|hFz7 20121230 -9606 8325 FZD8 - FZ-8|hFZ8 HGNC:4046|MIM:606146|Ensembl:ENSG00000177283|HPRD:05852|Vega:OTTHUMG00000017956 10 10p11.21 frizzled family receptor 8 protein-coding FZD8 frizzled family receptor 8 O frizzled 8, seven transmembrane spanning receptor|frizzled homolog 8|frizzled-8 20121230 -9606 8326 FZD9 - CD349|FZD3 HGNC:4047|MIM:601766|Ensembl:ENSG00000188763|HPRD:03460|Vega:OTTHUMG00000023051 7 7q11.23 frizzled family receptor 9 protein-coding FZD9 frizzled family receptor 9 O frizzled 9, seven transmembrane spanning receptor|frizzled homolog 9|frizzled-9|fz-9|fzE6|hFz9 20121230 -9606 8327 GABPAP - E4TF1|E4TF1B|GABPB1 HGNC:4072 7 7q11.2 GA binding protein transcription factor, alpha subunit pseudogene pseudo GABPAP GA binding protein transcription factor, alpha subunit pseudogene O - 20121230 -9606 8328 GFI1B RP11-415H23.1 - HGNC:4238|MIM:604383|Ensembl:ENSG00000165702|HPRD:05088|Vega:OTTHUMG00000020848 9 9q34.13 growth factor independent 1B transcription repressor protein-coding GFI1B growth factor independent 1B transcription repressor O growth factor independent 1B (potential regulator of CDKN1A, translocated in CML)|growth factor independent protein 1B|potential regulator of CDKN1A translocated in CML|zinc finger protein Gfi-1b 20121230 -9606 8329 HIST1H2AI - H2A/c|H2AFC HGNC:4725|MIM:602787|Ensembl:ENSG00000196747|HPRD:04153|Vega:OTTHUMG00000014484 6 6p22.1 histone cluster 1, H2ai protein-coding HIST1H2AI histone cluster 1, H2ai O H2A histone family, member C|H2A.1|histone 1, H2ai|histone H2A type 1 20121230 -9606 8330 HIST1H2AK - H2A/d|H2AFD HGNC:4726|MIM:602788|Ensembl:ENSG00000184348|HPRD:09100|Vega:OTTHUMG00000016382 6 6p22.1 histone cluster 1, H2ak protein-coding HIST1H2AK histone cluster 1, H2ak O H2A histone family, member D|H2A.1|histone 1, H2ak|histone H2A type 1|histone H2A type 1-J 20121230 -9606 8331 HIST1H2AJ - H2A/E|H2AFE|dJ160A22.4 HGNC:4727|MIM:602791|Ensembl:ENSG00000182611|HPRD:09102|Vega:OTTHUMG00000014486 6 6p22.1 histone cluster 1, H2aj protein-coding HIST1H2AJ histone cluster 1, H2aj O H2A histone family, member E|histone 1, H2aj 20121230 -9606 8332 HIST1H2AL - H2A.i|H2A/i|H2AFI|dJ193B12.9 HGNC:4730|MIM:602793|Ensembl:ENSG00000198374|HPRD:09103|Vega:OTTHUMG00000014492 6 6p22.1 histone cluster 1, H2al protein-coding HIST1H2AL histone cluster 1, H2al O H2A histone family, member I|H2A.1|histone 1, H2al|histone H2A type 1 20121230 -9606 8333 HIST1H2APS4 - H2A/k|H2AFK|H2AFKP|dJ34B20.2|pH2A/k HGNC:4732 6 6p21.3 histone cluster 1, H2a, pseudogene 4 pseudo HIST1H2APS4 histone cluster 1, H2a, pseudogene 4 O - 20121230 -9606 8334 HIST1H2AC - H2A/l|H2AFL|dJ221C16.4 HGNC:4733|MIM:602794|Ensembl:ENSG00000180573|HPRD:09104|Vega:OTTHUMG00000014428 6 6p22.1 histone cluster 1, H2ac protein-coding HIST1H2AC histone cluster 1, H2ac O H2A histone family, member L|histone 1, H2ac|histone H2A type 1-C|histone H2A/l|histone H2AC 20121230 -9606 8335 HIST1H2AB - H2A/m|H2AFM HGNC:4734|MIM:602795|Ensembl:ENSG00000137259|HPRD:09105|Vega:OTTHUMG00000014420 6 6p22.1 histone cluster 1, H2ab protein-coding HIST1H2AB histone cluster 1, H2ab O H2A histone family, member M|histone 1, H2ab|histone H2A type 1-B/E|histone H2A/m 20121230 -9606 8336 HIST1H2AM - H2A.1|H2A/n|H2AFN|dJ193B12.1 HGNC:4735|MIM:602796|Ensembl:ENSG00000233224|HPRD:09106|Vega:OTTHUMG00000014494 6 6p22.1 histone cluster 1, H2am protein-coding HIST1H2AM histone cluster 1, H2am O H2A histone family, member N|histone 1, H2am|histone H2A type 1 20121230 -9606 8337 HIST2H2AA3 - H2A|H2A.2|H2A/O|H2A/q|H2AFO|H2a-615|HIST2H2AA HGNC:4736|MIM:142720|Ensembl:ENSG00000183558|HPRD:08851|Vega:OTTHUMG00000012191 1 1q21.2 histone cluster 2, H2aa3 protein-coding HIST2H2AA3 histone cluster 2, H2aa3 O H2A histone family, member O|histone 2, H2aa3|histone H2A type 2-A 20121230 -9606 8338 HIST2H2AC - H2A|H2A-GL101|H2A/q|H2AFQ HGNC:4738|MIM:602797|Ensembl:ENSG00000184260|HPRD:09107|Vega:OTTHUMG00000035825 1 1q21.2 histone cluster 2, H2ac protein-coding HIST2H2AC histone cluster 2, H2ac O H2A histone family, member Q|histone 2, H2ac|histone H2A type 2-C|histone H2A-GL101|histone H2A/q|histone IIa 20121230 -9606 8339 HIST1H2BG - H2B.1A|H2B/a|H2BFA|dJ221C16.8 HGNC:4746|MIM:602798|Ensembl:ENSG00000187990|HPRD:11897|Vega:OTTHUMG00000014446 6 6p21.3 histone cluster 1, H2bg protein-coding HIST1H2BG histone cluster 1, H2bg O H2B histone family, member A|histone 1, H2bg|histone H2B type 1-C/E/F/G/I|histone H2B.1 A|histone H2B.a 20121230 -9606 8340 HIST1H2BL - H2B/c|H2BFC|dJ97D16.4 HGNC:4748|MIM:602800|Ensembl:ENSG00000185130|HPRD:11898|Vega:OTTHUMG00000014485 6 6p22.1 histone cluster 1, H2bl protein-coding HIST1H2BL histone cluster 1, H2bl O H2B histone family, member C|histone 1, H2bl|histone H2B type 1-L|histone H2B.c 20121230 -9606 8341 HIST1H2BN RP1-193B12.10-001 H2B/d|H2BFD HGNC:4749|MIM:602801|Ensembl:ENSG00000233822|HPRD:11899|Vega:OTTHUMG00000016397 6 6p22.1 histone cluster 1, H2bn protein-coding HIST1H2BN histone cluster 1, H2bn O H2B histone family, member D|histone 1, H2bn|histone H2B type 1-N|histone H2B.d 20121230 -9606 8342 HIST1H2BM - H2B/e|H2BFE|dJ160A22.3 HGNC:4750|MIM:602802|Ensembl:ENSG00000196374|HPRD:04154|Vega:OTTHUMG00000014489 6 6p22.1 histone cluster 1, H2bm protein-coding HIST1H2BM histone cluster 1, H2bm O H2B histone family, member E|histone 1, H2bm|histone H2B type 1-M|histone H2B.e 20121230 -9606 8343 HIST1H2BF - H2B/g|H2BFG HGNC:4752|MIM:602804|Ensembl:ENSG00000197846|HPRD:11900|Vega:OTTHUMG00000014445 6 6p22.1 histone cluster 1, H2bf protein-coding HIST1H2BF histone cluster 1, H2bf O H2B histone family, member G|histone 1, H2bf|histone H2B type 1-C/E/F/G/I|histone H2B.1 A|histone H2B.g 20121230 -9606 8344 HIST1H2BE - H2B.h|H2B/h|H2BFH|dJ221C16.8 HGNC:4753|MIM:602805|Ensembl:ENSG00000197697|HPRD:11901|Vega:OTTHUMG00000014427 6 6p22.1 histone cluster 1, H2be protein-coding HIST1H2BE histone cluster 1, H2be O H2B histone family, member H|histone 1, H2be|histone H2B type 1-C/E/F/G/I|histone H2B.1 A|histone H2B.h 20121230 -9606 8345 HIST1H2BH - H2B/j|H2BFJ HGNC:4755|MIM:602806|Ensembl:ENSG00000197459|HPRD:11902|Vega:OTTHUMG00000014447 6 6p21.3 histone cluster 1, H2bh protein-coding HIST1H2BH histone cluster 1, H2bh O H2B histone family, member J|histone 1, H2bh|histone H2B type 1-H|histone H2B.j 20121230 -9606 8346 HIST1H2BI - H2B/k|H2BFK HGNC:4756|MIM:602807|Ensembl:ENSG00000168242|HPRD:11903|Vega:OTTHUMG00000014448 6 6p22.1 histone cluster 1, H2bi protein-coding HIST1H2BI histone cluster 1, H2bi O H2B histone family, member K|histone 1, H2bi|histone H2B type 1-C/E/F/G/I|histone H2B.1 A|histone H2B.k 20121230 -9606 8347 HIST1H2BC - H2B.1|H2B/l|H2BFL|dJ221C16.3 HGNC:4757|MIM:602847|Ensembl:ENSG00000180596|HPRD:13656|Vega:OTTHUMG00000014425 6 6p22.1 histone cluster 1, H2bc protein-coding HIST1H2BC histone cluster 1, H2bc O H2B histone family, member L|histone 1, H2bc|histone H2B type 1-C/E/F/G/I|histone H2B.1 A|histone H2B.l 20121230 -9606 8348 HIST1H2BO - H2B.2|H2B/n|H2BFN|dJ193B12.2 HGNC:4758|MIM:602808|Ensembl:ENSG00000196331|HPRD:11904|Vega:OTTHUMG00000014493 6 6p22.1 histone cluster 1, H2bo protein-coding HIST1H2BO histone cluster 1, H2bo O H2B histone family, member N|histone 1, H2bo|histone H2B type 1-O|histone H2B.2|histone H2B.n 20121230 -9606 8349 HIST2H2BE - GL105|H2B|H2B.1|H2BFQ|H2BGL105|H2BQ HGNC:4760|MIM:601831|Ensembl:ENSG00000184678|HPRD:03494|Vega:OTTHUMG00000012095 1 1q21.2 histone cluster 2, H2be protein-coding HIST2H2BE histone cluster 2, H2be O H2B histone family, member Q|histone 2, H2be|histone H2B type 2-E|histone H2B-GL105|histone H2B.q 20121230 -9606 8350 HIST1H3A - H3/A|H3FA HGNC:4766|MIM:602810|Ensembl:ENSG00000198366|HPRD:04155|Vega:OTTHUMG00000014418 6 6p22.1 histone cluster 1, H3a protein-coding HIST1H3A histone cluster 1, H3a O H3 histone family, member A|histone 1, H3a|histone H3.1|histone H3/a 20121230 -9606 8351 HIST1H3D - H3/b|H3FB HGNC:4767|MIM:602811|Ensembl:ENSG00000197409|HPRD:11905 6 6p22.1 histone cluster 1, H3d protein-coding HIST1H3D histone cluster 1, H3d O H3 histone family, member B|histone 1, H3d|histone H3.1|histone H3/b 20121230 -9606 8352 HIST1H3C - H3.1|H3/c|H3FC HGNC:4768|MIM:602812|Ensembl:ENSG00000196532|HPRD:11906|Vega:OTTHUMG00000014416 6 6p22.1 histone cluster 1, H3c protein-coding HIST1H3C histone cluster 1, H3c O H3 histone family, member C|histone 1, H3c|histone H3.1|histone H3/c 20121230 -9606 8353 HIST1H3E RP1-34B20.8 H3.1|H3/d|H3FD HGNC:4769|MIM:602813|Ensembl:ENSG00000196966|HPRD:11907|Vega:OTTHUMG00000014434 6 6p22.1 histone cluster 1, H3e protein-coding HIST1H3E histone cluster 1, H3e O H3 histone family, member D|histone 1, H3e|histone H3.1|histone H3/d 20121230 -9606 8354 HIST1H3I RP1-193B12.1 H3.f|H3/f|H3FF HGNC:4771|MIM:602814|Ensembl:ENSG00000182572|HPRD:11908|Vega:OTTHUMG00000016184 6 6p22.1 histone cluster 1, H3i protein-coding HIST1H3I histone cluster 1, H3i O H3 histone family, member F|histone 1, H3i|histone H3.1|histone H3/f 20121230 -9606 8355 HIST1H3G - H3/h|H3FH HGNC:4772|MIM:602815|Ensembl:ENSG00000256018|HPRD:11909|Vega:OTTHUMG00000014436 6 6p22.1 histone cluster 1, H3g protein-coding HIST1H3G histone cluster 1, H3g O H3 histone family, member H|histone 1, H3g|histone H3.1|histone H3/h 20121230 -9606 8356 HIST1H3J - H3/j|H3FJ HGNC:4774|MIM:602817|Ensembl:ENSG00000197153|HPRD:11911|Vega:OTTHUMG00000016185 6 6p22.1 histone cluster 1, H3j protein-coding HIST1H3J histone cluster 1, H3j O H3 histone family, member J|histone 1, H3j|histone H3.1|histone H3/j 20121230 -9606 8357 HIST1H3H - H3/k|H3F1K|H3FK HGNC:4775|MIM:602818|Ensembl:ENSG00000203813|HPRD:11912|Vega:OTTHUMG00000014483 6 6p22.1 histone cluster 1, H3h protein-coding HIST1H3H histone cluster 1, H3h O H3 histone family, member K|histone 1, H3h|histone H3.1|histone H3/k 20121230 -9606 8358 HIST1H3B - H3/l|H3FL HGNC:4776|MIM:602819|Ensembl:ENSG00000124693|HPRD:11913|Vega:OTTHUMG00000014415 6 6p22.1 histone cluster 1, H3b protein-coding HIST1H3B histone cluster 1, H3b O H3 histone family, member L|histone 1, H3b|histone H3.1|histone H3/l 20121230 -9606 8359 HIST1H4A - H4FA HGNC:4781|MIM:602822|Ensembl:ENSG00000196176|HPRD:04157|Vega:OTTHUMG00000014419 6 6p22.1 histone cluster 1, H4a protein-coding HIST1H4A histone cluster 1, H4a O H4 histone family, member A|histone 1, H4a|histone H4 20121230 -9606 8360 HIST1H4D - H4/b|H4FB|dJ221C16.9 HGNC:4782|MIM:602823|Ensembl:ENSG00000188987|HPRD:11914|Vega:OTTHUMG00000014423 6 6p22.1 histone cluster 1, H4d protein-coding HIST1H4D histone cluster 1, H4d O H4 histone family, member B|histone 1, H4d|histone H4 20121230 -9606 8361 HIST1H4F - H4|H4/c|H4FC HGNC:4783|MIM:602824|Ensembl:ENSG00000198327|HPRD:11915|Vega:OTTHUMG00000014443 6 6p22.1 histone cluster 1, H4f protein-coding HIST1H4F histone cluster 1, H4f O H4 histone family, member C|histone 1, H4f|histone H4 20121230 -9606 8362 HIST1H4K RP1-160A22.2 H4/d|H4F2iii|H4FD|dJ160A22.1 HGNC:4784|MIM:602825|Ensembl:ENSG00000197914|HPRD:11916|Vega:OTTHUMG00000014488 6 6p22.1 histone cluster 1, H4k protein-coding HIST1H4K histone cluster 1, H4k O H4 histone family, member D|histone 1, H4k|histone H4 20121230 -9606 8363 HIST1H4J RP1-160A22.4 H4/e|H4F2iv|H4FE|dJ160A22.2 HGNC:4785|MIM:602826|Ensembl:ENSG00000197238|HPRD:11917|Vega:OTTHUMG00000014487 6 6p22.1 histone cluster 1, H4j protein-coding HIST1H4J histone cluster 1, H4j O H4 histone family, member E|histone 1, H4j|histone H4 20121230 -9606 8364 HIST1H4C - H4/g|H4FG|dJ221C16.1 HGNC:4787|MIM:602827|Ensembl:ENSG00000197061|HPRD:11918|Vega:OTTHUMG00000014429 6 6p22.1 histone cluster 1, H4c protein-coding HIST1H4C histone cluster 1, H4c O H4 histone family, member G|histone 1, H4c|histone H4 20121230 -9606 8365 HIST1H4H - H4/h|H4FH HGNC:4788|MIM:602828|Ensembl:ENSG00000158406|HPRD:11919|Vega:OTTHUMG00000014454 6 6p22.1 histone cluster 1, H4h protein-coding HIST1H4H histone cluster 1, H4h O H4 histone family, member H|histone 1, H4h|histone H4 20121230 -9606 8366 HIST1H4B - H4/I|H4FI HGNC:4789|MIM:602829|Ensembl:ENSG00000124529|HPRD:11920|Vega:OTTHUMG00000014417 6 6p22.1 histone cluster 1, H4b protein-coding HIST1H4B histone cluster 1, H4b O H4 histone family, member I|histone 1, H4b|histone H4 20121230 -9606 8367 HIST1H4E - H4/j|H4FJ HGNC:4790|MIM:602830|Ensembl:ENSG00000198518|HPRD:11921|Vega:OTTHUMG00000014441 6 6p22.1 histone cluster 1, H4e protein-coding HIST1H4E histone cluster 1, H4e O H4 histone family, member J|histone 1, H4e|histone H4 20121230 -9606 8368 HIST1H4L - H4.k|H4/k|H4FK HGNC:4791|MIM:602831|Ensembl:ENSG00000198558|HPRD:11922|Vega:OTTHUMG00000016211 6 6p22.1 histone cluster 1, H4l protein-coding HIST1H4L histone cluster 1, H4l O H4 histone family, member K|histone 1, H4l|histone H4 20121230 -9606 8369 HIST1H4G - H4/l|H4FL HGNC:4792|MIM:602832|Ensembl:ENSG00000124578|HPRD:11806|Vega:OTTHUMG00000014444 6 6p22.1 histone cluster 1, H4g protein-coding HIST1H4G histone cluster 1, H4g O H4 histone family, member L|histone 1, H4g|histone H4-like protein type G 20121230 -9606 8370 HIST2H4A - FO108|H4|H4/n|H4F2|H4FN|HIST2H4 HGNC:4794|MIM:142750|HPRD:11821 1 1q21.2 histone cluster 2, H4a protein-coding HIST2H4A histone cluster 2, H4a O H4 histone family, member N|H4 histone, family 2|histone 2, H4a|histone H4|histone IV, family 2 20121230 -9606 8372 HYAL3 - HYAL-3|LUCA-3|LUCA3 HGNC:5322|MIM:604038|Ensembl:ENSG00000186792|Vega:OTTHUMG00000156936 3 3p21.3 hyaluronoglucosaminidase 3 protein-coding HYAL3 hyaluronoglucosaminidase 3 O hyaluronidase-3|lung carcinoma protein 3 20121230 -9606 8373 IFIT1P1 - G13P1|IFI56P|IFIT1P|II56P HGNC:5408 13 13q13.1 interferon-induced protein with tetratricopeptide repeats 1 pseudogene 1 pseudo IFIT1P1 interferon-induced protein with tetratricopeptide repeats 1 pseudogene 1 O - 20121230 -9606 8377 LOH1CR1 - - HGNC:6661 1 - loss of heterozygosity, 1, chromosomal region 1 other LOH1CR1 loss of heterozygosity, 1, chromosomal region 1 O - 20080828 -9606 8378 LOH19CR1 - DBA HGNC:6660 19 19q13 loss of heterozygosity, 19, chromosomal region 1 other LOH19CR1 loss of heterozygosity, 19, chromosomal region 1 O - 20100721 -9606 8379 MAD1L1 - MAD1|PIG9|TP53I9|TXBP181 HGNC:6762|MIM:602686|Ensembl:ENSG00000002822|HPRD:04065|Vega:OTTHUMG00000151493 7 7p22 MAD1 mitotic arrest deficient-like 1 (yeast) protein-coding MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) O MAD1-like protein 1|mitotic arrest deficient 1-like protein 1|mitotic checkpoint MAD1 protein homolog|mitotic spindle assembly checkpoint protein MAD1|mitotic-arrest deficient 1, yeast, homolog-like 1|tax-binding protein 181|tumor protein p53 inducible protein 9 20121230 -9606 8382 NME5 - NM23-H5|NM23H5|RSPH23 HGNC:7853|MIM:603575|Ensembl:ENSG00000112981|HPRD:04655|Vega:OTTHUMG00000129207 5 5q31 NME/NM23 family member 5 protein-coding NME5 NME/NM23 family member 5 O IPIA-beta|NDK-H 5|NDP kinase homolog 5|inhibitor of p53-induced apoptosis-beta|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)|nucleoside diphosphate kinase homolog 5|radial spoke 23 homolog|testis-specific nm23 homolog 20121230 -9606 8383 OR1A1 - OR17-7 HGNC:8179|Ensembl:ENSG00000172146|HPRD:17681|Vega:OTTHUMG00000090637 17 17p13.3 olfactory receptor, family 1, subfamily A, member 1 protein-coding OR1A1 olfactory receptor, family 1, subfamily A, member 1 O olfactory receptor 17-7|olfactory receptor 1A1|olfactory receptor OR17-11 20121230 -9606 8384 OR1D3P - OR11-13|OR11-22|OR17-23|OR1D6P|OR1D7P HGNC:8184 17 17p13.3 olfactory receptor, family 1, subfamily D, member 3 pseudogene pseudo OR1D3P olfactory receptor, family 1, subfamily D, member 3 pseudogene O - 20121230 -9606 8386 OR1D5 - C17orf2|OR17-2|OR17-30|OR17-31 HGNC:8186|Ensembl:ENSG00000262628|HPRD:17684|Vega:OTTHUMG00000177676 17 17p13.3 olfactory receptor, family 1, subfamily D, member 5 protein-coding OR1D5 olfactory receptor, family 1, subfamily D, member 5 O olfactory receptor 17-31|olfactory receptor 1D5|olfactory receptor OR17-2 20121230 -9606 8387 OR1E1 - HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 HGNC:8189|Ensembl:ENSG00000180016|HPRD:17685|Vega:OTTHUMG00000090643 17 17p13.3 olfactory receptor, family 1, subfamily E, member 1 protein-coding OR1E1 olfactory receptor, family 1, subfamily E, member 1 O OR5-85|olfactory receptor 13-66|olfactory receptor 17-2/17-32|olfactory receptor 1E1|olfactory receptor 1E5|olfactory receptor 1E6|olfactory receptor 5-85|olfactory receptor OR17-18|olfactory receptor OR17-4|olfactory receptor, family 1, subfamily E, member 5|olfactory receptor, family 1, subfamily E, member 6|olfactory receptor, family 1, subfamily E, member 8 pseudogene|olfactory receptor, family 1, subfamily E, member 9 pseudogene|olfactory receptor-like protein HGMP07I 20121230 -9606 8388 OR1E2 - OR17-135|OR17-93|OR1E4|OR1E7|OST529 HGNC:8190|Ensembl:ENSG00000127780|HPRD:17686|Vega:OTTHUMG00000090651 17 17p13.3 olfactory receptor, family 1, subfamily E, member 2 protein-coding OR1E2 olfactory receptor, family 1, subfamily E, member 2 O OR17-136|olfactory receptor 17-93/17-135/17-136|olfactory receptor 1E2|olfactory receptor 1E4|olfactory receptor OR17-17|olfactory receptor OR17-3|olfactory receptor, family 1, subfamily E, member 4|olfactory receptor, family 1, subfamily E, member 7 20121230 -9606 8389 OR1E3 - OR17-210|OR1E3P HGNC:8191 17 17p13.3 olfactory receptor, family 1, subfamily E, member 3 (gene/pseudogene) pseudo OR1E3 olfactory receptor, family 1, subfamily E, member 3 (gene/pseudogene) O - 20121230 -9606 8390 OR1G1 - OR17-130|OR17-209|OR1G2 HGNC:8204|Ensembl:ENSG00000183024|HPRD:17687|Vega:OTTHUMG00000090618 17 17p13.3 olfactory receptor, family 1, subfamily G, member 1 protein-coding OR1G1 olfactory receptor, family 1, subfamily G, member 1 O olfactory receptor 17-209|olfactory receptor 1G1|olfactory receptor 1G2|olfactory receptor OR17-8|olfactory receptor, family 1, subfamily G, member 2 20121230 -9606 8391 OR1P1 - OR17-208|OR1P1P HGNC:8222 17 17p13.3 olfactory receptor, family 1, subfamily P, member 1 (gene/pseudogene) pseudo OR1P1 olfactory receptor, family 1, subfamily P, member 1 (gene/pseudogene) O - 20121230 -9606 8392 OR3A3 - OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P HGNC:8284|Ensembl:ENSG00000159961|HPRD:11413|Vega:OTTHUMG00000090649 17 17p13.3 olfactory receptor, family 3, subfamily A, member 3 protein-coding OR3A3 olfactory receptor, family 3, subfamily A, member 3 O olfactory receptor 17-201|olfactory receptor 3A3|olfactory receptor 3A6|olfactory receptor 3A7|olfactory receptor 3A8|olfactory receptor OR17-22|olfactory receptor, family 3, subfamily A, member 6|olfactory receptor, family 3, subfamily A, member 7|olfactory receptor, family 3, subfamily A, member 8 pseudogene 20121230 -9606 8394 PIP5K1A RP11-68I18.9 - HGNC:8994|MIM:603275|Ensembl:ENSG00000143398|Vega:OTTHUMG00000012351 1 1q21.3 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha protein-coding PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha O 68 kDa type I phosphatidylinositol 4-phosphate 5-kinase alpha|68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha|PIP5K1-alpha|PIP5KIalpha|phosphatidylinositol 4-phosphate 5-kinase type I alpha|phosphatidylinositol 4-phosphate 5-kinase type-1 alpha|phosphatidylinositol-4-phosphate 5-kinase type-1 alpha|ptdIns(4)P-5-kinase 1 alpha 20121230 -9606 8395 PIP5K1B - MSS4|STM7 HGNC:8995|MIM:602745|Ensembl:ENSG00000107242|HPRD:04121|Vega:OTTHUMG00000019976 9 9q13 phosphatidylinositol-4-phosphate 5-kinase, type I, beta protein-coding PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta O PIP5K1-beta|PIP5KIbeta|phosphatidylinositol 4-phosphate 5-kinase type I beta|phosphatidylinositol 4-phosphate 5-kinase type-1 beta|phosphatidylinositol-4-phosphate 5-kinase type-1 beta|protein STM-7|ptdIns(4)P-5-kinase 1 beta|type I phosphatidylinositol 4-phosphate 5-kinase beta|type I phosphatidylinositol-4-phosphate 5-kinase beta 20121230 -9606 8396 PIP4K2B - PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta HGNC:8998|MIM:603261|Ensembl:ENSG00000141720|HPRD:04463|Vega:OTTHUMG00000133119 17 17q12 phosphatidylinositol-5-phosphate 4-kinase, type II, beta protein-coding PIP4K2B phosphatidylinositol-5-phosphate 4-kinase, type II, beta O 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta|1-phosphatidylinositol-4-phosphate kinase|1-phosphatidylinositol-5-phosphate 4-kinase 2-beta|PI(5)P 4-kinase type II beta|PIP4KII-beta|PTDINS(4)P-5-kinase|diphosphoinositide kinase 2-beta|phosphatidylinositol 5-phosphate 4-kinase type II beta|phosphatidylinositol 5-phosphate 4-kinase type-2 beta|phosphatidylinositol-4-phosphate 5-kinase, type II, beta|phosphatidylinositol-5-phosphate 4-kinase type-2 beta|ptdIns(5)P-4-kinase isoform 2-beta 20121230 -9606 8398 PLA2G6 CTA-228A9.2 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta HGNC:9039|MIM:603604|Ensembl:ENSG00000184381|HPRD:04675|Vega:OTTHUMG00000151246 22 22q13.1 phospholipase A2, group VI (cytosolic, calcium-independent) protein-coding PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) O 85 kDa calcium-independent phospholipase A2|85/88 kDa calcium-independent phospholipase A2|GVI PLA2|calcium-independent phospholipase A2|cytosolic, calcium-independent phospholipase A2|group VI phospholipase A2|iPLA2-beta|intracellular membrane-associated calcium-independent phospholipase A2 beta|neurodegeneration with brain iron accumulation 2|patatin-like phospholipase domain containing 9|patatin-like phospholipase domain-containing protein 9 20121230 -9606 8399 PLA2G10 - GXPLA2|GXSPLA2|SPLA2 HGNC:9029|MIM:603603|Ensembl:ENSG00000069764|HPRD:04674|Vega:OTTHUMG00000048069 16 16p13.1-p12 phospholipase A2, group X protein-coding PLA2G10 phospholipase A2, group X O GX sPLA2|group 10 secretory phospholipase A2|group X secretory phospholipase A2|phosphatidylcholine 2-acylhydrolase 10|sPLA2-X 20121230 -9606 8400 SCZD6 - - HGNC:10654|MIM:603013 8 8p21 schizophrenia disorder 6 unknown SCZD6 schizophrenia disorder 6 O - 20121018 -9606 8401 SCZD7 - - HGNC:10655|MIM:603176 13 13q32 schizophrenia disorder 7 unknown SCZD7 schizophrenia disorder 7 O - 20120622 -9606 8402 SLC25A11 - OGC|SLC20A4 HGNC:10981|MIM:604165|Ensembl:ENSG00000108528|HPRD:05003|Vega:OTTHUMG00000099395 17 17p13.3 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 protein-coding SLC25A11 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 O OGCP|mitochondrial 2-oxoglutarate/malate carrier protein|solute carrier family 20 (oxoglutarate carrier), member 4|solute carrier family 25 member 11 20121230 -9606 8403 SOX14 - SOX28 HGNC:11193|MIM:604747|Ensembl:ENSG00000168875|HPRD:16067|Vega:OTTHUMG00000159757 3 3q22-q23 SRY (sex determining region Y)-box 14 protein-coding SOX14 SRY (sex determining region Y)-box 14 O HMG box transcription factor SOX-14|SRY-box 14|transcription factor SOX-14 20121230 -9606 8404 SPARCL1 - PIG33|SC1 HGNC:11220|MIM:606041|Ensembl:ENSG00000152583|HPRD:06919|Vega:OTTHUMG00000130605 4 4q22.1 SPARC-like 1 (hevin) protein-coding SPARCL1 SPARC-like 1 (hevin) O MAST 9|SPARC-like 1 (mast9, hevin)|SPARC-like protein 1|hevin|high endothelial venule protein|mast9|proliferation-inducing protein 33 20121230 -9606 8405 SPOP - TEF2 HGNC:11254|MIM:602650|Ensembl:ENSG00000121067|HPRD:16004|Vega:OTTHUMG00000161496 17 17q21.33 speckle-type POZ protein protein-coding SPOP speckle-type POZ protein O HIB homolog 1|roadkill homolog 1 20121230 -9606 8406 SRPX - DRS|ETX1|SRPX1 HGNC:11309|MIM:300187|Ensembl:ENSG00000101955|HPRD:02175|Vega:OTTHUMG00000021362 X Xp21.1 sushi-repeat containing protein, X-linked protein-coding SRPX sushi-repeat containing protein, X-linked O sushi repeat-containing protein SRPX|sushi-repeat-containing protein, X chromosome|sushi-repeat-containing protein, X-linked 20121230 -9606 8407 TAGLN2 RP11-48O20.1 HA1756 HGNC:11554|MIM:604634|Ensembl:ENSG00000158710|HPRD:06864|Vega:OTTHUMG00000022793 1 1q21-q25 transgelin 2 protein-coding TAGLN2 transgelin 2 O SM22-alpha homolog|epididymis tissue protein Li 7e|transgelin-2 20121230 -9606 8408 ULK1 - ATG1|ATG1A|UNC51|Unc51.1|hATG1 HGNC:12558|MIM:603168|Ensembl:ENSG00000177169|HPRD:11933|Vega:OTTHUMG00000168052 12 12q24.3 unc-51-like kinase 1 (C. elegans) protein-coding ULK1 unc-51-like kinase 1 (C. elegans) O ATG1 autophagy related 1 homolog|autophagy-related protein 1 homolog|serine/threonine-protein kinase ULK1 20121230 -9606 8409 UXT RP1-212G6.2 ART-27|STAP1 HGNC:12641|MIM:300234|Ensembl:ENSG00000126756|HPRD:02209|Vega:OTTHUMG00000021453 X Xp11.23-p11.22 ubiquitously-expressed, prefoldin-like chaperone protein-coding UXT ubiquitously-expressed, prefoldin-like chaperone O SKP2-associated alpha PFD 1|androgen receptor trapped clone 27 protein|protein UXT|ubiquitously expressed transcript protein 20121230 -9606 8410 RPS9P1 - RPS9P|RPS9_2_1730 HGNC:10443 21 21q22.2 ribosomal protein S9 pseudogene 1 pseudo RPS9P1 ribosomal protein S9 pseudogene 1 O - 20121230 -9606 8411 EEA1 - MST105|MSTP105|ZFYVE2 HGNC:3185|MIM:605070|Ensembl:ENSG00000102189|HPRD:05460|Vega:OTTHUMG00000170110 12 12q22 early endosome antigen 1 protein-coding EEA1 early endosome antigen 1 O early endosome antigen 1, 162kD|early endosome-associated protein|endosome-associated protein p162|zinc finger FYVE domain-containing protein 2 20121230 -9606 8412 BCAR3 RP5-1033H22.1 NSP2|SH2D3B HGNC:973|MIM:604704|Ensembl:ENSG00000137936|HPRD:05268|Vega:OTTHUMG00000010301 1 1p22.1 breast cancer anti-estrogen resistance 3 protein-coding BCAR3 breast cancer anti-estrogen resistance 3 O SH2 domain-containing protein 3B|breast cancer anti-estrogen resistance protein 3|breast cancer antiestrogen resistance 3 protein|dJ1033H22.2 (breast cancer anti-estrogen resistance 3)|novel SH2-containing protein 2 20121230 -9606 8416 ANXA9 - ANX31 HGNC:547|MIM:603319|Ensembl:ENSG00000143412|Vega:OTTHUMG00000035063 1 1q21 annexin A9 protein-coding ANXA9 annexin A9 O annexin 31|annexin XXXI|annexin-31|annexin-9|pemphaxin 20121230 -9606 8417 STX7 RP11-560I21.1 - HGNC:11442|MIM:603217|Ensembl:ENSG00000079950|HPRD:04449|Vega:OTTHUMG00000015577 6 6q23.1 syntaxin 7 protein-coding STX7 syntaxin 7 O syntaxin-7 20121230 -9606 8418 CMAHP RP3-425P12.3 CMAH|CSAH HGNC:2098|MIM:603209 6 6p21.32 cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo CMAHP cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene O - 20121230 -9606 8419 BFSP2 - CP47|CP49|LIFL-L|PHAKOSIN HGNC:1041|MIM:603212|Ensembl:ENSG00000170819|HPRD:04444|Vega:OTTHUMG00000159719 3 3q22.1 beaded filament structural protein 2, phakinin protein-coding BFSP2 beaded filament structural protein 2, phakinin O 49 kDa cytoskeletal protein|beaded filament protein CP49|bfps2, Cytoskeletal protein, 49-kD|lens fiber cell beaded filament protein CP 47|lens fiber cell beaded filament protein CP 49|lens intermediate filament-like light|phakinin 20121230 -9606 8420 SNHG3 - NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB HGNC:10118|MIM:603238|Ensembl:ENSG00000242125|Vega:OTTHUMG00000003657 1 1p36.1 small nucleolar RNA host gene 3 (non-protein coding) miscRNA SNHG3 small nucleolar RNA host gene 3 (non-protein coding) O - 20121230 -9606 8422 MEHMO - - HGNC:6999|MIM:300148 X Xp22.13-p21.1 mental retardation, epileptic seizures, hypogonadism and -genitalism, microcephaly and obesity syndrome unknown MEHMO mental retardation, epileptic seizures, hypogonadism and -genitalism, microcephaly and obesity syndrome O - 20120622 -9606 8424 BBOX1 - BBH|BBOX|G-BBH|gamma-BBH HGNC:964|MIM:603312|Ensembl:ENSG00000129151|HPRD:04498|Vega:OTTHUMG00000166121 11 11p14.2 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 protein-coding BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 O gamma-butyrobetaine dioxygenase|gamma-butyrobetaine hydroxylase|gamma-butyrobetaine,2-oxoglutarate dioxygenase 1 20121230 -9606 8425 LTBP4 - LTBP-4|LTBP4L|LTBP4S HGNC:6717|MIM:604710|Ensembl:ENSG00000090006|HPRD:05274 19 19q13.1-q13.2 latent transforming growth factor beta binding protein 4 protein-coding LTBP4 latent transforming growth factor beta binding protein 4 O latent transforming growth factor-beta binding protein 4L|latent-transforming growth factor beta-binding protein 4 20121230 -9606 8427 ZNF282 - HUB1 HGNC:13076|MIM:603397|Ensembl:ENSG00000170265|HPRD:04549|Vega:OTTHUMG00000158974 7 7q36.1 zinc finger protein 282 protein-coding ZNF282 zinc finger protein 282 O HTLV-I U5 repressive element-binding protein 1|HTLV-I U5RE-binding protein 1|HUB-1 20121230 -9606 8428 STK24 RP11-111L24.5 MST3|MST3B|STE20|STK3 HGNC:11403|MIM:604984|Ensembl:ENSG00000102572|HPRD:10385|Vega:OTTHUMG00000017250 13 13q31.2-q32.3 serine/threonine kinase 24 protein-coding STK24 serine/threonine kinase 24 O STE20-like kinase 3|STE20-like kinase MST3|mammalian STE20-like protein kinase 3|serine/threonine kinase 24 (STE20 homolog, yeast)|serine/threonine-protein kinase 24|sterile 20-like kinase 3 20121230 -9606 8431 NR0B2 - SHP|SHP1 HGNC:7961|MIM:604630|Ensembl:ENSG00000131910|HPRD:05219|Vega:OTTHUMG00000004231 1 1p36.1 nuclear receptor subfamily 0, group B, member 2 protein-coding NR0B2 nuclear receptor subfamily 0, group B, member 2 O nuclear receptor SHP|nuclear receptor subfamily 0 group B member 2|orphan nuclear receptor SHP|small heterodimer partner 20121230 -9606 8433 UTF1 - - HGNC:12634|MIM:604130|Ensembl:ENSG00000171794|HPRD:11964|Vega:OTTHUMG00000019302 10 10q26 undifferentiated embryonic cell transcription factor 1 protein-coding UTF1 undifferentiated embryonic cell transcription factor 1 O - 20121230 -9606 8434 RECK - ST15 HGNC:11345|MIM:605227|Ensembl:ENSG00000122707|HPRD:05567|Vega:OTTHUMG00000019898 9 9p13.3 reversion-inducing-cysteine-rich protein with kazal motifs protein-coding RECK reversion-inducing-cysteine-rich protein with kazal motifs O membrane-anchored glycoprotein (metastasis and invasion)|reversion-inducing cysteine-rich protein with Kazal motifs|suppression of tumorigenicity 15 (reversion-inducing-cysteine-rich protein with kazal motifs)|suppression of tumorigenicity 5 (reversion-inducing-cysteine-rich protein with kazal motifs)|suppressor of tumorigenicity 15 protein 20121230 -9606 8435 SOAT2 - ACACT2|ACAT2|ARGP2 HGNC:11178|MIM:601311|Ensembl:ENSG00000167780|HPRD:03202|Vega:OTTHUMG00000169774 12 12q13.13 sterol O-acyltransferase 2 protein-coding SOAT2 sterol O-acyltransferase 2 O ACAT-2|acyl Co-A: cholesterol acyltransferase 2|acyl coenzyme A:cholesterol acyltransferase 2|acyl-CoA:cholesterol acyltransferase 2|acyl-coenzyme A:cholesterol acyltransferase 2|cholesterol acyltransferase 2 20121230 -9606 8436 SDPR - CAVIN2|PS-p68|SDR|cavin-2 HGNC:10690|MIM:606728|Ensembl:ENSG00000168497|HPRD:09470|Vega:OTTHUMG00000154309 2 2q32-q33 serum deprivation response protein-coding SDPR serum deprivation response O phosphatidylserine binding protein|phosphatidylserine-binding protein|serum deprivation-response protein 20121230 -9606 8437 RASAL1 - RASAL HGNC:9873|MIM:604118|Ensembl:ENSG00000111344|HPRD:04986|Vega:OTTHUMG00000169705 12 12q23-q24 RAS protein activator like 1 (GAP1 like) protein-coding RASAL1 RAS protein activator like 1 (GAP1 like) O GAP1 like protein|rasGAP-activating-like protein 1 20121230 -9606 8438 RAD54L - HR54|RAD54A|hHR54|hRAD54 HGNC:9826|MIM:603615|Ensembl:ENSG00000085999|HPRD:04683|Vega:OTTHUMG00000007772 1 1p32 RAD54-like (S. cerevisiae) protein-coding RAD54L RAD54-like (S. cerevisiae) O DNA repair and recombination protein RAD54-like|RAD54 homolog 20121230 -9606 8439 NSMAF - FAN HGNC:8017|MIM:603043|Ensembl:ENSG00000035681|HPRD:09117|Vega:OTTHUMG00000164352 8 8q12-q13 neutral sphingomyelinase (N-SMase) activation associated factor protein-coding NSMAF neutral sphingomyelinase (N-SMase) activation associated factor O factor associated with N-SMase activation|factor associated with neutral sphingomyelinase activation|protein FAN 20121230 -9606 8440 NCK2 - GRB4|NCKbeta HGNC:7665|MIM:604930|Ensembl:ENSG00000071051|HPRD:05378|Vega:OTTHUMG00000153116 2 2q12 NCK adaptor protein 2 protein-coding NCK2 NCK adaptor protein 2 O SH2/SH3 adaptor protein NCK-beta|cytoplasmic protein NCK2|growth factor receptor-bound protein 4|noncatalytic region of tyrosine kinase, beta 20121230 -9606 8443 GNPAT RP5-876B10.1 DAP-AT|DAPAT|DHAPAT HGNC:4416|MIM:602744|Ensembl:ENSG00000116906|HPRD:04120|Vega:OTTHUMG00000038024 1 1q42 glyceronephosphate O-acyltransferase protein-coding GNPAT glyceronephosphate O-acyltransferase O DHAP-AT|acyl-CoA:dihydroxyacetonephosphateacyltransferase|dihydroxyacetone phosphate acyltransferase|glycerone-phosphate O-acyltransferase 20121230 -9606 8444 DYRK3 RP11-343H5.2 DYRK5|RED|REDK|hYAK3-2 HGNC:3094|MIM:603497|Ensembl:ENSG00000143479|HPRD:04607|Vega:OTTHUMG00000036339 1 1q32.1 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 protein-coding DYRK3 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 O dual specificity tyrosine-phosphorylation-regulated kinase 3|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 5|protein kinase Dyrk3|regulatory erythroid kinase 20121230 -9606 8445 DYRK2 - - HGNC:3093|MIM:603496|Ensembl:ENSG00000127334|HPRD:04606|Vega:OTTHUMG00000169089 12 12q15 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 protein-coding DYRK2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 O dual specificity tyrosine-phosphorylation-regulated kinase 2 20121230 -9606 8446 DUSP11 - PIR1 HGNC:3066|MIM:603092|Ensembl:ENSG00000144048|HPRD:04368|Vega:OTTHUMG00000129816 2 2p13.1 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) protein-coding DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) O RNA/RNP complex-1-interacting phosphatase|RNA/RNP complex-interacting phosphatase|dual specificity protein phosphatase 11|phosphatase that interacts with RNA/RNP complex 1|serine/threonine specific protein phosphatase 20121230 -9606 8447 DOC2B - DOC2BL HGNC:2986|MIM:604568|HPRD:05196 17 17p13.3 double C2-like domains, beta protein-coding DOC2B double C2-like domains, beta O doc2-beta|double C2-like domain-containing protein beta 20121230 -9606 8448 DOC2A - Doc2 HGNC:2985|MIM:604567|Ensembl:ENSG00000149927|HPRD:05195|Vega:OTTHUMG00000132109 16 16p11.2 double C2-like domains, alpha protein-coding DOC2A double C2-like domains, alpha O doc2-alpha|double C2-like domain-containing protein alpha 20121230 -9606 8449 DHX16 DADB-129D20.3 DBP2|DDX16|PRO2014|PRP8|PRPF2|Prp2 HGNC:2739|MIM:603405|Ensembl:ENSG00000204560|HPRD:04555|Vega:OTTHUMG00000031060 6 6p21.3 DEAH (Asp-Glu-Ala-His) box polypeptide 16 protein-coding DHX16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 O ATP-dependent RNA helicase #3|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 16|DEAD/H box 16|DEAH-box protein 16|RNA helicase|putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 20121230 -9606 8450 CUL4B - MRXHF2|MRXS15|MRXSC|SFM2 HGNC:2555|MIM:300304|Ensembl:ENSG00000158290|HPRD:02251|Vega:OTTHUMG00000022302 X Xq23 cullin 4B protein-coding CUL4B cullin 4B O CUL-4B|cullin-4B 20121230 -9606 8451 CUL4A RP11-391H12.1 - HGNC:2554|MIM:603137|Ensembl:ENSG00000139842|HPRD:07218|Vega:OTTHUMG00000017384 13 13q34 cullin 4A protein-coding CUL4A cullin 4A O CUL-4A|cullin-4A 20121230 -9606 8452 CUL3 - CUL-3|PHA2E HGNC:2553|MIM:603136|Ensembl:ENSG00000036257|HPRD:09123|Vega:OTTHUMG00000133167 2 2q36.2 cullin 3 protein-coding CUL3 cullin 3 O cullin-3 20121230 -9606 8453 CUL2 RP11-297A16.3 - HGNC:2552|MIM:603135|Ensembl:ENSG00000108094|HPRD:06786|Vega:OTTHUMG00000017950 10 10p11.21 cullin 2 protein-coding CUL2 cullin 2 O CUL-2|cullin-2 20121230 -9606 8454 CUL1 - - HGNC:2551|MIM:603134|Ensembl:ENSG00000055130|HPRD:04389|Vega:OTTHUMG00000152776 7 7q36.1 cullin 1 protein-coding CUL1 cullin 1 O CUL-1|cullin-1 20121230 -9606 8455 ATRN - DPPT-L|MGCA HGNC:885|MIM:603130|Ensembl:ENSG00000088812|HPRD:04388|Vega:OTTHUMG00000031746 20 20p13 attractin protein-coding ATRN attractin O attractin-2|mahogany homolog|mahogany protein 20121230 -9606 8456 FOXN1 - FKHL20|RONU|WHN HGNC:12765|MIM:600838|Ensembl:ENSG00000109101|HPRD:02907|Vega:OTTHUMG00000132603 17 17q11-q12 forkhead box N1 protein-coding FOXN1 forkhead box N1 O Rowett nude|forkhead box protein N1|winged helix nude|winged-helix nude|winged-helix transcription factor nude 20121230 -9606 8458 TTF2 - HuF2 HGNC:12398|MIM:604718|Ensembl:ENSG00000116830|HPRD:05280|Vega:OTTHUMG00000012030 1 1p22 transcription termination factor, RNA polymerase II protein-coding TTF2 transcription termination factor, RNA polymerase II O F2|RNA polymerase II termination factor|human factor 2|lodestar homolog|lodestar protein|transcription release factor 2|transcription termination factor 2 20121230 -9606 8459 TPST2 CTA-445C9.10-003 TANGO13B HGNC:12021|MIM:603126|Ensembl:ENSG00000128294|HPRD:07217|Vega:OTTHUMG00000150987 22 22q12.1 tyrosylprotein sulfotransferase 2 protein-coding TPST2 tyrosylprotein sulfotransferase 2 O TPST-2|protein-tyrosine sulfotransferase 2|transport and golgi organization 13 homolog B|tyrosylprotein phosphotransferase 2|tyrosylprotein sulfotransferase-2 20121230 -9606 8460 TPST1 - TANGO13A HGNC:12020|MIM:603125|Ensembl:ENSG00000169902|HPRD:07216|Vega:OTTHUMG00000023871 7 7q11.21 tyrosylprotein sulfotransferase 1 protein-coding TPST1 tyrosylprotein sulfotransferase 1 O TPST-1|protein-tyrosine sulfotransferase 1|transport and golgi organization 13 homolog A|tyrosylprotein sulfotransferase-1 20121230 -9606 8462 KLF11 - FKLF|FKLF1|MODY7|TIEG2|Tieg3 HGNC:11811|MIM:603301|Ensembl:ENSG00000172059|HPRD:04488|Vega:OTTHUMG00000119004 2 2p25 Kruppel-like factor 11 protein-coding KLF11 Kruppel-like factor 11 O Krueppel-like factor 11|TGFB-inducible early growth response protein 2|TIEG-2|transforming growth factor-beta-inducible early growth response protein 2 20121230 -9606 8463 TEAD2 - ETF|TEAD-2|TEF-4|TEF4 HGNC:11715|MIM:601729|Ensembl:ENSG00000074219 19 19q13.3 TEA domain family member 2 protein-coding TEAD2 TEA domain family member 2 O transcriptional enhancer factor TEF-4 20121230 -9606 8464 SUPT3H RP11-169I2.1 SPT3|SPT3L HGNC:11466|MIM:602947|Ensembl:ENSG00000196284|HPRD:04254|Vega:OTTHUMG00000014773 6 6p21.1-p21.3 suppressor of Ty 3 homolog (S. cerevisiae) protein-coding SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) O SPT3-like protein|transcription initiation protein SPT3 homolog 20121230 -9606 8466 ST11 - PETS1 HGNC:11341|MIM:602011 3 3p25 suppression of tumorigenicity 11 (pancreas) unknown ST11 suppression of tumorigenicity 11 (pancreas) O - 20080828 -9606 8467 SMARCA5 - ISWI|SNF2H|WCRF135|hISWI|hSNF2H HGNC:11101|MIM:603375|Ensembl:ENSG00000153147|HPRD:04538|Vega:OTTHUMG00000161474 4 4q31.1-q31.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 O SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5|sucrose nonfermenting protein 2 homolog|sucrose nonfermenting-like 5 20121230 -9606 8468 FKBP6 - FKBP36|PPIase HGNC:3722|MIM:604839|Ensembl:ENSG00000077800|HPRD:05326|Vega:OTTHUMG00000150520 7 7q11.23 FK506 binding protein 6, 36kDa protein-coding FKBP6 FK506 binding protein 6, 36kDa O 36 kDa FK506-binding protein|36 kDa FKBP|FK506-binding protein 6|FKBP-36|PPIase FKBP6|immunophilin FKBP36|peptidyl-prolyl cis-trans isomerase FKBP6|rotamase 20121230 -9606 8470 SORBS2 - ARGBP2|PRO0618 HGNC:24098|Ensembl:ENSG00000154556|HPRD:12473|Vega:OTTHUMG00000157215 4 4q35.1 sorbin and SH3 domain containing 2 protein-coding SORBS2 sorbin and SH3 domain containing 2 O Arg binding protein 2|Arg/Abl-interacting protein 2|sorbin and SH3 domain-containing protein 2 20121230 -9606 8471 IRS4 - IRS-4|PY160 HGNC:6128|MIM:603510|Ensembl:ENSG00000133124|HPRD:04620|Vega:OTTHUMG00000022181 X Xq22.3 insulin receptor substrate 4 protein-coding IRS4 insulin receptor substrate 4 O 160 kDa phosphotyrosine protein|phosphoprotein of 160 kDa|pp160 20121230 -9606 8473 OGT - HRNT1|O-GLCNAC HGNC:8127|MIM:300255|Ensembl:ENSG00000147162|HPRD:02222|Vega:OTTHUMG00000033316 X Xq13 O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding OGT O-linked N-acetylglucosamine (GlcNAc) transferase O O-GlcNAc transferase p110 subunit|O-GlcNAc transferase subunit p110|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)|O-linked N-acetylglucosamine transferase 110 kDa subunit|UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit|UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase|uridinediphospho-N-acetylglucosamine:polypeptide beta-N-acetylglucosaminyl transferase 20121230 -9606 8476 CDC42BPA RP5-1087E8.4 MRCK|MRCKA|PK428 HGNC:1737|MIM:603412|Ensembl:ENSG00000143776|HPRD:04562|Vega:OTTHUMG00000037618 1 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) protein-coding CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) O CDC42 binidng protein kinase beta|CDC42-binding protein kinase alpha (DMPK-like)|DMPK-like alpha|MRCK alpha|myotonic dystrophy kinase-related CDC42-binding kinase alpha|myotonic dystrophy kinase-related CDC42-binding protein kinase alpha|myotonic dystrophy protein kinase-like alpha|ser-thr protein kinase PK428|ser-thr protein kinase related to the myotonic dystrophy protein kinase|serine/threonine-protein kinase MRCK alpha 20121230 -9606 8477 GPR65 - TDAG8|hTDAG8 HGNC:4517|MIM:604620|Ensembl:ENSG00000140030|HPRD:07057|Vega:OTTHUMG00000028648 14 14q31-q32.1 G protein-coupled receptor 65 protein-coding GPR65 G protein-coupled receptor 65 O G-protein coupled receptor 65|T-cell death-associated gene 8 protein|psychosine receptor 20121230 -9606 8479 HIRIP3 - - HGNC:4917|MIM:603365|Ensembl:ENSG00000149929|HPRD:04531|Vega:OTTHUMG00000132118 16 16p11.2 HIRA interacting protein 3 protein-coding HIRIP3 HIRA interacting protein 3 O HIRA-interacting protein 3 20121230 -9606 8480 RAE1 RP4-800J21.2 MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1 HGNC:9828|MIM:603343|Ensembl:ENSG00000101146|HPRD:11939|Vega:OTTHUMG00000032819 20 20q13.31 RAE1 RNA export 1 homolog (S. pombe) protein-coding RAE1 RAE1 RNA export 1 homolog (S. pombe) O homolog of yeast Rae1 (Bharathi) mRNA-associated protein of 41 kDa (Kraemer)|mRNA export factor|mRNA export protein|mRNA-associated protein MRNP 41|mRNA-binding protein, 41-kD|migration-inducing gene 14|rae1 protein homolog 20121230 -9606 8481 OFD1 - 71-7A|CXorf5|JBTS10|SGBS2 HGNC:2567|MIM:300170|Ensembl:ENSG00000046651|HPRD:02162|Vega:OTTHUMG00000021159 X Xp22 oral-facial-digital syndrome 1 protein-coding OFD1 oral-facial-digital syndrome 1 O oral-facial-digital syndrome 1 protein|protein 71-7A 20121230 -9606 8482 SEMA7A - CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL HGNC:10741|MIM:607961|Ensembl:ENSG00000138623|HPRD:07081|Vega:OTTHUMG00000139000 15 15q22.3-q23 semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) protein-coding SEMA7A semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) O JMH blood group antigen|John Milton Hagen blood group H-Sema K1|john-Milton-Hargen human blood group Ag|sema K1|sema L|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A (JMH blood group)|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, 7A|semaphorin K1|semaphorin L|semaphorin-7A|semaphorin-K1|semaphorin-L 20121230 -9606 8483 CILP UNQ602/PRO1188 CILP-1|HsT18872 HGNC:1980|MIM:603489|Ensembl:ENSG00000138615|HPRD:11942|Vega:OTTHUMG00000133140 15 15q22 cartilage intermediate layer protein, nucleotide pyrophosphohydrolase protein-coding CILP cartilage intermediate layer protein, nucleotide pyrophosphohydrolase O cartilage intermediate layer protein 1|cartilage intermediate layer protein 1 C1|cartilage intermediate layer protein 1 C2|cartilage intermediate-layer protein 20121230 -9606 8484 GALR3 - - HGNC:4134|MIM:603692|Ensembl:ENSG00000128310|HPRD:04736|Vega:OTTHUMG00000150658 22 22q13.1 galanin receptor 3 protein-coding GALR3 galanin receptor 3 O GAL3-R|GALR-3|galanin receptor type 3|galanin receptor, family member 3 20121230 -9606 8487 GEMIN2 - SIP1|SIP1-delta HGNC:10884|MIM:602595|Ensembl:ENSG00000092208|HPRD:03999|Vega:OTTHUMG00000028816 14 14q13 gem (nuclear organelle) associated protein 2 protein-coding GEMIN2 gem (nuclear organelle) associated protein 2 O SMN interacting protein 1-delta|component of gems 2|gem-associated protein 2|gemin-2|survival of motor neuron protein interacting protein 1 20121230 -9606 8488 RPL3P1 - RPL3P|RPL3_8_1731 HGNC:10352 21 21q22.2 ribosomal protein L3 pseudogene 1 pseudo RPL3P1 ribosomal protein L3 pseudogene 1 O - 20121230 -9606 8489 RPL23AP3 - RPL23A_37_1729 HGNC:10320 21 21q22.2 ribosomal protein L23a pseudogene 3 pseudo RPL23AP3 ribosomal protein L23a pseudogene 3 O - 20121230 -9606 8490 RGS5 RP11-430G6.2 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 HGNC:10001|MIM:603276|Ensembl:ENSG00000143248|HPRD:04471|Vega:OTTHUMG00000034441 1 1q23.1 regulator of G-protein signaling 5 protein-coding RGS5 regulator of G-protein signaling 5 O - 20121230 -9606 8491 MAP4K3 - GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 HGNC:6865|MIM:604921|Ensembl:ENSG00000011566|HPRD:05373|Vega:OTTHUMG00000102127 2 2p22.1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 O MAPK/ERK kinase kinase kinase 3|MEK kinase kinase 3|germinal center kinase-like kinase|germinal center kinase-related protein kinase 20121230 -9606 8492 PRSS12 - BSSP-3|BSSP3|MRT1 HGNC:9477|MIM:606709|Ensembl:ENSG00000164099|HPRD:05989|Vega:OTTHUMG00000161166 4 4q28.1 protease, serine, 12 (neurotrypsin, motopsin) protein-coding PRSS12 protease, serine, 12 (neurotrypsin, motopsin) O brain-specific serine protease 3|leydin|neurotrypsin 20121230 -9606 8493 PPM1D - PP2C-DELTA|WIP1 HGNC:9277|MIM:605100|Ensembl:ENSG00000170836|HPRD:05482|Vega:OTTHUMG00000180052 17 17q23.2 protein phosphatase, Mg2+/Mn2+ dependent, 1D protein-coding PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D O protein phosphatase 1D|protein phosphatase 1D magnesium-dependent, delta isoform|protein phosphatase 2C delta isoform|protein phosphatase Wip1|protein phosphatase magnesium-dependent 1 delta|wild-type p53-induced phosphatase 1 20121230 -9606 8495 PPFIBP2 - Cclp1 HGNC:9250|MIM:603142|Ensembl:ENSG00000166387|HPRD:04391|Vega:OTTHUMG00000165617 11 11p15.4 PTPRF interacting protein, binding protein 2 (liprin beta 2) protein-coding PPFIBP2 PTPRF interacting protein, binding protein 2 (liprin beta 2) O liprin-beta-2|protein tyrosine phosphatase receptor type f polypeptide-interacting protein-binding protein 2 20121230 -9606 8496 PPFIBP1 - L2|SGT2|hSGT2|hSgt2p HGNC:9249|MIM:603141|Ensembl:ENSG00000110841|HPRD:04390|Vega:OTTHUMG00000169207 12 12p12.1 PTPRF interacting protein, binding protein 1 (liprin beta 1) protein-coding PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) O PTPRF-interacting protein-binding protein 1|liprin related protein|liprin-beta 1|liprin-beta-1|protein tyrosine phosphatase receptor type f polypeptide-interacting protein-binding protein 1|protein-tyrosine phosphatase receptor-type f polypeptide-interacting protein-binding protein 1 20121230 -9606 8497 PPFIA4 - - HGNC:9248|MIM:603145|Ensembl:ENSG00000143847|HPRD:16012|Vega:OTTHUMG00000042123 1 1q32.1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 protein-coding PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 O Liprin-alpha4|PTPRF-interacting protein alpha-4|liprin alpha4|liprin-alpha-4|protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4 20121230 -9606 8498 RANBP3 - - HGNC:9850|MIM:603327|Ensembl:ENSG00000031823|HPRD:04508|Vega:OTTHUMG00000180636 19 19p13.3 RAN binding protein 3 protein-coding RANBP3 RAN binding protein 3 O RAN-binding protein-3|ran-binding protein 3 20121230 -9606 8499 PPFIA2 - - HGNC:9246|MIM:603143|Ensembl:ENSG00000139220|HPRD:04392|Vega:OTTHUMG00000170181 12 12q21.31 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 protein-coding PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 O PTPRF-interacting protein alpha-2|liprin-alpha 2|liprin-alpha-2|protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-2 20121230 -9606 8500 PPFIA1 - LIP.1|LIP1|LIPRIN HGNC:9245|MIM:611054|Ensembl:ENSG00000131626|HPRD:11451|Vega:OTTHUMG00000167266 11 11q13.3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein-coding PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 O LAR-interacting protein 1|LIP-1|Liprin-alpha1|PTPRF-interacting protein alpha-1|liprin-alpha-1|protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-1 20121230 -9606 8501 SLC43A1 - LAT3|PB39|POV1|R00504 HGNC:9225|MIM:603733|Ensembl:ENSG00000149150|HPRD:07227|Vega:OTTHUMG00000167030 11 11q12.1 solute carrier family 43, member 1 protein-coding SLC43A1 solute carrier family 43, member 1 O L-type amino acid transporter 3|large neutral amino acids transporter small subunit 3|prostate cancer overexpressed gene 1 protein 20121230 -9606 8502 PKP4 - p0071 HGNC:9026|MIM:604276|Ensembl:ENSG00000144283|HPRD:05043|Vega:OTTHUMG00000153969 2 2q24.1 plakophilin 4 protein-coding PKP4 plakophilin 4 O catenin 4|plakophilin-4 20121230 -9606 8503 PIK3R3 RP4-533D7.2 p55|p55-GAMMA HGNC:8981|MIM:606076|Ensembl:ENSG00000117461|HPRD:05831|Vega:OTTHUMG00000008096 1 1p34.1 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) protein-coding PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) O 100% homology to SWISS-PROT Q92569|PI3-kinase regulatory subunit gamma|PI3-kinase subunit p55-gamma|PI3K regulatory subunit gamma|p55PIK|phosphatidylinositol 3-kinase 55 kDa regulatory subunit gamma|phosphatidylinositol 3-kinase regulatory subunit gamma|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)|phosphoinositide-3-kinase, regulatory subunit 3 (p55, gamma)|phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)|ptdIns-3-kinase regulatory subunit gamma|ptdIns-3-kinase regulatory subunit p55-gamma 20121230 -9606 8504 PEX3 RP1-20N2.3 PBD10A|TRG18 HGNC:8858|MIM:603164|Ensembl:ENSG00000034693|HPRD:04407|Vega:OTTHUMG00000015730 6 6q24.2 peroxisomal biogenesis factor 3 protein-coding PEX3 peroxisomal biogenesis factor 3 O peroxin-3|peroxisomal assembly protein PEX3|transformation-related protein 18 20121230 -9606 8505 PARG RP11-507K13.2 PARG99 HGNC:8605|MIM:603501|Ensembl:ENSG00000227345|HPRD:04611|Vega:OTTHUMG00000018201 10 10q11.23 poly (ADP-ribose) glycohydrolase protein-coding PARG poly (ADP-ribose) glycohydrolase O mitochondrial poly(ADP-ribose) glycohydrolase|poly(ADP-ribose) glycohydrolase|poly(ADP-ribose) glycohydrolase 60 kDa isoform 20121230 -9606 8506 CNTNAP1 - CASPR|CNTNAP|NRXN4|P190 HGNC:8011|MIM:602346|Ensembl:ENSG00000108797|HPRD:03825|Vega:OTTHUMG00000180643 17 17q21 contactin associated protein 1 protein-coding CNTNAP1 contactin associated protein 1 O caspr1|contactin-associated protein 1|neurexin 4|neurexin IV|neurexin-4 20121230 -9606 8507 ENC1 - CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10 HGNC:3345|MIM:605173|Ensembl:ENSG00000171617|HPRD:05529|Vega:OTTHUMG00000102059 5 5q13 ectodermal-neural cortex 1 (with BTB-like domain) protein-coding ENC1 ectodermal-neural cortex 1 (with BTB-like domain) O ectoderm-neural cortex protein 1|kelch-like 35|kelch-like protein 37|nuclear matrix protein NRP/B|nuclear restricted protein, BTB domain-like (brain)|p53-induced gene 10 protein|tumor protein p53 inducible protein 10 20121230 -9606 8508 NIPSNAP1 - - HGNC:7827|MIM:603249|Ensembl:ENSG00000184117|HPRD:10342|Vega:OTTHUMG00000151294 22 22q12.2 nipsnap homolog 1 (C. elegans) protein-coding NIPSNAP1 nipsnap homolog 1 (C. elegans) O 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like 1|protein NipSnap homolog 1 20121230 -9606 8509 NDST2 - HSST2|NST2 HGNC:7681|MIM:603268|Ensembl:ENSG00000166507|HPRD:04465|Vega:OTTHUMG00000018489 10 10q22 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 protein-coding NDST2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 O N-HSST 2|N-heparan sulfate sulfotransferase 2|NDST-2|bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2|glucosaminyl N-deacetylase/N-sulfotransferase 2 20121230 -9606 8510 MMP23B RP11-345P4.2 MIFR|MIFR-1|MMP22|MMP23A HGNC:7171|MIM:603321|Ensembl:ENSG00000189409|HPRD:04503|Vega:OTTHUMG00000074713 1 1p36.3 matrix metallopeptidase 23B protein-coding MMP23B matrix metallopeptidase 23B O MMP-21|MMP-22|MMP-23|femalysin|matrix metalloproteinase 22|matrix metalloproteinase 23B|matrix metalloproteinase in the female reproductive tract|matrix metalloproteinase-21|matrix metalloproteinase-22|matrix metalloproteinase-23 20121230 -9606 8511 MMP23A RP1-283E3.1 MIFR|MIFR-1|MMP21 HGNC:7170|MIM:603320|HPRD:04502 1 1p36.33 matrix metallopeptidase 23A (pseudogene) pseudo MMP23A matrix metallopeptidase 23A (pseudogene) O - 20121230 -9606 8512 MBL1P - COLEC3P|MBL1P1 HGNC:6921 10 10q22.3 mannose-binding lectin (protein A) 1, pseudogene pseudo MBL1P mannose-binding lectin (protein A) 1, pseudogene O - 20121230 -9606 8513 LIPF RP11-186O14.1 GL|HGL|HLAL HGNC:6622|MIM:601980|Ensembl:ENSG00000182333|HPRD:09063|Vega:OTTHUMG00000018695 10 10q23.31 lipase, gastric protein-coding LIPF lipase, gastric O gastric lipase|gastric triacylglycerol lipase 20121230 -9606 8514 KCNAB2 RP1-233K16.1 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 HGNC:6229|MIM:601142|Ensembl:ENSG00000069424|HPRD:03090|Vega:OTTHUMG00000000795 1 1p36.3 potassium voltage-gated channel, shaker-related subfamily, beta member 2 protein-coding KCNAB2 potassium voltage-gated channel, shaker-related subfamily, beta member 2 O K(+) channel subunit beta-2|K+ channel beta-2 subunit|potassium channel shaker chain beta 2|voltage-gated potassium channel subunit beta-2 20121230 -9606 8515 ITGA10 UNQ468/PRO827 PRO827 HGNC:6135|MIM:604042|Ensembl:ENSG00000143127|HPRD:04952|Vega:OTTHUMG00000013751 1 1q21 integrin, alpha 10 protein-coding ITGA10 integrin, alpha 10 O integrin alpha-10 20121230 -9606 8516 ITGA8 - - HGNC:6144|MIM:604063|Ensembl:ENSG00000077943|HPRD:10361|Vega:OTTHUMG00000017733 10 10p13 integrin, alpha 8 protein-coding ITGA8 integrin, alpha 8 O integrin alpha-8 20121230 -9606 8517 IKBKG - AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IP|IP1|IP2|IPD2|NEMO HGNC:5961|MIM:300248|Ensembl:ENSG00000073009|HPRD:02217|Vega:OTTHUMG00000024234 X Xq28 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma protein-coding IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma O I-kappa-B kinase subunit gamma|IKKAP1|IKKG|IkB kinase gamma subunit|NF-kappa-B essential modifier|NF-kappa-B essential modulator|NFkappaB essential modulator|ikB kinase subunit gamma|ikB kinase-associated protein 1|incontinentia pigmenti|inhibitor of nuclear factor kappa-B kinase subunit gamma 20121230 -9606 8518 IKBKAP RP11-3J11.4 DYS|ELP1|FD|IKAP|IKI3|TOT1 HGNC:5959|MIM:603722|Ensembl:ENSG00000070061|HPRD:04763|Vega:OTTHUMG00000020465 9 9q31 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein protein-coding IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein O IKK complex-associated protein|elongator acetyltransferase complex subunit 1|elongator complex protein 1|ikappaB kinase complex-associated protein|p150 20121230 -9606 8519 IFITM1 - 9-27|CD225|DSPA2a|IFI17|LEU13 HGNC:5412|MIM:604456|Ensembl:ENSG00000185885|HPRD:05122|Vega:OTTHUMG00000165359 11 11p15.5 interferon induced transmembrane protein 1 protein-coding IFITM1 interferon induced transmembrane protein 1 O dispanin subfamily A member 2a|interferon-induced protein 17|interferon-induced transmembrane protein 1|interferon-inducible protein 9-27|leu-13 antigen 20121230 -9606 8520 HAT1 - KAT1 HGNC:4821|MIM:603053|Ensembl:ENSG00000128708|HPRD:04339|Vega:OTTHUMG00000132282 2 2q31.2-q33.1 histone acetyltransferase 1 protein-coding HAT1 histone acetyltransferase 1 O histone acetyltransferase type B catalytic subunit 20121230 -9606 8521 GCM1 - GCMA|hGCMa HGNC:4197|MIM:603715|Ensembl:ENSG00000137270|HPRD:04757|Vega:OTTHUMG00000014871 6 6p12.1 glial cells missing homolog 1 (Drosophila) protein-coding GCM1 glial cells missing homolog 1 (Drosophila) O GCM motif protein 1|chorion-specific transcription factor GCMa 20121230 -9606 8522 GAS7 - MLL/GAS7 HGNC:4169|MIM:603127|Ensembl:ENSG00000007237|HPRD:16011|Vega:OTTHUMG00000177945 17 17p13.1 growth arrest-specific 7 protein-coding GAS7 growth arrest-specific 7 O MLL/GAS7 fusion protein|growth arrest-specific protein 7 20121230 -9606 8525 DGKZ - DAGK5|DAGK6|DGK-ZETA|hDGKzeta HGNC:2857|MIM:601441|Ensembl:ENSG00000149091|HPRD:03260|Vega:OTTHUMG00000166437 11 11p11.2 diacylglycerol kinase, zeta protein-coding DGKZ diacylglycerol kinase, zeta O DAG kinase zeta|diacylglycerol kinase zeta|diacylglycerol kinase, zeta 104kDa|diglyceride kinase zeta 20121230 -9606 8526 DGKE - DAGK5|DAGK6|DGK HGNC:2852|MIM:601440|Ensembl:ENSG00000153933|HPRD:03259|Vega:OTTHUMG00000178121 17 17q22 diacylglycerol kinase, epsilon 64kDa protein-coding DGKE diacylglycerol kinase, epsilon 64kDa O DAG kinase epsilon|DGK-epsilon|diacylglycerol kinase epsilon|diglyceride kinase epsilon 20121230 -9606 8527 DGKD - DGKdelta|dgkd-2 HGNC:2851|MIM:601826|Ensembl:ENSG00000077044|HPRD:03492|Vega:OTTHUMG00000133290 2 2q37.1 diacylglycerol kinase, delta 130kDa protein-coding DGKD diacylglycerol kinase, delta 130kDa O DAG kinase delta|DGK-delta|diacylglycerol kinase delta|diglyceride kinase delta 20121230 -9606 8528 DDO RP1-261K5.2 DASOX|DDO-1|DDO-2 HGNC:2727|MIM:124450|Ensembl:ENSG00000203797|HPRD:00498|Vega:OTTHUMG00000015360 6 6q21 D-aspartate oxidase protein-coding DDO D-aspartate oxidase O D-aspartate oxidase, DDO|aspartic oxidase 20121230 -9606 8529 CYP4F2 - CPF2 HGNC:2645|MIM:604426|Ensembl:ENSG00000186115|HPRD:05112|Vega:OTTHUMG00000182289 19 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 2 protein-coding CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2 O CYPIVF2|cytochrome P450 4F2|cytochrome P450, subfamily IVF, polypeptide 2|cytochrome P450-LTB-omega|leukotriene B4 omega-hydroxylase|leukotriene-B(4) 20-monooxygenase 1|leukotriene-B(4) omega-hydroxylase 1|leukotriene-B4 20-monooxygenase 20121230 -9606 8530 CST7 - CMAP HGNC:2479|MIM:603253|Ensembl:ENSG00000077984|HPRD:04458|Vega:OTTHUMG00000032108 20 20p11.21 cystatin F (leukocystatin) protein-coding CST7 cystatin F (leukocystatin) O cystatin-7|cystatin-F|cystatin-like metastasis-associated protein|leukocystatin 20121230 -9606 8531 CSDA - CSDA1|DBPA|ZONAB HGNC:2428|MIM:603437|Ensembl:ENSG00000060138|HPRD:10347|Vega:OTTHUMG00000168409 12 12p13.1 cold shock domain protein A protein-coding CSDA cold shock domain protein A O DNA-binding protein A|ZO-1-associated nucleic acid-binding protein|cold shock domain-containing protein A|cold-shock domain containing A1|cold-shock domain protein A|single-strand DNA-binding protein NF-GMB 20121230 -9606 8532 CPZ - - HGNC:2333|MIM:603105|Ensembl:ENSG00000109625|HPRD:04376|Vega:OTTHUMG00000090513 4 4p16.1 carboxypeptidase Z protein-coding CPZ carboxypeptidase Z O metallocarboxypeptidase Z 20121230 -9606 8533 COPS3 - CSN3|SGN3 HGNC:2239|MIM:604665|Ensembl:ENSG00000141030|HPRD:07262|Vega:OTTHUMG00000059281 17 17p11.2 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) protein-coding COPS3 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) O COP9 complex subunit 3|COP9 signalosome complex subunit 3|JAB1-containing signalosome subunit 3|signalosome subunit 3 20121230 -9606 8534 CHST1 - C6ST|GST-1|KS6ST|KSGal6ST|KSST HGNC:1969|MIM:603797|Ensembl:ENSG00000175264|HPRD:07051|Vega:OTTHUMG00000166513 11 11p11.2 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 protein-coding CHST1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 O carbohydrate (chondroitin 6/keratan) sulfotransferase 1|carbohydrate sulfotransferase 1|galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1 20121230 -9606 8535 CBX4 - NBP16|PC2 HGNC:1554|MIM:603079|Ensembl:ENSG00000141582|HPRD:04357|Vega:OTTHUMG00000150415 17 17q25.3 chromobox homolog 4 protein-coding CBX4 chromobox homolog 4 O E3 SUMO-protein ligase CBX4|NS5ATP1-binding protein 16|Pc class 2 homolog|chromobox homolog 4 (Pc class homolog, Drosophila)|chromobox protein homolog 4|polycomb 2 homolog 20121230 -9606 8536 CAMK1 - CAMKI HGNC:1459|MIM:604998|Ensembl:ENSG00000134072|HPRD:05412|Vega:OTTHUMG00000128419 3 3p25.3 calcium/calmodulin-dependent protein kinase I protein-coding CAMK1 calcium/calmodulin-dependent protein kinase I O caM kinase I alpha|caM-KI|caMKI-alpha|calcium/calmodulin-dependent protein kinase type 1 20121230 -9606 8537 BCAS1 - AIBC1|NABC1 HGNC:974|MIM:602968|Ensembl:ENSG00000064787|HPRD:04273|Vega:OTTHUMG00000032772 20 20q13.2 breast carcinoma amplified sequence 1 protein-coding BCAS1 breast carcinoma amplified sequence 1 O amplified and overexpressed in breast cancer|breast carcinoma-amplified sequence 1|novel amplified in breast cancer 1 20121230 -9606 8538 BARX2 - - HGNC:956|MIM:604823|Ensembl:ENSG00000043039|HPRD:16074|Vega:OTTHUMG00000165776 11 11q25 BARX homeobox 2 protein-coding BARX2 BARX homeobox 2 O BarH-like homeobox 2|homeobox protein BarH-like 2 20121230 -9606 8539 API5 MIG8 AAC-11|AAC11 HGNC:594|MIM:609774|Ensembl:ENSG00000166181|HPRD:16500|Vega:OTTHUMG00000166395 11 11p11.2 apoptosis inhibitor 5 protein-coding API5 apoptosis inhibitor 5 O FIF|antiapoptosis clone 11 protein|cell migration-inducing gene 8 protein|fibroblast growth factor 2-interacting factor 2|migration-inducing protein MIG8 20121230 -9606 8540 AGPS AAG5 ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY HGNC:327|MIM:603051|Ensembl:ENSG00000018510|HPRD:04337|Vega:OTTHUMG00000132530 2 2q31.2 alkylglycerone phosphate synthase protein-coding AGPS alkylglycerone phosphate synthase O aging-associated gene 5 protein|aging-associated protein 5|alkyl-DHAP synthase|alkyldihydroxyacetonephosphate synthase, peroxisomal|alkylglycerone-phosphate synthase 20121230 -9606 8541 PPFIA3 - LPNA3 HGNC:9247|MIM:603144|Ensembl:ENSG00000177380|HPRD:04393 19 19q13.33 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein-coding PPFIA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 O PTPRF-interacting protein alpha-3|liprin|liprin-alpha 3|liprin-alpha-3|protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-3|protein tyrosine phosphatase, receptor type, f polypeptide, alpha 3 20121230 -9606 8542 APOL1 RP1-68O2.2 APO-L|APOL|APOL-I|FSGS4 HGNC:618|MIM:603743|Ensembl:ENSG00000100342|HPRD:04774|Vega:OTTHUMG00000030427 22 22q13.1 apolipoprotein L, 1 protein-coding APOL1 apolipoprotein L, 1 O apolipoprotein L1 20121230 -9606 8543 LMO4 - - HGNC:6644|MIM:603129|Ensembl:ENSG00000143013|HPRD:09122|Vega:OTTHUMG00000010248 1 1p22.3 LIM domain only 4 protein-coding LMO4 LIM domain only 4 O LIM domain only protein 4|LIM domain transcription factor LMO4|LMO-4|breast tumor autoantigen 20121230 -9606 8544 PIR - - HGNC:30048|MIM:603329|Ensembl:ENSG00000087842|HPRD:04510|Vega:OTTHUMG00000021176 X Xp22.2 pirin (iron-binding nuclear protein) protein-coding PIR pirin (iron-binding nuclear protein) O pirin|probable quercetin 2,3-dioxygenase PIR|probable quercetinase 20121230 -9606 8545 CGGBP1 - CGGBP|p20-CGGBP HGNC:1888|MIM:603363|Ensembl:ENSG00000163320|HPRD:04529|Vega:OTTHUMG00000159009 3 3p12-p11.1 CGG triplet repeat binding protein 1 protein-coding CGGBP1 CGG triplet repeat binding protein 1 O 20 kDa CGG-binding protein|CGG triplet repeat-binding protein 1|CGG-binding protein 1|p20-CGG binding protein|p20-CGGBP DNA-binding protein 20121230 -9606 8546 AP3B1 - ADTB3|ADTB3A|HPS|HPS2|PE HGNC:566|MIM:603401|Ensembl:ENSG00000132842|HPRD:04551|Vega:OTTHUMG00000106919 5 5q14.1 adaptor-related protein complex 3, beta 1 subunit protein-coding AP3B1 adaptor-related protein complex 3, beta 1 subunit O AP-3 complex beta-3A subunit|AP-3 complex subunit beta-1|adaptor protein complex AP-3 subunit beta-1|beta-3A-adaptin|beta3A-adaptin|clathrin assembly protein complex 3 beta-1 large chain 20121230 -9606 8547 FCN3 RP11-4K3__A.8 FCNH|HAKA1 HGNC:3625|MIM:604973|Ensembl:ENSG00000142748|HPRD:05399|Vega:OTTHUMG00000005722 1 1p36.11 ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen) protein-coding FCN3 ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen) O H-ficolin|collagen/fibrinogen domain-containing lectin 3 p35|collagen/fibrinogen domain-containing protein 3|ficolin 3|ficolin-3 20121230 -9606 8548 BLZF1 RP1-206D15.1 GOLGIN-45|JEM-1|JEM-1s|JEM1 HGNC:1065|MIM:608692|Ensembl:ENSG00000117475|HPRD:16367|Vega:OTTHUMG00000035453 1 1q24 basic leucine zipper nuclear factor 1 protein-coding BLZF1 basic leucine zipper nuclear factor 1 O Golgin-45|JEM-1short protein|cytoplasmic protein|p45 basic leucine-zipper nuclear factor 20121230 -9606 8549 LGR5 - FEX|GPR49|GPR67|GRP49|HG38 HGNC:4504|MIM:606667|Ensembl:ENSG00000139292|HPRD:05979|Vega:OTTHUMG00000169543 12 12q22-q23 leucine-rich repeat containing G protein-coupled receptor 5 protein-coding LGR5 leucine-rich repeat containing G protein-coupled receptor 5 O G-protein coupled receptor 49|G-protein coupled receptor 67|G-protein coupled receptor HG38|leucine-rich repeat-containing G protein-coupled receptor 5|leucine-rich repeat-containing G-protein coupled receptor 5|orphan G protein-coupled receptor HG38 20121230 -9606 8550 MAPKAPK5 - MAPKAP-K5|MK-5|MK5|PRAK HGNC:6889|MIM:606723|Ensembl:ENSG00000089022|HPRD:09467|Vega:OTTHUMG00000169605 12 12q24.13 mitogen-activated protein kinase-activated protein kinase 5 protein-coding MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 O MAP kinase-activated protein kinase 5|MAPK-activated protein kinase 5|MAPKAP kinase 5|MAPKAPK-5|p38-regulated/activated protein kinase 20121230 -9606 8551 INE2 - NCRNA00011 HGNC:6061|MIM:300165 X Xp22.2 inactivation escape 2 (non-protein coding) miscRNA INE2 inactivation escape 2 (non-protein coding) O - 20121230 -9606 8552 INE1 CTD-2522E6.6 NCRNA00010 HGNC:6060|MIM:300164|HPRD:02158 X Xp11.4-p11.3 inactivation escape 1 (non-protein coding) miscRNA INE1 inactivation escape 1 (non-protein coding) O - 20121230 -9606 8553 BHLHE40 - BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 HGNC:1046|MIM:604256|Ensembl:ENSG00000134107|HPRD:16050|Vega:OTTHUMG00000119035 3 3p26 basic helix-loop-helix family, member e40 protein-coding BHLHE40 basic helix-loop-helix family, member e40 O basic helix-loop-helix domain containing, class B, 2|class B basic helix-loop-helix protein 2|class E basic helix-loop-helix protein 40|differentially expressed in chondrocytes 1|differentially expressed in chondrocytes protein 1|differentiated embryo chondrocyte expressed gene 1|enhancer-of-split and hairy-related protein 2|stimulated by retinoic acid gene 13 protein 20121230 -9606 8554 PIAS1 - DDXBP1|GBP|GU/RH-II|ZMIZ3 HGNC:2752|MIM:603566|Ensembl:ENSG00000033800|HPRD:16029|Vega:OTTHUMG00000172645 15 15q protein inhibitor of activated STAT, 1 protein-coding PIAS1 protein inhibitor of activated STAT, 1 O AR interacting protein|DEAD/H (Asp-Glu-Ala-Asp/His) box binding protein 1|DEAD/H box-binding protein 1|E3 SUMO-protein ligase PIAS1|RNA helicase II-binding protein|gu-binding protein|protein inhibitor of activated STAT protein 1|protein inhibitor of activated STAT-1|zinc finger, MIZ-type containing 3 20121230 -9606 8555 CDC14B RP11-172F4.1 CDC14B3|Cdc14B1|Cdc14B2|hCDC14B HGNC:1719|MIM:603505|Ensembl:ENSG00000081377|HPRD:04615|Vega:OTTHUMG00000020300 9 9q22.3 CDC14 cell division cycle 14 homolog B (S. cerevisiae) protein-coding CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) O dual specificity protein phosphatase CDC14B 20121230 -9606 8556 CDC14A - cdc14|hCDC14 HGNC:1718|MIM:603504|Ensembl:ENSG00000079335|HPRD:04614|Vega:OTTHUMG00000010987 1 1p21 CDC14 cell division cycle 14 homolog A (S. cerevisiae) protein-coding CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) O CDC10 (cell division cycle 10, S. cerevisiae, homolog)|dual specificity protein phosphatase CDC14A 20121230 -9606 8557 TCAP - CMD1N|LGMD2G|T-cap|TELE|telethonin HGNC:11610|MIM:604488|Ensembl:ENSG00000173991|HPRD:05133|Vega:OTTHUMG00000133215 17 17q12 titin-cap protein-coding TCAP titin-cap O 19 kDa sarcomeric protein|limb girdle muscular dystrophy 2G (autosomal recessive)|telethonin|titin cap protein 20121230 -9606 8558 CDK10 - PISSLRE HGNC:1770|MIM:603464|Ensembl:ENSG00000185324|Vega:OTTHUMG00000138049 16 16q24 cyclin-dependent kinase 10 protein-coding CDK10 cyclin-dependent kinase 10 O CDC2-related protein kinase|cell division protein kinase 10|cyclin-dependent kinase (CDC2-like) 10|cyclin-dependent kinase related protein|serine/threonine protein kinase PISSLRE|serine/threonine-protein kinase PISSLRE 20121230 -9606 8559 PRPF18 RP11-295P9.7 PRP18|hPrp18 HGNC:17351|MIM:604993|Ensembl:ENSG00000165630|HPRD:05407|Vega:OTTHUMG00000017702 10 10p13 PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) protein-coding PRPF18 PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) O PRP18 homolog|PRP18 pre-mRNA processing factor 18 homolog(PRPF18)|pre-mRNA-splicing factor 18 20121230 -9606 8560 DEGS1 MIG15 DEGS|DEGS-1|DES1|Des-1|FADS7|MLD HGNC:13709|Ensembl:ENSG00000143753|HPRD:13133|Vega:OTTHUMG00000037496 1 1q42.11 delta(4)-desaturase, sphingolipid 1 protein-coding DEGS1 delta(4)-desaturase, sphingolipid 1 O cell migration-inducing gene 15 protein|degenerative spermatocyte homolog 1, lipid desaturase|degenerative spermatocyte homolog, lipid desaturase|dihydroceramide desaturase|membrane fatty acid (lipid) desaturase|membrane lipid desaturase|migration-inducing gene 15 protein|sphingolipid delta 4 desaturase|sphingolipid delta(4)-desaturase 1|sphingolipid delta(4)-desaturase DES1 20121230 -9606 8562 DENR H14 DRP|DRP1|SMAP-3 HGNC:2769|MIM:604550|Ensembl:ENSG00000139726|HPRD:05182|Vega:OTTHUMG00000168844 12 12q24.31 density-regulated protein protein-coding DENR density-regulated protein O smooth muscle cell associated protein-3|smooth muscle cell-associated protein 3 20121230 -9606 8563 THOC5 - C22orf19|Fmip|PK1.3|fSAP79 HGNC:19074|MIM:612733|Ensembl:ENSG00000100296|HPRD:16650|Vega:OTTHUMG00000151291 22 22q12.2 THO complex 5 protein-coding THOC5 THO complex 5 O Fms-interacting protein|NF2/meningioma region protein pK1.3|PP39.2|THO complex subunit 5 homolog|functional spliceosome-associated protein 79|hTREX90|placental protein 39.2 20121230 -9606 8564 KMO RP1-317G22.1 dJ317G22.1 HGNC:6381|MIM:603538|Ensembl:ENSG00000117009|HPRD:04642|Vega:OTTHUMG00000039635 1 1q42-q44 kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) protein-coding KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) O kynurenine 3-hydroxylase|kynurenine 3-monooxygenase 20121230 -9606 8565 YARS - CMTDIC|TYRRS|YRS|YTS HGNC:12840|MIM:603623|Ensembl:ENSG00000134684|HPRD:09153|Vega:OTTHUMG00000003933 1 1p35.1 tyrosyl-tRNA synthetase protein-coding YARS tyrosyl-tRNA synthetase O tyrosine tRNA ligase 1, cytoplasmic|tyrosine--tRNA ligase, cytoplasmic|tyrosyl--tRNA ligase|tyrosyl-tRNA synthetase, cytoplasmic 20121230 -9606 8566 PDXK PRED79 C21orf124|C21orf97|PKH|PNK HGNC:8819|MIM:179020|Ensembl:ENSG00000160209|HPRD:01526|Vega:OTTHUMG00000086870 21 21q22.3 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding PDXK pyridoxal (pyridoxine, vitamin B6) kinase O pyridoxal kinase|pyridoxamine kinase|pyridoxine kinase|vitamin B6 kinase 20121230 -9606 8567 MADD - DENN|IG20|RAB3GEP HGNC:6766|MIM:603584|Ensembl:ENSG00000110514|HPRD:04664|Vega:OTTHUMG00000150350 11 11p11.2 MAP-kinase activating death domain protein-coding MADD MAP-kinase activating death domain O MAP kinase-activating death domain protein|Rab3 GDP/GTP exchange factor|differentially expressed in normal and neoplastic cells|insulinoma glucagonoma clone 20 20121230 -9606 8568 RRP1 - D21S2056E|NNP-1|NOP52|RRP1A HGNC:18785|MIM:610653|Ensembl:ENSG00000160214|HPRD:10857|Vega:OTTHUMG00000086884 21 21q22.3 ribosomal RNA processing 1 homolog (S. cerevisiae) protein-coding RRP1 ribosomal RNA processing 1 homolog (S. cerevisiae) O Nnp1 homolog, nucleolar protein|RRP1-like protein|novel nuclear protein 1|nucleolar protein Nop52|protein NNP-1|ribosomal RNA processing protein 1 homolog A 20121230 -9606 8569 MKNK1 RP11-49P4.3 MNK1 HGNC:7110|MIM:606724|Ensembl:ENSG00000079277|HPRD:09468|Vega:OTTHUMG00000007983 1 1p33 MAP kinase interacting serine/threonine kinase 1 protein-coding MKNK1 MAP kinase interacting serine/threonine kinase 1 O MAP kinase signal-integrating kinase 1|MAP kinase-interacting serine/threonine-protein kinase 1|MAPK signal-integrating kinase 1 20121230 -9606 8570 KHSRP - FBP2|FUBP2|KSRP HGNC:6316|MIM:603445|Ensembl:ENSG00000088247|HPRD:10350 19 19p13.3 KH-type splicing regulatory protein protein-coding KHSRP KH-type splicing regulatory protein O FUSE binding protein 2|FUSE-binding protein 2|KH type-splicing regulatory protein|far upstream element-binding protein 2|p75 20121230 -9606 8572 PDLIM4 - RIL HGNC:16501|MIM:603422|Ensembl:ENSG00000131435|HPRD:04571|Vega:OTTHUMG00000059645 5 5q31.1 PDZ and LIM domain 4 protein-coding PDLIM4 PDZ and LIM domain 4 O LIM domain protein|LIM protein RIL|PDZ and LIM domain protein 4|enigma homolog|reversion-induced LIM protein 20121230 -9606 8573 CASK RP11-540L11.1 CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8 HGNC:1497|MIM:300172|Ensembl:ENSG00000147044|HPRD:02164|Vega:OTTHUMG00000021378 X Xp11.4 calcium/calmodulin-dependent serine protein kinase (MAGUK family) protein-coding CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) O calcium/calmodulin-dependent serine protein kinase membrane-associated guanylate kinase|hCASK|peripheral plasma membrane protein CASK|protein lin-2 homolog|trinucleotide repeat containing 8 20121230 -9606 8574 AKR7A2 - AFAR|AFAR1|AFB1-AR1|AKR7 HGNC:389|MIM:603418|Ensembl:ENSG00000053371|HPRD:04567|Vega:OTTHUMG00000002522 1 1p36.13 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) protein-coding AKR7A2 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) O AFB1 aldehyde reductase 1|AFB1-AR 1|SSA reductase|aflatoxin B1 aldehyde reductase member 2|aflatoxin beta1 aldehyde reductase|aldoketoreductase 7|succinic semialdehyde reductase 20121230 -9606 8575 PRKRA HSD14 DYT16|PACT|RAX HGNC:9438|MIM:603424|Ensembl:ENSG00000180228|HPRD:04573|Vega:OTTHUMG00000132576 2 2q31.2 protein kinase, interferon-inducible double stranded RNA dependent activator protein-coding PRKRA protein kinase, interferon-inducible double stranded RNA dependent activator O PKR-associated protein X|PKR-associating protein X|interferon-inducible double stranded RNA-dependent protein kinase activator A|protein activator of the interferon-induced protein kinase|protein kinase, interferon-inducible double stranded RNA-dependent activator 20121230 -9606 8576 STK16 - KRCT|MPSK|PKL12|TSF1 HGNC:11394|MIM:604719|Ensembl:ENSG00000115661|HPRD:05281|Vega:OTTHUMG00000154520 2 2q35 serine/threonine kinase 16 protein-coding STK16 serine/threonine kinase 16 O TGF-beta-stimulated factor 1|TSF-1|hPSK|myristoylated and palmitoylated serine/threonine-protein kinase|protein kinase PKL12|protein kinase expressed in day 12 fetal liver|serine/threonine-protein kinase 16|tyrosine-protein kinase STK16 20121230 -9606 8577 TMEFF1 - C9orf2|CT120.1|H7365|TR-1 HGNC:11866|MIM:603421|Ensembl:ENSG00000241697|HPRD:04570|Vega:OTTHUMG00000020367 9 9q31 transmembrane protein with EGF-like and two follistatin-like domains 1 protein-coding TMEFF1 transmembrane protein with EGF-like and two follistatin-like domains 1 O cancer/testis antigen family 120, member 1|tomoregulin-1|transmembrane protein with EGF-like and one follistatin-like domain 20121230 -9606 8578 SCARF1 - SREC|SREC-I|SREC1 HGNC:16820|MIM:607873|Ensembl:ENSG00000074660|HPRD:06386|Vega:OTTHUMG00000090555 17 17p13.3 scavenger receptor class F, member 1 protein-coding SCARF1 scavenger receptor class F, member 1 O acetyl LDL receptor|endothelial cells scavenger receptor|scavenger receptor class F member 1|scavenger receptor expressed by endothelial cells 1 20121230 -9606 8580 OR8C1P - OR11-175|OR8C3P|OR8C4P|OR912-106|OR912-45 HGNC:8478 11 11q24.2 olfactory receptor, family 8, subfamily C, member 1 pseudogene pseudo OR8C1P olfactory receptor, family 8, subfamily C, member 1 pseudogene O - 20121230 -9606 8581 LY6D - E48|Ly-6D HGNC:13348|MIM:606204|Ensembl:ENSG00000167656|HPRD:09370|Vega:OTTHUMG00000164693 8 8q24 lymphocyte antigen 6 complex, locus D protein-coding LY6D lymphocyte antigen 6 complex, locus D O e48 antigen|lymphocyte antigen 6D 20121230 -9606 8582 OR8B1P - OR11-561|OR8B11P HGNC:8470 11 11q24.2 olfactory receptor, family 8, subfamily B, member 1 pseudogene pseudo OR8B1P olfactory receptor, family 8, subfamily B, member 1 pseudogene O - 20121230 -9606 8583 OR7E41P - OR11-20|OR7E50P|OR7E95P|OR7F6P|OR8-126|hg84 HGNC:8415 11 11p15.2 olfactory receptor, family 7, subfamily E, member 41 pseudogene pseudo OR7E41P olfactory receptor, family 7, subfamily E, member 41 pseudogene O - 20121230 -9606 8585 OR7E4P - OR11-11a|OR7E9P|OR7F4P|OST289 HGNC:8424 11 11q13 olfactory receptor, family 7, subfamily E, member 4 pseudogene pseudo OR7E4P olfactory receptor, family 7, subfamily E, member 4 pseudogene O - 20121230 -9606 8586 OR7E87P - OR11-261|OR11-9|OR7E3P|OR7F3P HGNC:14709 11 11q13 olfactory receptor, family 7, subfamily E, member 87 pseudogene pseudo OR7E87P olfactory receptor, family 7, subfamily E, member 87 pseudogene O - 20121230 -9606 8587 OR7E2P - OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 HGNC:8402 11 11q14.2 olfactory receptor, family 7, subfamily E, member 2 pseudogene pseudo OR7E2P olfactory receptor, family 7, subfamily E, member 2 pseudogene O - 20121230 -9606 8588 OR7E15P - OR11-392|OR7E42P|OR7E80P|OST001 HGNC:8386 8 8p23.1 olfactory receptor, family 7, subfamily E, member 15 pseudogene pseudo OR7E15P olfactory receptor, family 7, subfamily E, member 15 pseudogene O - 20121230 -9606 8590 OR6A2 - I7|OR11-55|OR6A1|OR6A2P HGNC:15301|MIM:608495|Ensembl:ENSG00000184933|HPRD:09771|Vega:OTTHUMG00000165736 11 11p15 olfactory receptor, family 6, subfamily A, member 2 protein-coding OR6A2 olfactory receptor, family 6, subfamily A, member 2 O hI7 olfactory receptor|hP2 olfactory receptor|olfactory receptor 11-55|olfactory receptor 6A1|olfactory receptor 6A2|olfactory receptor OR11-83|olfactory receptor, family 6, subfamily A, member 1|olfactory receptor, family 6, subfamily A, member 2 pseudogene|seven transmembrane helix receptor 20121230 -9606 8591 OR5G1P - OR11-104|OR5G2P|OR93|OR93HUM HGNC:8344 11 11q12.1 olfactory receptor, family 5, subfamily G, member 1 pseudogene pseudo OR5G1P olfactory receptor, family 5, subfamily G, member 1 pseudogene O - 20121230 -9606 8594 OR5D3P - OR11-8b|OR11-8c|OR5D3|OR5D4 HGNC:8336 11 11q12 olfactory receptor, family 5, subfamily D, member 3 pseudogene pseudo OR5D3P olfactory receptor, family 5, subfamily D, member 3 pseudogene O - 20121230 -9606 8595 OR5D2P - OR11-7a|OR18-17|OR18-42|OR18-43|OR18-44|OR18-79|OR5D10P|OR5D11|OR5D11P|OR5D12|OR5D12P|OR5D1P|OR5D5P|OR5D6P|OR5D7P|OR5D8P|OR5D9P|OR8-125|OR8-127|OR912-47|OR912-91|OR912-94|R5D9P HGNC:8335 11 11q12 olfactory receptor, family 5, subfamily D, member 2 pseudogene pseudo OR5D2P olfactory receptor, family 5, subfamily D, member 2 pseudogene O - 20121230 -9606 8596 OR4A1P - OR11-30|OR4A20P HGNC:8289 11 11p11.12 olfactory receptor, family 4, subfamily A, member 1 pseudogene pseudo OR4A1P olfactory receptor, family 4, subfamily A, member 1 pseudogene O - 20121230 -9606 8600 TNFSF11 RP11-86N24.2 CD254|ODF|OPGL|OPTB2|RANKL|TRANCE|hRANKL2|sOdf HGNC:11926|MIM:602642|Ensembl:ENSG00000120659|HPRD:04031|Vega:OTTHUMG00000016807 13 13q14 tumor necrosis factor (ligand) superfamily, member 11 protein-coding TNFSF11 tumor necrosis factor (ligand) superfamily, member 11 O TNF-related activation-induced cytokine|osteoclast differentiation factor|osteoprotegerin ligand|receptor activator of nuclear factor kappa B ligand|receptor activator of nuclear factor kappa-B ligand|tumor necrosis factor ligand superfamily member 11 20121230 -9606 8601 RGS20 - RGSZ1|ZGAP1 HGNC:14600|MIM:607193|Ensembl:ENSG00000147509|HPRD:06225|Vega:OTTHUMG00000164750 8 8q11.23 regulator of G-protein signaling 20 protein-coding RGS20 regulator of G-protein signaling 20 O g(z)GAP|gz-GAP|gz-selective GTPase-activating protein|regulator of G-protein signaling 20 variant 2|regulator of G-protein signaling Z1|regulator of G-protein signalling 20|regulator of Gz-selective protein signaling 1 20121230 -9606 8602 NOP14 RES4-25 C4orf9|NOL14|RES425|UTP2 HGNC:16821|MIM:611526|Ensembl:ENSG00000087269|HPRD:12827|Vega:OTTHUMG00000159911 4 4p16.3 NOP14 nucleolar protein protein-coding NOP14 NOP14 nucleolar protein O NOP14 homolog|NOP14 nucleolar protein homolog|nucleolar complex protein 14|nucleolar protein 14|nucleolar protein 14 homolog|probable nucleolar complex protein 14 20121230 -9606 8603 FAM193A RES4-22 C4orf8 HGNC:16822|Ensembl:ENSG00000125386|HPRD:09850|Vega:OTTHUMG00000160512 4 4p16.3 family with sequence similarity 193, member A protein-coding FAM193A family with sequence similarity 193, member A O protein FAM193A 20121230 -9606 8604 SLC25A12 - AGC1|ARALAR HGNC:10982|MIM:603667|Ensembl:ENSG00000115840|HPRD:04719|Vega:OTTHUMG00000134290 2 2q24 solute carrier family 25 (aspartate/glutamate carrier), member 12 protein-coding SLC25A12 solute carrier family 25 (aspartate/glutamate carrier), member 12 O araceli hiperlarga|calcium binding mitochondrial carrier superfamily member Aralar1|calcium-binding mitochondrial carrier protein Aralar1|mitochondrial aspartate glutamate carrier 1|solute carrier family 25 (mitochondrial carrier, Aralar), member 12 20121230 -9606 8605 PLA2G4C - CPLA2-gamma HGNC:9037|MIM:603602|Ensembl:ENSG00000105499|HPRD:04673 19 19q13.3 phospholipase A2, group IVC (cytosolic, calcium-independent) protein-coding PLA2G4C phospholipase A2, group IVC (cytosolic, calcium-independent) O cytosolic phospholipase A2 gamma|phospholipase A2 group IVC 20121230 -9606 8607 RUVBL1 - ECP54|INO80H|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A HGNC:10474|MIM:603449|Ensembl:ENSG00000175792|HPRD:09143|Vega:OTTHUMG00000159658 3 3q21 RuvB-like 1 (E. coli) protein-coding RUVBL1 RuvB-like 1 (E. coli) O 49 kDa TATA box-binding protein-interacting protein|49 kDa TBP-interacting protein|54 kDa erythrocyte cytosolic protein|ECP-54|INO80 complex subunit H|NMP 238|RuvB (E coli homolog)-like 1|TAP54-alpha|TATA binding protein interacting protein 49 kDa|TIP60-associated protein 54-alpha|nuclear matrix protein 238|pontin 52|ruvB-like 1 20121230 -9606 8608 RDH16 - RODH-4|SDR9C8 HGNC:29674|Ensembl:ENSG00000139547|HPRD:10208|Vega:OTTHUMG00000170895 12 12q13.3 retinol dehydrogenase 16 (all-trans) protein-coding RDH16 retinol dehydrogenase 16 (all-trans) O microsomal NAD(+)-dependent retinol dehydrogenase 4|microsomal NAD+-dependent retinol dehydrogenase 4|retinol dehydrogenase 16|retinol dehydrogenase 16 (all-trans and 13-cis)|short chain dehydrogenase/reductase family 9C, member 8|sterol/retinol dehydrogenase 20121230 -9606 8609 KLF7 - UKLF HGNC:6350|MIM:604865|Ensembl:ENSG00000118263|HPRD:07279|Vega:OTTHUMG00000132935 2 2q32 Kruppel-like factor 7 (ubiquitous) protein-coding KLF7 Kruppel-like factor 7 (ubiquitous) O Krueppel-like factor 7|ubiquitous Kruppel-like transcription factor 20121230 -9606 8611 PPAP2A - LLP1a|LPP1|PAP-2a|PAP2|PAP2a2|PAP2alpha2|PAPalpha1 HGNC:9228|MIM:607124|Ensembl:ENSG00000067113|HPRD:06178|Vega:OTTHUMG00000162240 5 5q11 phosphatidic acid phosphatase type 2A protein-coding PPAP2A phosphatidic acid phosphatase type 2A O PAP2-alpha|PAP2a|lipid phosphate phosphohydrolase 1|lipid phosphate phosphohydrolase 1a|phosphatidate phosphohydrolase type 2a|phosphatidic acid phosphatase 2a|phosphatidic acid phosphohydrolase type 2a|type 2 phosphatidic acid phosphohydrolase|type-2 phosphatidic acid phosphatase alpha 20121230 -9606 8612 PPAP2C - LPP2|PAP-2c|PAP2-g HGNC:9230|MIM:607126|Ensembl:ENSG00000141934|HPRD:06180|Vega:OTTHUMG00000180530 19 19p13 phosphatidic acid phosphatase type 2C protein-coding PPAP2C phosphatidic acid phosphatase type 2C O PAP2-gamma|PAP2c|lipid phosphate phosphohydrolase 2|phosphatidate phosphohydrolase type 2c|phosphatidic acid phosphatase 2c|phosphatidic acid phosphohydrolase type 2c|type-2 phosphatidic acid phosphatase-gamma 20121230 -9606 8613 PPAP2B - Dri42|LPP3|PAP2B|VCIP HGNC:9229|MIM:607125|Ensembl:ENSG00000162407|HPRD:06179|Vega:OTTHUMG00000008160 1 1p32.2 phosphatidic acid phosphatase type 2B protein-coding PPAP2B phosphatidic acid phosphatase type 2B O PAP2 beta|lipid phosphate phosphohydrolase 3|phosphatidate phosphohydrolase type 2b|type-2 phosphatidic acid phosphatase-beta|vascular endothelial growth factor and type I collagen inducible 20121230 -9606 8614 STC2 - STC-2|STCRP HGNC:11374|MIM:603665|Ensembl:ENSG00000113739|HPRD:04717|Vega:OTTHUMG00000130542 5 5q35.1 stanniocalcin 2 protein-coding STC2 stanniocalcin 2 O STC-related protein|stanniocalcin-2|stanniocalcin-related protein 20121230 -9606 8615 USO1 - P115|TAP|VDP HGNC:30904|MIM:603344|Ensembl:ENSG00000138768|HPRD:09135|Vega:OTTHUMG00000160952 4 4q21.1 USO1 vesicle transport factor protein-coding USO1 USO1 vesicle transport factor O USO1 homolog, vesicle docking protein|USO1 vesicle docking protein homolog|general vesicular transport factor p115|protein USO1 homolog|transcytosis associated protein|vesicle docking protein p115|vesicle-docking protein 20121230 -9606 8618 CADPS - CADPS1|CAPS|CAPS1 HGNC:1426|MIM:604667|Ensembl:ENSG00000163618|HPRD:05236|Vega:OTTHUMG00000158651 3 3p14.2 Ca++-dependent secretion activator protein-coding CADPS Ca++-dependent secretion activator O CAPS-1|Ca2+-dependent activator protein for secretion|Ca2+-dependent secretion activator|Ca2+-regulated cytoskeletal protein|calcium-dependent activator protein for secretion 1|calcium-dependent secretion activator 1 20121230 -9606 8620 NPFF - FMRFAL HGNC:7901|MIM:604643|Ensembl:ENSG00000139574|HPRD:06869|Vega:OTTHUMG00000169856 12 12q13.13 neuropeptide FF-amide peptide precursor protein-coding NPFF neuropeptide FF-amide peptide precursor O FMRFamide-related peptides 20121230 -9606 8621 CDK13 - CDC2L|CDC2L5|CHED|hCDK13 HGNC:1733|MIM:603309|Ensembl:ENSG00000065883|HPRD:04496|Vega:OTTHUMG00000023726 7 7p13 cyclin-dependent kinase 13 protein-coding CDK13 cyclin-dependent kinase 13 O CDC2-related protein kinase 5|cell division cycle 2-like protein kinase 5|cell division protein kinase 13|cholinesterase-related cell division controller 20121230 -9606 8622 PDE8B PIG22 ADSD|PPNAD3 HGNC:8794|MIM:603390|Ensembl:ENSG00000113231|HPRD:04546|Vega:OTTHUMG00000102170 5 5q13.3 phosphodiesterase 8B protein-coding PDE8B phosphodiesterase 8B O 3',5' cyclic nucleotide phosphodiesterase 8B|cell proliferation-inducing gene 22 protein|high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B|hsPDE8B 20121230 -9606 8623 ASMTL RP11-261P4.3 ASMTLX|ASMTLY|ASTML HGNC:751|MIM:300162|MIM:400011|Ensembl:ENSG00000169093|HPRD:02156|Vega:OTTHUMG00000021057 X|Y Xp22.3; Yp11.3 acetylserotonin O-methyltransferase-like protein-coding ASMTL acetylserotonin O-methyltransferase-like O N-acetylserotonin O-methyltransferase-like protein|acetylserotonin N-methyltransferase-like 20121230 -9606 8624 PSMG1 - C21LRP|DSCR2|LRPC21|PAC-1|PAC1 HGNC:3043|MIM:605296|Ensembl:ENSG00000183527|HPRD:05598|Vega:OTTHUMG00000066034 21 21q22.3 proteasome (prosome, macropain) assembly chaperone 1 protein-coding PSMG1 proteasome (prosome, macropain) assembly chaperone 1 O Down syndrome critical region gene 2|Down syndrome critical region protein 2|chromosome 21 leucine-rich protein|leucine rich protein C21-LRP|proteasome assembling chaperone 1|proteasome assembly chaperone 1 20121230 -9606 8625 RFXANK - ANKRA1|BLS|F14150_1|RFX-B HGNC:9987|MIM:603200|Ensembl:ENSG00000064490|HPRD:04435|Vega:OTTHUMG00000169224 19 19p12 regulatory factor X-associated ankyrin-containing protein protein-coding RFXANK regulatory factor X-associated ankyrin-containing protein O DNA-binding protein RFXANK|RFX-Bdelta4|ankyrin repeat family A protein 1|ankyrin repeat-containing regulatory factor X-associated protein|regulatory factor X subunit B 20121230 -9606 8626 TP63 - AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L HGNC:15979|MIM:603273|Ensembl:ENSG00000073282|HPRD:04469|Vega:OTTHUMG00000156313 3 3q28 tumor protein p63 protein-coding TP63 tumor protein p63 O CUSP|amplified in squamous cell carcinoma|chronic ulcerative stomatitis protein|keratinocyte transcription factor KET|transformation-related protein 63|tumor protein 63|tumor protein p53-competing protein|tumor protein p63 deltaN isoform delta 20121230 -9606 8629 JRK - JH8 HGNC:6199|MIM:603210|HPRD:04442 8 8q24.3 jerky homolog (mouse) protein-coding JRK jerky homolog (mouse) O jerky protein homolog 20121230 -9606 8630 HSD17B6 - HSE|RODH|SDR9C6 HGNC:23316|MIM:606623|Ensembl:ENSG00000025423|HPRD:09431|Vega:OTTHUMG00000170854 12 12q13 hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse) protein-coding HSD17B6 hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse) O 17-beta-HSD 6|17-beta-HSD6|17-beta-hydroxysteroid dehydrogenase type 6|3(alpha->beta)-hydroxysteroid epimerase|3(alpha->beta)-hydroxysteroid epimerasel|3-alpha->beta-HSE|3-alpha->beta-hydroxysteroid epimerase|3-hydroxysteroid epimerase|NAD+ -dependent 3 alpha-hydroxysteroid dehydrogenase 3-hydroxysteroid epimerase|oxidative 3-alpha hydroxysteroid dehydrogenase|oxidative 3-alpha-hydroxysteroid-dehydrogenase|oxidoreductase|retinol dehydrogenase|short chain dehydrogenase/reductase family 9C, member 6 20121230 -9606 8631 SKAP1 - SCAP1|SKAP55 HGNC:15605|MIM:604969|Ensembl:ENSG00000141293|HPRD:05396|Vega:OTTHUMG00000178823 17 17q21.32 src kinase associated phosphoprotein 1 protein-coding SKAP1 src kinase associated phosphoprotein 1 O SKAP-55|pp55|src family associated phosphoprotein 1|src family-associated phosphoprotein 1|src kinase-associated phosphoprotein 1|src kinase-associated phosphoprotein of 55 kDa 20121230 -9606 8632 DNAH17 hCG_1813078 DNAHL1|DNEL2 HGNC:2946|MIM:610063|Ensembl:ENSG00000187775|HPRD:16830|Vega:OTTHUMG00000150216 17 17q25.3 dynein, axonemal, heavy chain 17 protein-coding DNAH17 dynein, axonemal, heavy chain 17 O axonemal beta dynein heavy chain 17|axonemal dynein heavy chain|axonemal dynein heavy chain-like protein 1|ciliary dynein heavy chain 17|ciliary dynein heavy chain-like protein 1|dynein heavy chain 17, axonemal|dynein light chain 2, axonemal|dynein, axonemal, heavy chain like 1|dynein, axonemal, heavy like 1|dynein, axonemal, heavy polypeptide 17 20121230 -9606 8633 UNC5C - UNC5H3 HGNC:12569|MIM:603610|Ensembl:ENSG00000182168|HPRD:04678|Vega:OTTHUMG00000130989 4 4q21-q23 unc-5 homolog C (C. elegans) protein-coding UNC5C unc-5 homolog C (C. elegans) O netrin receptor UNC5C|protein unc-5 homolog 3|protein unc-5 homolog C|unc-5 homolog 3|unc5 (C.elegans homolog) c 20121230 -9606 8634 RTCA - RPC|RTC1|RTCD1 HGNC:17981|MIM:611286|Ensembl:ENSG00000137996|HPRD:15280|Vega:OTTHUMG00000010920 1 1p21.2 RNA 3'-terminal phosphate cyclase protein-coding RTCA RNA 3'-terminal phosphate cyclase O RNA terminal phosphate cyclase domain 1|RNA terminal phosphate cyclase domain-containing protein 1|RTC domain-containing protein 1 20121230 -9606 8635 RNASET2 RP11-514O12.3 RNASE6PL|bA514O12.3 HGNC:21686|MIM:612944|Ensembl:ENSG00000026297|Ensembl:ENSG00000249141|HPRD:10197|Vega:OTTHUMG00000016009|Vega:OTTHUMG00000160910 6 6q27 ribonuclease T2 protein-coding RNASET2 ribonuclease T2 O ribonuclease 6 20121230 -9606 8636 SSNA1 - N14|NA-14|NA14 HGNC:11321|MIM:610882|Ensembl:ENSG00000176101|HPRD:10251|Vega:OTTHUMG00000020982 9 9q34.3 Sjogren syndrome nuclear autoantigen 1 protein-coding SSNA1 Sjogren syndrome nuclear autoantigen 1 O Sjoegren syndrome nuclear autoantigen 1|Sjogren's syndrome nuclear autoantigen 1|nuclear autoantigen of 14 kDa 20121230 -9606 8637 EIF4EBP3 - 4E-BP3|4EBP3 HGNC:3290|MIM:603483|Ensembl:ENSG00000243056|HPRD:09149|Vega:OTTHUMG00000129498 5 5q31.3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding EIF4EBP3 eukaryotic translation initiation factor 4E binding protein 3 O eIF4E-binding protein 3|eukaryotic initiation factor 4E-binding protein 3|eukaryotic translation initiation factor 4E-binding protein 3 20121230 -9606 8638 OASL - OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL HGNC:8090|MIM:603281|Ensembl:ENSG00000135114|HPRD:04473|Vega:OTTHUMG00000154981 12 12q24.2 2'-5'-oligoadenylate synthetase-like protein-coding OASL 2'-5'-oligoadenylate synthetase-like O 2'-5'-OAS-RP|2'-5'-OAS-related protein|2'-5'-oligoadenylate synthase-like protein|59 kDa 2'-5'-oligoadenylate synthase-like protein|59 kDa 2'-5'-oligoadenylate synthetase-like protein|TR-interacting protein 14|thyroid receptor-interacting protein 14 20121230 -9606 8639 AOC3 - HPAO|SSAO|VAP-1|VAP1 HGNC:550|MIM:603735|Ensembl:ENSG00000131471|HPRD:04770|Vega:OTTHUMG00000180656 17 17q21 amine oxidase, copper containing 3 (vascular adhesion protein 1) protein-coding AOC3 amine oxidase, copper containing 3 (vascular adhesion protein 1) O copper amine oxidase|membrane primary amine oxidase|semicarbazide-sensitive amine oxidase|vascular adhesion protein 1 20121230 -9606 8641 PCDHGB4 - CDH20|FIB2|PCDH-GAMMA-B4 HGNC:8711|MIM:603058|Ensembl:ENSG00000253953|HPRD:07215|Vega:OTTHUMG00000163686 5 5q31 protocadherin gamma subfamily B, 4 protein-coding PCDHGB4 protocadherin gamma subfamily B, 4 O cadherin 20|cadherin-20|fibroblast cadherin FIB2|fibroblast cadherin-2|protocadherin gamma-B4 20121230 -9606 8642 DCHS1 - CDH25|CDHR6|FIB1|PCDH16 HGNC:13681|MIM:603057|Ensembl:ENSG00000166341|HPRD:04341|Vega:OTTHUMG00000133398 11 11p15.4 dachsous 1 (Drosophila) protein-coding DCHS1 dachsous 1 (Drosophila) O cadherin-19|cadherin-25|cadherin-related family member 6|fibroblast cadherin 1|fibroblast cadherin FIB1|fibroblast cadherin-1|protein dachsous homolog 1|protocadherin 16|protocadherin-16 20121230 -9606 8643 PTCH2 RP11-269F19.8 PTC2 HGNC:9586|MIM:603673|Ensembl:ENSG00000117425|HPRD:04722|Vega:OTTHUMG00000008490 1 1p34.1 patched 2 protein-coding PTCH2 patched 2 O patched homolog 2|protein patched homolog 2 20121230 -9606 8644 AKR1C3 - DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS HGNC:386|MIM:603966|Ensembl:ENSG00000196139|HPRD:04911|Vega:OTTHUMG00000017585 10 10p15-p14 aldo-keto reductase family 1, member C3 protein-coding AKR1C3 aldo-keto reductase family 1, member C3 O 3-alpha hydroxysteroid dehydrogenase, type II|3-alpha-HSD type II, brain|aldo-keto reductase family 1 member C3|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)|chlordecone reductase homolog HAKRb|dihydrodiol dehydrogenase 3|dihydrodiol dehydrogenase X|indanol dehydrogenase|prostaglandin F synthase|testosterone 17-beta-dehydrogenase 5|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase|type IIb 3-alpha hydroxysteroid dehydrogenase 20121230 -9606 8645 KCNK5 - K2p5.1|TASK-2|TASK2 HGNC:6280|MIM:603493|Ensembl:ENSG00000164626|HPRD:04604|Vega:OTTHUMG00000014642 6 6p21 potassium channel, subfamily K, member 5 protein-coding KCNK5 potassium channel, subfamily K, member 5 O K2P5.1 potassium channel|TWIK-related acid-sensitive K(+) channel 2|TWIK-related acid-sensitive K+ channel 2|acid-sensitive potassium channel protein TASK-2|potassium channel subfamily K member 5|potassium channel, subfamily K, member 1 (TASK-2) 20121230 -9606 8646 CHRD UNQ217/PRO243 - HGNC:1949|MIM:603475|Ensembl:ENSG00000090539|HPRD:04592|Vega:OTTHUMG00000141267 3 3q27 chordin protein-coding CHRD chordin O - 20121230 -9606 8647 ABCB11 - ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP HGNC:42|MIM:603201|Ensembl:ENSG00000073734|HPRD:04436|Vega:OTTHUMG00000154039 2 2q24 ATP-binding cassette, sub-family B (MDR/TAP), member 11 protein-coding ABCB11 ATP-binding cassette, sub-family B (MDR/TAP), member 11 O ABC member 16, MDR/TAP subfamily|ATP-binding cassette sub-family B member 11|bile salt export pump|progressive familial intrahepatic cholestasis 2|sister p-glycoprotein 20121230 -9606 8648 NCOA1 - F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 HGNC:7668|MIM:602691|Ensembl:ENSG00000084676|HPRD:04070|Vega:OTTHUMG00000125523 2 2p23 nuclear receptor coactivator 1 protein-coding NCOA1 nuclear receptor coactivator 1 O Hin-2 protein|PAX3/NCOA1 fusion protein|class E basic helix-loop-helix protein 74|renal carcinoma antigen NY-REN-52|steroid receptor coactivator-1 20121230 -9606 8649 LAMTOR3 PRO2783 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 HGNC:15606|MIM:603296|Ensembl:ENSG00000109270|HPRD:04485|Vega:OTTHUMG00000131050 4 4q23 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 O MAPK scaffold protein 1|MEK binding partner 1|late endosomal/lysosomal adaptor and MAPK and MTOR activator 3|mitogen-activated protein kinase kinase 1 interacting protein 1|mitogen-activated protein kinase scaffold protein 1|ragulator complex protein LAMTOR3 20121230 -9606 8650 NUMB - C14orf41|S171|c14_5527 HGNC:8060|MIM:603728|Ensembl:ENSG00000133961|HPRD:04767|Vega:OTTHUMG00000171436 14 14q24.3 numb homolog (Drosophila) protein-coding NUMB numb homolog (Drosophila) O h-Numb|protein numb homolog 20121230 -9606 8651 SOCS1 - CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 HGNC:19383|MIM:603597|Ensembl:ENSG00000185338|HPRD:04669|Vega:OTTHUMG00000129792 16 16p13.13 suppressor of cytokine signaling 1 protein-coding SOCS1 suppressor of cytokine signaling 1 O JAK binding protein|JAK-binding protein|STAT induced SH3 protein 1|STAT-induced STAT inhibitor 1|TIP-3|Tec-interacting protein 3|cytokine-inducible SH2 protein 1 20121230 -9606 8653 DDX3Y - DBY HGNC:2699|MIM:400010|Ensembl:ENSG00000067048|HPRD:02452|Vega:OTTHUMG00000036324 Y Yq11 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked protein-coding DDX3Y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked O ATP-dependent RNA helicase DDX3Y|DEAD box protein 3, Y-chromosomal|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide, Y chromosome 20121230 -9606 8654 PDE5A - CGB-PDE|CN5A|PDE5 HGNC:8784|MIM:603310|Ensembl:ENSG00000138735|HPRD:04497|Vega:OTTHUMG00000132971 4 4q27 phosphodiesterase 5A, cGMP-specific protein-coding PDE5A phosphodiesterase 5A, cGMP-specific O cGMP-binding cGMP-specific 3',5'-cyclic nucleotide phosphodiesterase|cGMP-specific 3',5'-cyclic phosphodiesterase|cGMP-specific phosphodiesterase PDE5A2|cGMP-specific phosphodiesterase type 5A|phosphodiesterase isozyme 5 20121230 -9606 8655 DYNLL1 - DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1 HGNC:15476|MIM:601562|Ensembl:ENSG00000088986|HPRD:03334|Vega:OTTHUMG00000169368 12 12q24.23 dynein, light chain, LC8-type 1 protein-coding DYNLL1 dynein, light chain, LC8-type 1 O 8 kDa dynein light chain|cytoplasmic dynein light polypeptide|dynein light chain 1, cytoplasmic|dynein, cytoplasmic, light polypeptide 1|protein inhibitor of neuronal nitric oxide synthase 20121230 -9606 8658 TNKS - ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 HGNC:11941|MIM:603303|Ensembl:ENSG00000173273|HPRD:04490|Vega:OTTHUMG00000090481 8 8p23.1 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase protein-coding TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase O ADP-ribosyltransferase diphtheria toxin-like 5|TANK1|TNKS-1|TRF1-interacting ankyrin-related ADP-ribose polymerase|poly [ADP-ribose] polymerase 5A|tankyrase I|tankyrase-1 20121230 -9606 8659 ALDH4A1 RP11-128M10.1 ALDH4|P5CD|P5CDh HGNC:406|MIM:606811|Ensembl:ENSG00000159423|HPRD:06009|Vega:OTTHUMG00000002443 1 1p36 aldehyde dehydrogenase 4 family, member A1 protein-coding ALDH4A1 aldehyde dehydrogenase 4 family, member A1 O P5C dehydrogenase|aldehyde dehydrogenase family 4 member A1|delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial|mitochondrial delta-1-pyrroline 5-carboxylate dehydrogenase 20121230 -9606 8660 IRS2 - IRS-2 HGNC:6126|MIM:600797|Ensembl:ENSG00000185950|HPRD:02878|Vega:OTTHUMG00000017338 13 13q34 insulin receptor substrate 2 protein-coding IRS2 insulin receptor substrate 2 O - 20121230 -9606 8661 EIF3A - EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 HGNC:3271|MIM:602039|Ensembl:ENSG00000107581|HPRD:03618|Vega:OTTHUMG00000019144 10 10q26 eukaryotic translation initiation factor 3, subunit A protein-coding EIF3A eukaryotic translation initiation factor 3, subunit A O EIF3, p180 subunit|centrosomin homolog|cytoplasmic protein p167|eIF-3-theta|eIF3 p167|eIF3 p180|eIF3 p185|eukaryotic translation initiation factor 3 subunit 10|eukaryotic translation initiation factor 3 subunit A|eukaryotic translation initiation factor 3, subunit 10 (theta, 150/170kD)|eukaryotic translation initiation factor 3, subunit 10 (theta, 170kD)|eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa|eukaryotic translation initiation factor 3, subunit 10, 170kD 20121230 -9606 8662 EIF3B - EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 HGNC:3280|MIM:603917|Ensembl:ENSG00000106263|HPRD:06795|Vega:OTTHUMG00000022839 7 7p22.3 eukaryotic translation initiation factor 3, subunit B protein-coding EIF3B eukaryotic translation initiation factor 3, subunit B O eIF-3-eta|eIF3 p110|eIF3 p116|eukaryotic translation initiation factor 3 subunit 9|eukaryotic translation initiation factor 3 subunit B|eukaryotic translation initiation factor 3, subunit 9 (eta, 116kD)|eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa|hPrt1|prt1 homolog 20121230 -9606 8663 EIF3C - EIF3CL|EIF3S8|eIF3-p110 HGNC:3279|MIM:603916|Ensembl:ENSG00000184110|HPRD:04889|Vega:OTTHUMG00000099443 16 16p11.2 eukaryotic translation initiation factor 3, subunit C protein-coding EIF3C eukaryotic translation initiation factor 3, subunit C O cell migration-inducing protein 17|eIF3 p110|eukaryotic translation initiation factor 3 subunit 8|eukaryotic translation initiation factor 3 subunit C|eukaryotic translation initiation factor 3, subunit 8 (110kD)|eukaryotic translation initiation factor 3, subunit 8, 110kDa 20121230 -9606 8664 EIF3D RP5-1119A7.12-003 EIF3S7|eIF3-p66|eIF3-zeta HGNC:3278|MIM:603915|Ensembl:ENSG00000100353|HPRD:04888|Vega:OTTHUMG00000150599 22 22q13.1 eukaryotic translation initiation factor 3, subunit D protein-coding EIF3D eukaryotic translation initiation factor 3, subunit D O eIF-3-zeta|eIF3 p66|eukaryotic translation initiation factor 3 subunit 7|eukaryotic translation initiation factor 3 subunit D|eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa|translation initiation factor eIF3 p66 subunit 20121230 -9606 8665 EIF3F - EIF3S5|eIF3-p47 HGNC:3275|MIM:603914|Ensembl:ENSG00000175390|HPRD:04887|Vega:OTTHUMG00000165675 11 11p15.4 eukaryotic translation initiation factor 3, subunit F protein-coding EIF3F eukaryotic translation initiation factor 3, subunit F O deubiquitinating enzyme eIF3f|eIF-3-epsilon|eIF3-epsilon|eukaryotic translation initiation factor 3 subunit F|eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD)|eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa 20121230 -9606 8666 EIF3G - EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44 HGNC:3274|MIM:603913|Ensembl:ENSG00000130811|HPRD:04886|Vega:OTTHUMG00000180396 19 19p13.2 eukaryotic translation initiation factor 3, subunit G protein-coding EIF3G eukaryotic translation initiation factor 3, subunit G O eIF-3 RNA-binding subunit|eIF-3-delta|eIF3 p42|eIF3 p44|eukaryotic translation initiation factor 3 RNA-binding subunit|eukaryotic translation initiation factor 3 subunit 4|eukaryotic translation initiation factor 3 subunit G|eukaryotic translation initiation factor 3 subunit p42|eukaryotic translation initiation factor 3, subunit 4 (delta, 44kD)|eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa 20121230 -9606 8667 EIF3H - EIF3S3|eIF3-gamma|eIF3-p40 HGNC:3273|MIM:603912|Ensembl:ENSG00000147677|HPRD:04885|Vega:OTTHUMG00000164919 8 8q24.11 eukaryotic translation initiation factor 3, subunit H protein-coding EIF3H eukaryotic translation initiation factor 3, subunit H O eIF-3-gamma|eIF3 p40 subunit|eukaryotic translation initiation factor 3 subunit 3|eukaryotic translation initiation factor 3 subunit H|eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD)|eukaryotic translation initiation factor 3, subunit 3 (gamma, 40kD)|eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa 20121230 -9606 8668 EIF3I RP4-675E8.1 EIF3S2|PRO2242|TRIP-1|TRIP1|eIF3-beta|eIF3-p36 HGNC:3272|MIM:603911|Ensembl:ENSG00000084623|HPRD:04884|Vega:OTTHUMG00000007364 1 1p34.1 eukaryotic translation initiation factor 3, subunit I protein-coding EIF3I eukaryotic translation initiation factor 3, subunit I O TGF-beta receptor-interacting protein 1|TGFbeta receptor-interacting protein 1|eIF-3-beta|eIF3 p36|eukaryotic translation initiation factor 3 subunit 2|eukaryotic translation initiation factor 3 subunit I|eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD)|eukaryotic translation initiation factor 3, subunit 2 beta, 36kDa|predicted protein of HQ2242 20121230 -9606 8669 EIF3J PRO0391 EIF3S1|eIF3-alpha|eIF3-p35 HGNC:3270|MIM:603910|Ensembl:ENSG00000104131|HPRD:04883|Vega:OTTHUMG00000131158 15 15q21.1 eukaryotic translation initiation factor 3, subunit J protein-coding EIF3J eukaryotic translation initiation factor 3, subunit J O eIF-3-alpha|eIF3 p35|eukaryotic translation initiation factor 3 subunit 1|eukaryotic translation initiation factor 3 subunit J|eukaryotic translation initiation factor 3, subunit 1 (alpha, 35kD)|eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa 20121230 -9606 8671 SLC4A4 - HNBC1|KNBC|NBC1|NBC2|SLC4A5|hhNMC|pNBC HGNC:11030|MIM:603345|Ensembl:ENSG00000080493|HPRD:04516|Vega:OTTHUMG00000129907 4 4q21 solute carrier family 4, sodium bicarbonate cotransporter, member 4 protein-coding SLC4A4 solute carrier family 4, sodium bicarbonate cotransporter, member 4 O Na(+)/HCO3(-) cotransporter|electrogenic sodium bicarbonate cotransporter 1|kNBC1|sodium bicarbonate cotransporter 1 (sodium bicarbonate cotransporter, kidney; sodium bicarbonate cotransporter, pancreas)|solute carrier family 4, sodium bicarbonate cotransporter, member 4, brain type|solute carrier family 4, sodium bicarbonate cotransporter, member 5 20121230 -9606 8672 EIF4G3 RP11-190H11.1 eIF-4G 3|eIF4G 3|eIF4GII HGNC:3298|MIM:603929|Ensembl:ENSG00000075151|HPRD:06802|Vega:OTTHUMG00000002624 1 1p36.12 eukaryotic translation initiation factor 4 gamma, 3 protein-coding EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 O eIF-4-gamma 3|eIF-4-gamma II|eukaryotic translation initiation factor 4 gamma 3 20121230 -9606 8673 VAMP8 - EDB|VAMP-8 HGNC:12647|MIM:603177|Ensembl:ENSG00000118640|HPRD:04415|Vega:OTTHUMG00000130180 2 2p12-p11.2 vesicle-associated membrane protein 8 protein-coding VAMP8 vesicle-associated membrane protein 8 O vesicle-associated membrane protein 8 (endobrevin) 20121230 -9606 8674 VAMP4 RP4-560B9.3 VAMP-4|VAMP24 HGNC:12645|MIM:606909|Ensembl:ENSG00000117533|HPRD:06070|Vega:OTTHUMG00000034788 1 1q24-q25 vesicle-associated membrane protein 4 protein-coding VAMP4 vesicle-associated membrane protein 4 O - 20121230 -9606 8675 STX16 RP11-261P9.3 SYN16 HGNC:11431|MIM:603666|Ensembl:ENSG00000124222|HPRD:04718|Vega:OTTHUMG00000033084 20 20q13.32 syntaxin 16 protein-coding STX16 syntaxin 16 O syntaxin-16 20121230 -9606 8676 STX11 - FHL4|HLH4|HPLH4 HGNC:11429|MIM:605014|Ensembl:ENSG00000135604|HPRD:09231|Vega:OTTHUMG00000015739 6 6q24.2 syntaxin 11 protein-coding STX11 syntaxin 11 O syntaxin-11 20121230 -9606 8677 STX10 - SYN10|hsyn10 HGNC:11428|MIM:603765|Ensembl:ENSG00000104915|HPRD:04791|Vega:OTTHUMG00000180759 19 19p13.2 syntaxin 10 protein-coding STX10 syntaxin 10 O syntaxin-10 20121230 -9606 8678 BECN1 - ATG6|VPS30|beclin1 HGNC:1034|MIM:604378|Ensembl:ENSG00000126581|HPRD:05087|Vega:OTTHUMG00000180653 17 17q21 beclin 1, autophagy related protein-coding BECN1 beclin 1, autophagy related O ATG6 autophagy related 6 homolog|beclin 1 (coiled-coil, moesin-like BCL2 interacting protein)|beclin 1 (coiled-coil, moesin-like BCL2-interacting protein)|beclin-1|coiled-coil myosin-like BCL2-interacting protein 20121230 -9606 8681 JMJD7-PLA2G4B - HsT16992|cPLA2-beta HGNC:34449|Ensembl:ENSG00000168970|HPRD:07306|Vega:OTTHUMG00000044442 15 15q11.2-q21.3 JMJD7-PLA2G4B readthrough protein-coding JMJD7-PLA2G4B JMJD7-PLA2G4B readthrough O JMJD7-PLA2G4B protein|jumonji domain containing 7-phospholipase A2, group IVB (cytosolic) read-through 20121230 -9606 8682 PEA15 RP11-536C5.8 HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED HGNC:8822|MIM:603434|Ensembl:ENSG00000162734|HPRD:04579|Vega:OTTHUMG00000031605 1 1q21.1 phosphoprotein enriched in astrocytes 15 protein-coding PEA15 phosphoprotein enriched in astrocytes 15 O 15 kDa phosphoprotein enriched in astrocytes|Phosphoprotein enriched in astrocytes, 15kD|astrocytic phosphoprotein PEA-15|homolog of mouse MAT-1 oncogene|phosphoprotein enriched in diabetes 20121230 -9606 8683 SRSF9 - SFRS9|SRp30c HGNC:10791|MIM:601943|Ensembl:ENSG00000111786|HPRD:09053|Vega:OTTHUMG00000047790 12 12q24.31 serine/arginine-rich splicing factor 9 protein-coding SRSF9 serine/arginine-rich splicing factor 9 O SR splicing factor 9|pre-mRNA-splicing factor SRp30C|splicing factor, arginine/serine-rich 9 20121230 -9606 8685 MARCO - SCARA2 HGNC:6895|MIM:604870|Ensembl:ENSG00000019169|HPRD:05337|Vega:OTTHUMG00000131400 2 2q14.2 macrophage receptor with collagenous structure protein-coding MARCO macrophage receptor with collagenous structure O macrophage receptor MARCO|scavenger receptor class A member 2|scavenger receptor class A, member 2 20121230 -9606 8686 KRT41P - KRTHAP1 HGNC:6457 17 17q12-q21 keratin 41 pseudogene pseudo KRT41P keratin 41 pseudogene O - 20121230 -9606 8687 KRT38 - HA8|KRTHA8|hHa8 HGNC:6456|MIM:604542|Ensembl:ENSG00000171360|HPRD:05176|Vega:OTTHUMG00000133439 17 17q12-q21 keratin 38 protein-coding KRT38 keratin 38 O K38|hair keratin, type I Ha8|keratin, hair, acidic, 8|keratin, type I cuticular Ha8|keratin-38 20121230 -9606 8688 KRT37 - HA7|K37|KRTHA7 HGNC:6455|MIM:604541|Ensembl:ENSG00000108417|HPRD:05175|Vega:OTTHUMG00000133606 17 17q12-q21 keratin 37 protein-coding KRT37 keratin 37 O hair keratin, type I Ha7|keratin, hair, acidic, 7|keratin, type I cuticular Ha7|keratin-37 20121230 -9606 8689 KRT36 - HA6|KRTHA6|hHa6 HGNC:6454|MIM:604540|Ensembl:ENSG00000126337|HPRD:05174|Vega:OTTHUMG00000133431 17 17q12-q21 keratin 36 protein-coding KRT36 keratin 36 O K36|hair keratin, type I Ha6|keratin, hair, acidic, 6|keratin, type I cuticular Ha6|keratin-36 20121230 -9606 8690 JRKL - HHMJG HGNC:6200|MIM:603211|Ensembl:ENSG00000183340|HPRD:04443|Vega:OTTHUMG00000154950 11 11q21 jerky homolog-like (mouse) protein-coding JRKL jerky homolog-like (mouse) O human homolog of mouse jerky gene protein|jerky protein homolog-like 20121230 -9606 8691 IDDM17 - - HGNC:5371|MIM:603266 10 10q25 insulin-dependent diabetes mellitus 17 unknown IDDM17 insulin-dependent diabetes mellitus 17 O - 20120622 -9606 8692 HYAL2 - LUCA2 HGNC:5321|MIM:603551|Ensembl:ENSG00000068001|HPRD:04649|Vega:OTTHUMG00000156876 3 3p21.3 hyaluronoglucosaminidase 2 protein-coding HYAL2 hyaluronoglucosaminidase 2 O PH-20 homolog|PH20 homolog|hyal-2|hyaluronidase 2|hyaluronidase-2|hyaluronoglucosaminidase-2|lung carcinoma protein 2|lysosomal hyaluronidase 20121230 -9606 8693 GALNT4 - GALNAC-T4|GALNACT4 HGNC:4126|MIM:603565|Ensembl:ENSG00000257594|HPRD:09152|Vega:OTTHUMG00000166292 12 12q21.33 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) protein-coding GALNT4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) O UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 4|polypeptide GalNAc transferase 4|polypeptide N-acetylgalactosaminyltransferase 4|pp-GaNTase 4|protein-UDP acetylgalactosaminyltransferase 4 20121230 -9606 8694 DGAT1 hCG_24006 ARAT|ARGP1|DGAT HGNC:2843|MIM:604900|Ensembl:ENSG00000185000|HPRD:05360|Vega:OTTHUMG00000165135 8 8q24.3 diacylglycerol O-acyltransferase 1 protein-coding DGAT1 diacylglycerol O-acyltransferase 1 O ACAT related gene product 1|ACAT-related gene product 1|acyl coenzyme A:cholesterol acyltransferase related gene 1|acyl-CoA retinol O-fatty-acyltransferase|diacylglycerol O-acyltransferase homolog 1|diglyceride acyltransferase|retinol O-fatty-acyltransferase 20121230 -9606 8697 CDC23 - ANAPC8|APC8|CUT23 HGNC:1724|MIM:603462|Ensembl:ENSG00000094880|HPRD:07221|Vega:OTTHUMG00000129198 5 5q31 cell division cycle 23 homolog (S. cerevisiae) protein-coding CDC23 cell division cycle 23 homolog (S. cerevisiae) O anaphase promoting complex subunit 8|anaphase-promoting complex subunit 8|cell division cycle protein 23 homolog|cyclosome subunit 8 20121230 -9606 8698 S1PR4 - EDG6|LPC1|S1P4|SLP4 HGNC:3170|MIM:603751|Ensembl:ENSG00000125910|HPRD:04779|Vega:OTTHUMG00000180672 19 19p13.3 sphingosine-1-phosphate receptor 4 protein-coding S1PR4 sphingosine-1-phosphate receptor 4 O S1P receptor 4|S1P receptor Edg-6|endothelial differentiation G-protein coupled receptor 6|endothelial differentiation, G protein coupled receptor 6|endothelial differentiation, G-protein-coupled receptor 6|endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 6|sphingosine 1-phosphate receptor 4|sphingosine 1-phosphate receptor Edg-6 20121230 -9606 8701 DNAH11 - CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 HGNC:2942|MIM:603339|Ensembl:ENSG00000105877|HPRD:09134 7 7p21 dynein, axonemal, heavy chain 11 protein-coding DNAH11 dynein, axonemal, heavy chain 11 O axonemal beta dynein heavy chain 11|axonemal dynein heavy chain 11|ciliary dynein heavy chain 11|dynein heavy chain 11, axonemal|dynein, axonemal, heavy polypeptide 11|dynein, ciliary, heavy chain 11 20121230 -9606 8702 B4GALT4 UNQ552/PRO1109 B4Gal-T4|beta4Gal-T4 HGNC:927|MIM:604015|Ensembl:ENSG00000121578|HPRD:04930|Vega:OTTHUMG00000159358 3 3q13.3 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 protein-coding B4GALT4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 O UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4|UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4|beta-1,4-GalTase 4|beta-1,4-galactosyltransferase 4|beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase 4 20121230 -9606 8703 B4GALT3 - beta4Gal-T3 HGNC:926|MIM:604014|Ensembl:ENSG00000158850|HPRD:04929|Vega:OTTHUMG00000034348 1 1q21-q23 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 protein-coding B4GALT3 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 O UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3|UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3|b4Gal-T3|beta-1,4-GalTase 3|beta-1,4-galactosyltransferase 3|beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase 3 20121230 -9606 8704 B4GALT2 - B4Gal-T2|B4Gal-T3|beta4Gal-T2 HGNC:925|MIM:604013|Ensembl:ENSG00000117411|HPRD:04928|Vega:OTTHUMG00000008296 1 1p34-p33 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 protein-coding B4GALT2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 O UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 2|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 2|UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 2|beta-1,4-GalTase 2|beta-1,4-galactosyltransferase 2|beta-4-GalT2|beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase 2 20121230 -9606 8705 B3GALT4 DADB-159G18.4 BETA3GALT4|GALT2|GALT4 HGNC:919|MIM:603095|Ensembl:ENSG00000235863|HPRD:04370|Vega:OTTHUMG00000031100 6 6p21.3 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 protein-coding B3GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 O UDP-galactose:beta-N-acetyl-galactosamine-beta-1,3-galactosyltransferase|b3Gal-T4|beta-1,3-GalTase 4|beta-1,3-galactosyltransferase 4|beta-3-galactosyltransferase 4|gal-T2|ganglioside galactosyltransferase 20121230 -9606 8706 B3GALNT1 UNQ531/PRO1074 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 HGNC:918|MIM:603094|Ensembl:ENSG00000169255|HPRD:09119|Vega:OTTHUMG00000159064 3 3q25 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) O P antigen synthase|P blood group globoside|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 3 (Globoside blood group)|UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1|UDP-GalNAc:betaGlcNAc beta-1,3-galactosaminyltransferase, polypeptide 1 (Globoside blood group)|UDP-N-acetylgalactosamine:globotriaosylceramide beta-1,3-N-acetylgalactosaminyltransferase|b3Gal-T3|beta-1,3-GalNAc-T1|beta-1,3-GalTase 3|beta-1,3-galactosyltransferase 3|beta-3-Gx-T3|beta3GalT3|brainiac1|galactosylgalactosylglucosylceramide beta-D-acetyl-galactosaminyltransferase|globoside synthase|globotriaosylceramide 3-beta-N-acetylgalactosaminyltransferase 20121230 -9606 8707 B3GALT2 - BETA3GALT2|GLCT2|beta3Gal-T2 HGNC:917|MIM:603018|Ensembl:ENSG00000162630|HPRD:04313|Vega:OTTHUMG00000035687 1 1q31 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding B3GALT2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 O UDP-galactose:2-acetamido-2-deoxy-D-glucose 3beta-galactosyltransferase 2|beta-1,3-GalTase 2|beta-1,3-galactosyltransferase 2|beta-3-galt2 20121230 -9606 8708 B3GALT1 - beta3Gal-T1 HGNC:916|MIM:603093|Ensembl:ENSG00000172318|HPRD:04369 2 2q24.3 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 protein-coding B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 O UDP-galactose:beta-N-acetyl-glucosamine-beta-1,3-galactosyltransferase 1|beta-1,3-GalTase 1|beta-1,3-galactosyltransferase 1|beta-3-galt1|beta3GalT1 20121230 -9606 8710 SERPINB7 - MEGSIN|TP55 HGNC:13902|MIM:603357|Ensembl:ENSG00000166396|HPRD:04524|Vega:OTTHUMG00000060591 18 18q21.33 serpin peptidase inhibitor, clade B (ovalbumin), member 7 protein-coding SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7 O mesangium predominant gene, megsin|serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 7|serpin B7 20121230 -9606 8711 TNK1 - - HGNC:11940|MIM:608076|Ensembl:ENSG00000174292|HPRD:09730|Vega:OTTHUMG00000178174 17 17p13.1 tyrosine kinase, non-receptor, 1 protein-coding TNK1 tyrosine kinase, non-receptor, 1 O CD38 negative kinase 1|non-receptor tyrosine-protein kinase TNK1 20121230 -9606 8712 PAGE1 - AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1 HGNC:4107|MIM:300288|Ensembl:ENSG00000068985|HPRD:02240|Vega:OTTHUMG00000033224 X Xp11.23 P antigen family, member 1 (prostate associated) protein-coding PAGE1 P antigen family, member 1 (prostate associated) O G antigen 9|G antigen family B member 1|G antigen, family B, 1 (prostate associated)|prostate associated gene 1|prostate-associated gene 1 protein 20121230 -9606 8714 ABCC3 - ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 HGNC:54|MIM:604323|Ensembl:ENSG00000108846|HPRD:06826|Vega:OTTHUMG00000162245 17 17q22 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 protein-coding ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 O ATP-binding cassette sub-family C member 3|canalicular multispecific organic anion transporter 2|canicular multispecific organic anion transporter|multi-specific organic anion transporter D|multidrug resistance associated protein|multidrug resistance-associated protein 3 20121230 -9606 8715 NOL4 HRIHFB2255 CT125|NOLP HGNC:7870|MIM:603577|Ensembl:ENSG00000101746|HPRD:04657|Vega:OTTHUMG00000132291 18 18q12 nucleolar protein 4 protein-coding NOL4 nucleolar protein 4 O cancer/testis antigen 125|nucleolar localized protein 20121230 -9606 8717 TRADD - Hs.89862 HGNC:12030|MIM:603500|Ensembl:ENSG00000102871|HPRD:04610|Vega:OTTHUMG00000137519 16 16q22 TNFRSF1A-associated via death domain protein-coding TRADD TNFRSF1A-associated via death domain O TNFR1-associated death domain protein|tumor necrosis factor receptor type 1 associated death domain protein|tumor necrosis factor receptor type 1-associated DEATH domain protein|tumor necrosis factor receptor-1-associated protein 20121230 -9606 8718 TNFRSF25 RP4-650H14.2 APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR HGNC:11910|MIM:603366|Ensembl:ENSG00000215788|HPRD:04532|Vega:OTTHUMG00000000831 1 1p36.2 tumor necrosis factor receptor superfamily, member 25 protein-coding TNFRSF25 tumor necrosis factor receptor superfamily, member 25 O apoptosis inducing receptor|apoptosis-inducing receptor AIR|apoptosis-mediating receptor DR3|apoptosis-mediating receptor TRAMP|death domain receptor 3 soluble form|death receptor beta|lymphocyte-associated receptor of death|protein WSL-1|tumor necrosis factor receptor superfamily member 25|tumor necrosis factor receptor superfamily, member 12 (translocating chain-association membrane protein) 20121230 -9606 8720 MBTPS1 - PCSK8|S1P|SKI-1 HGNC:15456|MIM:603355|Ensembl:ENSG00000140943|HPRD:04522|Vega:OTTHUMG00000137639 16 16q24 membrane-bound transcription factor peptidase, site 1 protein-coding MBTPS1 membrane-bound transcription factor peptidase, site 1 O endopeptidase S1P|membrane-bound transcription factor site-1 protease|site-1 protease|subtilisin/kexin isozyme-1 20121230 -9606 8721 EDF1 RP11-216L13.1 EDF-1|MBF1 HGNC:3164|MIM:605107|Ensembl:ENSG00000107223|HPRD:09235|Vega:OTTHUMG00000020948 9 9q34.3 endothelial differentiation-related factor 1 protein-coding EDF1 endothelial differentiation-related factor 1 O multiprotein bridging factor 1 20121230 -9606 8722 CTSF - CATSF|CLN13 HGNC:2531|MIM:603539|Ensembl:ENSG00000174080|HPRD:04643|Vega:OTTHUMG00000167090 11 11q13 cathepsin F protein-coding CTSF cathepsin F O - 20121230 -9606 8723 SNX4 - ATG24B HGNC:11175|MIM:605931|Ensembl:ENSG00000114520|HPRD:09334|Vega:OTTHUMG00000159575 3 3q21.2 sorting nexin 4 protein-coding SNX4 sorting nexin 4 O sorting nexin-4 20121230 -9606 8724 SNX3 RP3-429G5.4 Grd19|MCOPS8|SDP3 HGNC:11174|MIM:605930|Ensembl:ENSG00000112335|HPRD:09333|Vega:OTTHUMG00000015323 6 6q21 sorting nexin 3 protein-coding SNX3 sorting nexin 3 O sorting nexin 3A|sorting nexin-3 20121230 -9606 8725 URI1 - C19orf2|NNX3|PPP1R19|RMP|URI HGNC:13236|MIM:603494|Ensembl:ENSG00000105176|HPRD:11943|Vega:OTTHUMG00000177923 19 19q12 URI1, prefoldin-like chaperone protein-coding URI1 URI1, prefoldin-like chaperone O RNA polymerase II subunit 5-mediating protein|RPB5-mediating protein|protein phosphatase 1 regulatory subunit 19|protein phosphatase 1, regulatory subunit 19|unconventional prefoldin RPB5 interactor 1 20121230 -9606 8726 EED - HEED|WAIT1 HGNC:3188|MIM:605984|Ensembl:ENSG00000074266|HPRD:09343|Vega:OTTHUMG00000167209 11 11q14.2-q22.3 embryonic ectoderm development protein-coding EED embryonic ectoderm development O WD protein associating with integrin cytoplasmic tails 1|polycomb protein EED 20121230 -9606 8727 CTNNAL1 RP11-115J22.1 CLLP|alpha-CATU HGNC:2512|MIM:604785|Ensembl:ENSG00000119326|HPRD:09210|Vega:OTTHUMG00000020466 9 9q31.2 catenin (cadherin-associated protein), alpha-like 1 protein-coding CTNNAL1 catenin (cadherin-associated protein), alpha-like 1 O ACRP|alpha-catenin-related protein|alpha-catulin|alpha2-catulin|catenin alpha-like protein 1 20121230 -9606 8728 ADAM19 FKSG34 MADDAM|MLTNB HGNC:197|MIM:603640|Ensembl:ENSG00000135074|HPRD:04704|Vega:OTTHUMG00000130242 5 5q33.3 ADAM metallopeptidase domain 19 protein-coding ADAM19 ADAM metallopeptidase domain 19 O ADAM 19|a disintegrin and metalloproteinase domain 19 (meltrin beta)|disintegrin and metalloproteinase domain-containing protein 19|meltrin beta|meltrin-beta|metalloprotease and disintegrin dendritic antigen marker 20121230 -9606 8729 GBF1 - ARF1GEF HGNC:4181|MIM:603698|Ensembl:ENSG00000107862|HPRD:04740|Vega:OTTHUMG00000018955 10 10q24 golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 O BFA-resistant GEF 1|Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 20121230 -9606 8731 RNMT - MET|RG7MT1|hCMT1c HGNC:10075|MIM:603514|Ensembl:ENSG00000101654|HPRD:04622|Vega:OTTHUMG00000131718 18 18p11.21 RNA (guanine-7-) methyltransferase protein-coding RNMT RNA (guanine-7-) methyltransferase O hCMT1|hMet|hcm1p|mRNA (guanine-7-)methyltransferase|mRNA (guanine-N(7)-)-methyltransferase|mRNA cap guanine-N7 methyltransferase|mRNA cap methyltransferase 20121230 -9606 8732 RNGTT RP3-488C13.1 CAP1A|HCE|HCE1|hCAP HGNC:10073|MIM:603512|Ensembl:ENSG00000111880|HPRD:04621|Vega:OTTHUMG00000015190 6 6q16 RNA guanylyltransferase and 5'-phosphatase protein-coding RNGTT RNA guanylyltransferase and 5'-phosphatase O HCAP1|mRNA-capping enzyme 20121230 -9606 8733 GPAA1 - GAA1|hGAA1 HGNC:4446|MIM:603048|Ensembl:ENSG00000197858|HPRD:04334|Vega:OTTHUMG00000165438 8 8q24.3 glycosylphosphatidylinositol anchor attachment 1 protein-coding GPAA1 glycosylphosphatidylinositol anchor attachment 1 O GAA1 protein homolog|GPAA1P anchor attachment protein 1 homolog|GPI anchor attachment protein 1|GPI transamidase subunit|anchor attachment protein 1 (Gaa1p, yeast) homolog|glycophosphatidylinositol anchor attachment 1|glycosylphosphatidylinositol anchor attachment 1 protein|glycosylphosphatidylinositol anchor attachment protein 1 homolog 20121230 -9606 8735 MYH13 - MyHC-eo HGNC:7571|MIM:603487|Ensembl:ENSG00000006788|HPRD:04599|Vega:OTTHUMG00000177987 17 17p13 myosin, heavy chain 13, skeletal muscle protein-coding MYH13 myosin, heavy chain 13, skeletal muscle O extraocular muscle myosin heavy chain|extraocular myosin heavy chain|myosin heavy chain 13|myosin heavy chain, skeletal muscle, extraocular|myosin, heavy polypeptide 13, skeletal muscle|myosin-13 20121230 -9606 8736 MYOM1 - SKELEMIN HGNC:7613|MIM:603508|Ensembl:ENSG00000101605|HPRD:04618|Vega:OTTHUMG00000178209 18 18p11.31 myomesin 1 protein-coding MYOM1 myomesin 1 O 190 kDa connectin-associated protein|190 kDa titin-associated protein|EH-myomesin|myomesin (M-protein) 1 (190kD)|myomesin 1 (skelemin) 185kDa|myomesin 1, 185kDa|myomesin family member 1|myomesin-1 20121230 -9606 8737 RIPK1 - RIP|RIP1 HGNC:10019|MIM:603453|Ensembl:ENSG00000137275|HPRD:04583|Vega:OTTHUMG00000014134 6 6p25.2 receptor (TNFRSF)-interacting serine-threonine kinase 1 protein-coding RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1 O RIP-1|cell death protein RIP|receptor interacting protein|receptor-interacting protein 1|receptor-interacting serine/threonine-protein kinase 1|serine/threonine-protein kinase RIP 20121230 -9606 8738 CRADD - MRT34|RAIDD HGNC:2340|MIM:603454|Ensembl:ENSG00000169372|HPRD:04584|Vega:OTTHUMG00000170322 12 12q21.33-q23.1 CASP2 and RIPK1 domain containing adaptor with death domain protein-coding CRADD CASP2 and RIPK1 domain containing adaptor with death domain O RIP-associated ICH1/CED3-homologous protein with death domain|RIP-associated protein with a death domain|caspase and RIP adaptor with death domain|death adaptor molecule RAIDD|death domain-containing protein CRADD 20121230 -9606 8739 HRK - DP5|HARAKIRI HGNC:5185|MIM:603447|Ensembl:ENSG00000135116|HPRD:04581|Vega:OTTHUMG00000169328 12 12q24.22 harakiri, BCL2 interacting protein (contains only BH3 domain) protein-coding HRK harakiri, BCL2 interacting protein (contains only BH3 domain) O BCL2-interacting protein|BH3-interacting domain-containing protein 3|activator of apoptosis Hrk|activator of apoptosis harakiri|death protein 5|neuronal death protein DP5 20121230 -9606 8740 TNFSF14 UNQ391/PRO726 CD258|HVEML|LIGHT|LTg|TR2 HGNC:11930|MIM:604520|Ensembl:ENSG00000125735|HPRD:05157 19 19p13.3 tumor necrosis factor (ligand) superfamily, member 14 protein-coding TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 O delta transmembrane LIGHT|herpes virus entry mediator ligand|herpesvirus entry mediator A|herpesvirus entry mediator ligand|herpesvirus entry mediator-ligand|ligand for herpesvirus entry mediator|tumor necrosis factor ligand superfamily member 14|tumor necrosis factor receptor-like 2|tumor necrosis factor superfamily member LIGHT 20121230 -9606 8741 TNFSF13 UNQ383/PRO715 APRIL|CD256|TALL-2|TALL2|TRDL-1|ZTNF2 HGNC:11928|MIM:604472|Ensembl:ENSG00000161955|Vega:OTTHUMG00000108145 17 17p13.1 tumor necrosis factor (ligand) superfamily, member 13 protein-coding TNFSF13 tumor necrosis factor (ligand) superfamily, member 13 O TNF- and APOL-related leukocyte expressed ligand 2|a proliferation-inducing ligand|tumor necrosis factor ligand superfamily member 13|tumor necrosis factor-like protein ZTNF2|tumor necrosis factor-related death ligand-1 20121230 -9606 8742 TNFSF12 UNQ181/PRO207 APO3L|DR3LG|TWEAK HGNC:11927|MIM:602695|Ensembl:ENSG00000239697|HPRD:04074|Vega:OTTHUMG00000108148 17 17p13 tumor necrosis factor (ligand) superfamily, member 12 protein-coding TNFSF12 tumor necrosis factor (ligand) superfamily, member 12 O APO3 ligand|APO3/DR3 ligand|TNF-related WEAK inducer of apoptosis|tumor necrosis factor ligand superfamily member 12 20121230 -9606 8743 TNFSF10 - APO2L|Apo-2L|CD253|TL2|TRAIL HGNC:11925|MIM:603598|Ensembl:ENSG00000121858|HPRD:04670|Vega:OTTHUMG00000156917 3 3q26 tumor necrosis factor (ligand) superfamily, member 10 protein-coding TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 O Apo-2 ligand|TNF-related apoptosis inducing ligand TRAIL|chemokine tumor necrosis factor ligand superfamily member 10|tumor necrosis factor (ligand) family, member 10|tumor necrosis factor apoptosis-inducing ligand splice variant delta|tumor necrosis factor ligand superfamily member 10 20121230 -9606 8744 TNFSF9 - 4-1BB-L|CD137L HGNC:11939|MIM:606182|Ensembl:ENSG00000125657|HPRD:05861 19 19p13.3 tumor necrosis factor (ligand) superfamily, member 9 protein-coding TNFSF9 tumor necrosis factor (ligand) superfamily, member 9 O 4-1BB ligand|4-1BBL|homolog of mouse 4-1BB-L|receptor 4-1BB ligand|tumor necrosis factor ligand superfamily member 9 20121230 -9606 8745 ADAM23 - MDC3 HGNC:202|MIM:603710|Ensembl:ENSG00000114948|HPRD:04752|Vega:OTTHUMG00000132919 2 2q33 ADAM metallopeptidase domain 23 protein-coding ADAM23 ADAM metallopeptidase domain 23 O MDC-3|disintegrin and metalloproteinase domain-containing protein 23|metalloproteinase-like, disintegrin-like, and cysteine-rich protein 3 20121230 -9606 8747 ADAM21 - ADAM 21|ADAM31 HGNC:200|MIM:603713|HPRD:04755 14 14q24.1 ADAM metallopeptidase domain 21 protein-coding ADAM21 ADAM metallopeptidase domain 21 O ADAM metallopeptidase domain 21, preproprotein|a disintegrin and metalloproteinase domain 21|disintegrin and metalloproteinase domain-containing protein 21 20121230 -9606 8748 ADAM20 - - HGNC:199|MIM:603712|Ensembl:ENSG00000134007|HPRD:04754|Vega:OTTHUMG00000167548 14 14q24.1 ADAM metallopeptidase domain 20 protein-coding ADAM20 ADAM metallopeptidase domain 20 O ADAM 20|a disintegrin and metalloproteinase domain 20|disintegrin and metalloproteinase domain-containing protein 20 20121230 -9606 8749 ADAM18 UNQ858/PRO1867 ADAM27|tMDCIII HGNC:196|Ensembl:ENSG00000168619|HPRD:07469|Vega:OTTHUMG00000164040 8 8p11.22 ADAM metallopeptidase domain 18 protein-coding ADAM18 ADAM metallopeptidase domain 18 O ADAM 18|a disintegrin and metalloproteinase domain 18|disintegrin and metalloproteinase domain-containing protein 18|tMDC III|transmembrane metalloproteinase-like, disintegrin-like, and cysteine-rich protein III 20121230 -9606 8751 ADAM15 RP11-540D14.1 MDC15 HGNC:193|MIM:605548|Ensembl:ENSG00000143537|HPRD:05674|Vega:OTTHUMG00000013898 1 1q21.3 ADAM metallopeptidase domain 15 protein-coding ADAM15 ADAM metallopeptidase domain 15 O MDC-15|a disintegrin and metalloproteinase domain 15 (metargidin)|disintegrin and metalloproteinase domain-containing protein 15|metalloprotease RGD disintegrin protein|metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15 20121230 -9606 8754 ADAM9 - CORD9|MCMP|MDC9|Mltng HGNC:216|MIM:602713|Ensembl:ENSG00000168615|HPRD:04091|Vega:OTTHUMG00000159783 8 8p11.22 ADAM metallopeptidase domain 9 protein-coding ADAM9 ADAM metallopeptidase domain 9 O ADAM metallopeptidase domain 9 (meltrin gamma)|cellular disintegrin-related protein|cone rod dystrophy 9|disintegrin and metalloproteinase domain-containing protein 9|metalloprotease/disintegrin/cysteine-rich protein 9|myeloma cell metalloproteinase 20121230 -9606 8755 ADAM6 - C14orf96|tMDCIV HGNC:213 14 14q32.33 ADAM metallopeptidase domain 6, pseudogene pseudo ADAM6 ADAM metallopeptidase domain 6, pseudogene O - 20121230 -9606 8756 ADAM7 - ADAM 7|ADAM-7|EAPI|GP-83|GP83 HGNC:214|MIM:607310|Ensembl:ENSG00000069206|HPRD:07391|Vega:OTTHUMG00000097859 8 8p21.2 ADAM metallopeptidase domain 7 protein-coding ADAM7 ADAM metallopeptidase domain 7 O a disintegrin and metalloproteinase domain 7|disintegrin and metalloproteinase domain-containing protein 7|epididymal apical protein I|sperm maturation-related glycoprotein GP-83 20121230 -9606 8759 ADAM1A - ADAM1|ADAM1P|FTNAP|Ftna|PH-30a HGNC:187 12 12q24.13 ADAM metallopeptidase domain 1A, pseudogene pseudo ADAM1A ADAM metallopeptidase domain 1A, pseudogene O - 20121230 -9606 8760 CDS2 RP4-680N4.2 - HGNC:1801|MIM:603549|Ensembl:ENSG00000101290|HPRD:09150|Vega:OTTHUMG00000031801 20 20p13 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 protein-coding CDS2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 O CDP-DAG synthase 2|CDP-DG synthase 2|CDP-DG synthetase 2|CDP-diacylglycerol synthase 2|CDP-diglyceride diphosphorylase 2|CDP-diglyceride pyrophosphorylase 2|CDP-diglyceride synthase 2|CDP-diglyceride synthetase 2|CDS 2|CTP:phosphatidate cytidylyltransferase 2|phosphatidate cytidylyltransferase 2 20121230 -9606 8761 PABPC4 - APP-1|APP1|PABP4|iPABP HGNC:8557|MIM:603407|Ensembl:ENSG00000090621|HPRD:04557|Vega:OTTHUMG00000009097 1 1p34.2 poly(A) binding protein, cytoplasmic 4 (inducible form) protein-coding PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) O PABP-4|activated-platelet protein 1|inducible poly(A)-binding protein|poly(A)-binding protein 4|polyadenylate-binding protein 4 20121230 -9606 8763 CD164 RP11-425D10.9 MGC-24|MUC-24|endolyn HGNC:1632|MIM:603356|Ensembl:ENSG00000135535|HPRD:04523|Vega:OTTHUMG00000015339 6 6q21 CD164 molecule, sialomucin protein-coding CD164 CD164 molecule, sialomucin O CD164 antigen, sialomucin|MGC-24v|multi-glycosylated core protein 24|sialomucin core protein 24 20121230 -9606 8764 TNFRSF14 RP3-395M20.6 ATAR|CD270|HVEA|HVEM|LIGHTR|TR2 HGNC:11912|MIM:602746|Ensembl:ENSG00000157873|HPRD:04122|Vega:OTTHUMG00000000792 1 1p36.32 tumor necrosis factor receptor superfamily, member 14 protein-coding TNFRSF14 tumor necrosis factor receptor superfamily, member 14 O CD40-like protein|herpes virus entry mediator A|herpesvirus entry mediator A|tumor necrosis factor receptor superfamily member 14|tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)|tumor necrosis factor receptor-like 2|tumor necrosis factor receptor-like gene2 20121230 -9606 8766 RAB11A - YL8 HGNC:9760|MIM:605570|Ensembl:ENSG00000103769|HPRD:05715|Vega:OTTHUMG00000133162 15 15q22.31 RAB11A, member RAS oncogene family protein-coding RAB11A RAB11A, member RAS oncogene family O RAB 11A, member oncogene family|rab-11|ras-related protein Rab-11A 20121230 -9606 8767 RIPK2 WUGSC:H_RG437L15.1 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 HGNC:10020|MIM:603455|Ensembl:ENSG00000104312|HPRD:04585|Vega:OTTHUMG00000163809 8 8q21 receptor-interacting serine-threonine kinase 2 protein-coding RIPK2 receptor-interacting serine-threonine kinase 2 O CARD-carrying kinase|CARD-containing IL-1 beta ICE-kinase|CARD-containing interleukin-1 beta-converting enzyme (ICE)-associated kinase|RIP-2|growth-inhibiting gene 30|receptor-interacting protein (RIP)-like interacting caspase-like apoptosis regulatory protein (CLARP) kinase|receptor-interacting protein 2|receptor-interacting serine/threonine-protein kinase 2|tyrosine-protein kinase RIPK2 20121230 -9606 8771 TNFRSF6B hCG_2044836 DCR3|DJ583P15.1.1|M68|M68E|TR6 HGNC:11921|MIM:603361|Ensembl:ENSG00000243509|HPRD:04527|Vega:OTTHUMG00000143724 20 20q13.3 tumor necrosis factor receptor superfamily, member 6b, decoy protein-coding TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy O decoy receptor 3|decoy receptor for Fas ligand|tumor necrosis factor receptor superfamily member 6B 20121230 -9606 8772 FADD GIG3 MORT1 HGNC:3573|MIM:602457|Ensembl:ENSG00000168040|HPRD:03909|Vega:OTTHUMG00000167264 11 11q13.3 Fas (TNFRSF6)-associated via death domain protein-coding FADD Fas (TNFRSF6)-associated via death domain O Fas-associating death domain-containing protein|Fas-associating protein with death domain|growth-inhibiting gene 3 protein|mediator of receptor induced toxicity|mediator of receptor-induced toxicity|protein FADD 20121230 -9606 8773 SNAP23 - HsT17016|SNAP-23|SNAP23A|SNAP23B HGNC:11131|MIM:602534|Ensembl:ENSG00000092531|HPRD:03962|Vega:OTTHUMG00000130625 15 15q14 synaptosomal-associated protein, 23kDa protein-coding SNAP23 synaptosomal-associated protein, 23kDa O synaptosomal-associated protein 23|vesicle-membrane fusion protein SNAP-23 20121230 -9606 8774 NAPG - GAMMASNAP HGNC:7642|MIM:603216|Ensembl:ENSG00000134265|HPRD:04448|Vega:OTTHUMG00000179119 18 18p11.22 N-ethylmaleimide-sensitive factor attachment protein, gamma protein-coding NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma O SNAP-gamma|gamma SNAP|gamma-soluble NSF attachment protein|soluble NSF attachment protein 20121230 -9606 8775 NAPA - SNAPA HGNC:7641|MIM:603215|Ensembl:ENSG00000105402|HPRD:04447 19 19q13.33 N-ethylmaleimide-sensitive factor attachment protein, alpha protein-coding NAPA N-ethylmaleimide-sensitive factor attachment protein, alpha O alpha-SNAP|alpha-soluble NSF attachment protein 20121230 -9606 8776 MTMR1 - - HGNC:7449|MIM:300171|Ensembl:ENSG00000063601|HPRD:02163|Vega:OTTHUMG00000024159 X Xq28 myotubularin related protein 1 protein-coding MTMR1 myotubularin related protein 1 O myotubularin-related protein 1 20121230 -9606 8777 MPDZ RP11-382H24.1 MUPP1 HGNC:7208|MIM:603785|Ensembl:ENSG00000107186|HPRD:09155|Vega:OTTHUMG00000021031 9 9p23 multiple PDZ domain protein protein-coding MPDZ multiple PDZ domain protein O multi-PDZ domain protein 1 20121230 -9606 8778 SIGLEC5 - CD170|CD33L2|OB-BP2|OBBP2|SIGLEC-5 HGNC:10874|MIM:604200|Ensembl:ENSG00000105501|HPRD:05011|Vega:OTTHUMG00000165510 19 19q13.3 sialic acid binding Ig-like lectin 5 protein-coding SIGLEC5 sialic acid binding Ig-like lectin 5 O CD33 antigen-like 2|OB-binding protein 2|obesity-binding protein 2|sialic acid-binding Ig-like lectin 5|sialic acid-binding immunoglobulin-like lectin 5 20121230 -9606 8780 RIOK3 - SUDD HGNC:11451|MIM:603579|Ensembl:ENSG00000101782|HPRD:04659|Vega:OTTHUMG00000131813 18 18q11.2 RIO kinase 3 protein-coding RIOK3 RIO kinase 3 O homolog of the Aspergillus nidulans sudD gene product|serine/threonine-protein kinase RIO3|sudD (suppressor of bimD6, Aspergillus nidulans) homolog|sudD homolog|sudD suppressor of Aspergillus nidulans bimD6 homolog|sudD suppressor of bimD6 homolog 20121230 -9606 8781 PSPHP1 - CO9|PSPHL HGNC:9578|MIM:604239 7 7q11.2 phosphoserine phosphatase pseudogene 1 pseudo PSPHP1 phosphoserine phosphatase pseudogene 1 O - 20121230 -9606 8782 MYP3 - - HGNC:7617|MIM:603221 12 12q21-q23 myopia 3 (high grade, autosomal dominant) unknown MYP3 myopia 3 (high grade, autosomal dominant) O - 20120622 -9606 8784 TNFRSF18 RP5-902P8.2 AITR|CD357|GITR|GITR-D HGNC:11914|MIM:603905|Ensembl:ENSG00000186891|HPRD:04879|Vega:OTTHUMG00000001414 1 1p36.3 tumor necrosis factor receptor superfamily, member 18 protein-coding TNFRSF18 tumor necrosis factor receptor superfamily, member 18 O TNF receptor superfamily activation-inducible protein|activation-inducible TNFR family receptor|glucocorticoid-induced TNFR-related protein|tumor necrosis factor receptor superfamily member 18 20121230 -9606 8785 MATN4 - HE6WCR54 HGNC:6910|MIM:603897|Ensembl:ENSG00000124159|HPRD:04873|Vega:OTTHUMG00000033043 20 20q13.1-q13.2 matrilin 4 protein-coding MATN4 matrilin 4 O matrilin-4 20121230 -9606 8786 RGS11 AC004754.2 RS11 HGNC:9993|MIM:603895|Ensembl:ENSG00000076344|HPRD:04872|Vega:OTTHUMG00000064893 16 16p13.3 regulator of G-protein signaling 11 protein-coding RGS11 regulator of G-protein signaling 11 O regulator of G-protein signalling 11 20121230 -9606 8787 RGS9 - PERRS|RGS9L HGNC:10004|MIM:604067|Ensembl:ENSG00000108370|HPRD:04962|Vega:OTTHUMG00000179349 17 17q24 regulator of G-protein signaling 9 protein-coding RGS9 regulator of G-protein signaling 9 O regulator of G-protein signalling 9 20121230 -9606 8788 DLK1 - DLK|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 HGNC:2907|MIM:176290|Ensembl:ENSG00000185559|HPRD:01446|Vega:OTTHUMG00000171600 14 14q32 delta-like 1 homolog (Drosophila) protein-coding DLK1 delta-like 1 homolog (Drosophila) O DLK-1|fetal antigen 1|preadipocyte factor 1|protein delta homolog 1|secredeltin 20121230 -9606 8789 FBP2 - - HGNC:3607|MIM:603027|Ensembl:ENSG00000130957|HPRD:04322|Vega:OTTHUMG00000020269 9 9q22.3 fructose-1,6-bisphosphatase 2 protein-coding FBP2 fructose-1,6-bisphosphatase 2 O D-fructose-1,6-bisphosphate 1-phosphohydrolase 2|FBPase 2|fructose-1,6-bisphosphatase isozyme 2|hexosediphosphatase|muscle fructose-bisphosphatase 20121230 -9606 8790 FPGT - GFPP HGNC:3825|MIM:603609|Ensembl:ENSG00000254685|HPRD:06790|Vega:OTTHUMG00000009571 1 1p31.1 fucose-1-phosphate guanylyltransferase protein-coding FPGT fucose-1-phosphate guanylyltransferase O GDP-L-fucose diphosphorylase|GDP-beta-L-fucose pyrophosphorylase|fucose-1-phosphate guanyltransferase 20121230 -9606 8792 TNFRSF11A - CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER HGNC:11908|MIM:603499|Ensembl:ENSG00000141655|HPRD:04609|Vega:OTTHUMG00000132779 18 18q22.1 tumor necrosis factor receptor superfamily, member 11a, NFKB activator protein-coding TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator O loss of heterozygosity, 18, chromosomal region 1|osteoclast differentiation factor receptor|receptor activator of NF-KB|receptor activator of nuclear factor-kappa B|tumor necrosis factor receptor superfamily member 11A 20121230 -9606 8793 TNFRSF10D UNQ251/PRO288 CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD HGNC:11907|MIM:603614|Ensembl:ENSG00000173530|HPRD:04682|Vega:OTTHUMG00000097845 8 8p21 tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain O TNF receptor-related receptor for TRAIL|TNF-related apoptosis-inducing ligand receptor 4|TRAIL receptor 4|TRAIL receptor with a truncated death domain|decoy receptor 2|tumor necrosis factor receptor superfamily member 10D 20121230 -9606 8794 TNFRSF10C UNQ321/PRO366 CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID HGNC:11906|MIM:603613|Ensembl:ENSG00000173535|HPRD:04681|Vega:OTTHUMG00000097844 8 8p22-p21 tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain protein-coding TNFRSF10C tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain O TNF-related apoptosis-inducing ligand receptor 3|antagonist decoy receptor for TRAIL/Apo-2L|cytotoxic TRAIL receptor-3|decoy TRAIL receptor without death domain|decoy receptor 1|lymphocyte inhibitor of TRAIL|tumor necrosis factor receptor superfamily member 10C 20121230 -9606 8795 TNFRSF10B UNQ160/PRO186 CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9 HGNC:11905|MIM:603612|Ensembl:ENSG00000120889|HPRD:04680|Vega:OTTHUMG00000097826 8 8p22-p21 tumor necrosis factor receptor superfamily, member 10b protein-coding TNFRSF10B tumor necrosis factor receptor superfamily, member 10b O Fas-like protein|TNF-related apoptosis-inducing ligand receptor 2|apoptosis inducing protein TRICK2A/2B|apoptosis inducing receptor TRAIL-R2|cytotoxic TRAIL receptor-2|death domain containing receptor for TRAIL/Apo-2L|death receptor 5|p53-regulated DNA damage-inducible cell death receptor(killer)|tumor necrosis factor receptor superfamily member 10B|tumor necrosis factor receptor-like protein ZTNFR9 20121230 -9606 8796 SCEL - - HGNC:10573|MIM:604112|Ensembl:ENSG00000136155|HPRD:09161|Vega:OTTHUMG00000017107 13 13q22 sciellin protein-coding SCEL sciellin O - 20121230 -9606 8797 TNFRSF10A - APO2|CD261|DR4|TRAILR-1|TRAILR1 HGNC:11904|MIM:603611|Ensembl:ENSG00000104689|HPRD:04679|Vega:OTTHUMG00000097843 8 8p21 tumor necrosis factor receptor superfamily, member 10a protein-coding TNFRSF10A tumor necrosis factor receptor superfamily, member 10a O TNF-related apoptosis-inducing ligand receptor 1|TRAIL receptor 1|TRAIL-R1|cytotoxic TRAIL receptor|death receptor 4|tumor necrosis factor receptor superfamily member 10A|tumor necrosis factor receptor superfamily member 10a variant 2 20121230 -9606 8798 DYRK4 - - HGNC:3095|MIM:609181|Ensembl:ENSG00000010219|HPRD:10926|Vega:OTTHUMG00000168204 12 12p13.32 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 protein-coding DYRK4 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 O dual specificity tyrosine-phosphorylation-regulated kinase 4 20121230 -9606 8799 PEX11B - PEX11-BETA|PEX14B HGNC:8853|MIM:603867|Ensembl:ENSG00000131779|HPRD:04844|Vega:OTTHUMG00000013756 1 1q21.1 peroxisomal biogenesis factor 11 beta protein-coding PEX11B peroxisomal biogenesis factor 11 beta O peroxin-11B|peroxisomal biogenesis factor 11B|peroxisomal membrane protein 11B|protein PEX11 homolog beta 20121230 -9606 8800 PEX11A - PEX11-ALPHA|PMP28|hsPEX11p HGNC:8852|MIM:603866|Ensembl:ENSG00000166821|HPRD:04843|Vega:OTTHUMG00000149809 15 15q26.1 peroxisomal biogenesis factor 11 alpha protein-coding PEX11A peroxisomal biogenesis factor 11 alpha O 28 kDa peroxisomal integral membrane protein|peroxin-11A|peroxisomal biogenesis factor 11A|peroxisomal membrane protein 11A|protein PEX11 homolog alpha 20121230 -9606 8801 SUCLG2 - GBETA HGNC:11450|MIM:603922|Ensembl:ENSG00000172340|HPRD:06799|Vega:OTTHUMG00000158740 3 3p14.1 succinate-CoA ligase, GDP-forming, beta subunit protein-coding SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit O GTP-specific succinyl-CoA synthetase beta subunit|GTP-specific succinyl-CoA synthetase subunit beta|SCS-betaG|succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial|succinyl-CoA ligase, GDP-forming, beta chain, mitochondrial|succinyl-CoA synthetase beta-G chain|succinyl-CoA synthetase, beta-G chain 20121230 -9606 8802 SUCLG1 - GALPHA|MTDPS9|SUCLA1 HGNC:11449|MIM:611224|Ensembl:ENSG00000163541|HPRD:18128|Vega:OTTHUMG00000130023 2 2p11.2 succinate-CoA ligase, alpha subunit protein-coding SUCLG1 succinate-CoA ligase, alpha subunit O SCS-alpha|succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial|succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial|succinyl-CoA synthetase subunit alpha 20121230 -9606 8803 SUCLA2 RP11-528D24.2 A-BETA|MTDPS5|SCS-betaA HGNC:11448|MIM:603921|Ensembl:ENSG00000136143|HPRD:06798|Vega:OTTHUMG00000016889 13 13q12.2-q13.3 succinate-CoA ligase, ADP-forming, beta subunit protein-coding SUCLA2 succinate-CoA ligase, ADP-forming, beta subunit O ATP-specific succinyl-CoA synthetase subunit beta|ATP-specific succinyl-CoA synthetase, beta subunit|mitochondrial succinyl-CoA ligase [ADP-forming] subunit beta|renal carcinoma antigen NY-REN-39|succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial|succinyl-CoA synthetase beta-A chain 20121230 -9606 8804 CREG1 UNQ727/PRO1409 CREG HGNC:2351|Ensembl:ENSG00000143162|HPRD:09897|Vega:OTTHUMG00000034682 1 1q24 cellular repressor of E1A-stimulated genes 1 protein-coding CREG1 cellular repressor of E1A-stimulated genes 1 O protein CREG1 20121230 -9606 8805 TRIM24 - PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 HGNC:11812|MIM:603406|Ensembl:ENSG00000122779|HPRD:04556|Vega:OTTHUMG00000155820 7 7q32-q34 tripartite motif containing 24 protein-coding TRIM24 tripartite motif containing 24 O E3 ubiquitin-protein ligase TRIM24|RING finger protein 82|TIF1-alpha|transcription intermediary factor 1-alpha|transcriptional intermediary factor 1|tripartite motif-containing 24 20121230 -9606 8806 SCZD8 - - HGNC:10656|MIM:603206 18 18p schizophrenia disorder 8 unknown SCZD8 schizophrenia disorder 8 O - 20120622 -9606 8807 IL18RAP - ACPL|CD218b|CDw218b|IL18RB HGNC:5989|MIM:604509|Ensembl:ENSG00000115607|HPRD:05147|Vega:OTTHUMG00000130777 2 2q12 interleukin 18 receptor accessory protein protein-coding IL18RAP interleukin 18 receptor accessory protein O CD218 antigen-like family member B|IL-18 receptor accessory protein|IL-18 receptor beta|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|interleukin-1 receptor 7|interleukin-18 receptor accessory protein|interleukin-18 receptor beta 20121230 -9606 8808 IL1RL2 - IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 HGNC:5999|MIM:604512|Ensembl:ENSG00000115598|HPRD:05150|Vega:OTTHUMG00000130776 2 2q12 interleukin 1 receptor-like 2 protein-coding IL1RL2 interleukin 1 receptor-like 2 O IL-1 receptor-related protein 2|interleukin-1 receptor-like 2|interleukin-1 receptor-related protein 2 20121230 -9606 8809 IL18R1 - CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP HGNC:5988|MIM:604494|Ensembl:ENSG00000115604|HPRD:05138|Vega:OTTHUMG00000130780 2 2q12 interleukin 18 receptor 1 protein-coding IL18R1 interleukin 18 receptor 1 O CD218 antigen-like family member A|IL-18R-1|IL-18R1|IL1 receptor-related protein|IL1R-rp|cytokine receptor|interleukin-18 receptor 1 20121230 -9606 8811 GALR2 - GALNR2 HGNC:4133|MIM:603691|Ensembl:ENSG00000182687|HPRD:04735|Vega:OTTHUMG00000167479 17 17q25.3 galanin receptor 2 protein-coding GALR2 galanin receptor 2 O GAL2-R|GALR-2|galanin receptor type 2 20121230 -9606 8812 CCNK - CPR4 HGNC:1596|MIM:603544|Ensembl:ENSG00000090061|Vega:OTTHUMG00000171495 14 14q32 cyclin K protein-coding CCNK cyclin K O cyclin-K 20121230 -9606 8813 DPM1 RP5-914P20.2 CDGIE|MPDS HGNC:3005|MIM:603503|Ensembl:ENSG00000000419|HPRD:04613|Vega:OTTHUMG00000032742 20 20q13.13 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit protein-coding DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit O DPM synthase|MPD synthase|dolichol monophosphate mannose synthase|dolichol-phosphate mannose synthase|dolichol-phosphate mannosyltransferase|dolichyl-phosphate beta-D-mannosyltransferase|mannose-P-dolichol synthase 20121230 -9606 8814 CDKL1 - KKIALRE|P42 HGNC:1781|MIM:603441|Ensembl:ENSG00000100490|HPRD:10348|Vega:OTTHUMG00000140290 14 14q21.3 cyclin-dependent kinase-like 1 (CDC2-related kinase) protein-coding CDKL1 cyclin-dependent kinase-like 1 (CDC2-related kinase) O CDC2-related kinase 1|cyclin-dependent kinase-like 1|protein kinase p42 KKIALRE|serine/threonine protein kinase KKIALRE|serine/threonine-protein kinase KKIALRE 20121230 -9606 8815 BANF1 - BAF|BCRP1|D14S1460|NGPS HGNC:17397|MIM:603811|Ensembl:ENSG00000175334|HPRD:04817|Vega:OTTHUMG00000166749 11 11q13.1 barrier to autointegration factor 1 protein-coding BANF1 barrier to autointegration factor 1 O barrier-to-autointegration factor|breakpoint cluster region protein 1 20121230 -9606 8816 DCAF5 - BCRG2|BCRP2|D14S1461E|WDR22 HGNC:20224|MIM:603812|Ensembl:ENSG00000139990|HPRD:16032|Vega:OTTHUMG00000171699 14 14q23-q24.1 DDB1 and CUL4 associated factor 5 protein-coding DCAF5 DDB1 and CUL4 associated factor 5 O Breakpoint cluster region protein, uterine leiomyoma, 2|DDB1- and CUL4-associated factor 5|WD repeat domain 22|WD repeat-containing protein 22|breakpoint cluster region protein 2 20121230 -9606 8817 FGF18 UNQ420/PRO856 FGF-18|ZFGF5 HGNC:3674|MIM:603726|Ensembl:ENSG00000156427|HPRD:04766|Vega:OTTHUMG00000130464 5 5q34 fibroblast growth factor 18 protein-coding FGF18 fibroblast growth factor 18 O - 20121230 -9606 8818 DPM2 RP11-203J24.2 - HGNC:3006|MIM:603564|Ensembl:ENSG00000136908|HPRD:16028|Vega:OTTHUMG00000020725 9 9q34.13 dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit protein-coding DPM2 dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit O dolichol phosphate-mannose biosynthesis regulatory protein|dolichol phosphate-mannose synthase 2 20121230 -9606 8819 SAP30 - - HGNC:10532|MIM:603378|Ensembl:ENSG00000164105|HPRD:04540|Vega:OTTHUMG00000160798 4 4q34.1 Sin3A-associated protein, 30kDa protein-coding SAP30 Sin3A-associated protein, 30kDa O 30 kDa Sin3-associated polypeptide|Sin3 corepressor complex subunit SAP30|Sin3-associated polypeptide, 30kDa|histone deacetylase complex subunit SAP30|sin3-associated polypeptide p30|sin3-associated polypeptide, 30 kDa 20121230 -9606 8820 HESX1 - ANF|CPHD5|RPX HGNC:4877|MIM:601802|Ensembl:ENSG00000163666|HPRD:03482|Vega:OTTHUMG00000158597 3 3p14.3 HESX homeobox 1 protein-coding HESX1 HESX homeobox 1 O Rathke pouch homeobox|hAnf|homeobox expressed in ES cells 1|homeobox protein ANF|homeobox, ES cell expressed 1 20121230 -9606 8821 INPP4B - - HGNC:6075|MIM:607494|Ensembl:ENSG00000109452|HPRD:06322|Vega:OTTHUMG00000161341 4 4q31.21 inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa O inositol polyphosphate 4-phosphatase II; 4-phosphatase II|inositol polyphosphate 4-phosphatase type II|type II inositol 3,4-bisphosphate 4-phosphatase|type II inositol-3,4-bisphosphate 4-phosphatase 20121230 -9606 8822 FGF17 UNQ161/PRO187 FGF-13 HGNC:3673|MIM:603725|Ensembl:ENSG00000158815|HPRD:04765|Vega:OTTHUMG00000097051 8 8p21 fibroblast growth factor 17 protein-coding FGF17 fibroblast growth factor 17 O FGF-17 20121230 -9606 8823 FGF16 XX-FW80732C2.1 FGF-16 HGNC:3672|MIM:300827|Ensembl:ENSG00000196468|HPRD:04764|Vega:OTTHUMG00000013133 X Xq13 fibroblast growth factor 16 protein-coding FGF16 fibroblast growth factor 16 O - 20121230 -9606 8824 CES2 - CE-2|CES2A1|PCE-2|iCE HGNC:1864|MIM:605278|Ensembl:ENSG00000172831|HPRD:07062|Vega:OTTHUMG00000137517 16 16q22.1 carboxylesterase 2 protein-coding CES2 carboxylesterase 2 O carboxylesterase 2 (intestine, liver)|cocaine esterase|hCE-2|intestinal carboxylesterase; liver carboxylesterase-2|methylumbelliferyl-acetate deacetylase 2 20121230 -9606 8825 LIN7A - LIN-7A|LIN7|MALS-1|TIP-33|VELI1 HGNC:17787|MIM:603380|Ensembl:ENSG00000111052|HPRD:04542|Vega:OTTHUMG00000170168 12 12q21 lin-7 homolog A (C. elegans) protein-coding LIN7A lin-7 homolog A (C. elegans) O hLin-7|mammalian LIN-7 1|mammalian lin-seven protein 1|protein lin-7 homolog A|tax interaction protein 33|veli-1|vertebrate LIN7 homolog 1|vertebrate lin-7 homolog 1 20121230 -9606 8826 IQGAP1 - HUMORFA01|SAR1|p195 HGNC:6110|MIM:603379|Ensembl:ENSG00000140575|HPRD:04541|Vega:OTTHUMG00000149832 15 15q26.1 IQ motif containing GTPase activating protein 1 protein-coding IQGAP1 IQ motif containing GTPase activating protein 1 O RasGAP-like with IQ motifs|ras GTPase-activating-like protein IQGAP1 20121230 -9606 8828 NRP2 - NP2|NPN2|PRO2714|VEGF165R2 HGNC:8005|MIM:602070|Ensembl:ENSG00000118257|HPRD:03643|Vega:OTTHUMG00000132893 2 2q33.3 neuropilin 2 protein-coding NRP2 neuropilin 2 O neuropilin-2|neuropilin-2a(17)|neuropilin-2a(22)|neuropilin-2b(0)|receptor for VEGF165 and semaphorins class3|vascular endothelial cell growth factor 165 receptor 2 20121230 -9606 8829 NRP1 RP11-342D11.1 BDCA4|CD304|NP1|NRP|VEGF165R HGNC:8004|MIM:602069|Ensembl:ENSG00000099250|HPRD:03642|Vega:OTTHUMG00000019343 10 10p12 neuropilin 1 protein-coding NRP1 neuropilin 1 O neuropilin-1|transmembrane receptor|vascular endothelial cell growth factor 165 receptor 20121230 -9606 8830 PTLAH - FPAH HGNC:9622|MIM:168860 17 17q patella aplasia-hypoplasia unknown PTLAH patella aplasia-hypoplasia O - 20120622 -9606 8831 SYNGAP1 DASS-97D12.6 MRD5|RASA1|RASA5|SYNGAP HGNC:11497|MIM:603384|Ensembl:ENSG00000197283|HPRD:16018|Vega:OTTHUMG00000031096 6 6p21.3 synaptic Ras GTPase activating protein 1 protein-coding SYNGAP1 synaptic Ras GTPase activating protein 1 O neuronal RasGAP|ras GTPase-activating protein SynGAP|synaptic Ras GTPase activating protein 1 homolog|synaptic Ras GTPase activating protein, 135kDa|synaptic Ras GTPase-activating protein 1 20121230 -9606 8832 CD84 - LY9B|SLAMF5|hCD84|mCD84 HGNC:1704|MIM:604513|Ensembl:ENSG00000066294|HPRD:05151|Vega:OTTHUMG00000022788 1 1q24 CD84 molecule protein-coding CD84 CD84 molecule O CD84 antigen (leukocyte antigen)|SLAM family member 5|cell surface antigen MAX.3|hly9-beta|leucocyte differentiation antigen CD84|leukocyte antigen CD84|leukocyte differentiation antigen CD84|signaling lymphocytic activation molecule 5 20121230 -9606 8833 GMPS - - HGNC:4378|MIM:600358|Ensembl:ENSG00000163655|HPRD:10927|Vega:OTTHUMG00000158551 3 3q24 guanine monphosphate synthetase protein-coding GMPS guanine monphosphate synthetase O GMP synthase|GMP synthase [glutamine-hydrolyzing]|GMP synthetase|MLL/GMPS fusion protein|glutamine amidotransferase|guanosine 5'-monophosphate synthase 20121230 -9606 8834 TMEM11 - C17orf35|PM1|PMI HGNC:16823|Ensembl:ENSG00000178307|HPRD:12680|Vega:OTTHUMG00000178971 17 17p11.2 transmembrane protein 11 protein-coding TMEM11 transmembrane protein 11 O putative receptor protein|transmembrane protein 11, mitochondrial 20121230 -9606 8835 SOCS2 - CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 HGNC:19382|MIM:605117|Ensembl:ENSG00000120833|HPRD:05490|Vega:OTTHUMG00000170160 12 12q suppressor of cytokine signaling 2 protein-coding SOCS2 suppressor of cytokine signaling 2 O CIS-2|STAT induced STAT inhibitor-2|STAT-induced STAT inhibitor 2|STAT-induced STAT inhibitor-2|cytokine-inducible SH2 protein 2|suppressor of cytokine signaling-2 20121230 -9606 8836 GGH - GH HGNC:4248|MIM:601509|Ensembl:ENSG00000137563|HPRD:03299|Vega:OTTHUMG00000164365 8 8q12.3 gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) protein-coding GGH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) O gamma-Glu-X carboxypeptidase|gamma-glutamyl hydrolase 20121230 -9606 8837 CFLAR - CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS HGNC:1876|MIM:603599|Ensembl:ENSG00000003402|HPRD:04671|Vega:OTTHUMG00000132819 2 2q33-q34 CASP8 and FADD-like apoptosis regulator protein-coding CFLAR CASP8 and FADD-like apoptosis regulator O FADD-like anti-apoptotic molecule|FADD-like antiapoptotic molecule 1|MACH-related inducer of toxicity|caspase homolog|caspase-eight-related protein|caspase-like apoptosis regulatory protein|caspase-related inducer of apoptosis|cellular FLICE-like inhibitory protein|inhibitor of FLICE|usurpin beta 20121230 -9606 8838 WISP3 RP1-142L7.3 CCN6|LIBC|PPAC|PPD HGNC:12771|MIM:603400|Ensembl:ENSG00000112761|HPRD:04550|Vega:OTTHUMG00000015385 6 6q21 WNT1 inducible signaling pathway protein 3 protein-coding WISP3 WNT1 inducible signaling pathway protein 3 O CCN family member 6|WISP-3|WNT1-inducible-signaling pathway protein 3 20121230 -9606 8839 WISP2 RP11-445H22.2 CCN5|CT58|CTGF-L HGNC:12770|MIM:603399|Ensembl:ENSG00000064205|HPRD:16020|Vega:OTTHUMG00000033071 20 20q13.12 WNT1 inducible signaling pathway protein 2 protein-coding WISP2 WNT1 inducible signaling pathway protein 2 O CCN family member 5|WISP-2|WNT1-inducible-signaling pathway protein 2|connective tissue growth factor-like protein|connective tissue growth factor-related protein 58|wnt-1 signaling pathway protein 2 20121230 -9606 8840 WISP1 - CCN4|WISP1c|WISP1i|WISP1tc HGNC:12769|MIM:603398|Ensembl:ENSG00000104415|HPRD:16019|Vega:OTTHUMG00000164440 8 8q24.22 WNT1 inducible signaling pathway protein 1 protein-coding WISP1 WNT1 inducible signaling pathway protein 1 O CCN family member 4|WNT1 induced secreted protein 1|WNT1-inducible-signaling pathway protein 1|Wnt-1 inducible signaling pathway protein 1 20121230 -9606 8841 HDAC3 - HD3|RPD3|RPD3-2 HGNC:4854|MIM:605166|Ensembl:ENSG00000171720|HPRD:08950|Vega:OTTHUMG00000129629 5 5q31 histone deacetylase 3 protein-coding HDAC3 histone deacetylase 3 O SMAP45 20121230 -9606 8842 PROM1 MSTP061 AC133|CD133|CORD12|MCDR2|PROML1|RP41|STGD4 HGNC:9454|MIM:604365|Ensembl:ENSG00000007062|HPRD:05079|Vega:OTTHUMG00000160180 4 4p15.32 prominin 1 protein-coding PROM1 prominin 1 O antigen AC133|hProminin|hematopoietic stem cell antigen|prominin-1|prominin-like protein 1 20121230 -9606 8843 HCAR3 - GPR109B|HCA3|HM74|PUMAG|Puma-g HGNC:16824|MIM:606039|Ensembl:ENSG00000255398|HPRD:06917|Vega:OTTHUMG00000166034 12 12q24.31 hydroxycarboxylic acid receptor 3 protein-coding HCAR3 hydroxycarboxylic acid receptor 3 O G protein-coupled receptor 109B|G-protein coupled receptor 109B|G-protein coupled receptor HM74|G-protein coupled receptor HM74B|GTP-binding protein|hydroxy-carboxylic acid receptor 3|niacin receptor 2|nicotinic acid receptor 2|putative chemokine receptor 20121230 -9606 8844 KSR1 - KSR|RSU2 HGNC:6465|MIM:601132|Ensembl:ENSG00000141068|Vega:OTTHUMG00000132051 17 17q11.2 kinase suppressor of ras 1 protein-coding KSR1 kinase suppressor of ras 1 O kinase suppressor of Ras 1 20121230 -9606 8846 ALKBH1 - ABH|ABH1|ALKBH|alkB|hABH HGNC:17911|MIM:605345|Ensembl:ENSG00000100601|Vega:OTTHUMG00000171542 14 14q24.3 alkB, alkylation repair homolog 1 (E. coli) protein-coding ALKBH1 alkB, alkylation repair homolog 1 (E. coli) O DNA lyase ABH1|DNA oxidative demethylase ALKBH1|alkylated DNA repair protein alkB homolog 1|alkylation repair, alkB homolog|alpha-ketoglutarate-dependent dioxygenase ABH1 20121230 -9606 8847 DLEU2 RP4-534K7.3 1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS HGNC:13748|MIM:605766|HPRD:16151 13 13q14.3 deleted in lymphocytic leukemia 2 (non-protein coding) miscRNA DLEU2 deleted in lymphocytic leukemia 2 (non-protein coding) O - 20121230 -9606 8848 TSC22D1 RP11-269C23.2 Ptg-2|TGFB1I4|TSC22 HGNC:16826|MIM:607715|Ensembl:ENSG00000102804|HPRD:07414|Vega:OTTHUMG00000016838 13 13q14 TSC22 domain family, member 1 protein-coding TSC22D1 TSC22 domain family, member 1 O TGFB-stimulated clone 22 homolog|TGFbeta-stimulated clone 22|TSC22 domain family protein 1|cerebral protein 2|regulatory protein TSC-22|transcriptional regulator TSC-22|transforming growth factor beta-1-induced transcript 4 protein|transforming growth factor beta-stimulated protein TSC-22 20121230 -9606 8850 KAT2B - CAF|P|P/CAF|PCAF HGNC:8638|MIM:602303|Ensembl:ENSG00000114166|HPRD:06780|Vega:OTTHUMG00000130481 3 3p24 K(lysine) acetyltransferase 2B protein-coding KAT2B K(lysine) acetyltransferase 2B O CREBBP-associated factor|histone acetylase PCAF|histone acetyltransferase KAT2B|histone acetyltransferase PCAF|lysine acetyltransferase 2B|p300/CBP-associated factor 20121230 -9606 8851 CDK5R1 - CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a HGNC:1775|MIM:603460|Ensembl:ENSG00000176749|HPRD:04586|Vega:OTTHUMG00000132814 17 17q11.2 cyclin-dependent kinase 5, regulatory subunit 1 (p35) protein-coding CDK5R1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) O CDK5 activator 1|TPKII regulatory subunit|cyclin-dependent kinase 5 activator 1|cyclin-dependent kinase 5 regulatory subunit 1|neuronal CDK5 activator|regulatory partner for CDK5 kinase|tau protein kinase II 23kDa subunit 20121230 -9606 8852 AKAP4 RP13-377G1__B.1 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 HGNC:374|MIM:300185|Ensembl:ENSG00000147081|HPRD:02173|Vega:OTTHUMG00000021517 X Xp11.2 A kinase (PRKA) anchor protein 4 protein-coding AKAP4 A kinase (PRKA) anchor protein 4 O A-kinase anchor protein 4|A-kinase anchor protein 82 kDa|cancer/testis antigen 99|major sperm fibrous sheath protein|protein kinase A anchoring protein 4|protein kinase A-anchoring protein 4|testis-specific gene HI 20121230 -9606 8853 ASAP2 - AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 HGNC:2721|MIM:603817|Ensembl:ENSG00000151693|HPRD:04820|Vega:OTTHUMG00000117485 2 2p25|2p24 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 O PYK2 C terminus-associated protein|arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2|centaurin, beta 3|development and differentiation enhancing factor 2|development and differentiation-enhancing factor 2|paxillin-associated protein with ARF GAP activity 3|pyk2 C-terminus-associated protein 20121230 -9606 8854 ALDH1A2 - RALDH(II)|RALDH2|RALDH2-T HGNC:15472|MIM:603687|Ensembl:ENSG00000128918|HPRD:04733|Vega:OTTHUMG00000132624 15 15q21.3 aldehyde dehydrogenase 1 family, member A2 protein-coding ALDH1A2 aldehyde dehydrogenase 1 family, member A2 O RALDH 2|retinal dehydrogenase 2|retinaldehyde-specific dehydrogenase type 2 20121230 -9606 8856 NR1I2 - BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR HGNC:7968|MIM:603065|Ensembl:ENSG00000144852|HPRD:04346|Vega:OTTHUMG00000159400 3 3q12-q13.3 nuclear receptor subfamily 1, group I, member 2 protein-coding NR1I2 nuclear receptor subfamily 1, group I, member 2 O nuclear receptor subfamily 1 group I member 2|orphan nuclear receptor PAR1|orphan nuclear receptor PXR|pregnane X nuclear receptor variant 2|pregnane X receptor|steroid and xenobiotic receptor 20121230 -9606 8857 FCGBP - FC(GAMMA)BP HGNC:13572|Ensembl:ENSG00000090920|HPRD:10956 19 19q13.1 Fc fragment of IgG binding protein protein-coding FCGBP Fc fragment of IgG binding protein O Human Fc gamma BP|IgG Fc binding protein|IgGFc-binding protein|fcgamma-binding protein antigen|fcgammaBP 20121230 -9606 8858 PROZ - PZ HGNC:9460|MIM:176895|Ensembl:ENSG00000126231|HPRD:07182|Vega:OTTHUMG00000017376 13 13q34 protein Z, vitamin K-dependent plasma glycoprotein protein-coding PROZ protein Z, vitamin K-dependent plasma glycoprotein O vitamin K-dependent protein Z 20121230 -9606 8859 STK19 DADB-112B14.2 D6S60|D6S60E|G11|HLA-RP1|RP1 HGNC:11398|MIM:604977|Ensembl:ENSG00000204344|HPRD:07281|Vega:OTTHUMG00000166424 6 6p21.3 serine/threonine kinase 19 protein-coding STK19 serine/threonine kinase 19 O MHC class III HLA-RP1|nuclear serine/threonine protein kinase|serine/threonine-protein kinase 19 20121230 -9606 8861 LDB1 - CLIM2|NLI HGNC:6532|MIM:603451|Ensembl:ENSG00000198728|HPRD:09144|Vega:OTTHUMG00000018950 10 10q24-q25 LIM domain binding 1 protein-coding LDB1 LIM domain binding 1 O CLIM-2|LDB-1|LIM domain-binding factor CLIM2|LIM domain-binding factor-1|LIM domain-binding protein 1|carboxy terminal LIM domain protein 2|carboxyl-terminal LIM domain-binding protein 2|hLdb1|nuclear LIM interactor 20121230 -9606 8862 APLN UNQ471 APEL|XNPEP2 HGNC:16665|MIM:300297|Ensembl:ENSG00000171388|HPRD:02246 X Xq25 apelin protein-coding APLN apelin O AGTRL1 ligand|APJ endogenous ligand 20121230 -9606 8863 PER3 RP3-467L1.3 GIG13 HGNC:8847|MIM:603427|Ensembl:ENSG00000049246|HPRD:09138|Vega:OTTHUMG00000001216 1 1p36.23 period circadian clock 3 protein-coding PER3 period circadian clock 3 O cell growth-inhibiting gene 13 protein|circadian clock protein PERIOD 3|growth-inhibiting protein 13|hPER3|period 3|period circadian protein 3|period circadian protein homolog 3|period homolog 3 20121230 -9606 8864 PER2 - FASPS HGNC:8846|MIM:603426|Ensembl:ENSG00000132326|HPRD:04575|Vega:OTTHUMG00000152884 2 2q37.3 period circadian clock 2 protein-coding PER2 period circadian clock 2 O circadian clock protein PERIOD 2|hPER2|period 2|period circadian protein 2|period circadian protein homolog 2|period homolog 2 20121230 -9606 8867 SYNJ1 - INPP5G HGNC:11503|MIM:604297|Ensembl:ENSG00000159082|HPRD:09182|Vega:OTTHUMG00000064926 21 21q22.2 synaptojanin 1 protein-coding SYNJ1 synaptojanin 1 O inositol 5'-phosphatase (synaptojanin 1)|synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1|synaptic inositol-1,4,5-trisphosphate 5-phosphatase 1|synaptojanin-1|synaptojanin-1, polyphosphoinositide phosphatase 20121230 -9606 8869 ST3GAL5 UNQ2510/PRO5998 SATI|SIAT9|SIATGM3S|ST3GalV HGNC:10872|MIM:604402|Ensembl:ENSG00000115525|HPRD:05098|Vega:OTTHUMG00000130171 2 2p11.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 O CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase|GM3 synthase|ST3Gal V|alpha 2,3-sialyltransferase V|ganglioside GM3 synthase|lactosylceramide alpha-2,3-sialyltransferase|sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase) 20121230 -9606 8870 IER3 DADB-118P11.5 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 HGNC:5392|MIM:602996|Ensembl:ENSG00000137331|HPRD:04295|Vega:OTTHUMG00000031265 6 6p21.3 immediate early response 3 protein-coding IER3 immediate early response 3 O PACAP-responsive gene 1 protein|anti-death protein|differentiation-dependent gene 2 protein|expressed in pancreatic carcinoma|gly96, mouse, homolog of|immediate early protein GLY96|immediate early response 3 protein|immediately early gene X-1|protein DIF-2|radiation-inducible immediate-early gene IEX-1 20121230 -9606 8871 SYNJ2 RP11-266C7.2 INPP5H HGNC:11504|MIM:609410|Ensembl:ENSG00000078269|HPRD:10259|Vega:OTTHUMG00000015904 6 6q25.3 synaptojanin 2 protein-coding SYNJ2 synaptojanin 2 O inositol phosphate 5'-phosphatase 2|synaptic inositol 1,4,5-trisphosphate 5-phosphatase 2|synaptic inositol-1,4,5-trisphosphate 5-phosphatase 2|synaptojanin-2 20121230 -9606 8872 CDC123 RP11-186N15.4 C10orf7|D123 HGNC:16827|Ensembl:ENSG00000151465|HPRD:12586|Vega:OTTHUMG00000017680 10 10p13 cell division cycle 123 homolog (S. cerevisiae) protein-coding CDC123 cell division cycle 123 homolog (S. cerevisiae) O HT-1080|PZ32|cell division cycle protein 123 homolog 20121230 -9606 8874 ARHGEF7 RP11-494P5.1 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB HGNC:15607|MIM:605477|Ensembl:ENSG00000102606|HPRD:05688|Vega:OTTHUMG00000017357 13 13q34 Rho guanine nucleotide exchange factor (GEF) 7 protein-coding ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 O PAK-interacting exchange factor beta|SH3 domain-containing proline-rich protein|guanine nucleotide exchange factor 7|rho guanine nucleotide exchange factor 7 20121230 -9606 8875 VNN2 - FOAP-4|GPI-80 HGNC:12706|MIM:603571|Ensembl:ENSG00000112303|HPRD:04652|Vega:OTTHUMG00000015588 6 6q23-q24 vanin 2 protein-coding VNN2 vanin 2 O Vannin 2|glycosylphosphatidyl inositol-anchored protein GPI-80|pantetheinase|vanin-2|vascular non-inflammatory molecule 2 20121230 -9606 8876 VNN1 - HDLCQ8|Tiff66 HGNC:12705|MIM:603570|Ensembl:ENSG00000112299|HPRD:04651|Vega:OTTHUMG00000015587 6 6q23-q24 vanin 1 protein-coding VNN1 vanin 1 O pantetheinase|pantetheine hydrolase|vanin-1|vannin 1|vascular non-inflammatory molecule 1 20121230 -9606 8877 SPHK1 - SPHK HGNC:11240|MIM:603730|Ensembl:ENSG00000176170|HPRD:04768|Vega:OTTHUMG00000180177 17 17q25.2 sphingosine kinase 1 protein-coding SPHK1 sphingosine kinase 1 O SK 1|SPK 1 20121230 -9606 8878 SQSTM1 - A170|OSIL|PDB3|ZIP3|p60|p62|p62B HGNC:11280|MIM:601530|Ensembl:ENSG00000161011|HPRD:03319|Vega:OTTHUMG00000150643 5 5q35 sequestosome 1 protein-coding SQSTM1 sequestosome 1 O EBI3-associated protein of 60 kDa|EBI3-associated protein p60|EBIAP|oxidative stress induced like|phosphotyrosine independent ligand for the Lck SH2 domain p62|phosphotyrosine-independent ligand for the Lck SH2 domain of 62 kDa|sequestosome-1|ubiquitin-binding protein p62 20121230 -9606 8879 SGPL1 - S1PL|SPL HGNC:10817|MIM:603729|Ensembl:ENSG00000166224|HPRD:07224|Vega:OTTHUMG00000018421 10 10q21 sphingosine-1-phosphate lyase 1 protein-coding SGPL1 sphingosine-1-phosphate lyase 1 O SP-lyase 1|SPL 1|hSPL|sphingosine-1-phosphate aldolase 20121230 -9606 8880 FUBP1 - FBP|FUBP HGNC:4004|MIM:603444|Ensembl:ENSG00000162613|HPRD:10349|Vega:OTTHUMG00000040799 1 1p31.1 far upstream element (FUSE) binding protein 1 protein-coding FUBP1 far upstream element (FUSE) binding protein 1 O DNA helicase V|FUSE-binding protein 1|far upstream element binding protein|far upstream element-binding protein 1|hDH V 20121230 -9606 8881 CDC16 RP11-569D9.4 ANAPC6|APC6|CUT9 HGNC:1720|MIM:603461|Ensembl:ENSG00000130177|HPRD:04587|Vega:OTTHUMG00000017402 13 13q34 cell division cycle 16 homolog (S. cerevisiae) protein-coding CDC16 cell division cycle 16 homolog (S. cerevisiae) O CDC16Hs|anaphase-promoting complex subunit 6|anaphase-promoting complex, subunit 6|cell division cycle protein 16 homolog|cyclosome subunit 6 20121230 -9606 8882 ZNF259 - ZPR1 HGNC:13051|MIM:603901|Ensembl:ENSG00000109917|HPRD:04877|Vega:OTTHUMG00000046114 11 11q23.3 zinc finger protein 259 protein-coding ZNF259 zinc finger protein 259 O zinc finger protein ZPR1 20121230 -9606 8883 NAE1 HPP1 A-116A10.1|APPBP1|ula-1 HGNC:621|MIM:603385|Ensembl:ENSG00000159593|HPRD:04545|Vega:OTTHUMG00000137513 16 16q22 NEDD8 activating enzyme E1 subunit 1 protein-coding NAE1 NEDD8 activating enzyme E1 subunit 1 O APP-BP1|NEDD8-activating enzyme E1 regulatory subunit|NEDD8-activating enzyme E1 subunit|amyloid beta precursor protein binding protein 1, 59kDa|amyloid beta precursor protein-binding protein 1, 59 kDa|amyloid beta precursor protein-binding protein 1, 59kD|amyloid protein-binding protein 1|proto-oncogene protein 1|protooncogene protein 1 20121230 -9606 8884 SLC5A6 - SMVT HGNC:11041|MIM:604024|Ensembl:ENSG00000138074|HPRD:04934|Vega:OTTHUMG00000097075 2 2p23 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 protein-coding SLC5A6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 O Na(+)-dependent multivitamin transporter|Na+-dependent multivitamin transporter|sodium-dependent multivitamin transporter|solute carrier family 5 member 6 20121230 -9606 8886 DDX18 - MrDb HGNC:2741|MIM:606355|Ensembl:ENSG00000088205|HPRD:05894|Vega:OTTHUMG00000058521 2 2q14.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 protein-coding DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 O ATP-dependent RNA helicase DDX18|DEAD box protein 18|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated)|Myc-regulated DEAD box protein 20121230 -9606 8887 TAX1BP1 PRO0105 CALCOCO3|T6BP|TXBP151 HGNC:11575|MIM:605326|Ensembl:ENSG00000106052|HPRD:05618|Vega:OTTHUMG00000023377 7 7p15 Tax1 (human T-cell leukemia virus type I) binding protein 1 protein-coding TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 O TRAF6-binding protein|tax1-binding protein 1 20121230 -9606 8888 MCM3AP - GANP|MAP80|SAC3 HGNC:6946|MIM:603294|Ensembl:ENSG00000160294|HPRD:04483|Vega:OTTHUMG00000090630 21 21q22.3 minichromosome maintenance complex component 3 associated protein protein-coding MCM3AP minichromosome maintenance complex component 3 associated protein O 80 kDa MCM3-associated protein|MCM3 import protein|MCM3 minichromosome maintenance deficient 3 associated protein|germinal center-associated nuclear protein|germinal-centre associated nuclear protein|minichromosome maintenance deficient 3-associated protein 20121230 -9606 8890 EIF2B4 - EIF-2B|EIF2B|EIF2Bdelta HGNC:3260|MIM:606687|Ensembl:ENSG00000115211|HPRD:09459|Vega:OTTHUMG00000151927 2 2p23.3 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa protein-coding EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa O eIF-2B GDP-GTP exchange factor subunit delta|eukaryotic translation initiation factor 2B subunit 4 delta|translation initiation factor eIF-2B subunit delta|translation initiation factor eIF-2b delta subunit 20121230 -9606 8891 EIF2B3 RP5-882O7.2 EIF-2B|EIF2Bgamma HGNC:3259|MIM:606273|Ensembl:ENSG00000070785|HPRD:09379|Vega:OTTHUMG00000008585 1 1p34.1 eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa protein-coding EIF2B3 eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa O eIF-2B GDP-GTP exchange factor subunit gamma|translation initiation factor eIF-2B subunit gamma 20121230 -9606 8892 EIF2B2 - EIF-2Bbeta|EIF2B HGNC:3258|MIM:606454|Ensembl:ENSG00000119718|HPRD:05923|Vega:OTTHUMG00000171764 14 14q24.3 eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa protein-coding EIF2B2 eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa O S20I15|S20III15|eIF-2B GDP-GTP exchange factor subunit beta|translation initiation factor eIF-2B subunit beta 20121230 -9606 8893 EIF2B5 - CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM HGNC:3261|MIM:603945|Ensembl:ENSG00000145191|HPRD:04898|Vega:OTTHUMG00000156840 3 3q27.1 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa protein-coding EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa O eIF-2B GDP-GTP exchange factor subunit epsilon|translation initiation factor eIF-2B subunit epsilon 20121230 -9606 8894 EIF2S2 - EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta HGNC:3266|MIM:603908|Ensembl:ENSG00000125977|HPRD:04882|Vega:OTTHUMG00000032287 20 20q11.2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa protein-coding EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa O eukaryotic translation initiation factor 2 subunit 2|eukaryotic translation initiation factor 2 subunit beta|protein phosphatase 1, regulatory subunit 67 20121230 -9606 8895 CPNE3 - CPN3|PRO1071 HGNC:2316|MIM:604207|Ensembl:ENSG00000085719|HPRD:05016|Vega:OTTHUMG00000163725 8 8q21.3 copine III protein-coding CPNE3 copine III O copine-3 20121230 -9606 8896 BUD31 - Cwc14|EDG-2|EDG2|G10|YCR063W|fSAP17 HGNC:29629|MIM:603477|Ensembl:ENSG00000106245|HPRD:10351|Vega:OTTHUMG00000154602 7 7q22.1 BUD31 homolog (S. cerevisiae) protein-coding BUD31 BUD31 homolog (S. cerevisiae) O G10 maternal transcript homolog|functional spliceosome-associated protein 17|maternal G10 transcript|protein BUD31 homolog|protein EDG-2|protein G10 homolog 20121230 -9606 8897 MTMR3 hCG_2011013 FYVE-DSP1|ZFYVE10 HGNC:7451|MIM:603558|Ensembl:ENSG00000100330|HPRD:09151|Vega:OTTHUMG00000151278 22 22q12.2 myotubularin related protein 3 protein-coding MTMR3 myotubularin related protein 3 O FYVE (Fab1 YGLO23 Vsp27 EEA1 domain) dual-specificity protein phosphatase|FYVE domain-containing dual specificity protein phosphatase 1|myotubularin-related protein 3|zinc finger FYVE domain-containing protein 10|zinc finger, FYVE domain containing 10 20121230 -9606 8898 MTMR2 - CMT4B|CMT4B1 HGNC:7450|MIM:603557|Ensembl:ENSG00000087053|HPRD:04650|Vega:OTTHUMG00000153837 11 11q22 myotubularin related protein 2 protein-coding MTMR2 myotubularin related protein 2 O myotubularin-related protein 2 20121230 -9606 8899 PRPF4B RP5-1013A10.2 PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 HGNC:17346|MIM:602338|Ensembl:ENSG00000112739|HPRD:09087|Vega:OTTHUMG00000014157 6 6p25.2 PRP4 pre-mRNA processing factor 4 homolog B (yeast) protein-coding PRPF4B PRP4 pre-mRNA processing factor 4 homolog B (yeast) O PRP4 kinase|PRP4 pre-mRNA-processing factor 4 homolog|dJ1013A10.1 (PRP4 protein kinase homolog)|protein-serine/threonine kinase|serine/threonine-protein kinase PRP4 homolog 20121230 -9606 8900 CCNA1 - - HGNC:1577|MIM:604036|Ensembl:ENSG00000133101|HPRD:04946|Vega:OTTHUMG00000016733 13 13q12.3-q13 cyclin A1 protein-coding CCNA1 cyclin A1 O cyclin-A1 20121230 -9606 8904 CPNE1 RP1-309K20.2 COPN1|CPN1 HGNC:2314|MIM:604205|Ensembl:ENSG00000214078|HPRD:05014|Vega:OTTHUMG00000032356 20 20q11.22 copine I protein-coding CPNE1 copine I O copine-1 20121230 -9606 8905 AP1S2 DC22 MGC:1902|MRX59|MRXS21|MRXSF|SIGMA1B HGNC:560|MIM:300629|Ensembl:ENSG00000182287|HPRD:04636|Vega:OTTHUMG00000021186 X Xp22.2 adaptor-related protein complex 1, sigma 2 subunit protein-coding AP1S2 adaptor-related protein complex 1, sigma 2 subunit O AP-1 complex subunit sigma-2|adapter-related protein complex 1 sigma-1B subunit|adaptor protein complex AP-1 sigma-1B subunit|clathrin adaptor complex AP1 sigma 1B subunit|clathrin assembly protein complex 1 sigma-1B small chain|golgi adaptor HA1/AP1 adaptin sigma 1B subunit|golgi adaptor HA1/AP1 adaptin sigma-1B subunit|sigma 1B subunit of AP-1 clathrin|sigma-adaptin 1B|sigma1B-adaptin 20121230 -9606 8906 AP1G2 - G2AD HGNC:556|MIM:603534|Ensembl:ENSG00000213983|HPRD:04638|Vega:OTTHUMG00000028760 14 14q11.2 adaptor-related protein complex 1, gamma 2 subunit protein-coding AP1G2 adaptor-related protein complex 1, gamma 2 subunit O AP-1 complex subunit gamma-like 2|clathrin-associated/assembly/adaptor protein, large, gamma-2|gamma2-adaptin 20121230 -9606 8907 AP1M1 - AP47|CLAPM2|CLTNM|MU-1A HGNC:13667|MIM:603535|Ensembl:ENSG00000072958|HPRD:04639|Vega:OTTHUMG00000182323 19 19p13.12 adaptor-related protein complex 1, mu 1 subunit protein-coding AP1M1 adaptor-related protein complex 1, mu 1 subunit O AP-1 complex subunit mu-1|AP-mu chain family member mu1A|HA1 47 kDa subunit|adaptor protein complex AP-1 mu-1 subunit|adaptor-related protein complex 1 mu-1 subunit|clathrin adaptor protein AP47|clathrin assembly protein complex 1 medium chain 1|clathrin assembly protein complex 1, medium chain|clathrin assembly protein complex AP1, mu subunit|clathrin coat assembly protein AP47|clathrin coat-associated protein AP47|golgi adaptor AP-1 47 kDa protein|golgi adaptor HA1/AP1 adaptin mu-1 subunit|mu-adaptin 1|mu1A-adaptin 20121230 -9606 8908 GYG2 - GN-2|GN2 HGNC:4700|MIM:300198|Ensembl:ENSG00000056998|HPRD:02185|Vega:OTTHUMG00000021079 X Xp22.3 glycogenin 2 protein-coding GYG2 glycogenin 2 O glycogenin-2 20121230 -9606 8909 ENDOU - P11|PP11|PRSS26 HGNC:14369|MIM:606720|Ensembl:ENSG00000111405|HPRD:12110|Vega:OTTHUMG00000169670 12 12q13.1 endonuclease, polyU-specific protein-coding ENDOU endonuclease, polyU-specific O 22 serine protease|26 serine protease|placental protein 11|poly(U)-specific endoribonuclease|protein endoU|uridylate-specific endoribonuclease 20121230 -9606 8910 SGCE UNQ433/PRO840 DYT11|ESG HGNC:10808|MIM:604149|Ensembl:ENSG00000127990|HPRD:04999|Vega:OTTHUMG00000022828 7 7q21.3 sarcoglycan, epsilon protein-coding SGCE sarcoglycan, epsilon O dystonia 11, myoclonic|epsilon-SG|epsilon-sarcoglycan 20121230 -9606 8911 CACNA1I RP1-172B20.4 Cav3.3|ca(v)3.3 HGNC:1396|MIM:608230|Ensembl:ENSG00000100346|HPRD:10500|Vega:OTTHUMG00000151096 22 22q13.1 calcium channel, voltage-dependent, T type, alpha 1I subunit protein-coding CACNA1I calcium channel, voltage-dependent, T type, alpha 1I subunit O calcium channel, voltage-dependent, alpha 1I subunit|voltage-dependent T-type calcium channel subunit alpha-1I|voltage-gated calcium channel subunit alpha Cav3.3 20121230 -9606 8912 CACNA1H - CACNA1HB|Cav3.2|ECA6|EIG6 HGNC:1395|MIM:607904|Ensembl:ENSG00000196557|HPRD:07442|Vega:OTTHUMG00000172992 16 16p13.3 calcium channel, voltage-dependent, T type, alpha 1H subunit protein-coding CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit O calcium channel, voltage-dependent, T type, alpha 1Hb subunit|low-voltage-activated calcium channel alpha1 3.2 subunit|low-voltage-activated calcium channel alpha13.2 subunit|voltage dependent t-type calcium channel alpha-1H subunit|voltage-dependent T-type calcium channel subunit alpha-1H|voltage-gated calcium channel alpha subunit Cav3.2|voltage-gated calcium channel alpha subunit CavT.2|voltage-gated calcium channel subunit alpha Cav3.2 20121230 -9606 8913 CACNA1G - Ca(V)T.1|Cav3.1|NBR13 HGNC:1394|MIM:604065|Ensembl:ENSG00000006283|HPRD:04961|Vega:OTTHUMG00000162180 17 17q22 calcium channel, voltage-dependent, T type, alpha 1G subunit protein-coding CACNA1G calcium channel, voltage-dependent, T type, alpha 1G subunit O cav3.1c|voltage-dependent T-type calcium channel subunit alpha-1G|voltage-dependent calcium channel alpha 1G subunit|voltage-gated calcium channel subunit alpha Cav3.1 20121230 -9606 8914 TIMELESS - TIM|TIM1|hTIM HGNC:11813|MIM:603887|Ensembl:ENSG00000111602|HPRD:04864|Vega:OTTHUMG00000170600 12 12q13.3 timeless circadian clock protein-coding TIMELESS timeless circadian clock O Tof1 homolog|protein timeless homolog|timeless circadian clock 1|timeless homolog 20121230 -9606 8915 BCL10 RP11-234D19.2 CARMEN|CIPER|CLAP|c-E10|mE10 HGNC:989|MIM:603517|Ensembl:ENSG00000142867|HPRD:04625|Vega:OTTHUMG00000009965 1 1p22 B-cell CLL/lymphoma 10 protein-coding BCL10 B-cell CLL/lymphoma 10 O B-cell lymphoma/leukemia 10|CARD containing molecule enhancing NF-kB|CARD-containing apoptotic signaling protein|CARD-containing molecule enhancing NF-kappa-B|CARD-containing proapoptotic protein|CED-3/ICH-1 prodomain homologous E10-like regulator|cCARMEN|caspase-recruiting domain-containing protein|cellular homolog of vCARMEN|cellular-E10|hCLAP|mammalian CARD-containing adapter molecule E10 20121230 -9606 8916 HERC3 - - HGNC:4876|MIM:605200|Ensembl:ENSG00000138641|HPRD:16093|Vega:OTTHUMG00000150436 4 4q21 HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3 O HECT domain and RCC1-like domain-containing protein 3|hect domain and RLD 3|probable E3 ubiquitin-protein ligase HERC3 20121230 -9606 8917 HERC2P1 - D15F37S2 HGNC:4869 15 15q13 hect domain and RLD 2 pseudogene 1 pseudo HERC2P1 hect domain and RLD 2 pseudogene 1 O - 20121230 -9606 8918 HERC2P6 - - HGNC:4874 15 15q11.2 hect domain and RLD 2 pseudogene 6 pseudo HERC2P6 hect domain and RLD 2 pseudogene 6 O - 20121230 -9606 8924 HERC2 - D15F37S1|SHEP1|jdf2|p528 HGNC:4868|MIM:605837|Ensembl:ENSG00000128731|HPRD:06905|Vega:OTTHUMG00000129251 15 15q13 HECT and RLD domain containing E3 ubiquitin protein ligase 2 protein-coding HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 O E3 ubiquitin-protein ligase HERC2|hect domain and RCC1-like domain-containing protein 2|hect domain and RLD 2|probable E3 ubiquitin-protein ligase HERC2 20121230 -9606 8925 HERC1 - p532|p619 HGNC:4867|MIM:605109|Ensembl:ENSG00000103657|HPRD:06894|Vega:OTTHUMG00000172433 15 15q22 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 O HECT domain and RCC1-like domain-containing protein 1|guanine nucleotide exchange factor p532|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1|probable E3 ubiquitin-protein ligase HERC1 20121230 -9606 8926 SNURF - - HGNC:11171|Ensembl:ENSG00000214265|HPRD:18083|Vega:OTTHUMG00000129181 15 15q12 SNRPN upstream reading frame protein-coding SNURF SNRPN upstream reading frame O SNRPN upstream reading frame protein 20121230 -9606 8927 BSN - ZNF231 HGNC:1117|MIM:604020|Ensembl:ENSG00000164061|HPRD:04933|Vega:OTTHUMG00000133750 3 3p21.31 bassoon (presynaptic cytomatrix protein) protein-coding BSN bassoon (presynaptic cytomatrix protein) O neuronal double zinc finger protein|protein bassoon|zinc finger protein 231 20121230 -9606 8928 FOXH1 - FAST-1|FAST1 HGNC:3814|MIM:603621|Ensembl:ENSG00000160973|HPRD:04689|Vega:OTTHUMG00000165172 8 8q24.3 forkhead box H1 protein-coding FOXH1 forkhead box H1 O TGF-beta/activin signal transducer|fast-2|forkhead activin signal transducer 2|forkhead activin signal transducer-1|forkhead box protein H1|hFAST-1 20121230 -9606 8929 PHOX2B - NBLST2|NBPhox|PMX2B HGNC:9143|MIM:603851|Ensembl:ENSG00000109132|HPRD:09157|Vega:OTTHUMG00000099379 4 4p12 paired-like homeobox 2b protein-coding PHOX2B paired-like homeobox 2b O PHOX2B homeodomain protein|neuroblastoma Phox|neuroblastoma paired-type homeobox protein|paired mesoderm homeobox 2b|paired mesoderm homeobox protein 2B 20121230 -9606 8930 MBD4 - MED1 HGNC:6919|MIM:603574|Ensembl:ENSG00000129071|HPRD:04654|Vega:OTTHUMG00000159463 3 3q21.3 methyl-CpG binding domain protein 4 protein-coding MBD4 methyl-CpG binding domain protein 4 O 3,N(4)-ethenocytosine glycosylase|G/5-fluorouracil mismatch glycosylase with biphasic kinetics|G/T mismatch glycosylase|G/U mismatch glycosylase|methyl-CpG-binding domain protein 4|methyl-CpG-binding endonuclease 1|methyl-CpG-binding protein MBD4|mismatch-specific DNA N-glycosylase|putative methyl-CpG binding protein 20121230 -9606 8932 MBD2 - DMTase|NY-CO-41 HGNC:6917|MIM:603547|Ensembl:ENSG00000134046|HPRD:04647|Vega:OTTHUMG00000132705 18 18q21 methyl-CpG binding domain protein 2 protein-coding MBD2 methyl-CpG binding domain protein 2 O demethylase|methyl-CpG-binding domain protein 2 20121230 -9606 8933 FAM127A - CXX1|MAR8C|MART8C|Mar8|Mart8 HGNC:2569|MIM:300213|Ensembl:ENSG00000134590|HPRD:02197|Vega:OTTHUMG00000022465 X Xq26 family with sequence similarity 127, member A protein-coding FAM127A family with sequence similarity 127, member A O CAAX box 1|mammalian retrotransposon derived protein 8C|protein FAM127A 20121230 -9606 8934 RAB7L1 - RAB7L HGNC:9789|MIM:603949|Ensembl:ENSG00000117280|HPRD:11962|Vega:OTTHUMG00000035998 1 1q32 RAB7, member RAS oncogene family-like 1 protein-coding RAB7L1 RAB7, member RAS oncogene family-like 1 O rab-7-like protein 1|ras-related protein Rab-7L1 20121230 -9606 8935 SKAP2 - PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R HGNC:15687|MIM:605215|Ensembl:ENSG00000005020|HPRD:05558|Vega:OTTHUMG00000023495 7 7p15.2 src kinase associated phosphoprotein 2 protein-coding SKAP2 src kinase associated phosphoprotein 2 O Fyn-associated phosphoprotein SKAP55 homologue|Pyk2/RAFTK-associated protein|SKAP-55HOM|SKAP55 homolog|retinoic acid-induced protein 70|src family associated phosphoprotein 2|src family-associated phosphoprotein 2|src kinase-associated phosphoprotein 2|src kinase-associated phosphoprotein 55-related protein|src kinase-associated phosphoprotein of 55-related protein|src-associated adapter protein with PH and SH3 domains|src-associated adaptor protein 20121230 -9606 8936 WASF1 RP11-181P4.1 SCAR1|WAVE|WAVE1 HGNC:12732|MIM:605035|Ensembl:ENSG00000112290|HPRD:05434|Vega:OTTHUMG00000015357 6 6q21 WAS protein family, member 1 protein-coding WASF1 WAS protein family, member 1 O WASP family protein member 1|homology of dictyostelium scar 1|protein WAVE-1|verprolin homology domain-containing protein 1|wiskott-Aldrich syndrome protein family member 1 20121230 -9606 8938 BAIAP3 AL031709.1 BAP3 HGNC:948|MIM:604009|Ensembl:ENSG00000007516|HPRD:04925|Vega:OTTHUMG00000047833 16 16p13.3 BAI1-associated protein 3 protein-coding BAIAP3 BAI1-associated protein 3 O BAI-associated protein 3 20121230 -9606 8939 FUBP3 RP11-57C19.3 FBP3 HGNC:4005|MIM:603536|Ensembl:ENSG00000107164|Vega:OTTHUMG00000020809 9 9q34.11 far upstream element (FUSE) binding protein 3 protein-coding FUBP3 far upstream element (FUSE) binding protein 3 O FUSE-binding protein 3|far upstream element-binding protein 3 20121230 -9606 8940 TOP3B - - HGNC:11993|MIM:603582|Ensembl:ENSG00000100038|HPRD:04662|Vega:OTTHUMG00000167438 22 22q11.22 topoisomerase (DNA) III beta protein-coding TOP3B topoisomerase (DNA) III beta O DNA topoisomerase 3-beta-1|DNA topoisomerase III beta-1|topoisomerase III beta 20121230 -9606 8941 CDK5R2 - NCK5AI|P39|p39nck5ai HGNC:1776|MIM:603764|Ensembl:ENSG00000171450|HPRD:04790|Vega:OTTHUMG00000133083 2 2q35 cyclin-dependent kinase 5, regulatory subunit 2 (p39) protein-coding CDK5R2 cyclin-dependent kinase 5, regulatory subunit 2 (p39) O CDK5 activator 2|cyclin-dependent kinase 5 activator 2|cyclin-dependent kinase 5 activator isoform p39i|cyclin-dependent kinase 5 regulatory subunit 2|neuronal CDK5 activator isoform|p39I 20121230 -9606 8942 KYNU - - HGNC:6469|MIM:605197|Ensembl:ENSG00000115919|HPRD:08940|Vega:OTTHUMG00000131829 2 2q22.2 kynureninase protein-coding KYNU kynureninase O kynureninase (L-kynurenine hydrolase) 20121230 -9606 8943 AP3D1 PRO0039 ADTD|hBLVR HGNC:568|MIM:607246|Ensembl:ENSG00000065000|HPRD:06260|Vega:OTTHUMG00000180354 19 19p13.3 adaptor-related protein complex 3, delta 1 subunit protein-coding AP3D1 adaptor-related protein complex 3, delta 1 subunit O AP-3 complex delta subunit, partial CDS|AP-3 complex subunit delta|AP-3 complex subunit delta-1|adapter-related protein complex 3 subunit delta-1|adaptin, delta|delta adaptin|delta-adaptin, partial CDS|subunit of putative vesicle coat adaptor complex AP-3 20121230 -9606 8944 SNORD73A - RNU73|RNU73A|U73|U73a HGNC:10235|MIM:603568 4 4q31.3 small nucleolar RNA, C/D box 73A snoRNA SNORD73A small nucleolar RNA, C/D box 73A O - 20121230 -9606 8945 BTRC RP11-529I10.2 BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP HGNC:1144|MIM:603482|Ensembl:ENSG00000166167|HPRD:04596|Vega:OTTHUMG00000018932 10 10q24.32 beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding BTRC beta-transducin repeat containing E3 ubiquitin protein ligase O E3RSIkappaB|F-box and WD repeats protein beta-TrCP|F-box and WD-repeat protein 1B|F-box/WD repeat-containing protein 1A|beta-TrCP1|epididymis tissue protein Li 2a|pIkappaBalpha-E3 receptor subunit 20121230 -9606 8968 HIST1H3F - H3/i|H3FI HGNC:4773|MIM:602816|Ensembl:ENSG00000256316|HPRD:11910|Vega:OTTHUMG00000014435 6 6p22.2 histone cluster 1, H3f protein-coding HIST1H3F histone cluster 1, H3f O H3 histone family, member I|histone 1, H3f|histone H3.1|histone H3/i 20121230 -9606 8969 HIST1H2AG - H2A.1b|H2A/p|H2AFP|pH2A/f HGNC:4737|Ensembl:ENSG00000196787|HPRD:13654|Vega:OTTHUMG00000014469 6 6p22.1 histone cluster 1, H2ag protein-coding HIST1H2AG histone cluster 1, H2ag O H2A histone family, member P|H2A.1|histone 1, H2ag|histone H2A type 1|histone H2A/p 20121230 -9606 8970 HIST1H2BJ - H2B/r|H2BFR HGNC:4761|Ensembl:ENSG00000124635|HPRD:13657|Vega:OTTHUMG00000014470 6 6p22.1 histone cluster 1, H2bj protein-coding HIST1H2BJ histone cluster 1, H2bj O H2B histone family, member R|histone 1, H2bj|histone H2B type 1-J|histone H2B.1|histone H2B.r 20121230 -9606 8971 H1FX - H1X HGNC:4722|MIM:602785|Ensembl:ENSG00000184897|HPRD:04151|Vega:OTTHUMG00000159450 3 3q21.3 H1 histone family, member X protein-coding H1FX H1 histone family, member X O histone H1x 20121230 -9606 8972 MGAM - MG|MGA HGNC:7043|MIM:154360|Ensembl:ENSG00000257335|HPRD:01104|Vega:OTTHUMG00000158395 7 7q34 maltase-glucoamylase (alpha-glucosidase) protein-coding MGAM maltase-glucoamylase (alpha-glucosidase) O alpha-glucosidase|brush border hydrolase|maltase-glucoamylase, intestinal 20121230 -9606 8973 CHRNA6 - CHNRA6 HGNC:15963|MIM:606888|Ensembl:ENSG00000147434|HPRD:06056|Vega:OTTHUMG00000165275 8 8p11.21 cholinergic receptor, nicotinic, alpha 6 (neuronal) protein-coding CHRNA6 cholinergic receptor, nicotinic, alpha 6 (neuronal) O acetylcholine receptor, nicotinic, alpha 6 (neuronal)|cholinergic receptor, nicotinic, alpha polypeptide 6|neuronal acetylcholine receptor subunit alpha-6 20121230 -9606 8974 P4HA2 UNQ290/PRO330 - HGNC:8547|MIM:600608|Ensembl:ENSG00000072682|HPRD:11862|Vega:OTTHUMG00000059647 5 5q31 prolyl 4-hydroxylase, alpha polypeptide II protein-coding P4HA2 prolyl 4-hydroxylase, alpha polypeptide II O 4-PH alpha 2|4-PH alpha-2|C-P4Halpha(II)|collagen prolyl 4-hydroxylase alpha(II)|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II|procollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-2|prolyl 4-hydroxylase subunit alpha-2 20121230 -9606 8975 USP13 - ISOT3|IsoT-3 HGNC:12611|MIM:603591|Ensembl:ENSG00000058056|HPRD:04666|Vega:OTTHUMG00000157783 3 3q26.2-q26.3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) O deubiquitinating enzyme 13|isopeptidase T-3|ubiquitin carboxyl-terminal hydrolase 13|ubiquitin specific protease 13 (isopeptidase T-3)|ubiquitin thioesterase 13|ubiquitin thiolesterase 13|ubiquitin-specific-processing protease 13 20121230 -9606 8976 WASL - N-WASP|NWASP HGNC:12735|MIM:605056|Ensembl:ENSG00000106299|HPRD:05448|Vega:OTTHUMG00000157346 7 7q31.3 Wiskott-Aldrich syndrome-like protein-coding WASL Wiskott-Aldrich syndrome-like O Wiskott-Aldrich syndrome gene-like|neural Wiskott-Aldrich syndrome protein 20121230 -9606 8985 PLOD3 - LH3 HGNC:9083|MIM:603066|Ensembl:ENSG00000106397|HPRD:04347|Vega:OTTHUMG00000157111 7 7q22 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 protein-coding PLOD3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 O lysine hydroxylase 3|lysyl hydroxlase 3|lysyl hydroxylase 3|procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 20121230 -9606 8986 RPS6KA4 - MSK2|RSK-B HGNC:10433|MIM:603606|Ensembl:ENSG00000162302|HPRD:04677|Vega:OTTHUMG00000046094 11 11q11-q13 ribosomal protein S6 kinase, 90kDa, polypeptide 4 protein-coding RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4 O 90 kDa ribosomal protein S6 kinase 4|RSKB|S6K-alpha-4|mitogen- and stress-activated protein kinase 2|nuclear mitogen- and stress-activated protein kinase 2|ribosomal protein S6 kinase alpha 4|ribosomal protein S6 kinase alpha-4|ribosomal protein kinase B 20121230 -9606 8987 STBD1 GENX-3414 GENEX3414 HGNC:24854|MIM:607406|Ensembl:ENSG00000118804|HPRD:08460|Vega:OTTHUMG00000130109 4 4q21.1 starch binding domain 1 protein-coding STBD1 starch binding domain 1 O genethonin 1|starch-binding domain-containing protein 1 20121230 -9606 8988 HSPB3 - DHMN2C|HMN2C|HSPL27 HGNC:5248|MIM:604624|Ensembl:ENSG00000169271|HPRD:06861|Vega:OTTHUMG00000096995 5 5q11.2 heat shock 27kDa protein 3 protein-coding HSPB3 heat shock 27kDa protein 3 O HSP 17|heat shock 17 kDa protein|heat shock protein beta-3|protein 3 20121230 -9606 8989 TRPA1 - ANKTM1 HGNC:497|MIM:604775|Ensembl:ENSG00000104321|HPRD:09208|Vega:OTTHUMG00000164516 8 8q13 transient receptor potential cation channel, subfamily A, member 1 protein-coding TRPA1 transient receptor potential cation channel, subfamily A, member 1 O ankyrin-like with transmembrane domains 1|ankyrin-like with transmembrane domains protein 1|transformation-sensitive protein p120|transient receptor potential cation channel subfamily A member 1 20121230 -9606 8991 SELENBP1 RP11-126K1.7 LPSB|SBP56|SP56|hSBP HGNC:10719|MIM:604188|Ensembl:ENSG00000143416|HPRD:05007|Vega:OTTHUMG00000012498 1 1q21.3 selenium binding protein 1 protein-coding SELENBP1 selenium binding protein 1 O 56 kDa selenium-binding protein|selenium-binding protein 1 20121230 -9606 8992 ATP6V0E1 - ATP6H|ATP6V0E|M9.2|Vma21|Vma21p HGNC:863|MIM:603931|Ensembl:ENSG00000113732|HPRD:04894|Vega:OTTHUMG00000130518 5 5q35.1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 protein-coding ATP6V0E1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 O H(+)-transporting two-sector ATPase, subunit H|V-ATPase 9.2 kDa membrane accessory protein|V-ATPase H subunit|V-ATPase M9.2 subunit|V-ATPase subunit e 1|V-type proton ATPase subunit e 1|vacuolar ATP synthase subunit H|vacuolar proton pump H subunit|vacuolar proton pump subunit e 1|vacuolar proton-ATPase subunit M9.2 20121230 -9606 8993 PGLYRP1 SBBI68 PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L HGNC:8904|MIM:604963|Ensembl:ENSG00000008438|HPRD:05393 19 19q13.2-q13.3 peptidoglycan recognition protein 1 protein-coding PGLYRP1 peptidoglycan recognition protein 1 O TNF superfamily, member 3 (LTB)-like (peptidoglycan recognition protein) 20121230 -9606 8994 LIMD1 - - HGNC:6612|MIM:604543|Ensembl:ENSG00000144791|HPRD:05177|Vega:OTTHUMG00000133453 3 3p21.3 LIM domains containing 1 protein-coding LIMD1 LIM domains containing 1 O LIM domain-containing protein 1 20121230 -9606 8995 TNFSF18 RP1-15D23.1 AITRL|GITRL|TL6|hGITRL HGNC:11932|MIM:603898|Ensembl:ENSG00000120337|HPRD:04874|Vega:OTTHUMG00000034835 1 1q23 tumor necrosis factor (ligand) superfamily, member 18 protein-coding TNFSF18 tumor necrosis factor (ligand) superfamily, member 18 O AITR ligand|GITR ligand|activation-inducible TNF-related ligand|glucocorticoid-induced TNF-related ligand|glucocorticoid-induced TNFR-related protein ligand|tumor necrosis factor ligand superfamily member 18 20121230 -9606 8996 NOL3 - ARC|FCM|MYP|NOP|NOP30 HGNC:7869|MIM:605235|Ensembl:ENSG00000140939|HPRD:05572|Vega:OTTHUMG00000173316 16 16q22.1 nucleolar protein 3 (apoptosis repressor with CARD domain) protein-coding NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain) O muscle-enriched cytoplasmic protein|nucleolar protein 3|nucleolar protein of 30 kDa 20121230 -9606 8997 KALRN hCG_2022551 ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD HGNC:4814|MIM:604605|Ensembl:ENSG00000160145|HPRD:06859|HPRD:12169|Vega:OTTHUMG00000125545 3 3q21.2 kalirin, RhoGEF kinase protein-coding KALRN kalirin, RhoGEF kinase O huntingtin-associated protein interacting protein (duo)|kalirin|serine/threonine kinase with Dbl- and pleckstrin homology domains|serine/threonine-protein kinase with Dbl- and pleckstrin homology domain 20121230 -9606 8999 CDKL2 - KKIAMRE|P56 HGNC:1782|MIM:603442|Ensembl:ENSG00000138769|HPRD:16021|Vega:OTTHUMG00000130103 4 4q21.1 cyclin-dependent kinase-like 2 (CDC2-related kinase) protein-coding CDKL2 cyclin-dependent kinase-like 2 (CDC2-related kinase) O CDC2-related kinase|cyclin-dependent kinase-like 2|p56 KKIAMRE protein kinase|protein kinase p56 KKIAMRE|serine/threonine protein kinase KKIAMRE|serine/threonine-protein kinase KKIAMRE 20121230 -9606 9001 HAP1 - HAP2|HIP5|HLP|hHLP1 HGNC:4812|MIM:600947|Ensembl:ENSG00000173805|HPRD:02972|Vega:OTTHUMG00000133498 17 17q21.2-q21.3 huntingtin-associated protein 1 protein-coding HAP1 huntingtin-associated protein 1 O HAP-1|huntingtin-associated protein 2|neuroan 1 20121230 -9606 9002 F2RL3 - PAR4 HGNC:3540|MIM:602779|Ensembl:ENSG00000127533|HPRD:04148 19 19p12 coagulation factor II (thrombin) receptor-like 3 protein-coding F2RL3 coagulation factor II (thrombin) receptor-like 3 O PAR-4|protease-activated receptor-4|proteinase-activated receptor 4|thrombin receptor-like 3 20121230 -9606 9013 TAF1C - MGC:39976|SL1|TAFI110|TAFI95 HGNC:11534|MIM:604905|Ensembl:ENSG00000103168|HPRD:05364|Vega:OTTHUMG00000176665 16 16q24 TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa protein-coding TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa O RNA polymerase I-specific TBP-associated factor 110 kDa|SL1, 110kD subunit|TATA box-binding protein-associated factor 1C|TATA box-binding protein-associated factor RNA polymerase I subunit C|TBP-associated factor 1C|transcription factor SL1|transcription initiation factor SL1/TIF-IB subunit C 20121230 -9606 9014 TAF1B - MGC:9349|RAF1B|RAFI63|SL1|TAFI63 HGNC:11533|MIM:604904|Ensembl:ENSG00000115750|HPRD:05363|Vega:OTTHUMG00000151673 2 2p25 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa O RNA polymerase I-specific TBP-associated factor 63 kDa|SL1, 63kD subunit|TATA box-binding protein-associated factor 1B|TATA box-binding protein-associated factor RNA polymerase I subunit B|TBP-associated factor 1B|transcription initiation factor SL1/TIF-IB subunit B 20121230 -9606 9015 TAF1A RP11-378J18.2 MGC:17061|RAFI48|SL1|TAFI48 HGNC:11532|MIM:604903|Ensembl:ENSG00000143498|HPRD:05362|Vega:OTTHUMG00000037544 1 1q42 TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa protein-coding TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa O RNA polymerase I-specific TBP-associated factor 48 kDa|SL1, 48kD subunit|TATA box-binding protein-associated factor 1A|TATA box-binding protein-associated factor RNA polymerase I subunit A|TBP-associated factor 1A|transcription factor SL1|transcription initiation factor SL1/TIF-IB subunit A 20121230 -9606 9016 SLC25A14 RP1-20I3.5 BMCP1|UCP5 HGNC:10984|MIM:300242|Ensembl:ENSG00000102078|HPRD:02214|Vega:OTTHUMG00000022394 X Xq24 solute carrier family 25 (mitochondrial carrier, brain), member 14 protein-coding SLC25A14 solute carrier family 25 (mitochondrial carrier, brain), member 14 O brain mitochondrial carrier protein 1|mitochondrial uncoupling protein 5|solute carrier family 25 member 14 20121230 -9606 9019 MPZL1 RP1-313L4.1 MPZL1b|PZR|PZR1b|PZRa|PZRb HGNC:7226|MIM:604376|Ensembl:ENSG00000197965|HPRD:05086|Vega:OTTHUMG00000034571 1 1q24.2 myelin protein zero-like 1 protein-coding MPZL1 myelin protein zero-like 1 O immunoglobulin family transmembrane protein|myelin protein zero-like protein 1|protein zero related|protein zero-related 20121230 -9606 9020 MAP3K14 - FTDCR1B|HS|HSNIK|NIK HGNC:6853|MIM:604655|HPRD:05230 17 17q21 mitogen-activated protein kinase kinase kinase 14 protein-coding MAP3K14 mitogen-activated protein kinase kinase kinase 14 O NF-kappa-beta-inducing kinase|serine/threonine protein-kinase|serine/threonine-protein kinase NIK 20121230 -9606 9021 SOCS3 - ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 HGNC:19391|MIM:604176|Ensembl:ENSG00000184557|HPRD:05006|Vega:OTTHUMG00000177513 17 17q25.3 suppressor of cytokine signaling 3 protein-coding SOCS3 suppressor of cytokine signaling 3 O CIS-3|STAT-induced STAT inhibitor 3|cytokine-induced SH2 protein 3|cytokine-inducible SH2 protein 3 20121230 -9606 9022 CLIC3 RP11-229P13.3 - HGNC:2064|MIM:606533|Ensembl:ENSG00000169583|HPRD:05941|Vega:OTTHUMG00000020954 9 9q34.3 chloride intracellular channel 3 protein-coding CLIC3 chloride intracellular channel 3 O chloride intracellular channel protein 3 20121230 -9606 9023 CH25H - C25H HGNC:1907|MIM:604551|Ensembl:ENSG00000138135|HPRD:05183|Vega:OTTHUMG00000018705 10 10q23 cholesterol 25-hydroxylase protein-coding CH25H cholesterol 25-hydroxylase O cholesterol 25-monooxygenase|h25OH 20121230 -9606 9024 BRSK2 HUSSY-12 C11orf7|PEN11B|SAD1|STK29 HGNC:11405|MIM:609236|Ensembl:ENSG00000174672|Vega:OTTHUMG00000167089 11 11p15.5 BR serine/threonine kinase 2 protein-coding BRSK2 BR serine/threonine kinase 2 O BR serine/threonine-protein kinase 2|brain-selective kinase 2|brain-specific serine/threonine-protein kinase 2|protein kinase SAD1B|serine/threonine-protein kinase 29|serine/threonine-protein kinase BRSK2|serine/threonine-protein kinase SAD-A 20121230 -9606 9025 RNF8 - hRNF8 HGNC:10071|MIM:611685|Ensembl:ENSG00000112130|HPRD:11521|Vega:OTTHUMG00000014620 6 6p21.3 ring finger protein 8, E3 ubiquitin protein ligase protein-coding RNF8 ring finger protein 8, E3 ubiquitin protein ligase O C3HC4-type zinc finger protein|E3 ubiquitin-protein ligase RNF8|UBC13/UEV-interacting ring finger protein|ring finger protein (C3HC4 type) 8 20121230 -9606 9026 HIP1R - HIP12|HIP3|ILWEQ HGNC:18415|MIM:605613|Ensembl:ENSG00000130787|HPRD:10412|Vega:OTTHUMG00000168765 12 12q24 huntingtin interacting protein 1 related protein-coding HIP1R huntingtin interacting protein 1 related O HIP-12|HIP1-related protein|huntingtin interacting protein 12|huntingtin-interacting protein 1-related protein|huntingtin-interacting protein 12 20121230 -9606 9027 NAT8 - ATase2|CML1|GLA|Hcml1|TSC501|TSC510 HGNC:18069|MIM:606716|Ensembl:ENSG00000144035|HPRD:08413|Vega:OTTHUMG00000129818 2 2p13.2 N-acetyltransferase 8 (GCN5-related, putative) protein-coding NAT8 N-acetyltransferase 8 (GCN5-related, putative) O N-acetyltransferase 8 (camello like)|camello-like protein 1|kidney- and liver-specific gene product|probable N-acetyltransferase 8 20121230 -9606 9028 RHBDL1 LA16c-313D11.5 RHBDL|RRP HGNC:10007|MIM:603264|Ensembl:ENSG00000103269|HPRD:07050|Vega:OTTHUMG00000121141 16 16p13.3 rhomboid, veinlet-like 1 (Drosophila) protein-coding RHBDL1 rhomboid, veinlet-like 1 (Drosophila) O rhomboid, drosophila, homolog of|rhomboid-like protein 1|rhomboid-related protein 1 20121230 -9606 9030 ERDA1 - - HGNC:3442|MIM:603279 17 17q21.3 expanded repeat domain, CAG/CTG 1 other ERDA1 expanded repeat domain, CAG/CTG 1 O - 20080828 -9606 9031 BAZ1B - WBSCR10|WBSCR9|WSTF HGNC:961|MIM:605681|Ensembl:ENSG00000009954|HPRD:10416|Vega:OTTHUMG00000023847 7 7q11.23 bromodomain adjacent to zinc finger domain, 1B protein-coding BAZ1B bromodomain adjacent to zinc finger domain, 1B O hWALp2|transcription factor WSTF|tyrosine-protein kinase BAZ1B|williams syndrome transcription factor|williams-Beuren syndrome chromosomal region 10 protein|williams-Beuren syndrome chromosomal region 9 protein 20121230 -9606 9032 TM4SF5 - - HGNC:11857|MIM:604657|Ensembl:ENSG00000142484|HPRD:06877|Vega:OTTHUMG00000090776 17 17p13.3 transmembrane 4 L six family member 5 protein-coding TM4SF5 transmembrane 4 L six family member 5 O tetraspan transmembrane protein L6H|transmembrane 4 L6 family member 5|transmembrane 4 superfamily member 5 20121230 -9606 9033 PKD2L1 - PCL|PKD2L|PKDL|TRPP3 HGNC:9011|MIM:604532|Ensembl:ENSG00000107593|HPRD:16063|Vega:OTTHUMG00000018910 10 10q24 polycystic kidney disease 2-like 1 protein-coding PKD2L1 polycystic kidney disease 2-like 1 O polycystic kidney disease 2-like 1 protein|polycystin-2 homolog|polycystin-2L1|polycystin-L|polycystin-L1|transient receptor potential cation channel, subfamily P, member 3 20121230 -9606 9034 CCRL2 - CKRX|CRAM|CRAM-A|CRAM-B|HCR HGNC:1612|MIM:608379|Ensembl:ENSG00000121797|HPRD:16327|Vega:OTTHUMG00000156318 3 3p21 chemokine (C-C motif) receptor-like 2 protein-coding CCRL2 chemokine (C-C motif) receptor-like 2 O C-C chemokine receptor-like 2|chemokine receptor CCR11|chemokine receptor X|putative MCP-1 chemokine receptor 20121230 -9606 9037 SEMA5A - SEMAF|semF HGNC:10736|MIM:609297|Ensembl:ENSG00000112902|HPRD:10219|Vega:OTTHUMG00000090501 5 5p15.2 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A protein-coding SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A O sema F|semaphorin F|semaphorin-5A|semaphorin-F 20121230 -9606 9038 TAAR5 - PNR|RP11-295F4.5 HGNC:30236|MIM:607405|Ensembl:ENSG00000135569|HPRD:08459|Vega:OTTHUMG00000015581 6 6q23 trace amine associated receptor 5 protein-coding TAAR5 trace amine associated receptor 5 O putative neurotransmitter receptor|taR-5|trace amine receptor 5|trace amine-associated receptor 5 20121230 -9606 9039 UBA3 - UBE1C|hUBA3 HGNC:12470|MIM:603172|Ensembl:ENSG00000144744|HPRD:04413|Vega:OTTHUMG00000154325 3 3p24.3-p13 ubiquitin-like modifier activating enzyme 3 protein-coding UBA3 ubiquitin-like modifier activating enzyme 3 O NEDD8-activating enzyme E1 catalytic subunit|NEDD8-activating enzyme E1C|Nedd8-activating enzyme hUba3|UBA3, ubiquitin-activating enzyme E1 homolog|ubiquitin-activating enzyme 3|ubiquitin-activating enzyme E1C (UBA3 homolog, yeast)|ubiquitin-activating enzyme E1C (homologous to yeast UBA3)|ubiquitin-like modifier-activating enzyme 3 20121230 -9606 9040 UBE2M - UBC-RS2|UBC12|hUbc12 HGNC:12491|MIM:603173|Ensembl:ENSG00000130725|HPRD:04414 19 19q13.43 ubiquitin-conjugating enzyme E2M protein-coding UBE2M ubiquitin-conjugating enzyme E2M O NEDD8 carrier protein|NEDD8 protein ligase|NEDD8-conjugating enzyme Ubc12|ubiquitin carrier protein M|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)|ubiquitin-protein ligase M|yeast UBC12 homolog 20121230 -9606 9043 SPAG9 HLC6 CT89|HLC-6|HLC4|JIP-4|JIP4|JLP|PHET|PIG6 HGNC:14524|MIM:605430|Ensembl:ENSG00000008294|HPRD:10398|Vega:OTTHUMG00000162316 17 17q21.33 sperm associated antigen 9 protein-coding SPAG9 sperm associated antigen 9 O C-Jun-amino-terminal kinase-interacting protein 4|JNK interacting protein|JNK/SAPK-associated protein|Max-binding protein|c-Jun NH2-terminal kinase-associated leucine zipper protein|cancer/testis antigen 89|human lung cancer oncogene 6 protein|lung cancer oncogene 4|mitogen-activated protein kinase 8-interacting protein 4|proliferation-inducing gene 6|protein highly expressed in testis|sperm surface protein|sunday driver 1 20121230 -9606 9044 BTAF1 - MOT1|TAF(II)170|TAF172|TAFII170 HGNC:17307|MIM:605191|Ensembl:ENSG00000095564|HPRD:05546|Vega:OTTHUMG00000018752 10 10q22-q23 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae) protein-coding BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae) O ATP-dependent helicase BTAF1|B-TFIID transcription factor-associated 170 kDa subunit|TATA-binding protein-associated factor 172|TBP-associated factor 172 20121230 -9606 9045 RPL14 - CAG-ISL-7|CTG-B33|L14|RL14|hRL14 HGNC:10305|Ensembl:ENSG00000188846|HPRD:10617|Vega:OTTHUMG00000156046 3 3p22-p21.2 ribosomal protein L14 protein-coding RPL14 ribosomal protein L14 O 60S ribosomal protein L14 20121230 -9606 9046 DOK2 - p56DOK|p56dok-2 HGNC:2991|MIM:604997|Ensembl:ENSG00000147443|HPRD:05411|Vega:OTTHUMG00000131075 8 8p21.3 docking protein 2, 56kDa protein-coding DOK2 docking protein 2, 56kDa O docking protein 2|downstream of tyrosine kinase 2|p56(dok-2) 20121230 -9606 9047 SH2D2A RP11-66D17.12-002 F2771|SCAP|TSAD|VRAP HGNC:10821|MIM:604514|Ensembl:ENSG00000027869|HPRD:05152|Vega:OTTHUMG00000041305 1 1q21 SH2 domain containing 2A protein-coding SH2D2A SH2 domain containing 2A O SH2 domain protein 2A|SH2 domain-containing protein 2A|T cell specific adapter protein TSAd|T lymphocyte specific adaptor protein|VEGF receptor-associated protein 20121230 -9606 9048 ARTN - ENOVIN|EVN|NBN HGNC:727|MIM:603886|Ensembl:ENSG00000117407|HPRD:04863|Vega:OTTHUMG00000007705 1 1p33-p32 artemin protein-coding ARTN artemin O neublastin|neurotrophic factor 20121230 -9606 9049 AIP - ARA9|FKBP16|FKBP37|SMTPHN|XAP-2|XAP2 HGNC:358|MIM:605555|Ensembl:ENSG00000110711|HPRD:10408|Vega:OTTHUMG00000167674 11 11q13.3 aryl hydrocarbon receptor interacting protein protein-coding AIP aryl hydrocarbon receptor interacting protein O AH receptor-interacting protein|HBV X-associated protein 2|immunophilin homolog ARA9 20121230 -9606 9050 PSTPIP2 - MAYP HGNC:9581|Ensembl:ENSG00000152229|HPRD:06687|Vega:OTTHUMG00000152674 18 18q12 proline-serine-threonine phosphatase interacting protein 2 protein-coding PSTPIP2 proline-serine-threonine phosphatase interacting protein 2 O PEST phosphatase-interacting protein 2|proline-serine-threonine phosphatase-interacting protein 2 20121230 -9606 9051 PSTPIP1 - CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP HGNC:9580|MIM:606347|Ensembl:ENSG00000140368|HPRD:05891|Vega:OTTHUMG00000172594 15 15q24-q25.1 proline-serine-threonine phosphatase interacting protein 1 protein-coding PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 O CD2 antigen-binding protein 1|CD2 cytoplasmic tail-binding protein|CD2-binding protein 1|PEST phosphatase-interacting protein 1|proline-serine-threonine phosphatase-interacting protein 1 20121230 -9606 9052 GPRC5A - GPCR5A|RAI3|RAIG1 HGNC:9836|MIM:604138|Ensembl:ENSG00000013588|HPRD:16037|Vega:OTTHUMG00000168710 12 12p13-p12.3 G protein-coupled receptor, family C, group 5, member A protein-coding GPRC5A G protein-coupled receptor, family C, group 5, member A O G-protein coupled receptor family C group 5 member A|RAIG-1|orphan G-protein-coupling receptor PEIG-1|retinoic acid induced 3|retinoic acid responsive|retinoic acid-induced gene 1 protein|retinoic acid-induced protein 3 20121230 -9606 9053 MAP7 - E-MAP-115|EMAP115 HGNC:6869|MIM:604108|Ensembl:ENSG00000135525|HPRD:04982|Vega:OTTHUMG00000015646 6 6q23.3 microtubule-associated protein 7 protein-coding MAP7 microtubule-associated protein 7 O MAP-7|dJ325F22.2 (microtubule-associated protein 7 (EMAP115, E-MAP-115))|ensconsin|epithelial microtubule-associated protein of 115 kDa 20121230 -9606 9054 NFS1 HUSSY-08 IscS|NIFS HGNC:15910|MIM:603485|Ensembl:ENSG00000244005|HPRD:04597|Vega:OTTHUMG00000032361 20 20q11.22 NFS1 nitrogen fixation 1 homolog (S. cerevisiae) protein-coding NFS1 NFS1 nitrogen fixation 1 homolog (S. cerevisiae) O cysteine desulfurase, mitochondrial|nitrogen fixation 1 (S. cerevisiae, homolog)|nitrogen-fixing bacteria S-like protein 20121230 -9606 9055 PRC1 - ASE1 HGNC:9341|MIM:603484|Ensembl:ENSG00000198901|HPRD:17899|Vega:OTTHUMG00000171685 15 15q26.1 protein regulator of cytokinesis 1 protein-coding PRC1 protein regulator of cytokinesis 1 O anaphase spindle elongation 1 homolog|protein regulating cytokinesis 1 20121230 -9606 9056 SLC7A7 - LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1 HGNC:11065|MIM:603593|Ensembl:ENSG00000155465|HPRD:04667|Vega:OTTHUMG00000028692 14 14q11.2 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 protein-coding SLC7A7 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 O Y+L amino acid transporter 1|monocyte amino acid permease 2|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7|y(+)L-type amino acid transporter 1 20121230 -9606 9057 SLC7A6 - LAT-2|LAT3|y+LAT-2 HGNC:11064|MIM:605641|Ensembl:ENSG00000103064|HPRD:12031|Vega:OTTHUMG00000176544 16 16q22.1 solute carrier family 7 (amino acid transporter light chain, y+L system), member 6 protein-coding SLC7A6 solute carrier family 7 (amino acid transporter light chain, y+L system), member 6 O Y+L amino acid transporter 2|amino acid permease|cationic amino acid transporter, y+ system|solute carrier family 7 (cationic amino acid transporter, y+ system), member 6|solute carrier family 7 member 6|y(+)L-type amino acid transporter 2|y+LAT2 20121230 -9606 9058 SLC13A2 - NADC1|NaCT|NaDC-1|SDCT1 HGNC:10917|MIM:604148|Ensembl:ENSG00000007216|HPRD:09164|Vega:OTTHUMG00000132523 17 17p13.2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 protein-coding SLC13A2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 O Na(+)-coupled citrate transporter|Na(+)/dicarboxylate cotransporter 1|renal sodium/dicarboxylate cotransporter|solute carrier family 13 member 2 20121230 -9606 9060 PAPSS2 RP11-77F13.2 ATPSK2|SK2 HGNC:8604|MIM:603005|Ensembl:ENSG00000198682|HPRD:04303|Vega:OTTHUMG00000018683 10 10q24 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 O 3-prime-phosphoadenosine 5-prime-phosphosulfate synthase 2|ATP sulfurylase/APS kinase 2|ATP sulfurylase/adenosine 5'-phosphosulfate kinase|PAPS synthase 2|PAPS synthetase 2|PAPSS 2|SK 2|bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2|bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2 20121230 -9606 9061 PAPSS1 - ATPSK1|PAPSS|SK1 HGNC:8603|MIM:603262|Ensembl:ENSG00000138801|HPRD:09132|Vega:OTTHUMG00000131210 4 4q24 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 O 3-prime-phosphoadenosine 5-prime-phosphosulfate synthase 1|PAPS synthase 1|PAPSS 1|SK 1|bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1|sulfurylase kinase 1 20121230 -9606 9063 PIAS2 - ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4 HGNC:17311|MIM:603567|Ensembl:ENSG00000078043|HPRD:06944|Vega:OTTHUMG00000179301 18 18q21.1 protein inhibitor of activated STAT, 2 protein-coding PIAS2 protein inhibitor of activated STAT, 2 O DAB2-interacting protein|E3 SUMO-protein ligase PIAS2|androgen receptor-interacting protein 3|msx-interacting zinc finger protein|protein inhibitor of activated STAT X|zinc finger, MIZ-type containing 4 20121230 -9606 9064 MAP3K6 RP11-4K3__A.7 ASK2|MAPKKK6|MEKK6 HGNC:6858|MIM:604468|Ensembl:ENSG00000142733|HPRD:05126|Vega:OTTHUMG00000004631 1 1p36.11 mitogen-activated protein kinase kinase kinase 6 protein-coding MAP3K6 mitogen-activated protein kinase kinase kinase 6 O apoptosis signal regulating kinase 2|apoptosis signal-regulating kinase 2 20121230 -9606 9066 SYT7 - IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII HGNC:11514|MIM:604146|Ensembl:ENSG00000011347|HPRD:11965|Vega:OTTHUMG00000168199 11 11q12-q13.1 synaptotagmin VII protein-coding SYT7 synaptotagmin VII O prostate cancer-associated protein 7|synaptotagmin-7 20121230 -9606 9068 ANGPTL1 PSEC0154 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 HGNC:489|MIM:603874|Ensembl:ENSG00000116194|HPRD:04851|Vega:OTTHUMG00000035075 1 1q25.2 angiopoietin-like 1 protein-coding ANGPTL1 angiopoietin-like 1 O ANG-3|angioarrestin|angiopoietin 3|angiopoietin Y1|angiopoietin-3|angiopoietin-like protein 1|angiopoietin-related protein 1|dJ595C2.2 (angiopoietin Y1) 20121230 -9606 9069 CLDN12 - - HGNC:2034|MIM:611232|Ensembl:ENSG00000157224|HPRD:13064|Vega:OTTHUMG00000156612 7 7q21 claudin 12 protein-coding CLDN12 claudin 12 O claudin-12 20121230 -9606 9070 ASH2L - ASH2|ASH2L1|ASH2L2|Bre2 HGNC:744|MIM:604782|Ensembl:ENSG00000129691|HPRD:05309|Vega:OTTHUMG00000164016 8 8p11.2 ash2 (absent, small, or homeotic)-like (Drosophila) protein-coding ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) O ASH2-like protein|set1/Ash2 histone methyltransferase complex subunit ASH2 20121230 -9606 9071 CLDN10 RP11-23E3.4 CPETRL3|OSP-L HGNC:2033|Ensembl:ENSG00000134873|HPRD:13063|Vega:OTTHUMG00000017217 13 13q31-q34 claudin 10 protein-coding CLDN10 claudin 10 O OSP-like protein|claudin-10 20121230 -9606 9073 CLDN8 UNQ779/PRO1573 - HGNC:2050|MIM:611231|Ensembl:ENSG00000156284|HPRD:10835|Vega:OTTHUMG00000081872 21 21q22.11 claudin 8 protein-coding CLDN8 claudin 8 O claudin-8 20121230 -9606 9074 CLDN6 UNQ757/PRO1488 - HGNC:2048|Ensembl:ENSG00000184697|HPRD:13070 16 16p13.3 claudin 6 protein-coding CLDN6 claudin 6 O claudin-6|skullin 20121230 -9606 9075 CLDN2 RP1-75H8.2 - HGNC:2041|MIM:300520|Ensembl:ENSG00000165376|HPRD:06471|Vega:OTTHUMG00000022154 X Xq22.3-q23 claudin 2 protein-coding CLDN2 claudin 2 O SP82|claudin-2 20121230 -9606 9076 CLDN1 UNQ481/PRO944 CLD1|ILVASC|SEMP1 HGNC:2032|MIM:603718|Ensembl:ENSG00000163347|HPRD:04760|Vega:OTTHUMG00000156214 3 3q28-q29 claudin 1 protein-coding CLDN1 claudin 1 O claudin-1|senescence-associated epithelial membrane protein 1 20121230 -9606 9077 DIRAS3 - ARHI|NOEY2 HGNC:687|MIM:605193|Ensembl:ENSG00000162595|HPRD:05547 1 1p31 DIRAS family, GTP-binding RAS-like 3 protein-coding DIRAS3 DIRAS family, GTP-binding RAS-like 3 O GTP-binding protein Di-Ras3|distinct subgroup of the Ras family member 3|ras homolog gene family, member I|rho-related GTP-binding protein RhoI 20121230 -9606 9079 LDB2 - CLIM1|LDB1 HGNC:6533|MIM:603450|Ensembl:ENSG00000169744|HPRD:16022|Vega:OTTHUMG00000048212 4 4p16 LIM domain binding 2 protein-coding LDB2 LIM domain binding 2 O CLIM-1|LDB-2|LIM binding domain 2|LIM domain-binding factor CLIM1|LIM domain-binding factor-2|LIM domain-binding protein 2|carboxyl-terminal LIM domain-binding protein 1 20121230 -9606 9080 CLDN9 - - HGNC:2051|Ensembl:ENSG00000213937|HPRD:13071|Vega:OTTHUMG00000129000 16 16p13.3 claudin 9 protein-coding CLDN9 claudin 9 O claudin-9 20121230 -9606 9081 PRY - PRY1|PTPN13LY HGNC:14024|MIM:400019|Ensembl:ENSG00000169789|HPRD:02460|Vega:OTTHUMG00000043845 Y Yq11.223 PTPN13-like, Y-linked protein-coding PRY PTPN13-like, Y-linked O PTPN13-like protein, Y-linked|testis-specific PTP-BL-related protein on Y 20121230 -9606 9082 XKRY - XKRY1 HGNC:18571|MIM:400015|HPRD:02456 Y Yq11.222 XK, Kell blood group complex subunit-related, Y-linked protein-coding XKRY XK, Kell blood group complex subunit-related, Y-linked O Testis-specific XK-related protein on Y|X Kell blood group precursor-related, Y-linked|testis-specific XK-related protein, Y-linked 2 20121230 -9606 9083 BPY2 - BPY2A|VCY2|VCY2A HGNC:13508|MIM:400013|Ensembl:ENSG00000183753|HPRD:02454|Vega:OTTHUMG00000058899 Y Yq11 basic charge, Y-linked, 2 protein-coding BPY2 basic charge, Y-linked, 2 O basic protein on Y chromosome 2|testis-specific basic protein Y 2|testis-specific basic protein on Y, 2|variable charge, Y-linked, 2|variably charged protein Y 2 20121230 -9606 9084 VCY - BPY1|VCY1|VCY1A HGNC:12668|MIM:400012|Ensembl:ENSG00000129864|HPRD:02453|Vega:OTTHUMG00000036401 Y Yq11.221 variable charge, Y-linked protein-coding VCY variable charge, Y-linked O basic charge, Y-linked 1|basic protein on Y chromosome, 1|testis-specific basic protein Y 1|testis-specific basic protein on Y, 1|variable charge, Y chromosome|variably charged protein Y 20121220 -9606 9085 CDY1 - CDY|CDY1A HGNC:1809|MIM:400016|Ensembl:ENSG00000172288|HPRD:02457|Vega:OTTHUMG00000045274 Y Yq11.23 chromodomain protein, Y-linked, 1 protein-coding CDY1 chromodomain protein, Y-linked, 1 O chromodomain protein, Y chromosome, 1|testis-specific chromodomain protein Y 1|testis-specific chromodomain protein on Y 20121220 -9606 9086 EIF1AY - - HGNC:3252|MIM:400014|Ensembl:ENSG00000198692|HPRD:02455|Vega:OTTHUMG00000036544 Y Yq11.223 eukaryotic translation initiation factor 1A, Y-linked protein-coding EIF1AY eukaryotic translation initiation factor 1A, Y-linked O eIF-1A Y isoform|eIF-4C|eukaryotic translation initiation factor 1A, Y chromosome|eukaryotic translation initiation factor 1A, Y-chromosomal|eukaryotic translation initiation factor 4C 20121230 -9606 9087 TMSB4Y - TB4Y HGNC:11882|MIM:400017|Ensembl:ENSG00000154620|HPRD:02458|Vega:OTTHUMG00000036366 Y Yq11.221 thymosin beta 4, Y-linked protein-coding TMSB4Y thymosin beta 4, Y-linked O thymosin beta-4, Y isoform|thymosin beta-4, Y-chromosomal|thymosin, beta 4, Y chromosome 20121230 -9606 9088 PKMYT1 - MYT1 HGNC:29650|MIM:602474|Ensembl:ENSG00000127564|HPRD:03920|Vega:OTTHUMG00000128975 16 16p13.3 protein kinase, membrane associated tyrosine/threonine 1 protein-coding PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 O membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase|myt1 kinase 20121230 -9606 9091 PIGQ - GPI1|c407A10.1 HGNC:14135|MIM:605754|Ensembl:ENSG00000007541|HPRD:09307|Vega:OTTHUMG00000168047 16 16p13.3 phosphatidylinositol glycan anchor biosynthesis, class Q protein-coding PIGQ phosphatidylinositol glycan anchor biosynthesis, class Q O N-acetylglucosaminyl transferase component Gpi1|N-acetylglucosamyl transferase component GPI1|PIG-Q|c407A10.1 (GPI1 (N-acetylglucosaminyl transferase component))|phosphatidylinositol N-acetylglucosaminyltransferase subunit Q|phosphatidylinositol glycan, class Q|phosphatidylinositol-glycan biosynthesis class Q protein 20121230 -9606 9092 SART1 - Ara1|HOMS1|SART1259|SNRNP110|Snu66 HGNC:10538|MIM:605941|Ensembl:ENSG00000175467|HPRD:10440|Vega:OTTHUMG00000166771 11 11q13.1 squamous cell carcinoma antigen recognized by T cells protein-coding SART1 squamous cell carcinoma antigen recognized by T cells O IgE autoantigen|SART-1|SART1(259) protein|SART1(800) protein|SNU66 homolog|U4/U6.U5 tri-snRNP-associated 110 kDa protein|U4/U6.U5 tri-snRNP-associated protein 1|hSART-1|hSnu66|small nuclear ribonucleoprotein 110kDa (U4/U6.U5)|squamous cell carcinoma antigen recognised by T cells|squamous cell carcinoma antigen recognized by T cells 1|squamous cell carcinoma antigen recognized by T-cells 1 20121230 -9606 9093 DNAJA3 - HCA57|TID1|hTID-1 HGNC:11808|MIM:608382|Ensembl:ENSG00000103423|HPRD:09758|Vega:OTTHUMG00000129470 16 16p13.3 DnaJ (Hsp40) homolog, subfamily A, member 3 protein-coding DNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 3 O dnaJ homolog subfamily A member 3, mitochondrial|dnaJ protein Tid-1|hepatocellular carcinoma-associated antigen 57|tumorous imaginal discs protein Tid56 homolog 20121230 -9606 9094 UNC119 - HRG4|POC7|POC7A HGNC:12565|MIM:604011|Ensembl:ENSG00000109103|HPRD:04927|Vega:OTTHUMG00000132606 17 17q11.2 unc-119 homolog (C. elegans) protein-coding UNC119 unc-119 homolog (C. elegans) O POC7 centriolar protein homolog A|protein unc-119 homolog A|retinal protein 4 20121230 -9606 9095 TBX19 RP4-747L4.2 TBS19|TPIT|dJ747L4.1 HGNC:11596|MIM:604614|Ensembl:ENSG00000143178|HPRD:05214|Vega:OTTHUMG00000034648 1 1q24.2 T-box 19 protein-coding TBX19 T-box 19 O T-box factor, pituitary|T-box protein 19|T-box transcription factor TBX19|TBS 19 20121230 -9606 9096 TBX18 - - HGNC:11595|MIM:604613|Ensembl:ENSG00000112837|Vega:OTTHUMG00000015129 6 6q14-q15 T-box 18 protein-coding TBX18 T-box 18 O T-box protein 18|T-box transcription factor TBX18 20121230 -9606 9097 USP14 - TGT HGNC:12612|MIM:607274|Ensembl:ENSG00000101557|HPRD:06279|Vega:OTTHUMG00000178040 18 18p11.32 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) protein-coding USP14 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) O deubiquitinating enzyme 14|tRNA-guanine transglycosylase, 60-kD subunit|ubiquitin carboxyl-terminal hydrolase 14|ubiquitin specific protease 14 (tRNA-guanine transglycosylase)|ubiquitin thioesterase 14|ubiquitin thiolesterase 14|ubiquitin-specific processing protease 14|ubiquitin-specific-processing protease 14 20121230 -9606 9098 USP6 - HRP1|TRE17|TRE2|Tre-2|USP6-short HGNC:12629|MIM:604334|Ensembl:ENSG00000129204|HPRD:06827|Vega:OTTHUMG00000099449 17 17p13 ubiquitin specific peptidase 6 (Tre-2 oncogene) protein-coding USP6 ubiquitin specific peptidase 6 (Tre-2 oncogene) O TBC1D3 and USP32 fusion|deubiquitinating enzyme 6|hyperpolymorphic gene 1|proto-oncogene TRE-2|tre-2 oncogene|ubiquitin carboxyl-terminal hydrolase 6|ubiquitin specific peptidase 6-|ubiquitin specific protease 6 (Tre-2 oncogene)|ubiquitin thioesterase 6|ubiquitin thiolesterase 6|ubiquitin-specific protease USP6|ubiquitin-specific-processing protease 6 20121230 -9606 9099 USP2 - UBP41|USP9 HGNC:12618|MIM:604725|Ensembl:ENSG00000036672|HPRD:05287|Vega:OTTHUMG00000166200 11 11q23.3 ubiquitin specific peptidase 2 protein-coding USP2 ubiquitin specific peptidase 2 O 41 kDa ubiquitin-specific protease|deubiquitinating enzyme 2|ubiquitin carboxyl-terminal hydrolase 2|ubiquitin specific protease 12|ubiquitin specific protease 9|ubiquitin thioesterase 2|ubiquitin-specific-processing protease 2 20121230 -9606 9100 USP10 - UBPO HGNC:12608|MIM:609818|Ensembl:ENSG00000103194|HPRD:07029|Vega:OTTHUMG00000176770 16 16q24.1 ubiquitin specific peptidase 10 protein-coding USP10 ubiquitin specific peptidase 10 O deubiquitinating enzyme 10|ubiquitin carboxyl-terminal hydrolase 10|ubiquitin specific protease 10|ubiquitin thioesterase 10|ubiquitin thiolesterase 10|ubiquitin-specific-processing protease 10 20121230 -9606 9101 USP8 - HumORF8|UBPY HGNC:12631|MIM:603158|Ensembl:ENSG00000138592|HPRD:04405|Vega:OTTHUMG00000131645 15 15q21.2 ubiquitin specific peptidase 8 protein-coding USP8 ubiquitin specific peptidase 8 O deubiquitinating enzyme 8|hUBPy|ubiquitin carboxyl-terminal hydrolase 8|ubiquitin isopeptidase Y|ubiquitin specific protease 8|ubiquitin thioesterase 8|ubiquitin thiolesterase 8|ubiquitin-specific-processing protease 8 20121230 -9606 9103 FCGR2C - CD32|CD32C|CDW32|FCG2|FCRIIC|IGFR2 HGNC:15626|MIM:612169|HPRD:13318 1 1q23.3 Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene) protein-coding FCGR2C Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene) O Fc gamma receptor IIC|IgG Fc receptor II-c|fc-gamma-RIIc|immunoglobulin G Fc receptor II-c|low affinity immunoglobulin gamma Fc region receptor II-c 20121230 -9606 9104 RGN CTD-2522E6.2 GNL|RC|SMP30 HGNC:9989|MIM:300212|Ensembl:ENSG00000130988|HPRD:02196|Vega:OTTHUMG00000021435 X Xp11.3 regucalcin (senescence marker protein-30) protein-coding RGN regucalcin (senescence marker protein-30) O SMP-30|gluconolactonase|regucalcin|senescence marker protein 30|senescence marker protein-30 20121230 -9606 9107 MTMR6 RP11-271M24.1 - HGNC:7453|MIM:603561|Ensembl:ENSG00000139505|HPRD:11946|Vega:OTTHUMG00000016606 13 13q12 myotubularin related protein 6 protein-coding MTMR6 myotubularin related protein 6 O myotubularin-related protein 6 20121230 -9606 9108 MTMR7 - - HGNC:7454|MIM:603562|Ensembl:ENSG00000003987|HPRD:16027|Vega:OTTHUMG00000163771 8 8p22 myotubularin related protein 7 protein-coding MTMR7 myotubularin related protein 7 O myotubularin-related protein 7 20121230 -9606 9110 MTMR4 - FYVE-DSP2|ZFYVE11 HGNC:7452|MIM:603559|Ensembl:ENSG00000108389|HPRD:11945|Vega:OTTHUMG00000179079 17 17q22-q23 myotubularin related protein 4 protein-coding MTMR4 myotubularin related protein 4 O FYVE domain-containing dual specificity protein phosphatase 2|myotubularin-related protein 4|zinc finger FYVE domain-containing protein 11|zinc finger, FYVE domain containing 11 20121230 -9606 9111 NMI - - HGNC:7854|MIM:603525|Ensembl:ENSG00000123609|HPRD:04632|Vega:OTTHUMG00000131867 2 2q23 N-myc (and STAT) interactor protein-coding NMI N-myc (and STAT) interactor O N-myc interactor|N-myc-interactor 20121230 -9606 9112 MTA1 - - HGNC:7410|MIM:603526|Ensembl:ENSG00000182979|HPRD:04633|Vega:OTTHUMG00000150362 14 14q32.3 metastasis associated 1 protein-coding MTA1 metastasis associated 1 O metastasis associated gene 1 protein|metastasis-associated protein MTA1 20121230 -9606 9113 LATS1 - WARTS|wts HGNC:6514|MIM:603473|Ensembl:ENSG00000131023|HPRD:09147|Vega:OTTHUMG00000016437 6 6q25.1 LATS, large tumor suppressor, homolog 1 (Drosophila) protein-coding LATS1 LATS, large tumor suppressor, homolog 1 (Drosophila) O LATS (large tumor suppressor, Drosophila) homolog 1|WARTS protein kinase|h-warts|large tumor suppressor homolog 1|serine/threonine-protein kinase LATS1 20121230 -9606 9114 ATP6V0D1 - ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD HGNC:13724|MIM:607028|Ensembl:ENSG00000159720|HPRD:06121|Vega:OTTHUMG00000137515 16 16q22.1 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 protein-coding ATP6V0D1 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 O 32 kDa accessory protein|ATPase, H+ transporting, lysosomal (vacuolar proton pump), member D|H(+)-transporting two-sector ATPase, subunit D|V-ATPase 40 KDa accessory protein|V-ATPase AC39 subunit|V-ATPase subunit d 1|V-ATPase, subunit D|V-type proton ATPase subunit d 1|vacuolar proton pump subunit d 1 20121230 -9606 9117 SEC22C UNQ459/PRO784 SEC22L3 HGNC:16828|MIM:604028|Ensembl:ENSG00000093183|HPRD:04938|Vega:OTTHUMG00000131797 3 3p22.1 SEC22 vesicle trafficking protein homolog C (S. cerevisiae) protein-coding SEC22C SEC22 vesicle trafficking protein homolog C (S. cerevisiae) O SEC22 vesicle trafficking protein-like 3|secretion deficient 22C|vesicle-trafficking protein SEC22c 20121230 -9606 9118 INA - NEF5|NF-66|TXBP-1 HGNC:6057|MIM:605338|Ensembl:ENSG00000148798|HPRD:05628|Vega:OTTHUMG00000018986 10 10q24.33 internexin neuronal intermediate filament protein, alpha protein-coding INA internexin neuronal intermediate filament protein, alpha O 66 kDa neurofilament protein|alpha-Inx|alpha-internexin|neurofilament 5 (66kD)|neurofilament-66, tax-binding protein 20121230 -9606 9119 KRT75 - K6HF|KB18|PFB HGNC:24431|MIM:609025|Ensembl:ENSG00000170454|HPRD:11057|Vega:OTTHUMG00000169592 12 12q13 keratin 75 protein-coding KRT75 keratin 75 O CK-75|K75|cytokeratin type II|cytokeratin-75|hK6hf|keratin, type II cytoskeletal 75|keratin-6 hair follicle|keratin-75|type II keratin-18|type II keratin-K6hf|type-II keratin Kb18 20121230 -9606 9120 SLC16A6 - MCT6|MCT7 HGNC:10927|MIM:603880|Ensembl:ENSG00000108932|HPRD:04857|Vega:OTTHUMG00000179812 17 17q24.2 solute carrier family 16, member 6 (monocarboxylic acid transporter 7) protein-coding SLC16A6 solute carrier family 16, member 6 (monocarboxylic acid transporter 7) O breast cancer protein BCY5|monocarboxylate transporter 6|monocarboxylate transporter 7 20121230 -9606 9121 SLC16A5 - MCT5|MCT6 HGNC:10926|MIM:603879|Ensembl:ENSG00000170190|HPRD:04856|Vega:OTTHUMG00000179277 17 17q25.1 solute carrier family 16, member 5 (monocarboxylic acid transporter 6) protein-coding SLC16A5 solute carrier family 16, member 5 (monocarboxylic acid transporter 6) O monocarboxylate transporter 5|monocarboxylate transporter 6|solute carrier family 16 (monocarboxylic acid transporters), member 5 20121230 -9606 9122 SLC16A4 RP5-1074L1.3 MCT4|MCT5 HGNC:10925|MIM:603878|Ensembl:ENSG00000168679|HPRD:04855|Vega:OTTHUMG00000011285 1 1p13.3 solute carrier family 16, member 4 (monocarboxylic acid transporter 5) protein-coding SLC16A4 solute carrier family 16, member 4 (monocarboxylic acid transporter 5) O MCT 4|MCT 5|monocarboxylate transporter 4|monocarboxylate transporter 5|solute carrier family 16 (monocarboxylic acid transporters), member 4|solute carrier family 16 member 4 20121230 -9606 9123 SLC16A3 - MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4 HGNC:10924|MIM:603877|Ensembl:ENSG00000141526|HPRD:04854|Vega:OTTHUMG00000178832 17 17q25 solute carrier family 16, member 3 (monocarboxylic acid transporter 4) protein-coding SLC16A3 solute carrier family 16, member 3 (monocarboxylic acid transporter 4) O monocarboxylate transporter 3|monocarboxylate transporter 4|solute carrier family 16 (monocarboxylic acid transporters), member 3 20121230 -9606 9124 PDLIM1 - CLIM1|CLP-36|CLP36|hCLIM1 HGNC:2067|MIM:605900|Ensembl:ENSG00000107438|HPRD:09326|Vega:OTTHUMG00000018810 10 10q23.1 PDZ and LIM domain 1 protein-coding PDLIM1 PDZ and LIM domain 1 O LIM domain protein CLP-36|PDZ and LIM domain protein 1|carboxyl terminal LIM domain protein 1|elfin 20121230 -9606 9125 RQCD1 - CNOT9|CT129|RCD-1|RCD1 HGNC:10445|MIM:612054|Ensembl:ENSG00000144580|HPRD:08828|Vega:OTTHUMG00000154750 2 2q35 RCD1 required for cell differentiation1 homolog (S. pombe) protein-coding RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) O CCR4-NOT transcription complex subunit 9|cancer/testis antigen 129|cell differentiation protein RCD1 homolog|protein involved in sexual development 20121230 -9606 9126 SMC3 - BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 HGNC:2468|MIM:606062|Ensembl:ENSG00000108055|HPRD:05829|Vega:OTTHUMG00000019042 10 10q25 structural maintenance of chromosomes 3 protein-coding SMC3 structural maintenance of chromosomes 3 O SMC protein 3|SMC-3|basement membrane-associated chondroitin proteoglycan|chondroitin sulfate proteoglycan 6 (bamacan)|chromosome-associated polypeptide|structural maintenance of chromosomes protein 3 20121230 -9606 9127 P2RX6 - P2RXL1|P2X6|P2XM HGNC:8538|MIM:608077|Ensembl:ENSG00000099957|HPRD:08490|Vega:OTTHUMG00000150689 22 22q11.21 purinergic receptor P2X, ligand-gated ion channel, 6 protein-coding P2RX6 purinergic receptor P2X, ligand-gated ion channel, 6 O ATP receptor|P2X purinoceptor 6|purinergic receptor P2X-like 1, orphan receptor|purinoceptor P2X6|purinoreceptor P2X6|skeletal muscle-expressed P2X 20121230 -9606 9128 PRPF4 RP11-110L1.4 HPRP4|HPRP4P|PRP4|Prp4p HGNC:17349|MIM:607795|Ensembl:ENSG00000136875|HPRD:08479|Vega:OTTHUMG00000020517 9 9q31-q33 PRP4 pre-mRNA processing factor 4 homolog (yeast) protein-coding PRPF4 PRP4 pre-mRNA processing factor 4 homolog (yeast) O PRP4 homolog|PRP4/STK/WD splicing factor|U4/U6 small nuclear ribonucleoprotein Prp4|U4/U6 snRNP 60 kDa protein|WD splicing factor Prp4 20121230 -9606 9129 PRPF3 - HPRP3|HPRP3P|PRP3|Prp3p|RP18 HGNC:17348|MIM:607301|Ensembl:ENSG00000117360|HPRD:07389|Vega:OTTHUMG00000012807 1 1q21.1 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) protein-coding PRPF3 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) O U4/U6 small nuclear ribonucleoprotein Prp3|U4/U6 snRNP 90 kDa protein|U4/U6-associated RNA splicing factor|pre-mRNA-splicing factor 3 20121230 -9606 9130 FAM50A XX-FW81657B9.2 9F|DXS9928E|HXC-26|HXC26|XAP5 HGNC:18786|MIM:300453|Ensembl:ENSG00000071859|HPRD:02349|Vega:OTTHUMG00000033292 X Xq28 family with sequence similarity 50, member A protein-coding FAM50A family with sequence similarity 50, member A O protein FAM50A|protein XAP-5 20121230 -9606 9131 AIFM1 RP3-438D16.2 AIF|COXPD6|PDCD8 HGNC:8768|MIM:300169|Ensembl:ENSG00000156709|HPRD:02161|Vega:OTTHUMG00000022392 X Xq26.1 apoptosis-inducing factor, mitochondrion-associated, 1 protein-coding AIFM1 apoptosis-inducing factor, mitochondrion-associated, 1 O apoptosis-inducing factor 1, mitochondrial|programmed cell death 8 (apoptosis-inducing factor)|striatal apoptosis-inducing factor 20121230 -9606 9132 KCNQ4 - DFNA2|DFNA2A|KV7.4 HGNC:6298|MIM:603537|Ensembl:ENSG00000117013|HPRD:04641|Vega:OTTHUMG00000007730 1 1p34 potassium voltage-gated channel, KQT-like subfamily, member 4 protein-coding KCNQ4 potassium voltage-gated channel, KQT-like subfamily, member 4 O potassium channel KQT-like 4|potassium channel subunit alpha KvLQT4|potassium voltage-gated channel subfamily KQT member 4 20121230 -9606 9133 CCNB2 - HsT17299 HGNC:1580|MIM:602755|Ensembl:ENSG00000157456|HPRD:04131|Vega:OTTHUMG00000132715 15 15q22.2 cyclin B2 protein-coding CCNB2 cyclin B2 O G2/mitotic-specific cyclin-B2 20121230 -9606 9134 CCNE2 - CYCE2 HGNC:1590|MIM:603775|Ensembl:ENSG00000175305|HPRD:04801|Vega:OTTHUMG00000164696 8 8q22.1 cyclin E2 protein-coding CCNE2 cyclin E2 O G1/S-specific cyclin-E2 20121230 -9606 9135 RABEP1 - RAB5EP|RABPT5 HGNC:17677|MIM:603616|Ensembl:ENSG00000029725|HPRD:04684|Vega:OTTHUMG00000177870 17 17p13.2 rabaptin, RAB GTPase binding effector protein 1 protein-coding RABEP1 rabaptin, RAB GTPase binding effector protein 1 O neurocrescin|rab GTPase-binding effector protein 1|rabaptin-4|rabaptin-5|rabaptin-5alpha|renal carcinoma antigen NY-REN-17 20121230 -9606 9136 RRP9 - RNU3IP2|U3-55K HGNC:16829|Ensembl:ENSG00000114767|HPRD:08827|Vega:OTTHUMG00000156930 3 3p21.2 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) protein-coding RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) O RNA, U3 small nucleolar interacting protein 2|RRP9 homolog|RRP9, small subunit (SSU) processome component, homolog|U3 small nucleolar RNA-interacting protein 2|U3 small nucleolar ribonucleoprotein-associated 55 kDa protein|U3 snoRNP-associated 55-kDa protein 20121230 -9606 9138 ARHGEF1 - GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5 HGNC:681|MIM:601855|Ensembl:ENSG00000076928|HPRD:03511 19 19q13.13 Rho guanine nucleotide exchange factor (GEF) 1 protein-coding ARHGEF1 Rho guanine nucleotide exchange factor (GEF) 1 O 115 kDa guanine nucleotide exchange factor|115-kD protein|Lsc homolog|p115RhoGEF|rho guanine nucleotide exchange factor 1 20121230 -9606 9139 CBFA2T2 RP5-1137F22.1 EHT|MTGR1|ZMYND3|p85 HGNC:1536|MIM:603672|Ensembl:ENSG00000078699|HPRD:04721|Vega:OTTHUMG00000032261 20 20q11 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 protein-coding CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 O ETO homolog on chromosome 20|ETO homologous on chromosome 20|MTG8-like protein|MTG8-related protein 1|myeloid translocation gene-related protein 1|myeloid translocation-related protein 1|protein CBFA2T2 20121230 -9606 9140 ATG12 - APG12|APG12L|FBR93|HAPG12 HGNC:588|MIM:609608|Ensembl:ENSG00000145782|HPRD:08496|Vega:OTTHUMG00000128889 5 5q21-q22 autophagy related 12 protein-coding ATG12 autophagy related 12 O ATG12 autophagy related 12 homolog|Apg12 (autophagy, yeast) homolog|autophagy-related protein 12|ubiquitin-like protein ATG12 20121230 -9606 9141 PDCD5 - TFAR19 HGNC:8764|MIM:604583|Ensembl:ENSG00000105185|HPRD:06843|Vega:OTTHUMG00000180224 19 19q13.11 programmed cell death 5 protein-coding PDCD5 programmed cell death 5 O TF-1 cell apoptosis-related protein 19|TF1 cell apoptosis-related gene 19|TFAR19 novel apoptosis-related|programmed cell death protein 5 20121230 -9606 9142 TMEM257 - CXorf1 HGNC:2562|MIM:300565|Ensembl:ENSG00000221870|HPRD:06477|Vega:OTTHUMG00000159605 X Xq27.3 transmembrane protein 257 protein-coding TMEM257 transmembrane protein 257 O uncharacterized protein CXorf1 20121230 -9606 9143 SYNGR3 - - HGNC:11501|MIM:603927|Ensembl:ENSG00000127561|HPRD:06801|Vega:OTTHUMG00000128711 16 16p13 synaptogyrin 3 protein-coding SYNGR3 synaptogyrin 3 O synaptogyrin-3 20121230 -9606 9144 SYNGR2 UNQ352/PRO615 - HGNC:11499|MIM:603926|Ensembl:ENSG00000108639|HPRD:04891|Vega:OTTHUMG00000177457 17 17q25.3 synaptogyrin 2 protein-coding SYNGR2 synaptogyrin 2 O cellugyrin|synaptogyrin-2 20121230 -9606 9145 SYNGR1 RP3-333H23.3 - HGNC:11498|MIM:603925|Ensembl:ENSG00000100321|HPRD:06800|Vega:OTTHUMG00000030978 22 22q13.1 synaptogyrin 1 protein-coding SYNGR1 synaptogyrin 1 O synaptogyrin-1 20121230 -9606 9146 HGS - HRS HGNC:4897|MIM:604375|Ensembl:ENSG00000185359|HPRD:05085|Vega:OTTHUMG00000178109 17 17q25 hepatocyte growth factor-regulated tyrosine kinase substrate protein-coding HGS hepatocyte growth factor-regulated tyrosine kinase substrate O human growth factor-regulated tyrosine kinase substrate|protein pp110 20121230 -9606 9147 NEMF - NY-CO-1|SDCCAG1 HGNC:10663|MIM:608378|Ensembl:ENSG00000165525|HPRD:08494|Vega:OTTHUMG00000170857 14 14q22 nuclear export mediator factor protein-coding NEMF nuclear export mediator factor O antigen NY-CO-1|nuclear export mediator factor NEMF|serologically defined colon cancer antigen 1 20121230 -9606 9148 NEURL - NEURL1|RNF67|bA416N2.1|neu|neu-1 HGNC:7761|MIM:603804|Ensembl:ENSG00000107954|HPRD:04815|Vega:OTTHUMG00000018995 10 10q25.1 neuralized homolog (Drosophila) protein-coding NEURL neuralized homolog (Drosophila) O RING finger protein 67|h-neuralized 1|neuralized-like protein 1A 20121230 -9606 9149 DYRK1B - MIRK HGNC:3092|MIM:604556|Ensembl:ENSG00000105204|HPRD:05188 19 19q13.2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B protein-coding DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B O dual specificity tyrosine-phosphorylation-regulated kinase 1B|minibrain-related kinase|mirk protein kinase 20121230 -9606 9150 CTDP1 - CCFDN|FCP1 HGNC:2498|MIM:604927|Ensembl:ENSG00000060069|HPRD:05377|Vega:OTTHUMG00000132920 18 18q23 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 O CTD of POLR2A, phosphatase of, subunit 1|RNA polymerase II subunit A C-terminal domain phosphatase|TFIIF-associating CTD phosphatase 1|serine phosphatase FCP1a|transcription factor IIF-associating CTD phosphatase 1 20121230 -9606 9151 HHC3 - FBH3|FBHOk HGNC:4900|MIM:600740 19 19q13 hypocalciuric hypercalcemia 3 (Oklahoma type) unknown HHC3 hypocalciuric hypercalcemia 3 (Oklahoma type) O - 20120622 -9606 9152 SLC6A5 - GLYT-2|GLYT2|HKPX3|NET1 HGNC:11051|MIM:604159|Ensembl:ENSG00000165970|HPRD:08378|Vega:OTTHUMG00000166024 11 11p15.1 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein-coding SLC6A5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 O sodium- and chloride-dependent glycine transporter 2 20121230 -9606 9153 SLC28A2 - CNT2|HCNT2|HsT17153|SPNT1 HGNC:11002|MIM:606208|Ensembl:ENSG00000137860|HPRD:07069|Vega:OTTHUMG00000131426 15 15q15 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 protein-coding SLC28A2 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 O CNT 2|Na(+)/nucleoside cotransporter 2|SPNT|concentrative nucleoside transporter 2|sodium-coupled nucleoside transporter 2|sodium/nucleoside cotransporter 2|sodium/purine nucleoside co-transporter|solute carrier family 28 member 2 20121230 -9606 9154 SLC28A1 - CNT1|HCNT1 HGNC:11001|MIM:606207|Ensembl:ENSG00000156222|HPRD:07068|Vega:OTTHUMG00000148668 15 15q25.3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 protein-coding SLC28A1 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 O CNT 1|Na(+)/nucleoside cotransporter 1|concentrative nucleoside transporter 1|sodium-coupled nucleoside transporter 1|sodium/nucleoside cotransporter 1|solute carrier family 28 member 1 20121230 -9606 9156 EXO1 RP11-553N16.2 HEX1|hExoI HGNC:3511|MIM:606063|Ensembl:ENSG00000174371|HPRD:06932|Vega:OTTHUMG00000039965 1 1q42-q43 exonuclease 1 protein-coding EXO1 exonuclease 1 O hExo1|rad2 nuclease family member, homolog of S. cerevisiae exonuclease 1 20121230 -9606 9158 FIBP - FGFIBP|FIBP-1 HGNC:3705|MIM:608296|Ensembl:ENSG00000172500|HPRD:08492|Vega:OTTHUMG00000166846 11 11q13.1 fibroblast growth factor (acidic) intracellular binding protein protein-coding FIBP fibroblast growth factor (acidic) intracellular binding protein O FGF-1 intracellular-binding protein|aFGF intracellular-binding protein|acidic fibroblast growth factor intracellular-binding protein 20121230 -9606 9159 PCSK7 - LPC|PC7|PC8|SPC7 HGNC:8748|MIM:604872|Ensembl:ENSG00000160613|HPRD:05339|Vega:OTTHUMG00000165640 11 11q23-q24 proprotein convertase subtilisin/kexin type 7 protein-coding PCSK7 proprotein convertase subtilisin/kexin type 7 O hPC8|lymphoma proprotein convertase|prohormone convertase 7|prohormone convertase PC7|proprotein convertase 7|proprotein convertase 8|proprotein convertase PC7|subtilisin/kexin-like protease PC7 20121230 -9606 9162 DGKI - DGK-IOTA HGNC:2855|MIM:604072|Ensembl:ENSG00000157680|HPRD:07238|Vega:OTTHUMG00000155697 7 7q32.3-q33 diacylglycerol kinase, iota protein-coding DGKI diacylglycerol kinase, iota O DAG kinase iota|diacylglycerol kinase iota|diglyceride kinase iota 20121230 -9606 9163 AMLCR2 - AMLCR HGNC:466|MIM:602439 16 16q22 acute myeloid leukemia chromosome region 2 other AMLCR2 acute myeloid leukemia chromosome region 2 O - 20121220 -9606 9166 EBAG9 - EB9|PDAF|RCAS1 HGNC:3123|MIM:605772|Ensembl:ENSG00000147654|HPRD:05775|Vega:OTTHUMG00000165346 8 8q23 estrogen receptor binding site associated, antigen, 9 protein-coding EBAG9 estrogen receptor binding site associated, antigen, 9 O cancer associated surface antigen|cancer-associated surface antigen RCAS1|estrogen receptor-binding fragment-associated gene 9 protein|receptor-binding cancer antigen expressed on SiSo cells 20121230 -9606 9167 COX7A2L - COX7AR|COX7RP|EB1|SIG81 HGNC:2289|MIM:605771|Ensembl:ENSG00000115944|HPRD:05774|Vega:OTTHUMG00000128605 2 2p21 cytochrome c oxidase subunit VIIa polypeptide 2 like protein-coding COX7A2L cytochrome c oxidase subunit VIIa polypeptide 2 like O COX7a-related protein|cytochrome c oxidase subunit 7A-related protein, mitochondrial|cytochrome c oxidase subunit VII-related protein|cytochrome c oxidase subunit VIIa-related protein|estrogen receptor binding CpG island 20121230 -9606 9168 TMSB10 - MIG12|TB10 HGNC:11879|MIM:188399|Ensembl:ENSG00000034510|HPRD:01779|Vega:OTTHUMG00000130027 2 2p11.2 thymosin beta 10 protein-coding TMSB10 thymosin beta 10 O migration-inducing gene 12|migration-inducing protein 12|thymosin beta-10 20121230 -9606 9169 SCAF11 - CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP HGNC:10784|MIM:603668|Ensembl:ENSG00000139218|HPRD:04720|Vega:OTTHUMG00000149930 12 12q12 SR-related CTD-associated factor 11 protein-coding SCAF11 SR-related CTD-associated factor 11 O CTD-associated SR protein 11|SC35-interacting protein 1|SFRS2-interacting protein|SR-related and CTD-associated factor 11|SRSF2-interacting protein|protein SCAF11|renal carcinoma antigen NY-REN-40|serine/arginine-rich splicing factor 2, interacting protein|serine/arginine-rich splicing factor 2-interacting protein|splicing factor, arginine/serine-rich 2, interacting protein|splicing factor, arginine/serine-rich 2-interacting protein|splicing regulatory protein 129 20121230 -9606 9170 LPAR2 - EDG-4|EDG4|LPA-2|LPA2 HGNC:3168|MIM:605110|Ensembl:ENSG00000064547|Vega:OTTHUMG00000182328 19 19p12 lysophosphatidic acid receptor 2 protein-coding LPAR2 lysophosphatidic acid receptor 2 O G protein-coupled receptor|LPA receptor 2|LPA receptor EDG4|endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 4|lysophosphatidic acid receptor EDG4|lysophosphatidic acid receptor Edg-4 20121230 -9606 9172 MYOM2 - TTNAP HGNC:7614|MIM:603509|Ensembl:ENSG00000036448|HPRD:04619|Vega:OTTHUMG00000129175 8 8p23.3 myomesin 2 protein-coding MYOM2 myomesin 2 O 165 kDa connectin-associated protein|165 kDa titin-associated protein|M-band protein|M-protein|myomesin (M-protein) 2, 165kDa|myomesin family member 2|myomesin-2|titin-associated protein, 165 kD 20121230 -9606 9173 IL1RL1 - DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 HGNC:5998|MIM:601203|Ensembl:ENSG00000115602|HPRD:03123|Vega:OTTHUMG00000130782 2 2q12 interleukin 1 receptor-like 1 protein-coding IL1RL1 interleukin 1 receptor-like 1 O growth stimulation-expressed|homolog of mouse growth stimulation-expressed|interleukin 1 receptor-related protein|interleukin-1 receptor-like 1 20121230 -9606 9175 MAP3K13 - LZK|MEKK13|MLK HGNC:6852|MIM:604915|Ensembl:ENSG00000073803|HPRD:05372|Vega:OTTHUMG00000156673 3 3q27 mitogen-activated protein kinase kinase kinase 13 protein-coding MAP3K13 mitogen-activated protein kinase kinase kinase 13 O leucine zipper-bearing kinase|mixed lineage kinase 20121230 -9606 9177 HTR3B - 5-HT3B HGNC:5298|MIM:604654|Ensembl:ENSG00000149305|HPRD:06875|Vega:OTTHUMG00000168210 11 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B, ionotropic protein-coding HTR3B 5-hydroxytryptamine (serotonin) receptor 3B, ionotropic O 5-HT3-B|5-hydroxytryptamine 3 receptor B subunit|5-hydroxytryptamine receptor 3B|serotonin-gated ion channel subunit 20121230 -9606 9179 AP4M1 - CPSQ3|MU-4|MU-ARP2|SPG50 HGNC:574|MIM:602296|Ensembl:ENSG00000221838|HPRD:03803|Vega:OTTHUMG00000154722 7 7q22.1 adaptor-related protein complex 4, mu 1 subunit protein-coding AP4M1 adaptor-related protein complex 4, mu 1 subunit O AP-4 complex subunit mu-1|adapter-related protein complex 4 mu-1 subunit|adaptor-related protein complex AP-4 mu4 subunit|mu subunit of AP-4|mu-adaptin-related protein 2|mu-adaptin-related protein-2|mu4|mu4-adaptin 20121230 -9606 9180 OSMR - OSMRB|PLCA1 HGNC:8507|MIM:601743|Ensembl:ENSG00000145623|HPRD:03446|Vega:OTTHUMG00000090811 5 5p13.1 oncostatin M receptor protein-coding OSMR oncostatin M receptor O IL-31 receptor subunit beta|IL-31R subunit beta|IL-31R-beta|IL-31RB|interleukin-31 receptor subunit beta|oncostatin-M specific receptor beta subunit|oncostatin-M-specific receptor subunit beta 20121230 -9606 9181 ARHGEF2 RP11-336K24.3 GEF|GEF-H1|GEFH1|LFP40|P40 HGNC:682|MIM:607560|Ensembl:ENSG00000116584|HPRD:10458|Vega:OTTHUMG00000017464 1 1q21-q22 Rho/Rac guanine nucleotide exchange factor (GEF) 2 protein-coding ARHGEF2 Rho/Rac guanine nucleotide exchange factor (GEF) 2 O Rho/Rac guanine nucleotide exchange factor 2|guanine nucleotide exchange factor H1|microtubule-regulated Rho-GEF|proliferating cell nucleolar antigen p40|rho guanine nucleotide exchange factor 2 20121230 -9606 9182 RASSF9 - P-CIP1|PAMCI|PCIP1 HGNC:15739|MIM:610383|Ensembl:ENSG00000198774|HPRD:08826|Vega:OTTHUMG00000169831 12 12q21.31 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 protein-coding RASSF9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 O PAM COOH-terminal interactor protein 1|peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor protein-1|ras association domain-containing protein 9 20121230 -9606 9183 ZW10 - HZW10|KNTC1AP HGNC:13194|MIM:603954|Ensembl:ENSG00000086827|HPRD:04902|Vega:OTTHUMG00000168190 11 11q23.2 zw10 kinetochore protein protein-coding ZW10 zw10 kinetochore protein O ZW10 homolog, centromere/kinetochore protein|ZW10, kinetochore associated, homolog|centromere/kinetochore protein zw10 homolog|zeste white 10 homolog 20121230 -9606 9184 BUB3 - BUB3L|hBUB3 HGNC:1151|MIM:603719|Ensembl:ENSG00000154473|HPRD:04761|Vega:OTTHUMG00000019197 10 10q26 budding uninhibited by benzimidazoles 3 homolog (yeast) protein-coding BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) O BUB3 budding uninhibited by benzimidazoles 3 homolog|budding uninhibited by benomyl|mitotic checkpoint component|mitotic checkpoint protein BUB3 20121230 -9606 9185 REPS2 RP11-2K15.3 POB1 HGNC:9963|MIM:300317|Ensembl:ENSG00000169891|HPRD:02262|Vega:OTTHUMG00000021199 X Xp22.2 RALBP1 associated Eps domain containing 2 protein-coding REPS2 RALBP1 associated Eps domain containing 2 O RALBP1-interacting protein 2|partner of Ral-binding protein 1|partner of RalBP1|ralBP1-associated Eps domain-containing protein 2 20121230 -9606 9186 LGMD1D - - HGNC:6576|MIM:603511 7 7q limb girdle muscular dystrophy 1D (autosomal dominant) unknown LGMD1D limb girdle muscular dystrophy 1D (autosomal dominant) O - 20120622 -9606 9187 SLC24A1 - CSNB1D|HsT17412|NCKX|NCKX1|RODX HGNC:10975|MIM:603617|Ensembl:ENSG00000074621|HPRD:04685|Vega:OTTHUMG00000167960 15 15q22 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 protein-coding SLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 O Na(+)/K(+)/Ca(2+)-exchange protein 1|retinal rod Na+/Ca+/K+ exchanger|sodium/potassium/calcium exchanger 1 20121230 -9606 9188 DDX21 - GUA|GURDB|RH-II/GU|RH-II/GuA HGNC:2744|MIM:606357|Ensembl:ENSG00000165732|HPRD:05895|Vega:OTTHUMG00000018366 10 10q21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 protein-coding DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 O DEAD (Asp-Glu-Ala-Asp) box polypeptide 21|DEAD box protein 21|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21|Gu protein|RH II/Gu|RNA helicase II/Gu alpha|gu-alpha|nucleolar RNA helicase 2|nucleolar RNA helicase Gu|nucleolar RNA helicase II 20121230 -9606 9189 ZBED1 - ALTE|DREF|TRAMP|hDREF HGNC:447|MIM:300178|Ensembl:ENSG00000214717|HPRD:02170|Vega:OTTHUMG00000021069 X|Y Xp22.33;Yp11 zinc finger, BED-type containing 1 protein-coding ZBED1 zinc finger, BED-type containing 1 O Ac-like transposable element|BED-type zinc finger domain-containing protein 1|DNA replication-related element binding factor|dREF homolog|zinc finger BED domain-containing protein 1 20121230 -9606 9191 DEDD KE05 CASP8IP1|DEDD1|DEFT|FLDED1 HGNC:2755|MIM:606841|Ensembl:ENSG00000158796|HPRD:06022|Vega:OTTHUMG00000033104 1 1q23.3 death effector domain containing protein-coding DEDD death effector domain containing O DEDPro1|FLDED-1|death effector domain-containing protein|death effector domain-containing testicular molecule 20121230 -9606 9193 SPG9 - - HGNC:11239|MIM:601162 10 10q23.3-q24.2 spastic paraplegia 9 (autosomal dominant) unknown SPG9 spastic paraplegia 9 (autosomal dominant) O - 20120622 -9606 9194 SLC16A7 - MCT2 HGNC:10928|MIM:603654|Ensembl:ENSG00000118596|HPRD:06791|Vega:OTTHUMG00000169923 12 12q13 solute carrier family 16, member 7 (monocarboxylic acid transporter 2) protein-coding SLC16A7 solute carrier family 16, member 7 (monocarboxylic acid transporter 2) O monocarboxylate transporter 2 20121230 -9606 9196 KCNAB3 - AKR6A9|KCNA3.1B|KCNA3B|KV-BETA-3 HGNC:6230|MIM:604111|Ensembl:ENSG00000170049|HPRD:04983|Vega:OTTHUMG00000108170 17 17p13.1 potassium voltage-gated channel, shaker-related subfamily, beta member 3 protein-coding KCNAB3 potassium voltage-gated channel, shaker-related subfamily, beta member 3 O K(+) channel subunit beta-3|potassium channel, voltage-dependent, beta-3 subunit|voltage-gated potassium channel subunit beta-3 20121230 -9606 9197 SLC33A1 - ACATN|AT-1|AT1|CCHLND|SPG42 HGNC:95|MIM:603690|Ensembl:ENSG00000169359|HPRD:04734|Vega:OTTHUMG00000158481 3 3q25.31 solute carrier family 33 (acetyl-CoA transporter), member 1 protein-coding SLC33A1 solute carrier family 33 (acetyl-CoA transporter), member 1 O acetyl-coenzyme A transporter 1 20121230 -9606 9198 PTPLC - - HGNC:9641 - - protein tyrosine phosphatase-like (proline instead of catalytic arginine), member c protein-coding PTPLC protein tyrosine phosphatase-like (proline instead of catalytic arginine), member c O - 20080828 -9606 9200 PTPLA - CAP|HACD1 HGNC:9639|MIM:610467|Ensembl:ENSG00000165996|HPRD:10175|Vega:OTTHUMG00000017750 10 10p14-p13 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A protein-coding PTPLA protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A O 3-hydroxyacyl-CoA dehydratase 1|cementum attachment protein|protein-tyrosine phosphatase-like member A|very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 20121230 -9606 9201 DCLK1 RP11-113P14.1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK HGNC:2700|MIM:604742|Ensembl:ENSG00000133083|HPRD:09202|Vega:OTTHUMG00000016729 13 13q13 doublecortin-like kinase 1 protein-coding DCLK1 doublecortin-like kinase 1 O doublecortin and CaM kinase-like 1|doublecortin domain-containing protein 3A|doublecortin-like and CAM kinase-like 1|serine/threonine-protein kinase DCLK1 20121230 -9606 9202 ZMYM4 RP11-181E22.3 CDIR|MYM|ZNF198L3|ZNF262 HGNC:13055|MIM:613568|Ensembl:ENSG00000146463|HPRD:10326|Vega:OTTHUMG00000004241 1 1p32-p34 zinc finger, MYM-type 4 protein-coding ZMYM4 zinc finger, MYM-type 4 O cell death inhibiting RNA|zinc finger MYM-type protein 4|zinc finger protein 262 20121230 -9606 9203 ZMYM3 - DXS6673E|MYM|XFIM|ZNF198L2|ZNF261 HGNC:13054|MIM:300061|Ensembl:ENSG00000147130|HPRD:02088|Vega:OTTHUMG00000021799 X Xq13.1 zinc finger, MYM-type 3 protein-coding ZMYM3 zinc finger, MYM-type 3 O zinc finger MYM-type protein 3|zinc finger protein 261 20121230 -9606 9204 ZMYM6 RP11-244H3.3 Buster2|MYM|ZNF198L4|ZNF258 HGNC:13050|MIM:613567|Ensembl:ENSG00000163867|HPRD:10325|HPRD:17494|Vega:OTTHUMG00000004163 1 1p34.2 zinc finger, MYM-type 6 protein-coding ZMYM6 zinc finger, MYM-type 6 O zinc finger MYM-type protein 6|zinc finger protein 258|zinc finger, MYM-type containing 6 20121230 -9606 9205 ZMYM5 RP11-523H24.6 HSPC050|MYM|ZNF198L1|ZNF237 HGNC:13029|Ensembl:ENSG00000132950|Vega:OTTHUMG00000016504 13 13q12 zinc finger, MYM-type 5 protein-coding ZMYM5 zinc finger, MYM-type 5 O zinc finger MYM-type protein 5|zinc finger protein 198-like 1|zinc finger protein 237 20121230 -9606 9206 RAD17P2 - HRAD17P2 HGNC:9809 13 13q14.2 RAD17 homolog (S. pombe) pseudogene 2 pseudo RAD17P2 RAD17 homolog (S. pombe) pseudogene 2 O - 20121230 -9606 9207 RAD17P1 - HRAD17P1 HGNC:9808 7 7p21 RAD17 homolog (S. pombe) pseudogene 1 pseudo RAD17P1 RAD17 homolog (S. pombe) pseudogene 1 O - 20121230 -9606 9208 LRRFIP1 - FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP HGNC:6702|MIM:603256|Ensembl:ENSG00000124831|HPRD:04460|Vega:OTTHUMG00000133339 2 2q37.3 leucine rich repeat (in FLII) interacting protein 1 protein-coding LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 O GC-binding factor 2|LRR FLII-interacting protein 1|NEDD8-conjugating enzyme|TAR RNA-interacting protein|leucine-rich repeat flightless-interacting protein 1 20121230 -9606 9209 LRRFIP2 - HUFI-2 HGNC:6703|MIM:614043|Ensembl:ENSG00000093167|HPRD:10061|Vega:OTTHUMG00000130796 3 3p22.2 leucine rich repeat (in FLII) interacting protein 2 protein-coding LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 O LRR FLII-interacting protein 2|leucine-rich repeat flightless-interacting protein 2 20121230 -9606 9210 BMP15 - GDF9B|ODG2|POF4 HGNC:1068|MIM:300247|Ensembl:ENSG00000130385|HPRD:02216|Vega:OTTHUMG00000021525 X Xp11.2 bone morphogenetic protein 15 protein-coding BMP15 bone morphogenetic protein 15 O BMP-15|GDF-9B|growth/differentiation factor 9B 20121230 -9606 9211 LGI1 UNQ775/PRO1569 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 HGNC:6572|MIM:604619|Ensembl:ENSG00000108231|HPRD:05216|Vega:OTTHUMG00000018777 10 10q24 leucine-rich, glioma inactivated 1 protein-coding LGI1 leucine-rich, glioma inactivated 1 O epitempin-1|leucine-rich glioma-inactivated protein 1 20121230 -9606 9212 AURKB - AIK2|AIM-1|AIM1|ARK2|AurB|IPL1|PPP1R48|STK12|STK5|aurkb-sv1|aurkb-sv2 HGNC:11390|MIM:604970|Ensembl:ENSG00000178999|HPRD:05397|Vega:OTTHUMG00000108189 17 17p13.1 aurora kinase B protein-coding AURKB aurora kinase B O ARK-2|STK-1|aurora 1|aurora kinase B-Sv1|aurora kinase B-Sv2|aurora- and Ipl1-like midbody-associated protein 1|aurora-1|aurora-B|aurora-related kinase 2|aurora/IPL1-related kinase 2|protein phosphatase 1, regulatory subunit 48|serine/threonine kinase 12|serine/threonine-protein kinase 12|serine/threonine-protein kinase 5|serine/threonine-protein kinase aurora-B 20121230 -9606 9213 XPR1 RP11-46A10.1 SYG1|X3 HGNC:12827|MIM:605237|Ensembl:ENSG00000143324|HPRD:05574|Vega:OTTHUMG00000035116 1 1q25.1 xenotropic and polytropic retrovirus receptor 1 protein-coding XPR1 xenotropic and polytropic retrovirus receptor 1 O X-receptor|protein SYG1 homolog|xenotropic and polytropic murine leukemia virus receptor X3 20121230 -9606 9214 FAIM3 - FCMR|TOSO HGNC:14315|MIM:606015|Ensembl:ENSG00000162894|HPRD:09349|Vega:OTTHUMG00000036457 1 1q32.1 Fas apoptotic inhibitory molecule 3 protein-coding FAIM3 Fas apoptotic inhibitory molecule 3 O Fc mu receptor|IgM Fc receptor|fas apoptotic inhibitory molecule 3|immunoglobulin mu Fc receptor|regulator of Fas-induced apoptosis Toso 20121230 -9606 9215 LARGE CTA-282F2.1 MDC1D|MDDGA6|MDDGB6 HGNC:6511|MIM:603590|Ensembl:ENSG00000133424|HPRD:04665|Vega:OTTHUMG00000150914 22 22q12.3 like-glycosyltransferase protein-coding LARGE like-glycosyltransferase O acetylglucosaminyltransferase-like 1A|acetylglucosaminyltransferase-like protein|glycosyltransferase-like protein LARGE1|like-acetylglucosaminyltransferase 20121230 -9606 9217 VAPB RP5-1018E9.1 ALS8|VAMP-B|VAP-B HGNC:12649|MIM:605704|Ensembl:ENSG00000124164|HPRD:09300|Vega:OTTHUMG00000032840 20 20q13.33 VAMP (vesicle-associated membrane protein)-associated protein B and C protein-coding VAPB VAMP (vesicle-associated membrane protein)-associated protein B and C O VAMP-associated 33 kDa protein|vesicle-associated membrane protein-associated protein B/C 20121230 -9606 9218 VAPA - VAP-33|VAP-A|VAP33|hVAP-33 HGNC:12648|MIM:605703|Ensembl:ENSG00000101558|HPRD:09299|Vega:OTTHUMG00000131603 18 18p11.22 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa O 33 kDa VAMP-associated protein|VAMP-A|VAMP-associated protein A|vesicle-associated membrane protein-associated protein A 20121230 -9606 9219 MTA2 - MTA1L1|PID HGNC:7411|MIM:603947|Ensembl:ENSG00000149480|HPRD:07233|Vega:OTTHUMG00000167684 11 11q12-q13.1 metastasis associated 1 family, member 2 protein-coding MTA2 metastasis associated 1 family, member 2 O MTA1-L1 protein|metastasis -associated gene 1-like 1|metastasis associated gene family, member 2|metastasis-associated 1-like 1|metastasis-associated protein 2|metastasis-associated protein MTA2|p53 target protein in deacetylase complex 20121230 -9606 9220 TIAF1 - MAJN|SPR210 HGNC:11803|MIM:609517|Ensembl:ENSG00000221995|HPRD:10268|Vega:OTTHUMG00000163268 17 17q11.2 TGFB1-induced anti-apoptotic factor 1 protein-coding TIAF1 TGFB1-induced anti-apoptotic factor 1 O 12 kDa TGF-beta-1-induced antiapoptotic factor|TGF-beta-1-induced antiapoptotic factor 1|molecule associated with Jak-3 N-terminal 20121230 -9606 9221 NOLC1 - NOPP130|NOPP140|NS5ATP13|P130 HGNC:15608|MIM:602394|Ensembl:ENSG00000166197|Vega:OTTHUMG00000018944 10 10q24.32 nucleolar and coiled-body phosphoprotein 1 protein-coding NOLC1 nucleolar and coiled-body phosphoprotein 1 O 140 kDa nucleolar phosphoprotein|HCV NS5A trans-regulated protein 13|HCV NS5A-transactivated protein 13|hepatitis C virus NS5A-transactivated protein 13|nucleolar 130 kDa protein|nucleolar and coiled-body phosphprotein 1|nucleolar phosphoprotein p130|nucleolar protein p130 20121230 -9606 9223 MAGI1 - AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|TNRC19|WWP3 HGNC:946|MIM:602625|Ensembl:ENSG00000151276|HPRD:04020|Vega:OTTHUMG00000157554 3 3p14.1 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 O BAI1-associated protein 1|WW domain-containing protein 3|atrophin-1-interacting protein 3|membrane-associated guanylate kinase inverted 1|membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1|trinucleotide repeat-containing gene 19 protein 20121230 -9606 9227 LRAT - LCA14 HGNC:6685|MIM:604863|Ensembl:ENSG00000121207|HPRD:05332|Vega:OTTHUMG00000161418 4 4q32.1 lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) protein-coding LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) O lecithin retinol acyltransferase 20121230 -9606 9228 DLGAP2 - DAP2|SAPAP2 HGNC:2906|MIM:605438|Ensembl:ENSG00000198010|HPRD:09258|Vega:OTTHUMG00000163599 8 8p23 discs, large (Drosophila) homolog-associated protein 2 protein-coding DLGAP2 discs, large (Drosophila) homolog-associated protein 2 O PSD-95/SAP90-binding protein 2|SAP90/PSD-95-associated protein 2|disks large-associated protein 2 20121230 -9606 9229 DLGAP1 - DAP-1|DAP-1-ALPHA|DAP-1-BETA|GKAP|SAPAP1|hGKAP HGNC:2905|MIM:605445|Ensembl:ENSG00000170579|HPRD:09260|Vega:OTTHUMG00000131537 18 18p11.31 discs, large (Drosophila) homolog-associated protein 1 protein-coding DLGAP1 discs, large (Drosophila) homolog-associated protein 1 O PSD-95/SAP90 binding protein 1|SAP90/PSD-95-associated protein 1|disks large-associated protein 1|guanylate kinase-associated protein 20121230 -9606 9230 RAB11B - H-YPT3 HGNC:9761|MIM:604198|Ensembl:ENSG00000185236|HPRD:05009 19 19p13.2 RAB11B, member RAS oncogene family protein-coding RAB11B RAB11B, member RAS oncogene family O GTP-binding protein YPT3|RAB11B, member of RAS oncogene family|ras-related protein Rab-11B 20121230 -9606 9231 DLG5 RP13-39P12.4 LP-DLG|P-DLG5|PDLG HGNC:2904|MIM:604090|Ensembl:ENSG00000151208|HPRD:04972|Vega:OTTHUMG00000018548 10 10q23 discs, large homolog 5 (Drosophila) protein-coding DLG5 discs, large homolog 5 (Drosophila) O discs large protein LP-DLG|discs large protein P-dlg|disks large homolog 5|large type of P-DLG|placenta and prostate DLG 20121230 -9606 9232 PTTG1 - EAP1|HPTTG|PTTG|TUTR1 HGNC:9690|MIM:604147|Ensembl:ENSG00000164611|HPRD:04998|Vega:OTTHUMG00000130328 5 5q35.1 pituitary tumor-transforming 1 protein-coding PTTG1 pituitary tumor-transforming 1 O ESP1-associated protein 1|pituitary tumor-transforming gene 1 protein|securin|tumor-transforming protein 1 20121230 -9606 9235 IL32 - IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd HGNC:16830|MIM:606001|Ensembl:ENSG00000008517|HPRD:09346|Vega:OTTHUMG00000167498 16 16p13.3 interleukin 32 protein-coding IL32 interleukin 32 O interleukin-32|interleukin-32 eta|interleukin-32 small|interleukin-32 theta|natural killer cell transcript 4|natural killer cells protein 4|tumor necrosis factor alpha-inducing factor 20121230 -9606 9236 CCPG1 - CPR8 HGNC:24227|MIM:611326|Ensembl:ENSG00000260916|HPRD:09895|Vega:OTTHUMG00000172678 15 15q21.1 cell cycle progression 1 protein-coding CCPG1 cell cycle progression 1 O cell cycle progression protein 1|cell cycle progression restoration protein 8 20121230 -9606 9238 TBRG4 - CPR2|FASTKD4 HGNC:17443|MIM:611325|Ensembl:ENSG00000136270|HPRD:10263|Vega:OTTHUMG00000129247 7 7p13 transforming growth factor beta regulator 4 protein-coding TBRG4 transforming growth factor beta regulator 4 O FAST kinase domain-containing protein 4|FAST kinase domains 4|H_TD2522F11.8|cell cycle progression protein 2|cell cycle progression restoration protein 2|protein TBRG4 20121230 -9606 9240 PNMA1 - MA1 HGNC:9158|MIM:604010|Ensembl:ENSG00000176903|HPRD:04926|Vega:OTTHUMG00000169183 14 14q24.3 paraneoplastic Ma antigen 1 protein-coding PNMA1 paraneoplastic Ma antigen 1 O 37 kDa neuronal protein|neuron- and testis-specific protein 1|paraneoplastic antigen Ma1|paraneoplastic neuronal antigen MA1 20121230 -9606 9241 NOG - SYM1|SYNS1 HGNC:7866|MIM:602991|Ensembl:ENSG00000183691|HPRD:04291|Vega:OTTHUMG00000151770 17 17q22 noggin protein-coding NOG noggin O symphalangism 1 (proximal) 20121230 -9606 9242 MSC - ABF-1|ABF1|MYOR|bHLHa22 HGNC:7321|MIM:603628|Ensembl:ENSG00000178860|HPRD:04694|Vega:OTTHUMG00000164489 8 8q21 musculin protein-coding MSC musculin O activated B-cell factor 1, homolog of mouse musculin|activated B-cell factor-1|class A basic helix-loop-helix protein 22 20121230 -9606 9244 CRLF1 UNQ288/PRO327 CISS|CISS1|CLF|CLF-1|NR6|zcytor5 HGNC:2364|MIM:604237|Ensembl:ENSG00000006016|HPRD:09177 19 19p12 cytokine receptor-like factor 1 protein-coding CRLF1 cytokine receptor-like factor 1 O class I cytokine receptor|cytokine type 1 receptor CRLP-1|cytokine-like factor 1 20121230 -9606 9245 GCNT3 - C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM HGNC:4205|MIM:606836|Ensembl:ENSG00000140297|HPRD:06018|Vega:OTTHUMG00000132726 15 15q21.3 glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type O C2GnT-mucin type|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3|beta1,6-N-acetylglucosaminyltransferase-M|beta1,6GlcNAc-transferase|core 2/core 4 beta-1,6-N-acetylglucosaminyltransferase|hC2GnT-M|mucus-type core 2 beta-1,6-N-acetylglucosaminyltransferase 20121230 -9606 9246 UBE2L6 - RIG-B|UBCH8 HGNC:12490|MIM:603890|Ensembl:ENSG00000156587|HPRD:04867|Vega:OTTHUMG00000167047 11 11q12 ubiquitin-conjugating enzyme E2L 6 protein-coding UBE2L6 ubiquitin-conjugating enzyme E2L 6 O retinoic acid induced gene B protein|retinoic acid-induced gene B protein|ubiquitin carrier protein L6|ubiquitin-protein ligase L6|ubiquitin/ISG15-conjugating enzyme E2 L6 20121230 -9606 9247 GCM2 RP3-417M14.3 GCMB|hGCMb HGNC:4198|MIM:603716|Ensembl:ENSG00000124827|HPRD:04758|Vega:OTTHUMG00000014249 6 6p23 glial cells missing homolog 2 (Drosophila) protein-coding GCM2 glial cells missing homolog 2 (Drosophila) O GCM motif protein 2|chorion-specific transcription factor GCMb|glial cells missing 2|glial cells missing homolog b|glide/gcm protein homolog 20121230 -9606 9248 GPR50 - H9|Mel1c HGNC:4506|MIM:300207|Ensembl:ENSG00000102195|HPRD:02194|Vega:OTTHUMG00000024166 X Xq28 G protein-coupled receptor 50 protein-coding GPR50 G protein-coupled receptor 50 O melatonin-related receptor 20121230 -9606 9249 DHRS3 RP11-514N2.1 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 HGNC:17693|MIM:612830|Ensembl:ENSG00000162496|HPRD:09915|Vega:OTTHUMG00000001885 1 1p36.1 dehydrogenase/reductase (SDR family) member 3 protein-coding DHRS3 dehydrogenase/reductase (SDR family) member 3 O retinal short-chain dehydrogenase/reductase 1|short chain dehydrogenase/reductase family 16C, member 1|short-chain dehydrogenase/reductase 1|short-chain dehydrogenase/reductase 3 20121230 -9606 9252 RPS6KA5 - MSK1|MSPK1|RLPK HGNC:10434|MIM:603607|Ensembl:ENSG00000100784|HPRD:06789|Vega:OTTHUMG00000171055 14 14q31-q32.1 ribosomal protein S6 kinase, 90kDa, polypeptide 5 protein-coding RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 O 90 kDa ribosomal protein S6 kinase 5|RSK-like protein kinase|RSKL|S6K-alpha-5|nuclear mitogen- and stress-activated protein kinase 1|ribosomal protein S6 kinase alpha-5 20121230 -9606 9253 NUMBL - CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 HGNC:8061|MIM:604018|Ensembl:ENSG00000105245|HPRD:04931 19 19q13.13-q13.2 numb homolog (Drosophila)-like protein-coding NUMBL numb homolog (Drosophila)-like O numb homolog-like|numb-like protein|numb-related protein 20121230 -9606 9254 CACNA2D2 - CACNA2D|LUAC11.1 HGNC:1400|MIM:607082|Ensembl:ENSG00000007402|HPRD:06154|Vega:OTTHUMG00000156887 3 3p21.3 calcium channel, voltage-dependent, alpha 2/delta subunit 2 protein-coding CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 O alpha 2 delta calcium channel subunit|gene 26|voltage-dependent calcium channel subunit alpha-2/delta-2|voltage-gated calcium channel subunit alpha-2/delta-2 20121230 -9606 9255 AIMP1 - EMAP2|EMAPII|HLD3|SCYE1|p43 HGNC:10648|MIM:603605|Ensembl:ENSG00000164022|HPRD:04676|Vega:OTTHUMG00000131217 4 4q24 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 protein-coding AIMP1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 O ARS-interacting multifunctional protein 1|aminoacyl tRNA synthase complex-interacting multifunctional protein 1|endothelial monocyte-activating polypeptide 2|endothelial-monocyte activating polypeptide II|multisynthase complex auxiliary component p43|multisynthetase complex auxiliary component p43|small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating) 20121230 -9606 9256 BZRAP1 - PBR-IP|PRAX-1|PRAX1|RIM-BP1|RIMBP1 HGNC:16831|MIM:610764|Ensembl:ENSG00000005379|HPRD:09832|Vega:OTTHUMG00000178923 17 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 protein-coding BZRAP1 benzodiazapine receptor (peripheral) associated protein 1 O RIMS-binding protein 1|peripheral benzodiazepine receptor-interacting protein|peripheral-type benzodiazepine receptor-associated protein 1 20121230 -9606 9258 MFHAS1 - LRRC65|MASL1 HGNC:16982|MIM:605352|Ensembl:ENSG00000147324|HPRD:12010|Vega:OTTHUMG00000163676 8 8p23.1 malignant fibrous histiocytoma amplified sequence 1 protein-coding MFHAS1 malignant fibrous histiocytoma amplified sequence 1 O MFH-amplified sequences with leucine-rich tandem repeats 1|leucine rich repeat containing 65|malignant fibrous histiocytoma-amplified sequence 1|malignant fibrous histiocytoma-amplified sequence with leucine-rich tandem repeats 1 20121230 -9606 9260 PDLIM7 - LMP1|LMP3 HGNC:22958|MIM:605903|Ensembl:ENSG00000196923|HPRD:10436|Vega:OTTHUMG00000130853 5 5q35.3 PDZ and LIM domain 7 (enigma) protein-coding PDLIM7 PDZ and LIM domain 7 (enigma) O 1110003B01Rik|LIM domain protein|LMP|Lim mineralization protein 3|PDZ and LIM domain protein 7|protein enigma 20121230 -9606 9261 MAPKAPK2 - MAPKAP-K2|MK-2|MK2 HGNC:6887|MIM:602006|Ensembl:ENSG00000162889|HPRD:11882|Vega:OTTHUMG00000036342 1 1q32 mitogen-activated protein kinase-activated protein kinase 2 protein-coding MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 O MAP kinase-activated protein kinase 2|MAPK-activated protein kinase 2|MAPKAP kinase 2 20121230 -9606 9262 STK17B - DRAK2 HGNC:11396|MIM:604727|Ensembl:ENSG00000081320|HPRD:05289|Vega:OTTHUMG00000132735 2 2q32.3 serine/threonine kinase 17b protein-coding STK17B serine/threonine kinase 17b O DAP kinase-related apoptosis-inducing protein kinase 2|death-associated protein kinase-related 2|serine/threonine-protein kinase 17B 20121230 -9606 9263 STK17A - DRAK1 HGNC:11395|MIM:604726|Ensembl:ENSG00000164543|HPRD:05288|Vega:OTTHUMG00000022825 7 7p13 serine/threonine kinase 17a protein-coding STK17A serine/threonine kinase 17a O DAP kinase-related apoptosis-inducing protein kinase 1|death-associated protein kinase-related 1|serine/threonine kinase 17a (apoptosis-inducing)|serine/threonine-protein kinase 17A 20121230 -9606 9265 CYTH3 tcag7.847 ARNO3|GRP1|PSCD3 HGNC:9504|MIM:605081|Ensembl:ENSG00000008256|HPRD:05469|Vega:OTTHUMG00000023440 7 7p22.1 cytohesin 3 protein-coding CYTH3 cytohesin 3 O ARF nucleotide-binding site opener 3|PH, SEC7 and coiled-coil domain-containing protein 3|cytohesin-3|general receptor of phosphoinositides 1|pleckstrin homology, Sec7 and coiled-coil domains 3 20121230 -9606 9266 CYTH2 - ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like HGNC:9502|MIM:602488|Ensembl:ENSG00000105443|HPRD:03925|Vega:OTTHUMG00000150245 19 19q13.33 cytohesin 2 protein-coding CYTH2 cytohesin 2 O ARF exchange factor|ARF nucleotide-binding site opener|PH, SEC7 and coiled-coil domain-containing protein 2|cytohesin-2|pleckstrin homology, Sec7 and coiled-coil domains 2 (cytohesin-2)|pleckstrin homology, Sec7 and coiled/coil domains 2 (cytohesin-2) 20121230 -9606 9267 CYTH1 - B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 HGNC:9501|MIM:182115|Ensembl:ENSG00000108669|HPRD:01630|Vega:OTTHUMG00000150253 17 17q25 cytohesin 1 protein-coding CYTH1 cytohesin 1 O PH, SEC7 and coiled-coil domain-containing protein 1|SEC7 homolog B2-1|cytoadhesin 1|cytohesin-1|homolog of secretory protein SEC7|pleckstrin homology, Sec7 and coiled-coil domains 1 20121230 -9606 9270 ITGB1BP1 - ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B HGNC:23927|MIM:607153|Ensembl:ENSG00000119185|HPRD:06194|Vega:OTTHUMG00000090414 2 2p25.2 integrin beta 1 binding protein 1 protein-coding ITGB1BP1 integrin beta 1 binding protein 1 O ICAP-1|bodenin|integrin beta-1-binding protein 1|integrin cytoplasmic domain-associated protein 1|integrin cytoplasmic domain-associated protein 1-alpha|integrin cytoplasmic domain-associated protein 1-beta 20121230 -9606 9271 PIWIL1 - HIWI|MIWI|PIWI HGNC:9007|MIM:605571|Ensembl:ENSG00000125207|HPRD:10409|Vega:OTTHUMG00000168382 12 12q24.33 piwi-like 1 (Drosophila) protein-coding PIWIL1 piwi-like 1 (Drosophila) O piwi homolog|piwi-like protein 1 20121230 -9606 9274 BCL7C - - HGNC:1006|MIM:605847|Ensembl:ENSG00000099385|HPRD:05787|Vega:OTTHUMG00000177719 16 16p11 B-cell CLL/lymphoma 7C protein-coding BCL7C B-cell CLL/lymphoma 7C O B-cell CLL/lymphoma 7 protein family member C 20121230 -9606 9275 BCL7B - - HGNC:1005|MIM:605846|Ensembl:ENSG00000106635|HPRD:05786|Vega:OTTHUMG00000023412 7 7q11.23 B-cell CLL/lymphoma 7B protein-coding BCL7B B-cell CLL/lymphoma 7B O B-cell CLL/lymphoma 7 protein family member B 20121230 -9606 9276 COPB2 - beta'-COP HGNC:2232|MIM:606990|Ensembl:ENSG00000184432|HPRD:06103|Vega:OTTHUMG00000159959 3 3q23 coatomer protein complex, subunit beta 2 (beta prime) protein-coding COPB2 coatomer protein complex, subunit beta 2 (beta prime) O beta'-coat protein|betaprime-COP|coatomer binding complex, beta prime subunit|coatomer subunit beta'|p102 20121230 -9606 9277 WDR46 DADB-159G18.3 BING4|C6orf11|FP221|UTP7 HGNC:13923|MIM:611440|Ensembl:ENSG00000227057|HPRD:12839|Vega:OTTHUMG00000031192 6 6p21.3 WD repeat domain 46 protein-coding WDR46 WD repeat domain 46 O WD repeat-containing protein 46|WD repeat-containing protein BING4 20121230 -9606 9278 ZBTB22 DADB-159G18.8 BING1|ZBTB22A|ZNF297|ZNF297A|fru|fruitless HGNC:13085|MIM:611439|Ensembl:ENSG00000236104|HPRD:15761|Vega:OTTHUMG00000031110 6 6p21.3 zinc finger and BTB domain containing 22 protein-coding ZBTB22 zinc finger and BTB domain containing 22 O zinc finger and BTB domain-containing protein 22|zinc finger and BTB domain-containing protein 22A|zinc finger protein 297 20121230 -9606 9282 MED14 - CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170 HGNC:2370|MIM:300182|Ensembl:ENSG00000180182|HPRD:02172|Vega:OTTHUMG00000024107 X Xp11.4 mediator complex subunit 14 protein-coding MED14 mediator complex subunit 14 O ARC150|CRSP complex subunit 2|RGR1 homolog|activator-recruited cofactor 150 kDa component|cofactor required for Sp1 transcriptional activation, subunit 2 (150kD)|hRGR1|human homolog of yeast RGR1|mediator of RNA polymerase II transcription subunit 14|thyroid hormone receptor-associated protein complex 170 kDa component|thyroid hormone receptor-associated protein complex component TRAP170|transcriptional co-activator CRSP150|vitamin D receptor-interacting protein complex component DRIP150|vitamin D3 receptor-interacting protein complex 150 kDa component 20121230 -9606 9283 GPR37L1 - ET(B)R-LP-2|ETBR-LP-2 HGNC:14923|Ensembl:ENSG00000170075|HPRD:13603|Vega:OTTHUMG00000035924 1 1q32.1 G protein-coupled receptor 37 like 1 protein-coding GPR37L1 G protein-coupled receptor 37 like 1 O G-protein coupled receptor 37 like 1|G-protein coupled receptor 37-like 1|endothelin B receptor-like protein 2|endothelin type b receptor-like protein 2 20121230 -9606 9284 NPIP - morpheus HGNC:7909|MIM:606406|Ensembl:ENSG00000183426|HPRD:12101|Vega:OTTHUMG00000090663 16 16p13.11 nuclear pore complex interacting protein protein-coding NPIP nuclear pore complex interacting protein O nuclear pore complex-interacting protein 20121230 -9606 9287 TAAR2 - GPR58 HGNC:4514|MIM:604849|Ensembl:ENSG00000146378|HPRD:06887|Vega:OTTHUMG00000015585 6 6q24 trace amine associated receptor 2 protein-coding TAAR2 trace amine associated receptor 2 O G protein-coupled receptor 58|G-protein coupled receptor 58|taR-2|trace amine receptor 2|trace amine-associated receptor 2 20121230 -9606 9288 TAAR3 - GPR57|GPR58|TAAR2 HGNC:4513 6 6q23-q24 trace amine associated receptor 3 (gene/pseudogene) pseudo TAAR3 trace amine associated receptor 3 (gene/pseudogene) O - 20121230 -9606 9289 GPR56 UNQ540/PRO1083 BFPP|TM7LN4|TM7XN1 HGNC:4512|MIM:604110|Ensembl:ENSG00000205336|HPRD:06824|Vega:OTTHUMG00000176742 16 16q13 G protein-coupled receptor 56 protein-coding GPR56 G protein-coupled receptor 56 O 7-transmembrane protein with no EGF-like N-terminal domains-1|G-protein coupled receptor 56 20121230 -9606 9290 GPR55 - - HGNC:4511|MIM:604107|Ensembl:ENSG00000135898|HPRD:07248|Vega:OTTHUMG00000133224 2 2q37 G protein-coupled receptor 55 protein-coding GPR55 G protein-coupled receptor 55 O G-protein coupled receptor 55 20121230 -9606 9292 GPR53P - PsiGPR53|dJ271M21.8 HGNC:4509 6 6p21 G protein-coupled receptor 53, pseudogene pseudo GPR53P G protein-coupled receptor 53, pseudogene O - 20121230 -9606 9293 GPR52 - - HGNC:4508|MIM:604106|Ensembl:ENSG00000203737|HPRD:07247|Vega:OTTHUMG00000034901 1 1q24 G protein-coupled receptor 52 protein-coding GPR52 G protein-coupled receptor 52 O probable G-protein coupled receptor 52 20121230 -9606 9294 S1PR2 - AGR16|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2 HGNC:3169|MIM:605111|Ensembl:ENSG00000267534|HPRD:05488|Vega:OTTHUMG00000180399 19 19p13.2 sphingosine-1-phosphate receptor 2 protein-coding S1PR2 sphingosine-1-phosphate receptor 2 O S1P receptor 2|S1P receptor EDG5|S1P receptor Edg-5|endothelial differentiation G-protein coupled receptor 5|endothelial differentiation, sphingolipid G-protein-coupled receptor, 5|sphingosine 1-phosphate receptor 2|sphingosine 1-phosphate receptor Edg-5 20121230 -9606 9295 SRSF11 RP4-677H15.3 NET2|SFRS11|dJ677H15.2|p54 HGNC:10782|MIM:602010|Ensembl:ENSG00000116754|HPRD:03599|Vega:OTTHUMG00000009342 1 1p31 serine/arginine-rich splicing factor 11 protein-coding SRSF11 serine/arginine-rich splicing factor 11 O SR splicing factor 11|arginine-rich 54 kDa nuclear protein|splicing factor p54|splicing factor, arginine/serine-rich 11 20121230 -9606 9296 ATP6V1F - ATP6S14|VATF|Vma7 HGNC:16832|MIM:607160|Ensembl:ENSG00000128524|HPRD:06198|Vega:OTTHUMG00000158365 7 7q32 ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F protein-coding ATP6V1F ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F O ATPase, vacuolar, 14 kD|H(+)-transporting two-sector ATPase, 14kD subunit|V-ATPase 14 kDa subunit|V-ATPase F subunit|V-ATPase subunit F|V-type proton ATPase subunit F|adenosinetriphosphatase 14k chain|vacuolar ATP synthase subunit F|vacuolar proton pump F subunit|vacuolar proton pump subunit F 20121230 -9606 9297 SNORD29 - RNU29|U29 HGNC:10151|MIM:603228 11 11q13 small nucleolar RNA, C/D box 29 snoRNA SNORD29 small nucleolar RNA, C/D box 29 O - 20121230 -9606 9298 SNORD31 - RNU31|U31 HGNC:10158|MIM:603230 11 11q13 small nucleolar RNA, C/D box 31 snoRNA SNORD31 small nucleolar RNA, C/D box 31 O - 20121230 -9606 9299 SNORD30 - RNU30|U30 HGNC:10157|MIM:603229 11 11q13 small nucleolar RNA, C/D box 30 snoRNA SNORD30 small nucleolar RNA, C/D box 30 O - 20121230 -9606 9300 SNORD28 - RNU28|U28 HGNC:10150|MIM:603227 11 11q13 small nucleolar RNA, C/D box 28 snoRNA SNORD28 small nucleolar RNA, C/D box 28 O - 20121230 -9606 9301 SNORD27 - RNU27|U27 HGNC:10149|MIM:603226 11 11q13 small nucleolar RNA, C/D box 27 snoRNA SNORD27 small nucleolar RNA, C/D box 27 O - 20121230 -9606 9302 SNORD26 - RNU26|U26 HGNC:10148|MIM:603225 11 11q13 small nucleolar RNA, C/D box 26 snoRNA SNORD26 small nucleolar RNA, C/D box 26 O - 20121230 -9606 9303 SNORD25 - RNU25|U25 HGNC:10147|MIM:603224 11 11q13 small nucleolar RNA, C/D box 25 snoRNA SNORD25 small nucleolar RNA, C/D box 25 O - 20121230 -9606 9304 SNORD22 - RNU22|U22 HGNC:10145|MIM:603223 11 11q13 small nucleolar RNA, C/D box 22 snoRNA SNORD22 small nucleolar RNA, C/D box 22 O - 20121230 -9606 9306 SOCS6 - CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 HGNC:16833|MIM:605118|Ensembl:ENSG00000170677|HPRD:05491|Vega:OTTHUMG00000132816 18 18q22.2 suppressor of cytokine signaling 6 protein-coding SOCS6 suppressor of cytokine signaling 6 O STAT induced STAT inhibitor-4|cytokine-inducible SH2 protein 4|suppressor of cytokine signaling 4 20121230 -9606 9308 CD83 - BL11|HB15 HGNC:1703|MIM:604534|Ensembl:ENSG00000112149|HPRD:05170|Vega:OTTHUMG00000014283 6 6p23 CD83 molecule protein-coding CD83 CD83 molecule O B-cell activation protein|CD83 antigen|CD83 antigen (activated B lymphocytes, immunoglobulin superfamily)|cell surface protein HB15|cell-surface glycoprotein|hCD83 20121230 -9606 9310 ZNF235 - ANF270|HZF6|ZFP93|ZNF270 HGNC:12866|MIM:604749|Ensembl:ENSG00000159917|HPRD:05299|Vega:OTTHUMG00000182353 19 19q13.2 zinc finger protein 235 protein-coding ZNF235 zinc finger protein 235 O zfp-93|zinc finger protein 270|zinc finger protein 6|zinc finger protein 93 homolog|zinc finger protein HZF6|zinc finger protein homologous to Zfp93 in mouse|zinc finger protein homologous to mouse Zfp93 20121230 -9606 9311 ASIC3 - ACCN3|DRASIC|SLNAC1|TNaC1 HGNC:101|MIM:611741|Ensembl:ENSG00000213199|HPRD:10626|Vega:OTTHUMG00000158685 7 7q35 acid-sensing (proton-gated) ion channel 3 protein-coding ASIC3 acid-sensing (proton-gated) ion channel 3 O acid-sensing ion channel 3|amiloride-sensitive cation channel 3, testis|modulatory subunit of ASIC2a|neuronal amiloride-sensitive cation channel 3|proton-gated cation channel subunit|testis sodium channel 1 20121230 -9606 9312 KCNB2 - KV2.2 HGNC:6232|MIM:607738|Ensembl:ENSG00000182674|HPRD:09666|Vega:OTTHUMG00000164498 8 8q13.2 potassium voltage-gated channel, Shab-related subfamily, member 2 protein-coding KCNB2 potassium voltage-gated channel, Shab-related subfamily, member 2 O delayed rectifier potassium channel protein|potassium channel Kv2.2|potassium voltage-gated channel subfamily B member 2|voltage-gated potassium channel subunit Kv2.2 20121230 -9606 9313 MMP20 - AI2A2|MMP-20 HGNC:7167|MIM:604629|Ensembl:ENSG00000137674|HPRD:05218|Vega:OTTHUMG00000168081 11 11q22.3 matrix metallopeptidase 20 protein-coding MMP20 matrix metallopeptidase 20 O enamel metalloproteinase|matrix metalloproteinase 20 (enamelysin)|matrix metalloproteinase-20 20121230 -9606 9314 KLF4 RP11-150J11.1 EZF|GKLF HGNC:6348|MIM:602253|Ensembl:ENSG00000136826|Vega:OTTHUMG00000020449 9 9q31 Kruppel-like factor 4 (gut) protein-coding KLF4 Kruppel-like factor 4 (gut) O Krueppel-like factor 4|endothelial Kruppel-like zinc finger protein|epithelial zinc finger protein EZF|gut-enriched krueppel-like factor 20121230 -9606 9315 NREP - C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 HGNC:16834|MIM:607332|Ensembl:ENSG00000134986|HPRD:09545|Vega:OTTHUMG00000128795 5 5q22.1 neuronal regeneration related protein protein-coding NREP neuronal regeneration related protein O neuronal protein 3.1|neuronal regeneration related protein homolog|neuronal regeneration-related protein|protein p311 20121230 -9606 9317 PTER - HPHRP|RPR-1 HGNC:9590|MIM:604446|Ensembl:ENSG00000165983|HPRD:16061|Vega:OTTHUMG00000017737 10 10p12 phosphotriesterase related protein-coding PTER phosphotriesterase related O parathion hydrolase-related protein|phosphotriesterase-related protein|resiniferatoxin-binding, phosphotriesterase-related 20121230 -9606 9318 COPS2 - ALIEN|CSN2|SGN2|TRIP15 HGNC:30747|MIM:604508|Ensembl:ENSG00000166200|HPRD:05146|Vega:OTTHUMG00000172324 15 15q21.2 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) protein-coding COPS2 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) O COP9 signalosome complex subunit 2|JAB1-containing signalosome subunit 2|TR-interacting protein 15|TRIP-15|alien homolog|signalosome subunit 2|thyroid receptor interacting protein 15|thyroid receptor-interacting protein 15 20121230 -9606 9319 TRIP13 - 16E1BP HGNC:12307|MIM:604507|Ensembl:ENSG00000071539|HPRD:05145|Vega:OTTHUMG00000090349 5 5p15.33 thyroid hormone receptor interactor 13 protein-coding TRIP13 thyroid hormone receptor interactor 13 O 16E1-BP|HPV16 E1 protein binding protein|HPV16 E1 protein-binding protein|TR-interacting protein 13|TRIP-13|human papillomavirus type 16 E1 protein-binding protein|pachytene checkpoint protein 2 homolog|thyroid receptor interacting protein 13|thyroid receptor-interacting protein 13 20121230 -9606 9320 TRIP12 - ULF HGNC:12306|MIM:604506|Ensembl:ENSG00000153827|HPRD:05144|Vega:OTTHUMG00000153623 2 2q36.3 thyroid hormone receptor interactor 12 protein-coding TRIP12 thyroid hormone receptor interactor 12 O E3 ubiquitin-protein ligase TRIP12|E3 ubiquitin-protein ligase for Arf|TR-interacting protein 12|TRIP-12|probable E3 ubiquitin-protein ligase TRIP12|thyroid receptor interacting protein 12|thyroid receptor-interacting protein 12 20121230 -9606 9321 TRIP11 - ACG1A|CEV14|GMAP-210|TRIP-11|TRIP230 HGNC:12305|MIM:604505|Ensembl:ENSG00000100815|HPRD:05143|Vega:OTTHUMG00000171128 14 14q31-q32 thyroid hormone receptor interactor 11 protein-coding TRIP11 thyroid hormone receptor interactor 11 O Golgi-microtubule-associated protein of 210 kDa|TR-interacting protein 11|clonal evolution-related gene on chromosome 14 protein|golgi-associated microtubule-binding protein 210|thyroid receptor-interacting protein 11 20121230 -9606 9322 TRIP10 - CIP4|HSTP|STOT|STP HGNC:12304|MIM:604504|Ensembl:ENSG00000125733|HPRD:05142 19 19p13.3 thyroid hormone receptor interactor 10 protein-coding TRIP10 thyroid hormone receptor interactor 10 O TR-interacting protein 10|TRIP-10|cdc42-interacting protein 4|protein Felic|salt tolerant protein|salt tolerator|thyroid receptor interacting protein 10|thyroid receptor-interacting protein 10 20121230 -9606 9324 HMGN3 PNAS-24 PNAS-25|TRIP7 HGNC:12312|MIM:604502|Ensembl:ENSG00000118418|HPRD:16062|Vega:OTTHUMG00000015073 6 6q14.1 high mobility group nucleosomal binding domain 3 protein-coding HMGN3 high mobility group nucleosomal binding domain 3 O TR-interacting protein 7|high mobility group nucleosome-binding domain-containing protein 3|thyroid hormone receptor interacting protein 7 20121230 -9606 9325 TRIP4 - ASC-1|ASC1|HsT17391 HGNC:12310|MIM:604501|Ensembl:ENSG00000103671|HPRD:05140|Vega:OTTHUMG00000133033 15 15q22.31 thyroid hormone receptor interactor 4 protein-coding TRIP4 thyroid hormone receptor interactor 4 O TR-interacting protein 4|TRIP-4|activating signal cointegrator 1|thyroid receptor interacting protein 4|thyroid receptor-interacting protein 4 20121230 -9606 9326 ZNHIT3 - TRIP3 HGNC:12309|MIM:604500|Ensembl:ENSG00000108278|HPRD:05139|Vega:OTTHUMG00000133065 17 17q12 zinc finger, HIT-type containing 3 protein-coding ZNHIT3 zinc finger, HIT-type containing 3 O HNF-4a coactivator|TR-interacting protein 3|TRIP-3|thyroid hormone receptor interactor 3|thyroid receptor interacting protein 3|thyroid receptor-interacting protein 3|zinc finger HIT domain-containing protein 3|zinc finger, HIT domain containing 3|zinc finger, HIT type 3 20121230 -9606 9328 GTF3C5 RP11-326L24.5 TFIIIC63|TFIIICepsilon|TFiiiC2-63 HGNC:4668|MIM:604890|Ensembl:ENSG00000148308|HPRD:16077|Vega:OTTHUMG00000020856 9 9q34 general transcription factor IIIC, polypeptide 5, 63kDa protein-coding GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa O TF3C-epsilon|TFIIIC 63 kDa subunit|general transcription factor 3C polypeptide 5|transcription factor IIIC 63 kDa subunit|transcription factor IIIC subunit epsilon|transcription factor IIIC, 63 kD 20121230 -9606 9329 GTF3C4 - KAT12|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA HGNC:4667|MIM:604892|Ensembl:ENSG00000125484|HPRD:11998|Vega:OTTHUMG00000020842 9 9q34.13 general transcription factor IIIC, polypeptide 4, 90kDa protein-coding GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa O TF3C-delta|TFIIIC 90 kDa subunit|general transcription factor 3C 4|general transcription factor 3C polypeptide 4|transcription factor IIIC 90 kDa subunit|transcription factor IIIC subunit delta 20121230 -9606 9330 GTF3C3 - TFIIIC102|TFIIICgamma|TFiiiC2-102 HGNC:4666|MIM:604888|Ensembl:ENSG00000119041|HPRD:11997|Vega:OTTHUMG00000154633 2 2q33.1 general transcription factor IIIC, polypeptide 3, 102kDa protein-coding GTF3C3 general transcription factor IIIC, polypeptide 3, 102kDa O TF3C-gamma|TFIIIC 102 kDa subunit|general transcription factor 3C polypeptide 3|transcription factor IIIC subunit gamma 20121230 -9606 9331 B4GALT6 - B4Gal-T6|beta4Gal-T6 HGNC:929|MIM:604017|Ensembl:ENSG00000118276|HPRD:06808|Vega:OTTHUMG00000131980 18 18q11 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 protein-coding B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 O UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 6|UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase|UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 6|beta-1,4-GalTase 6|beta-1,4-galactosyltransferase 6|beta4GalT-VI 20121230 -9606 9332 CD163 - M130|MM130 HGNC:1631|MIM:605545|Ensembl:ENSG00000177575|HPRD:05708|Vega:OTTHUMG00000168353 12 12p13.3 CD163 molecule protein-coding CD163 CD163 molecule O hemoglobin scavenger receptor|macrophage-associated antigen|scavenger receptor cysteine-rich type 1 protein M130 20121230 -9606 9333 TGM5 - TGASE5|TGASEX|TGM6|TGMX|TGX HGNC:11781|MIM:603805|Ensembl:ENSG00000104055|HPRD:11949|Vega:OTTHUMG00000176488 15 15q15.2 transglutaminase 5 protein-coding TGM5 transglutaminase 5 O TG(X)|TGase X|TGase-5|protein-glutamine gamma-glutamyltransferase 5|transglutaminase V|transglutaminase X|transglutaminase-5 20121230 -9606 9334 B4GALT5 RP5-1063B2.1 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V HGNC:928|MIM:604016|Ensembl:ENSG00000158470|HPRD:06807|Vega:OTTHUMG00000033086 20 20q13.1-q13.2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 protein-coding B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 O UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 5|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5|UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 5|beta-1,4-GalT II|beta-1,4-GalT IV|beta-1,4-GalTase 5|beta-1,4-galactosyltransferase 5|beta-1.4-galactosyltransferase V|beta4-GalT IV 20121230 -9606 9337 CNOT8 - CAF1|CALIF|POP2|hCAF1 HGNC:9207|MIM:603731|Ensembl:ENSG00000155508|HPRD:07225|Vega:OTTHUMG00000130192 5 5q31-q33 CCR4-NOT transcription complex, subunit 8 protein-coding CNOT8 CCR4-NOT transcription complex, subunit 8 O CAF1-like protein|CAF2|CALIFp|CCR4-NOT transcription complex subunit 8|CCR4-associated factor 8|PGK promoter directed over production 20121230 -9606 9338 TCEAL1 - SIIR|p21|pp21 HGNC:11616|MIM:300237|Ensembl:ENSG00000172465|HPRD:02211|Vega:OTTHUMG00000022699 X Xq22.1 transcription elongation factor A (SII)-like 1 protein-coding TCEAL1 transcription elongation factor A (SII)-like 1 O TCEA-like protein 1|nuclear phosphoprotein p21/SIIR|transcription elongation factor A protein-like 1|transcription elongation factor S-II protein-like 1 20121230 -9606 9340 GLP2R - - HGNC:4325|MIM:603659|Ensembl:ENSG00000065325|HPRD:04713|Vega:OTTHUMG00000130269 17 17p13.3 glucagon-like peptide 2 receptor protein-coding GLP2R glucagon-like peptide 2 receptor O GLP-2 receptor|GLP-2-R|GLP-2R 20121230 -9606 9341 VAMP3 - CEB HGNC:12644|MIM:603657|Ensembl:ENSG00000049245|HPRD:04711|Vega:OTTHUMG00000001225 1 1p36.23 vesicle-associated membrane protein 3 protein-coding VAMP3 vesicle-associated membrane protein 3 O VAMP-3|cellubrevin|synaptobrevin-3 20121230 -9606 9342 SNAP29 - CEDNIK|SNAP-29 HGNC:11133|MIM:604202|Ensembl:ENSG00000099940|HPRD:11968|Vega:OTTHUMG00000150765 22 22q11.21 synaptosomal-associated protein, 29kDa protein-coding SNAP29 synaptosomal-associated protein, 29kDa O soluble 29 kDa NSF attachment protein|synaptosomal-associated protein 29|vesicle-membrane fusion protein SNAP-29 20121230 -9606 9343 EFTUD2 - MFDM|Snrp116|Snu114|U5-116KD HGNC:30858|MIM:603892|Ensembl:ENSG00000108883|HPRD:04869|Vega:OTTHUMG00000179865 17 17q21.31 elongation factor Tu GTP binding domain containing 2 protein-coding EFTUD2 elongation factor Tu GTP binding domain containing 2 O 116 kDa U5 small nuclear ribonucleoprotein component|SNU114 homolog|U5 snRNP-specific protein, 116 kDa|elongation factor Tu GTP-binding domain-containing protein 2|hSNU114 20121230 -9606 9344 TAOK2 UNQ2971/PRO7431 MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2 HGNC:16835|MIM:613199|Ensembl:ENSG00000149930|HPRD:18147|Vega:OTTHUMG00000132111 16 16p11.2 TAO kinase 2 protein-coding TAOK2 TAO kinase 2 O PSK-1|hKFC-C|kinase from chicken homolog C|prostate derived STE20-like kinase PSK|prostate-derived STE20-like kinase 1|prostate-derived sterile 20-like kinase 1|serine/threonine-protein kinase TAO2|thousand and one amino acid protein kinase 2 20121230 -9606 9348 NDST3 UNQ2544 HSST3 HGNC:7682|MIM:603950|Ensembl:ENSG00000164100|Vega:OTTHUMG00000132959 4 4q26 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 protein-coding NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 O GlcNAc N-deacetylase/ N-sulfotransferase 3|N-HSST 3|N-heparan sulfate sulfotransferase 3|NDST-3|bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3|glucosaminyl N-deacetylase/N-sulfotransferase 3|hNDST-3 20121230 -9606 9349 RPL23 - L23|rpL17 HGNC:10316|MIM:603662|Ensembl:ENSG00000125691|HPRD:04716|Vega:OTTHUMG00000133118 17 17q ribosomal protein L23 protein-coding RPL23 ribosomal protein L23 O 60S ribosomal protein L17|60S ribosomal protein L23|ribosomal protein L17 20121230 -9606 9350 CER1 - DAND4 HGNC:1862|MIM:603777|Ensembl:ENSG00000147869|HPRD:04802|Vega:OTTHUMG00000021022 9 9p23-p22 cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis) protein-coding CER1 cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis) O DAN domain family member 4|cerberus|cerberus-related 1|cerberus-related protein 20121230 -9606 9351 SLC9A3R2 - E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1 HGNC:11076|MIM:606553|Ensembl:ENSG00000065054|HPRD:05946|Vega:OTTHUMG00000176956 16 16p13.3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 protein-coding SLC9A3R2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 O NHE3 kinase A regulatory protein E3KARP|NHE3 regulatory factor 2|Na(+)/H(+) exchange regulatory cofactor NHE-RF2|SRY-interacting protein 1|sodium/hydrogen exchanger 3 kinase A regulatory protein|solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulator 2|solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 2|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2|solute carrier family 9 isoform A3 regulatory factor 2|tyrosine kinase activator protein 1 20121230 -9606 9352 TXNL1 - TRP32|TXL-1|TXNL|Txl HGNC:12436|MIM:603049|Ensembl:ENSG00000091164|HPRD:04335|Vega:OTTHUMG00000132722 18 18q21.31 thioredoxin-like 1 protein-coding TXNL1 thioredoxin-like 1 O 32 kDa thioredoxin-related protein|thioredoxin-like protein 1|thioredoxin-related 32 kDa protein|thioredoxin-related protein 1 20121230 -9606 9353 SLIT2 - SLIL3|Slit-2 HGNC:11086|MIM:603746|Ensembl:ENSG00000145147|HPRD:04776|Vega:OTTHUMG00000128551 4 4p15.2 slit homolog 2 (Drosophila) protein-coding SLIT2 slit homolog 2 (Drosophila) O slit homolog 2 protein 20121230 -9606 9354 UBE4A - E4|UBOX2|UFD2 HGNC:12499|MIM:603753|Ensembl:ENSG00000110344|HPRD:06793|Vega:OTTHUMG00000168100 11 11q23.3 ubiquitination factor E4A protein-coding UBE4A ubiquitination factor E4A O ubiquitin conjugation factor E4 A|ubiquitination factor E4A (UFD2 homolog, yeast) 20121230 -9606 9355 LHX2 - LH2|hLhx2 HGNC:6594|MIM:603759|Ensembl:ENSG00000106689|HPRD:04786|Vega:OTTHUMG00000020647 9 9q33.3 LIM homeobox 2 protein-coding LHX2 LIM homeobox 2 O LIM HOX gene 2|LIM homeobox protein 2|LIM/homeobox protein Lhx2|homeobox protein LH-2 20121230 -9606 9356 SLC22A6 - HOAT1|OAT1|PAHT|ROAT1 HGNC:10970|MIM:607582|Ensembl:ENSG00000197901|HPRD:12125|Vega:OTTHUMG00000167767 11 11q12.3 solute carrier family 22 (organic anion transporter), member 6 protein-coding SLC22A6 solute carrier family 22 (organic anion transporter), member 6 O PAH transporter|hPAHT|hROAT1|organic anion transporter 1|para-aminohippurate transporter|renal organic anion transporter 1|solute carrier family 22 member 6 20121230 -9606 9358 ITGBL1 - OSCP|TIED HGNC:6164|MIM:604234|Ensembl:ENSG00000198542|HPRD:07253|Vega:OTTHUMG00000017296 13 13q33 integrin, beta-like 1 (with EGF-like repeat domains) protein-coding ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) O integrin beta-like protein 1|osteoblast-specific cysteine-rich protein|ten integrin EGF-like repeat domain-containing protein 20121230 -9606 9360 PPIG - CARS-Cyp|CYP|SCAF10|SRCyp HGNC:14650|MIM:606093|Ensembl:ENSG00000138398|HPRD:12083|Vega:OTTHUMG00000132206 2 2q31.1 peptidylprolyl isomerase G (cyclophilin G) protein-coding PPIG peptidylprolyl isomerase G (cyclophilin G) O CARS-cyclophilin|CASP10|Clk-associating RS-cyclophilin|PPIase G|SR-cyclophilin|SR-cyp|SR-related CTD-associated factor 10|cyclophilin G|peptidyl-prolyl cis-trans isomerase G|peptidyl-prolyl isomerase G (cyclophilin G)|rotamase G 20121230 -9606 9361 LONP1 - LON|LONP|LonHS|PIM1|PRSS15|hLON HGNC:9479|MIM:605490|Ensembl:ENSG00000196365|HPRD:05689|Vega:OTTHUMG00000180504 19 19p13.2 lon peptidase 1, mitochondrial protein-coding LONP1 lon peptidase 1, mitochondrial O Lon protease-like protein|hLON ATP-dependent protease|lon protease homolog, mitochondrial|mitochondrial ATP-dependent protease Lon|mitochondrial lon peptidase 1|mitochondrial lon protease-like protein|protease, serine, 15|serine protease 15 20121230 -9606 9362 CPNE6 - N-COPINE HGNC:2319|MIM:605688|Ensembl:ENSG00000100884|HPRD:05748|Vega:OTTHUMG00000028781 14 14q11.2 copine VI (neuronal) protein-coding CPNE6 copine VI (neuronal) O copine-6|neuronal copine|neuronal-copine 20121230 -9606 9363 RAB33A RP3-438D16.1 RabS10 HGNC:9773|MIM:300333|Ensembl:ENSG00000134594|HPRD:02272|Vega:OTTHUMG00000022391 X Xq26.1 RAB33A, member RAS oncogene family protein-coding RAB33A RAB33A, member RAS oncogene family O Small GTP-binding protein S10|ras-related protein Rab-33A 20121230 -9606 9364 RAB28 - - HGNC:9768|MIM:612994|Ensembl:ENSG00000157869|HPRD:06699|Vega:OTTHUMG00000090543 4 4p15.33 RAB28, member RAS oncogene family protein-coding RAB28 RAB28, member RAS oncogene family O ras-related protein Rab-28 20121230 -9606 9365 KL - - HGNC:6344|MIM:604824|Ensembl:ENSG00000133116|HPRD:05316|Vega:OTTHUMG00000017408 13 13q12 klotho protein-coding KL klotho O - 20121230 -9606 9366 RAB9BP1 - RAB9P1 HGNC:9793 5 5q21.2 RAB9B, member RAS oncogene family pseudogene 1 pseudo RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 O - 20121230 -9606 9367 RAB9A - RAB9 HGNC:9792|MIM:300284|Ensembl:ENSG00000123595|HPRD:02236|Vega:OTTHUMG00000021156 X Xp22.2 RAB9A, member RAS oncogene family protein-coding RAB9A RAB9A, member RAS oncogene family O RAB9, member RAS oncogene family|ras-related protein Rab-9A 20121230 -9606 9368 SLC9A3R1 - EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2 HGNC:11075|MIM:604990|Ensembl:ENSG00000109062|HPRD:05406|Vega:OTTHUMG00000178863 17 17q25.1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 protein-coding SLC9A3R1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 O Na(+)/H(+) exchange regulatory cofactor NHE-RF1|Na+/H+ exchange regulatory co-factor|ezrin-radixin-moesin binding phosphoprotein-50|ezrin-radixin-moesin-binding phosphoprotein 50|regulatory cofactor of Na(+)/H(+) exchanger|solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 1|solute carrier family 9 isoform A3 regulatory factor 1 20121230 -9606 9369 NRXN3 - C14orf60 HGNC:8010|MIM:600567|Ensembl:ENSG00000021645|HPRD:08989|Vega:OTTHUMG00000171502 14 14q31 neurexin 3 protein-coding NRXN3 neurexin 3 O neurexin III 20121230 -9606 9370 ADIPOQ - ACDC|ACRP30|ADIPQTL1|ADPN|APM-1|APM1|GBP28 HGNC:13633|MIM:605441|Ensembl:ENSG00000181092|HPRD:05671|Vega:OTTHUMG00000156521 3 3q27 adiponectin, C1Q and collagen domain containing protein-coding ADIPOQ adiponectin, C1Q and collagen domain containing O 30 kDa adipocyte complement-related protein|adipocyte complement-related 30 kDa protein|adiponectin|adipose most abundant gene transcript 1 protein|adipose specific collagen-like factor|gelatin-binding protein 28 20121230 -9606 9371 KIF3B - FLA8|HH0048|KLP-11 HGNC:6320|MIM:603754|Ensembl:ENSG00000101350|HPRD:04781|Vega:OTTHUMG00000032214 20 20q11.21 kinesin family member 3B protein-coding KIF3B kinesin family member 3B O kinesin-like protein KIF3B|microtubule plus end-directed kinesin motor 3B 20121230 -9606 9372 ZFYVE9 - MADHIP|NSP|SARA|SMADIP HGNC:6775|MIM:603755|Ensembl:ENSG00000157077|HPRD:04782|Vega:OTTHUMG00000008061 1 1p32.3 zinc finger, FYVE domain containing 9 protein-coding ZFYVE9 zinc finger, FYVE domain containing 9 O MAD homolog interacting protein|MAD, mothers against decapentaplegic homolog interacting protein, receptor activation anchor|MADH-interacting protein|hSARA|mothers against decapentaplegic homolog interacting protein|mothers against decapentaplegic homolog-interacting protein|novel serine protease|receptor activation anchor|smad anchor for receptor activation|zinc finger FYVE domain-containing protein 9 20121230 -9606 9373 PLAA - DOA1|PLA2P|PLAP HGNC:9043|MIM:603873|Ensembl:ENSG00000137055|HPRD:04850|Vega:OTTHUMG00000019708 9 9p21 phospholipase A2-activating protein protein-coding PLAA phospholipase A2-activating protein O DOA1 homolog|phospholipase A-2-activating protein|phospholipase A2 activating protein 20121230 -9606 9374 PPT2 DAAP-218M18.9 C6orf8|G14|PPT-2 HGNC:9326|MIM:603298|Ensembl:ENSG00000221988|Ensembl:ENSG00000258388|HPRD:04486|Vega:OTTHUMG00000031257 6 6p21.3 palmitoyl-protein thioesterase 2 protein-coding PPT2 palmitoyl-protein thioesterase 2 O S-thioesterase G14|VE-statin2|lysosomal thioesterase PPT2|palmitoyl-protein hydrolase 2 20121230 -9606 9375 TM9SF2 - P76 HGNC:11865|MIM:604678|Ensembl:ENSG00000125304|HPRD:09198|Vega:OTTHUMG00000017272 13 13q32.3 transmembrane 9 superfamily member 2 protein-coding TM9SF2 transmembrane 9 superfamily member 2 O 76 kDa membrane protein|transmembrane protein 9 superfamily member 2 20121230 -9606 9376 SLC22A8 - OAT3 HGNC:10972|MIM:607581|Ensembl:ENSG00000149452|Vega:OTTHUMG00000167768 11 11q11 solute carrier family 22 (organic anion transporter), member 8 protein-coding SLC22A8 solute carrier family 22 (organic anion transporter), member 8 O hOAT3|organic anion transporter 3|solute carrier family 22 member 8 20121230 -9606 9377 COX5A - COX|COX-VA|VA HGNC:2267|MIM:603773|Ensembl:ENSG00000178741|HPRD:04799|Vega:OTTHUMG00000142825 15 15q24.1 cytochrome c oxidase subunit Va protein-coding COX5A cytochrome c oxidase subunit Va O cytochrome c oxidase polypeptide Va|cytochrome c oxidase polypeptide, mitochondrial|cytochrome c oxidase subunit 5A, mitochondrial|mitochondrial cytochrome c oxidase subunit Va 20121230 -9606 9378 NRXN1 - Hs.22998|PTHSL2|SCZD17 HGNC:8008|MIM:600565|Ensembl:ENSG00000179915|HPRD:11858|Vega:OTTHUMG00000129263 2 2p16.3 neurexin 1 protein-coding NRXN1 neurexin 1 O neurexin I|neurexin-1-beta 20121230 -9606 9379 NRXN2 - - HGNC:8009|MIM:600566|Ensembl:ENSG00000110076|HPRD:11859|Vega:OTTHUMG00000045214 11 11q13 neurexin 2 protein-coding NRXN2 neurexin 2 O neurexin II|neurexin-2-beta 20121230 -9606 9380 GRHPR RP11-397D12.2 GLXR|GLYD|PH2 HGNC:4570|MIM:604296|Ensembl:ENSG00000137106|HPRD:05052|Vega:OTTHUMG00000019914 9 9q12 glyoxylate reductase/hydroxypyruvate reductase protein-coding GRHPR glyoxylate reductase/hydroxypyruvate reductase O glycerate-2-dehydrogenase 20121230 -9606 9381 OTOF - AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 HGNC:8515|MIM:603681|Ensembl:ENSG00000115155|HPRD:04727|Vega:OTTHUMG00000096977 2 2p23.1 otoferlin protein-coding OTOF otoferlin O fer-1-like protein 2|otoferlin transcript variant 46-48 20121230 -9606 9382 COG1 - CDG2G|LDLB HGNC:6545|MIM:606973|Ensembl:ENSG00000166685|HPRD:07371|Vega:OTTHUMG00000178344 17 17q25.1 component of oligomeric golgi complex 1 protein-coding COG1 component of oligomeric golgi complex 1 O COG complex subunit 1|conserved oligomeric Golgi complex protein 1|conserved oligomeric Golgi complex subunit 1|low density lipoprotein receptor defect B complementing 20121230 -9606 9383 TSIX - LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS HGNC:12377|MIM:300181 X Xq13.2 TSIX transcript, XIST antisense RNA miscRNA TSIX TSIX transcript, XIST antisense RNA O - 20121230 -9606 9384 COX6CP1 - - HGNC:2286 16 16p12 cytochrome c oxidase subunit VIc pseudogene 1 pseudo COX6CP1 cytochrome c oxidase subunit VIc pseudogene 1 O - 20121230 -9606 9385 COX5AP1 - - HGNC:2268 14 14q22 cytochrome c oxidase subunit Va pseudogene 1 pseudo COX5AP1 cytochrome c oxidase subunit Va pseudogene 1 O - 20121230 -9606 9386 COX7CP1 - - HGNC:2293 13 13q14-q21 cytochrome c oxidase subunit VIIc pseudogene 1 pseudo COX7CP1 cytochrome c oxidase subunit VIIc pseudogene 1 O - 20121230 -9606 9388 LIPG UNQ387/PRO719 EDL|EL|PRO719 HGNC:6623|MIM:603684|Ensembl:ENSG00000101670|HPRD:04730|Vega:OTTHUMG00000179658 18 18q21.1 lipase, endothelial protein-coding LIPG lipase, endothelial O endothelial cell-derived lipase|endothelial lipase|lipoprotein lipase H 20121230 -9606 9389 SLC22A14 - OCTL2|OCTL4|ORCTL4 HGNC:8495|MIM:604048|Ensembl:ENSG00000144671|HPRD:06811|Vega:OTTHUMG00000131082 3 3p21.3 solute carrier family 22, member 14 protein-coding SLC22A14 solute carrier family 22, member 14 O ORCTL-4|organic cation transporter-like 4|organic cationic transporter-like 4|solute carrier family 22 (organic cation transporter), member 14|solute carrier family 22 member 14 20121230 -9606 9390 SLC22A13 - OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 HGNC:8494|MIM:604047|Ensembl:ENSG00000172940|HPRD:06810|Vega:OTTHUMG00000131086 3 3p21.3 solute carrier family 22 (organic anion transporter), member 13 protein-coding SLC22A13 solute carrier family 22 (organic anion transporter), member 13 O organic cation transporter-like 3|organic cationic transporter-like 3|organic-cation transporter like 3|solute carrier family 22 member 13|solute carrier family 22, member 13 20121230 -9606 9391 CIAO1 - CIA1|WDR39 HGNC:14280|MIM:604333|Ensembl:ENSG00000144021|HPRD:16057|Vega:OTTHUMG00000130452 2 2q11.2 cytosolic iron-sulfur protein assembly 1 protein-coding CIAO1 cytosolic iron-sulfur protein assembly 1 O WD repeat domain 39|WD repeat-containing protein 39|WD40 protein Ciao1|cytosolic iron-sulfur protein assembly 1 homolog|probable cytosolic iron-sulfur protein assembly protein CIAO1 20121230 -9606 9392 TGFBRAP1 - TRAP-1|TRAP1 HGNC:16836|MIM:606237|Ensembl:ENSG00000135966|HPRD:06948|Vega:OTTHUMG00000130809 2 2q12.1 transforming growth factor, beta receptor associated protein 1 protein-coding TGFBRAP1 transforming growth factor, beta receptor associated protein 1 O TGF beta receptor associated protein -1|TGF-beta receptor-associated protein 1|transforming growth factor-beta receptor-associated protein 1 20121230 -9606 9394 HS6ST1 - HH15|HS6ST HGNC:5201|MIM:604846|Ensembl:ENSG00000136720|HPRD:07274|Vega:OTTHUMG00000153542 2 2q21 heparan sulfate 6-O-sulfotransferase 1 protein-coding HS6ST1 heparan sulfate 6-O-sulfotransferase 1 O HS6ST-1|heparan-sulfate 6-O-sulfotransferase 1|heparan-sulfate 6-sulfotransferase 20121230 -9606 9397 NMT2 RP11-455B2.2 - HGNC:7858|MIM:603801|Ensembl:ENSG00000152465|HPRD:11948|Vega:OTTHUMG00000017723 10 10p13 N-myristoyltransferase 2 protein-coding NMT2 N-myristoyltransferase 2 O NMT 2|glycylpeptide N-tetradecanoyltransferase 2|myristoyl-CoA:protein N-myristoyltransferase 2|peptide N-myristoyltransferase 2|type II N-myristoyltransferase 20121230 -9606 9398 CD101 RP11-27K13.2 IGSF2|V7 HGNC:5949|MIM:604516|Ensembl:ENSG00000134256|HPRD:05154|Vega:OTTHUMG00000012029 1 1p13 CD101 molecule protein-coding CD101 CD101 molecule O EWI-101|cell surface glycoprotein V7|glu-Trp-Ile EWI motif-containing protein 101|immunoglobulin superfamily member 2|immunoglobulin superfamily, member 2|leukocyte surface protein 20121230 -9606 9399 STOML1 MSTP019 SLP-1|STORP|hUNC-24 HGNC:14560|MIM:608326|Ensembl:ENSG00000067221|HPRD:16314|Vega:OTTHUMG00000137608 15 15q24-q25 stomatin (EPB72)-like 1 protein-coding STOML1 stomatin (EPB72)-like 1 O EPB72-like protein 1|protein unc-24 homolog|stomatin (EBP72)-like 1|stomatin-like protein 1|stomatin-related protein 20121230 -9606 9400 RECQL5 - RECQ5 HGNC:9950|MIM:603781|Ensembl:ENSG00000108469|HPRD:04806|Vega:OTTHUMG00000179795 17 17q25 RecQ protein-like 5 protein-coding RECQL5 RecQ protein-like 5 O ATP-dependent DNA helicase Q5|DNA helicase, RecQ-like type 5 20121230 -9606 9401 RECQL4 - RECQ4 HGNC:9949|MIM:603780|HPRD:04805 8 8q24.3 RecQ protein-like 4 protein-coding RECQL4 RecQ protein-like 4 O ATP-dependent DNA helicase Q4|DNA helicase, RecQ-like type 4|DNA helicase, RecQ-like, type 4 20121230 -9606 9402 GRAP2 RP3-370M22.1 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 HGNC:4563|MIM:604518|Ensembl:ENSG00000100351|HPRD:05156|Vega:OTTHUMG00000151097 22 22q13.2 GRB2-related adaptor protein 2 protein-coding GRAP2 GRB2-related adaptor protein 2 O GRB-2-like protein|GRB2-related adapter protein 2|GRB2-related protein with insert domain|SH3-SH2-SH3 adapter Mona|SH3-SH2-SH3 adaptor molecule|adapter protein GRID|grf-40|grf40 adapter protein|growth factor receptor-binding protein|growth factor receptor-bound protein 2-related adaptor protein 2|hematopoietic cell-associated adapter protein GrpL|hematopoietic cell-associated adaptor protein GRPL 20121230 -9606 9403 SEP15 - - MIM:606254|Ensembl:ENSG00000183291|HPRD:09376|Vega:OTTHUMG00000008520 1 1p31 15 kDa selenoprotein protein-coding - - - - 20121230 -9606 9404 LPXN - LDPL HGNC:14061|MIM:605390|Ensembl:ENSG00000110031|HPRD:05651|Vega:OTTHUMG00000167466 11 11q12.1 leupaxin protein-coding LPXN leupaxin O - 20121230 -9606 9406 ZRANB2 - ZIS|ZIS1|ZIS2|ZNF265 HGNC:13058|MIM:604347|Ensembl:ENSG00000132485|HPRD:09185|Vega:OTTHUMG00000009660 1 1p31 zinc finger, RAN-binding domain containing 2 protein-coding ZRANB2 zinc finger, RAN-binding domain containing 2 O zinc finger Ran-binding domain-containing protein 2|zinc finger protein 265|zinc finger, splicing|zinc-finger protein 265|zinc-finger, splicing 20121230 -9606 9407 TMPRSS11D - HAT HGNC:24059|MIM:605369|Ensembl:ENSG00000153802|HPRD:05642|Vega:OTTHUMG00000129300 4 4q13.2 transmembrane protease, serine 11D protein-coding TMPRSS11D transmembrane protease, serine 11D O airway trypsin like protease|airway trypsin-like protease|transmembrane protease serine 11D 20121230 -9606 9409 PEX16 - PBD8A|PBD8B HGNC:8857|MIM:603360|Ensembl:ENSG00000121680|HPRD:04526|Vega:OTTHUMG00000167005 11 11p11.2 peroxisomal biogenesis factor 16 protein-coding PEX16 peroxisomal biogenesis factor 16 O peroxin 16|peroxin-16|peroxisomal membrane protein PEX16|peroxisome biogenesis factor 16 20121230 -9606 9410 SNRNP40 - 40K|HPRP8BP|PRP8BP|PRPF8BP|RP11-490K7.3|SPF38|WDR57 HGNC:30857|MIM:607797|Ensembl:ENSG00000060688|HPRD:08481|Vega:OTTHUMG00000003790 1 1p35.2 small nuclear ribonucleoprotein 40kDa (U5) protein-coding SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) O 38 kDa-splicing factor|Prp8-binding protein|U5 small nuclear ribonucleoprotein 40 kDa protein|U5 snRNP 40 kDa protein|U5 snRNP-specific 40 kDa protein (hPrp8-binding)|U5-40K|U5-40kD protein|WD repeat domain 57 (U5 snRNP specific)|WD repeat-containing protein 57 20121230 -9606 9411 ARHGAP29 - PARG1|RP11-255E17.1 HGNC:30207|MIM:610496|Ensembl:ENSG00000137962|HPRD:06674|Vega:OTTHUMG00000010643 1 1p22.1 Rho GTPase activating protein 29 protein-coding ARHGAP29 Rho GTPase activating protein 29 O PTPL1-associated RhoGAP 1 (PARG1)|PTPL1-associated RhoGAP protein 1|rho GTPase-activating protein 29|rho-type GTPase-activating protein 29 20121230 -9606 9412 MED21 - SRB7|SURB7|hSrb7 HGNC:11473|MIM:603800|Ensembl:ENSG00000152944|HPRD:09156|Vega:OTTHUMG00000169276 12 12p11.23 mediator complex subunit 21 protein-coding MED21 mediator complex subunit 21 O RNA polymerase II holoenzyme component SRB7|RNAPII complex component SRB7|SRB7 suppressor of RNA polymerase B homolog|mediator of RNA polymerase II transcription subunit 21 20121230 -9606 9413 FAM189A2 - C9orf61|RP11-548B3.1|X123 HGNC:24820|MIM:607710|Ensembl:ENSG00000135063|HPRD:16255|Vega:OTTHUMG00000019979 9 9q21.11 family with sequence similarity 189, member A2 protein-coding FAM189A2 family with sequence similarity 189, member A2 O Friedreich ataxia region gene X123|protein FAM189A2 20121230 -9606 9414 TJP2 RP11-16N10.1 C9DUPq21.11|DFNA51|DUP9q21.11|X104|ZO2 HGNC:11828|MIM:607709|Ensembl:ENSG00000119139|HPRD:06369|Vega:OTTHUMG00000019978 9 9q13-q21 tight junction protein 2 protein-coding TJP2 tight junction protein 2 O Friedreich ataxia region gene X104 (tight junction protein ZO-2)|tight junction protein ZO-2|zona occludens 2|zonula occludens protein 2 20121230 -9606 9415 FADS2 - D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 HGNC:3575|MIM:606149|Ensembl:ENSG00000134824|HPRD:05854|Vega:OTTHUMG00000163794 11 11q12.2 fatty acid desaturase 2 protein-coding FADS2 fatty acid desaturase 2 O delta(6) desaturase|delta(6) fatty acid desaturase|delta-6 desaturase|delta-6 fatty acid desaturase|delta-6-desaturase|linoleoyl-CoA desaturase (delta-6-desaturase)-like 2 20121230 -9606 9416 DDX23 - PRPF28|U5-100K|U5-100KD|prp28 HGNC:17347|MIM:612172|Ensembl:ENSG00000174243|HPRD:09908|Vega:OTTHUMG00000170399 12 12q13.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 protein-coding DDX23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 O 100 kDa U5 snRNP-specific protein|DEAD box protein 23|PRP28 homolog, yeast|PRP28p homolog|U5 snRNP 100 kD protein|probable ATP-dependent RNA helicase DDX23 20121230 -9606 9419 CRIPT HSPC139 - HGNC:14312|MIM:604594|Ensembl:ENSG00000119878|HPRD:05208|Vega:OTTHUMG00000128815 2 2p21 cysteine-rich PDZ-binding protein protein-coding CRIPT cysteine-rich PDZ-binding protein O cysteine-rich interactor of PDZ three|cysteine-rich interactor of PDZ3|postsynaptic protein CRIPT 20121230 -9606 9420 CYP7B1 - CBAS3|CP7B|SPG5A HGNC:2652|MIM:603711|Ensembl:ENSG00000172817|HPRD:04753|Vega:OTTHUMG00000164387 8 8q21.3 cytochrome P450, family 7, subfamily B, polypeptide 1 protein-coding CYP7B1 cytochrome P450, family 7, subfamily B, polypeptide 1 O 25-hydroxycholesterol 7-alpha-hydroxylase|cytochrome P450 7B1|cytochrome P450, subfamily VIIB (oxysterol 7 alpha-hydroxylase), polypeptide 1|oxysterol 7-alpha-hydroxylase|oxysterol 7alpha-hydroxylase 20121230 -9606 9421 HAND1 - Hxt|Thing1|bHLHa27|eHand HGNC:4807|MIM:602406|Ensembl:ENSG00000113196|HPRD:03871|Vega:OTTHUMG00000130193 5 5q33 heart and neural crest derivatives expressed 1 protein-coding HAND1 heart and neural crest derivatives expressed 1 O class A basic helix-loop-helix protein 27|extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1|heart- and neural crest derivatives-expressed protein 1 20121230 -9606 9422 ZNF264 - - HGNC:13057|MIM:604668|Ensembl:ENSG00000083844|HPRD:05237 19 19q13.4 zinc finger protein 264 protein-coding ZNF264 zinc finger protein 264 O - 20121230 -9606 9423 NTN1 - NTN1L HGNC:8029|MIM:601614|Ensembl:ENSG00000065320|HPRD:03368|Vega:OTTHUMG00000130257 17 17p13-p12 netrin 1 protein-coding NTN1 netrin 1 O epididymis tissue protein Li 131P|netrin 1, mouse, homolog of|netrin-1 20121230 -9606 9424 KCNK6 - K2p6.1|KCNK8|TOSS|TWIK-2|TWIK2 HGNC:6281|MIM:603939|Ensembl:ENSG00000099337|HPRD:06803|Vega:OTTHUMG00000182325 19 19q13.1 potassium channel, subfamily K, member 6 protein-coding KCNK6 potassium channel, subfamily K, member 6 O K2P6.1 potassium channel|TWIK-originated similarity sequence|TWIK-originated sodium similarity sequence|inward rectifying potassium channel protein TWIK-2|potassium channel subfamily K member 6 20121230 -9606 9425 CDYL - CDYL1 HGNC:1811|MIM:603778|Ensembl:ENSG00000153046|HPRD:04803|Vega:OTTHUMG00000014170 6 6p25.1 chromodomain protein, Y-like protein-coding CDYL chromodomain protein, Y-like O CDY-like, autosomal|chromodomain Y-like protein|testis-specific chromodomain Y-like protein 20121230 -9606 9426 CDY2A - CDY|CDY2 HGNC:1810|MIM:400018|Ensembl:ENSG00000182415|HPRD:02459|Vega:OTTHUMG00000041657 Y Yq11.221 chromodomain protein, Y-linked, 2A protein-coding CDY2A chromodomain protein, Y-linked, 2A O Y chromosome chromodomain protein 2A|chromodomain protein, Y chromosome, 2|testis-specific chromodomain protein Y 2 20121230 -9606 9427 ECEL1 UNQ2431/PRO4991 DINE|ECEX|XCE HGNC:3147|MIM:605896|Ensembl:ENSG00000171551|HPRD:07066|Vega:OTTHUMG00000133262 2 2q37.1 endothelin converting enzyme-like 1 protein-coding ECEL1 endothelin converting enzyme-like 1 O X converting enzyme|damage induced neuronal endopeptidase|endothelin-converting enzyme-like 1 20121230 -9606 9429 ABCG2 - ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR1|UAQTL1 HGNC:74|MIM:603756|Ensembl:ENSG00000118777|HPRD:04783|Vega:OTTHUMG00000130601 4 4q22 ATP-binding cassette, sub-family G (WHITE), member 2 protein-coding ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 O ABC transporter|ATP-binding cassette sub-family G member 2|ATP-binding cassette transporter G2|breast cancer resistance protein|mitoxantrone resistance-associated protein|multi drug resistance efflux transport ATP-binding cassette sub-family G (WHITE) member 2|placenta specific MDR protein|placenta-specific ATP-binding cassette transporter 20121230 -9606 9430 MYLKP1 - MYLKP HGNC:7591 3 3p13 myosin light chain kinase pseudogene 1 pseudo MYLKP1 myosin light chain kinase pseudogene 1 O - 20121230 -9606 9431 OR7E22P - OR3.6|OR6DG HGNC:8394 3 3p13 olfactory receptor, family 7, subfamily E, member 22 pseudogene pseudo OR7E22P olfactory receptor, family 7, subfamily E, member 22 pseudogene O - 20121230 -9606 9432 OR7E21P - OR4DG|OR7E127P|OR7E141P|OR7E142P|OR7E49P|OST035 HGNC:8393 3 3q21.1 olfactory receptor, family 7, subfamily E, member 21 pseudogene pseudo OR7E21P olfactory receptor, family 7, subfamily E, member 21 pseudogene O - 20121230 -9606 9435 CHST2 - C6ST|GST-2|GST2|Gn6ST-1|glcNAc6ST-1 HGNC:1970|MIM:603798|Ensembl:ENSG00000175040|HPRD:04814|Vega:OTTHUMG00000159351 3 3q24 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 protein-coding CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 O N-acetylglucosamine 6-O-sulfotransferase 1|carbohydrate (chondroitin 6/keratan) sulfotransferase 2|carbohydrate sulfotransferase 2|galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 2 20121230 -9606 9436 NCR2 RP1-149M18.2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 HGNC:6732|MIM:604531|Ensembl:ENSG00000096264|HPRD:05168|Vega:OTTHUMG00000014678 6 6p21.1 natural cytotoxicity triggering receptor 2 protein-coding NCR2 natural cytotoxicity triggering receptor 2 O NK cell activating receptor (NKp44)|NK cell-activating receptor|lymphocyte antigen 95 (activating NK-receptor; NK-p44)|lymphocyte antigen 95 homolog (activating NK-receptor; NK-p44)|natural killer cell p44-related protein 20121230 -9606 9437 NCR1 XXbac-BCX195L8.10-004 CD335|LY94|NK-p46|NKP46 HGNC:6731|MIM:604530|Ensembl:ENSG00000189430|HPRD:05167 19 19q13.42 natural cytotoxicity triggering receptor 1 protein-coding NCR1 natural cytotoxicity triggering receptor 1 O NK cell-activating receptor|lymphocyte antigen 94 homolog (activating NK-receptor; NK-p46)|natural killer cell p46-related protein 20121230 -9606 9439 MED23 RP5-914N13.2 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 HGNC:2372|MIM:605042|Ensembl:ENSG00000112282|HPRD:05436|Vega:OTTHUMG00000015565 6 6q22.33-q24.1 mediator complex subunit 23 protein-coding MED23 mediator complex subunit 23 O 130 kDa transcriptional co-activator|133 kDa transcriptional co-activator|activator-recruited cofactor 130 kDa component|cofactor required for Sp1 transcriptional activation subunit 3|mediator of RNA polymerase II transcription subunit 23|vitamin D3 receptor interacting protein 20121230 -9606 9440 MED17 - CRSP6|CRSP77|DRIP80|TRAP80 HGNC:2375|MIM:603810|Ensembl:ENSG00000042429|HPRD:04816|Vega:OTTHUMG00000167497 11 11q14 mediator complex subunit 17 protein-coding MED17 mediator complex subunit 17 O ARC77|CRSP complex subunit 6|activator-recruited cofactor 77 kDa component|cofactor required for Sp1 transcriptional activation, subunit 6, 77kDa|mediator of RNA polymerase II transcription subunit 17|thyroid hormone receptor-associated protein complex 80 kDa component|transcriptional coactivator CRSP77|vitamin D3 receptor-interacting protein complex 80 kDa component 20121230 -9606 9441 MED26 - CRSP7|CRSP70 HGNC:2376|MIM:605043|Ensembl:ENSG00000105085|HPRD:05437 19 19p13.11 mediator complex subunit 26 protein-coding MED26 mediator complex subunit 26 O ARC70|CRSP complex subunit 7|activator-recruited cofactor 70 kDa component|cofactor required for Sp1 transcriptional activation subunit 7|cofactor required for Sp1 transcriptional activation, subunit 7 (70kD)|cofactor required for Sp1 transcriptional activation, subunit 7, 70kDa|mediator of RNA polymerase II transcription subunit 26|transcriptional coactivator CRSP70 20121230 -9606 9442 MED27 RP11-323H21.4 CRAP34|CRSP34|CRSP8|TRAP37 HGNC:2377|MIM:605044|Ensembl:ENSG00000160563|HPRD:05438|Vega:OTTHUMG00000020833 9 9q34.13 mediator complex subunit 27 protein-coding MED27 mediator complex subunit 27 O CRSP complex subunit 8|cofactor required for Sp1 transcriptional activation, subunit 8, 34kDa|mediator of RNA polymerase II transcription subunit 27|p37 TRAP/SMCC/PC2 subunit|transcriptional coactivator CRSP34 20121230 -9606 9443 MED7 - ARC34|CRSP33|CRSP9 HGNC:2378|MIM:605045|Ensembl:ENSG00000155868|HPRD:05439|Vega:OTTHUMG00000130243 5 5q33.3 mediator complex subunit 7 protein-coding MED7 mediator complex subunit 7 O CRSP complex subunit 9|RNA polymerase transcriptional regulation mediator subunit 7 homolog|activator-recruited cofactor 34 kDa component|cofactor required for Sp1 transcriptional activation subunit 9|cofactor required for Sp1 transcriptional activation, subunit 9 (33kD)|cofactor required for Sp1 transcriptional activation, subunit 9, 33kDa|mediator of RNA polymerase II transcription subunit 7|transcriptional coactivator CRSP33 20121230 -9606 9444 QKI - Hqk|QK|QK1|QK3|hqkI HGNC:21100|MIM:609590|Ensembl:ENSG00000112531|HPRD:06691|Vega:OTTHUMG00000015977 6 6q26 QKI, KH domain containing, RNA binding protein-coding QKI QKI, KH domain containing, RNA binding O RNA binding protein HQK|homolog of mouse quaking QKI (KH domain RNA binding protein)|protein quaking|quaking homolog, KH domain RNA binding 20121230 -9606 9445 ITM2B RP11-196P14.1 ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|imBRI2 HGNC:6174|MIM:603904|Ensembl:ENSG00000136156|HPRD:04878|Vega:OTTHUMG00000016894 13 13q14.3 integral membrane protein 2B protein-coding ITM2B integral membrane protein 2B O ABri/ADan amyloid peptide|BRICHOS domain containing 2B|immature BRI2|transmembrane protein BRI 20121230 -9606 9446 GSTO1 RP11-99N20.1 GSTO 1-1|GSTTLp28|P28|SPG-R HGNC:13312|MIM:605482|Ensembl:ENSG00000148834|HPRD:10401|Vega:OTTHUMG00000019001 10 10q25.1 glutathione S-transferase omega 1 protein-coding GSTO1 glutathione S-transferase omega 1 O GSTO-1|MMA(V) reductase|S-(Phenacyl)glutathione reductase|glutathione S-transferase omega 1-1|glutathione S-transferase omega-1|glutathione-S-transferase like|glutathione-dependent dehydroascorbate reductase|monomethylarsonic acid reductase 20121230 -9606 9447 AIM2 RP11-520H16.3 PYHIN4 HGNC:357|MIM:604578|Ensembl:ENSG00000163568|HPRD:05202|Vega:OTTHUMG00000037183 1 1q22 absent in melanoma 2 protein-coding AIM2 absent in melanoma 2 O interferon-inducible protein AIM2 20121230 -9606 9448 MAP4K4 - FLH21957|HGK|MEKKK4|NIK HGNC:6866|MIM:604666|Ensembl:ENSG00000071054|HPRD:05235|Vega:OTTHUMG00000155394 2 2q11.2-q12 mitogen-activated protein kinase kinase kinase kinase 4 protein-coding MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 O HPK/GCK-like kinase HGK|MAPK/ERK kinase kinase kinase 4|MEK kinase kinase 4|Ste20 group protein kinase HGK|hepatocyte progenitor kinase-like/germinal center kinase-like kinase|nck-interacting kinase 20121230 -9606 9450 LY86 RP1-80N2.1 MD-1|MMD-1|dJ80N2.1 HGNC:16837|MIM:605241|Ensembl:ENSG00000112799|HPRD:05578|Vega:OTTHUMG00000014190 6 6p25.1 lymphocyte antigen 86 protein-coding LY86 lymphocyte antigen 86 O MD-1, RP105-associated|ly-86|protein MD-1 20121230 -9606 9451 EIF2AK3 - PEK|PERK|WRS HGNC:3255|MIM:604032|Ensembl:ENSG00000172071|HPRD:04942|Vega:OTTHUMG00000155046 2 2p12 eukaryotic translation initiation factor 2-alpha kinase 3 protein-coding EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 O PRKR-like endoplasmic reticulum kinase|eukaryotic translation initiation factor 2 alpha kinase 3|hsPEK|pancreatic EIF2-alpha kinase 20121230 -9606 9452 ITM2A RP4-696H22.1 BRICD2A|E25A HGNC:6173|MIM:300222|Ensembl:ENSG00000078596|HPRD:02200|Vega:OTTHUMG00000021900 X Xq13.3-Xq21.2 integral membrane protein 2A protein-coding ITM2A integral membrane protein 2A O BRICHOS domain containing 2A 20121230 -9606 9453 GGPS1 - GGPPS|GGPPS1 HGNC:4249|MIM:606982|Ensembl:ENSG00000152904|HPRD:06099|Vega:OTTHUMG00000037963 1 1q43 geranylgeranyl diphosphate synthase 1 protein-coding GGPS1 geranylgeranyl diphosphate synthase 1 O (2E,6E)-farnesyl diphosphate synthase|GGPP synthase|GGPPSase|dimethylallyltranstransferase|farnesyl diphosphate synthase|farnesyltranstransferase|geranylgeranyl pyrophosphate synthase|geranyltranstransferase 20121230 -9606 9454 HOMER3 - HOMER-3|VESL3 HGNC:17514|MIM:604800|Ensembl:ENSG00000051128|HPRD:07270 19 19p13.11 homer homolog 3 (Drosophila) protein-coding HOMER3 homer homolog 3 (Drosophila) O Homer, neuronal immediate early gene, 3|homer protein homolog 3 20121230 -9606 9455 HOMER2 - ACPD|CPD|HOMER-2|VESL-2 HGNC:17513|MIM:604799|Ensembl:ENSG00000103942|HPRD:07269|Vega:OTTHUMG00000172462 15 15q24.3 homer homolog 2 (Drosophila) protein-coding HOMER2 homer homolog 2 (Drosophila) O cupidin|homer homolog 3|homer protein homolog 2|homer, neuronal immediate early gene, 2 20121230 -9606 9456 HOMER1 - HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 HGNC:17512|MIM:604798|Ensembl:ENSG00000152413|HPRD:09211|Vega:OTTHUMG00000134278 5 5q14.2 homer homolog 1 (Drosophila) protein-coding HOMER1 homer homolog 1 (Drosophila) O homer protein homolog 1|homer, neuronal immediate early gene, 1|homer-1 20121230 -9606 9457 FHL5 - ACT|RP3-393D12.2|dJ393D12.2 HGNC:17371|MIM:605126|Ensembl:ENSG00000112214|HPRD:05497|Vega:OTTHUMG00000015239 6 6q16.1-q16.3 four and a half LIM domains 5 protein-coding FHL5 four and a half LIM domains 5 O 1700027G07Rik|FHL-5|LIM protein ACT|activator of CREM in testis|activator of cAMP-responsive element modulator (CREM) in testis|activator of cAMP-responsive element modulator in testis|four and a half LIM domains protein 5 20121230 -9606 9459 ARHGEF6 RP3-527F8.4 COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX HGNC:685|MIM:300267|Ensembl:ENSG00000129675|HPRD:02226|Vega:OTTHUMG00000022518 X Xq26.3 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 protein-coding ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 O PAK-interacting exchange factor alpha|PAK-interacting exchange factor, alpha|Rac/Cdc42 guanine exchange factor (GEF) 6|rac/Cdc42 guanine nucleotide exchange factor 6|rho guanine nucleotide exchange factor 6 20121230 -9606 9462 RASAL2 RP4-593C16.1 NGAP HGNC:9874|MIM:606136|Ensembl:ENSG00000075391|HPRD:05845|Vega:OTTHUMG00000035022 1 1q24 RAS protein activator like 2 protein-coding RASAL2 RAS protein activator like 2 O RAS protein activator-like 2|Ras protein activator like 1|ras GTPase-activating protein nGAP 20121230 -9606 9463 PICK1 RP5-1039K5.11-004 PICK|PRKCABP HGNC:9394|MIM:605926|Ensembl:ENSG00000100151|HPRD:16176|Vega:OTTHUMG00000151159 22 22q13.1 protein interacting with PRKCA 1 protein-coding PICK1 protein interacting with PRKCA 1 O PRKCA-binding protein|protein interacting with C kinase 1|protein kinase C-alpha-binding protein 20121230 -9606 9464 HAND2 - DHAND2|Hed|Thing2|bHLHa26|dHand HGNC:4808|MIM:602407|Ensembl:ENSG00000164107|HPRD:03872|Vega:OTTHUMG00000160775 4 4q33 heart and neural crest derivatives expressed 2 protein-coding HAND2 heart and neural crest derivatives expressed 2 O basic helix-loop-helix transcription factor HAND2|class A basic helix-loop-helix protein 26|deciduum, heart, autonomic nervous system and neural crest derivatives-expressed protein 2|heart- and neural crest derivatives-expressed protein 2 20121230 -9606 9465 AKAP7 - AKAP15|AKAP18 HGNC:377|MIM:604693|Ensembl:ENSG00000118507|HPRD:16065|Vega:OTTHUMG00000015563 6 6q23 A kinase (PRKA) anchor protein 7 protein-coding AKAP7 A kinase (PRKA) anchor protein 7 O A-kinase anchor protein 18 kDa|A-kinase anchor protein 7 isoform gamma|A-kinase anchor protein 7 isoforms alpha and beta|A-kinase anchor protein 9 kDa|AKAP 18|AKAP-7 isoform gamma|AKAP-7 isoforms alpha and beta|PRKA7 isoform gamma|PRKA7 isoforms alpha/beta 20121230 -9606 9466 IL27RA UNQ296/PRO336 CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1 HGNC:17290|MIM:605350|Ensembl:ENSG00000104998|HPRD:09247|Vega:OTTHUMG00000181990 19 19p13.11 interleukin 27 receptor, alpha protein-coding IL27RA interleukin 27 receptor, alpha O IL-27 receptor subunit alpha|IL-27R subunit alpha|IL-27R-alpha|T-cell cytokine receptor type 1|class I cytokine receptor|cytokine receptor-like 1|interleukin-27 receptor subunit alpha|type I T-cell cytokine receptor 20121230 -9606 9467 SH3BP5 - SAB|SH3BP-5 HGNC:10827|MIM:605612|Ensembl:ENSG00000131370|HPRD:12030|Vega:OTTHUMG00000129859 3 3p24.3 SH3-domain binding protein 5 (BTK-associated) protein-coding SH3BP5 SH3-domain binding protein 5 (BTK-associated) O SH3 domain-binding protein 5|SH3 domain-binding protein that preferentially associates with BTK 20121230 -9606 9468 PCYT1B - CCTB|CTB HGNC:8755|MIM:604926|Ensembl:ENSG00000102230|HPRD:05376|Vega:OTTHUMG00000021270 X Xp22.11 phosphate cytidylyltransferase 1, choline, beta protein-coding PCYT1B phosphate cytidylyltransferase 1, choline, beta O CCT B|CCT-beta|CT B|CTP:phosphocholine cytidylyltransferase b|choline-phosphate cytidylyltransferase B|phosphorylcholine transferase B 20121230 -9606 9469 CHST3 - C6ST|C6ST1|HSD HGNC:1971|MIM:603799|Ensembl:ENSG00000122863|HPRD:07052|Vega:OTTHUMG00000018431 10 10q22.1 carbohydrate (chondroitin 6) sulfotransferase 3 protein-coding CHST3 carbohydrate (chondroitin 6) sulfotransferase 3 O C6ST-1|GST-0|carbohydrate sulfotransferase 3|chondroitin 6-O-sulfotransferase 1|galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 0 20121230 -9606 9470 EIF4E2 - 4E-LP|4EHP|EIF4EL3|IF4e HGNC:3293|MIM:605895|Ensembl:ENSG00000135930|HPRD:05798|Vega:OTTHUMG00000133256 2 2q37.1 eukaryotic translation initiation factor 4E family member 2 protein-coding EIF4E2 eukaryotic translation initiation factor 4E family member 2 O eIF-4E type 2|eIF4E type 2|eIF4E-like cap-binding protein|eIF4E-like protein 4E-LP|eukaryotic translation initiation factor 4E homologous protein|eukaryotic translation initiation factor 4E member 2|eukaryotic translation initiation factor 4E type 2|eukaryotic translation initiation factor 4E-like 3|mRNA cap-binding protein 4EHP|mRNA cap-binding protein type 3 20121230 -9606 9472 AKAP6 - ADAP100|ADAP6|AKAP100|PRKA6|mAKAP HGNC:376|MIM:604691|Ensembl:ENSG00000151320|HPRD:05257|Vega:OTTHUMG00000140207 14 14q12 A kinase (PRKA) anchor protein 6 protein-coding AKAP6 A kinase (PRKA) anchor protein 6 O A-kinase anchor protein 100 kDa|A-kinase anchor protein 6|AKAP 100|AKAP-6|protein kinase A anchoring protein 6|protein kinase A-anchoring protein 6 20121230 -9606 9473 THEMIS2 RP4-547C9.2 C1orf38|ICB-1 HGNC:16839|Ensembl:ENSG00000130775|HPRD:12728|Vega:OTTHUMG00000003735 1 1p35.3 thymocyte selection associated family member 2 protein-coding THEMIS2 thymocyte selection associated family member 2 O basement membrane-induced|induced by contact to basement membrane 1 protein|protein ICB-1|protein THEMIS2|thymocyte-expressed molecule involved in selection protein 2 20121230 -9606 9474 ATG5 - APG5|APG5-LIKE|APG5L|ASP|hAPG5 HGNC:589|MIM:604261|Ensembl:ENSG00000057663|HPRD:16051|Vega:OTTHUMG00000016193 6 6q21 autophagy related 5 protein-coding ATG5 autophagy related 5 O ATG5 autophagy related 5 homolog|apoptosis specific protein|apoptosis-specific protein|autophagy protein 5 20121230 -9606 9475 ROCK2 - ROCK-II HGNC:10252|MIM:604002|Ensembl:ENSG00000134318|HPRD:04922|Vega:OTTHUMG00000149916 2 2p24 Rho-associated, coiled-coil containing protein kinase 2 protein-coding ROCK2 Rho-associated, coiled-coil containing protein kinase 2 O p164 ROCK-2|rho-associated protein kinase 2|rho-associated, coiled-coil-containing protein kinase II 20121230 -9606 9476 NAPSA - KAP|Kdap|NAP1|NAPA|SNAPA HGNC:13395|MIM:605631|Ensembl:ENSG00000131400|HPRD:07064 19 19q13.33 napsin A aspartic peptidase protein-coding NAPSA napsin A aspartic peptidase O ASP4|TA01/TA02|asp 4|aspartyl protease 4|kidney-derived aspartic protease-like protein|napsin-1|napsin-A|pronapsin A 20121230 -9606 9477 MED20 RP5-973N23.1 PRO0213|TRFP HGNC:16840|MIM:612915|Ensembl:ENSG00000124641|HPRD:15638|Vega:OTTHUMG00000014689 6 6p21.1 mediator complex subunit 20 protein-coding MED20 mediator complex subunit 20 O TRF-proximal protein homolog|Trf (TATA binding protein-related factor)-proximal homolog|hTRFP|mediator complex subunit 20mediator complex subunit 20mediator complex subunit 20Trf (TATA binding protein-related factor)-proximal homolog|mediator of RNA polymerase II transcription subunit 20 20121230 -9606 9478 CABP1 - CALBRAIN|HCALB_BR HGNC:1384|MIM:605563|Ensembl:ENSG00000157782|Vega:OTTHUMG00000156794 12 12q24.31 calcium binding protein 1 protein-coding CABP1 calcium binding protein 1 O calcium binding protein 5|calcium-binding protein 1|caldendrin 20121230 -9606 9479 MAPK8IP1 - IB1|JIP-1|JIP1|PRKM8IP HGNC:6882|MIM:604641|Ensembl:ENSG00000121653|HPRD:05223|Vega:OTTHUMG00000134324 11 11p11.2 mitogen-activated protein kinase 8 interacting protein 1 protein-coding MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 O C-Jun-amino-terminal kinase-interacting protein 1|IB-1|JNK MAP kinase scaffold protein 1|JNK-interacting protein 1|PRKM8 interacting protein|islet-brain 1 20121230 -9606 9480 ONECUT2 - OC-2|OC2 HGNC:8139|MIM:604894|Ensembl:ENSG00000119547|HPRD:05354|Vega:OTTHUMG00000159776 18 18q21.31 one cut homeobox 2 protein-coding ONECUT2 one cut homeobox 2 O HNF-6-beta|ONECUT-2 homeodomain transcription factor|hepatocyte nuclear factor 6-beta|one cut domain family member 2|one cut domain, family member 2|onecut 2|transcription factor ONECUT-2 20121230 -9606 9481 SLC25A27 RP11-446F17.2 UCP4 HGNC:21065|MIM:613725|Ensembl:ENSG00000153291|HPRD:15358|Vega:OTTHUMG00000014786 6 6p12.3 solute carrier family 25, member 27 protein-coding SLC25A27 solute carrier family 25, member 27 O UCP 4|mitochondrial uncoupling protein 4|uncoupling protein 4 20121230 -9606 9482 STX8 - CARB HGNC:11443|MIM:604203|Ensembl:ENSG00000170310|HPRD:05012|Vega:OTTHUMG00000177844 17 17p12 syntaxin 8 protein-coding STX8 syntaxin 8 O CIP-1-associated regulator of cyclin B|syntaxin-8 20121230 -9606 9486 CHST10 - HNK-1ST|HNK1ST HGNC:19650|MIM:606376|Ensembl:ENSG00000115526|HPRD:07332|Vega:OTTHUMG00000130669 2 2q11.2 carbohydrate sulfotransferase 10 protein-coding CHST10 carbohydrate sulfotransferase 10 O HNK-1 sulfotransferase|huHNK-1ST 20121230 -9606 9487 PIGL - CHIME HGNC:8966|MIM:605947|Ensembl:ENSG00000108474|HPRD:12071|Vega:OTTHUMG00000059346 17 17p12-p11.2 phosphatidylinositol glycan anchor biosynthesis, class L protein-coding PIGL phosphatidylinositol glycan anchor biosynthesis, class L O N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase|N-acetylglucosaminylphosphatidylinositol deacetylase|PIG-L|phosphatidylinositol glycan, class L|phosphatidylinositol-glycan biosynthesis class L protein 20121230 -9606 9488 PIGB - GPI-MT-III|PIG-B HGNC:8959|MIM:604122|Ensembl:ENSG00000069943|HPRD:04988|Vega:OTTHUMG00000172654 15 15q21.3 phosphatidylinositol glycan anchor biosynthesis, class B protein-coding PIGB phosphatidylinositol glycan anchor biosynthesis, class B O GPI mannosyltransferase 3|GPI mannosyltransferase III|phosphatidylinositol glycan, class B|phosphatidylinositol-glycan biosynthesis class B protein 20121230 -9606 9489 PGS1 - - HGNC:30029|MIM:614942|Ensembl:ENSG00000087157|HPRD:17841|Vega:OTTHUMG00000177514 17 17q25.3 phosphatidylglycerophosphate synthase 1 protein-coding PGS1 phosphatidylglycerophosphate synthase 1 O CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial|PGP synthase 1 20121230 -9606 9491 PSMF1 RP4-545L17.1 PI31 HGNC:9571|Ensembl:ENSG00000125818|HPRD:17919|Vega:OTTHUMG00000031656 20 20p13 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) protein-coding PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) O hPI31|proteasome inhibitor PI31 subunit|proteasome inhibitor hP131 subunit 20121230 -9606 9493 KIF23 - CHO1|KNSL5|MKLP-1|MKLP1 HGNC:6392|MIM:605064|Ensembl:ENSG00000137807|HPRD:05455|Vega:OTTHUMG00000172062 15 15q23 kinesin family member 23 protein-coding KIF23 kinesin family member 23 O kinesin-like 5 (mitotic kinesin-like protein 1)|kinesin-like protein 5|kinesin-like protein KIF23|mitotic kinesin-like 1|mitotic kinesin-like protein 1 20121230 -9606 9495 AKAP5 - AKAP75|AKAP79|H21 HGNC:375|MIM:604688|Ensembl:ENSG00000179841|HPRD:05255|Vega:OTTHUMG00000029634 14 14q23.3 A kinase (PRKA) anchor protein 5 protein-coding AKAP5 A kinase (PRKA) anchor protein 5 O A-kinase anchor protein 5|A-kinase anchor protein 79 kDa|A-kinase anchor protein, 79kDa|A-kinase anchoring protein 75/79|AKAP 79|AKAP-5|cAMP-dependent protein kinase regulatory subunit II high affinity binding protein|cAMP-dependent protein kinase regulatory subunit II high affinity-binding protein 20121230 -9606 9496 TBX4 - SPS HGNC:11603|MIM:601719|Ensembl:ENSG00000121075|HPRD:03424|Vega:OTTHUMG00000180078 17 17q21-q22 T-box 4 protein-coding TBX4 T-box 4 O T-box protein 4|T-box transcription factor TBX4 20121230 -9606 9497 SLC4A7 - NBC2|NBC3|NBCN1|SBC2|SLC4A6 HGNC:11033|MIM:603353|Ensembl:ENSG00000033867|HPRD:04521|Vega:OTTHUMG00000155679 3 3p22 solute carrier family 4, sodium bicarbonate cotransporter, member 7 protein-coding SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 O bicarbonate transporter|sodium bicarbonate cotransporter 2|sodium bicarbonate cotransporter 2b|sodium bicarbonate cotransporter 3|solute carrier family 4 member 7 20121230 -9606 9498 SLC4A8 - NBC3|NDCBE HGNC:11034|MIM:605024|Ensembl:ENSG00000050438|HPRD:05430|Vega:OTTHUMG00000169489 12 12q13.13 solute carrier family 4, sodium bicarbonate cotransporter, member 8 protein-coding SLC4A8 solute carrier family 4, sodium bicarbonate cotransporter, member 8 O electroneutral Na(+)-driven Cl-HCO3 exchanger|electroneutral sodium bicarbonate exchanger 1|k-NBC3 20121230 -9606 9499 MYOT - LGMD1|LGMD1A|TTID HGNC:12399|MIM:604103|Ensembl:ENSG00000120729|HPRD:04981|Vega:OTTHUMG00000129154 5 5q31 myotilin protein-coding MYOT myotilin O 57 kDa cytoskeletal protein|myofibrillar titin-like Ig domains protein|titin immunoglobulin domain protein (myotilin) 20121230 -9606 9500 MAGED1 PRO2292 DLXIN-1|NRAGE HGNC:6813|MIM:300224|Ensembl:ENSG00000179222|HPRD:02202|Vega:OTTHUMG00000021540 X Xp11.23 melanoma antigen family D, 1 protein-coding MAGED1 melanoma antigen family D, 1 O MAGE tumor antigen CCF|MAGE-D1 antigen|melanoma-associated antigen D1|neurotrophin receptor-interacting MAGE homolog 20121230 -9606 9501 RPH3AL - NOC2 HGNC:10296|MIM:604881|Ensembl:ENSG00000181031|HPRD:05345|Vega:OTTHUMG00000090273 17 17p13.3 rabphilin 3A-like (without C2 domains) protein-coding RPH3AL rabphilin 3A-like (without C2 domains) O no C2 domains protein|rab effector Noc2 20121230 -9606 9502 XAGE2 - CT12.2|GAGED3|XAGE-2 HGNC:4112|MIM:300416|Ensembl:ENSG00000155622|HPRD:02332|Vega:OTTHUMG00000021549 X Xp11.22 X antigen family, member 2 protein-coding XAGE2 X antigen family, member 2 O G antigen family D member 3|G antigen, family D, 3|cancer/testis antigen 12.2|cancer/testis antigen family 12, member 2|protein XAGE-2 20121230 -9606 9503 XAGE1D - CT12.1|CT12.1D|CTP9 HGNC:21508|MIM:300289|Ensembl:ENSG00000204376|HPRD:02241|Vega:OTTHUMG00000021568 X Xp11.22 X antigen family, member 1D protein-coding XAGE1D X antigen family, member 1D O G antigen family D member 2|cancer/testis antigen 12.1|cancer/testis antigen family 12, member 1d|cancer/testis associated protein|protein XAGE-1 20121230 -9606 9506 PAGE4 JM27 CT16.7|GAGE-9|GAGEC1|JM-27|PAGE-1|PAGE-4 HGNC:4108|MIM:300287|Ensembl:ENSG00000101951|HPRD:02239|Vega:OTTHUMG00000024155 X Xp11.23 P antigen family, member 4 (prostate associated) protein-coding PAGE4 P antigen family, member 4 (prostate associated) O G antigen family C member 1|G antigen, family C, 1|prostate-associated gene 4 protein|prostate-associated gene protein 4 20121230 -9606 9507 ADAMTS4 UNQ769/PRO1563 ADAMTS-2|ADAMTS-4|ADMP-1 HGNC:220|MIM:603876|Ensembl:ENSG00000158859|HPRD:04853|Vega:OTTHUMG00000034349 1 1q21-q23 ADAM metallopeptidase with thrombospondin type 1 motif, 4 protein-coding ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 O A disintegrin and metalloproteinase with thrombospondin motifs 4|ADAM-TS 4|ADAM-TS4|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 4|aggrecanase-1 20121230 -9606 9508 ADAMTS3 - ADAMTS-4 HGNC:219|MIM:605011|Ensembl:ENSG00000156140|HPRD:06893|Vega:OTTHUMG00000129912 4 4q13.3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 protein-coding ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 O A disintegrin and metalloproteinase with thrombospondin motifs 3|ADAM-TS 3|ADAM-TS3|ADAMTS-3|PC II-NP|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3|procollagen II N-proteinase|procollagen II amino propeptide-processing enzyme|zinc metalloendopeptidase 20121230 -9606 9509 ADAMTS2 - ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI HGNC:218|MIM:604539|Ensembl:ENSG00000087116|HPRD:05173|Vega:OTTHUMG00000130915 5 5qter ADAM metallopeptidase with thrombospondin type 1 motif, 2 protein-coding ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 O A disintegrin and metalloproteinase with thrombospondin motifs 2|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2|procollagen I N-proteinase|procollagen I/II amino propeptide-processing enzyme|procollagen N-endopeptidase 20121230 -9606 9510 ADAMTS1 - C3-C5|METH1 HGNC:217|MIM:605174|Ensembl:ENSG00000154734|HPRD:05530|Vega:OTTHUMG00000078688 21 21q21.2 ADAM metallopeptidase with thrombospondin type 1 motif, 1 protein-coding ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 O A disintegrin and metalloproteinase with thrombospondin motifs 1|ADAM-TS 1|ADAM-TS1|ADAMTS-1|METH-1|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1|human metalloproteinase with thrombospondin type 1 motifs 20121230 -9606 9512 PMPCB - Beta-MPP|MPP11|MPPB|MPPP52|P-52 HGNC:9119|MIM:603131|Ensembl:ENSG00000105819|HPRD:07539|Vega:OTTHUMG00000157205 7 7q22.1 peptidase (mitochondrial processing) beta protein-coding PMPCB peptidase (mitochondrial processing) beta O mitochondrial processing peptidase beta subunit|mitochondrial-processing peptidase subunit beta 20121230 -9606 9513 FXR2 - FMR1L2|FXR2P HGNC:4024|MIM:605339|Ensembl:ENSG00000129245|HPRD:05629|Vega:OTTHUMG00000178237 17 17p13.1 fragile X mental retardation, autosomal homolog 2 protein-coding FXR2 fragile X mental retardation, autosomal homolog 2 O fragile X mental retardation syndrome-related protein 2|fragile X-mental retardation 1-like 2 20121230 -9606 9514 GAL3ST1 - CST HGNC:24240|MIM:602300|Ensembl:ENSG00000128242|HPRD:03806|Vega:OTTHUMG00000151200 22 22q12.2 galactose-3-O-sulfotransferase 1 protein-coding GAL3ST1 galactose-3-O-sulfotransferase 1 O 3'-phosphoadenosine-5'-phosphosulfate:GalCer sulfotransferase|3'-phosphoadenylylsulfate:galactosylceramide 3'-sulfotransferase|GalCer sulfotransferase|cerebroside (3'-phosphoadenylylsulfate:galactosylceramide 3') sulfotransferase|cerebroside sulfotransferase|galactosylceramide sulfotransferase 20121230 -9606 9515 STXBP5L - LLGL4 HGNC:30757|MIM:609381|Ensembl:ENSG00000145087|Vega:OTTHUMG00000159426 3 3q13.33 syntaxin binding protein 5-like protein-coding STXBP5L syntaxin binding protein 5-like O lethal(2) giant larvae protein homolog 4|syntaxin-binding protein 5-like|tomosyn-2|tomosyn-like 20121230 -9606 9516 LITAF - PIG7|SIMPLE|TP53I7 HGNC:16841|MIM:603795|Ensembl:ENSG00000189067|HPRD:10354|Vega:OTTHUMG00000177415 16 16p13.13 lipopolysaccharide-induced TNF factor protein-coding LITAF lipopolysaccharide-induced TNF factor O LPS-induced TNF-alpha factor|lipopolysaccharide-induced TNF-alpha factor|lipopolysaccharide-induced tumor necrosis factor-alpha factor|p53-induced gene 7 protein|small integral membrane protein of lysosome/late endosome|tumor protein p53 inducible protein 7 20121230 -9606 9517 SPTLC2 - HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a HGNC:11278|MIM:605713|Ensembl:ENSG00000100596|HPRD:05755|Vega:OTTHUMG00000171540 14 14q24.3 serine palmitoyltransferase, long chain base subunit 2 protein-coding SPTLC2 serine palmitoyltransferase, long chain base subunit 2 O LCB 2|SPT 2|long chain base biosynthesis protein 2a|serine palmitoyltransferase 2|serine palmitoyltransferase, subunit II|serine-palmitoyl-CoA transferase 2 20121230 -9606 9518 GDF15 - GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB HGNC:30142|MIM:605312|Ensembl:ENSG00000130513|HPRD:05608 19 19p13.11 growth differentiation factor 15 protein-coding GDF15 growth differentiation factor 15 O NRG-1|NSAID (nonsteroidal anti-inflammatory drug)-activated protein 1|NSAID-activated gene 1 protein|NSAID-regulated gene 1 protein|PTGF-beta|growth/differentiation factor 15|macrophage inhibitory cytokine 1|placental TGF-beta|placental bone morphogenetic protein|prostate differentiation factor 20121230 -9606 9519 TBPL1 RP1-73H22.1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 HGNC:11589|MIM:605521|Ensembl:ENSG00000028839|HPRD:09272|Vega:OTTHUMG00000015609 6 6q22.1-q22.3 TBP-like 1 protein-coding TBPL1 TBP-like 1 O 21-kDA TBP-like protein|TATA box-binding protein-like protein 1|TATA box-binding protein-related factor 2|TBP-related factor 2|TBP-related protein|second TBP of unique DNA protein 20121230 -9606 9520 NPEPPS - AAP-S|MP100|PSA HGNC:7900|MIM:606793|Ensembl:ENSG00000141279|HPRD:07366|Vega:OTTHUMG00000165471 17 17q21 aminopeptidase puromycin sensitive protein-coding NPEPPS aminopeptidase puromycin sensitive O cytosol alanyl aminopeptidase|metalloproteinase MP100|puromycin-sensitive aminopeptidase 20121230 -9606 9521 EEF1E1 RP3-511E16.1 AIMP3|P18 HGNC:3212|MIM:609206|Ensembl:ENSG00000124802|HPRD:10931|Vega:OTTHUMG00000014221 6 6p24.3 eukaryotic translation elongation factor 1 epsilon 1 protein-coding EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 O ARS-interacting multifunctional protein 3|aminoacyl tRNA synthetase complex-interacting multifunctional protein 3|eukaryotic translation elongation factor 1 epsilon-1|multisynthase complex auxiliary component p18|p18 component of aminoacyl-tRNA synthetase complex 20121230 -9606 9522 SCAMP1 - SCAMP|SCAMP37 HGNC:10563|MIM:606911|HPRD:06072 5 5q14.1 secretory carrier membrane protein 1 protein-coding SCAMP1 secretory carrier membrane protein 1 O secretory carrier-associated membrane protein 1 20121230 -9606 9524 TECR - GPSN2|MRT14|SC2|TER HGNC:4551|MIM:610057|Ensembl:ENSG00000099797|HPRD:17076 19 19p13.12 trans-2,3-enoyl-CoA reductase protein-coding TECR trans-2,3-enoyl-CoA reductase O glycoprotein, synaptic 2|synaptic glycoprotein SC2 20121230 -9606 9525 VPS4B MIG1 SKD1|SKD1B|VPS4-2 HGNC:10895|MIM:609983|Ensembl:ENSG00000119541|HPRD:15653|Vega:OTTHUMG00000132790 18 18q21.33 vacuolar protein sorting 4 homolog B (S. cerevisiae) protein-coding VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) O cell migration-inducing 1|cell migration-inducing gene 1 protein|suppressor of K(+) transport growth defect 1|suppressor of K+ transport defect 1|vacuolar protein sorting 4B|vacuolar protein sorting-associated protein 4B 20121230 -9606 9526 MPDU1 - CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15 HGNC:7207|MIM:604041|Ensembl:ENSG00000129255|HPRD:04951|Vega:OTTHUMG00000108147 17 17p13.1-p12 mannose-P-dolichol utilization defect 1 protein-coding MPDU1 mannose-P-dolichol utilization defect 1 O HBeAg-binding protein 2 binding protein A|mannose-P-dolichol utilization defect 1 protein|suppressor of Lec15 and Lec35 glycosylation mutation homolog 20121230 -9606 9527 GOSR1 - GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 HGNC:4430|MIM:604026|Ensembl:ENSG00000108587|Vega:OTTHUMG00000132796 17 17q11 golgi SNAP receptor complex member 1 protein-coding GOSR1 golgi SNAP receptor complex member 1 O 28 kDa Golgi SNARE protein|28 kDa cis-Golgi SNARE p28|Golgi SNAP receptor complex member 1|Golgi SNARE 28 kDa|cis-golgi SNARE|golgi integral membrane protein 2 20121230 -9606 9528 TMEM59 RP4-758J24.2 C1orf8|HSPC001 HGNC:1239|Ensembl:ENSG00000116209|HPRD:12731|Vega:OTTHUMG00000008437 1 1p32.3 transmembrane protein 59 protein-coding TMEM59 transmembrane protein 59 O liver membrane-bound protein 20121230 -9606 9529 BAG5 - BAG-5 HGNC:941|MIM:603885|Ensembl:ENSG00000166170|HPRD:04862|Vega:OTTHUMG00000171763 14 14q32.33 BCL2-associated athanogene 5 protein-coding BAG5 BCL2-associated athanogene 5 O BAG family molecular chaperone regulator 5|BAG-family molecular chaperone regulator-5|bcl-2-associated athanogene 5 20121230 -9606 9530 BAG4 - BAG-4|SODD HGNC:940|MIM:603884|Ensembl:ENSG00000156735|HPRD:04861|Vega:OTTHUMG00000164064 8 8p11.23 BCL2-associated athanogene 4 protein-coding BAG4 BCL2-associated athanogene 4 O BAG family molecular chaperone regulator 4|BAG-family molecular chaperone regulator-4|bcl-2-associated athanogene 4|silencer of death domains 20121230 -9606 9531 BAG3 - BAG-3|BIS|CAIR-1 HGNC:939|MIM:603883|Ensembl:ENSG00000151929|HPRD:04860|Vega:OTTHUMG00000019155 10 10q25.2-q26.2 BCL2-associated athanogene 3 protein-coding BAG3 BCL2-associated athanogene 3 O BAG family molecular chaperone regulator 3|BAG-family molecular chaperone regulator-3|BCL2-binding athanogene 3|bcl-2-associated athanogene 3|bcl-2-binding protein Bis|docking protein CAIR-1 20121230 -9606 9532 BAG2 RP3-496N17.2 BAG-2|dJ417I1.2 HGNC:938|MIM:603882|Ensembl:ENSG00000112208|HPRD:04859|Vega:OTTHUMG00000014919 6 6p12.1-p11.2 BCL2-associated athanogene 2 protein-coding BAG2 BCL2-associated athanogene 2 O BAG family molecular chaperone regulator 2|BAG-family molecular chaperone regulator-2|bcl-2-associated athanogene 2|dJ417I1.2 (BAG-family molecular chaperone regulator 2) 20121230 -9606 9533 POLR1C RP3-337H4.4 RPA39|RPA40|RPA5|RPAC1|TCS3 HGNC:20194|MIM:610060|Ensembl:ENSG00000171453|HPRD:09661|Vega:OTTHUMG00000014739 6 6p21.1 polymerase (RNA) I polypeptide C, 30kDa protein-coding POLR1C polymerase (RNA) I polypeptide C, 30kDa O AC40|DNA-directed RNA polymerase I subunit C|DNA-directed RNA polymerases I and III 40 kDa polypeptide|DNA-directed RNA polymerases I and III subunit RPAC1|RNA polymerases I and III subunit AC1|RPC40 20121230 -9606 9534 ZNF254 - BMZF-5|HD-ZNF1|ZNF539|ZNF91L HGNC:13047|MIM:604768|Ensembl:ENSG00000213096|HPRD:05304|HPRD:15826 19 19p12 zinc finger protein 254 protein-coding ZNF254 zinc finger protein 254 O bone marrow zinc finger 5|hematopoietic cell-derived zinc finger protein 1|hematopoietic-derived zinc finger protein|zinc finger protein 539 20121230 -9606 9535 GMFG - GMF-GAMMA HGNC:4374|MIM:604104|Ensembl:ENSG00000130755|HPRD:06821 19 19q13.2 glia maturation factor, gamma protein-coding GMFG glia maturation factor, gamma O glia maturation factor gamma 20121230 -9606 9536 PTGES - MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 HGNC:9599|MIM:605172|Ensembl:ENSG00000148344|HPRD:05528|Vega:OTTHUMG00000020791 9 9q34.3 prostaglandin E synthase protein-coding PTGES prostaglandin E synthase O MGST1-like 1|glutathione S-transferase 1-like 1|microsomal glutathione S-transferase 1-like 1|microsomal prostaglandin E synthase 1|microsomal prostaglandin E synthase-1|p53-induced apoptosis protein 12|p53-induced gene 12 protein|tumor protein p53 inducible protein 12 20121230 -9606 9537 TP53I11 - PIG11 HGNC:16842|Ensembl:ENSG00000175274|HPRD:15545|Vega:OTTHUMG00000165714 11 11p11.2 tumor protein p53 inducible protein 11 protein-coding TP53I11 tumor protein p53 inducible protein 11 O p53-induced gene 11 protein|tumor protein p53-inducible protein 11 20121230 -9606 9538 EI24 - EPG4|PIG8|TP53I8 HGNC:13276|MIM:605170|Ensembl:ENSG00000149547|HPRD:05526|Vega:OTTHUMG00000165851 11 11q24 etoposide induced 2.4 protein-coding EI24 etoposide induced 2.4 O ectopic P-granules autophagy protein 4 homolog|etoposide induced 2.4 mRNA|etoposide-induced protein 2.4 homolog|p53-induced gene 8 protein|tumor protein p53 inducible protein 8 20121230 -9606 9540 TP53I3 - PIG3 HGNC:19373|MIM:605171|Ensembl:ENSG00000115129|HPRD:05527|Vega:OTTHUMG00000090817 2 2p23.3 tumor protein p53 inducible protein 3 protein-coding TP53I3 tumor protein p53 inducible protein 3 O p53-induced gene 3 protein|quinone oxidoreductase PIG3|quinone oxidoreductase homolog 20121230 -9606 9541 CIR1 - CIR HGNC:24217|MIM:605228|Ensembl:ENSG00000138433|HPRD:05568|Vega:OTTHUMG00000132338 2 2q31.1 corepressor interacting with RBPJ, 1 protein-coding CIR1 corepressor interacting with RBPJ, 1 O CBF1 interacting corepressor|CBF1-interacting corepressor|corepressor interacting with RBPJ 1|recepin 20121230 -9606 9542 NRG2 - DON1|HRG2|NTAK HGNC:7998|MIM:603818|Ensembl:ENSG00000158458|HPRD:04821|Vega:OTTHUMG00000129241 5 5q23-q33 neuregulin 2 protein-coding NRG2 neuregulin 2 O divergent of neuregulin-1|neural- and thymus-derived activator for ErbB kinases|pro-NRG2|pro-neuregulin-2, membrane-bound isoform 20121230 -9606 9543 IGDCC3 - HsT18880|PUNC HGNC:9700|MIM:604184|Ensembl:ENSG00000174498|HPRD:09169|Vega:OTTHUMG00000133137 15 15q22.3-q23 immunoglobulin superfamily, DCC subclass, member 3 protein-coding IGDCC3 immunoglobulin superfamily, DCC subclass, member 3 O immunoglobulin superfamily DCC subclass member 3|putative neuronal cell adhesion molecule 20121230 -9606 9545 RAB3D - D2-2|GOV|RAB16|RAD3D HGNC:9779|MIM:604350|Ensembl:ENSG00000105514|HPRD:05070|Vega:OTTHUMG00000180835 19 19p13.2 RAB3D, member RAS oncogene family protein-coding RAB3D RAB3D, member RAS oncogene family O Rab3D upregulated with myeloid differentiation|glioblastoma overexpressed|ras-related protein Rab-3D 20121230 -9606 9546 APBA3 - MGC:15815|X11L2|mint3 HGNC:580|MIM:604262|Ensembl:ENSG00000011132|HPRD:05038|Vega:OTTHUMG00000180915 19 19p13.3 amyloid beta (A4) precursor protein-binding, family A, member 3 protein-coding APBA3 amyloid beta (A4) precursor protein-binding, family A, member 3 O X11-like 2 protein|adapter protein X11gamma|amyloid beta (A4) precursor protein-binding, family A, member 3 (X11-like 2)|amyloid beta A4 precursor protein-binding family A member 3|mint-3|neuron-specific X11L2 protein|neuronal munc18-1-interacting protein 3|phosphotyrosine-binding/-interacting domain (PTB)-bearing protein 20121230 -9606 9547 CXCL14 UNQ240/PRO273 BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14 HGNC:10640|MIM:604186|Ensembl:ENSG00000145824|HPRD:16049|Vega:OTTHUMG00000129139 5 5q31 chemokine (C-X-C motif) ligand 14 protein-coding CXCL14 chemokine (C-X-C motif) ligand 14 O C-X-C motif chemokine 14|CXC chemokine in breast and kidney|MIP-2 gamma|bolekine|breast and kidney|chemokine BRAK|small inducible cytokine subfamily B (Cys-X-Cys), member 14 (BRAK)|small-inducible cytokine B14|tumor-suppressing chemokine 20121230 -9606 9550 ATP6V1G1 RP11-402G3.1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 HGNC:864|MIM:607296|Ensembl:ENSG00000136888|HPRD:06294|Vega:OTTHUMG00000021023 9 9q32 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 protein-coding ATP6V1G1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 O ATPase, H+ transporting, lysosomal (vacuolar proton pump), member J|V-ATPase 13 kDa subunit 1|V-ATPase subunit G 1|V-type proton ATPase subunit G 1|vacuolar ATP synthase subunit M16|vacuolar H(+)-ATPase subunit G 1|vacuolar proton pump subunit G 1|vacuolar proton pump subunit M16 20121230 -9606 9551 ATP5J2 - ATP5JL HGNC:848|Ensembl:ENSG00000241468|HPRD:16520|Vega:OTTHUMG00000154609 7 7q22.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 protein-coding ATP5J2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 O ATP synthase f chain, mitochondrial|ATP synthase subunit f, mitochondrial|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f|F1F0-type ATPase subunit f|F1Fo-ATP synthase complex Fo membrane domain f subunit|F1Fo-ATPase synthase f subunit 20121230 -9606 9552 SPAG7 - ACRP|FSA-1 HGNC:11216|MIM:610056|Ensembl:ENSG00000091640|HPRD:10247|Vega:OTTHUMG00000177733 17 17p13.2 sperm associated antigen 7 protein-coding SPAG7 sperm associated antigen 7 O sperm-associated antigen 7 20121230 -9606 9553 MRPL33 - C2orf1|L33mt|MRP-L33|RPL33L HGNC:14487|MIM:610059|Ensembl:ENSG00000243147|HPRD:14753|Vega:OTTHUMG00000097795 2 2p21 mitochondrial ribosomal protein L33 protein-coding MRPL33 mitochondrial ribosomal protein L33 O 39S ribosomal protein L33, mitochondrial 20121230 -9606 9554 SEC22B - ERS-24|SEC22L1 HGNC:10700|MIM:604029|HPRD:04939 1 1q21.1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding SEC22B SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) O ER-Golgi SNARE of 24 kDa|SEC22 vesicle trafficking protein-like 1|SEC22 vesicle-trafficking protein homolog B|vesicle-trafficking protein SEC22b 20121230 -9606 9555 H2AFY - H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2 HGNC:4740|MIM:610054|Ensembl:ENSG00000113648|HPRD:13624|Vega:OTTHUMG00000129141 5 5q31.1 H2A histone family, member Y protein-coding H2AFY H2A histone family, member Y O core histone macro-H2A.1|histone H2A.y|histone macroH2A1|histone macroH2A1.1|histone macroH2A1.2|medulloblastoma antigen MU-MB-50.205 20121230 -9606 9556 C14orf2 PRO1574 MP68|PLPM HGNC:1188|MIM:604573|Ensembl:ENSG00000156411|HPRD:05199|Vega:OTTHUMG00000171601 14 14q32.33 chromosome 14 open reading frame 2 protein-coding C14orf2 chromosome 14 open reading frame 2 O 6.8 kDa mitochondrial proteolipid 20121230 -9606 9557 CHD1L - ALC1|CHDL HGNC:1916|MIM:613039|Ensembl:ENSG00000131778|HPRD:09880|Vega:OTTHUMG00000150271 1 1q12 chromodomain helicase DNA binding protein 1-like protein-coding CHD1L chromodomain helicase DNA binding protein 1-like O amplified in liver cancer 1|amplified in liver cancer protein 1|chromodomain-helicase-DNA-binding protein 1-like 20121230 -9606 9559 VPS26A - HB58|Hbeta58|PEP8A|VPS26 HGNC:12711|MIM:605506|Ensembl:ENSG00000122958|HPRD:08385|Vega:OTTHUMG00000018376 10 10q21.1 vacuolar protein sorting 26 homolog A (S. pombe) protein-coding VPS26A vacuolar protein sorting 26 homolog A (S. pombe) O vacuolar protein sorting-associated protein 26A|vesicle protein sorting 26A 20121230 -9606 9560 CCL4L1 - AT744.2|CCL4L|LAG-1|LAG1|SCYA4L HGNC:10631|MIM:603782|Ensembl:ENSG00000205020|HPRD:16030|Vega:OTTHUMG00000180296 17 17q12 chemokine (C-C motif) ligand 4-like 1 protein-coding CCL4L1 chemokine (C-C motif) ligand 4-like 1 O C-C motif chemokine 4-like|MIP-1-beta|lymphocyte activation gene 1 protein|macrophage inflammatory protein 1-beta|macrophage inflammatory protein-1b2|monocyte adherence-induced protein 5-alpha 20121230 -9606 9562 MINPP1 RP11-57C13.1 HIPER1|MINPP2|MIPP HGNC:7102|MIM:605391|Ensembl:ENSG00000107789|HPRD:05652|Vega:OTTHUMG00000018678 10 10q23 multiple inositol-polyphosphate phosphatase 1 protein-coding MINPP1 multiple inositol-polyphosphate phosphatase 1 O 2,3-BPG phosphatase|2,3-bisphosphoglycerate 3-phosphatase|inositol (1,3,4,5)-tetrakisphosphate 3-phosphatase|ins(1,3,4,5)P(4) 3-phosphatase|multiple inositol polyphosphate histidine phosphatase, 1|multiple inositol polyphosphate phosphatase 1|multiple inositol polyphosphate phosphatase 2 20121230 -9606 9563 H6PD RP3-510D11.3 CORTRD1|G6PDH|GDH HGNC:4795|MIM:138090|Ensembl:ENSG00000049239|HPRD:00681|Vega:OTTHUMG00000001768 1 1p36 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) protein-coding H6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) O 6-phosphogluconolactonase|G6PD, H form|GDH/6PGL endoplasmic bifunctional protein|glucose 1- dehydrogenase|glucose dehydrogenase|glucose dehyrogenase|glucose-6-phosphate dehydrogenase, salivary 20121230 -9606 9564 BCAR1 hCG_1980470 CAS|CAS1|CASS1|CRKAS|P130Cas HGNC:971|MIM:602941|Ensembl:ENSG00000050820|HPRD:04248|Vega:OTTHUMG00000137604 16 16q23.1 breast cancer anti-estrogen resistance 1 protein-coding BCAR1 breast cancer anti-estrogen resistance 1 O Cas scaffolding protein family member 1|Crk-associated substrate p130Cas|breast cancer anti-estrogen resistance protein 1 20121230 -9606 9566 HPCX - - HGNC:5146|MIM:300147 X Xq27-q28 hereditary prostate cancer, X-linked unknown HPCX hereditary prostate cancer, X-linked O - 20120622 -9606 9567 GTPBP1 RP3-508I15.1 GP-1|GP1|HSPC018 HGNC:4669|MIM:602245|Ensembl:ENSG00000100226|HPRD:03765|Vega:OTTHUMG00000151002 22 22q13.1 GTP binding protein 1 protein-coding GTPBP1 GTP binding protein 1 O G-protein 1|GTP-binding protein 1 20121230 -9606 9568 GABBR2 - GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099 HGNC:4507|MIM:607340|Ensembl:ENSG00000136928|HPRD:09552|Vega:OTTHUMG00000020345 9 9q22.1-q22.3 gamma-aminobutyric acid (GABA) B receptor, 2 protein-coding GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 O G protein-coupled receptor 51|G-protein coupled receptor 51|GABA-B receptor 2|GABA-B receptor, R2 subunit|GABA-B-R2|GABA-BR2|gamma-aminobutyric acid B receptor 2|gamma-aminobutyric acid type B receptor subunit 2|gb2 20121230 -9606 9569 GTF2IRD1 - BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 HGNC:4661|MIM:604318|Ensembl:ENSG00000006704|HPRD:08379|Vega:OTTHUMG00000023782 7 7q11.23 GTF2I repeat domain containing 1 protein-coding GTF2IRD1 GTF2I repeat domain containing 1 O USE B1-binding protein|Williams-Beuren syndrome chromosome region 11|binding factor for early enhancer|general transcription factor 3|general transcription factor II-I repeat domain-containing protein 1|general transcription factor III|muscle TFII-I repeat domain-containing protein 1 alpha 1|slow-muscle-fiber enhancer-binding protein|williams-Beuren syndrome chromosomal region 12 protein 20121230 -9606 9570 GOSR2 - Bos1|EPM6|GS27 HGNC:4431|MIM:604027|Ensembl:ENSG00000108433|HPRD:04937|Vega:OTTHUMG00000178080 17 17q21 golgi SNAP receptor complex member 2 protein-coding GOSR2 golgi SNAP receptor complex member 2 O 27 kDa Golgi SNARE protein|Golgi SNAP receptor complex member 2|membrin 20121230 -9606 9572 NR1D1 - EAR1|THRA1|THRAL|ear-1|hRev HGNC:7962|MIM:602408|Ensembl:ENSG00000126368|HPRD:03873|Vega:OTTHUMG00000133327 17 17q11.2 nuclear receptor subfamily 1, group D, member 1 protein-coding NR1D1 nuclear receptor subfamily 1, group D, member 1 O Rev-ErbAalpha|V-erbA-related protein 1|nuclear receptor Rev-ErbA-alpha|nuclear receptor subfamily 1 group D member 1|rev-erbA-alpha 20121230 -9606 9573 GDF3 UNQ222/PRO248 KFS3|MCOP7|MCOPCB6 HGNC:4218|MIM:606522|Ensembl:ENSG00000184344|HPRD:05938|Vega:OTTHUMG00000168433 12 12p13.1 growth differentiation factor 3 protein-coding GDF3 growth differentiation factor 3 O GDF-3|growth/differentiation factor 3 20121230 -9606 9575 CLOCK - KAT13D|bHLHe8 HGNC:2082|MIM:601851|Ensembl:ENSG00000134852|HPRD:03508|Vega:OTTHUMG00000102141 4 4q12 clock circadian regulator protein-coding CLOCK clock circadian regulator O circadian locomoter output cycles kaput protein|circadian locomoter output cycles protein kaput|class E basic helix-loop-helix protein 8|clock homolog 20121230 -9606 9576 SPAG6 RP11-301N24.4 Repro-SA-1|pf16 HGNC:11215|MIM:605730|Ensembl:ENSG00000077327|HPRD:09305|Vega:OTTHUMG00000017808 10 10p12.2 sperm associated antigen 6 protein-coding SPAG6 sperm associated antigen 6 O axoneme central apparatus protein|protein PF16 homolog|sperm flagellar protein|sperm-associated antigen 6 20121230 -9606 9577 BRE - BRCC4|BRCC45 HGNC:1106|MIM:610497|Ensembl:ENSG00000158019|HPRD:08498|Vega:OTTHUMG00000097831 2 2p23.2 brain and reproductive organ-expressed (TNFRSF1A modulator) protein-coding BRE brain and reproductive organ-expressed (TNFRSF1A modulator) O BRCA1-A complex subunit BRE|BRCA1/BRCA2-containing complex subunit 45|BRCA1/BRCA2-containing complex, subunit 4|brain and reproductive organ-expressed protein 20121230 -9606 9578 CDC42BPB - MRCKB HGNC:1738|MIM:614062|Ensembl:ENSG00000198752|HPRD:08516|Vega:OTTHUMG00000171898 14 14q32.3 CDC42 binding protein kinase beta (DMPK-like) protein-coding CDC42BPB CDC42 binding protein kinase beta (DMPK-like) O CDC42-binding protein kinase beta (DMPK-like)|CDC42BP-beta|DMPK-like beta|MRCK beta|myotonic dystrophy kinase-related CDC42-binding kinase beta|myotonic dystrophy protein kinase-like beta|serine/threonine-protein kinase MRCK beta 20121230 -9606 9580 SOX13 RP11-74C13.1 ICA12|Sox-13 HGNC:11192|MIM:604748|Ensembl:ENSG00000143842|Vega:OTTHUMG00000036050 1 1q32 SRY (sex determining region Y)-box 13 protein-coding SOX13 SRY (sex determining region Y)-box 13 O SRY-box 13|SRY-related HMG-box gene 13|islet cell antibody 12|islet cell antigen 12|transcription factor SOX-13|type 1 diabetes autoantigen ICA12 20121230 -9606 9581 PREPL - - HGNC:30228|MIM:609557|Ensembl:ENSG00000138078|HPRD:17189|Vega:OTTHUMG00000152791 2 2p21 prolyl endopeptidase-like protein-coding PREPL prolyl endopeptidase-like O putative prolyl oligopeptidase 20121230 -9606 9582 APOBEC3B CTA-150C2.15-003 APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 HGNC:17352|MIM:607110|Ensembl:ENSG00000179750|HPRD:06169|Vega:OTTHUMG00000151085 22 22q13.1-q13.2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B protein-coding APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B O cytidine deaminase|phorbolin 2|phorbolin 3|phorbolin-1-related protein|phorbolin-2/3|probable DNA dC->dU-editing enzyme APOBEC-3B 20121230 -9606 9583 ENTPD4 - LALP70|LAP70|LYSAL1|NTPDase-4|UDPase HGNC:14573|MIM:607577|Ensembl:ENSG00000197217|HPRD:09618|Vega:OTTHUMG00000097852 8 8p21.3 ectonucleoside triphosphate diphosphohydrolase 4 protein-coding ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 O golgi luminal UDPase|guanosine-diphosphatase like protein|lysosomal apyrase-like 1|lysosomal apyrase-like protein of 70 kDa|uridine-diphosphatase 20121230 -9606 9584 RBM39 RP11-353C18.2 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 HGNC:15923|MIM:604739|Ensembl:ENSG00000131051|HPRD:09201|Vega:OTTHUMG00000032358 20 20q11.22 RNA binding motif protein 39 protein-coding RBM39 RNA binding motif protein 39 O RNA-binding protein 39|RNA-binding region (RNP1, RRM) containing 2|coactivator of activating protein-1 and estrogen receptors|functional spliceosome-associated protein 59|hepatocellular carcinoma protein 1|splicing factor HCC1 20121230 -9606 9585 KIF20B - CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 HGNC:7212|MIM:605498|Ensembl:ENSG00000138182|HPRD:09268|Vega:OTTHUMG00000018725 10 10q23.31 kinesin family member 20B protein-coding KIF20B kinesin family member 20B O M-phase phosphoprotein 1|cancer/testis antigen 90|kinesin-like protein KIF20B|kinesin-related motor interacting with PIN1|mitotic kinesin-like protein 20121230 -9606 9586 CREB5 - CRE-BPA HGNC:16844|Ensembl:ENSG00000146592|HPRD:09896|Vega:OTTHUMG00000097081 7 7p15.1 cAMP responsive element binding protein 5 protein-coding CREB5 cAMP responsive element binding protein 5 O CREB-5|H_GS165L15.1|cAMP response element binding protein CRE-Bpa|cAMP response element-binding protein CRE-BPa|cAMP responsive element binding protein 5 isoform alpha|cAMP-responsive element-binding protein 5|cyclic AMP-responsive element-binding protein 5 20121230 -9606 9587 MAD2L1BP - CMT2|RP1-261G23.6 HGNC:21059|Ensembl:ENSG00000124688|HPRD:10065|Vega:OTTHUMG00000014747 6 6p21.1 MAD2L1 binding protein protein-coding MAD2L1BP MAD2L1 binding protein O MAD2L1-binding protein|caught by MAD2 protein 20121230 -9606 9588 PRDX6 - 1-Cys|AOP2|NSGPx|PRX|aiPLA2|p29 HGNC:16753|MIM:602316|Ensembl:ENSG00000117592|HPRD:03817|Vega:OTTHUMG00000034804 1 1q25.1 peroxiredoxin 6 protein-coding PRDX6 peroxiredoxin 6 O 1-Cys PRX|1-Cys peroxiredoxin|24 kDa protein|acidic calcium-independent phospholipase A2|antioxidant protein 2|liver 2D page spot 40|non-selenium glutathione peroxidase|peroxiredoxin-6|red blood cells page spot 12 20121230 -9606 9589 WTAP RP1-56L9.4 - HGNC:16846|MIM:605442|Ensembl:ENSG00000146457|HPRD:09259|Vega:OTTHUMG00000015933 6 6q25-q27 Wilms tumor 1 associated protein protein-coding WTAP Wilms tumor 1 associated protein O PNAS-132|WT1-associated protein|Wilms' tumour 1-associating protein|female-lethal(2)D homolog|hFL(2)D|pre-mRNA-splicing regulator WTAP|putative pre-mRNA splicing regulator female-lethal(2D)|wilms tumor 1-associating protein 20121230 -9606 9590 AKAP12 - AKAP250|SSeCKS HGNC:370|MIM:604698|Ensembl:ENSG00000131016|HPRD:05263|Vega:OTTHUMG00000015833 6 6q24-q25 A kinase (PRKA) anchor protein 12 protein-coding AKAP12 A kinase (PRKA) anchor protein 12 O A-kinase anchor protein 12|A-kinase anchor protein, 250kDa|AKAP 250|Src-Suppressed C Kinase Substrate|kinase scaffold protein gravin|myasthenia gravis autoantigen gravin 20121230 -9606 9592 IER2 - ETR101 HGNC:28871|Ensembl:ENSG00000160888|HPRD:09997|Vega:OTTHUMG00000180790 19 19p13.2 immediate early response 2 protein-coding IER2 immediate early response 2 O immediate early response gene 2 protein 20121230 -9606 9595 CYTIP - B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP HGNC:9506|MIM:604448|Ensembl:ENSG00000115165|HPRD:09192|Vega:OTTHUMG00000154551 2 2q11.2 cytohesin 1 interacting protein protein-coding CYTIP cytohesin 1 interacting protein O cbp HE|cytohesin binder and regulator|cytohesin binding protein HE|cytohesin-1 interacting protein|cytohesin-associated scaffolding protein|cytohesin-binding protein HE|cytohesin-interacting protein|pleckstrin homology Sec7 and coiled-coil domains-binding protein|pleckstrin homology, Sec7 and coiled-coil domains, binding protein|pleckstrin homology, Sec7 and coiled/coil domains, binding protein 20121230 -9606 9596 OR1R1P - OR17-01|OR17-1|OR1R2P|OR1R3P|OR20A1P HGNC:8226 17 17p13.3 olfactory receptor, family 1, subfamily R, member 1 pseudogene pseudo OR1R1P olfactory receptor, family 1, subfamily R, member 1 pseudogene O - 20121230 -9606 9597 SMAD5-AS1 - DAMS|SMAD5AS|SMAD5OS HGNC:30586|HPRD:09904 5 5q31.1 SMAD5 antisense RNA 1 miscRNA SMAD5-AS1 SMAD5 antisense RNA 1 O - 20121230 -9606 9600 PITPNM1 - DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9 HGNC:9003|MIM:608794|Ensembl:ENSG00000110697|HPRD:07497|Vega:OTTHUMG00000167675 11 11q13 phosphatidylinositol transfer protein, membrane-associated 1 protein-coding PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 O NIR-2|PITPnm 1|PYK2 N-terminal domain-interacting receptor 2|drosophila retinal degeneration B homolog|membrane-associated phosphatidylinositol transfer protein 1|retinal degeneration B alpha 1 20121230 -9606 9601 PDIA4 - ERP70|ERP72|ERp-72 HGNC:30167|Ensembl:ENSG00000155660|HPRD:06501|Vega:OTTHUMG00000150248 7 7q35 protein disulfide isomerase family A, member 4 protein-coding PDIA4 protein disulfide isomerase family A, member 4 O ER protein 70|ER protein 72|endoplasmic reticulum resident protein 70|endoplasmic reticulum resident protein 72|protein disulfide isomerase related protein (calcium-binding protein, intestinal-related)|protein disulfide isomerase-associated 4|protein disulfide-isomerase A4 20121230 -9606 9603 NFE2L3 - NRF3 HGNC:7783|MIM:604135|Ensembl:ENSG00000050344|HPRD:09162|Vega:OTTHUMG00000023882 7 7p15.2 nuclear factor (erythroid-derived 2)-like 3 protein-coding NFE2L3 nuclear factor (erythroid-derived 2)-like 3 O NF-E2-related factor 3|NFE2-related factor 3|nuclear factor erythroid 2-related factor 3|nuclear factor, erythroid derived 2, like 3|nuclear factor-erythroid 2 p45-related factor 3|nuclear factor-erythroid 2-related factor 3 20121230 -9606 9604 RNF14 HRIHFB2038 ARA54|HFB30|TRIAD2 HGNC:10058|MIM:605675|Ensembl:ENSG00000013561|HPRD:05745|Vega:OTTHUMG00000129660 5 5q23.3-q31.1 ring finger protein 14 protein-coding RNF14 ring finger protein 14 O E3 ubiquitin-protein ligase RNF14|androgen receptor associated protein 54|androgen receptor-associated protein 54 20121230 -9606 9605 VPS9D1 - ATP-BL|C16orf7 HGNC:13526|Ensembl:ENSG00000075399|HPRD:08508|Vega:OTTHUMG00000173219 16 16q24 VPS9 domain containing 1 protein-coding VPS9D1 VPS9 domain containing 1 O uncharacterized protein C16orf7 20121230 -9606 9607 CARTPT - CART HGNC:24323|MIM:602606|Ensembl:ENSG00000164326|HPRD:04006|Vega:OTTHUMG00000131261 5 5q13.2 CART prepropeptide protein-coding CARTPT CART prepropeptide O cocaine and amphetamine regulated transcript|cocaine- and amphetamine-regulated transcript protein 20121230 -9606 9609 RAB36 - - HGNC:9775|MIM:605662|Ensembl:ENSG00000100228|HPRD:05743|Vega:OTTHUMG00000150601 22 22q11.22 RAB36, member RAS oncogene family protein-coding RAB36 RAB36, member RAS oncogene family O ras-related protein Rab-36|small GTP-binding protein Rab36 20121230 -9606 9610 RIN1 - - HGNC:18749|MIM:605965|Ensembl:ENSG00000174791|HPRD:05813|Vega:OTTHUMG00000167085 11 11q13.2 Ras and Rab interactor 1 protein-coding RIN1 Ras and Rab interactor 1 O ras and Rab interactor 1|ras inhibitor 1|ras inhibitor JC99|ras inhibitor RIN1|ras interaction/interference protein 1 20121230 -9606 9611 NCOR1 - N-CoR|N-CoR1|TRAC1|hN-CoR HGNC:7672|MIM:600849|Ensembl:ENSG00000141027|HPRD:02911|Vega:OTTHUMG00000059309 17 17p11.2 nuclear receptor corepressor 1 protein-coding NCOR1 nuclear receptor corepressor 1 O nuclear receptor co-repressor 1|thyroid hormone- and retinoic acid receptor-associated corepressor 1 20121230 -9606 9612 NCOR2 - CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 HGNC:7673|MIM:600848|Ensembl:ENSG00000196498|HPRD:02910|Vega:OTTHUMG00000150455 12 12q24 nuclear receptor corepressor 2 protein-coding NCOR2 nuclear receptor corepressor 2 O CTG repeat protein 26|T3 receptor-associating factor|silencing mediator for retinoid and thyroid hormone receptors|thyroid-, retinoic-acid-receptor-associated corepressor 20121230 -9606 9615 GDA RP11-63P12.1 CYPIN|GUANASE|NEDASIN HGNC:4212|MIM:139260|Ensembl:ENSG00000119125|HPRD:08849|Vega:OTTHUMG00000020005 9 9q21.13 guanine deaminase protein-coding GDA guanine deaminase O GAH|cytoplasmic PSD95 interactor|guanine aminase|guanine aminohydrolase|p51-nedasin 20121230 -9606 9616 RNF7 - CKBBP1|ROC2|SAG HGNC:10070|MIM:603863|Ensembl:ENSG00000114125|HPRD:04840|Vega:OTTHUMG00000141305 3 3q22-q24 ring finger protein 7 protein-coding RNF7 ring finger protein 7 O CKII beta-binding protein 1|RING-box protein 2|rbx2|regulator of cullins 2|sensitive to apoptosis gene protein|sensitive to apoptosis, zinc RING finger protein SAG, regulator of cullins 2|zinc RING finger protein SAG 20121230 -9606 9617 MTRF1 RP11-74J13.3 MRF1|MTTRF1|RF1 HGNC:7469|MIM:604601|Ensembl:ENSG00000120662|HPRD:06855|Vega:OTTHUMG00000016790 13 13q14.1-q14.3 mitochondrial translational release factor 1 protein-coding MTRF1 mitochondrial translational release factor 1 O MRF-1|mitochontrial peptide chain release factor 1|mtRF-1|peptide chain release factor 1, mitochondrial 20121230 -9606 9618 TRAF4 - CART1|MLN62|RNF83 HGNC:12034|MIM:602464|Ensembl:ENSG00000076604|HPRD:03915|Vega:OTTHUMG00000132677 17 17q11-q12 TNF receptor-associated factor 4 protein-coding TRAF4 TNF receptor-associated factor 4 O MLN 62|RING finger protein 83|cysteine-rich domain associated with RING and Traf domains protein 1|cysteine-rich domain associated with ring and TRAF domain|malignant 62|metastatic lymph node gene 62 protein|tumor necrosis receptor-associated factor 4A 20121230 -9606 9619 ABCG1 - ABC8|WHITE1 HGNC:73|MIM:603076|Ensembl:ENSG00000160179|HPRD:04355|Vega:OTTHUMG00000086791 21 21q22.3 ATP-binding cassette, sub-family G (WHITE), member 1 protein-coding ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1 O ABC transporter 8|ATP-binding cassette sub-family G member 1|ATP-binding cassette transporter 8|ATP-binding cassette transporter member 1 of subfamily G|homolog of Drosophila white|white protein homolog (ATP-binding cassette transporter 8) 20121230 -9606 9620 CELSR1 RP5-1163J1.5 CDHF9|FMI2|HFMI2|ME2 HGNC:1850|MIM:604523|Ensembl:ENSG00000075275|HPRD:05160|Vega:OTTHUMG00000150423 22 22q13.3 cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) protein-coding CELSR1 cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) O cadherin EGF LAG seven-pass G-type receptor 1|cadherin family member 9|flamingo homolog 2|protocadherin flamingo 2 20121230 -9606 9622 KLK4 - AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein HGNC:6365|MIM:603767|Ensembl:ENSG00000167749|HPRD:04793 19 19q13.41 kallikrein-related peptidase 4 protein-coding KLK4 kallikrein-related peptidase 4 O androgen-regulated message 1|enamel matrix serine protease 1|enamel matrix serine proteinase 1|kallikrein-4|kallikrein-like protein 1|prostase|serine protease 17 20121230 -9606 9623 TCL1B - SYN-1|TML1 HGNC:11649|MIM:603769|Ensembl:ENSG00000213231|HPRD:04795|Vega:OTTHUMG00000028912 14 14q32.1 T-cell leukemia/lymphoma 1B protein-coding TCL1B T-cell leukemia/lymphoma 1B O T-cell leukemia/lymphoma protein 1B|T-cell lymphoma/leukemia 1B|TCL1/ MTCP1-like 1|oncogene TCL-1B|syncytiotrophoblast-specific protein 20121230 -9606 9625 AATK - AATYK|AATYK1|LMR1|LMTK1|p35BP HGNC:21|MIM:605276|Ensembl:ENSG00000181409|HPRD:05591|Vega:OTTHUMG00000132717 17 17q25.3 apoptosis-associated tyrosine kinase protein-coding AATK apoptosis-associated tyrosine kinase O CDK5-binding protein|brain apoptosis-associated tyrosine kinase|lemur tyrosine kinase 1|p35-binding protein|serine/threonine-protein kinase LMTK1 20121230 -9606 9626 GUCA1C - GCAP3 HGNC:4680|MIM:605128|Ensembl:ENSG00000138472|HPRD:05499|Vega:OTTHUMG00000159204 3 3q13.1 guanylate cyclase activator 1C protein-coding GUCA1C guanylate cyclase activator 1C O GCAP 3|guanylyl cyclase-activating protein 3 20121230 -9606 9627 SNCAIP - SYPH1|Sph1 HGNC:11139|MIM:603779|Ensembl:ENSG00000064692|HPRD:04804|Vega:OTTHUMG00000128915 5 5q23.2 synuclein, alpha interacting protein protein-coding SNCAIP synuclein, alpha interacting protein O alpha-synuclein-interacting protein|synphilin-1 20121230 -9606 9628 RGS6 - GAP HGNC:10002|MIM:603894|Ensembl:ENSG00000182732|Vega:OTTHUMG00000171340 14 14q24.3 regulator of G-protein signaling 6 protein-coding RGS6 regulator of G-protein signaling 6 O GTPase activating protein|H_DJ1108A12.1|S914|WUGSC:H_DJ0283M22.1|WUGSC:H_DJ1108A12.1|regulator of G-protein signalling 6 20121230 -9606 9629 CLCA3P - CLCA3 HGNC:2017|MIM:604337|HPRD:05065 1 1p31-p22 chloride channel accessory 3, pseudogene pseudo CLCA3P chloride channel accessory 3, pseudogene O - 20121230 -9606 9630 GNA14 - - HGNC:4382|MIM:604397|Ensembl:ENSG00000156049|HPRD:05095|Vega:OTTHUMG00000020058 9 9q21 guanine nucleotide binding protein (G protein), alpha 14 protein-coding GNA14 guanine nucleotide binding protein (G protein), alpha 14 O G-protein subunit alpha-14|g alpha-14|guanine nucleotide-binding protein 14|guanine nucleotide-binding protein subunit alpha-14 20121230 -9606 9631 NUP155 - N155 HGNC:8063|MIM:606694|Ensembl:ENSG00000113569|HPRD:05984|Vega:OTTHUMG00000090803 5 5p13.1 nucleoporin 155kDa protein-coding NUP155 nucleoporin 155kDa O 155 kDa nucleoporin|nuclear pore complex protein Nup155|nucleoporin Nup155 20121230 -9606 9632 SEC24C - - HGNC:10705|MIM:607185|Ensembl:ENSG00000176986|HPRD:06217|Vega:OTTHUMG00000018476 10 10q22.2 SEC24 family, member C (S. cerevisiae) protein-coding SEC24C SEC24 family, member C (S. cerevisiae) O SEC24 related gene family, member C|SEC24-related protein C|protein transport protein Sec24C 20121230 -9606 9633 MTL5 - CXCDC2|MTLT|TESMIN HGNC:7446|MIM:604374|Ensembl:ENSG00000132749|HPRD:09186|Vega:OTTHUMG00000167891 11 11q13.2-q13.3 metallothionein-like 5, testis-specific (tesmin) protein-coding MTL5 metallothionein-like 5, testis-specific (tesmin) O CXC domain containing 2|tesmin|testis-specific metallothionein-like protein 20121230 -9606 9635 CLCA2 - CACC|CACC3|CLCRG2|CaCC-3 HGNC:2016|MIM:604003|Ensembl:ENSG00000137975|HPRD:04923|Vega:OTTHUMG00000010256 1 1p22.3 chloride channel accessory 2 protein-coding CLCA2 chloride channel accessory 2 O CLCA family member 2, chloride channel regulator|calcium-activated chloride channel family member 2|calcium-activated chloride channel protein 3|calcium-activated chloride channel regulator 2|calcium-activated chloride channel-2|chloride channel regulator 2|chloride channel, calcium activated, family member 2|hCLCA2|hCaCC-3 20121230 -9606 9636 ISG15 - G1P2|IFI15|IP17|UCRP|hUCRP HGNC:4053|MIM:147571|Ensembl:ENSG00000187608|HPRD:00958|Vega:OTTHUMG00000040777 1 1p36.33 ISG15 ubiquitin-like modifier protein-coding ISG15 ISG15 ubiquitin-like modifier O interferon, alpha-inducible protein (clone IFI-15K)|interferon-induced 17-kDa/15-kDa protein|interferon-stimulated protein, 15 kDa|ubiquitin cross-reactive protein|ubiquitin-like protein ISG15 20121230 -9606 9637 FEZ2 - HUM3CL HGNC:3660|MIM:604826|Ensembl:ENSG00000171055|HPRD:09213|Vega:OTTHUMG00000152148 2 2p21 fasciculation and elongation protein zeta 2 (zygin II) protein-coding FEZ2 fasciculation and elongation protein zeta 2 (zygin II) O fasciculation and elongation protein zeta-2|pre-T/NK cell associated protein (3Cl)|zygin 2|zygin II|zygin-2 20121230 -9606 9638 FEZ1 - - HGNC:3659|MIM:604825|Ensembl:ENSG00000149557|HPRD:09212|Vega:OTTHUMG00000165886 11 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) protein-coding FEZ1 fasciculation and elongation protein zeta 1 (zygin I) O fasciculation and elongation protein zeta-1|zygin I|zygin-1 20121230 -9606 9639 ARHGEF10 - GEF10 HGNC:14103|MIM:608136|Ensembl:ENSG00000104728|HPRD:09735|Vega:OTTHUMG00000163626 8 8p23 Rho guanine nucleotide exchange factor (GEF) 10 protein-coding ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 O rho guanine nucleotide exchange factor 10 20121230 -9606 9640 ZNF592 - CAMOS|SCAR5 HGNC:28986|MIM:613624|Ensembl:ENSG00000166716|HPRD:10339|Vega:OTTHUMG00000172490 15 15q25.3 zinc finger protein 592 protein-coding ZNF592 zinc finger protein 592 O - 20121230 -9606 9641 IKBKE RP11-534L20.1 IKK-E|IKK-i|IKKE|IKKI HGNC:14552|MIM:605048|Ensembl:ENSG00000143466|HPRD:05442|Vega:OTTHUMG00000036346 1 1q32.1 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon protein-coding IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon O I-kappa-B kinase epsilon|IKK-epsilon|IKK-related kinase epsilon|inducible I kappa-B kinase|inducible IkappaB kinase|inhibitor of nuclear factor kappa-B kinase subunit epsilon 20121230 -9606 9643 MORF4L2 RP5-1055C14.2 MORFL2|MRGX HGNC:16849|MIM:300409|Ensembl:ENSG00000123562|HPRD:02326|Vega:OTTHUMG00000022104 X Xq22 mortality factor 4 like 2 protein-coding MORF4L2 mortality factor 4 like 2 O MORF-related gene X protein|MSL3-2 protein|mortality factor 4-like protein 2|protein MSL3-2|transcription factor-like protein MRGX 20121230 -9606 9644 SH3PXD2A - FISH|SH3MD1|TKS5 HGNC:23664|Ensembl:ENSG00000107957|HPRD:10228|Vega:OTTHUMG00000018997 10 10q24.33 SH3 and PX domains 2A protein-coding SH3PXD2A SH3 and PX domains 2A O SH3 and PX domain-containing protein 2A|SH3 multiple domains 1|adapter protein TKS5|adaptor protein TKS5|five SH3 domain-containing protein|tyrosine kinase substrate with five SH3 domains 20121230 -9606 9645 MICAL2 - MICAL-2|MICAL2PV1|MICAL2PV2 HGNC:24693|MIM:608881|Ensembl:ENSG00000133816|HPRD:10085|Vega:OTTHUMG00000165744 11 11p15.3 microtubule associated monoxygenase, calponin and LIM domain containing 2 protein-coding MICAL2 microtubule associated monoxygenase, calponin and LIM domain containing 2 O flavoprotein oxidoreductase MICAL2|molecule interacting with CasL protein 2|protein MICAL-2|protein-methionine sulfoxide oxidase MICAL2 20121230 -9606 9646 CTR9 - SH2BP1|TSBP|p150|p150TSP HGNC:16850|MIM:609366|Ensembl:ENSG00000198730|HPRD:06717|Vega:OTTHUMG00000165789 11 11p15.3 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein-coding CTR9 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) O RNA polymerase-associated protein CTR9 homolog|SH2 domain binding protein 1 (tetratricopeptide repeat containing)|SH2 domain-binding protein 1|TPR-containing, SH2-binding phosphoprotein 20121230 -9606 9647 PPM1F - CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 HGNC:19388|Ensembl:ENSG00000100034|HPRD:10163|Vega:OTTHUMG00000150835 22 22q11.22 protein phosphatase, Mg2+/Mn2+ dependent, 1F protein-coding PPM1F protein phosphatase, Mg2+/Mn2+ dependent, 1F O Ca(2+)/calmodulin-dependent protein kinase phosphatase|CaM-kinase phosphatase|PP2C phosphatase|partner of PIX 2|protein fem-2 homolog|protein phosphatase 1F|protein phosphatase 1F (PP2C domain containing) 20121230 -9606 9648 GCC2 - GCC185|RANBP2L4|REN53 HGNC:23218|MIM:612711|Ensembl:ENSG00000135968|HPRD:11001|Vega:OTTHUMG00000153214 2 2q12.3 GRIP and coiled-coil domain containing 2 protein-coding GCC2 GRIP and coiled-coil domain containing 2 O 185 kDa Golgi coiled-coil protein|CLL-associated antigen KW-11|CTCL tumor antigen se1-1|GCC protein, 185-kD|GRIP and coiled-coil domain-containing protein 2|Golgi coiled-coil protein GCC185|Ran-binding protein 2-like 4|renal carcinoma antigen NY-REN-53 20121230 -9606 9649 RALGPS1 RP13-225O21.1 RALGEF2|RALGPS1A HGNC:16851|MIM:614444|Ensembl:ENSG00000136828|HPRD:11479|Vega:OTTHUMG00000020696 9 9q33.3 Ral GEF with PH domain and SH3 binding motif 1 protein-coding RALGPS1 Ral GEF with PH domain and SH3 binding motif 1 O Ral guanine nucleotide exchange factor RalGPS1A|RalGEF 2|ral GEF with PH domain and SH3-binding motif 1|ral guanine nucleotide exchange factor 2|ralA exchange factor RalGPS1|ras-specific guanine nucleotide-releasing factor RalGPS1 20121230 -9606 9650 MTFR1 - CHPPR|FAM54A2 HGNC:29510|Ensembl:ENSG00000066855|HPRD:12389|Vega:OTTHUMG00000164468 8 8q13.1 mitochondrial fission regulator 1 protein-coding MTFR1 mitochondrial fission regulator 1 O chondrocyte protein with a poly-proline region 20121230 -9606 9651 PLCH2 RP3-395M20.1 PLC-eta2|PLCL4|PLCeta2 HGNC:29037|MIM:612836|Ensembl:ENSG00000149527|Vega:OTTHUMG00000000719 1 1p36.32 phospholipase C, eta 2 protein-coding PLCH2 phospholipase C, eta 2 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase eta-2|PLC-L4|phosphoinositide phospholipase C-eta-2|phosphoinositide phospholipase C-like 4|phospholipase C-eta-2|phospholipase C-eta2|phospholipase C-like 4|phospholipase C-like protein 4 20121230 -9606 9652 TTC37 - KIAA0372|Ski3 HGNC:23639|MIM:614589|Ensembl:ENSG00000198677|HPRD:11079|Vega:OTTHUMG00000121165 5 5q15 tetratricopeptide repeat domain 37 protein-coding TTC37 tetratricopeptide repeat domain 37 O SKI3 homolog|TPR repeat protein 37|tetratricopeptide repeat protein 37|thespin|tricho-hepatic-enteric syndrome protein 20121230 -9606 9653 HS2ST1 - dJ604K5.2 HGNC:5193|MIM:604844|Ensembl:ENSG00000153936|HPRD:09215|Vega:OTTHUMG00000010255 1 1p22.3 heparan sulfate 2-O-sulfotransferase 1 protein-coding HS2ST1 heparan sulfate 2-O-sulfotransferase 1 O 2-O-sulfotransferase|2OST 20121230 -9606 9654 TTLL4 - - HGNC:28976|Ensembl:ENSG00000135912|HPRD:15586|Vega:OTTHUMG00000133081 2 2p24.3-p24.1 tubulin tyrosine ligase-like family, member 4 protein-coding TTLL4 tubulin tyrosine ligase-like family, member 4 O tubulin polyglutamylase TTLL4|tubulin--tyrosine ligase-like protein 4 20121230 -9606 9655 SOCS5 - CIS6|CISH6|Cish5|SOCS-5 HGNC:16852|MIM:607094|Ensembl:ENSG00000171150|HPRD:06159|Vega:OTTHUMG00000128852 2 2p21 suppressor of cytokine signaling 5 protein-coding SOCS5 suppressor of cytokine signaling 5 O CIS-6|cytokine-inducible SH2 protein 6|cytokine-inducible SH2-containing protein 5 20121230 -9606 9656 MDC1 DAAP-285E11.7 NFBD1 HGNC:21163|MIM:607593|Ensembl:ENSG00000137337|HPRD:16252|Vega:OTTHUMG00000031075 6 6p21.3 mediator of DNA-damage checkpoint 1 protein-coding MDC1 mediator of DNA-damage checkpoint 1 O homologue to Drosophila photoreceptor protein calphotin|mediator of DNA damage checkpoint 1|mediator of DNA damage checkpoint protein 1|nuclear factor with BRCT domains 1 20121230 -9606 9657 IQCB1 OK/SW-cl.85 NPHP5|PIQ|SLSN5 HGNC:28949|MIM:609237|Ensembl:ENSG00000173226|HPRD:11049|Vega:OTTHUMG00000128677 3 3q13.33|3q21.1 IQ motif containing B1 protein-coding IQCB1 IQ motif containing B1 O IQ calmodulin-binding motif containing 1|IQ calmodulin-binding motif-containing protein 1|nephrocystin 5|p53 and DNA damage-regulated IQ motif protein 20121230 -9606 9658 ZNF516 - HsT287 HGNC:28990|Ensembl:ENSG00000101493 18 18q23 zinc finger protein 516 protein-coding ZNF516 zinc finger protein 516 O - 20121230 -9606 9659 PDE4DIP RP4-791M13.2 CMYA2|MMGL HGNC:15580|MIM:608117|Ensembl:ENSG00000178104|HPRD:10482|Vega:OTTHUMG00000013846 1 1q12 phosphodiesterase 4D interacting protein protein-coding PDE4DIP phosphodiesterase 4D interacting protein O cardiomyopathy-associated protein 2|myomegalin|phosphodiesterase 4D-interacting protein 20121230 -9606 9662 CEP135 - CEP4|KIAA0635|MCPH8 HGNC:29086|MIM:611423|Ensembl:ENSG00000174799|HPRD:09954|HPRD:11097|Vega:OTTHUMG00000160748 4 4q12 centrosomal protein 135kDa protein-coding CEP135 centrosomal protein 135kDa O centrosomal protein 4|centrosomal protein of 135 kDa|centrosome protein cep135 20121230 -9606 9663 LPIN2 - - HGNC:14450|MIM:605519|Ensembl:ENSG00000101577|HPRD:16114|Vega:OTTHUMG00000131508 18 18p11.31 lipin 2 protein-coding LPIN2 lipin 2 O lipin-2|phosphatidate phosphatase LPIN2 20121230 -9606 9665 KIAA0430 - LKAP|MARF1|PPP1R34 HGNC:29562|MIM:614593|Ensembl:ENSG00000166783|HPRD:13992|Vega:OTTHUMG00000129884 16 16p13.11 KIAA0430 protein-coding KIAA0430 KIAA0430 O limkain b1|limkain-b1|meiosis arrest female protein 1|protein phosphatase 1, regulatory subunit 34 20121230 -9606 9666 DZIP3 - PPP1R66|UURF2|hRUL138 HGNC:30938|MIM:608672|Ensembl:ENSG00000198919|HPRD:10562|Vega:OTTHUMG00000159232 3 3q13.13 DAZ interacting protein 3, zinc finger protein-coding DZIP3 DAZ interacting protein 3, zinc finger O DAZ-interacting protein 3|E3 ubiquitin-protein ligase DZIP3|RNA-binding ubiquitin ligase of 138 kDa|UURF2 ubiquitin ligase|human RNA-binding ubiquitin ligase of 138 kDa|protein phosphatase 1, regulatory subunit 66|zinc finger DAZ interacting protein 3 20121230 -9606 9667 SAFB2 - - HGNC:21605|MIM:608066|Ensembl:ENSG00000130254|HPRD:06424|Vega:OTTHUMG00000180374 19 19p13.3 scaffold attachment factor B2 protein-coding SAFB2 scaffold attachment factor B2 O SAF-B2 20121230 -9606 9668 ZNF432 - - HGNC:20810|Ensembl:ENSG00000256087|HPRD:11716 19 19q13.41 zinc finger protein 432 protein-coding ZNF432 zinc finger protein 432 O - 20121230 -9606 9669 EIF5B - IF2 HGNC:30793|MIM:606086|Ensembl:ENSG00000158417|HPRD:07304|Vega:OTTHUMG00000153242 2 2q11.2 eukaryotic translation initiation factor 5B protein-coding EIF5B eukaryotic translation initiation factor 5B O eIF-5B|translation initiation factor IF-2|translation initiation factor IF2 20121230 -9606 9670 IPO13 RP11-7O11.4 IMP13|KAP13|LGL2|RANBP13 HGNC:16853|MIM:610411|Ensembl:ENSG00000117408|HPRD:13742|Vega:OTTHUMG00000008297 1 1p34.1 importin 13 protein-coding IPO13 importin 13 O Ran binding protein 13|importin-13|karyopherin 13|karyopherin-13|late gestation lung 2|ran-binding protein 13 20121230 -9606 9671 WSCD2 - - HGNC:29117|Ensembl:ENSG00000075035|HPRD:17196|Vega:OTTHUMG00000169579 12 12q23.3 WSC domain containing 2 protein-coding WSCD2 WSC domain containing 2 O WSC domain-containing protein 2 20121230 -9606 9672 SDC3 - SDCN|SYND3 HGNC:10660|MIM:186357|Ensembl:ENSG00000162512|HPRD:01719|Vega:OTTHUMG00000043646 1 1pter-p22.3 syndecan 3 protein-coding SDC3 syndecan 3 O N-syndecan|syndecan neural type|syndecan proteoglycan 3|syndecan-3 20121230 -9606 9673 SLC25A44 - RP11-54H19.3 HGNC:29036|MIM:610824|Ensembl:ENSG00000160785|HPRD:17190|Vega:OTTHUMG00000014816 1 1q22 solute carrier family 25, member 44 protein-coding SLC25A44 solute carrier family 25, member 44 O solute carrier family 25 member 44 20121230 -9606 9674 KIAA0040 - - HGNC:28950|Ensembl:ENSG00000235750|HPRD:13776|Vega:OTTHUMG00000034880 1 1q24-q25 KIAA0040 protein-coding KIAA0040 KIAA0040 O uncharacterized protein KIAA0040 20121230 -9606 9675 TTI1 - KIAA0406|smg-10 HGNC:29029|MIM:614425|Ensembl:ENSG00000101407|HPRD:13799|Vega:OTTHUMG00000032433 20 20q11.23 TELO2 interacting protein 1 protein-coding TTI1 TELO2 interacting protein 1 O TEL2-interacting protein 1 homolog|TELO2-interacting protein 1 homolog|Tel two interacting protein 1|Tel2 interacting protein 1 homolog|smg-10 homolog, nonsense mediated mRNA decay factor 20121230 -9606 9677 PPIP5K1 - HISPPD2A|IP6K|IPS1|VIP1|hsVIP1 HGNC:29023|MIM:610979|Ensembl:ENSG00000168781|HPRD:13798|Vega:OTTHUMG00000059758 15 15q15.3 diphosphoinositol pentakisphosphate kinase 1 protein-coding PPIP5K1 diphosphoinositol pentakisphosphate kinase 1 O IP6 kinase|VIP1 homolog|histidine acid phosphatase domain containing 2A|histidine acid phosphatase domain-containing protein 2A|inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1|inositol pyrophosphate synthase 1|insP6 and PP-IP5 kinase 1 20121230 -9606 9678 PHF14 - - HGNC:22203|Ensembl:ENSG00000106443|HPRD:17845|Vega:OTTHUMG00000150463 7 7p21.3 PHD finger protein 14 protein-coding PHF14 PHD finger protein 14 O - 20121230 -9606 9679 FAM53B - KIAA0140|RP11-12J10.2|bA12J10.2 HGNC:28968|Ensembl:ENSG00000189319|HPRD:13314|Vega:OTTHUMG00000019215 10 10q26.13 family with sequence similarity 53, member B protein-coding FAM53B family with sequence similarity 53, member B O protein FAM53B 20121230 -9606 9681 DEPDC5 LL22NC03-113A11.1 DEP.5 HGNC:18423|MIM:614191|Ensembl:ENSG00000100150|HPRD:16795|Vega:OTTHUMG00000030926 22 22q12.3 DEP domain containing 5 protein-coding DEPDC5 DEP domain containing 5 O DEP domain-containing protein 5 20121230 -9606 9682 KDM4A - JHDM3A|JMJD2|JMJD2A HGNC:22978|MIM:609764|Ensembl:ENSG00000066135|HPRD:17168|Vega:OTTHUMG00000007560 1 1p34.1 lysine (K)-specific demethylase 4A protein-coding KDM4A lysine (K)-specific demethylase 4A O jmjC domain-containing histone demethylation protein 3A|jumonji C domain-containing histone demethylase 3A|jumonji domain containing 2|jumonji domain containing 2A|jumonji domain-containing protein 2A|lysine-specific demethylase 4A 20121230 -9606 9683 N4BP1 - - HGNC:29850|Ensembl:ENSG00000102921|HPRD:08109|HPRD:14800|Vega:OTTHUMG00000175421 16 16q12.1 NEDD4 binding protein 1 protein-coding N4BP1 NEDD4 binding protein 1 O NEDD4-binding protein 1 20121230 -9606 9684 LRRC14 - LRRC14A HGNC:20419|Ensembl:ENSG00000160959|HPRD:14312|Vega:OTTHUMG00000165179 8 8q24.3 leucine rich repeat containing 14 protein-coding LRRC14 leucine rich repeat containing 14 O leucine-rich repeat-containing protein 14 20121230 -9606 9685 CLINT1 - CLINT|ENTH|EPN4|EPNR HGNC:23186|MIM:607265|Ensembl:ENSG00000113282|HPRD:06273|Vega:OTTHUMG00000163527 5 5q33.3 clathrin interactor 1 protein-coding CLINT1 clathrin interactor 1 O clathrin interacting protein localized in the trans-Golgi region|enthoprotin|epsin 4|epsin-related protein|epsinR 20121230 -9606 9686 VGLL4 - VGL-4 HGNC:28966|Ensembl:ENSG00000144560|HPRD:11672|Vega:OTTHUMG00000129739 3 3p25.3 vestigial like 4 (Drosophila) protein-coding VGLL4 vestigial like 4 (Drosophila) O Vestigial-like 4|transcription cofactor vestigial-like protein 4 20121230 -9606 9687 GREB1 - - HGNC:24885|MIM:611736|Ensembl:ENSG00000196208|HPRD:13611|Vega:OTTHUMG00000141276 2 2p25.1 growth regulation by estrogen in breast cancer 1 protein-coding GREB1 growth regulation by estrogen in breast cancer 1 O gene regulated by estrogen in breast cancer|gene regulated in breast cancer 1 protein|protein GREB1 20121230 -9606 9688 NUP93 - NIC96 HGNC:28958|MIM:614351|Ensembl:ENSG00000102900|HPRD:14854|Vega:OTTHUMG00000133278 16 16q13 nucleoporin 93kDa protein-coding NUP93 nucleoporin 93kDa O 93 kDa nucleoporin|nuclear pore complex protein Nup93|nucleoporin Nup93 20121230 -9606 9689 BZW1 - BZAP45|Nbla10236 HGNC:18380|Ensembl:ENSG00000082153|HPRD:16570|Vega:OTTHUMG00000154560 2 2q33 basic leucine zipper and W2 domains 1 protein-coding BZW1 basic leucine zipper and W2 domains 1 O basic leucine zipper and W2 domain-containing protein 1|basic leucine-zipper protein BZAP45|putative protein product of Nbla10236 20121230 -9606 9690 UBE3C tcag7.998 HECTH2 HGNC:16803|MIM:614454|Ensembl:ENSG00000009335|HPRD:15604|Vega:OTTHUMG00000157239 7 7q36.3 ubiquitin protein ligase E3C protein-coding UBE3C ubiquitin protein ligase E3C O ubiquitin-protein isopeptide ligase (E3)|ubiquitin-protein ligase E3C 20121230 -9606 9692 KIAA0391 - MRPP3 HGNC:19958|MIM:609947|Ensembl:ENSG00000100890|HPRD:18711|Vega:OTTHUMG00000170997 14 14q13.2 KIAA0391 protein-coding KIAA0391 KIAA0391 O mitochondrial RNase P protein 3|mitochondrial RNase P subunit 3|mitochondrial ribonuclease P protein 3 20121230 -9606 9693 RAPGEF2 - CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|Rap-GEP|nRap GEP HGNC:16854|MIM:609530|Ensembl:ENSG00000109756|Vega:OTTHUMG00000161451 4 4q32.1 Rap guanine nucleotide exchange factor (GEF) 2 protein-coding RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 O PDZ domain containing guanine nucleotide exchange factor (GEF) 1|PDZ domain-containing guanine nucleotide exchange factor 1|RA(Ras/Rap1A-associating)-GEF|neural RAP guanine nucleotide exchange protein|rap guanine nucleotide exchange factor 2 20121230 -9606 9694 EMC2 - KIAA0103|TTC35 HGNC:28963|MIM:607722|Ensembl:ENSG00000104412|HPRD:09657|Vega:OTTHUMG00000164873 8 8q23.1 ER membrane protein complex subunit 2 protein-coding EMC2 ER membrane protein complex subunit 2 O TPR repeat protein 35|tetratricopeptide repeat domain 35|tetratricopeptide repeat protein 35 20121230 -9606 9695 EDEM1 - EDEM HGNC:18967|MIM:607673|Ensembl:ENSG00000134109|HPRD:09644|Vega:OTTHUMG00000154896 3 3p26.1 ER degradation enhancer, mannosidase alpha-like 1 protein-coding EDEM1 ER degradation enhancer, mannosidase alpha-like 1 O ER degradation-enhancing alpha-mannosidase-like 1 20121230 -9606 9696 CROCC - ROLT HGNC:21299|Ensembl:ENSG00000058453|HPRD:16758|Vega:OTTHUMG00000002200 1 1p36.13 ciliary rootlet coiled-coil, rootletin protein-coding CROCC ciliary rootlet coiled-coil, rootletin O Tax1-binding protein 2|ciliary rootlet coiled-coil protein|rootletin|rootletin, ciliary rootlet protein 20121230 -9606 9697 TRAM2 - - HGNC:16855|MIM:608485|Ensembl:ENSG00000065308|HPRD:16338|Vega:OTTHUMG00000014850 6 6p21.1-p12 translocation associated membrane protein 2 protein-coding TRAM2 translocation associated membrane protein 2 O TRAM-like protein|translocating chain-associated membrane protein 2 20121230 -9606 9698 PUM1 RP1-65J11.4 HSPUM|PUMH|PUMH1|PUML1 HGNC:14957|MIM:607204|Ensembl:ENSG00000134644|HPRD:06230|Vega:OTTHUMG00000003795 1 1p35.2 pumilio homolog 1 (Drosophila) protein-coding PUM1 pumilio homolog 1 (Drosophila) O pumilio homolog 1|pumilio-1 20121230 -9606 9699 RIMS2 - OBOE|RAB3IP3|RIM2 HGNC:17283|MIM:606630|Ensembl:ENSG00000176406|HPRD:09436|Vega:OTTHUMG00000162097 8 8q22.3 regulating synaptic membrane exocytosis 2 protein-coding RIMS2 regulating synaptic membrane exocytosis 2 O RAB3 interacting protein 3|RIM 2|non-small cell lung cancer RimL3a protein|non-small cell lung cancer RimL3c protein|nuclear protein|rab-3-interacting molecule 2|rab-3-interacting protein 3|rab3-interacting molecule 2|regulating synaptic membrane exocytosis protein 2 20121230 -9606 9700 ESPL1 - ESP1|SEPA HGNC:16856|MIM:604143|Ensembl:ENSG00000135476|HPRD:06825|Vega:OTTHUMG00000169674 12 12q extra spindle pole bodies homolog 1 (S. cerevisiae) protein-coding ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) O caspase-like protein ESPL1|extra spindle poles like 1|extra spindle poles-like 1 protein|separin 20121230 -9606 9701 PPP6R2 RP4-579N16.5 KIAA0685|PP6R2|SAP190|SAPS2 HGNC:19253|MIM:610877|Ensembl:ENSG00000100239|HPRD:11102|Vega:OTTHUMG00000150199 22 22q13.33 protein phosphatase 6, regulatory subunit 2 protein-coding PPP6R2 protein phosphatase 6, regulatory subunit 2 O SAPS domain family, member 2|serine/threonine-protein phosphatase 6 regulatory subunit 2 20121230 -9606 9702 CEP57 - MVA2|PIG8|TSP57 HGNC:30794|MIM:607951|Ensembl:ENSG00000166037|HPRD:16261|Vega:OTTHUMG00000167740 11 11q21 centrosomal protein 57kDa protein-coding CEP57 centrosomal protein 57kDa O FGF2-interacting protein|centrosomal protein of 57 kDa|proliferation-inducing protein 8|testis-specific protein 57|translokin 20121230 -9606 9703 KIAA0100 - BCOX|BCOX1|CT101 HGNC:28960|MIM:610664|Ensembl:ENSG00000007202|HPRD:11064|Vega:OTTHUMG00000166587 17 17q11.2 KIAA0100 protein-coding KIAA0100 KIAA0100 O U937-associated antigen|UPF0378 protein KIAA0100|antigen MLAA-22|breast cancer overexpressed gene 1|breast cancer-overexpressed gene 1 protein|cancer/testis antigen 101 20121230 -9606 9704 DHX34 - DDX34|HRH1 HGNC:16719|Ensembl:ENSG00000134815|HPRD:13144|Vega:OTTHUMG00000149959 19 19q13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 34 protein-coding DHX34 DEAH (Asp-Glu-Ala-His) box polypeptide 34 O DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 34|DEAH box protein 34|probable ATP-dependent RNA helicase DHX34|probable ATP-dependent helicase DHX34 20121230 -9606 9705 ST18 - ZNF387 HGNC:18695|Ensembl:ENSG00000147488|HPRD:18110|Vega:OTTHUMG00000164233 8 8q11.23 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) protein-coding ST18 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) O suppression of tumorigenicity 18 protein|zinc finger protein 387 20121230 -9606 9706 ULK2 - ATG1B|Unc51.2 HGNC:13480|MIM:608650|Ensembl:ENSG00000083290|HPRD:10556|Vega:OTTHUMG00000059511 17 17p11.2 unc-51-like kinase 2 (C. elegans) protein-coding ULK2 unc-51-like kinase 2 (C. elegans) O serine/threonine-protein kinase ULK2 20121230 -9606 9708 PCDHGA8 - PCDH-GAMMA-A8 HGNC:8706|MIM:606295|Ensembl:ENSG00000253767|HPRD:09385|Vega:OTTHUMG00000164053 5 5q31 protocadherin gamma subfamily A, 8 protein-coding PCDHGA8 protocadherin gamma subfamily A, 8 O protocadherin gamma-A8 20121230 -9606 9709 HERPUD1 - HERP|Mif1|SUP HGNC:13744|MIM:608070|Ensembl:ENSG00000051108|HPRD:07456|Vega:OTTHUMG00000133276 16 16q13 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 protein-coding HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 O MMS-inducible|homocysteine-inducible endoplasmic reticulum stress-inducible ubiquitin-like domain member 1 protein|homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein|methyl methanesulfonate (MMF)-inducible fragment protein 1 20121230 -9606 9710 KIAA0355 - - HGNC:29016|Ensembl:ENSG00000166398|HPRD:11077|Vega:OTTHUMG00000180505 19 19q13.11 KIAA0355 protein-coding KIAA0355 KIAA0355 O uncharacterized protein KIAA0355 20121230 -9606 9711 KIAA0226 hCG_22771 RUBICON HGNC:28991|MIM:613516|Ensembl:ENSG00000145016|Vega:OTTHUMG00000155452 3 3q29 KIAA0226 protein-coding KIAA0226 KIAA0226 O RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein|RUN domain protein as Beclin 1-interacting and cysteine-rich containing|baron|beclin-1 associated RUN domain containing protein|run domain Beclin-1 interacting and cystein-rich containing protein|rundataxin 20121230 -9606 9712 USP6NL RP11-89C21.1 RNTRE|TRE2NL HGNC:16858|MIM:605405|Ensembl:ENSG00000148429|Vega:OTTHUMG00000017672 10 10p13 USP6 N-terminal like protein-coding USP6NL USP6 N-terminal like O RN-tre|USP6 N-terminal-like protein|related to the N terminus of tre|related to the N-terminus of tre 20121230 -9606 9715 FAM131B - - HGNC:22202|Ensembl:ENSG00000159784|HPRD:13816|Vega:OTTHUMG00000152697 7 7q34 family with sequence similarity 131, member B protein-coding FAM131B family with sequence similarity 131, member B O protein FAM131B 20121230 -9606 9716 AQR - IBP160|fSAP164 HGNC:29513|MIM:610548|Ensembl:ENSG00000021776|HPRD:12468|Vega:OTTHUMG00000172257 15 15q14 aquarius homolog (mouse) protein-coding AQR aquarius homolog (mouse) O functional spliceosome-associated protein 164|intron-binding protein aquarius|intron-binding protein of 160 kDa 20121230 -9606 9717 SEC14L5 - PRELID4B HGNC:29032|Ensembl:ENSG00000103184|Vega:OTTHUMG00000176942 16 16p13.3 SEC14-like 5 (S. cerevisiae) protein-coding SEC14L5 SEC14-like 5 (S. cerevisiae) O SEC14-like protein 5 20121230 -9606 9718 ECE2 hCG_2022032 - HGNC:13275|MIM:610145|Ensembl:ENSG00000145194|HPRD:09931|Vega:OTTHUMG00000150551 3 3q27.1|. endothelin converting enzyme 2 protein-coding ECE2 endothelin converting enzyme 2 O ECE-2|endothelin-converting enzyme 2 20121230 -9606 9719 ADAMTSL2 XX-FW80267E6.1 GPHYSD1 HGNC:14631|MIM:612277|Ensembl:ENSG00000197859|HPRD:11096|Vega:OTTHUMG00000131706 9 9q34.2 ADAMTS-like 2 protein-coding ADAMTSL2 ADAMTS-like 2 O ADAMTS-like protein 2|ADAMTSL-2 20121230 -9606 9720 CCDC144A - - HGNC:29072|Ensembl:ENSG00000170160|Ensembl:ENSG00000266302|Vega:OTTHUMG00000059178|Vega:OTTHUMG00000179236 17 17p11.2 coiled-coil domain containing 144A protein-coding CCDC144A coiled-coil domain containing 144A O coiled-coil domain-containing protein 144A 20121230 -9606 9721 GPRIN2 - GRIN2|KIAA0514 HGNC:23730|MIM:611240|HPRD:13804 10 10q11.22 G protein regulated inducer of neurite outgrowth 2 protein-coding GPRIN2 G protein regulated inducer of neurite outgrowth 2 O G protein-regulated inducer of neurite outgrowth 2 20121230 -9606 9722 NOS1AP - 6330408P19Rik|CAPON HGNC:16859|MIM:605551|Ensembl:ENSG00000198929|HPRD:12023|Vega:OTTHUMG00000024049 1 1q23.3 nitric oxide synthase 1 (neuronal) adaptor protein protein-coding NOS1AP nitric oxide synthase 1 (neuronal) adaptor protein O C-terminal PDZ domain ligand of neuronal nitric oxide synthase (CAPON)|C-terminal PDZ ligand of neuronal nitric oxide synthase protein|carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein|ligand of neuronal nitric oxide synthase with carboxyl-terminal PDZ domain|nitric oxide synthase 1 adaptor protein 20121230 -9606 9723 SEMA3E - M-SEMAH|M-SemaK|SEMAH|coll-5 HGNC:10727|MIM:608166|Ensembl:ENSG00000170381|HPRD:11545|Vega:OTTHUMG00000154693 7 7q21.11 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein-coding SEMA3E sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E O semaphorin-3E 20121230 -9606 9724 UTP14C - 2700066J21Rik|KIAA0266|UTP14B HGNC:20321|MIM:608969|Ensembl:ENSG00000253797|HPRD:12346|Vega:OTTHUMG00000164353 13 13q14.2 UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast) protein-coding UTP14C UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast) O U3 small nucleolar RNA-associated protein 14 homolog C 20121230 -9606 9725 TMEM63A RP4-559A3.1 KIAA0792 HGNC:29118|Ensembl:ENSG00000196187|HPRD:13817|Vega:OTTHUMG00000037442 1 1q42.12 transmembrane protein 63A protein-coding TMEM63A transmembrane protein 63A O - 20121230 -9606 9726 ZNF646 - - HGNC:29004|Ensembl:ENSG00000167395|HPRD:15886|Vega:OTTHUMG00000047355 16 16p11.2 zinc finger protein 646 protein-coding ZNF646 zinc finger protein 646 O - 20121230 -9606 9727 RAB11FIP3 - CART1|Rab11-FIP3 HGNC:17224|MIM:608738|Ensembl:ENSG00000090565|HPRD:18521|Vega:OTTHUMG00000047843 16 16p13.3 RAB11 family interacting protein 3 (class II) protein-coding RAB11FIP3 RAB11 family interacting protein 3 (class II) O EF hands-containing Rab-interacting protein|FIP3-Rab11|MU-MB-17.148|PAC196A12.1|arfophilin-1|cytoplasmic adaptor for RAR and TR|eferin|rab11 family-interacting protein 3|rab11-family interacting protein 3 20121230 -9606 9728 SECISBP2L - SLAN HGNC:28997|Ensembl:ENSG00000138593|HPRD:17181|Vega:OTTHUMG00000172194 15 15q21.1 SECIS binding protein 2-like protein-coding SECISBP2L SECIS binding protein 2-like O SECIS-binding protein 2-like|selenocysteine insertion sequence-binding protein 2-like 20121230 -9606 9729 KIAA0408 - RP3-403A15.2 HGNC:21636|Ensembl:ENSG00000189367|HPRD:17187|Vega:OTTHUMG00000166439 6 6q22.33 KIAA0408 protein-coding KIAA0408 KIAA0408 O uncharacterized protein KIAA0408 20121230 -9606 9730 VPRBP - DCAF1 HGNC:30911|Ensembl:ENSG00000145041|HPRD:11674|Vega:OTTHUMG00000156895 3 3p21.2 Vpr (HIV-1) binding protein protein-coding VPRBP Vpr (HIV-1) binding protein O DDB1 and CUL4 associated factor 1|DDB1- and CUL4-associated factor 1|HIV-1 Vpr-binding protein|Vpr-binding protein|protein VPRBP|vpr-interacting protein 20121230 -9606 9731 CEP104 RP1-286D6.4 GlyBP|KIAA0562 HGNC:24866|Ensembl:ENSG00000116198|HPRD:11091|Vega:OTTHUMG00000003507 1 1p36.32 centrosomal protein 104kDa protein-coding CEP104 centrosomal protein 104kDa O centrosomal protein of 104 kDa 20121230 -9606 9732 DOCK4 WUGSC:H_GS034D21.1 - HGNC:19192|MIM:607679|Ensembl:ENSG00000128512|HPRD:07407|Vega:OTTHUMG00000155077 7 7q31.1 dedicator of cytokinesis 4 protein-coding DOCK4 dedicator of cytokinesis 4 O dedicator of cytokinesis protein 4 20121230 -9606 9733 SART3 - DSAP1|P100|RP11-13G14|TIP110|p110|p110(nrb) HGNC:16860|MIM:611684|Ensembl:ENSG00000075856|HPRD:11532|Vega:OTTHUMG00000169449 12 12q24.1 squamous cell carcinoma antigen recognized by T cells 3 protein-coding SART3 squamous cell carcinoma antigen recognized by T cells 3 O SART-3|hSART-3|squamous cell carcinoma antigen recognized by T-cells 3|tat-interacting protein of 110 kDa 20121230 -9606 9734 HDAC9 - HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR HGNC:14065|MIM:606543|Ensembl:ENSG00000048052|HPRD:05944|Vega:OTTHUMG00000152487 7 7p21.1 histone deacetylase 9 protein-coding HDAC9 histone deacetylase 9 O MEF-2 interacting transcription repressor (MITR) protein|histone deacetylase 4/5-related protein|histone deacetylase 7B 20121230 -9606 9735 KNTC1 - ROD HGNC:17255|MIM:607363|Ensembl:ENSG00000184445|HPRD:09561|Vega:OTTHUMG00000168861 12 12q24.31 kinetochore associated 1 protein-coding KNTC1 kinetochore associated 1 O Rough Deal homolog, centromere/kinetochore protein|kinetochore-associated protein 1 20121230 -9606 9736 USP34 - - HGNC:20066|Ensembl:ENSG00000115464|HPRD:11665|Vega:OTTHUMG00000152265 2 2p15 ubiquitin specific peptidase 34 protein-coding USP34 ubiquitin specific peptidase 34 O deubiquitinating enzyme 34|ubiquitin carboxyl-terminal hydrolase 34|ubiquitin specific protease 34|ubiquitin thioesterase 34|ubiquitin thiolesterase 34|ubiquitin-specific-processing protease 34 20121230 -9606 9737 GPRASP1 RP4-769N13.1 GASP|GASP-1|GASP1 HGNC:24834|MIM:300417|Ensembl:ENSG00000198932|HPRD:02333|Vega:OTTHUMG00000022061 X Xq22.1 G protein-coupled receptor associated sorting protein 1 protein-coding GPRASP1 G protein-coupled receptor associated sorting protein 1 O G-protein coupled receptor-associated sorting protein 1 20121230 -9606 9738 CCP110 - CP110|Cep110 HGNC:24342|MIM:609544|Ensembl:ENSG00000103540|HPRD:10848|Vega:OTTHUMG00000131459 16 16p12.3 centriolar coiled coil protein 110kDa protein-coding CCP110 centriolar coiled coil protein 110kDa O centriolar coiled-coil protein of 110 kDa|centrosomal protein CP110|centrosomal protein of 110 kDa 20121230 -9606 9739 SETD1A - KMT2F|Set1|Set1A HGNC:29010|MIM:611052|Ensembl:ENSG00000099381|HPRD:13795|Vega:OTTHUMG00000150474 16 16p11.2 SET domain containing 1A protein-coding SETD1A SET domain containing 1A O SET domain-containing protein 1A|hSET1A|histone-lysine N-methyltransferase SETD1A|lysine N-methyltransferase 2F|set1/Ash2 histone methyltransferase complex subunit SET1 20121230 -9606 9741 LAPTM4A UNQ1846/PRO3574 HUMORF13|LAPTM4|MBNT|Mtrp HGNC:6924|Ensembl:ENSG00000068697|HPRD:13959|Vega:OTTHUMG00000090750 2 2p24.1 lysosomal protein transmembrane 4 alpha protein-coding LAPTM4A lysosomal protein transmembrane 4 alpha O golgi 4-transmembrane-spanning transporter MTP|lysosomal-associated protein transmembrane 4 alpha|lysosomal-associated transmembrane protein 4A|membrane nucleoside transporter 20121230 -9606 9742 IFT140 LA16c-313F4.1 MZSDS|WDTC2|c305C8.4|c380F5.1|gs114 HGNC:29077|MIM:614620|Ensembl:ENSG00000187535|HPRD:11093|Vega:OTTHUMG00000128585 16 16p13.3 intraflagellar transport 140 homolog (Chlamydomonas) protein-coding IFT140 intraflagellar transport 140 homolog (Chlamydomonas) O WD and tetratricopeptide repeats protein 2|intraflagellar transport protein 140 homolog 20121230 -9606 9743 ARHGAP32 - GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP HGNC:17399|MIM:608541|Ensembl:ENSG00000134909|HPRD:12257|Vega:OTTHUMG00000165774 11 11q24.3 Rho GTPase activating protein 32 protein-coding ARHGAP32 Rho GTPase activating protein 32 O GAB-associated CDC42|GAB-associated Cdc42/Rac GTPase-activating protein|GTPase regulator interacting with TrkA|GTPase-activating protein for Cdc42 and Rac1|RhoGAP involved in the -catenin-N-cadherin and NMDA receptor signaling|brain-specific Rho GTP-ase-activating protein|brain-specific Rho GTPase-activating protein|rac GTPase activating protein|rho GTPase-activating protein 32|rho-type GTPase-activating protein 32|rho/Cdc42/Rac GTPase-activating protein RICS|rhoGAP involved in the beta-catenin-N-cadherin and NMDA receptor signaling 20121230 -9606 9744 ACAP1 - CENTB1 HGNC:16467|MIM:607763|Ensembl:ENSG00000072818|HPRD:08474|Vega:OTTHUMG00000102199 17 17p13.1 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 protein-coding ACAP1 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 O Arf GAP with coiled coil, ANK repeat and PH domains 1|arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1|centaurin, beta 1|centaurin-beta-1|cnt-b1 20121230 -9606 9745 ZNF536 - - HGNC:29025|Ensembl:ENSG00000198597|HPRD:15825|Vega:OTTHUMG00000182112 19 19q12 zinc finger protein 536 protein-coding ZNF536 zinc finger protein 536 O - 20121230 -9606 9746 CLSTN3 - CDHR14|CSTN3|alcbeta HGNC:18371|MIM:611324|Ensembl:ENSG00000139182|HPRD:16725|Vega:OTTHUMG00000168167 12 12p13.31 calsyntenin 3 protein-coding CLSTN3 calsyntenin 3 O alc-beta|alcadein beta|alcadein-beta|cadherin-related family member 14|calsyntenin-3 20121230 -9606 9747 FAM115A - - HGNC:22201|Ensembl:ENSG00000198420|HPRD:13813|Vega:OTTHUMG00000157773 7 7q35 family with sequence similarity 115, member A protein-coding FAM115A family with sequence similarity 115, member A O protein FAM115A 20121230 -9606 9748 SLK - LOSK|STK2|bA16H23.1|se20-9 HGNC:11088|Ensembl:ENSG00000065613|HPRD:11585|Vega:OTTHUMG00000018999 10 10q24.33 STE20-like kinase protein-coding SLK STE20-like kinase O CTCL tumor antigen se20-9|Long Ste20-like Kinase|SNF1 (sucrose nonfermenting, yeast, homolog)-like kinase, SNF1 sucrose nonfermenting like kinase|SNF1 sucrose nonfermenting like kinase|STE20-like serine/threonine-protein kinase|STE20-related kinase|STE20-related serine/threonine-protein kinase|Ste20-related serine/threonine kinase|hSLK|serine/threonine-protein kinase 2 20121230 -9606 9749 PHACTR2 RP3-468K18.3 C6orf56 HGNC:20956|MIM:608724|Ensembl:ENSG00000112419|HPRD:16378|Vega:OTTHUMG00000015732 6 6q24.2 phosphatase and actin regulator 2 protein-coding PHACTR2 phosphatase and actin regulator 2 O - 20121230 -9606 9750 FAM65B - C6orf32|DIFF40|DIFF48|MYONAP|PL48 HGNC:13872|MIM:611410|Ensembl:ENSG00000111913|HPRD:12881|Vega:OTTHUMG00000014375 6 6p22.3-p21.32 family with sequence similarity 65, member B protein-coding FAM65B family with sequence similarity 65, member B O myogenesis-related and NCAM-associated protein homolog|protein FAM65B 20121230 -9606 9751 SNPH - bA314N13.5 HGNC:15931|MIM:604942|Ensembl:ENSG00000101298|HPRD:16081|Vega:OTTHUMG00000031662 20 20p13 syntaphilin protein-coding SNPH syntaphilin O - 20121230 -9606 9752 PCDHA9 - PCDH-ALPHA9 HGNC:8675|MIM:606315|Ensembl:ENSG00000204961|HPRD:07327|Vega:OTTHUMG00000163373 5 5q31 protocadherin alpha 9 protein-coding PCDHA9 protocadherin alpha 9 O KIAA0345-like 5|PCDH-alpha-9|protocadherin alpha-9 20121230 -9606 9753 ZSCAN12 - ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 HGNC:13172|MIM:603978|Ensembl:ENSG00000158691|HPRD:15767|Vega:OTTHUMG00000014522 6 6p21 zinc finger and SCAN domain containing 12 protein-coding ZSCAN12 zinc finger and SCAN domain containing 12 O zinc finger and SCAN domain-containing protein 12|zinc finger protein 305|zinc finger protein 96 20121230 -9606 9754 STARD8 - ARHGAP38|DLC3|STARTGAP3 HGNC:19161|MIM:300689|Ensembl:ENSG00000130052|HPRD:06730|Vega:OTTHUMG00000021748 X Xq13.1 StAR-related lipid transfer (START) domain containing 8 protein-coding STARD8 StAR-related lipid transfer (START) domain containing 8 O START domain containing 8|deleted in liver cancer 3 protein|stAR-related lipid transfer protein 8 20121230 -9606 9755 TBKBP1 - ProSAPiP2|SINTBAD HGNC:30140|MIM:608476|Ensembl:ENSG00000198933|HPRD:12239|Vega:OTTHUMG00000178286 17 17q21.32 TBK1 binding protein 1 protein-coding TBKBP1 TBK1 binding protein 1 O TANK-binding kinase 1-binding protein 1|TBK1-binding protein 1 20121230 -9606 9757 MLL4 - HRX2|KMT2B|MLL2|TRX2|WBP7 MIM:606834|Ensembl:ENSG00000105663|HPRD:06017|Vega:OTTHUMG00000048119 19 19q13.1 myeloid/lymphoid or mixed-lineage leukemia 4 protein-coding - - - KMT2D|WBP-7|WW domain binding protein 7|WW domain-binding protein 7|histone-lysine N-methyltransferase MLL4|lysine N-methyltransferase 2B|lysine N-methyltransferase 2D|mixed lineage leukemia gene homolog 2|myeloid/lymphoid or mixed-lineage leukemia protein 4|trithorax homolog 2|trithorax homologue 2 20121230 -9606 9758 FRMPD4 - PDZD10|PDZK10 HGNC:29007|MIM:300838|Ensembl:ENSG00000169933|HPRD:10011|Vega:OTTHUMG00000021138 X Xp22.2 FERM and PDZ domain containing 4 protein-coding FRMPD4 FERM and PDZ domain containing 4 O FERM and PDZ domain-containing protein 4|PDZ domain containing 10|PDZ domain-containing protein 10|PSD-95-interacting FERM and PDZ domain protein|PSD-95-interacting regulator of spine morphogenesis|Preso 20121230 -9606 9759 HDAC4 - AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA HGNC:14063|MIM:605314|Ensembl:ENSG00000068024|HPRD:05610|Vega:OTTHUMG00000133344 2 2q37.3 histone deacetylase 4 protein-coding HDAC4 histone deacetylase 4 O histone deacetylase A 20121230 -9606 9760 TOX - TOX1 HGNC:18988|MIM:606863|Ensembl:ENSG00000198846|HPRD:12113|Vega:OTTHUMG00000164331 8 8q12.1 thymocyte selection-associated high mobility group box protein-coding TOX thymocyte selection-associated high mobility group box O thymocyte selection-associated high mobility group box protein TOX|thymus high mobility group box protein TOX 20121230 -9606 9761 MLEC - KIAA0152 HGNC:28973|MIM:613802|Ensembl:ENSG00000110917|HPRD:13781|Vega:OTTHUMG00000169187 12 12q24.31 malectin protein-coding MLEC malectin O - 20121230 -9606 9762 PROSAPIP1 RP5-1187M17.10-001 LZTS3|RP5-1187M17.10 MIM:610484|Ensembl:ENSG00000088899|HPRD:11461|Vega:OTTHUMG00000031735 20 20p13 ProSAPiP1 protein protein-coding - - - ProSAP/Shank-interacting protein 1|proSAP-interacting protein 1|proline rich synapse associated protein interacting protein 1 20121230 -9606 9764 KIAA0513 - - HGNC:29058|MIM:611675|Ensembl:ENSG00000135709|HPRD:17192|Vega:OTTHUMG00000176597 16 16q24.1 KIAA0513 protein-coding KIAA0513 KIAA0513 O uncharacterized protein KIAA0513 20121230 -9606 9765 ZFYVE16 - ENDOFIN|PPP1R69 HGNC:20756|MIM:608880|Ensembl:ENSG00000039319|HPRD:10319|Vega:OTTHUMG00000108178 5 5q14 zinc finger, FYVE domain containing 16 protein-coding ZFYVE16 zinc finger, FYVE domain containing 16 O endosome-associated FYVE domain protein|endosome-associated FYVE-domain protein|protein phosphatase 1, regulatory subunit 69|zinc finger FYVE domain-containing protein 16 20121230 -9606 9766 KIAA0247 - - HGNC:19956|Ensembl:ENSG00000100647|HPRD:10010|Vega:OTTHUMG00000171234 14 14q24.1 KIAA0247 protein-coding KIAA0247 KIAA0247 O uncharacterized protein KIAA0247 20121230 -9606 9767 PHF16 - JADE3 HGNC:22982|MIM:300618|Ensembl:ENSG00000102221|HPRD:06675|Vega:OTTHUMG00000021431 X Xp11.23 PHD finger protein 16 protein-coding PHF16 PHD finger protein 16 O protein Jade-3 20121230 -9606 9768 KIAA0101 L5 NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|p15(PAF)|p15/PAF|p15PAF HGNC:28961|MIM:610696|Ensembl:ENSG00000166803|HPRD:13778|Vega:OTTHUMG00000133017 15 15q22.31 KIAA0101 protein-coding KIAA0101 KIAA0101 O HCV NS5A-transactivated protein 9|PCNA-associated factor|hepatitis C virus NS5A-transactivated protein 9|overexpressed in anaplastic thyroid carcinoma 1 20121230 -9606 9770 RASSF2 RP4-599I11.1 CENP-34|RASFADIN HGNC:9883|MIM:609492|Ensembl:ENSG00000101265|HPRD:15218|Vega:OTTHUMG00000031790 20 20p13 Ras association (RalGDS/AF-6) domain family member 2 protein-coding RASSF2 Ras association (RalGDS/AF-6) domain family member 2 O Ras association (RalGDS/AF-6) domain family 2|centromere protein 34|ras association domain-containing protein 2 20121230 -9606 9771 RAPGEF5 tcag7.1034 GFR|MR-GEF|REPAC HGNC:16862|MIM:609527|Ensembl:ENSG00000136237|HPRD:15208|Vega:OTTHUMG00000152525 7 7p15.3 Rap guanine nucleotide exchange factor (GEF) 5 protein-coding RAPGEF5 Rap guanine nucleotide exchange factor (GEF) 5 O M-Ras-regulated GEF|M-Ras-regulated Rap GEF|guanine nucleotide exchange factor for Rap1|rap guanine nucleotide exchange factor 5|related to Epac 20121230 -9606 9772 KIAA0195 - TMEM94 HGNC:28983|Ensembl:ENSG00000177728|HPRD:11068|Vega:OTTHUMG00000179611 17 17q25.1 KIAA0195 protein-coding KIAA0195 KIAA0195 O transmembrane protein 94|uncharacterized protein KIAA0195 20121230 -9606 9774 BCLAF1 - BTF|bK211L9.1 HGNC:16863|MIM:612588|Ensembl:ENSG00000029363|HPRD:16544|Vega:OTTHUMG00000033323 6 6q22-q23 BCL2-associated transcription factor 1 protein-coding BCLAF1 BCL2-associated transcription factor 1 O bcl-2-associated transcription factor 1 20121230 -9606 9775 EIF4A3 - DDX48|NMP265|NUK34|eIF4AIII HGNC:18683|MIM:608546|Ensembl:ENSG00000141543|HPRD:06482|Vega:OTTHUMG00000177538 17 17q25.3 eukaryotic translation initiation factor 4A3 protein-coding EIF4A3 eukaryotic translation initiation factor 4A3 O ATP-dependent RNA helicase DDX48|ATP-dependent RNA helicase eIF4A-3|DEAD (Asp-Glu-Ala-Asp) box polypeptide 48|DEAD box protein 48|NMP 265|eIF-4A-III|eIF4A-III|eukaryotic initiation factor 4A-III|eukaryotic initiation factor 4A-like NUK-34|eukaryotic translation initiation factor 4A|hNMP 265|nuclear matrix protein 265 20121230 -9606 9776 ATG13 - KIAA0652 HGNC:29091|Ensembl:ENSG00000175224|HPRD:13809|Vega:OTTHUMG00000166538 11 11p11.2 autophagy related 13 protein-coding ATG13 autophagy related 13 O ATG13 autophagy related 13 homolog|autophagy-related protein 13 20121230 -9606 9777 TM9SF4 RP5-836N17.2 dJ836N17.2 HGNC:30797|Ensembl:ENSG00000101337|HPRD:15514|Vega:OTTHUMG00000032206 20 20q11.21 transmembrane 9 superfamily protein member 4 protein-coding TM9SF4 transmembrane 9 superfamily protein member 4 O transmembrane 9 superfamily member 4 20121230 -9606 9778 KIAA0232 - - HGNC:28992|Ensembl:ENSG00000170871|HPRD:11070|Vega:OTTHUMG00000160072 4 4p16.1 KIAA0232 protein-coding KIAA0232 KIAA0232 O uncharacterized protein KIAA0232 20121230 -9606 9779 TBC1D5 - - HGNC:19166|Ensembl:ENSG00000131374|HPRD:10262|Vega:OTTHUMG00000155488 3 3p24.3 TBC1 domain family, member 5 protein-coding TBC1D5 TBC1 domain family, member 5 O TBC1 domain family member 5 20121230 -9606 9780 PIEZO1 - FAM38A|Mib HGNC:28993|MIM:611184|Ensembl:ENSG00000103335|HPRD:10945|Vega:OTTHUMG00000156776 16 16q24.3 piezo-type mechanosensitive ion channel component 1 protein-coding PIEZO1 piezo-type mechanosensitive ion channel component 1 O family with sequence similarity 38, member A|membrane protein induced by beta-amyloid treatment|protein PIEZO1 20121230 -9606 9781 RNF144A - RNF144|UBCE7IP4 HGNC:20457|Ensembl:ENSG00000151692|HPRD:11510|Vega:OTTHUMG00000090353 2 2p25.2 ring finger protein 144A protein-coding RNF144A ring finger protein 144A O UbcM4-interacting protein 4|probable E3 ubiquitin-protein ligase RNF144A|ubiquitin conjugating enzyme 7 interacting protein 4|ubiquitin-conjugating enzyme 7-interacting protein 4 20121230 -9606 9782 MATR3 - MPD2|VCPDM HGNC:6912|MIM:164015|Ensembl:ENSG00000015479|HPRD:05270|Vega:OTTHUMG00000129229 5 5q31.2 matrin 3 protein-coding MATR3 matrin 3 O matrin-3|vocal cord and pharyngeal weakness with distal myopathy 20121230 -9606 9783 RIMS3 RP4-739H11.2 NIM3|RIM3 HGNC:21292|MIM:611600|Ensembl:ENSG00000117016|HPRD:17976|Vega:OTTHUMG00000007453 1 1pter-p22.2 regulating synaptic membrane exocytosis 3 protein-coding RIMS3 regulating synaptic membrane exocytosis 3 O RIM 3|RIM3 gamma|Rab-3 interacting molecule 3|rab-3-interacting molecule 3|regulating synaptic membrane exocytosis protein 3 20121230 -9606 9784 SNX17 - - HGNC:14979|MIM:605963|Ensembl:ENSG00000115234|HPRD:05812|Vega:OTTHUMG00000097781 2 2p23-p22 sorting nexin 17 protein-coding SNX17 sorting nexin 17 O sorting nexin-17 20121230 -9606 9785 DHX38 - DDX38|PRP16|PRPF16 HGNC:17211|MIM:605584|Ensembl:ENSG00000140829|HPRD:05720|Vega:OTTHUMG00000137596 16 16q22 DEAH (Asp-Glu-Ala-His) box polypeptide 38 protein-coding DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 O ATP-dependent RNA helicase DHX38|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 38|DEAH box protein 38|PRP16 homolog of S.cerevisiae|pre-mRNA splicing factor ATP-dependent RNA helicase PRP16|pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 20121230 -9606 9786 KIAA0586 - Talpid3 HGNC:19960|MIM:610178|Ensembl:ENSG00000100578|HPRD:11092|Vega:OTTHUMG00000171141 14 14q23.1 KIAA0586 protein-coding KIAA0586 KIAA0586 O ortholog of chicken talpid{3}|uncharacterized protein KIAA0586 20121230 -9606 9787 DLGAP5 - DLG7|HURP HGNC:16864|Ensembl:ENSG00000126787|HPRD:06490|Vega:OTTHUMG00000140310 14 14q22.3 discs, large (Drosophila) homolog-associated protein 5 protein-coding DLGAP5 discs, large (Drosophila) homolog-associated protein 5 O DAP-5|discs large homolog 7|discs, large homolog 7|disks large-associated protein 5|disks large-associated protein DLG7|hepatoma up-regulated protein 20121230 -9606 9788 MTSS1 - MIM|MIMA|MIMB HGNC:20443|MIM:608486|Ensembl:ENSG00000170873|HPRD:12243|Vega:OTTHUMG00000048189 8 8p22 metastasis suppressor 1 protein-coding MTSS1 metastasis suppressor 1 O metastasis suppressor YGL-1|metastasis suppressor protein 1|missing in metastasis protein 20121230 -9606 9789 SPCS2 - - HGNC:28962|Ensembl:ENSG00000118363|HPRD:15435|Vega:OTTHUMG00000165517 11 11q13.4 signal peptidase complex subunit 2 homolog (S. cerevisiae) protein-coding SPCS2 signal peptidase complex subunit 2 homolog (S. cerevisiae) O SPase 25 kDa subunit|microsomal signal peptidase 25 kDa subunit|signal peptidase 25kDa subunit|signal peptidase complex subunit 2 20121230 -9606 9790 BMS1 AL022344.1 BMS1L HGNC:23505|MIM:611448|Ensembl:ENSG00000165733|HPRD:10689|Vega:OTTHUMG00000018020 10 10q11.21 BMS1 homolog, ribosome assembly protein (yeast) protein-coding BMS1 BMS1 homolog, ribosome assembly protein (yeast) O BMS1-like, ribosome assembly protein|ribosome assembly protein BMS1 homolog|ribosome biogenesis protein BMS1 homolog 20121230 -9606 9791 PTDSS1 - PSS1|PSSA HGNC:9587|MIM:612792|Ensembl:ENSG00000156471|HPRD:17926|Vega:OTTHUMG00000164687 8 8q22 phosphatidylserine synthase 1 protein-coding PTDSS1 phosphatidylserine synthase 1 O PSS-1|ptdSer synthase 1|serine-exchange enzyme I 20121230 -9606 9792 SERTAD2 - Sei-2|TRIP-Br2 HGNC:30784|Ensembl:ENSG00000179833|HPRD:18040|Vega:OTTHUMG00000152678 2 2p14 SERTA domain containing 2 protein-coding SERTAD2 SERTA domain containing 2 O SERTA domain-containing protein 2|transcriptional regulator interacting with the PHD-bromodomain 2|transcriptional regulator interacting with the PHS-bromodomain 2 20121230 -9606 9793 CKAP5 - CHTOG|MSPS|TOG|TOGp|ch-TOG HGNC:28959|MIM:611142|Ensembl:ENSG00000175216|HPRD:10830|Vega:OTTHUMG00000166599 11 11p11.2 cytoskeleton associated protein 5 protein-coding CKAP5 cytoskeleton associated protein 5 O colonic and hepatic tumor over-expressed gene protein|colonic and hepatic tumor overexpressed gene protein|cytoskeleton-associated protein 5 20121230 -9606 9794 MAML1 - Mam-1|Mam1 HGNC:13632|MIM:605424|Ensembl:ENSG00000161021|HPRD:05665|Vega:OTTHUMG00000163237 5 5q35 mastermind-like 1 (Drosophila) protein-coding MAML1 mastermind-like 1 (Drosophila) O mastermind homolog|mastermind-like protein 1 20121230 -9606 9796 PHYHIP - DYRK1AP3|PAHX-AP|PAHXAP1 HGNC:16865|MIM:608511|Ensembl:ENSG00000168490|HPRD:16345|Vega:OTTHUMG00000163776 8 8p21.3 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein O DYRK1A interacting protein 3|PAHX-AP1|phytanoyl-CoA alpha-hydroxylase associated protein|phytanoyl-CoA hydroxylase interacting protein|phytanoyl-CoA hydroxylase-associated protein 1|phytanoyl-CoA hydroxylase-interacting protein 20121230 -9606 9797 TATDN2 - - HGNC:28988|Ensembl:ENSG00000157014|HPRD:18712|Vega:OTTHUMG00000155361 3 3p25.3 TatD DNase domain containing 2 protein-coding TATDN2 TatD DNase domain containing 2 O putative deoxyribonuclease TATDN2 20121230 -9606 9798 IST1 - OLC1 HGNC:28977|Ensembl:ENSG00000182149|HPRD:13784|Vega:OTTHUMG00000137597 16 16q22.2 increased sodium tolerance 1 homolog (yeast) protein-coding IST1 increased sodium tolerance 1 homolog (yeast) O IST1 homolog|overexpressed in lung cancer 1|putative MAPK-activating protein PM28 20121230 -9606 9801 MRPL19 - L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 HGNC:14052|MIM:611832|Ensembl:ENSG00000115364|HPRD:11370|Vega:OTTHUMG00000129990 2 2p11.1-q11.2 mitochondrial ribosomal protein L19 protein-coding MRPL19 mitochondrial ribosomal protein L19 O 39S ribosomal protein L15, mitochondrial|39S ribosomal protein L19, mitochondrial|L15mt 20121230 -9606 9802 DAZAP2 - PRTB HGNC:2684|MIM:607431|Ensembl:ENSG00000183283|HPRD:08463|Vega:OTTHUMG00000169649 12 12q12 DAZ associated protein 2 protein-coding DAZAP2 DAZ associated protein 2 O DAZ-associated protein 2|deleted in azoospermia associated protein 2|deleted in azoospermia-associated protein 2|proline-rich transcript in brain|proline-rich transcript, brain-expressed protein 20121230 -9606 9804 TOMM20 RP4-597N16.2 MAS20|MOM19|TOM20 HGNC:20947|MIM:601848|Ensembl:ENSG00000173726|HPRD:03507|Vega:OTTHUMG00000039619 1 1q42 translocase of outer mitochondrial membrane 20 homolog (yeast) protein-coding TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) O mitochondrial 20 kDa outer membrane protein|mitochondrial import receptor subunit TOM20 homolog|outer mitochondrial membrane receptor Tom20|translocase of outer mitochondrial membrane 20 homolog type II 20121230 -9606 9805 SCRN1 - SES1 HGNC:22192|MIM:614965|Ensembl:ENSG00000136193|HPRD:15304|Vega:OTTHUMG00000097093 7 7p14.3-p14.1 secernin 1 protein-coding SCRN1 secernin 1 O secernin-1 20121230 -9606 9806 SPOCK2 UNQ269/PRO306 testican-2 HGNC:13564|MIM:607988|Ensembl:ENSG00000107742|HPRD:12146|Vega:OTTHUMG00000018430 10 10pter-q25.3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 O SPARC/osteonectin, CWCV, and Kazal-like domains proteoglycan 2|testican-2 20121230 -9606 9807 IP6K1 - IHPK1|PiUS HGNC:18360|MIM:606991|Ensembl:ENSG00000176095|HPRD:07379|Vega:OTTHUMG00000158197 3 3p21.31 inositol hexakisphosphate kinase 1 protein-coding IP6K1 inositol hexakisphosphate kinase 1 O ATP:1D-myo-inositol-hexakisphosphate phosphotransferase|Pi uptake stimulator|inositol hexaphosphate kinase 1|insP6 kinase 1 20121230 -9606 9808 KIAA0087 hCG_38390 - HGNC:22191 7 7p15.2 KIAA0087 miscRNA KIAA0087 KIAA0087 O - 20121230 -9606 9810 RNF40 - BRE1B|RBP95|STARING HGNC:16867|MIM:607700|Ensembl:ENSG00000103549|HPRD:07411|Vega:OTTHUMG00000132394 16 16p11.2-p11.1 ring finger protein 40, E3 ubiquitin protein ligase protein-coding RNF40 ring finger protein 40, E3 ubiquitin protein ligase O 95 kDa retinoblastoma protein binding protein|95 kDa retinoblastoma-associated protein|BRE1 E3 ubiquitin ligase homolog B|BRE1-B|E3 ubiquitin-protein ligase BRE1B|Rb-associated protein 20121230 -9606 9811 CTIF - Gm672|KIAA0427 HGNC:23925|MIM:613178|Ensembl:ENSG00000134030|HPRD:11083|Vega:OTTHUMG00000132656 18 18q21.1 CBP80/20-dependent translation initiation factor protein-coding CTIF CBP80/20-dependent translation initiation factor O - 20121230 -9606 9812 KIAA0141 - DELE HGNC:28969|Ensembl:ENSG00000081791|HPRD:13780|Vega:OTTHUMG00000129662 5 5q31.3 KIAA0141 protein-coding KIAA0141 KIAA0141 O death ligand signal enhancer 20121230 -9606 9813 EFCAB14 - KIAA0494|RP11-8J9.3 HGNC:29051|Ensembl:ENSG00000159658|HPRD:17191|Vega:OTTHUMG00000007992 1 1p33 EF-hand calcium binding domain 14 protein-coding EFCAB14 EF-hand calcium binding domain 14 O EF-hand domain-containing protein KIAA0494 20121230 -9606 9814 SFI1 RP5-858B16.1 PISD|hSfi1p HGNC:29064|MIM:612765|Ensembl:ENSG00000198089|HPRD:11550|Vega:OTTHUMG00000030249 22 22q12.2 Sfi1 homolog, spindle assembly associated (yeast) protein-coding SFI1 Sfi1 homolog, spindle assembly associated (yeast) O homolog of yeast Sfi1|protein SFI1 homolog 20121230 -9606 9815 GIT2 - CAT-2|CAT2 HGNC:4273|MIM:608564|Ensembl:ENSG00000139436|HPRD:09779|Vega:OTTHUMG00000169313 12 12q24.1 G protein-coupled receptor kinase interacting ArfGAP 2 protein-coding GIT2 G protein-coupled receptor kinase interacting ArfGAP 2 O ARF GAP GIT2|ARF GTPase-activating protein GIT2|G protein-coupled receptor kinase-interactor 2|GRK-interacting protein 2|cool-associated, tyrosine phosphorylated protein 2|cool-interacting tyrosine-phosphorylated protein 2 20121230 -9606 9816 URB2 RP11-108F13.1 KIAA0133|NET10|NPA2 HGNC:28967|Ensembl:ENSG00000135763|HPRD:17178|Vega:OTTHUMG00000039464 1 1q42.13 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) O nucleolar preribosomal-associated protein 1|unhealthy ribosome biogenesis protein 2 homolog 20121230 -9606 9817 KEAP1 - INrf2|KLHL19 HGNC:23177|MIM:606016|Ensembl:ENSG00000079999|HPRD:12079|Vega:OTTHUMG00000180579 19 19p13.2 kelch-like ECH-associated protein 1 protein-coding KEAP1 kelch-like ECH-associated protein 1 O cytosolic inhibitor of Nrf2|kelch-like protein 19 20121230 -9606 9818 NUPL1 RP11-206I15.1 PRO2463 HGNC:20261|MIM:607615|Ensembl:ENSG00000139496|HPRD:06355|Vega:OTTHUMG00000016608 13 13q12.13 nucleoporin like 1 protein-coding NUPL1 nucleoporin like 1 O nucleoporin p58/p45|nucleoporin-like protein 1 20121230 -9606 9819 TSC22D2 - TILZ4a|TILZ4b|TILZ4c HGNC:29095|Ensembl:ENSG00000196428|HPRD:11101|Vega:OTTHUMG00000159744 3 3q25.1 TSC22 domain family, member 2 protein-coding TSC22D2 TSC22 domain family, member 2 O TSC22 domain family 2|TSC22 domain family protein 2|TSC22-related-inducible leucine zipper protein 4 20121230 -9606 9820 CUL7 - KIAA0076|dJ20C7.5 HGNC:21024|MIM:609577|Ensembl:ENSG00000044090|HPRD:09901|Vega:OTTHUMG00000014718 6 6p21.1 cullin 7 protein-coding CUL7 cullin 7 O CUL-7|cullin-7 20121230 -9606 9821 RB1CC1 - CC1|FIP200 HGNC:15574|MIM:606837|Ensembl:ENSG00000023287|HPRD:06019|Vega:OTTHUMG00000164268 8 8q11 RB1-inducible coiled-coil 1 protein-coding RB1CC1 RB1-inducible coiled-coil 1 O 200 kDa FAK family kinase-interacting protein|FAK family kinase-interacting protein of 200 kDa|RB1-inducible coiled-coil protein 1 20121230 -9606 9823 ARMCX2 GHc-602D8.1 ALEX2 HGNC:16869|MIM:300363|Ensembl:ENSG00000184867|HPRD:02293|Vega:OTTHUMG00000022038 X Xq21.33-q22.2 armadillo repeat containing, X-linked 2 protein-coding ARMCX2 armadillo repeat containing, X-linked 2 O ARM protein lost in epithelial cancers on chromosome X 2|arm protein lost in epithelial cancers, X chromosome, 2|armadillo repeat protein ALEX2|armadillo repeat-containing X-linked protein 2 20121230 -9606 9824 ARHGAP11A - - HGNC:15783|MIM:610589|Ensembl:ENSG00000198826|HPRD:10656|Vega:OTTHUMG00000129289 15 15q13.2 Rho GTPase activating protein 11A protein-coding ARHGAP11A Rho GTPase activating protein 11A O GAP (1-12)|rho GTPase-activating protein 11A|rho-type GTPase-activating protein 11A 20121230 -9606 9825 SPATA2 - PD1|tamo HGNC:14681|MIM:607662|Ensembl:ENSG00000158480|HPRD:09636|Vega:OTTHUMG00000032704 20 20q13.13 spermatogenesis associated 2 protein-coding SPATA2 spermatogenesis associated 2 O spermatogenesis associated PD1|spermatogenesis-associated protein 2|spermatogenesis-associated protein PD1 20121230 -9606 9826 ARHGEF11 RP11-356J7.2 GTRAP48|PDZ-RHOGEF HGNC:14580|MIM:605708|Ensembl:ENSG00000132694|HPRD:09302|Vega:OTTHUMG00000041292 1 1q21 Rho guanine nucleotide exchange factor (GEF) 11 protein-coding ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 O Rho guanine exchange factor (GEF) 11|RhoA-specific guanine nucleotide exchange factor|RhoGEF glutamate transport modulator|glutamate transporter EAAT4-associated protein 48|rho guanine nucleotide exchange factor 11 20121230 -9606 9827 RGP1 - KIAA0258 HGNC:21965|Ensembl:ENSG00000107185|Vega:OTTHUMG00000019873 9 9pter-p22.1 RGP1 retrograde golgi transport homolog (S. cerevisiae) protein-coding RGP1 RGP1 retrograde golgi transport homolog (S. cerevisiae) O retrograde Golgi transport protein RGP1 homolog 20121230 -9606 9828 ARHGEF17 - P164RHOGEF|TEM4|p164-RhoGEF HGNC:21726|Ensembl:ENSG00000110237|HPRD:10658|Vega:OTTHUMG00000167971 11 11q13.4 Rho guanine nucleotide exchange factor (GEF) 17 protein-coding ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17 O 164 kDa Rho-specific guanine-nucleotide exchange factor|Rho-specific guanine-nucleotide exchange factor 164 kDa|rho guanine nucleotide exchange factor 17|tumor endothelial marker 4 20121230 -9606 9829 DNAJC6 - DJC6 HGNC:15469|MIM:608375|Ensembl:ENSG00000116675|HPRD:16326|Vega:OTTHUMG00000009066 1 1p31.3 DnaJ (Hsp40) homolog, subfamily C, member 6 protein-coding DNAJC6 DnaJ (Hsp40) homolog, subfamily C, member 6 O DnaJ (Hsp40) homolog, subfamily B, member 6|auxilin|dnaJ homolog subfamily C member 6|putative tyrosine-protein phosphatase auxilin 20121230 -9606 9830 TRIM14 - - HGNC:16283|MIM:606556|Ensembl:ENSG00000106785|HPRD:05948|Vega:OTTHUMG00000020339 9 9q22.33 tripartite motif containing 14 protein-coding TRIM14 tripartite motif containing 14 O tripartite motif protein TRIM14|tripartite motif-containing 14|tripartite motif-containing protein 14 20121230 -9606 9831 ZNF623 - - HGNC:29084|Ensembl:ENSG00000183309|HPRD:18358|Vega:OTTHUMG00000165186 8 8q24.3 zinc finger protein 623 protein-coding ZNF623 zinc finger protein 623 O - 20121230 -9606 9832 JAKMIP2 - JAMIP2|NECC1 HGNC:29067|MIM:611197|Ensembl:ENSG00000176049|HPRD:11090|Vega:OTTHUMG00000129731 5 5q32 janus kinase and microtubule interacting protein 2 protein-coding JAKMIP2 janus kinase and microtubule interacting protein 2 O CTCL tumor antigen HD-CL-04|Jak and microtubule interacting protein 2|janus kinase and microtubule-interacting protein 2|neuroendocrine long coiled-coil protein 1 20121230 -9606 9833 MELK RP11-8N6.1 HPK38 HGNC:16870|MIM:607025|Ensembl:ENSG00000165304|HPRD:06119|Vega:OTTHUMG00000019906 9 9p13.2 maternal embryonic leucine zipper kinase protein-coding MELK maternal embryonic leucine zipper kinase O pEg3 kinase|protein kinase Eg3|protein kinase PK38|tyrosine-protein kinase MELK 20121230 -9606 9834 KIAA0125 HSPC053 C14orf110|FAM30A HGNC:19955|HPRD:13779 14 14q32.33 KIAA0125 miscRNA KIAA0125 KIAA0125 O - 20121230 -9606 9836 LCMT2 - PPM2|TYW4 HGNC:17558|MIM:611246|Ensembl:ENSG00000168806|HPRD:17267|Vega:OTTHUMG00000130705 15 15q15.3 leucine carboxyl methyltransferase 2 protein-coding LCMT2 leucine carboxyl methyltransferase 2 O p21WAF1/CIP1 promoter-interacting protein|tRNA-Wybutosine-synthesizing protein 4|tRNA-yW synthesizing protein 4 20121230 -9606 9837 GINS1 RP4-691N24.2 PSF1 HGNC:28980|MIM:610608|Ensembl:ENSG00000101003|HPRD:11067|Vega:OTTHUMG00000032124 20 20p11.21 GINS complex subunit 1 (Psf1 homolog) protein-coding GINS1 GINS complex subunit 1 (Psf1 homolog) O DNA replication complex GINS protein PSF1|partner of sld five-1 20121230 -9606 9839 ZEB2 HRIHFB2411 HSPC082|SIP-1|SIP1|SMADIP1|ZFHX1B HGNC:14881|MIM:605802|Ensembl:ENSG00000169554|HPRD:05780|Vega:OTTHUMG00000131834 2 2q22.3 zinc finger E-box binding homeobox 2 protein-coding ZEB2 zinc finger E-box binding homeobox 2 O SMAD interacting protein 1|Smad-interacting protein 1|zinc finger E-box-binding homeobox 2|zinc finger homeobox 1b 20121230 -9606 9840 TESPA1 HSPC257 KIAA0748 HGNC:29109|Ensembl:ENSG00000135426|Vega:OTTHUMG00000165407 12 12q13.2 thymocyte expressed, positive selection associated 1 protein-coding TESPA1 thymocyte expressed, positive selection associated 1 O protein TESPA1|thymocyte-expressed positive selection-associated protein 1 20121230 -9606 9841 ZBTB24 - BIF1|ICF2|PATZ2|ZNF450 HGNC:21143|MIM:614064|Ensembl:ENSG00000112365|HPRD:18315|Vega:OTTHUMG00000015349 6 6q21 zinc finger and BTB domain containing 24 protein-coding ZBTB24 zinc finger and BTB domain containing 24 O POZ (BTB) and AT hook containing zinc finger 2|zinc finger and BTB domain-containing protein 24|zinc finger protein 450 20121230 -9606 9842 PLEKHM1 - AP162|B2|OPTB6 HGNC:29017|MIM:611466|Ensembl:ENSG00000225190|HPRD:11439|Vega:OTTHUMG00000179074 17 17q21.31 pleckstrin homology domain containing, family M (with RUN domain) member 1 protein-coding PLEKHM1 pleckstrin homology domain containing, family M (with RUN domain) member 1 O 162 kDa adapter protein|PH domain-containing family M member 1|pleckstrin homology domain-containing family M member 1 20121230 -9606 9843 HEPH RP13-238N7.1 CPL HGNC:4866|MIM:300167|Ensembl:ENSG00000089472|HPRD:02159|Vega:OTTHUMG00000021732 X Xq11-q12 hephaestin protein-coding HEPH hephaestin O - 20121230 -9606 9844 ELMO1 - CED-12|CED12|ELMO-1 HGNC:16286|MIM:606420|Ensembl:ENSG00000155849|HPRD:12102|Vega:OTTHUMG00000023701 7 7p14.1 engulfment and cell motility 1 protein-coding ELMO1 engulfment and cell motility 1 O ced-12 homolog 1|engulfment and cell motility protein 1 20121230 -9606 9846 GAB2 - - HGNC:14458|MIM:606203|Ensembl:ENSG00000033327|HPRD:05866|Vega:OTTHUMG00000166673 11 11q14.1 GRB2-associated binding protein 2 protein-coding GAB2 GRB2-associated binding protein 2 O GRB2-associated-binding protein 2|Grb2-associated binder 2|growth factor receptor bound protein 2-associated protein 2|pp100 20121230 -9606 9847 C2CD5 - CDP138|KIAA0528 HGNC:29062|Ensembl:ENSG00000111731|HPRD:11087|Vega:OTTHUMG00000169100 12 12p12.1 C2 calcium-dependent domain containing 5 protein-coding C2CD5 C2 calcium-dependent domain containing 5 O 138 kDa C2 domain-containing phosphoprotein|uncharacterized protein KIAA0528 20121230 -9606 9848 MFAP3L HSD39 NYD-sp9 HGNC:29083|Ensembl:ENSG00000198948|HPRD:14391|Vega:OTTHUMG00000160942 4 4q32.3 microfibrillar-associated protein 3-like protein-coding MFAP3L microfibrillar-associated protein 3-like O testis development protein NYD-SP9 20121230 -9606 9849 ZNF518A - ZNF518 HGNC:29009|HPRD:18349 10 10q24.1 zinc finger protein 518A protein-coding ZNF518A zinc finger protein 518A O zinc finger protein 518 20121230 -9606 9851 KIAA0753 - - HGNC:29110|Ensembl:ENSG00000198920|HPRD:11106|Vega:OTTHUMG00000177928 17 17p13.1 KIAA0753 protein-coding KIAA0753 KIAA0753 O uncharacterized protein KIAA0753 20121230 -9606 9852 EPM2AIP1 My007 - HGNC:19735|MIM:607911|Ensembl:ENSG00000178567|HPRD:07445 3 3p22.1 EPM2A (laforin) interacting protein 1 protein-coding EPM2AIP1 EPM2A (laforin) interacting protein 1 O EPM2A interacting protein 1|EPM2A-interacting protein 1|laforin-interacting protein 20121230 -9606 9853 RUSC2 - Iporin HGNC:23625|MIM:611053|Ensembl:ENSG00000198853|HPRD:18009|Vega:OTTHUMG00000019861 9 9p13.3 RUN and SH3 domain containing 2 protein-coding RUSC2 RUN and SH3 domain containing 2 O RUN and SH3 domain-containing protein 2|interacting protein of Rab1|iporin 20121230 -9606 9854 C2CD2L DLNB23 TMEM24 HGNC:29000|Ensembl:ENSG00000172375|HPRD:15533|Vega:OTTHUMG00000166167 11 11q23.3 C2CD2-like protein-coding C2CD2L C2CD2-like O C2 domain-containing protein 2-like|transmembrane protein 24 20121230 -9606 9855 FARP2 - FIR|FRG|PLEKHC3 HGNC:16460|Ensembl:ENSG00000006607|HPRD:16885|Vega:OTTHUMG00000151574 2 2q37.3 FERM, RhoGEF and pleckstrin domain protein 2 protein-coding FARP2 FERM, RhoGEF and pleckstrin domain protein 2 O FERM domain including RhoGEF|FERM, RhoGEF and pleckstrin domain-containing protein 2|FGD1-related Cdc42-GEF|PH domain-containing family C member 3|pleckstrin homology domain-containing family C member 3 20121230 -9606 9856 KIAA0319 - DYLX2|DYX2 HGNC:21580|MIM:609269|Ensembl:ENSG00000137261|HPRD:18713|Vega:OTTHUMG00000014358 6 6p22.3-p22.2 KIAA0319 protein-coding KIAA0319 KIAA0319 O dyslexia susceptibility 2|dyslexia-associated protein KIAA0319 20121230 -9606 9857 CEP350 RP11-502H18.1 CAP350|GM133 HGNC:24238|Ensembl:ENSG00000135837|HPRD:09870|Vega:OTTHUMG00000035269 1 1q25.2 centrosomal protein 350kDa protein-coding CEP350 centrosomal protein 350kDa O centrosome-associated protein 350 20121230 -9606 9858 PPP1R26 RP11-426A6.6 KIAA0649 HGNC:29089|MIM:614056|Ensembl:ENSG00000196422|HPRD:11099|Vega:OTTHUMG00000020904 9 9q34.3 protein phosphatase 1, regulatory subunit 26 protein-coding PPP1R26 protein phosphatase 1, regulatory subunit 26 O 1A6/DRIM (down-regulated in metastasis) interacting protein|DRIM/UTP20 interacting protein|protein phosphatase 1 regulatory subunit 26 20121230 -9606 9859 CEP170 - FAM68A|KAB|KIAA0470 HGNC:28920|MIM:613023|Ensembl:ENSG00000143702|HPRD:17172|Vega:OTTHUMG00000039862 1 1q44 centrosomal protein 170kDa protein-coding CEP170 centrosomal protein 170kDa O KARP-1-binding protein|XRCC5 binding protein|centrosomal protein of 170 kDa 20121230 -9606 9860 LRIG2 - LIG-2|LIG2 HGNC:20889|MIM:608869|Ensembl:ENSG00000198799|HPRD:12321|Vega:OTTHUMG00000012133 1 1p13.1 leucine-rich repeats and immunoglobulin-like domains 2 protein-coding LRIG2 leucine-rich repeats and immunoglobulin-like domains 2 O leucine-rich repeats and immunoglobulin-like domains protein 2 20121230 -9606 9861 PSMD6 - Rpn7|S10|SGA-113M|p42A|p44S10 HGNC:9564|Ensembl:ENSG00000163636|HPRD:18370|Vega:OTTHUMG00000158765 3 3p14.1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 protein-coding PSMD6 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 O 26S proteasome non-ATPase regulatory subunit 6|breast cancer-associated protein SGA-113M|phosphonoformate immuno-associated protein 4|proteasome regulatory particle subunit p44S10 20121230 -9606 9862 MED24 - ARC100|CRSP100|CRSP4|DRIP100|THRAP4|TRAP100 HGNC:22963|MIM:607000|Ensembl:ENSG00000008838|HPRD:06107|Vega:OTTHUMG00000133329 17 17q21.1 mediator complex subunit 24 protein-coding MED24 mediator complex subunit 24 O CRSP complex subunit 4|activator-recruited cofactor 100 kDa component|cofactor required for Sp1 transcriptional activation subunit 4|cofactor required for Sp1 transcriptional activation, subunit 4, 100kDa|mediator of RNA polymerase II transcription subunit 24|mediator of RNA polymerase II transcription, subunit 24 homolog|thyroid hormone receptor associated protein 4|thyroid hormone receptor-associated protein 4|thyroid hormone receptor-associated protein complex 100 kDa component|vitamin D3 receptor-interacting protein complex 100 kDa component|vitamin D3 receptor-interacting protein complex component DRIP100 20121230 -9606 9863 MAGI2 - ACVRIP1|AIP-1|AIP1|ARIP1|MAGI-2|SSCAM HGNC:18957|MIM:606382|Ensembl:ENSG00000187391|HPRD:16212|Vega:OTTHUMG00000130697 7 7q21 membrane associated guanylate kinase, WW and PDZ domain containing 2 protein-coding MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 O activin receptor interacting protein 1|atrophin-1-interacting protein 1|atrophin-1-interacting protein A|membrane-associated guanylate kinase inverted 2|membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2 20121230 -9606 9865 TRIL - - HGNC:22200|MIM:613356 7 7p14.3 TLR4 interactor with leucine-rich repeats protein-coding TRIL TLR4 interactor with leucine-rich repeats O TLR4 interactor with leucine rich repeats 20121230 -9606 9866 TRIM66 - C11orf29|TIF1D|TIF1DELTA HGNC:29005|MIM:612000|Ensembl:ENSG00000166436|Vega:OTTHUMG00000150481 11 11p15.4 tripartite motif containing 66 protein-coding TRIM66 tripartite motif containing 66 O transcriptional intermediary factor 1 delta|tripartite motif-containing 66|tripartite motif-containing protein 66 20121230 -9606 9867 PJA2 - Neurodap1|RNF131 HGNC:17481|Ensembl:ENSG00000198961|HPRD:11436|Vega:OTTHUMG00000128750 5 5q21.3 praja ring finger 2, E3 ubiquitin protein ligase protein-coding PJA2 praja ring finger 2, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase Praja-2|praja 2, RING-H2 motif containing|praja2|ring finger protein 131 20121230 -9606 9868 TOMM70A - - HGNC:11985|MIM:606081|Ensembl:ENSG00000154174|HPRD:16194|Vega:OTTHUMG00000159065 3 3q12.2 translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) protein-coding TOMM70A translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) O mitochondrial import receptor subunit TOM70|mitochondrial precursor proteins import receptor|translocase of outer membrane 70 kDa subunit 20121230 -9606 9869 SETDB1 RP11-316M1.1 ESET|H3-K9-HMTase4|KG1T|KMT1E HGNC:10761|MIM:604396|Ensembl:ENSG00000143379|HPRD:06828|Vega:OTTHUMG00000035003 1 1q21 SET domain, bifurcated 1 protein-coding SETDB1 SET domain, bifurcated 1 O ERG-associated protein with SET domain|ERG-associated protein with a SET domain, ESET|H3-K9-HMTase 4|histone H3-K9 methyltransferase 4|histone-lysine N-methyltransferase SETDB1|histone-lysine N-methyltransferase, H3lysine-9 specific 4|lysine N-methyltransferase 1E 20121230 -9606 9870 KIAA0317 - - HGNC:20363|Ensembl:ENSG00000119682|HPRD:13794|Vega:OTTHUMG00000154499 14 14q24.3 KIAA0317 protein-coding KIAA0317 KIAA0317 O protein KIAA0317 20121230 -9606 9871 SEC24D - - HGNC:10706|MIM:607186|Ensembl:ENSG00000150961|HPRD:06218|Vega:OTTHUMG00000132957 4 4q26 SEC24 family, member D (S. cerevisiae) protein-coding SEC24D SEC24 family, member D (S. cerevisiae) O SEC24 related gene family, member D|SEC24-related protein D|protein transport protein Sec24D 20121230 -9606 9873 FCHSD2 - NWK|SH3MD3 HGNC:29114|Ensembl:ENSG00000137478|HPRD:13321|Vega:OTTHUMG00000153082 11 11q13.4 FCH and double SH3 domains 2 protein-coding FCHSD2 FCH and double SH3 domains 2 O FCH and double SH3 domains protein 2|SH3 multiple domains 3|SH3 multiple domains protein 3|carom|nervous wreck homolog 20121230 -9606 9874 TLK1 - PKU-beta HGNC:11841|MIM:608438|Ensembl:ENSG00000198586|Vega:OTTHUMG00000132243 2 2q31.1 tousled-like kinase 1 protein-coding TLK1 tousled-like kinase 1 O SNARE protein kinase SNAK|serine threonine protein kinase|serine/threonine-protein kinase tousled-like 1 20121230 -9606 9875 URB1 - C21orf108|NPA1 HGNC:17344|MIM:608865|Ensembl:ENSG00000142207|Vega:OTTHUMG00000064919 21 21q22.11 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein-coding URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) O nucleolar pre-ribosomal-associated protein 1|nucleolar preribosomal-associated protein 1|nucleolar protein 254 kDa 20121230 -9606 9877 ZC3H11A - ZC3HDC11A HGNC:29093|MIM:613513|Ensembl:ENSG00000058673|HPRD:11100|Vega:OTTHUMG00000035909 1 1q32.1 zinc finger CCCH-type containing 11A protein-coding ZC3H11A zinc finger CCCH-type containing 11A O zinc finger CCCH domain-containing protein 11A|zinc finger CCCH-type domain containing 11A 20121230 -9606 9878 TOX4 - C14orf92|KIAA0737|LCP1|MIG7 HGNC:20161|MIM:614032|Ensembl:ENSG00000092203|HPRD:12661|Vega:OTTHUMG00000150278 14 14q11.2 TOX high mobility group box family member 4 protein-coding TOX4 TOX high mobility group box family member 4 O epidermal Langerhans cell protein LCP1|migration-inducing protein 7 20121230 -9606 9879 DDX46 - PRPF5|Prp5 HGNC:18681|Ensembl:ENSG00000145833|HPRD:10862|Vega:OTTHUMG00000163072 5 5q31.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein-coding DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 O DEAD box protein 46|PRP5 homolog|Prp5-like DEAD-box protein|RNA helicase|probable ATP-dependent RNA helicase DDX46 20121230 -9606 9880 ZBTB39 - ZNF922 HGNC:29014|Ensembl:ENSG00000166860|HPRD:13796|Vega:OTTHUMG00000171007 12 12q13.3 zinc finger and BTB domain containing 39 protein-coding ZBTB39 zinc finger and BTB domain containing 39 O zinc finger and BTB domain-containing protein 39 20121230 -9606 9881 TRANK1 - LBA1 HGNC:29011|Ensembl:ENSG00000168016 3 3p22.2 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 O TPR and ankyrin repeat-containing protein 1|lupus brain antigen 1 homolog 20121230 -9606 9882 TBC1D4 RP11-159J2.3 AS160 HGNC:19165|MIM:612465|Ensembl:ENSG00000136111|HPRD:18164|Vega:OTTHUMG00000017088 13 13q22.2 TBC1 domain family, member 4 protein-coding TBC1D4 TBC1 domain family, member 4 O Acrg embryonic lethality minimal region ortholog|TBC (Tre-2, BUB2, CDC16) domain-containing protein|TBC1 domain family member 4|akt substrate of 160 kDa 20121230 -9606 9883 POM121 - P145|POM121A HGNC:19702|Ensembl:ENSG00000196313|HPRD:11448|Vega:OTTHUMG00000023527 7 7q11.23 POM121 transmembrane nucleoporin protein-coding POM121 POM121 transmembrane nucleoporin O POM121 membrane glycoprotein|nuclear envelope pore membrane protein POM 121|nuclear envelope pore membrane protein POM 121A|nuclear pore membrane protein 121 kDa|nucleoporin Nup121|pore membrane protein of 121 kDa 20121230 -9606 9884 LRRC37A - - HGNC:29069|Ensembl:ENSG00000176681|HPRD:14303|Vega:OTTHUMG00000149841 17 17q21.31 leucine rich repeat containing 37A protein-coding LRRC37A leucine rich repeat containing 37A O leucine-rich repeat-containing protein 37A 20121230 -9606 9885 OSBPL2 RP11-157P1.2 ORP-2|ORP2 HGNC:15761|MIM:606731|Ensembl:ENSG00000130703|HPRD:09473|Vega:OTTHUMG00000032909 20 20q13.3 oxysterol binding protein-like 2 protein-coding OSBPL2 oxysterol binding protein-like 2 O OSBP-related protein 2|oxysterol-binding protein-like 2|oxysterol-binding protein-related protein 2 20121230 -9606 9886 RHOBTB1 - - HGNC:18738|MIM:607351|Ensembl:ENSG00000072422|HPRD:06299|Vega:OTTHUMG00000018292 10 10q21.2 Rho-related BTB domain containing 1 protein-coding RHOBTB1 Rho-related BTB domain containing 1 O rho-related BTB domain-containing protein 1 20121230 -9606 9887 SMG7 RP1-127C7.1 C1orf16|EST1C|SGA56M HGNC:16792|MIM:610964|Ensembl:ENSG00000116698|HPRD:10723|Vega:OTTHUMG00000035221 1 1q25 smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding SMG7 smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) O EST1 telomerase component homolog C|EST1-like protein C|breast cancer-associated antigen SGA-56M|ever shorter telomeres 1C|protein SMG7 20121230 -9606 9889 ZBED4 - - HGNC:20721|MIM:612552|Ensembl:ENSG00000100426|HPRD:11692|Vega:OTTHUMG00000150291 22 22q13.33 zinc finger, BED-type containing 4 protein-coding ZBED4 zinc finger, BED-type containing 4 O zinc finger BED domain-containing protein 4|zinc finger, BED domain containing 4 20121230 -9606 9890 LPPR4 - LPR4|PHP1|PRG-1|PRG1|RP4-788L13.1 MIM:607813|Ensembl:ENSG00000117600|HPRD:07425|Vega:OTTHUMG00000010763 1 1p21.2 lipid phosphate phosphatase-related protein type 4 protein-coding - - - brain-specific phosphatidic acid phosphatase-like protein 1|plasticity related gene 1|plasticity-related gene 1 protein 20121230 -9606 9891 NUAK1 - ARK5 HGNC:14311|MIM:608130|Ensembl:ENSG00000074590|HPRD:12171|Vega:OTTHUMG00000169763 12 12q23.3 NUAK family, SNF1-like kinase, 1 protein-coding NUAK1 NUAK family, SNF1-like kinase, 1 O AMP-activated protein kinase family member 5|AMPK-related protein kinase 5|NUAK family SNF1-like kinase 1|omphalocele kinase 1 20121230 -9606 9892 SNAP91 RP1-120N9.1 AP180|CALM HGNC:14986|MIM:607923|Ensembl:ENSG00000065609|HPRD:06391|Vega:OTTHUMG00000015114 6 6q14.2 synaptosomal-associated protein, 91kDa protein-coding SNAP91 synaptosomal-associated protein, 91kDa O 91 kDa synaptosomal-associated protein|assembly protein, 180kDa|clathrin coat assembly protein AP180|clathrin coat-associated protein AP180|phosphoprotein F1-20|synaptosomal-associated protein, 91kDa homolog 20121230 -9606 9894 TELO2 - CLK2|TEL2 HGNC:29099|MIM:611140|Ensembl:ENSG00000100726|HPRD:10016|Vega:OTTHUMG00000044471 16 16p13.3 TEL2, telomere maintenance 2, homolog (S. cerevisiae) protein-coding TELO2 TEL2, telomere maintenance 2, homolog (S. cerevisiae) O protein clk-2 homolog|telomere length regulation protein TEL2 homolog 20121230 -9606 9895 TECPR2 - KIAA0329 HGNC:19957|MIM:615000|Ensembl:ENSG00000196663|HPRD:17184|Vega:OTTHUMG00000171776 14 14q32.31 tectonin beta-propeller repeat containing 2 protein-coding TECPR2 tectonin beta-propeller repeat containing 2 O tectonin beta-propeller repeat-containing protein 2 20121230 -9606 9896 FIG4 RP1-249I4.1 ALS11|CMT4J|KIAA0274|SAC3|dJ249I4.1 HGNC:16873|MIM:609390|Ensembl:ENSG00000112367|HPRD:11073|Vega:OTTHUMG00000015352 6 6q21 FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae) protein-coding FIG4 FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae) O FIG4 homolog, SAC domain containing lipid phosphatase|FIG4 homolog, SAC1 domain containing lipid phosphatase|SAC domain-containing protein 3|Sac domain-containing inositol phosphatase 3|phosphatidylinositol 3,5-bisphosphate 5-phosphatase|polyphosphoinositide phosphatase 20121230 -9606 9897 KIAA0196 - SPG8 HGNC:28984|MIM:610657|Ensembl:ENSG00000164961|HPRD:13786|Vega:OTTHUMG00000164991 8 8q24.13 KIAA0196 protein-coding KIAA0196 KIAA0196 O WASH complex subunit strumpellin|strumpellin 20121230 -9606 9898 UBAP2L RP11-205M9.4 NICE-4 HGNC:29877|Ensembl:ENSG00000143569|HPRD:06665|Vega:OTTHUMG00000035983 1 1q21.3 ubiquitin associated protein 2-like protein-coding UBAP2L ubiquitin associated protein 2-like O protein NICE-4|ubiquitin-associated protein 2-like 20121230 -9606 9899 SV2B - HsT19680 HGNC:16874|MIM:185861|Ensembl:ENSG00000185518|HPRD:11765|Vega:OTTHUMG00000149833 15 15q26.1 synaptic vesicle glycoprotein 2B protein-coding SV2B synaptic vesicle glycoprotein 2B O synaptic vesicle protein 2B homolog 20121230 -9606 9900 SV2A PSEC0174 SV2 HGNC:20566|MIM:185860|Ensembl:ENSG00000159164|HPRD:08922|Vega:OTTHUMG00000012209 1 1q21.2 synaptic vesicle glycoprotein 2A protein-coding SV2A synaptic vesicle glycoprotein 2A O - 20121230 -9606 9901 SRGAP3 - ARHGAP14|MEGAP|SRGAP2|WRP HGNC:19744|MIM:606525|Ensembl:ENSG00000196220|HPRD:12108|Vega:OTTHUMG00000090589 3 3p25.3 SLIT-ROBO Rho GTPase activating protein 3 protein-coding SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 O SLIT-ROBO Rho GTPase activating protein 2|SLIT-ROBO Rho GTPase-activating protein 3|WAVE-associated Rac GTPase activating protein|mental disorder-associated GAP|rho GTPase-activating protein 14 20121230 -9606 9902 MRC2 - CD280|CLEC13E|ENDO180|UPARAP HGNC:16875|MIM:612264|Ensembl:ENSG00000011028|HPRD:10094|Vega:OTTHUMG00000179178 17 17q23.2 mannose receptor, C type 2 protein-coding MRC2 mannose receptor, C type 2 O C-type lectin domain family 13 member E|C-type mannose receptor 2|UPAR-associated protein|endocytic receptor (macrophage mannose receptor family)|endocytic receptor 180|macrophage mannose receptor 2|urokinase-type plasminogen activator receptor-associated protein 20121230 -9606 9903 KLHL21 - - HGNC:29041|Ensembl:ENSG00000162413|HPRD:17239|Vega:OTTHUMG00000001437 1 1p36.31 kelch-like 21 (Drosophila) protein-coding KLHL21 kelch-like 21 (Drosophila) O kelch-like protein 21 20121230 -9606 9904 RBM19 - - HGNC:29098|Ensembl:ENSG00000122965|HPRD:15225|Vega:OTTHUMG00000169646 12 12q24.21 RNA binding motif protein 19 protein-coding RBM19 RNA binding motif protein 19 O RNA-binding motif protein 19|probable RNA-binding protein 19 20121230 -9606 9905 SGSM2 - RUTBC1 HGNC:29026|MIM:611418|Ensembl:ENSG00000141258|HPRD:15284|Vega:OTTHUMG00000177637 17 17p13.3 small G protein signaling modulator 2 protein-coding SGSM2 small G protein signaling modulator 2 O RUN and TBC1 domain containing 1|RUN and TBC1 domain-containing protein 1|small G protein signaling modulator 2 protein 20121230 -9606 9906 SLC35E2 RP1-283E3.5 - HGNC:20863|Ensembl:ENSG00000215790|HPRD:15374|Vega:OTTHUMG00000000823 1 1p36.33 solute carrier family 35, member E2 protein-coding SLC35E2 solute carrier family 35, member E2 O solute carrier family 35 member E2 20121230 -9606 9907 AP5Z1 tcag7.1310 KIAA0415|SPG48|zeta HGNC:22197|MIM:613653|Ensembl:ENSG00000242802|Vega:OTTHUMG00000151754 7 7p22.2 adaptor-related protein complex 5, zeta 1 subunit protein-coding AP5Z1 adaptor-related protein complex 5, zeta 1 subunit O AP-5 complex subunit zeta-1|adapter-related protein complex 5 zeta subunit|zeta5 20121230 -9606 9908 G3BP2 - - HGNC:30291|Ensembl:ENSG00000138757|HPRD:06570|Vega:OTTHUMG00000130097 4 4q21.1 GTPase activating protein (SH3 domain) binding protein 2 protein-coding G3BP2 GTPase activating protein (SH3 domain) binding protein 2 O G3BP-2|GAP SH3 domain-binding protein 2|Ras-GTPase activating protein SH3 domain-binding protein 2|ras GTPase-activating protein-binding protein 2 20121230 -9606 9909 DENND4B hCG_18235 KIAA0476 HGNC:29044|Ensembl:ENSG00000198837|Vega:OTTHUMG00000037157 1 1q21 DENN/MADD domain containing 4B protein-coding DENND4B DENN/MADD domain containing 4B O DENN domain-containing protein 4B 20121230 -9606 9910 RABGAP1L RP1-102G20.1 HHL|TBC1D18 HGNC:24663|MIM:609238|Ensembl:ENSG00000152061|HPRD:16464|Vega:OTTHUMG00000034899 1 1q24 RAB GTPase activating protein 1-like protein-coding RABGAP1L RAB GTPase activating protein 1-like O TBC1 domain family, member 18|expressed in hematopoietic cells, heart, liver (HLL)|rab GTPase-activating protein 1-like 20121230 -9606 9911 TMCC2 UNQ6409 HUCEP11 HGNC:24239|Ensembl:ENSG00000133069|HPRD:11040|Vega:OTTHUMG00000037195 1 1q32.1 transmembrane and coiled-coil domain family 2 protein-coding TMCC2 transmembrane and coiled-coil domain family 2 O cerebral protein 11|transmembrane and coiled-coil domains 2|transmembrane and coiled-coil domains protein 2 20121230 -9606 9912 ARHGAP44 - NPC-A-10|RICH2 HGNC:29096|Ensembl:ENSG00000006740|HPRD:13810|Vega:OTTHUMG00000058765 17 17p12 Rho GTPase activating protein 44 protein-coding ARHGAP44 Rho GTPase activating protein 44 O RICH-2|Rho-type GTPase-activating protein RICH2|RhoGAP interacting with CIP4 homologs protein 2|rho GTPase-activating protein 44|rho GTPase-activating protein RICH2 20121230 -9606 9913 SUPT7L - SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H HGNC:30632|MIM:612762|Ensembl:ENSG00000119760|HPRD:18115|Vega:OTTHUMG00000151947 2 2p23.3 suppressor of Ty 7 (S. cerevisiae)-like protein-coding SUPT7L suppressor of Ty 7 (S. cerevisiae)-like O SPTF-associated factor 65 gamma|STAF65gamma|STAGA complex 65 gamma subunit|STAGA complex 65 subunit gamma|adenocarcinoma antigen ART1|suppressor of Ty 7-like 20121230 -9606 9914 ATP2C2 - SPCA2 HGNC:29103|MIM:613082|Ensembl:ENSG00000064270|HPRD:13812|Vega:OTTHUMG00000176737 16 16q24.1 ATPase, Ca++ transporting, type 2C, member 2 protein-coding ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 O ATPase 2C2|calcium-transporting ATPase type 2C member 2|secretory pathway Ca(2+)-ATPase 2|secretory pathway calcium ATPase 2 20121230 -9606 9915 ARNT2 - bHLHe1 HGNC:16876|MIM:606036|Ensembl:ENSG00000172379|Vega:OTTHUMG00000165478 15 15q24 aryl-hydrocarbon receptor nuclear translocator 2 protein-coding ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 O ARNT protein 2|aryl hydrocarbon receptor nuclear translocator 2|class E basic helix-loop-helix protein 1 20121230 -9606 9917 FAM20B RP11-177A2.1 gxk1 HGNC:23017|MIM:611063|Ensembl:ENSG00000116199|HPRD:13297|Vega:OTTHUMG00000035073 1 1q25 family with sequence similarity 20, member B protein-coding FAM20B family with sequence similarity 20, member B O glycosaminoglycan xylosylkinase|xylose kinase 20121230 -9606 9918 NCAPD2 - CAP-D2|CNAP1|hCAP-D2 HGNC:24305|Ensembl:ENSG00000010292|HPRD:06472|Vega:OTTHUMG00000168513 12 12p13.3 non-SMC condensin I complex, subunit D2 protein-coding NCAPD2 non-SMC condensin I complex, subunit D2 O XCAP-D2 homolog|chromosome condensation related SMC associated protein 1|chromosome condensation-related SMC-associated protein 1|chromosome-associated protein D2|condensin complex subunit 1 20121230 -9606 9919 SEC16A RP11-413M3.10-002 KIAA0310|RP11-413M3.10|SEC16L|p250 HGNC:29006|MIM:612854|Ensembl:ENSG00000148396|Vega:OTTHUMG00000020932 9 9q34.3 SEC16 homolog A (S. cerevisiae) protein-coding SEC16A SEC16 homolog A (S. cerevisiae) O protein SEC16 homolog A|protein transport protein Sec16A 20121230 -9606 9920 KBTBD11 - KLHDC7C HGNC:29104|Ensembl:ENSG00000176595|HPRD:17195|Vega:OTTHUMG00000163629 8 8p23.3 kelch repeat and BTB (POZ) domain containing 11 protein-coding KBTBD11 kelch repeat and BTB (POZ) domain containing 11 O chronic myelogenous leukemia-associated protein|kelch domain-containing protein 7B|kelch repeat and BTB domain-containing protein 11 20121230 -9606 9921 RNF10 - RIE2 HGNC:10055|Ensembl:ENSG00000022840|HPRD:11496|Vega:OTTHUMG00000168999 12 12q24.31 ring finger protein 10 protein-coding RNF10 ring finger protein 10 O RING finger protein 10 20121230 -9606 9922 IQSEC1 - ARF-GEP100|ARFGEP100|BRAG2|GEP100 HGNC:29112|MIM:610166|Ensembl:ENSG00000144711|HPRD:11052|Vega:OTTHUMG00000155398 3 3p25.2 IQ motif and Sec7 domain 1 protein-coding IQSEC1 IQ motif and Sec7 domain 1 O ADP-ribosylation factors guanine nucleotide-exchange protein 100|ADP-ribosylation factors guanine nucleotide-exchange protein 2|IQ motif and SEC7 domain-containing protein 1|brefeldin A-resistant ARF-GEF2|brefeldin-resistant Arf-GEF 2 protein 20121230 -9606 9923 ZBTB40 - ZNF923 HGNC:29045|MIM:612106|Ensembl:ENSG00000184677|HPRD:11086|Vega:OTTHUMG00000002897 1 1p36 zinc finger and BTB domain containing 40 protein-coding ZBTB40 zinc finger and BTB domain containing 40 O zinc finger and BTB domain-containing protein 40 20121230 -9606 9924 PAN2 - USP52 HGNC:20074|Ensembl:ENSG00000135473|HPRD:15640|Vega:OTTHUMG00000170412 12 12q13.2 PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) protein-coding PAN2 PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) O PAB-dependent poly(A)-specific ribonuclease subunit 2|PABP-dependent poly(A) nuclease 2|PAN2 polyA specific ribonuclease subunit|inactive ubiquitin carboxyl-terminal hydrolase 52|ubiquitin specific peptidase 52|ubiquitin specific protease 52 20121230 -9606 9925 ZBTB5 RP11-397D12.5 - HGNC:23836|Ensembl:ENSG00000168795|HPRD:08829|Vega:OTTHUMG00000019918 9 9p13.2 zinc finger and BTB domain containing 5 protein-coding ZBTB5 zinc finger and BTB domain containing 5 O zinc finger and BTB domain-containing protein 5 20121230 -9606 9926 LPGAT1 - FAM34A|FAM34A1|NET8 HGNC:28985|MIM:610473|Ensembl:ENSG00000123684|HPRD:14304|Vega:OTTHUMG00000037120 1 1q32 lysophosphatidylglycerol acyltransferase 1 protein-coding LPGAT1 lysophosphatidylglycerol acyltransferase 1 O acyl-CoA:lysophosphatidylglycerol acyltransferase 1|family with sequence similarity 34, member A 20121230 -9606 9927 MFN2 RP5-1077B9.3 CMT2A|CMT2A2|CPRP1|HSG|MARF HGNC:16877|MIM:608507|Ensembl:ENSG00000116688|HPRD:08495|Vega:OTTHUMG00000002392 1 1p36.22 mitofusin 2 protein-coding MFN2 mitofusin 2 O hyperplasia suppressor|mitochondrial assembly regulatory factor|mitofusin-2|transmembrane GTPase MFN2 20121230 -9606 9928 KIF14 - - HGNC:19181|MIM:611279|Ensembl:ENSG00000118193|HPRD:06605|Vega:OTTHUMG00000035723 1 1q32.1 kinesin family member 14 protein-coding KIF14 kinesin family member 14 O kinesin-like protein KIF14 20121230 -9606 9929 JOSD1 RP3-508I15.17-002 dJ508I15.2 HGNC:28953|Ensembl:ENSG00000100221|HPRD:08823|Vega:OTTHUMG00000151030 22 22q13.1 Josephin domain containing 1 protein-coding JOSD1 Josephin domain containing 1 O Josephin-1|josephin domain-containing 1 20121230 -9606 9931 HELZ - DHRC|DRHC|HUMORF5 HGNC:16878|MIM:606699|Ensembl:ENSG00000198265|HPRD:10452|Vega:OTTHUMG00000179555 17 17q24.2 helicase with zinc finger protein-coding HELZ helicase with zinc finger O down-regulated in human cancers protein|helicase with zinc finger domain|probable helicase with zinc finger domain 20121230 -9606 9933 KIAA0020 RP11-526D20.2 HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A HGNC:29676|MIM:609960|Ensembl:ENSG00000080608|HPRD:08822|Vega:OTTHUMG00000019450 9 9p24.2 KIAA0020 protein-coding KIAA0020 KIAA0020 O HBV X-transactivated gene 5 protein|HBV XAg-transactivated protein 5|minor histocompatibility antigen HA-8|penguin homolog|protein 5 transactivated by hepatitis B virus X antigen (HBxAg)|pumilio domain-containing protein KIAA0020 20121230 -9606 9934 P2RY14 - GPR105|P2Y14 HGNC:16442|MIM:610116|Ensembl:ENSG00000174944|HPRD:08820|Vega:OTTHUMG00000159859 3 3q24-q25.1 purinergic receptor P2Y, G-protein coupled, 14 protein-coding P2RY14 purinergic receptor P2Y, G-protein coupled, 14 O G protein coupled receptor for UDP-glucose|G protein-coupled receptor 105|G-protein coupled receptor 105|P2Y purinoceptor 14|P2Y(14) receptor|P2Y14 receptor|UDP-glucose receptor 20121230 -9606 9935 MAFB - KRML|MCTO HGNC:6408|MIM:608968|Ensembl:ENSG00000204103|HPRD:07129|Vega:OTTHUMG00000033052 20 20q11.2-q13.1 v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) protein-coding MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) O Kreisler maf-related leucine zipper homolog|MAFB/Kreisler basic region/leucine zipper transcription factor|transcription factor MafB 20121230 -9606 9936 CD302 - BIMLEC|CLEC13A|DCL-1|DCL1 HGNC:30843|MIM:612246|Ensembl:ENSG00000241399|HPRD:09906|Vega:OTTHUMG00000154080 2 2q24.2 CD302 molecule protein-coding CD302 CD302 molecule O C-type lectin domain family 13, member A|CD302 antigen|DEC205-associated C-type lectin 1|type I transmembrane C-type lectin receptor DCL-1 20121230 -9606 9937 DCLRE1A - PSO2|SNM1|SNM1A HGNC:17660|MIM:609682|Ensembl:ENSG00000198924|HPRD:08519|Vega:OTTHUMG00000019077 10 10q25.1 DNA cross-link repair 1A protein-coding DCLRE1A DNA cross-link repair 1A O DNA cross-link repair 1A protein|DNA-crosslink repair gene SNM1|SNM1 homolog A 20121230 -9606 9938 ARHGAP25 - KAIA0053 HGNC:28951|MIM:610587|Ensembl:ENSG00000163219|HPRD:09805|Vega:OTTHUMG00000152621 2 2p13.3 Rho GTPase activating protein 25 protein-coding ARHGAP25 Rho GTPase activating protein 25 O rho GTPase-activating protein 25|rho-type GTPase-activating protein 25 20121230 -9606 9939 RBM8A HSPC114 BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 HGNC:9905|MIM:605313|Ensembl:ENSG00000131795|HPRD:05609|Vega:OTTHUMG00000013736 1 1q21.1 RNA binding motif protein 8A protein-coding RBM8A RNA binding motif protein 8A O BOV-1|RNA binding motif protein 8B|RNA-binding motif protein 8A|RNA-binding protein 8A|RNA-binding protein Y14|binder of OVCA1-1|ribonucleoprotein RBM8|ribonucleoprotein RBM8A 20121230 -9606 9940 DLEC1 - DLC1|F56 HGNC:2899|MIM:604050|Ensembl:ENSG00000008226|HPRD:07234|Vega:OTTHUMG00000131085 3 3p21.3 deleted in lung and esophageal cancer 1 protein-coding DLEC1 deleted in lung and esophageal cancer 1 O DLC-1|deleted in lung and esophageal cancer 1 transcript varient 2|deleted in lung and esophageal cancer protein 1 20121230 -9606 9941 EXOG - ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB HGNC:3347|MIM:604051|Ensembl:ENSG00000157036|HPRD:06813|Vega:OTTHUMG00000131295 3 3p21.3 endo/exonuclease (5'-3'), endonuclease G-like protein-coding EXOG endo/exonuclease (5'-3'), endonuclease G-like O endo G-like 1|endonuclease G-like 1|endonuclease G-like 2|nuclease EXOG, mitochondrial 20121230 -9606 9942 XYLB - - HGNC:12839|MIM:604049|Ensembl:ENSG00000093217|HPRD:06812|Vega:OTTHUMG00000131294 3 3p22-p21.3 xylulokinase homolog (H. influenzae) protein-coding XYLB xylulokinase homolog (H. influenzae) O xylulose kinase 20121230 -9606 9943 OXSR1 - OSR1 HGNC:8508|MIM:604046|Ensembl:ENSG00000172939|HPRD:06809|Vega:OTTHUMG00000131084 3 3p22.2 oxidative-stress responsive 1 protein-coding OXSR1 oxidative-stress responsive 1 O oxidative stress-responsive 1 protein|serine/threonine-protein kinase OSR1 20121230 -9606 9945 GFPT2 - GFAT2 HGNC:4242|MIM:603865|Ensembl:ENSG00000131459|HPRD:04842|Vega:OTTHUMG00000163442 5 5q34-q35 glutamine-fructose-6-phosphate transaminase 2 protein-coding GFPT2 glutamine-fructose-6-phosphate transaminase 2 O D-fructose-6-phosphate amidotransferase 2|GFAT 2|glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2|glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2|glutamine: fructose-6-phosphate aminotransferase 2|glutamine:fructose 6 phosphate amidotransferase 2|glutamine:fructose-6-phosphate amidotransferase 2|hexosephosphate aminotransferase 2 20121230 -9606 9946 CRYZL1 - 4P11|QOH-1 HGNC:2420|MIM:603920|Ensembl:ENSG00000205758|HPRD:06797|Vega:OTTHUMG00000065954 21 21q21.3 crystallin, zeta (quinone reductase)-like 1 protein-coding CRYZL1 crystallin, zeta (quinone reductase)-like 1 O protein 4P11|quinone oxidoreductase homolog 1|quinone oxidoreductase-like protein 1|quinone reductase-like 1|zeta-crystallin homolog 20121230 -9606 9947 MAGEC1 RP6-232G24.1 CT7|CT7.1 HGNC:6812|MIM:300223|Ensembl:ENSG00000155495|HPRD:02201|Vega:OTTHUMG00000022569 X Xq26 melanoma antigen family C, 1 protein-coding MAGEC1 melanoma antigen family C, 1 O MAGE-C1 antigen|cancer/testis antigen 7.1|cancer/testis antigen family 7, member 1|melanoma-associated antigen C1 20121230 -9606 9948 WDR1 - AIP1|NORI-1 HGNC:12754|MIM:604734|Ensembl:ENSG00000071127|HPRD:09199|Vega:OTTHUMG00000160253 4 4p16.1 WD repeat domain 1 protein-coding WDR1 WD repeat domain 1 O WD repeat-containing protein 1|actin-interacting protein 1 20121230 -9606 9949 AMMECR1 RP13-360B22.1 AMMERC1 HGNC:467|MIM:300195|Ensembl:ENSG00000101935|HPRD:02182|Vega:OTTHUMG00000022197 X Xq22.3 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding AMMECR1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 O AMME syndrome candidate gene 1 protein 20121230 -9606 9950 GOLGA5 PIG31 GOLIM5|RFG5|ret-II HGNC:4428|MIM:606918|Ensembl:ENSG00000066455|HPRD:06079|Vega:OTTHUMG00000171217 14 14q32.12 golgin A5 protein-coding GOLGA5 golgin A5 O Golgin subfamily A member 5|RET-fused gene 5 protein|cell proliferation-inducing gene 31 protein|golgi autoantigen, golgin subfamily a, 5|golgi integral membrane protein 5|golgin-84 20121230 -9606 9951 HS3ST4 - 3-OST-4|30ST4|3OST4|h3-OST-4 HGNC:5200|MIM:604059|Ensembl:ENSG00000182601|HPRD:04960|Vega:OTTHUMG00000059978 16 16p11.2 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 protein-coding HS3ST4 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 O heparan sulfate 3-O-sulfotransferase 4|heparan sulfate 3-O-sulfotransferase-4|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4|heparan sulfate glucosamine 3-O-sulfotransferase 4 20121230 -9606 9953 HS3ST3B1 - 30ST3B1|3OST3B1 HGNC:5198|MIM:604058|Ensembl:ENSG00000125430|HPRD:04959|Vega:OTTHUMG00000058810 17 17p12 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 protein-coding HS3ST3B1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 O 3-OST-3B|h3-OST-3B|heparan sulfate 3-O-sulfotransferase 3B1|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1|heparan sulfate glucosamine 3-O-sulfotransferase 3B1 20121230 -9606 9955 HS3ST3A1 UNQ2551/PRO6180 30ST3A1|3OST3A1 HGNC:5196|MIM:604057|Ensembl:ENSG00000153976|HPRD:04958|Vega:OTTHUMG00000058768 17 17p12 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 protein-coding HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 O 3-OST-3A|h3-OST-3A|heparan sulfate 3-O-sulfotransferase 3A1|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1|heparan sulfate glucosamine 3-O-sulfotransferase 3A1|heparin-glucosamine 3-O-sulfotransferase 20121230 -9606 9956 HS3ST2 UNQ2442/PRO5004 30ST2|3OST2 HGNC:5195|MIM:604056|Ensembl:ENSG00000122254|HPRD:04957|Vega:OTTHUMG00000094785 16 16p12 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 protein-coding HS3ST2 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 O 3-OST-2|h3-OST-2|heparan sulfate 3-O-sulfotransferase 2|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2|heparan sulfate glucosamine 3-O-sulfotransferase 2|heparin-glucosamine 3-O-sulfotransferase 20121230 -9606 9957 HS3ST1 - 3OST|3OST1 HGNC:5194|MIM:603244|Ensembl:ENSG00000002587|HPRD:04455|Vega:OTTHUMG00000090547 4 4p16 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 protein-coding HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 O 3-OST-1|h3-OST-1|heparan sulfate 3-O-sulfotransferase 1|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1|heparan sulfate glucosamine 3-O-sulfotransferase 1|heparin-glucosamine 3-O-sulfotransferase 20121230 -9606 9958 USP15 - UNPH-2|UNPH4 HGNC:12613|MIM:604731|Ensembl:ENSG00000135655|HPRD:05293|Vega:OTTHUMG00000170186 12 12q14 ubiquitin specific peptidase 15 protein-coding USP15 ubiquitin specific peptidase 15 O deubiquitinating enzyme 15|ubiquitin carboxyl-terminal hydrolase 15|ubiquitin thioesterase 15|ubiquitin thiolesterase 15|ubiquitin-specific-processing protease 15 20121230 -9606 9959 USP12P1 - UBH1|USP12 HGNC:12610|MIM:603091 5 5q33-q34 ubiquitin specific peptidase 12 pseudogene 1 pseudo USP12P1 ubiquitin specific peptidase 12 pseudogene 1 O - 20121230 -9606 9960 USP3 - SIH003|UBP HGNC:12626|MIM:604728|Ensembl:ENSG00000140455|HPRD:05290|Vega:OTTHUMG00000172309 15 15q22.3 ubiquitin specific peptidase 3 protein-coding USP3 ubiquitin specific peptidase 3 O deubiquitinating enzyme 3|ubiquitin carboxyl-terminal hydrolase 3|ubiquitin thioesterase 3|ubiquitin thiolesterase 3|ubiquitin-specific-processing protease 3 20121230 -9606 9961 MVP - LRP|VAULT1 HGNC:7531|MIM:605088|Ensembl:ENSG00000013364|HPRD:05475|Vega:OTTHUMG00000048227 16 16p11.2 major vault protein protein-coding MVP major vault protein O lung resistance-related protein 20121230 -9606 9962 SLC23A2 RP1-237C24.1 NBTL1|SLC23A1|SVCT2|YSPL2 HGNC:10973|MIM:603791|Ensembl:ENSG00000089057|HPRD:04811|Vega:OTTHUMG00000031793 20 20p13 solute carrier family 23 (nucleobase transporters), member 2 protein-coding SLC23A2 solute carrier family 23 (nucleobase transporters), member 2 O Na(+)/L-ascorbic acid transporter 2|hSVCT2|nucleobase transporter-like 1 protein|sodium-dependent vitamin C transporter-2|solute carrier family 23 (nucleobase transporters), member 1|solute carrier family 23 member 2|yolk sac permease-like molecule 2 20121230 -9606 9963 SLC23A1 - SLC23A2|SVCT1|YSPL3 HGNC:10974|MIM:603790|Ensembl:ENSG00000170482|HPRD:04810|Vega:OTTHUMG00000129228 5 5q31.2 solute carrier family 23 (nucleobase transporters), member 1 protein-coding SLC23A1 solute carrier family 23 (nucleobase transporters), member 1 O Na(+)/L-ascorbic acid transporter 1|hSVCT1|sodium-dependent vitamin C transporter 1|sodium-dependent vitamin C transporter-1|solute carrier family 23 (nucleobase transporters), member 2|solute carrier family 23 member 1|yolk sac permease-like molecule 3 20121230 -9606 9964 MYCL3 - - HGNC:7557 X Xq27.2 v-myc myelocytomatosis viral oncogene homolog 3 (avian) (pseudogene) pseudo MYCL3 v-myc myelocytomatosis viral oncogene homolog 3 (avian) (pseudogene) O - 20121230 -9606 9965 FGF19 UNQ334/PRO533 - HGNC:3675|MIM:603891|Ensembl:ENSG00000162344|HPRD:04868|Vega:OTTHUMG00000167886 11 11q13.1 fibroblast growth factor 19 protein-coding FGF19 fibroblast growth factor 19 O FGF-19 20121230 -9606 9966 TNFSF15 - TL1|TL1A|VEGI|VEGI192A HGNC:11931|MIM:604052|Ensembl:ENSG00000181634|HPRD:04956|Vega:OTTHUMG00000021011 9 9q32 tumor necrosis factor (ligand) superfamily, member 15 protein-coding TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 O TNF ligand-related molecule 1|TNF superfamily ligand TL1A|tumor necrosis factor ligand superfamily member 15|vascular endothelial cell growth inhibitor|vascular endothelial growth inhibitor-192A 20121230 -9606 9967 THRAP3 - TRAP150 HGNC:22964|MIM:603809|Ensembl:ENSG00000054118|HPRD:07543|Vega:OTTHUMG00000007866 1 1p34.3 thyroid hormone receptor associated protein 3 protein-coding THRAP3 thyroid hormone receptor associated protein 3 O thyroid hormone receptor-associated protein 3|thyroid hormone receptor-associated protein complex 150 kDa component|thyroid hormone receptor-associated protein, 150 kDa subunit 20121230 -9606 9968 MED12 - ARC240|CAGH45|FGS1|HOPA|MED12S|OKS|OPA1|TNRC11|TRAP230 HGNC:11957|MIM:300188|Ensembl:ENSG00000184634|HPRD:02176|Vega:OTTHUMG00000021788 X Xq13 mediator complex subunit 12 protein-coding MED12 mediator complex subunit 12 O CAG repeat protein 45|OPA-containing protein|activator-recruited cofactor 240 kDa component|human opposite paired|mediator of RNA polymerase II transcription subunit 12|mediator of RNA polymerase II transcription, subunit 12 homolog|putative mediator subunit 12|thyroid hormone receptor-associated protein complex 230 kDa component|thyroid hormone receptor-associated protein, 230 kDa subunit|trinucleotide repeat containing 11 (THR-associated protein, 230 kDa subunit)|trinucleotide repeat-containing gene 11 protein 20121230 -9606 9969 MED13 - ARC250|DRIP250|HSPC221|THRAP1|TRAP240 HGNC:22474|MIM:603808|Ensembl:ENSG00000108510|HPRD:07229|Vega:OTTHUMG00000179251 17 17q22-q23 mediator complex subunit 13 protein-coding MED13 mediator complex subunit 13 O activator-recruited cofactor 250 kDa component|mediator of RNA polymerase II transcription subunit 13|mediator of RNA polymerase II transcription, subunit 13 homolog|thyroid hormone receptor associated protein 1|thyroid hormone receptor-associated protein 1|thyroid hormone receptor-associated protein complex 240 kDa component|thyroid hormone receptor-associated protein complex component TRAP240|thyroid hormone receptor-associated protein, 240 kDa subunit|vitamin D3 receptor-interacting protein complex component DRIP250 20121230 -9606 9970 NR1I3 - CAR|CAR1|MB67 HGNC:7969|MIM:603881|Ensembl:ENSG00000143257|HPRD:04858|Vega:OTTHUMG00000034347 1 1q23.3 nuclear receptor subfamily 1, group I, member 3 protein-coding NR1I3 nuclear receptor subfamily 1, group I, member 3 O constitutive activator of retinoid response|constitutive active receptor|constitutive active response|constitutive androstane nuclear receptor variant 2|constitutive androstane nuclear receptor variant 3|constitutive androstane nuclear receptor variant 4|constitutive androstane nuclear receptor variant 5|constitutive androstane receptor|nuclear receptor subfamily 1 group I member 3|orphan nuclear hormone receptor|orphan nuclear receptor MB67 20121230 -9606 9971 NR1H4 - BAR|FXR|HRR-1|HRR1|RIP14 HGNC:7967|MIM:603826|Ensembl:ENSG00000012504|HPRD:04827|Vega:OTTHUMG00000170359 12 12q23.1 nuclear receptor subfamily 1, group H, member 4 protein-coding NR1H4 nuclear receptor subfamily 1, group H, member 4 O RXR-interacting protein 14|bile acid receptor|farnesoid X nuclear receptor|farnesoid X-activated receptor|farnesol receptor HRR-1|retinoid X receptor-interacting protein 14 20121230 -9606 9972 NUP153 - HNUP153|N153 HGNC:8062|MIM:603948|Ensembl:ENSG00000124789|HPRD:04899|Vega:OTTHUMG00000014312 6 6p22.3 nucleoporin 153kDa protein-coding NUP153 nucleoporin 153kDa O 153 kDa nucleoporin|nuclear pore complex protein Nup153|nuclear pore complex protein hnup153|nucleoporin Nup153 20121230 -9606 9973 CCS - - HGNC:1613|MIM:603864|Ensembl:ENSG00000173992|HPRD:04841|Vega:OTTHUMG00000167238 11 11q13 copper chaperone for superoxide dismutase protein-coding CCS copper chaperone for superoxide dismutase O superoxide dismutase copper chaperone 20121230 -9606 9975 NR1D2 - BD73|EAR-1R|RVR HGNC:7963|MIM:602304|Ensembl:ENSG00000174738|HPRD:03809|Vega:OTTHUMG00000155659 3 3p24.2 nuclear receptor subfamily 1, group D, member 2 protein-coding NR1D2 nuclear receptor subfamily 1, group D, member 2 O V-erbA-related protein 1-related|nuclear receptor Rev-ErbA beta variant 1|nuclear receptor Rev-ErbA beta variant 2|nuclear receptor subfamily 1 group D member 2|orphan nuclear hormone receptor BD73|rev-erb-beta|rev-erba-alpha-related receptor 20121230 -9606 9976 CLEC2B - AICL|CLECSF2|HP10085|IFNRG1 HGNC:2053|MIM:603242|Ensembl:ENSG00000110852|HPRD:09129|Vega:OTTHUMG00000168483 12 12p13-p12 C-type lectin domain family 2, member B protein-coding CLEC2B C-type lectin domain family 2, member B O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 2 (activation-induced)|C-type lectin domain family 2 member B|C-type lectin superfamily member 2|IFN-alpha-2b-inducing-related protein 1|IFN-alpha2b-inducing related protein 1|activation-induced C-type lectin 20121230 -9606 9978 RBX1 RP11-554C12.1 BA554C12.1|RNF75|ROC1 HGNC:9928|MIM:603814|Ensembl:ENSG00000100387|HPRD:06794|Vega:OTTHUMG00000151298 22 22q13.2 ring-box 1, E3 ubiquitin protein ligase protein-coding RBX1 ring-box 1, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RBX1|RING box protein 1|RING finger protein 75|RING-box protein 1|ZYP protein|regulator of cullins 1 20121230 -9606 9980 DOPEY2 - 21orf5|C21orf5 HGNC:1291|MIM:604803|Ensembl:ENSG00000142197|HPRD:07271|Vega:OTTHUMG00000086619 21 21q22.2 dopey family member 2 protein-coding DOPEY2 dopey family member 2 O homolog of yeast DOP1|protein dopey-2 20121230 -9606 9982 FGFBP1 - FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 HGNC:19695|MIM:607737|Ensembl:ENSG00000137440|HPRD:06371|Vega:OTTHUMG00000097745 4 4p15.32 fibroblast growth factor binding protein 1 protein-coding FGFBP1 fibroblast growth factor binding protein 1 O 17 kDa HBGF-binding protein|17 kDa heparin-binding growth factor-binding protein|FGF-binding protein 1|fibroblast growth factor-binding protein 1|heparin-binding growth factor binding protein 20121230 -9606 9984 THOC1 - HPR1|P84|P84N5 HGNC:19070|MIM:606930|Ensembl:ENSG00000079134|HPRD:09498|Vega:OTTHUMG00000178051 18 18p11.32 THO complex 1 protein-coding THOC1 THO complex 1 O THO complex subunit 1|hTREX84|nuclear matrix protein p84|tho1 20121230 -9606 9985 REC8 - HR21spB|REC8L1|Rec8p HGNC:16879|MIM:608193|Ensembl:ENSG00000100918|HPRD:09739|Vega:OTTHUMG00000171916 14 14q11.2-q12 REC8 homolog (yeast) protein-coding REC8 REC8 homolog (yeast) O REC8-like 1|cohesin Rec8p|cohesion rec8p|human homolog of rad21, S. pombe|meiotic recombination and sister chromatid cohesion phosphoprotein of the rad21p family|meiotic recombination protein REC8 homolog|meiotic recombination protein REC8-like 1|recombination and sister chromatid cohesion protein homolog 20121230 -9606 9986 RCE1 - FACE2|RCE1A|RCE1B HGNC:13721|MIM:605385|Ensembl:ENSG00000173653|HPRD:07289|Vega:OTTHUMG00000167098 11 11q13 RCE1 homolog, prenyl protein protease (S. cerevisiae) protein-coding RCE1 RCE1 homolog, prenyl protein protease (S. cerevisiae) O CAAX prenyl protease 2|RCE1 homolog, prenyl protein peptidase|farnesylated protein-converting enzyme 2|farnesylated proteins-converting enzyme 2|prenyl protein-specific endoprotease 2 20121230 -9606 9987 HNRPDL - HNRNP|JKTBP|JKTBP2|laAUF1 HGNC:5037|MIM:607137|Ensembl:ENSG00000152795|HPRD:06185|Vega:OTTHUMG00000130299 4 4q21.22 heterogeneous nuclear ribonucleoprotein D-like protein-coding HNRPDL heterogeneous nuclear ribonucleoprotein D-like O A+U-rich element RNA binding factor|AU-rich element RNA-binding factor|JKT41-binding protein|hnRNP D-like|hnRNP DL|protein laAUF1 20121230 -9606 9988 DMTF1 - DMP1|DMTF|hDMP1 HGNC:14603|MIM:608491|Ensembl:ENSG00000135164|HPRD:09770|Vega:OTTHUMG00000154135 7 7q21 cyclin D binding myb-like transcription factor 1 protein-coding DMTF1 cyclin D binding myb-like transcription factor 1 O cyclin D-binding Myb-like protein|cyclin-D-binding Myb-like transcription factor 1|cyclin-D-interacting Myb-like protein 1|hDMTF1 20121230 -9606 9989 PPP4R1 - MEG1|PP4(Rmeg)|PP4R1 HGNC:9320|MIM:604908|Ensembl:ENSG00000154845|Vega:OTTHUMG00000137466 18 18p11.22 protein phosphatase 4, regulatory subunit 1 protein-coding PPP4R1 protein phosphatase 4, regulatory subunit 1 O serine/threonine phosphatase 4|serine/threonine-protein phosphatase 4 regulatory subunit 1 20121230 -9606 9990 SLC12A6 - ACCPN|KCC3|KCC3A|KCC3B HGNC:10914|MIM:604878|Ensembl:ENSG00000140199|HPRD:09220|Vega:OTTHUMG00000129441 15 15q13 solute carrier family 12 (potassium/chloride transporters), member 6 protein-coding SLC12A6 solute carrier family 12 (potassium/chloride transporters), member 6 O K-Cl cotransporter 3|electroneutral potassium-chloride cotransporter 3|potassium chloride cotransporter 3|potassium chloride cotransporter KCC3a-S3|potassium-chloride transporter-3a|potassium-chloride transporter-3b|solute carrier family 12 member 6 20121230 -9606 9991 PTBP3 RP11-165N19.1 ROD1 HGNC:10253|MIM:607527|Ensembl:ENSG00000119314|HPRD:09603|Vega:OTTHUMG00000020503 9 9q32 polypyrimidine tract binding protein 3 protein-coding PTBP3 polypyrimidine tract binding protein 3 O ROD1 regulator of differentiation 1|fission yeast differentiation regulator|polypyrimidine tract-binding protein 3|regulator of differentiation 1 20121230 -9606 9992 KCNE2 - ATFB4|LQT5|LQT6|MIRP1 HGNC:6242|MIM:603796|Ensembl:ENSG00000159197|HPRD:04813|Vega:OTTHUMG00000086189 21 21q22.12 potassium voltage-gated channel, Isk-related family, member 2 protein-coding KCNE2 potassium voltage-gated channel, Isk-related family, member 2 O cardiac voltage-gated potassium channel accessory subunit 2|minK-related peptide 1|minK-related peptide-1|minimum potassium ion channel-related peptide 1|potassium channel subunit beta MiRP1|potassium channel subunit, MiRP1|potassium voltage-gated channel subfamily E member 2|voltage-gated K+ channel subunit MIRP1 20121230 -9606 9993 DGCR2 - DGS-C|IDD|LAN|SEZ-12 HGNC:2845|MIM:600594|Ensembl:ENSG00000070413|HPRD:08999|Vega:OTTHUMG00000150141 22 22q11.21 DiGeorge syndrome critical region gene 2 protein-coding DGCR2 DiGeorge syndrome critical region gene 2 O DiGeorge syndrome critical region protein 2|integral membrane protein DGCR2/IDD|integral membrane protein deleted in DiGeorge syndrome 20121230 -9606 9994 CASP8AP2 RP11-63K6.3 CED-4|FLASH|RIP25 HGNC:1510|MIM:606880|HPRD:06048 6 6q15 caspase 8 associated protein 2 protein-coding CASP8AP2 caspase 8 associated protein 2 O CASP8 associated protein 2|CASP8-associated protein 2|FLASH homolog RIP25|FLICE associated huge|FLICE-associated huge protein|human FLASH 20121230 -9606 9995 ELK2BP - ELK2.2|ELK2P2 HGNC:3324 14 14q32.33 ELK2B, member of ETS oncogene family, pseudogene pseudo ELK2BP ELK2B, member of ETS oncogene family, pseudogene O - 20121230 -9606 9997 SCO2 - SCO1L HGNC:10604|MIM:604272|Ensembl:ENSG00000130489|HPRD:05042|Vega:OTTHUMG00000150251 22 22q13.33 SCO2 cytochrome c oxidase assembly protein protein-coding SCO2 SCO2 cytochrome c oxidase assembly protein O SCO cytochrome oxidase deficient homolog 2|cytochrome oxidase deficient homolog 2|protein SCO2 homolog, mitochondrial 20121230 -9606 10000 AKT3 - MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 HGNC:393|MIM:611223|Ensembl:ENSG00000117020|HPRD:06441|Vega:OTTHUMG00000039994 1 1q44 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) protein-coding AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) O PKB gamma|RAC-gamma serine/threonine protein kinase|RAC-gamma serine/threonine-protein kinase 20121230 -9606 10001 MED6 - NY-REN-28 HGNC:19970|MIM:602984|Ensembl:ENSG00000133997|HPRD:04284|Vega:OTTHUMG00000171252 14 14q24.2 mediator complex subunit 6 protein-coding MED6 mediator complex subunit 6 O ARC33|activator-recruited cofactor 33 kDa component|hMed6|mediator of RNA polymerase II transcription subunit 6|mediator of RNA polymerase II transcription, subunit 6 homolog|renal carcinoma antigen NY-REN-28 20121230 -9606 10002 NR2E3 - ESCS|PNR|RNR|RP37|rd7 HGNC:7974|MIM:604485|HPRD:05132 15 15q22.32 nuclear receptor subfamily 2, group E, member 3 protein-coding NR2E3 nuclear receptor subfamily 2, group E, member 3 O photoreceptor cell-specific nuclear receptor variant 1|photoreceptor-specific nuclear receptor|retina-specific nuclear receptor 20121230 -9606 10003 NAALAD2 - GCPIII|GPCIII|NAADALASE2|NAALADASE2 HGNC:14526|MIM:611636|Ensembl:ENSG00000077616|HPRD:07494|Vega:OTTHUMG00000166368 11 11q14.3-q21 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding NAALAD2 N-acetylated alpha-linked acidic dipeptidase 2 O N-acetylated alpha-linked acidic dipeptidase II|N-acetylated-alpha-linked acidic dipeptidase 2|N-acetylated-alpha-linked acidic dipeptidase II|NAALADase II|glutamate carboxypeptidase III 20121230 -9606 10004 NAALADL1 - I100|NAALADASEL HGNC:23536|MIM:602640|Ensembl:ENSG00000168060|HPRD:07212|Vega:OTTHUMG00000165595 11 11q12 N-acetylated alpha-linked acidic dipeptidase-like 1 protein-coding NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1 O 100 kDa ileum brush border membrane protein|N-acetylated-alpha-linked acidic dipeptidase-like protein|NAALADase L|ileal dipeptidylpeptidase|ileal peptidase I100 20121230 -9606 10005 ACOT8 RP3-337O18.2 HNAACTE|PTE-1|PTE-2|PTE1|PTE2|hACTE-III|hTE HGNC:15919|MIM:608123|Ensembl:ENSG00000101473|HPRD:06998|Vega:OTTHUMG00000033045 20 20q13.12 acyl-CoA thioesterase 8 protein-coding ACOT8 acyl-CoA thioesterase 8 O HIV-Nef associated acyl-CoA thioesterase|acyl-coenzyme A thioesterase 8|choloyl-CoA hydrolase|choloyl-coenzyme A thioesterase|long-chain fatty-acyl-CoA hydrolase|palmitoyl-CoA hydrolase|peroxisomal acyl-CoA thioesterase 1|peroxisomal acyl-coenzyme A thioester hydrolase 1|peroxisomal long-chain acyl-CoA thioesterase 1|thioesterase II|thioesterase III 20121230 -9606 10006 ABI1 RP13-16H11.4 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 HGNC:11320|MIM:603050|Ensembl:ENSG00000136754|HPRD:04336|Vega:OTTHUMG00000017848 10 10p11.2 abl-interactor 1 protein-coding ABI1 abl-interactor 1 O Abelson interactor 1|Abl-interactor protein 1 long|abl interactor 1|abl-binding protein 4|eps8 SH3 domain-binding protein|interactor protein AblBP4|nap1 binding protein|spectrin SH3 domain-binding protein 1 20121230 -9606 10007 GNPDA1 - GNP1|GNPDA|GNPI|GPI|HLN HGNC:4417|MIM:601798|Ensembl:ENSG00000113552|HPRD:09048|Vega:OTTHUMG00000129657 5 5q21 glucosamine-6-phosphate deaminase 1 protein-coding GNPDA1 glucosamine-6-phosphate deaminase 1 O GNPDA 1|glcN6P deaminase 1|glucosamine-6-phosphate isomerase 1|oscillin 20121230 -9606 10008 KCNE3 - HOKPP|HYPP|MiRP2 HGNC:6243|MIM:604433|Ensembl:ENSG00000175538|HPRD:07256|Vega:OTTHUMG00000165641 11 11q13.4 potassium voltage-gated channel, Isk-related family, member 3 protein-coding KCNE3 potassium voltage-gated channel, Isk-related family, member 3 O cardiac voltage-gated potassium channel accessory subunit|minK-related peptide 2|minimum potassium ion channel-related peptide 2|potassium channel subunit beta MiRP2|potassium voltage-gated channel subfamily E member 3|voltage-gated K+ channel subunit MIRP2 20121230 -9606 10009 ZBTB33 - ZNF-kaiso|ZNF348 HGNC:16682|MIM:300329|Ensembl:ENSG00000177485|HPRD:02269|Vega:OTTHUMG00000171159 X Xq23 zinc finger and BTB domain containing 33 protein-coding ZBTB33 zinc finger and BTB domain containing 33 O WUGSC:H_DJ525N14.1|kaiso transcription factor|transcriptional regulator Kaiso|zinc finger and BTB domain-containing protein 33 20121230 -9606 10010 TANK - I-TRAF|TRAF2 HGNC:11562|MIM:603893|Ensembl:ENSG00000136560|HPRD:04870|Vega:OTTHUMG00000132037 2 2q24-q31 TRAF family member-associated NFKB activator protein-coding TANK TRAF family member-associated NFKB activator O TRAF family member-associated NF-kappa-B activator|TRAF-interacting protein 20121230 -9606 10011 SRA1 PP7684 SRA|SRAP|STRAA1|pp7684 HGNC:11281|MIM:603819|Ensembl:ENSG00000213523|HPRD:18716|Vega:OTTHUMG00000163569 5 5q31.3 steroid receptor RNA activator 1 protein-coding SRA1 steroid receptor RNA activator 1 O steroid receptor RNA activator 1 (complexes with NCOA1)|steroid receptor RNA activator protein|steroid receptor coactivator 20121230 -9606 10013 HDAC6 JM21 HD6 HGNC:14064|MIM:300272|Ensembl:ENSG00000094631|HPRD:02228|Vega:OTTHUMG00000034496 X Xp11.23 histone deacetylase 6 protein-coding HDAC6 histone deacetylase 6 O - 20121230 -9606 10014 HDAC5 - HD5|NY-CO-9 HGNC:14068|MIM:605315|Ensembl:ENSG00000108840|HPRD:09246|Vega:OTTHUMG00000181806 17 17q21 histone deacetylase 5 protein-coding HDAC5 histone deacetylase 5 O antigen NY-CO-9 20121230 -9606 10015 PDCD6IP - AIP1|ALIX|DRIP4|HP95 HGNC:8766|MIM:608074|Ensembl:ENSG00000170248|HPRD:06425|Vega:OTTHUMG00000130751 3 3p22.3 programmed cell death 6 interacting protein protein-coding PDCD6IP programmed cell death 6 interacting protein O ALG-2 interacting protein 1|PDCD6-interacting protein|apoptosis-linked gene 2-interacting protein X|dopamine receptor interacting protein 4|programmed cell death 6-interacting protein 20121230 -9606 10016 PDCD6 - ALG-2|PEF1B HGNC:8765|MIM:601057|Ensembl:ENSG00000249915|HPRD:03035|Vega:OTTHUMG00000090283 5 5p15.33 programmed cell death 6 protein-coding PDCD6 programmed cell death 6 O apoptosis-linked gene 2 protein|probable calcium-binding protein ALG-2|programmed cell death protein 6 20121230 -9606 10017 BCL2L10 - BCL-B|Boo|Diva HGNC:993|MIM:606910|Ensembl:ENSG00000137875|HPRD:06071|Vega:OTTHUMG00000131893 15 15q21 BCL2-like 10 (apoptosis facilitator) protein-coding BCL2L10 BCL2-like 10 (apoptosis facilitator) O anti-apoptotic protein NrH|apoptosis regulator Bcl-B|bcl-2-like protein 10|bcl2-L-10 20121230 -9606 10018 BCL2L11 - BAM|BIM|BOD HGNC:994|MIM:603827|Ensembl:ENSG00000153094|HPRD:04828|Vega:OTTHUMG00000131256 2 2q13 BCL2-like 11 (apoptosis facilitator) protein-coding BCL2L11 BCL2-like 11 (apoptosis facilitator) O bcl-2 interacting mediator of cell death|bcl-2 interacting protein Bim|bcl-2-like protein 11|bcl-2-related ovarian death agonist|bcl2-L-11 20121230 -9606 10019 SH2B3 - IDDM20|LNK HGNC:29605|MIM:605093|Ensembl:ENSG00000111252|HPRD:05480|Vega:OTTHUMG00000169550 12 12q24 SH2B adaptor protein 3 protein-coding SH2B3 SH2B adaptor protein 3 O SH2B adapter protein 3|lymphocyte-specific adapter protein Lnk|signal transduction protein Lnk 20121230 -9606 10020 GNE - DMRV|GLCNE|IBM2|NM|Uae1 HGNC:23657|MIM:603824|Ensembl:ENSG00000159921|HPRD:04825|Vega:OTTHUMG00000019899 9 9p13.3 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase O N-acylmannosamine kinase|UDP-GlcNAc-2-epimerase/ManAc kinase|UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase|UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase|bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase 20121230 -9606 10021 HCN4 - SSS2 HGNC:16882|MIM:605206|Ensembl:ENSG00000138622|HPRD:09240|Vega:OTTHUMG00000137563 15 15q24.1 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 protein-coding HCN4 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 O hyperpolarization activated cyclic nucleotide-gated cation channel 4|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 20121230 -9606 10022 INSL5 UNQ156/PRO182 PRO182|UNQ156 HGNC:6088|MIM:606413|Ensembl:ENSG00000172410|HPRD:08400|Vega:OTTHUMG00000009164 1 1p31.3 insulin-like 5 protein-coding INSL5 insulin-like 5 O insulin-like peptide 5|insulin-like peptide INSL5 20121230 -9606 10023 FRAT1 RP11-452K12.1 - HGNC:3944|MIM:602503|Ensembl:ENSG00000165879|HPRD:03935|Vega:OTTHUMG00000018848 10 10q24.1 frequently rearranged in advanced T-cell lymphomas protein-coding FRAT1 frequently rearranged in advanced T-cell lymphomas O FRAT-1|frequently rearranged in advanced T-cell lymphomas 1|proto-oncogene FRAT1 20121230 -9606 10024 TROAP - TASTIN HGNC:12327|MIM:603872|Ensembl:ENSG00000135451|HPRD:04849|Vega:OTTHUMG00000169486 12 12q13.12 trophinin associated protein protein-coding TROAP trophinin associated protein O tastin|trophinin assisting protein|trophinin-assisting protein (tastin)|trophinin-associated protein 20121230 -9606 10025 MED16 - DRIP92|THRAP5|TRAP95 HGNC:17556|MIM:604062|Ensembl:ENSG00000175221|HPRD:06816|Vega:OTTHUMG00000181841 19 19p13.3 mediator complex subunit 16 protein-coding MED16 mediator complex subunit 16 O mediator of RNA polymerase II transcription subunit 16|thyroid hormone receptor-associated protein 5|thyroid hormone receptor-associated protein complex 95 kDa component|thyroid hormone receptor-associated protein, 95-kD subunit|vitamin D3 receptor-interacting protein complex 92 kDa component 20121230 -9606 10026 PIGK RP4-564M11.1 GPI8 HGNC:8965|MIM:605087|Ensembl:ENSG00000142892|HPRD:05474|Vega:OTTHUMG00000009686 1 1p31.1 phosphatidylinositol glycan anchor biosynthesis, class K protein-coding PIGK phosphatidylinositol glycan anchor biosynthesis, class K O GPI transamidase subunit|GPI-anchor transamidase|GPI8 homolog|PIG-K|phosphatidylinositol glycan, class K|phosphatidylinositol-glycan biosynthesis class K protein 20121230 -9606 10029 CASKP1 - CASKP HGNC:1498 Y Yq11 calcium/calmodulin-dependent serine protein kinase (MAGUK family) pseudogene 1 pseudo CASKP1 calcium/calmodulin-dependent serine protein kinase (MAGUK family) pseudogene 1 O - 20121230 -9606 10031 SHROOM2P1 - APXLP HGNC:631 Y Yq11.21 shroom family member 2 pseudogene 1 pseudo SHROOM2P1 shroom family member 2 pseudogene 1 O - 20121230 -9606 10033 ARSEP1 - ARSEP HGNC:720 Y Yq11.21 arylsulfatase E pseudogene 1 pseudo ARSEP1 arylsulfatase E pseudogene 1 O - 20121230 -9606 10034 ARSDP1 - ARSDP|ARSDY1 HGNC:718 Y Yq11.21 arylsulfatase D pseudogene 1 pseudo ARSDP1 arylsulfatase D pseudogene 1 O - 20121230 -9606 10036 CHAF1A - CAF-1|CAF1|CAF1B|CAF1P150|P150 HGNC:1910|MIM:601246|Ensembl:ENSG00000167670|HPRD:03148|Vega:OTTHUMG00000181922 19 19p13.3 chromatin assembly factor 1, subunit A (p150) protein-coding CHAF1A chromatin assembly factor 1, subunit A (p150) O CAF-1 subunit A|CAF-I 150 kDa subunit|CAF-I p150|chromatin assembly factor 1 subunit A|chromatin assembly factor I (150 kDa)|chromatin assembly factor I p150 subunit|hp150 20121230 -9606 10038 PARP2 - ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2 HGNC:272|MIM:607725|Ensembl:ENSG00000129484|Vega:OTTHUMG00000166106 14 14q11.2-q12 poly (ADP-ribose) polymerase 2 protein-coding PARP2 poly (ADP-ribose) polymerase 2 O ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 2|ADP-ribosyltransferase diphtheria toxin-like 2|ADPRT-2|NAD(+) ADP-ribosyltransferase 2|hPARP-2|poly (ADP-ribose) polymerase family, member 2|poly (ADP-ribosyl) transferase-like 2|poly [ADP-ribose] polymerase 2|poly(ADP-ribose) synthetase|poly[ADP-ribose] synthase 2|poly[ADP-ribose] synthetase 2 20121230 -9606 10039 PARP3 - ADPRT3|ADPRTL2|ADPRTL3|ARTD3|IRT1|PADPRT-3 HGNC:273|MIM:607726|Ensembl:ENSG00000041880|HPRD:06370|Vega:OTTHUMG00000156931 3 3p21.31-p21.1 poly (ADP-ribose) polymerase family, member 3 protein-coding PARP3 poly (ADP-ribose) polymerase family, member 3 O ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 2|ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3|ADP-ribosyltransferase diphtheria toxin-like 3|ADPRT-3|NAD(+) ADP-ribosyltransferase 3|NAD+ ADP-ribosyltransferase 3|poly [ADP-ribose] polymerase 3|poly(ADP-ribose) synthetase-3|poly[ADP-ribose] synthase 3|poly[ADP-ribose] synthetase 3 20121230 -9606 10040 TOM1L1 - OK/KNS-CL.3|SRCASM HGNC:11983|MIM:604701|Ensembl:ENSG00000141198|HPRD:05266|Vega:OTTHUMG00000177816 17 17q23.2 target of myb1 (chicken)-like 1 protein-coding TOM1L1 target of myb1 (chicken)-like 1 O Src activating and signaling molecule|TOM1-like protein 1|src-activating and signaling molecule protein|target of Myb-like protein 1|target of myb 1-like 1|target of myb1-like 1 20121230 -9606 10042 HMGXB4 RP3-510H16.1 HMG2L1|HMGBCG|THC211630 HGNC:5003|MIM:604702|Ensembl:ENSG00000100281|HPRD:05267|Vega:OTTHUMG00000150439 22 22q13.1 HMG box domain containing 4 protein-coding HMGXB4 HMG box domain containing 4 O HMG box-containing protein 4|HMG domain-containing protein 4|high mobility group protein 2-like 1|high-mobility group protein 2-like 1 20121230 -9606 10043 TOM1 CTA-286B10.4 - HGNC:11982|MIM:604700|Ensembl:ENSG00000100284|HPRD:05265|Vega:OTTHUMG00000150958 22 22q13.1 target of myb1 (chicken) protein-coding TOM1 target of myb1 (chicken) O target of Myb protein 1|target of myb 1 20121230 -9606 10044 SH2D3C RP11-56D16.1 CHAT|NSP3|PRO34088 HGNC:16884|MIM:604722|Ensembl:ENSG00000095370|HPRD:05284|Vega:OTTHUMG00000020717 9 9q34.11 SH2 domain containing 3C protein-coding SH2D3C SH2 domain containing 3C O SH2 domain-containing protein 3C|novel SH2-containing protein 3 20121230 -9606 10045 SH2D3A UNQ175/PRO201 NSP1 HGNC:16885|MIM:604721|Ensembl:ENSG00000125731|HPRD:05283 19 19p13.3 SH2 domain containing 3A protein-coding SH2D3A SH2 domain containing 3A O SH2 domain-containing 3A|SH2 domain-containing protein 3A|novel SH2-containing protein 1 20121230 -9606 10046 MAMLD1 - CG1|CXorf6|F18|HYSP2 HGNC:2568|MIM:300120|Ensembl:ENSG00000013619|HPRD:02126|Vega:OTTHUMG00000024157 X Xq28 mastermind-like domain containing 1 protein-coding MAMLD1 mastermind-like domain containing 1 O mastermind-like domain-containing protein 1 20121230 -9606 10047 CST8 RP3-333B15.3 CRES|CTES5 HGNC:2480|MIM:608683|Ensembl:ENSG00000125815|HPRD:16366|Vega:OTTHUMG00000032071 20 20p11.21 cystatin 8 (cystatin-related epididymal specific) protein-coding CST8 cystatin 8 (cystatin-related epididymal specific) O cystatin-8|cystatin-related epididymal spermatogenic protein|cystatin-related epididymal-specific 20121230 -9606 10048 RANBP9 - BPM-L|BPM90|RANBPM|RanBP7 HGNC:13727|MIM:603854|Ensembl:ENSG00000010017|HPRD:04835|Vega:OTTHUMG00000015642 6 6p23 RAN binding protein 9 protein-coding RANBP9 RAN binding protein 9 O Ran Binding Protein in the Microtubule organizing center|novel centrosomal protein RanBPM|ran binding protein, centrosomal|ran-binding protein 9|ran-binding protein M 20121230 -9606 10049 DNAJB6 tcag7.555 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1E|MRJ|MSJ-1 HGNC:14888|MIM:611332|Ensembl:ENSG00000105993|HPRD:07107|Vega:OTTHUMG00000157242 7 7q36.3 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 O DnaJ-like 2 protein|dnaJ homolog subfamily B member 6|heat shock protein J2 20121230 -9606 10050 SLC17A4 - KAIA2138 HGNC:10932|MIM:604216|Ensembl:ENSG00000146039|HPRD:05022|Vega:OTTHUMG00000014410 6 6p22.2 solute carrier family 17 (sodium phosphate), member 4 protein-coding SLC17A4 solute carrier family 17 (sodium phosphate), member 4 O Na/PO4 cotransporter|putative small intestine sodium-dependent phosphate transport protein|solute carrier family 17 member 4 20121230 -9606 10051 SMC4 - CAP-C|CAPC|SMC-4|SMC4L1|hCAP-C HGNC:14013|MIM:605575|Ensembl:ENSG00000113810|HPRD:09276|Vega:OTTHUMG00000159006 3 3q26.1 structural maintenance of chromosomes 4 protein-coding SMC4 structural maintenance of chromosomes 4 O SMC protein 4|SMC4 structural maintenance of chromosomes 4-like 1|XCAP-C homolog|chromosome-associated polypeptide C|structural maintenance of chromosomes protein 4 20121230 -9606 10052 GJC1 - CX45|GJA7 HGNC:4280|MIM:608655|Ensembl:ENSG00000182963|HPRD:08819|Vega:OTTHUMG00000179861 17 17q21.31 gap junction protein, gamma 1, 45kDa protein-coding GJC1 gap junction protein, gamma 1, 45kDa O connexin 45|connexin-45|gap junction alpha-7 protein|gap junction gamma-1 protein 20121230 -9606 10053 AP1M2 - AP1-mu2|HSMU1B|MU-1B|MU1B|mu2 HGNC:558|MIM:607309|Ensembl:ENSG00000129354|HPRD:06296|Vega:OTTHUMG00000180584 19 19p13.2 adaptor-related protein complex 1, mu 2 subunit protein-coding AP1M2 adaptor-related protein complex 1, mu 2 subunit O AP-1 complex subunit mu-2|AP-mu chain family member mu1B|HA1 47 kDa subunit 2|adaptor protein complex AP-1 mu-2 subunit|adaptor-related protein complex 1 mu-2 subunit|clathrin assembly protein complex 1 medium chain 2|clathrin coat assembly protein AP47 2|clathrin coat associated protein AP47 2|clathrin-associated adaptor medium chain mu2|golgi adaptor AP-1 47 kDa protein|golgi adaptor HA1/AP1 adaptin mu-2 subunit|mu-adaptin 2|mu1B-adaptin 20121230 -9606 10054 UBA2 HRIHFB2115 ARX|SAE2 HGNC:30661|MIM:613295|Ensembl:ENSG00000126261|HPRD:11658|Vega:OTTHUMG00000182090 19 19q12 ubiquitin-like modifier activating enzyme 2 protein-coding UBA2 ubiquitin-like modifier activating enzyme 2 O SUMO-1 activating enzyme subunit 2|SUMO-activating enzyme subunit 2|SUMO1 activating enzyme subunit 2|UBA2, ubiquitin-activating enzyme E1 homolog|anthracycline-associated resistance ARX|ubiquitin-like 1-activating enzyme E1B 20121230 -9606 10055 SAE1 - AOS1|HSPC140|SUA1|UBLE1A HGNC:30660|MIM:613294|Ensembl:ENSG00000142230|HPRD:18010 19 19q13.32 SUMO1 activating enzyme subunit 1 protein-coding SAE1 SUMO1 activating enzyme subunit 1 O SUMO-1 activating enzyme E1 N subunit|SUMO-1 activating enzyme subunit 1|SUMO-activating enzyme subunit 1|activator of SUMO1|sentrin/SUMO-activating protein AOS1|ubiquitin-like 1-activating enzyme E1A|ubiquitin-like protein SUMO-1 activating enzyme 20121230 -9606 10056 FARSB HSPC173 FARSLB|FRSB|PheHB|PheRS HGNC:17800|MIM:609690|Ensembl:ENSG00000116120|HPRD:09947|Vega:OTTHUMG00000133155 2 2q36.1 phenylalanyl-tRNA synthetase, beta subunit protein-coding FARSB phenylalanyl-tRNA synthetase, beta subunit O phenylalanine tRNA ligase 1, beta, cytoplasmic|phenylalanine--tRNA ligase beta chain|phenylalanine--tRNA ligase beta subunit|phenylalanine-tRNA ligase beta chain|phenylalanine-tRNA synthetase-like, beta subunit|phenylalanyl-tRNA synthetase beta chain|phenylalanyl-tRNA synthetase beta-subunit|phenylalanyl-tRNA synthetase-like, beta subunit 20121230 -9606 10057 ABCC5 - ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 HGNC:56|MIM:605251|Ensembl:ENSG00000114770|HPRD:06898|Vega:OTTHUMG00000156871 3 3q27 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 protein-coding ABCC5 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 O ATP-binding cassette sub-family C member 5|canalicular multispecific organic anion transporter C|multi-specific organic anion transporter C|multidrug resistance-associated protein 5 20121230 -9606 10058 ABCB6 - ABC|ABC14|LAN|MCOPCB7|MTABC3|PRP|umat HGNC:47|MIM:605452|Ensembl:ENSG00000115657|HPRD:09261|Vega:OTTHUMG00000133131 2 2q36 ATP-binding cassette, sub-family B (MDR/TAP), member 6 protein-coding ABCB6 ATP-binding cassette, sub-family B (MDR/TAP), member 6 O ATP-binding cassette half-transporter|ATP-binding cassette sub-family B member 6, mitochondrial|P-glycoprotein-related protein|mitochondrial ABC transporter 3|mt-ABC transporter 3|ubiquitously-expressed mammalian ABC half transporter 20121230 -9606 10059 DNM1L - DLP1|DRP1|DVLP|DYMPLE|DYNIV-11|EMPF|HDYNIV|VPS1 HGNC:2973|MIM:603850|Ensembl:ENSG00000087470|HPRD:04833|Vega:OTTHUMG00000169451 12 12p11.21 dynamin 1-like protein-coding DNM1L dynamin 1-like O Dnm1p/Vps1p-like protein|dynamin family member proline-rich carboxyl-terminal domain less|dynamin-1-like protein|dynamin-like protein 4|dynamin-like protein IV|dynamin-related protein 1 20121230 -9606 10060 ABCC9 - ABC37|ATFB12|CANTU|CMD1O|SUR2 HGNC:60|MIM:601439|Ensembl:ENSG00000069431|HPRD:03258|Vega:OTTHUMG00000169094 12 12p12.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 protein-coding ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 O ATP-binding cassette sub-family C member 9|ATP-binding cassette transporter sub-family C member 9|sulfonylurea receptor 2 20121230 -9606 10061 ABCF2 HUSSY-18 ABC28|EST133090|HUSSY18|M-ABC1 HGNC:71|MIM:612510|Ensembl:ENSG00000033050|HPRD:12403|Vega:OTTHUMG00000154570 7 7q36 ATP-binding cassette, sub-family F (GCN20), member 2 protein-coding ABCF2 ATP-binding cassette, sub-family F (GCN20), member 2 O ABC-type transport protein|ATP-binding cassette sub-family F member 2|Iron inhibited ABC transporter 2|iron-inhibited ABC transporter 2 20121230 -9606 10062 NR1H3 - LXR-a|LXRA|RLD-1 HGNC:7966|MIM:602423|Ensembl:ENSG00000025434|HPRD:07211|Vega:OTTHUMG00000150628 11 11p11.2 nuclear receptor subfamily 1, group H, member 3 protein-coding NR1H3 nuclear receptor subfamily 1, group H, member 3 O liver X nuclear receptor alpha variant 1|oxysterols receptor LXR-alpha 20121230 -9606 10063 COX17 - - HGNC:2264|MIM:604813|Ensembl:ENSG00000138495|HPRD:05314|Vega:OTTHUMG00000159433 3 3q13.33 cytochrome c oxidase assembly homolog 17 (yeast) protein-coding COX17 cytochrome c oxidase assembly homolog 17 (yeast) O COX17 cytochrome c oxidase assembly homolog|cytochrome c oxidase copper chaperone|human homolog of yeast mitochondrial copper recruitment 20121230 -9606 10064 VDAC1P2 - VDAC1LP HGNC:12670 X Xp11.2 voltage-dependent anion channel 1 pseudogene 2 pseudo VDAC1P2 voltage-dependent anion channel 1 pseudogene 2 O - 20121230 -9606 10066 SCAMP2 - - HGNC:10564|MIM:606912|Ensembl:ENSG00000140497|HPRD:06073|Vega:OTTHUMG00000142817 15 15q23-q25 secretory carrier membrane protein 2 protein-coding SCAMP2 secretory carrier membrane protein 2 O secretory carrier-associated membrane protein 2 20121230 -9606 10067 SCAMP3 - C1orf3 HGNC:10565|MIM:606913|Ensembl:ENSG00000116521|HPRD:06074|Vega:OTTHUMG00000035874 1 1q21 secretory carrier membrane protein 3 protein-coding SCAMP3 secretory carrier membrane protein 3 O propin 1|secretory carrier-associated membrane protein 3 20121230 -9606 10068 IL18BP - IL18BPa HGNC:5987|MIM:604113|Ensembl:ENSG00000137496|HPRD:04984|Vega:OTTHUMG00000133713 11 11q13 interleukin 18 binding protein protein-coding IL18BP interleukin 18 binding protein O IL-18BP|MC51L-53L-54L homolog gene product|interleukin-18-binding protein|tadekinig-alfa 20121230 -9606 10069 RWDD2B GL011 C21orf6 HGNC:1302|Ensembl:ENSG00000156253|HPRD:10757|Vega:OTTHUMG00000078805 21 21q22.11 RWD domain containing 2B protein-coding RWDD2B RWD domain containing 2B O RWD domain-containing protein 2B 20121230 -9606 10071 MUC12 - MUC-11|MUC-12|MUC11 HGNC:7510|MIM:604609|Ensembl:ENSG00000205277|Vega:OTTHUMG00000157042 7 7q22 mucin 12, cell surface associated protein-coding MUC12 mucin 12, cell surface associated O mucin 11|mucin-11|mucin-12 20121230 -9606 10072 DPP3 hCG_2016942 DPPIII HGNC:3008|MIM:606818|Ensembl:ENSG00000254986|HPRD:06012|Vega:OTTHUMG00000167143 11 11q12-q13.1 dipeptidyl-peptidase 3 protein-coding DPP3 dipeptidyl-peptidase 3 O DPP III|dipeptidyl aminopeptidase III|dipeptidyl arylamidase III|dipeptidyl peptidase 3|dipeptidyl peptidase III 20121230 -9606 10073 SNUPN - KPNBL|RNUT1|Snurportin1 HGNC:14245|MIM:607902|Ensembl:ENSG00000169371|HPRD:07441|Vega:OTTHUMG00000142833 15 15q24.2 snurportin 1 protein-coding SNUPN snurportin 1 O RNA U transporter 1|RNA, U transporter 1|snurportin-1 20121230 -9606 10075 HUWE1 RP3-339A18.4 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HGNC:30892|MIM:300697|Ensembl:ENSG00000086758|HPRD:06608|Vega:OTTHUMG00000021617 X Xp11.22 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase O ARF-binding protein 1|BJ-HCC-24 tumor antigen|E3 ubiquitin-protein ligase HUWE1|HECT domain protein LASU1|Mcl-1 ubiquitin ligase E3|URE-binding protein 1|homologous to E6AP carboxyl terminus homologous protein 9|large structure of UREB1|upstream regulatory element-binding protein 1 20121230 -9606 10076 PTPRU - FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J HGNC:9683|MIM:602454|Ensembl:ENSG00000060656|HPRD:03908|Vega:OTTHUMG00000003699 1 1p35.3 protein tyrosine phosphatase, receptor type, U protein-coding PTPRU protein tyrosine phosphatase, receptor type, U O PTP pi|Receptor protein tyrosine phosphatase hPTP-J|pancreatic carcinoma phosphatase 2|pi R-PTP-Psi|protein tyrosine phosphatase J|protein tyrosine phosphatase receptor omicron|protein-tyrosine phosphatase J|protein-tyrosine phosphatase pi|protein-tyrosine phosphatase receptor omicron|receptor-type protein-tyrosine phosphatase psi|receptor-type tyrosine-protein phosphatase U 20121230 -9606 10077 TSPAN32 - ART1|PHEMX|PHMX|TSSC6 HGNC:13410|MIM:603853|Ensembl:ENSG00000064201|HPRD:04834|Vega:OTTHUMG00000009762 11 11p15.5 tetraspanin 32 protein-coding TSPAN32 tetraspanin 32 O pan-hematopoietic expression protein|protein Phemx|tetraspanin-32|tspan-32|tumor-suppressing STF cDNA 6|tumor-suppressing subchromosomal transferable fragment cDNA 6|tumor-suppressing subtransferable candidate 6 20121230 -9606 10078 TSSC4 - - HGNC:12386|MIM:603852|Ensembl:ENSG00000184281|HPRD:10357|Vega:OTTHUMG00000009895 11 11p15.5 tumor suppressing subtransferable candidate 4 protein-coding TSSC4 tumor suppressing subtransferable candidate 4 O protein TSSC4|tumor-suppressing STF cDNA 4 protein|tumor-suppressing subchromosomal transferable fragment candidate gene 4 protein 20121230 -9606 10079 ATP9A - ATPIIA HGNC:13540|MIM:609126|Ensembl:ENSG00000054793|HPRD:18541|Vega:OTTHUMG00000032751 20 20q13.2 ATPase, class II, type 9A protein-coding ATP9A ATPase, class II, type 9A O ATPase type IV, phospholipid-transporting (P-type),(putative)|phospholipid-transporting ATPase IIA|probable phospholipid-transporting ATPase IIA 20121230 -9606 10081 PDCD7 - ES18|HES18 HGNC:8767|MIM:608138|Ensembl:ENSG00000090470|HPRD:09736|Vega:OTTHUMG00000133117 15 15q22.31 programmed cell death 7 protein-coding PDCD7 programmed cell death 7 O U11/U12 snRNP 59K|apoptosis-related protein ES18|programmed cell death protein 7 20121230 -9606 10082 GPC6 UNQ369/PRO705 OMIMD1 HGNC:4454|MIM:604404|Ensembl:ENSG00000183098|HPRD:05099|Vega:OTTHUMG00000017205 13 13q32 glypican 6 protein-coding GPC6 glypican 6 O glypican proteoglycan 6|glypican-6 20121230 -9606 10083 USH1C - AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|ush1cpst HGNC:12597|MIM:605242|Ensembl:ENSG00000006611|HPRD:09241|Vega:OTTHUMG00000166323 11 11p14.3 Usher syndrome 1C (autosomal recessive, severe) protein-coding USH1C Usher syndrome 1C (autosomal recessive, severe) O antigen NY-CO-38/NY-CO-37|autoimmune enteropathy-related antigen AIE-75|harmonin|renal carcinoma antigen NY-REN-3|usher syndrome type-1C protein 20121230 -9606 10084 PQBP1 JM26 MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS HGNC:9330|MIM:300463|Ensembl:ENSG00000102103|HPRD:02354|Vega:OTTHUMG00000024128 X Xp11.23 polyglutamine binding protein 1 protein-coding PQBP1 polyglutamine binding protein 1 O 38 kDa nuclear protein containing a WW domain|nuclear protein containing WW domain 38 kD|polyglutamine tract-binding protein 1|polyglutamine-binding protein 1 20121230 -9606 10085 EDIL3 - DEL1 HGNC:3173|MIM:606018|Ensembl:ENSG00000164176|HPRD:09350|Vega:OTTHUMG00000119047 5 5q14 EGF-like repeats and discoidin I-like domains 3 protein-coding EDIL3 EGF-like repeats and discoidin I-like domains 3 O EGF-like repeat and discoidin I-like domain-containing protein 3|developmental endothelial locus-1|developmentally-regulated endothelial cell locus 1 protein|integrin-binding protein DEL1 20121230 -9606 10086 HHLA1 - PLA2L HGNC:4904|MIM:604109|Ensembl:ENSG00000132297|HPRD:06823|Vega:OTTHUMG00000140390 8 8q24 HERV-H LTR-associating 1 protein-coding HHLA1 HERV-H LTR-associating 1 O HERV-H LTR-associating protein 1 20121230 -9606 10087 COL4A3BP - CERT|CERTL|GPBP|STARD11 HGNC:2205|MIM:604677|Ensembl:ENSG00000113163|HPRD:05246|Vega:OTTHUMG00000102068 5 5q13.3 collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein-coding COL4A3BP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein O StAR-related lipid transfer (START) domain containing 11|ceramide transfer protein|ceramide transporter|collagen type IV alpha-3-binding protein|hCERT|lipid-transfer protein CERTL 20121230 -9606 10089 KCNK7 - K2p7.1|TWIK3 HGNC:6282|MIM:603940|Ensembl:ENSG00000173338|HPRD:06804|Vega:OTTHUMG00000166528 11 11q13 potassium channel, subfamily K, member 7 protein-coding KCNK7 potassium channel, subfamily K, member 7 O potassium channel subfamily K member 7|two pore domain K+ channel 20121230 -9606 10090 UST - 2OST HGNC:17223|MIM:610752|Ensembl:ENSG00000111962|HPRD:10298|Vega:OTTHUMG00000016135 6 6q25.1 uronyl-2-sulfotransferase protein-coding UST uronyl-2-sulfotransferase O dermatan/chondroitin sulfate 2-sulfotransferase|uronyl 2-sulfotransferase 20121230 -9606 10092 ARPC5 RP1-127C7.3 ARC16|dJ127C7.3|p16-Arc HGNC:708|MIM:604227|Ensembl:ENSG00000162704|HPRD:11969|Vega:OTTHUMG00000035326 1 1q25.3 actin related protein 2/3 complex, subunit 5, 16kDa protein-coding ARPC5 actin related protein 2/3 complex, subunit 5, 16kDa O Arp2/3 protein complex subunit p16|actin-related protein 2/3 complex subunit 5|arp2/3 complex 16 kDa subunit 20121230 -9606 10093 ARPC4 - ARC20|P20-ARC HGNC:707|MIM:604226|Ensembl:ENSG00000241553|HPRD:10368|Vega:OTTHUMG00000133768 3 3p25.3 actin related protein 2/3 complex, subunit 4, 20kDa protein-coding ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa O actin-related protein 2/3 complex subunit 4|arp2/3 complex 20 kDa subunit|arp2/3 protein complex subunit p20 20121230 -9606 10094 ARPC3 - ARC21|p21-Arc HGNC:706|MIM:604225|Ensembl:ENSG00000111229|HPRD:09175|Vega:OTTHUMG00000134333 12 12q24.11 actin related protein 2/3 complex, subunit 3, 21kDa protein-coding ARPC3 actin related protein 2/3 complex, subunit 3, 21kDa O ARP2/3 protein complex subunit p21|actin-related protein 2/3 complex subunit 3|arp2/3 complex 21 kDa subunit 20121230 -9606 10095 ARPC1B - ARC41|p40-ARC|p41-ARC HGNC:704|MIM:604223|Ensembl:ENSG00000130429|HPRD:10366|Vega:OTTHUMG00000154552 7 7q22.1 actin related protein 2/3 complex, subunit 1B, 41kDa protein-coding ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa O ARP2/3 protein complex subunit p41|actin-related protein 2/3 complex subunit 1B|arp2/3 complex 41 kDa subunit 20121230 -9606 10096 ACTR3 - ARP3 HGNC:170|MIM:604222|Ensembl:ENSG00000115091|HPRD:05024|Vega:OTTHUMG00000153497 2 2q14.1 ARP3 actin-related protein 3 homolog (yeast) protein-coding ACTR3 ARP3 actin-related protein 3 homolog (yeast) O actin-like protein 3|actin-related protein 3 20121230 -9606 10097 ACTR2 - ARP2 HGNC:169|MIM:604221|Ensembl:ENSG00000138071|HPRD:05023|Vega:OTTHUMG00000129540 2 2p14 ARP2 actin-related protein 2 homolog (yeast) protein-coding ACTR2 ARP2 actin-related protein 2 homolog (yeast) O actin-like protein 2|actin-related protein 2 20121230 -9606 10098 TSPAN5 - NET-4|NET4|TM4SF9|TSPAN-5 HGNC:17753|MIM:613136|Ensembl:ENSG00000168785|HPRD:15513|Vega:OTTHUMG00000131008 4 4q23 tetraspanin 5 protein-coding TSPAN5 tetraspanin 5 O tetraspan 5|tetraspan NET-4|tetraspan TM4SF|tetraspanin-5|transmembrane 4 superfamily member 9|transmembrane 4 superfamily, member 8 20121230 -9606 10099 TSPAN3 - TM4-A|TM4SF8|TSPAN-3 HGNC:17752|MIM:613134|Ensembl:ENSG00000140391|HPRD:15512|Vega:OTTHUMG00000143728 15 15q24.3 tetraspanin 3 protein-coding TSPAN3 tetraspanin 3 O tetraspan 3|tetraspan TM4SF|tetraspanin TM4-A|tetraspanin-3|transmembrane 4 superfamily member 8 20121230 -9606 10100 TSPAN2 RP4-666F24.2 NET3|TSN2|TSPAN-2 HGNC:20659|MIM:613133|Ensembl:ENSG00000134198|HPRD:18233|Vega:OTTHUMG00000011878 1 1p13.2 tetraspanin 2 protein-coding TSPAN2 tetraspanin 2 O new EST tetraspan 3|tetraspan 2|tetraspan NET-3|tetraspan TM4SF|tetraspanin 2 isoform|tetraspanin-2 20121230 -9606 10101 NUBP2 - CFD1|NUBP1 HGNC:8042|MIM:610779|Ensembl:ENSG00000095906|HPRD:14846|Vega:OTTHUMG00000128639 16 16p13.3 nucleotide binding protein 2 protein-coding NUBP2 nucleotide binding protein 2 O C447E6.1 (nucleotide binding protein 1 (E.coli MinD like) )|NBP 2|cytosolic Fe-S cluster assembly factor NUBP2|homolog of yeast cytosolic Fe-S cluster deficient 1|nucleotide binding protein 2 (E.coli MinD like)|nucleotide binding protein 2 (MinD homolog, E. coli)|nucleotide-binding protein 2 20121230 -9606 10102 TSFM - EFTS|EFTSMT HGNC:12367|MIM:604723|Ensembl:ENSG00000123297|HPRD:05285|Vega:OTTHUMG00000153042 12 12q14.1 Ts translation elongation factor, mitochondrial protein-coding TSFM Ts translation elongation factor, mitochondrial O elongation factor Ts, mitochondrial|mitochondrial elongation factor Ts 20121230 -9606 10103 TSPAN1 - NET1|TM4C|TM4SF HGNC:20657|MIM:613170|Ensembl:ENSG00000117472|HPRD:18232|Vega:OTTHUMG00000007602 1 1p34.1 tetraspanin 1 protein-coding TSPAN1 tetraspanin 1 O tetraspan 1|tetraspanin-1 20121230 -9606 10105 PPIF RP11-342M3.4 CYP3|Cyp-D HGNC:9259|MIM:604486|Ensembl:ENSG00000108179|HPRD:06839|Vega:OTTHUMG00000018562 10 10q22-q23 peptidylprolyl isomerase F protein-coding PPIF peptidylprolyl isomerase F O PPIase F|cyclophilin 3|cyclophilin D|cyclophilin F|peptidyl-prolyl cis-trans isomerase F, mitochondrial|peptidyl-prolyl cis-trans isomerase, mitochondrial|rotamase F 20121230 -9606 10106 CTDSP2 - OS4|PSR2|SCP2 HGNC:17077|MIM:608711|Ensembl:ENSG00000175215|HPRD:12281|Vega:OTTHUMG00000170483 12 12q14.1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 protein-coding CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 O NLI-interacting factor 2|carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2|conserved gene amplified in osteosarcoma|nuclear LIM interactor-interacting factor 2|protein OS-4|small C-terminal domain phosphatase 2|small CTD phosphatase 2 20121230 -9606 10107 TRIM10 DAAP-200B17.4 HERF1|RFB30|RNF9 HGNC:10072|MIM:605701|Ensembl:ENSG00000204613|HPRD:05752|Vega:OTTHUMG00000031295 6 6p21.3 tripartite motif containing 10 protein-coding TRIM10 tripartite motif containing 10 O B30-RING finger protein|Zn-finger protein|hematopoietic RING finger 1|ring finger protein 9|tripartite motif protein 10|tripartite motif-containing 10|tripartite motif-containing protein 10 20121230 -9606 10108 MKRN3-AS1 - FNZ127|MKRN3-AS|MKRN3AS|NCRNA00009|ZNF127AS HGNC:12910|MIM:603857 15 15q11-q13 MKRN3 antisense RNA 1 miscRNA MKRN3-AS1 MKRN3 antisense RNA 1 O - 20121220 -9606 10109 ARPC2 PRO2446 ARC34|PNAS-139|p34-Arc HGNC:705|MIM:604224|Ensembl:ENSG00000163466|HPRD:10367|Vega:OTTHUMG00000133618 2 2q36.1 actin related protein 2/3 complex, subunit 2, 34kDa protein-coding ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa O ARP2/3 protein complex subunit 34|actin-related protein 2/3 complex subunit 2|arp2/3 complex 34 kDa subunit 20121230 -9606 10110 SGK2 RP1-138B7.2 H-SGK2|dJ138B7.2 HGNC:13900|MIM:607589|Ensembl:ENSG00000101049|HPRD:06348|Vega:OTTHUMG00000033054 20 20q13.2 serum/glucocorticoid regulated kinase 2 protein-coding SGK2 serum/glucocorticoid regulated kinase 2 O serine/threonine-protein kinase Sgk2 20121230 -9606 10111 RAD50 - NBSLD|RAD502|hRad50 HGNC:9816|MIM:604040|Ensembl:ENSG00000113522|HPRD:04950|Vega:OTTHUMG00000059613 5 5q31 RAD50 homolog (S. cerevisiae) protein-coding RAD50 RAD50 homolog (S. cerevisiae) O DNA repair protein RAD50 20121230 -9606 10112 KIF20A - MKLP2|RAB6KIFL HGNC:9787|MIM:605664|Ensembl:ENSG00000112984|HPRD:09292|Vega:OTTHUMG00000129195 5 5q31 kinesin family member 20A protein-coding KIF20A kinesin family member 20A O GG10_2|RAB6 interacting, kinesin-like (rabkinesin6)|kinesin-like protein KIF20A|mitotic kinesin-like protein 2|rab6-interacting kinesin-like protein|rabkinesin-6 20121230 -9606 10113 PREB - SEC12 HGNC:9356|MIM:606395|Ensembl:ENSG00000138073|HPRD:16216|Vega:OTTHUMG00000097076 2 2p23.3 prolactin regulatory element binding protein-coding PREB prolactin regulatory element binding O mammalian guanine nucleotide exchange factor mSec12|prolactin regulatory binding-element protein|prolactin regulatory element-binding protein 20121230 -9606 10114 HIPK3 RP1-8L15.1 DYRK6|FIST3|PKY|YAK1 HGNC:4915|MIM:604424|Ensembl:ENSG00000110422|HPRD:05111|Vega:OTTHUMG00000132269 11 11p13 homeodomain interacting protein kinase 3 protein-coding HIPK3 homeodomain interacting protein kinase 3 O ANPK|FIST|androgen receptor-interacting nuclear protein kinase|fas-interacting serine/threonine-protein kinase|homeodomain-interacting protein kinase 3|homolog of protein kinase YAK1 20121230 -9606 10116 FEM1B - F1A-ALPHA|FIAA HGNC:3649|MIM:613539|Ensembl:ENSG00000169018|HPRD:16889|Vega:OTTHUMG00000133285 15 15q22 fem-1 homolog b (C. elegans) protein-coding FEM1B fem-1 homolog b (C. elegans) O FEM-1-like death receptor binding protein|FEM1-beta|fem-1-like death receptor-binding protein alpha|fem-1-like in apoptotic pathway protein alpha|protein fem-1 homolog B 20121230 -9606 10117 ENAM - ADAI|AI1C|AIH2 HGNC:3344|MIM:606585|Ensembl:ENSG00000132464|HPRD:05960|Vega:OTTHUMG00000129914 4 4q13.3 enamelin protein-coding ENAM enamelin O amelogenesis imperfecta 2, hypocalcification (autosomal dominant) 20121230 -9606 10118 EMWX - - HGNC:3339|MIM:300211 X Xp22.3 episodic muscle weakness, X-linked unknown EMWX episodic muscle weakness, X-linked O - 20120622 -9606 10120 ACTR1B - ARP1B|CTRN2|PC3 HGNC:168|MIM:605144|Ensembl:ENSG00000115073|HPRD:05508|Vega:OTTHUMG00000130549 2 2q11.1-q11.2 ARP1 actin-related protein 1 homolog B, centractin beta (yeast) protein-coding ACTR1B ARP1 actin-related protein 1 homolog B, centractin beta (yeast) O actin-related protein 1B|beta-centractin|centractin beta 20121230 -9606 10121 ACTR1A - ARP1|CTRN1 HGNC:167|MIM:605143|Ensembl:ENSG00000138107|HPRD:05507|Vega:OTTHUMG00000018956 10 10q24.32 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) protein-coding ACTR1A ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) O actin-RPV|alpha-centractin|centractin|centrosome-associated actin homolog 20121230 -9606 10123 ARL4C - ARL7|LAK HGNC:698|MIM:604787|Ensembl:ENSG00000188042|HPRD:11988|Vega:OTTHUMG00000133291 2 2q37.1 ADP-ribosylation factor-like 4C protein-coding ARL4C ADP-ribosylation factor-like 4C O ADP ribosylation factor-like protein 7|ADP-ribosylation factor-like 7|ADP-ribosylation factor-like protein 4C|ADP-ribosylation factor-like protein 7|ADP-ribosylation factor-like protein LAK 20121230 -9606 10124 ARL4A - ARL4 HGNC:695|MIM:604786|Ensembl:ENSG00000122644|HPRD:11987|Vega:OTTHUMG00000023374 7 7p21.3 ADP-ribosylation factor-like 4A protein-coding ARL4A ADP-ribosylation factor-like 4A O ADP-ribosylation factor-like 4|ADP-ribosylation factor-like protein 4A 20121230 -9606 10125 RASGRP1 - CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1 HGNC:9878|MIM:603962|Ensembl:ENSG00000172575|HPRD:04909|Vega:OTTHUMG00000172379 15 15q14 RAS guanyl releasing protein 1 (calcium and DAG-regulated) protein-coding RASGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) O RAS guanyl nucleotide-releasing protein 1|RAS guanyl-releasing protein 1|calcium and DAG-regulated guanine nucleotide exchange factor II|guanine nucleotide exchange factor, calcium- and DAG-regulated, Rap1A|ras activator RasGRP 20121230 -9606 10126 DNAL4 RP3-327J16.7 PIG27 HGNC:2955|MIM:610565|Ensembl:ENSG00000100246|HPRD:13239|Vega:OTTHUMG00000151025 22 22q13.1 dynein, axonemal, light chain 4 protein-coding DNAL4 dynein, axonemal, light chain 4 O dynein light chain 4, axonemal|dynein light chain, outer arm 4|dynein, axonemal, light 4|dynein, axonemal, light polypeptide 4|proliferation-inducing gene 27|proliferation-inducing protein 27 20121230 -9606 10127 ZNF263 - FPM315|ZKSCAN12 HGNC:13056|MIM:604191|Ensembl:ENSG00000006194|HPRD:05008|Vega:OTTHUMG00000129323 16 16p13.3 zinc finger protein 263 protein-coding ZNF263 zinc finger protein 263 O zinc finger protein FPM315|zinc finger protein with KRAB and SCAN domains 12 20121230 -9606 10128 LRPPRC - CLONE-23970|GP130|LRP130|LSFC HGNC:15714|MIM:607544|Ensembl:ENSG00000138095|HPRD:06343|Vega:OTTHUMG00000152782 2 2p21 leucine-rich pentatricopeptide repeat containing protein-coding LRPPRC leucine-rich pentatricopeptide repeat containing O 130 kDa leucine-rich protein|LRP 130|leucine-rich PPR motif-containing protein, mitochondrial|leucine-rich PPR-motif containing|mitochondrial leucine-rich PPR motif-containing protein 20121230 -9606 10129 FRY RP11-37E23.6 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 HGNC:20367|MIM:614818|Ensembl:ENSG00000073910|HPRD:10821|Vega:OTTHUMG00000016696 13 13q13.1 furry homolog (Drosophila) protein-coding FRY furry homolog (Drosophila) O WUGSC:H_2G3A.1|protein furry homolog 20121230 -9606 10130 PDIA6 - ERP5|P5|TXNDC7 HGNC:30168|MIM:611099|Ensembl:ENSG00000143870|HPRD:07504|Vega:OTTHUMG00000090479 2 2p25.1 protein disulfide isomerase family A, member 6 protein-coding PDIA6 protein disulfide isomerase family A, member 6 O ER protein 5|endoplasmic reticulum protein 5|protein disulfide isomerase P5|protein disulfide isomerase-associated 6|protein disulfide isomerase-related protein|protein disulfide-isomerase A6|thioredoxin domain containing 7 (protein disulfide isomerase)|thioredoxin domain-containing protein 7 20121230 -9606 10131 TRAP1 - HSP75|HSP90L HGNC:16264|MIM:606219|Ensembl:ENSG00000126602|HPRD:05868|Vega:OTTHUMG00000129427 16 16p13.3 TNF receptor-associated protein 1 protein-coding TRAP1 TNF receptor-associated protein 1 O HSP 75|TNFR-associated protein 1|TRAP-1|heat shock protein 75 kDa, mitochondrial|tumor necrosis factor type 1 receptor associated protein|tumor necrosis factor type 1 receptor-associated protein 20121230 -9606 10133 OPTN RP11-730A19.1 ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP HGNC:17142|MIM:602432|Ensembl:ENSG00000123240|HPRD:03891|Vega:OTTHUMG00000017690 10 10p13 optineurin protein-coding OPTN optineurin O E3-14.7K-interacting protein|FIP-2|HIP-7|Huntingtin interacting protein L|huntingtin yeast partner L|huntingtin-interacting protein 7|huntingtin-interacting protein L|nemo-related protein|optic neuropathy-inducing protein|transcription factor IIIA-interacting protein|transcrption factor IIIA-interacting protein|tumor necrosis factor alpha-inducible cellular protein containing leucine zipper domains 20121230 -9606 10134 BCAP31 - 6C6-AG|BAP31|CDM|DXS1357E HGNC:16695|MIM:300398|Ensembl:ENSG00000185825|HPRD:02319|Vega:OTTHUMG00000024218 X Xq28 B-cell receptor-associated protein 31 protein-coding BCAP31 B-cell receptor-associated protein 31 O 6C6-AG tumor-associated antigen|BCR-associated protein Bap31|p28 Bap31 20121230 -9606 10135 NAMPT - 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN HGNC:30092|MIM:608764|Ensembl:ENSG00000105835|HPRD:09938|Vega:OTTHUMG00000140388 7 7q22.3 nicotinamide phosphoribosyltransferase protein-coding NAMPT nicotinamide phosphoribosyltransferase O NAmPRTase|pre-B cell-enhancing factor|pre-B-cell colony enhancing factor 1|pre-B-cell colony-enhancing factor 1 20121230 -9606 10136 CELA3A RP11-26H16.2 ELA3|ELA3A HGNC:15944|Ensembl:ENSG00000142789|HPRD:06497|Vega:OTTHUMG00000002755 1 1p36.12 chymotrypsin-like elastase family, member 3A protein-coding CELA3A chymotrypsin-like elastase family, member 3A O chymotrypsin-like elastase family member 3A|elastase 1|elastase 3A, pancreatic|elastase IIIA|elastase-3A|protease E 20121230 -9606 10137 RBM12 RP1-309K20.5 HRIHFB2091|SWAN HGNC:9898|MIM:607179|Ensembl:ENSG00000244462|HPRD:06212|Vega:OTTHUMG00000032350 20 20q11.21 RNA binding motif protein 12 protein-coding RBM12 RNA binding motif protein 12 O RNA-binding motif protein 12|RNA-binding protein 12|SH3/WW domain anchor protein in the nucleus 20121230 -9606 10138 YAF2 - - HGNC:17363|MIM:607534|Ensembl:ENSG00000015153|HPRD:09606|Vega:OTTHUMG00000169380 12 12q12 YY1 associated factor 2 protein-coding YAF2 YY1 associated factor 2 O YY1-associated factor 2 20121230 -9606 10139 ARFRP1 RP4-583P15.1 ARL18|ARP|Arp1 HGNC:662|MIM:604699|Ensembl:ENSG00000101246|HPRD:05264|Vega:OTTHUMG00000032993 20 20q13.3 ADP-ribosylation factor related protein 1 protein-coding ARFRP1 ADP-ribosylation factor related protein 1 O ADP-ribosylation factor-related protein 1|ARF-related protein 1|SCG10 like-protein|helicase-like protein NHL 20121230 -9606 10140 TOB1 - APRO6|PIG49|TOB|TROB|TROB1 HGNC:11979|MIM:605523|Ensembl:ENSG00000141232|HPRD:09273|Vega:OTTHUMG00000162277 17 17q21 transducer of ERBB2, 1 protein-coding TOB1 transducer of ERBB2, 1 O proliferation-inducing gene 49|protein Tob1|transducer of erbB-2 1 20121230 -9606 10141 C4orf6 - aC1 HGNC:13716|Ensembl:ENSG00000082929|HPRD:12826|Vega:OTTHUMG00000125492 4 4p16.2 chromosome 4 open reading frame 6 protein-coding C4orf6 chromosome 4 open reading frame 6 O expressed in neuroblastoma|uncharacterized protein C4orf6 20121230 -9606 10142 AKAP9 - AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO HGNC:379|MIM:604001|Ensembl:ENSG00000127914|HPRD:04921|Vega:OTTHUMG00000131127 7 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 protein-coding AKAP9 A kinase (PRKA) anchor protein (yotiao) 9 O A-kinase anchor protein 350 kDa|A-kinase anchor protein 450 kDa|A-kinase anchor protein 9|AKAP 120-like protein|AKAP9-BRAF fusion protein|centrosome- and Golgi-localized PKN-associated protein|kinase N-associated protein|protein hyperion|protein kinase A anchoring protein 9|protein phosphatase 1, regulatory subunit 45|protein yotiao 20121230 -9606 10143 CLEC3A UNQ700/PRO1345 CLECSF1 HGNC:2052|MIM:613588|Ensembl:ENSG00000166509|HPRD:13072|Vega:OTTHUMG00000137620 16 16q23 C-type lectin domain family 3, member A protein-coding CLEC3A C-type lectin domain family 3, member A O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 1 (cartilage-derived)|C-type lectin domain family 3 member A 20121230 -9606 10144 FAM13A - ARHGAP48|FAM13A1 HGNC:19367|MIM:613299|Ensembl:ENSG00000138640|HPRD:10944|Vega:OTTHUMG00000161006 4 4q22.1 family with sequence similarity 13, member A protein-coding FAM13A family with sequence similarity 13, member A O FAM13A1_v2 protein|family with sequence similarity 13, member A1|protein FAM13A 20121230 -9606 10146 G3BP1 - G3BP|HDH-VIII HGNC:30292|MIM:608431|Ensembl:ENSG00000145907|HPRD:06569|Vega:OTTHUMG00000130123 5 5q33.1 GTPase activating protein (SH3 domain) binding protein 1 protein-coding G3BP1 GTPase activating protein (SH3 domain) binding protein 1 O ATP-dependent DNA helicase VIII|G3BP-1|GAP SH3 domain-binding protein 1|GAP binding protein|Ras-GTPase-activating protein SH3-domain-binding protein|RasGAP-associated endoribonuclease G3BP|ras GTPase-activating protein-binding protein 1 20121230 -9606 10147 SUGP2 - SFRS14 HGNC:18641|MIM:607993|Ensembl:ENSG00000064607|HPRD:10469 19 19p12 SURP and G patch domain containing 2 protein-coding SUGP2 SURP and G patch domain containing 2 O SURP and G-patch domain-containing protein 2|arginine/serine-rich 14 splicing factor|arginine/serine-rich-splicing factor 14|putative splicing factor, arginine/serine-rich 14|splicing factor, arginine/serine-rich 14 20121230 -9606 10148 EBI3 - IL-27B|IL27B HGNC:3129|MIM:605816|Ensembl:ENSG00000105246|HPRD:12051 19 19p13.3 Epstein-Barr virus induced 3 protein-coding EBI3 Epstein-Barr virus induced 3 O EBV-induced gene 3 protein|Epstein-Barr virus induced gene 3|IL-27 subunit beta|IL27 subunit|IL35 subunit|cytokine receptor|epstein-Barr virus-induced gene 3 protein|interleukin-27 subunit beta 20121230 -9606 10149 GPR64 CTD-2245E12.1 EDDM6|HE6|TM7LN2 HGNC:4516|MIM:300572|Ensembl:ENSG00000173698|HPRD:04040|Vega:OTTHUMG00000021223 X Xp22.13 G protein-coupled receptor 64 protein-coding GPR64 G protein-coupled receptor 64 O G protein-coupled receptor, epididymis-specific (seven transmembrane family)|G-protein coupled receptor 64|epididymal protein 6|human epididymis-specific protein 6 20121230 -9606 10150 MBNL2 RP11-128N14.1 MBLL|MBLL39|PRO2032 HGNC:16746|MIM:607327|Ensembl:ENSG00000139793|HPRD:09543|Vega:OTTHUMG00000017239 13 13q32.1 muscleblind-like splicing regulator 2 protein-coding MBNL2 muscleblind-like splicing regulator 2 O muscleblind-like 2|muscleblind-like protein 1|muscleblind-like protein 2|muscleblind-like protein-like 39 20121230 -9606 10151 HNRNPA3P1 - D10S102|FBRNP|HNRPA3|HNRPA3P1 HGNC:13729|HPRD:05644 10 10q11.21 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo HNRNPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 O - 20121230 -9606 10152 ABI2 - ABI-2|ABI2B|AIP-1|AblBP3|SSH3BP2|argBPIA|argBPIB HGNC:24011|MIM:606442|Ensembl:ENSG00000138443|Vega:OTTHUMG00000132879 2 2q33 abl-interactor 2 protein-coding ABI2 abl-interactor 2 O abelson interactor 2|abl binding protein 3|abl interactor 2|abl-binding protein 3|abl-interacting protein 1 (SH3-containing protein)|abl-interactor protein 2b|arg protein tyrosine kinase-binding protein|arg-binding protein 1|argBP1 20121230 -9606 10153 CEBPZ - CBF|CBF2|HSP-CBF|NOC1 HGNC:24218|MIM:612828|Ensembl:ENSG00000115816|HPRD:09875|Vega:OTTHUMG00000100960 2 2p22.2 CCAAT/enhancer binding protein (C/EBP), zeta protein-coding CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta O CCAAT-binding factor|CCAAT-box-binding transcription factor|CCAAT/enhancer binding protein zeta|CCAAT/enhancer-binding protein zeta 20121230 -9606 10154 PLXNC1 - CD232|PLXN-C1|VESPR HGNC:9106|MIM:604259|Ensembl:ENSG00000136040|HPRD:05036|Vega:OTTHUMG00000170235 12 12q23.3 plexin C1 protein-coding PLXNC1 plexin C1 O plexin (semaphorin receptor)|plexin-C1|receptor for viral semaphorin protein|receptor for virally-encoded semaphorin|virus-encoded semaphorin protein receptor 20121230 -9606 10155 TRIM28 - KAP1|RNF96|TF1B|TIF1B HGNC:16384|MIM:601742|Ensembl:ENSG00000130726|HPRD:03445 19 19q13.4 tripartite motif containing 28 protein-coding TRIM28 tripartite motif containing 28 O E3 SUMO-protein ligase TRIM28|KAP-1|KRAB-associated protein 1|KRAB-interacting protein 1|KRIP-1|RING finger protein 96|TIF1-beta|nuclear corepressor KAP-1|transcription intermediary factor 1-beta|transcriptional intermediary factor 1-beta|tripartite motif-containing 28|tripartite motif-containing protein 28 20121230 -9606 10156 RASA4 - CAPRI|GAPL HGNC:23181|MIM:607943|Ensembl:ENSG00000105808|HPRD:12135|Vega:OTTHUMG00000150383 7 7q22 RAS p21 protein activator 4 protein-coding RASA4 RAS p21 protein activator 4 O Ca2+-promoted Ras inactivator|calcium-promoted Ras inactivator|ras GTPase-activating protein 4|rasGAP-activating-like protein 2 20121230 -9606 10157 AASS - LKR/SDH|LKRSDH|LORSDH HGNC:17366|MIM:605113|Ensembl:ENSG00000008311|HPRD:05489|Vega:OTTHUMG00000157058 7 7q31.3 aminoadipate-semialdehyde synthase protein-coding AASS aminoadipate-semialdehyde synthase O alpha-aminoadipate semialdehyde synthase|alpha-aminoadipic semialdehyde synthase, mitochondrial|aminoadipic semialdehyde synthase|lysine-2-oxoglutarate reductase|lysine-ketoglutarate reductase /saccharopine dehydrogenase 20121230 -9606 10158 PDZK1IP1 - DD96|MAP17|RP1-18D14.5|SPAP HGNC:16887|MIM:607178|Ensembl:ENSG00000162366|HPRD:06211|Vega:OTTHUMG00000007852 1 1p33 PDZK1 interacting protein 1 protein-coding PDZK1IP1 PDZK1 interacting protein 1 O 17 kDa membrane-associated protein|PDZK1-interacting protein 1|epithelial protein up-regulated in carcinoma, membrane associated protein 17|membrane-associated protein 17 20121230 -9606 10159 ATP6AP2 HT028 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|M8-9|MRXE|MSTP009|XMRE HGNC:18305|MIM:300556|Ensembl:ENSG00000182220|HPRD:06454|Vega:OTTHUMG00000024103 X Xp11.4 ATPase, H+ transporting, lysosomal accessory protein 2 protein-coding ATP6AP2 ATPase, H+ transporting, lysosomal accessory protein 2 O ATPase H(+)-transporting lysosomal-interacting protein 2|ATPase, H+ transporting, lysosomal (vacuolar proton pump) membrane sector associated protein M8-9|ATPase, H+ transporting, lysosomal interacting protein 2|ER-localized type I transmembrane adaptor|N14F|V-ATPase M8.9 subunit|embryonic liver differentiation factor 10|renin receptor|renin/prorenin receptor|vacuolar ATP synthase membrane sector-associated protein M8-9|vacuolar proton ATP synthase membrane sector associated protein M8-9 20121230 -9606 10160 FARP1 RP11-111L24.1 CDEP|PLEKHC2|PPP1R75 HGNC:3591|MIM:602654|Ensembl:ENSG00000152767|Vega:OTTHUMG00000017248 13 13q32.2 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) protein-coding FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) O FERM, RhoGEF and pleckstrin domain-containing protein 1|PH domain-containing family C member 2|chondrocyte-derived ezrin-like protein|pleckstrin homology domain-containing family C member 2|protein phosphatase 1, regulatory subunit 75 20121230 -9606 10161 LPAR6 - ARWH1|LAH3|P2RY5|P2Y5 HGNC:15520|MIM:609239|Ensembl:ENSG00000139679|HPRD:16465|Vega:OTTHUMG00000016895 13 13q14 lysophosphatidic acid receptor 6 protein-coding LPAR6 lysophosphatidic acid receptor 6 O G-protein coupled purinergic receptor P2Y5|LPA receptor 6|LPA-6|P2Y purinoceptor 5|RB intron encoded G-protein coupled receptor|oleoyl-L-alpha-lysophosphatidic acid receptor|purinergic receptor 5|purinergic receptor P2Y G protein-coupled protein 5|purinergic receptor P2Y, G-protein coupled, 5 20121230 -9606 10162 LPCAT3 - C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy HGNC:30244|MIM:611950|Ensembl:ENSG00000111684|HPRD:12816|Vega:OTTHUMG00000168970 12 12p13 lysophosphatidylcholine acyltransferase 3 protein-coding LPCAT3 lysophosphatidylcholine acyltransferase 3 O 1-acylglycerophosphocholine O-acyltransferase|1-acylglycerophosphoserine O-acyltransferase|O-acyltransferase (membrane bound) domain containing 5|O-acyltransferase domain-containing protein 5|lyso-PC acyltransferase 3|lyso-PS acyltransferase|lysophosphatidylserine acyltransferase|lysophospholipid acyltransferase 5|membrane bound O-acyltransferase domain containing 5|membrane-bound O-acyltransferase domain-containing protein 5|putative protein similar to nessy 20121230 -9606 10163 WASF2 - IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 HGNC:12733|MIM:605875|Ensembl:ENSG00000158195|HPRD:05796|Vega:OTTHUMG00000003393 1 1p36.11 WAS protein family, member 2 protein-coding WASF2 WAS protein family, member 2 O WASP family Verprolin-homologous protein 2|WASP family protein member 2|WASP family protein member 4|protein WAVE-2|putative Wiskott-Aldrich syndrome protein family member 4|suppressor of cyclic-AMP receptor (WASP-family)|verprolin homology domain-containing protein 2|wiskott-Aldrich syndrome protein family member 2 20121230 -9606 10164 CHST4 - GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST HGNC:1972|Ensembl:ENSG00000140835|HPRD:07477|Vega:OTTHUMG00000137592 16 16q22.2 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 protein-coding CHST4 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 O GST-3|HEC-GlcNAc6ST|L-selectin ligand sulfotransferase|N-acetylglucosamine 6-O-sulfotransferase 2|carbohydrate sulfotransferase 4|galactose/N-acetylglucosamine/N-acetylgalactosamine 6-O-sulfotransferase 3|galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 3|glcNAc6ST-2|gn6st-2|high endothelial cells N-acetylglucosamine 6-O-sulfotransferase 20121230 -9606 10165 SLC25A13 - ARALAR2|CITRIN|CTLN2 HGNC:10983|MIM:603859|Ensembl:ENSG00000004864|HPRD:04837|Vega:OTTHUMG00000023074 7 7q21.3 solute carrier family 25 (aspartate/glutamate carrier), member 13 protein-coding SLC25A13 solute carrier family 25 (aspartate/glutamate carrier), member 13 O calcium-binding mitochondrial carrier protein Aralar2|mitochondrial aspartate glutamate carrier 2|solute carrier family 25, member 13 (citrin) 20121230 -9606 10166 SLC25A15 RP11-346L13.4 D13S327|HHH|ORC1|ORNT1 HGNC:10985|MIM:603861|Ensembl:ENSG00000102743|HPRD:04838|Vega:OTTHUMG00000016776 13 13q14 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 protein-coding SLC25A15 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 O mitochondrial ornithine transporter 1|ornithine transporter 1|solute carrier family 25 member 15 20121230 -9606 10167 CFM1 - - HGNC:1881|MIM:603855 19 19q13.2-q13.4 cystic fibrosis modifier 1 protein-coding CFM1 cystic fibrosis modifier 1 O - 20120622 -9606 10168 ZNF197 - D3S1363E|P18|VHLaK|ZKSCAN9|ZNF166|ZNF20 HGNC:12988|Ensembl:ENSG00000186448|HPRD:10322|Vega:OTTHUMG00000133089 3 3p21 zinc finger protein 197 protein-coding ZNF197 zinc finger protein 197 O VHL-associated KRAB-A domain-containing protein|pVHL-associated KRAB domain-containing protein|zinc finger protein 166|zinc finger protein 20|zinc finger protein with KRAB and SCAN domains 9 20121230 -9606 10169 SERF2 - 4F5REL|FAM2C|H4F5REL|HsT17089 HGNC:10757|MIM:605054|Ensembl:ENSG00000140264|HPRD:05447|Vega:OTTHUMG00000059935 15 15q15.3 small EDRK-rich factor 2 protein-coding SERF2 small EDRK-rich factor 2 O gastric cancer-related protein VRG107|protein 4F5-related 20121230 -9606 10170 DHRS9 UNQ835/PRO1773 3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 HGNC:16888|MIM:612131|Ensembl:ENSG00000073737|HPRD:09916|Vega:OTTHUMG00000132180 2 2q31.1 dehydrogenase/reductase (SDR family) member 9 protein-coding DHRS9 dehydrogenase/reductase (SDR family) member 9 O 3-alpha hydroxysteroid dehydrogenase|3-alpha-HSD|NADP-dependent retinol dehydrogenase/reductase|RDH-E2|dehydrogenase/reductase SDR family member 9|retinol dehydrogenase homolog|short chain dehydrogenase/reductase family 9C, member 4|short-chain dehydrogenase/reductase retSDR8|tracheobronchial epithelial cell-specific retinol dehydrogenase 20121230 -9606 10171 RCL1 RP11-125K10.1 RNAC|RPCL1 HGNC:17687|MIM:611405|Ensembl:ENSG00000120158|HPRD:10189|Vega:OTTHUMG00000019474 9 9p24.1-p23 RNA terminal phosphate cyclase-like 1 protein-coding RCL1 RNA terminal phosphate cyclase-like 1 O 2310040A02Rik|RNA 3'-terminal phosphate cyclase-like protein|RNA cyclase homolog 20121230 -9606 10172 ZNF256 - BMZF-3|BMZF3 HGNC:13049|MIM:606956|Ensembl:ENSG00000152454|HPRD:06095 19 19q13.43 zinc finger protein 256 protein-coding ZNF256 zinc finger protein 256 O bone marrow zinc finger 3 20121230 -9606 10174 SORBS3 - SCAM-1|SCAM1|SH3D4 HGNC:30907|MIM:610795|Ensembl:ENSG00000120896|HPRD:11535|Vega:OTTHUMG00000131728 8 8p21.3 sorbin and SH3 domain containing 3 protein-coding SORBS3 sorbin and SH3 domain containing 3 O sorbin and SH3 domain-containing protein 3|vinexin|vinexin beta (SH3-containing adaptor molecule-1) 20121230 -9606 10175 CNIH UNQ155/PRO181 CNIH1|CNIL|TGAM77 HGNC:19431|MIM:611287|Ensembl:ENSG00000100528|HPRD:16730|Vega:OTTHUMG00000152335 14 14q22.2 cornichon homolog (Drosophila) protein-coding CNIH cornichon homolog (Drosophila) O T-cell growth-associated molecule 77|protein cornichon homolog 20121230 -9606 10178 TENM1 RP5-1052M9.2 ODZ1|ODZ3|TEN-M1|TNM|TNM1 HGNC:8117|MIM:300588|Ensembl:ENSG00000009694|HPRD:06669|Vega:OTTHUMG00000022721 X Xq25 teneurin transmembrane protein 1 protein-coding TENM1 teneurin transmembrane protein 1 O odz (odd Oz/ten-m, Drosophila) homolog 3|odz, odd Oz/ten-m homolog 1|odz, odd Oz/ten-m homolog 1(Drosophila)|protein Odd Oz/ten-m homolog 1|ten-1|tenascin M1|tenascin-M1|teneurin 1|teneurin-1 20121230 -9606 10179 RBM7 - - HGNC:9904|MIM:612413|Ensembl:ENSG00000076053|HPRD:11488|Vega:OTTHUMG00000168270 11 11q23.1-q23.2 RNA binding motif protein 7 protein-coding RBM7 RNA binding motif protein 7 O RNA-binding motif protein 7|RNA-binding protein 7 20121230 -9606 10180 RBM6 - 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 HGNC:9903|MIM:606886|Ensembl:ENSG00000004534|HPRD:06054|Vega:OTTHUMG00000156736 3 3p21.3 RNA binding motif protein 6 protein-coding RBM6 RNA binding motif protein 6 O RNA-binding motif protein 6|RNA-binding protein 6|RNA-binding protein DEF-3|lung cancer antigen NY-LU-12|lung cancer protooncogene 11 20121230 -9606 10181 RBM5 H37 G15|LUCA15|RMB5 HGNC:9902|MIM:606884|Ensembl:ENSG00000003756|HPRD:06052|Vega:OTTHUMG00000156785 3 3p21.3 RNA binding motif protein 5 protein-coding RBM5 RNA binding motif protein 5 O RNA-binding protein 5|putative tumor suppressor LUCA15|renal carcinoma antigen NY-REN-9 20121230 -9606 10184 LHFPL2 - - HGNC:6588|MIM:609718|Ensembl:ENSG00000145685|HPRD:17272 5 5q14.1 lipoma HMGIC fusion partner-like 2 protein-coding LHFPL2 lipoma HMGIC fusion partner-like 2 O LHFP-like protein 2|lipoma HMGIC fusion partner-like 2 protein 20121230 -9606 10186 LHFP - - HGNC:6586|MIM:606710|Ensembl:ENSG00000183722|HPRD:09464|Vega:OTTHUMG00000016767 13 13q12 lipoma HMGIC fusion partner protein-coding LHFP lipoma HMGIC fusion partner O - 20121230 -9606 10187 VDAC1P5 - VDAC3|VDAC5P HGNC:12676 12 12q13.2 voltage-dependent anion channel 1 pseudogene 5 pseudo VDAC1P5 voltage-dependent anion channel 1 pseudogene 5 O - 20121230 -9606 10188 TNK2 - ACK|ACK-1|ACK1|p21cdc42Hs HGNC:19297|MIM:606994|Ensembl:ENSG00000061938|HPRD:06104|Vega:OTTHUMG00000155737 3 3q29 tyrosine kinase, non-receptor, 2 protein-coding TNK2 tyrosine kinase, non-receptor, 2 O activated CDC42 kinase 1|activated Cdc42-associated kinase 1|activated p21cdc42Hs kinase|tyrosine kinase non-receptor protein 2 20121230 -9606 10189 ALYREF - ALY|ALY/REF|BEF|REF|THOC4 HGNC:19071|MIM:604171|Ensembl:ENSG00000183684|HPRD:09168|Vega:OTTHUMG00000160470 17 17q25.3 Aly/REF export factor protein-coding ALYREF Aly/REF export factor O THO complex 4|THO complex subunit 4|ally of AML-1 and LEF-1|bZIP enhancing factor|bZIP-enhancing factor BEF|tho4|transcriptional coactivator Aly/REF 20121230 -9606 10190 TXNDC9 - APACD|PHLP3 HGNC:24110|MIM:612564|Ensembl:ENSG00000115514|HPRD:15592|Vega:OTTHUMG00000130641 2 2q11.2 thioredoxin domain containing 9 protein-coding TXNDC9 thioredoxin domain containing 9 O ATP binding protein associated with cell differentiation|ATP-binding protein associated with cell differentiation|protein 1-4|thioredoxin domain-containing protein 9 20121230 -9606 10193 RNF41 SBBI03 FLRF|NRDP1 HGNC:18401|Ensembl:ENSG00000181852|HPRD:11520|Vega:OTTHUMG00000170328 12 12q13.13 ring finger protein 41 protein-coding RNF41 ring finger protein 41 O E3 ubiquitin-protein ligase NRDP1|fetal liver ring finger|neuregulin receptor degradation protein-1 20121230 -9606 10194 TSHZ1 - CAA|NY-CO-33|SDCCAG33|TSH1 HGNC:10669|MIM:614427|Ensembl:ENSG00000179981|HPRD:15308|Vega:OTTHUMG00000132859 18 18q22.3 teashirt zinc finger homeobox 1 protein-coding TSHZ1 teashirt zinc finger homeobox 1 O antigen NY-CO-33|serologically defined colon cancer antigen 33|teashirt homolog 1 20121230 -9606 10195 ALG3 - CDG1D|CDGS4|D16Ertd36e|NOT56L|Not56 HGNC:23056|MIM:608750|Ensembl:ENSG00000214160|HPRD:03067|Vega:OTTHUMG00000156823 3 3q27.1 asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) protein-coding ALG3 asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) O Not56-like protein|asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase)|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)|asparagine-linked glycosylation protein 3 homolog|carbohydrate deficient glycoprotein syndrome type IV|dol-P-Man dependent alpha(1-3)-mannosyltransferase|dol-P-Man-dependent alpha(1-3)-mannosyltransferase|dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase|dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase|dolichyl-phosphate-mannose--glycolipid alpha-mannosyltransferase 20121230 -9606 10196 PRMT3 - HRMT1L3 HGNC:30163|MIM:603190|Ensembl:ENSG00000185238|HPRD:11934|Vega:OTTHUMG00000166022 11 11p15.1 protein arginine methyltransferase 3 protein-coding PRMT3 protein arginine methyltransferase 3 O HMT1 hnRNP methyltransferase-like 3|heterogeneous nuclear ribonucleoprotein methyltransferase-like 3|heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 3|protein arginine N-methyltransferase 3 20121230 -9606 10197 PSME3 - Ki|PA28-gamma|PA28G|PA28gamma|REG-GAMMA HGNC:9570|MIM:605129|Ensembl:ENSG00000131467|HPRD:05500|Vega:OTTHUMG00000180654 17 17q21 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) protein-coding PSME3 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) O 11S regulator complex gamma subunit|11S regulator complex subunit gamma|Ki antigen|Ki nuclear autoantigen|PA28 gamma variant 5|activator of multicatalytic protease subunit 3|proteasome activator 28 subunit gamma|proteasome activator 28-gamma|proteasome activator complex subunit 3 20121230 -9606 10198 MPHOSPH9 - MPP-9|MPP9 HGNC:7215|MIM:605501|Ensembl:ENSG00000051825|HPRD:12022|Vega:OTTHUMG00000168849 12 12q24.31 M-phase phosphoprotein 9 protein-coding MPHOSPH9 M-phase phosphoprotein 9 O - 20121230 -9606 10199 MPHOSPH10 - CT90|MPP10|MPP10P HGNC:7213|MIM:605503|Ensembl:ENSG00000124383|HPRD:10404|Vega:OTTHUMG00000129715 2 2p13.3 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) protein-coding MPHOSPH10 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) O U3 small nucleolar ribonucleoprotein protein MPP10|m phase phosphoprotein 10 20121230 -9606 10200 MPHOSPH6 - MPP|MPP-6|MPP6 HGNC:7214|MIM:605500|Ensembl:ENSG00000135698|HPRD:16111|Vega:OTTHUMG00000137632 16 16q23.3 M-phase phosphoprotein 6 protein-coding MPHOSPH6 M-phase phosphoprotein 6 O - 20121230 -9606 10201 NME6 - IPIA-ALPHA|NDK 6|NM23-H6 HGNC:20567|MIM:608294|Ensembl:ENSG00000172113|HPRD:09219|Vega:OTTHUMG00000133531 3 3p21 NME/NM23 nucleoside diphosphate kinase 6 protein-coding NME6 NME/NM23 nucleoside diphosphate kinase 6 O NDP kinase 6|inhibitor of p53-induced apoptosis-alpha|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)|nucleoside diphosphate kinase 6 20121230 -9606 10202 DHRS2 - HEP27|SDR25C1 HGNC:18349|Ensembl:ENSG00000100867|HPRD:07483|Vega:OTTHUMG00000028771 14 14q11.2 dehydrogenase/reductase (SDR family) member 2 protein-coding DHRS2 dehydrogenase/reductase (SDR family) member 2 O dehydrogenase/reductase SDR family member 2|dehydrogenase/reductase member 2|dicarbonyl reductase HEP27|protein D|short chain dehydrogenase/reductase family 25C, member 1|short-chain alcohol dehydrogenase family member 20121230 -9606 10203 CALCRL - CGRPR|CRLR HGNC:16709|MIM:114190|Ensembl:ENSG00000064989|HPRD:11809|Vega:OTTHUMG00000132636 2 2q32.1 calcitonin receptor-like protein-coding CALCRL calcitonin receptor-like O CGRP type 1 receptor|calcitonin gene-related peptide type 1 receptor|calcitonin receptor-like receptor 20121230 -9606 10204 NUTF2 - NTF2|PP15 HGNC:13722|MIM:605813|Ensembl:ENSG00000102898|HPRD:12050|Vega:OTTHUMG00000137540 16 16q22.1 nuclear transport factor 2 protein-coding NUTF2 nuclear transport factor 2 O NTF-2|placental protein 15 20121230 -9606 10205 MPZL2 UNQ606/PRO1192 EVA|EVA1 HGNC:3496|MIM:604873|Ensembl:ENSG00000149573|HPRD:05340|Vega:OTTHUMG00000166967 11 11q24 myelin protein zero-like 2 protein-coding MPZL2 myelin protein zero-like 2 O epithelial V-like antigen 1|myelin protein zero-like protein 2 20121230 -9606 10206 TRIM13 - CAR|DLEU5|LEU5|RFP2|RNF77 HGNC:9976|MIM:605661|Ensembl:ENSG00000204977|HPRD:10414|Vega:OTTHUMG00000016926 13 13q14 tripartite motif containing 13 protein-coding TRIM13 tripartite motif containing 13 O B-cell chronic lymphocytic leukemia tumor suppressor Leu5|CLL-associated RING finger|E3 ubiquitin-protein ligase TRIM13|RING finger protein 77|leukemia-associated protein 5|putative tumor suppressor RFP2|ret finger protein 2|tripartite motif protein 13|tripartite motif-containing 13|tripartite motif-containing protein 13 20121230 -9606 10207 INADL RP4-537K17.1 Cipp|InaD-like|PATJ|hINADL HGNC:28881|MIM:603199|Ensembl:ENSG00000132849|HPRD:04434|Vega:OTTHUMG00000008560 1 1p31.3 InaD-like (Drosophila) protein-coding INADL InaD-like (Drosophila) O PALS1-associated tight junction protein|PDZ domain protein|channel-interacting PDZ domain protein|inaD-like protein|inactivation no after-potential D-like protein|protein associated to tight junctions 20121230 -9606 10208 USPL1 - C13orf22|D13S106E|RP11-121O19.1|bA121O19.1 HGNC:20294|Ensembl:ENSG00000132952|HPRD:09833|Vega:OTTHUMG00000016675 13 13q12-q14 ubiquitin specific peptidase like 1 protein-coding USPL1 ubiquitin specific peptidase like 1 O SUMO-specific isopeptidase USPL1|highly charged protein|ubiquitin-specific peptidase-like protein 1 20121230 -9606 10209 EIF1 - A121|EIF-1|EIF1A|ISO1|SUI1 HGNC:3249|Ensembl:ENSG00000173812|HPRD:15449|Vega:OTTHUMG00000133492 17 17q21.2 eukaryotic translation initiation factor 1 protein-coding EIF1 eukaryotic translation initiation factor 1 O protein translation factor SUI1 homolog|sui1iso1 20121230 -9606 10210 TOPORS RP11-205M20.5 LUN|P53BP3|RP31|TP53BPL HGNC:21653|MIM:609507|Ensembl:ENSG00000197579|HPRD:11642|Vega:OTTHUMG00000019743 9 9p21 topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase protein-coding TOPORS topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase Topors|SUMO1-protein E3 ligase Topors|topoisomerase I-binding RING finger protein|tumor suppressor p53-binding protein 3 20121230 -9606 10211 FLOT1 DADB-118P11.2 - HGNC:3757|MIM:606998|Ensembl:ENSG00000137312|HPRD:06105|Vega:OTTHUMG00000031151 6 6p21.3 flotillin 1 protein-coding FLOT1 flotillin 1 O flotillin-1|integral membrane component of caveolae 20121230 -9606 10212 DDX39A - BAT1|BAT1L|DDX39|DDXL|URH49 HGNC:17821|Ensembl:ENSG00000123136|HPRD:10861|Vega:OTTHUMG00000182181 19 19p13.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A protein-coding DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A O ATP-dependent RNA helicase DDX39A|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 transcript|DEAD box protein 39|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 39|UAP56-related helicase, 49 kDa|nuclear RNA helicase URH49|nuclear RNA helicase, DECD variant of DEAD box family 20121230 -9606 10213 PSMD14 - PAD1|POH1|RPN11 HGNC:16889|MIM:607173|Ensembl:ENSG00000115233|HPRD:06208|Vega:OTTHUMG00000153882 2 2q24.2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 protein-coding PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 O 26S proteasome non-ATPase regulatory subunit 14|26S proteasome regulatory subunit rpn11|26S proteasome-associated PAD1 homolog 1 20121230 -9606 10214 SSX3 RP11-344N17.4 CT5.3 HGNC:11337|MIM:300325|Ensembl:ENSG00000165584|HPRD:02265|Vega:OTTHUMG00000021489 X Xp11.23 synovial sarcoma, X breakpoint 3 protein-coding SSX3 synovial sarcoma, X breakpoint 3 O cancer/testis antigen 5.3|protein SSX3 20121230 -9606 10215 OLIG2 - BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 HGNC:9398|MIM:606386|Ensembl:ENSG00000205927|HPRD:07334|Vega:OTTHUMG00000065032 21 21q22.11 oligodendrocyte lineage transcription factor 2 protein-coding OLIG2 oligodendrocyte lineage transcription factor 2 O basic domain, helix-loop-helix protein, class B, 1|class B basic helix-loop-helix protein 1|class E basic helix-loop-helix protein 19|human protein kinase C-binding protein RACK17|oligodendrocyte transcription factor 2|oligodendrocyte-specific bHLH transcription factor 2|protein kinase C-binding protein 2 20121230 -9606 10216 PRG4 GS1-174L6.2 CACP|HAPO|JCAP|MSF|SZP|bG174L6.2 HGNC:9364|MIM:604283|Ensembl:ENSG00000116690|HPRD:05047|Vega:OTTHUMG00000035574 1 1q25-q31 proteoglycan 4 protein-coding PRG4 proteoglycan 4 O articular superficial zone protein|bG174L6.2 (MSF: megakaryocyte stimulating factor )|lubricin|megakaryocyte stimulating factor|megakaryocyte-stimulating factor|superficial zone proteoglycan 20121230 -9606 10217 CTDSPL - C3orf8|HYA22|PSR1|RBSP3|SCP3 HGNC:16890|MIM:608592|Ensembl:ENSG00000144677|Vega:OTTHUMG00000155942 3 3p21.3 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like protein-coding CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like O CTD small phosphatase-like protein|CTDSP-like|NIF-like protein|NLI-interacting factor 1|RB protein serine phosphatase from chromosome 3|carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 3|nuclear LIM interactor-interacting factor 1|small C-terminal domain phosphatase 3|small CTD phosphatase 3 20121230 -9606 10218 ANGPTL7 UNQ313/PRO356 AngX|CDT6|RP4-647M16.2|dJ647M16.1 HGNC:24078|Ensembl:ENSG00000171819|HPRD:10818|Vega:OTTHUMG00000002002 1 1p36 angiopoietin-like 7 protein-coding ANGPTL7 angiopoietin-like 7 O angiopoietin-like factor (CDT6)|angiopoietin-like protein 7|angiopoietin-related protein 7|cornea-derived transcript 6 protein 20121230 -9606 10219 KLRG1 - 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE HGNC:6380|MIM:604874|Ensembl:ENSG00000139187|HPRD:16076|Vega:OTTHUMG00000168277 12 12p13.31 killer cell lectin-like receptor subfamily G, member 1 protein-coding KLRG1 killer cell lectin-like receptor subfamily G, member 1 O C-type lectin domain family 15 member A|C-type lectin domain family 15, member A|ITIM-containing receptor MAFA-L|MAFA-like receptor|killer cell lectin-like receptor subfamily G member 1|mast cell function-associated antigen (ITIM-containing) 20121230 -9606 10220 GDF11 - BMP-11|BMP11 HGNC:4216|MIM:603936|Ensembl:ENSG00000135414|HPRD:04895|Vega:OTTHUMG00000170188 12 12q13.2 growth differentiation factor 11 protein-coding GDF11 growth differentiation factor 11 O GDF-11|bone morphogenetic protein 11|growth/differentiation factor 11 20121230 -9606 10221 TRIB1 - C8FW|GIG2|SKIP1|TRB1 HGNC:16891|MIM:609461|Ensembl:ENSG00000173334|HPRD:09863|Vega:OTTHUMG00000165007 8 8q24.13 tribbles homolog 1 (Drosophila) protein-coding TRIB1 tribbles homolog 1 (Drosophila) O G-protein-coupled receptor induced protein|G-protein-coupled receptor-induced gene 2 protein|G-protein-coupled receptor-induced protein 2|GIG-2|TRB-1|phosphoprotein regulated by mitogenic pathways|tribbles homolog 1|tribbles-like protein 1 20121230 -9606 10223 GPA33 RP11-102C16.2 A33 HGNC:4445|MIM:602171|Ensembl:ENSG00000143167|HPRD:03704|Vega:OTTHUMG00000034435 1 1q24.1 glycoprotein A33 (transmembrane) protein-coding GPA33 glycoprotein A33 (transmembrane) O cell surface A33 antigen|transmembrane glycoprotein A33 20121230 -9606 10224 ZNF443 - ZK1 HGNC:20878|MIM:606697|Ensembl:ENSG00000180855|HPRD:09460|Vega:OTTHUMG00000156404 19 19p13.2 zinc finger protein 443 protein-coding ZNF443 zinc finger protein 443 O Kruppel-type zinc finger (C2H2)|krueppel-type zinc finger protein ZK1 20121230 -9606 10225 CD96 - TACTILE HGNC:16892|MIM:606037|Ensembl:ENSG00000153283|HPRD:06916|Vega:OTTHUMG00000159275 3 3q13.13-q13.2 CD96 molecule protein-coding CD96 CD96 molecule O CD96 antigen|T cell activation, increased late expression|T-cell surface protein tactile|cell surface antigen CD96|t cell-activated increased late expression protein 20121230 -9606 10226 PLIN3 - M6PRBP1|PP17|TIP47 HGNC:16893|MIM:602702|Ensembl:ENSG00000105355|HPRD:04080|Vega:OTTHUMG00000180249 19 19p13.3 perilipin 3 protein-coding PLIN3 perilipin 3 O 47 kDa MPR-binding protein|cargo selection protein TIP47|mannose-6-phosphate receptor-binding protein 1|perilipin-3|placental protein 17|tail-interacting protein, 47 kD 20121230 -9606 10227 MFSD10 RP11-520M5.2 TETRAN|TETTRAN HGNC:16894|MIM:610977|Ensembl:ENSG00000109736|HPRD:10265|Vega:OTTHUMG00000122081 4 4p16.3 major facilitator superfamily domain containing 10 protein-coding MFSD10 major facilitator superfamily domain containing 10 O major facilitator superfamily domain-containing protein 10|tetracycline transporter-like protein 20121230 -9606 10228 STX6 - - HGNC:11441|MIM:603944|Ensembl:ENSG00000135823|HPRD:07231|Vega:OTTHUMG00000035179 1 1q25.3 syntaxin 6 protein-coding STX6 syntaxin 6 O syntaxin-6 20121230 -9606 10229 COQ7 - CAT5|CLK-1|CLK1 HGNC:2244|MIM:601683|Ensembl:ENSG00000167186|HPRD:03401|Vega:OTTHUMG00000131455 16 16p12.3 coenzyme Q7 homolog, ubiquinone (yeast) protein-coding COQ7 coenzyme Q7 homolog, ubiquinone (yeast) O COQ7 coenzyme Q, 7 homolog ubiquinone|coenzyme Q biosynthesis protein 7 homolog|placental protein KG-20|timing protein clk-1 homolog|ubiquinone biosynthesis protein COQ7 homolog 20121230 -9606 10230 NBR2 - NCRNA00192 HGNC:20691|HPRD:10115 17 17q21 neighbor of BRCA1 gene 2 (non-protein coding) miscRNA NBR2 neighbor of BRCA1 gene 2 (non-protein coding) O - 20121230 -9606 10231 RCAN2 RP11-38F19.1 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 HGNC:3041|MIM:604876|Ensembl:ENSG00000172348|HPRD:05342|Vega:OTTHUMG00000014782 6 6p12.3 regulator of calcineurin 2 protein-coding RCAN2 regulator of calcineurin 2 O Down syndrome candidate region 1-like 1|Down syndrome critical region gene 1-like 1|calcipressin-2|myocyte-enriched calcineurin-interacting protein 2|thyroid hormone-responsive (skin fibroblasts)|thyroid hormone-responsive protein ZAKI-4 20121230 -9606 10232 MSLN - MPF|SMRP HGNC:7371|MIM:601051|Ensembl:ENSG00000102854|HPRD:03030|Vega:OTTHUMG00000047992 16 16p13.3 mesothelin protein-coding MSLN mesothelin O CAK1 antigen|megakaryocyte potentiating factor|pre-pro-megakaryocyte-potentiating factor|soluble MPF mesothelin related protein 20121230 -9606 10233 LRRC23 - LRPB7 HGNC:19138|Ensembl:ENSG00000010626|HPRD:09818|Vega:OTTHUMG00000156668 12 12p13 leucine rich repeat containing 23 protein-coding LRRC23 leucine rich repeat containing 23 O leucine-rich protein B7|leucine-rich repeat-containing protein 23 20121230 -9606 10234 LRRC17 UNQ3076/PRO9909 P37NB HGNC:16895|Ensembl:ENSG00000128606|HPRD:10059|Vega:OTTHUMG00000157210 7 7q22.1 leucine rich repeat containing 17 protein-coding LRRC17 leucine rich repeat containing 17 O 37 kDa leucine-rich repeat (LRR) protein|leucine-rich repeat-containing protein 17 20121230 -9606 10235 RASGRP2 - CALDAG-GEFI|CDC25L HGNC:9879|MIM:605577|Ensembl:ENSG00000068831|HPRD:09278|Vega:OTTHUMG00000045420 11 11q13 RAS guanyl releasing protein 2 (calcium and DAG-regulated) protein-coding RASGRP2 RAS guanyl releasing protein 2 (calcium and DAG-regulated) O F25B3.3 kinase-like protein|RAS guanyl nucleotide-releasing protein 2|RAS guanyl-releasing protein 2|calcium and DAG-regulated guanine nucleotide exchange factor I|calcium and diacylglycerol-regulated guanine nucleotide exchange factor I|cdc25-like protein|guanine exchange factor MCG7|hCDC25L 20121230 -9606 10236 HNRNPR - HNRPR|hnRNP R|hnRNP-R HGNC:5047|MIM:607201|Ensembl:ENSG00000125944|HPRD:06228|Vega:OTTHUMG00000003224 1 1p36.12 heterogeneous nuclear ribonucleoprotein R protein-coding HNRNPR heterogeneous nuclear ribonucleoprotein R O - 20121230 -9606 10237 SLC35B1 - UGTREL1 HGNC:20798|MIM:610790|Ensembl:ENSG00000121073|HPRD:10237|Vega:OTTHUMG00000161638 17 17q21.33 solute carrier family 35, member B1 protein-coding SLC35B1 solute carrier family 35, member B1 O UDP-galactose transporter related|UDP-galactose transporter-related protein 1|hUGTrel1|solute carrier family 35 member B1 20121230 -9606 10238 DCAF7 - AN11|HAN11|SWAN-1|WDR68 HGNC:30915|MIM:605973|Ensembl:ENSG00000136485|HPRD:09340 17 17q23.3 DDB1 and CUL4 associated factor 7 protein-coding DCAF7 DDB1 and CUL4 associated factor 7 O DDB1- and CUL4-associated factor 7|WD repeat domain 68|WD repeat-containing protein 68|WD repeat-containing protein An11 homolog|WD-repeat protein|human anthocyanin|seven-WD-repeat protein of the AN11 family-1 20121230 -9606 10239 AP3S2 - AP3S3|sigma3b HGNC:571|MIM:602416|Ensembl:ENSG00000157823|Ensembl:ENSG00000250021|HPRD:03880|Vega:OTTHUMG00000149811|Vega:OTTHUMG00000162161 15 15q26.1 adaptor-related protein complex 3, sigma 2 subunit protein-coding AP3S2 adaptor-related protein complex 3, sigma 2 subunit O AP-3 complex subunit sigma-2|AP-3 complex subunit sigma-3B|adaptor complex sigma3B|clathrin-associated/assembly/adaptor protein, small 4, 22-kD|sigma-3B-adaptin|sigma-adaptin 3b 20121230 -9606 10240 MRPS31 - IMOGN38|MRP-S31|S31mt HGNC:16632|MIM:611992|Ensembl:ENSG00000102738|HPRD:10098|Vega:OTTHUMG00000016777 13 13q14.11 mitochondrial ribosomal protein S31 protein-coding MRPS31 mitochondrial ribosomal protein S31 O 28S ribosomal protein S31, mitochondrial|imogen 38 20121230 -9606 10241 CALCOCO2 - NDP52 HGNC:29912|MIM:604587|Ensembl:ENSG00000136436|HPRD:06846|Vega:OTTHUMG00000160505 17 17q21.32 calcium binding and coiled-coil domain 2 protein-coding CALCOCO2 calcium binding and coiled-coil domain 2 O antigen nuclear dot 52 kDa protein|calcium-binding and coiled-coil domain-containing protein 2|nuclear domain 10 protein 52|nuclear domain 10 protein NDP52|nuclear dot protein 52 20121230 -9606 10242 KCNMB2 hCG_1646471 - HGNC:6286|MIM:605214|Ensembl:ENSG00000197584|HPRD:05557|Vega:OTTHUMG00000157264 3 3q26.32 potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding KCNMB2 potassium large conductance calcium-activated channel, subfamily M, beta member 2 O BK channel subunit beta-2|BKbeta2|MaxiK channel beta 2 subunit|calcium-activated potassium channel subunit beta-2|calcium-activated potassium channel, subfamily M subunit beta-2|charybdotoxin receptor subunit beta-2|hCG1646471|hbeta2|hbeta3|k(VCA)beta-2|large conductance calcium-activated potassium channel beta 2 subunit|large-conductance Ca2+-activated K+ channel beta2 subunit|maxi K channel subunit beta-2|slo-beta-2 20121230 -9606 10243 GPHN - GEPH|GPH|GPHRYN|HKPX1 HGNC:15465|MIM:603930|Ensembl:ENSG00000171723|HPRD:04893|Vega:OTTHUMG00000029785 14 14q23.3 gephyrin protein-coding GPHN gephyrin O - 20121230 -9606 10244 RABEPK RP11-65N13.1 RAB9P40|bA65N13.1|p40 HGNC:16896|MIM:605962|Ensembl:ENSG00000136933|HPRD:09337|Vega:OTTHUMG00000020674 9 9q33.3 Rab9 effector protein with kelch motifs protein-coding RABEPK Rab9 effector protein with kelch motifs O 40 kDa Rab9 effector protein|Rab9 effector p40|rab9 effector protein with kelch motifs 20121230 -9606 10245 TIMM17B JM3 DXS9822|TIM17B HGNC:17310|MIM:300249|Ensembl:ENSG00000126768|HPRD:02218|Vega:OTTHUMG00000034498 X Xp11.23 translocase of inner mitochondrial membrane 17 homolog B (yeast) protein-coding TIMM17B translocase of inner mitochondrial membrane 17 homolog B (yeast) O inner mitochondrial membrane preprotein translocase|mitochondrial import inner membrane translocase subunit Tim17-B 20121230 -9606 10246 SLC17A2 - NPT3 HGNC:10930|MIM:611049|Ensembl:ENSG00000112337|HPRD:10232|Vega:OTTHUMG00000014413 6 6p21.3 solute carrier family 17 (sodium phosphate), member 2 protein-coding SLC17A2 solute carrier family 17 (sodium phosphate), member 2 O Na(+)/PI cotransporter 3|sodium phosphate transporter 3|sodium-dependent phosphate transport protein 3|sodium/phosphate cotransporter 3|solute carrier family 17 (vesicular glutamate transporter), member 2|solute carrier family 17 member 2 20121230 -9606 10247 HRSP12 - P14.5|PSP|UK114 HGNC:16897|MIM:602487|Ensembl:ENSG00000132541|HPRD:03924|Vega:OTTHUMG00000164670 8 8q22 heat-responsive protein 12 protein-coding HRSP12 heat-responsive protein 12 O 14.5 kDa translational inhibitor protein|UK114 antigen homolog|perchloric acid-soluble protein|ribonuclease UK114|translational inhibitor p14.5|translational inhibitor protein p14.5 20121230 -9606 10248 POP7 tcag7.985 0610037N12Rik|RPP2|RPP20 HGNC:19949|MIM:606113|Ensembl:ENSG00000172336|HPRD:09357|Vega:OTTHUMG00000044311 7 7q22 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) protein-coding POP7 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) O POP7 (processing of precursor, S. cerevisiae) homolog|RNaseP protein p20|hPOP7|processing of precursor 7, ribonuclease P subunit|ribonuclease P protein subunit p20|ribonucleases P/MRP protein subunit POP7 homolog 20121230 -9606 10249 GLYAT - ACGNAT|CAT|GAT HGNC:13734|MIM:607424|Ensembl:ENSG00000149124|HPRD:07603|Vega:OTTHUMG00000167429 11 11q12.1 glycine-N-acyltransferase protein-coding GLYAT glycine-N-acyltransferase O AAc|HRP-1(CLP)|acyl-CoA:glycine N-acyltransferase|aralkyl acyl-CoA N-acyltransferase|aralkyl acyl-CoA:amino acid N-acyltransferase|aralkyl-CoA N-acyltransferase|benzoyl-coenzyme A:glycine N-acyltransferase|glycine N-acyltransferase|glycine N-benzoyltransferase 20121230 -9606 10250 SRRM1 - 160-KD|POP101|SRM160 HGNC:16638|MIM:605975|Ensembl:ENSG00000133226|HPRD:10441|Vega:OTTHUMG00000003320 1 1p36.11 serine/arginine repetitive matrix 1 protein-coding SRRM1 serine/arginine repetitive matrix 1 O SR-related nuclear matrix protein of 160 kDa|Ser/Arg-related nuclear matrix protein|serine/arginine repetitive matrix protein 1 20121230 -9606 10251 SPRY3 - HSPRY3|spry-3 HGNC:11271|MIM:300531|Ensembl:ENSG00000168939|HPRD:03917|Vega:OTTHUMG00000022675 X|Y Xq28 and Yq12 sprouty homolog 3 (Drosophila) protein-coding SPRY3 sprouty homolog 3 (Drosophila) O antagonist of FGF signaling|protein sprouty homolog 3 20121230 -9606 10252 SPRY1 - hSPRY1 HGNC:11269|MIM:602465|Ensembl:ENSG00000164056|HPRD:06782|Vega:OTTHUMG00000133071 4 4q28.1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) protein-coding SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) O protein sprouty homolog 1|sprouty, Drosophila, homolog of, 1 (antagonist of FGF signaling)|spry-1 20121230 -9606 10253 SPRY2 - hSPRY2 HGNC:11270|MIM:602466|Ensembl:ENSG00000136158|HPRD:03916|Vega:OTTHUMG00000017140 13 13q31.1 sprouty homolog 2 (Drosophila) protein-coding SPRY2 sprouty homolog 2 (Drosophila) O protein sprouty homolog 2|sprouty 2|spry-2 20121230 -9606 10254 STAM2 - Hbp|STAM2A|STAM2B HGNC:11358|MIM:606244|Ensembl:ENSG00000115145|HPRD:05876|Vega:OTTHUMG00000131885 2 2q23.3 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 protein-coding STAM2 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 O HSE1 homolog|Hrs-binding protein|STAM-2|STAM-like protein containing SH3 and ITAM domains 2|signal transducing adapter molecule 2 20121230 -9606 10255 HCG9 DASS-101N5.10-001 HCGIX|HCGIX4 HGNC:21243|HPRD:17092 6 6p21.3 HLA complex group 9 (non-protein coding) miscRNA HCG9 HLA complex group 9 (non-protein coding) O - 20121230 -9606 10256 CNKSR1 - CNK|CNK1|KSR HGNC:19700|MIM:603272|Ensembl:ENSG00000142675|Vega:OTTHUMG00000007541 1 1p36.11 connector enhancer of kinase suppressor of Ras 1 protein-coding CNKSR1 connector enhancer of kinase suppressor of Ras 1 O CNK homolog protein 1|connector enhancer of KSR 1|connector enhancer of kinase suppressor of ras 1|hCNK1 20121230 -9606 10257 ABCC4 RP11-74A12.1 EST170205|MOAT-B|MOATB|MRP4 HGNC:55|MIM:605250|Ensembl:ENSG00000125257|HPRD:05583|Vega:OTTHUMG00000017216 13 13q32 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 O ATP-binding cassette sub-family C member 4|MRP/cMOAT-related ABC transporter|bA464I2.1 (ATP-binding cassette, sub-family C (CFTR/MRP), member 4)|canalicular multispecific organic anion transporter (ABC superfamily)|multi-specific organic anion transporter B|multidrug resistance-associated protein 4|multispecific organic anion transporter B 20121230 -9606 10260 DENND4A - IRLB|MYCPBP HGNC:24321|MIM:600382|Ensembl:ENSG00000174485|HPRD:02662|Vega:OTTHUMG00000172635 15 15q22.31 DENN/MADD domain containing 4A protein-coding DENND4A DENN/MADD domain containing 4A O C-myc promoter-binding protein|DENN domain-containing protein 4A|c-myc promoter binding protein 20121230 -9606 10261 IGSF6 - DORA HGNC:5953|MIM:606222|Ensembl:ENSG00000140749|HPRD:06938|Vega:OTTHUMG00000090709 16 16p12.2 immunoglobulin superfamily, member 6 protein-coding IGSF6 immunoglobulin superfamily, member 6 O down-regulated by activation (immunoglobulin superfamily)|immunoglobulin superfamily member 6 20121230 -9606 10262 SF3B4 RP11-196G18.20-002 AFD1|Hsh49|SAP49|SF3b49 HGNC:10771|MIM:605593|Ensembl:ENSG00000143368|HPRD:12028|Vega:OTTHUMG00000012208 1 1q21.2 splicing factor 3b, subunit 4, 49kDa protein-coding SF3B4 splicing factor 3b, subunit 4, 49kDa O SAP 49|SF3b50|pre-mRNA-splicing factor SF3b 49 kDa subunit|spliceosomal protein|spliceosome-associated protein (U2 snRNP)|spliceosome-associated protein 49|splicing factor 3B subunit 4 20121230 -9606 10263 CDK2AP2 - DOC-1R|p14 HGNC:30833|Ensembl:ENSG00000167797|HPRD:13242|Vega:OTTHUMG00000167676 11 11q13 cyclin-dependent kinase 2 associated protein 2 protein-coding CDK2AP2 cyclin-dependent kinase 2 associated protein 2 O CDK2-associated protein 2|DOC-1-related protein|cyclin-dependent kinase 2-associated protein 2|tumor suppressor deleted in oral cancer related 1 20121230 -9606 10265 IRX5 - HMMS|IRX-2a|IRXB2 HGNC:14361|MIM:606195|Ensembl:ENSG00000176842|HPRD:08395|Vega:OTTHUMG00000133201 16 16q12.2 iroquois homeobox 5 protein-coding IRX5 iroquois homeobox 5 O homeodomain protein IRX-2A|homeodomain protein IRXB2|iroquois-class homeodomain protein IRX-5 20121230 -9606 10266 RAMP2 - - HGNC:9844|MIM:605154|Ensembl:ENSG00000131477|HPRD:05516|Vega:OTTHUMG00000180648 17 17q12-q21.1 receptor (G protein-coupled) activity modifying protein 2 protein-coding RAMP2 receptor (G protein-coupled) activity modifying protein 2 O CRLR activity-modifying protein 2|calcitonin receptor-like receptor activity modifying protein 2|calcitonin-receptor-like receptor activity-modifying protein 2|receptor (calcitonin) activity modifying protein 2|receptor activity modifying protein 2|receptor activity-modifying protein 2|receptor-activity-modifying protein 2 20121230 -9606 10267 RAMP1 - - HGNC:9843|MIM:605153|Ensembl:ENSG00000132329|HPRD:05515|Vega:OTTHUMG00000133337 2 2q36-q37.1 receptor (G protein-coupled) activity modifying protein 1 protein-coding RAMP1 receptor (G protein-coupled) activity modifying protein 1 O CRLR activity-modifying protein 1|calcitonin receptor-like receptor activity modifying protein 1|calcitonin-receptor-like receptor activity-modifying protein 1|receptor (calcitonin) activity modifying protein 1|receptor activity modifying protein 1|receptor activity-modifying protein 1 20121230 -9606 10268 RAMP3 - - HGNC:9845|MIM:605155|Ensembl:ENSG00000122679|HPRD:05517|Vega:OTTHUMG00000023729 7 7p13-p12 receptor (G protein-coupled) activity modifying protein 3 protein-coding RAMP3 receptor (G protein-coupled) activity modifying protein 3 O CRLR activity-modifying protein 3|calcitonin receptor-like receptor activity modifying protein 3|calcitonin-receptor-like receptor activity-modifying protein 3|receptor (calcitonin) activity modifying protein 3|receptor activity modifying protein 3|receptor activity-modifying protein 3|receptor-activity-modifying protein 3 20121230 -9606 10269 ZMPSTE24 - FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p HGNC:12877|MIM:606480|Ensembl:ENSG00000084073|HPRD:07349|Vega:OTTHUMG00000005762 1 1p34 zinc metallopeptidase STE24 protein-coding ZMPSTE24 zinc metallopeptidase STE24 O CAAX prenyl protease 1 homolog|farnesylated proteins-converting enzyme 1|prenyl protein-specific endoprotease 1|zinc metallopeptidase STE24 homolog|zinc metalloproteinase Ste24 homolog 20121230 -9606 10270 AKAP8 - AKAP 95|AKAP-8|AKAP-95|AKAP95 HGNC:378|MIM:604692|Ensembl:ENSG00000105127|HPRD:05258 19 19p13.1 A kinase (PRKA) anchor protein 8 protein-coding AKAP8 A kinase (PRKA) anchor protein 8 O A-kinase anchor protein 8|A-kinase anchor protein, 95kDa 20121230 -9606 10272 FSTL3 UNQ674/PRO1308 FLRG|FSRP HGNC:3973|MIM:605343|Ensembl:ENSG00000070404|HPRD:05632|Vega:OTTHUMG00000180593 19 19p13 follistatin-like 3 (secreted glycoprotein) protein-coding FSTL3 follistatin-like 3 (secreted glycoprotein) O follistatin-like protein 3|follistatin-related gene protein|follistatin-related protein 3 20121230 -9606 10273 STUB1 LA16c-313D11.6 CHIP|HSPABP2|NY-CO-7|SDCCAG7|UBOX1 HGNC:11427|MIM:607207|Ensembl:ENSG00000103266|HPRD:06232|Vega:OTTHUMG00000121140 16 16p13.3 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase protein-coding STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase O CLL-associated antigen KW-8|E3 ubiquitin-protein ligase CHIP|STIP1 homology and U box-containing protein 1|antigen NY-CO-7|carboxy terminus of Hsp70-interacting protein|heat shock protein A binding protein 2 (c-terminal)|serologically defined colon cancer antigen 7 20121230 -9606 10274 STAG1 - SA1|SCC3A HGNC:11354|MIM:604358|Ensembl:ENSG00000118007|HPRD:05076|Vega:OTTHUMG00000159798 3 3q22.3 stromal antigen 1 protein-coding STAG1 stromal antigen 1 O SCC3 homolog 1|cohesin subunit SA-1|nuclear protein stromal antigen 1 20121230 -9606 10276 NET1 RP11-116G8.1 ARHGEF8|NET1A HGNC:14592|MIM:606450|Ensembl:ENSG00000173848|HPRD:07342|Vega:OTTHUMG00000017596 10 10p15 neuroepithelial cell transforming 1 protein-coding NET1 neuroepithelial cell transforming 1 O Rho guanine nucleotide exchange factor (GEF) 8|guanine nucleotide regulatory protein (oncogene)|neuroepithelial cell-transforming gene 1 protein|neuroepithelioma transforming gene 1|p65 Net1 proto-oncogene protein|small GTP-binding protein regulator 20121230 -9606 10277 UBE4B - E4|HDNB1|UBOX3|UFD2|UFD2A HGNC:12500|MIM:613565|Ensembl:ENSG00000130939|HPRD:11659|Vega:OTTHUMG00000001797 1 1p36.3 ubiquitination factor E4B protein-coding UBE4B ubiquitination factor E4B O UFD2A-III/UBE4B-III splice isoform|homologous to yeast UFD2|homozygously deleted in neuroblastoma 1|homozygously deleted in neuroblastoma-1|ubiquitin conjugation factor E4 B|ubiquitin fusion degradation protein 2|ubiquitin-fusion degradation protein 2|ubiquitination factor E4B (UFD2 homolog, yeast)|ubiquitination factor E4B (homologous to yeast UFD2) 20121230 -9606 10278 EFS - CAS3|CASS3|EFS1|EFS2|HEFS|SIN HGNC:16898|MIM:609906|Ensembl:ENSG00000100842|HPRD:09932|Vega:OTTHUMG00000028741 14 14q11.2-q12 embryonal Fyn-associated substrate protein-coding EFS embryonal Fyn-associated substrate O Cas scaffolding protein family member 3|signal transduction protein (SH3 containing) 20121230 -9606 10279 PRSS16 XXbac-BPG24O18.5 TSSP HGNC:9480|MIM:607169|Ensembl:ENSG00000112812|HPRD:06205|Vega:OTTHUMG00000016167 6 6p21 protease, serine, 16 (thymus) protein-coding PRSS16 protease, serine, 16 (thymus) O serine protease 16|thymus specific serine peptidase|thymus-specific serine protease 20121230 -9606 10280 SIGMAR1 RP11-443P11.3 ALS16|OPRS1|SR-BP1|SRBP HGNC:8157|MIM:601978|Ensembl:ENSG00000147955|HPRD:03580|Vega:OTTHUMG00000019829 9 9p13.3 sigma non-opioid intracellular receptor 1 protein-coding SIGMAR1 sigma non-opioid intracellular receptor 1 O SIG-1R|SR-BP|SR31747 binding protein 1|aging-associated gene 8 protein|hSigmaR1|sigma 1-type opioid receptor|sigma1R 20121230 -9606 10281 DSCR4 - DCRB|DSCRB HGNC:3045|MIM:604829|Ensembl:ENSG00000184029|HPRD:05318|Vega:OTTHUMG00000086673 21 21q22.2 Down syndrome critical region gene 4 protein-coding DSCR4 Down syndrome critical region gene 4 O Down syndrome critical region protein 4|Down syndrome critical region protein B 20121230 -9606 10282 BET1 - HBET1 HGNC:14562|MIM:605456|Ensembl:ENSG00000105829|HPRD:16107|Vega:OTTHUMG00000023487 7 7q21.1-q22 blocked early in transport 1 homolog (S. cerevisiae) protein-coding BET1 blocked early in transport 1 homolog (S. cerevisiae) O BET1 homolog|Bet1p homolog|Golgi vesicular membrane trafficking protein p18|golgi vesicular membrane-trafficking protein p18 20121230 -9606 10283 CWC27 UNQ438/PRO871 NY-CO-10|SDCCAG10 HGNC:10664|Ensembl:ENSG00000153015|HPRD:11541|Vega:OTTHUMG00000074069 5 5q12.3 CWC27 spliceosome-associated protein homolog (S. cerevisiae) protein-coding CWC27 CWC27 spliceosome-associated protein homolog (S. cerevisiae) O PPIase CWC27|PPIase SDCCAG10|antigen NY-CO-10|peptidyl-prolyl cis-trans isomerase CWC27 homolog|peptidyl-prolyl cis-trans isomerase SDCCAG10|serologically defined colon cancer antigen 10 20121230 -9606 10284 SAP18 GIG38 2HOR0202|SAP18P HGNC:10530|MIM:602949|Ensembl:ENSG00000150459|HPRD:04256|Vega:OTTHUMG00000016535 13 13q12.11 Sin3A-associated protein, 18kDa protein-coding SAP18 Sin3A-associated protein, 18kDa O 18 kDa Sin3-associated polypeptide|cell growth inhibiting protein 38|cell growth-inhibiting gene 38 protein|cell growth-inhibiting protein 38|histone deacetlyase complex subunit SAP18|histone deacetylase complex subunit SAP18|sin3-associated polypeptide p18|sin3-associated polypeptide, 18 kDa|sin3-associated polypeptide, p18 20121230 -9606 10285 SMNDC1 - SMNR|SPF30 HGNC:16900|MIM:603519|Ensembl:ENSG00000119953|HPRD:04627|Vega:OTTHUMG00000019036 10 10q23 survival motor neuron domain containing 1 protein-coding SMNDC1 survival motor neuron domain containing 1 O 30 kDa splicing factor SMNrp|SMN-related protein|splicing factor 30, survival of motor neuron-related|survival motor neuron domain-containing protein 1|survival of motor neuron-related-splicing factor 30 20121230 -9606 10286 BCAS2 - DAM1|SPF27|Snt309 HGNC:975|MIM:605783|Ensembl:ENSG00000116752|HPRD:05777|Vega:OTTHUMG00000011898 1 1p13.2 breast carcinoma amplified sequence 2 protein-coding BCAS2 breast carcinoma amplified sequence 2 O DNA amplified in mammary carcinoma 1 protein|breast carcinoma-amplified sequence 2|pre-mRNA-splicing factor SPF27|spliceosome associated protein, amplified in breast cancer|spliceosome-associated protein SPF 27 20121230 -9606 10287 RGS19 - GAIP|RGSGAIP HGNC:13735|MIM:605071|Ensembl:ENSG00000171700|HPRD:05461|Vega:OTTHUMG00000033024 20 20q13.33 regulator of G-protein signaling 19 protein-coding RGS19 regulator of G-protein signaling 19 O G alpha interacting protein|G protein signalling regulator 19|G-alpha-interacting protein|guanine nucleotide binding protein alpha inhibiting activity polypeptide 3 interacting protein|regulator of G-protein signalling 19 20121230 -9606 10288 LILRB2 XXbac-BCX105G6.12-005 CD85D|ILT4|LILRA6|LIR-2|LIR2|MIR-10|MIR10 HGNC:6606|MIM:604815|Ensembl:ENSG00000131042|HPRD:11994|Vega:OTTHUMG00000064896 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 protein-coding LILRB2 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 O CD85 antigen-like family member D|ILT-4|Ig-like transcript 4|eukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6|immunoglobulin-like transcript 4|leukocyte immunoglobulin-like receptor 2|leukocyte immunoglobulin-like receptor subfamily B member 2|leukocyte immunoglobulin-like receptor subfamily B member 2 soluble isoform|monocyte/macrophage immunoglobulin-like receptor 10 20121230 -9606 10289 EIF1B - GC20 HGNC:30792|Ensembl:ENSG00000114784|HPRD:17032|Vega:OTTHUMG00000131388 3 3p22.1 eukaryotic translation initiation factor 1B protein-coding EIF1B eukaryotic translation initiation factor 1B O eukaryotic translation initiation factor 1b|protein translation factor SUI1 homolog GC20|translation factor sui1 homolog 20121230 -9606 10290 SPEG - APEG-1|APEG1|BPEG|SPEGalpha|SPEGbeta HGNC:16901|Ensembl:ENSG00000072195|HPRD:10653|Vega:OTTHUMG00000058925 2 2q35 SPEG complex locus protein-coding SPEG SPEG complex locus O aortic preferentially expressed gene 1|aortic preferentially expressed protein 1|nuclear protein, marker for differentiated aortic smooth muscle and down-regulated with vascular injury|striated muscle preferentially expressed protein kinase 20121230 -9606 10291 SF3A1 - PRP21|PRPF21|SAP114|SF3A120 HGNC:10765|MIM:605595|Ensembl:ENSG00000099995|HPRD:06903|Vega:OTTHUMG00000151005 22 22q12.2 splicing factor 3a, subunit 1, 120kDa protein-coding SF3A1 splicing factor 3a, subunit 1, 120kDa O SAP 114|pre-mRNA processing 21|pre-mRNA splicing factor SF3a (120 kDa subunit)|spliceosome-associated protein 114|splicing factor 3 subunit 1|splicing factor 3A subunit 1 20121230 -9606 10293 TRAIP - RNF206|TRIP HGNC:30764|MIM:605958|Ensembl:ENSG00000183763|HPRD:05811|Vega:OTTHUMG00000158269 3 3p21.31 TRAF interacting protein protein-coding TRAIP TRAF interacting protein O TRAF-interacting protein|ring finger protein 206 20121230 -9606 10294 DNAJA2 - CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 HGNC:14884|MIM:611322|Ensembl:ENSG00000069345|HPRD:07105|Vega:OTTHUMG00000133104 16 16q12.1 DnaJ (Hsp40) homolog, subfamily A, member 2 protein-coding DNAJA2 DnaJ (Hsp40) homolog, subfamily A, member 2 O HIRA interacting protein 4|HIRA-interacting protein 4|cell cycle progression 3 protein|cell cycle progression restoration gene 3 protein|dnaJ homolog subfamily A member 2|renal carcinoma antigen NY-REN-14 20121230 -9606 10295 BCKDK - BCKDKD|BDK HGNC:16902|MIM:614901|Ensembl:ENSG00000103507|HPRD:12523|Vega:OTTHUMG00000047356 16 16p11.2 branched chain ketoacid dehydrogenase kinase protein-coding BCKDK branched chain ketoacid dehydrogenase kinase O BCKD-kinase|BCKDHKIN|[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial|branched chain alpha-ketoacid dehydrogenase kinase 20121230 -9606 10296 MAEA HLC10 EMLP|EMP|GID9|HLC-10|PIG5 HGNC:13731|MIM:606801|Ensembl:ENSG00000090316|HPRD:08427|Vega:OTTHUMG00000160169 4 4p16.3 macrophage erythroblast attacher protein-coding MAEA macrophage erythroblast attacher O GID complex subunit 9, FYV10 homolog|cell proliferation-inducing gene 5 protein|erythroblast macrophage protein|human lung cancer oncogene 10 protein|lung cancer-related protein 10|proliferation-inducing gene 5 20121230 -9606 10297 APC2 - APCL HGNC:24036|MIM:612034|Ensembl:ENSG00000115266|HPRD:09802|Vega:OTTHUMG00000180059 19 19p13.3 adenomatosis polyposis coli 2 protein-coding APC2 adenomatosis polyposis coli 2 O adenomatous polyposis coli like|adenomatous polyposis coli protein 2 20121230 -9606 10298 PAK4 - - HGNC:16059|MIM:605451|Ensembl:ENSG00000130669|HPRD:05675 19 19q13.2 p21 protein (Cdc42/Rac)-activated kinase 4 protein-coding PAK4 p21 protein (Cdc42/Rac)-activated kinase 4 O PAK-4|p21(CDKN1A)-activated kinase 4|p21-activated kinase 4|protein kinase related to S. cerevisiae STE20, effector for Cdc42Hs|serine/threonine-protein kinase PAK 4 20121230 -9606 10299 MARCH6 - DOA10|MARCH-VI|RNF176|TEB4 HGNC:30550|MIM:613297|Ensembl:ENSG00000145495|HPRD:11095|Vega:OTTHUMG00000162027 5 5p15.2 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase protein-coding MARCH6 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MARCH6|RING finger protein 176|doa10 homolog|membrane-associated RING finger protein 6|membrane-associated RING-CH finger protein 6|membrane-associated RING-CH protein VI 20121230 -9606 10300 KATNB1 - KAT HGNC:6217|MIM:602703|Ensembl:ENSG00000140854|HPRD:04081|Vega:OTTHUMG00000133467 16 16q21 katanin p80 (WD repeat containing) subunit B 1 protein-coding KATNB1 katanin p80 (WD repeat containing) subunit B 1 O katanin (80 kDa)|katanin p80 (WD40-containing) subunit B 1|katanin p80 WD40-containing subunit B1|katanin p80 subunit B1|p80 katanin 20121230 -9606 10301 DLEU1 RP11-175B12.1 BCMS|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 HGNC:13747|MIM:605765|HPRD:16150 13 13q14.3 deleted in lymphocytic leukemia 1 (non-protein coding) miscRNA DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) O - 20121230 -9606 10302 SNAPC5 - SNAP19 HGNC:15484|MIM:605979|Ensembl:ENSG00000174446|HPRD:16183|Vega:OTTHUMG00000133195 15 15q22.31 small nuclear RNA activating complex, polypeptide 5, 19kDa protein-coding SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa O SNAPc 19 kDa subunit|SNAPc subunit 5|small nuclear RNA-activating complex polypeptide 5|snRNA-activating protein complex 19 kDa subunit|snRNA-activating protein complex subunit 5 20121230 -9606 10305 MMDK - MDK MIM:156232 2 2q24-q32 Mesomelic dysplasia, Kantaputra type unknown - - - - 20120622 -9606 10306 CTPP - ARCC2|CPP|CTPA|CTPP1|ECK MIM:116600 1 1pter-p36.1 Cataract, posterior polar unknown - - - - 20120622 -9606 10307 APBB3 - FE65L2|SRA HGNC:20708|MIM:602711|Ensembl:ENSG00000113108|HPRD:04089|Vega:OTTHUMG00000129504 5 5q31 amyloid beta (A4) precursor protein-binding, family B, member 3 protein-coding APBB3 amyloid beta (A4) precursor protein-binding, family B, member 3 O FE65-like protein 2|amyloid beta A4 precursor protein-binding family B member 3|amyloid precursor interacting protein|protein Fe65-like 2 20121230 -9606 10308 ZNF267 - HZF2 HGNC:13060|MIM:604752|Ensembl:ENSG00000185947|HPRD:06883|Vega:OTTHUMG00000176535 16 16p11.2 zinc finger protein 267 protein-coding ZNF267 zinc finger protein 267 O zinc finger (C2H2)|zinc finger protein 2|zinc finger protein HZF2 20121230 -9606 10309 CCNO - CCNU|UDG2 HGNC:18576|MIM:607752|Ensembl:ENSG00000152669|HPRD:06375|Vega:OTTHUMG00000162598 5 5q11.2 cyclin O protein-coding CCNO cyclin O O cyclin U|cyclin domain containing|cyclin-O 20121230 -9606 10311 DSCR3 - DCRA|DSCRA HGNC:3044|MIM:605298|Ensembl:ENSG00000157538|HPRD:10390|Vega:OTTHUMG00000086659 21 21q22.2 Down syndrome critical region gene 3 protein-coding DSCR3 Down syndrome critical region gene 3 O Down syndrome critical region protein 3|Down syndrome critical region protein A 20121230 -9606 10312 TCIRG1 - ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3 HGNC:11647|MIM:604592|Ensembl:ENSG00000110719|HPRD:05207|Vega:OTTHUMG00000167358 11 11q13.2 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 protein-coding TCIRG1 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 O ATPase, H+ transporting, 116kD|OC-116 kDa|T-cell immune response cDNA 7|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein a|V-ATPase 116-kDa|V-type proton ATPase 116 kDa subunit a|V-type proton ATPase 116 kDa subunit a isoform 3|osteoclastic proton pump 116 kDa subunit|specific 116-kDa vacuolar proton pump subunit|vacuolar proton translocating ATPase 116 kDa subunit A 20121230 -9606 10313 RTN3 - ASYIP|HAP|NSPL2|NSPLII|RTN3-A1 HGNC:10469|MIM:604249|Ensembl:ENSG00000133318|HPRD:18516|Vega:OTTHUMG00000168056 11 11q13 reticulon 3 protein-coding RTN3 reticulon 3 O ASY interacting protein|NSP-like protein 2|NSP-like protein II|homolog of ASY protein|neuroendocrine-specific protein-like 2|neuroendocrine-specific protein-like II|reticulon-3 20121230 -9606 10314 LANCL1 - GPR69A|p40 HGNC:6508|MIM:604155|Ensembl:ENSG00000115365|HPRD:16040|Vega:OTTHUMG00000132991 2 2q33-q35 LanC lantibiotic synthetase component C-like 1 (bacterial) protein-coding LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) O 40 kDa erythrocyte membrane protein|G protein-coupled receptor 69A|LanC (bacterial lantibiotic synthetase component C)-like 1|LanC (bacterial lantibiotic synthetase component)|lanC-like protein 1 20121230 -9606 10316 NMUR1 - (FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R HGNC:4518|MIM:604153|Ensembl:ENSG00000171596|HPRD:16039|Vega:OTTHUMG00000133225 2 2q37.1 neuromedin U receptor 1 protein-coding NMUR1 neuromedin U receptor 1 O G protein-coupled receptor 66|G-protein coupled receptor 66|G-protein coupled receptor FM-3|NMU-R1|neuromedin-U receptor 1 20121230 -9606 10317 B3GALT5 - B3GalT-V|B3GalTx|B3T5|GLCT5|beta3Gal-T5 HGNC:920|MIM:604066|Ensembl:ENSG00000183778|HPRD:06818|Vega:OTTHUMG00000086725 21 21q22.3 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 protein-coding B3GALT5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 O GlcNAc-beta-1,3-galactosyltransferase 5|UDP-Gal:beta-GlcNAc beta-1,3-galactosyltransferase 5|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 5|b3Gal-T5|beta-1,3-GalTase 5|beta-1,3-galactosyltransferase 5|beta-3-Gx-T5|beta3GalT5|homolog of C. elegans Bt toxin resistance gene bre-5 20121230 -9606 10318 TNIP1 - ABIN-1|NAF1|VAN|nip40-1 HGNC:16903|MIM:607714|Ensembl:ENSG00000145901|HPRD:09216|Vega:OTTHUMG00000163722 5 5q32-q33.1 TNFAIP3 interacting protein 1 protein-coding TNIP1 TNFAIP3 interacting protein 1 O A20-binding inhibitor of NF-kappa-B activation 1|HIV-1 Nef-interacting protein|Nef-associated factor 1 SNP|TNFAIP3-interacting protein 1|virion-associated nuclear shuttling protein 20121230 -9606 10319 LAMC3 RP11-143H20.1 OCCM HGNC:6494|MIM:604349|Ensembl:ENSG00000050555|HPRD:05069|Vega:OTTHUMG00000020819 9 9q31-q34 laminin, gamma 3 protein-coding LAMC3 laminin, gamma 3 O laminin subunit gamma-3|laminin-12 subunit gamma|laminin-14 subunit gamma|laminin-15 subunit gamma 20121230 -9606 10320 IKZF1 tcag7.1178 Hs.54452|IK1|IKAROS|LYF1|PRO0758|ZNFN1A1|hIk-1 HGNC:13176|MIM:603023|Ensembl:ENSG00000185811|HPRD:04318|Vega:OTTHUMG00000155907 7 7p13-p11.1 IKAROS family zinc finger 1 (Ikaros) protein-coding IKZF1 IKAROS family zinc finger 1 (Ikaros) O CLL-associated antigen KW-6|DNA-binding protein Ikaros|Ikaros (zinc finger protein)|ikaros family zinc finger protein 1|lymphoid transcription factor LyF-1|zinc finger protein, subfamily 1A, 1 (Ikaros) 20121230 -9606 10321 CRISP3 - Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 HGNC:16904|Ensembl:ENSG00000096006|HPRD:11788|Vega:OTTHUMG00000014823 6 6p12.3 cysteine-rich secretory protein 3 protein-coding CRISP3 cysteine-rich secretory protein 3 O cysteine-rich secretory protein-3|specific granule protein (28 kDa)|specific granule protein of 28 kDa 20121230 -9606 10322 SMYD5 - NN8-4AG|RAI15|RRG1|ZMYND23 HGNC:16258|Ensembl:ENSG00000135632|HPRD:18080|Vega:OTTHUMG00000150482 2 2p13.2 SMYD family member 5 protein-coding SMYD5 SMYD family member 5 O SET and MYND domain-containing protein 5|retinoic acid induced 15|retinoic acid responsive|retinoic acid-induced protein 15 20121230 -9606 10324 KBTBD10 - SARCOSIN HGNC:16905|MIM:607701|Ensembl:ENSG00000239474|HPRD:07610|Vega:OTTHUMG00000132205 2 2q31.1 kelch repeat and BTB (POZ) domain containing 10 protein-coding KBTBD10 kelch repeat and BTB (POZ) domain containing 10 O kel-like protein 23|kelch repeat and BTB domain-containing protein 10|kelch-related protein 1|sarcomeric muscle protein 20121230 -9606 10325 RRAGB RP11-465E19.1 RAGB|bA465E19.1 HGNC:19901|MIM:300725|Ensembl:ENSG00000083750|HPRD:06710|Vega:OTTHUMG00000021662 X Xp11.21 Ras-related GTP binding B protein-coding RRAGB Ras-related GTP binding B O GTP-binding protein ragB|rag B|ras-related GTP-binding protein B 20121230 -9606 10326 SIRPB1 RP4-576H24.1 CD172b|SIRP-BETA-1 HGNC:15928|MIM:603889|Ensembl:ENSG00000101307|HPRD:04866|Vega:OTTHUMG00000031676 20 20p13 signal-regulatory protein beta 1 protein-coding SIRPB1 signal-regulatory protein beta 1 O CD172 antigen-like family member B|signal-regulatory protein beta-1 20121230 -9606 10327 AKR1A1 RP4-697E16.2 ALDR1|ALR|ARM|DD3 HGNC:380|MIM:103830|Ensembl:ENSG00000117448|HPRD:00069|Vega:OTTHUMG00000007740 1 1p33-p32 aldo-keto reductase family 1, member A1 (aldehyde reductase) protein-coding AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase) O alcohol dehydrogenase|alcohol dehydrogenase [NADP(+)]|aldehyde reductase|aldo-keto reductase family 1 member A1|dihydrodiol dehydrogenase 3 20121230 -9606 10328 EMC8 - C16orf2|C16orf4|COX4NB|FAM158B|NOC4 HGNC:7864|MIM:604886|Ensembl:ENSG00000131148|HPRD:05350|Vega:OTTHUMG00000137647 16 16q24 ER membrane protein complex subunit 8 protein-coding EMC8 ER membrane protein complex subunit 8 O COX4 neighbor|family with sequence similarity 158, member B|neighbor of COX4 20121230 -9606 10329 TMEM5 - HP10481 HGNC:13530|MIM:605862|Ensembl:ENSG00000118600|HPRD:12057|Vega:OTTHUMG00000168730 12 12q14.2 transmembrane protein 5 protein-coding TMEM5 transmembrane protein 5 O putative type II membrane protein 20121230 -9606 10330 CNPY2 UNQ1943/PRO4426 HP10390|MSAP|TMEM4|ZSIG9 HGNC:13529|MIM:605861|Ensembl:ENSG00000257727|HPRD:12056|Vega:OTTHUMG00000170330 12 12q15 canopy 2 homolog (zebrafish) protein-coding CNPY2 canopy 2 homolog (zebrafish) O MIR-interacting saposin-like protein|protein canopy homolog 2|putative secreted protein Zsig9|transmembrane protein 4 20121230 -9606 10331 B3GNT3 UNQ637/PRO1266 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 HGNC:13528|MIM:605863|Ensembl:ENSG00000179913|HPRD:10431 19 19p13.1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 O UDP-Gal:beta-GlcNAc beta-1,3-galactosyltransferase 8|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 8|beta-1,3-GalTase 8|beta-1,3-Gn-T3|beta-1,3-N-acetylglucosaminyltransferase bGnT-3|beta-3-Gx-T8|beta3GalT8|core 1 extending beta-1,3-N-acetylglucosaminyltransferase|core1-beta3GlcNAcT|putative type II membrane protein|transmembrane protein 3 20121230 -9606 10332 CLEC4M - CD209L|CD299|DC-SIGN2|DC-SIGNR|DCSIGNR|HP10347|L-SIGN|LSIGN HGNC:13523|MIM:605872|Ensembl:ENSG00000104938|HPRD:12060 19 19p13 C-type lectin domain family 4, member M protein-coding CLEC4M C-type lectin domain family 4, member M O C-type lectin domain family 4 member M|CD209 antigen-like protein 1|CD299 antigen|DC-SIGN-related protein|dendritic cell-specific ICAM-3-grabbing non-integrin 2|liver/lymph node-specific ICAM-3 grabbing non-integrin|liver/lymph node-specific ICAM-3-grabbing non-integrin|mannose binding C-type lectin DC-SIGNR 20121230 -9606 10333 TLR6 - CD286 HGNC:16711|MIM:605403|Ensembl:ENSG00000174130|HPRD:05656|Vega:OTTHUMG00000128579 4 4p14 toll-like receptor 6 protein-coding TLR6 toll-like receptor 6 O - 20121230 -9606 10335 MRVI1 - IRAG|JAW1L HGNC:7237|MIM:604673|Ensembl:ENSG00000072952|HPRD:05242|Vega:OTTHUMG00000165773 11 11p15 murine retrovirus integration site 1 homolog protein-coding MRVI1 murine retrovirus integration site 1 homolog O IP3R-associated cGMP kinase substrate|JAW1-related protein MRVI1|inositol 1,4,5-triphosphate receptor-associated cGMP kinase substrate|inositol 1,4,5-trisphosphate receptor-associated cGMP kinase substrate|protein MRVI1 20121230 -9606 10336 PCGF3 - DONG1|RNF3|RNF3A HGNC:10066|Ensembl:ENSG00000185619|HPRD:11515|Vega:OTTHUMG00000119000 4 4p16.3 polycomb group ring finger 3 protein-coding PCGF3 polycomb group ring finger 3 O RING finger protein 3A|polycomb group RING finger protein 3|ring finger protein 3 20121230 -9606 10337 HIST1H4PS1 - H4FFP|dJ97D16.3|pH4/f HGNC:4786 6 6p22.1 histone cluster 1, H4, pseudogene 1 pseudo HIST1H4PS1 histone cluster 1, H4, pseudogene 1 O - 20121230 -9606 10338 HIST1H1PS2 - H3FEP|pH3/e HGNC:4770 6 6p21.3 histone cluster 1, H1, pseudogene 2 pseudo HIST1H1PS2 histone cluster 1, H1, pseudogene 2 O - 20121230 -9606 10340 HIST1H2BPS2 - H2BFIP|pH2B.i|pH2B/i HGNC:4754 6 6p22.1 histone cluster 1, H2b, pseudogene 2 pseudo HIST1H2BPS2 histone cluster 1, H2b, pseudogene 2 O - 20121230 -9606 10341 HIST1H2APS5 - H2AFFP|pH2A/f HGNC:4728 6 6p21.3 histone cluster 1, H2a, pseudogene 5 pseudo HIST1H2APS5 histone cluster 1, H2a, pseudogene 5 O - 20121230 -9606 10342 TFG - HMSNP|TF6|TRKT3 HGNC:11758|MIM:602498|Ensembl:ENSG00000114354|HPRD:03932|Vega:OTTHUMG00000159085 3 3q12.2 TRK-fused gene protein-coding TFG TRK-fused gene O TRK-fused gene protein|TRKT3 oncogene|protein TFG 20121230 -9606 10343 PKDREJ - - HGNC:9015|MIM:604670|Ensembl:ENSG00000130943|HPRD:05239|Vega:OTTHUMG00000150493 22 22q13.31 polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin) protein-coding PKDREJ polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin) O PKD and REJ homolog|polycystic kidney disease and receptor for egg jelly-related protein 20121230 -9606 10344 CCL26 UNQ216/PRO242 IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1 HGNC:10625|MIM:604697|Ensembl:ENSG00000006606|HPRD:05262|Vega:OTTHUMG00000130403 7 7q11.23 chemokine (C-C motif) ligand 26 protein-coding CCL26 chemokine (C-C motif) ligand 26 O C-C motif chemokine 26|CC chemokine IMAC|MIP-4-alpha|chemokine N1|eotaxin-3|macrophage inflammatory protein 4-alpha|small inducible cytokine A26|small inducible cytokine subfamily A (Cys-Cys), member 26|small-inducible cytokine A26|thymic stroma chemokine-1 20121230 -9606 10345 TRDN RP11-167I10.1 TDN|TRISK HGNC:12261|MIM:603283|Ensembl:ENSG00000186439|HPRD:04474|Vega:OTTHUMG00000015497 6 6q22.31 triadin protein-coding TRDN triadin O - 20121230 -9606 10346 TRIM22 - GPSTAF50|RNF94|STAF50 HGNC:16379|MIM:606559|Ensembl:ENSG00000132274|HPRD:05951|Vega:OTTHUMG00000066904 11 11p15 tripartite motif containing 22 protein-coding TRIM22 tripartite motif containing 22 O 50 kDa-stimulated trans-acting factor|E3 ubiquitin-protein ligase TRIM22|RING finger protein 94|staf-50|stimulated trans-acting factor (50 kDa)|tripartite binding motif 22|tripartite motif protein TRIM22|tripartite motif-containing 22|tripartite motif-containing protein 22 20121230 -9606 10347 ABCA7 - ABCA-SSN|ABCX HGNC:37|MIM:605414|Ensembl:ENSG00000064687|HPRD:09255|Vega:OTTHUMG00000167547 19 19p13.3 ATP-binding cassette, sub-family A (ABC1), member 7 protein-coding ABCA7 ATP-binding cassette, sub-family A (ABC1), member 7 O ATP-binding cassette sub-family A member 7|autoantigen SS-N|macrophage ABC transporter 20121230 -9606 10349 ABCA10 - EST698739 HGNC:30|MIM:612508|Ensembl:ENSG00000154263|HPRD:12400|Vega:OTTHUMG00000164716 17 17q24 ATP-binding cassette, sub-family A (ABC1), member 10 protein-coding ABCA10 ATP-binding cassette, sub-family A (ABC1), member 10 O ATP-binding cassette A10|ATP-binding cassette sub-family A member 10 20121230 -9606 10350 ABCA9 - EST640918 HGNC:39|MIM:612507|Ensembl:ENSG00000154258|HPRD:12401|Vega:OTTHUMG00000140371 17 17q24.2 ATP-binding cassette, sub-family A (ABC1), member 9 protein-coding ABCA9 ATP-binding cassette, sub-family A (ABC1), member 9 O ATP-binding cassette A9|ATP-binding cassette sub-family A member 9 20121230 -9606 10351 ABCA8 - - HGNC:38|MIM:612505|Ensembl:ENSG00000141338|HPRD:09790|Vega:OTTHUMG00000180192 17 17q24 ATP-binding cassette, sub-family A (ABC1), member 8 protein-coding ABCA8 ATP-binding cassette, sub-family A (ABC1), member 8 O ATP-binding cassette sub-family A member 8 20121230 -9606 10352 WARS2 - TrpRS HGNC:12730|MIM:604733|Ensembl:ENSG00000116874|HPRD:05295|Vega:OTTHUMG00000012335 1 1p12 tryptophanyl tRNA synthetase 2, mitochondrial protein-coding WARS2 tryptophanyl tRNA synthetase 2, mitochondrial O (Mt)TrpRS|tryptophan tRNA ligase 2, mitochondrial|tryptophan--tRNA ligase, mitochondrial|tryptophan-tRNA ligase|tryptophanyl-tRNA synthetase, mitochondrial 20121230 -9606 10354 HMGB1P5 - HMG-1|HMG1L5|HMGB1L15|HMGB1L5|HMGB1P2 HGNC:4997 3 3p24 high mobility group box 1 pseudogene 5 pseudo HMGB1P5 high mobility group box 1 pseudogene 5 O - 20121230 -9606 10355 HMGB1P4 - HMG1L4|HMG1L4P|HMGB1L4 HGNC:4996 2 2q32 high mobility group box 1 pseudogene 4 pseudo HMGB1P4 high mobility group box 1 pseudogene 4 O - 20121230 -9606 10356 HMGB1P3 - HMG1L3|HMGB1L3 HGNC:4995 2 2q35 high mobility group box 1 pseudogene 3 pseudo HMGB1P3 high mobility group box 1 pseudogene 3 O - 20121230 -9606 10357 HMGB1P1 - HMG1L1|HMG1L7|HMGB1L1|dJ579F20.1 HGNC:4993|HPRD:17109 20 20q13.32 high mobility group box 1 pseudogene 1 pseudo HMGB1P1 high mobility group box 1 pseudogene 1 O - 20121230 -9606 10360 NPM3 - PORMIN|TMEM123 HGNC:7931|MIM:606456|Ensembl:ENSG00000107833|HPRD:07346|Vega:OTTHUMG00000018942 10 10q24.31 nucleophosmin/nucleoplasmin 3 protein-coding NPM3 nucleophosmin/nucleoplasmin 3 O nucleophosmin/nucleoplasmin family, member 3|nucleoplasmin-3 20121230 -9606 10361 NPM2 - - HGNC:7930|MIM:608073|Ensembl:ENSG00000158806|HPRD:12160|Vega:OTTHUMG00000131129 8 8p21.3 nucleophosmin/nucleoplasmin 2 protein-coding NPM2 nucleophosmin/nucleoplasmin 2 O nucleoplasmin-2 20121230 -9606 10362 HMG20B - BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857 HGNC:5002|MIM:605535|Ensembl:ENSG00000064961|HPRD:05703|Vega:OTTHUMG00000150437 19 19p13.3 high mobility group 20B protein-coding HMG20B high mobility group 20B O BRCA2-associated factor 35|HMG box domain containing 2|HMG box-containing protein 20B|HMG domain-containing protein 2|HMG domain-containing protein HMGX2|SMARCE1-related protein|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E, member 1-related|Sox-like transcriptional factor|high-mobility group 20B|structural DNA-binding protein BRAF35 20121230 -9606 10363 HMG20A - HMGX1|HMGXB1 HGNC:5001|MIM:605534|Ensembl:ENSG00000140382|HPRD:16116|Vega:OTTHUMG00000143729 15 15q24 high mobility group 20A protein-coding HMG20A high mobility group 20A O HMG box domain containing 1|HMG box-containing protein 20A|HMG domain-containing protein 1|HMG domain-containing protein HMGX1|high mobility group protein 20A|high-mobility group 20A 20121230 -9606 10365 KLF2 - LKLF HGNC:6347|MIM:602016|Ensembl:ENSG00000127528|HPRD:03602|Vega:OTTHUMG00000182330 19 19p13.11 Kruppel-like factor 2 (lung) protein-coding KLF2 Kruppel-like factor 2 (lung) O Krueppel-like factor 2|Kruppel-like factor LKLF|lung Kruppel-like zinc finger transcription factor|lung krueppel-like factor 20121230 -9606 10367 MICU1 - CALC|CBARA1|EFHA3 HGNC:1530|MIM:605084|Ensembl:ENSG00000107745|HPRD:05471|Vega:OTTHUMG00000018437 10 10q22.1 mitochondrial calcium uptake 1 protein-coding MICU1 mitochondrial calcium uptake 1 O ara CALC|atopy related autoantigen|atopy-related autoantigen CALC|calcium uptake protein 1, mitochondrial|calcium-binding atopy-related autoantigen 1 20121230 -9606 10368 CACNG3 - - HGNC:1407|MIM:606403|Ensembl:ENSG00000006116|HPRD:05910|Vega:OTTHUMG00000131651 16 16p12.1 calcium channel, voltage-dependent, gamma subunit 3 protein-coding CACNG3 calcium channel, voltage-dependent, gamma subunit 3 O TARP gamma-3|neuronal voltage-gated calcium channel gamma-3 subunit|transmembrane AMPAR regulatory protein gamma-3|voltage-dependent calcium channel gamma-3 subunit|voltage-gated calcium channel gamma subunit 20121230 -9606 10369 CACNG2 - MRD10 HGNC:1406|MIM:602911|Ensembl:ENSG00000166862|HPRD:04220|Vega:OTTHUMG00000030612 22 22q13.1 calcium channel, voltage-dependent, gamma subunit 2 protein-coding CACNG2 calcium channel, voltage-dependent, gamma subunit 2 O TARP gamma-2|neuronal voltage-gated calcium channel gamma-2 subunit|stargazin|transmembrane AMPAR regulatory protein gamma-2|voltage-dependent calcium channel gamma-2 subunit 20121230 -9606 10370 CITED2 - ASD8|MRG-1|MRG1|P35SRJ|VSD2 HGNC:1987|MIM:602937|Ensembl:ENSG00000164442|HPRD:04245|Vega:OTTHUMG00000015691 6 6q23.3 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 O MSG-related protein 1|MSG1-related gene 1|cbp/p300-interacting transactivator 2|melanocyte-specific gene 1-related gene 1 20121230 -9606 10371 SEMA3A - COLL1|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 HGNC:10723|MIM:603961|Ensembl:ENSG00000075213|HPRD:04908|Vega:OTTHUMG00000023443 7 7p12.1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A O collapsin 1|semaphorin D|semaphorin III|semaphorin L|semaphorin-3A 20121230 -9606 10376 TUBA1B - K-ALPHA-1 HGNC:18809|MIM:602530|Ensembl:ENSG00000123416|HPRD:03960|Vega:OTTHUMG00000170410 12 12q13.12 tubulin, alpha 1b protein-coding TUBA1B tubulin, alpha 1b O alpha tubulin|alpha-tubulin ubiquitous|tubulin K-alpha-1|tubulin alpha-1B chain|tubulin alpha-ubiquitous chain|tubulin, alpha, ubiquitous 20121230 -9606 10379 IRF9 - IRF-9|ISGF3|ISGF3G|p48 HGNC:6131|MIM:147574|Ensembl:ENSG00000213928|HPRD:00960|Vega:OTTHUMG00000028799 14 14q11.2 interferon regulatory factor 9 protein-coding IRF9 interferon regulatory factor 9 O IFN-alpha-responsive transcription factor subunit|ISGF-3 gamma|ISGF3 p48 subunit|interferon-stimulated gene factor 3 gamma|interferon-stimulated transcription factor 3, gamma (48kD)|interferon-stimulated transcription factor 3, gamma 48kDa|transcriptional regulator ISGF3 subunit gamma 20121230 -9606 10380 BPNT1 - PIP HGNC:1096|MIM:604053|Ensembl:ENSG00000162813|HPRD:06814|Vega:OTTHUMG00000037435 1 1q41 3'(2'), 5'-bisphosphate nucleotidase 1 protein-coding BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 O 3'(2'),5'-bisphosphate nucleotidase 1|BPntase|PAP-inositol 1,4-phosphatase|PAP-inositol-1,4-phosphatase|bisphosphate 3'-nucleotidase 1 20121230 -9606 10381 TUBB3 - CDCBM|CFEOM3A|TUBB4|beta-4 HGNC:20772|MIM:602661|Ensembl:ENSG00000258947|HPRD:04044|Vega:OTTHUMG00000138985 16 16q24.3 tubulin, beta 3 class III protein-coding TUBB3 tubulin, beta 3 class III O class III beta-tubulin|tubulin beta-3 chain|tubulin beta-4 chain|tubulin beta-III 20121230 -9606 10382 TUBB4A - TUBB4|TUBB5|beta-5 HGNC:20774|MIM:602662|Ensembl:ENSG00000104833|HPRD:04045 19 19p13.3 tubulin, beta 4A class IVa protein-coding TUBB4A tubulin, beta 4A class IVa O class IVa beta-tubulin|tubulin 5 beta|tubulin beta-4 chain|tubulin beta-4A chain|tubulin, beta 4 class IVa|tubulin, beta, 5 20121230 -9606 10383 TUBB4B RP13-122B23.2 Beta2|TUBB2|TUBB2C HGNC:20771|MIM:602660|Ensembl:ENSG00000188229|HPRD:04043|Vega:OTTHUMG00000131783 9 9q34 tubulin, beta 4B class IVb protein-coding TUBB4B tubulin, beta 4B class IVb O class IVb beta tubulin|class IVb beta-tubulin|tubulin beta-2 chain|tubulin beta-2C chain|tubulin beta-4B chain|tubulin, beta 2C|tubulin, beta, 2 20121230 -9606 10384 BTN3A3 - BTF3 HGNC:1140|MIM:613595|Ensembl:ENSG00000111801|HPRD:12548|Vega:OTTHUMG00000014451 6 6p21.3 butyrophilin, subfamily 3, member A3 protein-coding BTN3A3 butyrophilin, subfamily 3, member A3 O butyrophilin 3|butyrophilin subfamily 3 member A3 20121230 -9606 10385 BTN2A2 - BT2.2|BTF2 HGNC:1137|MIM:613591|Ensembl:ENSG00000124508|HPRD:12545|Vega:OTTHUMG00000014452 6 6p22.1 butyrophilin, subfamily 2, member A2 protein-coding BTN2A2 butyrophilin, subfamily 2, member A2 O butyrophilin 2|butyrophilin subfamily 2 member A2 20121230 -9606 10386 MHW1 - - MIM:603663 4 4p Mental health wellness 1 unknown - - - - 20120622 -9606 10388 SYCP2 RP5-884F15.1 SCP2 HGNC:11490|MIM:604105|Ensembl:ENSG00000196074|HPRD:06822|Vega:OTTHUMG00000032872 20 20q13.33 synaptonemal complex protein 2 protein-coding SYCP2 synaptonemal complex protein 2 O SCP-2|hsSCP2|synaptonemal complex lateral element protein 20121230 -9606 10389 SCML2 RP5-1129A6.3 - HGNC:10581|MIM:300208|Ensembl:ENSG00000102098|HPRD:02195|Vega:OTTHUMG00000021212 X Xp22 sex comb on midleg-like 2 (Drosophila) protein-coding SCML2 sex comb on midleg-like 2 (Drosophila) O sex comb on midleg-like protein 2 20121230 -9606 10390 CEPT1 PRO1101 - HGNC:24289|Ensembl:ENSG00000134255|HPRD:13024|Vega:OTTHUMG00000012357 1 1p13.3 choline/ethanolamine phosphotransferase 1 protein-coding CEPT1 choline/ethanolamine phosphotransferase 1 O choline/ethanolaminephosphotransferase|choline/ethanolaminephosphotransferase 1|hCEPT1 20121230 -9606 10391 CORO2B - CLIPINC HGNC:2256|MIM:605002|Ensembl:ENSG00000103647|HPRD:05416|Vega:OTTHUMG00000133288 15 15q23 coronin, actin binding protein, 2B protein-coding CORO2B coronin, actin binding protein, 2B O clipin C|coronin-2B|coronin-like protein C 20121230 -9606 10392 NOD1 - CARD4|CLR7.1|NLRC1 HGNC:16390|MIM:605980|Ensembl:ENSG00000106100|HPRD:05815|Vega:OTTHUMG00000023923 7 7p15-p14 nucleotide-binding oligomerization domain containing 1 protein-coding NOD1 nucleotide-binding oligomerization domain containing 1 O NLR family, CARD domain containing 1|caspase recruitment domain family, member 4|caspase recruitment domain-containing protein 4|nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 1|nucleotide-binding oligomerization domain-containing protein 1 20121230 -9606 10393 ANAPC10 - APC10|DOC1 HGNC:24077|MIM:613745|Ensembl:ENSG00000164162|HPRD:16488|Vega:OTTHUMG00000161477 4 4q31 anaphase promoting complex subunit 10 protein-coding ANAPC10 anaphase promoting complex subunit 10 O anaphase-promoting complex subunit 10|cyclosome subunit 10 20121230 -9606 10394 PRG3 UNQ486/PRO1002 MBP2|MBPH HGNC:9363|MIM:606814|Ensembl:ENSG00000156575|HPRD:08434|Vega:OTTHUMG00000167026 11 11q12 proteoglycan 3 protein-coding PRG3 proteoglycan 3 O eosinophil major basic protein homolog|prepro-MBPH|prepro-major basic protein homolog 20121230 -9606 10395 DLC1 - ARHGAP7|HP|STARD12|p122-RhoGAP HGNC:2897|MIM:604258|Ensembl:ENSG00000164741|HPRD:05035|Vega:OTTHUMG00000090825 8 8p22 deleted in liver cancer 1 protein-coding DLC1 deleted in liver cancer 1 O Rho-GTPase-activating protein 7|START domain-containing protein 12|StAR-related lipid transfer (START) domain containing 12|deleted in liver cancer 1 protein|deleted in liver cancer 1 variant 2|rho GTPase-activating protein 7|rho-type GTPase-activating protein 7 20121230 -9606 10396 ATP8A1 - ATPASEII|ATPIA|ATPP2 HGNC:13531|MIM:609542|Ensembl:ENSG00000124406|HPRD:16527|Vega:OTTHUMG00000099403 4 4p13 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 protein-coding ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 O ATPase II|ATPase class I type 8A member 1|aminophospholipid translocase|chromaffin granule ATPase II|probable phospholipid-transporting ATPase IA 20121230 -9606 10397 NDRG1 - CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 HGNC:7679|MIM:605262|Ensembl:ENSG00000104419|HPRD:05586|Vega:OTTHUMG00000164441 8 8q24.3 N-myc downstream regulated 1 protein-coding NDRG1 N-myc downstream regulated 1 O N-myc downstream-regulated gene 1 protein|differentiation-related gene 1 protein|nickel-specific induction protein Cap43|protein NDRG1|protein regulated by oxygen-1|reducing agents and tunicamycin-responsive protein 20121230 -9606 10398 MYL9 RP5-977B1.9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 HGNC:15754|MIM:609905|Ensembl:ENSG00000101335|HPRD:17619|Vega:OTTHUMG00000032387 20 20q11.23 myosin, light chain 9, regulatory protein-coding MYL9 myosin, light chain 9, regulatory O 20 kDa myosin light chain|myosin RLC|myosin regulatory light chain 1|myosin regulatory light chain 2, smooth muscle isoform|myosin regulatory light chain 9|myosin regulatory light chain MRLC1|myosin regulatory light polypeptide 9|myosin, light polypeptide 9, regulatory 20121230 -9606 10399 GNB2L1 HLC7 Gnb2-rs1|H12.3|HLC-7|PIG21|RACK1 HGNC:4399|MIM:176981|Ensembl:ENSG00000204628|HPRD:01503|Vega:OTTHUMG00000163380 5 5q35.3 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 protein-coding GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 O cell proliferation-inducing gene 21 protein|guanine nucleotide-binding protein subunit beta-2-like 1|guanine nucleotide-binding protein subunit beta-like protein 12.3|human lung cancer oncogene 7 protein|lung cancer oncogene 7|proliferation-inducing gene 21|protein homologous to chicken B complex protein, guanine nucleotide binding|receptor for activated C kinase 1|receptor of activated protein kinase C 1 20121230 -9606 10400 PEMT - PEAMT|PEMPT|PEMT2|PNMT HGNC:8830|MIM:602391|Ensembl:ENSG00000133027|HPRD:03862|Vega:OTTHUMG00000059290 17 17p11.2 phosphatidylethanolamine N-methyltransferase protein-coding PEMT phosphatidylethanolamine N-methyltransferase O - 20121230 -9606 10401 PIAS3 - ZMIZ5 HGNC:16861|MIM:605987|Ensembl:ENSG00000131788|HPRD:09068|Vega:OTTHUMG00000013750 1 1q21 protein inhibitor of activated STAT, 3 protein-coding PIAS3 protein inhibitor of activated STAT, 3 O E3 SUMO-protein ligase PIAS3|protein inhibitor of activated STAT protein 3|zinc finger, MIZ-type containing 5 20121230 -9606 10402 ST3GAL6 - SIAT10|ST3GALVI HGNC:18080|MIM:607156|Ensembl:ENSG00000064225|HPRD:06195|Vega:OTTHUMG00000159047 3 3q12.1 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 O CMP-NeuAc:beta-galactoside alpha-2,3-sialyltransferase VI|alpha2,3-sialyltransferase ST3Gal VI|sialyltransferase 10 (alpha-2,3-sialyltransferase VI)|type 2 lactosamine alpha-2,3-sialyltransferase 20121230 -9606 10403 NDC80 - HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 HGNC:16909|MIM:607272|Ensembl:ENSG00000080986|HPRD:06277|Vega:OTTHUMG00000131483 18 18p11.32 NDC80 kinetochore complex component homolog (S. cerevisiae) protein-coding NDC80 NDC80 kinetochore complex component homolog (S. cerevisiae) O NDC80 homolog, kinetochore complex component|highly expressed in cancer protein|highly expressed in cancer, rich in leucine heptad repeats|kinetochore associated 2|kinetochore protein Hec1|kinetochore protein NDC80 homolog|kinetochore-associated protein 2|retinoblastoma-associated protein HEC 20121230 -9606 10404 CPQ - LDP|PGCP HGNC:16910|Ensembl:ENSG00000104324|HPRD:07140|Vega:OTTHUMG00000164690 8 8q22.2 carboxypeptidase Q protein-coding CPQ carboxypeptidase Q O Ser-Met dipeptidase|aminopeptidase|lysosomal dipeptidase|plasma glutamate carboxypeptidase 20121230 -9606 10406 WFDC2 RP3-461P17.2 EDDM4|HE4|WAP5|dJ461P17.6 HGNC:15939|Ensembl:ENSG00000101443|HPRD:11684|Vega:OTTHUMG00000032594 20 20q13.12 WAP four-disulfide core domain 2 protein-coding WFDC2 WAP four-disulfide core domain 2 O WAP domain containing protein HE4-V4|WAP four-disulfide core domain protein 2|epididymal protein 4|epididymal secretory protein E4|epididymis-specific, whey-acidic protein type, four-disulfide core|major epididymis-specific protein E4|putative protease inhibitor WAP5 20121230 -9606 10407 SPAG11B - EDDM2B|EP2|EP2C|EP2D|HE2|HE2C|SPAG11 HGNC:14534|MIM:606560|Ensembl:ENSG00000164871|HPRD:07583|Vega:OTTHUMG00000129219 8 8p23.1 sperm associated antigen 11B protein-coding SPAG11B sperm associated antigen 11B O epididymal protein 2B|human epididymis-specific protein 2|sperm antigen HE2|sperm-associated antigen 11B 20121230 -9606 10408 MYCNOS - MYCN-AS1|NCYM|NYCM HGNC:16911|MIM:605374 2 2p24.1 MYCN opposite strand/antisense RNA miscRNA MYCNOS MYCN opposite strand/antisense RNA O - 20121230 -9606 10409 BASP1 - CAP-23|CAP23|NAP-22|NAP22 HGNC:957|MIM:605940|Ensembl:ENSG00000176788|HPRD:08389|Vega:OTTHUMG00000131061 5 5p15.1 brain abundant, membrane attached signal protein 1 protein-coding BASP1 brain abundant, membrane attached signal protein 1 O 22 kDa neuronal tissue-enriched acidic protein|brain acid soluble protein 1|brain acid-soluble protein 1|neuronal axonal membrane protein NAP-22|neuronal tissue-enriched acidic protein 20121230 -9606 10410 IFITM3 - 1-8U|DSPA2b|IP15 HGNC:5414|MIM:605579|Ensembl:ENSG00000142089|HPRD:05719|Vega:OTTHUMG00000165542 11 11p15.5 interferon induced transmembrane protein 3 protein-coding IFITM3 interferon induced transmembrane protein 3 O dispanin subfamily A member 2b|interferon-induced transmembrane protein 3|interferon-inducible protein 1-8U 20121230 -9606 10411 RAPGEF3 - CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910 HGNC:16629|MIM:606057|Ensembl:ENSG00000079337|HPRD:06928|Vega:OTTHUMG00000133667 12 12q13.1 Rap guanine nucleotide exchange factor (GEF) 3 protein-coding RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3 O 9330170P05Rik|EPAC 1|Rap1 guanine-nucleotide-exchange factor directly activated by cAMP|cAMP-regulated guanine nucleotide exchange factor I|exchange factor directly activated by cAMP 1|exchange protein directly activated by cAMP 1|rap guanine nucleotide exchange factor 3 20121230 -9606 10412 NSA2 HUSSY-29 CDK105|HCL-G1|HCLG1|HUSSY29|TINP1 HGNC:30728|MIM:612497|Ensembl:ENSG00000164346|HPRD:18191|Vega:OTTHUMG00000131273 5 5q13.3 NSA2 ribosome biogenesis homolog (S. cerevisiae) protein-coding NSA2 NSA2 ribosome biogenesis homolog (S. cerevisiae) O TGF beta-inducible nuclear protein 1|TGF-beta inducible nuclear protein|TGF-beta-inducible nuclear protein 1|hairy cell leukemia protein 1|ribosome biogenesis protein NSA2 homolog 20121230 -9606 10413 YAP1 - YAP|YAP2|YAP65|YKI HGNC:16262|MIM:606608|Ensembl:ENSG00000137693|HPRD:09424|Vega:OTTHUMG00000167322 11 11q13 Yes-associated protein 1 protein-coding YAP1 Yes-associated protein 1 O 65 kDa Yes-associated protein|yes-associated protein 2|yes-associated protein beta|yes-associated protein delta|yorkie homolog 20121230 -9606 10415 SNAI1P1 - SNAI1L|SNAI1L1|SNAI1P HGNC:11129 2 2q33-q37 snail homolog 1 (Drosophila) pseudogene 1 pseudo SNAI1P1 snail homolog 1 (Drosophila) pseudogene 1 O - 20121230 -9606 10417 SPON2 UNQ435/PRO866 DIL-1|DIL1|M-SPONDIN|MINDIN HGNC:11253|MIM:605918|Ensembl:ENSG00000159674|HPRD:16174|Vega:OTTHUMG00000089002 4 4p16.3 spondin 2, extracellular matrix protein protein-coding SPON2 spondin 2, extracellular matrix protein O differentially expressed in cancerous and non-cancerous lung cells 1|spondin-2 20121230 -9606 10418 SPON1 - f-spondin HGNC:11252|MIM:604989|HPRD:16087 11 11p15.2 spondin 1, extracellular matrix protein protein-coding SPON1 spondin 1, extracellular matrix protein O VSGP/F-spondin|spondin 1, (f-spondin) extracellular matrix protein|spondin-1|vascular smooth muscle cell growth-promoting factor 20121230 -9606 10419 PRMT5 - HRMT1L5|IBP72|JBP1|SKB1|SKB1Hs HGNC:10894|MIM:604045|Ensembl:ENSG00000100462|HPRD:04955|Vega:OTTHUMG00000028709 14 14q11.2 protein arginine methyltransferase 5 protein-coding PRMT5 protein arginine methyltransferase 5 O 72 kDa ICln-binding protein|HMT1 hnRNP methyltransferase-like 5|SKB1 homolog|histone-arginine N-methyltransferase PRMT5|jak-binding protein 1|protein arginine N-methyltransferase 5|shk1 kinase-binding protein 1 homolog 20121230 -9606 10420 TESK2 - - HGNC:11732|MIM:604746|Ensembl:ENSG00000070759|Vega:OTTHUMG00000007680 1 1p32 testis-specific kinase 2 protein-coding TESK2 testis-specific kinase 2 O dual specificity testis-specific protein kinase 2|testicular protein kinase 2 20121230 -9606 10421 CD2BP2 - FWP010|LIN1|PPP1R59|Snu40|U5-52K HGNC:1656|MIM:604470|Ensembl:ENSG00000169217|HPRD:05127|Vega:OTTHUMG00000132397 16 16p11.2 CD2 (cytoplasmic tail) binding protein 2 protein-coding CD2BP2 CD2 (cytoplasmic tail) binding protein 2 O CD2 antigen (cytoplasmic tail) binding protein 2|CD2 antigen cytoplasmic tail-binding protein 2|CD2 cytoplasmic domain-binding protein 2|U5 snRNP 52K protein|protein phosphatase 1, regulatory subunit 59 20121230 -9606 10422 UBAC1 - GBDR1|RP11-432J22.3|UBADC1 HGNC:30221|MIM:608129|Ensembl:ENSG00000130560|HPRD:12170|Vega:OTTHUMG00000020920 9 9q34.3 UBA domain containing 1 protein-coding UBAC1 UBA domain containing 1 O E3 ubiquitin-protein ligase subunit KPC2|UBA domain-containing protein 1|glialblastoma cell differentiation-related protein 1|kip1 ubiquitination-promoting complex protein 2|putative glialblastoma cell differentiation-related protein|ubiquitin associated domain containing 1|ubiquitin-associated domain-containing protein 1 20121230 -9606 10423 CDIPT - PIS|PIS1 HGNC:1769|MIM:605893|Ensembl:ENSG00000103502|HPRD:12063|Vega:OTTHUMG00000177144 16 16p11.2 CDP-diacylglycerol--inositol 3-phosphatidyltransferase protein-coding CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase O PI synthase|PtdIns synthase|phosphatidylinositol synthase 20121230 -9606 10424 PGRMC2 - DG6|PMBP HGNC:16089|MIM:607735|Ensembl:ENSG00000164040|HPRD:09665|Vega:OTTHUMG00000133342 4 4q26 progesterone receptor membrane component 2 protein-coding PGRMC2 progesterone receptor membrane component 2 O membrane-associated progesterone receptor component 2|progesterone membrane binding protein|steroid receptor protein DG6 20121230 -9606 10425 ARIH2 HT005 ARI2|TRIAD1 HGNC:690|MIM:605615|Ensembl:ENSG00000177479|HPRD:09286|Vega:OTTHUMG00000133547 3 3p21 ariadne homolog 2 (Drosophila) protein-coding ARIH2 ariadne homolog 2 (Drosophila) O ARI-2|E3 ubiquitin-protein ligase ARIH2|all-trans retinoic acid inducible RING finger|protein ariadne-2 homolog 20121230 -9606 10426 TUBGCP3 RP11-480K16.2 GCP3|SPBC98|Spc98p HGNC:18598|Ensembl:ENSG00000126216|HPRD:10289|Vega:OTTHUMG00000017367 13 13q34 tubulin, gamma complex associated protein 3 protein-coding TUBGCP3 tubulin, gamma complex associated protein 3 O GCP-3|gamma-ring complex protein 104 kDa|gamma-tubulin complex component 3|h104p|hGCP3|hGrip104|hSpc98|spindle pole body protein Spc98 homolog 20121230 -9606 10427 SEC24B - SEC24 HGNC:10704|MIM:607184|Ensembl:ENSG00000138802|HPRD:06216|Vega:OTTHUMG00000161372 4 4q25 SEC24 family, member B (S. cerevisiae) protein-coding SEC24B SEC24 family, member B (S. cerevisiae) O SEC24 related gene family, member B|Sec24-related protein B|protein transport protein Sec24B|secretory protein 24 20121230 -9606 10428 CFDP1 - BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 HGNC:1873|MIM:608108|Ensembl:ENSG00000153774|HPRD:16282|Vega:OTTHUMG00000137615 16 16q22.2-q22.3 craniofacial development protein 1 protein-coding CFDP1 craniofacial development protein 1 O centromere protein 29|phosphoprotein (Bucentaur) 20121230 -9606 10430 TMEM147 - NIFIE14 HGNC:30414|MIM:613585|Ensembl:ENSG00000105677|HPRD:17633|Vega:OTTHUMG00000048105 19 19q13.1 transmembrane protein 147 protein-coding TMEM147 transmembrane protein 147 O protein NIFIE 14|seven transmembrane domain protein 20121230 -9606 10432 RBM14 - COAA|PSP2|SIP|SYTIP1|TMEM137 HGNC:14219|MIM:612409|Ensembl:ENSG00000239306|HPRD:11485|Vega:OTTHUMG00000140380 11 11q13.2 RNA binding motif protein 14 protein-coding RBM14 RNA binding motif protein 14 O RNA-binding protein 14|RRM-containing coactivator activator/modulator|SYT-interacting protein|paraspeckle protein 2|synaptotagmin-interacting protein|transmembrane protein 137 20121230 -9606 10434 LYPLA1 - APT-1|LPL1|LYSOPLA|hAPT1 HGNC:6737|MIM:605599|Ensembl:ENSG00000120992|HPRD:07063|Vega:OTTHUMG00000164313 8 8q11.23 lysophospholipase I protein-coding LYPLA1 lysophospholipase I O LPL-I|acyl-protein thioesterase 1|acyl-protein thioesterase-1|lysoPLA I|lysophospholipase 1|lysophospholipid-specific lysophospholipase 20121230 -9606 10435 CDC42EP2 - BORG1|CEP2 HGNC:16263|MIM:606132|Ensembl:ENSG00000149798|HPRD:09363|Vega:OTTHUMG00000165958 11 11q13 CDC42 effector protein (Rho GTPase binding) 2 protein-coding CDC42EP2 CDC42 effector protein (Rho GTPase binding) 2 O CRIB-containing BOGR1 protein|binder of Rho GTPases 1|cdc42 effector protein 2 20121230 -9606 10436 EMG1 - C2F|Grcc2f|NEP1 HGNC:16912|MIM:611531|HPRD:12803 12 12p13.3 EMG1 nucleolar protein homolog (S. cerevisiae) protein-coding EMG1 EMG1 nucleolar protein homolog (S. cerevisiae) O 18S rRNA (pseudouridine-N1-)-methyltransferase NEP1|18S rRNA Psi1248 methyltransferase|essential for mitotic growth 1|ribosomal RNA small subunit methyltransferase NEP1|ribosome biogenesis protein NEP1 20121230 -9606 10437 IFI30 - GILT|IFI-30|IP30 HGNC:5398|MIM:604664|Ensembl:ENSG00000216490|HPRD:05234 19 19p13.1 interferon, gamma-inducible protein 30 protein-coding IFI30 interferon, gamma-inducible protein 30 O gamma-interferon-inducible lysosomal thiol reductase|gamma-interferon-inducible protein IP-30|interferon gamma-inducible protein 30 preproprotein|legumaturain 20121230 -9606 10438 C1D - LRP1|SUN-CoR|SUNCOR|hC1D HGNC:29911|MIM:606997|Ensembl:ENSG00000197223|HPRD:07382|Vega:OTTHUMG00000129564 2 2p13-p12 C1D nuclear receptor corepressor protein-coding C1D C1D nuclear receptor corepressor O C1D DNA-binding protein|C1D nuclear receptor co-repressor|nuclear DNA-binding protein|nuclear nucleic acid-binding protein C1D|small unique nuclear receptor co-repressor|small unique nuclear receptor corepressor 20121230 -9606 10439 OLFM1 RP11-399H11.1 AMY|NOE1|NOELIN1|OlfA HGNC:17187|MIM:605366|Ensembl:ENSG00000130558|HPRD:09249|Vega:OTTHUMG00000020897 9 9q34.3 olfactomedin 1 protein-coding OLFM1 olfactomedin 1 O neuroblastoma protein|neuronal olfactomedin-related ER localized protein|noelin|olfactomedin related ER localized protein|olfactomedin-1|pancortin 1 20121230 -9606 10440 TIMM17A - TIM17|TIM17A HGNC:17315|MIM:605057|Ensembl:ENSG00000134375|HPRD:05449|Vega:OTTHUMG00000035806 1 1q32.1 translocase of inner mitochondrial membrane 17 homolog A (yeast) protein-coding TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) O inner membrane preprotein translocase Tim17a|mitochondrial import inner membrane translocase subunit Tim17-A|mitochondrial inner membrane translocase|preprotein translocase 20121230 -9606 10443 N4BP2L2 RP11-298P3.3 92M18.3|CG005|PFAAP5 HGNC:26916|Ensembl:ENSG00000244754|HPRD:15119|Vega:OTTHUMG00000016700 13 13q13.1 NEDD4 binding protein 2-like 2 protein-coding N4BP2L2 NEDD4 binding protein 2-like 2 O 92M18.3 (novel protein)|CG016|NEDD4-binding protein 2-like 2|phosphonoformate immuno-associated protein 5|protein from BCRA2 region 20121230 -9606 10444 ZER1 - C9orf60|ZYG|ZYG11BL HGNC:30960|Ensembl:ENSG00000160445|HPRD:10802|Vega:OTTHUMG00000020759 9 9q34.11 zyg-11 related, cell cycle regulator protein-coding ZER1 zyg-11 related, cell cycle regulator O ZYG homolog|protein zer-1 homolog|zer-1 homolog|zyg-11 homolog B-like protein 20121230 -9606 10445 MCRS1 - ICP22BP|INO80Q|MCRS2|MSP58|P78 HGNC:6960|MIM:609504|Ensembl:ENSG00000187778|HPRD:11298|Vega:OTTHUMG00000169620 12 12q13.12 microspherule protein 1 protein-coding MCRS1 microspherule protein 1 O 58 kDa microspherule protein|INO80 complex subunit J|INO80 complex subunit Q|cell cycle-regulated factor (78 kDa)|cell cycle-regulated factor p78 20121230 -9606 10446 LRRN2 UNQ256/PRO293 FIGLER7|GAC1|LRANK1|LRRN5 HGNC:16914|MIM:605492|Ensembl:ENSG00000170382|HPRD:16109|Vega:OTTHUMG00000035989 1 1q32.1 leucine rich repeat neuronal 2 protein-coding LRRN2 leucine rich repeat neuronal 2 O fibronectin type III, immunoglobulin and leucine rich repeat domain 7|glioma amplified on chromosome 1 protein|leucine rich and ankyrin repeats 1|leucine rich repeat neuronal 5|leucine-rich repeat neuronal protein 2|leucine-rich repeat neuronal protein 5 20121230 -9606 10447 FAM3C GS3786 ILEI HGNC:18664|MIM:608618|Ensembl:ENSG00000196937|HPRD:12270|Vega:OTTHUMG00000156979 7 7q31 family with sequence similarity 3, member C protein-coding FAM3C family with sequence similarity 3, member C O interleukin-like EMT inducer|predicted osteoblast protein|protein FAM3C 20121230 -9606 10449 ACAA2 - DSAEC HGNC:83|MIM:604770|Ensembl:ENSG00000167315|HPRD:10380|Vega:OTTHUMG00000132667 18 18q21.1 acetyl-CoA acyltransferase 2 protein-coding ACAA2 acetyl-CoA acyltransferase 2 O 3-ketoacyl-CoA thiolase, mitochondrial|T1|acetyl-Coenzyme A acyltransferase 2|beta ketothiolase|beta-ketothiolase|mitochondrial 3-oxoacyl-CoA thiolase|mitochondrial 3-oxoacyl-Coenzyme A thiolase 20121230 -9606 10450 PPIE RP1-118J21.1 CYP-33|CYP33 HGNC:9258|MIM:602435|Ensembl:ENSG00000084072|HPRD:03893|Vega:OTTHUMG00000009248 1 1p32 peptidylprolyl isomerase E (cyclophilin E) protein-coding PPIE peptidylprolyl isomerase E (cyclophilin E) O PPIase E|cyclophilin-33|peptidyl-prolyl cis-trans isomerase E|rotamase E 20121230 -9606 10451 VAV3 - - HGNC:12659|MIM:605541|Ensembl:ENSG00000134215|HPRD:05706|Vega:OTTHUMG00000010995 1 1p13.3 vav 3 guanine nucleotide exchange factor protein-coding VAV3 vav 3 guanine nucleotide exchange factor O VAV-3|guanine nucleotide exchange factor VAV3|vav 3 oncogene 20121230 -9606 10452 TOMM40 - C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40 HGNC:18001|MIM:608061|Ensembl:ENSG00000130204|HPRD:16274|Vega:OTTHUMG00000180842 19 19q13 translocase of outer mitochondrial membrane 40 homolog (yeast) protein-coding TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) O mitochondrial import receptor subunit TOM40 homolog|mitochondrial outer membrane protein|p38.5|protein Haymaker|translocase of outer membrane 40 kDa subunit homolog 20121230 -9606 10454 TAB1 RP3-407F17.2 3'-Tab1|MAP3K7IP1 HGNC:18157|MIM:602615|Ensembl:ENSG00000100324|HPRD:04012|Vega:OTTHUMG00000151102 22 22q13.1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 protein-coding TAB1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 O TAK1-binding protein 1|TGF-beta-activated kinase 1 and MAP3K7-binding protein 1|mitogen-activated protein kinase kinase kinase 7-interacting protein 1|transforming growth factor beta-activated kinase-binding protein 1 20121230 -9606 10455 ECI2 RP5-1013A10.1 ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3 HGNC:14601|MIM:608024|Ensembl:ENSG00000198721|HPRD:16269|Vega:OTTHUMG00000014158 6 6p24.3 enoyl-CoA delta isomerase 2 protein-coding ECI2 enoyl-CoA delta isomerase 2 O D3,D2-enoyl-CoA isomerase|DBI-related protein 1|acyl-Coenzyme A binding domain containing 2|delta(3),delta(2)-enoyl-CoA isomerase|diazepam-binding inhibitor-related protein 1|dodecenoyl-CoA isomerase|enoyl-CoA delta isomerase 2, mitochondrial|hepatocellular carcinoma-associated antigen 88|peroxisomal 3,2-trans-enoyl-CoA isomerase|peroxisomal D3,D2-enoyl-CoA isomerase|renal carcinoma antigen NY-REN-1 20121230 -9606 10456 HAX1 RP11-137P24.1 HCLSBP1|HS1BP1|SCN3 HGNC:16915|MIM:605998|Ensembl:ENSG00000143575|HPRD:12075|Vega:OTTHUMG00000035978 1 1q21.3 HCLS1 associated protein X-1 protein-coding HAX1 HCLS1 associated protein X-1 O HAX-1|HCLS1 (and PKD2) associated protein|HCLS1-associated protein X-1|HS1 binding protein|HS1-associating protein X-1|HS1-binding protein 1|HSP1BP-1 20121230 -9606 10457 GPNMB UNQ1725/PRO9925 HGFIN|NMB HGNC:4462|MIM:604368|Ensembl:ENSG00000136235|HPRD:05081|Vega:OTTHUMG00000022811 7 7p15 glycoprotein (transmembrane) nmb protein-coding GPNMB glycoprotein (transmembrane) nmb O glycoprotein NMB|glycoprotein nmb-like protein|osteoactivin|transmembrane glycoprotein HGFIN|transmembrane glycoprotein NMB 20121230 -9606 10458 BAIAP2 - BAP2|FLAF3|IRSP53 HGNC:947|MIM:605475|Ensembl:ENSG00000175866|HPRD:05686|Vega:OTTHUMG00000177698 17 17q25 BAI1-associated protein 2 protein-coding BAIAP2 BAI1-associated protein 2 O IRS-58|IRSp53/58|brain-specific angiogenesis inhibitor 1-associated protein 2|fas ligand-associated factor 3|insulin receptor substrate p53/p58|insulin receptor substrate protein of 53 kDa 20121230 -9606 10459 MAD2L2 RP3-330O12.4 MAD2B|POLZ2|REV7 HGNC:6764|MIM:604094|Ensembl:ENSG00000116670|HPRD:07246|Vega:OTTHUMG00000002231 1 1p36 MAD2 mitotic arrest deficient-like 2 (yeast) protein-coding MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) O MAD2 (mitotic arrest deficient, yeast, homolog)-like 2|MAD2-like protein 2|REV7 homolog|hREV7|mitotic arrest deficient 2-like protein 2|mitotic arrest deficient homolog-like 2|mitotic spindle assembly checkpoint protein MAD2B|polymerase (DNA-directed), zeta 2, accessory subunit 20121230 -9606 10460 TACC3 - ERIC-1|ERIC1 HGNC:11524|MIM:605303|Ensembl:ENSG00000013810|HPRD:05601|Vega:OTTHUMG00000089535 4 4p16.3 transforming, acidic coiled-coil containing protein 3 protein-coding TACC3 transforming, acidic coiled-coil containing protein 3 O transforming acidic coiled-coil-containing protein 3 20121230 -9606 10461 MERTK - MER|RP38|c-mer HGNC:7027|MIM:604705|Ensembl:ENSG00000153208|HPRD:05269|Vega:OTTHUMG00000131278 2 2q14.1 c-mer proto-oncogene tyrosine kinase protein-coding MERTK c-mer proto-oncogene tyrosine kinase O MER receptor tyrosine kinase|STK kinase|proto-oncogene c-Mer|receptor tyrosine kinase MerTK|tyrosine-protein kinase Mer 20121230 -9606 10462 CLEC10A - CD301|CLECSF13|CLECSF14|HML|HML2|MGL HGNC:16916|MIM:605999|Ensembl:ENSG00000132514|HPRD:12076|Vega:OTTHUMG00000177939 17 17p13.1 C-type lectin domain family 10, member A protein-coding CLEC10A C-type lectin domain family 10, member A O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13 (macrophage-derived)|C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)|C-type lectin domain family 10 member A|macrophage lectin 2 (calcium dependent) 20121230 -9606 10463 SLC30A9 - C4orf1|GAC63|HUEL|ZNT9 HGNC:1329|MIM:604604|Ensembl:ENSG00000014824|HPRD:06858|Vega:OTTHUMG00000099387 4 4p13 solute carrier family 30 (zinc transporter), member 9 protein-coding SLC30A9 solute carrier family 30 (zinc transporter), member 9 O GRIP1-dependent nuclear receptor coactivator|expressed in human embryonic lung|human embryonic lung protein|solute carrier family 30 member 9|zinc transporter 9|znT-9 20121230 -9606 10464 PIBF1 - C13orf24|CEP90|PIBF|RP11-505F3.1 HGNC:23352|MIM:607532|Ensembl:ENSG00000083535|HPRD:06337|Vega:OTTHUMG00000017071 13 13q22.1 progesterone immunomodulatory binding factor 1 protein-coding PIBF1 progesterone immunomodulatory binding factor 1 O progesterone-induced blocking factor 1|progesterone-induced-blocking factor 1 20121230 -9606 10465 PPIH - CYP-20|CYPH|SnuCyp-20|USA-CYP HGNC:14651|MIM:606095|Ensembl:ENSG00000171960|HPRD:12084|Vega:OTTHUMG00000007520 1 1p34.1 peptidylprolyl isomerase H (cyclophilin H) protein-coding PPIH peptidylprolyl isomerase H (cyclophilin H) O PPIase h|U-snRNP-associated cyclophilin SnuCyp-20|U-snRNP-associated cyclophilin SunCyp-20|USA-CyP SnuCyp-20|cyclophilin H|peptidyl-prolyl cis-trans isomerase H|rotamase H|small nuclear ribonucleoprotein particle-specific cyclophilin H 20121230 -9606 10466 COG5 - CDG2I|GOLTC1|GTC90 HGNC:14857|MIM:606821|Ensembl:ENSG00000164597|HPRD:08436|Vega:OTTHUMG00000023895 7 7q31 component of oligomeric golgi complex 5 protein-coding COG5 component of oligomeric golgi complex 5 O 13S golgi transport complex 1 90 kDa subunit|COG complex subunit 5|conserved oligomeric Golgi complex protein 5|conserved oligomeric Golgi complex subunit 5 20121230 -9606 10467 ZNHIT1 - CG1I|ZNFN4A1 HGNC:21688|Ensembl:ENSG00000106400|HPRD:15892|Vega:OTTHUMG00000157113 7 7q22.1 zinc finger, HIT-type containing 1 protein-coding ZNHIT1 zinc finger, HIT-type containing 1 O H_DJ0747G18.14|cyclin-G1-binding protein 1|p18 Hamlet|p18Hamlet|putative cyclin G1 interacting protein|zinc finger HIT domain-containing protein 1|zinc finger protein subfamily 4A member 1|zinc finger protein, subfamily 4A (HIT domain containing), member 1|zinc finger, HIT domain containing 1|zinc finger, HIT type 1 20121230 -9606 10468 FST - FS HGNC:3971|MIM:136470|Ensembl:ENSG00000134363|HPRD:00641|Vega:OTTHUMG00000131183 5 5q11.2 follistatin protein-coding FST follistatin O activin-binding protein|follistatin isoform FST317 20121230 -9606 10469 TIMM44 - TIM44 HGNC:17316|MIM:605058|Ensembl:ENSG00000104980|HPRD:05450 19 19p13.3-p13.2 translocase of inner mitochondrial membrane 44 homolog (yeast) protein-coding TIMM44 translocase of inner mitochondrial membrane 44 homolog (yeast) O mitochondrial import inner membrane translocase subunit TIM44|mitochondrial inner membrane translocase 20121230 -9606 10470 D6S2723E - BING5 - 6 6p21.3 DNA segment on chromosome 6 (unique, pseudogene) 2723 expressed sequence unknown - - - - 20120720 -9606 10471 PFDN6 DADB-159G18.5 H2-KE2|HKE2|KE-2|PFD6 HGNC:4926|MIM:605660|Ensembl:ENSG00000204220|HPRD:16135|Vega:OTTHUMG00000031247 6 6p21.3 prefoldin subunit 6 protein-coding PFDN6 prefoldin subunit 6 O HLA class II region expressed gene KE2|KE2 protein 20121230 -9606 10472 ZNF238 - C2H2-171|RP58|TAZ-1|ZBTB18 HGNC:13030|MIM:608433|Ensembl:ENSG00000179456|HPRD:12231|Vega:OTTHUMG00000040013 1 1q44-qter zinc finger protein 238 protein-coding ZNF238 zinc finger protein 238 O 58 kDa repressor protein|transcriptional repressor RP58|translin-associated zinc finger protein 1|zinc finger and BTB domain-containing protein 18|zinc finger protein C2H2-171 20121230 -9606 10473 HMGN4 - HMG17L3|NHC HGNC:4989|Ensembl:ENSG00000182952|HPRD:17111|Vega:OTTHUMG00000014458 6 6p21.3 high mobility group nucleosomal binding domain 4 protein-coding HMGN4 high mobility group nucleosomal binding domain 4 O high mobility group nucleosome-binding domain-containing protein 4|high mobility group protein N4|high-mobility group (nonhistone chromosomal) protein 17-like 3|high-mobility group protein 17-like 3|non-histone chromosomal protein HMG-17-like 3 20121230 -9606 10474 TADA3 - ADA3|NGG1|TADA3L|hADA3 HGNC:19422|MIM:602945|Ensembl:ENSG00000171148|HPRD:04252|Vega:OTTHUMG00000128440 3 3p25.3 transcriptional adaptor 3 protein-coding TADA3 transcriptional adaptor 3 O ADA3 homolog|ADA3-like protein|STAF54|transcriptional adapter 3 20121230 -9606 10475 TRIM38 - RNF15|RORET HGNC:10059|Ensembl:ENSG00000112343|HPRD:15555|Vega:OTTHUMG00000014414 6 6p21.3 tripartite motif containing 38 protein-coding TRIM38 tripartite motif containing 38 O Ro/SSA ribonucleoprotein homolog|ring finger protein 15|tripartite motif-containing protein 38|zinc finger protein RoRet 20121230 -9606 10476 ATP5H My032 ATPQ HGNC:845|Ensembl:ENSG00000167863|HPRD:16519|Vega:OTTHUMG00000179219 17 17q25 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d protein-coding ATP5H ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d O ATP synthase D chain, mitochondrial|ATP synthase subunit d, mitochondrial|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d|ATP synthase, H+ transporting, mitochondrial F1F0, subunit d|ATPase subunit d|My032 protein 20121230 -9606 10477 UBE2E3 - UBCH9|UbcM2 HGNC:12479|MIM:604151|Ensembl:ENSG00000170035|HPRD:05000 2 2q32.1 ubiquitin-conjugating enzyme E2E 3 protein-coding UBE2E3 ubiquitin-conjugating enzyme E2E 3 O ubiquitin carrier protein E3|ubiquitin-conjugating enzyme E2 E3|ubiquitin-conjugating enzyme E2-23 kDa|ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2E 3 (homologous to yeast UBC4/5)|ubiquitin-protein ligase E3 20121230 -9606 10478 SLC25A17 RP3-362J20.2 PMP34 HGNC:10987|MIM:606795|Ensembl:ENSG00000100372|HPRD:08425|Vega:OTTHUMG00000151139 22 22q13.2 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 protein-coding SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 O 34 kDa peroxisomal membrane protein|peroxisomal membrane protein (34kD)|peroxisomal membrane protein PMP34|solute carrier family 25 member 17 20121230 -9606 10479 SLC9A6 RP11-274K13.1 MRSA|NHE6 HGNC:11079|MIM:300231|Ensembl:ENSG00000198689|HPRD:02208|Vega:OTTHUMG00000022498 X Xq26.3 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 protein-coding SLC9A6 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 O Na(+)/H(+) exchanger 6|sodium/hydrogen exchanger 6|solute carrier family 9 (sodium/hydrogen exchanger), member 6 20121230 -9606 10480 EIF3M GA17 B5|PCID1|TANGO7|hfl-B5 HGNC:24460|MIM:609641|Ensembl:ENSG00000149100|HPRD:09969|Vega:OTTHUMG00000166258 11 11p13 eukaryotic translation initiation factor 3, subunit M protein-coding EIF3M eukaryotic translation initiation factor 3, subunit M O B5 receptor|PCI domain containing 1 (herpesvirus entry mediator)|PCI domain-containing protein 1|dendritic cell protein|eukaryotic translation initiation factor 3 subunit M|fetal lung protein B5|transport and golgi organization 7 homolog 20121230 -9606 10481 HOXB13 - PSGD HGNC:5112|MIM:604607|Ensembl:ENSG00000159184|HPRD:05210|Vega:OTTHUMG00000159900 17 17q21.2 homeobox B13 protein-coding HOXB13 homeobox B13 O homeo box B13|homeobox protein Hox-B13 20121230 -9606 10482 NXF1 - MEX67|TAP HGNC:8071|MIM:602647|Ensembl:ENSG00000162231|HPRD:04035|Vega:OTTHUMG00000167612 11 11q12-q13 nuclear RNA export factor 1 protein-coding NXF1 nuclear RNA export factor 1 O mRNA export factor TAP|tip associating protein|tip-associated protein|tip-associating protein 20121230 -9606 10483 SEC23B RP11-379J5.1 CDA-II|CDAII|CDAN2|HEMPAS HGNC:10702|MIM:610512|Ensembl:ENSG00000101310|HPRD:11543|Vega:OTTHUMG00000031976 20 20p11.23 Sec23 homolog B (S. cerevisiae) protein-coding SEC23B Sec23 homolog B (S. cerevisiae) O SEC23-like protein B|SEC23-related protein B|protein transport protein Sec23B|transport protein SEC23B 20121230 -9606 10484 SEC23A - CLSD HGNC:10701|MIM:610511|Ensembl:ENSG00000100934|HPRD:06714|Vega:OTTHUMG00000028812 14 14q21.1 Sec23 homolog A (S. cerevisiae) protein-coding SEC23A Sec23 homolog A (S. cerevisiae) O SEC23-related protein A|protein transport protein Sec23A 20121230 -9606 10485 C1orf61 RP11-139I14.3 CROC4 HGNC:30780|Ensembl:ENSG00000125462|HPRD:09899|Vega:OTTHUMG00000031022 1 1q22 chromosome 1 open reading frame 61 protein-coding C1orf61 chromosome 1 open reading frame 61 O contingent replication of cDNA 4|contingent replication of cDNA-4|protein CROC-4|transcriptional activator of the c fos promoter|transcriptional activator of the c-fos promoter 20121230 -9606 10486 CAP2 RP11-14H3.2 - HGNC:20039|Ensembl:ENSG00000112186|HPRD:10808|Vega:OTTHUMG00000014311 6 6p22.3 CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding CAP2 CAP, adenylate cyclase-associated protein, 2 (yeast) O 2810452G09Rik|CAP 2|adenylyl cyclase-associated protein 2 20121230 -9606 10487 CAP1 RP11-115D7.1 CAP|CAP1-PEN HGNC:20040|Ensembl:ENSG00000131236|HPRD:09869|Vega:OTTHUMG00000004493 1 1p34.2 CAP, adenylate cyclase-associated protein 1 (yeast) protein-coding CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) O CAP 1|adenylyl cyclase-associated protein 1 20121230 -9606 10488 CREB3 - LUMAN|LZIP HGNC:2347|MIM:606443|Ensembl:ENSG00000107175|Vega:OTTHUMG00000019872 9 9p13.3 cAMP responsive element binding protein 3 protein-coding CREB3 cAMP responsive element binding protein 3 O CREB-3|basic leucine zipper protein|cAMP-responsive element-binding protein 3|cyclic AMP response element (CRE)-binding protein/activating transcription factor 1|cyclic AMP-responsive element-binding protein 3|leucin zipper proitein|transcription factor LZIP-alpha 20121230 -9606 10489 LRRC41 PP7759 MUF1|RP4-636H5.2 HGNC:16917|Ensembl:ENSG00000132128|HPRD:10102|Vega:OTTHUMG00000007810 1 1p34.1 leucine rich repeat containing 41 protein-coding LRRC41 leucine rich repeat containing 41 O MUF1 protein (MUF1)|elongin BC-interacting leucine-rich repeat protein|leucine-rich repeat-containing protein 41|protein Muf1 20121230 -9606 10490 VTI1B - VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 HGNC:17793|MIM:603207|Ensembl:ENSG00000100568|HPRD:04440|Vega:OTTHUMG00000171251 14 14q24.1 vesicle transport through interaction with t-SNAREs 1B protein-coding VTI1B vesicle transport through interaction with t-SNAREs 1B O vesicle transport through interaction with t-SNAREs homolog 1B|vesicle transport v-SNARE protein Vti1-like 1|vesicle-associated soluble NSF attachment protein receptor 20121230 -9606 10491 CRTAP - CASP|LEPREL3|OI7 HGNC:2379|MIM:605497|Ensembl:ENSG00000170275|HPRD:16110|Vega:OTTHUMG00000130746 3 3p22.3 cartilage associated protein protein-coding CRTAP cartilage associated protein O cartilage-associated protein|leprecan-like 3 20121230 -9606 10492 SYNCRIP RP1-3J17.2 GRY-RBP|GRYRBP|HNRPQ1|NSAP1|PP68|hnRNP-Q HGNC:16918|Ensembl:ENSG00000135316|HPRD:06734|Vega:OTTHUMG00000015141 6 6q14-q15 synaptotagmin binding, cytoplasmic RNA interacting protein protein-coding SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein O NS1-associated protein 1|glycine- and tyrosine-rich RNA-binding protein|heterogeneous nuclear ribonucleoprotein Q 20121230 -9606 10493 VAT1 - VATI HGNC:16919|MIM:604631|Ensembl:ENSG00000108828|HPRD:05220|Vega:OTTHUMG00000180816 17 17q21 vesicle amine transport protein 1 homolog (T. californica) protein-coding VAT1 vesicle amine transport protein 1 homolog (T. californica) O membrane protein of cholinergic synaptic vesicles|synaptic vesicle membrane protein VAT-1 homolog 20121230 -9606 10494 STK25 - SOK1|YSK1 HGNC:11404|MIM:602255|Ensembl:ENSG00000115694|HPRD:03770|Vega:OTTHUMG00000133408 2 2q37.3 serine/threonine kinase 25 protein-coding STK25 serine/threonine kinase 25 O Ste20, yeast homolog|serine/threonine-protein kinase 25|ste20-like kinase|ste20/oxidant stress response kinase 1|sterile 20/oxidant stress-response kinase 1 20121230 -9606 10495 ENOX2 RP5-875H3.1 APK1|COVA1|tNOX HGNC:2259|MIM:300282|Ensembl:ENSG00000165675|HPRD:02234|Vega:OTTHUMG00000022401 X Xq25 ecto-NOX disulfide-thiol exchanger 2 protein-coding ENOX2 ecto-NOX disulfide-thiol exchanger 2 O APK1 antigen|cytosolic ovarian carcinoma antigen 1|tumor-associated hydroquinone oxidase 20121230 -9606 10497 UNC13B - MUNC13|UNC13|Unc13h2 HGNC:12566|MIM:605836|Ensembl:ENSG00000198722|HPRD:05785|Vega:OTTHUMG00000019856 9 9p13.3 unc-13 homolog B (C. elegans) protein-coding UNC13B unc-13 homolog B (C. elegans) O homolog of rat Munc13 (diacylglycerol-binding)|munc13-2|protein unc-13 homolog B 20121230 -9606 10498 CARM1 - PRMT4 HGNC:23393|MIM:603934|Ensembl:ENSG00000142453|HPRD:09158|Vega:OTTHUMG00000180699 19 19p13.2 coactivator-associated arginine methyltransferase 1 protein-coding CARM1 coactivator-associated arginine methyltransferase 1 O histone-arginine methyltransferase CARM1|protein arginine N-methyltransferase 4 20121230 -9606 10499 NCOA2 - GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 HGNC:7669|MIM:601993|Ensembl:ENSG00000140396|HPRD:09066|Vega:OTTHUMG00000164671 8 8q13.3 nuclear receptor coactivator 2 protein-coding NCOA2 nuclear receptor coactivator 2 O class E basic helix-loop-helix protein 75|glucocorticoid receptor-interacting protein-1|hTIF2|transcriptional intermediary factor 2 20121230 -9606 10500 SEMA6C RP11-68I18.3 SEMAY|m-SemaY|m-SemaY2 HGNC:10740|MIM:609294|Ensembl:ENSG00000143434|HPRD:10220|Vega:OTTHUMG00000012261 1 1q21.2 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C protein-coding SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C O sema Y|semaphorin-6C|semaphorin-Y 20121230 -9606 10501 SEMA6B UNQ1907/PRO4353 SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ HGNC:10739|MIM:608873|Ensembl:ENSG00000167680|HPRD:12322|Vega:OTTHUMG00000182011 19 19p13.3 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B protein-coding SEMA6B sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B O semaphorin VIB|semaphorin Z|semaphorin-6B|semaphorin-6Ba 20121230 -9606 10505 SEMA4F - M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M HGNC:10734|MIM:603706|Ensembl:ENSG00000135622|HPRD:04748|Vega:OTTHUMG00000129952 2 2p13.1 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F protein-coding SEMA4F sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F O semaphorin M|semaphorin-4F|semaphorin-M|semaphorin-W 20121230 -9606 10507 SEMA4D XXyac-YM68G7.1 C9orf164|CD100|M-sema-G|SEMAJ|coll-4 HGNC:10732|MIM:601866|Ensembl:ENSG00000187764|HPRD:03520|Vega:OTTHUMG00000020185 9 9q22.2 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D protein-coding SEMA4D sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D O A8|BB18|GR3|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, 4D|semaphorin-4D 20121230 -9606 10509 SEMA4B UNQ749/PRO1480 SEMAC|SemC HGNC:10730|Ensembl:ENSG00000185033|HPRD:10217|Vega:OTTHUMG00000172096 15 15q25 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B protein-coding SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B O sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, 4B|semaphorin-4B 20121230 -9606 10512 SEMA3C - SEMAE|SemE HGNC:10725|MIM:602645|Ensembl:ENSG00000075223|HPRD:04034|Vega:OTTHUMG00000023447 7 7q21-q31 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C O sema E|semaphorin E|semaphorin-3C|semaphorin-E 20121230 -9606 10513 APPBP2 - HS.84084|PAT1 HGNC:622|MIM:605324|Ensembl:ENSG00000062725|HPRD:05616|Vega:OTTHUMG00000180048 17 17q23.2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 protein-coding APPBP2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 O APP-BP2|amyloid beta precursor protein-binding protein 2|amyloid protein-binding protein 2|protein interacting with APP tail 1 20121230 -9606 10514 MYBBP1A - P160|PAP2 HGNC:7546|MIM:604885|Ensembl:ENSG00000132382|HPRD:05349|Vega:OTTHUMG00000090747 17 17p13.3 MYB binding protein (P160) 1a protein-coding MYBBP1A MYB binding protein (P160) 1a O myb-binding protein 1A|p53-activated protein-2 20121230 -9606 10516 FBLN5 UNQ184/PRO210 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|UP50 HGNC:3602|MIM:604580|Ensembl:ENSG00000140092|HPRD:05204|Vega:OTTHUMG00000171122 14 14q32.1 fibulin 5 protein-coding FBLN5 fibulin 5 O developmental arteries and neural crest EGF-like protein|fibulin-5|urine p50 protein 20121230 -9606 10517 FBXW10 - Fbw10|HREP|SM25H2|SM2SH2 HGNC:1211|MIM:611679|Ensembl:ENSG00000171931|HPRD:06851|Vega:OTTHUMG00000059048 17 17p12 F-box and WD repeat domain containing 10 protein-coding FBXW10 F-box and WD repeat domain containing 10 O F-box and WD-40 domain protein 10|F-box/WD repeat-containing protein 10|ubiquitin ligase specificity factor 20121230 -9606 10518 CIB2 - DFNB48|KIP2|USH1J HGNC:24579|MIM:605564|Ensembl:ENSG00000136425|HPRD:05713|Vega:OTTHUMG00000143731 15 15q24 calcium and integrin binding family member 2 protein-coding CIB2 calcium and integrin binding family member 2 O 2810434I23Rik|DNA-dependent protein kinase catalytic subunit-interacting protein 2|KIP 2|Usher syndrome 1J (autosomal recessive)|calcium and integrin-binding family member 2 20121230 -9606 10519 CIB1 - CIB|KIP|KIP1|SIP2-28 HGNC:16920|MIM:602293|Ensembl:ENSG00000185043|HPRD:03800|Vega:OTTHUMG00000149808 15 15q25.3-q26 calcium and integrin binding 1 (calmyrin) protein-coding CIB1 calcium and integrin binding 1 (calmyrin) O CIBP|DNA-PKcs-interacting protein|DNA-dependent protein kinase interacting protein|SNK-interacting protein 2-28|Snk interacting protein 2-28|calcium and integrin binding protein 1|calcium and integrin binding, protein kinase interacting protein|calcium and integrin-binding protein 1|calcium- and integrin-binding protein|calmyrin|kinase-interacting protein 20121230 -9606 10520 ZNF211 - C2H2-25|CH2H2-25|ZNF-25|ZNFC25 HGNC:13003|MIM:601856|Ensembl:ENSG00000121417|HPRD:03512|Vega:OTTHUMG00000168012 19 19q13.4 zinc finger protein 211 protein-coding ZNF211 zinc finger protein 211 O zinc finger protein C2H2-25 20121230 -9606 10521 DDX17 RP3-434P1.1 P72|RH70 HGNC:2740|MIM:608469|Ensembl:ENSG00000100201|HPRD:10532|Vega:OTTHUMG00000151136 22 22q13.1 DEAD (Asp-Glu-Ala-Asp) box helicase 17 protein-coding DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 O DEAD (Asp-Glu-Ala-Asp) box polypeptide 17|DEAD box protein p72|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD)|RNA-dependent helicase p72|probable ATP-dependent RNA helicase DDX17 20121230 -9606 10522 DEAF1 - NUDR|SPN|ZMYND5 HGNC:14677|MIM:602635|Ensembl:ENSG00000177030|HPRD:04027|Vega:OTTHUMG00000165363 11 11p15.5 deformed epidermal autoregulatory factor 1 (Drosophila) protein-coding DEAF1 deformed epidermal autoregulatory factor 1 (Drosophila) O deformed epidermal autoregulatory factor 1 homolog|nuclear DEAF-1-related transcriptional regulator|suppressin|zinc finger MYND domain-containing protein 5 20121230 -9606 10523 CHERP - DAN16|SCAF6|SRA1 HGNC:16930|Ensembl:ENSG00000085872|Vega:OTTHUMG00000169304 19 19p13.1 calcium homeostasis endoplasmic reticulum protein protein-coding CHERP calcium homeostasis endoplasmic reticulum protein O ERPROT 213-21|ERPROT213-21|SR-related CTD associated factor 6|SR-related CTD-associated factor 6|protein with polyglutamine repeat 20121230 -9606 10524 KAT5 - ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|cPLA2 HGNC:5275|MIM:601409|Ensembl:ENSG00000172977|HPRD:03245|Vega:OTTHUMG00000166617 11 11q13 K(lysine) acetyltransferase 5 protein-coding KAT5 K(lysine) acetyltransferase 5 O 60 kDa Tat-interactive protein|HIV-1 Tat interactive protein, 60kDa|K-acetyltransferase 5|Tat interacting protein, 60kDa|cPLA(2)-interacting protein|cPLA2 interacting protein|histone acetyltransferase HTATIP|histone acetyltransferase KAT5 20121230 -9606 10525 HYOU1 - GRP-170|Grp170|HSP12A|ORP-150|ORP150 HGNC:16931|MIM:601746|Ensembl:ENSG00000149428|HPRD:03448|Vega:OTTHUMG00000166354 11 11q23.1-q23.3 hypoxia up-regulated 1 protein-coding HYOU1 hypoxia up-regulated 1 O 150 kDa oxygen-regulated protein|170 kDa glucose-regulated protein|glucose-regulated protein 170|hypoxia up-regulated protein 1|oxygen regulated protein (150kD) 20121230 -9606 10526 IPO8 - RANBP8 HGNC:9853|MIM:605600|Ensembl:ENSG00000133704|HPRD:09282|Vega:OTTHUMG00000169172 12 12p11.21 importin 8 protein-coding IPO8 importin 8 O RAN binding protein 8|imp8|importin-8|ran-binding protein 8 20121230 -9606 10527 IPO7 - Imp7|RANBP7 HGNC:9852|MIM:605586|Ensembl:ENSG00000205339|HPRD:09280|Vega:OTTHUMG00000165753 11 11p15.4 importin 7 protein-coding IPO7 importin 7 O RAN-binding protein 7|importin-7 20121230 -9606 10528 NOP56 RP4-686C3.1 NOL5A|SCA36 HGNC:15911|MIM:614154|Ensembl:ENSG00000101361|HPRD:10119|Vega:OTTHUMG00000031703 20 20p13 NOP56 ribonucleoprotein protein-coding NOP56 NOP56 ribonucleoprotein O NOP56 ribonucleoprotein homolog|nucleolar protein 56|nucleolar protein 5A (56kDa with KKE/D repeat) 20121230 -9606 10529 NEBL RP11-56H7.1 LASP2|LNEBL HGNC:16932|MIM:605491|Ensembl:ENSG00000078114|HPRD:10403|Vega:OTTHUMG00000017788 10 10p12 nebulette protein-coding NEBL nebulette O LIM-nebulette|actin-binding Z-disk protein 20121230 -9606 10531 PITRM1 RP11-298E9.1 MP1|PreP HGNC:17663|Ensembl:ENSG00000107959|HPRD:07142|Vega:OTTHUMG00000017557 10 10p15.2 pitrilysin metallopeptidase 1 protein-coding PITRM1 pitrilysin metallopeptidase 1 O PreP peptidasome|metalloprotease 1 (pitrilysin family)|pitrilysin metalloproteinase 1|presequence protease, mitochondrial 20121230 -9606 10533 ATG7 - APG7-LIKE|APG7L|GSA7 HGNC:16935|MIM:608760|Ensembl:ENSG00000197548|HPRD:12293|Vega:OTTHUMG00000129740 3 3p25.3 autophagy related 7 protein-coding ATG7 autophagy related 7 O ATG12-activating enzyme E1 ATG7|ATG7 autophagy related 7 homolog|autophagy-related protein 7|hAGP7|ubiquitin activating enzyme E1-like protein|ubiquitin-activating enzyme E1-like protein|ubiquitin-like modifier-activating enzyme ATG7 20121230 -9606 10534 SSSCA1 - p27 HGNC:11328|MIM:606044|Ensembl:ENSG00000173465|HPRD:06921|Vega:OTTHUMG00000166388 11 11q13.1 Sjogren syndrome/scleroderma autoantigen 1 protein-coding SSSCA1 Sjogren syndrome/scleroderma autoantigen 1 O Sjoegren syndrome/scleroderma autoantigen 1|Sjogren's syndrome/scleroderma autoantigen 1|autoantigen p27|centromeric autoantigen (27kD) 20121230 -9606 10535 RNASEH2A - AGS4|JUNB|RNASEHI|RNHIA|RNHL HGNC:18518|MIM:606034|Ensembl:ENSG00000104889|HPRD:06914|Vega:OTTHUMG00000180481 19 19p13.2 ribonuclease H2, subunit A protein-coding RNASEH2A ribonuclease H2, subunit A O RNase H(35)|RNase H2 subunit A|RNase HI large subunit|aicardi-Goutieres syndrome 4 protein|ribonuclease H2 subunit A|ribonuclease H2, large subunit|ribonuclease HI large subunit|ribonuclease HI subunit A|ribonuclease HI, large subunit 20121230 -9606 10536 LEPREL2 - GRCB|HSU47926|P3H3 HGNC:19318|MIM:610342|Ensembl:ENSG00000110811|HPRD:10039|Vega:OTTHUMG00000168516 12 12q13 leprecan-like 2 protein-coding LEPREL2 leprecan-like 2 O B protein|gene rich cluster, B|leprecan-like 2 protein|leprecan-like protein 2|prolyl 3-hydroxylase 3|protein B 20121230 -9606 10537 UBD DADB-115L1.4 FAT10|GABBR1|UBD-3 HGNC:18795|MIM:606050|Ensembl:ENSG00000213886|HPRD:09354|Vega:OTTHUMG00000031289 6 6p21.3 ubiquitin D protein-coding UBD ubiquitin D O diubiquitin|ubiquitin-like protein FAT10 20121230 -9606 10538 BATF - B-ATF|BATF1|SFA-2|SFA2 HGNC:958|MIM:612476|Ensembl:ENSG00000156127|HPRD:09820|Vega:OTTHUMG00000171486 14 14q24.3 basic leucine zipper transcription factor, ATF-like protein-coding BATF basic leucine zipper transcription factor, ATF-like O B-cell-activating transcription factor|SF-HT-activated gene 2 protein|activating transcription factor B|basic leucine zipper transcriptional factor ATF-like 20121230 -9606 10539 GLRX3 HUSSY-22 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 HGNC:15987|MIM:612754|Ensembl:ENSG00000108010|HPRD:10153|Vega:OTTHUMG00000019267 10 10q26 glutaredoxin 3 protein-coding GLRX3 glutaredoxin 3 O PKC-interacting cousin of thioredoxin|PKC-theta-interacting protein|PKCq-interacting protein|glutaredoxin 4|glutaredoxin-3|thioredoxin-like protein 2 20121230 -9606 10540 DCTN2 - DCTN50|DYNAMITIN|RBP50 HGNC:2712|MIM:607376|Ensembl:ENSG00000175203|HPRD:09568|Vega:OTTHUMG00000170124 12 12q13.3 dynactin 2 (p50) protein-coding DCTN2 dynactin 2 (p50) O 50 kD dynein-associated polypeptide|50 kDa dynein-associated polypeptide|dynactin complex 50 kD subunit|dynactin complex 50 kDa subunit|dynactin subunit 2|p50 dynamitin 20121230 -9606 10541 ANP32B RP11-535C21.1 APRIL|PHAPI2|SSP29 HGNC:16677|Ensembl:ENSG00000136938|HPRD:09803|Vega:OTTHUMG00000020338 9 9q22.32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B protein-coding ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B O acidic leucine-rich nuclear phosphoprotein 32 family member B|acidic protein rich in leucines|putative HLA-DR-associated protein I-2|silver-stainable protein SSP29 20121230 -9606 10542 LAMTOR5 - HBXIP|XIP HGNC:17955|MIM:608521|Ensembl:ENSG00000134248|HPRD:09773|Vega:OTTHUMG00000011568 1 1p13.3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding LAMTOR5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 O HBV X-interacting protein|HBx-interacting protein|hepatitis B virus x interacting protein|hepatitis B virus x-interacting protein (9.6kD)|late endosomal/lysosomal adaptor and MAPK and MTOR activator 5|ragulator complex protein LAMTOR5 20121230 -9606 10544 PROCR - CCCA|CCD41|CD201|EPCR HGNC:9452|MIM:600646|Ensembl:ENSG00000101000|HPRD:02801|Vega:OTTHUMG00000032323 20 20q11.2 protein C receptor, endothelial protein-coding PROCR protein C receptor, endothelial O APC receptor|CD201 antigen|activated protein C receptor|cell cycle, centrosome-associated protein|centrocyclin|endothelial cell protein C receptor|endothelial protein C receptor 20121230 -9606 10547 PSORS4 - - HGNC:17275|MIM:603935 1 1q21 psoriasis susceptibility 4 unknown PSORS4 psoriasis susceptibility 4 O - 20120826 -9606 10548 TM9SF1 - HMP70|MP70 HGNC:11864|Ensembl:ENSG00000100926|HPRD:09987|Vega:OTTHUMG00000029322 14 14q11.2 transmembrane 9 superfamily member 1 protein-coding TM9SF1 transmembrane 9 superfamily member 1 O MP70 protein family member|multispanning membrane protein (70kD)|transmembrane protein 9 superfamily member 1 20121230 -9606 10549 PRDX4 - AOE37-2|PRX-4 HGNC:17169|MIM:606506|Ensembl:ENSG00000123131|HPRD:05935|Vega:OTTHUMG00000021253 X Xp22.11 peroxiredoxin 4 protein-coding PRDX4 peroxiredoxin 4 O antioxidant enzyme AOE372|peroxiredoxin IV|peroxiredoxin-4|prx-IV|thioredoxin peroxidase (antioxidant enzyme)|thioredoxin peroxidase AO372|thioredoxin-dependent peroxide reductase A0372 20121230 -9606 10550 ARL6IP5 HSPC127 DERP11|GTRAP3-18|JWA|PRAF3|addicsin|hp22|jmx HGNC:16937|MIM:605709|Ensembl:ENSG00000144746|HPRD:09303|Vega:OTTHUMG00000158773 3 3p14 ADP-ribosylation-like factor 6 interacting protein 5 protein-coding ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5 O ADP-ribosylation factor-like protein 6-interacting protein 5|ARL-6-interacting protein 5|JM5|PRA1 domain family 3|PRA1 family protein 3|aip-5|cytoskeleton related vitamin A responsive protein|cytoskeleton-related vitamin A-responsive protein|dermal papilla derived protein 11|dermal papilla-derived protein 11|glutamate transporter EAAC1-interacting protein|glutamate transporter EEAC1-associated protein|prenylated Rab acceptor protein 2|protein JWa|putative MAPK activating protein PM27|putative MAPK-activating protein PM27 20121230 -9606 10551 AGR2 UNQ515/PRO1030 AG2|GOB-4|HAG-2|PDIA17|XAG-2 HGNC:328|MIM:606358|Ensembl:ENSG00000106541|HPRD:05896|Vega:OTTHUMG00000023446 7 7p21.3 anterior gradient 2 homolog (Xenopus laevis) protein-coding AGR2 anterior gradient 2 homolog (Xenopus laevis) O AG-2|HPC8|anterior gradient homolog 2|anterior gradient protein 2 homolog|protein disulfide isomerase family A, member 17|secreted cement gland homolog|secreted cement gland protein XAG-2 homolog 20121230 -9606 10552 ARPC1A - Arc40|SOP2Hs|SOP2L HGNC:703|MIM:604220|Ensembl:ENSG00000241685|HPRD:07252|Vega:OTTHUMG00000154553 7 7q22.1 actin related protein 2/3 complex, subunit 1A, 41kDa protein-coding ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa O SOP2-like protein|actin binding protein (Schizosaccharomyces pombe sop2-like)|actin-related protein 2/3 complex subunit 1A 20121230 -9606 10553 HTATIP2 - CC3|SDR44U1|TIP30 HGNC:16637|MIM:605628|Ensembl:ENSG00000109854|HPRD:09288|Vega:OTTHUMG00000166015 11 11p15.1 HIV-1 Tat interactive protein 2, 30kDa protein-coding HTATIP2 HIV-1 Tat interactive protein 2, 30kDa O 30 kDa HIV-1 TAT-interacting protein|HIV-1 TAT-interactive protein 2|Tat-interacting protein (30kD)|oxidoreductase HTATIP2|short chain dehydrogenase/reductase family 44U, member 1 20121230 -9606 10554 AGPAT1 DAAP-218M18.8 1-AGPAT1|G15|LPAAT-alpha|LPAATA HGNC:324|MIM:603099|Ensembl:ENSG00000204310|HPRD:04372|Vega:OTTHUMG00000031210 6 6p21.3 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) protein-coding AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) O 1-AGP acyltransferase 1|1-AGPAT 1|1-acyl-sn-glycerol-3-phosphate acyltransferase alpha|1-acylglycerol-3-phosphate O-acyltransferase 1 (acetoacetly Coenzyme A thiolase)|lysophosphatidic acid acyltransferase alpha|lysophospholipid acyltransferase 20121230 -9606 10555 AGPAT2 - 1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta HGNC:325|MIM:603100|Ensembl:ENSG00000169692|HPRD:04373|Vega:OTTHUMG00000020936 9 9q34.3 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) protein-coding AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) O 1-AGP acyltransferase 2|1-AGPAT 2|1-acyl-sn-glycerol-3-phosphate acyltransferase beta|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase-beta)|lysophosphatidic acid acyltransferase beta|lysophosphatidic acid acyltransferase-beta 20121230 -9606 10556 RPP30 RP11-320F15.1 TSG15 HGNC:17688|MIM:606115|Ensembl:ENSG00000148688|HPRD:09359|Vega:OTTHUMG00000018733 10 10q23.31 ribonuclease P/MRP 30kDa subunit protein-coding RPP30 ribonuclease P/MRP 30kDa subunit O RNase P subunit 2|RNaseP protein p30|ribonuclease P protein subunit p30 20121230 -9606 10557 RPP38 RP11-455B2.5 - HGNC:30329|MIM:606116|Ensembl:ENSG00000152464|HPRD:09360|Vega:OTTHUMG00000017728 10 10p13 ribonuclease P/MRP 38kDa subunit protein-coding RPP38 ribonuclease P/MRP 38kDa subunit O RNaseP protein p38|ribonuclease P protein subunit p38 20121230 -9606 10558 SPTLC1 RP11-118F2.1 HSAN|HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI|hLCB1 HGNC:11277|MIM:605712|Ensembl:ENSG00000090054|HPRD:05754|Vega:OTTHUMG00000021047 9 9q22.2 serine palmitoyltransferase, long chain base subunit 1 protein-coding SPTLC1 serine palmitoyltransferase, long chain base subunit 1 O LCB 1|SPT 1|long chain base biosynthesis protein 1|serine C-palmitoyltransferase|serine palmitoyltransferase 1|serine-palmitoyl-CoA transferase 1 20121230 -9606 10559 SLC35A1 - CDG2F|CMPST|CST|hCST HGNC:11021|MIM:605634|Ensembl:ENSG00000164414|HPRD:09290|Vega:OTTHUMG00000015177 6 6q15 solute carrier family 35 (CMP-sialic acid transporter), member A1 protein-coding SLC35A1 solute carrier family 35 (CMP-sialic acid transporter), member A1 O CMP-SA-Tr|CMP-Sia-Tr|CMP-sialic acid transporter|mutated CMP-sialic acid transporter A1|solute carrier family 35 (CMP-sialic acid transporter), member 1|solute carrier family 35 (UDP-galactose transporter), member 1|solute carrier family 35 member A1 20121230 -9606 10560 SLC19A2 RP1-206D15.4 TC1|THMD1|THT1|THTR1|TRMA HGNC:10938|MIM:603941|Ensembl:ENSG00000117479|HPRD:04897|Vega:OTTHUMG00000035452 1 1q23.3 solute carrier family 19 (thiamine transporter), member 2 protein-coding SLC19A2 solute carrier family 19 (thiamine transporter), member 2 O high affinity thiamine transporter|reduced folate carrier protein (RFC) like|solute carrier family 19 member 2|thTr-1|thiamine transporter 1 20121230 -9606 10561 IFI44 - MTAP44|p44 HGNC:16938|MIM:610468|Ensembl:ENSG00000137965|HPRD:09998|Vega:OTTHUMG00000009723 1 1p31.1 interferon-induced protein 44 protein-coding IFI44 interferon-induced protein 44 O interferon-induced, hepatitis C-associated microtubular aggregate protein (44kD)|microtubule-associated protein 44 20121230 -9606 10562 OLFM4 UNQ362/PRO698 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD HGNC:17190|MIM:614061|Ensembl:ENSG00000102837|HPRD:06580|Vega:OTTHUMG00000016981 13 13q14.3 olfactomedin 4 protein-coding OLFM4 olfactomedin 4 O G-CSF-stimulated clone 1 protein|antiapoptotic protein GW112|olfactomedin-4 20121230 -9606 10563 CXCL13 - ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 HGNC:10639|MIM:605149|Ensembl:ENSG00000156234|HPRD:05513|Vega:OTTHUMG00000130201 4 4q21 chemokine (C-X-C motif) ligand 13 protein-coding CXCL13 chemokine (C-X-C motif) ligand 13 O B-cell chemoattractant|B-cell-attracting chemokine 1|B-cell-homing chemokine (ligand for Burkitt's lymphoma receptor-1)|B-lymphocyte chemoattractant|C-X-C motif chemokine 13|CXC chemokine BLC|b cell-attracting chemokine 1|b lymphocyte chemoattractant|chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant)|small inducible cytokine B subfamily (Cys-X-Cys motif), member 13 (B-cell chemoattractant)|small-inducible cytokine B13 20121230 -9606 10564 ARFGEF2 - BIG2|PVNH2|dJ1164I10.1 HGNC:15853|MIM:605371|Ensembl:ENSG00000124198|HPRD:09250|Vega:OTTHUMG00000032687 20 20q13.13 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) protein-coding ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) O brefeldin A-inhibited GEP 2|brefeldin A-inhibited guanine nucleotide-exchange protein 2 20121230 -9606 10565 ARFGEF1 - ARFGEP1|BIG1|P200 HGNC:15772|MIM:604141|Ensembl:ENSG00000066777|HPRD:09163|Vega:OTTHUMG00000164626 8 8q13 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) protein-coding ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) O brefeldin A-inhibited guanine nucleotide-exchange protein 1|p200 ARF guanine nucleotide exchange factor 20121230 -9606 10566 AKAP3 - AKAP110|CT82|FSP95|PRKA3|SOB1 HGNC:373|MIM:604689|Ensembl:ENSG00000111254|HPRD:05256|Vega:OTTHUMG00000168226 12 12p13.3 A kinase (PRKA) anchor protein 3 protein-coding AKAP3 A kinase (PRKA) anchor protein 3 O A-kinase anchor protein 110 kDa|A-kinase anchor protein 3|A-kinase anchor protein, 110kDa|AKAP 110|AKAP-3|Fibrous Sheath Protein of 95 kDa|cancer/testis antigen 82|fibrous sheath protein, 95kDa|fibrousheathin 1|fibrousheathin I|fibrousheathin-1|protein kinase A anchoring protein 3|protein kinase A-anchoring protein 3|sperm oocyte-binding protein 1 20121230 -9606 10567 RABAC1 - PRA1|PRAF1|YIP3 HGNC:9794|MIM:604925|Ensembl:ENSG00000105404|HPRD:05375 19 19q13.2 Rab acceptor 1 (prenylated) protein-coding RABAC1 Rab acceptor 1 (prenylated) O PRA1 domain family 1|PRA1 family protein 1|prenylated Rab acceptor 1|prenylated Rab acceptor protein 1 20121230 -9606 10568 SLC34A2 - NAPI-3B|NAPI-IIb|NPTIIb HGNC:11020|MIM:604217|Ensembl:ENSG00000157765|HPRD:07251|Vega:OTTHUMG00000097757 4 4p15.2 solute carrier family 34 (sodium phosphate), member 2 protein-coding SLC34A2 solute carrier family 34 (sodium phosphate), member 2 O sodium-dependent phosphate transport protein 2B|sodium/phosphate cotransporter 2B|type II sodium-dependent phosphate transporter 3b 20121230 -9606 10569 SLU7 - 9G8|hSlu7 HGNC:16939|MIM:605974|Ensembl:ENSG00000164609|HPRD:12074|Vega:OTTHUMG00000130324 5 5q33.3 SLU7 splicing factor homolog (S. cerevisiae) protein-coding SLU7 SLU7 splicing factor homolog (S. cerevisiae) O pre-mRNA-splicing factor SLU7|splicing factor|step II splicing factor SLU7|zinc knuckle motif containing 20121230 -9606 10570 DPYSL4 RP11-140A10.4 CRMP3|DRP-4|ULIP4 HGNC:3016|MIM:608407|Ensembl:ENSG00000151640|HPRD:07463|Vega:OTTHUMG00000019283 10 10q26 dihydropyrimidinase-like 4 protein-coding DPYSL4 dihydropyrimidinase-like 4 O CRMP-3|ULIP-4|UNC33-like phosphoprotein 4|collapsin response mediator protein 3|dihydropyrimidinase-related protein 4 20121230 -9606 10572 SIVA1 - CD27BP|SIVA|Siva-1|Siva-2 HGNC:17712|MIM:605567|Ensembl:ENSG00000184990|HPRD:16124|Vega:OTTHUMG00000170819 14 14q32.33 SIVA1, apoptosis-inducing factor protein-coding SIVA1 SIVA1, apoptosis-inducing factor O CD27-binding (Siva) protein|apoptosis regulatory protein Siva 20121230 -9606 10573 MRPL28 Z97634.1-001 MAAT1|p15 HGNC:14484|MIM:604853|Ensembl:ENSG00000086504|Vega:OTTHUMG00000047994 16 16p13.3 mitochondrial ribosomal protein L28 protein-coding MRPL28 mitochondrial ribosomal protein L28 O 39S ribosomal protein L28, mitochondrial|L28mt|MRP-L28|melanoma antigen p15|melanoma-associated antigen recognised by cytotoxic T lymphocytes|melanoma-associated antigen recognized by T lymphocytes|melanoma-associated antigen recognized by T-lymphocytes 20121230 -9606 10574 CCT7 - CCTETA|CCTH|NIP7-1|TCP1ETA HGNC:1622|MIM:605140|Ensembl:ENSG00000135624|HPRD:06896|Vega:OTTHUMG00000152765 2 2p13.2 chaperonin containing TCP1, subunit 7 (eta) protein-coding CCT7 chaperonin containing TCP1, subunit 7 (eta) O CCT-eta|HIV-1 Nef interacting protein|HIV-1 Nef-interacting protein|T-complex protein 1 subunit eta|TCP-1-eta|chaperonin containing t-complex polypeptide 1, eta subunit 20121230 -9606 10575 CCT4 - CCT-DELTA|Cctd|SRB HGNC:1617|MIM:605142|Ensembl:ENSG00000115484|HPRD:05506|Vega:OTTHUMG00000152166 2 2p15 chaperonin containing TCP1, subunit 4 (delta) protein-coding CCT4 chaperonin containing TCP1, subunit 4 (delta) O T-complex protein 1 subunit delta|TCP-1-delta|chaperonin containing t-complex polypeptide 1, delta subunit|stimulator of TAR RNA-binding 20121230 -9606 10576 CCT2 - 99D8.1|CCT-beta|CCTB|PRO1633|TCP-1-beta HGNC:1615|MIM:605139|Ensembl:ENSG00000166226|HPRD:06895|Vega:OTTHUMG00000169383 12 12q15 chaperonin containing TCP1, subunit 2 (beta) protein-coding CCT2 chaperonin containing TCP1, subunit 2 (beta) O T-complex protein 1 subunit beta|T-complex protein 1, beta subunit|chaperonin containing t-complex polypeptide 1, beta subunit|chaperonin containing t-complex polypeptide 1, subunit 2 20121230 -9606 10577 NPC2 - EDDM1|HE1 HGNC:14537|MIM:601015|Ensembl:ENSG00000119655|HPRD:03008|Vega:OTTHUMG00000171212 14 14q24.3 Niemann-Pick disease, type C2 protein-coding NPC2 Niemann-Pick disease, type C2 O epididymal protein 1|epididymal secretory protein E1|human epididymis-specific protein 1|niemann-Pick disease type C2 protein|tissue-specific secretory protein 20121230 -9606 10578 GNLY - 519|D2S69E|LAG-2|LAG2|NKG5|TLA519 HGNC:4414|MIM:188855|Ensembl:ENSG00000115523|HPRD:01788|Vega:OTTHUMG00000130179 2 2p11.2 granulysin protein-coding GNLY granulysin O T-cell activation protein 519|T-lymphocyte activation gene 519|lymphocyte-activation gene 2|lymphokine LAG-2 20121230 -9606 10579 TACC2 RP11-296H2.1 AZU-1|ECTACC HGNC:11523|MIM:605302|Ensembl:ENSG00000138162|HPRD:05600|Vega:OTTHUMG00000019181 10 10q26 transforming, acidic coiled-coil containing protein 2 protein-coding TACC2 transforming, acidic coiled-coil containing protein 2 O anti zuai-1|transforming acidic coiled-coil-containing protein 2 20121230 -9606 10580 SORBS1 RP11-476E15.1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 HGNC:14565|MIM:605264|Ensembl:ENSG00000095637|HPRD:05587|Vega:OTTHUMG00000018812 10 10q23.33 sorbin and SH3 domain containing 1 protein-coding SORBS1 sorbin and SH3 domain containing 1 O Fas-ligand associated factor 2|SH3 domain protein 5|SH3-domain protein 5 (ponsin)|c-Cbl associated protein|c-Cbl-associated protein|ponsin|sorbin and SH3 domain-containing protein 1 20121230 -9606 10581 IFITM2 - 1-8D|DSPA2c HGNC:5413|MIM:605578|Ensembl:ENSG00000185201|HPRD:05718|Vega:OTTHUMG00000165357 11 11p15.5 interferon induced transmembrane protein 2 protein-coding IFITM2 interferon induced transmembrane protein 2 O dispanin subfamily A member 2c|interferon-induced transmembrane protein 2|interferon-inducible protein 1-8D 20121230 -9606 10584 COLEC10 UNQ366/PRO702 CLL1 HGNC:2220|MIM:607620|Ensembl:ENSG00000184374|HPRD:07403|Vega:OTTHUMG00000164971 8 8q23-q24.1 collectin sub-family member 10 (C-type lectin) protein-coding COLEC10 collectin sub-family member 10 (C-type lectin) O CL-34|collectin 34|collectin liver 1|collectin liver protein 1|collectin-10|collectin-34 20121230 -9606 10585 POMT1 RP11-334J6.2 LGMD2K|MDDGA1|MDDGB1|MDDGC1|RT HGNC:9202|MIM:607423|Ensembl:ENSG00000130714|HPRD:06305|Vega:OTTHUMG00000020826 9 9q34.1 protein-O-mannosyltransferase 1 protein-coding POMT1 protein-O-mannosyltransferase 1 O dolichyl-phosphate-mannose--protein mannosyltransferase 1|protein O-mannosyl-transferase 1 20121230 -9606 10586 MAB21L2 - - HGNC:6758|MIM:604357|Ensembl:ENSG00000181541|HPRD:05075|Vega:OTTHUMG00000161442 4 4q31 mab-21-like 2 (C. elegans) protein-coding MAB21L2 mab-21-like 2 (C. elegans) O protein mab-21-like 2 20121230 -9606 10587 TXNRD2 - SELZ|TR|TR-BETA|TR3|TRXR2 HGNC:18155|MIM:606448|Ensembl:ENSG00000184470|HPRD:05921|HPRD:18519|Vega:OTTHUMG00000149975 22 22q11.21 thioredoxin reductase 2 protein-coding TXNRD2 thioredoxin reductase 2 O selenoprotein Z|thioredoxin reductase 2, mitochondrial|thioredoxin reductase 3|thioredoxin reductase TR3|thioredoxin reductase beta 20121230 -9606 10588 MTHFS - HsT19268 HGNC:7437|MIM:604197|Ensembl:ENSG00000136371|HPRD:09174|Vega:OTTHUMG00000144174 15 15q25.1 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) protein-coding MTHFS 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) O 5-formyltetrahydrofolate cyclo-ligase|methenyl-THF synthetase 20121230 -9606 10589 DRAP1 - NC2-alpha HGNC:3019|MIM:602289|Ensembl:ENSG00000175550|HPRD:03796|Vega:OTTHUMG00000166723 11 11q13.3 DR1-associated protein 1 (negative cofactor 2 alpha) protein-coding DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) O dr1-associated corepressor|negative co-factor 2-alpha|negative cofactor 2 alpha 20121230 -9606 10590 SCGN - CALBL|DJ501N12.8|SECRET|SEGN|setagin HGNC:16941|MIM:609202|Ensembl:ENSG00000079689|HPRD:10211|Vega:OTTHUMG00000014409 6 6p22.3-p22.1 secretagogin, EF-hand calcium binding protein protein-coding SCGN secretagogin, EF-hand calcium binding protein O secretagogin 20121230 -9606 10591 DNPH1 - C6orf108|RCL|RP3-330M21.3|dJ330M21.3 HGNC:21218|Ensembl:ENSG00000112667|HPRD:06707|Vega:OTTHUMG00000014724 6 6p21.1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 O c-Myc-responsive protein Rcl|deoxyribonucleoside 5'-monophosphate N-glycosidase|putative c-Myc-responsive 20121230 -9606 10592 SMC2 PRO0324 CAP-E|CAPE|SMC-2|SMC2L1 HGNC:14011|MIM:605576|Ensembl:ENSG00000136824|HPRD:09277|Vega:OTTHUMG00000020401 9 9q31.1 structural maintenance of chromosomes 2 protein-coding SMC2 structural maintenance of chromosomes 2 O SMC protein 2|SMC2 (structural maintenance of chromosomes 2, yeast)-like 1|XCAP-E homolog|chromosome-associated protein E|structural maintenance of chromosomes (SMC) family member, chromosome-associated protein E|structural maintenance of chromosomes protein 2 20121230 -9606 10594 PRPF8 - HPRP8|PRP8|PRPC8|RP13 HGNC:17340|MIM:607300|Ensembl:ENSG00000174231|HPRD:06295|Vega:OTTHUMG00000090553 17 17p13.3 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) protein-coding PRPF8 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) O 220 kDa U5 snRNP-specific protein|PRP8 homolog|U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p|apoptosis-regulated protein 1|apoptosis-regulated protein 2|p220|pre-mRNA-processing-splicing factor 8|precursor mRNA processing protein|splicing factor Prp8 20121230 -9606 10595 ERN2 - IRE1-BETA|IRE1b HGNC:16942|MIM:604034|Ensembl:ENSG00000134398|HPRD:04944|Vega:OTTHUMG00000177020 16 16p12.2 endoplasmic reticulum to nucleus signaling 2 protein-coding ERN2 endoplasmic reticulum to nucleus signaling 2 O ER to nucleus signalling 2|IRE1 beta|IRE1, S. cerevisiae, homolog of|endoplasmic reticulum to nucleus signalling 2|endoplasmic reticulum-to-nucleus signaling 2|hIRE2p|inositol-requiring 1 beta|inositol-requiring protein 2|serine/threonine-protein kinase/endoribonuclease IRE2 20121230 -9606 10597 TRAPPC2P1 - MIP-2A|SEDLP|SEDLP1 HGNC:10710 19 19q13.4 trafficking protein particle complex 2 pseudogene 1 pseudo TRAPPC2P1 trafficking protein particle complex 2 pseudogene 1 O - 20121230 -9606 10598 AHSA1 HSPC322 AHA1|C14orf3|p38 HGNC:1189|MIM:608466|Ensembl:ENSG00000100591|HPRD:09768|Vega:OTTHUMG00000171539 14 14q24 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) protein-coding AHSA1 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) O activator of 90 kDa heat shock protein ATPase homolog 1 20121230 -9606 10599 SLCO1B1 - HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 HGNC:10959|MIM:604843|Ensembl:ENSG00000134538|HPRD:09214|Vega:OTTHUMG00000169047 12 12p solute carrier organic anion transporter family, member 1B1 protein-coding SLCO1B1 solute carrier organic anion transporter family, member 1B1 O OATP-2|liver-specific organic anion transporter 1|sodium-independent organic anion-transporting polypeptide 2|solute carrier family 21 (organic anion transporter), member 6|solute carrier family 21 member 6|solute carrier organic anion transporter family member 1B1 20121230 -9606 10600 USP16 MSTP039 UBP-M HGNC:12614|MIM:604735|Ensembl:ENSG00000156256|HPRD:06881|Vega:OTTHUMG00000078802 21 21q22.11 ubiquitin specific peptidase 16 protein-coding USP16 ubiquitin specific peptidase 16 O deubiquitinating enzyme 16|ubiquitin carboxyl-terminal hydrolase 16|ubiquitin specific protease 16|ubiquitin thioesterase 16|ubiquitin thiolesterase 16|ubiquitin-processing protease UBP-M|ubiquitin-specific processing protease 16|ubiquitin-specific-processing protease 16 20121230 -9606 10602 CDC42EP3 - BORG2|CEP3|UB1 HGNC:16943|MIM:606133|Ensembl:ENSG00000163171|HPRD:09364|Vega:OTTHUMG00000100971 2 2p21 CDC42 effector protein (Rho GTPase binding) 3 protein-coding CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3 O CRIB-containing BORG2 protein|MSE55-related Cdc42-binding protein|MSE55-related protein|binder of Rho GTPases 2|cdc42 effector protein 3 20121230 -9606 10603 SH2B2 - APS HGNC:17381|MIM:605300|HPRD:16097 7 7q22 SH2B adaptor protein 2 protein-coding SH2B2 SH2B adaptor protein 2 O SH2 and PH domain-containing adapter protein APS|SH2B adapter protein 2|adapter protein with pleckstrin homology and Src homology 2 domains|adaptor protein with pleckstrin homology and src homology 2 domains 20121230 -9606 10605 PAIP1 - - HGNC:16945|MIM:605184|Ensembl:ENSG00000172239|HPRD:05539|Vega:OTTHUMG00000096960 5 5p12 poly(A) binding protein interacting protein 1 protein-coding PAIP1 poly(A) binding protein interacting protein 1 O PABC1-interacting protein 1|PABP-interacting protein 1|PAIP-1|poly(A)-binding protein-interacting protein 1|polyadenylate binding protein-interacting protein 1|polyadenylate-binding protein-interacting protein 1 20121230 -9606 10606 PAICS - ADE2|ADE2H1|AIRC|PAIS HGNC:8587|MIM:172439|Ensembl:ENSG00000128050|HPRD:01401|Vega:OTTHUMG00000160957 4 4q12 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase protein-coding PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase O AIR carboxylase|SAICAR synthetase|multifunctional protein ADE2|multifunctional protein ADE2H1 20121230 -9606 10607 TBL3 - SAZD|UTP13 HGNC:11587|MIM:605915|Ensembl:ENSG00000183751|HPRD:09327|Vega:OTTHUMG00000128710 16 16p13.3 transducin (beta)-like 3 protein-coding TBL3 transducin (beta)-like 3 O WD repeat-containing protein SAZD|WD-repeat protein SAZD|transducin beta-like protein 3 20121230 -9606 10608 MXD4 RP11-478C1.1 MAD4|MST149|MSTP149|bHLHc12 HGNC:13906|Ensembl:ENSG00000123933|HPRD:10103|Vega:OTTHUMG00000090243 4 4p16.3 MAX dimerization protein 4 protein-coding MXD4 MAX dimerization protein 4 O Mad4 homolog|class C basic helix-loop-helix protein 12|max dimerization protein 4|max dimerizer 4|max-associated protein 4|max-interacting transcriptional repressor MAD4 20121230 -9606 10609 LEPREL4 - NO55|NOL55|SC65 HGNC:16946|Ensembl:ENSG00000141696|HPRD:10126|Vega:OTTHUMG00000133501 17 17q21.2 leprecan-like 4 protein-coding LEPREL4 leprecan-like 4 O leprecan-like protein 4|nucleolar autoantigen (55kD)|nucleolar autoantigen No55|nucleolar autoantigen, 55kDa|synaptonemal complex protein SC65 20121230 -9606 10610 ST6GALNAC2 - SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM HGNC:10867|MIM:610137|Ensembl:ENSG00000070731|HPRD:10231|Vega:OTTHUMG00000180301 17 17q25.1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 O (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide B|(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase|SIAT7-B|ST6GalNAc II|ST6GalNAcII|alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2|galNAc alpha-2,6-sialyltransferase II|sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide B|sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) B|sialyltransferase 7B|sialyltransferase-like 1 20121230 -9606 10611 PDLIM5 L9 ENH|ENH1|LIM HGNC:17468|MIM:605904|Ensembl:ENSG00000163110|HPRD:05799|Vega:OTTHUMG00000130973 4 4q22 PDZ and LIM domain 5 protein-coding PDLIM5 PDZ and LIM domain 5 O PDZ and LIM domain protein 5|enigma homolog|enigma-like LIM domain protein|enigma-like PDZ and LIM domains protein 20121230 -9606 10612 TRIM3 - BERP|HAC1|RNF22|RNF97 HGNC:10064|MIM:605493|Ensembl:ENSG00000110171|Vega:OTTHUMG00000133405 11 11p15.5 tripartite motif containing 3 protein-coding TRIM3 tripartite motif containing 3 O RING finger protein 97|brain expressed ring finger|brain-expressed RING finger protein|ring finger protein 22|tripartite motif protein TRIM3|tripartite motif-containing 3|tripartite motif-containing protein 3 20121230 -9606 10613 ERLIN1 RP11-316M21.1 C10orf69|Erlin-1|KE04|KEO4|SPFH1 HGNC:16947|MIM:611604|Ensembl:ENSG00000107566|HPRD:08502|Vega:OTTHUMG00000018900 10 10q21-q22 ER lipid raft associated 1 protein-coding ERLIN1 ER lipid raft associated 1 O Band_7 23-211 Keo4 (Interim) similar to C.elegans protein C42C1.9|SPFH domain family, member 1|SPFH domain-containing protein 1|endoplasmic reticulum lipid raft-associated protein 1|erlin-1|stomatin-prohibitin-flotillin-HflC/K domain-containing protein 1 20121230 -9606 10614 HEXIM1 - CLP1|EDG1|HIS1|MAQ1 HGNC:24953|MIM:607328|Ensembl:ENSG00000186834|HPRD:09544|Vega:OTTHUMG00000180112 17 17q21.31 hexamethylene bis-acetamide inducible 1 protein-coding HEXIM1 hexamethylene bis-acetamide inducible 1 O HMBA-inducible|cardiac lineage protein 1|estrogen down-regulated gene 1 protein|hexamethylene bis-acetamide-inducible protein 1|hexamethylene bisacetamide-inducible protein|hexamethylene-bis-acetamide-inducible transcript 1|hexamthylene bis-acetamide inducible 1|menage a quatre 1|menage a quatre protein 1|protein HEXIM1 20121230 -9606 10615 SPAG5 - DEEPEST|MAP126|hMAP126 HGNC:13452|Ensembl:ENSG00000076382|HPRD:10246|Vega:OTTHUMG00000166586 17 17q11.2 sperm associated antigen 5 protein-coding SPAG5 sperm associated antigen 5 O astrin|mitotic spindle associated protein p126|mitotic spindle coiled-coil related protein|mitotic spindle-associated protein p126|sperm-associated antigen 5 20121230 -9606 10616 RBCK1 RP5-852M4.4 C20orf18|HOIL-1|HOIL1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 HGNC:15864|MIM:610924|Ensembl:ENSG00000125826|HPRD:16643|Vega:OTTHUMG00000031634 20 20p13 RanBP-type and C3HC4-type zinc finger containing 1 protein-coding RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 O HBV associated factor 4|HBV-associated factor 4|RBCC protein interacting with PKC1|RING finger protein 54|heme-oxidized IRP2 ubiquitin ligase 1|hepatitis B virus X-associated protein 4|ranBP-type and C3HC4-type zinc finger-containing protein 1|ubiquitin conjugating enzyme 7 interacting protein 3|ubiquitin-conjugating enzyme 7-interacting protein 3 20121230 -9606 10617 STAMBP - AMSH HGNC:16950|MIM:606247|Ensembl:ENSG00000124356|HPRD:05877|Vega:OTTHUMG00000129817 2 2p13.1 STAM binding protein protein-coding STAMBP STAM binding protein O STAM-binding protein|associated molecule with the SH3 domain of STAM|endosome-associated ubiquitin isopeptidase 20121230 -9606 10618 TGOLN2 - TGN38|TGN46|TGN48|TGN51|TTGN2 HGNC:15450|MIM:603062|Ensembl:ENSG00000152291|HPRD:04343|Vega:OTTHUMG00000153017 2 2p11.2 trans-golgi network protein 2 protein-coding TGOLN2 trans-golgi network protein 2 O TGN38 homolog|trans-Golgi network integral membrane protein 2|trans-Golgi network protein (46, 48, 51kD isoforms)|trans-Golgi network protein TGN51 20121230 -9606 10620 ARID3B - BDP|DRIL2 HGNC:14350|MIM:612457|Ensembl:ENSG00000179361|HPRD:09806|Vega:OTTHUMG00000141321 15 15q24 AT rich interactive domain 3B (BRIGHT-like) protein-coding ARID3B AT rich interactive domain 3B (BRIGHT-like) O ARID domain-containing protein 3B|AT rich interactive domain 3B (BRIGHT- like)|AT-rich interactive domain-containing protein 3B|bright and dead ringer protein|bright-like protein 20121230 -9606 10621 POLR3F - RPC39|RPC6 HGNC:15763|Ensembl:ENSG00000132664|HPRD:15156|Vega:OTTHUMG00000031971 20 20p11.23 polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa protein-coding POLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa O DNA-directed RNA polymerase III 39 kDa polypeptide|DNA-directed RNA polymerase III subunit F|DNA-directed RNA polymerase III subunit RPC6|DNA-directed RNA polymerases III 39 kDa polypeptide|RNA polymerase III 39 kDa subunit|RNA polymerase III C39 subunit|RNA polymerase III subunit C6 20121230 -9606 10622 POLR3G - RPC32|RPC7 HGNC:30075|Ensembl:ENSG00000113356|HPRD:17881|Vega:OTTHUMG00000162809 5 5q14.3 polymerase (RNA) III (DNA directed) polypeptide G (32kD) protein-coding POLR3G polymerase (RNA) III (DNA directed) polypeptide G (32kD) O DNA-directed RNA polymerase III 32 kDa polypeptide|DNA-directed RNA polymerase III subunit G|DNA-directed RNA polymerase III subunit RPC7|RNA polymerase III 32 kDa subunit|RNA polymerase III subunit C7 20121230 -9606 10623 POLR3C - RPC3|RPC62 HGNC:30076|Ensembl:ENSG00000186141|HPRD:17880|Vega:OTTHUMG00000013753 1 1q21.1 polymerase (RNA) III (DNA directed) polypeptide C (62kD) protein-coding POLR3C polymerase (RNA) III (DNA directed) polypeptide C (62kD) O DNA-directed III 62 kDa polypeptide|DNA-directed RNA polymerase III subunit C|DNA-directed RNA polymerase III subunit RPC3|RNA polymerase III 62 kDa subunit|RNA polymerase III subunit C3 20121230 -9606 10625 IVNS1ABP RP4-635A23.5 FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP HGNC:16951|MIM:609209|Ensembl:ENSG00000116679|HPRD:10004|Vega:OTTHUMG00000035384 1 1q25.1-q31.1 influenza virus NS1A binding protein protein-coding IVNS1ABP influenza virus NS1A binding protein O NCX downstream gene 1|NS1-binding protein|aryl hydrocarbon receptor-associated 3|aryl hydrocarbon receptor-associated protein 3|influenza virus NS1A-binding protein 20121230 -9606 10626 TRIM16 - EBBP HGNC:17241|MIM:609505|Ensembl:ENSG00000221926|HPRD:15552|Vega:OTTHUMG00000059067 17 17p11.2 tripartite motif containing 16 protein-coding TRIM16 tripartite motif containing 16 O estrogen-responsive B box protein|tripartite motif-containing 16|tripartite motif-containing protein 16 20121230 -9606 10627 MYL12A - MLCB|MRCL3|MRLC3|MYL2B HGNC:16701|Ensembl:ENSG00000101608|HPRD:14735|Vega:OTTHUMG00000131509 18 18p11.31 myosin, light chain 12A, regulatory, non-sarcomeric protein-coding MYL12A myosin, light chain 12A, regulatory, non-sarcomeric O MLC-2B|myosin RLC|myosin regulatory light chain 12A|myosin regulatory light chain 2, nonsarcomeric|myosin regulatory light chain 3|myosin regulatory light chain MRCL3|myosin regulatory light chain MRLC3|myosin, light polypeptide, regulatory, non-sarcomeric (20kD) 20121230 -9606 10628 TXNIP RP11-315I20.4 EST01027|HHCPA78|THIF|VDUP1 HGNC:16952|MIM:606599|Ensembl:ENSG00000117289|HPRD:05964|Vega:OTTHUMG00000013755 1 1q21.1 thioredoxin interacting protein protein-coding TXNIP thioredoxin interacting protein O thioredoxin binding protein 2|thioredoxin-binding protein 2|thioredoxin-interacting protein|upregulated by 1,25-dihydroxyvitamin D-3|vitamin D3 up-regulated protein 1 20121230 -9606 10629 TAF6L - PAF65A HGNC:17305|MIM:602946|Ensembl:ENSG00000162227|HPRD:04253|Vega:OTTHUMG00000167610 11 11q12.3 TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa protein-coding TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa O PAF65-alpha|PCAF-associated factor 65 alpha|PCAF-associated factor 65-alpha|TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L|p300/CBP-associated factor (PCAF)-associated factor 65 20121230 -9606 10630 PDPN CTA-520D8.1 AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2 HGNC:29602|MIM:608863|Ensembl:ENSG00000162493|HPRD:16398|Vega:OTTHUMG00000007912 1 1p36.21 podoplanin protein-coding PDPN podoplanin O PA2.26 antigen|T1-alpha|glycoprotein 36|glycoprotein, 36-KD|hT1alpha-1|hT1alpha-2|lung type I cell membrane associated glycoprotein|lung type-I cell membrane-associated glycoprotein (T1A-2) 20121230 -9606 10631 POSTN - OSF-2|OSF2|PDLPOSTN|PN|RP11-412K4.1|periostin HGNC:16953|MIM:608777|Ensembl:ENSG00000133110|HPRD:12295|Vega:OTTHUMG00000016751 13 13q13.3 periostin, osteoblast specific factor protein-coding POSTN periostin, osteoblast specific factor O osteoblast specific factor 2 (fasciclin I-like)|osteoblast-specific factor 2|periodontal ligament-specific periostin|periostin|periostin isoform thy2|periostin isoform thy4|periostin isoform thy6|periostin isoform thy8 20121230 -9606 10632 ATP5L - ATP5JG HGNC:14247|Ensembl:ENSG00000167283|HPRD:09815|Vega:OTTHUMG00000166336 11 11q23.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G protein-coding ATP5L ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G O ATP synthase g chain, mitochondrial|ATP synthase subunit g, mitochondrial|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G|ATP synthase, H+ transporting, mitochondrial F1F0, subunit g|ATPase subunit G|F1F0-type ATP synthase subunit g|F1Fo-ATP synthase complex Fo membrane domain g subunit 20121230 -9606 10633 RASL10A - RRP22 HGNC:16954|MIM:602220|Ensembl:ENSG00000100276|HPRD:03744|Vega:OTTHUMG00000151106 22 22q12.2 RAS-like, family 10, member A protein-coding RASL10A RAS-like, family 10, member A O ras-like protein RRP22|ras-like protein family member 10A|ras-related protein on chromosome 22 20121230 -9606 10634 GAS2L1 - GAR22 HGNC:16955|MIM:602128|Ensembl:ENSG00000185340|HPRD:03676|Vega:OTTHUMG00000151108 22 22q12.2 growth arrest-specific 2 like 1 protein-coding GAS2L1 growth arrest-specific 2 like 1 O GAS2-like protein 1|GAS2-related protein on chromosome 22|growth arrest-specific protein 2-like 1 20121230 -9606 10635 RAD51AP1 - PIR51 HGNC:16956|MIM:603070|Ensembl:ENSG00000111247|Vega:OTTHUMG00000168125 12 12p13.2-p13.1 RAD51 associated protein 1 protein-coding RAD51AP1 RAD51 associated protein 1 O RAD51-associated protein 1|RAD51-interacting protein 20121230 -9606 10636 RGS14 - - HGNC:9996|MIM:602513|Ensembl:ENSG00000169220|HPRD:03944|Vega:OTTHUMG00000163324 5 5q35.3 regulator of G-protein signaling 14 protein-coding RGS14 regulator of G-protein signaling 14 O regulator of G-protein signalling 14 20121230 -9606 10637 LEFTY1 UNQ278/PRO317 LEFTB|LEFTYB HGNC:6552|MIM:603037|Ensembl:ENSG00000243709|HPRD:09116|Vega:OTTHUMG00000037443 1 1q42.1 left-right determination factor 1 protein-coding LEFTY1 left-right determination factor 1 O left-right determination factor B|left-right determination, factor B|protein lefty-1|protein lefty-B 20121230 -9606 10638 SPHAR - RP4-803J11.4 HGNC:16957|Ensembl:ENSG00000213029|HPRD:11597|Vega:OTTHUMG00000058947 1 1q42.13 S-phase response (cyclin related) protein-coding SPHAR S-phase response (cyclin related) O S-phase response (cyclin-related)|S-phase response protein|protein SPHAR 20121230 -9606 10639 HHCM - hhc(M) HPRD:17101 8 8q24.3 Mahlavu hepatocellular carcinoma other - - - - 20120511 -9606 10640 EXOC5 - HSEC10|PRO1912|SEC10|SEC10L1|SEC10P HGNC:10696|MIM:604469|Ensembl:ENSG00000070367|HPRD:07258|Vega:OTTHUMG00000171309 14 14q22.3 exocyst complex component 5 protein-coding EXOC5 exocyst complex component 5 O SEC10-like 1|exocyst complex component Sec10 20121230 -9606 10641 NPRL2 - NPR2|NPR2L|TUSC4 HGNC:24969|MIM:607072|Ensembl:ENSG00000114388|HPRD:06147|Vega:OTTHUMG00000156864 3 3p21.3 nitrogen permease regulator-like 2 (S. cerevisiae) protein-coding NPRL2 nitrogen permease regulator-like 2 (S. cerevisiae) O 2810446G01Rik|G21 protein|NPR2-like protein|gene 21 protein|homologous to yeast nitrogen permease (candidate tumor suppressor)|nitrogen permease regulator 2-like protein|tumor suppressor candidate 4 20121230 -9606 10642 IGF2BP1 - CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 HGNC:28866|MIM:608288|Ensembl:ENSG00000159217|HPRD:09752|Vega:OTTHUMG00000161173 17 17q21.32 insulin-like growth factor 2 mRNA binding protein 1 protein-coding IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1 O IGF-II mRNA-binding protein 1|IGF2 mRNA-binding protein 1|VICKZ family member 1|ZBP-1|coding region determinant-binding protein|insulin-like growth factor 2 mRNA-binding protein 1|zipcode-binding protein 1 20121230 -9606 10643 IGF2BP3 - CT98|IMP-3|IMP3|KOC1|VICKZ3 HGNC:28868|MIM:608259|Ensembl:ENSG00000136231|HPRD:16306|Vega:OTTHUMG00000128445 7 7p11 insulin-like growth factor 2 mRNA binding protein 3 protein-coding IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 O IGF II mRNA binding protein 3|IGF-II mRNA-binding protein 3|IGF2 mRNA-binding protein 3|KH domain containing protein overexpressed in cancer|KH domain-containing protein overexpressed in cancer|VICKZ family member 3|cancer/testis antigen 98|hKOC|insulin-like growth factor 2 mRNA-binding protein 3 20121230 -9606 10644 IGF2BP2 - IMP-2|IMP2|VICKZ2|p62 HGNC:28867|MIM:608289|Ensembl:ENSG00000073792|HPRD:10507|Vega:OTTHUMG00000074025 3 3q27.2 insulin-like growth factor 2 mRNA binding protein 2 protein-coding IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 O IGF-II mRNA-binding protein 2|IGF2 mRNA-binding protein 2|VICKZ family member 2|hepatocellular carcinoma autoantigen p62|insulin-like growth factor 2 mRNA-binding protein 2 20121230 -9606 10645 CAMKK2 - CAMKK|CAMKKB HGNC:1470|MIM:615002|Ensembl:ENSG00000110931|HPRD:06467|Vega:OTTHUMG00000169156 12 12q24.2 calcium/calmodulin-dependent protein kinase kinase 2, beta protein-coding CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta O CAMKK beta protein|caM-KK 2|caM-KK beta|caM-kinase kinase 2|caM-kinase kinase beta|calcium/calmodulin-dependent protein kinase beta|calcium/calmodulin-dependent protein kinase kinase 2 20121230 -9606 10647 SCGB1D2 - LIPB|LPHB HGNC:18396|Ensembl:ENSG00000124935|HPRD:18026|Vega:OTTHUMG00000167508 11 11q13 secretoglobin, family 1D, member 2 protein-coding SCGB1D2 secretoglobin, family 1D, member 2 O lipophilin-B|prostatein-like lipophilin B|secretoglobin family 1D member 2 20121230 -9606 10648 SCGB1D1 - LIPA|LPHA HGNC:18395|Ensembl:ENSG00000168515|HPRD:18025|Vega:OTTHUMG00000167505 11 11q13 secretoglobin, family 1D, member 1 protein-coding SCGB1D1 secretoglobin, family 1D, member 1 O lipophilin A (uteroglobin family member)|lipophilin-A|prostatein-like lipophilin A|secretoglobin family 1D member 1 20121230 -9606 10650 SLMO1 - C18orf43|HFL-EDDG1|PRELID3A HGNC:24639|Ensembl:ENSG00000141391|HPRD:09981|Vega:OTTHUMG00000131694 18 18p11.21 slowmo homolog 1 (Drosophila) protein-coding SLMO1 slowmo homolog 1 (Drosophila) O erythroid differentiation and denucleation factor 1|protein slowmo homolog 1 20121230 -9606 10651 MTX2 - - HGNC:7506|MIM:608555|Ensembl:ENSG00000128654|HPRD:09777|Vega:OTTHUMG00000132514 2 2q31.1 metaxin 2 protein-coding MTX2 metaxin 2 O metaxin-2|mitochondrial outer membrane import complex protein 2 20121230 -9606 10652 YKT6 - - HGNC:16959|MIM:606209|Ensembl:ENSG00000106636|HPRD:16205|Vega:OTTHUMG00000129089 7 7p15.1 YKT6 v-SNARE homolog (S. cerevisiae) protein-coding YKT6 YKT6 v-SNARE homolog (S. cerevisiae) O R-SNARE|SNARE protein Ykt6|YKT6 v-SNARE protein|YKT6, S. cerevisiae, homolog of|synaptobrevin homolog YKT6 20121230 -9606 10653 SPINT2 - DIAR3|HAI-2|HAI2|Kop|PB HGNC:11247|MIM:605124|Ensembl:ENSG00000167642|HPRD:05495|Vega:OTTHUMG00000181891 19 19q13.1 serine peptidase inhibitor, Kunitz type, 2 protein-coding SPINT2 serine peptidase inhibitor, Kunitz type, 2 O hepatocyte growth factor activator inhibitor type 2|kunitz-type protease inhibitor 2|placental bikunin|serine protease inhibitor, Kunitz type, 2 20121230 -9606 10654 PMVK RP11-307C12.5 HUMPMKI|PMK|PMKA|PMKASE HGNC:9141|MIM:607622|Ensembl:ENSG00000163344|HPRD:07404|Vega:OTTHUMG00000037415 1 1q22 phosphomevalonate kinase protein-coding PMVK phosphomevalonate kinase O hPMK 20121230 -9606 10655 DMRT2 - - HGNC:2935|MIM:604935|Ensembl:ENSG00000173253|HPRD:16079|Vega:OTTHUMG00000019437 9 9p24.3 doublesex and mab-3 related transcription factor 2 protein-coding DMRT2 doublesex and mab-3 related transcription factor 2 O DSXL-2|doublesex- and mab-3-related transcription factor 2|doublesex-like 2 protein|terra-like protein 20121230 -9606 10656 KHDRBS3 - Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile HGNC:18117|MIM:610421|Ensembl:ENSG00000131773|HPRD:10007|Vega:OTTHUMG00000164164 8 8q24.2 KH domain containing, RNA binding, signal transduction associated 3 protein-coding KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 O KH domain-containing, RNA-binding, signal transduction-associated protein 3|RNA-binding protein T-Star|Sam68-like phosphotyrosine protein, T-STAR|sam68-like mammalian protein 2 20121230 -9606 10657 KHDRBS1 - Sam68|p62|p68 HGNC:18116|MIM:602489|Ensembl:ENSG00000121774|HPRD:03926|Vega:OTTHUMG00000003921 1 1p32 KH domain containing, RNA binding, signal transduction associated 1 protein-coding KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 O GAP-associated tyrosine phosphoprotein p62 (Sam68)|KH domain-containing, RNA-binding, signal transduction-associated protein 1|p21 Ras GTPase-activating protein-associated p62|src-associated in mitosis 68 kDa protein 20121230 -9606 10658 CELF1 - BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 HGNC:2549|MIM:601074|Ensembl:ENSG00000149187|HPRD:03046|Vega:OTTHUMG00000166526 11 11p11 CUGBP, Elav-like family member 1 protein-coding CELF1 CUGBP, Elav-like family member 1 O 50 kDa nuclear polyadenylated RNA-binding protein|CELF-1|CUG RNA-binding protein|CUG triplet repeat RNA-binding protein 1|CUG triplet repeat, RNA binding protein 1|CUG triplet repeat, RNA-binding protein 1|CUG-BP- and ETR-3-like factor 1|CUG-BP1|CUGBP Elav-like family member 1|EDEN-BP homolog|RNA-binding protein BRUNOL-2|bruno-like 2|bruno-like protein 2|deadenylation factor CUG-BP|embryo deadenylation element binding protein|embryo deadenylation element-binding protein homolog|nuclear polyadenylated RNA-binding protein, 50-kD 20121230 -9606 10659 CELF2 RP11-544P1.2 BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR HGNC:2550|MIM:602538|Ensembl:ENSG00000048740|HPRD:03964|Vega:OTTHUMG00000017668 10 10p13 CUGBP, Elav-like family member 2 protein-coding CELF2 CUGBP, Elav-like family member 2 O CELF-2|CUG triplet repeat RNA-binding protein 2|CUG triplet repeat, RNA binding protein 2|CUG-BP- and ETR-3-like factor 2|CUG-BP2|CUGBP Elav-like family member 2|ELAV-type RNA-binding protein 3|RNA-binding protein BRUNOL-3|bruno-like protein 3|hNAPOR|neuroblastoma apoptosis-related RNA-binding protein 20121230 -9606 10660 LBX1 RP11-324L3.2 HPX-6|HPX6|LBX1H|homeobox HGNC:16960|MIM:604255|Ensembl:ENSG00000138136|HPRD:09178|Vega:OTTHUMG00000018927 10 10q24 ladybird homeobox 1 protein-coding LBX1 ladybird homeobox 1 O lady bird-like homeobox|ladybird homeobox homolog 1|ladybird homeobox protein homolog 1|transcription factor LBX1|transcription factor similar to D. melanogaster homeodomain protein lady bird late 20121230 -9606 10661 KLF1 - EKLF|HBFQTL6|INLU HGNC:6345|MIM:600599|Ensembl:ENSG00000105610|HPRD:07197|Vega:OTTHUMG00000180536 19 19p13.2 Kruppel-like factor 1 (erythroid) protein-coding KLF1 Kruppel-like factor 1 (erythroid) O Krueppel-like factor 1|erythroid Kruppel-like factor|erythroid krueppel-like transcription factor|erythroid-specific transcription factor EKLF|monoclonal antibody A3D8 20121230 -9606 10663 CXCR6 - BONZO|CD186|STRL33|TYMSTR HGNC:16647|MIM:605163|Ensembl:ENSG00000172215|HPRD:05520|Vega:OTTHUMG00000133448 3 3p21 chemokine (C-X-C motif) receptor 6 protein-coding CXCR6 chemokine (C-X-C motif) receptor 6 O C-X-C chemokine receptor type 6|CDw186|CXC-R6|CXCR-6|G protein-coupled receptor|G-protein coupled receptor STRL33|G-protein coupled receptor bonzo 20121230 -9606 10664 CTCF - - HGNC:13723|MIM:604167|Ensembl:ENSG00000102974|HPRD:05005|Vega:OTTHUMG00000137539 16 16q21-q22.3 CCCTC-binding factor (zinc finger protein) protein-coding CTCF CCCTC-binding factor (zinc finger protein) O 11 zinc finger transcriptional repressor|11-zinc finger protein|CTCFL paralog|transcriptional repressor CTCF 20121230 -9606 10665 C6orf10 DAAP-279L6.1 TSBP HGNC:13922|Ensembl:ENSG00000204296|HPRD:09851|Vega:OTTHUMG00000031107 6 6p21.3 chromosome 6 open reading frame 10 protein-coding C6orf10 chromosome 6 open reading frame 10 O testis specific basic protein|uncharacterized protein C6orf10 20121230 -9606 10666 CD226 - DNAM-1|DNAM1|PTA1|TLiSA1 HGNC:16961|MIM:605397|Ensembl:ENSG00000150637|HPRD:09252|Vega:OTTHUMG00000132809 18 18q22.3 CD226 molecule protein-coding CD226 CD226 molecule O CD226 antigen|DNAX accessory molecule 1|DNAX accessory molecule-1|T lineage-specific activation antigen 1 antigen|adhesion glycoprotein|platelet and T cell activation antigen 1 20121230 -9606 10667 FARS2 RP1-236A3.1 COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2 HGNC:21062|MIM:611592|Ensembl:ENSG00000145982|HPRD:09946|Vega:OTTHUMG00000014178 6 6p25.1 phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial O dJ236A3.1 (phenylalanine-tRNA synthetase)|dJ520B18.2 (FARS1 (phenylalanine-tRNA synthetase))|phenylalanine tRNA ligase 2, mitochondrial|phenylalanine translase|phenylalanine--tRNA ligase, mitochondrial|phenylalanine-tRNA synthetase 1 (mitochondrial)|phenylalanine-tRNA synthetase 2 (mitochondrial) 20121230 -9606 10668 CGRRF1 - CGR19|RNF197 HGNC:15528|MIM:606138|Ensembl:ENSG00000100532|HPRD:09366|Vega:OTTHUMG00000140308 14 14q22.2 cell growth regulator with ring finger domain 1 protein-coding CGRRF1 cell growth regulator with ring finger domain 1 O RING finger protein 197|cell growth regulator with RING finger domain protein 1|cell growth regulatory gene 19 protein 20121230 -9606 10669 CGREF1 - CGR11 HGNC:16962|MIM:606137|Ensembl:ENSG00000138028|HPRD:09365|Vega:OTTHUMG00000152009 2 2p23.3 cell growth regulator with EF-hand domain 1 protein-coding CGREF1 cell growth regulator with EF-hand domain 1 O cell growth regulator with EF hand domain 1|cell growth regulator with EF hand domain protein 1|cell growth regulatory gene 11 protein|hydrophobestin 20121230 -9606 10670 RRAGA - FIP-1|FIP1|RAGA HGNC:16963|MIM:612194|Ensembl:ENSG00000155876|HPRD:10205|Vega:OTTHUMG00000019621 9 9p22.1 Ras-related GTP binding A protein-coding RRAGA Ras-related GTP binding A O adenovirus E3 14.7 kDa-interacting protein 1|adenovirus E3-14.7K interacting protein 1|rag A|ras-related GTP-binding protein A 20121230 -9606 10671 DCTN6 - WS-3|WS3|p27 HGNC:16964|MIM:612963|Ensembl:ENSG00000104671|HPRD:09907|Vega:OTTHUMG00000163828 8 8p12-p11 dynactin 6 protein-coding DCTN6 dynactin 6 O dynactin subunit 6|dynactin subunit p27|novel RGD-containing protein|protein WS-3 20121230 -9606 10672 GNA13 - G13 HGNC:4381|MIM:604406|Ensembl:ENSG00000120063|HPRD:05100|Vega:OTTHUMG00000179316 17 17q24.3 guanine nucleotide binding protein (G protein), alpha 13 protein-coding GNA13 guanine nucleotide binding protein (G protein), alpha 13 O G-protein subunit alpha-13|g alpha-13|guanine nucleotide-binding protein subunit alpha-13 20121230 -9606 10673 TNFSF13B RP11-153I24.1 BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|ZTNF4 HGNC:11929|MIM:603969|Ensembl:ENSG00000102524|HPRD:04914|Vega:OTTHUMG00000017329 13 13q32-q34 tumor necrosis factor (ligand) superfamily, member 13b protein-coding TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b O ApoL related ligand TALL-1|B-cell-activating factor|B-lymphocyte stimulator|Delta4 BAFF|TNF and ApoL-related leukocyte expressed ligand 1|TNF homolog that activates apoptosis|delta BAFF|dendritic cell-derived TNF-like molecule|tumor necrosis factor (ligand) superfamily, member 20|tumor necrosis factor ligand superfamily member 13B|tumor necrosis factor-like protein ZTNF4 20121230 -9606 10674 DURS1 - DUS HGNC:3063|MIM:126800 8 8q13 Duane retraction syndrome 1 unknown DURS1 Duane retraction syndrome 1 O - 20120622 -9606 10675 CSPG5 - NGC HGNC:2467|MIM:606775|Ensembl:ENSG00000114646|Vega:OTTHUMG00000133518 3 3p21.3 chondroitin sulfate proteoglycan 5 (neuroglycan C) protein-coding CSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C) O acidic leucine-rich EGF-like domain-containing brain protein|chondroitin sulfate proteoglycan 5 20121230 -9606 10677 AVIL - ADVIL|DOC6|p92 HGNC:14188|MIM:613397|Ensembl:ENSG00000135407|HPRD:09816|Vega:OTTHUMG00000170461 12 12q14.1 advillin protein-coding AVIL advillin O - 20121230 -9606 10678 B3GNT2 - B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2 HGNC:15629|MIM:605581|Ensembl:ENSG00000170340|HPRD:09279|Vega:OTTHUMG00000129444 2 2p15 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 O UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1|beta-1,3-Gn-T1|beta-1,3-Gn-T2|beta-1,3-N-acetylglucosaminyltransferase bGnT-1|beta-1,3-N-acetylglucosaminyltransferase bGnT-2|beta3Gn-T1|beta3Gn-T2 20121230 -9606 10681 GNB5 - GB5 HGNC:4401|MIM:604447|Ensembl:ENSG00000069966|HPRD:09191|Vega:OTTHUMG00000131892 15 15q21.2 guanine nucleotide binding protein (G protein), beta 5 protein-coding GNB5 guanine nucleotide binding protein (G protein), beta 5 O G protein, beta subunit 5L|G protein, beta-5 subunit|gbeta5|guanine nucleotide-binding protein subunit beta-5|guanine nucleotide-binding protein, beta subunit 5L|transducin beta chain 5 20121230 -9606 10682 EBP - CDPX2|CHO2|CPX|CPXD HGNC:3133|MIM:300205|Ensembl:ENSG00000147155|HPRD:02192|Vega:OTTHUMG00000034482 X Xp11.23-p11.22 emopamil binding protein (sterol isomerase) protein-coding EBP emopamil binding protein (sterol isomerase) O 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase|3-beta-hydroxysteroid-delta-8,delta-7-isomerase|Chondrodysplasia punctata-2, X-linked dominant (Happle syndrome)|D8-D7 sterol isomerase|cholestenol Delta-isomerase|delta(8)-Delta(7) sterol isomerase|emopamil-binding protein (sterol isomerase)|sterol 8-isomerase 20121230 -9606 10683 DLL3 - SCDO1 HGNC:2909|MIM:602768|Ensembl:ENSG00000090932|HPRD:04140 19 19q13 delta-like 3 (Drosophila) protein-coding DLL3 delta-like 3 (Drosophila) O delta-like protein 3|delta3|drosophila Delta homolog 3 20121230 -9606 10686 CLDN16 - HOMG3|PCLN1 HGNC:2037|MIM:603959|Ensembl:ENSG00000113946|HPRD:04906|Vega:OTTHUMG00000156215 3 3q28 claudin 16 protein-coding CLDN16 claudin 16 O PCLN-1|claudin-16|hypomagnesemia 3, with hypercalciuria and nephrocalcinosis|paracellin-1 20121230 -9606 10687 PNMA2 - MA2|MM2|RGAG2 HGNC:9159|MIM:603970|Ensembl:ENSG00000240694|Vega:OTTHUMG00000163816 8 8p21.2 paraneoplastic Ma antigen 2 protein-coding PNMA2 paraneoplastic Ma antigen 2 O 40 kDa neuronal protein|onconeuronal antigen MA2|paraneoplastic antigen Ma2|paraneoplastic neuronal antigen MM2|retrotransposon gag domain containing 2 20121230 -9606 10688 CRSP5 - CRSP85 HGNC:2374 - - cofactor required for Sp1 transcriptional activation, subunit 5, 85kDa protein-coding CRSP5 cofactor required for Sp1 transcriptional activation, subunit 5, 85kDa O - 20121209 -9606 10690 FUT9 - Fuc-TIX HGNC:4020|MIM:606865|Ensembl:ENSG00000172461|HPRD:06036|Vega:OTTHUMG00000015236 6 6q16 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) protein-coding FUT9 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) O alpha-(1,3)-fucosyltransferase|fucT-IX|fucosyltransferase IX|galactoside 3-L-fucosyltransferase 20121230 -9606 10691 GMEB1 - P96PIF|PIF96 HGNC:4370|MIM:604409|Ensembl:ENSG00000162419|HPRD:16059|Vega:OTTHUMG00000003647 1 1p35.3 glucocorticoid modulatory element binding protein 1 protein-coding GMEB1 glucocorticoid modulatory element binding protein 1 O DNA-binding protein p96PIF|GMEB-1|PIF p96|glucocorticoid modulatory element-binding protein 1|parvovirus initiation factor p96 20121230 -9606 10692 RRH - - HGNC:10450|MIM:605224|Ensembl:ENSG00000180245|HPRD:05565|Vega:OTTHUMG00000132045 4 4q25 retinal pigment epithelium-derived rhodopsin homolog protein-coding RRH retinal pigment epithelium-derived rhodopsin homolog O peropsin|visual pigment-like receptor peropsin 20121230 -9606 10693 CCT6B - CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 HGNC:1621|MIM:610730|Ensembl:ENSG00000132141|HPRD:09873|Vega:OTTHUMG00000179770 17 17q12 chaperonin containing TCP1, subunit 6B (zeta 2) protein-coding CCT6B chaperonin containing TCP1, subunit 6B (zeta 2) O T-complex protein 1 subunit zeta-2|T-complex protein 1, zeta-2 subunit|testis-specific Tcp20|testis-specific protein TSA303 20121230 -9606 10694 CCT8 - C21orf112|Cctq|D21S246|PRED71 HGNC:1623|Ensembl:ENSG00000156261|HPRD:10816|Vega:OTTHUMG00000044595 21 21q22.11 chaperonin containing TCP1, subunit 8 (theta) protein-coding CCT8 chaperonin containing TCP1, subunit 8 (theta) O CCT-theta|T-complex protein 1 subunit theta|T-complex protein 1, theta subunit|TCP-1-theta|renal carcinoma antigen NY-REN-15 20121230 -9606 10695 CNPY3 HSPC084 CAG4A|ERDA5|PRAT4A|TNRC5 HGNC:11968|MIM:610774|Ensembl:ENSG00000137161|HPRD:06745|Vega:OTTHUMG00000014708 6 6pter-p12.1 canopy 3 homolog (zebrafish) protein-coding CNPY3 canopy 3 homolog (zebrafish) O CAG repeat containing|CTG repeat protein 4a|expanded repeat domain, CAG/CTG 5|expanded repeat-domain protein CAG/CTG 5|protein associated with TLR4|protein associated with Toll-like receptor 4A|protein canopy homolog 3|trinucleotide repeat containing 5|trinucleotide repeat-containing gene 5 protein 20121230 -9606 10699 CORIN - ATC2|CRN|Lrp4|PEE5|TMPRSS10 HGNC:19012|MIM:605236|Ensembl:ENSG00000145244|HPRD:05573|Vega:OTTHUMG00000099441 4 4p13-p12 corin, serine peptidase protein-coding CORIN corin, serine peptidase O atrial natriuretic peptide-converting enzyme|heart-specific serine proteinase ATC2|pro-ANP-convertase|pro-ANP-converting enzyme|transmembrane protease serine 10 20121230 -9606 10712 FAM189B - C1orf2|COTE1 HGNC:1233|Ensembl:ENSG00000160767|HPRD:08511|Vega:OTTHUMG00000035844 1 1q21 family with sequence similarity 189, member B protein-coding FAM189B family with sequence similarity 189, member B O protein FAM189B 20121230 -9606 10713 USP39 CGI-21 65K|HSPC332|SAD1|SNRNP65 HGNC:20071|MIM:611594|Ensembl:ENSG00000168883|HPRD:07165|Vega:OTTHUMG00000153090 2 2p11.2 ubiquitin specific peptidase 39 protein-coding USP39 ubiquitin specific peptidase 39 O SAD1 homolog|SnRNP assembly defective 1 homolog|U4/U6.U5 tri-snRNP-associated 65 kDa protein|U4/U6.U5 tri-snRNP-associated protein 2|inactive ubiquitin-specific peptidase 39|small nuclear ribonucleoprotein 65kDa (U4/U6.U5)|ubiquitin specific protease 39 20121230 -9606 10714 POLD3 - P66|P68 HGNC:20932|MIM:611415|Ensembl:ENSG00000077514|HPRD:11446|Vega:OTTHUMG00000165621 11 11q14 polymerase (DNA-directed), delta 3, accessory subunit protein-coding POLD3 polymerase (DNA-directed), delta 3, accessory subunit O DNA polymerase delta subunit 3|DNA polymerase delta subunit p66|Pol delta C subunit (p66) 20121230 -9606 10715 CERS1 - LAG1|LASS1|UOG1 HGNC:14253|MIM:606919|Ensembl:ENSG00000223802|HPRD:12114 19 19p12 ceramide synthase 1 protein-coding CERS1 ceramide synthase 1 O longevity assurance (LAG1, S. cerevisiae) homolog 1|longevity assurance gene 1 protein homolog 1|protein UOG-1|upstream of GDF1 20121230 -9606 10716 TBR1 - TBR-1|TES-56 HGNC:11590|MIM:604616|Ensembl:ENSG00000136535|HPRD:07055|Vega:OTTHUMG00000153888 2 2q24 T-box, brain, 1 protein-coding TBR1 T-box, brain, 1 O T-box brain protein 1|T-brain-1 20121230 -9606 10717 AP4B1 RP5-1073O3.4 BETA-4|CPSQ5|SPG47 HGNC:572|MIM:607245|Ensembl:ENSG00000134262|HPRD:06259|Vega:OTTHUMG00000011943 1 1p13.2 adaptor-related protein complex 4, beta 1 subunit protein-coding AP4B1 adaptor-related protein complex 4, beta 1 subunit O AP-4 complex subunit beta-1|beta 4 subunit of AP-4|beta4-adaptin|spastic paraplegia 47 20121230 -9606 10718 NRG3 - HRG3|pro-NRG3 HGNC:7999|MIM:605533|Ensembl:ENSG00000185737|HPRD:16115|Vega:OTTHUMG00000018626 10 10q22-q23 neuregulin 3 protein-coding NRG3 neuregulin 3 O neuregulin 3 variant 1|neuregulin 3 variant 10|neuregulin 3 variant 11|neuregulin 3 variant 12|neuregulin 3 variant 13|neuregulin 3 variant 14|neuregulin 3 variant 3|neuregulin 3 variant 4|neuregulin 3 variant 5|neuregulin 3 variant 6|neuregulin 3 variant 7|neuregulin 3 variant 8|neuregulin 3 variant 9|neuregulin-3-like polypeptide|pro-neuregulin-3, membrane-bound isoform 20121230 -9606 10720 UGT2B11 - - HGNC:12545|MIM:603064|Ensembl:ENSG00000213759|HPRD:04345|Vega:OTTHUMG00000129395 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide B11 protein-coding UGT2B11 UDP glucuronosyltransferase 2 family, polypeptide B11 O UDP glycosyltransferase 2 family protein|UDP glycosyltransferase 2 family, polypeptide B11|UDP-glucuronosyltransferase 2B11|UDPGT 2B11 20121230 -9606 10721 POLQ - POLH|PRO0327 HGNC:9186|MIM:604419|Ensembl:ENSG00000051341|HPRD:10375|Vega:OTTHUMG00000159396 3 3q13.33 polymerase (DNA directed), theta protein-coding POLQ polymerase (DNA directed), theta O DNA polymerase eta|DNA polymerase theta 20121230 -9606 10723 SLC12A7 - KCC4 HGNC:10915|MIM:604879|Ensembl:ENSG00000113504|HPRD:09221|Vega:OTTHUMG00000161931 5 5p15 solute carrier family 12 (potassium/chloride transporters), member 7 protein-coding SLC12A7 solute carrier family 12 (potassium/chloride transporters), member 7 O K-Cl cotransporter 4|electroneutral potassium-chloride cotransporter 4|potassium/chloride transporter KCC4|solute carrier family 12 member 7 20121230 -9606 10724 MGEA5 - MEA5|NCOAT|OGA HGNC:7056|MIM:604039|Ensembl:ENSG00000198408|HPRD:04949|Vega:OTTHUMG00000018939 10 10q24.1-q24.3 meningioma expressed antigen 5 (hyaluronidase) protein-coding MGEA5 meningioma expressed antigen 5 (hyaluronidase) O O-GlcNAcase|bifunctional protein NCOAT|hyaluronidase in meningioma|meningioma-expressed antigen 5|nuclear cytoplasmic O-GlcNAcase and acetyltransferase 20121230 -9606 10725 NFAT5 - NF-AT5|NFATL1|NFATZ|OREBP|TONEBP HGNC:7774|MIM:604708|Ensembl:ENSG00000102908|HPRD:05272|Vega:OTTHUMG00000137572 16 16q22.1 nuclear factor of activated T-cells 5, tonicity-responsive protein-coding NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive O NFAT-like protein 1|T-cell transcription factor NFAT5|TonE-binding protein|glutamine rich protein H65|nuclear factor of activated T-cells 5|osmotic response element-binding protein|tonicity-responsive enhancer-binding protein 20121230 -9606 10726 NUDC - HNUDC|MNUDC|NPD011 HGNC:8045|MIM:610325|Ensembl:ENSG00000090273|HPRD:10122|Vega:OTTHUMG00000004226 1 1p35-p34 nuclear distribution C homolog (A. nidulans) protein-coding NUDC nuclear distribution C homolog (A. nidulans) O nuclear distribution gene C homolog|nuclear distribution protein C homolog|nuclear migration protein nudC 20121230 -9606 10728 PTGES3 - P23|TEBP|cPGES HGNC:16049|MIM:607061|Ensembl:ENSG00000110958|HPRD:06138|Vega:OTTHUMG00000170217 12 12q13.3|12 prostaglandin E synthase 3 (cytosolic) protein-coding PTGES3 prostaglandin E synthase 3 (cytosolic) O Hsp90 co-chaperone|cytosolic prostaglandin E synthase|cytosolic prostaglandin E2 synthase|progesterone receptor complex p23|prostaglandin E synthase 3|telomerase-binding protein p23|unactive progesterone receptor, 23 kD 20121230 -9606 10730 YME1L1 RP11-145E8.2 FTSH|MEG4|PAMP|YME1L HGNC:12843|MIM:607472|Ensembl:ENSG00000136758|HPRD:06981|Vega:OTTHUMG00000017853 10 10p14 YME1-like 1 (S. cerevisiae) protein-coding YME1L1 YME1-like 1 (S. cerevisiae) O ATP-dependent metalloprotease FtsH1 homolog|ATP-dependent metalloprotease YME1L1|ATP-dependent zinc metalloprotease YME1L1|YME1-like protein 1|meg-4|presenilin-associated metalloprotease 20121230 -9606 10732 TCFL5 - CHA|E2BP-1|Figlb|bHLHe82 HGNC:11646|MIM:604745|Ensembl:ENSG00000101190|HPRD:05297|Vega:OTTHUMG00000032939 20 20q13.3-qter transcription factor-like 5 (basic helix-loop-helix) protein-coding TCFL5 transcription factor-like 5 (basic helix-loop-helix) O HPV-16 E2 binding protein 1|HPV-16 E2-binding protein 1|cha transcription factor|transcription factor-like 5 protein 20121230 -9606 10733 PLK4 - SAK|STK18 HGNC:11397|MIM:605031|Ensembl:ENSG00000142731|HPRD:10387|Vega:OTTHUMG00000133301 4 4q28 polo-like kinase 4 protein-coding PLK4 polo-like kinase 4 O PLK-4|Snk akin kinase|serine/threonine kinase 18|serine/threonine protein kinase SAK|serine/threonine-protein kinase 18|serine/threonine-protein kinase PLK4|serine/threonine-protein kinase Sak 20121230 -9606 10734 STAG3 - - HGNC:11356|MIM:608489|Ensembl:ENSG00000066923|HPRD:10253|Vega:OTTHUMG00000155183 7 7q22.1 stromal antigen 3 protein-coding STAG3 stromal antigen 3 O SCC3 homolog 3|cohesin subunit SA-3|stromalin 3|stromalin-3 20121230 -9606 10735 STAG2 RP11-517O1.1 SA-2|SA2|SCC3B|bA517O1.1 HGNC:11355|MIM:300826|Ensembl:ENSG00000101972|HPRD:05077|Vega:OTTHUMG00000022725 X Xq25 stromal antigen 2 protein-coding STAG2 stromal antigen 2 O SCC3 homolog 2|cohesin subunit SA-2 20121230 -9606 10736 SIX2 - - HGNC:10888|MIM:604994|Ensembl:ENSG00000170577|HPRD:05408|Vega:OTTHUMG00000152421 2 2p21 SIX homeobox 2 protein-coding SIX2 SIX homeobox 2 O homeobox protein SIX2|sine oculis homeobox homolog 2 20121230 -9606 10737 RFPL3-AS1 RP1-149A16.4 NCRNA00005|RFPL3-AS|RFPL3ANT|RFPL3AS|RFPL3S|dJ149A16.3 HGNC:9981|MIM:605971 22 22q12.3 RFPL3 antisense RNA 1 miscRNA RFPL3-AS1 RFPL3 antisense RNA 1 O - 20121230 -9606 10738 RFPL3 RP1-149A16.1 - HGNC:9980|MIM:605970|Ensembl:ENSG00000128276|HPRD:09339|Vega:OTTHUMG00000030290 22 22q12.3 ret finger protein-like 3 protein-coding RFPL3 ret finger protein-like 3 O - 20121230 -9606 10739 RFPL2 - RNF79 HGNC:9979|MIM:605969|Ensembl:ENSG00000128253|HPRD:09338|Vega:OTTHUMG00000030374 22 22q12.3 ret finger protein-like 2 protein-coding RFPL2 ret finger protein-like 2 O RING finger protein 79 20121230 -9606 10740 RFPL1-AS1 - NCRNA00006|RFPL1-AS|RFPL1AS|RFPL1S HGNC:9978|MIM:605972 22 22q12 RFPL1 antisense RNA 1 miscRNA RFPL1-AS1 RFPL1 antisense RNA 1 O - 20121230 -9606 10741 RBBP9 - BOG|RBBP10 HGNC:9892|MIM:602908|Ensembl:ENSG00000089050|HPRD:04217|Vega:OTTHUMG00000031972 20 20p11.2 retinoblastoma binding protein 9 protein-coding RBBP9 retinoblastoma binding protein 9 O B5T overexpressed gene protein|B5T-overexpressed gene protein|RBBP-10|RBBP-9|putative hydrolase RBBP9|retinoblastoma-binding protein 10|retinoblastoma-binding protein 9|retinoma-binding protein 9 20121230 -9606 10742 RAI2 RP3-389A20.3 - HGNC:9835|MIM:300217|Ensembl:ENSG00000131831|HPRD:02199|Vega:OTTHUMG00000021209 X Xp22 retinoic acid induced 2 protein-coding RAI2 retinoic acid induced 2 O retinoic acid-induced protein 2 20121230 -9606 10743 RAI1 - SMCR|SMS HGNC:9834|MIM:607642|Ensembl:ENSG00000108557|HPRD:07406|Vega:OTTHUMG00000059314 17 17p11.2 retinoic acid induced 1 protein-coding RAI1 retinoic acid induced 1 O Smith-Magenis syndrome chromosome region|retinoic acid-induced protein 1 20121230 -9606 10744 PTTG2 - - HGNC:9691|MIM:604231|Ensembl:ENSG00000250254|HPRD:09176|Vega:OTTHUMG00000160424 4 4p12 pituitary tumor-transforming 2 protein-coding PTTG2 pituitary tumor-transforming 2 O pituitary tumor-transforming gene 2 protein|securin-2 20121230 -9606 10745 PHTF1 RP4-730K3.2 PHTF HGNC:8939|MIM:604950|Ensembl:ENSG00000116793|HPRD:09227|Vega:OTTHUMG00000011800 1 1p13 putative homeodomain transcription factor 1 protein-coding PHTF1 putative homeodomain transcription factor 1 O - 20121230 -9606 10746 MAP3K2 - MEKK2|MEKK2B HGNC:6854|MIM:609487|Ensembl:ENSG00000169967|HPRD:10068|Vega:OTTHUMG00000153397 2 2q14.3 mitogen-activated protein kinase kinase kinase 2 protein-coding MAP3K2 mitogen-activated protein kinase kinase kinase 2 O MAP/ERK kinase kinase 2|MAPK/ERK kinase kinase 2|MEK kinase 2|MEKK 2 20121230 -9606 10747 MASP2 - MAP19|MASP-2|MASP1P1|sMAP HGNC:6902|MIM:605102|Ensembl:ENSG00000009724|HPRD:05484|Vega:OTTHUMG00000002121 1 1p36.3-p36.2 mannan-binding lectin serine peptidase 2 protein-coding MASP2 mannan-binding lectin serine peptidase 2 O MBL-associated plasma protein of 19 kD|MBL-associated serine protease 2|mannan-binding lectin serine peptidase 1 pseudogene 1|mannan-binding lectin serine protease 1 pseudogene 1|mannan-binding lectin serine protease 2|mannose-binding protein-associated serine protease 2|small MBL-associated protein 20121230 -9606 10748 KLRAP1 - KLRA#|KLRA1|LY49L|Ly-49L|Ly49 HGNC:6372|MIM:604274|HPRD:09180 12 12p13.2 killer cell lectin-like receptor subfamily A pseudogene 1 pseudo KLRAP1 killer cell lectin-like receptor subfamily A pseudogene 1 O - 20121230 -9606 10749 KIF1C - LTXS1 HGNC:6317|MIM:603060|Ensembl:ENSG00000129250|HPRD:04342|Vega:OTTHUMG00000099451 17 17p13.2 kinesin family member 1C protein-coding KIF1C kinesin family member 1C O kinesin-like protein KIF1C 20121230 -9606 10750 GRAP - - HGNC:4562|MIM:604330|Ensembl:ENSG00000154016|HPRD:05062|Vega:OTTHUMG00000059436 17 17p11.2 GRB2-related adaptor protein protein-coding GRAP GRB2-related adaptor protein O GRB2-related adapter protein|growth factor receptor-bound protein 2-related adaptor protein 20121230 -9606 10751 OFD1P18Y - 71-7A2|CYorf1|OFD1P18|OFD1PY18 HGNC:2589 Y Yq11.22 OFD1 pseudogene 18, Y-linked pseudo OFD1P18Y OFD1 pseudogene 18, Y-linked O - 20121209 -9606 10752 CHL1 - CALL|L1CAM2 HGNC:1939|MIM:607416|Ensembl:ENSG00000134121|HPRD:07598|Vega:OTTHUMG00000090601 3 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) protein-coding CHL1 cell adhesion molecule with homology to L1CAM (close homolog of L1) O L1 cell adhesion molecule 2|cell adhesion molecule with homology to L1CAM (close homologue of L1)|close homolog of L1|neural cell adhesion molecule L1-like protein 20121230 -9606 10753 CAPN9 - GC36|nCL-4 HGNC:1486|MIM:606401|Ensembl:ENSG00000135773|HPRD:05909|Vega:OTTHUMG00000037779 1 1q42.11-q42.3 calpain 9 protein-coding CAPN9 calpain 9 O calpain-9|digestive tract-specific calpain|new calpain 4|novel calpain large subunit-4 20121230 -9606 10755 GIPC1 - C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 HGNC:1226|MIM:605072|Ensembl:ENSG00000123159|HPRD:05462|Vega:OTTHUMG00000182248 19 19p13.1 GIPC PDZ domain containing family, member 1 protein-coding GIPC1 GIPC PDZ domain containing family, member 1 O GAIP C-terminus-interacting protein|GLUT1 C-terminal binding protein|IGF-1 receptor interacting protein 1|PDZ domain-containing protein GIPC1|RGS-GAIP-interacting protein|RGS19-interacting protein 1|regulator of G-protein signalling 19 interacting protein 1|tax interaction protein 2 20121230 -9606 10758 TRAF3IP2 RP3-487J7.3 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CIKS|PSORS13 HGNC:1343|MIM:607043|Ensembl:ENSG00000056972|HPRD:06129|Vega:OTTHUMG00000015379 6 6q21 TRAF3 interacting protein 2 protein-coding TRAF3IP2 TRAF3 interacting protein 2 O NFkB-activating protein ACT1|adapter protein CIKS|connection to IKK and SAPK/JNK|nuclear factor NF-kappa-B activator 1 20121230 -9606 10761 PLAC1 - CT92 HGNC:9044|MIM:300296|Ensembl:ENSG00000170965|HPRD:02245|Vega:OTTHUMG00000022457 X Xq26 placenta-specific 1 protein-coding PLAC1 placenta-specific 1 O cancer/testis antigen 92|placenta-specific protein 1 20121230 -9606 10762 NUP50 CTA-268H5.7 NPAP60|NPAP60L HGNC:8065|MIM:604646|Ensembl:ENSG00000093000|HPRD:05226|Vega:OTTHUMG00000151265 22 22q13.31 nucleoporin 50kDa protein-coding NUP50 nucleoporin 50kDa O 50 kDa nucleoporin|nuclear pore complex protein Nup50|nuclear pore-associated protein 60L|nucleoporin Nup50 20121230 -9606 10763 NES Nbla00170 - HGNC:7756|MIM:600915|Ensembl:ENSG00000132688|HPRD:09020|Vega:OTTHUMG00000034299 1 1q23.1 nestin protein-coding NES nestin O - 20121230 -9606 10765 KDM5B - CT31|JARID1B|PLU-1|PLU1|PUT1|RBBP2H1A HGNC:18039|MIM:605393|Ensembl:ENSG00000117139|HPRD:09251|Vega:OTTHUMG00000041401 1 1q32.1 lysine (K)-specific demethylase 5B protein-coding KDM5B lysine (K)-specific demethylase 5B O RBP2-H1|cancer/testis antigen 31|histone demethylase JARID1B|jumonji, AT rich interactive domain 1B|jumonji/ARID domain-containing protein 1B|lysine-specific demethylase 5B|putative DNA/chromatin binding motif|retinoblastoma-binding protein 2 homolog 1|retinoblastoma-binding protein 2, homolog 1A 20121230 -9606 10766 TOB2 CTA-223H9.7 TOB4|TOBL|TROB2 HGNC:11980|MIM:607396|Ensembl:ENSG00000183864|HPRD:09583|Vega:OTTHUMG00000150970 22 22q13.2 transducer of ERBB2, 2 protein-coding TOB2 transducer of ERBB2, 2 O protein Tob2|protein Tob4|transducer of erbB-2 2 20121230 -9606 10767 HBS1L RP11-349J5.1 EF-1a|ERFS|HBS1|HSPC276 HGNC:4834|MIM:612450|Ensembl:ENSG00000112339|HPRD:06582|Vega:OTTHUMG00000015626 6 6q23.3 HBS1-like (S. cerevisiae) protein-coding HBS1L HBS1-like (S. cerevisiae) O ERF3-similar protein|HBS1-like protein|Hsp70 subfamily B suppressor 1-like protein 20121230 -9606 10768 AHCYL1 - DCAL|IRBIT|PRO0233|XPVKONA HGNC:344|MIM:607826|Ensembl:ENSG00000168710|HPRD:07613|Vega:OTTHUMG00000011652 1 1p13.2 adenosylhomocysteinase-like 1 protein-coding AHCYL1 adenosylhomocysteinase-like 1 O DC-expressed AHCY-like molecule|S-adenosyl homocysteine hydrolase homolog|S-adenosyl-L-homocysteine hydrolase 2|S-adenosylhomocysteine hydrolase-like protein 1|adoHcyase 2|dendritic cell expressed AHCY-like protein|inositol 1,4,5-trisphosphate receptor-binding protein|putative adenosylhomocysteinase 2 20121230 -9606 10769 PLK2 - SNK|hPlk2|hSNK HGNC:19699|MIM:607023|Ensembl:ENSG00000145632|HPRD:06118|Vega:OTTHUMG00000097047 5 5q12.1-q13.2 polo-like kinase 2 protein-coding PLK2 polo-like kinase 2 O PLK-2|serine/threonine-protein kinase PLK2|serine/threonine-protein kinase SNK|serum-inducible kinase 20121230 -9606 10771 ZMYND11 RP11-486H9.1 BRAM1|BS69 HGNC:16966|MIM:608668|Ensembl:ENSG00000015171|Ensembl:ENSG00000259741|HPRD:09830|Vega:OTTHUMG00000017526 10 10p14 zinc finger, MYND-type containing 11 protein-coding ZMYND11 zinc finger, MYND-type containing 11 O adenovirus 5 E1A-binding protein|bone morphogenetic protein receptor-associated molecule 1|zinc finger MYND domain-containing protein 11 20121230 -9606 10772 SRSF10 RP11-4M23.6 FUSIP1|FUSIP2|NSSR|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 HGNC:16713|MIM:605221|Ensembl:ENSG00000188529|HPRD:05562|Vega:OTTHUMG00000013893 1 1p36.11 serine/arginine-rich splicing factor 10 protein-coding SRSF10 serine/arginine-rich splicing factor 10 O 40 kDa SR-repressor protein|FUS interacting protein (serine-arginine rich) 1|FUS-interacting protein (serine-arginine rich) 2|FUS-interacting serine-arginine-rich protein 1|SR splicing factor 10|TLS-associated SR protein|TLS-associated protein TASR|TLS-associated protein with SR repeats|TLS-associated protein with Ser-Arg repeats|TLS-associated serine-arginine protein 1|TLS-associated serine-arginine protein 2|neural-salient SR protein|serine-arginine repressor protein (40 kDa)|splicing factor SRp38|splicing factor, arginine/serine-rich 13|splicing factor, arginine/serine-rich 13A 20121230 -9606 10773 ZBTB6 - ZID|ZNF482 HGNC:16764|MIM:605976|Ensembl:ENSG00000186130|HPRD:09341|Vega:OTTHUMG00000020628 9 9q33.2 zinc finger and BTB domain containing 6 protein-coding ZBTB6 zinc finger and BTB domain containing 6 O zinc finger and BTB domain-containing protein 6|zinc finger protein 482|zinc finger protein with interaction domain 20121230 -9606 10774 DHS - - MIM:194380 16 16q23-q24 dehydrated hereditary stomatocytosis unknown - - - - 20120622 -9606 10775 POP4 - RPP29 HGNC:30081|MIM:606114|Ensembl:ENSG00000105171|HPRD:09358|Vega:OTTHUMG00000182020 19 19q12 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) protein-coding POP4 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) O hPOP4|ribonuclease P protein subunit p29 20121230 -9606 10776 ARPP19 - ARPP-16|ARPP-19|ARPP16|ENSAL HGNC:16967|MIM:605487|Ensembl:ENSG00000128989|HPRD:09264|Vega:OTTHUMG00000172677 15 15q21.2 cAMP-regulated phosphoprotein, 19kDa protein-coding ARPP19 cAMP-regulated phosphoprotein, 19kDa O cAMP-regulated phosphoprotein 19|cyclic AMP phosphoprotein, 19 kD 20121230 -9606 10777 ARPP21 - ARPP-21|R3HDM3|RCS|TARPP HGNC:16968|MIM:605488|Ensembl:ENSG00000172995|HPRD:09265|Vega:OTTHUMG00000130795 3 3p22.3 cAMP-regulated phosphoprotein, 21kDa protein-coding ARPP21 cAMP-regulated phosphoprotein, 21kDa O R3H domain containing 3|cAMP-regulated phosphoprotein 21|cyclic AMP-regulated phosphoprotein, 21 kD|thymocyte cAMP-regulated phosphoprotein 20121230 -9606 10778 ZNF271 - HZF7|ZNFEB HGNC:13065|MIM:604754|HPRD:06884 18 18q12 zinc finger protein 271 pseudo ZNF271 zinc finger protein 271 O - 20121230 -9606 10780 ZNF234 - HZF4|ZNF269 HGNC:13027|MIM:604750|Ensembl:ENSG00000263002|HPRD:09206|Vega:OTTHUMG00000182337 19 19q13.31 zinc finger protein 234 protein-coding ZNF234 zinc finger protein 234 O C2-H2 type zinc finger protein|Homo sapiens zinc finger 234|zinc finger protein 234, partial sequence|zinc finger protein 269|zinc finger protein 4|zinc finger protein HZF4 20121230 -9606 10781 ZNF266 - HZF1 HGNC:13059|MIM:604751|Ensembl:ENSG00000174652|HPRD:06882|Vega:OTTHUMG00000179945 19 19p13.2 zinc finger protein 266 protein-coding ZNF266 zinc finger protein 266 O zinc finger protein 1|zinc finger protein HZF1 20121230 -9606 10782 ZNF274 SP2114 HFB101|ZF2|ZKSCAN19 HGNC:13068|MIM:605467|Ensembl:ENSG00000171606|HPRD:05682 19 19qter zinc finger protein 274 protein-coding ZNF274 zinc finger protein 274 O KRAB zinc finger protein HFB101|neurotrophin receptor-interacting factor homolog|zinc finger protein HFB101|zinc finger protein with KRAB and SCAN domains 19|zinc finger protein zfp2 20121230 -9606 10783 NEK6 RP11-101K10.6 SID6-1512 HGNC:7749|MIM:604884|Ensembl:ENSG00000119408|HPRD:05348|Vega:OTTHUMG00000020650 9 9q33.3-q34.11 NIMA-related kinase 6 protein-coding NEK6 NIMA-related kinase 6 O NIMA (never in mitosis gene a)-related kinase 6|never in mitosis A-related kinase 6|nimA-related protein kinase 6|protein kinase SID6-1512|putative serine-threonine protein kinase|serine/threonine-protein kinase Nek6 20121230 -9606 10785 WDR4 - TRM82|TRMT82 HGNC:12756|MIM:605924|Ensembl:ENSG00000160193|HPRD:09330|Vega:OTTHUMG00000086826 21 21q22.3 WD repeat domain 4 protein-coding WDR4 WD repeat domain 4 O TRM82 tRNA methyltransferase 82 homolog|WD repeat-containing protein 4|tRNA (guanine-N(7)-)-methyltransferase subunit WDR4 20121230 -9606 10786 SLC17A3 RP1-139G21.3 NPT4 HGNC:10931|MIM:611034|Ensembl:ENSG00000124564|HPRD:10233|Vega:OTTHUMG00000014412 6 6p21.3 solute carrier family 17 (sodium phosphate), member 3 protein-coding SLC17A3 solute carrier family 17 (sodium phosphate), member 3 O Na(+)/PI cotransporter 4|sodium-dependent phosphate transport protein 4|sodium/phosphate cotransporter 4 20121230 -9606 10787 NCKAP1 - HEM2|NAP1|NAP125 HGNC:7666|MIM:604891|Ensembl:ENSG00000061676|HPRD:05353|Vega:OTTHUMG00000132623 2 2q32 NCK-associated protein 1 protein-coding NCKAP1 NCK-associated protein 1 O NAP 1|membrane-associated protein HEM-2|nck-associated protein 1|p125Nap1 20121230 -9606 10788 IQGAP2 - - HGNC:6111|MIM:605401|Ensembl:ENSG00000145703|HPRD:09253|Vega:OTTHUMG00000162432 5 5q13.3 IQ motif containing GTPase activating protein 2 protein-coding IQGAP2 IQ motif containing GTPase activating protein 2 O ras GTPase-activating-like protein IQGAP2 20121230 -9606 10789 NUDCP2 - - HGNC:8047 2 2q31 nuclear distribution gene C homolog (A. nidulans) pseudogene 2 pseudo NUDCP2 nuclear distribution gene C homolog (A. nidulans) pseudogene 2 O - 20121230 -9606 10790 NUDCP1 - - HGNC:8046 2 2q23.3 nuclear distribution gene C homolog (A. nidulans) pseudogene 1 pseudo NUDCP1 nuclear distribution gene C homolog (A. nidulans) pseudogene 1 O - 20121230 -9606 10791 VAMP5 HSPC191 - HGNC:12646|MIM:607029|Ensembl:ENSG00000168899|HPRD:09513|Vega:OTTHUMG00000130169 2 2p11.2 vesicle-associated membrane protein 5 protein-coding VAMP5 vesicle-associated membrane protein 5 O VAMP-5|myobrevin 20121230 -9606 10793 ZNF273 - HZF9 HGNC:13067|MIM:604756|Ensembl:ENSG00000198039|HPRD:07264|HPRD:14424|Vega:OTTHUMG00000149837 7 7q11.21 zinc finger protein 273 protein-coding ZNF273 zinc finger protein 273 O zinc finger protein 9|zinc finger protein HZF9 20121230 -9606 10794 ZNF460 - HZF8|ZNF272 HGNC:21628|MIM:604755|Ensembl:ENSG00000197714|HPRD:06885 19 19q13.4 zinc finger protein 460 protein-coding ZNF460 zinc finger protein 460 O zinc finger protein 272|zinc finger protein HZF8 20121230 -9606 10795 ZNF268 - HZF3 HGNC:13061|MIM:604753|Ensembl:ENSG00000090612|HPRD:05300|Vega:OTTHUMG00000167946 12 12q24.33 zinc finger protein 268 protein-coding ZNF268 zinc finger protein 268 O zinc finger protein 3|zinc finger protein HZF3 20121230 -9606 10797 MTHFD2 - NMDMC HGNC:7434|MIM:604887|Ensembl:ENSG00000065911|HPRD:05351|Vega:OTTHUMG00000129814 2 2p13.1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase O NAD-dependent methylene tetrahydrofolate dehydrogenase cyclohydrolase|bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial 20121230 -9606 10798 OR5I1 - HSOlf1|OLF1 HGNC:8347|MIM:608496|Ensembl:ENSG00000167825|HPRD:09772|Vega:OTTHUMG00000166821 11 11q11 olfactory receptor, family 5, subfamily I, member 1 protein-coding OR5I1 olfactory receptor, family 5, subfamily I, member 1 O olfactory receptor 5I1|olfactory receptor OR11-159|olfactory receptor-like protein OLF1 20121230 -9606 10799 RPP40 RP11-428J1.3 RNASEP1|bA428J1.3 HGNC:20992|MIM:606117|Ensembl:ENSG00000124787|HPRD:09361|Vega:OTTHUMG00000014168 6 6p25.1 ribonuclease P/MRP 40kDa subunit protein-coding RPP40 ribonuclease P/MRP 40kDa subunit O RNase P subunit 1|RNaseP protein p40|ribonuclease P (40 kD)|ribonuclease P 40kDa subunit|ribonuclease P protein subunit p40|ribonuclease P, 40kD subunit|ribonuclease P1 20121230 -9606 10800 CYSLTR1 - CYSLT1|CYSLT1R|CYSLTR|HG55|HMTMF81 HGNC:17451|MIM:300201|Ensembl:ENSG00000173198|HPRD:02188|Vega:OTTHUMG00000021889 X Xq13.2-q21.1 cysteinyl leukotriene receptor 1 protein-coding CYSLTR1 cysteinyl leukotriene receptor 1 O G-protein coupled receptor HG55|LTD4 receptor|cysteinyl leukotriene D4 receptor 20121230 -9606 10801 SEPT9 - AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 HGNC:7323|MIM:604061|Ensembl:ENSG00000184640|HPRD:10360|Vega:OTTHUMG00000177327 17 17q25 septin 9 protein-coding SEPT9 septin 9 O MLL septin-like fusion protein MSF-A|Ov/Br septin|ovarian/breast septin|septin D1|septin-9 20121230 -9606 10802 SEC24A - - HGNC:10703|MIM:607183|Ensembl:ENSG00000113615|Vega:OTTHUMG00000163064 5 5q31.1 SEC24 family, member A (S. cerevisiae) protein-coding SEC24A SEC24 family, member A (S. cerevisiae) O SEC24 related gene family, member A|SEC24-related protein A|protein transport protein Sec24A 20121230 -9606 10803 CCR9 - CC-CKR-9|CDw199|GPR-9-6|GPR28 HGNC:1610|MIM:604738|Ensembl:ENSG00000173585|HPRD:09200|Vega:OTTHUMG00000133450 3 3p21.3 chemokine (C-C motif) receptor 9 protein-coding CCR9 chemokine (C-C motif) receptor 9 O C-C chemokine receptor type 9|G protein-coupled receptor 28 20121230 -9606 10804 GJB6 - CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 HGNC:4288|MIM:604418|Ensembl:ENSG00000121742|HPRD:05107|Vega:OTTHUMG00000016515 13 13q12 gap junction protein, beta 6, 30kDa protein-coding GJB6 gap junction protein, beta 6, 30kDa O connexin 30|connexin-30|ectodermal dysplasia 2, hidrotic (Clouston syndrome)|gap junction beta-6 protein|gap junction protein, beta 6 (connexin 30) 20121230 -9606 10806 SDCCAG8 HSPC085 BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP HGNC:10671|MIM:613524|Ensembl:ENSG00000054282|HPRD:10215|Vega:OTTHUMG00000039996 1 1q43 serologically defined colon cancer antigen 8 protein-coding SDCCAG8 serologically defined colon cancer antigen 8 O antigen NY-CO-8|centrosomal colon cancer autoantigen protein 20121230 -9606 10807 SDCCAG3 RP11-413M3.3 NY-CO-3 HGNC:10667|Ensembl:ENSG00000165689|HPRD:15307|Vega:OTTHUMG00000020928 9 9q34.3 serologically defined colon cancer antigen 3 protein-coding SDCCAG3 serologically defined colon cancer antigen 3 O antigen NY-CO-3 20121230 -9606 10808 HSPH1 RP11-173P16.1 HSP105|HSP105A|HSP105B|NY-CO-25 HGNC:16969|MIM:610703|Ensembl:ENSG00000120694|HPRD:09990|Vega:OTTHUMG00000016685 13 13q12.3 heat shock 105kDa/110kDa protein 1 protein-coding HSPH1 heat shock 105kDa/110kDa protein 1 O antigen NY-CO-25|heat shock 105kD alpha|heat shock 105kD beta|heat shock 105kDa protein 1|heat shock 110 kDa protein|heat shock protein 105 kDa 20121230 -9606 10809 STARD10 CGI-52 NY-CO-28|PCTP2|SDCCAG28 HGNC:10666|Ensembl:ENSG00000214530|HPRD:18116|Vega:OTTHUMG00000167954 11 11q13 StAR-related lipid transfer (START) domain containing 10 protein-coding STARD10 StAR-related lipid transfer (START) domain containing 10 O PCTP-L|PCTP-like protein|START domain containing 10|START domain-containing protein 10|antigen NY-CO-28|serologically defined colon cancer antigen 28|stAR-related lipid transfer protein 10 20121230 -9606 10810 WASF3 RP11-496O3.2 Brush-1|SCAR3|WAVE3 HGNC:12734|MIM:605068|Ensembl:ENSG00000132970|HPRD:05458|Vega:OTTHUMG00000016621 13 13q12 WAS protein family, member 3 protein-coding WASF3 WAS protein family, member 3 O WASP family Verprolin-homologous protein 3|WASP family protein member 3|protein WAVE-3|verprolin homology domain-containing protein 3|wiskott-Aldrich syndrome protein family member 3 20121230 -9606 10811 NOXA1 - NY-CO-31|SDCCAG31|p51NOX HGNC:10668|MIM:611255|Ensembl:ENSG00000188747|HPRD:17644|Vega:OTTHUMG00000131781 9 9q34.3 NADPH oxidase activator 1 protein-coding NOXA1 NADPH oxidase activator 1 O NCF2-like protein|Nox activator 1|antigen NY-CO-31|inhibitory NADPH oxidase activator 1|p51-nox|p67phox-like factor|serologically defined colon cancer antigen 31 20121230 -9606 10813 UTP14A RP4-537K23.16-001 NYCO16|SDCCAG16|dJ537K23.3 HGNC:10665|MIM:300508|Ensembl:ENSG00000156697|HPRD:06712|Vega:OTTHUMG00000022378 X Xq26.1 UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) protein-coding UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) O U3 small nucleolar RNA-associated protein 14 homolog A|antigen NY-CO-16|serologically defined colon cancer antigen 16 20121230 -9606 10814 CPLX2 - 921-L|CPX-2|CPX2|Hfb1 HGNC:2310|MIM:605033|Ensembl:ENSG00000145920|HPRD:09234|Vega:OTTHUMG00000130665 5 5q35.2 complexin 2 protein-coding CPLX2 complexin 2 O CPX II|complexin II|complexin-2|synaphin 1|synaphin-1 20121230 -9606 10815 CPLX1 - CPX-I|CPX1 HGNC:2309|MIM:605032|Ensembl:ENSG00000168993|HPRD:09233|Vega:OTTHUMG00000160005 4 4p16.3 complexin 1 protein-coding CPLX1 complexin 1 O CPX I|complexin I|complexin-1|synaphin 2|synaphin-2 20121230 -9606 10816 SPINT3 - HKIB9 HGNC:11248|MIM:613941|Ensembl:ENSG00000101446|Vega:OTTHUMG00000032585 20 20q12-q13.1 serine peptidase inhibitor, Kunitz type, 3 protein-coding SPINT3 serine peptidase inhibitor, Kunitz type, 3 O kunitz-type protease inhibitor 3|serine protease inhibitor Kunitz type 3|serine protease inhibitor, Kunitz type, 3 20121230 -9606 10817 FRS3 RP11-298J23.2 FRS2B|FRS2beta|SNT-2|SNT2 HGNC:16970|MIM:607744|Ensembl:ENSG00000137218|HPRD:06373|Vega:OTTHUMG00000014686 6 6p21.1 fibroblast growth factor receptor substrate 3 protein-coding FRS3 fibroblast growth factor receptor substrate 3 O FGFR substrate 3|FGFR-signaling adaptor SNT2|FRS2-beta|suc1-associated neurotrophic factor target 2 (FGFR signalling adaptor) 20121230 -9606 10818 FRS2 - FRS2A|FRS2alpha|SNT|SNT-1|SNT1 HGNC:16971|MIM:607743|Ensembl:ENSG00000166225|HPRD:06372|Vega:OTTHUMG00000169373 12 12q15 fibroblast growth factor receptor substrate 2 protein-coding FRS2 fibroblast growth factor receptor substrate 2 O FGFR signalling adaptor|FGFR substrate 2|FGFR-signaling adaptor SNT|suc1-associated neurotrophic factor target 1 20121230 -9606 10819 OR7E14P - OR11-5|OR7E151P HGNC:8385 11 11p15.1 olfactory receptor, family 7, subfamily E, member 14 pseudogene pseudo OR7E14P olfactory receptor, family 7, subfamily E, member 14 pseudogene O - 20121230 -9606 10820 OR7E13P - OR11-4|OR7E44P|OST022|PJCG2 HGNC:8384 11 11q13-q14.3 olfactory receptor, family 7, subfamily E, member 13 pseudogene pseudo OR7E13P olfactory receptor, family 7, subfamily E, member 13 pseudogene O - 20121230 -9606 10821 OR7E12P - HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 HGNC:8383 11 11p15 olfactory receptor, family 7, subfamily E, member 12 pseudogene pseudo OR7E12P olfactory receptor, family 7, subfamily E, member 12 pseudogene O - 20121230 -9606 10822 OR7E11P - OR11-2|OR7E144P HGNC:8382 11 11q13.2 olfactory receptor, family 7, subfamily E, member 11 pseudogene pseudo OR7E11P olfactory receptor, family 7, subfamily E, member 11 pseudogene O - 20121230 -9606 10823 OR7E10P - OR11-1 HGNC:8381 8 8p23.1 olfactory receptor, family 7, subfamily E, member 10 pseudogene pseudo OR7E10P olfactory receptor, family 7, subfamily E, member 10 pseudogene O - 20121230 -9606 10824 EPAG - - MIM:300347 X Xq21.33 early lymphoid activation protein unknown - - - - 20120511 -9606 10825 NEU3 - SIAL3 HGNC:7760|MIM:604617|Ensembl:ENSG00000162139|HPRD:05215|Vega:OTTHUMG00000165518 11 11q13.5 sialidase 3 (membrane sialidase) protein-coding NEU3 sialidase 3 (membrane sialidase) O N-acetyl-alpha-neuraminidase 3|ganglioside sialidase|membrane sialidase|neuraminidase 3|sialidase-3 20121230 -9606 10826 C5orf4 - - HGNC:1334|Ensembl:ENSG00000170271|HPRD:12832|Vega:OTTHUMG00000164141 5 5q31-q32 chromosome 5 open reading frame 4 protein-coding C5orf4 chromosome 5 open reading frame 4 O uncharacterized protein C5orf4 20121230 -9606 10827 FAM114A2 - 133K02|C5orf3 HGNC:1333|Ensembl:ENSG00000055147|HPRD:12831|Vega:OTTHUMG00000130147 5 5q31-q33 family with sequence similarity 114, member A2 protein-coding FAM114A2 family with sequence similarity 114, member A2 O protein FAM114A2 20121230 -9606 10828 NPM1P19 - - HGNC:7921 20 20q12 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 19 pseudo NPM1P19 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 19 O - 20121230 -9606 10829 NPM1P18 - - HGNC:7920 7 7p14.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 18 pseudo NPM1P18 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 18 O - 20121230 -9606 10830 NPM1P17 - - HGNC:7919 3 3q22.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17 pseudo NPM1P17 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17 O - 20121230 -9606 10831 NPM1P7 - NG7-6|NPM1P16|NPMP7 HGNC:7927 12 12p13.31 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 7 pseudo NPM1P7 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 7 O - 20121230 -9606 10833 NPM1P14 - - HGNC:7916 7 7q31.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 14 pseudo NPM1P14 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 14 O - 20121230 -9606 10834 NPM1P13 - - HGNC:7915 7 7p21.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 13 pseudo NPM1P13 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 13 O - 20121230 -9606 10835 NPM1P12 - - HGNC:7914 7 7q35 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 12 pseudo NPM1P12 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 12 O - 20121230 -9606 10836 NPM1P11 - - HGNC:7913 7 7p21.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 11 pseudo NPM1P11 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 11 O - 20121230 -9606 10837 NPM1P10 - - HGNC:7912 6 6q16.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 10 pseudo NPM1P10 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 10 O - 20121230 -9606 10838 ZNF275 - - HGNC:13069|Ensembl:ENSG00000063587|Vega:OTTHUMG00000067450 X Xq28 zinc finger protein 275 protein-coding ZNF275 zinc finger protein 275 O - 20121230 -9606 10840 ALDH1L1 - 10-FTHFDH|10-fTHF|FDH|FTHFD HGNC:3978|MIM:600249|Ensembl:ENSG00000144908|HPRD:02594|Vega:OTTHUMG00000125551 3 3q21.3 aldehyde dehydrogenase 1 family, member L1 protein-coding ALDH1L1 aldehyde dehydrogenase 1 family, member L1 O 10-formyltetrahydrofolate dehydrogenase|cytosolic 10-formyltetrahydrofolate dehydrogenase 20121230 -9606 10841 FTCD - LCHC1 HGNC:3974|MIM:606806|Ensembl:ENSG00000160282|HPRD:08430|Vega:OTTHUMG00000090488 21 21q22.3 formiminotransferase cyclodeaminase protein-coding FTCD formiminotransferase cyclodeaminase O formimidoyltransferase cyclodeaminase|formimidoyltransferase-cyclodeaminase|formiminotransferase-cyclodeaminase 20121230 -9606 10842 PPP1R17 - C7orf16|GSBS HGNC:16973|MIM:604088|Ensembl:ENSG00000106341|HPRD:06820|Vega:OTTHUMG00000128629 7 7p15 protein phosphatase 1, regulatory subunit 17 protein-coding PPP1R17 protein phosphatase 1, regulatory subunit 17 O G-substrate|protein phosphatase 1 regulatory subunit 17 20121230 -9606 10844 TUBGCP2 - GCP-2|GCP2|Grip103|SPBC97|Spc97p|h103p|hGCP2|hSpc97 HGNC:18599|Ensembl:ENSG00000130640|HPRD:18245|Vega:OTTHUMG00000019319 10 10q26.3 tubulin, gamma complex associated protein 2 protein-coding TUBGCP2 tubulin, gamma complex associated protein 2 O gamma-ring complex protein 103 kDa|gamma-tubulin complex component 2|hGrip103|spindle pole body protein Spc97 homolog 20121230 -9606 10845 CLPX - - HGNC:2088|Ensembl:ENSG00000166855|HPRD:07478|Vega:OTTHUMG00000133139 15 15q22.31 ClpX caseinolytic peptidase X homolog (E. coli) protein-coding CLPX ClpX caseinolytic peptidase X homolog (E. coli) O ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial|ClpX caseinolytic protease X homolog|energy-dependent regulator of proteolysis 20121230 -9606 10846 PDE10A - HSPDE10A HGNC:8772|MIM:610652|Ensembl:ENSG00000112541|HPRD:17828|Vega:OTTHUMG00000015986 6 6q26 phosphodiesterase 10A protein-coding PDE10A phosphodiesterase 10A O cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A|dJ416F21.1 (phosphodiesterase 10A)|phosphodiesterase 10A1 (PDE10A1) 20121230 -9606 10847 SRCAP - DOMO1|EAF1|FLHS|SWR1 HGNC:16974|MIM:611421|Ensembl:ENSG00000080603|HPRD:18103|Vega:OTTHUMG00000132393 16 16p11.2 Snf2-related CREBBP activator protein protein-coding SRCAP Snf2-related CREBBP activator protein O Snf2-related CBP activator protein|Swi2/Snf2-related ATPase homolog, domino homolog 1|domino homolog 2|helicase SRCAP 20121230 -9606 10848 PPP1R13L - IASPP|NKIP1|RAI|RAI4 HGNC:18838|MIM:607463|Ensembl:ENSG00000104881|HPRD:09195|Vega:OTTHUMG00000181784 19 19q13.32 protein phosphatase 1, regulatory subunit 13 like protein-coding PPP1R13L protein phosphatase 1, regulatory subunit 13 like O NFkB interacting protein 1|NFkB-interacting protein 1|PPP1R13B-like protein|inhibitor of ASPP protein|inhibitor of apoptosis stimulating protein of p53|protein iASPP|protein phosphatase 1, regulatory (inhibitor) subunit 13 like|relA-associated inhibitor|retinoic acid induced 4 20121230 -9606 10849 CD3EAP - ASE-1|ASE1|CAST|PAF49 HGNC:24219|MIM:107325|Ensembl:ENSG00000117877|HPRD:00125|Vega:OTTHUMG00000182120 19 19q13.3 CD3e molecule, epsilon associated protein protein-coding CD3EAP CD3e molecule, epsilon associated protein O A34.5|CD3 epsilon associated protein|CD3-epsilon-associated protein|CD3E-associated protein|CD3e antigen, epsilon polypeptide associated protein|DNA-directed RNA polymerase I subunit RPA34|RNA polymerase I-associated factor PAF49|antisense to ERCC 1|antisense to ERCC-1 protein 20121230 -9606 10850 CCL27 RP11-195F19.28-001 ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27 HGNC:10626|MIM:604833|Ensembl:ENSG00000213927|HPRD:05321|Vega:OTTHUMG00000019834 9 9p13 chemokine (C-C motif) ligand 27 protein-coding CCL27 chemokine (C-C motif) ligand 27 O C-C motif chemokine 27|CC chemokine ILC|IL-11 R-alpha-locus chemokine|IL-11 Ralpha-locus chemokine|cutaneous T-cell attracting chemokine|cutaneous T-cell-attracting chemokine|skinkine|small inducible cytokine subfamily A (Cys-Cys), member 27|small-inducible cytokine A27 20121230 -9606 10855 HPSE - HPA|HPA1|HPR1|HPSE1|HSE1 HGNC:5164|MIM:604724|Ensembl:ENSG00000173083|HPRD:05286|Vega:OTTHUMG00000130425 4 4q21.3 heparanase protein-coding HPSE heparanase O endo-glucoronidase|heparanase-1 20121230 -9606 10856 RUVBL2 CGI-46 ECP51|INO80J|REPTIN|RVB2|TIH2|TIP48|TIP49B HGNC:10475|MIM:604788|Ensembl:ENSG00000183207|HPRD:16070 19 19q13.3 RuvB-like 2 (E. coli) protein-coding RUVBL2 RuvB-like 2 (E. coli) O 48 kDa TATA box-binding protein-interacting protein|48 kDa TBP-interacting protein|51 kDa erythrocyte cytosolic protein|ECP-51|INO80 complex subunit J|RuvB (E coli homolog)-like 2|TAP54-beta|TIP60-associated protein 54-beta|erythrocyte cytosolic protein, 51-KD|repressing pontin 52|reptin52 protein|ruvB-like 2 20121230 -9606 10857 PGRMC1 - HPR6.6|MPR HGNC:16090|MIM:300435|Ensembl:ENSG00000101856|HPRD:02338|Vega:OTTHUMG00000022268 X Xq22-q24 progesterone receptor membrane component 1 protein-coding PGRMC1 progesterone receptor membrane component 1 O membrane-associated progesterone receptor component 1|progesterone binding protein 20121230 -9606 10858 CYP46A1 - CP46|CYP46 HGNC:2641|MIM:604087|Ensembl:ENSG00000036530|HPRD:04970|Vega:OTTHUMG00000171510 14 14q32.1 cytochrome P450, family 46, subfamily A, polypeptide 1 protein-coding CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1 O CH24H|cholesterol 24-hydroxylase|cytochrome P450 46A1|cytochrome P450, subfamily 46 (cholesterol 24-hydroxylase) 20121230 -9606 10859 LILRB1 XXbac-BCX85G21.4 CD85|CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7 HGNC:6605|MIM:604811|Ensembl:ENSG00000104972|HPRD:07273|Vega:OTTHUMG00000065695 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 protein-coding LILRB1 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 O CD85 antigen-like family member J|Ig-like transcript 2|immunoglobulin-like transcript 2|leukocyte Ig-like receptor-1|leukocyte immunoglobulin-like receptor subfamily B member 1|leukocyte immunoglobulin-like receptor subfamily B member 1 soluble isoform|monocyte/macrophage immunoglobulin-like receptor 7 20121230 -9606 10861 SLC26A1 - EDM4|SAT-1|SAT1 HGNC:10993|MIM:610130|Ensembl:ENSG00000145217|HPRD:15361|Vega:OTTHUMG00000160003 4 4p16.3 solute carrier family 26 (sulfate transporter), member 1 protein-coding SLC26A1 solute carrier family 26 (sulfate transporter), member 1 O sulfate anion tranporter AT1|sulfate anion transporter 1|sulfate/anion transporter SAT-1 protein 20121230 -9606 10863 ADAM28 - ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII HGNC:206|MIM:606188|Ensembl:ENSG00000042980|HPRD:08391|Vega:OTTHUMG00000163780 8 8p21.2 ADAM metallopeptidase domain 28 protein-coding ADAM28 ADAM metallopeptidase domain 28 O disintegrin and metalloproteinase domain-containing protein 28|epididymial metalloproteinase-like, disintegrin-like, and cysteine-rich protein II|metalloproteinase-like, disintegrin-like, and cysteine-rich protein-L 20121230 -9606 10864 SLC22A7 RP11-480N24.7 NLT|OAT2 HGNC:10971|MIM:604995|Ensembl:ENSG00000137204|HPRD:05409|Vega:OTTHUMG00000014726 6 6p21.1 solute carrier family 22 (organic anion transporter), member 7 protein-coding SLC22A7 solute carrier family 22 (organic anion transporter), member 7 O hOAT2|liver-specific transporter|novel liver transporter|organic anion transporter 2|solute carrier family 22 member 7 20121230 -9606 10865 ARID5A UNQ5814 MRF-1|MRF1|RP11-363D14 HGNC:17361|MIM:611583|Ensembl:ENSG00000196843|HPRD:12481|Vega:OTTHUMG00000155229 2 2q11.2 AT rich interactive domain 5A (MRF1-like) protein-coding ARID5A AT rich interactive domain 5A (MRF1-like) O ARID domain-containing protein 5A|AT-rich interactive domain-containing protein 5A|RFVG5814|modulator recognition factor 1|modulator recognition factor I 20121230 -9606 10866 HCP5 - 6S2650E|D6S2650E|P5-1 HGNC:21659|MIM:604676|HPRD:05245 6 6p21.3 HLA complex P5 (non-protein coding) miscRNA HCP5 HLA complex P5 (non-protein coding) O - 20121230 -9606 10867 TSPAN9 - NET-5|NET5|PP1057 HGNC:21640|MIM:613137|Ensembl:ENSG00000011105|HPRD:14823|Vega:OTTHUMG00000150333 12 12p13.33-p13.32 tetraspanin 9 protein-coding TSPAN9 tetraspanin 9 O new EST tetraspan 5|tetraspan NET-5|tetraspanin-9|transmembrane 4 superfamily member tetraspan NET-5|tspan-9 20121230 -9606 10868 USP20 - LSFR3A|VDU2 HGNC:12619|Ensembl:ENSG00000136878|HPRD:07505|Vega:OTTHUMG00000020793 9 9q34.11 ubiquitin specific peptidase 20 protein-coding USP20 ubiquitin specific peptidase 20 O VHL-interacting deubiquitinating enzyme 2|deubiquitinating enzyme 20|hVDU2|pVHL-interacting deubiquitinating enzyme 2|ubiquitin carboxyl-terminal hydrolase 20|ubiquitin specific protease 20|ubiquitin thioesterase 20|ubiquitin thiolesterase 20|ubiquitin-specific-processing protease 20 20121230 -9606 10869 USP19 - ZMYND9 HGNC:12617|MIM:614471|Ensembl:ENSG00000172046|HPRD:18278|Vega:OTTHUMG00000133611 3 3p21.31 ubiquitin specific peptidase 19 protein-coding USP19 ubiquitin specific peptidase 19 O deubiquitinating enzyme 19|ubiquitin carboxyl-terminal hydrolase 19|ubiquitin specific protease 19|ubiquitin thioesterase 19|ubiquitin thiolesterase 19|ubiquitin-specific-processing protease 19|zinc finger MYND domain-containing protein 9 20121230 -9606 10870 HCST UNQ587/PRO1157 DAP10|KAP10|PIK3AP HGNC:16977|MIM:604089|Ensembl:ENSG00000126264|HPRD:04971|Vega:OTTHUMG00000048132 19 19q13.1 hematopoietic cell signal transducer protein-coding HCST hematopoietic cell signal transducer O DNAX-activation protein 10|kinase assoc pro of ~10kDa|kinase assoc protein|membrane protein DAP10|phosphoinositide-3-kinase adaptor protein|transmembrane adapter protein KAP10 20121230 -9606 10871 CD300C - CLM-6|CMRF-35|CMRF-35A|CMRF35|CMRF35-A1|CMRF35A|CMRF35A1|IGSF16|LIR HGNC:19320|MIM:606786|Ensembl:ENSG00000167850|HPRD:09491|Vega:OTTHUMG00000067608 17 17q25.1 CD300c molecule protein-coding CD300C CD300c molecule O CD300 antigen-like family member C|CD300c antigen|CMRF35 antigen|CMRF35 leukocyte immunoglobulin-like receptor|CMRF35-like molecule 6|CMRF35A leukocyte immunoglobulin-like receptor|immunoglobulin superfamily member 16 20121230 -9606 10873 ME3 - NADP-ME HGNC:6985|MIM:604626|Ensembl:ENSG00000151376|HPRD:06862|Vega:OTTHUMG00000167217 11 11cen-q22.3 malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial O NADP-dependent malic enzyme, mitochondrial|malate dehydrogenase|malic enzyme, NADP+-dependent, mitochondrial|mitochondrial NADP(+)-dependent malic enzyme 3|pyruvic-malic carboxylase 20121230 -9606 10874 NMU - - HGNC:7859|MIM:605103|Ensembl:ENSG00000109255|HPRD:05485|Vega:OTTHUMG00000102161 4 4q12 neuromedin U protein-coding NMU neuromedin U O neuromedin-U 20121230 -9606 10875 FGL2 - T49|pT49 HGNC:3696|MIM:605351|Ensembl:ENSG00000127951|HPRD:16098|Vega:OTTHUMG00000130681 7 7q11.23 fibrinogen-like 2 protein-coding FGL2 fibrinogen-like 2 O fibrinogen-like protein 2|fibroleukin 20121230 -9606 10876 EDDM3A - EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA HGNC:16978|MIM:611580|Ensembl:ENSG00000181562|HPRD:13289|Vega:OTTHUMG00000029581 14 14q11.2 epididymal protein 3A protein-coding EDDM3A epididymal protein 3A O epididymal secretory protein E3 alpha|epididymal secretory protein E3-alpha|epididymis-specific 3 alpha|family with sequence similarity 12, member A|human epididymis-specific 3 alpha|human epididymis-specific protein 3-alpha 20121230 -9606 10877 CFHR4 RP4-608O15.2 CFHL4|FHR-4|FHR4 HGNC:16979|MIM:605337|Ensembl:ENSG00000134365|HPRD:05627|Vega:OTTHUMG00000036647 1 1q32 complement factor H-related 4 protein-coding CFHR4 complement factor H-related 4 O complement factor H-related protein 4 20121230 -9606 10878 CFHR3 - CFHL3|DOWN16|FHR-3|FHR3|HLF4 HGNC:16980|MIM:605336|Ensembl:ENSG00000116785|HPRD:05626|Vega:OTTHUMG00000035929 1 1q32 complement factor H-related 3 protein-coding CFHR3 complement factor H-related 3 O H factor-like 4|H factor-like protein 3|complement factor H-related protein 3 20121230 -9606 10879 SMR3B - P-B|PBII|PRL3|PROL3|SMR1B HGNC:17326|MIM:611593|Ensembl:ENSG00000171201|HPRD:18078|Vega:OTTHUMG00000129396 4 4q13.3 submaxillary gland androgen regulated protein 3B protein-coding SMR3B submaxillary gland androgen regulated protein 3B O proline rich 3|proline-rich peptide P-B|proline-rich protein 3|salivary proline-rich protein|submaxillary gland androgen regulated protein 3 homolog B|submaxillary gland androgen-regulated protein 3B 20121230 -9606 10880 ACTL7B RP11-3J11.2 Tact1 HGNC:162|MIM:604304|Ensembl:ENSG00000148156|HPRD:11977|Vega:OTTHUMG00000020462 9 9q31 actin-like 7B protein-coding ACTL7B actin-like 7B O actin-like 7-beta|actin-like protein 7B|actin-like-7-beta 20121230 -9606 10881 ACTL7A RP11-3J11.3 - HGNC:161|MIM:604303|Ensembl:ENSG00000187003|HPRD:11976|Vega:OTTHUMG00000020461 9 9q31 actin-like 7A protein-coding ACTL7A actin-like 7A O actin-like 7-alpha|actin-like protein 7A|actin-like-7-alpha 20121230 -9606 10882 C1QL1 - C1QRF|C1QTNF14|CRF HGNC:24182|MIM:611586|Ensembl:ENSG00000131094|HPRD:12712|Vega:OTTHUMG00000162944 17 17q21 complement component 1, q subcomponent-like 1 protein-coding C1QL1 complement component 1, q subcomponent-like 1 O C1q-related factor 20121230 -9606 10884 MRPS30 BM-047 MRP-S30|PAP|PDCD9|S30mt HGNC:8769|MIM:611991|Ensembl:ENSG00000112996|HPRD:17597|Vega:OTTHUMG00000096967 5 5q11 mitochondrial ribosomal protein S30 protein-coding MRPS30 mitochondrial ribosomal protein S30 O 28S ribosomal protein S30, mitochondrial|programmed cell death 9 20121230 -9606 10885 WDR3 RP4-776P7.1 DIP2|UTP12 HGNC:12755|MIM:604737|Ensembl:ENSG00000065183|HPRD:16066|Vega:OTTHUMG00000012197 1 1p12 WD repeat domain 3 protein-coding WDR3 WD repeat domain 3 O WD repeat-containing protein 3|dJ776P7.2 (WD repeat domain 3) 20121230 -9606 10886 NPFFR2 - GPR74|HLWAR77|NPFF2|NPGPR HGNC:4525|MIM:607449|Ensembl:ENSG00000056291|HPRD:16244|Vega:OTTHUMG00000129918 4 4q21 neuropeptide FF receptor 2 protein-coding NPFFR2 neuropeptide FF receptor 2 O G protein-coupled receptor 74|G-protein coupled receptor 74|G-protein coupled receptor HLWAR77|neuropeptide FF 2|neuropeptide G-protein coupled receptor 20121230 -9606 10887 PROKR1 - GPR73|GPR73a|PKR1|ZAQ HGNC:4524|MIM:607122|Ensembl:ENSG00000169618|HPRD:08452 2 2p13.1 prokineticin receptor 1 protein-coding PROKR1 prokineticin receptor 1 O G protein-coupled receptor 73|G protein-coupled receptor ZAQ|G-protein coupled receptor 73|G-protein coupled receptor ZAQ|PK-R1 20121230 -9606 10888 GPR83 - GIR|GPR72 HGNC:4523|MIM:605569|Ensembl:ENSG00000123901|HPRD:16125|Vega:OTTHUMG00000167779 11 11q21 G protein-coupled receptor 83 protein-coding GPR83 G protein-coupled receptor 83 O G protein-coupled receptor 72|G-protein coupled receptor 72|glucocorticoid induced receptor|probable G-protein coupled receptor 83 20121230 -9606 10890 RAB10 - - HGNC:9759|MIM:612672|Ensembl:ENSG00000084733|HPRD:06692|Vega:OTTHUMG00000094796 2 2p23.3 RAB10, member RAS oncogene family protein-coding RAB10 RAB10, member RAS oncogene family O GTP-binding protein RAB10|ras-related GTP-binding protein|ras-related protein Rab-10 20121230 -9606 10891 PPARGC1A - LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1 HGNC:9237|MIM:604517|Ensembl:ENSG00000109819|HPRD:05155|Vega:OTTHUMG00000097747 4 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha protein-coding PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha O L-PGC-1alpha|PGC-1-alpha|PPAR gamma coactivator variant form|PPARGC-1-alpha|ligand effect modulator-6|peroxisome proliferator-activated receptor gamma coactivator 1 alpha transcript variant B4|peroxisome proliferator-activated receptor gamma coactivator 1 alpha transcript variant B4-3ext|peroxisome proliferator-activated receptor gamma coactivator 1 alpha transcript variant B4-8a|peroxisome proliferator-activated receptor gamma coactivator 1 alpha transcript variant B5|peroxisome proliferator-activated receptor gamma coactivator 1 alpha transcript variant B5-NT|peroxisome proliferator-activated receptor gamma coactivator 1-alpha 20121230 -9606 10892 MALT1 - MLT|MLT1 HGNC:6819|MIM:604860|Ensembl:ENSG00000172175|HPRD:06892|Vega:OTTHUMG00000132761 18 18q21 mucosa associated lymphoid tissue lymphoma translocation gene 1 protein-coding MALT1 mucosa associated lymphoid tissue lymphoma translocation gene 1 O MALT associated translocation|MALT lymphoma-associated translocation|MALT-lymphoma associated translocation|caspase-like protein|mucosa-associated lymphoid tissue lymphoma translocation protein 1|paracaspase 20121230 -9606 10893 MMP24 RP4-614O4.10-001 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 HGNC:7172|MIM:604871|Ensembl:ENSG00000125966|HPRD:05338|Vega:OTTHUMG00000032330 20 20q11.2 matrix metallopeptidase 24 (membrane-inserted) protein-coding MMP24 matrix metallopeptidase 24 (membrane-inserted) O matrix metalloproteinase 24 (membrane-inserted)|matrix metalloproteinase-24|membrane-type 5 matrix metalloproteinase|membrane-type matrix metalloproteinase 5|membrane-type-5 matrix metalloproteinase 20121230 -9606 10894 LYVE1 UNQ230/PRO263 CRSBP-1|HAR|LYVE-1|XLKD1 HGNC:14687|MIM:605702|Ensembl:ENSG00000133800|HPRD:05753|Vega:OTTHUMG00000165713 11 11p15 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 O cell surface retention sequence binding protein-1|cell surface retention sequence-binding protein 1|extracellular link domain containing 1|extracellular link domain-containing 1|extracellular link domain-containing protein 1|hyaluronic acid receptor|lymphatic vessel endothelial hyaluronic acid receptor 1 20121230 -9606 10895 PPBPP2 - PPBPL2|SPBPBP HGNC:16981|MIM:611591 4 4q13.3 pro-platelet basic protein pseudogene 2 pseudo PPBPP2 pro-platelet basic protein pseudogene 2 O - 20121230 -9606 10896 OCLM - TISR HGNC:8103|MIM:604301|Ensembl:ENSG00000262180|HPRD:16054|Vega:OTTHUMG00000177601 1 1q25 oculomedin protein-coding OCLM oculomedin O trabecular meshwork inducible stretch response protein 20121230 -9606 10897 YIF1A - 54TM|FinGER7|YIF1|YIF1P HGNC:16688|MIM:611484|Ensembl:ENSG00000174851|HPRD:06755|Vega:OTTHUMG00000102079 11 11q13 Yip1 interacting factor homolog A (S. cerevisiae) protein-coding YIF1A Yip1 interacting factor homolog A (S. cerevisiae) O 54TMp|YIP1-interacting factor homolog A|Yip1p-interacting factor|protein YIF1A|putative Rab5-interacting protein|putative transmembrane protein 54TMp 20121230 -9606 10898 CPSF4 - CPSF30|NAR|NEB1 HGNC:2327|MIM:603052|Ensembl:ENSG00000160917|HPRD:04338|Vega:OTTHUMG00000154599 7 7q22.1 cleavage and polyadenylation specific factor 4, 30kDa protein-coding CPSF4 cleavage and polyadenylation specific factor 4, 30kDa O CPSF 30 kDa subunit|NS1 effector domain-binding protein 1|cleavage and polyadenylation specificity factor 30 kDa subunit|cleavage and polyadenylation specificity factor subunit 4|cleavage-polyadenylation specificity factor, 30kD|neb-1|no arches homolog|no arches-like zinc finger protein 20121230 -9606 10899 JTB RP11-422P24.4 HJTB|HSPC222|PAR|hJT HGNC:6201|MIM:604671|Ensembl:ENSG00000143543|HPRD:05240|Vega:OTTHUMG00000036590 1 1q21 jumping translocation breakpoint protein-coding JTB jumping translocation breakpoint O jumping translocation breakpoint protein|prostate androgen-regulated protein|protein JTB 20121230 -9606 10900 RUNDC3A - RAP2IP|RPIP-8|RPIP8 HGNC:16984|MIM:605448|Ensembl:ENSG00000108309|HPRD:16106|Vega:OTTHUMG00000169259 17 17q21.31 RUN domain containing 3A protein-coding RUNDC3A RUN domain containing 3A O RUN domain-containing protein 3A|RaP2 interacting protein 8|rap2-interacting protein 8 20121230 -9606 10901 DHRS4 UNQ851/PRO1800 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 HGNC:16985|MIM:611596|Ensembl:ENSG00000157326|HPRD:07484|Vega:OTTHUMG00000028777 14 14q11.2 dehydrogenase/reductase (SDR family) member 4 protein-coding DHRS4 dehydrogenase/reductase (SDR family) member 4 O NADP-dependent retinol dehydrogenase|NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase|NADPH-dependent retinol dehydrogenase/reductase|dehydrogenase/reductase (SDR family) member 4 like 2A|dehydrogenase/reductase SDR family member 4|peroxisomal short-chain alcohol dehydrogenase|short chain dehydrogenase/reductase family 25C, member 1|short chain dehydrogenase/reductase family 25C, member 2|short-chain dehydrogenase/reductase family member 4 20121230 -9606 10902 BRD8 - SMAP|SMAP2|p120 HGNC:19874|MIM:602848|Ensembl:ENSG00000112983|HPRD:04166|Vega:OTTHUMG00000129204 5 5q31 bromodomain containing 8 protein-coding BRD8 bromodomain containing 8 O bromodomain-containing protein 8|skeletal muscle abundant protein 2|thyroid hormone receptor coactivating protein of 120 kDa|trCP120 20121230 -9606 10903 MTMR11 - CRA|RP11-212K13.1 HGNC:24307|Ensembl:ENSG00000014914|HPRD:16748|Vega:OTTHUMG00000012207 1 1q12-q21 myotubularin related protein 11 protein-coding MTMR11 myotubularin related protein 11 O cisplatin resistance associated|cisplatin resistance-associated protein|hCRA|myotubularin-related protein 11 20121230 -9606 10904 BLCAP RP11-425M5.2 BC10 HGNC:1055|MIM:613110|Ensembl:ENSG00000166619|HPRD:16552|Vega:OTTHUMG00000032419 20 20q11.23 bladder cancer associated protein protein-coding BLCAP bladder cancer associated protein O bladder cancer 10 kDa protein|bladder cancer related protein (10kD)|bladder cancer-associated protein 20121230 -9606 10905 MAN1A2 RP4-675C20.1 MAN1B HGNC:6822|MIM:604345|Ensembl:ENSG00000198162|HPRD:05067|Vega:OTTHUMG00000012149 1 1p13 mannosidase, alpha, class 1A, member 2 protein-coding MAN1A2 mannosidase, alpha, class 1A, member 2 O alpha-1,2-mannosidase IB|alpha1,2-mannosidase|mannosyl-oligosaccharide 1,2-alpha-mannosidase IB|processing alpha-1,2-mannosidase IB 20121230 -9606 10906 TRAFD1 - FLN29 HGNC:24808|MIM:613197|Ensembl:ENSG00000135148|HPRD:10994|Vega:OTTHUMG00000169640 12 12q TRAF-type zinc finger domain containing 1 protein-coding TRAFD1 TRAF-type zinc finger domain containing 1 O FLN29 gene product|TRAF-type zinc finger domain-containing protein 1 20121230 -9606 10907 TXNL4A - DIB1|DIM1|HsT161|TXNL4|U5-15kD HGNC:30551|MIM:611595|Ensembl:ENSG00000141759|HPRD:18252|Vega:OTTHUMG00000180376 18 18q23 thioredoxin-like 4A protein-coding TXNL4A thioredoxin-like 4A O DIM1 protein homolog|spliceosomal U5 snRNP-specific 15 kDa protein|thioredoxin-like 4|thioredoxin-like U5 snRNP protein U5-15kD|thioredoxin-like protein 4A 20121230 -9606 10908 PNPLA6 - NTE|NTEMND|SPG39|iPLA2delta|sws HGNC:16268|MIM:603197|Ensembl:ENSG00000032444|HPRD:04432 19 19p13.2 patatin-like phospholipase domain containing 6 protein-coding PNPLA6 patatin-like phospholipase domain containing 6 O neuropathy target esterase|patatin-like phospholipase domain-containing protein 6 20121230 -9606 10910 SUGT1 RP11-93H24.2 SGT1 HGNC:16987|MIM:604098|Ensembl:ENSG00000165416|Vega:OTTHUMG00000016977 13 13q14.3 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) protein-coding SUGT1 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) O SGT1B protein|putative 40-6-3 protein|suppressor of G2 allele of SKP1 homolog|suppressor of G2 allele of SKP1, S. cerevisiae, homolog of 20121230 -9606 10911 UTS2 UNQ525/PRO1068 PRO1068|U-II|UCN2|UII HGNC:12636|MIM:604097|Ensembl:ENSG00000049247|HPRD:04976|Vega:OTTHUMG00000001218 1 1p36 urotensin 2 protein-coding UTS2 urotensin 2 O urotensin II|urotensin-2 20121230 -9606 10912 GADD45G RP11-260L6.1 CR6|DDIT2|GADD45gamma|GRP17 HGNC:4097|MIM:604949|Ensembl:ENSG00000130222|HPRD:05383|Vega:OTTHUMG00000020187 9 9q22.1-q22.2 growth arrest and DNA-damage-inducible, gamma protein-coding GADD45G growth arrest and DNA-damage-inducible, gamma O DDIT-2|DNA damage-inducible transcript 2 protein|GADD45-gamma|cytokine-responsive protein CR6|gadd-related protein, 17 kD|growth arrest and DNA damage-inducible protein GADD45 gamma 20121230 -9606 10913 EDAR - DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 HGNC:2895|MIM:604095|Ensembl:ENSG00000135960|HPRD:04974|Vega:OTTHUMG00000130982 2 2q13 ectodysplasin A receptor protein-coding EDAR ectodysplasin A receptor O EDA-A1 receptor|anhidrotic ectodysplasin receptor 1|downless homolog|downless, mouse, homolog of|ectodermal dysplasia receptor|ectodysplasin 1, anhidrotic receptor|ectodysplasin-A receptor|tumor necrosis factor receptor superfamily member EDAR 20121230 -9606 10914 PAPOLA - PAP HGNC:14981|MIM:605553|Ensembl:ENSG00000090060|HPRD:10407|Vega:OTTHUMG00000171441 14 14q32.31 poly(A) polymerase alpha protein-coding PAPOLA poly(A) polymerase alpha O PAP-alpha|polynucleotide adenylyltransferase alpha 20121230 -9606 10915 TCERG1 - CA150|TAF2S|Urn1 HGNC:15630|MIM:605409|Ensembl:ENSG00000113649|HPRD:10393|Vega:OTTHUMG00000129683 5 5q31 transcription elongation regulator 1 protein-coding TCERG1 transcription elongation regulator 1 O TATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kD|TATA box-binding protein-associated factor 2S|co-activator of 150 kDa|transcription factor CA150 20121230 -9606 10916 MAGED2 RP1-14O9.1 11B6|BCG1|HCA10|JCL-1|MAGE-D2|MAGED HGNC:16353|MIM:300470|Ensembl:ENSG00000102316|HPRD:06630|Vega:OTTHUMG00000021638 X Xp11.2 melanoma antigen family D, 2 protein-coding MAGED2 melanoma antigen family D, 2 O BCG-1|MAGE-D2 antigen|breast cancer associated gene 1|breast cancer-associated gene 1 protein|hepatocellular carcinoma associated protein|hepatocellular carcinoma-associated protein HCA10|hepatocellular carcinoma-associated protein JCL-1|melanoma-associated antigen D2 20121230 -9606 10917 BTNL3 UNQ744/PRO1472 BTNLR HGNC:1143|MIM:606192|Ensembl:ENSG00000168903|HPRD:08393|Vega:OTTHUMG00000162091 5 5q35.3 butyrophilin-like 3 protein-coding BTNL3 butyrophilin-like 3 O butyrophilin-like protein 3|butyrophilin-like receptor 20121230 -9606 10919 EHMT2 DAAP-66K18.3 BAT8|C6orf30|G9A|GAT8|KMT1C|NG36 HGNC:14129|MIM:604599|Ensembl:ENSG00000204371|HPRD:06854|Vega:OTTHUMG00000031180 6 6p21.31 euchromatic histone-lysine N-methyltransferase 2 protein-coding EHMT2 euchromatic histone-lysine N-methyltransferase 2 O G9A histone methyltransferase|H3-K9-HMTase 3|HLA-B associated transcript 8|HLA-B-associated transcript 8|ankyrin repeat-containing protein|histone H3-K9 methyltransferase 3|histone-lysine N-methyltransferase EHMT2|histone-lysine N-methyltransferase, H3 lysine-9 specific 3|lysine N-methyltransferase 1C|protein G9a 20121230 -9606 10920 COPS8 - COP9|CSN8|SGN8 HGNC:24335|Ensembl:ENSG00000198612|HPRD:16737|Vega:OTTHUMG00000133297 2 2q37.3 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) protein-coding COPS8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) O COP9 homolog|COP9 signalosome complex subunit 8|JAB1-containing signalosome subunit 8|hCOP9|signalosome subunit 8 20121230 -9606 10921 RNPS1 - E5.1 HGNC:10080|MIM:606447|Ensembl:ENSG00000205937|HPRD:07341|Vega:OTTHUMG00000128828 16 16p13.3 RNA binding protein S1, serine-rich domain protein-coding RNPS1 RNA binding protein S1, serine-rich domain O RNA-binding protein S1, serine-rich domain|RNA-binding protein with serine-rich domain 1|SR protein|SR-related protein LDC2 20121230 -9606 10922 FASTK - FAST HGNC:24676|MIM:606965|Ensembl:ENSG00000164896|HPRD:07368|Vega:OTTHUMG00000158694 7 7q35 Fas-activated serine/threonine kinase protein-coding FASTK Fas-activated serine/threonine kinase O FAST kinase|fas-activated serine/threonine kinase 20121230 -9606 10923 SUB1 - P15|PC4|p14 HGNC:19985|MIM:600503|Ensembl:ENSG00000113387|HPRD:02737|Vega:OTTHUMG00000131071 5 5p13.3 SUB1 homolog (S. cerevisiae) protein-coding SUB1 SUB1 homolog (S. cerevisiae) O activated RNA polymerase II transcription cofactor 4|activated RNA polymerase II transcriptional coactivator p15|positive cofactor 4 20121230 -9606 10924 SMPDL3A - ASM3A|ASML3a|yR36GH4.1 HGNC:17389|MIM:610728|Ensembl:ENSG00000172594|HPRD:10244|Vega:OTTHUMG00000015490 6 6q22.31 sphingomyelin phosphodiesterase, acid-like 3A protein-coding SMPDL3A sphingomyelin phosphodiesterase, acid-like 3A O 0610010C24Rik|ASM-like phosphodiesterase 3a|acid sphingomyelinase-like phosphodiesterase 3a 20121230 -9606 10926 DBF4 - ASK|CHIF|DBF4A|ZDBF1 HGNC:17364|MIM:604281|Ensembl:ENSG00000006634|HPRD:10371|Vega:OTTHUMG00000131034 7 7q21.3 DBF4 homolog (S. cerevisiae) protein-coding DBF4 DBF4 homolog (S. cerevisiae) O DBF4-type zinc finger-containing protein 1|activator of S phase kinase|chiffon homolog A|protein DBF4 homolog A|zinc finger, DBF-type containing 1 20121230 -9606 10927 SPIN1 - SPIN HGNC:11243|MIM:609936|Ensembl:ENSG00000106723|HPRD:18096|Vega:OTTHUMG00000020168 9 9q22.1 spindlin 1 protein-coding SPIN1 spindlin 1 O ovarian cancer-related protein|spindlin-1 20121230 -9606 10928 RALBP1 - RIP1|RLIP1|RLIP76 HGNC:9841|MIM:605801|Ensembl:ENSG00000017797|HPRD:09013|Vega:OTTHUMG00000131596 18 18p11.3 ralA binding protein 1 protein-coding RALBP1 ralA binding protein 1 O 76 kDa Ral-interacting protein|DNP-SG ATPase|dinitrophenyl S-glutathione ATPase|ral-interacting protein 1|ralA-binding protein 1 20121230 -9606 10929 SRSF8 - SFRS2B|SRP46 HGNC:16988|MIM:603269|HPRD:04466 11 11q22 serine/arginine-rich splicing factor 8 protein-coding SRSF8 serine/arginine-rich splicing factor 8 O SR splicing factor 8|pre-mRNA-splicing factor SRP46|splicing factor SRp46|splicing factor, arginine/serine-rich 2B|splicing factor, arginine/serine-rich, 46kD 20121230 -9606 10930 APOBEC2 - ARCD1|ARP1 HGNC:605|MIM:604797|Ensembl:ENSG00000124701|HPRD:07268|Vega:OTTHUMG00000014670 6 6p21 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 protein-coding APOBEC2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 O apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2|probable C->U-editing enzyme APOBEC-2 20121230 -9606 10933 MORF4L1 FWP006 Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 HGNC:16989|MIM:607303|Ensembl:ENSG00000185787|HPRD:09532|Vega:OTTHUMG00000143865 15 15q24 mortality factor 4 like 1 protein-coding MORF4L1 mortality factor 4 like 1 O Esa1p-associated factor 3 homolog|MORF-related gene 15 protein|MORF-related gene on chromosome 15|mortality factor 4-like protein 1|protein MSL3-1|transcription factor-like protein MRG15 20121230 -9606 10934 MORF4 - CSR|CSRB|SEN|SEN1 HGNC:15773|MIM:116960|HPRD:15916 4 4q34.1 mortality factor 4 pseudo MORF4 mortality factor 4 O - 20121230 -9606 10935 PRDX3 - AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III HGNC:9354|MIM:604769|Ensembl:ENSG00000165672|HPRD:05305|Vega:OTTHUMG00000019146 10 10q25-q26 peroxiredoxin 3 protein-coding PRDX3 peroxiredoxin 3 O antioxidant protein 1|peroxiredoxin III|peroxiredoxin-3|protein MER5 homolog|thioredoxin-dependent peroxide reductase, mitochondrial 20121230 -9606 10936 GPR75 - GPRchr2|WI31133 HGNC:4526|MIM:606704|Ensembl:ENSG00000119737|HPRD:09462|Vega:OTTHUMG00000129280 2 2p16 G protein-coupled receptor 75 protein-coding GPR75 G protein-coupled receptor 75 O probable G-protein coupled receptor 75 20121230 -9606 10938 EHD1 CDABP0131 H-PAST|HPAST1|PAST|PAST1 HGNC:3242|MIM:605888|Ensembl:ENSG00000110047|HPRD:09325|Vega:OTTHUMG00000066832 11 11q13 EH-domain containing 1 protein-coding EHD1 EH-domain containing 1 O EH domain-containing protein 1|PAST homolog 1|testilin 20121230 -9606 10939 AFG3L2 - SCA28|SPAX5 HGNC:315|MIM:604581|Ensembl:ENSG00000141385|HPRD:05205|Vega:OTTHUMG00000131695 18 18p11 AFG3 ATPase family member 3-like 2 (S. cerevisiae) protein-coding AFG3L2 AFG3 ATPase family member 3-like 2 (S. cerevisiae) O AFG3 ATPase family gene 3-like 2|AFG3-like protein 2|ATPase family gene 3, yeast|paraplegin-like protein 20121230 -9606 10940 POP1 - - HGNC:30129|MIM:602486|Ensembl:ENSG00000104356|HPRD:03923|Vega:OTTHUMG00000164635 8 8q22.1 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) protein-coding POP1 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) O hPOP1|processing of precursors 1|ribonucleases P/MRP protein subunit POP1 20121230 -9606 10941 UGT2A1 - - HGNC:12542|MIM:604716|Ensembl:ENSG00000173610|HPRD:05279|Vega:OTTHUMG00000129398 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus protein-coding UGT2A1 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus O UDP glycosyltransferase 2 family, polypeptide A1|UDP-glucuronosyltransferase 2A1|UDPGT 2A1 20121230 -9606 10942 PRSS21 UNQ266/PRO303 ESP-1|ESP1|TEST1|TESTISIN HGNC:9485|MIM:608159|Ensembl:ENSG00000007038|HPRD:07082|Vega:OTTHUMG00000128931 16 16p13.3 protease, serine, 21 (testisin) protein-coding PRSS21 protease, serine, 21 (testisin) O eosinophil serine protease 1|serine protease from eosinophils|testisin 20121230 -9606 10943 MSL3 - MSL3L1 HGNC:7370|MIM:300609|Ensembl:ENSG00000005302|HPRD:05344|Vega:OTTHUMG00000021132 X Xp22.3 male-specific lethal 3 homolog (Drosophila) protein-coding MSL3 male-specific lethal 3 homolog (Drosophila) O MSL3-like 1|male-specific lethal 3 homolog|male-specific lethal-3 protein-like 1 20121230 -9606 10944 C11orf58 - IMAGE145052|SMAP HGNC:16990|Ensembl:ENSG00000110696|HPRD:18069|Vega:OTTHUMG00000165910 11 11p15.1 chromosome 11 open reading frame 58 protein-coding C11orf58 chromosome 11 open reading frame 58 O small acidic protein 20121230 -9606 10945 KDELR1 - ERD2|ERD2.1|HDEL|PM23 HGNC:6304|MIM:131235|Ensembl:ENSG00000105438|HPRD:00569 19 19q13.3 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 protein-coding KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 O ER lumen protein retaining receptor 1|KDEL endoplasmic reticulum protein retention receptor 1|KDEL receptor 1|putative MAPK-activating protein PM23 20121230 -9606 10946 SF3A3 - PRP9|PRPF9|SAP61|SF3a60 HGNC:10767|MIM:605596|Ensembl:ENSG00000183431|HPRD:10411|Vega:OTTHUMG00000004438 1 1p34.3 splicing factor 3a, subunit 3, 60kDa protein-coding SF3A3 splicing factor 3a, subunit 3, 60kDa O SAP 61|pre-mRNA splicing factor SF3a (60kD)|spliceosome associated protein 61|spliceosome-associated protein 61|splicing factor 3A subunit 3 20121230 -9606 10947 AP3M2 - AP47B|CLA20|P47B HGNC:570|MIM:610469|Ensembl:ENSG00000070718|HPRD:09801|Vega:OTTHUMG00000164060 8 8p11.2 adaptor-related protein complex 3, mu 2 subunit protein-coding AP3M2 adaptor-related protein complex 3, mu 2 subunit O AP-3 complex subunit mu-2|HA1 47 kDa subunit homolog 2|HA1 47kDA subunit homolog 2|adapter-related protein complex 3 mu-2 subunit|clathrin assembly protein assembly protein complex 1 medium chain homolog 2|clathrin coat assembly protein AP47 homolog 2|clathrin coat-associated protein AP47 homolog 2|clathrin-associated protein AP47 homolog 2|golgi adaptor AP-1 47 kDA protein homolog 2|mu3B-adaptin 20121230 -9606 10948 STARD3 - CAB1|MLN64|es64 HGNC:17579|MIM:607048|Ensembl:ENSG00000131748|HPRD:06132|Vega:OTTHUMG00000133213 17 17q11-q12 StAR-related lipid transfer (START) domain containing 3 protein-coding STARD3 StAR-related lipid transfer (START) domain containing 3 O MLN 64|START domain-containing protein 3|metastatic lymph node gene 64 protein|metastatic lymph node protein 64|stAR-related lipid transfer protein 3|steroidogenic acute regulatory protein related 20121230 -9606 10949 HNRNPA0 - HNRPA0 HGNC:5030|MIM:609409|Ensembl:ENSG00000177733|HPRD:17112|Vega:OTTHUMG00000129156 5 5q31 heterogeneous nuclear ribonucleoprotein A0 protein-coding HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 O hnRNA binding protein|hnRNP A0 20121230 -9606 10950 BTG3 - ANA|TOB5|TOB55|TOFA HGNC:1132|MIM:605674|Ensembl:ENSG00000154640|HPRD:10415|Vega:OTTHUMG00000074501 21 21q21.1 BTG family, member 3 protein-coding BTG3 BTG family, member 3 O B-cell translocation gene 3|abundant in neuroepithelium area protein|protein BTG3|protein Tob5 20121230 -9606 10951 CBX1 - CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta HGNC:1551|MIM:604511|Ensembl:ENSG00000108468|HPRD:05149|Vega:OTTHUMG00000150417 17 17q21.32 chromobox homolog 1 protein-coding CBX1 chromobox homolog 1 O HP1 beta homolog|chromobox homolog 1 (HP1 beta homolog Drosophila )|chromobox protein homolog 1|heterochromatin protein 1 homolog beta|heterochromatin protein 1-beta|heterochromatin protein p25 beta|modifier 1 protein 20121230 -9606 10952 SEC61B - - HGNC:16993|MIM:609214|Ensembl:ENSG00000106803|HPRD:06715|Vega:OTTHUMG00000020354 9 9q22.32-q31.3 Sec61 beta subunit protein-coding SEC61B Sec61 beta subunit O Sec61 complex, beta subunit|protein translocation complex beta|protein transport protein SEC61 beta subunit|protein transport protein Sec61 subunit beta 20121230 -9606 10953 TOMM34 - HTOM34P|TOM34|URCC3 HGNC:15746|Ensembl:ENSG00000025772|HPRD:11641|Vega:OTTHUMG00000032552 20 - translocase of outer mitochondrial membrane 34 protein-coding TOMM34 translocase of outer mitochondrial membrane 34 O hTom34|mitochondrial import receptor subunit TOM34|outer mitochondrial membrane translocase (34kD)|translocase of outer membrane 34 kDa subunit 20121230 -9606 10954 PDIA5 - PDIR HGNC:24811|Ensembl:ENSG00000065485|HPRD:08334|Vega:OTTHUMG00000159558 3 3q21.1 protein disulfide isomerase family A, member 5 protein-coding PDIA5 protein disulfide isomerase family A, member 5 O protein disulfide isomerase-associated 5|protein disulfide isomerase-related protein|protein disulfide-isomerase A5 20121230 -9606 10955 SERINC3 RP1-179M20.2 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 HGNC:11699|MIM:607165|Ensembl:ENSG00000132824|HPRD:06201|Vega:OTTHUMG00000033087 20 20q13.12 serine incorporator 3 protein-coding SERINC3 serine incorporator 3 O placental transmembrane protein (mouse testicular tumor differentially expressed)|transmembrane protein SBBI99|tumor differentially expressed 1|tumor differentially expressed protein 1|tumour differentially expressed 1 20121230 -9606 10956 OS9 - ERLEC2|OS-9 HGNC:16994|MIM:609677|Ensembl:ENSG00000135506|HPRD:17804|Vega:OTTHUMG00000170284 12 12q13 osteosarcoma amplified 9, endoplasmic reticulum lectin protein-coding OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin O amplified in osteosarcoma 9|endoplasmic reticulum lectin 2|erlectin 2|osteosarcoma amplified 9, endoplasmic reticulum associated protein|protein OS-9 20121230 -9606 10957 PNRC1 RP11-63L7.5 B4-2|PNAS-145|PROL2|PRR2 HGNC:17278|MIM:606714|Ensembl:ENSG00000146278|HPRD:08412|Vega:OTTHUMG00000015191 6 6q15 proline-rich nuclear receptor coactivator 1 protein-coding PNRC1 proline-rich nuclear receptor coactivator 1 O proline rich 2 protein|proline-rich polypeptide 2|proline-rich protein 2|proline-rich protein with nuclear targeting signal|protein B4-2 20121230 -9606 10959 TMED2 - P24A|RNP24|p24 HGNC:16996|Ensembl:ENSG00000086598|HPRD:17984|Vega:OTTHUMG00000168694 12 12q24.31 transmembrane emp24 domain trafficking protein 2 protein-coding TMED2 transmembrane emp24 domain trafficking protein 2 O coated vesicle membrane protein|membrane protein p24A|p24 family protein beta-1|p24beta1|transmembrane emp24 domain-containing protein 2 20121230 -9606 10960 LMAN2 - C5orf8|GP36B|VIP36 HGNC:16986|MIM:609551|Ensembl:ENSG00000169223|HPRD:17285|Vega:OTTHUMG00000130860 5 5q35.3 lectin, mannose-binding 2 protein-coding LMAN2 lectin, mannose-binding 2 O glycoprotein GP36b|vesicular integral protein of 36 kDa|vesicular integral-membrane protein 36|vesicular integral-membrane protein VIP36 20121230 -9606 10961 ERP29 - C12orf8|ERp28|ERp31|PDI-DB|PDIA9 HGNC:13799|MIM:602287|Ensembl:ENSG00000089248|HPRD:03794|Vega:OTTHUMG00000169637 12 12q24.13 endoplasmic reticulum protein 29 protein-coding ERP29 endoplasmic reticulum protein 29 O endoplasmic reticulum lumenal protein ERp28|endoplasmic reticulum resident protein 28|endoplasmic reticulum resident protein 29|endoplasmic reticulum resident protein 31|protein disulfide isomerase family A, member 9 20121230 -9606 10962 MLLT11 - AF1Q|RP11-316M1.10 HGNC:16997|MIM:604684|Ensembl:ENSG00000213190|HPRD:05251|Vega:OTTHUMG00000035160 1 1q21 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 protein-coding MLLT11 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 O ALL1 fused gene from chromosome 1q|ALL1-fused gene from chromosome 1q|protein AF1q 20121230 -9606 10963 STIP1 - HOP|IEF-SSP-3521|P60|STI1|STI1L HGNC:11387|MIM:605063|Ensembl:ENSG00000168439|HPRD:05454|Vega:OTTHUMG00000167789 11 11q13 stress-induced-phosphoprotein 1 protein-coding STIP1 stress-induced-phosphoprotein 1 O Hsp70/Hsp90-organizing protein|NY-REN-11 antigen|hsc70/Hsp90-organizing protein|renal carcinoma antigen NY-REN-11|transformation-sensitive protein IEF SSP 3521 20121230 -9606 10964 IFI44L GS3686 C1orf29 HGNC:17817|MIM:613975|Ensembl:ENSG00000137959|HPRD:13728|Vega:OTTHUMG00000009724 1 1p31.1 interferon-induced protein 44-like protein-coding IFI44L interferon-induced protein 44-like O - 20121230 -9606 10965 ACOT2 - CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128 HGNC:18431|MIM:609972|Ensembl:ENSG00000119673|HPRD:10173|Vega:OTTHUMG00000171608 14 14q24.3 acyl-CoA thioesterase 2 protein-coding ACOT2 acyl-CoA thioesterase 2 O acyl-coenzyme A thioester hydrolase 2a|acyl-coenzyme A thioesterase 2, mitochondrial|long-chain acyl-CoA thioesterase 2|mitochondrial acyl-CoA thioesterase 1|peroxisomal long-chain acyl-coA thioesterase 2 20121230 -9606 10966 RAB40B - RAR|SEC4L HGNC:18284|Ensembl:ENSG00000141542|HPRD:11472|Vega:OTTHUMG00000177806 17 17q25.3 RAB40B, member RAS oncogene family protein-coding RAB40B RAB40B, member RAS oncogene family O GTP-binding protein homologous to Saccharomyces cerevisiae SEC4|SOCS box-containing protein RAR|protein Rar|ras-related protein Rab-40B 20121230 -9606 10969 EBNA1BP2 RP5-1034F7.2 EBP2|NOBP|P40 HGNC:15531|MIM:614443|Ensembl:ENSG00000117395|HPRD:16849|Vega:OTTHUMG00000007284 1 1p35-p33 EBNA1 binding protein 2 protein-coding EBNA1BP2 EBNA1 binding protein 2 O EBNA1-binding protein 2|nuclear FGF3 binding protein|nucleolar protein p40|nucleolar protein p40; homolog of yeast EBNA1-binding protein|probable rRNA-processing protein EBP2 20121230 -9606 10970 CKAP4 - CLIMP-63|ERGIC-63|p63 HGNC:16991|Ensembl:ENSG00000136026|HPRD:16717|Vega:OTTHUMG00000170085 12 12q23.3 cytoskeleton-associated protein 4 protein-coding CKAP4 cytoskeleton-associated protein 4 O 63 kDa membrane protein|63-kDa cytoskeleton-linking membrane protein|transmembrane protein (63kD), endoplasmic reticulum/Golgi intermediate compartment|type-II transmembrane protein p63 20121230 -9606 10971 YWHAQ - 14-3-3|1C5|HS1 HGNC:12854|MIM:609009|Ensembl:ENSG00000134308|HPRD:00886|Vega:OTTHUMG00000013848 2 2p25.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide protein-coding YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide O 14-3-3 protein T-cell|14-3-3 protein tau|14-3-3 protein theta|protein tau 20121230 -9606 10972 TMED10 - P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23 HGNC:16998|MIM:605406|Ensembl:ENSG00000170348|HPRD:12013|Vega:OTTHUMG00000171771 14 14q24.3 transmembrane emp24-like trafficking protein 10 (yeast) protein-coding TMED10 transmembrane emp24-like trafficking protein 10 (yeast) O 21 kDa transmembrane trafficking protein|21 kDa transmembrane-trafficking protein|p24 family protein delta-1|p24delta|p24delta1|transmembrane emp24 domain-containing protein 10|transmembrane protein Tmp21 20121230 -9606 10973 ASCC3 RP1-121G13.4 ASC1p200|DJ467N11.1|HELIC1|RNAH|dJ121G13.4|p200 HGNC:18697|MIM:614217|Ensembl:ENSG00000112249|HPRD:09980|HPRD:16805|Vega:OTTHUMG00000015279 6 6q16 activating signal cointegrator 1 complex subunit 3 protein-coding ASCC3 activating signal cointegrator 1 complex subunit 3 O ASC-1 complex subunit P200|B630009I04Rik|RNA helicase family|helicase, ATP binding 1|trip4 complex subunit p200 20121230 -9606 10974 C10orf116 RP11-96C23.4 APM2|apM-2 HGNC:24043|Ensembl:ENSG00000148671|HPRD:16575|Vega:OTTHUMG00000018668 10 10q23.2 chromosome 10 open reading frame 116 protein-coding C10orf116 chromosome 10 open reading frame 116 O adipose most abundant gene transcript 2 protein|adipose specific 2 20121230 -9606 10975 UQCR11 - 0710008D09Rik|QCR10|UQCR HGNC:30862|MIM:609711|Ensembl:ENSG00000127540|Ensembl:ENSG00000267059|HPRD:15628|Vega:OTTHUMG00000180084 19 19p13.3 ubiquinol-cytochrome c reductase, complex III subunit XI protein-coding UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI O complex III subunit 10|complex III subunit XI|cytochrome b-c1 complex subunit 10|ubiquinol cytochrome c reductase, 6.4kDa subunit|ubiquinol-cytochrome c reductase complex 6.4 kDa protein|ubiquinol-cytochrome c reductase, 6.4kDa subunit 20121230 -9606 10978 CLP1 - HEAB|hClp1 HGNC:16999|MIM:608757|Ensembl:ENSG00000172409|HPRD:16382|Vega:OTTHUMG00000167146 11 11q12 cleavage and polyadenylation factor I subunit 1 protein-coding CLP1 cleavage and polyadenylation factor I subunit 1 O ATP/GTP-binding protein|CLP1, cleavage and polyadenylation factor I subunit, homolog|homolog of yeast CFIA subunit Clp1p|polynucleotide kinase Clp1|polyribonucleotide 5'-hydroxyl-kinase Clp1|pre-mRNA cleavage complex II protein Clp1 20121230 -9606 10979 FERMT2 - KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 HGNC:15767|MIM:607746|Ensembl:ENSG00000073712|HPRD:06374|Vega:OTTHUMG00000140309 14 14q22.1 fermitin family member 2 protein-coding FERMT2 fermitin family member 2 O PH domain-containing family C member 1|fermitin family homolog 2|kindlin 2|kindlin-2|mitogen inducible gene 2 protein|mitogen-inducible gene 2 protein|pleckstrin homology domain containing, family C (with FERM domain) member 1|pleckstrin homology domain containing, family C member 1|pleckstrin homology domain-containing family C member 1 20121230 -9606 10980 COPS6 - CSN6|MOV34-34KD HGNC:21749|MIM:614729|Ensembl:ENSG00000168090|HPRD:16735|Vega:OTTHUMG00000154632 7 7q22.1 COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) protein-coding COPS6 COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) O COP9 signalosome complex subunit 6|COP9 subunit 6 (MOV34 homolog, 34 kD)|H_NH0506M12.12|JAB1-containing signalosome subunit 6|MOV34 homolog, 34 kD|SGN6|hVIP|signalosome subunit 6|vpr-interacting protein 20121230 -9606 10981 RAB32 - - HGNC:9772|MIM:612906|Ensembl:ENSG00000118508|HPRD:06700|Vega:OTTHUMG00000015755 6 6q24.3 RAB32, member RAS oncogene family protein-coding RAB32 RAB32, member RAS oncogene family O ras-related protein Rab-32 20121230 -9606 10982 MAPRE2 - EB1|EB2|RP1 HGNC:6891|MIM:605789|Ensembl:ENSG00000166974|HPRD:16157|Vega:OTTHUMG00000132551 18 18q12.1 microtubule-associated protein, RP/EB family, member 2 protein-coding MAPRE2 microtubule-associated protein, RP/EB family, member 2 O APC-binding protein EB1|APC-binding protein EB2|T-cell activation protein, EB1 family|end-binding protein 2|microtubule-associated protein RP/EB family member 2 20121230 -9606 10983 CCNI - CYC1|CYI HGNC:1595|Ensembl:ENSG00000118816|HPRD:16690|Vega:OTTHUMG00000130106 4 4q21.1 cyclin I protein-coding CCNI cyclin I O cyclin ITI|cyclin-I 20121230 -9606 10984 KCNQ1OT1 - KCNQ1-AS2|KCNQ10T1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 HGNC:6295|MIM:604115 11 11p15 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) miscRNA KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) O - 20121230 -9606 10985 GCN1L1 - GCN1|GCN1L|PRIC295 HGNC:4199|MIM:605614|Ensembl:ENSG00000089154|HPRD:16127|Vega:OTTHUMG00000169338 12 12q24.2 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein-coding GCN1L1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) O GCN1 (general control of amino-acid synthesis 1, yeast)-like 1|GCN1-like protein 1|hsGCN1|peroxisome proliferator activated receptor interacting complex protein|translational activator GCN1 20121230 -9606 10986 IGAD1 - - HGNC:5459|MIM:137100 6 6p21.3 immunoglobulin A (IgA) deficiency susceptibility 1 unknown IGAD1 immunoglobulin A (IgA) deficiency susceptibility 1 O - 20120622 -9606 10987 COPS5 - CSN5|JAB1|MOV-34|SGN5 HGNC:2240|MIM:604850|Ensembl:ENSG00000121022|HPRD:06888|Vega:OTTHUMG00000164563 8 8q13.1 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) protein-coding COPS5 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) O 38 kDa Mov34 homolog|COP9 signalosome complex subunit 5|jun activation domain-binding protein 1|signalosome subunit 5 20121230 -9606 10988 METAP2 - MAP2|MNPEP|p67|p67eIF2 HGNC:16672|MIM:601870|Ensembl:ENSG00000111142|HPRD:03522|Vega:OTTHUMG00000170280 12 12q22 methionyl aminopeptidase 2 protein-coding METAP2 methionyl aminopeptidase 2 O MAP 2|eIF-2-associated p67 homolog|initiation factor 2-associated 67 kDa glycoprotein|metAP 2|methionine aminopeptidase 2|peptidase M 2 20121230 -9606 10989 IMMT PIG4 HMP|MINOS2|P87|P87/89|P89|PIG52 HGNC:6047|MIM:600378|Ensembl:ENSG00000132305|HPRD:02658|Vega:OTTHUMG00000153170 2 2p11.2|2 inner membrane protein, mitochondrial protein-coding IMMT inner membrane protein, mitochondrial O cell proliferation-inducing gene 4/52 protein|cell proliferation-inducing protein 52|mitochondrial inner membrane organizing system 2|mitochondrial inner membrane protein|mitofilin|motor protein|proliferation-inducing gene 4 20121230 -9606 10990 LILRB5 XXbac-BCX105G6.10-005 CD85C|LIR-8|LIR8 HGNC:6609|MIM:604814|Ensembl:ENSG00000105609|HPRD:11993|Vega:OTTHUMG00000066636 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 protein-coding LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 O CD85 antigen-like family member C|leukocyte immunoglobulin-like receptor 8|leukocyte immunoglobulin-like receptor subfamily B member 5 20121230 -9606 10991 SLC38A3 - G17|NAT1|SN1 HGNC:18044|MIM:604437|HPRD:11980 3 3p21.3 solute carrier family 38, member 3 protein-coding SLC38A3 solute carrier family 38, member 3 O N-system amino acid transporter 1|Na(+)-coupled neutral amino acid transporter 3|sodium-coupled neutral amino acid transporter 3|system N amino acid transporter 1|system N1 Na+ and H+-coupled glutamine transporter 20121230 -9606 10992 SF3B2 - Cus1|SAP145|SF3B145|SF3b1|SF3b150 HGNC:10769|MIM:605591|Ensembl:ENSG00000087365|HPRD:10410|Vega:OTTHUMG00000166751 11 11q13.1 splicing factor 3b, subunit 2, 145kDa protein-coding SF3B2 splicing factor 3b, subunit 2, 145kDa O SAP 145|pre-mRNA splicing factor SF3b 145 kDa subunit|pre-mRNA-splicing factor SF3b 145 kDa subunit|spliceosome associated protein 145|spliceosome-associated protein 145|splicing factor 3B subunit 2 20121230 -9606 10993 SDS - SDH HGNC:10691|MIM:182128|Ensembl:ENSG00000135094|HPRD:01633|Vega:OTTHUMG00000169554 12 12q24.13 serine dehydratase protein-coding SDS serine dehydratase O L-serine ammonia-lyase|L-serine deaminase|L-serine dehydratase|L-serine dehydratase/L-threonine deaminase|L-threonine dehydratase|TDH 20121230 -9606 10994 ILVBL - 209L8|AHAS|ILV2H HGNC:6041|MIM:605770|Ensembl:ENSG00000105135|HPRD:16152|Vega:OTTHUMG00000165630 19 19p13.1 ilvB (bacterial acetolactate synthase)-like protein-coding ILVBL ilvB (bacterial acetolactate synthase)-like O acetolactate synthase homolog|acetolactate synthase-like protein|ilvB-like protein 20121230 -9606 10998 SLC27A5 - ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2 HGNC:10999|MIM:603314|Ensembl:ENSG00000083807|HPRD:04499 19 19q13.43 solute carrier family 27 (fatty acid transporter), member 5 protein-coding SLC27A5 solute carrier family 27 (fatty acid transporter), member 5 O BA-CoA ligase|VLACS-related|bile acid-CoA ligase|bile acyl-CoA synthetase|cholate--CoA ligase|fatty acid transport protein 5|fatty-acid-Coenzyme A ligase, very long-chain 3|solute carrier family 27 member 5|very long-chain acyl-CoA synthetase homolog 2|very long-chain acyl-CoA synthetase-related protein 20121230 -9606 10999 SLC27A4 RP11-339B21.7 ACSVL4|FATP4|IPS HGNC:10998|MIM:604194|Ensembl:ENSG00000167114|HPRD:09172|Vega:OTTHUMG00000020746 9 9q34.11 solute carrier family 27 (fatty acid transporter), member 4 protein-coding SLC27A4 solute carrier family 27 (fatty acid transporter), member 4 O long-chain fatty acid transport protein 4 20121230 -9606 11000 SLC27A3 PSEC0067 ACSVL3|FATP3|VLCS-3 HGNC:10997|MIM:604193|Ensembl:ENSG00000143554|HPRD:11967|Vega:OTTHUMG00000037155 1 1q21.3 solute carrier family 27 (fatty acid transporter), member 3 protein-coding SLC27A3 solute carrier family 27 (fatty acid transporter), member 3 O FATP-3|fatty acid transport protein 3|long-chain fatty acid transport protein 3|solute carrier family 27 member 3|very long-chain acyl-CoA synthetase homolog 3 20121230 -9606 11001 SLC27A2 - ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 HGNC:10996|MIM:603247|Ensembl:ENSG00000140284|HPRD:11935|Vega:OTTHUMG00000131643 15 15q21.2 solute carrier family 27 (fatty acid transporter), member 2 protein-coding SLC27A2 solute carrier family 27 (fatty acid transporter), member 2 O FATP-2|THCA-CoA ligase|fatty acid transport protein 2|fatty-acid-coenzyme A ligase, very long-chain 1|long-chain-fatty-acid--CoA ligase|solute carrier family 27 member 2|very long-chain acyl-CoA synthetase|very long-chain fatty-acid-coenzyme A ligase 1|very long-chain-fatty-acid-CoA ligase|very-long-chain acyl-CoA synthetase 20121230 -9606 11004 KIF2C RP11-269F19.1 KNSL6|MCAK HGNC:6393|MIM:604538|Ensembl:ENSG00000142945|HPRD:05172|Vega:OTTHUMG00000008416 1 1p34.1 kinesin family member 2C protein-coding KIF2C kinesin family member 2C O kinesin-like 6|kinesin-like protein 6|kinesin-like protein KIF2C|mitotic centromere-associated kinesin 20121230 -9606 11005 SPINK5 - LEKTI|LETKI|NETS|NS|VAKTI HGNC:15464|MIM:605010|Ensembl:ENSG00000133710|HPRD:05423|Vega:OTTHUMG00000134305 5 5q32 serine peptidase inhibitor, Kazal type 5 protein-coding SPINK5 serine peptidase inhibitor, Kazal type 5 O lympho-epithelial Kazal-type-related inhibitor|lymphoepithelial Kazal-type-related inhibitor|serine protease inhibitor Kazal-type 5|serine protease inhibitor, Kazal type 5 20121230 -9606 11006 LILRB4 XXbac-BCX360G3.3 CD85K|HM18|ILT3|LILRB5|LIR-5|LIR5 HGNC:6608|MIM:604821|Ensembl:ENSG00000186818|HPRD:11996|Vega:OTTHUMG00000065879 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 protein-coding LILRB4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 O CD85 antigen-like family member K|ILT-3|immunoglobulin-like transcript 3|leukocyte immunoglobulin-like receptor 5|leukocyte immunoglobulin-like receptor subfamily B member 4|leukocyte immunoglobulin-like receptor subfamily B member 4 soluble isoform|leukocyte immunoglobulin-like receptor, subfamily B, member 4|monocyte inhibitory receptor HM18 20121230 -9606 11007 CCDC85B - DIPA HGNC:24926|MIM:605360|Ensembl:ENSG00000175602|HPRD:16101|Vega:OTTHUMG00000166722 11 11q12.1 coiled-coil domain containing 85B protein-coding CCDC85B coiled-coil domain containing 85B O coiled-coil domain-containing protein 85B|delta-interacting protein A|hepatitis delta antigen interacting protein A|hepatitis delta antigen-interacting protein A 20121230 -9606 11009 IL24 - C49A|FISP|IL10B|MDA7|MOB5|ST16 HGNC:11346|MIM:604136|Ensembl:ENSG00000162892|HPRD:04995|Vega:OTTHUMG00000036459 1 1q32 interleukin 24 protein-coding IL24 interleukin 24 O IL-4-induced secreted protein|interleukin-24|melanocyte-associated Mda-7|melanoma differentiation-associated gene 7 protein|suppression of tumorigenicity 16 (melanoma differentiation) 20121230 -9606 11010 GLIPR1 - CRISP7|GLIPR|RTVP1 HGNC:17001|MIM:602692|Ensembl:ENSG00000139278|HPRD:04071|Vega:OTTHUMG00000169757 12 12q21.2 GLI pathogenesis-related 1 protein-coding GLIPR1 GLI pathogenesis-related 1 O GLI pathogenesis-related 1 (glioma)|gliPR 1|glioma pathogenesis-related protein 1|protein RTVP-1|related to testis-specific, vespid, and pathogenesis proteins 1|testes-specific vespid and pathogenesis protein 1 20121230 -9606 11011 TLK2 - HsHPK|PKU-ALPHA HGNC:11842|MIM:608439|Ensembl:ENSG00000146872|HPRD:10527|Vega:OTTHUMG00000179176 17 17q23 tousled-like kinase 2 protein-coding TLK2 tousled-like kinase 2 O serine/threonine kinase|serine/threonine-protein kinase tousled-like 2 20121230 -9606 11012 KLK11 UNQ649/PRO1279 PRSS20|TLSP HGNC:6359|MIM:604434|Ensembl:ENSG00000167757|HPRD:05114 19 19q13.33 kallikrein-related peptidase 11 protein-coding KLK11 kallikrein-related peptidase 11 O hK11|hippostasin|kallikrein 11|kallikrein-11|serine protease 20|trypsin-like protease 20121230 -9606 11013 TMSB15A - TMSB15|TMSB15B|TMSL8|TMSNB|Tb15|TbNB HGNC:30744|MIM:601587|Ensembl:ENSG00000158164|HPRD:06744|Vega:OTTHUMG00000022054 X Xq21.33-q22.3 thymosin beta 15a protein-coding TMSB15A thymosin beta 15a O NB thymosin beta|Thymosin beta-15B|thymosin beta-15A|thymosin, beta, identified in neuroblastoma cells|thymosin-like 8|thymosin-like protein 8 20121230 -9606 11014 KDELR2 tcag7.840 ELP-1|ERD2.2 HGNC:6305|MIM:609024|Ensembl:ENSG00000136240|HPRD:06598|Vega:OTTHUMG00000023103 7 7p22.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 protein-coding KDELR2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 O (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2|ER lumen protein retaining receptor 2|ERD-2-like protein|ERD2-like protein 1|KDEL endoplasmic reticulum protein retention receptor 2|KDEL receptor 2 20121230 -9606 11015 KDELR3 RP3-434P1.3 ERD2L3 HGNC:6306|Ensembl:ENSG00000100196|HPRD:17177|Vega:OTTHUMG00000153520 22 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 protein-coding KDELR3 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 O ER lumen protein retaining receptor 3|KDEL endoplasmic reticulum protein retention receptor 3|KDEL receptor 3 20121230 -9606 11016 ATF7 - ATFA HGNC:792|MIM:606371|Ensembl:ENSG00000170653|Ensembl:ENSG00000267281|HPRD:06968|Vega:OTTHUMG00000169776|Vega:OTTHUMG00000182349 12 12q13 activating transcription factor 7 protein-coding ATF7 activating transcription factor 7 O cyclic AMP-dependent transcription factor ATF-7|transcription factor ATF-A 20121230 -9606 11017 SNRNP27 - 27K|RY1 HGNC:30240|Ensembl:ENSG00000124380|HPRD:15288|Vega:OTTHUMG00000152689 2 2p13.3 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) protein-coding SNRNP27 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) O U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein|U4/U6.U5 tri-snRNP-associated 27 kDa protein|U4/U6.U5 tri-snRNP-associated protein 3|U4/U6.U5-27K|putative nucleic acid binding protein RY-1 20121230 -9606 11018 TMED1 - IL1RL1LG|Il1rl1l|ST2L|Tp24 HGNC:17291|MIM:605395|Ensembl:ENSG00000099203|HPRD:05653|Vega:OTTHUMG00000180696 19 19p13.2 transmembrane emp24 protein transport domain containing 1 protein-coding TMED1 transmembrane emp24 protein transport domain containing 1 O IL1RL1-binding protein|T1/ST2 receptor binding protein|interleukin 1 receptor-like 1 ligand|interleukin-1 receptor-like 1 ligand|p24 family protein gamma-1|p24gamma1|putative T1/ST2 receptor-binding protein|transmembrane emp24 domain containing 1|transmembrane emp24 domain-containing protein 1 20121230 -9606 11019 LIAS HUSSY-01 LAS|LIP1|LS|PDHLD HGNC:16429|MIM:607031|Ensembl:ENSG00000121897|HPRD:09514|Vega:OTTHUMG00000099369 4 4p14 lipoic acid synthetase protein-coding LIAS lipoic acid synthetase O lip-syn|lipoate synthase|lipoyl synthase, mitochondrial 20121230 -9606 11020 IFT27 LL22NC01-132D12.2 RABL4|RAYL HGNC:18626|Ensembl:ENSG00000100360|Vega:OTTHUMG00000150544 22 22q13.1 intraflagellar transport 27 homolog (Chlamydomonas) protein-coding IFT27 intraflagellar transport 27 homolog (Chlamydomonas) O RAB, member of RAS oncogene family-like 4|intraflagellar transport protein 27 homolog|rab-like protein 4 20121230 -9606 11021 RAB35 - H-ray|RAB1C|RAY HGNC:9774|MIM:604199|Ensembl:ENSG00000111737|HPRD:05010|Vega:OTTHUMG00000169159 12 12q24.31 RAB35, member RAS oncogene family protein-coding RAB35 RAB35, member RAS oncogene family O GTP-binding protein RAY|ras-related protein Rab-35|ras-related protein rab-1c (GTP-binding protein ray) 20121230 -9606 11022 TDRKH RP11-98D18.8 TDRD2 HGNC:11713|MIM:609501|Ensembl:ENSG00000182134|HPRD:15485|Vega:OTTHUMG00000013062 1 1q21 tudor and KH domain containing protein-coding TDRKH tudor and KH domain containing O putative RNA binding protein|tudor and KH domain containing protein|tudor and KH domain-containing protein|tudor domain containing 2|tudor domain-containing protein 2 20121230 -9606 11023 VAX1 RP11-501J20.1 MCOPS11 HGNC:12660|MIM:604294|Ensembl:ENSG00000148704|HPRD:16052|Vega:OTTHUMG00000019117 10 10q26.1 ventral anterior homeobox 1 protein-coding VAX1 ventral anterior homeobox 1 O - 20121230 -9606 11024 LILRA1 XXbac-BCX85G21.3 CD85I|LIR-6|LIR6 HGNC:6602|MIM:604810|Ensembl:ENSG00000104974|HPRD:07272|Vega:OTTHUMG00000065701 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1 protein-coding LILRA1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1 O CD85 antigen-like family member I|leukocyte immunoglobulin-like receptor 6|leukocyte immunoglobulin-like receptor subfamily A member 1|leukocyte immunoglobulin-like receptor subfamily A member 1 soluble isoform 20121230 -9606 11025 LILRB3 XXbac-BCX105G6.7 CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIRB HGNC:6607|MIM:604820|Ensembl:ENSG00000204577|HPRD:11995|Vega:OTTHUMG00000066626 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 protein-coding LILRB3 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 O CD85 antigen-like family member A|immunoglobulin-like transcript 5|leukocyte immunoglobulin-like receptor 3|leukocyte immunoglobulin-like receptor subfamily B member 3|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6|monocyte inhibitory receptor HL9 20121230 -9606 11026 LILRA3 XXbac-BCX403H19.1 CD85E|HM31|HM43|ILT6|LIR-4|LIR4|e3 HGNC:6604|MIM:604818|Ensembl:ENSG00000170866|HPRD:10382|Vega:OTTHUMG00000065358 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 protein-coding LILRA3 leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 O CD85 antigen-like family member E|ILT-6|immunoglobulin-like transcript 6|leucocyte immunoglobulin-like receptor|leukocyte immunoglobulin-like receptor 4|leukocyte immunoglobulin-like receptor A3|leukocyte immunoglobulin-like receptor subfamily A member 3|monocyte inhibitory receptor HM43/HM31 20121230 -9606 11027 LILRA2 XXbac-BCX85G21.2 CD85H|ILT1|LIR-7|LIR7 HGNC:6603|MIM:604812|Ensembl:ENSG00000239998|HPRD:11992|Vega:OTTHUMG00000065703 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 protein-coding LILRA2 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 O CD85 antigen-like family member H|ILT-1|immunoglobulin-like transcript 1|leukocyte immunoglobulin-like receptor 7|leukocyte immunoglobulin-like receptor subfamily A member 2|leukocyte immunoglobulin-like receptor subfamily A member 2 soluble 20121230 -9606 11029 SERPINB8P1 - PI8L1|SERPINB11|SERPINBP1 HGNC:8953 6 6p25 serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1 pseudo SERPINB8P1 serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1 O - 20121230 -9606 11030 RBPMS - HERMES HGNC:19097|MIM:601558|Ensembl:ENSG00000157110|HPRD:11870|Vega:OTTHUMG00000163845 8 8p12 RNA binding protein with multiple splicing protein-coding RBPMS RNA binding protein with multiple splicing O RBP-MS|RNA-binding protein with multiple splicing|heart and RRM expressed sequence 20121230 -9606 11031 RAB31 - Rab22B HGNC:9771|MIM:605694|Ensembl:ENSG00000168461|HPRD:05751|Vega:OTTHUMG00000178513 18 18p11.3 RAB31, member RAS oncogene family protein-coding RAB31 RAB31, member RAS oncogene family O ras-related protein Rab-22B|ras-related protein Rab-31 20121230 -9606 11033 ADAP1 - CENTA1|GCS1L|p42IP4 HGNC:16486|MIM:608114|Ensembl:ENSG00000105963|HPRD:09733|Vega:OTTHUMG00000023380 7 7p22.3 ArfGAP with dual PH domains 1 protein-coding ADAP1 ArfGAP with dual PH domains 1 O arf-GAP with dual PH domain-containing protein 1|centaurin, alpha 1|centaurin-alpha|centaurin-alpha-1|cnt-a1|putative MAPK-activating protein PM25 20121230 -9606 11034 DSTN - ACTDP|ADF|bA462D18.2 HGNC:15750|MIM:609114|Ensembl:ENSG00000125868|HPRD:16446|Vega:OTTHUMG00000031947 20 20p12.1 destrin (actin depolymerizing factor) protein-coding DSTN destrin (actin depolymerizing factor) O actin-depolymerizing factor|bA462D18.2 (destrin (actin depolymerizing factor ADF) (ACTDP))|destrin 20121230 -9606 11035 RIPK3 - RIP3 HGNC:10021|MIM:605817|Ensembl:ENSG00000129465|HPRD:09315|Vega:OTTHUMG00000029349 14 14q11.2 receptor-interacting serine-threonine kinase 3 protein-coding RIPK3 receptor-interacting serine-threonine kinase 3 O RIP-3|RIP-like protein kinase 3|receptor interacting protein 3|receptor-interacting protein 3|receptor-interacting serine/threonine-protein kinase 3 20121230 -9606 11036 GTF2A1L - ALF HGNC:30727|MIM:605358|Ensembl:ENSG00000242441|HPRD:05640|Vega:OTTHUMG00000152038 2 2p16.3 general transcription factor IIA, 1-like protein-coding GTF2A1L general transcription factor IIA, 1-like O GTF2A1-like factor|TFIIA large subunit isoform ALF|TFIIA-alpha and beta-like factor|TFIIA-alpha/beta-like factor|general transcription factor II A, 1-like factor 20121230 -9606 11037 STON1 - SALF|SBLF|STN1|STNB1 HGNC:17003|MIM:605357|Ensembl:ENSG00000243244|HPRD:16100|Vega:OTTHUMG00000129169 2 2p16.3 stonin 1 protein-coding STON1 stonin 1 O stoned B homolog 1|stoned B-like factor|stoned-b1|stonin-1 20121230 -9606 11039 SMA4 - SMA3|b55C20.2 HPRD:15404 5 5q13.2 glucuronidase, beta pseudogene pseudo - - - - 20121230 -9606 11040 PIM2 - - HGNC:8987|MIM:300295|Ensembl:ENSG00000102096|HPRD:02244|Vega:OTTHUMG00000024132 X Xp11.23 pim-2 oncogene protein-coding PIM2 pim-2 oncogene O pim-2h|proto-oncogene Pim-2 (serine threonine kinase)|serine/threonine protein kinase pim-2|serine/threonine-protein kinase pim-2 20121230 -9606 11041 B3GNT1 - B3GN-T1|B3GNT6|BETA3GNTI|iGAT|iGNT HGNC:15685|MIM:605517|Ensembl:ENSG00000174684|HPRD:09270|Vega:OTTHUMG00000167082 11 11q13.2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 protein-coding B3GNT1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 O N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6|beta-1,3-N-acetylglucosaminyltransferase bGnT-6|i-beta-1,3-N-acetylglucosaminyltransferase|poly-N-acetyllactosamine extension enzyme 20121230 -9606 11042 SMA5 - - HPRD:18067 5 5q13 glucuronidase, beta pseudogene pseudo - - - - 20121209 -9606 11043 MID2 RP6-191P20.2 FXY2|RNF60|TRIM1 HGNC:7096|MIM:300204|Ensembl:ENSG00000080561|HPRD:02191|Vega:OTTHUMG00000022171 X Xq22.3 midline 2 protein-coding MID2 midline 2 O RING finger protein 60|midin 2|midin-2|midline defect 2|midline-2|probable E3 ubiquitin-protein ligase MID2|tripartite motif protein 1|tripartite motif-containing protein 1 20121230 -9606 11044 PAPD7 - LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 HGNC:16705|MIM:605198|Ensembl:ENSG00000112941|HPRD:09239|Vega:OTTHUMG00000090457 5 5p15 PAP associated domain containing 7 protein-coding PAPD7 PAP associated domain containing 7 O DNA polymerase kappa|DNA polymerase sigma|PAP-associated domain-containing protein 7|TUTase 5|polymerase (DNA directed) sigma|polymerase (DNA-directed) sigma|terminal uridylyltransferase 5|topoisomerase-related function protein 4-1 20121230 -9606 11045 UPK1A - TSPAN21|UP1A|UPIA|UPKA HGNC:12577|MIM:611557|Ensembl:ENSG00000105668|HPRD:15624|Vega:OTTHUMG00000048115 19 19q13.13 uroplakin 1A protein-coding UPK1A uroplakin 1A O tetraspanin-21|tspan-21|uroplakin Ia|uroplakin-1a 20121230 -9606 11046 SLC35D2 RP11-240L7.2 HFRC1|SQV7L|UGTrel8|hfrc HGNC:20799|MIM:609182|Ensembl:ENSG00000130958|HPRD:16456|Vega:OTTHUMG00000020293 9 9q22.32 solute carrier family 35, member D2 protein-coding SLC35D2 solute carrier family 35, member D2 O SQV7-like protein|UDP-N-acetylglucosamine transporter|UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter|UDP-galactose transporter-related protein 8|fringe connection|homolog of Fringe connection protein 1 20121230 -9606 11047 ADRM1 - ARM1|GP110|Rpn13 HGNC:15759|MIM:610650|Ensembl:ENSG00000130706|HPRD:06440|Vega:OTTHUMG00000032904 20 20q13.33 adhesion regulating molecule 1 protein-coding ADRM1 adhesion regulating molecule 1 O 110 kDa cell membrane glycoprotein|ARM-1|M(r) 110,000 surface antigen|adhesion-regulating molecule 1|hRpn13|proteasomal ubiquitin receptor ADRM1|proteasome regulatory particle non-ATPase 13|regulatory particle non-ATPase 13|rpn13 homolog 20121230 -9606 11049 NUS1P3 - YDD19 HGNC:30934 13 13q12 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 3 pseudo NUS1P3 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 3 O - 20121230 -9606 11051 NUDT21 - CFIM25|CPSF5 HGNC:13870|MIM:604978|Ensembl:ENSG00000167005|HPRD:05400|Vega:OTTHUMG00000133240 16 16q12.2 nudix (nucleoside diphosphate linked moiety X)-type motif 21 protein-coding NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 O CPSF 25 kDa subunit|cleavage and polyadenylation specific factor 5, 25 kD subunit|cleavage and polyadenylation specific factor 5, 25 kDa|cleavage and polyadenylation specificity factor 25 kDa subunit|cleavage and polyadenylation specificity factor subunit 5|nucleoside diphosphate-linked moiety X motif 21|nudix motif 21|pre-mRNA cleavage factor Im (25kD)|pre-mRNA cleavage factor Im 25 kDa subunit|pre-mRNA cleavage factor Im, 25kD subunit 20121230 -9606 11052 CPSF6 - CFIM|CFIM68|HPBRII-4|HPBRII-7 HGNC:13871|MIM:604979|Ensembl:ENSG00000111605|Vega:OTTHUMG00000169340 12 12q15 cleavage and polyadenylation specific factor 6, 68kDa protein-coding CPSF6 cleavage and polyadenylation specific factor 6, 68kDa O CPSF 68 kDa subunit|cleavage and polyadenylation specificity factor 68 kDa subunit|cleavage and polyadenylation specificity factor subunit 6|pre-mRNA cleavage factor I, 68kD subunit|pre-mRNA cleavage factor Im (68kD)|pre-mRNA cleavage factor Im 68 kDa subunit|protein HPBRII-4/7 20121230 -9606 11054 OGFR RP5-885L7.2 - HGNC:15768|MIM:606459|Ensembl:ENSG00000060491|HPRD:08404|Vega:OTTHUMG00000032937 20 20q13.3 opioid growth factor receptor protein-coding OGFR opioid growth factor receptor O 7-60 protein|protein 7-60|zeta-type opioid receptor 20121230 -9606 11055 ZPBP - ZPBP1 HGNC:15662|MIM:608498|Ensembl:ENSG00000042813|HPRD:18364|Vega:OTTHUMG00000023528 7 7p14.3 zona pellucida binding protein protein-coding ZPBP zona pellucida binding protein O zona pellucida binding protein 1|zona pellucida-binding protein 1 20121230 -9606 11056 DDX52 HUSSY-19 HUSSY19|ROK1 HGNC:20038|MIM:612500|Ensembl:ENSG00000141141|HPRD:09911|Vega:OTTHUMG00000133121 17 17q21.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 protein-coding DDX52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 O DEAD box protein 52|probable ATP-dependent RNA helicase DDX52 20121230 -9606 11057 ABHD2 - HS1-2|LABH2|PHPS1-2 HGNC:18717|MIM:612196|Ensembl:ENSG00000140526|HPRD:09791|Vega:OTTHUMG00000148684 15 15q26.1 abhydrolase domain containing 2 protein-coding ABHD2 abhydrolase domain containing 2 O abhydrolase domain-containing protein 2|alpha/beta hydrolase domain containing protein 2|lung alpha/beta hydrolase 2|protein PHPS1-2 20121230 -9606 11059 WWP1 - AIP5|Tiul1|hSDRP1 HGNC:17004|MIM:602307|Ensembl:ENSG00000123124|HPRD:03811|Vega:OTTHUMG00000163690 8 8q21 WW domain containing E3 ubiquitin protein ligase 1 protein-coding WWP1 WW domain containing E3 ubiquitin protein ligase 1 O NEDD4-like E3 ubiquitin-protein ligase WWP1|Nedd-4-like ubiquitin-protein ligase|TGIF-interacting ubiquitin ligase 1|WW domain-containing protein 1|atrophin-1 interacting protein 5|atrophin-1-interacting protein 5 20121230 -9606 11060 WWP2 - AIP2|WWp2-like HGNC:16804|MIM:602308|Ensembl:ENSG00000198373|HPRD:03812|Vega:OTTHUMG00000137573 16 16q22.1 WW domain containing E3 ubiquitin protein ligase 2 protein-coding WWP2 WW domain containing E3 ubiquitin protein ligase 2 O NEDD4-like E3 ubiquitin-protein ligase WWP2|atrophin-1 interacting protein 2 20121230 -9606 11061 LECT1 RP11-93H24.1 BRICD3|CHM-I|CHM1|MYETS1 HGNC:17005|MIM:605147|Ensembl:ENSG00000136110|HPRD:05511|Vega:OTTHUMG00000016980 13 13q14.3 leukocyte cell derived chemotaxin 1 protein-coding LECT1 leukocyte cell derived chemotaxin 1 O BRICHOS domain containing 3|chondromodulin I|chondromodulin-1|chondromodulin-I|leukocyte cell-derived chemotaxin 1|multiple myeloma tumor suppressor 1 20121230 -9606 11062 DUS4L - DUS4|PP35 HGNC:21517|Ensembl:ENSG00000105865|HPRD:17886|Vega:OTTHUMG00000154763 7 7q22-q31 dihydrouridine synthase 4-like (S. cerevisiae) protein-coding DUS4L dihydrouridine synthase 4-like (S. cerevisiae) O protein similar to E.coli yhdg and R. capsulatus nifR3|tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like 20121230 -9606 11063 SOX30 - - HGNC:30635|MIM:606698|Ensembl:ENSG00000039600|HPRD:09461|Vega:OTTHUMG00000130247 5 5q33 SRY (sex determining region Y)-box 30 protein-coding SOX30 SRY (sex determining region Y)-box 30 O Sox30 protein type II|transcription factor SOX-30 20121230 -9606 11064 CNTRL RP11-165P4.1 CEP1|CEP110|FAN|bA165P4.1 HGNC:1858|MIM:605496|Ensembl:ENSG00000119397|HPRD:05691|Vega:OTTHUMG00000020581 9 9q33.2 centriolin protein-coding CNTRL centriolin O 110 kDa centrosomal protein|bA165P4.1 (ortholog of mouse Ma2a8)|bA165P4.2 (centrosomal protein 1)|centriole associated protein|centrosomal protein 110kDa|centrosomal protein of 110 kDa 20121230 -9606 11065 UBE2C RP3-447F3.1 UBCH10|dJ447F3.2 HGNC:15937|MIM:605574|Ensembl:ENSG00000175063|HPRD:05717|Vega:OTTHUMG00000033038 20 20q13.12 ubiquitin-conjugating enzyme E2C protein-coding UBE2C ubiquitin-conjugating enzyme E2C O cyclin-selective ubiquitin carrier protein|mitotic-specific ubiquitin-conjugating enzyme|ubiquitin carrier protein C|ubiquitin carrier protein E2-C|ubiquitin-conjugating enzyme E2 C|ubiquitin-protein ligase C 20121230 -9606 11066 SNRNP35 - HM-1|U1SNRNPBP HGNC:30852|Ensembl:ENSG00000184209|HPRD:15595|Vega:OTTHUMG00000167584 12 12q24.31 small nuclear ribonucleoprotein 35kDa (U11/U12) protein-coding SNRNP35 small nuclear ribonucleoprotein 35kDa (U11/U12) O U1 snRNP binding protein homolog|U1 snRNP-binding protein homolog|U1-snRNP binding protein homolog|U11/U12 small nuclear ribonucleoprotein 35 kDa protein|U11/U12 snRNP 35 kDa protein|U11/U12 snRNP 35K|U11/U12-35K|protein HM-1 20121230 -9606 11067 C10orf10 - DEPP|FIG HGNC:23355|MIM:611309|Ensembl:ENSG00000165507|HPRD:12558|Vega:OTTHUMG00000018063 10 10q11.21 chromosome 10 open reading frame 10 protein-coding C10orf10 chromosome 10 open reading frame 10 O decidual protein induced by progesterone|fasting induced|fasting-induced gene protein|fasting-induced protein|protein DEPP 20121230 -9606 11068 CYB561D2 LUCA12.2 101F6|TSP10 HGNC:30253|MIM:607068|Ensembl:ENSG00000114395|HPRD:06143|Vega:OTTHUMG00000156813 3 3p21.3 cytochrome b-561 domain containing 2 protein-coding CYB561D2 cytochrome b-561 domain containing 2 O cytochrome b561 domain-containing protein 2|putative tumor suppressor 101F6|putative tumor suppressor protein 101F6 20121230 -9606 11069 RAPGEF4 - CAMP-GEFII|CGEF2|EPAC2|Nbla00496 HGNC:16626|MIM:606058|Ensembl:ENSG00000091428|HPRD:06929|Vega:OTTHUMG00000133677 2 2q31-q32 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding RAPGEF4 Rap guanine nucleotide exchange factor (GEF) 4 O EPAC 2|RAP guanine-nucleotide-exchange factor (GEF) 4|cAMP-regulated guanine nucleotide exchange factor II|exchange factor directly activated by cAMP 2|exchange protein directly activated by cAMP 2|putative protein product of Nbla00496|rap guanine nucleotide exchange factor 4 20121230 -9606 11070 TMEM115 LUCA11.2 PL6 HGNC:30055|MIM:607069|Ensembl:ENSG00000126062|HPRD:06144|Vega:OTTHUMG00000044212 3 3p21.3 transmembrane protein 115 protein-coding TMEM115 transmembrane protein 115 O PP6|placental protein 6 20121230 -9606 11072 DUSP14 - MKP-L|MKP6 HGNC:17007|MIM:606618|Ensembl:ENSG00000161326|HPRD:09427|Vega:OTTHUMG00000133061 17 17q12 dual specificity phosphatase 14 protein-coding DUSP14 dual specificity phosphatase 14 O MAP kinase phosphatase 6|MKP-1 like protein tyrosine phosphatase|MKP-1-like protein tyrosine phosphatase|MKP-6|dual specificity protein phosphatase 14|mitogen-activated protein kinase phosphatase 6 20121230 -9606 11073 TOPBP1 - TOP2BP1 HGNC:17008|MIM:607760|Ensembl:ENSG00000163781|HPRD:09678|Vega:OTTHUMG00000159773 3 3q22.1 topoisomerase (DNA) II binding protein 1 protein-coding TOPBP1 topoisomerase (DNA) II binding protein 1 O DNA topoisomerase 2-binding protein 1|DNA topoisomerase II-beta-binding protein 1|DNA topoisomerase II-binding protein 1 20121230 -9606 11074 TRIM31 DAAP-112O13.2 C6orf13|HCG1|HCGI|RNF HGNC:16289|MIM:609316|Ensembl:ENSG00000204616|HPRD:10281|Vega:OTTHUMG00000031064 6 6p21.3 tripartite motif containing 31 protein-coding TRIM31 tripartite motif containing 31 O E3 ubiquitin-protein ligase TRIM31|ring finger protein|tripartite motif-containing 31 gamma|tripartite motif-containing protein 31 20121230 -9606 11075 STMN2 - SCG10|SCGN10 HGNC:10577|MIM:600621|Ensembl:ENSG00000104435|HPRD:09003|Vega:OTTHUMG00000164610 8 8q21.13 stathmin-like 2 protein-coding STMN2 stathmin-like 2 O neuron-specific growth-associated protein|neuronal growth-associated protein (silencer element)|stathmin-2|superior cervical ganglia, neural specific 10|superior cervical ganglion-10 protein 20121230 -9606 11076 TPPP - TPPP/p25|TPPP1|p24|p25|p25alpha HGNC:24164|MIM:608773|Ensembl:ENSG00000171368|HPRD:18522|Vega:OTTHUMG00000131011 5 5p15.3 tubulin polymerization promoting protein protein-coding TPPP tubulin polymerization promoting protein O 25 kDa brain-specific protein|brain specific protein p25 alpha|glycogen synthase kinase 3 (GSK3) inhibitor p24|p25-alpha|tubulin polymerization-promoting protein 20121230 -9606 11077 HSF2BP - - HGNC:5226|MIM:604554|Ensembl:ENSG00000160207|HPRD:05186|Vega:OTTHUMG00000086863 21 21q22.3 heat shock transcription factor 2 binding protein protein-coding HSF2BP heat shock transcription factor 2 binding protein O heat shock factor 2-binding protein 20121230 -9606 11078 TRIOBP HRIHFB2122 DFNB28|TARA|dJ37E16.4 HGNC:17009|MIM:609761|Ensembl:ENSG00000100106|HPRD:11028|Vega:OTTHUMG00000150657 22 22q13.1 TRIO and F-actin binding protein protein-coding TRIOBP TRIO and F-actin binding protein O TRIO and F-actin-binding protein|protein Tara|tara-like protein|trio-associated repeat on actin 20121230 -9606 11079 RER1 RP4-740C4.2 - HGNC:30309|Ensembl:ENSG00000157916|HPRD:17967|Vega:OTTHUMG00000001403 1 1p36 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) protein-coding RER1 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) O protein RER1 20121230 -9606 11080 DNAJB4 - DNAJW|DjB4|HLJ1 HGNC:14886|MIM:611327|Ensembl:ENSG00000162616|HPRD:07486|Vega:OTTHUMG00000040905 1 1p31.1 DnaJ (Hsp40) homolog, subfamily B, member 4 protein-coding DNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4 O DnaJ-like heat shock protein 40|HSP40 homolog|dnaJ homolog subfamily B member 4|heat shock 40 kDa protein 1 homolog|heat shock protein 40 homolog|human liver DnaJ-like protein 20121230 -9606 11081 KERA - CNA2|SLRR2B HGNC:6309|MIM:603288|Ensembl:ENSG00000139330|HPRD:04477|Vega:OTTHUMG00000170073 12 12q22 keratocan protein-coding KERA keratocan O KTN|keratan sulfate proteoglycan keratocan 20121230 -9606 11082 ESM1 - endocan HGNC:3466|MIM:601521|Ensembl:ENSG00000164283|HPRD:03310|Vega:OTTHUMG00000097010 5 5q11.2 endothelial cell-specific molecule 1 protein-coding ESM1 endothelial cell-specific molecule 1 O ESM-1 20121230 -9606 11083 DIDO1 RP5-885L7.1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 HGNC:2680|MIM:604140|Ensembl:ENSG00000101191|HPRD:10363|HPRD:12752|Vega:OTTHUMG00000032945 20 20q13.33 death inducer-obliterator 1 protein-coding DIDO1 death inducer-obliterator 1 O death-associated transcription factor 1|death-inducer obliterator 1 20121230 -9606 11085 ADAM30 UNQ2509/PRO5997 svph4 HGNC:208|MIM:604779|Ensembl:ENSG00000134249|HPRD:05307|Vega:OTTHUMG00000012176 1 1p12 ADAM metallopeptidase domain 30 protein-coding ADAM30 ADAM metallopeptidase domain 30 O a disintegrin and metalloproteinase domain 30|disintegrin and metalloproteinase domain-containing protein 30 20121230 -9606 11086 ADAM29 - CT73|svph1 HGNC:207|MIM:604778|Ensembl:ENSG00000168594|HPRD:05306|Vega:OTTHUMG00000160764 4 4q34 ADAM metallopeptidase domain 29 protein-coding ADAM29 ADAM metallopeptidase domain 29 O a disintegrin and metalloproteinase domain 29|cancer/testis antigen 73|disintegrin and metalloproteinase domain-containing protein 29 20121230 -9606 11091 WDR5 - BIG-3|SWD3 HGNC:12757|MIM:609012|Ensembl:ENSG00000196363|HPRD:10614|Vega:OTTHUMG00000131707 9 9q34 WD repeat domain 5 protein-coding WDR5 WD repeat domain 5 O BMP2-induced 3-kb gene protein|SWD3, Set1c WD40 repeat protein, homolog|WD repeat-containing protein 5|WD-repeat protein 5 20121230 -9606 11092 C9orf9 - - HGNC:1367|Ensembl:ENSG00000165698|HPRD:12986|Vega:OTTHUMG00000020847 9 9q34 chromosome 9 open reading frame 9 protein-coding C9orf9 chromosome 9 open reading frame 9 O Rsb66 homolog|uncharacterized protein C9orf9 20121230 -9606 11093 ADAMTS13 UNQ6102/PRO20085 13|ADAM-TS|ADAM-TS13|ADAMTS-13|C9orf8|TTP|VWFCP|vWF-CP HGNC:1366|MIM:604134|Ensembl:ENSG00000160323|HPRD:04994|Vega:OTTHUMG00000020876 9 9q34 ADAM metallopeptidase with thrombospondin type 1 motif, 13 protein-coding ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 O A disintegrin and metalloproteinase with thrombospondin motifs 13|ADAM-TS 13|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13|vWF-cleaving protease|von Willebrand factor-cleaving protease 20121230 -9606 11094 CACFD1 RP13-100B2.5 C9orf7|D9S2135|FLOWER HGNC:1365|MIM:613104|Ensembl:ENSG00000160325|HPRD:12974|Vega:OTTHUMG00000020875 9 9q34 calcium channel flower domain containing 1 protein-coding CACFD1 calcium channel flower domain containing 1 O calcium channel flower domain-containing protein 1|calcium channel flower homolog 20121230 -9606 11095 ADAMTS8 - ADAM-TS8|METH2 HGNC:224|MIM:605175|Ensembl:ENSG00000134917|HPRD:05531|Vega:OTTHUMG00000165656 11 11q25 ADAM metallopeptidase with thrombospondin type 1 motif, 8 protein-coding ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif, 8 O A disintegrin and metalloproteinase with thrombospondin motifs 8|ADAM-TS 8|ADAMTS-8|METH-2|METH-8|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 8 20121230 -9606 11096 ADAMTS5 - ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 HGNC:221|MIM:605007|Ensembl:ENSG00000154736|HPRD:05420|Vega:OTTHUMG00000078686 21 21q21.3 ADAM metallopeptidase with thrombospondin type 1 motif, 5 protein-coding ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 O A disintegrin and metalloproteinase with thrombospondin motifs 5|a disintegrin and metalloproteinase with thrombospondin motifs 11|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)|aggrecanase-2 20121230 -9606 11097 NUPL2 - CG1|NLP-1|NLP_1|hCG1 HGNC:17010|Ensembl:ENSG00000136243|HPRD:14855|Vega:OTTHUMG00000096955 7 7p15 nucleoporin like 2 protein-coding NUPL2 nucleoporin like 2 O H_RG271G13.9|NUP42 homolog|nucleoporin hCG1|nucleoporin-like protein 1|nucleoporin-like protein 2 20121230 -9606 11098 PRSS23 UNQ270/PRO307 SIG13|SPUVE|ZSIG13 HGNC:14370|Ensembl:ENSG00000150687|HPRD:07149|Vega:OTTHUMG00000167226 11 11q14.1 protease, serine, 23 protein-coding PRSS23 protease, serine, 23 O putative secreted protein Zsig13|serine protease 23|serine protease, umbilical endothelium 20121230 -9606 11099 PTPN21 - PTPD1|PTPRL10 HGNC:9651|MIM:603271|Ensembl:ENSG00000070778|HPRD:04468|Vega:OTTHUMG00000170766 14 14q31.3 protein tyrosine phosphatase, non-receptor type 21 protein-coding PTPN21 protein tyrosine phosphatase, non-receptor type 21 O dJ1175B15.2 (protein tyrosine phosphatase, non-receptor type 21)|protein tyrosine phosphatase D1|protein-tyrosine phosphatase D1|tyrosine-protein phosphatase non-receptor type 21 20121230 -9606 11100 HNRNPUL1 - E1B-AP5|E1BAP5|HNRPUL1 HGNC:17011|MIM:605800|Ensembl:ENSG00000105323|HPRD:10428 19 19q13.2 heterogeneous nuclear ribonucleoprotein U-like 1 protein-coding HNRNPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 O E1B 55kDa associated protein 5|E1B-55 kDa-associated protein 5|E1B-55kDa-associated protein 5|adenovirus early region 1B-associated protein 5|heterogeneous nuclear ribonucleoprotein U-like protein 1 20121230 -9606 11101 ATE1 RP11-78A18.1 - HGNC:782|MIM:607103|Ensembl:ENSG00000107669|HPRD:06979|Vega:OTTHUMG00000019178 10 10q26.13 arginyltransferase 1 protein-coding ATE1 arginyltransferase 1 O R-transferase 1|arginine-tRNA--protein transferase 1|arginyl-tRNA--protein transferase 1|arginyl-tRNA-protein transferase 20121230 -9606 11102 RPP14 - P14 HGNC:30327|MIM:606112|Ensembl:ENSG00000163684|HPRD:18001|Vega:OTTHUMG00000159152 3 3p14.3 ribonuclease P/MRP 14kDa subunit protein-coding RPP14 ribonuclease P/MRP 14kDa subunit O ribonuclease P protein subunit p14 20121230 -9606 11103 KRR1 - HRB2|RIP-1 HGNC:5176|MIM:612817|Ensembl:ENSG00000111615|HPRD:11027|Vega:OTTHUMG00000169759 12 12q21.2 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) O HIV-1 Rev binding protein 2|HIV-1 Rev-binding protein 2|KRR-R motif-containing protein 1|KRR1 small subunit processome component homolog|Rev interacting protein|rev-interacting protein 1 20121230 -9606 11104 KATNA1 - - HGNC:6216|MIM:606696|Ensembl:ENSG00000186625|HPRD:05986|Vega:OTTHUMG00000015787 6 6q25.1 katanin p60 (ATPase containing) subunit A 1 protein-coding KATNA1 katanin p60 (ATPase containing) subunit A 1 O katanin p60 (ATPase-containing) subunit A 1|katanin p60 ATPase-containing subunit A1|katanin p60 subunit A1|p60 katanin 20121230 -9606 11105 PRDM7 - PFM4|ZNF910 HGNC:9351|MIM:609759|Ensembl:ENSG00000126856|HPRD:17903|Vega:OTTHUMG00000138990 16 16q24.3 PR domain containing 7 protein-coding PRDM7 PR domain containing 7 O PR domain zinc finger protein 7|PR domain-containing protein 7|PR-domain family protein 4|probable histone-lysine N-methyltransferase PRDM7 20121230 -9606 11107 PRDM5 - BCS2|PFM2 HGNC:9349|MIM:614161|Ensembl:ENSG00000138738|HPRD:17902|Vega:OTTHUMG00000132970 4 4q25-q26 PR domain containing 5 protein-coding PRDM5 PR domain containing 5 O PR domain zinc finger protein 5 20121230 -9606 11108 PRDM4 - PFM1 HGNC:9348|MIM:605780|Ensembl:ENSG00000110851|HPRD:10425|Vega:OTTHUMG00000169914 12 12q23-q24.1 PR domain containing 4 protein-coding PRDM4 PR domain containing 4 O PR domain zinc finger protein 4|PR domain-containing protein 4|PR-domain zinc-finger protein PFM1 20121230 -9606 11112 HIBADH - NS5ATP1 HGNC:4907|MIM:608475|Ensembl:ENSG00000106049|HPRD:12238|Vega:OTTHUMG00000097035 7 7p15.2 3-hydroxyisobutyrate dehydrogenase protein-coding HIBADH 3-hydroxyisobutyrate dehydrogenase O 3'-hydroxyisobutyrate dehydrogenase|3-hydroxyisobutyrate dehydrogenase, mitochondrial 20121230 -9606 11113 CIT - CRIK|STK21 HGNC:1985|MIM:605629|Ensembl:ENSG00000122966|HPRD:09289|Vega:OTTHUMG00000134325 12 12q24 citron (rho-interacting, serine/threonine kinase 21) protein-coding CIT citron (rho-interacting, serine/threonine kinase 21) O citron Rho-interacting kinase|serine/threonine-protein kinase 21 20121230 -9606 11116 FGFR1OP - FOP HGNC:17012|MIM:605392|Ensembl:ENSG00000213066|HPRD:10392|Vega:OTTHUMG00000016011 6 6q27 FGFR1 oncogene partner protein-coding FGFR1OP FGFR1 oncogene partner O fibroblast growth factor receptor 1 oncogene partner 20121230 -9606 11117 EMILIN1 - EMI|EMILIN|gp115 HGNC:19880|MIM:130660|Ensembl:ENSG00000138080|HPRD:00563|Vega:OTTHUMG00000097069 2 2p23.3-p23.2 elastin microfibril interfacer 1 protein-coding EMILIN1 elastin microfibril interfacer 1 O EMILIN-1|elastin microfibril interface located protein|elastin microfibril interface-located protein 1 20121230 -9606 11118 BTN3A2 - BT3.2|BT3.3|BTF4 HGNC:1139|MIM:613594|Ensembl:ENSG00000186470|HPRD:12547|Vega:OTTHUMG00000014450 6 6p22.1 butyrophilin, subfamily 3, member A2 protein-coding BTN3A2 butyrophilin, subfamily 3, member A2 O butyrophilin protein|butyrophilin subfamily 3 member A2 20121230 -9606 11119 BTN3A1 RP1-45P21.1 BT3.1|BTF5|CD277 HGNC:1138|MIM:613593|Ensembl:ENSG00000026950|HPRD:10693|Vega:OTTHUMG00000014449 6 6p22.1 butyrophilin, subfamily 3, member A1 protein-coding BTN3A1 butyrophilin, subfamily 3, member A1 O butyrophilin subfamily 3 member A1|dJ45P21.3 (butyrophilin, subfamily 3, member A1) 20121230 -9606 11120 BTN2A1 CTA-14H9.1 BK14H9.1|BT2.1|BTF1|DJ3E1.1 HGNC:1136|MIM:613590|Ensembl:ENSG00000112763|HPRD:12544|Vega:OTTHUMG00000014457 6 6p22.1 butyrophilin, subfamily 2, member A1 protein-coding BTN2A1 butyrophilin, subfamily 2, member A1 O butyrophilin BTF1|butyrophilin subfamily 2 member A1 20121230 -9606 11122 PTPRT RP5-1121H13.2 RPTPrho HGNC:9682|MIM:608712|Ensembl:ENSG00000196090|HPRD:06690|Vega:OTTHUMG00000033040 20 20q12-q13 protein tyrosine phosphatase, receptor type, T protein-coding PTPRT protein tyrosine phosphatase, receptor type, T O R-PTP-T|RPTP-rho|receptor protein tyrosine phosphatase|receptor-type tyrosine-protein phosphatase T|receptor-type tyrosine-protein phosphatase rho 20121230 -9606 11123 RCAN3 RP4-594I10.1 DSCR1L2|MCIP3|RCN3|hRCN3 HGNC:3042|MIM:605860|Ensembl:ENSG00000117602|HPRD:05792|Vega:OTTHUMG00000003298 1 1p35.3-p33 RCAN family member 3 protein-coding RCAN3 RCAN family member 3 O Down syndrome candidate region 1-like 2|Down syndrome critical region gene 1-like 2|calcipressin-3|down syndrome candidate region 1-like protein 2|myocyte-enriched calcineurin-interacting protein 3|regulator of calcineurin 3 isoform 1b,2 20121230 -9606 11124 FAF1 CGI-03 HFAF1s|UBXD12|UBXN3A|hFAF1 HGNC:3578|MIM:604460|Ensembl:ENSG00000185104|HPRD:05124|Vega:OTTHUMG00000007930 1 1p33 Fas (TNFRSF6) associated factor 1 protein-coding FAF1 Fas (TNFRSF6) associated factor 1 O FAS-associated factor 1|TNFRSF6-associated factor 1|UBX domain protein 3A|UBX domain-containing protein 12|UBX domain-containing protein 3A 20121230 -9606 11126 CD160 RP11-373C9.1 BY55|NK1|NK28 HGNC:17013|MIM:604463|Ensembl:ENSG00000117281|HPRD:06833|Vega:OTTHUMG00000013749 1 1q21.1 CD160 molecule protein-coding CD160 CD160 molecule O CD160 antigen|CD160 transmembrane isoform|CD160-delta Ig|natural killer cell receptor BY55|natural killer cell receptor, immunoglobulin superfamily member 20121230 -9606 11127 KIF3A - FLA10|KLP-20 HGNC:6319|MIM:604683|Ensembl:ENSG00000131437|HPRD:05250|Vega:OTTHUMG00000059725 5 5q31 kinesin family member 3A protein-coding KIF3A kinesin family member 3A O kinesin family protein 3A|kinesin-like protein KIF3A|microtubule plus end-directed kinesin motor 3A 20121230 -9606 11128 POLR3A - ADDH|HLD7|RPC1|RPC155|hRPC155 HGNC:30074|MIM:614258|Ensembl:ENSG00000148606|HPRD:17879|Vega:OTTHUMG00000018550 10 10q22-q23 polymerase (RNA) III (DNA directed) polypeptide A, 155kDa protein-coding POLR3A polymerase (RNA) III (DNA directed) polypeptide A, 155kDa O DNA-directed RNA polymerase III largest subunit|DNA-directed RNA polymerase III subunit A|DNA-directed RNA polymerase III subunit RPC1|RNA polymerase III 155 kDa subunit|RNA polymerase III subunit C1|RNA polymerase III subunit C160|RNA polymerase III subunit RPC155-D 20121230 -9606 11129 CLASRP UNQ2428/PRO4988 CLASP|SFRS16|SWAP2 HGNC:17731|Ensembl:ENSG00000104859|HPRD:11552|Vega:OTTHUMG00000150189 19 19q13.3 CLK4-associating serine/arginine rich protein protein-coding CLASRP CLK4-associating serine/arginine rich protein O Clk4 associating SR-related protein|splicing factor, arginine/serine-rich 16 (suppressor-of-white-apricot homolog, Drosophila)|suppressor of white apricot homolog 2|suppressor of white-apricot homolog 2 20121230 -9606 11130 ZWINT - HZwint-1|KNTC2AP|ZWINT1 HGNC:13195|MIM:609177|Ensembl:ENSG00000122952|HPRD:18366|Vega:OTTHUMG00000018261 10 10q21-q22 ZW10 interactor protein-coding ZWINT ZW10 interactor O ZW10-interacting protein 1|human ZW10 interacting protein-1|zwint-1 20121230 -9606 11131 CAPN11 - calpain11 HGNC:1478|MIM:604822|Ensembl:ENSG00000137225|HPRD:05315|Vega:OTTHUMG00000014758 6 6p12 calpain 11 protein-coding CAPN11 calpain 11 O CANP 11|calcium-activated neutral proteinase 11|calpain-11 20121230 -9606 11132 CAPN10 - CANP10|NIDDM1 HGNC:1477|MIM:605286|Ensembl:ENSG00000142330|HPRD:05595|Vega:OTTHUMG00000133358 2 2q37.3 calpain 10 protein-coding CAPN10 calpain 10 O calcium-activated neutral proteinase 10|calpain-10|calpain-like protease CAPN10 20121230 -9606 11133 KPTN - 2E4 HGNC:6404|Ensembl:ENSG00000118162|HPRD:17241 19 19q13.32 kaptin (actin binding protein) protein-coding KPTN kaptin (actin binding protein) O actin-associated protein 2E4|kaptin|kaptin (actin-binding protein) 20121230 -9606 11135 CDC42EP1 RP5-1177I5.4 BORG5|CEP1|MSE55 HGNC:17014|MIM:606084|Ensembl:ENSG00000128283|HPRD:07303|Vega:OTTHUMG00000150591 22 22q13.1 CDC42 effector protein (Rho GTPase binding) 1 protein-coding CDC42EP1 CDC42 effector protein (Rho GTPase binding) 1 O 55 kDa bone marrow stromal/endothelial cell protein|binder of Rho GTPases 5|cdc42 effector protein 1|serum constituent protein|serum protein MSE55 20121230 -9606 11136 SLC7A9 - BAT1|CSNU3 HGNC:11067|MIM:604144|Ensembl:ENSG00000021488|HPRD:04997|Vega:OTTHUMG00000180287 19 19q13.1 solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9 protein-coding SLC7A9 solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9 O B(0,+)-type amino acid transporter 1|b(0,+)AT|glycoprotein-associated amino acid transporter b0,+AT1|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 20121230 -9606 11137 PWP1 - IEF-SSP-9502 HGNC:17015|Ensembl:ENSG00000136045|HPRD:11464|Vega:OTTHUMG00000169913 12 12q23.3 PWP1 homolog (S. cerevisiae) protein-coding PWP1 PWP1 homolog (S. cerevisiae) O keratinocyte protein IEF SSP 9502|nuclear phosphoprotein similar to S. cerevisiae PWP1|periodic tryptophan protein 1 homolog 20121230 -9606 11138 TBC1D8 - AD3|HBLP1|TBC1D8A|VRP HGNC:17791|Ensembl:ENSG00000204634|HPRD:06752|Vega:OTTHUMG00000153040 2 2q11.2 TBC1 domain family, member 8 (with GRAM domain) protein-coding TBC1D8 TBC1 domain family, member 8 (with GRAM domain) O AD 3|BUB2-like protein 1|TBC1 domain family member 8|TBC1 domain family, member 8A|vascular Rab-GAP/TBC-containing protein 20121230 -9606 11140 CDC37 - P50CDC37 HGNC:1735|MIM:605065|Ensembl:ENSG00000105401|HPRD:05456|Vega:OTTHUMG00000180578 19 19p13.2 cell division cycle 37 homolog (S. cerevisiae) protein-coding CDC37 cell division cycle 37 homolog (S. cerevisiae) O CDC37 (cell division cycle 37, S. cerevisiae, homolog)|CDC37 cell division cycle 37 homolog|hsp90 chaperone protein kinase-targeting subunit|hsp90 co-chaperone Cdc37 20121230 -9606 11141 IL1RAPL1 - IL1R8|IL1RAPL|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 HGNC:5996|MIM:300206|Ensembl:ENSG00000169306|HPRD:02193|Vega:OTTHUMG00000021317 X Xp22.1-p21.3 interleukin 1 receptor accessory protein-like 1 protein-coding IL1RAPL1 interleukin 1 receptor accessory protein-like 1 O IL-1-RAPL-1|IL-1RAPL-1|IL1RAPL-1|X-linked interleukin-1 receptor accessory protein-like 1|interleukin 1 receptor-8|interleukin-1 receptor accessory protein-like 1|mental retardation, X-linked 10|oligophrenin-4|three immunoglobulin domain-containing IL-1 receptor-related 2 20121230 -9606 11142 PKIG - - HGNC:9019|MIM:604932|Ensembl:ENSG00000168734|HPRD:05379|Vega:OTTHUMG00000033065 20 20q12-q13.1 protein kinase (cAMP-dependent, catalytic) inhibitor gamma protein-coding PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma O PKI-gamma|cAMP-dependent protein kinase inhibitor gamma 20121230 -9606 11143 KAT7 - HBO1|HBOA|MYST2 HGNC:17016|MIM:609880|Ensembl:ENSG00000136504|HPRD:07135|Vega:OTTHUMG00000161770 17 17q21.32 K(lysine) acetyltransferase 7 protein-coding KAT7 K(lysine) acetyltransferase 7 O MOZ, YBF2/SAS3, SAS2 and TIP60 protein 2|MYST histone acetyltransferase 2|MYST-2|histone acetyltransferase KAT7|histone acetyltransferase MYST2|histone acetyltransferase binding to ORC1|lysine acetyltransferase 7 20121230 -9606 11144 DMC1 RP1-199H16.4 DMC1H|HsLim15|LIM15|dJ199H16.1 HGNC:2927|MIM:602721|Ensembl:ENSG00000100206|HPRD:04099|Vega:OTTHUMG00000151088 22 22q13.1 DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) protein-coding DMC1 DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) O DMC1 homologue|disrupted meiotic cDNA1, yeast, homolog of|meiotic recombination protein DMC1/LIM15 homolog 20121230 -9606 11145 PLA2G16 - AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 HGNC:17825|MIM:613867|Ensembl:ENSG00000176485|HPRD:13671|Vega:OTTHUMG00000167852 11 11q12.3 phospholipase A2, group XVI protein-coding PLA2G16 phospholipase A2, group XVI O Ca-independent phospholipase A1/2|H-rev 107 protein homolog|HRAS-like suppressor 1|HRAS-like suppressor 3|adipose-specific PLA2|adipose-specific phospholipase A2|group XVI phospholipase A1/A2|group XVI phospholipase A2|renal carcinoma antigen NY-REN-65 20121230 -9606 11146 GLMN - FAP|FAP48|FAP68|FKBPAP|GLML|GVM|VMGLOM HGNC:14373|MIM:601749|Ensembl:ENSG00000174842|HPRD:03451|Vega:OTTHUMG00000010283 1 1p22.1 glomulin, FKBP associated protein protein-coding GLMN glomulin, FKBP associated protein O FK506-binding protein-associated protein|FKBP-associated protein|glomulin 20121230 -9606 11147 HHLA3 RP11-180O5.1 - HGNC:4906|MIM:604372|Ensembl:ENSG00000197568|HPRD:05083|Vega:OTTHUMG00000009346 1 1p31.1 HERV-H LTR-associating 3 protein-coding HHLA3 HERV-H LTR-associating 3 O HERV-H LTR-associating protein 3|human endogenous retrovirus-H long terminal repeat-associating 3|human endogenous retrovirus-H long terminal repeat-associating protein 3 20121230 -9606 11148 HHLA2 - B7H7 HGNC:4905|MIM:604371|Ensembl:ENSG00000114455|HPRD:05082|Vega:OTTHUMG00000159224 3 3q13.13 HERV-H LTR-associating 2 protein-coding HHLA2 HERV-H LTR-associating 2 O HERV-H LTR-associating protein 2|human endogenous retrovirus-H long terminal repeat-associating protein 2 20121230 -9606 11149 BVES RP3-522O2.1 HBVES|POP1|POPDC1 HGNC:1152|MIM:604577|Ensembl:ENSG00000112276|HPRD:06842|Vega:OTTHUMG00000015291 6 6q21 blood vessel epicardial substance protein-coding BVES blood vessel epicardial substance O popeye domain containing 1|popeye domain-containing protein 1|popeye protein 1 20121230 -9606 11151 CORO1A - CLABP|CLIPINA|HCORO1|TACO|p57 HGNC:2252|MIM:605000|Ensembl:ENSG00000102879|HPRD:05414|Vega:OTTHUMG00000132148 16 16p11.2 coronin, actin binding protein, 1A protein-coding CORO1A coronin, actin binding protein, 1A O clipin-A|coronin-1|coronin-1A|coronin-like protein A|coronin-like protein p57|tryptophan aspartate-containing coat protein 20121230 -9606 11152 WDR45 JM5 NBIA4|WDRX1|WIPI-4|WIPI4 HGNC:28912|MIM:300526|Ensembl:ENSG00000196998|HPRD:06597|Vega:OTTHUMG00000034500 X Xp11.23 WD repeat domain 45 protein-coding WDR45 WD repeat domain 45 O WD repeat domain phosphoinositide-interacting protein 4|WD repeat domain, X-linked 1|WD repeat-containing protein 45|WD45 repeat protein interacting with phosphoinositides 4|neurodegeneration with brain iron accumulation 4 20121230 -9606 11153 FICD UNQ3041/PRO9857 HIP13|HYPE|UNQ3041 HGNC:18416|Ensembl:ENSG00000198855|HPRD:13723|Vega:OTTHUMG00000169569 12 12q24.1 FIC domain containing protein-coding FICD FIC domain containing O AMPylator FICD|FIC domain-containing protein|HIP-13|Huntingtin interacting protein E|adenosine monophosphate-protein transferase FICD|fic S-phase protein cell division homolog|huntingtin interacting protein 13|huntingtin interactor protein E|huntingtin yeast partner E|huntingtin-interacting protein 13|huntingtin-interacting protein E 20121230 -9606 11154 AP4S1 - AP47B|CLA20|CLAPS4|CPSQ6|SPG52 HGNC:575|MIM:607243|Ensembl:ENSG00000100478|HPRD:06257|Vega:OTTHUMG00000140202 14 14q12 adaptor-related protein complex 4, sigma 1 subunit protein-coding AP4S1 adaptor-related protein complex 4, sigma 1 subunit O AP-4 adapter complex subunit sigma-1|AP-4 complex subunit sigma-1|clathrin-associated/assembly/adaptor protein, sigma 4|sigma-4-adaptin 20121230 -9606 11155 LDB3 - CMD1C|CYPHER|LDB3Z1|LDB3Z4|LVNC3|ORACLE|PDLIM6|ZASP HGNC:15710|MIM:605906|Ensembl:ENSG00000122367|HPRD:16172|Vega:OTTHUMG00000018655 10 10q22.3-q23.2 LIM domain binding 3 protein-coding LDB3 LIM domain binding 3 O LIM domain-binding protein 3|PDZ and LIM domain 6|Z-band alternatively spliced PDZ-motif protein|protein cypher 20121230 -9606 11156 PTP4A3 - PRL-3|PRL-R|PRL3 HGNC:9636|MIM:606449|Ensembl:ENSG00000184489|HPRD:05922|Vega:OTTHUMG00000164490 8 8q24.3 protein tyrosine phosphatase type IVA, member 3 protein-coding PTP4A3 protein tyrosine phosphatase type IVA, member 3 O potentially prenylated protein tyrosine phosphatase|protein tyrosine phosphatase type IVA 3|protein-tyrosine phosphatase 4a3|protein-tyrosine phosphatase of regenerating liver 3 20121230 -9606 11157 LSM6 - YDR378C HGNC:17017|MIM:607286|Ensembl:ENSG00000164167|HPRD:06286|Vega:OTTHUMG00000161440 4 4q31.22 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding LSM6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) O Sm protein F|U6 snRNA-associated Sm-like protein LSm6 20121230 -9606 11158 RABL2B - - HGNC:9800|MIM:605413|Ensembl:ENSG00000079974|HPRD:10395|Vega:OTTHUMG00000150156 22 22q13.33 RAB, member of RAS oncogene family-like 2B protein-coding RABL2B RAB, member of RAS oncogene family-like 2B O rab-like protein 2B 20121230 -9606 11159 RABL2A RP11-395L14.2 - HGNC:9799|MIM:605412|Ensembl:ENSG00000144134|HPRD:10394|Vega:OTTHUMG00000047828 2 2q13 RAB, member of RAS oncogene family-like 2A protein-coding RABL2A RAB, member of RAS oncogene family-like 2A O rab-like protein 2A 20121230 -9606 11160 ERLIN2 UNQ2441 C8orf2|Erlin-2|NET32|SPFH2|SPG18 HGNC:1356|MIM:611605|Ensembl:ENSG00000147475|HPRD:15437|Vega:OTTHUMG00000164005 8 8p11.2 ER lipid raft associated 2 protein-coding ERLIN2 ER lipid raft associated 2 O SPFH domain family, member 2|endoplasmic reticulum lipid raft-associated protein 2|erlin-2|stomatin-prohibitin-flotillin-HflC/K domain-containing protein 2 20121230 -9606 11161 C14orf1 AD-011 ERG28|NET51 HGNC:1187|MIM:604576|Ensembl:ENSG00000133935|HPRD:05201|Vega:OTTHUMG00000171488 14 14q24.3 chromosome 14 open reading frame 1 protein-coding C14orf1 chromosome 14 open reading frame 1 O probable ergosterol biosynthetic protein 28 20121230 -9606 11162 NUDT6 - ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 HGNC:8053|MIM:606261|Ensembl:ENSG00000170917|HPRD:05880|Vega:OTTHUMG00000039507 4 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 protein-coding NUDT6 nudix (nucleoside diphosphate linked moiety X)-type motif 6 O antisense basic fibroblast growth factor|nucleoside diphosphate-linked moiety X motif 6 20121230 -9606 11163 NUDT4 HDCMB47P DIPP2|DIPP2alpha|DIPP2beta HGNC:8051|MIM:609229|Ensembl:ENSG00000173598|HPRD:14850|Vega:OTTHUMG00000170155 12 12q21 nudix (nucleoside diphosphate linked moiety X)-type motif 4 protein-coding NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4 O DIPP-2|diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 2|diphosphoinositol polyphosphate phosphohydrolase 2|diphosphoinositol polyphosphate phosphohydrolase type 2 20121230 -9606 11164 NUDT5 HSPC115 YSA1|YSA1H|hYSAH1 HGNC:8052|MIM:609230|Ensembl:ENSG00000165609|HPRD:14851|Vega:OTTHUMG00000017682 10 10p14 nudix (nucleoside diphosphate linked moiety X)-type motif 5 protein-coding NUDT5 nudix (nucleoside diphosphate linked moiety X)-type motif 5 O 8-oxo-dGDP phosphatase|ADP-sugar pyrophosphatase|nucleoside diphosphate linked moiety X-type motif 5|nucleoside diphosphate-linked moiety X motif 5|nudix motif 5 20121230 -9606 11165 NUDT3 - DIPP|DIPP-1|DIPP1 HGNC:8050|MIM:609228|Ensembl:ENSG00000112664|HPRD:14849|Vega:OTTHUMG00000014545 6 6p21.2 nudix (nucleoside diphosphate linked moiety X)-type motif 3 protein-coding NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 O diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1|diphosphoinositol polyphosphate phosphohydrolase 1|nucleoside diphosphate-linked moiety X motif 3|nudix motif 3 20121230 -9606 11166 SOX21 - SOX25 HGNC:11197|MIM:604974|Ensembl:ENSG00000125285|HPRD:16083|Vega:OTTHUMG00000017209 13 13q31-q32 SRY (sex determining region Y)-box 21 protein-coding SOX21 SRY (sex determining region Y)-box 21 O SOX-A|SRY-box 21|transcription factor SOX-21 20121230 -9606 11167 FSTL1 - FRP|FSL1 HGNC:3972|MIM:605547|Ensembl:ENSG00000163430|HPRD:16120|Vega:OTTHUMG00000159440 3 3q13.33 follistatin-like 1 protein-coding FSTL1 follistatin-like 1 O follistatin-like protein 1|follistatin-related protein 1 20121230 -9606 11168 PSIP1 - DFS70|LEDGF|PAIP|PSIP2|p52|p75 HGNC:9527|MIM:603620|Ensembl:ENSG00000164985|HPRD:04688|Vega:OTTHUMG00000021021 9 9p22.3 PC4 and SFRS1 interacting protein 1 protein-coding PSIP1 PC4 and SFRS1 interacting protein 1 O CLL-associated antigen KW-7|DFS 70|PC4 and SFRS1-interacting protein|dense fine speckles 70 kDa protein|lens epithelium-derived growth factor|transcriptional coactivator p52/p75|transcriptional coactivator p75/p52 20121230 -9606 11169 WDHD1 - AND-1|CHTF4|CTF4 HGNC:23170|MIM:608126|Ensembl:ENSG00000198554|HPRD:10483|Vega:OTTHUMG00000140304 14 14q22.2 WD repeat and HMG-box DNA binding protein 1 protein-coding WDHD1 WD repeat and HMG-box DNA binding protein 1 O Acidic nucleoplasmic DNA-binding protein 1|CTF4, chromosome transmission fidelity factor 4 homolog|WD repeat and HMG-box DNA-binding protein 1 20121230 -9606 11170 FAM107A - DRR1|TU3A HGNC:30827|MIM:608295|Ensembl:ENSG00000168309|HPRD:09753|Vega:OTTHUMG00000159159 3 3p21.1 family with sequence similarity 107, member A protein-coding FAM107A family with sequence similarity 107, member A O down-regulated in renal cell carcinoma 1|family with sequence similarity 107 member A transcript|protein FAM107A 20121230 -9606 11171 STRAP - MAWD|PT-WD|UNRIP HGNC:30796|MIM:605986|Ensembl:ENSG00000023734|HPRD:05816|Vega:OTTHUMG00000168791 12 12p12.3 serine/threonine kinase receptor associated protein protein-coding STRAP serine/threonine kinase receptor associated protein O MAP activator with WD repeats|WD-40 repeat protein PT-WD|serine-threonine kinase receptor-associated protein|unr-interacting protein 20121230 -9606 11172 INSL6 - RIF1 HGNC:6089|MIM:606414|Ensembl:ENSG00000120210|HPRD:08401|Vega:OTTHUMG00000019489 9 9p24 insulin-like 6 protein-coding INSL6 insulin-like 6 O insulin-like peptide 5|insulin-like peptide 6|insulin-like peptide INSL6|relaxin/insulin-like factor 1 20121230 -9606 11173 ADAMTS7 - ADAM-TS 7|ADAM-TS7|ADAMTS-7 HGNC:223|MIM:605009|Ensembl:ENSG00000136378|HPRD:05422|Vega:OTTHUMG00000172907 15 15q24.2 ADAM metallopeptidase with thrombospondin type 1 motif, 7 protein-coding ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 O A disintegrin and metalloproteinase with thrombospondin motifs 7|COMPase|a disintegrin and metalloprotease with thrombospondin motifs-7 preproprotein|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 7 20121230 -9606 11174 ADAMTS6 - ADAM-TS 6|ADAM-TS6|ADAMTS-6 HGNC:222|MIM:605008|Ensembl:ENSG00000049192|HPRD:05421|Vega:OTTHUMG00000074079 5 5q12 ADAM metallopeptidase with thrombospondin type 1 motif, 6 protein-coding ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 O A disintegrin and metalloproteinase with thrombospondin motifs 6|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6 20121230 -9606 11176 BAZ2A - TIP5|WALp3 HGNC:962|MIM:605682|Ensembl:ENSG00000076108|HPRD:10417|Vega:OTTHUMG00000170332 12 12q13.3 bromodomain adjacent to zinc finger domain, 2A protein-coding BAZ2A bromodomain adjacent to zinc finger domain, 2A O TTF-I interacting peptide 5|TTF-I-interacting protein 5|bromodomain adjacent to zinc finger domain protein 2A|hWALp3|transcription termination factor I-interacting protein 5 20121230 -9606 11177 BAZ1A HSPC317 ACF1|WALp1|WCRF180|hACF1 HGNC:960|MIM:605680|Ensembl:ENSG00000198604|Vega:OTTHUMG00000140216 14 14q13.2 bromodomain adjacent to zinc finger domain, 1A protein-coding BAZ1A bromodomain adjacent to zinc finger domain, 1A O ATP-dependent chromatin remodeling protein|ATP-dependent chromatin-remodeling protein|ATP-utilizing chromatin assembly and remodeling factor 1|CHRAC subunit ACF1|bromodomain adjacent to zinc finger domain protein 1A|hWALp1|williams syndrome transcription factor-related chromatin-remodeling factor 180 20121230 -9606 11178 LZTS1 - F37|FEZ1 HGNC:13861|MIM:606551|Ensembl:ENSG00000061337|HPRD:05945|Vega:OTTHUMG00000097027 8 8p22 leucine zipper, putative tumor suppressor 1 protein-coding LZTS1 leucine zipper, putative tumor suppressor 1 O F37/Esophageal cancer-related gene-coding leucine-zipper motif|leucine zipper putative tumor suppressor 1 20121230 -9606 11179 ZNF277 - NRIF4|ZNF277P HGNC:13070|MIM:605465|Ensembl:ENSG00000198839|HPRD:05680|Vega:OTTHUMG00000150209 7 7q31.1 zinc finger protein 277 protein-coding ZNF277 zinc finger protein 277 O nuclear receptor-interacting factor 4|zinc finger protein (C2H2 type) 277|zinc finger protein 277 pseudogene 20121230 -9606 11180 WDR6 - - HGNC:12758|MIM:606031|Ensembl:ENSG00000178252|HPRD:06912|Vega:OTTHUMG00000133546 3 3p21.31 WD repeat domain 6 protein-coding WDR6 WD repeat domain 6 O WD repeat-containing protein 6 20121230 -9606 11181 TREH - TRE|TREA HGNC:12266|MIM:275360|Ensembl:ENSG00000118094|HPRD:02038|Vega:OTTHUMG00000166409 11 11q23.3 trehalase (brush-border membrane glycoprotein) protein-coding TREH trehalase (brush-border membrane glycoprotein) O alpha,alpha-trehalose glucohydrolase|trehalase 20121230 -9606 11182 SLC2A6 RP13-100B2.6 GLUT6|GLUT9|HSA011372 HGNC:11011|MIM:606813|Ensembl:ENSG00000160326|HPRD:06010|Vega:OTTHUMG00000020874 9 9q34 solute carrier family 2 (facilitated glucose transporter), member 6 protein-coding SLC2A6 solute carrier family 2 (facilitated glucose transporter), member 6 O GLUT-6|GLUT-9|glucose transporter type 6|glucose transporter type 9|solute carrier family 2, facilitated glucose transporter member 6 20121230 -9606 11183 MAP4K5 - GCKR|KHS|KHS1|MAPKKKK5 HGNC:6867|MIM:604923|Ensembl:ENSG00000012983|HPRD:05374|Vega:OTTHUMG00000170888 14 14q11.2-q21 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 O MAPK/ERK kinase kinase kinase 5|MEK kinase kinase 5|MEKKK 5|germinal center kinase-related|kinase homologous to SPS1/STE20 20121230 -9606 11184 MAP4K1 - HPK1 HGNC:6863|MIM:601983|Ensembl:ENSG00000104814|HPRD:03583|Vega:OTTHUMG00000180863 19 19q13.1-q13.4 mitogen-activated protein kinase kinase kinase kinase 1 protein-coding MAP4K1 mitogen-activated protein kinase kinase kinase kinase 1 O MAPK/ERK kinase kinase kinase 1|MEK kinase kinase 1|MEKKK 1|hematopoietic progenitor kinase 1 20121230 -9606 11185 INMT - TEMT HGNC:6069|MIM:604854|Ensembl:ENSG00000241644|HPRD:06890|Vega:OTTHUMG00000167163 7 7p14.3 indolethylamine N-methyltransferase protein-coding INMT indolethylamine N-methyltransferase O amine N-methyltransferase|aromatic alkylamine N-methyltransferase|arylamine N-methyltransferase|indolamine N-methyltransferase|nicotine N-methyltransferase|thioether S-methyltransferase 20121230 -9606 11186 RASSF1 - 123F2|NORE2A|RASSF1A|RDA32|REH3P21 HGNC:9882|MIM:605082|Ensembl:ENSG00000068028|HPRD:05470|Vega:OTTHUMG00000149958 3 3p21.3 Ras association (RalGDS/AF-6) domain family member 1 protein-coding RASSF1 Ras association (RalGDS/AF-6) domain family member 1 O WUGSC:H_LUCA12.5|cardiac-specific ras association domain family 1 protein|pancreas-specific ras association domain family 1 protein|ras association domain-containing protein 1|tumor suppressor protein RDA32 20121230 -9606 11187 PKP3 - - HGNC:9025|MIM:605561|Ensembl:ENSG00000184363|HPRD:05711|Vega:OTTHUMG00000119068 11 11p15 plakophilin 3 protein-coding PKP3 plakophilin 3 O plakophilin 3b|plakophilin-3 20121230 -9606 11188 NISCH - I-1|IRAS HGNC:18006|Ensembl:ENSG00000010322|HPRD:11391|Vega:OTTHUMG00000158571 3 3p21.1 nischarin protein-coding NISCH nischarin O I-1 receptor candidate protein|I1R candidate protein|IR1|hIRAS|imidazoline receptor 1|imidazoline receptor antisera selected|imidazoline receptor antisera-selected protein|imidazoline receptor candidate|imidazoline-1 receptor candidate protein 20121230 -9606 11189 CELF3 RP11-98D18.4 BRUNOL1|CAGH4|ERDA4|TNRC4 HGNC:11967|MIM:612678|Ensembl:ENSG00000159409|HPRD:18210|Vega:OTTHUMG00000013064 1 1q21 CUGBP, Elav-like family member 3 protein-coding CELF3 CUGBP, Elav-like family member 3 O CAG repeat domain|CAG repeat protein 4|CELF-3|CUG-BP and ETR-3 like factor 3|CUG-BP- and ETR-3-like factor 3|CUGBP Elav-like family member 3|ELAV-type RNA-binding protein 1|ETR-1|RNA-binding protein BRUNOL-1|bruno-like protein 1|expanded repeat domain protein CAG/CTG 4|expanded repeat domain, CAG/CTG 4|trinucleotide repeat containing 4|trinucleotide repeat-containing gene 4 protein 20121230 -9606 11190 CEP250 RP3-477O4.2 C-NAP1|CEP2|CNAP1 HGNC:1859|MIM:609689|Ensembl:ENSG00000126001|HPRD:09877|Vega:OTTHUMG00000032343 20 20q11.22 centrosomal protein 250kDa protein-coding CEP250 centrosomal protein 250kDa O 250 kDa centrosomal protein|centrosomal Nek2-associated protein 1|centrosomal protein, 250-KD|centrosome associated protein|centrosome-associated protein CEP250 20121230 -9606 11191 PTENP1 - PTEN-rs|PTEN2|PTH2|psiPTEN HGNC:9589|MIM:613531 9 9p21 phosphatase and tensin homolog pseudogene 1 pseudo PTENP1 phosphatase and tensin homolog pseudogene 1 O - 20121230 -9606 11192 DYX3 - - HGNC:3110|MIM:604254 2 2p16-p15 dyslexia susceptibility 3 unknown DYX3 dyslexia susceptibility 3 O - 20120622 -9606 11193 WBP4 - FBP21 HGNC:12739|MIM:604981|Ensembl:ENSG00000120688|HPRD:16086|Vega:OTTHUMG00000016784 13 13q14.11 WW domain binding protein 4 protein-coding WBP4 WW domain binding protein 4 O WBP-4|WW domain-binding protein 4|WW domain-containing binding protein 4|WW domain-containing-binding protein 4|domain-containing binding protein 4|formin binding protein 21|formin-binding protein 21 20121230 -9606 11194 ABCB8 - EST328128|M-ABC1|MABC1 HGNC:49|MIM:605464|Ensembl:ENSG00000197150|HPRD:10400|Vega:OTTHUMG00000158686 7 7q36 ATP-binding cassette, sub-family B (MDR/TAP), member 8 protein-coding ABCB8 ATP-binding cassette, sub-family B (MDR/TAP), member 8 O ATP-binding cassette sub-family B member 8, mitochondrial|mitochondrial ABC protein|mitochondrial ATP-binding cassette 1 20121230 -9606 11196 SEC23IP MSTP053 P125|P125A HGNC:17018|Ensembl:ENSG00000107651|HPRD:07152|Vega:OTTHUMG00000019161 10 10q25-q26 SEC23 interacting protein protein-coding SEC23IP SEC23 interacting protein O SEC23-interacting protein 20121230 -9606 11197 WIF1 UNQ191/PRO217 WIF-1 HGNC:18081|MIM:605186|Ensembl:ENSG00000156076|HPRD:05541|Vega:OTTHUMG00000168832 12 12q14.3 WNT inhibitory factor 1 protein-coding WIF1 WNT inhibitory factor 1 O wnt inhibitory factor 1 20121230 -9606 11198 SUPT16H - CDC68|FACTP140|SPT16/CDC68 HGNC:11465|MIM:605012|Ensembl:ENSG00000092201|HPRD:16088|Vega:OTTHUMG00000029685 14 14q11.2 suppressor of Ty 16 homolog (S. cerevisiae) protein-coding SUPT16H suppressor of Ty 16 homolog (S. cerevisiae) O FACT 140 kDa subunit|FACT complex subunit SPT16|chromatin-specific transcription elongation factor 140 kDa subunit|facilitates chromatin remodeling 140 kDa subunit|facilitates chromatin transcription complex subunit SPT16|hSPT16 20121230 -9606 11199 ANXA10 - ANX14 HGNC:534|MIM:608008|Ensembl:ENSG00000109511|HPRD:09724|Vega:OTTHUMG00000161275 4 4q33 annexin A10 protein-coding ANXA10 annexin A10 O annexin 14|annexin-10|annexin-14 20121230 -9606 11200 CHEK2 RP11-436C9.1 CDS1|CHK2|HuCds1|LFS2|PP1425|RAD53|hCds1 HGNC:16627|MIM:604373|Ensembl:ENSG00000183765|HPRD:05084|Vega:OTTHUMG00000151023 22 22q12.1 checkpoint kinase 2 protein-coding CHEK2 checkpoint kinase 2 O CHK2 checkpoint homolog|cds1 homolog|checkpoint-like protein CHK2|serine/threonine-protein kinase Chk2 20121230 -9606 11201 POLI - RAD30B|RAD3OB HGNC:9182|MIM:605252|Ensembl:ENSG00000101751|HPRD:16094|Vega:OTTHUMG00000132704 18 18q21.1 polymerase (DNA directed) iota protein-coding POLI polymerase (DNA directed) iota O DNA polymerase iota|RAD30 homolog B|eta2|polymerase (DNA-directed), iota 20121230 -9606 11202 KLK8 UNQ283/PRO322 HNP|NP|NRPN|PRSS19|TADG14 HGNC:6369|MIM:605644|Ensembl:ENSG00000129455|HPRD:05733 19 19q13 kallikrein-related peptidase 8 protein-coding KLK8 kallikrein-related peptidase 8 O KLK8 protein type 1|KLK8 protein type 2|hK8|kallikrein-8|neuropsin type 1|neuropsin type 2|ovasin|serine protease 19|serine protease TADG-14|tumor-associated differentially expressed gene 14 protein 20121230 -9606 11209 MST1P2 - MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3 HGNC:7383 1 1p36.2 macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 pseudo MST1P2 macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 O - 20121230 -9606 11211 FZD10 - CD350|FZ-10|Fz10|FzE7|hFz10 HGNC:4039|MIM:606147|Ensembl:ENSG00000111432|HPRD:05853|Vega:OTTHUMG00000168380 12 12q24.33 frizzled family receptor 10 protein-coding FZD10 frizzled family receptor 10 O frizzled 10, seven transmembrane spanning receptor|frizzled homolog 10|frizzled-10 20121230 -9606 11212 PROSC - - HGNC:9457|MIM:604436|Ensembl:ENSG00000147471|HPRD:16060|Vega:OTTHUMG00000164024 8 8p11.2 proline synthetase co-transcribed homolog (bacterial) protein-coding PROSC proline synthetase co-transcribed homolog (bacterial) O proline synthase co-transcribed bacterial homolog protein|proline synthetase co-transcribed (bacterial homolog)|proline synthetase co-transcribed bacterial homolog protein 20121230 -9606 11213 IRAK3 - ASRT5|IRAKM HGNC:17020|MIM:604459|Ensembl:ENSG00000090376|HPRD:05123|Vega:OTTHUMG00000169002 12 12q14.3 interleukin-1 receptor-associated kinase 3 protein-coding IRAK3 interleukin-1 receptor-associated kinase 3 O IL-1 receptor-associated kinase M 20121230 -9606 11214 AKAP13 - AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 HGNC:371|MIM:604686|Ensembl:ENSG00000170776|HPRD:05253|Vega:OTTHUMG00000172205 15 15q24-q25 A kinase (PRKA) anchor protein 13 protein-coding AKAP13 A kinase (PRKA) anchor protein 13 O A-kinase anchor protein 13|A-kinase anchoring protein|LBC oncogene|breast cancer nuclear receptor-binding auxiliary protein|guanine nucleotide exchange factor Lbc|human thyroid-anchoring protein 31|lymphoid blast crisis oncogene|non-oncogenic Rho GTPase-specific GTP exchange factor|protein kinase A-anchoring protein 13 20121230 -9606 11215 AKAP11 - AKAP-11|AKAP220|PPP1R44|PRKA11 HGNC:369|MIM:604696|Ensembl:ENSG00000023516|HPRD:05261|Vega:OTTHUMG00000016805 13 13q14.11 A kinase (PRKA) anchor protein 11 protein-coding AKAP11 A kinase (PRKA) anchor protein 11 O A-kinase anchor protein 11|A-kinase anchor protein 220 kDa|A-kinase anchoring protein, 220kDa|a kinase anchor protein 220 kDa|protein kinase A anchoring protein 11|protein kinase A-anchoring protein 11|protein phosphatase 1, regulatory subunit 44 20121230 -9606 11216 AKAP10 - AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 HGNC:368|MIM:604694|Ensembl:ENSG00000108599|HPRD:05259|Vega:OTTHUMG00000059515 17 17p11.1 A kinase (PRKA) anchor protein 10 protein-coding AKAP10 A kinase (PRKA) anchor protein 10 O A-kinase anchor protein 10, mitochondrial|dual specificity A kinase-anchoring protein 2|mitochondrial A kinase PPKA anchor protein 10|protein kinase A anchoring protein 10 20121230 -9606 11217 AKAP2 RP11-470J20.3 AKAP-2|AKAPKL|PRKA2 HGNC:372|MIM:604582|Ensembl:ENSG00000241978|Vega:OTTHUMG00000156811 9 9q31.3 A kinase (PRKA) anchor protein 2 protein-coding AKAP2 A kinase (PRKA) anchor protein 2 O A-kinase anchor protein 2|protein kinase A anchoring protein 2|protein kinase A2 20121230 -9606 11218 DDX20 - DP103|GEMIN3 HGNC:2743|MIM:606168|Ensembl:ENSG00000064703|HPRD:05859|Vega:OTTHUMG00000011956 1 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 protein-coding DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 O DEAD box protein 20|DEAD box protein DP 103|DEAD-box protein DP103|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 20, 103kD|SMN-interacting protein|component of gems 3|gemin-3|probable ATP-dependent RNA helicase DDX20 20121230 -9606 11219 TREX2 - - HGNC:12270|MIM:300370|Ensembl:ENSG00000183479|HPRD:02299 X Xq28 three prime repair exonuclease 2 protein-coding TREX2 three prime repair exonuclease 2 O 3'-5' exonuclease TREX2 long form 20121230 -9606 11221 DUSP10 - MKP-5|MKP5 HGNC:3065|MIM:608867|Ensembl:ENSG00000143507|HPRD:12320|Vega:OTTHUMG00000037269 1 1q41 dual specificity phosphatase 10 protein-coding DUSP10 dual specificity phosphatase 10 O dual specificity phosphatase MKP-5|dual specificity protein phosphatase 10|map kinase phosphatase 5|mitogen-activated protein kinase phosphatase 5|serine/threonine specific protein phosphatase 20121230 -9606 11222 MRPL3 - COXPD9|MRL3|RPML3 HGNC:10379|MIM:607118|Ensembl:ENSG00000114686|HPRD:06175|Vega:OTTHUMG00000159607 3 3q21-q23 mitochondrial ribosomal protein L3 protein-coding MRPL3 mitochondrial ribosomal protein L3 O 39S ribosomal protein L3, mitochondrial|L3mt|MRP-L3|mitochondrial 60S ribosomal protein L3 20121230 -9606 11223 MST1L - BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9 HGNC:7390 1 1p36.13 macrophage stimulating 1-like protein-coding MST1L macrophage stimulating 1-like O brain rescue factor 1|brain-rescue-factor-1|macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 9|macrophage stimulating, pseudogene 7|macrophage stimulating, pseudogene 9|putative macrophage-stimulating protein MSTP9 20121230 -9606 11224 RPL35 RP11-175D17.6 L35 HGNC:10344|Ensembl:ENSG00000136942|HPRD:10200|Vega:OTTHUMG00000020659 9 9q34.1 ribosomal protein L35 protein-coding RPL35 ribosomal protein L35 O 60S ribosomal protein L35 20121230 -9606 11226 GALNT6 - GALNAC-T6|GalNAcT6 HGNC:4128|MIM:605148|Ensembl:ENSG00000139629|HPRD:05512 12 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) protein-coding GALNT6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) O GalNAc transferase 6|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 6|polypeptide GalNAc transferase 6|polypeptide N-acetylgalactosaminyltransferase 6|pp-GaNTase 6|protein-UDP acetylgalactosaminyltransferase 6 20121230 -9606 11227 GALNT5 - GALNAC-T5 HGNC:4127|Ensembl:ENSG00000136542|HPRD:09970|Vega:OTTHUMG00000131965 2 2q24.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) protein-coding GALNT5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) O UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5|polypeptide GalNAc transferase 5|polypeptide N-acetylgalactosaminyltransferase 5|pp-GaNTase 5|protein-UDP acetylgalactosaminyltransferase 5 20121230 -9606 11228 RASSF8 - C12orf2|HOJ1 HGNC:13232|MIM:608231|Ensembl:ENSG00000123094|HPRD:07084|Vega:OTTHUMG00000169087 12 12p12.3 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 protein-coding RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 O carcinoma-associated protein HOJ-1|ras association domain-containing protein 8 20121230 -9606 11230 PRAF2 JM4 - HGNC:28911|MIM:300840|Ensembl:ENSG00000243279|HPRD:06596|Vega:OTTHUMG00000034499 X Xp11.23 PRA1 domain family, member 2 protein-coding PRAF2 PRA1 domain family, member 2 O Jena-Muenchen 4|PRA1 domain family 2|PRA1 family protein 2 20121230 -9606 11231 SEC63 RP1-191J18.4 DNAJC23|ERdj2|PRO2507|SEC63L HGNC:21082|MIM:608648|Ensembl:ENSG00000025796|HPRD:09783|Vega:OTTHUMG00000015316 6 6q21 SEC63 homolog (S. cerevisiae) protein-coding SEC63 SEC63 homolog (S. cerevisiae) O translocation protein SEC63 homolog 20121230 -9606 11232 POLG2 - HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB HGNC:9180|MIM:604983|Ensembl:ENSG00000256525|HPRD:09228|Vega:OTTHUMG00000178899 17 17q polymerase (DNA directed), gamma 2, accessory subunit protein-coding POLG2 polymerase (DNA directed), gamma 2, accessory subunit O DNA polymerase gamma accessory 55 kDa subunit|DNA polymerase subunit gamma-2, mitochondrial|mitochondrial DNA polymerase accessory subunit|mitochondrial DNA polymerase subunit gamma-2|mitochondrial DNA polymerase, accessory subunit|p55 20121230 -9606 11234 HPS5 - AIBP63 HGNC:17022|MIM:607521|Ensembl:ENSG00000110756|HPRD:07395|Vega:OTTHUMG00000166612 11 11p14 Hermansky-Pudlak syndrome 5 protein-coding HPS5 Hermansky-Pudlak syndrome 5 O Hermansky-Pudlak syndrome 5 protein|alpha integrin binding protein 63|alpha-integrin-binding protein 63|ruby-eye protein 2 homolog 20121230 -9606 11235 PDCD10 - CCM3|TFAR15 HGNC:8761|MIM:609118|Ensembl:ENSG00000114209|HPRD:10141|Vega:OTTHUMG00000158415 3 3q26.1 programmed cell death 10 protein-coding PDCD10 programmed cell death 10 O TF-1 cell apoptosis-related protein 15|apoptosis-related protein 15|cerebral cavernous malformations 3 protein|programmed cell death protein 10 20121230 -9606 11236 RNF139 - HRCA1|RCA1|TRC8 HGNC:17023|MIM:603046|Ensembl:ENSG00000170881|HPRD:04333|Vega:OTTHUMG00000165072 8 8q24 ring finger protein 139 protein-coding RNF139 ring finger protein 139 O E3 ubiquitin-protein ligase RNF139|multiple membrane spanning receptor TRC8|patched related protein translocated in renal cancer|translocation in renal carcinoma on chromosome 8 protein 20121230 -9606 11237 RNF24 - G1L HGNC:13779|MIM:612489|Ensembl:ENSG00000101236|HPRD:10198|Vega:OTTHUMG00000031770 20 20p13 ring finger protein 24 protein-coding RNF24 ring finger protein 24 O RING finger protein 24|goliath-like protein (C3HC4 type) 20121230 -9606 11238 CA5B - CA-VB HGNC:1378|MIM:300230|Ensembl:ENSG00000169239|HPRD:02207|Vega:OTTHUMG00000021183 X Xp21.1 carbonic anhydrase VB, mitochondrial protein-coding CA5B carbonic anhydrase VB, mitochondrial O carbonate dehydratase VB|carbonic anhydrase 5B, mitochondrial|carbonic dehydratase 20121230 -9606 11240 PADI2 RP1-37C10.6 PAD-H19|PAD2|PDI2 HGNC:18341|MIM:607935|Ensembl:ENSG00000117115|HPRD:06396|Vega:OTTHUMG00000002295 1 1p36.13 peptidyl arginine deiminase, type II protein-coding PADI2 peptidyl arginine deiminase, type II O peptidlyarginine deiminase type II|peptidylarginine deiminase II|protein arginine deiminase|protein-arginine deiminase type II|protein-arginine deiminase type-2 20121230 -9606 11243 PMF1 RP11-54H19.4 - HGNC:9112|MIM:609176|Ensembl:ENSG00000160783|HPRD:11441|Vega:OTTHUMG00000014817|Vega:OTTHUMG00000177123 1 1q12 polyamine-modulated factor 1 protein-coding PMF1 polyamine-modulated factor 1 O Est1p-like protein B (EST1B) 20121230 -9606 11244 ZHX1 - - HGNC:12871|MIM:604764|Ensembl:ENSG00000165156|HPRD:10379|Vega:OTTHUMG00000165088 8 8q24.13 zinc fingers and homeoboxes 1 protein-coding ZHX1 zinc fingers and homeoboxes 1 O zinc finger and homeodomain protein 1|zinc fingers and homeobox 1|zinc fingers and homeoboxes protein 1 20121230 -9606 11245 GPR176 - HB-954 HGNC:32370|MIM:612183|Ensembl:ENSG00000166073|HPRD:13597|Vega:OTTHUMG00000129873 15 15q14-q15.1 G protein-coupled receptor 176 protein-coding GPR176 G protein-coupled receptor 176 O probable G-protein coupled receptor 176 20121230 -9606 11247 NXPH4 UNQ1928/PRO4403 NPH4 HGNC:8078|MIM:604637|Ensembl:ENSG00000182379|HPRD:06866|Vega:OTTHUMG00000171241 12 12q13.3 neurexophilin 4 protein-coding NXPH4 neurexophilin 4 O neurexophilin-4 20121230 -9606 11248 NXPH3 UNQ687/PRO1327 NPH3 HGNC:8077|MIM:604636|Ensembl:ENSG00000182575|HPRD:06865|Vega:OTTHUMG00000161491 17 17q21.33 neurexophilin 3 protein-coding NXPH3 neurexophilin 3 O neurexophilin-3 20121230 -9606 11249 NXPH2 - NPH2 HGNC:8076|MIM:604635|Ensembl:ENSG00000144227|HPRD:11983|Vega:OTTHUMG00000153636 2 2q22.1 neurexophilin 2 protein-coding NXPH2 neurexophilin 2 O neurexophilin-2 20121230 -9606 11250 GPR45 - PSP24|PSP24(ALPHA)|PSP24A HGNC:4503|MIM:604838|Ensembl:ENSG00000135973|HPRD:05325|Vega:OTTHUMG00000130805 2 2q11.1-q12 G protein-coupled receptor 45 protein-coding GPR45 G protein-coupled receptor 45 O PSP24-1|PSP24-alpha|high-affinity lysophosphatidic acid receptor|probable G-protein coupled receptor 45 20121230 -9606 11251 PTGDR2 - CD294|CRTH2|DL1R|DP2|GPR44 HGNC:4502|MIM:604837|Ensembl:ENSG00000183134|HPRD:16075|Vega:OTTHUMG00000167796 11 11q12-q13.3 prostaglandin D2 receptor 2 protein-coding PTGDR2 prostaglandin D2 receptor 2 O G protein-coupled receptor 44|G-protein coupled receptor 44|chemoattractant receptor homologous molecule expressed on T helper type 2 cells|chemoattractant receptor-homologous molecule expressed on TH2 cells|putative G-protein coupled receptor 44 20121230 -9606 11252 PACSIN2 AL049758.1 SDPII HGNC:8571|MIM:604960|Ensembl:ENSG00000100266|HPRD:05390|Vega:OTTHUMG00000150701 22 22q13.2-q13.33 protein kinase C and casein kinase substrate in neurons 2 protein-coding PACSIN2 protein kinase C and casein kinase substrate in neurons 2 O cytoplasmic phosphoprotein PACSIN2|protein kinase C and casein kinase substrate in neurons protein 2|syndapin II 20121230 -9606 11253 MAN1B1 RP11-350O14.2 ERMAN1|MANA-ER|MRT15 HGNC:6823|MIM:604346|Ensembl:ENSG00000177239|HPRD:05068|Vega:OTTHUMG00000020978 9 9q34 mannosidase, alpha, class 1B, member 1 protein-coding MAN1B1 mannosidase, alpha, class 1B, member 1 O ER alpha 1,2-mannosidase|Man9GlcNAc2-specific processing alpha-mannosidase|endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase|endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase 1 20121230 -9606 11254 SLC6A14 RP3-452H17.1 BMIQ11 HGNC:11047|MIM:300444|Ensembl:ENSG00000087916|HPRD:02344|Vega:OTTHUMG00000022245 X Xq23 solute carrier family 6 (amino acid transporter), member 14 protein-coding SLC6A14 solute carrier family 6 (amino acid transporter), member 14 O amino acid transporter ATB0+|amino acid transporter B0+|sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)|solute carrier family 6 (neurotransmitter transporter), member 14|solute carrier family 6 member 14 20121230 -9606 11255 HRH3 - GPCR97|HH3R HGNC:5184|MIM:604525|Ensembl:ENSG00000101180|Vega:OTTHUMG00000032899 20 20q13.33 histamine receptor H3 protein-coding HRH3 histamine receptor H3 O G protein-coupled receptor 97|G-protein coupled receptor 97|H3R|histamine H3 receptor 20121230 -9606 11257 TP53TG1 - LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 HGNC:17026|HPRD:10276 7 7q21.1 TP53 target 1 (non-protein coding) miscRNA TP53TG1 TP53 target 1 (non-protein coding) O - 20121230 -9606 11258 DCTN3 RP11-296L22.3 DCTN-22|DCTN22 HGNC:2713|MIM:607387|Ensembl:ENSG00000137100|HPRD:06303|Vega:OTTHUMG00000019830 9 9p13 dynactin 3 (p22) protein-coding DCTN3 dynactin 3 (p22) O dynactin 3|dynactin complex subunit 22 kDa subunit|dynactin light chain|dynactin subunit 3|p22 20121230 -9606 11259 FILIP1L - DOC-1|DOC1|GIP130|GIP130a|GIP130b|GIP130c|GIP90 HGNC:24589|MIM:612993|Ensembl:ENSG00000168386|HPRD:16832|Vega:OTTHUMG00000159055 3 3q12.1 filamin A interacting protein 1-like protein-coding FILIP1L filamin A interacting protein 1-like O 130 kDa GPBP-interacting protein|90 kDa GPBP-interacting protein|GPBP-interacting protein 90|GPBP-interacting protein of 130 kDa|downregulated in ovarian cancer 1 81 kDa isoform|filamin A-interacting protein 1-like|protein down-regulated in ovarian cancer 1 20121230 -9606 11260 XPOT - XPO3 HGNC:12826|MIM:603180|Ensembl:ENSG00000184575|HPRD:04418|Vega:OTTHUMG00000168794 12 12q14.2 exportin, tRNA protein-coding XPOT exportin, tRNA O exportin(tRNA)|exportin, tRNA (nuclear export receptor for tRNAs)|exportin-T|tRNA exportin 20121230 -9606 11261 CHP1 - CHP|SLC9A1BP|Sid470p|p22|p24 HGNC:17433|MIM:606988|Ensembl:ENSG00000187446|HPRD:06101|Vega:OTTHUMG00000130233 15 15q13.3 calcineurin-like EF hand protein 1 protein-coding CHP1 calcineurin-like EF hand protein 1 O EF-hand calcium-binding domain-containing protein p22|SLC9A1 binding protein|calcineurin B homolog|calcineurin B homologous protein 1|calcineurin B-like protein|calcineurin homologous protein|calcium binding protein P22|calcium-binding protein CHP|calcium-binding protein p22 20121230 -9606 11262 SP140 - LYSP100|LYSP100-A|LYSP100-B HGNC:17133|MIM:608602|Ensembl:ENSG00000079263|HPRD:09780|Vega:OTTHUMG00000153670 2 2q37.1 SP140 nuclear body protein protein-coding SP140 SP140 nuclear body protein O lymphoid-restricted homolog of Sp100|lymphoid-specific SP100 homolog|nuclear autoantigen Sp-140|nuclear body protein SP140|speckled 140 kDa 20121230 -9606 11264 PXMP4 RP4-553F4.4 PMP24 HGNC:15920|Ensembl:ENSG00000101417|HPRD:10177|Vega:OTTHUMG00000032273 20 20q11.22 peroxisomal membrane protein 4, 24kDa protein-coding PXMP4 peroxisomal membrane protein 4, 24kDa O 24 kDa peroxisomal intrinsic membrane protein|peroxisomal membrane protein 4 20121230 -9606 11266 DUSP12 - DUSP1|YVH1 HGNC:3067|MIM:604835|Ensembl:ENSG00000081721|HPRD:05323|Vega:OTTHUMG00000034540 1 1q21-q22 dual specificity phosphatase 12 protein-coding DUSP12 dual specificity phosphatase 12 O YVH1 protein-tyrosine phosphatase ortholog|dual specificity protein phosphatase 12|dual specificity tyrosine phosphatase YVH1|serine/threonine specific protein phosphatase 20121230 -9606 11267 SNF8 - Dot3|EAP30|VPS22 HGNC:17028|MIM:610904|Ensembl:ENSG00000159210|HPRD:16847|Vega:OTTHUMG00000160569 17 17q21.32 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) protein-coding SNF8 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) O EAP30 subunit of ELL complex|ELL-associated protein of 30 kDa|ESCRT-II complex subunit VPS22|hVps22|vacuolar-sorting protein SNF8 20121230 -9606 11269 DDX19B - DBP5|DDX19|RNAh HGNC:2742|MIM:605812|Ensembl:ENSG00000157349|HPRD:05781|Vega:OTTHUMG00000137577 16 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B protein-coding DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B O ATP-dependent RNA helicase DDX19|ATP-dependent RNA helicase DDX19B|DEAD (Asp-Glu-Ala-As) box polypeptide 19B|DEAD box RNA helicase DEAD5|DEAD box protein 19B|DEAD-box RNA helicase DEAD5|DEAD-box protein 5|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (Dbp5, yeast, homolog)|yeast Dbp5 homolog 20121230 -9606 11270 NRM DAAP-285E11.8 NRM29 HGNC:8003|Ensembl:ENSG00000137404|HPRD:10120|Vega:OTTHUMG00000031223 6 6p21.33 nurim (nuclear envelope membrane protein) protein-coding NRM nurim (nuclear envelope membrane protein) O nuclear rim protein|nurim 20121230 -9606 11272 PRR4 - LPRP|PROL4 HGNC:18020|MIM:605359|Ensembl:ENSG00000111215|HPRD:09248|Vega:OTTHUMG00000168522 12 12p13 proline rich 4 (lacrimal) protein-coding PRR4 proline rich 4 (lacrimal) O lacrimal proline-rich protein|nasopharyngeal carcinoma-associated proline-rich protein 4|proline-rich polypeptide 4|proline-rich protein 4 20121230 -9606 11273 ATXN2L - A2D|A2LG|A2LP|A2RP HGNC:31326|MIM:607931|Ensembl:ENSG00000168488|HPRD:06394|Vega:OTTHUMG00000097038 16 16p11 ataxin 2-like protein-coding ATXN2L ataxin 2-like O ataxin 2 related protein|ataxin-2 domain protein|ataxin-2-like protein|ataxin-2-related protein 20121230 -9606 11274 USP18 - ISG43|UBP43 HGNC:12616|MIM:607057|Ensembl:ENSG00000184979|HPRD:06136|Vega:OTTHUMG00000150104 22 22q11.21 ubiquitin specific peptidase 18 protein-coding USP18 ubiquitin specific peptidase 18 O 43 kDa ISG15-specific protease|ISG15-specific-processing protease|hUBP43|ubiquitin specific protease 18|ubl carboxyl-terminal hydrolase 18|ubl thioesterase 18|ubl thiolesterase 18 20121230 -9606 11275 KLHL2 - ABP-KELCH|MAV|MAYVEN HGNC:6353|MIM:605774|Ensembl:ENSG00000109466|HPRD:09311|Vega:OTTHUMG00000161294 4 4q21.2 kelch-like 2, Mayven (Drosophila) protein-coding KLHL2 kelch-like 2, Mayven (Drosophila) O actin-binding protein Mayven|kelch|kelch-like protein 2 20121230 -9606 11276 SYNRG - AP1GBP1|SYNG HGNC:557|MIM:607291|Ensembl:ENSG00000006114|HPRD:06291|Vega:OTTHUMG00000133125 17 17q12 synergin, gamma protein-coding SYNRG synergin, gamma O AP1 gamma subunit binding protein 1|AP1 subunit gamma-binding protein 1|adaptor-related protein complex 1 gamma subunit-binding protein 1|gamma-synergin|synergin gamma 20121230 -9606 11277 TREX1 - AGS1|CRV|DRN3|HERNS HGNC:12269|MIM:606609|Ensembl:ENSG00000213689|HPRD:09423|Vega:OTTHUMG00000156205 3 3p21.31 three prime repair exonuclease 1 protein-coding TREX1 three prime repair exonuclease 1 O 3' repair exonuclease 1|3'-5' exonuclease TREX1|DNase III|deoxyribonuclease III 20121230 -9606 11278 KLF12 HSPC122 AP-2rep|AP2REP HGNC:6346|MIM:607531|Ensembl:ENSG00000118922|HPRD:06336|Vega:OTTHUMG00000017078 13 13q22 Kruppel-like factor 12 protein-coding KLF12 Kruppel-like factor 12 O AP-2 repressor|AP-2rep transcription factor|KLF12 zinc finger transcriptional repressor|Krueppel-like factor 12|transcriptional repressor AP-2rep 20121230 -9606 11279 KLF8 RP13-1021K9.1 BKLF3|ZNF741 HGNC:6351|MIM:300286|Ensembl:ENSG00000102349|HPRD:02238|Vega:OTTHUMG00000021666 X Xp11.21 Kruppel-like factor 8 protein-coding KLF8 Kruppel-like factor 8 O Krueppel-like factor 8|basic krueppel-like factor 3|basic kruppel-like factor 3|zinc finger protein 741 20121230 -9606 11280 SCN11A - NAV1.9|NaN|SCN12A|SNS-2 HGNC:10583|MIM:604385|Ensembl:ENSG00000168356|HPRD:05090|Vega:OTTHUMG00000048246 3 3p22.2 sodium channel, voltage-gated, type XI, alpha subunit protein-coding SCN11A sodium channel, voltage-gated, type XI, alpha subunit O PN5|hNaN|peripheral nerve sodium channel 5|sensory neuron sodium channel 2|sodium channel protein type 11 subunit alpha|sodium channel protein type XI subunit alpha|sodium channel, voltage-gated, type XI, alpha polypeptide|sodium channel, voltage-gated, type XII, alpha polypeptide|voltage-gated sodium channel Nav1.9|voltage-gated sodium channel subunit alpha Nav1.9 20121230 -9606 11281 POU6F2 - RPF-1|WT5|WTSL HGNC:21694|MIM:609062|Ensembl:ENSG00000106536|HPRD:10162|Vega:OTTHUMG00000150803 7 7p14.1 POU class 6 homeobox 2 protein-coding POU6F2 POU class 6 homeobox 2 O POU domain, class 6, transcription factor 2|Wilms tumor suppressor locus|retina-derived POU domain factor 1|retina-derived POU-domain factor-1 20121230 -9606 11282 MGAT4B UNQ906/PRO1927 GNT-IV|GNT-IVB HGNC:7048|MIM:604561|Ensembl:ENSG00000161013|HPRD:05190|Vega:OTTHUMG00000130912 5 5q35 mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B protein-coding MGAT4B mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B O N-acetylglucosaminyltransferase IVb|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVb|UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IV|UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IVb|alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B|alpha-1,3-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase|aminyltransferase|glcNAc-T IVb|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isoenzyme B 20121230 -9606 11283 CYP4F8 - CPF8|CYPIVF8 HGNC:2648|MIM:611545|HPRD:08518 19 19p13.1 cytochrome P450, family 4, subfamily F, polypeptide 8 protein-coding CYP4F8 cytochrome P450, family 4, subfamily F, polypeptide 8 O cytochrome P450 4F8|cytochrome P450, subfamily IVF, polypeptide 8|flavoprotein-linked monooxygenase|microsomal monooxygenase 20121230 -9606 11284 PNKP - EIEE10|MCSZ|PNK HGNC:9154|MIM:605610|Ensembl:ENSG00000039650|HPRD:09284 19 19q13.3-q13.4 polynucleotide kinase 3'-phosphatase protein-coding PNKP polynucleotide kinase 3'-phosphatase O DNA 5'-kinase/3'-phosphatase|Homo sapiens polynucleotide kinase 3'-phosphatase (PNKP)|bifunctional polynucleotide phosphatase/kinase 20121230 -9606 11285 B4GALT7 UNQ748/PRO1478 XGALT1|XGPT1 HGNC:930|MIM:604327|Ensembl:ENSG00000027847|HPRD:05060|Vega:OTTHUMG00000130851 5 5q35.2-q35.3 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 protein-coding B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 O UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 7|UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 7|beta-1,4-GalTase 7|beta-1,4-galactosyltransferase 7|beta-1,4-galactosyltransferase VII|beta4Gal-T7|beta4GalT-VII|galactosyltransferase I|proteoglycan UDP-galactose:beta-xylose beta1,4-galactosyltransferase I 20121230 -9606 11309 SLCO2B1 - OATP-B|OATP2B1|OATPB|SLC21A9 HGNC:10962|MIM:604988|Ensembl:ENSG00000137491|HPRD:07061|Vega:OTTHUMG00000165420 11 11q13 solute carrier organic anion transporter family, member 2B1 protein-coding SLCO2B1 solute carrier organic anion transporter family, member 2B1 O OATP-RP2|organic anion transporter B|organic anion transporter polypeptide-related protein 2|solute carrier family 21 (organic anion transporter), member 9|solute carrier organic anion transporter family member 2B1 20121230 -9606 11311 VPS45 RP11-458I7.2 H1|H1VPS45|VPS45A|VPS45B|VPS54A|VSP45|VSP45A HGNC:14579|MIM:610035|Ensembl:ENSG00000136631|HPRD:10301|Vega:OTTHUMG00000012511 1 1q21.2 vacuolar protein sorting 45 homolog (S. cerevisiae) protein-coding VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) O hlVps45|leucocyte vacuolar protein sorting 45|vacuolar protein sorting 45A|vacuolar protein sorting-associated protein 45 20121230 -9606 11313 LYPLA2 RP5-886K2.5 APT-2|DJ886K2.4 HGNC:6738|Ensembl:ENSG00000011009|HPRD:07127|Vega:OTTHUMG00000002961 1 1p36.11 lysophospholipase II protein-coding LYPLA2 lysophospholipase II O LPL-II|acyl-protein thioesterase 2|lysoPLA II 20121230 -9606 11314 CD300A - CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 HGNC:19319|MIM:606790|Ensembl:ENSG00000167851|HPRD:09492|Vega:OTTHUMG00000067612 17 17q25.1 CD300a molecule protein-coding CD300A CD300a molecule O CD300 antigen-like family member A|CD300a antigen|CMRF35-like molecule 8|CMRF35H leukocyte immunoglobulin-like receptor|NK inhibitory receptor|immunoglobulin superfamily member 12|inhibitory receptor protein 60|leukocyte membrane antigen 20121230 -9606 11315 PARK7 CTA-215D11.1 DJ-1|DJ1 HGNC:16369|MIM:602533|Ensembl:ENSG00000116288|HPRD:03961|Vega:OTTHUMG00000001210 1 1p36.23 parkinson protein 7 protein-coding PARK7 parkinson protein 7 O Parkinson disease (autosomal recessive, early onset) 7|oncogene DJ1|protein DJ-1 20121230 -9606 11316 COPE - epsilon-COP HGNC:2234|MIM:606942|Ensembl:ENSG00000105669|HPRD:06089 19 19p13.11 coatomer protein complex, subunit epsilon protein-coding COPE coatomer protein complex, subunit epsilon O coatomer epsilon subunit|coatomer subunit epsilon|epsilon coat protein|epsilon-coat protein 20121230 -9606 11317 RBPJL RP3-453C12.2 RBP-L|RBPSUHL|SUH|SUHL HGNC:13761|Ensembl:ENSG00000124232|HPRD:10187|Vega:OTTHUMG00000033055 20 20q12-q13.1 recombination signal binding protein for immunoglobulin kappa J region-like protein-coding RBPJL recombination signal binding protein for immunoglobulin kappa J region-like O recombining binding protein suppressor of hairless-like protein|transcription factor RBP-L 20121230 -9606 11318 GPR182 - 7TMR|ADMR|AM-R|AMR|G10D|gamrh|hrhAMR HGNC:13708|MIM:605307|Ensembl:ENSG00000166856|HPRD:05605|Vega:OTTHUMG00000171005 12 12q13.3 G protein-coupled receptor 182 protein-coding GPR182 G protein-coupled receptor 182 O G-protein coupled receptor 182|adrenomedullin receptor 20121230 -9606 11319 ECD - GCR2|HSGT1 HGNC:17029|Ensembl:ENSG00000122882|HPRD:11032|Vega:OTTHUMG00000018451 10 10q22.3 ecdysoneless homolog (Drosophila) protein-coding ECD ecdysoneless homolog (Drosophila) O protein SGT1|protein ecdysoneless homolog|suppressor of GCR2|suppressor of S. cerevisiae gcr2 20121230 -9606 11320 MGAT4A - GNT-IV|GNT-IVA|GnT-4a HGNC:7047|MIM:604623|Ensembl:ENSG00000071073|HPRD:06860|Vega:OTTHUMG00000130563 2 2q12 mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A O N-acetylglucosaminyltransferase IVa|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVa|UDP-GlcNAc:a-1,3-D-mannoside b-1,4-acetylglucosaminyltransferase IV|UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IVa|UDP-N-acetylglucosamine:alpha1,3-d-mannoside beta1,4-N-acetylglucosaminyltransferase|alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A|alpha-1,3-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase|glcNAc-T IVa|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isoenzyme A 20121230 -9606 11321 GPN1 HUSSY-23 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 HGNC:17030|MIM:611479|Ensembl:ENSG00000198522|HPRD:10308|Vega:OTTHUMG00000097784 2 2p23.3 GPN-loop GTPase 1 protein-coding GPN1 GPN-loop GTPase 1 O ATP(GTP)-binding protein|MBD2-interacting protein|RNA polymerase II associated protein 4|XPA binding protein 1, GTPase 20121230 -9606 11322 TMC6 - EV1|EVER1|EVIN1|LAK-4P HGNC:18021|MIM:605828|Ensembl:ENSG00000141524|HPRD:08386|Vega:OTTHUMG00000177466 17 17q25.3 transmembrane channel-like 6 protein-coding TMC6 transmembrane channel-like 6 O epidermodysplasia verruciformis 1|epidermodysplasia verruciformis protein 1|expressed in activated T/LAK lymphocytes|protein LAK-4|transmembrane channel-like protein 6 20121230 -9606 11325 DDX42 - RHELP|RNAHP|SF3b125 HGNC:18676|MIM:613369|Ensembl:ENSG00000198231|HPRD:09909|Vega:OTTHUMG00000179011 17 17q23.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 protein-coding DDX42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 O ATP-dependent RNA helicase DDX42|DEAD box protein 42|RNA helicase-like protein|RNA helicase-related protein|SF3b DEAD box protein|SF3b125 DEAD-box protein|splicing factor 3B-associated 125 kDa protein 20121230 -9606 11326 VSIG4 RP6-159A1.1 CRIg|Z39IG HGNC:17032|MIM:300353|Ensembl:ENSG00000155659|HPRD:02286|Vega:OTTHUMG00000021727 X Xq12-q13.3 V-set and immunoglobulin domain containing 4 protein-coding VSIG4 V-set and immunoglobulin domain containing 4 O Ig superfamily protein|V-set and immunoglobulin domain-containing protein 4|complement receptor of the immunoglobulin superfamily|protein Z39Ig 20121230 -9606 11328 FKBP9 tcag7.1121 FKBP60|FKBP63|PPIase HGNC:3725|Ensembl:ENSG00000122642|HPRD:06510|Vega:OTTHUMG00000097847 7 7p11.1 FK506 binding protein 9, 63 kDa protein-coding FKBP9 FK506 binding protein 9, 63 kDa O 63 kDa FK506-binding protein|63 kDa FKBP|FK506-binding protein 9|FKBP-63|FKBP-9|PPIase FKBP9|peptidyl-prolyl cis-trans isomerase FKBP9|rotamase 20121230 -9606 11329 STK38 - NDR|NDR1 HGNC:17847|MIM:606964|Ensembl:ENSG00000112079|HPRD:09511|Vega:OTTHUMG00000014598 6 6p21 serine/threonine kinase 38 protein-coding STK38 serine/threonine kinase 38 O NDR1 protein kinase|Ndr Ser/Thr kinase-like protein|nuclear Dbf2-related 1|nuclear Dbf2-related kinase 1|serine threonine protein kinase|serine/threonine-protein kinase 38 20121230 -9606 11330 CTRC - CLCR|ELA4 HGNC:2523|MIM:601405|Ensembl:ENSG00000162438|HPRD:03242|Vega:OTTHUMG00000002255 1 1p36.21 chymotrypsin C (caldecrin) protein-coding CTRC chymotrypsin C (caldecrin) O caldecrin|chymotrypsin-C|elastase 4|elastase IV|serum calcium decreasing factor 20121230 -9606 11331 PHB2 - BAP|BCAP37|Bap37|PNAS-141|REA|p22 HGNC:30306|MIM:610704|Ensembl:ENSG00000215021|HPRD:17843|Vega:OTTHUMG00000168519 12 12p13 prohibitin 2 protein-coding PHB2 prohibitin 2 O B-cell associated protein|B-cell receptor-associated protein BAP37|D-prohibitin|prohibitin-2|repressor of estrogen receptor activity 20121230 -9606 11332 ACOT7 RP1-120G22.10-004 ACH1|ACT|BACH|CTE-II|LACH|LACH1|RP1-120G22.10|hBACH HGNC:24157|MIM:602587|Ensembl:ENSG00000097021|HPRD:12517|Vega:OTTHUMG00000001295 1 1p36 acyl-CoA thioesterase 7 protein-coding ACOT7 acyl-CoA thioesterase 7 O CTE-IIa|acyl-CoA thioesterase 2|acyl-CoA thioesterase, long chain|brain acyl CoA hydrolase|brain acyl-CoA hydrolase|cytosolic acyl coenzyme A thioester hydrolase|long chain acyl-CoA thioester hydrolase 20121230 -9606 11333 PDAP1 - HASPP28|PAP|PAP1 HGNC:14634|MIM:607075|Ensembl:ENSG00000106244|HPRD:06149|Vega:OTTHUMG00000154629 7 7q22.1 PDGFA associated protein 1 protein-coding PDAP1 PDGFA associated protein 1 O 28 kDa heat- and acid-stable phosphoprotein|PDGF-associated protein 20121230 -9606 11334 TUSC2 - C3orf11|FUS1|PAP|PDAP2 HGNC:17034|MIM:607052|Ensembl:ENSG00000114383|HPRD:06134|Vega:OTTHUMG00000156877 3 3p21.3 tumor suppressor candidate 2 protein-coding TUSC2 tumor suppressor candidate 2 O PDGFA associated protein 2|PDGFA-associated protein 2|fus-1 protein|fusion 1 protein 20121230 -9606 11335 CBX3 - HECH|HP1-GAMMA|HP1Hs-gamma HGNC:1553|MIM:604477|Ensembl:ENSG00000122565|HPRD:05130|Vega:OTTHUMG00000022911 7 7p15.2 chromobox homolog 3 protein-coding CBX3 chromobox homolog 3 O HP1 gamma homolog|chromobox homolog 3 (HP1 gamma homolog, Drosophila)|chromobox protein homolog 3|heterochromatin protein 1 homolog gamma|heterochromatin protein HP1 gamma|heterochromatin-like protein 1|modifier 2 protein 20121230 -9606 11336 EXOC3 - SEC6|SEC6L1|Sec6p HGNC:30378|MIM:608186|Ensembl:ENSG00000180104|HPRD:09738|Vega:OTTHUMG00000162205 5 5p15.33 exocyst complex component 3 protein-coding EXOC3 exocyst complex component 3 O SEC6-like 1|Sec 6 homolog|exocyst complex component Sec6 20121230 -9606 11337 GABARAP HT004 ATG8A|GABARAP-a|MM46 HGNC:4067|MIM:605125|Ensembl:ENSG00000170296|HPRD:05496|Vega:OTTHUMG00000102156 17 17p13.1 GABA(A) receptor-associated protein protein-coding GABARAP GABA(A) receptor-associated protein O gamma-aminobutyric acid receptor-associated protein 20121230 -9606 11338 U2AF2 - U2AF65 HGNC:23156|MIM:191318|Ensembl:ENSG00000063244|HPRD:01872|Vega:OTTHUMG00000180908 19 19q13.42 U2 small nuclear RNA auxiliary factor 2 protein-coding U2AF2 U2 small nuclear RNA auxiliary factor 2 O U2 (RNU2) small nuclear RNA auxiliary factor 2|U2 auxiliary factor 65 kDa subunit|U2 small nuclear ribonucleoprotein auxiliary factor (65kD)|U2 snRNP auxiliary factor large subunit|hU2AF65|splicing factor U2AF 65 kDa subunit 20121230 -9606 11339 OIP5 - 5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta HGNC:20300|MIM:606020|Ensembl:ENSG00000104147|HPRD:09352|Vega:OTTHUMG00000130251 15 15q15.1 Opa interacting protein 5 protein-coding OIP5 Opa interacting protein 5 O LAP2alpha interactor-25|MIS18 kinetochore protein homolog B|OIP-5|cancer/testis antigen 86|opa-interacting protein 5|protein Mis18-beta 20121230 -9606 11340 EXOSC8 - CIP3|EAP2|OIP2|RP11-421P11.3|RRP43|Rrp43p|bA421P11.3|p9 HGNC:17035|MIM:606019|Ensembl:ENSG00000120699|HPRD:09351|Vega:OTTHUMG00000016742 13 13q13.1 exosome component 8 protein-coding EXOSC8 exosome component 8 O CBP-interacting protein 3|OIP-2|Opa interacting protein 2|exosome complex component RRP43|exosome complex exonuclease RRP43|opa-interacting protein 2|ribosomal RNA-processing protein 43 20121230 -9606 11341 SCRG1 UNQ390/PRO725 SCRG-1 HGNC:17036|MIM:603163|Ensembl:ENSG00000164106|HPRD:11932|Vega:OTTHUMG00000161249 4 4q34.1 stimulator of chondrogenesis 1 protein-coding SCRG1 stimulator of chondrogenesis 1 O scrapie responsive gene 1|scrapie responsive protein 1|scrapie-responsive gene 1 protein|scrapie-responsive protein 1 20121230 -9606 11342 RNF13 - RZF HGNC:10057|MIM:609247|Ensembl:ENSG00000082996|HPRD:11503|Vega:OTTHUMG00000150338 3 3q25.1 ring finger protein 13 protein-coding RNF13 ring finger protein 13 O E3 ubiquitin-protein ligase RNF13|RING zinc finger protein 20121230 -9606 11343 MGLL - HU-K5|HUK5|MAGL|MGL HGNC:17038|MIM:609699|Ensembl:ENSG00000074416|HPRD:17574|Vega:OTTHUMG00000159641 3 3q21.3 monoglyceride lipase protein-coding MGLL monoglyceride lipase O lysophospholipase homolog|monoacylglycerol lipase 20121230 -9606 11344 TWF2 MSTP011 A6RP|A6r|PTK9L HGNC:9621|MIM:607433|Ensembl:ENSG00000247596|HPRD:08464|Vega:OTTHUMG00000158105 3 3p21.1 twinfilin, actin-binding protein, homolog 2 (Drosophila) protein-coding TWF2 twinfilin, actin-binding protein, homolog 2 (Drosophila) O A6-related protein|PTK9L protein tyrosine kinase 9-like (A6-related protein)|protein tyrosine kinase 9-like (A6-related protein)|twinfilin-1-like protein|twinfilin-2 20121230 -9606 11345 GABARAPL2 - ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 HGNC:13291|MIM:607452|Ensembl:ENSG00000034713|HPRD:16246|Vega:OTTHUMG00000137613 16 16q22.1 GABA(A) receptor-associated protein-like 2 protein-coding GABARAPL2 GABA(A) receptor-associated protein-like 2 O MAP1 light chain 3 related protein|MAP1 light chain 3-related protein|gamma-aminobutyric acid receptor-associated protein-like 2|ganglioside expression factor 2|general protein transport factor p16|golgi-associated ATPase enhancer of 16 kDa 20121230 -9606 11346 SYNPO - - HGNC:30672|MIM:608155|Ensembl:ENSG00000171992|HPRD:12179|Vega:OTTHUMG00000130078 5 5q33.1 synaptopodin protein-coding SYNPO synaptopodin O - 20121230 -9606 22794 CASC3 - BTZ|MLN51 HGNC:17040|MIM:606504|Ensembl:ENSG00000108349|HPRD:16225|Vega:OTTHUMG00000133323 17 17q21.1 cancer susceptibility candidate 3 protein-coding CASC3 cancer susceptibility candidate 3 O MLN 51|barentsz|cancer susceptibility candidate gene 3 protein|metastatic lymph node 51|metastatic lymph node gene 51 protein|protein CASC3|protein barentsz 20121230 -9606 22795 NID2 - NID-2 HGNC:13389|MIM:605399|Ensembl:ENSG00000087303|HPRD:05654|Vega:OTTHUMG00000140298 14 14q22.1 nidogen 2 (osteonidogen) protein-coding NID2 nidogen 2 (osteonidogen) O nidogen-2|osteonidogen 20121230 -9606 22796 COG2 RP11-543E8.3 LDLC HGNC:6546|MIM:606974|Ensembl:ENSG00000135775|HPRD:07372|Vega:OTTHUMG00000037753 1 1q42.2 component of oligomeric golgi complex 2 protein-coding COG2 component of oligomeric golgi complex 2 O COG complex subunit 2|brefeldin A-sensitive, peripheral Golgi protein|conserved oligomeric Golgi complex protein 2|conserved oligomeric Golgi complex subunit 2|low density lipoprotein receptor defect C complementing|low density lipoprotein receptor defect C-complementing protein 20121230 -9606 22797 TFEC - TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L HGNC:11754|MIM:604732|Ensembl:ENSG00000105967|HPRD:05294|Vega:OTTHUMG00000023518 7 7q31.2 transcription factor EC protein-coding TFEC transcription factor EC O class E basic helix-loop-helix protein 34 20121230 -9606 22798 LAMB4 - - HGNC:6491|Ensembl:ENSG00000091128|HPRD:11224|Vega:OTTHUMG00000154874 7 7q31 laminin, beta 4 protein-coding LAMB4 laminin, beta 4 O laminin beta-1-related protein|laminin subunit beta-4 20121230 -9606 22800 RRAS2 - TC21 HGNC:17271|MIM:600098|Ensembl:ENSG00000133818|HPRD:02518|Vega:OTTHUMG00000165756 11 11p15.2 related RAS viral (r-ras) oncogene homolog 2 protein-coding RRAS2 related RAS viral (r-ras) oncogene homolog 2 O ras-like protein TC21|ras-related protein R-Ras2|teratocarcinoma oncogene 20121230 -9606 22801 ITGA11 MSTP018 HsT18964 HGNC:6136|MIM:604789|Ensembl:ENSG00000137809|HPRD:05310|Vega:OTTHUMG00000172657 15 15q23 integrin, alpha 11 protein-coding ITGA11 integrin, alpha 11 O integrin alpha-11 20121230 -9606 22802 CLCA4 UNQ562/PRO1124 CaCC|CaCC2 HGNC:2018|Ensembl:ENSG00000016602|HPRD:16719|Vega:OTTHUMG00000010260 1 1p31-p22 chloride channel accessory 4 protein-coding CLCA4 chloride channel accessory 4 O caCC-2|calcium-activated chloride channel family member 4|calcium-activated chloride channel protein 2|calcium-activated chloride channel regulator 4|chloride channel regulator 4|chloride channel, calcium activated, family member 4|hCLCA4|hCaCC-2 20121230 -9606 22803 XRN2 RP11-227D2.1 - HGNC:12836|MIM:608851|Ensembl:ENSG00000088930|HPRD:10309|Vega:OTTHUMG00000032025 20 20p11.2-p11.1 5'-3' exoribonuclease 2 protein-coding XRN2 5'-3' exoribonuclease 2 O DHP protein|Dhm1-like protein (mouse homolog) 20121230 -9606 22806 IKZF3 - AIO|AIOLOS|ZNFN1A3 HGNC:13178|MIM:606221|Ensembl:ENSG00000161405|HPRD:05869|Vega:OTTHUMG00000133250 17 17q21 IKAROS family zinc finger 3 (Aiolos) protein-coding IKZF3 IKAROS family zinc finger 3 (Aiolos) O zinc finger protein Aiolos|zinc finger protein, subfamily 1A, 3 (Aiolos) 20121230 -9606 22807 IKZF2 - ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 HGNC:13177|MIM:606234|Ensembl:ENSG00000030419|HPRD:05872|Vega:OTTHUMG00000133005 2 2q34 IKAROS family zinc finger 2 (Helios) protein-coding IKZF2 IKAROS family zinc finger 2 (Helios) O ikaros family zinc finger protein 2|zinc finger DNA binding protein Helios|zinc finger protein Helios|zinc finger protein, subfamily 1A, 2 (Helios) 20121230 -9606 22808 MRAS - M-RAs|R-RAS3|RRAS3 HGNC:7227|MIM:608435|Ensembl:ENSG00000158186|HPRD:06662|Vega:OTTHUMG00000159888 3 3q22.3 muscle RAS oncogene homolog protein-coding MRAS muscle RAS oncogene homolog O muscle and microspikes RAS|ras-related protein M-Ras|ras-related protein R-Ras3 20121230 -9606 22809 ATF5 - ATFX|HMFN0395 HGNC:790|MIM:606398|Ensembl:ENSG00000169136|HPRD:05906 19 19q13.3 activating transcription factor 5 protein-coding ATF5 activating transcription factor 5 O cAMP-dependent transcription factor ATF-5|cyclic AMP-dependent transcription factor ATF-5|transcription factor ATFx 20121230 -9606 22811 MBS3 - HCFP2 HGNC:6928|MIM:604185 10 10q21.3-q22.1 Moebius syndrome 3 unknown MBS3 Moebius syndrome 3 O - 20120622 -9606 22813 TDGF1P6 - CR-6|CRIPTO-6|TDGF6 HGNC:11706 3 3q22 teratocarcinoma-derived growth factor 1 pseudogene 6 pseudo TDGF1P6 teratocarcinoma-derived growth factor 1 pseudogene 6 O - 20121230 -9606 22814 TDGF1P5 - CR-5|CRIPTO-5|TDGF5 HGNC:11705 8 8q11.23 teratocarcinoma-derived growth factor 1 pseudogene 5 pseudo TDGF1P5 teratocarcinoma-derived growth factor 1 pseudogene 5 O - 20121230 -9606 22815 TDGF1P4 - CR-4|CRIPTO-4|TDGF4 HGNC:11704 6 6p25 teratocarcinoma-derived growth factor 1 pseudogene 4 pseudo TDGF1P4 teratocarcinoma-derived growth factor 1 pseudogene 4 O - 20121230 -9606 22816 TDGF1P2 hCG_1644233 CR-2|CRIPTO-2|TDGF2 HGNC:11702 2 2q36.3 teratocarcinoma-derived growth factor 1 pseudogene 2 pseudo TDGF1P2 teratocarcinoma-derived growth factor 1 pseudogene 2 O - 20121230 -9606 22817 NR1I4 - CAR2 HGNC:7970 - - nuclear receptor subfamily 1, group I, member 4 protein-coding NR1I4 nuclear receptor subfamily 1, group I, member 4 O - 20080828 -9606 22818 COPZ1 CGI-120 COPZ|HSPC181|zeta-COP|zeta1-COP HGNC:2243|Ensembl:ENSG00000111481|HPRD:16738|Vega:OTTHUMG00000169762 12 12q13.2-q13.3 coatomer protein complex, subunit zeta 1 protein-coding COPZ1 coatomer protein complex, subunit zeta 1 O coatomer subunit zeta-1|zeta-1 COP|zeta-1-coat protein 20121230 -9606 22820 COPG1 - COPG HGNC:2236|Ensembl:ENSG00000181789|HPRD:09887|Vega:OTTHUMG00000159451 3 3q21.3 coatomer protein complex, subunit gamma 1 protein-coding COPG1 coatomer protein complex, subunit gamma 1 O coat protein gamma-cop|coatomer subunit gamma|coatomer subunit gamma-1|gamma-1-COP|gamma-1-coat protein|gamma-COP|gamma-coat protein 20121230 -9606 22821 RASA3 RP11-245B11.3 GAP1IP4BP|GAPIII HGNC:20331|MIM:605182|Ensembl:ENSG00000185989|HPRD:05537|Vega:OTTHUMG00000017399 13 13q34 RAS p21 protein activator 3 protein-coding RASA3 RAS p21 protein activator 3 O GAP1(IP4BP)|GTPase activating protein III|Ins(1,3,4,5)P4-binding protein|inositol 1,3,4,5-tetrakisphosphate-binding protein|ins P4-binding protein|ras GTPase-activating protein 3 20121230 -9606 22822 PHLDA1 - DT1P1B11|PHRIP|TDAG51 HGNC:8933|MIM:605335|Ensembl:ENSG00000139289|HPRD:05625|Vega:OTTHUMG00000169783 12 12q15 pleckstrin homology-like domain, family A, member 1 protein-coding PHLDA1 pleckstrin homology-like domain, family A, member 1 O PQ-rich protein|PQR protein|T-cell death-associated gene 51 protein|apoptosis-associated nuclear protein|pleckstrin homology-like domain family A member 1|proline- and glutamine-rich protein|proline- and histidine-rich protein|proline-histidine rich protein 20121230 -9606 22823 MTF2 - M96|PCL2|RP5-976O13.1|dJ976O13.2 HGNC:29535|MIM:609882|Ensembl:ENSG00000143033|HPRD:14342|Vega:OTTHUMG00000010161 1 1p22.1 metal response element binding transcription factor 2 protein-coding MTF2 metal response element binding transcription factor 2 O hPCl2|metal regulatory transcription factor 2|metal response element-binding transcription factor 2|metal-response element DNA-binding protein M96|metal-response element-binding transcription factor 2|polycomb-like 2|polycomb-like protein 2|putative DNA binding protein 20121230 -9606 22824 HSPA4L - APG-1|HSPH3|Osp94 HGNC:17041|Ensembl:ENSG00000164070|HPRD:07137|Vega:OTTHUMG00000133302 4 4q28 heat shock 70kDa protein 4-like protein-coding HSPA4L heat shock 70kDa protein 4-like O heat shock 70 kDa protein 4-like protein|heat shock 70 kDa protein 4L|heat shock 70-related protein APG-1|heat shock protein (hsp110 family)|osmotic stress protein 94 20121230 -9606 22826 DNAJC8 HSPC315 HSPC331|SPF31 HGNC:15470|Ensembl:ENSG00000126698|HPRD:13236|Vega:OTTHUMG00000003538 1 1p35.3 DnaJ (Hsp40) homolog, subfamily C, member 8 protein-coding DNAJC8 DnaJ (Hsp40) homolog, subfamily C, member 8 O dnaJ homolog subfamily C member 8|splicing protein spf31 20121230 -9606 22827 PUF60 - FIR|RoBPI|SIAHBP1 HGNC:17042|MIM:604819|Ensembl:ENSG00000179950|HPRD:18051|Vega:OTTHUMG00000165155 8 8q24.3 poly-U binding splicing factor 60KDa protein-coding PUF60 poly-U binding splicing factor 60KDa O FBP interacting repressor|FUSE-binding protein-interacting repressor|Ro ribonucleoprotein-binding protein 1|Siah binding protein 1|poly(U)-binding-splicing factor PUF60|pyrimidine tract binding splicing factor 20121230 -9606 22828 SCAF8 - RBM16 HGNC:20959|Ensembl:ENSG00000213079|HPRD:11487|Vega:OTTHUMG00000015877 6 6q25.1-q25.3 SR-related CTD-associated factor 8 protein-coding SCAF8 SR-related CTD-associated factor 8 O CDC5L complex-associated protein 7|RNA binding motif protein 16|RNA-binding motif protein 16|RNA-binding protein 16|SR-like CTD-associated factor 8|SR-related and CTD-associated factor 8|protein SCAF8|putative RNA-binding protein 16 20121230 -9606 22829 NLGN4Y - - HGNC:15529|MIM:400028|Ensembl:ENSG00000165246|HPRD:11849|Vega:OTTHUMG00000036618 Y Yq11.221 neuroligin 4, Y-linked protein-coding NLGN4Y neuroligin 4, Y-linked O neuroligin-4, Y-linked 20121230 -9606 22832 KIAA1009 RP1-76K10.1 C6orf84|QN1 HGNC:21107|MIM:610201|Ensembl:ENSG00000135315|HPRD:10796|Vega:OTTHUMG00000015123 6 6q14.3 KIAA1009 protein-coding KIAA1009 KIAA1009 O protein QN1 homolog 20121230 -9606 22833 KIAA0894 RP11-476E15.3 - - 10 10q23.33 KIAA0894 protein unknown - - - - 20120710 -9606 22834 ZNF652 - - HGNC:29147|MIM:613907|Ensembl:ENSG00000198740|HPRD:18362|Vega:OTTHUMG00000161322 17 17q21.32 zinc finger protein 652 protein-coding ZNF652 zinc finger protein 652 O - 20121230 -9606 22835 ZFP30 - ZNF745 HGNC:29555|Ensembl:ENSG00000120784|HPRD:17201|Vega:OTTHUMG00000048177 19 19q13.12 ZFP30 zinc finger protein protein-coding ZFP30 ZFP30 zinc finger protein O zfp-30|zinc finger protein 30 homolog|zinc finger protein 745 20121230 -9606 22836 RHOBTB3 - - HGNC:18757|MIM:607353|Ensembl:ENSG00000164292|HPRD:09557|Vega:OTTHUMG00000121171 5 5q15 Rho-related BTB domain containing 3 protein-coding RHOBTB3 Rho-related BTB domain containing 3 O rho-related BTB domain-containing protein 3 20121230 -9606 22837 COBLL1 - COBLR1 HGNC:23571|MIM:610318|Ensembl:ENSG00000082438|HPRD:10844|Vega:OTTHUMG00000074019 2 2q24.3 cordon-bleu WH2 repeat protein-like 1 protein-coding COBLL1 cordon-bleu WH2 repeat protein-like 1 O COBL-like 1|cordon-bleu protein-like 1 20121230 -9606 22838 RNF44 - - HGNC:19180|Ensembl:ENSG00000146083|HPRD:15265|Vega:OTTHUMG00000130664 5 5q35.2 ring finger protein 44 protein-coding RNF44 ring finger protein 44 O RING finger protein 44 20121230 -9606 22839 DLGAP4 - DAP4|DLP4|RP5-977B1.6|SAPAP4 HGNC:24476|Ensembl:ENSG00000080845|HPRD:16826|Vega:OTTHUMG00000032390 20 20q11.23 discs, large (Drosophila) homolog-associated protein 4 protein-coding DLGAP4 discs, large (Drosophila) homolog-associated protein 4 O DAP-4|PSD-95/SAP90-binding protein 4|SAP90/PSD-95-associated protein 4|SAPAP-4|disks large associated protein 4|disks large-associated protein 4 20121230 -9606 22841 RAB11FIP2 - Rab11-FIP2|nRip11 HGNC:29152|MIM:608599|Ensembl:ENSG00000107560|HPRD:10548|Vega:OTTHUMG00000019128 10 10q26.11 RAB11 family interacting protein 2 (class I) protein-coding RAB11FIP2 RAB11 family interacting protein 2 (class I) O RAB11-FIP2 long isoform|rab11 family-interacting protein 2 20121230 -9606 22843 PPM1E - CaMKP-N|POPX1|PP2CH|caMKN HGNC:19322|Ensembl:ENSG00000175175|HPRD:17888|Vega:OTTHUMG00000179248 17 17q22 protein phosphatase, Mg2+/Mn2+ dependent, 1E protein-coding PPM1E protein phosphatase, Mg2+/Mn2+ dependent, 1E O ca(2+)/calmodulin-dependent protein kinase phosphatase N|caMKP-nucleus|nuclear calmodulin-dependent protein kinase phosphatase|partner of PIX 1|partner of PIX-alpha|partner of PIXA|protein phosphatase 1E|protein phosphatase 1E (PP2C domain containing) 20121230 -9606 22844 FRMPD1 RP11-263I4.1 FRMD2 HGNC:29159|Ensembl:ENSG00000070601|HPRD:17018|Vega:OTTHUMG00000019927 9 9p13.2 FERM and PDZ domain containing 1 protein-coding FRMPD1 FERM and PDZ domain containing 1 O FERM and PDZ domain-containing protein 1|FERM domain-containing protein 2 20121230 -9606 22845 DOLK UNQ2422/PRO4980 CDG1M|DK|DK1|SEC59|TMEM15 HGNC:23406|MIM:610746|Ensembl:ENSG00000175283|HPRD:15525|Vega:OTTHUMG00000020765 9 9q34.11 dolichol kinase protein-coding DOLK dolichol kinase O SEC59 homolog|dolichol kinase 1|transmembrane protein 15 20121230 -9606 22846 VASH1 - KIAA1036 HGNC:19964|MIM:609011|Ensembl:ENSG00000071246|HPRD:12353|Vega:OTTHUMG00000171493 14 14q24.3 vasohibin 1 protein-coding VASH1 vasohibin 1 O vasohibin-1 20121230 -9606 22847 ZNF507 - - HGNC:23783|Ensembl:ENSG00000168813|HPRD:11722|Vega:OTTHUMG00000180220 19 19q13.11 zinc finger protein 507 protein-coding ZNF507 zinc finger protein 507 O - 20121230 -9606 22848 AAK1 - - HGNC:19679|Ensembl:ENSG00000115977|HPRD:10620|Vega:OTTHUMG00000129648 2 2p14 AP2 associated kinase 1 protein-coding AAK1 AP2 associated kinase 1 O AP2-associated protein kinase 1|adaptor-associated kinase 1 20121230 -9606 22849 CPEB3 RP11-430L14.3 - HGNC:21746|MIM:610606|Ensembl:ENSG00000107864|HPRD:16745|Vega:OTTHUMG00000018756 10 10q23.32 cytoplasmic polyadenylation element binding protein 3 protein-coding CPEB3 cytoplasmic polyadenylation element binding protein 3 O CPE-BP3|CPE-binding protein 3|cytoplasmic polyadenylation element-binding protein 3|hCPEB-3 20121230 -9606 22850 ADNP2 - ZNF508 HGNC:23803|Ensembl:ENSG00000101544|HPRD:13822|Vega:OTTHUMG00000172535 18 18q23 ADNP homeobox 2 protein-coding ADNP2 ADNP homeobox 2 O ADNP homeobox protein 2|zinc finger protein 508 20121230 -9606 22852 ANKRD26 - THC2|bA145E8.1 HGNC:29186|MIM:610855|Ensembl:ENSG00000107890|HPRD:16491|Vega:OTTHUMG00000017851 10 10p12.1 ankyrin repeat domain 26 protein-coding ANKRD26 ankyrin repeat domain 26 O ankyrin repeat domain-containing protein 26 20121230 -9606 22853 LMTK2 - AATYK2|BREK|KPI-2|KPI2|LMR2|cprk HGNC:17880|MIM:610989|Ensembl:ENSG00000164715|HPRD:13994|Vega:OTTHUMG00000154256 7 7q21.3 lemur tyrosine kinase 2 protein-coding LMTK2 lemur tyrosine kinase 2 O CDK5/p35-regulated kinase|apoptosis-associated tyrosine kinase 2|brain-enriched kinase|cyclin-dependent kinase 5/p35-regulated kinase|hBREK|kinase phosphatase inhibitor 2|kinase/phosphatase/inhibitor 2|serine/threonine-protein kinase KPI-2|serine/threonine-protein kinase LMTK2 20121230 -9606 22854 NTNG1 UNQ571/PRO1133 Lmnt1 HGNC:23319|MIM:608818|Ensembl:ENSG00000162631|HPRD:16389|Vega:OTTHUMG00000010965 1 1p13.3 netrin G1 protein-coding NTNG1 netrin G1 O YLSR571|axon guidance molecule|laminet 1|laminet-1|netrin G1f|netrin-G1 20121230 -9606 22856 CHSY1 UNQ756/PRO1487 CHSY|CSS1|ChSy-1|TPBS HGNC:17198|MIM:608183|Ensembl:ENSG00000131873|HPRD:10493|Vega:OTTHUMG00000149873 15 15q26.3 chondroitin sulfate synthase 1 protein-coding CHSY1 chondroitin sulfate synthase 1 O N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase 1|N-acetylgalactosaminyltransferase II|carbohydrate synthase 1|chondroitin glucuronyltransferase 1|chondroitin glucuronyltransferase II|chondroitin synthase 1|glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase 1 20121230 -9606 22858 ICK - ECO|LCK2|MRK HGNC:21219|MIM:612325|Ensembl:ENSG00000112144|HPRD:09996|Vega:OTTHUMG00000014870 6 6p12.1 intestinal cell (MAK-like) kinase protein-coding ICK intestinal cell (MAK-like) kinase O MAK-related kinase|hICK|laryngeal cancer kinase 2|serine/threonine protein kinase|serine/threonine-protein kinase ICK 20121230 -9606 22859 LPHN1 - CIRL1|CL1|LEC2 HGNC:20973|Ensembl:ENSG00000072071|HPRD:14305|Vega:OTTHUMG00000182138 19 19p13.2 latrophilin 1 protein-coding LPHN1 latrophilin 1 O CIRL-1|calcium-independent alpha-latrotoxin receptor 1|latrophilin-1|lectomedin-2 20121230 -9606 22861 NLRP1 - CARD7|CLR17.1|DEFCAP|DEFCAP-L/S|NAC|NALP1|PP1044|SLEV1|VAMAS1 HGNC:14374|MIM:606636|Ensembl:ENSG00000091592|HPRD:07364|Vega:OTTHUMG00000132419 17 17p13.2 NLR family, pyrin domain containing 1 protein-coding NLRP1 NLR family, pyrin domain containing 1 O NACHT, LRR and PYD containing protein 1|NACHT, LRR and PYD domains-containing protein 1|NACHT, leucine rich repeat and PYD (pyrin domain) containing 1|NACHT, leucine rich repeat and PYD containing 1|caspase recruitment domain protein 7|caspase recruitment domain-containing protein 7|death effector filament-forming Ced-4-like apoptosis protein|nucleotide-binding domain and caspase recruitment domain|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 1 20121230 -9606 22862 FNDC3A RP11-203I16.5 FNDC3|HUGO|bA203I16.1|bA203I16.5 HGNC:20296|Ensembl:ENSG00000102531|HPRD:13548|Vega:OTTHUMG00000016911 13 13q14.2 fibronectin type III domain containing 3A protein-coding FNDC3A fibronectin type III domain containing 3A O fibronectin type-III domain-containing protein 3A|human gene expressed in odontoblasts 20121230 -9606 22863 ATG14 - ATG14L|BARKOR|KIAA0831 HGNC:19962|MIM:613515|Ensembl:ENSG00000126775|HPRD:13820|Vega:OTTHUMG00000172129 14 14q22.3 autophagy related 14 protein-coding ATG14 autophagy related 14 O ATG14 autophagy related 14 homolog|Beclin 1-Interacting protein|autophagy-related protein 14-like protein|beclin 1-associated autophagy-related key regulator 20121230 -9606 22864 R3HDM2 - PR01365 HGNC:29167|Ensembl:ENSG00000179912|HPRD:13827|Vega:OTTHUMG00000171568 12 12q13.3 R3H domain containing 2 protein-coding R3HDM2 R3H domain containing 2 O R3H domain-containing protein 2 20121230 -9606 22865 SLITRK3 - - HGNC:23501|MIM:609679|Ensembl:ENSG00000121871|HPRD:18064|Vega:OTTHUMG00000158072 3 3q26.1 SLIT and NTRK-like family, member 3 protein-coding SLITRK3 SLIT and NTRK-like family, member 3 O SLIT and NTRK-like protein 3|slit and trk like gene 3 20121230 -9606 22866 CNKSR2 RP11-450P7.2 CNK2|KSR2|MAGUIN HGNC:19701|MIM:300724|Ensembl:ENSG00000149970|HPRD:06473|Vega:OTTHUMG00000021233 X Xp22.12 connector enhancer of kinase suppressor of Ras 2 protein-coding CNKSR2 connector enhancer of kinase suppressor of Ras 2 O CNK homolog protein 2|connector enhancer of KSR 2|connector enhancer of KSR2|connector enhancer of kinase suppressor of ras 2|membrane-associated guanylate kinase-interacting protein 20121230 -9606 22868 FASTKD2 - KIAA0971 HGNC:29160|MIM:612322|Ensembl:ENSG00000118246|HPRD:13825|Vega:OTTHUMG00000132917 2 2q33.3 FAST kinase domains 2 protein-coding FASTKD2 FAST kinase domains 2 O FAST kinase domain-containing protein 2 20121230 -9606 22869 ZNF510 RP11-535M15.3 - HGNC:29161|Ensembl:ENSG00000081386|HPRD:18348|Vega:OTTHUMG00000020303 9 9q22.33 zinc finger protein 510 protein-coding ZNF510 zinc finger protein 510 O - 20121230 -9606 22870 PPP6R1 - KIAA1115|PP6R1|SAP190|SAPS1 HGNC:29195|MIM:610875|Ensembl:ENSG00000105063|HPRD:17207|Vega:OTTHUMG00000180704 19 19q13.42 protein phosphatase 6, regulatory subunit 1 protein-coding PPP6R1 protein phosphatase 6, regulatory subunit 1 O SAPS domain family, member 1|serine/threonine-protein phosphatase 6 regulatory subunit 1 20121230 -9606 22871 NLGN1 - NL1 HGNC:14291|MIM:600568|Ensembl:ENSG00000169760|HPRD:07195|Vega:OTTHUMG00000157005 3 3q26.31 neuroligin 1 protein-coding NLGN1 neuroligin 1 O neuroligin-1 20121230 -9606 22872 SEC31A HSPC275 ABP125|ABP130|HSPC334|SEC31L1 HGNC:17052|MIM:610257|Ensembl:ENSG00000138674|HPRD:15314|Vega:OTTHUMG00000130297 4 4q21.22 SEC31 homolog A (S. cerevisiae) protein-coding SEC31A SEC31 homolog A (S. cerevisiae) O SEC31-like protein 1|SEC31-related protein A|protein transport protein Sec31A|web1-like protein|yeast Sec31p homolog 20121230 -9606 22873 DZIP1 RP11-23E3.3 DZIP|DZIPt1 HGNC:20908|MIM:608671|Ensembl:ENSG00000134874|HPRD:16363|Vega:OTTHUMG00000017224 13 13q32.1 DAZ interacting protein 1 protein-coding DZIP1 DAZ interacting protein 1 O DAZ interacting protein testis1|DAZ-interacting protein 1/2|zinc finger DAZ interacting protein 1|zinc finger protein DZIP1|zinc-finger protein DZIPt1 20121230 -9606 22874 PLEKHA6 RP11-203F10.4 PEPP-3|PEPP3 HGNC:17053|MIM:607771|Ensembl:ENSG00000143850|HPRD:09685|Vega:OTTHUMG00000036057 1 1q32.1 pleckstrin homology domain containing, family A member 6 protein-coding PLEKHA6 pleckstrin homology domain containing, family A member 6 O PH domain-containing family A member 6|phosphoinositol 3-phosphate-binding protein 3|phosphoinositol 3-phosphate-binding protein-3|pleckstrin homology domain-containing family A member 6 20121230 -9606 22875 ENPP4 - NPP4 HGNC:3359|Ensembl:ENSG00000001561|HPRD:16862|Vega:OTTHUMG00000014779 6 6p21.1 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) protein-coding ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) O E-NPP 4|NPP-4|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function)|ectonucleotide pyrophosphatase/phosphodiesterase family member 4 20121230 -9606 22876 INPP5F MSTP007 MSTPO47|SAC2|hSAC2 HGNC:17054|MIM:609389|Ensembl:ENSG00000198825|HPRD:11048|Vega:OTTHUMG00000019158 10 10q26.11 inositol polyphosphate-5-phosphatase F protein-coding INPP5F inositol polyphosphate-5-phosphatase F O Sac domain-containing inositol phosphatase 2|phosphatidylinositide phosphatase SAC2|sac domain-containing phosphoinositide 5-phosphatase 2 20121230 -9606 22877 MLXIP - MIR|MONDOA|bHLHe36 HGNC:17055|MIM:608090|Ensembl:ENSG00000175727|HPRD:10478|Vega:OTTHUMG00000168953 12 12q24.31 MLX interacting protein protein-coding MLXIP MLX interacting protein O MLX-interacting protein|Mlx interactor|MondoA|class E basic helix-loop-helix protein 36|transcriptional activator MondoA 20121230 -9606 22878 TRAPPC8 - GSG1|HsT2706|KIAA1012|TRS85 HGNC:29169|MIM:614136|Ensembl:ENSG00000153339|HPRD:10019|Vega:OTTHUMG00000132267 18 18q12.1 trafficking protein particle complex 8 protein-coding TRAPPC8 trafficking protein particle complex 8 O general sporulation gene 1 homolog|protein TRS85 homolog|trafficking protein particle complex subunit 8 20121230 -9606 22879 MON1B - HSRG1|SAND2|SRG1 HGNC:25020|MIM:608954|Ensembl:ENSG00000103111|HPRD:12342|Vega:OTTHUMG00000137618 16 16q23.1 MON1 homolog B (yeast) protein-coding MON1B MON1 homolog B (yeast) O HSV-1 stimulation-related gene 1 protein|HSV-I stimulating-related protein|vacuolar fusion protein MON1 homolog B 20121230 -9606 22880 MORC2 - ZCW3|ZCWCC1 HGNC:23573|Ensembl:ENSG00000133422|HPRD:11699|Vega:OTTHUMG00000151193 22 22q12.2 MORC family CW-type zinc finger 2 protein-coding MORC2 MORC family CW-type zinc finger 2 O MORC family CW-type zinc finger protein 2|zinc finger CW-type coiled-coil domain protein 1|zinc finger, CW type with coiled-coil domain 1|zinc finger, CW-type with coiled-coil domain 1 20121230 -9606 22881 ANKRD6 RP1-122O8.2 - HGNC:17280|MIM:610583|Ensembl:ENSG00000135299|HPRD:09798|Vega:OTTHUMG00000015202 6 6q14.2-q16.1 ankyrin repeat domain 6 protein-coding ANKRD6 ankyrin repeat domain 6 O ankyrin repeat domain-containing protein 6|diversin 20121230 -9606 22882 ZHX2 - AFR1|RAF HGNC:18513|MIM:609185|Ensembl:ENSG00000178764|HPRD:16458|Vega:OTTHUMG00000165077 8 8q24.13 zinc fingers and homeoboxes 2 protein-coding ZHX2 zinc fingers and homeoboxes 2 O AFP regulator 1|alpha-fetoprotein regulator 1|regulator of AFP|transcription factor ZHX2|zinc finger and homeodomain protein 2|zinc fingers and homeoboxes protein 2|zinc-fingers and homeoboxes 2 20121230 -9606 22883 CLSTN1 RP11-558F24.5 ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 HGNC:17447|MIM:611321|Ensembl:ENSG00000171603|HPRD:10837|Vega:OTTHUMG00000001451 1 1p36.22 calsyntenin 1 protein-coding CLSTN1 calsyntenin 1 O alcadein alpha 1|alcadein-alpha|alzheimer-related cadherin-like protein|cadherin-related family member 12|calsyntenin-1|non-classical cadherin XB31alpha|non-classical cadherin XB31alpha1 20121230 -9606 22884 WDR37 - RP11-529L18.2 HGNC:31406|Ensembl:ENSG00000047056|HPRD:15668|Vega:OTTHUMG00000017540 10 10p15.3 WD repeat domain 37 protein-coding WDR37 WD repeat domain 37 O WD repeat-containing protein 37 20121230 -9606 22885 ABLIM3 HMFN1661 - HGNC:29132|MIM:611305|Ensembl:ENSG00000173210|HPRD:12411|Vega:OTTHUMG00000129932 5 5q32 actin binding LIM protein family, member 3 protein-coding ABLIM3 actin binding LIM protein family, member 3 O abLIM-3|actin-binding LIM protein 3|actin-binding LIM protein family member 3 20121230 -9606 22887 FOXJ3 - - HGNC:29178|Ensembl:ENSG00000198815|HPRD:13549|Vega:OTTHUMG00000007026 1 1p34.2 forkhead box J3 protein-coding FOXJ3 forkhead box J3 O forkhead box protein J3 20121230 -9606 22888 UBOX5 RP5-1187M17.9 RNF37|UBCE7IP5|UIP5 HGNC:17777|Ensembl:ENSG00000185019|HPRD:15605|Vega:OTTHUMG00000031731 20 20p13 U-box domain containing 5 protein-coding UBOX5 U-box domain containing 5 O RING finger protein 37|U-box domain-containing protein 5|ubiquitin conjugating enzyme 7 interacting protein 5|ubiquitin-conjugating enzyme 7-interacting protein 5 20121230 -9606 22889 KIAA0907 - BLOM7|RP11-336K24.1 HGNC:29145|Ensembl:ENSG00000132680|HPRD:17198|Vega:OTTHUMG00000014103 1 1q22 KIAA0907 protein-coding KIAA0907 KIAA0907 O UPF0469 protein KIAA0907 20121230 -9606 22890 ZBTB1 - ZNF909 HGNC:20259|Ensembl:ENSG00000126804|HPRD:15688|Vega:OTTHUMG00000171147 14 14q23.3 zinc finger and BTB domain containing 1 protein-coding ZBTB1 zinc finger and BTB domain containing 1 O zinc finger and BTB domain-containing protein 1 20121230 -9606 22891 ZNF365 - Su48|UAN|ZNF365D HGNC:18194|MIM:607818|Ensembl:ENSG00000138311|HPRD:06380|Vega:OTTHUMG00000018302 10 10q21.2 zinc finger protein 365 protein-coding ZNF365 zinc finger protein 365 O protein ZNF365|protein su48|talanin 20121230 -9606 22893 BAHD1 - - HGNC:29153|MIM:613880|Ensembl:ENSG00000140320|HPRD:12518|Vega:OTTHUMG00000129982 15 15q15.1 bromo adjacent homology domain containing 1 protein-coding BAHD1 bromo adjacent homology domain containing 1 O BAH domain-containing protein 1|bromo adjacent homology domain-containing 1 protein 20121230 -9606 22894 DIS3 - EXOSC11|KIAA1008|RP11-342J4.3|RRP44|bA555G22.1|dis3p HGNC:20604|MIM:607533|Ensembl:ENSG00000083520|HPRD:06338|Vega:OTTHUMG00000017070 13 13q22.1 DIS3 mitotic control homolog (S. cerevisiae) protein-coding DIS3 DIS3 mitotic control homolog (S. cerevisiae) O 2810028N01Rik|exosome complex exonuclease RRP44|exosome component 11|mitotic control protein dis3 homolog|protein DIS3 homolog|ribosomal RNA-processing protein 44 20121230 -9606 22895 RPH3A - - HGNC:17056|MIM:612159|Ensembl:ENSG00000089169|HPRD:15273|Vega:OTTHUMG00000169713 12 12q24.13 rabphilin 3A homolog (mouse) protein-coding RPH3A rabphilin 3A homolog (mouse) O exophilin-1|rabphilin-3A 20121230 -9606 22897 CEP164 - NPHP15 HGNC:29182|MIM:614848|Ensembl:ENSG00000110274|HPRD:10854|Vega:OTTHUMG00000167070 11 11q23.3 centrosomal protein 164kDa protein-coding CEP164 centrosomal protein 164kDa O centrosomal protein of 164 kDa 20121230 -9606 22898 DENND3 - - HGNC:29134|Ensembl:ENSG00000105339|HPRD:11114|Vega:OTTHUMG00000164775 8 8q24.3 DENN/MADD domain containing 3 protein-coding DENND3 DENN/MADD domain containing 3 O DENN domain-containing protein 3 20121230 -9606 22899 ARHGEF15 - ARGEF15|E5|Ephexin5|Vsm-RhoGEF HGNC:15590|MIM:608504|Ensembl:ENSG00000198844|HPRD:10535|Vega:OTTHUMG00000108187 17 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 protein-coding ARHGEF15 Rho guanine nucleotide exchange factor (GEF) 15 O Rho GEF 15|Rho guanine exchange factor (GEF) 15|ephexin-5|rho guanine nucleotide exchange factor 15 20121230 -9606 22900 CARD8 - CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN HGNC:17057|MIM:609051|Ensembl:ENSG00000105483|HPRD:16425|Vega:OTTHUMG00000165047 19 19q13.33 caspase recruitment domain family, member 8 protein-coding CARD8 caspase recruitment domain family, member 8 O CARD inhibitor of NF-kappaB-activating ligands|apoptotic protein NDPP1|caspase recruitment domain-containing protein 8|tumor up-regulated CARD-containing antagonist of CASP9|tumor up-regulated CARD-containing antagonist of caspase nine 20121230 -9606 22901 ARSG UNQ839/PRO1777 - HGNC:24102|MIM:610008|Ensembl:ENSG00000141337|HPRD:13826|Vega:OTTHUMG00000179810 17 17q24.2 arylsulfatase G protein-coding ARSG arylsulfatase G O ASG 20121230 -9606 22902 RUFY3 - RIPX|SINGAR1 HGNC:30285|MIM:611194|Ensembl:ENSG00000018189|HPRD:15251|Vega:OTTHUMG00000129910 4 4q13.3 RUN and FYVE domain containing 3 protein-coding RUFY3 RUN and FYVE domain containing 3 O protein RUFY3|rap2 interacting protein x|rap2-interacting protein x|singar|single axon-regulated protein|single axon-related 1 20121230 -9606 22903 BTBD3 RP4-742J24.3 dJ742J24.1 HGNC:15854|Ensembl:ENSG00000132640|HPRD:12538|Vega:OTTHUMG00000031889 20 20p12.2 BTB (POZ) domain containing 3 protein-coding BTBD3 BTB (POZ) domain containing 3 O BTB/POZ domain-containing protein 3 20121230 -9606 22904 SBNO2 - KIAA0963|SNO|STNO HGNC:29158|Ensembl:ENSG00000064932|HPRD:17203|Vega:OTTHUMG00000181875 19 19p13.3 strawberry notch homolog 2 (Drosophila) protein-coding SBNO2 strawberry notch homolog 2 (Drosophila) O protein strawberry notch homolog 2 20121230 -9606 22905 EPN2 - EHB21 HGNC:18639|MIM:607263|Ensembl:ENSG00000072134|HPRD:06271|Vega:OTTHUMG00000178447 17 17p11.2 epsin 2 protein-coding EPN2 epsin 2 O EPS-15-interacting protein 2|Eps15 binding protein|epsin-2 20121230 -9606 22906 TRAK1 - MILT1|OIP106 HGNC:29947|MIM:608112|Ensembl:ENSG00000182606|HPRD:09732|Vega:OTTHUMG00000131795 3 3p22.1 trafficking protein, kinesin binding 1 protein-coding TRAK1 trafficking protein, kinesin binding 1 O 106 kDa O-GlcNAc transferase-interacting protein|O-linked N-acetylglucosamine transferase interacting protein 106|OGT(O-Glc-NAc transferase)-interacting protein 106 KDa|milton homolog 1|trafficking kinesin-binding protein 1 20121230 -9606 22907 DHX30 - DDX30|RETCOR HGNC:16716|Ensembl:ENSG00000132153|HPRD:13142|Vega:OTTHUMG00000133522 3 3p21.31 DEAH (Asp-Glu-Ala-His) box polypeptide 30 protein-coding DHX30 DEAH (Asp-Glu-Ala-His) box polypeptide 30 O ATP-dependent RNA helicase DHX30|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 30|DEAH box protein 30|putative ATP-dependent RNA helicase DHX30|retina co-repressor 20121230 -9606 22908 SACM1L - SAC1 HGNC:17059|MIM:606569|Ensembl:ENSG00000211456|HPRD:07587|Vega:OTTHUMG00000156653 3 3p21.3 SAC1 suppressor of actin mutations 1-like (yeast) protein-coding SACM1L SAC1 suppressor of actin mutations 1-like (yeast) O phosphatidylinositide phosphatase SAC1|suppressor of actin 1|suppressor of actin mutations 1-like protein 20121230 -9606 22909 FAN1 - KIAA1018|KMIN|MTMR15 HGNC:29170|MIM:613534|Ensembl:ENSG00000198690|HPRD:17205|Vega:OTTHUMG00000175661 15 15q13.2-q13.3 FANCD2/FANCI-associated nuclease 1 protein-coding FAN1 FANCD2/FANCI-associated nuclease 1 O coiled-coil domain-containing protein MTMR15|fanconi anemia associated nuclease 1|fanconi-associated nuclease 1|myotubularin-related protein 15 20121230 -9606 22911 WDR47 - - HGNC:29141|Ensembl:ENSG00000085433|HPRD:15670|Vega:OTTHUMG00000011734 1 1p13.3 WD repeat domain 47 protein-coding WDR47 WD repeat domain 47 O WD repeat-containing protein 47|nemitin|neuronal enriched MAP interacting protein 20121230 -9606 22913 RALY RP1-64K7.1 HNRPCL2|P542 HGNC:15921|MIM:614663|Ensembl:ENSG00000125970|HPRD:11480|Vega:OTTHUMG00000032283 20 20q11.21-q11.23 RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) protein-coding RALY RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) O RNA-binding protein (autoantigenic)|RNA-binding protein (autoantigenic, hnRNP-associated with lethal yellow)|RNA-binding protein Raly|autoantigen p542|heterogeneous nuclear ribonucleoprotein C-like 2|hnRNP associated with lethal yellow protein homolog|hnRNP core protein C-like 2 20121230 -9606 22914 KLRK1 - CD314|D12S2489E|KLR|NKG2-D|NKG2D HGNC:18788|MIM:611817|Ensembl:ENSG00000213809|HPRD:17240|Vega:OTTHUMG00000168574 12 12p13.2-p12.3 killer cell lectin-like receptor subfamily K, member 1 protein-coding KLRK1 killer cell lectin-like receptor subfamily K, member 1 O NK cell receptor D|NKG2-D type II integral membrane protein|NKG2-D-activating NK receptor 20121230 -9606 22915 MMRN1 - ECM|EMILIN4|GPIa*|MMRN HGNC:7178|MIM:601456|Ensembl:ENSG00000138722|HPRD:03267|Vega:OTTHUMG00000130947 4 4q22 multimerin 1 protein-coding MMRN1 multimerin 1 O EMILIN-4|elastin microfibril interface located protein 4|elastin microfibril interfacer 4|endothelial cell multimerin|glycoprotein Ia*|multimerin-1 20121230 -9606 22916 NCBP2 PIG55 CBC2|CBP20|NIP1 HGNC:7659|MIM:605133|Ensembl:ENSG00000114503|HPRD:05503|Vega:OTTHUMG00000155520 3 3q29 nuclear cap binding protein subunit 2, 20kDa protein-coding NCBP2 nuclear cap binding protein subunit 2, 20kDa O 20 kDa nuclear cap-binding protein|NCBP 20 kDa subunit|NCBP interacting protein 1|NCBP-interacting protein 1|cell proliferation-inducing gene 55 protein|nuclear cap-binding protein subunit 2 20121230 -9606 22917 ZP1 - - HGNC:13187|MIM:195000|Ensembl:ENSG00000149506|HPRD:15953|Vega:OTTHUMG00000167797 11 11q12.2 zona pellucida glycoprotein 1 (sperm receptor) protein-coding ZP1 zona pellucida glycoprotein 1 (sperm receptor) O zona pellucida protein 1|zona pellucida sperm-binding protein 1|zp-1 20121230 -9606 22918 CD93 - C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 HGNC:15855|MIM:120577|Ensembl:ENSG00000125810|HPRD:00396|Vega:OTTHUMG00000032058 20 20p11.21 CD93 molecule protein-coding CD93 CD93 molecule O C1q receptor 1|C1q/MBL/SPA receptor|C1qR|CD93 antigen|complement component 1 q subcomponent receptor 1|complement component 1, q subcomponent, receptor 1|complement component C1q receptor|matrix-remodeling-associated protein 4|matrix-remodelling associated 4 20121230 -9606 22919 MAPRE1 - EB1 HGNC:6890|MIM:603108|Ensembl:ENSG00000101367|HPRD:04379|Vega:OTTHUMG00000032228 20 20q11.1-q11.23 microtubule-associated protein, RP/EB family, member 1 protein-coding MAPRE1 microtubule-associated protein, RP/EB family, member 1 O APC-binding protein EB1|adenomatous polyposis coli-binding protein EB1|end-binding protein 1|microtubule-associated protein RP/EB family member 1 20121230 -9606 22920 KIFAP3 RP1-190I16.1 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 HGNC:17060|MIM:601836|Ensembl:ENSG00000075945|HPRD:03499|Vega:OTTHUMG00000035947 1 1q24.2 kinesin-associated protein 3 protein-coding KIFAP3 kinesin-associated protein 3 O small G protein GDP dissociation stimulator|smg GDS-associated protein 20121230 -9606 22921 MSRB2 CGI-131 CBS-1|CBS1|MSRB|PILB HGNC:17061|MIM:613782|Ensembl:ENSG00000148450|HPRD:17606|Vega:OTTHUMG00000017812 10 10p12 methionine sulfoxide reductase B2 protein-coding MSRB2 methionine sulfoxide reductase B2 O methionine-R-sulfoxide reductase B2, mitochondrial|pilin-like transcription factor 20121230 -9606 22924 MAPRE3 - EB3|EBF3|EBF3-S|RP3 HGNC:6892|MIM:605788|Ensembl:ENSG00000084764|HPRD:16156|Vega:OTTHUMG00000097067 2 2p23.3-p23.1 microtubule-associated protein, RP/EB family, member 3 protein-coding MAPRE3 microtubule-associated protein, RP/EB family, member 3 O APC binding protein|EB1 protein family member 3|end-binding protein 3|microtubule-associated protein RP/EB family member 3 20121230 -9606 22925 PLA2R1 - CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R HGNC:9042|MIM:604939|Ensembl:ENSG00000153246|HPRD:09222|Vega:OTTHUMG00000154087 2 2q23-q24 phospholipase A2 receptor 1, 180kDa protein-coding PLA2R1 phospholipase A2 receptor 1, 180kDa O 180 kDa secretory phospholipase A2 receptor|C-type lectin domain family 13 member C|M-type receptor|secretory phospholipase A2 receptor 20121230 -9606 22926 ATF6 - ATF6A HGNC:791|MIM:605537|Ensembl:ENSG00000118217|HPRD:16118|Vega:OTTHUMG00000023961 1 1q22-q23 activating transcription factor 6 protein-coding ATF6 activating transcription factor 6 O cAMP-dependent transcription factor ATF-6 alpha|cyclic AMP-dependent transcription factor ATF-6 alpha 20121230 -9606 22927 HABP4 RP11-172F4.4 IHABP4|Ki-1/57|SERBP1L HGNC:17062|Ensembl:ENSG00000130956|HPRD:13628|Vega:OTTHUMG00000020298 9 9q22.3-q31 hyaluronan binding protein 4 protein-coding HABP4 hyaluronan binding protein 4 O IHABP-4|chromodomain helicase DNA binding protein 3 interacting protein|intracellular antigen detected by monoclonal antibody Ki-1|intracellular hyaluronan-binding protein 4|ki-1/57 intracellular antigen 20121230 -9606 22928 SEPHS2 - SPS2|SPS2b HGNC:19686|MIM:606218|Ensembl:ENSG00000179918|HPRD:12096|Vega:OTTHUMG00000176988 16 16p11.2 selenophosphate synthetase 2 protein-coding SEPHS2 selenophosphate synthetase 2 O selenide, water dikinase 2|selenium donor protein 2|selenophosphate synthase 2 20121230 -9606 22929 SEPHS1 RP11-24J20.2 SELD|SPS|SPS1 HGNC:19685|MIM:600902|Ensembl:ENSG00000086475|HPRD:02944|Vega:OTTHUMG00000017696 10 10p14 selenophosphate synthetase 1 protein-coding SEPHS1 selenophosphate synthetase 1 O selenide, water dikinase 1|selenium donor protein 1|selenophosphate synthase 1|selenophosphate synthetase 1 +E9|selenophosphate synthetase 1 +E9a|selenophosphate synthetase 1 delta E2|selenophosphate synthetase 1 delta E8|selenophosphate synthetase 1 major 20121230 -9606 22930 RAB3GAP1 - P130|RAB3GAP|RAB3GAP130|WARBM1 HGNC:17063|MIM:602536|Ensembl:ENSG00000115839|HPRD:16002|Vega:OTTHUMG00000154889 2 2q21.3 RAB3 GTPase activating protein subunit 1 (catalytic) protein-coding RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) O RAB3 GTPase-activating protein 130 kDa subunit|rab3 GTPase-activating protein catalytic subunit|rab3-GAP p130 20121230 -9606 22931 RAB18 RP11-148B2.1 RAB18LI1|WARBM3 HGNC:14244|MIM:602207|Ensembl:ENSG00000099246|HPRD:03731|Vega:OTTHUMG00000017861 10 10p12.1 RAB18, member RAS oncogene family protein-coding RAB18 RAB18, member RAS oncogene family O RAB18 small GTPase|ras-related protein Rab-18 20121230 -9606 22932 POMZP3 - POM-ZP3|POM121 HGNC:9203|MIM:600587|Ensembl:ENSG00000146707|HPRD:15974|Vega:OTTHUMG00000023514 7 7q11.23 POM121 and ZP3 fusion protein-coding POMZP3 POM121 and ZP3 fusion O POM (POM121 homolog, rat) and ZP3 fusion|POM (POM121 rat homolog) and ZP3 fusion|POM-ZP3 fusion protein|POM121 and ZP3 fusion protein|POM121/ZP3 fusion protein 20121230 -9606 22933 SIRT2 - SIR2|SIR2L|SIR2L2 HGNC:10886|MIM:604480|Ensembl:ENSG00000068903|HPRD:10377|Vega:OTTHUMG00000150480 19 19q13 sirtuin 2 protein-coding SIRT2 sirtuin 2 O NAD-dependent deacetylase sirtuin-2|NAD-dependent protein deacetylase sirtuin-2|SIR2-like protein 2|regulatory protein SIR2 homolog 2|silent information regulator 2|sir2-related protein type 2|sirtuin type 2 20121230 -9606 22934 RPIA - RPI HGNC:10297|MIM:180430|Ensembl:ENSG00000153574|HPRD:01589|Vega:OTTHUMG00000130333 2 2p11.2 ribose 5-phosphate isomerase A protein-coding RPIA ribose 5-phosphate isomerase A O phosphoriboisomerase|ribose 5-phosphate epimerase|ribose-5-phosphate isomerase 20121230 -9606 22936 ELL2 - - HGNC:17064|MIM:601874|Ensembl:ENSG00000118985|HPRD:11798|Vega:OTTHUMG00000122085 5 5q15 elongation factor, RNA polymerase II, 2 protein-coding ELL2 elongation factor, RNA polymerase II, 2 O ELL-related RNA polymerase II, elongation factor|RNA polymerase II elongation factor ELL2 20121230 -9606 22937 SCAP PSEC0227 - HGNC:30634|MIM:601510|Ensembl:ENSG00000114650|HPRD:03300|Vega:OTTHUMG00000125539 3 3p21.31 SREBF chaperone protein-coding SCAP SREBF chaperone O SREBP cleavage-activating protein|sterol regulatory element binding protein cleavage-activating protein|sterol regulatory element-binding protein cleavage-activating protein 20121230 -9606 22938 SNW1 - Bx42|NCOA-62|PRPF45|Prp45|SKIIP|SKIP HGNC:16696|MIM:603055|Ensembl:ENSG00000100603|HPRD:04340|Vega:OTTHUMG00000171527 14 14q24.3 SNW domain containing 1 protein-coding SNW1 SNW domain containing 1 O SKI interacting protein|SKI-interacting protein|SNW domain-containing protein 1|homolog of Drosophila BX42|nuclear protein SkiP|nuclear receptor coactivator NCoA-62|nuclear receptor coactivator, 62-kD 20121230 -9606 22941 SHANK2 - AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 HGNC:14295|MIM:603290|Ensembl:ENSG00000162105|HPRD:04479|Vega:OTTHUMG00000154615 11 11q13.2 SH3 and multiple ankyrin repeat domains 2 protein-coding SHANK2 SH3 and multiple ankyrin repeat domains 2 O GKAP/SAPAP interacting protein|SH3 and multiple ankyrin repeat domains protein 2|cortactin SH3 domain-binding protein|cortactin-binding protein 1|proline-rich synapse associated protein 1|proline-rich synapse-associated protein 1 20121230 -9606 22943 DKK1 UNQ492/PRO1008 DKK-1|SK HGNC:2891|MIM:605189|Ensembl:ENSG00000107984|HPRD:05544|Vega:OTTHUMG00000018247 10 10q11.2 dickkopf 1 homolog (Xenopus laevis) protein-coding DKK1 dickkopf 1 homolog (Xenopus laevis) O dickkopf related protein-1|dickkopf-1 like|dickkopf-like protein 1|dickkopf-related protein 1|hDkk-1 20121230 -9606 22944 KIN - BTCD|KIN17 HGNC:6327|MIM:601720|Ensembl:ENSG00000151657|HPRD:03425|Vega:OTTHUMG00000017634 10 10p15-p14 KIN, antigenic determinant of recA protein homolog (mouse) protein-coding KIN KIN, antigenic determinant of recA protein homolog (mouse) O DNA/RNA-binding protein KIN17|binding to curved DNA 20121230 -9606 22945 GPAA1P1 - - HGNC:4447 2 2q13 glycosylphosphatidylinositol anchor attachment 1 pseudogene 1 pseudo GPAA1P1 glycosylphosphatidylinositol anchor attachment 1 pseudogene 1 O - 20121209 -9606 22947 DUX4 - DUX10 HGNC:3082|MIM:606009|Ensembl:ENSG00000258389|HPRD:16189|Vega:OTTHUMG00000161317 4 4q35 double homeobox 4 protein-coding DUX4 double homeobox 4 O double homeobox protein 10|double homeobox protein 4|double homeobox protein 4/10|double homeobox protein DUX10 20121230 -9606 22948 CCT5 - CCT-epsilon|CCTE|TCP-1-epsilon HGNC:1618|MIM:610150|Ensembl:ENSG00000150753|HPRD:06468|Vega:OTTHUMG00000131042 5 5p15.2 chaperonin containing TCP1, subunit 5 (epsilon) protein-coding CCT5 chaperonin containing TCP1, subunit 5 (epsilon) O T-complex protein 1 subunit epsilon|T-complex protein 1, epsilon subunit 20121230 -9606 22949 PTGR1 RP11-16L21.1 LTB4DH|PGR1|ZADH3 HGNC:18429|MIM:601274|Ensembl:ENSG00000106853|HPRD:03173|Vega:OTTHUMG00000020493 9 9q31.3 prostaglandin reductase 1 protein-coding PTGR1 prostaglandin reductase 1 O 15-oxoprostaglandin 13-reductase|NADP-dependent leukotriene B4 12-hydroxydehydrogenase|PRG-1|leukotriene B4 12-hydroxydehydrogenase|zinc binding alcohol dehydrogenase domain containing 3 20121230 -9606 22950 SLC4A1AP HLC3 - HGNC:13813|MIM:602655|Ensembl:ENSG00000163798|HPRD:04038|Vega:OTTHUMG00000151944 2 2p23.3 solute carrier family 4 (anion exchanger), member 1, adaptor protein protein-coding SLC4A1AP solute carrier family 4 (anion exchanger), member 1, adaptor protein O HLC-3|human lung cancer oncogene 3 protein|kanadaptin|kidney anion exchanger adapter protein|kidney anion exchanger adaptor protein|lung cancer oncogene 3|solute carrier family 4 (anion exchanger), member 1, adapter protein|solute carrier family 4 anion exchanger member 1 adapter protein 20121230 -9606 22952 CYP2G1P - CYP2G1|CYP2G2P|CYP2GP1 HGNC:2633|MIM:601133 19 19q13.2 cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene pseudo CYP2G1P cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene O - 20121230 -9606 22953 P2RX2 - P2X2 HGNC:15459|MIM:600844|Ensembl:ENSG00000187848|HPRD:15984|Vega:OTTHUMG00000168018 12 12q24.33 purinergic receptor P2X, ligand-gated ion channel, 2 protein-coding P2RX2 purinergic receptor P2X, ligand-gated ion channel, 2 O ATP receptor|P2X Receptor, subunit 2|P2X purinoceptor 2 20121230 -9606 22954 TRIM32 RP11-67K19.1 BBS11|HT2A|LGMD2H|TATIP HGNC:16380|MIM:602290|Ensembl:ENSG00000119401|HPRD:03797|Vega:OTTHUMG00000021026 9 9q33.1 tripartite motif containing 32 protein-coding TRIM32 tripartite motif containing 32 O 72 kDa Tat-interacting protein|E3 ubiquitin-protein ligase TRIM32|TAT-interactive protein, 72-KD|tripartite motif-containing 32|tripartite motif-containing protein 32|zinc finger protein HT2A|zinc-finger protein HT2A 20121230 -9606 22955 SCMH1 - Scml3 HGNC:19003|Ensembl:ENSG00000010803|HPRD:11540|Vega:OTTHUMG00000005720 1 1p34 sex comb on midleg homolog 1 (Drosophila) protein-coding SCMH1 sex comb on midleg homolog 1 (Drosophila) O polycomb protein SCMH1 20121230 -9606 22969 RPL41P3 - - HGNC:10358 22 22q13.1 ribosomal protein L41 pseudogene 3 pseudo RPL41P3 ribosomal protein L41 pseudogene 3 O - 20121230 -9606 22970 RPL41P2 - - HGNC:10357 15 15q11-q13 ribosomal protein L41 pseudogene 2 pseudo RPL41P2 ribosomal protein L41 pseudogene 2 O - 20121230 -9606 22971 RPL41P1 - RPL41L2|dJ1065O2.1 HGNC:10356 20 20p11.23-p11.21 ribosomal protein L41 pseudogene 1 pseudo RPL41P1 ribosomal protein L41 pseudogene 1 O - 20121230 -9606 22973 LAMB2P1 - LAMB2L HGNC:6488 3 3p21.3-p21.2 laminin, beta 2 pseudogene 1 pseudo LAMB2P1 laminin, beta 2 pseudogene 1 O - 20121230 -9606 22974 TPX2 RP11-243J16.10-002 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 HGNC:1249|MIM:605917|Ensembl:ENSG00000088325|HPRD:05802|Vega:OTTHUMG00000032190 20 20q11.2 TPX2, microtubule-associated, homolog (Xenopus laevis) protein-coding TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis) O TPX2, microtubule-associated protein homolog|differentially expressed in cancerous and non-cancerous lung cells 2|differentially expressed in lung cells|hepatocellular carcinoma-associated antigen 519|preferentially expressed in colorectal cancer|protein fls353|restricted expression proliferation associated protein 100|restricted expression proliferation-associated protein 100|targeting protein for Xklp2 20121230 -9606 22976 PAXIP1 CAGF28 CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2 HGNC:8624|MIM:608254|Ensembl:ENSG00000157212|HPRD:08491|Vega:OTTHUMG00000151322 7 7q36 PAX interacting (with transcription-activation domain) protein 1 protein-coding PAXIP1 PAX interacting (with transcription-activation domain) protein 1 O PAX transcription activation domain interacting protein 1 like|PAX-interacting protein 1|protein encoded by CAG trinucleotide repeats 20121230 -9606 22977 AKR7A3 - AFAR2 HGNC:390|MIM:608477|Ensembl:ENSG00000162482|HPRD:07089|Vega:OTTHUMG00000002523 1 1p36.13 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) protein-coding AKR7A3 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) O AFB1 aldehyde reductase 2|AFB1-AR 2|aflatoxin B1 aldehyde reductase 2|aflatoxin B1 aldehyde reductase member 3 20121230 -9606 22978 NT5C2 RP11-30H12.3 GMP|NT5B|PNT5|cN-II HGNC:8022|MIM:600417|Ensembl:ENSG00000076685|HPRD:02686|Vega:OTTHUMG00000018981 10 10q24.32 5'-nucleotidase, cytosolic II protein-coding NT5C2 5'-nucleotidase, cytosolic II O 5'-nucleotidase (purine), cytosolic type B|IMP-specific 5'-NT|cytosolic 5'-nucleotidase II|cytosolic purine 5'-nucleotidase|purine 5' nucleotidase 20121230 -9606 22979 EFR3B - KIAA0953 HGNC:29155|Ensembl:ENSG00000084710|Vega:OTTHUMG00000151988 2 2p23.3 EFR3 homolog B (S. cerevisiae) protein-coding EFR3B EFR3 homolog B (S. cerevisiae) O protein EFR3 homolog B 20121230 -9606 22980 TCF25 FKSG26 Hulp1|NULP1|PRO2620|hKIAA1049 HGNC:29181|MIM:612326|Ensembl:ENSG00000141002|HPRD:13830|Vega:OTTHUMG00000138986 16 16q24.3 transcription factor 25 (basic helix-loop-helix) protein-coding TCF25 transcription factor 25 (basic helix-loop-helix) O NULP1|TCF-25|nuclear localized protein 1|transcription factor 25 20121230 -9606 22981 NINL RP4-691N24.1 NLP|dJ691N24.1 HGNC:29163|MIM:609580|Ensembl:ENSG00000101004|HPRD:11120|Vega:OTTHUMG00000032127 20 20p11.22-p11.1 ninein-like protein-coding NINL ninein-like O ninein-like protein 20121230 -9606 22982 DIP2C RP11-486H9.2 KIAA0934 HGNC:29150|MIM:611380|Ensembl:ENSG00000151240|HPRD:17200|Vega:OTTHUMG00000017532 10 10p15.3 DIP2 disco-interacting protein 2 homolog C (Drosophila) protein-coding DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) O DIP2 homolog C|disco-interacting protein 2 homolog C 20121230 -9606 22983 MAST1 - SAST|SAST170 HGNC:19034|MIM:612256|Ensembl:ENSG00000105613|HPRD:17469|Vega:OTTHUMG00000180514 19 19p13.2 microtubule associated serine/threonine kinase 1 protein-coding MAST1 microtubule associated serine/threonine kinase 1 O microtubule-associated serine/threonine-protein kinase 1|syntrophin associated serine/threonine kinase|syntrophin-associated serine/threonine-protein kinase 20121230 -9606 22984 PDCD11 - ALG-4|ALG4|NFBP|RRP5 HGNC:13408|MIM:612333|Ensembl:ENSG00000148843|HPRD:18752|Vega:OTTHUMG00000018988 10 10q24.33 programmed cell death 11 protein-coding PDCD11 programmed cell death 11 O NF-kappa-B-binding protein|apoptosis-linked gene 4|programmed cell death protein 11|protein RRP5 homolog 20121230 -9606 22985 ACIN1 - ACINUS|ACN|fSAP152 HGNC:17066|MIM:604562|Ensembl:ENSG00000100813|HPRD:05191|Vega:OTTHUMG00000028716 14 14q11.2 apoptotic chromatin condensation inducer 1 protein-coding ACIN1 apoptotic chromatin condensation inducer 1 O apoptotic chromatin condensation inducer in the nucleus|functional spliceosome-associated protein 152 20121230 -9606 22986 SORCS3 RP11-107L7.1 SORCS HGNC:16699|MIM:606285|Ensembl:ENSG00000156395|HPRD:12100|Vega:OTTHUMG00000019011 10 10q23-q25 sortilin-related VPS10 domain containing receptor 3 protein-coding SORCS3 sortilin-related VPS10 domain containing receptor 3 O 6330404A12Rik|VPS10 domain receptor protein SORCS 3 (SORCS3)|VPS10 domain-containing receptor SorCS3 20121230 -9606 22987 SV2C - - HGNC:30670|MIM:610291|Ensembl:ENSG00000122012|HPRD:18753|Vega:OTTHUMG00000162384 5 5q13.3 synaptic vesicle glycoprotein 2C protein-coding SV2C synaptic vesicle glycoprotein 2C O synaptic vesicle protein 2C 20121230 -9606 22989 MYH15 - - HGNC:31073|MIM:609929|Ensembl:ENSG00000144821|Vega:OTTHUMG00000159226 3 3q13.13 myosin, heavy chain 15 protein-coding MYH15 myosin, heavy chain 15 O myosin, heavy polypeptide 15|myosin-15 20121230 -9606 22990 PCNX - PCNXL1 HGNC:19740|Ensembl:ENSG00000100731|HPRD:10139|Vega:OTTHUMG00000171242 14 14q24.2 pecanex homolog (Drosophila) protein-coding PCNX pecanex homolog (Drosophila) O pecanex-like 1|pecanex-like protein 1 20121230 -9606 22992 KDM2A - CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA HGNC:13606|MIM:605657|Ensembl:ENSG00000173120|HPRD:05741|Vega:OTTHUMG00000167103 11 11q13.2 lysine (K)-specific demethylase 2A protein-coding KDM2A lysine (K)-specific demethylase 2A O CXXC-type zinc finger protein 8|F-box and leucine-rich repeat protein 11|F-box/LRR-repeat protein 11|[Histone-H3]-lysine-36 demethylase 1A|jmjC domain-containing histone demethylation protein 1A|jumonji C domain-containing histone demethylase 1A|lysine-specific demethylase 2A 20121230 -9606 22993 HMGXB3 - HMGX3|SMF HGNC:28982|Ensembl:ENSG00000113716|Vega:OTTHUMG00000163493 5 5q32 HMG box domain containing 3 protein-coding HMGXB3 HMG box domain containing 3 O HMG domain-containing protein 3 20121230 -9606 22994 AZI1 - AZ1|Cep131|ZA1 HGNC:29511|MIM:613479|Ensembl:ENSG00000141577|HPRD:16532|Vega:OTTHUMG00000132728 17 17q25.3 5-azacytidine induced 1 protein-coding AZI1 5-azacytidine induced 1 O 5-azacytidine-induced protein 1|centrosomal protein 131 kDa|centrosomal protein of 131 kDa|pre-acrosome localization protein 1 20121230 -9606 22995 CEP152 - MCPH4|MCPH9|SCKL5 HGNC:29298|MIM:613529|Ensembl:ENSG00000103995|HPRD:16778|Vega:OTTHUMG00000172219 15 15q21.1 centrosomal protein 152kDa protein-coding CEP152 centrosomal protein 152kDa O asterless|centrosomal protein of 152 kDa|microcephaly, primary autosomal recessive 4 20121230 -9606 22996 TTC39A - C1orf34|DEME-6 HGNC:18657|Ensembl:ENSG00000085831|Vega:OTTHUMG00000008193 1 1p32.3 tetratricopeptide repeat domain 39A protein-coding TTC39A tetratricopeptide repeat domain 39A O TPR repeat protein 39A|differentially expressed in MCF7 with estradiol protein 6|tetratricopeptide repeat protein 39A 20121230 -9606 22997 IGSF9B UNQ1946 - HGNC:32326|MIM:613773|Ensembl:ENSG00000080854|Vega:OTTHUMG00000167124 11 11q25 immunoglobulin superfamily, member 9B protein-coding IGSF9B immunoglobulin superfamily, member 9B O immunoglobulin superfamily member 9B|protein turtle homolog B 20121230 -9606 22998 LIMCH1 - LIMCH1A|LMO7B HGNC:29191|Ensembl:ENSG00000064042|HPRD:11125|Vega:OTTHUMG00000160575 4 4p13 LIM and calponin homology domains 1 protein-coding LIMCH1 LIM and calponin homology domains 1 O LIM and calponin homology domains-containing protein 1 20121230 -9606 22999 RIMS1 RP5-1046G13.1 CORD7|RAB3IP2|RIM|RIM1 HGNC:17282|MIM:606629|Ensembl:ENSG00000079841|HPRD:09435|Vega:OTTHUMG00000015009 6 6q12-q13 regulating synaptic membrane exocytosis 1 protein-coding RIMS1 regulating synaptic membrane exocytosis 1 O RAB3-interacting protein 2|rab-3-interacting protein 2|rab3-interacting molecule 1|regulating synaptic membrane exocytosis protein 1 20121230 -9606 23001 WDFY3 - ALFY|ZFYVE25 HGNC:20751|Ensembl:ENSG00000163625|HPRD:10304|Vega:OTTHUMG00000130424 4 4q21.23 WD repeat and FYVE domain containing 3 protein-coding WDFY3 WD repeat and FYVE domain containing 3 O WD repeat and FYVE domain-containing protein 3|autophagy-linked FYVE protein 20121230 -9606 23002 DAAM1 - - HGNC:18142|MIM:606626|Ensembl:ENSG00000100592|HPRD:09433|Vega:OTTHUMG00000140326 14 14q23.1 dishevelled associated activator of morphogenesis 1 protein-coding DAAM1 dishevelled associated activator of morphogenesis 1 O disheveled-associated activator of morphogenesis 1 20121230 -9606 23005 MAPKBP1 - JNKBP-1 HGNC:29536|Ensembl:ENSG00000137802|HPRD:17465|Vega:OTTHUMG00000160227 15 15q15.1 mitogen-activated protein kinase binding protein 1 protein-coding MAPKBP1 mitogen-activated protein kinase binding protein 1 O JNK-binding protein 1|mitogen activated protein kinase binding protein 1|mitogen-activated protein kinase-binding protein 1 20121230 -9606 23007 PLCH1 - PLCL3 HGNC:29185|MIM:612835|Ensembl:ENSG00000114805|HPRD:11438|Vega:OTTHUMG00000158477 3 3q25.31 phospholipase C, eta 1 protein-coding PLCH1 phospholipase C, eta 1 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase eta-1|PLC eta 1|PLC-L3|PLC-eta-1|phosphoinositide phospholipase C-eta-1|phospholipase C-eta-1|phospholipase C-eta1a|phospholipase C-eta1b|phospholipase C-like 3|phospholipase C-like protein 3 20121230 -9606 23008 KLHDC10 - slim HGNC:22194|Ensembl:ENSG00000128607|HPRD:17182|Vega:OTTHUMG00000157654 7 7q32.2 kelch domain containing 10 protein-coding KLHDC10 kelch domain containing 10 O PNAS-119|kelch domain-containing protein 10|scruin like at the midline homolog 20121230 -9606 23011 RAB21 - - HGNC:18263|MIM:612398|Ensembl:ENSG00000080371|HPRD:06695|Vega:OTTHUMG00000169572 12 12q21.1 RAB21, member RAS oncogene family protein-coding RAB21 RAB21, member RAS oncogene family O ras-related protein Rab-21 20121230 -9606 23012 STK38L - NDR2 HGNC:17848|Ensembl:ENSG00000211455|HPRD:10256|Vega:OTTHUMG00000169284 12 12p11.23 serine/threonine kinase 38 like protein-coding STK38L serine/threonine kinase 38 like O NDR2 protein kinase|nuclear Dbf2-related 2|nuclear Dbf2-related kinase 2|serine/threonine-protein kinase 38-like 20121230 -9606 23013 SPEN RP1-134O19.1 HIAA0929|MINT|RBM15C|SHARP HGNC:17575|MIM:613484|Ensembl:ENSG00000065526|HPRD:10230|Vega:OTTHUMG00000009376 1 1p36 spen homolog, transcriptional regulator (Drosophila) protein-coding SPEN spen homolog, transcriptional regulator (Drosophila) O Msx2 interacting nuclear target (MINT) homolog|SMART/HDAC1 associated repressor protein|SMART/HDAC1-associated repressor protein|msx2-interacting protein|nuclear receptor transcription cofactor 20121230 -9606 23014 FBXO21 - FBX21 HGNC:13592|MIM:609095|Ensembl:ENSG00000135108|HPRD:09948|Vega:OTTHUMG00000169495 12 12q24.22 F-box protein 21 protein-coding FBXO21 F-box protein 21 O F-box only protein 21 20121230 -9606 23015 GOLGA8A - GM88 HGNC:31972|Ensembl:ENSG00000175265|HPRD:09974|Vega:OTTHUMG00000129447 15 15q11.2 golgin A8 family, member A protein-coding GOLGA8A golgin A8 family, member A O 88 kDa Golgi matrix protein|88-kDa golgi protein|GM88 autoantigen|Golgin subfamily A member 8A|golgi autoantigen, golgin subfamily a, 8A|golgin-67 20121230 -9606 23016 EXOSC7 - EAP1|RRP42|Rrp42p|hRrp42p|p8 HGNC:28112|MIM:606488|Ensembl:ENSG00000075914|HPRD:09401|Vega:OTTHUMG00000133095 3 3p21.31 exosome component 7 protein-coding EXOSC7 exosome component 7 O exosome complex component RRP42|exosome complex exonuclease RRP42|ribosomal RNA-processing protein 42 20121230 -9606 23017 FAIM2 - LFG|LFG2|NGP35|NMP35|TMBIM2 HGNC:17067|MIM:604306|Ensembl:ENSG00000135472|HPRD:09184|Vega:OTTHUMG00000169808 12 12q13 Fas apoptotic inhibitory molecule 2 protein-coding FAIM2 Fas apoptotic inhibitory molecule 2 O neural membrane protein 35|protein lifeguard 2|transmembrane BAX inhibitor motif-containing protein 2 20121230 -9606 23019 CNOT1 AD-005 CDC39|NOT1|NOT1H HGNC:7877|MIM:604917|Ensembl:ENSG00000125107|HPRD:11999|Vega:OTTHUMG00000133487 16 16q21 CCR4-NOT transcription complex, subunit 1 protein-coding CNOT1 CCR4-NOT transcription complex, subunit 1 O CCR4-NOT transcription complex subunit 1|CCR4-associated factor 1|NOT1 (negative regulator of transcription 1, yeast) homolog|adrenal gland protein AD-005|negative regulator of transcription subunit 1 homolog 20121230 -9606 23020 SNRNP200 - ASCC3L1|BRR2|HELIC2|RP33|U5-200KD HGNC:30859|MIM:601664|Ensembl:ENSG00000144028|HPRD:03391|Vega:OTTHUMG00000130455 2 2q11.2 small nuclear ribonucleoprotein 200kDa (U5) protein-coding SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) O BRR2 homolog|U5 small nuclear ribonucleoprotein 200 kDa helicase|U5 snRNP-specific 200 kDa protein|activating signal cointegrator 1 complex subunit 3-like 1 20121230 -9606 23022 PALLD CGI-151 CGI151|MYN|PNCA1|SIH002 HGNC:17068|MIM:608092|Ensembl:ENSG00000129116|HPRD:09731|Vega:OTTHUMG00000161097 4 4q32.3 palladin, cytoskeletal associated protein protein-coding PALLD palladin, cytoskeletal associated protein O myoneurin|palladin|sarcoma antigen NY-SAR-77 20121230 -9606 23023 TMCC1 - - HGNC:29116|Ensembl:ENSG00000172765|HPRD:15518|Vega:OTTHUMG00000159579 3 3q22.1 transmembrane and coiled-coil domain family 1 protein-coding TMCC1 transmembrane and coiled-coil domain family 1 O transmembrane and coiled-coil domains protein 1 20121230 -9606 23024 PDZRN3 - LNX3|SEMACAP3 HGNC:17704|MIM:609729|Ensembl:ENSG00000121440|HPRD:15115|Vega:OTTHUMG00000158865 3 3p13 PDZ domain containing ring finger 3 protein-coding PDZRN3 PDZ domain containing ring finger 3 O E3 ubiquitin-protein ligase PDZRN3|PDZ domain-containing RING finger protein 3|ligand of Numb protein X 3|likely ortholog of mouse semaF cytoplasmic domain associated protein 3|semaphorin cytoplasmic domain-associated protein 3 20121230 -9606 23025 UNC13A - Munc13-1 HGNC:23150|MIM:609894|Ensembl:ENSG00000130477|Vega:OTTHUMG00000163877 19 19p13.11 unc-13 homolog A (C. elegans) protein-coding UNC13A unc-13 homolog A (C. elegans) O protein unc-13 homolog A 20121230 -9606 23026 MYO16 RP11-54H7.1 MYR8|Myo16b|NYAP3 HGNC:29822|Ensembl:ENSG00000041515|HPRD:14795|Vega:OTTHUMG00000017333 13 13q33.3 myosin XVI protein-coding MYO16 myosin XVI O MYO16 variant protein|myosin heavy chain Myr 8|myosin-XVI|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 3|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 3|unconventional myosin-16|unconventional myosin-XVI 20121230 -9606 23028 KDM1A RP1-184J9.1 AOF2|BHC110|KDM1|LSD1 HGNC:29079|MIM:609132|Ensembl:ENSG00000004487|HPRD:09800|Vega:OTTHUMG00000003220 1 1p36.12 lysine (K)-specific demethylase 1A protein-coding KDM1A lysine (K)-specific demethylase 1A O BRAF35-HDAC complex protein BHC110|FAD-binding protein BRAF35-HDAC complex, 110 kDa subunit|amine oxidase (flavin containing) domain 2|flavin-containing amine oxidase domain-containing protein 2|lysine (K)-specific demethylase 1|lysine-specific histone demethylase 1|lysine-specific histone demethylase 1A 20121230 -9606 23029 RBM34 RP11-739C15.1 - HGNC:28965|Ensembl:ENSG00000188739|HPRD:11065|Vega:OTTHUMG00000039620 1 1q42.3 RNA binding motif protein 34 protein-coding RBM34 RNA binding motif protein 34 O RNA-binding motif protein 34|RNA-binding protein 34 20121230 -9606 23030 KDM4B - JMJD2B HGNC:29136|MIM:609765|Ensembl:ENSG00000127663|HPRD:11056|Vega:OTTHUMG00000180281 19 19p13.3 lysine (K)-specific demethylase 4B protein-coding KDM4B lysine (K)-specific demethylase 4B O jmjC domain-containing histone demethylation protein 3B|jumonji domain containing 2B|jumonji domain-containing protein 2B|lysine-specific demethylase 4B 20121230 -9606 23031 MAST3 - - HGNC:19036|MIM:612258|Ensembl:ENSG00000099308 19 19p13.11 microtubule associated serine/threonine kinase 3 protein-coding MAST3 microtubule associated serine/threonine kinase 3 O microtubule-associated serine/threonine-protein kinase 3 20121230 -9606 23032 USP33 - VDU1 HGNC:20059|Ensembl:ENSG00000077254|HPRD:10297|Vega:OTTHUMG00000009651 1 1p31.1 ubiquitin specific peptidase 33 protein-coding USP33 ubiquitin specific peptidase 33 O VHL-interacting deubiquitinating enzyme 1|deubiquitinating enzyme 33|pVHL-interacting deubiquitinating enzyme 1|ubiquitin carboxyl-terminal hydrolase 33|ubiquitin thioesterase 33|ubiquitin thiolesterase 33|ubiquitin-specific-processing protease 33 20121230 -9606 23033 DOPEY1 RP1-202D23.2 KIAA1117|dJ202D23.2 HGNC:21194|Ensembl:ENSG00000083097|HPRD:10022|Vega:OTTHUMG00000016365 6 6q15 dopey family member 1 protein-coding DOPEY1 dopey family member 1 O homolog of yeast DOP1|protein dopey-1 20121230 -9606 23034 SAMD4A - SAMD4|SMAUG|SMAUG1|SMG|SMGA HGNC:23023|MIM:610747|Ensembl:ENSG00000020577|Ensembl:ENSG00000262355|HPRD:10209|Vega:OTTHUMG00000170999 14 14q22.2 sterile alpha motif domain containing 4A protein-coding SAMD4A sterile alpha motif domain containing 4A O SAM domain-containing protein 4A|protein Smaug homolog 1 20121230 -9606 23035 PHLPP2 - PHLPPL HGNC:29149|MIM:611066|Ensembl:ENSG00000040199|HPRD:11118|Vega:OTTHUMG00000176867 16 16q22.2 PH domain and leucine rich repeat protein phosphatase 2 protein-coding PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 O PH domain leucine-rich repeat-containing protein phosphatase 2 20121230 -9606 23036 ZNF292 - Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 HGNC:18410|Ensembl:ENSG00000188994|Vega:OTTHUMG00000015164 6 6q14.3 zinc finger protein 292 protein-coding ZNF292 zinc finger protein 292 O 16 zinc-finger domain protein|putative protein product of Nbla00365 20121230 -9606 23037 PDZD2 - AIPC|PAPIN|PDZK3|PIN1 HGNC:18486|MIM:610697|Ensembl:ENSG00000133401|HPRD:10142|Vega:OTTHUMG00000161981 5 5p13.3 PDZ domain containing 2 protein-coding PDZD2 PDZ domain containing 2 O PDZ domain containing 3|PDZ domain-containing protein 2|PDZ domain-containing protein 3|activated in prostate cancer protein 20121230 -9606 23038 WDTC1 RP11-4K3__A.1 ADP|DCAF9 HGNC:29175|Ensembl:ENSG00000142784|HPRD:10307|Vega:OTTHUMG00000004273 1 1p36.11 WD and tetratricopeptide repeats 1 protein-coding WDTC1 WD and tetratricopeptide repeats 1 O DDB1 and CUL4 associated factor 9|WD and tetratricopeptide repeats protein 1|adipose homolog 20121230 -9606 23039 XPO7 - EXP7|RANBP16 HGNC:14108|MIM:606140|Ensembl:ENSG00000130227|HPRD:05846|Vega:OTTHUMG00000163789 8 8p21 exportin 7 protein-coding XPO7 exportin 7 O RAN binding protein 16|exportin-7 20121230 -9606 23040 MYT1L - NZF1 HGNC:7623|MIM:613084|Ensembl:ENSG00000186487|HPRD:14797|Vega:OTTHUMG00000151407 2 2p25.3 myelin transcription factor 1-like protein-coding MYT1L myelin transcription factor 1-like O myT1-L|myelin transcription factor 1-like protein|neural zinc finger transcription factor 1 20121230 -9606 23041 MON2 - - HGNC:29177|Ensembl:ENSG00000061987|HPRD:11123|Vega:OTTHUMG00000169992 12 12q14.1 MON2 homolog (S. cerevisiae) protein-coding MON2 MON2 homolog (S. cerevisiae) O protein MON2 homolog 20121230 -9606 23042 PDXDC1 - LP8165 HGNC:28995|MIM:614244|Ensembl:ENSG00000179889|HPRD:13789|Vega:OTTHUMG00000166304 16 16p13.11 pyridoxal-dependent decarboxylase domain containing 1 protein-coding PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 O pyridoxal-dependent decarboxylase domain-containing protein 1 20121230 -9606 23043 TNIK - - HGNC:30765|MIM:610005|Ensembl:ENSG00000154310|HPRD:18206|Vega:OTTHUMG00000159036 3 3q26.31 TRAF2 and NCK interacting kinase protein-coding TNIK TRAF2 and NCK interacting kinase O TRAF2 and NCK-interacting protein kinase 20121230 -9606 23046 KIF21B - - HGNC:29442|MIM:608322|Ensembl:ENSG00000116852|Vega:OTTHUMG00000035787 1 1q32.1 kinesin family member 21B protein-coding KIF21B kinesin family member 21B O kinesin-like protein KIF21B 20121230 -9606 23047 PDS5B RP1-267P19.1 APRIN|AS3|CG008 HGNC:20418|MIM:605333|Ensembl:ENSG00000083642|HPRD:05624|Vega:OTTHUMG00000016704 13 13q12.3 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) protein-coding PDS5B PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) O androgen induced inhibitor of proliferation|androgen-induced proliferation inhibitor|androgen-induced prostate proliferative shutoff-associated protein AS3|androgen-induced shutoff 3|sister chromatid cohesion protein PDS5 homolog B 20121230 -9606 23048 FNBP1 - FBP17 HGNC:17069|MIM:606191|Ensembl:ENSG00000187239|HPRD:10446|Vega:OTTHUMG00000020800 9 9q34 formin binding protein 1 protein-coding FNBP1 formin binding protein 1 O formin-binding protein 1|formin-binding protein 17 20121230 -9606 23049 SMG1 - 61E3.4|ATX|LIP HGNC:30045|MIM:607032|Ensembl:ENSG00000157106|HPRD:06123|Vega:OTTHUMG00000166900 16 16p12.3 smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) protein-coding SMG1 smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) O PI-3-kinase-related kinase SMG-1|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase|lambda-interacting protein|lambda/iota protein kinase C-interacting protein|phosphatidylinositol 3-kinase-related kinase|phosphatidylinositol 3-kinase-related protein kinase|serine/threonine-protein kinase SMG1 20121230 -9606 23051 ZHX3 RP3-511B24.3 TIX1 HGNC:15935|MIM:609598|Ensembl:ENSG00000174306|HPRD:10320 20 20q12 zinc fingers and homeoboxes 3 protein-coding ZHX3 zinc fingers and homeoboxes 3 O triple homeobox 1|triple homeobox protein 1|zinc finger and homeodomain protein 3|zinc fingers and homeoboxes protein 3 20121230 -9606 23052 ENDOD1 - - HGNC:29129|Ensembl:ENSG00000149218|Vega:OTTHUMG00000167835 11 11q21 endonuclease domain containing 1 protein-coding ENDOD1 endonuclease domain containing 1 O endonuclease domain-containing 1 protein 20121230 -9606 23053 ZSWIM8 - KIAA0913 HGNC:23528|Ensembl:ENSG00000214655|HPRD:17199|HPRD:17316|Vega:OTTHUMG00000018486 10 10q22.2 zinc finger, SWIM-type containing 8 protein-coding ZSWIM8 zinc finger, SWIM-type containing 8 O 4832404P21Rik|zinc finger SWIM domain-containing protein KIAA0913 20121230 -9606 23054 NCOA6 RP5-1181N3.2 AIB3|ASC2|NRC|PRIP|RAP250|TRBP HGNC:15936|MIM:605299|Ensembl:ENSG00000198646|HPRD:05599|Vega:OTTHUMG00000032311 20 20q11 nuclear receptor coactivator 6 protein-coding NCOA6 nuclear receptor coactivator 6 O NRC RAP250|PPAR-interacting protein|activating signal cointegrator 2|activating signal cointegrator-2|amplified in breast cancer protein 3|amplified in breast cancer-3 protein|cancer-amplified transcriptional coactivator ASC-2|nuclear receptor coactivator RAP250|nuclear receptor-activating protein, 250 kDa|peroxisome proliferator-activated receptor interacting protein|peroxisome proliferator-activated receptor-interacting protein|thyroid hormone receptor binding protein|thyroid hormone receptor-binding protein 20121230 -9606 23057 NMNAT2 RP11-181K3.3 C1orf15|PNAT2 HGNC:16789|MIM:608701|Ensembl:ENSG00000157064|HPRD:09786|Vega:OTTHUMG00000035519 1 1q25 nicotinamide nucleotide adenylyltransferase 2 protein-coding NMNAT2 nicotinamide nucleotide adenylyltransferase 2 O NMN adenylyltransferase 2|NaMN adenylyltransferase 2|nicotinamide mononucleotide adenylyltransferase 2|nicotinate-nucleotide adenylyltransferase 2|pyridine nucleotide adenylyltransferase 2 20121230 -9606 23059 CLUAP1 - FAP22 HGNC:19009|Ensembl:ENSG00000103351|HPRD:10013|Vega:OTTHUMG00000177581 16 16p13.3 clusterin associated protein 1 protein-coding CLUAP1 clusterin associated protein 1 O clusterin-associated protein 1|flagellar associated protein 22, qilin-like protein, homolog 20121230 -9606 23060 ZNF609 - - HGNC:29003|Ensembl:ENSG00000180357|HPRD:18754|Vega:OTTHUMG00000172370 15 15q22.31 zinc finger protein 609 protein-coding ZNF609 zinc finger protein 609 O - 20121230 -9606 23061 TBC1D9B - - HGNC:29097|Ensembl:ENSG00000197226|HPRD:10015|Vega:OTTHUMG00000130911 5 5q35.3 TBC1 domain family, member 9B (with GRAM domain) protein-coding TBC1D9B TBC1 domain family, member 9B (with GRAM domain) O TBC1 domain family member 9B 20121230 -9606 23062 GGA2 - VEAR HGNC:16064|MIM:606005|Ensembl:ENSG00000103365|HPRD:09347|Vega:OTTHUMG00000096957 16 16p12 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding GGA2 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 O ADP-ribosylation factor-binding protein GGA2|VHS domain and ear domain of gamma-adaptin|VHS domain and ear domain-containing protein|gamma-adaptin-related protein 2|golgi associated, gamma adaptin ear containing, ARF binding protein 2|golgi-localized, gamma ear-containing, ARF-binding protein 2 20121230 -9606 23063 WAPAL RP11-396M20.1 FOE|KIAA0261|WAPL HGNC:23293|MIM:610754|Ensembl:ENSG00000062650|HPRD:11072|Vega:OTTHUMG00000018651 10 10q23.2 wings apart-like homolog (Drosophila) protein-coding WAPAL wings apart-like homolog (Drosophila) O friend of EBNA2 (Epstein-Barr virus nuclear protein 2)|friend of EBNA2 protein|wings apart-like protein homolog 20121230 -9606 23064 SETX RP11-203M2.2 ALS4|AOA2|SCAR1|bA479K20.2 HGNC:445|MIM:608465|Ensembl:ENSG00000107290|HPRD:07622|Vega:OTTHUMG00000020834 9 9q34.13 senataxin protein-coding SETX senataxin O SEN1 homolog|amyotrophic lateral sclerosis 4 protein|probable helicase senataxin 20121230 -9606 23065 EMC1 PSEC0263 KIAA0090|RP1-43E13.1 HGNC:28957|Ensembl:ENSG00000127463|HPRD:08306|Vega:OTTHUMG00000002497 1 1p36.13 ER membrane protein complex subunit 1 protein-coding EMC1 ER membrane protein complex subunit 1 O - 20121230 -9606 23066 CAND2 - TIP120B|Tp120b HGNC:30689|MIM:610403|Ensembl:ENSG00000144712|Vega:OTTHUMG00000155397 3 3p25.2 cullin-associated and neddylation-dissociated 2 (putative) protein-coding CAND2 cullin-associated and neddylation-dissociated 2 (putative) O TBP interacting protein|TBP-interacting protein 120B|TBP-interacting protein of 120 kDa B|cullin-associated NEDD8-dissociated protein 2|cullin-associated and neddylation-dissociated protein 2|epididymis tissue protein Li 169|p120 CAND2 20121230 -9606 23067 SETD1B - KMT2G|Set1B HGNC:29187|MIM:611055|Ensembl:ENSG00000139718|Vega:OTTHUMG00000169080 12 12q24.31 SET domain containing 1B protein-coding SETD1B SET domain containing 1B O SET domain-containing protein 1B|hSET1B|histone-lysine N-methyltransferase SETD1B|lysine N-methyltransferase 2G 20121230 -9606 23070 FTSJD2 RP1-153P14.6 KIAA0082|MTr1|hMTr1 HGNC:21077|Ensembl:ENSG00000137200|HPRD:08305|Vega:OTTHUMG00000014624 6 6p21.2 FtsJ methyltransferase domain containing 2 protein-coding FTSJD2 FtsJ methyltransferase domain containing 2 O ISG95|S-adenosyl-L-methionine-dependent methyltransferase FTSJD2|cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1|cap1 2'O-ribose methyltransferase 1|ftsJ methyltransferase domain-containing protein 2|interferon-stimulated gene 95 kDa protein 20121230 -9606 23071 ERP44 UNQ532/PRO1075 PDIA10|TXNDC4 HGNC:18311|MIM:609170|Ensembl:ENSG00000023318|HPRD:10290|Vega:OTTHUMG00000020363 9 9q31.1 endoplasmic reticulum protein 44 protein-coding ERP44 endoplasmic reticulum protein 44 O ER protein 44|endoplasmic reticulum resident protein 44|endoplasmic reticulum resident protein 44 kDa|protein disulfide isomerase family A, member 10|thioredoxin domain containing 4 (endoplasmic reticulum)|thioredoxin domain-containing protein 4 20121230 -9606 23072 HECW1 - NEDL1 HGNC:22195|MIM:610384|Ensembl:ENSG00000002746|HPRD:11385|Vega:OTTHUMG00000128917 7 7p13 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 O E3 ubiquitin-protein ligase HECW1|HECT type E3 ubiquitin ligase|HECT, C2 and WW domain-containing protein 1|NEDD4-like E3 ubiquitin-protein ligase 1|NEDD4-like ubiquitin-protein ligase 1 20121230 -9606 23074 UHRF1BP1L - SHIP164 HGNC:29102|Ensembl:ENSG00000111647|HPRD:13811|Vega:OTTHUMG00000170195 12 12q23.1 UHRF1 binding protein 1-like protein-coding UHRF1BP1L UHRF1 binding protein 1-like O UHRF1 (ICBP90) binding protein 1-like|UHRF1-binding protein 1-like|syntaxin 6Habc-interacting protein of 164 kDa 20121230 -9606 23075 SWAP70 HSPC321 SWAP-70 HGNC:17070|MIM:604762|Ensembl:ENSG00000133789|HPRD:10378|Vega:OTTHUMG00000165865 11 11p15 SWAP switching B-cell complex 70kDa subunit protein-coding SWAP70 SWAP switching B-cell complex 70kDa subunit O switch-associated protein 70 20121230 -9606 23076 RRP1B - KIAA0179|NNP1L|Nnp1|RRP1 HGNC:23818|MIM:610654|Ensembl:ENSG00000160208|HPRD:10009|Vega:OTTHUMG00000086872 21 21q22.3 ribosomal RNA processing 1 homolog B (S. cerevisiae) protein-coding RRP1B ribosomal RNA processing 1 homolog B (S. cerevisiae) O RRP1-like protein B|ribosomal RNA processing protein 1 homolog B 20121230 -9606 23077 MYCBP2 AC001226.5 PAM HGNC:23386|MIM:610392|Ensembl:ENSG00000005810|HPRD:10104|Vega:OTTHUMG00000017105 13 13q22 MYC binding protein 2, E3 ubiquitin protein ligase protein-coding MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase O myc-binding protein 2|pam/highwire/rpm-1 protein|probable E3 ubiquitin-protein ligase MYCBP2|protein associated with Myc 20121230 -9606 23078 VWA8 RP11-125A7.3 KIAA0564 HGNC:29071|Ensembl:ENSG00000102763|HPRD:17194|Vega:OTTHUMG00000016799 13 13q14.11 von Willebrand factor A domain containing 8 protein-coding VWA8 von Willebrand factor A domain containing 8 O von Willebrand factor A domain-containing protein 8 20121230 -9606 23080 AVL9 - KIAA0241 HGNC:28994|MIM:612927|Ensembl:ENSG00000105778|HPRD:13788|Vega:OTTHUMG00000152929 7 7p14.3 AVL9 homolog (S. cerevisiase) protein-coding AVL9 AVL9 homolog (S. cerevisiase) O late secretory pathway protein AVL9 homolog 20121230 -9606 23081 KDM4C RP11-169L18.1 GASC1|JHDM3C|JMJD2C|bA146B14.1 HGNC:17071|MIM:605469|Ensembl:ENSG00000107077|HPRD:12016|Vega:OTTHUMG00000019536 9 9p24.1 lysine (K)-specific demethylase 4C protein-coding KDM4C lysine (K)-specific demethylase 4C O GASC-1 protein|JmjC domain-containing histone demethylation protein 3C|gene amplified in squamous cell carcinoma 1 protein|jumonji domain containing 2C|jumonji domain-containing protein 2C|lysine-specific demethylase 4C 20121230 -9606 23082 PPRC1 - PRC|RP11-302K17.6 HGNC:30025|Ensembl:ENSG00000148840|HPRD:15173|Vega:OTTHUMG00000018948 10 10q24.32 peroxisome proliferator-activated receptor gamma, coactivator-related 1 protein-coding PPRC1 peroxisome proliferator-activated receptor gamma, coactivator-related 1 O PGC-1 related co-activator|PGC-1-related coactivator|peroxisome proliferative activated receptor, gamma, coactivator-related 1|peroxisome proliferator-activated receptor gamma coactivator-related protein 1 20121230 -9606 23085 ERC1 - Cast2|ELKS|RAB6IP2 HGNC:17072|MIM:607127|Ensembl:ENSG00000082805|HPRD:06181|Vega:OTTHUMG00000130138 12 12p13.3 ELKS/RAB6-interacting/CAST family member 1 protein-coding ERC1 ELKS/RAB6-interacting/CAST family member 1 O ELKS/Rab6-interacting/CAST family member 1|RAB6 interacting protein 2|Rab6-interacting protein 2 20121230 -9606 23086 EXPH5 - SLAC2-B|SLAC2B HGNC:30578|MIM:612878|Ensembl:ENSG00000110723|HPRD:08341|Vega:OTTHUMG00000166536 11 11q22.3 exophilin 5 protein-coding EXPH5 exophilin 5 O exophilin-5|slp homolog lacking C2 domains b|synaptotagmin-like homologue lacking C2 domains b|synaptotagmin-like protein homolog lacking C2 domains b 20121230 -9606 23087 TRIM35 - HLS5|MAIR HGNC:16285|Ensembl:ENSG00000104228|HPRD:15553|Vega:OTTHUMG00000102047 8 8p21.2 tripartite motif containing 35 protein-coding TRIM35 tripartite motif containing 35 O hemopoietic lineage switch protein 5|tripartite motif-containing 35|tripartite motif-containing protein 35 20121230 -9606 23089 PEG10 - EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3 HGNC:14005|MIM:609810|Ensembl:ENSG00000242265|Vega:OTTHUMG00000155578 7 7q21 paternally expressed 10 protein-coding PEG10 paternally expressed 10 O MEF3 like 1|MEF3-like protein 1|embryonal carcinoma differentiation regulated|embryonal carcinoma differentiation-regulated protein|mammalian retrotransposon-derived protein 2|myelin expression factor 3-like protein 1|paternally expressed gene 10 protein|retrotransposon gag domain containing 3|retrotransposon gag domain-containing protein 3|retrotransposon-derived gag-like polyprotein|retrotransposon-derived protein PEG10|ty3/Gypsy-like protein 20121230 -9606 23090 ZNF423 - Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104 HGNC:16762|MIM:604557|Ensembl:ENSG00000102935|HPRD:05189|Vega:OTTHUMG00000173491 16 16q12 zinc finger protein 423 protein-coding ZNF423 zinc finger protein 423 O OLF-1/EBF associated zinc finger|Smad- and Olf-interacting zinc finger protein|early B-cell factor associated zinc finger protein|hOAZ|olf1/EBF-associated zinc finger protein 20121230 -9606 23091 ZC3H13 RP11-71J12.1 KIAA0853 HGNC:20368|Ensembl:ENSG00000123200|HPRD:08307|Vega:OTTHUMG00000016863 13 13q14.13 zinc finger CCCH-type containing 13 protein-coding ZC3H13 zinc finger CCCH-type containing 13 O zinc finger CCCH domain-containing protein 13 20121230 -9606 23092 ARHGAP26 - GRAF|GRAF1|OPHN1L|OPHN1L1 HGNC:17073|MIM:605370|Ensembl:ENSG00000145819|HPRD:05643|Vega:OTTHUMG00000059705 5 5q31 Rho GTPase activating protein 26 protein-coding ARHGAP26 Rho GTPase activating protein 26 O GTPase regulator associated with focal adhesion kinase pp125(FAK)|oligophrenin-1-like protein|rho GTPase-activating protein 26 20121230 -9606 23093 TTLL5 - KIAA0998|STAMP HGNC:19963|MIM:612268|Ensembl:ENSG00000119685|HPRD:08309|Vega:OTTHUMG00000171611 14 14q24.3 tubulin tyrosine ligase-like family, member 5 protein-coding TTLL5 tubulin tyrosine ligase-like family, member 5 O SRC1 and TIF2 associated binding protein|SRC1 and TIF2-associated modulatory protein|tubulin polyglutamylase TTLL5 20121230 -9606 23094 SIPA1L3 - SPAL3 HGNC:23801|Ensembl:ENSG00000105738|HPRD:18755|Vega:OTTHUMG00000073727 19 19q13.13 signal-induced proliferation-associated 1 like 3 protein-coding SIPA1L3 signal-induced proliferation-associated 1 like 3 O SIPA1-like protein 3|SPA-1-like 3|SPA-1-like protein 3|signal-induced proliferation-associated 1-like protein 3 20121230 -9606 23095 KIF1B RP4-736L20.1 CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 HGNC:16636|MIM:605995|Ensembl:ENSG00000054523|HPRD:05818|Vega:OTTHUMG00000001817 1 1p36.2 kinesin family member 1B protein-coding KIF1B kinesin family member 1B O kinesin superfamily protein KIF1B|kinesin-like protein KIF1B 20121230 -9606 23096 IQSEC2 RP11-258C19.1 BRAG1|MRX1 HGNC:29059|MIM:300522|Ensembl:ENSG00000124313|HPRD:10012|Vega:OTTHUMG00000021608 X Xp11.22 IQ motif and Sec7 domain 2 protein-coding IQSEC2 IQ motif and Sec7 domain 2 O IQ motif and SEC7 domain-containing protein 2|brefeldin A resistant Arf-guanine nucleotide exchange factor 1|brefeldin A resistant Arf-guanine nucleotide exchange factor 1b|brefeldin A resistant Arf-guanine nucleotide exchange factor 1c 20121230 -9606 23097 CDK19 RP11-346C16.5 CDC2L6|CDK11|bA346C16.3 HGNC:19338|MIM:614720|Ensembl:ENSG00000155111|HPRD:07627|Vega:OTTHUMG00000015365 6 6q21 cyclin-dependent kinase 19 protein-coding CDK19 cyclin-dependent kinase 19 O CDC2-related protein kinase 6|CDK8-like cyclin-dependent kinase|cell division cycle 2-like 6 (CDK8-like)|cell division cycle 2-like protein kinase 6|cell division protein kinase 19|cyclin dependent kinase 19 variant 2|cyclin-dependent kinase (CDC2-like) 11|cyclin-dependent kinase 11|death-preventing kinase 20121230 -9606 23098 SARM1 - SAMD2|SARM HGNC:17074|MIM:607732|Ensembl:ENSG00000004139|Vega:OTTHUMG00000132499 17 17q11 sterile alpha and TIR motif containing 1 protein-coding SARM1 sterile alpha and TIR motif containing 1 O SAM domain-containing protein 2|sterile alpha and Armadillo repeat protein|sterile alpha and HEAT/Armadillo motif protein, ortholog of Drosophila|sterile alpha and TIR motif-containing protein 1|sterile alpha motif domain-containing protein 2|tir-1 homolog 20121230 -9606 23099 ZBTB43 RP11-489N22.2 ZBTB22B|ZNF-X|ZNF297B HGNC:17908|Ensembl:ENSG00000169155|HPRD:08346|Vega:OTTHUMG00000020693 9 9q33.3 zinc finger and BTB domain containing 43 protein-coding ZBTB43 zinc finger and BTB domain containing 43 O zinc finger and BTB domain-containing protein 22B|zinc finger and BTB domain-containing protein 43|zinc finger protein 297B 20121230 -9606 23101 MCF2L2 - ARHGEF22 HGNC:30319|Ensembl:ENSG00000053524|HPRD:08308|Vega:OTTHUMG00000158388 3 3q27.1 MCF.2 cell line derived transforming sequence-like 2 protein-coding MCF2L2 MCF.2 cell line derived transforming sequence-like 2 O MCF2-transforming sequence-like protein 2|dbs-related Rho family guanine nucleotide exchange factor|probable guanine nucleotide exchange factor MCF2L2 20121230 -9606 23102 TBC1D2B - - HGNC:29183|Ensembl:ENSG00000167202|HPRD:08310|Vega:OTTHUMG00000152885 15 15q24.3-q25.1 TBC1 domain family, member 2B protein-coding TBC1D2B TBC1 domain family, member 2B O TBC1 domain family member 2B 20121230 -9606 23105 FSTL4 - - HGNC:21389|Ensembl:ENSG00000053108|HPRD:17022|Vega:OTTHUMG00000162729 5 5q31.1 follistatin-like 4 protein-coding FSTL4 follistatin-like 4 O follistatin-like protein 4|follistatin-related protein 4 20121230 -9606 23107 MRPS27 - MRP-S27|S27mt HGNC:14512|MIM:611989|Ensembl:ENSG00000113048|HPRD:17596|Vega:OTTHUMG00000100951 5 5q13.2 mitochondrial ribosomal protein S27 protein-coding MRPS27 mitochondrial ribosomal protein S27 O 28S ribosomal protein S27, mitochondrial|mitochondrial 28S ribosomal protein S27 20121230 -9606 23108 RAP1GAP2 - GARNL4|RAP1GA3 HGNC:29176|Ensembl:ENSG00000132359|HPRD:17028|Vega:OTTHUMG00000177642 17 17p13.3 RAP1 GTPase activating protein 2 protein-coding RAP1GAP2 RAP1 GTPase activating protein 2 O GTPase activating RANGAP domain-like 4|GTPase activating Rap/RanGAP domain-like 4|GTPase-activating Rap/Ran-GAP domain-like protein 4|rap1 GTPase-activating protein 2 20121230 -9606 23109 DDN - - HGNC:24458|MIM:610588|Ensembl:ENSG00000181418|HPRD:10294|Vega:OTTHUMG00000156183 12 12q13.12 dendrin protein-coding DDN dendrin O - 20121230 -9606 23111 SPG20 - SPARTIN|TAHCCP1 HGNC:18514|MIM:607111|Ensembl:ENSG00000133104|HPRD:06170|Vega:OTTHUMG00000016730 13 13q13.3 spastic paraplegia 20 (Troyer syndrome) protein-coding SPG20 spastic paraplegia 20 (Troyer syndrome) O spartin|trans-activated by hepatitis C virus core protein 1 20121230 -9606 23112 TNRC6B RP5-1042K10.7 - HGNC:29190|MIM:610740|Ensembl:ENSG00000100354|Vega:OTTHUMG00000151114 22 22q13.1 trinucleotide repeat containing 6B protein-coding TNRC6B trinucleotide repeat containing 6B O trinucleotide repeat-containing gene 6B protein 20121230 -9606 23113 CUL9 - H7AP1|PARC|RP3-330M21.2 HGNC:15982|MIM:607489|Ensembl:ENSG00000112659|HPRD:06317|Vega:OTTHUMG00000014723 6 6p21.1 cullin 9 protein-coding CUL9 cullin 9 O CUL-9|UbcH7-associated protein 1|cullin-9|p53-associated parkin-like cytoplasmic protein|parkin-like cytoplasmic p53 binding protein 20121230 -9606 23114 NFASC RP11-494K3.1 NF|NRCAML HGNC:29866|MIM:609145|Ensembl:ENSG00000163531|HPRD:12372|Vega:OTTHUMG00000151697 1 1q32.1 neurofascin protein-coding NFASC neurofascin O neurofascin homolog 20121230 -9606 23116 FAM179B - KIAA0423 HGNC:19959|Ensembl:ENSG00000198718|HPRD:11082|Vega:OTTHUMG00000140264 14 14q21.2 family with sequence similarity 179, member B protein-coding FAM179B family with sequence similarity 179, member B O protein FAM179B 20121230 -9606 23117 NPIPL3 - KIAA0220L HGNC:28989|Ensembl:ENSG00000169246|Vega:OTTHUMG00000163506 16 16p12.2 nuclear pore complex interacting protein-like 3 protein-coding NPIPL3 nuclear pore complex interacting protein-like 3 O KIAA0220-like protein|PI-3-kinase-related kinase SMG-1 isoform 1 homolog|nuclear pore complex-interacting protein-like 3|protein pps22-1 20121230 -9606 23118 TAB2 - CHTD2|MAP3K7IP2 HGNC:17075|MIM:605101|Ensembl:ENSG00000055208|HPRD:05483|Vega:OTTHUMG00000015783 6 6q25.1 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 O TAB-2|TAK1-binding protein 2|TGF-beta-activated kinase 1 and MAP3K7-binding protein 2|TGF-beta-activated kinase 1-binding protein 2|mitogen-activated protein kinase kinase kinase 7-interacting protein 2 20121230 -9606 23119 HIC2 - HRG22|ZBTB30|ZNF907 HGNC:18595|MIM:607712|Ensembl:ENSG00000169635|HPRD:07412|Vega:OTTHUMG00000150781 22 22q11.21 hypermethylated in cancer 2 protein-coding HIC2 hypermethylated in cancer 2 O HIC1-related gene on chromosome 22 protein|hic-2|hic-3|hypermethylated in cancer 2 protein|zinc finger and BTB domain-containing protein 30 20121230 -9606 23120 ATP10B - ATPVB HGNC:13543|Ensembl:ENSG00000118322|HPRD:08637|Vega:OTTHUMG00000163551 5 5q34 ATPase, class V, type 10B protein-coding ATP10B ATPase, class V, type 10B O probable phospholipid-transporting ATPase VB 20121230 -9606 23122 CLASP2 - - HGNC:17078|MIM:605853|Ensembl:ENSG00000163539|HPRD:12054|Vega:OTTHUMG00000156489 3 3p22.3 cytoplasmic linker associated protein 2 protein-coding CLASP2 cytoplasmic linker associated protein 2 O CLIP-associating protein 2|cytoplasmic linker-associated protein 2|multiple asters (Mast)-like homolog 2|protein Orbit homolog 2 20121230 -9606 23125 CAMTA2 - - HGNC:18807|MIM:611508|Ensembl:ENSG00000108509|HPRD:13002|Vega:OTTHUMG00000099417 17 17p13.2 calmodulin binding transcription activator 2 protein-coding CAMTA2 calmodulin binding transcription activator 2 O calmodulin-binding transcription activator 2 20121230 -9606 23126 POGZ RP11-806J18.2 SUHW5|ZNF280E|ZNF635|ZNF635m HGNC:18801|MIM:614787|Ensembl:ENSG00000143442|HPRD:11445|Vega:OTTHUMG00000012499 1 1q21.3 pogo transposable element with ZNF domain protein-coding POGZ pogo transposable element with ZNF domain O putative protein product of Nbla00003|suppressor of hairy wing homolog 5|zinc finger protein 280E|zinc finger protein 635 20121230 -9606 23127 GLT25D2 RP11-498P10.2 C1orf17 HGNC:16790|Ensembl:ENSG00000198756|HPRD:13583|Vega:OTTHUMG00000035460 1 1q25 glycosyltransferase 25 domain containing 2 protein-coding GLT25D2 glycosyltransferase 25 domain containing 2 O glycosyltransferase 25 family member 2|hydroxylysine galactosyltransferase 2|procollagen galactosyltransferase 2 20121230 -9606 23129 PLXND1 - PLEXD1 HGNC:9107|MIM:604282|Ensembl:ENSG00000004399|HPRD:05046|Vega:OTTHUMG00000159547 3 3q22.1 plexin D1 protein-coding PLXND1 plexin D1 O plexin-D1 20121230 -9606 23130 ATG2A - - HGNC:29028|Ensembl:ENSG00000110046|HPRD:17186|Vega:OTTHUMG00000066831 11 11q13.1 autophagy related 2A protein-coding ATG2A autophagy related 2A O ATG2 autophagy related 2 homolog A|autophagy-related protein 2 homolog A 20121230 -9606 23131 GPATCH8 - GPATC8|KIAA0553 HGNC:29066|MIM:614396|Ensembl:ENSG00000186566|HPRD:11089|Vega:OTTHUMG00000181818 17 17q21.31 G patch domain containing 8 protein-coding GPATCH8 G patch domain containing 8 O G patch domain-containing protein 8 20121230 -9606 23132 RAD54L2 - ARIP4|HSPC325|SRISNF2L HGNC:29123|Ensembl:ENSG00000164080|HPRD:10018|Vega:OTTHUMG00000152936 3 3p21.2 RAD54-like 2 (S. cerevisiae) protein-coding RAD54L2 RAD54-like 2 (S. cerevisiae) O RAD54-like protein 2|androgen receptor-interacting protein 4|helicase ARIP4 20121230 -9606 23133 PHF8 RP13-444K19.2 JHDM1F|MRXSSD|ZNF422 HGNC:20672|MIM:300560|Ensembl:ENSG00000172943|HPRD:06599|Vega:OTTHUMG00000021622 X Xp11.22 PHD finger protein 8 protein-coding PHF8 PHD finger protein 8 O histone lysine demethylase PHF8|jumonji C domain-containing histone demethylase 1F 20121230 -9606 23135 KDM6B - JMJD3 HGNC:29012|MIM:611577|Ensembl:ENSG00000132510|Vega:OTTHUMG00000178021 17 17p13.1 lysine (K)-specific demethylase 6B protein-coding KDM6B lysine (K)-specific demethylase 6B O jmjC domain-containing protein 3|jumonji domain containing 3, histone lysine demethylase|jumonji domain-containing protein 3|lysine demethylase 6B|lysine-specific demethylase 6B 20121230 -9606 23136 EPB41L3 - 4.1B|DAL-1|DAL1 HGNC:3380|MIM:605331|Ensembl:ENSG00000082397|HPRD:05622|Vega:OTTHUMG00000131562 18 18p11.32 erythrocyte membrane protein band 4.1-like 3 protein-coding EPB41L3 erythrocyte membrane protein band 4.1-like 3 O band 4.1-like protein 3|differentially expressed in adenocarcinoma of the lung protein 1 20121230 -9606 23137 SMC5 - SMC5L1 HGNC:20465|MIM:609386|Ensembl:ENSG00000198887|HPRD:10241|Vega:OTTHUMG00000019992 9 9q21.12 structural maintenance of chromosomes 5 protein-coding SMC5 structural maintenance of chromosomes 5 O SMC protein 5|SMC-5|SMC5 structural maintenance of chromosomes 5-like 1|hSMC5|structural maintenance of chromosomes protein 5 20121230 -9606 23138 N4BP3 - LZTS4 HGNC:29852|Ensembl:ENSG00000145911|Vega:OTTHUMG00000163456 5 5q35.3 NEDD4 binding protein 3 protein-coding N4BP3 NEDD4 binding protein 3 O NEDD4-binding protein 3 20121230 -9606 23139 MAST2 RP4-533D7.1 MAST205|MTSSK HGNC:19035|MIM:612257|Ensembl:ENSG00000086015|HPRD:11294|Vega:OTTHUMG00000008007 1 1p34.1 microtubule associated serine/threonine kinase 2 protein-coding MAST2 microtubule associated serine/threonine kinase 2 O microtubule associated testis specific serine/threonine protein kinase|microtubule-associated serine/threonine-protein kinase 2 20121230 -9606 23140 ZZEF1 - ZZZ4 HGNC:29027|Ensembl:ENSG00000074755|HPRD:15906|Vega:OTTHUMG00000090741 17 17p13.2 zinc finger, ZZ-type with EF-hand domain 1 protein-coding ZZEF1 zinc finger, ZZ-type with EF-hand domain 1 O zinc finger ZZ-type and EF-hand domain-containing protein 1|zinc finger, ZZ-type with EF hand domain 1 20121230 -9606 23141 ANKLE2 - KIAA0692|LEMD7|Lem4 HGNC:29101|Ensembl:ENSG00000176915|Vega:OTTHUMG00000168046 12 12q24.33 ankyrin repeat and LEM domain containing 2 protein-coding ANKLE2 ankyrin repeat and LEM domain containing 2 O LEM domain containing 7|LEM domain-containing protein 4|ankyrin repeat and LEM domain-containing protein 2 20121230 -9606 23142 DCUN1D4 - - HGNC:28998|MIM:612977|Ensembl:ENSG00000109184|HPRD:13791|Vega:OTTHUMG00000128700 4 4q12 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) protein-coding DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) O DCN1-like protein 4|DCUN1 domain-containing protein 4|defective in cullin neddylation protein 1-like protein 4 20121230 -9606 23143 LRCH1 RP11-147L20.3 CHDC1|NP81 HGNC:20309|MIM:610368|Ensembl:ENSG00000136141|HPRD:14307|Vega:OTTHUMG00000016877 13 13q14.11 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 O leucine-rich repeat and calponin homology domain-containing protein 1|neuronal protein 81 20121230 -9606 23144 ZC3H3 - ZC3HDC3 HGNC:28972|Ensembl:ENSG00000014164|HPRD:15697|Vega:OTTHUMG00000165127 8 8q24.3 zinc finger CCCH-type containing 3 protein-coding ZC3H3 zinc finger CCCH-type containing 3 O zinc finger CCCH domain-containing protein 3|zinc finger CCCH type domain containing 3|zinc finger CCCH-type domain containing 3 20121230 -9606 23145 SSPO - SCO-spondin HGNC:21998 7 7q36.1 SCO-spondin homolog (Bos taurus) protein-coding SSPO SCO-spondin homolog (Bos taurus) O SCO-spondin 20121230 -9606 23148 NACAD - - HGNC:22196|Ensembl:ENSG00000136274|Vega:OTTHUMG00000159170 7 7p13 NAC alpha domain containing protein-coding NACAD NAC alpha domain containing O NAC-alpha domain-containing protein 1 20121230 -9606 23149 FCHO1 - - HGNC:29002|MIM:613437|Ensembl:ENSG00000130475|HPRD:16887 19 19p13.11 FCH domain only 1 protein-coding FCHO1 FCH domain only 1 O FCH domain only protein 1 20121230 -9606 23150 FRMD4B - 6030440G05Rik|GRSP1 HGNC:24886|Ensembl:ENSG00000114541|Vega:OTTHUMG00000158772 3 3p14.1 FERM domain containing 4B protein-coding FRMD4B FERM domain containing 4B O FERM domain-containing protein 4B|GRP1-binding protein GRSP1 20121230 -9606 23151 GRAMD4 RP6-59H18.4 DIP|dA59H18.1|dJ439F8.1 HGNC:29113|MIM:613691|Ensembl:ENSG00000075240|HPRD:11107|Vega:OTTHUMG00000150402 22 22q13.31 GRAM domain containing 4 protein-coding GRAMD4 GRAM domain containing 4 O GRAM domain-containing protein 4|death-inducing protein|death-inducing-protein 20121230 -9606 23152 CIC - - HGNC:14214|MIM:612082|Ensembl:ENSG00000079432|HPRD:10831|Vega:OTTHUMG00000177694 19 19q13.2 capicua homolog (Drosophila) protein-coding CIC capicua homolog (Drosophila) O protein capicua homolog 20121230 -9606 23154 NCDN - - HGNC:17597|MIM:608458|Ensembl:ENSG00000020129|HPRD:10530|Vega:OTTHUMG00000059204 1 1p34.3 neurochondrin protein-coding NCDN neurochondrin O - 20121230 -9606 23155 CLCC1 RP11-475E11.6 MCLC HGNC:29675|Ensembl:ENSG00000121940|HPRD:17471|Vega:OTTHUMG00000011732 1 1p13.3 chloride channel CLIC-like 1 protein-coding CLCC1 chloride channel CLIC-like 1 O Mid-1-related chloride channel 1|Mid1-related chloride channel|chloride channel CLIC-like protein 1|mid-1-related chloride channel protein 1 20121230 -9606 23157 SEPT6 RP5-876A24.2 SEP2|SEPT2 HGNC:15848|MIM:300683|Ensembl:ENSG00000125354|HPRD:06716|Vega:OTTHUMG00000022280 X Xq24 septin 6 protein-coding SEPT6 septin 6 O septin 2|septin-6 20121230 -9606 23158 TBC1D9 - MDR1 HGNC:21710|Ensembl:ENSG00000109436|HPRD:11115|Vega:OTTHUMG00000161405 4 4q31.21 TBC1 domain family, member 9 (with GRAM domain) protein-coding TBC1D9 TBC1 domain family, member 9 (with GRAM domain) O TBC1 domain family member 9|TBC1 domain family member 9A 20121230 -9606 23160 WDR43 - NET12|UTP5 HGNC:28945|Ensembl:ENSG00000163811|Vega:OTTHUMG00000152015 2 2p23.2 WD repeat domain 43 protein-coding WDR43 WD repeat domain 43 O UTP5, small subunit (SSU) processome component, homolog|WD repeat-containing protein 43 20121230 -9606 23161 SNX13 - RGS-PX1 HGNC:21335|MIM:606589|Ensembl:ENSG00000071189|HPRD:09418|Vega:OTTHUMG00000152730 7 7p21.1 sorting nexin 13 protein-coding SNX13 sorting nexin 13 O rgs domain- and phox domain-containing protein|sorting nexin-13 20121230 -9606 23162 MAPK8IP3 AC012180.8 JIP3|JSAP1|SYD2|syd HGNC:6884|MIM:605431|Ensembl:ENSG00000138834|HPRD:12014|Vega:OTTHUMG00000128637 16 16p13.3 mitogen-activated protein kinase 8 interacting protein 3 protein-coding MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 O C-Jun-amino-terminal kinase-interacting protein 3|C-jun-amino-terminal kinase interacting protein 3|JIP-3|JNK MAP kinase scaffold protein 3|JNK-interacting protein 3|JNK/SAPK-associated protein-1|JNK/stress-activated protein kinase-associated protein 1|homolog of Drosophila Sunday driver 2|mitogen-activated protein kinase 8-interacting protein 3 20121230 -9606 23163 GGA3 - - HGNC:17079|MIM:606006|Ensembl:ENSG00000125447|HPRD:10443|Vega:OTTHUMG00000179483 17 17q25.1 golgi-associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding GGA3 golgi-associated, gamma adaptin ear containing, ARF binding protein 3 O ADP-ribosylation factor-binding protein GGA3|Golgi-localized, gamma ear-containing, ARF-binding protein 3|golgi associated, gamma adaptin ear containing, ARF binding protein 3 20121230 -9606 23164 MPRIP - M-RIP|MRIP|RHOIP3|RIP3|p116Rip HGNC:30321|MIM:612935|Ensembl:ENSG00000133030|HPRD:17591|Vega:OTTHUMG00000059276 17 17p11.2 myosin phosphatase Rho interacting protein protein-coding MPRIP myosin phosphatase Rho interacting protein O Rho interacting protein 3|myosin phosphatase Rho-interacting protein 20121230 -9606 23165 NUP205 - C7orf14 HGNC:18658|MIM:614352|Ensembl:ENSG00000155561|HPRD:17653|Vega:OTTHUMG00000155497 7 7q33 nucleoporin 205kDa protein-coding NUP205 nucleoporin 205kDa O 205 kDa nucleoporin|nuclear pore complex protein Nup205|nucleoporin Nup205 20121230 -9606 23166 STAB1 - CLEVER-1|FEEL-1|FELE-1|FEX1|STAB-1 HGNC:18628|MIM:608560|Ensembl:ENSG00000010327|HPRD:09778|Vega:OTTHUMG00000158574 3 3p21.1 stabilin 1 protein-coding STAB1 stabilin 1 O MS-1 antigen|common lymphatic endothelial and vascular endothelial receptor-1|fasciclin egf-like, laminin-type egf-like, and link domain-containing scavenger receptor-1|fasciclin, EGF-like, laminin-type EGF-like and link domain-containing scavenger receptor 1|stabilin-1 20121230 -9606 23167 EFR3A - - HGNC:28970|MIM:611798|Ensembl:ENSG00000132294|HPRD:17179|Vega:OTTHUMG00000150552 8 8q24.22 EFR3 homolog A (S. cerevisiae) protein-coding EFR3A EFR3 homolog A (S. cerevisiae) O protein EFR3 homolog A 20121230 -9606 23168 RTF1 - GTL7|KIAA0252 HGNC:28996|MIM:611633|Ensembl:ENSG00000137815|HPRD:11071|Vega:OTTHUMG00000133744 15 15q15.1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein-coding RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) O RNA polymerase-associated protein RTF1 homolog|ortholog of mouse gene trap locus 7 20121230 -9606 23169 SLC35D1 - UGTREL7 HGNC:20800|MIM:610804|Ensembl:ENSG00000116704|HPRD:15372|Vega:OTTHUMG00000009360 1 1p32-p31 solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 protein-coding SLC35D1 solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 O UDP-GlcA/UDP-GalNAc transporter|UDP-galactose transporter-related 7|UDP-galactose transporter-related protein 7|UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter|solute carrier family 35 member D1 20121230 -9606 23170 TTLL12 - dJ526I14.2 HGNC:28974|Ensembl:ENSG00000100304|HPRD:13782|Vega:OTTHUMG00000150682 22 22q13.31 tubulin tyrosine ligase-like family, member 12 protein-coding TTLL12 tubulin tyrosine ligase-like family, member 12 O tubulin--tyrosine ligase-like protein 12 20121230 -9606 23171 GPD1L - GPD1-L HGNC:28956|MIM:611778|Ensembl:ENSG00000152642|HPRD:10008|Vega:OTTHUMG00000155846 3 3p22.3 glycerol-3-phosphate dehydrogenase 1-like protein-coding GPD1L glycerol-3-phosphate dehydrogenase 1-like O glycerol-3-phosphate dehydrogenase 1-like protein 20121230 -9606 23172 FAM175B - ABRO1|KIAA0157 HGNC:28975|MIM:611144|Ensembl:ENSG00000165660|HPRD:13783|Vega:OTTHUMG00000019218 10 10q26.13 family with sequence similarity 175, member B protein-coding FAM175B family with sequence similarity 175, member B O BRISC complex subunit Abro1|abraxas brother 1|abraxas brother protein 1 20121230 -9606 23173 METAP1 - MAP1A|MetAP1A HGNC:15789|MIM:610151|Ensembl:ENSG00000164024|HPRD:10071|Vega:OTTHUMG00000161231 4 4q23 methionyl aminopeptidase 1 protein-coding METAP1 methionyl aminopeptidase 1 O MAP 1|metAP 1|methionine aminopeptidase 1|peptidase M 1 20121230 -9606 23174 ZCCHC14 - BDG-29|BDG29 HGNC:24134|Ensembl:ENSG00000140948|HPRD:18316|Vega:OTTHUMG00000137655 16 16q24.2 zinc finger, CCHC domain containing 14 protein-coding ZCCHC14 zinc finger, CCHC domain containing 14 O zinc finger CCHC domain-containing protein 14 20121230 -9606 23175 LPIN1 - PAP1 HGNC:13345|MIM:605518|Ensembl:ENSG00000134324|HPRD:09271|Vega:OTTHUMG00000119082 2 2p25.1 lipin 1 protein-coding LPIN1 lipin 1 O lipin-1|phosphatidate phosphatase LPIN1 20121230 -9606 23176 SEPT8 - SEP2 HGNC:16511|MIM:608418|Ensembl:ENSG00000164402|Vega:OTTHUMG00000059735 5 5q31 septin 8 protein-coding SEPT8 septin 8 O septin-8 20121230 -9606 23177 CEP68 - KIAA0582 HGNC:29076|Ensembl:ENSG00000011523|HPRD:13808|Vega:OTTHUMG00000129538 2 2p14 centrosomal protein 68kDa protein-coding CEP68 centrosomal protein 68kDa O centrosomal protein of 68 kDa 20121230 -9606 23178 PASK - PASKIN|STK37 HGNC:17270|MIM:607505|Ensembl:ENSG00000115687|HPRD:06328|Vega:OTTHUMG00000133392 2 2q37.3 PAS domain containing serine/threonine kinase protein-coding PASK PAS domain containing serine/threonine kinase O PAS domain-containing serine/threonine-protein kinase|per-arnt-sim (PAS) domain kinase 20121230 -9606 23179 RGL1 RP11-498P10.1 RGL HGNC:30281|MIM:605667|Ensembl:ENSG00000143344|HPRD:12032|Vega:OTTHUMG00000035328 1 1q25.3 ral guanine nucleotide dissociation stimulator-like 1 protein-coding RGL1 ral guanine nucleotide dissociation stimulator-like 1 O ralGDS-like 1 20121230 -9606 23180 RFTN1 MIG2 PIB10|PIG9|RAFTLIN HGNC:30278|Ensembl:ENSG00000131378|HPRD:17950|Vega:OTTHUMG00000156973 3 3p24.3 raftlin, lipid raft linker 1 protein-coding RFTN1 raftlin, lipid raft linker 1 O cell migration-inducing gene 2 protein|proliferation-inducing protein 10|proliferation-inducing protein 9|raft-linking protein|raftlin 20121230 -9606 23181 DIP2A - C21orf106|DIP2 HGNC:17217|MIM:607711|Ensembl:ENSG00000160305|HPRD:07611|Vega:OTTHUMG00000090717 21 21q22.3 DIP2 disco-interacting protein 2 homolog A (Drosophila) protein-coding DIP2A DIP2 disco-interacting protein 2 homolog A (Drosophila) O DIP2 homolog A|disco-interacting protein 2 homolog A|disco-interacting protein 2A 20121230 -9606 23184 MESDC2 UNQ1911/PRO4369 BOCA|MESD HGNC:13520|MIM:607783|Ensembl:ENSG00000117899|HPRD:12129|Vega:OTTHUMG00000172288 15 15q13 mesoderm development candidate 2 protein-coding MESDC2 mesoderm development candidate 2 O LDLR chaperone MESD|mesoderm development protein|renal carcinoma antigen NY-REN-61 20121230 -9606 23185 LARP4B RP11-164C1.3 KIAA0217|LARP5 HGNC:28987|HPRD:13787 10 10p15.3 La ribonucleoprotein domain family, member 4B protein-coding LARP4B La ribonucleoprotein domain family, member 4B O La ribonucleoprotein domain family, member 5|la-related protein 4B|la-related protein 5 20121230 -9606 23186 RCOR1 - COREST|RCOR HGNC:17441|MIM:607675|Ensembl:ENSG00000089902|HPRD:09645|Vega:OTTHUMG00000171778 14 14q32.31 REST corepressor 1 protein-coding RCOR1 REST corepressor 1 O - 20121230 -9606 23187 PHLDB1 DLNB07 LL5A HGNC:23697|MIM:612834|Ensembl:ENSG00000019144|HPRD:15128|Vega:OTTHUMG00000166341 11 11q23.3 pleckstrin homology-like domain, family B, member 1 protein-coding PHLDB1 pleckstrin homology-like domain, family B, member 1 O LL5alpha|pleckstrin homology-like domain family B member 1|protein LL5-alpha 20121230 -9606 23189 KANK1 RP11-130C19.4 ANKRD15|CPSQ2|KANK HGNC:19309|MIM:607704|Ensembl:ENSG00000107104|HPRD:09651|Vega:OTTHUMG00000019434 9 9p24.3 KN motif and ankyrin repeat domains 1 protein-coding KANK1 KN motif and ankyrin repeat domains 1 O KN motif and ankyrin repeat domain-containing protein 1|ankyrin repeat domain-containing protein 15|kidney ankyrin repeat-containing protein 20121230 -9606 23190 UBXN4 - UBXD2|UBXDC1|erasin HGNC:14860|MIM:611216|Ensembl:ENSG00000144224|HPRD:18254|Vega:OTTHUMG00000153577 2 2q21.3 UBX domain protein 4 protein-coding UBXN4 UBX domain protein 4 O UBX domain containing 2|UBX domain-containing 1|UBX domain-containing protein 2|UBX domain-containing protein 4 20121230 -9606 23191 CYFIP1 - P140SRA-1|SHYC|SRA1 HGNC:13759|MIM:606322|Ensembl:ENSG00000068793|HPRD:05890|Vega:OTTHUMG00000129100 15 15q11 cytoplasmic FMR1 interacting protein 1 protein-coding CYFIP1 cytoplasmic FMR1 interacting protein 1 O cytoplasmic FMR1-interacting protein 1|cytoplasmic FMRP interacting protein 1|selective hybridizing clone|specifically Rac1-associated protein 1|sra-1 20121230 -9606 23192 ATG4B - APG4B|AUTL1 HGNC:20790|MIM:611338|Ensembl:ENSG00000168397|HPRD:16499|Vega:OTTHUMG00000151514 2 2q37.3 autophagy related 4B, cysteine peptidase protein-coding ATG4B autophagy related 4B, cysteine peptidase O APG4 autophagy 4 homolog B|ATG4 autophagy related 4 homolog B|AUT-like 1 cysteine endopeptidase|autophagin-1|autophagy-related cysteine endopeptidase 1|autophagy-related protein 4 homolog B|cysteine protease ATG4B|hAPG4B 20121230 -9606 23193 GANAB - G2AN|GLUII HGNC:4138|MIM:104160|Ensembl:ENSG00000089597|HPRD:03516|Vega:OTTHUMG00000167696 11 11q12.3 glucosidase, alpha; neutral AB protein-coding GANAB glucosidase, alpha; neutral AB O alpha glucosidase II alpha subunit|alpha-glucosidase 2|glucosidase II subunit alpha|neutral alpha-glucosidase AB 20121230 -9606 23194 FBXL7 - FBL6|FBL7 HGNC:13604|MIM:605656|Ensembl:ENSG00000183580|HPRD:05740|Vega:OTTHUMG00000161798 5 5p15.1 F-box and leucine-rich repeat protein 7 protein-coding FBXL7 F-box and leucine-rich repeat protein 7 O F-box protein FBL6/FBL7|F-box protein Fbl7|F-box/LRR-repeat protein 7 20121230 -9606 23195 MDN1 RP1-122O8.1 - HGNC:18302|Ensembl:ENSG00000112159|HPRD:10069|Vega:OTTHUMG00000015213 6 6q15 MDN1, midasin homolog (yeast) protein-coding MDN1 MDN1, midasin homolog (yeast) O MIDAS-containing protein|midasin 20121230 -9606 23196 FAM120A - C9orf10|DNAPTP1|DNAPTP5|OSSA HGNC:13247|MIM:612265|Ensembl:ENSG00000048828|HPRD:12928|Vega:OTTHUMG00000020252 9 9q22.31 family with sequence similarity 120A protein-coding FAM120A family with sequence similarity 120A O DNA polymerase-transactivated protein 1|DNA polymerase-transactivated protein 5|constitutive coactivator of PPAR-gamma-like protein 1|oxidative stress-associated Src activator 20121230 -9606 23197 FAF2 - ETEA|UBXD8|UBXN3B HGNC:24666|Ensembl:ENSG00000113194|HPRD:16870|Vega:OTTHUMG00000163228 5 5q35.2 Fas associated factor family member 2 protein-coding FAF2 Fas associated factor family member 2 O FAS-associated factor 2|UBX domain containing 8|UBX domain protein 3B|UBX domain-containing protein 3B|UBX domain-containing protein 8|expressed in T-cells and eosinophils in atopic dermatitis 20121230 -9606 23198 PSME4 - PA200 HGNC:20635|MIM:607705|Ensembl:ENSG00000068878|HPRD:09652|Vega:OTTHUMG00000151852 2 2p16.2 proteasome (prosome, macropain) activator subunit 4 protein-coding PSME4 proteasome (prosome, macropain) activator subunit 4 O proteasome activator 200 kDa|proteasome activator PA200|proteasome activator complex subunit 4 20121230 -9606 23199 GSE1 - KIAA0182 HGNC:28979|Ensembl:ENSG00000131149|HPRD:11066|Vega:OTTHUMG00000137650 16 16q24.1 Gse1 coiled-coil protein protein-coding GSE1 Gse1 coiled-coil protein O Gse1 coiled-coil protein homolog|genetic suppressor element 1 20121230 -9606 23200 ATP11B - ATPIF|ATPIR HGNC:13553|MIM:605869|Ensembl:ENSG00000058063|HPRD:10432|Vega:OTTHUMG00000158295 3 3q27 ATPase, class VI, type 11B protein-coding ATP11B ATPase, class VI, type 11B O ATPase IR|probable phospholipid-transporting ATPase IF 20121230 -9606 23201 FAM168A - KIAA0280|TCRP1 HGNC:28999|Ensembl:ENSG00000054965|Vega:OTTHUMG00000167995 11 11q13.4 family with sequence similarity 168, member A protein-coding FAM168A family with sequence similarity 168, member A O protein FAM168A|tongue cancer chemotherapy resistance-associated protein 1 20121230 -9606 23203 PMPCA RP11-413M3.1 Alpha-MPP|INPP5E HGNC:18667|MIM:613036|Ensembl:ENSG00000165688|HPRD:07500|Vega:OTTHUMG00000020926 9 9q34.3 peptidase (mitochondrial processing) alpha protein-coding PMPCA peptidase (mitochondrial processing) alpha O P-55|inositol polyphosphate-5-phosphatase, 72 kD|mitochondrial matrix processing protease, alpha subunit|mitochondrial-processing peptidase subunit alpha 20121230 -9606 23204 ARL6IP1 - AIP1|ARL6IP|ARMER HGNC:697|MIM:607669|Ensembl:ENSG00000170540|Ensembl:ENSG00000260342|HPRD:09641|Vega:OTTHUMG00000131367|Vega:OTTHUMG00000177194 16 16p12-p11.2 ADP-ribosylation factor-like 6 interacting protein 1 protein-coding ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 O ADP-ribosylation factor-like protein 6-interacting protein 1|ARL-6-interacting protein 1|aip-1|apoptotic regulator in the membrane of the endoplasmic reticulum 20121230 -9606 23205 ACSBG1 - BG|BG1|BGM|GR-LACS|LPD HGNC:29567|MIM:614362|Ensembl:ENSG00000103740|HPRD:16549|Vega:OTTHUMG00000143734 15 15q23-q24 acyl-CoA synthetase bubblegum family member 1 protein-coding ACSBG1 acyl-CoA synthetase bubblegum family member 1 O bubblegum|lipidosin|long-chain-fatty-acid--CoA ligase ACSBG1|very long-chain acyl-CoA synthetase 20121230 -9606 23207 PLEKHM2 - RP11-169K16.1|SKIP HGNC:29131|MIM:609613|Ensembl:ENSG00000116786|Vega:OTTHUMG00000003062 1 1p36.21 pleckstrin homology domain containing, family M (with RUN domain) member 2 protein-coding PLEKHM2 pleckstrin homology domain containing, family M (with RUN domain) member 2 O PH domain-containing family M member 2|SifA (Salmonella-induced filaments A) and kinesin-interacting protein|novel RUN and PH domain-containing protein|pleckstrin homology domain-containing family M member 2|salmonella-induced filaments A and kinesin-interacting protein|sifA and kinesin-interacting protein 20121230 -9606 23208 SYT11 - SYT12|sytXI HGNC:19239|MIM:608741|Ensembl:ENSG00000132718|HPRD:12289|Vega:OTTHUMG00000014105 1 1q21.2 synaptotagmin XI protein-coding SYT11 synaptotagmin XI O synaptotagmin 12|synaptotagmin-11 20121230 -9606 23209 MLC1 RP3-355C18.4 LVM|MLC|VL HGNC:17082|MIM:605908|Ensembl:ENSG00000100427|HPRD:05800|Vega:OTTHUMG00000150236 22 22q13.33 megalencephalic leukoencephalopathy with subcortical cysts 1 protein-coding MLC1 megalencephalic leukoencephalopathy with subcortical cysts 1 O membrane protein MLC1 20121230 -9606 23210 JMJD6 - PSR|PTDSR|PTDSR1 HGNC:19355|MIM:604914|Ensembl:ENSG00000070495|HPRD:05371|Vega:OTTHUMG00000169267 17 17q25 jumonji domain containing 6 protein-coding JMJD6 jumonji domain containing 6 O bifunctional arginine demethylase and lysyl-hydroxylase JMJD6|histone arginine demethylase JMJD6|jmjC domain-containing protein 6|jumonji domain-containing protein 6|lysyl-hydroxylase JMJD6|peptide-lysine 5-dioxygenase JMJD6|phosphatidylserine receptor 20121230 -9606 23211 ZC3H4 - C19orf7 HGNC:17808|Ensembl:ENSG00000130749 19 19q13.32 zinc finger CCCH-type containing 4 protein-coding ZC3H4 zinc finger CCCH-type containing 4 O zinc finger CCCH domain-containing protein 4 20121230 -9606 23212 RRS1 - - HGNC:17083|Ensembl:ENSG00000179041|HPRD:15277|Vega:OTTHUMG00000164765 8 8q13.1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) protein-coding RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) O homolog of yeast ribosome biogenesis regulator|homolog of yeast ribosome biogenesis regulatory protein RRS1|ribosome biogenesis regulatory protein RRS1 homolog|ribosome biogenesis regulatory protein homolog 20121230 -9606 23213 SULF1 - HSULF-1|SULF-1 HGNC:20391|MIM:610012|Ensembl:ENSG00000137573|HPRD:15450|Vega:OTTHUMG00000164466 8 8q13.1 sulfatase 1 protein-coding SULF1 sulfatase 1 O extracellular sulfatase Sulf-1|sulfatase FP 20121230 -9606 23214 XPO6 - EXP6|RANBP20 HGNC:19733|MIM:608411|Ensembl:ENSG00000169180|HPRD:10525|Vega:OTTHUMG00000176782 16 16p11.2 exportin 6 protein-coding XPO6 exportin 6 O exportin-6|ran-binding protein 20 20121230 -9606 23215 PRRC2C - BAT2-iso|BAT2D1|BAT2L2|XTP2 HGNC:24903|Ensembl:ENSG00000117523|HPRD:16539|Vega:OTTHUMG00000034665 1 1q23.3 proline-rich coiled-coil 2C protein-coding PRRC2C proline-rich coiled-coil 2C O BAT2 domain containing 1|BAT2 domain-containing protein 1|HBV X-transactivated gene 2 protein|HBV XAg-transactivated protein 2|HBxAg transactivated protein 2|HLA-B associated transcript 2-like 2|HLA-B-associated transcript 2-like 2|proline-rich and coiled-coil-containing protein 2C|protein BAT2-like 2|protein PRRC2C 20121230 -9606 23216 TBC1D1 - TBC|TBC1 HGNC:11578|MIM:609850|Ensembl:ENSG00000065882|HPRD:18161|Vega:OTTHUMG00000150302 4 4p14 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 protein-coding TBC1D1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 O TBC1 domain family member 1 20121230 -9606 23217 ZFR2 - KIAA1086 HGNC:29189|Ensembl:ENSG00000105278|Vega:OTTHUMG00000180918 19 19p13.3 zinc finger RNA binding protein 2 protein-coding ZFR2 zinc finger RNA binding protein 2 O zinc finger RNA-binding protein 2 20121230 -9606 23218 NBEAL2 UNQ253/PRO290 BDPLT4|GPS HGNC:31928|MIM:614169|Ensembl:ENSG00000160796|Vega:OTTHUMG00000156497 3 3p21.31 neurobeachin-like 2 protein-coding NBEAL2 neurobeachin-like 2 O neurobeachin-like protein 2 20121230 -9606 23219 FBXO28 - CENP-30|Fbx28 HGNC:29046|MIM:609100|Ensembl:ENSG00000143756|HPRD:12367|Vega:OTTHUMG00000037495 1 1q42.11 F-box protein 28 protein-coding FBXO28 F-box protein 28 O F-box only protein 28|centromere protein 30 20121230 -9606 23220 DTX4 - RNF155 HGNC:29151|Ensembl:ENSG00000110042|Vega:OTTHUMG00000167336 11 11q12.1 deltex homolog 4 (Drosophila) protein-coding DTX4 deltex homolog 4 (Drosophila) O E3 ubiquitin-protein ligase DTX4|RING finger protein 155|deltex 4 homolog|deltex4|protein deltex-4 20121230 -9606 23221 RHOBTB2 - DBC2 HGNC:18756|MIM:607352|Ensembl:ENSG00000008853|HPRD:06300|Vega:OTTHUMG00000097827 8 8p21.3 Rho-related BTB domain containing 2 protein-coding RHOBTB2 Rho-related BTB domain containing 2 O deleted in breast cancer 2 gene protein|p83|rho-related BTB domain-containing protein 2 20121230 -9606 23223 RRP12 RP11-452K12.13-007 KIAA0690 HGNC:29100|Ensembl:ENSG00000052749|HPRD:11103|Vega:OTTHUMG00000018855 10 10q24.1 ribosomal RNA processing 12 homolog (S. cerevisiae) protein-coding RRP12 ribosomal RNA processing 12 homolog (S. cerevisiae) O RRP12-like protein 20121230 -9606 23224 SYNE2 - EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH HGNC:17084|MIM:608442|Ensembl:ENSG00000054654|HPRD:09763|Vega:OTTHUMG00000140349 14 14q23.2 spectrin repeat containing, nuclear envelope 2 protein-coding SYNE2 spectrin repeat containing, nuclear envelope 2 O nesprin 2|nesprin-2|nuclear envelope spectrin repeat protein 2|nuclear envelope spectrin repeat-2|nucleus and actin connecting element protein|polytrophin|synaptic nuclear envelope protein 2|synaptic nuclei expressed gene 2 20121230 -9606 23225 NUP210 PSEC0245 GP210|POM210 HGNC:30052|MIM:607703|Ensembl:ENSG00000132182|HPRD:06368|Vega:OTTHUMG00000157268 3 3p25.1 nucleoporin 210kDa protein-coding NUP210 nucleoporin 210kDa O nuclear envelope pore membrane protein POM 210|nuclear pore membrane glycoprotein 210|nuclear pore protein gp210|nucleoporin Nup210|pore membrane protein of 210 kDa 20121230 -9606 23228 PLCL2 - PLCE2 HGNC:9064|MIM:614276|Ensembl:ENSG00000154822|HPRD:07147|Vega:OTTHUMG00000155467 3 3p24.3 phospholipase C-like 2 protein-coding PLCL2 phospholipase C-like 2 O PLC-L(2)|PLC-L2|PLC-epsilon-2|inactive phospholipase C-like protein 2|phospholipase C, epsilon 2|phospholipase C-L2|phospholipase C-epsilon-2 20121230 -9606 23229 ARHGEF9 RP11-357C3.4 COLLYBISTIN|EIEE8|HPEM-2|PEM-2|PEM2 HGNC:14561|MIM:300429|Ensembl:ENSG00000131089|HPRD:02337|Vega:OTTHUMG00000021700 X Xq11.1 Cdc42 guanine nucleotide exchange factor (GEF) 9 protein-coding ARHGEF9 Cdc42 guanine nucleotide exchange factor (GEF) 9 O PEM-2 homolog|hPEM-2 collybistin|rac/Cdc42 guanine nucleotide exchange factor 9|rho guanine nucleotide exchange factor 9 20121230 -9606 23230 VPS13A RP11-498N2.1 CHAC|CHOREIN HGNC:1908|MIM:605978|Ensembl:ENSG00000197969|HPRD:05814|Vega:OTTHUMG00000020055 9 9q21 vacuolar protein sorting 13 homolog A (S. cerevisiae) protein-coding VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae) O chorea-acanthocytosis protein|vacuolar protein sorting 13A|vacuolar protein sorting-associated protein 13A 20121230 -9606 23231 SEL1L3 - Sel-1L3 HGNC:29108|Ensembl:ENSG00000091490|HPRD:11105|Vega:OTTHUMG00000160331 4 4p15.2 sel-1 suppressor of lin-12-like 3 (C. elegans) protein-coding SEL1L3 sel-1 suppressor of lin-12-like 3 (C. elegans) O protein sel-1 homolog 3|suppressor of lin-12-like protein 3 20121230 -9606 23232 TBC1D12 - - HGNC:29082|Ensembl:ENSG00000108239|Vega:OTTHUMG00000018794 10 10q23.33 TBC1 domain family, member 12 protein-coding TBC1D12 TBC1 domain family, member 12 O TBC1 domain family member 12 20121230 -9606 23233 EXOC6B - SEC15B|SEC15L2 HGNC:17085|MIM:607880|Ensembl:ENSG00000144036|Vega:OTTHUMG00000152723 2 2p13.2 exocyst complex component 6B protein-coding EXOC6B exocyst complex component 6B O SEC15 homolog B|SEC15-like 2|SEC15-like protein 2|WUGSC:H_NH0343N14.1|exocyst complex component Sec15B 20121230 -9606 23234 DNAJC9 - HDJC9|JDD1|SB73 HGNC:19123|MIM:611206|Ensembl:ENSG00000213551|HPRD:13237|Vega:OTTHUMG00000018461 10 10q22.2 DnaJ (Hsp40) homolog, subfamily C, member 9 protein-coding DNAJC9 DnaJ (Hsp40) homolog, subfamily C, member 9 O DnaJ protein SB73|dnaJ homolog subfamily C member 9 20121230 -9606 23235 SIK2 - LOH11CR1I|QIK|SNF1LK2 HGNC:21680|MIM:608973|Ensembl:ENSG00000170145|HPRD:12348|Vega:OTTHUMG00000150644 11 11q23.1 salt-inducible kinase 2 protein-coding SIK2 salt-inducible kinase 2 O SIK-2|SNF1-like kinase 2|qin-induced kinase|salt-inducible protein kinase 2|salt-inducible serine/threonine kinase 2|serine/threonine-protein kinase SIK2|serine/threonine-protein kinase SNF1-like kinase 2 20121230 -9606 23236 PLCB1 RP4-654A7.1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B HGNC:15917|MIM:607120|Ensembl:ENSG00000182621|HPRD:06177|Vega:OTTHUMG00000031849 20 20p12 phospholipase C, beta 1 (phosphoinositide-specific) protein-coding PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) O 1-phosphatidyl-D-myo-inositol-4,5-bisphosphate|1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta 1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-1|PLC-beta-1|inositoltrisphosphohydrolase|monophosphatidylinositol phosphodiesterase|phosphoinositidase C|phosphoinositide phospholipase C-beta-1|phospholipase C-I|phospholipase C-beta-1|triphosphoinositide phosphodiesterase 20121230 -9606 23237 ARC - Arg3.1 HGNC:648|MIM:612461|Ensembl:ENSG00000198576|HPRD:12469|Vega:OTTHUMG00000134310 8 8q24.3 activity-regulated cytoskeleton-associated protein protein-coding ARC activity-regulated cytoskeleton-associated protein O ARC/ARG3.1|activity-regulated gene 3.1 protein homolog 20121230 -9606 23239 PHLPP1 - PHLPP|PLEKHE1|SCOP HGNC:20610|MIM:609396|Ensembl:ENSG00000081913|HPRD:15145|Vega:OTTHUMG00000150629 18 18q21.33 PH domain and leucine rich repeat protein phosphatase 1 protein-coding PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 O PH domain leucine-rich repeat-containing protein phosphatase 1|PH domain-containing family E member 1|SCN circadian oscillatory protein|pleckstrin homology domain containing, family E (with leucine rich repeats) member 1|suprachiasmatic nucleus circadian oscillatory protein 20121230 -9606 23240 KIAA0922 - TMEM131L HGNC:29146|Ensembl:ENSG00000121210|HPRD:13823|Vega:OTTHUMG00000153244 4 4q31.3 KIAA0922 protein-coding KIAA0922 KIAA0922 O transmembrane protein 131-like 20121230 -9606 23241 PACS2 - PACS-2|PACS1L HGNC:23794|MIM:610423|Ensembl:ENSG00000179364|HPRD:17816|Vega:OTTHUMG00000170450 14 14q32.33 phosphofurin acidic cluster sorting protein 2 protein-coding PACS2 phosphofurin acidic cluster sorting protein 2 O PACS1-like protein 20121230 -9606 23242 COBL - - HGNC:22199|MIM:610317|Ensembl:ENSG00000106078|HPRD:10843|Vega:OTTHUMG00000155999 7 7p12.1 cordon-bleu WH2 repeat protein protein-coding COBL cordon-bleu WH2 repeat protein O cordon-bleu homolog|protein cordon-bleu 20121230 -9606 23243 ANKRD28 - PITK|PPP1R65 HGNC:29024|MIM:611122|Ensembl:ENSG00000206560|HPRD:10651|Vega:OTTHUMG00000155379 3 3p25.1 ankyrin repeat domain 28 protein-coding ANKRD28 ankyrin repeat domain 28 O PP6-ARS-A|ankyrin repeat domain-containing protein 28|phosphatase interactor targeting K protein|phosphatase interactor targeting protein hnRNP K|protein phosphatase 1, regulatory subunit 65|protein phosphatase 6 ankyrin repeat subunit A|serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A|serine/threonine-protein phosphatase 6 regulatory subunit ARS-A 20121230 -9606 23244 PDS5A PIG54 SCC-112|SCC112 HGNC:29088|MIM:613200|Ensembl:ENSG00000121892|HPRD:11537|Vega:OTTHUMG00000160582 4 4p14 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) protein-coding PDS5A PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) O cell proliferation-inducing gene 54 protein|sister chromatid cohesion protein 112|sister chromatid cohesion protein PDS5 homolog A 20121230 -9606 23245 ASTN2 RP11-45A16.2 bA67K19.1 HGNC:17021|MIM:612856|Ensembl:ENSG00000148219|HPRD:12498|Vega:OTTHUMG00000021013 9 9q33.1 astrotactin 2 protein-coding ASTN2 astrotactin 2 O astrotactin-2|bA264C15.1 20121230 -9606 23246 BOP1 - - HGNC:15519|MIM:610596|Ensembl:ENSG00000170727|HPRD:16558|Vega:OTTHUMG00000165111 8 8q24.3 block of proliferation 1 protein-coding BOP1 block of proliferation 1 O block of proliferation 1 protein|ribosome biogenesis protein BOP1 20121230 -9606 23247 KIAA0556 - - HGNC:29068|Ensembl:ENSG00000047578|HPRD:13806|Vega:OTTHUMG00000176780 16 16p12.1 KIAA0556 protein-coding KIAA0556 KIAA0556 O uncharacterized protein KIAA0556 20121230 -9606 23248 RPRD2 HSPC099 KIAA0460 HGNC:29039|MIM:614695|Ensembl:ENSG00000163125|Vega:OTTHUMG00000012808 1 1q21.3 regulation of nuclear pre-mRNA domain containing 2 protein-coding RPRD2 regulation of nuclear pre-mRNA domain containing 2 O regulation of nuclear pre-mRNA domain-containing protein 2 20121230 -9606 23250 ATP11A RP11-120K24.1 ATPIH|ATPIS HGNC:13552|MIM:605868|Ensembl:ENSG00000068650|HPRD:12059|Vega:OTTHUMG00000017371 13 13q34 ATPase, class VI, type 11A protein-coding ATP11A ATPase, class VI, type 11A O phospholipid-translocating ATPase|potential phospholipid-transporting ATPase IH|probable phospholipid-transporting ATPase IH 20121230 -9606 23251 KIAA1024 - - HGNC:29172|Ensembl:ENSG00000169330|HPRD:17206|Vega:OTTHUMG00000172073 15 15q25.1 KIAA1024 protein-coding KIAA1024 KIAA1024 O UPF0258 protein KIAA1024 20121230 -9606 23252 OTUD3 RP11-91K11.3 DUBA4|RP11-460G22.1 HGNC:29038|MIM:611758|Ensembl:ENSG00000169914|Vega:OTTHUMG00000002696 1 1p36.13 OTU domain containing 3 protein-coding OTUD3 OTU domain containing 3 O OTU domain-containing protein 3 20121230 -9606 23253 ANKRD12 - ANCO-2|ANCO1|GAC-1|Nbla00144 HGNC:29135|MIM:610616|Ensembl:ENSG00000101745|HPRD:12457|Vega:OTTHUMG00000131595 18 18p11.22 ankyrin repeat domain 12 protein-coding ANKRD12 ankyrin repeat domain 12 O ankyrin repeat domain-containing protein 12|ankyrin repeat-containing cofactor 2 20121230 -9606 23254 KAZN RP1-21O18.1 KAZ HGNC:29173|Ensembl:ENSG00000189337|HPRD:11122|Vega:OTTHUMG00000002042 1 1p36.21 kazrin, periplakin interacting protein protein-coding KAZN kazrin, periplakin interacting protein O kazrin 20121230 -9606 23255 SOGA2 - CCDC165|KIAA0802 HGNC:29121|Ensembl:ENSG00000168502|HPRD:11110|Vega:OTTHUMG00000131594 18 18p11.22 SOGA family member 2 protein-coding SOGA2 SOGA family member 2 O coiled-coil domain containing 165|coiled-coil domain-containing protein 165|protein SOGA2 20121230 -9606 23256 SCFD1 FKSG23 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 HGNC:20726|Ensembl:ENSG00000092108|HPRD:10210|Vega:OTTHUMG00000029420 14 14q12 sec1 family domain containing 1 protein-coding SCFD1 sec1 family domain containing 1 O SLY1 homolog|sec1 family domain-containing protein 1|syntaxin-binding protein 1-like 2|vesicle transport-related protein 20121230 -9606 23258 DENND5A - RAB6IP1 HGNC:19344|Ensembl:ENSG00000184014|HPRD:11475|Vega:OTTHUMG00000165716 11 11p15.4 DENN/MADD domain containing 5A protein-coding DENND5A DENN/MADD domain containing 5A O DENN domain-containing protein 5A|RAB6 interacting protein 1|rab6-interacting protein 1 20121230 -9606 23259 DDHD2 - SAMWD1|SPG54 HGNC:29106|MIM:615003|Ensembl:ENSG00000085788|HPRD:16788|Vega:OTTHUMG00000164095 8 8p11.23 DDHD domain containing 2 protein-coding DDHD2 DDHD domain containing 2 O DDHD domain-containing protein 2|PA-PLA1 like|SAM, WWE and DDHD domain containing 1|SAM, WWE and DDHD domain-containing protein 1|phospholipase DDHD2|sec23p-interacting protein p125-like phosphatidic acid-preferring phospholipase A1 20121230 -9606 23261 CAMTA1 RP3-467L1.1 CANPMR HGNC:18806|MIM:611501|Ensembl:ENSG00000171735|HPRD:16681|Vega:OTTHUMG00000001212 1 1p36.31-p36.23 calmodulin binding transcription activator 1 protein-coding CAMTA1 calmodulin binding transcription activator 1 O calmodulin-binding transcription activator 1 20121230 -9606 23262 PPIP5K2 - HISPPD1|IP7K2|VIP2 HGNC:29035|MIM:611648|Ensembl:ENSG00000145725|HPRD:13802|Vega:OTTHUMG00000162812 5 5q21.1 diphosphoinositol pentakisphosphate kinase 2 protein-coding PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 O VIP1 homolog 2|histidine acid phosphatase domain containing 1|histidine acid phosphatase domain-containing protein 1|hsVIP2|inositol heptaphosphate kinase 2|inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2|insP6 and PP-IP5 kinase 2 20121230 -9606 23263 MCF2L RP11-98F14.2 ARHGEF14|DBS|OST HGNC:14576|MIM:609499|Ensembl:ENSG00000126217|HPRD:14371|Vega:OTTHUMG00000017377 13 13q34 MCF.2 cell line derived transforming sequence-like protein-coding MCF2L MCF.2 cell line derived transforming sequence-like O DBL's big sister|MCF2 transforming sequence-like protein|guanine nucleotide exchange factor DBS 20121230 -9606 23264 ZC3H7B - RoXaN HGNC:30869|Ensembl:ENSG00000100403|HPRD:06711|Vega:OTTHUMG00000150969 22 22q13.2 zinc finger CCCH-type containing 7B protein-coding ZC3H7B zinc finger CCCH-type containing 7B O Rotavirus 'X' associated non-structural protein|rotavirus 'X'-associated non-structural protein|rotavirus X protein associated with NSP3|ubiquitous tetratricopeptide containing protein RoXaN|zinc finger CCCH domain-containing protein 7B 20121230 -9606 23265 EXOC7 - 2-5-3p|EX070|EXO70|EXOC1|Exo70p|YJL085W HGNC:23214|MIM:608163|Ensembl:ENSG00000182473|HPRD:16292|Vega:OTTHUMG00000150720 17 17q25.1 exocyst complex component 7 protein-coding EXOC7 exocyst complex component 7 O exocyst complex component Exo70 20121230 -9606 23266 LPHN2 - CIRL2|CL2|LEC1|LPHH1 HGNC:18582|MIM:607018|Ensembl:ENSG00000117114|HPRD:06116|Vega:OTTHUMG00000009844 1 1p31.1 latrophilin 2 protein-coding LPHN2 latrophilin 2 O CIRL-2|calcium-independent alpha-latrotoxin receptor 2|latrophilin 1|latrophilin homolog 1|latrophilin homolog 2 (cow)|latrophilin-2|lectomedin-1 20121230 -9606 23268 DNMBP RP11-114F7.3 ARHGEF36|TUBA HGNC:30373|MIM:611282|Ensembl:ENSG00000107554|HPRD:10918|Vega:OTTHUMG00000018897 10 10q24.2 dynamin binding protein protein-coding DNMBP dynamin binding protein O dynamin-binding protein|scaffold protein TUBA 20121230 -9606 23269 MGA - MAD5|MXD5 HGNC:14010|Ensembl:ENSG00000174197|Vega:OTTHUMG00000172719 15 15q14 MGA, MAX dimerization protein protein-coding MGA MGA, MAX dimerization protein O MAX dimerization protein 5|MAX gene associated|MAX gene-associated protein 20121230 -9606 23270 TSPYL4 RP3-486I3.2 dJ486I3.2 HGNC:21559|Ensembl:ENSG00000187189|HPRD:18236|Vega:OTTHUMG00000015429 6 6q22.1 TSPY-like 4 protein-coding TSPYL4 TSPY-like 4 O TSPY-like protein 4|testis-specific Y-encoded-like protein 4 20121230 -9606 23271 CAMSAP2 RP11-93N17.1 CAMSAP1L1 HGNC:29188|MIM:613775|Ensembl:ENSG00000118200|HPRD:11124|Vega:OTTHUMG00000035740 1 1q32.1 calmodulin regulated spectrin-associated protein family, member 2 protein-coding CAMSAP2 calmodulin regulated spectrin-associated protein family, member 2 O calmodulin regulated spectrin-associated protein 1-like 1|calmodulin-regulated spectrin-associated protein 1-like protein 1|calmodulin-regulated spectrin-associated protein 2 20121230 -9606 23272 FAM208A - C3orf63|RAP140|se89-1 HGNC:30314|Ensembl:ENSG00000163946|HPRD:10183|Vega:OTTHUMG00000158827 3 3p14.3 family with sequence similarity 208, member A protein-coding FAM208A family with sequence similarity 208, member A O CTCL tumor antigen se89-1|protein FAM208A|retinoblastoma-associated protein 140|retinoblastoma-associated protein RAP140 20121230 -9606 23274 CLEC16A - Gop-1|KIAA0350 HGNC:29013|MIM:611303|Ensembl:ENSG00000038532|HPRD:17185|Vega:OTTHUMG00000152915 16 16p13.13 C-type lectin domain family 16, member A protein-coding CLEC16A C-type lectin domain family 16, member A O protein CLEC16A 20121230 -9606 23275 POFUT2 - C21orf80|FUT13 HGNC:14683|MIM:610249|Ensembl:ENSG00000186866|HPRD:09846|Vega:OTTHUMG00000084874 21 21q22.3 protein O-fucosyltransferase 2 protein-coding POFUT2 protein O-fucosyltransferase 2 O GDP-fucose protein O-fucosyltransferase 2|O-FucT-2|peptide-O-fucosyltransferase 2 20121230 -9606 23276 KLHL18 OK/SW-cl.74 - HGNC:29120|Ensembl:ENSG00000114648|HPRD:10017|Vega:OTTHUMG00000156522 3 3p21.31 kelch-like 18 (Drosophila) protein-coding KLHL18 kelch-like 18 (Drosophila) O kelch-like protein 18 20121230 -9606 23277 CLUH - CLU1|KIAA0664 HGNC:29094|Ensembl:ENSG00000132361|HPRD:10014|Vega:OTTHUMG00000177575 17 17p13.3 clustered mitochondria (cluA/CLU1) homolog protein-coding CLUH clustered mitochondria (cluA/CLU1) homolog O clustered mitochondria protein homolog 20121230 -9606 23279 NUP160 - - HGNC:18017|MIM:607614|Ensembl:ENSG00000030066|HPRD:16254|Vega:OTTHUMG00000166534 11 11p11.2 nucleoporin 160kDa protein-coding NUP160 nucleoporin 160kDa O 160 kDa nucleoporin|nuclear pore complex protein Nup160|nucleoporin Nup160 20121230 -9606 23281 MTUS2 RP11-274A8.2 CAZIP|KIAA0774|TIP150 HGNC:20595|Ensembl:ENSG00000132938|HPRD:11108|Vega:OTTHUMG00000016657 13 13q12.3 microtubule associated tumor suppressor candidate 2 protein-coding MTUS2 microtubule associated tumor suppressor candidate 2 O +TIP of 150 kDa|cardiac zipper protein|microtubule plus-end tracking protein TIP150|microtubule-associated tumor suppressor candidate 2|tracking protein of 150 kDa 20121230 -9606 23283 CSTF2T - CstF-64T HGNC:17086|MIM:611968|Ensembl:ENSG00000177613|HPRD:09900|Vega:OTTHUMG00000018246 10 10q11 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant protein-coding CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant O CF-1 64 kDa subunit tau|CSTF 64 kDa subunit tau|cleavage stimulation factor 64 kDa subunit tau|cleavage stimulation factor subunit 2 tau|cleavage stimulation factor subunit 2 tau variant|tauCstF-64 20121230 -9606 23284 LPHN3 - CIRL3|LEC3 HGNC:20974|Ensembl:ENSG00000150471|HPRD:10055|Vega:OTTHUMG00000160690 4 4q13.1 latrophilin 3 protein-coding LPHN3 latrophilin 3 O CIRL-3|calcium-independent alpha-latrotoxin receptor 3|latrophilin homolog 3 (cow)|latrophilin-3|lectomedin 3 20121230 -9606 23285 KIAA1107 - - HGNC:29192|Ensembl:ENSG00000069712|Vega:OTTHUMG00000010292 1 1p22.1 KIAA1107 protein-coding KIAA1107 KIAA1107 O uncharacterized protein KIAA1107 20121230 -9606 23286 WWC1 - HBEBP3|HBEBP36|KIBRA HGNC:29435|MIM:610533|Ensembl:ENSG00000113645|HPRD:10033|Vega:OTTHUMG00000130408 5 5q34 WW and C2 domain containing 1 protein-coding WWC1 WW and C2 domain containing 1 O HBeAg-binding protein 3|WW, C2 and coiled-coil domain containing 1|kidney and brain protein|protein KIBRA|protein WWC1 20121230 -9606 23287 AGTPBP1 RP11-30C23.1 CCP1|NNA1 HGNC:17258|MIM:606830|Ensembl:ENSG00000135049|HPRD:08442|Vega:OTTHUMG00000020124 9 9q21.33 ATP/GTP binding protein 1 protein-coding AGTPBP1 ATP/GTP binding protein 1 O ATP/GTP-binding protein 1|carboxypeptidase-tubulin|cytosolic carboxypeptidase 1|nervous system nuclear protein induced by axotomy protein 1 homolog|soluble carboxypeptidase|tubulinyl-Tyr carboxypeptidase|tyrosine carboxypeptidase 20121230 -9606 23288 IQCE - 1700028P05Rik HGNC:29171|Ensembl:ENSG00000106012|HPRD:11050|Vega:OTTHUMG00000152047 7 7p22.3 IQ motif containing E protein-coding IQCE IQ motif containing E O IQ domain-containing protein E 20121230 -9606 23291 FBXW11 - BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos HGNC:13607|MIM:605651|Ensembl:ENSG00000072803|HPRD:07294|Vega:OTTHUMG00000163267 5 5q35.1 F-box and WD repeat domain containing 11 protein-coding FBXW11 F-box and WD repeat domain containing 11 O F-box and WD repeats protein beta-TrCP2|F-box and WD-40 domain protein 11|F-box and WD-40 domain protein 1B|F-box protein Fbw1b|F-box/WD repeat-containing protein 11|F-box/WD repeat-containing protein 1B|beta-transducin repeat-containing protein 2|homologous to Slimb protein 20121230 -9606 23293 SMG6 - C17orf31|EST1A|SMG-6|hSMG5/7a HGNC:17809|MIM:610963|Ensembl:ENSG00000070366|HPRD:06502|Vega:OTTHUMG00000177578 17 17p13.3 smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding SMG6 smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) O EST1 telomerase component homolog A|EST1-like protein A|ever shorter telomeres 1A|telomerase subunit EST1A|telomerase-binding protein EST1A 20121230 -9606 23294 ANKS1A - ANKS1 HGNC:20961|MIM:608994|Ensembl:ENSG00000064999|HPRD:10610|Vega:OTTHUMG00000014559 6 6p21.31 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A O Odin|ankyrin repeat and SAM domain containing 1|ankyrin repeat and SAM domain-containing protein 1A 20121230 -9606 23295 MGRN1 - RNF156 HGNC:20254|MIM:607559|Ensembl:ENSG00000102858|HPRD:07397|Vega:OTTHUMG00000176436 16 16p13.3 mahogunin ring finger 1, E3 ubiquitin protein ligase protein-coding MGRN1 mahogunin ring finger 1, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MGRN1|RING finger protein 156|mahogunin RING finger protein 1|mahogunin, ring finger 1|probable E3 ubiquitin-protein ligase MGRN1 20121230 -9606 23299 BICD2 RP11-476B13.3 bA526D8.1 HGNC:17208|MIM:609797|Ensembl:ENSG00000185963|HPRD:09826|Vega:OTTHUMG00000021036 9 9q22.31 bicaudal D homolog 2 (Drosophila) protein-coding BICD2 bicaudal D homolog 2 (Drosophila) O bic-D 2|coiled-coil protein BICD2|cytoskeleton-like bicaudal D protein homolog 2|homolog of Drosophila bicaudal D|protein bicaudal D homolog 2 20121230 -9606 23300 ATMIN - ASCIZ|ZNF822 HGNC:29034|MIM:614693|Ensembl:ENSG00000166454|HPRD:17188|Vega:OTTHUMG00000176469 16 16q23.2 ATM interactor protein-coding ATMIN ATM interactor O ATM INteracting protein|ATM/ATR-Substrate Chk2-Interacting Zn++-finger protein|ATM/ATR-substrate CHEK2-interacting zinc finger protein|ATM/ATR-substrate CHK2-interacting zinc finger protein|zinc finger protein 822 20121230 -9606 23301 EHBP1 - HPC12|NACSIN HGNC:29144|MIM:609922|Ensembl:ENSG00000115504|HPRD:10109|Vega:OTTHUMG00000129453 2 2p15 EH domain binding protein 1 protein-coding EHBP1 EH domain binding protein 1 O EH domain-binding protein 1|NPF calponin-like protein 20121230 -9606 23302 WSCD1 - - HGNC:29060|Ensembl:ENSG00000179314|HPRD:17193|Vega:OTTHUMG00000177794 17 17p13.2 WSC domain containing 1 protein-coding WSCD1 WSC domain containing 1 O WSC domain-containing protein 1 20121230 -9606 23303 KIF13B - GAKIN HGNC:14405|MIM:607350|Ensembl:ENSG00000197892|HPRD:09556|Vega:OTTHUMG00000164032 8 8p12 kinesin family member 13B protein-coding KIF13B kinesin family member 13B O guanylate kinase associated kinesin|kinesin 13B|kinesin-like protein GAKIN|kinesin-like protein KIF13B 20121230 -9606 23304 UBR2 - C6orf133|RP3-392M17.3|bA49A4.1|dJ242G1.1|dJ392M17.3 HGNC:21289|MIM:609134|Ensembl:ENSG00000024048|HPRD:09853|Vega:OTTHUMG00000014703 6 6p21.1 ubiquitin protein ligase E3 component n-recognin 2 protein-coding UBR2 ubiquitin protein ligase E3 component n-recognin 2 O E3 ubiquitin-protein ligase UBR2|ubiquitin-protein ligase E3-alpha-2|ubiquitin-protein ligase E3-alpha-II 20121230 -9606 23305 ACSL6 - ACS2|FACL6|LACS 6|LACS2|LACS5 HGNC:16496|MIM:604443|Ensembl:ENSG00000164398|HPRD:09190|Vega:OTTHUMG00000150692 5 5q31 acyl-CoA synthetase long-chain family member 6 protein-coding ACSL6 acyl-CoA synthetase long-chain family member 6 O fatty-acid-Coenzyme A ligase, long-chain 6|long fatty acyl-CoA synthetase 2|long-chain-fatty-acid--CoA ligase 6 20121230 -9606 23306 TMEM194A - TMEM194 HGNC:29001|Ensembl:ENSG00000166881|HPRD:13793|Vega:OTTHUMG00000171021 12 12q13.3 transmembrane protein 194A protein-coding TMEM194A transmembrane protein 194A O transmembrane protein 194 20121230 -9606 23307 FKBP15 - FKBP133|KIAA0674|PPP1R76 HGNC:23397|Ensembl:ENSG00000119321|Vega:OTTHUMG00000020518 9 9q32 FK506 binding protein 15, 133kDa protein-coding FKBP15 FK506 binding protein 15, 133kDa O 133 kDa FK506-binding protein|133 kDa FKBP|FK506-binding protein 133kDa|FK506-binding protein 15|FKBP-133|FKBP-15|WAFL|protein phosphatase 1, regulatory subunit 76 20121230 -9606 23308 ICOSLG - B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS HGNC:17087|MIM:605717|Ensembl:ENSG00000160223|HPRD:05757|Vega:OTTHUMG00000086920 21 21q22.3 inducible T-cell co-stimulator ligand protein-coding ICOSLG inducible T-cell co-stimulator ligand O B7 homolog 2|B7 homologue 2|B7-like protein Gl50|B7-related protein 1|ICOS ligand|transmembrane protein B7-H2 ICOS ligand 20121230 -9606 23309 SIN3B - - HGNC:19354|MIM:607777|Ensembl:ENSG00000127511|HPRD:09691 19 19p13.11 SIN3 transcription regulator homolog B (yeast) protein-coding SIN3B SIN3 transcription regulator homolog B (yeast) O SIN3 homolog B, transcription regulator|SIN3 homolog B, transcriptional regulator|histone deacetylase complex subunit Sin3b|paired amphipathic helix protein Sin3b|transcriptional corepressor Sin3b 20121230 -9606 23310 NCAPD3 - CAP-D3|hCAP-D3|hHCP-6|hcp-6 HGNC:28952|MIM:609276|Ensembl:ENSG00000151503|HPRD:11062|Vega:OTTHUMG00000167172 11 11q25 non-SMC condensin II complex, subunit D3 protein-coding NCAPD3 non-SMC condensin II complex, subunit D3 O condensin-2 complex subunit D3 20121230 -9606 23312 DMXL2 - RC3 HGNC:2938|MIM:612186|Ensembl:ENSG00000104093|HPRD:10188|Vega:OTTHUMG00000131749 15 15q21.2 Dmx-like 2 protein-coding DMXL2 Dmx-like 2 O dmX-like protein 2|rabconnectin-3 20121230 -9606 23313 KIAA0930 CTA-268H5.8 C22orf9 HGNC:1314|Ensembl:ENSG00000100364|HPRD:12802|Vega:OTTHUMG00000151263 22 22q13.31 KIAA0930 protein-coding KIAA0930 KIAA0930 O uncharacterized protein KIAA0930 20121230 -9606 23314 SATB2 - - HGNC:21637|MIM:608148|Ensembl:ENSG00000119042|HPRD:12178|Vega:OTTHUMG00000132767 2 2q33 SATB homeobox 2 protein-coding SATB2 SATB homeobox 2 O DNA-binding protein SATB2|SATB family member 2|special AT-rich sequence-binding protein 2 20121230 -9606 23315 SLC9A8 RP5-963K23.3 NHE-8|NHE8 HGNC:20728|MIM:612730|Ensembl:ENSG00000197818|HPRD:18062|Vega:OTTHUMG00000032710 20 20q13.13 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 protein-coding SLC9A8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 O Na(+)/H(+) exchanger 8|sodium/hydrogen exchanger 8|solute carrier family 9 (sodium/hydrogen exchanger)|solute carrier family 9 (sodium/hydrogen exchanger), member 8 20121230 -9606 23316 CUX2 - CDP2|CUTL2 HGNC:19347|MIM:610648|Ensembl:ENSG00000111249|HPRD:10851|Vega:OTTHUMG00000169546 12 12q24.12 cut-like homeobox 2 protein-coding CUX2 cut-like homeobox 2 O homeobox protein cut-like 2|homeobox protein cux-2 20121230 -9606 23317 DNAJC13 - RME8 HGNC:30343|MIM:614334|Ensembl:ENSG00000138246|HPRD:10915|Vega:OTTHUMG00000159674 3 3q22.1 DnaJ (Hsp40) homolog, subfamily C, member 13 protein-coding DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13 O DnaJ domain-containing protein RME-8|RME-8|dnaJ homolog subfamily C member 13|required for receptor-mediated endocytosis 8 20121230 -9606 23318 ZCCHC11 - PAPD3|TUT4 HGNC:28981|MIM:613692|Ensembl:ENSG00000134744|HPRD:15700|Vega:OTTHUMG00000008200 1 1p32.3 zinc finger, CCHC domain containing 11 protein-coding ZCCHC11 zinc finger, CCHC domain containing 11 O PAP associated domain containing 3|TUTase 4|terminal uridylyltransferase 4|zinc finger CCHC domain-containing protein 11 20121230 -9606 23321 TRIM2 - RNF86 HGNC:15974|MIM:614141|Ensembl:ENSG00000109654|HPRD:10279|Vega:OTTHUMG00000155991 4 4q31.3 tripartite motif containing 2 protein-coding TRIM2 tripartite motif containing 2 O E3 ubiquitin-protein ligase TRIM2|RING finger protein 86|tripartite motif protein 2|tripartite motif protein TRIM2|tripartite motif-containing 2|tripartite motif-containing protein 2 20121230 -9606 23322 RPGRIP1L - CORS3|FTM|JBTS7|MKS5|NPHP8 HGNC:29168|MIM:610937|Ensembl:ENSG00000103494|HPRD:17204|Vega:OTTHUMG00000173125 16 16q12.2 RPGRIP1-like protein-coding RPGRIP1L RPGRIP1-like O RPGR-interacting protein 1-like protein|fantom homolog|nephrocystin-8|protein fantom 20121230 -9606 23324 MAN2B2 - - HGNC:29623|Ensembl:ENSG00000013288|HPRD:14355|Vega:OTTHUMG00000160073 4 4p16.1 mannosidase, alpha, class 2B, member 2 protein-coding MAN2B2 mannosidase, alpha, class 2B, member 2 O core-specific lysosomal alpha-1,6-Mannosidase|epididymis-specific alpha-mannosidase 20121230 -9606 23325 KIAA1033 - SWIP HGNC:29174|Ensembl:ENSG00000136051|HPRD:13829|Vega:OTTHUMG00000169838 12 12q24.11 KIAA1033 protein-coding KIAA1033 KIAA1033 O WASH complex subunit 7|strumpellin and WASH-interacting protein 20121230 -9606 23326 USP22 - USP3L HGNC:12621|MIM:612116|Ensembl:ENSG00000124422|Vega:OTTHUMG00000133621 17 17p11.2 ubiquitin specific peptidase 22 protein-coding USP22 ubiquitin specific peptidase 22 O deubiquitinating enzyme 22|ubiquitin carboxyl-terminal hydrolase 22|ubiquitin specific protease 22|ubiquitin thioesterase 22|ubiquitin thiolesterase 22|ubiquitin-specific processing protease 22|ubiquitin-specific-processing protease 22 20121230 -9606 23327 NEDD4L - NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 HGNC:7728|MIM:606384|Ensembl:ENSG00000049759|HPRD:05903|Vega:OTTHUMG00000179875 18 18q21 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase NEDD4-like|ubiquitin-protein ligase Rsp5 20121230 -9606 23328 SASH1 RP3-323M4.1 SH3D6A|dJ323M4|dJ323M4.1 HGNC:19182|MIM:607955|Ensembl:ENSG00000111961|HPRD:06408|Vega:OTTHUMG00000015773 6 6q24.3 SAM and SH3 domain containing 1 protein-coding SASH1 SAM and SH3 domain containing 1 O 2500002E12Rik|SAM and SH3 domain-containing protein 1|proline-glutamate repeat-containing protein 20121230 -9606 23329 TBC1D30 - - HGNC:29164|Ensembl:ENSG00000111490|Vega:OTTHUMG00000168824 12 12q14.3 TBC1 domain family, member 30 protein-coding TBC1D30 TBC1 domain family, member 30 O TBC1 domain family member 30 20121230 -9606 23331 TTC28 RP3-477H23.1 TPRBK HGNC:29179|Ensembl:ENSG00000100154|HPRD:10020|Vega:OTTHUMG00000151006 22 22q12.1 tetratricopeptide repeat domain 28 protein-coding TTC28 tetratricopeptide repeat domain 28 O TPR repeat protein 28|TPR-containing big gene cloned at Keio|tetratricopeptide repeat protein 28 20121230 -9606 23332 CLASP1 - MAST1 HGNC:17088|MIM:605852|Ensembl:ENSG00000074054|HPRD:09322|Vega:OTTHUMG00000153331 2 2q14.2-q14.3 cytoplasmic linker associated protein 1 protein-coding CLASP1 cytoplasmic linker associated protein 1 O CLIP-associating protein 1|cytoplasmic linker-associated protein 1|multiple asters 1|multiple asters homolog 1|protein Orbit homolog 1 20121230 -9606 23333 DPY19L1 hCG_1645499 - HGNC:22205|MIM:613892|Ensembl:ENSG00000173852|Vega:OTTHUMG00000154888 7 7p14.3-p14.2 dpy-19-like 1 (C. elegans) protein-coding DPY19L1 dpy-19-like 1 (C. elegans) O DPY-19-like protein 1|protein dpy-19 homolog 1 20121230 -9606 23334 SZT2 RP11-506B15.1 C1orf84|KIAA0467|RP11-506B15.3|SZT2A|SZT2B HGNC:29040|Ensembl:ENSG00000198198|HPRD:11085|Vega:OTTHUMG00000007423 1 1p34.2 seizure threshold 2 homolog (mouse) protein-coding SZT2 seizure threshold 2 homolog (mouse) O protein SZT2|seizure threshold 2 protein homolog 20121230 -9606 23335 WDR7 - TRAG HGNC:13490|MIM:613473|Ensembl:ENSG00000091157|HPRD:10306|Vega:OTTHUMG00000132721 18 18q21.31 WD repeat domain 7 protein-coding WDR7 WD repeat domain 7 O TGF-beta resistance associated|TGF-beta resistance-associated protein TRAG|WD repeat-containing protein 7|rabconnectin-3 beta 20121230 -9606 23336 SYNM - DMN|SYN HGNC:24466|MIM:606087|Ensembl:ENSG00000182253|HPRD:07305|Vega:OTTHUMG00000171887 15 15q26.3 synemin, intermediate filament protein protein-coding SYNM synemin, intermediate filament protein O desmuslin|synemin|synemin alpha|synemin beta 20121230 -9606 23338 PHF15 - JADE2 HGNC:22984|MIM:610515|Ensembl:ENSG00000043143|HPRD:15124|Vega:OTTHUMG00000129122 5 5q31.1 PHD finger protein 15 protein-coding PHF15 PHD finger protein 15 O protein Jade-2 20121230 -9606 23339 VPS39 - TLP|VAM6|hVam6p HGNC:20593|MIM:612188|Ensembl:ENSG00000166887|HPRD:10300|Vega:OTTHUMG00000130467 15 15q15.1 vacuolar protein sorting 39 homolog (S. cerevisiae) protein-coding VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae) O TRAP1-like protein|vam6/Vps39-like protein 20121230 -9606 23341 DNAJC16 RP4-680D5.1 - HGNC:29157|Ensembl:ENSG00000116138|HPRD:17202|Vega:OTTHUMG00000002358 1 1p36.1 DnaJ (Hsp40) homolog, subfamily C, member 16 protein-coding DNAJC16 DnaJ (Hsp40) homolog, subfamily C, member 16 O dnaJ homolog subfamily C member 16|novel DnaJ domain-containing protein 20121230 -9606 23344 ESYT1 - FAM62A|MBC2 HGNC:29534|Ensembl:ENSG00000139641|HPRD:14367|Vega:OTTHUMG00000170197 12 12q13.2 extended synaptotagmin-like protein 1 protein-coding ESYT1 extended synaptotagmin-like protein 1 O extended synaptotagmin-1|family with sequence similarity 62 (C2 domain containing), member A|membrane-bound C2 domain-containing protein 20121230 -9606 23345 SYNE1 RP1-130E4.2 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 HGNC:17089|MIM:608441|Ensembl:ENSG00000131018|HPRD:09762|Vega:OTTHUMG00000015841 6 6q25 spectrin repeat containing, nuclear envelope 1 protein-coding SYNE1 spectrin repeat containing, nuclear envelope 1 O enaptin|myocyte nuclear envelope protein 1|nesprin 1|nesprin-1|nuclear envelope spectrin repeat-1|synaptic nuclear envelope protein 1|synaptic nuclei expressed gene 1 20121230 -9606 23347 SMCHD1 - - HGNC:29090|MIM:614982|Ensembl:ENSG00000101596|Vega:OTTHUMG00000178235 18 18p11.32 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 O structural maintenance of chromosomes flexible hinge domain-containing protein 1 20121230 -9606 23348 DOCK9 RP11-155N3.2 ZIZ1|ZIZIMIN1 HGNC:14132|MIM:607325|Ensembl:ENSG00000088387|HPRD:09542|Vega:OTTHUMG00000017260 13 13q32.3 dedicator of cytokinesis 9 protein-coding DOCK9 dedicator of cytokinesis 9 O cdc42 guanine nucleotide exchange factor zizimin-1|dedicator of cytokinesis protein 9 20121230 -9606 23349 KIAA1045 - RP11-392A14.4 HGNC:29180|Ensembl:ENSG00000122733|Vega:OTTHUMG00000019844 9 9p13.3 KIAA1045 protein-coding KIAA1045 KIAA1045 O protein KIAA1045 20121230 -9606 23350 U2SURP - SR140|fSAPa HGNC:30855|Ensembl:ENSG00000163714|Vega:OTTHUMG00000159323 3 3q23 U2 snRNP-associated SURP domain containing protein-coding U2SURP U2 snRNP-associated SURP domain containing O 140 kDa Ser/Arg-rich domain protein|Ser/Arg-rich domain protein, 140 kDa|U2 associated SR140 protein|U2 snRNP-associated SURP motif-containing protein|U2-associated SR140 protein|U2-associated protein SR140|functional spliceosome-associated protein a 20121230 -9606 23351 KHNYN - KIAA0323 HGNC:20166|Ensembl:ENSG00000100441|HPRD:11076|Vega:OTTHUMG00000171312 14 14q12 KH and NYN domain containing protein-coding KHNYN KH and NYN domain containing O KH and NYN domain-containing protein|protein KHNYN 20121230 -9606 23352 UBR4 RP5-1126H10.1 RBAF600|ZUBR1|p600 HGNC:30313|MIM:609890|Ensembl:ENSG00000127481|HPRD:10184|Vega:OTTHUMG00000002498 1 1p36.13 ubiquitin protein ligase E3 component n-recognin 4 protein-coding UBR4 ubiquitin protein ligase E3 component n-recognin 4 O E3 ubiquitin-protein ligase UBR4|N-recognin-4|retinoblastoma-associated factor 600-like protein|retinoblastoma-associated factor of 600 kDa|zinc finger UBR1-type protein 1 20121230 -9606 23353 SUN1 - UNC84A HGNC:18587|MIM:607723|Ensembl:ENSG00000164828|HPRD:16257|Vega:OTTHUMG00000151426 7 7p22.3 Sad1 and UNC84 domain containing 1 protein-coding SUN1 Sad1 and UNC84 domain containing 1 O SUN domain-containing protein 1|Sad1 unc-84 domain protein 1|protein unc-84 homolog A|sad1/unc-84 protein-like 1|unc-84 homolog A 20121230 -9606 23354 HAUS5 - KIAA0841|dgt5 HGNC:29130|MIM:613432|Ensembl:ENSG00000249115|Vega:OTTHUMG00000048110 19 19q13.12 HAUS augmin-like complex, subunit 5 protein-coding HAUS5 HAUS augmin-like complex, subunit 5 O HAUS augmin-like complex subunit 5 20121230 -9606 23355 VPS8 - KIAA0804 HGNC:29122|Ensembl:ENSG00000156931|HPRD:11111|Vega:OTTHUMG00000156707 3 3q27.2 vacuolar protein sorting 8 homolog (S. cerevisiae) protein-coding VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) O vacuolar protein sorting-associated protein 8 homolog 20121230 -9606 23357 ANGEL1 - KIAA0759 HGNC:19961|Ensembl:ENSG00000013523|HPRD:13815|Vega:OTTHUMG00000171494 14 14q24.3 angel homolog 1 (Drosophila) protein-coding ANGEL1 angel homolog 1 (Drosophila) O protein angel homolog 1 20121230 -9606 23358 USP24 hCG_33036 - HGNC:12623|MIM:610569|Ensembl:ENSG00000162402|Vega:OTTHUMG00000008135 1 1p32.3 ubiquitin specific peptidase 24 protein-coding USP24 ubiquitin specific peptidase 24 O deubiquitinating enzyme 24|ubiquitin carboxyl-terminal hydrolase 24|ubiquitin specific protease 24|ubiquitin thioesterase 24|ubiquitin thiolesterase 24|ubiquitin-specific processing protease 24|ubiquitin-specific-processing protease 24 20121230 -9606 23359 FAM189A1 - TMEM228 HGNC:29075|Ensembl:ENSG00000104059|Vega:OTTHUMG00000172185 15 15q13.1 family with sequence similarity 189, member A1 protein-coding FAM189A1 family with sequence similarity 189, member A1 O protein FAM189A1|transmembrane protein 228 20121230 -9606 23360 FNBP4 - FBP30 HGNC:19752|Ensembl:ENSG00000109920|HPRD:10996|Vega:OTTHUMG00000166533 11 11p11.2 formin binding protein 4 protein-coding FNBP4 formin binding protein 4 O formin-binding protein 30|formin-binding protein 4 20121230 -9606 23361 ZNF629 - ZNF|ZNF65 HGNC:29008|Ensembl:ENSG00000102870|Vega:OTTHUMG00000176905 16 16p11.2 zinc finger protein 629 protein-coding ZNF629 zinc finger protein 629 O DNA-binding protein|zinc finger protein 65 20121230 -9606 23362 PSD3 - EFA6R|HCA67 HGNC:19093|MIM:614440|Ensembl:ENSG00000156011|HPRD:11462|Vega:OTTHUMG00000163711 8 8p21.3 pleckstrin and Sec7 domain containing 3 protein-coding PSD3 pleckstrin and Sec7 domain containing 3 O ADP-ribosylation factor guanine nucleotide factor 6|PH and SEC7 domain-containing protein 3|epididymis tissue protein Li 20mP|exchange factor for ADP-ribosylation factor guanine nucleotide factor 6|hepatocellular carcinoma-associated antigen 67|pleckstrin homology and SEC7 domain-containing protein 3 20121230 -9606 23363 OBSL1 - - HGNC:29092|MIM:610991|Ensembl:ENSG00000124006|Vega:OTTHUMG00000059157 2 2q35 obscurin-like 1 protein-coding OBSL1 obscurin-like 1 O obscurin-like protein 1 20121230 -9606 23365 ARHGEF12 - LARG|PRO2792 HGNC:14193|MIM:604763|Ensembl:ENSG00000196914|HPRD:09207|Vega:OTTHUMG00000166143 11 11q23.3 Rho guanine nucleotide exchange factor (GEF) 12 protein-coding ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 O leukemia-associated RhoGEF|leukemia-associated rho guanine nucleotide exchange factor|rho guanine nucleotide exchange factor 12 20121230 -9606 23366 KIAA0895 - - HGNC:22206|Ensembl:ENSG00000164542|HPRD:17197|Vega:OTTHUMG00000154939 7 7p14.2 KIAA0895 protein-coding KIAA0895 KIAA0895 O uncharacterized protein KIAA0895 20121230 -9606 23367 LARP1 - LARP HGNC:29531|MIM:612059|Ensembl:ENSG00000155506|HPRD:11225|Vega:OTTHUMG00000130191 5 5q33.2 La ribonucleoprotein domain family, member 1 protein-coding LARP1 La ribonucleoprotein domain family, member 1 O la-related protein 1 20121230 -9606 23368 PPP1R13B - ASPP1|p53BP2-like|p85 HGNC:14950|MIM:606455|Ensembl:ENSG00000088808|HPRD:07345|Vega:OTTHUMG00000171647 14 14q32.33 protein phosphatase 1, regulatory subunit 13B protein-coding PPP1R13B protein phosphatase 1, regulatory subunit 13B O apoptosis-stimulating of p53 protein 1|apoptosis-stimulating protein of p53, 1|protein phosphatase 1 regulatory subunit 13B|protein phosphatase 1, regulatory (inhibitor) subunit 13B 20121230 -9606 23369 PUM2 - PUMH2|PUML2 HGNC:14958|MIM:607205|Ensembl:ENSG00000055917|HPRD:09527|Vega:OTTHUMG00000122098 2 2p22-p21 pumilio homolog 2 (Drosophila) protein-coding PUM2 pumilio homolog 2 (Drosophila) O pumilio homolog 2|pumilio-2 20121230 -9606 23370 ARHGEF18 - P114-RhoGEF HGNC:17090|Ensembl:ENSG00000104880|HPRD:12479 19 19p13.3 Rho/Rac guanine nucleotide exchange factor (GEF) 18 protein-coding ARHGEF18 Rho/Rac guanine nucleotide exchange factor (GEF) 18 O 114 kDa Rho-specific guanine nucleotide exchange factor|P114-RHO-GEF|Rho-specific guanine nucleotide exchange factor p114|Rho/Rac guanine nucleotide exchange factor 18|SA-RhoGEF|p114RhoGEF|rho guanine nucleotide exchange factor 18|septin-associated RhoGEF 20121230 -9606 23371 TENC1 - C1-TEN|C1TEN|TNS2 HGNC:19737|MIM:607717|Ensembl:ENSG00000111077|HPRD:16256|Vega:OTTHUMG00000169730 12 12q13.13 tensin like C1 domain containing phosphatase (tensin 2) protein-coding TENC1 tensin like C1 domain containing phosphatase (tensin 2) O C1 domain-containing phosphatase and tensin homolog|tensin 2|tensin like C1 domain-containing phosphatase|tensin-2|tensin-like C1 domain-containing phosphatase 20121230 -9606 23373 CRTC1 - MECT1|TORC-1|TORC1|WAMTP1 HGNC:16062|MIM:607536|Ensembl:ENSG00000105662|HPRD:06339 19 19p13.11 CREB regulated transcription coactivator 1 protein-coding CRTC1 CREB regulated transcription coactivator 1 O CREB-regulated transcription coactivator 1|mucoepidermoid carcinoma translocated protein 1|transducer of regulated cAMP response element-binding protein (CREB) 1 20121230 -9606 23376 UFL1 - KIAA0776|Maxer|NLBP|RCAD|RP3-393D12.1 HGNC:23039|MIM:613372|Ensembl:ENSG00000014123|HPRD:11109|Vega:OTTHUMG00000015238 6 6q16.1 UFM1-specific ligase 1 protein-coding UFL1 UFM1-specific ligase 1 O E3 UFM1-protein ligase 1|LZAP-binding protein|Regulator of CDK5RAP3 and DDRGK1|novel LZAP-binding protein 20121230 -9606 23378 RRP8 hucep-1 KIAA0409 HGNC:29030|Ensembl:ENSG00000132275|HPRD:13800|Vega:OTTHUMG00000165503 11 11p15.4 ribosomal RNA processing 8, methyltransferase, homolog (yeast) protein-coding RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) O RRP8 methyltransferase homolog|cerebral protein 1|nucleomethylin|ribosomal RNA-processing protein 8 20121230 -9606 23379 KIAA0947 - - HGNC:29154|Ensembl:ENSG00000164151|Vega:OTTHUMG00000161639 5 5p15.32 KIAA0947 protein-coding KIAA0947 KIAA0947 O uncharacterized protein KIAA0947 20121230 -9606 23380 SRGAP2 RP11-421E17.2 ARHGAP34|FNBP2|SRGAP2A|SRGAP3 HGNC:19751|MIM:606524|Ensembl:ENSG00000163486|HPRD:18520|Vega:OTTHUMG00000036347 1 1q32.1 SLIT-ROBO Rho GTPase activating protein 2 protein-coding SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 O SLIT-ROBO Rho GTPase-activating protein 2|formin binding protein 2|formin-binding protein 2|rho GTPase-activating protein 34 20121230 -9606 23381 SMG5 RP11-54H19.7 EST1B|LPTS-RP1|LPTSRP1|SMG-5 HGNC:24644|MIM:610962|Ensembl:ENSG00000198952|HPRD:16869|Vega:OTTHUMG00000017491 1 1q21.2 smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding SMG5 smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) O EST1 telomerase component homolog B|EST1-like protein B|Est1p-like protein B|LPTS interacting protein|LPTS-interacting protein|ever shorter telomeres 1B|hSMG-5|protein SMG5 20121230 -9606 23382 AHCYL2 - ADOHCYASE3 HGNC:22204|Ensembl:ENSG00000158467|HPRD:11113|Vega:OTTHUMG00000157677 7 7q32.1 adenosylhomocysteinase-like 2 protein-coding AHCYL2 adenosylhomocysteinase-like 2 O S-adenosyl-L-homocysteine hydrolase 3|S-adenosylhomocysteine hydrolase-like 2|putative adenosylhomocysteinase 3 20121230 -9606 23383 MAU2 - KIAA0892|MAU2L|SCC4|mau-2 HGNC:29140|MIM:614560|Ensembl:ENSG00000129933|HPRD:11117|Vega:OTTHUMG00000150188 19 19p13.11 MAU2 chromatid cohesion factor homolog (C. elegans) protein-coding MAU2 MAU2 chromatid cohesion factor homolog (C. elegans) O MAU2 chromatid cohesion factor homolog|cohesin loading complex subunit SCC4 homolog|protein MAU-2|sister chromatid cohesion 4 20121230 -9606 23384 SPECC1L - CYTSA|OBLFC1 HGNC:29022|MIM:614140|Ensembl:ENSG00000100014|HPRD:11080|Vega:OTTHUMG00000171450 22 22q11.23 sperm antigen with calponin homology and coiled-coil domains 1-like protein-coding SPECC1L sperm antigen with calponin homology and coiled-coil domains 1-like O SPECC1-like protein|cytokinesis and spindle organization A|cytospin-A|renal carcinoma antigen NY-REN-22 20121230 -9606 23385 NCSTN RP11-517F10.1 APH2 HGNC:17091|MIM:605254|Ensembl:ENSG00000162736|HPRD:05584|Vega:OTTHUMG00000033110 1 1q22-q23 nicastrin protein-coding NCSTN nicastrin O ATAG1874|anterior pharynx-defective 2 20121230 -9606 23386 NUDCD3 hCG_18301 NudCL HGNC:22208|MIM:610296|Ensembl:ENSG00000015676|HPRD:13831|Vega:OTTHUMG00000129174 7 7p13-p12 NudC domain containing 3 protein-coding NUDCD3 NudC domain containing 3 O NudC-like protein|nudC domain-containing protein 3 20121230 -9606 23387 SIK3 L19 QSK|SIK-3 HGNC:29165|MIM:614776|Ensembl:ENSG00000160584|HPRD:11121|Vega:OTTHUMG00000066628 11 11q23.3 SIK family kinase 3 protein-coding SIK3 SIK family kinase 3 O salt-inducible kinase 3|serine/threonine-protein kinase QSK|serine/threonine-protein kinase SIK3 20121230 -9606 23389 MED13L - PROSIT240|THRAP2|TRAP240L HGNC:22962|MIM:608771|Ensembl:ENSG00000123066|HPRD:10579|Vega:OTTHUMG00000169404 12 12q24.21 mediator complex subunit 13-like protein-coding MED13L mediator complex subunit 13-like O mediator of RNA polymerase II transcription subunit 13-like|thyroid hormone receptor-associated protein 2|thyroid hormone receptor-associated protein complex 240 kDa component-like 20121230 -9606 23390 ZDHHC17 HSPC294 HIP14|HIP3|HYPH HGNC:18412|MIM:607799|Ensembl:ENSG00000186908|HPRD:09697|Vega:OTTHUMG00000169917 12 12q21.2 zinc finger, DHHC-type containing 17 protein-coding ZDHHC17 zinc finger, DHHC-type containing 17 O DHHC-17|HIP-14|HIP-3|Huntingtin interacting protein H|huntingtin interacting protein 14|huntingtin interacting protein 3|huntingtin yeast partner H|huntingtin-interacting protein 14|huntingtin-interacting protein 3|huntingtin-interacting protein H|palmitoyltransferase ZDHHC17|putative MAPK-activating protein PM11|putative NF-kappa-B-activating protein 205|zinc finger DHHC domain-containing protein 17|zinc finger, DHHC domain containing 17 20121230 -9606 23392 KIAA0368 RP11-386D8.2 ECM29 HGNC:29020|Ensembl:ENSG00000136813|Vega:OTTHUMG00000020489 9 9q31.3 KIAA0368 protein-coding KIAA0368 KIAA0368 O ECM29 homolog, proteasome accessory protein|homolog of yeast Ecm29|proteasome-associated protein ECM29 homolog 20121230 -9606 23394 ADNP - ADNP1 HGNC:15766|MIM:611386|Ensembl:ENSG00000101126|HPRD:09793|Vega:OTTHUMG00000032737 20 20q13.13 activity-dependent neuroprotector homeobox protein-coding ADNP activity-dependent neuroprotector homeobox O ADNP homeobox 1|activity-dependent neuroprotective protein|activity-dependent neuroprotector homeobox protein 20121230 -9606 23395 LARS2 - LEURS HGNC:17095|MIM:604544|Ensembl:ENSG00000011376|HPRD:05178|Vega:OTTHUMG00000133177 3 3p21.3 leucyl-tRNA synthetase 2, mitochondrial protein-coding LARS2 leucyl-tRNA synthetase 2, mitochondrial O leucine tRNA ligase 2, mitochondrial|leucine tRNA ligase 2, mitocondrial|leucine translase|probable leucine--tRNA ligase, mitochondrial|probable leucyl-tRNA synthetase, mitochondrial 20121230 -9606 23396 PIP5K1C - LCCS3|PIP5K-GAMMA|PIP5Kgamma|PIPKIg_v4 HGNC:8996|MIM:606102|Ensembl:ENSG00000186111|HPRD:05834|Vega:OTTHUMG00000180870 19 19p13.3 phosphatidylinositol-4-phosphate 5-kinase, type I, gamma protein-coding PIP5K1C phosphatidylinositol-4-phosphate 5-kinase, type I, gamma O Human homolog of mouse phosphatidylinositol-4-phosphate 5-kinase I-gamma|PIP5K1-gamma|diphosphoinositide kinase|phosphatidylinositol 4-phosphate 5-kinase type I gamma|phosphatidylinositol 4-phosphate 5-kinase type-1 gamma|phosphatidylinositol-4-phosphate 5-kinase type-1 gamma|ptdIns(4)P-5-kinase 1 gamma|type I PIP kinase 20121230 -9606 23397 NCAPH - BRRN1|CAP-H|HCAP-H HGNC:1112|MIM:602332|Ensembl:ENSG00000121152|HPRD:03820|Vega:OTTHUMG00000130451 2 2q11.2 non-SMC condensin I complex, subunit H protein-coding NCAPH non-SMC condensin I complex, subunit H O XCAP-H homolog|barren homolog 1|barren homolog protein 1|chromosome-associated protein H|condensin complex subunit 2 20121230 -9606 23398 PPWD1 - - HGNC:28954|Ensembl:ENSG00000113593|HPRD:11063|Vega:OTTHUMG00000131226 5 5q12.3 peptidylprolyl isomerase domain and WD repeat containing 1 protein-coding PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 O peptidylprolyl isomerase domain and WD repeat-containing protein 1|spliceosome-associated cyclophilin 20121230 -9606 23399 CTDNEP1 - DULLARD|HSA011916|NET56 HGNC:19085|MIM:610684|Ensembl:ENSG00000175826|HPRD:16845|Vega:OTTHUMG00000102180 17 17p13 CTD nuclear envelope phosphatase 1 protein-coding CTDNEP1 CTD nuclear envelope phosphatase 1 O C-terminal domain nuclear envelope phosphatase 1|dullard homolog|serine/threonine-protein phosphatase dullard 20121230 -9606 23400 ATP13A2 RP1-37C10.4 CLN12|HSA9947|KRPPD|PARK9 HGNC:30213|MIM:610513|Ensembl:ENSG00000159363|HPRD:13677|Vega:OTTHUMG00000002293 1 1p36 ATPase type 13A2 protein-coding ATP13A2 ATPase type 13A2 O probable cation-transporting ATPase 13A2|putative ATPase 20121230 -9606 23401 FRAT2 RP11-452K12.2 - HGNC:16048|MIM:605006|Ensembl:ENSG00000181274|HPRD:05419|Vega:OTTHUMG00000018850 10 10q24.1 frequently rearranged in advanced T-cell lymphomas 2 protein-coding FRAT2 frequently rearranged in advanced T-cell lymphomas 2 O FRAT-2|GSK-3 binding protein FRAT2|GSK-3-binding protein FRAT2 20121230 -9606 23403 FBXO46 - 20D7-FC4|FBXO34L|Fbx46 HGNC:25069|MIM:609117|Ensembl:ENSG00000177051|Vega:OTTHUMG00000182132 19 19q13.3 F-box protein 46 protein-coding FBXO46 F-box protein 46 O F-box only protein 46 20121230 -9606 23404 EXOSC2 RP11-57C19.4 RRP4|Rrp4p|hRrp4p|p7 HGNC:17097|MIM:602238|Ensembl:ENSG00000130713|HPRD:03758|Vega:OTTHUMG00000020811 9 9q34 exosome component 2 protein-coding EXOSC2 exosome component 2 O exosome complex component RRP4|exosome complex exonuclease RRP4|homolog of yeast RRP4 (ribosomal RNA processing 4), 3' 5' exoribonuclease (RRP4)|homolog of yeast RRP4 (ribosomal RNA processing 4), 3'-5'-exoribonuclease|ribosomal RNA-processing protein 4 20121230 -9606 23405 DICER1 - DCR1|Dicer|HERNA|MNG1 HGNC:17098|MIM:606241|Ensembl:ENSG00000100697|HPRD:05875|Vega:OTTHUMG00000166134 14 14q32.13 dicer 1, ribonuclease type III protein-coding DICER1 dicer 1, ribonuclease type III O Dicer1, Dcr-1 homolog|K12H4.8-LIKE|dicer 1, double-stranded RNA-specific endoribonuclease|endoribonuclease Dicer|helicase MOI|helicase with RNAse motif|helicase-moi 20121230 -9606 23406 COTL1 - CLP HGNC:18304|MIM:606748|Ensembl:ENSG00000103187|HPRD:09482|Vega:OTTHUMG00000137634 16 16q24.1 coactosin-like 1 (Dictyostelium) protein-coding COTL1 coactosin-like 1 (Dictyostelium) O coactosin-like protein 20121230 -9606 23408 SIRT5 - SIR2L5 HGNC:14933|MIM:604483|Ensembl:ENSG00000124523|HPRD:06838|Vega:OTTHUMG00000014278 6 6p23 sirtuin 5 protein-coding SIRT5 sirtuin 5 O NAD-dependent deacetylase sirtuin-5|NAD-dependent lysine demalonylase and desuccinylase sirtuin-5, mitochondrial|NAD-dependent protein deacylase sirtuin-5, mitochondrial|SIR2-like protein 5|regulatory protein SIR2 homolog 5|silent mating type information regulation 2, S.cerevisiae, homolog 5|sir2-like 5|sirtuin type 5 20121230 -9606 23409 SIRT4 - SIR2L4 HGNC:14932|MIM:604482|Ensembl:ENSG00000089163|HPRD:06837|Vega:OTTHUMG00000169028 12 12q sirtuin 4 protein-coding SIRT4 sirtuin 4 O NAD-dependent ADP-ribosyltransferase sirtuin-4|NAD-dependent protein deacetylase sirtuin-4|SIR2-like protein 4|regulatory protein SIR2 homolog 4|sir2-like 4|sirtuin type 4 20121230 -9606 23410 SIRT3 - SIR2L3 HGNC:14931|MIM:604481|Ensembl:ENSG00000142082|HPRD:06836|Vega:OTTHUMG00000119074 11 11p15.5 sirtuin 3 protein-coding SIRT3 sirtuin 3 O NAD-dependent deacetylase sirtuin-3, mitochondrial|NAD-dependent protein deacetylase sirtuin-3, mitochondrial|SIR2-like protein 3|mitochondrial nicotinamide adenine dinucleotide-dependent deacetylase|regulatory protein SIR2 homolog 3|silent mating type information regulation 2, S.cerevisiae, homolog 3|sir2-like 3|sirtuin type 3 20121230 -9606 23411 SIRT1 RP11-57G10.3 SIR2L1 HGNC:14929|MIM:604479|Ensembl:ENSG00000096717|HPRD:08381|Vega:OTTHUMG00000018340 10 10q21.3 sirtuin 1 protein-coding SIRT1 sirtuin 1 O NAD-dependent deacetylase sirtuin-1|NAD-dependent protein deacetylase sirtuin-1|SIR2-like protein 1|SIR2alpha|hSIR2|hSIRT1|regulatory protein SIR2 homolog 1|sir2-like 1|sirtuin type 1 20121230 -9606 23412 COMMD3 RP11-573G6.3 BUP|C10orf8 HGNC:23332|Ensembl:ENSG00000148444|HPRD:13082|Vega:OTTHUMG00000017806 10 10p12.2 COMM domain containing 3 protein-coding COMMD3 COMM domain containing 3 O COMM domain-containing protein 3|protein Bup 20121230 -9606 23413 NCS1 - FLUP|FREQ HGNC:3953|MIM:603315|Ensembl:ENSG00000107130|HPRD:04500|Vega:OTTHUMG00000020801 9 9q34 neuronal calcium sensor 1 protein-coding NCS1 neuronal calcium sensor 1 O frequenin homolog|frequenin-like protein|frequenin-like ubiquitous protein 20121230 -9606 23414 ZFPM2 - DIH3|FOG2|ZNF89B|hFOG-2 HGNC:16700|MIM:603693|Ensembl:ENSG00000169946|HPRD:04737|Vega:OTTHUMG00000164818 8 8q23 zinc finger protein, FOG family member 2 protein-coding ZFPM2 zinc finger protein, FOG family member 2 O FOG-2|Friend of GATA2|friend of GATA 2|friend of GATA protein 2|transcription factor GATA4, modulator of|zinc finger protein 89B|zinc finger protein ZFPM2|zinc finger protein, multitype 2 20121230 -9606 23415 KCNH4 - BEC2|ELK1|Kv12.3 HGNC:6253|MIM:604528|Ensembl:ENSG00000089558|HPRD:05165|Vega:OTTHUMG00000180106 17 17q21.2 potassium voltage-gated channel, subfamily H (eag-related), member 4 protein-coding KCNH4 potassium voltage-gated channel, subfamily H (eag-related), member 4 O ELK channel 1|brain-specific eag-like channel 2|ether-a-go-go K(+) channel family member|ether-a-go-go-like potassium channel 1|potassium voltage-gated channel subfamily H member 4|voltage-gated potassium channel subunit Kv12.3 20121230 -9606 23416 KCNH3 - BEC1|ELK2|Kv12.2 HGNC:6252|MIM:604527|Ensembl:ENSG00000135519|HPRD:05164|Vega:OTTHUMG00000169517 12 12q13 potassium voltage-gated channel, subfamily H (eag-related), member 3 protein-coding KCNH3 potassium voltage-gated channel, subfamily H (eag-related), member 3 O ELK channel 2|brain-specific eag-like channel 1|ether-a-go-go K(+) channel family member|ether-a-go-go-like potassium channel 2|potassium voltage-gated channel subfamily H member 3|voltage-gated potassium channel subunit Kv12.2 20121230 -9606 23417 MLYCD - MCD HGNC:7150|MIM:606761|Ensembl:ENSG00000103150|HPRD:05999|Vega:OTTHUMG00000176654 16 16q24 malonyl-CoA decarboxylase protein-coding MLYCD malonyl-CoA decarboxylase O malonyl coenzyme A decarboxylase|malonyl-CoA decarboxylase, mitochondrial 20121230 -9606 23418 CRB1 RP11-53I24.1 LCA8|RP12 HGNC:2343|MIM:604210|Ensembl:ENSG00000134376|HPRD:05019|Vega:OTTHUMG00000035663 1 1q31-q32.1 crumbs homolog 1 (Drosophila) protein-coding CRB1 crumbs homolog 1 (Drosophila) O crumbs homolog 1 20121230 -9606 23420 NOMO1 - Nomo|PM5 HGNC:30060|MIM:609157|Ensembl:ENSG00000103512|HPRD:11398|Vega:OTTHUMG00000090541 16 16p13.11 NODAL modulator 1 protein-coding NOMO1 NODAL modulator 1 O nodal modulator 1|nodal modulator 3|pM5 protein 3|pM5 protein, telomeric copy 20121230 -9606 23421 ITGB3BP - CENP-R|CENPR|HSU37139|NRIF3|TAP20 HGNC:6157|MIM:605494|Ensembl:ENSG00000142856|HPRD:09267|Vega:OTTHUMG00000013364 1 1p31.3 integrin beta 3 binding protein (beta3-endonexin) protein-coding ITGB3BP integrin beta 3 binding protein (beta3-endonexin) O beta 3 endonexin|beta-3-endonexin|centromere protein R|integrin beta-3-binding protein|nuclear receptor-interacting factor 3 20121230 -9606 23423 TMED3 UNQ5357/PRO1078 C15orf22|P24B|p26 HGNC:28889|Ensembl:ENSG00000166557|HPRD:18200|Vega:OTTHUMG00000144170 15 15q24-q25 transmembrane emp24 protein transport domain containing 3 protein-coding TMED3 transmembrane emp24 protein transport domain containing 3 O integral type I protein|membrane protein p24B|p24 family protein gamma-4|p24gamma4|transmembrane emp24 domain containing 3|transmembrane emp24 domain-containing protein 3 20121230 -9606 23424 TDRD7 - CATC4|PCTAIRE2BP|RP11-508D10.1|TRAP HGNC:30831|MIM:611258|Ensembl:ENSG00000196116|HPRD:11626|Vega:OTTHUMG00000020326 9 9q22.33 tudor domain containing 7 protein-coding TDRD7 tudor domain containing 7 O PCTAIRE2-binding protein|tudor domain-containing protein 7|tudor repeat associator with PCTAIRE 2 20121230 -9606 23426 GRIP1 - GRIP HGNC:18708|MIM:604597|Ensembl:ENSG00000155974|Vega:OTTHUMG00000169019 12 12q14.3 glutamate receptor interacting protein 1 protein-coding GRIP1 glutamate receptor interacting protein 1 O glutamate receptor-interacting protein 1 20121230 -9606 23428 SLC7A8 - LAT2|LPI-PC1 HGNC:11066|MIM:604235|Ensembl:ENSG00000092068|HPRD:11971|Vega:OTTHUMG00000028720 14 14q11.2 solute carrier family 7 (amino acid transporter light chain, L system), member 8 protein-coding SLC7A8 solute carrier family 7 (amino acid transporter light chain, L system), member 8 O L-type amino acid transporter 2|integral membrane protein E16H|large neutral amino acids transporter small subunit 2|solute carrier family 7 (amino acid transporter, L-type), member 8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 20121230 -9606 23429 RYBP - AAP1|DEDAF|YEAF1 HGNC:10480|MIM:607535|Ensembl:ENSG00000163602|HPRD:09607|Vega:OTTHUMG00000159190 3 3p13 RING1 and YY1 binding protein protein-coding RYBP RING1 and YY1 binding protein O APAP-1|DED-associated factor|RING1 and YY1-binding protein|YY1 and E4TF1 associated factor 1|YY1 and E4TF1-associated factor 1|apoptin-associating protein 1|death effector domain-associated factor|ring1 interactor RYBP 20121230 -9606 23430 TPSD1 - MCP7-LIKE|MCP7L1|MMCP-7L HGNC:14118|MIM:609272|Ensembl:ENSG00000095917|HPRD:08345|Vega:OTTHUMG00000128511 16 16p13.3 tryptase delta 1 protein-coding TPSD1 tryptase delta 1 O delta-tryptase|hmMCP-3-like tryptase III|mMCP-7-like delta II tryptase|mMCP-7-like-1|mMCP-7-like-2|mast cell tryptase|tryptase delta|tryptase-3 20121230 -9606 23431 AP4E1 - CPSQ4|SPG51 HGNC:573|MIM:607244|Ensembl:ENSG00000081014|HPRD:06258|Vega:OTTHUMG00000172458 15 15q21.2 adaptor-related protein complex 4, epsilon 1 subunit protein-coding AP4E1 adaptor-related protein complex 4, epsilon 1 subunit O AP-4 complex subunit epsilon-1|adaptor-related protein complex AP-4 epsilon|epsilon-adaptin 20121230 -9606 23432 GPR161 - RE2 HGNC:23694|MIM:612250|Ensembl:ENSG00000143147|HPRD:17070|Vega:OTTHUMG00000034651 1 1q24.2 G protein-coupled receptor 161 protein-coding GPR161 G protein-coupled receptor 161 O G-protein coupled receptor 161|G-protein coupled receptor RE2 20121230 -9606 23433 RHOQ - ARHQ|RASL7A|TC10|TC10A HGNC:17736|MIM:605857|Ensembl:ENSG00000119729|HPRD:05791|Vega:OTTHUMG00000150653 2 2p21 ras homolog family member Q protein-coding RHOQ ras homolog family member Q O RAS-like, family 7, member A|ras homolog gene family, member Q|ras-like protein TC10|ras-like protein family member 7A|rho-related GTP-binding protein RhoQ 20121230 -9606 23434 C3orf27 - GR6 HGNC:17099|Ensembl:ENSG00000198685|HPRD:13607|Vega:OTTHUMG00000159688 3 3q21 chromosome 3 open reading frame 27 protein-coding C3orf27 chromosome 3 open reading frame 27 O protein GR6|putative GR6 protein 20121230 -9606 23435 TARDBP RP4-635E18.2 ALS10|TDP-43 HGNC:11571|MIM:605078|Ensembl:ENSG00000120948|HPRD:05466|Vega:OTTHUMG00000002120 1 1p36.22 TAR DNA binding protein protein-coding TARDBP TAR DNA binding protein O TAR DNA-binding protein 43|TAR DNA-binding protein-43 20121230 -9606 23436 CELA3B RP11-26H16.3 CBPP|E1|EL-1|ELA3B HGNC:15945|Ensembl:ENSG00000219073|HPRD:06498|Vega:OTTHUMG00000002758 1 1p36.12 chymotrypsin-like elastase family, member 3B protein-coding CELA3B chymotrypsin-like elastase family, member 3B O cholesterol-binding pancreatic protease|chymotrypsin-like elastase family member 3B|elastase 1|elastase 3B, pancreatic|elastase IIIB|elastase-3B|fecal elastase 1|pancreatic elastase 1|pancreatic endopeptidase E|protease E|proteinase E 20121230 -9606 23437 TRNAS2 - TRNS|TRS2|tRNA-SER HGNC:16293|MIM:189910 6 6p21.3 transfer RNA serine 2 (anticodon AGA) tRNA TRNAS2 transfer RNA serine 2 (anticodon AGA) O - 20121230 -9606 23438 HARS2 - HARSL|HARSR|HO3|PRLTS2 HGNC:4817|MIM:600783|Ensembl:ENSG00000112855|HPRD:02871|Vega:OTTHUMG00000129500 5 5q31.3 histidyl-tRNA synthetase 2, mitochondrial protein-coding HARS2 histidyl-tRNA synthetase 2, mitochondrial O HARS-related|hisRS|histidine tRNA ligase 2, mitochondrial (putative)|histidine translase|histidine-tRNA ligase homolog|histidyl-tRNA synthetase 2, mitochondrial (putative)|probable histidine--tRNA ligase, mitochondrial|probable histidyl-tRNA synthetase, mitochondrial 20121230 -9606 23439 ATP1B4 - - HGNC:808|Ensembl:ENSG00000101892|HPRD:06453|Vega:OTTHUMG00000022299 X Xq24 ATPase, Na+/K+ transporting, beta 4 polypeptide protein-coding ATP1B4 ATPase, Na+/K+ transporting, beta 4 polypeptide O Na,K-ATPase beta m-subunit|X,K-ATPase beta-m subunit|protein ATP1B4|x/potassium-transporting ATPase subunit beta-m 20121230 -9606 23440 OTP - - HGNC:8518|MIM:604529|Ensembl:ENSG00000171540|HPRD:05166|Vega:OTTHUMG00000102171 5 5q13.3 orthopedia homeobox protein-coding OTP orthopedia homeobox O homeobox protein orthopedia|orthopedia homolog 20121230 -9606 23443 SLC35A3 - - HGNC:11023|MIM:605632|Ensembl:ENSG00000117620|HPRD:10413|Vega:OTTHUMG00000010805 1 1p21 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 protein-coding SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 O UDP-N-acetylglucosamine transporter|golgi UDP-GlcNAc transporter|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3|solute carrier family 35 member A3 20121230 -9606 23444 CDW12 - p90-120 - - - CDw12 antigen protein-coding - - - - 20100404 -9606 23446 SLC44A1 - CD92|CDW92|CHTL1|CTL1|RP11-287A8.1 HGNC:18798|MIM:606105|Ensembl:ENSG00000070214|HPRD:16197|Vega:OTTHUMG00000020421 9 9q31.2 solute carrier family 44, member 1 protein-coding SLC44A1 solute carrier family 44, member 1 O CDW92 antigen|choline transporter-like protein 1 20121230 -9606 23447 CDW93 - - - - - CDw93 antigen protein-coding - - - - 20100404 -9606 23448 CD139 - - - - - CD139 antigen protein-coding - - - - 20100404 -9606 23449 CD165 - - - - - CD165 antigen protein-coding - - - - 20100404 -9606 23450 SF3B3 - RSE1|SAP130|SF3b130|STAF130 HGNC:10770|MIM:605592|Ensembl:ENSG00000189091|HPRD:12027|Vega:OTTHUMG00000137582 16 16q22.1 splicing factor 3b, subunit 3, 130kDa protein-coding SF3B3 splicing factor 3b, subunit 3, 130kDa O SAP 130|pre-mRNA splicing factor SF3b, 130 kDa subunit|pre-mRNA-splicing factor SF3b 130 kDa subunit|spliceosome-associated protein 130|splicing factor 3B subunit 3 20121230 -9606 23451 SF3B1 - Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 HGNC:10768|MIM:605590|Ensembl:ENSG00000115524|HPRD:09281|Vega:OTTHUMG00000154447 2 2q33.1 splicing factor 3b, subunit 1, 155kDa protein-coding SF3B1 splicing factor 3b, subunit 1, 155kDa O SAP 155|pre-mRNA processing 10|pre-mRNA splicing factor SF3b, 155 kDa subunit|spliceosome-associated protein 155|splicing factor 3B subunit 1 20121230 -9606 23452 ANGPTL2 RP11-1M19.1 ARP2|HARP HGNC:490|MIM:605001|Ensembl:ENSG00000136859|HPRD:05415|Vega:OTTHUMG00000020695 9 9q34 angiopoietin-like 2 protein-coding ANGPTL2 angiopoietin-like 2 O angiopoietin-like protein 2|angiopoietin-related protein 2 20121230 -9606 23456 ABCB10 - EST20237|M-ABC2|MTABC2 HGNC:41|MIM:605454|Ensembl:ENSG00000135776|HPRD:09263|Vega:OTTHUMG00000039471 1 1q42.13 ATP-binding cassette, sub-family B (MDR/TAP), member 10 protein-coding ABCB10 ATP-binding cassette, sub-family B (MDR/TAP), member 10 O ABC transporter 10 protein|ATP-binding cassette sub-family B member 10, mitochondrial|ATP-binding cassette transporter 10|mitochondrial ATP-binding cassette 2 20121230 -9606 23457 ABCB9 - EST122234|TAPL HGNC:50|MIM:605453|Ensembl:ENSG00000150967|HPRD:09262|Vega:OTTHUMG00000168769 12 12q24 ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein-coding ABCB9 ATP-binding cassette, sub-family B (MDR/TAP), member 9 O ABC transporter 9 protein|ATP-binding cassette sub-family B member 9|TAP-like protein 20121230 -9606 23459 CMD1H - - HGNC:2108|MIM:604288 2 2q14-q22 cardiomyopathy, dilated 1H (autosomal dominant) unknown CMD1H cardiomyopathy, dilated 1H (autosomal dominant) O - 20120622 -9606 23460 ABCA6 - EST155051 HGNC:36|MIM:612504|Ensembl:ENSG00000154262|HPRD:10622|Vega:OTTHUMG00000180258 17 17q24.3 ATP-binding cassette, sub-family A (ABC1), member 6 protein-coding ABCA6 ATP-binding cassette, sub-family A (ABC1), member 6 O ABC transporter ABCA6|ATP-binding cassette A6|ATP-binding cassette sub-family A member 6 20121230 -9606 23461 ABCA5 - ABC13|EST90625 HGNC:35|MIM:612503|Ensembl:ENSG00000154265|HPRD:09789|Vega:OTTHUMG00000180303 17 17q24.3 ATP-binding cassette, sub-family A (ABC1), member 5 protein-coding ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 O ATP-binding cassette A5|ATP-binding cassette sub-family A member 5 20121230 -9606 23462 HEY1 - BHLHb31|CHF2|HERP2|HESR1|HRT-1|OAF1 HGNC:4880|MIM:602953|Ensembl:ENSG00000164683|HPRD:04260|Vega:OTTHUMG00000164641 8 8q21 hairy/enhancer-of-split related with YRPW motif 1 protein-coding HEY1 hairy/enhancer-of-split related with YRPW motif 1 O HES-related repressor protein 1|HES-related repressor protein 2|basic helix-loop-helix protein OAF1|cardiovascular helix-loop-helix factor 2|class B basic helix-loop-helix protein 31|hHRT1|hairy and enhancer of split-related protein 1|hairy-related transcription factor 1|hairy/enhancer-of-split related with YRPW motif protein 1 20121230 -9606 23463 ICMT RP1-120G22.4 HSTE14|MST098|MSTP098|PCCMT|PCMT|PPMT HGNC:5350|MIM:605851|Ensembl:ENSG00000116237|HPRD:09321|Vega:OTTHUMG00000001254 1 1p36.21 isoprenylcysteine carboxyl methyltransferase protein-coding ICMT isoprenylcysteine carboxyl methyltransferase O prenylated protein carboxyl methyltransferase|prenylcysteine carboxyl methyltransferase|protein-S isoprenylcysteine O-methyltransferase|protein-S-isoprenylcysteine O-methyltransferase 20121230 -9606 23464 GCAT - KBL HGNC:4188|MIM:607422|Ensembl:ENSG00000100116|HPRD:07602|Vega:OTTHUMG00000150664 22 22q13.1 glycine C-acetyltransferase protein-coding GCAT glycine C-acetyltransferase O 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial|2-amino-3-ketobutyrate-CoA ligase|AKB ligase|aminoacetone synthase|glycine acetyltransferase 20121230 -9606 23466 CBX6 RP3-327J16.5 - HGNC:1556|Ensembl:ENSG00000183741|HPRD:13005|Vega:OTTHUMG00000150456 22 22q13.1 chromobox homolog 6 protein-coding CBX6 chromobox homolog 6 O chromobox protein homolog 6 20121230 -9606 23467 NPTXR - NPR HGNC:7954|MIM:609474|Ensembl:ENSG00000221890|HPRD:14837|Vega:OTTHUMG00000150458 22 22q13.1 neuronal pentraxin receptor protein-coding NPTXR neuronal pentraxin receptor O - 20121230 -9606 23468 CBX5 - HP1|HP1A HGNC:1555|MIM:604478|Ensembl:ENSG00000094916|HPRD:05131|Vega:OTTHUMG00000169700 12 12q13.13 chromobox homolog 5 protein-coding CBX5 chromobox homolog 5 O HP1 alpha homolog|HP1-ALPHA|HP1Hs alpha|antigen p25|chromobox homolog 5 (HP1 alpha homolog, Drosophila)|chromobox protein homolog 5|heterochromatin protein 1 homolog alpha|heterochromatin protein 1-alpha 20121230 -9606 23469 PHF3 RP1-22I17.3 - HGNC:8921|MIM:607789|Ensembl:ENSG00000118482|HPRD:08477|Vega:OTTHUMG00000014952 6 6q12 PHD finger protein 3 protein-coding PHF3 PHD finger protein 3 O - 20121230 -9606 23471 TRAM1 - PNAS8|TRAM|TRAMP HGNC:20568|MIM:605190|Ensembl:ENSG00000067167|HPRD:05545|Vega:OTTHUMG00000164428 8 8q13.3 translocation associated membrane protein 1 protein-coding TRAM1 translocation associated membrane protein 1 O translocating chain-associated membrane protein 1|translocating chain-associating membrane protein|translocation-associating membrane protein 1 20121230 -9606 23473 CAPN7 - CALPAIN7|PALBH HGNC:1484|MIM:606400|Ensembl:ENSG00000131375|HPRD:05908|Vega:OTTHUMG00000129863 3 3p24 calpain 7 protein-coding CAPN7 calpain 7 O calpain like protease|calpain-7|homolog of Aspergillus Nidulans PALB|palB homolog 20121230 -9606 23474 ETHE1 - HSCO|YF13H12 HGNC:23287|MIM:608451|Ensembl:ENSG00000105755|HPRD:09764 19 19q13.31 ethylmalonic encephalopathy 1 protein-coding ETHE1 ethylmalonic encephalopathy 1 O ethylmalonic encephalopathy protein 1|hepatoma subtracted clone one protein|protein ETHE1, mitochondrial 20121230 -9606 23475 QPRT - QPRTase HGNC:9755|MIM:606248|Ensembl:ENSG00000103485|HPRD:06950|Vega:OTTHUMG00000097770 16 16p11.2 quinolinate phosphoribosyltransferase protein-coding QPRT quinolinate phosphoribosyltransferase O QAPRTase|nicotinate-nucleotide pyrophosphorylase (carboxylating)|nicotinate-nucleotide pyrophosphorylase [carboxylating] 20121230 -9606 23476 BRD4 - CAP|HUNK1|HUNKI|MCAP HGNC:13575|MIM:608749|Ensembl:ENSG00000141867|HPRD:10574 19 19p13.1 bromodomain containing 4 protein-coding BRD4 bromodomain containing 4 O bromodomain-containing 4|bromodomain-containing protein 4|chromosome-associated protein 20121230 -9606 23478 SEC11A - 1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895 HGNC:17718|Ensembl:ENSG00000140612|HPRD:07503|Vega:OTTHUMG00000172489 15 15q25.3 SEC11 homolog A (S. cerevisiae) protein-coding SEC11A SEC11 homolog A (S. cerevisiae) O SEC11-like protein 1|SPase 18 kDa subunit|endopeptidase SP18|microsomal signal peptidase 18 kDa subunit|signal peptidase complex (18kD)|signal peptidase complex catalytic subunit SEC11A 20121230 -9606 23479 ISCU - 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU HGNC:29882|MIM:611911|Ensembl:ENSG00000136003|HPRD:14828|Vega:OTTHUMG00000168420 12 12q24.1 iron-sulfur cluster scaffold homolog (E. coli) protein-coding ISCU iron-sulfur cluster scaffold homolog (E. coli) O IscU iron-sulfur cluster scaffold homolog|NifU-like N-terminal domain containing|iron-sulfur cluster assembly enzyme ISCU, mitochondrial|nifU-like N-terminal domain-containing protein|nifU-like protein 20121230 -9606 23480 SEC61G - SSS1 HGNC:18277|MIM:609215|Ensembl:ENSG00000132432|HPRD:15318|Vega:OTTHUMG00000023430 7 7p11.2 Sec61 gamma subunit protein-coding SEC61G Sec61 gamma subunit O protein transport protein SEC61 gamma subunit|protein transport protein Sec61 subunit gamma 20121230 -9606 23481 PES1 - PES HGNC:8848|MIM:605819|Ensembl:ENSG00000100029|HPRD:05783|Vega:OTTHUMG00000151077 22 22q12.1 pescadillo ribosomal biogenesis factor 1 protein-coding PES1 pescadillo ribosomal biogenesis factor 1 O pescadillo homolog|pescadillo homolog 1, containing BRCT domain 20121230 -9606 23483 TGDS RP11-124B17.2 SDR2E1|TDPGD HGNC:20324|Ensembl:ENSG00000088451|HPRD:15494|Vega:OTTHUMG00000046308 13 13q32.1 TDP-glucose 4,6-dehydratase protein-coding TGDS TDP-glucose 4,6-dehydratase O dTDP-D-glucose 4,6-dehydratase|growth-inhibiting protein 21|short chain dehydrogenase/reductase family 2E, member 1 20121230 -9606 23484 LEPROTL1 My047 HSPC112|Vps55|my047 HGNC:6555|MIM:607338|Ensembl:ENSG00000104660|HPRD:09551|Vega:OTTHUMG00000163820 8 8p21 leptin receptor overlapping transcript-like 1 protein-coding LEPROTL1 leptin receptor overlapping transcript-like 1 O - 20121230 -9606 23491 CES3 UNQ869/PRO1887 ES31 HGNC:1865|MIM:605279|Ensembl:ENSG00000172828|HPRD:07014|Vega:OTTHUMG00000137525 16 16q22.1 carboxylesterase 3 protein-coding CES3 carboxylesterase 3 O carboxylesterase 3 (brain)|esterase 31|liver carboxylesterase 31 homolog 20121230 -9606 23492 CBX7 RP4-742C19.7 - HGNC:1557|MIM:608457|Ensembl:ENSG00000100307|HPRD:12234|Vega:OTTHUMG00000150418 22 22q13.1 chromobox homolog 7 protein-coding CBX7 chromobox homolog 7 O chromobox protein homolog 7 20121230 -9606 23493 HEY2 RP1-293L8.3 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 HGNC:4881|MIM:604674|Ensembl:ENSG00000135547|HPRD:05243|Vega:OTTHUMG00000015512 6 6q21 hairy/enhancer-of-split related with YRPW motif 2 protein-coding HEY2 hairy/enhancer-of-split related with YRPW motif 2 O HES-related repressor protein 1|HES-related repressor protein 2|HESR-2|HRT-2|cardiovascular basic helix-loop-helix factor 1|cardiovascular helix-loop-helix factor 1|class B basic helix-loop-helix protein 32|hCHF1|hHRT2|hairy and enhancer of split-related protein 2|hairy-related transcription factor 2|hairy/enhancer-of-split related with YRPW motif protein 2|protein gridlock homolog 20121230 -9606 23495 TNFRSF13B - CD267|CVID|CVID2|TACI|TNFRSF14B HGNC:18153|MIM:604907|Ensembl:ENSG00000240505|HPRD:05365|Vega:OTTHUMG00000059262 17 17p11.2 tumor necrosis factor receptor superfamily, member 13B protein-coding TNFRSF13B tumor necrosis factor receptor superfamily, member 13B O transmembrane activator and CAML interactor|tumor necrosis factor receptor 13B|tumor necrosis factor receptor superfamily member 13B 20121230 -9606 23498 HAAO - 3-HAO|HAO HGNC:4796|MIM:604521|Ensembl:ENSG00000162882|HPRD:05158|Vega:OTTHUMG00000152348 2 2p21 3-hydroxyanthranilate 3,4-dioxygenase protein-coding HAAO 3-hydroxyanthranilate 3,4-dioxygenase O 3-hydroxyanthranilate oxygenase|3-hydroxyanthranilic acid dioxygenase|HAD 20121230 -9606 23499 MACF1 - ABP620|ACF7|MACF|OFC4 HGNC:13664|MIM:608271|Ensembl:ENSG00000127603|HPRD:09750|Vega:OTTHUMG00000007754 1 1p32-p31 microtubule-actin crosslinking factor 1 protein-coding MACF1 microtubule-actin crosslinking factor 1 O 620 kDa actin binding protein|actin cross-linking family protein 7|macrophin 1|microtubule-actin cross-linking factor 1|trabeculin-alpha 20121230 -9606 23500 DAAM2 RP1-278E11.1 dJ90A20A.1 HGNC:18143|MIM:606627|Ensembl:ENSG00000146122|HPRD:09434|Vega:OTTHUMG00000014653 6 6p21.2 dishevelled associated activator of morphogenesis 2 protein-coding DAAM2 dishevelled associated activator of morphogenesis 2 O disheveled-associated activator of morphogenesis 2|dishevelled-associated activator of morphogenesis 2 20121230 -9606 23503 ZFYVE26 - FYVE-CENT|SPG15 HGNC:20761|MIM:612012|Ensembl:ENSG00000072121|HPRD:15734|Vega:OTTHUMG00000171274 14 14q24.1 zinc finger, FYVE domain containing 26 protein-coding ZFYVE26 zinc finger, FYVE domain containing 26 O FYVE domain-containing centrosomal protein|spastizin|zinc finger FYVE domain-containing protein 26 20121230 -9606 23504 RIMBP2 - RBP2|RIM-BP2 HGNC:30339|MIM:611602|Ensembl:ENSG00000060709|HPRD:17183|Vega:OTTHUMG00000168385 12 12q24.33 RIMS binding protein 2 protein-coding RIMBP2 RIMS binding protein 2 O RIM binding protein 2|RIMS-binding protein 2 20121230 -9606 23505 TMEM131 - CC28|PRO1048|RW1|YR-23 HGNC:30366|Ensembl:ENSG00000075568|Vega:OTTHUMG00000153061 2 2q11.2 transmembrane protein 131 protein-coding TMEM131 transmembrane protein 131 O 2610524E03Rik 20121230 -9606 23506 GLTSCR1L - KIAA0240 HGNC:21111|Ensembl:ENSG00000112624|HPRD:17180|Vega:OTTHUMG00000014706 6 6p21.1 GLTSCR1-like protein-coding GLTSCR1L GLTSCR1-like O uncharacterized protein KIAA0240 20121230 -9606 23507 LRRC8B UNQ6413/PRO21207 TA-LRRP|TALRRP HGNC:30692|MIM:612888|Ensembl:ENSG00000197147|HPRD:18145|Vega:OTTHUMG00000010129 1 1p22.2 leucine rich repeat containing 8 family, member B protein-coding LRRC8B leucine rich repeat containing 8 family, member B O T cell activation leucine repeat rich protein|T-cell activation leucine repeat-rich protein|leucine-rich repeat-containing protein 8B 20121230 -9606 23508 TTC9 - TTC9A HGNC:20267|MIM:610488|Ensembl:ENSG00000133985|Vega:OTTHUMG00000172133 14 14q24.2 tetratricopeptide repeat domain 9 protein-coding TTC9 tetratricopeptide repeat domain 9 O TPR repeat protein 9A|tetratricopeptide repeat protein 9A 20121230 -9606 23509 POFUT1 - FUT12|O-FUT|O-Fuc-T|O-FucT-1 HGNC:14988|MIM:607491|Ensembl:ENSG00000101346|HPRD:06319|Vega:OTTHUMG00000133268 20 20q11 protein O-fucosyltransferase 1 protein-coding POFUT1 protein O-fucosyltransferase 1 O GDP-fucose protein O-fucosyltransferase 1|o-fucosyltransferase protein|peptide-O-fucosyltransferase 1 20121230 -9606 23510 KCTD2 - - HGNC:21294|MIM:613422|Ensembl:ENSG00000180901|HPRD:17176|Vega:OTTHUMG00000179276 17 17q25.1 potassium channel tetramerisation domain containing 2 protein-coding KCTD2 potassium channel tetramerisation domain containing 2 O BTB/POZ domain-containing protein KCTD2|potassium channel tetramerization domain-containing protein 2 20121230 -9606 23511 NUP188 RP11-167N5.2 KIAA0169 HGNC:17859|Ensembl:ENSG00000095319|HPRD:18582|Vega:OTTHUMG00000020768 9 9q34.11 nucleoporin 188kDa protein-coding NUP188 nucleoporin 188kDa O hNup188|nucleoporin NUP188 homolog 20121230 -9606 23512 SUZ12 - CHET9|JJAZ1 HGNC:17101|MIM:606245|Ensembl:ENSG00000178691|HPRD:06949|Vega:OTTHUMG00000132813 17 17q11.2 suppressor of zeste 12 homolog (Drosophila) protein-coding SUZ12 suppressor of zeste 12 homolog (Drosophila) O chET 9 protein|chromatin precipitated E2F target 9 protein|joined to JAZF1 protein|polycomb protein SUZ12|suppressor of zeste 12 protein homolog 20121230 -9606 23513 SCRIB - CRIB1|SCRB1|SCRIB1|Vartul HGNC:30377|MIM:607733|Ensembl:ENSG00000180900|HPRD:06984|Vega:OTTHUMG00000165154 8 8q24.3 scribbled homolog (Drosophila) protein-coding SCRIB scribbled homolog (Drosophila) O protein scribble homolog 20121230 -9606 23514 KIAA0146 - - HGNC:28971|Ensembl:ENSG00000164808|Vega:OTTHUMG00000164176 8 8q11.21 KIAA0146 protein-coding KIAA0146 KIAA0146 O uncharacterized protein KIAA0146 20121230 -9606 23515 MORC3 - NXP2|ZCW5|ZCWCC3 HGNC:23572|MIM:610078|Ensembl:ENSG00000159256|HPRD:10316|Vega:OTTHUMG00000086620 21 21q22.13 MORC family CW-type zinc finger 3 protein-coding MORC3 MORC family CW-type zinc finger 3 O MORC family CW-type zinc finger protein 3|nuclear matrix protein NXP2|zinc finger CW-type coiled-coil domain protein 3|zinc finger, CW type with coiled-coil domain 3|zinc finger, CW-type with coiled-coil domain 3 20121230 -9606 23516 SLC39A14 - LZT-Hs4|NET34|ZIP14|cig19 HGNC:20858|MIM:608736|Ensembl:ENSG00000104635|HPRD:12288|Vega:OTTHUMG00000097791 8 8p21.3 solute carrier family 39 (zinc transporter), member 14 protein-coding SLC39A14 solute carrier family 39 (zinc transporter), member 14 O LIV-1 subfamily of ZIP zinc transporter 4|ZIP-14|Zrt-, Irt-like protein 14|solute carrier family 39 (metal ion transporter), member 14|solute carrier family 39 member 14|zinc transporter ZIP14|zrt- and Irt-like protein 14 20121230 -9606 23517 SKIV2L2 - Dob1|KIAA0052|Mtr4|fSAP118 HGNC:18734|Ensembl:ENSG00000039123|HPRD:13777|Vega:OTTHUMG00000097019 5 5q11.2 superkiller viralicidic activity 2-like 2 (S. cerevisiae) protein-coding SKIV2L2 superkiller viralicidic activity 2-like 2 (S. cerevisiae) O ATP-dependent helicase SKIV2L2|functional spliceosome-associated protein 118|superkiller viralicidic activity 2-like 2 20121230 -9606 23518 R3HDM1 - R3HDM HGNC:9757|Ensembl:ENSG00000048991|HPRD:10180|Vega:OTTHUMG00000131740 2 2q21.3 R3H domain containing 1 protein-coding R3HDM1 R3H domain containing 1 O R3H domain (binds single-stranded nucleic acids) containing|R3H domain-containing protein 1 20121230 -9606 23519 ANP32D - PP32R2 HGNC:16676|MIM:606878|Ensembl:ENSG00000139223|HPRD:06046|Vega:OTTHUMG00000162681 12 12q13.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member D protein-coding ANP32D acidic (leucine-rich) nuclear phosphoprotein 32 family, member D O acidic leucine-rich nuclear phosphoprotein 32 family member D|acidic nuclear phosphoprotein 32D|phosphoprotein 32-related protein 2|pp32 related 2|tumorigenic protein pp32r2 20121230 -9606 23520 ANP32C - PP32R1 HGNC:16675|MIM:606877|HPRD:06045 4 4q32.3 acidic (leucine-rich) nuclear phosphoprotein 32 family, member C protein-coding ANP32C acidic (leucine-rich) nuclear phosphoprotein 32 family, member C O acidic leucine-rich nuclear phosphoprotein 32 family member C|phosphoprotein 32-related protein 1|pp32 related 1|tumorigenic protein pp32r1 20121230 -9606 23521 RPL13A - L13A|TSTA1 HGNC:10304|Ensembl:ENSG00000142541|HPRD:11775|Vega:OTTHUMG00000134289 19 19q13.3 ribosomal protein L13a protein-coding RPL13A ribosomal protein L13a O 23 kDa highly basic protein|60S ribosomal protein L13a|tissue specific transplantation antigen 1 20121230 -9606 23522 KAT6B - GTPTS|MORF|MOZ2|MYST4|qkf|querkopf HGNC:17582|MIM:605880|Ensembl:ENSG00000156650|HPRD:07065|Vega:OTTHUMG00000018509 10 10q22.2 K(lysine) acetyltransferase 6B protein-coding KAT6B K(lysine) acetyltransferase 6B O MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4|MOZ-related factor|MYST histone acetyltransferase (monocytic leukemia) 4|MYST-4|histone acetyltransferase KAT6B|histone acetyltransferase MORF|histone acetyltransferase MOZ2|histone acetyltransferase MYST4|monocytic leukemia zinc finger protein-related factor 20121230 -9606 23523 CABIN1 - CAIN|PPP3IN HGNC:24187|MIM:604251|Ensembl:ENSG00000099991|HPRD:10369|Vega:OTTHUMG00000150797 22 22q11.23 calcineurin binding protein 1 protein-coding CABIN1 calcineurin binding protein 1 O calcineurin binding protein cabin 1|calcineurin inhibitor|calcineurin-binding protein cabin-1 20121230 -9606 23524 SRRM2 HSPC075 300-KD|CWF21|Cwc21|SRL300|SRm300 HGNC:16639|MIM:606032|Ensembl:ENSG00000167978|HPRD:06913|Vega:OTTHUMG00000177358 16 16p13.3 serine/arginine repetitive matrix 2 protein-coding SRRM2 serine/arginine repetitive matrix 2 O 300 kDa nuclear matrix antigen|RNA binding protein|SR-related nuclear matrix protein of 300 kDa|ser/Arg-related nuclear matrix protein of 300 kDa|serine/arginine repetitive matrix protein 2|serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa|splicing coactivator subunit SRm300|tax-responsive enhancer element-binding protein 803|taxREB803 20121230 -9606 23526 HMHA1 - ARHGAP45|HA-1|HLA-HA1 HGNC:17102|MIM:601155|Ensembl:ENSG00000180448|HPRD:03097|Vega:OTTHUMG00000181871 19 19p13.3 histocompatibility (minor) HA-1 protein-coding HMHA1 histocompatibility (minor) HA-1 O minor histocompatibility antigen HA-1|minor histocompatibility protein HA-1 20121230 -9606 23527 ACAP2 - CENTB2|CNT-B2 HGNC:16469|MIM:607766|Ensembl:ENSG00000114331|HPRD:09681|Vega:OTTHUMG00000155885 3 3q29 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 O Arf GAP with coiled coil, ANK repeat and PH domains 2|arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2|centaurin, beta 2|centaurin-beta-2 20121230 -9606 23528 ZNF281 - ZBP-99|ZNP-99 HGNC:13075|Ensembl:ENSG00000162702|HPRD:11702|Vega:OTTHUMG00000035724 1 1q32.1 zinc finger protein 281 protein-coding ZNF281 zinc finger protein 281 O GC-box-binding zinc finger protein 1|ZNP-99 transcription factor|transcription factor ZBP-99|zinc finger DNA-binding protein 99 20121230 -9606 23529 CLCF1 - BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 HGNC:17412|MIM:607672|Ensembl:ENSG00000175505|HPRD:09643|Vega:OTTHUMG00000167669 11 11q13.3 cardiotrophin-like cytokine factor 1 protein-coding CLCF1 cardiotrophin-like cytokine factor 1 O B-cell stimulating factor 3|B-cell stimulatory factor 3|B-cell-stimulating factor 3|CRLF1 associated cytokine-like factor 1|neurotrophin-1/B-cell stimulating factor-3|novel neurotrophin-1 20121230 -9606 23530 NNT hCG_17428 GCCD4 HGNC:7863|MIM:607878|Ensembl:ENSG00000112992|HPRD:09715|Vega:OTTHUMG00000096961 5 5p12 nicotinamide nucleotide transhydrogenase protein-coding NNT nicotinamide nucleotide transhydrogenase O NAD(P) transhydrogenase, mitochondrial|pyridine nucleotide transhydrogenase 20121230 -9606 23531 MMD - MMA|MMD1|PAQR11 HGNC:7153|MIM:604467|Ensembl:ENSG00000108960|HPRD:06835|Vega:OTTHUMG00000177845 17 17q monocyte to macrophage differentiation-associated protein-coding MMD monocyte to macrophage differentiation-associated O macrophage maturation-associated|monocyte to macrophage differentiation protein|progestin and adipoQ receptor family member 11|progestin and adipoQ receptor family member XI 20121230 -9606 23532 PRAME - CT130|MAPE|OIP-4|OIP4 HGNC:9336|MIM:606021|Ensembl:ENSG00000185686|HPRD:05820|Vega:OTTHUMG00000151172 22 22q11.22 preferentially expressed antigen in melanoma protein-coding PRAME preferentially expressed antigen in melanoma O Opa-interacting protein OIP4|cancer/testis antigen 130|melanoma antigen preferentially expressed in tumors|opa-interacting protein 4|preferentially expressed antigen of melanoma 20121230 -9606 23533 PIK3R5 - F730038I15Rik|FOAP-2|P101-PI3K|p101 HGNC:30035|MIM:611317|Ensembl:ENSG00000141506|HPRD:11433|Vega:OTTHUMG00000108197 17 17p13.1 phosphoinositide-3-kinase, regulatory subunit 5 protein-coding PIK3R5 phosphoinositide-3-kinase, regulatory subunit 5 O PI3-kinase p101 subunit|phosphatidylinositol 4,5-bisphosphate 3-kinase regulatory subunit|phosphatidylinositol-4,5-bisphosphate 3-kinase regulatory subunit|phosphoinositide 3-kinase regulatory subunit 5|protein FOAP-2|ptdIns-3-kinase p101 20121230 -9606 23534 TNPO3 - IPO12|MTR10A|TRN-SR|TRN-SR2|TRNSR HGNC:17103|MIM:610032|Ensembl:ENSG00000064419|HPRD:18209|Vega:OTTHUMG00000158409 7 7q32.1 transportin 3 protein-coding TNPO3 transportin 3 O imp12|importin 12|transportin-3|transportin-SR 20121230 -9606 23536 ADAT1 - HADAT1 HGNC:228|MIM:604230|Ensembl:ENSG00000065457|HPRD:11970|Vega:OTTHUMG00000137611 16 16q23.1 adenosine deaminase, tRNA-specific 1 protein-coding ADAT1 adenosine deaminase, tRNA-specific 1 O adenosine deaminase acting on tRNA|tRNA-specific adenosine deaminase 1|tRNA-specific adenosine-37 deaminase 20121230 -9606 23538 OR52A1 - HPFH1OR HGNC:8318|Ensembl:ENSG00000182070|HPRD:17742 11 11p15.5 olfactory receptor, family 52, subfamily A, member 1 protein-coding OR52A1 olfactory receptor, family 52, subfamily A, member 1 O odorant receptor HOR3'beta4|olfactory receptor 52A1|olfactory receptor OR11-319 20121230 -9606 23539 SLC16A8 RP5-1039K5.14-003 MCT3|REMP HGNC:16270|MIM:610409|Ensembl:ENSG00000100156|HPRD:11568|Vega:OTTHUMG00000151196 22 22q12.3-q13.2 solute carrier family 16, member 8 (monocarboxylic acid transporter 3) protein-coding SLC16A8 solute carrier family 16, member 8 (monocarboxylic acid transporter 3) O MCT 3|monocarboxylate transporter 3|solute carrier 16 (monocarboxylic acid transporters), member 8|solute carrier family 16 member 8 20121230 -9606 23540 TRNAS3 - TRS3 HGNC:16294|MIM:606172 6 6p22.1 transfer RNA serine 3 (anticodon UGA) tRNA TRNAS3 transfer RNA serine 3 (anticodon UGA) O - 20121230 -9606 23541 SEC14L2 - C22orf6|SPF|TAP|TAP1 HGNC:10699|MIM:607558|Ensembl:ENSG00000100003|HPRD:06344|Vega:OTTHUMG00000151024 22 22q12.2 SEC14-like 2 (S. cerevisiae) protein-coding SEC14L2 SEC14-like 2 (S. cerevisiae) O SEC14-like protein 2|alpha-tocopherol-associated protein|squalene transfer protein|supernatant protein factor|tocopherol-associated protein 20121230 -9606 23542 MAPK8IP2 - IB2|JIP2|PRKM8IPL HGNC:6883|MIM:607755|Ensembl:ENSG00000008735|HPRD:09674|Vega:OTTHUMG00000150181 22 22q13.33 mitogen-activated protein kinase 8 interacting protein 2 protein-coding MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 O C-Jun-amino-terminal kinase-interacting protein 2|IB-2|JNK MAP kinase scaffold protein 2|JNK MAP kinase scaffold protein JIP2|JNK-interacting protein 2|homologous to mouse JIP-1|islet-brain 2 20121230 -9606 23543 RBFOX2 RP1-41P2.9 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh HGNC:9906|MIM:612149|Ensembl:ENSG00000100320|HPRD:15231|Vega:OTTHUMG00000150585 22 22q13.1 RNA binding protein, fox-1 homolog (C. elegans) 2 protein-coding RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 O RNA binding protein fox-1 homolog 2|RNA-binding motif protein 9|fox-1 homolog B|fox-1 homologue|hexaribonucleotide-binding protein 2|repressor of tamoxifen transcriptional activity 20121230 -9606 23544 SEZ6L RP3-341O5.1 - HGNC:10763|MIM:607021|Ensembl:ENSG00000100095|HPRD:08449|Vega:OTTHUMG00000150870 22 22q12.1 seizure related 6 homolog (mouse)-like protein-coding SEZ6L seizure related 6 homolog (mouse)-like O seizure 6-like protein|seizure related gene 6-like 20121230 -9606 23545 ATP6V0A2 - A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS HGNC:18481|MIM:611716|Ensembl:ENSG00000185344|HPRD:16521|Vega:OTTHUMG00000168723 12 12q24.31 ATPase, H+ transporting, lysosomal V0 subunit a2 protein-coding ATP6V0A2 ATPase, H+ transporting, lysosomal V0 subunit a2 O A2V-ATPase|V-type proton ATPase 116 kDa subunit a isoform 2|lysosomal H(+)-transporting ATPase V0 subunit a2|regeneration and tolerance factor|v-ATPase 116 kDa|v-type proton ATPase 116 kDa subunit a|vacuolar proton translocating ATPase 116 kDa subunit a 20121230 -9606 23546 SYNGR4 - - HGNC:11502|MIM:608373|Ensembl:ENSG00000105467|HPRD:10520 19 19q13.3 synaptogyrin 4 protein-coding SYNGR4 synaptogyrin 4 O synaptogyrin-4 20121230 -9606 23547 LILRA4 XXbac-BCX403H19.3 CD85g|ILT7 HGNC:15503|MIM:607517|Ensembl:ENSG00000239961|HPRD:09596|Vega:OTTHUMG00000065355 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4 protein-coding LILRA4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4 O CD85 antigen-like family member G|ILT-7|immunoglobulin-like transcript 7|leukocyte immunoglobulin-like receptor subfamily A member 4|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4 20121230 -9606 23548 TTC33 - OSRF HGNC:29959|Ensembl:ENSG00000113638|HPRD:17807|Vega:OTTHUMG00000131142 5 5p13.1 tetratricopeptide repeat domain 33 protein-coding TTC33 tetratricopeptide repeat domain 33 O TPR repeat protein 33|osmosis responsive factor|osmosis-responsive factor|tetratricopeptide repeat protein 33 20121230 -9606 23549 DNPEP - ASPEP|DAP HGNC:2981|MIM:611367|Ensembl:ENSG00000123992|HPRD:09924|Vega:OTTHUMG00000058919 2 2q35 aspartyl aminopeptidase protein-coding DNPEP aspartyl aminopeptidase O - 20121230 -9606 23550 PSD4 - EFA6B|TIC HGNC:19096|MIM:614442|Ensembl:ENSG00000125637|HPRD:15191|Vega:OTTHUMG00000153339 2 2q13 pleckstrin and Sec7 domain containing 4 protein-coding PSD4 pleckstrin and Sec7 domain containing 4 O ADP-ribosylation factor guanine nucleotide-exchange factor 6|PH and SEC7 domain-containing protein 4|SEC7 homolog|exchange factor for ADP-ribosylation factor guanine nucleotide factor 6 B|exchange factor for ADP-ribosylation factor guanine nucleotide factor 6B|exchange factor for ARF6 B|pleckstrin homology and SEC7 domain-containing protein 4|telomeric of interleukin-1 cluster protein 20121230 -9606 23551 RASD2 - MGC:4834|Rhes|TEM2 HGNC:18229|MIM:612842|Ensembl:ENSG00000100302|HPRD:15210|Vega:OTTHUMG00000150607 22 22q13.1 RASD family, member 2 protein-coding RASD2 RASD family, member 2 O GTP-binding protein Rhes|Ras homolog enriched in striatum|tumor endothelial marker 2 20121230 -9606 23552 CDK20 RP11-350E12.2 CCRK|CDCH|P42|PNQALRE HGNC:21420|MIM:610076|Ensembl:ENSG00000156345|HPRD:13010|Vega:OTTHUMG00000020161 9 9q22.1 cyclin-dependent kinase 20 protein-coding CDK20 cyclin-dependent kinase 20 O CAK-kinase p42|CDK-activating kinase p42|cell cycle-related kinase|cell division protein kinase 20|cyclin-dependent protein kinase H|cyclin-kinase-activating kinase p42 20121230 -9606 23553 HYAL4 - CSHY HGNC:5323|MIM:604510|Ensembl:ENSG00000106302|HPRD:05148|Vega:OTTHUMG00000157349 7 7q31.3 hyaluronoglucosaminidase 4 protein-coding HYAL4 hyaluronoglucosaminidase 4 O chondroitin sulfate endo-beta-N-acetylgalactosaminidase|chondroitin sulfate hydrolase|hyal-4|hyaluronidase 4|hyaluronidase-4|hyaluronoglucosaminidase-4 20121230 -9606 23554 TSPAN12 UNQ774/PRO1568 EVR5|NET-2|NET2|TM4SF12 HGNC:21641|MIM:613138|Ensembl:ENSG00000106025|HPRD:15509|Vega:OTTHUMG00000156980 7 7q31.31 tetraspanin 12 protein-coding TSPAN12 tetraspanin 12 O tetraspan NET-2|tetraspanin-12|transmembrane 4 superfamily member 12|tspan-12 20121230 -9606 23555 TSPAN15 UNQ677/PRO1311 2700063A19Rik|NET-7|NET7|TM4SF15 HGNC:23298|MIM:613140|Ensembl:ENSG00000099282|HPRD:15511|Vega:OTTHUMG00000018381 10 10q22.1 tetraspanin 15 protein-coding TSPAN15 tetraspanin 15 O tetraspan NET-7|tetraspanin-15|transmembrane 4 superfamily member 15|transmembrane 4 superfamily member tetraspan NET-7|tspan-15 20121230 -9606 23556 PIGN - MCAHS|MCAHS1|MCD4|MDC4|PIG-N HGNC:8967|MIM:606097|Ensembl:ENSG00000197563|HPRD:12085|Vega:OTTHUMG00000180098 18 18q21.33 phosphatidylinositol glycan anchor biosynthesis, class N protein-coding PIGN phosphatidylinositol glycan anchor biosynthesis, class N O GPI ethanolamine phosphate transferase 1|MCD4 homolog|phosphatidylinositol-glycan biosynthesis class N protein 20121230 -9606 23557 SNAPIN - BLOC1S7|SNAPAP HGNC:17145|MIM:607007|Ensembl:ENSG00000143553|HPRD:06111|Vega:OTTHUMG00000037086 1 1q21.3 SNAP-associated protein protein-coding SNAPIN SNAP-associated protein O BLOC-1 subunit 7|SNAP-25-binding protein|SNARE associated protein snapin|SNARE-associated protein Snapin|biogenesis of lysosomal organelles complex-1, subunit 7|biogenesis of lysosome-related organelles complex 1 subunit 7|synaptosomal-associated protein 25-binding protein 20121230 -9606 23558 WBP2 - WBP-2 HGNC:12738|MIM:606962|Ensembl:ENSG00000132471|HPRD:06097|Vega:OTTHUMG00000179896 17 17q25 WW domain binding protein 2 protein-coding WBP2 WW domain binding protein 2 O WW domain-binding protein 2 20121230 -9606 23559 WBP1 - WBP-1 HGNC:12737|MIM:606961|Ensembl:ENSG00000239779|HPRD:09510|Vega:OTTHUMG00000129958 2 2p12 WW domain binding protein 1 protein-coding WBP1 WW domain binding protein 1 O WW domain-binding protein 1 20121230 -9606 23560 GTPBP4 RP11-38M7.5 CRFG|NGB|NOG1 HGNC:21535|Ensembl:ENSG00000107937|HPRD:09976 10 10p15-p14 GTP binding protein 4 protein-coding GTPBP4 GTP binding protein 4 O G protein-binding protein CRFG|GTP-binding protein NGB|chronic renal failure gene protein|nucleolar GTP-binding protein 1 20121230 -9606 23562 CLDN14 UNQ777/PRO1571 DFNB29 HGNC:2035|MIM:605608|Ensembl:ENSG00000159261|HPRD:05727|Vega:OTTHUMG00000086638 21 21q22.3 claudin 14 protein-coding CLDN14 claudin 14 O claudin-14 20121230 -9606 23563 CHST5 - I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST HGNC:1973|MIM:604817|Ensembl:ENSG00000135702|HPRD:07059|Vega:OTTHUMG00000137610 16 16q22.3 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 protein-coding CHST5 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 O GST4-alpha|N-acetylglucosamine 6-O-sulfotransferase 3|carbohydrate sulfotransferase 5|galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 4-alpha|intestinal GlcNAc-6-sulfotransferase 20121230 -9606 23564 DDAH2 DADB-110M10.5 DDAH|DDAHII|G6a|NG30 HGNC:2716|MIM:604744|Ensembl:ENSG00000213722|HPRD:09204|Vega:OTTHUMG00000031212 6 6p21.3 dimethylarginine dimethylaminohydrolase 2 protein-coding DDAH2 dimethylarginine dimethylaminohydrolase 2 O DDAH-2|N(G),N(G)-dimethylarginine dimethylaminohydrolase 2|NG-dimethylarginine dimethylamino hydrolase homolog|S-phase protein|alternative name: NG30, G6a|dimethylargininase-2|dimethylarginine dimethylaminohydrolase II|protein G6a 20121230 -9606 23566 LPAR3 - EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 HGNC:14298|MIM:605106|Ensembl:ENSG00000171517|HPRD:05486 1 1p22.3 lysophosphatidic acid receptor 3 protein-coding LPAR3 lysophosphatidic acid receptor 3 O LPA receptor 3|LPA receptor EDG7|LPA-3|calcium-mobilizing lysophosphatidic acid receptor LP-A3|endothelial cell differentiation gene 7|endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 7|lysophosphatidic acid receptor Edg-7 20121230 -9606 23567 ZNF346 - JAZ|Zfp346 HGNC:16403|MIM:605308|Ensembl:ENSG00000113761|HPRD:05606|Vega:OTTHUMG00000130848 5 5q35.2 zinc finger protein 346 protein-coding ZNF346 zinc finger protein 346 O double-stranded RNA-binding zinc finger protein JAZ|just another zinc finger protein 20121230 -9606 23568 ARL2BP - BART|BART1 HGNC:17146|Ensembl:ENSG00000102931|HPRD:09808|Vega:OTTHUMG00000133459 16 16q13 ADP-ribosylation factor-like 2 binding protein protein-coding ARL2BP ADP-ribosylation factor-like 2 binding protein O ADP-ribosylation factor-like protein 2-binding protein|ARF-like 2-binding protein|Arf-like 2 binding protein BART1|binder of ARF2 protein 1|binder of Arl Two|binder of Arl2 20121230 -9606 23569 PADI4 - PAD|PAD4|PADI5|PDI4|PDI5 HGNC:18368|MIM:605347|Ensembl:ENSG00000159339|HPRD:05635|Vega:OTTHUMG00000002371 1 1p36.13 peptidyl arginine deiminase, type IV protein-coding PADI4 peptidyl arginine deiminase, type IV O HL-60 PAD|PADI-H protein|peptidyl arginine deiminase, type V|protein-arginine deiminase type IV|protein-arginine deiminase type-4 20121230 -9606 23572 PRG4 - - MIM:605160 17 - p53-responsive gene 4 other - - - - 20101208 -9606 23574 PRG1 - - MIM:605157 19 19q13.2 p53-responsive gene 1 miscRNA - - - - 20121230 -9606 23576 DDAH1 RP4-621F18.1 DDAH HGNC:2715|MIM:604743|Ensembl:ENSG00000153904|HPRD:09203|Vega:OTTHUMG00000010578 1 1p22 dimethylarginine dimethylaminohydrolase 1 protein-coding DDAH1 dimethylarginine dimethylaminohydrolase 1 O DDAH-1|DDAHI|N(G),N(G)-dimethylarginine dimethylaminohydrolase 1|NG, NG-dimethylarginine dimethylaminohydrolase|dimethylargininase-1 20121230 -9606 23580 CDC42EP4 - BORG4|CEP4|KAIA1777 HGNC:17147|MIM:605468|Ensembl:ENSG00000179604|HPRD:08383|Vega:OTTHUMG00000178419 17 17q24-q25 CDC42 effector protein (Rho GTPase binding) 4 protein-coding CDC42EP4 CDC42 effector protein (Rho GTPase binding) 4 O binder of Rho GTPases 4|cdc42 effector protein 4 20121230 -9606 23581 CASP14 - - HGNC:1502|MIM:605848|Ensembl:ENSG00000105141|HPRD:05788 19 19p13.1 caspase 14, apoptosis-related cysteine peptidase protein-coding CASP14 caspase 14, apoptosis-related cysteine peptidase O CASP-14|apoptosis-related cysteine protease|caspase 14, apoptosis-related cysteine protease|caspase-14 20121230 -9606 23582 CCNDBP1 - DIP1|GCIP|HHM HGNC:1587|MIM:607089|Ensembl:ENSG00000166946|HPRD:06156|Vega:OTTHUMG00000130703 15 15q14-q15 cyclin D-type binding-protein 1 protein-coding CCNDBP1 cyclin D-type binding-protein 1 O D-type cyclin-interacting protein 1|cyclin-D1-binding protein 1|grap2 and cyclin-D-interacting protein|human homolog of Maid 20121230 -9606 23583 SMUG1 - FDG|HMUDG|UNG3 HGNC:17148|MIM:607753|Ensembl:ENSG00000123415|HPRD:06376|Vega:OTTHUMG00000160068 12 12q13.11-q13.3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 O single-strand selective monofunctional uracil DNA glycosylase 20121230 -9606 23584 VSIG2 UNQ2770/PRO7154 2210413P10Rik|CTH|CTXL HGNC:17149|MIM:606011|Ensembl:ENSG00000019102|HPRD:08390|Vega:OTTHUMG00000150357 11 11q24 V-set and immunoglobulin domain containing 2 protein-coding VSIG2 V-set and immunoglobulin domain containing 2 O CT-like protein|V-set and immunoglobulin domain-containing protein 2|cortical thymocyte receptor (X. laevis CTX) like|cortical thymocyte-like protein 20121230 -9606 23585 TMEM50A RP11-335G20.3 IFNRC|SMP1 HGNC:30590|MIM:605348|Ensembl:ENSG00000183726|HPRD:05636|Vega:OTTHUMG00000007651 1 1p36.11 transmembrane protein 50A protein-coding TMEM50A transmembrane protein 50A O cervical cancer oncogene 9|small membrane protein 1 20121230 -9606 23586 DDX58 RP11-334P12.2 RIG-I|RIGI|RLR-1 HGNC:19102|MIM:609631|Ensembl:ENSG00000107201|HPRD:13131|Vega:OTTHUMG00000019746 9 9p12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 protein-coding DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 O DEAD box protein 58|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide|RIG-1|RIG-I-like receptor 1|RNA helicase RIG-I|probable ATP-dependent RNA helicase DDX58|retinoic acid inducible gene I|retinoic acid-inducible gene 1 protein|retinoic acid-inducible gene I protein 20121230 -9606 23587 ELP5 HSPC002 C17orf81|DERP6|MST071|MSTP071 HGNC:30617|Ensembl:ENSG00000170291|HPRD:08520|Vega:OTTHUMG00000177974 17 17p13.1 elongator acetyltransferase complex subunit 5 protein-coding ELP5 elongator acetyltransferase complex subunit 5 O S-phase 2 protein|dermal papilla derived protein 6|dermal papilla-derived protein 6|elongator complex protein 5 20121230 -9606 23588 KLHDC2 - HCLP-1|LCP HGNC:20231|MIM:611280|Ensembl:ENSG00000165516|HPRD:08824|Vega:OTTHUMG00000140288 14 14q21.3 kelch domain containing 2 protein-coding KLHDC2 kelch domain containing 2 O hepatocellular carcinoma-associated antigen 33|host cell factor homolog LCP|host cell factor-like protein 1|kelch domain-containing protein 2 20121230 -9606 23589 CARHSP1 - CRHSP-24|CSDC1 HGNC:17150|Ensembl:ENSG00000153048|HPRD:08515|Vega:OTTHUMG00000129695 16 16p13.2 calcium regulated heat stable protein 1, 24kDa protein-coding CARHSP1 calcium regulated heat stable protein 1, 24kDa O calcium-regulated heat stable protein 1|calcium-regulated heat-stable protein (24kD)|calcium-regulated heat-stable protein of 24 kDa 20121230 -9606 23590 PDSS1 - COQ1|COQ10D2|DPS|RP13-16H11.3|SPS|TPRT|TPT|TPT 1|hDPS1 HGNC:17759|MIM:607429|Ensembl:ENSG00000148459|HPRD:09591|Vega:OTTHUMG00000017844 10 10p12.1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein-coding PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 O all-trans-decaprenyl-diphosphate synthase subunit 1|coenzyme Q1 homolog|decaprenyl pyrophosphate synthase subunit 1|decaprenyl-diphosphate synthase subunit 1|polyprenyl pyrophosphate synthetase|subunit 1 of decaprenyl diphosphate synthase|trans-prenyltransferase (TPT)|trans-prenyltransferase 1 20121230 -9606 23591 FAM215A - APR-2|C17orf88|LINC00530 HGNC:17505|HPRD:08497 17 17q21.31 family with sequence similarity 215, member A (non-protein coding) miscRNA FAM215A family with sequence similarity 215, member A (non-protein coding) O - 20121230 -9606 23592 LEMD3 - MAN1 HGNC:28887|MIM:607844|Ensembl:ENSG00000174106|HPRD:09704|Vega:OTTHUMG00000168840 12 12q14 LEM domain containing 3 protein-coding LEMD3 LEM domain containing 3 O LEM domain-containing protein 3|inner nuclear membrane protein Man1|integral inner nuclear membrane protein 20121230 -9606 23593 HEBP2 RP3-422G23.1 C6ORF34B|C6orf34|PP23|SOUL HGNC:15716|MIM:605825|Ensembl:ENSG00000051620|HPRD:09316|Vega:OTTHUMG00000015671 6 6q24 heme binding protein 2 protein-coding HEBP2 heme binding protein 2 O heme-binding protein 2|placental protein 23 20121230 -9606 23594 ORC6 - ORC6L HGNC:17151|MIM:607213|Ensembl:ENSG00000091651|HPRD:06237|Vega:OTTHUMG00000132539 16 16q12 origin recognition complex, subunit 6 protein-coding ORC6 origin recognition complex, subunit 6 O origin recognition complex subunit 6 20121230 -9606 23595 ORC3 RP3-486L4.1 LAT|LATHEO|ORC3L HGNC:8489|MIM:604972|Ensembl:ENSG00000135336|HPRD:05398|Vega:OTTHUMG00000015179 6 6q14.3-q16.1 origin recognition complex, subunit 3 protein-coding ORC3 origin recognition complex, subunit 3 O homolog of latheo, Drosophila|origin recognition complex subunit 3|origin recognition complex subunit Latheo|origin recognition complex, subunit 3 honolog 20121230 -9606 23596 OPN3 - ECPN HGNC:14007|MIM:606695|Ensembl:ENSG00000054277|HPRD:05985|Vega:OTTHUMG00000039691 1 1q43 opsin 3 protein-coding OPN3 opsin 3 O encephalopsin|opsin 3 (encephalopsin, panopsin)|opsin-3 20121230 -9606 23597 ACOT9 CGI-16 ACATE2|MT-ACT48|MTACT48 HGNC:17152|MIM:300862|Ensembl:ENSG00000123130|HPRD:06438|Vega:OTTHUMG00000021257 X Xp22.11 acyl-CoA thioesterase 9 protein-coding ACOT9 acyl-CoA thioesterase 9 O acyl-CoA thioester hydrolase 9|acyl-Coenzyme A thioesterase 2, mitochondrial|acyl-coenzyme A thioesterase 9, mitochondrial|mitochondrial Acyl-CoA Thioesterase 20121230 -9606 23598 PATZ1 - MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 HGNC:13071|MIM:605165|Ensembl:ENSG00000100105|HPRD:05522|Vega:OTTHUMG00000151254 22 22q12.2 POZ (BTB) and AT hook containing zinc finger 1 protein-coding PATZ1 POZ (BTB) and AT hook containing zinc finger 1 O BTB-POZ domain zinc finger transcription factor|BTB/POZ domain zinc finger transcription factor|MAZ-related factor|POZ-, AT hook-, and zinc finger-containing protein 1|POZ-AT hook-zinc finger protein|protein kinase A RI subunit alpha-associated protein|zinc finger and BTB domain-containing protein 19|zinc finger protein 278|zinc finger sarcoma gene protein 20121230 -9606 23600 AMACR - AMACRD|CBAS4|RACE|RM HGNC:451|MIM:604489|Ensembl:ENSG00000242110|HPRD:05134|Vega:OTTHUMG00000090734 5 5p13 alpha-methylacyl-CoA racemase protein-coding AMACR alpha-methylacyl-CoA racemase O 2-methylacyl-CoA racemase 20121230 -9606 23601 CLEC5A - CLECSF5|MDL-1|MDL1 HGNC:2054|MIM:604987|Ensembl:ENSG00000258227|HPRD:09229|Vega:OTTHUMG00000157173 7 7q33 C-type lectin domain family 5, member A protein-coding CLEC5A C-type lectin domain family 5, member A O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 5|C-type lectin domain family 5 member A|C-type lectin superfamily member 5|myeloid DAP12-associating lectin 1|myeloid DAP12-associating lectin-1 20121230 -9606 23603 CORO1C - HCRNN4 HGNC:2254|MIM:605269|Ensembl:ENSG00000110880|HPRD:09244|Vega:OTTHUMG00000169381 12 12q24.1 coronin, actin binding protein, 1C protein-coding CORO1C coronin, actin binding protein, 1C O coronin 1C|coronin, actin-binding protein, 1C|coronin-1C|coronin-3 20121230 -9606 23604 DAPK2 - DRP-1|DRP1 HGNC:2675|Ensembl:ENSG00000035664|HPRD:09905|Vega:OTTHUMG00000132947 15 15q22.31 death-associated protein kinase 2 protein-coding DAPK2 death-associated protein kinase 2 O DAP kinase 2|DAP-kinase-related protein 1 beta isoform 20121230 -9606 23605 HMGN2P9 - HMG17L1|HMGN2L9|dJ388M5|dJ388M5.2 HGNC:4987 22 22q13.2 high mobility group nucleosomal binding domain 2 pseudogene 9 pseudo HMGN2P9 high mobility group nucleosomal binding domain 2 pseudogene 9 O - 20121230 -9606 23606 HMGN2P10 - HMG17L2|HMGN2L10|bK216E10 HGNC:4988 22 22q13.2-q13.31 high mobility group nucleosomal binding domain 2 pseudogene10 pseudo HMGN2P10 high mobility group nucleosomal binding domain 2 pseudogene10 O - 20121230 -9606 23607 CD2AP - CMS HGNC:14258|MIM:604241|Ensembl:ENSG00000198087|HPRD:05026|Vega:OTTHUMG00000014799 6 6p12 CD2-associated protein protein-coding CD2AP CD2-associated protein O Cas ligand with multiple Src homology 3 (SH3) domains|adapter protein CMS|cas ligand with multiple SH3 domains 20121230 -9606 23608 MKRN1 - RNF61 HGNC:7112|MIM:607754|Ensembl:ENSG00000133606|HPRD:09673|Vega:OTTHUMG00000157412 7 7q34 makorin ring finger protein 1 protein-coding MKRN1 makorin ring finger protein 1 O E3 ubiquitin-protein ligase makorin-1|RING finger protein 61 20121230 -9606 23609 MKRN2 HSPC070 RNF62 HGNC:7113|MIM:608426|Ensembl:ENSG00000075975|HPRD:09761|Vega:OTTHUMG00000155371 3 3p25 makorin ring finger protein 2 protein-coding MKRN2 makorin ring finger protein 2 O RING finger protein 62|makorin RING zinc-finger protein 2|probable E3 ubiquitin-protein ligase makorin-2 20121230 -9606 23610 MKRN6P - MKRNP2 HGNC:7118 6 6p21.2 makorin ring finger protein 6, pseudogene pseudo MKRN6P makorin ring finger protein 6, pseudogene O - 20121230 -9606 23612 PHLDA3 - TIH1 HGNC:8934|MIM:607054|Ensembl:ENSG00000174307|HPRD:09519|Vega:OTTHUMG00000035767 1 1q31 pleckstrin homology-like domain, family A, member 3 protein-coding PHLDA3 pleckstrin homology-like domain, family A, member 3 O TDAG51/Ipl homolog 1|pleckstrin homology-like domain family A member 3|pleckstrin homology-like domain, family A, member 2 20121230 -9606 23613 ZMYND8 RP5-890O15.1 PRKCBP1|PRO2893|RACK7 HGNC:9397|Ensembl:ENSG00000101040|HPRD:10166|Vega:OTTHUMG00000032667 20 20q13.12 zinc finger, MYND-type containing 8 protein-coding ZMYND8 zinc finger, MYND-type containing 8 O CTCL tumor antigen se14-3|CTCL-associated antigen se14-3|cutaneous T-cell lymphoma associated antigen se14-3|cutaneous T-cell lymphoma-associated antigen se14-3|predicted protein of HQ2893|protein kinase C binding protein 1|protein kinase C-binding protein 1|zinc finger MYND domain containing protein 8|zinc finger MYND domain-containing protein 8 20121230 -9606 23614 PPY2 - - HGNC:9328|MIM:606638|HPRD:09437 17 17q11 pancreatic polypeptide 2 pseudo PPY2 pancreatic polypeptide 2 O - 20121230 -9606 23615 PYY2 - - HGNC:9749|MIM:606637|HPRD:07589 17 17q11 peptide YY, 2 (pseudogene) pseudo PYY2 peptide YY, 2 (pseudogene) O - 20121230 -9606 23616 SH3BP1 - ARHGAP43 HGNC:10824|Ensembl:ENSG00000100092|HPRD:10227|Vega:OTTHUMG00000030996 22 22q13.1 SH3-domain binding protein 1 protein-coding SH3BP1 SH3-domain binding protein 1 O 3BP-1|SH3 domain binding protein 1|SH3 domain-binding protein 1 20121230 -9606 23617 TSSK2 - DGS-G|SPOGA2|STK22B|TSK2 HGNC:11401|MIM:610710|Ensembl:ENSG00000206203|HPRD:10255|Vega:OTTHUMG00000150118 22 22q11.21 testis-specific serine kinase 2 protein-coding TSSK2 testis-specific serine kinase 2 O TSK-2|TSSK-2|diGeorge syndrome protein G|serine/threonine kinase 22B (spermiogenesis associated)|serine/threonine-protein kinase 22B|spermiogenesis associated 2|testis specific serine threonine kinase 2|testis-specific kinase 2|testis-specific serine/threonine-protein kinase 2 20121230 -9606 23619 ZIM2 - ZNF656 HGNC:12875|Ensembl:ENSG00000198300|HPRD:10321 19 19q13.4 zinc finger, imprinted 2 protein-coding ZIM2 zinc finger, imprinted 2 O zinc finger imprinted 2|zinc finger protein 656 20121230 -9606 23620 NTSR2 - NTR2 HGNC:8040|MIM:605538|Ensembl:ENSG00000169006|HPRD:05704|Vega:OTTHUMG00000119083 2 2p25.1 neurotensin receptor 2 protein-coding NTSR2 neurotensin receptor 2 O NT-R-2|levocabastine-sensitive neurotensin receptor|neurotensin receptor type 2|neurotensin receptor, type 2 20121230 -9606 23621 BACE1 - ASP2|BACE|HSPC104 HGNC:933|MIM:604252|Ensembl:ENSG00000186318|Ensembl:ENSG00000265969|HPRD:07255|Vega:OTTHUMG00000160636 11 11q23.2-q23.3 beta-site APP-cleaving enzyme 1 protein-coding BACE1 beta-site APP-cleaving enzyme 1 O APP beta-secretase|asp 2|aspartyl protease 2|beta-secretase 1|beta-secretase 1 precursor variant 1|beta-site APP cleaving enzyme 1|beta-site amyloid beta A4 precursor protein-cleaving enzyme|memapsin-2|membrane-associated aspartic protease 2|transmembrane aspartic proteinase Asp2 20121230 -9606 23623 RUSC1 RP11-21N7.4 NESCA HGNC:17153|Ensembl:ENSG00000160753|HPRD:10206|Vega:OTTHUMG00000013910 1 1q21-q22 RUN and SH3 domain containing 1 protein-coding RUSC1 RUN and SH3 domain containing 1 O RUN and SH3 domain-containing protein 1|new molecule containing SH3 at the carboxy-terminus 20121230 -9606 23624 CBLC - CBL-3|CBL-SL|RNF57 HGNC:15961|MIM:608453|Ensembl:ENSG00000142273|HPRD:09765|Vega:OTTHUMG00000150715 19 19q13.2 Cbl proto-oncogene, E3 ubiquitin protein ligase C protein-coding CBLC Cbl proto-oncogene, E3 ubiquitin protein ligase C O Cas-Br-M (murine) ecotropic retroviral transforming sequence c|Cas-Br-M (murine) ectropic retroviral transforming sequence c|RING finger protein 57|SH3-binding protein CBL-3|SH3-binding protein CBL-C|signal transduction protein CBL-C 20121230 -9606 23625 FAM89B - MTVR1 HGNC:16708|Ensembl:ENSG00000176973|HPRD:10100|Vega:OTTHUMG00000166499 11 11q13 family with sequence similarity 89, member B protein-coding FAM89B family with sequence similarity 89, member B O mammary tumor virus receptor homolog 1|protein FAM89B 20121230 -9606 23626 SPO11 RP3-481F12.5 CT35 HGNC:11250|MIM:605114|Ensembl:ENSG00000054796|HPRD:09236|Vega:OTTHUMG00000032817 20 20q13.31 SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) protein-coding SPO11 SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) O cancer/testis antigen 35|meiotic recombination protein SPO11 20121230 -9606 23627 PRND UNQ1830/PRO3443 DOPPEL|DPL|PrPLP|dJ1068H6.4 HGNC:15748|MIM:604263|Ensembl:ENSG00000171864|HPRD:05039|Vega:OTTHUMG00000031789 20 20pter-p12 prion protein 2 (dublet) protein-coding PRND prion protein 2 (dublet) O prion gene complex, downstream|prion-like protein doppel 20121230 -9606 23629 BRD7P3 - BP75 HGNC:24171 6 6q22.31 bromodomain containing 7 pseudogene 3 pseudo BRD7P3 bromodomain containing 7 pseudogene 3 O - 20121230 -9606 23630 KCNE1L RP1-136J15.2 KCNE5 HGNC:6241|MIM:300328|Ensembl:ENSG00000176076|HPRD:02268|Vega:OTTHUMG00000022189 X Xq22.3 KCNE1-like protein-coding KCNE1L KCNE1-like O AMME syndrome candidate gene 2 protein|AMMECR2 protein|cardiac voltage-gated potassium channel accessory subunit 5|potassium voltage-gated channel subfamily E member 1-like protein|potassium voltage-gated channel, Isk-related family, member 1-like 20121230 -9606 23632 CA14 UNQ690/PRO1335 CAXiV HGNC:1372|MIM:604832|Ensembl:ENSG00000118298|HPRD:05320|Vega:OTTHUMG00000012549 1 1q21 carbonic anhydrase XIV protein-coding CA14 carbonic anhydrase XIV O CA-XIV|carbonate dehydratase XIV|carbonic anhydrase 14|carbonic dehydratase 20121230 -9606 23633 KPNA6 RP4-622L5.1 IPOA7|KPNA7 HGNC:6399|MIM:610563|Ensembl:ENSG00000025800|HPRD:09465|Vega:OTTHUMG00000004333 1 1p35.1 karyopherin alpha 6 (importin alpha 7) protein-coding KPNA6 karyopherin alpha 6 (importin alpha 7) O importin alpha 7 subunit|importin subunit alpha-7|importin-alpha-S2|karyopherin subunit alpha-6 20121230 -9606 23635 SSBP2 - HSPC116|SOSS-B2 HGNC:15831|MIM:607389|Ensembl:ENSG00000145687|HPRD:09577|Vega:OTTHUMG00000119039 5 5q14.1 single-stranded DNA binding protein 2 protein-coding SSBP2 single-stranded DNA binding protein 2 O sequence-specific single-stranded-DNA-binding protein 2|single-stranded DNA-binding protein 2 20121230 -9606 23636 NUP62 - IBSN|SNDI|p62 HGNC:8066|MIM:605815|Ensembl:ENSG00000213024|HPRD:05782 19 19q13.33 nucleoporin 62kDa protein-coding NUP62 nucleoporin 62kDa O 62 kDa nucleoporin|nuclear pore glycoprotein p62|nucleoporin Nup62 20121230 -9606 23637 RABGAP1 HSPC094 GAPCENA|RP11-123N4.2|TBC1D11 HGNC:17155|Ensembl:ENSG00000011454|HPRD:06575|Vega:OTTHUMG00000020633 9 9q34.11 RAB GTPase activating protein 1 protein-coding RABGAP1 RAB GTPase activating protein 1 O GAP and centrosome-associated protein|Rab6 GTPase activating protein, GAPCenA|TBC1 domain family, member 11|rab GTPase-activating protein 1|rab6 GTPase activating protein (GAP and centrosome-associated)|rab6 GTPase-activating protein GAPCenA 20121230 -9606 23639 LRRC6 - CILD19|LRTP|TSLRP HGNC:16725|MIM:614930|Ensembl:ENSG00000129295|HPRD:10286|Vega:OTTHUMG00000164646 8 8q24.22 leucine rich repeat containing 6 protein-coding LRRC6 leucine rich repeat containing 6 O protein TILB homolog|testis-specific leucine-rich repeat protein 20121230 -9606 23640 HSPBP1 PP1845 FES1 HGNC:24989|MIM:612939|Ensembl:ENSG00000133265|HPRD:09991|Vega:OTTHUMG00000180705 19 19q13.42 HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 protein-coding HSPBP1 HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 O Hsp70 binding protein 1|heat shock protein-binding protein 1|hsp70 interacting protein|hsp70-binding protein 1|hsp70-binding protein 2|hsp70-interacting protein 1|hsp70-interacting protein 2|hspBP2 20121230 -9606 23641 LDOC1 - BCUR1|Mar7|Mart7 HGNC:6548|MIM:300402|Ensembl:ENSG00000182195|HPRD:02322|Vega:OTTHUMG00000022558 X Xq27 leucine zipper, down-regulated in cancer 1 protein-coding LDOC1 leucine zipper, down-regulated in cancer 1 O breast cancer, up-regulated 1|leucine zipper protein down-regulated in cancer cells|protein LDOC1 20121230 -9606 23642 SNHG1 - LINC00057|NCRNA00057|U22HG|UHG HGNC:32688|MIM:603222 11 11q12.3 small nucleolar RNA host gene 1 (non-protein coding) miscRNA SNHG1 small nucleolar RNA host gene 1 (non-protein coding) O - 20121230 -9606 23643 LY96 - ESOP-1|MD-2|MD2|ly-96 HGNC:17156|MIM:605243|Ensembl:ENSG00000154589|HPRD:05579|Vega:OTTHUMG00000164504 8 8q21.11 lymphocyte antigen 96 protein-coding LY96 lymphocyte antigen 96 O myeloid differentiation protein-2|protein MD-2 20121230 -9606 23644 EDC4 - GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8 HGNC:17157|MIM:606030|Ensembl:ENSG00000038358|HPRD:06911|Vega:OTTHUMG00000137543 16 16q22.1 enhancer of mRNA decapping 4 protein-coding EDC4 enhancer of mRNA decapping 4 O autoantigen Ge-1|autoantigen RCD-8|enhancer of mRNA-decapping protein 4|human enhancer of decapping large subunit 20121230 -9606 23645 PPP1R15A - GADD34 HGNC:14375|MIM:611048|Ensembl:ENSG00000087074|HPRD:06572 19 19q13.2 protein phosphatase 1, regulatory subunit 15A protein-coding PPP1R15A protein phosphatase 1, regulatory subunit 15A O growth arrest and DNA damage-inducible protein GADD34|growth arrest and DNA-damage-inducible 34|myeloid differentiation primary response protein MyD116 homolog|protein phosphatase 1 regulatory subunit 15A|protein phosphatase 1, regulatory (inhibitor) subunit 15A 20121230 -9606 23646 PLD3 - HU-K4|HUK4 HGNC:17158|Ensembl:ENSG00000105223|HPRD:07148|Vega:OTTHUMG00000152736 19 19q13.2 phospholipase D family, member 3 protein-coding PLD3 phospholipase D family, member 3 O PLD 3|choline phosphatase 3|hindIII K4L homolog|phosphatidylcholine-hydrolyzing phospholipase D3|phospholipase D3 20121230 -9606 23647 ARFIP2 - POR1 HGNC:17160|MIM:601638|Ensembl:ENSG00000132254|HPRD:07209|Vega:OTTHUMG00000133406 11 11p15 ADP-ribosylation factor interacting protein 2 protein-coding ARFIP2 ADP-ribosylation factor interacting protein 2 O arfaptin-2|partner of RAC1 (arfaptin 2) 20121230 -9606 23648 SSBP3 RP5-997D24.2 CSDP|SSDP|SSDP1 HGNC:15674|MIM:607390|Ensembl:ENSG00000157216|HPRD:09578|Vega:OTTHUMG00000008264 1 1p32.3 single stranded DNA binding protein 3 protein-coding SSBP3 single stranded DNA binding protein 3 O sequence-specific single-stranded-DNA-binding protein|single-stranded DNA-binding protein 3 20121230 -9606 23649 POLA2 - - HGNC:30073|Ensembl:ENSG00000014138|HPRD:10160|Vega:OTTHUMG00000165951 11 11q13.1 polymerase (DNA directed), alpha 2, accessory subunit protein-coding POLA2 polymerase (DNA directed), alpha 2, accessory subunit O DNA polymerase alpha 70 kDa subunit|DNA polymerase alpha subunit B|polymerase (DNA directed), alpha 2 (70kD subunit)|polymerase (DNA-directed), alpha (70kD) 20121230 -9606 23650 TRIM29 - ATDC HGNC:17274|MIM:610658|Ensembl:ENSG00000137699|HPRD:10280|Vega:OTTHUMG00000140377 11 11q23.3 tripartite motif containing 29 protein-coding TRIM29 tripartite motif containing 29 O ataxia telangiectasia group D-associated protein|ataxia-telangiectasia group D-associated protein|tripartite motif protein TRIM29|tripartite motif-containing 29|tripartite motif-containing protein 29 20121230 -9606 23654 PLXNB2 RP3-402G11.19-002 MM1|Nbla00445|PLEXB2|dJ402G11.3 HGNC:9104|MIM:604293|Ensembl:ENSG00000196576|HPRD:05050|Vega:OTTHUMG00000150219 22 22q13.33 plexin B2 protein-coding PLXNB2 plexin B2 O plexin-B2 20121230 -9606 23657 SLC7A11 - CCBR1|xCT HGNC:11059|MIM:607933|Ensembl:ENSG00000151012|HPRD:09720|Vega:OTTHUMG00000133396 4 4q28-q32 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 protein-coding SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 O amino acid transport system xc-|calcium channel blocker resistance protein CCBR1|cystine/glutamate transporter|solute carrier family 7 member 11|solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 20121230 -9606 23658 LSM5 - YER146W HGNC:17162|MIM:607285|Ensembl:ENSG00000106355|HPRD:06285|Vega:OTTHUMG00000022913 7 7p14.3 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) O U6 snRNA-associated Sm-like protein LSm5 20121230 -9606 23659 PLA2G15 UNQ341/PRO540 ACS|GXVPLA2|LLPL|LPLA2|LYPLA3 HGNC:17163|MIM:609362|Ensembl:ENSG00000103066|HPRD:07128|Vega:OTTHUMG00000137554 16 16q22.1 phospholipase A2, group XV protein-coding PLA2G15 phospholipase A2, group XV O 1-O-acylceramide synthase|LCAT-like lysophospholipase|group XV phospholipase A2|lysophospholipase 3 (lysosomal phospholipase A2)|lysosomal phospholipase A2 20121230 -9606 23660 ZKSCAN5 - ZFP95|ZNF914 HGNC:12867|MIM:611272|Ensembl:ENSG00000196652|HPRD:10318|Vega:OTTHUMG00000156749 7 7q22 zinc finger with KRAB and SCAN domains 5 protein-coding ZKSCAN5 zinc finger with KRAB and SCAN domains 5 O zfp-95|zinc finger protein 95 homolog|zinc finger protein homologous to Zfp95 in mouse|zinc finger protein with KRAB and SCAN domains 5 20121230 -9606 23662 USH3B - - HGNC:12606 - - Usher syndrome 3B unknown USH3B Usher syndrome 3B O - 20110215 -9606 23666 UBBP4 - - HGNC:12467 17 17p11.2 ubiquitin B pseudogene 4 pseudo UBBP4 ubiquitin B pseudogene 4 O - 20121230 -9606 23667 UBBP3 - - HGNC:12466 2 2q22.3 ubiquitin B pseudogene 3 pseudo UBBP3 ubiquitin B pseudogene 3 O - 20121230 -9606 23668 UBBP2 - - HGNC:12465 1 1q32 ubiquitin B pseudogene 2 pseudo UBBP2 ubiquitin B pseudogene 2 O - 20121230 -9606 23670 TMEM2 RP11-52I12.1 - HGNC:11869|MIM:605835|Ensembl:ENSG00000135048|HPRD:09317|Vega:OTTHUMG00000020000 9 9q21.13 transmembrane protein 2 protein-coding TMEM2 transmembrane protein 2 O - 20121230 -9606 23671 TMEFF2 UNQ178/PRO204 CT120.2|HPP1|TENB2|TPEF|TR HGNC:11867|MIM:605734|Ensembl:ENSG00000144339|HPRD:05760|Vega:OTTHUMG00000132723 2 2q32.3 transmembrane protein with EGF-like and two follistatin-like domains 2 protein-coding TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2 O TR-2|cancer/testis antigen family 120, member 2|hyperplastic polyposis protein 1|tomoregulin|tomoregulin-2|transmembrane protein TENB2 20121230 -9606 23673 STX12 RP3-426I6.4 STX13|STX14 HGNC:11430|MIM:606892|Ensembl:ENSG00000117758|HPRD:06059|Vega:OTTHUMG00000003730 1 1p35.3 syntaxin 12 protein-coding STX12 syntaxin 12 O syntaxin-12 20121230 -9606 23676 SMPX - DFNX4 HGNC:11122|MIM:300226|Ensembl:ENSG00000091482|HPRD:02204|Vega:OTTHUMG00000021235 X Xp22.1 small muscle protein, X-linked protein-coding SMPX small muscle protein, X-linked O small muscular protein|stretch-responsive skeletal muscle protein 20121230 -9606 23677 SH3BP4 - BOG25|TTP HGNC:10826|MIM:605611|Ensembl:ENSG00000130147|HPRD:09285|Vega:OTTHUMG00000133292 2 2q37.1-q37.2 SH3-domain binding protein 4 protein-coding SH3BP4 SH3-domain binding protein 4 O EH-binding protein 10|SH3 domain-binding protein 4|transferrin receptor trafficking protein|transferrin receptor-trafficking protein 20121230 -9606 23678 SGK3 - CISK|SGK2|SGKL HGNC:10812|MIM:607591|Ensembl:ENSG00000104205|HPRD:06349|Vega:OTTHUMG00000164561 8 8q12 serum/glucocorticoid regulated kinase family, member 3 protein-coding SGK3 serum/glucocorticoid regulated kinase family, member 3 O cytokine-independent survival kinase|serine/threonine-protein kinase Sgk3 20121230 -9606 23679 SEPW1P - - HGNC:10753 1 1p35.2 selenoprotein W, 1 pseudogene pseudo SEPW1P selenoprotein W, 1 pseudogene O - 20121230 -9606 23682 RAB38 - NY-MEL-1|rrGTPbp HGNC:9776|MIM:606281|Ensembl:ENSG00000123892|HPRD:05889|Vega:OTTHUMG00000167288 11 11q14 RAB38, member RAS oncogene family protein-coding RAB38 RAB38, member RAS oncogene family O Rab-related GTP-binding protein|melanoma antigen NY-MEL-1|ras-related protein Rab-38 20121230 -9606 23683 PRKD3 - EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU HGNC:9408|MIM:607077|Ensembl:ENSG00000115825|HPRD:06151|Vega:OTTHUMG00000100961 2 2p21 protein kinase D3 protein-coding PRKD3 protein kinase D3 O protein kinase C nu type|protein kinase C, nu|protein kinase EPK2|protein-serine/threonine kinase|serine/threonine-protein kinase D3 20121230 -9606 23685 PQBP4 - - HGNC:9333 - - polyglutamine binding protein 4 protein-coding PQBP4 polyglutamine binding protein 4 O - 20080828 -9606 23691 NNO1 - - HGNC:7862|MIM:600165 11 11p13 nanophthalmos 1 unknown NNO1 nanophthalmos 1 O - 20120622 -9606 23693 MRX74 - - HGNC:7308 X - mental retardation, X-linked 74 unknown MRX74 mental retardation, X-linked 74 O - 20110215 -9606 23694 MRX73 - - HGNC:7307|MIM:300355 X Xp22.2 mental retardation, X-linked 73 unknown MRX73 mental retardation, X-linked 73 O - 20110215 -9606 23695 MRX72 - - HGNC:7306|MIM:300271 X Xq28 mental retardation, X-linked 72 unknown MRX72 mental retardation, X-linked 72 O - 20120622 -9606 23696 MRX70 - - HGNC:7305 X Xq23-q25 mental retardation, X-linked 70 unknown MRX70 mental retardation, X-linked 70 O - 20110215 -9606 23697 MRX69 - - HGNC:7303 X Xp11.21-q22.1 mental retardation, X-linked 69 unknown MRX69 mental retardation, X-linked 69 O - 20110215 -9606 23699 MRX67 - - HGNC:7301 X - mental retardation, X-linked 67 unknown MRX67 mental retardation, X-linked 67 O - 20110215 -9606 23700 MRX66 - - HGNC:7300 X - mental retardation, X-linked 66 unknown MRX66 mental retardation, X-linked 66 O - 20110215 -9606 23704 KCNE4 - MIRP3 HGNC:6244|MIM:607775|Ensembl:ENSG00000152049|HPRD:09689|Vega:OTTHUMG00000133161 2 2q36.1 potassium voltage-gated channel, Isk-related family, member 4 protein-coding KCNE4 potassium voltage-gated channel, Isk-related family, member 4 O MINK-related peptide 3|cardiac voltage-gated potassium channel accessory subunit 4|minimum potassium ion channel-related peptide 3|potassium channel subunit beta MiRP3|potassium voltage-gated channel subfamily E member 4 20121230 -9606 23705 CADM1 - BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 HGNC:5951|MIM:605686|Ensembl:ENSG00000182985|HPRD:05746|Vega:OTTHUMG00000168202 11 11q23.2 cell adhesion molecule 1 protein-coding CADM1 cell adhesion molecule 1 O TSLC-1|TSLC1/Nectin-like 2/IGSF4|immunoglobulin superfamily member 4|immunoglobulin superfamily, member 4|immunoglobulin superfamily, member 4D variant 2|nectin-like 2|nectin-like protein 2|spermatogenic immunoglobulin superfamily|synaptic cell adhesion molecule|truncated CADM1 protein|tumor suppressor in lung cancer 1 20121230 -9606 23706 IBGC1 - BGCI|IBGC HGNC:5336|MIM:213600 14 14q idiopathic basal ganglia calcification 1 unknown IBGC1 idiopathic basal ganglia calcification 1 O - 20120622 -9606 23708 GSPT2 - ERF3B|GST2 HGNC:4622|MIM:300418|Ensembl:ENSG00000189369|HPRD:02334|Vega:OTTHUMG00000021538 X Xp11.22 G1 to S phase transition 2 protein-coding GSPT2 G1 to S phase transition 2 O eukaryotic peptide chain release factor GTP-binding subunit ERF3B|eukaryotic peptide chain release factor subunit 3b 20121230 -9606 23710 GABARAPL1 - APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 HGNC:4068|MIM:607420|Ensembl:ENSG00000139112|HPRD:07601|Vega:OTTHUMG00000168411 12 12p13.2 GABA(A) receptor-associated protein like 1 protein-coding GABARAPL1 GABA(A) receptor-associated protein like 1 O GABA(A) receptor-associated protein-like 1|GABARAPL1-a|GEC-1|early estrogen-regulated protein|gamma-aminobutyric acid receptor-associated protein-like 1|glandular epithelial cell protein 1 20121230 -9606 23713 DFNB27 - - HGNC:2833|MIM:605818 2 2q24 deafness, autosomal recessive 27 unknown DFNB27 deafness, autosomal recessive 27 O - 20120622 -9606 23714 DFNB26 - - HGNC:2832|MIM:605428 4 4q31 deafness, autosomal recessive 26 unknown DFNB26 deafness, autosomal recessive 26 O - 20120622 -9606 23719 DFNA30 - - HGNC:2802|MIM:606451 15 15q25-q26 deafness, autosomal dominant 30 unknown DFNA30 deafness, autosomal dominant 30 O - 20120622 -9606 23720 DFNA29 - - HGNC:2800 - - deafness, autosomal dominant 29 unknown DFNA29 deafness, autosomal dominant 29 O - 20110215 -9606 23722 DFNA27 - - HGNC:2798|MIM:612431 4 4q12-q13.1 deafness, autosomal dominant 27 unknown DFNA27 deafness, autosomal dominant 27 O - 20120622 -9606 23723 DFNA24 - - HGNC:2796|MIM:606282 4 4q35-qter deafness, autosomal dominant 24 unknown DFNA24 deafness, autosomal dominant 24 O - 20120622 -9606 23727 CFM2 - - HGNC:1882 - - cystic fibrosis modifier 2 unknown CFM2 cystic fibrosis modifier 2 O - 20110215 -9606 23729 SHPK - CARKL|SHK HGNC:1492|MIM:605060|Ensembl:ENSG00000197417|HPRD:05451|Vega:OTTHUMG00000090694 17 17p13 sedoheptulokinase protein-coding SHPK sedoheptulokinase O carbohydrate kinase-like protein 20121230 -9606 23731 TMEM245 RP11-115J22.3 C9orf5|CG-2|CG2 HGNC:1363|Ensembl:ENSG00000106771|HPRD:09866|Vega:OTTHUMG00000020469 9 9q31 transmembrane protein 245 protein-coding TMEM245 transmembrane protein 245 O protein CG-2|transmembrane protein C9orf5 20121230 -9606 23732 FRRS1L - C9orf4|CG-6|CG6 HGNC:1362|MIM:604574|Ensembl:ENSG00000136805|HPRD:18583|Vega:OTTHUMG00000020468 9 9q31 ferric-chelate reductase 1-like protein-coding FRRS1L ferric-chelate reductase 1-like O DOMON domain-containing protein FRRS1L|brain protein CG-6|ferric-chelate reductase 1-like protein 20121230 -9606 23738 OFD1P17 - 71-7A3|71-7A5|C5orf1|OFD1P1 HGNC:1332 5 5p13 OFD1 pseudogene 17 pseudo OFD1P17 OFD1 pseudogene 17 O - 20121230 -9606 23739 C3CER1 - CER1 HGNC:1320 3 3p22-p21.2 chromosome 3 common eliminated region 1 other C3CER1 chromosome 3 common eliminated region 1 O - 20121201 -9606 23741 EID1 PNAS-22 C15orf3|CRI1|EID-1|IRO45620|PTD014|RBP21 HGNC:1191|MIM:605894|Ensembl:ENSG00000255302|HPRD:06907|Vega:OTTHUMG00000165911 15 15q21.1 EP300 interacting inhibitor of differentiation 1 protein-coding EID1 EP300 interacting inhibitor of differentiation 1 O 21 kDa pRb-associated protein|CREBBP/EP300 inhibitor 1|CREBBP/EP300 inhibitory protein 1|E1A-like inhibitor of differentiation 1|EP300-interacting inhibitor of differentiation 1|NB4 apoptosis related protein|Rb- and p300-binding protein EID-1|retinoblastoma protein-associated protein 20121230 -9606 23742 NPAP1 - C15orf2 HGNC:1190|MIM:610922|Ensembl:ENSG00000185823|HPRD:08506|Vega:OTTHUMG00000129179 15 15q11-q13 nuclear pore associated protein 1 protein-coding NPAP1 nuclear pore associated protein 1 O nuclear pore-associated protein 1|protein C15orf2 20121230 -9606 23743 BHMT2 - - HGNC:1048|MIM:605932|Ensembl:ENSG00000132840|HPRD:12069|Vega:OTTHUMG00000108158 5 5q13 betaine--homocysteine S-methyltransferase 2 protein-coding BHMT2 betaine--homocysteine S-methyltransferase 2 O S-methylmethionine--homocysteine S-methyltransferase BHMT2|SMM-hcy methyltransferase|betaine-homocysteine methyltransferase 2 20121230 -9606 23744 ATP5EP1 - - HGNC:839 4 4q25 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 1 pseudo ATP5EP1 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 1 O - 20121230 -9606 23746 AIPL1 - AIPL2|LCA4 HGNC:359|MIM:604392|Ensembl:ENSG00000129221|HPRD:05092|Vega:OTTHUMG00000102043 17 17p13.1 aryl hydrocarbon receptor interacting protein-like 1 protein-coding AIPL1 aryl hydrocarbon receptor interacting protein-like 1 O aryl-hydrocarbon-interacting protein-like 1 20121230 -9606 23749 YME1L1P1 - YME1L2 HGNC:12844 22 22q11.1 YME1-like 1 (S. cerevisiae) pseudogene 1 pseudo YME1L1P1 YME1-like 1 (S. cerevisiae) pseudogene 1 O - 20121230 -9606 23751 TOP3BP1 - TOP3B2 HGNC:11994 22 22q11.22 topoisomerase (DNA) III beta pseudogene 1 pseudo TOP3BP1 topoisomerase (DNA) III beta pseudogene 1 O - 20121230 -9606 23752 TSSK1A - SPOGA1|STK22A|TSSK1|TSSK1b|TSSK7P HGNC:11400 22 22q11.21 testis-specific serine kinase 1A pseudogene pseudo TSSK1A testis-specific serine kinase 1A pseudogene O - 20121230 -9606 23753 SDF2L1 UNQ1941/PRO4424 - HGNC:10676|MIM:607551|Ensembl:ENSG00000128228|HPRD:09614|Vega:OTTHUMG00000150820 22 22q11.21 stromal cell-derived factor 2-like 1 protein-coding SDF2L1 stromal cell-derived factor 2-like 1 O OTTHUMT00000075032|PWP1-interacting protein 8|SDF2-like 1|SDF2-like protein 1|dihydropyrimidinase-like 2|stromal cell-derived factor 2-like protein 1 20121230 -9606 23754 RPL32P5 - RPL32L2|RPL32_23_1737 HGNC:10338 22 22q11.1 ribosomal protein L32 pseudogene 5 pseudo RPL32P5 ribosomal protein L32 pseudogene 5 O - 20121230 -9606 23755 SIRPAP1 - PTPNS1L HGNC:9663 22 22q12.2 signal-regulatory protein alpha pseudogene 1 pseudo SIRPAP1 signal-regulatory protein alpha pseudogene 1 O - 20121230 -9606 23756 RPS24P1 - RPS24P HGNC:10412 Y Yq11.21 ribosomal protein S24 pseudogene 1 pseudo RPS24P1 ribosomal protein S24 pseudogene 1 O - 20121230 -9606 23757 ARSFP1 - ARSFP HGNC:722 Y Yq11.21 arylsulfatase F pseudogene 1 pseudo ARSFP1 arylsulfatase F pseudogene 1 O - 20121230 -9606 23758 SFPQP1 - SFPQP HGNC:10775 Y Yq11.1 splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) pseudogene 1 pseudo SFPQP1 splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) pseudogene 1 O - 20121230 -9606 23759 PPIL2 - CYC4|CYP60|Cyp-60|hCyP-60 HGNC:9261|MIM:607588|Ensembl:ENSG00000100023|HPRD:08472|Vega:OTTHUMG00000030174 22 22q11.21 peptidylprolyl isomerase (cyclophilin)-like 2 protein-coding PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 O PPIase|cyclophilin, 60kDa|cyclophilin-60|cyclophilin-like protein CyP-60|peptidyl-prolyl cis-trans isomerase-like 2|peptidylprolyl cis-trans isomerase|rotamase PPIL2 20121230 -9606 23760 PITPNB RP3-353E16.2 PI-TP-beta|PtdInsTP|VIB1B HGNC:9002|MIM:606876|Ensembl:ENSG00000180957|HPRD:06044|Vega:OTTHUMG00000150976 22 22q12.1 phosphatidylinositol transfer protein, beta protein-coding PITPNB phosphatidylinositol transfer protein, beta O PtdIns transfer protein beta|phosphatidylinositol transfer protein beta isoform|phosphotidylinositol transfer protein, beta|ptdInsTP beta 20121230 -9606 23761 PISD RP5-858B16.2 DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 HGNC:8999|MIM:612770|Ensembl:ENSG00000241878|HPRD:17854|Vega:OTTHUMG00000030252 22 22q12.2 phosphatidylserine decarboxylase protein-coding PISD phosphatidylserine decarboxylase O phosphatidylserine decarboxylase proenzyme 20121230 -9606 23762 OSBP2 RP3-430N8.7 ORP-4|ORP4|OSBPL1|OSBPL4 HGNC:8504|MIM:606729|Ensembl:ENSG00000184792|HPRD:09471|Vega:OTTHUMG00000151153 22 22q12.2 oxysterol binding protein 2 protein-coding OSBP2 oxysterol binding protein 2 O OSBP-related protein 4|oxysterol binding protein-like 1|oxysterol binding protein-related protein 4|oxysterol-binding protein 2|oxysterol-binding protein-related protein 4 20121230 -9606 23764 MAFF CTA-447C4.1 U-MAF|hMafF HGNC:6780|MIM:604877|Ensembl:ENSG00000185022|HPRD:05343|Vega:OTTHUMG00000151163 22 22q13.1 v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian) protein-coding MAFF v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian) O transcription factor MafF|v-maf avian musculoaponeurotic fibrosarcoma oncogene family protein F 20121230 -9606 23765 IL17RA - CANDF5|CD217|CDw217|IL-17RA|IL17R|hIL-17R HGNC:5985|MIM:605461|Ensembl:ENSG00000177663|HPRD:10399|Vega:OTTHUMG00000150026 22 22q11.1 interleukin 17 receptor A protein-coding IL17RA interleukin 17 receptor A O IL-17 receptor A|interleukin-17 receptor A 20121230 -9606 23766 GABARAPL3 - ATG8D HGNC:4069 15 15q26.1 GABA(A) receptors associated protein like 3, pseudogene pseudo GABARAPL3 GABA(A) receptors associated protein like 3, pseudogene O - 20121230 -9606 23767 FLRT3 UNQ856/PRO1865 - HGNC:3762|MIM:604808|Ensembl:ENSG00000125848|HPRD:05313|Vega:OTTHUMG00000031914 20 20p11 fibronectin leucine rich transmembrane protein 3 protein-coding FLRT3 fibronectin leucine rich transmembrane protein 3 O fibronectin-like domain-containing leucine-rich transmembrane protein 3|leucine-rich repeat transmembrane protein FLRT3 20121230 -9606 23768 FLRT2 UNQ232/PRO265 - HGNC:3761|MIM:604807|Ensembl:ENSG00000185070|HPRD:05312|Vega:OTTHUMG00000171372 14 14q24-q32 fibronectin leucine rich transmembrane protein 2 protein-coding FLRT2 fibronectin leucine rich transmembrane protein 2 O fibronectin-like domain-containing leucine-rich transmembrane protein 2|leucine-rich repeat transmembrane protein FLRT2 20121230 -9606 23769 FLRT1 UNQ752/PRO1483 - HGNC:3760|MIM:604806|Ensembl:ENSG00000126500|HPRD:05311|Vega:OTTHUMG00000167788 11 11q12-q13 fibronectin leucine rich transmembrane protein 1 protein-coding FLRT1 fibronectin leucine rich transmembrane protein 1 O fibronectin-like domain-containing leucine-rich transmembrane protein 1|leucine-rich repeat transmembrane protein FLRT1 20121230 -9606 23770 FKBP8 - FKBP38|FKBPr38 HGNC:3724|MIM:604840|Ensembl:ENSG00000105701|HPRD:05327 19 19p12 FK506 binding protein 8, 38kDa protein-coding FKBP8 FK506 binding protein 8, 38kDa O 38 kDa FK506-binding protein|38 kDa FKBP|FK506-binding protein 8 (38kD)|FKBP-38|FKBP-8|PPIase FKBP8|hFKBP38|peptidyl-prolyl cis-trans isomerase FKBP8|rotamase 20121230 -9606 23771 DIANPH - - HGNC:2875|MIM:603933 18 18q22.3-q23 diabetic nephropathy unknown DIANPH diabetic nephropathy O - 20110215 -9606 23772 CSF2RBP1 - CSF2RB2|fF45C1.2 HGNC:2437 22 22q13.1 colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) pseudogene 1 pseudo CSF2RBP1 colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) pseudogene 1 O - 20121230 -9606 23774 BRD1 RP3-522J7.4 BRL|BRPF1|BRPF2 HGNC:1102|MIM:604589|Ensembl:ENSG00000100425|HPRD:06848|Vega:OTTHUMG00000150288 22 22q13.33 bromodomain containing 1 protein-coding BRD1 bromodomain containing 1 O BR140-like protein|bromodomain and PHD finger-containing protein 2|bromodomain-containing protein 1 20121230 -9606 23779 ARHGAP8 - BPGAP1|PP610 HGNC:677|MIM:609405|Ensembl:ENSG00000241484|HPRD:06448|Vega:OTTHUMG00000030234 22 22q13.31 Rho GTPase activating protein 8 protein-coding ARHGAP8 Rho GTPase activating protein 8 O BCH domain-containing Cdc42GAP-like protein|BNIP-2 and Cdc42GAP homology domain-containing, proline-rich and Cdc42GAP-like protein subtype-1|rho GTPase-activating protein 8|rho-type GTPase-activating protein 8 20121230 -9606 23780 APOL2 - APOL-II|APOL3 HGNC:619|MIM:607252|Ensembl:ENSG00000128335|HPRD:06263|Vega:OTTHUMG00000150634 22 22q12 apolipoprotein L, 2 protein-coding APOL2 apolipoprotein L, 2 O apolipoprotein L-II|apolipoprotein L2 20121230 -9606 23781 AP1B1P2 - ADTB1L2|dJ127L4.3 HGNC:298 22 22q12.3 adaptor-related protein complex 1, beta 1 subunit pseudogene 2 pseudo AP1B1P2 adaptor-related protein complex 1, beta 1 subunit pseudogene 2 O - 20121230 -9606 23782 AP1B1P1 - ADTB1L1|dJ127L4.2 HGNC:297 22 22q12.3 adaptor-related protein complex 1, beta 1 subunit pseudogene 1 pseudo AP1B1P1 adaptor-related protein complex 1, beta 1 subunit pseudogene 1 O - 20121230 -9606 23783 ANKRD62P1-PARP4P3 - ADPRTL4|PARP4P3 HGNC:42393 22 22q11.1 ANKRD62P1-PARP4P3 readthrough transcribed pseudogene pseudo ANKRD62P1-PARP4P3 ANKRD62P1-PARP4P3 readthrough transcribed pseudogene O - 20121230 -9606 23784 POTEH LA16c-3G11.6 A26C3|ACTBL1|CT104.7|POTE22 HGNC:133|MIM:608913|HPRD:16403 22 22q11.1 POTE ankyrin domain family, member H protein-coding POTEH POTE ankyrin domain family, member H O ANKRD26-like family C member 3|ANKRD26-like family C, member 3|POTE ankyrin domain family member H|POTE-22|actin, beta-like 1|cancer/testis antigen family 104, member 7|prostate, ovary, testis-expressed protein on chromosome 22|protein expressed in prostate, ovary, testis, and placenta 22|protein expressed in prostate, ovary, testis, and placenta POTE14 like 20121230 -9606 23785 ABCD1P1 - - HGNC:62 2 2p11 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 1 pseudo ABCD1P1 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 1 O - 20121230 -9606 23786 BCL2L13 CD003 BCL-RAMBO|Bcl2-L-13|MIL1 HGNC:17164|Ensembl:ENSG00000099968|HPRD:09822|Vega:OTTHUMG00000150088 22 22q11.1 BCL2-like 13 (apoptosis facilitator) protein-coding BCL2L13 BCL2-like 13 (apoptosis facilitator) O bcl-2-like protein 13 20121230 -9606 23787 MTCH1 RP1-90K10.1 CGI-64|PIG60|PSAP|SLC25A49 HGNC:17586|MIM:610449|Ensembl:ENSG00000137409|HPRD:14787|Vega:OTTHUMG00000014614 6 6p21.2 mitochondrial carrier 1 protein-coding MTCH1 mitochondrial carrier 1 O cell proliferation-inducing protein 60|mitochondrial carrier homolog 1|presenilin-associated protein|solute carrier family 25, member 49 20121230 -9606 23788 MTCH2 HSPC032 MIMP|SLC25A50 HGNC:17587|MIM:613221|Ensembl:ENSG00000109919|HPRD:14788|Vega:OTTHUMG00000166926 11 11p11.2 mitochondrial carrier 2 protein-coding MTCH2 mitochondrial carrier 2 O 2310034D24Rik|met-induced mitochondrial protein|mitochondrial carrier homolog 2|solute carrier family 25, member 50 20121230 -9606 24137 KIF4A - KIF4|KIF4G1 HGNC:13339|MIM:300521|Ensembl:ENSG00000090889|HPRD:06606|Vega:OTTHUMG00000021775 X Xq13.1 kinesin family member 4A protein-coding KIF4A kinesin family member 4A O chromokinesin-A|chromosome-associated kinesin KIF4A 20121230 -9606 24138 IFIT5 - P58|RI58 HGNC:13328|Ensembl:ENSG00000152778|HPRD:17130|Vega:OTTHUMG00000018713 10 10q23.31 interferon-induced protein with tetratricopeptide repeats 5 protein-coding IFIT5 interferon-induced protein with tetratricopeptide repeats 5 O IFIT-5|interferon-induced 58 kDa protein|retinoic acid- and interferon-inducible 58 kDa protein|retinoic acid- and interferon-inducible protein (58kD) 20121230 -9606 24139 EML2 - ELP70|EMAP-2|EMAP2 HGNC:18035|Ensembl:ENSG00000125746|HPRD:16860|Vega:OTTHUMG00000182127 19 19q13.32 echinoderm microtubule associated protein like 2 protein-coding EML2 echinoderm microtubule associated protein like 2 O echinoderm MT-associated protein (EMAP)-like protein 70|echinoderm microtubule-associated protein-like 2|microtubule-associated protein like echinoderm EMAP 20121230 -9606 24140 FTSJ1 JM23 CDLIV|MRX44|MRX9|SPB1|TRM7|TRMT7 HGNC:13254|MIM:300499|Ensembl:ENSG00000068438|HPRD:06568|Vega:OTTHUMG00000024118 X Xp11.23 FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding FTSJ1 FtsJ RNA methyltransferase homolog 1 (E. coli) O FtsJ homolog 1|cell division protein|protein ftsJ homolog 1|putative ribosomal RNA methyltransferase 1|rRNA (uridine-2'-O-)-methyltransferase|tRNA methyltransferase 7 homolog 20121230 -9606 24141 LAMP5 - BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-43 HGNC:16097|MIM:614641|Ensembl:ENSG00000125869|HPRD:12736|Vega:OTTHUMG00000031851 20 20p12 lysosomal-associated membrane protein family, member 5 protein-coding LAMP5 lysosomal-associated membrane protein family, member 5 O LAMP family protein C20orf103|brain and dendritic cell associated LAMP|brain and dendritic cell-associated LAMP|brain-associated LAMP-like protein|lysosome-associated membrane glycoprotein 5|lysosome-associated membrane protein 5 20121230 -9606 24142 NAT6 - FUS-2|FUS2 HGNC:30252|MIM:607073|Ensembl:ENSG00000243477|HPRD:06148|Vega:OTTHUMG00000156939 3 3p21.3 N-acetyltransferase 6 (GCN5-related) protein-coding NAT6 N-acetyltransferase 6 (GCN5-related) O N-acetyltransferase 6|protein fusion-2 20121230 -9606 24144 TFIP11 CTA-445C9.9 NTR1|Spp382|TIP39|bK445C9.6|hNtr1 HGNC:17165|MIM:612747|Ensembl:ENSG00000100109|HPRD:11628|Vega:OTTHUMG00000150883 22 22q12.1 tuftelin interacting protein 11 protein-coding TFIP11 tuftelin interacting protein 11 O STIP-1|septin and tuftelin-interacting protein 1|tuftelin-interacting protein 11 20121230 -9606 24145 PANX1 UNQ2529/PRO6028 MRS1|PX1|UNQ2529 HGNC:8599|MIM:608420|Ensembl:ENSG00000110218|HPRD:10526|Vega:OTTHUMG00000167757 11 11q21 pannexin 1 protein-coding PANX1 pannexin 1 O innexin|pannexin-1 20121230 -9606 24146 CLDN15 - - HGNC:2036|Ensembl:ENSG00000106404|HPRD:13065|Vega:OTTHUMG00000150512 7 7q11.22 claudin 15 protein-coding CLDN15 claudin 15 O claudin-15 20121230 -9606 24147 FJX1 - - HGNC:17166|MIM:612206|Ensembl:ENSG00000179431|HPRD:16897|Vega:OTTHUMG00000166310 11 11p13 four jointed box 1 (Drosophila) protein-coding FJX1 four jointed box 1 (Drosophila) O four-jointed box protein 1|four-jointed protein homolog|putative secreted ligand homologous to fjx1 20121230 -9606 24148 PRPF6 - ANT-1|ANT1|C20orf14|Prp6|TOM|U5-102K|hPrp6 HGNC:15860|MIM:613979|Ensembl:ENSG00000101161|HPRD:10729|Vega:OTTHUMG00000033018 20 20q13.33 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) protein-coding PRPF6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) O PRP6 homolog|U5 snRNP-associated 102 kDa protein|U5-102 kDa protein|androgen receptor N-terminal domain transactivating protein-1|androgen receptor N-terminal domain-transactivating protein 1|p102 U5 small nuclear ribonucleoprotein particle-binding protein|pre-mRNA-processing factor 6|putative mitochondrial outer membrane protein import receptor 20121230 -9606 24149 ZNF318 HRIHFB2436 TZF|ZFP318 HGNC:13578|Ensembl:ENSG00000171467|HPRD:11707|Vega:OTTHUMG00000014732 6 6pter-p12.1 zinc finger protein 318 protein-coding ZNF318 zinc finger protein 318 O endocrine regulator|endocrine regulatory protein|testicular zinc finger 20121230 -9606 24150 TP53TG3 - P53TG3|TP53TG3A HGNC:30759|Ensembl:ENSG00000183632|HPRD:18215|Vega:OTTHUMG00000176507 16 16p13 TP53 target 3 protein-coding TP53TG3 TP53 target 3 O TP53-inducible gene 3 protein|TP53-target gene 3 protein|p53 target gene 3 20121230 -9606 25758 KIAA1549L hCG_1655816 C11orf41|C11orf69|G2 HGNC:24836|MIM:612297|Ensembl:ENSG00000110427|Vega:OTTHUMG00000150410 11 11p13 KIAA1549-like protein-coding KIAA1549L KIAA1549-like O UPF0606 protein C11orf41|UPF0606 protein KIAA1549L|Uncharacterized protein C11orf69 20121230 -9606 25759 SHC2 - SCK|SHCB|SLI HGNC:29869|MIM:605217|Ensembl:ENSG00000129946|Vega:OTTHUMG00000180545 19 19p13.3 SHC (Src homology 2 domain containing) transforming protein 2 protein-coding SHC2 SHC (Src homology 2 domain containing) transforming protein 2 O SH2 domain protein C2|SHC-transforming protein 2|SHC-transforming protein B|neuronal Shc adaptor homolog|protein Sck|src homology 2 domain-containing-transforming protein C2 20121230 -9606 25763 CXorf27 - HIP17|HYPM HGNC:18417|Ensembl:ENSG00000187516|Vega:OTTHUMG00000033180 X Xp21.1 chromosome X open reading frame 27 protein-coding CXorf27 chromosome X open reading frame 27 O huntingtin yeast partner M|huntingtin-interacting protein M 20121230 -9606 25764 HYPK HSPC136 C15orf63 HGNC:18418|MIM:612784|Ensembl:ENSG00000242028|HPRD:13724|Vega:OTTHUMG00000060146 15 15q15.3 huntingtin interacting protein K protein-coding HYPK huntingtin interacting protein K O huntingtin yeast partner K|huntingtin-interacting protein K 20121230 -9606 25766 PRPF40B - HYPC HGNC:25031|Ensembl:ENSG00000110844|HPRD:11044|Vega:OTTHUMG00000169568 12 12q PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) protein-coding PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) O Huntingtin interacting protein C|huntingtin yeast partner C|pre-mRNA-processing factor 40 homolog B 20121230 -9606 25769 SLC24A2 - NCKX2 HGNC:10976|MIM:609838|Ensembl:ENSG00000155886|HPRD:15351|Vega:OTTHUMG00000019646 9 9p22.1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding SLC24A2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 O Na(+)/K(+)/Ca(2+)-exchange protein 2|retinal cone Na-Ca+K exchanger|sodium/potassium/calcium exchanger 2 20121230 -9606 25770 C22orf31 - HS747E2A|bK747E2.1 HGNC:26931|Ensembl:ENSG00000100249|HPRD:11031|Vega:OTTHUMG00000151011 22 22q12.1 chromosome 22 open reading frame 31 protein-coding C22orf31 chromosome 22 open reading frame 31 O uncharacterized protein C22orf31 20121230 -9606 25771 TBC1D22A LL22NC03-65D1.1 C22orf4|HSC79E021 HGNC:1309|Ensembl:ENSG00000054611|HPRD:15474|Vega:OTTHUMG00000150332 22 22q13.3 TBC1 domain family, member 22A protein-coding TBC1D22A TBC1 domain family, member 22A O TBC1 domain family member 22A|putative GTPase activator 20121230 -9606 25774 GSTTP1 - HS322B1A HGNC:26930|HPRD:13673 22 22q12 glutathione S-transferase theta pseudogene 1 pseudo GSTTP1 glutathione S-transferase theta pseudogene 1 O - 20121230 -9606 25775 C22orf24 LL22NC03-44A4.2 HSN44A4A HGNC:23051|Ensembl:ENSG00000128254|Vega:OTTHUMG00000030834 22 22q12.1-q12.3 chromosome 22 open reading frame 24 protein-coding C22orf24 chromosome 22 open reading frame 24 O uncharacterized protein C22orf24 20121230 -9606 25776 CBY1 RP3-508I15.8 C22orf2|CBY|HS508I15A|PGEA1|PIGEA-14|PIGEA14|arb1 HGNC:1307|MIM:607757|Ensembl:ENSG00000100211|HPRD:09676|Vega:OTTHUMG00000150990 22 22q12 chibby homolog 1 (Drosophila) protein-coding CBY1 chibby homolog 1 (Drosophila) O ARPP-binding protein|PKD2 interactor, Golgi and endoplasmic reticulum-associated 1|PKD2 interactor, golgi and endoplasmic reticulum associated 1|coiled-coil protein PIGEA-14|cytosolic leucine-rich protein|polycystin-2 interactor, Golgi- and endoplasmic reticulum-associated protein, 14 kDa|protein chibby homolog 1 20121230 -9606 25777 SUN2 RP3-508I15.15-002 UNC84B HGNC:14210|MIM:613569|Ensembl:ENSG00000100242|HPRD:15611|Vega:OTTHUMG00000151031 22 22q13.1 Sad1 and UNC84 domain containing 2 protein-coding SUN2 Sad1 and UNC84 domain containing 2 O SUN domain-containing protein 2|Sad1 unc-84 domain protein 2|nuclear envelope protein|protein unc-84 homolog B|rab5-interacting protein|rab5IP|sad1/unc-84 protein-like 2|unc-84 homolog B 20121230 -9606 25778 DSTYK HDCMD38P DustyPK|RIP5|RIPK5 HGNC:29043|MIM:612666|Ensembl:ENSG00000133059|HPRD:11495|Vega:OTTHUMG00000037102 1 1q32.1 dual serine/threonine and tyrosine protein kinase protein-coding DSTYK dual serine/threonine and tyrosine protein kinase O RIP-homologous kinase|dusty PK|dusty protein kinase|receptor interacting protein 5|receptor interacting protein kinase 5|receptor-interacting serine/threonine-protein kinase 5|sgK496|sugen kinase 496 20121230 -9606 25780 RASGRP3 - GRP3 HGNC:14545|MIM:609531|Ensembl:ENSG00000152689|HPRD:15213|Vega:OTTHUMG00000152124 2 2p25.1-p24.1 RAS guanyl releasing protein 3 (calcium and DAG-regulated) protein-coding RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) O calcium and DAG-regulated guanine nucleotide exchange factor III|guanine nucleotide exchange factor for Rap1|ras guanyl-releasing protein 3 20121230 -9606 25782 RAB3GAP2 RP11-568G11.1 RAB3-GAP150|RAB3GAP150|WARBM2|p150 HGNC:17168|MIM:609275|Ensembl:ENSG00000118873|HPRD:11471|Vega:OTTHUMG00000037139 1 1q41 RAB3 GTPase activating protein subunit 2 (non-catalytic) protein-coding RAB3GAP2 RAB3 GTPase activating protein subunit 2 (non-catalytic) O RGAP-iso|rab3 GTPase-activating protein 150 kDa subunit|rab3 GTPase-activating protein non-catalytic subunit|rab3-GAP p150|rab3-GAP regulatory subunit 20121230 -9606 25784 DGCR12 - DGS-E HGNC:17225 22 22q11.21 DiGeorge syndrome critical region gene 12 unknown DGCR12 DiGeorge syndrome critical region gene 12 O - 20120508 -9606 25786 DGCR11 - DGS-D HGNC:17226 22 22q11.21 DiGeorge syndrome critical region gene 11 (non-protein coding) miscRNA DGCR11 DiGeorge syndrome critical region gene 11 (non-protein coding) O - 20121230 -9606 25787 DGCR9 - DGS-A HGNC:17227 22 22q11.21 DiGeorge syndrome critical region gene 9 miscRNA DGCR9 DiGeorge syndrome critical region gene 9 O - 20121230 -9606 25788 RAD54B hCG_2009220 RDH54 HGNC:17228|MIM:604289|Ensembl:ENSG00000197275|HPRD:05049|HPRD:09966|Vega:OTTHUMG00000133658 8 8q22.1 RAD54 homolog B (S. cerevisiae) protein-coding RAD54B RAD54 homolog B (S. cerevisiae) O DNA repair and recombination protein RAD54B 20121230 -9606 25789 TMEM59L - BSMAP|C19orf4 HGNC:13237|Ensembl:ENSG00000105696|HPRD:12709 19 19p12 transmembrane protein 59-like protein-coding TMEM59L transmembrane protein 59-like O brain-specific membrane-anchored protein 20121230 -9606 25790 CCDC19 RP11-190A12.6 NESG1 HGNC:17229|MIM:605152|Ensembl:ENSG00000213085|HPRD:05514|Vega:OTTHUMG00000035432 1 1q22 coiled-coil domain containing 19 protein-coding CCDC19 coiled-coil domain containing 19 O coiled-coil domain-containing protein 19, mitochondrial|nasopharyngeal epithelium specific protein 1 (NESG1)|nasopharyngeal epithelium-specific protein 1 20121230 -9606 25791 NGEF - ARHGEF27|EPHEXIN HGNC:7807|MIM:605991|Ensembl:ENSG00000066248|HPRD:10442|Vega:OTTHUMG00000133272 2 2q37 neuronal guanine nucleotide exchange factor protein-coding NGEF neuronal guanine nucleotide exchange factor O eph-interacting exchange protein|ephexin-1 20121230 -9606 25792 CIZ1 RP11-395P17.7 LSFR1|NP94|ZNF356 HGNC:16744|MIM:611420|Ensembl:ENSG00000148337|HPRD:13061|Vega:OTTHUMG00000020735 9 9q34.1 CDKN1A interacting zinc finger protein 1 protein-coding CIZ1 CDKN1A interacting zinc finger protein 1 O cip1-interacting zinc finger protein|nuclear protein NP94|zinc finger protein 356 20121230 -9606 25793 FBXO7 LL22NC03-28H9.2 FBX|FBX07|FBX7|PARK15|PKPS HGNC:13586|MIM:605648|Ensembl:ENSG00000100225|HPRD:07292|Vega:OTTHUMG00000030674 22 22q12-q13 F-box protein 7 protein-coding FBXO7 F-box protein 7 O F-box only protein 7 20121230 -9606 25794 FSCN2 - RFSN|RP30 HGNC:3960|MIM:607643|Ensembl:ENSG00000186765|HPRD:06366|Vega:OTTHUMG00000167477 17 17q25 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) protein-coding FSCN2 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) O fascin-2 20121230 -9606 25796 PGLS - 6PGL HGNC:8903|MIM:604951|Ensembl:ENSG00000130313|HPRD:12001 19 19p13.2 6-phosphogluconolactonase protein-coding PGLS 6-phosphogluconolactonase O - 20121230 -9606 25797 QPCT - GCT|QC|sQC HGNC:9753|MIM:607065|Ensembl:ENSG00000115828|HPRD:06140|Vega:OTTHUMG00000100963 2 2p22.2 glutaminyl-peptide cyclotransferase protein-coding QPCT glutaminyl-peptide cyclotransferase O EC|glutaminyl cyclase|glutaminyl-tRNA cyclotransferase|glutamyl cyclase 20121230 -9606 25798 BRI3 - I3 HGNC:1109|Ensembl:ENSG00000164713|HPRD:16562|Vega:OTTHUMG00000154275 7 7q21.3 brain protein I3 protein-coding BRI3 brain protein I3 O pRGR2 20121230 -9606 25799 ZNF324 - ZF5128|ZNF324A HGNC:14096|Ensembl:ENSG00000083812|HPRD:11708 19 19q13.43 zinc finger protein 324 protein-coding ZNF324 zinc finger protein 324 O zinc finger protein 324A|zinc finger protein ZF5128 20121230 -9606 25800 SLC39A6 - LIV-1 HGNC:18607|MIM:608731|Ensembl:ENSG00000141424|HPRD:12285|Vega:OTTHUMG00000178965 18 18q12.2 solute carrier family 39 (zinc transporter), member 6 protein-coding SLC39A6 solute carrier family 39 (zinc transporter), member 6 O LIV-1 protein, estrogen regulated|ZIP-6|estrogen-regulated protein LIV-1|solute carrier family 39 (metal ion transporter), member 6|solute carrier family 39 member 6|zinc transporter ZIP6|zrt- and Irt-like protein 6 20121230 -9606 25801 GCA - GCL HGNC:15990|MIM:607030|Ensembl:ENSG00000115271|HPRD:06122|Vega:OTTHUMG00000132057 2 2q24.2 grancalcin, EF-hand calcium binding protein protein-coding GCA grancalcin, EF-hand calcium binding protein O grancalcin|grancalcin, EF-hand calcium-binding protein|grancalcin, penta-EF-hand protein 20121230 -9606 25802 LMOD1 - 1D|64kD|D1|SM-LMOD HGNC:6647|MIM:602715|Ensembl:ENSG00000163431|HPRD:04093|Vega:OTTHUMG00000035802 1 1q32 leiomodin 1 (smooth muscle) protein-coding LMOD1 leiomodin 1 (smooth muscle) O 64 kDa autoantigen 1D|64 kDa autoantigen 1D3|64 kDa autoantigen D1|leimodin 1 (smooth muscle)|leiomodin, muscle form|leiomodin-1|smooth muscle leiomodin|thyroid and eye muscle autoantigen D1 (64kD)|thyroid-associated ophthalmopathy autoantigen 20121230 -9606 25803 SPDEF - PDEF|RP11-375E1__A.3|bA375E1.3 HGNC:17257|MIM:608144|Ensembl:ENSG00000124664|HPRD:12176|Vega:OTTHUMG00000014548 6 6p21.3 SAM pointed domain containing ets transcription factor protein-coding SPDEF SAM pointed domain containing ets transcription factor O SAM pointed domain-containing Ets transcription factor|prostate epithelium-specific Ets transcription factor|prostate-derived Ets factor|prostate-specific Ets 20121230 -9606 25804 LSM4 - GRP|YER112W HGNC:17259|MIM:607284|Ensembl:ENSG00000130520|HPRD:06284 19 19p13.11 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) O U6 snRNA-associated Sm-like protein LSm4|glycine-rich protein 20121230 -9606 25805 BAMBI - NMA HGNC:30251|MIM:604444|Ensembl:ENSG00000095739|HPRD:05117|Vega:OTTHUMG00000017874 10 10p12.3-p11.2 BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) protein-coding BAMBI BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) O BMP and activin membrane-bound inhibitor homolog|non-metastatic gene A protein|putative transmembrane protein NMA 20121230 -9606 25806 VAX2 - DRES93 HGNC:12661|MIM:604295|Ensembl:ENSG00000116035|HPRD:05051|Vega:OTTHUMG00000129714 2 2p13 ventral anterior homeobox 2 protein-coding VAX2 ventral anterior homeobox 2 O - 20121230 -9606 25807 RHBDD3 CTA-984G1.4 C22orf3|HS984G1A|PTAG HGNC:1308|Ensembl:ENSG00000100263|HPRD:12800|Vega:OTTHUMG00000151032 22 22q12.2 rhomboid domain containing 3 protein-coding RHBDD3 rhomboid domain containing 3 O pituitary tumor apoptosis|rhomboid domain-containing protein 3 20121230 -9606 25809 TTLL1 - C22orf7|HS323M22B HGNC:1312|MIM:608955|Ensembl:ENSG00000100271|HPRD:10604|Vega:OTTHUMG00000150699 22 22q13.1 tubulin tyrosine ligase-like family, member 1 protein-coding TTLL1 tubulin tyrosine ligase-like family, member 1 O PGs3|catalytic subunit of neural tubulin polyglutamylase|probable tubulin polyglutamylase TTLL1|tubulin polyglutamylase complex subunit 3|tubulin--tyrosine ligase-like protein 1|tubulin-tyrosine ligase 20121230 -9606 25812 POM121L1P - POM121L1 HGNC:16439 22 22q11.22 POM121 transmembrane nucleoporin-like 1, pseudogene pseudo POM121L1P POM121 transmembrane nucleoporin-like 1, pseudogene O - 20121230 -9606 25813 SAMM50 CGI-51 OMP85|SAM50|TOB55|TRG-3|YNL026W HGNC:24276|MIM:612058|Ensembl:ENSG00000100347|HPRD:10826|Vega:OTTHUMG00000150557 22 22q13.31 sorting and assembly machinery component 50 homolog (S. cerevisiae) protein-coding SAMM50 sorting and assembly machinery component 50 homolog (S. cerevisiae) O sorting and assembly machinery 50kDa|sorting and assembly machinery component 50 homolog|transformation-related gene 3 protein 20121230 -9606 25814 ATXN10 RP1-37M3.7 E46L|HUMEEP|SCA10 HGNC:10549|MIM:611150|Ensembl:ENSG00000130638|HPRD:04624|Vega:OTTHUMG00000150451 22 22q13.31 ataxin 10 protein-coding ATXN10 ataxin 10 O ataxin-10|brain protein E46 homolog|spinocerebellar ataxia type 10 protein 20121230 -9606 25816 TNFAIP8 - GG2-1|MDC-3.13|SCC-S2|SCCS2 HGNC:17260|MIM:612111|Ensembl:ENSG00000145779|HPRD:18204|Vega:OTTHUMG00000162949 5 5q23.1 tumor necrosis factor, alpha-induced protein 8 protein-coding TNFAIP8 tumor necrosis factor, alpha-induced protein 8 O NDED|NF-kappa-B-inducible DED-containing protein|TNF alpha-induced protein 8|TNF-induced protein GG2-1|head and neck tumor and metastasis-related protein|tumor necrosis factor alpha-induced protein 8 20121230 -9606 25817 FAM19A5 CITF22-113D11.1 QLLK5208|TAFA-5|TAFA5|UNQ5208 HGNC:21592|Ensembl:ENSG00000219438|HPRD:13295|Vega:OTTHUMG00000150308 22 22q13.32 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 protein-coding FAM19A5 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 O TAFA protein 5|chemokine-like protein TAFA-5|protein FAM19A5 20121230 -9606 25818 KLK5 UNQ570/PRO1132 KLK-L2|KLKL2|SCTE HGNC:6366|MIM:605643|Ensembl:ENSG00000167754|HPRD:05732 19 19q13.33 kallikrein-related peptidase 5 protein-coding KLK5 kallikrein-related peptidase 5 O kallikrein 5|kallikrein-5|kallikrein-like protein 2|stratum corneum tryptic enzyme 20121230 -9606 25819 CCRN4L - CCR4L|NOC HGNC:14254|MIM:608468|Ensembl:ENSG00000151014|HPRD:16337|Vega:OTTHUMG00000161271 4 4q31.1 CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein-coding CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) O CCR4 protein homolog|CCR4-like (carbon catabolite repression 4, S.cerevisiae)|nocturnin 20121230 -9606 25820 ARIH1 HUSSY-27 ARI|HARI|HHARI|UBCH7BP HGNC:689|MIM:605624|Ensembl:ENSG00000166233|HPRD:05730|Vega:OTTHUMG00000133474 15 15q24 ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) protein-coding ARIH1 ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) O ARI-1|E3 ubiquitin-protein ligase ARIH1|H7-AP2|MOP-6|ariadne, Drosophila, homolog of|monocyte protein 6|protein ariadne-1 homolog|ubcH7-binding protein|ubcM4-interacting protein|ubiquitin-conjugating enzyme E2-binding protein 1 20121230 -9606 25821 MTO1 CGI-02 COXPD10 HGNC:19261|MIM:614667|Ensembl:ENSG00000135297|HPRD:17611|Vega:OTTHUMG00000015032 6 6q13 mitochondrial translation optimization 1 homolog (S. cerevisiae) protein-coding MTO1 mitochondrial translation optimization 1 homolog (S. cerevisiae) O homolog of yeast Mto1|mitochondrial MTO1-3|protein MTO1 homolog, mitochondrial 20121230 -9606 25822 DNAJB5 RP11-392A14.5 Hsc40 HGNC:14887|MIM:611328|Ensembl:ENSG00000137094|Vega:OTTHUMG00000019840 9 9p13.3 DnaJ (Hsp40) homolog, subfamily B, member 5 protein-coding DNAJB5 DnaJ (Hsp40) homolog, subfamily B, member 5 O dnaJ homolog subfamily B member 5|heat shock cognate 40|heat shock protein Hsp40-2|heat shock protein Hsp40-3|heat shock protein cognate 40 20121230 -9606 25823 TPSG1 - PRSS31|TMT|trpA HGNC:14134|MIM:609341|Ensembl:ENSG00000116176|HPRD:07160|Vega:OTTHUMG00000090466 16 16p13.3 tryptase gamma 1 protein-coding TPSG1 tryptase gamma 1 O gamma I|gamma II|lung tryptase|mast cell protease II|mast cell tryptase|pituitary tryptase|serine protease 31|skin tryptase|transmembrane tryptase|tryptase gamma|tryptase gamma I|tryptase gamma II 20121230 -9606 25824 PRDX5 SBBI10 ACR1|AOEB166|B166|PLP|PMP20|PRDX6|PRXV HGNC:9355|MIM:606583|Ensembl:ENSG00000126432|HPRD:05958|Vega:OTTHUMG00000168805 11 11q13 peroxiredoxin 5 protein-coding PRDX5 peroxiredoxin 5 O Alu co-repressor 1|TPx type VI|alu corepressor 1|antioxidant enzyme B166|liver tissue 2D-page spot 71B|peroxiredoxin V|peroxiredoxin-5, mitochondrial|peroxisomal antioxidant enzyme|prx-V|thioredoxin peroxidase PMP20|thioredoxin reductase 20121230 -9606 25825 BACE2 CDA13 AEPLC|ALP56|ASP1|ASP21|BAE2|CEAP1|DRAP HGNC:934|MIM:605668|Ensembl:ENSG00000182240|HPRD:05744|Vega:OTTHUMG00000086742 21 21q22.3 beta-site APP-cleaving enzyme 2 protein-coding BACE2 beta-site APP-cleaving enzyme 2 O 56 kDa aspartic-like protease|Down syndrome region aspartic protease|asp 1|aspartic-like protease 56 kDa|aspartyl protease 1|beta secretase 2|beta-secretase 2|beta-site APP cleaving enzyme 2|beta-site amyloid beta A4 precursor protein-cleaving enzyme 2|beta-site amyloid precursor protein cleaving enzyme 2|down region aspartic protease|memapsin-1|membrane-associated aspartic protease 1|theta-secretase|transmembrane aspartic proteinase Asp1 20121230 -9606 25826 SNORD82 - RNU82|U82|Z25 HGNC:10240|MIM:611133 2 2q37.1 small nucleolar RNA, C/D box 82 snoRNA SNORD82 small nucleolar RNA, C/D box 82 O - 20121230 -9606 25827 FBXL2 - FBL2|FBL3 HGNC:13598|MIM:605652|Ensembl:ENSG00000153558|HPRD:05736|Vega:OTTHUMG00000130745 3 3p22.3 F-box and leucine-rich repeat protein 2 protein-coding FBXL2 F-box and leucine-rich repeat protein 2 O F-box protein FBL2/FBL3|F-box protein containing leucine-rich repeats|F-box/LRR-repeat protein 2 20121230 -9606 25828 TXN2 RP5-1119A7.13-005 MT-TRX|MTRX|TRX2 HGNC:17772|MIM:609063|Ensembl:ENSG00000100348|HPRD:07161|Vega:OTTHUMG00000150596 22 22q13.1 thioredoxin 2 protein-coding TXN2 thioredoxin 2 O mitochondrial thioredoxin|thioredoxin, mitochondrial|thioredoxin-2 20121230 -9606 25829 TMEM184B CTA-447C4.2 C22orf5|FM08|HS5O6A HGNC:1310|Ensembl:ENSG00000198792|HPRD:12801|Vega:OTTHUMG00000030557 22 22q12 transmembrane protein 184B protein-coding TMEM184B transmembrane protein 184B O putative MAPK-activating protein FM08 20121230 -9606 25830 SULT4A1 - BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 HGNC:14903|MIM:608359|Ensembl:ENSG00000130540|HPRD:07462|Vega:OTTHUMG00000141314 22 22q13.2 sulfotransferase family 4A, member 1 protein-coding SULT4A1 sulfotransferase family 4A, member 1 O ST4A1|brain sulfotransferase-like protein|hBR-STL|nervous system cytosolic sulfotransferase|nervous system sulfotransferase|sulfotransferase 4A1|sulfotransferase-related protein 20121230 -9606 25831 HECTD1 - - HGNC:20157|Ensembl:ENSG00000092148|HPRD:17098|Vega:OTTHUMG00000170670 14 14q12 HECT domain containing E3 ubiquitin protein ligase 1 protein-coding HECTD1 HECT domain containing E3 ubiquitin protein ligase 1 O E3 ligase for inhibin receptor|E3 ubiquitin-protein ligase HECTD1|EULIR|HECT domain containing 1|HECT domain-containing protein 1 20121230 -9606 25832 NBPF14 RP3-328E19.1 DJ328E19.C1.1|NBPF HGNC:25232|MIM:614003|Ensembl:ENSG00000122497|HPRD:13148|Vega:OTTHUMG00000013900 1 1q21.1 neuroblastoma breakpoint family, member 14 protein-coding NBPF14 neuroblastoma breakpoint family, member 14 O AE5|neuroblastoma breakpoint family member 14 20121230 -9606 25833 POU2F3 - Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a HGNC:19864|MIM:607394|Ensembl:ENSG00000137709|HPRD:09582|Vega:OTTHUMG00000166140 11 11q23.3 POU class 2 homeobox 3 protein-coding POU2F3 POU class 2 homeobox 3 O POU domain transcription factor OCT11a|POU domain, class 2, transcription factor 3|octamer-binding protein 11|octamer-binding transcription factor 11|transcription factor PLA-1|transcription factor Skn-1 20121230 -9606 25834 MGAT4C - GNTIVH|HGNT-IV-H HGNC:30871|MIM:607385|Ensembl:ENSG00000182050|HPRD:09575|Vega:OTTHUMG00000169846 12 12q21 mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) protein-coding MGAT4C mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) O N-acetylglucosaminyltransferase IV homolog|N-acetylglucosaminyltransferase IVc|N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVc|UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IVc|UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IV|UDP-N-acetylglucosamine:a-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IV-homolog|alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C|glcNAc-T IVc|gnT-IVc 20121230 -9606 25836 NIPBL - CDLS|CDLS1|IDN3|IDN3-B|Scc2 HGNC:28862|MIM:608667|Ensembl:ENSG00000164190|HPRD:10560|Vega:OTTHUMG00000090795 5 5p13.2 Nipped-B homolog (Drosophila) protein-coding NIPBL Nipped-B homolog (Drosophila) O SCC2 homolog|delangin|nipped-B-like protein|sister chromatid cohesion 2 homolog 20121230 -9606 25837 RAB26 - V46133 HGNC:14259|MIM:605455|Ensembl:ENSG00000167964|HPRD:05676|Vega:OTTHUMG00000128829 16 16p13.3 RAB26, member RAS oncogene family protein-coding RAB26 RAB26, member RAS oncogene family O Ras-related oncogene protein|ras-related protein Rab-26 20121230 -9606 25839 COG4 - CDG2J|COD1 HGNC:18620|MIM:606976|Ensembl:ENSG00000103051|HPRD:08444|Vega:OTTHUMG00000128515 16 16q22.1 component of oligomeric golgi complex 4 protein-coding COG4 component of oligomeric golgi complex 4 O COG complex subunit 4|complexed with Dor1p|conserved oligomeric Golgi complex protein 4|conserved oligomeric Golgi complex subunit 4 20121230 -9606 25840 METTL7A PRO0066 AAM-B HGNC:24550|Ensembl:ENSG00000185432|HPRD:13179 12 12q13.12 methyltransferase like 7A protein-coding METTL7A methyltransferase like 7A O methyltransferase-like protein 7A|protein AAM-B 20121230 -9606 25841 ABTB2 RP1-53C18.4 - HGNC:23842|Ensembl:ENSG00000166016|HPRD:10624|Vega:OTTHUMG00000044382 11 11p13 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 O ankyrin repeat and BTB/POZ domain-containing protein 2 20121230 -9606 25842 ASF1A RP3-329L24.1 CGI-98|CIA|HSPC146 HGNC:20995|MIM:609189|Ensembl:ENSG00000111875|HPRD:16459|Vega:OTTHUMG00000015470 6 6q22.31 ASF1 anti-silencing function 1 homolog A (S. cerevisiae) protein-coding ASF1A ASF1 anti-silencing function 1 homolog A (S. cerevisiae) O CCG1-interacting factor A|anti-silencing function 1A|anti-silencing function protein 1 homolog A|hAsf1|hAsf1a|hCIA|histone chaperone ASF1A 20121230 -9606 25843 MOB4 CGI-95 2C4D|MOB1|MOB3|MOBKL3|PHOCN|PREI3 HGNC:17261|MIM:609361|Ensembl:ENSG00000115540|HPRD:10165|Vega:OTTHUMG00000132748 2 2q33.1 MOB family member 4, phocein protein-coding MOB4 MOB family member 4, phocein O MOB-like protein phocein|MOB1, Mps One Binder kinase activator-like 3|Mps One Binder kinase activator-like 3|class II mMOB1|mob1 homolog 3|phocein, Mob-like protein|preimplantation protein 3 20121230 -9606 25844 YIPF3 RP3-337H4.3 C6orf109|FinGER3|KLIP1|dJ337H4.3 HGNC:21023|MIM:609775|Ensembl:ENSG00000137207|HPRD:09852|Vega:OTTHUMG00000014738 6 6p21.1 Yip1 domain family, member 3 protein-coding YIPF3 Yip1 domain family, member 3 O killer lineage protein 1|natural killer cell-specific antigen KLIP1|protein YIPF3 20121230 -9606 25845 PP7080 - - - 5 5p15.33 uncharacterized LOC25845 miscRNA - - - - 20121230 -9606 25847 ANAPC13 - APC13|SWM1 HGNC:24540|MIM:614484|Ensembl:ENSG00000129055|HPRD:08531|Vega:OTTHUMG00000159803 3 3q22.2 anaphase promoting complex subunit 13 protein-coding ANAPC13 anaphase promoting complex subunit 13 O anaphase-promoting complex subunit 13|cyclosome subunit 13 20121230 -9606 25849 PARM1 UNQ1879/PRO4322 Cipar1|DKFZP564O0823|PARM-1|WSC4 HGNC:24536|Ensembl:ENSG00000169116|HPRD:08529|Vega:OTTHUMG00000160827 4 4q13.3-q21.3 prostate androgen-regulated mucin-like protein 1 protein-coding PARM1 prostate androgen-regulated mucin-like protein 1 O WSC4, cell wall integrity and stress response component 4 homolog|castration-induced prostatic apoptosis-related protein 1|prostatic androgen-regulated mucin-like protein 1|prostatic androgen-repressed message 1|prostatic androgen-repressed message-1 20121230 -9606 25850 ZNF345 - HZF10 HGNC:16367|Ensembl:ENSG00000251247|HPRD:10330|Vega:OTTHUMG00000048162 19 19q13.12 zinc finger protein 345 protein-coding ZNF345 zinc finger protein 345 O zinc finger protein HZF10 20121230 -9606 25851 TECPR1 - - HGNC:22214|MIM:614781|Ensembl:ENSG00000205356|HPRD:08521|Vega:OTTHUMG00000154273 7 7q21.3 tectonin beta-propeller repeat containing 1 protein-coding TECPR1 tectonin beta-propeller repeat containing 1 O tectonin beta-propeller repeat-containing protein 1 20121230 -9606 25852 ARMC8 S863-2 GID5|HSPC056|VID28 HGNC:24999|Ensembl:ENSG00000114098|HPRD:09992|Vega:OTTHUMG00000159821 3 3q22.3 armadillo repeat containing 8 protein-coding ARMC8 armadillo repeat containing 8 O GID complex subunit 5, VID28 homolog|armadillo repeat-containing protein 8 20121230 -9606 25853 DCAF12 - CT102|KIAA1892|TCC52|WDR40A HGNC:19911|Ensembl:ENSG00000198876|HPRD:10031|Vega:OTTHUMG00000019806 9 9p13.3 DDB1 and CUL4 associated factor 12 protein-coding DCAF12 DDB1 and CUL4 associated factor 12 O DDB1- and CUL4-associated factor 12|WD repeat domain 40A|WD repeat-containing protein 40A|cancer/testis antigen 102|centrosome-related protein TCC52|testis cancer centrosome-related protein 20121230 -9606 25854 FAM149A MST119 MSTP119 HGNC:24527|Ensembl:ENSG00000109794|HPRD:16810|Vega:OTTHUMG00000160565 4 4q35.1 family with sequence similarity 149, member A protein-coding FAM149A family with sequence similarity 149, member A O protein FAM149A 20121230 -9606 25855 BRMS1 - - HGNC:17262|MIM:606259|Ensembl:ENSG00000174744|HPRD:05879|Vega:OTTHUMG00000167081 11 11q13-q13.2 breast cancer metastasis suppressor 1 protein-coding BRMS1 breast cancer metastasis suppressor 1 O breast cancer metastasis-suppressor 1 20121230 -9606 25858 C11orf20 - - HGNC:19231|Ensembl:ENSG00000219435|Vega:OTTHUMG00000167820 11 11q13.1 chromosome 11 open reading frame 20 protein-coding C11orf20 chromosome 11 open reading frame 20 O uncharacterized protein C11orf20 20121230 -9606 25859 PART1 - NCRNA00206 HGNC:17263|MIM:604991|HPRD:09230 5 5q12.1 prostate androgen-regulated transcript 1 (non-protein coding) miscRNA PART1 prostate androgen-regulated transcript 1 (non-protein coding) O - 20121230 -9606 25861 DFNB31 RP11-9M16.1 CIP98|USH2D|WHRN|WI HGNC:16361|MIM:607928|Ensembl:ENSG00000095397|HPRD:09718|Vega:OTTHUMG00000020539 9 9q32 deafness, autosomal recessive 31 protein-coding DFNB31 deafness, autosomal recessive 31 O CASK-interacting protein CIP98|autosomal recessive deafness type 31 protein|whirlin 20121230 -9606 25862 USP49 RP11-298J23.4 - HGNC:20078|Ensembl:ENSG00000164663|HPRD:10075|Vega:OTTHUMG00000014688 6 6p21 ubiquitin specific peptidase 49 protein-coding USP49 ubiquitin specific peptidase 49 O deubiquitinating enzyme 49|ubiquitin carboxyl-terminal hydrolase 49|ubiquitin specific protease 49|ubiquitin thioesterase 49|ubiquitin thiolesterase 49|ubiquitin-specific-processing protease 49 20121230 -9606 25864 ABHD14A UNQ1913/PRO4373 DORZ1 HGNC:24538|Ensembl:ENSG00000248487|HPRD:08530|Vega:OTTHUMG00000157818 3 3p21.1 abhydrolase domain containing 14A protein-coding ABHD14A abhydrolase domain containing 14A O abhydrolase domain-containing protein 14A 20121230 -9606 25865 PRKD2 HSPC187 PKD2|nPKC-D2 HGNC:17293|MIM:607074|Ensembl:ENSG00000105287|HPRD:09523 19 19q13.3 protein kinase D2 protein-coding PRKD2 protein kinase D2 O serine/threonine-protein kinase D2 20121230 -9606 25870 SUMF2 PSEC0171 pFGE HGNC:20415|MIM:607940|Ensembl:ENSG00000129103|HPRD:06400|Vega:OTTHUMG00000129373 7 7q11.1 sulfatase modifying factor 2 protein-coding SUMF2 sulfatase modifying factor 2 O C-alpha-formyglycine-generating enzyme 2|C-alpha-formylglycine-generating enzyme 2|paralog of the formylglycine-generating enzyme|sulfatase-modifying factor 2 20121230 -9606 25871 C3orf17 - NET17 HGNC:24496|Ensembl:ENSG00000163608|HPRD:08524|Vega:OTTHUMG00000159286 3 3q13.2 chromosome 3 open reading frame 17 protein-coding C3orf17 chromosome 3 open reading frame 17 O uncharacterized protein C3orf17 20121230 -9606 25873 RPL36 - L36 HGNC:13631|Ensembl:ENSG00000130255|HPRD:10201|Vega:OTTHUMG00000178585 19 19p13.3 ribosomal protein L36 protein-coding RPL36 ribosomal protein L36 O 60S ribosomal protein L36 20121230 -9606 25874 MPC2 RP1-295C6.1 BRP44 HGNC:24515|MIM:614737|Ensembl:ENSG00000143158|HPRD:08525|Vega:OTTHUMG00000034570 1 1q24 mitochondrial pyruvate carrier 2 protein-coding MPC2 mitochondrial pyruvate carrier 2 O brain protein 44 20121230 -9606 25875 LETMD1 - 1110019O13Rik|HCCR-1|HCCR-2|HCCR1|HCRR-2 HGNC:24241|Ensembl:ENSG00000050426|HPRD:09978|Vega:OTTHUMG00000169538 12 12q13.12 LETM1 domain containing 1 protein-coding LETMD1 LETM1 domain containing 1 O LETM1 domain-containing protein 1|cervical cancer 1 proto-oncogene protein p40|cervical cancer proto-oncogene 2 protein|regulator of TP53 20121230 -9606 25876 SPEF1 RP5-1009E24.5 C20orf28|CLAMP|SPEF1A HGNC:15874|MIM:610674|Ensembl:ENSG00000101222|HPRD:09839|Vega:OTTHUMG00000031756 20 20pter-q11.23 sperm flagellar 1 protein-coding SPEF1 sperm flagellar 1 O calponin-homology and microtubule-associated protein|sperm flagellar protein 1 20121230 -9606 25878 MXRA5 - - HGNC:7539|Ensembl:ENSG00000101825|HPRD:06456|Vega:OTTHUMG00000021083 X Xp22.33 matrix-remodelling associated 5 protein-coding MXRA5 matrix-remodelling associated 5 O adhesion protein with leucine-rich repeats and Immunoglobulin domains related to perlecan|adlican|matrix-remodeling-associated protein 5 20121230 -9606 25879 DCAF13 HSPC064 GM83|WDSOF1 HGNC:24535|Ensembl:ENSG00000164934|HPRD:08528|Vega:OTTHUMG00000164888 8 8q22.3 DDB1 and CUL4 associated factor 13 protein-coding DCAF13 DDB1 and CUL4 associated factor 13 O DDB1- and CUL4-associated factor 13|WD repeat and SOF domain-containing protein 1|WD repeats and SOF1 domain containing 20121230 -9606 25880 TMEM186 - C16orf51 HGNC:24530|Ensembl:ENSG00000184857|HPRD:08527|Vega:OTTHUMG00000129696 16 16p13.2 transmembrane protein 186 protein-coding TMEM186 transmembrane protein 186 O - 20121230 -9606 25884 CHRDL2 UNQ765/PRO1557 BNF1|CHL2|FKSG37 HGNC:24168|MIM:613127|Ensembl:ENSG00000054938|HPRD:09881|Vega:OTTHUMG00000165623 11 11q14 chordin-like 2 protein-coding CHRDL2 chordin-like 2 O BNF-1|breast tumor novel factor 1|chordin-like protein 2|chordin-related protein 2 20121230 -9606 25885 POLR1A - A190|RPA1|RPA194|RPO1-4|RPO14 HGNC:17264|Ensembl:ENSG00000068654|HPRD:10161|Vega:OTTHUMG00000153165 2 2p11.2 polymerase (RNA) I polypeptide A, 194kDa protein-coding POLR1A polymerase (RNA) I polypeptide A, 194kDa O DNA-directed RNA polymerase I largest subunit|DNA-directed RNA polymerase I subunit A|DNA-directed RNA polymerase I subunit A1|DNA-directed RNA polymerase I subunit RPA1|RNA polymerase I 194 kDa subunit|RNA polymerase I subunit A1 20121230 -9606 25886 POC1A - PIX2|SOFT|WDR51A HGNC:24488|MIM:614783|Ensembl:ENSG00000164087|HPRD:08523|Vega:OTTHUMG00000157817 3 3p21.2 POC1 centriolar protein homolog A (Chlamydomonas) protein-coding POC1A POC1 centriolar protein homolog A (Chlamydomonas) O POC1 centriolar protein homolog A|WD repeat domain 51A|WD repeat-containing protein 51A 20121230 -9606 25888 ZNF473 - HZFP100|ZN473 HGNC:23239|Ensembl:ENSG00000142528|HPRD:11721 19 19q13.33 zinc finger protein 473 protein-coding ZNF473 zinc finger protein 473 O zfp-100|zinc finger protein 100 homolog|zinc finger protein ZFP100 20121230 -9606 25890 ABI3BP - NESHBP|TARSH HGNC:17265|MIM:606279|Ensembl:ENSG00000154175|HPRD:09380|Vega:OTTHUMG00000159094 3 3q12 ABI family, member 3 (NESH) binding protein protein-coding ABI3BP ABI family, member 3 (NESH) binding protein O ABI gene family member 3-binding protein|ABI gene family, member 3 (NESH) binding protein|nesh-binding protein|target of Nesh-SH3 20121230 -9606 25891 PAMR1 FP938 DKFZP586H2123|RAMP HGNC:24554|Ensembl:ENSG00000149090|HPRD:07104|Vega:OTTHUMG00000166328 11 11p13 peptidase domain containing associated with muscle regeneration 1 protein-coding PAMR1 peptidase domain containing associated with muscle regeneration 1 O inactive serine protease PAMR1|peptidase domain-containing protein associated with muscle regeneration 1|regeneration associated muscle protease|regeneration-associated muscle protease homolog 20121230 -9606 25893 TRIM58 - BIA2 HGNC:24150|Ensembl:ENSG00000162722|HPRD:09825|Vega:OTTHUMG00000040203 1 1q44 tripartite motif containing 58 protein-coding TRIM58 tripartite motif containing 58 O tripartite motif-containing 58|tripartite motif-containing protein 58 20121230 -9606 25894 PLEKHG4 - ARHGEF44|PRTPHN1|SCA4 HGNC:24501|MIM:609526|Ensembl:ENSG00000196155|HPRD:10890|Vega:OTTHUMG00000172936 16 16q22.1 pleckstrin homology domain containing, family G (with RhoGef domain) member 4 protein-coding PLEKHG4 pleckstrin homology domain containing, family G (with RhoGef domain) member 4 O PH domain-containing family G member 4|Purkinje cell atrophy associated protein 1|Purkinje cell atrophy-associated protein 1|pleckstrin homology domain-containing family G member 4|puratrophin-1 20121230 -9606 25895 METTL21B - FAM119B HGNC:24936|Ensembl:ENSG00000123427|HPRD:08532|Vega:OTTHUMG00000170459 12 12q14.1 methyltransferase like 21B protein-coding METTL21B methyltransferase like 21B O family with sequence similarity 119, member B|hepatocellular carcinoma-associated antigen 557a|hepatocellularcarcinoma-associated antigen HCA557a|methyltransferase-like protein 21B 20121230 -9606 25896 INTS7 - C1orf73|INT7 HGNC:24484|MIM:611350|Ensembl:ENSG00000143493|HPRD:08522|Vega:OTTHUMG00000037119 1 1q32.3 integrator complex subunit 7 protein-coding INTS7 integrator complex subunit 7 O - 20121230 -9606 25897 RNF19A - DORFIN|RNF19 HGNC:13432|MIM:607119|Ensembl:ENSG00000034677|HPRD:06176|Vega:OTTHUMG00000164707 8 8q22 ring finger protein 19A, E3 ubiquitin protein ligase protein-coding RNF19A ring finger protein 19A, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RNF19A|RING finger protein 19 isoform|double ring-finger protein|p38 protein|protein p38 interacting with transcription factor Sp1|ring-IBR-ring domain containing protein Dorfin 20121230 -9606 25898 RCHY1 - ARNIP|CHIMP|PIRH2|PIRH2E|PIRH2F|PRO1996|RNF199|ZNF363|hARNIP HGNC:17479|MIM:607680|Ensembl:ENSG00000163743|HPRD:07607|Vega:OTTHUMG00000130105 4 4q21.1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase protein-coding RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase O CH-rich interacting match with PLAG1|E3 ubiquitin-protein ligase Pirh2|RING finger and CHY zinc finger domain-containing protein 1|RING finger protein 199|androgen-receptor N-terminal-interacting protein|hPirh2|p53-induced RING-H2 protein|p53-induced protein with a RING-H2 domain|zinc finger protein 363 20121230 -9606 25900 IFFO1 - HOM-TES-103|IFFO HGNC:24970|MIM:610495|Ensembl:ENSG00000010295|HPRD:09988|Vega:OTTHUMG00000141264 12 12p13.3 intermediate filament family orphan 1 protein-coding IFFO1 intermediate filament family orphan 1 O intermediate filament-like MGC:2625 20121230 -9606 25901 CCDC28A RP3-509I19.10-001 C6orf80|CCRL1AP HGNC:21098|Ensembl:ENSG00000024862|HPRD:09857|Vega:OTTHUMG00000015683 6 6q23.1-q24.1 coiled-coil domain containing 28A protein-coding CCDC28A coiled-coil domain containing 28A O chemokine C-C motif receptor-like 1 adjacent|coiled-coil domain-containing protein 28A 20121230 -9606 25902 MTHFD1L RP1-292B18.2 FTHFSDC1|MTC1THFS|dJ292B18.2 HGNC:21055|MIM:611427|Ensembl:ENSG00000120254|HPRD:09967|Vega:OTTHUMG00000015828 6 6q25.1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like O 10-formyl-THF synthetase|formyltetrahydrofolate synthetase domain containing 1|monofunctional C1-tetrahydrofolate synthase, mitochondrial 20121230 -9606 25903 OLFML2B - RP11-227F8.1 HGNC:24558|Ensembl:ENSG00000162745|HPRD:14877|Vega:OTTHUMG00000024047 1 1q23.3 olfactomedin-like 2B protein-coding OLFML2B olfactomedin-like 2B O olfactomedin-like protein 2B|photomedin-2 20121230 -9606 25904 CNOT10 - - HGNC:23817|Ensembl:ENSG00000182973|HPRD:16731|Vega:OTTHUMG00000130748 3 3p22.3 CCR4-NOT transcription complex, subunit 10 protein-coding CNOT10 CCR4-NOT transcription complex, subunit 10 O CCR4-NOT transcription complex subunit 10 20121230 -9606 25906 ANAPC15 HSPC020 APC15|C11orf51 HGNC:24531|MIM:614717|Ensembl:ENSG00000110200|HPRD:13172|Vega:OTTHUMG00000167865 11 11q13.4 anaphase promoting complex subunit 15 protein-coding ANAPC15 anaphase promoting complex subunit 15 O anaphase-promoting complex subunit 15 20121230 -9606 25907 TMEM158 - BBP|RIS1|p40BBP HGNC:30293|Ensembl:ENSG00000249992|HPRD:15252|Vega:OTTHUMG00000160317 3 3p21.3 transmembrane protein 158 (gene/pseudogene) protein-coding TMEM158 transmembrane protein 158 (gene/pseudogene) O 40 kDa BINP-binding protein|BINP receptor|Ras induced senescence 1|brain injury-derived neurotrophic peptide (BINP) binding protein|brain specific binding protein|transmembrane protein 158 20121230 -9606 25909 AHCTF1 MSTP108 ELYS|MST108|TMBS62 HGNC:24618|MIM:610853|Ensembl:ENSG00000153207|HPRD:09935|Vega:OTTHUMG00000040706 1 1q44 AT hook containing transcription factor 1 protein-coding AHCTF1 AT hook containing transcription factor 1 O ELYS transcription factor like protein TMBS62|ELYS transcription factor-like protein TMBS62|embryonic large molecule derived from yolk sac|protein ELYS|putative AT-hook-containing transcription factor 1 20121230 -9606 25911 DPCD RP11-529I10.4 - HGNC:24542|Ensembl:ENSG00000166171|HPRD:13247|Vega:OTTHUMG00000018934 10 10q24.32 deleted in primary ciliary dyskinesia homolog (mouse) protein-coding DPCD deleted in primary ciliary dyskinesia homolog (mouse) O deleted in a mouse model of primary ciliary dyskinesia|protein DPCD 20121230 -9606 25912 C1orf43 HSPC012 NICE-3|NS5ATP4|S863-3 HGNC:29876|Ensembl:ENSG00000143612|HPRD:16636|Vega:OTTHUMG00000035981 1 1q21.2 chromosome 1 open reading frame 43 protein-coding C1orf43 chromosome 1 open reading frame 43 O HCV NS5A-transactivated protein 4|hepatitis C virus NS5A-transactivated protein 4|protein NICE-3|uncharacterized protein C1orf43 20121230 -9606 25913 POT1 - HPOT1 HGNC:17284|MIM:606478|Ensembl:ENSG00000128513|HPRD:07572|Vega:OTTHUMG00000157194 7 7q31.33 protection of telomeres 1 homolog (S. pombe) protein-coding POT1 protection of telomeres 1 homolog (S. pombe) O POT1-like telomere end-binding protein|protection of telomeres protein 1 20121230 -9606 25914 RTTN - PMGYS HGNC:18654|MIM:610436|Ensembl:ENSG00000176225|HPRD:11525|Vega:OTTHUMG00000178694 18 18q22.2 rotatin protein-coding RTTN rotatin O - 20121230 -9606 25915 NDUFAF3 - 2P1|C3orf60|E3-3 HGNC:29918|MIM:612911|Ensembl:ENSG00000178057|HPRD:16809|Vega:OTTHUMG00000156773 3 3p21.31 NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 protein-coding NDUFAF3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 O NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3|nuclear protein E3-3 20121230 -9606 25917 THUMPD3 - - HGNC:24493|Ensembl:ENSG00000134077|HPRD:15507|Vega:OTTHUMG00000097031 3 3p25.3 THUMP domain containing 3 protein-coding THUMPD3 THUMP domain containing 3 O THUMP domain-containing protein 3 20121230 -9606 25920 COBRA1 RP13-122B23.3 NELF-B|NELFB HGNC:24324|MIM:611180|Ensembl:ENSG00000188986|HPRD:10845|Vega:OTTHUMG00000131778 9 9q34 cofactor of BRCA1 protein-coding COBRA1 cofactor of BRCA1 O negative elongation factor B|negative elongation factor protein B 20121230 -9606 25921 ZDHHC5 - DHHC5|ZNF375 HGNC:18472|MIM:614586|Ensembl:ENSG00000156599|HPRD:15720|Vega:OTTHUMG00000167198 11 11q12.1 zinc finger, DHHC-type containing 5 protein-coding ZDHHC5 zinc finger, DHHC-type containing 5 O DHHC-5|membrane-associated DHHC5 zinc finger protein|palmitoyltransferase ZDHHC5|probable palmitoyltransferase ZDHHC5|zinc finger DHHC domain-containing protein 5|zinc finger protein 375|zinc finger, DHHC domain containing 5 20121230 -9606 25923 ATL3 - - HGNC:24526|MIM:609369|Ensembl:ENSG00000184743|HPRD:13170|Vega:OTTHUMG00000167854 11 11q13.1 atlastin GTPase 3 protein-coding ATL3 atlastin GTPase 3 O atlastin 3|atlastin-3 20121230 -9606 25924 MYRIP - SLAC2-C|SLAC2C HGNC:19156|MIM:611790|Ensembl:ENSG00000170011|HPRD:14796|Vega:OTTHUMG00000131392 3 3p22.1 myosin VIIA and Rab interacting protein protein-coding MYRIP myosin VIIA and Rab interacting protein O Slp homologue lacking C2 domains|exophilin-8|myosin-VIIa- and Rab-interacting protein|rab effector MyRIP|slp homolog lacking C2 domains c|synaptotagmin-like protein homologue lacking C2 domains-c|synaptotagmin-like protein lacking C2 domains C 20121230 -9606 25925 ZNF521 - EHZF|Evi3 HGNC:24605|MIM:610974|Ensembl:ENSG00000198795|HPRD:18350|Vega:OTTHUMG00000179511 18 18q11.2 zinc finger protein 521 protein-coding ZNF521 zinc finger protein 521 O LYST-interacting protein 3|early hematopoietic zinc finger protein 20121230 -9606 25926 NOL11 L14 - HGNC:24557|Ensembl:ENSG00000130935|HPRD:10900|Vega:OTTHUMG00000179777 17 17q24.2 nucleolar protein 11 protein-coding NOL11 nucleolar protein 11 O - 20121230 -9606 25927 CNRIP1 - C2orf32|CRIP1 HGNC:24546|Ensembl:ENSG00000119865|HPRD:12813|Vega:OTTHUMG00000129565 2 2p14 cannabinoid receptor interacting protein 1 protein-coding CNRIP1 cannabinoid receptor interacting protein 1 O CB1 cannabinoid receptor-interacting protein 1|CRIP-1|cannabinoid receptor CB1-interacting protein 1 20121230 -9606 25928 SOSTDC1 CDA019 ECTODIN|USAG1 HGNC:21748|MIM:609675|Ensembl:ENSG00000171243|HPRD:15417|Vega:OTTHUMG00000090807 7 7p21.1 sclerostin domain containing 1 protein-coding SOSTDC1 sclerostin domain containing 1 O cystine-knot containing secreted protein|ectodermal BMP inhibitor|sclerostin domain-containing protein 1|uterine sensitization-associated protein-1 20121230 -9606 25929 GEMIN5 - GEMIN-5 HGNC:20043|MIM:607005|Ensembl:ENSG00000082516|HPRD:06109|Vega:OTTHUMG00000130189 5 5q33.2 gem (nuclear organelle) associated protein 5 protein-coding GEMIN5 gem (nuclear organelle) associated protein 5 O gem-associated protein 5 20121230 -9606 25930 PTPN23 - HD-PTP|HDPTP|PTP-TD14 HGNC:14406|MIM:606584|Ensembl:ENSG00000076201|HPRD:05959|Vega:OTTHUMG00000133520 3 3p21.3 protein tyrosine phosphatase, non-receptor type 23 protein-coding PTPN23 protein tyrosine phosphatase, non-receptor type 23 O His-domain protein tyrosine phosphatase|his domain-containing protein tyrosine phosphatase|protein tyrosine phosphatase TD14|tyrosine-protein phosphatase non-receptor type 23 20121230 -9606 25932 CLIC4 - CLIC4L|H1|MTCLIC|huH1|p64H1 HGNC:13518|MIM:606536|Ensembl:ENSG00000169504|HPRD:05943|Vega:OTTHUMG00000003327 1 1p36.11 chloride intracellular channel 4 protein-coding CLIC4 chloride intracellular channel 4 O chloride intracellular channel 4 like|chloride intracellular channel protein 4|intracellular chloride ion channel protein p64H1 20121230 -9606 25934 NIPSNAP3A HSPC299 NIPSNAP4|TASSC HGNC:23619|MIM:608871|Ensembl:ENSG00000136783|HPRD:16399|Vega:OTTHUMG00000020413 9 9q31.1 nipsnap homolog 3A (C. elegans) protein-coding NIPSNAP3A nipsnap homolog 3A (C. elegans) O protein NipSnap homolog 3A|protein NipSnap homolog 4|target for Salmonella secreted protein C 20121230 -9606 25936 NSL1 DC8 C1orf48|MIS14 HGNC:24548|MIM:609174|Ensembl:ENSG00000117697|HPRD:12378|Vega:OTTHUMG00000036806 1 1q41 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) protein-coding NSL1 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) O kinetochore-associated protein NSL1 homolog 20121230 -9606 25937 WWTR1 - TAZ HGNC:24042|MIM:607392|Ensembl:ENSG00000018408|HPRD:09580|Vega:OTTHUMG00000159614 3 3q23-q24 WW domain containing transcription regulator 1 protein-coding WWTR1 WW domain containing transcription regulator 1 O WW domain-containing transcription regulator protein 1|transcriptional co-activator with PDZ-binding motif|transcriptional coactivator with PDZ-binding motif 20121230 -9606 25938 HEATR5A hCG_41034 C14orf125 HGNC:20276|Ensembl:ENSG00000129493|Vega:OTTHUMG00000169043 14 14q12 HEAT repeat containing 5A protein-coding HEATR5A HEAT repeat containing 5A O HEAT repeat-containing protein 5A 20121230 -9606 25939 SAMHD1 RP1-132F21.1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88 HGNC:15925|MIM:606754|Ensembl:ENSG00000101347|HPRD:08418|Vega:OTTHUMG00000032402 20 20pter-q12 SAM domain and HD domain 1 protein-coding SAMHD1 SAM domain and HD domain 1 O SAM domain and HD domain-containing protein 1|dendritic cell-derived IFNG-induced protein|monocyte protein 5 20121230 -9606 25940 FAM98A - - HGNC:24520|Ensembl:ENSG00000119812|HPRD:16808|Vega:OTTHUMG00000152152 2 2p22.3 family with sequence similarity 98, member A protein-coding FAM98A family with sequence similarity 98, member A O protein FAM98A 20121230 -9606 25941 TPGS2 HMFN0601 C18orf10|L17|PGs2 HGNC:24561|Ensembl:ENSG00000134779|HPRD:12684|Vega:OTTHUMG00000178075 18 18q12.2 tubulin polyglutamylase complex subunit 2 protein-coding TPGS2 tubulin polyglutamylase complex subunit 2 O - 20121230 -9606 25942 SIN3A - - HGNC:19353|MIM:607776|Ensembl:ENSG00000169375|HPRD:09690|Vega:OTTHUMG00000142834 15 15q24.2 SIN3 transcription regulator homolog A (yeast) protein-coding SIN3A SIN3 transcription regulator homolog A (yeast) O SIN3 homolog A, transcription regulator|histone deacetylase complex subunit Sin3a|paired amphipathic helix protein Sin3a|transcriptional co-repressor Sin3A|transcriptional corepressor Sin3a|transcriptional regulator, SIN3A 20121230 -9606 25943 C20orf194 hCG_39261 - HGNC:17721|MIM:614146|Ensembl:ENSG00000088854|Vega:OTTHUMG00000031742 20 20p13 chromosome 20 open reading frame 194 protein-coding C20orf194 chromosome 20 open reading frame 194 O uncharacterized protein C20orf194 20121230 -9606 25945 PVRL3 - CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRR3 HGNC:17664|MIM:607147|Ensembl:ENSG00000177707|HPRD:08454|Vega:OTTHUMG00000159239 3 3q13 poliovirus receptor-related 3 protein-coding PVRL3 poliovirus receptor-related 3 O nectin 3|poliovirus receptor-related protein 3 20121230 -9606 25946 ZNF385A - HZF|RZF|ZFP385|ZNF385 HGNC:17521|MIM:609124|Ensembl:ENSG00000161642|HPRD:16448|Vega:OTTHUMG00000169840 12 12q13.13 zinc finger protein 385A protein-coding ZNF385A zinc finger protein 385A O hematopoietic zinc finger protein|retinal zinc finger protein|zinc finger protein 385 20121230 -9606 25948 KBTBD2 CGI-73 BKLHD1 HGNC:21751|Ensembl:ENSG00000170852|HPRD:13756|Vega:OTTHUMG00000152984 7 7p14.3 kelch repeat and BTB (POZ) domain containing 2 protein-coding KBTBD2 kelch repeat and BTB (POZ) domain containing 2 O BTB and kelch domain containing 1|BTB and kelch domain-containing protein 1|kelch repeat and BTB domain-containing protein 2 20121230 -9606 25949 SYF2 - CBPIN|NTC31|P29|fSAP29 HGNC:19824|MIM:607090|Ensembl:ENSG00000117614|HPRD:07386|Vega:OTTHUMG00000043610 1 1p36.11 SYF2 homolog, RNA splicing factor (S. cerevisiae) protein-coding SYF2 SYF2 homolog, RNA splicing factor (S. cerevisiae) O CCNDBP1 interactor|CCNDBP1-interactor|GCIP-interacting protein p29|functional spliceosome-associated protein 29|pre-mRNA-splicing factor SYF2 20121230 -9606 25950 RWDD3 - RSUME HGNC:21393|Ensembl:ENSG00000122481|HPRD:11527|Vega:OTTHUMG00000010910 1 1p21.3 RWD domain containing 3 protein-coding RWDD3 RWD domain containing 3 O RWD domain-containing protein 3|RWD-containing sumoylation enhancer 20121230 -9606 25953 PNKD FKSG19 BRP17|DYT8|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2 HGNC:9153|MIM:609023|Ensembl:ENSG00000127838|HPRD:11369|Vega:OTTHUMG00000133110 2 2q35 paroxysmal nonkinesigenic dyskinesia protein-coding PNKD paroxysmal nonkinesigenic dyskinesia O brain protein 17|myofibrillogenesis regulator 1|probable hydrolase PNKD|trans-activated by hepatitis C virus core protein 2 20121230 -9606 25956 SEC31B - SEC31B-1|SEC31L2 HGNC:23197|MIM:610258|Ensembl:ENSG00000075826|HPRD:15315|Vega:OTTHUMG00000019342 10 10q24.31 SEC31 homolog B (S. cerevisiae) protein-coding SEC31B SEC31 homolog B (S. cerevisiae) O SEC31-like 2|SEC31-like protein 2|SEC31-related protein B|protein transport protein Sec31B|secretory pathway component Sec31B-1 20121230 -9606 25957 PNISR HSPC261 C6orf111|HSPC306|RP11-98I9.2|SFRS18|SRrp130|bA98I9.2 HGNC:21222|Ensembl:ENSG00000132424|HPRD:10787|Vega:OTTHUMG00000015262 6 6q16.3 PNN-interacting serine/arginine-rich protein protein-coding PNISR PNN-interacting serine/arginine-rich protein O SR rich protein|SR-related protein|SR-rich protein|arginine/serine-rich protein PNISR|serine-arginine-rich-splicing regulatory protein 130|serine/arginine-rich-splicing regulatory protein 130|splicing factor, arginine/serine-rich 130|splicing factor, arginine/serine-rich 18 20121230 -9606 25959 KANK2 - ANKRD25|MXRA3|SIP HGNC:29300|MIM:614610|Ensembl:ENSG00000197256|HPRD:12463|Vega:OTTHUMG00000180799 19 19p13.2 KN motif and ankyrin repeat domains 2 protein-coding KANK2 KN motif and ankyrin repeat domains 2 O KN motif and ankyrin repeat domain-containing protein 2|SRC-1 interacting protein|SRC-1-interacting protein|SRC-interacting protein|SRC1-interacting protein|ankyrin repeat domain 25|ankyrin repeat domain-containing protein 25|kidney ankyrin repeat-containing protein 2|matrix-remodeling-associated protein 3|matrix-remodelling associated 3 20121230 -9606 25960 GPR124 - TEM5 HGNC:17849|MIM:606823|Ensembl:ENSG00000020181|HPRD:08437|Vega:OTTHUMG00000156182 8 8p11.23 G protein-coupled receptor 124 protein-coding GPR124 G protein-coupled receptor 124 O G-protein coupled receptor 124|tumor endothelial marker 5 20121230 -9606 25961 NUDT13 RP11-152N13.13-004 - HGNC:18827|MIM:609233|Ensembl:ENSG00000166321|HPRD:10124|Vega:OTTHUMG00000018453 10 10q22.1 nudix (nucleoside diphosphate linked moiety X)-type motif 13 protein-coding NUDT13 nudix (nucleoside diphosphate linked moiety X)-type motif 13 O nucleoside diphosphate-linked moiety X motif 13|nudix motif 13 20121230 -9606 25962 KIAA1429 MSTP054 fSAP121 HGNC:24500|Ensembl:ENSG00000164944|HPRD:10889|Vega:OTTHUMG00000164426 8 8q22.1 KIAA1429 protein-coding KIAA1429 KIAA1429 O functional spliceosome-associated protein 121|protein virilizer homolog 20121230 -9606 25963 TMEM87A PSEC0094 - HGNC:24522|Ensembl:ENSG00000103978|Vega:OTTHUMG00000172783 15 15q15.1 transmembrane protein 87A protein-coding TMEM87A transmembrane protein 87A O - 20121230 -9606 25966 C2CD2 - C21orf25|C21orf258|TMEM24L HGNC:1266|Ensembl:ENSG00000157617|HPRD:10745|Vega:OTTHUMG00000086779 21 21q22.3 C2 calcium-dependent domain containing 2 protein-coding C2CD2 C2 calcium-dependent domain containing 2 O C2 domain-containing protein 2|TMEM24 related geme 20121230 -9606 25970 SH2B1 - PSM|SH2B HGNC:30417|MIM:608937|Ensembl:ENSG00000178188|HPRD:12336|Vega:OTTHUMG00000176590 16 16p11.2 SH2B adaptor protein 1 protein-coding SH2B1 SH2B adaptor protein 1 O SH2 domain-containing protein 1B|SH2 domain-containing putative adapter SH2-B|SH2-B signaling protein|SH2B adapter protein 1|pro-rich, PH and SH2 domain-containing signaling mediator 20121230 -9606 25972 UNC50 HSD23 GMH1|UNCL|URP HGNC:16046|Ensembl:ENSG00000115446|HPRD:18259|Vega:OTTHUMG00000130562 2 2q11.2 unc-50 homolog (C. elegans) protein-coding UNC50 unc-50 homolog (C. elegans) O PDLs22|geal-6 membrane-associated high-copy suppressor 1|hGMH1|periodontal ligament-specific protein 22|protein GMH1 homolog|protein unc-50 homolog|unc-50 related|uncoordinated-like protein 20121230 -9606 25973 PARS2 - MT-PRORS HGNC:30563|MIM:612036|Ensembl:ENSG00000162396|HPRD:13220|Vega:OTTHUMG00000009915 1 1p32.2 prolyl-tRNA synthetase 2, mitochondrial (putative) protein-coding PARS2 prolyl-tRNA synthetase 2, mitochondrial (putative) O proRS|probable proline--tRNA ligase, mitochondrial|proline tRNA ligase 2, mitochondrial (putative)|proline--tRNA ligase 20121230 -9606 25974 MMACHC - RP11-291L19.3|cblC HGNC:24525|MIM:609831|Ensembl:ENSG00000132763|HPRD:18585|Vega:OTTHUMG00000007742 1 1p34.1 methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria protein-coding MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria O methylmalonic aciduria and homocystinuria type C protein 20121230 -9606 25975 EGFL6 PP648 MAEG|W80 HGNC:3235|MIM:300239|Ensembl:ENSG00000198759|HPRD:02212|Vega:OTTHUMG00000021155 X Xp22 EGF-like-domain, multiple 6 protein-coding EGFL6 EGF-like-domain, multiple 6 O EGF repeat-containing protein 6|EGF-like protein 6|MAM and EGF domain containing|MAM and EGF domains-containing gene protein|epidermal growth factor-like protein 6 20121230 -9606 25976 TIPARP - ARTD14|PARP7|pART14 HGNC:23696|MIM:612480|Ensembl:ENSG00000163659|HPRD:18192|Vega:OTTHUMG00000158646 3 3q25.31 TCDD-inducible poly(ADP-ribose) polymerase protein-coding TIPARP TCDD-inducible poly(ADP-ribose) polymerase O ADP-ribosyltransferase diphtheria toxin-like 14|TCDD-inducible poly [ADP-ribose] polymerase|poly [ADP-ribose] polymerase 7 20121230 -9606 25977 NECAP1 - - HGNC:24539|MIM:611623|Ensembl:ENSG00000089818|HPRD:14819|Vega:OTTHUMG00000168568 12 12p13.31 NECAP endocytosis associated 1 protein-coding NECAP1 NECAP endocytosis associated 1 O NECAP endocytosis-associated protein 1|NECAP-1|adaptin ear-binding coat-associated protein 1|adaptin-ear-binding coat-associated protein 1 20121230 -9606 25978 CHMP2B CGI-84 ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B HGNC:24537|MIM:609512|Ensembl:ENSG00000083937|HPRD:13174|Vega:OTTHUMG00000158982 3 3p11.2 charged multivesicular body protein 2B protein-coding CHMP2B charged multivesicular body protein 2B O VPS2 homolog B|charged multivesicular body protein 2b|chromatin modifying protein 2B|vacuolar protein-sorting-associated protein 2-2 20121230 -9606 25979 DHRS7B CGI-93 SDR32C1 HGNC:24547|Ensembl:ENSG00000109016|HPRD:13215|Vega:OTTHUMG00000178944 17 17p12 dehydrogenase/reductase (SDR family) member 7B protein-coding DHRS7B dehydrogenase/reductase (SDR family) member 7B O dehydrogenase/reductase SDR family member 7B|short chain dehydrogenase/reductase family 32C, member 1 20121230 -9606 25980 AAR2 CGI-23 C20orf4 HGNC:15886|Ensembl:ENSG00000131043|HPRD:12767|Vega:OTTHUMG00000032380 20 20pter-q12 AAR2 splicing factor homolog (S. cerevisiae) protein-coding AAR2 AAR2 splicing factor homolog (S. cerevisiae) O protein AAR2 homolog 20121230 -9606 25981 DNAH1 - DNAHC1|HDHC7|HL-11|HL11|XLHSRF-1 HGNC:2940|MIM:603332|Ensembl:ENSG00000114841|HPRD:11790|Vega:OTTHUMG00000158378 3 3p21.1 dynein, axonemal, heavy chain 1 protein-coding DNAH1 dynein, axonemal, heavy chain 1 O DNAH1 variant protein|HSRF-1|axonemal beta dynein heavy chain 1|ciliary dynein heavy chain 1|dynein heavy chain 1, axonemal|dynein, axonemal, heavy polypeptide 1|heat shock regulated 1|heat shock regulated protein 1 20121230 -9606 25983 NGDN - C14orf120|LCP5|NGD|lpd-2 HGNC:20271|MIM:610777|Ensembl:ENSG00000129460|Vega:OTTHUMG00000171501 14 14q11.2 neuroguidin, EIF4E binding protein protein-coding NGDN neuroguidin, EIF4E binding protein O EIF4E-binding protein|eukaryotic initiation factor 4E and CPEB binding protein|neuroguidin 20121230 -9606 25984 KRT23 - CK23|HAIK1|K23 HGNC:6438|MIM:606194|Ensembl:ENSG00000108244|HPRD:05863|Vega:OTTHUMG00000133376 17 17q21.2 keratin 23 (histone deacetylase inducible) protein-coding KRT23 keratin 23 (histone deacetylase inducible) O CK-23|cytokeratin 23|cytokeratin-23|histone deacetylase inducible keratin 23|hyperacetylation-inducible type I keratin|keratin, type I cytoskeletal 23|keratin-23|type I intermediate filament cytokeratin 20121230 -9606 25987 TSKU UNQ850/PRO1788 E2IG4|LRRC54|TSK HGNC:28850|MIM:608015|Ensembl:ENSG00000182704|HPRD:12152|Vega:OTTHUMG00000165238 11 11q13.5 tsukushi, small leucine rich proteoglycan protein-coding TSKU tsukushi, small leucine rich proteoglycan O E2-induced gene 4 protein|leucine rich repeat containing 54|leucine-rich repeat-containing protein 54|tsukushi homolog|tsukushi small leucine rich proteoglycan homolog|tsukushin 20121230 -9606 25988 HINFP - HiNF-P|MIZF|ZNF743 HGNC:17850|MIM:607099|Ensembl:ENSG00000172273|HPRD:07387|Vega:OTTHUMG00000166168 11 11q23.3 histone H4 transcription factor protein-coding HINFP histone H4 transcription factor O MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein|MBD2-interacting zinc finger 1|MBD2-interacting zinc finger protein|histone H4 gene-specific protein HiNF-P|histone nuclear factor P|methyl-CpG-binding protein 2-interacting zinc finger protein 20121230 -9606 25989 ULK3 - - HGNC:19703|MIM:613472|Ensembl:ENSG00000140474|HPRD:15609|Vega:OTTHUMG00000173020 15 15q24.1 unc-51-like kinase 3 (C. elegans) protein-coding ULK3 unc-51-like kinase 3 (C. elegans) O serine/threonine-protein kinase ULK3 20121230 -9606 25992 SNED1 - SST3|Snep HGNC:24696|Ensembl:ENSG00000162804|Vega:OTTHUMG00000151803 2 2q37.3 sushi, nidogen and EGF-like domains 1 protein-coding SNED1 sushi, nidogen and EGF-like domains 1 O 6720455I24Rik homolog|IRE-BP1|insulin responsive sequence DNA binding protein-1|insulin-responsive sequence DNA-binding protein 1|sushi, nidogen and EGF-like domain-containing protein 1 20121230 -9606 25994 HIGD1A HSPC010 HIG1 HGNC:29527|Ensembl:ENSG00000181061|HPRD:13651|Vega:OTTHUMG00000156277 3 3p22.1 HIG1 hypoxia inducible domain family, member 1A protein-coding HIGD1A HIG1 hypoxia inducible domain family, member 1A O HIG1 domain family member 1A|HIG1 domain family, member 1A|hypoxia inducible gene 1|hypoxia-inducible gene 1 protein 20121230 -9606 25996 REXO2 CGI-114 REX2|RFN|SFN HGNC:17851|MIM:607149|Ensembl:ENSG00000076043|HPRD:06192|Vega:OTTHUMG00000168271 11 11q23.2 REX2, RNA exonuclease 2 homolog (S. cerevisiae) protein-coding REXO2 REX2, RNA exonuclease 2 homolog (S. cerevisiae) O RNA exonuclease 2 homolog|oligoribonuclease, mitochondrial|small fragment nuclease 20121230 -9606 25998 IBTK - BTKI|RP1-93K22.1 HGNC:17853|MIM:606457|Ensembl:ENSG00000005700|HPRD:12105|Vega:OTTHUMG00000015102 6 6q14.1 inhibitor of Bruton agammaglobulinemia tyrosine kinase protein-coding IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase O BTK-binding protein|Bruton agammaglobulinemia tyrosine kinase inhibitor|inhibitor of Bruton tyrosine kinase|inhibitor of Bruton's tyrosine kinase|inhibitor of Bruton's tyrosine kinase-alpha|inhibitor of Bruton's tyrosine kinase-beta|inhibitor of Bruton's tyrosine kinase-gamma 20121230 -9606 25999 CLIP3 - CLIPR-59|CLIPR59|RSNL1 HGNC:24314|MIM:607382|Ensembl:ENSG00000105270|HPRD:09572|Vega:OTTHUMG00000181747 19 19q13.12 CAP-GLY domain containing linker protein 3 protein-coding CLIP3 CAP-GLY domain containing linker protein 3 O CAP-Gly domain-containing linker protein 3|CLIP-170-related 59 kDa protein|cytoplasmic linker protein 170-related 59 kDa protein|restin-like 1 20121230 -9606 26000 TBC1D10B FP2461 EPI64B HGNC:24510|MIM:613620|Ensembl:ENSG00000169221|HPRD:10892|Vega:OTTHUMG00000132396 16 16p11.2 TBC1 domain family, member 10B protein-coding TBC1D10B TBC1 domain family, member 10B O Rab27A-GAPbeta|TBC1 domain family member 10B|rab27A-GAP-beta 20121230 -9606 26001 RNF167 LP2254 5730408C10Rik|RING105 HGNC:24544|MIM:610431|Ensembl:ENSG00000108523|HPRD:15261|Vega:OTTHUMG00000099397 17 17p13.2 ring finger protein 167 protein-coding RNF167 ring finger protein 167 O E3 ubiquitin-protein ligase RNF167 20121230 -9606 26002 MOXD1 UNQ2493/PRO5780 MOX|PRO5780|dJ248E1.1 HGNC:21063|MIM:609000|Ensembl:ENSG00000079931|HPRD:10093|Vega:OTTHUMG00000055853 6 6q23.2 monooxygenase, DBH-like 1 protein-coding MOXD1 monooxygenase, DBH-like 1 O DBH-like monooxygenase protein 1|dopamine-oxygenase|monooxygenase X 20121230 -9606 26003 GORASP2 - GOLPH6|GRASP55|GRS2|p59 HGNC:17500|MIM:608693|Ensembl:ENSG00000115806|HPRD:08303|Vega:OTTHUMG00000154072 2 2q31.1 golgi reassembly stacking protein 2, 55kDa protein-coding GORASP2 golgi reassembly stacking protein 2, 55kDa O Golgi reassembly-stacking protein 2|golgi phosphoprotein 6 20121230 -9606 26005 C2CD3 - - HGNC:24564|Ensembl:ENSG00000168014|HPRD:16811|Vega:OTTHUMG00000168110 11 11q13.4 C2 calcium-dependent domain containing 3 protein-coding C2CD3 C2 calcium-dependent domain containing 3 O C2 domain-containing protein 3 20121230 -9606 26007 DAK - NET45 HGNC:24552|Ensembl:ENSG00000149476|HPRD:13180|Vega:OTTHUMG00000168076 11 11q12.2 dihydroxyacetone kinase 2 homolog (S. cerevisiae) protein-coding DAK dihydroxyacetone kinase 2 homolog (S. cerevisiae) O ATP-dependent dihydroxyacetone kinase|DHA kinase|Dha kinase/FMN cyclase|FAD-AMP lyase cyclic FMN forming|FAD-AMP lyase cyclizing|bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing)|glycerone kinase 20121230 -9606 26009 ZZZ3 - ATAC1 HGNC:24523|Ensembl:ENSG00000036549|HPRD:15907|Vega:OTTHUMG00000009652 1 1p31.1 zinc finger, ZZ-type containing 3 protein-coding ZZZ3 zinc finger, ZZ-type containing 3 O ATAC component 1 homolog|ZZ-type zinc finger-containing protein 3|zinc finger, ZZ domain containing 3 20121230 -9606 26010 SPATS2L SP1224 DNAPTP6|SGNP HGNC:24574|MIM:613817|Ensembl:ENSG00000196141|HPRD:10916|Vega:OTTHUMG00000154589 2 2q33.1 spermatogenesis associated, serine-rich 2-like protein-coding SPATS2L spermatogenesis associated, serine-rich 2-like O DNA polymerase transactivated protein 6|DNA polymerase-transactivated protein 6|SPATS2-like protein|stress granule and nucleolar protein 20121230 -9606 26011 TENM4 - Doc4|ODZ4|TNM4|Ten-M4 HGNC:29945|MIM:610084|Ensembl:ENSG00000149256|Vega:OTTHUMG00000166770 11 11q14.1 teneurin transmembrane protein 4 protein-coding TENM4 teneurin transmembrane protein 4 O odd Oz/ten-m homolog 4|odz, odd Oz/ten-m homolog 4|protein Odd Oz/ten-m homolog 4|ten-4|tenascin-M4|teneurin-4 20121230 -9606 26012 NELF RP11-48C7.1 HH9 HGNC:29843|MIM:608137|Ensembl:ENSG00000165802|HPRD:10485|Vega:OTTHUMG00000020989 9 9q34.3 nasal embryonic LHRH factor protein-coding NELF nasal embryonic LHRH factor O nasal embryonic luteinizing hormone-releasing hormone factor 20121230 -9606 26013 L3MBTL1 RP1-138B7.1 H-L(3)MBT|L3MBTL|dJ138B7.3 HGNC:15905|MIM:608802|Ensembl:ENSG00000185513|HPRD:16387|Vega:OTTHUMG00000032503 20 20q13.12 l(3)mbt-like 1 (Drosophila) protein-coding L3MBTL1 l(3)mbt-like 1 (Drosophila) O l(3)mbt protein homolog|lethal (3) malignant brain tumor l(3)|lethal(3)malignant brain tumor-like protein 1 20121230 -9606 26015 RPAP1 - - HGNC:24567|MIM:611475|Ensembl:ENSG00000103932|HPRD:11522|Vega:OTTHUMG00000130342 15 15q15.1 RNA polymerase II associated protein 1 protein-coding RPAP1 RNA polymerase II associated protein 1 O RNA polymerase II-associated protein 1 20121230 -9606 26017 FAM32A CGI-144 OTAG-12|OTAG12 HGNC:24563|MIM:614554|Ensembl:ENSG00000105058|HPRD:13305|Vega:OTTHUMG00000182279 19 19pter-p13.3 family with sequence similarity 32, member A protein-coding FAM32A family with sequence similarity 32, member A O ovarian tumor associated gene-12|ovarian tumor-associated gene 12|protein FAM32A 20121230 -9606 26018 LRIG1 - LIG-1|LIG1 HGNC:17360|MIM:608868|Ensembl:ENSG00000144749|HPRD:10057|Vega:OTTHUMG00000158727 3 3p14 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding LRIG1 leucine-rich repeats and immunoglobulin-like domains 1 O leucine-rich repeat protein LRIG1|leucine-rich repeats and immunoglobulin-like domains protein 1|ortholog of mouse integral membrane glycoprotein LIG-1 20121230 -9606 26019 UPF2 - HUPF2|RENT2|smg-3 HGNC:17854|MIM:605529|Ensembl:ENSG00000151461|HPRD:10405|Vega:OTTHUMG00000017678 10 10p14-p13 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding UPF2 UPF2 regulator of nonsense transcripts homolog (yeast) O nonsense mRNA reducing factor 2|regulator of nonsense transcripts 2|smg-3 homolog, nonsense mediated mRNA decay factor|up-frameshift suppressor 2 homolog|yeast Upf2p homolog 20121230 -9606 26020 LRP10 MSTP087 LRP9|MST087 HGNC:14553|MIM:609921|Ensembl:ENSG00000197324|HPRD:14311|Vega:OTTHUMG00000028705 14 14q11.2 low density lipoprotein receptor-related protein 10 protein-coding LRP10 low density lipoprotein receptor-related protein 10 O LRP-10|low-density lipoprotein receptor-related protein 10 20121230 -9606 26022 TMEM98 UNQ536/PRO1079 - HGNC:24529|Ensembl:ENSG00000006042|HPRD:13171|Vega:OTTHUMG00000132882 17 17q11.2 transmembrane protein 98 protein-coding TMEM98 transmembrane protein 98 O - 20121230 -9606 26024 PTCD1 - - HGNC:22198|MIM:614774|Ensembl:ENSG00000106246|HPRD:11463|Vega:OTTHUMG00000154600 7 7q22.1 pentatricopeptide repeat domain 1 protein-coding PTCD1 pentatricopeptide repeat domain 1 O pentatricopeptide repeat-containing protein 1, mitochondrial 20121230 -9606 26025 PCDHGA12 UNQ371/PRO707 CDH21|FIB3|PCDH-GAMMA-A12 HGNC:8699|MIM:603059|Ensembl:ENSG00000253159|HPRD:07538|Vega:OTTHUMG00000129611 5 5q31 protocadherin gamma subfamily A, 12 protein-coding PCDHGA12 protocadherin gamma subfamily A, 12 O cadherin 21|cadherin-21|fibroblast cadherin FIB3|fibroblast cadherin-3|protocadherin gamma-A12 20121230 -9606 26027 ACOT11 - BFIT|STARD14|THEA|THEM1 HGNC:18156|MIM:606803|Ensembl:ENSG00000162390|HPRD:07075|Vega:OTTHUMG00000009891 1 1p32.3 acyl-CoA thioesterase 11 protein-coding ACOT11 acyl-CoA thioesterase 11 O START domain containing 14|StAR-related lipid transfer (START) domain containing 14|acyl-CoA thioester hydrolase 11|acyl-coenzyme A thioesterase 11|adipose-associated thioesterase|brown fat-inducible thioesterase|thioesterase superfamily member 1|thioesterase, adipose associated 20121230 -9606 26030 PLEKHG3 - ARHGEF43|KIAA0599 HGNC:20364|Ensembl:ENSG00000126822|HPRD:17861|Vega:OTTHUMG00000029671 14 14q23.3 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding PLEKHG3 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 O PH domain-containing family G member 3|pleckstrin homology domain containing, family G, member 3|pleckstrin homology domain-containing family G member 3 20121230 -9606 26031 OSBPL3 - ORP-3|ORP3|OSBP3 HGNC:16370|MIM:606732|Ensembl:ENSG00000070882|HPRD:09474|Vega:OTTHUMG00000023277 7 7p15 oxysterol binding protein-like 3 protein-coding OSBPL3 oxysterol binding protein-like 3 O OSBP-related protein 3|oxysterol-binding protein 3|oxysterol-binding protein-related protein 3 20121230 -9606 26032 SUSD5 - - HGNC:29061|Ensembl:ENSG00000173705|Vega:OTTHUMG00000155829 3 3p22.3 sushi domain containing 5 protein-coding SUSD5 sushi domain containing 5 O sushi domain-containing protein 5 20121230 -9606 26033 ATRNL1 - ALP|bA338L11.1|bA454H24.1 HGNC:29063|MIM:612869|Ensembl:ENSG00000107518|HPRD:12504|Vega:OTTHUMG00000019096 10 10q26 attractin-like 1 protein-coding ATRNL1 attractin-like 1 O attractin-like protein 1 20121230 -9606 26034 IPCEF1 - PIP3-E|RP3-402L9.2 HGNC:21204|Ensembl:ENSG00000074706|HPRD:17851|Vega:OTTHUMG00000015872 6 6q25.2 interaction protein for cytohesin exchange factors 1 protein-coding IPCEF1 interaction protein for cytohesin exchange factors 1 O interaction protein for cytohesin exchange factors 1 Interaction protein for cytohesin exchange factors 1|interactor protein for cytohesin exchange factors 1|phosphoinositide binding protein PIP3-E|phosphoinositide-binding protein PIP3-E 20121230 -9606 26035 GLCE - HSEPI HGNC:17855|MIM:612134|Ensembl:ENSG00000138604|HPRD:07020|Vega:OTTHUMG00000172084 15 15q23 glucuronic acid epimerase protein-coding GLCE glucuronic acid epimerase O D-glucuronyl C5-epimerase|UDP-glucuronic acid epimerase|glucuronyl C5-epimerase|heparan sulfate C5-epimerase|heparan sulfate epimerase|heparin/heparan sulfate-glucuronic acid C5-epimerase|heparin/heparan sulfate:glucuronic acid C5-epimerase|heparosan-N-sulfate-glucuronate 5-epimerase 20121230 -9606 26036 ZNF451 RP3-417I1.1 COASTER|dJ417I1.1 HGNC:21091|Ensembl:ENSG00000112200|HPRD:10332|Vega:OTTHUMG00000014916 6 6p12.1 zinc finger protein 451 protein-coding ZNF451 zinc finger protein 451 O coactivator for steroid receptors 20121230 -9606 26037 SIPA1L1 - E6TP1 HGNC:20284|Ensembl:ENSG00000197555|HPRD:11559|Vega:OTTHUMG00000171282 14 14q24.2 signal-induced proliferation-associated 1 like 1 protein-coding SIPA1L1 signal-induced proliferation-associated 1 like 1 O E6-targeted protein 1|H_DJ1140G11.1|SIPA1-like protein 1|WUGSC:H_DJ1140G11.1|high-risk human papilloma viruses E6 oncoproteins targeted protein 1|signal-induced proliferation-associated 1-like 1|signal-induced proliferation-associated 1-like protein 1 20121230 -9606 26038 CHD5 RP1-233K16.2 CHD-5 HGNC:16816|MIM:610771|Ensembl:ENSG00000116254|HPRD:10828|Vega:OTTHUMG00000000952 1 1p36.31 chromodomain helicase DNA binding protein 5 protein-coding CHD5 chromodomain helicase DNA binding protein 5 O ATP-dependent helicase CHD5|chromodomain-helicase-DNA-binding protein 5 20121230 -9606 26039 SS18L1 RP5-1005F21.1 CREST|LP2261 HGNC:15592|MIM:606472|Ensembl:ENSG00000184402|HPRD:09398|Vega:OTTHUMG00000032902 20 20q13.3 synovial sarcoma translocation gene on chromosome 18-like 1 protein-coding SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 O SS18-like protein 1|SYT homolog 1|calcium-responsive transactivator 20121230 -9606 26040 SETBP1 - SEB HGNC:15573|MIM:611060|Ensembl:ENSG00000152217|HPRD:10224|Vega:OTTHUMG00000132613 18 18q21.1 SET binding protein 1 protein-coding SETBP1 SET binding protein 1 O SET-binding protein 20121230 -9606 26043 UBXN7 - UBXD7 HGNC:29119|Ensembl:ENSG00000163960|Vega:OTTHUMG00000155639 3 3q29 UBX domain protein 7 protein-coding UBXN7 UBX domain protein 7 O UBX domain containing 7|UBX domain-containing protein 7 20121230 -9606 26045 LRRTM2 - - HGNC:19409|MIM:610868|Ensembl:ENSG00000146006|HPRD:17454|Vega:OTTHUMG00000163535 5 5q31.2 leucine rich repeat transmembrane neuronal 2 protein-coding LRRTM2 leucine rich repeat transmembrane neuronal 2 O leucine-rich repeat neuronal 2 protein|leucine-rich repeat transmembrane neuronal 2 protein|leucine-rich repeat transmembrane neuronal protein 2 20121230 -9606 26046 LTN1 HSPC087 C21orf10|C21orf98|RNF160|ZNF294 HGNC:13082|MIM:613083|Ensembl:ENSG00000198862|HPRD:10327|Vega:OTTHUMG00000078803 21 21q22.11 listerin E3 ubiquitin protein ligase 1 protein-coding LTN1 listerin E3 ubiquitin protein ligase 1 O E3 ubiquitin-protein ligase listerin|ring finger protein 160|zinc finger protein 294 20121230 -9606 26047 CNTNAP2 - AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 HGNC:13830|MIM:604569|Ensembl:ENSG00000174469|HPRD:05197|Vega:OTTHUMG00000152743 7 7q35 contactin associated protein-like 2 protein-coding CNTNAP2 contactin associated protein-like 2 O cell recognition molecule Caspr2|contactin-associated protein-like 2|homolog of Drosophila neurexin IV 20121230 -9606 26048 ZNF500 - ZKSCAN18 HGNC:23716|Ensembl:ENSG00000103199|HPRD:18347|Vega:OTTHUMG00000176543 16 16p13.3 zinc finger protein 500 protein-coding ZNF500 zinc finger protein 500 O zinc finger protein with KRAB and SCAN domains 18 20121230 -9606 26049 FAM169A - SLAP75 HGNC:29138|Ensembl:ENSG00000198780|Vega:OTTHUMG00000162930 5 5q13.3 family with sequence similarity 169, member A protein-coding FAM169A family with sequence similarity 169, member A O protein FAM169A|soluble lamina-associated protein of 75 kD 20121230 -9606 26050 SLITRK5 - LRRC11|bA364G4.2 HGNC:20295|MIM:609680|Ensembl:ENSG00000165300|HPRD:18065|Vega:OTTHUMG00000017167 13 13q31.2 SLIT and NTRK-like family, member 5 protein-coding SLITRK5 SLIT and NTRK-like family, member 5 O SLIT and NTRK-like protein 5|leucine rich repeat containing 11|leucine-rich repeat-containing protein 11|slit and trk like gene 5 20121230 -9606 26051 PPP1R16B RP5-1076E17.1 ANKRD4|TIMAP HGNC:15850|MIM:613275|Ensembl:ENSG00000101445|HPRD:15168|Vega:OTTHUMG00000032465 20 20q11.23 protein phosphatase 1, regulatory subunit 16B protein-coding PPP1R16B protein phosphatase 1, regulatory subunit 16B O CAAX box protein TIMAP|TGF-beta-inhibited membrane-associated protein|ankyrin repeat domain protein 4|ankyrin repeat domain-containing protein 4|hTIMAP|protein phosphatase 1 regulatory inhibitor subunit 16B|protein phosphatase 1, regulatory (inhibitor) subunit 16B 20121230 -9606 26052 DNM3 RP1-106H8.3 - HGNC:29125|MIM:611445|Ensembl:ENSG00000197959|HPRD:13241|Vega:OTTHUMG00000034913 1 1q24.3 dynamin 3 protein-coding DNM3 dynamin 3 O Dyna III|T-dynamin|dynamin family member|dynamin, testicular|dynamin-3 20121230 -9606 26053 AUTS2 - FBRSL2 HGNC:14262|MIM:607270|Ensembl:ENSG00000158321|HPRD:06276|Vega:OTTHUMG00000023865 7 7q11.22 autism susceptibility candidate 2 protein-coding AUTS2 autism susceptibility candidate 2 O autism susceptibility gene 2 protein|autism-related protein 1 20121230 -9606 26054 SENP6 RP1-134M13.1 SSP1|SUSP1 HGNC:20944|MIM:605003|Ensembl:ENSG00000112701|HPRD:05417|Vega:OTTHUMG00000015060 6 6q13-q14.3 SUMO1/sentrin specific peptidase 6 protein-coding SENP6 SUMO1/sentrin specific peptidase 6 O 2810017C20Rik|SUMO-1-specific protease 1|SUMO1/sentrin specific protease 6|sentrin-specific protease 6|sentrin/SUMO-specific protease SENP6 20121230 -9606 26056 RAB11FIP5 - GAF1|RIP11|pp75 HGNC:24845|MIM:605536|Ensembl:ENSG00000135631|HPRD:16117|Vega:OTTHUMG00000129779 2 2p13 RAB11 family interacting protein 5 (class I) protein-coding RAB11FIP5 RAB11 family interacting protein 5 (class I) O gaf-1|gamma-SNAP-associated factor 1|phosphoprotein pp75|rab11 family-interacting protein 5|rab11-FIP5|rab11-interacting protein Rip11 20121230 -9606 26057 ANKRD17 - GTAR|NY-BR-16 HGNC:23575|Ensembl:ENSG00000132466|HPRD:10648|Vega:OTTHUMG00000160826 4 4q13.3 ankyrin repeat domain 17 protein-coding ANKRD17 ankyrin repeat domain 17 O ankyrin repeat domain-containing protein 17|gene trap ankyrin repeat protein|serologically defined breast cancer antigen NY-BR-16 20121230 -9606 26058 GIGYF2 - GYF2|PARK11|PERQ2|PERQ3|TNRC15 HGNC:11960|MIM:612003|Ensembl:ENSG00000204120|HPRD:11639|Vega:OTTHUMG00000153237 2 2q37.1 GRB10 interacting GYF protein 2 protein-coding GIGYF2 GRB10 interacting GYF protein 2 O GRB10-interacting GYF protein 2|GYF domain containing 2|PERQ amino acid rich, with GYF domain 2|PERQ amino acid rich, with GYF domain 3|PERQ amino acid-rich with GYF domain-containing protein 2|trinucleotide repeat containing 15|trinucleotide repeat-containing gene 15 protein 20121230 -9606 26059 ERC2 - CAST|CAST1|ELKSL|SPBC110|Spc110 HGNC:31922|Ensembl:ENSG00000187672|HPRD:10810|Vega:OTTHUMG00000158390 3 3p14.3 ELKS/RAB6-interacting/CAST family member 2 protein-coding ERC2 ELKS/RAB6-interacting/CAST family member 2 O CAZ-associated structural protein|ERC protein 2|cytomatrix protein p110 20121230 -9606 26060 APPL1 - APPL|DIP13alpha HGNC:24035|MIM:604299|Ensembl:ENSG00000157500|HPRD:05053|Vega:OTTHUMG00000133756 3 3p21.1-p14.3 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 protein-coding APPL1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 O AKT2 interactor|DCC-interacting protein 13-alpha|adapter protein containing PH domain, PTB domain and leucine zipper motif 1|adaptor protein containing pH domain, PTB domain and leucine zipper motif 1|dip13-alpha|signaling adaptor protein DIP13alpha 20121230 -9606 26061 HACL1 HSPC279 2-HPCL|HPCL|HPCL2|PHYH2 HGNC:17856|MIM:604300|Ensembl:ENSG00000131373|HPRD:09183|Vega:OTTHUMG00000129862 3 3p25.1 2-hydroxyacyl-CoA lyase 1 protein-coding HACL1 2-hydroxyacyl-CoA lyase 1 O 1600020H07Rik|2-hydroxyphytanol-CoA lyase|2-hydroxyphytanoyl-CoA lyase|phytanoyl-CoA 2-hydroxylase 2|phytanoyl-CoA hydroxylase 2 20121230 -9606 26062 HYALP1 tcag7.1303 HYAL6 HGNC:5324 7 7q31.3 hyaluronoglucosaminidase pseudogene 1 pseudo HYALP1 hyaluronoglucosaminidase pseudogene 1 O - 20121230 -9606 26063 DECR2 AL023881.1 PDCR|SDR17C1 HGNC:2754|Ensembl:ENSG00000242612|HPRD:16789|Vega:OTTHUMG00000047846 16 16p13.3 2,4-dienoyl CoA reductase 2, peroxisomal protein-coding DECR2 2,4-dienoyl CoA reductase 2, peroxisomal O 2,4-dienoyl-CoA reductase 2|peroxisomal 2,4-dienoyl-CoA reductase|short chain dehydrogenase/reductase family 17C, member 1 20121230 -9606 26064 RAI14 - NORPEG|RAI13 HGNC:14873|MIM:606586|Ensembl:ENSG00000039560|HPRD:09416|Vega:OTTHUMG00000162019 5 5p13.3-p13.2 retinoic acid induced 14 protein-coding RAI14 retinoic acid induced 14 O ankycorbin|ankyrin repeat and coiled-coil structure-containing protein|novel retinal pigment epithelial cell protein|retinoic acid-induced protein 14 20121230 -9606 26065 LSM14A - C19orf13|FAM61A|RAP55|RAP55A HGNC:24489|MIM:610677|Ensembl:ENSG00000257103|HPRD:12697|Vega:OTTHUMG00000180491 19 19q13.11 LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) O LSM14 homolog A|RNA-associated protein 55|RNA-associated protein 55A|alphaSNBP|family with sequence similarity 61, member A|hRAP55|hRAP55A|protein LSM14 homolog A|protein SCD6 homolog|putative alpha-synuclein-binding protein 20121230 -9606 26069 DKFZP586B0319 - - - 3 3q29 DKFZP586B0319 protein protein-coding - - - uncharacterized protein LOC26069 20111026 -9606 26070 DKFZP434K028 - - - 11 11q12.2 uncharacterized LOC26070 miscRNA - - - - 20121230 -9606 26071 FAM127B - CXX1b|MAR8A HGNC:24514|Ensembl:ENSG00000203950|HPRD:06485|Vega:OTTHUMG00000022466 X Xq26.3 family with sequence similarity 127, member B protein-coding FAM127B family with sequence similarity 127, member B O mammalian retrotransposon derived protein 8A|protein FAM127B 20121230 -9606 26073 POLDIP2 HSPC017 PDIP38|POLD4 HGNC:23781|MIM:611519|HPRD:17874 17 17q11.2 polymerase (DNA-directed), delta interacting protein 2 protein-coding POLDIP2 polymerase (DNA-directed), delta interacting protein 2 O 38 kDa DNA polymerase delta interaction protein|p38|polymerase delta interacting protein 38|polymerase delta-interacting protein 2 20121230 -9606 26074 C20orf26 RP11-470C13.3 dJ1002M8.3|dJ1178H5.4 HGNC:15872|Ensembl:ENSG00000089101|HPRD:16647|Vega:OTTHUMG00000032006 20 20p11.23 chromosome 20 open reading frame 26 protein-coding C20orf26 chromosome 20 open reading frame 26 O uncharacterized protein C20orf26 20121230 -9606 26077 DKFZP434H168 - - - 16 16q12.2 uncharacterized LOC26077 miscRNA - - - - 20121230 -9606 26080 LINC00281 - NCRNA00281 HGNC:24482 13 - long intergenic non-protein coding RNA 281 miscRNA LINC00281 long intergenic non-protein coding RNA 281 O - 20121230 -9606 26082 DKFZP434L187 - - - 15 15q13.2 uncharacterized LOC26082 miscRNA - - - - 20121209 -9606 26083 TBC1D29 - - HGNC:24509|Ensembl:ENSG00000266733|HPRD:13162|Vega:OTTHUMG00000178857 17 17q11.2 TBC1 domain family, member 29 protein-coding TBC1D29 TBC1 domain family, member 29 O putative TBC1 domain family member 29 20121230 -9606 26084 ARHGEF26 - CSGEF|HMFN1864|SGEF HGNC:24490|Ensembl:ENSG00000114790|HPRD:11554|Vega:OTTHUMG00000159098 3 3q25.2 Rho guanine nucleotide exchange factor (GEF) 26 protein-coding ARHGEF26 Rho guanine nucleotide exchange factor (GEF) 26 O SH3 domain-containing guanine exchange factor|Src homology 3 domain-containing guanine nucleotide exchange factor|rho guanine nucleotide exchange factor 26 20121230 -9606 26085 KLK13 - KLK-L4|KLKL4 HGNC:6361|MIM:605505|Ensembl:ENSG00000167759|HPRD:05693 19 19q13.33 kallikrein-related peptidase 13 protein-coding KLK13 kallikrein-related peptidase 13 O kallikrein 13|kallikrein-13|kallikrein-like gene 4|kallikrein-like protein 4 20121230 -9606 26086 GPSM1 RP13-270L15.1 AGS3 HGNC:17858|MIM:609491|Ensembl:ENSG00000160360|HPRD:17075|Vega:OTTHUMG00000020930 9 9q34.3 G-protein signaling modulator 1 protein-coding GPSM1 G-protein signaling modulator 1 O AGS3 homolog|G-protein signalling modulator 1 (AGS3-like, C. elegans)|G-protein-signaling modulator 1|activator of G-protein signaling 3 20121230 -9606 26088 GGA1 RP1-37E16.3 - HGNC:17842|MIM:606004|Ensembl:ENSG00000100083|HPRD:12078|Vega:OTTHUMG00000030985 22 22q13.31 golgi-associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding GGA1 golgi-associated, gamma adaptin ear containing, ARF binding protein 1 O ADP-ribosylation factor binding protein 1|ADP-ribosylation factor-binding protein GGA1|gamma-adaptin related protein 1|gamma-adaptin-related protein 1|golgi associated, gamma adaptin ear containing, ARF binding protein 1|golgi-localized, gamma ear-containing, ARF-binding protein 1 20121230 -9606 26090 ABHD12 RP5-965G21.2 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2 HGNC:15868|MIM:613599|Ensembl:ENSG00000100997|HPRD:07094|Vega:OTTHUMG00000032121 20 20p11.21 abhydrolase domain containing 12 protein-coding ABHD12 abhydrolase domain containing 12 O 2-arachidonoylglycerol hydrolase|abhydrolase domain-containing protein 12|monoacylglycerol lipase ABHD12 20121230 -9606 26091 HERC4 RP11-57G10.4 - HGNC:24521|MIM:609248|Ensembl:ENSG00000148634|HPRD:13646|Vega:OTTHUMG00000018343 10 10q21.3 HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 O HECT domain and RCC1-like domain-containing protein 4|hect domain and RLD 4|probable E3 ubiquitin-protein ligase HERC4 20121230 -9606 26092 TOR1AIP1 RP11-533E19.1 LAP1|LAP1B HGNC:29456|MIM:614512|Ensembl:ENSG00000143337|HPRD:13958|Vega:OTTHUMG00000035257 1 1q24.2 torsin A interacting protein 1 protein-coding TOR1AIP1 torsin A interacting protein 1 O lamin-associated protein 1B|lamina associated polypeptide 1B|lamina-associated polypeptide 1B|torsin-1A-interacting protein 1 20121230 -9606 26093 CCDC9 - - HGNC:24560|Ensembl:ENSG00000105321|HPRD:10813 19 19q13.32 coiled-coil domain containing 9 protein-coding CCDC9 coiled-coil domain containing 9 O coiled-coil domain-containing protein 9 20121230 -9606 26094 DCAF4 - WDR21|WDR21A HGNC:20229|Ensembl:ENSG00000119599|HPRD:15664|Vega:OTTHUMG00000160542 14 14q24.3 DDB1 and CUL4 associated factor 4 protein-coding DCAF4 DDB1 and CUL4 associated factor 4 O DDB1- and CUL4-associated factor 4|WD repeat domain 21A|WD repeat-containing protein 21A 20121230 -9606 26095 PTPN20B RP11-142I17.1 bA42B19.1 HGNC:23423|MIM:610631|Ensembl:ENSG00000183675|HPRD:10898|Vega:OTTHUMG00000018151 10 10q11.22 protein tyrosine phosphatase, non-receptor type 20B protein-coding PTPN20B protein tyrosine phosphatase, non-receptor type 20B O protein tyrosine phosphatase, non-receptor type 20 20121230 -9606 26097 CHTOP HT031 C1orf77|FL-SRAG|FOP|RP1-178F15.2|SRAG|SRAG-3|SRAG-5|pp7704 HGNC:24511|MIM:614206|Ensembl:ENSG00000160679|HPRD:13163|Vega:OTTHUMG00000037052 1 1q21.3 chromatin target of PRMT1 protein-coding CHTOP chromatin target of PRMT1 O chromatin target of PRMT1 protein|friend of PRMT1 protein|small protein rich in arginine and glycine 20121230 -9606 26098 C10orf137 RP11-383C5.6 EDRF1 HGNC:24640|Ensembl:ENSG00000107938|HPRD:10694|Vega:OTTHUMG00000019233 10 10q26.13 chromosome 10 open reading frame 137 protein-coding C10orf137 chromosome 10 open reading frame 137 O erythroid differentiation-related factor 1 20121230 -9606 26099 SZRD1 - C1orf144 HGNC:30232|Ensembl:ENSG00000055070|HPRD:13213|Vega:OTTHUMG00000002217 1 1p36.13 SUZ RNA binding domain containing 1 protein-coding SZRD1 SUZ RNA binding domain containing 1 O SUZ domain-containing protein 1|UPF0485 protein C1orf144|putative MAPK activating protein PM20,PM21|putative MAPK-activating protein PM18/PM20/PM22 20121230 -9606 26100 WIPI2 CGI-50 ATG18B|Atg21|WIPI-2 HGNC:32225|MIM:609225|Ensembl:ENSG00000157954|HPRD:15679|Vega:OTTHUMG00000121179 7 7p22.1 WD repeat domain, phosphoinositide interacting 2 protein-coding WIPI2 WD repeat domain, phosphoinositide interacting 2 O WD repeat domain phosphoinositide-interacting protein 2|WD40 repeat protein interacting with phosphoinositides 2|WIPI49-like protein 2 20121230 -9606 26101 DKFZP564M1462 - - - 14 14q23.3 DKFZP564M1462 protein protein-coding - - - uncharacterized protein LOC26101 20111026 -9606 26102 DKFZP434A062 - - - 9 9q34.3 uncharacterized LOC26102 miscRNA - - - - 20121230 -9606 26103 LRIT1 - FIGLER9|LRRC21|PAL HGNC:23404|Ensembl:ENSG00000148602|HPRD:14315|Vega:OTTHUMG00000018632 10 10q23 leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 protein-coding LRIT1 leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 O fibronectin type III, immunoglobulin and leucine rich repeat domains 9|leucine rich repeat containing 21|leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1|leucine-rich repeat-containing protein 21|photoreceptor-associated LRR superfamily protein|retina-specific protein PAL 20121230 -9606 26105 DKFZP434C153 - - - 1 1q42.13 DKFZP434C153 protein protein-coding - - - uncharacterized protein LOC26105 20111026 -9606 26106 DKFZP586K1520 - - - 2 2q37.3 DKFZP586K1520 protein protein-coding - - - uncharacterized protein LOC26106 20111026 -9606 26107 DKFZP547J0410 - - - 5 5p13.1 DKFZP547J0410 protein protein-coding - - - - 20111026 -9606 26108 PYGO1 - - HGNC:30256|MIM:606902|Ensembl:ENSG00000171016|HPRD:06064|Vega:OTTHUMG00000132009 15 15q21.1 pygopus homolog 1 (Drosophila) protein-coding PYGO1 pygopus homolog 1 (Drosophila) O pygopus 1|pygopus homolog 1|pygopus-like protein 1 20121230 -9606 26112 CCDC69 - - HGNC:24487|Ensembl:ENSG00000198624|HPRD:13152|Vega:OTTHUMG00000130127 5 5q33.1 coiled-coil domain containing 69 protein-coding CCDC69 coiled-coil domain containing 69 O coiled-coil domain-containing protein 69 20121230 -9606 26115 TANC2 - ROLSA|rols HGNC:30212|Ensembl:ENSG00000170921|Vega:OTTHUMG00000179103 17 17q23.3 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 O protein TANC2|putative ankyrin-repeat containing protein|rolling pebbles homolog B|tetratricopeptide repeat, ankyrin repeat and coiled-coil domain-containing protein 2 20121230 -9606 26118 WSB1 - SWIP1|WSB-1 HGNC:19221|MIM:610091|Ensembl:ENSG00000109046|HPRD:15680|Vega:OTTHUMG00000132293 17 17q11.1 WD repeat and SOCS box containing 1 protein-coding WSB1 WD repeat and SOCS box containing 1 O SOCS box-containing WD protein SWiP-1|WD repeat and SOCS box-containing 1|WD repeat and SOCS box-containing protein 1 20121230 -9606 26119 LDLRAP1 RP11-70P17.2 ARH|ARH1|ARH2|FHCB1|FHCB2 HGNC:18640|MIM:605747|Ensembl:ENSG00000157978|HPRD:05765|Vega:OTTHUMG00000007386 1 1p36-p35 low density lipoprotein receptor adaptor protein 1 protein-coding LDLRAP1 low density lipoprotein receptor adaptor protein 1 O LDL receptor adaptor protein|autosomal recessive hypercholesterolemia protein|low density lipoprotein receptor adapter protein 1 20121230 -9606 26120 DKFZP564C152 - - - 11 - DKFZP564C152 protein protein-coding - - - uncharacterized protein LOC26120 20111026 -9606 26121 PRPF31 - NY-BR-99|PRP31|RP11 HGNC:15446|MIM:606419|Ensembl:ENSG00000105618|HPRD:05917|Vega:OTTHUMG00000066040 19 19q13.42 PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) protein-coding PRPF31 PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) O U4/U6 small nuclear ribonucleoprotein Prp31|U4/U6 snRNP 61 kDa protein|hPrp31|pre-mRNA-processing factor 31|protein 61K|serologically defined breast cancer antigen NY-BR-99 20121230 -9606 26122 EPC2 - EPC-LIKE HGNC:24543|MIM:611000|Ensembl:ENSG00000135999|HPRD:13274|Vega:OTTHUMG00000153739 2 2q23.1 enhancer of polycomb homolog 2 (Drosophila) protein-coding EPC2 enhancer of polycomb homolog 2 (Drosophila) O enhancer of polycomb homolog 2 20121230 -9606 26123 TCTN3 RP11-7D5.3 C10orf61|JBTS18|OFD4|TECT3 HGNC:24519|MIM:613847|Ensembl:ENSG00000119977|HPRD:12582|Vega:OTTHUMG00000018814 10 10q24.1 tectonic family member 3 protein-coding TCTN3 tectonic family member 3 O tectonic-3 20121230 -9606 26127 FGFR1OP2 HSPC123 HSPC123-like|WIT3.0 HGNC:23098|MIM:608858|Ensembl:ENSG00000111790|HPRD:10589|Vega:OTTHUMG00000169231 12 12p11.23 FGFR1 oncogene partner 2 protein-coding FGFR1OP2 FGFR1 oncogene partner 2 O fibroblast growth factor receptor 1 oncogene partner 2|wound inducible transcript 3.0 20121230 -9606 26128 KIAA1279 - KBP|TTC20 HGNC:23419|MIM:609367|Ensembl:ENSG00000198954|HPRD:13848|Vega:OTTHUMG00000018363 10 10q22.1 KIAA1279 protein-coding KIAA1279 KIAA1279 O KIF1-binding protein 20121230 -9606 26130 GAPVD1 RP11-184B22.1 GAPEX5|RAP6 HGNC:23375|MIM:611714|Ensembl:ENSG00000165219|HPRD:10886|Vega:OTTHUMG00000020678 9 9q33.3 GTPase activating protein and VPS9 domains 1 protein-coding GAPVD1 GTPase activating protein and VPS9 domains 1 O GAPex-5|GTPase-activating protein and VPS9 domain-containing protein 1|rab5-activating protein 6 20121230 -9606 26133 TRPC4AP - C20orf188|TRRP4AP|TRUSS HGNC:16181|MIM:608430|Ensembl:ENSG00000100991|HPRD:09238|Vega:OTTHUMG00000032319 20 20q11.22 transient receptor potential cation channel, subfamily C, member 4 associated protein protein-coding TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein O TNF-receptor ubiquitous scaffolding/signaling protein|TRP4-associated protein|short transient receptor potential channel 4 associated protein|short transient receptor potential channel 4-associated protein|trpc4-associated protein|tumor necrosis factor receptor-associated ubiquitous scaffolding and signaling protein 20121230 -9606 26134 RALGAPA1P - GARNL2|GARNL2P|bA235C23.1 HGNC:23203 9 9q31 Ral GTPase activating protein, alpha subunit 1 (catalytic) pseudogene pseudo RALGAPA1P Ral GTPase activating protein, alpha subunit 1 (catalytic) pseudogene O - 20121230 -9606 26135 SERBP1 CGI-55 CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 HGNC:17860|MIM:607378|Ensembl:ENSG00000142864|Vega:OTTHUMG00000009372 1 1p31 SERPINE1 mRNA binding protein 1 protein-coding SERBP1 SERPINE1 mRNA binding protein 1 O PAI-1 mRNA binding protein|PAI1 RNA-binding protein 1|SERPINE1 mRNA-binding protein 1|chromodomain helicase DNA binding protein 3 interacting protein|plasminogen activator inhibitor 1 RNA binding protein|plasminogen activator inhibitor 1 RNA-binding protein 20121230 -9606 26136 TES - TESS|TESS-2 HGNC:14620|MIM:606085|Ensembl:ENSG00000135269|HPRD:05833|Vega:OTTHUMG00000023092 7 7q31.2 testis derived transcript (3 LIM domains) protein-coding TES testis derived transcript (3 LIM domains) O testin 20121230 -9606 26137 ZBTB20 - DPZF|HOF|ODA-8S|ZNF288 HGNC:13503|MIM:606025|Ensembl:ENSG00000181722|HPRD:05822|Vega:OTTHUMG00000159366 3 3q13.2 zinc finger and BTB domain containing 20 protein-coding ZBTB20 zinc finger and BTB domain containing 20 O BTB/POZ zinc finger protein DPZF|dendritic cell-derived BTB/POZ zinc finger|dendritic-derived BTB/POZ zinc finger protein|zinc finger and BTB domain-containing protein 20|zinc finger protein 288 20121230 -9606 26138 LINC00588 - C8orf71 HGNC:24494 8 8q12.1 long intergenic non-protein coding RNA 588 miscRNA LINC00588 long intergenic non-protein coding RNA 588 O - 20121230 -9606 26140 TTLL3 PRO0207 HOTTL HGNC:24483|Ensembl:ENSG00000214021|HPRD:15585|Vega:OTTHUMG00000128439 3 3p25.3 tubulin tyrosine ligase-like family, member 3 protein-coding TTLL3 tubulin tyrosine ligase-like family, member 3 O tubulin monoglycylase TTLL3|tubulin--tyrosine ligase-like protein 3 20121230 -9606 26145 IRF2BP1 - - HGNC:21728|Ensembl:ENSG00000170604|HPRD:17159 19 19q13.32 interferon regulatory factor 2 binding protein 1 protein-coding IRF2BP1 interferon regulatory factor 2 binding protein 1 O IRF-2-binding protein 1|interferon regulatory factor 2-binding protein 1|probable E3 ubiquitin-protein ligase IRF2BP1 20121230 -9606 26146 TRAF3IP1 - MIP-T3|MIPT3 HGNC:17861|MIM:607380|Ensembl:ENSG00000204104|HPRD:09571|Vega:OTTHUMG00000152872 2 2q37.3 TNF receptor-associated factor 3 interacting protein 1 protein-coding TRAF3IP1 TNF receptor-associated factor 3 interacting protein 1 O TRAF3-interacting protein 1|interleukin 13 receptor alpha 1-binding protein-1|interleukin-13 receptor alpha 1-binding protein 1|microtubule interacting protein that associates with TRAF3|microtubule-interacting protein associated with TRAF3|microtubule-interacting protein that associates with TRAF3 20121230 -9606 26147 PHF19 RP11-27I1.1 MTF2L1|PCL3 HGNC:24566|MIM:609740|Ensembl:ENSG00000119403|HPRD:17846|Vega:OTTHUMG00000020577 9 9q33.2 PHD finger protein 19 protein-coding PHF19 PHD finger protein 19 O hPCL3|polycomb like 3|polycomb-like 3|polycomb-like protein 3 20121230 -9606 26148 C10orf12 - - HGNC:23420|Ensembl:ENSG00000155640|HPRD:12563|Vega:OTTHUMG00000018840 10 10q24.1 chromosome 10 open reading frame 12 protein-coding C10orf12 chromosome 10 open reading frame 12 O uncharacterized protein C10orf12 20121230 -9606 26149 ZNF658 RP11-1082I11.2 - HGNC:25226|Ensembl:ENSG00000196409|HPRD:11342|Vega:OTTHUMG00000013392 9 9p13.1 zinc finger protein 658 protein-coding ZNF658 zinc finger protein 658 O - 20121230 -9606 26150 RIBC2 - C22orf11 HGNC:13241|Ensembl:ENSG00000128408|HPRD:11493|Vega:OTTHUMG00000151332 22 22q13.31 RIB43A domain with coiled-coils 2 protein-coding RIBC2 RIB43A domain with coiled-coils 2 O RIB43A-like with coiled-coils protein 2 20121230 -9606 26151 NAT9 - EBSP, hNATL HGNC:23133|Ensembl:ENSG00000109065|HPRD:13259|Vega:OTTHUMG00000178870 17 17q25.1 N-acetyltransferase 9 (GCN5-related, putative) protein-coding NAT9 N-acetyltransferase 9 (GCN5-related, putative) O N-acetyltransferase 9|embryo brain specific protein|embryo brain-specific protein 20121230 -9606 26152 ZNF337 - - HGNC:15809|Ensembl:ENSG00000130684|HPRD:15779|Vega:OTTHUMG00000032131 20 20p11.1 zinc finger protein 337 protein-coding ZNF337 zinc finger protein 337 O - 20121230 -9606 26153 KIF26A - - HGNC:20226|MIM:613231|Ensembl:ENSG00000066735|Vega:OTTHUMG00000154986 14 14q32.33 kinesin family member 26A protein-coding KIF26A kinesin family member 26A O KIF26A variant protein|kinesin-like protein KIF26A 20121230 -9606 26154 ABCA12 - ICR2B|LI2 HGNC:14637|MIM:607800|Ensembl:ENSG00000144452|HPRD:07416|Vega:OTTHUMG00000154801 2 2q34 ATP-binding cassette, sub-family A (ABC1), member 12 protein-coding ABCA12 ATP-binding cassette, sub-family A (ABC1), member 12 O ATP-binding cassette sub-family A member 12|ATP-binding cassette transporter 12 20121230 -9606 26155 NOC2L - NET15|NET7|NIR HGNC:24517|MIM:610770|Ensembl:ENSG00000188976|HPRD:13166|Vega:OTTHUMG00000040720 1 1p36.33 nucleolar complex associated 2 homolog (S. cerevisiae) protein-coding NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) O NOC2-like protein|novel INHAT (inhibitor of histone acetyltransferase) repressor|novel INHAT repressor|nucleolar complex protein 2 homolog|protein NOC2 homolog 20121230 -9606 26156 RSL1D1 L12 CSIG|PBK1|UTP30 HGNC:24534|Ensembl:ENSG00000171490|HPRD:10897|Vega:OTTHUMG00000129824 16 16p13.13 ribosomal L1 domain containing 1 protein-coding RSL1D1 ribosomal L1 domain containing 1 O CATX-11|cellular senescence inhibited gene protein|cellular senescence-inhibited gene protein|ribosomal L1 domain-containing protein 1 20121230 -9606 26157 GIMAP2 - HIMAP2|IMAP2 HGNC:21789|MIM:608085|Ensembl:ENSG00000106560|HPRD:16279|Vega:OTTHUMG00000157488 7 7q36.1 GTPase, IMAP family member 2 protein-coding GIMAP2 GTPase, IMAP family member 2 O GTPase IMAP family member 2|immunity associated protein 2|immunity-associated protein 2 20121230 -9606 26160 IFT172 - SLB|osm-1|wim HGNC:30391|MIM:607386|Ensembl:ENSG00000138002|HPRD:09576|Vega:OTTHUMG00000128425 2 2p23.3 intraflagellar transport 172 homolog (Chlamydomonas) protein-coding IFT172 intraflagellar transport 172 homolog (Chlamydomonas) O intraflagellar transport protein 172 homolog|selective LIM binding factor homolog|wimple homolog 20121230 -9606 26164 GTPBP5 RP5-1005F21.5 ObgH1|dJ1005F21.2 HGNC:16239|MIM:610919|Ensembl:ENSG00000101181|HPRD:13617|Vega:OTTHUMG00000032897 20 20q13.33 GTP binding protein 5 (putative) protein-coding GTPBP5 GTP binding protein 5 (putative) O GTP-binding protein 5|GTP-binding protein 5 (putative)|protein obg homolog 1 20121230 -9606 26165 SPATA31A7 - C9orf36A|FAM75A7 HGNC:32007|Ensembl:ENSG00000234734|HPRD:12954|Vega:OTTHUMG00000013196 9 9q12 SPATA31 subfamily A, member 7 protein-coding SPATA31A7 SPATA31 subfamily A, member 7 O family with sequence similarity 75, member A7|protein FAM75A7 20121216 -9606 26166 RGS22 - PRTD-NY2 HGNC:24499|Ensembl:ENSG00000132554|HPRD:13155|Vega:OTTHUMG00000164802 8 8q22.2 regulator of G-protein signaling 22 protein-coding RGS22 regulator of G-protein signaling 22 O - 20121230 -9606 26167 PCDHB5 - PCDH-BETA5 HGNC:8690|MIM:606331|Ensembl:ENSG00000113209|HPRD:07560|Vega:OTTHUMG00000129616 5 5q31 protocadherin beta 5 protein-coding PCDHB5 protocadherin beta 5 O PCDH-beta-5|protocadherin beta-5 20121230 -9606 26168 SENP3 - SMT3IP1|SSP3|Ulp1 HGNC:17862|MIM:612844|Ensembl:ENSG00000161956|HPRD:08339|Vega:OTTHUMG00000178333 17 17p13 SUMO1/sentrin/SMT3 specific peptidase 3 protein-coding SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 O SUMO-1-specific protease 3|sentrin-specific protease 3|sentrin/SUMO-specific protease 3 20121230 -9606 26173 INTS1 UNQ1821/PRO3434 INT1|NET28 HGNC:24555|MIM:611345|Ensembl:ENSG00000164880|Vega:OTTHUMG00000151449 7 7p22.3 integrator complex subunit 1 protein-coding INTS1 integrator complex subunit 1 O - 20121230 -9606 26175 TMEM251 - C14orf109 HGNC:20218|Ensembl:ENSG00000153485|Vega:OTTHUMG00000171265 14 14q32.12 transmembrane protein 251 protein-coding TMEM251 transmembrane protein 251 O UPF0694 transmembrane protein C14orf109 20121230 -9606 26176 FEOM3 - CFEOM3|CFEOM3A HGNC:3654 16 16q24.2-q24.3 fibrosis of extraocular muscles, congenital, 3 unknown FEOM3 fibrosis of extraocular muscles, congenital, 3 O - 20120622 -9606 26184 OR1F2P - OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 HGNC:8196 16 16p13.3 olfactory receptor, family 1, subfamily F, member 2 pseudo OR1F2P olfactory receptor, family 1, subfamily F, member 2 O - 20121230 -9606 26188 OR1C1 - HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27 HGNC:8182|Ensembl:ENSG00000221888|HPRD:14914|Vega:OTTHUMG00000040198 1 1q44 olfactory receptor, family 1, subfamily C, member 1 protein-coding OR1C1 olfactory receptor, family 1, subfamily C, member 1 O olfactory receptor 1C1|olfactory receptor OR1-42|olfactory receptor TPCR27 20121230 -9606 26189 OR1A2 - OR17-6 HGNC:8180|Ensembl:ENSG00000172150|HPRD:17682|Vega:OTTHUMG00000090638 17 17p13.3 olfactory receptor, family 1, subfamily A, member 2 protein-coding OR1A2 olfactory receptor, family 1, subfamily A, member 2 O olfactory receptor 17-6|olfactory receptor 1A2|olfactory receptor OR17-10 20121230 -9606 26190 FBXW2 RP11-88M19.2 FBW2|Fwd2|Md6 HGNC:13608|MIM:609071|Ensembl:ENSG00000119402|HPRD:09950|Vega:OTTHUMG00000020576 9 9q34 F-box and WD repeat domain containing 2 protein-coding FBXW2 F-box and WD repeat domain containing 2 O F-box and WD-40 domain protein 2|F-box and WD-40 domain-containing protein 2|F-box/WD repeat-containing protein 2 20121230 -9606 26191 PTPN22 - LYP|LYP1|LYP2|PEP|PTPN8 HGNC:9652|MIM:600716|Ensembl:ENSG00000134242|HPRD:06100|Vega:OTTHUMG00000011936 1 1p13.2 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) protein-coding PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) O PEST-domain phosphatase|hematopoietic cell protein-tyrosine phosphatase 70Z-PEP|lymphoid phosphatase|lymphoid-specific protein tyrosine phosphatase|protein tyrosine phosphatase, non-receptor type 8|tyrosine-protein phosphatase non-receptor type 22 20121230 -9606 26205 GMEB2 RP4-663D7.1 P79PIF|PIF79 HGNC:4371|MIM:607451|Ensembl:ENSG00000101216|HPRD:16245|Vega:OTTHUMG00000032988 20 20q13.33 glucocorticoid modulatory element binding protein 2 protein-coding GMEB2 glucocorticoid modulatory element binding protein 2 O DNA-binding protein p79PIF|GMEB-2|PIF p79|glucocorticoid modulatory element-binding protein 2|parvovirus initiation factor p79|parvovirus initiation factor, p79 20121230 -9606 26206 SPAG8 - BS-84|HSD-1|SMP1|SPAG3|hSMP-1 HGNC:14105|MIM:605731|Ensembl:ENSG00000137098|HPRD:12039|Vega:OTTHUMG00000019875 9 9p13.3 sperm associated antigen 8 protein-coding SPAG8 sperm associated antigen 8 O sperm membrane protein 1|sperm membrane protein BS-84|sperm-associated antigen 8 20121230 -9606 26207 PITPNC1 - M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 HGNC:21045|MIM:605134|Ensembl:ENSG00000154217|HPRD:05504|Vega:OTTHUMG00000179602 17 17q24.2 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 O M-rdgB beta|cytoplasmic phosphatidylinositol transfer protein 1|mammalian rdgB homolog beta|retinal degeneration B beta 1|retinal degeneration B homolog beta 20121230 -9606 26211 OR2F1 tcag7.746 OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 HGNC:8246|MIM:608497|Ensembl:ENSG00000213215|HPRD:16340|Vega:OTTHUMG00000157771 7 7q35 olfactory receptor, family 2, subfamily F, member 1 protein-coding OR2F1 olfactory receptor, family 2, subfamily F, member 1 O olfactory receptor 2F1|olfactory receptor 2F3|olfactory receptor 2F4|olfactory receptor 2F5|olfactory receptor OR7-7|olfactory receptor, family 2, subfamily F, member 3|olfactory receptor, family 2, subfamily F, member 4|olfactory receptor, family 2, subfamily F, member 5|olfactory receptor-like protein OLF3 20121230 -9606 26212 OR2B6 - OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 HGNC:8241|Ensembl:ENSG00000124657|HPRD:17696|Vega:OTTHUMG00000014497 6 6p21.3 olfactory receptor, family 2, subfamily B, member 6 protein-coding OR2B6 olfactory receptor, family 2, subfamily B, member 6 O hs6M1-32|olfactory receptor 2B1|olfactory receptor 2B5|olfactory receptor 2B6|olfactory receptor 5-40|olfactory receptor 6-31|olfactory receptor OR6-4|olfactory receptor, family 2, subfamily B, member 1 pseudogene|olfactory receptor, family 2, subfamily B, member 5|olfactory receptor, family 2, subfamily B, member 6 pseudogene 20121230 -9606 26219 OR1J4 RP11-542K23.5 HSHTPCRX01|HTPCRX01|OR9-21 HGNC:8211|Ensembl:ENSG00000239590|HPRD:14918|Vega:OTTHUMG00000020606 9 9q34.11 olfactory receptor, family 1, subfamily J, member 4 protein-coding OR1J4 olfactory receptor, family 1, subfamily J, member 4 O olfactory receptor 1J4|olfactory receptor OR9-21 20121230 -9606 26220 DGCR5 - LINC00037|NCRNA00037 HGNC:16757 22 22q11 DiGeorge syndrome critical region gene 5 (non-protein coding) miscRNA DGCR5 DiGeorge syndrome critical region gene 5 (non-protein coding) O - 20121230 -9606 26222 DGCR10 - DGS-B HGNC:17864 22 22q11 DiGeorge syndrome critical region gene 10 (non-protein coding) miscRNA DGCR10 DiGeorge syndrome critical region gene 10 (non-protein coding) O - 20121230 -9606 26223 FBXL21 - FBL3B|FBXL3B|FBXL3P|Fbl21 HGNC:13600|MIM:609087|HPRD:16431 5 5q31 F-box and leucine-rich repeat protein 21 (gene/pseudogene) protein-coding FBXL21 F-box and leucine-rich repeat protein 21 (gene/pseudogene) O F-box and leucine-rich repeat protein 3 pseudogene|F-box and leucine-rich repeat protein 3B|F-box protein Fbl3b|F-box/LRR-repeat protein 21|F-box/LRR-repeat protein 3B 20121230 -9606 26224 FBXL3 - FBL3|FBL3A|FBXL3A HGNC:13599|MIM:605653|Ensembl:ENSG00000005812|HPRD:05737|Vega:OTTHUMG00000017099 13 13q22 F-box and leucine-rich repeat protein 3 protein-coding FBXL3 F-box and leucine-rich repeat protein 3 O F-box and leucine-rich repeat protein 3A|F-box protein Fbl3a|F-box/LRR-repeat protein 3|F-box/LRR-repeat protein 3A 20121230 -9606 26225 ARL5A - ARFLP5|ARL5 HGNC:696|MIM:608960|Ensembl:ENSG00000162980|HPRD:12343|Vega:OTTHUMG00000131887 2 2q23.3 ADP-ribosylation factor-like 5A protein-coding ARL5A ADP-ribosylation factor-like 5A O ADP-ribosylation factor-like 5|ADP-ribosylation factor-like protein 5|ADP-ribosylation factor-like protein 5A 20121230 -9606 26226 FBXW4P1 - FBW3|FBXW3|SHFM3P1 HGNC:13609 22 22q11 F-box and WD repeat domain containing 4 pseudogene 1 pseudo FBXW4P1 F-box and WD repeat domain containing 4 pseudogene 1 O - 20121230 -9606 26227 PHGDH RP4-683H9.1 3-PGDH|3PGDH|PDG|PGAD|PGD|PGDH|SERA HGNC:8923|MIM:606879|Ensembl:ENSG00000092621|HPRD:06047|Vega:OTTHUMG00000012100 1 1p12 phosphoglycerate dehydrogenase protein-coding PHGDH phosphoglycerate dehydrogenase O 3-phosphoglycerate dehydrogenase|D-3-phosphoglycerate dehydrogenase 20121230 -9606 26228 STAP1 - BRDG1|STAP-1 HGNC:24133|MIM:604298|Ensembl:ENSG00000035720|HPRD:16053|Vega:OTTHUMG00000129304 4 4q13.2 signal transducing adaptor family member 1 protein-coding STAP1 signal transducing adaptor family member 1 O BCR downstream signaling 1|BCR downstream-signaling protein 1|docking protein BRDG1|signal-transducing adaptor protein 1|signal-transducing adaptor protein-1|stem cell adaptor protein 1 20121230 -9606 26229 B3GAT3 - GLCATI HGNC:923|MIM:606374|Ensembl:ENSG00000149541|HPRD:07564|Vega:OTTHUMG00000167685 11 11q12.3 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) protein-coding B3GAT3 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) O Sqv-8-like protein|UDP-GlcUA:Gal beta-1,3-Gal-R glucuronyltransferase|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3|glcUAT-I 20121230 -9606 26230 TIAM2 RP3-414L4.2 STEF|TIAM-2 HGNC:11806|MIM:604709|Ensembl:ENSG00000146426|HPRD:05273|Vega:OTTHUMG00000015880 6 6q25.2 T-cell lymphoma invasion and metastasis 2 protein-coding TIAM2 T-cell lymphoma invasion and metastasis 2 O SIF and TIAM1-like exchange factor|T-lymphoma invasion and metastasis-inducing protein 2 20121230 -9606 26231 LRRC29 - FBL9|FBXL9 HGNC:13605|Ensembl:ENSG00000125122|HPRD:14317|Vega:OTTHUMG00000154403 16 16q22.1 leucine rich repeat containing 29 protein-coding LRRC29 leucine rich repeat containing 29 O F-box and leucine-rich repeat protein 9|F-box protein FBL9|F-box/LRR-repeat protein 9|leucine-rich repeat-containing protein 29 20121230 -9606 26232 FBXO2 - FBG1|FBX2|Fbs1|NFB42|OCP1 HGNC:13581|MIM:607112|Ensembl:ENSG00000116661|HPRD:06171|Vega:OTTHUMG00000002072 1 1p36.22 F-box protein 2 protein-coding FBXO2 F-box protein 2 O F-box gene 1|F-box only protein 2|organ of Corti protein 1 20121230 -9606 26233 FBXL6 - FBL6|FBL6A|PP14630 HGNC:13603|MIM:609076|Ensembl:ENSG00000182325|HPRD:16429|Vega:OTTHUMG00000165169 8 8q24.3 F-box and leucine-rich repeat protein 6 protein-coding FBXL6 F-box and leucine-rich repeat protein 6 O F-box protein Fbl6|F-box/LRR-repeat protein 6 20121230 -9606 26234 FBXL5 - FBL4|FBL5|FLR1 HGNC:13602|MIM:605655|Ensembl:ENSG00000118564|HPRD:05739|Vega:OTTHUMG00000097097 4 4p15.32 F-box and leucine-rich repeat protein 5 protein-coding FBXL5 F-box and leucine-rich repeat protein 5 O F-box protein FBL4/FBL5|F-box protein FBL5|F-box/LRR-repeat protein 5|p45SKP2-like protein 20121230 -9606 26235 FBXL4 - FBL4|FBL5 HGNC:13601|MIM:605654|Ensembl:ENSG00000112234|HPRD:05738|Vega:OTTHUMG00000015259 6 6q16.1-q16.3 F-box and leucine-rich repeat protein 4 protein-coding FBXL4 F-box and leucine-rich repeat protein 4 O F-box protein FBL4|F-box protein FBL4/FBL5|F-box/LRR-repeat protein 4 20121230 -9606 26238 C6orf123 - HGC6.2|RP3-431P23.4|dJ431P23.4 HGNC:21235|HPRD:12846 6 6q27 chromosome 6 open reading frame 123 miscRNA C6orf123 chromosome 6 open reading frame 123 O - 20121230 -9606 26239 LCE2B - LEP10|SPRL1B|XP5 HGNC:16610|MIM:612610|Ensembl:ENSG00000159455|HPRD:17260|Vega:OTTHUMG00000012404 1 1q21 late cornified envelope 2B protein-coding LCE2B late cornified envelope 2B O late cornified envelope protein 2B|late envelope protein 10|skin-specific protein Xp5|small proline rich-like (epidermal differentiation complex) 1B|small proline-rich-like epidermal differentiation complex protein 1B 20121230 -9606 26240 FAM50B - D6S2654E|X5L HGNC:18789|MIM:614686|Ensembl:ENSG00000145945|HPRD:16883|Vega:OTTHUMG00000014147 6 6p25.2 family with sequence similarity 50, member B protein-coding FAM50B family with sequence similarity 50, member B O protein FAM50B 20121230 -9606 26242 OR4C1P - HSHTPCRX11|HTPCRX11|OR4C1 HGNC:8292 11 11q11 olfactory receptor, family 4, subfamily C, member 1 pseudogene pseudo OR4C1P olfactory receptor, family 4, subfamily C, member 1 pseudogene O - 20121230 -9606 26245 OR2M4 - HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 HGNC:8270|Ensembl:ENSG00000171180|HPRD:14946|Vega:OTTHUMG00000040456 1 1q44 olfactory receptor, family 2, subfamily M, member 4 protein-coding OR2M4 olfactory receptor, family 2, subfamily M, member 4 O novel 7 transmembrane receptor (rhodopsin family) protein|olfactory receptor 2M4|olfactory receptor OR1-55|olfactory receptor TPCR100 20121230 -9606 26246 OR2L2 - HSHTPCRH07|HTPCRH07|OR1-48|OR2L12|OR2L4P HGNC:8266|Ensembl:ENSG00000203663|HPRD:14942|Vega:OTTHUMG00000040214 1 1q44 olfactory receptor, family 2, subfamily L, member 2 protein-coding OR2L2 olfactory receptor, family 2, subfamily L, member 2 O olfactory receptor 2L12|olfactory receptor 2L2|olfactory receptor 2L4|olfactory receptor OR1-48 pseudogene|olfactory receptor, family 2, subfamily L, member 12|olfactory receptor, family 2, subfamily L, member 4 pseudogene 20121230 -9606 26247 OR2L1P - HSHTPCRX02|HTPCRX02|OR2L1|OR2L7P HGNC:8265 1 1q44 olfactory receptor, family 2, subfamily L, member 1 pseudogene pseudo OR2L1P olfactory receptor, family 2, subfamily L, member 1 pseudogene O - 20121230 -9606 26248 OR2K2 - HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P HGNC:8264|Ensembl:ENSG00000171133|HPRD:17701|Vega:OTTHUMG00000020488 9 9q31.3 olfactory receptor, family 2, subfamily K, member 2 protein-coding OR2K2 olfactory receptor, family 2, subfamily K, member 2 O olfactory receptor 2K2|olfactory receptor OR9-17|olfactory receptor, family 2, subfamily AN, member 1 pseudogene|olfactory receptor, family 2, subfamily AR, member 1 pseudogene 20121230 -9606 26249 KLHL3 - PHA2D HGNC:6354|MIM:605775|Ensembl:ENSG00000146021|HPRD:09011|Vega:OTTHUMG00000129155 5 5q31 kelch-like 3 (Drosophila) protein-coding KLHL3 kelch-like 3 (Drosophila) O kelch-like protein 3 20121230 -9606 26251 KCNG2 - KCNF2|KV6.2 HGNC:6249|MIM:605696|Ensembl:ENSG00000178342|HPRD:12036|Vega:OTTHUMG00000044541 18 18q23 potassium voltage-gated channel, subfamily G, member 2 protein-coding KCNG2 potassium voltage-gated channel, subfamily G, member 2 O cardiac potassium channel subunit|potassium voltage-gated channel subfamily G member 2|voltage-gated potassium channel subunit Kv6.2 20121230 -9606 26253 CLEC4E UNQ218/PRO244 CLECSF9|MINCLE HGNC:14555|MIM:609962|Ensembl:ENSG00000166523|HPRD:13075|Vega:OTTHUMG00000168675 12 12p13.31 C-type lectin domain family 4, member E protein-coding CLEC4E C-type lectin domain family 4, member E O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 9|C-type lectin domain family 4 member E|C-type lectin superfamily member 9|macrophage-inducible C-type lectin 20121230 -9606 26254 OPTC RP11-91B9.2 OPT HGNC:8158|MIM:605127|Ensembl:ENSG00000188770|HPRD:05498|Vega:OTTHUMG00000036100 1 1q32.1 opticin protein-coding OPTC opticin O oculoglycan 20121230 -9606 26255 PTTG3P - PTTG3|rcPTTG1 HGNC:13422 8 8q13.1 pituitary tumor-transforming 3, pseudogene pseudo PTTG3P pituitary tumor-transforming 3, pseudogene O - 20121230 -9606 26256 CABYR - CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2 HGNC:15569|MIM:612135|Ensembl:ENSG00000154040|HPRD:10806|Vega:OTTHUMG00000037365 18 18q11.2 calcium binding tyrosine-(Y)-phosphorylation regulated protein-coding CABYR calcium binding tyrosine-(Y)-phosphorylation regulated O calcium binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)|calcium-binding protein 86|calcium-binding tyrosine phosphorylation-regulated protein|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)|cancer/testis antigen 88|fibrousheathin 2|fibrousheathin II|fibrousheathin-2|testis-specific calcium-binding protein CBP86 20121230 -9606 26257 NKX2-8 - NKX2.8|NKX2H|Nkx2-9 HGNC:16364|MIM:603245|Ensembl:ENSG00000136327|HPRD:04456|Vega:OTTHUMG00000028772 14 14q13.3 NK2 homeobox 8 protein-coding NKX2-8 NK2 homeobox 8 O NK-2 homolog 8|NK-2 homolog H|NK2 transcription factor related, locus 8|homeobox protein NK-2 homolog H|homeobox protein Nkx-2.8 20121230 -9606 26258 BLOC1S6 - HPS9|PA|PALLID|PLDN HGNC:8549|MIM:604310|Ensembl:ENSG00000104164|HPRD:16055|Vega:OTTHUMG00000131477 15 15q21.1 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin protein-coding BLOC1S6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin O biogenesis of lysosomal organelles complex-1, subunit 5, pallidin|pallid protein homolog|pallidin|syntaxin 13 binding protein 1|syntaxin 13-interacting protein pallid 20121230 -9606 26259 FBXW8 - FBW6|FBW8|FBX29|FBXO29|FBXW6 HGNC:13597|MIM:609073|Ensembl:ENSG00000174989|HPRD:16427|Vega:OTTHUMG00000169329 12 12q24.22 F-box and WD repeat domain containing 8 protein-coding FBXW8 F-box and WD repeat domain containing 8 O F-box and WD-40 domain protein 8|F-box and WD-40 domain-containing protein 8|F-box only protein 29|F-box/WD repeat-containing protein 8 20121230 -9606 26260 FBXO25 - FBX25 HGNC:13596|MIM:609098|Ensembl:ENSG00000147364|HPRD:16439|Vega:OTTHUMG00000090341 8 8p23.3 F-box protein 25 protein-coding FBXO25 F-box protein 25 O F-box only protein 25|F-box protein Fbx25 20121230 -9606 26261 FBXO24 - FBX24 HGNC:13595|MIM:609097|Ensembl:ENSG00000106336|HPRD:16438|Vega:OTTHUMG00000159543 7 7q22 F-box protein 24 protein-coding FBXO24 F-box protein 24 O F-box only protein 24|F-box protein Fbx24 20121230 -9606 26262 TSPAN17 - FBX23|FBXO23|TM4SF17 HGNC:13594|Ensembl:ENSG00000048140|HPRD:18198|Vega:OTTHUMG00000163230 5 5q35.3 tetraspanin 17 protein-coding TSPAN17 tetraspanin 17 O F-box only protein 23, transmembrane 4 superfamily member 17|tetraspan protein SB134|tetraspanin-17|tspan-17 20121230 -9606 26263 FBXO22 - FBX22|FISTC1 HGNC:13593|MIM:609096|Ensembl:ENSG00000167196|HPRD:16437|Vega:OTTHUMG00000142841 15 15q24.2 F-box protein 22 protein-coding FBXO22 F-box protein 22 O F-box only protein 22|F-box protein FBX22p44|FIST domain containing 1 20121230 -9606 26266 SLC13A4 - SUT-1|SUT1 HGNC:15827|MIM:604309|Ensembl:ENSG00000164707|HPRD:10372|Vega:OTTHUMG00000155539 7 7q33 solute carrier family 13 (sodium/sulfate symporters), member 4 protein-coding SLC13A4 solute carrier family 13 (sodium/sulfate symporters), member 4 O Na(+)/sulfate cotransporter SUT-1|naS2|solute carrier family 13 (sodium/sulphate symporters), member 4|solute carrier family 13 member 4|sulphate transporter 1 20121230 -9606 26267 FBXO10 hCG_2011110 FBX10|PRMT11 HGNC:13589|MIM:609092|Ensembl:ENSG00000147912|Vega:OTTHUMG00000019926 9 9p13.2 F-box protein 10 protein-coding FBXO10 F-box protein 10 O F-box only protein 10|F-box protein Fbx10 20121230 -9606 26268 FBXO9 - FBX9|NY-REN-57|VCIA1|dJ341E18.2 HGNC:13588|MIM:609091|Ensembl:ENSG00000112146|HPRD:16434|Vega:OTTHUMG00000014869 6 6p12.3-p11.2 F-box protein 9 protein-coding FBXO9 F-box protein 9 O F-box only protein 9|F-box protein Fbx9|cross-immune reaction antigen 1|renal carcinoma antigen NY-REN-57 20121230 -9606 26269 FBXO8 DC10 FBS|FBX8 HGNC:13587|MIM:605649|Ensembl:ENSG00000164117|HPRD:07293|Vega:OTTHUMG00000160746 4 4q34.1 F-box protein 8 protein-coding FBXO8 F-box protein 8 O F-box only protein 8|F-box protein Fbx8|F-box/SEC7 protein FBS 20121230 -9606 26270 FBXO6 RP3-330O12.3 FBG2|FBS2|FBX6|Fbx6b HGNC:13585|MIM:605647|Ensembl:ENSG00000116663|HPRD:07291|Vega:OTTHUMG00000002229 1 1p36.22 F-box protein 6 protein-coding FBXO6 F-box protein 6 O F-box only protein 6|F-box protein FBG2|F-box protein Fbx6|F-box protein that recognizes sugar chains 2|F-box/G-domain protein 2 20121230 -9606 26271 FBXO5 RP1-101K10.5 EMI1|FBX5|Fbxo31 HGNC:13584|MIM:606013|Ensembl:ENSG00000112029|HPRD:09348|Vega:OTTHUMG00000015854 6 6q25.2 F-box protein 5 protein-coding FBXO5 F-box protein 5 O F-box only protein 5|F-box protein Fbx5|early mitotic inhibitor 1 20121230 -9606 26272 FBXO4 - FBX4 HGNC:13583|MIM:609090|Ensembl:ENSG00000151876|HPRD:09949|Vega:OTTHUMG00000094799 5 5p12 F-box protein 4 protein-coding FBXO4 F-box protein 4 O F-box only protein 4|F-box protein Fbx4 20121230 -9606 26273 FBXO3 - FBA|FBX3 HGNC:13582|MIM:609089|Ensembl:ENSG00000110429|HPRD:16433|Vega:OTTHUMG00000166244 11 11p13 F-box protein 3 protein-coding FBXO3 F-box protein 3 O F-box only protein 3|F-box protein FBX3 20121230 -9606 26275 HIBCH - HIBYLCOAH HGNC:4908|MIM:610690|Ensembl:ENSG00000198130|HPRD:11023|Vega:OTTHUMG00000132673 2 2q32.2 3-hydroxyisobutyryl-CoA hydrolase protein-coding HIBCH 3-hydroxyisobutyryl-CoA hydrolase O 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial|3-hydroxyisobutyryl-Coenzyme A hydrolase|HIB-CoA hydrolase|HIBYL-CoA-H 20121230 -9606 26276 VPS33B - - HGNC:12712|MIM:608552|Ensembl:ENSG00000184056|HPRD:10541|Vega:OTTHUMG00000149835 15 15q26.1 vacuolar protein sorting 33 homolog B (yeast) protein-coding VPS33B vacuolar protein sorting 33 homolog B (yeast) O hVPS33B|vacuolar protein sorting 33B|vacuolar protein sorting-associated protein 33B 20121230 -9606 26277 TINF2 - DKCA3|TIN2 HGNC:11824|MIM:604319|Ensembl:ENSG00000092330|HPRD:16056|Vega:OTTHUMG00000171849 14 14q12 TERF1 (TRF1)-interacting nuclear factor 2 protein-coding TINF2 TERF1 (TRF1)-interacting nuclear factor 2 O TERF1-interacting nuclear factor 2|TRF1-interacting nuclear protein 2 20121230 -9606 26278 SACS - ARSACS|DNAJC29 HGNC:10519|MIM:604490|Ensembl:ENSG00000151835|HPRD:05135|Vega:OTTHUMG00000016562 13 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) protein-coding SACS spastic ataxia of Charlevoix-Saguenay (sacsin) O dnaJ homolog subfamily C member 29|sacsin 20121230 -9606 26279 PLA2G2D UNQ768 PLA2IID|SPLASH|sPLA2-IID|sPLA2S HGNC:9033|MIM:605630|Ensembl:ENSG00000117215|HPRD:07546|Vega:OTTHUMG00000002701 1 1p36.12 phospholipase A2, group IID protein-coding PLA2G2D phospholipase A2, group IID O GIID sPLA2|group IID secretory phospholipase A2|phosphatidylcholine 2-acylhydrolase 2D|secretory phospholipase A2s|secretory-type PLA, stroma-associated homolog 20121230 -9606 26280 IL1RAPL2 - IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 HGNC:5997|MIM:300277|Ensembl:ENSG00000189108|HPRD:02231|Vega:OTTHUMG00000022141 X Xq22 interleukin 1 receptor accessory protein-like 2 protein-coding IL1RAPL2 interleukin 1 receptor accessory protein-like 2 O IL-1 receptor accessory protein-like 2|IL-1R-9|IL1RAPL-2-related protein|X-linked interleukin-1 receptor accessory protein-like 2|interleukin 1 receptor 9|three immunoglobulin domain-containing IL-1 receptor-related 1 20121230 -9606 26281 FGF20 - FGF-20 HGNC:3677|MIM:605558|Ensembl:ENSG00000078579|HPRD:05709|Vega:OTTHUMG00000096964 8 8p22 fibroblast growth factor 20 protein-coding FGF20 fibroblast growth factor 20 O - 20121230 -9606 26284 ERAL1 - ERA|ERAL1A|H-ERA|HERA-A|HERA-B HGNC:3424|MIM:607435|Ensembl:ENSG00000132591|HPRD:08466|Vega:OTTHUMG00000132675 17 17q11.2 Era G-protein-like 1 (E. coli) protein-coding ERAL1 Era G-protein-like 1 (E. coli) O CEGA|ERA-W|ERA-like protein 1|GTP-binding protein era homolog|GTPase Era, mitochondrial|GTPase, human homolog of E. coli essential cell cycle protein Era|conserved ERA-like GTPase|era (E. coli G-protein homolog)-like 1|hERA 20121230 -9606 26285 CLDN17 UNQ758 - HGNC:2038|Ensembl:ENSG00000156282|HPRD:10833|Vega:OTTHUMG00000081873 21 21q22.11 claudin 17 protein-coding CLDN17 claudin 17 O claudin-17|human CLDN17 gene for claudin-17 20121230 -9606 26286 ARFGAP3 AL049757.1 ARFGAP1 HGNC:661|MIM:612439|Ensembl:ENSG00000242247|HPRD:06444|Vega:OTTHUMG00000150718 22 22q13.2 ADP-ribosylation factor GTPase activating protein 3 protein-coding ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 O ADP-ribosylation factor GTPase activating protein 1|ADP-ribosylation factor GTPase-activating protein 3|ARF GAP 3 20121230 -9606 26287 ANKRD2 RP11-548K23.2 ARPP HGNC:495|MIM:610734|Ensembl:ENSG00000165887|HPRD:12460|Vega:OTTHUMG00000018860 10 10q23 ankyrin repeat domain 2 (stretch responsive muscle) protein-coding ANKRD2 ankyrin repeat domain 2 (stretch responsive muscle) O ankyrin repeat domain-containing protein 2|ankyrin-repeat protein|hArpp|skeletal muscle ankyrin repeat protein 20121230 -9606 26289 AK5 - AK6 HGNC:365|MIM:608009|Ensembl:ENSG00000154027|HPRD:10472|Vega:OTTHUMG00000009796 1 1p31 adenylate kinase 5 protein-coding AK5 adenylate kinase 5 O AK 5|ATP-AMP transphosphorylase 5|adenylate kinase 6|adenylate kinase isoenzyme 5 20121230 -9606 26290 GALNT8 - GALNAC-T8 HGNC:4130|MIM:606250|Ensembl:ENSG00000130035|HPRD:09374|Vega:OTTHUMG00000166188 12 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) protein-coding GALNT8 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) O GalNAc transferase 8|UDP-GalNAc: polypeptide N-acetylgalactosaminyltransferase 8|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 8|polypeptide GalNAc transferase 8|polypeptide N-acetylgalactosaminyltransferase 8|pp-GaNTase 8|probable polypeptide N-acetylgalactosaminyltransferase 8|protein-UDP acetylgalactosaminyltransferase 8 20121230 -9606 26291 FGF21 UNQ3115/PRO10196 - HGNC:3678|MIM:609436|Ensembl:ENSG00000105550|HPRD:09447 19 19q13.33 fibroblast growth factor 21 protein-coding FGF21 fibroblast growth factor 21 O FGF-21 20121230 -9606 26292 MYCBP - AMY-1 HGNC:7554|MIM:606535|Ensembl:ENSG00000214114|HPRD:08406|Vega:OTTHUMG00000000484 1 1p33-p32.2 c-myc binding protein protein-coding MYCBP c-myc binding protein O C-Myc-binding protein|associate of myc-1 20121230 -9606 26297 SERGEF - DELGEF|Gnefr HGNC:17499|MIM:606051|Ensembl:ENSG00000129158|HPRD:06926|Vega:OTTHUMG00000166420 11 11p14.3 secretion regulating guanine nucleotide exchange factor protein-coding SERGEF secretion regulating guanine nucleotide exchange factor O deafness locus associated putative guanine nucleotide exchange factor|deafness locus-associated putative guanine nucleotide exchange factor|guanine nucleotide exchange factor-related protein|secretion-regulating guanine nucleotide exchange factor 20121230 -9606 26298 EHF - ESE3|ESE3B|ESEJ HGNC:3246|MIM:605439|Ensembl:ENSG00000135373|HPRD:16105|Vega:OTTHUMG00000166454 11 11p12 ets homologous factor protein-coding EHF ets homologous factor O ESE3 transcription factor|ETS domain-containing transcription factor|ETS homologous factor|epithelium-specific Ets transcription factor 3|hEHF 20121230 -9606 26300 DYX4 - - HGNC:3111 6 6q13-q16.2 dyslexia susceptibility 4 unknown DYX4 dyslexia susceptibility 4 O - 20110215 -9606 26301 GBGT1 RP11-326L24.6 A3GALNT|FS|UNQ2513 HGNC:20460|MIM:606074|Ensembl:ENSG00000148288|HPRD:16193|Vega:OTTHUMG00000020853 9 9q34.13-q34.3 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 protein-coding GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 O Forssman glycolipid synthetase (FS)|Forssman synthetase|forssman glycolipid synthase-like protein 20121230 -9606 26307 PCDHA14 - CNR3|CNRN3|CNRS3|CRNR3|PCDH-PSI4 HGNC:2163 5 5q31 protocadherin alpha 14 pseudogene pseudo PCDHA14 protocadherin alpha 14 pseudogene O - 20121230 -9606 26322 OR4H6P - OR14-58|OR15-69|OR15-71|OR15-80|OR15-81|OR15-82|OR4-114|OR4-115|OR4-119|OR4H10|OR4H10P|OR4H11|OR4H11P|OR4H1P|OR4H2|OR4H2P|OR4H3|OR4H3P|OR4H4|OR4H4P|OR4H5|OR4H5P|OR4H6|OR4H7|OR4H7P|OR4H8|OR4H8P|OR4H9|OR4H9P|OR5-39|OR5-84 HGNC:8312 15 15q11.2 olfactory receptor, family 4, subfamily H, member 6 pseudogene pseudo OR4H6P olfactory receptor, family 4, subfamily H, member 6 pseudogene O - 20121230 -9606 26330 GAPDHS HSD35 GAPD2|GAPDH-2|GAPDS|HSD-35 HGNC:24864|MIM:609169|Ensembl:ENSG00000105679|HPRD:13566|Vega:OTTHUMG00000182298 19 19q13.12 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic protein-coding GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic O glyceraldehyde-3-phosphate dehydrogenase, testis-specific|spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2|spermatogenic glyceraldehyde-3-phosphate dehydrogenase 20121230 -9606 26333 OR7A17 - BC85395_4|HTPCRX19 HGNC:8363|Ensembl:ENSG00000185385|HPRD:17781 19 19p13.12 olfactory receptor, family 7, subfamily A, member 17 protein-coding OR7A17 olfactory receptor, family 7, subfamily A, member 17 O olfactory receptor 7A17|olfactory receptor OR19-20 20121230 -9606 26335 OR7A15P - OR19-1|OR19-134|OR19-146|OR7A16P|OR7A20P|OR7A4P HGNC:8361 19 19p13.1 olfactory receptor, family 7, subfamily A, member 15 pseudogene pseudo OR7A15P olfactory receptor, family 7, subfamily A, member 15 pseudogene O - 20121230 -9606 26338 OR5L2 - HSHTPCRX16|HTPCRX16|OR11-153 HGNC:8351|Ensembl:ENSG00000205030|HPRD:15046|Vega:OTTHUMG00000166812 11 11q11 olfactory receptor, family 5, subfamily L, member 2 protein-coding OR5L2 olfactory receptor, family 5, subfamily L, member 2 O olfactory receptor 5L2|olfactory receptor OR11-153|olfactory receptor, family 5, subfamily L, member 1 20121230 -9606 26339 OR5K1 - HSHTPCRX10|HTPCRX10|OR3-8 HGNC:8349|Ensembl:ENSG00000232382|HPRD:15043|Vega:OTTHUMG00000160048 3 3q11.2 olfactory receptor, family 5, subfamily K, member 1 protein-coding OR5K1 olfactory receptor, family 5, subfamily K, member 1 O olfactory receptor 5K1|olfactory receptor OR3-8 20121230 -9606 26341 OR5H1 - HSHTPCRX14|HTPCRX14 HGNC:8346|Ensembl:ENSG00000231192|HPRD:17759|Vega:OTTHUMG00000160070 3 3q11.2 olfactory receptor, family 5, subfamily H, member 1 protein-coding OR5H1 olfactory receptor, family 5, subfamily H, member 1 O olfactory receptor 5H1 20121230 -9606 26343 OR5E1P - HSTPCR24|OR5E1|TPCR24 HGNC:8342 11 11p15.4 olfactory receptor, family 5, subfamily E, member 1 pseudogene pseudo OR5E1P olfactory receptor, family 5, subfamily E, member 1 pseudogene O - 20121230 -9606 26353 HSPB8 PP1629 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 HGNC:30171|MIM:608014|Ensembl:ENSG00000152137|HPRD:06420|Vega:OTTHUMG00000168932 12 12q24.23 heat shock 22kDa protein 8 protein-coding HSPB8 heat shock 22kDa protein 8 O E2-induced gene 1 protein|alpha-crystallin C chain|heat shock 27kDa protein 8|heat shock protein beta-8|protein kinase H11|small stress protein-like protein HSP22 20121230 -9606 26354 GNL3 - C77032|E2IG3|NNP47|NS HGNC:29931|MIM:608011|Ensembl:ENSG00000163938|HPRD:06419|Vega:OTTHUMG00000158752 3 3p21.1 guanine nucleotide binding protein-like 3 (nucleolar) protein-coding GNL3 guanine nucleotide binding protein-like 3 (nucleolar) O E2-induced gene 3 protein|estradiol-induced nucleotide binding protein|guanine nucleotide-binding protein-like 3|novel nucleolar protein 47|nucleolar GTP-binding protein 3|nucleostemin 20121230 -9606 26355 FAM162A DC16 C3orf28|E2IG5|HGTD-P HGNC:17865|MIM:608017|Ensembl:ENSG00000114023|HPRD:06422|Vega:OTTHUMG00000159494 3 3q21.1 family with sequence similarity 162, member A protein-coding FAM162A family with sequence similarity 162, member A O E2-induced gene 5 protein|HIF-1 alpha-responsive proapoptotic molecule|growth and transformation-dependent protein|protein FAM162A 20121230 -9606 26468 LHX6 RP11-498E2.6 LHX6.1 HGNC:21735|MIM:608215|Ensembl:ENSG00000106852|HPRD:10498|Vega:OTTHUMG00000020601 9 9q33.2 LIM homeobox 6 protein-coding LHX6 LIM homeobox 6 O LIM homeodomain protein 6.1|LIM/homeobox protein Lhx6|LIM/homeobox protein Lhx6.1 20121230 -9606 26469 PTPN18 - BDP1|PTP-HSCF HGNC:9649|MIM:606587|Ensembl:ENSG00000072135|HPRD:05961|Vega:OTTHUMG00000131630 2 2q21.1 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein-coding PTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) O brain-derived phosphatase|tyrosine-protein phosphatase non-receptor type 18 20121230 -9606 26470 SEZ6L2 UNQ1903/PRO4349 PSK-1 HGNC:30844|Ensembl:ENSG00000174938|HPRD:06686|Vega:OTTHUMG00000132112 16 16p11.2 seizure related 6 homolog (mouse)-like 2 protein-coding SEZ6L2 seizure related 6 homolog (mouse)-like 2 O seizure 6-like protein 2|type I transmembrane receptor (seizure-related protein) 20121230 -9606 26471 NUPR1 - COM1|P8 HGNC:29990|MIM:614812|Ensembl:ENSG00000176046|HPRD:17814|Vega:OTTHUMG00000131764 16 16p11.2 nuclear protein, transcriptional regulator, 1 protein-coding NUPR1 nuclear protein, transcriptional regulator, 1 O candidate of metastasis 1|nuclear protein 1|protein p8 20121230 -9606 26472 PPP1R14B - PHI-1|PLCB3N|PNG|SOM172 HGNC:9057|MIM:601140|Ensembl:ENSG00000173457|HPRD:18513|Vega:OTTHUMG00000167846 11 11q13 protein phosphatase 1, regulatory (inhibitor) subunit 14B protein-coding PPP1R14B protein phosphatase 1, regulatory (inhibitor) subunit 14B O phospholipase C beta-3 neighboring gene protein|phospholipase C-beta-3 neighbouring gene protein|protein phosphatase 1 regulatory subunit 14B 20121230 -9606 26473 OR7E16P - OR19-133|OR19-9|OR7E17P|OR7E60P HGNC:8387 19 19p13.2 olfactory receptor, family 7, subfamily E, member 16 pseudogene pseudo OR7E16P olfactory receptor, family 7, subfamily E, member 16 pseudogene O - 20121230 -9606 26475 OR7E43P - OR4-116|OR7E124P|OST712 HGNC:8417 4 4p16.3 olfactory receptor, family 7, subfamily E, member 43 pseudogene pseudo OR7E43P olfactory receptor, family 7, subfamily E, member 43 pseudogene O - 20121230 -9606 26476 OR10J1 - HGMP07J|HSHGMP07J HGNC:8175|Ensembl:ENSG00000196184|HPRD:17671|Vega:OTTHUMG00000022737 1 1q23.2 olfactory receptor, family 10, subfamily J, member 1 protein-coding OR10J1 olfactory receptor, family 10, subfamily J, member 1 O olfactory receptor 10J1|olfactory receptor OR1-26|olfactory receptor-like protein HGMP07J 20121230 -9606 26478 OR7E53P - OR3-142|OR3-143|OR7E132P|OR7E78|OR7E78P HGNC:8428 3 3q21.2 olfactory receptor, family 7, subfamily E, member 53 pseudogene pseudo OR7E53P olfactory receptor, family 7, subfamily E, member 53 pseudogene O - 20121230 -9606 26479 OR7E62P - OR2-4|OR2-52|OR2-53|OR2-75|OR7E62|OR7E63|OR7E63P|OR7E64|OR7E64P|OR7E82P HGNC:8438 2 2p13.3 olfactory receptor, family 7, subfamily E, member 62 pseudogene pseudo OR7E62P olfactory receptor, family 7, subfamily E, member 62 pseudogene O - 20121230 -9606 26492 OR8G2 - HSTPCR120|OR8G2P|OR8G4|ORL206|ORL486|TPCR120 HGNC:8485|HPRD:17789 11 11q24.2 olfactory receptor, family 8, subfamily G, member 2 protein-coding OR8G2 olfactory receptor, family 8, subfamily G, member 2 O olfactory receptor 8G2|olfactory receptor 8G4|olfactory receptor OR11-292|olfactory receptor OR11-297|olfactory receptor TPCR120|olfactory receptor, family 8, subfamily G, member 2 pseudogene|olfactory receptor, family 8, subfamily G, member 4|seven transmembrane helix receptor 20121230 -9606 26493 OR8B8 - TPCR85 HGNC:8477|Ensembl:ENSG00000197125|Vega:OTTHUMG00000165917 11 11q24.2 olfactory receptor, family 8, subfamily B, member 8 protein-coding OR8B8 olfactory receptor, family 8, subfamily B, member 8 O olfactory receptor 8B8|olfactory receptor OR11-316|olfactory receptor TPCR85|olfactory-like receptor JCG8 20121230 -9606 26494 OR8G1 - HSTPCR25|OR8G1P|TPCR25 HGNC:8484|HPRD:15082 11 11q24.2 olfactory receptor, family 8, subfamily G, member 1 protein-coding OR8G1 olfactory receptor, family 8, subfamily G, member 1 O olfactory receptor 8G1|olfactory receptor OR11-281|olfactory receptor TPCR25|olfactory receptor, family 8, subfamily G, member 1 pseudogene 20121230 -9606 26495 OR9A1P - HSHTPCRX06|HTPCRX06|OR9A1|OR9A5P HGNC:8486 7 7q34 olfactory receptor, family 9, subfamily A, member 1 pseudogene pseudo OR9A1P olfactory receptor, family 9, subfamily A, member 1 pseudogene O - 20121230 -9606 26496 OR10A3 - HSHTPCRX12|HTPCRX12 HGNC:8162|Ensembl:ENSG00000170683|HPRD:14881|Vega:OTTHUMG00000165672 11 11p15.4 olfactory receptor, family 10, subfamily A, member 3 protein-coding OR10A3 olfactory receptor, family 10, subfamily A, member 3 O olfactory receptor 10A3|olfactory receptor OR11-97 20121230 -9606 26497 OR10D3 - HTPCRX09|OR10D3P HGNC:8168 11 11q24.2 olfactory receptor, family 10, subfamily D, member 3 (non-functional) pseudo OR10D3 olfactory receptor, family 10, subfamily D, member 3 (non-functional) O - 20121230 -9606 26499 PLEK2 - - HGNC:19238|MIM:608007|Ensembl:ENSG00000100558|HPRD:12151|Vega:OTTHUMG00000171247 14 14q23.3 pleckstrin 2 protein-coding PLEK2 pleckstrin 2 O pleckstrin 2 homolog|pleckstrin-2 20121230 -9606 26502 NARF - IOP2 HGNC:29916|MIM:605349|Ensembl:ENSG00000141562|HPRD:05637|Vega:OTTHUMG00000178844 17 17q25.3 nuclear prelamin A recognition factor protein-coding NARF nuclear prelamin A recognition factor O iron-only hydrogenase-like protein 2|prenyl-dependent prelamin A binding protein 20121230 -9606 26503 SLC17A5 - AST|ISSD|NSD|SD|SIALIN|SIASD|SLD HGNC:10933|MIM:604322|Ensembl:ENSG00000119899|HPRD:05058|Vega:OTTHUMG00000015039 6 6q13 solute carrier family 17 (anion/sugar transporter), member 5 protein-coding SLC17A5 solute carrier family 17 (anion/sugar transporter), member 5 O membrane glycoprotein HP59|sialic acid storage disease|sialin|sodium/sialic acid cotransporter|solute carrier family 17 member 5|solute carrier family 17, member 5 20121230 -9606 26504 CNNM4 - ACDP4 HGNC:105|MIM:607805|Ensembl:ENSG00000158158|HPRD:07420|Vega:OTTHUMG00000130532 2 2q11 cyclin M4 protein-coding CNNM4 cyclin M4 O ancient conserved domain protein 4|ancient conserved domain-containing protein 4|cyclin-M4|metal transporter CNNM4 20121230 -9606 26505 CNNM3 - ACDP3 HGNC:104|MIM:607804|Ensembl:ENSG00000168763|HPRD:07419|Vega:OTTHUMG00000130531 2 2p12-p11.2 cyclin M3 protein-coding CNNM3 cyclin M3 O ancient conserved domain protein 3|ancient conserved domain-containing protein 3|cyclin-M3|metal transporter CNNM3 20121230 -9606 26507 CNNM1 - ACDP1|CLP-1 HGNC:102|MIM:607802|Ensembl:ENSG00000119946|HPRD:07417|Vega:OTTHUMG00000018881 10 10q24.2 cyclin M1 protein-coding CNNM1 cyclin M1 O ancient conserved domain protein 1|ancient conserved domain-containing protein 1|cyclin-M1|metal transporter CNNM1 20121230 -9606 26508 HEYL - HEY3|HRT3|bHLHb33 HGNC:4882|MIM:609034|Ensembl:ENSG00000163909|HPRD:16419|Vega:OTTHUMG00000000458 1 1p34.3 hairy/enhancer-of-split related with YRPW motif-like protein-coding HEYL hairy/enhancer-of-split related with YRPW motif-like O HEY-like protein|HRT-3|class B basic helix-loop-helix protein 33|hHRT3|hHeyL|hairy-related transcription factor 3|hairy/enhancer-of-split related with YRPW motif 3|hairy/enhancer-of-split related with YRPW motif-like protein 20121230 -9606 26509 MYOF RP11-624L12.2 FER1L3 HGNC:3656|MIM:604603|Ensembl:ENSG00000138119|HPRD:06857|Vega:OTTHUMG00000018772 10 10q24 myoferlin protein-coding MYOF myoferlin O fer-1-like 3, myoferlin|fer-1-like protein 3 20121230 -9606 26511 CHIC2 - BTL HGNC:1935|MIM:604332|Ensembl:ENSG00000109220|HPRD:10373|Vega:OTTHUMG00000102101 4 4q11 cysteine-rich hydrophobic domain 2 protein-coding CHIC2 cysteine-rich hydrophobic domain 2 O BRX-like translocated in leukemia|cystein-rich hydrophobic domain 2|cysteine-rich hydrophobic domain 2 protein 20121230 -9606 26512 INTS6 RP11-24B19.2 DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2 HGNC:14879|MIM:604331|Ensembl:ENSG00000102786|HPRD:05063|Vega:OTTHUMG00000016945 13 13q14.3 integrator complex subunit 6 protein-coding INTS6 integrator complex subunit 6 O DEAD box protein|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26|RNA helicase HDB|protein deleted in cancer 1 20121230 -9606 26513 RPL34P2 - RPL34_11_1133 HGNC:10342 11 11p13 ribosomal protein L34 pseudogene 2 pseudo RPL34P2 ribosomal protein L34 pseudogene 2 O - 20121230 -9606 26514 RPL34P1 - RPL34_3_118|dJ69E11.2 HGNC:10341 1 1q23-q24 ribosomal protein L34 pseudogene 1 pseudo RPL34P1 ribosomal protein L34 pseudogene 1 O - 20121230 -9606 26515 TIMM10B - FXC1|TIM10B|Tim9b HGNC:4022|MIM:607388|Ensembl:ENSG00000132286|HPRD:16242|Vega:OTTHUMG00000179826 11 11p15.4 translocase of inner mitochondrial membrane 10 homolog B (yeast) protein-coding TIMM10B translocase of inner mitochondrial membrane 10 homolog B (yeast) O fracture callus 1 homolog|fracture callus protein 1|mitochondrial import inner membrane translocase subunit Tim9 B 20121230 -9606 26516 RPS5P1 - RPS5_1_743 HGNC:10428 6 6q22.1 ribosomal protein S5 pseudogene 1 pseudo RPS5P1 ribosomal protein S5 pseudogene 1 O - 20121230 -9606 26517 TIMM13 - TIM13|TIM13B|TIMM13A|TIMM13B|ppv1 HGNC:11816|MIM:607383|Ensembl:ENSG00000099800|HPRD:09573|Vega:OTTHUMG00000180432 19 19p13.3 translocase of inner mitochondrial membrane 13 homolog (yeast) protein-coding TIMM13 translocase of inner mitochondrial membrane 13 homolog (yeast) O mitochondrial import inner membrane translocase subunit Tim13|mitochondrial import inner membrane translocase subunit Tim13B 20121230 -9606 26519 TIMM10 - TIM10|TIM10A HGNC:11814|MIM:602251|Ensembl:ENSG00000134809|HPRD:03768|Vega:OTTHUMG00000167039 11 11q12.1-q12.3 translocase of inner mitochondrial membrane 10 homolog (yeast) protein-coding TIMM10 translocase of inner mitochondrial membrane 10 homolog (yeast) O mitochondrial import inner membrane translocase subunit Tim10 20121230 -9606 26520 TIMM9 - TIM9|TIM9A HGNC:11819|MIM:607384|Ensembl:ENSG00000100575|HPRD:09574|Vega:OTTHUMG00000140322 14 14q21 translocase of inner mitochondrial membrane 9 homolog (yeast) protein-coding TIMM9 translocase of inner mitochondrial membrane 9 homolog (yeast) O mitochondrial import inner membrane translocase subunit Tim9 20121230 -9606 26521 TIMM8B - DDP2|TIM8B HGNC:11818|MIM:606659|Ensembl:ENSG00000150779|HPRD:16228|Vega:OTTHUMG00000162261 11 11q23.1-q23.2 translocase of inner mitochondrial membrane 8 homolog B (yeast) protein-coding TIMM8B translocase of inner mitochondrial membrane 8 homolog B (yeast) O DDP-like protein|deafness dystonia protein 2|mitochondrial import inner membrane translocase subunit Tim8 B 20121230 -9606 26523 EIF2C1 RP4-789D17.1 AGO1|EIF2C|GERP95|Q99 HGNC:3262|MIM:606228|Ensembl:ENSG00000092847|HPRD:06942|Vega:OTTHUMG00000007381 1 1p34.3 eukaryotic translation initiation factor 2C, 1 protein-coding EIF2C1 eukaryotic translation initiation factor 2C, 1 O Golgi Endoplasmic Reticulum protein 95 kDa|argonaute 1|argonaute1|eIF-2C 1|eIF2C 1|hAgo1|protein argonaute-1|putative RNA-binding protein Q99 20121230 -9606 26524 LATS2 - KPM HGNC:6515|MIM:604861|Ensembl:ENSG00000150457|HPRD:07277|Vega:OTTHUMG00000016531 13 13q11-q12 LATS, large tumor suppressor, homolog 2 (Drosophila) protein-coding LATS2 LATS, large tumor suppressor, homolog 2 (Drosophila) O LATS (large tumor suppressor, Drosophila) homolog 2|kinase phosphorylated during mitosis protein|large tumor suppressor homolog 2|serine/threonine kinase KPM|serine/threonine-protein kinase LATS2|serine/threonine-protein kinase kpm|warts-like kinase 20121230 -9606 26525 IL36RN UNQ1896/PRO4342 FIL1|FIL1(DELTA)|FIL1D|IL1F5|IL1HY1|IL1L1|IL1RP3|IL36RA|PSORP HGNC:15561|MIM:605507|Ensembl:ENSG00000136695|HPRD:16112|Vega:OTTHUMG00000131337 2 2q14 interleukin 36 receptor antagonist protein-coding IL36RN interleukin 36 receptor antagonist O IL-1 related protein 3|IL-1F5 (IL-1HY1, FIL1-delta, IL-1RP3, IL-1L1, IL-1-delta)|IL-1ra homolog 1|IL1F5 (Canonical product IL-1F5a)|family of interleukin 1-delta|interleukin 1 family, member 5 (delta)|interleukin-1 HY1|interleukin-1 receptor antagonist homolog 1|interleukin-1-like protein 1|interleukin-36 receptor antagonist protein 20121230 -9606 26526 TSPAN16 - TM-8|TM4-B|TM4SF16 HGNC:30725|Ensembl:ENSG00000130167|HPRD:18197|Vega:OTTHUMG00000180833 19 19p13.2 tetraspanin 16 protein-coding TSPAN16 tetraspanin 16 O tetraspanin TM4-B|tetraspanin-16|transmembrane 4 superfamily member 16|tspan-16 20121230 -9606 26528 DAZAP1 - - HGNC:2683|MIM:607430|Ensembl:ENSG00000071626|HPRD:08462|Vega:OTTHUMG00000180058 19 19p13.3 DAZ associated protein 1 protein-coding DAZAP1 DAZ associated protein 1 O DAZ-associated protein 1|deleted in azoospermia-associated protein 1 20121230 -9606 26529 OR12D2 - DJ994E9.8|HS6M1-20 HGNC:8178|Ensembl:ENSG00000168787|HPRD:17678|Vega:OTTHUMG00000031049 6 6p22.2-p21.31 olfactory receptor, family 12, subfamily D, member 2 protein-coding OR12D2 olfactory receptor, family 12, subfamily D, member 2 O olfactory receptor 12D2|olfactory receptor OR6-28 20121230 -9606 26530 OR12D1P - OR12D1|hs6M1-19 HGNC:8177 6 6p22.2-p21.31 olfactory receptor, family 12, subfamily D, member 1 pseudogene pseudo OR12D1P olfactory receptor, family 12, subfamily D, member 1 pseudogene O - 20121230 -9606 26531 OR11A1 DAAP-34I1.2 OR11A2|dJ994E9.6|hs6M1-18 HGNC:8176|Ensembl:ENSG00000204694|HPRD:14899|Vega:OTTHUMG00000031225 6 6p22.2-p21.31 olfactory receptor, family 11, subfamily A, member 1 protein-coding OR11A1 olfactory receptor, family 11, subfamily A, member 1 O olfactory receptor 11A1|olfactory receptor 11A2|olfactory receptor OR6-30|olfactory receptor, family 11, subfamily A, member 2 20121230 -9606 26532 OR10H3 - - HGNC:8174|Ensembl:ENSG00000171936|HPRD:17669|Vega:OTTHUMG00000182390 19 19p13.1 olfactory receptor, family 10, subfamily H, member 3 protein-coding OR10H3 olfactory receptor, family 10, subfamily H, member 3 O olfactory receptor 10H3|olfactory receptor OR19-24 20121230 -9606 26533 OR10G3 - OR14-40 HGNC:8171|Ensembl:ENSG00000169208|HPRD:14888|Vega:OTTHUMG00000168886 14 14q11.2 olfactory receptor, family 10, subfamily G, member 3 protein-coding OR10G3 olfactory receptor, family 10, subfamily G, member 3 O olfactory receptor 10G3|olfactory receptor OR14-40 20121230 -9606 26534 OR10G2 - OR14-41 HGNC:8170|Ensembl:ENSG00000255582|HPRD:14887|Vega:OTTHUMG00000168890 14 14q11.2 olfactory receptor, family 10, subfamily G, member 2 protein-coding OR10G2 olfactory receptor, family 10, subfamily G, member 2 O olfactory receptor 10G2|olfactory receptor OR14-41 pseudogene 20121230 -9606 26537 OR51A1P - HPFH6OR HGNC:8316 11 11p15.4 olfactory receptor, family 51, subfamily A, member 1 pseudogene pseudo OR51A1P olfactory receptor, family 51, subfamily A, member 1 pseudogene O - 20121230 -9606 26538 OR10H2 - - HGNC:8173|Ensembl:ENSG00000171942|HPRD:17668|Vega:OTTHUMG00000182389 19 19p13.1 olfactory receptor, family 10, subfamily H, member 2 protein-coding OR10H2 olfactory receptor, family 10, subfamily H, member 2 O olfactory receptor 10H2|olfactory receptor OR19-23 20121230 -9606 26539 OR10H1 - - HGNC:8172|Ensembl:ENSG00000186723|HPRD:17667|Vega:OTTHUMG00000182285 19 19p13.1 olfactory receptor, family 10, subfamily H, member 1 protein-coding OR10H1 olfactory receptor, family 10, subfamily H, member 1 O olfactory receptor 10H1|olfactory receptor OR19-27 20121230 -9606 26540 OR10G1P - - HGNC:8169 14 14q11.2 olfactory receptor, family 10, subfamily G, member 1 pseudogene pseudo OR10G1P olfactory receptor, family 10, subfamily G, member 1 pseudogene O - 20121230 -9606 26541 OR10D1P - HTPCRX03|OR10D2P|OST074 HGNC:8166 11 11q24.2 olfactory receptor, family 10, subfamily D, member 1 pseudogene pseudo OR10D1P olfactory receptor, family 10, subfamily D, member 1 pseudogene O - 20121230 -9606 26548 ITGB1BP2 MSTP015 CHORDC3|ITGB1BP|MELUSIN HGNC:6154|MIM:300332|Ensembl:ENSG00000147166|HPRD:02271|Vega:OTTHUMG00000021793 X Xq12-q13.1 integrin beta 1 binding protein (melusin) 2 protein-coding ITGB1BP2 integrin beta 1 binding protein (melusin) 2 O integrin beta-1-binding protein 2 20121230 -9606 26574 AATF HSPC277 CHE-1|CHE1|DED HGNC:19235|MIM:608463|Ensembl:ENSG00000108270|HPRD:12236|Vega:OTTHUMG00000179145 17 17q12 apoptosis antagonizing transcription factor protein-coding AATF apoptosis antagonizing transcription factor O apoptosis-antagonizing transcription factor|protein AATF|rb-binding protein Che-1 20121230 -9606 26575 RGS17 - RGS-17|RGSZ2|hRGS17 HGNC:14088|MIM:607191|Ensembl:ENSG00000091844|HPRD:06223|Vega:OTTHUMG00000015858 6 6q25.3 regulator of G-protein signaling 17 protein-coding RGS17 regulator of G-protein signaling 17 O - 20121230 -9606 26576 SRPK3 - MSSK-1|MSSK1|STK23 HGNC:11402|Ensembl:ENSG00000184343|HPRD:06731|Vega:OTTHUMG00000024207 X Xq28 SRSF protein kinase 3 protein-coding SRPK3 SRSF protein kinase 3 O SFRS protein kinase 3|SR-protein-specific kinase 3|muscle-specific serine kinase 1|serine arginine rich protein-specific kinase 3|serine/arginine-rich protein-specific kinase 3|serine/threonine kinase 23|serine/threonine-protein kinase 23|serine/threonine-protein kinase SRPK3 20121230 -9606 26577 PCOLCE2 UNQ250/PRO287 PCPE2 HGNC:8739|MIM:607064|Ensembl:ENSG00000163710|HPRD:06139|Vega:OTTHUMG00000159312 3 3q21-q24 procollagen C-endopeptidase enhancer 2 protein-coding PCOLCE2 procollagen C-endopeptidase enhancer 2 O procollagen C-proteinase enhancer 2|procollagen COOH-terminal proteinase enhancer 2 20121230 -9606 26578 OSTF1 - OSF|SH3P2|bA235O14.1 HGNC:8510|MIM:610180|Ensembl:ENSG00000134996|HPRD:17808|Vega:OTTHUMG00000020033 9 9q13-q21.2 osteoclast stimulating factor 1 protein-coding OSTF1 osteoclast stimulating factor 1 O osteoclast-stimulating factor 1 20121230 -9606 26579 MYEOV - OCIM HGNC:7563|MIM:605625|Ensembl:ENSG00000172927|HPRD:16130|Vega:OTTHUMG00000167836 11 11q13 myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas) protein-coding MYEOV myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas) O myeloma overexpressed gene (in a subset of t(11;14) positive multiple myelomas)|myeloma-overexpressed gene protein|oncogene in multiple myeloma 20121230 -9606 26580 BSCL2 - GNG3LG|HMN5|SPG17 HGNC:15832|MIM:606158|Ensembl:ENSG00000168000|HPRD:05858|Vega:OTTHUMG00000150624 11 11q13 Berardinelli-Seip congenital lipodystrophy 2 (seipin) protein-coding BSCL2 Berardinelli-Seip congenital lipodystrophy 2 (seipin) O Bernardinelli-Seip congenital lipodystrophy type 2 protein|seipin 20121230 -9606 26581 DUX5 - DUX1 HGNC:3083|MIM:611444|HPRD:18587 Un - double homeobox 5 protein-coding DUX5 double homeobox 5 O double homeobox protein 1|double homeobox protein 5|double homeobox, 5 20121230 -9606 26582 DUX3 - - HGNC:3081|MIM:611443|HPRD:18588 - - double homeobox 3 protein-coding DUX3 double homeobox 3 O double homeobox, 3|putative double homeobox protein 3 20120610 -9606 26583 DUX2 - - HGNC:3080|MIM:611442|HPRD:18589 4 4q35.2 double homeobox 2 protein-coding DUX2 double homeobox 2 O double homeobox protein 2|double homeobox, 2|putative double homeobox protein 2 20121209 -9606 26584 DUX1 - - HGNC:3079|MIM:611441|HPRD:10609 10 - double homeobox 1 protein-coding DUX1 double homeobox 1 O double homeobox protein 1|double homeobox, 1 20121230 -9606 26585 GREM1 PIG2 CKTSF1B1|DAND2|DRM|GREMLIN|IHG-2 HGNC:2001|MIM:603054|Ensembl:ENSG00000166923|HPRD:07048|Vega:OTTHUMG00000129319 15 15q13.3 gremlin 1 protein-coding GREM1 gremlin 1 O DAN domain family member 2|cell proliferation-inducing gene 2 protein|cysteine knot superfamily 1, BMP antagonist 1|down-regulated in Mos-transformed cells protein|gremlin 1, cysteine knot superfamily, homolog|gremlin 1-like protein|gremlin-1|increased in high glucose protein 2|increased in high glucose-2|proliferation-inducing gene 2 20121230 -9606 26586 CKAP2 - LB1|TMAP|se20-10 HGNC:1990|MIM:611569|Ensembl:ENSG00000136108|HPRD:10832|Vega:OTTHUMG00000016967 13 13q14 cytoskeleton associated protein 2 protein-coding CKAP2 cytoskeleton associated protein 2 O CTCL tumor antigen se20-10|cytoskeleton-associated protein 2|tumor- and microtubule-associated protein|tumor-associated microtubule-associated protein 20121230 -9606 26589 MRPL46 - C15orf4|LIECG2|P2ECSL HGNC:1192|MIM:611851|Ensembl:ENSG00000259494|HPRD:14765|Vega:OTTHUMG00000148683 15 15q25.3 mitochondrial ribosomal protein L46 protein-coding MRPL46 mitochondrial ribosomal protein L46 O 39S ribosomal protein L46, mitochondrial|L46mt|MRP-L46 20121230 -9606 26590 OR8B7P - OR8B13P HGNC:8476 11 11q25 olfactory receptor, family 8, subfamily B, member 7 pseudogene pseudo OR8B7P olfactory receptor, family 8, subfamily B, member 7 pseudogene O - 20121230 -9606 26591 OR8B6P - - HGNC:8475 11 11q25 olfactory receptor, family 8, subfamily B, member 6 pseudogene pseudo OR8B6P olfactory receptor, family 8, subfamily B, member 6 pseudogene O - 20121230 -9606 26592 OR8B5P - - HGNC:8474 11 11q25 olfactory receptor, family 8, subfamily B, member 5 pseudogene pseudo OR8B5P olfactory receptor, family 8, subfamily B, member 5 pseudogene O - 20121230 -9606 26595 OR8B2 - OR11-309|OR11-310 HGNC:8471|Ensembl:ENSG00000204293|HPRD:15078|Vega:OTTHUMG00000165982 11 11q24.1 olfactory receptor, family 8, subfamily B, member 2 protein-coding OR8B2 olfactory receptor, family 8, subfamily B, member 2 O olfactory receptor 8B2|olfactory receptor OR11-309|olfactory receptor OR11-310 20121230 -9606 26608 TBL2 UNQ563/PRO1125 WBSCR13|WS-betaTRP HGNC:11586|MIM:605842|Ensembl:ENSG00000106638|HPRD:09319|Vega:OTTHUMG00000023427 7 7q11.23 transducin (beta)-like 2 protein-coding TBL2 transducin (beta)-like 2 O WS beta-transducin repeats protein|Williams-Beuren syndrome chromosome region 13|transducin beta-like protein 2 20121230 -9606 26609 VCX - VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 HGNC:12667|MIM:300229|Ensembl:ENSG00000182583|HPRD:02206|Vega:OTTHUMG00000028608 X Xp22 variable charge, X-linked protein-coding VCX variable charge, X-linked O variable charge X-linked protein 1|variable charge protein on X with ten repeats|variable charge, X chromosome|variably charged protein X-B1 20121230 -9606 26610 ELP4 - C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1 HGNC:1171|MIM:606985|Ensembl:ENSG00000109911|HPRD:07377|Vega:OTTHUMG00000142919 11 11p13 elongator acetyltransferase complex subunit 4 protein-coding ELP4 elongator acetyltransferase complex subunit 4 O PAX6 neighbor gene protein|elongation protein 4 homolog|elongator complex protein 4|hELP4 20121230 -9606 26614 OR7E66P - OR3.3|OR3DG|OR7E20P|OR7E6P|hg630 HGNC:8442 3 3p13 olfactory receptor, family 7, subfamily E, member 66 pseudogene pseudo OR7E66P olfactory receptor, family 7, subfamily E, member 66 pseudogene O - 20121230 -9606 26628 OR7E47P - OR7E141 HGNC:8421 12 12q13.13 olfactory receptor, family 7, subfamily E, member 47 pseudogene pseudo OR7E47P olfactory receptor, family 7, subfamily E, member 47 pseudogene O - 20121230 -9606 26637 OR7E36P - OR7E119P|OST024 HGNC:8409 13 13q14 olfactory receptor, family 7, subfamily E, member 36 pseudogene pseudo OR7E36P olfactory receptor, family 7, subfamily E, member 36 pseudogene O - 20121230 -9606 26640 OR7E33P - hg688 HGNC:8406 13 13q21.32 olfactory receptor, family 7, subfamily E, member 33 pseudogene pseudo OR7E33P olfactory receptor, family 7, subfamily E, member 33 pseudogene O - 20121230 -9606 26644 OR7E29P - OR7E30P|OST032|OST339 HGNC:8401 3 3q21.2 olfactory receptor, family 7, subfamily E, member 29 pseudogene pseudo OR7E29P olfactory receptor, family 7, subfamily E, member 29 pseudogene O - 20121230 -9606 26645 OR7E28P - OR7E107P|OR7E133P|OR7E27P|OST128|hg616 HGNC:8400 2 2q24.1 olfactory receptor, family 7, subfamily E, member 28 pseudogene pseudo OR7E28P olfactory receptor, family 7, subfamily E, member 28 pseudogene O - 20121230 -9606 26647 OR7E25P - CIT-B-440L2|OR19-12|OR19-C HGNC:8397 19 19p13.2 olfactory receptor, family 7, subfamily E, member 25 pseudogene pseudo OR7E25P olfactory receptor, family 7, subfamily E, member 25 pseudogene O - 20121230 -9606 26648 OR7E24 - HSHT2|OR19-8|OR7E24P|OR7E24Q HGNC:8396|Ensembl:ENSG00000237521|Vega:OTTHUMG00000179938 19 19p13.2 olfactory receptor, family 7, subfamily E, member 24 protein-coding OR7E24 olfactory receptor, family 7, subfamily E, member 24 O olfactory receptor 7E24|olfactory receptor OR19-14 20121230 -9606 26651 OR7E19P - HSCIT-B-440L2|OR19-7|OR7E65|TPCR11|tpcr110 HGNC:8390 19 19p13.2 olfactory receptor, family 7, subfamily E, member 19 pseudogene pseudo OR7E19P olfactory receptor, family 7, subfamily E, member 19 pseudogene O - 20121230 -9606 26656 OR7D1P - OR19-131|OR19-A|OR7D3|OR7D3P HGNC:8377 19 19p13.2 olfactory receptor, family 7, subfamily D, member 1 pseudogene pseudo OR7D1P olfactory receptor, family 7, subfamily D, member 1 pseudogene O - 20121230 -9606 26658 OR7C2 - CIT-HSP-87M17|OR19-18|OR7C3 HGNC:8374|Ensembl:ENSG00000127529|HPRD:15072 19 19p13.1 olfactory receptor, family 7, subfamily C, member 2 protein-coding OR7C2 olfactory receptor, family 7, subfamily C, member 2 O olfactory receptor 19-18|olfactory receptor 7C2|olfactory receptor 7C3|olfactory receptor OR19-22|olfactory receptor, family 7, subfamily C, member 3 20121230 -9606 26659 OR7A5 - HTPCR2 HGNC:8368|HPRD:17782 19 19p13.1 olfactory receptor, family 7, subfamily A, member 5 protein-coding OR7A5 olfactory receptor, family 7, subfamily A, member 5 O olfactory receptor 7A5|olfactory receptor OR19-17|olfactory receptor TPCR92|olfactory receptor, family 7, subfamily A, member 5 pseudogene 20121230 -9606 26661 OR7A8P - HG83|OR19-11|OR7A9P|OST042 HGNC:8371 19 19p13.1 olfactory receptor, family 7, subfamily A, member 8 pseudogene pseudo OR7A8P olfactory receptor, family 7, subfamily A, member 8 pseudogene O - 20121230 -9606 26664 OR7C1 - CIT-HSP-146E8|HSTPCR86P|OR19-5|OR7C4|TPCR86 HGNC:8373|Ensembl:ENSG00000127530|HPRD:17783 19 19p13.1 olfactory receptor, family 7, subfamily C, member 1 protein-coding OR7C1 olfactory receptor, family 7, subfamily C, member 1 O olfactory receptor 7C1|olfactory receptor 7C4|olfactory receptor OR19-16|olfactory receptor TPCR86|olfactory receptor, family 7, subfamily C, member 4 20121230 -9606 26668 OR7A3P - OR11-7b|OR14-11|OR14-59|OR19-12|OR7A12P|OR7A13P|OR7A14|OR7A14P HGNC:8366 19 19p13.12 olfactory receptor, family 7, subfamily A, member 3 pseudogene pseudo OR7A3P olfactory receptor, family 7, subfamily A, member 3 pseudogene O - 20121230 -9606 26669 OR7A11P - OR7A11|OST527 HGNC:8357 19 19p13.1 olfactory receptor, family 7, subfamily A, member 11 pseudogene pseudo OR7A11P olfactory receptor, family 7, subfamily A, member 11 pseudogene O - 20121230 -9606 26679 OR4G3P - OLC|OLC-7501|OR4G3|OR4G5P HGNC:8304 19 19p13.3 olfactory receptor, family 4, subfamily G, member 3 pseudogene pseudo OR4G3P olfactory receptor, family 4, subfamily G, member 3 pseudogene O - 20121230 -9606 26680 OR4G2P - OR4G7P HGNC:8303 15 15q26 olfactory receptor, family 4, subfamily G, member 2 pseudogene pseudo OR4G2P olfactory receptor, family 4, subfamily G, member 2 pseudogene O - 20121230 -9606 26681 OR4G1P - OLB|OR4G8P HGNC:8302 19 19p13.3 olfactory receptor, family 4, subfamily G, member 1 pseudogene pseudo OR4G1P olfactory receptor, family 4, subfamily G, member 1 pseudogene O - 20121230 -9606 26682 OR4F4 - OLA-7501|OR4F18 HGNC:8301|Ensembl:ENSG00000177693|HPRD:14973|Vega:OTTHUMG00000172272 15 15q26.3 olfactory receptor, family 4, subfamily F, member 4 protein-coding OR4F4 olfactory receptor, family 4, subfamily F, member 4 O HS14a-1-A|OR4F17|olfactory receptor 4F4|olfactory receptor OR19-3|olfactory receptor, family 4, subfamily F, member 18 20121230 -9606 26683 OR4F3 - - HGNC:8300|Ensembl:ENSG00000230178|HPRD:14972|Vega:OTTHUMG00000162081 5 5q35.3 olfactory receptor, family 4, subfamily F, member 3 protein-coding OR4F3 olfactory receptor, family 4, subfamily F, member 3 O olfactory receptor 4F3/4F16/4F29|olfactory receptor OR1-1|olfactory receptor OR7-21 20121230 -9606 26685 OR4F1P - HSDJ0609N19|OR4F1 HGNC:8298 6 6p25.3 olfactory receptor, family 4, subfamily F, member 1 pseudogene pseudo OR4F1P olfactory receptor, family 4, subfamily F, member 1 pseudogene O - 20121230 -9606 26686 OR4E2 - OR14-42 HGNC:8297|Ensembl:ENSG00000221977|HPRD:11414|Vega:OTTHUMG00000168979 14 14q11.2 olfactory receptor, family 4, subfamily E, member 2 protein-coding OR4E2 olfactory receptor, family 4, subfamily E, member 2 O olfactory receptor 4E2|olfactory receptor OR14-42 20121230 -9606 26687 OR4E1 - OR4E1P HGNC:8296 14 14q11.2 olfactory receptor, family 4, subfamily E, member 1 (gene/pseudogene) pseudo OR4E1 olfactory receptor, family 4, subfamily E, member 1 (gene/pseudogene) O - 20121230 -9606 26689 OR4D1 - OR17-23|OR4D3|OR4D4P|TPCR16 HGNC:8293|Ensembl:ENSG00000141194|HPRD:14965|Vega:OTTHUMG00000178799 17 17q23.2 olfactory receptor, family 4, subfamily D, member 1 protein-coding OR4D1 olfactory receptor, family 4, subfamily D, member 1 O olfactory receptor 4D1|olfactory receptor 4D3|olfactory receptor OR17-23 pseudogene|olfactory receptor TPCR16|olfactory receptor, family 4, subfamily D, member 3|olfactory receptor, family 4, subfamily D, member 4 pseudogene|seven transmembrane helix receptor 20121230 -9606 26690 OR4B2P - hg449 HGNC:8291 11 11p11.2 olfactory receptor, family 4, subfamily B, member 2 pseudogene pseudo OR4B2P olfactory receptor, family 4, subfamily B, member 2 pseudogene O - 20121230 -9606 26692 OR2W1 DAAP-223O5.3 hs6M1-15 HGNC:8281|Ensembl:ENSG00000204704|HPRD:17713|Vega:OTTHUMG00000031048 6 6p22.1 olfactory receptor, family 2, subfamily W, member 1 protein-coding OR2W1 olfactory receptor, family 2, subfamily W, member 1 O olfactory receptor 2W1|olfactory receptor OR6-13 20121230 -9606 26693 OR2V1 - OR2V1P|OST265 HGNC:8280|Ensembl:ENSG00000185372|Vega:OTTHUMG00000162118 5 5q35.3 olfactory receptor, family 2, subfamily V, member 1 protein-coding OR2V1 olfactory receptor, family 2, subfamily V, member 1 O olfactory receptor 2V1|olfactory receptor, family 2, subfamily V, member 1 pseudogene 20121230 -9606 26694 OR2U2P - OR6-24|hs6M1-23 HGNC:8279 6 6p22.2-p21.32 olfactory receptor, family 2, subfamily U, member 2 pseudogene pseudo OR2U2P olfactory receptor, family 2, subfamily U, member 2 pseudogene O - 20121230 -9606 26695 OR2U1P - OR2AU1P|hs6M1-24 HGNC:8278 6 6p22.2-p21.32 olfactory receptor, family 2, subfamily U, member 1 pseudogene pseudo OR2U1P olfactory receptor, family 2, subfamily U, member 1 pseudogene O - 20121230 -9606 26696 OR2T1 - OR1-25 HGNC:8277|Ensembl:ENSG00000175143|HPRD:14949|Vega:OTTHUMG00000040450 1 1q44 olfactory receptor, family 2, subfamily T, member 1 protein-coding OR2T1 olfactory receptor, family 2, subfamily T, member 1 O olfactory receptor 1-25|olfactory receptor 2T1|olfactory receptor OR1-61 20121230 -9606 26701 OR2N1P - HS6M1-2|OLFR89|OR6-7 HGNC:8271 6 6p22.2-p21.31 olfactory receptor, family 2, subfamily N, member 1 pseudogene pseudo OR2N1P olfactory receptor, family 2, subfamily N, member 1 pseudogene O - 20121230 -9606 26707 OR2J2 DADB-150K7.5 OR6-19|OR6-8|OR6.3.8|ORL684|dJ80I19.4|hs6M1-6 HGNC:8260|Ensembl:ENSG00000204700|HPRD:17700|Vega:OTTHUMG00000031091 6 6p22.2-p21.31 olfactory receptor, family 2, subfamily J, member 2 protein-coding OR2J2 olfactory receptor, family 2, subfamily J, member 2 O olfactory receptor 2J2|olfactory receptor 6-8|olfactory receptor OR6-19 20121230 -9606 26713 OR2H5P - HS271M21|OLFR42B|OR2H5|OR2H7|OR6-33|OR6-35|hs6M1-13 HGNC:8256 6 6p21.3 olfactory receptor, family 2, subfamily H, member 5 pseudogene pseudo OR2H5P olfactory receptor, family 2, subfamily H, member 5 pseudogene O - 20121230 -9606 26716 OR2H1 DAAP-341G9.5 6M1-16|HS6M1-16|OLFR42A-9004-14|OR2H6|OR2H8|OR6-2|dJ994E9.4 HGNC:8252|Ensembl:ENSG00000204688|HPRD:17699|Vega:OTTHUMG00000031050 6 6p21.32 olfactory receptor, family 2, subfamily H, member 1 protein-coding OR2H1 olfactory receptor, family 2, subfamily H, member 1 O OLFR42A-9004.14/9026.2|olfactory receptor 2H1|olfactory receptor 2H6|olfactory receptor 2H8|olfactory receptor 6-2|olfactory receptor OR6-32|olfactory receptor, family 2, subfamily H, member 6|olfactory receptor, family 2, subfamily H, member 8 20121230 -9606 26717 OR2G1P - OR6-22|OST619|hs6M1-25 HGNC:8251 6 6p22.2-p21.32 olfactory receptor, family 2, subfamily G, member 1 pseudogene pseudo OR2G1P olfactory receptor, family 2, subfamily G, member 1 pseudogene O - 20121230 -9606 26719 OR2E1P - HS29K1|HSNH0569I24|OR2E1|OR2E2|hs6M1-9|hs6M1-9p HGNC:15507 6 6p22-p21.3 olfactory receptor, family 2, subfamily E, member 1 pseudogene pseudo OR2E1P olfactory receptor, family 2, subfamily E, member 1 pseudogene O - 20121230 -9606 26735 OR1L3 - OR9-28|OR9-D HGNC:8215|Ensembl:ENSG00000171481|HPRD:14921|Vega:OTTHUMG00000020619 9 9q33.2 olfactory receptor, family 1, subfamily L, member 3 protein-coding OR1L3 olfactory receptor, family 1, subfamily L, member 3 O olfactory receptor 1L3|olfactory receptor 9-D|olfactory receptor OR9-28 20121230 -9606 26737 OR1L1 - HG23|OR1L2|OR9-27|OR9-C HGNC:8213|Ensembl:ENSG00000173679|HPRD:14920|Vega:OTTHUMG00000020618 9 9q33.2 olfactory receptor, family 1, subfamily L, member 1 protein-coding OR1L1 olfactory receptor, family 1, subfamily L, member 1 O olfactory receptor 1L1|olfactory receptor 1L2|olfactory receptor 9-C|olfactory receptor OR9-27|olfactory receptor, family 1, subfamily L, member 2 20121230 -9606 26740 OR1J2 RP11-542K23.4 HG152|HSA5|OR1J3|OR1J5|OR9-19|OST044 HGNC:8209|Ensembl:ENSG00000197233|HPRD:14917|Vega:OTTHUMG00000020604 9 9q34.11 olfactory receptor, family 1, subfamily J, member 2 protein-coding OR1J2 olfactory receptor, family 1, subfamily J, member 2 O HTPCRX15|olfactory receptor 1J2|olfactory receptor 1J3|olfactory receptor 1J5|olfactory receptor OR9-19|olfactory receptor, family 1, subfamily J, member 3|olfactory receptor, family 1, subfamily J, member 5 20121230 -9606 26742 OR1H1P - OR1H1|OST26 HGNC:8206 9 9q33.2 olfactory receptor, family 1, subfamily H, member 1 pseudogene pseudo OR1H1P olfactory receptor, family 1, subfamily H, member 1 pseudogene O - 20121230 -9606 26747 NUFIP1 - NUFIP|bA540M5.1 HGNC:8057|MIM:604354|Ensembl:ENSG00000083635|HPRD:05073|Vega:OTTHUMG00000016842 13 13q14 nuclear fragile X mental retardation protein interacting protein 1 protein-coding NUFIP1 nuclear fragile X mental retardation protein interacting protein 1 O nuclear FMRP-interacting protein 1|nuclear fragile X mental retardation-interacting protein 1 20121230 -9606 26748 GAGE12I - AL4|CT4.7|GAGE-7B|GAGE7B HGNC:4105|MIM:300637|Ensembl:ENSG00000241465|HPRD:06573|Vega:OTTHUMG00000067390 X Xp11.23 G antigen 12I protein-coding GAGE12I G antigen 12I O G antigen 7B|cancer/testis antigen 4.7|g antigen 12F/G/I 20121209 -9606 26749 GAGE2E CTD-2248C21.1 GAGE-2E|GAGE8 HGNC:31960|MIM:300736|Ensembl:ENSG00000205775|HPRD:06574|Vega:OTTHUMG00000067394 X Xp11.23 G antigen 2E protein-coding GAGE2E G antigen 2E O - 20121230 -9606 26750 RPS6KC1 - RPK118|humS6PKh1 HGNC:10439|Ensembl:ENSG00000136643|HPRD:10204|Vega:OTTHUMG00000036926 1 1q41 ribosomal protein S6 kinase, 52kDa, polypeptide 1 protein-coding RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 O 52 kDa ribosomal protein S6 kinase|S6K-delta-1|SPHK1-binding protein|ribosomal S6 kinase-like protein with two PSK domains 118 kDa protein|ribosomal protein S6 kinase delta-1 20121230 -9606 26751 SH3YL1 - RAY HGNC:29546|Ensembl:ENSG00000035115|HPRD:15336|Vega:OTTHUMG00000151359 2 2p25.3 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) protein-coding SH3YL1 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) O SH3 domain-containing YSC84-like protein 1 20121230 -9606 26762 HAVCR1 - HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 HGNC:17866|MIM:606518|Ensembl:ENSG00000113249|HPRD:09404|Vega:OTTHUMG00000163466 5 5q33.2 hepatitis A virus cellular receptor 1 protein-coding HAVCR1 hepatitis A virus cellular receptor 1 O T cell immunoglobin domain and mucin domain protein 1|T-cell membrane protein 1|kidney injury molecule 1 20121230 -9606 26765 SNORD12C - E2|E2-1|E3|RNU106|SNORD106|U106 HGNC:10105 20 20q13.13 small nucleolar RNA, C/D box 12C snoRNA SNORD12C small nucleolar RNA, C/D box 12C O - 20121230 -9606 26766 RNU105C - E1-5|E1-6 HGNC:10104 8 8q11.23 RNA, U105C small nucleolar snoRNA RNU105C RNA, U105C small nucleolar O - 20121230 -9606 26767 RNU105B - 105B|E1-2 HGNC:10103 20 20p12.3 RNA, U105B small nucleolar snoRNA RNU105B RNA, U105B small nucleolar O - 20121230 -9606 26768 RNU105A - 105A|E1c HGNC:10102 1 1p35.3 RNA, U105A small nucleolar snoRNA RNU105A RNA, U105A small nucleolar O - 20121230 -9606 26769 SNORD81 - RNU104|U81|Z23 HGNC:10101 1 1q25.1 small nucleolar RNA, C/D box 81 snoRNA SNORD81 small nucleolar RNA, C/D box 81 O - 20121230 -9606 26770 SNORD79 - RNU103|U79|Z22 HGNC:10100 1 1q25.1 small nucleolar RNA, C/D box 79 snoRNA SNORD79 small nucleolar RNA, C/D box 79 O - 20121230 -9606 26771 SNORD102 - RNU102|Z18 HGNC:10099 13 13q12.2 small nucleolar RNA, C/D box 102 snoRNA SNORD102 small nucleolar RNA, C/D box 102 O - 20121230 -9606 26772 SNORD4B - RNU101B|Z17B HGNC:10098 17 17q11 small nucleolar RNA, C/D box 4B snoRNA SNORD4B small nucleolar RNA, C/D box 4B O - 20121230 -9606 26773 SNORD4A - RNU101A|Z17A|mgh18S-121 HGNC:10097 17 17q11 small nucleolar RNA, C/D box 4A snoRNA SNORD4A small nucleolar RNA, C/D box 4A O - 20121230 -9606 26774 SNORD80 - RNU100|U80|Z15 HGNC:10096 1 1q25.1 small nucleolar RNA, C/D box 80 snoRNA SNORD80 small nucleolar RNA, C/D box 80 O - 20121230 -9606 26775 SNORA72 - RNU72|U72 HGNC:10234 8 8q22 small nucleolar RNA, H/ACA box 72 snoRNA SNORA72 small nucleolar RNA, H/ACA box 72 O - 20121230 -9606 26776 SNORA71B - RNU71B|U71b HGNC:10233 20 20q11.23 small nucleolar RNA, H/ACA box 71B snoRNA SNORA71B small nucleolar RNA, H/ACA box 71B O - 20121230 -9606 26777 SNORA71A - RNU71A|U71a HGNC:10232 20 20q11.23 small nucleolar RNA, H/ACA box 71A snoRNA SNORA71A small nucleolar RNA, H/ACA box 71A O - 20121230 -9606 26778 SNORA70 - DXS648E|RNU70|U70 HGNC:10231 X Xq28 small nucleolar RNA, H/ACA box 70 snoRNA SNORA70 small nucleolar RNA, H/ACA box 70 O - 20121230 -9606 26779 SNORA69 - RNU69|U69|U69A HGNC:10226 X Xq24 small nucleolar RNA, H/ACA box 69 snoRNA SNORA69 small nucleolar RNA, H/ACA box 69 O - 20121230 -9606 26780 SNORA68 - RNU68|U68 HGNC:10225 19 19p13 small nucleolar RNA, H/ACA box 68 snoRNA SNORA68 small nucleolar RNA, H/ACA box 68 O - 20121230 -9606 26781 SNORA67 - RNU67|U67 HGNC:10224 17 17p13.1 small nucleolar RNA, H/ACA box 67 snoRNA SNORA67 small nucleolar RNA, H/ACA box 67 O - 20121230 -9606 26782 SNORA66 - RNU66|U66 HGNC:10223 1 1p22.1 small nucleolar RNA, H/ACA box 66 snoRNA SNORA66 small nucleolar RNA, H/ACA box 66 O - 20121230 -9606 26783 SNORA65 - RNU65|U65 HGNC:10222 9 9q34 small nucleolar RNA, H/ACA box 65 snoRNA SNORA65 small nucleolar RNA, H/ACA box 65 O - 20121230 -9606 26784 SNORA64 - RNU64|U64 HGNC:10221 16 16p13.3 small nucleolar RNA, H/ACA box 64 snoRNA SNORA64 small nucleolar RNA, H/ACA box 64 O - 20121230 -9606 26785 SNORD63 - RNU63|U63 HGNC:10220 5 5q31.2 small nucleolar RNA, C/D box 63 snoRNA SNORD63 small nucleolar RNA, C/D box 63 O - 20121230 -9606 26786 SNORD62A - RNU62|U62|U62A HGNC:10219 9 9q34.13 small nucleolar RNA, C/D box 62A snoRNA SNORD62A small nucleolar RNA, C/D box 62A O - 20121230 -9606 26787 SNORD61 - HBII-342|RNU61|U61 HGNC:10218 X Xq26.3 small nucleolar RNA, C/D box 61 snoRNA SNORD61 small nucleolar RNA, C/D box 61 O - 20121230 -9606 26788 SNORD60 - RNU60|U60 HGNC:10217 16 16p13.3 small nucleolar RNA, C/D box 60 snoRNA SNORD60 small nucleolar RNA, C/D box 60 O - 20121230 -9606 26789 SNORD59A - RNU59|U59 HGNC:10210 12 12p13.3 small nucleolar RNA, C/D box 59A snoRNA SNORD59A small nucleolar RNA, C/D box 59A O - 20121230 -9606 26790 SNORD58B - RNU58B|U58b HGNC:10209 18 18q21 small nucleolar RNA, C/D box 58B snoRNA SNORD58B small nucleolar RNA, C/D box 58B O - 20121230 -9606 26791 SNORD58A - RNU58A|U58a HGNC:10208 18 18q21 small nucleolar RNA, C/D box 58A snoRNA SNORD58A small nucleolar RNA, C/D box 58A O - 20121230 -9606 26792 SNORD57 - RNU57|U57 HGNC:10207 20 20p13 small nucleolar RNA, C/D box 57 snoRNA SNORD57 small nucleolar RNA, C/D box 57 O - 20121230 -9606 26793 SNORD56 - RNU56|U56 HGNC:10206 20 20p13 small nucleolar RNA, C/D box 56 snoRNA SNORD56 small nucleolar RNA, C/D box 56 O - 20121230 -9606 26795 SNORD54 - RNU54|U54 HGNC:10204 8 8q12 small nucleolar RNA, C/D box 54 snoRNA SNORD54 small nucleolar RNA, C/D box 54 O - 20121230 -9606 26796 SNORD53 - RNU53|U53 HGNC:10203 2 2p23.2 small nucleolar RNA, C/D box 53 snoRNA SNORD53 small nucleolar RNA, C/D box 53 O - 20121230 -9606 26797 SNORD52 - RNU52|U52 HGNC:10202 6 6p21.33 small nucleolar RNA, C/D box 52 snoRNA SNORD52 small nucleolar RNA, C/D box 52 O - 20121230 -9606 26798 SNORD51 - RNU51|U51 HGNC:10201 2 2q33 small nucleolar RNA, C/D box 51 snoRNA SNORD51 small nucleolar RNA, C/D box 51 O - 20121230 -9606 26799 SNORD50A - RNU50|U50 HGNC:10200|MIM:613117 6 6q14.3 small nucleolar RNA, C/D box 50A snoRNA SNORD50A small nucleolar RNA, C/D box 50A O - 20121230 -9606 26800 SNORD49A - RNU49|U49|U49A HGNC:10189 17 17p11.2 small nucleolar RNA, C/D box 49A snoRNA SNORD49A small nucleolar RNA, C/D box 49A O - 20121230 -9606 26801 SNORD48 - RNU48|U48 HGNC:10188 6 6p21.33 small nucleolar RNA, C/D box 48 snoRNA SNORD48 small nucleolar RNA, C/D box 48 O - 20121230 -9606 26802 SNORD47 - RNU47|U47 HGNC:10187 1 1q25.1 small nucleolar RNA, C/D box 47 snoRNA SNORD47 small nucleolar RNA, C/D box 47 O - 20121230 -9606 26804 SNORD45B - RNU45B|U45b HGNC:10185 1 1p31.1 small nucleolar RNA, C/D box 45B snoRNA SNORD45B small nucleolar RNA, C/D box 45B O - 20121230 -9606 26805 SNORD45A - RNU45A|U45a HGNC:10184 1 1p31.1 small nucleolar RNA, C/D box 45A snoRNA SNORD45A small nucleolar RNA, C/D box 45A O - 20121230 -9606 26806 SNORD44 - RNU44|U44 HGNC:10183 1 1q25.1 small nucleolar RNA, C/D box 44 snoRNA SNORD44 small nucleolar RNA, C/D box 44 O - 20121230 -9606 26807 SNORD43 - RNU43|U43 HGNC:10182|MIM:611068 22 22q13 small nucleolar RNA, C/D box 43 snoRNA SNORD43 small nucleolar RNA, C/D box 43 O - 20121230 -9606 26808 SNORD42B - RNU42B|U42B HGNC:10181 17 17q11 small nucleolar RNA, C/D box 42B snoRNA SNORD42B small nucleolar RNA, C/D box 42B O - 20121230 -9606 26809 SNORD42A - RNU42A|U42|U42A HGNC:10180 17 17q11 small nucleolar RNA, C/D box 42A snoRNA SNORD42A small nucleolar RNA, C/D box 42A O - 20121230 -9606 26810 SNORD41 - RNU41|U41 HGNC:10179 19 19p13.2 small nucleolar RNA, C/D box 41 snoRNA SNORD41 small nucleolar RNA, C/D box 41 O - 20121230 -9606 26811 SNORD55 - RNU39|RNU55|SNORD39|U39|U55 HGNC:10205 1 1p34.1 small nucleolar RNA, C/D box 55 snoRNA SNORD55 small nucleolar RNA, C/D box 55 O - 20121230 -9606 26812 SNORD37 - RNU37|U37 HGNC:10166 19 19p13.3 small nucleolar RNA, C/D box 37 snoRNA SNORD37 small nucleolar RNA, C/D box 37 O - 20121230 -9606 26813 SNORD36C - RNU36C|U36c HGNC:10165 9 9q34 small nucleolar RNA, C/D box 36C snoRNA SNORD36C small nucleolar RNA, C/D box 36C O - 20121230 -9606 26814 SNORD36B - RNU36B|U36b HGNC:10164 9 9q34 small nucleolar RNA, C/D box 36B snoRNA SNORD36B small nucleolar RNA, C/D box 36B O - 20121230 -9606 26815 SNORD36A - RNU36A|U36a HGNC:10163 9 9q34 small nucleolar RNA, C/D box 36A snoRNA SNORD36A small nucleolar RNA, C/D box 36A O - 20121230 -9606 26816 SNORD35A - RNU35|RNU35A|U35 HGNC:10162 19 19q13.3 small nucleolar RNA, C/D box 35A snoRNA SNORD35A small nucleolar RNA, C/D box 35A O - 20121230 -9606 26817 SNORD34 - RNU34|U34 HGNC:10161 19 19q13.3 small nucleolar RNA, C/D box 34 snoRNA SNORD34 small nucleolar RNA, C/D box 34 O - 20121230 -9606 26818 SNORD33 - RNU33|U33 HGNC:10160 19 19q13.3 small nucleolar RNA, C/D box 33 snoRNA SNORD33 small nucleolar RNA, C/D box 33 O - 20121230 -9606 26819 SNORD32A - RNU32|U32|U32A HGNC:10159 19 19q13.3 small nucleolar RNA, C/D box 32A snoRNA SNORD32A small nucleolar RNA, C/D box 32A O - 20121230 -9606 26820 SNORD24 - RNU24|U24 HGNC:10146 9 9q34 small nucleolar RNA, C/D box 24 snoRNA SNORD24 small nucleolar RNA, C/D box 24 O - 20121230 -9606 26821 SNORA74A - RNU19|U19 HGNC:10119 5 5q31.2 small nucleolar RNA, H/ACA box 74A snoRNA SNORA74A small nucleolar RNA, H/ACA box 74A O - 20121230 -9606 26822 SNORD14A - RNU14|RNU14A|U14|U14-S13-5 HGNC:10113 11 11p15 small nucleolar RNA, C/D box 14A snoRNA SNORD14A small nucleolar RNA, C/D box 14A O - 20121230 -9606 26823 RNU12-2P - RNU12|RNU12P|U12 HGNC:10109 X Xp11.23 RNA, U12 small nuclear 2, pseudogene pseudo RNU12-2P RNA, U12 small nuclear 2, pseudogene O - 20121230 -9606 26824 RNU11 - U11 HGNC:10108 1 1p35 RNA, U11 small nuclear snRNA RNU11 RNA, U11 small nuclear O - 20121230 -9606 26825 RNU6-50 - RNU6-50P|RNU6P1|U6 HGNC:10229 X Xp11.3 RNA, U6 small nuclear 50 pseudo RNU6-50 RNA, U6 small nuclear 50 O - 20121209 -9606 26826 RNU6-2 - RNU6B|U6 HGNC:10228 10 10p13 RNA, U6 small nuclear 2 snRNA RNU6-2 RNA, U6 small nuclear 2 O - 20121230 -9606 26827 RNU6-1 - RNU6|RNU6A|U6 HGNC:10227|MIM:180692 15 15q23 RNA, U6 small nuclear 1 snRNA RNU6-1 RNA, U6 small nuclear 1 O - 20121230 -9606 26828 RNU5F-1 - RNU5F|U5F HGNC:10216 1 1p34.1 RNA, U5F small nuclear 1 snRNA RNU5F-1 RNA, U5F small nuclear 1 O - 20121230 -9606 26829 RNU5E-1 - RNU5E|U5E HGNC:10215 1 1p36.22 RNA, U5E small nuclear 1 snRNA RNU5E-1 RNA, U5E small nuclear 1 O - 20121230 -9606 26830 RNU5D-1 - RNU5D|U5DL|U5DS HGNC:10214 1 1p34.1 RNA, U5D small nuclear 1 snRNA RNU5D-1 RNA, U5D small nuclear 1 O - 20121230 -9606 26831 RNU5A-1 - RNU5|RNU5A|RNU5C|U5A|U5B1 HGNC:10211|MIM:180691 15 15q22.31 RNA, U5A small nuclear 1 snRNA RNU5A-1 RNA, U5A small nuclear 1 O - 20121230 -9606 26832 RNU5B-1 - RNU5B|RNU5B-1P|U5B1 HGNC:10212 15 15q22.31 RNA, U5B small nuclear 1 snRNA RNU5B-1 RNA, U5B small nuclear 1 O - 20121230 -9606 26834 RNU4-2 - RNU4-1B|RNU4B1|RNU4C|U4A|U4b|U4c HGNC:10193 12 12q24.31 RNA, U4 small nuclear 2 snRNA RNU4-2 RNA, U4 small nuclear 2 O - 20121230 -9606 26835 RNU4-1 - RNU4A|RNU4B2|U4|U4BL HGNC:10192 12 12q24.31 RNA, U4 small nuclear 1 snRNA RNU4-1 RNA, U4 small nuclear 1 O - 20121230 -9606 26838 RNU4-6P - RNU4P6|U4|U4/8 HGNC:10199 X Xp22.2 RNA, U4 small nuclear 6, pseudogene pseudo RNU4-6P RNA, U4 small nuclear 6, pseudogene O - 20121230 -9606 26839 RNU4-5P - RNU4P5|U4|U4/6 HGNC:10198 10 10q25.1 RNA, U4 small nuclear 5, pseudogene pseudo RNU4-5P RNA, U4 small nuclear 5, pseudogene O - 20121230 -9606 26840 RNU4-4P - RNU4P4|U4|U4/5 HGNC:10197 3 3q26.31 RNA, U4 small nuclear 4, pseudogene pseudo RNU4-4P RNA, U4 small nuclear 4, pseudogene O - 20121021 -9606 26841 RNU4-3P - RNU4P3|U4|U4/4 HGNC:10196 18 18q12.2 RNA, U4 small nuclear 3, pseudogene pseudo RNU4-3P RNA, U4 small nuclear 3, pseudogene O - 20121230 -9606 26842 RNU3P4 - U3|U3.6 HGNC:10178 3 3q27.1 RNA, U3 small nucleolar pseudogene 4 pseudo RNU3P4 RNA, U3 small nucleolar pseudogene 4 O - 20121230 -9606 26843 RNU3P3 - U3|U3.5|u3.7 HGNC:10177 14 14q31.3 RNA, U3 small nucleolar pseudogene 3 pseudo RNU3P3 RNA, U3 small nucleolar pseudogene 3 O - 20121230 -9606 26844 RNU3P2 - U3|U3.2 HGNC:10176 8 8p21.3 RNA, U3 small nucleolar pseudogene 2 pseudo RNU3P2 RNA, U3 small nucleolar pseudogene 2 O - 20121230 -9606 26851 SNORD3B-1 - RNU3A1|U3a|U3b1|U3b2 HGNC:10168 17 17p11.2 small nucleolar RNA, C/D box 3B-1 snoRNA SNORD3B-1 small nucleolar RNA, C/D box 3B-1 O - 20121230 -9606 26852 RNU2-5P - RNU2P3 HGNC:10155 9 9q21.12 RNA, U2 small nuclear 5, pseudogene pseudo RNU2-5P RNA, U2 small nuclear 5, pseudogene O - 20121021 -9606 26853 RNU2-4P - RNU2P2|U2|U2/7 HGNC:10154 17 17q21.31 RNA, U2 small nuclear 4, pseudogene pseudo RNU2-4P RNA, U2 small nuclear 4, pseudogene O - 20121230 -9606 26854 RNU2-3P - RNU2P1|U2 HGNC:10153 15 15q26.2 RNA, U2 small nuclear 3, pseudogene pseudo RNU2-3P RNA, U2 small nuclear 3, pseudogene O - 20121021 -9606 26855 RNU2-2 - RNU2B|U2 HGNC:10152 11 11q12.3 RNA, U2 small nuclear 2 snRNA RNU2-2 RNA, U2 small nuclear 2 O - 20121230 -9606 26856 RNU1-10P - RNU1P10|U1.4|U1P14 HGNC:10133 1 1q21.1 RNA, U1 small nuclear 10, pseudogene pseudo RNU1-10P RNA, U1 small nuclear 10, pseudogene O - 20121209 -9606 26858 RNU1-15P - RNU1P8|U1P11 HGNC:10140 7 7p15.3 RNA, U1 small nuclear 15, pseudogene pseudo RNU1-15P RNA, U1 small nuclear 15, pseudogene O - 20121230 -9606 26859 RNU1-14P - RNU1P7|U1P17 HGNC:10139 7 7p12.1 RNA, U1 small nuclear 14, pseudogene pseudo RNU1-14P RNA, U1 small nuclear 14, pseudogene O - 20121230 -9606 26860 RNU1-13P - RNU1P6|U1.1|U1P1 HGNC:10138 1 1q21.1 RNA, U1 small nuclear 13, pseudogene pseudo RNU1-13P RNA, U1 small nuclear 13, pseudogene O - 20121209 -9606 26861 RNU1-11P - RNU1P1|RNU1P5|U1P1A HGNC:10137 6 6p24.1 RNA, U1 small nuclear 11, pseudogene pseudo RNU1-11P RNA, U1 small nuclear 11, pseudogene O - 20121230 -9606 26863 RNU1-5 - RNU1P1|RNU1P9|U1.15|U1P101|U1P15 HGNC:37496 1 1q21.2 RNA, U1 small nuclear 5 snRNA RNU1-5 RNA, U1 small nuclear 5 O - 20121230 -9606 26864 RNU1-9 - - HGNC:37500 1 1q21.1 RNA, U1 small nuclear 9 snRNA RNU1-9 RNA, U1 small nuclear 9 O - 20121230 -9606 26865 RNU1-7 - - HGNC:37497 14 14q13.1 RNA, U1 small nuclear 7 snRNA RNU1-7 RNA, U1 small nuclear 7 O - 20121230 -9606 26866 RNU1-8 - - HGNC:37498 14 14q13.1 RNA, U1 small nuclear 8 snRNA RNU1-8 RNA, U1 small nuclear 8 O - 20121230 -9606 26869 RNU1-3 - HSD4|RNU1G3 HGNC:10130 1 1p36.1 RNA, U1 small nuclear 3 snRNA RNU1-3 RNA, U1 small nuclear 3 O - 20121230 -9606 26870 RNU1-2 - RNU1C1|RNU1C2|U1C1|U1C21 HGNC:10123 1 1p36.1 RNA, U1 small nuclear 2 snRNA RNU1-2 RNA, U1 small nuclear 2 O - 20121230 -9606 26871 RNU1-1 - HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1 HGNC:10120 1 1p36.1 RNA, U1 small nuclear 1 snRNA RNU1-1 RNA, U1 small nuclear 1 O - 20121230 -9606 26872 STEAP1 tcag7.1170 PRSS24|STEAP HGNC:11378|MIM:604415|Ensembl:ENSG00000164647|HPRD:05106|Vega:OTTHUMG00000023006 7 7q21 six transmembrane epithelial antigen of the prostate 1 protein-coding STEAP1 six transmembrane epithelial antigen of the prostate 1 O metalloreductase STEAP1|six-transmembrane epithelial antigen of prostate 1 20121230 -9606 26873 OPLAH - 5-Opase|OPLA|OPLAHD HGNC:8149|MIM:614243|HPRD:14880 8 8q24.3 5-oxoprolinase (ATP-hydrolysing) protein-coding OPLAH 5-oxoprolinase (ATP-hydrolysing) O 5-oxo-L-prolinase|5-oxoprolinase|pyroglutamase 20121230 -9606 26952 SMR3A - P-B1|PBI|PRL5|PROL5 HGNC:19216|Ensembl:ENSG00000109208|HPRD:18077|Vega:OTTHUMG00000160839 4 4q13.3 submaxillary gland androgen regulated protein 3A protein-coding SMR3A submaxillary gland androgen regulated protein 3A O proline rich 5 (salivary)|proline- rich protein 5|proline-rich protein 5|proline-rich protein PBI|protein homologous to salivary proline-rich protein P-B|submaxillary gland androgen regulated protein 3 homolog A|submaxillary gland androgen-regulated protein 3A 20121230 -9606 26953 RANBP6 - - HGNC:9851|Ensembl:ENSG00000137040|HPRD:17953|Vega:OTTHUMG00000019512 9 9p24.1 RAN binding protein 6 protein-coding RANBP6 RAN binding protein 6 O Ran-GTP binding protein|ran-binding protein 6 20121230 -9606 26957 ABCD1P4 - ALD22Q11 HGNC:65 22 22q11 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 4 pseudo ABCD1P4 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 4 O - 20121230 -9606 26958 COPG2 - 2-COP HGNC:2237|MIM:604355|HPRD:05074 7 7q32 coatomer protein complex, subunit gamma 2 protein-coding COPG2 coatomer protein complex, subunit gamma 2 O coat protein, nonclathrin, gamma-2-cop|coatomer subunit gamma-2|gamma-2-COP|gamma-2-coat protein 20121230 -9606 26959 HBP1 - - HGNC:23200|Ensembl:ENSG00000105856|HPRD:13634|Vega:OTTHUMG00000157642 7 7q22-q31 HMG-box transcription factor 1 protein-coding HBP1 HMG-box transcription factor 1 O HMG box transcription factor 1|HMG box-containing protein 1|high mobility group box transcription factor 1 20121230 -9606 26960 NBEA RP11-270C18.1 BCL8B|LYST2 HGNC:7648|MIM:604889|Ensembl:ENSG00000172915|HPRD:05352|Vega:OTTHUMG00000016724 13 13q13 neurobeachin protein-coding NBEA neurobeachin O lysosomal-trafficking regulator 2 20121230 -9606 26973 CHORDC1 - CHP1 HGNC:14525|MIM:604353|Ensembl:ENSG00000110172|HPRD:05072|Vega:OTTHUMG00000167305 11 11q14.3 cysteine and histidine-rich domain (CHORD) containing 1 protein-coding CHORDC1 cysteine and histidine-rich domain (CHORD) containing 1 O CHORD-containing protein 1|CHP-1|chord domain-containing protein 1|cysteine and histidine-rich domain (CHORD)-containing 1|cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1|cysteine and histidine-rich domain-containing protein 1|protein morgana 20121230 -9606 26974 ZNF285 - ZNF285A HGNC:13079|Ensembl:ENSG00000267508|HPRD:15759|Vega:OTTHUMG00000178848 19 - zinc finger protein 285 protein-coding ZNF285 zinc finger protein 285 O zinc finger protein 285A 20121230 -9606 26978 PABPC1P3 - PABP3|PABPCP3 HGNC:8560 X Xq13.2 poly(A) binding protein, cytoplasmic 1 pseudogene 3 pseudo PABPC1P3 poly(A) binding protein, cytoplasmic 1 pseudogene 3 O - 20121230 -9606 26980 PABPC1P1 - PABP1|PABPCP1 HGNC:8558 4 4p14 poly(A) binding protein, cytoplasmic 1 pseudogene 1 pseudo PABPC1P1 poly(A) binding protein, cytoplasmic 1 pseudogene 1 O - 20121230 -9606 26982 ABCD1P3 - - HGNC:64 16 16p11 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 3 pseudo ABCD1P3 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 3 O - 20121230 -9606 26983 ABCD1P2 - bA453N3.6 HGNC:63 10 10p11 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 2 pseudo ABCD1P2 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 2 O - 20121230 -9606 26984 SEC22A - SEC22L2 HGNC:20260|MIM:612442|Ensembl:ENSG00000121542|HPRD:15313|Vega:OTTHUMG00000159495 3 3q21.1 SEC22 vesicle trafficking protein homolog A (S. cerevisiae) protein-coding SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) O SEC22 vesicle trafficking protein-like 2|SEC22 vesicle-trafficking protein homolog A|SEC22 vesicle-trafficking protein-like 2|sec22 homolog|vesicle-trafficking protein SEC22a 20121230 -9606 26985 AP3M1 - - HGNC:569|MIM:610366|Ensembl:ENSG00000185009|HPRD:16496|Vega:OTTHUMG00000018497 10 10q22.2 adaptor-related protein complex 3, mu 1 subunit protein-coding AP3M1 adaptor-related protein complex 3, mu 1 subunit O AP-3 adapter complex mu3A subunit|AP-3 complex subunit mu-1|adapter-related protein complex 3 mu-1 subunit|clathrin adaptor complex AP3, mu-3A subunit|mu-adaptin 3A|mu3A-adaptin 20121230 -9606 26986 PABPC1 - PAB1|PABP|PABP1|PABPC2|PABPL1 HGNC:8554|MIM:604679|Ensembl:ENSG00000070756|HPRD:05247|Vega:OTTHUMG00000164779 8 8q22.2-q23 poly(A) binding protein, cytoplasmic 1 protein-coding PABPC1 poly(A) binding protein, cytoplasmic 1 O poly(A) binding protein, cytoplasmic 2|polyadenylate-binding protein 1 20121230 -9606 26993 AKAP8L HRIHFB2018 HA95|HAP95|NAKAP|NAKAP95 HGNC:29857|MIM:609475|Ensembl:ENSG00000011243|HPRD:10641 19 19p13.12 A kinase (PRKA) anchor protein 8-like protein-coding AKAP8L A kinase (PRKA) anchor protein 8-like O A-kinase anchor protein 8-like|AKAP8-like protein|helicase A-binding protein 95 kDa|homologous to AKAP95 protein|neighbor of A kinase anchoring protein 95|neighbor of A-kinase anchoring protein 95|neighbor of A-kinase-anchoring protein 95|neighbor of AKAP95 20121230 -9606 26994 RNF11 CGI-123 SID1669 HGNC:10056|MIM:612598|Ensembl:ENSG00000123091|HPRD:09955|Vega:OTTHUMG00000008190 1 1p32 ring finger protein 11 protein-coding RNF11 ring finger protein 11 O RING finger protein 11 20121230 -9606 26995 TRUB2 - CLONE24922|RP11-339B21.1 HGNC:17170|MIM:610727|Ensembl:ENSG00000167112|HPRD:18230|Vega:OTTHUMG00000020741 9 9q34.11 TruB pseudouridine (psi) synthase homolog 2 (E. coli) protein-coding TRUB2 TruB pseudouridine (psi) synthase homolog 2 (E. coli) O probable tRNA pseudouridine synthase 2 20121230 -9606 26996 GPR160 - GPCR1|GPCR150 HGNC:23693|Ensembl:ENSG00000173890|HPRD:17069|Vega:OTTHUMG00000158776 3 3q26.2-q27 G protein-coupled receptor 160 protein-coding GPR160 G protein-coupled receptor 160 O G-protein coupled receptor GPCR1|hGPCR1|probable G-protein coupled receptor 160|putative G protein-coupled receptor 20121230 -9606 26998 FETUB - 16G2|Gugu|IRL685 HGNC:3658|MIM:605954|Ensembl:ENSG00000090512|HPRD:09335|Vega:OTTHUMG00000156586 3 3q27 fetuin B protein-coding FETUB fetuin B O fetuin-B|fetuin-like protein IRL685 20121230 -9606 26999 CYFIP2 - PIR121 HGNC:13760|MIM:606323|Ensembl:ENSG00000055163|HPRD:07556|Vega:OTTHUMG00000163484 5 5q33.3 cytoplasmic FMR1 interacting protein 2 protein-coding CYFIP2 cytoplasmic FMR1 interacting protein 2 O cytoplasmic FMR1-interacting protein 2|p53 inducible protein|p53-inducible protein 121 20121230 -9606 27000 DNAJC2 - MPHOSPH11|MPP11|ZRF1|ZUO1 HGNC:13192|MIM:605502|Ensembl:ENSG00000105821|Vega:OTTHUMG00000157202 7 7q22 DnaJ (Hsp40) homolog, subfamily C, member 2 protein-coding DNAJC2 DnaJ (Hsp40) homolog, subfamily C, member 2 O M-phase phosphoprotein 11|dnaJ homolog subfamily C member 2|zuotin related factor 1|zuotin-related factor 1 20121230 -9606 27002 PAFAH1B1P2 - LIS2P|PAFAH1P2 HGNC:8578 2 2q13 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 pseudogene 2 pseudo PAFAH1B1P2 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 pseudogene 2 O - 20121230 -9606 27004 TCL6 - TNG1|TNG2 HGNC:13463|MIM:604412|HPRD:05104 14 14q32.1 T-cell leukemia/lymphoma 6 (non-protein coding) miscRNA TCL6 T-cell leukemia/lymphoma 6 (non-protein coding) O - 20121230 -9606 27005 USP21 RP11-297K8.3 USP16|USP23 HGNC:12620|MIM:604729|Ensembl:ENSG00000143258|HPRD:05291|Vega:OTTHUMG00000033154 1 1q22 ubiquitin specific peptidase 21 protein-coding USP21 ubiquitin specific peptidase 21 O NEDD8-specific protease|deubiquitinating enzyme 21|ubiquitin carboxyl-terminal hydrolase 21|ubiquitin specific protease 21|ubiquitin thioesterase 21|ubiquitin thiolesterase 21|ubiquitin-specific processing protease 21|ubiquitin-specific protease 16|ubiquitin-specific-processing protease 21 20121230 -9606 27006 FGF22 UNQ2500/PRO5800 - HGNC:3679|MIM:605831|Ensembl:ENSG00000070388|HPRD:05784|Vega:OTTHUMG00000180591 19 19p13.3 fibroblast growth factor 22 protein-coding FGF22 fibroblast growth factor 22 O FGF-22 20121230 -9606 27010 TPK1 - HTPK1|PP20|THMD5 HGNC:17358|MIM:606370|Ensembl:ENSG00000196511|HPRD:06967|Vega:OTTHUMG00000152774 7 7q34-q35 thiamin pyrophosphokinase 1 protein-coding TPK1 thiamin pyrophosphokinase 1 O placental protein 20|thiamine diphosphokinase|thiamine kinase 20121230 -9606 27012 KCNV1 - HNKA|KCNB3|KV2.3|KV8.1 HGNC:18861|MIM:608164|Ensembl:ENSG00000164794|HPRD:16293|Vega:OTTHUMG00000165637 8 8q23.2 potassium channel, subfamily V, member 1 protein-coding KCNV1 potassium channel, subfamily V, member 1 O neuronal potassium channel alpha subunit HNKA|potassium channel Kv8.1|potassium voltage-gated channel subfamily V member 1|voltage-gated potassium channel subunit Kv8.1 20121230 -9606 27013 CNPPD1 CDABP0125 C2orf24|CGI-57 HGNC:25220|Ensembl:ENSG00000115649|HPRD:10780|Vega:OTTHUMG00000133132 2 2q35 cyclin Pas1/PHO80 domain containing 1 protein-coding CNPPD1 cyclin Pas1/PHO80 domain containing 1 O cyclin Pas1/PHO80 domain-containing protein 1|protein CNPPD1 20121230 -9606 27018 NGFRAP1 RP13-349O20.1 BEX3|Bex|DXS6984E|HGR74|NADE HGNC:13388|MIM:300361|Ensembl:ENSG00000166681|HPRD:02291|Vega:OTTHUMG00000022099 X Xq22.2 nerve growth factor receptor (TNFRSF16) associated protein 1 protein-coding NGFRAP1 nerve growth factor receptor (TNFRSF16) associated protein 1 O brain expressed, X-linked 3|brain-expressed X-linked protein 3|nerve growth factor receptor-associated protein 1|ovarian granulosa cell 13.0 kDa protein HGR74|ovarian granulosa cell protein (13kD)|p75NTR-associated cell death executor|protein BEX3 20121230 -9606 27019 DNAI1 RP11-296L22.2 CILD1|ICS|ICS1|PCD HGNC:2954|MIM:604366|Ensembl:ENSG00000122735|HPRD:05080|Vega:OTTHUMG00000019825 9 9p13.3 dynein, axonemal, intermediate chain 1 protein-coding DNAI1 dynein, axonemal, intermediate chain 1 O axonemal dynein intermediate chain 1|dynein intermediate chain 1, axonemal|dynein intermediate chain DNAI1|dynein, axonemal, intermediate polypeptide 1|immotile cilia syndrome 1 20121230 -9606 27020 NPTN - GP55|GP65|SDFR1|SDR1|np55|np65 HGNC:17867|MIM:612820|Ensembl:ENSG00000156642|HPRD:18033|Vega:OTTHUMG00000137586 15 15q22 neuroplastin protein-coding NPTN neuroplastin O SDR-1|stromal cell derived factor receptor 1|stromal cell-derived receptor 1 20121230 -9606 27022 FOXD3 - AIS1|Genesis|HFH2|VAMAS2 HGNC:3804|MIM:611539|Ensembl:ENSG00000187140|HPRD:07018|Vega:OTTHUMG00000009141 1 1p31.3 forkhead box D3 protein-coding FOXD3 forkhead box D3 O HNF3/FH transcription factor genesis|forkhead box protein D3 20121230 -9606 27023 FOXB1 - FKH5|HFKH-5 HGNC:3799|Ensembl:ENSG00000171956|HPRD:07017|Vega:OTTHUMG00000172011 15 15q22 forkhead box B1 protein-coding FOXB1 forkhead box B1 O forkhead box protein B1|transcription factor FKH-5 20121230 -9606 27030 MLH3 - HNPCC7 HGNC:7128|MIM:604395|Ensembl:ENSG00000119684|HPRD:05094|Vega:OTTHUMG00000171766 14 14q24.3 mutL homolog 3 (E. coli) protein-coding MLH3 mutL homolog 3 (E. coli) O DNA mismatch repair protein Mlh3|mutL protein homolog 3 20121230 -9606 27031 NPHP3 - MKS7|NPH3|RHPD HGNC:7907|MIM:608002|Ensembl:ENSG00000113971|HPRD:06417|Vega:OTTHUMG00000159713 3 3q22.1 nephronophthisis 3 (adolescent) protein-coding NPHP3 nephronophthisis 3 (adolescent) O Meckel syndrome, type 7|nephrocystin-3 20121230 -9606 27032 ATP2C1 HUSSY-28 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 HGNC:13211|MIM:604384|Ensembl:ENSG00000017260|HPRD:05089|Vega:OTTHUMG00000136802 3 3q22.1 ATPase, Ca++ transporting, type 2C, member 1 protein-coding ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 O ATP-dependent Ca(2+) pump PMR1|ATPase 2C1|ATPase, Ca(2+)-sequestering|HUSSY-28|calcium-transporting ATPase type 2C member 1|secretory pathway Ca2+/Mn2+ ATPase 1 20121230 -9606 27033 ZBTB32 - FAXF|FAZF|Rog|TZFP|ZNF538 HGNC:16763|MIM:605859|Ensembl:ENSG00000011590|HPRD:12055|Vega:OTTHUMG00000048118 19 19q13.1 zinc finger and BTB domain containing 32 protein-coding ZBTB32 zinc finger and BTB domain containing 32 O FANCC-interacting protein|fanconi anemia zinc finger protein|repressor of GATA|testis zinc finger protein|zinc finger and BTB domain-containing protein 32|zinc finger protein 538 20121230 -9606 27034 ACAD8 - ACAD-8|ARC42 HGNC:87|MIM:604773|Ensembl:ENSG00000151498|HPRD:11985|Vega:OTTHUMG00000167177 11 11q25 acyl-CoA dehydrogenase family, member 8 protein-coding ACAD8 acyl-CoA dehydrogenase family, member 8 O activator-recruited cofactor 42 kDa component|acyl-Coenzyme A dehydrogenase family, member 8|isobutyryl-CoA dehydrogenase, mitochondrial 20121230 -9606 27035 NOX1 RP1-146H21.1 GP91-2|MOX1|NOH-1|NOH1 HGNC:7889|MIM:300225|Ensembl:ENSG00000007952|HPRD:02203|Vega:OTTHUMG00000022007 X Xq22 NADPH oxidase 1 protein-coding NOX1 NADPH oxidase 1 O NADH/NADPH mitogenic oxidase subunit P65-MOX|NADPH oxidase homolog-1|mitogenic oxidase (pyridine nucleotide-dependent superoxide-generating)|mitogenic oxidase 1 20121230 -9606 27036 SIGLEC7 - AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|p75|p75/AIRM1 HGNC:10876|MIM:604410|Ensembl:ENSG00000168995|HPRD:05102 19 19q13.3 sialic acid binding Ig-like lectin 7 protein-coding SIGLEC7 sialic acid binding Ig-like lectin 7 O AIRM-1|QA79 membrane protein|adhesion inhibitory receptor molecule 1, siglec-7|sialic acid binding immunoglobulin-like lectin 7|sialic acid-binding Ig-like lectin 7 20121230 -9606 27037 TRMT2A - HTF9C HGNC:24974|MIM:611151|Ensembl:ENSG00000099899|HPRD:13719|Vega:OTTHUMG00000150454 22 22q11.21 tRNA methyltransferase 2 homolog A (S. cerevisiae) protein-coding TRMT2A tRNA methyltransferase 2 homolog A (S. cerevisiae) O TRM2 tRNA methyltransferase 2 homolog A|hpaII tiny fragments locus 9c protein|tRNA (uracil-5-)-methyltransferase homolog A 20121230 -9606 27038 ARVD6 - - MIM:604401 10 10p14-p12 arrhythmogenic right ventricular dysplasia 6 unknown - - - - 20120622 -9606 27039 PKD2L2 - TRPP5 HGNC:9012|MIM:604669|Ensembl:ENSG00000078795|HPRD:05238|Vega:OTTHUMG00000163306 5 5q31 polycystic kidney disease 2-like 2 protein-coding PKD2L2 polycystic kidney disease 2-like 2 O polycystic kidney disease 2-like 2 protein|polycystin-2L2|polycystin-L2 20121230 -9606 27040 LAT - LAT1|pp36 HGNC:18874|MIM:602354|Ensembl:ENSG00000213658|HPRD:03832|Vega:OTTHUMG00000131761 16 16p11.2 linker for activation of T cells protein-coding LAT linker for activation of T cells O 36 kDa phospho-tyrosine adapter protein|36 kDa phospho-tyrosine adaptor protein|linker for activation of T cells, transmembrane adaptor|linker for activation of T-cells family member 1|p36-38 20121230 -9606 27042 DIEXF RP3-434O14.6 C1orf107|DEF|DJ434O14.5|UTP25 HGNC:28440|Ensembl:ENSG00000117597|HPRD:14535|Vega:OTTHUMG00000036654 1 1q32.2 digestive organ expansion factor homolog (zebrafish) protein-coding DIEXF digestive organ expansion factor homolog (zebrafish) O digestive organ expansion factor homolog|digestive-organ expansion factor homolog 20121230 -9606 27043 PELP1 - HMX3|MNAR|P160 HGNC:30134|MIM:609455|Ensembl:ENSG00000141456|HPRD:10144|Vega:OTTHUMG00000177831 17 17p13.2 proline, glutamate and leucine rich protein 1 protein-coding PELP1 proline, glutamate and leucine rich protein 1 O modulator of non-genomic activity of estrogen receptor|modulator of nongenomic activity of estrogen receptor|proline and glutamic acid rich nuclear protein|proline, glutamic acid and leucine rich protein 1|proline-, glutamic acid- and leucine-rich protein 1|proline-, glutamic acid-, leucine-rich protein 1|transcription factor HMX3 20121230 -9606 27044 SND1 - TDRD11|p100 HGNC:30646|MIM:602181|Ensembl:ENSG00000197157|HPRD:03714|Vega:OTTHUMG00000157560 7 7q31.3 staphylococcal nuclease and tudor domain containing 1 protein-coding SND1 staphylococcal nuclease and tudor domain containing 1 O 100 kDa coactivator|EBNA-2 co-activator (100kD)|EBNA2 coactivator p100|SND1-BRAF fusion|p100 EBNA2 co-activator|p100 co-activator|staphylococcal nuclease domain containing 1|staphylococcal nuclease domain-containing protein 1|tudor domain-containing protein 11 20121230 -9606 27063 ANKRD1 - ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 HGNC:15819|MIM:609599|Ensembl:ENSG00000148677|HPRD:10647|Vega:OTTHUMG00000018734 10 10q23.31 ankyrin repeat domain 1 (cardiac muscle) protein-coding ANKRD1 ankyrin repeat domain 1 (cardiac muscle) O ankyrin repeat domain-containing protein 1|cardiac ankyrin repeat protein|cytokine-inducible gene C-193 protein|cytokine-inducible nuclear protein|liver ankyrin repeat domain 1 20121230 -9606 27065 NSG1 - D4S234|D4S234E|NEEP21|P21 MIM:607645|Ensembl:ENSG00000168824|HPRD:09624|Vega:OTTHUMG00000160002 4 4p16.3 neuron specific gene family member 1 protein-coding - - - brain neuron cytoplasmic protein 1|carboxyterminally EE-tagged neuron-enriched endosomal 21 kDa protein|neuron-specific protein family member 1 20121230 -9606 27067 STAU2 - 39K2|39K3 HGNC:11371|MIM:605920|Ensembl:ENSG00000040341|HPRD:09328|Vega:OTTHUMG00000164499 8 8q21.11 staufen, RNA binding protein, homolog 2 (Drosophila) protein-coding STAU2 staufen, RNA binding protein, homolog 2 (Drosophila) O double-stranded RNA-binding protein Staufen homolog 2|staufen homolog 2 20121230 -9606 27068 PPA2 HSPC124 SID6-306 HGNC:28883|MIM:609988|Ensembl:ENSG00000138777|HPRD:18494|Vega:OTTHUMG00000128781 4 4q25 pyrophosphatase (inorganic) 2 protein-coding PPA2 pyrophosphatase (inorganic) 2 O PPase 2|inorganic pyrophosphatase 2, mitochondrial|pyrophosphatase SID6-306|pyrophosphate phospho-hydrolase 2 20121230 -9606 27069 GHITM My021 DERP2|HSPC282|MICS1|PTD010|TMBIM5 HGNC:17281|Ensembl:ENSG00000165678|HPRD:17038|Vega:OTTHUMG00000018637 10 10q23.1 growth hormone inducible transmembrane protein protein-coding GHITM growth hormone inducible transmembrane protein O dermal papilla-derived protein 2|growth hormone-inducible transmembrane protein|mitochondrial morphology and cristae structure 1|transmembrane BAX inhibitor motif containing 5|transmembrane BAX inhibitor motif-containing protein 5 20121230 -9606 27071 DAPP1 HSPC066 BAM32 HGNC:16500|MIM:605768|Ensembl:ENSG00000070190|HPRD:05773|Vega:OTTHUMG00000160974 4 4q25-q27 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding DAPP1 dual adaptor of phosphotyrosine and 3-phosphoinositides O B-cell adapter molecule of 32 kDa|b lymphocyte adapter protein Bam32|dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide|hDAPP1 20121230 -9606 27072 VPS41 - HVPS41|HVSP41|hVps41p HGNC:12713|MIM:605485|Ensembl:ENSG00000006715|HPRD:10402|Vega:OTTHUMG00000023629 7 7p14-p13 vacuolar protein sorting 41 homolog (S. cerevisiae) protein-coding VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae) O S53|vacuolar assembly protein 41|vacuolar protein sorting-associated protein 41 homolog 20121230 -9606 27074 LAMP3 - CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403 HGNC:14582|MIM:605883|Ensembl:ENSG00000078081|HPRD:12062|Vega:OTTHUMG00000158387 3 3q26.3-q27 lysosomal-associated membrane protein 3 protein-coding LAMP3 lysosomal-associated membrane protein 3 O DC-lysosome-associated membrane glycoprotein|lysosome-associated membrane glycoprotein 3 20121230 -9606 27075 TSPAN13 UNQ260/PRO296 NET-6|NET6|TM4SF13 HGNC:21643|MIM:613139|Ensembl:ENSG00000106537|HPRD:15510|Vega:OTTHUMG00000022968 7 7p21.1 tetraspanin 13 protein-coding TSPAN13 tetraspanin 13 O tetraspan NET-6|tetraspanin-13|transmembrane 4 superfamily member 13|transmembrane 4 superfamily member tetraspan NET-6|tspan-13 20121230 -9606 27076 LYPD3 UNQ491/PRO1007 C4.4A HGNC:24880|MIM:609484|Ensembl:ENSG00000124466|HPRD:10783 19 19q13.31 LY6/PLAUR domain containing 3 protein-coding LYPD3 LY6/PLAUR domain containing 3 O 2310061G07Rik|GPI-anchored metastasis-associated protein C4.4A homolog|GPI-anchored metastasis-associated protein homolog|MIG-C4|ly6/PLAUR domain-containing protein 3|matrigel-induced gene C4 protein 20121230 -9606 27077 B9D1 - B9|EPPB9|MKS9|MKSR1 HGNC:24123|MIM:614144|Ensembl:ENSG00000108641|HPRD:16866|Vega:OTTHUMG00000059586 17 17p11.2 B9 protein domain 1 protein-coding B9D1 B9 protein domain 1 O B9 domain-containing protein 1|MKS1-related protein 1|endothelial precursor protein B9 20121230 -9606 27079 RPUSD2 - C15orf19|C18B11 HGNC:24180|Ensembl:ENSG00000166133|HPRD:12668|Vega:OTTHUMG00000130031 15 15q13.3 RNA pseudouridylate synthase domain containing 2 protein-coding RPUSD2 RNA pseudouridylate synthase domain containing 2 O C18B11 homolog (44.9kD)|RNA pseudouridylate synthase domain-containing protein 2 20121230 -9606 27085 MTBP - MDM2BP HGNC:7417|MIM:605927|Ensembl:ENSG00000172167|HPRD:12068|Vega:OTTHUMG00000165040 8 8q24.12 Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa protein-coding MTBP Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa O MDM2 (mouse double minute 2)-binding protein, 104kD|mdm2-binding protein 20121230 -9606 27086 FOXP1 HSPC215 12CC4|QRF1|hFKH1B HGNC:3823|MIM:605515|Ensembl:ENSG00000114861|HPRD:18518|Vega:OTTHUMG00000158803 3 3p14.1 forkhead box P1 protein-coding FOXP1 forkhead box P1 O fork head-related protein like B|forkhead box protein P1|glutamine-rich factor 1 20121230 -9606 27087 B3GAT1 - CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1 HGNC:921|MIM:151290|Ensembl:ENSG00000109956|HPRD:06969|Vega:OTTHUMG00000167180 11 11q25 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) protein-coding B3GAT1 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) O LEU7 antigen|UDP-GlcUA:glycoprotein beta-1,3-glucuronyltransferase|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1|glcUAT-P|glucuronosyltransferase P 20121230 -9606 27089 UQCRQ - QCR8|QP-C|QPC|UQCR7 HGNC:29594|MIM:612080|Ensembl:ENSG00000164405|HPRD:17941|Vega:OTTHUMG00000059836 5 5q31.1 ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa protein-coding UQCRQ ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa O complex III subunit 8|complex III subunit VIII|cytochrome b-c1 complex subunit 8|low molecular mass ubiquinone-binding protein (9.5kD)|ubiquinol-cytochrome c reductase complex 9.5 kDa protein|ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C 20121230 -9606 27090 ST6GALNAC4 RP11-203J24.4 SIAT3C|SIAT7D|ST6GALNACIV HGNC:17846|MIM:606378|Ensembl:ENSG00000136840|HPRD:05902|Vega:OTTHUMG00000020724 9 9q34 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein-coding ST6GALNAC4 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 O NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc-alpha-2, 6-sialyltransferase alpha2,6-sialyltransferase|NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc-alpha-2,6-sialyltransferase IV|SIAT3-C|SIAT7-D|ST6 neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminidealpha-2,6-sialyltransferase 4|ST6GalNAc IV|alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase|sialyltransferase 3C|sialyltransferase 7D ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) 20121230 -9606 27091 CACNG5 - - HGNC:1409|MIM:606405|Ensembl:ENSG00000075429|HPRD:05912|Vega:OTTHUMG00000166468 17 17q24 calcium channel, voltage-dependent, gamma subunit 5 protein-coding CACNG5 calcium channel, voltage-dependent, gamma subunit 5 O TARP gamma-5|neuronal voltage-gated calcium channel gamma-5 subunit|transmembrane AMPAR regulatory protein gamma-5|voltage-dependent calcium channel gamma-5 subunit 20121230 -9606 27092 CACNG4 - - HGNC:1408|MIM:606404|Ensembl:ENSG00000075461|HPRD:05911|Vega:OTTHUMG00000179550 17 17q24 calcium channel, voltage-dependent, gamma subunit 4 protein-coding CACNG4 calcium channel, voltage-dependent, gamma subunit 4 O TARP gamma-4|neuronal voltage-gated calcium channel gamma-4 subunit|transmembrane AMPAR regulatory protein gamma-4|voltage-dependent calcium channel gamma-4 subunit 20121230 -9606 27093 KCNMB3P1 - KCNMB2L|KCNMB3L|KCNMB3L1|KCNMBLP HGNC:6288 22 22q11 potassium large conductance calcium-activated channel, subfamily M, beta member 3 pseudogene 1 pseudo KCNMB3P1 potassium large conductance calcium-activated channel, subfamily M, beta member 3 pseudogene 1 O - 20121230 -9606 27094 KCNMB3 - BKBETA3|HBETA3|KCNMB2|KCNMBL|SLOBETA3 HGNC:6287|MIM:605222|Ensembl:ENSG00000171121|HPRD:05563|Vega:OTTHUMG00000157337 3 3q26.3-q27 potassium large conductance calcium-activated channel, subfamily M beta member 3 protein-coding KCNMB3 potassium large conductance calcium-activated channel, subfamily M beta member 3 O BK channel subunit beta-3|K(VCA)beta-3|calcium-activated potassium channel subunit beta-3|calcium-activated potassium channel, subfamily M subunit beta-3|charybdotoxin receptor subunit beta-3|large conductance, voltage and Ca2+ activated potassium channel Maxi K beta 3 subunit|maxi K channel subunit beta-3|slo-beta-3 20121230 -9606 27095 TRAPPC3 CDABP0066 BET3 HGNC:19942|MIM:610955|Ensembl:ENSG00000054116|HPRD:11644|Vega:OTTHUMG00000007664 1 1p34.3 trafficking protein particle complex 3 protein-coding TRAPPC3 trafficking protein particle complex 3 O trafficking protein particle complex subunit 3 20121230 -9606 27097 TAF5L RP4-613A2.4 PAF65B HGNC:17304|Ensembl:ENSG00000135801|HPRD:11619|Vega:OTTHUMG00000039463 1 1q42.13 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa protein-coding TAF5L TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa O PAF65-beta|PCAF associated factor 65 beta|PCAF-associated factor 65 beta|TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L 20121230 -9606 27098 CLUL1 - RA337M HGNC:2096|Ensembl:ENSG00000079101|HPRD:16726|Vega:OTTHUMG00000178252 18 18p11.32 clusterin-like 1 (retinal) protein-coding CLUL1 clusterin-like 1 (retinal) O clusterin-like protein 1|retinal-specific clusterin-like protein 20121230 -9606 27099 SND1-IT1 - C7orf54|NAG8|NSG-X HGNC:24158|HPRD:18483 7 7q31 SND1 intronic transcript 1 (non-protein coding) miscRNA SND1-IT1 SND1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 27101 CACYBP PNAS-107 GIG5|RP1-102G20.6|S100A6BP|SIP HGNC:30423|MIM:606186|Ensembl:ENSG00000116161|HPRD:07316|Vega:OTTHUMG00000034941 1 1q24-q25 calcyclin binding protein protein-coding CACYBP calcyclin binding protein O S100A6-binding protein|Siah-interacting protein (SIP)|calcyclin-binding protein|growth-inhibiting gene 5 protein|hCacyBP 20121230 -9606 27102 EIF2AK1 PRO1362 HCR|HRI HGNC:24921|MIM:613635|Ensembl:ENSG00000086232|HPRD:10684|Vega:OTTHUMG00000090689 7 7p22 eukaryotic translation initiation factor 2-alpha kinase 1 protein-coding EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1 O heme regulated initiation factor 2 alpha kinase|heme sensitive initiation factor 2a kinase|heme-controlled repressor|heme-regulated eukaryotic initiation factor eIF-2-alpha kinase|heme-regulated inhibitor|heme-regulated initiation factor 2-alpha kinase|heme-regulated repressor|hemin-sensitive initiation factor 2-alpha kinase 20121230 -9606 27106 ARRDC2 PP2703 CLONE24945 HGNC:25225|Ensembl:ENSG00000105643|HPRD:12492 19 19p13.11 arrestin domain containing 2 protein-coding ARRDC2 arrestin domain containing 2 O arrestin domain-containing protein 2 20121230 -9606 27107 ZBTB11 - ZNF-U69274|ZNF913 HGNC:16740|Ensembl:ENSG00000066422|HPRD:15690|Vega:OTTHUMG00000159133 3 3q12.3 zinc finger and BTB domain containing 11 protein-coding ZBTB11 zinc finger and BTB domain containing 11 O zinc finger and BTB domain-containing protein 11 20121230 -9606 27109 ATP5S - ATPW|FB|HSU79253 HGNC:18799|Ensembl:ENSG00000125375|HPRD:12503|Vega:OTTHUMG00000170866 14 14q21.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B) protein-coding ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B) O ATP synthase coupling factor B, mitochondrial|ATP synthase coupling factor B-like 1|ATP synthase subunit s, mitochondrial|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)|ATP synthase-coupling factor B|mitochondrial ATP synthase regulatory component factor B 20121230 -9606 27111 SDCBP2 - SITAC|SITAC18|ST-2 HGNC:15756|Ensembl:ENSG00000125775|HPRD:18032|Vega:OTTHUMG00000031661 20 20p13 syndecan binding protein (syntenin) 2 protein-coding SDCBP2 syndecan binding protein (syntenin) 2 O syntenin-2 20121230 -9606 27112 FAM155B - CXorf63|TED|TMEM28|bB57D9.1 HGNC:30701|Ensembl:ENSG00000130054|HPRD:06740|Vega:OTTHUMG00000021756 X Xq13.1 family with sequence similarity 155, member B protein-coding FAM155B family with sequence similarity 155, member B O bB57D9.1 (TED protein)|transmembrane protein 28|transmembrane protein FAM155B 20121230 -9606 27113 BBC3 - JFY-1|JFY1|PUMA HGNC:17868|MIM:605854|Ensembl:ENSG00000105327|HPRD:16165 19 19q13.3-q13.4 BCL2 binding component 3 protein-coding BBC3 BCL2 binding component 3 O bcl-2-binding component 3|p53 up-regulated modulator of apoptosis 20121230 -9606 27115 PDE7B RP11-472E5.2 bA472E5.1 HGNC:8792|MIM:604645|Ensembl:ENSG00000171408|HPRD:06870|Vega:OTTHUMG00000015641 6 6q23-q24 phosphodiesterase 7B protein-coding PDE7B phosphodiesterase 7B O cAMP-specific 3',5'-cyclic phosphodiesterase 7B|high-affinity cAMP-specific 3',5'-cyclic phosphodiesterase|rolipram-insensitive phosphodiesterase type 7 20121230 -9606 27120 DKKL1 UNQ735/PRO1429 CT34|SGY|SGY-1|SGY1 HGNC:16528|MIM:605418|Ensembl:ENSG00000104901|HPRD:10396 19 19q13.33 dickkopf-like 1 protein-coding DKKL1 dickkopf-like 1 O cancer/testis antigen 34|dickkopf-like protein 1|protein soggy-1|soggy|soggy-1 20121230 -9606 27121 DKK4 - DKK-4 HGNC:2894|MIM:605417|Ensembl:ENSG00000104371|HPRD:05660|Vega:OTTHUMG00000164167 8 8p11.2-p11.1 dickkopf homolog 4 (Xenopus laevis) protein-coding DKK4 dickkopf homolog 4 (Xenopus laevis) O dickkopf-4|dickkopf-related protein 4|hDkk-4 20121230 -9606 27122 DKK3 UNQ258/PRO295 REIC|RIG HGNC:2893|MIM:605416|Ensembl:ENSG00000050165|HPRD:05659|Vega:OTTHUMG00000165709 11 11p15.2 dickkopf 3 homolog (Xenopus laevis) protein-coding DKK3 dickkopf 3 homolog (Xenopus laevis) O RIG-like 5-6|RIG-like 7-1|dickkopf homolog 3|dickkopf-3|dickkopf-related protein 3|dkk-3|hDkk-3|regulated in glioma 20121230 -9606 27123 DKK2 UNQ682/PRO1316 DKK-2 HGNC:2892|MIM:605415|Ensembl:ENSG00000155011|HPRD:05658|Vega:OTTHUMG00000131216 4 4q25 dickkopf 2 homolog (Xenopus laevis) protein-coding DKK2 dickkopf 2 homolog (Xenopus laevis) O dickkopf homolog 2|dickkopf related protein-2|dickkopf-2|dickkopf-related protein 2|hDkk-2 20121230 -9606 27124 INPP5J - INPP5|PIB5PA|PIPP HGNC:8956|MIM:606481|Ensembl:ENSG00000185133|HPRD:07573|Vega:OTTHUMG00000151206 22 22q12.2 inositol polyphosphate-5-phosphatase J protein-coding INPP5J inositol polyphosphate-5-phosphatase J O inositol polyphosphate 5-phosphatase J|phosphatidylinositol (4,5) bisphosphate 5-phosphatase, A|phosphatidylinositol 4,5-bisphosphate 5-phosphatase A 20121230 -9606 27125 AFF4 HSPC092 AF5Q31|MCEF HGNC:17869|MIM:604417|Ensembl:ENSG00000072364|HPRD:09187|Vega:OTTHUMG00000059838 5 5q31 AF4/FMR2 family, member 4 protein-coding AFF4 AF4/FMR2 family, member 4 O AF4/FMR2 family member 4|ALL1-fused gene from chromosome 5q31 protein|major CDK9 elongation factor-associated protein 20121230 -9606 27127 SMC1B RP1-102D24.3 SMC1BETA|SMC1L2|bK268H5|bK268H5.5 HGNC:11112|MIM:608685|Ensembl:ENSG00000077935|HPRD:10564|Vega:OTTHUMG00000151334 22 22q13.31 structural maintenance of chromosomes 1B protein-coding SMC1B structural maintenance of chromosomes 1B O SMC protein 1B|SMC-1-beta|SMC-1B|SMC1 (structural maintenance of chromosomes 1, yeast)-like 1|SMC1 structural maintenance of chromosomes 1-like 2|mitosis-specific chromosome segregation protein like protein beta|structural maintenance of chromosomes protein 1B 20121230 -9606 27128 CYTH4 RP1-63G5.4 CYT4|DJ63G5.1|PSCD4 HGNC:9505|MIM:606514|Ensembl:ENSG00000100055|HPRD:07354|Vega:OTTHUMG00000150562 22 22q12.3-q13.1 cytohesin 4 protein-coding CYTH4 cytohesin 4 O PH, SEC7 and coiled-coil domain-containing protein 4|cytohesin-4|pleckstrin homology, Sec7 and coiled-coil domains 4|pleckstrin homology, Sec7 and coiled/coil domains 4 20121230 -9606 27129 HSPB7 RP11-5P18.6 cvHSP HGNC:5249|MIM:610692|Ensembl:ENSG00000173641|HPRD:13684|Vega:OTTHUMG00000009531 1 1p36.23-p34.3 heat shock 27kDa protein family, member 7 (cardiovascular) protein-coding HSPB7 heat shock 27kDa protein family, member 7 (cardiovascular) O cardiovascular heat shock protein|heat shock 27kD protein family, member 7 (cardiovascular)|heat shock protein beta-7 20121230 -9606 27130 INVS RP11-208F1.1 INV|NPH2|NPHP2 HGNC:17870|MIM:243305|Ensembl:ENSG00000119509|HPRD:08356|Vega:OTTHUMG00000020364 9 9q31 inversin protein-coding INVS inversin O inversion of embryo turning homolog|inversion of embryonic turning|nephrocystin-2 20121230 -9606 27131 SNX5 RP11-504H3.2 - HGNC:14969|MIM:605937|Ensembl:ENSG00000089006|HPRD:10439|Vega:OTTHUMG00000031953 20 20p11 sorting nexin 5 protein-coding SNX5 sorting nexin 5 O sorting nexin-5 20121230 -9606 27132 CPNE7 - - HGNC:2320|MIM:605689|Ensembl:ENSG00000178773|HPRD:05749|Vega:OTTHUMG00000138051 16 16q24.3 copine VII protein-coding CPNE7 copine VII O copine 7|copine-7 20121230 -9606 27133 KCNH5 - EAG2|H-EAG2|Kv10.2 HGNC:6254|MIM:605716|Ensembl:ENSG00000140015|HPRD:10421|Vega:OTTHUMG00000029041 14 14q23.1 potassium voltage-gated channel, subfamily H (eag-related), member 5 protein-coding KCNH5 potassium voltage-gated channel, subfamily H (eag-related), member 5 O ether-a-go-go potassium channel 2|ether-a-go-go-related potassium channel 2|hEAG2|potassium channel HEAG2|potassium voltage-gated channel subfamily H member 5|voltage-gated potassium channel EAG2|voltage-gated potassium channel subunit Kv10.2 20121230 -9606 27134 TJP3 - ZO-3|ZO3 HGNC:11829|MIM:612689|Ensembl:ENSG00000105289|HPRD:18194|Vega:OTTHUMG00000180872 19 19p13.3 tight junction protein 3 protein-coding TJP3 tight junction protein 3 O tight junction protein 3 (zona occludens 3)|tight junction protein ZO-3|zona occludens protein 3|zonula occludens protein 3 20121230 -9606 27136 MORC1 - CT33|MORC|ZCW6 HGNC:7198|MIM:603205|Ensembl:ENSG00000114487|HPRD:04439|Vega:OTTHUMG00000159209 3 3q13 MORC family CW-type zinc finger 1 protein-coding MORC1 MORC family CW-type zinc finger 1 O MORC family CW-type zinc finger protein 1|cancer/testis antigen 33|microrchidia, mouse, homolog of 20121230 -9606 27141 CIDEB - - HGNC:1977|MIM:604441|Ensembl:ENSG00000136305|HPRD:11981|Vega:OTTHUMG00000171555 14 14q12 cell death-inducing DFFA-like effector b protein-coding CIDEB cell death-inducing DFFA-like effector b O cell death activator CIDE-B 20121230 -9606 27143 PALD1 RP11-710A11.1 KIAA1274|PALD HGNC:23530|MIM:614656|Ensembl:ENSG00000107719|HPRD:11419|Vega:OTTHUMG00000018411 10 10q22.1 phosphatase domain containing, paladin 1 protein-coding PALD1 phosphatase domain containing, paladin 1 O paladin|palladin 20121230 -9606 27145 FILIP1 - FILIP HGNC:21015|MIM:607307|Ensembl:ENSG00000118407|HPRD:09533|Vega:OTTHUMG00000015056 6 6q14.1 filamin A interacting protein 1 protein-coding FILIP1 filamin A interacting protein 1 O filamin-A-interacting protein 1 20121230 -9606 27146 FAM184B - - HGNC:29235|Ensembl:ENSG00000047662|Vega:OTTHUMG00000160287 4 4p16 family with sequence similarity 184, member B protein-coding FAM184B family with sequence similarity 184, member B O protein FAM184B 20121230 -9606 27147 DENND2A - FAM31D|KIAA1277 HGNC:22212|Ensembl:ENSG00000146966|HPRD:17210|Vega:OTTHUMG00000157411 7 7q34 DENN/MADD domain containing 2A protein-coding DENND2A DENN/MADD domain containing 2A O DENN domain-containing protein 2A 20121230 -9606 27148 STK36 - FU HGNC:17209|MIM:607652|Ensembl:ENSG00000163482|HPRD:09631|Vega:OTTHUMG00000133079 2 2q35 serine/threonine kinase 36 protein-coding STK36 serine/threonine kinase 36 O fused homolog|serine/threonine-protein kinase 36 20121230 -9606 27151 CPAMD8 - K-CAP|VIP HGNC:23228|MIM:608841|Ensembl:ENSG00000160111|HPRD:09892|Vega:OTTHUMG00000133549 19 19p13.11 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 protein-coding CPAMD8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8|alpha-2 macroglobulin family protein VIP 20121230 -9606 27152 INTU - INT|PDZD6|PDZK6 HGNC:29239|MIM:610621|Ensembl:ENSG00000164066|HPRD:15113|Vega:OTTHUMG00000161202 4 4q28.1 inturned planar cell polarity effector homolog (Drosophila) protein-coding INTU inturned planar cell polarity effector homolog (Drosophila) O PDZ domain containing 6|PDZ domain-containing protein 6|homolog of inturned|protein inturned 20121230 -9606 27153 ZNF777 - - HGNC:22213|Ensembl:ENSG00000196453|HPRD:13849|Vega:OTTHUMG00000158967 7 7q36.1 zinc finger protein 777 protein-coding ZNF777 zinc finger protein 777 O - 20121230 -9606 27154 BRPF3 RP3-524E15.1 - HGNC:14256|Ensembl:ENSG00000096070|HPRD:16565|Vega:OTTHUMG00000014589 6 6p21 bromodomain and PHD finger containing, 3 protein-coding BRPF3 bromodomain and PHD finger containing, 3 O bromodomain and PHD finger-containing protein 3 20121230 -9606 27156 RTDR1 - - HGNC:13437|MIM:605663|Ensembl:ENSG00000100218|HPRD:16136|Vega:OTTHUMG00000150602 22 22q11.2 rhabdoid tumor deletion region gene 1 protein-coding RTDR1 rhabdoid tumor deletion region gene 1 O rhabdoid tumor deletion region protein 1 20121230 -9606 27158 NDOR1 RP11-350O14.11-001 NR1|bA350O14.9 HGNC:29838|MIM:606073|Ensembl:ENSG00000188566|HPRD:10444|Vega:OTTHUMG00000020986 9 9q34.3 NADPH dependent diflavin oxidoreductase 1 protein-coding NDOR1 NADPH dependent diflavin oxidoreductase 1 O NADPH-dependent FMN and FAD-containing oxidoreductase|NADPH-dependent diflavin oxidoreductase 1 20121230 -9606 27159 CHIA RP5-1125M8.1 AMCASE|CHIT2|TSA1902 HGNC:17432|MIM:606080|Ensembl:ENSG00000134216|HPRD:09355|Vega:OTTHUMG00000011165 1 1p13.2 chitinase, acidic protein-coding CHIA chitinase, acidic O acidic mammalian chitinase|lung-specific protein TSA1902 20121230 -9606 27160 INGX - ING1-like|ING2 HGNC:6064|MIM:300452|HPRD:02348 X Xq12 inhibitor of growth family, X-linked, pseudogene pseudo INGX inhibitor of growth family, X-linked, pseudogene O - 20121230 -9606 27161 EIF2C2 - AGO2|Q10 HGNC:3263|MIM:606229|Ensembl:ENSG00000123908|HPRD:06943|Vega:OTTHUMG00000164232 8 8q24 eukaryotic translation initiation factor 2C, 2 protein-coding EIF2C2 eukaryotic translation initiation factor 2C, 2 O PAZ Piwi domain protein|PPD|argonaute 2|argonaute2|eIF-2C 2|eIF2C 2|hAgo2|protein argonaute-2|protein slicer 20121230 -9606 27163 NAAA - ASAHL|PLT HGNC:736|MIM:607469|Ensembl:ENSG00000138744|HPRD:12122|Vega:OTTHUMG00000160855 4 4q21.1 N-acylethanolamine acid amidase protein-coding NAAA N-acylethanolamine acid amidase O ASAH-like protein|N-acylethanolamine-hydrolyzing acid amidase|acid ceramidase-like protein 20121230 -9606 27164 SALL3 - ZNF796 HGNC:10527|MIM:605079|Ensembl:ENSG00000256463|HPRD:05467|Vega:OTTHUMG00000132896 18 18q23 sal-like 3 (Drosophila) protein-coding SALL3 sal-like 3 (Drosophila) O C2H2 zinc finger protein SALL3|hSALL3|sal-like protein 3|spalt-like zinc finger protein|zinc finger protein 796 20121230 -9606 27165 GLS2 - GA|GLS|LGA|hLGA HGNC:29570|MIM:606365|Ensembl:ENSG00000135423|HPRD:05901|Vega:OTTHUMG00000140379 12 12q13 glutaminase 2 (liver, mitochondrial) protein-coding GLS2 glutaminase 2 (liver, mitochondrial) O L-glutaminase|L-glutamine amidohydrolase|breast cell glutaminase|glutaminase GA|glutaminase I|glutaminase liver isoform, mitochondrial|phosphate-activated glutaminase|phosphate-dependent glutaminase 20121230 -9606 27166 PRELID1 CGI-106 PRELI|PX19|SBBI12 HGNC:30255|MIM:605733|Ensembl:ENSG00000169230|HPRD:16149|Vega:OTTHUMG00000130847 5 5q35.3 PRELI domain containing 1 protein-coding PRELID1 PRELI domain containing 1 O 25 kDa protein of relevant evolutionary and lymphoid interest|PRELI domain-containing protein 1, mitochondrial|px19-like protein 20121230 -9606 27168 KERSMCR - - HGNC:6310 17 17p11.2 cytokeratin, Smith Magenis syndrome chromosome region other KERSMCR cytokeratin, Smith Magenis syndrome chromosome region O - 20121201 -9606 27169 TRESMCR - - HGNC:12268 17 17p11.2 TRE oncogene, Smith Magenis syndrome chromosome region other TRESMCR TRE oncogene, Smith Magenis syndrome chromosome region O - 20121201 -9606 27170 COTL1P1 - CLPSMCR HGNC:2086 17 17p11.2 coactosin-like 1 (Dictyostelium) pseudogene 1 pseudo COTL1P1 coactosin-like 1 (Dictyostelium) pseudogene 1 O - 20121230 -9606 27173 SLC39A1 CGI-08 ZIP1|ZIRTL HGNC:12876|MIM:604740|Ensembl:ENSG00000143570|HPRD:11984|Vega:OTTHUMG00000037158 1 1q21 solute carrier family 39 (zinc transporter), member 1 protein-coding SLC39A1 solute carrier family 39 (zinc transporter), member 1 O solute carrier family 39 (zinc transporter), member 3|zinc transporter ZIP1|zrt- and Irt-like protein 1 20121230 -9606 27175 TUBG2 - - HGNC:12419|MIM:605785|Ensembl:ENSG00000037042|HPRD:05778|Vega:OTTHUMG00000180640 17 17q21 tubulin, gamma 2 protein-coding TUBG2 tubulin, gamma 2 O gamma-2-tubulin|tubulin gamma-2 chain 20121230 -9606 27177 IL36B - FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 HGNC:15564|MIM:605508|Ensembl:ENSG00000136696|HPRD:05694|Vega:OTTHUMG00000131338 2 2q14 interleukin 36, beta protein-coding IL36B interleukin 36, beta O FIL1 eta|IL-1 eta|IL-1F8 (FIL1-eta)|IL1F8 (Canonical product IL-1F8a)|Interleukin-1 Superfamily e|family of interleukin 1-eta|interleukin 1 family, member 8 (eta)|interleukin 1, eta|interleukin-1 eta|interleukin-1 family member 8|interleukin-1 homolog 2|interleukin-36 beta 20121230 -9606 27178 IL37 - FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 HGNC:15563|MIM:605510|Ensembl:ENSG00000125571|HPRD:05695|Vega:OTTHUMG00000131345 2 2q12-q14.1 interleukin 37 protein-coding IL37 interleukin 37 O FIL1 zeta|IL-1 zeta|IL-1F7b (IL-1H4, IL-1H, IL-1RP1)|IL-1X protein|IL1F7 (canonical product IL-1F7b)|interleukin 1 family member 7|interleukin 1, zeta|interleukin-1 homolog 4|interleukin-1 superfamily z|interleukin-1-related protein|interleukin-23|interleukin-37 20121230 -9606 27179 IL36A - FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 HGNC:15562|MIM:605509|Ensembl:ENSG00000136694|HPRD:16113|Vega:OTTHUMG00000153320 2 2q12-q14.1 interleukin 36, alpha protein-coding IL36A interleukin 36, alpha O FIL1 epsilon|IL-1 epsilon|IL-1F6 (FIL-1-epsilon)|interleukin 1 family, member 6 (epsilon)|interleukin 1, epsilon|interleukin-1 epsilon|interleukin-1 family member 6|interleukin-36 alpha 20121230 -9606 27180 SIGLEC9 UNQ668/PRO1302 CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9 HGNC:10878|MIM:605640|Ensembl:ENSG00000129450|HPRD:16133 19 19q13.41 sialic acid binding Ig-like lectin 9 protein-coding SIGLEC9 sialic acid binding Ig-like lectin 9 O protein FOAP-9|sialic acid-binding Ig-like lectin 9 20121230 -9606 27181 SIGLEC8 - SAF2|SIGLEC-8|SIGLEC8L HGNC:10877|MIM:605639|Ensembl:ENSG00000105366|HPRD:16132 19 19q13.33-q13.41 sialic acid binding Ig-like lectin 8 protein-coding SIGLEC8 sialic acid binding Ig-like lectin 8 O CDw329|SAF-2|sialic acid-binding Ig-like lectin 8|sialoadhesin family member 2 20121230 -9606 27183 VPS4A - SKD1|SKD1A|SKD2|VPS4|VPS4-1 HGNC:13488|MIM:609982|Ensembl:ENSG00000132612|HPRD:11676|Vega:OTTHUMG00000175589 16 16q22.1 vacuolar protein sorting 4 homolog A (S. cerevisiae) protein-coding VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae) O SKD1-homolog|hVPS4|vacuolar protein sorting factor 4A|vacuolar protein sorting-associated protein 4A|vacuolar sorting protein 4 20121230 -9606 27184 DISC2 - DISC1-AS1|DISC1OS|NCRNA00015 HGNC:2889|MIM:606271 1 1q42.1 disrupted in schizophrenia 2 (non-protein coding) miscRNA DISC2 disrupted in schizophrenia 2 (non-protein coding) O - 20121230 -9606 27185 DISC1 RP4-730B13.1 C1orf136|SCZD9 HGNC:2888|MIM:605210|Ensembl:ENSG00000162946|HPRD:05553|Vega:OTTHUMG00000037835 1 1q42.1 disrupted in schizophrenia 1 protein-coding DISC1 disrupted in schizophrenia 1 O disrupted in schizophrenia 1 protein 20121230 -9606 27187 MOCS1P1 - MOCS1P2 HGNC:7191 16 16q12.1 molybdenum cofactor synthesis 1 pseudogene 1 pseudo MOCS1P1 molybdenum cofactor synthesis 1 pseudogene 1 O - 20121230 -9606 27189 IL17C UNQ561/PRO1122 CX2|IL-17C|IL-21 HGNC:5983|MIM:604628|Ensembl:ENSG00000124391|HPRD:06863|Vega:OTTHUMG00000173241 16 16q24 interleukin 17C protein-coding IL17C interleukin 17C O cytokine CX2|interleukin-17C 20121230 -9606 27190 IL17B UNQ516/PRO1031 IL-17B|IL-20|NIRF|ZCYTO7 HGNC:5982|MIM:604627|Ensembl:ENSG00000127743|HPRD:05217|Vega:OTTHUMG00000130051 5 5q33.1 interleukin 17B protein-coding IL17B interleukin 17B O cytokine Zcyto7|cytokine-like protein ZCYTO7|interleukin 20|interleukin-17 beta|interleukin-17B|interleukin-20|neuronal interleukin-17 related factor|neuronal interleukin-17-related factor 20121230 -9606 27192 TRAPPC2P6 - SEDLP6 HGNC:10715 Y Yq11.23 trafficking protein particle complex 2 pseudogene 6 pseudo TRAPPC2P6 trafficking protein particle complex 2 pseudogene 6 O - 20090331 -9606 27193 TRAPPC2P5 - SEDLP5 HGNC:10714 Y Yq11.23 trafficking protein particle complex 2 pseudogene 5 pseudo TRAPPC2P5 trafficking protein particle complex 2 pseudogene 5 O - 20121209 -9606 27194 TRAPPC2P4 - SEDLP4 HGNC:10713 Y Yq11.23 trafficking protein particle complex 2 pseudogene 4 pseudo TRAPPC2P4 trafficking protein particle complex 2 pseudogene 4 O - 20121209 -9606 27195 TRAPPC2P3 - SEDLP3 HGNC:10712 Y Yq11.23 trafficking protein particle complex 2 pseudogene 3 pseudo TRAPPC2P3 trafficking protein particle complex 2 pseudogene 3 O - 20121209 -9606 27196 TRAPPC2P2 - SEDLP2 HGNC:10711 8 8q13.3 trafficking protein particle complex 2 pseudogene 2 pseudo TRAPPC2P2 trafficking protein particle complex 2 pseudogene 2 O - 20121230 -9606 27197 GPR82 RP11-204C16.5 - HGNC:4533|MIM:300748|Ensembl:ENSG00000171657|HPRD:06084|Vega:OTTHUMG00000021373 X Xp11.4 G protein-coupled receptor 82 protein-coding GPR82 G protein-coupled receptor 82 O probable G-protein coupled receptor 82 20121230 -9606 27198 HCAR1 FKSG80 GPR104|GPR81|HCA1|LACR1|TA-GPCR HGNC:4532|MIM:606923|Ensembl:ENSG00000196917|HPRD:06083|Vega:OTTHUMG00000168863 12 12q24.31 hydroxycarboxylic acid receptor 1 protein-coding HCAR1 hydroxycarboxylic acid receptor 1 O G protein-coupled receptor 104|G protein-coupled receptor 81|G-protein coupled receptor 104|G-protein coupled receptor 81|T-cell activation G protein-coupled receptor|hydroxy-carboxylic acid receptor 1|lactate receptor 1 20121230 -9606 27199 OXGR1 - GPR80|GPR99|P2RY15|P2Y15 HGNC:4531|MIM:606922|Ensembl:ENSG00000165621|HPRD:06082|Vega:OTTHUMG00000017236 13 13q32.1 oxoglutarate (alpha-ketoglutarate) receptor 1 protein-coding OXGR1 oxoglutarate (alpha-ketoglutarate) receptor 1 O 2-oxoglutarate receptor 1|G protein-coupled receptor 80|G protein-coupled receptor 99|G-protein coupled receptor 80|G-protein coupled receptor 99|P2Y purinoceptor 15|P2Y-like GPCR|P2Y-like nucleotide receptor|alpha-ketoglutarate receptor 1|oxoglutarate receptor 1|seven transmembrane helix receptor 20121230 -9606 27200 GPR79 - GPR79P HGNC:4529 3 3q25.32 G protein-coupled receptor 79, pseudogene pseudo GPR79 G protein-coupled receptor 79, pseudogene O - 20121230 -9606 27201 GPR78 UNQ5925/PRO19818 - HGNC:4528|MIM:606921|Ensembl:ENSG00000155269|HPRD:06081|Vega:OTTHUMG00000128483 4 4p16.1 G protein-coupled receptor 78 protein-coding GPR78 G protein-coupled receptor 78 O G-protein coupled receptor 78 20121230 -9606 27202 GPR77 - C5L2|GPF77 HGNC:4527|MIM:609949|HPRD:17072 19 19q13.33 G protein-coupled receptor 77 protein-coding GPR77 G protein-coupled receptor 77 O C5a anaphylatoxin chemotactic receptor C5L2|G protein-coupled receptor C5L2 20121230 -9606 27229 TUBGCP4 - 76P|GCP-4|GCP4|h76p|hGCP4|hGrip76 HGNC:16691|MIM:609610|Ensembl:ENSG00000137822|HPRD:10616|Vega:OTTHUMG00000176647 15 15q15 tubulin, gamma complex associated protein 4 protein-coding TUBGCP4 tubulin, gamma complex associated protein 4 O gamma tubulin ring complex protein (76p gene)|gamma-ring complex protein 76 kDa|gamma-tubulin complex component 4 20121230 -9606 27230 SERP1 - RAMP4 HGNC:10759|Ensembl:ENSG00000120742|HPRD:18037|Vega:OTTHUMG00000159769 3 3q25.1 stress-associated endoplasmic reticulum protein 1 protein-coding SERP1 stress-associated endoplasmic reticulum protein 1 O ribosome associated membrane protein 4|ribosome-attached membrane protein 4 20121230 -9606 27231 NMRK2 - ITGB1BP3|MIBP|NRK2 HGNC:17871|MIM:608705|Ensembl:ENSG00000077009|HPRD:16371 19 19p13.3 nicotinamide riboside kinase 2 protein-coding NMRK2 nicotinamide riboside kinase 2 O NRK 2|RNK 2|integrin beta 1 binding protein 3|integrin beta-1-binding protein 3|muscle integrin-binding protein|muscle-specific beta 1 integrin binding protein|nicotinic acid riboside kinase 2|nmR-K 2|ribosylnicotinamide kinase 2|ribosylnicotinic acid kinase 2 20121230 -9606 27232 GNMT - - HGNC:4415|MIM:606628|Ensembl:ENSG00000124713|HPRD:05970|Vega:OTTHUMG00000014712 6 6p12 glycine N-methyltransferase protein-coding GNMT glycine N-methyltransferase O - 20121230 -9606 27233 SULT1C4 - SULT1C|SULT1C2 HGNC:11457|MIM:608357|Ensembl:ENSG00000198075|HPRD:07461|Vega:OTTHUMG00000130958 2 2q12.3 sulfotransferase family, cytosolic, 1C, member 4 protein-coding SULT1C4 sulfotransferase family, cytosolic, 1C, member 4 O ST1C4|SULT1C#2|sulfotransferase 1C2|sulfotransferase 1C4|sulfotransferase family, cytosolic, 1C, member 2|sulfotransferase family, cytosolic, 1C, member C2 20121230 -9606 27235 COQ2 - CL640|COQ10D1 HGNC:25223|MIM:609825|Ensembl:ENSG00000173085|HPRD:13062|Vega:OTTHUMG00000160940 4 4q21.23 coenzyme Q2 homolog, prenyltransferase (yeast) protein-coding COQ2 coenzyme Q2 homolog, prenyltransferase (yeast) O 4-hydroxybenzoate polyprenyltransferase, mitochondrial|PHB:polyprenyltransferase|para-hydroxybenzoate-polyprenyltransferase, mitochondrial 20121230 -9606 27236 ARFIP1 - HSU52521 HGNC:21496|MIM:605928|Ensembl:ENSG00000164144|HPRD:09331|Vega:OTTHUMG00000161468 4 4q31.3 ADP-ribosylation factor interacting protein 1 protein-coding ARFIP1 ADP-ribosylation factor interacting protein 1 O ADP-ribosylation factor-interacting protein 1|arfaptin 1|arfaptin-1 20121230 -9606 27237 ARHGEF16 RP11-168F9.1 GEF16|NBR HGNC:15515|Ensembl:ENSG00000130762|HPRD:12478|Vega:OTTHUMG00000000625 1 1p36.3 Rho guanine nucleotide exchange factor (GEF) 16 protein-coding ARHGEF16 Rho guanine nucleotide exchange factor (GEF) 16 O Rho guanine exchange factor (GEF) 16|ephexin-4|rho guanine nucleotide exchange factor 16 20121230 -9606 27238 GPKOW - GPATC5|GPATCH5|Spp2|T54 HGNC:30677|Ensembl:ENSG00000068394|HPRD:06737|Vega:OTTHUMG00000021511 X Xp11.23 G patch domain and KOW motifs protein-coding GPKOW G patch domain and KOW motifs O G patch domain and KOW motifs-containing protein|protein MOS2 homolog 20121230 -9606 27239 GPR162 - A-2|GRCA HGNC:16693|Ensembl:ENSG00000250510|HPRD:13608|Vega:OTTHUMG00000168368 12 12p13 G protein-coupled receptor 162 protein-coding GPR162 G protein-coupled receptor 162 O gene rich cluster, A|gene-rich cluster gene A protein|probable G-protein coupled receptor 162 20121230 -9606 27240 SIT1 - RP11-331F9.5|SIT|SIT-R HGNC:17710|MIM:604964|Ensembl:ENSG00000137078|HPRD:05394|Vega:OTTHUMG00000019867 9 9p13-p12 signaling threshold regulating transmembrane adaptor 1 protein-coding SIT1 signaling threshold regulating transmembrane adaptor 1 O SHP-2 interacting transmembrane adaptor protein|SHP2 interacting transmembrane adaptor|SHP2-interacting transmembrane adapter protein|SHP2-interacting transmembrane adaptor protein|gp30/40|signaling threshold-regulating transmembrane adapter 1|suppression inducing transmembrane adaptor 1|suppression-inducing transmembrane adapter 1 20121230 -9606 27241 BBS9 - B1|C18|D1|PTHB1 HGNC:30000|MIM:607968|Ensembl:ENSG00000122507|HPRD:16262|Vega:OTTHUMG00000128659 7 7p14 Bardet-Biedl syndrome 9 protein-coding BBS9 Bardet-Biedl syndrome 9 O PTH-responsive osteosarcoma B1 protein|bardet-Biedl syndrome 9 protein|parathyroid hormone-responsive B1 gene protein|protein PTHB1 20121230 -9606 27242 TNFRSF21 UNQ437/PRO868 BM-018|CD358|DR6 HGNC:13469|MIM:605732|Ensembl:ENSG00000146072|HPRD:05759|Vega:OTTHUMG00000014796 6 6p21.1 tumor necrosis factor receptor superfamily, member 21 protein-coding TNFRSF21 tumor necrosis factor receptor superfamily, member 21 O TNFR-related death receptor 6|death receptor 6|tumor necrosis factor receptor superfamily member 21 20121230 -9606 27243 CHMP2A - BC-2|BC2|CHMP2|VPS2|VPS2A HGNC:30216|MIM:610893|Ensembl:ENSG00000130724|HPRD:12520 19 19q charged multivesicular body protein 2A protein-coding CHMP2A charged multivesicular body protein 2A O VPS2 homolog A|charged multivesicular body protein 2a|chromatin modifying protein 2A|chromatin-modifying protein 2a|hVps2-1|putative breast adenocarcinoma marker (32kD)|putative breast adenocarcinoma marker BC-2|vacuolar protein sorting-associated protein 2-1|vps2-1 20121230 -9606 27244 SESN1 RP11-787I22.2 PA26|SEST1 HGNC:21595|MIM:606103|Ensembl:ENSG00000080546|HPRD:07310|Vega:OTTHUMG00000015338 6 6q21 sestrin 1 protein-coding SESN1 sestrin 1 O p53 activated gene 26|p53 regulated PA26 nuclear protein|sestrin-1 20121230 -9606 27245 AHDC1 - CL23945|DJ159A19.3|RP1-159A19.1 HGNC:25230|Ensembl:ENSG00000126705|HPRD:10885|Vega:OTTHUMG00000003398 1 1p36.13 AT hook, DNA binding motif, containing 1 protein-coding AHDC1 AT hook, DNA binding motif, containing 1 O AT-hook DNA-binding motif-containing protein 1|a.T hook DNA-binding motif-containing protein 1 20121230 -9606 27246 RNF115 - BCA2|ZNF364 HGNC:18154|Ensembl:ENSG00000121848|HPRD:18328|Vega:OTTHUMG00000013758 1 1q21.1 ring finger protein 115 protein-coding RNF115 ring finger protein 115 O E3 ubiquitin-protein ligase RNF115|rabring 7|zinc finger protein 364 20121230 -9606 27247 NFU1 CGI-33 HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU HGNC:16287|MIM:608100|Ensembl:ENSG00000169599|HPRD:12163|Vega:OTTHUMG00000152668 2 2p15-p13 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) protein-coding NFU1 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) O HIRA-interacting protein 5|NFU1 iron-sulfur cluster scaffold homolog, mitochondrial|NifU-like C-terminal domain containing|iron-sulfur cluster scaffold protein 20121230 -9606 27248 ERLEC1 UNQ1878/PRO4321 C2orf30|CIM|CL24936|CL25084|XTP3-B|XTP3TPB HGNC:25222|MIM:611229|Ensembl:ENSG00000068912|HPRD:10310|Vega:OTTHUMG00000129281 2 2p16.2 endoplasmic reticulum lectin 1 protein-coding ERLEC1 endoplasmic reticulum lectin 1 O ER lectin|XTP3-transactivated gene B protein|XTP3-transactivated protein B|cancer invasion and metastasis-related|erlectin 1 20121230 -9606 27249 MMADHC HSPC161 C2orf25|CL25022|cblD HGNC:25221|MIM:611935|Ensembl:ENSG00000168288|HPRD:10781|Vega:OTTHUMG00000155558 2 2q23.2 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding MMADHC methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria O methylmalonic aciduria and homocystinuria type D protein, mitochondrial|protein C2orf25, mitochondrial 20121230 -9606 27250 PDCD4 RP11-348N5.4 H731 HGNC:8763|MIM:608610|Ensembl:ENSG00000150593|HPRD:10549|Vega:OTTHUMG00000019048 10 10q24 programmed cell death 4 (neoplastic transformation inhibitor) protein-coding PDCD4 programmed cell death 4 (neoplastic transformation inhibitor) O neoplastic transformation inhibitor protein|nuclear antigen H731|programmed cell death protein 4|protein 197/15a 20121230 -9606 27251 HR44 - - MIM:605959 - - Hr44 antigen protein-coding - - - - 20120710 -9606 27252 KLHL20 - KHLHX|KLEIP|KLHLX|RP3-383J4.3 HGNC:25056|Ensembl:ENSG00000076321|HPRD:13918|Vega:OTTHUMG00000040548 1 1q25.1 kelch-like 20 (Drosophila) protein-coding KLHL20 kelch-like 20 (Drosophila) O Kelch motif containing protein|kelch-like ECT2 interacting protein|kelch-like ECT2-interacting protein|kelch-like protein 20|kelch-like protein X 20121230 -9606 27253 PCDH17 - PCDH68|PCH68 HGNC:14267|MIM:611760|Ensembl:ENSG00000118946|Vega:OTTHUMG00000016992 13 13q21.1 protocadherin 17 protein-coding PCDH17 protocadherin 17 O protocadherin 68|protocadherin-17|protocadherin-68 20121230 -9606 27254 CSDC2 - PIPPIN|dJ347H13.2 HGNC:30359|Ensembl:ENSG00000172346|HPRD:15140|Vega:OTTHUMG00000150967 22 22q13.2 cold shock domain containing C2, RNA binding protein-coding CSDC2 cold shock domain containing C2, RNA binding O RNA-binding protein pippin|cold shock domain-containing protein C2 20121230 -9606 27255 CNTN6 - NB3 HGNC:2176|MIM:607220|Ensembl:ENSG00000134115|HPRD:06242|Vega:OTTHUMG00000119030 3 3p26-p25 contactin 6 protein-coding CNTN6 contactin 6 O contactin-6|neural adhesion molecule|neural recognition molecule NB-3 20121230 -9606 27257 LSM1 - CASM|YJL124C HGNC:20472|MIM:607281|Ensembl:ENSG00000175324|HPRD:06281|Vega:OTTHUMG00000164051 8 8p11.2 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding LSM1 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) O U6 snRNA-associated Sm-like protein LSm1|cancer-associated Sm-like protein|small nuclear ribonuclear CaSm 20121230 -9606 27258 LSM3 MDS017 SMX4|USS2|YLR438C HGNC:17874|MIM:607283|Ensembl:ENSG00000170860|HPRD:06283|Vega:OTTHUMG00000129838 3 3p25.1 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) O U6 snRNA-associated Sm-like protein LSm3 20121230 -9606 27259 HPLH1 - FHL1|HLH1 HGNC:23824|MIM:267700 9 9q21.3-q22 hemophagocytic lymphohistiocytosis 1 unknown HPLH1 hemophagocytic lymphohistiocytosis 1 O - 20120622 -9606 27283 TINAG RP11-124I4.1 TIN-AG HGNC:14599|MIM:606749|Ensembl:ENSG00000137251|HPRD:09483|Vega:OTTHUMG00000014893 6 6p12.1 tubulointerstitial nephritis antigen protein-coding TINAG tubulointerstitial nephritis antigen O - 20121230 -9606 27284 SULT1B1 - ST1B1|ST1B2|SULT1B2 HGNC:17845|MIM:608436|Ensembl:ENSG00000173597|HPRD:07088|Vega:OTTHUMG00000129407 4 4q13.3 sulfotransferase family, cytosolic, 1B, member 1 protein-coding SULT1B1 sulfotransferase family, cytosolic, 1B, member 1 O sulfotransferase 1B1|sulfotransferase 1B2|sulfotransferase family cytosolic 1B member 1|thyroid hormone sulfotransferase 20121230 -9606 27285 TEKT2 - TEKTB1|TEKTIN-T|h-tektin-t HGNC:11725|MIM:608953|Ensembl:ENSG00000092850|HPRD:16410|Vega:OTTHUMG00000007629 1 1p34.3 tektin 2 (testicular) protein-coding TEKT2 tektin 2 (testicular) O tektin-2|tektin-B1|testicular tektin B1-like protein 20121230 -9606 27286 SRPX2 RP11-524D16__A.1 BPP|CBPS|PMGX|RESDX|SRPUL HGNC:30668|MIM:300642|Ensembl:ENSG00000102359|HPRD:06726|Vega:OTTHUMG00000022003 X Xq21.33-q23 sushi-repeat containing protein, X-linked 2 protein-coding SRPX2 sushi-repeat containing protein, X-linked 2 O sushi repeat-containing protein SRPX2|sushi-repeat protein up-regulated in leukemia|sushi-repeat-containing protein, X-linked 2 20121230 -9606 27287 VENTX - HPX42B|NA88A|VENTX2 HGNC:13639|MIM:607158|Ensembl:ENSG00000151650|HPRD:06197|Vega:OTTHUMG00000019307 10 10q26.3 VENT homeobox protein-coding VENTX VENT homeobox O VENT homeobox homolog|VENT-like homeobox 2|VENT-like homeobox protein 2|hemopoietic progenitor homeobox protein VENTX2|homeobox protein VENTX 20121230 -9606 27288 RBMXL2 - HNRNPG-T|HNRNPGT|HNRPGT HGNC:17886|MIM:605444|Ensembl:ENSG00000170748|HPRD:05672|Vega:OTTHUMG00000165509 11 11p15 RNA binding motif protein, X-linked-like 2 protein-coding RBMXL2 RNA binding motif protein, X-linked-like 2 O RNA-binding motif protein, X-linked-like-2|heterogeneous nuclear ribonucleoprotein G T|hnRNP G-T|testes specific heterogenous nuclear ribonucleoprotein G T|testes-specific heterogenous nuclear ribonucleoprotein G-T|testis-specific heterogeneous nuclear ribonucleoprotein G-T 20121230 -9606 27289 RND1 - ARHS|RHO6|RHOS HGNC:18314|MIM:609038|Ensembl:ENSG00000172602|HPRD:12357|Vega:OTTHUMG00000170400 12 12q12 Rho family GTPase 1 protein-coding RND1 Rho family GTPase 1 O GTP-binding protein|ras homolog gene family, member S|rho-related GTP-binding protein Rho6 20121230 -9606 27290 SPINK4 - PEC-60|PEC60 HGNC:16646|MIM:613929|Ensembl:ENSG00000122711|HPRD:11598|Vega:OTTHUMG00000019762 9 9p13.3 serine peptidase inhibitor, Kazal type 4 protein-coding SPINK4 serine peptidase inhibitor, Kazal type 4 O gastrointestinal peptide|peptide PEC-60 homolog|serine protease inhibitor Kazal-type 4|serine protease inhibitor, Kazal type 4 20121230 -9606 27291 R3HCC1L - C10orf28|GIDRP86|GIDRP88|PSORT HGNC:23512|Ensembl:ENSG00000166024|HPRD:12568|Vega:OTTHUMG00000018873 10 10q24.2 R3H domain and coiled-coil containing 1-like protein-coding R3HCC1L R3H domain and coiled-coil containing 1-like O R3H and coiled-coil domain-containing protein 1-like|growth inhibition and differentiation related protein 86|growth inhibition and differentiation-related protein 88|putative mitochondrial space protein 32.1 20121230 -9606 27292 DIMT1 HUSSY-05 DIM1|DIMT1L|HSA9761|HUSSY5 HGNC:30217|MIM:612499|Ensembl:ENSG00000086189|HPRD:13676|Vega:OTTHUMG00000131223 5 5q12.1 DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) protein-coding DIMT1 DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) O 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase|18S rRNA dimethylase|S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase|dimethyladenosine transferase|probable 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase|probable 18S rRNA dimethylase|probable S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase|probable dimethyladenosine transferase 20121230 -9606 27293 SMPDL3B RP11-460I13.1 ASML3B HGNC:21416|Ensembl:ENSG00000130768|HPRD:15405|Vega:OTTHUMG00000003910 1 1p35.3 sphingomyelin phosphodiesterase, acid-like 3B protein-coding SMPDL3B sphingomyelin phosphodiesterase, acid-like 3B O ASM-like phosphodiesterase 3b|acid sphingomyelinase-like phosphodiesterase 3b 20121230 -9606 27294 DHDH - 2DD|HUM2DD HGNC:17887|MIM:606377|Ensembl:ENSG00000104808|HPRD:08399|Vega:OTTHUMG00000165029 19 19q13.3 dihydrodiol dehydrogenase (dimeric) protein-coding DHDH dihydrodiol dehydrogenase (dimeric) O 3-deoxyglucosone reductase|D-xylose 1-dehydrogenase|D-xylose-NADP dehydrogenase|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase 20121230 -9606 27295 PDLIM3 - ALP HGNC:20767|MIM:605889|Ensembl:ENSG00000154553|HPRD:08388|Vega:OTTHUMG00000160412 4 4q35 PDZ and LIM domain 3 protein-coding PDLIM3 PDZ and LIM domain 3 O PDZ and LIM domain protein 3|alpha-actinin-2-associated LIM protein|enigma homolog 20121230 -9606 27296 TP53TG5 - C20orf10|CLG01 HGNC:15856|Ensembl:ENSG00000124251|HPRD:12733|Vega:OTTHUMG00000032582 20 20q13.12 TP53 target 5 protein-coding TP53TG5 TP53 target 5 O TP53-inducible gene 5 protein|TP53-target gene 5 protein 20121230 -9606 27297 CRCP - CGRP-RCP|CGRPRCP|RCP|RCP9 HGNC:17888|MIM:606121|Ensembl:ENSG00000241258|HPRD:12089|Vega:OTTHUMG00000129519 7 7q11.21 CGRP receptor component protein-coding CRCP CGRP receptor component O CGRP-receptor component protein|DNA-directed RNA polymerase III subunit RPC9|RNA polymerase III subunit C9|calcitonin gene-related peptide-receptor component protein 20121230 -9606 27299 ADAMDEC1 - M12.219 HGNC:16299|MIM:606393|Ensembl:ENSG00000134028|HPRD:07070|Vega:OTTHUMG00000097858 8 8p21.2 ADAM-like, decysin 1 protein-coding ADAMDEC1 ADAM-like, decysin 1 O ADAM DEC1|ADAM-like protein decysin-1|a disintegrin and metalloproteinase domain-like protein decysin-1|decysin|disintegrin protease 20121230 -9606 27300 ZNF544 - - HGNC:16759|Ensembl:ENSG00000198131|HPRD:15830 19 19q13.43 zinc finger protein 544 protein-coding ZNF544 zinc finger protein 544 O - 20121230 -9606 27301 APEX2 RP5-884M20.3 APE2|APEXL2|XTH2 HGNC:17889|MIM:300773|Ensembl:ENSG00000169188|HPRD:06442|Vega:OTTHUMG00000021642 X Xp11.21 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 protein-coding APEX2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 O AP endonuclease 2|AP endonuclease XTH2|DNA-(apurinic or apyrimidinic site) lyase 2|apurinic/apyrimidinic endonuclease-like 2 20121230 -9606 27302 BMP10 - - HGNC:20869|MIM:608748|Ensembl:ENSG00000163217|HPRD:09788|Vega:OTTHUMG00000129573 2 2p13.3 bone morphogenetic protein 10 protein-coding BMP10 bone morphogenetic protein 10 O - 20121230 -9606 27303 RBMS3 - - HGNC:13427|MIM:605786|Ensembl:ENSG00000144642|HPRD:16155|Vega:OTTHUMG00000155699 3 3p24-p23 RNA binding motif, single stranded interacting protein 3 protein-coding RBMS3 RNA binding motif, single stranded interacting protein 3 O RNA-binding motif, single-stranded-interacting protein 3|RNA-binding protein 20121230 -9606 27304 MOCS3 - UBA4 HGNC:15765|MIM:609277|Ensembl:ENSG00000124217|HPRD:10092|Vega:OTTHUMG00000032741 20 20q13.13 molybdenum cofactor synthesis 3 protein-coding MOCS3 molybdenum cofactor synthesis 3 O MPT synthase sulfurylase|UBA4, ubiquitin-activating enzyme E1 homolog|adenylyltransferase and sulfurtransferase MOCS3|molybdenum cofactor synthesis protein 3|molybdopterin synthase sulfurylase|ubiquitin-like modifier activating enzyme 4 20121230 -9606 27306 HPGDS - GSTS|GSTS1-1|PGD2|PGDS HGNC:17890|MIM:602598|Ensembl:ENSG00000163106|HPRD:04001|Vega:OTTHUMG00000130974 4 4q22.3 hematopoietic prostaglandin D synthase protein-coding HPGDS hematopoietic prostaglandin D synthase O GST class-sigma|glutathione S-transferase sigma|glutathione-dependent PGD synthase|glutathione-dependent PGD synthetase|glutathione-requiring prostaglandin D synthase|hematopoietic prostaglandin D2 synthase|prostaglandin-H2 D-isomerase 20121230 -9606 27309 ZNF330 - HSA6591|NOA36 HGNC:15462|MIM:609550|Ensembl:ENSG00000109445|HPRD:15775|Vega:OTTHUMG00000133413 4 4q31.21 zinc finger protein 330 protein-coding ZNF330 zinc finger protein 330 O nucleolar autoantigen 36|nucleolar cysteine-rich protein|zinc finger autoantigen 330 20121230 -9606 27314 RAB30 - - HGNC:9770|MIM:605693|Ensembl:ENSG00000137502|HPRD:05750|Vega:OTTHUMG00000166973 11 11q12-q14 RAB30, member RAS oncogene family protein-coding RAB30 RAB30, member RAS oncogene family O ras-related protein Rab-30 20121230 -9606 27315 PGAP2 - CWH43-N|FRAG1 HGNC:17893|Ensembl:ENSG00000148985|HPRD:17016|Vega:OTTHUMG00000012238 11 11p15.5 post-GPI attachment to proteins 2 protein-coding PGAP2 post-GPI attachment to proteins 2 O FGF receptor activating protein 1|FGF receptor-activating protein 1|cell wall biogenesis 43 N-terminal homolog|post-GPI attachment to proteins factor 2 20121230 -9606 27316 RBMX RP11-1114A5.1 HNRPG|RBMXP1|RBMXRT|RNMX|hnRNP-G HGNC:9910|MIM:300199|Ensembl:ENSG00000147274|HPRD:02186|Vega:OTTHUMG00000022517 X Xq26.3 RNA binding motif protein, X-linked protein-coding RBMX RNA binding motif protein, X-linked O RNA binding motif protein, X chromosome|RNA-binding motif protein, X chromosome|glycoprotein p43|heterogeneous nuclear ribonucleoprotein G|hnRNP G 20121230 -9606 27319 BHLHE22 - BHLHB5|Beta3|CAGL85|TNRC20 HGNC:11963|MIM:613483|Ensembl:ENSG00000180828|HPRD:16551|Vega:OTTHUMG00000164386 8 8q13 basic helix-loop-helix family, member e22 protein-coding BHLHE22 basic helix-loop-helix family, member e22 O basic helix-loop-helix domain containing, class B, 5|class B basic helix-loop-helix protein 5|class E basic helix-loop-helix protein 22|trinucleotide repeat containing 20|trinucleotide repeat-containing gene 20 protein 20121230 -9606 27320 TNRC18P2 - TNRC18|TNRC18B HGNC:34014 7 7q11.21 trinucleotide repeat containing 18 pseudogene 2 pseudo TNRC18P2 trinucleotide repeat containing 18 pseudogene 2 O - 20121230 -9606 27321 TNRC17 - CAGL234 HGNC:11961 2 2q21.3 trinucleotide repeat containing 17 unknown TNRC17 trinucleotide repeat containing 17 O - 20120508 -9606 27324 TOX3 - CAGF9|TNRC9 HGNC:11972|MIM:611416|Ensembl:ENSG00000103460|Vega:OTTHUMG00000173222 16 16q12.1 TOX high mobility group box family member 3 protein-coding TOX3 TOX high mobility group box family member 3 O CAG trinucleotide repeat-containing gene F9 protein|trinucleotide repeat containing 9|trinucleotide repeat-containing gene 9 protein 20121230 -9606 27327 TNRC6A - CAGH26|GW1|GW182|TNRC6 HGNC:11969|MIM:610739|Ensembl:ENSG00000090905|HPRD:11640|Vega:OTTHUMG00000096999 16 16p11.2 trinucleotide repeat containing 6A protein-coding TNRC6A trinucleotide repeat containing 6A O CAG repeat protein 26|EDIE|EMSY interactor protein|GW182 autoantigen|glycine-tryptophan protein of 182 kDa|trinucleotide repeat-containing gene 6A protein 20121230 -9606 27328 PCDH11X RP13-138P15.1 PCDH-X|PCDH11|PCDHX HGNC:8656|MIM:300246|Ensembl:ENSG00000102290|HPRD:02215|Vega:OTTHUMG00000021965 X Xq21.3 protocadherin 11 X-linked protein-coding PCDH11X protocadherin 11 X-linked O protocadherin 11X|protocadherin on the X chromosome|protocadherin-11 X-linked|protocadherin-S 20121230 -9606 27329 ANGPTL3 UNQ153/PRO179 ANGPT5|FHBL2 HGNC:491|MIM:604774|Ensembl:ENSG00000132855|HPRD:10381|Vega:OTTHUMG00000009146 1 1p31.3 angiopoietin-like 3 protein-coding ANGPTL3 angiopoietin-like 3 O ANG-5|angiopoietin 5|angiopoietin-related protein 3 20121230 -9606 27330 RPS6KA6 - PP90RSK4|RSK4 HGNC:10435|MIM:300303|Ensembl:ENSG00000072133|HPRD:02250|Vega:OTTHUMG00000021923 X Xq21 ribosomal protein S6 kinase, 90kDa, polypeptide 6 protein-coding RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6 O 90 kDa ribosomal protein S6 kinase 6|RSK-4|S6K-alpha 6|S6K-alpha-6|p90-RSK 6|p90RSK6|ribosomal S6 kinase 4|ribosomal protein S6 kinase alpha-6 20121230 -9606 27332 ZNF638 - NP220|ZFML|Zfp638 HGNC:17894|MIM:614349|Ensembl:ENSG00000075292|HPRD:11736|Vega:OTTHUMG00000129735 2 2p13.1 zinc finger protein 638 protein-coding ZNF638 zinc finger protein 638 O CTCL tumor antigen se33-1|CTCL-associated antigen se33-1|NP220 nuclear protein|cutaneous T-cell lymphoma-associated antigen se33-1|nuclear protein 220|zinc finger matrin-like protein 20121230 -9606 27333 GOLIM4 - GIMPC|GOLPH4|GPP130|P138 HGNC:15448|MIM:606805|Ensembl:ENSG00000173905|HPRD:08429|Vega:OTTHUMG00000158554 3 3q26.2 golgi integral membrane protein 4 protein-coding GOLIM4 golgi integral membrane protein 4 O 130 kDa golgi-localized phosphoprotein|Golgi integral membrane protein 4|cis Golgi-localized calcium-binding protein|golgi integral membrane protein, cis|golgi phosphoprotein 4|golgi phosphoprotein of 130 kDa|golgi-localized phosphoprotein of 130 kDa|type II Golgi membrane protein 20121230 -9606 27334 P2RY10 RP3-333E23.1 P2Y10 HGNC:19906|MIM:300529|Ensembl:ENSG00000078589|HPRD:06670|Vega:OTTHUMG00000021896 X Xq21.1 purinergic receptor P2Y, G-protein coupled, 10 protein-coding P2RY10 purinergic receptor P2Y, G-protein coupled, 10 O G-protein coupled purinergic receptor P2Y10|P2Y purinoceptor 10|P2Y-like receptor|putative P2Y purinoceptor 10 20121230 -9606 27335 EIF3K ARG134 EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001 HGNC:24656|MIM:609596|Ensembl:ENSG00000178982|HPRD:11740|Vega:OTTHUMG00000180865 19 19q13.2 eukaryotic translation initiation factor 3, subunit K protein-coding EIF3K eukaryotic translation initiation factor 3, subunit K O eIF-3 p25|eIF-3 p28|eukaryotic translation initiation factor 3 subunit 12|eukaryotic translation initiation factor 3 subunit K|eukaryotic translation initiation factor 3, subunit 12|muscle specific|muscle-specific gene M9 protein 20121230 -9606 27336 HTATSF1 RP1-196E23.2 TAT-SF1|dJ196E23.2 HGNC:5276|MIM:300346|Ensembl:ENSG00000102241|HPRD:02282|Vega:OTTHUMG00000022510 X Xq26.3 HIV-1 Tat specific factor 1 protein-coding HTATSF1 HIV-1 Tat specific factor 1 O HIV TAT specific factor 1|HIV Tat-specific factor 1|cofactor required for Tat activation of HIV-1 transcription 20121230 -9606 27338 UBE2S OK/SW-cl.73 E2-EPF|E2EPF|EPF5 HGNC:17895|MIM:610309|Ensembl:ENSG00000108106|HPRD:15603|Vega:OTTHUMG00000180811 19 19q13.43 ubiquitin-conjugating enzyme E2S protein-coding UBE2S ubiquitin-conjugating enzyme E2S O E2-EPF5|ubiquitin carrier protein S|ubiquitin-conjugating enzyme E2 S|ubiquitin-conjugating enzyme E2-24 kD|ubiquitin-conjugating enzyme E2-24 kDa|ubiquitin-conjugating enzyme E2-EPF5|ubiquitin-protein ligase S 20121230 -9606 27339 PRPF19 - NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 HGNC:17896|MIM:608330|Ensembl:ENSG00000110107|HPRD:12214|Vega:OTTHUMG00000167798 11 11q12.2 PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) protein-coding PRPF19 PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) O PRP19/PSO4 homolog|nuclear matrix protein 200|nuclear matrix protein NMP200 related to splicing factor PRP19|pre-mRNA-processing factor 19|senescence evasion factor 20121230 -9606 27340 UTP20 - DRIM HGNC:17897|MIM:612822|Ensembl:ENSG00000120800|HPRD:09928|Vega:OTTHUMG00000170270 12 12q23 UTP20, small subunit (SSU) processome component, homolog (yeast) protein-coding UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) O NNP73|down regulated in metastasis|down-regulated in metastasis protein|novel nucleolar protein 73|small subunit processome component 20 homolog 20121230 -9606 27341 RRP7A CTA-126B4.5 BK126B4.3|CGI-96 HGNC:24286|Ensembl:ENSG00000189306|HPRD:13043|Vega:OTTHUMG00000150891 22 22q13.2 ribosomal RNA processing 7 homolog A (S. cerevisiae) protein-coding RRP7A ribosomal RNA processing 7 homolog A (S. cerevisiae) O CTA-126B4.5|gastric cancer antigen Zg14|ribosomal RNA-processing protein 7 homolog A 20121230 -9606 27342 RABGEF1 - RABEX5|rabex-5 HGNC:17676|MIM:609700|Ensembl:ENSG00000154710|Ensembl:ENSG00000243335|Vega:OTTHUMG00000129547 7 7q11.21 RAB guanine nucleotide exchange factor (GEF) 1 protein-coding RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 O RAP1|rab5 GDP/GTP exchange factor|rabaptin-5-associated exchange factor for Rab5 20121230 -9606 27343 POLL RP11-529I10.1 BETAN|POLKAPPA HGNC:9184|MIM:606343|Ensembl:ENSG00000166169|HPRD:09394|Vega:OTTHUMG00000018933 10 10q23 polymerase (DNA directed), lambda protein-coding POLL polymerase (DNA directed), lambda O DNA polymerase beta-2|DNA polymerase beta-N|DNA polymerase kappa|DNA polymerase lambda 20121230 -9606 27344 PCSK1N - PROSAAS|SAAS HGNC:17301|MIM:300399|Ensembl:ENSG00000102109|HPRD:02320|Vega:OTTHUMG00000034502 X Xp11.23 proprotein convertase subtilisin/kexin type 1 inhibitor protein-coding PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor O granin-like neuroendocrine peptide|pro-SAAS|proSAAS|proprotein convertase 1 inhibitor 20121230 -9606 27345 KCNMB4 - - HGNC:6289|MIM:605223|Ensembl:ENSG00000135643|HPRD:05564|Vega:OTTHUMG00000167586 12 12q potassium large conductance calcium-activated channel, subfamily M, beta member 4 protein-coding KCNMB4 potassium large conductance calcium-activated channel, subfamily M, beta member 4 O BK channel subunit beta-4|BKbeta4|calcium-activated potassium channel subunit beta-4|calcium-activated potassium channel, subfamily M subunit beta-4|charybdotoxin receptor subunit beta-4|hbeta4|k(VCA)beta-4|large conductance calcium-dependent potassium ion channel beta 4 subunit|maxi K channel subunit beta-4|slo-beta-4 20121230 -9606 27346 TMEM97 - MAC30 HGNC:28106|MIM:612912|Ensembl:ENSG00000109084|HPRD:14343|Vega:OTTHUMG00000132497 17 17q11.2 transmembrane protein 97 protein-coding TMEM97 transmembrane protein 97 O - 20121230 -9606 27347 STK39 - DCHT|PASK|SPAK HGNC:17717|MIM:607648|Ensembl:ENSG00000198648|HPRD:09627|Vega:OTTHUMG00000133745 2 2q24.3 serine threonine kinase 39 protein-coding STK39 serine threonine kinase 39 O STE20/SPS1 homolog|STE20/SPS1-related proline-alanine-rich protein kinase|Ste20-like protein kinase|proline-alanine-rich STE20-related kinase|serine threonine kinase 39 (STE20/SPS1 homolog, yeast)|serine/threonine-protein kinase 39|small intestine SPAK-like kinase|ste-20-related kinase 20121230 -9606 27348 TOR1B FKSG18 DQ1 HGNC:11995|MIM:608050|Ensembl:ENSG00000136816|HPRD:16270|Vega:OTTHUMG00000020795 9 9q34 torsin family 1, member B (torsin B) protein-coding TOR1B torsin family 1, member B (torsin B) O torsin family 1 member B|torsin-1B 20121230 -9606 27349 MCAT AL022237.1 FASN2C|MCT|MT|NET62|fabD HGNC:29622|MIM:614479|Ensembl:ENSG00000100294|HPRD:14786|Vega:OTTHUMG00000150704 22 22q13.31 malonyl CoA:ACP acyltransferase (mitochondrial) protein-coding MCAT malonyl CoA:ACP acyltransferase (mitochondrial) O [Acyl-carrier-protein] malonyltransferase|malonyl-CoA-acyl carrier protein transacylase, mitochondrial|malonyl-CoA:acyl carrier protein transacylase, mitochondrial|mitochondrial malonyl CoA:ACP acyltransferase|mitochondrial malonyltransferase 20121230 -9606 27350 APOBEC3C - A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3 HGNC:17353|MIM:607750|Ensembl:ENSG00000244509|HPRD:09671|Vega:OTTHUMG00000151087 22 22q13.1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C protein-coding APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C O phorbolin I|probable DNA dC->dU-editing enzyme APOBEC-3C 20121230 -9606 27351 DESI1 - D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|PPPDE2 HGNC:24577|MIM:614637|Ensembl:ENSG00000100418|HPRD:18590|Vega:OTTHUMG00000044632 22 22q13.2 desumoylating isopeptidase 1 protein-coding DESI1 desumoylating isopeptidase 1 O PPPDE peptidase domain containing 2|PPPDE peptidase domain-containing protein 2|desumoylating isopeptidase 2|family with sequence similarity 152, member B 20121230 -9606 27352 SGSM3 RP5-1042K10.9 MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5 HGNC:25228|MIM:610440|Ensembl:ENSG00000100359|HPRD:15285|Vega:OTTHUMG00000151141 22 22q13.1-q13.2 small G protein signaling modulator 3 protein-coding SGSM3 small G protein signaling modulator 3 O RUN and SH3 containing 3|RUN and TBC1 domain containing 3|RUN and TBC1 domain-containing protein 3|merlin binding protein|merlin-associated protein|rab-GTPase-activating protein-like protein|rabGAPLP|small G protein signaling modulator 3 protein 20121230 -9606 27429 HTRA2 - OMI|PARK13|PRSS25 HGNC:14348|MIM:606441|Ensembl:ENSG00000115317|HPRD:05919|Vega:OTTHUMG00000129957 2 2p12 HtrA serine peptidase 2 protein-coding HTRA2 HtrA serine peptidase 2 O HtrA-like serine protease|Omi stress-regulated endoprotease|high temperature requirement protein A2|protease, serine, 25|serine protease 25|serine protease HTRA2, mitochondrial|serine proteinase OMI 20121230 -9606 27430 MAT2B MSTP045 MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR HGNC:6905|MIM:605527|Ensembl:ENSG00000038274|HPRD:05701|Vega:OTTHUMG00000130379 5 5q34-q35 methionine adenosyltransferase II, beta protein-coding MAT2B methionine adenosyltransferase II, beta O MAT II beta|beta regulatory subunit of methionine adenosyltransferase|dTDP-4-keto-6-deoxy-D-glucose 4-reductase|methionine adenosyltransferase 2 subunit beta|putative dTDP-4-keto-6-deoxy-D-glucose 4-reductase|putative protein product of Nbla02999|short chain dehydrogenase/reductase family 23E, member 1 20121230 -9606 27433 TOR2A RP11-56D16.7 TORP1 HGNC:11996|MIM:608052|Ensembl:ENSG00000160404|HPRD:16271|Vega:OTTHUMG00000020706 9 9q34.11 torsin family 2, member A protein-coding TOR2A torsin family 2, member A O prosalusin|torsin-2A|torsin-related protein 1 20121230 -9606 27434 POLM - Pol Mu|Tdt-N HGNC:9185|MIM:606344|Ensembl:ENSG00000122678|HPRD:16208|Vega:OTTHUMG00000155353 7 7p13 polymerase (DNA directed), mu protein-coding POLM polymerase (DNA directed), mu O DNA polymerase mu|DNA-directed DNA/RNA polymerase mu|Pol iota|polymerase (DNA-directed), mu|terminal transferase 20121230 -9606 27436 EML4 - C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 HGNC:1316|MIM:607442|Ensembl:ENSG00000143924|HPRD:06310|Vega:OTTHUMG00000128603 2 2p21 echinoderm microtubule associated protein like 4 protein-coding EML4 echinoderm microtubule associated protein like 4 O echinoderm microtubule-associated protein-like 4|restrictedly overexpressed proliferation-associated protein|ropp 120 20121230 -9606 27437 HSFY1P1 - CECR8|HSFYL1|HSFYP1|NCRNA00016 HGNC:1846 22 - heat shock transcription factor, Y-linked 1 pseudogene 1 pseudo HSFY1P1 heat shock transcription factor, Y-linked 1 pseudogene 1 O - 20121230 -9606 27439 CECR6 - - HGNC:1844|Ensembl:ENSG00000183307|HPRD:16704|Vega:OTTHUMG00000030471 22 - cat eye syndrome chromosome region, candidate 6 protein-coding CECR6 cat eye syndrome chromosome region, candidate 6 O cat eye syndrome critical region protein 6 20121230 -9606 27440 CECR5 - - HGNC:1843|Ensembl:ENSG00000069998|HPRD:16703|Vega:OTTHUMG00000150071 22 - cat eye syndrome chromosome region, candidate 5 protein-coding CECR5 cat eye syndrome chromosome region, candidate 5 O cat eye syndrome critical region protein 5 20121230 -9606 27442 CECR3 - - HGNC:1841 22 - cat eye syndrome chromosome region, candidate 3 (non-protein coding) miscRNA CECR3 cat eye syndrome chromosome region, candidate 3 (non-protein coding) O - 20121230 -9606 27443 CECR2 - - HGNC:1840|MIM:607576|Ensembl:ENSG00000099954|Vega:OTTHUMG00000150072 22 22q11.2 cat eye syndrome chromosome region, candidate 2 protein-coding CECR2 cat eye syndrome chromosome region, candidate 2 O cat eye syndrome critical region protein 2 20121230 -9606 27445 PCLO tcag7.1085 ACZ HGNC:13406|MIM:604918|Ensembl:ENSG00000186472|HPRD:16078|Vega:OTTHUMG00000154853 7 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) protein-coding PCLO piccolo (presynaptic cytomatrix protein) O aczonin|protein piccolo 20121230 -9606 28227 PPP2R3B LL0YNC03-56G10.1 NYREN8|PPP2R3L|PPP2R3LY|PR48 HGNC:13417|MIM:300339|Ensembl:ENSG00000167393|HPRD:02276|Vega:OTTHUMG00000021052 X|Y Xp22.33; Yp11.3 protein phosphatase 2, regulatory subunit B'', beta protein-coding PPP2R3B protein phosphatase 2, regulatory subunit B'', beta O NY-REN-8 antigen|PP2A, subunit B, PR48 isoform|protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta|serine/threonine protein phosphatase 2A, 48kDa regulatory subunit B|serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta 20121230 -9606 28231 SLCO4A1 - OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 HGNC:10953|MIM:612436|Ensembl:ENSG00000101187|HPRD:11582|Vega:OTTHUMG00000032923 20 20q13.33 solute carrier organic anion transporter family, member 4A1 protein-coding SLCO4A1 solute carrier organic anion transporter family, member 4A1 O OATP-RP1|colon organic anion transporter|organic anion transporter polypeptide-related protein 1|organic anion transporting polypeptide E|organic anion-transporting polypeptide E|sodium-independent organic anion transporter E|solute carrier family 21 (organic anion transporter), member 12|solute carrier family 21 member 12|solute carrier organic anion transporter family member 4A1 20121230 -9606 28232 SLCO3A1 - OATP-D|OATP3A1|OATPD|SLC21A11 HGNC:10952|MIM:612435|Ensembl:ENSG00000176463|HPRD:07502|Vega:OTTHUMG00000149846 15 15q26 solute carrier organic anion transporter family, member 3A1 protein-coding SLCO3A1 solute carrier organic anion transporter family, member 3A1 O OATP-RP3|OATPRP3|PGE1 transporter|organic anion transporter polypeptide-related protein 3|organic anion-transporting polypeptide D|sodium-independent organic anion transporter D|solute carrier family 21 (organic anion transporter), member 11|solute carrier family 21 member 11|solute carrier organic anion transporter family member 3A1 20121230 -9606 28234 SLCO1B3 - HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 HGNC:10961|MIM:605495|Ensembl:ENSG00000111700|Ensembl:ENSG00000257046|HPRD:12021|Vega:OTTHUMG00000169011|Vega:OTTHUMG00000169018 12 12p12 solute carrier organic anion transporter family, member 1B3 protein-coding SLCO1B3 solute carrier organic anion transporter family, member 1B3 O liver-specific organic anion transporter 2|liver-specific organic anion transporter 3TM13|organic anion transporter 8|organic anion transporter LST-3c|organic anion-transporting polypeptide 8|solute carrier family 21 (organic anion transporter), member 8|solute carrier organic anion transporter family member 1B3 20121230 -9606 28299 IGKV1-5 - IGKV|IGKV15|L12|L12a|V1 HGNC:5741|IMGT/GENE-DB:IGKV1-5 2 2p12 immunoglobulin kappa variable 1-5 other IGKV1-5 immunoglobulin kappa variable 1-5 O - 20121230 -9606 28300 IGHV3OR16-16 - IGHV3OR1616 HGNC:5640|IMGT/GENE-DB:IGHV3/OR16-16 16 16p11.2 immunoglobulin heavy variable 3/OR16-16 (pseudogene) pseudo IGHV3OR16-16 immunoglobulin heavy variable 3/OR16-16 (pseudogene) O - 20111109 -9606 28301 IGHV3OR16-15 - IGHV3OR1615 HGNC:5639|IMGT/GENE-DB:IGHV3/OR16-15 16 16p11.2 immunoglobulin heavy variable 3/OR16-15 (pseudogene) pseudo IGHV3OR16-15 immunoglobulin heavy variable 3/OR16-15 (pseudogene) O - 20111109 -9606 28304 IGHV3OR16-12 - IGHV3OR1612 HGNC:5636|IMGT/GENE-DB:IGHV3/OR16-12 16 16p11.2 immunoglobulin heavy variable 3/OR16-12 (non-functional) pseudo IGHV3OR16-12 immunoglobulin heavy variable 3/OR16-12 (non-functional) O - 20121230 -9606 28305 IGHV3OR16-11 - IGHV3OR1611 HGNC:5635|IMGT/GENE-DB:IGHV3/OR16-11 16 16p11.2 immunoglobulin heavy variable 3/OR16-11 (pseudogene) pseudo IGHV3OR16-11 immunoglobulin heavy variable 3/OR16-11 (pseudogene) O - 20121230 -9606 28306 IGHV3OR16-10 - IGHV3OR1610 HGNC:5634|IMGT/GENE-DB:IGHV3/OR16-10 16 16p11.2 immunoglobulin heavy variable 3/OR16-10 (non-functional) pseudo IGHV3OR16-10 immunoglobulin heavy variable 3/OR16-10 (non-functional) O - 20111109 -9606 28307 IGHV3OR16-9 - IGHV3OR169 HGNC:5644|IMGT/GENE-DB:IGHV3/OR16-9 16 16p11.2 immunoglobulin heavy variable 3/OR16-9 (non-functional) pseudo IGHV3OR16-9 immunoglobulin heavy variable 3/OR16-9 (non-functional) O - 20111109 -9606 28309 IGHV3OR16-7 - IGHV3OR167 HGNC:5642|IMGT/GENE-DB:IGHV3/OR16-7 16 16p11.2 immunoglobulin heavy variable 3/OR16-7 (pseudogene) pseudo IGHV3OR16-7 immunoglobulin heavy variable 3/OR16-7 (pseudogene) O - 20121230 -9606 28312 IGHV1OR16-4 - IGHV1OR164 HGNC:5573|IMGT/GENE-DB:IGHV1/OR16-4 16 16p11.2 immunoglobulin heavy variable 1/OR16-4 (pseudogene) pseudo IGHV1OR16-4 immunoglobulin heavy variable 1/OR16-4 (pseudogene) O - 20111109 -9606 28313 IGHV1OR16-3 - IGHV1OR163 HGNC:5572|IMGT/GENE-DB:IGHV1/OR16-3 16 16p11.2 immunoglobulin heavy variable 1/OR16-3 (pseudogene) pseudo IGHV1OR16-3 immunoglobulin heavy variable 1/OR16-3 (pseudogene) O - 20111109 -9606 28314 IGHV1OR16-2 - IGHV1OR162 HGNC:5571|IMGT/GENE-DB:IGHV1/OR16-2 16 16p11.2 immunoglobulin heavy variable 1/OR16-2 (pseudogene) pseudo IGHV1OR16-2 immunoglobulin heavy variable 1/OR16-2 (pseudogene) O - 20111109 -9606 28315 IGHV1OR16-1 - IGHV1OR161 HGNC:5570|IMGT/GENE-DB:IGHV1/OR16-1 16 16p11.2 immunoglobulin heavy variable 1/OR16-1 (pseudogene) pseudo IGHV1OR16-1 immunoglobulin heavy variable 1/OR16-1 (pseudogene) O - 20121230 -9606 28316 CDH20 - CDH7L3|Cdh7 HGNC:1760|MIM:605807|Ensembl:ENSG00000101542|HPRD:10429|Vega:OTTHUMG00000132768 18 18q21.33 cadherin 20, type 2 protein-coding CDH20 cadherin 20, type 2 O cadherin-20 20121230 -9606 28317 IGHV4OR15-8 - IGHV4OR158|VSIG6 HGNC:5658|IMGT/GENE-DB:IGHV4/OR15-8 15 15q11.2 immunoglobulin heavy variable 4/OR15-8 (non-functional) other IGHV4OR15-8 immunoglobulin heavy variable 4/OR15-8 (non-functional) O - 20121204 -9606 28318 IGHV3OR15-7 - IGHV3OR157 HGNC:5633|IMGT/GENE-DB:IGHV3/OR15-7 15 15q11.2 immunoglobulin heavy variable 3/OR15-7 (pseudogene) pseudo IGHV3OR15-7 immunoglobulin heavy variable 3/OR15-7 (pseudogene) O - 20121021 -9606 28320 IGHV1OR15-6 - IGHV1OR156 HGNC:5568|IMGT/GENE-DB:IGHV1/OR15-6 15 15q11.2 immunoglobulin heavy variable 1/OR15-6 (pseudogene) pseudo IGHV1OR15-6 immunoglobulin heavy variable 1/OR15-6 (pseudogene) O - 20111109 -9606 28326 IGHD5OR15-5B - IGHD5OR155B HGNC:5513|IMGT/GENE-DB:IGHD5/OR15-5b 15 15q11.2 immunoglobulin heavy diversity 5/OR15-5B (non-functional) pseudo IGHD5OR15-5B immunoglobulin heavy diversity 5/OR15-5B (non-functional) O - 20111109 -9606 28327 IGHD5OR15-5A - IGHD5OR155A HGNC:5512|IMGT/GENE-DB:IGHD5/OR15-5a 15 15q11.2 immunoglobulin heavy diversity 5/OR15-5A (non-functional) other IGHD5OR15-5A immunoglobulin heavy diversity 5/OR15-5A (non-functional) O - 20111109 -9606 28328 IGHD4OR15-4B - IGHD4OR154B HGNC:5507|IMGT/GENE-DB:IGHD4/OR15-4b 15 15q11.2 immunoglobulin heavy diversity 4/OR15-4B (non-functional) other IGHD4OR15-4B immunoglobulin heavy diversity 4/OR15-4B (non-functional) O - 20111109 -9606 28329 IGHD4OR15-4A - IGHD4OR154A HGNC:5506|IMGT/GENE-DB:IGHD4/OR15-4a 15 15q11.2 immunoglobulin heavy diversity 4/OR15-4A (non-functional) other IGHD4OR15-4A immunoglobulin heavy diversity 4/OR15-4A (non-functional) O - 20111109 -9606 28330 IGHD3OR15-3B - IGHD3OR153B HGNC:5501|IMGT/GENE-DB:IGHD3/OR15-3b 15 15q11.2 immunoglobulin heavy diversity 3/OR15-3B (non-functional) other IGHD3OR15-3B immunoglobulin heavy diversity 3/OR15-3B (non-functional) O - 20111109 -9606 28331 IGHD3OR15-3A - IGHD3OR153A HGNC:5500|IMGT/GENE-DB:IGHD3/OR15-3a 15 15q11.2 immunoglobulin heavy diversity 3/OR15-3A (non-functional) other IGHD3OR15-3A immunoglobulin heavy diversity 3/OR15-3A (non-functional) O - 20111109 -9606 28332 IGHD2OR15-2B - IGHD2OR152B HGNC:5494|IMGT/GENE-DB:IGHD2/OR15-2b 15 15q11.2 immunoglobulin heavy diversity 2/OR15-2B (non-functional) other IGHD2OR15-2B immunoglobulin heavy diversity 2/OR15-2B (non-functional) O - 20111109 -9606 28333 IGHD2OR15-2A - IGHD2OR152A HGNC:5493|IMGT/GENE-DB:IGHD2/OR15-2a 15 15q11.2 immunoglobulin heavy diversity 2/OR15-2A (non-functional) other IGHD2OR15-2A immunoglobulin heavy diversity 2/OR15-2A (non-functional) O - 20111109 -9606 28334 IGHD1OR15-1B - IGHD1OR151B HGNC:5488|IMGT/GENE-DB:IGHD1/OR15-1b 15 15q11.2 immunoglobulin heavy diversity 1/OR15-1B (non-functional) other IGHD1OR15-1B immunoglobulin heavy diversity 1/OR15-1B (non-functional) O - 20111109 -9606 28335 IGHD1OR15-1A - IGHD1OR151A HGNC:5487|IMGT/GENE-DB:IGHD1/OR15-1a 15 15q11.2 immunoglobulin heavy diversity 1/OR15-1A (non-functional) other IGHD1OR15-1A immunoglobulin heavy diversity 1/OR15-1A (non-functional) O - 20111109 -9606 28337 IGHVIV-44-1 - (IV)-44|4-44.1P|IGHVIV441 HGNC:5710|IMGT/GENE-DB:IGHV(IV)-44-1 14 14q32.33 immunoglobulin heavy variable (IV)-44-1 (pseudogene) pseudo IGHVIV-44-1 immunoglobulin heavy variable (IV)-44-1 (pseudogene) O - 20121230 -9606 28338 IGHVIII-82 - 3-82P|IGHVIII82 HGNC:5709|IMGT/GENE-DB:IGHV(III)-82 14 14q32.33 immunoglobulin heavy variable (III)-82 (pseudogene) pseudo IGHVIII-82 immunoglobulin heavy variable (III)-82 (pseudogene) O - 20121230 -9606 28339 IGHVIII-76-1 - 3-76.1P|IGHVIII761 HGNC:5708|IMGT/GENE-DB:IGHV(III)-76-1 14 14q32.33 immunoglobulin heavy variable (III)-76-1 (pseudogene) pseudo IGHVIII-76-1 immunoglobulin heavy variable (III)-76-1 (pseudogene) O - 20121230 -9606 28340 IGHVIII-67-4 - 3-67.4P|IGHVIII674 HGNC:5707|IMGT/GENE-DB:IGHV(III)-67-4 14 14q32.33 immunoglobulin heavy variable (III)-67-4 (pseudogene) pseudo IGHVIII-67-4 immunoglobulin heavy variable (III)-67-4 (pseudogene) O - 20121230 -9606 28341 IGHVIII-67-3 - 3-67.3P|IGHV(III)-6|IGHVIII673 HGNC:5706|IMGT/GENE-DB:IGHV(III)-67-3 14 14q32.33 immunoglobulin heavy variable (III)-67-3 (pseudogene) pseudo IGHVIII-67-3 immunoglobulin heavy variable (III)-67-3 (pseudogene) O - 20121230 -9606 28342 IGHVIII-67-2 - 3-67.2P|IGHVIII672 HGNC:5705|IMGT/GENE-DB:IGHV(III)-67-2 14 14q32.33 immunoglobulin heavy variable (III)-67-2 (pseudogene) pseudo IGHVIII-67-2 immunoglobulin heavy variable (III)-67-2 (pseudogene) O - 20121230 -9606 28343 IGHVIII-51-1 - 3-51.1P|IGHVIII511 HGNC:5704|IMGT/GENE-DB:IGHV(III)-51-1 14 14q32.33 immunoglobulin heavy variable (III)-51-1 (pseudogene) pseudo IGHVIII-51-1 immunoglobulin heavy variable (III)-51-1 (pseudogene) O - 20121230 -9606 28344 IGHVIII-47-1 - 3-47.1P|IGHVIII471 HGNC:5701|IMGT/GENE-DB:IGHV(III)-47-1 14 14q32.33 immunoglobulin heavy variable (III)-47-1 (pseudogene) pseudo IGHVIII-47-1 immunoglobulin heavy variable (III)-47-1 (pseudogene) O - 20121230 -9606 28345 IGHVIII-44 - 3-44P|IGHVIII44 HGNC:5700|IMGT/GENE-DB:IGHV(III)-44 14 14q32.33 immunoglobulin heavy variable (III)-44 (pseudogene) pseudo IGHVIII-44 immunoglobulin heavy variable (III)-44 (pseudogene) O - 20121230 -9606 28346 IGHVIII-38-1 - 3-38.1P|38-1|IGHVIII381 HGNC:5699|IMGT/GENE-DB:IGHV(III)-38-1 14 14q32.33 immunoglobulin heavy variable (III)-38-1 (pseudogene) pseudo IGHVIII-38-1 immunoglobulin heavy variable (III)-38-1 (pseudogene) O - 20121230 -9606 28347 IGHVIII-26-1 - 3-26.1P|IGHVIII261 HGNC:5698|IMGT/GENE-DB:IGHV(III)-26-1 14 14q32.33 immunoglobulin heavy variable (III)-26-1 (pseudogene) pseudo IGHVIII-26-1 immunoglobulin heavy variable (III)-26-1 (pseudogene) O - 20121230 -9606 28348 IGHVIII-25-1 - 3-25.1P|IGHVIII251 HGNC:5697|IMGT/GENE-DB:IGHV(III)-25-1 14 14q32.33 immunoglobulin heavy variable (III)-25-1 (pseudogene) pseudo IGHVIII-25-1 immunoglobulin heavy variable (III)-25-1 (pseudogene) O - 20121230 -9606 28349 IGHVIII-22-2 - 3-22.2P|IGHVIII222 HGNC:5696|IMGT/GENE-DB:IGHV(III)-22-2 14 14q32.33 immunoglobulin heavy variable (III)-22-2 (pseudogene) pseudo IGHVIII-22-2 immunoglobulin heavy variable (III)-22-2 (pseudogene) O - 20121230 -9606 28350 IGHVIII-16-1 - 3-16.1P|IGHVIII161 HGNC:5694|IMGT/GENE-DB:IGHV(III)-16-1 14 14q32.33 immunoglobulin heavy variable (III)-16-1 (pseudogene) pseudo IGHVIII-16-1 immunoglobulin heavy variable (III)-16-1 (pseudogene) O - 20121230 -9606 28351 IGHVIII-13-1 - 3-13.1P|IGHVIII131 HGNC:5693|IMGT/GENE-DB:IGHV(III)-13-1 14 14q32.33 immunoglobulin heavy variable (III)-13-1 (pseudogene) pseudo IGHVIII-13-1 immunoglobulin heavy variable (III)-13-1 (pseudogene) O - 20121230 -9606 28352 IGHVIII-11-1 - 3-11.1P|IGHVIII111 HGNC:5692|IMGT/GENE-DB:IGHV(III)-11-1 14 14q32.33 immunoglobulin heavy variable (III)-11-1 (pseudogene) pseudo IGHVIII-11-1 immunoglobulin heavy variable (III)-11-1 (pseudogene) O - 20121230 -9606 28353 IGHVIII-5-2 - 3-05.2P|IGHVIII52 HGNC:5703|IMGT/GENE-DB:IGHV(III)-5-2 14 14q32.33 immunoglobulin heavy variable (III)-5-2 (pseudogene) pseudo IGHVIII-5-2 immunoglobulin heavy variable (III)-5-2 (pseudogene) O - 20121230 -9606 28354 IGHVIII-5-1 - 3-05.1P|IGHVIII51 HGNC:5702|IMGT/GENE-DB:IGHV(III)-5-1 14 14q32.33 immunoglobulin heavy variable (III)-5-1 (pseudogene) pseudo IGHVIII-5-1 immunoglobulin heavy variable (III)-5-1 (pseudogene) O - 20121230 -9606 28355 IGHVIII-2-1 - 3-02.1P|IGHVIII21 HGNC:5695|IMGT/GENE-DB:IGHV(III)-2-1 14 14q32.33 immunoglobulin heavy variable (III)-2-1 (pseudogene) pseudo IGHVIII-2-1 immunoglobulin heavy variable (III)-2-1 (pseudogene) O - 20121230 -9606 28356 IGHVII-78-1 - 4-78.1P|IGHVII781 HGNC:5691|IMGT/GENE-DB:IGHV(II)-78-1 14 14q32.33 immunoglobulin heavy variable (II)-78-1 (pseudogene) pseudo IGHVII-78-1 immunoglobulin heavy variable (II)-78-1 (pseudogene) O - 20121230 -9606 28357 IGHVII-74-1 - 4-74.1P|IGHVII741 HGNC:5690|IMGT/GENE-DB:IGHV(II)-74-1 14 14q32.33 immunoglobulin heavy variable (II)-74-1 (pseudogene) pseudo IGHVII-74-1 immunoglobulin heavy variable (II)-74-1 (pseudogene) O - 20121230 -9606 28358 IGHVII-67-1 - 4-67.1P|IGHVII671 HGNC:5689|IMGT/GENE-DB:IGHV(II)-67-1 14 14q32.33 immunoglobulin heavy variable (II)-67-1 (pseudogene) pseudo IGHVII-67-1 immunoglobulin heavy variable (II)-67-1 (pseudogene) O - 20121230 -9606 28359 IGHVII-65-1 - 4-65.1P|IGHVII651 HGNC:5688|IMGT/GENE-DB:IGHV(II)-65-1 14 14q32.33 immunoglobulin heavy variable (II)-65-1 (pseudogene) pseudo IGHVII-65-1 immunoglobulin heavy variable (II)-65-1 (pseudogene) O - 20121230 -9606 28360 IGHVII-62-1 - 4-62.1P|IGHVII621 HGNC:5687|IMGT/GENE-DB:IGHV(II)-62-1 14 14q32.33 immunoglobulin heavy variable (II)-62-1 (pseudogene) pseudo IGHVII-62-1 immunoglobulin heavy variable (II)-62-1 (pseudogene) O - 20121230 -9606 28361 IGHVII-60-1 - 4-60.1P|IGHVII601 HGNC:5686|IMGT/GENE-DB:IGHV(II)-60-1 14 14q32.33 immunoglobulin heavy variable (II)-60-1 (pseudogene) pseudo IGHVII-60-1 immunoglobulin heavy variable (II)-60-1 (pseudogene) O - 20121230 -9606 28362 IGHVII-53-1 - 4-53.1P|IGHVII531 HGNC:5685|IMGT/GENE-DB:IGHV(II)-53-1 14 14q32.33 immunoglobulin heavy variable (II)-53-1 (pseudogene) pseudo IGHVII-53-1 immunoglobulin heavy variable (II)-53-1 (pseudogene) O - 20121230 -9606 28363 IGHVII-51-2 - 4-51.2P|IGHVII512 HGNC:5684|IMGT/GENE-DB:IGHV(II)-51-2 14 14q32.33 immunoglobulin heavy variable (II)-51-2 (pseudogene) pseudo IGHVII-51-2 immunoglobulin heavy variable (II)-51-2 (pseudogene) O - 20121230 -9606 28364 IGHVII-49-1 - 4-49.1P|IGHVII491 HGNC:5683|IMGT/GENE-DB:IGHV(II)-49-1 14 14q32.33 immunoglobulin heavy variable (II)-49-1 (pseudogene) pseudo IGHVII-49-1 immunoglobulin heavy variable (II)-49-1 (pseudogene) O - 20121230 -9606 28365 IGHVII-46-1 - 4-46.1P|IGHVII461 HGNC:5682|IMGT/GENE-DB:IGHV(II)-46-1 14 14q32.33 immunoglobulin heavy variable (II)-46-1 (pseudogene) pseudo IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) O - 20121230 -9606 28366 IGHVII-44-2 - 4-44.2P|IGHVII442 HGNC:5681|IMGT/GENE-DB:IGHV(II)-44-2 14 14q32.33 immunoglobulin heavy variable (II)-44-2 (pseudogene) pseudo IGHVII-44-2 immunoglobulin heavy variable (II)-44-2 (pseudogene) O - 20121230 -9606 28367 IGHVII-43-1 - 4-43.1P|IGHVII431 HGNC:5680|IMGT/GENE-DB:IGHV(II)-43-1 14 14q32.33 immunoglobulin heavy variable (II)-43-1 (pseudogene) pseudo IGHVII-43-1 immunoglobulin heavy variable (II)-43-1 (pseudogene) O - 20121230 -9606 28368 IGHVII-40-1 - 4-40.1P|IGHVII401 HGNC:5679|IMGT/GENE-DB:IGHV(II)-40-1 14 14q32.33 immunoglobulin heavy variable (II)-40-1 (pseudogene) pseudo IGHVII-40-1 immunoglobulin heavy variable (II)-40-1 (pseudogene) O - 20121230 -9606 28369 IGHVII-33-1 - 4-33.1P|IGHVII331 HGNC:5678|IMGT/GENE-DB:IGHV(II)-33-1 14 14q32.33 immunoglobulin heavy variable (II)-33-1 (pseudogene) pseudo IGHVII-33-1 immunoglobulin heavy variable (II)-33-1 (pseudogene) O - 20121230 -9606 28370 IGHVII-31-1 - 4-31.1P|IGHVII311 HGNC:5677|IMGT/GENE-DB:IGHV(II)-31-1 14 14q32.33 immunoglobulin heavy variable (II)-31-1 (pseudogene) pseudo IGHVII-31-1 immunoglobulin heavy variable (II)-31-1 (pseudogene) O - 20121230 -9606 28371 IGHVII-30-1 - 4-30.1P|IGHVII301 HGNC:5676|IMGT/GENE-DB:IGHV(II)-30-1 14 14q32.33 immunoglobulin heavy variable (II)-30-1 (pseudogene) pseudo IGHVII-30-1 immunoglobulin heavy variable (II)-30-1 (pseudogene) O - 20121230 -9606 28372 IGHVII-28-1 - 4-28.1P|IGHVII281 HGNC:5675|IMGT/GENE-DB:IGHV(II)-28-1 14 14q32.33 immunoglobulin heavy variable (II)-28-1 (pseudogene) pseudo IGHVII-28-1 immunoglobulin heavy variable (II)-28-1 (pseudogene) O - 20121230 -9606 28373 IGHVII-26-2 - 4-26.2P|IGHVII262 HGNC:5674|IMGT/GENE-DB:IGHV(II)-26-2 14 14q32.33 immunoglobulin heavy variable (II)-26-2 (pseudogene) pseudo IGHVII-26-2 immunoglobulin heavy variable (II)-26-2 (pseudogene) O - 20121230 -9606 28374 IGHVII-22-1 - 4-22.1P|IGHVII221 HGNC:5673|IMGT/GENE-DB:IGHV(II)-22-1 14 14q32.33 immunoglobulin heavy variable (II)-22-1 (pseudogene) pseudo IGHVII-22-1 immunoglobulin heavy variable (II)-22-1 (pseudogene) O - 20121230 -9606 28375 IGHVII-20-1 - 4-20.1P|IGHVII201 HGNC:5672|IMGT/GENE-DB:IGHV(II)-20-1 14 14q32.33 immunoglobulin heavy variable (II)-20-1 (pseudogene) pseudo IGHVII-20-1 immunoglobulin heavy variable (II)-20-1 (pseudogene) O - 20121230 -9606 28376 IGHVII-15-1 - 4-15.1P|IGHVII151 HGNC:5671|IMGT/GENE-DB:IGHV(II)-15-1 14 14q32.33 immunoglobulin heavy variable (II)-15-1 (pseudogene) pseudo IGHVII-15-1 immunoglobulin heavy variable (II)-15-1 (pseudogene) O - 20121230 -9606 28377 IGHVII-1-1 - 4-01.1P|IGHVII11 HGNC:5670|IMGT/GENE-DB:IGHV(II)-1-1 14 14q32.33 immunoglobulin heavy variable (II)-1-1 (pseudogene) pseudo IGHVII-1-1 immunoglobulin heavy variable (II)-1-1 (pseudogene) O - 20121230 -9606 28378 IGHV7-81 - IGHV781 HGNC:5669|IMGT/GENE-DB:IGHV7-81 14 14q32.33 immunoglobulin heavy variable 7-81 (non-functional) other IGHV7-81 immunoglobulin heavy variable 7-81 (non-functional) O - 20121230 -9606 28380 IGHV7-56 - 7-56P|IGHV756 HGNC:5667|IMGT/GENE-DB:IGHV7-56 14 14q32.33 immunoglobulin heavy variable 7-56 (pseudogene) pseudo IGHV7-56 immunoglobulin heavy variable 7-56 (pseudogene) O - 20121230 -9606 28381 IGHV7-40 - 7-40P|IGHV740 HGNC:5666|IMGT/GENE-DB:IGHV7-40 14 14q32.33 immunoglobulin heavy variable 7-40 (pseudogene) pseudo IGHV7-40 immunoglobulin heavy variable 7-40 (pseudogene) O - 20121230 -9606 28382 IGHV7-34-1 - 7-34.1P|IGHV7341 HGNC:5664|IMGT/GENE-DB:IGHV7-34-1 14 14q32.33 immunoglobulin heavy variable 7-34-1 (pseudogene) pseudo IGHV7-34-1 immunoglobulin heavy variable 7-34-1 (pseudogene) O - 20121230 -9606 28383 IGHV7-27 - 7-27P|IGHV727 HGNC:5663|IMGT/GENE-DB:IGHV7-27 14 14q32.33 immunoglobulin heavy variable 7-27 (pseudogene) pseudo IGHV7-27 immunoglobulin heavy variable 7-27 (pseudogene) O - 20121230 -9606 28385 IGHV6-1 - IGHV61|VH HGNC:5662|IMGT/GENE-DB:IGHV6-1 14 14q32.33 immunoglobulin heavy variable 6-1 other IGHV6-1 immunoglobulin heavy variable 6-1 O - 20121230 -9606 28386 IGHV5-A - IGHV5A HGNC:5661|IMGT/GENE-DB:IGHV5-a 14 14q32.33 immunoglobulin heavy variable 5-A (provisional) other IGHV5-A immunoglobulin heavy variable 5-A (provisional) O - 20120603 -9606 28387 IGHV5-78 - 5-78P|IGHV578 HGNC:5660|IMGT/GENE-DB:IGHV5-78 14 14q32.33 immunoglobulin heavy variable 5-78 (pseudogene) pseudo IGHV5-78 immunoglobulin heavy variable 5-78 (pseudogene) O - 20121230 -9606 28388 IGHV5-51 - IGHV551|VH HGNC:5659|IMGT/GENE-DB:IGHV5-51 14 14q32.33 immunoglobulin heavy variable 5-51 other IGHV5-51 immunoglobulin heavy variable 5-51 O - 20121230 -9606 28389 IGHV4-B - IGHV4B HGNC:5657|IMGT/GENE-DB:IGHV4-b 14 14q32.33 immunoglobulin heavy variable 4-B (provisional) other IGHV4-B immunoglobulin heavy variable 4-B (provisional) O - 20120212 -9606 28390 IGHV4-80 - 4-80P|IGHV480 HGNC:5656|IMGT/GENE-DB:IGHV4-80 14 14q32.33 immunoglobulin heavy variable 4-80 (pseudogene) pseudo IGHV4-80 immunoglobulin heavy variable 4-80 (pseudogene) O - 20121230 -9606 28391 IGHV4-61 - IGHV461|VH HGNC:5655|IMGT/GENE-DB:IGHV4-61 14 14q32.33 immunoglobulin heavy variable 4-61 other IGHV4-61 immunoglobulin heavy variable 4-61 O - 20121230 -9606 28392 IGHV4-59 - IGHV459|VH HGNC:5654|IMGT/GENE-DB:IGHV4-59 14 14q32.33 immunoglobulin heavy variable 4-59 other IGHV4-59 immunoglobulin heavy variable 4-59 O - 20121230 -9606 28393 IGHV4-55 - 4-55P|IGHV455 HGNC:5653|IMGT/GENE-DB:IGHV4-55 14 14q32.33 immunoglobulin heavy variable 4-55 (pseudogene) pseudo IGHV4-55 immunoglobulin heavy variable 4-55 (pseudogene) O - 20121230 -9606 28394 IGHV4-39 - IGHV439|VH HGNC:5651|IMGT/GENE-DB:IGHV4-39 14 14q32.33 immunoglobulin heavy variable 4-39 other IGHV4-39 immunoglobulin heavy variable 4-39 O - 20121230 -9606 28395 IGHV4-34 - IGHV434|VH HGNC:5650|IMGT/GENE-DB:IGHV4-34 14 14q32.33 immunoglobulin heavy variable 4-34 other IGHV4-34 immunoglobulin heavy variable 4-34 O - 20121230 -9606 28396 IGHV4-31 - IGHV431 HGNC:5649|IMGT/GENE-DB:IGHV4-31 14 14q32.33 immunoglobulin heavy variable 4-31 other IGHV4-31 immunoglobulin heavy variable 4-31 O - 20121230 -9606 28397 IGHV4-30-4 - IGHV4-3|IGHV4304 HGNC:5648|IMGT/GENE-DB:IGHV4-30-4 14 14q32.33 immunoglobulin heavy variable 4-30-4 other IGHV4-30-4 immunoglobulin heavy variable 4-30-4 O - 20111109 -9606 28398 IGHV4-30-2 - IGHV4-3|IGHV4302 HGNC:5647|IMGT/GENE-DB:IGHV4-30-2 14 14q32.33 immunoglobulin heavy variable 4-30-2 other IGHV4-30-2 immunoglobulin heavy variable 4-30-2 O - 20111109 -9606 28399 IGHV4-30-1 - IGHV4-3 HGNC:5646|IMGT/GENE-DB:IGHV4-30-1 14 14q32.33 immunoglobulin heavy variable 4-30-1 other IGHV4-30-1 immunoglobulin heavy variable 4-30-1 O - 20111109 -9606 28400 IGHV4-28 - IGHV428|VH HGNC:5645|IMGT/GENE-DB:IGHV4-28 14 14q32.33 immunoglobulin heavy variable 4-28 other IGHV4-28 immunoglobulin heavy variable 4-28 O - 20121230 -9606 28401 IGHV4-4 - IGHV44|VH HGNC:5652|IMGT/GENE-DB:IGHV4-4 14 14q32.33 immunoglobulin heavy variable 4-4 other IGHV4-4 immunoglobulin heavy variable 4-4 O - 20121230 -9606 28402 IGHV3-H - IGHV3H HGNC:5631|IMGT/GENE-DB:IGHV3-h 14 14q32.33 immunoglobulin heavy variable 3-H (pseudogene) pseudo IGHV3-H immunoglobulin heavy variable 3-H (pseudogene) O - 20111109 -9606 28404 IGHV3-D - IGHV3D HGNC:5629|IMGT/GENE-DB:IGHV3-d 14 14q32.33 immunoglobulin heavy variable 3-D (provisional) other IGHV3-D immunoglobulin heavy variable 3-D (provisional) O - 20120114 -9606 28405 IGHV3-79 - 3-79P|IGHV379 HGNC:5627|IMGT/GENE-DB:IGHV3-79 14 14q32.33 immunoglobulin heavy variable 3-79 (pseudogene) pseudo IGHV3-79 immunoglobulin heavy variable 3-79 (pseudogene) O - 20121230 -9606 28406 IGHV3-76 - 3-76P|IGHV376 HGNC:5626|IMGT/GENE-DB:IGHV3-76 14 14q32.33 immunoglobulin heavy variable 3-76 (pseudogene) pseudo IGHV3-76 immunoglobulin heavy variable 3-76 (pseudogene) O - 20121230 -9606 28407 IGHV3-75 - 3-75P|IGHV375 HGNC:5625|IMGT/GENE-DB:IGHV3-75 14 14q32.33 immunoglobulin heavy variable 3-75 (pseudogene) pseudo IGHV3-75 immunoglobulin heavy variable 3-75 (pseudogene) O - 20121230 -9606 28408 IGHV3-74 - IGHV374|VH HGNC:5624|IMGT/GENE-DB:IGHV3-74 14 14q32.33 immunoglobulin heavy variable 3-74 other IGHV3-74 immunoglobulin heavy variable 3-74 O - 20121230 -9606 28409 IGHV3-73 - IGHV373|VH HGNC:5623|IMGT/GENE-DB:IGHV3-73 14 14q32.33 immunoglobulin heavy variable 3-73 other IGHV3-73 immunoglobulin heavy variable 3-73 O - 20121230 -9606 28410 IGHV3-72 - IGHV372|VH HGNC:5622|IMGT/GENE-DB:IGHV3-72 14 14q32.33 immunoglobulin heavy variable 3-72 other IGHV3-72 immunoglobulin heavy variable 3-72 O - 20121230 -9606 28411 IGHV3-71 - 3-71P|IGHV3-G|IGHV371|IGHV3G HGNC:5621|IMGT/GENE-DB:IGHV3-71 14 14q32.33 immunoglobulin heavy variable 3-71 (pseudogene) pseudo IGHV3-71 immunoglobulin heavy variable 3-71 (pseudogene) O - 20121230 -9606 28412 IGHV3-66 - IGHV366|VH HGNC:5619|IMGT/GENE-DB:IGHV3-66 14 14q32.33 immunoglobulin heavy variable 3-66 other IGHV3-66 immunoglobulin heavy variable 3-66 O - 20121230 -9606 28413 IGHV3-65 - 3-65P|IGHV365 HGNC:5618|IMGT/GENE-DB:IGHV3-65 14 14q32.33 immunoglobulin heavy variable 3-65 (pseudogene) pseudo IGHV3-65 immunoglobulin heavy variable 3-65 (pseudogene) O - 20121230 -9606 28414 IGHV3-64 - IGHV364|VH HGNC:5617|IMGT/GENE-DB:IGHV3-64 14 14q32.33 immunoglobulin heavy variable 3-64 other IGHV3-64 immunoglobulin heavy variable 3-64 O - 20121230 -9606 28415 IGHV3-63 - IGHV363|V3-63P HGNC:5616|IMGT/GENE-DB:IGHV3-63 14 14q32.33 immunoglobulin heavy variable 3-63 (pseudogene) pseudo IGHV3-63 immunoglobulin heavy variable 3-63 (pseudogene) O - 20121230 -9606 28416 IGHV3-62 - 3-62P|IGHV362 HGNC:5615|IMGT/GENE-DB:IGHV3-62 14 14q32.33 immunoglobulin heavy variable 3-62 (pseudogene) pseudo IGHV3-62 immunoglobulin heavy variable 3-62 (pseudogene) O - 20121230 -9606 28417 IGHV3-60 - 3-60P|IGHV360 HGNC:5614|IMGT/GENE-DB:IGHV3-60 14 14q32.33 immunoglobulin heavy variable 3-60 (pseudogene) pseudo IGHV3-60 immunoglobulin heavy variable 3-60 (pseudogene) O - 20121230 -9606 28418 IGHV3-57 - 3-57P|IGHV357 HGNC:5612|IMGT/GENE-DB:IGHV3-57 14 14q32.33 immunoglobulin heavy variable 3-57 (pseudogene) pseudo IGHV3-57 immunoglobulin heavy variable 3-57 (pseudogene) O - 20121230 -9606 28419 IGHV3-54 - 3-54P|IGHV354 HGNC:5611|IMGT/GENE-DB:IGHV3-54 14 14q32.33 immunoglobulin heavy variable 3-54 (pseudogene) pseudo IGHV3-54 immunoglobulin heavy variable 3-54 (pseudogene) O - 20121230 -9606 28420 IGHV3-53 - IGHV353|VH HGNC:5610|IMGT/GENE-DB:IGHV3-53 14 14q32.33 immunoglobulin heavy variable 3-53 other IGHV3-53 immunoglobulin heavy variable 3-53 O - 20121230 -9606 28421 IGHV3-52 - 3-52P|IGHV352 HGNC:5609|IMGT/GENE-DB:IGHV3-52 14 14q32.33 immunoglobulin heavy variable 3-52 (pseudogene) pseudo IGHV3-52 immunoglobulin heavy variable 3-52 (pseudogene) O - 20121230 -9606 28422 IGHV3-50 - 3-50P|IGHV350 HGNC:5608|IMGT/GENE-DB:IGHV3-50 14 14q32.33 immunoglobulin heavy variable 3-50 (pseudogene) pseudo IGHV3-50 immunoglobulin heavy variable 3-50 (pseudogene) O - 20121230 -9606 28423 IGHV3-49 - IGHV349|VH HGNC:5607|IMGT/GENE-DB:IGHV3-49 14 14q32.33 immunoglobulin heavy variable 3-49 other IGHV3-49 immunoglobulin heavy variable 3-49 O - 20121230 -9606 28424 IGHV3-48 - IGHV348|VH HGNC:5606|IMGT/GENE-DB:IGHV3-48 14 14q32.33 immunoglobulin heavy variable 3-48 other IGHV3-48 immunoglobulin heavy variable 3-48 O - 20121230 -9606 28425 IGHV3-47 - 3-47P|IGHV347 HGNC:5605|IMGT/GENE-DB:IGHV3-47 14 14q32.33 immunoglobulin heavy variable 3-47 (pseudogene) pseudo IGHV3-47 immunoglobulin heavy variable 3-47 (pseudogene) O - 20121230 -9606 28426 IGHV3-43 - IGHV343|VH HGNC:5604|IMGT/GENE-DB:IGHV3-43 14 14q32.33 immunoglobulin heavy variable 3-43 other IGHV3-43 immunoglobulin heavy variable 3-43 O - 20121230 -9606 28427 IGHV3-42 - 3-42P|IGHV342 HGNC:5603|IMGT/GENE-DB:IGHV3-42 14 14q32.33 immunoglobulin heavy variable 3-42 (pseudogene) pseudo IGHV3-42 immunoglobulin heavy variable 3-42 (pseudogene) O - 20121230 -9606 28428 IGHV3-41 - 3-41P|IGHV341 HGNC:5602|IMGT/GENE-DB:IGHV3-41 14 14q32.33 immunoglobulin heavy variable 3-41 (pseudogene) pseudo IGHV3-41 immunoglobulin heavy variable 3-41 (pseudogene) O - 20121230 -9606 28429 IGHV3-38 - IGHV338|VH HGNC:5601|IMGT/GENE-DB:IGHV3-38 14 14q32.33 immunoglobulin heavy variable 3-38 (non-functional) other IGHV3-38 immunoglobulin heavy variable 3-38 (non-functional) O - 20121230 -9606 28430 IGHV3-37 - 3-37P|IGHV337 HGNC:5600|IMGT/GENE-DB:IGHV3-37 14 14q32.33 immunoglobulin heavy variable 3-37 (pseudogene) pseudo IGHV3-37 immunoglobulin heavy variable 3-37 (pseudogene) O - 20121230 -9606 28431 IGHV3-36 - 3-36P|IGHV336 HGNC:5599|IMGT/GENE-DB:IGHV3-36 14 14q32.33 immunoglobulin heavy variable 3-36 (pseudogene) pseudo IGHV3-36 immunoglobulin heavy variable 3-36 (pseudogene) O - 20121230 -9606 28432 IGHV3-35 - IGHV335|VH HGNC:5598|IMGT/GENE-DB:IGHV3-35 14 14q32.33 immunoglobulin heavy variable 3-35 (non-functional) other IGHV3-35 immunoglobulin heavy variable 3-35 (non-functional) O - 20121230 -9606 28433 IGHV3-33-2 - 3-33.2P|IGHV3332 HGNC:5597|IMGT/GENE-DB:IGHV3-33-2 14 14q32.33 immunoglobulin heavy variable 3-33-2 (pseudogene) pseudo IGHV3-33-2 immunoglobulin heavy variable 3-33-2 (pseudogene) O - 20121230 -9606 28434 IGHV3-33 - IGHV333|VH HGNC:5596|IMGT/GENE-DB:IGHV3-33 14 14q32.33 immunoglobulin heavy variable 3-33 other IGHV3-33 immunoglobulin heavy variable 3-33 O - 20121230 -9606 28435 IGHV3-32 - 3-32P|IGHV332 HGNC:5595|IMGT/GENE-DB:IGHV3-32 14 14q32.33 immunoglobulin heavy variable 3-32 (pseudogene) pseudo IGHV3-32 immunoglobulin heavy variable 3-32 (pseudogene) O - 20121230 -9606 28438 IGHV3-30-2 - 3-30.2P|IGHV3302 HGNC:5592|IMGT/GENE-DB:IGHV3-30-2 14 14q32.33 immunoglobulin heavy variable 3-30-2 (pseudogene) pseudo IGHV3-30-2 immunoglobulin heavy variable 3-30-2 (pseudogene) O - 20121230 -9606 28439 IGHV3-30 - IGHV330|VH HGNC:5591|IMGT/GENE-DB:IGHV3-30 14 14q32.33 immunoglobulin heavy variable 3-30 other IGHV3-30 immunoglobulin heavy variable 3-30 O - 20121230 -9606 28440 IGHV3-29 - 3-29P|IGHV329 HGNC:5590|IMGT/GENE-DB:IGHV3-29 14 14q32.33 immunoglobulin heavy variable 3-29 (pseudogene) pseudo IGHV3-29 immunoglobulin heavy variable 3-29 (pseudogene) O - 20121230 -9606 28441 IGHV3-25 - 3-25P|IGHV325 HGNC:5589|IMGT/GENE-DB:IGHV3-25 14 14q32.33 immunoglobulin heavy variable 3-25 (pseudogene) pseudo IGHV3-25 immunoglobulin heavy variable 3-25 (pseudogene) O - 20121230 -9606 28442 IGHV3-23 - DP47|IGHV323|V3-23|VH26 HGNC:5588|MIM:611939|IMGT/GENE-DB:IGHV3-23 14 14q32.33 immunoglobulin heavy variable 3-23 other IGHV3-23 immunoglobulin heavy variable 3-23 O - 20121230 -9606 28443 IGHV3-22 - 3-22P|IGHV322 HGNC:5587|IMGT/GENE-DB:IGHV3-22 14 14q32.33 immunoglobulin heavy variable 3-22 (pseudogene) pseudo IGHV3-22 immunoglobulin heavy variable 3-22 (pseudogene) O - 20121230 -9606 28444 IGHV3-21 - IGHV321|VH HGNC:5586|IMGT/GENE-DB:IGHV3-21 14 14q32.33 immunoglobulin heavy variable 3-21 other IGHV3-21 immunoglobulin heavy variable 3-21 O - 20121230 -9606 28445 IGHV3-20 - IGHV320|VH HGNC:5585|IMGT/GENE-DB:IGHV3-20 14 14q32.33 immunoglobulin heavy variable 3-20 other IGHV3-20 immunoglobulin heavy variable 3-20 O - 20121230 -9606 28446 IGHV3-19 - 3-19P|IGHV319 HGNC:5584|IMGT/GENE-DB:IGHV3-19 14 14q32.33 immunoglobulin heavy variable 3-19 (pseudogene) pseudo IGHV3-19 immunoglobulin heavy variable 3-19 (pseudogene) O - 20121230 -9606 28447 IGHV3-16 - IGHV316|VH HGNC:5583|IMGT/GENE-DB:IGHV3-16 14 14q32.33 immunoglobulin heavy variable 3-16 (non-functional) other IGHV3-16 immunoglobulin heavy variable 3-16 (non-functional) O - 20121230 -9606 28448 IGHV3-15 - IGHV315|VH HGNC:5582|IMGT/GENE-DB:IGHV3-15 14 14q32.33 immunoglobulin heavy variable 3-15 other IGHV3-15 immunoglobulin heavy variable 3-15 O - 20121230 -9606 28449 IGHV3-13 - IGHV313 HGNC:5581|IMGT/GENE-DB:IGHV3-13 14 14q32.33 immunoglobulin heavy variable 3-13 other IGHV3-13 immunoglobulin heavy variable 3-13 O - 20121230 -9606 28450 IGHV3-11 - IGHV311|VH HGNC:5580|IMGT/GENE-DB:IGHV3-11 14 14q32.33 immunoglobulin heavy variable 3-11 (gene/pseudogene) other IGHV3-11 immunoglobulin heavy variable 3-11 (gene/pseudogene) O - 20121230 -9606 28451 IGHV3-9 - IGHV39|VH HGNC:5628|IMGT/GENE-DB:IGHV3-9 14 14q32.33 immunoglobulin heavy variable 3-9 other IGHV3-9 immunoglobulin heavy variable 3-9 O - 20121230 -9606 28452 IGHV3-7 - IGHV37|VH HGNC:5620|IMGT/GENE-DB:IGHV3-7 14 14q32.33 immunoglobulin heavy variable 3-7 other IGHV3-7 immunoglobulin heavy variable 3-7 O - 20121230 -9606 28453 IGHV3-6 - 3-06P|IGHV36 HGNC:5613|IMGT/GENE-DB:IGHV3-6 14 14q32.33 immunoglobulin heavy variable 3-6 (pseudogene) pseudo IGHV3-6 immunoglobulin heavy variable 3-6 (pseudogene) O - 20121230 -9606 28454 IGHV2-70 - IGHV270|VH HGNC:5577|IMGT/GENE-DB:IGHV2-70 14 14q32.33 immunoglobulin heavy variable 2-70 other IGHV2-70 immunoglobulin heavy variable 2-70 O - 20121230 -9606 28455 IGHV2-26 - IGHV226|VH HGNC:5575|IMGT/GENE-DB:IGHV2-26 14 14q32.33 immunoglobulin heavy variable 2-26 other IGHV2-26 immunoglobulin heavy variable 2-26 O - 20121230 -9606 28456 IGHV2-10 - 2-10P|IGHV210 HGNC:5574|IMGT/GENE-DB:IGHV2-10 14 14q32.33 immunoglobulin heavy variable 2-10 (pseudogene) pseudo IGHV2-10 immunoglobulin heavy variable 2-10 (pseudogene) O - 20121230 -9606 28457 IGHV2-5 - IGHV25|VH HGNC:5576|IMGT/GENE-DB:IGHV2-5 14 14q32.33 immunoglobulin heavy variable 2-5 other IGHV2-5 immunoglobulin heavy variable 2-5 O - 20121230 -9606 28458 IGHV1-F - IGHV1F HGNC:5562|IMGT/GENE-DB:IGHV1-f 14 14q32.33 immunoglobulin heavy variable 1-F (provisional) other IGHV1-F immunoglobulin heavy variable 1-F (provisional) O - 20120212 -9606 28460 IGHV1-C - IGHV1C HGNC:5560|IMGT/GENE-DB:IGHV1-c 14 14q32.33 immunoglobulin heavy variable 1-C (provisional, non-functional) other IGHV1-C immunoglobulin heavy variable 1-C (provisional, non-functional) O - 20120212 -9606 28461 IGHV1-69 - IGHV1-E|IGHV169|IGHV1E HGNC:5558|IMGT/GENE-DB:IGHV1-69 14 14q32.33 immunoglobulin heavy variable 1-69 other IGHV1-69 immunoglobulin heavy variable 1-69 O - 20121230 -9606 28462 IGHV1-68 - 1-68P|IGHV168 HGNC:5557|IMGT/GENE-DB:IGHV1-68 14 14q32.33 immunoglobulin heavy variable 1-68 (pseudogene) pseudo IGHV1-68 immunoglobulin heavy variable 1-68 (pseudogene) O - 20121230 -9606 28463 IGHV1-67 - 1-67P|IGHV167 HGNC:5556|IMGT/GENE-DB:IGHV1-67 14 14q32.33 immunoglobulin heavy variable 1-67 (pseudogene) pseudo IGHV1-67 immunoglobulin heavy variable 1-67 (pseudogene) O - 20121230 -9606 28464 IGHV1-58 - IGHV158|VH HGNC:5555|IMGT/GENE-DB:IGHV1-58 14 14q32.33 immunoglobulin heavy variable 1-58 other IGHV1-58 immunoglobulin heavy variable 1-58 O - 20121230 -9606 28465 IGHV1-46 - IGHV146 HGNC:5554|IMGT/GENE-DB:IGHV1-46 14 14q32.33 immunoglobulin heavy variable 1-46 other IGHV1-46 immunoglobulin heavy variable 1-46 O - 20121230 -9606 28466 IGHV1-45 - IGHV145|VH HGNC:5553|IMGT/GENE-DB:IGHV1-45 14 14q32.33 immunoglobulin heavy variable 1-45 other IGHV1-45 immunoglobulin heavy variable 1-45 O - 20121230 -9606 28467 IGHV1-24 hCG_2038918 IGHV124|VH HGNC:5551|IMGT/GENE-DB:IGHV1-24 14 14q32.33 immunoglobulin heavy variable 1-24 other IGHV1-24 immunoglobulin heavy variable 1-24 O - 20121230 -9606 28468 IGHV1-18 - IGHV118 HGNC:5549|IMGT/GENE-DB:IGHV1-18 14 14q32.33 immunoglobulin heavy variable 1-18 other IGHV1-18 immunoglobulin heavy variable 1-18 O - 20121230 -9606 28469 IGHV1-17 - 1-17P|IGHV117 HGNC:5548|IMGT/GENE-DB:IGHV1-17 14 14q32.33 immunoglobulin heavy variable 1-17 (pseudogene) pseudo IGHV1-17 immunoglobulin heavy variable 1-17 (pseudogene) O - 20121230 -9606 28470 IGHV1-14 - 1-14P|IGHV114 HGNC:5547|IMGT/GENE-DB:IGHV1-14 14 14q32.33 immunoglobulin heavy variable 1-14 (pseudogene) pseudo IGHV1-14 immunoglobulin heavy variable 1-14 (pseudogene) O - 20121230 -9606 28471 IGHV1-12 - 1-12P|IGHV112 HGNC:5546|IMGT/GENE-DB:IGHV1-12 14 14q32.33 immunoglobulin heavy variable 1-12 (pseudogene) pseudo IGHV1-12 immunoglobulin heavy variable 1-12 (pseudogene) O - 20121230 -9606 28472 IGHV1-8 - IGHV18 HGNC:5559|IMGT/GENE-DB:IGHV1-8 14 14q32.33 immunoglobulin heavy variable 1-8 other IGHV1-8 immunoglobulin heavy variable 1-8 O - 20121230 -9606 28473 IGHV1-3 - IGHV13|VI-3B HGNC:5552|IMGT/GENE-DB:IGHV1-3 14 14q32.33 immunoglobulin heavy variable 1-3 other IGHV1-3 immunoglobulin heavy variable 1-3 O - 20121230 -9606 28474 IGHV1-2 - IGHV12|V35 HGNC:5550|IMGT/GENE-DB:IGHV1-2 14 14q32.33 immunoglobulin heavy variable 1-2 other IGHV1-2 immunoglobulin heavy variable 1-2 O - 20121230 -9606 28475 IGHJ6 - JH6b HGNC:5540|IMGT/GENE-DB:IGHJ6 14 14q32.33 immunoglobulin heavy joining 6 other IGHJ6 immunoglobulin heavy joining 6 O - 20121230 -9606 28476 IGHJ5 - JH5b HGNC:5539|IMGT/GENE-DB:IGHJ5 14 14q32.33 immunoglobulin heavy joining 5 other IGHJ5 immunoglobulin heavy joining 5 O - 20121230 -9606 28477 IGHJ4 - JH4b HGNC:5538|IMGT/GENE-DB:IGHJ4 14 14q32.33 immunoglobulin heavy joining 4 other IGHJ4 immunoglobulin heavy joining 4 O - 20121230 -9606 28478 IGHJ3P - Jpsi3 HGNC:5537|IMGT/GENE-DB:IGHJ3P 14 14q32.33 immunoglobulin heavy joining 3P (pseudogene) pseudo IGHJ3P immunoglobulin heavy joining 3P (pseudogene) O - 20121230 -9606 28479 IGHJ3 - JH3b HGNC:5536|IMGT/GENE-DB:IGHJ3 14 14q32.33 immunoglobulin heavy joining 3 other IGHJ3 immunoglobulin heavy joining 3 O - 20121230 -9606 28480 IGHJ2P - Jpsi2 HGNC:5535|IMGT/GENE-DB:IGHJ2P 14 14q32.33 immunoglobulin heavy joining 2P (pseudogene) pseudo IGHJ2P immunoglobulin heavy joining 2P (pseudogene) O - 20121230 -9606 28481 IGHJ2 - JH2 HGNC:5534|IMGT/GENE-DB:IGHJ2 14 14q32.33 immunoglobulin heavy joining 2 other IGHJ2 immunoglobulin heavy joining 2 O - 20121230 -9606 28482 IGHJ1P - J-psi-1|Jpsi1 HGNC:5533|IMGT/GENE-DB:IGHJ1P 14 14q32.33 immunoglobulin heavy joining 1P (pseudogene) pseudo IGHJ1P immunoglobulin heavy joining 1P (pseudogene) O - 20121230 -9606 28483 IGHJ1 - JH1 HGNC:5532|IMGT/GENE-DB:IGHJ1 14 14q32.33 immunoglobulin heavy joining 1 other IGHJ1 immunoglobulin heavy joining 1 O - 20121230 -9606 28484 IGHD7-27 - DHQ52|IGHD727 HGNC:5518|IMGT/GENE-DB:IGHD7-27 14 14q32.33 immunoglobulin heavy diversity 7-27 other IGHD7-27 immunoglobulin heavy diversity 7-27 O - 20121230 -9606 28485 IGHD6-25 - IGHD625 HGNC:5516|IMGT/GENE-DB:IGHD6-25 14 14q32.33 immunoglobulin heavy diversity 6-25 other IGHD6-25 immunoglobulin heavy diversity 6-25 O - 20121230 -9606 28486 IGHD6-19 - IGHD619 HGNC:5515|IMGT/GENE-DB:IGHD6-19 14 14q32.33 immunoglobulin heavy diversity 6-19 other IGHD6-19 immunoglobulin heavy diversity 6-19 O - 20121230 -9606 28487 IGHD6-13 - DN1|IGHD613 HGNC:5514|IMGT/GENE-DB:IGHD6-13 14 14q32.33 immunoglobulin heavy diversity 6-13 other IGHD6-13 immunoglobulin heavy diversity 6-13 O - 20121230 -9606 28488 IGHD6-6 - D(N4)|IGHD66 HGNC:5517|IMGT/GENE-DB:IGHD6-6 14 14q32.33 immunoglobulin heavy diversity 6-6 other IGHD6-6 immunoglobulin heavy diversity 6-6 O - 20121230 -9606 28489 IGHD5-24 - IGHD524 HGNC:5510|IMGT/GENE-DB:IGHD5-24 14 14q32.33 immunoglobulin heavy diversity 5-24 (non-functional) other IGHD5-24 immunoglobulin heavy diversity 5-24 (non-functional) O - 20121230 -9606 28490 IGHD5-18 - IGHD518 HGNC:5509|IMGT/GENE-DB:IGHD5-18 14 14q32.33 immunoglobulin heavy diversity 5-18 other IGHD5-18 immunoglobulin heavy diversity 5-18 O - 20121230 -9606 28491 IGHD5-12 - DK1|IGHD512 HGNC:5508|IMGT/GENE-DB:IGHD5-12 14 14q32.33 immunoglobulin heavy diversity 5-12 other IGHD5-12 immunoglobulin heavy diversity 5-12 O - 20121230 -9606 28492 IGHD5-5 - DK4|IGHD55 HGNC:5511|IMGT/GENE-DB:IGHD5-5 14 14q32.33 immunoglobulin heavy diversity 5-5 other IGHD5-5 immunoglobulin heavy diversity 5-5 O - 20121230 -9606 28493 IGHD4-23 - IGHD423 HGNC:5504|IMGT/GENE-DB:IGHD4-23 14 14q32.33 immunoglobulin heavy diversity 4-23 (non-functional) other IGHD4-23 immunoglobulin heavy diversity 4-23 (non-functional) O - 20121230 -9606 28494 IGHD4-17 - IGHD417 HGNC:5503|IMGT/GENE-DB:IGHD4-17 14 14q32.33 immunoglobulin heavy diversity 4-17 other IGHD4-17 immunoglobulin heavy diversity 4-17 O - 20121230 -9606 28495 IGHD4-11 - DA1|IGHD411 HGNC:5502|IMGT/GENE-DB:IGHD4-11 14 14q32.33 immunoglobulin heavy diversity 4-11 (non-functional) other IGHD4-11 immunoglobulin heavy diversity 4-11 (non-functional) O - 20121230 -9606 28496 IGHD4-4 - DA4|IGHD44 HGNC:5505|IMGT/GENE-DB:IGHD4-4 14 14q32.33 immunoglobulin heavy diversity 4-4 other IGHD4-4 immunoglobulin heavy diversity 4-4 O - 20121230 -9606 28497 IGHD3-22 - IGHD322 HGNC:5497|IMGT/GENE-DB:IGHD3-22 14 14q32.33 immunoglobulin heavy diversity 3-22 other IGHD3-22 immunoglobulin heavy diversity 3-22 O - 20121230 -9606 28498 IGHD3-16 - IGHD316 HGNC:5496|IMGT/GENE-DB:IGHD3-16 14 14q32.33 immunoglobulin heavy diversity 3-16 other IGHD3-16 immunoglobulin heavy diversity 3-16 O - 20121230 -9606 28499 IGHD3-10 - DXP'1|IGHD310 HGNC:5495|IMGT/GENE-DB:IGHD3-10 14 14q32.33 immunoglobulin heavy diversity 3-10 other IGHD3-10 immunoglobulin heavy diversity 3-10 O - 20121230 -9606 28500 IGHD3-9 - DXP1|IGHD39 HGNC:5499|IMGT/GENE-DB:IGHD3-9 14 14q32.33 immunoglobulin heavy diversity 3-9 other IGHD3-9 immunoglobulin heavy diversity 3-9 O - 20121230 -9606 28501 IGHD3-3 - DXP4|IGHD33 HGNC:5498|MIM:611937|IMGT/GENE-DB:IGHD3-3 14 14q32.33 immunoglobulin heavy diversity 3-3 other IGHD3-3 immunoglobulin heavy diversity 3-3 O - 20121230 -9606 28502 IGHD2-21 - IGHD221 HGNC:5491|IMGT/GENE-DB:IGHD2-21 14 14q32.33 immunoglobulin heavy diversity 2-21 other IGHD2-21 immunoglobulin heavy diversity 2-21 O - 20121230 -9606 28503 IGHD2-15 - D2|IGHD215 HGNC:5489|IMGT/GENE-DB:IGHD2-15 14 14q32.33 immunoglobulin heavy diversity 2-15 other IGHD2-15 immunoglobulin heavy diversity 2-15 O - 20121230 -9606 28504 IGHD2-8 - DLR1|IGHD28 HGNC:5492|IMGT/GENE-DB:IGHD2-8 14 14q32.33 immunoglobulin heavy diversity 2-8 other IGHD2-8 immunoglobulin heavy diversity 2-8 O - 20121230 -9606 28505 IGHD2-2 - IGHD22 HGNC:5490|IMGT/GENE-DB:IGHD2-2 14 14q32.33 immunoglobulin heavy diversity 2-2 other IGHD2-2 immunoglobulin heavy diversity 2-2 O - 20121230 -9606 28506 IGHD1-26 - IGHD126 HGNC:5485|IMGT/GENE-DB:IGHD1-26 14 14q32.33 immunoglobulin heavy diversity 1-26 other IGHD1-26 immunoglobulin heavy diversity 1-26 O - 20121230 -9606 28507 IGHD1-20 - IGHD120 HGNC:5484|IMGT/GENE-DB:IGHD1-20 14 14q32.33 immunoglobulin heavy diversity 1-20 other IGHD1-20 immunoglobulin heavy diversity 1-20 O - 20121230 -9606 28508 IGHD1-14 - DM2|IGHD114 HGNC:5483|IMGT/GENE-DB:IGHD1-14 14 14q32.33 immunoglobulin heavy diversity 1-14 (non-functional) other IGHD1-14 immunoglobulin heavy diversity 1-14 (non-functional) O - 20121230 -9606 28509 IGHD1-7 - DM1|IGHD17 HGNC:5486|IMGT/GENE-DB:IGHD1-7 14 14q32.33 immunoglobulin heavy diversity 1-7 other IGHD1-7 immunoglobulin heavy diversity 1-7 O - 20121230 -9606 28510 IGHD1-1 - IGHD11 HGNC:5482|IMGT/GENE-DB:IGHD1-1 14 14q32.33 immunoglobulin heavy diversity 1-1 other IGHD1-1 immunoglobulin heavy diversity 1-1 O - 20121230 -9606 28511 NKIRAS2 - KBRAS2|kappaB-Ras2 HGNC:17898|MIM:604497|Ensembl:ENSG00000168256|HPRD:07261|Vega:OTTHUMG00000133503 17 17q21.2 NFKB inhibitor interacting Ras-like 2 protein-coding NKIRAS2 NFKB inhibitor interacting Ras-like 2 O I-kappa-B-interacting Ras-like protein 2|NF-kappa-B inhibitor-interacting Ras-like protein 2|NFKB inhibitor interacting Ras-like protein 2|kappa B-Ras protein 2 20121230 -9606 28512 NKIRAS1 - KBRAS1|kappaB-Ras1 HGNC:17899|MIM:604496|Ensembl:ENSG00000197885|HPRD:06841|Vega:OTTHUMG00000155605 3 3p24.2 NFKB inhibitor interacting Ras-like 1 protein-coding NKIRAS1 NFKB inhibitor interacting Ras-like 1 O I-kappa-B-interacting Ras-like protein 1|NF-kappa-B inhibitor-interacting Ras-like protein 1|NFKB inhibitor interacting Ras-like protein 1|kappa B-Ras protein 1|kappa B-ras 1 20121230 -9606 28513 CDH19 UNQ478/PRO941 CDH7|CDH7L2 HGNC:1758|MIM:603016|Ensembl:ENSG00000071991|HPRD:04311|Vega:OTTHUMG00000132802 18 18q22.1 cadherin 19, type 2 protein-coding CDH19 cadherin 19, type 2 O cadherin-19 20121230 -9606 28514 DLL1 UNQ146/PRO172 DELTA1|DL1|Delta HGNC:2908|MIM:606582|Ensembl:ENSG00000198719|HPRD:05957|Vega:OTTHUMG00000016078 6 6q27 delta-like 1 (Drosophila) protein-coding DLL1 delta-like 1 (Drosophila) O H-Delta-1|delta-like protein 1|drosophila Delta homolog 1 20121230 -9606 28515 HYPLIP2 - FCHL2 MIM:604499 11 11p hyperlipidemia, combined, 2 unknown - - - - 20120622 -9606 28516 TRDV3 - hDV103S1 HGNC:12264|IMGT/GENE-DB:TRDV3 14 14q11 T cell receptor delta variable 3 other TRDV3 T cell receptor delta variable 3 O - 20121230 -9606 28517 TRDV2 - hDV102S1 HGNC:12263|IMGT/GENE-DB:TRDV2 14 14q11 T cell receptor delta variable 2 other TRDV2 T cell receptor delta variable 2 O - 20121230 -9606 28518 TRDV1 - hDV101S1 HGNC:12262|IMGT/GENE-DB:TRDV1 14 14q11 T cell receptor delta variable 1 other TRDV1 T cell receptor delta variable 1 O - 20121230 -9606 28519 TRDJ4 - - HGNC:12260|IMGT/GENE-DB:TRDJ4 14 14q11.2 T cell receptor delta joining 4 other TRDJ4 T cell receptor delta joining 4 O - 20121230 -9606 28520 TRDJ3 - - HGNC:12259|IMGT/GENE-DB:TRDJ3 14 14q11 T cell receptor delta joining 3 other TRDJ3 T cell receptor delta joining 3 O - 20121230 -9606 28521 TRDJ2 - - HGNC:12258|IMGT/GENE-DB:TRDJ2 14 14q11 T cell receptor delta joining 2 other TRDJ2 T cell receptor delta joining 2 O - 20121230 -9606 28522 TRDJ1 - TCRD HGNC:12257|IMGT/GENE-DB:TRDJ1 14 14q11 T cell receptor delta joining 1 other TRDJ1 T cell receptor delta joining 1 O - 20121230 -9606 28523 TRDD3 - TCRD HGNC:12256|IMGT/GENE-DB:TRDD3 14 14q11 T cell receptor delta diversity 3 other TRDD3 T cell receptor delta diversity 3 O - 20121230 -9606 28524 TRDD2 - - HGNC:12255|IMGT/GENE-DB:TRDD2 14 14q11 T cell receptor delta diversity 2 other TRDD2 T cell receptor delta diversity 2 O - 20121230 -9606 28525 TRDD1 - - HGNC:12254|IMGT/GENE-DB:TRDD1 14 14q11 T cell receptor delta diversity 1 other TRDD1 T cell receptor delta diversity 1 O - 20121230 -9606 28526 TRDC - - HGNC:12253|IMGT/GENE-DB:TRDC 14 14q11 T cell receptor delta constant other TRDC T cell receptor delta constant O - 20121230 -9606 28552 TRBV23OR9-2 RP11-255A11.11-001 TCRBV19S2O|TCRBV23S2|TRBV23OR92 HGNC:12202|IMGT/GENE-DB:TRBV23/OR9-2 9 9p21 T cell receptor beta variable 23/OR9-2 (non-functional) pseudo TRBV23OR9-2 T cell receptor beta variable 23/OR9-2 (non-functional) O - 20121230 -9606 28555 TRBVB - TCRBV34S1 HGNC:12248|IMGT/GENE-DB:TRBVB 7 7q34 T cell receptor beta variable B (pseudogene) pseudo TRBVB T cell receptor beta variable B (pseudogene) O - 20121230 -9606 28556 TRBVA - TCRBV33S1 HGNC:12247|IMGT/GENE-DB:TRBVA 7 7q34 T cell receptor beta variable A (pseudogene) pseudo TRBVA T cell receptor beta variable A (pseudogene) O - 20121230 -9606 28557 TRBV30 - TCRBV20S1A1N2|TCRBV30S1 HGNC:12214|IMGT/GENE-DB:TRBV30 7 7q34 T cell receptor beta variable 30 (gene/pseudogene) other TRBV30 T cell receptor beta variable 30 (gene/pseudogene) O - 20121230 -9606 28558 TRBV29-1 - TCRBV29S1|TCRBV4S1A1T|TRBV291 HGNC:12210|IMGT/GENE-DB:TRBV29-1 7 7q34 T cell receptor beta variable 29-1 other TRBV29-1 T cell receptor beta variable 29-1 O - 20121230 -9606 28559 TRBV28 - TCRBV28S1|TCRBV3S1 HGNC:12209|IMGT/GENE-DB:TRBV28 7 7q34 T cell receptor beta variable 28 other TRBV28 T cell receptor beta variable 28 O - 20121230 -9606 28560 TRBV27 - TCRBV14S1|TCRBV27S1 HGNC:12208|IMGT/GENE-DB:TRBV27 7 7q34 T cell receptor beta variable 27 other TRBV27 T cell receptor beta variable 27 O - 20121230 -9606 28561 TRBV26 - TCRBV26S1|TCRBV28S1P HGNC:12207|IMGT/GENE-DB:TRBV26 7 7q34 T cell receptor beta variable 26 (pseudogene) pseudo TRBV26 T cell receptor beta variable 26 (pseudogene) O - 20121230 -9606 28562 TRBV25-1 - TCRBV11S1A1T|TCRBV25S1|TRBV251 HGNC:12205|IMGT/GENE-DB:TRBV25-1 7 7q34 T cell receptor beta variable 25-1 other TRBV25-1 T cell receptor beta variable 25-1 O - 20121230 -9606 28563 TRBV24-1 - TCRBV15S1|TCRBV24S1|TRBV241 HGNC:12203|IMGT/GENE-DB:TRBV24-1 7 7q34 T cell receptor beta variable 24-1 other TRBV24-1 T cell receptor beta variable 24-1 O - 20121230 -9606 28564 TRBV23-1 - TCRBV19S1P|TCRBV23S1|TRBV231 HGNC:12201|IMGT/GENE-DB:TRBV23-1 7 7q34 T cell receptor beta variable 23-1 (non-functional) pseudo TRBV23-1 T cell receptor beta variable 23-1 (non-functional) O - 20121230 -9606 28565 TRBV22-1 - TCRBV22S1|TCRBV29S1P|TRBV22 HGNC:12200|IMGT/GENE-DB:TRBV22-1 7 7q34 T cell receptor beta variable 22-1 (pseudogene) pseudo TRBV22-1 T cell receptor beta variable 22-1 (pseudogene) O - 20121230 -9606 28566 TRBV21-1 - TCRBV10S1P|TCRBV21S1|TRBV211 HGNC:12198|IMGT/GENE-DB:TRBV21-1 7 7q34 T cell receptor beta variable 21-1 (pseudogene) pseudo TRBV21-1 T cell receptor beta variable 21-1 (pseudogene) O - 20121230 -9606 28567 TRBV20-1 - TCRBV20S1|TCRBV2S1|TRBV201 HGNC:12196|IMGT/GENE-DB:TRBV20-1 7 7q34 T cell receptor beta variable 20-1 other TRBV20-1 T cell receptor beta variable 20-1 O - 20121230 -9606 28568 TRBV19 - TCRBV17S1A1T|TCRBV19S1 HGNC:12194|IMGT/GENE-DB:TRBV19 7 7q34 T cell receptor beta variable 19 other TRBV19 T cell receptor beta variable 19 O - 20121230 -9606 28569 TRBV18 - TCRBV18S1 HGNC:12193|IMGT/GENE-DB:TRBV18 7 7q34 T cell receptor beta variable 18 other TRBV18 T cell receptor beta variable 18 O - 20121230 -9606 28570 TRBV17 - TCRBV17S1|TCRBV26S1P HGNC:12192|IMGT/GENE-DB:TRBV17 7 7q34 T cell receptor beta variable 17 (non-functional) other TRBV17 T cell receptor beta variable 17 (non-functional) O - 20121230 -9606 28571 TRBV16 - BV25S1J1.2|TCRBV16S1|TCRBV25S1A2PT HGNC:12191|IMGT/GENE-DB:TRBV16 7 7q34 T cell receptor beta variable 16 (gene/pseudogene) other TRBV16 T cell receptor beta variable 16 (gene/pseudogene) O - 20121230 -9606 28572 TRBV15 - TCRBV15S1|TCRBV24S1A3T HGNC:12190|IMGT/GENE-DB:TRBV15 7 7q34 T cell receptor beta variable 15 other TRBV15 T cell receptor beta variable 15 O - 20121230 -9606 28573 TRBV14 - TCRBV14S1|TCRBV16S1A1N1 HGNC:12189|IMGT/GENE-DB:TRBV14 7 7q34 T cell receptor beta variable 14 other TRBV14 T cell receptor beta variable 14 O - 20121230 -9606 28574 TRBV13 - TCRBV13S1|TCRBV23S1A2T HGNC:12188|IMGT/GENE-DB:TRBV13 7 7q34 T cell receptor beta variable 13 other TRBV13 T cell receptor beta variable 13 O - 20121230 -9606 28575 TRBV12-5 - TCRBV12S5|TCRBV8S3|TRBV125 HGNC:12187|IMGT/GENE-DB:TRBV12-5 7 7q34 T cell receptor beta variable 12-5 other TRBV12-5 T cell receptor beta variable 12-5 O - 20121230 -9606 28576 TRBV12-4 - TCRBV12S4|TCRBV8S2A1T|TRBV124 HGNC:12186|IMGT/GENE-DB:TRBV12-4 7 7q34 T cell receptor beta variable 12-4 other TRBV12-4 T cell receptor beta variable 12-4 O - 20121230 -9606 28577 TRBV12-3 - TCRBV12S3|TCRBV8S1|TRBV123 HGNC:12185|IMGT/GENE-DB:TRBV12-3 7 7q34 T cell receptor beta variable 12-3 other TRBV12-3 T cell receptor beta variable 12-3 O - 20121230 -9606 28578 TRBV12-2 - TCRBV12S2|TCRBV8S5P|TRBV122 HGNC:12184|IMGT/GENE-DB:TRBV12-2 7 7q34 T cell receptor beta variable 12-2 (pseudogene) pseudo TRBV12-2 T cell receptor beta variable 12-2 (pseudogene) O - 20121230 -9606 28579 TRBV12-1 - TCRBV12S1|TCRBV8S4P|TRBV121 HGNC:12183|IMGT/GENE-DB:TRBV12-1 7 7q34 T cell receptor beta variable 12-1 (pseudogene) pseudo TRBV12-1 T cell receptor beta variable 12-1 (pseudogene) O - 20121230 -9606 28580 TRBV11-3 - TCRBV11S3|TCRBV21S2A2|TRBV113 HGNC:12182|IMGT/GENE-DB:TRBV11-3 7 7q34 T cell receptor beta variable 11-3 other TRBV11-3 T cell receptor beta variable 11-3 O - 20121230 -9606 28581 TRBV11-2 - TCRBV11S2|TCRBV21S3A2N2T|TRBV112 HGNC:12181|IMGT/GENE-DB:TRBV11-2 7 7q34 T cell receptor beta variable 11-2 other TRBV11-2 T cell receptor beta variable 11-2 O - 20121230 -9606 28582 TRBV11-1 - TCRBV11S1|TCRBV21S1|TRBV111 HGNC:12180|IMGT/GENE-DB:TRBV11-1 7 7q34 T cell receptor beta variable 11-1 other TRBV11-1 T cell receptor beta variable 11-1 O - 20121230 -9606 28583 TRBV10-3 - TCRBV10S3|TCRBV12S1A1N2|TRBV103 HGNC:12179|IMGT/GENE-DB:TRBV10-3 7 7q34 T cell receptor beta variable 10-3 other TRBV10-3 T cell receptor beta variable 10-3 O - 20121230 -9606 28584 TRBV10-2 - TCRBV10S2|TCRBV12S3|TRBV102 HGNC:12178|IMGT/GENE-DB:TRBV10-2 7 7q34 T cell receptor beta variable 10-2 other TRBV10-2 T cell receptor beta variable 10-2 O - 20121230 -9606 28585 TRBV10-1 - TCRBV10S1|TCRBV12S2|TCRBV12S2A1T|TRBV101 HGNC:12177|IMGT/GENE-DB:TRBV10-1 7 7q34 T cell receptor beta variable 10-1(gene/pseudogene) other TRBV10-1 T cell receptor beta variable 10-1(gene/pseudogene) O - 20121230 -9606 28586 TRBV9 - TCRBV1S1A1N1|TCRBV9S1 HGNC:12246|IMGT/GENE-DB:TRBV9 7 7q34 T cell receptor beta variable 9 other TRBV9 T cell receptor beta variable 9 O - 20121230 -9606 28587 TRBV8-2 - TCRBV32S1P|TRBV82 HGNC:12245|IMGT/GENE-DB:TRBV8-2 7 7q34 T cell receptor beta variable 8-2 (pseudogene) pseudo TRBV8-2 T cell receptor beta variable 8-2 (pseudogene) O - 20121230 -9606 28588 TRBV8-1 - TCRBV30S1P|TCRBV8S1P|TRBV81 HGNC:12244|IMGT/GENE-DB:TRBV8-1 7 7q34 T cell receptor beta variable 8-1 (pseudogene) pseudo TRBV8-1 T cell receptor beta variable 8-1 (pseudogene) O - 20121230 -9606 28589 TRBV7-9 - TCRBV6S4A1|TCRBV7S9|TRBV79 HGNC:12243|IMGT/GENE-DB:TRBV7-9 7 7q34 T cell receptor beta variable 7-9 other TRBV7-9 T cell receptor beta variable 7-9 O - 20121230 -9606 28590 TRBV7-8 - TCRBV6S2A1N1T|TCRBV7S8|TRBV78 HGNC:12242|IMGT/GENE-DB:TRBV7-8 7 7q34 T cell receptor beta variable 7-8 other TRBV7-8 T cell receptor beta variable 7-8 O - 20121230 -9606 28591 TRBV7-7 - TCRBV6S6A2T|TCRBV7S7|TRBV77 HGNC:12241|IMGT/GENE-DB:TRBV7-7 7 7q34 T cell receptor beta variable 7-7 other TRBV7-7 T cell receptor beta variable 7-7 O - 20121230 -9606 28592 TRBV7-6 - TCRBV6S3A1N1T|TCRBV7S6|TRBV76 HGNC:12240|IMGT/GENE-DB:TRBV7-6 7 7q34 T cell receptor beta variable 7-6 other TRBV7-6 T cell receptor beta variable 7-6 O - 20121230 -9606 28593 TRBV7-5 - TCRBV6S9P|TCRBV7S5|TRBV75 HGNC:12239|IMGT/GENE-DB:TRBV7-5 7 7q34 T cell receptor beta variable 7-5 (pseudogene) pseudo TRBV7-5 T cell receptor beta variable 7-5 (pseudogene) O - 20121230 -9606 28594 TRBV7-4 - TCRBV6S8A2T|TCRBV7S4|TRBV74 HGNC:12238|IMGT/GENE-DB:TRBV7-4 7 7q34 T cell receptor beta variable 7-4 (gene/pseudogene) other TRBV7-4 T cell receptor beta variable 7-4 (gene/pseudogene) O - 20121230 -9606 28595 TRBV7-3 - TCRBV6S1A1N1|TCRBV7S3|TRBV73 HGNC:12237|IMGT/GENE-DB:TRBV7-3 7 7q34 T cell receptor beta variable 7-3 other TRBV7-3 T cell receptor beta variable 7-3 O - 20121230 -9606 28596 TRBV7-2 - TCRBV6S5A1N1|TCRBV6S5A2|TCRBV7S2|TRBV72 HGNC:12236|IMGT/GENE-DB:TRBV7-2 7 7q34 T cell receptor beta variable 7-2 other TRBV7-2 T cell receptor beta variable 7-2 O - 20121230 -9606 28597 TRBV7-1 - TCRBV6S7P|TCRBV7S1|TRBV71 HGNC:12235|IMGT/GENE-DB:TRBV7-1 7 7q34 T cell receptor beta variable 7-1 (non-functional) pseudo TRBV7-1 T cell receptor beta variable 7-1 (non-functional) O - 20121230 -9606 28598 TRBV6-9 - TCRBV13S4|TCRBV6S9|TRBV69 HGNC:12234|IMGT/GENE-DB:TRBV6-9 7 7q34 T cell receptor beta variable 6-9 other TRBV6-9 T cell receptor beta variable 6-9 O - 20121230 -9606 28599 TRBV6-8 - TCRBV13S7P|TCRBV6S8|TRBV68 HGNC:12233|IMGT/GENE-DB:TRBV6-8 7 7q34 T cell receptor beta variable 6-8 other TRBV6-8 T cell receptor beta variable 6-8 O - 20121230 -9606 28600 TRBV6-7 - TCRBV13S8P|TCRBV6S7|TRBV67 HGNC:12232|IMGT/GENE-DB:TRBV6-7 7 7q34 T cell receptor beta variable 6-7 (non-functional) other TRBV6-7 T cell receptor beta variable 6-7 (non-functional) O - 20121230 -9606 28601 TRBV6-6 - TCRBV13S6A2T|TCRBV6S6|TRBV66 HGNC:12231|IMGT/GENE-DB:TRBV6-6 7 7q34 T cell receptor beta variable 6-6 other TRBV6-6 T cell receptor beta variable 6-6 O - 20121230 -9606 28602 TRBV6-5 - TCRBV13S1|TCRBV6S5|TRBV65 HGNC:12230|IMGT/GENE-DB:TRBV6-5 7 7q34 T cell receptor beta variable 6-5 other TRBV6-5 T cell receptor beta variable 6-5 O - 20121230 -9606 28603 TRBV6-4 - TCRBV13S5|TCRBV6S4|TRBV64 HGNC:12229|IMGT/GENE-DB:TRBV6-4 7 7q34 T cell receptor beta variable 6-4 other TRBV6-4 T cell receptor beta variable 6-4 O - 20121230 -9606 28604 TRBV6-3 - TCRBV13S9/13S2A1T|TCRBV6S3|TRBV63 HGNC:12228|IMGT/GENE-DB:TRBV6-3 7 7q34 T cell receptor beta variable 6-3 other TRBV6-3 T cell receptor beta variable 6-3 O - 20121230 -9606 28605 TRBV6-2 - TCRBV13S2|TCRBV13S2A1T|TCRBV6S2|TRBV62 HGNC:12227|IMGT/GENE-DB:TRBV6-2 7 7q34 T cell receptor beta variable 6-2 (gene/pseudogene) other TRBV6-2 T cell receptor beta variable 6-2 (gene/pseudogene) O - 20121230 -9606 28606 TRBV6-1 - TCRBV13S3|TCRBV6S1|TRBV61 HGNC:12226|IMGT/GENE-DB:TRBV6-1 7 7q34 T cell receptor beta variable 6-1 other TRBV6-1 T cell receptor beta variable 6-1 O - 20121230 -9606 28607 TRBV5-8 - TCRBV5S4A2T|TCRBV5S8|TRBV58 HGNC:12225|IMGT/GENE-DB:TRBV5-8 7 7q34 T cell receptor beta variable 5-8 other TRBV5-8 T cell receptor beta variable 5-8 O - 20121230 -9606 28608 TRBV5-7 - TCRBV5S7|TCRBV5S7P|TRBV57 HGNC:12224|IMGT/GENE-DB:TRBV5-7 7 7q34 T cell receptor beta variable 5-7 (non-functional) other TRBV5-7 T cell receptor beta variable 5-7 (non-functional) O - 20121230 -9606 28609 TRBV5-6 - TCRBV5S2|TCRBV5S6|TRBV56 HGNC:12223|IMGT/GENE-DB:TRBV5-6 7 7q34 T cell receptor beta variable 5-6 other TRBV5-6 T cell receptor beta variable 5-6 O - 20121230 -9606 28610 TRBV5-5 - TCRBV5S3A2T|TCRBV5S5|TRBV55 HGNC:12222|IMGT/GENE-DB:TRBV5-5 7 7q34 T cell receptor beta variable 5-5 other TRBV5-5 T cell receptor beta variable 5-5 O - 20121230 -9606 28611 TRBV5-4 - TCRBV5S4|TCRBV5S6A3N2T|TRBV54 HGNC:12221|IMGT/GENE-DB:TRBV5-4 7 7q34 T cell receptor beta variable 5-4 other TRBV5-4 T cell receptor beta variable 5-4 O - 20121230 -9606 28612 TRBV5-3 - TCRBV5S3|TCRBV5S5P|TRBV53 HGNC:12220|IMGT/GENE-DB:TRBV5-3 7 7q34 T cell receptor beta variable 5-3 (non-functional) pseudo TRBV5-3 T cell receptor beta variable 5-3 (non-functional) O - 20121230 -9606 28613 TRBV5-2 - TCRBV31S1|TCRBV5S2P|TRBV52 HGNC:12219|IMGT/GENE-DB:TRBV5-2 7 7q34 T cell receptor beta variable 5-2 (pseudogene) pseudo TRBV5-2 T cell receptor beta variable 5-2 (pseudogene) O - 20121230 -9606 28614 TRBV5-1 - TCRBV5S1|TCRBV5S1A1T|TRBV51 HGNC:12218|IMGT/GENE-DB:TRBV5-1 7 7q34 T cell receptor beta variable 5-1 other TRBV5-1 T cell receptor beta variable 5-1 O - 20121230 -9606 28615 TRBV4-3 - TCRBV4S3|TCRBV7S2A1N4T|TRBV43 HGNC:12217|IMGT/GENE-DB:TRBV4-3 7 7q34 T cell receptor beta variable 4-3 other TRBV4-3 T cell receptor beta variable 4-3 O - 20121230 -9606 28616 TRBV4-2 - TCRBV4S2|TCRBV7S3A2|TCRBV7S3A2T|TRBV42 HGNC:12216|IMGT/GENE-DB:TRBV4-2 7 7q34 T cell receptor beta variable 4-2 other TRBV4-2 T cell receptor beta variable 4-2 O - 20121230 -9606 28617 TRBV4-1 - BV07S1J2.7|TCRBV4S1|TCRBV7S1A1N2T|TRBV41 HGNC:12215|IMGT/GENE-DB:TRBV4-1 7 7q34 T cell receptor beta variable 4-1 other TRBV4-1 T cell receptor beta variable 4-1 O - 20121230 -9606 28618 TRBV3-2 - TCRBV3S2|TCRBV9S2A2PT|TRBV32 HGNC:12213|IMGT/GENE-DB:TRBV3-2 7 7q34 T cell receptor beta variable 3-2 (pseudogene) pseudo TRBV3-2 T cell receptor beta variable 3-2 (pseudogene) O - 20121230 -9606 28619 TRBV3-1 - TCRBV3S1|TCRBV9S1A1T|TRBV31 HGNC:12212|IMGT/GENE-DB:TRBV3-1 7 7q34 T cell receptor beta variable 3-1 other TRBV3-1 T cell receptor beta variable 3-1 O - 20121230 -9606 28620 TRBV2 - TCRBV22S1A2N1T|TCRBV2S1 HGNC:12195|IMGT/GENE-DB:TRBV2 7 7q34 T cell receptor beta variable 2 other TRBV2 T cell receptor beta variable 2 O - 20121230 -9606 28621 TRBV1 - TCRBV1S1P|TCRBV27S1P HGNC:12176|IMGT/GENE-DB:TRBV1 7 7q34 T cell receptor beta variable 1 (pseudogene) pseudo TRBV1 T cell receptor beta variable 1 (pseudogene) O - 20121230 -9606 28622 TRBJ2-7 - TCRBJ2S7|TRBJ27 HGNC:12175|IMGT/GENE-DB:TRBJ2-7 7 7q34 T cell receptor beta joining 2-7 other TRBJ2-7 T cell receptor beta joining 2-7 O - 20121230 -9606 28623 TRBJ2-6 - TCRBJ2S6|TRBJ26 HGNC:12174|IMGT/GENE-DB:TRBJ2-6 7 7q34 T cell receptor beta joining 2-6 other TRBJ2-6 T cell receptor beta joining 2-6 O - 20121230 -9606 28624 TRBJ2-5 - TCRBJ2S5|TRBJ25 HGNC:12173|IMGT/GENE-DB:TRBJ2-5 7 7q34 T cell receptor beta joining 2-5 other TRBJ2-5 T cell receptor beta joining 2-5 O - 20121230 -9606 28625 TRBJ2-4 - TCRBJ2S4|TRBJ24 HGNC:12172|IMGT/GENE-DB:TRBJ2-4 7 7q34 T cell receptor beta joining 2-4 other TRBJ2-4 T cell receptor beta joining 2-4 O - 20121230 -9606 28626 TRBJ2-3 - TCRBJ2S3|TRBJ23 HGNC:12171|IMGT/GENE-DB:TRBJ2-3 7 7q34 T cell receptor beta joining 2-3 other TRBJ2-3 T cell receptor beta joining 2-3 O - 20121230 -9606 28627 TRBJ2-2P - TRBJ22P HGNC:12170|IMGT/GENE-DB:TRBJ2-2P 7 7q34 T cell receptor beta joining 2-2P (non-functional) pseudo TRBJ2-2P T cell receptor beta joining 2-2P (non-functional) O - 20121230 -9606 28628 TRBJ2-2 - TCRBJ2S2|TRBJ22 HGNC:12169|IMGT/GENE-DB:TRBJ2-2 7 7q34 T cell receptor beta joining 2-2 other TRBJ2-2 T cell receptor beta joining 2-2 O - 20121230 -9606 28629 TRBJ2-1 - TCRBJ2S1|TRBJ21 HGNC:12168|IMGT/GENE-DB:TRBJ2-1 7 7q34 T cell receptor beta joining 2-1 other TRBJ2-1 T cell receptor beta joining 2-1 O - 20121230 -9606 28630 TRBJ1-6 - TCRBJ1S6|TRBJ16 HGNC:12167|IMGT/GENE-DB:TRBJ1-6 7 7q34 T cell receptor beta joining 1-6 other TRBJ1-6 T cell receptor beta joining 1-6 O - 20121230 -9606 28631 TRBJ1-5 - TCRBJ1S5|TRBJ15 HGNC:12166|IMGT/GENE-DB:TRBJ1-5 7 7q34 T cell receptor beta joining 1-5 other TRBJ1-5 T cell receptor beta joining 1-5 O - 20121230 -9606 28632 TRBJ1-4 - TCRBJ1S4|TRBJ14 HGNC:12165|IMGT/GENE-DB:TRBJ1-4 7 7q34 T cell receptor beta joining 1-4 other TRBJ1-4 T cell receptor beta joining 1-4 O - 20121230 -9606 28633 TRBJ1-3 - TCRBJ1S3|TRBJ13 HGNC:12164|IMGT/GENE-DB:TRBJ1-3 7 7q34 T cell receptor beta joining 1-3 other TRBJ1-3 T cell receptor beta joining 1-3 O - 20121230 -9606 28634 TRBJ1-2 - TCRBJ1S2|TRBJ12 HGNC:12163|IMGT/GENE-DB:TRBJ1-2 7 7q34 T cell receptor beta joining 1-2 other TRBJ1-2 T cell receptor beta joining 1-2 O - 20121230 -9606 28635 TRBJ1-1 - TCRBJ1S1|TRBJ11 HGNC:12162|IMGT/GENE-DB:TRBJ1-1 7 7q34 T cell receptor beta joining 1-1 other TRBJ1-1 T cell receptor beta joining 1-1 O - 20121230 -9606 28636 TRBD2 - TCRBD2 HGNC:12159|IMGT/GENE-DB:TRBD2 7 7q34 T cell receptor beta diversity 2 other TRBD2 T cell receptor beta diversity 2 O - 20121230 -9606 28637 TRBD1 - TCRBD1 HGNC:12158|IMGT/GENE-DB:TRBD1 7 7q34 T cell receptor beta diversity 1 other TRBD1 T cell receptor beta diversity 1 O - 20121230 -9606 28638 TRBC2 - TCRBC2 HGNC:12157|IMGT/GENE-DB:TRBC2 7 7q34 T cell receptor beta constant 2 other TRBC2 T cell receptor beta constant 2 O - 20121230 -9606 28639 TRBC1 - BV05S1J2.2|TCRBC1 HGNC:12156|IMGT/GENE-DB:TRBC1 7 7q34 T cell receptor beta constant 1 other TRBC1 T cell receptor beta constant 1 O - 20121230 -9606 28640 TRAV41 - TCRAV19S1|TCRAV41S1 HGNC:12142|IMGT/GENE-DB:TRAV41 14 14q11 T cell receptor alpha variable 41 other TRAV41 T cell receptor alpha variable 41 O - 20121230 -9606 28641 TRAV40 - TCRAV31S1|TCRAV40S1 HGNC:12141|IMGT/GENE-DB:TRAV40 14 14q11 T cell receptor alpha variable 40 other TRAV40 T cell receptor alpha variable 40 O - 20121230 -9606 28642 TRAV39 - TCRAV27S1|TCRAV39S1 HGNC:12139|IMGT/GENE-DB:TRAV39 14 14q11 T cell receptor alpha variable 39 other TRAV39 T cell receptor alpha variable 39 O - 20121230 -9606 28643 TRAV38-2DV8 - TCRAV14S1|TRAV382DV8|hADV38S2 HGNC:12138|IMGT/GENE-DB:TRAV38-2/DV8 14 14q11 T cell receptor alpha variable 38-2/delta variable 8 other TRAV38-2DV8 T cell receptor alpha variable 38-2/delta variable 8 O - 20121230 -9606 28644 TRAV38-1 - TCRAV14S2|TCRAV38S1|TRAV381 HGNC:12137|IMGT/GENE-DB:TRAV38-1 14 14q11 T cell receptor alpha variable 38-1 other TRAV38-1 T cell receptor alpha variable 38-1 O - 20121230 -9606 28645 TRAV37 - TCRAV37S1 HGNC:12136|IMGT/GENE-DB:TRAV37 14 14q11 T cell receptor alpha variable 37 (pseudogene) pseudo TRAV37 T cell receptor alpha variable 37 (pseudogene) O - 20121230 -9606 28646 TRAV36DV7 - TCRAV28S1|TRAV36/DV7|hADV36S1 HGNC:12135|IMGT/GENE-DB:TRAV36/DV7 14 14q11 T cell receptor alpha variable 36/delta variable 7 other TRAV36DV7 T cell receptor alpha variable 36/delta variable 7 O - 20121230 -9606 28647 TRAV35 - TCRAV25S1|TCRAV35S1 HGNC:12134|IMGT/GENE-DB:TRAV35 14 14q11 T cell receptor alpha variable 35 other TRAV35 T cell receptor alpha variable 35 O - 20121230 -9606 28648 TRAV34 - TCRAV26S1|TCRAV34S1 HGNC:12133|IMGT/GENE-DB:TRAV34 14 14q11 T cell receptor alpha variable 34 other TRAV34 T cell receptor alpha variable 34 O - 20121230 -9606 28649 TRAV33 - C14orf12|TCRAV33S1 HGNC:12132|IMGT/GENE-DB:TRAV33 14 14q11 T cell receptor alpha variable 33 (pseudogene) pseudo TRAV33 T cell receptor alpha variable 33 (pseudogene) O - 20121230 -9606 28650 TRAV32 - TCRAV32S1 HGNC:12131|IMGT/GENE-DB:TRAV32 14 14q11 T cell receptor alpha variable 32 (pseudogene) pseudo TRAV32 T cell receptor alpha variable 32 (pseudogene) O - 20121230 -9606 28651 TRAV31 - TCRAV31S1 HGNC:12130|IMGT/GENE-DB:TRAV31 14 14q11 T cell receptor alpha variable 31 (pseudogene) pseudo TRAV31 T cell receptor alpha variable 31 (pseudogene) O - 20121230 -9606 28652 TRAV30 - TCRAV29S1|TCRAV30S1 HGNC:12129|IMGT/GENE-DB:TRAV30 14 14q11 T cell receptor alpha variable 30 other TRAV30 T cell receptor alpha variable 30 O - 20121230 -9606 28653 TRAV29DV5 - TCRAV21S1|TRAV29/DV5|hADV29S1 HGNC:12127|IMGT/GENE-DB:TRAV29/DV5 14 14q11 T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene) other TRAV29DV5 T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene) O - 20121230 -9606 28654 TRAV28 - TCRAV28S1 HGNC:12126|IMGT/GENE-DB:TRAV28 14 14q11 T cell receptor alpha variable 28 (pseudogene) pseudo TRAV28 T cell receptor alpha variable 28 (pseudogene) O - 20121230 -9606 28655 TRAV27 - TCRAV10S1|TCRAV27S1 HGNC:12125|IMGT/GENE-DB:TRAV27 14 14q11 T cell receptor alpha variable 27 other TRAV27 T cell receptor alpha variable 27 O - 20121230 -9606 28656 TRAV26-2 - TCRAV26S2|TCRAV4S1|TRAV262 HGNC:12124|IMGT/GENE-DB:TRAV26-2 14 14q11 T cell receptor alpha variable 26-2 other TRAV26-2 T cell receptor alpha variable 26-2 O - 20121230 -9606 28657 TRAV26-1 - TCRAV26S1|TCRAV4S2|TRAV261 HGNC:12123|IMGT/GENE-DB:TRAV26-1 14 14q11 T cell receptor alpha variable 26-1 other TRAV26-1 T cell receptor alpha variable 26-1 O - 20121230 -9606 28658 TRAV25 - TCRAV25S1|TCRAV32S1 HGNC:12122|IMGT/GENE-DB:TRAV25 14 14q11 T cell receptor alpha variable 25 other TRAV25 T cell receptor alpha variable 25 O - 20121230 -9606 28659 TRAV24 - TCRAV18S1|TCRAV24S1 HGNC:12121|IMGT/GENE-DB:TRAV24 14 14q11 T cell receptor alpha variable 24 other TRAV24 T cell receptor alpha variable 24 O - 20121230 -9606 28660 TRAV23DV6 - TCRAV17S1|TRAV23/DV6|hADV23S1 HGNC:12120|IMGT/GENE-DB:TRAV23/DV6 14 14q11 T cell receptor alpha variable 23/delta variable 6 other TRAV23DV6 T cell receptor alpha variable 23/delta variable 6 O - 20121230 -9606 28661 TRAV22 - TCRAV13S1|TCRAV22S1 HGNC:12119|IMGT/GENE-DB:TRAV22 14 14q11 T cell receptor alpha variable 22 other TRAV22 T cell receptor alpha variable 22 O - 20121230 -9606 28662 TRAV21 - TCRAV21S1|TCRAV23S1 HGNC:12118|IMGT/GENE-DB:TRAV21 14 14q11 T cell receptor alpha variable 21 other TRAV21 T cell receptor alpha variable 21 O - 20121230 -9606 28663 TRAV20 - TCRAV20S1|TCRAV30S1 HGNC:12117|IMGT/GENE-DB:TRAV20 14 14q11 T cell receptor alpha variable 20 other TRAV20 T cell receptor alpha variable 20 O - 20121230 -9606 28664 TRAV19 - TCRAV12S1|TCRAV19S1 HGNC:12115|IMGT/GENE-DB:TRAV19 14 14q11 T cell receptor alpha variable 19 other TRAV19 T cell receptor alpha variable 19 O - 20121230 -9606 28665 TRAV18 - TCRAV18S1 HGNC:12114|IMGT/GENE-DB:TRAV18 14 14q11 T cell receptor alpha variable 18 other TRAV18 T cell receptor alpha variable 18 O - 20121230 -9606 28666 TRAV17 - TCRAV17S1|TCRAV3S1 HGNC:12113|IMGT/GENE-DB:TRAV17 14 14q11 T cell receptor alpha variable 17 other TRAV17 T cell receptor alpha variable 17 O - 20121230 -9606 28667 TRAV16 - TCRAV16S1|TCRAV9S1 HGNC:12112|IMGT/GENE-DB:TRAV16 14 14q11 T cell receptor alpha variable 16 other TRAV16 T cell receptor alpha variable 16 O - 20121230 -9606 28668 TRAV15 - TCRAV15S1 HGNC:12111|IMGT/GENE-DB:TRAV15 14 14q11 T cell receptor alpha variable 15 (pseudogene) pseudo TRAV15 T cell receptor alpha variable 15 (pseudogene) O - 20121230 -9606 28669 TRAV14DV4 - TCRAV6S1-hDV104S1|TRAV14/DV4|hADV14S1 HGNC:12110|IMGT/GENE-DB:TRAV14/DV4 14 14q11 T cell receptor alpha variable 14/delta variable 4 other TRAV14DV4 T cell receptor alpha variable 14/delta variable 4 O - 20121230 -9606 28670 TRAV13-2 - TCRAV13S2|TCRAV8S2|TRAV132 HGNC:12109|IMGT/GENE-DB:TRAV13-2 14 14q11 T cell receptor alpha variable 13-2 other TRAV13-2 T cell receptor alpha variable 13-2 O - 20121230 -9606 28671 TRAV13-1 - TCRAV13S1|TCRAV8S1|TRAV131 HGNC:12108|IMGT/GENE-DB:TRAV13-1 14 14q11 T cell receptor alpha variable 13-1 other TRAV13-1 T cell receptor alpha variable 13-1 O - 20121230 -9606 28672 TRAV12-3 - TCRAV12S3|TCRAV2S2|TRAV123 HGNC:12107|IMGT/GENE-DB:TRAV12-3 14 14q11 T cell receptor alpha variable 12-3 other TRAV12-3 T cell receptor alpha variable 12-3 O - 20121230 -9606 28673 TRAV12-2 - TCRAV12S2|TCRAV2S1|TRAV122 HGNC:12106|IMGT/GENE-DB:TRAV12-2 14 14q11 T cell receptor alpha variable 12-2 other TRAV12-2 T cell receptor alpha variable 12-2 O - 20121230 -9606 28674 TRAV12-1 - TCRAV12S1|TCRAV2S3|TRAV121 HGNC:12105|IMGT/GENE-DB:TRAV12-1 14 14q11 T cell receptor alpha variable 12-1 other TRAV12-1 T cell receptor alpha variable 12-1 O - 20121230 -9606 28675 TRAV11 - TCRAV11S1 HGNC:12104|IMGT/GENE-DB:TRAV11 14 14q11 T cell receptor alpha variable 11 (pseudogene) pseudo TRAV11 T cell receptor alpha variable 11 (pseudogene) O - 20121230 -9606 28676 TRAV10 - TCRAV10S1|TCRAV24S1 HGNC:12103|IMGT/GENE-DB:TRAV10 14 14q11 T cell receptor alpha variable 10 other TRAV10 T cell receptor alpha variable 10 O - 20121230 -9606 28677 TRAV9-2 - TCRAV22S1|TCRAV9S2|TRAV92 HGNC:12154|IMGT/GENE-DB:TRAV9-2 14 14q11 T cell receptor alpha variable 9-2 other TRAV9-2 T cell receptor alpha variable 9-2 O - 20121230 -9606 28678 TRAV9-1 - TCRAV9S1|TRAV91 HGNC:12153|IMGT/GENE-DB:TRAV9-1 14 14q11 T cell receptor alpha variable 9-1 other TRAV9-1 T cell receptor alpha variable 9-1 O - 20121230 -9606 28679 TRAV8-7 - TCRAV8S7|TRAV87 HGNC:12152|IMGT/GENE-DB:TRAV8-7 14 14q11 T cell receptor alpha variable 8-7 (non-functional) other TRAV8-7 T cell receptor alpha variable 8-7 (non-functional) O - 20121230 -9606 28680 TRAV8-6 - TCRAV1S3|TCRAV8S6|TRAV86 HGNC:12151|IMGT/GENE-DB:TRAV8-6 14 14q11 T cell receptor alpha variable 8-6 other TRAV8-6 T cell receptor alpha variable 8-6 O - 20121230 -9606 28681 TRAV8-5 - TCRAV8S5|TRAV85 HGNC:12150|IMGT/GENE-DB:TRAV8-5 14 14q11 T cell receptor alpha variable 8-5 (pseudogene) pseudo TRAV8-5 T cell receptor alpha variable 8-5 (pseudogene) O - 20121230 -9606 28682 TRAV8-4 - TCRAV1S2|TCRAV8S4|TRAV84 HGNC:12149|IMGT/GENE-DB:TRAV8-4 14 14q11 T cell receptor alpha variable 8-4 other TRAV8-4 T cell receptor alpha variable 8-4 O - 20121230 -9606 28683 TRAV8-3 - TCRAV1S4|TCRAV8S3|TRAV83 HGNC:12148|IMGT/GENE-DB:TRAV8-3 14 14q11 T cell receptor alpha variable 8-3 other TRAV8-3 T cell receptor alpha variable 8-3 O - 20121230 -9606 28684 TRAV8-2 - TCRAV1S5|TCRAV8S2|TRAV82 HGNC:12147|IMGT/GENE-DB:TRAV8-2 14 14q11 T cell receptor alpha variable 8-2 other TRAV8-2 T cell receptor alpha variable 8-2 O - 20121230 -9606 28685 TRAV8-1 - TCRAV1S1|TCRAV8S1|TRAV81 HGNC:12146|IMGT/GENE-DB:TRAV8-1 14 14q11 T cell receptor alpha variable 8-1 other TRAV8-1 T cell receptor alpha variable 8-1 O - 20121230 -9606 28686 TRAV7 - TCRAV7S1 HGNC:12145|IMGT/GENE-DB:TRAV7 14 14q11 T cell receptor alpha variable 7 other TRAV7 T cell receptor alpha variable 7 O - 20121230 -9606 28688 TRAV5 - TCRAV15S1|TCRAV5S1 HGNC:12143|IMGT/GENE-DB:TRAV5 14 14q11 T cell receptor alpha variable 5 other TRAV5 T cell receptor alpha variable 5 O - 20121230 -9606 28689 TRAV4 - TCRAV20S1|TCRAV4S1 HGNC:12140|IMGT/GENE-DB:TRAV4 14 14q11 T cell receptor alpha variable 4 other TRAV4 T cell receptor alpha variable 4 O - 20121230 -9606 28690 TRAV3 - TCRAV16S1|TCRAV3S1 HGNC:12128|IMGT/GENE-DB:TRAV3 14 14q11 T cell receptor alpha variable 3 (gene/pseudogene) other TRAV3 T cell receptor alpha variable 3 (gene/pseudogene) O - 20121230 -9606 28691 TRAV2 - TCRAV11S1|TCRAV2S1 HGNC:12116|IMGT/GENE-DB:TRAV2 14 14q11 T cell receptor alpha variable 2 other TRAV2 T cell receptor alpha variable 2 O - 20121230 -9606 28692 TRAV1-2 - TCRAV1S2|TCRAV7S2|TRAV12 HGNC:12102|IMGT/GENE-DB:TRAV1-2 14 14q11 T cell receptor alpha variable 1-2 other TRAV1-2 T cell receptor alpha variable 1-2 O - 20121230 -9606 28693 TRAV1-1 - TCRAV1S1|TCRAV7S1|TRAV11 HGNC:12101|IMGT/GENE-DB:TRAV1-1 14 14q11 T cell receptor alpha variable 1-1 other TRAV1-1 T cell receptor alpha variable 1-1 O - 20121230 -9606 28694 TRAJ61 - - HGNC:12094|IMGT/GENE-DB:TRAJ61 14 14q11 T cell receptor alpha joining 61 (non-functional) other TRAJ61 T cell receptor alpha joining 61 (non-functional) O - 20121230 -9606 28695 TRAJ60 - - HGNC:12093|IMGT/GENE-DB:TRAJ60 14 14q11 T cell receptor alpha joining 60 (pseudogene) pseudo TRAJ60 T cell receptor alpha joining 60 (pseudogene) O - 20121230 -9606 28696 TRAJ59 - - HGNC:12091|IMGT/GENE-DB:TRAJ59 14 14q11 T cell receptor alpha joining 59 (non-functional) other TRAJ59 T cell receptor alpha joining 59 (non-functional) O - 20121230 -9606 28697 TRAJ58 - - HGNC:12090|IMGT/GENE-DB:TRAJ58 14 14q11 T cell receptor alpha joining 58 (non-functional) other TRAJ58 T cell receptor alpha joining 58 (non-functional) O - 20121230 -9606 28698 TRAJ57 - - HGNC:12089|IMGT/GENE-DB:TRAJ57 14 14q11 T cell receptor alpha joining 57 other TRAJ57 T cell receptor alpha joining 57 O - 20121230 -9606 28699 TRAJ56 - - HGNC:12088|IMGT/GENE-DB:TRAJ56 14 14q11 T cell receptor alpha joining 56 other TRAJ56 T cell receptor alpha joining 56 O - 20121230 -9606 28700 TRAJ55 - - HGNC:12087|IMGT/GENE-DB:TRAJ55 14 14q11 T cell receptor alpha joining 55 (pseudogene) pseudo TRAJ55 T cell receptor alpha joining 55 (pseudogene) O - 20121230 -9606 28701 TRAJ54 - - HGNC:12086|IMGT/GENE-DB:TRAJ54 14 14q11 T cell receptor alpha joining 54 other TRAJ54 T cell receptor alpha joining 54 O - 20121230 -9606 28702 TRAJ53 - - HGNC:12085|IMGT/GENE-DB:TRAJ53 14 14q11 T cell receptor alpha joining 53 other TRAJ53 T cell receptor alpha joining 53 O - 20121230 -9606 28703 TRAJ52 - - HGNC:12084|IMGT/GENE-DB:TRAJ52 14 14q11 T cell receptor alpha joining 52 other TRAJ52 T cell receptor alpha joining 52 O - 20121230 -9606 28704 TRAJ51 - - HGNC:12083|IMGT/GENE-DB:TRAJ51 14 14q11 T cell receptor alpha joining 51 (pseudogene) pseudo TRAJ51 T cell receptor alpha joining 51 (pseudogene) O - 20121230 -9606 28705 TRAJ50 - - HGNC:12082|IMGT/GENE-DB:TRAJ50 14 14q11 T cell receptor alpha joining 50 other TRAJ50 T cell receptor alpha joining 50 O - 20121230 -9606 28706 TRAJ49 - - HGNC:12080|IMGT/GENE-DB:TRAJ49 14 14q11 T cell receptor alpha joining 49 other TRAJ49 T cell receptor alpha joining 49 O - 20121230 -9606 28707 TRAJ48 - - HGNC:12079|IMGT/GENE-DB:TRAJ48 14 14q11 T cell receptor alpha joining 48 other TRAJ48 T cell receptor alpha joining 48 O - 20121230 -9606 28708 TRAJ47 - - HGNC:12078|IMGT/GENE-DB:TRAJ47 14 14q11 T cell receptor alpha joining 47 other TRAJ47 T cell receptor alpha joining 47 O - 20121230 -9606 28709 TRAJ46 - - HGNC:12077|IMGT/GENE-DB:TRAJ46 14 14q11 T cell receptor alpha joining 46 other TRAJ46 T cell receptor alpha joining 46 O - 20121230 -9606 28710 TRAJ45 - - HGNC:12076|IMGT/GENE-DB:TRAJ45 14 14q11 T cell receptor alpha joining 45 other TRAJ45 T cell receptor alpha joining 45 O - 20121230 -9606 28711 TRAJ44 - - HGNC:12075|IMGT/GENE-DB:TRAJ44 14 14q11 T cell receptor alpha joining 44 other TRAJ44 T cell receptor alpha joining 44 O - 20121230 -9606 28712 TRAJ43 - - HGNC:12074|IMGT/GENE-DB:TRAJ43 14 14q11 T cell receptor alpha joining 43 other TRAJ43 T cell receptor alpha joining 43 O - 20121230 -9606 28713 TRAJ42 - - HGNC:12073|IMGT/GENE-DB:TRAJ42 14 14q11 T cell receptor alpha joining 42 other TRAJ42 T cell receptor alpha joining 42 O - 20121230 -9606 28714 TRAJ41 - - HGNC:12072|IMGT/GENE-DB:TRAJ41 14 14q11 T cell receptor alpha joining 41 other TRAJ41 T cell receptor alpha joining 41 O - 20121230 -9606 28715 TRAJ40 - - HGNC:12071|IMGT/GENE-DB:TRAJ40 14 14q11 T cell receptor alpha joining 40 other TRAJ40 T cell receptor alpha joining 40 O - 20121230 -9606 28716 TRAJ39 - - HGNC:12069|IMGT/GENE-DB:TRAJ39 14 14q11 T cell receptor alpha joining 39 other TRAJ39 T cell receptor alpha joining 39 O - 20121230 -9606 28717 TRAJ38 - - HGNC:12068|IMGT/GENE-DB:TRAJ38 14 14q11 T cell receptor alpha joining 38 other TRAJ38 T cell receptor alpha joining 38 O - 20121230 -9606 28718 TRAJ37 - - HGNC:12067|IMGT/GENE-DB:TRAJ37 14 14q11 T cell receptor alpha joining 37 other TRAJ37 T cell receptor alpha joining 37 O - 20121230 -9606 28719 TRAJ36 - - HGNC:12066|IMGT/GENE-DB:TRAJ36 14 14q11 T cell receptor alpha joining 36 other TRAJ36 T cell receptor alpha joining 36 O - 20121230 -9606 28720 TRAJ35 - - HGNC:12065|IMGT/GENE-DB:TRAJ35 14 14q11 T cell receptor alpha joining 35 (non-functional) other TRAJ35 T cell receptor alpha joining 35 (non-functional) O - 20121230 -9606 28721 TRAJ34 - - HGNC:12064|IMGT/GENE-DB:TRAJ34 14 14q11 T cell receptor alpha joining 34 other TRAJ34 T cell receptor alpha joining 34 O - 20121230 -9606 28722 TRAJ33 - - HGNC:12063|IMGT/GENE-DB:TRAJ33 14 14q11 T cell receptor alpha joining 33 other TRAJ33 T cell receptor alpha joining 33 O - 20121230 -9606 28723 TRAJ32 - - HGNC:12062|IMGT/GENE-DB:TRAJ32 14 14q11 T cell receptor alpha joining 32 other TRAJ32 T cell receptor alpha joining 32 O - 20121230 -9606 28724 TRAJ31 - - HGNC:12061|IMGT/GENE-DB:TRAJ31 14 14q11 T cell receptor alpha joining 31 other TRAJ31 T cell receptor alpha joining 31 O - 20121230 -9606 28725 TRAJ30 - - HGNC:12060|IMGT/GENE-DB:TRAJ30 14 14q11 T cell receptor alpha joining 30 other TRAJ30 T cell receptor alpha joining 30 O - 20121230 -9606 28726 TRAJ29 - - HGNC:12058|IMGT/GENE-DB:TRAJ29 14 14q11 T cell receptor alpha joining 29 other TRAJ29 T cell receptor alpha joining 29 O - 20121230 -9606 28727 TRAJ28 - - HGNC:12057|IMGT/GENE-DB:TRAJ28 14 14q11 T cell receptor alpha joining 28 other TRAJ28 T cell receptor alpha joining 28 O - 20121230 -9606 28728 TRAJ27 - - HGNC:12056|IMGT/GENE-DB:TRAJ27 14 14q11 T cell receptor alpha joining 27 other TRAJ27 T cell receptor alpha joining 27 O - 20121230 -9606 28729 TRAJ26 - - HGNC:12055|IMGT/GENE-DB:TRAJ26 14 14q11 T cell receptor alpha joining 26 other TRAJ26 T cell receptor alpha joining 26 O - 20121230 -9606 28730 TRAJ25 - - HGNC:12054|IMGT/GENE-DB:TRAJ25 14 14q11 T cell receptor alpha joining 25 (non-functional) other TRAJ25 T cell receptor alpha joining 25 (non-functional) O - 20121230 -9606 28731 TRAJ24 - - HGNC:12053|IMGT/GENE-DB:TRAJ24 14 14q11 T cell receptor alpha joining 24 other TRAJ24 T cell receptor alpha joining 24 O - 20121230 -9606 28732 TRAJ23 - - HGNC:12052|IMGT/GENE-DB:TRAJ23 14 14q11 T cell receptor alpha joining 23 other TRAJ23 T cell receptor alpha joining 23 O - 20121230 -9606 28733 TRAJ22 - - HGNC:12051|IMGT/GENE-DB:TRAJ22 14 14q11 T cell receptor alpha joining 22 other TRAJ22 T cell receptor alpha joining 22 O - 20121230 -9606 28734 TRAJ21 - - HGNC:12050|IMGT/GENE-DB:TRAJ21 14 14q11 T cell receptor alpha joining 21 other TRAJ21 T cell receptor alpha joining 21 O - 20121230 -9606 28735 TRAJ20 - - HGNC:12049|IMGT/GENE-DB:TRAJ20 14 14q11 T cell receptor alpha joining 20 other TRAJ20 T cell receptor alpha joining 20 O - 20121230 -9606 28736 TRAJ19 - - HGNC:12047|IMGT/GENE-DB:TRAJ19 14 14q11 T cell receptor alpha joining 19 (non-functional) other TRAJ19 T cell receptor alpha joining 19 (non-functional) O - 20121230 -9606 28737 TRAJ18 - - HGNC:12046|IMGT/GENE-DB:TRAJ18 14 14q11 T cell receptor alpha joining 18 other TRAJ18 T cell receptor alpha joining 18 O - 20121230 -9606 28738 TRAJ17 - - HGNC:12045|IMGT/GENE-DB:TRAJ17 14 14q11 T cell receptor alpha joining 17 other TRAJ17 T cell receptor alpha joining 17 O - 20121230 -9606 28739 TRAJ16 - - HGNC:12044|IMGT/GENE-DB:TRAJ16 14 14q11 T cell receptor alpha joining 16 other TRAJ16 T cell receptor alpha joining 16 O - 20121230 -9606 28740 TRAJ15 - - HGNC:12043|IMGT/GENE-DB:TRAJ15 14 14q11 T cell receptor alpha joining 15 other TRAJ15 T cell receptor alpha joining 15 O - 20121230 -9606 28741 TRAJ14 - - HGNC:12042|IMGT/GENE-DB:TRAJ14 14 14q11 T cell receptor alpha joining 14 other TRAJ14 T cell receptor alpha joining 14 O - 20121230 -9606 28742 TRAJ13 - - HGNC:12041|IMGT/GENE-DB:TRAJ13 14 14q11 T cell receptor alpha joining 13 other TRAJ13 T cell receptor alpha joining 13 O - 20121230 -9606 28743 TRAJ12 - - HGNC:12040|IMGT/GENE-DB:TRAJ12 14 14q11 T cell receptor alpha joining 12 other TRAJ12 T cell receptor alpha joining 12 O - 20121230 -9606 28744 TRAJ11 - - HGNC:12039|IMGT/GENE-DB:TRAJ11 14 14q11 T cell receptor alpha joining 11 other TRAJ11 T cell receptor alpha joining 11 O - 20121230 -9606 28745 TRAJ10 - - HGNC:12038|IMGT/GENE-DB:TRAJ10 14 14q11 T cell receptor alpha joining 10 other TRAJ10 T cell receptor alpha joining 10 O - 20121230 -9606 28746 TRAJ9 - - HGNC:12097|IMGT/GENE-DB:TRAJ9 14 14q11 T cell receptor alpha joining 9 other TRAJ9 T cell receptor alpha joining 9 O - 20121230 -9606 28747 TRAJ8 - - HGNC:12096|IMGT/GENE-DB:TRAJ8 14 14q11 T cell receptor alpha joining 8 other TRAJ8 T cell receptor alpha joining 8 O - 20121230 -9606 28748 TRAJ7 - - HGNC:12095|IMGT/GENE-DB:TRAJ7 14 14q11 T cell receptor alpha joining 7 other TRAJ7 T cell receptor alpha joining 7 O - 20121230 -9606 28749 TRAJ6 - - HGNC:12092|IMGT/GENE-DB:TRAJ6 14 14q11 T cell receptor alpha joining 6 other TRAJ6 T cell receptor alpha joining 6 O - 20121230 -9606 28750 TRAJ5 - - HGNC:12081|IMGT/GENE-DB:TRAJ5 14 14q11 T cell receptor alpha joining 5 other TRAJ5 T cell receptor alpha joining 5 O - 20121230 -9606 28751 TRAJ4 - - HGNC:12070|IMGT/GENE-DB:TRAJ4 14 14q11 T cell receptor alpha joining 4 other TRAJ4 T cell receptor alpha joining 4 O - 20121230 -9606 28752 TRAJ3 - - HGNC:12059|IMGT/GENE-DB:TRAJ3 14 14q11 T cell receptor alpha joining 3 other TRAJ3 T cell receptor alpha joining 3 O - 20121230 -9606 28753 TRAJ2 - - HGNC:12048|IMGT/GENE-DB:TRAJ2 14 14q11 T cell receptor alpha joining 2 (non-functional) other TRAJ2 T cell receptor alpha joining 2 (non-functional) O - 20121230 -9606 28754 TRAJ1 - - HGNC:12037|IMGT/GENE-DB:TRAJ1 14 14q11 T cell receptor alpha joining 1 (non-functional) other TRAJ1 T cell receptor alpha joining 1 (non-functional) O - 20121230 -9606 28755 TRAC - TCRA HGNC:12029|IMGT/GENE-DB:TRAC 14 14q11 T cell receptor alpha constant other TRAC T cell receptor alpha constant O - 20121230 -9606 28756 IGLV8OR8-1 - IGLV8/OR8-1|IGLV8OR81 HGNC:5932|IMGT/GENE-DB:IGLV8/OR8-1 8 8q11.2 immunoglobulin lambda variable 8/OR8-1 (pseudogene) pseudo IGLV8OR8-1 immunoglobulin lambda variable 8/OR8-1 (pseudogene) O - 20121021 -9606 28757 IGLVV-66 - IGLV(V)-66|IGLVV66|V5-5P HGNC:5946|IMGT/GENE-DB:IGLV(V)-66 22 22q11.2 immunoglobulin lambda variable (V)-66 (pseudogene) pseudo IGLVV-66 immunoglobulin lambda variable (V)-66 (pseudogene) O - 20121230 -9606 28758 IGLVV-58 - IGLV(V)-58|IGLVV58|V5-3P HGNC:5945|IMGT/GENE-DB:IGLV(V)-58 22 22q11.2 immunoglobulin lambda variable (V)-58 (pseudogene) pseudo IGLVV-58 immunoglobulin lambda variable (V)-58 (pseudogene) O - 20121230 -9606 28759 IGLVIV-65 - IGLV(IV)-65|IGLVIV65|V4-9P HGNC:5944|IMGT/GENE-DB:IGLV(IV)-65 22 22q11.2 immunoglobulin lambda variable (IV)-65 (pseudogene) pseudo IGLVIV-65 immunoglobulin lambda variable (IV)-65 (pseudogene) O - 20121230 -9606 28760 IGLVIV-64 - IGLV(IV)-64|IGLVIV64|V4-8P HGNC:5943|IMGT/GENE-DB:IGLV(IV)-64 22 22q11.2 immunoglobulin lambda variable (IV)-64 (pseudogene) pseudo IGLVIV-64 immunoglobulin lambda variable (IV)-64 (pseudogene) O - 20121230 -9606 28761 IGLVIV-59 - IGLV(IV)-59|IGLVIV59|V4-7P HGNC:5942|IMGT/GENE-DB:IGLV(IV)-59 22 22q11.2 immunoglobulin lambda variable (IV)-59 (pseudogene) pseudo IGLVIV-59 immunoglobulin lambda variable (IV)-59 (pseudogene) O - 20121230 -9606 28762 IGLVIV-53 - IGLV(IV)-53|IGLVIV53|V4-5P HGNC:5941|IMGT/GENE-DB:IGLV(IV)-53 22 22q11.2 immunoglobulin lambda variable (IV)-53 (pseudogene) pseudo IGLVIV-53 immunoglobulin lambda variable (IV)-53 (pseudogene) O - 20121230 -9606 28763 IGLVI-70 - IGLV(I)-70|IGLVI70|V1-27P HGNC:5940|IMGT/GENE-DB:IGLV(I)-70 22 22q11.2 immunoglobulin lambda variable (I)-70 (pseudogene) pseudo IGLVI-70 immunoglobulin lambda variable (I)-70 (pseudogene) O - 20121230 -9606 28764 IGLVI-68 - IGLV(I)-68|IGLVI68|V1-26P HGNC:5939|IMGT/GENE-DB:IGLV(I)-68 22 22q11.2 immunoglobulin lambda variable (I)-68 (pseudogene) pseudo IGLVI-68 immunoglobulin lambda variable (I)-68 (pseudogene) O - 20121230 -9606 28765 IGLVI-63 - IGLV(I)-63|IGLVI63|V1-24P HGNC:5938|IMGT/GENE-DB:IGLV(I)-63 22 22q11.2 immunoglobulin lambda variable (I)-63 (pseudogene) pseudo IGLVI-63 immunoglobulin lambda variable (I)-63 (pseudogene) O - 20121230 -9606 28766 IGLVI-56 - IGLV(I)-56|IGLVI56|V1-21P HGNC:5937|IMGT/GENE-DB:IGLV(I)-56 22 22q11.2 immunoglobulin lambda variable (I)-56 (pseudogene) pseudo IGLVI-56 immunoglobulin lambda variable (I)-56 (pseudogene) O - 20121230 -9606 28767 IGLVI-42 - IGLV(I)-42|IGLVI42|V1-15P HGNC:5936|IMGT/GENE-DB:IGLV(I)-42 22 22q11.2 immunoglobulin lambda variable (I)-42 (pseudogene) pseudo IGLVI-42 immunoglobulin lambda variable (I)-42 (pseudogene) O - 20121230 -9606 28768 IGLVI-38 - IGLV(I)-38|IGLVI38|V1-12P HGNC:5935|IMGT/GENE-DB:IGLV(I)-38 22 22q11.2 immunoglobulin lambda variable (I)-38 (pseudogene) pseudo IGLVI-38 immunoglobulin lambda variable (I)-38 (pseudogene) O - 20121230 -9606 28769 IGLVI-20 - IGLV(I)-20|IGLVI20|V1-6P HGNC:5934|IMGT/GENE-DB:IGLV(I)-20 22 22q11.2 immunoglobulin lambda variable (I)-20 (pseudogene) pseudo IGLVI-20 immunoglobulin lambda variable (I)-20 (pseudogene) O - 20121230 -9606 28770 IGLV11-55 - IGLV1155|V4-6 HGNC:5886|IMGT/GENE-DB:IGLV11-55 22 22q11.2 immunoglobulin lambda variable 11-55 (non-functional) other IGLV11-55 immunoglobulin lambda variable 11-55 (non-functional) O - 20121230 -9606 28771 IGLV10-67 - IGLV1067|V1-25P HGNC:5885|IMGT/GENE-DB:IGLV10-67 22 22q11.2 immunoglobulin lambda variable 10-67 (pseudogene) pseudo IGLV10-67 immunoglobulin lambda variable 10-67 (pseudogene) O - 20121230 -9606 28772 IGLV10-54 - IGLV1054|V1-20 HGNC:5884|IMGT/GENE-DB:IGLV10-54 22 22q11.2 immunoglobulin lambda variable 10-54 other IGLV10-54 immunoglobulin lambda variable 10-54 O - 20121230 -9606 28773 IGLV9-49 - IGLV949|V5-2 HGNC:5933|IMGT/GENE-DB:IGLV9-49 22 22q11.2 immunoglobulin lambda variable 9-49 other IGLV9-49 immunoglobulin lambda variable 9-49 O - 20121230 -9606 28774 IGLV8-61 - IGLV861|V3-4 HGNC:5931|IMGT/GENE-DB:IGLV8-61 22 22q11.2 immunoglobulin lambda variable 8-61 other IGLV8-61 immunoglobulin lambda variable 8-61 O - 20121230 -9606 28775 IGLV7-46 - IGLV746|V3-3 HGNC:5930|IMGT/GENE-DB:IGLV7-46 22 22q11.2 immunoglobulin lambda variable 7-46 (gene/pseudogene) other IGLV7-46 immunoglobulin lambda variable 7-46 (gene/pseudogene) O - 20121230 -9606 28776 IGLV7-43 - IGLV743|V3-2 HGNC:5929|IMGT/GENE-DB:IGLV7-43 22 22q11.2 immunoglobulin lambda variable 7-43 other IGLV7-43 immunoglobulin lambda variable 7-43 O - 20121230 -9606 28777 IGLV7-35 - IGLV735|V3-1P HGNC:5928|IMGT/GENE-DB:IGLV7-35 22 22q11.2 immunoglobulin lambda variable 7-35 (pseudogene) pseudo IGLV7-35 immunoglobulin lambda variable 7-35 (pseudogene) O - 20121230 -9606 28778 IGLV6-57 - IGLV657|V1-22 HGNC:5927|IMGT/GENE-DB:IGLV6-57 22 22q11.2 immunoglobulin lambda variable 6-57 other IGLV6-57 immunoglobulin lambda variable 6-57 O - 20121230 -9606 28779 IGLV5-52 - IGLV552|V4-4 HGNC:5926|IMGT/GENE-DB:IGLV5-52 22 22q11.2 immunoglobulin lambda variable 5-52 other IGLV5-52 immunoglobulin lambda variable 5-52 O - 20121230 -9606 28780 IGLV5-48 - IGLV548|V4-3 HGNC:5925|IMGT/GENE-DB:IGLV5-48 22 22q11.2 immunoglobulin lambda variable 5-48 (non-functional) other IGLV5-48 immunoglobulin lambda variable 5-48 (non-functional) O - 20121230 -9606 28781 IGLV5-45 - IGLV545|V4-2 HGNC:5924|IMGT/GENE-DB:IGLV5-45 22 22q11.2 immunoglobulin lambda variable 5-45 other IGLV5-45 immunoglobulin lambda variable 5-45 O - 20121230 -9606 28782 IGLV5-39 - IGLV539 HGNC:5923|IMGT/GENE-DB:IGLV5-39 22 22q11.2 immunoglobulin lambda variable 5-39 other IGLV5-39 immunoglobulin lambda variable 5-39 O - 20111109 -9606 28783 IGLV5-37 - IGLV537|V4-1 HGNC:5922|IMGT/GENE-DB:IGLV5-37 22 22q11.2 immunoglobulin lambda variable 5-37 other IGLV5-37 immunoglobulin lambda variable 5-37 O - 20121230 -9606 28784 IGLV4-69 - IGLV469|V5-6 HGNC:5921|IMGT/GENE-DB:IGLV4-69 22 22q11.2 immunoglobulin lambda variable 4-69 other IGLV4-69 immunoglobulin lambda variable 4-69 O - 20121230 -9606 28785 IGLV4-60 - IGLV460|V5-4 HGNC:5920|IMGT/GENE-DB:IGLV4-60 22 22q11.2 immunoglobulin lambda variable 4-60 other IGLV4-60 immunoglobulin lambda variable 4-60 O - 20121230 -9606 28786 IGLV4-3 - IGLV43|V5-1 HGNC:5919|IMGT/GENE-DB:IGLV4-3 22 22q11.2 immunoglobulin lambda variable 4-3 other IGLV4-3 immunoglobulin lambda variable 4-3 O - 20121230 -9606 28787 IGLV3-32 - IGLV332|V2-23P HGNC:5914|IMGT/GENE-DB:IGLV3-32 22 22q11.2 immunoglobulin lambda variable 3-32 (non-functional) other IGLV3-32 immunoglobulin lambda variable 3-32 (non-functional) O - 20121230 -9606 28788 IGLV3-31 - IGLV331|V2-22P HGNC:5913|IMGT/GENE-DB:IGLV3-31 22 22q11.2 immunoglobulin lambda variable 3-31 (pseudogene) pseudo IGLV3-31 immunoglobulin lambda variable 3-31 (pseudogene) O - 20121230 -9606 28789 IGLV3-30 - IGLV330|V2-21P HGNC:5912|IMGT/GENE-DB:IGLV3-30 22 22q11.2 immunoglobulin lambda variable 3-30 (pseudogene) pseudo IGLV3-30 immunoglobulin lambda variable 3-30 (pseudogene) O - 20121230 -9606 28790 IGLV3-29 - IGLV329 HGNC:5911|IMGT/GENE-DB:IGLV3-29 22 22q11.2 immunoglobulin lambda variable 3-29 (pseudogene) pseudo IGLV3-29 immunoglobulin lambda variable 3-29 (pseudogene) O - 20121230 -9606 28791 IGLV3-27 - IGLV327|V2-19 HGNC:5910|IMGT/GENE-DB:IGLV3-27 22 22q11.2 immunoglobulin lambda variable 3-27 other IGLV3-27 immunoglobulin lambda variable 3-27 O - 20121230 -9606 28792 IGLV3-26 - IGLV326|V2-18P HGNC:5909|IMGT/GENE-DB:IGLV3-26 22 22q11.2 immunoglobulin lambda variable 3-26 (pseudogene) pseudo IGLV3-26 immunoglobulin lambda variable 3-26 (pseudogene) O - 20121230 -9606 28793 IGLV3-25 - IGLV325|V2-17 HGNC:5908|IMGT/GENE-DB:IGLV3-25 22 22q11.2 immunoglobulin lambda variable 3-25 other IGLV3-25 immunoglobulin lambda variable 3-25 O - 20121230 -9606 28794 IGLV3-24 - IGLV324|V2-16P HGNC:5907|IMGT/GENE-DB:IGLV3-24 22 22q11.2 immunoglobulin lambda variable 3-24 (pseudogene) pseudo IGLV3-24 immunoglobulin lambda variable 3-24 (pseudogene) O - 20121230 -9606 28795 IGLV3-22 - IGLV322|V2-15 HGNC:5906|IMGT/GENE-DB:IGLV3-22 22 22q11.2 immunoglobulin lambda variable 3-22 (gene/pseudogene) other IGLV3-22 immunoglobulin lambda variable 3-22 (gene/pseudogene) O - 20121230 -9606 28796 IGLV3-21 - IGLV321|V2-14 HGNC:5905|IMGT/GENE-DB:IGLV3-21 22 22q11.2 immunoglobulin lambda variable 3-21 other IGLV3-21 immunoglobulin lambda variable 3-21 O - 20121230 -9606 28797 IGLV3-19 - IGLV319|V2-13|VL3L HGNC:5903|IMGT/GENE-DB:IGLV3-19 22 22q11.2 immunoglobulin lambda variable 3-19 other IGLV3-19 immunoglobulin lambda variable 3-19 O - 20121230 -9606 28798 IGLV3-17 - IGLV317|V2-12P HGNC:5902|IMGT/GENE-DB:IGLV3-17 22 22q11.2 immunoglobulin lambda variable 3-17 (pseudogene) pseudo IGLV3-17 immunoglobulin lambda variable 3-17 (pseudogene) O - 20121230 -9606 28799 IGLV3-16 - IGLV316|V2-11 HGNC:5901|IMGT/GENE-DB:IGLV3-16 22 22q11.2 immunoglobulin lambda variable 3-16 other IGLV3-16 immunoglobulin lambda variable 3-16 O - 20121230 -9606 28800 IGLV3-15 - IGLV315|V2-10P HGNC:5900|IMGT/GENE-DB:IGLV3-15 22 22q11.2 immunoglobulin lambda variable 3-15 (pseudogene) pseudo IGLV3-15 immunoglobulin lambda variable 3-15 (pseudogene) O - 20121230 -9606 28801 IGLV3-13 - IGLV313|V2-9P HGNC:5899|IMGT/GENE-DB:IGLV3-13 22 22q11.2 immunoglobulin lambda variable 3-13 (pseudogene) pseudo IGLV3-13 immunoglobulin lambda variable 3-13 (pseudogene) O - 20121230 -9606 28802 IGLV3-12 - IGLV312|V2-8 HGNC:5898|IMGT/GENE-DB:IGLV3-12 22 22q11.2 immunoglobulin lambda variable 3-12 other IGLV3-12 immunoglobulin lambda variable 3-12 O - 20121230 -9606 28803 IGLV3-10 - IGLV310|V2-7 HGNC:5897|IMGT/GENE-DB:IGLV3-10 22 22q11.2 immunoglobulin lambda variable 3-10 other IGLV3-10 immunoglobulin lambda variable 3-10 O - 20121230 -9606 28804 IGLV3-9 - IGLV39|V2-6 HGNC:5918|IMGT/GENE-DB:IGLV3-9 22 22q11.2 immunoglobulin lambda variable 3-9 (gene/pseudogene) other IGLV3-9 immunoglobulin lambda variable 3-9 (gene/pseudogene) O - 20121230 -9606 28805 IGLV3-7 - IGLV37|V2-5P HGNC:5917|IMGT/GENE-DB:IGLV3-7 22 22q11.2 immunoglobulin lambda variable 3-7 (pseudogene) pseudo IGLV3-7 immunoglobulin lambda variable 3-7 (pseudogene) O - 20121230 -9606 28806 IGLV3-6 - IGLV36|V2-4P HGNC:5916|IMGT/GENE-DB:IGLV3-6 22 22q11.2 immunoglobulin lambda variable 3-6 (pseudogene) pseudo IGLV3-6 immunoglobulin lambda variable 3-6 (pseudogene) O - 20121230 -9606 28807 IGLV3-4 - IGLV34|V2-3P HGNC:5915|IMGT/GENE-DB:IGLV3-4 22 22q11.2 immunoglobulin lambda variable 3-4 (pseudogene) pseudo IGLV3-4 immunoglobulin lambda variable 3-4 (pseudogene) O - 20121230 -9606 28808 IGLV3-2 - IGLV32|V2-2P HGNC:5904|IMGT/GENE-DB:IGLV3-2 22 22q11.2 immunoglobulin lambda variable 3-2 (pseudogene) pseudo IGLV3-2 immunoglobulin lambda variable 3-2 (pseudogene) O - 20121230 -9606 28809 IGLV3-1 - IGLV31|V2-1 HGNC:5896|IMGT/GENE-DB:IGLV3-1 22 22q11.2 immunoglobulin lambda variable 3-1 other IGLV3-1 immunoglobulin lambda variable 3-1 O - 20121230 -9606 28810 IGLV2-34 - IGLV234|V1-10P HGNC:5893|IMGT/GENE-DB:IGLV2-34 22 22q11.2 immunoglobulin lambda variable 2-34 (pseudogene) pseudo IGLV2-34 immunoglobulin lambda variable 2-34 (pseudogene) O - 20121230 -9606 28811 IGLV2-33 - IGLV233|V1-9 HGNC:5892|IMGT/GENE-DB:IGLV2-33 22 22q11.2 immunoglobulin lambda variable 2-33 (non-functional) other IGLV2-33 immunoglobulin lambda variable 2-33 (non-functional) O - 20121230 -9606 28812 IGLV2-28 - IGLV228|V1-8P HGNC:5891|IMGT/GENE-DB:IGLV2-28 22 22q11.2 immunoglobulin lambda variable 2-28 (pseudogene) pseudo IGLV2-28 immunoglobulin lambda variable 2-28 (pseudogene) O - 20121230 -9606 28813 IGLV2-23 - IGLV223|V1-7 HGNC:5890|IMGT/GENE-DB:IGLV2-23 22 22q11.2 immunoglobulin lambda variable 2-23 other IGLV2-23 immunoglobulin lambda variable 2-23 O - 20121230 -9606 28814 IGLV2-18 - IGLV218|V1-5 HGNC:5889|IMGT/GENE-DB:IGLV2-18 22 22q11.2 immunoglobulin lambda variable 2-18 other IGLV2-18 immunoglobulin lambda variable 2-18 O - 20121230 -9606 28815 IGLV2-14 - IGLV214|V1-4 HGNC:5888|IMGT/GENE-DB:IGLV2-14 22 22q11.2 immunoglobulin lambda variable 2-14 other IGLV2-14 immunoglobulin lambda variable 2-14 O - 20121230 -9606 28816 IGLV2-11 - IGLV211|V1-3 HGNC:5887|IMGT/GENE-DB:IGLV2-11 22 22q11.2 immunoglobulin lambda variable 2-11 other IGLV2-11 immunoglobulin lambda variable 2-11 O - 20121230 -9606 28817 IGLV2-8 - IGLV28|V1-2 HGNC:5895|IMGT/GENE-DB:IGLV2-8 22 22q11.2 immunoglobulin lambda variable 2-8 other IGLV2-8 immunoglobulin lambda variable 2-8 O - 20121230 -9606 28818 IGLV2-5 - IGLV25|V1-1P HGNC:5894|IMGT/GENE-DB:IGLV2-5 22 22q11.2 immunoglobulin lambda variable 2-5 (pseudogene) pseudo IGLV2-5 immunoglobulin lambda variable 2-5 (pseudogene) O - 20121230 -9606 28819 IGLV1-62 - IGLV162|V1-23P HGNC:5883|IMGT/GENE-DB:IGLV1-62 22 22q11.2 immunoglobulin lambda variable 1-62 (pseudogene) pseudo IGLV1-62 immunoglobulin lambda variable 1-62 (pseudogene) O - 20121230 -9606 28820 IGLV1-51 - IGLV151|V1-19 HGNC:5882|IMGT/GENE-DB:IGLV1-51 22 22q11.2 immunoglobulin lambda variable 1-51 other IGLV1-51 immunoglobulin lambda variable 1-51 O - 20121230 -9606 28821 IGLV1-50 - IGLV150|V1-18 HGNC:5881|IMGT/GENE-DB:IGLV1-50 22 22q11.2 immunoglobulin lambda variable 1-50 (non-functional) other IGLV1-50 immunoglobulin lambda variable 1-50 (non-functional) O - 20121230 -9606 28822 IGLV1-47 - IGLV147|V1-17 HGNC:5880|IMGT/GENE-DB:IGLV1-47 22 22q11.2 immunoglobulin lambda variable 1-47 other IGLV1-47 immunoglobulin lambda variable 1-47 O - 20121230 -9606 28823 IGLV1-44 - IGLV144|V1-16 HGNC:5879|IMGT/GENE-DB:IGLV1-44 22 22q11.2 immunoglobulin lambda variable 1-44 other IGLV1-44 immunoglobulin lambda variable 1-44 O - 20121230 -9606 28824 IGLV1-41 - IGLV141|V1-14P HGNC:5878|IMGT/GENE-DB:IGLV1-41 22 22q11.2 immunoglobulin lambda variable 1-41 (pseudogene) pseudo IGLV1-41 immunoglobulin lambda variable 1-41 (pseudogene) O - 20121230 -9606 28825 IGLV1-40 - IGLV140|V1-13 HGNC:5877|IMGT/GENE-DB:IGLV1-40 22 22q11.2 immunoglobulin lambda variable 1-40 other IGLV1-40 immunoglobulin lambda variable 1-40 O - 20121230 -9606 28826 IGLV1-36 - IGLV136|V1-11 HGNC:5876|IMGT/GENE-DB:IGLV1-36 22 22q11.2 immunoglobulin lambda variable 1-36 other IGLV1-36 immunoglobulin lambda variable 1-36 O - 20121230 -9606 28827 IGLJ7 - J7 HGNC:5869|IMGT/GENE-DB:IGLJ7 22 22q11.2 immunoglobulin lambda joining 7 other IGLJ7 immunoglobulin lambda joining 7 O - 20121230 -9606 28828 IGLJ6 - - HGNC:5868|IMGT/GENE-DB:IGLJ6 22 22q11.2 immunoglobulin lambda joining 6 other IGLJ6 immunoglobulin lambda joining 6 O - 20121230 -9606 28829 IGLJ5 - - HGNC:5867|IMGT/GENE-DB:IGLJ5 22 22q11.2 immunoglobulin lambda joining 5 (non-functional) other IGLJ5 immunoglobulin lambda joining 5 (non-functional) O - 20121230 -9606 28830 IGLJ4 - - HGNC:5866|IMGT/GENE-DB:IGLJ4 22 22q11.2 immunoglobulin lambda joining 4 (non-functional) other IGLJ4 immunoglobulin lambda joining 4 (non-functional) O - 20121230 -9606 28831 IGLJ3 - J3 HGNC:5865|IMGT/GENE-DB:IGLJ3 22 22q11.2 immunoglobulin lambda joining 3 other IGLJ3 immunoglobulin lambda joining 3 O - 20121230 -9606 28832 IGLJ2 - J2 HGNC:5864|IMGT/GENE-DB:IGLJ2 22 22q11.2 immunoglobulin lambda joining 2 other IGLJ2 immunoglobulin lambda joining 2 O - 20121230 -9606 28833 IGLJ1 - J1 HGNC:5863|IMGT/GENE-DB:IGLJ1 22 22q11.2 immunoglobulin lambda joining 1 other IGLJ1 immunoglobulin lambda joining 1 O - 20121230 -9606 28834 IGLC7 - C7 HGNC:5861|IMGT/GENE-DB:IGLC7 22 22q11.2 immunoglobulin lambda constant 7 other IGLC7 immunoglobulin lambda constant 7 O - 20121230 -9606 28847 IGKV2OR22-4 - IGKV2OR224|IGKVP6 HGNC:5813|IMGT/GENE-DB:IGKV2/OR22-4 22 22q11 immunoglobulin kappa variable 2/OR22-4 (pseudogene) pseudo IGKV2OR22-4 immunoglobulin kappa variable 2/OR22-4 (pseudogene) O - 20121230 -9606 28850 IGKV1OR22-5 - IGKV1OR22-5A|IGKV1OR225|IGKV1OR225A|IGKVP7 HGNC:5773|IMGT/GENE-DB:IGKV1/OR22-5 22 22q11 immunoglobulin kappa variable 1/OR22-5 (pseudogene) other IGKV1OR22-5 immunoglobulin kappa variable 1/OR22-5 (pseudogene) O - 20111109 -9606 28854 IGKV3OR2-5 - IGKV3/OR2-5|IGKV3OR25 HGNC:5832|IMGT/GENE-DB:IGKV3/OR2-5 2 - immunoglobulin kappa variable 3/OR2-5 (pseudogene) pseudo IGKV3OR2-5 immunoglobulin kappa variable 3/OR2-5 (pseudogene) O - 20111109 -9606 28855 IGKV2OR2-10 - IGKV2OR210 HGNC:5806|IMGT/GENE-DB:IGKV2/OR2-10 2 - immunoglobulin kappa variable 2/OR2-10 (pseudogene) pseudo IGKV2OR2-10 immunoglobulin kappa variable 2/OR2-10 (pseudogene) O - 20121209 -9606 28856 IGKV2OR2-8 - IGKV2/OR2-8|IGKV2OR28 HGNC:5811|IMGT/GENE-DB:IGKV2/OR2-8 2 - immunoglobulin kappa variable 2/OR2-8 (pseudogene) pseudo IGKV2OR2-8 immunoglobulin kappa variable 2/OR2-8 (pseudogene) O - 20120720 -9606 28858 IGKV2OR2-4 - IGKV2/OR2-4|IGKV2OR24 HGNC:5809|IMGT/GENE-DB:IGKV2/OR2-4 2 - immunoglobulin kappa variable 2/OR2-4 (pseudogene) pseudo IGKV2OR2-4 immunoglobulin kappa variable 2/OR2-4 (pseudogene) O - 20111109 -9606 28859 IGKV2OR2-2 - IGKV2/OR2-2|IGKV2OR22 HGNC:5808|IMGT/GENE-DB:IGKV2/OR2-2 2 2q11.2 immunoglobulin kappa variable 2/OR2-2 (pseudogene) pseudo IGKV2OR2-2 immunoglobulin kappa variable 2/OR2-2 (pseudogene) O - 20111109 -9606 28861 IGKV2OR2-1 - IGKV2/OR2-1|IGKV2OR2-1A|IGKV2OR21|IGKV2OR21A HGNC:5805|IMGT/GENE-DB:IGKV2/OR2-1 2 - immunoglobulin kappa variable 2/OR2-1 (pseudogene) pseudo IGKV2OR2-1 immunoglobulin kappa variable 2/OR2-1 (pseudogene) O - 20111109 -9606 28862 IGKV1OR2-108 - IGKV1OR2108|IGO1 HGNC:5767|MIM:147185|IMGT/GENE-DB:IGKV1/OR2-108 2 2q12-q14 immunoglobulin kappa variable 1/OR2-108 (non-functional) other IGKV1OR2-108 immunoglobulin kappa variable 1/OR2-108 (non-functional) O - 20111109 -9606 28863 IGKV1OR2-11 - IGKV1OR211 HGNC:5768|IMGT/GENE-DB:IGKV1/OR2-11 1 - immunoglobulin kappa variable 1/OR2-11 (pseudogene) pseudo IGKV1OR2-11 immunoglobulin kappa variable 1/OR2-11 (pseudogene) O - 20111109 -9606 28864 IGKV1OR2-9 - IGKV1/OR2-9|IGKV1OR29 HGNC:5771|IMGT/GENE-DB:IGKV1/OR2-9 1 - immunoglobulin kappa variable 1/OR2-9 (pseudogene) pseudo IGKV1OR2-9 immunoglobulin kappa variable 1/OR2-9 (pseudogene) O - 20111109 -9606 28865 IGKV1OR2-6 - IGKV1/OR2-6|IGKV1OR26 HGNC:5770|IMGT/GENE-DB:IGKV1/OR2-6 1 - immunoglobulin kappa variable 1/OR2-6 (pseudogene) pseudo IGKV1OR2-6 immunoglobulin kappa variable 1/OR2-6 (pseudogene) O - 20111109 -9606 28866 IGKV1OR2-3 - IGKV1/OR2-3|IGKV1OR23 HGNC:5769|IMGT/GENE-DB:IGKV1/OR2-3 1 - immunoglobulin kappa variable 1/OR2-3 (pseudogene) pseudo IGKV1OR2-3 immunoglobulin kappa variable 1/OR2-3 (pseudogene) O - 20111109 -9606 28867 IGKV1OR2-0 - IGKV1/OR2-0|IGKV1OR20 HGNC:5766|IMGT/GENE-DB:IGKV1/OR2-0 1 - immunoglobulin kappa variable 1/OR2-0 (non-functional) other IGKV1OR2-0 immunoglobulin kappa variable 1/OR2-0 (non-functional) O - 20111109 -9606 28869 IGKV6D-41 - A14 HGNC:5838|IMGT/GENE-DB:IGKV6D-41 2 2p12 immunoglobulin kappa variable 6D-41 (non-functional) other IGKV6D-41 immunoglobulin kappa variable 6D-41 (non-functional) O - 20121209 -9606 28870 IGKV6D-21 - A10|IGKV6D21 HGNC:5837|IMGT/GENE-DB:IGKV6D-21 2 2p12 immunoglobulin kappa variable 6D-21 (non-functional) other IGKV6D-21 immunoglobulin kappa variable 6D-21 (non-functional) O - 20121209 -9606 28871 IGKV3D-34 - IGKV3D34|O7 HGNC:5828|IMGT/GENE-DB:IGKV3D-34 2 2p12 immunoglobulin kappa variable 3D-34 (pseudogene) pseudo IGKV3D-34 immunoglobulin kappa variable 3D-34 (pseudogene) O - 20121209 -9606 28872 IGKV3D-31 - IGKV3D31|O10 HGNC:5827|IMGT/GENE-DB:IGKV3D-31 2 2p12 immunoglobulin kappa variable 3D-31 (pseudogene) pseudo IGKV3D-31 immunoglobulin kappa variable 3D-31 (pseudogene) O - 20121209 -9606 28873 IGKV3D-25 - A6|IGKV3D25 HGNC:5826|IMGT/GENE-DB:IGKV3D-25 2 2p12 immunoglobulin kappa variable 3D-25 (pseudogene) pseudo IGKV3D-25 immunoglobulin kappa variable 3D-25 (pseudogene) O - 20121209 -9606 28874 IGKV3D-20 - A11|A11a|IGKV3D20 HGNC:5825|IMGT/GENE-DB:IGKV3D-20 2 2p12 immunoglobulin kappa variable 3D-20 other IGKV3D-20 immunoglobulin kappa variable 3D-20 O - 20121230 -9606 28875 IGKV3D-15 - IGKV3D15|L16|L16a|L16b|L16c HGNC:5824|IMGT/GENE-DB:IGKV3D-15 2 2p12 immunoglobulin kappa variable 3D-15 (gene/pseudogene) other IGKV3D-15 immunoglobulin kappa variable 3D-15 (gene/pseudogene) O - 20121230 -9606 28876 IGKV3D-11 - IGKV3D11|L20 HGNC:5823|IMGT/GENE-DB:IGKV3D-11 2 2p12 immunoglobulin kappa variable 3D-11 other IGKV3D-11 immunoglobulin kappa variable 3D-11 O - 20121230 -9606 28877 IGKV3D-7 - IGKV3D7|L25 HGNC:5829|IMGT/GENE-DB:IGKV3D-7 2 2p12 immunoglobulin kappa variable 3D-7 other IGKV3D-7 immunoglobulin kappa variable 3D-7 O - 20121230 -9606 28878 IGKV2D-40 - IGKV2D40|O1 HGNC:5804|IMGT/GENE-DB:IGKV2D-40 2 2p12 immunoglobulin kappa variable 2D-40 other IGKV2D-40 immunoglobulin kappa variable 2D-40 O - 20121230 -9606 28879 IGKV2D-38 - IGKV2D38|O3 HGNC:5803|IMGT/GENE-DB:IGKV2D-38 2 2p12 immunoglobulin kappa variable 2D-38 (pseudogene) pseudo IGKV2D-38 immunoglobulin kappa variable 2D-38 (pseudogene) O - 20121209 -9606 28880 IGKV2D-36 - IGKV2D36|O5 HGNC:5802|IMGT/GENE-DB:IGKV2D-36 2 2p12 immunoglobulin kappa variable 2D-36 (pseudogene) pseudo IGKV2D-36 immunoglobulin kappa variable 2D-36 (pseudogene) O - 20121209 -9606 28881 IGKV2D-30 - A1|IGKV2D30 HGNC:5801|IMGT/GENE-DB:IGKV2D-30 2 2p12 immunoglobulin kappa variable 2D-30 other IGKV2D-30 immunoglobulin kappa variable 2D-30 O - 20121209 -9606 28882 IGKV2D-29 - A2a|A2c|IGKV2D29 HGNC:5800|IMGT/GENE-DB:IGKV2D-29 2 2p12 immunoglobulin kappa variable 2D-29 other IGKV2D-29 immunoglobulin kappa variable 2D-29 O - 20121230 -9606 28883 IGKV2D-28 - A3|IGKV2D28 HGNC:5799|IMGT/GENE-DB:IGKV2D-28 2 2p12 immunoglobulin kappa variable 2D-28 other IGKV2D-28 immunoglobulin kappa variable 2D-28 O - 20121209 -9606 28884 IGKV2D-26 - A5|IGKV2D26 HGNC:5798|IMGT/GENE-DB:IGKV2D-26 2 2p12 immunoglobulin kappa variable 2D-26 pseudo IGKV2D-26 immunoglobulin kappa variable 2D-26 O - 20121209 -9606 28885 IGKV2D-24 - A7|IGKV2D24 HGNC:5797|IMGT/GENE-DB:IGKV2D-24 2 2p12 immunoglobulin kappa variable 2D-24 (non-functional) other IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) O - 20121230 -9606 28886 IGKV2D-23 - A8|IGKV2D23 HGNC:5796|IMGT/GENE-DB:IGKV2D-23 2 2p12 immunoglobulin kappa variable 2D-23 (pseudogene) pseudo IGKV2D-23 immunoglobulin kappa variable 2D-23 (pseudogene) O - 20121209 -9606 28887 IGKV2D-19 - A12|IGKV2D19 HGNC:5795|IMGT/GENE-DB:IGKV2D-19 2 2p12 immunoglobulin kappa variable 2D-19 (pseudogene) pseudo IGKV2D-19 immunoglobulin kappa variable 2D-19 (pseudogene) O - 20121209 -9606 28888 IGKV2D-18 - A13|IGKV2D18 HGNC:5794|IMGT/GENE-DB:IGKV2D-18 2 2p12 immunoglobulin kappa variable 2D-18 (pseudogene) pseudo IGKV2D-18 immunoglobulin kappa variable 2D-18 (pseudogene) O - 20121230 -9606 28889 IGKV2D-14 - IGKV2D14|L17 HGNC:5793|IMGT/GENE-DB:IGKV2D-14 2 2p12 immunoglobulin kappa variable 2D-14 (pseudogene) pseudo IGKV2D-14 immunoglobulin kappa variable 2D-14 (pseudogene) O - 20121209 -9606 28890 IGKV2D-10 - IGKV2D10|L21 HGNC:5792|IMGT/GENE-DB:IGKV2D-10 2 2p12 immunoglobulin kappa variable 2D-10 (pseudogene) pseudo IGKV2D-10 immunoglobulin kappa variable 2D-10 (pseudogene) O - 20121230 -9606 28891 IGKV1D-43 - IGKV1D43|L23|L23a HGNC:5758|IMGT/GENE-DB:IGKV1D-43 2 2p12 immunoglobulin kappa variable 1D-43 other IGKV1D-43 immunoglobulin kappa variable 1D-43 O - 20121230 -9606 28892 IGKV1D-42 - IGKV1D42|L22 HGNC:5757|IMGT/GENE-DB:IGKV1D-42 2 2p12 immunoglobulin kappa variable 1D-42 (non-functional) other IGKV1D-42 immunoglobulin kappa variable 1D-42 (non-functional) O - 20121230 -9606 28893 IGKV1D-39 - IGKV1D39|O2 HGNC:5756|IMGT/GENE-DB:IGKV1D-39 2 2p12 immunoglobulin kappa variable 1D-39 other IGKV1D-39 immunoglobulin kappa variable 1D-39 O - 20121209 -9606 28894 IGKV1D-37 - IGKV1D37|O4 HGNC:5755|IMGT/GENE-DB:IGKV1D-37 2 2p12 immunoglobulin kappa variable 1D-37 (non-functional) other IGKV1D-37 immunoglobulin kappa variable 1D-37 (non-functional) O - 20121230 -9606 28895 IGKV1D-35 - IGKV1D35|O6 HGNC:5754|IMGT/GENE-DB:IGKV1D-35 2 2p12 immunoglobulin kappa variable 1D-35 (pseudogene) pseudo IGKV1D-35 immunoglobulin kappa variable 1D-35 (pseudogene) O - 20121209 -9606 28896 IGKV1D-33 - IGKV1D33|O8 HGNC:5753|IMGT/GENE-DB:IGKV1D-33 2 2p12 immunoglobulin kappa variable 1D-33 other IGKV1D-33 immunoglobulin kappa variable 1D-33 O - 20121230 -9606 28897 IGKV1D-32 - IGKV1D32|O9 HGNC:5752|IMGT/GENE-DB:IGKV1D-32 2 2p12 immunoglobulin kappa variable 1D-32 (pseudogene) pseudo IGKV1D-32 immunoglobulin kappa variable 1D-32 (pseudogene) O - 20121209 -9606 28898 IGKV1D-27 - A4|A4a|IGKV1D27 HGNC:5751|IMGT/GENE-DB:IGKV1D-27 2 2p12 immunoglobulin kappa variable 1D-27 (pseudogene) pseudo IGKV1D-27 immunoglobulin kappa variable 1D-27 (pseudogene) O - 20121209 -9606 28899 IGKV1D-22 - A9|IGKV1D22 HGNC:5750|IMGT/GENE-DB:IGKV1D-22 2 2p12 immunoglobulin kappa variable 1D-22 (pseudogene) pseudo IGKV1D-22 immunoglobulin kappa variable 1D-22 (pseudogene) O - 20121209 -9606 28900 IGKV1D-17 - IGKV1D17|L14 HGNC:5749|IMGT/GENE-DB:IGKV1D-17 2 2p12 immunoglobulin kappa variable 1D-17 other IGKV1D-17 immunoglobulin kappa variable 1D-17 O - 20121230 -9606 28901 IGKV1D-16 - IGKV1D16|L15|L15a HGNC:5748|IMGT/GENE-DB:IGKV1D-16 2 2p12 immunoglobulin kappa variable 1D-16 other IGKV1D-16 immunoglobulin kappa variable 1D-16 O - 20121230 -9606 28902 IGKV1D-13 - IGKV1D13|L18 HGNC:5747|IMGT/GENE-DB:IGKV1D-13 2 2p12 immunoglobulin kappa variable 1D-13 other IGKV1D-13 immunoglobulin kappa variable 1D-13 O - 20121230 -9606 28903 IGKV1D-12 - IGKV1D12|L19 HGNC:5746|IMGT/GENE-DB:IGKV1D-12 2 2p12 immunoglobulin kappa variable 1D-12 other IGKV1D-12 immunoglobulin kappa variable 1D-12 O - 20121230 -9606 28904 IGKV1D-8 - IGKV1D8|L24|L24a HGNC:5759|IMGT/GENE-DB:IGKV1D-8 2 2p12 immunoglobulin kappa variable 1D-8 other IGKV1D-8 immunoglobulin kappa variable 1D-8 O - 20121230 -9606 28905 IGKV7-3 - B1|IGKV73 HGNC:5839|IMGT/GENE-DB:IGKV7-3 2 2p12 immunoglobulin kappa variable 7-3 (pseudogene) pseudo IGKV7-3 immunoglobulin kappa variable 7-3 (pseudogene) O - 20121230 -9606 28906 IGKV6-21 - A26|IGKV621 HGNC:5836|IMGT/GENE-DB:IGKV6-21 2 2p12 immunoglobulin kappa variable 6-21 (non-functional) other IGKV6-21 immunoglobulin kappa variable 6-21 (non-functional) O - 20121230 -9606 28907 IGKV5-2 - B2|IGKV52 HGNC:5835|IMGT/GENE-DB:IGKV5-2 2 2p12 immunoglobulin kappa variable 5-2 other IGKV5-2 immunoglobulin kappa variable 5-2 O - 20121230 -9606 28908 IGKV4-1 - B3|IGKV41 HGNC:5834|IMGT/GENE-DB:IGKV4-1 2 2p12 immunoglobulin kappa variable 4-1 other IGKV4-1 immunoglobulin kappa variable 4-1 O - 20121230 -9606 28909 IGKV3-34 - IGKV334|O17 HGNC:5820|IMGT/GENE-DB:IGKV3-34 2 2p12 immunoglobulin kappa variable 3-34 (pseudogene) pseudo IGKV3-34 immunoglobulin kappa variable 3-34 (pseudogene) O - 20121230 -9606 28910 IGKV3-31 - A16|A16a|IGKV331 HGNC:5819|IMGT/GENE-DB:IGKV3-31 2 2p12 immunoglobulin kappa variable 3-31 (pseudogene) pseudo IGKV3-31 immunoglobulin kappa variable 3-31 (pseudogene) O - 20121230 -9606 28911 IGKV3-25 - A22|IGKV325 HGNC:5818|IMGT/GENE-DB:IGKV3-25 2 2p12 immunoglobulin kappa variable 3-25 (pseudogene) pseudo IGKV3-25 immunoglobulin kappa variable 3-25 (pseudogene) O - 20121230 -9606 28912 IGKV3-20 - 13K18|A27|IGKV320 HGNC:5817|IMGT/GENE-DB:IGKV3-20 2 2p12 immunoglobulin kappa variable 3-20 other IGKV3-20 immunoglobulin kappa variable 3-20 O - 20121230 -9606 28913 IGKV3-15 - IGKV315|L2 HGNC:5816|IMGT/GENE-DB:IGKV3-15 2 2p12 immunoglobulin kappa variable 3-15 other IGKV3-15 immunoglobulin kappa variable 3-15 O - 20121230 -9606 28914 IGKV3-11 - IGKV311|L6 HGNC:5815|IMGT/GENE-DB:IGKV3-11 2 2p12 immunoglobulin kappa variable 3-11 other IGKV3-11 immunoglobulin kappa variable 3-11 O - 20121230 -9606 28915 IGKV3-7 - IGKV37|L10|L10a|Vh HGNC:5821|IMGT/GENE-DB:IGKV3-7 2 2p12 immunoglobulin kappa variable 3-7 (non-functional) other IGKV3-7 immunoglobulin kappa variable 3-7 (non-functional) O - 20121230 -9606 28916 IGKV2-40 - IGKV240|O11|O11a HGNC:5789|IMGT/GENE-DB:IGKV2-40 2 2p12 immunoglobulin kappa variable 2-40 other IGKV2-40 immunoglobulin kappa variable 2-40 O - 20121230 -9606 28917 IGKV2-38 - IGKV238|O13 HGNC:5787|IMGT/GENE-DB:IGKV2-38 2 2p12 immunoglobulin kappa variable 2-38 (pseudogene) pseudo IGKV2-38 immunoglobulin kappa variable 2-38 (pseudogene) O - 20121230 -9606 28918 IGKV2-36 - IGKV236|O15 HGNC:5786|IMGT/GENE-DB:IGKV2-36 2 2p12 immunoglobulin kappa variable 2-36 (pseudogene) pseudo IGKV2-36 immunoglobulin kappa variable 2-36 (pseudogene) O - 20121230 -9606 28919 IGKV2-30 - A17|IGKV230 HGNC:5785|IMGT/GENE-DB:IGKV2-30 2 2p12 immunoglobulin kappa variable 2-30 other IGKV2-30 immunoglobulin kappa variable 2-30 O - 20121230 -9606 28920 IGKV2-29 - A18|A18b|IGKV229 HGNC:5784|IMGT/GENE-DB:IGKV2-29 2 2p12 immunoglobulin kappa variable 2-29 (gene/pseudogene) pseudo IGKV2-29 immunoglobulin kappa variable 2-29 (gene/pseudogene) O - 20121230 -9606 28921 IGKV2-28 - A19|IGKV228 HGNC:5783|IMGT/GENE-DB:IGKV2-28 2 2p12 immunoglobulin kappa variable 2-28 other IGKV2-28 immunoglobulin kappa variable 2-28 O - 20121230 -9606 28922 IGKV2-26 - A21|IGKV226 HGNC:5782|IMGT/GENE-DB:IGKV2-26 2 2p12 immunoglobulin kappa variable 2-26 (pseudogene) pseudo IGKV2-26 immunoglobulin kappa variable 2-26 (pseudogene) O - 20121230 -9606 28923 IGKV2-24 - A23|IGKV224 HGNC:5781|IMGT/GENE-DB:IGKV2-24 2 2p12 immunoglobulin kappa variable 2-24 other IGKV2-24 immunoglobulin kappa variable 2-24 O - 20121230 -9606 28924 IGKV2-23 - A24|IGKV223 HGNC:5780|IMGT/GENE-DB:IGKV2-23 2 2p12 immunoglobulin kappa variable 2-23 (pseudogene) pseudo IGKV2-23 immunoglobulin kappa variable 2-23 (pseudogene) O - 20121230 -9606 28925 IGKV2-19 - A28|IGKV219 HGNC:5779|IMGT/GENE-DB:IGKV2-19 2 2p12 immunoglobulin kappa variable 2-19 (pseudogene) pseudo IGKV2-19 immunoglobulin kappa variable 2-19 (pseudogene) O - 20121230 -9606 28926 IGKV2-18 - A29|IGKV218 HGNC:5778|IMGT/GENE-DB:IGKV2-18 2 2p12 immunoglobulin kappa variable 2-18 (pseudogene) pseudo IGKV2-18 immunoglobulin kappa variable 2-18 (pseudogene) O - 20121230 -9606 28927 IGKV2-14 - IGKV214|L3 HGNC:5777|IMGT/GENE-DB:IGKV2-14 2 2p12 immunoglobulin kappa variable 2-14 (pseudogene) pseudo IGKV2-14 immunoglobulin kappa variable 2-14 (pseudogene) O - 20121230 -9606 28928 IGKV2-10 - IGKV210|L7 HGNC:5776|IMGT/GENE-DB:IGKV2-10 2 2p12 immunoglobulin kappa variable 2-10 (pseudogene) pseudo IGKV2-10 immunoglobulin kappa variable 2-10 (pseudogene) O - 20121230 -9606 28929 IGKV2-4 - IGKV24|L13 HGNC:5788|IMGT/GENE-DB:IGKV2-4 2 2p12 immunoglobulin kappa variable 2-4 (pseudogene) pseudo IGKV2-4 immunoglobulin kappa variable 2-4 (pseudogene) O - 20121230 -9606 28930 IGKV1-39 - IGKV139|O12|O12a HGNC:5740|IMGT/GENE-DB:IGKV1-39 2 2p12 immunoglobulin kappa variable 1-39 (gene/pseudogene) other IGKV1-39 immunoglobulin kappa variable 1-39 (gene/pseudogene) O - 20121230 -9606 28931 IGKV1-37 - IGKV137|O14 HGNC:5739|IMGT/GENE-DB:IGKV1-37 2 2p12 immunoglobulin kappa variable 1-37 (non-functional) other IGKV1-37 immunoglobulin kappa variable 1-37 (non-functional) O - 20121230 -9606 28932 IGKV1-35 - IGKV135|O16 HGNC:5738|IMGT/GENE-DB:IGKV1-35 2 2p12 immunoglobulin kappa variable 1-35 (pseudogene) pseudo IGKV1-35 immunoglobulin kappa variable 1-35 (pseudogene) O - 20121230 -9606 28933 IGKV1-33 - IGKV133|O18 HGNC:5737|IMGT/GENE-DB:IGKV1-33 2 2p12 immunoglobulin kappa variable 1-33 other IGKV1-33 immunoglobulin kappa variable 1-33 O - 20121230 -9606 28934 IGKV1-32 - A15|A15a|IGKV132 HGNC:5736|IMGT/GENE-DB:IGKV1-32 2 2p12 immunoglobulin kappa variable 1-32 (pseudogene) pseudo IGKV1-32 immunoglobulin kappa variable 1-32 (pseudogene) O - 20121230 -9606 28935 IGKV1-27 - A20|IGKV127 HGNC:5735|IMGT/GENE-DB:IGKV1-27 2 2p12 immunoglobulin kappa variable 1-27 other IGKV1-27 immunoglobulin kappa variable 1-27 O - 20121230 -9606 28936 IGKV1-22 - A25|IGKV122 HGNC:5734|IMGT/GENE-DB:IGKV1-22 2 2p12 immunoglobulin kappa variable 1-22 (pseudogene) pseudo IGKV1-22 immunoglobulin kappa variable 1-22 (pseudogene) O - 20121230 -9606 28937 IGKV1-17 - A30|IGKV117 HGNC:5733|IMGT/GENE-DB:IGKV1-17 2 2p12 immunoglobulin kappa variable 1-17 other IGKV1-17 immunoglobulin kappa variable 1-17 O - 20121230 -9606 28938 IGKV1-16 - IGKV116|L1 HGNC:5732|IMGT/GENE-DB:IGKV1-16 2 2p12 immunoglobulin kappa variable 1-16 other IGKV1-16 immunoglobulin kappa variable 1-16 O - 20121230 -9606 28939 IGKV1-13 - IGKV113|L18 HGNC:5731|IMGT/GENE-DB:IGKV1-13 2 2p12 immunoglobulin kappa variable 1-13 (gene/pseudogene) other IGKV1-13 immunoglobulin kappa variable 1-13 (gene/pseudogene) O - 20121230 -9606 28940 IGKV1-12 - IGKV112|L19 HGNC:5730|IMGT/GENE-DB:IGKV1-12 2 2p12 immunoglobulin kappa variable 1-12 other IGKV1-12 immunoglobulin kappa variable 1-12 O - 20121230 -9606 28941 IGKV1-9 - IGKV19|L8 HGNC:5744|IMGT/GENE-DB:IGKV1-9 2 2p12 immunoglobulin kappa variable 1-9 other IGKV1-9 immunoglobulin kappa variable 1-9 O - 20121230 -9606 28942 IGKV1-8 - IGKV18|L9 HGNC:5743|IMGT/GENE-DB:IGKV1-8 2 2p12 immunoglobulin kappa variable 1-8 other IGKV1-8 immunoglobulin kappa variable 1-8 O - 20121230 -9606 28943 IGKV1-6 - IGKV16|L11 HGNC:5742|IMGT/GENE-DB:IGKV1-6 2 2p12 immunoglobulin kappa variable 1-6 other IGKV1-6 immunoglobulin kappa variable 1-6 O - 20121230 -9606 28946 IGKJ5 - J5 HGNC:5723|IMGT/GENE-DB:IGKJ5 2 2p12 immunoglobulin kappa joining 5 other IGKJ5 immunoglobulin kappa joining 5 O - 20121230 -9606 28947 IGKJ4 - J4 HGNC:5722|IMGT/GENE-DB:IGKJ4 2 2p12 immunoglobulin kappa joining 4 other IGKJ4 immunoglobulin kappa joining 4 O - 20121230 -9606 28948 IGKJ3 - J3 HGNC:5721|IMGT/GENE-DB:IGKJ3 2 2p12 immunoglobulin kappa joining 3 other IGKJ3 immunoglobulin kappa joining 3 O - 20121230 -9606 28949 IGKJ2 - J2 HGNC:5720|IMGT/GENE-DB:IGKJ2 2 2p12 immunoglobulin kappa joining 2 other IGKJ2 immunoglobulin kappa joining 2 O - 20121230 -9606 28950 IGKJ1 - J1 HGNC:5719|IMGT/GENE-DB:IGKJ1 2 2p12 immunoglobulin kappa joining 1 other IGKJ1 immunoglobulin kappa joining 1 O - 20121230 -9606 28951 TRIB2 - C5FW|GS3955|TRB2 HGNC:30809|MIM:609462|Ensembl:ENSG00000071575|HPRD:18224|Vega:OTTHUMG00000090575 2 2p24.3 tribbles homolog 2 (Drosophila) protein-coding TRIB2 tribbles homolog 2 (Drosophila) O tribbles homolog 2 20121230 -9606 28952 CCDC22 JM1 CXorf37 HGNC:28909|MIM:300859|Ensembl:ENSG00000101997|HPRD:06594|Vega:OTTHUMG00000024141 X Xp11.23 coiled-coil domain containing 22 protein-coding CCDC22 coiled-coil domain containing 22 O coiled-coil domain-containing protein 22 20121230 -9606 28954 REM1 - GD:REM|GES|REM HGNC:15922|MIM:610388|Ensembl:ENSG00000088320|HPRD:15237|Vega:OTTHUMG00000032168 20 20q11.21 RAS (RAD and GEM)-like GTP-binding 1 protein-coding REM1 RAS (RAD and GEM)-like GTP-binding 1 O GTP-binding protein REM 1|GTPase GES|GTPase-regulating endothelial cell sprouting|rad and Gem-like GTP-binding protein 1 20121230 -9606 28955 DEXI - MYLE HGNC:13267|Ensembl:ENSG00000182108|HPRD:16798|Vega:OTTHUMG00000129785 16 16p13.13 Dexi homolog (mouse) protein-coding DEXI Dexi homolog (mouse) O dexamethasone-induced protein|dexamethasone-induced transcript 20121230 -9606 28956 LAMTOR2 RP11-336K24.9 ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14 HGNC:29796|MIM:610389|Ensembl:ENSG00000116586|HPRD:17463|Vega:OTTHUMG00000017462 1 1q22 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 protein-coding LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 O MAPKSP1 adaptor protein|endosomal adaptor protein p14|late endosomal/lysosomal Mp1-interacting protein|late endosomal/lysosomal adaptor and MAPK and MTOR activator 2|mitogen-activated protein-binding protein-interacting protein (MAPBPIP)|ragulator complex protein LAMTOR2|roadblock domain containing 3|roadblock domain-containing protein 3 20121230 -9606 28957 MRPS28 HSPC007 MRP-S28|MRP-S35|MRPS35 HGNC:14513|MIM:611990|Ensembl:ENSG00000147586|HPRD:10097|Vega:OTTHUMG00000164642 8 8q21.1-q21.2 mitochondrial ribosomal protein S28 protein-coding MRPS28 mitochondrial ribosomal protein S28 O 28S ribosomal protein S28, mitochondrial|28S ribosomal protein S35, mitochondrial|S28mt|S35mt|mitochondrial 28S ribosomal protein S35 20121230 -9606 28958 COA3 HSPC009 CCDC56|MITRAC12 HGNC:24990|MIM:614775|Ensembl:ENSG00000183978|Vega:OTTHUMG00000180651 17 17q21 cytochrome c oxidase assembly factor 3 protein-coding COA3 cytochrome c oxidase assembly factor 3 O coiled-coil domain-containing protein 56|cytochrome C oxidase assembly factor 3 homolog, mitochondrial 20121230 -9606 28959 TMEM176B - LR8 HGNC:29596|MIM:610385|Ensembl:ENSG00000106565|HPRD:17443|Vega:OTTHUMG00000157577 7 7q36.1 transmembrane protein 176B protein-coding TMEM176B transmembrane protein 176B O LR8-like protein 20121230 -9606 28960 DCPS HSPC015 HINT-5|HSL1 HGNC:29812|MIM:610534|Ensembl:ENSG00000110063|HPRD:16787|Vega:OTTHUMG00000165829 11 11q24.2 decapping enzyme, scavenger protein-coding DCPS decapping enzyme, scavenger O DCS-1|heat shock-like protein 1|hint-related 7meGMP-directed hydrolase|histidine triad protein member 5|homolog of C. elegans 7meGMP-directed hydrolase dcs-1|m7GpppX diphosphatase|mRNA decapping enzyme|scavenger mRNA-decapping enzyme DcpS 20121230 -9606 28962 OSTM1 HSPC019 GIPN|GL|OPTB5 HGNC:21652|MIM:607649|Ensembl:ENSG00000081087|HPRD:09628|Vega:OTTHUMG00000015317 6 6q21 osteopetrosis associated transmembrane protein 1 protein-coding OSTM1 osteopetrosis associated transmembrane protein 1 O GAIP-interacting protein N terminus|chloride channel 7 beta subunit|grey-lethal osteopetrosis|osteopetrosis-associated transmembrane protein 1 20121230 -9606 28964 GIT1 - - HGNC:4272|MIM:608434|Ensembl:ENSG00000108262|HPRD:06577|Vega:OTTHUMG00000132730 17 17p11.2 G protein-coupled receptor kinase interacting ArfGAP 1 protein-coding GIT1 G protein-coupled receptor kinase interacting ArfGAP 1 O ARF GAP GIT1|ARF GTPase-activating protein GIT1|CAT-1|CAT1|G protein-coupled receptor kinase interactor 1|G protein-coupled receptor kinase-interactor 1|GRK-interacting protein 1|cool-associated and tyrosine-phosphorylated protein 1 20121230 -9606 28965 SLC27A6 - ACSVL2|FACVL2|FATP6|VLCS-H1 HGNC:11000|MIM:604196|Ensembl:ENSG00000113396|HPRD:09173|Vega:OTTHUMG00000128991 5 5q23.3 solute carrier family 27 (fatty acid transporter), member 6 protein-coding SLC27A6 solute carrier family 27 (fatty acid transporter), member 6 O FATP-6|VLCSH1|fatty acid transport protein 6|fatty-acid-Coenzyme A ligase, very long-chain 2|hVLCS-H1|long-chain fatty acid transport protein 6|solute carrier family 27 member 6|very long-chain acyl-CoA synthetase homolog 1 20121230 -9606 28966 SNX24 SBBI31 PRO1284 HGNC:21533|Ensembl:ENSG00000064652|HPRD:15413|Vega:OTTHUMG00000128913 5 5q23.2 sorting nexin 24 protein-coding SNX24 sorting nexin 24 O sorting nexin-24|sorting nexing 24 20121230 -9606 28968 SLC6A16 - NTT5 HGNC:13622|MIM:607972|Ensembl:ENSG00000063127 19 19q13.33 solute carrier family 6, member 16 protein-coding SLC6A16 solute carrier family 6, member 16 O orphan sodium- and chloride-dependent neurotransmitter transporter NTT5|solute carrier family 6 (neurotransmitter transporter), member 16 20121230 -9606 28969 BZW2 HSPC028 MST017|MSTP017 HGNC:18808|Ensembl:ENSG00000136261|HPRD:16571|Vega:OTTHUMG00000130755 7 7p21.1 basic leucine zipper and W2 domains 2 protein-coding BZW2 basic leucine zipper and W2 domains 2 O basic leucine zipper and W2 domain-containing protein 2 20121230 -9606 28970 C11orf54 LP4947 PTD012 HGNC:30204|Ensembl:ENSG00000182919|HPRD:17923|Vega:OTTHUMG00000167452 11 11q21 chromosome 11 open reading frame 54 protein-coding C11orf54 chromosome 11 open reading frame 54 O LP4947|ester hydrolase C11orf54 20121230 -9606 28971 AAMDC PTD015 C11orf67|CK067 HGNC:30205|Ensembl:ENSG00000087884|HPRD:17924|Vega:OTTHUMG00000166651 11 11q14.1 adipogenesis associated, Mth938 domain containing protein-coding AAMDC adipogenesis associated, Mth938 domain containing O UPF0366 protein C11orf67 20121230 -9606 28972 SPCS1 HSPC033 SPC1|SPC12|YJR010C-A HGNC:23401|MIM:610358|Ensembl:ENSG00000114902|Vega:OTTHUMG00000154930 3 3p21.1 signal peptidase complex subunit 1 homolog (S. cerevisiae) protein-coding SPCS1 signal peptidase complex subunit 1 homolog (S. cerevisiae) O SPase 12 kDa subunit|microsomal signal peptidase 12 kDa subunit|signal peptidase 12kDa|signal peptidase complex subunit 1 20121230 -9606 28973 MRPS18B DADB-129D20.6 C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt HGNC:14516|MIM:611982|Ensembl:ENSG00000204568|HPRD:14781|Vega:OTTHUMG00000031268 6 6p21.3 mitochondrial ribosomal protein S18B protein-coding MRPS18B mitochondrial ribosomal protein S18B O 28S ribosomal protein S18-2, mitochondrial|28S ribosomal protein S18b, mitochondrial|MRP-S18-b|S18mt-b|mitochondrial ribosomal protein S18-2|mrps18-b 20121230 -9606 28974 C19orf53 HSPC023 LYDG10 HGNC:24991|Ensembl:ENSG00000104979|HPRD:13687|Vega:OTTHUMG00000180914 19 19p13.2 chromosome 19 open reading frame 53 protein-coding C19orf53 chromosome 19 open reading frame 53 O leydig cell tumor 10 kDa protein homolog 20121230 -9606 28976 ACAD9 - NPD002 HGNC:21497|MIM:611103|Ensembl:ENSG00000177646|HPRD:12412|Vega:OTTHUMG00000159942 3 3q21.3 acyl-CoA dehydrogenase family, member 9 protein-coding ACAD9 acyl-CoA dehydrogenase family, member 9 O acyl-CoA dehydrogenase family member 9, mitochondrial|acyl-Coenzyme A dehydrogenase family, member 9|very-long-chain acyl-CoA dehydrogenase VLCAD 20121230 -9606 28977 MRPL42 HSPC204 L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT HGNC:14493|MIM:611847|Ensembl:ENSG00000198015|HPRD:14761|Vega:OTTHUMG00000170157 12 12q22 mitochondrial ribosomal protein L42 protein-coding MRPL42 mitochondrial ribosomal protein L42 O 28S ribosomal protein S32, mitochondrial|39S ribosomal protein L31, mitochondrial|39S ribosomal protein L42, mitochondrial 20121230 -9606 28978 TMEM14A PTD011 C6orf73 HGNC:21076|Ensembl:ENSG00000096092|HPRD:15522|Vega:OTTHUMG00000014856 6 6p12.2 transmembrane protein 14A protein-coding TMEM14A transmembrane protein 14A O - 20121230 -9606 28981 IFT81 - CDV-1|CDV-1R|CDV1|CDV1R HGNC:14313|MIM:605489|Ensembl:ENSG00000122970|HPRD:09266|Vega:OTTHUMG00000169326 12 12q24.13 intraflagellar transport 81 homolog (Chlamydomonas) protein-coding IFT81 intraflagellar transport 81 homolog (Chlamydomonas) O carnitine deficiency-associated gene expressed in ventricle 1|carnitine deficiency-associated protein expressed in ventricle 1|intraflagellar transport protein 81 homolog 20121230 -9606 28982 FLVCR1 - AXPC1|FLVCR|MFSD7B|PCA|PCARP HGNC:24682|MIM:609144|Ensembl:ENSG00000162769|HPRD:16451|Vega:OTTHUMG00000036924 1 1q32.3 feline leukemia virus subgroup C cellular receptor 1 protein-coding FLVCR1 feline leukemia virus subgroup C cellular receptor 1 O feline leukemia virus subgroup C receptor-related protein 1 20121230 -9606 28983 TMPRSS11E UNQ742/PRO1461 DESC1|TMPRSS11E2 HGNC:24465|MIM:610399|Ensembl:ENSG00000087128|HPRD:09912|Vega:OTTHUMG00000160438 4 4q13.2 transmembrane protease, serine 11E protein-coding TMPRSS11E transmembrane protease, serine 11E O serine protease DESC1|transmembrane protease serine 11E|transmembrane protease serine 11E2|transmembrane protease, serine 11E2 20121230 -9606 28984 RGCC - C13orf15|RGC-32|RGC32|bA157L14.2 HGNC:20369|MIM:610077|Ensembl:ENSG00000102760|HPRD:17970|Vega:OTTHUMG00000016796 13 13q14.11 regulator of cell cycle protein-coding RGCC regulator of cell cycle O regulator of cell cycle RGCC|response gene to complement 32 protein 20121230 -9606 28985 MCTS1 - MCT-1|MCT1 HGNC:23357|MIM:300587|Ensembl:ENSG00000232119|HPRD:06634|Vega:OTTHUMG00000022303 X Xq24 malignant T cell amplified sequence 1 protein-coding MCTS1 malignant T cell amplified sequence 1 O malignant T cell-amplified sequence 1|malignant T-cell-amplified sequence 1|multiple copies T-cell malignancies 20121230 -9606 28986 MAGEH1 - APR-1|APR1|MAGEH HGNC:24092|MIM:300548|Ensembl:ENSG00000187601|HPRD:06633|Vega:OTTHUMG00000021655 X Xp11.21 melanoma antigen family H, 1 protein-coding MAGEH1 melanoma antigen family H, 1 O apoptosis-related protein 1|melanoma-associated antigen H1|restin 20121230 -9606 28987 NOB1 MSTP158 ART-4|MST158|NOB1P|PSMD8BP1 HGNC:29540|MIM:613586|Ensembl:ENSG00000141101|HPRD:11395|Vega:OTTHUMG00000137576 16 16q22.3 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) protein-coding NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) O PSMD8 binding protein 1|RNA-binding protein NOB1|adenocarcinoma antigen recognized by T lymphocytes 4|nin one binding protein|phosphorylation regulatory protein HP-10|protein ART-4 20121230 -9606 28988 DBNL PP5423 ABP1|HIP-55|SH3P7 HGNC:2696|MIM:610106|Ensembl:ENSG00000136279|HPRD:06588|Vega:OTTHUMG00000155350 7 7p13 drebrin-like protein-coding DBNL drebrin-like O HPK1-interacting protein of 55 kDa|SH3 domain-containing protein 7|cervical SH3P7|cervical mucin-associated protein|drebrin-F|drebrin-like protein|src homology 3 domain-containing protein HIP-55 20121230 -9606 28989 NTMT1 RP11-483H20.8 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A HGNC:23373|MIM:613560|Ensembl:ENSG00000148335|HPRD:10628|Vega:OTTHUMG00000020785 9 9q34.11 N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 O N-terminal RCC1 methyltransferase|X-Pro-Lys N-terminal protein methyltransferase 1A|alpha N-terminal protein methyltransferase 1A|methyltransferase like 11A|methyltransferase-like protein 11A 20121230 -9606 28990 ASTE1 HT001 - HGNC:25021|Ensembl:ENSG00000034533|HPRD:11038|Vega:OTTHUMG00000159644 3 3q22.1 asteroid homolog 1 (Drosophila) protein-coding ASTE1 asteroid homolog 1 (Drosophila) O protein asteroid homolog 1 20121230 -9606 28991 COMMD5 HT002 HCARG HGNC:17902|MIM:608216|Ensembl:ENSG00000170619|HPRD:16301|Vega:OTTHUMG00000165251 8 8q24.3 COMM domain containing 5 protein-coding COMMD5 COMM domain containing 5 O COMM domain-containing protein 5|hypertension-related calcium-regulated gene protein 20121230 -9606 28992 MACROD1 - LRP16 HGNC:29598|MIM:610400|Ensembl:ENSG00000133315|HPRD:17448|Vega:OTTHUMG00000167843 11 11q11 MACRO domain containing 1 protein-coding MACROD1 MACRO domain containing 1 O MACRO domain-containing protein 1|O-acetyl-ADP-ribose deacetylase MACROD1 20121230 -9606 28994 PRO0471 - - - 3 3p13-q26.1 uncharacterized LOC28994 unknown - - - - 20121006 -9606 28996 HIPK2 - PRO0593 HGNC:14402|MIM:606868|Ensembl:ENSG00000064393|HPRD:06039|Vega:OTTHUMG00000157704 7 7q32-q34 homeodomain interacting protein kinase 2 protein-coding HIPK2 homeodomain interacting protein kinase 2 O hHIPk2|homeodomain-interacting protein kinase 2 20121230 -9606 28997 PRO0611 - - - 1 1p35.2 PRO0611 protein unknown - - - - 20121017 -9606 28998 MRPL13 - L13|L13A|L13mt|RPL13|RPML13 HGNC:14278|MIM:610200|Ensembl:ENSG00000172172|HPRD:14740|Vega:OTTHUMG00000165039 8 8q22.1-q22.3 mitochondrial ribosomal protein L13 protein-coding MRPL13 mitochondrial ribosomal protein L13 O 39S ribosomal protein L13, mitochondrial|MRP-L13 20121230 -9606 28999 KLF15 - KKLF HGNC:14536|MIM:606465|Ensembl:ENSG00000163884|HPRD:07568|Vega:OTTHUMG00000162689 3 3q21.3 Kruppel-like factor 15 protein-coding KLF15 Kruppel-like factor 15 O Krueppel-like factor 15|kidney-enriched Kruppel-like factor|kidney-enriched krueppel-like factor 20121230 -9606 29013 PRO1596 - - - 1 1p34.3 uncharacterized LOC29013 unknown - - - - 20121006 -9606 29015 SLC43A3 PSEC0252 EEG1|FOAP-13|PRO1659|SEEEG-1 HGNC:17466|Ensembl:ENSG00000134802|HPRD:15391|Vega:OTTHUMG00000167113 11 11q11 solute carrier family 43, member 3 protein-coding SLC43A3 solute carrier family 43, member 3 O likely ortholog of mouse embryonic epithelial gene 1|solute carrier family 43 member 3 20121230 -9606 29018 FOXN3-AS2 PRO1768 - HGNC:30119 14 14q32.11 FOXN3 antisense RNA 2 miscRNA FOXN3-AS2 FOXN3 antisense RNA 2 O - 20121230 -9606 29028 ATAD2 L16 ANCCA|PRO2000 HGNC:30123|MIM:611941|Ensembl:ENSG00000156802|HPRD:10678|Vega:OTTHUMG00000165090 8 8q24.13 ATPase family, AAA domain containing 2 protein-coding ATAD2 ATPase family, AAA domain containing 2 O AAA nuclear coregulator cancer-associated protein|ATPase family AAA domain-containing protein 2 20121230 -9606 29034 CPS1-IT1 - CPS1-IT|CPS1IT|CPS1IT1|PRO0132 HGNC:30102 2 2q34 CPS1 intronic transcript 1 (non-protein coding) miscRNA CPS1-IT1 CPS1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 29035 C16orf72 - PRO0149 HGNC:30103|Ensembl:ENSG00000182831|HPRD:17910|Vega:OTTHUMG00000178147 16 16p13.2 chromosome 16 open reading frame 72 protein-coding C16orf72 chromosome 16 open reading frame 72 O UPF0472 protein C16orf72 20121230 -9606 29044 C9orf38 PRO0365 - HGNC:23398 9 9p24.1 chromosome 9 open reading frame 38 unknown C9orf38 chromosome 9 open reading frame 38 O - 20121230 -9606 29053 PRO0628 - - - 20 20q12 uncharacterized LOC29053 unknown - - - - 20121018 -9606 29057 FAM156A RP1-248F5.1 PRO0659|TMEM29 HGNC:30114|Ensembl:ENSG00000182646|HPRD:06683|Vega:OTTHUMG00000021595 X Xp11.22 family with sequence similarity 156, member A protein-coding FAM156A family with sequence similarity 156, member A O protein FAM156A|protein FAM156A/FAM156B|transmembrane protein 29 20121230 -9606 29058 TMEM230 RP5-1116H23.2 C20orf30|HSPC274|dJ1116H23.2.1 HGNC:15876|Ensembl:ENSG00000089063|HPRD:12762|Vega:OTTHUMG00000031796 20 20p13 transmembrane protein 230 protein-coding TMEM230 transmembrane protein 230 O UPF0414 transmembrane protein C20orf30 20121230 -9606 29062 WDR91 HSPC049 - HGNC:24997|Ensembl:ENSG00000105875|HPRD:11035|Vega:OTTHUMG00000155414 7 7q33 WD repeat domain 91 protein-coding WDR91 WD repeat domain 91 O WD repeat-containing protein 91 20121230 -9606 29063 ZCCHC4 - HSPC052 HGNC:22917|MIM:611792|Ensembl:ENSG00000168228|Vega:OTTHUMG00000160563 4 4p15.2 zinc finger, CCHC domain containing 4 protein-coding ZCCHC4 zinc finger, CCHC domain containing 4 O DHHC domain-containing zinc finger protein|zinc finger CCHC domain-containing protein 4 20121230 -9606 29065 ASAP1-IT1 - ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 HGNC:24998 8 8q24.21 ASAP1 intronic transcript 1 (non-protein coding) miscRNA ASAP1-IT1 ASAP1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 29066 ZC3H7A HSPC055 ZC3H7|ZC3HDC7 HGNC:30959|Ensembl:ENSG00000122299|HPRD:11694|Vega:OTTHUMG00000129825 16 16p13-p12 zinc finger CCCH-type containing 7A protein-coding ZC3H7A zinc finger CCCH-type containing 7A O zinc finger CCCH domain-containing protein 7A|zinc finger CCCH type domain containing 7|zinc finger CCCH-type domain containing 7|zinc-finger protein AY163807 20121230 -9606 29068 ZBTB44 - BTBD15|HSPC063|ZNF851 HGNC:25001|Ensembl:ENSG00000196323|HPRD:13692|Vega:OTTHUMG00000165769 11 11q24.3 zinc finger and BTB domain containing 44 protein-coding ZBTB44 zinc finger and BTB domain containing 44 O BTB (POZ) domain containing 15|BTB/POZ domain-containing protein 15|zinc finger and BTB domain-containing protein 44|zinc finger protein 851 20121230 -9606 29070 CCDC113 HSPC065 - HGNC:25002|Ensembl:ENSG00000103021|HPRD:07121|Vega:OTTHUMG00000133489 16 16q21 coiled-coil domain containing 113 protein-coding CCDC113 coiled-coil domain containing 113 O coiled-coil domain-containing protein 113 20121230 -9606 29071 C1GALT1C1 HSPC067 C1GALT2|C38H2-L1|COSMC|MST143 HGNC:24338|MIM:300611|Ensembl:ENSG00000171155|HPRD:06462|Vega:OTTHUMG00000022305 X Xq24 C1GALT1-specific chaperone 1 protein-coding C1GALT1C1 C1GALT1-specific chaperone 1 O C1Gal-T2|C38H2-like protein 1|beta 1,3-galactosyltransferase 2|core 1 beta1,3-galactosyltransferase 2|core 1 beta3-Gal-T2|core 1 beta3-galactosyltransferase-specific molecular chaperone 20121230 -9606 29072 SETD2 HSPC069 HBP231|HIF-1|HIP-1|HYPB|KMT3A|SET2|p231HBP HGNC:18420|MIM:612778|Ensembl:ENSG00000181555|HPRD:11043|Vega:OTTHUMG00000133514 3 3p21.31 SET domain containing 2 protein-coding SETD2 SET domain containing 2 O histone-lysine N-methyltransferase SETD2|huntingtin interacting protein 1|huntingtin yeast partner B|huntingtin-interacting protein B|lysine N-methyltransferase 3A 20121230 -9606 29074 MRPL18 HSPC071 L18mt|MRP-L18 HGNC:14477|MIM:611831|Ensembl:ENSG00000112110|HPRD:14744|Vega:OTTHUMG00000015942 6 6q25.3 mitochondrial ribosomal protein L18 protein-coding MRPL18 mitochondrial ribosomal protein L18 O 39S ribosomal protein L18, mitochondrial 20121230 -9606 29075 LINC00652 - HSPC072 HGNC:25003|HPRD:13693 20 20p11.23 long intergenic non-protein coding RNA 652 miscRNA LINC00652 long intergenic non-protein coding RNA 652 O - 20121230 -9606 29078 NDUFAF4 HSPC125 C6orf66|HRPAP20|My013|bA22L21.1 HGNC:21034|MIM:611776|Ensembl:ENSG00000123545|HPRD:10795|Vega:OTTHUMG00000015246 6 6q16.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 protein-coding NDUFAF4 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 O NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4|hormone-regulated proliferation-associated protein of 20 kDa|hormone-regulated proliferation-associated protein, 20 kDa 20121230 -9606 29079 MED4 RP11-90M2.2 ARC36|DRIP36|HSPC126|TRAP36|VDRIP HGNC:17903|MIM:605718|Ensembl:ENSG00000136146|HPRD:16145|Vega:OTTHUMG00000016891 13 13q14.2 mediator complex subunit 4 protein-coding MED4 mediator complex subunit 4 O TRAP/SMCC/PC2 subunit p36|activator-recruited cofactor 36 kDa component|mediator of RNA polymerase II transcription subunit 4|mediator, 34-kD subunit, homolog|vitamin D receptor-interacting protein, 36-kD|vitamin D3 receptor-interacting protein complex 36 kDa component 20121230 -9606 29080 CCDC59 HSPC128 BR22|TAP26 HGNC:25005|Ensembl:ENSG00000133773|HPRD:13696|Vega:OTTHUMG00000170251 12 12q21.31 coiled-coil domain containing 59 protein-coding CCDC59 coiled-coil domain containing 59 O TTF-1-associated protein 26|TTF-1-associated protein BR2|coiled-coil domain-containing protein 59|thyroid transcription factor 1-associated protein 26 20121230 -9606 29081 METTL5 DC3 HSPC133 HGNC:25006|Ensembl:ENSG00000138382|Vega:OTTHUMG00000154117 2 2q31.1 methyltransferase like 5 protein-coding METTL5 methyltransferase like 5 O methyltransferase-like protein 5 20121230 -9606 29082 CHMP4A CDA04 C14orf123|CHMP4|CHMP4B|HSPC134|SHAX2|SNF7|SNF7-1|VPS32-1|VPS32A HGNC:20274|MIM:610051|Ensembl:ENSG00000254505|HPRD:16597|Vega:OTTHUMG00000167036 14 14q12 charged multivesicular body protein 4A protein-coding CHMP4A charged multivesicular body protein 4A O SNF7 homolog associated with Alix-2|Snf7 homologue associated with Alix 2|charged multivesicular body protein 4a|chromatin modifying protein 4A|vacuolar protein sorting-associated protein 32-1 20121230 -9606 29083 GTPBP8 - HSPC135 HGNC:25007|Ensembl:ENSG00000163607|HPRD:13700|Vega:OTTHUMG00000159268 3 3q13.2 GTP-binding protein 8 (putative) protein-coding GTPBP8 GTP-binding protein 8 (putative) O GTP-binding protein 8 20121230 -9606 29085 PHPT1 RP11-216L13.10-005 CGI-202|HSPC141|PHP14|RP11-216L13.10|bA216L13.10 HGNC:30033|MIM:610167|Ensembl:ENSG00000054148|HPRD:17849|Vega:OTTHUMG00000020950 9 9q34.3 phosphohistidine phosphatase 1 protein-coding PHPT1 phosphohistidine phosphatase 1 O 14 kDa phosphohistidine phosphatase|1700008C22Rik|phosphohistidine phosphatase 14kDa|protein janus-A homolog|sex-regulated protein janus-a 20121230 -9606 29086 BABAM1 HSPC142 C19orf62|MERIT40|NBA1 HGNC:25008|MIM:612766|Ensembl:ENSG00000105393|HPRD:13702 19 19p13.11 BRISC and BRCA1 A complex member 1 protein-coding BABAM1 BRISC and BRCA1 A complex member 1 O BRCA1-A complex subunit MERIT40|BRISC and BRCA1-A complex member 1|mediator of RAP80 interactions and targeting subunit of 40 kDa|mediator of Rap80 interactions and targeting 40 kDa|new component of the BRCA1 A complex|new component of the BRCA1-A complex|new component of the BRCAA1 A complex 20121230 -9606 29087 THYN1 HSPC144 MDS012|MY105|THY28|THY28KD HGNC:29560|MIM:613739|Ensembl:ENSG00000151500|HPRD:18183|Vega:OTTHUMG00000167176 11 11q25 thymocyte nuclear protein 1 protein-coding THYN1 thymocyte nuclear protein 1 O thymocyte protein thy28 20121230 -9606 29088 MRPL15 HSPC145 L15mt|MRP-L15|MRP-L7|RPML7 HGNC:14054|MIM:611828|Ensembl:ENSG00000137547|HPRD:14742|Vega:OTTHUMG00000164315 8 8q11.2-q13 mitochondrial ribosomal protein L15 protein-coding MRPL15 mitochondrial ribosomal protein L15 O 39S ribosomal protein L15, mitochondrial 20121230 -9606 29089 UBE2T HSPC150 PIG50 HGNC:25009|MIM:610538|Ensembl:ENSG00000077152|HPRD:13704|Vega:OTTHUMG00000041392 1 1q32.1 ubiquitin-conjugating enzyme E2T (putative) protein-coding UBE2T ubiquitin-conjugating enzyme E2T (putative) O HSPC150 protein similar to ubiquitin-conjugating enzyme|cell proliferation-inducing gene 50 protein|ubiquitin carrier protein T|ubiquitin conjugating enzyme|ubiquitin-conjugating enzyme E2 T|ubiquitin-protein ligase T 20121230 -9606 29090 TIMM21 HSPC154 C18orf55|TIM21 HGNC:25010|Ensembl:ENSG00000075336|HPRD:13706|Vega:OTTHUMG00000132844 18 18q22.3 translocase of inner mitochondrial membrane 21 homolog (yeast) protein-coding TIMM21 translocase of inner mitochondrial membrane 21 homolog (yeast) O TIM21-like protein, mitochondrial|mitochondrial import inner membrane translocase subunit Tim21 20121230 -9606 29091 STXBP6 HSPC156 amisyn HGNC:19666|MIM:607958|Ensembl:ENSG00000168952|Vega:OTTHUMG00000140186 14 14q12 syntaxin binding protein 6 (amisyn) protein-coding STXBP6 syntaxin binding protein 6 (amisyn) O syntaxin-binding protein 6 20121230 -9606 29092 LINC00339 - HSPC157|NCRNA00339 HGNC:25011 1 1p36.12 long intergenic non-protein coding RNA 339 miscRNA LINC00339 long intergenic non-protein coding RNA 339 O - 20121230 -9606 29093 MRPL22 HSPC158 L22mt|MRP-L22|MRP-L25|RPML25 HGNC:14480|MIM:611835|Ensembl:ENSG00000082515|HPRD:14748|Vega:OTTHUMG00000130190 5 5q33.2 mitochondrial ribosomal protein L22 protein-coding MRPL22 mitochondrial ribosomal protein L22 O 39S ribosomal protein L22, mitochondrial|39S ribosomal protein L25, mitochondrial|L25mt 20121230 -9606 29094 LGALSL HSPC159 GRP HGNC:25012|Ensembl:ENSG00000119862|HPRD:13708|Vega:OTTHUMG00000129541 2 2p14 lectin, galactoside-binding-like protein-coding LGALSL lectin, galactoside-binding-like O galectin-related protein|lectin galactoside-binding-like protein 20121230 -9606 29095 ORMDL2 HSPC160 MST095|MSTP095|adoplin-2 HGNC:16037|MIM:610074|Ensembl:ENSG00000123353|HPRD:17802|Vega:OTTHUMG00000170202 12 12q13.2 ORM1-like 2 (S. cerevisiae) protein-coding ORMDL2 ORM1-like 2 (S. cerevisiae) O ORM1-like protein 2|expressed in normal aorta 20121230 -9606 29097 CNIH4 HSPC163 - HGNC:25013|Ensembl:ENSG00000143771|HPRD:13709|Vega:OTTHUMG00000037635 1 1q42.11 cornichon homolog 4 (Drosophila) protein-coding CNIH4 cornichon homolog 4 (Drosophila) O protein cornichon homolog 4 20121230 -9606 29098 RANGRF HSPC165 HSPC236|MOG1|RANGNRF HGNC:17679|MIM:607954|Ensembl:ENSG00000108961|HPRD:06407|Vega:OTTHUMG00000178473 17 17p13.1 RAN guanine nucleotide release factor protein-coding RANGRF RAN guanine nucleotide release factor O MOG1 homolog|ran guanine nucleotide release factor|ran-binding protein MOG1 20121230 -9606 29099 COMMD9 HSPC166 - HGNC:25014|MIM:612299|Ensembl:ENSG00000110442|HPRD:13087|Vega:OTTHUMG00000166333 11 11p13 COMM domain containing 9 protein-coding COMMD9 COMM domain containing 9 O COMM domain-containing protein 9 20121230 -9606 29100 TMEM208 HSPC171 - HGNC:25015|Ensembl:ENSG00000168701|HPRD:13710|Vega:OTTHUMG00000173064 16 16q22.1 transmembrane protein 208 protein-coding TMEM208 transmembrane protein 208 O - 20121230 -9606 29101 SSU72 RP5-832C2.2 HSPC182|PNAS-120 HGNC:25016|Ensembl:ENSG00000160075|HPRD:13712|Vega:OTTHUMG00000000576 1 1p36.33 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) protein-coding SSU72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) O CTD phosphatase SSU72|RNA polymerase II subunit A C-terminal domain phosphatase SSU72 20121230 -9606 29102 DROSHA - ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN HGNC:17904|MIM:608828|Ensembl:ENSG00000113360|HPRD:10196|Vega:OTTHUMG00000161976 5 5p13.3 drosha, ribonuclease type III protein-coding DROSHA drosha, ribonuclease type III O RNase III|drosha, double-stranded RNA-specific endoribonuclease|nuclear RNase III Drosha|p241|protein Drosha|putative protein p241 which interacts with transcription factor Sp1|putative ribonuclease III|ribonuclease 3|ribonuclease III, nuclear|ribonuclease type III, nuclear 20121230 -9606 29103 DNAJC15 GIG22 DNAJD1|HSD18|MCJ HGNC:20325|Ensembl:ENSG00000120675|HPRD:13238|Vega:OTTHUMG00000016813 13 13q14.1 DnaJ (Hsp40) homolog, subfamily C, member 15 protein-coding DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 O DNAJ domain-containing|DnaJ (Hsp40) homolog, subfamily D, member 1|cell growth-inhibiting gene 22 protein|dnaJ homolog subfamily C member 15|methylation-controlled J protein 20121230 -9606 29104 N6AMT1 PRED28 C21orf127|HEMK2|MTQ2|N6AMT HGNC:16021|MIM:614553|Ensembl:ENSG00000156239|HPRD:10739|Vega:OTTHUMG00000078750 21 21q21.3 N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative) O N6-DNA-methyltransferase|hemK methyltransferase family member 2|m.HsaHemK2P|n(6)-adenine-specific DNA methyltransferase 1 20121230 -9606 29105 C16orf80 - EVORF|GTL3|fSAP23 HGNC:29523|Ensembl:ENSG00000070761|HPRD:13616|Vega:OTTHUMG00000133490 16 16q21 chromosome 16 open reading frame 80 protein-coding C16orf80 chromosome 16 open reading frame 80 O UPF0468 protein C16orf80|functional spliceosome-associated protein 23|gene trap locus 3|transcription factor IIB 20121230 -9606 29106 SCG3 UNQ2502/PRO5990 SGIII HGNC:13707|MIM:611796|Ensembl:ENSG00000104112|HPRD:11538|Vega:OTTHUMG00000131748 15 15q21 secretogranin III protein-coding SCG3 secretogranin III O secretogranin-3 20121230 -9606 29107 NXT1 - MTR2|P15 HGNC:15913|MIM:605811|Ensembl:ENSG00000132661|HPRD:16159|Vega:OTTHUMG00000032059 20 20p12-p11.2 NTF2-like export factor 1 protein-coding NXT1 NTF2-like export factor 1 O NTF2-related export protein 1|NTX2-like export factor1|NUTF-like export factor 1|protein p15 20121230 -9606 29108 PYCARD - ASC|CARD5|TMS|TMS-1|TMS1 HGNC:16608|MIM:606838|Ensembl:ENSG00000103490|HPRD:06020|Vega:OTTHUMG00000176753 16 16p11.2 PYD and CARD domain containing protein-coding PYCARD PYD and CARD domain containing O apoptosis-associated speck-like protein containing a CARD|caspase recruitment domain-containing protein 5|target of methylation-induced silencing 1 20121230 -9606 29109 FHOD1 - FHOS HGNC:17905|MIM:606881|Ensembl:ENSG00000135723|HPRD:06049|Vega:OTTHUMG00000137521 16 16q22 formin homology 2 domain containing 1 protein-coding FHOD1 formin homology 2 domain containing 1 O FH1/FH2 domain-containing protein 1|formin homolog overexpressed in spleen 1 20121230 -9606 29110 TBK1 - NAK|T2K HGNC:11584|MIM:604834|Ensembl:ENSG00000183735|HPRD:05322|Vega:OTTHUMG00000168796 12 12q14.1 TANK-binding kinase 1 protein-coding TBK1 TANK-binding kinase 1 O NF-kB-activating kinase|NF-kappa-B-activating kinase|serine/threonine-protein kinase TBK1 20121230 -9606 29113 C6orf15 DADB-141O4.4 STG HGNC:13927|MIM:611401|Ensembl:ENSG00000204542|HPRD:12856|Vega:OTTHUMG00000031111 6 6p21.3 chromosome 6 open reading frame 15 protein-coding C6orf15 chromosome 6 open reading frame 15 O taste bud-specific protein|uncharacterized protein C6orf15 20121230 -9606 29114 TAGLN3 - NP22|NP25 HGNC:29868|MIM:607953|Ensembl:ENSG00000144834|HPRD:12136|Vega:OTTHUMG00000159281 3 3q13.2 transgelin 3 protein-coding TAGLN3 transgelin 3 O neuronal protein 22|neuronal protein NP25|transgelin-3 20121230 -9606 29115 SAP30BP - HCNGP|HTRG|HTRP HGNC:30785|MIM:610218|Ensembl:ENSG00000161526|HPRD:17094|Vega:OTTHUMG00000179798 17 17q25.1 SAP30 binding protein protein-coding SAP30BP SAP30 binding protein O HSV-1 binding|SAP30-binding protein|transcriptional regulator protein HCNGP 20121230 -9606 29116 MYLIP RP1-13D10.1 IDOL|MIR HGNC:21155|MIM:610082|Ensembl:ENSG00000007944|HPRD:17621|Vega:OTTHUMG00000016405 6 6p23-p22.3 myosin regulatory light chain interacting protein protein-coding MYLIP myosin regulatory light chain interacting protein O E3 ubiquitin ligase-inducible degrader of the low density lipoprotein receptor|E3 ubiquitin-protein ligase MYLIP|band 4.1 superfamily member BZF1|cellular modulator of immune recognition (c-MIR)|inducible degrader of the LDL-receptor|myosin regulatory light chain-interacting protein 20121230 -9606 29117 BRD7 - BP75|CELTIX1|NAG4 HGNC:14310|Ensembl:ENSG00000166164|Vega:OTTHUMG00000133170 16 16q12 bromodomain containing 7 protein-coding BRD7 bromodomain containing 7 O 75 kDa bromodomain protein|bromodomain-containing protein 7|protein CELTIX-1 20121230 -9606 29118 DDX25 - GRTH HGNC:18698|MIM:607663|Ensembl:ENSG00000109832|HPRD:06367|Vega:OTTHUMG00000165859 11 11q24 DEAD (Asp-Glu-Ala-Asp) box helicase 25 protein-coding DDX25 DEAD (Asp-Glu-Ala-Asp) box helicase 25 O ATP-dependent RNA helicase DDX25|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25|DEAD box protein 25|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 25|gonadotropin-regulated testicular RNA helicase 20121230 -9606 29119 CTNNA3 RP11-433J16.1 VR22 HGNC:2511|MIM:607667|Ensembl:ENSG00000183230|HPRD:09639|Vega:OTTHUMG00000018334 10 10q22.2 catenin (cadherin-associated protein), alpha 3 protein-coding CTNNA3 catenin (cadherin-associated protein), alpha 3 O alpha T-catenin|alpha-T-catenin|alpha-catenin-like protein|cadherin-associated protein|catenin alpha-3 20121230 -9606 29121 CLEC2D - CLAX|LLT1|OCIL HGNC:14351|MIM:605659|Ensembl:ENSG00000069493|HPRD:16134|Vega:OTTHUMG00000168369 12 12p13 C-type lectin domain family 2, member D protein-coding CLEC2D C-type lectin domain family 2, member D O C-type lectin domain family 2 member D|C-type lectin related f|C-type lectin superfamily 2, member D|LLT-1|lectin-like NK cell receptor|lectin-like transcript 1|osteoclast inhibitory lectin 20121230 -9606 29122 PRSS50 - CT20|TSP50 HGNC:17910|MIM:607950|Ensembl:ENSG00000206549|HPRD:06405 3 3p21.31 protease, serine, 50 protein-coding PRSS50 protease, serine, 50 O cancer/testis antigen 20|probable threonine protease PRSS50|serine protease 50|testes specific protease 50|testes-specific protease 50|testis-specific protease-like protein 50 20121230 -9606 29123 ANKRD11 - ANCO-1|ANCO1|LZ16|T13 HGNC:21316|MIM:611192|Ensembl:ENSG00000167522|HPRD:12456|Vega:OTTHUMG00000175548 16 16q24.3 ankyrin repeat domain 11 protein-coding ANKRD11 ankyrin repeat domain 11 O ankyrin repeat domain-containing protein 11|ankyrin repeat-containing cofactor 1|nasopharyngeal carcinoma susceptibility protein 20121230 -9606 29124 LGALS13 - GAL13|PLAC8|PP13 HGNC:15449|MIM:608717|Ensembl:ENSG00000105198|HPRD:16375 19 19q13.1 lectin, galactoside-binding, soluble, 13 protein-coding LGALS13 lectin, galactoside-binding, soluble, 13 O beta-galactoside-binding lectin|gal-13|galactoside-binding soluble lectin 13|galectin 13|galectin-13|placental protein 13|placental tissue protein 13 20121230 -9606 29125 C11orf21 - - HGNC:13231|MIM:611033|Ensembl:ENSG00000110665|Vega:OTTHUMG00000009759 11 11p15.5 chromosome 11 open reading frame 21 protein-coding C11orf21 chromosome 11 open reading frame 21 O uncharacterized protein C11orf21 20121230 -9606 29126 CD274 - B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1 HGNC:17635|MIM:605402|Ensembl:ENSG00000120217|HPRD:05655|Vega:OTTHUMG00000019503 9 9p24 CD274 molecule protein-coding CD274 CD274 molecule O B7 homolog 1|CD274 antigen|PDCD1 ligand 1|programmed cell death 1 ligand 1|programmed death ligand 1 20121230 -9606 29127 RACGAP1 - CYK4|HsCYK-4|ID-GAP|MgcRacGAP HGNC:9804|MIM:604980|Ensembl:ENSG00000161800|HPRD:05402|Vega:OTTHUMG00000169811 12 12q13.12 Rac GTPase activating protein 1 protein-coding RACGAP1 Rac GTPase activating protein 1 O GTPase activating protein|male germ cell RacGap|protein CYK4 homolg|rac GTPase-activating protein 1 20121230 -9606 29128 UHRF1 - ICBP90|Np95|RNF106|hNP95|hUHRF1 HGNC:12556|MIM:607990|HPRD:06992 19 19p13.3 ubiquitin-like with PHD and ring finger domains 1 protein-coding UHRF1 ubiquitin-like with PHD and ring finger domains 1 O E3 ubiquitin-protein ligase UHRF1|RING finger protein 106|huNp95|inverted CCAAT box-binding protein of 90 kDa|nuclear protein 95|nuclear zinc finger protein Np95|transcription factor ICBP90|ubiquitin-like PHD and RING finger domain-containing protein 1|ubiquitin-like, containing PHD and RING finger domains, 1|ubiquitin-like-containing PHD and RING finger domains protein 1 20121230 -9606 29760 BLNK - AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca HGNC:14211|MIM:604515|Ensembl:ENSG00000095585|HPRD:05153|Vega:OTTHUMG00000018827 10 10q23.2-q23.33 B-cell linker protein-coding BLNK B-cell linker O B cell adaptor containing SH2 domain|B cell linker protein|B-cell activation|B-cell adapter containing a SH2 domain protein|B-cell adapter containing a Src homology 2 domain protein|B-cell linker protein|Src homology 2 domain-containing leukocyte protein of 65 kDa|Src homology [SH2] domain-containing leukocyte protein of 65 kD|cytoplasmic adapter protein 20121230 -9606 29761 USP25 - USP21 HGNC:12624|MIM:604736|Ensembl:ENSG00000155313|HPRD:05296|Vega:OTTHUMG00000074343 21 21q11.2 ubiquitin specific peptidase 25 protein-coding USP25 ubiquitin specific peptidase 25 O USP on chromosome 21|deubiquitinating enzyme 25|ubiquitin carboxyl-terminal hydrolase 25|ubiquitin specific protease 25|ubiquitin thioesterase 25|ubiquitin thiolesterase 25|ubiquitin-specific processing protease 25|ubiquitin-specific-processing protease 25 20121230 -9606 29763 PACSIN3 - SDPIII HGNC:8572|MIM:606513|Ensembl:ENSG00000165912|HPRD:05937|Vega:OTTHUMG00000166870 11 11p12-p11.12 protein kinase C and casein kinase substrate in neurons 3 protein-coding PACSIN3 protein kinase C and casein kinase substrate in neurons 3 O SH3 domain-containing protein 6511|protein kinase C and casein kinase substrate in neurons protein 3|syndapin III 20121230 -9606 29764 DDU - - HGNC:2733|MIM:125630 19 19p dermo-distortive urticaria unknown DDU dermo-distortive urticaria O - 20110215 -9606 29765 TMOD4 RP11-68I18.7 SK-TMOD HGNC:11874|MIM:605834|Ensembl:ENSG00000163157|HPRD:16164|Vega:OTTHUMG00000012350 1 1q12 tropomodulin 4 (muscle) protein-coding TMOD4 tropomodulin 4 (muscle) O actin-capping protein|skeletal muscle tropomodulin|tropomodulin-4 20121230 -9606 29766 TMOD3 - UTMOD HGNC:11873|MIM:605112|Ensembl:ENSG00000138594|HPRD:10389|Vega:OTTHUMG00000131803 15 15q21.1-q21.2 tropomodulin 3 (ubiquitous) protein-coding TMOD3 tropomodulin 3 (ubiquitous) O tropomodulin-3|ubiquitous tropomodulin 20121230 -9606 29767 TMOD2 - N-TMOD|NTMOD HGNC:11872|MIM:602928|Ensembl:ENSG00000128872|HPRD:04237|Vega:OTTHUMG00000131805 15 15q21.2 tropomodulin 2 (neuronal) protein-coding TMOD2 tropomodulin 2 (neuronal) O neuronal tropomodulin|tropomodulin-2 20121230 -9606 29768 SDHDP6 - - HGNC:10689 1 1p36.11 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 6 pseudo SDHDP6 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 6 O - 20121230 -9606 29769 SDHDP5 - - HGNC:10688 2 2q32.1 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 5 pseudo SDHDP5 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 5 O - 20121230 -9606 29770 SDHDP4 - - HGNC:10687 3 3p21.3 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 4 pseudo SDHDP4 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 4 O - 20121230 -9606 29771 SDHDP3 - - HGNC:10686 3 3q26.3 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 3 pseudo SDHDP3 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 3 O - 20121230 -9606 29774 POM121L9P - DKFZP434P211|UNQ2565 HGNC:30080|HPRD:16807 22 22q11.22 POM121 transmembrane nucleoporin-like 9, pseudogene pseudo POM121L9P POM121 transmembrane nucleoporin-like 9, pseudogene O - 20121230 -9606 29775 CARD10 RP5-889J22__B.2 BIMP1|CARMA3 HGNC:16422|MIM:607209|Ensembl:ENSG00000100065|HPRD:06233|Vega:OTTHUMG00000150592 22 22q13.1 caspase recruitment domain family, member 10 protein-coding CARD10 caspase recruitment domain family, member 10 O Bcl10 binding protein and activator of NFKB|CARD-containing MAGUK 3 protein|CARD-containing MAGUK protein 3|carma 3|caspase recruitment domain-containing protein 10 20121230 -9606 29777 ABT1 - hABT1 HGNC:17369|Ensembl:ENSG00000146109|HPRD:16469|Vega:OTTHUMG00000016319 6 6p22.2 activator of basal transcription 1 protein-coding ABT1 activator of basal transcription 1 O TATA-binding protein-binding protein|basal transcriptional activator 20121230 -9606 29778 MAP2K1P1 - - HGNC:6841 8 8p21 mitogen-activated protein kinase kinase 1 pseudogene 1 pseudo MAP2K1P1 mitogen-activated protein kinase kinase 1 pseudogene 1 O - 20121230 -9606 29779 DFNA33 - - HGNC:2805|MIM:614211 13 13q34-qter deafness, autosomal dominant 33 unknown DFNA33 deafness, autosomal dominant 33 O - 20120622 -9606 29780 PARVB AL031595.1 CGI-56 HGNC:14653|MIM:608121|Ensembl:ENSG00000188677|HPRD:16284|Vega:OTTHUMG00000150665 22 22q13.2-q13.33 parvin, beta protein-coding PARVB parvin, beta O affixin|beta-parvin 20121230 -9606 29781 NCAPH2 - CAPH2 HGNC:25071|MIM:611230|Ensembl:ENSG00000025770|Vega:OTTHUMG00000150205 22 22q13.33 non-SMC condensin II complex, subunit H2 protein-coding NCAPH2 non-SMC condensin II complex, subunit H2 O CAP-H2 subunit of the condensin II complex|chromosome-associated protein H2|condensin-2 complex subunit H2|kleisin beta 20121230 -9606 29785 CYP2S1 UNQ891/PRO1906 - HGNC:15654|MIM:611529|Ensembl:ENSG00000167600|HPRD:07481 19 19q13.1 cytochrome P450, family 2, subfamily S, polypeptide 1 protein-coding CYP2S1 cytochrome P450, family 2, subfamily S, polypeptide 1 O CYPIIS1|cytochrome P450 2S1|cytochrome P450 family member predicted from ESTs|cytochrome P450, subfamily IIS, polypeptide 1|cytochrome P540, subfamily IIS, polypeptide 1 20121230 -9606 29789 OLA1 PTD004 DOC45|GBP45|GTBP9|GTPBP9 HGNC:28833|MIM:611175|Ensembl:ENSG00000138430|HPRD:15194|Vega:OTTHUMG00000132335 2 2q31.1 Obg-like ATPase 1 protein-coding OLA1 Obg-like ATPase 1 O DNA damage-regulated overexpressed in cancer 45 protein|GTP-binding protein 9 (putative)|GTP-binding protein PTD004|homologous yeast-44.2 protein|obg-like ATPase 1 20121230 -9606 29796 UQCR10 HSPC119 HSPC051|HSPC151|QCR9|UCCR7.2|UCRC HGNC:30863|MIM:610843|Ensembl:ENSG00000184076|HPRD:13691|Vega:OTTHUMG00000151283 22 22q12.2 ubiquinol-cytochrome c reductase, complex III subunit X protein-coding UQCR10 ubiquinol-cytochrome c reductase, complex III subunit X O cytochrome C1, nonheme 7kDa protein|cytochrome b-c1 complex subunit 9|cytochrome c1 non-heme 7 kDa protein|ubiquinol-cytochrome c reductase complex (7.2 kD)|ubiquinol-cytochrome c reductase complex 7.2 kDa protein|ubiquinol-cytochrome c reductase, complex III subunit X, 7.2kDa 20121230 -9606 29797 POM121L8P - DKFZp434K191 HGNC:35446|HPRD:18779 22 22q11.2 POM121 transmembrane nucleoporin-like 8 pseudogene pseudo POM121L8P POM121 transmembrane nucleoporin-like 8 pseudogene O - 20121230 -9606 29798 C2orf27A - C2orf27|C2orf27B HGNC:25077|Ensembl:ENSG00000197927|HPRD:12811|Vega:OTTHUMG00000131666 2 2q21.2 chromosome 2 open reading frame 27A protein-coding C2orf27A chromosome 2 open reading frame 27A O uncharacterized protein C2orf27 20121230 -9606 29799 YPEL1 FKSG3 - HGNC:12845|MIM:608082|Ensembl:ENSG00000100027|HPRD:16277|Vega:OTTHUMG00000150830 22 22q11.2 yippee-like 1 (Drosophila) protein-coding YPEL1 yippee-like 1 (Drosophila) O DiGeorge syndrome-related protein|protein yippee-like 1 20121230 -9606 29800 ZDHHC1 - C16orf1|HSU90653|ZNF377 HGNC:17916|Ensembl:ENSG00000159714|HPRD:15707|Vega:OTTHUMG00000137522 16 16q22.1 zinc finger, DHHC-type containing 1 protein-coding ZDHHC1 zinc finger, DHHC-type containing 1 O DHHC domain-containing cysteine-rich protein 1|DHHC-1|DHHC-domain-containing cysteine-rich protein|probable palmitoyltransferase ZDHHC1|zinc finger DHHC domain-containing protein 1|zinc finger protein 377|zinc finger, DHHC domain containing 1 20121230 -9606 29801 ZDHHC8 - DHHC8|ZDHHCL1|ZNF378 HGNC:18474|MIM:608784|Ensembl:ENSG00000099904|HPRD:12298|Vega:OTTHUMG00000150499 22 22q11.21 zinc finger, DHHC-type containing 8 protein-coding ZDHHC8 zinc finger, DHHC-type containing 8 O membrane-associated DHHC8 zinc finger protein|probable palmitoyltransferase ZDHHC8|zinc finger protein 378|zinc finger, DHHC domain like containing 1 20121230 -9606 29802 VPREB3 UNQ355/PRO619 8HS20|N27C7-2 HGNC:12710|MIM:605017|Ensembl:ENSG00000128218|HPRD:05426|Vega:OTTHUMG00000150738 22 22q11.23|22q11 pre-B lymphocyte 3 protein-coding VPREB3 pre-B lymphocyte 3 O pre-B lymphocyte gene 3|pre-B lymphocyte protein 3 20121230 -9606 29803 REPIN1 - AP4|RIP60|ZNF464|Zfp464 HGNC:17922|Ensembl:ENSG00000214022|HPRD:17966|Vega:OTTHUMG00000158330 7 7q36.1 replication initiator 1 protein-coding REPIN1 replication initiator 1 O 60 kDa origin-specific DNA-binding protein|60 kDa replication initiation region protein|ATT-binding protein|DHFR oribeta-binding protein RIP60|H_DJ0584D14.12|replication initiation region protein (60kD)|zinc finger protein 464 (RIP60)|zinc finger protein AP4 20121230 -9606 29841 GRHL1 - LBP32|MGR|NH32|TFCP2L2 HGNC:17923|MIM:609786|Ensembl:ENSG00000134317|HPRD:18176|Vega:OTTHUMG00000151704 2 2p25.1 grainyhead-like 1 (Drosophila) protein-coding GRHL1 grainyhead-like 1 (Drosophila) O LBP protein 32|grainyhead-like protein 1 homolog|mammalian grainyhead|transcription factor CP2-like 2|transcription factor LBP-32 20121230 -9606 29842 TFCP2L1 - CRTR1|LBP-9|LBP9 HGNC:17925|MIM:609785|Ensembl:ENSG00000115112|HPRD:18175|Vega:OTTHUMG00000131443 2 2q14 transcription factor CP2-like 1 protein-coding TFCP2L1 transcription factor CP2-like 1 O CP2-related transcriptional repressor 1|CRTR-1|transcription factor CP2-like protein 1|transcription factor LBP-9 20121230 -9606 29843 SENP1 - SuPr-2 HGNC:17927|MIM:612157|Ensembl:ENSG00000079387|HPRD:07153|Vega:OTTHUMG00000169896 12 12q13.1 SUMO1/sentrin specific peptidase 1 protein-coding SENP1 SUMO1/sentrin specific peptidase 1 O SUMO1/sentrin specific protease 1|sentrin-specific protease 1|sentrin/SUMO-specific protease SENP1 20121230 -9606 29844 TFPT - FB1|INO80F|amida HGNC:13630|MIM:609519|Ensembl:ENSG00000105619|HPRD:10266|Vega:OTTHUMG00000065906 19 19q13 TCF3 (E2A) fusion partner (in childhood Leukemia) protein-coding TFPT TCF3 (E2A) fusion partner (in childhood Leukemia) O INO80 complex subunit F|TCF3 fusion partner|amida, partner of the E2A 20121230 -9606 29850 TRPM5 - LTRPC5|MTR1 HGNC:14323|MIM:604600|Ensembl:ENSG00000070985|HPRD:16064|Vega:OTTHUMG00000009896 11 11p15.5 transient receptor potential cation channel, subfamily M, member 5 protein-coding TRPM5 transient receptor potential cation channel, subfamily M, member 5 O LTrpC-5|MLSN1 and TRP-related|MLSN1- and TRP-related gene 1 protein|long transient receptor potential channel 5|transient receptor potential cation channel subfamily M member 5 20121230 -9606 29851 ICOS - AILIM|CD278|CVID1 HGNC:5351|MIM:604558|Ensembl:ENSG00000163600|HPRD:09196|Vega:OTTHUMG00000132880 2 2q33 inducible T-cell co-stimulator protein-coding ICOS inducible T-cell co-stimulator O activation-inducible lymphocyte immunomediatory molecule|inducible T-cell costimulator|inducible costimulator 20121230 -9606 29855 UBN1 - VT|VT4 HGNC:12506|MIM:609771|Ensembl:ENSG00000118900|HPRD:11660|Vega:OTTHUMG00000129531 16 16p13.3 ubinuclein 1 protein-coding UBN1 ubinuclein 1 O HIRA-binding protein|ubinuclein-1|ubiquitously expressed nuclear protein 20121230 -9606 29880 ALG5 HSPC149 RP11-421P11.2|bA421P11.2 HGNC:20266|MIM:604565|Ensembl:ENSG00000120697|HPRD:05193|Vega:OTTHUMG00000016741 13 13q13.3 asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae) protein-coding ALG5 asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae) O Alg5, S. cerevisiae, homolog of|asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase)|asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)|asparagine-linked glycosylation protein 5 homolog|dolP-glucosyltransferase|dolichyl phosphate glucosyltransferase|dolichyl-phosphate beta-glucosyltransferase 20121230 -9606 29881 NPC1L1 - NPC11L1 HGNC:7898|MIM:608010|Ensembl:ENSG00000015520|HPRD:09725|Vega:OTTHUMG00000023691 7 7p13 NPC1-like 1 protein-coding NPC1L1 NPC1-like 1 O NPC1 (Niemann-Pick disease, type C1, gene)-like 1|Niemann-Pick C1-like protein 1 20121230 -9606 29882 ANAPC2 - APC2|RP11-350O14.5 HGNC:19989|MIM:606946|Ensembl:ENSG00000176248|HPRD:07367|Vega:OTTHUMG00000020983 9 9q34.3 anaphase promoting complex subunit 2 protein-coding ANAPC2 anaphase promoting complex subunit 2 O anaphase-promoting complex subunit 2|cyclosome subunit 2 20121230 -9606 29883 CNOT7 - CAF1|hCAF-1 HGNC:14101|MIM:604913|Ensembl:ENSG00000198791|Vega:OTTHUMG00000096971 8 8p22-p21.3 CCR4-NOT transcription complex, subunit 7 protein-coding CNOT7 CCR4-NOT transcription complex, subunit 7 O BTG1 binding factor 1|BTG1-binding factor 1|CAF-1|CCR4-NOT transcription complex subunit 7|CCR4-associated factor 1|carbon catabolite repressor protein (CCR4)-associative factor 1 20121230 -9606 29886 SNX8 - Mvp1 HGNC:14972|MIM:614905|Ensembl:ENSG00000106266|HPRD:11592|Vega:OTTHUMG00000151512 7 7p22.3 sorting nexin 8 protein-coding SNX8 sorting nexin 8 O sorting nexin-8 20121230 -9606 29887 SNX10 - - HGNC:14974|MIM:614780|Ensembl:ENSG00000086300|HPRD:15409|Vega:OTTHUMG00000023650 7 7p15.2 sorting nexin 10 protein-coding SNX10 sorting nexin 10 O sorting nexin-10 20121230 -9606 29888 STRN4 - ZIN|zinedin HGNC:15721|MIM:614767|Ensembl:ENSG00000090372|HPRD:18125 19 19q13.2 striatin, calmodulin binding protein 4 protein-coding STRN4 striatin, calmodulin binding protein 4 O striatin-4 20121230 -9606 29889 GNL2 - HUMAUANTIG|NGP1|Ngp-1 HGNC:29925|MIM:609365|Ensembl:ENSG00000134697|HPRD:11006|Vega:OTTHUMG00000004322 1 1p34.3 guanine nucleotide binding protein-like 2 (nucleolar) protein-coding GNL2 guanine nucleotide binding protein-like 2 (nucleolar) O autoantigen NGP-1|novel nucleolar guanosine 5'-triphosphate binding protein autoantigen|nucleolar G-protein gene 1|nucleolar GTP-binding protein 2|nucleolar GTPase 20121230 -9606 29890 RBM15B - HUMAGCGB|OTT3 HGNC:24303|MIM:612602|Ensembl:ENSG00000179837|HPRD:11486|Vega:OTTHUMG00000156896 3 3p21.2 RNA binding motif protein 15B protein-coding RBM15B RNA binding motif protein 15B O RNA-binding motif protein 15B|chromosome 3p21.1 gene sequence|huOTT3|one twenty two protein 3|one-twenty two protein 3|putative RNA-binding protein 15B 20121230 -9606 29893 PSMC3IP - GT198|HOP2|HUMGT198A|ODG3|TBPIP HGNC:17928|MIM:608665|Ensembl:ENSG00000131470|HPRD:16362|Vega:OTTHUMG00000180247 17 17q21.2 PSMC3 interacting protein protein-coding PSMC3IP PSMC3 interacting protein O DBD-interacting|TBP-1-interacting protein|homologous-pairing protein 2 homolog|nuclear receptor coactivator GT198|proteasome 26S ATPase subunit 3-interacting protein|tat-binding protein 1-interacting protein 20121230 -9606 29894 CPSF1 - CPSF160|HSU37012|P/cl.18 HGNC:2324|MIM:606027|Ensembl:ENSG00000071894|HPRD:05823|Vega:OTTHUMG00000165170 8 8q24.23 cleavage and polyadenylation specific factor 1, 160kDa protein-coding CPSF1 cleavage and polyadenylation specific factor 1, 160kDa O CPSF 160 kDa subunit|cleavage and polyadenylation specificity factor 160 kDa subunit|cleavage and polyadenylation specificity factor subunit 1|polyadenylation specificity factor 20121230 -9606 29895 MYLPF - HUMMLC2B|MRLC2|MYL11 HGNC:29824|Ensembl:ENSG00000180209|HPRD:13721|Vega:OTTHUMG00000132399 16 16p11.2 myosin light chain, phosphorylatable, fast skeletal muscle protein-coding MYLPF myosin light chain, phosphorylatable, fast skeletal muscle O MLC2B|fast skeletal myosin light chain 2|myosin light chain 2|myosin regulatory light chain 2, skeletal muscle isoform|myosin, light chain 11, regulatory 20121230 -9606 29896 TRA2A - AWMS1|HSU53209 HGNC:16645|MIM:602718|Ensembl:ENSG00000164548|HPRD:04096|Vega:OTTHUMG00000128459 7 7p15.3 transformer 2 alpha homolog (Drosophila) protein-coding TRA2A transformer 2 alpha homolog (Drosophila) O TRA-2 alpha|TRA2-alpha|Tra2alpha|htra-2 alpha|htra-2-alpha|putative MAPK activating protein PM24|transformer-2 alpha|transformer-2 protein homolog A|transformer-2 protein homolog alpha 20121230 -9606 29899 GPSM2 RP11-475E11.4 CMCS|DFNB82|LGN|PINS HGNC:29501|MIM:609245|Ensembl:ENSG00000121957|HPRD:06609|Vega:OTTHUMG00000011730 1 1p13.3 G-protein signaling modulator 2 protein-coding GPSM2 G-protein signaling modulator 2 O G-protein signalling modulator 2 (AGS3-like, C. elegans)|G-protein-signaling modulator 2|mosaic protein LGN 20121230 -9606 29901 SAC3D1 - HSU79266|SHD1 HGNC:30179|Ensembl:ENSG00000168061|HPRD:11558 11 11q13.1 SAC3 domain containing 1 protein-coding SAC3D1 SAC3 domain containing 1 O SAC3 domain-containing protein 1|SAC3 homology domain-containing protein 1|Sac3 homology domain 1 20121230 -9606 29902 FAM216A - C12orf24|HSU79274 HGNC:30180|Ensembl:ENSG00000204856|HPRD:17119|Vega:OTTHUMG00000169526 12 12q24.11 family with sequence similarity 216, member A protein-coding FAM216A family with sequence similarity 216, member A O protein FAM216A|protein predicted by clone 23733|uncharacterized protein C12orf24 20121230 -9606 29903 CCDC106 - HSU79303|ZNF581 HGNC:30181|MIM:613478|Ensembl:ENSG00000173581|HPRD:09995|Vega:OTTHUMG00000180907 19 19q13.42 coiled-coil domain containing 106 protein-coding CCDC106 coiled-coil domain containing 106 O coiled-coil domain-containing protein 106|protein predicted by clone 23882 20121230 -9606 29904 EEF2K - HSU93850|eEF-2K HGNC:24615|MIM:606968|Ensembl:ENSG00000103319|HPRD:07369|Vega:OTTHUMG00000094771 16 16p12.2 eukaryotic elongation factor-2 kinase protein-coding EEF2K eukaryotic elongation factor-2 kinase O calcium/calmodulin-dependent eukaryotic elongation factor 2 kinase|calcium/calmodulin-dependent eukaryotic elongation factor-2 kinase|calmodulin-dependent protein kinase III|eEF-2 kinase|elongation factor-2 kinase|eukaroytic elongation factor 2 kinase|eukaryotic elongation factor 2 kinase 20121230 -9606 29906 ST8SIA5 - SIAT8E|ST8SiaV HGNC:17827|MIM:607162|Ensembl:ENSG00000101638|HPRD:06199|Vega:OTTHUMG00000132643 18 18q21.1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 O SIAT8-E|alpha-2,8-sialyltransferase 8E|sialyltransferase 8E (alpha-2, 8-polysialytransferase)|sialytransferase St8Sia V 20121230 -9606 29907 SNX15 hCG_23393 HSAF001435 HGNC:14978|MIM:605964|Ensembl:ENSG00000110025|HPRD:12073|Vega:OTTHUMG00000037387 11 11q12 sorting nexin 15 protein-coding SNX15 sorting nexin 15 O clone iota unknown protein|sorting nexin-15 20121230 -9606 29909 GPR171 - H963 HGNC:30057|Ensembl:ENSG00000174946|HPRD:17071|Vega:OTTHUMG00000159861 3 3q25.1 G protein-coupled receptor 171 protein-coding GPR171 G protein-coupled receptor 171 O F730001G15Rik|G-protein coupled receptor H963|platelet activating receptor homolog|probable G-protein coupled receptor 171 20121230 -9606 29911 HOOK2 - HK2 HGNC:19885|MIM:607824|Ensembl:ENSG00000095066|HPRD:09698|Vega:OTTHUMG00000180372 19 19p13.2 hook homolog 2 (Drosophila) protein-coding HOOK2 hook homolog 2 (Drosophila) O h-hook2|hHK2|protein Hook homolog 2 20121230 -9606 29914 UBIAD1 - RP4-796F18.1|SCCD|TERE1 HGNC:30791|MIM:611632|Ensembl:ENSG00000120942|HPRD:15487|Vega:OTTHUMG00000002075 1 1p36.22 UbiA prenyltransferase domain containing 1 protein-coding UBIAD1 UbiA prenyltransferase domain containing 1 O transitional epithelia response protein|transitional epithelial response protein 1|ubiA prenyltransferase domain-containing protein 1 20121230 -9606 29915 HCFC2 - HCF-2|HCF2 HGNC:24972|MIM:607926|Ensembl:ENSG00000111727|HPRD:06393|Vega:OTTHUMG00000170175 12 12q23.3 host cell factor C2 protein-coding HCFC2 host cell factor C2 O C2 factor|host cell factor 2 20121230 -9606 29916 SNX11 - - HGNC:14975|MIM:614906|Ensembl:ENSG00000002919|HPRD:15410|Vega:OTTHUMG00000178822 17 17q21.32 sorting nexin 11 protein-coding SNX11 sorting nexin 11 O sorting nexin-11 20121230 -9606 29919 C18orf8 - HsT2591|MIC1|Mic-1 HGNC:24326|Ensembl:ENSG00000141452|HPRD:12693|Vega:OTTHUMG00000179239 18 18q11.2 chromosome 18 open reading frame 8 protein-coding C18orf8 chromosome 18 open reading frame 8 O colon cancer associated protein Mic1|colon cancer-associated protein Mic1|uncharacterized protein C18orf8 20121230 -9606 29920 PYCR2 RP4-559A3.4 P5CR2 HGNC:30262|Ensembl:ENSG00000143811|HPRD:17939|Vega:OTTHUMG00000037506 1 1q42.12 pyrroline-5-carboxylate reductase family, member 2 protein-coding PYCR2 pyrroline-5-carboxylate reductase family, member 2 O P5C reductase 2|pyrroline 5-carboxylate reductase isoform|pyrroline-5-carboxylate reductase 2 20121230 -9606 29922 NME7 - MN23H7|nm23-H7 HGNC:20461|MIM:613465|Ensembl:ENSG00000143156|HPRD:11394|Vega:OTTHUMG00000034586 1 1q24 NME/NM23 family member 7 protein-coding NME7 NME/NM23 family member 7 O NDK 7|NDP kinase 7|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)|nucleoside diphosphate kinase 7|nucleoside-diphosphate kinase 7 20121230 -9606 29923 HILPDA - C7orf68|HIG-2|HIG2 HGNC:28859|Ensembl:ENSG00000135245|HPRD:17105|Vega:OTTHUMG00000157712 7 7q32.1 hypoxia inducible lipid droplet-associated protein-coding HILPDA hypoxia inducible lipid droplet-associated O hypoxia inducible gene 2|hypoxia-inducible gene 2 protein|hypoxia-inducible lipid droplet-associated protein|hypoxia-inducible protein 2 20121230 -9606 29924 EPN1 - - HGNC:21604|MIM:607262|Ensembl:ENSG00000063245|HPRD:06270|Vega:OTTHUMG00000180911 19 19q13.42 epsin 1 protein-coding EPN1 epsin 1 O EH domain-binding mitotic phosphoprotein|EPS-15-interacting protein 1|epsin-1 20121230 -9606 29925 GMPPB - - HGNC:22932|Ensembl:ENSG00000173540|HPRD:13589|Vega:OTTHUMG00000158151 3 3p21.31 GDP-mannose pyrophosphorylase B protein-coding GMPPB GDP-mannose pyrophosphorylase B O GTP-mannose-1-phosphate guanylyltransferase beta|mannose-1-phosphate guanyltransferase beta|mannose-1-phosphate guanylyltransferase 20121230 -9606 29926 GMPPA - - HGNC:22923|Ensembl:ENSG00000144591|HPRD:13588|Vega:OTTHUMG00000058922 2 2q35 GDP-mannose pyrophosphorylase A protein-coding GMPPA GDP-mannose pyrophosphorylase A O GTP-mannose-1-phosphate guanylyltransferase alpha|mannose-1-phosphate guanyltransferase alpha|mannose-1-phosphate guanylyltransferase (GDP) 20121230 -9606 29927 SEC61A1 - HSEC61|SEC61|SEC61A HGNC:18276|MIM:609213|Ensembl:ENSG00000058262|HPRD:15316|Vega:OTTHUMG00000159624 3 3q21.3 Sec61 alpha 1 subunit (S. cerevisiae) protein-coding SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) O Sec61 alpha-1|protein transport protein SEC61 alpha subunit|protein transport protein Sec61 subunit alpha|protein transport protein Sec61 subunit alpha isoform 1|sec61 homolog 20121230 -9606 29928 TIMM22 - TEX4|TIM22 HGNC:17317|MIM:607251|Ensembl:ENSG00000177370|HPRD:06262|Vega:OTTHUMG00000180175 17 17p13 translocase of inner mitochondrial membrane 22 homolog (yeast) protein-coding TIMM22 translocase of inner mitochondrial membrane 22 homolog (yeast) O mitochondrial import inner membrane translocase subunit Tim22|putative membrane protein|testis-expressed sequence 4 20121230 -9606 29929 ALG6 My046 CDG1C HGNC:23157|MIM:604566|Ensembl:ENSG00000088035|HPRD:05194|Vega:OTTHUMG00000009140 1 1p31.3 asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae) protein-coding ALG6 asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae) O Man(9)GlcNAc(2)-PP-Dol alpha-1,3-glucosyltransferase|asparagine-linked glycosylation 6 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase)|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3-glucosyltransferase)|asparagine-linked glycosylation protein 6 homolog|dol-P-Glc:Man(9)GlcNAc(2)-PP-Dol alpha-1,3-glucosyltransferase|dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase|dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase|dolichyl-P-Glc:Man9GlcNAc2-PP-dolichylglucosyltransferase 20121230 -9606 29930 PCDHB1 - PCDH-BETA1 HGNC:8680|MIM:606327|Ensembl:ENSG00000171815|HPRD:08397|Vega:OTTHUMG00000129627 5 5q31 protocadherin beta 1 protein-coding PCDHB1 protocadherin beta 1 O PCDH-beta-1|protocadherin beta-1 20121230 -9606 29931 LINC00312 NAG7 ERR-10|ERR10|LOH3CR2A|NAG-7|NCRNA00312 HGNC:6662|MIM:610485|HPRD:17440 3 3p25.3 long intergenic non-protein coding RNA 312 miscRNA LINC00312 long intergenic non-protein coding RNA 312 O - 20121230 -9606 29933 GPR132 - G2A HGNC:17482|MIM:606167|Ensembl:ENSG00000183484|HPRD:06936|Vega:OTTHUMG00000140173 14 14q32.3 G protein-coupled receptor 132 protein-coding GPR132 G protein-coupled receptor 132 O G protein-coupled receptor G2A|G2 accumulation protein|probable G-protein coupled receptor 132 20121230 -9606 29934 SNX12 - - HGNC:14976|MIM:300883|Ensembl:ENSG00000147164|HPRD:06719|Vega:OTTHUMG00000021786 X Xq13.1 sorting nexin 12 protein-coding SNX12 sorting nexin 12 O sorting nexin-12 20121230 -9606 29935 RPA4 RP1-117P19.1 HSU24186 HGNC:30305|MIM:300767|Ensembl:ENSG00000204086|HPRD:06591|Vega:OTTHUMG00000021987 X Xq21.33 replication protein A4, 30kDa protein-coding RPA4 replication protein A4, 30kDa O RF-A protein 4|RP-A p30|replication factor A protein 4|replication protein A 30 kDa subunit|replication protein A complex 34 kd subunit homolog Rpa4|replication protein A4, 34kDa 20121230 -9606 29937 NENF - CIR2|SCIRP10|SPUF HGNC:30384|MIM:611874|Ensembl:ENSG00000117691|HPRD:11603|Vega:OTTHUMG00000036744 1 1q32.3 neudesin neurotrophic factor protein-coding NENF neudesin neurotrophic factor O SCIRP10-related protein|Spinal cord injury related protein 10|cell growth-inhibiting protein 47|cell immortalization-related protein 2|neudesin|neuron-derived neurotrophic factor|secreted protein of unknown function 20121230 -9606 29940 DSE - DSEP|DSEPI|SART-2|SART2 HGNC:21144|MIM:605942|Ensembl:ENSG00000111817|HPRD:05807|Vega:OTTHUMG00000015434 6 6q22 dermatan sulfate epimerase protein-coding DSE dermatan sulfate epimerase O DS epimerase|chondroitin-glucuronate 5-epimerase|dermatan-sulfate epimerase|squamous cell carcinoma antigen recognized by T cells 2|squamous cell carcinoma antigen recognized by T-cells 2 20121230 -9606 29941 PKN3 - RP11-545E17.1 HGNC:17999|MIM:610714|Ensembl:ENSG00000160447|HPRD:17856|Vega:OTTHUMG00000020757 9 9q34.11 protein kinase N3 protein-coding PKN3 protein kinase N3 O protein kinase PKN-beta|protein-kinase C-related kinase 3|serine/threonine-protein kinase N3 20121230 -9606 29942 PURG - PURG-A|PURG-B HGNC:17930|Ensembl:ENSG00000172733|HPRD:17933|Vega:OTTHUMG00000157357 8 8p11 purine-rich element binding protein G protein-coding PURG purine-rich element binding protein G O Pur-gamma|purine-rich element-binding protein gamma 20121230 -9606 29943 PADI1 - HPAD10|PAD1|PDI|PDI1 HGNC:18367|MIM:607934|Ensembl:ENSG00000142623|HPRD:06395|Vega:OTTHUMG00000002294 1 1p36.13 peptidyl arginine deiminase, type I protein-coding PADI1 peptidyl arginine deiminase, type I O hPAD-colony 10|peptidylarginine deiminase I|protein-arginine deiminase type I|protein-arginine deiminase type-1 20121230 -9606 29944 PNMA3 - MA3|MA5 HGNC:18742|MIM:300675|Ensembl:ENSG00000183837|HPRD:06677 X Xq28 paraneoplastic Ma antigen 3 protein-coding PNMA3 paraneoplastic Ma antigen 3 O paraneoplastic antigen Ma3|paraneoplastic cancer-testis-brain antigen 20121230 -9606 29945 ANAPC4 - APC4 HGNC:19990|MIM:606947|Ensembl:ENSG00000053900|HPRD:09505|Vega:OTTHUMG00000097753 4 4p15.2 anaphase promoting complex subunit 4 protein-coding ANAPC4 anaphase promoting complex subunit 4 O anaphase-promoting complex subunit 4|cyclosome subunit 4 20121230 -9606 29946 SERTAD3 - RBT1 HGNC:17931|MIM:612125|Ensembl:ENSG00000167565|HPRD:15327 19 19q13.2 SERTA domain containing 3 protein-coding SERTAD3 SERTA domain containing 3 O RPA-binding trans-activator|SERTA domain-containing protein 3|replication protein-binding trans-activator 20121230 -9606 29947 DNMT3L - - HGNC:2980|MIM:606588|Ensembl:ENSG00000142182|HPRD:09417|Vega:OTTHUMG00000086914 21 21q22.3 DNA (cytosine-5-)-methyltransferase 3-like protein-coding DNMT3L DNA (cytosine-5-)-methyltransferase 3-like O DNA (cytosine-5)-methyltransferase 3-like|cytosine-5-methyltransferase 3-like protein|human cytosine-5-methyltransferase 3-like protein 20121230 -9606 29948 OSGIN1 - BDGI|OKL38 HGNC:30093|MIM:607975|Ensembl:ENSG00000140961|HPRD:06412|Vega:OTTHUMG00000137640 16 16q23.3 oxidative stress induced growth inhibitor 1 protein-coding OSGIN1 oxidative stress induced growth inhibitor 1 O bone marrow stromal cell-derived growth inhibitor|ovary, kidney and liver protein 38|oxidative stress-induced growth inhibitor 1|pregnancy-induced growth inhibitor OKL38 20121230 -9606 29949 IL19 RP11-262N9.2 IL-10C|MDA1|NG.1|ZMDA1 HGNC:5990|MIM:605687|Ensembl:ENSG00000142224|HPRD:05747|Vega:OTTHUMG00000036387 1 1q32.2 interleukin 19 protein-coding IL19 interleukin 19 O interleukin-19|melanoma differentiation associated protein-like protein|melanoma differentiation-associated protein-like protein 20121230 -9606 29950 SERTAD1 - SEI1|TRIP-Br1 HGNC:17932|Ensembl:ENSG00000197019|HPRD:15326 19 19q13.1-q13.2 SERTA domain containing 1 protein-coding SERTAD1 SERTA domain containing 1 O CDK4-binding protein p34SEI|CDK4-binding protein p34SEI1|SEI-1|SERTA domain-containing protein 1|transcriptional regulator interacting with the PHD-bromodomain 1 20121230 -9606 29951 PDZRN4 - LNX4|SAMCAP3L HGNC:30552|MIM:609730|Ensembl:ENSG00000165966|HPRD:15116|Vega:OTTHUMG00000169364 12 12q12 PDZ domain containing ring finger 4 protein-coding PDZRN4 PDZ domain containing ring finger 4 O IMAGE5767589|PDZ domain-containing RING finger protein 4|SEMACAP3-like protein|ligand of Numb protein X 4 20121230 -9606 29952 DPP7 - DPP2|DPPII|QPP HGNC:14892|MIM:610537|Ensembl:ENSG00000176978|HPRD:07634|Vega:OTTHUMG00000020977 9 9q34.3 dipeptidyl-peptidase 7 protein-coding DPP7 dipeptidyl-peptidase 7 O DPP II|carboxytripeptidase|dipeptidyl aminopeptidase II|dipeptidyl arylamidase II|dipeptidyl peptidase 2|dipeptidyl peptidase II|dipeptidyl-peptidase II|quiescent cell proline dipeptidase 20121230 -9606 29953 TRHDE UNQ2507/PRO5995 PAP-II|PGPEP2|TRH-DE HGNC:30748|MIM:606950|Ensembl:ENSG00000072657|HPRD:09506|Vega:OTTHUMG00000169642 12 12q15-q21 thyrotropin-releasing hormone degrading enzyme protein-coding TRHDE thyrotropin-releasing hormone degrading enzyme O TRH-degrading ectoenzyme|TRH-specific aminopeptidase|pyroglutamyl aminopeptidase II|pyroglutamyl-peptidase II|thyroliberinase|thyrotropin-releasing hormone degrading ectoenzyme|thyrotropin-releasing hormone-degrading ectoenzyme 20121230 -9606 29954 POMT2 - LGMD2N|MDDGA2|MDDGB2|MDDGC2 HGNC:19743|MIM:607439|Ensembl:ENSG00000009830|HPRD:09592|Vega:OTTHUMG00000171556 14 14q24 protein-O-mannosyltransferase 2 protein-coding POMT2 protein-O-mannosyltransferase 2 O dolichyl-phosphate-mannose--protein mannosyltransferase 2|protein O-mannosyl-transferase 2 20121230 -9606 29956 CERS2 RP11-316M1.2 L3|LASS2|SP260|TMSG1 HGNC:14076|MIM:606920|Ensembl:ENSG00000143418|HPRD:06080|Vega:OTTHUMG00000035064 1 1q21.3 ceramide synthase 2 protein-coding CERS2 ceramide synthase 2 O LAG1 homolog, ceramide synthase 2|LAG1 longevity assurance 2|longevity assurance (LAG1, S. cerevisiae) homolog 2|tumor metastasis-suppressor gene 1 protein 20121230 -9606 29957 SLC25A24 RP11-356N1.3 APC1|SCAMC-1 HGNC:20662|MIM:608744|Ensembl:ENSG00000085491|HPRD:12290|Vega:OTTHUMG00000011013 1 1p13.3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 protein-coding SLC25A24 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 O calcium-binding mitochondrial carrier protein SCaMC-1|calcium-binding transporter|mitochondrial ATP-Mg/Pi carrier protein 1|mitochondrial Ca(2+)-dependent solute carrier protein 1|short calcium-binding mitochondrial carrier 1|small calcium-binding mitochondrial carrier protein 1 20121230 -9606 29958 DMGDH - DMGDHD|ME2GLYDH HGNC:24475|MIM:605849|Ensembl:ENSG00000132837|HPRD:05789|Vega:OTTHUMG00000108159 5 5q14.1 dimethylglycine dehydrogenase protein-coding DMGDH dimethylglycine dehydrogenase O dimethylglycine dehydrogenase, mitochondrial 20121230 -9606 29959 NRBP1 - BCON3|MADM|MUDPNP|NRBP HGNC:7993|MIM:606010|Ensembl:ENSG00000115216|HPRD:05819|Vega:OTTHUMG00000097789 2 2p23 nuclear receptor binding protein 1 protein-coding NRBP1 nuclear receptor binding protein 1 O multiple domain putative nuclear protein|myeloid leukemia factor 1 adaptor molecule|nuclear receptor-binding protein 20121230 -9606 29960 FTSJ2 - FJH1|MRM2 HGNC:16352|MIM:606906|Ensembl:ENSG00000122687|HPRD:06067|Vega:OTTHUMG00000023866 7 7p22 FtsJ RNA methyltransferase homolog 2 (E. coli) protein-coding FTSJ2 FtsJ RNA methyltransferase homolog 2 (E. coli) O FtsJ homolog 2|MRM2 RNA methyltransferase homolog|cell division protein FtsJ|protein ftsJ homolog 2|putative ribosomal RNA methyltransferase 2|rRNA (uridine-2'-O-)-methyltransferase 20121230 -9606 29964 PRICKLE4 RP11-298J23.3 C6orf49|OBTP|OEBT|TOMM6 HGNC:16805|MIM:611389|Ensembl:ENSG00000124593|HPRD:12884|Vega:OTTHUMG00000014685 6 6p21.31 prickle homolog 4 (Drosophila) protein-coding PRICKLE4 prickle homolog 4 (Drosophila) O over-expressed breast tumor protein|overexpressed breast tumor protein|prickle-like protein 4|translocase of outer mitochondrial membrane 6 homolog 20121230 -9606 29965 CDIP1 - C16orf5|CDIP|I1|LITAFL HGNC:13234|MIM:610503|Ensembl:ENSG00000089486|HPRD:12676|Vega:OTTHUMG00000177172 16 16p13.3 cell death-inducing p53 target 1 protein-coding CDIP1 cell death-inducing p53 target 1 O LITAF-like protein|cell death inducing protein|cell death involved p53-target|cell death-inducing protein|transmembrane protein I1 20121230 -9606 29966 STRN3 - SG2NA HGNC:15720|MIM:614766|Ensembl:ENSG00000196792|HPRD:11613|Vega:OTTHUMG00000140201 14 14q13-q21 striatin, calmodulin binding protein 3 protein-coding STRN3 striatin, calmodulin binding protein 3 O cell cycle S/G2 nuclear autoantigen|cell cycle autoantigen SG2NA|nuclear autoantigen|s/G2 antigen|striatin-3 20121230 -9606 29967 LRP12 - ST7 HGNC:31708|Ensembl:ENSG00000147650|HPRD:17447|Vega:OTTHUMG00000164892 8 8q22.2 low density lipoprotein receptor-related protein 12 protein-coding LRP12 low density lipoprotein receptor-related protein 12 O low-density lipoprotein receptor-related protein 12|suppressor of tumorigenicity 7 protein 20121230 -9606 29968 PSAT1 - EPIP|PSA|PSAT HGNC:19129|MIM:610936|Ensembl:ENSG00000135069|HPRD:17918|Vega:OTTHUMG00000020066 9 9q21.2 phosphoserine aminotransferase 1 protein-coding PSAT1 phosphoserine aminotransferase 1 O endometrial progesterone-induced protein|phosphohydroxythreonine aminotransferase|phosphoserine aminotransferase 20121230 -9606 29969 MDFIC - HIC HGNC:28870|MIM:614511|Ensembl:ENSG00000135272|HPRD:17103|Vega:OTTHUMG00000023647 7 7q31.1-q31.2 MyoD family inhibitor domain containing protein-coding MDFIC MyoD family inhibitor domain containing O I-mfa domain-containing protein|myoD family inhibitor domain-containing protein 20121230 -9606 29970 SCHIP1 - SCHIP-1 HGNC:15678|Ensembl:ENSG00000151967|Ensembl:ENSG00000250588|HPRD:15302|Vega:OTTHUMG00000158934|Vega:OTTHUMG00000162426 3 3q25.32-q25.33 schwannomin interacting protein 1 protein-coding SCHIP1 schwannomin interacting protein 1 O schwannomin-interacting protein 1 20121230 -9606 29974 A1CF RP11-564C4.2 ACF|ACF64|ACF65|APOBEC1CF|ASP HGNC:24086|Ensembl:ENSG00000148584|HPRD:10627|Vega:OTTHUMG00000018240 10 10q11.23 APOBEC1 complementation factor protein-coding A1CF APOBEC1 complementation factor O APOBEC-1 stimulating protein|apo-B RNA editing protein|apobec-1 complementation factor (ACF) (ASP) 20121230 -9606 29978 UBQLN2 HRIHFB2157 ALS15|CHAP1|DSK2|N4BP4|PLIC2 HGNC:12509|MIM:300264|Ensembl:ENSG00000188021|HPRD:02224|Vega:OTTHUMG00000021669 X Xp11.21 ubiquilin 2 protein-coding UBQLN2 ubiquilin 2 O Nedd4 binding protein 4|protein linking IAP with cytoskeleton 2|ubiquilin-2|ubiquitin-like product Chap1/Dsk2 20121230 -9606 29979 UBQLN1 - DA41|DSK2|PLIC-1|UBQN|XDRP1 HGNC:12508|MIM:605046|Ensembl:ENSG00000135018|HPRD:05440|Vega:OTTHUMG00000020104 9 9q22|9q21.2-q21.3 ubiquilin 1 protein-coding UBQLN1 ubiquilin 1 O hPLIC-1|protein linking IAP with cytoskeleton 1|ubiquilin-1 20121230 -9606 29980 DONSON - B17|C21orf60|C2TA HGNC:2993|MIM:611428|Ensembl:ENSG00000159147|HPRD:09926|Vega:OTTHUMG00000065904 21 21q22.1 downstream neighbor of SON protein-coding DONSON downstream neighbor of SON O MHC class II transactivator type I|protein downstream neighbor of Son 20121230 -9606 29982 NRBF2 RP11-144G16.2 COPR1|COPR2|NRBF-2 HGNC:19692|Ensembl:ENSG00000148572|HPRD:11401|Vega:OTTHUMG00000018309 10 10q21.3 nuclear receptor binding factor 2 protein-coding NRBF2 nuclear receptor binding factor 2 O comodulator of PPAR and RXR 1|comodulator of PPAR and RXR 2|nuclear receptor binding factor-2|nuclear receptor-binding factor 2 20121230 -9606 29984 RHOD - ARHD|RHOHP1|RHOM|Rho HGNC:670|MIM:605781|Ensembl:ENSG00000173156|HPRD:05776|Vega:OTTHUMG00000167102 11 11q14.3 ras homolog family member D protein-coding RHOD ras homolog family member D O Rho-related protein HP1|ras homolog D|ras homolog gene family, member A|ras homolog gene family, member D|rho-related GTP-binding protein RhoD 20121230 -9606 29985 SLC39A3 - ZIP3 HGNC:17128|MIM:612168|Ensembl:ENSG00000141873|HPRD:15386|Vega:OTTHUMG00000180440 19 19p13.3 solute carrier family 39 (zinc transporter), member 3 protein-coding SLC39A3 solute carrier family 39 (zinc transporter), member 3 O ZIP-3|solute carrier family 39 member 3|zinc transporter ZIP3|zrt- and Irt-like protein 3 20121230 -9606 29986 SLC39A2 - 6A1|ETI-1|ZIP-2|ZIP2 HGNC:17127|MIM:612166|Ensembl:ENSG00000165794|HPRD:15385|Vega:OTTHUMG00000029616 14 14q11.2 solute carrier family 39 (zinc transporter), member 2 protein-coding SLC39A2 solute carrier family 39 (zinc transporter), member 2 O Zrt- and Irt-like protein 2|solute carrier family 39 member 2|zinc transporter ZIP2|zinc uptake transporter 2 20121230 -9606 29988 SLC2A8 RP11-356B19.7 GLUT8|GLUTX1 HGNC:13812|MIM:605245|Ensembl:ENSG00000136856|HPRD:05580|Vega:OTTHUMG00000020702 9 9q33.3 solute carrier family 2 (facilitated glucose transporter), member 8 protein-coding SLC2A8 solute carrier family 2 (facilitated glucose transporter), member 8 O glucose transporter type 8|glucose transporter type X1|solute carrier family 2, facilitated glucose transporter member 8 20121230 -9606 29989 OBP2B UNQ653/PRO1283 hOBPIIb HGNC:23381|MIM:604606|Ensembl:ENSG00000171102|HPRD:05209|Vega:OTTHUMG00000020860 9 9q34 odorant binding protein 2B protein-coding OBP2B odorant binding protein 2B O OBPIIb|odorant-binding protein 2b|odorant-binding protein IIb 20121230 -9606 29990 PILRB hCG_2024112 FDFACT1|FDFACT2 HGNC:18297|MIM:605342 7 7q22.1 paired immunoglobin-like type 2 receptor beta protein-coding PILRB paired immunoglobin-like type 2 receptor beta O activating receptor PILR-beta|activating receptor PILRbeta|cell surface receptor FDFACT|cell surface receptor FDFACT1|cell surface receptor FDFACT2|paired immunoglobin-like receptor beta|paired immunoglobulin-like receptor beta|paired immunoglobulin-like type 2 receptor beta 20121230 -9606 29991 OBP2A RP11-426A6.3 OBP|OBP2C|OBPIIa|hOBPIIa HGNC:23380|MIM:164320|Ensembl:ENSG00000122136|HPRD:01253|Vega:OTTHUMG00000020909 9 9q34 odorant binding protein 2A protein-coding OBP2A odorant binding protein 2A O odorant-binding protein 2a|odorant-binding protein IIa|putative odorant-binding protein 2c 20121230 -9606 29992 PILRA - FDF03 HGNC:20396|MIM:605341|Ensembl:ENSG00000085514|HPRD:05631|Vega:OTTHUMG00000155248 7 7q22.1 paired immunoglobin-like type 2 receptor alpha protein-coding PILRA paired immunoglobin-like type 2 receptor alpha O cell surface receptor FDF03|inhibitory receptor PILR-alpha|paired immunoglobulin-like type 2 receptor alpha 20121230 -9606 29993 PACSIN1 RP11-375E1__A.1 SDPI HGNC:8570|MIM:606512|Ensembl:ENSG00000124507|HPRD:05936|Vega:OTTHUMG00000014547 6 6p21.3 protein kinase C and casein kinase substrate in neurons 1 protein-coding PACSIN1 protein kinase C and casein kinase substrate in neurons 1 O protein kinase C and casein kinase substrate in neurons protein 1|syndapin I 20121230 -9606 29994 BAZ2B - WALp4 HGNC:963|MIM:605683|Ensembl:ENSG00000123636|HPRD:09295|Vega:OTTHUMG00000132027 2 2q24.2 bromodomain adjacent to zinc finger domain, 2B protein-coding BAZ2B bromodomain adjacent to zinc finger domain, 2B O bromodomain adjacent to zinc finger domain protein 2B|hWALp4 20121230 -9606 29995 LMCD1 - - HGNC:6633|MIM:604859|Ensembl:ENSG00000071282|HPRD:06891|Vega:OTTHUMG00000154971 3 3p26-p24 LIM and cysteine-rich domains 1 protein-coding LMCD1 LIM and cysteine-rich domains 1 O LIM and cysteine-rich domains protein 1|dyxin 20121230 -9606 29997 GLTSCR2 - PICT-1|PICT1 HGNC:4333|MIM:605691|Ensembl:ENSG00000105373|HPRD:16142 19 19q13.3 glioma tumor suppressor candidate region gene 2 protein-coding GLTSCR2 glioma tumor suppressor candidate region gene 2 O glioma tumor suppressor candidate region gene 2 protein|p60|protein interacting with carboxyl terminus 1 20121230 -9606 29998 GLTSCR1 - - HGNC:4332|MIM:605690|Ensembl:ENSG00000063169|HPRD:09296 19 19q13.3 glioma tumor suppressor candidate region gene 1 protein-coding GLTSCR1 glioma tumor suppressor candidate region gene 1 O glioma tumor suppressor candidate region gene 1 protein 20121230 -9606 29999 FSCN3 - - HGNC:3961|Ensembl:ENSG00000106328|HPRD:17020|Vega:OTTHUMG00000022935 7 7q31.3 fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) protein-coding FSCN3 fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) O fascin-3|testis fascin 20121230 -9606 30000 TNPO2 - IPO3|KPNB2B|TRN2 HGNC:19998|MIM:603002|Ensembl:ENSG00000105576|Vega:OTTHUMG00000180333 19 19p13.2 transportin 2 protein-coding TNPO2 transportin 2 O importin 3|karyopherin beta 2b, transportin|karyopherin beta-2b|transportin 2 (importin 3, karyopherin beta 2b)|transportin-2 20121230 -9606 30001 ERO1L UNQ434/PRO865 ERO1-alpha|ERO1A HGNC:13280|Ensembl:ENSG00000197930|HPRD:13278|Vega:OTTHUMG00000140301 14 14q22.1 ERO1-like (S. cerevisiae) protein-coding ERO1L ERO1-like (S. cerevisiae) O ERO1-L|ERO1-L-alpha|ERO1-like protein alpha|endoplasmic oxidoreductin-1-like protein|oxidoreductin-1-L-alpha 20121230 -9606 30008 EFEMP2 UNQ200/PRO226 ARCL1B|FBLN4|MBP1|UPH1 HGNC:3219|MIM:604633|Ensembl:ENSG00000172638|HPRD:05221|Vega:OTTHUMG00000166664 11 11q13.1 EGF containing fibulin-like extracellular matrix protein 2 protein-coding EFEMP2 EGF containing fibulin-like extracellular matrix protein 2 O EGF-containing fibulin-like extracellular matrix protein 2|FIBL-4|fibulin 4|fibulin-4|mutant p53 binding protein 1 20121230 -9606 30009 TBX21 - T-PET|T-bet|TBET|TBLYM HGNC:11599|MIM:604895|Ensembl:ENSG00000073861|HPRD:05355|Vega:OTTHUMG00000178287 17 17q21.32 T-box 21 protein-coding TBX21 T-box 21 O T-box expressed in T cells|T-box protein 21|T-box transcription factor TBX21|T-cell-specific T-box transcription factor T-bet|transcription factor TBLYM 20121230 -9606 30010 NXPH1 Nbla00697 NPH1 HGNC:20693|MIM:604639|Ensembl:ENSG00000122584|HPRD:06867|Vega:OTTHUMG00000151941 7 7p22 neurexophilin 1 protein-coding NXPH1 neurexophilin 1 O neurexophilin-1 20121230 -9606 30011 SH3KBP1 RP11-345L8.1 CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18 HGNC:13867|MIM:300374|Ensembl:ENSG00000147010|HPRD:02301|Vega:OTTHUMG00000021227 X Xp22.1-p21.3 SH3-domain kinase binding protein 1 protein-coding SH3KBP1 SH3-domain kinase binding protein 1 O CD2-binding protein 3|SH3 domain-containing kinase-binding protein 1|Src family kinase-binding protein 1|c-Cbl-interacting protein|cbl-interacting protein of 85 kDa|human Src family kinase-binding protein 1|migration-inducing gene 18|src-related kinase binding protein-1 20121230 -9606 30012 TLX3 - HOX11L2|RNX HGNC:13532|MIM:604640|Ensembl:ENSG00000164438|HPRD:06868|Vega:OTTHUMG00000163207 5 5q35.1 T-cell leukemia homeobox 3 protein-coding TLX3 T-cell leukemia homeobox 3 O T-cell leukemia homeobox protein 3|T-cell leukemia, homeobox 3|homeo box 11-like 2|homeobox protein Hox-11L2 20121230 -9606 30014 SPANXA1 - CT11.1|NAP-X|SPAN-Xa|SPAN-Xb|SPANX HGNC:11218|MIM:300305|Ensembl:ENSG00000198021|HPRD:02252|Vega:OTTHUMG00000022564 X Xq27.1 sperm protein associated with the nucleus, X-linked, family member A1 protein-coding SPANXA1 sperm protein associated with the nucleus, X-linked, family member A1 O SPAN-X|SPANX family member A|SPANX family, member A1|SPANX-A|cancer/testis antigen 11.1|cancer/testis antigen family 11, member 1|nuclear-associated protein SPAN-Xa|sperm protein associated with the nucleus on the X chromosome A|sperm protein associated with the nucleus, X chromosome, family member A1 20121230 -9606 30061 SLC40A1 MSTP079 FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3 HGNC:10909|MIM:604653|Ensembl:ENSG00000138449|HPRD:05229|Vega:OTTHUMG00000132662 2 2q32 solute carrier family 40 (iron-regulated transporter), member 1 protein-coding SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1 O iron regulated gene 1|putative ferroportin 1 variant IIIB|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 3|solute carrier family 40 member 1 20121230 -9606 30062 RAX - MCOP3|RX HGNC:18662|MIM:601881|Ensembl:ENSG00000134438|HPRD:03530|Vega:OTTHUMG00000132757 18 18q21.32 retina and anterior neural fold homeobox protein-coding RAX retina and anterior neural fold homeobox O retina and anterior neural fold homeobox protein|retinal homeobox protein Rx 20121230 -9606 30811 HUNK - - HGNC:13326|MIM:606532|Ensembl:ENSG00000142149|HPRD:09410|Vega:OTTHUMG00000085019 21 21q22.1 hormonally up-regulated Neu-associated kinase protein-coding HUNK hormonally up-regulated Neu-associated kinase O B19|hormonally up-regulated neu tumor-associated kinase|hormonally upregulated Neu-associated kinase|hormonally upregulated neu tumor-associated kinase|serine/threonine protein kinase MAK-V|serine/threonine-protein kinase MAK-V 20121230 -9606 30812 SOX8 - - HGNC:11203|MIM:605923|Ensembl:ENSG00000005513|HPRD:16175|Vega:OTTHUMG00000122101 16 16p13.3 SRY (sex determining region Y)-box 8 protein-coding SOX8 SRY (sex determining region Y)-box 8 O transcription factor SOX-8 20121230 -9606 30813 VSX1 RP5-1025A1.1 CAASDS|KTCN|KTCN1|PPCD|PPD|RINX HGNC:12723|MIM:605020|Ensembl:ENSG00000100987|HPRD:09232|Vega:OTTHUMG00000032111 20 20p11.21 visual system homeobox 1 protein-coding VSX1 visual system homeobox 1 O homeodomain protein RINX|retinal inner nuclear layer homeobox protein|transcription factor VSX1 20121230 -9606 30814 PLA2G2E - GIIE sPLA2|sPLA2-IIE HGNC:13414|Ensembl:ENSG00000188784|HPRD:07143|Vega:OTTHUMG00000002702 1 1p36.13 phospholipase A2, group IIE protein-coding PLA2G2E phospholipase A2, group IIE O group IIE secretory phospholipase A2|phosphatidylcholine 2-acylhydrolase 2E 20121230 -9606 30815 ST6GALNAC6 UNQ708/PRO1359 RP11-203J24.3|SIAT7F|ST6GALNACVI HGNC:23364|MIM:610135|Ensembl:ENSG00000160408|HPRD:18111|Vega:OTTHUMG00000020718 9 9q34.11 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein-coding ST6GALNAC6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 O CMP-NeuAC:(beta)-N-acetylgalactosaminide (alpha)2,6-sialyltransferase member VI|SIAT7-F|ST6GalNAc VI|alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6|galNAc alpha-2,6-sialyltransferase VI|hST6GalNAc VI|sialyltransferase 7F|sialytransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialytransferase) F 20121230 -9606 30816 ERVW-1 - ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV HGNC:13525|MIM:604659|Ensembl:ENSG00000242950|HPRD:05231|Vega:OTTHUMG00000131249 7 7q21.2 endogenous retrovirus group W, member 1 protein-coding ERVW-1 endogenous retrovirus group W, member 1 O HERV-7q envelope protein|HERV-W Env glycoprotein|HERV-W envelope protein|HERV-W_7q21.2 provirus ancestral Env polyprotein|HERV-W{7q21.1} provirus ancestral Env polyprotein|HERV-tryptophan envelope protein|endogenous retroviral family W, env(C7), member 1|endogenous retrovirus group W member 1|env-W|envelope glycoprotein|envelope polyprotein gPr73|envelope protein|enverin|human endogenous retrovirus W envC7-1 envelope protein|syncytin A|syncytin-1 20121230 -9606 30817 EMR2 - CD312 HGNC:3337|MIM:606100|Ensembl:ENSG00000127507|HPRD:07308 19 19p13.1 egf-like module containing, mucin-like, hormone receptor-like 2 protein-coding EMR2 egf-like module containing, mucin-like, hormone receptor-like 2 O EGF-like module-containing mucin-like hormone receptor-like 2 20121230 -9606 30818 KCNIP3 - CSEN|DREAM|KCHIP3 HGNC:15523|MIM:604662|Ensembl:ENSG00000115041|HPRD:05232|Vega:OTTHUMG00000130392 2 2q21.1 Kv channel interacting protein 3, calsenilin protein-coding KCNIP3 Kv channel interacting protein 3, calsenilin O A-type potassium channel modulatory protein 3|DRE-antagonist modulator|calsenilin|calsenilin, presenilin-binding protein, EF hand transcription factor|kv channel-interacting protein 3|potassium channel interacting protein 3 20121230 -9606 30819 KCNIP2 - KCHIP2 HGNC:15522|MIM:604661|Ensembl:ENSG00000120049|HPRD:06880|Vega:OTTHUMG00000018937 10 10q24 Kv channel interacting protein 2 protein-coding KCNIP2 Kv channel interacting protein 2 O A-type potassium channel modulatory protein 2|Kv channel-interacting protein 2|cardiac voltage-gated potassium channel modulatory subunit|potassium channel-interacting protein 2 20121230 -9606 30820 KCNIP1 - KCHIP1|VABP HGNC:15521|MIM:604660|Ensembl:ENSG00000182132|HPRD:06879|Vega:OTTHUMG00000130442 5 5q35.1 Kv channel interacting protein 1 protein-coding KCNIP1 Kv channel interacting protein 1 O A-type potassium channel modulatory protein 1|Kv channel-interacting protein 1|potassium channel interacting protein 1|potassium channel-interacting protein 1|vesicle APC-binding protein 20121230 -9606 30827 CXXC1 - 2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP HGNC:24343|MIM:609150|Ensembl:ENSG00000154832|HPRD:10852|Vega:OTTHUMG00000132670 18 18q12 CXXC finger protein 1 protein-coding CXXC1 CXXC finger protein 1 O CXXC finger 1 (PHD domain)|CXXC-type zinc finger protein 1|CpG binding protein|DNA-binding protein with PHD finger and CXXC domain|PHD finger and CXXC domain-containing protein 1|cpG-binding protein|zinc finger, CpG binding-type containing 1 20121230 -9606 30829 IBD3 - - HGNC:13863|MIM:604519 6 6p inflammatory bowel disease 3 unknown IBD3 inflammatory bowel disease 3 O - 20120622 -9606 30832 ZNF354C - KID3 HGNC:16736|Ensembl:ENSG00000177932|HPRD:15785|Vega:OTTHUMG00000130888 5 5q35 zinc finger protein 354C protein-coding ZNF354C zinc finger protein 354C O KRAB-zinc finger protein synten|kidney, ischemia, and developmentally-regulated protein 3 20121230 -9606 30833 NT5C - DNT|DNT1|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 HGNC:17144|MIM:191720|Ensembl:ENSG00000125458|HPRD:11833|Vega:OTTHUMG00000179346 17 17q25.1 5', 3'-nucleotidase, cytosolic protein-coding NT5C 5', 3'-nucleotidase, cytosolic O 5' nucleotidase, deoxy (pyrimidine), cytosolic type C|5'(3')-deoxyribonucleotidase, cytosolic type|cytosolic 5',3'-pyrimidine nucleotidase|deoxy-5'-nucleotidase 1|uridine 5'-monophosphate phosphohydrolase 2|uridine 5-prime monophosphate hydrolase 2 20121230 -9606 30834 ZNRD1 DAAP-65D20.6 HTEX-6|Rpa12|TEX6|hZR14|tctex-6 HGNC:13182|MIM:607525|Ensembl:ENSG00000066379|HPRD:09601|Vega:OTTHUMG00000031149 6 6p21.3 zinc ribbon domain containing 1 protein-coding ZNRD1 zinc ribbon domain containing 1 O DNA-directed RNA polymerase I subunit RPA12|RNA polymerase I small specific subunit Rpa12|transcription-associated zinc ribbon protein|zinc ribbon domain-containing protein 1 20121230 -9606 30835 CD209 - CDSIGN|CLEC4L|DC-SIGN|DC-SIGN1 HGNC:1641|MIM:604672|Ensembl:ENSG00000090659|HPRD:05241 19 19p13 CD209 molecule protein-coding CD209 CD209 molecule O C-type lectin domain family 4 member L|C-type lectin domain family 4, member L|CD209 antigen|HIV gpl20-binding protein|dendritic cell-specific ICAM-3-grabbing non-integrin 1|dendritic cell-specific intracellular adhesion molecules (ICAM)-3 grabbing non-integrin 20121230 -9606 30836 DNTTIP2 - ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 HGNC:24013|MIM:611199|Ensembl:ENSG00000067334|HPRD:09994|Vega:OTTHUMG00000010268 1 1p22.1 deoxynucleotidyltransferase, terminal, interacting protein 2 protein-coding DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2 O LPTS-interacting protein 2|acidic 82 kDa protein mRNA|deoxynucleotidyltransferase terminal-interacting protein 2|estrogen receptor binding protein|tdT-interacting factor 2 20121230 -9606 30837 SOCS7 - NAP4|NCKAP4 HGNC:29846|MIM:608788|Ensembl:ENSG00000174111|HPRD:12299|Vega:OTTHUMG00000178095 17 17q12 suppressor of cytokine signaling 7 protein-coding SOCS7 suppressor of cytokine signaling 7 O NAP-4|NCK-associated protein 4|Nck, Ash and phospholipase C binding protein|SOCS-7|nck, Ash and phospholipase C gamma-binding protein 20121230 -9606 30844 EHD4 FKSG7 PAST4 HGNC:3245|MIM:605892|Ensembl:ENSG00000103966|HPRD:10435|Vega:OTTHUMG00000130370 15 15q11.1 EH-domain containing 4 protein-coding EHD4 EH-domain containing 4 O EH domain containing 4|EH domain-containing protein 4|PAST homolog 4|hepatocellular carcinoma-associated protein 10/11|hepatocellular carcinoma-associated protein HCA11|ortholog of rat pincher 20121230 -9606 30845 EHD3 - PAST3 HGNC:3244|MIM:605891|Ensembl:ENSG00000013016|HPRD:16170|Vega:OTTHUMG00000099365 2 2p21 EH-domain containing 3 protein-coding EHD3 EH-domain containing 3 O EH domain containing 3|EH domain-containing protein 3|PAST homolog 3 20121230 -9606 30846 EHD2 - PAST2 HGNC:3243|MIM:605890|Ensembl:ENSG00000024422|HPRD:10434 19 19q13.3 EH-domain containing 2 protein-coding EHD2 EH-domain containing 2 O EH domain containing 2|EH domain-containing protein 2|PAST homolog 2 20121230 -9606 30847 CECR9 - - HGNC:1847 22 - cat eye syndrome chromosome region, candidate 9 (non-protein coding) unknown CECR9 cat eye syndrome chromosome region, candidate 9 (non-protein coding) O - 20121021 -9606 30848 CTAG2 - CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B HGNC:2492|MIM:300396|Ensembl:ENSG00000126890|HPRD:02318|Vega:OTTHUMG00000024239 X Xq28 cancer/testis antigen 2 protein-coding CTAG2 cancer/testis antigen 2 O CTL-recognized antigen on melanoma|LAGE-1a protein|autoimmunogenic cancer/testis antigen NY-ESO-2|cancer/testis antigen 6.2|cancer/testis antigen family 6, member 2a|cancer/testis antigen family 6, member 2b|l antigen family member 1 20121230 -9606 30849 PIK3R4 - VPS15|p150 HGNC:8982|MIM:602610|Ensembl:ENSG00000196455|HPRD:04010|Vega:OTTHUMG00000159645 3 3q22.1 phosphoinositide-3-kinase, regulatory subunit 4 protein-coding PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 O PI3-kinase p150 subunit|PI3-kinase regulatory subunit 4|phosphatidylinositol 3-kinase-associated p150|phosphoinositide 3-kinase adaptor protein|phosphoinositide 3-kinase regulatory subunit 4|phosphoinositide-3-kinase, regulatory subunit 4, p150 20121230 -9606 30850 CDR2L - HUMPPA HGNC:29999|Ensembl:ENSG00000109089|HPRD:11041|Vega:OTTHUMG00000150435 17 17q25.1 cerebellar degeneration-related protein 2-like protein-coding CDR2L cerebellar degeneration-related protein 2-like O paraneoplastic 62 kDa antigen|paraneoplastic antigen 20121230 -9606 30851 TAX1BP3 - TIP-1 HGNC:30684|Ensembl:ENSG00000213977|HPRD:18160|Vega:OTTHUMG00000090701 17 17p13 Tax1 (human T-cell leukemia virus type I) binding protein 3 protein-coding TAX1BP3 Tax1 (human T-cell leukemia virus type I) binding protein 3 O Tax interaction protein 1|glutaminase-interacting protein 3|tax-interacting protein 1|tax1-binding protein 3 20121230 -9606 30968 STOML2 HSPC108 SLP-2 HGNC:14559|MIM:608292|Ensembl:ENSG00000165283|HPRD:16310|Vega:OTTHUMG00000019851 9 9p13.1 stomatin (EPB72)-like 2 protein-coding STOML2 stomatin (EPB72)-like 2 O EPB72-like protein 2|stomatin-like 2|stomatin-like protein 2 20121230 -9606 43847 KLK14 - KLK-L6 HGNC:6362|MIM:606135|Ensembl:ENSG00000129437|HPRD:05844|Vega:OTTHUMG00000143721 19 19q13.3-q13.4 kallikrein-related peptidase 14 protein-coding KLK14 kallikrein-related peptidase 14 O hK14|kallikrein 14|kallikrein-14|kallikrein-like protein 6 20121230 -9606 43849 KLK12 UNQ669/PRO1303 KLK-L5|KLKL5 HGNC:6360|MIM:605539|Ensembl:ENSG00000186474|HPRD:05705|Vega:OTTHUMG00000165806 19 19q13.33 kallikrein-related peptidase 12 protein-coding KLK12 kallikrein-related peptidase 12 O kallikrein 12|kallikrein-12|kallikrein-like protein 5 20121230 -9606 49854 ZNF295 - ZBTB21 HGNC:13083|Ensembl:ENSG00000173276|HPRD:10328|Vega:OTTHUMG00000086789 21 21q22.3 zinc finger protein 295 protein-coding ZNF295 zinc finger protein 295 O zinc finger and BTB domain-containing protein 21 20121230 -9606 49855 SCAPER MSTP063 ZNF291|Zfp291 HGNC:13081|MIM:611611|Ensembl:ENSG00000140386|HPRD:11704|Vega:OTTHUMG00000172655 15 15q24 S-phase cyclin A-associated protein in the ER protein-coding SCAPER S-phase cyclin A-associated protein in the ER O S phase cyclin A-associated protein in the ER|S phase cyclin A-associated protein in the endoplasmic reticulum|zinc finger protein 291 20121230 -9606 49856 WRAP73 RP11-46F15.4 WDR8 HGNC:12759|MIM:606040|Ensembl:ENSG00000116213|HPRD:06918|Vega:OTTHUMG00000000612 1 1p36.3 WD repeat containing, antisense to TP73 protein-coding WRAP73 WD repeat containing, antisense to TP73 O WD repeat domain 8|WD repeat-containing protein WRAP73|WD repeat-containing protein antisense to TP73 20121230 -9606 49860 CRNN - C1orf10|DRC1|PDRC1|SEP53 HGNC:1230|MIM:611312|Ensembl:ENSG00000143536|HPRD:12720|Vega:OTTHUMG00000012383 1 1q21 cornulin protein-coding CRNN cornulin O 53 kDa putative calcium-binding protein|53 kDa squamous epithelial-induced stress protein|58 kDa heat shock protein|squamous epithelial heat shock protein 53|tumor-related protein 20121230 -9606 49861 CLDN20 - - HGNC:2042|Ensembl:ENSG00000171217|HPRD:13067|Vega:OTTHUMG00000015882 6 6q25 claudin 20 protein-coding CLDN20 claudin 20 O claudin-20 20121230 -9606 50484 RRM2B - MTDPS8A|MTDPS8B|P53R2 HGNC:17296|MIM:604712|Ensembl:ENSG00000048392|HPRD:05276|Vega:OTTHUMG00000164776 8 8q23.1 ribonucleotide reductase M2 B (TP53 inducible) protein-coding RRM2B ribonucleotide reductase M2 B (TP53 inducible) O TP53-inducible ribonucleotide reductase M2 B|p53-inducible ribonucleotide reductase small subunit 2 homolog|p53-inducible ribonucleotide reductase small subunit 2 short form beta|p53-inducible ribonucleotide reductase small subunit 2-like protein|ribonucleoside-diphosphate reductase subunit M2 B 20121230 -9606 50485 SMARCAL1 - HARP|HHARP HGNC:11102|MIM:606622|Ensembl:ENSG00000138375|HPRD:05969|Vega:OTTHUMG00000133055 2 2q35 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 protein-coding SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 O ATP-driven annealing helicase|HepA-related protein|SMARCA-like protein 1|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1|sucrose nonfermenting protein 2-like 1 20121230 -9606 50486 G0S2 - RP1-28O10.2 HGNC:30229|MIM:614447|Ensembl:ENSG00000123689|HPRD:09968|Vega:OTTHUMG00000036479 1 1q32.2 G0/G1switch 2 protein-coding G0S2 G0/G1switch 2 O G0/G1 switch protein 2|G0/G1 switch regulatory protein 2 20121230 -9606 50487 PLA2G3 - GIII-SPLA2|SPLA2III HGNC:17934|MIM:611651|Ensembl:ENSG00000100078|HPRD:07144|Vega:OTTHUMG00000151255 22 22q12.2 phospholipase A2, group III protein-coding PLA2G3 phospholipase A2, group III O GIII sPLA2|group 3 secretory phospholipase A2|group III secreted phospholipase A2|group III secretory phospholipase A2|phosphatidylcholine 2-acylhydrolase 3|phosphatidylcholine 2-acylhydrolase GIII|sPLA2-III 20121230 -9606 50488 MINK1 - B55|MAP4K6|MINK|YSK2|ZC3|hMINK|hMINKbeta HGNC:17565|MIM:609426|Ensembl:ENSG00000141503|HPRD:11366|Vega:OTTHUMG00000177932 17 17p13.2 misshapen-like kinase 1 protein-coding MINK1 misshapen-like kinase 1 O GCK family kinase MINK|MAPK/ERK kinase kinase kinase 6|MEK kinase kinase 6|MEKKK 6|misshapen/NIK-related kinase|mitogen-activated protein kinase kinase kinase kinase 6|serine/threonine protein kinase 20121230 -9606 50489 CD207 - CLEC4K HGNC:17935|MIM:604862|Ensembl:ENSG00000116031|HPRD:07278|Vega:OTTHUMG00000153176 2 2p13 CD207 molecule, langerin protein-coding CD207 CD207 molecule, langerin O C-type lectin domain family 4 member K|C-type lectin domain family 4, member K|CD207 antigen, langerin|Langerhans cell specific c-type lectin 20121230 -9606 50506 DUOX2 - LNOX2|NOXEF2|P138-TOX|TDH6|THOX2 HGNC:13273|MIM:606759|Ensembl:ENSG00000140279|HPRD:05997|Vega:OTTHUMG00000131355 15 15q15.3 dual oxidase 2 protein-coding DUOX2 dual oxidase 2 O NADH/NADPH thyroid oxidase p138-tox|NADPH oxidase/peroxidase DUOX2|NADPH thyroid oxidase 2|dual oxidase-like domains 2|flavoprotein NADPH oxidase|large NOX 2|long NOX 2|nicotinamide adenine dinucleotide phosphate oxidase|p138 thyroid oxidase|thyroid oxidase 2 20121230 -9606 50507 NOX4 - KOX|KOX-1|RENOX HGNC:7891|MIM:605261|Ensembl:ENSG00000086991|HPRD:09243|Vega:OTTHUMG00000167298 11 11q14.2-q21 NADPH oxidase 4 protein-coding NOX4 NADPH oxidase 4 O kidney oxidase-1|kidney superoxide-producing NADPH oxidase|renal NAD(P)H-oxidase 20121230 -9606 50508 NOX3 - GP91-3|MOX-2 HGNC:7890|MIM:607105|Ensembl:ENSG00000074771|HPRD:06165|Vega:OTTHUMG00000015883 6 6q25.3 NADPH oxidase 3 protein-coding NOX3 NADPH oxidase 3 O NADPH oxidase catalytic subunit-like 3|gp91phox homolog 3|mitogenic oxidase 2 20121230 -9606 50509 COL5A3 - - HGNC:14864|MIM:120216|Ensembl:ENSG00000080573|HPRD:00369|Vega:OTTHUMG00000150019 19 19p13.2 collagen, type V, alpha 3 protein-coding COL5A3 collagen, type V, alpha 3 O collagen alpha-3(V) chain|pro-(alpha)3(V) collagen 20121230 -9606 50511 SYCP3 - COR1|SCP3|SPGF4 HGNC:18130|MIM:604759|Ensembl:ENSG00000139351|HPRD:07265|Vega:OTTHUMG00000150132 12 12q synaptonemal complex protein 3 protein-coding SYCP3 synaptonemal complex protein 3 O - 20121230 -9606 50512 PODXL2 UNQ1861/PRO3742 EG|PODLX2 HGNC:17936|Ensembl:ENSG00000114631|HPRD:15154|Vega:OTTHUMG00000159642 3 3q21.3 podocalyxin-like 2 protein-coding PODXL2 podocalyxin-like 2 O endoglycan|podocalyxin-like protein 2 20121230 -9606 50514 DEC1 - CTS9 HGNC:23658|MIM:604767|Ensembl:ENSG00000173077|HPRD:16068|Vega:OTTHUMG00000020549 9 9q32 deleted in esophageal cancer 1 protein-coding DEC1 deleted in esophageal cancer 1 O candidate tumor suppressor CTS9 20121230 -9606 50515 CHST11 - C4ST|C4ST-1|C4ST1|HSA269537 HGNC:17422|MIM:610128|Ensembl:ENSG00000171310|HPRD:13055|Vega:OTTHUMG00000169803 12 12q carbohydrate (chondroitin 4) sulfotransferase 11 protein-coding CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 O C4S-1|IgH/CHST11 fusion|carbohydrate sulfotransferase 11|chondroitin 4-O-sulfotransferase 1 20121230 -9606 50516 PPP1R14BP1 - PLCB3NP HGNC:9058 22 22q12 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 1 pseudo PPP1R14BP1 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 1 O - 20121230 -9606 50604 IL20 UNQ852/PRO1801 IL-20|IL10D|ZCYTO10 HGNC:6002|MIM:605619|Ensembl:ENSG00000162891|HPRD:05728|Vega:OTTHUMG00000036456 1 1q32 interleukin 20 protein-coding IL20 interleukin 20 O cytokine Zcyto10|four alpha helix cytokine|interleukin-20 20121230 -9606 50608 IBD4 - - HGNC:5333|MIM:606675 14 14q11-q12 inflammatory bowel disease 4 unknown IBD4 inflammatory bowel disease 4 O - 20120622 -9606 50612 CXCL1P - GRO1P|GROP|MGSAP|SCYB1P HGNC:10641 4 4q13.3 chemokine (C-X-C motif) ligand 1 pseudogene pseudo CXCL1P chemokine (C-X-C motif) ligand 1 pseudogene O - 20121230 -9606 50613 UBQLN3 - TUP-1 HGNC:12510|MIM:605473|Ensembl:ENSG00000175520|HPRD:05684|Vega:OTTHUMG00000066886 11 11p15 ubiquilin 3 protein-coding UBQLN3 ubiquilin 3 O ubiquilin-3 20121230 -9606 50614 GALNT9 - GALNAC-T9 HGNC:4131|MIM:606251|Ensembl:ENSG00000182870|Vega:OTTHUMG00000168256 12 12q24.33 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) protein-coding GALNT9 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) O GalNAc transferase 9|UDP-GalNAc: polypeptide N-acetylgalactosaminyltransferase 9|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9|polypeptide GalNAc transferase 9|polypeptide N-acetylgalactosaminyltransferase 9|pp-GaNTase 9|protein-UDP acetylgalactosaminyltransferase 9 20121230 -9606 50615 IL21R UNQ3121/PRO10273 CD360|NILR HGNC:6006|MIM:605383|Ensembl:ENSG00000103522|HPRD:05649|Vega:OTTHUMG00000131675 16 16p11 interleukin 21 receptor protein-coding IL21R interleukin 21 receptor O IL-21 receptor|IL-21R|interleukin-21 receptor|novel interleukin receptor 20121230 -9606 50616 IL22 UNQ3099/PRO10096 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 HGNC:14900|MIM:605330|Ensembl:ENSG00000127318|HPRD:05621|Vega:OTTHUMG00000169119 12 12q15 interleukin 22 protein-coding IL22 interleukin 22 O IL-10-related T-cell-derived inducible factor|IL-10-related T-cell-derived-inducible factor|cytokine Zcyto18|interleukin-22 20121230 -9606 50617 ATP6V0A4 tcag7.346 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 HGNC:866|MIM:605239|Ensembl:ENSG00000105929|HPRD:05576|Vega:OTTHUMG00000157122 7 7q34 ATPase, H+ transporting, lysosomal V0 subunit a4 protein-coding ATP6V0A4 ATPase, H+ transporting, lysosomal V0 subunit a4 O ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1B|ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 2 (38kD)|H(+)-transporting two-sector ATPase, noncatalytic accessory protein 1B|V-ATPase 116 kDa|V-type proton ATPase 116 kDa subunit a|V-type proton ATPase 116 kDa subunit a isoform 4|vacuolar proton pump 116 kDa accessory subunit|vacuolar proton pump, subunit 2|vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform 20121230 -9606 50618 ITSN2 - PRO2015|SH3D1B|SH3P18|SWA|SWAP HGNC:6184|MIM:604464|Ensembl:ENSG00000198399|HPRD:09193|Vega:OTTHUMG00000090818 2 2pter-p25.1 intersectin 2 protein-coding ITSN2 intersectin 2 O SH3 domain-containing protein 1B|SH3P18-like WASP-associated protein|intersectin-2 20121230 -9606 50619 DEF6 RP3-329A5.5 IBP|SLAT|SWAP70L HGNC:2760|MIM:610094|Ensembl:ENSG00000023892|HPRD:10869|Vega:OTTHUMG00000014563 6 6p21.33-p21.1 differentially expressed in FDCP 6 homolog (mouse) protein-coding DEF6 differentially expressed in FDCP 6 homolog (mouse) O DEF-6|IRF4-binding protein|SWAP-70-like adaptor protein of T cells|differentially expressed in FDCP 6 homolog 20121230 -9606 50624 CUZD1 UNQ224/PRO257 ERG-1|UO-44 HGNC:17937|Ensembl:ENSG00000138161|HPRD:06476|Vega:OTTHUMG00000019195 10 10q26.13 CUB and zona pellucida-like domains 1 protein-coding CUZD1 CUB and zona pellucida-like domains 1 O CUB and ZP domain-containing protein 1|CUB and zona pellucida-like domain-containing protein 1|estrogen regulated gene 1|transmembrane protein UO-44 20121230 -9606 50626 CYHR1 - CHRP HGNC:17806|Ensembl:ENSG00000187954|HPRD:13107|Vega:OTTHUMG00000165171 8 8q24.3 cysteine/histidine-rich 1 protein-coding CYHR1 cysteine/histidine-rich 1 O cysteine and histidine rich 1|cysteine and histidine rich protein|cysteine and histidine-rich protein 1 20121230 -9606 50628 GEMIN4 - HC56|HCAP1|HHRF-1|p97 HGNC:15717|MIM:606969|Ensembl:ENSG00000179409|HPRD:07370|Vega:OTTHUMG00000177495 17 17p13 gem (nuclear organelle) associated protein 4 protein-coding GEMIN4 gem (nuclear organelle) associated protein 4 O HCC-associated protein 1|component of gems 4|gem-associated protein 4|gemin-4 20121230 -9606 50631 YBX1P1 - NSEP1P|PSDBPB1 HGNC:8015 14 14q23.3 Y box binding protein 1 pseudogene 1 pseudo YBX1P1 Y box binding protein 1 pseudogene 1 O - 20121230 -9606 50632 CALY RP11-122K13.5 DRD1IP|NSG3 HGNC:17938|MIM:604647|Ensembl:ENSG00000130643|HPRD:06871|Vega:OTTHUMG00000019310 10 10q26.3 calcyon neuron-specific vesicular protein protein-coding CALY calcyon neuron-specific vesicular protein O D1 dopamine receptor-interacting protein|calcyon D1 dopamine receptor-interacting protein (CALCYON)|calcyon protein|dopamine receptor D1 interacting protein|neuron-specific vesicular protein calcyon 20121230 -9606 50636 ANO7 - D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G HGNC:31677|MIM:605096|Ensembl:ENSG00000146205|HPRD:16090|Vega:OTTHUMG00000151702 2 2q37.3 anoctamin 7 protein-coding ANO7 anoctamin 7 O Dresden-transmembrane protein of the prostate|anoctamin-7|prostate cancer associated protein 5|transmembrane protein 16G 20121230 -9606 50639 MBL3P - COLEC2|MBL HGNC:2221 10 10q22.3 mannose-binding lectin family member 3, pseudogene pseudo MBL3P mannose-binding lectin family member 3, pseudogene O - 20121230 -9606 50640 PNPLA8 BM-043 IPLA2(GAMMA)|IPLA2-2|IPLA2G|iPLA2gamma HGNC:28900|MIM:612123|Ensembl:ENSG00000135241|HPRD:13741|Vega:OTTHUMG00000154870 7 7q31 patatin-like phospholipase domain containing 8 protein-coding PNPLA8 patatin-like phospholipase domain containing 8 O PNPLA-gamma|calcium-independent phospholipase A2-gamma|iPLA2 gamma|iPLA2-gamma|intracellular membrane-associated calcium-independent phospholipase A2 gamma|membrane-associated calcium-independent phospholipase A2 gamma|patatin-like phospholipase domain-containing protein 8 20121230 -9606 50644 MRXS11 - SMRXS HGNC:13865|MIM:300238 X Xq26-q27 mental retardation, X-linked, syndromic 11 unknown MRXS11 mental retardation, X-linked, syndromic 11 O - 20120622 -9606 50648 IGHD@ - IGD1|IGHDY1 HGNC:5481|MIM:146910 14 14q32.33 immunoglobulin heavy diversity cluster other IGHD@ immunoglobulin heavy diversity cluster O - 20120208 -9606 50649 ARHGEF4 - ASEF|ASEF1|GEF4|STM6 HGNC:684|MIM:605216|Ensembl:ENSG00000136002|HPRD:05559|Vega:OTTHUMG00000131657 2 2q22 Rho guanine nucleotide exchange factor (GEF) 4 protein-coding ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4 O APC-stimulated guanine nucleotide exchange factor 1|rho guanine nucleotide exchange factor 4 20121230 -9606 50650 ARHGEF3 - GEF3|STA3|XPLN HGNC:683|MIM:612115|Ensembl:ENSG00000163947|HPRD:12480|Vega:OTTHUMG00000158857 3 3p14.3 Rho guanine nucleotide exchange factor (GEF) 3 protein-coding ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 O 59.8 kDA protein|RhoGEF protein|exchange factor found in platelets and leukemic and neuronal tissues, XPLN|rho guanine nucleotide exchange factor 3 20121230 -9606 50651 SLC45A1 - DNB5 HGNC:17939|MIM:605763|Ensembl:ENSG00000162426|Vega:OTTHUMG00000000503 1 1p36.23 solute carrier family 45, member 1 protein-coding SLC45A1 solute carrier family 45, member 1 O DNb-5|PAST-A|deleted in neuroblastoma 5 protein|proton-associated sugar transporter A 20121230 -9606 50652 PCA3 - DD3|NCRNA00019 HGNC:8637|MIM:604845 9 9q21-q22 prostate cancer antigen 3 (non-protein coding) miscRNA PCA3 prostate cancer antigen 3 (non-protein coding) O - 20121230 -9606 50674 NEUROG3 - Atoh5|Math4B|NGN-3|bHLHa7|ngn3 HGNC:13806|MIM:604882|Ensembl:ENSG00000122859|HPRD:05346|Vega:OTTHUMG00000018391 10 10q21.3 neurogenin 3 protein-coding NEUROG3 neurogenin 3 O class A basic helix-loop-helix protein 7|neurogenin-3|protein atonal homolog 5 20121230 -9606 50700 RDH8 - PRRDH|SDR28C2 HGNC:14423|MIM:608575|Ensembl:ENSG00000080511|HPRD:16350|Vega:OTTHUMG00000180392 19 19p13.2 retinol dehydrogenase 8 (all-trans) protein-coding RDH8 retinol dehydrogenase 8 (all-trans) O photoreceptor outer segment all-trans retinol dehydrogenase|retinol dehydrogenase 8|short chain dehydrogenase/reductase family 28C, member 2 20121230 -9606 50715 EJM2 - EIG7|JME HGNC:3306|MIM:604827 15 15q14 epilepsy, juvenile myoclonic 2 unknown EJM2 epilepsy, juvenile myoclonic 2 O - 20120622 -9606 50717 DCAF8 RP11-574F21.1 H326|WDR42A HGNC:24891|Ensembl:ENSG00000132716|Ensembl:ENSG00000258465|HPRD:18300|Vega:OTTHUMG00000031604|Vega:OTTHUMG00000171815 1 1q22-q23 DDB1 and CUL4 associated factor 8 protein-coding DCAF8 DDB1 and CUL4 associated factor 8 O DDB1- and CUL4-associated factor 8|WD repeat domain 42A|WD repeat-containing protein 42A 20121230 -9606 50801 KCNK4 - K2p4.1|TRAAK|TRAAK1 HGNC:6279|MIM:605720|Ensembl:ENSG00000182450|HPRD:12037|Vega:OTTHUMG00000168006 11 11q13 potassium channel, subfamily K, member 4 protein-coding KCNK4 potassium channel, subfamily K, member 4 O K2P4.1 potassium channel|TWIK-related arachidonic acid-stimulated potassium channel protein|potassium channel subfamily K member 4|two pore K(+) channel KT4.1|two pore K+ channel KT4.1|two pore potassium channel KT4.1 20121230 -9606 50802 IGK@ - IGK HGNC:5715 2 2p12 immunoglobulin kappa locus protein-coding IGK@ immunoglobulin kappa locus O - 20121230 -9606 50804 MYEF2 - HsT18564|MEF-2|MST156|MSTP156 HGNC:17940|Ensembl:ENSG00000104177|HPRD:14794|Vega:OTTHUMG00000172120 15 15q21.1 myelin expression factor 2 protein-coding MYEF2 myelin expression factor 2 O myEF-2|myelin gene expression factor 2 20121230 -9606 50805 IRX4 - IRXA3 HGNC:6129|MIM:606199|Ensembl:ENSG00000113430|HPRD:09369|Vega:OTTHUMG00000090411 5 5p15.3 iroquois homeobox 4 protein-coding IRX4 iroquois homeobox 4 O homeodomain protein IRXA3|iroquois homeobox protein 4|iroquois-class homeodomain protein IRX-4|iroquois-class homeodomain protein IRX-4 variant 1|iroquois-class homeodomain protein IRX-4 variant 2|iroquois-class homeodomain protein IRX-4 variant 3|iroquois-class homeodomain protein IRX-4 variant 4 20121230 -9606 50807 ASAP1 - AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P HGNC:2720|MIM:605953|Ensembl:ENSG00000153317|HPRD:05809|Vega:OTTHUMG00000164772 8 8q24.1-q24.2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 O 130 kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein|130 kDa phosphatidylinositol 4,5-bisphosphate-dependent ARF1 GTPase-activating protein|ADP-ribosylation factor-directed GTPase-activating protein 1|ARF GTPase-activating protein 1|DEF-1|PIP2-dependent ARF1 GAP|arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1|centaurin, beta 4|development and differentiation-enhancing factor 1 20121230 -9606 50808 AK3 RP11-6J24.4 AK3L1|AK6|AKL3L|AKL3L1|FIX HGNC:17376|MIM:609290|Ensembl:ENSG00000147853|HPRD:12439|Vega:OTTHUMG00000019472 9 9p24.1 adenylate kinase 3 protein-coding AK3 adenylate kinase 3 O GTP:AMP phosphotransferase, mitochondrial|adenylate kinase 3 alpha-like 1|adenylate kinase 6, adenylate kinase 3 like 1 20121230 -9606 50809 HP1BP3 RP5-930J4.3 HP1-BP74 HGNC:24973|Ensembl:ENSG00000127483|HPRD:11026|Vega:OTTHUMG00000002622 1 1p36.12 heterochromatin protein 1, binding protein 3 protein-coding HP1BP3 heterochromatin protein 1, binding protein 3 O HP1-BP74|heterochromatin protein 1-binding protein 3 20121230 -9606 50810 HDGFRP3 CGI-142 HDGF-2|HDGF2|HRP-3 Ensembl:ENSG00000166503|HPRD:17096|Vega:OTTHUMG00000172685 15 15q25.2 hepatoma-derived growth factor, related protein 3 protein-coding - - - hepatoma-derived growth factor 2|hepatoma-derived growth factor-related protein 3 20121230 -9606 50813 COPS7A - CSN7A HGNC:16758|Ensembl:ENSG00000111652|HPRD:16736|Vega:OTTHUMG00000169182 12 12p13.31 COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) protein-coding COPS7A COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) O COP9 complex subunit 7a|COP9 signalosome complex subunit 7a|JAB1-containing signalosome subunit 7a|SGN7a|dermal papilla-derived protein 10|signalosome subunit 7a 20121230 -9606 50814 NSDHL - H105E3|SDR31E1|XAP104 HGNC:13398|MIM:300275|Ensembl:ENSG00000147383|HPRD:02229|Vega:OTTHUMG00000024185 X Xq28 NAD(P) dependent steroid dehydrogenase-like protein-coding NSDHL NAD(P) dependent steroid dehydrogenase-like O protein H105e3|short chain dehydrogenase/reductase family 31E, member 1|sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating 20121230 -9606 50818 DYT10 - EKD1|PKC HGNC:37199|MIM:128200 16 16p11.2-q12.1 dystonia 10 unknown DYT10 dystonia 10 O - 20121209 -9606 50823 HMU - MUHH MIM:146550 - - Hypotrichosis, Marie Unna type unknown - - - - 20121018 -9606 50829 HDPA - - MIM:300221 X Xpter-p22.32 Hodgkin disease, susceptibility, pseudoautosomal unknown - - - - 20120622 -9606 50830 TGCT1 - - HGNC:13466|MIM:300228 X Xq27 testicular germ cell tumor susceptibility 1 unknown TGCT1 testicular germ cell tumor susceptibility 1 O - 20120622 -9606 50831 TAS2R3 - T2R3 HGNC:14910|MIM:604868|Ensembl:ENSG00000127362|HPRD:05335|Vega:OTTHUMG00000157637 7 7q31.3-q32 taste receptor, type 2, member 3 protein-coding TAS2R3 taste receptor, type 2, member 3 O candidate taste receptor T2R3|taste receptor type 2 member 3 20121230 -9606 50832 TAS2R4 - T2R4 HGNC:14911|MIM:604869|Ensembl:ENSG00000127364|HPRD:05336|Vega:OTTHUMG00000157634 7 7q31.3-q32 taste receptor, type 2, member 4 protein-coding TAS2R4 taste receptor, type 2, member 4 O candidate taste receptor T2R4|taste receptor type 2 member 4 20121230 -9606 50833 TAS2R16 - T2R16 HGNC:14921|MIM:604867|Ensembl:ENSG00000128519|HPRD:05334|Vega:OTTHUMG00000157090 7 7q31.1-q31.3|7q31 taste receptor, type 2, member 16 protein-coding TAS2R16 taste receptor, type 2, member 16 O candidate taste receptor T2R16|taste receptor type 2 member 16 20121230 -9606 50834 TAS2R1 - T2R1|TRB7 HGNC:14909|MIM:604796|Ensembl:ENSG00000169777|HPRD:07267|Vega:OTTHUMG00000090500 5 5p15 taste receptor, type 2, member 1 protein-coding TAS2R1 taste receptor, type 2, member 1 O taste receptor family B member 7|taste receptor type 2 member 1|taste receptor, family B, member 7 20121230 -9606 50835 TAS2R9 - T2R9|TRB6 HGNC:14917|MIM:604795|Ensembl:ENSG00000121381|HPRD:07266|Vega:OTTHUMG00000168507 12 12p13 taste receptor, type 2, member 9 protein-coding TAS2R9 taste receptor, type 2, member 9 O taste receptor family B member 6|taste receptor type 2 member 9|taste receptor, family B, member 6 20121230 -9606 50836 TAS2R8 - T2R8|TRB5 HGNC:14915|MIM:604794|Ensembl:ENSG00000121314|HPRD:16072|Vega:OTTHUMG00000168506 12 12p13 taste receptor, type 2, member 8 protein-coding TAS2R8 taste receptor, type 2, member 8 O taste receptor family B member 5|taste receptor type 2 member 8|taste receptor, family B, member 5 20121230 -9606 50837 TAS2R7 - T2R7|TRB4 HGNC:14913|MIM:604793|Ensembl:ENSG00000121377|HPRD:16071|Vega:OTTHUMG00000168505 12 12p13 taste receptor, type 2, member 7 protein-coding TAS2R7 taste receptor, type 2, member 7 O taste receptor family B member 4|taste receptor type 2 member 7|taste receptor, family B, member 4 20121230 -9606 50838 TAS2R13 - T2R13|TRB3 HGNC:14919|MIM:604792|Ensembl:ENSG00000212128|HPRD:11991|Vega:OTTHUMG00000168555 12 12p13 taste receptor, type 2, member 13 protein-coding TAS2R13 taste receptor, type 2, member 13 O taste receptor family B member 3|taste receptor type 2 member 13|taste receptor, family B, member 3 20121230 -9606 50839 TAS2R10 - T2R10|TRB2 HGNC:14918|MIM:604791|Ensembl:ENSG00000121318|HPRD:11990|Vega:OTTHUMG00000168508 12 12p13 taste receptor, type 2, member 10 protein-coding TAS2R10 taste receptor, type 2, member 10 O taste receptor family B member 2|taste receptor type 2 member 10|taste receptor, family B, member 2 20121230 -9606 50840 TAS2R14 - T2R14|TRB1 HGNC:14920|MIM:604790|Ensembl:ENSG00000212127|HPRD:11989|Vega:OTTHUMG00000162720 12 12p13 taste receptor, type 2, member 14 protein-coding TAS2R14 taste receptor, type 2, member 14 O taste receptor family B member 1|taste receptor type 2 member 14|taste receptor, family B, member 1 20121230 -9606 50846 DHH - GDXYM|HHG-3|SRXY7 HGNC:2865|MIM:605423|Ensembl:ENSG00000139549|HPRD:05664|Vega:OTTHUMG00000170408 12 12q13.1 desert hedgehog protein-coding DHH desert hedgehog O desert hedgehog homolog|desert hedgehog protein|mutant desert hedgehog 20121230 -9606 50848 F11R RP11-544M22.2 CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 HGNC:14685|MIM:605721|Ensembl:ENSG00000158769|HPRD:12038|Vega:OTTHUMG00000028602 1 1q21.2-q21.3 F11 receptor protein-coding F11R F11 receptor O junctional adhesion molecule 1|junctional adhesion molecule A|platelet F11 receptor|platelet adhesion molecule 1 20121230 -9606 50852 TRAT1 HSPC062 TCRIM|TRIM HGNC:30698|MIM:604962|Ensembl:ENSG00000163519|HPRD:05392|Vega:OTTHUMG00000159198 3 3q13 T cell receptor associated transmembrane adaptor 1 protein-coding TRAT1 T cell receptor associated transmembrane adaptor 1 O T cell receptor interacting molecule|T-cell receptor interacting molecule|T-cell receptor-associated transmembrane adapter 1|T-cell receptor-interacting molecule|pp29/30 20121230 -9606 50853 VILL - - HGNC:30906|Ensembl:ENSG00000136059|HPRD:18283|Vega:OTTHUMG00000130814 3 3p21.3 villin-like protein-coding VILL villin-like O villin-like protein 20121230 -9606 50854 C6orf48 DAAP-21F2.5 D6S57|G8 HGNC:19078|MIM:605447|Ensembl:ENSG00000204387|HPRD:12015|Vega:OTTHUMG00000031175 6 6p21.3 chromosome 6 open reading frame 48 protein-coding C6orf48 chromosome 6 open reading frame 48 O protein G8 20121230 -9606 50855 PARD6A - PAR-6A|PAR6|PAR6C|PAR6alpha|TAX40|TIP-40 HGNC:15943|MIM:607484|Ensembl:ENSG00000102981|HPRD:06316|Vega:OTTHUMG00000137534 16 16q22.1 par-6 partitioning defective 6 homolog alpha (C. elegans) protein-coding PARD6A par-6 partitioning defective 6 homolog alpha (C. elegans) O PAR-6 alpha|Tax-interacting protein 40|partitioning defective 6 homolog alpha|partitioning defective-6 homolog alpha|partitioning-defective protein 6|tax interaction protein 40 20121230 -9606 50856 CLEC4A HDCGC13P CLECSF6|DCIR|DDB27|LLIR HGNC:13257|MIM:605306|Ensembl:ENSG00000111729|HPRD:05604|Vega:OTTHUMG00000168571 12 12p13 C-type lectin domain family 4, member A protein-coding CLEC4A C-type lectin domain family 4, member A O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6|C-type lectin DDB27|C-type lectin domain family 4 member A|C-type lectin superfamily member 6|dendritic cell immunoreceptor|lectin-like immunoreceptor 20121230 -9606 50858 TTTY1 - LINC00033|NCRNA00033|TTY1 HGNC:14022 Y Yp11.2 testis-specific transcript, Y-linked 1 (non-protein coding) miscRNA TTTY1 testis-specific transcript, Y-linked 1 (non-protein coding) O - 20121209 -9606 50859 SPOCK3 UNQ409/PRO771 HSAJ1454|TES-3|TICN3 HGNC:13565|MIM:607989|Ensembl:ENSG00000196104|HPRD:12147|Vega:OTTHUMG00000161190 4 4q32.3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 protein-coding SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 O testican-3 20121230 -9606 50861 STMN3 - SCLIP HGNC:15926|MIM:608362|Ensembl:ENSG00000197457|HPRD:16324|Vega:OTTHUMG00000032985 20 20q13.3 stathmin-like 3 protein-coding STMN3 stathmin-like 3 O SCG10-like protein|SCG10-like-protein|stathmin-3 20121230 -9606 50862 RNF141 - ZFP26|ZNF230 HGNC:21159|Ensembl:ENSG00000110315|HPRD:11509|Vega:OTTHUMG00000165712 11 11p15.4 ring finger protein 141 protein-coding RNF141 ring finger protein 141 O C3HC4-like zinc finger protein|RING finger protein 141|zinc finger protein 230 20121230 -9606 50863 NTM UNQ297/PRO337 HNT|IGLON2|NTRI HGNC:17941|MIM:607938|Ensembl:ENSG00000182667|HPRD:06398|Vega:OTTHUMG00000066364 11 11q25 neurotrimin protein-coding NTM neurotrimin O IgLON family member 2 20121230 -9606 50865 HEBP1 - HBP|HEBP HGNC:17176|MIM:605826|Ensembl:ENSG00000013583|HPRD:16162|Vega:OTTHUMG00000168771 12 12p13.1 heme binding protein 1 protein-coding HEBP1 heme binding protein 1 O heme-binding protein 1|p22HBP 20121230 -9606 50937 CDON - CDO|CDON1|HPE11|ORCAM HGNC:17104|MIM:608707|Ensembl:ENSG00000064309|HPRD:16372|Vega:OTTHUMG00000165862 11 11q24.2 cell adhesion associated, oncogene regulated protein-coding CDON cell adhesion associated, oncogene regulated O Cdon homolog|cell adhesion molecule-related/down-regulated by oncogenes|surface glycoprotein, Ig superfamily member 20121230 -9606 50939 IMPG2 - IPM200|RP56|SPACRCAN HGNC:18362|MIM:607056|Ensembl:ENSG00000081148|HPRD:06135|Vega:OTTHUMG00000159091 3 3q12.2-q12.3 interphotoreceptor matrix proteoglycan 2 protein-coding IMPG2 interphotoreceptor matrix proteoglycan 2 O IPM 200|interphotoreceptor matrix proteoglycan IPM 200|interphotoreceptor matrix proteoglycan of 200 kDa|sialoprotein associated with cones and rods proteoglycan 20121230 -9606 50940 PDE11A - PPNAD2 HGNC:8773|MIM:604961|Ensembl:ENSG00000128655|HPRD:05391|Vega:OTTHUMG00000154188 2 2q31.2 phosphodiesterase 11A protein-coding PDE11A phosphodiesterase 11A O cAMP and cGMP cyclic nucleotide phosphodiesterase 11A|dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A 20121230 -9606 50941 IBD5 - - HGNC:5334|MIM:606348 5 5q31-q33 inflammatory bowel disease 5 unknown IBD5 inflammatory bowel disease 5 O - 20121209 -9606 50942 IBD6 - - HGNC:5335|MIM:606674 19 19p13 inflammatory bowel disease 6 unknown IBD6 inflammatory bowel disease 6 O - 20120622 -9606 50943 FOXP3 JM2 AIID|DIETER|IPEX|PIDX|XPID HGNC:6106|MIM:300292|Ensembl:ENSG00000049768|HPRD:02242|Vega:OTTHUMG00000024135 X Xp11.23 forkhead box P3 protein-coding FOXP3 forkhead box P3 O FOXP3delta7|forkhead box protein P3|immune dysregulation, polyendocrinopathy, enteropathy, X-linked|immunodeficiency, polyendocrinopathy, enteropathy, X-linked|scurfin 20121230 -9606 50944 SHANK1 - SPANK-1|SSTRIP|synamon HGNC:15474|MIM:604999|Ensembl:ENSG00000161681|HPRD:05413|Vega:OTTHUMG00000137380 19 19q13.3 SH3 and multiple ankyrin repeat domains 1 protein-coding SHANK1 SH3 and multiple ankyrin repeat domains 1 O SH3 and multiple ankyrin repeat domains protein 1|SSTR-interacting protein|somatostatin receptor-interacting protein 20121230 -9606 50945 TBX22 RP4-795G23.1 CLPA|CPX|TBXX|dJ795G23.1 HGNC:11600|MIM:300307|Ensembl:ENSG00000122145|HPRD:02253|Vega:OTTHUMG00000021901 X Xq21.1 T-box 22 protein-coding TBX22 T-box 22 O T-box protein 22|T-box transcription factor TBX22 20121230 -9606 50947 BFHD - BHD MIM:142669 4 4q35 Beukes familial hip dysplasia unknown - - - - 20120622 -9606 50948 OHDS - - MIM:143850 18 18q Orthostatic hypotensive disorder of Streeten unknown - - - - 20120622 -9606 50951 MMVP1 - MVP|PMV HGNC:19144|MIM:157700 16 16p12.1-p11.2 myxomatous mitral valve prolapse 1 unknown MMVP1 myxomatous mitral valve prolapse 1 O - 20120622 -9606 50952 HMN7A - DHMNVP MIM:158580 2 2q14 Motor neuronopathy, distal hereditary, type VIIA unknown - - - - 20120622 -9606 50960 MYMY1 - MYMY HGNC:16401|MIM:252350 3 3p26-p24.2 moyamoya disease 1 unknown MYMY1 moyamoya disease 1 O - 20120622 -9606 50963 BRKS - TLH1 MIM:259450 17 17p12 Telopeptide lysyl hydroxylase, bone-specific unknown - - - - 20120622 -9606 50964 SOST UNQ2976/PRO7455/PRO7476 CDD|VBCH HGNC:13771|MIM:605740|Ensembl:ENSG00000167941|HPRD:05762|Vega:OTTHUMG00000180888 17 17q11.2 sclerostin protein-coding SOST sclerostin O - 20121230 -9606 50966 ECA1 - - HGNC:3144|MIM:600131 8 8q24 epilepsy, childhood absence 1 unknown ECA1 epilepsy, childhood absence 1 O - 20120622 -9606 50968 FCMTE1 - BAFME|BAFME1|FAME|FAME1|MEBA HGNC:37158|MIM:601068 8 8q24 familial cortical myoclonic tremor with epilepsy 1 unknown FCMTE1 familial cortical myoclonic tremor with epilepsy 1 O - 20120622 -9606 50970 TSG11 - - MIM:603040 11 11q23 Tumor suppressor gene on chromosome 11 unknown - - - - 20120622 -9606 50971 ENFL2 - - MIM:603204 15 15q24 Epilepsy, nocturnal frontal lobe, type 2 unknown - - - - 20120622 -9606 50975 TCO - - MIM:603386 19 19p13.2 Thyroid carcinoma, nonmedullary, with cell oxyphilia unknown - - - - 20120622 -9606 50976 GRD2 - - MIM:603388 20 20q13.11 Graves disease, susceptibility to, 2 unknown - - - - 20120622 -9606 50979 MHW2 - - MIM:603664 4 4q Mental health wellness 2 unknown - - - - 20120622 -9606 50982 NIDDM3 - - MIM:603694 20 20q12-q13.1 Noninsulin-dependent diabetes mellitus 3 unknown - - - - 20120622 -9606 50986 HYT2 - - MIM:604329 15 15q Hypertension, essential, susceptibility to, 2 unknown - - - - 20120622 -9606 50987 FPEVF - - MIM:604364 22 22q11-q12 Epilepsy, partial, with variable foci unknown - - - - 20120622 -9606 50988 WDM - - MIM:604454 2 2p13 Welander distal myopathy unknown - - - - 20120622 -9606 50989 HMSNO - HMSNP MIM:604484 - - Neuropathy, hereditary motor and sensory, Okinawa type unknown - - - - 20120916 -9606 50992 INLNE - - MIM:604781 19 19p13.2-p13.1 Ichthyosis, nonlamellar and nonerythrodermic, congenital, autosomal recessive unknown - - - - 20120622 -9606 50999 TMED5 RP5-976O13.2 CGI-100|p28 HGNC:24251|Ensembl:ENSG00000117500|HPRD:13028|Vega:OTTHUMG00000010162 1 1pter-q31.3 transmembrane emp24 protein transport domain containing 5 protein-coding TMED5 transmembrane emp24 protein transport domain containing 5 O p24 family protein gamma-2|p24gamma2|transmembrane emp24 domain-containing protein 5 20121230 -9606 51000 SLC35B3 CGI-19 C6orf196|PAPST2 HGNC:21601|MIM:610845|Ensembl:ENSG00000124786|HPRD:11577|Vega:OTTHUMG00000014224 6 6p24.3 solute carrier family 35, member B3 protein-coding SLC35B3 solute carrier family 35, member B3 O 3' phosphoadenosine 5' phosphosulfate transporter 2|3'-phosphoadenosine 5'-phosphosulfate transporter|PAPS transporter 2|adenosine 3'-phospho 5'-phosphosulfate transporter 2 20121230 -9606 51001 MTERFD1 CGI-12 mTERF3 HGNC:24258|Ensembl:ENSG00000156469|HPRD:10823|Vega:OTTHUMG00000164713 8 8q22.1 MTERF domain containing 1 protein-coding MTERFD1 MTERF domain containing 1 O mTERF domain-containing protein 1, mitochondrial|mitochondrial transcription termination factor 3 20121230 -9606 51002 TPRKB CGI-121 - HGNC:24259|MIM:608680|Ensembl:ENSG00000144034|Vega:OTTHUMG00000129815 2 2p24.3-p24.1 TP53RK binding protein protein-coding TPRKB TP53RK binding protein O PRPK (p53-related protein kinase)-binding protein|PRPK-binding protein|TP53RK-binding protein 20121230 -9606 51003 MED31 CGI-125 3110004H13Rik|Soh1 HGNC:24260|Ensembl:ENSG00000108590|HPRD:14382|Vega:OTTHUMG00000102051 17 17p13.1 mediator complex subunit 31 protein-coding MED31 mediator complex subunit 31 O hSOH1|mediator complex subunit SOH1|mediator of RNA polymerase II transcription subunit 31|mediator of RNA polymerase II transcription, subunit 31 homolog 20121230 -9606 51004 COQ6 CGI-10 CGI10|COQ10D6 HGNC:20233|MIM:614647|Ensembl:ENSG00000119723|HPRD:16742|Vega:OTTHUMG00000171260 14 14q24.3 coenzyme Q6 homolog, monooxygenase (S. cerevisiae) protein-coding COQ6 coenzyme Q6 homolog, monooxygenase (S. cerevisiae) O coenzyme Q10 monooxygenase 6|ubiquinone biosynthesis monooxygenase COQ6 20121230 -9606 51005 AMDHD2 CGI-14 - HGNC:24262|Ensembl:ENSG00000162066|HPRD:13034|Vega:OTTHUMG00000128866 16 16p13.3 amidohydrolase domain containing 2 protein-coding AMDHD2 amidohydrolase domain containing 2 O amidohydrolase domain-containing protein 2|glcNAc 6-P deacetylase|putative N-acetylglucosamine-6-phosphate deacetylase 20121230 -9606 51006 SLC35C2 RP11-394O2.1 BA394O2.1|C20orf5|CGI-15|OVCOV1 HGNC:17117|Ensembl:ENSG00000080189|HPRD:15371|Vega:OTTHUMG00000033050 20 20q13.12 solute carrier family 35, member C2 protein-coding SLC35C2 solute carrier family 35, member C2 O ovarian cancer overexpressed 1|ovarian cancer-overexpressed gene 1 protein|solute carrier family 35 member C2 20121230 -9606 51008 ASCC1 CGI-18 ASC1p50|p50 HGNC:24268|MIM:614215|Ensembl:ENSG00000138303|Vega:OTTHUMG00000018434 10 10pter-q25.3 activating signal cointegrator 1 complex subunit 1 protein-coding ASCC1 activating signal cointegrator 1 complex subunit 1 O ASC-1 complex subunit P50|trip4 complex subunit p50 20121230 -9606 51009 DERL2 CGI-101 F-LAN-1|F-LANa|FLANa HGNC:17943|MIM:610304|Ensembl:ENSG00000072849|HPRD:16796|Vega:OTTHUMG00000102040 17 17p13.2 derlin 2 protein-coding DERL2 derlin 2 O DERtrin-2|Der1-like domain family, member 2|carcinoma related|degradation in endoplasmic reticulum protein 2|der1-like protein 2|derlin-2 20121230 -9606 51010 EXOSC3 CGI-102 PCH1B|RP11-3J10.8|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 HGNC:17944|MIM:606489|Ensembl:ENSG00000107371|HPRD:16220|Vega:OTTHUMG00000019932 9 9p11 exosome component 3 protein-coding EXOSC3 exosome component 3 O exosome complex component RRP40|exosome complex exonuclease RRP40|ribosomal RNA-processing protein 40 20121230 -9606 51011 FAHD2A CGI-105 - HGNC:24252|Ensembl:ENSG00000115042|HPRD:13287|Vega:OTTHUMG00000130397 2 2q11.2 fumarylacetoacetate hydrolase domain containing 2A protein-coding FAHD2A fumarylacetoacetate hydrolase domain containing 2A O fumarylacetoacetate hydrolase domain containing 1|fumarylacetoacetate hydrolase domain-containing protein 2A 20121230 -9606 51012 SLMO2 CGI-107 C20orf45|PRELID3B|dJ543J19.5 HGNC:15892|Ensembl:ENSG00000101166|HPRD:12771|Vega:OTTHUMG00000032856 20 20q13.32 slowmo homolog 2 (Drosophila) protein-coding SLMO2 slowmo homolog 2 (Drosophila) O protein slowmo homolog 2 20121230 -9606 51013 EXOSC1 RP11-452K12.9 CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13 HGNC:17286|MIM:606493|Ensembl:ENSG00000171311|HPRD:16223|Vega:OTTHUMG00000018854 10 10q24 exosome component 1 protein-coding EXOSC1 exosome component 1 O 3'-5' exoribonuclease CSL4 homolog|CSL4 exosomal core protein homolog|exosomal core protein CSL4|exosome complex component CSL4|homolog of yeast exosomal core protein CSL4 20121230 -9606 51014 TMED7 CGI-109 p27 HGNC:24253|Ensembl:ENSG00000134970|HPRD:13029|Vega:OTTHUMG00000132013 5 5q22.3 transmembrane emp24 protein transport domain containing 7 protein-coding TMED7 transmembrane emp24 protein transport domain containing 7 O p24 family protein gamma-3|p24gamma3|transmembrane emp24 domain-containing protein 7 20121230 -9606 51015 ISOC1 CGI-111 - HGNC:24254|Ensembl:ENSG00000066583|Vega:OTTHUMG00000163144 5 5q22.1-q33.3 isochorismatase domain containing 1 protein-coding ISOC1 isochorismatase domain containing 1 O isochorismatase domain-containing protein 1 20121230 -9606 51016 EMC9 CGI-112 C14orf122|FAM158A HGNC:20273|Ensembl:ENSG00000100908|HPRD:16596|Vega:OTTHUMG00000028796 14 14q11.2 ER membrane protein complex subunit 9 protein-coding EMC9 ER membrane protein complex subunit 9 O UPF0172 protein FAM158A|family with sequence similarity 158, member A 20121230 -9606 51018 RRP15 CGI-115 KIAA0507 HGNC:24255|MIM:611193|Ensembl:ENSG00000067533|HPRD:10822|Vega:OTTHUMG00000039494 1 1q41 ribosomal RNA processing 15 homolog (S. cerevisiae) protein-coding RRP15 ribosomal RNA processing 15 homolog (S. cerevisiae) O RRP15-like protein|ribosomal RNA-processing protein 15 20121230 -9606 51019 CCDC53 AD-016 CGI-116 HGNC:24256|Ensembl:ENSG00000120860|HPRD:13031|Vega:OTTHUMG00000168187 12 12q23.2 coiled-coil domain containing 53 protein-coding CCDC53 coiled-coil domain containing 53 O WASH complex subunit CCDC53|coiled-coil domain-containing protein 53 20121230 -9606 51020 HDDC2 CGI-130 C6orf74|NS5ATP2|dJ167O5.2 HGNC:21078|Ensembl:ENSG00000111906|HPRD:12897|Vega:OTTHUMG00000015506 6 6q13-q24.3 HD domain containing 2 protein-coding HDDC2 HD domain containing 2 O HCV NS5A-transactivated protein 2|HD domain-containing protein 2|hepatitis C virus NS5A-transactivated protein 2 20121230 -9606 51021 MRPS16 CGI-132 COXPD2|MRP-S16|RPMS16 HGNC:14048|MIM:609204|Ensembl:ENSG00000182180|HPRD:14778|Vega:OTTHUMG00000018454 10 10q22.1 mitochondrial ribosomal protein S16 protein-coding MRPS16 mitochondrial ribosomal protein S16 O 28S ribosomal protein S16, mitochondrial|S16mt 20121230 -9606 51022 GLRX2 RP11-101E13.4 CGI-133|GRX2 HGNC:16065|MIM:606820|Ensembl:ENSG00000023572|HPRD:12112|Vega:OTTHUMG00000035677 1 1q31.2 glutaredoxin 2 protein-coding GLRX2 glutaredoxin 2 O bA101E13.1 (GRX2 glutaredoxin (thioltransferase) 2) 20121230 -9606 51023 MRPS18C CGI-134 MRP-S18-1|MRPS18-1 HGNC:16633|MIM:611983|Ensembl:ENSG00000163319|HPRD:14782|Vega:OTTHUMG00000130430 4 4q21.23 mitochondrial ribosomal protein S18C protein-coding MRPS18C mitochondrial ribosomal protein S18C O 28S ribosomal protein S18-1, mitochondrial|28S ribosomal protein S18c, mitochondrial|MRP-S18-c|S18mt-c|mitochondrial ribosomal protein S18-1|mrps18-c 20121230 -9606 51024 FIS1 CGI-135 TTC11 HGNC:21689|MIM:609003|Ensembl:ENSG00000214253|HPRD:12352|Vega:OTTHUMG00000157106 7 7q22.1 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) protein-coding FIS1 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) O FIS1 homolog|H_NH0132A01.6|TPR repeat protein 11|hFis1|mitochondrial fission 1 protein|tetratricopeptide repeat domain 11|tetratricopeptide repeat protein 11 20121230 -9606 51025 PAM16 CGI-136 MAGMAS|TIM16|TIMM16 HGNC:29679|MIM:614336|Ensembl:ENSG00000217930|HPRD:14798|Vega:OTTHUMG00000129466 16 16p13.3 presequence translocase-associated motor 16 homolog (S. cerevisiae) protein-coding PAM16 presequence translocase-associated motor 16 homolog (S. cerevisiae) O magmas-like protein|mitochondria associated protein involved in granulocyte macrophage colony stimulating factor signal transduction|mitochondria-associated granulocyte macrophage CSF-signaling molecule|mitochondrial import inner membrane translocase subunit TIM16 20121230 -9606 51026 GOLT1B CGI-141 GOT1|YMR292W HGNC:20175|Ensembl:ENSG00000111711|HPRD:13035|Vega:OTTHUMG00000169133 12 12p12.1 golgi transport 1B protein-coding GOLT1B golgi transport 1B O hGOT1a|putative NF-kappa-B-activating protein 470|vesicle transport protein GOT1B 20121230 -9606 51027 BOLA1 CGI-143 - HGNC:24263|MIM:613181|Ensembl:ENSG00000178096|HPRD:13036|Vega:OTTHUMG00000012087 1 1q21 bolA homolog 1 (E. coli) protein-coding BOLA1 bolA homolog 1 (E. coli) O bolA-like 1|bolA-like protein 1 20121230 -9606 51028 VPS36 CGI-145 C13orf9|EAP45 HGNC:20312|MIM:610903|Ensembl:ENSG00000136100|HPRD:12620|Vega:OTTHUMG00000016964 13 13q14.3 vacuolar protein sorting 36 homolog (S. cerevisiae) protein-coding VPS36 vacuolar protein sorting 36 homolog (S. cerevisiae) O ELL-associated protein of 45 kDa|ELL-associated protein, 45 kDa|ESCRT-II complex subunit VPS36|vacuolar protein-sorting-associated protein 36 20121230 -9606 51029 DESI2 CGI-146 C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 HGNC:24264|MIM:614638|Ensembl:ENSG00000121644|HPRD:15153|Vega:OTTHUMG00000040398 1 1q44 desumoylating isopeptidase 2 protein-coding DESI2 desumoylating isopeptidase 2 O PPPDE peptidase domain containing 1|PPPDE peptidase domain-containing protein 1|desumoylating isopeptidase 1|family with sequence similarity 152, member A 20121230 -9606 51030 TVP23B CGI-148 FAM18B|FAM18B1|NPD008|YDR084C HGNC:20399|Ensembl:ENSG00000171928|HPRD:13293|Vega:OTTHUMG00000059052 17 17p11.2 trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) protein-coding TVP23B trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) O family with sequence similarity 18, member B|family with sequence similarity 18, member B1|protein FAM18B1 20121230 -9606 51031 GLOD4 CGI-150 C17orf25|HC71 HGNC:14111|Ensembl:ENSG00000167699|HPRD:12678|Vega:OTTHUMG00000177497 17 17p13.3 glyoxalase domain containing 4 protein-coding GLOD4 glyoxalase domain containing 4 O glyoxalase domain-containing protein 4 20121230 -9606 51032 CELA2B RP11-265F14.2 ELA2B HGNC:29995|MIM:609444|Ensembl:ENSG00000215704|HPRD:06496|Vega:OTTHUMG00000002259 1 1p36.21 chymotrypsin-like elastase family, member 2B protein-coding CELA2B chymotrypsin-like elastase family, member 2B O chymotrypsin-like elastase family member 2B|elastase 2B|elastase-2B|pancreatic elastase IIB (ELA2B) 20121230 -9606 51035 UBXN1 - 2B28|SAKS1|UBXD10 HGNC:18402|Ensembl:ENSG00000162191|HPRD:11266|Vega:OTTHUMG00000167580 11 11q12.3 UBX domain protein 1 protein-coding UBXN1 UBX domain protein 1 O SAPK substrate protein 1|UBA/UBX 33.3 kDa protein|UBX domain-containing protein 1 20121230 -9606 51042 ZNF593 RP11-96L14.6 ZT86 HGNC:30943|Ensembl:ENSG00000142684|HPRD:15866|Vega:OTTHUMG00000007538 1 1p36.11 zinc finger protein 593 protein-coding ZNF593 zinc finger protein 593 O zinc finger protein T86 20121230 -9606 51043 ZBTB7B RP11-307C12.9 THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX HGNC:18668|MIM:607646|Ensembl:ENSG00000160685|HPRD:09625|Vega:OTTHUMG00000037414 1 1q21.3 zinc finger and BTB domain containing 7B protein-coding ZBTB7B zinc finger and BTB domain containing 7B O T-helper-inducing POZ/Krueppel-like factor|krueppel-related zinc finger protein cKrox|zinc finger and BTB domain containing 15|zinc finger and BTB domain-containing protein 7B|zinc finger protein 67 homolog|zinc finger protein 857B|zinc finger protein Th-POK 20121230 -9606 51046 ST8SIA3 - SIAT8C|ST8SiaIII HGNC:14269|MIM:609478|Ensembl:ENSG00000177511|HPRD:15343|Vega:OTTHUMG00000180101 18 18q21.31 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 O SIAT8-C|alpha-2,8-sialyltransferase 8C|alpha-2,8-sialyltransferase III|sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase|sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)|sialytransferase St8Sia III 20121230 -9606 51050 PI15 - CRISP8|P24TI|P25TI HGNC:8946|MIM:607076|Ensembl:ENSG00000137558|HPRD:06150|Vega:OTTHUMG00000164528 8 8q21.11 peptidase inhibitor 15 protein-coding PI15 peptidase inhibitor 15 O 25 kDa trypsin inhibitor|CRISP-8|PI-15|cysteine-rich secretory protein 8|protease inhibitor 15|sugarCrisp 20121230 -9606 51052 PRLH - PRH|PRRP HGNC:17945|MIM:602663|Ensembl:ENSG00000071677|HPRD:04046|Vega:OTTHUMG00000133296 2 2q37.3 prolactin releasing hormone protein-coding PRLH prolactin releasing hormone O preproprolactin-releasing peptide|prolactin-releasing hormone|prolactin-releasing peptide 20121230 -9606 51053 GMNN - Gem HGNC:17493|MIM:602842|Ensembl:ENSG00000112312|HPRD:06783|Vega:OTTHUMG00000014363 6 6p22.3 geminin, DNA replication inhibitor protein-coding GMNN geminin, DNA replication inhibitor O geminin 20121230 -9606 51054 PLEKHA8P1 HAW1053 PLEKHA9 HGNC:30222|HPRD:15143 12 12q pleckstrin homology domain containing, family A member 8 pseudogene 1 pseudo PLEKHA8P1 pleckstrin homology domain containing, family A member 8 pseudogene 1 O - 20121230 -9606 51056 LAP3 - LAP|LAPEP|PEPS HGNC:18449|MIM:170250|Ensembl:ENSG00000002549|HPRD:07516|Vega:OTTHUMG00000048214 4 4p15.32 leucine aminopeptidase 3 protein-coding LAP3 leucine aminopeptidase 3 O LAP-3|cytosol aminopeptidase|leucyl aminopeptidase|peptidase S|proline aminopeptidase|prolyl aminopeptidase 20121230 -9606 51057 WDPCP - BBS15|C2orf86|FRITZ|FRTZ HGNC:28027|MIM:613580|Ensembl:ENSG00000143951|HPRD:14228|Vega:OTTHUMG00000152566 2 2p15 WD repeat containing planar cell polarity effector protein-coding WDPCP WD repeat containing planar cell polarity effector O Bardet-Biedl syndrome 15 protein|WD repeat-containing and planar cell polarity effector protein fritz homolog|WD repeat-containing protein C2orf86 20121230 -9606 51058 ZNF691 RP11-342M1.5 Zfp691 HGNC:28028|Ensembl:ENSG00000164011|HPRD:14229|Vega:OTTHUMG00000007623 1 1p34.2 zinc finger protein 691 protein-coding ZNF691 zinc finger protein 691 O - 20121230 -9606 51059 FAM135B - C8ORFK32 HGNC:28029|Ensembl:ENSG00000147724|HPRD:14230|Vega:OTTHUMG00000149864 8 8q24.23 family with sequence similarity 135, member B protein-coding FAM135B family with sequence similarity 135, member B O protein FAM135B 20121230 -9606 51060 TXNDC12 UNQ713/PRO1376 AG1|AGR1|ERP16|ERP18|ERP19|PDIA16|TLP19|hAG-1|hTLP19 HGNC:24626|MIM:609448|Ensembl:ENSG00000117862|HPRD:11633|Vega:OTTHUMG00000008629 1 1p32.3 thioredoxin domain containing 12 (endoplasmic reticulum) protein-coding TXNDC12 thioredoxin domain containing 12 (endoplasmic reticulum) O ER protein 18|ER protein 19|anterior gradient homolog 1|endoplasmic reticulum protein ERp19|endoplasmic reticulum resident protein 18|endoplasmic reticulum resident protein 19|endoplasmic reticulum thioredoxin superfamily member, 18 kDa|protein disulfide isomerase family A, member 16|thioredoxin domain-containing protein 12|thioredoxin-like protein p19 20121230 -9606 51061 TXNDC11 - EFP1 HGNC:28030|Ensembl:ENSG00000153066|HPRD:07125|Vega:OTTHUMG00000177467 16 16p13.13 thioredoxin domain containing 11 protein-coding TXNDC11 thioredoxin domain containing 11 O EF-hand binding protein 1|EF-hand-binding protein 1|thioredoxin domain-containing protein 11 20121230 -9606 51062 ATL1 - AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 HGNC:11231|MIM:606439|Ensembl:ENSG00000198513|HPRD:05918|Vega:OTTHUMG00000140297 14 14q22.1 atlastin GTPase 1 protein-coding ATL1 atlastin GTPase 1 O GBP-3|GTP-binding protein 3|atlastin-1|brain-specific GTP-binding protein|guanine nucleotide-binding protein 3|guanylate-binding protein 3|hGBP3|spastic paraplegia 3 protein A 20121230 -9606 51063 CALHM2 - FAM26B HGNC:23493|MIM:612235|Ensembl:ENSG00000138172|HPRD:13301|Vega:OTTHUMG00000018990 10 10q24.33 calcium homeostasis modulator 2 protein-coding CALHM2 calcium homeostasis modulator 2 O calcium homeostasis modulator protein 2|family with sequence similarity 26, member B 20121230 -9606 51065 RPS27L - - HGNC:18476|MIM:612055|Ensembl:ENSG00000185088|HPRD:18003|Vega:OTTHUMG00000155301 15 15q22.2 ribosomal protein S27-like protein-coding RPS27L ribosomal protein S27-like O 40S ribosomal protein S27-like 20121230 -9606 51066 SSUH2 FLS485 C3orf32|SSU-2|fls485 HGNC:24809|Ensembl:ENSG00000125046|HPRD:11267|Vega:OTTHUMG00000122075 3 3p26.1 ssu-2 homolog (C. elegans) protein-coding SSUH2 ssu-2 homolog (C. elegans) O uncharacterized protein C3orf32 20121230 -9606 51067 YARS2 CGI-04 MLASA2|MT-TYRRS|TYRRS HGNC:24249|MIM:610957|Ensembl:ENSG00000139131|HPRD:13025|Vega:OTTHUMG00000169454 12 12p11.21 tyrosyl-tRNA synthetase 2, mitochondrial protein-coding YARS2 tyrosyl-tRNA synthetase 2, mitochondrial O tyrosine tRNA ligase 2, mitochondrial|tyrosine--tRNA ligase, mitochondrial 20121230 -9606 51068 NMD3 CGI-07 - HGNC:24250|MIM:611021|Ensembl:ENSG00000169251|HPRD:13026|Vega:OTTHUMG00000159063 3 3q26.1 NMD3 homolog (S. cerevisiae) protein-coding NMD3 NMD3 homolog (S. cerevisiae) O 60S ribosomal export protein NMD3|hNMD3 20121230 -9606 51069 MRPL2 CGI-22 MRP-L14|RPML14 HGNC:14056|MIM:611822|Ensembl:ENSG00000112651|HPRD:14745|Vega:OTTHUMG00000014719 6 6p21.3 mitochondrial ribosomal protein L2 protein-coding MRPL2 mitochondrial ribosomal protein L2 O 39S ribosomal protein L2, mitochondrial|L2mt|MRP-L2 20121230 -9606 51070 NOSIP CGI-25 - HGNC:17946|Ensembl:ENSG00000142546|HPRD:17642 19 19q13.33 nitric oxide synthase interacting protein protein-coding NOSIP nitric oxide synthase interacting protein O eNOS-interacting protein|nitric oxide synthase-interacting protein 20121230 -9606 51071 DERA CGI-26 DEOC HGNC:24269|Ensembl:ENSG00000023697|HPRD:13138|Vega:OTTHUMG00000165537 12 12p12.3 deoxyribose-phosphate aldolase (putative) protein-coding DERA deoxyribose-phosphate aldolase (putative) O 2-deoxy-D-ribose 5-phosphate aldolase|2-deoxyribose-5-phosphate aldolase homolog|deoxyriboaldolase|phosphodeoxyriboaldolase|putative deoxyribose-phosphate aldolase 20121230 -9606 51072 MEMO1 CGI-27 C2orf4|MEMO|NS5ATP7 HGNC:14014|MIM:611786|Ensembl:ENSG00000162959|HPRD:12814|Vega:OTTHUMG00000128453 2 2p22-p21 mediator of cell motility 1 protein-coding MEMO1 mediator of cell motility 1 O C21orf19-like protein|HCV NS5A-transactivated protein 7|hepatitis C virus NS5A-transactivated protein 7|mediator of ErbB2-driven cell motility 1|memo-1|protein MEMO1 20121230 -9606 51073 MRPL4 CDABP0091 CGI-28|L4mt HGNC:14276|MIM:611823|Ensembl:ENSG00000105364|HPRD:14759|Vega:OTTHUMG00000180400 19 19p13.2 mitochondrial ribosomal protein L4 protein-coding MRPL4 mitochondrial ribosomal protein L4 O 39S ribosomal protein L4, mitochondrial|MRP-L4 20121230 -9606 51074 APIP CGI-29 APIP2|CGI29|MMRP19|dJ179L10.2 HGNC:17581|MIM:612491|Ensembl:ENSG00000149089|HPRD:14725|Vega:OTTHUMG00000166455 11 11p13 APAF1 interacting protein protein-coding APIP APAF1 interacting protein O APAF1-interacting protein|MTRu-1-P dehydratase|probable methylthioribulose-1-phosphate dehydratase 20121230 -9606 51075 TMX2 CGI-31 PDIA12|PIG26|TXNDC14 HGNC:30739|Ensembl:ENSG00000213593|Vega:OTTHUMG00000167200 11 11cen-q22.3 thioredoxin-related transmembrane protein 2 protein-coding TMX2 thioredoxin-related transmembrane protein 2 O cell proliferation-inducing gene 26 protein|growth-inhibiting gene 11|protein disulfide isomerase family A, member 12|thioredoxin domain-containing protein 14 20121230 -9606 51076 CUTC CGI-32 RP11-483F11.3 HGNC:24271|MIM:610101|Ensembl:ENSG00000119929|HPRD:13100|Vega:OTTHUMG00000018889 10 10q24.2 cutC copper transporter homolog (E. coli) protein-coding CUTC cutC copper transporter homolog (E. coli) O copper homeostasis protein cutC homolog 20121230 -9606 51077 FCF1 CGI-35 Bka|C14orf111|UTP24 HGNC:20220|Ensembl:ENSG00000119616|HPRD:12633|Vega:OTTHUMG00000171480 14 14q24.3 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) protein-coding FCF1 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) O rRNA-processing protein FCF1 homolog 20121230 -9606 51078 THAP4 CGI-36 PP238 HGNC:23187|MIM:612533|Ensembl:ENSG00000176946|HPRD:11630|Vega:OTTHUMG00000133410 2 2q37.3 THAP domain containing 4 protein-coding THAP4 THAP domain containing 4 O THAP domain-containing protein 4 20121230 -9606 51079 NDUFA13 CGI-39 B16.6|CDA016|GRIM-19|GRIM19 HGNC:17194|MIM:609435|Ensembl:ENSG00000186010|HPRD:09452|Vega:OTTHUMG00000162211 19 19p13.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 protein-coding NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 O CI-B16.6|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13|NADH-ubiquinone oxidoreductase B16.6 subunit|cell death regulatory protein GRIM-19|cell death-regulatory protein GRIM19|complex I B16.6 subunit|complex I-B16.6|gene associated with retinoic and IFN-induced mortality 19 protein|gene associated with retinoic and interferon-induced mortality 19 protein 20121230 -9606 51081 MRPS7 - MRP-S|MRP-S7|RP-S7|RPMS7|S7mt|bMRP27a HGNC:14499|MIM:611974|Ensembl:ENSG00000125445|HPRD:17601|Vega:OTTHUMG00000179484 17 17q25 mitochondrial ribosomal protein S7 protein-coding MRPS7 mitochondrial ribosomal protein S7 O 28S ribosomal protein S7, mitochondrial|30S ribosomal protein S7 homolog|bMRP-27a 20121230 -9606 51082 POLR1D - AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 HGNC:20422|MIM:613715|Ensembl:ENSG00000186184|HPRD:14717|HPRD:17877|Vega:OTTHUMG00000016635 13 13q12.2 polymerase (RNA) I polypeptide D, 16kDa protein-coding POLR1D polymerase (RNA) I polypeptide D, 16kDa O DNA-directed RNA polymerase I subunit D|DNA-directed RNA polymerases I and III subunit RPAC2|RNA polymerases I and III subunit AC2 20121230 -9606 51083 GAL - GAL-GMAP|GALN|GLNN|GMAP HGNC:4114|MIM:137035|Ensembl:ENSG00000069482|HPRD:00658|Vega:OTTHUMG00000167890 11 11q13.3 galanin/GMAP prepropeptide protein-coding GAL galanin/GMAP prepropeptide O galanin peptides|galanin prepropeptide|galanin-message-associated peptide|galanin-related peptide 20121230 -9606 51084 CRYL1 - GDH|lambda-CRY HGNC:18246|MIM:609877|Ensembl:ENSG00000165475|HPRD:16762|Vega:OTTHUMG00000016516 13 13q12.11 crystallin, lambda 1 protein-coding CRYL1 crystallin, lambda 1 O L-gulonate 3-dehydrogenase|crystallin, lamda 1|gul3DH|lambda-crystallin homolog 20121230 -9606 51085 MLXIPL - CHREBP|MIO|MONDOB|WBSCR14|WS-bHLH|bHLHd14 HGNC:12744|MIM:605678|Ensembl:ENSG00000009950|HPRD:12033|Vega:OTTHUMG00000129995 7 7q11.23 MLX interacting protein-like protein-coding MLXIPL MLX interacting protein-like O MLX-interacting protein-like|Mlx interactor|WS basic-helix-loop-helix leucine zipper protein|Williams Beuren syndrome chromosome region 14|Williams-Beuren syndrome chromosome region 14 protein 1|Williams-Beuren syndrome chromosome region 14 protein 2|carbohydrate response element binding protein|carbohydrate-responsive element-binding protein|class D basic helix-loop-helix protein 14|williams-Beuren syndrome chromosomal region 14 protein 20121230 -9606 51086 TNNI3K - CARK HGNC:19661|MIM:613932|Ensembl:ENSG00000116783|HPRD:18208|Vega:OTTHUMG00000171318 1 1p31.1 TNNI3 interacting kinase protein-coding TNNI3K TNNI3 interacting kinase O cardiac ankyrin repeat kinase|cardiac troponin I-interacting kinase|serine/threonine-protein kinase TNNI3K 20121230 -9606 51087 YBX2 - CONTRIN|CSDA3|DBPC|MSY2 HGNC:17948|MIM:611447|Ensembl:ENSG00000006047|HPRD:18311|Vega:OTTHUMG00000177992 17 17p13.1 Y box binding protein 2 protein-coding YBX2 Y box binding protein 2 O DNA-binding protein C|MSY2 homolog|Y-box-binding protein 2|germ cell specific Y-box binding protein|germ cell-specific Y-box-binding protein 20121230 -9606 51088 KLHL5 - - HGNC:6356|MIM:608064|Ensembl:ENSG00000109790|HPRD:10477|Vega:OTTHUMG00000097819 4 4p14 kelch-like 5 (Drosophila) protein-coding KLHL5 kelch-like 5 (Drosophila) O kelch-like protein 5|lymphocyte activation-associated protein 20121230 -9606 51090 PLLP - PMLP|TM4SF11 HGNC:18553|MIM:600340|Ensembl:ENSG00000102934|HPRD:11854|Vega:OTTHUMG00000133465 16 16q13 plasmolipin protein-coding PLLP plasmolipin O plasma membrane proteolipid (plasmolipin)|transmembrane 4 superfamily member 11 (plasmolipin) 20121230 -9606 51091 SEPSECS - LP|PCH2D|SLA|SLA/LP HGNC:30605|MIM:613009|Ensembl:ENSG00000109618|HPRD:11561|Vega:OTTHUMG00000128563 4 4p15.2 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase O O-phosphoseryl-tRNA(Sec) selenium transferase|SLA-p35|SLA/LP autoantigen|UGA suppressor tRNA-associated protein|liver-pancreas antigen|soluble liver antigen|soluble liver antigen/liver pancreas antigen|tRNA(Ser/Sec)-associated antigenic protein 20121230 -9606 51092 SIDT2 CGI-40 - HGNC:24272|Ensembl:ENSG00000149577|HPRD:15345|Vega:OTTHUMG00000167065 11 11q23.3 SID1 transmembrane family, member 2 protein-coding SIDT2 SID1 transmembrane family, member 2 O SID1 transmembrane family member 2 20121230 -9606 51093 RRNAD1 RP11-66D17.7 C1orf66|CGI-41 HGNC:24273|Ensembl:ENSG00000143303|HPRD:10824|Vega:OTTHUMG00000041302 1 1q23.1 ribosomal RNA adenine dimethylase domain containing 1 protein-coding RRNAD1 ribosomal RNA adenine dimethylase domain containing 1 O protein RRNAD1|ribosomal RNA adenine dimethylase domain-containing protein 1 20121230 -9606 51094 ADIPOR1 CGI-45 ACDCR1|CGI45|PAQR1|TESBP1A HGNC:24040|MIM:607945|Ensembl:ENSG00000159346|HPRD:06402|Vega:OTTHUMG00000041391 1 1q32.1 adiponectin receptor 1 protein-coding ADIPOR1 adiponectin receptor 1 O adiponectin receptor protein 1|progestin and adipoQ receptor family member I 20121230 -9606 51095 TRNT1 CGI-47 CCA1|MtCCA HGNC:17341|MIM:612907|Ensembl:ENSG00000072756|HPRD:18227|Vega:OTTHUMG00000090259 3 3p25.1 tRNA nucleotidyl transferase, CCA-adding, 1 protein-coding TRNT1 tRNA nucleotidyl transferase, CCA-adding, 1 O CCA tRNA nucleotidyltransferase 1, mitochondrial|mitochondrial CCA-adding tRNA-nucleotidyltransferase|mitochondrial tRNA nucleotidyl transferase, CCA-adding|mt CCA-adding enzyme|mt tRNA CCA-diphosphorylase|mt tRNA CCA-pyrophosphorylase|mt tRNA adenylyltransferase|tRNA-nucleotidyltransferase 1, mitochondrial 20121230 -9606 51096 UTP18 CDABP0061 CGI-48|WDR50 HGNC:24274|MIM:612816|Ensembl:ENSG00000011260|Vega:OTTHUMG00000162370 17 17q21.33 UTP18 small subunit (SSU) processome component homolog (yeast) protein-coding UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) O U3 small nucleolar RNA-associated protein 18 homolog|UTP18, small subunit (SSU) processome component, homolog|WD repeat domain 50|WD repeat-containing protein 50 20121230 -9606 51097 SCCPDH CGI-49 NET11|RP11-439E19.2 HGNC:24275|Ensembl:ENSG00000143653|HPRD:13038|Vega:OTTHUMG00000040221 1 1q44 saccharopine dehydrogenase (putative) protein-coding SCCPDH saccharopine dehydrogenase (putative) O probable saccharopine dehydrogenase|saccharopine dehydrogenase-like oxidoreductase 20121230 -9606 51098 IFT52 RP5-1028D15.4 C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1 HGNC:15901|Ensembl:ENSG00000101052|HPRD:12789|Vega:OTTHUMG00000032513 20 - intraflagellar transport 52 homolog (Chlamydomonas) protein-coding IFT52 intraflagellar transport 52 homolog (Chlamydomonas) O intraflagellar transport protein 52 homolog|protein NGD5 homolog 20121230 -9606 51099 ABHD5 CGI-58 CDS|CGI58|IECN2|NCIE2 HGNC:21396|MIM:604780|Ensembl:ENSG00000011198|HPRD:05308|HPRD:11986|Vega:OTTHUMG00000133039 3 3p21 abhydrolase domain containing 5 protein-coding ABHD5 abhydrolase domain containing 5 O 1-acylglycerol-3-phosphate O-acyltransferase ABHD5|abhydrolase domain-containing protein 5|lipid droplet-binding protein CGI-58 20121230 -9606 51100 SH3GLB1 CGI-61 Bif-1|PPP1R70|dJ612B15.2 HGNC:10833|MIM:609287|Ensembl:ENSG00000097033|HPRD:15333|Vega:OTTHUMG00000010257 1 1p22 SH3-domain GRB2-like endophilin B1 protein-coding SH3GLB1 SH3-domain GRB2-like endophilin B1 O Bax-interacting factor 1|SH3 domain-containing GRB2-like protein B1|SH3-containing protein SH3GLB1|endophilin-B1|protein phosphatase 1, regulatory subunit 70 20121230 -9606 51101 ZC2HC1A CGI-62 C8orf70|FAM164A HGNC:24277|Ensembl:ENSG00000104427|HPRD:13039|Vega:OTTHUMG00000164619 8 8q21.12 zinc finger, C2HC-type containing 1A protein-coding ZC2HC1A zinc finger, C2HC-type containing 1A O family with sequence similarity 164, member A|protein FAM164A|zinc finger C2HC domain-containing protein 1A 20121230 -9606 51102 MECR RP11-467D18.1 CGI-63|FASN2B|NRBF1 HGNC:19691|MIM:608205|Ensembl:ENSG00000116353|HPRD:12192|Vega:OTTHUMG00000059082 1 1p35.3 mitochondrial trans-2-enoyl-CoA reductase protein-coding MECR mitochondrial trans-2-enoyl-CoA reductase O NRBF-1|homolog of yeast 2-enoyl thioester reductase|hsNrbf-1|mitochondrial 2-enoyl thioester reductase|nuclear receptor binding factor 1|nuclear receptor-binding factor 1|trans-2-enoyl-CoA reductase, mitochondrial 20121230 -9606 51103 NDUFAF1 CGI-65 CGI65|CIA30 HGNC:18828|MIM:606934|Ensembl:ENSG00000137806|HPRD:09500|Vega:OTTHUMG00000130340 15 15q11.2-q21.3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 protein-coding NDUFAF1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 O NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1|NADH-ubiquinone oxidoreductase 1 alpha subcomplex, assembly factor 1|complex I intermediate-associated protein 30, mitochondrial 20121230 -9606 51104 FAM108B1 CGI-67 C9orf77|RP11-409O11.2 HGNC:24278|Ensembl:ENSG00000107362|HPRD:12978|Vega:OTTHUMG00000020001 9 9q21.13 family with sequence similarity 108, member B1 protein-coding FAM108B1 family with sequence similarity 108, member B1 O abhydrolase domain-containing protein FAM108B1 20121230 -9606 51105 PHF20L1 CGI-72 - HGNC:24280|Ensembl:ENSG00000129292|HPRD:15125|Vega:OTTHUMG00000148656 8 8q24.22 PHD finger protein 20-like 1 protein-coding PHF20L1 PHD finger protein 20-like 1 O PHD finger protein 20-like protein 1|tudor domain-containing protein PHF20L1 20121230 -9606 51106 TFB1M CGI-75 CGI75|mtTFB|mtTFB1 HGNC:17037|MIM:607033|Ensembl:ENSG00000029639|HPRD:09515|Vega:OTTHUMG00000015881 6 6q25.1-q25.3 transcription factor B1, mitochondrial protein-coding TFB1M transcription factor B1, mitochondrial O S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1|dimethyladenosine transferase 1, mitochondrial|h-mtTFB1|hTFB1M|homolog of yeast mitochondrial transcription factor B|mitochondrial 12S rRNA dimethylase 1|mitochondrial dimethyladenosine transferase 1 20121230 -9606 51107 APH1A RP4-790G17.3 6530402N02Rik|APH-1|APH-1A|CGI-78 HGNC:29509|MIM:607629|Ensembl:ENSG00000117362|Vega:OTTHUMG00000012545 1 1p36.13-q31.3 anterior pharynx defective 1 homolog A (C. elegans) protein-coding APH1A anterior pharynx defective 1 homolog A (C. elegans) O aph-1alpha|gamma-secretase subunit APH-1A|presenilin-stabilization factor 20121230 -9606 51108 METTL9 CGI-81 DREV|DREV1|PAP1 HGNC:24586|MIM:609388|Ensembl:ENSG00000197006|HPRD:16839|Vega:OTTHUMG00000131584 16 16p12.2 methyltransferase like 9 protein-coding METTL9 methyltransferase like 9 O DORA reverse strand protein 1|methyltransferase-like protein 9|p53 activated protein 1 20121230 -9606 51109 RDH11 CGI-82 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|SCALD|SDR7C1 HGNC:17964|MIM:607849|Ensembl:ENSG00000072042|HPRD:09707|Vega:OTTHUMG00000171196 14 14q24.1 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) protein-coding RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) O HCV core-binding protein HCBP12|androgen-regulated short-chain dehydrogenase/reductase 1|prostate short-chain dehydrogenase reductase 1|prostate short-chain dehydrogenase/reductase 1|retinal reductase 1|retinol dehydrogenase 11|short chain dehydrogenase/reductase family 7C, member 1 20121230 -9606 51110 LACTB2 CGI-83 - HGNC:18512|Ensembl:ENSG00000147592|HPRD:13955|Vega:OTTHUMG00000164430 8 8q13.3 lactamase, beta 2 protein-coding LACTB2 lactamase, beta 2 O beta-lactamase-like protein 2 20121230 -9606 51111 SUV420H1 CGI-85 CGI85|KMT5B HGNC:24283|MIM:610881|Ensembl:ENSG00000110066|HPRD:11616|Vega:OTTHUMG00000150484 11 11q13.2 suppressor of variegation 4-20 homolog 1 (Drosophila) protein-coding SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) O C630029K18Rik|histone-lysine N-methyltransferase SUV420H1|lysine N-methyltransferase 5B|su(var)4-20 homolog 1|suv4-20h1 20121230 -9606 51112 TRAPPC12 CGI-87 TTC-15|TTC15 HGNC:24284|MIM:614139|Ensembl:ENSG00000171853|HPRD:15580|Vega:OTTHUMG00000090328 2 2p25.3 trafficking protein particle complex 12 protein-coding TRAPPC12 trafficking protein particle complex 12 O TPR repeat protein 15|tetratricopeptide repeat domain 15|tetratricopeptide repeat protein 15|trafficking protein particle complex subunit 12 20121230 -9606 51114 ZDHHC9 RP6-190D15.1 CGI89|CXorf11|DHHC9|MMSA1|MRXSZ|ZDHHC10|ZNF379|ZNF380 HGNC:18475|MIM:300646|Ensembl:ENSG00000188706|HPRD:06759|Vega:OTTHUMG00000022375 X Xq26.1 zinc finger, DHHC-type containing 9 protein-coding ZDHHC9 zinc finger, DHHC-type containing 9 O Asp-His-His-Cys domain containing protein 9|antigen MMSA-1|palmitoyltransferase ZDHHC9|zinc finger protein 379|zinc finger protein 380|zinc finger, DHHC domain containing 10 20121230 -9606 51115 FAM82B CGI-90 RMD-1|RMD1 HGNC:24285|MIM:611871|Ensembl:ENSG00000176623|HPRD:13042|Vega:OTTHUMG00000163692 8 8q21.3 family with sequence similarity 82, member B protein-coding FAM82B family with sequence similarity 82, member B O hRMD-1|microtubule-associated protein|regulator of microtubule dynamics 1|regulator of microtubule dynamics protein 1 20121230 -9606 51116 MRPS2 CGI-91 MRP-S2|S2mt HGNC:14495|MIM:611971|Ensembl:ENSG00000122140|HPRD:14783|Vega:OTTHUMG00000020910 9 9q34 mitochondrial ribosomal protein S2 protein-coding MRPS2 mitochondrial ribosomal protein S2 O 28S ribosomal protein S2, mitochondrial 20121230 -9606 51117 COQ4 RP11-339B21.5 CGI-92 HGNC:19693|MIM:612898|Ensembl:ENSG00000167113|HPRD:16741|Vega:OTTHUMG00000020743 9 9q34.11 coenzyme Q4 homolog (S. cerevisiae) protein-coding COQ4 coenzyme Q4 homolog (S. cerevisiae) O coenzyme Q biosynthesis protein 4 homolog|ubiquinone biosynthesis protein COQ4 homolog, mitochondrial 20121230 -9606 51118 UTP11L CGI-94 CGI94 HGNC:24329|MIM:609440|Ensembl:ENSG00000183520|HPRD:16711|Vega:OTTHUMG00000004435 1 1p34.3 UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) protein-coding UTP11L UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) O U3 snoRNA-associated protein 11|UTP11-like protein|probable U3 small nucleolar RNA-associated protein 11 20121230 -9606 51119 SBDS CGI-97 SDS|SWDS HGNC:19440|MIM:607444|Ensembl:ENSG00000126524|HPRD:07393|Vega:OTTHUMG00000023165 7 7q11.21 Shwachman-Bodian-Diamond syndrome protein-coding SBDS Shwachman-Bodian-Diamond syndrome O ribosome maturation protein SBDS 20121230 -9606 51121 RPL26L1 - RPL26P1 HGNC:17050|Ensembl:ENSG00000037241|HPRD:17993|Vega:OTTHUMG00000130517 5 5q35.1 ribosomal protein L26-like 1 protein-coding RPL26L1 ribosomal protein L26-like 1 O 60S ribosomal protein L26-like 1|ribosomal protein L26 homolog|ribosomal protein L26 pseudogene 1 20121230 -9606 51122 COMMD2 HSPC042 - HGNC:24993|Ensembl:ENSG00000114744|HPRD:13081|Vega:OTTHUMG00000159616 3 3q25.1 COMM domain containing 2 protein-coding COMMD2 COMM domain containing 2 O COMM domain-containing protein 2 20121230 -9606 51123 ZNF706 HSPC038 PNAS-106|PNAS-113 HGNC:24992|Ensembl:ENSG00000120963|HPRD:13688|Vega:OTTHUMG00000164823 8 8q22.3 zinc finger protein 706 protein-coding ZNF706 zinc finger protein 706 O - 20121230 -9606 51124 IER3IP1 HSPC039 MEDS|PRO2309 HGNC:18550|MIM:609382|Ensembl:ENSG00000134049|HPRD:13727|Vega:OTTHUMG00000132650 18 18q12 immediate early response 3 interacting protein 1 protein-coding IER3IP1 immediate early response 3 interacting protein 1 O immediate early response 3-interacting protein 1 20121230 -9606 51125 GOLGA7 HDCKB03P GCP16|GOLGA3AP1|GOLGA7A|HSPC041 HGNC:24876|MIM:609453|Ensembl:ENSG00000147533|HPRD:13595|Vega:OTTHUMG00000164077 8 8p11.21 golgin A7 protein-coding GOLGA7 golgin A7 O Golgi complex-associated protein of 16kDa|Golgin subfamily A member 7|golgi autoantigen, golgin subfamily a, 7|golgi complex-associated protein of 16 kDa 20121230 -9606 51126 NAA20 RP5-1002M8.3 NAT3|NAT5|dJ1002M8.1 HGNC:15908|MIM:610833|Ensembl:ENSG00000173418|HPRD:07136|Vega:OTTHUMG00000031998 20 20p11.23 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit O N-acetyltransferase 3 homolog|N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae)|N-acetyltransferase 5 (GCN5-related, putative)|N-acetyltransferase 5, ARD1 subunit (arrest-defective 1, S. cerevisiae, homolog)|N-alpha-acetyltransferase 20|N-alpha-acetyltransferase 20, NatB catalytic subunit|N-terminal acetyltransferase B complex catalytic subunit NAA20|N-terminal acetyltransferase B complex catalytic subunit NAT5|N-terminal acetyltransferase complex ARD1 subunit|methionine N-acetyltransferase|natB catalytic subunit|natB complex subunit NAT5 20121230 -9606 51127 TRIM17 RP5-915N17.1 RBCC|RNF16|terf HGNC:13430|MIM:606123|Ensembl:ENSG00000162931|HPRD:05839|Vega:OTTHUMG00000039974 1 1q42 tripartite motif containing 17 protein-coding TRIM17 tripartite motif containing 17 O E3 ubiquitin-protein ligase TRIM17|RING finger protein terf|ring finger protein 16|testis RING finger protein|tripartite motif-containing 17|tripartite motif-containing protein 17 20121230 -9606 51128 SAR1B - ANDD|CMRD|GTBPB|SARA2 HGNC:10535|MIM:607690|Ensembl:ENSG00000152700|HPRD:09647|Vega:OTTHUMG00000129114 5 5q31.1 SAR1 homolog B (S. cerevisiae) protein-coding SAR1B SAR1 homolog B (S. cerevisiae) O 2310075M17Rik|GTP-binding protein B|GTP-binding protein SAR1b|GTP-binding protein Sara|SAR1a gene homolog 2 20121230 -9606 51129 ANGPTL4 PP1158 ANGPTL2|ARP4|FIAF|HFARP|NL2|PGAR|pp1158 HGNC:16039|MIM:605910|Ensembl:ENSG00000167772|HPRD:16173 19 19p13.3 angiopoietin-like 4 protein-coding ANGPTL4 angiopoietin-like 4 O PPARG angiopoietin related protein|angiopoietin-like protein 4|angiopoietin-related protein 4|fasting-induced adipose factor|hepatic angiopoietin-related protein|hepatic fibrinogen/angiopoietin-related protein|peroxisome proliferator-activated receptor (PPAR) gamma induced angiopoietin-related protein 20121230 -9606 51130 ASB3 - ASB-3 HGNC:16013|MIM:605760|Ensembl:ENSG00000115239|HPRD:05769|Vega:OTTHUMG00000129279 2 2p16.2 ankyrin repeat and SOCS box containing 3 protein-coding ASB3 ankyrin repeat and SOCS box containing 3 O ankyrin repeat and SOCS box protein 3 20121230 -9606 51131 PHF11 RP11-185C18.3 APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34 HGNC:17024|MIM:607796|Ensembl:ENSG00000136147|Vega:OTTHUMG00000016916 13 13q14.2 PHD finger protein 11 protein-coding PHF11 PHD finger protein 11 O BRCA1 C-terminus-associated protein|IgE responsiveness (atopic)|NY-REN-34 antigen|renal carcinoma antigen NY-REN-34 20121230 -9606 51132 RLIM CTD-2530H13.3 NY-REN-43|RNF12 HGNC:13429|MIM:300379|Ensembl:ENSG00000131263|HPRD:02304|Vega:OTTHUMG00000021859 X Xq13-q21 ring finger protein, LIM domain interacting protein-coding RLIM ring finger protein, LIM domain interacting O E3 ubiquitin-protein ligase RLIM|E3 ubiquitin-protein ligase RNF12|LIM domain-interacting RING finger protein|R-LIM|RING finger LIM domain-binding protein|renal carcinoma antigen NY-REN-43|ring finger protein 12|ring zinc finger LIM domain binding protein|ring zinc finger protein NY-REN-43antigen 20121230 -9606 51133 KCTD3 RP11-5F19.1 NY-REN-45 HGNC:21305|MIM:613272|Ensembl:ENSG00000136636|HPRD:13766|Vega:OTTHUMG00000037019 1 1q41 potassium channel tetramerisation domain containing 3 protein-coding KCTD3 potassium channel tetramerisation domain containing 3 O BTB/POZ domain-containing protein KCTD3|NY-REN-45 antigen|renal carcinoma antigen NY-REN-45 20121230 -9606 51134 CCDC41 - NY-REN-58 HGNC:17966|Ensembl:ENSG00000173588|HPRD:14869|Vega:OTTHUMG00000170242 12 12q22 coiled-coil domain containing 41 protein-coding CCDC41 coiled-coil domain containing 41 O NY-REN-58 antigen|coiled-coil domain-containing protein 41|renal carcinoma antigen NY-REN-58 20121230 -9606 51135 IRAK4 - IPD1|IRAK-4|NY-REN-64|REN64 HGNC:17967|MIM:606883|Ensembl:ENSG00000198001|HPRD:06051|Vega:OTTHUMG00000169425 12 12q12 interleukin-1 receptor-associated kinase 4 protein-coding IRAK4 interleukin-1 receptor-associated kinase 4 O renal carcinoma antigen NY-REN-64 20121230 -9606 51136 RNFT1 PTD016 - HGNC:30206|Ensembl:ENSG00000189050|HPRD:17925|Vega:OTTHUMG00000148658 17 17q23.1 ring finger protein, transmembrane 1 protein-coding RNFT1 ring finger protein, transmembrane 1 O RING finger and transmembrane domain-containing protein 1 20121230 -9606 51138 COPS4 - CSN4 HGNC:16702|Ensembl:ENSG00000138663|HPRD:09888|Vega:OTTHUMG00000130298 4 4q21.22 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) protein-coding COPS4 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) O COP9 signalosome complex subunit 4|JAB1-containing signalosome subunit 4|SGN4|signalosome subunit 4 20121230 -9606 51141 INSIG2 - - HGNC:20452|MIM:608660|Ensembl:ENSG00000125629|HPRD:16361|Vega:OTTHUMG00000058518 2 2q14.2 insulin induced gene 2 protein-coding INSIG2 insulin induced gene 2 O INSIG-2|INSIG2 membrane protein|insulin induced protein 2|insulin-induced gene 2 protein 20121230 -9606 51142 CHCHD2 AAG10 C7orf17 HGNC:21645|Ensembl:ENSG00000106153|HPRD:09879|Vega:OTTHUMG00000129429 7 7p11.2 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 O 16.7kD protein|HCV NS2 trans-regulated protein|NS2TP|aging-associated gene 10 protein|coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial 20121230 -9606 51143 DYNC1LI1 - DNCLI1|LIC1 HGNC:18745|Ensembl:ENSG00000144635|HPRD:10917|Vega:OTTHUMG00000130750 3 3p22.3 dynein, cytoplasmic 1, light intermediate chain 1 protein-coding DYNC1LI1 dynein, cytoplasmic 1, light intermediate chain 1 O DLC-A|cytoplasmic dynein 1 light intermediate chain 1|dynein light chain A|dynein light chain-A|dynein light intermediate chain 1, cytosolic|dynein, cytoplasmic, light intermediate polypeptide 1 20121230 -9606 51144 HSD17B12 - KAR|SDR12C1 HGNC:18646|MIM:609574|Ensembl:ENSG00000149084|HPRD:09989|Vega:OTTHUMG00000166403 11 11p11.2 hydroxysteroid (17-beta) dehydrogenase 12 protein-coding HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 O 17-beta-HSD 12|17-beta-hydroxysteroid dehydrogenase 12|17beta-HSD type 12|3-ketoacyl-CoA reductase|estradiol 17-beta-dehydrogenase 12|short chain dehydrogenase/reductase family 12C, member 1|steroid dehydrogenase homolog 20121230 -9606 51145 LOC51145 - - - 9 9q33.3 erythrocyte transmembrane protein unknown - - - - 20121230 -9606 51146 A4GNT - alpha4GnT HGNC:17968|Ensembl:ENSG00000118017|HPRD:12390|Vega:OTTHUMG00000159820 3 3p14.3 alpha-1,4-N-acetylglucosaminyltransferase protein-coding A4GNT alpha-1,4-N-acetylglucosaminyltransferase O - 20121230 -9606 51147 ING4 My036 my036|p29ING4 HGNC:19423|MIM:608524|Ensembl:ENSG00000111653|HPRD:09774|Vega:OTTHUMG00000141274 12 12p13.31 inhibitor of growth family, member 4 protein-coding ING4 inhibitor of growth family, member 4 O brain my036 protein|candidate tumor suppressor p33 ING1 homolog|inhibitor of growth protein 4 20121230 -9606 51148 CERCAM RP11-339B21.2 CEECAM1|GLT25D3 HGNC:23723|Ensembl:ENSG00000167123|HPRD:16705|Vega:OTTHUMG00000020747 9 9q34.11 cerebral endothelial cell adhesion molecule protein-coding CERCAM cerebral endothelial cell adhesion molecule O cerebral cell adhesion molecule|cerebral endothelial cell adhesion molecule 1|glycosyltransferase 25 domain containing 3|glycosyltransferase 25 family member 3 20121230 -9606 51149 C5orf45 - - HGNC:30817|Ensembl:ENSG00000161010|HPRD:17420|Vega:OTTHUMG00000163490 5 5q35.3 chromosome 5 open reading frame 45 protein-coding C5orf45 chromosome 5 open reading frame 45 O UPF0544 protein C5orf45 20121230 -9606 51150 SDF4 RP5-902P8.6 Cab45|SDF-4 HGNC:24188|MIM:614282|Ensembl:ENSG00000078808|HPRD:13113|Vega:OTTHUMG00000001812 1 1p36.33 stromal cell derived factor 4 protein-coding SDF4 stromal cell derived factor 4 O 45 kDa calcium-binding protein 20121230 -9606 51151 SLC45A2 - 1A1|AIM1|MATP|SHEP5 HGNC:16472|MIM:606202|Ensembl:ENSG00000164175|HPRD:05865|Vega:OTTHUMG00000090719 5 5p13.2 solute carrier family 45, member 2 protein-coding SLC45A2 solute carrier family 45, member 2 O melanoma antigen AIM1|membrane associated transporter|membrane-associated transporter protein|protein AIM-1|underwhite 20121230 -9606 51152 LINC00328 - NCRNA00328|NCRNA00328A HGNC:42028 21 - long intergenic non-protein coding RNA 328 unknown LINC00328 long intergenic non-protein coding RNA 328 O - 20120508 -9606 51154 MRTO4 - C1orf33|MRT4|dJ657E11.4 HGNC:18477|Ensembl:ENSG00000053372|HPRD:12725|Vega:OTTHUMG00000002496 1 1p36.13 mRNA turnover 4 homolog (S. cerevisiae) protein-coding MRTO4 mRNA turnover 4 homolog (S. cerevisiae) O 60S acidic ribosomal protein PO|MRT4, mRNA turnover 4, homolog|mRNA turnover protein 4 homolog 20121230 -9606 51155 HN1 - ARM2|HN1A HGNC:14569|Ensembl:ENSG00000189159|HPRD:13665|Vega:OTTHUMG00000154521 17 17q25.1 hematological and neurological expressed 1 protein-coding HN1 hematological and neurological expressed 1 O androgen-regulated protein 2|hematological and neurological expressed 1 protein 20121230 -9606 51156 SERPINA10 UNQ707/PRO1358 PZI|ZPI HGNC:15996|MIM:605271|Ensembl:ENSG00000140093|HPRD:09245|Vega:OTTHUMG00000171345 14 14q32.13 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 protein-coding SERPINA10 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 O PZ-dependent protease inhibitor|protein Z-dependent protease inhibitor|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10|serpin A10 20121230 -9606 51157 ZNF580 - - HGNC:29473|Ensembl:ENSG00000213015|HPRD:18353|Vega:OTTHUMG00000180868 19 19q13.42 zinc finger protein 580 protein-coding ZNF580 zinc finger protein 580 O LDL induced EC protein|LDL-induced EC protein 20121230 -9606 51160 VPS28 - - HGNC:18178|MIM:611952|Ensembl:ENSG00000160948|HPRD:11675|Vega:OTTHUMG00000165209 8 8q24.3 vacuolar protein sorting 28 homolog (S. cerevisiae) protein-coding VPS28 vacuolar protein sorting 28 homolog (S. cerevisiae) O ESCRT-I complex subunit VPS28|H-Vps28|vacuolar protein sorting-associated protein 28 homolog|yeast class E protein Vps28p homolog 20121230 -9606 51161 C3orf18 - G20 HGNC:24837|Ensembl:ENSG00000088543|HPRD:16654|Vega:OTTHUMG00000156854 3 3p21.3 chromosome 3 open reading frame 18 protein-coding C3orf18 chromosome 3 open reading frame 18 O uncharacterized protein C3orf18 20121230 -9606 51162 EGFL7 UNQ187/PRO1449 NEU1|RP11-251M1.2|VE-STATIN|ZNEU1 HGNC:20594|MIM:608582|Ensembl:ENSG00000172889|HPRD:16351|Vega:OTTHUMG00000020938 9 9q34.3 EGF-like-domain, multiple 7 protein-coding EGFL7 EGF-like-domain, multiple 7 O EGF-like protein 7|NOTCH4-like protein|epidermal growth factor-like protein 7|multiple EGF-like domains protein 7|multiple epidermal growth factor-like domains protein 7|vascular endothelial statin 20121230 -9606 51163 DBR1 - - HGNC:15594|MIM:607024|Ensembl:ENSG00000138231|HPRD:07384|Vega:OTTHUMG00000159824 3 3q22.3 debranching enzyme homolog 1 (S. cerevisiae) protein-coding DBR1 debranching enzyme homolog 1 (S. cerevisiae) O RNA lariat debranching enzyme|lariat debranching enzyme 20121230 -9606 51164 DCTN4 - DYN4|P62 HGNC:15518|MIM:614758|Ensembl:ENSG00000132912|HPRD:13126|Vega:OTTHUMG00000130079 5 5q31-q32 dynactin 4 (p62) protein-coding DCTN4 dynactin 4 (p62) O dynactin p62 subunit|dynactin subunit 4|dynactin subunit p62 20121230 -9606 51166 AADAT - KAT2|KATII HGNC:17929|MIM:611754|Ensembl:ENSG00000109576|HPRD:12392|Vega:OTTHUMG00000160912 4 4q33 aminoadipate aminotransferase protein-coding AADAT aminoadipate aminotransferase O 2-aminoadipate aminotransferase|2-aminoadipate transaminase|KAT/AadAT|L kynurenine/alpha aminoadipate aminotransferase|alpha-aminoadipate aminotransferase|kynurenine aminotransferase II|kynurenine--oxoglutarate aminotransferase II|kynurenine--oxoglutarate transaminase 2|kynurenine--oxoglutarate transaminase II|kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 20121230 -9606 51167 CYB5R4 - NCB5OR|RP4-676J13.1|cb5/cb5R|dJ676J13.1 HGNC:20147|MIM:608343|Ensembl:ENSG00000065615|HPRD:12218|Vega:OTTHUMG00000015118 6 6pter-q22.33 cytochrome b5 reductase 4 protein-coding CYB5R4 cytochrome b5 reductase 4 O N-terminal cytochrome b5 and cytochrome b5 oxidoreductase domain-containing protein|NADPH cytochrome B5 oxidoreductase|cytochrome b-type NAD(P)H oxidoreductase|flavohemoprotein b5+b5R|flavohemoprotein b5/b5R 20121230 -9606 51168 MYO15A - DFNB3|MYO15 HGNC:7594|MIM:602666|Ensembl:ENSG00000091536|HPRD:04049|Vega:OTTHUMG00000059390 17 17p11.2 myosin XVA protein-coding MYO15A myosin XVA O myosin-XV|unconventional myosin-15|unconventional myosin-XV 20121230 -9606 51170 HSD17B11 PSEC0029 17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 HGNC:22960|MIM:612831|Ensembl:ENSG00000198189|HPRD:10881|Vega:OTTHUMG00000130594 4 4q22.1 hydroxysteroid (17-beta) dehydrogenase 11 protein-coding HSD17B11 hydroxysteroid (17-beta) dehydrogenase 11 O 17-BETA-HSD11|17-BETA-HSDXI|17-beta-HSD 11|17-beta-HSD XI|17-beta-hydroxysteroid dehydrogenase 11|17-beta-hydroxysteroid dehydrogenase XI|17-beta-hydroxysteroid dehydrogenase type XI|CTCL tumor antigen HD-CL-03|CTCL-associated antigen HD-CL-03|T-cell lymphoma-associated antigen HD-CL-03|cutaneous T-cell lymphoma-associated antigen HD-CL-03|dehydrogenase/reductase (SDR family) member 8|dehydrogenase/reductase SDR family member 8|estradiol 17-beta-dehydrogenase 11|retinal short-chain dehydrogenase/reductase 2|short chain dehydrogenase/reductase family 16C, member 2 20121230 -9606 51171 HSD17B14 UNQ502/PRO474 DHRS10|SDR47C1|retSDR3 HGNC:23238|MIM:612832|Ensembl:ENSG00000087076|HPRD:16801 19 19q13.33 hydroxysteroid (17-beta) dehydrogenase 14 protein-coding HSD17B14 hydroxysteroid (17-beta) dehydrogenase 14 O 17-beta-HSD 14|17-beta-hydroxysteroid dehydrogenase 14|17-beta-hydroxysteroid dehydrogenase DHRS10|dehydrogenase/reductase (SDR family) member 10|dehydrogenase/reductase SDR family member 10|retinal short-chain dehydrogenase/reductase 3|retinal short-chain dehydrogenase/reductase retSDR3|short chain dehydrogenase/reductase family 47C, member 1 20121230 -9606 51172 NAGPA - APAA|UCE HGNC:17378|MIM:607985|Ensembl:ENSG00000103174|HPRD:12145|Vega:OTTHUMG00000090515 16 16p13.3 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase O alpha-N-acetylglucosaminyl phosphodiesterase|lysosomal alpha-N-acetylglucosaminidase|mannose 6-phosphate-uncovering enzyme|phosphodiester alpha-GlcNAcase 20121230 -9606 51174 TUBD1 - TUBD HGNC:16811|MIM:607344|Ensembl:ENSG00000108423|HPRD:06297|Vega:OTTHUMG00000179885 17 17q23.1 tubulin, delta 1 protein-coding TUBD1 tubulin, delta 1 O delta-tubulin|tubulin delta chain 20121230 -9606 51175 TUBE1 RP1-142L7.1 TUBE|dJ142L7.2 HGNC:20775|MIM:607345|Ensembl:ENSG00000074935|HPRD:06298|Vega:OTTHUMG00000015382 6 6q21 tubulin, epsilon 1 protein-coding TUBE1 tubulin, epsilon 1 O epsilon-tubulin|tubulin epsilon chain 20121230 -9606 51176 LEF1 - LEF-1|TCF10|TCF1ALPHA|TCF7L3 HGNC:6551|MIM:153245|Ensembl:ENSG00000138795|HPRD:01075|Vega:OTTHUMG00000131809 4 4q23-q25 lymphoid enhancer-binding factor 1 protein-coding LEF1 lymphoid enhancer-binding factor 1 O T cell-specific transcription factor 1-alpha|TCF1-alpha 20121230 -9606 51177 PLEKHO1 RP11-458I7.3 CKIP-1|OC120 HGNC:24310|MIM:608335|Ensembl:ENSG00000023902|HPRD:12217|Vega:OTTHUMG00000012510 1 1q21.2 pleckstrin homology domain containing, family O member 1 protein-coding PLEKHO1 pleckstrin homology domain containing, family O member 1 O 2810052M02Rik|C-Jun-binding protein|CK2 interacting protein 1; HQ0024c protein|CK2-interacting protein 1|JBP|OC120|PH domain-containing family O member 1|casein kinase 2-interacting protein 1|osteoclast maturation-associated gene 120 protein|pleckstrin homology domain-containing family O member 1 20121230 -9606 51179 HAO2 RP5-871G17.1 GIG16|HAOX2 HGNC:4810|MIM:605176|Ensembl:ENSG00000116882|HPRD:05532|Vega:OTTHUMG00000012410 1 1p13.3-p13.1 hydroxyacid oxidase 2 (long chain) protein-coding HAO2 hydroxyacid oxidase 2 (long chain) O (S)-2-hydroxy-acid oxidase, peroxisomal|cell growth-inhibiting gene 16 protein|glycolate oxidase|hydroxyacid oxidase 2|long chain alpha-hydroxy acid oxidase|long-chain L-2-hydroxy acid oxidase 20121230 -9606 51181 DCXR - DCR|HCR2|HCRII|KIDCR|P34H|SDR20C1|XR HGNC:18985|MIM:608347|Ensembl:ENSG00000169738|HPRD:16320|Vega:OTTHUMG00000178483 17 17q25.3 dicarbonyl/L-xylulose reductase protein-coding DCXR dicarbonyl/L-xylulose reductase O L-xylulose reductase|carbonyl reductase 2|carbonyl reductase II|kidney dicarbonyl reductase|short chain dehydrogenase/reductase family 20C, member 1|sperm surface protein P34H 20121230 -9606 51182 HSPA14 - HSP70-4|HSP70L1 HGNC:29526|MIM:610369|Ensembl:ENSG00000187522|HPRD:07021|Vega:OTTHUMG00000017712 10 10p13 heat shock 70kDa protein 14 protein-coding HSPA14 heat shock 70kDa protein 14 O HSP70-like protein 1|heat shock 70 kDa protein 14|heat shock protein HSP60|heat shock protein hsp70-related protein 20121230 -9606 51184 GPN3 AD-009 ATPBD1C HGNC:30186|Ensembl:ENSG00000111231|HPRD:17498|Vega:OTTHUMG00000169524 12 12q24.11 GPN-loop GTPase 3 protein-coding GPN3 GPN-loop GTPase 3 O ATP binding domain 1 family, member C|ATP-binding domain 1 family member C|protein x 0004 20121230 -9606 51185 CRBN AD-006 MRT2|MRT2A HGNC:30185|MIM:609262|Ensembl:ENSG00000113851|HPRD:16750|Vega:OTTHUMG00000090261 3 3p26.2 cereblon protein-coding CRBN cereblon O protein cereblon|protein x 0001 20121230 -9606 51186 WBP5 - TCEAL9 HGNC:30084|Ensembl:ENSG00000185222|HPRD:06621|Vega:OTTHUMG00000022097 X Xq22.2 WW domain binding protein 5 protein-coding WBP5 WW domain binding protein 5 O WBP-5|WW domain binding protein 1|WW domain-binding protein 5|pp21 homolog 20121230 -9606 51187 RSL24D1 My024 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 HGNC:18479|MIM:613262|Ensembl:ENSG00000137876|HPRD:12665|Vega:OTTHUMG00000131957 15 15q21 ribosomal L24 domain containing 1 protein-coding RSL24D1 ribosomal L24 domain containing 1 O 60S ribosomal protein L30 isolog|homolog of yeast ribosomal like protein 24|my024 protein|probable ribosome biogenesis protein RLP24|ribosomal L24 domain-containing protein 1 20121230 -9606 51188 SS18L2 - KIAA-iso HGNC:15593|MIM:606473|Ensembl:ENSG00000008324|HPRD:09399|Vega:OTTHUMG00000131794 3 3p21 synovial sarcoma translocation gene on chromosome 18-like 2 protein-coding SS18L2 synovial sarcoma translocation gene on chromosome 18-like 2 O SS18-like protein 2|SYT homolog 2 20121230 -9606 51191 HERC5 - CEB1|CEBP1 HGNC:24368|MIM:608242|Ensembl:ENSG00000138646|HPRD:10502|Vega:OTTHUMG00000130953 4 4q22.1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5 O E3 ISG15--protein ligase HERC5|HECT domain and RCC1-like domain-containing protein 5|cyclin-E-binding protein 1|hect domain and RLD 5|probable E3 ubiquitin-protein ligase HERC5 20121230 -9606 51192 CKLF HSPC224 C32|CKLF1|CKLF2|CKLF3|CKLF4|UCK-1 HGNC:13253|Ensembl:ENSG00000217555|HPRD:16718|Vega:OTTHUMG00000137504 16 16q21 chemokine-like factor protein-coding CKLF chemokine-like factor O chemokine-like factor 1|chemokine-like factor 2|chemokine-like factor 3|chemokine-like factor 4|transmembrane proteolipid 20121230 -9606 51193 ZNF639 - 6230400O18Rik|ANC-2H01|ANC_2H01|ZASC1 HGNC:30950|Ensembl:ENSG00000121864|HPRD:15882|Vega:OTTHUMG00000157439 3 3q26.33 zinc finger protein 639 protein-coding ZNF639 zinc finger protein 639 O zinc finger amplified in esophageal squamous cell carcinomas 1|zinc finger protein ANC_2H01|zinc finger protein ZASC1 20121230 -9606 51194 IPO11 - RanBP11 HGNC:20628|MIM:610889|Ensembl:ENSG00000086200|HPRD:10003|HPRD:18066|Vega:OTTHUMG00000154400 5 5q12.1 importin 11 protein-coding IPO11 importin 11 O Ran binding protein 11|imp11|importin-11|ran-binding protein 11 20121230 -9606 51195 RAPGEFL1 - Link-GEFII HGNC:17428|Ensembl:ENSG00000108352|HPRD:17954|Vega:OTTHUMG00000133325 17 17q21.1 Rap guanine nucleotide exchange factor (GEF)-like 1 protein-coding RAPGEFL1 Rap guanine nucleotide exchange factor (GEF)-like 1 O Link guanine nucleotide exchange factor II|RAP guanine-nucleotide-exchange factor (GEF)-like 1|link GEFII|rap guanine nucleotide exchange factor-like 1 20121230 -9606 51196 PLCE1 RP11-76P2.1 NPHS3|PLCE|PPLC HGNC:17175|MIM:608414|Ensembl:ENSG00000138193|HPRD:07087|Vega:OTTHUMG00000018789 10 10q23 phospholipase C, epsilon 1 protein-coding PLCE1 phospholipase C, epsilon 1 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1|PLC-epsilon-1|pancreas-enriched phospholipase C|phosphoinositide phospholipase C-epsilon-1|phosphoinositide-specific phospholipase C epsilon-1 20121230 -9606 51198 C9orf53 - bA149I2.3 HGNC:23831 9 9p21.3 chromosome 9 open reading frame 53 miscRNA C9orf53 chromosome 9 open reading frame 53 O - 20121230 -9606 51199 NIN - SCKL7 HGNC:14906|MIM:608684|Ensembl:ENSG00000100503|HPRD:09785|Vega:OTTHUMG00000029569 14 14q22.1 ninein (GSK3B interacting protein) protein-coding NIN ninein (GSK3B interacting protein) O glycogen synthase kinase 3 beta-interacting protein|hNinein|ninein|ninein centrosomal protein 20121230 -9606 51200 CPA4 tcag7.359 CPA3 HGNC:15740|MIM:607635|Ensembl:ENSG00000128510|HPRD:07405|Vega:OTTHUMG00000157825 7 7q32 carboxypeptidase A4 protein-coding CPA4 carboxypeptidase A4 O carboxypeptidase A3 20121230 -9606 51201 ZDHHC2 - DHHC2|ZNF372 HGNC:18469|Ensembl:ENSG00000104219|HPRD:15715|Vega:OTTHUMG00000163860 8 8p22 zinc finger, DHHC-type containing 2 protein-coding ZDHHC2 zinc finger, DHHC-type containing 2 O DHHC-2|palmitoyltransferase ZDHHC2|ream|rec|reduced expression associated with metastasis protein|reduced expression in cancer protein|zinc finger DHHC domain-containing protein 2|zinc finger protein 372|zinc finger, DHHC domain containing 2 20121230 -9606 51202 DDX47 - E4-DBP|HQ0256|MSTP162|RRP3 HGNC:18682|Ensembl:ENSG00000213782|HPRD:10863|Vega:OTTHUMG00000168709 12 12p13.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 O DEAD box polypeptide 47|DEAD box protein 47|E4-DEAD box protein|probable ATP-dependent RNA helicase DDX47 20121230 -9606 51203 NUSAP1 BM-037 ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL HGNC:18538|MIM:612818|Ensembl:ENSG00000137804|Vega:OTTHUMG00000172588 15 15q15.1 nucleolar and spindle associated protein 1 protein-coding NUSAP1 nucleolar and spindle associated protein 1 O nucleolar and spindle-associated protein 1|nucleolar protein ANKT 20121230 -9606 51204 TACO1 PRO0477 CCDC44 HGNC:24316|MIM:612958|Ensembl:ENSG00000136463|HPRD:17421|Vega:OTTHUMG00000178904 17 17q23.3 translational activator of mitochondrially encoded cytochrome c oxidase I protein-coding TACO1 translational activator of mitochondrially encoded cytochrome c oxidase I O clone HQ0477 PRO0477p|coiled-coil domain-containing protein 44|translational activator of cytochrome c oxidase 1 20121230 -9606 51205 ACP6 UNQ205/PRO231 ACPL1|LPAP|PACPL1 HGNC:29609|MIM:611471|Ensembl:ENSG00000162836|HPRD:16472|Vega:OTTHUMG00000014019 1 1q21 acid phosphatase 6, lysophosphatidic protein-coding ACP6 acid phosphatase 6, lysophosphatidic O acid phosphatase like 1|acid phosphatase-like protein 1|lysophosphatidic acid phosphatase type 6 20121230 -9606 51206 GP6 - BDPLT11|GPIV|GPVI HGNC:14388|MIM:605546|Ensembl:ENSG00000088053|HPRD:10406|Vega:OTTHUMG00000159709 19 19q13.4 glycoprotein VI (platelet) protein-coding GP6 glycoprotein VI (platelet) O glycoprotein 6|platelet collagen receptor|platelet glycoprotein VI 20121230 -9606 51207 DUSP13 RP11-487I5.6 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP HGNC:19681|MIM:613191|Ensembl:ENSG00000079393|HPRD:13251|Vega:OTTHUMG00000018516 10 10q22.2 dual specificity phosphatase 13 protein-coding DUSP13 dual specificity phosphatase 13 O branching-enzyme interacting DSP|branching-enzyme interacting dual-specificity protein phosphatase|dual specificity phosphatase SKRP4|dual specificity protein phosphatase 13|muscle-restricted DSP|testis- and skeletal-muscle-specific DSP 20121230 -9606 51208 CLDN18 UNQ778/PRO1572 SFTA5|SFTPJ HGNC:2039|MIM:609210|Ensembl:ENSG00000066405|HPRD:13066|Vega:OTTHUMG00000159762 3 3q22.3 claudin 18 protein-coding CLDN18 claudin 18 O claudin-18|surfactant associated 5|surfactant associated protein J|surfactant, pulmonary associated protein J 20121230 -9606 51209 RAB9B - RAB9L|Rab-9L HGNC:14090|MIM:300285|Ensembl:ENSG00000123570|HPRD:02237|Vega:OTTHUMG00000022112 X Xq22.1-q22.3 RAB9B, member RAS oncogene family protein-coding RAB9B RAB9B, member RAS oncogene family O RAB9-like protein|rab-9-like protein|ras-related protein Rab-9B 20121230 -9606 51213 LUZP4 RP1-237H22.1 CT-28|CT-8|CT28|HOM-TES-85 HGNC:24971|MIM:300616|Ensembl:ENSG00000102021|HPRD:06589|Vega:OTTHUMG00000022234 X Xq23 leucine zipper protein 4 protein-coding LUZP4 leucine zipper protein 4 O HOM-TES-85 tumor antigen|cancer/testis antigen 28|tumor antigen HOM-TES-85 20121230 -9606 51214 IGF2-AS hCG_1995804 IGF2-AS1|IGF2AS|PEG8 HGNC:14062|MIM:610146|HPRD:10000 11 11p15.5 IGF2 antisense RNA miscRNA IGF2-AS IGF2 antisense RNA O - 20121230 -9606 51218 GLRX5 - C14orf87|FLB4739|GRX5|PR01238|PRO1238 HGNC:20134|MIM:609588|Ensembl:ENSG00000182512|HPRD:12659|Vega:OTTHUMG00000171636 14 14q32.13 glutaredoxin 5 protein-coding GLRX5 glutaredoxin 5 O glutaredoxin 5 homolog|glutaredoxin-related protein 5, mitochondrial|monothiol glutaredoxin-5 20121230 -9606 51222 ZNF219 - ZFP219 HGNC:13011|MIM:605036|Ensembl:ENSG00000165804|HPRD:05435|Vega:OTTHUMG00000029647 14 14q11 zinc finger protein 219 protein-coding ZNF219 zinc finger protein 219 O - 20121230 -9606 51224 TCEB3B - ELOA2|HsT832|TCEB3L HGNC:30771|MIM:609522|Ensembl:ENSG00000206181|HPRD:18169|Vega:OTTHUMG00000132649 18 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) protein-coding TCEB3B transcription elongation factor B polypeptide 3B (elongin A2) O RNA polymerase II transcription factor SIII subunit A2|elongin-A2|transcription elongation factor (SIII) elongin A2 elongin A2 20121230 -9606 51225 ABI3 - NESH|SSH3BP3 HGNC:29859|MIM:606363|Ensembl:ENSG00000108798|HPRD:05900|Vega:OTTHUMG00000161306 17 17q21.3 ABI family, member 3 protein-coding ABI3 ABI family, member 3 O ABI gene family member 3|ABI gene family, member 3|new molecule including SH3 20121230 -9606 51226 COPZ2 - - HGNC:19356|Ensembl:ENSG00000005243|HPRD:16739|Vega:OTTHUMG00000178684 17 17q21.32 coatomer protein complex, subunit zeta 2 protein-coding COPZ2 coatomer protein complex, subunit zeta 2 O coatomer subunit zeta-2|nonclathrin coat protein zeta-COP|zeta-2 COP|zeta-2 coat protein|zeta-2-coat protein|zeta2-COP 20121230 -9606 51227 PIGP NPD010 DCRC|DCRC-S|DSCR5|DSRC HGNC:3046|MIM:605938|Ensembl:ENSG00000185808|HPRD:05806|Vega:OTTHUMG00000086653 21 21q22.2 phosphatidylinositol glycan anchor biosynthesis, class P protein-coding PIGP phosphatidylinositol glycan anchor biosynthesis, class P O Down syndrome critical region gene 5|Down syndrome critical region protein 5|Down syndrome critical region protein C|PIG-P|phosphatidylinositol N-acetylglucosaminyltransferase subunit P|phosphatidylinositol glycan, class P|phosphatidylinositol-glycan biosynthesis class P protein|phosphatidylinositol-n-acetylglucosaminyltranferase subunit 20121230 -9606 51228 GLTP - - HGNC:24867|MIM:608949|Ensembl:ENSG00000139433|HPRD:16409|Vega:OTTHUMG00000169278 12 12q24.11 glycolipid transfer protein protein-coding GLTP glycolipid transfer protein O truncated glycolipid transfer protein 20121230 -9606 51230 PHF20 RP5-1121G12.1 C20orf104|GLEA2|HCA58|NZF|TZP HGNC:16098|MIM:610335|Ensembl:ENSG00000025293|HPRD:08514|Vega:OTTHUMG00000032367 20 20q11.22-q11.23 PHD finger protein 20 protein-coding PHF20 PHD finger protein 20 O glioma-expressed antigen 2|hepatocellular carcinoma-associated antigen 58|novel zinc finger protein|transcription factor TZP 20121230 -9606 51231 VRK3 - - HGNC:18996|Ensembl:ENSG00000105053|HPRD:18289 19 19q13 vaccinia related kinase 3 protein-coding VRK3 vaccinia related kinase 3 O inactive serine/threonine-protein kinase VRK3|serine/threonine-protein kinase VRK3|serine/threonine-protein pseudokinase VRK3|vaccinia-related kinase 3 20121230 -9606 51232 CRIM1 UNQ1886/PRO4330 CRIM-1|S52 HGNC:2359|MIM:606189|Ensembl:ENSG00000150938|HPRD:08392|Vega:OTTHUMG00000099419 2 2p21 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) O cysteine-rich motor neuron 1 protein|cysteine-rich repeat-containing protein S52 20121230 -9606 51233 C22orf43 - - HGNC:28031|Ensembl:ENSG00000189269|HPRD:17422|Vega:OTTHUMG00000150710 22 22q11.2 chromosome 22 open reading frame 43 protein-coding C22orf43 chromosome 22 open reading frame 43 O putative uncharacterized protein C22orf43|uncharacterized protein C22orf43 20121230 -9606 51234 EMC4 HSPC184 PIG17|TMEM85 HGNC:28032|Ensembl:ENSG00000128463|HPRD:14233|Vega:OTTHUMG00000129411 15 15q14 ER membrane protein complex subunit 4 protein-coding EMC4 ER membrane protein complex subunit 4 O cell proliferation-inducing gene 17 protein|proliferation-inducing gene 17|transmembrane protein 85 20121230 -9606 51236 FAM203A - BRP16|C8orf30A HGNC:24161|Ensembl:ENSG00000235173|HPRD:17423|Vega:OTTHUMG00000165246 8 8q24.3 family with sequence similarity 203, member A protein-coding FAM203A family with sequence similarity 203, member A O brain protein 16|protein FAM203A 20121230 -9606 51237 MZB1 HSPC190 MEDA-7|PACAP|pERp1 HGNC:30125|MIM:609447|Ensembl:ENSG00000170476|HPRD:17815|Vega:OTTHUMG00000163390 5 5q31.2 marginal zone B and B1 cell-specific protein protein-coding MZB1 marginal zone B and B1 cell-specific protein O HSPC190|caspase-2 binding protein|mesenteric oestrogen-dependent adipose gene- 7|plasma cell-induced ER protein 1|plasma cell-induced resident ER protein|plasma cell-induced resident endoplasmic reticulum protein|proapoptotic caspase adapter protein|proapoptotic caspase adaptor protein 20121230 -9606 51239 ANKRD39 HSPC200 - HGNC:28640|Ensembl:ENSG00000213337|HPRD:14614|Vega:OTTHUMG00000130530 2 2q11.2 ankyrin repeat domain 39 protein-coding ANKRD39 ankyrin repeat domain 39 O ankyrin repeat domain-containing protein 39 20121230 -9606 51241 COX16 HSPC203 C14orf112 HGNC:20213|Ensembl:ENSG00000133983|HPRD:16591|Vega:OTTHUMG00000171238 14 14q24.2 COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) protein-coding COX16 COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) O cytochrome c oxidase assembly factor|cytochrome c oxidase assembly protein COX16 homolog, mitochondrial 20121230 -9606 51244 CCDC174 - C3orf19 HGNC:28033|Ensembl:ENSG00000154781|HPRD:12820|Vega:OTTHUMG00000129837 3 3p25.1 coiled-coil domain containing 174 protein-coding CCDC174 coiled-coil domain containing 174 O uncharacterized protein C3orf19 20121230 -9606 51246 SHISA5 PSEC0133 SCOTIN|hShisa5 HGNC:30376|MIM:607290|Ensembl:ENSG00000164054|HPRD:06290|Vega:OTTHUMG00000133529 3 3p21.31 shisa homolog 5 (Xenopus laevis) protein-coding SHISA5 shisa homolog 5 (Xenopus laevis) O protein shisa-5|putative NF-kappa-B-activating protein 120 20121230 -9606 51247 PAIP2 HSPC218 PAIP2A HGNC:17970|MIM:605604|Ensembl:ENSG00000120727|HPRD:05726|Vega:OTTHUMG00000129227 5 5q31.2 poly(A) binding protein interacting protein 2 protein-coding PAIP2 poly(A) binding protein interacting protein 2 O PABC1-interacting protein 2|PABP-interacting protein 2|PAIP-2|poly(A)-binding protein-interacting protein 2|polyA-binding protein-interacting protein 2|polyadenylate-binding protein-interacting protein 2 20121230 -9606 51248 PDZD11 RP13-26D14.3 AIPP1|PDZK11|PISP HGNC:28034|MIM:300632|Ensembl:ENSG00000120509|HPRD:06622|Vega:OTTHUMG00000021771 X Xq13.1 PDZ domain containing 11 protein-coding PDZD11 PDZ domain containing 11 O ATPase-interacting PDZ protein|PDZ domain-containing protein 11 20121230 -9606 51249 TMEM69 HSPC229 C1orf154|RP11-767N6.4 HGNC:28035|Ensembl:ENSG00000159596|HPRD:14234|Vega:OTTHUMG00000040993 1 1p34.1 transmembrane protein 69 protein-coding TMEM69 transmembrane protein 69 O - 20121230 -9606 51250 C6orf203 HSPC230 PRED31|RP11-59I9.1 HGNC:17971|Ensembl:ENSG00000130349|HPRD:12873|Vega:OTTHUMG00000015307 6 6q21 chromosome 6 open reading frame 203 protein-coding C6orf203 chromosome 6 open reading frame 203 O HSPC230|uncharacterized protein C6orf203 20121230 -9606 51251 NT5C3 HSPC233 P5'N-1|P5N-1|PN-I|PSN1|UMPH|UMPH1|cN-III|p36 HGNC:17820|MIM:606224|Ensembl:ENSG00000122643|HPRD:05871|Vega:OTTHUMG00000152983 7 7p14.3 5'-nucleotidase, cytosolic III protein-coding NT5C3 5'-nucleotidase, cytosolic III O cytosolic 5'-nucleotidase 3|pyrimidine 5'-nucleotidase 1|uridine 5'-monophosphate hydrolase 1 20121230 -9606 51252 FAM178B HSPC234 - HGNC:28036|Ensembl:ENSG00000168754|HPRD:14235|Vega:OTTHUMG00000155257 2 2q11.2 family with sequence similarity 178, member B protein-coding FAM178B family with sequence similarity 178, member B O protein FAM178B 20121230 -9606 51253 MRPL37 HSPC235 L37mt|MRP-L2|MRP-L37|MRPL2|RPML2 HGNC:14034|MIM:611843|Ensembl:ENSG00000116221|HPRD:14757|Vega:OTTHUMG00000008118 1 1p32.1 mitochondrial ribosomal protein L37 protein-coding MRPL37 mitochondrial ribosomal protein L37 O 39S ribosomal protein L2, mitochondrial|39S ribosomal protein L37, mitochondrial|L2mt|ribosomal protein, mitochondrial, L2 20121230 -9606 51255 RNF181 HSPC238 - HGNC:28037|MIM:612490|Ensembl:ENSG00000168894|HPRD:14236|Vega:OTTHUMG00000130182 2 2p11.2 ring finger protein 181 protein-coding RNF181 ring finger protein 181 O E3 ubiquitin-protein ligase RNF181 20121230 -9606 51256 TBC1D7 HSPC239 PIG51|TBC7|dJ257A7.3 HGNC:21066|MIM:612655|Ensembl:ENSG00000145979|HPRD:18165|Vega:OTTHUMG00000014272 6 6p24.1 TBC1 domain family, member 7 protein-coding TBC1D7 TBC1 domain family, member 7 O TBC1 domain family member 7|cell migration-inducing protein 23 20121230 -9606 51257 MARCH2 HSPC240 MARCH-II|RNF172 HGNC:28038|MIM:613332|Ensembl:ENSG00000099785|HPRD:14361 19 19p13.2 membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase protein-coding MARCH2 membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MARCH2|RING finger protein 172|membrane-associated RING finger protein 2|membrane-associated RING-CH protein II 20121230 -9606 51258 MRPL51 CDA09 HSPC241|MRP64|bMRP64 HGNC:14044|MIM:611855|Ensembl:ENSG00000111639|HPRD:14769|Vega:OTTHUMG00000168512 12 12p13.3-p13.1 mitochondrial ribosomal protein L51 protein-coding MRPL51 mitochondrial ribosomal protein L51 O 39S ribosomal protein L51, mitochondrial|L51mt|MRP-L51|bMRP-64|mitochondrial ribosomal protein 64|mitochondrial ribosomal protein bMRP64 20121230 -9606 51259 TMEM216 HSPC244 - HGNC:25018|MIM:613277|Ensembl:ENSG00000187049|HPRD:14439|Vega:OTTHUMG00000168146 11 11q13.1 transmembrane protein 216 protein-coding TMEM216 transmembrane protein 216 O - 20121230 -9606 51260 PBDC1 - CXorf26 HGNC:28790|Ensembl:ENSG00000102390|HPRD:06659|Vega:OTTHUMG00000021876 X Xq13.3 polysaccharide biosynthesis domain containing 1 protein-coding PBDC1 polysaccharide biosynthesis domain containing 1 O 2610029G23Rik|UPF0368 protein Cxorf26 20121230 -9606 51263 MRPL30 HSPC249 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 HGNC:14036|MIM:611838|Ensembl:ENSG00000185414|Ensembl:ENSG00000241962|HPRD:14751|Vega:OTTHUMG00000130642 2 2q11.2 mitochondrial ribosomal protein L30 protein-coding MRPL30 mitochondrial ribosomal protein L30 O 39S ribosomal protein L28, mitochondrial|39S ribosomal protein L30, mitochondrial 20121230 -9606 51264 MRPL27 HSPC250 L27mt HGNC:14483|MIM:611837|Ensembl:ENSG00000108826|HPRD:14750|Vega:OTTHUMG00000162062 17 17q21.3-q22 mitochondrial ribosomal protein L27 protein-coding MRPL27 mitochondrial ribosomal protein L27 O 39S ribosomal protein L27, mitochondrial|MRP-L27 20121230 -9606 51265 CDKL3 - NKIAMRE HGNC:15483|MIM:608459|Ensembl:ENSG00000006837|Vega:OTTHUMG00000164185 5 5q31 cyclin-dependent kinase-like 3 protein-coding CDKL3 cyclin-dependent kinase-like 3 O serine-threonine protein kinase NKIAMRE|serine/threonine-protein kinase NKIAMRE 20121230 -9606 51266 CLEC1B UNQ721/PRO1384 1810061I13Rik|CLEC2|CLEC2B|PRO1384|QDED721 HGNC:24356|MIM:606783|Ensembl:ENSG00000165682|HPRD:09490|Vega:OTTHUMG00000168502 12 12p13.2 C-type lectin domain family 1, member B protein-coding CLEC1B C-type lectin domain family 1, member B O C-type lectin domain family 1 member B|C-type lectin-like receptor 2|C-type lectin-like receptor-2|CLEC-2 20121230 -9606 51267 CLEC1A UNQ569/PRO1131 CLEC1 HGNC:24355|MIM:606782|Ensembl:ENSG00000150048|HPRD:09489|Vega:OTTHUMG00000168504 12 12p13.2 C-type lectin domain family 1, member A protein-coding CLEC1A C-type lectin domain family 1, member A O C-type lectin domain family 1 member A|C-type lectin-like receptor-1|CLEC-1 20121230 -9606 51268 PIPOX - LPIPOX HGNC:17804|Ensembl:ENSG00000179761|HPRD:17853|Vega:OTTHUMG00000132679 17 17q11.2 pipecolic acid oxidase protein-coding PIPOX pipecolic acid oxidase O L-pipecolate oxidase|L-pipecolic acid oxidase|PSO|peroxisomal sarcosine oxidase 20121230 -9606 51270 TFDP3 RP3-358H7.2 CT30|DP4|HCA661 HGNC:24603|MIM:300772|Ensembl:ENSG00000183434|HPRD:06623|Vega:OTTHUMG00000022433 X Xq26.2 transcription factor Dp family, member 3 protein-coding TFDP3 transcription factor Dp family, member 3 O E2F-like protein|cancer/testis antigen 30|hepatocellular carcinoma-associated antigen 661|transcription factor Dp family member 3 20121230 -9606 51271 UBAP1 RP11-571F15.1 NAG20|UAP|UBAP|UBAP-1 HGNC:12461|MIM:609787|Ensembl:ENSG00000165006|HPRD:15597|Vega:OTTHUMG00000000430 9 9p13.3 ubiquitin associated protein 1 protein-coding UBAP1 ubiquitin associated protein 1 O nasopharyngeal carcinoma-associated gene 20 protein|ubiquitin-associated protein 1 20121230 -9606 51272 BET1L - BET1L1|GOLIM3|GS15|HSPC197 HGNC:19348|Ensembl:ENSG00000177951|HPRD:16547|Vega:OTTHUMG00000119071 11 11p15.5 blocked early in transport 1 homolog (S. cerevisiae)-like protein-coding BET1L blocked early in transport 1 homolog (S. cerevisiae)-like O BET1-like protein|GOS-15|golgi SNARE 15 kDa protein|golgi SNARE with a size of 15 kDa|golgi integral membrane protein 3|vesicle transport protein GOS15 20121230 -9606 51274 KLF3 - BKLF HGNC:16516|MIM:609392|Ensembl:ENSG00000109787|HPRD:13920|Vega:OTTHUMG00000097821 4 4p14 Kruppel-like factor 3 (basic) protein-coding KLF3 Kruppel-like factor 3 (basic) O CACCC-box-binding protein BKLF|Krueppel-like factor 3|TEF-2|basic Kruppel-like factor|basic krueppel-like factor|basic kruppel like factor|transcript ch138 20121230 -9606 51275 MAPKAPK5-AS1 - C12orf47 HGNC:24091|HPRD:16946 12 12q24.12 MAPKAPK5 antisense RNA 1 miscRNA MAPKAPK5-AS1 MAPKAPK5 antisense RNA 1 O - 20121230 -9606 51276 ZNF571 HSPC059 - HGNC:25000|Ensembl:ENSG00000180479|HPRD:15850|Vega:OTTHUMG00000182016 19 19q13.12 zinc finger protein 571 protein-coding ZNF571 zinc finger protein 571 O - 20121230 -9606 51277 DNAJC27 - RBJ|RabJS HGNC:30290|MIM:613527|Ensembl:ENSG00000115137|HPRD:15221|Vega:OTTHUMG00000125524 2 2p23.3 DnaJ (Hsp40) homolog, subfamily C, member 27 protein-coding DNAJC27 DnaJ (Hsp40) homolog, subfamily C, member 27 O Ras-associated protein Rap1|dnaJ homolog subfamily C member 27|rab and DnaJ domain-containing protein 20121230 -9606 51278 IER5 PP4583 SBBI48 HGNC:5393|MIM:607177|Ensembl:ENSG00000162783|HPRD:06210|Vega:OTTHUMG00000035178 1 1q25.3 immediate early response 5 protein-coding IER5 immediate early response 5 O immediate early response gene 5 protein 20121230 -9606 51279 C1RL - C1RL1|C1RLP|C1r-LP|CLSPa HGNC:21265|MIM:608974|Ensembl:ENSG00000139178|HPRD:07093|Vega:OTTHUMG00000168144 12 12p13.31 complement component 1, r subcomponent-like protein-coding C1RL complement component 1, r subcomponent-like O C1r-like protein|C1r-like serine protease analog protein|complement C1r subcomponent-like protein|complement C1r-like proteinase 20121230 -9606 51280 GOLM1 RP11-379P1.3 C9orf155|GOLPH2|GP73|PSEC0257|bA379P1.3 HGNC:15451|MIM:606804|Ensembl:ENSG00000135052|HPRD:08428|Vega:OTTHUMG00000020130 9 9q21.33 golgi membrane protein 1 protein-coding GOLM1 golgi membrane protein 1 O Golgi membrane protein 1|golgi membrane protein GP73|golgi phosphoprotein 2|golgi protein, 73-kD 20121230 -9606 51281 ANKMY1 - ZMYND13 HGNC:20987|Ensembl:ENSG00000144504|HPRD:10646|Vega:OTTHUMG00000133355 2 2q37.3 ankyrin repeat and MYND domain containing 1 protein-coding ANKMY1 ankyrin repeat and MYND domain containing 1 O ankyrin repeat and MYND domain-containing protein 1|testis specific ankyrin-like protein 1|testis-specific ankyrin-like protein 1|zinc finger MYND domain-containing protein 13 20121230 -9606 51282 SCAND1 - RAZ1|SDP1 HGNC:10566|MIM:610416|HPRD:15298 20 20q11.1-q11.23 SCAN domain containing 1 protein-coding SCAND1 SCAN domain containing 1 O SCAN domain-containing 1|SCAN domain-containing protein 1|SCAN-related protein RAZ1 20121230 -9606 51283 BFAR - BAR|RNF47 HGNC:17613|Ensembl:ENSG00000103429|HPRD:16548|Vega:OTTHUMG00000129848 16 16p13.12 bifunctional apoptosis regulator protein-coding BFAR bifunctional apoptosis regulator O RING finger protein 47|bifunctional apoptosis inhibitor 20121230 -9606 51284 TLR7 UNQ248/PRO285 - HGNC:15631|MIM:300365|Ensembl:ENSG00000196664|HPRD:02295|Vega:OTTHUMG00000021137 X Xp22.3 toll-like receptor 7 protein-coding TLR7 toll-like receptor 7 O - 20121230 -9606 51285 RASL12 - RIS HGNC:30289|Ensembl:ENSG00000103710|HPRD:15217|Vega:OTTHUMG00000133115 15 15q11.2-q22.33 RAS-like, family 12 protein-coding RASL12 RAS-like, family 12 O Ras family member Ris|ras-like protein Ris|ras-like protein family member 12 20121230 -9606 51286 CEND1 - BM88 HGNC:24153|MIM:608213|Ensembl:ENSG00000184524|HPRD:16300|Vega:OTTHUMG00000133308 11 11p15.5 cell cycle exit and neuronal differentiation 1 protein-coding CEND1 cell cycle exit and neuronal differentiation 1 O BM88 antigen|cell cycle exit and neuronal differentiation protein 1 20121230 -9606 51287 COA4 - CHCHD8|CMC3|E2IG2 HGNC:24604|MIM:608016|Ensembl:ENSG00000181924|HPRD:06421|Vega:OTTHUMG00000168061 11 11q13.4 cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) protein-coding COA4 cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) O E2-induced gene 2 protein|coiled-coil-helix-coiled-coil-helix domain containing 8|coiled-coil-helix-coiled-coil-helix domain-containing protein 8 20121230 -9606 51289 RXFP3 - GPCR135|RLN3R1|RXFPR3|SALPR HGNC:24883|MIM:609445|Ensembl:ENSG00000182631|HPRD:17979|Vega:OTTHUMG00000090685 5 5p15.1-p14 relaxin/insulin-like family peptide receptor 3 protein-coding RXFP3 relaxin/insulin-like family peptide receptor 3 O G-protein coupled receptor GPCR135|G-protein coupled receptor SALPR|RLN3 receptor 1|g protein-coupled receptor SALPR|relaxin 3 receptor 1|relaxin family peptide receptor 3|relaxin-3 receptor 1|somatostatin and angiotensin-like peptide receptor|somatostatin- and angiotensin-like peptide receptor 20121230 -9606 51290 ERGIC2 CDA14 Erv41|PTX1|cd002 HGNC:30208|MIM:612236|Ensembl:ENSG00000087502|HPRD:17932|Vega:OTTHUMG00000169322 12 12p11.22 ERGIC and golgi 2 protein-coding ERGIC2 ERGIC and golgi 2 O CD14 protein|endoplasmic reticulum-Golgi intermediate compartment protein 2 20121230 -9606 51291 GMIP - ARHGAP46 HGNC:24852|MIM:609694|Ensembl:ENSG00000089639|HPRD:11005|Vega:OTTHUMG00000182329 19 19p13.11 GEM interacting protein protein-coding GMIP GEM interacting protein O GEM-interacting protein 20121230 -9606 51292 GMPR2 - - HGNC:4377|MIM:610781|Ensembl:ENSG00000100938|HPRD:13590|Vega:OTTHUMG00000171912 14 14q12 guanosine monophosphate reductase 2 protein-coding GMPR2 guanosine monophosphate reductase 2 O GMP reductase 2|guanosine 5'-monophosphate oxidoreductase 2|guanosine monophosphate reductase isolog 20121230 -9606 51293 CD320 UNQ198/PRO224 8D6|8D6A|TCBLR HGNC:16692|MIM:606475|Ensembl:ENSG00000167775|HPRD:05929 19 19p13.3-p13.2 CD320 molecule protein-coding CD320 CD320 molecule O 8D6 antigen|CD320 antigen|FDC-SM-8D6|FDC-signaling molecule 8D6|transcobalamin receptor 20121230 -9606 51294 PCDH12 UNQ395/PRO731 VE-cadherin-2|VECAD2 HGNC:8657|MIM:605622|Ensembl:ENSG00000113555|HPRD:09287|Vega:OTTHUMG00000129658 5 5q31 protocadherin 12 protein-coding PCDH12 protocadherin 12 O VE-cad-2|VE-cadherin 2|protocadherin-12|vascular cadherin-2|vascular endothelial cadherin 2|vascular endothelial cadherin-2 20121230 -9606 51295 ECSIT - SITPEC HGNC:29548|MIM:608388|Ensembl:ENSG00000130159|HPRD:12225|Vega:OTTHUMG00000178590 19 19p13.2 ECSIT homolog (Drosophila) protein-coding ECSIT ECSIT homolog (Drosophila) O evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial|likely ortholog of mouse signaling intermediate in Toll pathway evolutionarily conserved 20121230 -9606 51296 SLC15A3 - OCTP|PHT2|PTR3 HGNC:18068|MIM:610408|Ensembl:ENSG00000110446|HPRD:11565|Vega:OTTHUMG00000167804 11 11q12.2 solute carrier family 15, member 3 protein-coding SLC15A3 solute carrier family 15, member 3 O osteoclast transporter|peptide transporter 3|peptide/histidine transporter 2|solute carrier family 15 member 3 20121230 -9606 51297 BPIFA1 UNQ787/PRO1606 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 HGNC:15749|MIM:607412|Ensembl:ENSG00000198183|HPRD:07594|Vega:OTTHUMG00000032243 20 20q11.2 BPI fold containing family A, member 1 protein-coding BPIFA1 BPI fold containing family A, member 1 O BPI fold-containing family A member 1|ligand-binding protein RYA3|lung-specific protein X|nasopharyngeal carcinoma-related protein|palate lung and nasal epithelium clone protein|palate, lung and nasal epithelium associated|protein Plunc|secretory protein in upper respiratory tracts|tracheal epithelium enriched protein|tracheal epithelium-enriched protein|von Ebner protein Hl 20121230 -9606 51298 THEG - CT56|THEG1 HGNC:13706|MIM:609503|Ensembl:ENSG00000105549|HPRD:15503|Vega:OTTHUMG00000165491 19 19p13.3 theg spermatid protein protein-coding THEG theg spermatid protein O Theg homolog|cancer/testis antigen 56|testicular haploid expressed gene protein|testis-specific 20121230 -9606 51299 NRN1 - NRN|dJ380B8.2 HGNC:17972|MIM:607409|Ensembl:ENSG00000124785|HPRD:07592|Vega:OTTHUMG00000014184 6 6p25.1 neuritin 1 protein-coding NRN1 neuritin 1 O neuritin 20121230 -9606 51300 TIMMDC1 UNQ247/PRO284 C3orf1 HGNC:1321|Ensembl:ENSG00000113845|HPRD:12817|Vega:OTTHUMG00000159388 3 3q13.33 translocase of inner mitochondrial membrane domain containing 1 protein-coding TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 O M5-14 protein|translocase of inner mitochondrial membrane domain-containing protein 1|transmembrane protein C3orf1 20121230 -9606 51301 GCNT4 - C2GNT3 HGNC:17973|Ensembl:ENSG00000176928|HPRD:16651|Vega:OTTHUMG00000131272 5 5q12 glucosaminyl (N-acetyl) transferase 4, core 2 protein-coding GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 O beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4|core 2 beta-1,6-N-acetylglucosaminyltransferase 3|core 2-branching enzyme 3|core2-GlcNAc-transferase 3|glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) 20121230 -9606 51302 CYP39A1 - - HGNC:17449|MIM:605994|Ensembl:ENSG00000146233|HPRD:07067|Vega:OTTHUMG00000014785 6 6p21.1-p11.2 cytochrome P450, family 39, subfamily A, polypeptide 1 protein-coding CYP39A1 cytochrome P450, family 39, subfamily A, polypeptide 1 O 24-hydroxycholesterol 7-alpha-hydroxylase|cytochrome P450 39A1|cytochrome P450, subfamily XXXIX (oxysterol 7 alpha-hydroxylase), polypeptide 1|hCYP39A1|oxysterol 7-alpha-hydroxylase|oxysterol 7alpha-hydroxylase 20121230 -9606 51303 FKBP11 UNQ336/PRO535 FKBP19 HGNC:18624|MIM:610571|Ensembl:ENSG00000134285|HPRD:11170|Vega:OTTHUMG00000170402 12 12q13.12 FK506 binding protein 11, 19 kDa protein-coding FKBP11 FK506 binding protein 11, 19 kDa O 19 kDa FK506-binding protein|19 kDa FKBP|FK506-binding protein 11|FKBP-11|FKBP-19|PPIase FKBP11|peptidyl-prolyl cis-trans isomerase FKBP11|rotamase 20121230 -9606 51304 ZDHHC3 HSD49 DHHC-3|GODZ|ZNF373 HGNC:18470|Ensembl:ENSG00000163812|HPRD:15718|Vega:OTTHUMG00000133093 3 3p21.31 zinc finger, DHHC-type containing 3 protein-coding ZDHHC3 zinc finger, DHHC-type containing 3 O DHHC1 protein|Golgi apparatus-specific protein with DHHC zinc finger domain|golgi-specific DHHC Zinc Finger Protein|palmitoyltransferase ZDHHC3|zinc finger DHHC domain-containing protein 3|zinc finger protein 373|zinc finger, DHHC domain containing 3 20121230 -9606 51305 KCNK9 - K2p9.1|KT3.2|TASK-3|TASK3 HGNC:6283|MIM:605874|Ensembl:ENSG00000169427|HPRD:16167|Vega:OTTHUMG00000164186 8 8q24.3 potassium channel, subfamily K, member 9 protein-coding KCNK9 potassium channel, subfamily K, member 9 O TWIK-related acid-sensitive K(+) channel 3|TWIK-related acid-sensitive K+ channel 3|acid-sensitive potassium channel protein TASK-3|potassium channel TASK3|potassium channel subfamily K member 9|two pore K(+) channel KT3.2|two pore potassium channel KT3.2 20121230 -9606 51306 FAM13B - ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 HGNC:1335|MIM:609371|Ensembl:ENSG00000031003|HPRD:06464|Vega:OTTHUMG00000129202 5 5q31 family with sequence similarity 13, member B protein-coding FAM13B family with sequence similarity 13, member B O GAP-like protein N61|family with sequence similarity 13, member B1|protein FAM13B 20121230 -9606 51307 FAM53C - C5orf6 HGNC:1336|MIM:609372|Ensembl:ENSG00000120709|HPRD:10785|Vega:OTTHUMG00000129201 5 5q31 family with sequence similarity 53, member C protein-coding FAM53C family with sequence similarity 53, member C O protein FAM53C|putative nuclear protein 20121230 -9606 51308 REEP2 - C5orf19|SGC32445 HGNC:17975|MIM:609347|Ensembl:ENSG00000132563|HPRD:16655|Vega:OTTHUMG00000129205 5 5q31 receptor accessory protein 2 protein-coding REEP2 receptor accessory protein 2 O receptor expression-enhancing protein 2 20121230 -9606 51309 ARMCX1 LL0XNC01-61B11.1 ALEX1 HGNC:18073|MIM:300362|Ensembl:ENSG00000126947|HPRD:02292|Vega:OTTHUMG00000022033 X Xq21.33-q22.2 armadillo repeat containing, X-linked 1 protein-coding ARMCX1 armadillo repeat containing, X-linked 1 O ARM protein lost in epithelial cancers on chromosome X 1|arm protein lost in epithelial cancers, X chromosome, 1|armadillo repeat-containing X-linked protein 1 20121230 -9606 51310 SLC22A17 - 24p3R|BOCT|BOIT|NGALR|NGALR2|NGALR3|hBOIT HGNC:23095|MIM:611461|Ensembl:ENSG00000092096|HPRD:15349|Vega:OTTHUMG00000028740 14 14q11.2 solute carrier family 22, member 17 protein-coding SLC22A17 solute carrier family 22, member 17 O 24p3 receptor|NGAL receptor|brain-type organic cation transporter|lipocalin-2 receptor|neutrophil gelatinase-associated lipocalin receptor|potent brain type organic ion transporter|solute carrier family 22 (organic cation transporter), member 17|solute carrier family 22 member 17 20121230 -9606 51311 TLR8 UNQ249/PRO286 CD288 HGNC:15632|MIM:300366|Ensembl:ENSG00000101916|HPRD:02296|Vega:OTTHUMG00000021145 X Xp22 toll-like receptor 8 protein-coding TLR8 toll-like receptor 8 O - 20121230 -9606 51312 SLC25A37 HT015 MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 HGNC:29786|MIM:610387|Ensembl:ENSG00000147454|HPRD:17605|Vega:OTTHUMG00000163865 8 8p21.2 solute carrier family 25 (mitochondrial iron transporter), member 37 protein-coding SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 O mitochondrial iron transporter 1|mitochondrial solute carrier protein|mitoferrin|mitoferrin-1|predicted protein of HQ2217|solute carrier family 25, member 37 20121230 -9606 51313 FAM198B AD021 AD036|C4orf18 HGNC:25312|Ensembl:ENSG00000164125|HPRD:13194|Vega:OTTHUMG00000161537 4 4q32.1 family with sequence similarity 198, member B protein-coding FAM198B family with sequence similarity 198, member B O expressed in nerve and epithelium during development|protein FAM198B 20121230 -9606 51314 NME8 - CILD6|NM23-H8|SPTRX2|TXNDC3|sptrx-2 HGNC:16473|MIM:607421|Ensembl:ENSG00000086288|HPRD:16243|Vega:OTTHUMG00000023716 7 7p14.1 NME/NM23 family member 8 protein-coding NME8 NME/NM23 family member 8 O sperm-specific thioredoxin 2|spermatid-specific thioredoxin-2|thioredoxin domain containing 3 (spermatozoa)|thioredoxin domain-containing protein 3 20121230 -9606 51315 KRCC1 BM-003 CHBP2 HGNC:28039|Ensembl:ENSG00000172086|HPRD:11269|Vega:OTTHUMG00000130315 2 2p11.2 lysine-rich coiled-coil 1 protein-coding KRCC1 lysine-rich coiled-coil 1 O cryptogenic hepatitis binding protein|cryptogenic hepatitis-binding protein 2|lysine-rich coiled-coil protein 1 20121230 -9606 51316 PLAC8 BM-004 C15|onzin HGNC:19254|MIM:607515|Ensembl:ENSG00000145287|HPRD:06335|Vega:OTTHUMG00000130294 4 4q21.22 placenta-specific 8 protein-coding PLAC8 placenta-specific 8 O placenta-specific gene 8 protein 20121230 -9606 51317 PHF21A BM-006 BHC80 HGNC:24156|MIM:608325|Ensembl:ENSG00000135365|Vega:OTTHUMG00000167038 11 11p11.2 PHD finger protein 21A protein-coding PHF21A PHD finger protein 21A O BHC80a|BRAF35-HDAC complex protein BHC80|BRAF35/HDAC2 complex (80 kDa) 20121230 -9606 51318 MRPL35 BM-007 L35mt|MRP-L35 HGNC:14489|MIM:611841|Ensembl:ENSG00000132313|HPRD:14755|Vega:OTTHUMG00000037385 2 2p11.2 mitochondrial ribosomal protein L35 protein-coding MRPL35 mitochondrial ribosomal protein L35 O 39S ribosomal protein L35, mitochondrial 20121230 -9606 51319 RSRC1 BM-011 SFRS21|SRrp53 HGNC:24152|MIM:613352|Ensembl:ENSG00000174891|HPRD:18006|Vega:OTTHUMG00000158758 3 3q25.32 arginine/serine-rich coiled-coil 1 protein-coding RSRC1 arginine/serine-rich coiled-coil 1 O arginine/serine-rich coiled-coil protein 1|serine/Arginine-related protein 53|splicing factor, arginine/serine-rich 21 20121230 -9606 51320 MEX3C BM-013 MEX-3C|RKHD2|RNF194 HGNC:28040|MIM:611005|Ensembl:ENSG00000176624|HPRD:15255|Vega:OTTHUMG00000132693 18 18q21.2 mex-3 homolog C (C. elegans) protein-coding MEX3C mex-3 homolog C (C. elegans) O RING finger and KH domain-containing protein 2|RING finger protein 194|RNA-binding E3 ubiquitin-protein ligase MEX3C|RNA-binding protein MEX3C|ring finger and KH domain containing 2 20121230 -9606 51321 AMZ2 BM-014 - HGNC:28041|Ensembl:ENSG00000196704|HPRD:14237|Vega:OTTHUMG00000179802 17 17q24.2 archaelysin family metallopeptidase 2 protein-coding AMZ2 archaelysin family metallopeptidase 2 O archaemetzincin-2|archaemetzincins-2|archeobacterial metalloproteinase-like protein 2 20121230 -9606 51322 WAC RP11-48B24.1 BM-016|PRO1741|Wwp4 HGNC:17327|Ensembl:ENSG00000095787|HPRD:18291|Vega:OTTHUMG00000017872 10 - WW domain containing adaptor with coiled-coil protein-coding WAC WW domain containing adaptor with coiled-coil O WW domain-containing adapter protein with coiled-coil 20121230 -9606 51324 SPG21 BM-019 ACP33|GL010|MASPARDIN|MAST HGNC:20373|MIM:608181|Ensembl:ENSG00000090487|HPRD:10492|Vega:OTTHUMG00000133098 15 15q21-q22 spastic paraplegia 21 (autosomal recessive, Mast syndrome) protein-coding SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome) O acid cluster protein 33|maspardin|spastic paraplegia 21 autosomal recessive Mast syndrome protein|spastic paraplegia 21 protein 20121230 -9606 51326 ARL17A - ARF1P2|ARL17P1 HGNC:24096|Ensembl:ENSG00000185829|HPRD:17424|Vega:OTTHUMG00000132817 17 17q21.31 ADP-ribosylation factor-like 17A protein-coding ARL17A ADP-ribosylation factor-like 17A O ADP-ribosylation factor 1 pseudogene 2|ADP-ribosylation factor 7|ADP-ribosylation factor-like 17 pseudogene 1|ADP-ribosylation factor-like 17-like 20121230 -9606 51327 AHSP - EDRF|ERAF HGNC:18075|MIM:605821|Ensembl:ENSG00000169877|HPRD:12052|Vega:OTTHUMG00000132461 16 16p11.2 alpha hemoglobin stabilizing protein protein-coding AHSP alpha hemoglobin stabilizing protein O alpha hemoglobin stabilising protein|alpha-hemoglobin-stabilizing protein|erythroid associated factor|erythroid differentiation associated factor|erythroid differentiation-related factor|erythroid-associated factor 20121230 -9606 51329 ARL6IP4 - SFRS20|SR-25|SRp25|SRrp37 HGNC:18076|MIM:607668|Ensembl:ENSG00000182196|HPRD:09640|Vega:OTTHUMG00000168779 12 12q24.31 ADP-ribosylation-like factor 6 interacting protein 4 protein-coding ARL6IP4 ADP-ribosylation-like factor 6 interacting protein 4 O ADP-ribosylation factor-like protein 6-interacting protein 4|ARL-6-interacting protein 4|HSP-975|HSVI binding protein|HSVI-binding protein|SR-15|SRp25 nuclear protein|aip-4|splicing factor, arginine/serine-rich 20|splicing regulator SRrp38 20121230 -9606 51330 TNFRSF12A - CD266|FN14|TWEAKR HGNC:18152|MIM:605914|Ensembl:ENSG00000006327|HPRD:05801|Vega:OTTHUMG00000129001 16 16p13.3 tumor necrosis factor receptor superfamily, member 12A protein-coding TNFRSF12A tumor necrosis factor receptor superfamily, member 12A O FGF-inducible 14|fibroblast growth factor-inducible immediate-early response protein 14|tumor necrosis factor receptor superfamily member 12A|tweak-receptor|type I transmembrane protein Fn14 20121230 -9606 51332 SPTBN5 - BSPECV|HUBSPECV|HUSPECV HGNC:15680|MIM:605916|Ensembl:ENSG00000137877|HPRD:10438|Vega:OTTHUMG00000172720 15 15q21 spectrin, beta, non-erythrocytic 5 protein-coding SPTBN5 spectrin, beta, non-erythrocytic 5 O beta V spectrin|beta-V spectrin|spectrin beta chain, brain 4|spectrin beta chain, non-erythrocytic 5|spectrin, non-erythroid beta chain 4 20121230 -9606 51333 ZNF771 - DSC43 HGNC:29653|Ensembl:ENSG00000179965|HPRD:14238|Vega:OTTHUMG00000176985 16 16p11.2 zinc finger protein 771 protein-coding ZNF771 zinc finger protein 771 O mesenchymal stem cell protein DSC43 20121230 -9606 51334 PRR16 - DSC54 HGNC:29654|Ensembl:ENSG00000184838|HPRD:14239|Vega:OTTHUMG00000128903 5 5q23.1 proline rich 16 protein-coding PRR16 proline rich 16 O mesenchymal stem cell protein DSC54|proline-rich protein 16 20121230 -9606 51335 NGRN HT020 DSC92 HGNC:18077|Ensembl:ENSG00000182768|HPRD:14825|Vega:OTTHUMG00000149807 15 15q26.1 neugrin, neurite outgrowth associated protein-coding NGRN neugrin, neurite outgrowth associated O mesenchymal stem cell protein DSC92|neugrin|neurite outgrowth associated protein|neurite outgrowth-associated protein|spinal cord-derived protein FI58G 20121230 -9606 51337 THEM6 PSEC0098 C8orf55|DSCD75 HGNC:29656|Ensembl:ENSG00000130193|HPRD:14241|Vega:OTTHUMG00000164673 8 8q24.3 thioesterase superfamily member 6 protein-coding THEM6 thioesterase superfamily member 6 O UPF0670 protein C8orf55|UPF0670 protein THEM6|mesenchymal stem cell protein DSCD75 20121230 -9606 51338 MS4A4A HDCME31P 4SPAN1|CD20-L1|CD20L1|MS4A4|MS4A7 HGNC:13371|MIM:606547|Ensembl:ENSG00000110079|HPRD:08408|Vega:OTTHUMG00000154949 11 11q12 membrane-spanning 4-domains, subfamily A, member 4A protein-coding MS4A4A membrane-spanning 4-domains, subfamily A, member 4A O CD20 antigen-like 1|Fc epsilon receptor beta subunit homolog|four-span transmembrane protein 1|membrane-spanning 4-domains subfamily A member 4A|membrane-spanning 4-domains, subfamily A, member 4 20121230 -9606 51339 DACT1 - DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3 HGNC:17748|MIM:607861|Ensembl:ENSG00000165617|HPRD:09709|Vega:OTTHUMG00000140324 14 14q23.1 dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) protein-coding DACT1 dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) O dapper antagonist of catenin 1|dapper homolog 1|hepatocellular carcinoma novel gene 3 protein|heptacellular carcinoma novel gene 3 20121230 -9606 51340 CRNKL1 RP5-1002M8.1 CLF|CRN|Clf1|HCRN|MSTP021|SYF3 HGNC:15762|MIM:610952|Ensembl:ENSG00000101343|HPRD:09898|Vega:OTTHUMG00000032000 20 20p11.2 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) protein-coding CRNKL1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) O Crn, crooked neck-like 1|crooked neck homolog|crooked neck-like 1|crooked neck-like protein 1 20121230 -9606 51341 ZBTB7A - FBI-1|FBI1|LRF|ZBTB7|ZNF857A|pokemon HGNC:18078|MIM:605878|Ensembl:ENSG00000178951|HPRD:10433 19 19p13.3 zinc finger and BTB domain containing 7A protein-coding ZBTB7A zinc finger and BTB domain containing 7A O HIV-1 1st-binding protein 1|HIV-1 inducer of short transcripts binding protein|POK erythroid myeloid ontogenic factor|POZ and Krueppel erythroid myeloid ontogenic factor|TIP21|TTF-I-interacting peptide 21|factor binding IST protein 1|factor that binds to inducer of short transcripts protein 1|leukemia/lymphoma-related factor|lymphoma related factor|zinc finger and BTB domain containing 7A, HIV-1 inducer of short transcripts binding protein|zinc finger and BTB domain-containing protein 7A|zinc finger protein 857A 20121230 -9606 51343 FZR1 - CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1 HGNC:24824|MIM:603619|Ensembl:ENSG00000105325|HPRD:04687|Vega:OTTHUMG00000180747 19 19p13.3 fizzy/cell division cycle 20 related 1 (Drosophila) protein-coding FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) O CDC20-like 1b|CDC20-like protein 1|cdh1/Hct1 homolog|fizzy-related protein homolog 20121230 -9606 51347 TAOK3 - DPK|JIK|MAP3K18 HGNC:18133|Ensembl:ENSG00000135090|HPRD:11620|Vega:OTTHUMG00000168875 12 12q TAO kinase 3 protein-coding TAOK3 TAO kinase 3 O CTCL-associated antigen HD-CL-09|JNK/SAPK-inhibitory kinase|STE20-like kinase|cutaneous T-cell lymphoma-associated antigen HD-CL-09|dendritic cell-derived protein kinase|hKFC-A|jun kinase-inhibitory kinase|kinase from chicken homolog A|serine/threonine-protein kinase TAO3|thousand and one amino acid protein 3 20121230 -9606 51348 KLRF1 - CLEC5C|NKp80 HGNC:13342|MIM:605029|Ensembl:ENSG00000150045|HPRD:05432|Vega:OTTHUMG00000168391 12 12p13.31 killer cell lectin-like receptor subfamily F, member 1 protein-coding KLRF1 killer cell lectin-like receptor subfamily F, member 1 O C-type lectin domain family 5 member C|activating coreceptor NKp80|killer cell lectin-like receptor F1|killer cell lectin-like receptor subfamily F member 1|lectin-like receptor F1 20121230 -9606 51350 KRT76 - HUMCYT2A|KRT2B|KRT2P HGNC:24430|Ensembl:ENSG00000185069|HPRD:17123|Vega:OTTHUMG00000169797 12 12q13.13 keratin 76 protein-coding KRT76 keratin 76 O CK-2P|K2P|K76|cytokeratin 2|cytokeratin-2P|keratin 2p|keratin, type II cytoskeletal 2 oral|keratin-76|type-II keratin Kb9 20121230 -9606 51351 ZNF117 - H-plk|HPF9 HGNC:12897|MIM:194624|Ensembl:ENSG00000152926|HPRD:08937|HPRD:13619|Vega:OTTHUMG00000156631 7 7q11.21 zinc finger protein 117 protein-coding ZNF117 zinc finger protein 117 O Krueppel-related zinc finger protein|provirus-linked krueppel|zinc finger protein HPF9 20121230 -9606 51352 WT1-AS - WIT-1|WIT1|WT1-AS1|WT1AS|dJ74J1.1 HGNC:18135|MIM:607899|HPRD:07439 11 11p13 WT1 antisense RNA miscRNA WT1-AS WT1 antisense RNA O - 20121230 -9606 51359 ERVH-4 - HERV-HD1|HSU88895 HGNC:21344 14 - endogenous retrovirus group H, member 4 unknown ERVH-4 endogenous retrovirus group H, member 4 O - 20121017 -9606 51360 MBTPS2 - BRESEK|IFAP|KFSDX|S2P HGNC:15455|MIM:300294|Ensembl:ENSG00000012174|HPRD:02243|Vega:OTTHUMG00000021237 X Xp22.12-p22.11 membrane-bound transcription factor peptidase, site 2 protein-coding MBTPS2 membrane-bound transcription factor peptidase, site 2 O SREBPs intramembrane protease|endopeptidase S2P|membrane-bound transcription factor protease, site 2|membrane-bound transcription factor site-2 protease|sterol regulatory element-binding proteins intramembrane protease 20121230 -9606 51361 HOOK1 - HK1 HGNC:19884|MIM:607820|Ensembl:ENSG00000134709|HPRD:07428|Vega:OTTHUMG00000008990 1 1p32.1 hook homolog 1 (Drosophila) protein-coding HOOK1 hook homolog 1 (Drosophila) O h-hook1|hHK1|protein Hook homolog 1 20121230 -9606 51362 CDC40 RP1-71D21.3 EHB3|PRP17|PRPF17 HGNC:17350|MIM:605585|Ensembl:ENSG00000168438|HPRD:05721|Vega:OTTHUMG00000015358 6 6q21 cell division cycle 40 homolog (S. cerevisiae) protein-coding CDC40 cell division cycle 40 homolog (S. cerevisiae) O EH-binding protein 3|PRP17 homolog|hPRP17|pre-mRNA splicing factor 17|pre-mRNA-processing factor 17 20121230 -9606 51363 CHST15 - BRAG|GALNAC4S-6ST|RP11-47G11.1 HGNC:18137|MIM:608277|Ensembl:ENSG00000182022|HPRD:12203|Vega:OTTHUMG00000019208 10 10q26 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 protein-coding CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 O B cell RAG associated protein (GALNAC4S-6ST)|B-cell RAG-associated gene protein|carbohydrate sulfotransferase 15|hBRAG 20121230 -9606 51364 ZMYND10 LUCA12.4 BLU|FLU HGNC:19412|MIM:607070|Ensembl:ENSG00000004838|HPRD:06145|Vega:OTTHUMG00000156874 3 3p21.3 zinc finger, MYND-type containing 10 protein-coding ZMYND10 zinc finger, MYND-type containing 10 O protein BLu|zinc finger MYND domain-containing protein 10|zinc finger, MYND domain containing 10 20121230 -9606 51365 PLA1A - PS-PLA1|PSPLA1 HGNC:17661|MIM:607460|Ensembl:ENSG00000144837|HPRD:07078|Vega:OTTHUMG00000159425 3 3q13.13-q13.2 phospholipase A1 member A protein-coding PLA1A phospholipase A1 member A O phosphatidylserine-specific phospholipase A1alpha 20121230 -9606 51366 UBR5 - DD5|EDD|EDD1|HYD HGNC:16806|MIM:608413|Ensembl:ENSG00000104517|HPRD:06436|Vega:OTTHUMG00000164755 8 8q22 ubiquitin protein ligase E3 component n-recognin 5 protein-coding UBR5 ubiquitin protein ligase E3 component n-recognin 5 O E3 identified by differential display|E3 ubiquitin protein ligase, HECT domain containing, 1|E3 ubiquitin-protein ligase UBR5|E3 ubiquitin-protein ligase, HECT domain-containing 1|hHYD|hyperplastic discs protein homolog|progestin induced protein|progestin-induced protein|ubiquitin-protein ligase 20121230 -9606 51367 POP5 AD-008 HSPC004|RPP2|RPP20|hPop5 HGNC:17689|MIM:609992|Ensembl:ENSG00000167272|HPRD:15158|Vega:OTTHUMG00000169023 12 12q24.31 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) protein-coding POP5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) O ribonuclease P/MRP protein subunit POP5 20121230 -9606 51368 TEX264 UNQ337/PRO536 SIG11|ZSIG11 HGNC:30247|Ensembl:ENSG00000164081|HPRD:15492|Vega:OTTHUMG00000156901 3 3p21.31 testis expressed 264 protein-coding TEX264 testis expressed 264 O putative secreted protein ZSIG11|testis expressed gene 264|testis-expressed sequence 264 protein 20121230 -9606 51371 POMP HSPC014 C13orf12|PNAS-110|UMP1 HGNC:20330|MIM:613386|Ensembl:ENSG00000132963|HPRD:12613|Vega:OTTHUMG00000016652 13 13q12.3 proteasome maturation protein protein-coding POMP proteasome maturation protein O 2510048O06Rik|hUMP1|proteassemblin|protein UMP1 homolog|voltage-gated K channel beta subunit 4.1|voltage-gated potassium channel beta subunit 4.1 20121230 -9606 51372 TMA7 HSPC016 CCDC72 HGNC:26932|Ensembl:ENSG00000232112|HPRD:13686|Vega:OTTHUMG00000156588 3 3p21.31 translational machinery associated 7 homolog (S. cerevisiae) protein-coding TMA7 translational machinery associated 7 homolog (S. cerevisiae) O coiled-coil domain containing 72|coiled-coil domain-containing protein 72|translation machinery-associated protein 7 20121230 -9606 51373 MRPS17 - HSPC011|MRP-S17|RPMS17|S17mt HGNC:14047|MIM:611980|Ensembl:ENSG00000239789|HPRD:14779|Vega:OTTHUMG00000023153 7 7p11 mitochondrial ribosomal protein S17 protein-coding MRPS17 mitochondrial ribosomal protein S17 O 28S ribosomal protein S17, mitochondrial 20121230 -9606 51374 ATRAID HSPC013 APR--3|APR-3|APR3|C2orf28|PRO240|p18 HGNC:24090|Ensembl:ENSG00000138085|HPRD:16652|Vega:OTTHUMG00000128405 2 2p23.3 all-trans retinoic acid-induced differentiation factor protein-coding ATRAID all-trans retinoic acid-induced differentiation factor O apoptosis related protein 3|apoptosis related protein APR-3|apoptosis-related protein 3 20121230 -9606 51375 SNX7 RP11-296E3.1 - HGNC:14971|MIM:614904|Ensembl:ENSG00000162627|HPRD:15416|Vega:OTTHUMG00000010723 1 1p21.3 sorting nexin 7 protein-coding SNX7 sorting nexin 7 O sorting nexin-7 20121230 -9606 51377 UCHL5 RP11-101E13.2 CGI-70|INO80R|UCH-L5|UCH37 HGNC:19678|MIM:610667|Ensembl:ENSG00000116750|HPRD:10293|Vega:OTTHUMG00000035561 1 1q32 ubiquitin carboxyl-terminal hydrolase L5 protein-coding UCHL5 ubiquitin carboxyl-terminal hydrolase L5 O INO80 complex subunit R|ubiquitin C-terminal hydrolase UCH37|ubiquitin carboxyl-terminal esterase L5|ubiquitin carboxyl-terminal hydrolase isozyme L5|ubiquitin thioesterase L5 20121230 -9606 51378 ANGPT4 - AGP4|ANG-3|ANG4 HGNC:487|MIM:603705|Ensembl:ENSG00000101280|HPRD:04747|Vega:OTTHUMG00000031652 20 20p13 angiopoietin 4 protein-coding ANGPT4 angiopoietin 4 O ANG-4|angiopoietin-3|angiopoietin-4|dJ824F16.2 (angiopoietin 4) 20121230 -9606 51379 CRLF3 - CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2 HGNC:17177|MIM:614853|Ensembl:ENSG00000176390|HPRD:16757|Vega:OTTHUMG00000179005 17 17q11.2 cytokine receptor-like factor 3 protein-coding CRLF3 cytokine receptor-like factor 3 O cytokine receptor-like molecule 9|cytokine receptor-related protein 4|type I cytokine receptor-like factor p48 20121230 -9606 51380 CSAD - CSD|PCAP HGNC:18966|Ensembl:ENSG00000139631|HPRD:16763|Vega:OTTHUMG00000048076 12 12q13.11-q14.3 cysteine sulfinic acid decarboxylase protein-coding CSAD cysteine sulfinic acid decarboxylase O P-selectin cytoplasmic tail-associated protein|cysteine sulfinic acid decarboxylase-related protein|cysteine-sulfinate decarboxylase|sulfinoalanine decarboxylase 20121230 -9606 51382 ATP6V1D - ATP6M|VATD|VMA8 HGNC:13527|MIM:609398|Ensembl:ENSG00000100554|HPRD:16524|Vega:OTTHUMG00000171244 14 14q23-q24.2 ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D protein-coding ATP6V1D ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D O ATPase, H+ transporting lysosomal, member M|ATPase, H+ transporting, lysosomal (vacuolar proton pump)|H(+)-transporting two-sector ATPase, subunit M|V-ATPase 28 kDa accessory protein|V-ATPase D subunit|V-ATPase subunit D|V-type proton ATPase subunit D|vacuolar ATP synthase subunit D|vacuolar H-ATPase subunit D|vacuolar proton pump D subunit|vacuolar proton pump delta polypeptide|vacuolar proton pump subunit D|vacuolar proton-ATPase subunit D 20121230 -9606 51384 WNT16 - - HGNC:16267|MIM:606267|Ensembl:ENSG00000002745|HPRD:05882|Vega:OTTHUMG00000156963 7 7q31 wingless-type MMTV integration site family, member 16 protein-coding WNT16 wingless-type MMTV integration site family, member 16 O protein Wnt-16|wingless-type MMTV integration site family member 16b 20121230 -9606 51385 ZNF589 - SZF1 HGNC:16747|Ensembl:ENSG00000164048|HPRD:15865|Vega:OTTHUMG00000156833 3 3p21 zinc finger protein 589 protein-coding ZNF589 zinc finger protein 589 O KRAB-zinc finger protein SZF1-1|stem cell zinc finger protein 1 20121230 -9606 51386 EIF3L AL022311.1 EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005 HGNC:18138|Ensembl:ENSG00000100129|HPRD:10932|Vega:OTTHUMG00000150671 22 22q eukaryotic translation initiation factor 3, subunit L protein-coding EIF3L eukaryotic translation initiation factor 3, subunit L O eIEF associated protein HSPC021|eukaryotic translation initiation factor 3 subunit 6-interacting protein|eukaryotic translation initiation factor 3 subunit E-interacting protein|eukaryotic translation initiation factor 3 subunit L 20121230 -9606 51388 NIP7 CGI-37 HSPC031|KD93 HGNC:24328|Ensembl:ENSG00000132603|HPRD:16709|Vega:OTTHUMG00000137568 16 16q22.1 nuclear import 7 homolog (S. cerevisiae) protein-coding NIP7 nuclear import 7 homolog (S. cerevisiae) O 60S ribosome subunit biogenesis protein NIP7 homolog 20121230 -9606 51389 RWDD1 CGI-24 PTD013 HGNC:20993|Ensembl:ENSG00000111832|HPRD:15286|Vega:OTTHUMG00000015441 6 6q13-q22.33 RWD domain containing 1 protein-coding RWDD1 RWD domain containing 1 O DRG family-regulatory protein 2|RWD domain-containing protein 1 20121230 -9606 51390 AIG1 RP1-95L4.1 AIG-1|dJ95L4.1 HGNC:21607|MIM:608514|Ensembl:ENSG00000146416|HPRD:16346|Vega:OTTHUMG00000015721 6 6q24.2 androgen-induced 1 protein-coding AIG1 androgen-induced 1 O androgen-induced gene 1 protein 20121230 -9606 51393 TRPV2 - VRL|VRL-1|VRL1 HGNC:18082|MIM:606676|Ensembl:ENSG00000187688|HPRD:05980|Vega:OTTHUMG00000058989 17 17p11.2 transient receptor potential cation channel, subfamily V, member 2 protein-coding TRPV2 transient receptor potential cation channel, subfamily V, member 2 O OTRPC2|osm-9-like TRP channel 2|transient receptor potential cation channel subfamily V member 2|vanilloid receptor-like protein 1 20121230 -9606 51397 COMMD10 HSPC305 PTD002 HGNC:30201|Ensembl:ENSG00000145781|HPRD:16734|Vega:OTTHUMG00000162922 5 5q23.1 COMM domain containing 10 protein-coding COMMD10 COMM domain containing 10 O COMM domain-containing protein 10 20121230 -9606 51398 WDR83OS CGI-140 C19orf56|PTD008 HGNC:30203|Ensembl:ENSG00000105583|HPRD:17922 19 19p13.2 WD repeat domain 83 opposite strand protein-coding WDR83OS WD repeat domain 83 opposite strand O UPF0139 membrane protein C19orf56|WDR83 opposite strand|protein Asterix 20121230 -9606 51399 TRAPPC4 CGI-104 HSPC172|PTD009|SBDN|SYNBINDIN|TRS23 HGNC:19943|MIM:610971|Ensembl:ENSG00000196655|HPRD:18220|Vega:OTTHUMG00000166351 11 11q23.3 trafficking protein particle complex 4 protein-coding TRAPPC4 trafficking protein particle complex 4 O TRS23 homolog|hematopoietic stem/progenitor cell protein 172|trafficking protein particle complex subunit 4 20121230 -9606 51400 PPME1 PP2593 PME-1 HGNC:30178|MIM:611117|Ensembl:ENSG00000214517|HPRD:17864|Vega:OTTHUMG00000168115 11 11q13.4 protein phosphatase methylesterase 1 protein-coding PPME1 protein phosphatase methylesterase 1 O protein phosphatase methylesterase-1 20121230 -9606 51406 NOL7 RP1-223E5.1 C6orf90|PQBP3|RARG-1|dJ223E5.2 HGNC:21040|MIM:611533|Ensembl:ENSG00000225921|HPRD:17641|Vega:OTTHUMG00000014277 6 6p23 nucleolar protein 7, 27kDa protein-coding NOL7 nucleolar protein 7, 27kDa O nucleolar protein 7|nucleolar protein of 27 kDa|polyglutamine binding protein 3|retinoic acid repressible protein 20121230 -9606 51409 HEMK1 - HEMK|MTQ1 HGNC:24923|Ensembl:ENSG00000114735|HPRD:13645|Vega:OTTHUMG00000156849 3 3p21.3 HemK methyltransferase family member 1 protein-coding HEMK1 HemK methyltransferase family member 1 O HEMK homolog 7kb|hemK methyltransferase family member 1|m.HsaHemKP 20121230 -9606 51411 BIN2 - BRAP-1 HGNC:1053|MIM:605936|Ensembl:ENSG00000110934|HPRD:05805 12 12q13 bridging integrator 2 protein-coding BIN2 bridging integrator 2 O breast cancer associated protein BRAP1|breast cancer-associated protein 1|bridging integrator-2 20121230 -9606 51412 ACTL6B - ACTL6|BAF53B HGNC:160|MIM:612458|Ensembl:ENSG00000077080|HPRD:12419|Vega:OTTHUMG00000159661 7 7q22 actin-like 6B protein-coding ACTL6B actin-like 6B O 53 kDa BRG1-associated factor B|BRG1-associated factor 53B|actin-like 6|actin-like protein 6B|actin-related protein Baf53b|arpNalpha|hArpN alpha 20121230 -9606 51421 AMOTL2 - LCCP HGNC:17812|MIM:614658|Ensembl:ENSG00000114019|HPRD:16485|Vega:OTTHUMG00000159777 3 3q21-q22 angiomotin like 2 protein-coding AMOTL2 angiomotin like 2 O Leman coiled-coil protein|angiomotin-like protein 2 20121230 -9606 51422 PRKAG2 - AAKG|AAKG2|CMH6|H91620p|WPWS HGNC:9386|MIM:602743|Ensembl:ENSG00000106617|HPRD:04119|Vega:OTTHUMG00000157324 7 7q36.1 protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit O 5'-AMP-activated protein kinase subunit gamma-2|AMPK subunit gamma-2 20121230 -9606 51426 POLK - DINB1|DINP|POLQ HGNC:9183|MIM:605650|Ensembl:ENSG00000122008|HPRD:09291|Vega:OTTHUMG00000102107 5 5q13 polymerase (DNA directed) kappa protein-coding POLK polymerase (DNA directed) kappa O DNA polymerase kappa 20121230 -9606 51427 ZNF107 - Y8|ZFD25|ZNF588|smap-7 HGNC:12887|MIM:603989|Ensembl:ENSG00000196247|HPRD:18669|Vega:OTTHUMG00000129433 7 7q11.2 zinc finger protein 107 protein-coding ZNF107 zinc finger protein 107 O C2H2 type zinc-finger protein|zinc finger protein (ZFD25)|zinc finger protein 588|zinc finger protein ZFD25 20121230 -9606 51428 DDX41 - ABS HGNC:18674|MIM:608170|Ensembl:ENSG00000183258|HPRD:10490|Vega:OTTHUMG00000130858 5 5q35.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 protein-coding DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 O 2900024F02Rik|DEAD box protein 41|DEAD box protein abstrakt homolog|DEAD-box protein abstrakt|probable ATP-dependent RNA helicase DDX41|putative RNA helicase 20121230 -9606 51429 SNX9 RP11-266C7.10-001 MST155|MSTP155|SDP1|SH3PX1|SH3PXD3A|WISP HGNC:14973|MIM:605952|Ensembl:ENSG00000130340|HPRD:12072|Vega:OTTHUMG00000015903 6 6q25.1-q26 sorting nexin 9 protein-coding SNX9 sorting nexin 9 O SH3 and PX domain-containing protein 1|SH3 and PX domain-containing protein 3A|SH3 and PX domain-containing protein SH3PX1|Wiskott-Aldrich syndrome protein (WASP) interactor protein|sorting nexin-9 20121230 -9606 51430 SUCO - C1orf9|CH1|OPT|SLP1 HGNC:1240|Ensembl:ENSG00000094975|HPRD:12732|Vega:OTTHUMG00000034839 1 1q24 SUN domain containing ossification factor protein-coding SUCO SUN domain containing ossification factor O SUN domain-containing ossification factor|SUN-like protein 1|membrane protein CH1|osteopotentia|protein C1orf9|protein osteopotentia homolog 20121230 -9606 51433 ANAPC5 - APC5 HGNC:15713|MIM:606948|Ensembl:ENSG00000089053|HPRD:10453|Vega:OTTHUMG00000169157 12 12q24.31 anaphase promoting complex subunit 5 protein-coding ANAPC5 anaphase promoting complex subunit 5 O anaphase-promoting complex subunit 5|cyclosome subunit 5 20121230 -9606 51434 ANAPC7 - APC7 HGNC:17380|MIM:606949|Ensembl:ENSG00000196510|HPRD:16233|Vega:OTTHUMG00000157009 12 12q24.11 anaphase promoting complex subunit 7 protein-coding ANAPC7 anaphase promoting complex subunit 7 O anaphase-promoting complex subunit 7|cyclosome subunit 7 20121230 -9606 51435 SCARA3 - APC7|CSR|CSR1|MSLR1|MSRL1 HGNC:19000|MIM:602728|Ensembl:ENSG00000168077|HPRD:04104|Vega:OTTHUMG00000163898 8 8p21 scavenger receptor class A, member 3 protein-coding SCARA3 scavenger receptor class A, member 3 O cellular stress response gene protein|cellular stress response protein|macrophage scavenger receptor-like 1|scavenger receptor class A member 3 20121230 -9606 51438 MAGEC2 - CT10|HCA587|MAGEE1 HGNC:13574|MIM:300468|Ensembl:ENSG00000046774|HPRD:06632|Vega:OTTHUMG00000022574 X Xq27 melanoma antigen family C, 2 protein-coding MAGEC2 melanoma antigen family C, 2 O MAGE-C2 antigen|MAGE-E1 antigen|cancer/testis antigen 10|hepatocellular cancer antigen 587|hepatocellular carcinoma-associated antigen 587|melanoma antigen, family E, 1, cancer/testis specific|melanoma-associated antigen C2 20121230 -9606 51439 FAM8A1 - AHCP HGNC:16372|Ensembl:ENSG00000137414|HPRD:13316|Vega:OTTHUMG00000014309 6 6p23 family with sequence similarity 8, member A1 protein-coding FAM8A1 family with sequence similarity 8, member A1 O Autosomal Highly Conserved Protein|protein FAM8A1 20121230 -9606 51440 HPCAL4 - HLP4 HGNC:18212|Ensembl:ENSG00000116983|HPRD:17113|Vega:OTTHUMG00000009246 1 1p34.2 hippocalcin like 4 protein-coding HPCAL4 hippocalcin like 4 O hippocalcin-like protein 4 20121230 -9606 51441 YTHDF2 - HGRG8|NY-REN-2 HGNC:31675|MIM:610640|Ensembl:ENSG00000198492|HPRD:06587|Vega:OTTHUMG00000003648 1 1p35 YTH domain family, member 2 protein-coding YTHDF2 YTH domain family, member 2 O 9430020E02Rik|CLL-associated antigen KW-14|YTH domain family protein 2|high-glucose-regulated protein 8|renal carcinoma antigen NY-REN-2 20121230 -9606 51442 VGLL1 RP1-196E23.1 TDU|VGL1 HGNC:20985|MIM:300583|Ensembl:ENSG00000102243|HPRD:06751|Vega:OTTHUMG00000022509 X Xq26.3 vestigial like 1 (Drosophila) protein-coding VGLL1 vestigial like 1 (Drosophila) O TONDU|WUGSC:H_GS188P18.1b|transcription cofactor vestigial-like protein 1|vgl-1 20121230 -9606 51444 RNF138 HSD4 HSD-4|NARF|STRIN|hNARF HGNC:17765|Ensembl:ENSG00000134758|HPRD:11508|Vega:OTTHUMG00000132265 18 18q12.1 ring finger protein 138, E3 ubiquitin protein ligase protein-coding RNF138 ring finger protein 138, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RNF138|NLK-associated RING finger protein|Nemo-like kinase-associated RING finger protein 20121230 -9606 51447 IP6K2 TCCCIA00113 IHPK2|PIUS HGNC:17313|MIM:606992|Ensembl:ENSG00000068745|HPRD:07380|Vega:OTTHUMG00000133543 3 3p21.31 inositol hexakisphosphate kinase 2 protein-coding IP6K2 inositol hexakisphosphate kinase 2 O ATP:1D-myo-inositol-hexakisphosphate phosphotransferase|inositol hexaphosphate kinase 2|insp6 kinase 2|pi uptake stimulator 20121230 -9606 51449 PCYOX1 UNQ597/PRO1183 PCL1 HGNC:20588|MIM:610995|Ensembl:ENSG00000116005|HPRD:11422|Vega:OTTHUMG00000129671 2 2p13.3 prenylcysteine oxidase 1 protein-coding PCYOX1 prenylcysteine oxidase 1 O prenylcysteine lyase 20121230 -9606 51450 PRRX2 - PMX2|PRX2 HGNC:21338|MIM:604675|Ensembl:ENSG00000167157|HPRD:05244|Vega:OTTHUMG00000020790 9 9q34.1 paired related homeobox 2 protein-coding PRRX2 paired related homeobox 2 O PRX-2|paired mesoderm homeobox protein 2|paired-like homeodomain protein PRX2|paired-related homeobox protein 2 20121230 -9606 51451 LCMT1 CGI-68 LCMT|PPMT1 HGNC:17557|MIM:610286|Ensembl:ENSG00000205629|HPRD:17266|Vega:OTTHUMG00000177182 16 16p12.1 leucine carboxyl methyltransferase 1 protein-coding LCMT1 leucine carboxyl methyltransferase 1 O [Phosphatase 2A protein]-leucine-carboxy methyltransferase 1|protein phosphatase methyltransferase 1|protein-leucine O-methyltransferase 20121230 -9606 51454 GULP1 - CED-6|CED6|GULP HGNC:18649|MIM:608165|Ensembl:ENSG00000144366|HPRD:12181|Vega:OTTHUMG00000132647 2 2q32.3-q33 GULP, engulfment adaptor PTB domain containing 1 protein-coding GULP1 GULP, engulfment adaptor PTB domain containing 1 O PTB domain adapter protein CED-6|PTB domain adaptor protein CED-6|PTB domain-containing engulfment adapter protein 1|cell death protein 6 homolog|engulfment adapter protein 20121230 -9606 51455 REV1 - REV1L HGNC:14060|MIM:606134|Ensembl:ENSG00000135945|HPRD:16202|Vega:OTTHUMG00000130636 2 2q11.1-q11.2 REV1, polymerase (DNA directed) protein-coding REV1 REV1, polymerase (DNA directed) O AIBP80|DNA repair protein REV1|REV1 homolog|REV1- like|alpha integrin-binding protein 80|rev1-like terminal deoxycytidyl transferase 20121230 -9606 51458 RHCG - C15orf6|PDRC2|RHGK|SLC42A3 HGNC:18140|MIM:605381|Ensembl:ENSG00000140519|HPRD:16102|Vega:OTTHUMG00000149647 15 15q25 Rh family, C glycoprotein protein-coding RHCG Rh family, C glycoprotein O Rh type C glycoprotein|Rhesus blood group, C glycoprotein|ammonium transporter Rh type C|rh family type C glycoprotein|rh glycoprotein kidney|rhesus blood group family type C glycoprotein|tumor-related protein DRC2 20121230 -9606 51460 SFMBT1 - RU1|SFMBT HGNC:20255|MIM:607319|Ensembl:ENSG00000163935|HPRD:09539|Vega:OTTHUMG00000159052 3 3p21.1 Scm-like with four mbt domains 1 protein-coding SFMBT1 Scm-like with four mbt domains 1 O Scm-related gene containing four mbt domains|Scm-related gene product containing four mbt domains|renal ubiquitous protein 1|scm-like with four MBT domains protein 1 20121230 -9606 51463 GPR89B CGI-13 GPHR|GPR89|SH120 HGNC:13840|MIM:612806|Ensembl:ENSG00000188092|HPRD:13604|Vega:OTTHUMG00000013452 1 1q21.1 G protein-coupled receptor 89B protein-coding GPR89B G protein-coupled receptor 89B O Golgi pH regulator A|Golgi pH regulator B|protein GPR89|putative MAPK-activating protein PM01|putative NF-kappa-B-activating protein 90 20121230 -9606 51465 UBE2J1 CGI-76 HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p HGNC:17598|Ensembl:ENSG00000198833|HPRD:15599|Vega:OTTHUMG00000016337 6 6q15 ubiquitin-conjugating enzyme E2, J1 protein-coding UBE2J1 ubiquitin-conjugating enzyme E2, J1 O HSUBC6e|non-canonical ubiquitin-conjugating enzyme 1|ubiquitin-conjugating enzyme E2 J1|ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)|ubiquitin-conjugating enzyme E2, J1, U|yeast ubiquitin-conjugating enzyme UBC6 homolog E 20121230 -9606 51466 EVL - RNB6 HGNC:20234|Ensembl:ENSG00000196405|HPRD:10942|Vega:OTTHUMG00000171530 14 14q32.2 Enah/Vasp-like protein-coding EVL Enah/Vasp-like O ena/VASP-like protein|ena/vasodilator-stimulated phosphoprotein-like 20121230 -9606 51471 NAT8B - CML2|Hcml2|NAT8BP HGNC:30235|MIM:608190|HPRD:12188 2 2p13.1 N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) protein-coding NAT8B N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene) O N-acetyltransferase Camello 2|camello-like protein 2|probable N-acetyltransferase 8B 20121230 -9606 51473 DCDC2 RP11-260H5__B.1 DCDC2A|RU2|RU2S HGNC:18141|MIM:605755|Ensembl:ENSG00000146038|HPRD:09308|Vega:OTTHUMG00000016275 6 6p22.1 doublecortin domain containing 2 protein-coding DCDC2 doublecortin domain containing 2 O doublecortin domain-containing protein 2 20121230 -9606 51474 LIMA1 PP624 EPLIN|SREBP3 HGNC:24636|MIM:608364|Ensembl:ENSG00000050405|HPRD:09755|Vega:OTTHUMG00000169852 12 12q13 LIM domain and actin binding 1 protein-coding LIMA1 LIM domain and actin binding 1 O 1110021C24Rik|LIM domain and actin-binding protein 1|epithelial protein lost in neoplasm beta|sterol regulatory element binding protein 3 20121230 -9606 51475 CABP2 - DFNB93 HGNC:1385|MIM:607314|Ensembl:ENSG00000167791|HPRD:09535|Vega:OTTHUMG00000168014 11 11q13.1 calcium binding protein 2 protein-coding CABP2 calcium binding protein 2 O calcium-binding protein 2 20121230 -9606 51477 ISYNA1 - INO1|INOS|IPS|IPS 1|IPS-1 HGNC:29821|MIM:611670|Ensembl:ENSG00000105655|HPRD:17163|Vega:OTTHUMG00000179027 19 19p13.11 inositol-3-phosphate synthase 1 protein-coding ISYNA1 inositol-3-phosphate synthase 1 O MI-1-P synthase|MIP synthase|myo-inositol 1-phosphate synthase A1 20121230 -9606 51478 HSD17B7 RP11-331H2.1 PRAP|SDR37C1 HGNC:5215|MIM:606756|Ensembl:ENSG00000132196|HPRD:05996|Vega:OTTHUMG00000034420 1 1q23 hydroxysteroid (17-beta) dehydrogenase 7 protein-coding HSD17B7 hydroxysteroid (17-beta) dehydrogenase 7 O 17 beta-hydroxysteroid dehydrogenase type VII|17-beta-HSD 7|17-beta-hydroxysteroid dehydrogenase 7|17beta hydroxysteroid dehydrogenase|3-keto-steroid reductase|estradiol 17-beta-dehydrogenase 7|short chain dehydrogenase/reductase family 37C, member 1 20121230 -9606 51479 ANKFY1 - ANKHZN|ZFYVE14 HGNC:20763|MIM:607927|Ensembl:ENSG00000185722|HPRD:09717|Vega:OTTHUMG00000177727 17 17p13.3 ankyrin repeat and FYVE domain containing 1 protein-coding ANKFY1 ankyrin repeat and FYVE domain containing 1 O Rabankyrin-5|ankyrin repeat and FYVE domain-containing protein 1|ankyrin repeat hooked to zinc finger motif|ankyrin repeats hooked to a zinc finger motif 20121230 -9606 51480 VCX2 - VCX-2r|VCX2R|VCXB HGNC:18158|MIM:300532|Ensembl:ENSG00000177504|HPRD:06749|Vega:OTTHUMG00000021105 X Xp22.32 variable charge, X-linked 2 protein-coding VCX2 variable charge, X-linked 2 O VCX-B|variable charge X-linked protein 2|variable charge protein on X with two repeats|variably charged X-B|variably charged protein X-B 20121230 -9606 51481 VCX3A - VCX-8r|VCX-A|VCX3|VCX8R|VCXA HGNC:18159|MIM:300533|Ensembl:ENSG00000169059|HPRD:18280|Vega:OTTHUMG00000021097 X Xp22 variable charge, X-linked 3A protein-coding VCX3A variable charge, X-linked 3A O variable charge X-linked protein 3|variable charge protein on X with eight repeats|variably charged X-A|variably charged protein X-A 20121230 -9606 51490 C9orf114 RP11-545E17.7 CENP-32|HSPC109 HGNC:26933|Ensembl:ENSG00000198917|HPRD:12935|Vega:OTTHUMG00000020762 9 9q34.11 chromosome 9 open reading frame 114 protein-coding C9orf114 chromosome 9 open reading frame 114 O centromere protein 32|uncharacterized protein C9orf114 20121230 -9606 51491 NOP16 CGI-117 HSPC111|HSPC185 HGNC:26934|MIM:612861|Ensembl:ENSG00000048162|HPRD:13694|Vega:OTTHUMG00000163186 5 5q35.2 NOP16 nucleolar protein protein-coding NOP16 NOP16 nucleolar protein O HBV pre-S2 trans-regulated protein 3|NOP16 nucleolar protein homolog|hypothetical protein HSPC111|nucleolar protein 16|nucleolar protein 16 homolog 20121230 -9606 51493 C22orf28 HSPC117 DJ149A16.6|FAAP|RP1-149A16.6 HGNC:26935|MIM:613901|Ensembl:ENSG00000100220|HPRD:13695|Vega:OTTHUMG00000030300 22 22q12 chromosome 22 open reading frame 28 protein-coding C22orf28 chromosome 22 open reading frame 28 O ankyrin repeat domain 54|focal adhesion-associated protein|tRNA-splicing ligase RtcB homolog 20121230 -9606 51495 PTPLAD1 - B-IND1|HACD3|HSPC121 HGNC:24175|Ensembl:ENSG00000074696|HPRD:11037|Vega:OTTHUMG00000172658 15 15q22.2 protein tyrosine phosphatase-like A domain containing 1 protein-coding PTPLAD1 protein tyrosine phosphatase-like A domain containing 1 O 3-hydroxyacyl-CoA dehydratase 3|butyrate-induced protein 1|butyrate-induced transcript 1|hB-ind1|protein tyrosine phosphatase-like protein PTPLAD1|protein-tyrosine phosphatase-like A domain-containing protein 1 20121230 -9606 51496 CTDSPL2 HSPC058 HSPC129 HGNC:26936|Ensembl:ENSG00000137770|HPRD:13697|Vega:OTTHUMG00000131159 15 15q15.3-q21.1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 protein-coding CTDSPL2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 O CTD small phosphatase-like protein 2|CTDSP-like 2 20121230 -9606 51497 TH1L HSPC130 NELF-C|NELF-D|TH1 HGNC:15934|MIM:605297|Ensembl:ENSG00000101158|HPRD:16096|Vega:OTTHUMG00000032861 20 20q13 TH1-like (Drosophila) protein-coding TH1L TH1-like (Drosophila) O NELF-C/D|TH1 drosophila homolog|TH1-like protein|negative elongation factor C/D|negative elongation factor proteins C and D|trihydrophobin 1 20121230 -9606 51499 TRIAP1 HSPC132 MDM35|P53CSV|WF-1 HGNC:26937|MIM:614943|Ensembl:ENSG00000170855|HPRD:13698|Vega:OTTHUMG00000047787 12 12q24.31 TP53 regulated inhibitor of apoptosis 1 protein-coding TRIAP1 TP53 regulated inhibitor of apoptosis 1 O TP53-regulated inhibitor of apoptosis 1|mitochondrial distribution and morphology 35 homolog|p53-inducible cell-survival factor|protein 15E1.1 20121230 -9606 51501 C11orf73 HSPC138 HSPC179|Hikeshi|L7RN6 HGNC:26938|MIM:614908|Ensembl:ENSG00000149196|HPRD:13701|Vega:OTTHUMG00000167212 11 11q14.2 chromosome 11 open reading frame 73 protein-coding C11orf73 chromosome 11 open reading frame 73 O lethal, Chr 7, Rinchik 6|protein Hikeshi 20121230 -9606 51503 CWC15 AD-002 C11orf5|Cwf15|HSPC148|ORF5 HGNC:26939|HPRD:13703 11 11q21 CWC15 spliceosome-associated protein homolog (S. cerevisiae) protein-coding CWC15 CWC15 spliceosome-associated protein homolog (S. cerevisiae) O CWC15 homolog|protein CWC15 homolog|spliceosome-associated protein CWC15 homolog 20121230 -9606 51504 TRMT112 AD-001 HSPC152|HSPC170|TRM112|TRMT11-2 HGNC:26940|Ensembl:ENSG00000173113|HPRD:13705|Vega:OTTHUMG00000167848 11 11q13.1 tRNA methyltransferase 11-2 homolog (S. cerevisiae) protein-coding TRMT112 tRNA methyltransferase 11-2 homolog (S. cerevisiae) O TRM112-like protein|tRNA methyltransferase 112 homolog 20121230 -9606 51506 UFC1 CGI-126 HSPC155 HGNC:26941|MIM:610554|Ensembl:ENSG00000143222|HPRD:15643|Vega:OTTHUMG00000033155 1 1q23.3 ubiquitin-fold modifier conjugating enzyme 1 protein-coding UFC1 ubiquitin-fold modifier conjugating enzyme 1 O Ufm1-conjugating enzyme 1|ubiquitin-fold modifier-conjugating enzyme 1 20121230 -9606 51507 RTFDC1 AD-007 C20orf43|CDAO5|HSPC164|SHUJUN-3 HGNC:15890|Ensembl:ENSG00000022277|HPRD:12769|Vega:OTTHUMG00000032801 20 20q13.31 replication termination factor 2 domain containing 1 protein-coding RTFDC1 replication termination factor 2 domain containing 1 O UPF0549 protein C20orf43 20121230 -9606 51510 CHMP5 CGI-34 C9orf83|HSPC177|PNAS-2|SNF7DC2|Vps60 HGNC:26942|MIM:610900|Ensembl:ENSG00000086065|HPRD:15408|Vega:OTTHUMG00000019765 9 9p13.3 charged multivesicular body protein 5 protein-coding CHMP5 charged multivesicular body protein 5 O SNF7 domain containing 2|SNF7 domain-containing protein 2|apoptosis-related protein PNAS-2|chromatin modifying protein 5|chromatin-modifying protein 5|hVps60|vacuolar protein sorting-associated protein 60 20121230 -9606 51512 GTSE1 RP5-1163J1.2 B99 HGNC:13698|MIM:607477|Ensembl:ENSG00000075218|HPRD:09593|Vega:OTTHUMG00000150486 22 22q13.2-q13.3 G-2 and S-phase expressed 1 protein-coding GTSE1 G-2 and S-phase expressed 1 O G2 and S phase-expressed protein 1|protein B99 homolog 20121230 -9606 51513 ETV7 - TEL-2|TEL2|TELB HGNC:18160|MIM:605255|Ensembl:ENSG00000010030|HPRD:16095|Vega:OTTHUMG00000014594 6 6p21 ets variant 7 protein-coding ETV7 ets variant 7 O ETS translocation variant 7|ETS-related protein Tel2|Ets transcription factor TEL-2b|TEL2 oncogene|ets variant gene 7 (TEL2 oncogene)|tel-related Ets factor|transcription factor ETV7 20121230 -9606 51514 DTL RP11-15I11.1 CDT2|DCAF2|L2DTL|RAMP HGNC:30288|MIM:610617|Ensembl:ENSG00000143476|HPRD:17952|Vega:OTTHUMG00000037133 1 1q32 denticleless E3 ubiquitin protein ligase homolog (Drosophila) protein-coding DTL denticleless E3 ubiquitin protein ligase homolog (Drosophila) O DDB1 and CUL4 associated factor 2|DDB1- and CUL4-associated factor 2|RA regulated nuclear matrix associated protein|RA-regulated nuclear matrix-associated protein|denticleless homolog|denticleless protein homolog|lethal(2) denticleless protein homolog|retinoic acid-regulated nuclear matrix-associated protein 20121230 -9606 51517 NCKIPSD - AF3P21|DIP|DIP1|ORF1|SPIN90|WASLBP|WISH HGNC:15486|MIM:606671|Ensembl:ENSG00000213672|HPRD:09450|Vega:OTTHUMG00000133542 3 3p21 NCK interacting protein with SH3 domain protein-coding NCKIPSD NCK interacting protein with SH3 domain O 54 kDa VacA-interacting protein|54 kDa vimentin-interacting protein|90 kDa SH3 protein interacting with Nck|DIP-1|NCK-interacting protein with SH3 domain|SH3 adapter protein SPIN90|SH3 protein interacting with Nck, 90 kDa|VIP54|WASP-interacting SH3-domain protein|dia interacting protein|dia-interacting protein 1|diaphanous protein interacting protein|diaphanous protein-interacting protein|wiskott-Aldrich syndrome protein-interacting protein 20121230 -9606 51520 LARS - HSPC192|LARS1|LEURS|LEUS|LRS|PIG44|RNTLS|hr025Cl HGNC:6512|MIM:151350|Ensembl:ENSG00000133706|HPRD:01042|Vega:OTTHUMG00000163429 5 5q32 leucyl-tRNA synthetase protein-coding LARS leucyl-tRNA synthetase O cytoplasmic leucyl-tRNA synthetase|cytosolic leucyl-tRNA synthetase|leucine tRNA ligase 1, cytoplasmic|leucine translase|leucine--tRNA ligase, cytoplasmic|leucine-tRNA ligase|leucyl-tRNA synthetase, cytoplasmic|proliferation-inducing gene 44 20121230 -9606 51522 TMEM14C HSPC194 C6orf53|MSTP073|NET26|bA421M1.6 HGNC:20952|Ensembl:ENSG00000111843|HPRD:15524|Vega:OTTHUMG00000014242 6 6p24.2 transmembrane protein 14C protein-coding TMEM14C transmembrane protein 14C O - 20121230 -9606 51523 CXXC5 HSPC195 CF5|RINF|WID HGNC:26943|MIM:612752|Ensembl:ENSG00000171604|HPRD:13105|Vega:OTTHUMG00000163331 5 5q31.2 CXXC finger protein 5 protein-coding CXXC5 CXXC finger protein 5 O CXXC finger 5 protein|CXXC-type zinc finger protein 5|WT1-induced Inhibitor of Dishevelled|putative MAPK-activating protein PM08|putative NF-kappa-B-activating protein 102|retinoid-inducible nuclear factor 20121230 -9606 51524 TMEM138 HSPC196 - HGNC:26944|MIM:614459|Ensembl:ENSG00000149483|HPRD:13713|Vega:OTTHUMG00000168145 11 11q12.2 transmembrane protein 138 protein-coding TMEM138 transmembrane protein 138 O - 20121230 -9606 51526 C20orf111 BM-038 HSPC207|Osr1|Perit1|dJ1183I21.1 HGNC:16105|Ensembl:ENSG00000132823|HPRD:12739|Vega:OTTHUMG00000032518 20 20q13.11 chromosome 20 open reading frame 111 protein-coding C20orf111 chromosome 20 open reading frame 111 O oxidative stress-responsive 1|peroxide-inducible transcript 1|uncharacterized protein C20orf111 20121230 -9606 51527 GSKIP HSPC210 C14orf129 HGNC:20343|Ensembl:ENSG00000100744|HPRD:16601|Vega:OTTHUMG00000171420 14 14q32.2 GSK3B interacting protein protein-coding GSKIP GSK3B interacting protein O GSK3-beta interaction protein 20121230 -9606 51528 JKAMP CDA06 C14orf100|HSPC213|HSPC327|JAMP HGNC:20184|MIM:611176|Ensembl:ENSG00000050130|HPRD:12623|Vega:OTTHUMG00000171054 14 14q23.1 JNK1/MAPK8-associated membrane protein protein-coding JKAMP JNK1/MAPK8-associated membrane protein O JNK-associated membrane protein|JNK1-associated membrane protein|Jun N-terminal kinase 1-associated membrane protein|medulloblastoma antigen MU-MB-50.4 20121230 -9606 51529 ANAPC11 HSPC214 APC11|Apc11p HGNC:14452|MIM:614534|Ensembl:ENSG00000141552|HPRD:12452|Vega:OTTHUMG00000177982 17 17q25.3 anaphase promoting complex subunit 11 protein-coding ANAPC11 anaphase promoting complex subunit 11 O APC11 anaphase promoting complex subunit 11 homolog|anaphase promoting complex subunit 11 (yeast APC11 homolog)|anaphase-promoting complex subunit 11|cyclosome subunit 11|hepatocellular carcinoma-associated RING finger protein 20121230 -9606 51530 ZC3HC1 HSPC216 1110054L24Rik|NIPA HGNC:29913|Ensembl:ENSG00000091732|Vega:OTTHUMG00000157648 7 7q32.2 zinc finger, C3HC-type containing 1 protein-coding ZC3HC1 zinc finger, C3HC-type containing 1 O hNIPA|hematopoietic stem/progenitor cell protein 216|nuclear interacting partner of anaplastic lymphoma kinase (ALK)|nuclear interaction partner of ALK|nuclear-interacting partner of ALK|nuclear-interacting partner of anaplastic lymphoma kinase|zinc finger C3HC-type protein 1|zinc finger, C3HC type 1 20121230 -9606 51531 C9orf156 RP11-23B15.3 HSPC219|NAP1 HGNC:30967|Ensembl:ENSG00000136932|HPRD:12945|Vega:OTTHUMG00000021007 9 9q22.33 chromosome 9 open reading frame 156 protein-coding C9orf156 chromosome 9 open reading frame 156 O Nef (lentivirus myristoylated factor) associated protein 1|Nef associated protein 1|nef-associated protein 1|thioesterase NAP1 20121230 -9606 51533 PHF7 - HSPC045|HSPC226|NYD-SP6 HGNC:18458|Ensembl:ENSG00000010318|HPRD:15127|Vega:OTTHUMG00000158495 3 3p21.1 PHD finger protein 7 protein-coding PHF7 PHD finger protein 7 O testis development protein NYD-SP6 20121230 -9606 51534 VTA1 HSPC228 C6orf55|DRG-1|DRG1|LIP5|My012|SBP1 HGNC:20954|MIM:610902|Ensembl:ENSG00000009844|HPRD:09855|Vega:OTTHUMG00000015707 6 6q24.1 Vps20-associated 1 homolog (S. cerevisiae) protein-coding VTA1 Vps20-associated 1 homolog (S. cerevisiae) O LYST-interacting protein 5|SKD1-binding protein 1|dopamine-responsive gene 1 protein|homolog of mouse SKD1-binding protein 1|vacuolar protein sorting-associated protein VTA1 homolog 20121230 -9606 51535 PPHLN1 HSPC206 HSPC232 HGNC:19369|MIM:608150|Ensembl:ENSG00000134283|HPRD:10488|Vega:OTTHUMG00000169440 12 12q12 periphilin 1 protein-coding PPHLN1 periphilin 1 O gastric cancer antigen Ga50|periphilin-1 20121230 -9606 51537 MTFP1 HSPC242 MTP18 HGNC:26945|MIM:610235|Ensembl:ENSG00000242114|HPRD:17612|Vega:OTTHUMG00000151057 22 22q mitochondrial fission process 1 protein-coding MTFP1 mitochondrial fission process 1 O mitochondrial 18 kDa protein|mitochondrial fission process protein 1|mitochondrial fission protein MTP18|mitochondrial protein 18 kDa 20121230 -9606 51538 ZCCHC17 HSPC243 HSPC251|PS1D|RP11-266K22.1|pNO40 HGNC:30246|Ensembl:ENSG00000121766|HPRD:15189|Vega:OTTHUMG00000003791 1 1p35.2 zinc finger, CCHC domain containing 17 protein-coding ZCCHC17 zinc finger, CCHC domain containing 17 O nucleolar protein 40|nucleolar protein of 40 kDa|pnn-interacting nucleolar protein|putative S1 RNA binding domain protein|putative S1 RNA-binding domain protein|zinc finger CCHC domain-containing protein 17 20121230 -9606 51540 SCLY - SCL|hSCL HGNC:18161|MIM:611056|Ensembl:ENSG00000132330|HPRD:15303|Vega:OTTHUMG00000133336 2 2q37.3 selenocysteine lyase protein-coding SCLY selenocysteine lyase O - 20121230 -9606 51542 VPS54 - HCC8|SLP-8p|VPS54L|WR|hVps54L HGNC:18652|MIM:614633|Ensembl:ENSG00000143952|HPRD:10302|Vega:OTTHUMG00000152627 2 2p13-p14 vacuolar protein sorting 54 homolog (S. cerevisiae) protein-coding VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) O hepatocellular carcinoma protein 8|tumor antigen HOM-HCC-8|tumor antigen SLP-8p|vacuolar protein sorting-associated protein 54 20121230 -9606 51545 ZNF581 HSPC189 - HGNC:25017|Ensembl:ENSG00000171425|HPRD:15858|Vega:OTTHUMG00000180869 19 19q13.42 zinc finger protein 581 protein-coding ZNF581 zinc finger protein 581 O - 20121230 -9606 51547 SIRT7 - SIR2L7 HGNC:14935|MIM:606212|Ensembl:ENSG00000187531|HPRD:12094|Vega:OTTHUMG00000177957 17 17q25 sirtuin 7 protein-coding SIRT7 sirtuin 7 O NAD-dependent deacetylase sirtuin-7|NAD-dependent protein deacetylase sirtuin-7|SIR2-like protein 7|regulatory protein SIR2 homolog 7|silent mating type information regulation 2, S.cerevisiae, homolog 7|sir2-related protein type 7|sirtuin type 7 20121230 -9606 51548 SIRT6 - SIR2L6 HGNC:14934|MIM:606211|Ensembl:ENSG00000077463|HPRD:12093 19 19p13.3 sirtuin 6 protein-coding SIRT6 sirtuin 6 O NAD-dependent deacetylase sirtuin-6|NAD-dependent protein deacetylase sirtuin-6|SIR2-like protein 6|regulatory protein SIR2 homolog 6|sir2-related protein type 6|sirtuin type 6 20121230 -9606 51550 CINP - - HGNC:23789|MIM:613362|Ensembl:ENSG00000100865|HPRD:16715|Vega:OTTHUMG00000171775 14 14q32.31 cyclin-dependent kinase 2 interacting protein protein-coding CINP cyclin-dependent kinase 2 interacting protein O CDK2-interacting protein|cyclin-dependent kinase 2-interacting protein 20121230 -9606 51552 RAB14 RP11-165P4.4 FBP|RAB-14 HGNC:16524|MIM:612673|Ensembl:ENSG00000119396|HPRD:06693|Vega:OTTHUMG00000020582 9 9q32-q34.11 RAB14, member RAS oncogene family protein-coding RAB14 RAB14, member RAS oncogene family O F protein-binding protein 1|bA165P4.3 (member RAS oncogene family)|ras-related protein Rab-14|small GTP binding protein RAB14 20121230 -9606 51554 CCRL1 - CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 HGNC:1611|MIM:606065|Ensembl:ENSG00000129048|HPRD:07298|Vega:OTTHUMG00000159768 3 3q22 chemokine (C-C motif) receptor-like 1 protein-coding CCRL1 chemokine (C-C motif) receptor-like 1 O C-C CKR-11|C-C chemokine receptor type 11|CC chemokine receptor-like 1|chemocentryx chemokine receptor|chemokine, cc motif, receptor-like protein 1|orphan seven-transmembrane receptor, chemokine related 20121230 -9606 51555 PEX5L - PEX5R|PEX5RP|PXR2|PXR2B HGNC:30024|MIM:611058|Ensembl:ENSG00000114757|HPRD:11425|Vega:OTTHUMG00000157363 3 3q26.33 peroxisomal biogenesis factor 5-like protein-coding PEX5L peroxisomal biogenesis factor 5-like O PEX2-related protein|PEX5-like protein|PEX5-related protein|Pex5p-related protein|peroxin-5-related protein|peroxisome biogenesis factor 5-like 20121230 -9606 51557 LGSN - GLULD1|LGS HGNC:21016|MIM:611470|Ensembl:ENSG00000146166|HPRD:13585|Vega:OTTHUMG00000014946 6 6pter-q22.33 lengsin, lens protein with glutamine synthetase domain protein-coding LGSN lengsin, lens protein with glutamine synthetase domain O glutamate-ammonia ligase (glutamine synthase) domain containing 1|glutamate-ammonia ligase domain-containing protein 1|lengsin 20121230 -9606 51559 NT5DC3 - TU12B1-TY|TU12B1TY HGNC:30826|MIM:611076|Ensembl:ENSG00000111696|HPRD:18241|Vega:OTTHUMG00000157017 12 12q22-q23.1 5'-nucleotidase domain containing 3 protein-coding NT5DC3 5'-nucleotidase domain containing 3 O 5'-nucleotidase domain-containing protein 3 20121230 -9606 51560 RAB6B - - HGNC:14902|Ensembl:ENSG00000154917|HPRD:11474|Vega:OTTHUMG00000159749 3 3q22.1 RAB6B, member RAS oncogene family protein-coding RAB6B RAB6B, member RAS oncogene family O ras-related protein Rab-6B|small GTP-binding protein|small GTPase RAB6B 20121230 -9606 51561 IL23A UNQ2498/PRO5798 IL-23|IL-23A|IL23P19|P19|SGRF HGNC:15488|MIM:605580|Ensembl:ENSG00000110944|HPRD:12026 12 12q13.3 interleukin 23, alpha subunit p19 protein-coding IL23A interleukin 23, alpha subunit p19 O IL-23 subunit alpha|IL-23-A|IL-23p19|JKA3 induced upon T-cell activation|interleukin 23 p19 subunit|interleukin-23 subunit alpha|interleukin-23 subunit p19|interleukin-six, G-CSF related factor 20121230 -9606 51562 MBIP BM-015 - HGNC:20427|MIM:609431|Ensembl:ENSG00000151332|HPRD:14368|Vega:OTTHUMG00000140222 14 14q13.3 MAP3K12 binding inhibitory protein 1 protein-coding MBIP MAP3K12 binding inhibitory protein 1 O MAP3K12-binding inhibitory protein 1|MAPK upstream kinase-binding inhibitory protein|MUK-binding inhibitory protein 20121230 -9606 51564 HDAC7 - HD7A|HDAC7A HGNC:14067|MIM:606542|Ensembl:ENSG00000061273|HPRD:09133|Vega:OTTHUMG00000152968 12 12q13.1 histone deacetylase 7 protein-coding HDAC7 histone deacetylase 7 O HD7|histone deacetylase 7A 20121230 -9606 51566 ARMCX3 RP4-545K15.2 ALEX3|dJ545K15.2 HGNC:24065|MIM:300364|Ensembl:ENSG00000102401|HPRD:02294|Vega:OTTHUMG00000022035 X Xq22.1 armadillo repeat containing, X-linked 3 protein-coding ARMCX3 armadillo repeat containing, X-linked 3 O 1200004E24Rik|ARM protein lost in epithelial cancers on chromosome X 3|arm protein lost in epithelial cancers, X chromosome, 3|armadillo repeat-containing X-linked protein 3 20121230 -9606 51567 TDP2 RP1-30M3.3 AD022|EAP2|EAPII|TTRAP|dJ30M3.3|hTDP2 HGNC:17768|MIM:605764|Ensembl:ENSG00000111802|HPRD:05771|Vega:OTTHUMG00000014360 6 6p22.3-p22.1 tyrosyl-DNA phosphodiesterase 2 protein-coding TDP2 tyrosyl-DNA phosphodiesterase 2 O 5'-Tyr-DNA phosphodiesterase|5'-tyrosyl-DNA phosphodiesterase|ETS1-associated protein 2|ETS1-associated protein II|TRAF and TNF receptor associated protein|TRAF and TNF receptor-associated protein|VPg unlinkase|tyr-DNA phosphodiesterase 2|tyrosyl-RNA phosphodiesterase 20121230 -9606 51569 UFM1 RP11-131P10.1 BM-002|C13orf20|bA131P10.1 HGNC:20597|MIM:610553|Ensembl:ENSG00000120686|HPRD:15644|Vega:OTTHUMG00000017409 13 13q13.3 ubiquitin-fold modifier 1 protein-coding UFM1 ubiquitin-fold modifier 1 O - 20121230 -9606 51571 FAM49B BM-009 L1 HGNC:25216|Ensembl:ENSG00000153310|HPRD:13313|Vega:OTTHUMG00000164805 8 8q24.21 family with sequence similarity 49, member B protein-coding FAM49B family with sequence similarity 49, member B O protein FAM49B 20121230 -9606 51573 GDE1 - 363E6.2|MIR16 HGNC:29644|MIM:605943|Ensembl:ENSG00000006007|HPRD:12070|Vega:OTTHUMG00000131454 16 16p12-p11.2 glycerophosphodiester phosphodiesterase 1 protein-coding GDE1 glycerophosphodiester phosphodiesterase 1 O RGS16-interacting membrane protein|membrane interacting protein of RGS16|membrane-interacting protein of RGS16 20121230 -9606 51574 LARP7 HDCMA18P PIP7S HGNC:24912|MIM:612026|Ensembl:ENSG00000174720|HPRD:17095|Vega:OTTHUMG00000132909 4 4q25 La ribonucleoprotein domain family, member 7 protein-coding LARP7 La ribonucleoprotein domain family, member 7 O P-TEFb-interaction protein for 7SK stability|la-related protein 7 20121230 -9606 51575 ESF1 HDCMC28P ABTAP|C20orf6|bA526K24.1 HGNC:15898|Ensembl:ENSG00000089048|HPRD:10732|Vega:OTTHUMG00000031906 20 20p12.1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) protein-coding ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) O ABT1-associated protein|ESF1 homolog 20121230 -9606 51581 ERVH-6 - - HGNC:39058 Y Yq11.223 endogenous retrovirus group H, member 6 unknown ERVH-6 endogenous retrovirus group H, member 6 O - 20121017 -9606 51582 AZIN1 - OAZI|OAZIN|ODC1L HGNC:16432|MIM:607909|Ensembl:ENSG00000155096|HPRD:07443|Vega:OTTHUMG00000164766 8 8q22.3 antizyme inhibitor 1 protein-coding AZIN1 antizyme inhibitor 1 O AZI|ornithine decarboxylase antizyme inhibitor 20121230 -9606 51585 PCF11 - - HGNC:30097|MIM:608876|Ensembl:ENSG00000165494|HPRD:10592|Vega:OTTHUMG00000167031 11 11q13 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) protein-coding PCF11 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) O PCF11, cleavage and polyadenylation factor II subunit, homolog|PCF11p homolog|pre-mRNA cleavage complex 2 protein Pcf11|pre-mRNA cleavage complex II protein Pcf11 20121230 -9606 51586 MED15 - ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 HGNC:14248|MIM:607372|Ensembl:ENSG00000099917|HPRD:12117|Vega:OTTHUMG00000150810 22 22q11.2 mediator complex subunit 15 protein-coding MED15 mediator complex subunit 15 O CTG repeat protein 7a|PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein|PC2 glutamine/Q-rich-associated protein|PC2-glutamine-rich-associated protein|TPA inducible gene-1|TPA inducible protein|TPA-inducible gene 1 protein|activator-recruited cofactor 105 kDa component|activator-recruited cofactor, 105-kD|mediator of RNA polymerase II transcription subunit 15|positive cofactor 2 glutamine/Q-rich-associated protein|positive cofactor 2, glutamine/Q-rich-associated protein|trinucleotide repeat containing 7|trinucleotide repeat-containing gene 7 protein 20121230 -9606 51588 PIAS4 - PIASY|Piasg|ZMIZ6 HGNC:17002|MIM:605989|Ensembl:ENSG00000105229|HPRD:06910 19 19p13.3 protein inhibitor of activated STAT, 4 protein-coding PIAS4 protein inhibitor of activated STAT, 4 O E3 SUMO-protein ligase PIAS4|PIAS-gamma|protein inhibitor of activated STAT protein 4|protein inhibitor of activated STAT protein PIASy|protein inhibitor of activated STAT protein gamma|zinc finger, MIZ-type containing 6 20121230 -9606 51592 TRIM33 - ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA HGNC:16290|MIM:605769|Ensembl:ENSG00000197323|HPRD:10423|Vega:OTTHUMG00000011891 1 1p13.1 tripartite motif containing 33 protein-coding TRIM33 tripartite motif containing 33 O E3 ubiquitin-protein ligase TRIM33|RET-fused gene 7 protein|TIF1-gamma|ectodermin homolog|protein Rfg7|transcriptional intermediary factor 1 gamma|tripartite motif-containing 33 20121230 -9606 51593 SRRT - ARS2|ASR2|serrate HGNC:24101|MIM:614469|Ensembl:ENSG00000087087|HPRD:10665|Vega:OTTHUMG00000157031 7 7q21 serrate RNA effector molecule homolog (Arabidopsis) protein-coding SRRT serrate RNA effector molecule homolog (Arabidopsis) O arsenate resistance protein 2|arsenate resistance protein ARS2|arsenite resistance protein|arsenite-resistance protein 2|serrate RNA effector molecule homolog 20121230 -9606 51594 NBAS - NAG|SOPH HGNC:15625|MIM:608025|Ensembl:ENSG00000151779|HPRD:10473|Vega:OTTHUMG00000121153 2 2p24 neuroblastoma amplified sequence protein-coding NBAS neuroblastoma amplified sequence O NAG/BC035112 fusion|NAG/FAM49A fusion|neuroblastoma-amplified gene protein|neuroblastoma-amplified sequence 20121230 -9606 51596 CUTA DASS-97D12.5 ACHAP|C6orf82 HGNC:21101|Ensembl:ENSG00000112514|HPRD:12902|Vega:OTTHUMG00000031254 6 6p21.32 cutA divalent cation tolerance homolog (E. coli) protein-coding CUTA cutA divalent cation tolerance homolog (E. coli) O acetylcholinesterase-associated protein|brain acetylcholinesterase putative membrane anchor|divalent cation tolerant protein CUTA|protein CutA 20121230 -9606 51599 LSR - ILDR3|LISCH7 HGNC:29572|Ensembl:ENSG00000105699|HPRD:17283 19 19q13.12 lipolysis stimulated lipoprotein receptor protein-coding LSR lipolysis stimulated lipoprotein receptor O LISCH protein|immunoglobulin-like domain containing receptor 3|lipolysis-stimulated lipoprotein receptor|lipolysis-stimulated remnant|liver-specific bHLH-Zip transcription factor 20121230 -9606 51601 LIPT1 - - HGNC:29569|MIM:610284|Ensembl:ENSG00000144182|HPRD:17282|Vega:OTTHUMG00000130640 2 2q11.2 lipoyltransferase 1 protein-coding LIPT1 lipoyltransferase 1 O lipoate biosynthesis protein|lipoyl ligase|lipoyltransferase 1, mitochondrial 20121230 -9606 51602 NOP58 HSPC120 NOP5|NOP5/NOP58 HGNC:29926|Ensembl:ENSG00000055044|HPRD:11036|Vega:OTTHUMG00000132840 2 2q33.1 NOP58 ribonucleoprotein protein-coding NOP58 NOP58 ribonucleoprotein O NOP58 ribonucleoprotein homolog|nucleolar protein 5|nucleolar protein 58|nucleolar protein NOP5/NOP58 20121230 -9606 51603 METTL13 CGI-01 5630401D24Rik|KIAA0859|feat HGNC:24248|Ensembl:ENSG00000010165|HPRD:13821|Vega:OTTHUMG00000034912 1 1q24-q25.3 methyltransferase like 13 protein-coding METTL13 methyltransferase like 13 O antiapoptotic protein FEAT|methyltransferase-like protein 13 20121230 -9606 51604 PIGT CGI-06 NDAP HGNC:14938|MIM:610272|Ensembl:ENSG00000124155|HPRD:15136|Vega:OTTHUMG00000032574 20 20q12-q13.12 phosphatidylinositol glycan anchor biosynthesis, class T protein-coding PIGT phosphatidylinositol glycan anchor biosynthesis, class T O GPI transamidase component PIG-T|GPI transamidase subunit|neurotrophin-regulated neuronal development-associated protein|phosphatidylinositol-glycan biosynthesis class T protein 20121230 -9606 51605 TRMT6 CGI-09 GCD10|Gcd10p HGNC:20900|Ensembl:ENSG00000089195|HPRD:13027|Vega:OTTHUMG00000031816 20 20p12.3 tRNA methyltransferase 6 homolog (S. cerevisiae) protein-coding TRMT6 tRNA methyltransferase 6 homolog (S. cerevisiae) O tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6|tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6|tRNA(m1A58)-methyltransferase subunit TRM6|tRNA(m1A58)MTase subunit TRM6 20121230 -9606 51606 ATP6V1H CGI-11 MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 HGNC:18303|MIM:608861|Ensembl:ENSG00000047249|HPRD:10591|Vega:OTTHUMG00000164231 8 8q11.2 ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H protein-coding ATP6V1H ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H O V-ATPase 50/57 kDa subunits|V-ATPase subunit H|V-type proton ATPase subunit H|nef-binding protein 1|protein VMA13 homolog|vacuolar ATP synthase subunit H|vacuolar ATPase subunit H|vacuolar proton pump subunit H|vacuolar proton pump subunit SFD 20121230 -9606 51608 GET4 CGI-20 C7orf20|CEE|TRC35 HGNC:21690|MIM:612056|Ensembl:ENSG00000239857|HPRD:12909|Vega:OTTHUMG00000112459 7 7p22.3 golgi to ER traffic protein 4 homolog (S. cerevisiae) protein-coding GET4 golgi to ER traffic protein 4 homolog (S. cerevisiae) O Golgi to ER traffic protein 4 homolog|H_NH1244M04.5|conserved edge expressed protein|conserved edge protein|conserved edge-expressed protein|transmembrane domain recognition complex 35 kDa subunit|transmembrane domain recognition complex, 35kDa 20121230 -9606 51611 DPH5 AD-018 CGI-30|HSPC143|NPD015 HGNC:24270|MIM:611075|Ensembl:ENSG00000117543|HPRD:13037|Vega:OTTHUMG00000010829 1 1p21.2 DPH5 homolog (S. cerevisiae) protein-coding DPH5 DPH5 homolog (S. cerevisiae) O diphthamide biosynthesis methyltransferase|diphthine synthase|protein x 0011 20121230 -9606 51614 ERGIC3 RP3-477O4.1 C20orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2 HGNC:15927|Ensembl:ENSG00000125991|HPRD:15306|Vega:OTTHUMG00000032346 20 20pter-q12 ERGIC and golgi 3 protein-coding ERGIC3 ERGIC and golgi 3 O endoplasmic reticulum-Golgi intermediate compartment protein 3|endoplasmic reticulum-localized protein ERp43|serologically defined breast cancer antigen 84|serologically defined breast cancer antigen NY-BR-84 20121230 -9606 51616 TAF9B RP4-570L12.2 DN-7|DN7|TAF9L|TAFII31L|TFIID-31 HGNC:17306|MIM:300754|Ensembl:ENSG00000187325|HPRD:06739|Vega:OTTHUMG00000021887 X Xq13.1-q21.1 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa protein-coding TAF9B TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa O TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa|TBP-associated factor 9L|neuronal cell death-related protein 7|transcription associated factor TAFII31L|transcription initiation factor IID, 31kD subunit|transcription initiation factor TFIID subunit 9B|transcription-associated factor TAFII31L 20121230 -9606 51617 HMP19 - - Ensembl:ENSG00000170091|HPRD:13664|Vega:OTTHUMG00000130543 5 5q35.2 HMP19 protein protein-coding - - - NSG2|hypothalamus golgi apparatus expressed 19 kDa protein|neuron-specific protein family member 2|p19 protein|protein p19 20121230 -9606 51619 UBE2D4 - HBUCE1 HGNC:21647|Ensembl:ENSG00000078967|HPRD:14242|Vega:OTTHUMG00000128971 7 7p13 ubiquitin-conjugating enzyme E2D 4 (putative) protein-coding UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) O ubiquitin carrier protein D4|ubiquitin-conjugating enzyme E2 D4|ubiquitin-conjugating enzyme HBUCE1|ubiquitin-protein ligase D4 20121230 -9606 51621 KLF13 - BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 HGNC:13672|MIM:605328|Ensembl:ENSG00000169926|HPRD:05620|Vega:OTTHUMG00000172224 15 15q12 Kruppel-like factor 13 protein-coding KLF13 Kruppel-like factor 13 O BTE-binding protein 3|Krueppel-like factor 13|RANTES factor of late activated T lymphocytes-1|RANTES factor of late activated T-lymphocytes 1|Sp1 like zinc finger transcription factor|basic transcription element binding protein 3|basic transcription element-binding protein 3|novel Sp1-like zinc finger transcription factor 1|transcription factor BTEB3|transcription factor NSLP1 20121230 -9606 51622 CCZ1 CGI-43 C7orf28A|CCZ1A|H_DJ1163J12.2 HGNC:21691|Ensembl:ENSG00000122674|HPRD:12915|Vega:OTTHUMG00000155502 7 7p22.1 CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae) protein-coding CCZ1 CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae) O H_NH0577018.2|vacuolar fusion protein CCZ1 homolog 20121230 -9606 51626 DYNC2LI1 CGI-60 D2LIC|LIC3 HGNC:24595|Ensembl:ENSG00000138036|HPRD:13116|Vega:OTTHUMG00000128656 2 2p25.1-p24.1 dynein, cytoplasmic 2, light intermediate chain 1 protein-coding DYNC2LI1 dynein, cytoplasmic 2, light intermediate chain 1 O cytoplasmic dynein 2 light intermediate chain 1|dynein 2 light intermediate chain 20121230 -9606 51629 SLC25A39 CGI-69 CGI69 HGNC:24279|MIM:610820|Ensembl:ENSG00000013306|HPRD:13040|Vega:OTTHUMG00000132628 17 17q12 solute carrier family 25, member 39 protein-coding SLC25A39 solute carrier family 25, member 39 O solute carrier family 25 member 39 20121230 -9606 51631 LUC7L2 CGI-59 CGI-74|LUC7B2 HGNC:21608|MIM:613056|Ensembl:ENSG00000146963|HPRD:17456|Vega:OTTHUMG00000151717 7 7q34 LUC7-like 2 (S. cerevisiae) protein-coding LUC7L2 LUC7-like 2 (S. cerevisiae) O putative RNA-binding protein Luc7-like 2 20121230 -9606 51633 OTUD6B CGI-77 DUBA5 HGNC:24281|MIM:612021|Ensembl:ENSG00000155100|HPRD:13041|Vega:OTTHUMG00000150758 8 8q21.3 OTU domain containing 6B protein-coding OTUD6B OTU domain containing 6B O DUBA-5|OTU domain-containing protein 6B 20121230 -9606 51634 RBMX2 RP1-20I3.2 CGI-79 HGNC:24282|Ensembl:ENSG00000134597|HPRD:06470|Vega:OTTHUMG00000022395 X Xq26.1 RNA binding motif protein, X-linked 2 protein-coding RBMX2 RNA binding motif protein, X-linked 2 O RNA-binding motif protein, X-linked 2 20121230 -9606 51635 DHRS7 CGI-86 SDR34C1|retDSR4|retSDR4 HGNC:21524|MIM:612833|Ensembl:ENSG00000100612|HPRD:16802|Vega:OTTHUMG00000140331 14 14q23.1 dehydrogenase/reductase (SDR family) member 7 protein-coding DHRS7 dehydrogenase/reductase (SDR family) member 7 O dehydrogenase/reductase SDR family member 7|retinal short-chain dehydrogenase/reductase 4|short chain dehydrogenase/reductase family 34C, member 1 20121230 -9606 51637 C14orf166 CGI-99 CGI99|CLE|CLE7|LCRP369|RLLM1 HGNC:23169|MIM:610858|Ensembl:ENSG00000087302|HPRD:16615|Vega:OTTHUMG00000152332 14 14q22.1 chromosome 14 open reading frame 166 protein-coding C14orf166 chromosome 14 open reading frame 166 O CLE7 homolog|RLL motif containing 1|UPF0568 protein C14orf166 20121230 -9606 51639 SF3B14 CGI-110 HSPC175|Ht006|P14|SAP14|SF3B14a MIM:607835|Ensembl:ENSG00000115128|HPRD:09702|Vega:OTTHUMG00000125499 2 2pter-p25.1 splicing factor 3B, 14 kDa subunit protein-coding - - - SF3b 14 kDa subunit|pre-mRNA branch site protein p14|spliceosome-associated protein, 14 kDa subunit 20121230 -9606 51642 MRPL48 CGI-118 HSPC290|L48MT|MRP-L48 HGNC:16653|MIM:611853|Ensembl:ENSG00000175581|HPRD:14767|Vega:OTTHUMG00000168048 11 11q13.4 mitochondrial ribosomal protein L48 protein-coding MRPL48 mitochondrial ribosomal protein L48 O 39S ribosomal protein L48, mitochondrial 20121230 -9606 51643 TMBIM4 CGI-119 GAAP|LFG4|S1R|ZPRO HGNC:24257|Ensembl:ENSG00000155957|Vega:OTTHUMG00000168973 12 12q14.1-q15 transmembrane BAX inhibitor motif containing 4 protein-coding TMBIM4 transmembrane BAX inhibitor motif containing 4 O Golgi anti-apoptotic protein|Z-protein|protein lifeguard 4|transmembrane BAX inhibitor motif-containing protein 4 20121230 -9606 51645 PPIL1 CGI-124 CYPL1|PPIase|hCyPX HGNC:9260|MIM:601301|Ensembl:ENSG00000137168|HPRD:03194|Vega:OTTHUMG00000014612 6 6p21.1 peptidylprolyl isomerase (cyclophilin)-like 1 protein-coding PPIL1 peptidylprolyl isomerase (cyclophilin)-like 1 O cyclophilin-related gene 1|peptidyl-prolyl cis-trans isomerase|peptidyl-prolyl cis-trans isomerase-like 1|rotamase PPIL1 20121230 -9606 51646 YPEL5 CGI-127 - HGNC:18329|MIM:609726|Ensembl:ENSG00000119801|HPRD:18312|Vega:OTTHUMG00000097839 2 2p23.1 yippee-like 5 (Drosophila) protein-coding YPEL5 yippee-like 5 (Drosophila) O protein yippee-like 5 20121230 -9606 51647 FAM96B CGI-128 MIP18 HGNC:24261|MIM:614778|Ensembl:ENSG00000166595|HPRD:13033|Vega:OTTHUMG00000175408 16 16q22.1 family with sequence similarity 96, member B protein-coding FAM96B family with sequence similarity 96, member B O MSS19-interacting protein of 18 kDa|mitotic spindle-associated MMXD complex subunit MIP18 20121230 -9606 51649 MRPS23 CGI-138 HSPC329|MRP-S23 HGNC:14509|MIM:611985|Ensembl:ENSG00000181610|HPRD:17592|Vega:OTTHUMG00000178774 17 17q22-q23 mitochondrial ribosomal protein S23 protein-coding MRPS23 mitochondrial ribosomal protein S23 O 28S ribosomal protein S23, mitochondrial|S23mt 20121230 -9606 51650 MRPS33 CGI-139 MRP-S33|PTD003|S33mt HGNC:16634|MIM:611993|Ensembl:ENSG00000090263|HPRD:17598|Vega:OTTHUMG00000157456 7 7q34 mitochondrial ribosomal protein S33 protein-coding MRPS33 mitochondrial ribosomal protein S33 O 28S ribosomal protein S33, mitochondrial 20121230 -9606 51651 PTRH2 CGI-147 BIT1|PTH2 HGNC:24265|MIM:608625|Ensembl:ENSG00000141378|HPRD:12273|Vega:OTTHUMG00000154532 17 17q23.1 peptidyl-tRNA hydrolase 2 protein-coding PTRH2 peptidyl-tRNA hydrolase 2 O PTH 2|bcl-2 inhibitor of transcription 1|peptidyl-tRNA hydrolase 2, mitochondrial 20121230 -9606 51652 CHMP3 CGI-149 NEDF|VPS24 HGNC:29865|MIM:610052|Ensembl:ENSG00000115561|HPRD:15650|Vega:OTTHUMG00000153189 2 2p11.2 charged multivesicular body protein 3 protein-coding CHMP3 charged multivesicular body protein 3 O 25.1 protein|CHMP family, member 3|chromatin-modifying protein 3|neuroendocrine differentiation factor|vacuolar protein sorting 24 homolog|vacuolar protein sorting-associated protein 24 20121230 -9606 51654 CDK5RAP1 RP5-1187J4.1 C20orf34|C42|CDK5RAP1.3|CDK5RAP1.4|CGI-05|HSPC167 HGNC:15880|MIM:608200|Ensembl:ENSG00000101391|HPRD:12189|Vega:OTTHUMG00000032256 20 20pter-q11.23 CDK5 regulatory subunit associated protein 1 protein-coding CDK5RAP1 CDK5 regulatory subunit associated protein 1 O CDK5 activator-binding protein C42|CDK5 regulatory subunit-associated protein 1 20121230 -9606 51655 RASD1 - AGS1|DEXRAS1|MGC:26290 HGNC:15828|MIM:605550|Ensembl:ENSG00000108551|HPRD:08958|Vega:OTTHUMG00000059292 17 17p11.2 RAS, dexamethasone-induced 1 protein-coding RASD1 RAS, dexamethasone-induced 1 O activator of G-protein signaling 1|dexamethasone-induced Ras-related protein 1|ras-related protein 20121230 -9606 51657 STYXL1 - DUSP24|MK-STYX HGNC:18165|Ensembl:ENSG00000127952|HPRD:13256|Vega:OTTHUMG00000130459 7 7q11.23 serine/threonine/tyrosine interacting-like 1 protein-coding STYXL1 serine/threonine/tyrosine interacting-like 1 O dual specificity phosphatase 24 (putative)|dual specificity phosphatase inhibitor MK-STYX|dual specificity protein phosphatase 24|map kinase phosphatase-like protein MK-STYX|serine/threonine/tyrosine-interacting-like protein 1 20121230 -9606 51659 GINS2 CGI-122 HSPC037|PSF2|Pfs2 HGNC:24575|MIM:610609|Ensembl:ENSG00000131153|HPRD:15197|Vega:OTTHUMG00000137646 16 16q24.1 GINS complex subunit 2 (Psf2 homolog) protein-coding GINS2 GINS complex subunit 2 (Psf2 homolog) O DNA replication complex GINS protein PSF2 20121230 -9606 51660 MPC1 CGI-129 BRP44L|MPYCD|dJ68L15.3 HGNC:21606|MIM:614738|Ensembl:ENSG00000060762|HPRD:07091|Vega:OTTHUMG00000015999 6 6q27 mitochondrial pyruvate carrier 1 protein-coding MPC1 mitochondrial pyruvate carrier 1 O HSPC040 protein|brain protein 44-like protein 20121230 -9606 51661 FKBP7 UNQ670/PRO1304 FKBP23|PPIase HGNC:3723|MIM:607062|Ensembl:ENSG00000079150|HPRD:08451|Vega:OTTHUMG00000132577 2 2q31.2 FK506 binding protein 7 protein-coding FKBP7 FK506 binding protein 7 O 23 kDa FK506-binding protein|23 kDa FKBP|FK506-binding protein 23|FK506-binding protein 7|FKBP-23|FKBP-7|PPIase FKBP7|peptidyl-prolyl cis-trans isomerase FKBP7|rotamase 20121230 -9606 51663 ZFR - ZFR1 HGNC:17277|Ensembl:ENSG00000056097|HPRD:15730|Vega:OTTHUMG00000161979 5 5p13.3 zinc finger RNA binding protein protein-coding ZFR zinc finger RNA binding protein O M-phase phosphoprotein homolog|hZFR|zinc finger RNA-binding protein 20121230 -9606 51665 ASB1 - ASB-1 HGNC:16011|MIM:605758|Ensembl:ENSG00000065802|HPRD:05767|Vega:OTTHUMG00000152866 2 2q37 ankyrin repeat and SOCS box containing 1 protein-coding ASB1 ankyrin repeat and SOCS box containing 1 O ankyrin repeat and SOCS box protein 1|ankyrin repeat and SOCS box-containing 1 20121230 -9606 51666 ASB4 - ASB-4 HGNC:16009|MIM:605761|Ensembl:ENSG00000005981|HPRD:05770|Vega:OTTHUMG00000153960 7 7q21-q22 ankyrin repeat and SOCS box containing 4 protein-coding ASB4 ankyrin repeat and SOCS box containing 4 O ankyrin repeat and SOCS box protein 4|ankyrin repeat and SOCS box-containing 4 20121230 -9606 51667 NUB1 - BS4|NUB1L|NYREN18 HGNC:17623|MIM:607981|Ensembl:ENSG00000013374|HPRD:07450|Vega:OTTHUMG00000157365 7 7q36 negative regulator of ubiquitin-like proteins 1 protein-coding NUB1 negative regulator of ubiquitin-like proteins 1 O NEDD8 ultimate buster 1|NEDD8 ultimate buster-1|renal carcinoma antigen NY-REN-18 20121230 -9606 51668 HSPB11 HSPC034 C1orf41|HSPCO34|IFT25|PP25 HGNC:25019|Ensembl:ENSG00000081870|Vega:OTTHUMG00000008408 1 1p32 heat shock protein family B (small), member 11 protein-coding HSPB11 heat shock protein family B (small), member 11 O heat shock protein beta-11|intraflagellar transport 25 homolog|placental protein 25 20121230 -9606 51669 TMEM66 HSPC035 FOAP-7|SARAF|XTP3 HGNC:28789|MIM:614768|Ensembl:ENSG00000133872|HPRD:08651|Vega:OTTHUMG00000133397 8 8p12 transmembrane protein 66 protein-coding TMEM66 transmembrane protein 66 O HBV X-transactivated gene 3 protein|HBV XAg-transactivated protein 3|SARAF long isoform|SARAF short isoform|SOCE-associated regulatory factor|protein FOAP-7|store-operated calcium entry-associated regulatory factor 20121230 -9606 51673 TPPP3 CGI-38 p20|p25gamma HGNC:24162|Ensembl:ENSG00000159713|HPRD:16710|Vega:OTTHUMG00000137516 16 16q22.1 tubulin polymerization-promoting protein family member 3 protein-coding TPPP3 tubulin polymerization-promoting protein family member 3 O TPPP/p20|brain specific protein 20121230 -9606 51676 ASB2 - ASB-2 HGNC:16012|MIM:605759|Ensembl:ENSG00000100628|HPRD:05768|Vega:OTTHUMG00000171298 14 14q31-q32 ankyrin repeat and SOCS box containing 2 protein-coding ASB2 ankyrin repeat and SOCS box containing 2 O ankyrin repeat and SOCS box protein 2|ankyrin repeat and SOCS box-containing protein 2a 20121230 -9606 51678 MPP6 - PALS2|VAM-1|VAM1|p55T HGNC:18167|MIM:606959|Ensembl:ENSG00000105926|HPRD:09509|Vega:OTTHUMG00000023507 7 7p15 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) protein-coding MPP6 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) O MAGUK p55 subfamily member 6|MAGUK protein p55T|VELI-associated MAGUK 1|protein associated with Lin7 2 20121230 -9606 51684 SUFU RP11-47A8.1 PRO1280|SUFUH|SUFUXL HGNC:16466|MIM:607035|Ensembl:ENSG00000107882|HPRD:06124|Vega:OTTHUMG00000018966 10 10q24.32 suppressor of fused homolog (Drosophila) protein-coding SUFU suppressor of fused homolog (Drosophila) O suppressor of fused homolog 20121230 -9606 51686 OAZ3 RP11-98D18.13-004 AZ3|OAZ-t|TISP15 HGNC:8097|MIM:605138|Ensembl:ENSG00000143450|HPRD:18670|Vega:OTTHUMG00000013061 1 1q21.3 ornithine decarboxylase antizyme 3 protein-coding OAZ3 ornithine decarboxylase antizyme 3 O ODC-Az 3|antizyme 3 20121230 -9606 51690 LSM7 - YNL147W HGNC:20470|MIM:607287|Ensembl:ENSG00000130332|HPRD:06287|Vega:OTTHUMG00000180441 19 19p13.3 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) O U6 snRNA-associated Sm-like protein LSm7 20121230 -9606 51691 NAA38 - LSM8 HGNC:20471|MIM:607288|Ensembl:ENSG00000128534|HPRD:06288|Vega:OTTHUMG00000156956 7 7q31.1-q31.3 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding NAA38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit O LSM8 homolog, U6 small nuclear RNA associated|MAK31-like protein|N-alpha-acetyltransferase 38, NatC auxiliary subunit|U6 snRNA-associated Sm-like protein LSm8 20121230 -9606 51692 CPSF3 - CPSF-73|CPSF73 HGNC:2326|MIM:606029|Ensembl:ENSG00000119203|HPRD:05825|Vega:OTTHUMG00000090415 2 2p25.1 cleavage and polyadenylation specific factor 3, 73kDa protein-coding CPSF3 cleavage and polyadenylation specific factor 3, 73kDa O cleavage and polyadenylation specificity factor subunit 3|mRNA 3'-end-processing endonuclease CPSF-73 20121230 -9606 51693 TRAPPC2L - HSPC176 HGNC:30887|MIM:610970|Ensembl:ENSG00000167515|HPRD:13711|Vega:OTTHUMG00000137861 16 16q24.3 trafficking protein particle complex 2-like protein-coding TRAPPC2L trafficking protein particle complex 2-like O hematopoietic stem/progenitor cells 176|trafficking protein particle complex subunit 2-like protein 20121230 -9606 51696 HECA - HDC|HDCL|HHDC|dJ225E12.1 HGNC:21041|MIM:607977|Ensembl:ENSG00000112406|HPRD:16265|Vega:OTTHUMG00000015686 6 6q23-q24 headcase homolog (Drosophila) protein-coding HECA headcase homolog (Drosophila) O headcase protein homolog 20121230 -9606 51699 VPS29 DC7 DC15|PEP11 HGNC:14340|MIM:606932|Ensembl:ENSG00000111237|HPRD:09499|Vega:OTTHUMG00000169527 12 12q24 vacuolar protein sorting 29 homolog (S. cerevisiae) protein-coding VPS29 vacuolar protein sorting 29 homolog (S. cerevisiae) O PEP11 homolog|hVPS29|retromer protein|vacuolar protein sorting-associated protein 29|vacuolar sorting protein VPS29/PEP11|vesicle protein sorting 29|x 007 protein 20121230 -9606 51700 CYB5R2 - B5R.2 HGNC:24376|MIM:608342|Ensembl:ENSG00000166394|HPRD:06435|Vega:OTTHUMG00000165665 11 11p15.4 cytochrome b5 reductase 2 protein-coding CYB5R2 cytochrome b5 reductase 2 O NADH-cytochrome b5 reductase 2|cytochrome b5 reductase b5R.2 20121230 -9606 51701 NLK - - HGNC:29858|MIM:609476|Ensembl:ENSG00000087095|HPRD:17637|Vega:OTTHUMG00000132451 17 17q11.2 nemo-like kinase protein-coding NLK nemo-like kinase O serine/threonine-protein kinase NLK 20121230 -9606 51702 PADI3 hCG_25124 PAD3|PDI3 HGNC:18337|MIM:606755|Ensembl:ENSG00000142619|HPRD:08419|Vega:OTTHUMG00000002373 1 1p36.13 peptidyl arginine deiminase, type III protein-coding PADI3 peptidyl arginine deiminase, type III O peptidylarginine deiminase III|protein-arginine deiminase type III|protein-arginine deiminase type-3 20121230 -9606 51703 ACSL5 RP11-324O2.5 ACS2|ACS5|FACL5 HGNC:16526|MIM:605677|Ensembl:ENSG00000197142|HPRD:16139|Vega:OTTHUMG00000019060 10 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 protein-coding ACSL5 acyl-CoA synthetase long-chain family member 5 O FACL5 for fatty acid coenzyme A ligase 5|LACS 5|fatty acid coenzyme A ligase 5|fatty-acid-Coenzyme A ligase, long-chain 5|long-chain acyl-CoA synthetase 5|long-chain fatty acid coenzyme A ligase 5|long-chain-fatty-acid--CoA ligase 5 20121230 -9606 51704 GPRC5B - RAIG-2|RAIG2 HGNC:13308|MIM:605948|Ensembl:ENSG00000167191|HPRD:16177|Vega:OTTHUMG00000131460 16 16p12 G protein-coupled receptor, family C, group 5, member B protein-coding GPRC5B G protein-coupled receptor, family C, group 5, member B O A-69G12.1|G protein-coupled receptor, family C, group 1, member B|G-protein coupled receptor family C group 5 member B|retinoic acid responsive gene protein|retinoic acid-induced gene 2 protein 20121230 -9606 51705 EMCN - EMCN2|MUC14 HGNC:16041|MIM:608350|Ensembl:ENSG00000164035|HPRD:12220|Vega:OTTHUMG00000131051 4 4q24 endomucin protein-coding EMCN endomucin O MUC-14|endomucin-2|gastric cancer antigen Ga34|mucin-14 20121230 -9606 51706 CYB5R1 UNQ3049/PRO9865 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 HGNC:13397|MIM:608341|Ensembl:ENSG00000159348|HPRD:06434|Vega:OTTHUMG00000041387 1 1q32.1 cytochrome b5 reductase 1 protein-coding CYB5R1 cytochrome b5 reductase 1 O NAD(P)H:quinone oxidoreductase type 3, polypeptide A2|NADH-cytochrome b5 reductase 1 20121230 -9606 51710 ZNF44 - GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 HGNC:13110|MIM:194542|Ensembl:ENSG00000197857|HPRD:01927|Vega:OTTHUMG00000156424 19 19p13.2 zinc finger protein 44 protein-coding ZNF44 zinc finger protein 44 O gonadotropin inducible transcription repressor-2|gonadotropin-inducible ovary transcription repressor 2|gonadotropin-inducible transcription repressor 2|zinc finger protein 55|zinc finger protein 58|zinc finger protein KOX7|zinc finger protein ZnFP12 20121230 -9606 51714 SELT UNQ150/PRO176 - MIM:607912|Ensembl:ENSG00000198843|HPRD:07446|Vega:OTTHUMG00000159825 3 3q25.1 selenoprotein T protein-coding - - - - 20121230 -9606 51715 RAB23 RP3-496N17.3 HSPC137 HGNC:14263|MIM:606144|Ensembl:ENSG00000112210|HPRD:05850|Vega:OTTHUMG00000014918 6 6p11 RAB23, member RAS oncogene family protein-coding RAB23 RAB23, member RAS oncogene family O RAB family small GTP binding protein RAB 23|ras-related protein Rab-23 20121230 -9606 51716 CES1P1 - CES1A2|CES1A3|CES4|CESR|PCE-3 HGNC:18546|HPRD:07009 16 16q12.2 carboxylesterase 1 pseudogene 1 pseudo CES1P1 carboxylesterase 1 pseudogene 1 O - 20121230 -9606 51719 CAB39 CGI-66 MO25 HGNC:20292|MIM:612174|Ensembl:ENSG00000135932|HPRD:10091|Vega:OTTHUMG00000133220 2 2q37.1 calcium binding protein 39 protein-coding CAB39 calcium binding protein 39 O MO25alpha|calcium-binding protein 39 20121230 -9606 51720 UIMC1 - RAP80|X2HRIP110 HGNC:30298|MIM:609433|Ensembl:ENSG00000087206|HPRD:11482|Vega:OTTHUMG00000130852 5 5q35.2 ubiquitin interaction motif containing 1 protein-coding UIMC1 ubiquitin interaction motif containing 1 O BRCA1-A complex subunit RAP80|receptor associated protein 80|receptor-associated protein 80|retinoid X receptor-interacting protein 110|retinoid x receptor interacting protein|ubiquitin interaction motif-containing protein 1 20121230 -9606 51725 FBXO40 - FBX40 HGNC:29816|MIM:609107|Ensembl:ENSG00000163833|HPRD:12368|Vega:OTTHUMG00000159410 3 3q13.33 F-box protein 40 protein-coding FBXO40 F-box protein 40 O F-box only protein 40|muscle disease-related protein 20121230 -9606 51726 DNAJB11 PSEC0121 ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PRO1080|UNQ537|hDj-9 HGNC:14889|MIM:611341|Ensembl:ENSG00000090520|HPRD:07485|Vega:OTTHUMG00000156614 3 3q27.3 DnaJ (Hsp40) homolog, subfamily B, member 11 protein-coding DNAJB11 DnaJ (Hsp40) homolog, subfamily B, member 11 O APOBEC1-binding protein 2|DnaJ protein 9|ER-associated DNAJ protein 3|ER-associated Hsp40 co-chaperone|PWP1-interacting protein 4|dnaJ homolog subfamily B member 11|dnaJ protein homolog 9|human DnaJ protein 9 20121230 -9606 51727 CMPK1 RP11-511I2.1 CMK|CMPK|UMK|UMP-CMPK|UMPK HGNC:18170|MIM:191710|Ensembl:ENSG00000162368|HPRD:18258|Vega:OTTHUMG00000007849 1 1p32 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic protein-coding CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic O UMP-CMP kinase|UMP/CMP kinase|cytidylate kinase|deoxycytidylate kinase|uridine monophosphate kinase|uridine monophosphate/cytidine monophosphate kinase 20121230 -9606 51728 POLR3K My010 C11|C11-RNP3|RPC10|RPC11|RPC12.5|hRPC11 HGNC:14121|MIM:606007|HPRD:16187 16 16p13.3 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa protein-coding POLR3K polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa O DNA-directed RNA polymerase III subunit K|DNA-directed RNA polymerase III subunit RPC10|DNA-directed RNA polymerases III 12.5 kDa polypeptide|RNA polymerase III 12.5 kDa subunit|RNA polymerase III subunit (hRPC11)|RNA polymerase III subunit C10|RNA polymerase III subunit C11|RNA polymerase III subunit CII 20121230 -9606 51729 WBP11 - NPWBP|SIPP1|WBP-11 HGNC:16461|Ensembl:ENSG00000084463|HPRD:18293|Vega:OTTHUMG00000168737 12 12p12.3 WW domain binding protein 11 protein-coding WBP11 WW domain binding protein 11 O Npw38-binding protein NpwBP|SH3 domain-binding protein SNP70|WW domain-binding protein 11|splicing factor that interacts with PQBP-1 and PP1|splicing factor, PQBP1 and PP1 interacting 20121230 -9606 51733 UPB1 - BUP1 HGNC:16297|MIM:606673|Ensembl:ENSG00000100024|HPRD:09451|Vega:OTTHUMG00000150749 22 22q11.2 ureidopropionase, beta protein-coding UPB1 ureidopropionase, beta O BUP-1|beta-alanine synthase|beta-ureidopropionase|n-carbamoyl-beta-alanine amidohydrolase 20121230 -9606 51734 MSRB1 HSPC270 SELR|SELX|SEPX1|SepR HGNC:14133|MIM:606216|Ensembl:ENSG00000198736|HPRD:12095|Vega:OTTHUMG00000129143 16 16p13.3 methionine sulfoxide reductase B1 protein-coding MSRB1 methionine sulfoxide reductase B1 O methionine-R-sulfoxide reductase B1|selenoprotein R|selenoprotein X, 1 20121230 -9606 51735 RAPGEF6 - KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 HGNC:20655|MIM:610499|Ensembl:ENSG00000158987|Ensembl:ENSG00000217128|HPRD:11483|Vega:OTTHUMG00000162683|Vega:OTTHUMG00000162686 5 5q31.1 Rap guanine nucleotide exchange factor (GEF) 6 protein-coding RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 O PDZ domain containing guanine nucleotide exchange factor (GEF) 2|PDZ domain-containing guanine nucleotide exchange factor 2|PDZ domain-containing guanine nucleotide exchange factor I|rap guanine nucleotide exchange factor 6 20121230 -9606 51738 GHRL UNQ524/PRO1066 MTLRP HGNC:18129|MIM:605353|Ensembl:ENSG00000157017|HPRD:05638|Vega:OTTHUMG00000155360 3 3p26-p25 ghrelin/obestatin prepropeptide protein-coding GHRL ghrelin/obestatin prepropeptide O appetite-regulating hormone|ghrelin, growth hormone secretagogue receptor ligand|ghrelin/obestatin preprohormone|growth hormone secretagogue|growth hormone-releasing peptide|motilin-related peptide 20121230 -9606 51741 WWOX - D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SDR41C1|WOX1 HGNC:12799|MIM:605131|Ensembl:ENSG00000186153|HPRD:05501|Vega:OTTHUMG00000176851 16 16q23.3-q24.1 WW domain containing oxidoreductase protein-coding WWOX WW domain containing oxidoreductase O WW domain-containing oxidoreductase|WW domain-containing protein WWOX|fragile site FRA16D oxidoreductase|short chain dehydrogenase/reductase family 41C, member 1 20121230 -9606 51742 ARID4B RP11-382D8.2 BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 HGNC:15550|MIM:609696|Ensembl:ENSG00000054267|HPRD:10661|Vega:OTTHUMG00000039621 1 1q42.1-q43 AT rich interactive domain 4B (RBP1-like) protein-coding ARID4B AT rich interactive domain 4B (RBP1-like) O 180 kDa Sin3-associated polypeptide|ARID domain-containing protein 4B|AT-rich interactive domain-containing protein 4B|Rb-binding protein homolog|SIN3A-associated protein 180|breast cancer-associated antigen 1|breast cancer-associated antigen BRCAA1|breast carcinoma-associated antigen|histone deacetylase complex subunit SAP180|retinoblastoma-binding protein 1-like 1|sin3-associated polypeptide p180 20121230 -9606 51744 CD244 - 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 HGNC:18171|MIM:605554|Ensembl:ENSG00000122223|HPRD:16121|Vega:OTTHUMG00000028606 1 1q23.3 CD244 molecule, natural killer cell receptor 2B4 protein-coding CD244 CD244 molecule, natural killer cell receptor 2B4 O NK cell activation inducing ligand NAIL|NK cell activation-inducing ligand|NK cell type I receptor protein 2B4|h2B4|natural killer cell receptor 2B4 20121230 -9606 51747 LUC7L3 - CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A HGNC:24309|MIM:609434|Ensembl:ENSG00000108848|HPRD:16759|Vega:OTTHUMG00000162257 17 17q21.33 LUC7-like 3 (S. cerevisiae) protein-coding LUC7L3 LUC7-like 3 (S. cerevisiae) O CRE-associated protein 1|cAMP regulatory element-associated protein 1|cisplatin resistance associated overexpressed protein|cisplatin resistance-associated overexpressed protein|cisplatin resistance-associated-overexpressed protein|luc7-like protein 3|okadaic acid-inducible phosphoprotein OA48-18 20121230 -9606 51750 RTEL1 RP4-583P15.2 C20orf41|NHL|RTEL|bK3184A7.3 HGNC:15888|MIM:608833|Ensembl:ENSG00000026036|Ensembl:ENSG00000258366|HPRD:15281|Vega:OTTHUMG00000032992|Vega:OTTHUMG00000170363 20 20q13.3 regulator of telomere elongation helicase 1 protein-coding RTEL1 regulator of telomere elongation helicase 1 O regulator of telomere length 20121230 -9606 51751 HIGD1B - CLST11240|CLST11240-15 HGNC:24318|Ensembl:ENSG00000131097|HPRD:16724|Vega:OTTHUMG00000179864 17 17q21.31 HIG1 hypoxia inducible domain family, member 1B protein-coding HIGD1B HIG1 hypoxia inducible domain family, member 1B O HIG1 domain family member 1B 20121230 -9606 51752 ERAP1 UNQ584/PRO1154 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP HGNC:18173|MIM:606832|Ensembl:ENSG00000164307|HPRD:06015|Vega:OTTHUMG00000128721 5 5q15 endoplasmic reticulum aminopeptidase 1 protein-coding ERAP1 endoplasmic reticulum aminopeptidase 1 O adipocyte-derived leucine aminopeptidase|aminopeptidase PILS|aminopeptidase regulator of TNFR1 shedding|endoplasmic reticulum aminopeptidase associated with antigen processing|puromycin-insensitive leucyl-specific aminopeptidase|type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 20121230 -9606 51754 TMEM8B RP11-112J3.10-001 C9orf127|NAG-5|NGX6|RP11-112J3.10 HGNC:21427|Ensembl:ENSG00000137103|HPRD:16674|Vega:OTTHUMG00000019885 9 9p13.3 transmembrane protein 8B protein-coding TMEM8B transmembrane protein 8B O Protein NGX6|nasopharyngeal carcinoma expressed 6|nasopharyngeal carcinoma related protein|nasopharyngeal carcinoma-associated gene 6 protein|protein NAG-5 20121230 -9606 51755 CDK12 - CRK7|CRKR|CRKRS|hCDK12 HGNC:24224|Ensembl:ENSG00000167258|HPRD:10849|Vega:OTTHUMG00000133214 17 17q12 cyclin-dependent kinase 12 protein-coding CDK12 cyclin-dependent kinase 12 O CDC2-related protein kinase 7|Cdc2-related kinase, arginine/serine-rich|cell division cycle 2-related protein kinase 7|cell division protein kinase 12 20121230 -9606 51759 C9orf78 - HCA59|HSPC220|bA409K20.3 HGNC:24932|Ensembl:ENSG00000136819|HPRD:10803|Vega:OTTHUMG00000020796 9 9q34.11 chromosome 9 open reading frame 78 protein-coding C9orf78 chromosome 9 open reading frame 78 O hepatocellular carcinoma-associated antigen 59|uncharacterized protein C9orf78 20121230 -9606 51760 SYT17 - - HGNC:24119|Ensembl:ENSG00000103528|HPRD:17425|Vega:OTTHUMG00000131461 16 16p12.3 synaptotagmin XVII protein-coding SYT17 synaptotagmin XVII O B/K protein|protein B/K|synaptotagmin-17|sytXVII 20121230 -9606 51761 ATP8A2 RP11-141F12.1 ATP|ATPIB|IB|ML-1 HGNC:13533|MIM:605870|Ensembl:ENSG00000132932|HPRD:05795|Vega:OTTHUMG00000016611 13 13q12 ATPase, aminophospholipid transporter, class I, type 8A, member 2 protein-coding ATP8A2 ATPase, aminophospholipid transporter, class I, type 8A, member 2 O ATPase class I type 8A member 2|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2|probable phospholipid-transporting ATPase IB 20121230 -9606 51762 RAB8B - - HGNC:30273|MIM:613532|Ensembl:ENSG00000166128|HPRD:11476|Vega:OTTHUMG00000132862 15 15q22.2 RAB8B, member RAS oncogene family protein-coding RAB8B RAB8B, member RAS oncogene family O RAB-8b protein|ras-related protein Rab-8B 20121230 -9606 51763 INPP5K - PPS|SKIP HGNC:33882|MIM:607875|Ensembl:ENSG00000132376|HPRD:08489|Vega:OTTHUMG00000150648 17 17p13.3 inositol polyphosphate-5-phosphatase K protein-coding INPP5K inositol polyphosphate-5-phosphatase K O inositol polyphosphate 5-phosphatase K|skeletal muscle and kidney-enriched inositol phosphatase 20121230 -9606 51764 GNG13 - G(gamma)13|h2-35 HGNC:14131|MIM:607298|Ensembl:ENSG00000127588|HPRD:12116|Vega:OTTHUMG00000047839 16 16p13.3 guanine nucleotide binding protein (G protein), gamma 13 protein-coding GNG13 guanine nucleotide binding protein (G protein), gamma 13 O G gamma subunit, clone:h2-35|guanine nucleotide binding protein 13, gamma|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 20121230 -9606 51765 MST4 RP6-213H19.1 MASK MIM:300547|Ensembl:ENSG00000134602|HPRD:06663|Vega:OTTHUMG00000022420 X Xq26.2 serine/threonine protein kinase MST4 protein-coding - - - Mst3 and SOK1-related kinase|STE20-like kinase MST4|mammalian Ste20-like protein kinase 4|mammalian sterile 20-like 4|serine/threonine-protein kinase MASK|serine/threonine-protein kinase MST4 20121230 -9606 51768 TM7SF3 - - HGNC:23049|MIM:605181|Ensembl:ENSG00000064115|HPRD:05536|Vega:OTTHUMG00000169243 12 12q11-q12 transmembrane 7 superfamily member 3 protein-coding TM7SF3 transmembrane 7 superfamily member 3 O seven span transmembrane protein|seven transmembrane protein TM7SF3 20121230 -9606 51773 RSF1 - HBXAP|RSF-1|XAP8|p325 HGNC:18118|MIM:608522|Ensembl:ENSG00000048649|HPRD:10537|Vega:OTTHUMG00000150433 11 11q14.1 remodeling and spacing factor 1 protein-coding RSF1 remodeling and spacing factor 1 O HBV pX associated protein-8|HBV pX-associated protein 8|hepatitis B virus x associated protein|hepatitis B virus x-associated protein|p325 subunit of RSF chromatin-remodeling complex 20121230 -9606 51776 ZAK HCCS4 AZK|MLK7|MLT|MLTK|MRK|mlklak|pk MIM:609479|Ensembl:ENSG00000091436|HPRD:11791|Vega:OTTHUMG00000132297 2 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK protein-coding - - - HCCS-4|MLK-like mitogen-activated protein triple kinase|human cervical cancer suppressor gene 4 protein|mitogen-activated protein kinase kinase kinase MLT|mixed lineage kinase 7|mixed lineage kinase with a leucine zipper and a sterile alpha motif|mixed lineage kinase-related kinase MRK-beta 20121230 -9606 51778 MYOZ2 - C4orf5|CMH16|CS-1 HGNC:1330|MIM:605602|Ensembl:ENSG00000172399|HPRD:05724|Vega:OTTHUMG00000132968 4 4q26-q27 myozenin 2 protein-coding MYOZ2 myozenin 2 O FATZ-related protein 2|calcineurin-binding protein calsarcin-1|muscle-specific protein|myozenin-2 20121230 -9606 51780 KDM3B - 5qNCA|C5orf7|JMJD1B|NET22 HGNC:1337|MIM:609373|Ensembl:ENSG00000120733|HPRD:11055|Vega:OTTHUMG00000163469 5 5q31 lysine (K)-specific demethylase 3B protein-coding KDM3B lysine (K)-specific demethylase 3B O jmjC domain-containing histone demethylation protein 2B|jumonji domain containing 1B|jumonji domain-containing protein 1B|lysine-specific demethylase 3B|nuclear protein 5qNCA 20121230 -9606 51802 ASIC5 - ACCN5|HINAC|INAC HGNC:17537|Ensembl:ENSG00000256394|HPRD:16470|Vega:OTTHUMG00000161941 4 4q32.1 acid-sensing (proton-gated) ion channel family member 5 protein-coding ASIC5 acid-sensing (proton-gated) ion channel family member 5 O acid-sensing ion channel 5|amiloride-sensitive cation channel 5, intestinal|amiloride-sensitive sodium channel|human intestine Na(+) channel 20121230 -9606 51804 SIX4 - AREC3 HGNC:10890|MIM:606342|Ensembl:ENSG00000100625|HPRD:06960|Vega:OTTHUMG00000028996 14 14q23 SIX homeobox 4 protein-coding SIX4 SIX homeobox 4 O homeobox protein SIX4|sine oculis homeobox homolog 4 20121230 -9606 51805 COQ3 RP11-98I9.1 DHHBMT|DHHBMTASE|UG0215E05|bA9819.1 HGNC:18175|MIM:605196|Ensembl:ENSG00000132423|HPRD:07283|Vega:OTTHUMG00000015264 6 6q16.2 coenzyme Q3 homolog, methyltransferase (S. cerevisiae) protein-coding COQ3 coenzyme Q3 homolog, methyltransferase (S. cerevisiae) O 2-polyprenyl-6-hydroxyphenyl methylase|3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase|3-demethylubiquinone-10 3-methyltransferase|DHHB methyltransferase|DHHB-MT|DHHB-MTase|dihydroxyhexaprenylbenzoate methyltransferase|hexaprenyldihydroxybenzoate methyltransferase, mitochondrial|methyltransferase COQ3|polyprenyldihydroxybenzoate methyltransferase 20121230 -9606 51806 CALML5 - CLSP HGNC:18180|MIM:605183|Ensembl:ENSG00000178372|HPRD:05538|Vega:OTTHUMG00000017598 10 10p15.1 calmodulin-like 5 protein-coding CALML5 calmodulin-like 5 O calmodulin-like protein 5|calmodulin-like skin protein 20121230 -9606 51807 TUBA8 - TUBAL2 HGNC:12410|MIM:605742|Ensembl:ENSG00000183785|HPRD:05763|Vega:OTTHUMG00000150097 22 22q11.1 tubulin, alpha 8 protein-coding TUBA8 tubulin, alpha 8 O tubulin alpha chain-like 2|tubulin alpha-8 chain 20121230 -9606 51808 PHAX - RNUXA HGNC:10241|MIM:604924|Ensembl:ENSG00000164902|HPRD:15122|Vega:OTTHUMG00000163273 5 5q23.2 phosphorylated adaptor for RNA export protein-coding PHAX phosphorylated adaptor for RNA export O RNA U small nuclear RNA export adapter protein|RNA U, small nuclear RNA export adapter (phosphorylation regulated)|RNA U, small nuclear RNA export adaptor (phosphorylation regulated)|phosphorylated adapter RNA export protein 20121230 -9606 51809 GALNT7 - GALNAC-T7|GalNAcT7 HGNC:4129|MIM:605005|Ensembl:ENSG00000109586|HPRD:10386|Vega:OTTHUMG00000160817 4 4q31.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) protein-coding GALNT7 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) O N-acetylgalactosaminyltransferase 7|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7|polypeptide GalNAc transferase 7|polypeptide N-acetylgalactosaminyltransferase 7|pp-GaNTase 7|protein-UDP acetylgalactosaminyltransferase 7 20121230 -9606 51816 CECR1 - ADA2|ADGF|IDGFL HGNC:1839|MIM:607575|Ensembl:ENSG00000093072|HPRD:10462|Vega:OTTHUMG00000030726 22 22q11.2 cat eye syndrome chromosome region, candidate 1 protein-coding CECR1 cat eye syndrome chromosome region, candidate 1 O adenosine deaminase 2|adenosine deaminase CECR1|cat eye syndrome critical region protein 1 20121230 -9606 53335 BCL11A - BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|EVI9|HBFQTL5|ZNF856 HGNC:13221|MIM:606557|Ensembl:ENSG00000119866|HPRD:05949|Vega:OTTHUMG00000129420 2 2p16.1 B-cell CLL/lymphoma 11A (zinc finger protein) protein-coding BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) O B-cell CLL/lymphoma 11A (zinc finger protein) isoform 2|B-cell lymphoma/leukemia 11A|BCL-11A|BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) isoform 1|C2H2-type zinc finger protein|COUP-TF-interacting protein 1|EVI-9|ecotropic viral integration site 9 homolog|ecotropic viral integration site 9 protein homolog|zinc finger protein 856 20121230 -9606 53336 CPXCR1 RP5-878O8.1 CT77 HGNC:2332|Ensembl:ENSG00000147183|HPRD:06474|Vega:OTTHUMG00000021950 X Xq21.3 CPX chromosome region, candidate 1 protein-coding CPXCR1 CPX chromosome region, candidate 1 O CPX chromosomal region candidate gene 1 protein|cancer/testis antigen 77 20121230 -9606 53338 CAPZA1P - - HGNC:1489 X Xq21.3 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo CAPZA1P capping protein (actin filament) muscle Z-line, alpha 1 pseudogene O - 20121230 -9606 53339 BTBD1 - C15orf1|NS5ATP8 HGNC:1120|MIM:608530|Ensembl:ENSG00000064726|HPRD:12251|Vega:OTTHUMG00000147364 15 15q24 BTB (POZ) domain containing 1 protein-coding BTBD1 BTB (POZ) domain containing 1 O BTB domain containing 1|BTB/POZ domain-containing protein 1|HCV NS5A-transactivated protein 8|hepatitis C virus NS5A-transactivated protein 8 20121230 -9606 53340 SPA17 - CT22|SP17|SP17-1 HGNC:11210|MIM:608621|Ensembl:ENSG00000064199|HPRD:12272|Vega:OTTHUMG00000165927 11 11q24.2 sperm autoantigenic protein 17 protein-coding SPA17 sperm autoantigenic protein 17 O cancer/testis antigen 22|sperm protein 17|sperm surface protein Sp17 20121230 -9606 53341 MHAC - - HGNC:7065|MIM:605013 16 16p13.3-p12.1 microhydranencephaly unknown MHAC microhydranencephaly O - 20120622 -9606 53342 IL17D UNQ3096/PRO21175 IL-17D|IL-22|IL-27|IL27 HGNC:5984|MIM:607587|Ensembl:ENSG00000172458|HPRD:16251|Vega:OTTHUMG00000016521 13 13q11 interleukin 17D protein-coding IL17D interleukin 17D O interleukin 27|interleukin-17D|interleukin-27 20121230 -9606 53343 NUDT9 PSEC0099 NUDT10 HGNC:8056|MIM:606022|Ensembl:ENSG00000170502|HPRD:09353|Vega:OTTHUMG00000130591 4 4q22.1 nudix (nucleoside diphosphate linked moiety X)-type motif 9 protein-coding NUDT9 nudix (nucleoside diphosphate linked moiety X)-type motif 9 O ADP-ribose diphosphatase|ADP-ribose phosphohydrolase|ADP-ribose pyrophosphatase, mitochondrial|ADP-ribose pyrosphosphatase NUDT9|ADPR-PPase|adenosine diphosphoribose pyrophosphatase|nucleoside diphosphate linked moiety X-type motif 9 20121230 -9606 53344 CHIC1 RP11-108A15.1 BRX HGNC:1934|Ensembl:ENSG00000204116|Vega:OTTHUMG00000021835 X Xq13.2 cysteine-rich hydrophobic domain 1 protein-coding CHIC1 cysteine-rich hydrophobic domain 1 O brain X-linked protein|cystein-rich hydrophobic domain 1|cysteine-rich hydrophobic domain 1 protein 20121230 -9606 53345 TM6SF2 - - HGNC:11861|MIM:606563|Ensembl:ENSG00000213996|HPRD:12109|Vega:OTTHUMG00000182222 19 19p13.3-p12 transmembrane 6 superfamily member 2 protein-coding TM6SF2 transmembrane 6 superfamily member 2 O - 20121230 -9606 53346 TM6SF1 - - HGNC:11860|MIM:606562|Ensembl:ENSG00000136404|HPRD:08411|Vega:OTTHUMG00000147365 15 15q24-q26 transmembrane 6 superfamily member 1 protein-coding TM6SF1 transmembrane 6 superfamily member 1 O - 20121230 -9606 53347 UBASH3A - CLIP4|STS-2|TULA|TULA-1 HGNC:12462|MIM:605736|Ensembl:ENSG00000160185|HPRD:06904|Vega:OTTHUMG00000086805 21 21q22.3 ubiquitin associated and SH3 domain containing A protein-coding UBASH3A ubiquitin associated and SH3 domain containing A O T-cell ubiquitin ligand 1|T-cell ubiquitin ligand protein|cbl-interacting protein 4|suppressor of T-cell receptor signaling 2|ubiquitin-associated and SH3 domain-containing protein A 20121230 -9606 53349 ZFYVE1 PP10436 DFCP1|TAFF1|ZNFN2A1 HGNC:13180|MIM:605471|Ensembl:ENSG00000165861|HPRD:12017|Vega:OTTHUMG00000171365 14 14q24.2 zinc finger, FYVE domain containing 1 protein-coding ZFYVE1 zinc finger, FYVE domain containing 1 O SR3|double FYVE-containing protein 1|phosphoinositide-binding protein SR3|tandem FYVE fingers-1 protein|zinc finger FYVE domain-containing protein 1|zinc finger protein, subfamily 2A (FYVE domain containing), 1|zinc finger protein, subfamily 2A, member 1 20121230 -9606 53353 LRP1B - LRP-DIT|LRPDIT HGNC:6693|MIM:608766|Ensembl:ENSG00000168702|HPRD:16383|Vega:OTTHUMG00000131799 2 2q21.2 low density lipoprotein receptor-related protein 1B protein-coding LRP1B low density lipoprotein receptor-related protein 1B O LRP-1B|LRP-deleted in tumors|low density lipoprotein receptor related protein-deleted in tumor|low density lipoprotein-related protein 1B (deleted in tumors)|low-density lipoprotein receptor-related protein 1B|low-density lipoprotein receptor-related protein-deleted in tumor 20121230 -9606 53354 PANK1 - PANK HGNC:8598|MIM:606160|Ensembl:ENSG00000152782|HPRD:07549|Vega:OTTHUMG00000018718 10 10q23.31 pantothenate kinase 1 protein-coding PANK1 pantothenate kinase 1 O pantothenic acid kinase 1 20121230 -9606 53358 SHC3 RP11-82L18.3 N-Shc|NSHC|RAI|SHCC HGNC:18181|MIM:605263|Ensembl:ENSG00000148082|HPRD:12005|Vega:OTTHUMG00000020179 9 9q22.1 SHC (Src homology 2 domain containing) transforming protein 3 protein-coding SHC3 SHC (Src homology 2 domain containing) transforming protein 3 O SH2 domain protein C3|SHC-transforming protein 3|SHC-transforming protein C|neuronal Shc|protein Rai|src homology 2 domain-containing transforming protein C3|src homology 2 domain-containing-transforming protein C3 20121230 -9606 53366 SM2 - - MIM:604201 6 6q22-q23 Hepatic fibrosis susceptibility due to Schistosoma mansoni infection unknown - - - - 20120622 -9606 53368 MDC1B - - MIM:604801 1 1q42 Muscular dystrophy, congenital, 1B unknown - - - - 20120622 -9606 53369 HLN2 - HDL3 MIM:604802 4 4p15.3 Huntington-like neurodegenerative disorder 2 unknown - - - - 20121209 -9606 53371 NUP54 - - HGNC:17359|MIM:607607|Ensembl:ENSG00000138750|HPRD:06352|Vega:OTTHUMG00000130098 4 4q21.1 nucleoporin 54kDa protein-coding NUP54 nucleoporin 54kDa O 54 kDa nucleoporin|nucleoporin p54 20121230 -9606 53373 TPCN1 - TPC1 HGNC:18182|MIM:609666|Ensembl:ENSG00000186815|HPRD:18217|Vega:OTTHUMG00000169625 12 12q24.13 two pore segment channel 1 protein-coding TPCN1 two pore segment channel 1 O two pore calcium channel protein 1|two-pore channel 1|two-pore segment channel 1|voltage-dependent calcium channel protein TPC1 20121230 -9606 53383 CCDC90AP1 - C17orf23 HGNC:1217 17 17p13.3 coiled-coil domain containing 90A pseudogene 1 pseudo CCDC90AP1 coiled-coil domain containing 90A pseudogene 1 O uncharacterized protein LOC53383 20121230 -9606 53400 SMG6-IT1 - C17orf6 HGNC:1220 17 17p13.3 SMG6 intronic transcript 1 (non-protein coding) unknown SMG6-IT1 SMG6 intronic transcript 1 (non-protein coding) O - 20120816 -9606 53405 CLIC5 RP11-546O15.1 MST130|MSTP130 HGNC:13517|MIM:607293|Ensembl:ENSG00000112782|HPRD:06292|Vega:OTTHUMG00000014775 6 6p12.3 chloride intracellular channel 5 protein-coding CLIC5 chloride intracellular channel 5 O chloride intracellular channel protein 5 20121230 -9606 53407 STX18 GIG9 Ufe1 HGNC:15942|MIM:606046|Ensembl:ENSG00000168818|HPRD:06923|Vega:OTTHUMG00000090331 4 4p16.3-p16.2 syntaxin 18 protein-coding STX18 syntaxin 18 O cell growth-inhibiting gene 9 protein|syntaxin-18 20121230 -9606 53409 ATP5LP3 - ATP5KP3|ATPE5KP3 HGNC:13216 4 4p15.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 3 pseudo ATP5LP3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 3 O - 20121230 -9606 53410 ATP5LP2 - ATP5KP2 HGNC:13215 6 6q22.31 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 2 pseudo ATP5LP2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 2 O - 20121230 -9606 53411 ATP5LP1 - ATP5KP1|ATPE5KP1 HGNC:13214 11 11q13.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 1 pseudo ATP5LP1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 1 O - 20121230 -9606 53615 MBD3 - - HGNC:6918|MIM:603573|Ensembl:ENSG00000071655|HPRD:04653|Vega:OTTHUMG00000180081 19 19p13.3 methyl-CpG binding domain protein 3 protein-coding MBD3 methyl-CpG binding domain protein 3 O methyl-CpG-binding domain protein 3 20121230 -9606 53616 ADAM22 - ADAM 22|MDC2 HGNC:201|MIM:603709|Ensembl:ENSG00000008277|HPRD:04751|Vega:OTTHUMG00000137417 7 7q21 ADAM metallopeptidase domain 22 protein-coding ADAM22 ADAM metallopeptidase domain 22 O a disintegrin and metalloproteinase domain 22|disintegrin and metalloproteinase domain-containing protein 22|metalloproteinase-disintegrin ADAM22-3|metalloproteinase-like, disintegrin-like, and cysteine-rich protein 2 20121230 -9606 53630 BCMO1 - BCDO|BCDO1|BCMO|BCO|BCO1 HGNC:13815|MIM:605748|Ensembl:ENSG00000135697|HPRD:12042|Vega:OTTHUMG00000137630 16 16q23.2 beta-carotene 15,15'-monooxygenase 1 protein-coding BCMO1 beta-carotene 15,15'-monooxygenase 1 O beta,beta-carotene 15,15'-monooxygenase|beta-carotene 15, 15'-dioxygenase 1|beta-carotene dioxygenase 1 20121230 -9606 53632 PRKAG3 - AMPKG3 HGNC:9387|MIM:604976|Ensembl:ENSG00000115592|HPRD:16085|Vega:OTTHUMG00000133078 2 2q35 protein kinase, AMP-activated, gamma 3 non-catalytic subunit protein-coding PRKAG3 protein kinase, AMP-activated, gamma 3 non-catalytic subunit O 5'-AMP-activated protein kinase subunit gamma-3|5'-AMP-activated protein kinase, gamma-3 subunit|AMPK gamma-3 chain|AMPK gamma3|AMPK subunit gamma-3 20121230 -9606 53635 PTOV1 PP642 ACID2|PTOV-1 HGNC:9632|MIM:610195|Ensembl:ENSG00000104960|HPRD:17929 19 19q13.33 prostate tumor overexpressed 1 protein-coding PTOV1 prostate tumor overexpressed 1 O activator interaction domain-containing protein 2|prostate tumor overexpressed gene 1|prostate tumor-overexpressed gene 1 protein 20121230 -9606 53637 S1PR5 - EDG8|Edg-8|S1P5|SPPR-1|SPPR-2 HGNC:14299|MIM:605146|Ensembl:ENSG00000180739|HPRD:05510|Vega:OTTHUMG00000180581 19 19p13.2 sphingosine-1-phosphate receptor 5 protein-coding S1PR5 sphingosine-1-phosphate receptor 5 O S1P receptor 5|S1P receptor Edg-8|endothelial differentiation G-protein-coupled receptor 8|endothelial differentiation, sphingolipid G-protein-coupled receptor, 8|sphingosine 1-phosphate receptor 5|sphingosine 1-phosphate receptor EDG8|sphingosine 1-phosphate receptor Edg-8 20121230 -9606 53820 DSCR6 - RIPPLY3 HGNC:3047|MIM:609892|Ensembl:ENSG00000183145|HPRD:10923|Vega:OTTHUMG00000086639 21 21q22.2 Down syndrome critical region gene 6 protein-coding DSCR6 Down syndrome critical region gene 6 O down syndrome critical region protein 6|protein ripply3 20121230 -9606 53822 FXYD7 - - HGNC:4034|MIM:606684|Ensembl:ENSG00000221946|HPRD:09457|Vega:OTTHUMG00000182348 19 19q13.12 FXYD domain containing ion transport regulator 7 protein-coding FXYD7 FXYD domain containing ion transport regulator 7 O FXYD domain-containing ion transport regulator 7 20121230 -9606 53826 FXYD6 UNQ521/PRO1056 - HGNC:4030|MIM:606683|Ensembl:ENSG00000137726|HPRD:09456|Vega:OTTHUMG00000166991 11 11q23.3 FXYD domain containing ion transport regulator 6 protein-coding FXYD6 FXYD domain containing ion transport regulator 6 O FXYD domain-containing ion transport regulator 6|phosphohippolin 20121230 -9606 53827 FXYD5 HSPC113 DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC HGNC:4029|MIM:606669|Ensembl:ENSG00000089327|HPRD:09448|Vega:OTTHUMG00000048092 19 19q13.12 FXYD domain containing ion transport regulator 5 protein-coding FXYD5 FXYD domain containing ion transport regulator 5 O FXYD domain-containing ion transport regulator 5|dysadherin|keratinocytes associated transmembrane protein 1 20121230 -9606 53828 FXYD4 UNQ526/PRO1069 CHIF HGNC:4028|Ensembl:ENSG00000150201|HPRD:07019|Vega:OTTHUMG00000018027 10 10q11.21 FXYD domain containing ion transport regulator 4 protein-coding FXYD4 FXYD domain containing ion transport regulator 4 O FXYD domain-containing ion transport regulator 4|channel-inducing factor 20121230 -9606 53829 P2RY13 FKSG77 GPCR1|GPR86|GPR94|P2Y13|SP174 HGNC:4537|MIM:606380|Ensembl:ENSG00000181631|HPRD:16210|Vega:OTTHUMG00000155745 3 3q24 purinergic receptor P2Y, G-protein coupled, 13 protein-coding P2RY13 purinergic receptor P2Y, G-protein coupled, 13 O G protein-coupled receptor 86|G-protein coupled receptor 86|G-protein coupled receptor 94|P2Y purinoceptor 13 20121230 -9606 53831 GPR84 - EX33|GPCR4 HGNC:4535|MIM:606383|Ensembl:ENSG00000139572|HPRD:16213|Vega:OTTHUMG00000169839 12 12q13.13 G protein-coupled receptor 84 protein-coding GPR84 G protein-coupled receptor 84 O G-protein coupled receptor 84|inflammation-related G protein-coupled receptor EX33|inflammation-related G-protein coupled receptor EX33 20121230 -9606 53832 IL20RA RP11-204P2.1 IL-20R1|ZCYTOR7 HGNC:6003|MIM:605620|Ensembl:ENSG00000016402|HPRD:05729|Vega:OTTHUMG00000015654 6 6q23.3 interleukin 20 receptor, alpha protein-coding IL20RA interleukin 20 receptor, alpha O CRF2-8|IL-20 receptor subunit alpha|IL-20R-alpha|IL-20RA|class II cytokine receptor ZCYTOR7|cytokine receptor class-II member 8|cytokine receptor family 2 member 8|interleukin-20 receptor I|interleukin-20 receptor subunit alpha 20121230 -9606 53833 IL20RB hCG_2022374 DIRS1|FNDC6|IL-20R2 HGNC:6004|MIM:605621|Ensembl:ENSG00000174564|HPRD:14594|Vega:OTTHUMG00000159779 3 3q22.3 interleukin 20 receptor beta protein-coding IL20RB interleukin 20 receptor beta O IL-20 receptor subunit beta|IL-20R-beta|IL-20RB|fibronectin type III domain containing 6|interleukin-20 receptor II|interleukin-20 receptor subunit beta 20121230 -9606 53834 FGFRL1 UNQ480/PRO943 FGFR5|FHFR HGNC:3693|MIM:605830|Ensembl:ENSG00000127418|HPRD:16163|Vega:OTTHUMG00000118998 4 4p16 fibroblast growth factor receptor-like 1 protein-coding FGFRL1 fibroblast growth factor receptor-like 1 O FGF homologous factor receptor|FGF receptor-like protein 1|FGFR-5|FGFR-like protein|fibroblast growth factor receptor 5 20121230 -9606 53836 GPR87 FKSG78 GPR95|KPG_002 HGNC:4538|MIM:606379|Ensembl:ENSG00000138271|HPRD:16209|Vega:OTTHUMG00000159858 3 3q24 G protein-coupled receptor 87 protein-coding GPR87 G protein-coupled receptor 87 O G protein-coupled receptor 95|G-protein coupled receptor 87|G-protein coupled receptor 95|orphan GPCR 87 20121230 -9606 53838 C11orf24 FP2568 DM4E3 HGNC:1174|MIM:610880|Ensembl:ENSG00000171067|HPRD:10704|Vega:OTTHUMG00000167478 11 11q13 chromosome 11 open reading frame 24 protein-coding C11orf24 chromosome 11 open reading frame 24 O uncharacterized protein C11orf24 20121230 -9606 53840 TRIM34 - IFP1|RNF21 HGNC:10063|MIM:605684|Ensembl:ENSG00000258659|HPRD:16141|Vega:OTTHUMG00000066892 11 11p15 tripartite motif containing 34 protein-coding TRIM34 tripartite motif containing 34 O interferon-responsive finger protein 1|ring finger protein 21, interferon-responsive|tripartite motif-containing 34|tripartite motif-containing protein 34 20121230 -9606 53841 CDHR5 UNQ2781/PRO7168 MU-PCDH|MUCDHL|MUPCDH HGNC:7521|MIM:606839|Ensembl:ENSG00000099834|HPRD:06021|Vega:OTTHUMG00000132018 11 11p15.5 cadherin-related family member 5 protein-coding CDHR5 cadherin-related family member 5 O mu-protocadherin|mucin and cadherin-like protein 20121230 -9606 53842 CLDN22 - CLDN21 HGNC:2044|Ensembl:ENSG00000177300|Vega:OTTHUMG00000160627 4 4q35.1 claudin 22 protein-coding CLDN22 claudin 22 O claudin-22 20121230 -9606 53844 COPG2IT1 - CIT1|COPG2AS|DKFZP761N09121|NCRNA00170 HGNC:2238|MIM:610581 7 7q32 COPG2 imprinted transcript 1 (non-protein coding) miscRNA COPG2IT1 COPG2 imprinted transcript 1 (non-protein coding) O - 20121230 -9606 53904 MYO3A - DFNB30 HGNC:7601|MIM:606808|Ensembl:ENSG00000095777|HPRD:06008|Vega:OTTHUMG00000017837 10 10p11.1 myosin IIIA protein-coding MYO3A myosin IIIA O myosin-IIIa 20121230 -9606 53905 DUOX1 - LNOX1|NOXEF1|THOX1 HGNC:3062|MIM:606758|Ensembl:ENSG00000137857|HPRD:08421|Vega:OTTHUMG00000171987 15 15q15.3 dual oxidase 1 protein-coding DUOX1 dual oxidase 1 O NADPH thyroid oxidase 1|flavoprotein NADPH oxidase|large NOX 1|long NOX 1|nicotinamide adenine dinucleotide phosphate oxidase|thyroid oxidase 1 20121230 -9606 53916 RAB4B PP1596 - HGNC:9782|MIM:612945|Ensembl:ENSG00000167578|HPRD:11473 19 19q13.2 RAB4B, member RAS oncogene family protein-coding RAB4B RAB4B, member RAS oncogene family O ras-related GTP-binding protein 4b|ras-related protein Rab-4B|small GTP binding protein RAB4B 20121230 -9606 53917 RAB24 - - HGNC:9765|MIM:612415|Ensembl:ENSG00000169228|HPRD:06697|Vega:OTTHUMG00000130849 5 5q35.3 RAB24, member RAS oncogene family protein-coding RAB24 RAB24, member RAS oncogene family O ras-related protein Rab-24 20121230 -9606 53918 PELO CGI-17 PRO1770 HGNC:8829|MIM:605757|Ensembl:ENSG00000152684|HPRD:09309|Vega:OTTHUMG00000096973 5 5q11.2 pelota homolog (Drosophila) protein-coding PELO pelota homolog (Drosophila) O protein pelota homolog 20121230 -9606 53919 SLCO1C1 - OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 HGNC:13819|MIM:613389|Ensembl:ENSG00000139155|HPRD:08342|Vega:OTTHUMG00000168966 12 12p12.2 solute carrier organic anion transporter family, member 1C1 protein-coding SLCO1C1 solute carrier organic anion transporter family, member 1C1 O OAT-RP-5|OATP-14|organic anion transporter F|organic anion transporter polypeptide-related protein 5|organic anion transporting polypeptide 14|organic anion-transporting polypeptide 14|solute carrier family 21 (organic anion transporter), member 14|solute carrier family 21 member 14|solute carrier organic anion transporter family member 1C1|thyroxine transporter 20121230 -9606 53938 PPIL3 - CYPJ HGNC:9262|Ensembl:ENSG00000240344|HPRD:15163|Vega:OTTHUMG00000132782 2 2q33.1 peptidylprolyl isomerase (cyclophilin)-like 3 protein-coding PPIL3 peptidylprolyl isomerase (cyclophilin)-like 3 O PPIase|PPIase-like protein 3|cyclophilin J|cyclophilin-like protein 3|cyclophilin-like protein PPIL3|peptidyl-prolyl cis-trans isomerase-like 3|peptidylprolyl cis-trans isomerase-like protein 3|rotamase PPIL3 20121230 -9606 53940 FTHL17 - CT38 HGNC:3987|MIM:300308|Ensembl:ENSG00000132446|HPRD:02254|Vega:OTTHUMG00000021332 X Xp21 ferritin, heavy polypeptide-like 17 protein-coding FTHL17 ferritin, heavy polypeptide-like 17 O cancer/testis antigen 38|ferritin heavy polypeptide-like 17 20121230 -9606 53942 CNTN5 - HNB-2s|NB-2 HGNC:2175|MIM:607219|Ensembl:ENSG00000149972|HPRD:06241|Vega:OTTHUMG00000167579 11 11q22.1 contactin 5 protein-coding CNTN5 contactin 5 O contactin-5|neural adhesion molecule|neural recognition molecule NB-2 20121230 -9606 53944 CSNK1G1 - CK1gamma1 HGNC:2454|MIM:606274|Ensembl:ENSG00000169118|Vega:OTTHUMG00000133019 15 15q22.1-q22.31 casein kinase 1, gamma 1 protein-coding CSNK1G1 casein kinase 1, gamma 1 O CKI-gamma 1|casein kinase I isoform gamma-1 20121230 -9606 53947 A4GALT - A14GALT|A4GALT1|Gb3S|P(k)|P1|PK HGNC:18149|MIM:607922|HPRD:06390 22 22q13.2 alpha 1,4-galactosyltransferase protein-coding A4GALT alpha 1,4-galactosyltransferase O CD77 synthase|GB3 synthase|P blood group (P one antigen)|P(k) antigen synthase|P1/Pk synthase|UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase|alpha-1,4-N-acetylglucosaminyltransferase|alpha4Gal-T1|globotriaosylceramide synthase|lactosylceramide 4-alpha-galactosyltransferase 20121230 -9606 53981 CPSF2 - CPSF100 HGNC:2325|MIM:606028|Ensembl:ENSG00000165934|HPRD:05824|Vega:OTTHUMG00000171181 14 14q31.1 cleavage and polyadenylation specific factor 2, 100kDa protein-coding CPSF2 cleavage and polyadenylation specific factor 2, 100kDa O CPSF 100 kDa subunit|CPSF 100kDa subunit|cleavage and polyadenylation specificity factor 100 kDa subunit|cleavage and polyadenylation specificity factor subunit 2 20121230 -9606 54012 ZNF299P - ZNF299|ZNF299P1 HGNC:13088 21 21q21.1 zinc finger protein 299, pseudogene pseudo ZNF299P zinc finger protein 299, pseudogene O - 20121230 -9606 54014 BRWD1 - C21orf107|N143|WDR9 HGNC:12760|Ensembl:ENSG00000185658|HPRD:11683|Vega:OTTHUMG00000066030 21 21q22.2 bromodomain and WD repeat domain containing 1 protein-coding BRWD1 bromodomain and WD repeat domain containing 1 O WD repeat protein WDR9-form2|WD repeat-containing protein 9|bromodomain and WD repeat-containing protein 1|transcriptional unit N143 20121230 -9606 54015 VDAC2P1 - VDAC2P HGNC:12673 21 21q11.2 voltage-dependent anion channel 2 pseudogene 1 pseudo VDAC2P1 voltage-dependent anion channel 2 pseudogene 1 O - 20121230 -9606 54016 TUBAP - - HGNC:12411 21 21q21.1 tubulin, alpha pseudogene pseudo TUBAP tubulin, alpha pseudogene O - 20121230 -9606 54019 SLC6A6P1 - SLC6A6P HGNC:11053 21 21q21.1 solute carrier family 6, member 6 pseudogene 1 pseudo SLC6A6P1 solute carrier family 6, member 6 pseudogene 1 O - 20121230 -9606 54020 SLC37A1 - G3PP HGNC:11024|MIM:608094|Ensembl:ENSG00000160190|HPRD:10479|Vega:OTTHUMG00000086803 21 21q22.3 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 protein-coding SLC37A1 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 O G-3-P permease|G-3-P transporter|glycerol-3-phosphate permease|glycerol-3-phosphate transporter|solute carrier family 37 member 1 20121230 -9606 54021 SRSF9P1 - SFRS9P1 HGNC:10792 21 21q22.12 serine/arginine-rich splicing factor 9 pseudogene 1 pseudo SRSF9P1 serine/arginine-rich splicing factor 9 pseudogene 1 O - 20121230 -9606 54022 RPS5P3 - RPS5L|RPS5_3_1726 HGNC:10427 21 21q22.11 ribosomal protein S5 pseudogene 3 pseudo RPS5P3 ribosomal protein S5 pseudogene 3 O - 20121230 -9606 54023 RPS3AP1 - RPS3AP HGNC:10422 21 21q21.1 ribosomal protein S3A pseudogene 1 pseudo RPS3AP1 ribosomal protein S3A pseudogene 1 O - 20121230 -9606 54024 RPS26P1 - RPS26P HGNC:10415 21 21q22.12 ribosomal protein S26 pseudogene 1 pseudo RPS26P1 ribosomal protein S26 pseudogene 1 O - 20121230 -9606 54025 RPS20P1 - RPS20P|RPS20_16_1728 HGNC:10408 21 21q22.12 ribosomal protein S20 pseudogene 1 pseudo RPS20P1 ribosomal protein S20 pseudogene 1 O - 20121230 -9606 54026 RPL34P3 - - HGNC:10343 21 21q22.12 ribosomal protein L34 pseudogene 3 pseudo RPL34P3 ribosomal protein L34 pseudogene 3 O - 20121230 -9606 54027 RPL31P1 - RPL31P|RPL31_35_1734 HGNC:10335 21 21q22.3 ribosomal protein L31 pseudogene 1 pseudo RPL31P1 ribosomal protein L31 pseudogene 1 O - 20121230 -9606 54028 RPL23P2 - RPL23_4_1724 HGNC:10324 21 21q22.11 ribosomal protein L23 pseudogene 2 pseudo RPL23P2 ribosomal protein L23 pseudogene 2 O - 20121230 -9606 54029 RPL23AP4 - RPL23A_42_1735 HGNC:10321 21 21q22.3 ribosomal protein L23a pseudogene 4 pseudo RPL23AP4 ribosomal protein L23a pseudogene 4 O - 20121230 -9606 54030 RPL10P1 - RPL10P|RPL10_7_1723 HGNC:10300 21 21q21.3 ribosomal protein L10 pseudogene 1 pseudo RPL10P1 ribosomal protein L10 pseudogene 1 O - 20121230 -9606 54031 RIMKLBP1 - FAM80B2|FAM80C|RIMKLB2|RIMKLP HGNC:34034 21 21q22.12 ribosomal modification protein rimK-like family member B pseudogene 1 pseudo RIMKLBP1 ribosomal modification protein rimK-like family member B pseudogene 1 O - 20121230 -9606 54032 RBPMSLP - - HGNC:9923 21 21q11 RNA binding protein with multiple splicing-like pseudogene pseudo RBPMSLP RNA binding protein with multiple splicing-like pseudogene O - 20121230 -9606 54033 RBM11 - - HGNC:9897|Ensembl:ENSG00000185272|HPRD:10185|Vega:OTTHUMG00000074263 21 21q11 RNA binding motif protein 11 protein-coding RBM11 RNA binding motif protein 11 O RNA-binding motif protein 11|putative RNA-binding protein 11|splicing regulator RBM11 20121230 -9606 54034 RAD23BLP - - HGNC:9814 21 21q11 RAD23 homolog B-like (S. cerevisiae) pseudogene pseudo RAD23BLP RAD23 homolog B-like (S. cerevisiae) pseudogene O - 20121230 -9606 54035 PSMD4P1 - PSMD15|PSMD4P HGNC:9562 21 21q22.13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 pseudogene 1 pseudo PSMD4P1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 pseudogene 1 O - 20121230 -9606 54036 PPP1R2P2 - - HGNC:9290 21 21q22.13 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 2 pseudo PPP1R2P2 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 2 O - 20121230 -9606 54038 POLR2CP - - HGNC:9190 21 21q11.2 polymerase (RNA) II (DNA directed) polypeptide C, pseudogene pseudo POLR2CP polymerase (RNA) II (DNA directed) polypeptide C, pseudogene O - 20121230 -9606 54039 PCBP3 - ALPHA-CP3 HGNC:8651|MIM:608502|Ensembl:ENSG00000183570|HPRD:10534|Vega:OTTHUMG00000090399 21 21q22.3 poly(rC) binding protein 3 protein-coding PCBP3 poly(rC) binding protein 3 O poly(rC)-binding protein 3 20121230 -9606 54040 PCBP2P1 - - HGNC:8649 21 21q22.3 poly(rC) binding protein 2 pseudogene 1 pseudo PCBP2P1 poly(rC) binding protein 2 pseudogene 1 O - 20121230 -9606 54041 VN1R8P - ORLP2 HGNC:8497 21 21q11 vomeronasal 1 receptor 8 pseudogene pseudo VN1R8P vomeronasal 1 receptor 8 pseudogene O - 20121230 -9606 54043 MYL6P1 - MYL6P HGNC:7588 21 21q22.3 myosin, light chain 6 pseudogene 1 pseudo MYL6P1 myosin, light chain 6 pseudogene 1 O - 20121230 -9606 54044 KRT18P2 - - HGNC:6435|Vega:OTTHUMG00000078062 21 21q21.1 keratin 18 pseudogene 2 pseudo KRT18P2 keratin 18 pseudogene 2 O - 20121230 -9606 54045 IMMTP1 - IMMTP HGNC:6048 21 21q22.3 inner membrane protein, mitochondrial (mitofilin) pseudogene 1 pseudo IMMTP1 inner membrane protein, mitochondrial (mitofilin) pseudogene 1 O - 20121230 -9606 54047 HSPD1P7 - HSPD1-22P|HSPDP7 HGNC:5268 21 21q21.3 heat shock 60kDa protein 1 (chaperonin) pseudogene 7 pseudo HSPD1P7 heat shock 60kDa protein 1 (chaperonin) pseudogene 7 O - 20121230 -9606 54048 HMGN1P2 - HMG14P|HMGN1L2 HGNC:4985 21 21q22.11 high mobility group nucleosome binding domain 1 pseudogene 2 pseudo HMGN1P2 high mobility group nucleosome binding domain 1 pseudogene 2 O - 20121230 -9606 54049 H2AFZP1 - GT334|H2AFZP HGNC:4742 21 21q22.3 H2A histone family, member Z pseudogene 1 pseudo H2AFZP1 H2A histone family, member Z pseudogene 1 O - 20121230 -9606 54050 GAPDHP14 - GAPDP14 HGNC:4160 21 21q22.11 glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 pseudo GAPDHP14 glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 O - 20121230 -9606 54051 FDPSP6 - FDPSP HGNC:3637 21 21q21.1 farnesyl diphosphate synthase pseudogene 6 pseudo FDPSP6 farnesyl diphosphate synthase pseudogene 6 O - 20121230 -9606 54052 EIF4A1P1 - EIF4A1P HGNC:3283 21 21q21.2 eukaryotic translation initiation factor 4A1 pseudogene 1 pseudo EIF4A1P1 eukaryotic translation initiation factor 4A1 pseudogene 1 O - 20121230 -9606 54053 EIF3FP1 - EIF3FP|EIF3S5P HGNC:3276 21 21p11.2 eukaryotic translation initiation factor 3, subunit F pseudogene 1 pseudo EIF3FP1 eukaryotic translation initiation factor 3, subunit F pseudogene 1 O - 20121230 -9606 54054 EEF1A1P1 - EEF1A1P HGNC:3191 21 21q21.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo EEF1A1P1 eukaryotic translation elongation factor 1 alpha 1 pseudogene O - 20121230 -9606 54055 CYP4F29P - C21orf15|CYP4F3LP HGNC:2647 21 21q11 cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene pseudo CYP4F29P cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene O - 20121230 -9606 54058 C21orf58 - - HGNC:1300|Ensembl:ENSG00000160298|HPRD:10755|Vega:OTTHUMG00000090634 21 21q22.3 chromosome 21 open reading frame 58 protein-coding C21orf58 chromosome 21 open reading frame 58 O uncharacterized protein C21orf58 20121230 -9606 54059 YBEY - C21orf57 HGNC:1299|Ensembl:ENSG00000182362|HPRD:10754|Vega:OTTHUMG00000090632 21 21q22.3 ybeY metallopeptidase (putative) protein-coding YBEY ybeY metallopeptidase (putative) O putative metalloprotease C21orf57|rRNA maturation factor homolog 20121230 -9606 54064 LINC00160 - C21orf52|NCRNA00160 HGNC:1294 21 21q22.12 long intergenic non-protein coding RNA 160 miscRNA LINC00160 long intergenic non-protein coding RNA 160 O - 20121230 -9606 54065 SMIM11 - C21orf51|FAM165B HGNC:1293|Ensembl:ENSG00000205670|HPRD:10751|Vega:OTTHUMG00000086193 21 21q22.12 small integral membrane protein 11 protein-coding SMIM11 small integral membrane protein 11 O family with sequence similarity 165, member B|protein FAM165B 20121230 -9606 54067 C21orf49 - - HGNC:1290|HPRD:10750 21 21q22.11 chromosome 21 open reading frame 49 miscRNA C21orf49 chromosome 21 open reading frame 49 O - 20121230 -9606 54069 MIS18A - B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha HGNC:1286|Ensembl:ENSG00000159055|HPRD:10749|Vega:OTTHUMG00000085308 21 21q22.11 MIS18 kinetochore protein homolog A (S. pombe) protein-coding MIS18A MIS18 kinetochore protein homolog A (S. pombe) O FAPP1-associated protein 1|protein Mis18-alpha 20121230 -9606 54072 LINC00158 - C21orf42|NCRNA00158 HGNC:1283|HPRD:10748 21 21q21.3 long intergenic non-protein coding RNA 158 miscRNA LINC00158 long intergenic non-protein coding RNA 158 O - 20121230 -9606 54074 C21orf40 - - - 21 21q21.1 uncharacterized LOC54074 unknown - - - - 20120508 -9606 54075 CHODL-AS1 - C21orf39|NCRNA00157 HGNC:1279 21 21q21.1 CHODL antisense RNA 1 miscRNA CHODL-AS1 CHODL antisense RNA 1 O - 20121230 -9606 54082 TSPEAR-AS1 - C21orf31 HGNC:1271 21 21q22.3 TSPEAR antisense RNA 1 unknown TSPEAR-AS1 TSPEAR antisense RNA 1 O - 20121021 -9606 54083 LRRC3DN - C21orf30 HGNC:1270 21 21q22.3 LRRC3 downstream neighbor (non-protein coding) unknown LRRC3DN LRRC3 downstream neighbor (non-protein coding) O - 20121230 -9606 54084 TSPEAR - C21orf29|DFNB98 HGNC:1268|MIM:612920|Ensembl:ENSG00000175894|HPRD:09845|Vega:OTTHUMG00000041215 21 21q22.3 thrombospondin-type laminin G domain and EAR repeats protein-coding TSPEAR thrombospondin-type laminin G domain and EAR repeats O TSP-EAR|protein TSPEAR|thrombospondin-type laminin G domain and EAR repeat-containing protein|thrombospondin-type laminin G domain and EAR repeats-containing protein 20121230 -9606 54088 LINC00113 - C21orf23|NCRNA00113 HGNC:1264 21 21q21.3 long intergenic non-protein coding RNA 113 miscRNA LINC00113 long intergenic non-protein coding RNA 113 O - 20121230 -9606 54089 LINC00112 - C21orf22|NCRNA00112 HGNC:1263 21 21q22.3 long intergenic non-protein coding RNA 112 miscRNA LINC00112 long intergenic non-protein coding RNA 112 O - 20121230 -9606 54090 LINC00111 - C21orf21|NCRNA00111 HGNC:1262 21 21q22.3 long intergenic non-protein coding RNA 111 miscRNA LINC00111 long intergenic non-protein coding RNA 111 O - 20121230 -9606 54093 SETD4 - C21orf18|C21orf27 HGNC:1258|Ensembl:ENSG00000185917|HPRD:10743|Vega:OTTHUMG00000086483 21 21q22.13 SET domain containing 4 protein-coding SETD4 SET domain containing 4 O SET domain-containing protein 4 20121230 -9606 54094 C21orf15 - - HGNC:1257 21 21q11 chromosome 21 open reading frame 15 miscRNA C21orf15 chromosome 21 open reading frame 15 O - 20121230 -9606 54097 FAM3B PRED44 2-21|C21orf11|C21orf76|ORF9|PANDER HGNC:1253|MIM:608617|Ensembl:ENSG00000183844|HPRD:10552|Vega:OTTHUMG00000086752 21 21q22.3 family with sequence similarity 3, member B protein-coding FAM3B family with sequence similarity 3, member B O D21M16SJHU19e|cytokine-like protein 2-21|pancreatic derived factor|pancreatic-derived factor|protein FAM3B 20121230 -9606 54098 C1QBPP - - HGNC:1244 21 21q21.1 complement component 1, q subcomponent binding protein, pseudogene pseudo C1QBPP complement component 1, q subcomponent binding protein, pseudogene O - 20121230 -9606 54099 FBXW11P1 - BTRC2P|FBXW1BP|FBXW1BP1 HGNC:1145 21 21q22.11 F-box and WD repeat domain containing 11 pseudogene 1 pseudo FBXW11P1 F-box and WD repeat domain containing 11 pseudogene 1 O - 20121230 -9606 54100 ATP5J2LP - - HGNC:849 21 21q22.13 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2-like pseudogene pseudo ATP5J2LP ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2-like pseudogene O - 20121230 -9606 54101 RIPK4 - ANKK2|ANKRD3|DIK|NKRD3|PKK|RIP4 HGNC:496|MIM:605706|Ensembl:ENSG00000183421|HPRD:10419|Vega:OTTHUMG00000086770 21 21q22.3 receptor-interacting serine-threonine kinase 4 protein-coding RIPK4 receptor-interacting serine-threonine kinase 4 O PKC-delta-interacting protein kinase|ankyrin repeat domain-containing protein 3|protein kinase C-associated kinase|receptor-interacting serine/threonine-protein kinase 4|serine/threonine-protein kinase ANKRD3 20121230 -9606 54102 CLIC6 - CLIC1L HGNC:2065|Ensembl:ENSG00000159212|Vega:OTTHUMG00000086237 21 21q22.12 chloride intracellular channel 6 protein-coding CLIC6 chloride intracellular channel 6 O chloride channel form A|chloride intracellular channel protein 6|parchorin 20121230 -9606 54103 PION tcag7.1314 GSAP HGNC:28042|MIM:613552|Ensembl:ENSG00000186088|HPRD:18671|Vega:OTTHUMG00000150504 7 7q11.23 pigeon homolog (Drosophila) protein-coding PION pigeon homolog (Drosophila) O gamma-secretase-activating protein|protein pigeon homolog 20121230 -9606 54106 TLR9 UNQ5798/PRO19605 CD289 HGNC:15633|MIM:605474|Ensembl:ENSG00000239732|HPRD:05685|Vega:OTTHUMG00000158106 3 3p21.3 toll-like receptor 9 protein-coding TLR9 toll-like receptor 9 O - 20121230 -9606 54107 POLE3 - CHARAC17|CHRAC17|YBL1|p17 HGNC:13546|MIM:607267|Ensembl:ENSG00000148229|HPRD:06274|Vega:OTTHUMG00000020523 9 9q33 polymerase (DNA directed), epsilon 3, accessory subunit protein-coding POLE3 polymerase (DNA directed), epsilon 3, accessory subunit O CHRAC-17|DNA polymerase II subunit 3|DNA polymerase epsilon p17 subunit|DNA polymerase epsilon subunit 3|DNA polymerase epsilon subunit p17|arsenic transactivated protein|arsenic-transactivated protein|asTP|chromatin accessibility complex 17 kDa protein|histone fold protein CHRAC17|huCHRAC17|polymerase (DNA directed), epsilon 3 (p17 subunit) 20121230 -9606 54108 CHRAC1 - CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 HGNC:13544|MIM:607268|Ensembl:ENSG00000104472|HPRD:06275|Vega:OTTHUMG00000164207 8 8q24.3 chromatin accessibility complex 1 protein-coding CHRAC1 chromatin accessibility complex 1 O DNA polymerase epsilon subunit p15|chromatin accessibility complex 15 kDa protein|chromatin accessibility complex protein 1|histone-fold protein CHRAC15 20121230 -9606 54109 CORD8 - - HGNC:2251|MIM:605549 1 1q12-q24 cone rod dystrophy 8 unknown CORD8 cone rod dystrophy 8 O - 20120622 -9606 54110 RP29 - - HGNC:10282|MIM:612165 4 4q32-q34 retinitis pigmentosa 29 (autosomal recessive) unknown RP29 retinitis pigmentosa 29 (autosomal recessive) O - 20120622 -9606 54111 HNB1 - - HGNC:5020 16 16p13-p12 hereditary neuroblastoma 1 unknown HNB1 hereditary neuroblastoma 1 O - 20110215 -9606 54112 GPR88 - STRG HGNC:4539|MIM:607468|Ensembl:ENSG00000181656|HPRD:16248|Vega:OTTHUMG00000010981 1 1p21.3 G protein-coupled receptor 88 protein-coding GPR88 G protein-coupled receptor 88 O G protein coupled receptor 88|G-protein coupled receptor 88|probable G-protein coupled receptor 88|striatum-specific G-protein coupled receptor 20121230 -9606 54113 VUR - - MIM:193000 1 1p13 Vesicoureteral reflux unknown - - - - 20120622 -9606 54114 ODPF - - MIM:300244 - - Osseous dysplasia, digital, with facial pigmentary defects and multiple frenula unknown - - - - 20120622 -9606 54115 PTOS2 - PTOSX MIM:300245 X Xq24-q27.1 Ptosis, hereditary congenital 2 unknown - - - - 20120622 -9606 54119 EIM - - MIM:605021 - - Infantile myoclonic epilepsy unknown - - - - 20120622 -9606 54143 LINC00308 PRED16 C21orf74|NCRNA00308 HGNC:16023 21 21q21.1 long intergenic non-protein coding RNA 308 miscRNA LINC00308 long intergenic non-protein coding RNA 308 O - 20121230 -9606 54145 H2BFS - - HGNC:4762|HPRD:11017 21 21q22.3 H2B histone family, member S (pseudogene) pseudo H2BFS H2B histone family, member S (pseudogene) O - 20121230 -9606 54147 BACH1-IT3 - C21orf8|NCRNA00097 HGNC:16455 21 21q22.11 BACH1 intronic transcript 3 (non-protein coding) miscRNA BACH1-IT3 BACH1 intronic transcript 3 (non-protein coding) O - 20121021 -9606 54148 MRPL39 MSTP003 C21orf92|L39mt|MRP-L5|MRPL5|PRED22|PRED66|RPML5 HGNC:14027|MIM:611845|Ensembl:ENSG00000154719|HPRD:11371|Vega:OTTHUMG00000078371 21 21q21.3 mitochondrial ribosomal protein L39 protein-coding MRPL39 mitochondrial ribosomal protein L39 O 39S ribosomal protein L39, mitochondrial|39S ribosomal protein L5, mitochondrial|L5mt|MRP-L39 20121230 -9606 54149 C21orf91 - C21orf14|C21orf38|CSSG1|EURL|YG81 HGNC:16459|Ensembl:ENSG00000154642|HPRD:10776|Vega:OTTHUMG00000074509 21 21q21.1 chromosome 21 open reading frame 91 protein-coding C21orf91 chromosome 21 open reading frame 91 O cold sore susceptibility gene 1|early undifferentiated retina and lens|protein EURL homolog 20121230 -9606 54165 DCUN1D1 - DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 HGNC:18184|MIM:605905|Ensembl:ENSG00000043093|HPRD:12067|Vega:OTTHUMG00000158314 3 3q26.3 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) protein-coding DCUN1D1 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) O DCN1-like protein 1|DCUN1 domain-containing protein 1|RP42 homolog|defective in cullin neddylation protein 1-like protein 1|squamous cell carcinoma-related oncogene 20121230 -9606 54187 NANS RP11-404F11.3 SAS HGNC:19237|MIM:605202|Ensembl:ENSG00000095380|HPRD:07285|Vega:OTTHUMG00000020341 9 9p24.1-p23 N-acetylneuraminic acid synthase protein-coding NANS N-acetylneuraminic acid synthase O N-acetylneuraminate synthase|N-acetylneuraminate-9-phosphate synthase|N-acetylneuraminic acid phosphate synthase|sialic acid phosphate synthase|sialic acid synthase 20121230 -9606 54205 CYCS - CYC|HCS|THC4 HGNC:19986|MIM:123970|Ensembl:ENSG00000172115|HPRD:00479|Vega:OTTHUMG00000128495 7 7p15.3 cytochrome c, somatic protein-coding CYCS cytochrome c, somatic O cytochrome c 20121230 -9606 54206 ERRFI1 CTA-215D11.2 GENE-33|MIG-6|MIG6|RALT HGNC:18185|MIM:608069|Ensembl:ENSG00000116285|HPRD:09218|Vega:OTTHUMG00000001221 1 1p36 ERBB receptor feedback inhibitor 1 protein-coding ERRFI1 ERBB receptor feedback inhibitor 1 O mitogen-inducible gene 6 protein|receptor-associated late transducer 20121230 -9606 54207 KCNK10 - K2p10.1|TREK-2|TREK2 HGNC:6273|MIM:605873|Ensembl:ENSG00000100433|HPRD:12061|Vega:OTTHUMG00000170743 14 14q31.3 potassium channel, subfamily K, member 10 protein-coding KCNK10 potassium channel, subfamily K, member 10 O 2P domain potassium channel TREK2|TREK-2 K(+) channel subunit|TWIK-related K+ channel 2|outward rectifying potassium channel protein TREK-2|potassium channel TREK-2|potassium channel subfamily K member 10 20121230 -9606 54209 TREM2 RP1-238O23.2 TREM-2|Trem2a|Trem2b|Trem2c HGNC:17761|MIM:605086|Ensembl:ENSG00000095970|HPRD:05473|Vega:OTTHUMG00000014671 6 6p21.1 triggering receptor expressed on myeloid cells 2 protein-coding TREM2 triggering receptor expressed on myeloid cells 2 O triggering receptor expressed on monocytes 2|triggering receptor expressed on myeloid cells 2a 20121230 -9606 54210 TREM1 - CD354|TREM-1 HGNC:17760|MIM:605085|Ensembl:ENSG00000124731|HPRD:05472|Vega:OTTHUMG00000014674 6 6p21.1 triggering receptor expressed on myeloid cells 1 protein-coding TREM1 triggering receptor expressed on myeloid cells 1 O triggering receptor expressed on monocytes 1|triggering-receptor TREM1 20121230 -9606 54212 SNTG1 - G1SYN|SYN4 HGNC:13740|MIM:608714|Ensembl:ENSG00000147481|HPRD:16373|Vega:OTTHUMG00000164257 8 8q11-q12 syntrophin, gamma 1 protein-coding SNTG1 syntrophin, gamma 1 O gamma-1-syntrophin|gamma1-syntrophin|syntrophin 4|syntrophin-4 20121230 -9606 54221 SNTG2 - G2SYN|SYN5 HGNC:13741|MIM:608715|Ensembl:ENSG00000172554|HPRD:16374|Vega:OTTHUMG00000151370 2 2p25.3 syntrophin, gamma 2 protein-coding SNTG2 syntrophin, gamma 2 O gamma-2-syntrophin|syntrophin-5 20121230 -9606 54328 GPR173 RP1-290F12.1 SREB3 HGNC:18186|MIM:300253|Ensembl:ENSG00000184194|HPRD:02220|Vega:OTTHUMG00000021596 X Xp11 G protein-coupled receptor 173 protein-coding GPR173 G protein-coupled receptor 173 O probable G-protein coupled receptor 173|super conserved receptor expressed in brain 3 20121230 -9606 54329 GPR85 - SREB|SREB2 HGNC:4536|MIM:605188|Ensembl:ENSG00000164604|HPRD:05543|Vega:OTTHUMG00000156933 7 7q31 G protein-coupled receptor 85 protein-coding GPR85 G protein-coupled receptor 85 O probable G-protein coupled receptor 85|seven transmembrane helix receptor|super conserved receptor expressed in brain 2 20121230 -9606 54331 GNG2 - - HGNC:4404|MIM:606981|Ensembl:ENSG00000186469|HPRD:16234|Vega:OTTHUMG00000171083 14 14q21 guanine nucleotide binding protein (G protein), gamma 2 protein-coding GNG2 guanine nucleotide binding protein (G protein), gamma 2 O g gamma-I|guanine nucleotide binding protein gamma 2|guanine nucleotide-binding protein G(I)/G(O) gamma-2 subunit|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 20121230 -9606 54332 GDAP1 - CMT4|CMT4A|CMTRIA HGNC:15968|MIM:606598|Ensembl:ENSG00000104381|HPRD:05963|Vega:OTTHUMG00000164509 8 8q21.11 ganglioside induced differentiation associated protein 1 protein-coding GDAP1 ganglioside induced differentiation associated protein 1 O Charcot-Marie-Tooth neuropathy 4A|ganglioside differentiation associated protein 1|ganglioside-induced differentiation-associated protein 1 20121230 -9606 54344 DPM3 RP11-540D14.7 CDG1O HGNC:3007|MIM:605951|Ensembl:ENSG00000179085|HPRD:16179|Vega:OTTHUMG00000035335 1 1q22 dolichyl-phosphate mannosyltransferase polypeptide 3 protein-coding DPM3 dolichyl-phosphate mannosyltransferase polypeptide 3 O DPM synthase complex subunit 3|MPD synthase subunit 3|dolichol-phosphate mannose synthase subunit 3|dolichol-phosphate mannosyltransferase subunit 3|dolichyl-phosphate beta-D-mannosyltransferase subunit 3|mannose-P-dolichol synthase subunit 3|prostin 1|prostin-1 20121230 -9606 54345 SOX18 - HLTS HGNC:11194|MIM:601618|Ensembl:ENSG00000203883|HPRD:07208|Vega:OTTHUMG00000033017 20 20q13.33 SRY (sex determining region Y)-box 18 protein-coding SOX18 SRY (sex determining region Y)-box 18 O SRY-box 18|transcription factor SOX-18 20121230 -9606 54346 UNC93A - Unc-93A|dJ366N23.1|dJ366N23.2 HGNC:12570|MIM:607995|Ensembl:ENSG00000112494|HPRD:12148|Vega:OTTHUMG00000016021 6 6q27 unc-93 homolog A (C. elegans) protein-coding UNC93A unc-93 homolog A (C. elegans) O dJ366N23.1 (putative C. elegans UNC-93 (protein 1, C46F11.1) LIKE)|dJ366N23.2 (putative C. elegans UNC-93 (protein 1, C46F11.1) C-terminal LIKE)|protein unc-93 homolog A|unc93 homolog A 20121230 -9606 54360 CYTL1 UNQ1942/PRO4425 C17|C4orf4 HGNC:24435|MIM:607930|Ensembl:ENSG00000170891|HPRD:16260|Vega:OTTHUMG00000125479 4 4p16-p15 cytokine-like 1 protein-coding CYTL1 cytokine-like 1 O cytokine-like protein 1|cytokine-like protein C17 20121230 -9606 54361 WNT4 RP1-224A6.7 SERKAL|WNT-4 HGNC:12783|MIM:603490|Ensembl:ENSG00000162552|HPRD:04601|Vega:OTTHUMG00000002894 1 1p36.23-p35.1 wingless-type MMTV integration site family, member 4 protein-coding WNT4 wingless-type MMTV integration site family, member 4 O protein Wnt-4 20121230 -9606 54362 DFNM1 - - HGNC:2842|MIM:605429 1 1q24 deafness (recessive, nonsyndromic) modifier 1 unknown DFNM1 deafness (recessive, nonsyndromic) modifier 1 O - 20120622 -9606 54363 HAO1 - GOX|GOX1|HAOX1 HGNC:4809|MIM:605023|Ensembl:ENSG00000101323|HPRD:05429|Vega:OTTHUMG00000031841 20 20p12 hydroxyacid oxidase (glycolate oxidase) 1 protein-coding HAO1 hydroxyacid oxidase (glycolate oxidase) 1 O (S)-2-hydroxy-acid oxidase|glycolate oxidase|hydroxyacid oxidase 1 20121230 -9606 54386 TERF2IP PP8000 DRIP5|RAP1 HGNC:19246|MIM:605061|Ensembl:ENSG00000166848|HPRD:05452|Vega:OTTHUMG00000177136 16 16q23.1 telomeric repeat binding factor 2, interacting protein protein-coding TERF2IP telomeric repeat binding factor 2, interacting protein O RAP1 homolog|TERF2-interacting telomeric protein 1|TRF2-interacting telomeric RAP1 protein|TRF2-interacting telomeric protein 1|dopamine receptor interacting protein 5|dopamine receptor-interacting protein 5|hRap1|repressor/activator protein 1 homolog|telomeric repeat-binding factor 2-interacting protein 1 20121230 -9606 54407 SLC38A2 - ATA2|PRO1068|SAT2|SNAT2 HGNC:13448|MIM:605180|Ensembl:ENSG00000134294|HPRD:05535|Vega:OTTHUMG00000169471 12 12q solute carrier family 38, member 2 protein-coding SLC38A2 solute carrier family 38, member 2 O amino acid transporter 2|amino acid transporter A2|protein 40-9-1|sodium-coupled neutral amino acid transporter 2|system A amino acid transporter 2|system A transporter 1|system N amino acid transporter 2 20121230 -9606 54413 NLGN3 - HNL3 HGNC:14289|MIM:300336|Ensembl:ENSG00000196338|HPRD:02275|Vega:OTTHUMG00000021790 X Xq13.1 neuroligin 3 protein-coding NLGN3 neuroligin 3 O gliotactin homolog|neuroligin-3 20121230 -9606 54414 SIAE - AIS6|CSE-C|CSEC|LSE|YSG2 HGNC:18187|MIM:610079|Ensembl:ENSG00000110013|HPRD:16764|Vega:OTTHUMG00000165926 11 11q24 sialic acid acetylesterase protein-coding SIAE sialic acid acetylesterase O H-Lse|cytosolic sialic acid 9-O-acetylesterase homolog|sialate O-acetylesterase|sialic acid-specific acetylesterase II 20121230 -9606 54429 TAS2R5 - T2R5 HGNC:14912|MIM:605062|Ensembl:ENSG00000127366|HPRD:05453|Vega:OTTHUMG00000157632 7 7q31.3-q32 taste receptor, type 2, member 5 protein-coding TAS2R5 taste receptor, type 2, member 5 O taste receptor type 2 member 5 20121230 -9606 54431 DNAJC10 UNQ495/PRO1012 ERdj5|JPDI|MTHr|PDIA19 HGNC:24637|MIM:607987|Ensembl:ENSG00000077232|HPRD:09722|Vega:OTTHUMG00000154209 2 2q32.1 DnaJ (Hsp40) homolog, subfamily C, member 10 protein-coding DNAJC10 DnaJ (Hsp40) homolog, subfamily C, member 10 O ER-resident protein ERdj5|J-domain-containing protein disulfide isomerase-like protein|dnaJ homolog subfamily C member 10|macrothioredoxin|protein disulfide isomerase family A, member 19 20121230 -9606 54432 YIPF1 - DJ167A19.1|FinGER1 HGNC:25231|Ensembl:ENSG00000058799|HPRD:13147|Vega:OTTHUMG00000008074 1 1p33-p32.1 Yip1 domain family, member 1 protein-coding YIPF1 Yip1 domain family, member 1 O YIP1 family member 1|protein YIPF1 20121230 -9606 54433 GAR1 - NOLA1 HGNC:14264|MIM:606468|Ensembl:ENSG00000109534|HPRD:07569|Vega:OTTHUMG00000161108 4 4q25 GAR1 ribonucleoprotein homolog (yeast) protein-coding GAR1 GAR1 ribonucleoprotein homolog (yeast) O H/ACA ribonucleoprotein complex subunit 1|nucleolar protein family A member 1|nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)|snoRNP protein GAR1 20121230 -9606 54434 SSH1 - SSH1L HGNC:30579|MIM:606778|Ensembl:ENSG00000084112|HPRD:09486|Vega:OTTHUMG00000169371 12 12q24.11 slingshot homolog 1 (Drosophila) protein-coding SSH1 slingshot homolog 1 (Drosophila) O SSH-like protein 1|hSSH-1L|protein phosphatase Slingshot homolog 1 20121230 -9606 54435 HCG4 - HCG4P10|HCGIV-10|HCGIV.9 HGNC:21241 6 6p21.3 HLA complex group 4 (non-protein coding) miscRNA HCG4 HLA complex group 4 (non-protein coding) O - 20121230 -9606 54436 SH3TC1 - - HGNC:26009|Ensembl:ENSG00000125089|HPRD:11556|Vega:OTTHUMG00000160934 4 4p16.1 SH3 domain and tetratricopeptide repeats 1 protein-coding SH3TC1 SH3 domain and tetratricopeptide repeats 1 O SH3 domain and tetratricopeptide repeat-containing protein 1|SH3 domain and tetratricopeptide repeats-containing protein 1 20121230 -9606 54437 SEMA5B UNQ5867/PRO34001 SEMAG|SemG HGNC:10737|MIM:609298|Ensembl:ENSG00000082684|HPRD:15322|Vega:OTTHUMG00000140392 3 3q21.1 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B protein-coding SEMA5B sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B O semaphorin-5B 20121230 -9606 54438 GFOD1 RP11-501I19.1 ADG-90|C6orf114 HGNC:21096|Ensembl:ENSG00000145990|HPRD:13574|Vega:OTTHUMG00000014276 6 6pter-p22.1 glucose-fructose oxidoreductase domain containing 1 protein-coding GFOD1 glucose-fructose oxidoreductase domain containing 1 O glucose-fructose oxidoreductase domain-containing protein 1 20121230 -9606 54439 RBM27 - ARRS1|Psc1 HGNC:29243|Ensembl:ENSG00000091009|Vega:OTTHUMG00000163436 5 5q32 RNA binding motif protein 27 protein-coding RBM27 RNA binding motif protein 27 O RNA-binding motif protein 27|RNA-binding protein 27|acidic rich RS domain containing 1 20121230 -9606 54440 SASH3 RP4-753P9.4 753P9|CXorf9|HACS2|SH3D6C|SLY HGNC:15975|MIM:300441|Ensembl:ENSG00000122122|HPRD:02342|Vega:OTTHUMG00000022372 X Xq26 SAM and SH3 domain containing 3 protein-coding SASH3 SAM and SH3 domain containing 3 O SAM and SH3 domain-containing protein 3|SH3 protein expressed in lymphocytes homolog 20121230 -9606 54441 STAG3L1 - STAG3L2|STAG3L3 HGNC:33852|HPRD:13150 7 7q11.23 stromal antigen 3-like 1 pseudo STAG3L1 stromal antigen 3-like 1 O - 20121230 -9606 54442 KCTD5 - - HGNC:21423|MIM:611285|Ensembl:ENSG00000167977|HPRD:13768|Vega:OTTHUMG00000128930 16 16p13.3 potassium channel tetramerisation domain containing 5 protein-coding KCTD5 potassium channel tetramerisation domain containing 5 O BTB/POZ domain-containing protein KCTD5 20121230 -9606 54443 ANLN - Scraps|scra HGNC:14082|Ensembl:ENSG00000011426|HPRD:09799|Vega:OTTHUMG00000023143 7 7p15-p14 anillin, actin binding protein protein-coding ANLN anillin, actin binding protein O actin-binding protein anillin 20121230 -9606 54453 RIN2 - MACS|RASSF4 HGNC:18750|MIM:610222|Ensembl:ENSG00000132669|HPRD:15249|Vega:OTTHUMG00000031996 20 20p11.22 Ras and Rab interactor 2 protein-coding RIN2 Ras and Rab interactor 2 O RAB5 interacting protein 2|RAS association (RalGDS/AF-6) domain containing protein JC265|RAS association domain family 4|RAS inhibitor JC265|RAS interaction/interference protein 2|ras and Rab interactor 2 20121230 -9606 54454 ATAD2B - - HGNC:29230|Ensembl:ENSG00000119778|Vega:OTTHUMG00000151902 2 2p24.1-p23.3 ATPase family, AAA domain containing 2B protein-coding ATAD2B ATPase family, AAA domain containing 2B O ATPase family AAA domain-containing protein 2B 20121230 -9606 54455 FBXO42 - Fbx42|JFK HGNC:29249|MIM:609109|Ensembl:ENSG00000037637|Vega:OTTHUMG00000002218 1 1p36.23-p36.11 F-box protein 42 protein-coding FBXO42 F-box protein 42 O F-box only protein 42|just one F-box and Kelch domain-containing protein 20121230 -9606 54456 MOV10L1 RP3-402G11.13-002 CHAMP|DJ402G11.8 HGNC:7201|MIM:605794|Ensembl:ENSG00000073146|HPRD:16158|Vega:OTTHUMG00000044648 22 22q13.33 Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) protein-coding MOV10L1 Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) O MOV10-like protein 1|Mov10-like 1|cardiac helicase activated by MEF2C protein|moloney leukemia virus 10-like protein 1|putative helicase Mov10l1 20121230 -9606 54457 TAF7L GHc-521F8.1 CT40|TAF2Q HGNC:11548|MIM:300314|Ensembl:ENSG00000102387|HPRD:02259|Vega:OTTHUMG00000022021 X Xq22.1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa protein-coding TAF7L TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa O RNA polymerase II TBP-associated factor subunit Q|TATA box-binding protein-associated factor 50 kDa|TBP-associated factor, RNA polymerase II, Q|cancer/testis antigen 40|transcription initiation factor TFIID 50 kDa subunit|transcription initiation factor TFIID subunit 7-like 20121230 -9606 54458 PRR13 BM-041 TXR1 HGNC:24528|MIM:610459|Ensembl:ENSG00000205352|HPRD:13211|Vega:OTTHUMG00000170049 12 12q12 proline rich 13 protein-coding PRR13 proline rich 13 O proline-rich protein 13|taxane-resistance protein 20121230 -9606 54460 MRPS21 MDS016 MRP-S21|RPMS21 HGNC:14046|MIM:611984|Ensembl:ENSG00000187145|HPRD:14784|Vega:OTTHUMG00000012544 1 1q21 mitochondrial ribosomal protein S21 protein-coding MRPS21 mitochondrial ribosomal protein S21 O 28S ribosomal protein S21, mitochondrial|S21mt|mitochondrial 28S ribosomal protein S21 20121230 -9606 54461 FBXW5 PP3971 Fbw5 HGNC:13613|MIM:609072|Ensembl:ENSG00000159069|HPRD:10955|Vega:OTTHUMG00000020967 9 9q34.3 F-box and WD repeat domain containing 5 protein-coding FBXW5 F-box and WD repeat domain containing 5 O F-box and WD-40 domain-containing protein 5|F-box/WD repeat-containing protein 5|WD repeat-containing F-box protein FBW5 20121230 -9606 54462 CCSER2 NPD012 FAM190B|Gcap14|KIAA1128|bA486O22.1 HGNC:29197|Ensembl:ENSG00000107771|HPRD:13832|Vega:OTTHUMG00000018641 10 10q23.1 coiled-coil serine-rich protein 2 protein-coding CCSER2 coiled-coil serine-rich protein 2 O family with sequence similarity 190, member B|protein FAM190B|protein GCAP14 homolog 20121230 -9606 54463 FAM134B - JK-1|JK1 HGNC:25964|MIM:613114|Ensembl:ENSG00000154153|HPRD:07879|Vega:OTTHUMG00000161788 5 5p15.1 family with sequence similarity 134, member B protein-coding FAM134B family with sequence similarity 134, member B O protein FAM134B 20121230 -9606 54464 XRN1 - SEP1 HGNC:30654|MIM:607994|Ensembl:ENSG00000114127|HPRD:10470|Vega:OTTHUMG00000159251 3 3q23 5'-3' exoribonuclease 1 protein-coding XRN1 5'-3' exoribonuclease 1 O strand-exchange protein 1 homolog 20121230 -9606 54465 ETAA1 - ETAA16 HGNC:24648|MIM:613196|Ensembl:ENSG00000143971|HPRD:13282|Vega:OTTHUMG00000129545 2 2p14 Ewing tumor-associated antigen 1 protein-coding ETAA1 Ewing tumor-associated antigen 1 O ETAA16|ewing's tumor-associated antigen 1|ewing's tumor-associated antigen 16 20121230 -9606 54466 SPIN2A RP3-323P24.1 DXF34|RP3-323P24.2|SPIN2|dJ323P24.1 HGNC:20694|MIM:300621|Ensembl:ENSG00000147059|HPRD:06725|Vega:OTTHUMG00000022705 X Xp11.1 spindlin family, member 2A protein-coding SPIN2A spindlin family, member 2A O centromeric spin2 copy|spindlin homolog 2|spindlin-2A|spindlin-like protein 2|spindlin-like protein 2A 20121230 -9606 54467 ANKIB1 - - HGNC:22215|Ensembl:ENSG00000001629|Vega:OTTHUMG00000155859 7 7q21.2 ankyrin repeat and IBR domain containing 1 protein-coding ANKIB1 ankyrin repeat and IBR domain containing 1 O ankyrin repeat and IBR domain-containing protein 1 20121230 -9606 54468 MIOS - - HGNC:21905|Ensembl:ENSG00000164654|HPRD:07898|Vega:OTTHUMG00000152440 7 7p21.3 missing oocyte, meiosis regulator, homolog (Drosophila) protein-coding MIOS missing oocyte, meiosis regulator, homolog (Drosophila) O H_DJ1159O04.1|WD repeat-containing protein mio|WUGSC:H_DJ1159O04.1 20121230 -9606 54469 ZFAND6 HT032 AWP1|ZA20D3|ZFAND5B HGNC:30164|MIM:610183|Ensembl:ENSG00000086666|HPRD:18314|Vega:OTTHUMG00000144169 15 15q25.1 zinc finger, AN1-type domain 6 protein-coding ZFAND6 zinc finger, AN1-type domain 6 O AN1-type zinc finger protein 6|protein associated with PRK1|zinc finger, A20 domain containing 3 20121230 -9606 54470 ARMCX6 RP4-545K15.1 - HGNC:26094|Ensembl:ENSG00000198960|HPRD:06536|Vega:OTTHUMG00000022034 X Xq21.33-q22.3 armadillo repeat containing, X-linked 6 protein-coding ARMCX6 armadillo repeat containing, X-linked 6 O protein ARMCX6 20121230 -9606 54471 SMCR7L RP5-1104E15.5 HSU79252|MID51|MIEF1|dJ1104E15.3 HGNC:25979|Ensembl:ENSG00000100335|HPRD:13371|Vega:OTTHUMG00000151105 22 22q13 Smith-Magenis syndrome chromosome region, candidate 7-like protein-coding SMCR7L Smith-Magenis syndrome chromosome region, candidate 7-like O mitochondrial dynamic protein MID51|mitochondrial dynamic protein of 51 kDa|mitochondrial elongation factor 1|smith-Magenis syndrome chromosomal region candidate gene 7 protein-like 20121230 -9606 54472 TOLLIP - IL-1RAcPIP HGNC:16476|MIM:606277|Ensembl:ENSG00000078902|HPRD:05887|Vega:OTTHUMG00000133333 11 11p15.5 toll interacting protein protein-coding TOLLIP toll interacting protein O adapter protein|toll-interacting protein 20121230 -9606 54474 KRT20 - CD20|CK-20|CK20|K20|KRT21 HGNC:20412|MIM:608218|Ensembl:ENSG00000171431|HPRD:12193|Vega:OTTHUMG00000133366 17 17q21.2 keratin 20 protein-coding KRT20 keratin 20 O cytokeratin 20|cytokeratin-20|keratin, type I cytoskeletal 20|keratin-20|protein IT 20121230 -9606 54475 NLE1 HUSSY-07 Nle HGNC:19889|Ensembl:ENSG00000073536|HPRD:16903|Vega:OTTHUMG00000132928 17 17q12 notchless homolog 1 (Drosophila) protein-coding NLE1 notchless homolog 1 (Drosophila) O Notchless gene homolog|notchless protein homolog 1 20121230 -9606 54476 RNF216 - TRIAD3|U7I1|UBCE7IP1|ZIN HGNC:21698|MIM:609948|Ensembl:ENSG00000011275|HPRD:15550|Vega:OTTHUMG00000155500 7 7p22.1 ring finger protein 216 protein-coding RNF216 ring finger protein 216 O E3 ubiquitin-protein ligase RNF216|triad domain-containing protein 3|ubiquitin-conjugating enzyme 7-interacting protein 1|zinc finger protein inhibiting NF-kappa-B 20121230 -9606 54477 PLEKHA5 - PEPP-2|PEPP2 HGNC:30036|MIM:607770|Ensembl:ENSG00000052126|HPRD:09684|Vega:OTTHUMG00000167921 12 12p12 pleckstrin homology domain containing, family A member 5 protein-coding PLEKHA5 pleckstrin homology domain containing, family A member 5 O PH domain-containing family A member 5|phosphoinositol 3-phosphate-binding protein-2|pleckstrin homology domain-containing family A member 5 20121230 -9606 54478 FAM64A - CATS|RCS1 HGNC:25483|Ensembl:ENSG00000129195|HPRD:07649|Vega:OTTHUMG00000177832 17 17p13.2 family with sequence similarity 64, member A protein-coding FAM64A family with sequence similarity 64, member A O CALM interacting protein expressed in thymus and spleen|protein FAM64A|regulator of chromosome segregation 1 20121230 -9606 54480 CHPF2 UNQ299/PRO339 CSGLCA-T|CSGlcAT|ChSy-3 HGNC:29270|MIM:608037|Ensembl:ENSG00000033100|HPRD:10474|Vega:OTTHUMG00000157380 7 7q36.1 chondroitin polymerizing factor 2 protein-coding CHPF2 chondroitin polymerizing factor 2 O N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase|chPF-2|chondroitin glucuronyltransferase|chondroitin sulfate glucuronyltransferase|chondroitin synthase 3|chondroitin synthase-3 20121230 -9606 54482 TRMT13 RP11-305E17.1 CCDC76 HGNC:25502|Ensembl:ENSG00000122435|HPRD:07659|Vega:OTTHUMG00000010841 1 1p21.2 tRNA methyltransferase 13 homolog (S. cerevisiae) protein-coding TRMT13 tRNA methyltransferase 13 homolog (S. cerevisiae) O coiled-coil domain containing 76|coiled-coil domain-containing protein 76|tRNA [Gm4] methyltransferase|tRNA guanosine-2'-O-methyltransferase TRM13 homolog 20121230 -9606 54487 DGCR8 LP4941 C22orf12|DGCRK6|Gy1|pasha HGNC:2847|MIM:609030|Ensembl:ENSG00000128191|HPRD:09913|Vega:OTTHUMG00000150503 22 22q11.2 DiGeorge syndrome critical region gene 8 protein-coding DGCR8 DiGeorge syndrome critical region gene 8 O DiGeorge syndrome critical region 8|microprocessor complex subunit DGCR8 20121230 -9606 54490 UGT2B28 - - HGNC:13479|MIM:606497|Ensembl:ENSG00000135226|HPRD:05931|Vega:OTTHUMG00000129401 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide B28 protein-coding UGT2B28 UDP glucuronosyltransferase 2 family, polypeptide B28 O UDP glycosyltransferase 2 family, polypeptide B28|UDP-glucuronosyltransferase 2B28|UDPGT 2B28 20121230 -9606 54491 FAM105A - NET20 HGNC:25629|Ensembl:ENSG00000145569|HPRD:07733|Vega:OTTHUMG00000131056 5 5p15.2 family with sequence similarity 105, member A protein-coding FAM105A family with sequence similarity 105, member A O protein FAM105A 20121230 -9606 54492 NEURL1B - NEURL3|hNeur2|neur2 HGNC:35422|Ensembl:ENSG00000214357|Vega:OTTHUMG00000163281 5 5q35.1 neuralized homolog 1B (Drosophila) protein-coding NEURL1B neuralized homolog 1B (Drosophila) O E3 ubiquitin-protein ligase NEURL1B|E3 ubiquitin-protein ligase NEURL3|neuralized 2 alternative protein|neuralized-2|neuralized-like protein 1B|neuralized-like protein 3 20121230 -9606 54494 C11orf71 - - HGNC:25937|Ensembl:ENSG00000180425|HPRD:07874|Vega:OTTHUMG00000168247 11 11q23.2 chromosome 11 open reading frame 71 protein-coding C11orf71 chromosome 11 open reading frame 71 O uncharacterized protein C11orf71 20121230 -9606 54495 TMX3 - PDIA13|TXNDC10 HGNC:24718|Ensembl:ENSG00000166479|HPRD:15591|Vega:OTTHUMG00000172713 18 18q22 thioredoxin-related transmembrane protein 3 protein-coding TMX3 thioredoxin-related transmembrane protein 3 O protein disulfide isomerase family A, member 13|protein disulfide-isomerase TMX3|thioredoxin domain containing 10|thioredoxin domain-containing protein 10 20121230 -9606 54496 PRMT7 - - HGNC:25557|MIM:610087|Ensembl:ENSG00000132600|HPRD:15174|Vega:OTTHUMG00000137556 16 16q22.1 protein arginine methyltransferase 7 protein-coding PRMT7 protein arginine methyltransferase 7 O [Myelin basic protein]-arginine N-methyltransferase PRMT7|histone-arginine N-methyltransferase PRMT7|myelin basic protein-arginine N-methyltransferase|protein arginine N-methyltransferase 7 20121230 -9606 54497 HEATR5B - - HGNC:29273|Ensembl:ENSG00000008869|HPRD:11145|Vega:OTTHUMG00000152158 2 2p22.2 HEAT repeat containing 5B protein-coding HEATR5B HEAT repeat containing 5B O HEAT repeat-containing protein 5B 20121230 -9606 54498 SMOX RP4-779E11.4 C20orf16|PAO|PAO-1|PAOH1|SMO HGNC:15862|Ensembl:ENSG00000088826|HPRD:11587|Vega:OTTHUMG00000031777 20 20p13 spermine oxidase protein-coding SMOX spermine oxidase O flavin containing amine oxidase|flavin-containing spermine oxidase|polyamine oxidase 1|putative cyclin G1 interacting protein 20121230 -9606 54499 TMCO1 PNAS-10 HP10122|PCIA3|PNAS-136|RP11-466F5.7|TMCC4 HGNC:18188|MIM:614123|Ensembl:ENSG00000143183|HPRD:14243|Vega:OTTHUMG00000034672 1 1q22-q25 transmembrane and coiled-coil domains 1 protein-coding TMCO1 transmembrane and coiled-coil domains 1 O putative membrane protein|transmembrane and coiled-coil domain-containing protein 1|transmembrane and coiled-coil domains 4|xenogeneic cross-immune protein PCIA3 20121230 -9606 54501 CLF - - MIM:604595 13 13q cholesterol-lowering factor unknown - - - - 20120622 -9606 54502 RBM47 - NET18 HGNC:30358|Ensembl:ENSG00000163694|Vega:OTTHUMG00000128598 4 4p14 RNA binding motif protein 47 protein-coding RBM47 RNA binding motif protein 47 O RNA-binding motif protein 47|RNA-binding protein 47 20121230 -9606 54503 ZDHHC13 - HIP14L|HIP3RP HGNC:18413|MIM:612815|Ensembl:ENSG00000177054|HPRD:15710|Vega:OTTHUMG00000166099 11 11p15.1 zinc finger, DHHC-type containing 13 protein-coding ZDHHC13 zinc finger, DHHC-type containing 13 O DHHC-13|HIP14-related protein|huntingtin interacting protein HIP3RP|huntingtin-interacting protein 14-related protein|huntingtin-interacting protein HIP3RP|palmitoyltransferase ZDHHC13|probable palmitoyltransferase ZDHHC13|putative MAPK-activating protein PM03|putative NF-kappa-B-activating protein 209|zinc finger DHHC domain-containing protein 13|zinc finger, DHHC domain containing 13 20121230 -9606 54504 CPVL tcag7.235 HVLP HGNC:14399|MIM:609780|Ensembl:ENSG00000106066|HPRD:07479|Vega:OTTHUMG00000023669 7 7p15.1 carboxypeptidase, vitellogenic-like protein-coding CPVL carboxypeptidase, vitellogenic-like O CP-Mac carboxypeptidase|VCP-like protein|carboxypeptidase WUG|probable serine carboxypeptidase CPVL|vitellogenic carboxypeptidase-like protein 20121230 -9606 54505 DHX29 - DDX29 HGNC:15815|MIM:612720|Ensembl:ENSG00000067248|HPRD:10882|Vega:OTTHUMG00000162313 5 5q11.2 DEAH (Asp-Glu-Ala-His) box polypeptide 29 protein-coding DHX29 DEAH (Asp-Glu-Ala-His) box polypeptide 29 O ATP-dependent RNA helicase DHX29|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 29|DEAH box protein 29|nucleic acid helicase DDXx 20121230 -9606 54507 ADAMTSL4 PP1396 ECTOL2|TSRC1 HGNC:19706|MIM:610113|Ensembl:ENSG00000143382|HPRD:08583|HPRD:18237|Vega:OTTHUMG00000034863 1 1q21.3 ADAMTS-like 4 protein-coding ADAMTSL4 ADAMTS-like 4 O ADAMTS-like protein 4|ADAMTSL-4|thrombospondin repeat containing 1|thrombospondin repeat-containing protein 1 20121230 -9606 54508 FLJ11235 - - - 5 5q22.2 uncharacterized FLJ11235 miscRNA - - - - 20121230 -9606 54509 RHOF - ARHF|RIF HGNC:15703|Ensembl:ENSG00000139725|HPRD:15246|Vega:OTTHUMG00000169077 12 12q24.31 ras homolog family member F (in filopodia) protein-coding RHOF ras homolog family member F (in filopodia) O ras homolog gene family, member F (in filopodia)|rho family GTPase Rif|rho in filopodia|rho-related GTP-binding protein RhoF 20121230 -9606 54510 PCDH18 - PCDH68L HGNC:14268|MIM:608287|Ensembl:ENSG00000189184|HPRD:12205|Vega:OTTHUMG00000161348 4 4q31 protocadherin 18 protein-coding PCDH18 protocadherin 18 O protocadherin 68-like protein|protocadherin-18 20121230 -9606 54511 HMGCLL1 RP11-418P12.1 bA418P12.1|er-cHL HGNC:21359|Ensembl:ENSG00000146151|HPRD:13663|Vega:OTTHUMG00000014902 6 6p12.1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 protein-coding HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 O 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like protein 1|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1|endoplasmic reticulum 3-hydroxymethyl-3-methylglutaryl-CoA lyase|probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 20121230 -9606 54512 EXOSC4 - RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A HGNC:18189|MIM:606491|Ensembl:ENSG00000178896|HPRD:16221|Vega:OTTHUMG00000165437 8 8q24.3 exosome component 4 protein-coding EXOSC4 exosome component 4 O exosome complex component RRP41|exosome complex exonuclease RRP41|exosome component Rrp41|ribosomal RNA-processing protein 41 20121230 -9606 54514 DDX4 - VASA HGNC:18700|MIM:605281|Ensembl:ENSG00000152670|HPRD:05593|Vega:OTTHUMG00000097044 5 5p15.2-p13.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 protein-coding DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 O DEAD box protein 4|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 4|probable ATP-dependent RNA helicase DDX4|vasa homolog 20121230 -9606 54516 MTRF1L RP1-101K10.1 HMRF1L|MRF1L|mtRF1a HGNC:21051|MIM:613542|Ensembl:ENSG00000112031|HPRD:17613|Vega:OTTHUMG00000015857 6 6q25-q26 mitochondrial translational release factor 1-like protein-coding MTRF1L mitochondrial translational release factor 1-like O mitochondrial release factor 1 like|peptide chain release factor 1-like, mitochondrial 20121230 -9606 54517 PUS7 - - HGNC:26033|Ensembl:ENSG00000091127|HPRD:07914|Vega:OTTHUMG00000157399 7 7q22.3 pseudouridylate synthase 7 homolog (S. cerevisiae) protein-coding PUS7 pseudouridylate synthase 7 homolog (S. cerevisiae) O pseudouridylate synthase 7 homolog 20121230 -9606 54518 APBB1IP RP11-128B16.1 INAG1|PREL1|RARP1|RIAM HGNC:17379|MIM:609036|Ensembl:ENSG00000077420|HPRD:16420|Vega:OTTHUMG00000017841 10 10p12.1 amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein protein-coding APBB1IP amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein O APBB1-interacting protein 1|PREL-1|RARP-1|Rap1-GTP-interacting adaptor molecule|Rap1-interacting adaptor molecule|amyloid beta A4 precursor protein-binding family B member 1-interacting protein|proline rich EVH1 ligand 1|proline-rich EVH1 ligand 1|proline-rich protein 73|rap1-GTP-interacting adapter molecule|retinoic acid-responsive proline-rich protein 1 20121230 -9606 54520 CCDC93 - - HGNC:25611|Ensembl:ENSG00000125633|HPRD:08557|Vega:OTTHUMG00000058517 2 2q14.1 coiled-coil domain containing 93 protein-coding CCDC93 coiled-coil domain containing 93 O coiled-coil domain-containing protein 93 20121230 -9606 54521 WDR44 RP13-25C19.1 RAB11BP|RPH11 HGNC:30512|Ensembl:ENSG00000131725|HPRD:11682|Vega:OTTHUMG00000022254 X Xq24 WD repeat domain 44 protein-coding WDR44 WD repeat domain 44 O WD repeat-containing protein 44|rabphilin-11 20121230 -9606 54522 ANKRD16 RP11-318E3.7 - HGNC:23471|Ensembl:ENSG00000134461|HPRD:12459|Vega:OTTHUMG00000017610 10 10p15.1 ankyrin repeat domain 16 protein-coding ANKRD16 ankyrin repeat domain 16 O ankyrin repeat domain-containing protein 16 20121230 -9606 54529 ASNSD1 Nbla00058 NBLA00058|NS3TP1 HGNC:24910|Ensembl:ENSG00000138381|HPRD:17645|Vega:OTTHUMG00000132665 2 2p24.3-q21.3 asparagine synthetase domain containing 1 protein-coding ASNSD1 asparagine synthetase domain containing 1 O HCV NS3-transactivated protein 1|asparagine synthetase domain-containing protein 1 20121230 -9606 54531 MIER2 - KIAA1193|Mi-er2 HGNC:29210|Ensembl:ENSG00000105556|HPRD:11130|Vega:OTTHUMG00000180532 19 19p13.3 mesoderm induction early response 1, family member 2 protein-coding MIER2 mesoderm induction early response 1, family member 2 O mesoderm induction early response protein 2 20121230 -9606 54532 USP53 - - HGNC:29255|Ensembl:ENSG00000145390|HPRD:11669|Vega:OTTHUMG00000161331 4 4q26 ubiquitin specific peptidase 53 protein-coding USP53 ubiquitin specific peptidase 53 O inactive ubiquitin carboxyl-terminal hydrolase 53|inactive ubiquitin-specific peptidase 53|ubiquitin specific protease 53|ubiquitin specific proteinase 53 20121230 -9606 54534 MRPL50 - MRP-L50 HGNC:16654|MIM:611854|Ensembl:ENSG00000136897|HPRD:14768|Vega:OTTHUMG00000020384 9 9q31.1 mitochondrial ribosomal protein L50 protein-coding MRPL50 mitochondrial ribosomal protein L50 O 39S ribosomal protein L50, mitochondrial|L50mt|mitochondrial 39S ribosomal protein L50 20121230 -9606 54535 CCHCR1 XXbac-BCX101P6.10-002 C6orf18|HCR|SBP HGNC:13930|MIM:605310|Ensembl:ENSG00000204536|HPRD:05607|Vega:OTTHUMG00000031112 6 6p21.3 coiled-coil alpha-helical rod protein 1 protein-coding CCHCR1 coiled-coil alpha-helical rod protein 1 O HCR (a-helix coiled-coil rod homologue)|StAR-binding protein|alpha-helical coiled-coil rod protein|pg8|putative gene 8 protein 20121230 -9606 54536 EXOC6 RP11-348J12.4 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p HGNC:23196|MIM:609672|Ensembl:ENSG00000138190|HPRD:10216|Vega:OTTHUMG00000018767 10 10q23.33 exocyst complex component 6 protein-coding EXOC6 exocyst complex component 6 O SEC15-like 1|SEC15-like protein 1|SEC15-like protein 3|exocyst complex component Sec15A 20121230 -9606 54537 FAM35A RP11-163M19.1 FAM35A1|bA163M19.1 HGNC:28773|Ensembl:ENSG00000122376|HPRD:09944|Vega:OTTHUMG00000018669 10 10q23.2 family with sequence similarity 35, member A protein-coding FAM35A family with sequence similarity 35, member A O protein FAM35A 20121230 -9606 54538 ROBO4 UNQ421/PRO3674 ECSM4|MRB HGNC:17985|MIM:607528|Ensembl:ENSG00000154133|HPRD:09604|Vega:OTTHUMG00000165936 11 11q24.2 roundabout, axon guidance receptor, homolog 4 (Drosophila) protein-coding ROBO4 roundabout, axon guidance receptor, homolog 4 (Drosophila) O roundabout homolog 4|roundabout homolog 4, magic roundabout 20121230 -9606 54539 NDUFB11 CTD-2522E6.3 CI-ESSS|ESSS|NP17.3|Np15|P17.3 HGNC:20372|MIM:300403|Ensembl:ENSG00000147123|HPRD:02323|Vega:OTTHUMG00000021433 X Xp11.23 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa protein-coding NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa O NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial|NADH-ubiquinone oxidoreductase ESSS subunit|complex I NP17.3 subunit|complex I-ESSS|neuronal protein 17.3 20121230 -9606 54540 FAM193B - IRIZIO HGNC:25524|Ensembl:ENSG00000146067|HPRD:07671|Vega:OTTHUMG00000163396 5 5q35.3 family with sequence similarity 193, member B protein-coding FAM193B family with sequence similarity 193, member B O protein FAM193B 20121230 -9606 54541 DDIT4 RP11-442H21.1 Dig2|REDD-1|REDD1 HGNC:24944|MIM:607729|Ensembl:ENSG00000168209|HPRD:09662|Vega:OTTHUMG00000018435 10 10q22.1 DNA-damage-inducible transcript 4 protein-coding DDIT4 DNA-damage-inducible transcript 4 O DNA damage-inducible transcript 4 protein|HIF-1 responsive protein RTP801|protein regulated in development and DNA damage response 1 20121230 -9606 54542 RC3H2 RP11-163B6.3 MNAB|RNF164 HGNC:21461|Ensembl:ENSG00000056586|HPRD:14726|Vega:OTTHUMG00000020632 9 9q34 ring finger and CCCH-type domains 2 protein-coding RC3H2 ring finger and CCCH-type domains 2 O RING finger and CCCH-type zinc finger domain-containing protein 2|RING finger protein 164|membrane associated DNA binding protein|membrane-associated nucleic acid binding protein|membrane-associated nucleic acid-binding protein|ring finger and CCCH-type zinc finger domains 2 20121230 -9606 54543 TOMM7 AD-014 TOM7 HGNC:21648|MIM:607980|Ensembl:ENSG00000196683|HPRD:16266|Vega:OTTHUMG00000094805 7 7p15.3 translocase of outer mitochondrial membrane 7 homolog (yeast) protein-coding TOMM7 translocase of outer mitochondrial membrane 7 homolog (yeast) O 6.2 kd protein|mitochondrial import receptor subunit TOM7 homolog|translocase of outer membrane 7 kDa subunit homolog 20121230 -9606 54544 CRCT1 - C1orf42|NICE-1 HGNC:29875|Ensembl:ENSG00000169509|HPRD:16635|Vega:OTTHUMG00000012391 1 1q21 cysteine-rich C-terminal 1 protein-coding CRCT1 cysteine-rich C-terminal 1 O cysteine-rich C-terminal protein 1|protein NICE-1 20121230 -9606 54545 MTMR12 - 3-PAP|PIP3AP HGNC:18191|MIM:606501|Ensembl:ENSG00000150712|HPRD:05933|Vega:OTTHUMG00000161978 5 5p13.3 myotubularin related protein 12 protein-coding MTMR12 myotubularin related protein 12 O 3-phosphatase adapter protein|3-phosphatase adapter subunit|myotubularin-related protein 12|phosphatidylinositol 3 phosphate 3-phosphatase adapter subunit|phosphatidylinositol-3 phosphate 3-phosphatase adapter subunit|phosphatidylinositol-3 phosphate 3-phosphatase adaptor subunit|phosphatidylinositol-3-phosphate associated protein 20121230 -9606 54546 RNF186 - RP11-91K11.1 HGNC:25978|Ensembl:ENSG00000178828|HPRD:07885|Vega:OTTHUMG00000002709 1 1p36.13 ring finger protein 186 protein-coding RNF186 ring finger protein 186 O RING finger protein 186 20121230 -9606 54549 SDK2 - - HGNC:19308|MIM:607217|Ensembl:ENSG00000069188|HPRD:06239|Vega:OTTHUMG00000152726 17 17q25.1 sidekick cell adhesion molecule 2 protein-coding SDK2 sidekick cell adhesion molecule 2 O protein sidekick-2|sidekick homolog 2 20121230 -9606 54550 NECAB2 - EFCBP2 HGNC:23746|Ensembl:ENSG00000103154|HPRD:13263|Vega:OTTHUMG00000137636 16 16q23.3 N-terminal EF-hand calcium binding protein 2 protein-coding NECAB2 N-terminal EF-hand calcium binding protein 2 O EF hand calcium binding protein 2|EF-hand calcium binding protein 2|EF-hand calcium-binding protein 2|N-terminal EF-hand calcium-binding protein 2|neuronal calcium binding 2|neuronal calcium-binding protein 2|stip-2|synaptotagmin-interacting protein 2 20121230 -9606 54551 MAGEL2 - NDNL1|nM15 HGNC:6814|MIM:605283|Ensembl:ENSG00000254585|HPRD:12008|Vega:OTTHUMG00000167582 15 15q11-q12 MAGE-like 2 protein-coding MAGEL2 MAGE-like 2 O MAGE-like protein 2|necdin-like protein 1|protein nM15 20121230 -9606 54552 GNL3L RP11-353K22.1 - HGNC:25553|MIM:300873|Ensembl:ENSG00000130119|HPRD:06514|Vega:OTTHUMG00000021629 X Xp11.22 guanine nucleotide binding protein-like 3 (nucleolar)-like protein-coding GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like O guanine nucleotide-binding protein-like 3-like protein|novel GTPase 20121230 -9606 54553 DKFZP434I0714 - - - 4 4q31.23 uncharacterized protein DKFZP434I0714 miscRNA - - - - 20121230 -9606 54554 WDR5B - - HGNC:17826|Ensembl:ENSG00000196981|HPRD:18302|Vega:OTTHUMG00000159489 3 3q21.1 WD repeat domain 5B protein-coding WDR5B WD repeat domain 5B O WD repeat-containing protein 5B 20121230 -9606 54555 DDX49 - R27090_2 HGNC:18684|Ensembl:ENSG00000105671|HPRD:10864 19 19p12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 protein-coding DDX49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 O DEAD box protein 49|probable ATP-dependent RNA helicase DDX49 20121230 -9606 54556 ING3 HSPC301 Eaf4|ING2|MEAF4|p47ING3 HGNC:14587|MIM:607493|Ensembl:ENSG00000071243|HPRD:06321|Vega:OTTHUMG00000141270 7 7q31 inhibitor of growth family, member 3 protein-coding ING3 inhibitor of growth family, member 3 O inhibitor of growth protein 3 20121230 -9606 54557 SGTB - SGT2 HGNC:23567|Ensembl:ENSG00000197860|HPRD:18049|Vega:OTTHUMG00000097801 5 5q12.3 small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta protein-coding SGTB small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta O beta-SGT|small glutamine rich protein with tetratricopeptide repeats 2|small glutamine-rich protein with tetratricopeptide repeats 2|small glutamine-rich tetratricopeptide repeat-containing protein beta 20121230 -9606 54558 SPATA6 RP11-252A4.1 HASH|SRF-1|SRF1 HGNC:18309|MIM:613947|Ensembl:ENSG00000132122|HPRD:15430|Vega:OTTHUMG00000007794 1 1p33 spermatogenesis associated 6 protein-coding SPATA6 spermatogenesis associated 6 O spermatogenesis-associated protein 6|spermatogenesis-related factor-1 20121230 -9606 54566 EPB41L4B - CG1|EHM2 HGNC:19818|MIM:610340|Ensembl:ENSG00000095203|HPRD:09940|Vega:OTTHUMG00000020470 9 9q31-q32 erythrocyte membrane protein band 4.1 like 4B protein-coding EPB41L4B erythrocyte membrane protein band 4.1 like 4B O EHM2|FERM-containing protein CG1|band 4.1-like protein 4B 20121230 -9606 54567 DLL4 UNQ1895/PRO4341 hdelta2 HGNC:2910|MIM:605185|Ensembl:ENSG00000128917|HPRD:05540|Vega:OTTHUMG00000172511 15 15q14 delta-like 4 (Drosophila) protein-coding DLL4 delta-like 4 (Drosophila) O delta 4|delta ligand 4|delta-like 4 homolog|delta-like 4 protein|delta-like protein 4|delta4|drosophila Delta homolog 4|notch ligand DLL4|notch ligand delta-2 20121230 -9606 54568 UGT2B29P - - HGNC:12552 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B29 pseudogene pseudo UGT2B29P UDP glucuronosyltransferase 2 family, polypeptide B29 pseudogene O - 20121230 -9606 54569 UGT2B27P - - HGNC:12551 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B27 pseudogene pseudo UGT2B27P UDP glucuronosyltransferase 2 family, polypeptide B27 pseudogene O - 20121230 -9606 54570 UGT2B26P - - HGNC:12550 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B26 pseudogene pseudo UGT2B26P UDP glucuronosyltransferase 2 family, polypeptide B26 pseudogene O - 20121230 -9606 54571 UGT2B25P - - HGNC:12549 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B25 pseudogene pseudo UGT2B25P UDP glucuronosyltransferase 2 family, polypeptide B25 pseudogene O - 20121230 -9606 54572 UGT2B24P - - HGNC:12548 4 4q13 UDP glucuronosyltransferase 2 family, polypeptide B24 pseudogene pseudo UGT2B24P UDP glucuronosyltransferase 2 family, polypeptide B24 pseudogene O - 20121230 -9606 54573 UGT1A12P - UGT1L HGNC:12533|Ensembl:ENSG00000228949 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A12 pseudogene pseudo UGT1A12P UDP glucuronosyltransferase 1 family, polypeptide A12 pseudogene O - 20121230 -9606 54574 UGT1A11P - UGT1K HGNC:12532|Ensembl:ENSG00000227846 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A11 pseudogene pseudo UGT1A11P UDP glucuronosyltransferase 1 family, polypeptide A11 pseudogene O - 20121230 -9606 54575 UGT1A10 - UDPGT|UGT-1J|UGT1-10|UGT1.10|UGT1J HGNC:12531|MIM:606435|Ensembl:ENSG00000242515|HPRD:07336|Vega:OTTHUMG00000059121 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A10 protein-coding UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 O UDP glycosyltransferase 1 family, polypeptide A10|UDP-glucuronosyltransferase 1-10|UDP-glucuronosyltransferase 1-J|UDP-glucuronosyltransferase 1A10|UDPGT 1-10 20121230 -9606 54576 UGT1A8 - UDPGT|UDPGT 1-8|UGT-1H|UGT1-08|UGT1.8|UGT1A8S|UGT1H HGNC:12540|MIM:606433|Ensembl:ENSG00000242366|HPRD:07072|Vega:OTTHUMG00000059123 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A8 protein-coding UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 O UDP glycosyltransferase 1 family, polypeptide A8|UDP-glucuronosyltransferase 1 family polypeptide A8s|UDP-glucuronosyltransferase 1-8|UDP-glucuronosyltransferase 1-H|UDP-glucuronosyltransferase 1A8 20121230 -9606 54577 UGT1A7 - UDPGT|UDPGT 1-7|UGT-1G|UGT1-07|UGT1.7|UGT1G HGNC:12539|MIM:606432|Ensembl:ENSG00000244122|HPRD:09397|Vega:OTTHUMG00000059004 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A7 protein-coding UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7 O UDP glycosyltransferase 1 family, polypeptide A7|UDP-glucuronosyltransferase 1 family polypeptide A7s|UDP-glucuronosyltransferase 1-7|UDP-glucuronosyltransferase 1-G|UDP-glucuronosyltransferase 1A7 20121230 -9606 54578 UGT1A6 - GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT1|UGT1A6S|UGT1F HGNC:12538|MIM:606431|Ensembl:ENSG00000167165|HPRD:07071|Vega:OTTHUMG00000059122 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A6 protein-coding UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 O UDP glycosyltransferase 1 family, polypeptide A6|UDP-glucuronosyltransferase 1 family polypeptide A6s|UDP-glucuronosyltransferase 1-6|UDP-glucuronosyltransferase 1-F|UDP-glucuronosyltransferase 1A6|UGT-1F|UGT1*6|UGT1-06|UGT1.6|phenol-metabolizing UDP-glucuronosyltransferase 20121230 -9606 54579 UGT1A5 - UDPGT|UDPGT 1-5|UGT1E HGNC:12537|MIM:606430|Ensembl:ENSG00000240224|HPRD:07335|Vega:OTTHUMG00000059120 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A5 protein-coding UGT1A5 UDP glucuronosyltransferase 1 family, polypeptide A5 O UDP glycosyltransferase 1 family, polypeptide A5|UDP-glucuronosyltransferase 1 family polypeptide A5s|UDP-glucuronosyltransferase 1-5|UDP-glucuronosyltransferase 1-E|UDP-glucuronosyltransferase 1A5|UGT-1E|UGT1*5 20121230 -9606 54580 UGT1A2P - UGT1BP HGNC:12534|Ensembl:ENSG00000228445 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A2 pseudogene pseudo UGT1A2P UDP glucuronosyltransferase 1 family, polypeptide A2 pseudogene O - 20121230 -9606 54581 SCAND2 - - HGNC:10567|MIM:610417|HPRD:18021 15 15q25.2 SCAN domain containing 2 pseudogene pseudo SCAND2 SCAN domain containing 2 pseudogene O - 20121230 -9606 54583 EGLN1 PNAS-118 C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 HGNC:1232|MIM:606425|Ensembl:ENSG00000135766|HPRD:06971|Vega:OTTHUMG00000038027 1 1q42.1 egl nine homolog 1 (C. elegans) protein-coding EGLN1 egl nine homolog 1 (C. elegans) O HIF prolyl hydroxylase 2|HIF-prolyl hydroxylase 2|egl nine homolog 1|egl nine-like protein 1|hypoxia-inducible factor prolyl hydroxylase 2|prolyl hydroxylase domain-containing protein 2|zinc finger MYND domain-containing protein 6 20121230 -9606 54584 GNB1L FKSG1 DGCRK3|GY2|WDR14|WDVCF HGNC:4397|MIM:610778|Ensembl:ENSG00000185838|HPRD:13591|Vega:OTTHUMG00000150279 22 22q11.2 guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein-coding GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like O G-protein beta subunit-like protein|WD repeat-containing protein 14|WD40 repeat-containing protein deleted in VCFS|g protein subunit beta-like protein 1|guanine nucleotide binding protein beta-subunit-like polypeptide|guanine nucleotide-binding protein subunit beta-like protein 1 20121230 -9606 54585 LZTFL1 - - HGNC:6741|MIM:606568|Ensembl:ENSG00000163818|HPRD:07586|Vega:OTTHUMG00000133452 3 3p21.3 leucine zipper transcription factor-like 1 protein-coding LZTFL1 leucine zipper transcription factor-like 1 O leucine zipper transcription factor-like protein 1 20121230 -9606 54586 EQTN - AFAF|C9orf11|SPACA8|equatorin HGNC:1359|Ensembl:ENSG00000120160|HPRD:12932|Vega:OTTHUMG00000021033 9 9p21 equatorin, sperm acrosome associated protein-coding EQTN equatorin, sperm acrosome associated O acrosome formation associated factor|acrosome formation-associated factor|sperm acrosome associated 8 20121230 -9606 54587 MXRA8 - - HGNC:7542|Ensembl:ENSG00000162576|HPRD:11330|Vega:OTTHUMG00000002973 1 1p36.33 matrix-remodelling associated 8 protein-coding MXRA8 matrix-remodelling associated 8 O limitrin|matrix-remodeling-associated protein 8 20121230 -9606 54596 L1TD1 - ECAT11|RP5-1155K23.3 HGNC:25595|Ensembl:ENSG00000240563|HPRD:07708|Vega:OTTHUMG00000008914 1 1p31.3 LINE-1 type transposase domain containing 1 protein-coding L1TD1 LINE-1 type transposase domain containing 1 O ES cell-associated protein 11|LINE-1 type transposase domain-containing protein 1 20121230 -9606 54600 UGT1A9 - HLUGP4|LUGP4|UDPGT|UDPGT 1-9|UGT-1I|UGT1-09|UGT1-9|UGT1.9|UGT1AI|UGT1I HGNC:12541|MIM:606434|Ensembl:ENSG00000241119|HPRD:07073|Vega:OTTHUMG00000059124 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A9 protein-coding UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9 O UDP glycosyltransferase 1 family, polypeptide A9|UDP-glucuronosyltransferase 1-9|UDP-glucuronosyltransferase 1-I|UDP-glucuronosyltransferase 1A9 20121230 -9606 54602 NDFIP2 - N4WBP5A HGNC:18537|MIM:610041|Ensembl:ENSG00000102471|HPRD:17629|Vega:OTTHUMG00000017136 13 13q31.1 Nedd4 family interacting protein 2 protein-coding NDFIP2 Nedd4 family interacting protein 2 O MAPK-activating protein PM04 PM05 PM06 PM07|NEDD4 WW domain-binding protein 5A|NEDD4 family-interacting protein 2|NF-kappa-B-activating protein 413|putative MAPK-activating protein PM04/PM05/PM06/PM07|putative NF-kappa-B-activating protein 413 20121230 -9606 54606 DDX56 - DDX21|DDX26|NOH61 HGNC:18193|MIM:608023|Ensembl:ENSG00000136271|HPRD:12154|Vega:OTTHUMG00000129211 7 7p13 DEAD (Asp-Glu-Ala-Asp) box helicase 56 protein-coding DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 O 61-kd nucleolar helicase|ATP-dependent 61 kDa nucleolar RNA helicase|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56|DEAD box protein 21|DEAD box protein 56|DEAD-box RNA helicase|nucleolar helicase of 61 kDa|probable ATP-dependent RNA helicase DDX56|putative nucleolar RNA helicase 20121230 -9606 54617 INO80 - INO80A|INOC1|hINO80 HGNC:26956|MIM:610169|Ensembl:ENSG00000128908|HPRD:10024|Vega:OTTHUMG00000130209 15 15q15.1 INO80 homolog (S. cerevisiae) protein-coding INO80 INO80 homolog (S. cerevisiae) O DNA helicase INO80|INO80 complex subunit A|homolog of yeast INO80|putative DNA helicase INO80 complex homolog 1 20121230 -9606 54619 CCNJ - bA690P14.1 HGNC:23434|Ensembl:ENSG00000107443|HPRD:07710|Vega:OTTHUMG00000018823 10 10q23.33 cyclin J protein-coding CCNJ cyclin J O cyclin-J 20121230 -9606 54620 FBXL19 - Fbl19|JHDM1C HGNC:25300|MIM:609085|Ensembl:ENSG00000099364|HPRD:12366|Vega:OTTHUMG00000132403 16 16p11.2 F-box and leucine-rich repeat protein 19 protein-coding FBXL19 F-box and leucine-rich repeat protein 19 O F-box/LRR-repeat protein 19|jumonji C domain-containing histone demethylase 1C 20121230 -9606 54621 VSIG10 - - HGNC:26078|Ensembl:ENSG00000176834|HPRD:07941|Vega:OTTHUMG00000168835 12 12q24.23 V-set and immunoglobulin domain containing 10 protein-coding VSIG10 V-set and immunoglobulin domain containing 10 O V-set and immunoglobulin domain-containing protein 10 20121230 -9606 54622 ARL15 - ARFRP2 HGNC:25945|Ensembl:ENSG00000185305|HPRD:12471|Vega:OTTHUMG00000162287 5 5p15.2 ADP-ribosylation factor-like 15 protein-coding ARL15 ADP-ribosylation factor-like 15 O ADP-ribosylation factor related protein 2|ADP-ribosylation factor-like protein 15|ADP-ribosylation factor-related protein 2|ARF-related protein 2 20121230 -9606 54623 PAF1 - F23149_1|PD2 HGNC:25459|MIM:610506|Ensembl:ENSG00000006712|HPRD:10140 19 19q13.1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) protein-coding PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) O RNA polymerase II-associated factor 1 homolog|pancreatic differentiation protein 2 20121230 -9606 54625 PARP14 - ARTD8|BAL2|PARP-14|pART8 HGNC:29232|MIM:610028|Ensembl:ENSG00000173193|HPRD:11421|Vega:OTTHUMG00000159552 3 3q21.1 poly (ADP-ribose) polymerase family, member 14 protein-coding PARP14 poly (ADP-ribose) polymerase family, member 14 O ADP-ribosyltransferase diphtheria toxin-like 8|B-aggressive lymphoma 2|b aggressive lymphoma protein 2|collaborator of STAT6|poly [ADP-ribose] polymerase 14 20121230 -9606 54626 HES2 - bHLHb40 HGNC:16005|MIM:609970|Ensembl:ENSG00000069812|HPRD:13649|Vega:OTTHUMG00000000752 1 1p36.31 hairy and enhancer of split 2 (Drosophila) protein-coding HES2 hairy and enhancer of split 2 (Drosophila) O class B basic helix-loop-helix protein 40|transcription factor HES-2 20121230 -9606 54627 KIAA1383 - - HGNC:29265|Ensembl:ENSG00000212916|Vega:OTTHUMG00000037819 1 1q42.2 KIAA1383 protein-coding KIAA1383 KIAA1383 O uncharacterized protein KIAA1383 20121230 -9606 54629 FAM63B - - HGNC:26954|Ensembl:ENSG00000128923|HPRD:13835|Vega:OTTHUMG00000171983 15 15q21.3 family with sequence similarity 63, member B protein-coding FAM63B family with sequence similarity 63, member B O protein FAM63B 20121230 -9606 54657 UGT1A4 - HUG-BR2|UDPGT|UDPGT 1-4|UGT-1D|UGT1-04|UGT1.4|UGT1D HGNC:12536|MIM:606429|Ensembl:ENSG00000244474|HPRD:08402|Vega:OTTHUMG00000059119 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A4 protein-coding UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 O UDP glycosyltransferase 1 family, polypeptide A4|UDP-glucuronosyltransferase 1-4|UDP-glucuronosyltransferase 1-D|UDP-glucuronosyltransferase 1A4|bilirubin UDP-glucuronosyltransferase isozyme 2|bilirubin-specific UDPGT isozyme 2 20121230 -9606 54658 UGT1A1 - BILIQTL1|GNT1|HUG-BR1|UDPGT|UDPGT 1-1|UGT1|UGT1A HGNC:12530|MIM:191740|Ensembl:ENSG00000241635|HPRD:08933|Vega:OTTHUMG00000059117 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A1 protein-coding UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1 O UDP glycosyltransferase 1 family, polypeptide A1|UDP-glucuronosyltransferase 1-1|UDP-glucuronosyltransferase 1-A|UDP-glucuronosyltransferase 1A1|UGT-1A|UGT1*1|UGT1-01|UGT1.1|bilirubin UDP-glucuronosyltransferase 1-1|bilirubin UDP-glucuronosyltransferase isozyme 1|bilirubin-specific UDPGT isozyme 1 20121230 -9606 54659 UGT1A3 - UDPGT|UDPGT 1-3|UGT-1C|UGT1-03|UGT1.3|UGT1C HGNC:12535|MIM:606428|Ensembl:ENSG00000243135|HPRD:07566|Vega:OTTHUMG00000059118 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A3 protein-coding UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 O UDP glycosyltransferase 1 family, polypeptide A3|UDP-glucuronosyltransferase 1-3|UDP-glucuronosyltransferase 1-C|UDP-glucuronosyltransferase 1A3|UGT1*3 20121230 -9606 54660 PCDHB18 - PCDH-psi2 HGNC:14548 5 5q31 protocadherin beta 18 pseudogene pseudo PCDHB18 protocadherin beta 18 pseudogene O - 20121230 -9606 54661 PCDHB17 - ME4|PCDH-psi1 HGNC:14547 5 5q31 protocadherin beta 17 pseudogene pseudo PCDHB17 protocadherin beta 17 pseudogene O - 20121230 -9606 54662 TBC1D13 RP11-545E17.5 - HGNC:25571|Ensembl:ENSG00000107021|HPRD:18163|Vega:OTTHUMG00000020760 9 9q34.11 TBC1 domain family, member 13 protein-coding TBC1D13 TBC1 domain family, member 13 O TBC1 domain family member 13 20121230 -9606 54663 WDR74 - - HGNC:25529|Ensembl:ENSG00000133316|HPRD:08548|Vega:OTTHUMG00000167695 11 11q12.3 WD repeat domain 74 protein-coding WDR74 WD repeat domain 74 O NOP seven-associated protein 1|WD repeat-containing protein 74 20121230 -9606 54664 TMEM106B - - HGNC:22407|MIM:613413|Ensembl:ENSG00000106460|HPRD:07745|Vega:OTTHUMG00000125537 7 7p21.3 transmembrane protein 106B protein-coding TMEM106B transmembrane protein 106B O - 20121230 -9606 54665 RSBN1 - ROSBIN|RP11-324J2.1 HGNC:25642|Ensembl:ENSG00000081019|HPRD:08561|Vega:OTTHUMG00000011938 1 1p13.2 round spermatid basic protein 1 protein-coding RSBN1 round spermatid basic protein 1 O - 20121230 -9606 54674 LRRN3 Nbla10363 FIGLER5|NLRR-3|NLRR3 HGNC:17200|Ensembl:ENSG00000173114|HPRD:14321|Vega:OTTHUMG00000155039 7 7q31.1 leucine rich repeat neuronal 3 protein-coding LRRN3 leucine rich repeat neuronal 3 O fibronectin type III, immunoglobulin and leucine rich repeat domains 5|leucine-rich repeat neuronal protein 3|leucine-rich repeat protein, neuronal 3|neuronal leucine-rich repeat protein 3 20121230 -9606 54675 CRLS1 - C20orf155|CLS|CLS1|GCD10|dJ967N21.6 HGNC:16148|MIM:608188|Ensembl:ENSG00000088766|HPRD:12187|Vega:OTTHUMG00000031823 20 20p13-p12.3 cardiolipin synthase 1 protein-coding CRLS1 cardiolipin synthase 1 O cardiolipin synthase 20121230 -9606 54676 GTPBP2 RP11-22I24.2 - HGNC:4670|MIM:607434|Ensembl:ENSG00000172432|HPRD:08465|Vega:OTTHUMG00000014744 6 6p21 GTP binding protein 2 protein-coding GTPBP2 GTP binding protein 2 O GTP-binding protein 2 20121230 -9606 54677 CROT - COT HGNC:2366|MIM:606090|Ensembl:ENSG00000005469|HPRD:12081|Vega:OTTHUMG00000023653 7 7q21.1 carnitine O-octanoyltransferase protein-coding CROT carnitine O-octanoyltransferase O peroxisomal carnitine O-octanoyltransferase|peroxisomal carnitine acyltransferase 20121230 -9606 54680 ZNHIT6 - BCD1|C1orf181|NY-BR-75 HGNC:26089|Ensembl:ENSG00000117174|HPRD:08630|Vega:OTTHUMG00000010576 1 1p22.3 zinc finger, HIT-type containing 6 protein-coding ZNHIT6 zinc finger, HIT-type containing 6 O box C/D snoRNA essential 1 homolog|box C/D snoRNA protein 1|serologically defined breast cancer antigen NY-BR-75|zinc finger HIT domain-containing protein 6|zinc finger, HIT type 6 20121230 -9606 54681 P4HTM - EGLN4|HIFPH4|P4H-TM|PH-4|PH4|PHD4 HGNC:28858|MIM:614584|Ensembl:ENSG00000178467|HPRD:17842|Vega:OTTHUMG00000074057 3 3p21.31|3p21.3 prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) protein-coding P4HTM prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) O HIF-PH4|HIF-prolyl hydroxylase 4|HPH-4|P4H with transmembrane domain|Prolyl hydroxlase domain-containing 4|hypoxia inducible factor prolyl 4 hydroxylase|hypoxia-inducible factor prolyl 4-hydroxylase|hypoxia-inducible factor prolyl hydroxylase 4|proline 4-hydroxylase|transmembrane prolyl 4-hydroxylase 20121230 -9606 54682 MANSC1 UNQ316/PRO361 9130403P13Rik|LOH12CR3 HGNC:25505|Ensembl:ENSG00000111261|HPRD:10067|Vega:OTTHUMG00000168541 12 12p13.2 MANSC domain containing 1 protein-coding MANSC1 MANSC domain containing 1 O MANSC domain-containing protein 1|loss of heterozygosity 12 chromosomal region 3 protein 20121230 -9606 54700 RRN3 - A-270G1.2|TIFIA HGNC:30346|MIM:605121|Ensembl:ENSG00000085721|HPRD:12004|Vega:OTTHUMG00000129847 16 16p12 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) protein-coding RRN3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) O RNA polymerase I-specific transcription initiation factor RRN3|TIF-IA|transcription initiation factor IA|transcription initiation factor TIF-IA 20121230 -9606 54704 PDP1 - PDH|PDP|PDPC|PPM2C HGNC:9279|MIM:605993|Ensembl:ENSG00000164951|HPRD:16185|Vega:OTTHUMG00000164356 8 8q22.1 pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding PDP1 pyruvate dehyrogenase phosphatase catalytic subunit 1 O PDP 1|PDPC 1|[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial|protein phosphatase 2C, magnesium-dependent, catalytic subunit|pyruvate dehydrogenase (Lipoamide) phosphatase-phosphatase|pyruvate dehydrogenase phosphatase catalytic subunit 1 20121230 -9606 54707 GPN2 RP1-50O24.5 ATPBD1B HGNC:25513|Ensembl:ENSG00000142751|HPRD:07665|Vega:OTTHUMG00000004227 1 1p36.11 GPN-loop GTPase 2 protein-coding GPN2 GPN-loop GTPase 2 O ATP binding domain 1 family, member B|ATP-binding domain 1 family member B 20121230 -9606 54708 MARCH5 RP11-543N17.3 MARCH-V|MITOL|RNF153 HGNC:26025|MIM:610637|Ensembl:ENSG00000198060|HPRD:07909|Vega:OTTHUMG00000018757 10 10q23.32-q23.33 membrane-associated ring finger (C3HC4) 5 protein-coding MARCH5 membrane-associated ring finger (C3HC4) 5 O E3 ubiquitin-protein ligase MARCH5|membrane-associated RING finger protein 5|membrane-associated RING-CH protein V|mitochondrial ubiquitin ligase|ring finger protein 153 20121230 -9606 54714 CNGB3 - - HGNC:2153|MIM:605080|Ensembl:ENSG00000170289|HPRD:05468|Vega:OTTHUMG00000163738 8 8q21.3 cyclic nucleotide gated channel beta 3 protein-coding CNGB3 cyclic nucleotide gated channel beta 3 O CNG channel beta-3|cone photoreceptor cGMP-gated cation channel beta-subunit|cyclic nucleotide-gated cation channel beta-3|cyclic nucleotide-gated cation channel modulatory subunit 20121230 -9606 54715 RBFOX1 - 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 HGNC:18222|MIM:605104|Ensembl:ENSG00000078328|HPRD:16091|Vega:OTTHUMG00000129551 16 16p13.3 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 O RNA binding protein fox-1 homolog 1|ataxin 2-binding protein 1|fox-1 homolog A|hexaribonucleotide-binding protein 1 20121230 -9606 54716 SLC6A20 - SIT1|XT3|Xtrp3 HGNC:30927|MIM:605616|Ensembl:ENSG00000163817|HPRD:16128|Vega:OTTHUMG00000133446 3 3p21.3 solute carrier family 6 (proline IMINO transporter), member 20 protein-coding SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 O X transporter protein 3|neurotransmitter transporter RB21A|orphan transporter XT3|sodium- and chloride-dependent transporter XTRP3|sodium/imino-acid transporter 1|solute carrier family 6 (neurotransmitter transporter), member 20|transporter rB21A homolog 20121230 -9606 54718 BTN2A3P RP1-45P21.3 BTN2A3 HGNC:13229|MIM:613592|HPRD:12546 6 6p22.1 butyrophilin, subfamily 2, member A3, pseudogene pseudo BTN2A3P butyrophilin, subfamily 2, member A3, pseudogene O - 20121230 -9606 54719 RNANC - NCRNA MIM:221900 10 10q21 Retinal nonattachment, nonsyndromic congenital unknown - - - - 20120622 -9606 54726 OTUD4 - DUBA6|HIN1|HSHIN1 HGNC:24949|MIM:611744|Ensembl:ENSG00000164164|HPRD:11033|Vega:OTTHUMG00000161480 4 4q31.21 OTU domain containing 4 protein-coding OTUD4 OTU domain containing 4 O HIV-1 induced protein HIN-1|HIV-1-induced protein HIN-1|OTU domain-containing protein 4 20121230 -9606 54729 NKX1-1 - HSPX153|NKX-1.1|SAX2 HGNC:24975 4 4p16.3 NK1 homeobox 1 protein-coding NKX1-1 NK1 homeobox 1 O HPX-153 homeobox|NK1 transcription factor related, locus 1|NK1 transcription factor-related protein 1|homeobox protein 153|homeobox protein SAX-2 20121106 -9606 54732 TMED9 - GMP25|HSGP25L2G|p25 HGNC:24878|Ensembl:ENSG00000184840|HPRD:09975|Vega:OTTHUMG00000130859 5 5q35.3 transmembrane emp24 protein transport domain containing 9 protein-coding TMED9 transmembrane emp24 protein transport domain containing 9 O glycoprotein 25L2|gp25L2 protein|p24 family protein alpha-2|p24alpha2|transmembrane emp24 domain-containing protein 9 20121230 -9606 54733 SLC35F2 - HSNOV1 HGNC:23615|Ensembl:ENSG00000110660|HPRD:15377|Vega:OTTHUMG00000166366 11 11q22.3 solute carrier family 35, member F2 protein-coding SLC35F2 solute carrier family 35, member F2 O lung squamous cell cancer related protein LSCC-3|solute carrier family 35 member F2 20121230 -9606 54734 RAB39A - RAB39 HGNC:16521|Ensembl:ENSG00000179331|HPRD:11470|Vega:OTTHUMG00000166367 11 11q22.3 RAB39A, member RAS oncogene family protein-coding RAB39A RAB39A, member RAS oncogene family O RAB39, member RAS oncogene family|rab-39|rab-related GTP-binding protein|ras-related protein Rab-39A 20121230 -9606 54737 MPHOSPH8 RP11-523H24.1 HSMPP8|TWA3|mpp8 HGNC:29810|MIM:611626|Ensembl:ENSG00000196199|HPRD:13682|Vega:OTTHUMG00000016498 13 13q12.11 M-phase phosphoprotein 8 protein-coding MPHOSPH8 M-phase phosphoprotein 8 O M-phase phosphoprotein, mpp|M-phase phosphoprotein, mpp8|two hybrid-associated protein 3 with RanBPM 20121230 -9606 54738 FEV - HSRNAFEV|PET-1 HGNC:18562|MIM:607150|Ensembl:ENSG00000163497|HPRD:06193|Vega:OTTHUMG00000133080 2 2q36 FEV (ETS oncogene family) protein-coding FEV FEV (ETS oncogene family) O PC12 ETS domain-containing transcription factor 1|fifth Ewing variant protein|protein FEV 20121230 -9606 54739 XAF1 - BIRC4BP|HSXIAPAF1|XIAPAF1 HGNC:30932|MIM:606717|Ensembl:ENSG00000132530|HPRD:06978|Vega:OTTHUMG00000177908 17 17p13.1 XIAP associated factor 1 protein-coding XAF1 XIAP associated factor 1 O BIRC4 binding protein|BIRC4-binding protein|XIAP-associated factor 1 20121230 -9606 54741 LEPROT - LEPR|OB-RGRP|OBRGRP|VPS55 HGNC:29477|MIM:613461|Ensembl:ENSG00000213625|HPRD:13987|Vega:OTTHUMG00000009065 1 1p31.3 leptin receptor overlapping transcript protein-coding LEPROT leptin receptor overlapping transcript O DnaJ (Hsp40) homolog, subfamily C, member 6|OB-R gene-related protein|leptin receptor gene related protein|leptin receptor gene-related protein|leptin receptor overlapping transcript protein 20121230 -9606 54742 LY6K - CT97|HSJ001348|ly-6K HGNC:24225|Ensembl:ENSG00000160886|HPRD:17457|Vega:OTTHUMG00000164720 8 8q24.3 lymphocyte antigen 6 complex, locus K protein-coding LY6K lymphocyte antigen 6 complex, locus K O cancer/testis antigen 97|lymphocyte antigen 6K 20121230 -9606 54748 LINC00527 - C21orf104 HGNC:17215 21 - long intergenic non-protein coding RNA 527 unknown LINC00527 long intergenic non-protein coding RNA 527 O - 20120508 -9606 54749 EPDR1 - EPDR|MERP-1|MERP1|UCC1 HGNC:17572|Ensembl:ENSG00000086289|HPRD:16865|Vega:OTTHUMG00000102187 7 7p14.1 ependymin related protein 1 (zebrafish) protein-coding EPDR1 ependymin related protein 1 (zebrafish) O mammalian ependymin related protein 1|mammalian ependymin-related protein 1|upregulated in colorectal cancer gene 1 protein 20121230 -9606 54751 FBLIM1 RP11-169K16.5 CAL|FBLP-1|FBLP1 HGNC:24686|MIM:607747|Ensembl:ENSG00000162458|HPRD:09669|Vega:OTTHUMG00000003079 1 1p36.21 filamin binding LIM protein 1 protein-coding FBLIM1 filamin binding LIM protein 1 O CSX-associated LIM|MIG2-interacting protein|filamin-binding LIM protein 1|filamin-binding LIM protein-1|migfilin|mitogen-inducible 2 interacting protein|mitogen-inducible 2-interacting protein 20121230 -9606 54752 FNDC8 - - HGNC:25286|Ensembl:ENSG00000073598|HPRD:13191|Vega:OTTHUMG00000132932 17 17q12 fibronectin type III domain containing 8 protein-coding FNDC8 fibronectin type III domain containing 8 O fibronectin type III domain-containing protein 8 20121230 -9606 54753 ZNF853 - - HGNC:21767|Ensembl:ENSG00000236609|Vega:OTTHUMG00000151853 7 7p22.1 zinc finger protein 853 protein-coding ZNF853 zinc finger protein 853 O - 20121230 -9606 54754 FAM22F - - HGNC:23450|Ensembl:ENSG00000130950|Vega:OTTHUMG00000020260 9 9q22.32 family with sequence similarity 22, member F protein-coding FAM22F family with sequence similarity 22, member F O protein FAM22F 20121230 -9606 54756 IL17RD UNQ6115/PRO20026 IL-17RD|IL17RLM|SEF HGNC:17616|MIM:606807|Ensembl:ENSG00000144730|Vega:OTTHUMG00000150171 3 3p14.3 interleukin 17 receptor D protein-coding IL17RD interleukin 17 receptor D O IL-17 receptor D|IL17Rhom|hSef|interleukin-17 receptor D|interleukin-17 receptor-like protein|sef homolog 20121230 -9606 54757 FAM20A UNQ9388/PRO34279 AIGFS|FP2747 HGNC:23015|MIM:611062|Ensembl:ENSG00000108950|HPRD:13296|Vega:OTTHUMG00000180152 17 17q24.2 family with sequence similarity 20, member A protein-coding FAM20A family with sequence similarity 20, member A O protein FAM20A 20121230 -9606 54758 KLHDC4 - - HGNC:25272|Ensembl:ENSG00000104731|HPRD:11180|Vega:OTTHUMG00000137657 16 16q24.3 kelch domain containing 4 protein-coding KLHDC4 kelch domain containing 4 O kelch domain-containing protein 4 20121230 -9606 54759 HSA251708 - - - - - microtubule-binding protein-like unknown - - - - 20120710 -9606 54760 PCSK4 UNQ2757/PRO6496 PC4|SPC5 HGNC:8746|MIM:600487|Ensembl:ENSG00000115257|Vega:OTTHUMG00000128541 19 19p13.3 proprotein convertase subtilisin/kexin type 4 protein-coding PCSK4 proprotein convertase subtilisin/kexin type 4 O - 20121230 -9606 54762 GRAMD1C UNQ2543/PRO6095 - HGNC:25252|Ensembl:ENSG00000178075|Vega:OTTHUMG00000159340 3 3q13.31 GRAM domain containing 1C protein-coding GRAMD1C GRAM domain containing 1C O GRAM domain-containing protein 1C 20121230 -9606 54763 ROPN1 - CT91|ODF6|RHPNAP1|ROPN1A|ropporin HGNC:17692|MIM:611757|Ensembl:ENSG00000065371|HPRD:15269|Vega:OTTHUMG00000159556 3 3q21.1 rhophilin associated tail protein 1 protein-coding ROPN1 rhophilin associated tail protein 1 O cancer/testis antigen 91|outer dense fiber of sperm tails 6|rhophilin-associated protein 1A|ropporin, rhophilin associated protein 1|ropporin-1A 20121230 -9606 54764 ZRANB1 - TRABID HGNC:18224|MIM:611749|Ensembl:ENSG00000019995|HPRD:11738|Vega:OTTHUMG00000019223 10 10q26.13 zinc finger, RAN-binding domain containing 1 protein-coding ZRANB1 zinc finger, RAN-binding domain containing 1 O TRAF-binding domain-containing protein|TRAF-binding protein domain|hTrabid|ubiquitin thioesterase ZRANB1|zinc finger Ran-binding domain-containing protein 1 20121230 -9606 54765 TRIM44 - DIPB|HSA249128|MC7 HGNC:19016|MIM:612298|Ensembl:ENSG00000166326|HPRD:15561|Vega:OTTHUMG00000166312 11 11p13 tripartite motif containing 44 protein-coding TRIM44 tripartite motif containing 44 O tripartite motif-containing 44|tripartite motif-containing protein 44 20121230 -9606 54766 BTG4 - PC3B HGNC:13862|MIM:605673|Ensembl:ENSG00000137707|HPRD:16138|Vega:OTTHUMG00000166718 11 11q23 B-cell translocation gene 4 protein-coding BTG4 B-cell translocation gene 4 O BTG family member 4|protein BTG4|protein PC3b 20121230 -9606 54768 HYDIN - CILD5|HYDIN1|HYDIN2|PPP1R31 HGNC:19368|MIM:610812|Ensembl:ENSG00000157423|HPRD:11042|Vega:OTTHUMG00000137584 16 16q22.2 HYDIN, axonemal central pair apparatus protein protein-coding HYDIN HYDIN, axonemal central pair apparatus protein O hydrocephalus inducing homolog|hydrocephalus-inducing protein homolog|protein phosphatase 1, regulatory subunit 31 20121230 -9606 54769 DIRAS2 - Di-Ras2 HGNC:19323|MIM:607863|Ensembl:ENSG00000165023|HPRD:09711|Vega:OTTHUMG00000020196 9 9q22.2 DIRAS family, GTP-binding RAS-like 2 protein-coding DIRAS2 DIRAS family, GTP-binding RAS-like 2 O GTP-binding protein Di-Ras2|distinct subgroup of the Ras family member 2 20121230 -9606 54776 PPP1R12C - LENG3|MBS85|p84|p85 HGNC:14947|MIM:613245|Ensembl:ENSG00000125503|HPRD:11452|Vega:OTTHUMG00000180540 19 19q13.42 protein phosphatase 1, regulatory subunit 12C protein-coding PPP1R12C protein phosphatase 1, regulatory subunit 12C O leukocyte receptor cluster (LRC) encoded novel gene 3|leukocyte receptor cluster (LRC) member 3|myosin-binding subunit 85|protein phosphatase 1 myosin-binding subunit of 85 kDa|protein phosphatase 1 myosin-binding subunit p85|protein phosphatase 1 regulatory subunit 12C|protein phosphatase 1, regulatory (inhibitor) subunit 12C 20121230 -9606 54777 TTC40 RP11-288G11.4 C10orf123|C10orf124|C10orf92|C10orf93|RP13-137A17.3|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3 HGNC:25247|Ensembl:ENSG00000171811|HPRD:12596|Vega:OTTHUMG00000019292 10 10q26.3 tetratricopeptide repeat domain 40 protein-coding TTC40 tetratricopeptide repeat domain 40 O TPR repeat-containing protein C10orf93|tetratricopeptide repeat protein 40 20121230 -9606 54778 RNF111 - ARK HGNC:17384|MIM:605840|Ensembl:ENSG00000157450|HPRD:09318|Vega:OTTHUMG00000132716 15 15q21 ring finger protein 111 protein-coding RNF111 ring finger protein 111 O Arkadia|E3 ubiquitin-protein ligase Arkadia 20121230 -9606 54780 NSMCE4A PP4762 C10orf86|NS4EA|NSE4A HGNC:25935|MIM:612987|Ensembl:ENSG00000107672|HPRD:16585|Vega:OTTHUMG00000019180 10 10q26.13 non-SMC element 4 homolog A (S. cerevisiae) protein-coding NSMCE4A non-SMC element 4 homolog A (S. cerevisiae) O non-structural maintenance of chromosomes element 4 homolog A 20121230 -9606 54784 ALKBH4 - ABH4 HGNC:21900|MIM:613302|Ensembl:ENSG00000160993|HPRD:07875|Vega:OTTHUMG00000157720 7 7q22.1 alkB, alkylation repair homolog 4 (E. coli) protein-coding ALKBH4 alkB, alkylation repair homolog 4 (E. coli) O alkylated DNA repair protein alkB homolog 4|probable alpha-ketoglutarate-dependent dioxygenase ABH4 20121230 -9606 54785 C17orf59 - PRO2472 HGNC:25939|Ensembl:ENSG00000196544|HPRD:13368|Vega:OTTHUMG00000153930 17 17p13.1 chromosome 17 open reading frame 59 protein-coding C17orf59 chromosome 17 open reading frame 59 O uncharacterized protein C17orf59 20121230 -9606 54788 DNAJB12 - DJ10 HGNC:14891|MIM:608376|Ensembl:ENSG00000148719|HPRD:07086|Vega:OTTHUMG00000018436 10 10q22.1 DnaJ (Hsp40) homolog, subfamily B, member 12 protein-coding DNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 12 O dnaJ homolog subfamily B member 12 20121230 -9606 54790 TET2 Nbla00191 KIAA1546|MDS HGNC:25941|MIM:612839|Ensembl:ENSG00000168769|HPRD:07876|Vega:OTTHUMG00000131213 4 4q24 tet methylcytosine dioxygenase 2 protein-coding TET2 tet methylcytosine dioxygenase 2 O methylcytosine dioxygenase TET2|probable methylcytosine dioxygenase TET2|tet oncogene family member 2 20121230 -9606 54793 KCTD9 - - HGNC:22401|Ensembl:ENSG00000104756|HPRD:13772|Vega:OTTHUMG00000099428 8 8p21.1 potassium channel tetramerisation domain containing 9 protein-coding KCTD9 potassium channel tetramerisation domain containing 9 O BTB/POZ domain-containing protein KCTD9 20121230 -9606 54795 TRPM4 - PFHB1B|TRPM4B HGNC:17993|MIM:606936|Ensembl:ENSG00000130529|HPRD:09502 19 19q13.33 transient receptor potential cation channel, subfamily M, member 4 protein-coding TRPM4 transient receptor potential cation channel, subfamily M, member 4 O LTrpC4|calcium-activated non-selective cation channel 1|hTRPM4|long transient receptor potential channel 4|melastatin-4|transient receptor potential cation channel subfamily M member 4 20121230 -9606 54796 BNC2 RP11-183I6.1 BSN2 HGNC:30988|MIM:608669|Ensembl:ENSG00000173068|HPRD:12274|Vega:OTTHUMG00000019593 9 9p22.2 basonuclin 2 protein-coding BNC2 basonuclin 2 O zinc finger protein basonuclin-2 20121230 -9606 54797 MED18 - p28b HGNC:25944|MIM:612384|Ensembl:ENSG00000130772|HPRD:17476|Vega:OTTHUMG00000003537 1 1p35.3 mediator complex subunit 18 protein-coding MED18 mediator complex subunit 18 O TRAP/mediator complex subunit p28b|mediator of RNA polymerase II transcription subunit 18|mediator of RNA polymerase II transcription, subunit 18 homolog 20121230 -9606 54798 DCHS2 - CDH27|CDHJ|CDHR7|PCDH23|PCDHJ HGNC:23111|MIM:612486|Ensembl:ENSG00000197410|HPRD:10858|Vega:OTTHUMG00000161556 4 4q31.3 dachsous 2 (Drosophila) protein-coding DCHS2 dachsous 2 (Drosophila) O cadherin-27|cadherin-like 27|cadherin-like protein CDHJ|cadherin-like protein VR8|cadherin-related family member 7|protein dachsous homolog 2|protocadherin 23|protocadherin PCDHJ|protocadherin-23 20121230 -9606 54799 MBTD1 - SA49P01 HGNC:19866|Ensembl:ENSG00000011258|HPRD:14369|Vega:OTTHUMG00000150442 17 17q21.33 mbt domain containing 1 protein-coding MBTD1 mbt domain containing 1 O MBT domain-containing protein 1 20121230 -9606 54800 KLHL24 - DRE1|KRIP6 HGNC:25947|MIM:611295|Ensembl:ENSG00000114796|HPRD:16838|Vega:OTTHUMG00000156911 3 3q27.1 kelch-like 24 (Drosophila) protein-coding KLHL24 kelch-like 24 (Drosophila) O kainate receptor interacting protein for GluR6|kainate receptor-interacting protein for GluR6|kelch-like protein 24 20121230 -9606 54801 HAUS6 RP11-296P7.3 Dgt6|FAM29A HGNC:25948|MIM:613433|Ensembl:ENSG00000147874|HPRD:13302|Vega:OTTHUMG00000019622 9 9p22.1 HAUS augmin-like complex, subunit 6 protein-coding HAUS6 HAUS augmin-like complex, subunit 6 O HAUS augmin-like complex subunit 6|dim gamma-tubulin homolog|family with sequence similarity 29, member A 20121230 -9606 54802 TRIT1 RP1-118J21.3 IPT|MOD5 HGNC:20286|Ensembl:ENSG00000043514|HPRD:18226|Vega:OTTHUMG00000009245 1 1p34.2 tRNA isopentenyltransferase 1 protein-coding TRIT1 tRNA isopentenyltransferase 1 O IPP transferase|IPPT|IPTase|hGRO1|isopentenyl-diphosphate:tRNA isopentenyltransferase|tRNA dimethylallyltransferase, mitochondrial|tRNA isopentenylpyrophosphate transferase 20121230 -9606 54805 CNNM2 RP11-30H12.1 ACDP2 HGNC:103|MIM:607803|Ensembl:ENSG00000148842|HPRD:07418|Vega:OTTHUMG00000018976 10 10q24.32 cyclin M2 protein-coding CNNM2 cyclin M2 O ancient conserved domain-containing protein 2|metal transporter CNNM2 20121230 -9606 54806 AHI1 RP1-32B1.2 AHI-1|JBTS3|ORF1|dJ71N10.1 HGNC:21575|MIM:608894|Ensembl:ENSG00000135541|HPRD:10597|Vega:OTTHUMG00000015631 6 6q23.3 Abelson helper integration site 1 protein-coding AHI1 Abelson helper integration site 1 O abelson helper integration site 1 protein homolog|contatins SH3 and WD40 domains|jouberin 20121230 -9606 54807 ZNF586 - - HGNC:25949|Ensembl:ENSG00000083828|HPRD:15863 19 19q13.43 zinc finger protein 586 protein-coding ZNF586 zinc finger protein 586 O - 20121230 -9606 54808 DYM - DMC|SMC HGNC:21317|MIM:607461|Ensembl:ENSG00000141627|HPRD:08469|Vega:OTTHUMG00000132659 18 18q21.1 dymeclin protein-coding DYM dymeclin O dyggve-Melchior-Clausen syndrome protein 20121230 -9606 54809 SAMD9 - C7orf5|DRIF1|NFTC|OEF1|OEF2 HGNC:1348|MIM:610456|Ensembl:ENSG00000205413|HPRD:11531|Vega:OTTHUMG00000155809 7 7q21.2 sterile alpha motif domain containing 9 protein-coding SAMD9 sterile alpha motif domain containing 9 O SAM domain-containing protein 9|expressed in aggressive fibromatosis|sterile alpha motif domain-containing protein 9 20121230 -9606 54810 GIPC2 - SEMCAP-2|SEMCAP2 HGNC:18177|Ensembl:ENSG00000137960|HPRD:17040|Vega:OTTHUMG00000041145 1 1p31.1 GIPC PDZ domain containing family, member 2 protein-coding GIPC2 GIPC PDZ domain containing family, member 2 O PDZ domain protein GIPC2|PDZ domain-containing protein GIPC2|semaF cytoplasmic domain associated protein 2|semaphorin cytoplasmic domain associated protein 2 20121230 -9606 54811 ZNF562 - - HGNC:25950|Ensembl:ENSG00000171466|HPRD:15844|Vega:OTTHUMG00000180205 19 19p13.2 zinc finger protein 562 protein-coding ZNF562 zinc finger protein 562 O - 20121230 -9606 54812 AFTPH - Nbla10388 HGNC:25951|Ensembl:ENSG00000119844|HPRD:10635|Vega:OTTHUMG00000129539 2 2p14 aftiphilin protein-coding AFTPH aftiphilin O aftiphilin protein 20121230 -9606 54813 KLHL28 - BTBD5 HGNC:19741|Ensembl:ENSG00000179454|HPRD:12539|Vega:OTTHUMG00000140263 14 14q21.2 kelch-like 28 (Drosophila) protein-coding KLHL28 kelch-like 28 (Drosophila) O BTB (POZ) domain containing 5|BTB/POZ domain-containing protein 5|kelch-like protein 28 20121230 -9606 54814 QPCTL - gQC HGNC:25952|Ensembl:ENSG00000011478|HPRD:08612|Vega:OTTHUMG00000182131 19 19q13.32 glutaminyl-peptide cyclotransferase-like protein-coding QPCTL glutaminyl-peptide cyclotransferase-like O glutaminyl cyclase-like|glutaminyl-peptide cyclotransferase-like protein|golgi-resident glutaminyl-peptide cyclotransferase|isoQC 20121230 -9606 54815 GATAD2A - p66alpha HGNC:29989|MIM:614997|Ensembl:ENSG00000167491|HPRD:11741|Vega:OTTHUMG00000152541 19 19p13.11 GATA zinc finger domain containing 2A protein-coding GATAD2A GATA zinc finger domain containing 2A O GATA zinc finger domain-containing protein 2A|hp66alpha|p66 alpha|transcriptional repressor p66-alpha 20121230 -9606 54816 ZNF280D - SUHW4|ZNF634 HGNC:25953|Ensembl:ENSG00000137871|HPRD:15448|Vega:OTTHUMG00000172509 15 15q21.3 zinc finger protein 280D protein-coding ZNF280D zinc finger protein 280D O suppressor of hairy wing homolog 4|zinc finger protein 634 20121230 -9606 54819 ZCCHC10 - - HGNC:25954|Ensembl:ENSG00000155329|HPRD:15699|Vega:OTTHUMG00000129013 5 5q31.1 zinc finger, CCHC domain containing 10 protein-coding ZCCHC10 zinc finger, CCHC domain containing 10 O zinc finger CCHC domain-containing protein 10 20121230 -9606 54820 NDE1 - HOM-TES-87|LIS4|NUDE|NUDE1 HGNC:17619|MIM:609449|Ensembl:ENSG00000072864|HPRD:14815|Vega:OTTHUMG00000129885 16 16p13.11 nudE nuclear distribution E homolog 1 (A. nidulans) protein-coding NDE1 nudE nuclear distribution E homolog 1 (A. nidulans) O LIS1-interacting protein NUDE1, rat homolog|nuclear distribution protein nudE homolog 1|nudE nuclear distribution gene E homolog 1 20121230 -9606 54821 ERCC6L - PICH|RAD26L HGNC:20794|MIM:300687|Ensembl:ENSG00000186871|HPRD:10974|Vega:OTTHUMG00000021810 X Xq13.1 excision repair cross-complementing rodent repair deficiency, complementation group 6-like protein-coding ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like O ATP-dependent helicase ERCC6-like|DNA excision repair protein ERCC-6-like|Plk1-interacting checkpoint helicase|SNF2/RAD54 family protein|excision repair cross-complementing rodent repair deficiency complementation group 6 - like|excision repair protein ERCC6-like|tumor antigen BJ-HCC-15 20121230 -9606 54822 TRPM7 - ALSPDC|CHAK|CHAK1|LTRPC7|TRP-PLIK HGNC:17994|MIM:605692|Ensembl:ENSG00000092439|HPRD:10418|Vega:OTTHUMG00000172449 15 15q21 transient receptor potential cation channel, subfamily M, member 7 protein-coding TRPM7 transient receptor potential cation channel, subfamily M, member 7 O LTRPC ion channel family member 7|LTrpC-7|channel-kinase 1|long transient receptor potential channel 7|transient receptor potential cation channel subfamily M member 7|transient receptor potential-phospholipase C-interacting kinase 20121230 -9606 54823 SWT1 RP4-635A23.1 C1orf26|HsSwt1 HGNC:16785|Ensembl:ENSG00000116668|HPRD:10726|Vega:OTTHUMG00000035390 1 1q25 SWT1 RNA endoribonuclease homolog (S. cerevisiae) protein-coding SWT1 SWT1 RNA endoribonuclease homolog (S. cerevisiae) O transcriptional protein SWT1 20121230 -9606 54825 CDHR2 - PCDH24|PCLKC HGNC:18231|Ensembl:ENSG00000074276|HPRD:15103|Vega:OTTHUMG00000163229 5 5q35.2 cadherin-related family member 2 protein-coding CDHR2 cadherin-related family member 2 O protocadherin 24|protocadherin-24 20121230 -9606 54826 GIN1 - GIN-1|TGIN1|ZH2C2 HGNC:25959|Ensembl:ENSG00000145723|HPRD:07878|Vega:OTTHUMG00000162811 5 5q21.1 gypsy retrotransposon integrase 1 protein-coding GIN1 gypsy retrotransposon integrase 1 O Ty3/Gypsy integrase 1|gypsy integrase 1|gypsy retrotransposon integrase-like protein 1|zinc finger H2C2 domain-containing protein|zinc finger, H2C2 domain containing 20121230 -9606 54827 NXPE4 UNQ3018/PRO9799 C11orf33|FAM55D HGNC:23117|Ensembl:ENSG00000137634|HPRD:12607|Vega:OTTHUMG00000168291 11 11q23.2 neurexophilin and PC-esterase domain family, member 4 protein-coding NXPE4 neurexophilin and PC-esterase domain family, member 4 O NXPE family member 4|family with sequence similarity 55, member D|protein FAM55D 20121230 -9606 54828 BCAS3 - GAOB1|MAAB HGNC:14347|MIM:607470|Ensembl:ENSG00000141376|HPRD:06313|Vega:OTTHUMG00000180064 17 17q23 breast carcinoma amplified sequence 3 protein-coding BCAS3 breast carcinoma amplified sequence 3 O BCAS4/BCAS3 fusion|breast carcinoma amplified sequence 4/3 fusion protein|breast carcinoma-amplified sequence 3|metastasis associated antigen of breast cancer|protein Maab1 20121230 -9606 54829 ASPN RP11-77D6.3 OS3|PLAP-1|PLAP1|SLRR1C HGNC:14872|MIM:608135|Ensembl:ENSG00000106819|HPRD:16288|Vega:OTTHUMG00000020227 9 9q22 asporin protein-coding ASPN asporin O asporin (LRR class 1)|asporin proteoglycan|periodontal ligament associated protein 1|small leucine-rich protein 1C 20121230 -9606 54830 NUP62CL RP13-383K5.2 - HGNC:25960|Ensembl:ENSG00000198088|HPRD:06527|Vega:OTTHUMG00000022159 X Xq22.3 nucleoporin 62kDa C-terminal like protein-coding NUP62CL nucleoporin 62kDa C-terminal like O nucleoporin-62 C-terminal-like protein 20121230 -9606 54831 BEST2 - VMD2L1 HGNC:17107|MIM:607335|Ensembl:ENSG00000039987|Vega:OTTHUMG00000169293 19 19p13.2 bestrophin 2 protein-coding BEST2 bestrophin 2 O VMD2-like gene 1|bestrophin-2|vitelliform macular dystrophy 2-like 1|vitelliform macular dystrophy 2-like protein 1 20121230 -9606 54832 VPS13C - - HGNC:23594|MIM:608879|Ensembl:ENSG00000129003|HPRD:12323|Vega:OTTHUMG00000132801 15 15q22.2 vacuolar protein sorting 13 homolog C (S. cerevisiae) protein-coding VPS13C vacuolar protein sorting 13 homolog C (S. cerevisiae) O vacuolar protein sorting-associated protein 13C 20121230 -9606 54834 GDAP2 - MACROD3|dJ776P7.1 HGNC:18010|Ensembl:ENSG00000196505|HPRD:06576|Vega:OTTHUMG00000012199 1 1p12 ganglioside induced differentiation associated protein 2 protein-coding GDAP2 ganglioside induced differentiation associated protein 2 O ganglioside-induced differentiation-associated protein 2 20121230 -9606 54836 BSPRY - - HGNC:18232|Ensembl:ENSG00000119411|HPRD:16566|Vega:OTTHUMG00000021006 9 9q32 B-box and SPRY domain containing protein-coding BSPRY B-box and SPRY domain containing O B box and SPRY domain-containing protein|B-box and SPRY-domain containing protein|zetin 1 20121230 -9606 54838 WBP1L RP11-753C18.10-001 C10orf26|OPA1L|OPAL1 HGNC:23510|MIM:611129|Ensembl:ENSG00000166272|HPRD:12567|Vega:OTTHUMG00000018968 10 10q24.32 WW domain binding protein 1-like protein-coding WBP1L WW domain binding protein 1-like O outcome predictor in acute leukemia 1 20121230 -9606 54839 LRRC49 - - HGNC:25965|Ensembl:ENSG00000137821|HPRD:07880|Vega:OTTHUMG00000172182 15 15q23 leucine rich repeat containing 49 protein-coding LRRC49 leucine rich repeat containing 49 O PGs4|leucine-rich repeat-containing protein 49|tubulin polyglutamylase complex subunit 4 20121230 -9606 54840 APTX RP11-562M8.1 AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT HGNC:15984|MIM:606350|Ensembl:ENSG00000137074|HPRD:05892|Vega:OTTHUMG00000019759 9 9p13.3 aprataxin protein-coding APTX aprataxin O forkhead-associated domain histidine triad-like protein 20121230 -9606 54841 BIVM RP11-484I6.1 - HGNC:16034|Ensembl:ENSG00000134897|HPRD:09827|Vega:OTTHUMG00000017309 13 13q33.1 basic, immunoglobulin-like variable motif containing protein-coding BIVM basic, immunoglobulin-like variable motif containing O basic immunoglobulin-like variable motif-containing protein 20121230 -9606 54842 MFSD6 - MMR2|hMMR2 HGNC:24711|MIM:613476|Ensembl:ENSG00000151690|HPRD:13369|Vega:OTTHUMG00000132671 2 2q32.2 major facilitator superfamily domain containing 6 protein-coding MFSD6 major facilitator superfamily domain containing 6 O macrophage MHC class I receptor 2 homolog|macrophage MHC receptor 2|major facilitator superfamily domain-containing protein 6 20121230 -9606 54843 SYTL2 - CHR11SYT|EXO4|SGA72M|SLP2|SLP2A HGNC:15585|MIM:612880|Ensembl:ENSG00000137501|HPRD:10260|Vega:OTTHUMG00000166977 11 11q14 synaptotagmin-like 2 protein-coding SYTL2 synaptotagmin-like 2 O breast cancer-associated antigen SGA-72M|chromosome 11 synaptotagmin|exophilin-4|synaptotagmin-like protein 2 20121230 -9606 54845 ESRP1 - RBM35A|RMB35A HGNC:25966|MIM:612959|Ensembl:ENSG00000104413|HPRD:07881|Vega:OTTHUMG00000164587 8 8q22.1 epithelial splicing regulatory protein 1 protein-coding ESRP1 epithelial splicing regulatory protein 1 O RNA binding motif protein 35A|RNA-binding motif protein 35A|RNA-binding protein 35A 20121230 -9606 54847 SIDT1 - B830021E24Rik|SID-1|SID1 HGNC:25967|MIM:606816|Ensembl:ENSG00000072858|HPRD:12111|Vega:OTTHUMG00000159299 3 3q13.2 SID1 transmembrane family, member 1 protein-coding SIDT1 SID1 transmembrane family, member 1 O SID1 transmembrane family member 1 20121230 -9606 54848 ARHGEF38 - - HGNC:25968|Ensembl:ENSG00000236699|HPRD:08613|Vega:OTTHUMG00000154752 4 4q24 Rho guanine nucleotide exchange factor (GEF) 38 protein-coding ARHGEF38 Rho guanine nucleotide exchange factor (GEF) 38 O rho guanine nucleotide exchange factor 38 20121230 -9606 54849 DEF8 - - HGNC:25969|Ensembl:ENSG00000140995|HPRD:07882|Vega:OTTHUMG00000138989 16 16q24.3 differentially expressed in FDCP 8 homolog (mouse) protein-coding DEF8 differentially expressed in FDCP 8 homolog (mouse) O DEF-8|differentially expressed in FDCP 8 homolog 20121230 -9606 54850 FBXL12 - Fbl12 HGNC:13611|MIM:609079|Ensembl:ENSG00000127452|HPRD:12363|Vega:OTTHUMG00000180212 19 19p13.2 F-box and leucine-rich repeat protein 12 protein-coding FBXL12 F-box and leucine-rich repeat protein 12 O F-box protein FBL12|F-box/LRR-repeat protein 12 20121230 -9606 54851 ANKRD49 - FGIF|GBIF HGNC:25970|Ensembl:ENSG00000168876|HPRD:16893|Vega:OTTHUMG00000167793 11 11q21 ankyrin repeat domain 49 protein-coding ANKRD49 ankyrin repeat domain 49 O ankyrin repeat domain-containing protein 49|fetal globin-inducing factor 20121230 -9606 54852 PAQR5 - MPRG HGNC:29645|MIM:607781|Ensembl:ENSG00000137819|HPRD:08475|Vega:OTTHUMG00000133322 15 15q23 progestin and adipoQ receptor family member V protein-coding PAQR5 progestin and adipoQ receptor family member V O mPR gamma|membrane progestin receptor gamma|progestin and adipoQ receptor family member 5 20121230 -9606 54853 WDR55 - - HGNC:25971|Ensembl:ENSG00000120314|HPRD:08614|Vega:OTTHUMG00000129506 5 5q31.3 WD repeat domain 55 protein-coding WDR55 WD repeat domain 55 O WD repeat-containing protein 55 20121230 -9606 54854 FAM83E - - HGNC:25972|Ensembl:ENSG00000105523|HPRD:07883 19 19q13.33 family with sequence similarity 83, member E protein-coding FAM83E family with sequence similarity 83, member E O protein FAM83E 20121230 -9606 54855 FAM46C - - HGNC:24712|MIM:613952|Ensembl:ENSG00000183508|HPRD:13312|Vega:OTTHUMG00000013703 1 1p12 family with sequence similarity 46, member C protein-coding FAM46C family with sequence similarity 46, member C O protein FAM46C 20121230 -9606 54856 GON4L RP11-101O6.1 GON-4|GON4|RP11-243J18.4|YARP HGNC:25973|MIM:610393|Ensembl:ENSG00000116580|HPRD:13370|Vega:OTTHUMG00000014106 1 1q22 gon-4-like (C. elegans) protein-coding GON4L gon-4-like (C. elegans) O 2610100B20Rik|GON-4-like protein|YY1AP-related protein1|gon-4 homolog 20121230 -9606 54857 GDPD2 RP11-528B10.2 GDE3|OBDPF HGNC:25974|Ensembl:ENSG00000130055|HPRD:06528|Vega:OTTHUMG00000021776 X Xq13.1 glycerophosphodiester phosphodiesterase domain containing 2 protein-coding GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 O glycerophosphodiester phosphodiesterase 3|glycerophosphodiester phosphodiesterase domain-containing protein 2|glycerophosphoinositol inositolphosphodiesterase GDPD2|osteoblast differentiation promoting factor 20121230 -9606 54858 PGPEP1 - PGP|PGP-I|PGPI|Pcp HGNC:13568|MIM:610694|Ensembl:ENSG00000130517|HPRD:07141 19 19p13.11 pyroglutamyl-peptidase I protein-coding PGPEP1 pyroglutamyl-peptidase I O 5-oxoprolyl-peptidase|PAP-I|pyroglutamyl aminopeptidase I|pyroglutamyl-peptidase 1|pyrrolidone-carboxylate peptidase 20121230 -9606 54859 ELP6 - C3orf75|TMEM103 HGNC:25976|Ensembl:ENSG00000163832|HPRD:07884|Vega:OTTHUMG00000133521 3 3p21.31 elongator acetyltransferase complex subunit 6 protein-coding ELP6 elongator acetyltransferase complex subunit 6 O UPF0405 protein C3orf75|angiotonin-transactivated protein 1|elongator complex protein 6|elongator complex protein 6 homolog|transmembrane protein 103 20121230 -9606 54860 MS4A12 - Ms4a10 HGNC:13370|MIM:606550|Ensembl:ENSG00000071203|HPRD:08410|Vega:OTTHUMG00000165364 11 11q12 membrane-spanning 4-domains, subfamily A, member 12 protein-coding MS4A12 membrane-spanning 4-domains, subfamily A, member 12 O membrane-spanning 4-domains subfamily A member 12 20121230 -9606 54861 SNRK - HSNFRK HGNC:30598|MIM:612760|Ensembl:ENSG00000163788|HPRD:18082|Vega:OTTHUMG00000156491 3 3p22.1 SNF related kinase protein-coding SNRK SNF related kinase O SNF-1 related kinase|SNF-related serine/threonine-protein kinase|SNF1-related kinase 20121230 -9606 54862 CC2D1A - FREUD-1|Freud-1/Aki1|MRT3 HGNC:30237|MIM:610055|Ensembl:ENSG00000132024|HPRD:08616|Vega:OTTHUMG00000181852 19 19p13.12 coiled-coil and C2 domain containing 1A protein-coding CC2D1A coiled-coil and C2 domain containing 1A O Akt kinase-interacting protein 1|FRE under dual repression-binding protein 1|coiled-coil and C2 domain-containing protein 1A|five prime repressor element under dual repression-binding protein 1|five repressor element under dual repression-binding protein 1|mental retardation, nonsyndromic, autosomal recessive, 3|putative NF-kappa-B-activating protein 023N|putative NFkB activating protein 20121230 -9606 54863 TOR4A RP13-122B23.4 C9orf167 HGNC:25981|Ensembl:ENSG00000198113|HPRD:07886|Vega:OTTHUMG00000131779 9 9q34.3 torsin family 4, member A protein-coding TOR4A torsin family 4, member A O torsin family 4 member A|torsin family protein C9orf167|torsin-4A 20121230 -9606 54865 GPATCH4 RP11-284F21.4 GPATC4 HGNC:25982|Ensembl:ENSG00000160818|HPRD:13596|Vega:OTTHUMG00000033203 1 1q22 G patch domain containing 4 protein-coding GPATCH4 G patch domain containing 4 O G patch domain-containing protein 4 20121230 -9606 54866 PPP1R14D - CPI17-like|GBPI-1|GBPI1 HGNC:14953|MIM:613256|Ensembl:ENSG00000166143|HPRD:17891|Vega:OTTHUMG00000130064 15 15q15.1 protein phosphatase 1, regulatory (inhibitor) subunit 14D protein-coding PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D O PKC-dependent PP1 inhibitory protein|gastrointestinal and brain-specific PP1-inhibitory protein 1|gut and brain phosphatase inhibitor 1|protein phosphatase 1 regulatory subunit 14D 20121230 -9606 54867 TMEM214 PP446 - HGNC:25983|Ensembl:ENSG00000119777|HPRD:07887|Vega:OTTHUMG00000151999 2 2p23.3 transmembrane protein 214 protein-coding TMEM214 transmembrane protein 214 O - 20121230 -9606 54868 TMEM104 - - HGNC:25984|Ensembl:ENSG00000109066|HPRD:07888|Vega:OTTHUMG00000179025 17 17q25.1 transmembrane protein 104 protein-coding TMEM104 transmembrane protein 104 O - 20121230 -9606 54869 EPS8L1 PP10566 DRC3|EPS8R1 HGNC:21295|MIM:614987|Ensembl:ENSG00000131037|HPRD:13276|Vega:OTTHUMG00000180513 19 19q13.42 EPS8-like 1 protein-coding EPS8L1 EPS8-like 1 O EPS8-like protein 1|EPS8-related protein 1|epidermal growth factor receptor kinase substrate 8-like protein 1|epidermal growth factor receptor pathway substrate 8-related protein 1 20121230 -9606 54870 QRICH1 - - HGNC:24713|Ensembl:ENSG00000198218|HPRD:13372|Vega:OTTHUMG00000156772 3 3p21.31 glutamine-rich 1 protein-coding QRICH1 glutamine-rich 1 O glutamine-rich protein 1 20121230 -9606 54872 PIGG UNQ1930/PRO4405 GPI7|LAS21|PRO4405|RLGS1930 HGNC:25985|Ensembl:ENSG00000174227|HPRD:07890|Vega:OTTHUMG00000112457 4 4p16.3 phosphatidylinositol glycan anchor biosynthesis, class G protein-coding PIGG phosphatidylinositol glycan anchor biosynthesis, class G O GPI ethanolamine phosphate transferase 2|GPI7 homolog|PIG-G|hGPI7|phosphatidylinositol glycan, class G|phosphatidylinositol-glycan biosynthesis class G protein 20121230 -9606 54873 PALMD - C1orf11|PALML HGNC:15846|MIM:610182|Ensembl:ENSG00000099260|HPRD:06673|Vega:OTTHUMG00000010764 1 1p22-p21 palmdelphin protein-coding PALMD palmdelphin O paralemnin-like protein 20121230 -9606 54874 FNBP1L - C1orf39|TOCA1 HGNC:20851|MIM:608848|Ensembl:ENSG00000137942|HPRD:12317|Vega:OTTHUMG00000010863 1 1p22.1 formin binding protein 1-like protein-coding FNBP1L formin binding protein 1-like O formin-binding protein 1-like|toca-1|transducer of Cdc42-dependent actin assembly 1|transducer of Cdc42-dependent actin assembly protein 1 20121230 -9606 54875 CNTLN RP11-163F8.4 C9orf101|C9orf39|RP11-340N12.1|bA340N12.1 HGNC:23432|MIM:611870|Ensembl:ENSG00000044459|HPRD:10800|Vega:OTTHUMG00000019597|Vega:OTTHUMG00000019599 9 9p22.2 centlein, centrosomal protein protein-coding CNTLN centlein, centrosomal protein O centlein|centrosomal protein 20121230 -9606 54876 DCAF16 - C4orf30 HGNC:25987|Ensembl:ENSG00000163257|HPRD:07891|Vega:OTTHUMG00000128536 4 4p15.31 DDB1 and CUL4 associated factor 16 protein-coding DCAF16 DDB1 and CUL4 associated factor 16 O DDB1- and CUL4-associated factor 16 20121230 -9606 54877 ZCCHC2 - C18orf49 HGNC:22916|Ensembl:ENSG00000141664|HPRD:11696|Vega:OTTHUMG00000180165 18 18q21.33 zinc finger, CCHC domain containing 2 protein-coding ZCCHC2 zinc finger, CCHC domain containing 2 O zinc finger CCHC domain-containing protein 2 20121230 -9606 54878 DPP8 MSTP097 DP8|DPRP1|MSTP141 HGNC:16490|MIM:606819|Ensembl:ENSG00000074603|HPRD:07076|Vega:OTTHUMG00000133150 15 15q22 dipeptidyl-peptidase 8 protein-coding DPP8 dipeptidyl-peptidase 8 O DPP VIII|DPRP-1|dipeptidyl peptidase 8|dipeptidyl peptidase IV-related protein 1|dipeptidyl peptidase IV-related protein-1|dipeptidyl peptidase VIII|dipeptidylpeptidase 8|prolyl dipeptidase DPP8 20121230 -9606 54879 ST7L RP4-770C6.2 FAM4B|ST7R|STLR HGNC:18441|Ensembl:ENSG00000007341|HPRD:18112|Vega:OTTHUMG00000011753 1 1p13.2 suppression of tumorigenicity 7 like protein-coding ST7L suppression of tumorigenicity 7 like O ST7-related protein|suppressor of tumorigenicity 7 protein-like|tumor suppressor ST7 like 20121230 -9606 54880 BCOR - ANOP2|MAA2|MCOPS2 HGNC:20893|MIM:300485|Ensembl:ENSG00000183337|HPRD:06458|Vega:OTTHUMG00000024100 X Xp11.4 BCL6 corepressor protein-coding BCOR BCL6 corepressor O BCL-6 corepressor|BCL-6 interacting corepressor|BCL6 co-repressor 20121230 -9606 54881 TEX10 RP11-208F1.2 Ipi1|bA208F1.2 HGNC:25988|Ensembl:ENSG00000136891|HPRD:15489|Vega:OTTHUMG00000020366 9 9q31.1 testis expressed 10 protein-coding TEX10 testis expressed 10 O testis expressed gene 10|testis expressed sequence 10|testis-expressed sequence 10 protein 20121230 -9606 54882 ANKHD1 PP2500 MASK|VBARP HGNC:24714|MIM:610500|Ensembl:ENSG00000131503|HPRD:16489|Vega:OTTHUMG00000161610 5 5q31.3 ankyrin repeat and KH domain containing 1 protein-coding ANKHD1 ankyrin repeat and KH domain containing 1 O HIV-1 Vpr-binding ankyrin repeat protein|ankyrin repeat and KH domain-containing protein 1|multiple ankyrin repeats, single KH-domain homolog 20121230 -9606 54883 CWC25 - CCDC49 HGNC:25989|Ensembl:ENSG00000108296|HPRD:07892|Vega:OTTHUMG00000178485 17 17q12 CWC25 spliceosome-associated protein homolog (S. cerevisiae) protein-coding CWC25 CWC25 spliceosome-associated protein homolog (S. cerevisiae) O coiled-coil domain-containing protein 49|pre-mRNA-splicing factor CWC25 homolog 20121230 -9606 54884 RETSAT UNQ439/PRO872 - HGNC:25991|Ensembl:ENSG00000042445|HPRD:07893|Vega:OTTHUMG00000154611 2 2p11.2 retinol saturase (all-trans-retinol 13,14-reductase) protein-coding RETSAT retinol saturase (all-trans-retinol 13,14-reductase) O PPAR-alpha-regulated and starvation-induced gene protein|all-trans-13,14-dihydroretinol saturase|all-trans-retinol 13,14-reductase 20121230 -9606 54885 TBC1D8B RP11-321G1.1 - HGNC:24715|Ensembl:ENSG00000133138|HPRD:06529|Vega:OTTHUMG00000022152 X Xq22.3 TBC1 domain family, member 8B (with GRAM domain) protein-coding TBC1D8B TBC1 domain family, member 8B (with GRAM domain) O RP11-321G1.1|TBC1 domain family member 8B 20121230 -9606 54886 LPPR1 RP11-35N6.1 PRG-3 Ensembl:ENSG00000148123|HPRD:17906|Vega:OTTHUMG00000020373 9 9q31.1 lipid phosphate phosphatase-related protein type 1 protein-coding - - - plasticity related gene 3|plasticity-related gene 3 protein 20121230 -9606 54887 UHRF1BP1 RP3-349A12.1 C6orf107|ICBP90|dJ349A12.1 HGNC:21216|Ensembl:ENSG00000065060|HPRD:12838|Vega:OTTHUMG00000014557 6 6p21 UHRF1 binding protein 1 protein-coding UHRF1BP1 UHRF1 binding protein 1 O ICBP90 binding protein 1|ICBP90-binding protein 1|UHRF1 (ICBP90) binding protein 1|UHRF1-binding protein 1|ubiquitin-like containing PHD and RING finger domains 1-binding protein 1 20121230 -9606 54888 NSUN2 - MISU|MRT5|SAKI|TRM4 HGNC:25994|MIM:610916|Ensembl:ENSG00000037474|HPRD:08620|Vega:OTTHUMG00000090455 5 5p15.31 NOP2/Sun RNA methyltransferase family, member 2 protein-coding NSUN2 NOP2/Sun RNA methyltransferase family, member 2 O 5-methycytoisine methyltransferase|Myc-induced SUN-domain-containing protein|NOL1/NOP2/Sun domain family 2|NOL1/NOP2/Sun domain family member 2|NOL1/NOP2/Sun domain family, member 2|NOP2/Sun domain family, member 2|hTrm4|myc-induced SUN domain-containing protein|substrate of AIM1/Aurora kinase B|tRNA (cytosine(34)-C(5))-methyltransferase|tRNA (cytosine-5-)-methyltransferase NSUN2|tRNA methyltransferase 4 homolog 20121230 -9606 54890 ALKBH5 - ABH5|OFOXD|OFOXD1 HGNC:25996|MIM:613303|Ensembl:ENSG00000091542|HPRD:08621|Vega:OTTHUMG00000059397 17 17p11.2|17p11.2 alkB, alkylation repair homolog 5 (E. coli) protein-coding ALKBH5 alkB, alkylation repair homolog 5 (E. coli) O alkylated DNA repair protein alkB homolog 5|oxoglutarate and iron-dependent oxygenase domain containing|probable alpha-ketoglutarate-dependent dioxygenase ABH5 20121230 -9606 54891 INO80D - - HGNC:25997|Ensembl:ENSG00000114933|HPRD:07894|Vega:OTTHUMG00000154649 2 2q33.3 INO80 complex subunit D protein-coding INO80D INO80 complex subunit D O - 20121230 -9606 54892 NCAPG2 tcag7.1258 CAP-G2|LUZP5|MTB|hCAP-G2 HGNC:21904|MIM:608532|Ensembl:ENSG00000146918|HPRD:10539|Vega:OTTHUMG00000151438 7 7q36.3 non-SMC condensin II complex, subunit G2 protein-coding NCAPG2 non-SMC condensin II complex, subunit G2 O chromosome-associated protein G2|condensin-2 complex subunit G2|leucine zipper protein 5|more than blood homolog 20121230 -9606 54893 MTMR10 - - HGNC:25999|Ensembl:ENSG00000166912|HPRD:07895|Vega:OTTHUMG00000175662 15 15q13.3 myotubularin related protein 10 protein-coding MTMR10 myotubularin related protein 10 O myotubularin-related protein 10 20121230 -9606 54894 RNF43 - RNF124|URCC HGNC:18505|MIM:612482|Ensembl:ENSG00000108375|HPRD:07896|Vega:OTTHUMG00000179077 17 17q22 ring finger protein 43 protein-coding RNF43 ring finger protein 43 O E3 ubiquitin-protein ligase RNF43 20121230 -9606 54896 PQLC2 RP4-657E11.5 - HGNC:26001|MIM:614760|Ensembl:ENSG00000040487|HPRD:17896|Vega:OTTHUMG00000002521 1 1p36.13 PQ loop repeat containing 2 protein-coding PQLC2 PQ loop repeat containing 2 O PQ-loop repeat-containing protein 2|lysosomal amino acid transporter 1 homolog 20121230 -9606 54897 CASZ1 RP4-734G22.2 CAS11|CST|SRG|ZNF693|dJ734G22.1 HGNC:26002|MIM:609895|Ensembl:ENSG00000130940|HPRD:07897|Vega:OTTHUMG00000002035 1 1p36.22 castor zinc finger 1 protein-coding CASZ1 castor zinc finger 1 O castor homolog 1, zinc finger|castor-related protein|survival-related|zinc finger protein 693|zinc finger protein castor homolog 1 20121230 -9606 54898 ELOVL2 - SSC2 HGNC:14416|MIM:611814|Ensembl:ENSG00000197977|HPRD:16857|Vega:OTTHUMG00000014252 6 6p24.2 ELOVL fatty acid elongase 2 protein-coding ELOVL2 ELOVL fatty acid elongase 2 O 3-keto acyl-CoA synthase ELOVL2|ELOVL FA elongase 2|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2|elongation of very long chain fatty acids protein 2 20121230 -9606 54899 PXK - MONaKA HGNC:23326|MIM:611450|Ensembl:ENSG00000168297|HPRD:17936|Vega:OTTHUMG00000159149 3 3p14.3 PX domain containing serine/threonine kinase protein-coding PXK PX domain containing serine/threonine kinase O PX domain-containing protein kinase-like protein|PX ser/thr kinase v2|PX serine/threonine kinase|modulator of Na,K-ATPase long form 20121230 -9606 54900 LAX1 - LAX HGNC:26005|Ensembl:ENSG00000122188|HPRD:08312|Vega:OTTHUMG00000035908 1 1q32.1 lymphocyte transmembrane adaptor 1 protein-coding LAX1 lymphocyte transmembrane adaptor 1 O LAT-like membrane associated protein|linker for activation of x cells|lymphocyte transmembrane adapter 1|membrane-associated adapter protein LAX 20121230 -9606 54901 CDKAL1 - - HGNC:21050|MIM:611259|Ensembl:ENSG00000145996|HPRD:13022|Vega:OTTHUMG00000014340 6 6p22.3 CDK5 regulatory subunit associated protein 1-like 1 protein-coding CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 O tRNA-t(6)A37 methylthiotransferase|threonylcarbamoyladenosine tRNA methylthiotransferase 20121230 -9606 54902 TTC19 - 2010204O13Rik HGNC:26006|MIM:613814|Ensembl:ENSG00000011295|HPRD:07899|Vega:OTTHUMG00000059306 17 17p12 tetratricopeptide repeat domain 19 protein-coding TTC19 tetratricopeptide repeat domain 19 O TPR repeat protein 19|tetratricopeptide repeat protein 19, mitochondrial 20121230 -9606 54903 MKS1 - BBS13|MES|MKS|POC12 HGNC:7121|MIM:609883|Ensembl:ENSG00000011143|HPRD:07900|Vega:OTTHUMG00000133714 17 17q22 Meckel syndrome, type 1 protein-coding MKS1 Meckel syndrome, type 1 O FABB proteome-like protein|Meckel syndrome type 1 protein|POC12 centriolar protein homolog 20121230 -9606 54904 WHSC1L1 DC28 NSD3|pp14328 HGNC:12767|MIM:607083|Ensembl:ENSG00000147548|HPRD:06155|Vega:OTTHUMG00000165115 8 8p11.2 Wolf-Hirschhorn syndrome candidate 1-like 1 protein-coding WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 O WHSC1-like 1 isoform 9 with methyltransferase activity to lysine|WHSC1-like protein 1|histone-lysine N-methyltransferase NSD3|nuclear SET domain-containing protein 3|protein whistle 20121230 -9606 54905 CYP2W1 - - HGNC:20243|Ensembl:ENSG00000073067|HPRD:07901|Vega:OTTHUMG00000074071 7 7p22.3 cytochrome P450, family 2, subfamily W, polypeptide 1 protein-coding CYP2W1 cytochrome P450, family 2, subfamily W, polypeptide 1 O CYPIIW1|cytochrome P450 2W1 20121230 -9606 54906 FAM208B - C10orf18|bA318E3.2 HGNC:23484|Ensembl:ENSG00000108021|Vega:OTTHUMG00000017605 10 10p15.1 family with sequence similarity 208, member B protein-coding FAM208B family with sequence similarity 208, member B O protein FAM208B|uncharacterized protein C10orf18 20121230 -9606 54908 SPDL1 - CCDC99 HGNC:26010|Ensembl:ENSG00000040275|HPRD:08623|Vega:OTTHUMG00000130438 5 5q35.1 spindle apparatus coiled-coil protein 1 protein-coding SPDL1 spindle apparatus coiled-coil protein 1 O arsenite-related gene 1 protein|coiled-coil domain containing 99|coiled-coil domain-containing protein 99|hSpindly|protein Spindly|rhabdomyosarcoma antigen MU-RMS-40.4A|rrhabdomyosarcoma antigen protein MU-RMS-40.4A|spindly homolog 20121230 -9606 54910 SEMA4C UNQ5855/PRO34487 M-SEMA-F|SEMACL1|SEMAF|SEMAI HGNC:10731|MIM:604462|Ensembl:ENSG00000168758|HPRD:07257|Vega:OTTHUMG00000130535 2 2q11.2 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C protein-coding SEMA4C sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C O M-Sema F|semaphorin-4C 20121230 -9606 54913 RPP25 - - HGNC:30361|Ensembl:ENSG00000178718|HPRD:15276|Vega:OTTHUMG00000142822 15 15q24.2 ribonuclease P/MRP 25kDa subunit protein-coding RPP25 ribonuclease P/MRP 25kDa subunit O RNase P protein subunit p25|ribonuclease P 25kDa subunit|ribonuclease P protein subunit p25 20121230 -9606 54914 FOCAD - KIAA1797 HGNC:23377|MIM:614606|Ensembl:ENSG00000188352|HPRD:11162|Vega:OTTHUMG00000066930 9 9p21 focadhesin protein-coding FOCAD focadhesin O - 20121230 -9606 54915 YTHDF1 RP5-963E22.1 C20orf21 HGNC:15867|Ensembl:ENSG00000149658|HPRD:11691|Vega:OTTHUMG00000032955 20 20q13.33 YTH domain family, member 1 protein-coding YTHDF1 YTH domain family, member 1 O DACA-1|YTH domain family 1|YTH domain family protein 1|dermatomyositis associated with cancer putative autoantigen 1 20121230 -9606 54916 C14orf101 - - HGNC:20185|Ensembl:ENSG00000070269|HPRD:12624|Vega:OTTHUMG00000152337 14 14q22.3 chromosome 14 open reading frame 101 protein-coding C14orf101 chromosome 14 open reading frame 101 O UPF0679 protein C14orf101 20121230 -9606 54918 CMTM6 - CKLFSF6|PRO2219 HGNC:19177|MIM:607889|Ensembl:ENSG00000091317|HPRD:06987|Vega:OTTHUMG00000130747 3 3p22.3 CKLF-like MARVEL transmembrane domain containing 6 protein-coding CMTM6 CKLF-like MARVEL transmembrane domain containing 6 O CKLF-like MARVEL transmembrane domain-containing protein 6|chemokine-like factor super family 6|chemokine-like factor superfamily 6|chemokine-like factor superfamily member 6 20121230 -9606 54919 HEATR2 - CILD18 HGNC:26013|MIM:614864|Ensembl:ENSG00000164818|HPRD:07903|Vega:OTTHUMG00000151416 7 7p22.3 HEAT repeat containing 2 protein-coding HEATR2 HEAT repeat containing 2 O HEAT repeat-containing protein 2 20121230 -9606 54920 DUS2L - DUS2|SMM1|URLC8 HGNC:26014|MIM:609707|Ensembl:ENSG00000167264|HPRD:08624|Vega:OTTHUMG00000137538 16 16q22.1 dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) protein-coding DUS2L dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) O tRNA-dihydrouridine(20) synthase [NAD(P)+]-like|up-regulated in lung cancer protein 8 20121230 -9606 54921 CHTF8 - CTF8|DERPC HGNC:24353|MIM:613202|Ensembl:ENSG00000168802|HPRD:16797|Vega:OTTHUMG00000163909 16 16q22.1 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) protein-coding CHTF8 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) O chromosome transmission fidelity protein 8 homolog|decreased expression in renal and prostate cancer protein 20121230 -9606 54922 RASIP1 - RAIN HGNC:24716|MIM:609623|Ensembl:ENSG00000105538|HPRD:15214 19 19q13.33 Ras interacting protein 1 protein-coding RASIP1 Ras interacting protein 1 O ras-interacting protein 1 20121230 -9606 54923 LIME1 RP4-583P15.5 LIME|LP8067|dJ583P15.4 HGNC:26016|MIM:609809|Ensembl:ENSG00000203896|HPRD:07904|Vega:OTTHUMG00000032999 20 20q13.3 Lck interacting transmembrane adaptor 1 protein-coding LIME1 Lck interacting transmembrane adaptor 1 O lck-interacting membrane protein|lck-interacting molecule|lck-interacting transmembrane adapter 1 20121230 -9606 54925 ZNF434 HCCS5 - HGNC:20812|Ensembl:ENSG00000140987|HPRD:15791|Vega:OTTHUMG00000129357 16 16p13.3 zinc finger protein 434 protein-coding ZNF434 zinc finger protein 434 O HCCS-5|human cervical cancer suppressor gene 5 protein 20121230 -9606 54926 UBE2R2 RP11-176F3.4 CDC34B|E2-CDC34B|UBC3B HGNC:19907|MIM:612506|Ensembl:ENSG00000107341|HPRD:15602|Vega:OTTHUMG00000019797 9 9p13.3 ubiquitin-conjugating enzyme E2R 2 protein-coding UBE2R2 ubiquitin-conjugating enzyme E2R 2 O ubiquitin carrier protein R2|ubiquitin-conjugating enzyme E2 R2|ubiquitin-conjugating enzyme E2-CDC34B|ubiquitin-conjugating enzyme UBC3B|ubiquitin-protein ligase R2 20121230 -9606 54927 CHCHD3 - MINOS3|PPP1R22 HGNC:21906|MIM:613748|Ensembl:ENSG00000106554|HPRD:13044|Vega:OTTHUMG00000155231 7 7q33 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 O coiled-coil-helix-coiled-coil-helix domain-containing protein 3, mitochondrial|mitochondrial inner membrane organizing system 3|protein phosphatase 1, regulatory subunit 22 20121230 -9606 54928 IMPAD1 - GPAPP|IMP 3|IMP-3|IMPA3 HGNC:26019|MIM:614010|Ensembl:ENSG00000104331|HPRD:06531|Vega:OTTHUMG00000164415 8 8q12.1 inositol monophosphatase domain containing 1 protein-coding IMPAD1 inositol monophosphatase domain containing 1 O Golgi 3-prime phosphoadenosine 5-prime phosphate 3-prime phosphatase|IMPase 3|golgi-resident PAP phosphatase|inositol monophosphatase 3|inositol monophosphatase domain-containing protein 1|inositol-1(or 4)-monophosphatase 3|myo-inositol monophosphatase A3 20121230 -9606 54929 TMEM161A UNQ582/PRO1152 AROS-29 HGNC:26020|Ensembl:ENSG00000064545|HPRD:07905|Vega:OTTHUMG00000182217 19 19p13.11 transmembrane protein 161A protein-coding TMEM161A transmembrane protein 161A O - 20121230 -9606 54930 HAUS4 - C14orf94 HGNC:20163|MIM:613431|Ensembl:ENSG00000092036|HPRD:12663|Vega:OTTHUMG00000028710 14 14q11.2 HAUS augmin-like complex, subunit 4 protein-coding HAUS4 HAUS augmin-like complex, subunit 4 O HAUS augmin-like complex subunit 4|homologous to Augmin subunits 20121230 -9606 54931 TRMT10C - HNYA|MRPP1|RG9MTD1 HGNC:26022|Ensembl:ENSG00000174173|HPRD:15240|Vega:OTTHUMG00000159114 3 3q12.3 tRNA methyltransferase 10 homolog C (S. cerevisiae) protein-coding TRMT10C tRNA methyltransferase 10 homolog C (S. cerevisiae) O HBV pre-S2 trans-regulated protein 2|RNA (guanine-9-) methyltransferase domain containing 1|mitochondrial RNase P subunit 1|mitochondrial ribonuclease P protein 1|renal carcinoma antigen NY-REN-49 20121230 -9606 54932 EXD3 HBE269 mut-7 HGNC:26023|Ensembl:ENSG00000187609|HPRD:07906|Vega:OTTHUMG00000156149 9 9q34.3 exonuclease 3'-5' domain containing 3 protein-coding EXD3 exonuclease 3'-5' domain containing 3 O exonuclease 3'-5' domain-containing protein 3|probable exonuclease mut-7 homolog 20121230 -9606 54933 RHBDL2 - RRP2 HGNC:16083|MIM:608962|Ensembl:ENSG00000158315|HPRD:07151|Vega:OTTHUMG00000000487 1 1p34.3 rhomboid, veinlet-like 2 (Drosophila) protein-coding RHBDL2 rhomboid, veinlet-like 2 (Drosophila) O rhomboid (veinlet, Drosophila)-like 2|rhomboid protease 2|rhomboid-like protein 2|rhomboid-related protein 2 20121230 -9606 54934 KANSL2 - C12orf41|NSL2 HGNC:26024|Ensembl:ENSG00000139620|HPRD:07907|Vega:OTTHUMG00000170392 12 12q13.11 KAT8 regulatory NSL complex subunit 2 protein-coding KANSL2 KAT8 regulatory NSL complex subunit 2 O NSL complex protein NSL2|non-specific lethal 2 homolog 20121230 -9606 54935 DUSP23 - DUSP25|LDP-3|MOSP|RP11-190A12.1|VHZ HGNC:21480|Ensembl:ENSG00000158716|HPRD:07908|Vega:OTTHUMG00000022795 1 1q23.2 dual specificity phosphatase 23 protein-coding DUSP23 dual specificity phosphatase 23 O VH1-like member Z|VH1-like phosphatase Z|dual specificity protein phosphatase 23|low molecular mass dual specificity phosphatase 3|low-molecular-mass dual-specificity phosphatase 3 20121230 -9606 54936 ADPRHL2 - ARH3 HGNC:21304|MIM:610624|Ensembl:ENSG00000116863|HPRD:12432|Vega:OTTHUMG00000007628 1 1p34.3 ADP-ribosylhydrolase like 2 protein-coding ADPRHL2 ADP-ribosylhydrolase like 2 O ADP-ribosylhydrolase 3|[Protein ADP-ribosylarginine] hydrolase-like protein 2|poly(ADP-ribose) glycohydrolase ARH3|protein ADP-ribosylarginine hydrolase-like protein 2 20121230 -9606 54937 SOHLH2 - SPATA28|TEB1|bHLHe81 HGNC:26026|Ensembl:ENSG00000120669|HPRD:07910|Vega:OTTHUMG00000016728 13 13q13.3 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 O spermatogenesis associated 28|spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 20121230 -9606 54938 SARS2 - SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS HGNC:17697|MIM:612804|Ensembl:ENSG00000104835|HPRD:15295 19 19q13.2 seryl-tRNA synthetase 2, mitochondrial protein-coding SARS2 seryl-tRNA synthetase 2, mitochondrial O mitochondrial seryl-tRNA synthetase|serine tRNA ligase 2, mitochondrial|serine--tRNA ligase, mitochondrial|serine-tRNA ligase, mitochondrial|seryl-tRNA synthetase, mitochondrial|seryl-tRNA(Ser/Sec) synthetase 20121230 -9606 54939 COMMD4 - - HGNC:26027|Ensembl:ENSG00000140365|HPRD:13083|Vega:OTTHUMG00000142823 15 15q24.2 COMM domain containing 4 protein-coding COMMD4 COMM domain containing 4 O COMM domain-containing protein 4 20121230 -9606 54940 OCIAD1 - ASRIJ|OCIA|TPA018 HGNC:16074|Ensembl:ENSG00000109180|HPRD:17654|Vega:OTTHUMG00000102095 4 4p11 OCIA domain containing 1 protein-coding OCIAD1 OCIA domain containing 1 O OCIA domain-containing protein 1|ovarian carcinoma immunoreactive antigen 20121230 -9606 54941 RNF125 - TRAC-1|TRAC1 HGNC:21150|MIM:610432|Ensembl:ENSG00000101695|HPRD:11500|Vega:OTTHUMG00000132266 18 18q12.1 ring finger protein 125, E3 ubiquitin protein ligase protein-coding RNF125 ring finger protein 125, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RNF125|T-cell RING activation protein 1|T-cell ring protein identified in activation screen 20121230 -9606 54942 FAM206A - C9orf6|CG-8 HGNC:1364|Ensembl:ENSG00000119328|HPRD:07911|Vega:OTTHUMG00000020467 9 9q31.3 family with sequence similarity 206, member A protein-coding FAM206A family with sequence similarity 206, member A O protein FAM206A 20121230 -9606 54943 DNAJC28 - C21orf55|C21orf78 HGNC:1297|Ensembl:ENSG00000177692|HPRD:10752|Vega:OTTHUMG00000065531 21 21q22.11 DnaJ (Hsp40) homolog, subfamily C, member 28 protein-coding DNAJC28 DnaJ (Hsp40) homolog, subfamily C, member 28 O dnaJ homolog subfamily C member 28 20121230 -9606 54944 FLJ20464 - - - 22 22q12.2 uncharacterized protein FLJ20464 unknown - - - - 20121230 -9606 54946 SLC41A3 - SLC41A1-L2 HGNC:31046|MIM:610803|Ensembl:ENSG00000114544|HPRD:11580|Vega:OTTHUMG00000162678 3 3q21.2 solute carrier family 41, member 3 protein-coding SLC41A3 solute carrier family 41, member 3 O SLC41A1-like 2|solute carrier family 41 member 3 20121230 -9606 54947 LPCAT2 - AYTL1|LysoPAFAT HGNC:26032|MIM:612040|Ensembl:ENSG00000087253|HPRD:07913|Vega:OTTHUMG00000133238 16 16q12.2 lysophosphatidylcholine acyltransferase 2 protein-coding LPCAT2 lysophosphatidylcholine acyltransferase 2 O 1-acylglycerophosphocholine O-acyltransferase|1-alkylglycerophosphocholine O-acetyltransferase|LPC acyltransferase 2|LPCAT-2|acetyl-CoA:lyso-PAF acetyltransferase|acetyl-CoA:lyso-platelet-activating factor acetyltransferase|acyl-CoA:lysophosphatidylcholine acyltransferase 2|acyltransferase like 1|acyltransferase-like 1|lyso-PAF acetyltransferase|lyso-platelet-activating factor (PAF) acetyltransferase|lysoPC acyltransferase 2 20121230 -9606 54948 MRPL16 PNAS-111 L16mt|MRP-L16 HGNC:14476|MIM:611829|Ensembl:ENSG00000166902|HPRD:14743|Vega:OTTHUMG00000167410 11 11q12.1 mitochondrial ribosomal protein L16 protein-coding MRPL16 mitochondrial ribosomal protein L16 O 39S ribosomal protein L16, mitochondrial 20121230 -9606 54949 SDHAF2 - C11orf79|PGL2|SDH5 HGNC:26034|MIM:613019|Ensembl:ENSG00000167985|Ensembl:ENSG00000256591|HPRD:07915|Vega:OTTHUMG00000168148|Vega:OTTHUMG00000168279 11 11q12.2 succinate dehydrogenase complex assembly factor 2 protein-coding SDHAF2 succinate dehydrogenase complex assembly factor 2 O SDH assembly factor 2|hSDH5|succinate dehydrogenase assembly factor 2, mitochondrial|succinate dehydrogenase subunit 5, mitochondrial 20121230 -9606 54951 COMMD8 MDS022 - HGNC:26036|Ensembl:ENSG00000169019|HPRD:13086|Vega:OTTHUMG00000099435 4 4p12 COMM domain containing 8 protein-coding COMMD8 COMM domain containing 8 O COMM domain-containing protein 8 20121230 -9606 54952 TRNAU1AP - PRO1902|RP4-669K10.4|SECP43|TRSPAP1 HGNC:30813|Ensembl:ENSG00000180098|HPRD:18035|Vega:OTTHUMG00000003653 1 1p35.3 tRNA selenocysteine 1 associated protein 1 protein-coding TRNAU1AP tRNA selenocysteine 1 associated protein 1 O tRNA selenocysteine 1-associated protein 1|tRNA selenocysteine associated protein (SECP43)|tRNA selenocysteine associated protein 1|tRNA selenocysteine-associated protein 1 20121230 -9606 54953 C1orf27 - ODR4|TTG1|odr-4 HGNC:24299|MIM:609335|Ensembl:ENSG00000157181|HPRD:12723|Vega:OTTHUMG00000035579 1 1q25 chromosome 1 open reading frame 27 protein-coding C1orf27 chromosome 1 open reading frame 27 O LAG1-interacting protein|hODR-4|odorant response abnormal 4|protein odr-4 homolog|transactivated by recombinant transforming growth factor beta|transactivated by transforming growth factor beta protein 1 20121230 -9606 54954 FAM120C RP11-161N3.2 CXorf17|ORF34 HGNC:16949|MIM:300741|Ensembl:ENSG00000184083|HPRD:06480|Vega:OTTHUMG00000021625 X Xp11.22 family with sequence similarity 120C protein-coding FAM120C family with sequence similarity 120C O constitutive coactivator of PPAR-gamma-like protein 2|tumor antigen BJ-HCC-21 20121230 -9606 54955 C1orf109 - - HGNC:26039|MIM:614799|Ensembl:ENSG00000116922|HPRD:07918|Vega:OTTHUMG00000004323 1 1p34.3 chromosome 1 open reading frame 109 protein-coding C1orf109 chromosome 1 open reading frame 109 O uncharacterized protein C1orf109 20121230 -9606 54956 PARP16 - ARTD15|C15orf30|pART15 HGNC:26040|Ensembl:ENSG00000138617|HPRD:07919|Vega:OTTHUMG00000133138 15 15q22.31 poly (ADP-ribose) polymerase family, member 16 protein-coding PARP16 poly (ADP-ribose) polymerase family, member 16 O ADP-ribosyltransferase diphtheria toxin-like 15|PARP-16|mono [ADP-ribose] polymerase PARP16|poly [ADP-ribose] polymerase 16 20121230 -9606 54957 TXNL4B - DLP|Dim2 HGNC:26041|Ensembl:ENSG00000140830|HPRD:11655|Vega:OTTHUMG00000173453 16 16q22.2 thioredoxin-like 4B protein-coding TXNL4B thioredoxin-like 4B O Dim1-like protein|thioredoxin-like protein 4B 20121230 -9606 54958 TMEM160 - - HGNC:26042|Ensembl:ENSG00000130748|HPRD:07920 19 19q13.32 transmembrane protein 160 protein-coding TMEM160 transmembrane protein 160 O - 20121230 -9606 54959 ODAM - APIN HGNC:26043|MIM:614843|Ensembl:ENSG00000109205|HPRD:13376|Vega:OTTHUMG00000129406 4 4q13.3 odontogenic, ameloblast asssociated protein-coding ODAM odontogenic, ameloblast asssociated O odontogenic ameloblast-associated protein 20121230 -9606 54960 GEMIN8 - FAM51A1 HGNC:26044|Ensembl:ENSG00000046647|HPRD:06533|Vega:OTTHUMG00000021160 X Xp22.2 gem (nuclear organelle) associated protein 8 protein-coding GEMIN8 gem (nuclear organelle) associated protein 8 O family with sequence similarity 51, member A1|gem-associated protein 8|gemin-8 20121230 -9606 54961 SSH3 - SSH3L HGNC:30581|MIM:606780|Ensembl:ENSG00000172830|HPRD:09488|Vega:OTTHUMG00000167105 11 11q13.2 slingshot homolog 3 (Drosophila) protein-coding SSH3 slingshot homolog 3 (Drosophila) O SSH-3L|SSH-like protein 3|hSSH-3L|protein phosphatase Slingshot homolog 3|slingshot 3 20121230 -9606 54962 TIPIN - - HGNC:30750|MIM:610716|Ensembl:ENSG00000075131|HPRD:16917|Vega:OTTHUMG00000133188 15 15q22.31 TIMELESS interacting protein protein-coding TIPIN TIMELESS interacting protein O CSM3 homolog|TIMELESS-interacting protein 20121230 -9606 54963 UCKL1 RP4-591C20.1 UCK1-LIKE|UCK1L|URKL1 HGNC:15938|MIM:610866|Ensembl:ENSG00000198276|HPRD:15607|Vega:OTTHUMG00000033003 20 20q13.33 uridine-cytidine kinase 1-like 1 protein-coding UCKL1 uridine-cytidine kinase 1-like 1 O uridine kinase-like 1|uridine-cytidine kinase-like 1 20121230 -9606 54964 C1orf56 UNQ547/PRO1104 MENT|RP11-316M1.9 HGNC:26045|Ensembl:ENSG00000143443|HPRD:08625|Vega:OTTHUMG00000035159 1 1q21.3 chromosome 1 open reading frame 56 protein-coding C1orf56 chromosome 1 open reading frame 56 O methylated in normal thymocytes protein|protein MENT 20121230 -9606 54965 PIGX - - HGNC:26046|MIM:610276|Ensembl:ENSG00000163964|HPRD:07921|Vega:OTTHUMG00000155535 3 3q29 phosphatidylinositol glycan anchor biosynthesis, class X protein-coding PIGX phosphatidylinositol glycan anchor biosynthesis, class X O GPI-mannosyltransferase subunit|PIG-X|phosphatidylinositol-glycan biosynthesis class X protein 20121230 -9606 54967 CXorf48 RP13-565O16.1 BJHCC20A|CT55 HGNC:26047|Ensembl:ENSG00000169551|HPRD:06534|Vega:OTTHUMG00000022473 X Xq26.3 chromosome X open reading frame 48 protein-coding CXorf48 chromosome X open reading frame 48 O BRCA2-interacting protein|cancer/testis antigen 55|tumor antigen BJ-HCC-20|uncharacterized protein CXorf48 20121230 -9606 54968 TMEM70 - MC5DN2 HGNC:26050|MIM:612418|Ensembl:ENSG00000175606|HPRD:07923|Vega:OTTHUMG00000164502 8 8q21.11 transmembrane protein 70 protein-coding TMEM70 transmembrane protein 70 O transmembrane protein 70, mitochondrial 20121230 -9606 54969 C4orf27 - - HGNC:26051|Ensembl:ENSG00000056050|HPRD:07924|Vega:OTTHUMG00000160960 4 4q33 chromosome 4 open reading frame 27 protein-coding C4orf27 chromosome 4 open reading frame 27 O UPF0609 protein C4orf27 20121230 -9606 54970 TTC12 - TPARM HGNC:23700|MIM:610732|Ensembl:ENSG00000149292|HPRD:15577|Vega:OTTHUMG00000142832 11 11q23.2 tetratricopeptide repeat domain 12 protein-coding TTC12 tetratricopeptide repeat domain 12 O TPR repeat protein 12|tetratricopeptide repeat protein 12|tetratricopeptide repeat protein 12 variant 1|tetratricopeptide repeat protein 12 variant 2 20121230 -9606 54971 BANP - BEND1|SMAR1|SMARBP1 HGNC:13450|MIM:611564|Ensembl:ENSG00000172530|HPRD:16538|Vega:OTTHUMG00000137678 16 16q24 BTG3 associated nuclear protein protein-coding BANP BTG3 associated nuclear protein O BEN domain-containing protein 1|protein BANP|scaffold/matrix-associated region-1-binding protein 20121230 -9606 54972 TMEM132A - GBP|HSPA5BP1 HGNC:31092|Ensembl:ENSG00000006118|HPRD:11034|Vega:OTTHUMG00000167803 11 11q12.2 transmembrane protein 132A protein-coding TMEM132A transmembrane protein 132A O GRP78-binding protein|HSPA5-binding protein 1|glucose-regulated protein, 78kDa|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) binding protein 1|heat shock 70kDa protein 5 binding protein 1 20121230 -9606 54973 CPSF3L RP5-890O3.8 CPSF73L|INT11|INTS11|RC-68|RC68 HGNC:26052|MIM:611354|Ensembl:ENSG00000127054|HPRD:13377|Vega:OTTHUMG00000003330 1 1p36.33 cleavage and polyadenylation specific factor 3-like protein-coding CPSF3L cleavage and polyadenylation specific factor 3-like O CPSF3-like protein|cleavage and polyadenylation-specific factor 3-like protein|integrator complex subunit 11|protein related to CPSF subunits of 68 kDa|related to CPSF subunits 68 kDa 20121230 -9606 54974 THG1L - ICF45|IHG-1 HGNC:26053|Ensembl:ENSG00000113272|HPRD:13726|Vega:OTTHUMG00000130254 5 5q33.3 tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) protein-coding THG1L tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) O induced by high glucose-1|interphase cytoplasmic foci protein 45|probable tRNA(His) guanylyltransferase 20121230 -9606 54976 C20orf27 RP5-1009E24.6 - HGNC:15873|Ensembl:ENSG00000101220|HPRD:16648|Vega:OTTHUMG00000031753 20 20p13 chromosome 20 open reading frame 27 protein-coding C20orf27 chromosome 20 open reading frame 27 O UPF0687 protein C20orf27 20121230 -9606 54977 SLC25A38 - - HGNC:26054|MIM:610819|Ensembl:ENSG00000144659|HPRD:07925|Vega:OTTHUMG00000131289 3 3p22.1 solute carrier family 25, member 38 protein-coding SLC25A38 solute carrier family 25, member 38 O solute carrier family 25 member 38 20121230 -9606 54978 SLC35F6 UNQ3047/PRO9863 ANT2BP|C2orf18|TANGO9 HGNC:26055|Ensembl:ENSG00000213699|HPRD:12808|Vega:OTTHUMG00000128407 2 2p23.3 solute carrier family 35, member F6 protein-coding SLC35F6 solute carrier family 35, member F6 O ANT2-binding protein|transmembrane protein C2orf18|transport and golgi organization 9 homolog 20121230 -9606 54979 HRASLS2 - PLA1/2-2 HGNC:17824|MIM:613866|Ensembl:ENSG00000133328|HPRD:13670|Vega:OTTHUMG00000167851 11 11q12.3 HRAS-like suppressor 2 protein-coding HRASLS2 HRAS-like suppressor 2 O - 20121230 -9606 54980 C2orf42 - - HGNC:26056|Ensembl:ENSG00000115998|HPRD:07927|Vega:OTTHUMG00000129642 2 2p13.3 chromosome 2 open reading frame 42 protein-coding C2orf42 chromosome 2 open reading frame 42 O uncharacterized protein C2orf42 20121230 -9606 54981 NMRK1 RP11-235O14.2 C9orf95|NRK1|bA235O14.2 HGNC:26057|MIM:608704|Ensembl:ENSG00000106733|HPRD:09868|Vega:OTTHUMG00000020034 9 9q21.13 nicotinamide riboside kinase 1 protein-coding NMRK1 nicotinamide riboside kinase 1 O NRK 1|RNK 1|nicotinic acid riboside kinase 1|nmR-K 1|ribosylnicotinamide kinase 1|ribosylnicotinic acid kinase 1 20121230 -9606 54982 CLN6 - CLN4A|HsT18960|nclf HGNC:2077|MIM:606725|Ensembl:ENSG00000128973|HPRD:05991|Vega:OTTHUMG00000133286 15 15q23 ceroid-lipofuscinosis, neuronal 6, late infantile, variant protein-coding CLN6 ceroid-lipofuscinosis, neuronal 6, late infantile, variant O ceroid-lipofuscinosis neuronal protein 6 20121230 -9606 54984 PINX1 - LPTL|LPTS HGNC:30046|MIM:606505|Ensembl:ENSG00000171056|Ensembl:ENSG00000254093|Ensembl:ENSG00000258724|HPRD:05934|Vega:OTTHUMG00000163808|Vega:OTTHUMG00000171787 8 8p23 PIN2/TERF1 interacting, telomerase inhibitor 1 protein-coding PINX1 PIN2/TERF1 interacting, telomerase inhibitor 1 O 67-11-3 protein|PIN2 interacting protein 1|PIN2-interacting protein 1|PIN2/TERF1-interacting telomerase inhibitor 1|TRF1-interacting protein 1|hepatocellular carcinoma-related putative tumor suppressor|liver-related putative tumor suppressor|pin2-interacting protein X1|protein 67-11-3 20121230 -9606 54985 HCFC1R1 - HPIP HGNC:21198|Ensembl:ENSG00000103145|HPRD:13636|Vega:OTTHUMG00000177450 16 16p13.3 host cell factor C1 regulator 1 (XPO1 dependent) protein-coding HCFC1R1 host cell factor C1 regulator 1 (XPO1 dependent) O HCF-1 beta-propeller interacting protein|HCF-1 beta-propeller-interacting protein|host cell factor C1 regulator 1|host cell factor C1 regulator 1 (XPO1 dependant) 20121230 -9606 54986 ULK4 hCG_1996673 FAM7C1|REC01035 HGNC:15784|Ensembl:ENSG00000168038|HPRD:07928|Vega:OTTHUMG00000156210 3 3p22.1 unc-51-like kinase 4 (C. elegans) protein-coding ULK4 unc-51-like kinase 4 (C. elegans) O serine/threonine-protein kinase ULK4 20121230 -9606 54987 C1orf123 RP5-1024G6.3 - HGNC:26059|Ensembl:ENSG00000162384|HPRD:07929|Vega:OTTHUMG00000008940 1 1p32.3 chromosome 1 open reading frame 123 protein-coding C1orf123 chromosome 1 open reading frame 123 O UPF0587 protein C1orf123 20121230 -9606 54988 ACSM5 - - HGNC:26060|MIM:614361|Ensembl:ENSG00000183549|HPRD:08627|Vega:OTTHUMG00000131551 16 16p12.3 acyl-CoA synthetase medium-chain family member 5 protein-coding ACSM5 acyl-CoA synthetase medium-chain family member 5 O acyl-coenzyme A synthetase ACSM5, mitochondrial 20121230 -9606 54989 ZNF770 - PRO1914 HGNC:26061|Ensembl:ENSG00000198146|HPRD:16918|Vega:OTTHUMG00000129689 15 15q14 zinc finger protein 770 protein-coding ZNF770 zinc finger protein 770 O - 20121230 -9606 54991 C1orf159 RP11-465B22.4 - HGNC:26062|Ensembl:ENSG00000131591|HPRD:07930|Vega:OTTHUMG00000000745 1 1p36.33 chromosome 1 open reading frame 159 protein-coding C1orf159 chromosome 1 open reading frame 159 O uncharacterized protein C1orf159 20121230 -9606 54993 ZSCAN2 - ZFP29|ZNF854 HGNC:20994|Ensembl:ENSG00000176371|HPRD:15898|Vega:OTTHUMG00000074027 15 15q25.2 zinc finger and SCAN domain containing 2 protein-coding ZSCAN2 zinc finger and SCAN domain containing 2 O zfp-29|zinc finger and SCAN domain-containing protein 2|zinc finger protein 29 homolog|zinc finger protein 854 20121230 -9606 54994 GID8 - C20orf11|TWA1 HGNC:15857|MIM:611625|Ensembl:ENSG00000101193|HPRD:12738|Vega:OTTHUMG00000032949 20 20q13.33 GID complex subunit 8 homolog (S. cerevisiae) protein-coding GID8 GID complex subunit 8 homolog (S. cerevisiae) O glucose-induced degradation protein 8 homolog|protein C20orf11|two hybrid-associated protein 1 with RanBPM 20121230 -9606 54995 OXSM - FASN2D|KASI|KS HGNC:26063|MIM:610324|Ensembl:ENSG00000151093|HPRD:07931|Vega:OTTHUMG00000130477 3 3p24.2 3-oxoacyl-ACP synthase, mitochondrial protein-coding OXSM 3-oxoacyl-ACP synthase, mitochondrial O 3-ketoacyl-acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial|3-oxoacyl-acyl-carrier-protein synthase|acyl-malonyl acyl carrier protein-condensing enzyme|beta-ketoacyl synthase|beta-ketoacyl-ACP synthase|type II mitochondrial beta-ketoacyl synthase 20121230 -9606 54996 MARC2 - MOSC2|RP11-270A6.1 HGNC:26064|MIM:614127|Ensembl:ENSG00000117791|HPRD:08628|Vega:OTTHUMG00000037354 1 1q41 mitochondrial amidoxime reducing component 2 protein-coding MARC2 mitochondrial amidoxime reducing component 2 O MOCO sulphurase C-terminal domain containing 2|MOSC domain-containing protein 2, mitochondrial|moco sulfurase C-terminal domain-containing protein 2|molybdenum cofactor sulfurase C-terminal domain-containing protein 2 20121230 -9606 54997 TESC - CHP3|TSC HGNC:26065|MIM:611585|Ensembl:ENSG00000088992|HPRD:11649|Vega:OTTHUMG00000144168 12 12q24.22 tescalcin protein-coding TESC tescalcin O calcineurin B homologous protein 3|calcineurin-like EF hand protein 3 20121230 -9606 54998 AURKAIP1 - AIP|AKIP HGNC:24114|MIM:609183|Ensembl:ENSG00000175756|HPRD:16457|Vega:OTTHUMG00000001413 1 1p36.33 aurora kinase A interacting protein 1 protein-coding AURKAIP1 aurora kinase A interacting protein 1 O AURKA-interacting protein|aurora kinase A-interacting protein|aurora-A kinase interacting protein 20121230 -9606 55000 TUG1 - LINC00080|NCRNA00080|TI-227H HGNC:26066|MIM:614971|HPRD:08629 22 22q12.2 taurine upregulated 1 (non-protein coding) miscRNA TUG1 taurine upregulated 1 (non-protein coding) O - 20121230 -9606 55001 TTC22 RP5-1043G4.4 - HGNC:26067|Ensembl:ENSG00000006555|HPRD:07932|Vega:OTTHUMG00000009916 1 1p32.3 tetratricopeptide repeat domain 22 protein-coding TTC22 tetratricopeptide repeat domain 22 O TPR repeat protein 22|tetratricopeptide repeat protein 22 20121230 -9606 55002 TMCO3 RP11-230F18.3 C13orf11 HGNC:20329|Ensembl:ENSG00000150403|HPRD:12612|Vega:OTTHUMG00000017389 13 13q34 transmembrane and coiled-coil domains 3 protein-coding TMCO3 transmembrane and coiled-coil domains 3 O B230339H12Rik|putative LAG1-interacting protein|transmembrane and coiled-coil domain-containing protein 3 20121230 -9606 55003 PAK1IP1 - MAK11|PIP1|RP11-421M1.5|WDR84|bA421M1.5|hPIP1 HGNC:20882|MIM:607811|Ensembl:ENSG00000111845|HPRD:07424|Vega:OTTHUMG00000014245 6 6p24.2 PAK1 interacting protein 1 protein-coding PAK1IP1 PAK1 interacting protein 1 O PAK/PLC-interacting protein 1|PAK1-interacting protein 1|WD repeat-containing protein 84|p21-activated protein kinase-interacting protein 1 20121230 -9606 55004 LAMTOR1 PP7157 C11orf59|PDRO|Ragulator1|p18|p27RF-Rho HGNC:26068|MIM:613510|Ensembl:ENSG00000149357|HPRD:07933|Vega:OTTHUMG00000167869 11 11q13.4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 O RhoA activator C11orf59|late endosomal/lysosomal adaptor and MAPK and MTOR activator 1|lipid raft adaptor protein p18|p27Kip1-releasing factor from RhoA|p27kip1 releasing factor from RhoA|protein associated with DRMs and endosomes|ragulator complex protein LAMTOR1|ragulator complex protein PDRO 20121230 -9606 55005 RMND1 RP11-351K16.6 C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3 HGNC:21176|MIM:614917|Ensembl:ENSG00000155906|HPRD:09858|Vega:OTTHUMG00000015837 6 6q25.1 required for meiotic nuclear division 1 homolog (S. cerevisiae) protein-coding RMND1 required for meiotic nuclear division 1 homolog (S. cerevisiae) O required for meiotic nuclear division protein 1 homolog 20121230 -9606 55006 TRMT61B - - HGNC:26070|Ensembl:ENSG00000171103|HPRD:07935|Vega:OTTHUMG00000128433 2 2p23.2 tRNA methyltransferase 61 homolog B (S. cerevisiae) protein-coding TRMT61B tRNA methyltransferase 61 homolog B (S. cerevisiae) O potential tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61B|potential tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61B 20121230 -9606 55007 FAM118A CTA-268H5.11-003 C22orf8 HGNC:1313|Ensembl:ENSG00000100376|HPRD:07936|Vega:OTTHUMG00000151338 22 22q13 family with sequence similarity 118, member A protein-coding FAM118A family with sequence similarity 118, member A O bK268H5.C22.4|protein FAM118A 20121230 -9606 55008 HERC6 - - HGNC:26072|MIM:609249|Ensembl:ENSG00000138642|HPRD:13647|Vega:OTTHUMG00000160983 4 4q22.1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 O HECT domain and RCC1-like domain-containing protein 6|hect domain and RLD 6|potential ubiquitin ligase|probable E3 ubiquitin-protein ligase HERC6 20121230 -9606 55009 C19orf24 - - HGNC:26073|Ensembl:ENSG00000228300|HPRD:12702|Vega:OTTHUMG00000153928 19 19p13.3 chromosome 19 open reading frame 24 protein-coding C19orf24 chromosome 19 open reading frame 24 O uncharacterized membrane protein C19orf24 20121230 -9606 55010 PARPBP - AROM|C12orf48|PARI HGNC:26074|MIM:613687|Ensembl:ENSG00000185480|HPRD:07937|Vega:OTTHUMG00000167923 12 12q23.2 PARP1 binding protein protein-coding PARPBP PARP1 binding protein O PARP-1 binding protein|PARP1-binding protein|PCNA-interacting partner 20121230 -9606 55011 PIH1D1 - NOP17 HGNC:26075|MIM:611480|Ensembl:ENSG00000104872|HPRD:07938 19 19q13.33 PIH1 domain containing 1 protein-coding PIH1D1 PIH1 domain containing 1 O PIH1 domain-containing protein 1|nucleolar protein 17 homolog 20121230 -9606 55012 PPP2R3C - C14orf10|G4-1|G5pr HGNC:17485|Ensembl:ENSG00000092020|HPRD:12622|Vega:OTTHUMG00000140224 14 14q13.2 protein phosphatase 2, regulatory subunit B'', gamma protein-coding PPP2R3C protein phosphatase 2, regulatory subunit B'', gamma O protein phosphatase 2 (formerly 2A), regulatory subunit B'', gamma|protein phosphatase subunit G5PR|rhabdomyosarcoma antigen MU-RMS-40.6A|rhabdomyosarcoma antigen MU-RMS-40.6A/6C|rhabdomyosarcoma antigen Mu-RMS-40.6C|serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma 20121230 -9606 55013 CCDC109B - - HGNC:26076|Ensembl:ENSG00000005059|HPRD:07939|Vega:OTTHUMG00000161103 4 4q25 coiled-coil domain containing 109B protein-coding CCDC109B coiled-coil domain containing 109B O coiled-coil domain-containing protein 109B 20121230 -9606 55014 STX17 - - HGNC:11432|MIM:604204|Ensembl:ENSG00000136874|HPRD:05013|Vega:OTTHUMG00000020359 9 9q31.1 syntaxin 17 protein-coding STX17 syntaxin 17 O syntaxin-17 20121230 -9606 55015 PRPF39 - - HGNC:20314|MIM:614907|Ensembl:ENSG00000185246|HPRD:17913|Vega:OTTHUMG00000140265 14 14q21.2 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) protein-coding PRPF39 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) O PRP39 homolog|pre-mRNA-processing factor 39 20121230 -9606 55016 MARCH1 - MARCH-I|RNF171 HGNC:26077|MIM:613331|Ensembl:ENSG00000145416|HPRD:07940|Vega:OTTHUMG00000161204 4 4q32.2 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase protein-coding MARCH1 membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MARCH1|RING finger protein 171|membrane-associated RING finger protein 1|membrane-associated RING-CH protein I 20121230 -9606 55017 C14orf119 My028 - HGNC:20270|Ensembl:ENSG00000179933|HPRD:16595|Vega:OTTHUMG00000028717 14 14q11.2 chromosome 14 open reading frame 119 protein-coding C14orf119 chromosome 14 open reading frame 119 O My028 protein|uncharacterized protein C14orf119 20121230 -9606 55018 LINC00483 - C17orf73 HGNC:26080|HPRD:07942 17 17q21.33 long intergenic non-protein coding RNA 483 miscRNA LINC00483 long intergenic non-protein coding RNA 483 O - 20121230 -9606 55020 TTC38 LL22NC03-5H6.5 - HGNC:26082|Ensembl:ENSG00000075234|HPRD:07943|Vega:OTTHUMG00000150494 22 22q13 tetratricopeptide repeat domain 38 protein-coding TTC38 tetratricopeptide repeat domain 38 O TPR repeat protein 38|tetratricopeptide repeat protein 38 20121230 -9606 55022 PID1 HMFN2073 NYGGF4|P-CLI1|PCLI1 HGNC:26084|MIM:612930|Ensembl:ENSG00000153823|HPRD:07944|Vega:OTTHUMG00000133191 2 2q36.3 phosphotyrosine interaction domain containing 1 protein-coding PID1 phosphotyrosine interaction domain containing 1 O PTB-containing, cubilin and LRP1-interacting protein|phosphotyrosine interaction domain-containing protein 1 20121230 -9606 55023 PHIP RP11-173D14.2 BRWD2|DCAF14|WDR11|ndrp HGNC:15673|MIM:612870|Ensembl:ENSG00000146247|HPRD:10152|Vega:OTTHUMG00000015071 6 6q14 pleckstrin homology domain interacting protein protein-coding PHIP pleckstrin homology domain interacting protein O DDB1 and CUL4 associated factor 14|IRS-1 PH domain-binding protein|PH-interacting protein|WD repeat-containing protein 11 20121230 -9606 55024 BANK1 - BANK HGNC:18233|MIM:610292|Ensembl:ENSG00000153064|HPRD:09819|Vega:OTTHUMG00000160958 4 4q24 B-cell scaffold protein with ankyrin repeats 1 protein-coding BANK1 B-cell scaffold protein with ankyrin repeats 1 O B-cell scaffold protein with ankyrin repeats 20121230 -9606 55025 FLJ20712 - - - 7 7p14.3 uncharacterized FLJ20712 unknown - - - - 20121230 -9606 55026 TMEM255A RP3-525N14.6 FAM70A HGNC:26086|Ensembl:ENSG00000125355|HPRD:06535|Vega:OTTHUMG00000022298 X Xq24 transmembrane protein 255A protein-coding TMEM255A transmembrane protein 255A O family with sequence similarity 70, member A|protein FAM70A 20121230 -9606 55027 HEATR3 - SYO1 HGNC:26087|MIM:614951|Ensembl:ENSG00000155393|HPRD:07945|Vega:OTTHUMG00000133174 16 16q12.1 HEAT repeat containing 3 protein-coding HEATR3 HEAT repeat containing 3 O HEAT repeat-containing protein 3 20121230 -9606 55028 C17orf80 HLC8 HLC-8|MIG3|SPEP1 HGNC:29601|Ensembl:ENSG00000141219|HPRD:17108|Vega:OTTHUMG00000178417 17 17q25.1 chromosome 17 open reading frame 80 protein-coding C17orf80 chromosome 17 open reading frame 80 O cell migration-inducing gene 3 protein|human lung cancer oncogene 8 protein|lung cancer-related protein 8|migration-inducing protein 3|sperm-expressed protein 1|uncharacterized protein C17orf80 20121230 -9606 55030 FBXO34 CGI-301 Fbx34 HGNC:20201|MIM:609104|Ensembl:ENSG00000178974|HPRD:16442|Vega:OTTHUMG00000171033 14 14q22.3 F-box protein 34 protein-coding FBXO34 F-box protein 34 O F-box only protein 34|protein CGI-301 20121230 -9606 55031 USP47 - TRFP HGNC:20076|MIM:614460|Ensembl:ENSG00000170242|Vega:OTTHUMG00000165685 11 11p15.3 ubiquitin specific peptidase 47 protein-coding USP47 ubiquitin specific peptidase 47 O Trf (TATA binding protein-related factor)-proximal homolog|deubiquitinating enzyme 47|ubiquitin carboxyl-terminal hydrolase 47|ubiquitin specific protease 47|ubiquitin thioesterase 47|ubiquitin thiolesterase 47|ubiquitin-specific-processing protease 47 20121230 -9606 55032 SLC35A5 UNQ164/PRO190 - HGNC:20792|Ensembl:ENSG00000138459|HPRD:11575|Vega:OTTHUMG00000159263 3 3q13.2 solute carrier family 35, member A5 protein-coding SLC35A5 solute carrier family 35, member A5 O probable UDP-sugar transporter protein SLC35A5 20121230 -9606 55033 FKBP14 UNQ322/PRO381 EDSKMH|FKBP22|IPBP12 HGNC:18625|MIM:614505|Ensembl:ENSG00000106080|HPRD:16898|Vega:OTTHUMG00000023442 7 7p14.3 FK506 binding protein 14, 22 kDa protein-coding FKBP14 FK506 binding protein 14, 22 kDa O 22 kDa FK506-binding protein|22 kDa FKBP|FK506-binding protein 14|FKBP-22|PPIase FKBP14|peptidyl-prolyl cis-trans isomerase FKBP14|rotamase 20121230 -9606 55034 MOCOS - HMCS|MCS|MOS HGNC:18234|MIM:613274|Ensembl:ENSG00000075643|HPRD:17585|Vega:OTTHUMG00000132590 18 18q12 molybdenum cofactor sulfurase protein-coding MOCOS molybdenum cofactor sulfurase O moCo sulfurase 20121230 -9606 55035 NOL8 RP11-62C3.9 C9orf34|NOP132|bA62C3.3|bA62C3.4 HGNC:23387|MIM:611534|Ensembl:ENSG00000198000|HPRD:11397|Vega:OTTHUMG00000020221 9 9q22.31 nucleolar protein 8 protein-coding NOL8 nucleolar protein 8 O nucleolar protein Nop132 20121230 -9606 55036 CCDC40 - CILD15 HGNC:26090|MIM:613799|Ensembl:ENSG00000141519|Vega:OTTHUMG00000132707 17 17q25.3 coiled-coil domain containing 40 protein-coding CCDC40 coiled-coil domain containing 40 O coiled-coil domain-containing protein 40 20121230 -9606 55037 PTCD3 TRG15 - HGNC:24717|MIM:614918|Ensembl:ENSG00000132300|HPRD:08631|Vega:OTTHUMG00000153168 2 2p11.2 pentatricopeptide repeat domain 3 protein-coding PTCD3 pentatricopeptide repeat domain 3 O TRG-15|pentatricopeptide repeat-containing protein 3, mitochondrial|transformation-related gene 15 protein 20121230 -9606 55038 CDCA4 - HEPP|SEI-3/HEPP HGNC:14625|MIM:612270|Ensembl:ENSG00000170779|HPRD:13015|Vega:OTTHUMG00000170767 14 14q32.33 cell division cycle associated 4 protein-coding CDCA4 cell division cycle associated 4 O cell division cycle-associated protein 4|hematopoietic progenitor protein 20121230 -9606 55039 TRMT12 - TRM12|TYW2 HGNC:26091|MIM:611244|Ensembl:ENSG00000183665|HPRD:07947|Vega:OTTHUMG00000165022 8 8q24.13 tRNA methyltransferase 12 homolog (S. cerevisiae) protein-coding TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) O alpha-amino-alpha-carboxypropyl transferase TYW2|homolog of yeast tRNA methyltransferase|tRNA methyltranferase 12 homolog|tRNA wybutosine-synthesizing protein 2 homolog|tRNA-yW synthesizing protein 2|tRNA-yW-synthesizing protein 2 20121230 -9606 55040 EPN3 - - HGNC:18235|MIM:607264|Ensembl:ENSG00000049283|HPRD:06272|Vega:OTTHUMG00000162155 17 17q21.33 epsin 3 protein-coding EPN3 epsin 3 O EPS-15-interacting protein 3|epsin-3 20121230 -9606 55041 PLEKHB2 - EVT2 HGNC:19236|Ensembl:ENSG00000115762|HPRD:15144|Vega:OTTHUMG00000131656 2 2q21.1 pleckstrin homology domain containing, family B (evectins) member 2 protein-coding PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 O PH domain-containing family B member 2|evectin-2|pleckstrin homology domain-containing family B member 2 20121230 -9606 55048 VPS37C - - HGNC:26097|MIM:610038|Ensembl:ENSG00000167987|HPRD:15652|Vega:OTTHUMG00000167826 11 11q12.2 vacuolar protein sorting 37 homolog C (S. cerevisiae) protein-coding VPS37C vacuolar protein sorting 37 homolog C (S. cerevisiae) O ESCRT-I complex subunit VPS37C|hVps37C|vacuolar protein sorting 37C|vacuolar protein sorting-associated protein 37C 20121230 -9606 55049 C19orf60 - - HGNC:26098|Ensembl:ENSG00000006015|HPRD:07948 19 19p13.11 chromosome 19 open reading frame 60 protein-coding C19orf60 chromosome 19 open reading frame 60 O uncharacterized protein C19orf60 20121230 -9606 55051 NRDE2 - C14orf102 HGNC:20186|Ensembl:ENSG00000119720|HPRD:12625|Vega:OTTHUMG00000171020 14 14q32.11 NRDE-2, necessary for RNA interference, domain containing protein-coding NRDE2 NRDE-2, necessary for RNA interference, domain containing O UPF0614 protein C14orf102 20121230 -9606 55052 MRPL20 hCG_20417 L20mt|MRP-L20 HGNC:14478|MIM:611833|Ensembl:ENSG00000242485|HPRD:14746|Vega:OTTHUMG00000002916 1 1p36.3-p36.2 mitochondrial ribosomal protein L20 protein-coding MRPL20 mitochondrial ribosomal protein L20 O 39S ribosomal protein L20, mitochondrial 20121230 -9606 55054 ATG16L1 hCG_1817841 APG16L|ATG16A|ATG16L|IBD10|WDR30 HGNC:21498|MIM:610767|Ensembl:ENSG00000085978|HPRD:16498|Vega:OTTHUMG00000133619 2 2q37.1 autophagy related 16-like 1 (S. cerevisiae) protein-coding ATG16L1 autophagy related 16-like 1 (S. cerevisiae) O APG16L beta|ATG16 autophagy related 16-like 1|WD repeat domain 30|autophagy-related protein 16-1 20121230 -9606 55055 ZWILCH - KNTC1AP|hZwilch HGNC:25468|MIM:609984|Ensembl:ENSG00000174442|HPRD:07640|Vega:OTTHUMG00000133194 15 15q22.31 zwilch kinetochore protein protein-coding ZWILCH zwilch kinetochore protein O Zwilch, kinetochore associated, homolog|homolog of Drosophila Zwilch|protein zwilch homolog 20121230 -9606 55056 FLJ10038 - - - 15 15q21.2 uncharacterized protein FLJ10038 miscRNA - - - - 20121230 -9606 55057 AIM1L RP11-569G9.5 CRYBG2 HGNC:17295|Ensembl:ENSG00000176092|HPRD:09794|Vega:OTTHUMG00000003490 1 1p36.11 absent in melanoma 1-like protein-coding AIM1L absent in melanoma 1-like O absent in melanoma 1-like protein|beta-gamma crystallin domain containing 2|beta/gamma crystallin domain-containing protein 2 20121230 -9606 55061 SUSD4 RP11-239E10.4 PRO222 HGNC:25470|Ensembl:ENSG00000143502|HPRD:07641|Vega:OTTHUMG00000037936 1 1q41 sushi domain containing 4 protein-coding SUSD4 sushi domain containing 4 O YHGM196|sushi domain-containing protein 4 20121230 -9606 55062 WIPI1 - ATG18|ATG18A|WIPI49 HGNC:25471|MIM:609224|Ensembl:ENSG00000070540|HPRD:08540|Vega:OTTHUMG00000179873 17 17q24.2 WD repeat domain, phosphoinositide interacting 1 protein-coding WIPI1 WD repeat domain, phosphoinositide interacting 1 O WD repeat domain phosphoinositide-interacting protein 1|WD40 repeat protein Interacting with phosphoInositides of 49kDa|WD40 repeat protein interacting with phosphoinositides of 49 kDa|WIPI 49 kDa|WIPI-1 alpha|atg18 protein homolog 20121230 -9606 55063 ZCWPW1 - ZCW1 HGNC:23486|Ensembl:ENSG00000078487|HPRD:15706|Vega:OTTHUMG00000159537 7 7q22.1 zinc finger, CW type with PWWP domain 1 protein-coding ZCWPW1 zinc finger, CW type with PWWP domain 1 O zinc finger CW-type PWWP domain protein 1|zinc finger, CW-type with PWWP domain 1 20121230 -9606 55064 SPATA6L RP11-280I16.2 C9orf68|bA6J24.2 HGNC:25472|Ensembl:ENSG00000106686|HPRD:12973|Vega:OTTHUMG00000019469 9 9p24.2 spermatogenesis associated 6-like protein-coding SPATA6L spermatogenesis associated 6-like O spermatogenesis associated 6-like protein 20121230 -9606 55065 SLC52A1 - GPCR42|GPR172B|PAR2|RFT1|RFVT1|hRFT1 HGNC:30225|MIM:607883|Ensembl:ENSG00000132517|HPRD:07432|Vega:OTTHUMG00000099448 17 17p13.2 solute carrier family 52, riboflavin transporter, member 1 protein-coding SLC52A1 solute carrier family 52, riboflavin transporter, member 1 O G protein-coupled receptor 172B|G-protein coupled receptor GPCR42|PERV-A receptor 2|porcine endogenous retrovirus A receptor 2|riboflavin transporter 1 20121230 -9606 55066 PDPR - PDP3 HGNC:30264|Ensembl:ENSG00000090857|HPRD:17832|Vega:OTTHUMG00000176963 16 16q22.1 pyruvate dehydrogenase phosphatase regulatory subunit protein-coding PDPR pyruvate dehydrogenase phosphatase regulatory subunit O pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial 20121230 -9606 55068 ENOX1 RP11-301I17.1 CNOX|PIG38|bA64J21.1|cCNOX HGNC:25474|MIM:610914|Ensembl:ENSG00000120658|HPRD:07644|Vega:OTTHUMG00000016818 13 13q14.11 ecto-NOX disulfide-thiol exchanger 1 protein-coding ENOX1 ecto-NOX disulfide-thiol exchanger 1 O candidate growth-related and time keeping constitutive hydroquinone (NADH) oxidase|candidate growth-related and time keeping constitutive hydroquinone [NADH] oxidase|cell proliferation-inducing gene 38 protein|constitutive Ecto-NOX 20121230 -9606 55069 TMEM248 - C7orf42 HGNC:25476|Ensembl:ENSG00000106609|HPRD:08541|Vega:OTTHUMG00000129553 7 7q11.21 transmembrane protein 248 protein-coding TMEM248 transmembrane protein 248 O UPF0458 protein C7orf42 20121230 -9606 55070 DET1 - - HGNC:25477|MIM:608727|Ensembl:ENSG00000140543|HPRD:13140|Vega:OTTHUMG00000171851 15 15q25.3 de-etiolated homolog 1 (Arabidopsis) protein-coding DET1 de-etiolated homolog 1 (Arabidopsis) O DET1 homolog|de-etiolated 1|de-etiolated-1 homolog 20121230 -9606 55071 C9orf40 - - HGNC:23433|Ensembl:ENSG00000135045|HPRD:12957|Vega:OTTHUMG00000020031 9 9q21.13 chromosome 9 open reading frame 40 protein-coding C9orf40 chromosome 9 open reading frame 40 O uncharacterized protein C9orf40 20121230 -9606 55072 RNF31 - HOIP|ZIBRA HGNC:16031|MIM:612487|Ensembl:ENSG00000092098|HPRD:11516|Vega:OTTHUMG00000028798 14 14q11.2 ring finger protein 31 protein-coding RNF31 ring finger protein 31 O E3 ubiquitin-protein ligase RNF31|HOIL-1-interacting protein|zinc in-between-RING-finger ubiquitin-associated domain protein 20121230 -9606 55073 LRRC37A4P - LRRC37A4 HGNC:25479|HPRD:07646 17 17q21.31 leucine rich repeat containing 37, member A4, pseudogene pseudo LRRC37A4P leucine rich repeat containing 37, member A4, pseudogene O - 20121230 -9606 55074 OXR1 Nbla00307 - HGNC:15822|MIM:605609|Ensembl:ENSG00000164830|HPRD:16126|Vega:OTTHUMG00000167682 8 8q23 oxidation resistance 1 protein-coding OXR1 oxidation resistance 1 O oxidation resistance protein 1|putative protein product of Nbla00307 20121230 -9606 55075 UACA - NUCLING HGNC:15947|MIM:612516|Ensembl:ENSG00000137831|HPRD:11657|Vega:OTTHUMG00000133363 15 15q22-q24 uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding UACA uveal autoantigen with coiled-coil domains and ankyrin repeats O nuclear membrane binding protein|uveal autoantigen with coiled coil domains and ankyrin repeats 20121230 -9606 55076 TMEM45A - DERP7 HGNC:25480|Ensembl:ENSG00000181458|HPRD:07647|Vega:OTTHUMG00000150327 3 3q12.2 transmembrane protein 45A protein-coding TMEM45A transmembrane protein 45A O DNA polymerase-transactivated protein 4|dermal papilla derived protein 7|dermal papilla-derived protein 7 20121230 -9606 55079 FEZF2 FKSG36 FEZ|FEZL|TOF|ZFP312|ZNF312 HGNC:13506|MIM:607414|Ensembl:ENSG00000153266|HPRD:07596|Vega:OTTHUMG00000158705 3 3p14.2 FEZ family zinc finger 2 protein-coding FEZF2 FEZ family zinc finger 2 O fez family zinc finger protein 2|forebrain embryonic zinc finger-like protein 2|zinc finger protein 312 20121230 -9606 55080 TAPBPL - TAPBP-R|TAPBPR HGNC:30683|MIM:607081|Ensembl:ENSG00000139192|HPRD:06153|Vega:OTTHUMG00000168317 12 12p13.31 TAP binding protein-like protein-coding TAPBPL TAP binding protein-like O TAP binding protein related|TAP-binding protein-like|TAP-binding protein-related protein|TAPASIN-R|tapasin-like|tapasin-related protein 20121230 -9606 55081 IFT57 - ESRRBL1|HIPPI|MHS4R2 HGNC:17367|MIM:606621|Ensembl:ENSG00000114446|HPRD:09430|Vega:OTTHUMG00000159223 3 3q13.13 intraflagellar transport 57 homolog (Chlamydomonas) protein-coding IFT57 intraflagellar transport 57 homolog (Chlamydomonas) O HIP1 protein interactor|HIP1-interacting protein|dermal papilla-derived protein 8|estrogen-related receptor beta like 1|estrogen-related receptor beta-like protein 1|huntingtin interacting protein-1 interacting protein|intraflagellar transport protein 57 homolog 20121230 -9606 55082 ARGLU1 RP11-297I6.1 - HGNC:25482|MIM:614046|Ensembl:ENSG00000134884|HPRD:07648|Vega:OTTHUMG00000017321 13 13q33.3 arginine and glutamate rich 1 protein-coding ARGLU1 arginine and glutamate rich 1 O arginine and glutamate-rich protein 1 20121230 -9606 55083 KIF26B hCG_21329 - HGNC:25484|MIM:614026|Ensembl:ENSG00000162849|Vega:OTTHUMG00000040079 1 1q44 kinesin family member 26B protein-coding KIF26B kinesin family member 26B O kinesin-like protein KIF26B 20121230 -9606 55084 SOBP RP1-47M23.2 JXC1|MRAMS HGNC:29256|MIM:613667|Ensembl:ENSG00000112320|HPRD:07650|Vega:OTTHUMG00000015312 6 6q21 sine oculis binding protein homolog (Drosophila) protein-coding SOBP sine oculis binding protein homolog (Drosophila) O jackson circler protein 1|sine oculis-binding protein homolog 20121230 -9606 55086 CXorf57 RP11-647M7.1 - HGNC:25486|Ensembl:ENSG00000147231|HPRD:06513|Vega:OTTHUMG00000022150 X Xq22.3 chromosome X open reading frame 57 protein-coding CXorf57 chromosome X open reading frame 57 O uncharacterized protein CXorf57 20121230 -9606 55088 C10orf118 - - HGNC:24349|Ensembl:ENSG00000165813|HPRD:16576|Vega:OTTHUMG00000019081 10 10q25.3 chromosome 10 open reading frame 118 protein-coding C10orf118 chromosome 10 open reading frame 118 O CTCL tumor antigen HD-CL-01/L14-2|CTCL tumor antigen L14-2|uncharacterized protein C10orf118 20121230 -9606 55089 SLC38A4 - ATA3|NAT3|PAAT HGNC:14679|MIM:608065|Ensembl:ENSG00000139209|HPRD:12159|Vega:OTTHUMG00000169518 12 12q13 solute carrier family 38, member 4 protein-coding SLC38A4 solute carrier family 38, member 4 O N amino acid transporter 3|Na(+)-coupled neutral amino acid transporter 4|amino acid transporter A3|amino acid transporter system A3|sodium-coupled neutral amino acid transporter 4|system A amino acid transporter 3|system N amino acid transporter 3 20121230 -9606 55090 MED9 - MED25 HGNC:25487|MIM:609878|Ensembl:ENSG00000141026|HPRD:14383|Vega:OTTHUMG00000059293 17 17p11.2 mediator complex subunit 9 protein-coding MED9 mediator complex subunit 9 O mediator of RNA polymerase II transcription subunit 9|mediator of RNA polymerase II transcription, subunit 9 homolog|mediator subunit 25 20121230 -9606 55092 TMEM51 - C1orf72 HGNC:25488|Ensembl:ENSG00000171729|HPRD:07651|Vega:OTTHUMG00000002046 1 1p36.21 transmembrane protein 51 protein-coding TMEM51 transmembrane protein 51 O - 20121230 -9606 55093 WDYHV1 - C8orf32 HGNC:25490|Ensembl:ENSG00000156795|HPRD:07653|Vega:OTTHUMG00000165093 8 8q24.13 WDYHV motif containing 1 protein-coding WDYHV1 WDYHV motif containing 1 O N-terminal Gln amidase|WDYHV motif-containing protein 1|nt(Q)-amidase|protein N-terminal glutamine amidohydrolase|protein NH2-terminal glutamine deamidase 20121230 -9606 55094 GPATCH1 - ECGP|GPATC1 HGNC:24658|Ensembl:ENSG00000076650|HPRD:11008|Vega:OTTHUMG00000180341 19 19q13.11 G patch domain containing 1 protein-coding GPATCH1 G patch domain containing 1 O G patch domain-containing protein 1|evolutionarily conserved G patch domain containing|evolutionarily conserved G-patch domain containing|evolutionarily conserved G-patch domain-containing protein 20121230 -9606 55095 SAMD4B - SMGB|hSmaug2 HGNC:25492|Ensembl:ENSG00000179134|HPRD:10960 19 19q13.2 sterile alpha motif domain containing 4B protein-coding SAMD4B sterile alpha motif domain containing 4B O SAM domain-containing protein 4B|protein Smaug homolog 2|smaug 2|smaug homolog B|sterile alpha motif domain-containing protein 4B 20121230 -9606 55096 EBLN2 GK006 EBLN-2 HGNC:25493|MIM:613250|Ensembl:ENSG00000255423|HPRD:07654|Vega:OTTHUMG00000165897 3 3p13 endogenous Bornavirus-like nucleoprotein 2 protein-coding EBLN2 endogenous Bornavirus-like nucleoprotein 2 O EBLN-1|endogenous Borna-like N element 2|endogenous Borna-like N element-1|endogenous Borna-like N element-2 20121230 -9606 55100 WDR70 - - HGNC:25495|Ensembl:ENSG00000082068|HPRD:08542|Vega:OTTHUMG00000162263 5 5p13.2 WD repeat domain 70 protein-coding WDR70 WD repeat domain 70 O WD repeat-containing protein 70 20121230 -9606 55101 ATP5SL - - HGNC:25496|Ensembl:ENSG00000105341|HPRD:07655|Vega:OTTHUMG00000182342 19 19q13.2 ATP5S-like protein-coding ATP5SL ATP5S-like O ATP synthase subunit s-like protein 20121230 -9606 55102 ATG2B - C14orf103 HGNC:20187|Ensembl:ENSG00000066739|HPRD:12626|Vega:OTTHUMG00000149933 14 14q32.2 autophagy related 2B protein-coding ATG2B autophagy related 2B O ATG2 autophagy related 2 homolog B|autophagy-related protein 2 homolog B 20121230 -9606 55103 RALGPS2 RP4-595C2.1 dJ595C2.1 HGNC:30279|Ensembl:ENSG00000116191|HPRD:15206|Vega:OTTHUMG00000035076 1 1q25.2 Ral GEF with PH domain and SH3 binding motif 2 protein-coding RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 O Ral-A exchange factor RalGPS2|ral GEF with PH domain and SH3-binding motif 2|ralA exchange factor RalGPS2|ras-specific guanine nucleotide-releasing factor RalGPS2 20121230 -9606 55105 GPATCH2 - CT110|GPATC2|PPP1R30|RP11-361K17.1 HGNC:25499|Ensembl:ENSG00000092978|HPRD:07657|Vega:OTTHUMG00000000527 1 1q41 G patch domain containing 2 protein-coding GPATCH2 G patch domain containing 2 O G patch domain-containing protein 2|cancer/testis antigen 110|protein phosphatase 1, regulatory subunit 30 20121230 -9606 55106 SLFN12 - SLFN3 HGNC:25500|MIM:614955|Ensembl:ENSG00000172123|HPRD:08543|Vega:OTTHUMG00000132952 17 17q12 schlafen family member 12 protein-coding SLFN12 schlafen family member 12 O - 20121230 -9606 55107 ANO1 - DOG1|ORAOV2|TAOS2|TMEM16A HGNC:21625|MIM:610108|Ensembl:ENSG00000131620|HPRD:18202|Vega:OTTHUMG00000167204 11 11q13.3 anoctamin 1, calcium activated chloride channel protein-coding ANO1 anoctamin 1, calcium activated chloride channel O anoctamin-1|discovered on gastrointestinal stromal tumors protein 1|oral cancer overexpressed 2|transmembrane protein 16A (eight membrane-spanning domains)|tumor-amplified and overexpressed sequence 2 20121230 -9606 55108 BSDC1 RP4-811H24.7 - HGNC:25501|Ensembl:ENSG00000160058|HPRD:07658|Vega:OTTHUMG00000007588 1 1p35.1 BSD domain containing 1 protein-coding BSDC1 BSD domain containing 1 O BSD domain-containing protein 1 20121230 -9606 55109 AGGF1 - GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q HGNC:24684|MIM:608464|Ensembl:ENSG00000164252|HPRD:07621|Vega:OTTHUMG00000102132 5 5q13.3 angiogenic factor with G patch and FHA domains 1 protein-coding AGGF1 angiogenic factor with G patch and FHA domains 1 O G patch domain-containing protein 7|angiogenic factor VG5Q|vasculogenesis gene on 5q protein 20121230 -9606 55110 MAGOHB - MGN2|mago|magoh HGNC:25504|Ensembl:ENSG00000111196|HPRD:08544|Vega:OTTHUMG00000168407 12 12p13.2 mago-nashi homolog B (Drosophila) protein-coding MAGOHB mago-nashi homolog B (Drosophila) O mago-nashi homolog 2|protein mago nashi homolog 2 20121230 -9606 55111 PLEKHJ1 - GNRPX HGNC:18211|Ensembl:ENSG00000104886|HPRD:15150|Vega:OTTHUMG00000180425 19 19p13.3 pleckstrin homology domain containing, family J member 1 protein-coding PLEKHJ1 pleckstrin homology domain containing, family J member 1 O 9530063M10Rik|PH domain-containing family J member 1|guanine nucleotide releasing protein x|guanine nucleotide-releasing protein x|pleckstrin homology domain-containing family J member 1 20121230 -9606 55112 WDR60 tcag7.557 - HGNC:21862|Ensembl:ENSG00000126870|HPRD:08545|Vega:OTTHUMG00000151443 7 7q36.3 WD repeat domain 60 protein-coding WDR60 WD repeat domain 60 O WD repeat-containing protein 60 20121230 -9606 55113 XKR8 - RP11-460I13.3|XRG8 HGNC:25508|Ensembl:ENSG00000158156|HPRD:07661|Vega:OTTHUMG00000003912 1 1p35.3 XK, Kell blood group complex subunit-related family, member 8 protein-coding XKR8 XK, Kell blood group complex subunit-related family, member 8 O X Kell blood group precursor-related family, member 8|XK-related protein 8 20121230 -9606 55114 ARHGAP17 hCG_1984576 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH1|RICH1B|WBP15 HGNC:18239|MIM:608293|Ensembl:ENSG00000140750|HPRD:12207|Vega:OTTHUMG00000177372 16 16p12.1 Rho GTPase activating protein 17 protein-coding ARHGAP17 Rho GTPase activating protein 17 O RICH-1|RhoGAP interacting with CIP4 homologs 1|neuron-associated developmentally regulated protein|rho GTPase-activating protein 17|rho-type GTPase-activating protein 17|rhoGAP interacting with CIP4 homologs protein 1 20121230 -9606 55116 TMEM39B RP11-277A4.3 - HGNC:25510|Ensembl:ENSG00000121775|HPRD:07662|Vega:OTTHUMG00000004020 1 1p35.1 transmembrane protein 39B protein-coding TMEM39B transmembrane protein 39B O - 20121230 -9606 55117 SLC6A15 - NTT73|SBAT1|V7-3|hv7-3 HGNC:13621|MIM:607971|Ensembl:ENSG00000072041|HPRD:12141|Vega:OTTHUMG00000169742 12 12q21.3 solute carrier family 6 (neutral amino acid transporter), member 15 protein-coding SLC6A15 solute carrier family 6 (neutral amino acid transporter), member 15 O homolog of rat orphan transporter v7-3|orphan sodium- and chloride-dependent neurotransmitter transporter NTT73|orphan transporter v7-3|sodium- and chloride-dependent neurotransmitter transporter NTT73|sodium-coupled branched-chain amino-acid transporter 1|sodium-dependent neutral amino acid transporter B(0)AT2|sodium/chloride dependent neurotransmitter transporter Homo sapiens orphan neurotransmitter transporter NTT7|solute carrier family 6 (neurotransmitter transporter), member 15|solute carrier family 6 member 15|solute carrier family 6, member 15|transporter v7-3 20121230 -9606 55118 CRTAC1 RP11-459F3.1 ASPIC|ASPIC1|CEP-68 HGNC:14882|MIM:606276|Ensembl:ENSG00000095713|HPRD:10447|Vega:OTTHUMG00000018871 10 10q22 cartilage acidic protein 1 protein-coding CRTAC1 cartilage acidic protein 1 O acidic secreted protein in cartilage|chondrocyte expressed protein 68 kDa CEP-68 20121230 -9606 55119 PRPF38B - NET1|RP11-293A10.1 HGNC:25512|Ensembl:ENSG00000134186|HPRD:07664|Vega:OTTHUMG00000010991 1 1p13.3 PRP38 pre-mRNA processing factor 38 (yeast) domain containing B protein-coding PRPF38B PRP38 pre-mRNA processing factor 38 (yeast) domain containing B O pre-mRNA-splicing factor 38B|sarcoma antigen NY-SAR-27 20121230 -9606 55120 FANCL - FAAP43|PHF9|POG HGNC:20748|MIM:608111|Ensembl:ENSG00000115392|HPRD:06997|Vega:OTTHUMG00000129349 2 2p16.1 Fanconi anemia, complementation group L protein-coding FANCL Fanconi anemia, complementation group L O E3 ubiquitin-protein ligase FANCL|PHD finger protein 9|fanconi anemia group L protein|fanconi anemia-associated polypeptide of 43 kDa 20121230 -9606 55122 AKIRIN2 - C6orf166|FBI1|dJ486L4.2 HGNC:21407|Ensembl:ENSG00000135334|HPRD:12864|Vega:OTTHUMG00000015180 6 6q15 akirin 2 protein-coding AKIRIN2 akirin 2 O akirin-2|fourteen-three-three beta interactant 1 20121230 -9606 55124 PIWIL2 - CT80|HILI|PIWIL1L|mili HGNC:17644|MIM:610312|Ensembl:ENSG00000197181|HPRD:11434|Vega:OTTHUMG00000097767 8 8p21.3 piwi-like 2 (Drosophila) protein-coding PIWIL2 piwi-like 2 (Drosophila) O Miwi like|cancer/testis antigen 80|piwi-like protein 2|piwil2-like protein 20121230 -9606 55125 CEP192 PP8407 PPP1R62 HGNC:25515|Ensembl:ENSG00000101639|HPRD:10855|Vega:OTTHUMG00000160693 18 18p11.21 centrosomal protein 192kDa protein-coding CEP192 centrosomal protein 192kDa O centrosomal protein of 192 kDa|protein phosphatase 1, regulatory subunit 62 20121230 -9606 55127 HEATR1 RP11-385F5.3 BAP28|UTP10 HGNC:25517|Ensembl:ENSG00000119285|HPRD:17569|Vega:OTTHUMG00000040061 1 1q43 HEAT repeat containing 1 protein-coding HEATR1 HEAT repeat containing 1 O HEAT repeat-containing protein 1|UTP10, small subunit (SSU) processome component, homolog|protein BAP28 20121230 -9606 55128 TRIM68 - GC109|RNF137|SS-56|SS56 HGNC:21161|MIM:613184|Ensembl:ENSG00000167333|HPRD:11507|Vega:OTTHUMG00000165723 11 11p15.4 tripartite motif containing 68 protein-coding TRIM68 tripartite motif containing 68 O E3 ubiquitin-protein ligase TRIM68|Ro/SSA1 related protein|SSA protein SS-56|ring finger protein 137|tripartite motif-containing 68|tripartite motif-containing protein 68 20121230 -9606 55129 ANO10 - SCAR10|TMEM16K HGNC:25519|MIM:613726|Ensembl:ENSG00000160746|HPRD:07667|Vega:OTTHUMG00000133044 3 3p22.1 anoctamin 10 protein-coding ANO10 anoctamin 10 O anoctamin-10|transmembrane protein 16K 20121230 -9606 55130 ARMC4 RP11-691I13.1 - HGNC:25583|Ensembl:ENSG00000169126|HPRD:10663|Vega:OTTHUMG00000017867 10 10p12.1-p11.23 armadillo repeat containing 4 protein-coding ARMC4 armadillo repeat containing 4 O armadillo repeat-containing protein 4 20121230 -9606 55131 RBM28 - - HGNC:21863|MIM:612074|Ensembl:ENSG00000106344|HPRD:07668|Vega:OTTHUMG00000157711 7 7q32.1 RNA binding motif protein 28 protein-coding RBM28 RNA binding motif protein 28 O 2810480G15Rik|RNA-binding protein 28 20121230 -9606 55132 LARP1B - LARP2 HGNC:24704|Ensembl:ENSG00000138709|HPRD:10963|Vega:OTTHUMG00000133343 4 4q28.2 La ribonucleoprotein domain family, member 1B protein-coding LARP1B La ribonucleoprotein domain family, member 1B O La ribonucleoprotein domain family, member 2|la ribonucleoprotein domain family member 2|la-related protein 1B|la-related protein 2 20121230 -9606 55133 SRBD1 - - HGNC:25521|Ensembl:ENSG00000068784|HPRD:07669|Vega:OTTHUMG00000128814 2 2p21 S1 RNA binding domain 1 protein-coding SRBD1 S1 RNA binding domain 1 O H_NH0576F01.1|S1 RNA-binding domain-containing protein 1|WUGSC:H_NH0576F01.1 20121230 -9606 55135 WRAP53 - DKCB3|TCAB1|WDR79 HGNC:25522|MIM:612661|Ensembl:ENSG00000141499|HPRD:07670|Vega:OTTHUMG00000134323 17 17p13.1 WD repeat containing, antisense to TP53 protein-coding WRAP53 WD repeat containing, antisense to TP53 O WD repeat domain 79|WD repeat-containing protein 79|WD40 protein Wrap53|WD40 repeat-containing protein encoding RNA antisense to p53|telomerase Cajal body protein 1 20121230 -9606 55137 FIGN - - HGNC:13285|MIM:605295|Ensembl:ENSG00000182263|HPRD:07287|Vega:OTTHUMG00000074059 2 2q24.3 fidgetin protein-coding FIGN fidgetin O - 20121230 -9606 55138 FAM90A1 - - HGNC:25526|MIM:613041|Ensembl:ENSG00000171847|HPRD:07672|Vega:OTTHUMG00000168641 12 12p13.31 family with sequence similarity 90, member A1 protein-coding FAM90A1 family with sequence similarity 90, member A1 O protein FAM90A1 20121230 -9606 55139 ANKZF1 - ZNF744 HGNC:25527|Ensembl:ENSG00000163516|HPRD:07673|Vega:OTTHUMG00000154533 2 2q35 ankyrin repeat and zinc finger domain containing 1 protein-coding ANKZF1 ankyrin repeat and zinc finger domain containing 1 O ankyrin repeat and zinc finger domain-containing protein 1|zinc finger protein 744 20121230 -9606 55140 ELP3 - KAT9 HGNC:20696|MIM:612722|Ensembl:ENSG00000134014|HPRD:10936|Vega:OTTHUMG00000102124 8 8p21.1 elongator acetyltransferase complex subunit 3 protein-coding ELP3 elongator acetyltransferase complex subunit 3 O elongation protein 3 homolog|elongator complex protein 3|hELP3 20121230 -9606 55142 HAUS2 - C15orf25|CEP27|HsT17025 HGNC:25530|MIM:613429|Ensembl:ENSG00000137814|HPRD:07675|Vega:OTTHUMG00000130678 15 15q15.2 HAUS augmin-like complex, subunit 2 protein-coding HAUS2 HAUS augmin-like complex, subunit 2 O HAUS augmin-like complex subunit 2|centrosomal protein 27kDa|centrosomal protein of 27 kDa 20121230 -9606 55143 CDCA8 - BOR|BOREALIN|DasraB|MESRGP HGNC:14629|MIM:609977|Ensembl:ENSG00000134690|HPRD:13017|Vega:OTTHUMG00000004320 1 1p34.3 cell division cycle associated 8 protein-coding CDCA8 cell division cycle associated 8 O Dasra B|borealin|cell division cycle-associated protein 8|dasra-B|hDasra-B|pluripotent embryonic stem cell-related gene 3 protein 20121230 -9606 55144 LRRC8D RP11-302M6.1 LRRC5 HGNC:16992|MIM:612890|Ensembl:ENSG00000171492|HPRD:11287|Vega:OTTHUMG00000010583 1 1p22.2 leucine rich repeat containing 8 family, member D protein-coding LRRC8D leucine rich repeat containing 8 family, member D O leucine rich repeat containing 5|leucine-rich repeat-containing 5|leucine-rich repeat-containing protein 5|leucine-rich repeat-containing protein 8D 20121230 -9606 55145 THAP1 - DYT6 HGNC:20856|MIM:609520|Ensembl:ENSG00000131931|HPRD:15496|Vega:OTTHUMG00000165276 8 8p11.21 THAP domain containing, apoptosis associated protein 1 protein-coding THAP1 THAP domain containing, apoptosis associated protein 1 O 4833431A01Rik|THAP domain protein 1|THAP domain-containing protein 1|nuclear proapoptotic factor 20121230 -9606 55146 ZDHHC4 DC1 ZNF374 HGNC:18471|Ensembl:ENSG00000136247|HPRD:15719|Vega:OTTHUMG00000023579 7 7p22.1 zinc finger, DHHC-type containing 4 protein-coding ZDHHC4 zinc finger, DHHC-type containing 4 O DHHC-4|probable palmitoyltransferase ZDHHC4|zinc finger DHHC domain-containing protein 4|zinc finger protein 374|zinc finger, DHHC domain containing 4 20121230 -9606 55147 RBM23 PP239 CAPERbeta|RNPC4 HGNC:20155|Ensembl:ENSG00000100461|HPRD:15227|Vega:OTTHUMG00000171467 14 14q11.2 RNA binding motif protein 23 protein-coding RBM23 RNA binding motif protein 23 O RNA-binding motif protein 23|RNA-binding region (RNP1, RRM) containing 4|RNA-binding region-containing protein 4|probable RNA-binding protein 23|splicing factor SF2 20121230 -9606 55148 UBR7 - C14orf130 HGNC:20344|MIM:613816|Ensembl:ENSG00000012963|HPRD:16602|Vega:OTTHUMG00000171268 14 14q32.12 ubiquitin protein ligase E3 component n-recognin 7 (putative) protein-coding UBR7 ubiquitin protein ligase E3 component n-recognin 7 (putative) O N-recognin-7|putative E3 ubiquitin-protein ligase UBR7 20121230 -9606 55149 MTPAP RP11-305E6.3 PAPD1|SPAX4 HGNC:25532|MIM:613669|Ensembl:ENSG00000107951|HPRD:15097|Vega:OTTHUMG00000017895 10 10p11.23 mitochondrial poly(A) polymerase protein-coding MTPAP mitochondrial poly(A) polymerase O PAP-associated domain-containing protein 1|TUTase 1|poly(A) RNA polymerase, mitochondrial|polynucleotide adenylyltransferase|terminal uridylyltransferase 1 20121230 -9606 55150 C19orf73 - - HGNC:25534|Ensembl:ENSG00000221916|HPRD:07676 19 19q13.33 chromosome 19 open reading frame 73 protein-coding C19orf73 chromosome 19 open reading frame 73 O putative uncharacterized protein C19orf73 20121230 -9606 55151 TMEM38B RP11-219P18.1 C9orf87|D4Ertd89e|TRIC-B|TRICB|bA219P18.1 HGNC:25535|MIM:611236|Ensembl:ENSG00000095209|HPRD:15538|Vega:OTTHUMG00000020429 9 9q31.2 transmembrane protein 38B protein-coding TMEM38B transmembrane protein 38B O trimeric intracellular cation channel type B 20121230 -9606 55152 DALRD3 - - HGNC:25536|Ensembl:ENSG00000178149|HPRD:08549|Vega:OTTHUMG00000156748 3 3p21.31 DALR anticodon binding domain containing 3 protein-coding DALRD3 DALR anticodon binding domain containing 3 O DALR anticodon-binding domain-containing protein 3 20121230 -9606 55153 SDAD1 - - HGNC:25537|Ensembl:ENSG00000198301|HPRD:10214|Vega:OTTHUMG00000130111 4 4q21.1 SDA1 domain containing 1 protein-coding SDAD1 SDA1 domain containing 1 O SDA1 domain-containing protein 1|hSDA|nucleolar protein 130|protein SDA1 homolog 20121230 -9606 55154 MSTO1 LST005 MST HGNC:29678|Ensembl:ENSG00000125459|HPRD:16904|Vega:OTTHUMG00000014014 1 1q22 misato homolog 1 (Drosophila) protein-coding MSTO1 misato homolog 1 (Drosophila) O protein misato homolog 1 20121230 -9606 55156 ARMC1 - Arcp HGNC:17684|Ensembl:ENSG00000104442|HPRD:16506|Vega:OTTHUMG00000164374 8 8q13.1 armadillo repeat containing 1 protein-coding ARMC1 armadillo repeat containing 1 O armadillo repeat-containing protein 1 20121230 -9606 55157 DARS2 - ASPRS|LBSL|MT-ASPRS|RP3-383J4.2 HGNC:25538|MIM:610956|Ensembl:ENSG00000117593|HPRD:07677|Vega:OTTHUMG00000034803 1 1q25.1 aspartyl-tRNA synthetase 2, mitochondrial protein-coding DARS2 aspartyl-tRNA synthetase 2, mitochondrial O aspartate tRNA ligase 2, mitochondrial|aspartate--tRNA ligase, mitochondrial|aspartyl-tRNA synthetase, mitochondrial 20121230 -9606 55159 RFWD3 - RNF201 HGNC:25539|MIM:614151|Ensembl:ENSG00000168411|HPRD:07678|Vega:OTTHUMG00000177368 16 16q23.1 ring finger and WD repeat domain 3 protein-coding RFWD3 ring finger and WD repeat domain 3 O E3 ubiquitin-protein ligase RFWD3|RING finger and WD repeat domain-containing protein 3|RING finger protein 201 20121230 -9606 55160 ARHGEF10L RP11-473A10.1 GrinchGEF HGNC:25540|MIM:612494|Ensembl:ENSG00000074964|HPRD:07679|Vega:OTTHUMG00000002514 1 1p36.13 Rho guanine nucleotide exchange factor (GEF) 10-like protein-coding ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like O rho guanine nucleotide exchange factor 10-like protein 20121230 -9606 55161 TMEM33 - 1600019D15Rik|SHINC3 HGNC:25541|Ensembl:ENSG00000109133|HPRD:07680|Vega:OTTHUMG00000099381 4 4p13 transmembrane protein 33 protein-coding TMEM33 transmembrane protein 33 O - 20121230 -9606 55163 PNPO - PDXPO HGNC:30260|MIM:603287|Ensembl:ENSG00000108439|HPRD:04476|Vega:OTTHUMG00000178295 17 17q21.32 pyridoxamine 5'-phosphate oxidase protein-coding PNPO pyridoxamine 5'-phosphate oxidase O pyridoxal 5'-phosphate synthase|pyridoxamine-phosphate oxidase|pyridoxine 5'-phosphate oxidase|pyridoxine-5'-phosphate oxidase 20121230 -9606 55164 SHQ1 - Shq1p HGNC:25543|MIM:613663|Ensembl:ENSG00000144736|HPRD:07682|Vega:OTTHUMG00000158814 3 3p13 SHQ1 homolog (S. cerevisiae) protein-coding SHQ1 SHQ1 homolog (S. cerevisiae) O protein SHQ1 homolog 20121230 -9606 55165 CEP55 RP11-30E16.2 C10orf3|CT111|URCC6 HGNC:1161|MIM:610000|Ensembl:ENSG00000138180|HPRD:12569|Vega:OTTHUMG00000018774 10 10q23.33 centrosomal protein 55kDa protein-coding CEP55 centrosomal protein 55kDa O cancer/testis antigen 111|centrosomal protein of 55 kDa|up-regulated in colon cancer 6 20121230 -9606 55166 CENPQ - C6orf139|CENP-Q HGNC:21347|MIM:611506|Ensembl:ENSG00000031691|HPRD:10788|Vega:OTTHUMG00000014815 6 6p12.3 centromere protein Q protein-coding CENPQ centromere protein Q O - 20121230 -9606 55167 MSL2 - MSL-2|MSL2L1|RNF184 HGNC:25544|MIM:614802|Ensembl:ENSG00000174579|HPRD:08550|Vega:OTTHUMG00000159793 3 3q22.3 male-specific lethal 2 homolog (Drosophila) protein-coding MSL2 male-specific lethal 2 homolog (Drosophila) O MSL2-like 1|male-specific lethal 2 homolog|male-specific lethal 2-like 1|male-specific lethal-2 homolog 1|ring finger protein 184 20121230 -9606 55168 MRPS18A RP1-261G23.2 HumanS18b|MRP-S18-3|MRPS18-3|S18bmt HGNC:14515|MIM:611981|Ensembl:ENSG00000096080|HPRD:14780|Vega:OTTHUMG00000014750 6 6p21.3 mitochondrial ribosomal protein S18A protein-coding MRPS18A mitochondrial ribosomal protein S18A O 28S ribosomal protein S18-3, mitochondrial|28S ribosomal protein S18a, mitochondrial|MRP-S18-a|S18mt-a|mitochondrial ribosomal protein S18-3 20121230 -9606 55170 PRMT6 - HRMT1L6 HGNC:18241|MIM:608274|Ensembl:ENSG00000198890|HPRD:10505|Vega:OTTHUMG00000010964 1 1p13.3 protein arginine methyltransferase 6 protein-coding PRMT6 protein arginine methyltransferase 6 O HMT1 hnRNP methyltransferase-like 6|heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 6|histone-arginine N-methyltransferase PRMT6|protein arginine N-methyltransferase 6 20121230 -9606 55171 TBCCD1 - - HGNC:25546|Ensembl:ENSG00000113838|HPRD:07684|Vega:OTTHUMG00000156613 3 3q27.3 TBCC domain containing 1 protein-coding TBCCD1 TBCC domain containing 1 O TBCC domain-containing protein 1 20121230 -9606 55172 DNAAF2 - C14orf104|CILD10|KTU|PF13 HGNC:20188|MIM:612517|Ensembl:ENSG00000165506|HPRD:12627|Vega:OTTHUMG00000152331 14 14q21.3 dynein, axonemal, assembly factor 2 protein-coding DNAAF2 dynein, axonemal, assembly factor 2 O dynein assembly factor 2, axonemal|kintoun|protein kintoun 20121230 -9606 55173 MRPS10 MSTP040 MRP-S10|PNAS-122 HGNC:14502|MIM:611976|Ensembl:ENSG00000048544|HPRD:14775|Vega:OTTHUMG00000014694 6 6p21.1 mitochondrial ribosomal protein S10 protein-coding MRPS10 mitochondrial ribosomal protein S10 O 28S ribosomal protein S10, mitochondrial|S10mt|mitochondrial 28S ribosomal protein S10 20121230 -9606 55174 INTS10 - C8orf35|INT10 HGNC:25548|MIM:611353|Ensembl:ENSG00000104613|HPRD:07686|Vega:OTTHUMG00000131065 8 8p21.3 integrator complex subunit 10 protein-coding INTS10 integrator complex subunit 10 O - 20121230 -9606 55175 KLHL11 - - HGNC:19008|Ensembl:ENSG00000178502|HPRD:13924|Vega:OTTHUMG00000133506 17 17q21.2 kelch-like 11 (Drosophila) protein-coding KLHL11 kelch-like 11 (Drosophila) O kelch-like protein 11 20121230 -9606 55176 SEC61A2 - - HGNC:17702|Ensembl:ENSG00000065665|HPRD:15317|Vega:OTTHUMG00000017679 10 10p14 Sec61 alpha 2 subunit (S. cerevisiae) protein-coding SEC61A2 Sec61 alpha 2 subunit (S. cerevisiae) O Sec61 alpha form 2|protein transport protein Sec61 subunit alpha|protein transport protein Sec61 subunit alpha isoform 2|sec61 alpha-2 20121230 -9606 55177 FAM82A2 hucep-10 FAM82C|RMD-3|RMD3|ptpip51 HGNC:25550|MIM:611873|Ensembl:ENSG00000137824|HPRD:07687|Vega:OTTHUMG00000130066 15 15q15.1 family with sequence similarity 82, member A2 protein-coding FAM82A2 family with sequence similarity 82, member A2 O TCPTP-interacting protein 51|cerebral protein 10|family with sequence similarity 82, member C|microtubule-associated protein|protein tyrosine phosphatase-interacting protein 51|regulator of microtubule dynamics 3|regulator of microtubule dynamics protein 3 20121230 -9606 55178 RNMTL1 HC90 - HGNC:18485|MIM:612600|Ensembl:ENSG00000171861|HPRD:15266|Vega:OTTHUMG00000090285 17 17p13.3 RNA methyltransferase like 1 protein-coding RNMTL1 RNA methyltransferase like 1 O RNA methyltransferase-like protein 1|putative RNA methyltransferase 20121230 -9606 55179 FAIM - FAIM1 HGNC:18703|Ensembl:ENSG00000158234|HPRD:16874|Vega:OTTHUMG00000159885 3 3q22.3 Fas apoptotic inhibitory molecule protein-coding FAIM Fas apoptotic inhibitory molecule O fas apoptotic inhibitory molecule 1 20121230 -9606 55180 LINS - LINS1|WINS1 HGNC:30922|MIM:610350|Ensembl:ENSG00000140471|HPRD:17280|Vega:OTTHUMG00000149865 15 15q26.3 lines homolog (Drosophila) protein-coding LINS lines homolog (Drosophila) O WINS1 protein with Drosophila Lines (Lin) homologous domain|lines homolog 1|protein Lines homolog|protein Lines homolog 1|wnt-signaling molecule Lines homolog 1 20121230 -9606 55181 SMG8 - C17orf71 HGNC:25551|MIM:613175|Ensembl:ENSG00000167447|HPRD:08551|Vega:OTTHUMG00000179365 17 17q22 smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding SMG8 smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans) O amplified in breast cancer gene 2 protein|protein SMG8|protein smg-8 homolog 20121230 -9606 55182 RNF220 RP4-678E16.1 C1orf164 HGNC:25552|Ensembl:ENSG00000187147|HPRD:13336|Vega:OTTHUMG00000007697 1 1p34.1 ring finger protein 220 protein-coding RNF220 ring finger protein 220 O E3 ubiquitin-protein ligase RNF220 20121230 -9606 55183 RIF1 - - HGNC:23207|MIM:608952|Ensembl:ENSG00000080345|HPRD:10603|Vega:OTTHUMG00000131886 2 2q23.3 RAP1 interacting factor homolog (yeast) protein-coding RIF1 RAP1 interacting factor homolog (yeast) O rap1-interacting factor 1 homolog|telomere-associated protein RIF1 20121230 -9606 55184 DZANK1 - ANKRD64|C20orf12|C20orf84|bA189K21.1|bA189K21.8|dJ568F9.2 HGNC:15858|Ensembl:ENSG00000089091|HPRD:12742|Vega:OTTHUMG00000031968 20 20p11.23 double zinc ribbon and ankyrin repeat domains 1 protein-coding DZANK1 double zinc ribbon and ankyrin repeat domains 1 O ankyrin repeat domain 64|ankyrin repeat-containing protein C20orf12|double zinc ribbon and ankyrin repeat-containing protein 1 20121230 -9606 55186 SLC25A36 - PNC2 HGNC:25554|Ensembl:ENSG00000114120|HPRD:07688|Vega:OTTHUMG00000160260 3 3q23 solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 protein-coding SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 O solute carrier family 25 member 36|solute carrier family 25, member 36 20121230 -9606 55187 VPS13D - - HGNC:23595|MIM:608877|Ensembl:ENSG00000048707|HPRD:10593|Vega:OTTHUMG00000013155 1 1p36.22 vacuolar protein sorting 13 homolog D (S. cerevisiae) protein-coding VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) O vacuolar protein sorting 13D|vacuolar protein sorting-associated protein 13D 20121230 -9606 55188 RIC8B - RIC8|hSyn HGNC:25555|MIM:609147|Ensembl:ENSG00000111785|HPRD:16452|Vega:OTTHUMG00000144188 12 12q23.3 resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) protein-coding RIC8B resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) O brain synembrin|brain synembryn|synembryn-B 20121230 -9606 55190 NUDT11 RP11-348F1.5 APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta HGNC:18011|MIM:300528|Ensembl:ENSG00000196368|HPRD:06667|Vega:OTTHUMG00000021531 X Xp11.22 nudix (nucleoside diphosphate linked moiety X)-type motif 11 protein-coding NUDT11 nudix (nucleoside diphosphate linked moiety X)-type motif 11 O DIPP-3-beta|DIPP3-beta|diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 3-beta|diadenosine hexaphosphate hydrolase (AMP-forming)|diphosphoinositol polyphosphate phosphohydrolase 3, beta|diphosphoinositol polyphosphate phosphohydrolase 3-beta|hAps1|nucleoside diphosphate-linked moiety X motif 11|nudix motif 11 20121230 -9606 55191 NADSYN1 - - HGNC:29832|MIM:608285|Ensembl:ENSG00000172890|HPRD:16309|Vega:OTTHUMG00000167375 11 11q13.4 NAD synthetase 1 protein-coding NADSYN1 NAD synthetase 1 O NAD(+) synthase|NAD(+) synthetase|glutamine-dependent NAD synthetase|glutamine-dependent NAD(+) synthetase 20121230 -9606 55192 DNAJC17 - - HGNC:25556|Ensembl:ENSG00000104129|HPRD:07111|Vega:OTTHUMG00000130065 15 15q15.1 DnaJ (Hsp40) homolog, subfamily C, member 17 protein-coding DNAJC17 DnaJ (Hsp40) homolog, subfamily C, member 17 O dnaJ homolog subfamily C member 17 20121230 -9606 55193 PBRM1 - BAF180|PB1 HGNC:30064|MIM:606083|Ensembl:ENSG00000163939|Vega:OTTHUMG00000152663 3 3p21 polybromo 1 protein-coding PBRM1 polybromo 1 O BRG1-associated factor 180|polybromo-1D|protein polybromo-1 20121230 -9606 55194 EVA1B - C1orf78|FAM176B|RP11-268J15.2 HGNC:25558|Ensembl:ENSG00000142694|HPRD:07690|Vega:OTTHUMG00000007867 1 1p34.3 eva-1 homolog B (C. elegans) protein-coding EVA1B eva-1 homolog B (C. elegans) O family with sequence similarity 176, member B|protein FAM176B 20121230 -9606 55195 C14orf105 - - HGNC:20189|Ensembl:ENSG00000100557|HPRD:12628|Vega:OTTHUMG00000140317 14 14q22.3 chromosome 14 open reading frame 105 protein-coding C14orf105 chromosome 14 open reading frame 105 O uncharacterized protein C14orf105 20121230 -9606 55196 KIAA1551 - C12orf35 HGNC:25559|Ensembl:ENSG00000174718|HPRD:07691|Vega:OTTHUMG00000128501 12 12p11.21 KIAA1551 protein-coding KIAA1551 KIAA1551 O uncharacterized protein C12orf35|uncharacterized protein KIAA1551 20121230 -9606 55197 RPRD1A - HsT3101|P15RS HGNC:25560|MIM:610347|Ensembl:ENSG00000141425|HPRD:10134|Vega:OTTHUMG00000132591 18 18q12.2 regulation of nuclear pre-mRNA domain containing 1A protein-coding RPRD1A regulation of nuclear pre-mRNA domain containing 1A O Cyclin-dependent kinase inhibitor 2B-related protein (p15INK4B-related protein)|cyclin-dependent kinase 2B-inhibitor-related protein|p15INK4B-related protein|regulation of nuclear pre-mRNA domain-containing protein 1A 20121230 -9606 55198 APPL2 - DIP13B HGNC:18242|MIM:606231|Ensembl:ENSG00000136044|HPRD:06945|Vega:OTTHUMG00000169853 12 12q24.1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 protein-coding APPL2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 O DCC-interacting protein 13-beta|DIP13 beta|adapter protein containing PH domain, PTB domain and leucine zipper motif 2 20121230 -9606 55199 FAM86C1 - FAM86C HGNC:25561|Ensembl:ENSG00000158483|HPRD:13337|Vega:OTTHUMG00000160552 11 11q13.4 family with sequence similarity 86, member C1 protein-coding FAM86C1 family with sequence similarity 86, member C1 O family with sequence similarity 86, member C|protein FAM86C1 20121230 -9606 55200 PLEKHG6 - MyoGEF HGNC:25562|MIM:611743|Ensembl:ENSG00000008323|HPRD:07692|Vega:OTTHUMG00000168266 12 12p13.31 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding PLEKHG6 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 O PH domain-containing family G member 6|myosin interacting guanine nucleotide exchange factor|myosin-interacting guanine nucleotide exchange factor|pleckstrin homology domain-containing family G member 6 20121230 -9606 55201 MAP1S - BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1 HGNC:15715|MIM:607573|Ensembl:ENSG00000130479|HPRD:10461 19 19p13.11 microtubule-associated protein 1S protein-coding MAP1S microtubule-associated protein 1S O BPY2 interacting protein 1|BPY2-interacting protein 1|MAP-1S|VCY2 interacting protein 1|VCY2-interacting protein 1|microtubule-associated protein 8|variable charge Y chromosome 2-interacting protein 1 20121230 -9606 55203 LGI2 - LGIL2 HGNC:18710|MIM:608301|Ensembl:ENSG00000153012|HPRD:06431|Vega:OTTHUMG00000097749 4 4p15.2 leucine-rich repeat LGI family, member 2 protein-coding LGI2 leucine-rich repeat LGI family, member 2 O LGI1-like protein 2|leucine-rich glioma-inactivated protein 2|leucine-rich repeat LGI family member 2|leucine-rich, glioma inactivated 2 20121230 -9606 55204 GOLPH3L RP11-54A4.7 GPP34R HGNC:24882|MIM:612208|Ensembl:ENSG00000143457|HPRD:17048|Vega:OTTHUMG00000035009 1 1q21.3 golgi phosphoprotein 3-like protein-coding GOLPH3L golgi phosphoprotein 3-like O GPP34-related protein|Golgi phosphoprotein 3-like 20121230 -9606 55205 ZNF532 - - HGNC:30940|Ensembl:ENSG00000074657|HPRD:11724|Vega:OTTHUMG00000132759 18 18q21.32 zinc finger protein 532 protein-coding ZNF532 zinc finger protein 532 O - 20121230 -9606 55206 SBNO1 - MOP3|Sno HGNC:22973|MIM:614274|Ensembl:ENSG00000139697|HPRD:11533 12 12q24.31 strawberry notch homolog 1 (Drosophila) protein-coding SBNO1 strawberry notch homolog 1 (Drosophila) O monocyte protein 3|protein strawberry notch homolog 1 20121230 -9606 55207 ARL8B - ARL10C|Gie1 HGNC:25564|Ensembl:ENSG00000134108|HPRD:12483|Vega:OTTHUMG00000090463 3 3p26.1 ADP-ribosylation factor-like 8B protein-coding ARL8B ADP-ribosylation factor-like 8B O ADP-ribosylation factor-like 10C|ADP-ribosylation factor-like protein 10C|ADP-ribosylation factor-like protein 8B|novel small G protein indispensable for equal chromosome segregation 1 20121230 -9606 55208 DCUN1D2 RP11-102K13.4 C13orf17 HGNC:20328|Ensembl:ENSG00000150401|HPRD:12614|Vega:OTTHUMG00000017390 13 13q34 DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae) protein-coding DCUN1D2 DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae) O DCN1-like protein 2|DCUN1 domain-containing protein 2|defective in cullin neddylation protein 1-like protein 2 20121230 -9606 55209 SETD5 - - HGNC:25566|Ensembl:ENSG00000168137|Vega:OTTHUMG00000150491 3 3p25.3 SET domain containing 5 protein-coding SETD5 SET domain containing 5 O SET domain-containing protein 5 20121230 -9606 55210 ATAD3A RP5-832C2.1 - HGNC:25567|MIM:612316|Ensembl:ENSG00000197785|HPRD:12500|Vega:OTTHUMG00000000575 1 1p36.33 ATPase family, AAA domain containing 3A protein-coding ATAD3A ATPase family, AAA domain containing 3A O ATPase family AAA domain-containing protein 3A 20121230 -9606 55211 DPPA4 - 2410091M23Rik HGNC:19200|MIM:614125|Ensembl:ENSG00000121570|HPRD:16836|Vega:OTTHUMG00000159222 3 3q13.13 developmental pluripotency associated 4 protein-coding DPPA4 developmental pluripotency associated 4 O developmental pluripotency-associated protein 4 20121230 -9606 55212 BBS7 - BBS2L1 HGNC:18758|MIM:607590|Ensembl:ENSG00000138686|HPRD:07399|Vega:OTTHUMG00000133076 4 4q27 Bardet-Biedl syndrome 7 protein-coding BBS7 Bardet-Biedl syndrome 7 O BBS2-like 1|BBS2-like protein 1|Bardet-Biedl syndrome 7 protein 20121230 -9606 55213 RCBTB1 - CLLD7|CLLL7|GLP|RP11-185C18.1 HGNC:18243|MIM:607867|Ensembl:ENSG00000136144|HPRD:09713|Vega:OTTHUMG00000016915 13 13q14 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 protein-coding RCBTB1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 O CLL deletion region gene 7 protein|GDP/GTP exchange factor (GEF)-like protein|RCC1 and BTB domain-containing protein 1|chronic lymphocytic leukemia deletion region gene 7 protein|regulator of chromosome condensation and BTB domain-containing protein 1 20121230 -9606 55214 LEPREL1 - MCVD|MLAT4|P3H2 HGNC:19317|MIM:610341|Ensembl:ENSG00000090530|HPRD:17270|Vega:OTTHUMG00000156312 3 3q28 leprecan-like 1 protein-coding LEPREL1 leprecan-like 1 O myxoid liposarcoma-associated protein 4|prolyl 3-hydroxylase 2|prolyl 3-hydroxylase 3 20121230 -9606 55215 FANCI - KIAA1794 HGNC:25568|MIM:611360|Ensembl:ENSG00000140525|HPRD:13339|Vega:OTTHUMG00000132993 15 15q26.1 Fanconi anemia, complementation group I protein-coding FANCI Fanconi anemia, complementation group I O Fanconi anemia group I protein 20121230 -9606 55216 C11orf57 - - HGNC:25569|Ensembl:ENSG00000150776|HPRD:07695|Vega:OTTHUMG00000150213 11 11q23.1 chromosome 11 open reading frame 57 protein-coding C11orf57 chromosome 11 open reading frame 57 O uncharacterized protein C11orf57 20121230 -9606 55217 TMLHE - AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130 HGNC:18308|MIM:300777|Ensembl:ENSG00000185973|HPRD:06743|Vega:OTTHUMG00000022674 X Xq28 trimethyllysine hydroxylase, epsilon protein-coding TMLHE trimethyllysine hydroxylase, epsilon O TML hydroxylase|TML-alpha-ketoglutarate dioxygenase|butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 2|epsilon-trimethyllysine 2-oxoglutarate dioxygenase|epsilon-trimethyllysine hydroxylase|trimethyllysine dioxygenase, mitochondrial 20121230 -9606 55218 EXD2 - C14orf114|EXDL2 HGNC:20217|Ensembl:ENSG00000081177|HPRD:16592|Vega:OTTHUMG00000154496 14 14q24.1 exonuclease 3'-5' domain containing 2 protein-coding EXD2 exonuclease 3'-5' domain containing 2 O exonuclease 3'-5' domain-containing protein 2|exonuclease 3'-5' domain-like 2|exonuclease 3'-5' domain-like-containing protein 2 20121230 -9606 55219 TMEM57 RP3-469D22.2 MACOILIN HGNC:25572|MIM:610301|Ensembl:ENSG00000204178|HPRD:13340|Vega:OTTHUMG00000003473 1 1p36.11|1p36.11 transmembrane protein 57 protein-coding TMEM57 transmembrane protein 57 O macoilin 20121230 -9606 55220 KLHDC8A - - HGNC:25573|MIM:614503|Ensembl:ENSG00000162873|HPRD:07696|Vega:OTTHUMG00000037199 1 1q32.1 kelch domain containing 8A protein-coding KLHDC8A kelch domain containing 8A O S-delta-E1|kelch domain-containing protein 8A|substitute for delta-EGFR expression 1 20121230 -9606 55222 LRRC20 UNQ2429/PRO4989 - HGNC:23421|Ensembl:ENSG00000172731|HPRD:14314|Vega:OTTHUMG00000018407 10 10q22.1 leucine rich repeat containing 20 protein-coding LRRC20 leucine rich repeat containing 20 O leucine-rich repeat-containing protein 20 20121230 -9606 55223 TRIM62 RP11-131M11.1 DEAR1 HGNC:25574|Ensembl:ENSG00000116525|HPRD:07697|Vega:OTTHUMG00000004132 1 1p35.1 tripartite motif containing 62 protein-coding TRIM62 tripartite motif containing 62 O ductal epithelium-associated RING Chromosome 1|tripartite motif-containing 62|tripartite motif-containing protein 62 20121230 -9606 55224 ETNK2 RP11-74C13.2 EKI2|HMFT1716 HGNC:25575|MIM:609859|Ensembl:ENSG00000143845|HPRD:13283|Vega:OTTHUMG00000036061 1 1q32.1 ethanolamine kinase 2 protein-coding ETNK2 ethanolamine kinase 2 O EKI 2|ethanolamine kinase-like protein 20121230 -9606 55225 RAVER2 - - HGNC:25577|MIM:609953|Ensembl:ENSG00000162437|HPRD:11154|Vega:OTTHUMG00000009102 1 1p31.3 ribonucleoprotein, PTB-binding 2 protein-coding RAVER2 ribonucleoprotein, PTB-binding 2 O protein raver-2|ribonucleoprotein PTB-binding 2 20121230 -9606 55226 NAT10 - ALP|NET43 HGNC:29830|MIM:609221|Ensembl:ENSG00000135372|HPRD:10964|Vega:OTTHUMG00000166249 11 11p13 N-acetyltransferase 10 (GCN5-related) protein-coding NAT10 N-acetyltransferase 10 (GCN5-related) O N-acetyltransferase 10|N-acetyltransferase-like protein 20121230 -9606 55227 LRRC1 RP3-523E19.1 LANO|dJ523E19.1 HGNC:14307|MIM:608195|Ensembl:ENSG00000137269|Vega:OTTHUMG00000014885 6 6p12.1 leucine rich repeat containing 1 protein-coding LRRC1 leucine rich repeat containing 1 O LANO adapter protein|LAP (leucine-rich repeats and PDZ) and no PDZ protein|LAP and no PDZ protein|leucine-rich repeat-containing 1|leucine-rich repeat-containing protein 1 20121230 -9606 55228 PNMAL1 - - HGNC:25578|Ensembl:ENSG00000182013|HPRD:08552|Vega:OTTHUMG00000169421 19 19q13.32 paraneoplastic Ma antigen family-like 1 protein-coding PNMAL1 paraneoplastic Ma antigen family-like 1 O PNMA-like 1|PNMA-like protein 1 20121230 -9606 55229 PANK4 RP3-395M20.4 - HGNC:19366|MIM:606162|Ensembl:ENSG00000157881|HPRD:07313|Vega:OTTHUMG00000000791 1 1p36.32 pantothenate kinase 4 protein-coding PANK4 pantothenate kinase 4 O hPanK4|pantothenic acid kinase 4 20121230 -9606 55230 USP40 - - HGNC:20069|MIM:610570|Ensembl:ENSG00000085982|HPRD:07166|Vega:OTTHUMG00000153199 2 2q37.1 ubiquitin specific peptidase 40 protein-coding USP40 ubiquitin specific peptidase 40 O deubiquitinating enzyme 40|ubiquitin carboxyl-terminal hydrolase 40|ubiquitin specific protease 40|ubiquitin thioesterase 40|ubiquitin thiolesterase 40|ubiquitin-specific-processing protease 40 20121230 -9606 55231 CCDC87 - - HGNC:25579|Ensembl:ENSG00000182791|HPRD:07699|Vega:OTTHUMG00000167237 11 11q13.2 coiled-coil domain containing 87 protein-coding CCDC87 coiled-coil domain containing 87 O coiled-coil domain-containing protein 87 20121230 -9606 55233 MOB1A - C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B HGNC:16015|MIM:609281|Ensembl:ENSG00000114978|HPRD:14727|Vega:OTTHUMG00000152833 2 2p13.1 MOB kinase activator 1A protein-coding MOB1A MOB kinase activator 1A O MOB1 Mps One Binder homolog A|MOB1, Mps One Binder kinase activator-like 1B|mob1 alpha|mob1 homolog 1B|mps one binder kinase activator-like 1B 20121230 -9606 55234 SMU1 - BWD|RP11-54K16.3|SMU-1|fSAP57 HGNC:18247|Ensembl:ENSG00000122692|HPRD:11588|Vega:OTTHUMG00000019757 9 9p12 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) protein-coding SMU1 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) O WD40 repeat-containing protein SMU1|brain-enriched WD-repeat protein|functional spliceosome-associated protein 57|smu-1 suppressor of mec-8 and unc-52 protein homolog 20121230 -9606 55236 UBA6 - E1-L2|MOP-4|UBE1L2 HGNC:25581|MIM:611361|Ensembl:ENSG00000033178|HPRD:13341|Vega:OTTHUMG00000129299 4 4q13.2 ubiquitin-like modifier activating enzyme 6 protein-coding UBA6 ubiquitin-like modifier activating enzyme 6 O UBA6, ubiquitin-activating enzyme E1|monocyte protein 4|ubiquitin-activating enzyme 6|ubiquitin-activating enzyme E1-like 2|ubiquitin-activating enzyme E1-like protein 2|ubiquitin-like modifier-activating enzyme 6 20121230 -9606 55237 VRTN - C14orf115|vertnin HGNC:20223|Ensembl:ENSG00000133980|HPRD:16593|Vega:OTTHUMG00000171208 14 14q24.3 vertebrae development associated protein-coding VRTN vertebrae development associated O vertebrae development homolog (pig)|vertnin 20121230 -9606 55238 SLC38A7 - SNAT7 HGNC:25582|MIM:614236|Ensembl:ENSG00000103042|HPRD:07701|Vega:OTTHUMG00000133491 16 16q21 solute carrier family 38, member 7 protein-coding SLC38A7 solute carrier family 38, member 7 O amino acid transporter|putative sodium-coupled neutral amino acid transporter 7 20121230 -9606 55239 OGFOD1 - TPA1 HGNC:25585|Ensembl:ENSG00000087263|HPRD:08553|Vega:OTTHUMG00000133237 16 16q12.2 2-oxoglutarate and iron-dependent oxygenase domain containing 1 protein-coding OGFOD1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 O 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1|TPA1, termination and polyadenylation 1, homolog|termination and polyadenylation 1 homolog 20121230 -9606 55240 STEAP3 - STMP3|TSAP6|dudlin-2 HGNC:24592|MIM:609671|Ensembl:ENSG00000115107|HPRD:10285|Vega:OTTHUMG00000131402 2 2q14.2 STEAP family member 3, metalloreductase protein-coding STEAP3 STEAP family member 3, metalloreductase O 1010001D01Rik|dudlin 2|dudulin 2|dudulin-2|hTSAP6|hpHyde|metalloreductase STEAP3|pHyde|six transmembrane prostate protein 3|six-transmembrane epithelial antigen of prostate 3|tumor suppressor pHyde|tumor suppressor-activated pathway protein 6 20121230 -9606 55243 KIRREL RP11-444M10.2 NEPH1 HGNC:15734|MIM:607428|Ensembl:ENSG00000183853|HPRD:06306|Vega:OTTHUMG00000022438 1 1q21-q25 kin of IRRE like (Drosophila) protein-coding KIRREL kin of IRRE like (Drosophila) O kin of IRRE-like protein 1|kin of irregular chiasm-like protein 1|nephrin related|nephrin-like protein 1 20121230 -9606 55244 SLC47A1 - MATE1 HGNC:25588|MIM:609832|Ensembl:ENSG00000142494|HPRD:07703|Vega:OTTHUMG00000059466 17 17p11.2 solute carrier family 47, member 1 protein-coding SLC47A1 solute carrier family 47, member 1 O MATE-1|hMATE-1|multidrug and toxin extrusion 1|multidrug and toxin extrusion protein 1 20121230 -9606 55245 UQCC RP4-614O4.7 BFZB|C20orf44|CBP3 HGNC:15891|MIM:611797|Ensembl:ENSG00000101019|HPRD:12770|Vega:OTTHUMG00000032335 20 20q11.22 ubiquinol-cytochrome c reductase complex chaperone protein-coding UQCC ubiquinol-cytochrome c reductase complex chaperone O bFGF-repressed Zic-binding protein|basic FGF-repressed Zic-binding protein|cytochrome B protein synthesis 3 homolog|ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog 20121230 -9606 55246 CCDC25 - - HGNC:25591|Ensembl:ENSG00000147419|HPRD:07705|Vega:OTTHUMG00000132173 8 8p21.1 coiled-coil domain containing 25 protein-coding CCDC25 coiled-coil domain containing 25 O coiled-coil domain-containing protein 25 20121230 -9606 55247 NEIL3 - FGP2|FPG2|NEI3|hFPG2|hNEI3 HGNC:24573|MIM:608934|Ensembl:ENSG00000109674|HPRD:16407|Vega:OTTHUMG00000160722 4 4q34.3 nei endonuclease VIII-like 3 (E. coli) protein-coding NEIL3 nei endonuclease VIII-like 3 (E. coli) O DNA glycosylase FPG2|DNA glycosylase hFPG2|DNA glycosylase/AP lyase Neil3|endonuclease 8-like 3|endonuclease VIII-like 3|nei-like protein 3 20121230 -9606 55248 TMEM206 - C1orf75|RP11-384C4.5 HGNC:25593|Ensembl:ENSG00000065600|HPRD:07707|Vega:OTTHUMG00000036751 1 1q32.3 transmembrane protein 206 protein-coding TMEM206 transmembrane protein 206 O - 20121230 -9606 55249 YY1AP1 RP11-243J18.1 HCCA1|HCCA2|YAP|YY1AP HGNC:30935|MIM:607860|Ensembl:ENSG00000163374|HPRD:08485|Vega:OTTHUMG00000035437 1 1q22 YY1 associated protein 1 protein-coding YY1AP1 YY1 associated protein 1 O YY1-associated protein 1|hepatocellular carcinoma susceptibility protein|hepatocellular carcinoma-associated protein 2 20121230 -9606 55250 ELP2 - SHINC-2|STATIP1|StIP HGNC:18248|Ensembl:ENSG00000134759|HPRD:15443|Vega:OTTHUMG00000132589 18 18q12.2 elongator acetyltransferase complex subunit 2 protein-coding ELP2 elongator acetyltransferase complex subunit 2 O STAT3-interacting protein 1|elongation protein 2 homolog|elongator complex protein 2|elongator protein 2|signal transducer and activator of transcription 3 interacting protein 1|signal transducer and activator of transcription interacting protein 1|stIP1 20121230 -9606 55251 PCMTD2 RP11-476I15.3 C20orf36 HGNC:15882|Ensembl:ENSG00000203880|HPRD:12764|Vega:OTTHUMG00000033029 20 20q13.33 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 O protein-L-isoaspartate O-methyltransferase domain-containing protein 2 20121230 -9606 55252 ASXL2 - ASXH2 HGNC:23805|MIM:612991|Ensembl:ENSG00000143970|HPRD:10676|Vega:OTTHUMG00000152176 2 2p24.1 additional sex combs like 2 (Drosophila) protein-coding ASXL2 additional sex combs like 2 (Drosophila) O additional sex combs-like protein 2|polycomb group protein ASXH2|putative Polycomb group protein ASXL2 20121230 -9606 55253 TYW1 - RSAFD1|TYW1A|YPL207W HGNC:25598|MIM:611243|Ensembl:ENSG00000198874|HPRD:07711|Vega:OTTHUMG00000129723 7 7q11.21 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) protein-coding TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) O radical S-adenosyl methionine and flavodoxin domain-containing protein 1|radical S-adenosyl methionine and flavodoxin domains 1|tRNA wybutosine-synthesizing protein 1 homolog|tRNA-yW synthesizing protein 1 homolog A 20121230 -9606 55254 TMEM39A - - HGNC:25600|Ensembl:ENSG00000176142|HPRD:07713|Vega:OTTHUMG00000159361 3 3q13.33 transmembrane protein 39A protein-coding TMEM39A transmembrane protein 39A O - 20121230 -9606 55255 WDR41 MSTP048 - HGNC:25601|Ensembl:ENSG00000164253|HPRD:07714|Vega:OTTHUMG00000102169 5 5q13.3 WD repeat domain 41 protein-coding WDR41 WD repeat domain 41 O WD repeat-containing protein 41 20121230 -9606 55256 ADI1 HMFT1638 APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL HGNC:30576|MIM:613400|Ensembl:ENSG00000182551|HPRD:17607|Vega:OTTHUMG00000112441 2 2p25.3 acireductone dioxygenase 1 protein-coding ADI1 acireductone dioxygenase 1 O 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase|MT1-MMP cytoplasmic tail-binding protein-1|acireductone dioxygenase (Fe(2+)-requiring)|acireductone dioxygenase (Ni(2+)-requiring)|membrane-type 1 matrix metalloproteinase cytoplasmic tail binding protein-1|submergence induced protein 2|submergence-induced protein-like factor 20121230 -9606 55257 MRGBP - C20orf20|Eaf7|MRG15BP|URCC4 HGNC:15866|MIM:611157|Ensembl:ENSG00000101189|HPRD:16646|Vega:OTTHUMG00000032940 20 20q13.33 MRG/MORF4L binding protein protein-coding MRGBP MRG/MORF4L binding protein O MRG(MORF4-related gene)-binding protein|MRG-binding protein 20121230 -9606 55258 THNSL2 - SOFAT|THS2|TSH2 HGNC:25602|MIM:611261|Ensembl:ENSG00000144115|HPRD:07715|Vega:OTTHUMG00000130314 2 2p11.2 threonine synthase-like 2 (S. cerevisiae) protein-coding THNSL2 threonine synthase-like 2 (S. cerevisiae) O secreted osteoclastogenic factor of activated T cells|secreted osteoclastogenic factor of activated T-cells|threonine synthase-like 2 20121230 -9606 55259 CASC1 - LAS1|PPP1R54 HGNC:29599|Ensembl:ENSG00000118307|HPRD:16684|Vega:OTTHUMG00000150195 12 12p12.1 cancer susceptibility candidate 1 protein-coding CASC1 cancer susceptibility candidate 1 O cancer susceptibility candidate protein 1|lung adenoma susceptibility 1-like protein|protein phosphatase 1, regulatory subunit 54 20121230 -9606 55260 TMEM143 UNQ5922/PRO19813 - HGNC:25603|Ensembl:ENSG00000161558|HPRD:08556 19 19q13.33 transmembrane protein 143 protein-coding TMEM143 transmembrane protein 143 O - 20121230 -9606 55262 C7orf43 - - HGNC:25604|Ensembl:ENSG00000146826|HPRD:07716|Vega:OTTHUMG00000154862 7 7q22.1 chromosome 7 open reading frame 43 protein-coding C7orf43 chromosome 7 open reading frame 43 O uncharacterized protein C7orf43 20121230 -9606 55266 TMEM19 - - HGNC:25605|Ensembl:ENSG00000139291|HPRD:15530|Vega:OTTHUMG00000169558 12 12q21.1 transmembrane protein 19 protein-coding TMEM19 transmembrane protein 19 O - 20121230 -9606 55267 C22orf26 RP6-109B7.1 - HGNC:25606|Ensembl:ENSG00000182257|HPRD:07717|Vega:OTTHUMG00000150407 22 22q13.31 chromosome 22 open reading frame 26 protein-coding C22orf26 chromosome 22 open reading frame 26 O putative uncharacterized protein C22orf26 20121230 -9606 55268 ECHDC2 - - HGNC:23408|Ensembl:ENSG00000121310|HPRD:07718|Vega:OTTHUMG00000008927 1 1p32.3 enoyl CoA hydratase domain containing 2 protein-coding ECHDC2 enoyl CoA hydratase domain containing 2 O enoyl Coenzyme A hydratase domain containing 2|enoyl-CoA hydratase domain-containing protein 2, mitochondrial 20121230 -9606 55269 PSPC1 RP11-523H24.2 PSP1 HGNC:20320|MIM:612408|Ensembl:ENSG00000121390|HPRD:10172|Vega:OTTHUMG00000016502 13 13q12.11 paraspeckle component 1 protein-coding PSPC1 paraspeckle component 1 O paraspeckle protein 1 20121230 -9606 55270 NUDT15 - MTH2|RP11-90M2.1 HGNC:23063|Ensembl:ENSG00000136159|HPRD:14848|Vega:OTTHUMG00000016890 13 13q14.2 nudix (nucleoside diphosphate linked moiety X)-type motif 15 protein-coding NUDT15 nudix (nucleoside diphosphate linked moiety X)-type motif 15 O 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15|8-oxo-dGTPase NUDT15|A730068G11Rik|mutT homolog 2|nucleoside diphosphate-linked moiety X motif 15|nudix motif 15|nudix-type motif 15|probable 7,8-dihydro-8-oxoguanine triphosphatase NUDT15|probable 8-oxo-dGTP diphosphatase NUDT15 20121230 -9606 55272 IMP3 - BRMS2|C15orf12|MRPS4 HGNC:14497|MIM:612980|HPRD:12664 15 15q24 IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) protein-coding IMP3 IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) O U3 small nucleolar ribonucleoprotein protein IMP3|U3 snoRNP protein 3 homolog|U3 snoRNP protein IMP3 20121230 -9606 55273 TMEM100 - - HGNC:25607|Ensembl:ENSG00000166292|HPRD:07719|Vega:OTTHUMG00000177858 17 17q22 transmembrane protein 100 protein-coding TMEM100 transmembrane protein 100 O - 20121230 -9606 55274 PHF10 RP11-160E12.5 BAF45A|XAP135 HGNC:18250|MIM:613069|Ensembl:ENSG00000130024|HPRD:11428|Vega:OTTHUMG00000016058 6 6q27|Xq28 PHD finger protein 10 protein-coding PHF10 PHD finger protein 10 O BRG1-associated factor 45a|BRG1-associated factor, 45-KD, A|PHD zinc finger protein XAP135 20121230 -9606 55275 VPS53 PP13624 HCCS1|hVps53L|pp13624 HGNC:25608|Ensembl:ENSG00000141252|HPRD:07720|Vega:OTTHUMG00000177441 17 17p13.3 vacuolar protein sorting 53 homolog (S. cerevisiae) protein-coding VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) O vacuolar protein sorting-associated protein 53 homolog 20121230 -9606 55276 PGM2 MSTP006 - HGNC:8906|MIM:172000|Ensembl:ENSG00000169299|HPRD:11761|Vega:OTTHUMG00000097813 4 4p14 phosphoglucomutase 2 protein-coding PGM2 phosphoglucomutase 2 O PGM 2|glucose phosphomutase 2|phosphodeoxyribomutase|phosphoglucomutase-2 20121230 -9606 55277 FGGY RP11-242B9.1 - HGNC:25610|MIM:611370|Ensembl:ENSG00000172456|HPRD:07721|Vega:OTTHUMG00000008424 1 1p32.1 FGGY carbohydrate kinase domain containing protein-coding FGGY FGGY carbohydrate kinase domain containing O FGGY carbohydrate kinase domain-containing protein 20121230 -9606 55278 QRSL1 - GatA HGNC:21020|Ensembl:ENSG00000130348|HPRD:15199|Vega:OTTHUMG00000015301 6 6q21 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 protein-coding QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 O glu-AdT subunit A|glutaminyl-tRNA synthase-like protein 1|glutamyl-tRNA(Gln) amidotransferase subunit A homolog|glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial 20121230 -9606 55279 ZNF654 - - HGNC:25612|Ensembl:ENSG00000175105|HPRD:07722|Vega:OTTHUMG00000159097 3 3p11.1 zinc finger protein 654 protein-coding ZNF654 zinc finger protein 654 O melanoma-associated antigen 20121230 -9606 55280 CWF19L1 RP11-316M21.3 - HGNC:25613|Ensembl:ENSG00000095485|HPRD:13101|Vega:OTTHUMG00000018901 10 10q24.31 CWF19-like 1, cell cycle control (S. pombe) protein-coding CWF19L1 CWF19-like 1, cell cycle control (S. pombe) O CWF19-like protein 1 20121230 -9606 55281 TMEM140 - - HGNC:21870|Ensembl:ENSG00000146859|HPRD:07723|Vega:OTTHUMG00000155413 7 7q33 transmembrane protein 140 protein-coding TMEM140 transmembrane protein 140 O - 20121230 -9606 55282 LRRC36 - RORBP70|XLHSRF2 HGNC:25615|Ensembl:ENSG00000159708|HPRD:08558|Vega:OTTHUMG00000173030 16 16q22.1 leucine rich repeat containing 36 protein-coding LRRC36 leucine rich repeat containing 36 O ROR gamma binding protein 70|ROR gamma-binding protein 70|heat shock regulated 2|leucine-rich repeat-containing protein 36 20121230 -9606 55283 MCOLN3 - TRP-ML3|TRPML3 HGNC:13358|MIM:607400|Ensembl:ENSG00000055732|HPRD:09585|Vega:OTTHUMG00000009955 1 1p22.3 mucolipin 3 protein-coding MCOLN3 mucolipin 3 O mucolipin-3 20121230 -9606 55284 UBE2W - UBC-16|UBC16 HGNC:25616|MIM:614277|Ensembl:ENSG00000104343|HPRD:07724|Vega:OTTHUMG00000164517 8 8q21.11 ubiquitin-conjugating enzyme E2W (putative) protein-coding UBE2W ubiquitin-conjugating enzyme E2W (putative) O ubiquitin carrier protein W|ubiquitin-conjugating enzyme 16|ubiquitin-conjugating enzyme 2W|ubiquitin-conjugating enzyme E2 W|ubiquitin-protein ligase W 20121230 -9606 55285 RBM41 RP13-383K5.1 - HGNC:25617|Ensembl:ENSG00000089682|HPRD:06515|Vega:OTTHUMG00000022156 X Xq22.3 RNA binding motif protein 41 protein-coding RBM41 RNA binding motif protein 41 O RNA-binding motif protein 41|RNA-binding protein 41 20121230 -9606 55286 C4orf19 - - HGNC:25618|Ensembl:ENSG00000154274|HPRD:07725|Vega:OTTHUMG00000128580 4 4p14 chromosome 4 open reading frame 19 protein-coding C4orf19 chromosome 4 open reading frame 19 O uncharacterized protein C4orf19 20121230 -9606 55287 TMEM40 - - HGNC:25620|Ensembl:ENSG00000088726|HPRD:08559|Vega:OTTHUMG00000129801 3 3p25.2 transmembrane protein 40 protein-coding TMEM40 transmembrane protein 40 O - 20121230 -9606 55288 RHOT1 - ARHT1|MIRO-1|MIRO1 HGNC:21168|MIM:613888|Ensembl:ENSG00000126858|HPRD:15247|Vega:OTTHUMG00000179564 17 17q11.2 ras homolog family member T1 protein-coding RHOT1 ras homolog family member T1 O hMiro-1|mitochondrial Rho (MIRO) GTPase 1|mitochondrial Rho 1|mitochondrial Rho GTPase 1|rac-GTP binding protein-like protein|rac-GTP-binding protein-like protein|ras homolog gene family, member T1 20121230 -9606 55289 ACOXL - - HGNC:25621|Ensembl:ENSG00000153093|HPRD:12418|Vega:OTTHUMG00000131257 2 2q13 acyl-CoA oxidase-like protein-coding ACOXL acyl-CoA oxidase-like O acyl-CoA oxidase-like protein|acyl-coenzyme A oxidase-like protein 20121230 -9606 55290 BRF2 PRO1470 BRFU|TFIIIB50 HGNC:17298|MIM:607013|Ensembl:ENSG00000104221|HPRD:06115|Vega:OTTHUMG00000164025 8 8p11.23 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like protein-coding BRF2 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like O B-related factor 2|BRF-2|RNA polymerase III transcription initiation factor BRFU|hBRFU|hTFIIIB50|transcription factor IIB- related factor, TFIIIB50|transcription factor IIIB 50 kDa subunit 20121230 -9606 55291 PPP6R3 - C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 HGNC:1173|MIM:610879|Ensembl:ENSG00000110075|HPRD:10703|Vega:OTTHUMG00000167596 11 11q13 protein phosphatase 6, regulatory subunit 3 protein-coding PPP6R3 protein phosphatase 6, regulatory subunit 3 O SAPS domain family, member 3|serine/threonine-protein phosphatase 6 regulatory subunit 3|sporulation-induced transcript 4-associated protein SAPL 20121230 -9606 55293 UEVLD - ATTP|UEV3 HGNC:30866|MIM:610985|Ensembl:ENSG00000151116|HPRD:15608|Vega:OTTHUMG00000167729 11 11p15.1 UEV and lactate/malate dehyrogenase domains protein-coding UEVLD UEV and lactate/malate dehyrogenase domains O EV and lactate/malate dehydrogenase domain-containing protein|UEV-3|signaling molecule ATTP|ubiquitin-conjugating enzyme E2 variant 3 20121230 -9606 55294 FBXW7 - AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 HGNC:16712|MIM:606278|Ensembl:ENSG00000109670|HPRD:05888 4 4q31.3 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase protein-coding FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase O F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)|F-box protein FBW7|F-box protein FBX30|F-box protein SEL-10|F-box/WD repeat-containing protein 7|archipelago|homolog of C elegans sel-10 20121230 -9606 55295 KLHL26 - - HGNC:25623|Ensembl:ENSG00000167487|HPRD:07728 19 19p13.11 kelch-like 26 (Drosophila) protein-coding KLHL26 kelch-like 26 (Drosophila) O kelch-like protein 26 20121230 -9606 55296 TBC1D19 - - HGNC:25624|Ensembl:ENSG00000109680|HPRD:07730|Vega:OTTHUMG00000097797 4 4p15.2 TBC1 domain family, member 19 protein-coding TBC1D19 TBC1 domain family, member 19 O TBC1 domain family member 19 20121230 -9606 55297 CCDC91 HSD8 p56 HGNC:24855|Ensembl:ENSG00000123106|HPRD:16905|Vega:OTTHUMG00000169141 12 12p11.22 coiled-coil domain containing 91 protein-coding CCDC91 coiled-coil domain containing 91 O GGA binding partner|GGA-binding partner|coiled-coil domain-containing protein 91|p56 accessory protein 20121230 -9606 55298 RNF121 - - HGNC:21070|Ensembl:ENSG00000137522|HPRD:11497|Vega:OTTHUMG00000157023 11 11q13.4 ring finger protein 121 protein-coding RNF121 ring finger protein 121 O RING finger protein 121 20121230 -9606 55299 BRIX1 - BRIX|BXDC2 HGNC:24170|Ensembl:ENSG00000113460|HPRD:16563|Vega:OTTHUMG00000162021 5 5p13.2 BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) protein-coding BRIX1 BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) O brix domain containing 2|brix domain-containing protein 2|ribosome biogenesis protein BRX1 homolog 20121230 -9606 55300 PI4K2B - PI4KIIB|PIK42B HGNC:18215|MIM:612101|Ensembl:ENSG00000038210|HPRD:15132|Vega:OTTHUMG00000128564 4 4p15.2 phosphatidylinositol 4-kinase type 2 beta protein-coding PI4K2B phosphatidylinositol 4-kinase type 2 beta O PI4KII-BETA|phosphatidylinositol 4-kinase type 2-beta|phosphatidylinositol 4-kinase type II-beta|phosphatidylinositol 4-kinase type-II beta 20121230 -9606 55301 OLAH RP11-455B2.1 AURA1|SAST|THEDC1 HGNC:25625|Ensembl:ENSG00000152463|HPRD:07731|Vega:OTTHUMG00000017724 10 10p13 oleoyl-ACP hydrolase protein-coding OLAH oleoyl-ACP hydrolase O S-acyl fatty acid synthase thioesterase, medium chain|augmented in rheumatoid arthritis 1|thioesterase II|thioesterase domain containing 1|thioesterase domain-containing protein 1 20121230 -9606 55303 GIMAP4 MSTP062 IAN-1|IAN1|IMAP4 HGNC:21872|MIM:608087|Ensembl:ENSG00000133574|HPRD:16281|Vega:OTTHUMG00000157475 7 7q36.1 GTPase, IMAP family member 4 protein-coding GIMAP4 GTPase, IMAP family member 4 O GTPase IMAP family member 4|human immune associated nucleotide 1|immunity associated protein 4|immunity-associated nucleotide 1 protein|immunity-associated protein 4 20121230 -9606 55304 SPTLC3 RP5-1077I2.1 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b HGNC:16253|MIM:611120|Ensembl:ENSG00000172296|HPRD:12765|Vega:OTTHUMG00000031899 20 20p12.1 serine palmitoyltransferase, long chain base subunit 3 protein-coding SPTLC3 serine palmitoyltransferase, long chain base subunit 3 O LCB 3|SPT 3|long chain base biosynthesis protein 2b|long chain base biosynthesis protein 3|serine palmitoyltransferase 3|serine palmitoyltransferase, long chain base subunit 2-like (aminotransferase 2)|serine-palmitoyl-CoA transferase 3 20121230 -9606 55308 DDX19A - DDX19-DDX19L|DDX19L HGNC:25628|Ensembl:ENSG00000168872|HPRD:07732|HPRD:18679|Vega:OTTHUMG00000137579 16 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A protein-coding DDX19A DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A O ATP-dependent RNA helicase DDX19A|DDX19-like protein|DEAD (Asp-Glu-Ala-As) box polypeptide 19A|DEAD box protein 19A|RNA helicase 20121230 -9606 55311 ZNF444 - EZF-2|EZF2|ZSCAN17 HGNC:16052|MIM:607874|Ensembl:ENSG00000167685|HPRD:08488|Vega:OTTHUMG00000181761 19 19q13.43 zinc finger protein 444 protein-coding ZNF444 zinc finger protein 444 O endothelial zinc finger protein 2|zinc finger and SCAN domain-containing protein 17 20121230 -9606 55312 RFK RP11-422N19.2 RIFK HGNC:30324|MIM:613010|Ensembl:ENSG00000135002|HPRD:17969|Vega:OTTHUMG00000020040 9 9q21.13 riboflavin kinase protein-coding RFK riboflavin kinase O 0610038L10Rik|ATP:riboflavin 5'-phosphotransferase|flavokinase 20121230 -9606 55313 CPPED1 - CSTP1 HGNC:25632|Ensembl:ENSG00000103381|HPRD:07735|Vega:OTTHUMG00000167711 16 16p13.12 calcineurin-like phosphoesterase domain containing 1 protein-coding CPPED1 calcineurin-like phosphoesterase domain containing 1 O calcineurin-like phosphoesterase domain-containing protein 1|complete S transactivated protein 1|complete S-transactivated protein 1 20121230 -9606 55314 TMEM144 - - HGNC:25633|Ensembl:ENSG00000164124|HPRD:07736|Vega:OTTHUMG00000162013 4 4q32.1 transmembrane protein 144 protein-coding TMEM144 transmembrane protein 144 O - 20121230 -9606 55315 SLC29A3 UNQ717/PRO1380 ENT3|HCLAP|HJCD|PHID HGNC:23096|MIM:612373|Ensembl:ENSG00000198246|HPRD:11570|Vega:OTTHUMG00000018424 10 10q22.1 solute carrier family 29 (nucleoside transporters), member 3 protein-coding SLC29A3 solute carrier family 29 (nucleoside transporters), member 3 O equilibrative nucleoside transporter 3 20121230 -9606 55316 RSAD1 - - HGNC:25634|Ensembl:ENSG00000136444|HPRD:07737|Vega:OTTHUMG00000162126 17 17q21.33 radical S-adenosyl methionine domain containing 1 protein-coding RSAD1 radical S-adenosyl methionine domain containing 1 O oxygen-independent coproporphyrinogen-III oxidase-like protein RSAD1|radical S-adenosyl methionine domain-containing protein 1, mitochondrial 20121230 -9606 55317 AP5S1 RP5-1009E24.7 C20orf29 HGNC:15875|MIM:614824|Ensembl:ENSG00000125843|HPRD:16649|Vega:OTTHUMG00000031760 20 20p13 adaptor-related protein complex 5, sigma 1 subunit protein-coding AP5S1 adaptor-related protein complex 5, sigma 1 subunit O AP-5 complex subunit sigma-1|adapter-related protein complex 5 sigma subunit|protein C20orf29|sigma5 20121230 -9606 55319 TMA16 - C4orf43 HGNC:25638|Ensembl:ENSG00000198498|HPRD:07739|Vega:OTTHUMG00000161528 4 4q32.2 translation machinery associated 16 homolog (S. cerevisiae) protein-coding TMA16 translation machinery associated 16 homolog (S. cerevisiae) O UPF0534 protein C4orf43|translation machinery-associated protein 16 20121230 -9606 55320 MIS18BP1 - C14orf106|HSA242977|KNL2|M18BP1 HGNC:20190|Ensembl:ENSG00000129534|HPRD:12629|Vega:OTTHUMG00000140266 14 14q21.2 MIS18 binding protein 1 protein-coding MIS18BP1 MIS18 binding protein 1 O P243|hsKNL-2|kinetochore null 2 homolog|kinetochore-associated protein KNL-2 homolog|mis18-binding protein 1|putative protein p243 which interacts with transcription factor Sp1 20121230 -9606 55321 TMEM74B RP4-545L17.8 C20orf46 HGNC:15893|Ensembl:ENSG00000125895|HPRD:12772|Vega:OTTHUMG00000031655 20 20p13 transmembrane protein 74B protein-coding TMEM74B transmembrane protein 74B O transmembrane protein C20orf46 20121230 -9606 55322 C5orf22 - - HGNC:25639|Ensembl:ENSG00000082213|HPRD:07740|Vega:OTTHUMG00000131067 5 5p13.3 chromosome 5 open reading frame 22 protein-coding C5orf22 chromosome 5 open reading frame 22 O UPF0489 protein C5orf22 20121230 -9606 55323 LARP6 - ACHN HGNC:24012|MIM:611300|Ensembl:ENSG00000166173|HPRD:10966|Vega:OTTHUMG00000172179 15 15q23 La ribonucleoprotein domain family, member 6 protein-coding LARP6 La ribonucleoprotein domain family, member 6 O acheron|death-associated LA motif protein|la-related protein 6 20121230 -9606 55324 ABCF3 - EST201864 HGNC:72|Ensembl:ENSG00000161204|HPRD:12404|Vega:OTTHUMG00000156824 3 3q27.1 ATP-binding cassette, sub-family F (GCN20), member 3 protein-coding ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3 O ATP-binding cassette sub-family F member 3 20121230 -9606 55325 UFSP2 - C4orf20 HGNC:25640|MIM:611482|Ensembl:ENSG00000109775|HPRD:07741|Vega:OTTHUMG00000160441 4 4q35.1 UFM1-specific peptidase 2 protein-coding UFSP2 UFM1-specific peptidase 2 O ufm1-specific protease 2 20121230 -9606 55326 AGPAT5 - 1AGPAT5|LPAATE HGNC:20886|MIM:614796|Ensembl:ENSG00000155189|HPRD:12438|Vega:OTTHUMG00000163656 8 8p23.1 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) protein-coding AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) O 1-AGP acyltransferase 5|1-AGPAT 5|1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon|lysophosphatidic acid acyltransferase epsilon 20121230 -9606 55327 LIN7C - LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3 HGNC:17789|MIM:612332|Ensembl:ENSG00000148943|HPRD:17279|Vega:OTTHUMG00000166193 11 11p14 lin-7 homolog C (C. elegans) protein-coding LIN7C lin-7 homolog C (C. elegans) O LIN-7 protein 3|mammalian lin-seven protein 3|protein lin-7 homolog C|veli-3|vertebrate lin-7 homolog 3 20121230 -9606 55328 RNLS - C10orf59|RENALASE HGNC:25641|MIM:609360|Ensembl:ENSG00000184719|HPRD:07742|Vega:OTTHUMG00000018692 10 10q23.31 renalase, FAD-dependent amine oxidase protein-coding RNLS renalase, FAD-dependent amine oxidase O MAO-C|monoamine oxidase-C|renalase 20121230 -9606 55329 MNS1 - - HGNC:29636|MIM:610766|Ensembl:ENSG00000138587|HPRD:10967|Vega:OTTHUMG00000132034 15 15q21.3 meiosis-specific nuclear structural 1 protein-coding MNS1 meiosis-specific nuclear structural 1 O meiosis-specific nuclear structural protein 1 20121230 -9606 55330 BLOC1S4 - BCAS4L|CNO HGNC:24206|MIM:605695|Ensembl:ENSG00000186222|HPRD:12035|Vega:OTTHUMG00000125510 4 4p16.1 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino protein-coding BLOC1S4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino O cappuccino homolog|protein cappuccino homolog 20121230 -9606 55331 ACER3 - APHC|PHCA HGNC:16066|Ensembl:ENSG00000078124|HPRD:17844|Vega:OTTHUMG00000165225 11 11q13.5 alkaline ceramidase 3 protein-coding ACER3 alkaline ceramidase 3 O alkCDase 3|alkaline CDase 3|alkaline dihydroceramidase SB89|alkaline phytoceramidase|phytoceramidase, alkaline 20121230 -9606 55332 DRAM1 - DRAM HGNC:25645|MIM:610776|Ensembl:ENSG00000136048|HPRD:07743|Vega:OTTHUMG00000170447 12 12q23.2 DNA-damage regulated autophagy modulator 1 protein-coding DRAM1 DNA-damage regulated autophagy modulator 1 O DNA damage-regulated autophagy modulator protein 1|damage-regulated autophagy modulator 20121230 -9606 55333 SYNJ2BP - ARIP2|OMP25 HGNC:18955|MIM:609411|Ensembl:ENSG00000213463|HPRD:15455|Vega:OTTHUMG00000171240 14 14q24.2 synaptojanin 2 binding protein protein-coding SYNJ2BP synaptojanin 2 binding protein O activin receptor interacting protein 5|mitochondrial outer membrane protein 25|synaptojanin-2-binding protein 20121230 -9606 55334 SLC39A9 UNQ714/PRO1377 ZIP-9|ZIP9 HGNC:20182|Ensembl:ENSG00000029364|HPRD:15387|Vega:OTTHUMG00000171232 14 14q24.1 solute carrier family 39 (zinc transporter), member 9 protein-coding SLC39A9 solute carrier family 39 (zinc transporter), member 9 O zinc transporter SLC39A9|zinc transporter ZIP9|zrt- and Irt-like protein 9 20121230 -9606 55335 NIPSNAP3B - NIPSNAP3 HGNC:23641|MIM:608872|Ensembl:ENSG00000165028|HPRD:16400|Vega:OTTHUMG00000020414 9 9q31.1 nipsnap homolog 3B (C. elegans) protein-coding NIPSNAP3B nipsnap homolog 3B (C. elegans) O SNAP1|protein NipSnap homolog 3B 20121230 -9606 55336 FBXL8 - FBL8 HGNC:17875|MIM:609077|Ensembl:ENSG00000135722|HPRD:16430|Vega:OTTHUMG00000137514 16 16q22.1 F-box and leucine-rich repeat protein 8 protein-coding FBXL8 F-box and leucine-rich repeat protein 8 O F-box protein FBL8|F-box/LRR-repeat protein 8 20121230 -9606 55337 C19orf66 - - HGNC:25649|Ensembl:ENSG00000130813|HPRD:07747|Vega:OTTHUMG00000180393 19 19p13.2 chromosome 19 open reading frame 66 protein-coding C19orf66 chromosome 19 open reading frame 66 O UPF0515 protein C19orf66 20121230 -9606 55338 FLJ11292 - - HPRD:13345 5 5q14.3 uncharacterized protein FLJ11292 other - - - - 20120909 -9606 55339 WDR33 - NET14|WDC146 HGNC:25651|Ensembl:ENSG00000136709|HPRD:11680|Vega:OTTHUMG00000131534 2 2q14.3 WD repeat domain 33 protein-coding WDR33 WD repeat domain 33 O WD repeat-containing protein 33|WD repeat-containing protein WDC146|pre-mRNA 3' end processing protein WDR33 20121230 -9606 55340 GIMAP5 - HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD HGNC:18005|MIM:608086|Ensembl:ENSG00000196329|HPRD:16280|Vega:OTTHUMG00000157542 7 7q36.1 GTPase, IMAP family member 5 protein-coding GIMAP5 GTPase, IMAP family member 5 O GTPase IMAP family member 5|immune associated nucleotide 4 like 1|immunity associated protein 3|immunity-associated nucleotide 5 protein|inhibitor of radiation- and OA-induced apoptosis, Irod/Ian5 20121230 -9606 55341 LSG1 - - HGNC:25652|MIM:610780|Ensembl:ENSG00000041802|HPRD:07748|Vega:OTTHUMG00000156021 3 3q29 large subunit GTPase 1 homolog (S. cerevisiae) protein-coding LSG1 large subunit GTPase 1 homolog (S. cerevisiae) O hLsg1|large subunit GTPase 1 homolog 20121230 -9606 55342 STRBP - ILF3L|SPNR|p74 HGNC:16462|MIM:611138|Ensembl:ENSG00000165209|HPRD:10257|Vega:OTTHUMG00000020636 9 9q33.3 spermatid perinuclear RNA binding protein protein-coding STRBP spermatid perinuclear RNA binding protein O spermatid perinuclear RNA-binding protein 20121230 -9606 55343 SLC35C1 - CDG2C|FUCT1 HGNC:20197|MIM:605881|Ensembl:ENSG00000181830|HPRD:09324|Vega:OTTHUMG00000166519 11 11p11.2 solute carrier family 35, member C1 protein-coding SLC35C1 solute carrier family 35, member C1 O GDP-fucose transporter 1 20121230 -9606 55344 PLCXD1 LL0XNC01-136G2.1 - HGNC:23148|HPRD:06516 X|Y Xp22.33; Yp11.32 phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding PLCXD1 phosphatidylinositol-specific phospholipase C, X domain containing 1 O PI-PLC X domain-containing protein 1 20121230 -9606 55345 C4orf21 hCG_21296 - HGNC:25654|Ensembl:ENSG00000138658|HPRD:08562|Vega:OTTHUMG00000132908 4 4q25 chromosome 4 open reading frame 21 protein-coding C4orf21 chromosome 4 open reading frame 21 O prematurely terminated mRNA decay factor-like 20121230 -9606 55346 TCP11L1 - dJ85M6.3 HGNC:25655|Ensembl:ENSG00000176148|HPRD:07750|Vega:OTTHUMG00000165303 11 11p13 t-complex 11, testis-specific-like 1 protein-coding TCP11L1 t-complex 11, testis-specific-like 1 O T-complex protein 11-like protein 1|t-complex 11-like 1 20121230 -9606 55347 ABHD10 - - HGNC:25656|Ensembl:ENSG00000144827|HPRD:07751|Vega:OTTHUMG00000159280 3 3q13.2 abhydrolase domain containing 10 protein-coding ABHD10 abhydrolase domain containing 10 O abhydrolase domain-containing protein 10, mitochondrial 20121230 -9606 55349 CHDH - - HGNC:24288|Ensembl:ENSG00000016391|HPRD:13050|Vega:OTTHUMG00000158281 3 3p21.1 choline dehydrogenase protein-coding CHDH choline dehydrogenase O CDH|CHD|choline dehydrogenase, mitochondrial 20121230 -9606 55350 VNN3 - HSA238982 HGNC:16431|MIM:606592|HPRD:09420 6 6q23.2 vanin 3 pseudo VNN3 vanin 3 O - 20121230 -9606 55351 STK32B UNQ3003/PRO9744 HSA250839|STK32|STKG6|YANK2 HGNC:14217|Ensembl:ENSG00000152953|HPRD:15446|Vega:OTTHUMG00000090423 4 4p16.2 serine/threonine kinase 32B protein-coding STK32B serine/threonine kinase 32B O gene for serine/threonine protein kinase|serine/threonine-protein kinase 32B 20121230 -9606 55352 COPRS - C17orf79|COPR5|HSA272196|TTP1 HGNC:28848|Ensembl:ENSG00000172301|HPRD:13675|Vega:OTTHUMG00000132812 17 17q11.2 coordinator of PRMT5, differentiation stimulator protein-coding COPRS coordinator of PRMT5, differentiation stimulator O cooperator of PRMT5 20121230 -9606 55353 LAPTM4B PSEC0001 LAPTM4beta|LC27 HGNC:13646|MIM:613296|Ensembl:ENSG00000104341|Vega:OTTHUMG00000164740 8 8q22.1 lysosomal protein transmembrane 4 beta protein-coding LAPTM4B lysosomal protein transmembrane 4 beta O lysosomal associated protein transmembrane 4 beta|lysosomal-associated transmembrane protein 4B|lysosome-associated transmembrane protein 4-beta 20121230 -9606 55354 ORF1 - - - 18 18q23 uncharacterized protein, clone pT-Adv JuaX22 unknown - - - - 20120710 -9606 55355 HJURP - FAKTS|URLC9|hFLEG1 HGNC:25444|MIM:612667|Ensembl:ENSG00000123485|Vega:OTTHUMG00000059125 2 2q37.1 Holliday junction recognition protein protein-coding HJURP Holliday junction recognition protein O 14-3-3-associated AKT substrate|fetal liver expressing gene 1|fetal liver-expressing gene 1 protein|up-regulated in lung cancer 9 20121230 -9606 55356 SLC22A15 UNQ9429/PRO34686 FLIPT1|PRO34686 HGNC:20301|MIM:608275|Ensembl:ENSG00000163393|Vega:OTTHUMG00000012008 1 1p13.1 solute carrier family 22, member 15 protein-coding SLC22A15 solute carrier family 22, member 15 O flipt 1|fly-like putative organic ion transporter 1|fly-like putative transporter 1|solute carrier family 22 (organic cation transporter), member 15|solute carrier family 22 member 15|trans-like protein 20121230 -9606 55357 TBC1D2 RP11-404F11.2 PARIS-1|PARIS1|TBC1D2A HGNC:18026|MIM:609871|Ensembl:ENSG00000095383|Vega:OTTHUMG00000020343 9 9q22.33 TBC1 domain family, member 2 protein-coding TBC1D2 TBC1 domain family, member 2 O TBC1 domain family member 2A|TBC1 domain family, member 2A|armus|prostate antigen recognized and identified by SEREX 1 20121230 -9606 55359 STYK1 - NOK|SuRTK106 HGNC:18889|MIM:611433|Ensembl:ENSG00000060140|HPRD:15447|Vega:OTTHUMG00000168408 12 12p13.2 serine/threonine/tyrosine kinase 1 protein-coding STYK1 serine/threonine/tyrosine kinase 1 O novel oncogene with kinase domain|protein PK-unique|tyrosine-protein kinase STYK1 20121230 -9606 55361 PI4K2A - PI4KII|PIK42A|RP11-548K23.6 HGNC:30031|MIM:609763|Ensembl:ENSG00000155252|Ensembl:ENSG00000249967|HPRD:11431|Vega:OTTHUMG00000018863|Vega:OTTHUMG00000162272 10 10q24 phosphatidylinositol 4-kinase type 2 alpha protein-coding PI4K2A phosphatidylinositol 4-kinase type 2 alpha O phosphatidylinositol 4-kinase type 2-alpha|phosphatidylinositol 4-kinase type II (PI4KII)|phosphatidylinositol 4-kinase type II-alpha 20121230 -9606 55362 TMEM63B - C6orf110|RP3-421H19.2 HGNC:17735|Ensembl:ENSG00000137216|HPRD:16656|Vega:OTTHUMG00000014757 6 6p21.1 transmembrane protein 63B protein-coding TMEM63B transmembrane protein 63B O - 20121230 -9606 55363 HEMGN PRO1037 EDAG|EDAG-1 HGNC:17509|MIM:610715|Ensembl:ENSG00000136929|HPRD:17100|Vega:OTTHUMG00000020336 9 9q22.33 hemogen protein-coding HEMGN hemogen O erythroid differentiation-associated gene protein|hemopoietic gene protein|negative differentiation regulator protein 20121230 -9606 55364 IMPACT - RWDD5 HGNC:20387|Ensembl:ENSG00000154059|HPRD:13739|Vega:OTTHUMG00000131943 18 18q11.2-q12.1 impact RWD domain protein protein-coding IMPACT impact RWD domain protein O Impact homolog|RWD domain containing 5|imprinted and ancient gene protein homolog|protein IMPACT 20121230 -9606 55365 TMEM176A - GS188|HCA112 HGNC:24930|MIM:610334|Ensembl:ENSG00000002933|HPRD:13635|Vega:OTTHUMG00000158114 7 7q36.1 transmembrane protein 176A protein-coding TMEM176A transmembrane protein 176A O hepatocellular carcinoma-associated antigen 112|likley ortholog of mouse GS188 20121230 -9606 55366 LGR4 - GPR48 HGNC:13299|MIM:606666|Ensembl:ENSG00000205213|HPRD:05978|Vega:OTTHUMG00000133508 11 11p14-p13 leucine-rich repeat containing G protein-coupled receptor 4 protein-coding LGR4 leucine-rich repeat containing G protein-coupled receptor 4 O G protein-coupled receptor 48|leucine-rich repeat-containing G-protein coupled receptor 4 20121230 -9606 55367 PIDD - LRDD HGNC:16491|MIM:605247|Ensembl:ENSG00000177595|HPRD:11284|Vega:OTTHUMG00000133306 11 11p15.5 p53-induced death domain protein protein-coding PIDD p53-induced death domain protein O leucine-rich repeat and death domain-containing protein|leucine-rich repeats and death domain containing|p53-induced protein with a death domain 20121230 -9606 55370 PPP4R1L RP11-196N14.1 C20orf192|PRO1085 HGNC:15755|HPRD:17895 20 20q13.32 protein phosphatase 4, regulatory subunit 1-like pseudo PPP4R1L protein phosphatase 4, regulatory subunit 1-like O - 20121230 -9606 55374 TMCO6 PRO1580 - HGNC:28814|Ensembl:ENSG00000113119|HPRD:15177|Vega:OTTHUMG00000129497 5 5q31.3 transmembrane and coiled-coil domains 6 protein-coding TMCO6 transmembrane and coiled-coil domains 6 O transmembrane and coiled-coil domain-containing protein 6 20121230 -9606 55379 LRRC59 PRO1855 p34 HGNC:28817|MIM:614854|Ensembl:ENSG00000108829|HPRD:15181|Vega:OTTHUMG00000162079 17 17q21.33 leucine rich repeat containing 59 protein-coding LRRC59 leucine rich repeat containing 59 O leucine-rich repeat-containing protein 59 20121230 -9606 55380 EPS15P1 PRO1866 EPS15L2 HGNC:18166 7 7p12.3 epidermal growth factor receptor pathway substrate 15 pseudogene 1 pseudo EPS15P1 epidermal growth factor receptor pathway substrate 15 pseudogene 1 O - 20121230 -9606 55384 MEG3 - FP504|GTL2|LINC00023|NCRNA00023|PRO0518|PRO2160|prebp1 HGNC:14575|MIM:605636 14 14q32 maternally expressed 3 (non-protein coding) miscRNA MEG3 maternally expressed 3 (non-protein coding) O - 20121230 -9606 55387 PRO2214 - - - 5 5q12.2 uncharacterized protein PRO2214 unknown - - - - 20121120 -9606 55388 MCM10 PRO2249 CNA43|DNA43 HGNC:18043|MIM:609357|Ensembl:ENSG00000065328|HPRD:11297|Vega:OTTHUMG00000017694 10 10p13 minichromosome maintenance complex component 10 protein-coding MCM10 minichromosome maintenance complex component 10 O MCM10 minichromosome maintenance deficient 10|homolog of yeast MCM10|hsMCM10|protein MCM10 homolog 20121230 -9606 55389 AKIRIN2-AS1 - NCRNA00120|PRO2266 HGNC:28822 6 6q15 AKIRIN2 antisense RNA 1 miscRNA AKIRIN2-AS1 AKIRIN2 antisense RNA 1 O - 20121021 -9606 55390 PRO2268 - - MIM:614354 12 12q14.3 uncharacterized protein PRO2268 protein-coding - - - uncharacterized protein LOC55390 20120710 -9606 55410 NCRNA00185 - CYorf14|PRO2834 HGNC:18566 Y Yq11.222 non-protein coding RNA 185 miscRNA NCRNA00185 non-protein coding RNA 185 O - 20121230 -9606 55412 PRO2949 - - - 8 8q23.1 uncharacterized protein PRO2949 unknown - - - - 20121006 -9606 55415 PRO2964 - - - 2 2q32.1 uncharacterized protein PRO2964 unknown - - - - 20120710 -9606 55421 C17orf85 - ELG|HSA277841 HGNC:24612|Ensembl:ENSG00000074356|HPRD:17116|Vega:OTTHUMG00000177672 17 17p13.2 chromosome 17 open reading frame 85 protein-coding C17orf85 chromosome 17 open reading frame 85 O uncharacterized protein C17orf85 20121230 -9606 55422 ZNF331 - RITA|ZNF361|ZNF463 HGNC:15489|MIM:606043|Ensembl:ENSG00000130844|HPRD:05827|Vega:OTTHUMG00000163019 19 19q13.42 zinc finger protein 331 protein-coding ZNF331 zinc finger protein 331 O C2H2-like zinc finger protein rearranged in thyroid adenomas|KRAB zinc finger protein|zinc finger protein 361|zinc finger protein 463 20121230 -9606 55423 SIRPG RP11-77C3.2 CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 HGNC:15757|MIM:605466|Ensembl:ENSG00000089012|Vega:OTTHUMG00000031680 20 20p13 signal-regulatory protein gamma protein-coding SIRPG signal-regulatory protein gamma O CD172 antigen-like family member B|CD172g antigen|SIRP beta 2|SIRP-beta-2|SIRP-gamma|signal-regulatory protein beta 2|signal-regulatory protein beta-2 20121230 -9606 55425 KIAA1704 AD029 LSR7|RP11-245H20.2|bA245H20.2 HGNC:20298|Ensembl:ENSG00000133114|HPRD:17225|Vega:OTTHUMG00000016841 13 13q13-q14 KIAA1704 protein-coding KIAA1704 KIAA1704 O lipopolysaccharide specific response-7 protein|lipopolysaccharide-specific response protein 7|uncharacterized protein KIAA1704 20121230 -9606 55432 YOD1 RP11-164O23.1 DUBA8|OTUD2|PRO0907 HGNC:25035|MIM:612023|Ensembl:ENSG00000180667|HPRD:10312|Vega:OTTHUMG00000036032 1 1q32.2 YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae) protein-coding YOD1 YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae) O DUBA-8|HIN-7|HIV-1-induced protease 7|OTU domain containing 2|OTU domain-containing protein 2|YOD1 OTU deubiquinating enzyme 1 homolog ( yeast)|hsHIN7|ubiquitin thioesterase OTU1 20121230 -9606 55435 AP1AR PRO0971 2C18|C4orf16|GBAR|gamma-BAR HGNC:28808|MIM:610851|Ensembl:ENSG00000138660|HPRD:12824|Vega:OTTHUMG00000132849 4 4q25 adaptor-related protein complex 1 associated regulatory protein protein-coding AP1AR adaptor-related protein complex 1 associated regulatory protein O AP-1 complex-associated regulatory protein|adapter-related protein complex 1-associated regulatory protein|gamma-1-adaptin brefeldin A resistance protein|gamma1-adaptin brefeldin A resistance protein, gamma-BAR 20121230 -9606 55437 STRADB PRO1038 ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK HGNC:13205|MIM:607333|Ensembl:ENSG00000082146|HPRD:09546|Vega:OTTHUMG00000132831 2 2q33.1 STE20-related kinase adaptor beta protein-coding STRADB STE20-related kinase adaptor beta O ILP-interacting protein ILPIPA|STE20-related kinase adapter protein beta|STRAD beta|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein|pseudokinase ALS2CR2 20121230 -9606 55448 PRO1483 - - - 11 11p13 uncharacterized LOC55448 unknown - - - - 20121006 -9606 55449 DHRS4-AS1 PRO1488 AS1DHRS4|C14orf167 HGNC:23175 14 14q11.2 DHRS4 antisense RNA 1 miscRNA DHRS4-AS1 DHRS4 antisense RNA 1 O - 20121230 -9606 55450 CAMK2N1 - PRO1489|RP11-401M16.1 HGNC:24190|MIM:614986|Ensembl:ENSG00000162545|HPRD:13112|Vega:OTTHUMG00000002837 1 1p36.12 calcium/calmodulin-dependent protein kinase II inhibitor 1 protein-coding CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1 O CaMKIINalpha 20121230 -9606 55451 LINC00216 PRO1617 C14orf107|NCRNA00216 HGNC:20191 14 14q22.3 long intergenic non-protein coding RNA 216 miscRNA LINC00216 long intergenic non-protein coding RNA 216 O - 20120131 -9606 55454 CSGALNACT2 PRO0082 CHGN2|GALNACT-2|GALNACT2 HGNC:24292|Ensembl:ENSG00000169826|HPRD:11348|Vega:OTTHUMG00000018023 10 10q11.21 chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 O beta 4 GalNAcT-2|chondroitin beta1,4 N-acetylgalactosaminyltransferase 2 20121230 -9606 55460 PRO1082 - - - 3 3p21.1-q13.13 uncharacterized protein PRO1082 unknown - - - - 20121120 -9606 55461 PRO1167 - - - 11 11cen-q12.1 uncharacterized protein PRO1167 unknown - - - - 20121120 -9606 55466 DNAJA4 - MST104|MSTP104|PRO1472 HGNC:14885|Ensembl:ENSG00000140403|HPRD:09920|Vega:OTTHUMG00000143733 15 15q25.1 DnaJ (Hsp40) homolog, subfamily A, member 4 protein-coding DNAJA4 DnaJ (Hsp40) homolog, subfamily A, member 4 O dnaJ homolog subfamily A member 4 20121230 -9606 55471 NDUFAF7 PRO1853 C2orf56|MidA HGNC:28816|Ensembl:ENSG00000003509|HPRD:15180|Vega:OTTHUMG00000128468 2 2p22.2 NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 protein-coding NDUFAF7 NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 O mitochondrial dysfunction protein A homolog|protein midA homolog, mitochondrial 20121230 -9606 55472 RBM12B-AS1 PRO1905 C8orf39 HGNC:28818 8 8q22.1 RBM12B antisense RNA 1 miscRNA RBM12B-AS1 RBM12B antisense RNA 1 O - 20121230 -9606 55478 PRO2012 - - - 1 1q42.13 uncharacterized protein PRO2012 unknown - - - - 20121006 -9606 55486 PARL PRO2207 PSARL|PSARL1|PSENIP2|RHBDS1 HGNC:18253|MIM:607858|Ensembl:ENSG00000175193|HPRD:08484|Vega:OTTHUMG00000156890 3 3q27.1 presenilin associated, rhomboid-like protein-coding PARL presenilin associated, rhomboid-like O mitochondrial intramembrane cleaving protease PARL|mitochondrial intramembrane-cleaving protease PARL|presenilins-associated rhomboid-like protein, mitochondrial|rhomboid 7 homolog 1 20121230 -9606 55500 ETNK1 - EKI|EKI 1|EKI1|Nbla10396 HGNC:24649|MIM:609858|Ensembl:ENSG00000139163|HPRD:09934|Vega:OTTHUMG00000169008 12 12p12.1 ethanolamine kinase 1 protein-coding ETNK1 ethanolamine kinase 1 O putative protein product of Nbla10396 20121230 -9606 55501 CHST12 UNQ500/PRO1017 C4S-2|C4ST-2|C4ST2 HGNC:17423|MIM:610129|Ensembl:ENSG00000136213|HPRD:13056|Vega:OTTHUMG00000023849 7 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 protein-coding CHST12 carbohydrate (chondroitin 4) sulfotransferase 12 O carbohydrate sulfotransferase 12|chondroitin 4-O-sulfotransferase 2|chondroitin 4-sulfotransferase 2|sulfotransferase Hlo 20121230 -9606 55502 HES6 - HES-6|bHLHb41|bHLHc23 HGNC:18254|MIM:610331|Ensembl:ENSG00000144485|HPRD:11021|Vega:OTTHUMG00000133340 2 2q37.3 hairy and enhancer of split 6 (Drosophila) protein-coding HES6 hairy and enhancer of split 6 (Drosophila) O C-HAIRY1|class B basic helix-loop-helix protein 41|transcription cofactor HES-6 20121230 -9606 55503 TRPV6 - ABP/ZF|CAT1|CATL|ECAC2|HSA277909|LP6728|ZFAB HGNC:14006|MIM:606680|Ensembl:ENSG00000165125|HPRD:05982|Vega:OTTHUMG00000157158 7 7q34 transient receptor potential cation channel, subfamily V, member 6 protein-coding TRPV6 transient receptor potential cation channel, subfamily V, member 6 O Alu-binding protein with zinc finger domain|caT-L|calcium channel CaT1|calcium transport protein 1|epithelial apical membrane calcium transporter/channel CaT1|epithelial calcium channel 2|transient receptor potential cation channel subfamily V member 6 20121230 -9606 55504 TNFRSF19 UNQ1888/PRO4333 TAJ|TAJ-alpha|TRADE|TROY HGNC:11915|MIM:606122|Ensembl:ENSG00000127863|HPRD:05838|Vega:OTTHUMG00000016568 13 13q12.11-q12.3 tumor necrosis factor receptor superfamily, member 19 protein-coding TNFRSF19 tumor necrosis factor receptor superfamily, member 19 O toxicity and JNK inducer|tumor necrosis factor receptor superfamily member 19 20121230 -9606 55505 NOP10 - DKCB1|NOLA3|NOP10P HGNC:14378|MIM:606471|Ensembl:ENSG00000182117|HPRD:07571|Vega:OTTHUMG00000129440 15 15q14-q15 NOP10 ribonucleoprotein protein-coding NOP10 NOP10 ribonucleoprotein O H/ACA ribonucleoprotein complex subunit 3|NOP10 ribonucleoprotein homolog|homolog of yeast Nop10p|nucleolar protein 10|nucleolar protein family A member 3|nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs)|snoRNP protein NOP10 20121230 -9606 55506 H2AFY2 RP11-367H5.3 macroH2A2 HGNC:14453|Ensembl:ENSG00000099284|HPRD:13625|Vega:OTTHUMG00000018396 10 10q22.1 H2A histone family, member Y2 protein-coding H2AFY2 H2A histone family, member Y2 O core histone macro-H2A.2|core histone macroH2A2.2|histone macroH2A2|mH2A2 20121230 -9606 55507 GPRC5D - - HGNC:13310|MIM:607437|Ensembl:ENSG00000111291|HPRD:07604|Vega:OTTHUMG00000168711 12 12p13.3 G protein-coupled receptor, family C, group 5, member D protein-coding GPRC5D G protein-coupled receptor, family C, group 5, member D O G-protein coupled receptor family C group 5 member D|orphan G-protein coupled receptor 20121230 -9606 55508 SLC35E3 UNQ3043/PRO9859 BLOV1 HGNC:20864|Ensembl:ENSG00000175782|HPRD:15375|Vega:OTTHUMG00000169282 12 12q15 solute carrier family 35, member E3 protein-coding SLC35E3 solute carrier family 35, member E3 O bladder cancer overexpressed protein|bladder cancer-overexpressed gene 1 protein|solute carrier family 35 member E3|solute carrier family 35, member E2 20121230 -9606 55509 BATF3 - JDP1|JUNDM1|SNFT HGNC:28915|MIM:612470|Ensembl:ENSG00000123685|HPRD:18081|Vega:OTTHUMG00000036807 1 1q32.3 basic leucine zipper transcription factor, ATF-like 3 protein-coding BATF3 basic leucine zipper transcription factor, ATF-like 3 O 21 kDa small nuclear factor isolated from T-cells|21-kD small nuclear factor isolated from T cells|B-ATF-3|Jun dimerization protein 1|Jun dimerization protein p21SNFT|basic leucine zipper transcriptional factor ATF-like 3 20121230 -9606 55510 DDX43 - CT13|HAGE HGNC:18677|MIM:606286|Ensembl:ENSG00000080007|HPRD:10448|Vega:OTTHUMG00000015033 6 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 protein-coding DDX43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 O DEAD box protein 43|DEAD box protein HAGE|DEAD-box protein 43|cancer/testis antigen 13|helical antigen|probable ATP-dependent RNA helicase DDX43 20121230 -9606 55511 SAGE1 RP11-97N5.1 CT14|SAGE HGNC:30369|MIM:300359|Ensembl:ENSG00000181433|HPRD:02290|Vega:OTTHUMG00000022496 X Xq26 sarcoma antigen 1 protein-coding SAGE1 sarcoma antigen 1 O cancer/testis antigen 14|putative tumor antigen 20121230 -9606 55512 SMPD3 - NSMASE2 HGNC:14240|MIM:605777|Ensembl:ENSG00000103056|HPRD:16154|Vega:OTTHUMG00000137559 16 16q22.1 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) protein-coding SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) O nSMase-2|neutral sphingomyelinase 2|neutral sphingomyelinase II|sphingomyelin phosphodiesterase 3 20121230 -9606 55515 ASIC4 - ACCN4|BNAC4 HGNC:21263|MIM:606715|Ensembl:ENSG00000072182|HPRD:16231|Vega:OTTHUMG00000058928 2 2q35 acid-sensing (proton-gated) ion channel family member 4 protein-coding ASIC4 acid-sensing (proton-gated) ion channel family member 4 O acid-sensing ion channel 4|amiloride-sensitive cation channel 4, pituitary|amiloride-sensitive cation channel family member 4, pituitary|brain sodium channel 4 20121230 -9606 55520 ELAC1 - D29 HGNC:14197|MIM:608079|Ensembl:ENSG00000141642|HPRD:16275|Vega:OTTHUMG00000132695 18 18q21 elaC homolog 1 (E. coli) protein-coding ELAC1 elaC homolog 1 (E. coli) O RNase Z 1|deleted in Ma29|elaC homolog protein 1|ribonuclease Z 1|tRNA 3 endonuclease 1|tRNA 3' processing endoribonuclease|tRNA Z (short form)|tRNase Z 1|tRNase ZS|zinc phosphodiesterase ELAC protein 1 20121230 -9606 55521 TRIM36 - HAPRIN|RBCC728|RNF98 HGNC:16280|MIM:609317|Ensembl:ENSG00000152503|HPRD:15554|Vega:OTTHUMG00000128892 5 5q22.3 tripartite motif containing 36 protein-coding TRIM36 tripartite motif containing 36 O E3 ubiquitin-protein ligase TRIM36|RING finger protein 98|tripartite motif protein 36|tripartite motif-containing 36|tripartite motif-containing protein 36|zinc-binding protein Rbcc728 20121230 -9606 55526 DHTKD1 - - HGNC:23537|MIM:614984|Ensembl:ENSG00000181192|HPRD:09917|Vega:OTTHUMG00000017677 10 10p14 dehydrogenase E1 and transketolase domain containing 1 protein-coding DHTKD1 dehydrogenase E1 and transketolase domain containing 1 O dehydrogenase E1 and transketolase domain-containing protein 1|probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial 20121230 -9606 55527 FEM1A - EPRAP HGNC:16934|MIM:613538|Ensembl:ENSG00000141965|HPRD:16888 19 19p13.3 fem-1 homolog a (C. elegans) protein-coding FEM1A fem-1 homolog a (C. elegans) O FEM1-alpha|prostaglandin E receptor 4-associated protein|protein fem-1 homolog A 20121230 -9606 55529 TMEM55A - - HGNC:25452|MIM:609864|Ensembl:ENSG00000155099|HPRD:13233|Vega:OTTHUMG00000164019 8 8q21.3 transmembrane protein 55A protein-coding TMEM55A transmembrane protein 55A O PtdIns-4,5-P(2) 4-phosphatase type II|ptdIns-4,5-P2 4-Ptase II|type II phosphatidylinositol 4,5-bisphosphate 4-phosphatase 20121230 -9606 55530 SVOP - - HGNC:25417|MIM:611699|Ensembl:ENSG00000166111|HPRD:13224|Vega:OTTHUMG00000169432 12 12q24.11 SV2 related protein homolog (rat) protein-coding SVOP SV2 related protein homolog (rat) O SV2-related protein|synaptic vesicle 2-related protein 20121230 -9606 55531 ELMOD1 - - HGNC:25334|Ensembl:ENSG00000110675|HPRD:10934|Vega:OTTHUMG00000166361 11 11q22.3 ELMO/CED-12 domain containing 1 protein-coding ELMOD1 ELMO/CED-12 domain containing 1 O ELMO domain containing 1|ELMO domain-containing protein 1 20121230 -9606 55532 SLC30A10 - HMDPC|ZNT10|ZNT8|ZRC1|ZnT-10 HGNC:25355|MIM:611146|Ensembl:ENSG00000196660|HPRD:15367|Vega:OTTHUMG00000037434 1 1q41 solute carrier family 30, member 10 protein-coding SLC30A10 solute carrier family 30, member 10 O zinc transporter 10|zinc transporter 8 20121230 -9606 55534 MAML3 - CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 HGNC:16272|MIM:608991|Ensembl:ENSG00000196782|HPRD:10066|Vega:OTTHUMG00000161441 4 4q28 mastermind-like 3 (Drosophila) protein-coding MAML3 mastermind-like 3 (Drosophila) O CAG repeat containing (glia-derived nexin I alpha)|CAG repeat domain|expanded repeat domain, CAG/CTG 3|mam-3|mastermind-like protein 3|polyglutamine rich|trinucleotide repeat containing 3 20121230 -9606 55536 CDCA7L - JPO2|R1|RAM2 HGNC:30777|MIM:609685|Ensembl:ENSG00000164649|HPRD:11481|Vega:OTTHUMG00000128429 7 7p15.3 cell division cycle associated 7-like protein-coding CDCA7L cell division cycle associated 7-like O cell division cycle-associated 7-like protein|transcription factor RAM2 20121230 -9606 55539 KCNQ1DN - BWRT|HSA404617 HGNC:13335|MIM:610980|HPRD:17174 11 11p15.4|11p15.5 KCNQ1 downstream neighbor (non-protein coding) miscRNA KCNQ1DN KCNQ1 downstream neighbor (non-protein coding) O - 20121230 -9606 55540 IL17RB UNQ2501/PRO19612 CRL4|EVI27|IL17BR|IL17RH1 HGNC:18015|MIM:605458|Ensembl:ENSG00000056736|HPRD:05677|Vega:OTTHUMG00000158280 3 3p21.1 interleukin 17 receptor B protein-coding IL17RB interleukin 17 receptor B O IL-17 receptor B|IL-17 receptor homolog 1|IL-17B receptor|IL-17RB|IL-17Rh1|cytokine receptor CRL4|cytokine receptor-like 4|interleukin 17 receptor homolog 1|interleukin 17B receptor|interleukin-17 receptor B|interleukin-17B receptor 20121230 -9606 55544 RBM38 - HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 HGNC:15818|MIM:612428|Ensembl:ENSG00000132819|HPRD:15268|Vega:OTTHUMG00000032820 20 20q13.31 RNA binding motif protein 38 protein-coding RBM38 RNA binding motif protein 38 O CLL-associated antigen KW-5|RNA-binding protein 38|RNA-binding region (RNP1, RRM) containing 1|RNA-binding region-containing protein 1|ssDNA-binding protein SEB4 20121230 -9606 55545 MSX2P1 - HPX5|HSHPX5|MSX2P HGNC:24976 17 17q22 msh homeobox 2 pseudogene 1 pseudo MSX2P1 msh homeobox 2 pseudogene 1 O - 20121230 -9606 55547 HAB1 - - - 7 - B1 for mucin protein-coding - - - - 20120710 -9606 55552 ZNF823 - HSZFP36 HGNC:30936|Ensembl:ENSG00000197933|Vega:OTTHUMG00000156528 19 19p13.2 zinc finger protein 823 protein-coding ZNF823 zinc finger protein 823 O ZFP 36 for a zinc finger protein|ZFP-36 for a zinc finger protein|zinc finger protein ZFP-36 20121230 -9606 55553 SOX6 - HSSOX6|SOXD HGNC:16421|MIM:607257|Ensembl:ENSG00000110693|HPRD:06267|Vega:OTTHUMG00000165876 11 11p15.3 SRY (sex determining region Y)-box 6 protein-coding SOX6 SRY (sex determining region Y)-box 6 O SRY-box containing gene 6|transcription factor SOX-6 20121230 -9606 55554 KLK15 - ACO|HSRNASPH HGNC:20453|MIM:610601|Ensembl:ENSG00000174562|HPRD:07490 19 19q13.41 kallikrein-related peptidase 15 protein-coding KLK15 kallikrein-related peptidase 15 O ACO protease|kallikrein-15|kallikrein-like serine protease|prostinogen 20121230 -9606 55556 ENOSF1 - HSRTSBETA|RTS|TYMSAS HGNC:30365|MIM:607427|Ensembl:ENSG00000132199|Vega:OTTHUMG00000131470 18 18p11.32 enolase superfamily member 1 protein-coding ENOSF1 enolase superfamily member 1 O antisense RNA to thymidylate synthase|mitochondrial enolase superfamily member 1|rTS alpha|rTS beta 20121230 -9606 55558 PLXNA3 XX-FW81657B9.3 6.3|HSSEXGENE|PLEXIN-A3|PLXN3|PLXN4|SEX|XAP-6 HGNC:9101|MIM:300022|Ensembl:ENSG00000130827|HPRD:02062|Vega:OTTHUMG00000033290 X Xq28 plexin A3 protein-coding PLXNA3 plexin A3 O Sex chromosome X transmembrane protein of HGF receptor family 3|plexin-4|plexin-A3|semaphorin receptor SEX 20121230 -9606 55559 HAUS7 - UCHL5IP|UIP1 HGNC:32979|MIM:300540|Ensembl:ENSG00000213397|HPRD:18695|Vega:OTTHUMG00000159321 X Xq28 HAUS augmin-like complex, subunit 7 protein-coding HAUS7 HAUS augmin-like complex, subunit 7 O 26S proteasome-associated UCH37-interacting protein 1|HAUS augmin-like complex subunit 7|UCHL5 interacting protein|X-linked protein STS1769 20121230 -9606 55561 CDC42BPG - DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma HGNC:29829|MIM:613991|Ensembl:ENSG00000171219|HPRD:13013|Vega:OTTHUMG00000045365 11 11q13.1 CDC42 binding protein kinase gamma (DMPK-like) protein-coding CDC42BPG CDC42 binding protein kinase gamma (DMPK-like) O CDC42-binding protein kinase gamma|DMPK-like gamma|MRCK gamma|myotonic dystrophy kinase-related CDC42-binding kinase gamma|myotonic dystrophy protein kinase like protein|myotonic dystrophy protein kinase-like alpha|myotonic dystrophy protein kinase-like gamma|serine/threonine-protein kinase MRCK gamma 20121230 -9606 55565 ZNF821 - - HGNC:28043|Ensembl:ENSG00000102984|HPRD:14244|Vega:OTTHUMG00000176874 16 16q22.2 zinc finger protein 821 protein-coding ZNF821 zinc finger protein 821 O - 20121230 -9606 55567 DNAH3 - DLP3|DNAHC3B|Hsadhc3 HGNC:2949|MIM:603334|Ensembl:ENSG00000158486|HPRD:04513|Vega:OTTHUMG00000090677 16 16p12.3 dynein, axonemal, heavy chain 3 protein-coding DNAH3 dynein, axonemal, heavy chain 3 O axonemal beta dynein heavy chain 3|axonemal dynein, heavy chain|ciliary dynein heavy chain 3|dnahc3-b|dynein heavy chain 3, axonemal|dynein, axonemal, heavy polypeptide 3 20121230 -9606 55568 GALNT10 - GALNACT10|PPGALNACT10|PPGANTASE10 HGNC:19873|MIM:608043|Ensembl:ENSG00000164574|HPRD:12157|Vega:OTTHUMG00000130145 5 5q33.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) protein-coding GALNT10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) O GalNAc transferase 10|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 10|polypeptide N-acetylgalactosaminyltransferase 10 20121230 -9606 55571 C2orf29 C40 - HGNC:25217|Ensembl:ENSG00000158435|HPRD:12812|Vega:OTTHUMG00000130686 2 2q11.2 chromosome 2 open reading frame 29 protein-coding C2orf29 chromosome 2 open reading frame 29 O UPF0760 protein C2orf29 20121230 -9606 55572 FOXRED1 FP634 H17 HGNC:26927|MIM:613622|Ensembl:ENSG00000110074|HPRD:13620|Vega:OTTHUMG00000165827 11 11q24.2 FAD-dependent oxidoreductase domain containing 1 protein-coding FOXRED1 FAD-dependent oxidoreductase domain containing 1 O FAD-dependent oxidoreductase domain-containing protein 1 20121230 -9606 55573 CDV3 - H41 HGNC:26928|Ensembl:ENSG00000091527|HPRD:13627|Vega:OTTHUMG00000159764 3 3q22.1 CDV3 homolog (mouse) protein-coding CDV3 CDV3 homolog (mouse) O carnitine deficiency-associated gene expressed in ventricle 3|protein CDV3 homolog 20121230 -9606 55576 STAB2 - FEEL2|FELE-2|FELL2|FEX2|HARE HGNC:18629|MIM:608561|Ensembl:ENSG00000136011|HPRD:10542|Vega:OTTHUMG00000170056 12 12q23.3 stabilin 2 protein-coding STAB2 stabilin 2 O CD44-like precursor FELL|FAS1 EGF-like and X-link domain containing adhesion molecule-2|fasciclin egf-like, laminin-type egf-like, and link domain-containing scavenger receptor-2|hepatic hyaluronan clearance receptor|hyaluronan receptor for endocytosis|hyaluronic acid receptor for endocytosis|stabilin-2 20121230 -9606 55577 NAGK - GNK|HSA242910 HGNC:17174|MIM:606828|Ensembl:ENSG00000124357|HPRD:08441|Vega:OTTHUMG00000153239 2 2p13.3 N-acetylglucosamine kinase protein-coding NAGK N-acetylglucosamine kinase O N-acetyl-D-glucosamine kinase|glcNAc kinase 20121230 -9606 55578 SUPT20H FP757 C13|C13orf19|FAM48A|P38IP|SPT20|bA421P11.4 HGNC:20596|MIM:613417|Ensembl:ENSG00000102710|HPRD:10135|Vega:OTTHUMG00000016747 13 13q13.3 suppressor of Ty 20 homolog (S. cerevisiae) protein-coding SUPT20H suppressor of Ty 20 homolog (S. cerevisiae) O family with sequence similarity 48, member A|p38 interacting protein|p38-interacting protein|protein FAM48A|transcription factor (p38 interacting protein)|tumor rejection antigen 20121230 -9606 55582 KIF27 - - HGNC:18632|MIM:611253|Ensembl:ENSG00000165115|HPRD:11179|Vega:OTTHUMG00000020109 9 9q21.32 kinesin family member 27 protein-coding KIF27 kinesin family member 27 O kinesin-like protein KIF27 20121230 -9606 55584 CHRNA9 - HSA243342|NACHRA9 HGNC:14079|MIM:605116|Ensembl:ENSG00000174343|HPRD:16092|Vega:OTTHUMG00000099375 4 4p14 cholinergic receptor, nicotinic, alpha 9 (neuronal) protein-coding CHRNA9 cholinergic receptor, nicotinic, alpha 9 (neuronal) O NACHR alpha 9|acetylcholine receptor, neuronal nicotinic, alpha-9 subunit|cholinergic receptor, nicotinic, alpha polypeptide 9|neuronal acetylcholine receptor protein, alpha-9 subunit|neuronal acetylcholine receptor subunit alpha-9|nicotinic acetylcholine receptor subunit alpha 9 20121230 -9606 55585 UBE2Q1 PRO3094 GTAP|NICE-5|UBE2Q HGNC:15698|Ensembl:ENSG00000160714|HPRD:15601|Vega:OTTHUMG00000037265 1 1q21.3 ubiquitin-conjugating enzyme E2Q family member 1 protein-coding UBE2Q1 ubiquitin-conjugating enzyme E2Q family member 1 O galactosyl transferase-associated protein|protein NICE-5|ubiquitin carrier protein Q1|ubiquitin-conjugating enzyme E2 Q1|ubiquitin-conjugating enzyme E2Q (putative) 1|ubiquitin-protein ligase Q1 20121230 -9606 55586 MIOX RP4-579N16.11-001 ALDRL6 HGNC:14522|MIM:606774|Ensembl:ENSG00000100253|HPRD:12443|Vega:OTTHUMG00000150207 22 22q13.3 myo-inositol oxygenase protein-coding MIOX myo-inositol oxygenase O MI oxygenase|aldehyde reductase (aldose reductase) like 6|aldehyde reductase-like 6|inositol oxygenase|kidney-specific protein 32|renal-specific oxidoreductase 20121230 -9606 55588 MED29 - IXL HGNC:23074|MIM:612914|Ensembl:ENSG00000063322|HPRD:13748 19 19q13.2 mediator complex subunit 29 protein-coding MED29 mediator complex subunit 29 O intersex-like protein|mediator of RNA polymerase II transcription subunit 29 20121230 -9606 55589 BMP2K HRIHFB2017 BIKE HGNC:18041|Ensembl:ENSG00000138756|HPRD:09828|Vega:OTTHUMG00000160900 4 4q21.21 BMP2 inducible kinase protein-coding BMP2K BMP2 inducible kinase O BMP-2-inducible protein kinase 20121230 -9606 55591 VEZT - VEZATIN HGNC:18258|Ensembl:ENSG00000028203|HPRD:11671|Vega:OTTHUMG00000170182 12 12q22 vezatin, adherens junctions transmembrane protein protein-coding VEZT vezatin, adherens junctions transmembrane protein O vezatin 20121230 -9606 55592 GOLGA2P5 PP1757 GOLGA2B|GOLGA2L1 HGNC:25315|HPRD:13195 12 12q23.1 golgin A2 pseudogene 5 pseudo GOLGA2P5 golgin A2 pseudogene 5 O - 20121230 -9606 55593 OTUD5 - DUBA HGNC:25402|MIM:300713|Ensembl:ENSG00000068308|HPRD:06488|Vega:OTTHUMG00000024130 X Xp11.23 OTU domain containing 5 protein-coding OTUD5 OTU domain containing 5 O OTU domain-containing protein 5|deubiquinating enzyme A|deubiquitinating enzyme A 20121230 -9606 55596 ZCCHC8 - - HGNC:25265|Ensembl:ENSG00000033030|HPRD:11698 12 12q24.31 zinc finger, CCHC domain containing 8 protein-coding ZCCHC8 zinc finger, CCHC domain containing 8 O zinc finger CCHC domain-containing protein 8 20121230 -9606 55599 RNPC3 - RBM40|RNP HGNC:18666|Ensembl:ENSG00000185946|HPRD:15267|Vega:OTTHUMG00000166613 1 1p21 RNA-binding region (RNP1, RRM) containing 3 protein-coding RNPC3 RNA-binding region (RNP1, RRM) containing 3 O RNA recognition protein|RNA-binding motif protein 40|RNA-binding protein 40|RNA-binding region-containing protein 3|U11/U12 small nuclear ribonucleoprotein 65 kDa protein|U11/U12 snRNP 65 kDa protein|U11/U12 snRNP 65K|U11/U12-65K 20121230 -9606 55600 ITLN1 UNQ640/PRO1270 HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin HGNC:18259|MIM:609873|Ensembl:ENSG00000179914|HPRD:17165|Vega:OTTHUMG00000028604 1 1q21.3 intelectin 1 (galactofuranose binding) protein-coding ITLN1 intelectin 1 (galactofuranose binding) O ITLN-1|endothelial lectin HL-1|galactofuranose-binding lectin|intelectin-1|intestinal lactoferrin receptor 20121230 -9606 55601 DDX60 - - HGNC:25942|MIM:613974|Ensembl:ENSG00000137628|HPRD:07877|Vega:OTTHUMG00000161350 4 4q32.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 protein-coding DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 O DEAD box protein 60|probable ATP-dependent RNA helicase DDX60 20121230 -9606 55602 CDKN2AIP - CARF HGNC:24325|Ensembl:ENSG00000168564|HPRD:16683|Vega:OTTHUMG00000160626 4 4q35.1 CDKN2A interacting protein protein-coding CDKN2AIP CDKN2A interacting protein O CDKN2A-interacting protein|collaborates/cooperates with ARF (alternate reading frame) protein|collaborator of ARF 20121230 -9606 55603 FAM46A RP1-300G12.3 C6orf37|XTP11 HGNC:18345|MIM:611357|Ensembl:ENSG00000112773|HPRD:13311|Vega:OTTHUMG00000015097 6 6q14 family with sequence similarity 46, member A protein-coding FAM46A family with sequence similarity 46, member A O HBV X-transactivated gene 11 protein|HBV XAg-transactivated protein 11|protein FAM46A|retinal expressed gene C6orf37 20121230 -9606 55604 LRRC16A - CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5 HGNC:21581|MIM:609593|Ensembl:ENSG00000079691|HPRD:11285|Vega:OTTHUMG00000014393 6 6p22.2 leucine rich repeat containing 16A protein-coding LRRC16A leucine rich repeat containing 16A O CARMIL homolog|capping protein, Arp2/3, and Myosin-I Linker homolog 1|leucine rich repeat containing 16|leucine-rich repeat-containing protein 16A 20121230 -9606 55605 KIF21A - CFEOM1|FEOM1|FEOM3A HGNC:19349|MIM:608283|Ensembl:ENSG00000139116|HPRD:10506|Vega:OTTHUMG00000169335 12 12q12 kinesin family member 21A protein-coding KIF21A kinesin family member 21A O kinesin-like protein KIF2|kinesin-like protein KIF21A|renal carcinoma antigen NY-REN-62 20121230 -9606 55607 PPP1R9A - NRB1|NRBI|Neurabin-I HGNC:14946|MIM:602468|Ensembl:ENSG00000158528|Vega:OTTHUMG00000155566 7 7q21.3 protein phosphatase 1, regulatory subunit 9A protein-coding PPP1R9A protein phosphatase 1, regulatory subunit 9A O neurabin-1|neural tissue-specific F-actin-binding protein I|protein phosphatase 1, regulatory (inhibitor) subunit 9A 20121230 -9606 55608 ANKRD10 RP11-120J20.3 - HGNC:20265|Ensembl:ENSG00000088448|HPRD:12455|Vega:OTTHUMG00000017349 13 13q34 ankyrin repeat domain 10 protein-coding ANKRD10 ankyrin repeat domain 10 O ankyrin repeat domain-containing protein 10 20121230 -9606 55609 ZNF280C RP3-438D16.3 SUHW3|ZNF633 HGNC:25955|Ensembl:ENSG00000056277|HPRD:06526|Vega:OTTHUMG00000022393 X Xq26.1 zinc finger protein 280C protein-coding ZNF280C zinc finger protein 280C O suppressor of hairy wing homolog 3|zinc finger protein 633 20121230 -9606 55610 CCDC132 - - HGNC:25956|Ensembl:ENSG00000004766|Vega:OTTHUMG00000131733 7 7q21.3 coiled-coil domain containing 132 protein-coding CCDC132 coiled-coil domain containing 132 O coiled-coil domain-containing protein 132 20121230 -9606 55611 OTUB1 HSPC263 OTB1|OTU1 HGNC:23077|MIM:608337|Ensembl:ENSG00000167770|HPRD:08493|Vega:OTTHUMG00000167786 11 11q13.1 OTU domain, ubiquitin aldehyde binding 1 protein-coding OTUB1 OTU domain, ubiquitin aldehyde binding 1 O OTU domain-containing ubiquitin aldehyde-binding protein 1|OTU-domain Ubal-binding 1|deubiquitinating enzyme OTUB1|otubain-1|ubiquitin thioesterase OTUB1|ubiquitin-specific protease otubain 1|ubiquitin-specific-processing protease OTUB1 20121230 -9606 55612 FERMT1 RP5-1056H1.1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 HGNC:15889|MIM:607900|Ensembl:ENSG00000101311|HPRD:06388|Vega:OTTHUMG00000031826 20 20p12.3 fermitin family member 1 protein-coding FERMT1 fermitin family member 1 O UNC112 related protein 1|fermitin family homolog 1|kindlerin|kindlin 1|kindlin syndrome protein|unc-112-related protein 1 20121230 -9606 55613 MTMR8 RP11-284B18.5 - HGNC:16825|Ensembl:ENSG00000102043|HPRD:06664|Vega:OTTHUMG00000021707 X Xq11.2 myotubularin related protein 8 protein-coding MTMR8 myotubularin related protein 8 O myotubularin-related protein 8 20121230 -9606 55614 KIF16B RP5-971B4.1 C20orf23|KISC20ORF|SNX23 HGNC:15869|Ensembl:ENSG00000089177|HPRD:10731|Vega:OTTHUMG00000031927 20 20p11.23 kinesin family member 16B protein-coding KIF16B kinesin family member 16B O kinesin motor protein|kinesin-like protein KIF16B|sorting nexin 23 20121230 -9606 55615 PRR5 RP1-181C9.3 FLJ20185k|PP610|PROTOR-1|PROTOR1 HGNC:31682|MIM:609406|Ensembl:ENSG00000186654|HPRD:18696|Vega:OTTHUMG00000150460 22 22q13 proline rich 5 (renal) protein-coding PRR5 proline rich 5 (renal) O Rho GTPase activating protein 8|proline-rich protein 5|protein observed with Rictor-1 20121230 -9606 55616 ASAP3 - ACAP4|CENTB6|DDEFL1|UPLC1 HGNC:14987|Ensembl:ENSG00000088280|HPRD:11662|Vega:OTTHUMG00000003234 1 1p36.12 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 O ARF6 GTPase-activating protein|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 1|arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3|centaurin, beta 6|development and differentiation enhancing factor-like 1|development and differentiation-enhancing factor-like 1|protein up-regulated in liver cancer 1|up-regulated in liver cancer 1 (UPLC1) 20121230 -9606 55617 TASP1 RP4-585I14.1 C20orf13|dJ585I14.2 HGNC:15859|MIM:608270|Ensembl:ENSG00000089123|HPRD:07460|Vega:OTTHUMG00000031904 20 20p12.1 taspase, threonine aspartase, 1 protein-coding TASP1 taspase, threonine aspartase, 1 O taspase 1|taspase-1|threonine aspartase 1 20121230 -9606 55619 DOCK10 - DRIP2|Nbla10300|ZIZ3 HGNC:23479|MIM:611518|Ensembl:ENSG00000135905|HPRD:10919|Vega:OTTHUMG00000153428 2 2q36.2 dedicator of cytokinesis 10 protein-coding DOCK10 dedicator of cytokinesis 10 O dedicator of cytokinesis protein 10|dopamine receptor interacting protein 2|protein zizimin 3|zizimin-3|zizimin3 20121230 -9606 55620 STAP2 - BKS HGNC:30430|MIM:607881|Ensembl:ENSG00000178078|HPRD:07430 19 19p13.3 signal transducing adaptor family member 2 protein-coding STAP2 signal transducing adaptor family member 2 O BRK substrate|breast tumor kinase substrate|brk kinase substrate|signal-transducing adaptor protein 2|signal-transducing adaptor protein-2 20121230 -9606 55621 TRMT1 - TRM1 HGNC:25980|MIM:611669|Ensembl:ENSG00000104907|HPRD:08617|Vega:OTTHUMG00000180730 19 19p13.2 tRNA methyltransferase 1 homolog (S. cerevisiae) protein-coding TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) O N(2),N(2)-dimethylguanosine tRNA methyltransferase|TRM1 tRNA methyltransferase 1 homolog|tRNA (guanine(26)-N(2))-dimethyltransferase|tRNA 2,2-dimethylguanosine-26 methyltransferase|tRNA(guanine-26,N(2)-N(2)) methyltransferase|tRNA(m(2,2)G26)dimethyltransferase 20121230 -9606 55622 TTC27 - - HGNC:25986|Ensembl:ENSG00000018699|HPRD:08618|Vega:OTTHUMG00000152134 2 2p22.3 tetratricopeptide repeat domain 27 protein-coding TTC27 tetratricopeptide repeat domain 27 O TPR repeat protein 27|tetratricopeptide repeat protein 27 20121230 -9606 55623 THUMPD1 - - HGNC:23807|Ensembl:ENSG00000066654|HPRD:08619|Vega:OTTHUMG00000131558 16 16p12.3 THUMP domain containing 1 protein-coding THUMPD1 THUMP domain containing 1 O THUMP domain-containing protein 1 20121230 -9606 55624 POMGNT1 RP11-322N21.3 GNTI.2|GnT I.2|LGMD2O|MDDGA3|MDDGB3|MDDGC3|MEB|MGAT1.2|gnT-I.2 HGNC:19139|MIM:606822|Ensembl:ENSG00000085998|HPRD:09493|Vega:OTTHUMG00000007604 1 1p34.1 protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase protein-coding POMGNT1 protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase O UDP-GlcNAc:alpha-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I.2|protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 20121230 -9606 55625 ZDHHC7 - DHHC7|SERZ-B|SERZ1|ZNF370 HGNC:18459|MIM:614604|Ensembl:ENSG00000153786|HPRD:15722|Vega:OTTHUMG00000137645 16 16q24.1 zinc finger, DHHC-type containing 7 protein-coding ZDHHC7 zinc finger, DHHC-type containing 7 O DHHC-7|Sertoli cell gene with zinc finger domain-β|palmitoyltransferase ZDHHC7|zinc finger DHHC domain-containing protein 7|zinc finger protein 370|zinc finger, DHHC domain containing 7 20121230 -9606 55626 AMBRA1 - DCAF3|WDR94 HGNC:25990|MIM:611359|Ensembl:ENSG00000110497|HPRD:10975|Vega:OTTHUMG00000166500 11 11p11.2 autophagy/beclin-1 regulator 1 protein-coding AMBRA1 autophagy/beclin-1 regulator 1 O DDB1 and CUL4 associated factor 3|WD repeat domain 94|activating molecule in BECN1-regulated autophagy protein 1|activating molecule in beclin-1-regulated autophagy 20121230 -9606 55627 SMPD4 - NET13|NSMASE-3|NSMASE3 HGNC:32949|MIM:610457|Ensembl:ENSG00000136699|HPRD:13374|Vega:OTTHUMG00000131624 2 2q21.1 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) protein-coding SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) O SKNY protein|neutral sphingomyelinase 3|neutral sphingomyelinase III|sphingomyelin phosphodiesterase 4 20121230 -9606 55628 ZNF407 - - HGNC:19904|Ensembl:ENSG00000215421|HPRD:11713|Vega:OTTHUMG00000179122 18 18q23 zinc finger protein 407 protein-coding ZNF407 zinc finger protein 407 O - 20121230 -9606 55629 PNRC2 RP11-4M23.5 - HGNC:23158|MIM:611882|Ensembl:ENSG00000189266|HPRD:17871|Vega:OTTHUMG00000013891 1 1p36.11 proline-rich nuclear receptor coactivator 2 protein-coding PNRC2 proline-rich nuclear receptor coactivator 2 O - 20121230 -9606 55630 SLC39A4 - AEZ|AWMS2|ZIP4 HGNC:17129|MIM:607059|Ensembl:ENSG00000147804|HPRD:06137|Vega:OTTHUMG00000165208 8 8q24.3 solute carrier family 39 (zinc transporter), member 4 protein-coding SLC39A4 solute carrier family 39 (zinc transporter), member 4 O ZIP-4|solute carrier family 39 member 4|zinc transporter ZIP4|zrt- and Irt-like protein 4 20121230 -9606 55631 LRRC40 RP4-677H15.1 dJ677H15.1 HGNC:26004|Ensembl:ENSG00000066557|HPRD:08622|Vega:OTTHUMG00000009348 1 1p31.1 leucine rich repeat containing 40 protein-coding LRRC40 leucine rich repeat containing 40 O leucine-rich repeat-containing protein 40 20121230 -9606 55632 G2E3 - KIAA1333|PHF7B HGNC:20338|MIM:611299|Ensembl:ENSG00000092140|HPRD:13851|Vega:OTTHUMG00000140204 14 14q12 G2/M-phase specific E3 ubiquitin protein ligase protein-coding G2E3 G2/M-phase specific E3 ubiquitin protein ligase O G2/M phase-specific E3 ubiquitin-protein ligase|G2/M-phase specific E3 ubiquitin ligase|PHD finger protein 7B 20121230 -9606 55633 TBC1D22B - C6orf197|RP4-744I24.2|dJ744I24.2 HGNC:21602|Ensembl:ENSG00000065491|HPRD:15475|Vega:OTTHUMG00000014619 6 6p21.2 TBC1 domain family, member 22B protein-coding TBC1D22B TBC1 domain family, member 22B O TBC1 domain family member 22B 20121230 -9606 55634 ZNF673 RP4-733D15.4 - HGNC:26007|MIM:300585|Ensembl:ENSG00000147121|HPRD:06530|Vega:OTTHUMG00000021421 X Xp11.3 zinc finger family member 673 protein-coding ZNF673 zinc finger family member 673 O protein ZNF673|putative zinc finger transcription factor|zinc finger protein 673 20121230 -9606 55635 DEPDC1 - DEP.8|DEPDC1-V2|DEPDC1A|SDP35 HGNC:22949|MIM:612002|Ensembl:ENSG00000024526|HPRD:10879|Vega:OTTHUMG00000009212 1 1p31.2 DEP domain containing 1 protein-coding DEPDC1 DEP domain containing 1 O 5830484J08Rik|DEP domain-containing protein 1A|cell cycle control protein SDP35 20121230 -9606 55636 CHD7 - HH5|IS3|KAL5 HGNC:20626|MIM:608892|Ensembl:ENSG00000171316|HPRD:10595|Vega:OTTHUMG00000165332 8 8q12.2 chromodomain helicase DNA binding protein 7 protein-coding CHD7 chromodomain helicase DNA binding protein 7 O ATP-dependent helicase CHD7|chromodomain helicase DNA binding protein 7 isoform CRA_e|chromodomain-helicase-DNA-binding protein 7 20121230 -9606 55638 SYBU - GOLSYN|OCSYN|SNPHL HGNC:26011|MIM:611568|Ensembl:ENSG00000147642|HPRD:07902|Vega:OTTHUMG00000165634 8 8q23.2 syntabulin (syntaxin-interacting) protein-coding SYBU syntabulin (syntaxin-interacting) O GOLSYN A protein|GOLSYN B protein|GOLSYN C protein|Golgi-localized protein|golgi-localized syntaphilin-related protein|implicated in syntaxin trafficking in neurons|microtubule-associated protein|syntabulin|syntaxin-1-binding protein 20121230 -9606 55640 FLVCR2 - C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH HGNC:20105|MIM:610865|Ensembl:ENSG00000119686|HPRD:12654|Vega:OTTHUMG00000171487 14 14q24.3 feline leukemia virus subgroup C cellular receptor family, member 2 protein-coding FLVCR2 feline leukemia virus subgroup C cellular receptor family, member 2 O calcium-chelate transporter|feline leukemia virus subgroup C receptor-related protein 2 20121230 -9606 55643 BTBD2 - - HGNC:15504|MIM:608531|Ensembl:ENSG00000133243|HPRD:12252|Vega:OTTHUMG00000180017 19 19p13.3 BTB (POZ) domain containing 2 protein-coding BTBD2 BTB (POZ) domain containing 2 O BTB/POZ domain-containing protein 2 20121230 -9606 55644 OSGEP - GCPL1|KAE1|OSGEP1|PRSMG1 HGNC:18028|MIM:610107|Ensembl:ENSG00000092094|HPRD:10133|Vega:OTTHUMG00000029543 14 14q11.2 O-sialoglycoprotein endopeptidase protein-coding OSGEP O-sialoglycoprotein endopeptidase O hOSGEP|probable O-sialoglycoprotein endopeptidase|probable tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP|t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEP 20121230 -9606 55646 LYAR PNAS-5 ZLYAR HGNC:26021|Ensembl:ENSG00000145220|HPRD:10064|Vega:OTTHUMG00000125477 4 4p16.3 Ly1 antibody reactive protein-coding LYAR Ly1 antibody reactive O Ly1 antibody reactive homolog|cell growth-regulating nucleolar protein 20121230 -9606 55647 RAB20 - - HGNC:18260|Ensembl:ENSG00000139832|HPRD:06694|Vega:OTTHUMG00000017343 13 13q34 RAB20, member RAS oncogene family protein-coding RAB20 RAB20, member RAS oncogene family O ras-related protein Rab-20 20121230 -9606 55650 PIGV RP1-50O24.2 GPI-MT-II|HPMRS1|PIG-V HGNC:26031|MIM:610274|Ensembl:ENSG00000060642|HPRD:07912|Vega:OTTHUMG00000004005 1 1p36.11 phosphatidylinositol glycan anchor biosynthesis, class V protein-coding PIGV phosphatidylinositol glycan anchor biosynthesis, class V O GPI mannosyltransferase 2|GPI mannosyltransferase II|Ybr004c homolog 20121230 -9606 55651 NHP2 HSPC286 DKCB2|NHP2P|NOLA2 HGNC:14377|MIM:606470|Ensembl:ENSG00000145912|HPRD:07570|Vega:OTTHUMG00000130886 5 5q35.3 NHP2 ribonucleoprotein protein-coding NHP2 NHP2 ribonucleoprotein O H/ACA ribonucleoprotein complex subunit 2|NHP2 ribonucleoprotein homolog|NHP2-like protein|nucleolar protein family A, member 2 (H/ACA small nucleolar RNPs)|snoRNP protein NHP2 20121230 -9606 55652 SLC48A1 - HRG-1|HRG1|hHRG-1 HGNC:26035|MIM:612187|Ensembl:ENSG00000211584|HPRD:07916|Vega:OTTHUMG00000156983 12 12q13.11 solute carrier family 48 (heme transporter), member 1 protein-coding SLC48A1 solute carrier family 48 (heme transporter), member 1 O heme transporter HRG1|heme-responsive gene 1 protein homolog|solute carrier family 48 member 1 20121230 -9606 55653 BCAS4 RP5-1071L10.2 CNOL HGNC:14367|MIM:607471|Ensembl:ENSG00000124243|HPRD:06314|Vega:OTTHUMG00000032735 20 20q13.13 breast carcinoma amplified sequence 4 protein-coding BCAS4 breast carcinoma amplified sequence 4 O BCAS4/BCAS3 fusion|breast carcinoma amplified sequence 4/3 fusion protein|breast carcinoma-amplified sequence 4 20121230 -9606 55654 TMEM127 - - HGNC:26038|MIM:613403|Ensembl:ENSG00000135956|HPRD:07917|Vega:OTTHUMG00000130454 2 2q11.2 transmembrane protein 127 protein-coding TMEM127 transmembrane protein 127 O - 20121230 -9606 55655 NLRP2 XXbac-BPG230H20.8 CLR19.9|NALP2|NBS1|PAN1|PYPAF2 HGNC:22948|MIM:609364|Ensembl:ENSG00000022556|HPRD:14805|Vega:OTTHUMG00000167763 19 19q13.42 NLR family, pyrin domain containing 2 protein-coding NLRP2 NLR family, pyrin domain containing 2 O NACHT, LRR and PYD containing protein 2|NACHT, LRR and PYD domains-containing protein 2|NACHT, leucine rich repeat and PYD containing 2|PYRIN domain and NACHT domain-containing protein 1|PYRIN-containing APAF1-like protein 2|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 2|nucleotide-binding site protein 1 20121230 -9606 55656 INTS8 - C8orf52|INT8 HGNC:26048|MIM:611351|Ensembl:ENSG00000164941|HPRD:08626|Vega:OTTHUMG00000164695 8 8q22.1 integrator complex subunit 8 protein-coding INTS8 integrator complex subunit 8 O protein kaonashi-1 20121230 -9606 55657 ZNF692 - AREBP|Zfp692 HGNC:26049|Ensembl:ENSG00000171163|HPRD:07922|Vega:OTTHUMG00000040423 1 1q44 zinc finger protein 692 protein-coding ZNF692 zinc finger protein 692 O AICAR responsive element binding protein 20121230 -9606 55658 RNF126 - - HGNC:21151|Ensembl:ENSG00000070423|HPRD:11501|Vega:OTTHUMG00000180592 19 19p13.3 ring finger protein 126 protein-coding RNF126 ring finger protein 126 O RING finger protein 126 20121230 -9606 55659 ZNF416 - - HGNC:20645|Ensembl:ENSG00000083817|HPRD:07926 19 19q13.4 zinc finger protein 416 protein-coding ZNF416 zinc finger protein 416 O - 20121230 -9606 55660 PRPF40A HSPC225 FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 HGNC:16463|MIM:612941|Ensembl:ENSG00000196504|Vega:OTTHUMG00000154031 2 2q23.3 PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) protein-coding PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) O Fas-ligand associated factor 1|Huntingtin-interacting protein A|NY-REN-6 antigen|fas ligand-associated factor 1|formin binding protein 3|formin-binding protein 11|huntingtin yeast partner A|huntingtin-interacting protein 10|pre-mRNA-processing factor 40 homolog A|renal carcinoma antigen NY-REN-6 20121230 -9606 55661 DDX27 HSPC259 DRS1|PP3241|RHLP|Rrp3p|dJ686N3.1 HGNC:15837|Ensembl:ENSG00000124228|HPRD:10859|Vega:OTTHUMG00000033072 20 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 protein-coding DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 O DEAD box protein 27|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 27|RNA helicase-like protein|probable ATP-dependent RNA helicase DDX27 20121230 -9606 55662 HIF1AN - FIH1 HGNC:17113|MIM:606615|Ensembl:ENSG00000166135|HPRD:09426|Vega:OTTHUMG00000018911 10 10q24 hypoxia inducible factor 1, alpha subunit inhibitor protein-coding HIF1AN hypoxia inducible factor 1, alpha subunit inhibitor O FIH-1|factor inhibiting HIF-1|factor inhibiting HIF1|hypoxia-inducible factor 1-alpha inhibitor|hypoxia-inducible factor asparagine hydroxylase|peptide-aspartate beta-dioxygenase 20121230 -9606 55663 ZNF446 - ZKSCAN20|ZSCAN30 HGNC:21036|Ensembl:ENSG00000083838|HPRD:07934 19 19q13.43 zinc finger protein 446 protein-coding ZNF446 zinc finger protein 446 O zinc finger protein with KRAB and SCAN domains 20 20121230 -9606 55664 CDC37L1 RP11-6J24.5 CDC37B|HARC HGNC:17179|MIM:610346|Ensembl:ENSG00000106993|HPRD:07120|Vega:OTTHUMG00000019465 9 9p24.1 cell division cycle 37 homolog (S. cerevisiae)-like 1 protein-coding CDC37L1 cell division cycle 37 homolog (S. cerevisiae)-like 1 O CDC37 cell division cycle 37 homolog-like 1|Hsp90-associating relative of Cdc37|hsp90 co-chaperone Cdc37-like 1 20121230 -9606 55665 URGCP - URG4 HGNC:30890|MIM:610337|Ensembl:ENSG00000106608|HPRD:11663|Vega:OTTHUMG00000155245 7 7p13 upregulator of cell proliferation protein-coding URGCP upregulator of cell proliferation O HBV X protein up-regulated gene 4 protein|HBxAg up-regulated gene 4 protein|up-regulated gene 4|up-regulator of cell proliferation 20121230 -9606 55666 NPLOC4 - NPL4 HGNC:18261|MIM:606590|Ensembl:ENSG00000182446|HPRD:06975|Vega:OTTHUMG00000177990 17 17qter nuclear protein localization 4 homolog (S. cerevisiae) protein-coding NPLOC4 nuclear protein localization 4 homolog (S. cerevisiae) O nuclear protein localization protein 4 homolog 20121230 -9606 55667 DENND4C RP11-513M16.1 C9orf55|C9orf55B|bA513M16.3 HGNC:26079|Ensembl:ENSG00000137145|HPRD:12927|Vega:OTTHUMG00000019627 9 9p22.1 DENN/MADD domain containing 4C protein-coding DENND4C DENN/MADD domain containing 4C O DENN domain-containing protein 4C|DENN/MADD domain containing 4A pseudogene 20121230 -9606 55668 GPATCH2L - C14orf118 HGNC:20210|Ensembl:ENSG00000089916|HPRD:16594|Vega:OTTHUMG00000171490 14 14q24.3 G patch domain containing 2-like protein-coding GPATCH2L G patch domain containing 2-like O uncharacterized protein C14orf118 20121230 -9606 55669 MFN1 - hfzo1|hfzo2 HGNC:18262|MIM:608506|Ensembl:ENSG00000171109|HPRD:16344|Vega:OTTHUMG00000157385 3 3q26.33 mitofusin 1 protein-coding MFN1 mitofusin 1 O fzo homolog|mitochondrial transmembrane GTPase FZO-2|mitochondrial transmembrane GTPase Fzo-1|mitofusin-1|putative transmembrane GTPase|transmembrane GTPase MFN1 20121230 -9606 55670 PEX26 - PBD7A|PBD7B|PEX26M1T|Pex26pM1T HGNC:22965|MIM:608666|Ensembl:ENSG00000215193|HPRD:10559|Vega:OTTHUMG00000149970 22 22q11.21 peroxisomal biogenesis factor 26 protein-coding PEX26 peroxisomal biogenesis factor 26 O peroxin-26|peroxisome assembly protein 26|peroxisome biogenesis disorder, complementation group 8|peroxisome biogenesis disorder, complementation group A|peroxisome biogenesis factor 26 20121230 -9606 55671 SMEK1 MSTP033 FLFL1|KIAA2010|PP4R3A|smk-1|smk1 HGNC:20219|MIM:610351|Ensembl:ENSG00000100796|HPRD:11176|Vega:OTTHUMG00000171102 14 14q32.12 SMEK homolog 1, suppressor of mek1 (Dictyostelium) protein-coding SMEK1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) O serine/threonine-protein phosphatase 4 regulatory subunit 3A 20121230 -9606 55672 NBPF1 - AB13|AB14|AB23|AD2|NBG|NBPF HGNC:26088|MIM:610501|HPRD:07946 1 1p36.13 neuroblastoma breakpoint family, member 1 protein-coding NBPF1 neuroblastoma breakpoint family, member 1 O neuroblastoma breakpoint family member 1 20121230 -9606 55676 SLC30A6 - MST103|MSTP103|ZNT6 HGNC:19305|MIM:611148|Ensembl:ENSG00000152683|HPRD:15368|Vega:OTTHUMG00000128456 2 2p22.3 solute carrier family 30 (zinc transporter), member 6 protein-coding SLC30A6 solute carrier family 30 (zinc transporter), member 6 O solute carrier family 30 member 6|zinc transporter 6|znT-6 20121230 -9606 55677 IWS1 - - HGNC:25467|Ensembl:ENSG00000163166|HPRD:07639|Vega:OTTHUMG00000131527 2 2q14.3 IWS1 homolog (S. cerevisiae) protein-coding IWS1 IWS1 homolog (S. cerevisiae) O IWS1-like protein|interacts with Spt6|protein IWS1 homolog 20121230 -9606 55679 LIMS2 - PINCH-2|PINCH2 HGNC:16084|MIM:607908|Ensembl:ENSG00000072163|Vega:OTTHUMG00000131529 2 2q14.3 LIM and senescent cell antigen-like domains 2 protein-coding LIMS2 LIM and senescent cell antigen-like domains 2 O ILK-binding protein|LIM and senescent cell antigen-like-containing domain protein 2|LIM-like protein 2|particularly interesting new Cys-His protein 2 20121230 -9606 55680 RUFY2 RP11-153K11.2 RABIP4R|ZFYVE13 HGNC:19761|MIM:610328|Ensembl:ENSG00000204130|HPRD:11526|Vega:OTTHUMG00000018353 10 10q21.3 RUN and FYVE domain containing 2 protein-coding RUFY2 RUN and FYVE domain containing 2 O RUN and FYVE domain-containing 2|RUN and FYVE domain-containing protein 2|Run- and FYVE-domain containing protein|antigen MU-RMS-40.17|rab4-interacting protein related 20121230 -9606 55681 SCYL2 - CVAK104 HGNC:19286|Ensembl:ENSG00000136021|HPRD:07642|Vega:OTTHUMG00000170319 12 12q23.1 SCY1-like 2 (S. cerevisiae) protein-coding SCYL2 SCY1-like 2 (S. cerevisiae) O SCY1-like protein 2|coated vesicle-associated kinase of 104 kDa 20121230 -9606 55683 KANSL3 - KIAA1310|NSL3|Rcd1 HGNC:25473|Ensembl:ENSG00000114982|HPRD:07643|Vega:OTTHUMG00000155249 2 2q11.2 KAT8 regulatory NSL complex subunit 3 protein-coding KANSL3 KAT8 regulatory NSL complex subunit 3 O NSL complex protein NSL3|non-specific lethal 3 homolog|serum inhibited-related protein|testis development protein PRTD 20121230 -9606 55684 RABL6 RP11-216L13.9 C9orf86|PARF|RBEL1|pp8875 HGNC:24703|MIM:610615|Ensembl:ENSG00000196642|HPRD:12984|Vega:OTTHUMG00000020947 9 9q34.3 RAB, member RAS oncogene family-like 6 protein-coding RABL6 RAB, member RAS oncogene family-like 6 O Rab-like GTP-binding protein 1C|partner of ARF|putative GTP-binding protein Parf|rab-like protein 6 20121230 -9606 55686 MREG HDCGA21P DSU|WDT2 HGNC:25478|MIM:609207|Ensembl:ENSG00000118242|HPRD:07645|Vega:OTTHUMG00000154828 2 2q35 melanoregulin protein-coding MREG melanoregulin O dilute suppressor protein homolog|whn-dependent transcript 2 20121230 -9606 55687 TRMU - MTO2|MTU1|TRMT|TRMT1|TRNT1 HGNC:25481|MIM:610230|Ensembl:ENSG00000100416|HPRD:15571|Vega:OTTHUMG00000150424 22 22q13 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding TRMU tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase O MTO2 homolog|mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase|mitochondrial tRNA-specific 2-thiouridylase 1 20121230 -9606 55689 YEATS2 - - HGNC:25489|MIM:613373|Ensembl:ENSG00000163872|HPRD:07652|Vega:OTTHUMG00000156898 3 3q27.1 YEATS domain containing 2 protein-coding YEATS2 YEATS domain containing 2 O YEATS domain-containing protein 2 20121230 -9606 55690 PACS1 - - HGNC:30032|MIM:607492|Ensembl:ENSG00000175115|HPRD:06320|Vega:OTTHUMG00000166889 11 11q13.1-q13.2 phosphofurin acidic cluster sorting protein 1 protein-coding PACS1 phosphofurin acidic cluster sorting protein 1 O PACS-1|cytosolic sorting protein PACS-1 20121230 -9606 55691 FRMD4A RP11-397C18.4 FRMD4|bA295P9.4 HGNC:25491|Ensembl:ENSG00000151474|HPRD:13553|Vega:OTTHUMG00000017708 10 10p13 FERM domain containing 4A protein-coding FRMD4A FERM domain containing 4A O FERM domain-containing protein 4A 20121230 -9606 55692 LUC7L LA16c-OS12.1 LUC7-LIKE|LUC7B1|Luc7|SR+89|hLuc7B1 HGNC:6723|MIM:607782|Ensembl:ENSG00000007392|HPRD:08476|Vega:OTTHUMG00000060730 16 16p13.3 LUC7-like (S. cerevisiae) protein-coding LUC7L LUC7-like (S. cerevisiae) O putative RNA-binding protein Luc7-like 1|putative SR protein LUC7B1|sarcoplasmic reticulum protein LUC7B1 20121230 -9606 55693 KDM4D - JMJD2D HGNC:25498|MIM:609766|Ensembl:ENSG00000186280|HPRD:17169|Vega:OTTHUMG00000167838 11 11q21 lysine (K)-specific demethylase 4D protein-coding KDM4D lysine (K)-specific demethylase 4D O jmjC domain-containing histone demethylation protein 3D|jumonji domain containing 2D|jumonji domain-containing protein 2D|lysine-specific demethylase 4D 20121230 -9606 55695 NSUN5 - NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120 HGNC:16385|Ensembl:ENSG00000130305|HPRD:11678|Vega:OTTHUMG00000129869 7 7q11.23 NOP2/Sun domain family, member 5 protein-coding NSUN5 NOP2/Sun domain family, member 5 O NOL1-related protein|NOL1/NOP2/Sun domain family member 5|NOL1/NOP2/Sun domain family, member 5|NOP2/Sun domain family, member 5A|Williams Beuren syndrome chromosome region 20A|Williams-Beuren syndrome critical region protein 20 copy A|putative methyltransferase NSUN5|williams-Beuren syndrome chromosomal region 20A protein 20121230 -9606 55696 RBM22 199G4 Cwc2|ZC3H16|fSAP47 HGNC:25503|MIM:612430|Ensembl:ENSG00000086589|HPRD:10186|Vega:OTTHUMG00000163589 5 5q33.1 RNA binding motif protein 22 protein-coding RBM22 RNA binding motif protein 22 O RNA-binding motif protein 22|functional spliceosome-associated protein 47|pre-mRNA-splicing factor RBM22|zinc finger CCCH domain-containing protein 16 20121230 -9606 55697 VAC14 - ArPIKfyve|TAX1BP2|TRX HGNC:25507|MIM:604632|Ensembl:ENSG00000103043|HPRD:07660|Vega:OTTHUMG00000137583 16 16q22.1 Vac14 homolog (S. cerevisiae) protein-coding VAC14 Vac14 homolog (S. cerevisiae) O Tax1 (human T-cell leukemia virus type I) binding protein 1|Tax1 (human T-cell leukemia virus type I) binding protein 2|protein VAC14 homolog|tax1-binding protein 2 20121230 -9606 55698 RADIL - RASIP2 HGNC:22226|MIM:611491|Ensembl:ENSG00000157927|HPRD:07663|Vega:OTTHUMG00000151753 7 7p22.1 Ras association and DIL domains protein-coding RADIL Ras association and DIL domains O Rap GTPase interactor|ras-associating and dilute domain-containing protein 20121230 -9606 55699 IARS2 - ILERS HGNC:29685|MIM:612801|Ensembl:ENSG00000067704|HPRD:13334|Vega:OTTHUMG00000037287 1 1q41 isoleucyl-tRNA synthetase 2, mitochondrial protein-coding IARS2 isoleucyl-tRNA synthetase 2, mitochondrial O isoleucine tRNA ligase 2, mitochondrial|isoleucine--tRNA ligase, mitochondrial|isoleucine-tRNA synthetase 2, mitochondrial|isoleucyl-tRNA synthetase, mitochondrial|mitochondrial isoleucine tRNA synthetase 20121230 -9606 55700 MAP7D1 PP2464 PARCC1|RPRC1 HGNC:25514|Ensembl:ENSG00000116871|HPRD:07666|Vega:OTTHUMG00000007714 1 1p34.3 MAP7 domain containing 1 protein-coding MAP7D1 MAP7 domain containing 1 O MAP7 domain-containing protein 1|arginine/proline rich coiled-coil 1|arginine/proline-rich coiled-coil domain-containing protein 1|proline arginine rich coiled coil 1|proline/arginine-rich coiled-coil domain-containing protein 1 20121230 -9606 55701 ARHGEF40 - SOLO HGNC:25516|MIM:610018|Ensembl:ENSG00000165801|HPRD:13335|Vega:OTTHUMG00000171359 14 14q11.2 Rho guanine nucleotide exchange factor (GEF) 40 protein-coding ARHGEF40 Rho guanine nucleotide exchange factor (GEF) 40 O protein SOLO|rho guanine nucleotide exchange factor 40 20121230 -9606 55702 CCDC94 - - HGNC:25518|Ensembl:ENSG00000105248|HPRD:08546 19 19p13.3 coiled-coil domain containing 94 protein-coding CCDC94 coiled-coil domain containing 94 O coiled-coil domain-containing protein 94 20121230 -9606 55703 POLR3B - C128|HLD8|RPC2 HGNC:30348|MIM:614366|Ensembl:ENSG00000013503|HPRD:11447|Vega:OTTHUMG00000170077 12 12q23.3 polymerase (RNA) III (DNA directed) polypeptide B protein-coding POLR3B polymerase (RNA) III (DNA directed) polypeptide B O DNA-directed RNA polymerase III 127.6 kDa polypeptide|DNA-directed RNA polymerase III subunit B|DNA-directed RNA polymerase III subunit RPC2|RNA polymerase III subunit C2 20121230 -9606 55704 CCDC88A - APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212 HGNC:25523|MIM:609736|Ensembl:ENSG00000115355|HPRD:10051|HPRD:11131|Vega:OTTHUMG00000151915 2 2p16.1 coiled-coil domain containing 88A protein-coding CCDC88A coiled-coil domain containing 88A O AKT-phosphorylation enhancer|Hook-related protein 1|g alpha-interacting vesicle-associated protein|girders of actin filament|girdin 20121230 -9606 55705 IPO9 RP11-90L20.4 Imp9 HGNC:19425|Ensembl:ENSG00000198700|HPRD:17154|Vega:OTTHUMG00000035805 1 1q32.1 importin 9 protein-coding IPO9 importin 9 O importin-9|ran-binding protein 9|ranBP9 20121230 -9606 55706 TMEM48 RP4-654H19.1 NDC1|NET3 HGNC:25525|MIM:610115|Ensembl:ENSG00000058804|HPRD:08547|Vega:OTTHUMG00000008073 1 1p32.3 transmembrane protein 48 protein-coding TMEM48 transmembrane protein 48 O nucleoporin NDC1 20121230 -9606 55707 NECAP2 - - HGNC:25528|MIM:611624|Ensembl:ENSG00000157191|HPRD:07674|Vega:OTTHUMG00000002313 1 1p36.13 NECAP endocytosis associated 2 protein-coding NECAP2 NECAP endocytosis associated 2 O NECAP endocytosis-associated protein 2|NECAP-2|adaptin ear-binding coat-associated protein 2|adaptin-ear-binding coat-associated protein 2 20121230 -9606 55709 KBTBD4 - BKLHD4|HSPC252 HGNC:23761|Ensembl:ENSG00000123444|HPRD:13757|Vega:OTTHUMG00000166894 11 11p11.2 kelch repeat and BTB (POZ) domain containing 4 protein-coding KBTBD4 kelch repeat and BTB (POZ) domain containing 4 O BTB and kelch domain containing 4|BTB and kelch domain-containing protein 4|kelch repeat and BTB domain-containing protein 4 20121230 -9606 55711 FAR2 - MLSTD1|SDR10E2 HGNC:25531|Ensembl:ENSG00000064763|HPRD:14723|Vega:OTTHUMG00000169320 12 12p11.22 fatty acyl CoA reductase 2 protein-coding FAR2 fatty acyl CoA reductase 2 O fatty acyl-CoA reductase 2|male sterility domain-containing protein 1|short chain dehydrogenase/reductase family 10E, member 2 20121230 -9606 55713 ZNF334 RP11-179N14.1 - HGNC:15806|Ensembl:ENSG00000198185|HPRD:15777|Vega:OTTHUMG00000032654 20 20q13.12 zinc finger protein 334 protein-coding ZNF334 zinc finger protein 334 O - 20121230 -9606 55714 TENM3 - ODZ3|TNM3|Ten-m3 HGNC:29944|MIM:610083|Ensembl:ENSG00000218336|Vega:OTTHUMG00000160682 4 4q35.1 teneurin transmembrane protein 3 protein-coding TENM3 teneurin transmembrane protein 3 O ODZ3-like protein|odd Oz/Ten-m homolog 3|odz, odd Oz/ten-m homolog 3|protein Odd Oz/ten-m homolog 3|ten-3|tenascin-M3|teneurin-3 20121230 -9606 55715 DOK4 - - HGNC:19868|MIM:608333|Ensembl:ENSG00000125170|HPRD:16316|Vega:OTTHUMG00000133460 16 16q21 docking protein 4 protein-coding DOK4 docking protein 4 O IRS-5|IRS5|downstream of tyrosine kinase 4|insulin receptor substrate 5 20121230 -9606 55716 LMBR1L UNQ458/PRO783 LIMR HGNC:18268|MIM:610007|Ensembl:ENSG00000139636|HPRD:17276|Vega:OTTHUMG00000150511 12 12q13.12 limb region 1 homolog (mouse)-like protein-coding LMBR1L limb region 1 homolog (mouse)-like O limb region 1 protein homolog-like|lipocalin-1 interacting membrane receptor|lipocalin-1-interacting membrane receptor|lipocalin-interacting membrane receptor|protein LMBR1L 20121230 -9606 55717 WDR11 - BRWD2|DR11|HH14|WDR15 HGNC:13831|MIM:606417|Ensembl:ENSG00000120008|HPRD:16218|Vega:OTTHUMG00000019171 10 10q26 WD repeat domain 11 protein-coding WDR11 WD repeat domain 11 O WD repeat domain 15|WD repeat-containing protein 11|WD repeat-containing protein 15|bromodomain and WD repeat-containing protein 2 20121230 -9606 55718 POLR3E - RPC5|SIN HGNC:30347|Ensembl:ENSG00000058600|HPRD:15155|Vega:OTTHUMG00000094779 16 16p12.2 polymerase (RNA) III (DNA directed) polypeptide E (80kD) protein-coding POLR3E polymerase (RNA) III (DNA directed) polypeptide E (80kD) O DNA-directed RNA polymerase III 80 kDa polypeptide|DNA-directed RNA polymerase III subunit RPC5|RNA polymerase III 80 kDa subunit RPC5|RNA polymerase III subunit C5 20121230 -9606 55719 FAM178A - C10orf6 HGNC:17814|MIM:610348|Ensembl:ENSG00000119906|HPRD:12581|Vega:OTTHUMG00000018919 10 10q24.31 family with sequence similarity 178, member A protein-coding FAM178A family with sequence similarity 178, member A O protein FAM178A 20121230 -9606 55720 TSR1 - - HGNC:25542|MIM:611214|Ensembl:ENSG00000167721|HPRD:07681|Vega:OTTHUMG00000177636 17 17p13.3 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) protein-coding TSR1 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) O pre-rRNA-processing protein TSR1 homolog 20121230 -9606 55721 IQCC - RP4-622L5.6 HGNC:25545|Ensembl:ENSG00000160051|HPRD:07683|Vega:OTTHUMG00000005739 1 1p36.11-p34.2 IQ motif containing C protein-coding IQCC IQ motif containing C O IQ domain-containing protein C 20121230 -9606 55722 CEP72 - - HGNC:25547|Ensembl:ENSG00000112877|HPRD:07685|Vega:OTTHUMG00000161745 5 5p15.33 centrosomal protein 72kDa protein-coding CEP72 centrosomal protein 72kDa O centrosomal protein of 72 kDa 20121230 -9606 55723 ASF1B - CIA-II HGNC:20996|MIM:609190|Ensembl:ENSG00000105011|HPRD:16460|Vega:OTTHUMG00000150401 19 19p13.12 ASF1 anti-silencing function 1 homolog B (S. cerevisiae) protein-coding ASF1B ASF1 anti-silencing function 1 homolog B (S. cerevisiae) O CCG1-interacting factor A-II|anti-silencing function protein 1 homolog B|hAsf1|hAsf1b|hCIA-II|histone chaperone ASF1B 20121230 -9606 55726 ASUN - C12orf11|Mat89Bb|NET48|SPATA30 HGNC:20174|Ensembl:ENSG00000064102|HPRD:07689|Vega:OTTHUMG00000169193 12 12p11.23 asunder, spermatogenesis regulator protein-coding ASUN asunder, spermatogenesis regulator O asunder, spermatogenesis regulator homolog (Drosphila)|cell cycle regulator Mat89Bb homolog|protein asunder homolog|sarcoma antigen NY-SAR-95|spermatogenesis associated 30 20121230 -9606 55727 BTBD7 - FUP1 HGNC:18269|MIM:610386|Ensembl:ENSG00000011114|HPRD:12541|Vega:OTTHUMG00000171269 14 14q32.12 BTB (POZ) domain containing 7 protein-coding BTBD7 BTB (POZ) domain containing 7 O BTB/POZ domain-containing protein 7 20121230 -9606 55728 N4BP2 - B3BP HGNC:29851|Ensembl:ENSG00000078177|HPRD:11382|Vega:OTTHUMG00000128599 4 4p14 NEDD4 binding protein 2 protein-coding N4BP2 NEDD4 binding protein 2 O BCL-3-binding protein|NEDD4-binding protein 2 20121230 -9606 55729 ATF7IP - AM|MCAF|MCAF1|p621 HGNC:20092|MIM:613644|Ensembl:ENSG00000171681|HPRD:09811|Vega:OTTHUMG00000168656 12 12p13.1 activating transcription factor 7 interacting protein protein-coding ATF7IP activating transcription factor 7 interacting protein O ATF-IP|ATF-interacting protein|ATF7-interacting protein|ATFa-associated modulator|MBD1-containing chromatin associated factor|MBD1-containing chromatin-associated factor 1|activating transcription factor 7-interacting protein 1|hAM 20121230 -9606 55731 FAM222B - C17orf63 HGNC:25563|Ensembl:ENSG00000173065|HPRD:07693|Vega:OTTHUMG00000179495 17 17q11.2 family with sequence similarity 222, member B protein-coding FAM222B family with sequence similarity 222, member B O protein FAM222B|uncharacterized protein C17orf63 20121230 -9606 55732 C1orf112 - RP1-97P20.1 HGNC:25565|Ensembl:ENSG00000000460|HPRD:07694|Vega:OTTHUMG00000035821 1 1q24.2 chromosome 1 open reading frame 112 protein-coding C1orf112 chromosome 1 open reading frame 112 O uncharacterized protein C1orf112 20121230 -9606 55733 HHAT - MART2|SKI1|Skn HGNC:18270|MIM:605743|Ensembl:ENSG00000054392|HPRD:12041|Vega:OTTHUMG00000036447 1 1q32 hedgehog acyltransferase protein-coding HHAT hedgehog acyltransferase O melanoma antigen recognized by T cells 2|melanoma antigen recognized by T-cells 2|protein-cysteine N-palmitoyltransferase HHAT|skinny hedgehog protein 1 20121230 -9606 55734 ZFP64 RP5-831D17.3 ZNF338 HGNC:15940|Ensembl:ENSG00000020256|HPRD:15728|Vega:OTTHUMG00000032756 20 20q13.2 ZFP64 zinc finger protein protein-coding ZFP64 ZFP64 zinc finger protein O zinc finger protein 338|zinc finger protein 64|zinc finger protein 64 homolog 20121230 -9606 55735 DNAJC11 RP1-126A5.3 dJ126A5.1 HGNC:25570|MIM:614827|Ensembl:ENSG00000007923|HPRD:07112|Vega:OTTHUMG00000001443 1 1p36.31 DnaJ (Hsp40) homolog, subfamily C, member 11 protein-coding DNAJC11 DnaJ (Hsp40) homolog, subfamily C, member 11 O dnaJ homolog subfamily C member 11|novel DnaJ domain-containing protein 20121230 -9606 55737 VPS35 TCCCTA00141 MEM3|PARK17 HGNC:13487|MIM:601501|Ensembl:ENSG00000069329|HPRD:06085|Vega:OTTHUMG00000132542 16 16q12 vacuolar protein sorting 35 homolog (S. cerevisiae) protein-coding VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) O hVPS35|maternal-embryonic 3|vacuolar protein sorting-associated protein 35 20121230 -9606 55738 ARFGAP1 RP11-261N11.1 ARF1GAP|HRIHFB2281 HGNC:15852|MIM:608377|Ensembl:ENSG00000101199|HPRD:06443|Vega:OTTHUMG00000032965 20 20q13.33 ADP-ribosylation factor GTPase activating protein 1 protein-coding ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 O ADP-ribosylation factor 1 GTPase activating protein|ADP-ribosylation factor 1 GTPase-activating protein|ADP-ribosylation factor GTPase-activating protein 1|ARF GAP 1|ARF1 GAP|ARF1-directed GTPase-activating protein|GAP protein 20121230 -9606 55739 CARKD - LP3298 HGNC:25576|Ensembl:ENSG00000213995|HPRD:07698|Vega:OTTHUMG00000017345 13 13q34 carbohydrate kinase domain containing protein-coding CARKD carbohydrate kinase domain containing O ATP-dependent (S)-NAD(P)H-hydrate dehydratase|ATP-dependent NAD(P)HX dehydratase|carbohydrate kinase domain-containing protein 20121230 -9606 55740 ENAH RP11-496N12.7 ENA|MENA|NDPP1 HGNC:18271|MIM:609061|Ensembl:ENSG00000154380|HPRD:12360|Vega:OTTHUMG00000037742 1 1q42.12 enabled homolog (Drosophila) protein-coding ENAH enabled homolog (Drosophila) O protein enabled homolog 20121230 -9606 55741 EDEM2 UNQ573/PRO1135 C20orf31|C20orf49|bA4204.1 HGNC:15877|MIM:610302|Ensembl:ENSG00000088298|HPRD:09841|Vega:OTTHUMG00000032322 20 20q11.22 ER degradation enhancer, mannosidase alpha-like 2 protein-coding EDEM2 ER degradation enhancer, mannosidase alpha-like 2 O ER degradation-enhancing alpha-mannosidase-like 2|ER degradation-enhancing-mannosidase-like protein 2 20121230 -9606 55742 PARVA - CH-ILKBP|MXRA2 HGNC:14652|MIM:608120|Ensembl:ENSG00000197702|HPRD:16283|Vega:OTTHUMG00000165778 11 11p15.3 parvin, alpha protein-coding PARVA parvin, alpha O actopaxin|alpha-parvin|calponin-like integrin-linked kinase-binding protein|matrix-remodeling-associated protein 2 20121230 -9606 55743 CHFR - RNF116|RNF196 HGNC:20455|MIM:605209|Ensembl:ENSG00000072609|Vega:OTTHUMG00000167930 12 12q24.33 checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase protein-coding CHFR checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase CHFR|RING finger protein 196|checkpoint with forkhead and RING finger domains protein 20121230 -9606 55744 COA1 - C7orf44|MITRAC15 HGNC:21868|MIM:614769|Ensembl:ENSG00000106603|HPRD:07700|Vega:OTTHUMG00000128949 7 7p13 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) protein-coding COA1 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) O cytochrome oxidase assembly 1|cytochrome oxidase assembly protein 1 homolog 20121230 -9606 55745 AP5M1 - C14orf108|MUDENG|Mu5|MuD HGNC:20192|MIM:614368|Ensembl:ENSG00000053770|HPRD:12630|Vega:OTTHUMG00000140318 14 14q22.3 adaptor-related protein complex 5, mu 1 subunit protein-coding AP5M1 adaptor-related protein complex 5, mu 1 subunit O AP-5 complex subunit mu|AP-5 complex subunit mu-1|MHD domain-containing death-inducing protein|MU-2/AP1M2 domain containing, death-inducing|Mu-2 related death-inducing|adapter-related protein complex 5 mu subunit|mu-2-related death-inducing protein|putative HIV-1 infection-related protein 20121230 -9606 55746 NUP133 RP5-1068B5.4 hNUP133 HGNC:18016|MIM:607613|Ensembl:ENSG00000069248|HPRD:06354|Vega:OTTHUMG00000039462 1 1q42.13 nucleoporin 133kDa protein-coding NUP133 nucleoporin 133kDa O 133 kDa nucleoporin|nuclear pore complex protein Nup133|nucleoporin Nup133 20121230 -9606 55747 FAM21B RP11-98I6.1 FAM21A|bA98I6.1 HGNC:23417|Ensembl:ENSG00000152726|Vega:OTTHUMG00000018133 10 10q11.22 family with sequence similarity 21, member B protein-coding FAM21B family with sequence similarity 21, member B O WASH complex subunit FAM21B|family with sequence similarity 21, member A 20121230 -9606 55748 CNDP2 - CN2|CPGL|HsT2298|PEPA HGNC:24437|MIM:169800|Ensembl:ENSG00000133313|HPRD:09893|Vega:OTTHUMG00000132853 18 18q22.3 CNDP dipeptidase 2 (metallopeptidase M20 family) protein-coding CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) O cytosolic non-specific dipeptidase|cytosolic nonspecific dipeptidase|glutamate carboxypeptidase-like protein 1|peptidase A 20121230 -9606 55749 CCAR1 - RP11-437A18.1 HGNC:24236|MIM:612569|Ensembl:ENSG00000060339|HPRD:10811|Vega:OTTHUMG00000018361 10 10q21.3 cell division cycle and apoptosis regulator 1 protein-coding CCAR1 cell division cycle and apoptosis regulator 1 O cell cycle and apoptosis regulatory protein 1|cell division cycle and apoptosis regulator protein 1|death inducer with SAP domain 20121230 -9606 55750 AGK - CATC5|MTDPS10|MULK HGNC:21869|MIM:610345|Ensembl:ENSG00000006530|HPRD:08554|Vega:OTTHUMG00000157499 7 7q34 acylglycerol kinase protein-coding AGK acylglycerol kinase O acylglycerol kinase, mitochondrial|hAGK|hsMuLK|multi-substrate lipid kinase|multiple substrate lipid kinase 20121230 -9606 55751 TMEM184C PRO1355 TMEM34 HGNC:25587|MIM:613937|Ensembl:ENSG00000164168|HPRD:07702|Vega:OTTHUMG00000161358 4 4q31.23 transmembrane protein 184C protein-coding TMEM184C transmembrane protein 184C O transmembrane protein 34 20121230 -9606 55752 SEPT11 - - HGNC:25589|MIM:612887|Ensembl:ENSG00000138758|HPRD:08555|Vega:OTTHUMG00000160854 4 4q21.1 septin 11 protein-coding SEPT11 septin 11 O septin-11 20121230 -9606 55753 OGDHL - - HGNC:25590|Ensembl:ENSG00000197444|HPRD:07704|Vega:OTTHUMG00000018200 10 10q11.23 oxoglutarate dehydrogenase-like protein-coding OGDHL oxoglutarate dehydrogenase-like O 2-oxoglutarate dehydrogenase complex component E1-like|2-oxoglutarate dehydrogenase-like, mitochondrial|OGDC-E1-like|alpha-ketoglutarate dehydrogenase-like 20121230 -9606 55754 TMEM30A - C6orf67|CDC50A HGNC:16667|MIM:611028|Ensembl:ENSG00000112697|HPRD:15535|Vega:OTTHUMG00000015050 6 6q14.1 transmembrane protein 30A protein-coding TMEM30A transmembrane protein 30A O cell cycle control protein 50A 20121230 -9606 55755 CDK5RAP2 RP11-412P1.1 C48|Cep215|MCPH3 HGNC:18672|MIM:608201|Ensembl:ENSG00000136861|HPRD:09740|Vega:OTTHUMG00000021043 9 9q33.2 CDK5 regulatory subunit associated protein 2 protein-coding CDK5RAP2 CDK5 regulatory subunit associated protein 2 O CDK5 activator-binding protein C48|CDK5 regulatory subunit-associated protein 2|centrosomal protein 215 kDa|centrosome-associated protein 215 20121230 -9606 55756 INTS9 - CPSF2L|INT9|RC74 HGNC:25592|MIM:611352|Ensembl:ENSG00000104299|HPRD:07706|Vega:OTTHUMG00000164030 8 8p21.1 integrator complex subunit 9 protein-coding INTS9 integrator complex subunit 9 O protein related to CPSF subunits of 74 kDa 20121230 -9606 55757 UGGT2 RP11-31K22.2 HUGT2|UGCGL2|UGT2 HGNC:15664|MIM:605898|Ensembl:ENSG00000102595|HPRD:12065|Vega:OTTHUMG00000017230 13 13q32.1 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 O UDP--Glc:glycoprotein glucosyltransferase 2|UDP-Glc:glycoprotein glucosyltransferase 2|UDP-glucose ceramide glucosyltransferase-like 1|UDP-glucose ceramide glucosyltransferase-like 2|UDP-glucose:glycoprotein glucosyltransferase 2 20121230 -9606 55758 RCOR3 - RP11-318L16.1 HGNC:25594|Ensembl:ENSG00000117625|HPRD:08338|Vega:OTTHUMG00000036996 1 1q32.2 REST corepressor 3 protein-coding RCOR3 REST corepressor 3 O - 20121230 -9606 55759 WDR12 - YTM1 HGNC:14098|Ensembl:ENSG00000138442|HPRD:18295|Vega:OTTHUMG00000132855 2 2q33.2 WD repeat domain 12 protein-coding WDR12 WD repeat domain 12 O WD repeat-containing protein 12|ribosome biogenesis protein WDR12 20121230 -9606 55760 DHX32 - DDX32|DHLP1 HGNC:16717|MIM:607960|Ensembl:ENSG00000089876|HPRD:06411|Vega:OTTHUMG00000019238 10 10q26.2 DEAH (Asp-Glu-Ala-His) box polypeptide 32 protein-coding DHX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 O DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32|DEAD/H box 32|DEAD/H helicase-like protein 1|DEAD/H helicase-like protein-1|DEAH box protein 32|huDDX32|putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 20121230 -9606 55761 TTC17 - - HGNC:25596|Ensembl:ENSG00000052841|HPRD:15582|Vega:OTTHUMG00000166398 11 11p11.2 tetratricopeptide repeat domain 17 protein-coding TTC17 tetratricopeptide repeat domain 17 O TPR repeat protein 17|tetratricopeptide repeat protein 17 20121230 -9606 55762 ZNF701 - - HGNC:25597|Ensembl:ENSG00000167562|HPRD:07709 19 19q13.41 zinc finger protein 701 protein-coding ZNF701 zinc finger protein 701 O - 20121230 -9606 55763 EXOC1 BM-012 BM-102|SEC3|SEC3L1|SEC3P HGNC:30380|MIM:607879|Ensembl:ENSG00000090989|HPRD:07615|Vega:OTTHUMG00000102165 4 4q12 exocyst complex component 1 protein-coding EXOC1 exocyst complex component 1 O SEC3-like 1|exocyst complex component Sec3 20121230 -9606 55764 IFT122 - CED|CED1|SPG|WDR10|WDR10p|WDR140 HGNC:13556|MIM:606045|Ensembl:ENSG00000163913|HPRD:06922|Vega:OTTHUMG00000159516 3 3q21 intraflagellar transport 122 homolog (Chlamydomonas) protein-coding IFT122 intraflagellar transport 122 homolog (Chlamydomonas) O WD repeat domain 10|WD repeat-containing protein 10|WD repeat-containing protein 140|intraflagellar transport protein 122 homolog 20121230 -9606 55765 C1orf106 - - HGNC:25599|Ensembl:ENSG00000163362|HPRD:07712|Vega:OTTHUMG00000035789 1 1q32.1 chromosome 1 open reading frame 106 protein-coding C1orf106 chromosome 1 open reading frame 106 O uncharacterized protein C1orf106 20121230 -9606 55766 H2AFJ - H2AJ HGNC:14456|Ensembl:ENSG00000246705|HPRD:13622|Vega:OTTHUMG00000168736 12 12p12.3 H2A histone family, member J protein-coding H2AFJ H2A histone family, member J O H2a/j|histone H2A.J 20121230 -9606 55768 NGLY1 - PNG1|PNGase HGNC:17646|MIM:610661|Ensembl:ENSG00000151092|HPRD:10118|Vega:OTTHUMG00000155600 3 3p24.2 N-glycanase 1 protein-coding NGLY1 N-glycanase 1 O hPNGase|peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase|peptide:N-glycanase 20121230 -9606 55769 ZNF83 - HPF1|ZNF816B HGNC:13158|MIM:194558|Ensembl:ENSG00000167766|HPRD:01935 19 19q13.3 zinc finger protein 83 protein-coding ZNF83 zinc finger protein 83 O zinc finger protein 816B|zinc finger protein HPF1 20121230 -9606 55770 EXOC2 RP11-164H16.2 SEC5|SEC5L1|Sec5p HGNC:24968|Ensembl:ENSG00000112685|HPRD:11544|Vega:OTTHUMG00000137437 6 6p25.3 exocyst complex component 2 protein-coding EXOC2 exocyst complex component 2 O SEC5-like 1|exocyst complex component Sec5 20121230 -9606 55771 PRR11 - - HGNC:25619|Ensembl:ENSG00000068489|HPRD:07726|Vega:OTTHUMG00000179362 17 17q22 proline rich 11 protein-coding PRR11 proline rich 11 O proline-rich protein 11|transcription repressor of MHCII 20121230 -9606 55773 TBC1D23 - NS4ATP1 HGNC:25622|Ensembl:ENSG00000036054|HPRD:07727|Vega:OTTHUMG00000159067 3 3q12.2 TBC1 domain family, member 23 protein-coding TBC1D23 TBC1 domain family, member 23 O HCV non-structural protein 4A-transactivated protein 1|HCV nonstructural protein 4A-transactivated protein 1|TBC1 domain family member 23 20121230 -9606 55775 TDP1 - - HGNC:18884|MIM:607198|Ensembl:ENSG00000042088|HPRD:06226|Vega:OTTHUMG00000171016 14 14q32.11 tyrosyl-DNA phosphodiesterase 1 protein-coding TDP1 tyrosyl-DNA phosphodiesterase 1 O tyr-DNA phosphodiesterase 1 20121230 -9606 55776 SAYSD1 - C6orf64 HGNC:21025|Ensembl:ENSG00000112167|HPRD:12892|Vega:OTTHUMG00000014641 6 6p21.2 SAYSVFN motif domain containing 1 protein-coding SAYSD1 SAYSVFN motif domain containing 1 O SAYSvFN domain-containing protein 1 20121230 -9606 55777 MBD5 - MRD1 HGNC:20444|MIM:611472|Ensembl:ENSG00000204406|HPRD:11295|Vega:OTTHUMG00000150440 2 2q23.1 methyl-CpG binding domain protein 5 protein-coding MBD5 methyl-CpG binding domain protein 5 O methyl-CpG-binding domain protein 5|methyl-CpG-binding protein MBD5 20121230 -9606 55778 ZNF839 - C14orf131 HGNC:20345|Ensembl:ENSG00000022976|HPRD:18532|Vega:OTTHUMG00000171864 14 14q32.31 zinc finger protein 839 protein-coding ZNF839 zinc finger protein 839 O renal carcinoma antigen NY-REN-50 20121230 -9606 55779 WDR52 - - HGNC:25631|Ensembl:ENSG00000206530|HPRD:07734|Vega:OTTHUMG00000159259 3 3q13.2 WD repeat domain 52 protein-coding WDR52 WD repeat domain 52 O WD repeat-containing protein 52 20121230 -9606 55780 C6orf70 RP1-266L20.6 dJ266L20.3 HGNC:21056|Ensembl:ENSG00000130023|HPRD:18697|Vega:OTTHUMG00000016067 6 6q27 chromosome 6 open reading frame 70 protein-coding C6orf70 chromosome 6 open reading frame 70 O transmembrane protein C6orf70 20121230 -9606 55781 RIOK2 - RIO2 HGNC:18999|Ensembl:ENSG00000058729|HPRD:10193|Vega:OTTHUMG00000128723 5 5q15 RIO kinase 2 protein-coding RIOK2 RIO kinase 2 O serine/threonine-protein kinase RIO2 20121230 -9606 55783 FTSJD1 - AFT|MTr2 HGNC:25635|Ensembl:ENSG00000180917|HPRD:08560|Vega:OTTHUMG00000137587 16 16q22.2 FtsJ methyltransferase domain containing 1 protein-coding FTSJD1 FtsJ methyltransferase domain containing 1 O adrift homolog|ftsJ methyltransferase domain-containing protein 1|protein adrift homolog 20121230 -9606 55784 MCTP2 - - HGNC:25636|Ensembl:ENSG00000140563|HPRD:07738|Vega:OTTHUMG00000171751 15 15q26.2 multiple C2 domains, transmembrane 2 protein-coding MCTP2 multiple C2 domains, transmembrane 2 O multiple C2 and transmembrane domain-containing protein 2|multiple C2-domains with two transmembrane regions 2 1 20121230 -9606 55785 FGD6 - ZFYVE24 HGNC:21740|MIM:613520|Ensembl:ENSG00000180263|HPRD:16892|Vega:OTTHUMG00000170133 12 12q22 FYVE, RhoGEF and PH domain containing 6 protein-coding FGD6 FYVE, RhoGEF and PH domain containing 6 O FYVE, RhoGEF and PH domain-containing protein 6|zinc finger FYVE domain-containing protein 24 20121230 -9606 55786 ZNF415 - - HGNC:20636|Ensembl:ENSG00000170954|HPRD:18340 19 19q13.42 zinc finger protein 415 protein-coding ZNF415 zinc finger protein 415 O - 20121230 -9606 55787 TXLNG RP11-716A19.4 CXorf15|ELRG|FIAT|LSR5 HGNC:18578|MIM:300677|Ensembl:ENSG00000086712|HPRD:06478|Vega:OTTHUMG00000021196 X Xp22.2 taxilin gamma protein-coding TXLNG taxilin gamma O environmental LPS-responding|environmental lipopolysaccharide-responding gene protein|factor inhibiting ATF4-mediated transcription|factor inhibiting activating transcription factor 4 (ATF4)-mediated transcription|gamma-taxilin|lipopolysaccharide specific response-5 protein|lipopolysaccharide-specific response protein 5 20121230 -9606 55788 LMBRD1 BM-021 C6orf209|LMBD1|MAHCF|NESI HGNC:23038|MIM:612625|Ensembl:ENSG00000168216|HPRD:12877|Vega:OTTHUMG00000014985 6 6q13 LMBR1 domain containing 1 protein-coding LMBRD1 LMBR1 domain containing 1 O HDAg-L-interacting protein NESI|hepatitis delta antigen-L interacting protein|liver regeneration p-53 related protein|nuclear export signal-interacting protein|probable lysosomal cobalamin transporter 20121230 -9606 55789 DEPDC1B - BRCC3|XTP1 HGNC:24902|Ensembl:ENSG00000035499|HPRD:16794|Vega:OTTHUMG00000097083 5 5q12.1 DEP domain containing 1B protein-coding DEPDC1B DEP domain containing 1B O DEP domain-containing protein 1B|HBV X-transactivated gene 8 protein|HBV XAg-transactivated protein 8|HBxAg transactivated protein 1|breast cancer cell 3 20121230 -9606 55790 CSGALNACT1 UNQ656/PRO1287 CSGalNAcT-1|ChGn|beta4GalNAcT HGNC:24290|Ensembl:ENSG00000147408|HPRD:13114|Vega:OTTHUMG00000130827 8 8p21.3 chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 O beta4GalNAcT-1|chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1|chondroitin beta1,4 N-acetylgalactosaminyltransferase 20121230 -9606 55791 LRIF1 - C1orf103|RIF1|RP11-96K19.1 HGNC:30299|Ensembl:ENSG00000121931|HPRD:17975|Vega:OTTHUMG00000011913 1 1p13.3 ligand dependent nuclear receptor interacting factor 1 protein-coding LRIF1 ligand dependent nuclear receptor interacting factor 1 O ligand-dependent nuclear receptor-interacting factor 1|receptor interacting factor 1|receptor-interacting factor 1 20121230 -9606 55793 FAM63A - RP11-316M1.5 HGNC:25648|Ensembl:ENSG00000143409|HPRD:07746|Vega:OTTHUMG00000035061 1 1q21.3 family with sequence similarity 63, member A protein-coding FAM63A family with sequence similarity 63, member A O protein FAM63A 20121230 -9606 55794 DDX28 - MDDX28 HGNC:17330|MIM:607618|Ensembl:ENSG00000182810|HPRD:06357|Vega:OTTHUMG00000137549 16 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 protein-coding DDX28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 O DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 28|mitochondrial DEAD box protein 28|mitochondrial DEAD-box polypeptide 28|probable ATP-dependent RNA helicase DDX28 20121230 -9606 55795 PCID2 RP11-98F14.6 F10 HGNC:25653|MIM:613713|Ensembl:ENSG00000126226|HPRD:07749|Vega:OTTHUMG00000017385 13 13q34 PCI domain containing 2 protein-coding PCID2 PCI domain containing 2 O CSN12-like protein|PCI domain-containing protein 2 20121230 -9606 55796 MBNL3 RP5-842K24.3 CHCR|MBLX|MBLX39|MBXL HGNC:20564|MIM:300413|Ensembl:ENSG00000076770|HPRD:02329|Vega:OTTHUMG00000022426 X Xq26.2 muscleblind-like splicing regulator 3 protein-coding MBNL3 muscleblind-like splicing regulator 3 O Cys3His CCG1-required protein|muscleblind-like 3|muscleblind-like X-linked protein|muscleblind-like protein 3 20121230 -9606 55798 METTL2B UNQ6168 METL|METTL2|METTL2A|PSENIP1 HGNC:18272|MIM:607846|Ensembl:ENSG00000165055|HPRD:09705|Vega:OTTHUMG00000143738 7 7q32.1 methyltransferase like 2B protein-coding METTL2B methyltransferase like 2B O methyltransferase-like protein 2B 20121230 -9606 55799 CACNA2D3 - HSA272268 HGNC:15460|MIM:606399|Ensembl:ENSG00000157445|HPRD:05907|Vega:OTTHUMG00000158580 3 3p21.1 calcium channel, voltage-dependent, alpha 2/delta subunit 3 protein-coding CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 O calcium channel alpha2-delta3 subunit|calcium channel, voltage-dependent, alpha 2/delta 3 subunit|voltage-dependent calcium channel subunit alpha-2/delta-3|voltage-gated calcium channel subunit alpha-2/delta-3 20121230 -9606 55800 SCN3B - HSA243396|SCNB3 HGNC:20665|MIM:608214|Ensembl:ENSG00000166257|HPRD:10497|Vega:OTTHUMG00000166006 11 11q23.3 sodium channel, voltage-gated, type III, beta subunit protein-coding SCN3B sodium channel, voltage-gated, type III, beta subunit O sodium channel subunit beta-3|voltage-gated sodium channel beta-3 subunit 20121230 -9606 55801 IL26 - AK155|IL-26 HGNC:17119|MIM:605679|Ensembl:ENSG00000111536|HPRD:16140|Vega:OTTHUMG00000169114 12 12q15 interleukin 26 protein-coding IL26 interleukin 26 O interleukin-26 20121230 -9606 55802 DCP1A - HSA275986|Nbla00360|SMAD4IP1|SMIF HGNC:18714|MIM:607010|HPRD:06113 3 3p21.1 DCP1 decapping enzyme homolog A (S. cerevisiae) protein-coding DCP1A DCP1 decapping enzyme homolog A (S. cerevisiae) O Smad4-interacting transcriptional co-activator|decapping enzyme hDcp1a|mRNA-decapping enzyme 1A|putative protein product of Nbla00360|transcription factor SMIF 20121230 -9606 55803 ADAP2 - CENTA2|HSA272195|cent-b HGNC:16487|MIM:608635|Ensembl:ENSG00000184060|HPRD:16357|Vega:OTTHUMG00000132868 17 17q11.2 ArfGAP with dual PH domains 2 protein-coding ADAP2 ArfGAP with dual PH domains 2 O arf-GAP with dual PH domain-containing protein 2|centaurin beta|centaurin, alpha 2|centaurin-alpha 2 protein|centaurin-alpha-2|cnt-a2 20121230 -9606 55805 LRP2BP - - HGNC:25434|Ensembl:ENSG00000109771|HPRD:10911|Vega:OTTHUMG00000160460 4 4q35.1 LRP2 binding protein protein-coding LRP2BP LRP2 binding protein O LRP2-binding protein|megBP|megalin-binding protein 20121230 -9606 55806 HR - ALUNC|AU|HSA277165|MUHH|MUHH1 HGNC:5172|MIM:602302|Ensembl:ENSG00000168453|HPRD:03808|Vega:OTTHUMG00000097089 8 8p21.2 hair growth associated protein-coding HR hair growth associated O hairless homolog|protein hairless 20121230 -9606 55808 ST6GALNAC1 UNQ543/PRO848 HSY11339|SIAT7A|ST6GalNAcI|STYI HGNC:23614|MIM:610138|Ensembl:ENSG00000070526|HPRD:15340|Vega:OTTHUMG00000180369 17 17q25.1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding ST6GALNAC1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 O GalNAc alpha-2, 6-sialyltransferase I, long form|SIAT7-A|ST6GalNAc I|alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1|galNAc alpha-2,6-sialyltransferase I|sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) A|sialyltransferase 7A 20121230 -9606 55809 TRERF1 - BCAR2|HSA277276|RAPA|RP1-139D8.5|TReP-132|dJ139D8.5 HGNC:18273|MIM:610322|Ensembl:ENSG00000124496|HPRD:11647|Vega:OTTHUMG00000014698 6 6p21.1-p12.1 transcriptional regulating factor 1 protein-coding TRERF1 transcriptional regulating factor 1 O breast cancer anti-estrogen resistance 2|rapa-1|rapa-2|transcriptional regulating protein 132|transcriptional-regulating factor 1|transcriptional-regulating protein 132|zinc finger protein rapa|zinc finger transcription factor TReP-132 20121230 -9606 55810 FOXJ2 - FHX HGNC:24818|Ensembl:ENSG00000065970|HPRD:17014|Vega:OTTHUMG00000168526 12 12p13.31 forkhead box J2 protein-coding FOXJ2 forkhead box J2 O FOXJ2 forkhead factor|fork head homologous X|forkhead box protein J2 20121230 -9606 55811 ADCY10 - HCA2|RP1-313L4.2|SAC|SACI|Sacy HGNC:21285|MIM:605205|Ensembl:ENSG00000143199|HPRD:05549|Vega:OTTHUMG00000034573 1 1q24 adenylate cyclase 10 (soluble) protein-coding ADCY10 adenylate cyclase 10 (soluble) O 3',5'-cyclic AMP synthetase|AH-related protein|ATP pyrophosphate-lyase|adenylate cyclase type 10|germ cell soluble adenylyl cyclase|hsAC|testicular soluble adenylyl cyclase (SAC) 20121230 -9606 55812 SPATA7 - HSD-3.1|HSD3|LCA3 HGNC:20423|MIM:609868|Ensembl:ENSG00000042317|HPRD:15431|Vega:OTTHUMG00000170744 14 14q31.3 spermatogenesis associated 7 protein-coding SPATA7 spermatogenesis associated 7 O spermatogenesis-associated protein 7|spermatogenesis-associated protein HSD3 20121230 -9606 55813 UTP6 - C17orf40|HCA66 HGNC:18279|Ensembl:ENSG00000108651|HPRD:11020|Vega:OTTHUMG00000132815 17 17q11.2 UTP6, small subunit (SSU) processome component, homolog (yeast) protein-coding UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) O U3 small nucleolar RNA-associated protein 6 homolog|hepatocellular carcinoma associated antigen 66|hepatocellular carcinoma-associated antigen 66|multiple hat domains protein 20121230 -9606 55814 BDP1 - HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR HGNC:13652|MIM:607012|Ensembl:ENSG00000145734|HPRD:06114|Vega:OTTHUMG00000162506 5 5q13 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein-coding BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB O RNA polymerase III transcription initiation factor B''|TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1|transcription factor IIIB 150|transcription factor TFIIIB component B'' homolog|transcription factor-like nuclear regulator 20121230 -9606 55815 TSNAXIP1 - TXI1 HGNC:18586|MIM:607720|Ensembl:ENSG00000102904|HPRD:09656|Vega:OTTHUMG00000137545 16 16q22.1 translin-associated factor X interacting protein 1 protein-coding TSNAXIP1 translin-associated factor X interacting protein 1 O translin-associated factor X-interacting protein 1|trax-interacting protein 1 20121230 -9606 55816 DOK5 - C20orf180 HGNC:16173|MIM:608334|Ensembl:ENSG00000101134|HPRD:16317|Vega:OTTHUMG00000032778 20 20q13.2 docking protein 5 protein-coding DOK5 docking protein 5 O IRS-6|IRS6|downstream of tyrosine kinase 5|insulin receptor substrate 6 20121230 -9606 55818 KDM3A - JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA HGNC:20815|MIM:611512|Ensembl:ENSG00000115548|HPRD:11054|Vega:OTTHUMG00000130204 2 2p11.2 lysine (K)-specific demethylase 3A protein-coding KDM3A lysine (K)-specific demethylase 3A O jmjC domain-containing histone demethylation protein 2A|jumonji C domain-containing histone demethylase 2A|jumonji domain containing 1|jumonji domain containing 1A|jumonji domain-containing protein 1A|lysine-specific demethylase 3A|testis-specific protein A 20121230 -9606 55819 RNF130 - G1RZFP|GOLIATH|GP HGNC:18280|Ensembl:ENSG00000113269|HPRD:11504|Vega:OTTHUMG00000130909 5 5q35.3 ring finger protein 130 protein-coding RNF130 ring finger protein 130 O E3 ubiquitin-protein ligase RNF130|H-Goliath|g1-related zinc finger protein|goliath homolog 20121230 -9606 55821 ALLC - ALC HGNC:17377|MIM:612396|Ensembl:ENSG00000151360|HPRD:10642|Vega:OTTHUMG00000151485 2 2q35 allantoicase protein-coding ALLC allantoicase O allantoate amidinohydrolase|probable allantoicase 20121230 -9606 55823 VPS11 PP3476 END1|PEP5|RNF108|hVPS11 HGNC:14583|MIM:608549|HPRD:12258 11 11q23 vacuolar protein sorting 11 homolog (S. cerevisiae) protein-coding VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) O RING finger protein 108|vacuolar protein sorting protein 11|vacuolar protein sorting-associated protein 11 homolog 20121230 -9606 55824 PAG1 - CBP|PAG HGNC:30043|MIM:605767|Ensembl:ENSG00000076641|HPRD:05772|HPRD:16944|Vega:OTTHUMG00000164592 8 8q21.13 phosphoprotein associated with glycosphingolipid microdomains 1 protein-coding PAG1 phosphoprotein associated with glycosphingolipid microdomains 1 O Csk-binding protein|phosphoprotein associated with glycosphingolipid-enriched microdomains 1|transmembrane adapter protein PAG|transmembrane adaptor protein PAG|transmembrane phosphoprotein Cbp 20121230 -9606 55825 PECR PRO1004 DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP HGNC:18281|MIM:605843|Ensembl:ENSG00000115425|HPRD:09320|Vega:OTTHUMG00000154825 2 2q35 peroxisomal trans-2-enoyl-CoA reductase protein-coding PECR peroxisomal trans-2-enoyl-CoA reductase O 2,4-dienoyl-CoA reductase-related protein|DCR-RP|pVI-ARL|putative short chain alcohol dehydrogenase|short chain dehydrogenase/reductase family 29C, member 1 20121230 -9606 55827 DCAF6 RP4-745I14.1 1200006M05Rik|ARCAP|IQWD1|MSTP055|NRIP|PC326 HGNC:30002|MIM:610494|Ensembl:ENSG00000143164|HPRD:17156|Vega:OTTHUMG00000034572 1 1q24.2 DDB1 and CUL4 associated factor 6 protein-coding DCAF6 DDB1 and CUL4 associated factor 6 O DDB1- and CUL4-associated factor 6|IQ motif and WD repeat-containing protein 1|IQ motif and WD repeats 1|androgen receptor complex-associated protein|nuclear receptor interaction protein 20121230 -9606 55829 VIMP AD-015 ADO15|SBBI8|SELS|SEPS1 HGNC:30396|MIM:607918|Ensembl:ENSG00000131871|HPRD:12133|Vega:OTTHUMG00000166441 15 15q26.3 VCP-interacting membrane protein protein-coding VIMP VCP-interacting membrane protein O selenoprotein S 20121230 -9606 55830 GLT8D1 AD-017 MSTP139 HGNC:24870|Ensembl:ENSG00000016864|HPRD:12423|Vega:OTTHUMG00000158759 3 3p21.1 glycosyltransferase 8 domain containing 1 protein-coding GLT8D1 glycosyltransferase 8 domain containing 1 O glycosyltransferase 8 domain-containing protein 1|glycosyltransferase AD-017 20121230 -9606 55831 EMC3 - POB|TMEM111 HGNC:23999|Ensembl:ENSG00000125037|HPRD:17426|Vega:OTTHUMG00000128652 3 3p25.3 ER membrane protein complex subunit 3 protein-coding EMC3 ER membrane protein complex subunit 3 O 30 kDa protein|partial optokinetic response b|transmembrane protein 111 20121230 -9606 55832 CAND1 - TIP120|TIP120A HGNC:30688|MIM:607727|Ensembl:ENSG00000111530|HPRD:06983|Vega:OTTHUMG00000169060 12 12q14 cullin-associated and neddylation-dissociated 1 protein-coding CAND1 cullin-associated and neddylation-dissociated 1 O TBP interacting protein|TBP-interacting protein 120A|TBP-interacting protein of 120 kDa A|cullin-associated NEDD8-dissociated protein 1|cullin-associated and neddylation-dissociated protein 1|p120 CAND1 20121230 -9606 55833 UBAP2 RP11-176F3.6 UBAP-2|bA176F3.5 HGNC:14185|Ensembl:ENSG00000137073|HPRD:06748|Vega:OTTHUMG00000000427 9 9p13.3 ubiquitin associated protein 2 protein-coding UBAP2 ubiquitin associated protein 2 O AD-012 protein|ubiquitin-associated protein 2 20121230 -9606 55835 CENPJ RP11-756A22.2 BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 HGNC:17272|MIM:609279|Ensembl:ENSG00000151849|HPRD:09876|Vega:OTTHUMG00000016595 13 13q12.12 centromere protein J protein-coding CENPJ centromere protein J O LAG-3-associated protein|LYST-interacting protein 1|LYST-interacting protein LIP1|LYST-interacting protein LIP7|centrosomal P4.1-associated protein 20121230 -9606 55837 EAPP BM-036 BM036|C14orf11 HGNC:19312|MIM:609486|Ensembl:ENSG00000129518|HPRD:12631|Vega:OTTHUMG00000170621 14 14q13.1 E2F-associated phosphoprotein protein-coding EAPP E2F-associated phosphoprotein O - 20121230 -9606 55839 CENPN BM-309 BM039|C16orf60|CENP-N|ICEN32 HGNC:30873|MIM:611509|Ensembl:ENSG00000166451|HPRD:12528|Vega:OTTHUMG00000137628 16 16q23.2 centromere protein N protein-coding CENPN centromere protein N O interphase centromere complex protein 32 20121230 -9606 55840 EAF2 BM-040 BM040|TRAITS|U19 HGNC:23115|MIM:607659|Ensembl:ENSG00000145088|HPRD:09634|Vega:OTTHUMG00000159424 3 3q13.33 ELL associated factor 2 protein-coding EAF2 ELL associated factor 2 O ELL-associated factor 2|testosterone regulated apoptosis inducer and tumor suppressor|testosterone-regulated apoptosis inducer and tumor suppressor protein 20121230 -9606 55841 WWC3 - BM042 HGNC:29237|Ensembl:ENSG00000047644|HPRD:11136|Vega:OTTHUMG00000021123 X Xp22.32 WWC family member 3 protein-coding WWC3 WWC family member 3 O protein WWC3 20121230 -9606 55843 ARHGAP15 BM-024 BM046 HGNC:21030|MIM:610578|Ensembl:ENSG00000075884|HPRD:06447|Vega:OTTHUMG00000131845 2 2q22.2-q22.3 Rho GTPase activating protein 15 protein-coding ARHGAP15 Rho GTPase activating protein 15 O rho GTPase-activating protein 15|rho-type GTPase-activating protein 15 20121230 -9606 55844 PPP2R2D - MDS026 HGNC:23732|MIM:613992|Ensembl:ENSG00000175470|HPRD:15172|Vega:OTTHUMG00000019277 10 10q26.3 protein phosphatase 2, regulatory subunit B, delta protein-coding PPP2R2D protein phosphatase 2, regulatory subunit B, delta O PP2A subunit B isoform B55-delta|PP2A subunit B isoform PR55-delta|PP2A subunit B isoform R2-delta|PP2A subunit B isoform delta|protein phosphatase 2, regulatory subunit B, delta isoform|serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform 20121230 -9606 55845 BRK1 HSPC300 C3orf10|MDS027|hHBrk1 HGNC:23057|MIM:611183|Ensembl:ENSG00000254999|HPRD:12818|Vega:OTTHUMG00000155400 3 3p25.3 BRICK1, SCAR/WAVE actin-nucleating complex subunit protein-coding BRK1 BRICK1, SCAR/WAVE actin-nucleating complex subunit O BRICK1, SCAR/WAVE actin-nucleating complex subunit, homolog|haematopoietic stem/progenitor cell protein 300|probable protein BRICK1|protein BRICK1 20121230 -9606 55846 ITFG2 - MDS028 HGNC:30879|Ensembl:ENSG00000111203|HPRD:14379|Vega:OTTHUMG00000130617 12 12p13.33 integrin alpha FG-GAP repeat containing 2 protein-coding ITFG2 integrin alpha FG-GAP repeat containing 2 O integrin-alpha FG-GAP repeat-containing protein 2 20121230 -9606 55847 CISD1 MDS029 C10orf70|ZCD1|mitoNEET HGNC:30880|MIM:611932|Ensembl:ENSG00000122873|HPRD:12587|Vega:OTTHUMG00000018266 10 10q21.1 CDGSH iron sulfur domain 1 protein-coding CISD1 CDGSH iron sulfur domain 1 O CDGSH iron sulfur domain-containing protein 1|CDGSH iron-sulfur domain-containing protein 1|zinc finger CDGSH-type domain 1|zinc finger, CDGSH-type domain 1 20121230 -9606 55848 PLGRKT AD025 C9orf46|MDS030|PLG-RKT|Plg-R(KT) HGNC:23633|Ensembl:ENSG00000107020|HPRD:12961|Vega:OTTHUMG00000019501 9 9p24.1 plasminogen receptor, C-terminal lysine transmembrane protein protein-coding PLGRKT plasminogen receptor, C-terminal lysine transmembrane protein O 5033414D02Rik|plasminogen receptor (KT)|plasminogen receptor with a C-terminal lysine|transmembrane protein C9orf46 20121230 -9606 55850 USE1 MDS032 P31|SLT1 HGNC:30882|MIM:610675|Ensembl:ENSG00000053501|HPRD:11299 19 19p13.11 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein-coding USE1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) O Q-SNARE|SNARE-like tail-anchored protein 1 homolog|USE1-like protein|protein p31|putative MAPK activating protein PM26|putative MAPK-activating protein PM26|vesicle transport protein USE1 20121230 -9606 55851 PSENEN MDS033 MSTP064|PEN-2|PEN2 HGNC:30100|MIM:607632|Ensembl:ENSG00000205155|HPRD:06362|Vega:OTTHUMG00000182067 19 19q13.12 presenilin enhancer 2 homolog (C. elegans) protein-coding PSENEN presenilin enhancer 2 homolog (C. elegans) O gamma-secretase subunit PEN-2|hematopoietic stem/progenitor cells protein MDS033 20121230 -9606 55852 TEX2 - HT008|TMEM96 HGNC:30884|Ensembl:ENSG00000136478|HPRD:13716|Vega:OTTHUMG00000178881 17 17q23.3 testis expressed 2 protein-coding TEX2 testis expressed 2 O testis expressed sequence 2|testis-expressed sequence 2 protein|transmembrane protein 96 20121230 -9606 55853 IDI2-AS1 HT009 C10orf110|IDI2-AS HGNC:30885|HPRD:12561 10 10p15.3 IDI2 antisense RNA 1 miscRNA IDI2-AS1 IDI2 antisense RNA 1 O - 20121230 -9606 55854 ZC3H15 HSPC303 HT010|LEREPO4|MSTP012 HGNC:29528|Ensembl:ENSG00000065548|HPRD:13988|Vega:OTTHUMG00000154251 2 2q32.1 zinc finger CCCH-type containing 15 protein-coding ZC3H15 zinc finger CCCH-type containing 15 O DRG family-regulatory protein 1|likely ortholog of mouse immediate early response erythropoietin 4|zinc finger CCCH domain-containing protein 15 20121230 -9606 55855 FAM45B - HT011 HGNC:30886|HPRD:06592 X Xq26.1 family with sequence similarity 45, member A pseudogene pseudo FAM45B family with sequence similarity 45, member B (pseudogene) O - 20121230 -9606 55856 ACOT13 HT012 PNAS-27|THEM2 HGNC:20999|Ensembl:ENSG00000112304|HPRD:07158|Vega:OTTHUMG00000014359 6 6p22.3 acyl-CoA thioesterase 13 protein-coding ACOT13 acyl-CoA thioesterase 13 O acyl-coenzyme A thioesterase 13|hypothalamus protein HT012|thioesterase superfamily member 2 20121230 -9606 55857 PLK1S1 HT013 C20orf19|Kiz|Kizuna|NCRNA00153 HGNC:15865|HPRD:12760 20 20p11.23 polo-like kinase 1 substrate 1 protein-coding PLK1S1 polo-like kinase 1 substrate 1 O centrosomal protein kizuna 20121230 -9606 55858 TMEM165 - CDG2K|FT27|GDT1|TMPT27|TPARL HGNC:30760|MIM:614726|Ensembl:ENSG00000134851|HPRD:18216|Vega:OTTHUMG00000128735 4 4q12 transmembrane protein 165 protein-coding TMEM165 transmembrane protein 165 O TPA regulated locus|transmembrane protein PT27|transmembrane protein TPARL 20121230 -9606 55859 BEX1 RP1-198P4.1 BEX2|HBEX2|HGR74-h HGNC:1036|MIM:300690|Ensembl:ENSG00000133169|HPRD:06460|Vega:OTTHUMG00000022708 X Xq22.1|Xq22 brain expressed, X-linked 1 protein-coding BEX1 brain expressed, X-linked 1 O brain-expressed X-linked protein 1|ovarian granulosa cell 13.0 kDa protein hGR74|protein BEX1 20121230 -9606 55860 ACTR10 - ACTR11|Arp11|HARP11 HGNC:17372|Ensembl:ENSG00000131966|HPRD:12420|Vega:OTTHUMG00000171049 14 14q23.1 actin-related protein 10 homolog (S. cerevisiae) protein-coding ACTR10 actin-related protein 10 homolog (S. cerevisiae) O actin-related protein 10|actin-related protein 11 20121230 -9606 55861 DBNDD2 RP3-453C12.9 C20orf35|CK1BP|HSMNP1 HGNC:15881|MIM:611453|Ensembl:ENSG00000244274|HPRD:12763|Vega:OTTHUMG00000032576 20 20q13.12 dysbindin (dystrobrevin binding protein 1) domain containing 2 protein-coding DBNDD2 dysbindin (dystrobrevin binding protein 1) domain containing 2 O SCF apoptosis response protein 1|casein kinase-1 binding protein|dysbindin domain-containing protein 2 20121230 -9606 55862 ECHDC1 RP3-351K20.2 MMCD|dJ351K20.2 HGNC:21489|MIM:612136|Ensembl:ENSG00000093144|HPRD:13260|Vega:OTTHUMG00000015523 6 6q22.33 enoyl CoA hydratase domain containing 1 protein-coding ECHDC1 enoyl CoA hydratase domain containing 1 O enoyl Coenzyme A hydratase domain containing 1|enoyl-CoA hydratase domain-containing protein 1|ethylmalonyl-CoA decarboxylase|methylmalonyl-CoA decarboxylase 20121230 -9606 55863 TMEM126B HT007 - HGNC:30883|Ensembl:ENSG00000171204|HPRD:13715|Vega:OTTHUMG00000166974 11 11q14.1 transmembrane protein 126B protein-coding TMEM126B transmembrane protein 126B O - 20121230 -9606 55867 SLC22A11 - OAT4|hOAT4 HGNC:18120|MIM:607097|Ensembl:ENSG00000168065|HPRD:06161|Vega:OTTHUMG00000045142 11 11q13.1 solute carrier family 22 (organic anion/urate transporter), member 11 protein-coding SLC22A11 solute carrier family 22 (organic anion/urate transporter), member 11 O organic anion transporter 4|solute carrier family 22 (organic anion/cation transporter), member 11|solute carrier family 22 member 11 20121230 -9606 55869 HDAC8 CDA07 CDLS5|HD8|HDACL1|MRXS6|RPD3|WTS HGNC:13315|MIM:300269|Ensembl:ENSG00000147099|HPRD:02227|Vega:OTTHUMG00000021814 X Xq13 histone deacetylase 8 protein-coding HDAC8 histone deacetylase 8 O histone deacetylase-like 1 20121230 -9606 55870 ASH1L - ASH1|ASH1L1|KMT2H HGNC:19088|MIM:607999|Ensembl:ENSG00000116539|HPRD:06416|Vega:OTTHUMG00000014011 1 1q22 ash1 (absent, small, or homeotic)-like (Drosophila) protein-coding ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) O ASH1-like protein|absent small and homeotic disks protein 1 homolog|histone-lysine N-methyltransferase ASH1L|lysine N-methyltransferase 2H|probable histone-lysine N-methyltransferase ASH1L 20121230 -9606 55871 CBWD1 RP11-143M1.6 COBP HGNC:17134|MIM:611078|Ensembl:ENSG00000172785|HPRD:16686|Vega:OTTHUMG00000019425 9 9p24.3 COBW domain containing 1 protein-coding CBWD1 COBW domain containing 1 O COBW domain-containing protein 1|COBW-like protein|NPC-A-6 COBW domain-containing protein 1|cobalamin synthase W domain-containing protein 1|cobalamin synthetase W domain-containing protein 1 20121230 -9606 55872 PBK - CT84|Nori-3|SPK|TOPK HGNC:18282|MIM:611210|Ensembl:ENSG00000168078|HPRD:17822|Vega:OTTHUMG00000102113 8 8p21.2 PDZ binding kinase protein-coding PBK PDZ binding kinase O MAPKK-like protein kinase|PDZ-binding kinase|T-LAK cell-originated protein kinase|cancer/testis antigen 84|lymphokine-activated killer T-cell-originated protein kinase|serine/threonine protein kinase|spermatogenesis-related protein kinase 20121230 -9606 55876 GSDMB PP4052 GSDML|PRO2521 HGNC:23690|MIM:611221|Ensembl:ENSG00000073605|HPRD:17082|Vega:OTTHUMG00000133248 17 17q12 gasdermin B protein-coding GSDMB gasdermin B O gasdermin-B|gasdermin-like protein 20121230 -9606 55879 GABRQ - THETA HGNC:14454|MIM:300349|Ensembl:ENSG00000147402|HPRD:02284|Vega:OTTHUMG00000022649 X Xq28 gamma-aminobutyric acid (GABA) A receptor, theta protein-coding GABRQ gamma-aminobutyric acid (GABA) A receptor, theta O GABA(A) receptor subunit theta|GABA(A) receptor, theta|GABA-A receptor theta subunit|gamma-aminobutyric acid (GABA) receptor, theta|gamma-aminobutyric acid receptor subunit theta 20121230 -9606 55884 WSB2 - SBA2 HGNC:19222|Ensembl:ENSG00000176871|HPRD:18305|Vega:OTTHUMG00000168885 12 12q24.23 WD repeat and SOCS box containing 2 protein-coding WSB2 WD repeat and SOCS box containing 2 O CS box-containing WD protein|WD repeat and SOCS box containing protein 2|WD repeat and SOCS box-containing 2|WD repeat and SOCS box-containing protein 2|WSB-2 20121230 -9606 55885 LMO3 - RBTN3|RBTNL2|RHOM3|Rhom-3 HGNC:6643|MIM:180386|Ensembl:ENSG00000048540|HPRD:11832|Vega:OTTHUMG00000168837 12 12p12.3 LIM domain only 3 (rhombotin-like 2) protein-coding LMO3 LIM domain only 3 (rhombotin-like 2) O LIM domain only protein 3|neuronal-specific transcription factor DAT1|rhombotin-3 20121230 -9606 55888 ZNF167 - ZFP|ZKSCAN7|ZNF448|ZNF64 HGNC:12955|Ensembl:ENSG00000196345|HPRD:15744|Vega:OTTHUMG00000133094 3 3p21.32 zinc finger protein 167 protein-coding ZNF167 zinc finger protein 167 O zinc finger protein 448|zinc finger protein 64|zinc finger protein with KRAB and SCAN domains 7 20121230 -9606 55889 GOLGA6B - GOLGA|GOLGA6D HGNC:32205|Ensembl:ENSG00000215186|HPRD:17047|Vega:OTTHUMG00000133511 15 15q24.1 golgin A6 family, member B protein-coding GOLGA6B golgin A6 family, member B O Golgin subfamily A member 6B|Putative golgin subfamily A member 6D|golgi autoantigen, golgin subfamily a, 6B|golgin-like protein|putative golgin subfamily A member 6B 20121230 -9606 55890 GPRC5C PSEC0087 RAIG-3|RAIG3 HGNC:13309|MIM:605949|Ensembl:ENSG00000170412|HPRD:16178|Vega:OTTHUMG00000067613 17 17q25 G protein-coupled receptor, family C, group 5, member C protein-coding GPRC5C G protein-coupled receptor, family C, group 5, member C O G-protein coupled receptor family C group 5 member C|orphan G-protein coupled receptor|retinoic acid responsive gene protein|retinoic acid-induced gene 3 protein 20121230 -9606 55891 LENEP - LEP503 HGNC:14429|MIM:607377|Ensembl:ENSG00000163352|HPRD:09569|Vega:OTTHUMG00000037417 1 1q22 lens epithelial protein protein-coding LENEP lens epithelial protein O lens epithelial cell protein LEP503 20121230 -9606 55892 MYNN SBBIZ1 OSZF|ZBTB31|ZNF902 HGNC:14955|MIM:606042|Ensembl:ENSG00000085274|HPRD:06920 3 3q26.2 myoneurin protein-coding MYNN myoneurin O zinc finger and BTB domain-containing protein 31|zinc finger protein with BTB/POZ domain 20121230 -9606 55893 ZNF395 - HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 HGNC:18737|MIM:609494|Ensembl:ENSG00000186918|HPRD:11711|Vega:OTTHUMG00000102137 8 8p21.1 zinc finger protein 395 protein-coding ZNF395 zinc finger protein 395 O HD gene regulatory region-binding protein 2|HD-regulating factor 2|Huntington's disease gene regulatory region-binding protein 2|huntington disease gene regulatory region-binding protein 2|papillomavirus regulatory factor 1|papillomavirus regulatory factor PRF-1|papillomavirus-binding factor 20121230 -9606 55894 DEFB103B - BD-3|DEFB103|DEFB3|HBD3|HBP3 HGNC:31702|MIM:606611|Ensembl:ENSG00000177243|HPRD:05968|Vega:OTTHUMG00000129313 8 8p23 defensin, beta 103B protein-coding DEFB103B defensin, beta 103B O beta-defensin 103|beta-defensin 3|defensin, beta 103|defensin-like protein 20121230 -9606 55897 MESP1 - bHLHc5 HGNC:29658|MIM:608689|Ensembl:ENSG00000166823|HPRD:10070|Vega:OTTHUMG00000149810 15 15q26.1 mesoderm posterior 1 homolog (mouse) protein-coding MESP1 mesoderm posterior 1 homolog (mouse) O class C basic helix-loop-helix protein 5|mesoderm posterior protein 1 20121230 -9606 55898 UNC45A - GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1 HGNC:30594|MIM:611219|Ensembl:ENSG00000140553|HPRD:18070|Vega:OTTHUMG00000141261 15 15q26.1 unc-45 homolog A (C. elegans) protein-coding UNC45A unc-45 homolog A (C. elegans) O UNC-45A|general cell UNC45|protein unc-45 homolog A|smooth muscle cell associated protein-1|smooth muscle cell-associated protein 1 20121230 -9606 55900 ZNF302 - HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 HGNC:13848|Ensembl:ENSG00000089335|HPRD:15765|Vega:OTTHUMG00000163329 19 19q13.11 zinc finger protein 302 protein-coding ZNF302 zinc finger protein 302 O zinc finger protein 327 20121230 -9606 55901 THSD1 RP11-245D16.1 TMTSP|UNQ3010 HGNC:17754|Ensembl:ENSG00000136114|HPRD:18180|Vega:OTTHUMG00000016963 13 13q14.3 thrombospondin, type I, domain containing 1 protein-coding THSD1 thrombospondin, type I, domain containing 1 O 4833423O18Rik|thrombospondin type-1 domain-containing protein 1|thrombospondin, type I, domain 1|transmembrane molecule with thrombospondin module 20121230 -9606 55902 ACSS2 RP5-1161H23.2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 HGNC:15814|MIM:605832|Ensembl:ENSG00000131069|Vega:OTTHUMG00000032317 20 20q11.22 acyl-CoA synthetase short-chain family member 2 protein-coding ACSS2 acyl-CoA synthetase short-chain family member 2 O acetate thiokinase|acetate-CoA ligase|acetyl-Coenzyme A synthetase 2 (ADP forming)|acetyl-coenzyme A synthetase, cytoplasmic|acyl-activating enzyme|cytoplasmic acetyl-coenzyme A synthetase 20121230 -9606 55904 MLL5 - HDCMC04P|KMT2E HGNC:18541|MIM:608444|Ensembl:ENSG00000005483|HPRD:10528|Vega:OTTHUMG00000157403 7 7q22.1 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) protein-coding MLL5 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) O histone-lysine N-methyltransferase MLL5|lysine N-methyltransferase 2E|myeloid/lymphoid or mixed-lineage leukemia protein 5 20121230 -9606 55905 RNF114 - PSORS12|ZNF313 HGNC:13094|MIM:612451|Ensembl:ENSG00000124226|HPRD:10329|Vega:OTTHUMG00000032709 20 20q13.13 ring finger protein 114 protein-coding RNF114 ring finger protein 114 O RING finger protein 114|zinc finger protein 228|zinc finger protein 313 20121230 -9606 55906 ZC4H2 RP11-90I7.1 HCA127|KIAA1166 HGNC:24931|Ensembl:ENSG00000126970|HPRD:06584|Vega:OTTHUMG00000021712 X Xq11.2 zinc finger, C4H2 domain containing protein-coding ZC4H2 zinc finger, C4H2 domain containing O hepatocellular carcinoma-associated antigen 127|zinc finger C4H2 domain-containing protein 20121230 -9606 55907 CMAS - CSS HGNC:18290|MIM:603316|Ensembl:ENSG00000111726|HPRD:04501|Vega:OTTHUMG00000169097 12 12p12.1 cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding CMAS cytidine monophosphate N-acetylneuraminic acid synthetase O CMP-N-acetylneuraminic acid synthase|CMP-N-acetylneuraminic acid synthetase|CMP-Neu5Ac synthetase|CMP-NeuNAc synthase|CMP-NeuNAc synthetase|CMP-sialic acid synthetase|N-acylneuraminate cytidylyltransferase|cytidine 5'-monophosphate N-acetylneuraminic acid synthetase 20121230 -9606 55908 C19orf80 UNQ599/PRO1185 ANGPTL8|PRO1185|PVPA599|RIFL|TD26 HGNC:24933|Ensembl:ENSG00000130173|HPRD:14245|Vega:OTTHUMG00000180829 19 19p13.2 chromosome 19 open reading frame 80 protein-coding C19orf80 chromosome 19 open reading frame 80 O hepatocellular carcinoma-associated gene TD26|hepatocellular carcinoma-associated protein TD26|lipasin 20121230 -9606 55909 BIN3 - - HGNC:1054|MIM:606396|Ensembl:ENSG00000147439|HPRD:05904|Vega:OTTHUMG00000163844 8 8p21.3 bridging integrator 3 protein-coding BIN3 bridging integrator 3 O - 20121230 -9606 55911 APOBR - APOB100R|APOB48R HGNC:24087|MIM:605220|Ensembl:ENSG00000184730|HPRD:05561|Vega:OTTHUMG00000172705 16 16p11 apolipoprotein B receptor protein-coding APOBR apolipoprotein B receptor O apoB-48R|apolipoprotein B-100 receptor|apolipoprotein B-48 receptor|apolipoprotein B100 receptor|apolipoprotein B48 receptor 20121230 -9606 55914 ERBB2IP - ERBIN|LAP2 HGNC:15842|MIM:606944|Ensembl:ENSG00000112851|HPRD:06090|Vega:OTTHUMG00000097808 5 5q12.3 erbb2 interacting protein protein-coding ERBB2IP erbb2 interacting protein O densin-180-like protein|protein LAP2 20121230 -9606 55915 LANCL2 tcag7.697 GPR69B|TASP HGNC:6509|MIM:612919|Ensembl:ENSG00000132434|HPRD:13956|Vega:OTTHUMG00000023779 7 7q31.1-q31.33 LanC lantibiotic synthetase component C-like 2 (bacterial) protein-coding LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) O G protein-coupled receptor 69B|LanC (bacterial lantibiotic synthetase component C)-like 2|lanC-like protein 2|testis-specific adriamycin sensitivity protein 20121230 -9606 55916 NXT2 RP4-596C15.2 P15-2 HGNC:18151|MIM:300320|Ensembl:ENSG00000101888|HPRD:02264|Vega:OTTHUMG00000022185 X Xq23 nuclear transport factor 2-like export factor 2 protein-coding NXT2 nuclear transport factor 2-like export factor 2 O NTF2-related export protein 2|protein p15-2 20121230 -9606 55917 CTTNBP2NL - - HGNC:25330|Ensembl:ENSG00000143079|HPRD:10906|Vega:OTTHUMG00000011154 1 1p13.2 CTTNBP2 N-terminal like protein-coding CTTNBP2NL CTTNBP2 N-terminal like O CTTNBP2 N-terminal-like protein 20121230 -9606 55920 RCC2 - TD-60 HGNC:30297|MIM:609587|Ensembl:ENSG00000179051|HPRD:18171|Vega:OTTHUMG00000002513 1 1p36.13 regulator of chromosome condensation 2 protein-coding RCC2 regulator of chromosome condensation 2 O RCC1-like protein TD-60|protein RCC2|telophase disk protein of 60 kDa 20121230 -9606 55922 NKRF - ITBA4|NRF HGNC:19374|MIM:300440|Ensembl:ENSG00000186416|HPRD:02341|Vega:OTTHUMG00000022277 X Xq24 NFKB repressing factor protein-coding NKRF NFKB repressing factor O NF-kappa-B-repressing factor|transcription factor NRF 20121230 -9606 55924 FAM212B - C1orf183 HGNC:28045|Ensembl:ENSG00000197852|HPRD:14246|Vega:OTTHUMG00000011953 1 1p13.2 family with sequence similarity 212, member B protein-coding FAM212B family with sequence similarity 212, member B O protein FAM212B|uncharacterized protein C1orf183 20121230 -9606 55929 DMAP1 RP5-891H21.2 DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4 HGNC:18291|MIM:605077|Ensembl:ENSG00000178028|HPRD:05465|Vega:OTTHUMG00000007577 1 1p34 DNA methyltransferase 1 associated protein 1 protein-coding DMAP1 DNA methyltransferase 1 associated protein 1 O DNA methyltransferase 1-associated protein 1|DNMT1 associated protein 1|DNMT1-associated protein 1 20121230 -9606 55930 MYO5C - - HGNC:7604|MIM:610022|Ensembl:ENSG00000128833|HPRD:11380|Vega:OTTHUMG00000172630 15 15q21 myosin VC protein-coding MYO5C myosin VC O myosin 5C|myosin-Vc|unconventional myosin-Vc 20121230 -9606 55937 APOM DADB-127H9.5 G3a|HSPC336|NG20|apo-M HGNC:13916|MIM:606907|Ensembl:ENSG00000204444|HPRD:06068|Vega:OTTHUMG00000031250 6 6p21.33 apolipoprotein M protein-coding APOM apolipoprotein M O NG20-like protein|alternative name: G3a, NG20|protein G3a 20121230 -9606 55954 ZMAT5 - SNRNP20 HGNC:28046|Ensembl:ENSG00000100319|HPRD:14247|Vega:OTTHUMG00000151292 22 22cen-q12.3 zinc finger, matrin-type 5 protein-coding ZMAT5 zinc finger, matrin-type 5 O U11/U12 small nuclear ribonucleoprotein 20 kDa protein|U11/U12 snRNP 20 kDa protein|U11/U12 snRNP 20K|U11/U12-20K|zinc finger matrin-type protein 5|zinc finger, matrin type 5 20121230 -9606 55957 LIN37 MSTP064 F25965|ZK418.4|lin-37 HGNC:33234|Ensembl:ENSG00000267796|HPRD:16872|Vega:OTTHUMG00000182070 19 19q13.1 lin-37 homolog (C. elegans) protein-coding LIN37 lin-37 homolog (C. elegans) O antolefinin|protein F25965|protein lin-37 homolog 20121230 -9606 55958 KLHL9 RP11-380P16.6 - HGNC:18732|MIM:611201|Ensembl:ENSG00000198642|HPRD:13929|Vega:OTTHUMG00000019669 9 9p22 kelch-like 9 (Drosophila) protein-coding KLHL9 kelch-like 9 (Drosophila) O kelch-like protein 9 20121230 -9606 55959 SULF2 RP5-1049G16.1 HSULF-2 HGNC:20392|MIM:610013|Ensembl:ENSG00000196562|HPRD:18130|Vega:OTTHUMG00000032675 20 20q12-q13.2 sulfatase 2 protein-coding SULF2 sulfatase 2 O extracellular sulfatase Sulf-2 20121230 -9606 55964 SEPT3 CTA-250D10.3 SEP3|bK250D10.3 HGNC:10750|MIM:608314|Ensembl:ENSG00000100167|HPRD:10515|Vega:OTTHUMG00000030494 22 22q13.2 septin 3 protein-coding SEPT3 septin 3 O neuronal-specific septin 3|neuronal-specific septin-3 20121230 -9606 55966 AJAP1 - MOT8|RP3-426F10.1|SHREW-1|SHREW1 HGNC:30801|MIM:610972|Ensembl:ENSG00000196581|HPRD:15339|Vega:OTTHUMG00000000645 1 1p36.32 adherens junctions associated protein 1 protein-coding AJAP1 adherens junctions associated protein 1 O adherens junction associated protein 1|adherens junction-associated protein 1|membrane protein shrew-1|transmembrane protein SHREW1 20121230 -9606 55967 NDUFA12 - B17.2|DAP13 HGNC:23987|MIM:614530|Ensembl:ENSG00000184752|HPRD:16781|Vega:OTTHUMG00000170098 12 12q22 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 O 13 kDa differentiation-associated protein|CI-B17.2|NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12|NADH-ubiquinone oxidoreductase subunit B17.2|complex I B17.2 subunit 20121230 -9606 55968 NSFL1C RP4-776F14.2 P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 HGNC:15912|MIM:606610|Ensembl:ENSG00000088833|HPRD:09425|Vega:OTTHUMG00000031665 20 20p13 NSFL1 (p97) cofactor (p47) protein-coding NSFL1C NSFL1 (p97) cofactor (p47) O NSFL1 cofactor p47|SHP1 homolog|UBX domain-containing protein 2C|p97 cofactor p47 20121230 -9606 55969 C20orf24 PNAS-11 RIP5 HGNC:15870|Ensembl:ENSG00000101084|HPRD:12761|Vega:OTTHUMG00000032384 20 20q11.23 chromosome 20 open reading frame 24 protein-coding C20orf24 chromosome 20 open reading frame 24 O rab5-interacting protein|uncharacterized protein C20orf24 20121230 -9606 55970 GNG12 RP5-975D15.2 - HGNC:19663|Ensembl:ENSG00000172380|HPRD:13592|Vega:OTTHUMG00000009545 1 1p31.3 guanine nucleotide binding protein (G protein), gamma 12 protein-coding GNG12 guanine nucleotide binding protein (G protein), gamma 12 O G-protein gamma-12 subunit|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 20121230 -9606 55971 BAIAP2L1 - IRTKS HGNC:21649|MIM:611877|Ensembl:ENSG00000006453|HPRD:11270|Vega:OTTHUMG00000165117 7 7q22.1 BAI1-associated protein 2-like 1 protein-coding BAIAP2L1 BAI1-associated protein 2-like 1 O BAI1-associated protein 2-like protein 1|brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1|insulin receptor tyrosine kinase substrate 20121230 -9606 55972 SLC25A40 - MCFP HGNC:29680|MIM:610821|Ensembl:ENSG00000075303|HPRD:14372|Vega:OTTHUMG00000131033 7 7q21.12 solute carrier family 25, member 40 protein-coding SLC25A40 solute carrier family 25, member 40 O mitochondrial carrier family protein|solute carrier family 25 member 40 20121230 -9606 55973 BCAP29 - BAP29 HGNC:24131|Ensembl:ENSG00000075790|HPRD:16541|Vega:OTTHUMG00000154770 7 7q22.3 B-cell receptor-associated protein 29 protein-coding BCAP29 B-cell receptor-associated protein 29 O BCR-associated protein 29 20121230 -9606 55974 SLC50A1 RP11-540D14.5 HsSWEET1|RAG1AP1|SCP|SWEET1|slv HGNC:30657|MIM:613683|Ensembl:ENSG00000169241|HPRD:17427|Vega:OTTHUMG00000035333 1 1q22 solute carrier family 50 (sugar transporter), member 1 protein-coding SLC50A1 solute carrier family 50 (sugar transporter), member 1 O RAG1-activating protein 1|RZPDo834D038D|probable sugar transporter RAG1AP1|recombination activating gene 1 activating protein 1|solute carrier family 50 member 1|stromal cell protein|sugar transporter SWEET1 20121230 -9606 55975 KLHL7 - KLHL6|SBBI26 HGNC:15646|MIM:611119|Ensembl:ENSG00000122550|HPRD:13927|Vega:OTTHUMG00000094813 7 7p15.3 kelch-like 7 (Drosophila) protein-coding KLHL7 kelch-like 7 (Drosophila) O kelch-like 6|kelch-like protein 7|kelch/BTB 20121230 -9606 55997 CFC1 - CFC1B|CRYPTIC|DTGA2|HTX2 HGNC:18292|MIM:605194|Ensembl:ENSG00000136698|HPRD:05548|Vega:OTTHUMG00000131628 2 2q21.1 cripto, FRL-1, cryptic family 1 protein-coding CFC1 cripto, FRL-1, cryptic family 1 O cryptic family protein 1|cryptic protein 20121230 -9606 55998 NXF5 - - HGNC:8075|MIM:300319|Ensembl:ENSG00000126952|HPRD:02263|Vega:OTTHUMG00000022042 X Xq22 nuclear RNA export factor 5 protein-coding NXF5 nuclear RNA export factor 5 O TAP-like protein 1|TAPL-1 20121230 -9606 55999 NXF4 - - HGNC:8074|MIM:300318 X Xq22 nuclear RNA export factor 4 pseudogene pseudo NXF4 nuclear RNA export factor 4 pseudogene O - 20121230 -9606 56000 NXF3 LL0XNC01-221F2.3 - HGNC:8073|MIM:300316|Ensembl:ENSG00000147206|HPRD:02261|Vega:OTTHUMG00000022088 X Xq22 nuclear RNA export factor 3 protein-coding NXF3 nuclear RNA export factor 3 O TAP-like protein 3|TAPL-3 20121230 -9606 56001 NXF2 GHc-618H1.1 CT39|TAPL-2 HGNC:8072|MIM:300315|Ensembl:ENSG00000185554|HPRD:02260|Vega:OTTHUMG00000154916 X Xq22.1 nuclear RNA export factor 2 protein-coding NXF2 nuclear RNA export factor 2 O TAP-like protein 2|cancer/testis antigen 39|t-complex protein 11 homolog 20121230 -9606 56005 C19orf10 - EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20 HGNC:16948|MIM:606746|Ensembl:ENSG00000074842|HPRD:08415 19 19p13.3 chromosome 19 open reading frame 10 protein-coding C19orf10 chromosome 19 open reading frame 10 O UPF0556 protein C19orf10|interleukin 25|interleukin 27 working designation|interleukin-25|stromal cell-derived growth factor SF20 20121230 -9606 56006 SMG9 - C19orf61|F17127_1 HGNC:25763|MIM:613176|Ensembl:ENSG00000105771|HPRD:07800|Vega:OTTHUMG00000150337 19 19q13.31 smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding SMG9 smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) O protein SMG9|protein smg-9 homolog 20121230 -9606 56033 BARX1 RP11-231K24.1 - HGNC:955|MIM:603260|Ensembl:ENSG00000131668|HPRD:16017|Vega:OTTHUMG00000020255 9 9q12 BARX homeobox 1 protein-coding BARX1 BARX homeobox 1 O BarH-like homeobox 1|homeobox protein BarH-like 1 20121230 -9606 56034 PDGFC UNQ174/PRO200 FALLOTEIN|SCDGF HGNC:8801|MIM:608452|Ensembl:ENSG00000145431|HPRD:10529|Vega:OTTHUMG00000161803 4 4q32 platelet derived growth factor C protein-coding PDGFC platelet derived growth factor C O PDGF-C|VEGF-E|platelet-derived growth factor C|secretory growth factor-like protein|spinal cord-derived growth factor 20121230 -9606 56052 ALG1 PSEC0061 CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1 HGNC:18294|MIM:605907|Ensembl:ENSG00000033011|HPRD:10437|Vega:OTTHUMG00000129529 16 16p13.3 asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae) protein-coding ALG1 asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae) O GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase|GDP-mannose-dolichol diphosphochitobiose mannosyltransferase|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)|asparagine-linked glycosylation protein 1 homolog|beta-1,4 mannosyltransferase|beta-1,4-mannosyltransferase|chitobiosyldiphosphodolichol beta-mannosyltransferase|mannosyltransferase-1 20121230 -9606 56061 UBFD1 - UBPH HGNC:30565|Ensembl:ENSG00000103353|HPRD:15606|Vega:OTTHUMG00000128855 16 16p12 ubiquitin family domain containing 1 protein-coding UBFD1 ubiquitin family domain containing 1 O ubiquitin domain-containing protein UBFD1|ubiquitin-binding protein homolog 20121230 -9606 56062 KLHL4 - DKELCHL|KHL4 HGNC:6355|MIM:300348|Ensembl:ENSG00000102271|HPRD:02283|Vega:OTTHUMG00000021946 X Xq21.3 kelch-like 4 (Drosophila) protein-coding KLHL4 kelch-like 4 (Drosophila) O kelch-like protein 4 20121230 -9606 56063 TMEM234 RP4-622L5.3 AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7 HGNC:28837|Ensembl:ENSG00000160055|HPRD:15270|Vega:OTTHUMG00000005742 1 1p36.11-p34.2 transmembrane protein 234 protein-coding TMEM234 transmembrane protein 234 O - 20121230 -9606 56097 PCDHGC5 - PCDH-GAMMA-C5 HGNC:8718|MIM:606306|Ensembl:ENSG00000240764|HPRD:07318|Vega:OTTHUMG00000129624 5 5q31 protocadherin gamma subfamily C, 5 protein-coding PCDHGC5 protocadherin gamma subfamily C, 5 O protocadherin gamma-C5 20121230 -9606 56098 PCDHGC4 - PCDH-GAMMA-C4 HGNC:8717|MIM:606305|Ensembl:ENSG00000242419|HPRD:07317|Vega:OTTHUMG00000129625 5 5q31 protocadherin gamma subfamily C, 4 protein-coding PCDHGC4 protocadherin gamma subfamily C, 4 O protocadherin gamma-C4 20121230 -9606 56099 PCDHGB7 - ME6|PCDH-GAMMA-B7 HGNC:8714|MIM:606304|Ensembl:ENSG00000254122|HPRD:06952|Vega:OTTHUMG00000164054 5 5q31 protocadherin gamma subfamily B, 7 protein-coding PCDHGB7 protocadherin gamma subfamily B, 7 O cadherin ME6|protocadherin gamma-B7 20121230 -9606 56100 PCDHGB6 - PCDH-GAMMA-B6 HGNC:8713|MIM:606303|Ensembl:ENSG00000253305|HPRD:09393|Vega:OTTHUMG00000163687 5 5q31 protocadherin gamma subfamily B, 6 protein-coding PCDHGB6 protocadherin gamma subfamily B, 6 O protocadherin gamma-B6 20121230 -9606 56101 PCDHGB5 - PCDH-GAMMA-B5 HGNC:8712|MIM:606302|HPRD:09392 5 5q31 protocadherin gamma subfamily B, 5 protein-coding PCDHGB5 protocadherin gamma subfamily B, 5 O protocadherin gamma-B5 20121230 -9606 56102 PCDHGB3 - PCDH-GAMMA-B3 HGNC:8710|MIM:606301|Ensembl:ENSG00000262209|HPRD:09391|Vega:OTTHUMG00000177471 5 5q31 protocadherin gamma subfamily B, 3 protein-coding PCDHGB3 protocadherin gamma subfamily B, 3 O protocadherin gamma-B3 20121230 -9606 56103 PCDHGB2 - PCDH-GAMMA-B2 HGNC:8709|MIM:606300|Ensembl:ENSG00000253910|HPRD:09390|Vega:OTTHUMG00000163682 5 5q31 protocadherin gamma subfamily B, 2 protein-coding PCDHGB2 protocadherin gamma subfamily B, 2 O protocadherin gamma-B2 20121230 -9606 56104 PCDHGB1 - PCDH-GAMMA-B1 HGNC:8708|MIM:606299|Ensembl:ENSG00000254221|HPRD:09389|Vega:OTTHUMG00000163681 5 5q31 protocadherin gamma subfamily B, 1 protein-coding PCDHGB1 protocadherin gamma subfamily B, 1 O protocadherin gamma-B1 20121230 -9606 56105 PCDHGA11 - PCDH-GAMMA-A11 HGNC:8698|MIM:606298|Ensembl:ENSG00000253873|HPRD:09388|Vega:OTTHUMG00000164055 5 5q31 protocadherin gamma subfamily A, 11 protein-coding PCDHGA11 protocadherin gamma subfamily A, 11 O protocadherin gamma-A11 20121230 -9606 56106 PCDHGA10 - PCDH-GAMMA-A10 HGNC:8697|MIM:606297|Ensembl:ENSG00000253846|HPRD:09387|Vega:OTTHUMG00000163688 5 5q31 protocadherin gamma subfamily A, 10 protein-coding PCDHGA10 protocadherin gamma subfamily A, 10 O protocadherin gamma-A10 20121230 -9606 56107 PCDHGA9 - PCDH-GAMMA-A9 HGNC:8707|MIM:606296|Ensembl:ENSG00000261934|HPRD:09386|Vega:OTTHUMG00000177473 5 5q31 protocadherin gamma subfamily A, 9 protein-coding PCDHGA9 protocadherin gamma subfamily A, 9 O protocadherin gamma-A9 20121230 -9606 56108 PCDHGA7 - PCDH-GAMMA-A7 HGNC:8705|MIM:606294|Ensembl:ENSG00000253537|HPRD:09384|Vega:OTTHUMG00000163685 5 5q31 protocadherin gamma subfamily A, 7 protein-coding PCDHGA7 protocadherin gamma subfamily A, 7 O protocadherin gamma-A7 20121230 -9606 56109 PCDHGA6 - PCDH-GAMMA-A6 HGNC:8704|MIM:606293|Ensembl:ENSG00000253731|HPRD:09383|Vega:OTTHUMG00000163684 5 5q31 protocadherin gamma subfamily A, 6 protein-coding PCDHGA6 protocadherin gamma subfamily A, 6 O protocadherin gamma-A6 20121230 -9606 56110 PCDHGA5 - CDH-GAMMA-A5|ME3|PCDH-GAMMA-A5 HGNC:8703|MIM:606292|Ensembl:ENSG00000253485|HPRD:09382|Vega:OTTHUMG00000163683 5 5q31 protocadherin gamma subfamily A, 5 protein-coding PCDHGA5 protocadherin gamma subfamily A, 5 O cadherin ME3|protocadherin gamma-A5 20121230 -9606 56111 PCDHGA4 - PCDH-GAMMA-A4 HGNC:8702|MIM:606291|Ensembl:ENSG00000262576|HPRD:09381|Vega:OTTHUMG00000177593 5 5q31 protocadherin gamma subfamily A, 4 protein-coding PCDHGA4 protocadherin gamma subfamily A, 4 O protocadherin gamma-A4 20121230 -9606 56112 PCDHGA3 - PCDH-GAMMA-A3 HGNC:8701|MIM:606290|Ensembl:ENSG00000254245|HPRD:07553|Vega:OTTHUMG00000163680 5 5q31 protocadherin gamma subfamily A, 3 protein-coding PCDHGA3 protocadherin gamma subfamily A, 3 O protocadherin gamma-A3 20121230 -9606 56113 PCDHGA2 - PCDH-GAMMA-A2 HGNC:8700|MIM:606289|Ensembl:ENSG00000081853|HPRD:07552|Vega:OTTHUMG00000163679 5 5q31 protocadherin gamma subfamily A, 2 protein-coding PCDHGA2 protocadherin gamma subfamily A, 2 O protocadherin gamma-A2 20121230 -9606 56114 PCDHGA1 - PCDH-GAMMA-A1 HGNC:8696|MIM:606288|Ensembl:ENSG00000204956|HPRD:07551|Vega:OTTHUMG00000163678 5 5q31 protocadherin gamma subfamily A, 1 protein-coding PCDHGA1 protocadherin gamma subfamily A, 1 O protocadherin gamma-A1 20121230 -9606 56115 PCDHG@ - PCDH2|PCDH4|PCDHG HGNC:8695|MIM:604968 5 5q31 protocadherin gamma cluster other PCDHG@ protocadherin gamma cluster O - 20110814 -9606 56116 PCDHB@ - PCDH3 HGNC:8679|MIM:604967 5 5q31 protocadherin beta cluster other PCDHB@ protocadherin beta cluster O - 20121230 -9606 56117 PCDHA@ - CNR1|CNRS1 HGNC:8662|MIM:604966 5 5q31 protocadherin alpha cluster, complex locus other PCDHA@ protocadherin alpha cluster, complex locus O protocadherin alpha cluster 20121230 -9606 56118 PCDHGCT - PCDHGC HGNC:8719 5 5q31 protocadherin gamma constant other PCDHGCT protocadherin gamma constant O - 20110814 -9606 56119 PCDHACT - PCDHAC HGNC:8678 5 5q31 protocadherin alpha constant other PCDHACT protocadherin alpha constant O - 20121230 -9606 56120 PCDHGB8P - PCDH-PSI3 HGNC:8715 5 5q31 protocadherin gamma subfamily B, 8 pseudogene pseudo PCDHGB8P protocadherin gamma subfamily B, 8 pseudogene O - 20121230 -9606 56121 PCDHB15 - PCDH-BETA15 HGNC:8686|MIM:606341|Ensembl:ENSG00000113248|HPRD:06959|Vega:OTTHUMG00000129609 5 5q31 protocadherin beta 15 protein-coding PCDHB15 protocadherin beta 15 O PCDH-beta-15|protocadherin beta-15 20121230 -9606 56122 PCDHB14 - PCDH-BETA14 HGNC:8685|MIM:606340|Ensembl:ENSG00000120327|HPRD:06958|Vega:OTTHUMG00000129619 5 5q31 protocadherin beta 14 protein-coding PCDHB14 protocadherin beta 14 O PCDH-beta-14|protocadherin beta-14 20121230 -9606 56123 PCDHB13 UNQ332/PRO531 PCDH-BETA13 HGNC:8684|MIM:606339|Ensembl:ENSG00000187372|HPRD:06957|Vega:OTTHUMG00000129615 5 5q31 protocadherin beta 13 protein-coding PCDHB13 protocadherin beta 13 O PCDH-beta-13|protocadherin beta-13 20121230 -9606 56124 PCDHB12 - PCDH-BETA12 HGNC:8683|MIM:606338|Ensembl:ENSG00000120328|HPRD:06956|Vega:OTTHUMG00000129620 5 5q31 protocadherin beta 12 protein-coding PCDHB12 protocadherin beta 12 O PCDH-beta-12|protocadherin beta-12 20121230 -9606 56125 PCDHB11 - ME2|PCDH-BETA11 HGNC:8682|MIM:606337|Ensembl:ENSG00000197479|HPRD:06955|Vega:OTTHUMG00000129618 5 5q31 protocadherin beta 11 protein-coding PCDHB11 protocadherin beta 11 O PCDH-beta-11|cadherin ME2|protocadherin beta-11 20121230 -9606 56126 PCDHB10 UNQ1906/PRO4352 PCDH-BETA10|PCHB10 HGNC:8681|MIM:606336|Ensembl:ENSG00000120324|HPRD:06954|Vega:OTTHUMG00000129626 5 5q31 protocadherin beta 10 protein-coding PCDHB10 protocadherin beta 10 O PCDH-beta-10|protocadherin beta-10 20121230 -9606 56127 PCDHB9 - PCDH-BETA9|PCDH3H HGNC:8694|MIM:606335|HPRD:06953 5 5q31 protocadherin beta 9 protein-coding PCDHB9 protocadherin beta 9 O PCDH-beta-9|protocadherin beta-9|protocadherin-3h 20121230 -9606 56128 PCDHB8 - PCDH-BETA8|PCDH3I HGNC:8693|MIM:606334|Ensembl:ENSG00000120322|HPRD:07563|Vega:OTTHUMG00000129621 5 5q31 protocadherin beta 8 protein-coding PCDHB8 protocadherin beta 8 O PCDH-beta-8|protocadherin beta-8|protocadherin-3i 20121230 -9606 56129 PCDHB7 - PCDH-BETA7 HGNC:8692|MIM:606333|Ensembl:ENSG00000113212|HPRD:07562|Vega:OTTHUMG00000129608 5 5q31 protocadherin beta 7 protein-coding PCDHB7 protocadherin beta 7 O PCDH-beta-7|protocadherin beta-7 20121230 -9606 56130 PCDHB6 - PCDH-BETA6 HGNC:8691|MIM:606332|Ensembl:ENSG00000113211|HPRD:07561|Vega:OTTHUMG00000129623 5 5q31 protocadherin beta 6 protein-coding PCDHB6 protocadherin beta 6 O PCDH-beta-6|protocadherin beta-6 20121230 -9606 56131 PCDHB4 - PCDH-BETA4 HGNC:8689|MIM:606330|Ensembl:ENSG00000081818|HPRD:07559|Vega:OTTHUMG00000129617 5 5q31 protocadherin beta 4 protein-coding PCDHB4 protocadherin beta 4 O PCDH-beta-4|protocadherin beta-4 20121230 -9606 56132 PCDHB3 - PCDH-BETA3 HGNC:8688|MIM:606329|Ensembl:ENSG00000113205|HPRD:08398|Vega:OTTHUMG00000129622 5 5q31 protocadherin beta 3 protein-coding PCDHB3 protocadherin beta 3 O PCDH-beta-3|protocadherin beta-3 20121230 -9606 56133 PCDHB2 - PCDH-BETA2 HGNC:8687|MIM:606328|Ensembl:ENSG00000112852|HPRD:07558|Vega:OTTHUMG00000129606 5 5q31 protocadherin beta 2 protein-coding PCDHB2 protocadherin beta 2 O PCDH-beta-2|protocadherin beta-2 20121230 -9606 56134 PCDHAC2 - PCDH-ALPHA-C2 HGNC:8677|MIM:606321|Ensembl:ENSG00000243232|HPRD:07331|Vega:OTTHUMG00000129607 5 5q31 protocadherin alpha subfamily C, 2 protein-coding PCDHAC2 protocadherin alpha subfamily C, 2 O protocadherin alpha-C2 20121230 -9606 56135 PCDHAC1 - PCDH-ALPHA-C1 HGNC:8676|MIM:606320|Ensembl:ENSG00000248383|HPRD:07555|Vega:OTTHUMG00000129603 5 5q31 protocadherin alpha subfamily C, 1 protein-coding PCDHAC1 protocadherin alpha subfamily C, 1 O protocadherin alpha-C1 20121230 -9606 56136 PCDHA13 - CNR5|CNRN5|CNRS5|CRNR5|PCDH-ALPHA13 HGNC:8667|MIM:606319|Ensembl:ENSG00000239389|HPRD:07554|Vega:OTTHUMG00000129614 5 5q31 protocadherin alpha 13 protein-coding PCDHA13 protocadherin alpha 13 O KIAA0345-like 1|PCDH-alpha-13|ortholog of mouse CNR5|protocadherin alpha-13 20121230 -9606 56137 PCDHA12 - PCDH-ALPHA12 HGNC:8666|MIM:606318|Ensembl:ENSG00000251664|HPRD:07330|Vega:OTTHUMG00000163366 5 5q31 protocadherin alpha 12 protein-coding PCDHA12 protocadherin alpha 12 O KIAA0345-like 2|PCDH-alpha-12|protocadherin alpha-12 20121230 -9606 56138 PCDHA11 - CNR7|CNRN7|CNRS7|CRNR7|PCDH-ALPHA11 HGNC:8665|MIM:606317|Ensembl:ENSG00000249158|HPRD:07329|Vega:OTTHUMG00000163369 5 5q31 protocadherin alpha 11 protein-coding PCDHA11 protocadherin alpha 11 O KIAA0345-like 3|PCDH-alpha-11|ortholog of mouse CNR7|protocadherin alpha-11 20121230 -9606 56139 PCDHA10 - CNR8|CNRN8|CNRS8|CRNR8|PCDH-ALPHA10 HGNC:8664|MIM:606316|Ensembl:ENSG00000250120|HPRD:07328|Vega:OTTHUMG00000163372 5 5q31 protocadherin alpha 10 protein-coding PCDHA10 protocadherin alpha 10 O KIAA0345-like 4|PCDH-alpha-10|ortholog to mouse CNR8|protocadherin alpha-10 20121230 -9606 56140 PCDHA8 - PCDH-ALPHA8 HGNC:8674|MIM:606314|Ensembl:ENSG00000204962|HPRD:07326|Vega:OTTHUMG00000163354 5 5q31 protocadherin alpha 8 protein-coding PCDHA8 protocadherin alpha 8 O KIAA0345-like 6|PCDH-alpha-8|protocadherin alpha-8 20121230 -9606 56141 PCDHA7 - CNR4|CNRN4|CNRS4|CRNR4|PCDH-ALPHA7 HGNC:8673|MIM:606313|Ensembl:ENSG00000204963|HPRD:07325|Vega:OTTHUMG00000163371 5 5q31 protocadherin alpha 7 protein-coding PCDHA7 protocadherin alpha 7 O KIAA0345-like 7|PCDH-alpha-7|ortholog to mouse CNR4|protocadherin alpha-7 20121230 -9606 56142 PCDHA6 - CNR2|CNRN2|CNRS2|CRNR2|PCDH-ALPHA6 HGNC:8672|MIM:606312|Ensembl:ENSG00000081842|HPRD:07324|Vega:OTTHUMG00000163353 5 5q31 protocadherin alpha 6 protein-coding PCDHA6 protocadherin alpha 6 O KIAA0345-like 8|PCDH-alpha-6|protocadherin alpha-6 20121230 -9606 56143 PCDHA5 - CNR6|CNRN6|CNRS6|CRNR6|PCDH-ALPHA5 HGNC:8671|MIM:606311|Ensembl:ENSG00000204965|HPRD:07323|Vega:OTTHUMG00000163367 5 5q31 protocadherin alpha 5 protein-coding PCDHA5 protocadherin alpha 5 O KIAA0345-like 9|PCDH-alpha-5|ortholog of mouse CNR6|protocadherin alpha-5 20121230 -9606 56144 PCDHA4 - CNR1|CNRN1|CRNR1|PCDH-ALPHA4 HGNC:8670|MIM:606310|Ensembl:ENSG00000204967|HPRD:07322|Vega:OTTHUMG00000163360 5 5q31 protocadherin alpha 4 protein-coding PCDHA4 protocadherin alpha 4 O KIAA0345-like 10|PCDH-alpha-4|ortholog of mouse CNR1|protocadherin alpha-4 20121230 -9606 56145 PCDHA3 - PCDH-ALPHA3 HGNC:8669|MIM:606309|Ensembl:ENSG00000255408|HPRD:07321|Vega:OTTHUMG00000163357 5 5q31 protocadherin alpha 3 protein-coding PCDHA3 protocadherin alpha 3 O KIAA0345-like 11|PCDH-alpha-3|protocadherin alpha-3 20121230 -9606 56146 PCDHA2 - PCDH-ALPHA2 HGNC:8668|MIM:606308|Ensembl:ENSG00000204969|HPRD:07320|Vega:OTTHUMG00000163363 5 5q31 protocadherin alpha 2 protein-coding PCDHA2 protocadherin alpha 2 O KIAA0345-like 12|PCDH-alpha-2|protocadherin alpha-2 20121230 -9606 56147 PCDHA1 - PCDH-ALPHA1 HGNC:8663|MIM:606307|Ensembl:ENSG00000204970|HPRD:07319|Vega:OTTHUMG00000163368 5 5q31 protocadherin alpha 1 protein-coding PCDHA1 protocadherin alpha 1 O KIAA0345-like 13|PCDH-alpha-1|protocadherin alpha-1 20121230 -9606 56154 TEX15 - CT42 HGNC:11738|MIM:605795|Ensembl:ENSG00000133863|HPRD:09313|Vega:OTTHUMG00000163881 8 8p12 testis expressed 15 protein-coding TEX15 testis expressed 15 O cancer/testis antigen 42|testis-expressed sequence 15 protein 20121230 -9606 56155 TEX14 - CT113 HGNC:11737|MIM:605792|Ensembl:ENSG00000121101|Vega:OTTHUMG00000179245 17 17q22 testis expressed 14 protein-coding TEX14 testis expressed 14 O cancer/testis antigen 113|inactive serine/threonine-protein kinase TEX14|protein kinase-like protein SgK307|sugen kinase 307|testis expressed sequence 14|testis-expressed protein 14|testis-expressed sequence 14 protein 20121230 -9606 56156 TEX13B - TGC3B|TSGA5 HGNC:11736|MIM:300313|Ensembl:ENSG00000170925|HPRD:02258|Vega:OTTHUMG00000022174 X Xq22.3 testis expressed 13B protein-coding TEX13B testis expressed 13B O testis expressed sequence 13B|testis-expressed sequence 13B protein 20121230 -9606 56157 TEX13A LL0XNC01-42H12.1 - HGNC:11735|MIM:300312|Ensembl:ENSG00000133149|HPRD:02257|Vega:OTTHUMG00000022133 X Xq22.3 testis expressed 13A protein-coding TEX13A testis expressed 13A O testis expressed sequence 13A|testis-expressed sequence 13A protein 20121230 -9606 56158 TEX12 - - HGNC:11734|MIM:605791|Ensembl:ENSG00000150783|HPRD:12045|Vega:OTTHUMG00000167008 11 11q22 testis expressed 12 protein-coding TEX12 testis expressed 12 O testis expressed sequence 12|testis-expressed sequence 12 protein|testis-expressed sequence 12 protein variant 2|testis-expressed sequence 12 protein variant 3 20121230 -9606 56159 TEX11 RP11-291O7.2 TGC1|TSGA3 HGNC:11733|MIM:300311|Ensembl:ENSG00000120498|HPRD:02256|Vega:OTTHUMG00000021782 X Xq13.1 testis expressed 11 protein-coding TEX11 testis expressed 11 O testis expressed sequence 11|testis-expressed sequence 11 protein 20121230 -9606 56160 NDNL2 - HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3 HGNC:7677|MIM:608243|Ensembl:ENSG00000185115|HPRD:10503|Vega:OTTHUMG00000129261 15 15q13.1 necdin-like 2 protein-coding NDNL2 necdin-like 2 O MAGE-G1 antigen|hepatocellular carcinoma-associated protein 4|hepatocellular carcinoma-associated protein HCA4|melanoma antigen, family G, 1|melanoma-associated antigen G1|necdin-like gene 2|necdin-like protein 2 20121230 -9606 56162 CILD2 - PCD HGNC:1979|MIM:606763 19 19q13.3-qter ciliary dyskinesia, primary 2 unknown CILD2 ciliary dyskinesia, primary 2 O - 20120831 -9606 56163 RNF17 RP11-756A22.1 Mmip-2|SPATA23|TDRD4 HGNC:10060|MIM:605793|Ensembl:ENSG00000132972|HPRD:05779|HPRD:15482|Vega:OTTHUMG00000016589 13 13q12.12 ring finger protein 17 protein-coding RNF17 ring finger protein 17 O RING finger protein 17|spermatogenesis associated 23|tudor domain containing 4|tudor domain-containing protein 4 20121230 -9606 56164 STK31 - SGK396|TDRD8 HGNC:11407|MIM:605790|Ensembl:ENSG00000196335|HPRD:10427|Vega:OTTHUMG00000023053 7 7p15.3 serine/threonine kinase 31 protein-coding STK31 serine/threonine kinase 31 O serine/threonine-protein kinase 31|serine/threonine-protein kinase NYD-SPK|sugen kinase 396|tudor domain containing 8 20121230 -9606 56165 TDRD1 - CT41.1 HGNC:11712|MIM:605796|Ensembl:ENSG00000095627|HPRD:12047|Vega:OTTHUMG00000019083 10 10q25.3 tudor domain containing 1 protein-coding TDRD1 tudor domain containing 1 O cancer/testis antigen 41.1|tudor domain containing protein 1|tudor domain-containing protein 1 20121230 -9606 56167 MTCO1P1 - - HGNC:7420 21 21p11.2 MT-CO1 pseudogene 1 pseudo MTCO1P1 MT-CO1 pseudogene 1 O - 20121230 -9606 56168 MTND2P2 - bA522L3.2 HGNC:23767 X Xq22.1 MT-ND2 pseudogene 2 pseudo MTND2P2 MT-ND2 pseudogene 2 O - 20121230 -9606 56169 GSDMC - MLZE HGNC:7151|MIM:608384|Ensembl:ENSG00000147697|HPRD:12222|Vega:OTTHUMG00000164851 8 8q24.21 gasdermin C protein-coding GSDMC gasdermin C O gasdermin-C|melanoma-derived leucine zipper, extra-nuclear factor|melanoma-derived leucine zipper-containing extranuclear factor 20121230 -9606 56171 DNAH7 - - HGNC:18661|MIM:610061|Ensembl:ENSG00000118997|HPRD:10914|Vega:OTTHUMG00000154438 2 2q32.3 dynein, axonemal, heavy chain 7 protein-coding DNAH7 dynein, axonemal, heavy chain 7 O axonemal beta dynein heavy chain 7|axonemal dynein heavy chain 7|ciliary dynein heavy chain 7|dynein heavy chain 7, axonemal|dynein heavy chain-like protein 2|dynein, axonemal, heavy polypeptide 7|hDHC2 20121230 -9606 56172 ANKH UNQ241/PRO274 ANK|CCAL2|CMDJ|CPPDD|HANK|MANK HGNC:15492|MIM:605145|Ensembl:ENSG00000154122|HPRD:05509|Vega:OTTHUMG00000090539 5 5p15.1 ankylosis, progressive homolog (mouse) protein-coding ANKH ankylosis, progressive homolog (mouse) O progressive ankylosis protein homolog 20121230 -9606 56179 SLEB2 - hSLE1 HGNC:11081|MIM:605218 2 2q37 systemic lupus erythematosus susceptibility 2 unknown SLEB2 systemic lupus erythematosus susceptibility 2 O - 20110215 -9606 56180 MOSPD1 RP3-473B4.2 DJ473B4 HGNC:25235|MIM:300674|Ensembl:ENSG00000101928|HPRD:06483|Vega:OTTHUMG00000035315 X Xq26.3 motile sperm domain containing 1 protein-coding MOSPD1 motile sperm domain containing 1 O motile sperm domain-containing protein 1 20121230 -9606 56181 MTFR1L HYST1888 FAM54B|MST116|MSTP116 HGNC:28836|Ensembl:ENSG00000117640|HPRD:14248|Vega:OTTHUMG00000007377 1 1p36.11 mitochondrial fission regulator 1-like protein-coding MTFR1L mitochondrial fission regulator 1-like O family with sequence similarity 54, member B|protein FAM54B 20121230 -9606 56203 LMOD3 - - HGNC:6649|Ensembl:ENSG00000163380|HPRD:13993|Vega:OTTHUMG00000158774 3 3p14.1 leiomodin 3 (fetal) protein-coding LMOD3 leiomodin 3 (fetal) O leiomodin, fetal form|leiomodin-3 20121230 -9606 56204 FAM214A - KIAA1370 HGNC:25609|Ensembl:ENSG00000047346|HPRD:10965|Vega:OTTHUMG00000172688 15 15q21.2-q21.3 family with sequence similarity 214, member A protein-coding FAM214A family with sequence similarity 214, member A O protein FAM214A 20121230 -9606 56241 SUSD2 - BK65A6.2 HGNC:30667|Ensembl:ENSG00000099994|HPRD:18132|Vega:OTTHUMG00000150792 22 22q11-q12 sushi domain containing 2 protein-coding SUSD2 sushi domain containing 2 O Sushi domain (SCR repeat) containing|sushi domain-containing protein 2 20121230 -9606 56242 ZNF253 - BMZF-1|BMZF1|ZNF411 HGNC:13497|MIM:606954|Ensembl:ENSG00000256771|HPRD:06093|Vega:OTTHUMG00000182369 19 19p13.11 zinc finger protein 253 protein-coding ZNF253 zinc finger protein 253 O DNA-binding protein|bone marrow zinc finger 1|zinc finger protein 411 20121230 -9606 56243 KIAA1217 RP11-324E23.1 SKT HGNC:25428|Ensembl:ENSG00000120549|HPRD:11132|Vega:OTTHUMG00000017824 10 10p12.31 KIAA1217 protein-coding KIAA1217 KIAA1217 O likely orthologue of Mus musculus enhancer trap locus 4|sickle tail protein homolog 20121230 -9606 56244 BTNL2 DAAP-282D22.2 BTL-II|HSBLMHC1|SS2 HGNC:1142|MIM:606000|Ensembl:ENSG00000204290|HPRD:12077|Vega:OTTHUMG00000031102 6 6p21.3 butyrophilin-like 2 (MHC class II associated) protein-coding BTNL2 butyrophilin-like 2 (MHC class II associated) O butyrophilin-like protein 2 20121230 -9606 56245 C21orf62 - B37|C21orf120|PRED81 HGNC:1305|Ensembl:ENSG00000205929|HPRD:10759|Vega:OTTHUMG00000163477 21 21q22.11 chromosome 21 open reading frame 62 protein-coding C21orf62 chromosome 21 open reading frame 62 O uncharacterized protein C21orf62 20121230 -9606 56246 MRAP - B27|C21orf61|FALP|FGD2|GCCD2 HGNC:1304|MIM:609196|Ensembl:ENSG00000170262|HPRD:10758|Vega:OTTHUMG00000085309 21 21q22.1 melanocortin 2 receptor accessory protein protein-coding MRAP melanocortin 2 receptor accessory protein O fat cell-specific low molecular weight protein|fat tissue-specific low MW protein|melanocortin-2 receptor accessory protein 20121230 -9606 56247 FMR3 - - HGNC:3777 X Xq28 fragile X mental retardation associated 3 unknown FMR3 fragile X mental retardation associated 3 O - 20110215 -9606 56252 YLPM1 - C14orf170|ZAP113|ZAP3 HGNC:17798|Ensembl:ENSG00000119596|Vega:OTTHUMG00000172503 14 14q24.3 YLP motif containing 1 protein-coding YLPM1 YLP motif containing 1 O YLP motif-containing protein 1|nuclear protein ZAP3 20121230 -9606 56253 CRTAM - CD355 HGNC:24313|MIM:612597|Ensembl:ENSG00000109943|HPRD:16760|Vega:OTTHUMG00000166026 11 11q24.1 cytotoxic and regulatory T cell molecule protein-coding CRTAM cytotoxic and regulatory T cell molecule O class I MHC restricted T cell associated molecule|class-I MHC-restricted T cell associated molecule|class-I MHC-restricted T-cell-associated molecule|cytotoxic and regulatory T-cell molecule 20121230 -9606 56254 RNF20 - BRE1|BRE1A|hBRE1 HGNC:10062|MIM:607699|Ensembl:ENSG00000155827|HPRD:07410|Vega:OTTHUMG00000020385 9 9q22 ring finger protein 20, E3 ubiquitin protein ligase protein-coding RNF20 ring finger protein 20, E3 ubiquitin protein ligase O BRE1 E3 ubiquitin ligase homolog|BRE1-A|E3 ubiquitin-protein ligase BRE1A|homolog of S. cerevisiae BRE1 20121230 -9606 56255 TMX4 PSEC0095 DJ971N18.2|PDIA14|TXNDC13 HGNC:25237|Ensembl:ENSG00000125827|HPRD:11128|Vega:OTTHUMG00000031843 20 20p12 thioredoxin-related transmembrane protein 4 protein-coding TMX4 thioredoxin-related transmembrane protein 4 O protein disulfide isomerase family A, member 14|thioredoxin domain containing 13|thioredoxin domain-containing protein 13 20121230 -9606 56256 SERTAD4 - DJ667H12.2 HGNC:25236|Ensembl:ENSG00000082497|HPRD:15328|Vega:OTTHUMG00000036391 1 1q32.1-q41 SERTA domain containing 4 protein-coding SERTAD4 SERTA domain containing 4 O SERTA domain-containing protein 4 20121230 -9606 56257 MEPCE - BCDIN3 HGNC:20247|MIM:611478|Ensembl:ENSG00000146834|HPRD:07889|Vega:OTTHUMG00000155255 7 7q22.1 methylphosphate capping enzyme protein-coding MEPCE methylphosphate capping enzyme O 7SK snRNA methylphosphate capping enzyme|bicoid-interacting protein 3 homolog|bin3 homolog|bin3, bicoid-interacting 3, homolog 20121230 -9606 56259 CTNNBL1 RP5-1118M15.1 C20orf33|NAP|NYD-SP19|P14L|PP8304|dJ633O20.1 HGNC:15879|MIM:611537|Ensembl:ENSG00000132792|HPRD:10850|Vega:OTTHUMG00000032428 20 20q11.23-q12 catenin, beta like 1 protein-coding CTNNBL1 catenin, beta like 1 O beta-catenin-like protein 1|nuclear associated protein|nuclear-associated protein|testis development protein NYD-SP19 20121230 -9606 56260 C8orf44 - - HGNC:25646|Ensembl:ENSG00000213865|HPRD:07744|Vega:OTTHUMG00000164562 8 8q13.1 chromosome 8 open reading frame 44 protein-coding C8orf44 chromosome 8 open reading frame 44 O putative uncharacterized protein C8orf44 20121230 -9606 56261 GPCPD1 RP5-1022P6.2 GDE5|GDPD6|PREI4 HGNC:26957|MIM:614124|Ensembl:ENSG00000125772|HPRD:10025|Vega:OTTHUMG00000031806 20 20p12.3 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein-coding GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) O glycerophosphocholine phosphodiesterase GPCPD1|glycerophosphodiester phosphodiesterase 5|preimplantation protein 4|putative glycerophosphocholine phosphodiesterase GPCPD1|putative glycerophosphodiester phosphodiesterase 5 20121230 -9606 56262 LRRC8A RP11-101E3.3 AGM5|LRRC8 HGNC:19027|MIM:608360|Ensembl:ENSG00000136802|Vega:OTTHUMG00000020766 9 9q34.11 leucine rich repeat containing 8 family, member A protein-coding LRRC8A leucine rich repeat containing 8 family, member A O leucine-rich repeat-containing protein 8A 20121230 -9606 56265 CPXM1 UNQ3015/PRO9782 CPX1|CPXM HGNC:15771|MIM:609555|Ensembl:ENSG00000088882|HPRD:07099|Vega:OTTHUMG00000031706 20 20p13 carboxypeptidase X (M14 family), member 1 protein-coding CPXM1 carboxypeptidase X (M14 family), member 1 O carboxypeptidase-like protein X1|metallocarboxypeptidase CPX-1|probable carboxypeptidase X1 20121230 -9606 56267 CCBL2 RP11-82K18.3 KAT3|KATIII|RP4-531M19.2 HGNC:33238|MIM:610656|Ensembl:ENSG00000137944|HPRD:13752|Vega:OTTHUMG00000010617 1 1p22.2 cysteine conjugate-beta lyase 2 protein-coding CCBL2 cysteine conjugate-beta lyase 2 O cysteine-S-conjugate beta-lyase 2|kynurenine aminotransferase III|kynurenine--glyoxylate transaminase|kynurenine--oxoglutarate transaminase 3|kynurenine--oxoglutarate transaminase III|kynurenine-oxoglutarate transaminase 3 20121230 -9606 56269 IRGC - CINEMA|IFGGE|IRGC1|Iigp5|R30953_1 HGNC:28835|Ensembl:ENSG00000124449|HPRD:15200|Vega:OTTHUMG00000154587 19 19q13.31 immunity-related GTPase family, cinema protein-coding IRGC immunity-related GTPase family, cinema O immunity-related GTPase cinema 1|immunity-related GTPase family, cinema 1|interferon inducible GTPase 5|interferon-gamma-inducible GTPase IFGGE protein|interferon-inducible GTPase 5 20121230 -9606 56270 WDR45L hCG_30378 WIPI-3|WIPI3 HGNC:25072|MIM:609226|Ensembl:ENSG00000141580|HPRD:15669|Vega:OTTHUMG00000150146 17 17q25.3 WDR45-like protein-coding WDR45L WDR45-like O WD repeat domain phosphoinositide-interacting protein 3|WD repeat protein 45-like|WD repeat-containing protein 45-like|WDR45-like protein|WIPI49-like protein 20121230 -9606 56271 BEX4 RP4-635G19.2 BEXL1 HGNC:25475|MIM:300692|Ensembl:ENSG00000102409|Vega:OTTHUMG00000022091 X Xq22.1-q22.3 brain expressed, X-linked 4 protein-coding BEX4 brain expressed, X-linked 4 O BEX family member 4|BEX1-like protein 1|brain expressed X-linked-like 1|nerve growth factor receptor-associated protein 3|protein BEX4 20121230 -9606 56286 DAD1P1 - DAD1L|DADR HGNC:18295|MIM:609860 12 12p12.1 defender against cell death 1 pseudogene 1 pseudo DAD1P1 defender against cell death 1 pseudogene 1 O - 20121230 -9606 56287 GKN1 UNQ489/PRO1005 AMP18|BRICD1|CA11|FOV|foveolin HGNC:23217|MIM:606402|Ensembl:ENSG00000169605|HPRD:16217|Vega:OTTHUMG00000129574 2 2p13.3 gastrokine 1 protein-coding GKN1 gastrokine 1 O 18 kDa antrum mucosa protein|AMP-18|BRICHOS domain containing 1|gastrokine-1 20121230 -9606 56288 PARD3 RP11-406D17.1 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|SE2-5L16|SE2-5LT1|SE2-5T2 HGNC:16051|MIM:606745|Ensembl:ENSG00000148498|HPRD:05994|Vega:OTTHUMG00000017948 10 10p11.21 par-3 partitioning defective 3 homolog (C. elegans) protein-coding PARD3 par-3 partitioning defective 3 homolog (C. elegans) O CTCL tumor antigen se2-5|PAR3-alpha|atypical PKC isotype-specific interacting protein|atypical PKC isotype-specific-interacting protein|bazooka|partitioning defective 3 homolog 20121230 -9606 56300 IL36G UNQ2456/PRO5737 IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 HGNC:15741|MIM:605542|Ensembl:ENSG00000136688|HPRD:05707|Vega:OTTHUMG00000131336 2 2q12-q21 interleukin 36, gamma protein-coding IL36G interleukin 36, gamma O IL-1 epsilon|IL-1 related protein 2|IL-1(EPSILON)|IL-1-epsilon|IL-1-related protein 2|interleukin 1 family, member 9|interleukin 1-related protein 2|interleukin-1 epsilon|interleukin-1 family member 9|interleukin-1 homolog 1|interleukin-36 gamma 20121230 -9606 56301 SLC7A10 - HASC-1|asc-1 HGNC:11058|MIM:607959|Ensembl:ENSG00000130876|HPRD:12137|Vega:OTTHUMG00000180344 19 19q13.1 solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10 protein-coding SLC7A10 solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10 O asc-type amino acid transporter 1|solute carrier family 7 member 10|solute carrier family 7, (cationic amino acid transporter, y+ system) member 10|solute carrier family 7, (neutral amino acid transporter, y+ system) member 10 20121230 -9606 56302 TRPV5 - CAT2|ECAC1|OTRPC3 HGNC:3145|MIM:606679|Ensembl:ENSG00000127412|HPRD:05981|Vega:OTTHUMG00000157157 7 7q35 transient receptor potential cation channel, subfamily V, member 5 protein-coding TRPV5 transient receptor potential cation channel, subfamily V, member 5 O ECaC|calcium transport protein 2|calcium transporter 2|epithelial calcium channel 1|osm-9-like TRP channel 3|transient receptor potential cation channel subfamily V member 5 20121230 -9606 56311 ANKRD7 - TSA806 HGNC:18588|MIM:610731|Ensembl:ENSG00000106013|Vega:OTTHUMG00000156960 7 7q31 ankyrin repeat domain 7 protein-coding ANKRD7 ankyrin repeat domain 7 O ankyrin repeat domain-containing protein 7|testis-specific ankyrin motif containing protein|testis-specific protein TSA806 20121230 -9606 56339 METTL3 - IME4|M6A|MT-A70|Spo8 HGNC:17563|MIM:612472|Ensembl:ENSG00000165819|HPRD:14389|Vega:OTTHUMG00000168825 14 14q11.1 methyltransferase like 3 protein-coding METTL3 methyltransferase like 3 O N6-adenosine-methyltransferase 70 kDa subunit|adoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase|mRNA m(6)A methyltransferase|methyltransferase-like protein 3 20121230 -9606 56341 PRMT8 - HRMT1L3|HRMT1L4 HGNC:5188|MIM:610086|Ensembl:ENSG00000111218|HPRD:11029|Vega:OTTHUMG00000128493 12 12p13.3 protein arginine methyltransferase 8 protein-coding PRMT8 protein arginine methyltransferase 8 O HMT1 hnRNP methyltransferase-like 3|heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4|protein arginine N-methyltransferase 4|protein arginine N-methyltransferase 8 20121230 -9606 56342 PPAN - BXDC3|SSF|SSF-1|SSF1|SSF2 HGNC:9227|MIM:607793|Ensembl:ENSG00000130810|HPRD:08478|Vega:OTTHUMG00000156826 19 19p13 peter pan homolog (Drosophila) protein-coding PPAN peter pan homolog (Drosophila) O brix domain-containing protein 3|homolog of S. cerevisiae SSF1|second-step splicing factor 1|suppressor of SWI4 1 homolog|suppressor of sterile four 1 20121230 -9606 56344 CABP5 - CABP3 HGNC:13714|MIM:607315|Ensembl:ENSG00000105507|HPRD:09537 19 19q13.33 calcium binding protein 5 protein-coding CABP5 calcium binding protein 5 O calcium-binding protein 3|calcium-binding protein 5 20121230 -9606 56413 LTB4R2 - BLT2|BLTR2|JULF2|KPG_004|LTB4-R 2|LTB4-R2|NOP9 HGNC:19260|MIM:605773|Ensembl:ENSG00000213906|HPRD:16153|Vega:OTTHUMG00000029345 14 14q11.2-q12 leukotriene B4 receptor 2 protein-coding LTB4R2 leukotriene B4 receptor 2 O LTB4 receptor JULF2|leukotriene B4 receptor BLT2|seven transmembrane receptor BLTR2 20121230 -9606 56474 CTPS2 RP11-759L5.3 - HGNC:2520|MIM:300380|Ensembl:ENSG00000047230|HPRD:02305|Vega:OTTHUMG00000021193 X Xp22 CTP synthase 2 protein-coding CTPS2 CTP synthase 2 O CTP synthase II|CTP synthetase 2|CTP synthetase isoform|CTP synthetase type 2|UTP--ammonia ligase 2|UTP-ammonia ligase|cytidine 5'-triphosphate synthetase 2 20121230 -9606 56475 RPRM - REPRIMO HGNC:24201|MIM:612171|Ensembl:ENSG00000177519|HPRD:18002|Vega:OTTHUMG00000131905 2 2q23.3 reprimo, TP53 dependent G2 arrest mediator candidate protein-coding RPRM reprimo, TP53 dependent G2 arrest mediator candidate O candidate mediator of the p53 dependent G2 arrest|candidate mediator of the p53-dependent G2 arrest|protein reprimo|reprimo, TP53 dependant G2 arrest mediator candidate 20121230 -9606 56476 ABCB10P1 - ABCB10P|ABCB10P2|M-ABC2|MABC2 HGNC:14114 15 15q11.2 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 1 pseudo ABCB10P1 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 1 O - 20121230 -9606 56477 CCL28 - CCK1|MEC|SCYA28 HGNC:17700|MIM:605240|Ensembl:ENSG00000151882|HPRD:05577|Vega:OTTHUMG00000094811 5 5p12 chemokine (C-C motif) ligand 28 protein-coding CCL28 chemokine (C-C motif) ligand 28 O C-C motif chemokine 28|CC chemokine CCL28|chemokine (C-C motif) ligand 28 splice variant chi|mucosae-associated epithelial chemokine|small inducible cytokine A28|small inducible cytokine subfamily A (Cys-Cys), member 28|small-inducible cytokine A28 20121230 -9606 56478 EIF4ENIF1 RP11-247I13.2 4E-T|Clast4 HGNC:16687|MIM:607445|Ensembl:ENSG00000184708|HPRD:10456|Vega:OTTHUMG00000030793 22 22q11.2 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 O 2610509L04Rik|eIF4E transporter|eIF4E-transporter|eukaryotic translation initiation factor 4E transporter 20121230 -9606 56479 KCNQ5 RP11-257K9.5 Kv7.5 HGNC:6299|MIM:607357|Ensembl:ENSG00000185760|HPRD:16241|Vega:OTTHUMG00000015020 6 6q14 potassium voltage-gated channel, KQT-like subfamily, member 5 protein-coding KCNQ5 potassium voltage-gated channel, KQT-like subfamily, member 5 O KQT-like 5|potassium channel protein|potassium channel subunit alpha KvLQT5|potassium voltage-gated channel subfamily KQT member 5|voltage-gated potassium channel subunit Kv7.5 20121230 -9606 56521 DNAJC12 RP11-57G10.2 JDP1 HGNC:28908|MIM:606060|Ensembl:ENSG00000108176|HPRD:06930|Vega:OTTHUMG00000018339 10 10q22.1 DnaJ (Hsp40) homolog, subfamily C, member 12 protein-coding DNAJC12 DnaJ (Hsp40) homolog, subfamily C, member 12 O J domain containing protein 1 (JDP1)|J domain protein 1|dnaJ homolog subfamily C member 12|j domain-containing protein 1 20121230 -9606 56547 MMP26 - - HGNC:14249|MIM:605470|Ensembl:ENSG00000167346|HPRD:05683|Vega:OTTHUMG00000066442 11 11p15 matrix metallopeptidase 26 protein-coding MMP26 matrix metallopeptidase 26 O MMP-26|endometase|matrilysin 2|matrilysin-2|matrix metalloproteinase 26|matrix metalloproteinase-26 20121230 -9606 56548 CHST7 RP1-71L16.8 C6ST-2 HGNC:13817|MIM:300375|Ensembl:ENSG00000147119|HPRD:02302|Vega:OTTHUMG00000021423 X Xp11.23 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 protein-coding CHST7 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 O GST-5|N-acetylglucosamine 6-O-sulfotransferase 4|carbohydrate sulfotransferase 7|chondroitin 6-sulfotransferase-2|galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 5|glcNAc6ST-4|gn6st-4 20121230 -9606 56603 CYP26B1 - CYP26A2|P450RAI-2|P450RAI2|RHFCA HGNC:20581|MIM:605207|Ensembl:ENSG00000003137|HPRD:05550|Vega:OTTHUMG00000129756 2 2p13.2 cytochrome P450, family 26, subfamily B, polypeptide 1 protein-coding CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 O cytochrome P450 26A2|cytochrome P450 26B1|cytochrome P450 CYP26B1 variant 2|cytochrome P450 retinoic acid-inactivating 2|cytochrome P450 retinoid metabolizing protein|cytochrome P450RAI-2|retinoic acid-metabolizing cytochrome 20121230 -9606 56604 TUBB7P - TUBB4Q HGNC:12413|HPRD:15588 4 4q35 tubulin, beta 7, pseudogene pseudo TUBB7P tubulin, beta 7, pseudogene O - 20121230 -9606 56605 ERO1LB RP5-985L19.2 - HGNC:14355|Ensembl:ENSG00000086619|HPRD:13279|Vega:OTTHUMG00000039955 1 1q42.2-q43 ERO1-like beta (S. cerevisiae) protein-coding ERO1LB ERO1-like beta (S. cerevisiae) O ERO1-L-beta|ERO1-like protein beta|endoplasmic oxidoreductin-1-like protein B|oxidoreductin-1-L-beta 20121230 -9606 56606 SLC2A9 - GLUT9|GLUTX|UAQTL2|URATv1 HGNC:13446|MIM:606142|Ensembl:ENSG00000109667|HPRD:05848|Vega:OTTHUMG00000044263 4 4p16.1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 O GLUT-9|glucose transporter type 9|human glucose transporter-like protein-9|solute carrier family 2, facilitated glucose transporter member 9|urate voltage-driven efflux transporter 1 20121230 -9606 56616 DIABLO hCG_1782202 DFNA64|DIABLO-S|SMAC|SMAC3 HGNC:21528|MIM:605219|Ensembl:ENSG00000184047|HPRD:05560|Vega:OTTHUMG00000157014 12 12q24.31 diablo, IAP-binding mitochondrial protein protein-coding DIABLO diablo, IAP-binding mitochondrial protein O 0610041G12Rik|diablo homolog, mitochondrial|direct IAP-binding protein with low pI|mitochondrial Smac protein|second mitochondria-derived activator of caspase 20121230 -9606 56623 INPP5E - CORS1|CPD4|JBTS1|MORMS|PPI5PIV HGNC:21474|MIM:613037|Ensembl:ENSG00000148384|HPRD:17151|Vega:OTTHUMG00000020927 9 9q34.3 inositol polyphosphate-5-phosphatase, 72 kDa protein-coding INPP5E inositol polyphosphate-5-phosphatase, 72 kDa O 72 kDa inositol polyphosphate 5-phosphatase|phosphatidylinositol (4,5) bisphosphate 5-phosphatase|phosphatidylinositol 4,5-bisphosphate 5-phosphatase|phosphatidylinositol polyphosphate 5-phosphatase type IV|phosphatidylinositol-4,5-bisphosphate 5-phosphatase 20121230 -9606 56624 ASAH2 - BCDase|HNAC1|LCDase|N-CDase|NCDase HGNC:18860|MIM:611202|Ensembl:ENSG00000188611|Vega:OTTHUMG00000018223 10 10q11.21 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 protein-coding ASAH2 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 O N-acylsphingosine amidohydrolase 2|acylsphingosine deacylase 2|mitochondrial ceramidase|neutral ceramidase|neutral/alkaline ceramidase|non-lysosomal ceramidase 20121230 -9606 56647 BCCIP - TOK-1|TOK1 HGNC:978|MIM:611883|Ensembl:ENSG00000107949|HPRD:16542|Vega:OTTHUMG00000019237 10 10q26.1 BRCA2 and CDKN1A interacting protein protein-coding BCCIP BRCA2 and CDKN1A interacting protein O BCCIPalpha|BCCIPbeta|BRCA2 and CDKN1A-interacting protein|BRCA2 and Cip1/p21 interacting protein|TOK-1alpha|TOK-1beta|cdk inhibitor p21 binding protein|p21- and CDK-associated protein 1|protein TOK-1 20121230 -9606 56648 EIF5A2 - EIF-5A2|eIF5AII HGNC:3301|MIM:605782|Ensembl:ENSG00000163577|HPRD:10426|Vega:OTTHUMG00000158958 3 3q26.2 eukaryotic translation initiation factor 5A2 protein-coding EIF5A2 eukaryotic translation initiation factor 5A2 O eIF-5A-2|eukaryotic initiation factor 5A|eukaryotic translation initiation factor 5A-2 20121230 -9606 56649 TMPRSS4 UNQ776/PRO1570 CAPH2|MT-SP2|TMPRSS3 HGNC:11878|MIM:606565|Ensembl:ENSG00000137648|HPRD:05952|Vega:OTTHUMG00000164122 11 11q23.3 transmembrane protease, serine 4 protein-coding TMPRSS4 transmembrane protease, serine 4 O channel-activating protease 2|membrane-type serine protease 2|transmembrane protease serine 4|transmembrane serine protease 3|type II membrane serine protease 20121230 -9606 56650 CLDND1 HSPC174 C3orf4|GENX-3745 HGNC:1322|Ensembl:ENSG00000080822|HPRD:12822|Vega:OTTHUMG00000160050 3 3q12.1 claudin domain containing 1 protein-coding CLDND1 claudin domain containing 1 O claudin domain containing 1 protein|claudin domain-containing protein 1|membrane protein GENX-3745 20121230 -9606 56651 LINC00470 - C18orf2 HGNC:1225|HPRD:07576 18 - long intergenic non-protein coding RNA 470 miscRNA LINC00470 long intergenic non-protein coding RNA 470 O - 20121230 -9606 56652 C10orf2 RP11-108L7.2 ATXN8|IOSCA|MTDPS7|PEO|PEO1|PEOA3|SANDO|SCA8|TWINL HGNC:1160|MIM:606075|Ensembl:ENSG00000107815|HPRD:05830|Vega:OTTHUMG00000018917 10 10q24 chromosome 10 open reading frame 2 protein-coding C10orf2 chromosome 10 open reading frame 2 O T7 gp4-like protein with intramitochondrial nucleoid localization|T7 helicase-related protein with intramitochondrial nucleoid localization|T7-like mitochondrial DNA helicase|ataxin 8|mitochondrial twinkle protein|progressive external ophthalmoplegia 1 protein|twinkle protein, mitochondrial 20121230 -9606 56654 NPDC1 RP11-229P13.1 CAB|CAB-|CAB-1|CAB1|NPDC-1 HGNC:7899|MIM:605798|Ensembl:ENSG00000107281|HPRD:12048|Vega:OTTHUMG00000020956 9 9q34.3 neural proliferation, differentiation and control, 1 protein-coding NPDC1 neural proliferation, differentiation and control, 1 O neural proliferation differentiation and control protein 1 20121230 -9606 56655 POLE4 - YHHQ1|p12 HGNC:18755|MIM:607269|Ensembl:ENSG00000115350|HPRD:16238|Vega:OTTHUMG00000129971 2 2p12 polymerase (DNA-directed), epsilon 4, accessory subunit protein-coding POLE4 polymerase (DNA-directed), epsilon 4, accessory subunit O DNA polymerase II subunit 4|DNA polymerase epsilon p12 subunit|DNA polymerase epsilon subunit 4|DNA polymerase epsilon subunit p12|polymerase (DNA-directed), epsilon 4 (p12 subunit) 20121230 -9606 56656 OR2S2 - OR37A|OST715 HGNC:8276|Ensembl:ENSG00000122718|HPRD:17704|Vega:OTTHUMG00000019891 9 9p13.3 olfactory receptor, family 2, subfamily S, member 2 protein-coding OR2S2 olfactory receptor, family 2, subfamily S, member 2 O olfactory receptor 2S2|olfactory receptor OR9-3 20121230 -9606 56658 TRIM39 DAAP-385L22.4 RNF23|TFP|TRIM39B HGNC:10065|MIM:605700|Ensembl:ENSG00000204599|HPRD:09298|Vega:OTTHUMG00000031066 6 6p21.3 tripartite motif containing 39 protein-coding TRIM39 tripartite motif containing 39 O E3 ubiquitin-protein ligase TRIM39|ring finger protein 23|testis-abundant finger protein|tripartite motif-containing 39|tripartite motif-containing protein 39 20121230 -9606 56659 KCNK13 - K2p13.1|THIK-1|THIK1 HGNC:6275|MIM:607367|Ensembl:ENSG00000152315|HPRD:09563|Vega:OTTHUMG00000171017 14 14q32.11 potassium channel, subfamily K, member 13 protein-coding KCNK13 potassium channel, subfamily K, member 13 O K2P13.1 potassium channel|potassium channel subfamily K member 13|tandem pore domain halothane-inhibited potassium channel 1|tandem pore domain potassium channel THIK-1 20121230 -9606 56660 KCNK12 - K2p12.1|THIK-2|THIK2 HGNC:6274|MIM:607366|Ensembl:ENSG00000184261|HPRD:09562|Vega:OTTHUMG00000129131 2 2p16.3 potassium channel, subfamily K, member 12 protein-coding KCNK12 potassium channel, subfamily K, member 12 O potassium channel subfamily K member 12|tandem pore domain halothane-inhibited potassium channel 2|tandem pore domain potassium channel THIK-2 20121230 -9606 56662 VTRNA1-3 - HVG3|VAULTRC3|VR3|hvg-3 HGNC:12656|MIM:612697 5 5q31.3 vault RNA 1-3 miscRNA VTRNA1-3 vault RNA 1-3 O - 20121230 -9606 56663 VTRNA1-2 - HVG2|VAULTRC2|VR2|hvg-2 HGNC:12655|MIM:612696 5 5q31.3 vault RNA 1-2 miscRNA VTRNA1-2 vault RNA 1-2 O - 20121230 -9606 56664 VTRNA1-1 - HVG1|VAULTRC1|VR1|hvg-1|vRNA HGNC:12654|MIM:612695 5 5q31.3 vault RNA 1-1 miscRNA VTRNA1-1 vault RNA 1-1 O - 20121230 -9606 56666 PANX2 RP3-402G11.9 PX2|hPANX2 HGNC:8600|MIM:608421|Ensembl:ENSG00000073150|HPRD:09760|Vega:OTTHUMG00000044649 22 22q13.33 pannexin 2 protein-coding PANX2 pannexin 2 O pannexin-2 20121230 -9606 56667 MUC13 UNQ6194/PRO20221 DRCC1|MUC-13 HGNC:7511|MIM:612181|Ensembl:ENSG00000173702|HPRD:10101|Vega:OTTHUMG00000159484 3 3q21.2 mucin 13, cell surface associated protein-coding MUC13 mucin 13, cell surface associated O down-regulated in colon cancer 1|mucin 13, epithelial transmembrane|mucin-13 20121230 -9606 56670 SUCNR1 - GPR91 HGNC:4542|MIM:606381|Ensembl:ENSG00000198829|HPRD:16211|Vega:OTTHUMG00000159880 3 3q25.1 succinate receptor 1 protein-coding SUCNR1 succinate receptor 1 O G protein-coupled receptor 91|G-protein coupled receptor 91|P2Y purinoceptor 1 20121230 -9606 56672 AKIP1 - BCA3|C11orf17 HGNC:1170|MIM:609191|Ensembl:ENSG00000166452|HPRD:12380|Vega:OTTHUMG00000165653 11 11p15.3 A kinase (PRKA) interacting protein 1 protein-coding AKIP1 A kinase (PRKA) interacting protein 1 O A-kinase-interacting protein 1|breast cancer associated gene 3|koyt binding protein 1|koyt binding protein 2|koyt binding protein 3|proline-rich protein BCA3 20121230 -9606 56673 C11orf16 - - HGNC:1169|Ensembl:ENSG00000176029|HPRD:12604|Vega:OTTHUMG00000165654 11 11p15.3 chromosome 11 open reading frame 16 protein-coding C11orf16 chromosome 11 open reading frame 16 O uncharacterized protein C11orf16 20121230 -9606 56674 TMEM9B UNQ712/PRO1375 C11orf15 HGNC:1168|Ensembl:ENSG00000175348|HPRD:12603|Vega:OTTHUMG00000165676 11 11p15.3 TMEM9 domain family, member B protein-coding TMEM9B TMEM9 domain family, member B O transmembrane protein 9B 20121230 -9606 56675 NRIP3 - C11orf14|NY-SAR-105 HGNC:1167|MIM:613125|Ensembl:ENSG00000175352|HPRD:14840|Vega:OTTHUMG00000165680 11 11p15.3 nuclear receptor interacting protein 3 protein-coding NRIP3 nuclear receptor interacting protein 3 O nuclear receptor-interacting protein 3|sarcoma antigen NY-SAR-105 20121230 -9606 56676 ASCL3 - HASH3|SGN1|bHLHa42 HGNC:740|MIM:609154|Ensembl:ENSG00000176009|HPRD:18523 11 11p15.3 achaete-scute complex homolog 3 (Drosophila) protein-coding ASCL3 achaete-scute complex homolog 3 (Drosophila) O ASH-3|achaete-scute homolog 3|bHLH transcription factor Sgn-1 (Salivary Glands 1)|bHLH transcriptional regulator Sgn-1|class A basic helix-loop-helix protein 42 20121230 -9606 56677 FABP3P2 - FABP3-ps|FABP3P HGNC:3558 13 13q13-q14 fatty acid binding protein 3, pseudogene 2 pseudo FABP3P2 fatty acid binding protein 3, pseudogene 2 O - 20121230 -9606 56681 SAR1A RP11-367H5.4 SAR1|SARA1|Sara|masra2 HGNC:10534|MIM:607691|Ensembl:ENSG00000079332|HPRD:07608|Vega:OTTHUMG00000018400 10 10q22.1 SAR1 homolog A (S. cerevisiae) protein-coding SAR1A SAR1 homolog A (S. cerevisiae) O COPII-associated small GTPase|GTP-binding protein SAR1a|SAR1 gene homolog A|SAR1a gene homolog 1 20121230 -9606 56683 C21orf59 - C21orf48 HGNC:1301|Ensembl:ENSG00000159079|Ensembl:ENSG00000265590|HPRD:10756|Vega:OTTHUMG00000064928|Vega:OTTHUMG00000179510 21 21q22.1 chromosome 21 open reading frame 59 protein-coding C21orf59 chromosome 21 open reading frame 59 O prostate cancer upregulated protein 1|uncharacterized protein C21orf59 20121230 -9606 56694 BMIQ8 - OB10P MIM:603188 10 10p body mass index quantitative trait locus 8 unknown - - - - 20120622 -9606 56704 JPH1 - JP-1|JP1 HGNC:14201|MIM:605266|Ensembl:ENSG00000104369|HPRD:07286|Vega:OTTHUMG00000164524 8 8q21 junctophilin 1 protein-coding JPH1 junctophilin 1 O junctophilin type 1|junctophilin type1|junctophilin-1|mitsugumin72 20121230 -9606 56729 RETN UNQ407/PRO1199 ADSF|FIZZ3|RETN1|RSTN|XCP1 HGNC:20389|MIM:605565|Ensembl:ENSG00000104918|HPRD:05714 19 19p13.2 resistin protein-coding RETN resistin O C/EBP-epsilon regulated myeloid-specific secreted cysteine-rich protein precursor 1|adipose tissue-specific secretory factor|c/EBP-epsilon-regulated myeloid-specific secreted cysteine-rich protein|cysteine-rich secreted protein A12-alpha-like 2|cysteine-rich secreted protein FIZZ3|found in inflammatory zone 3|resistin delta2 20121230 -9606 56731 SLC2A4RG RP4-583P15.6 GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19 HGNC:15930|MIM:609493|Ensembl:ENSG00000125520|HPRD:15364|Vega:OTTHUMG00000032997 20 20q13.33 SLC2A4 regulator protein-coding SLC2A4RG SLC2A4 regulator O GLUT4 enhancer factor|Huntington's disease gene regulatory region-binding protein 1 20121230 -9606 56751 BARHL1 FKSG31 - HGNC:953|MIM:605211|Ensembl:ENSG00000125492|HPRD:05554|Vega:OTTHUMG00000020839 9 9q34 BarH-like homeobox 1 protein-coding BARHL1 BarH-like homeobox 1 O barH-like 1 homeobox protein 20121230 -9606 56776 FMN2 RP11-90L13.1 - HGNC:14074|MIM:606373|Ensembl:ENSG00000155816|HPRD:10449|Vega:OTTHUMG00000039883 1 1q43 formin 2 protein-coding FMN2 formin 2 O formin-2 20121230 -9606 56797 HTGS - - MIM:145750 15 15q11.2-q13.1 Hypertriglyceridemia, familial unknown - - - - 20120622 -9606 56801 HYALP - HDLD3|HYLAP MIM:605201 11 11q23.3 Hypoalphalipoproteinemia, primary unknown - - - - 20120722 -9606 56829 ZC3HAV1 PRO1677 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 HGNC:23721|MIM:607312|Ensembl:ENSG00000105939|HPRD:09534|Vega:OTTHUMG00000157471 7 7q34 zinc finger CCCH-type, antiviral 1 protein-coding ZC3HAV1 zinc finger CCCH-type, antiviral 1 O ADP-ribosyltransferase diphtheria toxin-like 13|zinc finger CCCH domain-containing protein 2|zinc finger CCCH-type antiviral protein 1 20121230 -9606 56832 IFNK UNQ6124/PRO20084 RP11-27J8.1 HGNC:21714|Ensembl:ENSG00000147896|HPRD:17133|Vega:OTTHUMG00000019715 9 - interferon, kappa protein-coding IFNK interferon, kappa O IFN-kappa|interferon kappa|interferon-like protein 20121230 -9606 56833 SLAMF8 RP11-190A12.3 BLAME|CD353|SBBI42 HGNC:21391|MIM:606620|Ensembl:ENSG00000158714|HPRD:09429|Vega:OTTHUMG00000035433 1 1q23.2 SLAM family member 8 protein-coding SLAMF8 SLAM family member 8 O B lymphocyte activator macrophage expressed|B-lymphocyte activator macrophage expressed|BCM-like membrane protein 20121230 -9606 56834 GPR137 - C11orf4|GPR137A|TM7SF1L1 HGNC:24300|Ensembl:ENSG00000173264|HPRD:12600|Vega:OTTHUMG00000167817 11 11cen-q22.3 G protein-coupled receptor 137 protein-coding GPR137 G protein-coupled receptor 137 O integral membrane protein GPR137|transmembrane 7 superfamily member 1-like 1 protein 20121230 -9606 56848 SPHK2 - SK 2|SK-2|SPK 2|SPK-2 HGNC:18859|MIM:607092|Ensembl:ENSG00000063176|HPRD:06157 19 19q13.2 sphingosine kinase 2 protein-coding SPHK2 sphingosine kinase 2 O sphingosine kinase type 2 20121230 -9606 56849 TCEAL7 LL0XNC01-105G4.1 MPMGp800C04260Q003 HGNC:28336|MIM:300771|Ensembl:ENSG00000182916|HPRD:06641|Vega:OTTHUMG00000022096 X Xq22.1 transcription elongation factor A (SII)-like 7 protein-coding TCEAL7 transcription elongation factor A (SII)-like 7 O TCEA-like protein 7|transcription elongation factor A protein-like 7|transcription elongation factor S-II protein-like 7 20121230 -9606 56850 GRIPAP1 - GRASP-1 HGNC:18706|MIM:300408|Ensembl:ENSG00000068400|HPRD:02325|Vega:OTTHUMG00000033192 X Xp11 GRIP1 associated protein 1 protein-coding GRIPAP1 GRIP1 associated protein 1 O GRIP1-associated protein 1|MPMGp800B12492Q3 20121230 -9606 56851 EMC7 HT022 C11orf3|C15orf24|ORF1-FL1 HGNC:24301|Ensembl:ENSG00000134153|HPRD:12670|Vega:OTTHUMG00000129367 15 15q14 ER membrane protein complex subunit 7 protein-coding EMC7 ER membrane protein complex subunit 7 O UPF0480 protein C15orf24|chromosome 15 hypothetical ATG/GTP binding protein|chromosome 15 open reading frame 24 20121230 -9606 56852 RAD18 - RNF73 HGNC:18278|MIM:605256|Ensembl:ENSG00000070950|HPRD:09242|Vega:OTTHUMG00000090545 3 3p25-p24 RAD18 homolog (S. cerevisiae) protein-coding RAD18 RAD18 homolog (S. cerevisiae) O E3 ubiquitin-protein ligase RAD18|RAD18, S. cerevisiae, homolog|RING finger protein 73|hHR18|hRAD18|postreplication repair protein RAD18|postreplication repair protein hRAD18p 20121230 -9606 56853 CELF4 - BRUNOL-4|BRUNOL4 HGNC:14015|MIM:612679|Ensembl:ENSG00000101489|HPRD:12534|Vega:OTTHUMG00000178178 18 18q12 CUGBP, Elav-like family member 4 protein-coding CELF4 CUGBP, Elav-like family member 4 O Bruno -like 4, RNA binding protein|CELF-4|CUG-BP and ETR-3 like factor 4|CUG-BP- and ETR-3-like factor 4|CUGBP Elav-like family member 4|LYST-interacting protein LIP9|RNA-binding protein BRUNOL-4|RNA-binding protein BRUNOL4|bruno-like 4, RNA binding protein|bruno-like protein 4 20121230 -9606 56882 CDC42SE1 - SCIP1|SPEC1 HGNC:17719|Ensembl:ENSG00000197622|HPRD:16694|Vega:OTTHUMG00000035158 1 1q21.3 CDC42 small effector 1 protein-coding CDC42SE1 CDC42 small effector 1 O 1300002M12Rik|CDC42 small effector protein 1|CDC42-binding protein SCIP1|signaling molecule SPEC1 beta|small effector of CDC42 protein 1|small protein effector 1 of Cdc42 20121230 -9606 56884 FSTL5 - - HGNC:21386|Ensembl:ENSG00000168843|HPRD:10998|Vega:OTTHUMG00000161397 4 4q32.3 follistatin-like 5 protein-coding FSTL5 follistatin-like 5 O follistatin-like protein 5|follistatin-related protein 5 20121230 -9606 56886 UGGT1 - HUGT1|UGCGL1|UGT1 HGNC:15663|MIM:605897|Ensembl:ENSG00000136731|HPRD:12064|Vega:OTTHUMG00000131570 2 2q14.3 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 O UDP--Glc:glycoprotein glucosyltransferase|UDP-glucose ceramide glucosyltransferase-like 1|UDP-glucose:glycoprotein glucosyltransferase 1 20121230 -9606 56888 KCMF1 - DEBT91|FIGC|PCMF|ZZZ1 HGNC:20589|MIM:614719|Ensembl:ENSG00000176407|HPRD:13761|Vega:OTTHUMG00000153004 2 2p11.2 potassium channel modulatory factor 1 protein-coding KCMF1 potassium channel modulatory factor 1 O E3 ubiquitin-protein ligase KCMF1|FGF-induced in gastric cancer|FGF-induced ubiquitin-protein ligase in gastric cancers|ZZ-type zinc finger-containing protein 1|differentially expressed in branching tubulogenesis 91|zinc finger, ZZ domain containing 1 20121230 -9606 56889 TM9SF3 RP11-34E5.1 EP70-P-iso|SMBP HGNC:21529|Ensembl:ENSG00000077147|HPRD:18073|Vega:OTTHUMG00000018834 10 10q24.1 transmembrane 9 superfamily member 3 protein-coding TM9SF3 transmembrane 9 superfamily member 3 O SM-11044 binding protein|SM-11044-binding protein|endomembrane protein emp70 precursor isolog 20121230 -9606 56890 MDM1 - - HGNC:29917|MIM:613813|Ensembl:ENSG00000111554|HPRD:14376|Vega:OTTHUMG00000169136 12 12q15 Mdm1 nuclear protein homolog (mouse) protein-coding MDM1 Mdm1 nuclear protein homolog (mouse) O Mdm4, transformed 3T3 cell double minute 1, p53 binding protein|nuclear protein MDM1|nuclear protein double minute 1 20121230 -9606 56891 LGALS14 - CLC2|PPL13 HGNC:30054|MIM:607260|Ensembl:ENSG00000006659|HPRD:06268 19 19q13.2 lectin, galactoside-binding, soluble, 14 protein-coding LGALS14 lectin, galactoside-binding, soluble, 14 O Charcot-Leyden crystal protein 2|gal-14|galectin-14|placental protein 13-like|placental protein 13-like protein 20121230 -9606 56892 C8orf4 - TC-1|TC1 HGNC:1357|MIM:607702|Ensembl:ENSG00000176907|HPRD:09650|Vega:OTTHUMG00000164045 8 8p11.2 chromosome 8 open reading frame 4 protein-coding C8orf4 chromosome 8 open reading frame 4 O human thyroid cancer 1|thyroid cancer protein 1|uncharacterized protein C8orf4 20121230 -9606 56893 UBQLN4 RP11-336K24.8 A1U|A1Up|C1orf6|CIP75|UBIN HGNC:1237|MIM:605440|Ensembl:ENSG00000160803|HPRD:05670|Vega:OTTHUMG00000017461 1 1q21 ubiquilin 4 protein-coding UBQLN4 ubiquilin 4 O ataxin-1 interacting ubiquitin-like protein|ataxin-1 ubiquitin-like interacting protein|ataxin-1 ubiquitin-like-interacting protein A1U|connexin43-interacting protein of 75 kDa|ubiquilin-4 20121230 -9606 56894 AGPAT3 UNQ759/PRO1490 LPAAT-GAMMA1|LPAAT3 HGNC:326|MIM:614794|Ensembl:ENSG00000160216|HPRD:10637|Vega:OTTHUMG00000086892 21 21q22.3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 O 1-AGP acyltransferase 3|1-AGPAT 3|1-acyl-sn-glycerol-3-phosphate acyltransferase gamma|lysophosphatidic acid acyltransferase gamma|lysophosphatidic acid acyltransferase-gamma1 20121230 -9606 56895 AGPAT4 RP3-473J16.2 1-AGPAT4|LPAAT-delta|dJ473J16.2 HGNC:20885|MIM:614795|Ensembl:ENSG00000026652|HPRD:12437|Vega:OTTHUMG00000015966 6 6q26 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) protein-coding AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) O 1-AGP acyltransferase 4|1-AGPAT 4|1-acyl-sn-glycerol-3-phosphate acyltransferase delta|lysophosphatidic acid acyltransferase delta|lysophosphatidic acid acyltransferase-delta (LPAAT-delta) 20121230 -9606 56896 DPYSL5 - CRAM|CRMP-5|CRMP5|Ulip6 HGNC:20637|MIM:608383|Ensembl:ENSG00000157851|HPRD:10522|Vega:OTTHUMG00000097071 2 2p23.3 dihydropyrimidinase-like 5 protein-coding DPYSL5 dihydropyrimidinase-like 5 O CRMP3-associated molecule|DRP-5|ULIP-6|UNC33-like phosphoprotein 6|collapsin response mediator protein 5|collapsin response mediator protein-5|dihydropyrimidinase-related protein 5 20121230 -9606 56897 WRNIP1 - RP11-420G6.2|WHIP|bA420G6.2 HGNC:20876|MIM:608196|Ensembl:ENSG00000124535|HPRD:10494|Vega:OTTHUMG00000014126 6 6p25.2 Werner helicase interacting protein 1 protein-coding WRNIP1 Werner helicase interacting protein 1 O ATPase WRNIP1|Werner helicase-interacting protein 1|putative helicase RUVBL 20121230 -9606 56898 BDH2 UNQ6308/PRO20933 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 HGNC:32389|Ensembl:ENSG00000164039|HPRD:07103|Vega:OTTHUMG00000074039 4 4q24 3-hydroxybutyrate dehydrogenase, type 2 protein-coding BDH2 3-hydroxybutyrate dehydrogenase, type 2 O 3-hydroxybutyrate dehydrogenase type 2|R-beta-hydroxybutyrate dehydrogenase|dehydrogenase/reductase (SDR family) member 6|dehydrogenase/reductase SDR family member 6|oxidoreductase UCPA|short chain dehydrogenase/reductase family 15C, member 1 20121230 -9606 56899 ANKS1B - AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 HGNC:24600|MIM:607815|Ensembl:ENSG00000185046|HPRD:07426|Vega:OTTHUMG00000170308 12 12q23.1 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B O E2a-Pbx1-associated protein|amyloid-beta precursor protein intracellular domain associated protein 1|ankyrin repeat and sterile alpha motif domain-containing protein 1B|cajalin 2 20121230 -9606 56900 TMEM167B AD-020 C1orf119 HGNC:30187|Ensembl:ENSG00000215717|HPRD:16474|Vega:OTTHUMG00000042364 1 1p13.3 transmembrane protein 167B protein-coding TMEM167B transmembrane protein 167B O protein kish-B|protein x 013 20121230 -9606 56901 NDUFA4L2 - NUOMS HGNC:29836|Ensembl:ENSG00000185633|HPRD:14249|Vega:OTTHUMG00000171275 12 12q13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 protein-coding NDUFA4L2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2|NADH-ubiquinone oxidoreductase MLRQ subunit homolog|NADH:ubiquinone oxidoreductase MLRQ subunit homolog 20121230 -9606 56902 PNO1 - KHRBP1|RRP20 HGNC:32790|Ensembl:ENSG00000115946|HPRD:14250|Vega:OTTHUMG00000129563 2 2p14 partner of NOB1 homolog (S. cerevisiae) protein-coding PNO1 partner of NOB1 homolog (S. cerevisiae) O KH-type RNA-binding protein 1|RNA binding protein|RNA-binding protein PNO1 20121230 -9606 56903 PAPOLB - PAPT|TPAP HGNC:15970|MIM:607436|Ensembl:ENSG00000218823|HPRD:08467|Vega:OTTHUMG00000151759 7 7p22.1 poly(A) polymerase beta (testis specific) protein-coding PAPOLB poly(A) polymerase beta (testis specific) O PAP-beta|poly(A) polymerase beta|polynucleotide adenylyltransferase beta|testis-specific poly(A) polymerase 20121230 -9606 56904 SH3GLB2 RP11-167N5.3 PP6569|PP9455|RRIG1 HGNC:10834|MIM:609288|Ensembl:ENSG00000148341|HPRD:15334|Vega:OTTHUMG00000020769 9 9q34 SH3-domain GRB2-like endophilin B2 protein-coding SH3GLB2 SH3-domain GRB2-like endophilin B2 O SH3 domain-containing GRB2-like protein B2|SH3-containing protein SH3GLB2|endophilin-B2|retinoid receptor-induced gene 1 20121230 -9606 56905 C15orf39 FP6578 - HGNC:24497|Ensembl:ENSG00000167173|HPRD:13154|Vega:OTTHUMG00000142820 15 15q24.2 chromosome 15 open reading frame 39 protein-coding C15orf39 chromosome 15 open reading frame 39 O uncharacterized protein C15orf39 20121230 -9606 56906 THAP10 - - HGNC:23193|MIM:612538|Ensembl:ENSG00000129028|HPRD:15497|Vega:OTTHUMG00000133388 15 15q23 THAP domain containing 10 protein-coding THAP10 THAP domain containing 10 O THAP domain-containing protein 10 20121230 -9606 56907 SPIRE1 - Spir-1 HGNC:30622|MIM:609216|Ensembl:ENSG00000134278|HPRD:11600|Vega:OTTHUMG00000153940 18 18p11.21 spire homolog 1 (Drosophila) protein-coding SPIRE1 spire homolog 1 (Drosophila) O protein spire homolog 1 20121230 -9606 56910 STARD7 - GTT1 HGNC:18063|Ensembl:ENSG00000084090|HPRD:18118|Vega:OTTHUMG00000130457 2 2q11.2 StAR-related lipid transfer (START) domain containing 7 protein-coding STARD7 StAR-related lipid transfer (START) domain containing 7 O START domain containing 7|START domain-containing protein 7|gestational trophoblastic tumor protein 1|stAR-related lipid transfer protein 7, mitochondrial 20121230 -9606 56911 C21orf7 - HC21ORF7|MAP3K7CL|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 HGNC:16457|MIM:611110|Ensembl:ENSG00000156265|HPRD:10764|Vega:OTTHUMG00000078806 21 21q22.3 chromosome 21 open reading frame 7 protein-coding C21orf7 chromosome 21 open reading frame 7 O MAP3K7 c-terminal like|TAK1-like protein|TAK1-like protein 1|TAK1-like protein 2|TAK1-like protein 4|TGF-beta activated kinase 20121230 -9606 56912 IFT46 - C11orf2|C11orf60 HGNC:26146|Ensembl:ENSG00000118096|HPRD:07967|Vega:OTTHUMG00000166408 11 11q23.3 intraflagellar transport 46 homolog (Chlamydomonas) protein-coding IFT46 intraflagellar transport 46 homolog (Chlamydomonas) O UPF0360|intraflagellar transport protein 46 homolog|intraflagellar transport protein IFT46 20121230 -9606 56913 C1GALT1 - C1GALT|T-synthase HGNC:24337|MIM:610555|Ensembl:ENSG00000106392|HPRD:16631|Vega:OTTHUMG00000151912 7 7p21.3 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 protein-coding C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 O B3Gal-T8|core 1 O-glycan T-synthase|core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1|core 1 beta3-Gal-T1|glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 20121230 -9606 56914 OTOR UNQ3054/PRO9873 FDP|MIAL|MIAL1 HGNC:8517|MIM:606067|Ensembl:ENSG00000125879|HPRD:07300|Vega:OTTHUMG00000031931 20 20p12.1-p11.23 otoraplin protein-coding OTOR otoraplin O fibrocyte-derived protein|melanoma inhibitory activity-like protein 20121230 -9606 56915 EXOSC5 - RRP41B|RRP46|Rrp46p|hRrp46p|p12B HGNC:24662|MIM:606492|Ensembl:ENSG00000077348|HPRD:16222 19 19q13.1 exosome component 5 protein-coding EXOSC5 exosome component 5 O chronic myelogenous leukemia tumor antigen 28|exosome complex component RRP46|exosome complex exonuclease RRP46|exosome component Rrp46|ribosomal RNA-processing protein 46 20121230 -9606 56916 SMARCAD1 - ADERM|ETL1|HEL1 HGNC:18398|MIM:612761|Ensembl:ENSG00000163104|HPRD:11586|Vega:OTTHUMG00000130971 4 4q22-q23 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 O ATP-dependent helicase 1|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 20121230 -9606 56917 MEIS3 - MRG2 HGNC:29537|Ensembl:ENSG00000105419|HPRD:14386|Vega:OTTHUMG00000172280 19 19q13.32 Meis homeobox 3 protein-coding MEIS3 Meis homeobox 3 O Meis1, myeloid ecotropic viral integration site 1 homolog 3|homeobox protein Meis3|meis1-related protein 2 20121230 -9606 56918 C2orf83 - - HGNC:25344|Ensembl:ENSG00000042304|HPRD:13208|Vega:OTTHUMG00000153550 2 2q36.3 chromosome 2 open reading frame 83 protein-coding C2orf83 chromosome 2 open reading frame 83 O folate transporter-like protein C2orf83 20121230 -9606 56919 DHX33 - DDX33 HGNC:16718|MIM:614405|Ensembl:ENSG00000005100|HPRD:13143|Vega:OTTHUMG00000102041 17 17p13.2 DEAH (Asp-Glu-Ala-His) box polypeptide 33 protein-coding DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33 O DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 33|DEAH box protein 33|putative ATP-dependent RNA helicase DHX33 20121230 -9606 56920 SEMA3G - sem2 HGNC:30400|Ensembl:ENSG00000010319|HPRD:14251|Vega:OTTHUMG00000158570 3 3p21.1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G protein-coding SEMA3G sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G O semaphorin sem2|semaphorin-3G 20121230 -9606 56922 MCCC1 - MCC-B|MCCA HGNC:6936|MIM:609010|Ensembl:ENSG00000078070|HPRD:01951|Vega:OTTHUMG00000158355 3 3q27 methylcrotonoyl-CoA carboxylase 1 (alpha) protein-coding MCCC1 methylcrotonoyl-CoA carboxylase 1 (alpha) O 3-methylcrotonyl-CoA carboxylase 1|3-methylcrotonyl-CoA carboxylase biotin-containing subunit|3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha|MCCase subunit alpha|methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 20121230 -9606 56923 NMUR2 - FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 HGNC:16454|MIM:605108|Ensembl:ENSG00000132911|HPRD:12003|Vega:OTTHUMG00000130131 5 5q33.1 neuromedin U receptor 2 protein-coding NMUR2 neuromedin U receptor 2 O G-protein coupled receptor FM-4|G-protein coupled receptor TGR-1|growth hormone secretagogue receptor family, member 4|neuromedin-U receptor 2 20121230 -9606 56924 PAK6 - PAK5 HGNC:16061|MIM:608110|Ensembl:ENSG00000137843|HPRD:06426|Vega:OTTHUMG00000129921 15 15q14 p21 protein (Cdc42/Rac)-activated kinase 6 protein-coding PAK6 p21 protein (Cdc42/Rac)-activated kinase 6 O PAK-5|PAK-6|p21(CDKN1A)-activated kinase 6|p21-activated kinase 6|p21-activated protein kinase 6|serine/threonine-protein kinase PAK 6 20121230 -9606 56925 LXN - ECI|TCI HGNC:13347|MIM:609305|Ensembl:ENSG00000079257|HPRD:14327|Vega:OTTHUMG00000158807 3 3q25.32 latexin protein-coding LXN latexin O MUM|endogenous carboxypeptidase inhibitor|tissue carboxypeptidase inhibitor 20121230 -9606 56926 NCLN - NET59 HGNC:26923|MIM:609156|Ensembl:ENSG00000125912|HPRD:07126|Vega:OTTHUMG00000180687 19 19p13.3 nicalin protein-coding NCLN nicalin O nicalin homolog (zebrefish)|nicastrin-like protein 20121230 -9606 56927 GPR108 - LUSTR2 HGNC:17829|Ensembl:ENSG00000125734 19 19p13.3 G protein-coupled receptor 108 protein-coding GPR108 G protein-coupled receptor 108 O lung seven transmembrane receptor 2|protein GPR108 20121230 -9606 56928 SPPL2B - IMP-4|IMP4|PSH4|PSL1 HGNC:30627|MIM:608239|HPRD:09743 19 19p13.3 signal peptide peptidase like 2B protein-coding SPPL2B signal peptide peptidase like 2B O SPP-like 2B|intramembrane protease 4|presenilin homologous protein 4|presenilin-like protein 1|signal peptide peptidase-like 2B 20121230 -9606 56929 FEM1C - EUROIMAGE686608|EUROIMAGE783647|FEM1A HGNC:16933|MIM:608767|Ensembl:ENSG00000145780|HPRD:16384|Vega:OTTHUMG00000128895 5 5q22 fem-1 homolog c (C. elegans) protein-coding FEM1C fem-1 homolog c (C. elegans) O FEM1-gamma|protein fem-1 homolog C 20121230 -9606 56931 DUS3L - DUS3 HGNC:26920|Ensembl:ENSG00000141994|HPRD:14252|Vega:OTTHUMG00000162311 19 19p13.3 dihydrouridine synthase 3-like (S. cerevisiae) protein-coding DUS3L dihydrouridine synthase 3-like (S. cerevisiae) O tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 20121230 -9606 56934 CA10 hucep-15 CA-RPX|CARPX|HUCEP-15 HGNC:1369|MIM:604642|Ensembl:ENSG00000154975|HPRD:05224|Vega:OTTHUMG00000177544 17 17q21.33 carbonic anhydrase X protein-coding CA10 carbonic anhydrase X O CA-RP X|CARP X|carbonic anhydrase-related protein 10|carbonic anhydrase-related protein X|cerebral protein 15|cerebral protein-15 20121230 -9606 56935 C11orf75 - FN5 HGNC:24810|MIM:609477|Ensembl:ENSG00000166002|HPRD:17008|Vega:OTTHUMG00000167442 11 11q21 chromosome 11 open reading frame 75 protein-coding C11orf75 chromosome 11 open reading frame 75 O UPF0443 protein C11orf75 20121230 -9606 56936 CCDC177 - C14orf162|PLPL HGNC:23243|HPRD:16614 14 14q24.1 coiled-coil domain containing 177 protein-coding CCDC177 coiled-coil domain containing 177 O myelin proteolipid protein-like protein|uncharacterized protein C14orf162 20121230 -9606 56937 PMEPA1 RP4-718J7.3 STAG1|TMEPAI HGNC:14107|MIM:606564|Ensembl:ENSG00000124225|HPRD:09415|Vega:OTTHUMG00000032831 20 20q13.31-q13.33 prostate transmembrane protein, androgen induced 1 protein-coding PMEPA1 prostate transmembrane protein, androgen induced 1 O solid tumor-associated 1 protein|transmembrane prostate androgen-induced protein|transmembrane, prostate androgen induced RNA 20121230 -9606 56938 ARNTL2 - BMAL2|CLIF|MOP9|PASD9|bHLHe6 HGNC:18984|MIM:614517|Ensembl:ENSG00000029153|HPRD:16507|Vega:OTTHUMG00000169257 12 12p12.2-p11.2 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2 O CYCLE-like factor|PAS domain-containing protein 9|aryl hydrocarbon receptor nuclear translocator-like protein 2|basic-helix-loop-helix-PAS protein MOP9|brain and muscle ARNT-like 2|class E basic helix-loop-helix protein 6|member of PAS protein 9|transcription factor BMAL2 20121230 -9606 56940 DUSP22 RP11-328C17.1 JKAP|JSP1|LMWDSP2|MKPX|VHX HGNC:16077|HPRD:13255 6 6p25.3 dual specificity phosphatase 22 protein-coding DUSP22 dual specificity phosphatase 22 O JNK-stimulating phosphatase 1|JNK-stimulatory phosphatase-1|JSP-1|LMW-DSP2|MAP kinase phosphatase x|MKP-x|dual specificity protein phosphatase 22|homolog of mouse dual specificity phosphatase LMW-DSP2|low molecular weight dual specificity phosphatase 2|mitogen-activated protein kinase phosphatase x 20121230 -9606 56941 C3orf37 DC12 - HGNC:24446|Ensembl:ENSG00000183624|HPRD:13119|Vega:OTTHUMG00000159452 3 3q21.3 chromosome 3 open reading frame 37 protein-coding C3orf37 chromosome 3 open reading frame 37 O UPF0361 protein C3orf37 20121230 -9606 56942 CMC2 DC13 2310061C15Rik|C16orf61 HGNC:24447|Ensembl:ENSG00000103121|HPRD:16783|Vega:OTTHUMG00000137625 16 16q23.2 COX assembly mitochondrial protein 2 homolog (S. cerevisiae) protein-coding CMC2 COX assembly mitochondrial protein 2 homolog (S. cerevisiae) O COX assembly mitochondrial protein 2 homolog 20121230 -9606 56943 ENY2 DC6 e(y)2 HGNC:24449|Ensembl:ENSG00000120533|HPRD:13121|Vega:OTTHUMG00000164933 8 8q23.1 enhancer of yellow 2 homolog (Drosophila) protein-coding ENY2 enhancer of yellow 2 homolog (Drosophila) O enhancer of yellow 2 transcription factor homolog 20121230 -9606 56944 OLFML3 PSEC0035 HNOEL-iso|OLF44 HGNC:24956|MIM:610088|Ensembl:ENSG00000116774|HPRD:14878|Vega:OTTHUMG00000011980 1 1p13.2 olfactomedin-like 3 protein-coding OLFML3 olfactomedin-like 3 O hOLF44|olfactomedin-like protein 3 20121230 -9606 56945 MRPS22 GK002 C3orf5|COXPD5|GIBT|MRP-S22|RPMS22 HGNC:14508|MIM:605810|Ensembl:ENSG00000175110|HPRD:10430|Vega:OTTHUMG00000159910 3 3q23 mitochondrial ribosomal protein S22 protein-coding MRPS22 mitochondrial ribosomal protein S22 O 28S ribosomal protein S22, mitochondrial|S22mt 20121230 -9606 56946 C11orf30 GL002 EMSY HGNC:18071|MIM:608574|Ensembl:ENSG00000158636|HPRD:10544|Vega:OTTHUMG00000165282 11 11q13.5 chromosome 11 open reading frame 30 protein-coding C11orf30 chromosome 11 open reading frame 30 O protein EMSY 20121230 -9606 56947 MFF AD030 C2orf33|GL004 HGNC:24858|MIM:614785|Ensembl:ENSG00000168958|HPRD:16653|Vega:OTTHUMG00000133180 2 2q36.3 mitochondrial fission factor protein-coding MFF mitochondrial fission factor O - 20121230 -9606 56948 SDR39U1 - C14orf124|HCDI HGNC:20275|Ensembl:ENSG00000100445|HPRD:16598|Vega:OTTHUMG00000171316 14 14q12 short chain dehydrogenase/reductase family 39U, member 1 protein-coding SDR39U1 short chain dehydrogenase/reductase family 39U, member 1 O epimerase family protein SDR39U1|short-chain dehydrogenase/reductase family 39U member 1 20121230 -9606 56949 XAB2 PP3898 HCNP|HCRN|NTC90|SYF1 HGNC:14089|MIM:610850|Ensembl:ENSG00000076924|HPRD:18306 19 19p13.2 XPA binding protein 2 protein-coding XAB2 XPA binding protein 2 O SYF1 homolog, RNA splicing factor|XPA-binding protein 2|crn-related protein kim1|pre-mRNA-splicing factor SYF1 20121230 -9606 56950 SMYD2 RP11-176D17.2 HSKM-B|KMT3C|ZMYND14 HGNC:20982|MIM:610663|Ensembl:ENSG00000143499|HPRD:15406|Vega:OTTHUMG00000037066 1 1q32.3 SET and MYND domain containing 2 protein-coding SMYD2 SET and MYND domain containing 2 O N-lysine methyltransferase SMYD2|SET and MYND domain-containing protein 2|histone methyltransferase SMYD2|lysine N-methyltransferase 3C|zinc finger, MYND domain containing 14 20121230 -9606 56951 C5orf15 HTGN29 KCT2 HGNC:20656|Ensembl:ENSG00000113583|HPRD:12829|Vega:OTTHUMG00000129125 5 5q31.1 chromosome 5 open reading frame 15 protein-coding C5orf15 chromosome 5 open reading frame 15 O keratinocyte-associated transmembrane protein 2|keratinocytes associated transmembrane protein 2 20121230 -9606 56952 PRTFDC1 RP11-129O7.1 HHGP HGNC:23333|MIM:610751|Ensembl:ENSG00000099256|HPRD:17917|Vega:OTTHUMG00000017829 10 10p12.1 phosphoribosyl transferase domain containing 1 protein-coding PRTFDC1 phosphoribosyl transferase domain containing 1 O phosphoribosyltransferase domain-containing protein 1 20121230 -9606 56953 NT5M - dNT-2|dNT2|mdN HGNC:15769|MIM:605292|Ensembl:ENSG00000205309|HPRD:12009|Vega:OTTHUMG00000059277 17 17p11.2 5',3'-nucleotidase, mitochondrial protein-coding NT5M 5',3'-nucleotidase, mitochondrial O 5' nucleotidase, mitochondrial|5'(3')-deoxyribonucleotidase, mitochondrial|5(3)-deoxyribonucleotidase|deoxy-5'-nucleotidase 2|mitochondrial 5' nucleotidase 20121230 -9606 56954 NIT2 CUA002 - HGNC:29878|Ensembl:ENSG00000114021|HPRD:17634|Vega:OTTHUMG00000159066 3 3q12.2 nitrilase family, member 2 protein-coding NIT2 nitrilase family, member 2 O Nit protein 2|nitrilase homolog 2|omega-amidase NIT2 20121230 -9606 56955 MEPE - OF45 HGNC:13361|MIM:605912|Ensembl:ENSG00000152595|HPRD:06908|Vega:OTTHUMG00000130592 4 4q21.1 matrix extracellular phosphoglycoprotein protein-coding MEPE matrix extracellular phosphoglycoprotein O matrix, extracellular phosphoglycoprotein with ASARM motif (bone)|osteoblast/osteocyte factor 45 20121230 -9606 56956 LHX9 RP11-255O17.2 - HGNC:14222|MIM:606066|Ensembl:ENSG00000143355|HPRD:07299|Vega:OTTHUMG00000035656 1 1q31.1 LIM homeobox 9 protein-coding LHX9 LIM homeobox 9 O LIM homeobox protein 9|LIM/homeobox protein Lhx9 20121230 -9606 56957 OTUD7B RP11-212K13.2 CEZANNE|ZA20D1 HGNC:16683|MIM:611748|Ensembl:ENSG00000163113|HPRD:10313|Vega:OTTHUMG00000012291 1 1q21.2 OTU domain containing 7B protein-coding OTUD7B OTU domain containing 7B O OTU domain-containing protein 7B|cellular zinc finger anti-NF-kappa-B protein|cellular zinc finger anti-NF-kappaB Cezanne|zinc finger A20 domain-containing protein 1|zinc finger protein Cezanne|zinc finger, A20 domain containing 1 20121230 -9606 56961 SHD - - HGNC:30633|MIM:610481|Ensembl:ENSG00000105251|HPRD:15337 19 19p13.3 Src homology 2 domain containing transforming protein D protein-coding SHD Src homology 2 domain containing transforming protein D O SH2 domain-containing adapter protein D|src homology 2 domain-containing transforming protein D 20121230 -9606 56963 RGMA - RGM HGNC:30308|MIM:607362|Ensembl:ENSG00000182175|HPRD:09560|Vega:OTTHUMG00000171781 15 15q26.1 RGM domain family, member A protein-coding RGMA RGM domain family, member A O repulsive guidance molecule A 20121230 -9606 56964 WDR93 - - HGNC:26924|Ensembl:ENSG00000140527|HPRD:14253|Vega:OTTHUMG00000172007 15 15q26.1 WD repeat domain 93 protein-coding WDR93 WD repeat domain 93 O WD repeat-containing protein 93 20121230 -9606 56965 PARP6 - ARTD17|PARP-6-B1|PARP-6-C|pART17 HGNC:26921|Ensembl:ENSG00000137817|HPRD:15102|Vega:OTTHUMG00000133443 15 15q23 poly (ADP-ribose) polymerase family, member 6 protein-coding PARP6 poly (ADP-ribose) polymerase family, member 6 O ADP-ribosyltransferase diphtheria toxin-like 17|PARP-6|poly [ADP-ribose] polymerase 6 20121230 -9606 56967 C14orf132 - C14orf88 HGNC:20346|HPRD:16603 14 14q32.2 chromosome 14 open reading frame 132 protein-coding C14orf132 chromosome 14 open reading frame 132 O putative uncharacterized protein C14orf132|uncharacterized protein C14orf132 20121230 -9606 56969 RPL23AP32 - RPL23A_9_220 HGNC:25345|HPRD:13209 2 2p16.2 ribosomal protein L23a pseudogene 32 pseudo RPL23AP32 ribosomal protein L23a pseudogene 32 O - 20121230 -9606 56970 ATXN7L3 - - HGNC:25416|Ensembl:ENSG00000087152|Vega:OTTHUMG00000181812 17 17q21.31 ataxin 7-like 3 protein-coding ATXN7L3 ataxin 7-like 3 O SAGA-associated factor 11 homolog|ataxin-7-like protein 3 20121230 -9606 56971 CEACAM19 UNQ2973/PRO7436 CEAL1 HGNC:31951|MIM:606691|Ensembl:ENSG00000186567|HPRD:16229|Vega:OTTHUMG00000151528 19 19q13.31 carcinoembryonic antigen-related cell adhesion molecule 19 protein-coding CEACAM19 carcinoembryonic antigen-related cell adhesion molecule 19 O carcinoembryonic antigen-like 1 20121230 -9606 56972 DKFZp547D104 - - - 5 5q31.1 uncharacterized protein DKFZp547D104 protein-coding - - - uncharacterized protein LOC56972 20111025 -9606 56975 FAM20C - DMP-4|DMP4|GEF-CK|RNS HGNC:22140|MIM:611061|HPRD:13298 7 7p22.3 family with sequence similarity 20, member C protein-coding FAM20C family with sequence similarity 20, member C O dentin matrix protein 4|extracellular serine/threonine protein kinase Fam20C|golgi-enriched fraction casein kinase 20121230 -9606 56977 STOX2 - - HGNC:25450|Ensembl:ENSG00000173320|HPRD:16823|Vega:OTTHUMG00000160618 4 4q35.1 storkhead box 2 protein-coding STOX2 storkhead box 2 O storkhead-box protein 2 20121230 -9606 56978 PRDM8 - PFM5 HGNC:13993|Ensembl:ENSG00000152784|HPRD:17904|Vega:OTTHUMG00000160885 4 4q21 PR domain containing 8 protein-coding PRDM8 PR domain containing 8 O PR domain zinc finger protein 8|PR domain-containing protein 8|PR-domain containing protein 8 20121230 -9606 56979 PRDM9 - MEISETZ|MSBP3|PFM6|PRMD9|ZNF899 HGNC:13994|MIM:609760|Ensembl:ENSG00000164256|HPRD:17905|Vega:OTTHUMG00000161918 5 5p14 PR domain containing 9 protein-coding PRDM9 PR domain containing 9 O PR domain zinc finger protein 9|histone-lysine N-methyltransferase PRDM9|minisatellite binding protein 3 (115kD)|minisatellite binding protein 3, 115kDa 20121230 -9606 56980 PRDM10 - PFM7 HGNC:13995|Ensembl:ENSG00000170325|HPRD:11455|Vega:OTTHUMG00000165762 11 11q25 PR domain containing 10 protein-coding PRDM10 PR domain containing 10 O PR domain zinc finger protein 10|PR domain-containing protein 10|PR-domain family member 7|PRDM zinc finger transcription factor|tristanin 20121230 -9606 56981 PRDM11 - PFM8 HGNC:13996|Ensembl:ENSG00000019485|HPRD:11456|Vega:OTTHUMG00000166478 11 11p11 PR domain containing 11 protein-coding PRDM11 PR domain containing 11 O PR domain-containing protein 11|PR-domain containing protein 11 20121230 -9606 56983 POGLUT1 MDS010 C3orf9|CLP46|KDELCL1|KTELC1|MDSRP|Rumi|hCLP46 HGNC:22954|Ensembl:ENSG00000163389|HPRD:17475|Vega:OTTHUMG00000159379 3 3q13.33 protein O-glucosyltransferase 1 protein-coding POGLUT1 protein O-glucosyltransferase 1 O 9630046K23Rik|CAP10-like 46 kDa protein|CAP10-like protein, 46 kDa|KDELC family like 1|KTEL (Lys-Tyr-Glu-Leu) containing 1|KTEL motif-containing protein 1|myelodysplastic syndromes relative protein|x 010 protein 20121230 -9606 56984 PSMG2 - CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 HGNC:24929|MIM:609702|Ensembl:ENSG00000128789|HPRD:11638|Vega:OTTHUMG00000131703 18 18p11.21 proteasome (prosome, macropain) assembly chaperone 2 protein-coding PSMG2 proteasome (prosome, macropain) assembly chaperone 2 O CD40 ligand-activated specific transcript 3|HDCMC29P|HSPC260|PAC-2|hepatocellular carcinoma susceptibility protein|hepatocellular carcinoma-susceptibility protein 3|likely ortholog of mouse CD40 ligand-activated specific transcript 3 (Clast3)|proteasome assembling chaperone 2|proteasome assembly chaperone 2|tumor necrosis factor superfamily member 5-induced protein 1|tumor necrosis factor superfamily, member 5-induced protein 1|x 003 protein 20121230 -9606 56985 ADPRM MDS006 C17orf48|NBLA03831 HGNC:30925|Ensembl:ENSG00000170222|HPRD:17473|Vega:OTTHUMG00000130366 17 17p13.1 ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent protein-coding ADPRM ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent O ADP-ribose/CDP-alcohol pyrophosphatase|ADPRibase-Mn|CDP-choline phosphohydrolase|manganese-dependent ADP-ribose/CDP-alcohol diphosphatase 20121230 -9606 56986 DTWD1 MDS009 - HGNC:30926|Ensembl:ENSG00000104047|HPRD:17474|Vega:OTTHUMG00000131567 15 15q21.2 DTW domain containing 1 protein-coding DTWD1 DTW domain containing 1 O DTW domain-containing protein 1|x 009 protein 20121230 -9606 56987 BBX - HBP2|HSPC339|MDS001 HGNC:14422|Ensembl:ENSG00000114439|HPRD:10688|Vega:OTTHUMG00000150360 3 3q13.1 bobby sox homolog (Drosophila) protein-coding BBX bobby sox homolog (Drosophila) O HMG box transcription factor BBX|HMG box-containing protein 2|x 001 protein 20121230 -9606 56990 CDC42SE2 - SPEC2 HGNC:18547|Ensembl:ENSG00000158985|HPRD:16695|Vega:OTTHUMG00000162692 5 5q31.1 CDC42 small effector 2 protein-coding CDC42SE2 CDC42 small effector 2 O CDC42 small effector protein 2|non-kinase Cdc42 effector protein SPEC2|small effector of CDC42 protein 2 20121230 -9606 56992 KIF15 - HKLP2|KNSL7|NY-BR-62 HGNC:17273|Ensembl:ENSG00000163808|HPRD:10037|Vega:OTTHUMG00000156307 3 3p21.31 kinesin family member 15 protein-coding KIF15 kinesin family member 15 O kinesin-like 7|kinesin-like protein 2|kinesin-like protein 7|kinesin-like protein KIF15|serologically defined breast cancer antigen NY-BR-62 20121230 -9606 56993 TOMM22 - 1C9-2|MST065|MSTP065|TOM22 HGNC:18002|MIM:607046|Ensembl:ENSG00000100216|HPRD:06130|Vega:OTTHUMG00000150991 22 22q12-q13 translocase of outer mitochondrial membrane 22 homolog (yeast) protein-coding TOMM22 translocase of outer mitochondrial membrane 22 homolog (yeast) O mitochondrial import receptor Tom22|mitochondrial import receptor subunit TOM22 homolog|translocase of outer membrane 22 kDa subunit homolog 20121230 -9606 56994 CHPT1 MSTP022 CPT|CPT1 HGNC:17852|Ensembl:ENSG00000111666|HPRD:13052|Vega:OTTHUMG00000170443 12 12q choline phosphotransferase 1 protein-coding CHPT1 choline phosphotransferase 1 O AAPT1-like protein|cholinephosphotransferase 1|cholinephosphotransferase 1 alpha|diacylglycerol cholinephosphotransferase 1|hCPT1|phosphatidylcholine synthesizing enzyme 20121230 -9606 56995 TULP4 RP3-442A17.1 TUSP HGNC:15530|Ensembl:ENSG00000130338|HPRD:18246|Vega:OTTHUMG00000015910 6 6q25-q26 tubby like protein 4 protein-coding TULP4 tubby like protein 4 O tubby super-family protein|tubby superfamily protein|tubby-like protein 4|tubby-related protein 4 20121230 -9606 56996 SLC12A9 - CCC6|CIP1|WO3.3|hCCC6 HGNC:17435|Ensembl:ENSG00000146828|HPRD:11564|Vega:OTTHUMG00000156045 7 7q22 solute carrier family 12 (potassium/chloride transporters), member 9 protein-coding SLC12A9 solute carrier family 12 (potassium/chloride transporters), member 9 O CCC-interacting protein 1|cation-chloride cotransporter 6|cation-chloride cotransporter-interacting protein 1|potassium-chloride transporter 9|solute carrier family 12 member 9 20121230 -9606 56997 ADCK3 PP265 ARCA2|CABC1|COQ10D4|COQ8|SCAR9 HGNC:16812|MIM:606980|Ensembl:ENSG00000163050|HPRD:07375|Vega:OTTHUMG00000037621 1 1q42.13 aarF domain containing kinase 3 protein-coding ADCK3 aarF domain containing kinase 3 O aarF domain-containing protein kinase 3|chaperone activity of bc1 complex-like, mitochondrial|chaperone, ABC1 activity of bc1 complex homolog|coenzyme Q8 homolog 20121230 -9606 56998 CTNNBIP1 RP11-84A14.1 ICAT HGNC:16913|MIM:607758|Ensembl:ENSG00000178585|HPRD:09677|Vega:OTTHUMG00000001796 1 1p36.22 catenin, beta interacting protein 1 protein-coding CTNNBIP1 catenin, beta interacting protein 1 O beta-catenin-interacting protein 1|beta-catenin-interacting protein ICAT|inhibitor of beta-catenin and Tcf-4 20121230 -9606 56999 ADAMTS9 - - HGNC:13202|MIM:605421|Ensembl:ENSG00000163638|HPRD:05662|Vega:OTTHUMG00000158722 3 3p14.1 ADAM metallopeptidase with thrombospondin type 1 motif, 9 protein-coding ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 O A disintegrin and metalloproteinase with thrombospondin motifs 9|ADAM-TS 9|ADAM-TS9|ADAMTS-9|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9 20121230 -9606 57000 GSN-AS1 - C9orf31|MOST2 HGNC:23372 9 9q33.2 GSN antisense RNA 1 unknown GSN-AS1 GSN antisense RNA 1 O - 20121216 -9606 57001 ACN9 DC11 - HGNC:21752|Ensembl:ENSG00000196636|HPRD:16471|Vega:OTTHUMG00000154064 7 7q21.3 ACN9 homolog (S. cerevisiae) protein-coding ACN9 ACN9 homolog (S. cerevisiae) O protein ACN9 homolog, mitochondrial 20121230 -9606 57002 YAE1D1 GK003 C7orf36 HGNC:24857|Ensembl:ENSG00000241127|HPRD:16669|Vega:OTTHUMG00000128689 7 7p14.1 Yae1 domain containing 1 protein-coding YAE1D1 Yae1 domain containing 1 O yae1 domain-containing protein 1 20121230 -9606 57003 CCDC47 GK001 MSTP041 HGNC:24856|Ensembl:ENSG00000108588|HPRD:17041|Vega:OTTHUMG00000178933 17 17q23.3 coiled-coil domain containing 47 protein-coding CCDC47 coiled-coil domain containing 47 O coiled-coil domain-containing protein 47 20121230 -9606 57004 UNGP1 - - HGNC:18579 16 16q12.1 uracil-DNA glycosylase pseudogene 1 pseudo UNGP1 uracil-DNA glycosylase pseudogene 1 O - 20121230 -9606 57005 UNGP2 - - HGNC:18580 14 14q12 uracil-DNA glycosylase pseudogene 2 pseudo UNGP2 uracil-DNA glycosylase pseudogene 2 O - 20121230 -9606 57007 CXCR7 - CMKOR1|CXC-R7|CXCR-7|GPR159|RDC-1|RDC1 HGNC:23692|MIM:610376|Ensembl:ENSG00000144476|HPRD:09882|Vega:OTTHUMG00000133295 2 2q37.3 chemokine (C-X-C motif) receptor 7 protein-coding CXCR7 chemokine (C-X-C motif) receptor 7 O C-X-C chemokine receptor type 7|G protein-coupled receptor|G-protein coupled receptor 159|G-protein coupled receptor RDC1 homolog|chemokine orphan receptor 1 20121230 -9606 57008 RLFP1 - RLFP HGNC:16738 4 4q26 rearranged L-myc fusion pseudogene 1 pseudo RLFP1 rearranged L-myc fusion pseudogene 1 O - 20121230 -9606 57009 PTS-P1 - - - 9 9p13-p12 6-pyruvoyltetrahydropterin synthase pseudogene pseudo - - - - 20121230 -9606 57010 CABP4 - CSNB2B HGNC:1386|MIM:608965|Ensembl:ENSG00000175544|HPRD:12344|Vega:OTTHUMG00000168033 11 11q13.2 calcium binding protein 4 protein-coding CABP4 calcium binding protein 4 O calcium-binding protein 4 20121230 -9606 57016 AKR1B10 - AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI HGNC:382|MIM:604707|Ensembl:ENSG00000198074|HPRD:05271|Vega:OTTHUMG00000155356 7 7q33 aldo-keto reductase family 1, member B10 (aldose reductase) protein-coding AKR1B10 aldo-keto reductase family 1, member B10 (aldose reductase) O ARP|SI reductase|aldo-keto reductase family 1 member B10|aldo-keto reductase family 1, member B11 (aldose reductase-like)|aldose reductase-like 1|aldose reductase-like peptide|aldose reductase-related protein|hARP|small intestine reductase 20121230 -9606 57017 COQ9 HSPC326 C16orf49|COQ10D5 HGNC:25302|MIM:612837|Ensembl:ENSG00000088682|HPRD:13157|Vega:OTTHUMG00000176582 16 16q21 coenzyme Q9 homolog (S. cerevisiae) protein-coding COQ9 coenzyme Q9 homolog (S. cerevisiae) O ubiquinone biosynthesis protein COQ9, mitochondrial 20121230 -9606 57018 CCNL1 BM-001 ANIA6A|PRO1073|ania-6a HGNC:20569|MIM:613384|Ensembl:ENSG00000163660|HPRD:10814|Vega:OTTHUMG00000158713 3 3q25.31 cyclin L1 protein-coding CCNL1 cyclin L1 O cyclin L ania-6a|cyclin L gamma|cyclin-L|cyclin-L1 20121230 -9606 57019 CIAPIN1 CUA001 2810413N20Rik|Anamorsin|DRE2|PRO0915 HGNC:28050|MIM:608943|Ensembl:ENSG00000005194|HPRD:12338|Vega:OTTHUMG00000133457 16 16q21 cytokine induced apoptosis inhibitor 1 protein-coding CIAPIN1 cytokine induced apoptosis inhibitor 1 O anamorsin|cytokine-induced apoptosis inhibitor 1|fe-S cluster assembly protein DRE2 homolog|predicted protein of HQ0915 20121230 -9606 57020 C16orf62 101F10.2 - HGNC:24641|Ensembl:ENSG00000103544|HPRD:14455|Vega:OTTHUMG00000167925 16 16p12.3 chromosome 16 open reading frame 62 protein-coding C16orf62 chromosome 16 open reading frame 62 O UPF0505 protein C16orf62|esophageal cancer associated protein|esophageal cancer-associated protein 20121230 -9606 57026 PDXP RP1-37E16.5 CIN|PLP|dJ37E16.5 HGNC:30259|MIM:609246|Ensembl:ENSG00000241360|Vega:OTTHUMG00000044618 22 22q12.3 pyridoxal (pyridoxine, vitamin B6) phosphatase protein-coding PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase O PLP phosphatase|chronophin|pyridoxal phosphate phosphatase 20121230 -9606 57030 SLC17A7 - BNPI|VGLUT1 HGNC:16704|MIM:605208|Ensembl:ENSG00000104888|HPRD:05551 19 19q13 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 protein-coding SLC17A7 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 O brain-specific Na(+)-dependent inorganic phosphate cotransporter|brain-specific Na-dependent inorganic phosphate cotransporter|solute carrier family 17 member 7|vesicular glutamate transporter 1 20121230 -9606 57035 C1orf63 HT033 DJ465N24.2.1|NPD014|RP3-465N24.4 HGNC:25234|Ensembl:ENSG00000117616|HPRD:14835|Vega:OTTHUMG00000043611 1 1p36.13-p35.1 chromosome 1 open reading frame 63 protein-coding C1orf63 chromosome 1 open reading frame 63 O UPF0471 protein C1orf63 20121230 -9606 57037 ANKMY2 - ZMYND20 HGNC:25370|Ensembl:ENSG00000106524|HPRD:12454|Vega:OTTHUMG00000090806 7 7p21 ankyrin repeat and MYND domain containing 2 protein-coding ANKMY2 ankyrin repeat and MYND domain containing 2 O ankyrin repeat and MYND domain-containing protein 2 20121230 -9606 57038 RARS2 RP3-382I10.6 ArgRS|DALRD2|PCH6|PRO1992|RARSL|dJ382I10.6 HGNC:21406|MIM:611524|Ensembl:ENSG00000146282|HPRD:15209|Vega:OTTHUMG00000015178 6 6q16.1 arginyl-tRNA synthetase 2, mitochondrial protein-coding RARS2 arginyl-tRNA synthetase 2, mitochondrial O arginine--tRNA ligase|arginine-tRNA ligase|probable arginine--tRNA ligase, mitochondrial|probable arginyl-tRNA synthetase, mitochondrial 20121230 -9606 57042 IBD7 - - HGNC:14242|MIM:605225 1 1p36 inflammatory bowel disease 7 unknown IBD7 inflammatory bowel disease 7 O - 20120622 -9606 57044 IDDM18 - - HGNC:5372|MIM:605598 5 5q31.1-q33.1 insulin-dependent diabetes mellitus 18 unknown IDDM18 insulin-dependent diabetes mellitus 18 O - 20120622 -9606 57045 TWSG1 PSEC0250 TSG HGNC:12429|MIM:605049|Ensembl:ENSG00000128791|HPRD:05443|Vega:OTTHUMG00000131597 18 18p11.3 twisted gastrulation homolog 1 (Drosophila) protein-coding TWSG1 twisted gastrulation homolog 1 (Drosophila) O twisted gastrulation protein homolog 1 20121230 -9606 57046 HRES2 - - - - - HTLV-1 related endogenous sequence 2 protein-coding - - - - 20100404 -9606 57047 PLSCR2 - - HGNC:16494|MIM:607610|Ensembl:ENSG00000163746|HPRD:09621|Vega:OTTHUMG00000159429 3 3q24 phospholipid scramblase 2 protein-coding PLSCR2 phospholipid scramblase 2 O PL scramblase 2|ca(2+)-dependent phospholipid scramblase 2 20121230 -9606 57048 PLSCR3 - - HGNC:16495|MIM:607611|Ensembl:ENSG00000187838|HPRD:07400|Vega:OTTHUMG00000178169 17 17p13.1 phospholipid scramblase 3 protein-coding PLSCR3 phospholipid scramblase 3 O PL scramblase 3|ca(2+)-dependent phospholipid scramblase 3 20121230 -9606 57050 UTP3 - CRL1|CRLZ1|SAS10 HGNC:24477|MIM:611614|Ensembl:ENSG00000132467|HPRD:18016|Vega:OTTHUMG00000129911 4 4q13.3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) protein-coding UTP3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) O UTP3 homolog|charged amino acid rich leucine zipper 1 homolog|charged amino acid-rich leucine zipper 1|disrupter of silencing 10|disrupter of silencing SAS10|something about silencing protein 10 20121230 -9606 57051 NAG18 - - - 19 19q13.4 NAG18 mRNA unknown - - - - 20111109 -9606 57053 CHRNA10 - - HGNC:13800|MIM:606372|Ensembl:ENSG00000129749|HPRD:09395|Vega:OTTHUMG00000011844 11 11p15.5 cholinergic receptor, nicotinic, alpha 10 (neuronal) protein-coding CHRNA10 cholinergic receptor, nicotinic, alpha 10 (neuronal) O NACHR alpha-10|acetylcholine receptor, nicotinic, alpha 10 (neuronal)|cholinergic receptor, nicotinic, alpha polypeptide 10|neuronal acetylcholine receptor subunit alpha-10|nicotinic acetylcholine receptor subunit alpha-10 20121230 -9606 57054 DAZ3 - pDP1679 HGNC:15965|MIM:400027|Ensembl:ENSG00000187191|HPRD:15959|Vega:OTTHUMG00000045099 Y Yq11.223 deleted in azoospermia 3 protein-coding DAZ3 deleted in azoospermia 3 O deleted in azoospermia protein 3 20121230 -9606 57055 DAZ2 - pDP1678 HGNC:15964|MIM:400026|Ensembl:ENSG00000205944|HPRD:11848|Vega:OTTHUMG00000044060 Y Yq11.223 deleted in azoospermia 2 protein-coding DAZ2 deleted in azoospermia 2 O deleted in azoospermia protein 2 20121220 -9606 57057 TBX20 - ASD4 HGNC:11598|MIM:606061|Ensembl:ENSG00000164532|HPRD:06931|Vega:OTTHUMG00000099411 7 7p14.3 T-box 20 protein-coding TBX20 T-box 20 O T-box protein 20|T-box transcription factor TBX20 20121230 -9606 57060 PCBP4 - CBP|LIP4|MCG10 HGNC:8652|MIM:608503|Ensembl:ENSG00000090097|HPRD:16343|Vega:OTTHUMG00000157366 3 3p21 poly(rC) binding protein 4 protein-coding PCBP4 poly(rC) binding protein 4 O LYST-interacting protein|RNA binding protein MCG10|alpha-CP4|poly(rC)-binding protein 4 20121230 -9606 57061 HYMAI - NCRNA00020 HGNC:5326|MIM:606546 6 6q24.2 hydatidiform mole associated and imprinted (non-protein coding) miscRNA HYMAI hydatidiform mole associated and imprinted (non-protein coding) O - 20121230 -9606 57062 DDX24 - - HGNC:13266|MIM:606181|Ensembl:ENSG00000089737|HPRD:05860|Vega:OTTHUMG00000171301 14 14q32 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 protein-coding DDX24 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 O ATP-dependent RNA helicase DDX24|DEAD box protein 24|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24|S. cerevisiae CHL1-like helicase 20121230 -9606 57082 CASC5 - AF15Q14|CT29|D40|KNL1|MCPH4|PPP1R55|hKNL-1|hSpc105 HGNC:24054|MIM:609173|Ensembl:ENSG00000137812|HPRD:10634|Vega:OTTHUMG00000166532 15 15q14 cancer susceptibility candidate 5 protein-coding CASC5 cancer susceptibility candidate 5 O ALL1-fused gene from chromosome 15q14 protein|blinkin, bub-linking kinetochore protein|bub-linking kinetochore protein|cancer susceptibility candidate gene 5 protein|cancer/testis antigen 29|kinetochore null 1 homolog|kinetochore-null protein 1|protein CASC5|protein phosphatase 1, regulatory subunit 55 20121230 -9606 57084 SLC17A6 - DNPI|VGLUT2 HGNC:16703|MIM:607563|Ensembl:ENSG00000091664|HPRD:10459|Vega:OTTHUMG00000166063 11 11p14.3 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 protein-coding SLC17A6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 O differentiation-associated BNPI|differentiation-associated Na(+)-dependent inorganic phosphate cotransporter|differentiation-associated Na-dependent inorganic phosphate cotransporter|solute carrier family 17 member 6|vesicular glutamate transporter 2 20121230 -9606 57085 AGTRAP RP11-56N19.3 ATRAP HGNC:13539|MIM:608729|Ensembl:ENSG00000177674|HPRD:16379|Vega:OTTHUMG00000002230 1 1p36.22 angiotensin II receptor-associated protein protein-coding AGTRAP angiotensin II receptor-associated protein O AT1 receptor-associated protein|ATI receptor-associated protein|angiotensin II, type I receptor-associated protein|type-1 angiotensin II receptor-associated protein 20121230 -9606 57088 PLSCR4 GIG43 TRA1 HGNC:16497|MIM:607612|Ensembl:ENSG00000114698|HPRD:07401|Vega:OTTHUMG00000159415 3 3q24 phospholipid scramblase 4 protein-coding PLSCR4 phospholipid scramblase 4 O Ca(2+)-dependent phospholipid scramblase 4|PL scramblase 4|cell growth inhibiting protein 43 20121230 -9606 57089 ENTPD7 - LALP1|RP11-483F11.1 HGNC:19745|Ensembl:ENSG00000198018|HPRD:10939|Vega:OTTHUMG00000018888 10 - ectonucleoside triphosphate diphosphohydrolase 7 protein-coding ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 O NTPDase 7|lysosomal apyrase-like protein 1 20121230 -9606 57091 CASS4 - C20orf32|CAS4|HEFL|HEPL HGNC:15878|Ensembl:ENSG00000087589|HPRD:09842|Vega:OTTHUMG00000032788 20 20q13.31 Cas scaffolding protein family member 4 protein-coding CASS4 Cas scaffolding protein family member 4 O HEF-like protein|HEF1-EFS-p130Cas-like protein|cas scaffolding protein family member 4 20121230 -9606 57092 PCNP - - HGNC:30023|Ensembl:ENSG00000081154|HPRD:17826|Vega:OTTHUMG00000159108 3 3q12.3 PEST proteolytic signal containing nuclear protein protein-coding PCNP PEST proteolytic signal containing nuclear protein O PEST proteolytic signal-containing nuclear protein|PEST-containing nuclear protein 20121230 -9606 57093 TRIM49 - RNF18|TRIM49A|TRIM49L2 HGNC:13431|MIM:606124|Ensembl:ENSG00000168930|HPRD:05840|Vega:OTTHUMG00000167634 11 11p11.12-q12 tripartite motif containing 49 protein-coding TRIM49 tripartite motif containing 49 O ring finger protein 18|testis-specific RING Finger protein|testis-specific ring-finger protein|tripartite motif-containing 49|tripartite motif-containing protein 49 20121230 -9606 57094 CPA6 - CPAH|ETL5|FEB11 HGNC:17245|MIM:609562|Ensembl:ENSG00000165078|HPRD:09891|Vega:OTTHUMG00000164575 8 8q13.2 carboxypeptidase A6 protein-coding CPA6 carboxypeptidase A6 O carboxypeptidase B 20121230 -9606 57095 PITHD1 AD039 C1orf128|HT014|RP5-886K2.4|TXNL1CL HGNC:25022|Ensembl:ENSG00000057757|HPRD:13717|Vega:OTTHUMG00000002960 1 1p36.11 PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1 protein-coding PITHD1 PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1 O HT014|PITH domain-containing protein 1|TXNL1 C-terminal like 20121230 -9606 57096 RPGRIP1 - CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d HGNC:13436|MIM:605446|Ensembl:ENSG00000092200|HPRD:05673|Vega:OTTHUMG00000170758 14 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 protein-coding RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 O RPGR-interacting protein 1|X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 20121230 -9606 57097 PARP11 - ARTD11|C12orf6 HGNC:1186|Ensembl:ENSG00000111224|HPRD:15101|Vega:OTTHUMG00000156442 12 12p13.3 poly (ADP-ribose) polymerase family, member 11 protein-coding PARP11 poly (ADP-ribose) polymerase family, member 11 O ADP-ribosyltransferase diphtheria toxin-like 11|MIB006|PARP-11|poly [ADP-ribose] polymerase 11 20121230 -9606 57099 AVEN - PDCD12 HGNC:13509|MIM:605265|Ensembl:ENSG00000169857|HPRD:05588|Vega:OTTHUMG00000129371 15 15q13.1 apoptosis, caspase activation inhibitor protein-coding AVEN apoptosis, caspase activation inhibitor O cell death regulator Aven|programmed cell death 12 20121230 -9606 57101 ANO2 - C12orf3|TMEM16B HGNC:1183|MIM:610109|Ensembl:ENSG00000047617|HPRD:11634|Vega:OTTHUMG00000168264 12 12p13.3 anoctamin 2 protein-coding ANO2 anoctamin 2 O anoctamin-2|transmembrane protein 16B (eight membrane-spanning domains) 20121230 -9606 57102 C12orf4 - - HGNC:1184|Ensembl:ENSG00000047621|HPRD:12609|Vega:OTTHUMG00000168258 12 12p13.3 chromosome 12 open reading frame 4 protein-coding C12orf4 chromosome 12 open reading frame 4 O uncharacterized protein C12orf4 20121230 -9606 57103 C12orf5 - FR2BP|TIGAR HGNC:1185|MIM:610775|Ensembl:ENSG00000078237|HPRD:12610|Vega:OTTHUMG00000168124 12 12p13.3 chromosome 12 open reading frame 5 protein-coding C12orf5 chromosome 12 open reading frame 5 O TP53-induced glycolysis and apoptosis regulator|fructose-2,6-bisphosphatase TIGAR|fructose-2,6-bisphosphate 2-phosphatase|probable fructose-2,6-bisphosphatase TIGAR|transactivated by NS3TP2 protein 20121230 -9606 57104 PNPLA2 FP17548 1110001C14Rik|ATGL|PEDF-R|TTS-2.2|TTS2|iPLA2zeta HGNC:30802|MIM:609059|Ensembl:ENSG00000177666|HPRD:11443|Vega:OTTHUMG00000133309 11 11p15.5 patatin-like phospholipase domain containing 2 protein-coding PNPLA2 patatin-like phospholipase domain containing 2 O IPLA2-zeta|TTS2.2|adipose triglyceride lipase|calcium-independent phospholipase A2|desnutrin|patatin-like phospholipase domain-containing protein 2|pigment epithelium-derived factor|transport-secretion protein 2.2|triglyceride hydrolase 20121230 -9606 57105 CYSLTR2 PSEC0146 CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21 HGNC:18274|MIM:605666|Ensembl:ENSG00000152207|HPRD:09293|Vega:OTTHUMG00000016906 13 13q14.2 cysteinyl leukotriene receptor 2 protein-coding CYSLTR2 cysteinyl leukotriene receptor 2 O G protein-coupled receptor|G-protein coupled receptor GPCR21|G-protein coupled receptor HG57|cysteinyl leukotriene CysLT2 receptor 20121230 -9606 57106 NAT14 - KLP1 HGNC:28918|Ensembl:ENSG00000090971|HPRD:10036|Vega:OTTHUMG00000180854 19 19q13.42 N-acetyltransferase 14 (GCN5-related, putative) protein-coding NAT14 N-acetyltransferase 14 (GCN5-related, putative) O K562 cell-derived leucine-zipper-like protein 1|K562 cells-derived leucine zipper-like protein 1|K562 cells-derived leucine-zipper-like protein 1|N-acetyltransferase 14 20121230 -9606 57107 PDSS2 RP11-59I9.3 C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1 HGNC:23041|MIM:610564|Ensembl:ENSG00000164494|HPRD:12879|Vega:OTTHUMG00000059359 6 6q21 prenyl (decaprenyl) diphosphate synthase, subunit 2 protein-coding PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2 O all-trans-decaprenyl-diphosphate synthase subunit 2|decaprenyl pyrophosphate synthase subunit 2|decaprenyl pyrophosphate synthetase subunit 2|decaprenyl-diphosphate synthase subunit 2|subunit 2 of decaprenyl diphosphate synthase 20121230 -9606 57108 SETD8P1 - SET07p|SET7 HGNC:30088 13 13q11-q13 SET domain containing 8 pseudogene 1 pseudo SETD8P1 SET domain containing 8 pseudogene 1 O - 20121230 -9606 57109 REXO4 RP11-244N20.5 REX4|XPMC2|XPMC2H HGNC:12820|MIM:602930|Ensembl:ENSG00000148300|HPRD:04239|Vega:OTTHUMG00000020870 9 9q34.2 REX4, RNA exonuclease 4 homolog (S. cerevisiae) protein-coding REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) O RNA exonuclease 4|XPMC2 prevents mitotic catastrophe 2 homolog|Xenopus prevents mitotic catastrophe 2 homolog|Xenopus prevents mitotic catatrophe 2 homolog|exonuclease XPMC2|hPMC2|prevents mitotic catastrophe 2 protein homolog 20121230 -9606 57110 HRASLS - A-C1|H-REV107|HRASLS1|HSD28 HGNC:14922|MIM:606487|Ensembl:ENSG00000127252|HPRD:07577|Vega:OTTHUMG00000156104 3 3q29 HRAS-like suppressor protein-coding HRASLS HRAS-like suppressor O H-REV107 protein-related protein|phospholipase A|phospholipid-metabolizing enzyme A-C1 20121230 -9606 57111 RAB25 - CATX-8|RAB11C HGNC:18238|MIM:612942|Ensembl:ENSG00000132698|HPRD:06698|Vega:OTTHUMG00000017457 1 1q22 RAB25, member RAS oncogene family protein-coding RAB25 RAB25, member RAS oncogene family O ras-related protein Rab-25 20121230 -9606 57113 TRPC7 - TRP7 HGNC:20754|Ensembl:ENSG00000069018|HPRD:18228|Vega:OTTHUMG00000162035 5 5q31.1 transient receptor potential cation channel, subfamily C, member 7 protein-coding TRPC7 transient receptor potential cation channel, subfamily C, member 7 O TRP-7|hTRP7|likley ortholog of mouse transient receptor potential cation channel, subfamily C, member 7|putative capacitative calcium channel|short transient receptor potential channel 7|transient receptor protein 7 20121230 -9606 57115 PGLYRP4 SBBI67 PGLYRPIbeta|PGRP-Ibeta|PGRPIB HGNC:30015|MIM:608198|Ensembl:ENSG00000163218|HPRD:16298|Vega:OTTHUMG00000037057 1 1q21 peptidoglycan recognition protein 4 protein-coding PGLYRP4 peptidoglycan recognition protein 4 O PGRP-I-beta|peptidoglycan recognition protein I beta|peptidoglycan recognition protein I-beta|peptidoglycan recognition protein intermediate beta|peptidoglycan recognition protein-I-beta 20121230 -9606 57116 ZNF695 - RP11-551G24.1|SBZF3 HGNC:30954|Ensembl:ENSG00000197472|HPRD:11534|Vega:OTTHUMG00000040707 1 1q44 zinc finger protein 695 protein-coding ZNF695 zinc finger protein 695 O zinc finger protein SBZF3 20121230 -9606 57117 INTS12 SBBI22 INT12|PHF22 HGNC:25067|MIM:611355|Ensembl:ENSG00000138785|HPRD:11271|Vega:OTTHUMG00000131215 4 4q24 integrator complex subunit 12 protein-coding INTS12 integrator complex subunit 12 O PHD finger protein 22|hypothetical nuclear factor SBBI22 20121230 -9606 57118 CAMK1D RP11-462F15.1 CKLiK|CaM-K1|CaMKID HGNC:19341|MIM:607957|Ensembl:ENSG00000183049|HPRD:06409|Vega:OTTHUMG00000017683 10 10p13 calcium/calmodulin-dependent protein kinase ID protein-coding CAMK1D calcium/calmodulin-dependent protein kinase ID O CaM kinase ID|CamKI-like protein kinase|caM kinase I delta|caM-KI delta|caMKI delta|calcium/calmodulin-dependent protein kinase type 1D 20121230 -9606 57119 EPPIN RP3-461P17.1 CT71|CT72|SPINLW1|WAP7|WFDC7|dJ461P17.2 HGNC:15932|MIM:609031|Ensembl:ENSG00000101448|HPRD:10615|Vega:OTTHUMG00000032588 20 20q13.12 epididymal peptidase inhibitor protein-coding EPPIN epididymal peptidase inhibitor O WAP four-disulfide core domain protein 7|cancer/testis antigen 71|cancer/testis antigen 72|epididymal protease inhibitor|eppin|protease inhibitor WAP7|serine peptidase inhibitor-like, with Kunitz and WAP domains 1 (eppin) 20121230 -9606 57120 GOPC - CAL|FIG|GOPC1|PIST|dJ94G16.2 HGNC:17643|MIM:606845|Ensembl:ENSG00000047932|HPRD:06024|Vega:OTTHUMG00000015457 6 6q21 golgi-associated PDZ and coiled-coil motif containing protein-coding GOPC golgi-associated PDZ and coiled-coil motif containing O CFTR-associated ligand|Golgi associated PDZ and coiled-coil motif containing protein|Golgi-associated PDZ and coiled-coil motif-containing protein|PDZ protein interacting specifically with TC10|PDZ/coiled-coil domain binding partner for the rho-family GTPase TC10|dJ94G16.2 PIST|fused in glioblastoma 20121230 -9606 57121 LPAR5 - GPR92|GPR93|KPG_010|LPA5 HGNC:13307|MIM:606926|Ensembl:ENSG00000184574|HPRD:09495|Vega:OTTHUMG00000168713 12 12p13.31 lysophosphatidic acid receptor 5 protein-coding LPAR5 lysophosphatidic acid receptor 5 O G protein-coupled receptor 92|G-protein coupled receptor 92|G-protein coupled receptor 93|LPA receptor 5|LPA-5 20121230 -9606 57122 NUP107 - NUP84 HGNC:29914|MIM:607617|Ensembl:ENSG00000111581|HPRD:06356|Vega:OTTHUMG00000169265 12 12q15 nucleoporin 107kDa protein-coding NUP107 nucleoporin 107kDa O 107 kDa nucleoporin|nuclear pore complex protein Nup107|nucleoporin Nup107 20121230 -9606 57124 CD248 - CD164L1|TEM1 HGNC:18219|MIM:606064|Ensembl:ENSG00000174807|HPRD:06933|Vega:OTTHUMG00000167073 11 11q13 CD248 molecule, endosialin protein-coding CD248 CD248 molecule, endosialin O 2610111G01Rik|CD164 sialomucin-like 1|CD248 antigen, endosialin|endosialin|tumor endothelial marker 1 20121230 -9606 57125 PLXDC1 - TEM3|TEM7 HGNC:20945|MIM:606826|Ensembl:ENSG00000161381|HPRD:08439|Vega:OTTHUMG00000133183 17 17q21.1 plexin domain containing 1 protein-coding PLXDC1 plexin domain containing 1 O 2410003I07Rik|plexin domain-containing protein 1|tumor endothelial marker 3|tumor endothelial marker 7 20121230 -9606 57126 CD177 UNQ595/PRO1181 HNA-2a|HNA2A|NB1|NB1 GP|PRV-1|PRV1 HGNC:30072|MIM:162860|HPRD:01222 19 19q13.2 CD177 molecule protein-coding CD177 CD177 molecule O CD177 antigen|NB1 glycoprotein|cell surface receptor|human neutrophil alloantigen 2a|polycythemia rubra vera 1|polycythemia rubra vera protein 1 20121230 -9606 57127 RHBG RP11-139I14.1 SLC42A2 HGNC:14572|MIM:607079|Ensembl:ENSG00000132677|HPRD:06152|Vega:OTTHUMG00000024057 1 1q21.3 Rh family, B glycoprotein (gene/pseudogene) protein-coding RHBG Rh family, B glycoprotein (gene/pseudogene) O Rh type B glycoprotein|Rhesus blood group, B glycoprotein|ammonium transporter Rh type B 20121230 -9606 57128 LYRM4 - C6orf149|CGI-203|ISD11 HGNC:21365|MIM:613311|Ensembl:ENSG00000214113|HPRD:12855|Vega:OTTHUMG00000014173 6 6p25.1 LYR motif containing 4 protein-coding LYRM4 LYR motif containing 4 O LYR motif-containing protein 4|homolog of yeast Isd11|mitochondrial matrix Nfs1 interacting protein 20121230 -9606 57129 MRPL47 CGI-204 L47mt|MRP-L47|NCM1 HGNC:16652|MIM:611852|Ensembl:ENSG00000136522|HPRD:14766|Vega:OTTHUMG00000157784 3 3q26.33 mitochondrial ribosomal protein L47 protein-coding MRPL47 mitochondrial ribosomal protein L47 O 39S ribosomal protein L47, mitochondrial|nasopharyngeal carcinoma metastasis-related 1|nasopharyngeal carcinoma metastasis-related protein 1 20121230 -9606 57130 ATP13A1 CGI-152 ATP13A HGNC:24215|Ensembl:ENSG00000105726|HPRD:12501|Vega:OTTHUMG00000153016 19 19p13.11 ATPase type 13A1 protein-coding ATP13A1 ATPase type 13A1 O cation transporting ATPase|probable cation-transporting ATPase 13A1 20121230 -9606 57132 CHMP1B - C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 HGNC:24287|MIM:606486|Ensembl:ENSG00000255112|HPRD:12106|Vega:OTTHUMG00000165820 18 18p11.21 charged multivesicular body protein 1B protein-coding CHMP1B charged multivesicular body protein 1B O charged multivesicular body protein 1b|chromatin modifying protein 1B|chromatin-modifying protein 1b|vacuolar protein sorting 46-2|vacuolar protein sorting-associated protein 46-2 20121230 -9606 57134 MAN1C1 - HMIC|MAN1A3|MAN1C|pp6318 HGNC:19080|Ensembl:ENSG00000117643|HPRD:14354|Vega:OTTHUMG00000004417 1 1p35 mannosidase, alpha, class 1C, member 1 protein-coding MAN1C1 mannosidase, alpha, class 1C, member 1 O 1,2-alpha-mannosidase IC|mannosyl-oligosaccharide 1,2-alpha-mannosidase IC|processing alpha-1,2-mannosidase IC 20121230 -9606 57135 DAZ4 - pDP1680|pDP1681 HGNC:15966|Ensembl:ENSG00000205916|HPRD:13117|Vega:OTTHUMG00000045100 Y Yq11.223 deleted in azoospermia 4 protein-coding DAZ4 deleted in azoospermia 4 O deleted in azoospermia protein 4 20121230 -9606 57136 APMAP RP4-568C11.2 BSCv|C20orf3 HGNC:13238|Ensembl:ENSG00000101474|HPRD:09840|Vega:OTTHUMG00000032107 20 20p11.2 adipocyte plasma membrane associated protein protein-coding APMAP adipocyte plasma membrane associated protein O adipocyte plasma membrane-associated protein|protein BSCv 20121230 -9606 57139 RGL3 - - HGNC:30282|Ensembl:ENSG00000205517|Vega:OTTHUMG00000172898 19 19p13.2 ral guanine nucleotide dissociation stimulator-like 3 protein-coding RGL3 ral guanine nucleotide dissociation stimulator-like 3 O RalGEF-like protein 3, mouse homolog|ralGDS-like 3 20121230 -9606 57140 RNPEPL1 - - HGNC:10079|MIM:605287|Ensembl:ENSG00000142327|HPRD:07545|Vega:OTTHUMG00000133357 2 2q37.3 arginyl aminopeptidase (aminopeptidase B)-like 1 protein-coding RNPEPL1 arginyl aminopeptidase (aminopeptidase B)-like 1 O RNPEP-like 1|argininyl aminopeptidase-like 1|arginyl aminopeptidase-like 1 20121230 -9606 57142 RTN4 My043 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C HGNC:14085|MIM:604475|Ensembl:ENSG00000115310|HPRD:07259|Vega:OTTHUMG00000129337 2 2p16.3 reticulon 4 protein-coding RTN4 reticulon 4 O Human NogoA|My043 protein|foocen|neurite growth inhibitor 220|neurite outgrowth inhibitor|neuroendocrine-specific protein C homolog|reticulon 5|reticulon-4 20121230 -9606 57143 ADCK1 - - HGNC:19038|Ensembl:ENSG00000063761|HPRD:10630|Vega:OTTHUMG00000171520 14 14q24.3 aarF domain containing kinase 1 protein-coding ADCK1 aarF domain containing kinase 1 O uncharacterized aarF domain-containing protein kinase 1 20121230 -9606 57144 PAK7 RP5-1119D9.3 PAK5 HGNC:15916|MIM:608038|Ensembl:ENSG00000101349|HPRD:06423|Vega:OTTHUMG00000031857 20 20p12 p21 protein (Cdc42/Rac)-activated kinase 7 protein-coding PAK7 p21 protein (Cdc42/Rac)-activated kinase 7 O PAK-5|PAK-7|p21(CDKN1A)-activated kinase 7|p21-activated kinase 5|p21-activated kinase 7|p21CDKN1A-activated kinase 7|protein kinase PAK5|serine/threonine-protein kinase PAK 7|serine/threonine-protein kinase PAK7 20121230 -9606 57146 TMEM159 - PROMETHIN HGNC:30136|MIM:611304|Ensembl:ENSG00000011638|HPRD:17428|Vega:OTTHUMG00000131559 16 16p12 transmembrane protein 159 protein-coding TMEM159 transmembrane protein 159 O promethin 20121230 -9606 57147 SCYL3 RP1-97P20.2 PACE-1|PACE1 HGNC:19285|MIM:608192|Ensembl:ENSG00000000457|HPRD:07459|Vega:OTTHUMG00000035941 1 1q24.2 SCY1-like 3 (S. cerevisiae) protein-coding SCYL3 SCY1-like 3 (S. cerevisiae) O SCY1-like protein 3|ezrin-binding partner PACE-1 (PACE-1)|ezrin-binding protein PACE-1|protein-associating with the carboxyl-terminal domain of ezrin 20121230 -9606 57148 RALGAPB RP5-1100H13.1 KIAA1219|RalGAPbeta|dJ1100H13.1 HGNC:29221|Ensembl:ENSG00000170471|HPRD:11133|Vega:OTTHUMG00000140270 20 20q11.23 Ral GTPase activating protein, beta subunit (non-catalytic) protein-coding RALGAPB Ral GTPase activating protein, beta subunit (non-catalytic) O p170|ral GTPase-activating protein beta subunit|ral GTPase-activating protein subunit beta 20121230 -9606 57149 LYRM1 - A211C6.1 HGNC:25074|MIM:614709|Ensembl:ENSG00000102897|HPRD:14254|Vega:OTTHUMG00000131554 16 16p11.2 LYR motif containing 1 protein-coding LYRM1 LYR motif containing 1 O LYR motif-containing protein 1 20121230 -9606 57150 SMIM8 DC18 C6orf162|dJ102H19.2 HGNC:21401|Ensembl:ENSG00000111850|HPRD:12862|Vega:OTTHUMG00000015168 6 6q15-q16.1 small integral membrane protein 8 protein-coding SMIM8 small integral membrane protein 8 O UPF0708 protein C6orf162 20121230 -9606 57151 LYZL6 UNQ754/PRO1485 LYC1|PRO1485|TKAL754|UNQ754 HGNC:29614|MIM:612751|Ensembl:ENSG00000161572|HPRD:14339|Vega:OTTHUMG00000132998 17 17q11.2 lysozyme-like 6 protein-coding LYZL6 lysozyme-like 6 O lysozyme homolog|lysozyme-like protein 6 20121230 -9606 57152 SLURP1 - ANUP|ARS|ArsB|LY6LS|MDM HGNC:18746|MIM:606119|Ensembl:ENSG00000126233|HPRD:05836|Vega:OTTHUMG00000164685 8 8q24.3 secreted LY6/PLAUR domain containing 1 protein-coding SLURP1 secreted LY6/PLAUR domain containing 1 O ARS(component B)-81/S|SLURP-1|anti-neoplastic urinary protein|lymphocyte antigen 6-like secreted|secreted Ly-6/uPAR-related protein 1|secreted Ly6/uPAR related protein 1 20121230 -9606 57153 SLC44A2 PSEC0210 CTL2|PP1292 HGNC:17292|MIM:606106|Ensembl:ENSG00000129353|HPRD:16198|Vega:OTTHUMG00000180585 19 19p13.1 solute carrier family 44, member 2 protein-coding SLC44A2 solute carrier family 44, member 2 O choline transporter-like protein 2 20121230 -9606 57154 SMURF1 - - HGNC:16807|MIM:605568|Ensembl:ENSG00000198742|HPRD:06902|Vega:OTTHUMG00000150272 7 7q22.1 SMAD specific E3 ubiquitin protein ligase 1 protein-coding SMURF1 SMAD specific E3 ubiquitin protein ligase 1 O E3 ubiquitin ligase SMURF1|E3 ubiquitin-protein ligase SMURF1|SMAD-specific E3 ubiquitin-protein ligase 1|Smad ubiquitination regulatory factor 1|Smad-specific E3 ubiquitin ligase 1|hSMURF1 20121230 -9606 57156 TMEM63C - C14orf171 HGNC:23787|Ensembl:ENSG00000165548|HPRD:16617|Vega:OTTHUMG00000171557 14 14q24.3 transmembrane protein 63C protein-coding TMEM63C transmembrane protein 63C O - 20121230 -9606 57157 PHTF2 - - HGNC:13411|Ensembl:ENSG00000006576|HPRD:15130|Vega:OTTHUMG00000155557 7 7q11.23-q21 putative homeodomain transcription factor 2 protein-coding PHTF2 putative homeodomain transcription factor 2 O - 20121230 -9606 57158 JPH2 - CMH17|JP-2|JP2 HGNC:14202|MIM:605267|Ensembl:ENSG00000149596|HPRD:12006|Vega:OTTHUMG00000033037 20 20q13.12 junctophilin 2 protein-coding JPH2 junctophilin 2 O junctophilin type 2|junctophilin-2 20121230 -9606 57159 TRIM54 - MURF|MURF-3|RNF30|muRF3 HGNC:16008|MIM:606474|Ensembl:ENSG00000138100|HPRD:05928|Vega:OTTHUMG00000097078 2 2p23.3 tripartite motif containing 54 protein-coding TRIM54 tripartite motif containing 54 O muscle-specific RING finger protein 3|muscle-specific RING-finger protein 3|ring finger protein 30|tripartite motif-containing 54|tripartite motif-containing protein 54 20121230 -9606 57160 TBX23P - TBX23 HGNC:11601 1 - T-box 23, pseudogene pseudo TBX23P T-box 23, pseudogene O - 20110419 -9606 57161 PELI2 - - HGNC:8828|MIM:614798|Ensembl:ENSG00000139946|HPRD:17835|Vega:OTTHUMG00000152336 14 14q21 pellino E3 ubiquitin protein ligase family member 2 protein-coding PELI2 pellino E3 ubiquitin protein ligase family member 2 O E3 ubiquitin-protein ligase pellino homolog 2|pellino homolog 2|pellino-2|protein pellino homolog 2 20121230 -9606 57162 PELI1 - - HGNC:8827|MIM:614797|Ensembl:ENSG00000197329|HPRD:17834|Vega:OTTHUMG00000129511 2 2p13.3 pellino E3 ubiquitin protein ligase 1 protein-coding PELI1 pellino E3 ubiquitin protein ligase 1 O E3 ubiquitin-protein ligase pellino homolog 1|pellino homolog 1|pellino-1|pellino-related intracellular-signaling molecule|protein pellino homolog 1 20121230 -9606 57165 GJC2 - CX46.6|Cx47|GJA12|HLD2|LMPH1C|PMLDAR|SPG44 HGNC:17494|MIM:608803|Ensembl:ENSG00000198835|HPRD:10582|Vega:OTTHUMG00000039771 1 1q42.13 gap junction protein, gamma 2, 47kDa protein-coding GJC2 gap junction protein, gamma 2, 47kDa O connexin-46.6|connexin-47|gap junction alpha-12 protein|gap junction gamma-2 protein 20121230 -9606 57167 SALL4 - DRRS|HSAL4|ZNF797|dJ1112F19.1 HGNC:15924|MIM:607343|Ensembl:ENSG00000101115|HPRD:08458|Vega:OTTHUMG00000032752 20 20q13.2 sal-like 4 (Drosophila) protein-coding SALL4 sal-like 4 (Drosophila) O sal-like protein 4|zinc finger protein 797|zinc finger protein SALL4 20121230 -9606 57168 ASPHD2 CTB-1048E9.3 - HGNC:30437|Ensembl:ENSG00000128203|HPRD:14255|Vega:OTTHUMG00000150884 22 22q12.1 aspartate beta-hydroxylase domain containing 2 protein-coding ASPHD2 aspartate beta-hydroxylase domain containing 2 O aspartate beta-hydroxylase domain-containing protein 2 20121230 -9606 57169 ZNFX1 RP4-686N3.1404-002 - HGNC:29271|Ensembl:ENSG00000124201|HPRD:11142|Vega:OTTHUMG00000032696 20 20q13.13 zinc finger, NFX1-type containing 1 protein-coding ZNFX1 zinc finger, NFX1-type containing 1 O NFX1-type zinc finger-containing protein 1 20121230 -9606 57171 DOLPP1 RP11-167N5.4 LSFR2 HGNC:29565|MIM:614516|Ensembl:ENSG00000167130|HPRD:16835|Vega:OTTHUMG00000020771 9 9q34.1 dolichyl pyrophosphate phosphatase 1 protein-coding DOLPP1 dolichyl pyrophosphate phosphatase 1 O dolichyldiphosphatase 1|linked to Surfeit genes in Fugu rubripes 2 20121230 -9606 57172 CAMK1G RP1-272L16.2 CLICKIII|VWS1|dJ272L16.1 HGNC:14585|MIM:614994|Ensembl:ENSG00000008118|HPRD:10807|Vega:OTTHUMG00000036361 1 1q32.2 calcium/calmodulin-dependent protein kinase IG protein-coding CAMK1G calcium/calmodulin-dependent protein kinase IG O CLICK III|caM kinase I gamma|caM kinase IG|caM-KI gamma|caMK-like CREB kinase III|caMKI gamma|caMKIG|calcium/calmodulin-dependent protein kinase type 1G 20121230 -9606 57175 CORO1B - CORONIN-2 HGNC:2253|MIM:609849|Ensembl:ENSG00000172725|HPRD:16743|Vega:OTTHUMG00000167775 11 11q13.2 coronin, actin binding protein, 1B protein-coding CORO1B coronin, actin binding protein, 1B O coronin-1B 20121230 -9606 57176 VARS2 DADB-160J14.3 G7a|VARS2L|VARSL HGNC:21642|MIM:612802|Ensembl:ENSG00000137411|HPRD:11670|Vega:OTTHUMG00000031263 6 6p21.33 valyl-tRNA synthetase 2, mitochondrial protein-coding VARS2 valyl-tRNA synthetase 2, mitochondrial O valRS|valine tRNA ligase 2, mitochondrial (putative)|valine--tRNA ligase, mitochondrial|valyl-tRNA synthetase 2, mitochondrial (putative)|valyl-tRNA synthetase like|valyl-tRNA synthetase, mitochondrial 20121230 -9606 57178 ZMIZ1 RP11-519K18.1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 HGNC:16493|MIM:607159|Ensembl:ENSG00000108175|HPRD:12115|Vega:OTTHUMG00000018560 10 10q22.3 zinc finger, MIZ-type containing 1 protein-coding ZMIZ1 zinc finger, MIZ-type containing 1 O FLJ00092 protein|RP11-519K18.1|retinoic acid induced 17|zinc finger MIZ domain-containing protein 1|zinc finger-containing, Miz1, PIAS-like protein on chromosome 10 20121230 -9606 57179 KIAA1191 - p60MONOX HGNC:29209|Ensembl:ENSG00000122203|HPRD:13839|Vega:OTTHUMG00000130656 5 5q35.2 KIAA1191 protein-coding KIAA1191 KIAA1191 O brain-derived rescue factor p60MONOX|flavine monooxygenase motif-containing protein of 33 kDa|putative monooxygenase p33MONOX 20121230 -9606 57180 ACTR3B - ARP11|ARP3BETA HGNC:17256|Ensembl:ENSG00000133627|HPRD:12489|Vega:OTTHUMG00000151463 7 7q36.1 ARP3 actin-related protein 3 homolog B (yeast) protein-coding ACTR3B ARP3 actin-related protein 3 homolog B (yeast) O ARP3-beta|actin-like protein 3B|actin-related protein 3-beta|actin-related protein 3B|actin-related protein ARP4|actin-related protein Arp11 20121230 -9606 57181 SLC39A10 - LZT-Hs2 HGNC:20861|MIM:608733|Ensembl:ENSG00000196950|HPRD:10572|Vega:OTTHUMG00000154380 2 2q32.3 solute carrier family 39 (zinc transporter), member 10 protein-coding SLC39A10 solute carrier family 39 (zinc transporter), member 10 O ZIP-10|solute carrier family 39 (metal ion transporter), member 10|solute carrier family 39 member 10|zinc transporter ZIP10|zrt- and Irt-like protein 10 20121230 -9606 57182 ANKRD50 - - HGNC:29223|Ensembl:ENSG00000151458|HPRD:13843|Vega:OTTHUMG00000161398 4 4q28.1 ankyrin repeat domain 50 protein-coding ANKRD50 ankyrin repeat domain 50 O ankyrin repeat domain-containing protein 50 20121230 -9606 57184 FAM219B - C15orf17 HGNC:24695|Ensembl:ENSG00000178761|HPRD:12667|Vega:OTTHUMG00000172715 15 15q24.1 family with sequence similarity 219, member B protein-coding FAM219B family with sequence similarity 219, member B O protein FAM219B|uncharacterized protein C15orf17 20121230 -9606 57185 NIPAL3 RP3-462O23.3 DJ462O23.2|NPAL3 HGNC:25233|Ensembl:ENSG00000001461|HPRD:13149|Vega:OTTHUMG00000003299 1 1p36.12-p35.1 NIPA-like domain containing 3 protein-coding NIPAL3 NIPA-like domain containing 3 O NIPA-like protein 3 20121230 -9606 57186 RALGAPA2 RP11-470C13.2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 HGNC:16207|Ensembl:ENSG00000188559|Vega:OTTHUMG00000032010 20 20p11.22 Ral GTPase activating protein, alpha subunit 2 (catalytic) protein-coding RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) O 250 kDa substrate of Akt|RapGAPalpha2|akt substrate AS250|ral GTPase-activating protein alpha subunit 2|ral GTPase-activating protein subunit alpha-2 20121230 -9606 57187 THOC2 RP5-1189B24.5 CXorf3|THO2|dJ506G2.1|hTREX120 HGNC:19073|MIM:300395|Ensembl:ENSG00000125676|HPRD:02317|Vega:OTTHUMG00000022334 X Xq25-q26.3 THO complex 2 protein-coding THOC2 THO complex 2 O THO complex subunit 2 20121230 -9606 57188 ADAMTSL3 - - HGNC:14633|MIM:609199|Ensembl:ENSG00000156218|HPRD:12426|Vega:OTTHUMG00000147363 15 15q25.2 ADAMTS-like 3 protein-coding ADAMTSL3 ADAMTS-like 3 O ADAMTS-like protein 3|ADAMTSL-3|a disintegrin-like and metalloprotease domain with thrombospondin type I motifs-like 3|punctin-2 20121230 -9606 57189 KIAA1147 - LCHN|PRO2561 HGNC:29472|Ensembl:ENSG00000257093|Vega:OTTHUMG00000157539 7 7q34 KIAA1147 protein-coding KIAA1147 KIAA1147 O predicted protein of HQ2561|protein LCHN 20121230 -9606 57190 SEPN1 - CFTD|MDRS1|RSMD1|RSS|SELN HGNC:15999|MIM:606210|Ensembl:ENSG00000162430|HPRD:05867|Vega:OTTHUMG00000007375 1 1p36.13 selenoprotein N, 1 protein-coding SEPN1 selenoprotein N, 1 O selenoprotein N 20121230 -9606 57191 VN1R1 - V1RL1|VNR19I1|ZVNH1|ZVNR1 HGNC:13548|MIM:605234|Ensembl:ENSG00000178201|HPRD:05571 19 19q13.4 vomeronasal 1 receptor 1 protein-coding VN1R1 vomeronasal 1 receptor 1 O G-protein coupled receptor GPCR24|V1R-like 1|V1r-like receptor 1|V3r-related gene protein|hGPCR24|vomeronasal olfactory receptor chromosome 19 subtype I member 1|vomeronasal olfactory receptor, (chromosome 19) subtype I, member 1|vomeronasal type-1 receptor 1 20121230 -9606 57192 MCOLN1 MSTP080 MG-2|ML4|MLIV|MST080|TRP-ML1|TRPM-L1|TRPML1 HGNC:13356|MIM:605248|Ensembl:ENSG00000090674|HPRD:05582 19 19p13.2 mucolipin 1 protein-coding MCOLN1 mucolipin 1 O mucolipidin|mucolipidosis type IV protein|mucolipin-1 20121230 -9606 57194 ATP10A - ATP10C|ATPVA|ATPVC HGNC:13542|MIM:605855|Ensembl:ENSG00000206190|HPRD:05790|Vega:OTTHUMG00000171703 15 15q11.2 ATPase, class V, type 10A protein-coding ATP10A ATPase, class V, type 10A O ATPase type IV, phospholipid transporting (P-type)|ATPase, Class V, type 10C|aminophospholipid translocase VA|phospholipid-transporting ATPase VA|probable phospholipid-transporting ATPase VA 20121230 -9606 57198 ATP8B2 RP11-350G8.2 ATPID HGNC:13534|MIM:605867|Ensembl:ENSG00000143515|HPRD:05794|Vega:OTTHUMG00000035979 1 1q21.3 ATPase, aminophospholipid transporter, class I, type 8B, member 2 protein-coding ATP8B2 ATPase, aminophospholipid transporter, class I, type 8B, member 2 O ATPase, class I, type 8B, member 2|phospholipid-transporting ATPase ID|probable phospholipid-transporting ATPase ID 20121230 -9606 57205 ATP10D - ATPVD HGNC:13549|Ensembl:ENSG00000145246|HPRD:16518|Vega:OTTHUMG00000160784 4 4p12 ATPase, class V, type 10D protein-coding ATP10D ATPase, class V, type 10D O probable phospholipid-transporting ATPase VD|type IV aminophospholipid transporting ATPase 20121230 -9606 57209 ZNF248 RP11-162G10.6 bA162G10.3 HGNC:13041|Ensembl:ENSG00000198105|HPRD:15757|Vega:OTTHUMG00000017980 10 10p11.2 zinc finger protein 248 protein-coding ZNF248 zinc finger protein 248 O KRAB protein domain|Kruppel-type zinc finger protein|bA162G10.3 (zinc finger protein) 20121230 -9606 57210 SLC45A4 - - HGNC:29196|Ensembl:ENSG00000022567|Vega:OTTHUMG00000164393 8 8q24.3 solute carrier family 45, member 4 protein-coding SLC45A4 solute carrier family 45, member 4 O solute carrier family 45 member 4 20121230 -9606 57211 GPR126 - APG1|DREG|PS1TP2|VIGR HGNC:13841|MIM:612243|Ensembl:ENSG00000112414|HPRD:17059|Vega:OTTHUMG00000015709 6 6q24.1 G protein-coupled receptor 126 protein-coding GPR126 G protein-coupled receptor 126 O G-protein coupled receptor 126|HBV PreS1-transactivated protein 2|developmentally regulated G-protein-coupled receptor|vascular inducible G protein-coupled receptor|vascular-inducible G protein-coupled receptor 20121230 -9606 57212 TP73-AS1 - KIAA0495|PDAM HGNC:29052|HPRD:13803 1 1p36.32 TP73 antisense RNA 1 miscRNA TP73-AS1 TP73 antisense RNA 1 O - 20121230 -9606 57213 SPRYD7 - C13orf1|CLLD6 HGNC:14297|MIM:607866|Ensembl:ENSG00000123178|HPRD:08486|Vega:OTTHUMG00000016924 13 13q14 SPRY domain containing 7 protein-coding SPRYD7 SPRY domain containing 7 O CLL deletion region gene 6 protein|SPRY domain-containing protein 7|chronic lymphocytic leukemia deletion region gene 6 protein 20121230 -9606 57214 KIAA1199 - CCSP1|TMEM2L HGNC:29213|MIM:608366|Ensembl:ENSG00000103888|HPRD:10519|Vega:OTTHUMG00000144184 15 15q24 KIAA1199 protein-coding KIAA1199 KIAA1199 O colon cancer secreted protein 1|protein KIAA1199 20121230 -9606 57215 THAP11 HRIHFB2206 CTG-B43a|CTG-B45d|RONIN HGNC:23194|MIM:609119|Ensembl:ENSG00000168286|HPRD:11629|Vega:OTTHUMG00000137546 16 16q22.1 THAP domain containing 11 protein-coding THAP11 THAP domain containing 11 O THAP domain-containing protein 11 20121230 -9606 57216 VANGL2 - LPP1|LTAP|STB1|STBM|STBM1 HGNC:15511|MIM:600533|Ensembl:ENSG00000162738|HPRD:02758|Vega:OTTHUMG00000033122 1 1q22-q23 vang-like 2 (van gogh, Drosophila) protein-coding VANGL2 vang-like 2 (van gogh, Drosophila) O loop-tail protein 1 homolog|loop-tail-associated protein|strabismus 1|van Gogh-like protein 2|vang-like protein 2 20121230 -9606 57217 TTC7A - TTC7 HGNC:19750|MIM:609332|Ensembl:ENSG00000068724|HPRD:18239|Vega:OTTHUMG00000153121 2 2p21 tetratricopeptide repeat domain 7A protein-coding TTC7A tetratricopeptide repeat domain 7A O TPR repeat protein 7A|tetratricopeptide repeat protein 7A 20121230 -9606 57221 KIAA1244 RP1-171N11.1 A7322|ARFGEF3|BIG3|C6orf92|PPP1R33|dJ171N11.1 HGNC:21213|Ensembl:ENSG00000112379|HPRD:13845|Vega:OTTHUMG00000015670 6 6q23.3 KIAA1244 protein-coding KIAA1244 KIAA1244 O brefeldin A-inhibited guanine nucleotide-exchange protein 3|protein phosphatase 1, regulatory subunit 33 20121230 -9606 57222 ERGIC1 HT034 ERGIC-32|ERGIC32|NET24 HGNC:29205|Ensembl:ENSG00000113719|HPRD:13836|Vega:OTTHUMG00000130520 5 5q35.1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein-coding ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 O ER-Golgi intermediate compartment 32 kDa protein|endoplasmic reticulum-Golgi intermediate compartment protein 1|endoplasmic reticulum-golgi intermediate compartment 32 kDa protein 20121230 -9606 57223 SMEK2 - FLFL2|PP4R3B|PSY2|smk1 HGNC:29267|MIM:610352|Ensembl:ENSG00000138041|HPRD:13854|Vega:OTTHUMG00000129336 2 2p16.1 SMEK homolog 2, suppressor of mek1 (Dictyostelium) protein-coding SMEK2 SMEK homolog 2, suppressor of mek1 (Dictyostelium) O serine/threonine-protein phosphatase 4 regulatory subunit 3B 20121230 -9606 57224 NHSL1 - C6orf63 HGNC:21021|Ensembl:ENSG00000135540|Vega:OTTHUMG00000016321 6 6q23.3 NHS-like 1 protein-coding NHSL1 NHS-like 1 O NHS-like protein 1 20121230 -9606 57226 LYRM2 - DJ122O8.2 HGNC:25229|Ensembl:ENSG00000083099|HPRD:13146|Vega:OTTHUMG00000015203 6 6q15 LYR motif containing 2 protein-coding LYRM2 LYR motif containing 2 O LYR motif-containing protein 2 20121230 -9606 57228 SMAGP - hSMAGP HGNC:26918|Ensembl:ENSG00000170545|HPRD:14256 12 12q13.13 small cell adhesion glycoprotein protein-coding SMAGP small cell adhesion glycoprotein O small cell transmembrane and glycosylated protein|small trans-membrane and glycosylated protein|small transmembrane and glycosylated protein 20121230 -9606 57231 SNX14 RP11-321N4.2 RGS-PX2 HGNC:14977|Ensembl:ENSG00000135317|HPRD:11590|Vega:OTTHUMG00000015140 6 6q14.3 sorting nexin 14 protein-coding SNX14 sorting nexin 14 O sorting nexin-14 20121230 -9606 57232 ZNF630 RP1-54B20.2 dJ54B20.2 HGNC:28855|MIM:300819|Ensembl:ENSG00000221994|Vega:OTTHUMG00000021463 X Xp11.3-p11.1 zinc finger protein 630 protein-coding ZNF630 zinc finger protein 630 O dJ54B20.2 (novel KRAB box containing C2H2 type zinc finger protein) 20121230 -9606 57234 FAM91A2 - - HGNC:29050 1 1q21.1 family with sequence similarity 91, member A2 miscRNA FAM91A2 family with sequence similarity 91, member A2 O - 20121230 -9606 57235 KIAA0485 - - - - - uncharacterized LOC57235 unknown - - - - 20121018 -9606 57242 KIAA0509 - - - - - uncharacterized LOC57242 unknown - - - - 20120508 -9606 57282 SLC4A10 - NBCn2|NCBE HGNC:13811|MIM:605556|Ensembl:ENSG00000144290|Vega:OTTHUMG00000153938 2 2q24.2 solute carrier family 4, sodium bicarbonate transporter, member 10 protein-coding SLC4A10 solute carrier family 4, sodium bicarbonate transporter, member 10 O sodium-driven chloride bicarbonate exchanger|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 20121230 -9606 57289 IGHV7-4-1 - IGHV7-41|IGHV741 HGNC:5665|IMGT/GENE-DB:IGHV7-4-1 14 14q32.33 immunoglobulin heavy variable 7-4-1 other IGHV7-4-1 immunoglobulin heavy variable 7-4-1 O - 20111109 -9606 57290 IGHV3-30-3 - IGHV3-3|IGHV3303 HGNC:5593|IMGT/GENE-DB:IGHV3-30-3 14 14q32.33 immunoglobulin heavy variable 3-30-3 other IGHV3-30-3 immunoglobulin heavy variable 3-30-3 O - 20120114 -9606 57291 DANCR - ANCR|KIAA0114|SNHG13 HGNC:28964|MIM:614625 4 4q12 differentiation antagonizing non-protein coding RNA miscRNA DANCR differentiation antagonizing non-protein coding RNA O - 20121230 -9606 57292 KIR2DL5A XXbac-BCX195L8.5 CD158F|KIR2DL5|KIR2DL5.1|KIR2DL5.3|KIR2DL5B HGNC:16345|MIM:605305|HPRD:05603 19 19p13.3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5A protein-coding KIR2DL5A killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5A O killer cell immunoglobulin-like receptor 2DL5A|killer cell immunoglobulin-like receptor KIR2DL5A|killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5|killer-cell Ig-like receptor 20121222 -9606 57306 SDTY1 - SD1 MIM:185900 2 2q34-q36 Syndactyly, type I unknown - - - - 20120622 -9606 57309 SPG14 - - HGNC:13730|MIM:605229 3 3q27-q28 spastic paraplegia 14 (autosomal recessive) unknown SPG14 spastic paraplegia 14 (autosomal recessive) O - 20120622 -9606 57324 TSE2 - - MIM:601136 2 - transsuppressor of expression 2 unknown - - - - 20100404 -9606 57325 CSRP2BP RP4-717M23.1 ATAC2|CRP2BP|KAT14|PRO1194|dJ717M23.1 HGNC:15904|Ensembl:ENSG00000149474|HPRD:16765|Vega:OTTHUMG00000031962 20 20p11.23 CSRP2 binding protein protein-coding CSRP2BP CSRP2 binding protein O ADA2A-containing complex subunit 2|ATAC component 2 homolog|CRP2 binding partner|CRP2 binding protein|CSRP2-binding protein|cysteine-rich protein 2-binding protein 20121230 -9606 57326 PBXIP1 RP11-307C12.2 HPIP HGNC:21199|Ensembl:ENSG00000163346|HPRD:17823|Vega:OTTHUMG00000037369 1 1q21.3 pre-B-cell leukemia homeobox interacting protein 1 protein-coding PBXIP1 pre-B-cell leukemia homeobox interacting protein 1 O hematopoietic PBX-interacting protein|pre-B-cell leukemia transcription factor interacting protein 1|pre-B-cell leukemia transcription factor-interacting protein 1 20121230 -9606 57332 CBX8 - PC3|RC1 HGNC:15962|Ensembl:ENSG00000141570|HPRD:13006|Vega:OTTHUMG00000150416 17 17q25.3 chromobox homolog 8 protein-coding CBX8 chromobox homolog 8 O Pc class 3 homolog|chromobox homolog 8 (Pc class homolog, Drosophila)|chromobox protein homolog 8|polycomb 3|rectachrome 1 20121230 -9606 57333 RCN3 UNQ239/PRO272 RLP49 HGNC:21145|Ensembl:ENSG00000142552|HPRD:17962 19 19q13.33 reticulocalbin 3, EF-hand calcium binding domain protein-coding RCN3 reticulocalbin 3, EF-hand calcium binding domain O EF-hand calcium-binding protein RLP49|reticulocabin|reticulocalbin-3 20121230 -9606 57335 ZNF286A - ZNF286 HGNC:13501|Ensembl:ENSG00000187607|Ensembl:ENSG00000255104|HPRD:15760|Vega:OTTHUMG00000059066|Vega:OTTHUMG00000166448 17 17p11.2 zinc finger protein 286A protein-coding ZNF286A zinc finger protein 286A O zinc finger protein 286|zinc finger protein ZNF286 20121230 -9606 57336 ZNF287 - ZKSCAN13 HGNC:13502|Ensembl:ENSG00000141040|HPRD:11703|Vega:OTTHUMG00000058993 17 17p11.2 zinc finger protein 287 protein-coding ZNF287 zinc finger protein 287 O zinc finger protein with KRAB and SCAN domains 13 20121230 -9606 57337 SENP7 - - HGNC:30402|MIM:612846|Ensembl:ENSG00000138468|HPRD:07154|Vega:OTTHUMG00000149927 3 3q12 SUMO1/sentrin specific peptidase 7 protein-coding SENP7 SUMO1/sentrin specific peptidase 7 O SUMO-1-specific protease 2|SUMO1/sentrin specific protease 7|sentrin-specific protease 7|sentrin/SUMO-specific protease SENP7 20121230 -9606 57338 JPH3 - CAGL237|HDL2|JP-3|JP3|TNRC22 HGNC:14203|MIM:605268|Ensembl:ENSG00000154118|HPRD:05589|Vega:OTTHUMG00000137656 16 16q24.3 junctophilin 3 protein-coding JPH3 junctophilin 3 O junctophilin type 3|junctophilin-3|trinucleotide repeat containing 22 20121230 -9606 57343 ZNF304 - - HGNC:13505|MIM:613840|Ensembl:ENSG00000131845|HPRD:15766 19 19q13.4 zinc finger protein 304 protein-coding ZNF304 zinc finger protein 304 O - 20121230 -9606 57348 TTYH1 XXbac-BCX535A19.1 - HGNC:13476|MIM:605784|Ensembl:ENSG00000167614|HPRD:12043|Vega:OTTHUMG00000065544 19 19q13.4 tweety homolog 1 (Drosophila) protein-coding TTYH1 tweety homolog 1 (Drosophila) O hTTY1|protein tweety homolog 1 20121230 -9606 57369 GJD2 - CX36|GJA9 HGNC:19154|MIM:607058|Ensembl:ENSG00000159248|HPRD:09521|Vega:OTTHUMG00000129674 15 15q14 gap junction protein, delta 2, 36kDa protein-coding GJD2 gap junction protein, delta 2, 36kDa O connexin 36|connexin-36|gap junction alpha-9 protein|gap junction delta-2 protein 20121230 -9606 57379 AICDA - AID|ARP2|CDA2|HIGM2 HGNC:13203|MIM:605257|Ensembl:ENSG00000111732|HPRD:05585|Vega:OTTHUMG00000168676 12 12p13 activation-induced cytidine deaminase protein-coding AICDA activation-induced cytidine deaminase O cytidine aminohydrolase|integrated into Burkitt's lymphoma cell line Ramos 20121230 -9606 57380 MRS2 - HPT|MRS2L HGNC:13785|Ensembl:ENSG00000124532|HPRD:17603|Vega:OTTHUMG00000014355 6 6p22.3-p22.1 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) protein-coding MRS2 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) O MRS2-like protein|MRS2-like, magnesium homeostasis factor|magnesium transporter MRS2 homolog, mitochondrial 20121230 -9606 57381 RHOJ - ARHJ|RASL7B|TC10B|TCL HGNC:688|MIM:607653|Ensembl:ENSG00000126785|HPRD:09632|Vega:OTTHUMG00000140342 14 14q23.2 ras homolog family member J protein-coding RHOJ ras homolog family member J O RAS-like, family 7, member B|TC10-like Rho GTPase|ras homolog gene family, member J|ras-like protein family member 7B|rho-related GTP-binding protein RhoJ|tc10-like GTP-binding protein 20121230 -9606 57393 TMEM27 UNQ679/PRO1312 NX-17|NX17 HGNC:29437|MIM:300631|Ensembl:ENSG00000147003|HPRD:06668|Vega:OTTHUMG00000021181 X Xp22 transmembrane protein 27 protein-coding TMEM27 transmembrane protein 27 O 0610008J07Rik|collectrin|kidney-specific membrane protein 20121230 -9606 57396 CLK4 - - HGNC:13659|MIM:607969|Ensembl:ENSG00000113240|HPRD:12140|Vega:OTTHUMG00000130893 5 5q35 CDC-like kinase 4 protein-coding CLK4 CDC-like kinase 4 O dual specificity protein kinase CLK4|protein serine threonine kinase Clk4 20121230 -9606 57399 LOC57399 - - - 5 5q12.1 uncharacterized gastric protein ZA52P unknown - - - - 20120710 -9606 57402 S100A14 - BCMP84|S100A15 HGNC:18901|MIM:607986|Ensembl:ENSG00000189334|HPRD:10467|Vega:OTTHUMG00000035030 1 1q21.3 S100 calcium binding protein A14 protein-coding S100A14 S100 calcium binding protein A14 O S100 calcium-binding protein A14|S114|breast cancer membrane protein 84|protein S100-A14 20121230 -9606 57403 RAB22A - - HGNC:9764|MIM:612966|Ensembl:ENSG00000124209|HPRD:06696|Vega:OTTHUMG00000032844 20 20q13.32 RAB22A, member RAS oncogene family protein-coding RAB22A RAB22A, member RAS oncogene family O GTP-binding protein RAB22A|rab-22|ras-related protein Rab-22A 20121230 -9606 57404 CYP20A1 UNQ667/PRO1301 CYP-M HGNC:20576|Ensembl:ENSG00000119004|HPRD:07100|Vega:OTTHUMG00000132854 2 2q33.2 cytochrome P450, family 20, subfamily A, polypeptide 1 protein-coding CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 O cytochrome P450 20A1|cytochrome P450 monooxygenase 20121230 -9606 57405 SPC25 AD024 SPBC25|hSpc25 HGNC:24031|MIM:609395|Ensembl:ENSG00000152253|HPRD:15465|Vega:OTTHUMG00000132181 2 2q31.1 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) protein-coding SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) O 2600017H08Rik|kinetochore protein Spc25|spindle pole body component 25 homolog 20121230 -9606 57406 ABHD6 - - HGNC:21398|Ensembl:ENSG00000163686|HPRD:12407|Vega:OTTHUMG00000159150 3 3p14.3 abhydrolase domain containing 6 protein-coding ABHD6 abhydrolase domain containing 6 O 2-arachidonoylglycerol hydrolase|abhydrolase domain-containing protein 6|lipase protein|monoacylglycerol lipase ABHD6 20121230 -9606 57407 NMRAL1 - HSCARG|SDR48A1 HGNC:24987|Ensembl:ENSG00000153406|HPRD:13678|Vega:OTTHUMG00000129468 16 16p13.3 NmrA-like family domain containing 1 protein-coding NMRAL1 NmrA-like family domain containing 1 O nmrA-like family domain-containing protein 1|short chain dehydrogenase/reductase family 48A, member 1 20121230 -9606 57408 LRTM1 HT017 - HGNC:25023|Ensembl:ENSG00000144771|HPRD:13718|Vega:OTTHUMG00000158578 3 3p14.3 leucine-rich repeats and transmembrane domains 1 protein-coding LRTM1 leucine-rich repeats and transmembrane domains 1 O leucine-rich repeat and transmembrane domain-containing protein 1 20121230 -9606 57409 MIF4GD - AD023|MIFD|SLIP1 HGNC:24030|MIM:612072|Ensembl:ENSG00000125457|HPRD:10629|Vega:OTTHUMG00000179485 17 17q25.1 MIF4G domain containing protein-coding MIF4GD MIF4G domain containing O MIF4G domain-containing protein|SLBP (stem loop binding protein)-interacting protein 1|SLBP-interacting protein 1 20121230 -9606 57410 SCYL1 HT019 GKLP|NKTL|NTKL|P105|TAPK|TEIF|TRAP HGNC:14372|MIM:607982|Ensembl:ENSG00000142186|HPRD:06414|Vega:OTTHUMG00000166325 11 11q13 SCY1-like 1 (S. cerevisiae) protein-coding SCYL1 SCY1-like 1 (S. cerevisiae) O N-terminal kinase-like protein|SCY1-like protein 1|coated vesicle-associated kinase of 90 kDa|likely ortholog of mouse N-terminal kinase-like protein|telomerase regulation-associated protein|telomerase transcriptional element-interacting factor|telomerase transcriptional elements-interacting factor|teratoma-associated tyrosine kinase 20121230 -9606 57412 AS3MT RP11-753C18.6 CYT19 HGNC:17452|MIM:611806|Ensembl:ENSG00000214435|HPRD:16511|Vega:OTTHUMG00000018972 10 10q24.32 arsenic (+3 oxidation state) methyltransferase protein-coding AS3MT arsenic (+3 oxidation state) methyltransferase O S-adenosyl-L-methionine:arsenic(III) methyltransferase|S-adenosylmethionine:arsenic (III) methyltransferase|arsenite methyltransferase|methylarsonite methyltransferase|methyltransferase cyt19 20121230 -9606 57414 RHBDD2 - NPD007|RHBDL7 HGNC:23082|Ensembl:ENSG00000005486|HPRD:11492|Vega:OTTHUMG00000156435 7 7q11.23 rhomboid domain containing 2 protein-coding RHBDD2 rhomboid domain containing 2 O H_RG122E10.2a|H_RG122E10.2b|WUGSC:H_RG122E10.2a|WUGSC:H_RG122E10.2b|rhomboid domain-containing protein 2|rhomboid, veinlet-like 7 20121230 -9606 57415 C3orf14 HT021 - HGNC:25024|Ensembl:ENSG00000114405|HPRD:12819|Vega:OTTHUMG00000158704 3 3p14.2 chromosome 3 open reading frame 14 protein-coding C3orf14 chromosome 3 open reading frame 14 O uncharacterized protein C3orf14 20121230 -9606 57418 WDR18 - Ipi3|R32184_1 HGNC:17956|Ensembl:ENSG00000065268|HPRD:18296|Vega:OTTHUMG00000181903 19 19p13.3 WD repeat domain 18 protein-coding WDR18 WD repeat domain 18 O Involved in Processing ITS2 3 homolog|WD repeat-containing protein 18 20121230 -9606 57419 SLC24A3 RP1-122P22.1 NCKX3 HGNC:10977|MIM:609839|Ensembl:ENSG00000185052|HPRD:15352|Vega:OTTHUMG00000031993 20 20p13 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 protein-coding SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 O Na(+)/K(+)/Ca(2+)-exchange protein 3|sodium calcium exchanger|sodium/potassium/calcium exchanger 3|solute carrier family 24 member 3 20121230 -9606 57446 NDRG3 RP3-460J8.1 - HGNC:14462|MIM:605273|Ensembl:ENSG00000101079|HPRD:12007|Vega:OTTHUMG00000032398 20 20q11.21-q11.23 NDRG family member 3 protein-coding NDRG3 NDRG family member 3 O N-myc downstream-regulated gene 3 protein|protein NDRG3 20121230 -9606 57447 NDRG2 - SYLD HGNC:14460|MIM:605272|Ensembl:ENSG00000165795|HPRD:17630|Vega:OTTHUMG00000029619 14 14q11.2 NDRG family member 2 protein-coding NDRG2 NDRG family member 2 O N-myc downstream regulator 2|N-myc downstream-regulated gene 2 protein|NDR1-related protein NDR2|cytoplasmic protein Ndr1|protein NDRG2|syld709613 protein 20121230 -9606 57448 BIRC6 - APOLLON|BRUCE HGNC:13516|MIM:605638|Ensembl:ENSG00000115760|HPRD:05731|Vega:OTTHUMG00000150528 2 2p22.3 baculoviral IAP repeat containing 6 protein-coding BIRC6 baculoviral IAP repeat containing 6 O BIR repeat-containing ubiquitin-conjugating enzyme|baculoviral IAP repeat-containing 6|baculoviral IAP repeat-containing protein 6|ubiquitin-conjugating BIR domain enzyme apollon|ubiquitin-conjugating BIR-domain enzyme apollon 20121230 -9606 57449 PLEKHG5 RP4-650H14.3 DSMA4|GEF720|Syx|Tech HGNC:29105|MIM:611101|Ensembl:ENSG00000171680|HPRD:11104|Vega:OTTHUMG00000000905 1 1p36.31 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 protein-coding PLEKHG5 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 O NFkB activating protein|PH domain-containing family G member 5|guanine nucleotide exchange factor 720|novel PH domain-containing protein|pleckstrin homology domain containing family G member 5|pleckstrin homology domain-containing family G member 5|synectin-binding guanine exchange factor 20121230 -9606 57451 TENM2 - ODZ2|TEN-M2|TNM2 HGNC:29943|MIM:610119|Ensembl:ENSG00000145934|Vega:OTTHUMG00000162928 5 5q34 teneurin transmembrane protein 2 protein-coding TENM2 teneurin transmembrane protein 2 O neurestin alpha|odd Oz/ten-m homolog 2|odz, odd Oz/ten-m homolog 2|protein Odd Oz/ten-m homolog 2|ten-2|tenascin-M2|teneurin 2|teneurin-2 20121230 -9606 57452 GALNTL1 - GALNACT16|GALNT16 HGNC:23233|Ensembl:ENSG00000100626|HPRD:13562|Vega:OTTHUMG00000171231 14 14q24.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 protein-coding GALNTL1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 O UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 1|galNAc-T-like protein 1|polypeptide GalNAc transferase-like protein 1|polypeptide N-acetylgalactosaminyltransferase 16|pp-GaNTase-like protein 1|protein-UDP acetylgalactosaminyltransferase-like protein 1|putative polypeptide N-acetylgalactosaminyltransferase-like protein 1 20121230 -9606 57453 DSCAML1 - - HGNC:14656|MIM:611782|Ensembl:ENSG00000177103|HPRD:10921|Vega:OTTHUMG00000167071 11 11q23 Down syndrome cell adhesion molecule like 1 protein-coding DSCAML1 Down syndrome cell adhesion molecule like 1 O Down syndrome cell adhesion molecule-like protein 1|Downs syndrome cell adhesion molecule like 1|down syndrome cell adhesion molecule 2 20121230 -9606 57455 REXO1 - ELOABP1|EloA-BP1|REX1|TCEB3BP1 HGNC:24616|MIM:609614|Ensembl:ENSG00000079313|HPRD:15478|Vega:OTTHUMG00000179991 19 19p13.3 REX1, RNA exonuclease 1 homolog (S. cerevisiae) protein-coding REXO1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) O RNA exonuclease 1 homolog|elongin A binding protein 1|elongin A-binding protein 1|elongin-A-binding protein 1|transcription elongation factor B polypeptide 3 binding protein 1|transcription elongation factor B polypeptide 3-binding protein 1 20121230 -9606 57456 KIAA1143 - - HGNC:29198|Ensembl:ENSG00000163807|HPRD:13833|Vega:OTTHUMG00000133088 3 3p21.31 KIAA1143 protein-coding KIAA1143 KIAA1143 O uncharacterized protein KIAA1143 20121230 -9606 57458 TMCC3 - - HGNC:29199|Ensembl:ENSG00000057704|HPRD:15519|Vega:OTTHUMG00000170225 12 12q22 transmembrane and coiled-coil domain family 3 protein-coding TMCC3 transmembrane and coiled-coil domain family 3 O transmembrane and coiled-coil domains 3|transmembrane and coiled-coil domains protein 3 20121230 -9606 57459 GATAD2B - P66beta|RP11-216N14.6 HGNC:30778|MIM:614998|Ensembl:ENSG00000143614|HPRD:15094|Vega:OTTHUMG00000037162 1 1q21.3 GATA zinc finger domain containing 2B protein-coding GATAD2B GATA zinc finger domain containing 2B O GATA zinc finger domain-containing protein 2B|p66/p68|transcription repressor p66 beta component of the MeCP1 complex|transcriptional repressor p66-beta 20121230 -9606 57460 PPM1H - ARHCL1|NERPP-2C|URCC2 HGNC:18583|Ensembl:ENSG00000111110|Vega:OTTHUMG00000169990 12 12q14.1 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding PPM1H protein phosphatase, Mg2+/Mn2+ dependent, 1H O neurite extension-related protein phosphatase related to PP2C|protein phosphatase 1H|protein phosphatase 1H (PP2C domain containing)|ras homolog gene family, member C like 1 20121230 -9606 57461 ISY1 - FSAP33 HGNC:29201|MIM:612764|Ensembl:ENSG00000240682|HPRD:13834|Vega:OTTHUMG00000137365 3 3q21.3 ISY1 splicing factor homolog (S. cerevisiae) protein-coding ISY1 ISY1 splicing factor homolog (S. cerevisiae) O functional spliceosome-associated protein 33|pre-mRNA-splicing factor ISY1 homolog 20121230 -9606 57462 KIAA1161 RP11-573M23.6 NET37 HGNC:19918|Ensembl:ENSG00000164976|HPRD:17208|Vega:OTTHUMG00000019816 9 9p13.3 KIAA1161 protein-coding KIAA1161 KIAA1161 O uncharacterized family 31 glucosidase KIAA1161 20121230 -9606 57463 AMIGO1 - AMIGO|AMIGO-1 HGNC:20824|Ensembl:ENSG00000181754|HPRD:11129|Vega:OTTHUMG00000011653 1 1p13.3 adhesion molecule with Ig-like domain 1 protein-coding AMIGO1 adhesion molecule with Ig-like domain 1 O alivin-2|amphoterin-induced gene and ORF|amphoterin-induced protein 1 20121230 -9606 57464 STRIP2 - FAM40B|FAR11B HGNC:22209|Ensembl:ENSG00000128578|HPRD:16880|Vega:OTTHUMG00000157695 7 7q32.1 striatin interacting protein 2 protein-coding STRIP2 striatin interacting protein 2 O FAR11 factor arrest 11 homolog B|family with sequence similarity 40, member B|homolog of yeast FAR11 protein 2|protein FAM40B 20121230 -9606 57465 TBC1D24 - FIME HGNC:29203|MIM:613577|Ensembl:ENSG00000162065|Vega:OTTHUMG00000177150 16 16p13.3 TBC1 domain family, member 24 protein-coding TBC1D24 TBC1 domain family, member 24 O TBC1 domain family member 24 20121230 -9606 57466 SCAF4 - SFRS15|SRA4 HGNC:19304|Ensembl:ENSG00000156304|HPRD:11551|Vega:OTTHUMG00000084903 21 21q22.1 SR-related CTD-associated factor 4 protein-coding SCAF4 SR-related CTD-associated factor 4 O CTD-binding SR-like protein rA4|SR-like CTD-associated factor 4|SR-related and CTD-associated factor 4|pre-mRNA splicing SR protein rA4|splicing factor serine alanine 15|splicing factor, arginine/serine-rich 15 20121230 -9606 57467 HHATL - C3orf3|GUP1|MBOAT3|MSTP002|OACT3 HGNC:13242|MIM:608116|Ensembl:ENSG00000010282|HPRD:12166|Vega:OTTHUMG00000133043 3 3p22.1 hedgehog acyltransferase-like protein-coding HHATL hedgehog acyltransferase-like O GUP1 glycerol uptake/transporter homolog|glycerol uptake/transporter homolog|hedgehog acyltransferase-like protein|membrane bound O-acyltransferase domain containing 3|protein-cysteine N-palmitoyltransferase HHAT-like protein 20121230 -9606 57468 SLC12A5 RP11-465L10.5 KCC2 HGNC:13818|MIM:606726|Ensembl:ENSG00000124140|HPRD:09469|Vega:OTTHUMG00000032638 20 20q13.12 solute carrier family 12 (potassium/chloride transporter), member 5 protein-coding SLC12A5 solute carrier family 12 (potassium/chloride transporter), member 5 O K-Cl cotransporter 2|electroneutral potassium-chloride cotransporter 2|erythroid K-Cl cotransporter 2|hKCC2|neuronal K-Cl cotransporter|solute carrier family 12 member 5 20121230 -9606 57469 PNMAL2 - - HGNC:29206 19 19q13.32 paraneoplastic Ma antigen family-like 2 protein-coding PNMAL2 paraneoplastic Ma antigen family-like 2 O PNMA-like 2|PNMA-like protein 2 20121230 -9606 57470 LRRC47 RP1-286D6.3 - HGNC:29207|Ensembl:ENSG00000130764|HPRD:13837|Vega:OTTHUMG00000003506 1 1p36.32 leucine rich repeat containing 47 protein-coding LRRC47 leucine rich repeat containing 47 O leucine-rich repeat-containing protein 47 20121230 -9606 57471 ERMN - JN|KIAA1189|ermin HGNC:29208|MIM:610072|Ensembl:ENSG00000136541|HPRD:13838|Vega:OTTHUMG00000153843 2 2q24.1 ermin, ERM-like protein protein-coding ERMN ermin, ERM-like protein O ermin|juxtanodin 20121230 -9606 57472 CNOT6 - CCR4 HGNC:14099|MIM:608951|Ensembl:ENSG00000113300|HPRD:12341|Vega:OTTHUMG00000130935 5 5q35.3 CCR4-NOT transcription complex, subunit 6 protein-coding CNOT6 CCR4-NOT transcription complex, subunit 6 O CCR4-NOT transcription complex subunit 6|carbon catabolite repression 4 protein|carbon catabolite repressor protein 4 homolog|cytoplasmic deadenylase 20121230 -9606 57473 ZNF512B - GM632 HGNC:29212|Ensembl:ENSG00000196700|HPRD:13840|Vega:OTTHUMG00000033008 20 20q13.33 zinc finger protein 512B protein-coding ZNF512B zinc finger protein 512B O - 20121230 -9606 57474 ZNF490 - - HGNC:23705|Ensembl:ENSG00000188033|HPRD:15802|Vega:OTTHUMG00000156398 19 19p13.2 zinc finger protein 490 protein-coding ZNF490 zinc finger protein 490 O - 20121230 -9606 57475 PLEKHH1 - - HGNC:17733|Ensembl:ENSG00000054690|HPRD:17862|Vega:OTTHUMG00000171272 14 14q24.1 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 protein-coding PLEKHH1 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 O PH domain-containing family H member 1|pleckstrin homology domain-containing family H member 1 20121230 -9606 57476 GRAMD1B UNQ3032/PRO9834 - HGNC:29214|Ensembl:ENSG00000023171|Vega:OTTHUMG00000166004 11 11q24.1 GRAM domain containing 1B protein-coding GRAMD1B GRAM domain containing 1B O GRAM domain-containing protein 1B 20121230 -9606 57477 SHROOM4 RP11-119E20.1 SHAP HGNC:29215|MIM:300579|Ensembl:ENSG00000158352|HPRD:17209|Vega:OTTHUMG00000021521 X Xp11.22 shroom family member 4 protein-coding SHROOM4 shroom family member 4 O protein Shroom4|second homolog of apical protein 20121230 -9606 57478 USP31 - - HGNC:20060|Ensembl:ENSG00000103404|HPRD:15634|Vega:OTTHUMG00000094793 16 16p12.2 ubiquitin specific peptidase 31 protein-coding USP31 ubiquitin specific peptidase 31 O deubiquitinating enzyme 31|ubiquitin carboxyl-terminal hydrolase 31|ubiquitin specific protease 31|ubiquitin specific proteinase 31|ubiquitin thioesterase 31|ubiquitin thiolesterase 31|ubiquitin-specific-processing protease 31 20121230 -9606 57479 PRR12 - KIAA1205 HGNC:29217|Ensembl:ENSG00000126464 19 19q13.33 proline rich 12 protein-coding PRR12 proline rich 12 O proline-rich protein 12 20121230 -9606 57480 PLEKHG1 RP11-25C17.1 ARHGEF41 HGNC:20884|Ensembl:ENSG00000120278|Vega:OTTHUMG00000015824 6 6q25.1 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 protein-coding PLEKHG1 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 O pleckstrin homology domain-containing family G member 1 20121230 -9606 57481 KIAA1210 RP13-347D8.3 - HGNC:29218|Ensembl:ENSG00000250423|Vega:OTTHUMG00000162980 X Xq24 KIAA1210 protein-coding KIAA1210 KIAA1210 O uncharacterized protein KIAA1210 20121230 -9606 57482 KIAA1211 - - HGNC:29219|Ensembl:ENSG00000109265|Vega:OTTHUMG00000160749 4 4q12 KIAA1211 protein-coding KIAA1211 KIAA1211 O uncharacterized protein KIAA1211 20121230 -9606 57484 RNF150 - - HGNC:23138|Ensembl:ENSG00000170153|HPRD:15258|Vega:OTTHUMG00000161380 4 4q31.21 ring finger protein 150 protein-coding RNF150 ring finger protein 150 O RING finger protein 150 20121230 -9606 57486 NLN - AGTBP|EP24.16|MEP|MOP HGNC:16058|MIM:611530|Ensembl:ENSG00000123213|HPRD:07495|Vega:OTTHUMG00000097803 5 5q12.3 neurolysin (metallopeptidase M3 family) protein-coding NLN neurolysin (metallopeptidase M3 family) O angiotensin binding protein|angiotensin-binding protein|endopeptidase 24.16|microsomal endopeptidase|mitochondrial oligopeptidase M|neurolysin, mitochondrial|neurotensin endopeptidase 20121230 -9606 57488 ESYT2 tcag7.562 CHR2SYT|E-Syt2|FAM62B HGNC:22211|Ensembl:ENSG00000117868|HPRD:13053|Vega:OTTHUMG00000151436 7 7q36.3 extended synaptotagmin-like protein 2 protein-coding ESYT2 extended synaptotagmin-like protein 2 O chr2 synaptotagmin|extended synaptotagmin-2|family with sequence similarity 62 (C2 domain containing), member B 20121230 -9606 57489 ODF2L - RP5-977L11.1|dJ977L11.1 HGNC:29225|Ensembl:ENSG00000122417|HPRD:11134|Vega:OTTHUMG00000010080 1 1p22.3 outer dense fiber of sperm tails 2-like protein-coding ODF2L outer dense fiber of sperm tails 2-like O outer dense fiber protein 2-like 20121230 -9606 57491 AHRR hCG_2044128 AHH|AHHR|bHLHe77 HGNC:346|MIM:606517|Ensembl:ENSG00000063438|HPRD:07356|Vega:OTTHUMG00000162171 5 5p15.3 aryl-hydrocarbon receptor repressor protein-coding AHRR aryl-hydrocarbon receptor repressor O ahR repressor|aryl hydrocarbon hydroxylase regulator|aryl hydrocarbon receptor repressor|class E basic helix-loop-helix protein 77|dioxin receptor repressor 20121230 -9606 57492 ARID1B RP11-419L10.1 6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R HGNC:18040|MIM:614556|Ensembl:ENSG00000049618|HPRD:10660|Vega:OTTHUMG00000015890 6 6q25.1 AT rich interactive domain 1B (SWI1-like) protein-coding ARID1B AT rich interactive domain 1B (SWI1-like) O ARID domain-containing protein 1B|AT-rich interactive domain-containing protein 1B|BRG1-associated factor 250b|BRG1-binding protein ELD/OSA1|ELD (eyelid)/OSA protein 20121230 -9606 57493 HEG1 - HEG|MST112|MSTP112 HGNC:29227|MIM:614182|Ensembl:ENSG00000173706|Vega:OTTHUMG00000159486 3 3q21.2 HEG homolog 1 (zebrafish) protein-coding HEG1 HEG homolog 1 (zebrafish) O protein HEG homolog 1 20121230 -9606 57494 RIMKLB - FAM80B|NAAGS|NAAGS-I HGNC:29228|MIM:614054|Ensembl:ENSG00000166532|HPRD:13844|Vega:OTTHUMG00000168197 12 12p13.31 ribosomal modification protein rimK-like family member B protein-coding RIMKLB ribosomal modification protein rimK-like family member B O N-acetyl-aspartyl-glutamate synthetase B|N-acetylaspartyl-glutamate synthetase B|NAAG synthetase B|beta-citryl-glutamate synthase B|beta-citrylglutamate synthase B|family with sequence similarity 80, member B|ribosomal protein S6 modification-like protein B 20121230 -9606 57495 KIAA1239 - - HGNC:29229|Ensembl:ENSG00000174145|Vega:OTTHUMG00000157134 4 4p14 KIAA1239 protein-coding KIAA1239 KIAA1239 O leucine-rich repeat and WD repeat-containing protein KIAA1239 20121230 -9606 57496 MKL2 - MRTF-B|NPD001 HGNC:29819|MIM:609463|Ensembl:ENSG00000186260|HPRD:17577|Vega:OTTHUMG00000177379 16 16p13.12 MKL/myocardin-like 2 protein-coding MKL2 MKL/myocardin-like 2 O MKL/myocardin-like protein 2|megakaryoblastic leukemia 2|myocardin-related transcription factor B 20121230 -9606 57497 LRFN2 - FIGLER2|KIAA1246|RP11-535K1.2|SALM1 HGNC:21226|MIM:612808|Ensembl:ENSG00000156564|HPRD:17444|Vega:OTTHUMG00000014662 6 6p21.2-p21.1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding LRFN2 leucine rich repeat and fibronectin type III domain containing 2 O fibronectin type III, immunoglobulin and leucine rich repeat domains 2|leucine-rich repeat and fibronectin type-III domain-containing protein 2|synaptic adhesion-like molecule 1 20121230 -9606 57498 KIDINS220 - ARMS HGNC:29508|Ensembl:ENSG00000134313|HPRD:17235|Vega:OTTHUMG00000151658 2 2p24 kinase D-interacting substrate, 220kDa protein-coding KIDINS220 kinase D-interacting substrate, 220kDa O ankyrin repeat-rich membrane spanning|ankyrin repeat-rich membrane-spanning protein|kinase D-interacting substrate of 220 kDa 20121230 -9606 57501 KIAA1257 - - HGNC:29231|Ensembl:ENSG00000114656|Vega:OTTHUMG00000159946 3 3q21.3 KIAA1257 protein-coding KIAA1257 KIAA1257 O uncharacterized protein KIAA1257 20121230 -9606 57502 NLGN4X UNQ365/PRO701 ASPGX2|AUTSX2|HLNX|HNL4X|HNLX|NLGN|NLGN4 HGNC:14287|MIM:300427|Ensembl:ENSG00000146938|HPRD:02336|Vega:OTTHUMG00000021093 X Xp22.33 neuroligin 4, X-linked protein-coding NLGN4X neuroligin 4, X-linked O neuroligin X|neuroligin-4, X-linked 20121230 -9606 57504 MTA3 hCG_1783907 - HGNC:23784|MIM:609050|Ensembl:ENSG00000057935|HPRD:12359|Vega:OTTHUMG00000150452 2 2p21 metastasis associated 1 family, member 3 protein-coding MTA3 metastasis associated 1 family, member 3 O metastasis associated family, member 3|metastasis associated gene family, member 3|metastasis-associated protein MTA3 20121230 -9606 57505 AARS2 RP11-444E17.1 AARSL|COXPD8|MT-ALARS|MTALARS HGNC:21022|MIM:612035|Ensembl:ENSG00000124608|HPRD:12397|Vega:OTTHUMG00000014766 6 6p21.1 alanyl-tRNA synthetase 2, mitochondrial protein-coding AARS2 alanyl-tRNA synthetase 2, mitochondrial O alanine tRNA ligase 2, mitochondrial (putative)|alanine--tRNA ligase, mitochondrial|alanyl-tRNA synthetase 2, mitochondrial (putative)|alanyl-tRNA synthetase like|probable alanyl-tRNA synthetase, mitochondrial 20121230 -9606 57506 MAVS - CARDIF|IPS-1|IPS1|VISA HGNC:29233|MIM:609676|Ensembl:ENSG00000088888|HPRD:13847|Vega:OTTHUMG00000031765 20 20p13 mitochondrial antiviral signaling protein protein-coding MAVS mitochondrial antiviral signaling protein O CARD adapter inducing interferon beta|CARD adaptor inducing IFN-beta|IFN-B promoter stimulator 1|interferon beta promoter stimulator protein 1|mitochondrial antiviral-signaling protein|putative NF-kappa-B-activating protein 031N|virus-induced signaling adaptor|virus-induced-signaling adapter 20121230 -9606 57507 ZNF608 - NY-REN-36 HGNC:29238|Ensembl:ENSG00000168916|HPRD:18357|Vega:OTTHUMG00000162999 5 5q23.2 zinc finger protein 608 protein-coding ZNF608 zinc finger protein 608 O renal carcinoma antigen NY-REN-36 20121230 -9606 57508 INTS2 - INT2|KIAA1287 HGNC:29241|MIM:611346|Ensembl:ENSG00000108506|HPRD:11137|Vega:OTTHUMG00000179234 17 17q23.2 integrator complex subunit 2 protein-coding INTS2 integrator complex subunit 2 O - 20121230 -9606 57509 MTUS1 - ATBP|ATIP|MP44|MTSG1 HGNC:29789|MIM:609589|Ensembl:ENSG00000129422|HPRD:11376|Vega:OTTHUMG00000163756 8 8p22 microtubule associated tumor suppressor 1 protein-coding MTUS1 microtubule associated tumor suppressor 1 O AT2 receptor-binding protein|AT2 receptor-interacting protein|AT2R binding protein|angiotensin-II type 2 receptor-interacting protein|erythroid differentiation-related|microtubule-associated tumor suppressor 1|mitochondrial tumor suppressor gene 1|transcription factor MTSG1 20121230 -9606 57510 XPO5 RP3-337H4.5 exp5 HGNC:17675|MIM:607845|Ensembl:ENSG00000124571|HPRD:06385|Vega:OTTHUMG00000014742 6 6p21.1 exportin 5 protein-coding XPO5 exportin 5 O exportin-5|ran-binding protein 21 20121230 -9606 57511 COG6 RP11-304M3.3 CDG2L|COD2 HGNC:18621|MIM:606977|Ensembl:ENSG00000133103|HPRD:08445|Vega:OTTHUMG00000016768 13 13q14.11 component of oligomeric golgi complex 6 protein-coding COG6 component of oligomeric golgi complex 6 O COG complex subunit 6|complexed with Dor1p 2|conserved oligomeric Golgi complex protein 6|conserved oligomeric Golgi complex subunit 6 20121230 -9606 57512 GPR158 - RP11-59G22.1 HGNC:23689|MIM:614573|Ensembl:ENSG00000151025|HPRD:13601|Vega:OTTHUMG00000017832 10 10p12.1 G protein-coupled receptor 158 protein-coding GPR158 G protein-coupled receptor 158 O probable G-protein coupled receptor 158 20121230 -9606 57513 CASKIN2 - ANKS5B HGNC:18200|MIM:612185|Ensembl:ENSG00000177303|HPRD:09872|Vega:OTTHUMG00000179683 17 17q25.1 CASK interacting protein 2 protein-coding CASKIN2 CASK interacting protein 2 O CASK-interacting protein 2|caskin-2 20121230 -9606 57514 ARHGAP31 - AOS1|CDGAP HGNC:29216|MIM:610911|Ensembl:ENSG00000031081|HPRD:16697|Vega:OTTHUMG00000159362 3 3q13.33 Rho GTPase activating protein 31 protein-coding ARHGAP31 Rho GTPase activating protein 31 O Cdc42 GTPase-activating protein|rho GTPase-activating protein 31 20121230 -9606 57515 SERINC1 UNQ396/PRO732 TDE1L|TDE2|TMS-2|TMS2 HGNC:13464|MIM:614548|Ensembl:ENSG00000111897|HPRD:15480|Vega:OTTHUMG00000015487 6 6q22.31 serine incorporator 1 protein-coding SERINC1 serine incorporator 1 O tumor differentially expressed 2|tumor differentially expressed protein 2 20121230 -9606 57519 STARD9 - - HGNC:19162|MIM:614642|Ensembl:ENSG00000159433|Vega:OTTHUMG00000175799 15 15q15.2 StAR-related lipid transfer (START) domain containing 9 protein-coding STARD9 StAR-related lipid transfer (START) domain containing 9 O START domain containing 9|START domain-containing protein 9|stAR-related lipid transfer protein 9 20121230 -9606 57520 HECW2 - NEDL2 HGNC:29853|Ensembl:ENSG00000138411|HPRD:17099|Vega:OTTHUMG00000154435 2 2q32.3 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding HECW2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 O E3 ubiquitin-protein ligase HECW2|HECT, C2 and WW domain-containing protein 2|NEDD4-like E3 ubiquitin-protein ligase 2|NEDD4-related E3 ubiquitin ligase NEDL2 20121230 -9606 57521 RPTOR - KOG1|Mip1 HGNC:30287|MIM:607130|Ensembl:ENSG00000141564|HPRD:06184|Vega:OTTHUMG00000177622 17 17q25.3 regulatory associated protein of MTOR, complex 1 protein-coding RPTOR regulatory associated protein of MTOR, complex 1 O p150 target of rapamycin (TOR)-scaffold protein containing WD-repeats|raptor|regulatory-associated protein of mTOR 20121230 -9606 57522 SRGAP1 - ARHGAP13 HGNC:17382|MIM:606523|Ensembl:ENSG00000196935|HPRD:09406|Vega:OTTHUMG00000168750 12 12q14.2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 O SLIT-ROBO Rho GTPase-activating protein 1|rho GTPase-activating protein 13 20121230 -9606 57523 NYNRIN - CGIN1|KIAA1305 HGNC:20165|Ensembl:ENSG00000205978|Vega:OTTHUMG00000171314 14 14q12 NYN domain and retroviral integrase containing protein-coding NYNRIN NYN domain and retroviral integrase containing O Cousin of GIN1|NYN domain and retroviral integrase catalytic domain-containing protein|protein NYNRIN|protein cousin of GIN1 20121230 -9606 57524 CASKIN1 - ANKS5A HGNC:20879|MIM:612184|Ensembl:ENSG00000167971|HPRD:10809|Vega:OTTHUMG00000177045 16 16p13.3 CASK interacting protein 1 protein-coding CASKIN1 CASK interacting protein 1 O CASK-interacting protein 1|caskin-1 20121230 -9606 57526 PCDH19 RP11-99E24.1 EFMR|EIEE9 HGNC:14270|MIM:300460|Ensembl:ENSG00000165194|HPRD:11843|Vega:OTTHUMG00000022000 X Xq22.1 protocadherin 19 protein-coding PCDH19 protocadherin 19 O protocadherin-19 20121230 -9606 57528 KCTD16 - - HGNC:29244|MIM:613423|Ensembl:ENSG00000183775|HPRD:17175|Vega:OTTHUMG00000163172 5 5q31.3 potassium channel tetramerisation domain containing 16 protein-coding KCTD16 potassium channel tetramerisation domain containing 16 O BTB/POZ domain-containing protein KCTD16|potassium channel tetramerization domain-containing protein 16 20121230 -9606 57529 RGAG1 - MAR9|MART9 HGNC:29245|Ensembl:ENSG00000243978|HPRD:06600|Vega:OTTHUMG00000022196 X Xq23 retrotransposon gag domain containing 1 protein-coding RGAG1 retrotransposon gag domain containing 1 O retrotransposon gag domain-containing protein 1|tumor antigen BJ-HCC-23|tumor antigen BJHCC23 20121230 -9606 57530 CGN RP11-74C1.3 - HGNC:17429|MIM:609473|Ensembl:ENSG00000143375|HPRD:10827|Vega:OTTHUMG00000012497 1 1q21 cingulin protein-coding CGN cingulin O - 20121230 -9606 57531 HACE1 - - HGNC:21033|MIM:610876|Ensembl:ENSG00000085382|HPRD:17086|Vega:OTTHUMG00000015287 6 6q16.3 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 O E3 ubiquitin-protein ligase HACE1|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1|HECT domain and ankyrin repeat-containing E3 ubiquitin-protein ligase 1 20121230 -9606 57532 NUFIP2 PIG1 182-FIP|82-FIP|FIP-82 HGNC:17634|MIM:609356|Ensembl:ENSG00000108256|HPRD:11764|Vega:OTTHUMG00000179547 17 17q11.2 nuclear fragile X mental retardation protein interacting protein 2 protein-coding NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 O 82 kDa FMRP-interacting protein|82-kD FMRP Interacting Protein|FMRP-interacting protein 2|Fragile X Mental Retardation Protein|cell proliferation-inducing gene 1 protein|nuclear fragile X mental retardation-interacting protein 2|proliferation-inducing gene 1 20121230 -9606 57533 TBC1D14 - - HGNC:29246|MIM:614855|Ensembl:ENSG00000132405|HPRD:11623|Vega:OTTHUMG00000090493 4 4p16.1 TBC1 domain family, member 14 protein-coding TBC1D14 TBC1 domain family, member 14 O TBC1 domain family member 14 20121230 -9606 57534 MIB1 - DIP-1|DIP1|MIB|ZZANK2|ZZZ6 HGNC:21086|MIM:608677|Ensembl:ENSG00000101752|HPRD:06660|Vega:OTTHUMG00000131753 18 18q11.2 mindbomb E3 ubiquitin protein ligase 1 protein-coding MIB1 mindbomb E3 ubiquitin protein ligase 1 O DAPK-interacting protein 1|E3 ubiquitin-protein ligase MIB1|mind bomb homolog 1|mindbomb homolog 1|ubiquitin ligase mind bomb|ubiquitin ligase protein MIB1|zinc finger ZZ type with ankyrin repeat domain protein 2 20121230 -9606 57535 KIAA1324 RP11-352P4.1 EIG121 HGNC:29618|MIM:611298|Ensembl:ENSG00000116299|HPRD:13850|Vega:OTTHUMG00000011725 1 1p13.3 KIAA1324 protein-coding KIAA1324 KIAA1324 O UPF0577 protein KIAA1324|estrogen induced gene 121|estrogen-induced gene 121 protein|maba1 20121230 -9606 57536 KIAA1328 - - HGNC:29248|Ensembl:ENSG00000150477|HPRD:17211|Vega:OTTHUMG00000178087 18 18q12.2 KIAA1328 protein-coding KIAA1328 KIAA1328 O hinderin|uncharacterized protein KIAA1328 20121230 -9606 57537 SORCS2 - - HGNC:16698|MIM:606284|Ensembl:ENSG00000184985|HPRD:12099|Vega:OTTHUMG00000159981 4 4p16.1 sortilin-related VPS10 domain containing receptor 2 protein-coding SORCS2 sortilin-related VPS10 domain containing receptor 2 O VPS10 domain receptor protein|VPS10 domain-containing receptor SorCS2 20121230 -9606 57538 ALPK3 - MAK|MIDORI HGNC:17574|Ensembl:ENSG00000136383|HPRD:11365|Vega:OTTHUMG00000148667 15 15q25.2 alpha-kinase 3 protein-coding ALPK3 alpha-kinase 3 O alpha-protein kinase 3|muscle alpha-kinase|muscle alpha-protein kinase|myocyte induction differentiation originator 20121230 -9606 57539 WDR35 - CED2 HGNC:29250|MIM:613602|Ensembl:ENSG00000118965|HPRD:15667|Vega:OTTHUMG00000090737 2 2p24.1 WD repeat domain 35 protein-coding WDR35 WD repeat domain 35 O WD repeat-containing protein 35|intraflagellar transport protein 121 homolog|naofen 20121230 -9606 57540 PTCHD2 hCG_24779 DISP3 HGNC:29251|MIM:611251|Ensembl:ENSG00000204624|Vega:OTTHUMG00000002074 1 1p36.22 patched domain containing 2 protein-coding PTCHD2 patched domain containing 2 O dispatched 3|patched domain-containing protein 2|protein dispatched homolog 3 20121230 -9606 57541 ZNF398 - P51|P71|ZER6 HGNC:18373|Ensembl:ENSG00000197024|HPRD:18336|Vega:OTTHUMG00000158970 7 7q36.1 zinc finger protein 398 protein-coding ZNF398 zinc finger protein 398 O zinc finger DNA binding protein ZER6|zinc finger DNA binding protein p52/p71|zinc finger DNA-binding protein p52/p71|zinc finger-estrogen receptor interaction, clone 6 20121230 -9606 57542 KLHDC5 - Ctb9 HGNC:29252|Ensembl:ENSG00000087448|HPRD:17237|Vega:OTTHUMG00000169217 12 12p11.22 kelch domain containing 5 protein-coding KLHDC5 kelch domain containing 5 O kelch domain-containing protein 5 20121230 -9606 57544 TXNDC16 - ERp90|KIAA1344 HGNC:19965|Ensembl:ENSG00000087301|HPRD:11140|Vega:OTTHUMG00000171103 14 14q22.1 thioredoxin domain containing 16 protein-coding TXNDC16 thioredoxin domain containing 16 O thioredoxin domain-containing protein 16 20121230 -9606 57545 CC2D2A - JBTS9|MKS6 HGNC:29253|MIM:612013|Ensembl:ENSG00000048342|Vega:OTTHUMG00000160255 4 4p15.32 coiled-coil and C2 domain containing 2A protein-coding CC2D2A coiled-coil and C2 domain containing 2A O coiled-coil and C2 domain-containing protein 2A 20121230 -9606 57546 PDP2 - PPM2C2 HGNC:30263|Ensembl:ENSG00000172840|HPRD:15112|Vega:OTTHUMG00000137512 16 16q22.1 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 O PDPC 2|[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial|protein phosphatase 2C, magnesium-dependent, catalytic subunit 2|pyruvate dehydrogenase phosphatase catalytic subunit 2|pyruvate dehydrogenase phosphatase isoenzyme 2|pyruvate dehydrogenase phosphatase, catalytic subunit 2 20121230 -9606 57547 ZNF624 - - HGNC:29254|Ensembl:ENSG00000197566|HPRD:18359|Vega:OTTHUMG00000058996 17 17p11.2 zinc finger protein 624 protein-coding ZNF624 zinc finger protein 624 O - 20121230 -9606 57549 IGSF9 RP11-48O20.2 FP18798|IGSF9A|Nrt1 HGNC:18132|MIM:609738|Ensembl:ENSG00000085552|HPRD:10001|Vega:OTTHUMG00000022794 1 1q22-q23 immunoglobulin superfamily, member 9 protein-coding IGSF9 immunoglobulin superfamily, member 9 O immunoglobulin superfamily member 9A|protein turtle homolog A 20121230 -9606 57551 TAOK1 - KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 HGNC:29259|MIM:610266|Ensembl:ENSG00000160551|HPRD:15467|Vega:OTTHUMG00000179718 17 17q11.2 TAO kinase 1 protein-coding TAOK1 TAO kinase 1 O MARK Kinase|STE20-like kinase PSK2|kinase from chicken homolog B|microtubule affinity regulating kinase kinase|prostate-derived STE20-like kinase 2|prostate-derived sterile 20-like kinase 2|serine/threonine protein kinase TAO1 homolog|serine/threonine-protein kinase TAO1|thousand and one amino acid protein 1|thousand and one amino acid protein kinase 1 20121230 -9606 57552 NCEH1 - AADACL1|NCEH HGNC:29260|MIM:613234|Ensembl:ENSG00000144959|HPRD:07489|Vega:OTTHUMG00000156872 3 3q26.31 neutral cholesterol ester hydrolase 1 protein-coding NCEH1 neutral cholesterol ester hydrolase 1 O arylacetamide deacetylase-like 1 20121230 -9606 57553 MICAL3 hCG_21531 MICAL-3 HGNC:24694|MIM:608882|Ensembl:ENSG00000243156|Vega:OTTHUMG00000150067 22 22q11.21 microtubule associated monoxygenase, calponin and LIM domain containing 3 protein-coding MICAL3 microtubule associated monoxygenase, calponin and LIM domain containing 3 O flavoprotein oxidoreductase MICAL3|molecule interacting with CasL protein 3|protein MICAL-3|protein-methionine sulfoxide oxidase MICAL3 20121230 -9606 57554 LRRC7 - DENSIN HGNC:18531|MIM:614453|Ensembl:ENSG00000033122|HPRD:09930|Vega:OTTHUMG00000059194 1 1p31.1 leucine rich repeat containing 7 protein-coding LRRC7 leucine rich repeat containing 7 O densin-180|leucine-rich repeat-containing protein 7 20121230 -9606 57555 NLGN2 - - HGNC:14290|MIM:606479|Ensembl:ENSG00000169992|HPRD:07348|Vega:OTTHUMG00000108138 17 17p13.1 neuroligin 2 protein-coding NLGN2 neuroligin 2 O neuroligin-2 20121230 -9606 57556 SEMA6A - HT018|SEMA|SEMA6A1|SEMAQ|VIA HGNC:10738|MIM:605885|Ensembl:ENSG00000092421|HPRD:06906|Vega:OTTHUMG00000162987 5 5q23.1 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A protein-coding SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A O SEMA6A-1|sema VIa|semaphorin 6A-1|semaphorin VIA|semaphorin-6A|semaphorin-6A-1 20121230 -9606 57558 USP35 - - HGNC:20061|Ensembl:ENSG00000118369|Vega:OTTHUMG00000166492 11 11q14.1 ubiquitin specific peptidase 35 protein-coding USP35 ubiquitin specific peptidase 35 O deubiquitinating enzyme 35|ubiquitin carboxyl-terminal hydrolase 35|ubiquitin specific protease 35|ubiquitin thioesterase 35|ubiquitin thiolesterase 35|ubiquitin-specific-processing protease 35 20121230 -9606 57559 STAMBPL1 - ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 HGNC:24105|MIM:612352|Ensembl:ENSG00000138134|HPRD:16486|Vega:OTTHUMG00000018702 10 10q23.31 STAM binding protein-like 1 protein-coding STAMBPL1 STAM binding protein-like 1 O AMSH-like protease|associated molecule with the SH3 domain of STAM (AMSH) - Family Protein|associated molecule with the SH3 domain of STAM (AMSH) like protein 20121230 -9606 57560 IFT80 - ATD2|WDR56 HGNC:29262|MIM:611177|Ensembl:ENSG00000068885|Ensembl:ENSG00000248710|HPRD:13853|Vega:OTTHUMG00000158953|Vega:OTTHUMG00000162252 3 3q25.33 intraflagellar transport 80 homolog (Chlamydomonas) protein-coding IFT80 intraflagellar transport 80 homolog (Chlamydomonas) O WD repeat domain 56|WD repeat-containing protein 56|intraflagellar transport protein 80 homolog 20121230 -9606 57561 ARRDC3 - TLIMP HGNC:29263|MIM:612464|Ensembl:ENSG00000113369|HPRD:09810|Vega:OTTHUMG00000162616 5 5q14.3 arrestin domain containing 3 protein-coding ARRDC3 arrestin domain containing 3 O TBP-2-like inducible membrane protein|arrestin domain-containing protein 3|thioredoxin-binding protein-2-like inducible membrane 20121230 -9606 57562 KIAA1377 - - HGNC:29264|MIM:614634|Ensembl:ENSG00000110318|HPRD:17212|Vega:OTTHUMG00000167319 11 11q22.1 KIAA1377 protein-coding KIAA1377 KIAA1377 O uncharacterized protein KIAA1377 20121230 -9606 57563 KLHL8 - - HGNC:18644|MIM:611967|Ensembl:ENSG00000145332|HPRD:13928|Vega:OTTHUMG00000130593 4 4q22.1 kelch-like 8 (Drosophila) protein-coding KLHL8 kelch-like 8 (Drosophila) O kelch-like protein 8 20121230 -9606 57565 KLHL14 - - HGNC:29266|MIM:613772|Ensembl:ENSG00000197705|HPRD:17238|Vega:OTTHUMG00000179819 18 18q12.1 kelch-like 14 (Drosophila) protein-coding KLHL14 kelch-like 14 (Drosophila) O kelch-like protein 14|printor|protein interactor of Torsin-1A|protein interactor of torsinA 20121230 -9606 57567 ZNF319 - ZFP319 HGNC:13644|Ensembl:ENSG00000166188|HPRD:18326|Vega:OTTHUMG00000175512 16 16q21 zinc finger protein 319 protein-coding ZNF319 zinc finger protein 319 O - 20121230 -9606 57568 SIPA1L2 - SPAL2 HGNC:23800|MIM:611609|Ensembl:ENSG00000116991|HPRD:15346|Vega:OTTHUMG00000037820 1 1q42.2 signal-induced proliferation-associated 1 like 2 protein-coding SIPA1L2 signal-induced proliferation-associated 1 like 2 O SIPA1-like protein 2|SPA-1-like 2|signal-induced proliferation-associated 1-like protein 2 20121230 -9606 57569 ARHGAP20 - RARHOGAP HGNC:18357|MIM:609568|Ensembl:ENSG00000137727|HPRD:10657|Vega:OTTHUMG00000166590 11 11q23.1 Rho GTPase activating protein 20 protein-coding ARHGAP20 Rho GTPase activating protein 20 O RA and RhoGAP domain containing protein|rho GTPase activating protein 20 variant 2|rho GTPase-activating protein 20|rho-type GTPase-activating protein 20 20121230 -9606 57570 TRMT5 - KIAA1393|TRM5 HGNC:23141|MIM:611023|Ensembl:ENSG00000126814|HPRD:17213|Vega:OTTHUMG00000171294 14 14q23.1 tRNA methyltransferase 5 homolog (S. cerevisiae) protein-coding TRMT5 tRNA methyltransferase 5 homolog (S. cerevisiae) O M1G-methyltransferase|TRM5 tRNA methyltransferase 5 homolog|tRNA (guanine(37)-N1)-methyltransferase|tRNA (guanine-N(1)-)-methyltransferase|tRNA [GM37] methyltransferase|tRNA-N1G37 methyltransferase 20121230 -9606 57571 CARNS1 - ATPGD1 HGNC:29268|MIM:613368|Ensembl:ENSG00000172508|Vega:OTTHUMG00000167672 11 11q13.2 carnosine synthase 1 protein-coding CARNS1 carnosine synthase 1 O ATP-grasp domain containing 1|ATP-grasp domain-containing protein 1 20121230 -9606 57572 DOCK6 - AOS2|ZIR1 HGNC:19189|MIM:614194|Ensembl:ENSG00000130158|HPRD:13243|Vega:OTTHUMG00000180826 19 19p13.2 dedicator of cytokinesis 6 protein-coding DOCK6 dedicator of cytokinesis 6 O dedicator of cytokinesis protein 6 20121230 -9606 57573 ZNF471 - ERP1|Z1971 HGNC:23226|Ensembl:ENSG00000196263|HPRD:15797|Vega:OTTHUMG00000181943 19 19q13.43 zinc finger protein 471 protein-coding ZNF471 zinc finger protein 471 O EZFIT-related protein 1 20121230 -9606 57574 MARCH4 - MARCH-IV|RNF174 HGNC:29269|MIM:608208|Ensembl:ENSG00000144583|HPRD:16299|Vega:OTTHUMG00000154824 2 2q35 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase protein-coding MARCH4 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MARCH4|RING finger protein 174|membrane-associated RING finger protein 4|membrane-associated RING-CH protein IV 20121230 -9606 57575 PCDH10 - OL-PCDH|PCDH19 HGNC:13404|MIM:608286|Ensembl:ENSG00000138650|HPRD:12204|Vega:OTTHUMG00000161301 4 4q28.3 protocadherin 10 protein-coding PCDH10 protocadherin 10 O ortholog of OL-pcdh|protocadherin-10 20121230 -9606 57576 KIF17 RP11-401M16.8 KIF17B|KIF3X|KLP-2|OSM-3 HGNC:19167|MIM:605037|Ensembl:ENSG00000117245|HPRD:10388|Vega:OTTHUMG00000002863 1 1p36.12 kinesin family member 17 protein-coding KIF17 kinesin family member 17 O KIF17 variant protein|KIF3-related motor protein|kinesin-like protein KIF17 20121230 -9606 57577 KIAA1407 - - HGNC:29272|Ensembl:ENSG00000163617|HPRD:13856|Vega:OTTHUMG00000159337 3 3q13.31 KIAA1407 protein-coding KIAA1407 KIAA1407 O coiled-coil domain-containing protein KIAA1407 20121230 -9606 57578 UNC79 - KIAA1409 HGNC:19966|Ensembl:ENSG00000133958|HPRD:11143|Vega:OTTHUMG00000029783 14 14q32.12 unc-79 homolog (C. elegans) protein-coding UNC79 unc-79 homolog (C. elegans) O protein unc-79 homolog 20121230 -9606 57579 FAM135A RP1-198I9.1 KIAA1411 HGNC:21084|Ensembl:ENSG00000082269|HPRD:11144|Vega:OTTHUMG00000014991 6 6q13 family with sequence similarity 135, member A protein-coding FAM135A family with sequence similarity 135, member A O protein FAM135A 20121230 -9606 57580 PREX1 - P-REX1 HGNC:32594|MIM:606905|Ensembl:ENSG00000124126|HPRD:06066|Vega:OTTHUMG00000032685 20 20q13.13 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding PREX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 O phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein|ptdIns(3,4,5)-dependent Rac exchanger 1 20121230 -9606 57582 KCNT1 RP11-100C15.1 EIEE14|KCa4.1|SLACK|bA100C15.2 HGNC:18865|MIM:608167|Ensembl:ENSG00000107147|Vega:OTTHUMG00000020917 9 9q34.3 potassium channel, subfamily T, member 1 protein-coding KCNT1 potassium channel, subfamily T, member 1 O potassium channel subfamily T member 1 20121230 -9606 57583 TMEM181 - GPR178|KIAA1423 HGNC:20958|MIM:613209|Ensembl:ENSG00000146433|Vega:OTTHUMG00000015913 6 6q25.3 transmembrane protein 181 protein-coding TMEM181 transmembrane protein 181 O G protein-coupled receptor 178 20121230 -9606 57584 ARHGAP21 RP11-324E23.2 ARHGAP10 HGNC:23725|MIM:609870|Ensembl:ENSG00000107863|HPRD:06445|Vega:OTTHUMG00000017825 10 10p12.1|10p12.3 Rho GTPase activating protein 21 protein-coding ARHGAP21 Rho GTPase activating protein 21 O Rho-GTPase activating protein 10|rho GTPase-activating protein 10|rho GTPase-activating protein 21|rho-type GTPase-activating protein 21 20121230 -9606 57585 CRAMP1L LA16c-431H6.2 HN1L|TCE4 HGNC:14122|Ensembl:ENSG00000007545|HPRD:13092|Vega:OTTHUMG00000074087 16 16p13.3 Crm, cramped-like (Drosophila) protein-coding CRAMP1L Crm, cramped-like (Drosophila) O T-complex expressed gene 4|hematological and neurological expressed 1-like protein|protein cramped-like 20121230 -9606 57586 SYT13 - - HGNC:14962|MIM:607716|Ensembl:ENSG00000019505|HPRD:12128|Vega:OTTHUMG00000166504 11 11p12-p11 synaptotagmin XIII protein-coding SYT13 synaptotagmin XIII O synaptotagmin-13|sytXIII 20121230 -9606 57587 KIAA1430 - - HGNC:29276|Ensembl:ENSG00000164323|Vega:OTTHUMG00000160468 4 4q35.1 KIAA1430 protein-coding KIAA1430 KIAA1430 O UPF0501 protein KIAA1430 20121230 -9606 57589 KIAA1432 - CIP150|bA207C16.1 HGNC:17686|MIM:610354|Ensembl:ENSG00000107036|HPRD:13858|Vega:OTTHUMG00000019505 9 9p24.1 KIAA1432 protein-coding KIAA1432 KIAA1432 O connexin 43-interacting protein 150 kDa|connexin-43-interacting protein of 150 kDa|protein RIC1 homolog 20121230 -9606 57590 WDFY1 - FENS-1|WDF1|ZFYVE17 HGNC:20451|Ensembl:ENSG00000085449|HPRD:15663|Vega:OTTHUMG00000153370 2 2q36.1 WD repeat and FYVE domain containing 1 protein-coding WDFY1 WD repeat and FYVE domain containing 1 O WD repeat and FYVE domain-containing protein 1|WD40 and FYVE domain containing 1|WD40- and FYVE domain-containing protein 1|phosphoinositide-binding protein 1|phosphoinositide-binding protein SR1|zinc finger FYVE domain-containing protein 17 20121230 -9606 57591 MKL1 RP5-1042K10.11-009 BSAC|MAL|MRTF-A HGNC:14334|MIM:606078|Ensembl:ENSG00000196588|HPRD:10445|Vega:OTTHUMG00000151146 22 22q13 megakaryoblastic leukemia (translocation) 1 protein-coding MKL1 megakaryoblastic leukemia (translocation) 1 O MKL/myocardin-like protein 1|RNA-binding motif protein 15/megakaryoblastic leukemia-1 fusion protein|basic, SAP and coiled-coil domain|megakaryoblastic leukemia 1 protein|megakaryocytic acute leukemia protein|myocardin-related transcription factor A 20121230 -9606 57592 ZNF687 RP11-126K1.3 - HGNC:29277|MIM:610568|Ensembl:ENSG00000143373|HPRD:13859|Vega:OTTHUMG00000012347 1 1q21.3 zinc finger protein 687 protein-coding ZNF687 zinc finger protein 687 O - 20121230 -9606 57593 EBF4 RP5-860F19.3 COE4|O/E-4 HGNC:29278|MIM:609935|Ensembl:ENSG00000088881|Vega:OTTHUMG00000031709 20 20p13 early B-cell factor 4 protein-coding EBF4 early B-cell factor 4 O EBF-4|OE-4|olf-1/EBF-like 4|transcription factor COE4 20121230 -9606 57594 HOMEZ - KIAA1443 HGNC:20164|MIM:608119|Ensembl:ENSG00000215271|HPRD:12167|Vega:OTTHUMG00000172122 14 14q11.2 homeobox and leucine zipper encoding protein-coding HOMEZ homeobox and leucine zipper encoding O homeobox and leucine zipper protein Homez|homeodomain leucine zipper-containing factor 20121230 -9606 57595 PDZD4 - LU1|PDZK4|PDZRN4L HGNC:21167|MIM:300634|Ensembl:ENSG00000067840|HPRD:06601|Vega:OTTHUMG00000024209 X Xq28 PDZ domain containing 4 protein-coding PDZD4 PDZ domain containing 4 O PDZ domain-containing RING finger protein 4-like protein|PDZ domain-containing protein 4 20121230 -9606 57596 BEGAIN - - HGNC:24163|Ensembl:ENSG00000183092|HPRD:06459|Vega:OTTHUMG00000171589 14 14q32.2 brain-enriched guanylate kinase-associated protein-coding BEGAIN brain-enriched guanylate kinase-associated O brain-enriched guanylate kinase-associated homolog|brain-enriched guanylate kinase-associated protein 20121230 -9606 57597 BAHCC1 - BAHD2 HGNC:29279|Ensembl:ENSG00000171282|Vega:OTTHUMG00000177953 17 17q25.3 BAH domain and coiled-coil containing 1 protein-coding BAHCC1 BAH domain and coiled-coil containing 1 O BAH and coiled-coil domain-containing protein 1|BAH domain-containing protein 2|bromo adjacent homology domain-containing protein 2 20121230 -9606 57599 WDR48 - P80|UAF1 HGNC:30914|MIM:612167|Ensembl:ENSG00000114742|HPRD:11146|Vega:OTTHUMG00000155972 3 3p21.33 WD repeat domain 48 protein-coding WDR48 WD repeat domain 48 O USP1 associated factor 1|USP1-associated factor 1|WD repeat endosomal protein|WD repeat-containing protein 48 20121230 -9606 57600 FNIP2 - FNIPL|MAPO1 HGNC:29280|MIM:612768|Ensembl:ENSG00000052795|Vega:OTTHUMG00000161983 4 4q32.1 folliculin interacting protein 2 protein-coding FNIP2 folliculin interacting protein 2 O FNIP1-like protein|O6-methylguanine-induced apoptosis 1 protein|folliculin-interacting protein 2 20121230 -9606 57602 USP36 - DUB1 HGNC:20062|MIM:612543|Ensembl:ENSG00000055483|HPRD:07164|Vega:OTTHUMG00000177542 17 17q25.3 ubiquitin specific peptidase 36 protein-coding USP36 ubiquitin specific peptidase 36 O deubiquitinating enzyme 1|deubiquitinating enzyme 36|ubiquitin carboxyl-terminal hydrolase 36|ubiquitin specific protease 36|ubiquitin thioesterase 36|ubiquitin thiolesterase 36|ubiquitin-specific-processing protease 36 20121230 -9606 57604 KIAA1456 - C8orf79 HGNC:26725|Ensembl:ENSG00000250305|HPRD:13862|Vega:OTTHUMG00000165477 8 8p22 KIAA1456 protein-coding KIAA1456 KIAA1456 O putative methyltransferase KIAA1456 20121230 -9606 57605 PITPNM2 - NIR-3|NIR3|RDGB2|RDGBA2 HGNC:21044|MIM:608920|Ensembl:ENSG00000090975|HPRD:08335|Vega:OTTHUMG00000168845 12 12q24.31 phosphatidylinositol transfer protein, membrane-associated 2 protein-coding PITPNM2 phosphatidylinositol transfer protein, membrane-associated 2 O PITPnm 2|PYK2 N-terminal domain-interacting receptor 3|membrane-associated phosphatidylinositol transfer protein 2|retinal degeneration B alpha 2 20121230 -9606 57606 SLAIN2 - KIAA1458 HGNC:29282|MIM:610492|Ensembl:ENSG00000109171|Vega:OTTHUMG00000161701 4 4p11 SLAIN motif family, member 2 protein-coding SLAIN2 SLAIN motif family, member 2 O SLAIN motif-containing protein 2 20121230 -9606 57608 KIAA1462 - JCAD HGNC:29283|MIM:614398|Ensembl:ENSG00000165757|Vega:OTTHUMG00000017885 10 10p11.23 KIAA1462 protein-coding KIAA1462 KIAA1462 O junctional protein associated with coronary artery disease 20121230 -9606 57609 DIP2B - - HGNC:29284|MIM:611379|Ensembl:ENSG00000066084|HPRD:08751|HPRD:11148|Vega:OTTHUMG00000169475 12 12q13.12 DIP2 disco-interacting protein 2 homolog B (Drosophila) protein-coding DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) O disco-interacting protein 2 homolog B 20121230 -9606 57610 RANBP10 - - HGNC:29285|MIM:614031|Ensembl:ENSG00000141084|HPRD:15207 16 16q22.1 RAN binding protein 10 protein-coding RANBP10 RAN binding protein 10 O ran-binding protein 10 20121230 -9606 57611 ISLR2 UNQ1885/PRO4329 LINX HGNC:29286|MIM:614179|Ensembl:ENSG00000167178|HPRD:13865|Vega:OTTHUMG00000137624 15 15q24.1 immunoglobulin superfamily containing leucine-rich repeat 2 protein-coding ISLR2 immunoglobulin superfamily containing leucine-rich repeat 2 O immunoglobulin superfamily containing leucine-rich repeat protein 2|leucine-rich repeat domain and immunoglobulin domain-containing axon extension protein 20121230 -9606 57612 ERV3-2 - - HGNC:22218 7 7q33 endogenous retrovirus group 3, member 2 unknown ERV3-2 endogenous retrovirus group 3, member 2 O - 20120710 -9606 57613 KIAA1467 - - HGNC:29288|Ensembl:ENSG00000084444|HPRD:11149|Vega:OTTHUMG00000168774 12 12p13.1 KIAA1467 protein-coding KIAA1467 KIAA1467 O uncharacterized protein KIAA1467 20121230 -9606 57614 KIAA1468 - HsT3308|HsT885 HGNC:29289|Ensembl:ENSG00000134444|HPRD:13866|Vega:OTTHUMG00000132780 18 18q21.33 KIAA1468 protein-coding KIAA1468 KIAA1468 O lisH domain and HEAT repeat-containing protein KIAA1468 20121230 -9606 57615 ZNF492 - ZNF115 HGNC:23707|Ensembl:ENSG00000229676 19 19p12 zinc finger protein 492 protein-coding ZNF492 zinc finger protein 492 O zinc finger protein 115 (Y20) 20121230 -9606 57616 TSHZ3 - TSH3|ZNF537 HGNC:30700|MIM:614119|Ensembl:ENSG00000121297|HPRD:18351|Vega:OTTHUMG00000150184 19 19q12 teashirt zinc finger homeobox 3 protein-coding TSHZ3 teashirt zinc finger homeobox 3 O teashirt 3|teashirt family zinc finger 3|teashirt homolog 3|zinc finger protein 537 20121230 -9606 57617 VPS18 - PEP3 HGNC:15972|MIM:608551|Ensembl:ENSG00000104142|HPRD:09776|Vega:OTTHUMG00000130135 15 15q14-q15 vacuolar protein sorting 18 homolog (S. cerevisiae) protein-coding VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae) O hVPS18|vacuolar protein sorting protein 18|vacuolar protein sorting-associated protein 18 homolog 20121230 -9606 57619 SHROOM3 MSTP013 APXL3|SHRM|ShrmL HGNC:30422|MIM:604570|Ensembl:ENSG00000138771|HPRD:07053|Vega:OTTHUMG00000157075 4 4q21.1 shroom family member 3 protein-coding SHROOM3 shroom family member 3 O F-actin-binding protein|protein Shroom3|shroom-related protein 20121230 -9606 57620 STIM2 - - HGNC:19205|MIM:610841|Ensembl:ENSG00000109689|HPRD:11609|Vega:OTTHUMG00000097805 4 4p15.2 stromal interaction molecule 2 protein-coding STIM2 stromal interaction molecule 2 O - 20121230 -9606 57621 ZBTB2 - ZNF437 HGNC:20868|Ensembl:ENSG00000181472|HPRD:10314|Vega:OTTHUMG00000015834 6 6q25.1 zinc finger and BTB domain containing 2 protein-coding ZBTB2 zinc finger and BTB domain containing 2 O zinc finger and BTB domain-containing protein 2 20121230 -9606 57622 LRFN1 - SALM2 HGNC:29290|MIM:612807|Ensembl:ENSG00000128011 19 19q13.2 leucine rich repeat and fibronectin type III domain containing 1 protein-coding LRFN1 leucine rich repeat and fibronectin type III domain containing 1 O leucine-rich repeat and fibronectin type III domain-containing protein 1|synaptic adhesion-like molecule 2 20121230 -9606 57623 ZFAT - AITD3|ZFAT1|ZNF406 HGNC:19899|MIM:610931|Ensembl:ENSG00000066827|HPRD:11712|Vega:OTTHUMG00000164321 8 8q24.22 zinc finger and AT hook domain containing protein-coding ZFAT zinc finger and AT hook domain containing O zinc finger gene in autoimmune thyroid disease|zinc finger protein 406|zinc finger protein ZFAT|zinc-finger gene in AITD susceptibility region 20121230 -9606 57624 NYAP2 - KIAA1486 HGNC:29291|Ensembl:ENSG00000144460|Vega:OTTHUMG00000153450 2 2q36.3 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 O neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 20121230 -9606 57626 KLHL1 RP11-394C23.1 MRP2 HGNC:6352|MIM:605332|Ensembl:ENSG00000150361|HPRD:05623|Vega:OTTHUMG00000017056 13 13q21 kelch-like 1 (Drosophila) protein-coding KLHL1 kelch-like 1 (Drosophila) O Mayven-related protein 2|kelch-like protein 1 20121230 -9606 57628 DPP10 - DPL2|DPPY|DPRP3 HGNC:20823|MIM:608209|Ensembl:ENSG00000175497|HPRD:07083|Vega:OTTHUMG00000153294 2 2q14.1 dipeptidyl-peptidase 10 (non-functional) protein-coding DPP10 dipeptidyl-peptidase 10 (non-functional) O DPP X|DPRP-3|dipeptidyl peptidase 10|dipeptidyl peptidase IV-related protein 3|dipeptidyl peptidase X|dipeptidyl peptidase like protein 2|dipeptidyl peptidase-like protein 2|inactive dipeptidyl peptidase 10 20121230 -9606 57630 SH3RF1 - POSH|RNF142|SH3MD2 HGNC:17650|Ensembl:ENSG00000154447|HPRD:15335|Vega:OTTHUMG00000161010 4 4q32.3 SH3 domain containing ring finger 1 protein-coding SH3RF1 SH3 domain containing ring finger 1 O E3 ubiquitin-protein ligase SH3RF1|SH3 domain-containing RING finger protein 1|SH3 multiple domains 2|SH3 multiple domains protein 2|plenty of SH3 domains|plenty of SH3s|putative E3 ubiquitin-protein ligase SH3RF1|ring finger protein 142 20121230 -9606 57631 LRCH2 RP6-204F4.4 dA204F4.4 HGNC:29292|Ensembl:ENSG00000130224|HPRD:06602|Vega:OTTHUMG00000022233 X Xq23 leucine-rich repeats and calponin homology (CH) domain containing 2 protein-coding LRCH2 leucine-rich repeats and calponin homology (CH) domain containing 2 O leucine-rich repeat and calponin homology domain-containing protein 2 20121230 -9606 57633 LRRN1 Nbla10449 FIGLER3|NLRR-1 HGNC:20980|Ensembl:ENSG00000175928|HPRD:14320|Vega:OTTHUMG00000154934 3 3p26.2 leucine rich repeat neuronal 1 protein-coding LRRN1 leucine rich repeat neuronal 1 O fibronectin type III, immunoglobulin and leucine rich repeat domains 3|leucine-rich repeat neuronal protein 1|neuronal leucine-rich repeat protein 1 20121230 -9606 57634 EP400 - CAGH32|P400|TNRC12 HGNC:11958|MIM:606265|Ensembl:ENSG00000183495|HPRD:09378|Vega:OTTHUMG00000150175 12 12q24.33 E1A binding protein p400 protein-coding EP400 E1A binding protein p400 O CAG repeat protein 32|E1A-binding protein p400|domino homolog|hDomino|p400 SWI2/SNF2-related protein|p400 kDa SWI2/SNF2-related protein|trinucleotide repeat containing 12|trinucleotide repeat-containing gene 12 protein 20121230 -9606 57636 ARHGAP23 - - HGNC:29293|MIM:610590|Ensembl:ENSG00000225485|Vega:OTTHUMG00000170040 17 17q12 Rho GTPase activating protein 23 protein-coding ARHGAP23 Rho GTPase activating protein 23 O rho GTPase-activating protein 23|rho-type GTPase-activating protein 23 20121230 -9606 57639 CCDC146 - - HGNC:29296|Ensembl:ENSG00000135205|HPRD:11150|Vega:OTTHUMG00000162595 7 7q11.23 coiled-coil domain containing 146 protein-coding CCDC146 coiled-coil domain containing 146 O coiled-coil domain-containing protein 146 20121230 -9606 57642 COL20A1 RP11-261N11.13-004 bA261N11.4 HGNC:14670|Ensembl:ENSG00000101203|HPRD:17215|Vega:OTTHUMG00000032964 20 20q13.33 collagen, type XX, alpha 1 protein-coding COL20A1 collagen, type XX, alpha 1 O collagen alpha-1(XX) chain|collagen-like protein 20121230 -9606 57643 ZSWIM5 RP11-69J16.3 - HGNC:29299|Ensembl:ENSG00000162415|Vega:OTTHUMG00000008950 1 1p34.1 zinc finger, SWIM-type containing 5 protein-coding ZSWIM5 zinc finger, SWIM-type containing 5 O zinc finger SWIM domain-containing protein 5|zinc finger, SWIM domain containing 5 20121230 -9606 57644 MYH7B RP4-756N5.1 MHC14|MYH14 HGNC:15906|MIM:609928|Ensembl:ENSG00000078814|HPRD:11379|Vega:OTTHUMG00000032320 20 20q11.22 myosin, heavy chain 7B, cardiac muscle, beta protein-coding MYH7B myosin, heavy chain 7B, cardiac muscle, beta O U937-associated antigen|antigen MLAA-21|myosin heavy chain 7B, cardiac muscle beta isoform|myosin, heavy polypeptide 7B, cardiac muscle, beta|myosin-7B|slow A MYH14 20121230 -9606 57645 POGK LST003 BASS2|KRBOX2 HGNC:18800|Ensembl:ENSG00000143157|HPRD:17872|Vega:OTTHUMG00000034325 1 1q24.1 pogo transposable element with KRAB domain protein-coding POGK pogo transposable element with KRAB domain O KRAB box domain containing 2 20121230 -9606 57646 USP28 - - HGNC:12625|MIM:610748|Ensembl:ENSG00000048028|HPRD:15632|Vega:OTTHUMG00000168205 11 11q23 ubiquitin specific peptidase 28 protein-coding USP28 ubiquitin specific peptidase 28 O deubiquitinating enzyme 28|ubiquitin carboxyl-terminal hydrolase 28|ubiquitin specific protease 28|ubiquitin thioesterase 28|ubiquitin thiolesterase 28|ubiquitin-specific-processing protease 28 20121230 -9606 57647 DHX37 - DDX37 HGNC:17210|Ensembl:ENSG00000150990|HPRD:10883|Vega:OTTHUMG00000168547 12 12q24.31 DEAH (Asp-Glu-Ala-His) box polypeptide 37 protein-coding DHX37 DEAH (Asp-Glu-Ala-His) box polypeptide 37 O DEAD/DEAH box helicase DDX37|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 37|DEAH box protein 37|probable ATP-dependent RNA helicase DHX37 20121230 -9606 57648 KIAA1522 - - HGNC:29301|Ensembl:ENSG00000162522|Vega:OTTHUMG00000008088 1 1p35.1 KIAA1522 protein-coding KIAA1522 KIAA1522 O uncharacterized protein KIAA1522 20121230 -9606 57649 PHF12 - PF1 HGNC:20816|Ensembl:ENSG00000109118|HPRD:15123|Vega:OTTHUMG00000132676 17 17q11.2 PHD finger protein 12 protein-coding PHF12 PHD finger protein 12 O PHD factor 1|PHD zinc finger transcription factor 20121230 -9606 57650 KIAA1524 - CIP2A|p90 HGNC:29302|MIM:610643|Ensembl:ENSG00000163507|HPRD:11151|Vega:OTTHUMG00000159233 3 3q13.13 KIAA1524 protein-coding KIAA1524 KIAA1524 O cancerous inhibitor of PP2A|p90 autoantigen|protein CIP2A 20121230 -9606 57653 LOC100499484-C9ORF174 - - HPRD:11152 9 9q22.33 LOC100499484-C9orf174 readthrough miscRNA - - - - 20121230 -9606 57654 UVSSA - KIAA1530|UVSS3 HGNC:29304|MIM:614632|Ensembl:ENSG00000163945|HPRD:17216|Vega:OTTHUMG00000160167 4 4p16.3 UV-stimulated scaffold protein A protein-coding UVSSA UV-stimulated scaffold protein A O - 20121230 -9606 57655 GRAMD1A - KIAA1533 HGNC:29305|Ensembl:ENSG00000089351|HPRD:11153 19 19q13.13 GRAM domain containing 1A protein-coding GRAMD1A GRAM domain containing 1A O GRAM domain-containing protein 1A 20121230 -9606 57657 HCN3 - - HGNC:19183|MIM:609973|Ensembl:ENSG00000143630|HPRD:17093|Vega:OTTHUMG00000035872 1 1q22 hyperpolarization activated cyclic nucleotide-gated potassium channel 3 protein-coding HCN3 hyperpolarization activated cyclic nucleotide-gated potassium channel 3 O potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 20121230 -9606 57658 CALCOCO1 PP13275 Cocoa|calphoglin HGNC:29306|Ensembl:ENSG00000012822|HPRD:13868|Vega:OTTHUMG00000170095 12 12q13.13 calcium binding and coiled-coil domain 1 protein-coding CALCOCO1 calcium binding and coiled-coil domain 1 O calcium-binding and coiled-coil domain-containing protein 1|coiled-coil coactivator protein|coiled-coil leucine zipper coactivator 1|inorganic pyrophosphatase activator|sarcoma antigen NY-SAR-3 20121230 -9606 57659 ZBTB4 - KAISO-L1|ZNF903 HGNC:23847|MIM:612308|Ensembl:ENSG00000174282|HPRD:11693|Vega:OTTHUMG00000108137 17 17p13.1 zinc finger and BTB domain containing 4 protein-coding ZBTB4 zinc finger and BTB domain containing 4 O KAISO-like zinc finger protein 1|zinc finger and BTB domain-containing protein 4 20121230 -9606 57661 PHRF1 - RNF221 HGNC:24351|MIM:611780|Ensembl:ENSG00000070047|HPRD:13870|Vega:OTTHUMG00000165141 11 11p15.5 PHD and ring finger domains 1 protein-coding PHRF1 PHD and ring finger domains 1 O CTD binding SR like protein rA9|CTD-binding SR-like protein rA9|PHD and RING finger domain-containing protein 1 20121230 -9606 57662 CAMSAP3 - KIAA1543|NEZHA HGNC:29307|MIM:612685|Ensembl:ENSG00000076826 19 19p13.2 calmodulin regulated spectrin-associated protein family, member 3 protein-coding CAMSAP3 calmodulin regulated spectrin-associated protein family, member 3 O calmodulin-regulated spectrin-associated protein 3|protein Nezha 20121230 -9606 57663 USP29 - HOM-TES-84/86 HGNC:18563|MIM:609546|Ensembl:ENSG00000131864|HPRD:07163 19 19q13.43 ubiquitin specific peptidase 29 protein-coding USP29 ubiquitin specific peptidase 29 O deubiquitinating enzyme 29|ubiquitin carboxyl-terminal hydrolase 29|ubiquitin thioesterase 29|ubiquitin thiolesterase 29|ubiquitin-specific processing protease|ubiquitin-specific-processing protease 29 20121230 -9606 57664 PLEKHA4 - PEPP1 HGNC:14339|MIM:607769|Ensembl:ENSG00000105559|HPRD:09683 19 19q13.33 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 protein-coding PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 O PEPP-1|PH domain-containing family A member 4|phosphoinositol 3-phosphate binding protein-1|phosphoinositol 3-phosphate-binding PH domain protein 1|phosphoinositol 3-phosphate-binding protein 1|pleckstrin homology domain-containing family A member 4 20121230 -9606 57665 RDH14 UNQ529/PRO1072 PAN2|SDR7C4 HGNC:19979|Ensembl:ENSG00000240857|HPRD:10190|Vega:OTTHUMG00000090705 2 2p24.2 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding RDH14 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) O alcohol dehydrogenase PAN2|pancreas protein 2|retinol dehydrogenase 14|retinol dehydrogenase 14 (all-trans and 9-cis)|short chain dehydrogenase/reductase family 7C, member 4 20121230 -9606 57666 FBRSL1 - - HGNC:29308|Ensembl:ENSG00000112787|Vega:OTTHUMG00000167991 12 12q24.33 fibrosin-like 1 protein-coding FBRSL1 fibrosin-like 1 O AUTS2-like protein|HBV X-transactivated gene 9 protein|HBV XAg-transactivated protein 9|fibrosin-1-like protein 20121230 -9606 57669 EPB41L5 - BE37|YMO1 HGNC:19819|MIM:611730|Ensembl:ENSG00000115109|HPRD:13273|Vega:OTTHUMG00000131433 2 2q14.2 erythrocyte membrane protein band 4.1 like 5 protein-coding EPB41L5 erythrocyte membrane protein band 4.1 like 5 O band 4.1-like protein 5 20121230 -9606 57670 KIAA1549 - - HGNC:22219|MIM:613344|Ensembl:ENSG00000122778|Vega:OTTHUMG00000157214 7 7q34 KIAA1549 protein-coding KIAA1549 KIAA1549 O UPF0606 protein KIAA1549 20121230 -9606 57673 BEND3 - KIAA1553|RP11-59I9.2 HGNC:23040|Ensembl:ENSG00000178409 6 6q21 BEN domain containing 3 protein-coding BEND3 BEN domain containing 3 O BEN domain-containing protein 3 20121230 -9606 57674 RNF213 hCG_1812857 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 HGNC:14539|MIM:613768|Ensembl:ENSG00000173821|HPRD:10716|Vega:OTTHUMG00000161415 17 17q25.3 ring finger protein 213 protein-coding RNF213 ring finger protein 213 O ALK lymphoma oligomerization partner on chromosome 17|RING finger protein 213|mysterin 20121230 -9606 57677 ZFP14 - ZNF531 HGNC:29312|Ensembl:ENSG00000142065|HPRD:17217|Vega:OTTHUMG00000180675 19 19q13.12 ZFP14 zinc finger protein protein-coding ZFP14 ZFP14 zinc finger protein O zfp-14|zinc finger protein 14 homolog|zinc finger protein 531 20121230 -9606 57678 GPAM RP11-426E5.2 GPAT|GPAT1 HGNC:24865|MIM:602395|Ensembl:ENSG00000119927|HPRD:03865|Vega:OTTHUMG00000019055 10 10q25.2 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding GPAM glycerol-3-phosphate acyltransferase, mitochondrial O GPAT-1|glycerol 3-phosphate acyltransferase, mitochondrial|glycerol-3-phosphate acyltransferase 1, mitochondrial 20121230 -9606 57679 ALS2 - ALS2CR6|ALSJ|IAHSP|PLSJ HGNC:443|MIM:606352|Ensembl:ENSG00000003393|HPRD:05893|Vega:OTTHUMG00000154507 2 2q33.1 amyotrophic lateral sclerosis 2 (juvenile) protein-coding ALS2 amyotrophic lateral sclerosis 2 (juvenile) O alsin|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 6 protein|amyotrophic lateral sclerosis 2 protein 20121230 -9606 57680 CHD8 - HELSNF1 HGNC:20153|MIM:610528|Ensembl:ENSG00000100888|HPRD:16712|Vega:OTTHUMG00000170759 14 14q11.2 chromodomain helicase DNA binding protein 8 protein-coding CHD8 chromodomain helicase DNA binding protein 8 O ATP-dependent helicase CHD8|axis duplication inhibitor|chromodomain-helicase-DNA-binding protein 8|duplin|helicase with SNF2 domain 1 20121230 -9606 57683 ZDBF2 - - HGNC:29313|Ensembl:ENSG00000204186|Vega:OTTHUMG00000154648 2 2q33.3 zinc finger, DBF-type containing 2 protein-coding ZDBF2 zinc finger, DBF-type containing 2 O DBF4-type zinc finger-containing protein 2 20121230 -9606 57684 ZBTB26 - ZNF481|bioref HGNC:23383|Ensembl:ENSG00000171448|HPRD:15692|Vega:OTTHUMG00000020627 9 9q33.2 zinc finger and BTB domain containing 26 protein-coding ZBTB26 zinc finger and BTB domain containing 26 O zinc finger and BTB domain-containing protein 26|zinc finger protein 481|zinc finger protein 483|zinc finger protein Bioref 20121230 -9606 57685 CACHD1 - RP4-655E10.1 HGNC:29314|Ensembl:ENSG00000158966|HPRD:13874|Vega:OTTHUMG00000009030 1 1p31.3 cache domain containing 1 protein-coding CACHD1 cache domain containing 1 O VWFA and cache domain-containing protein 1|cache domain-containing protein 1|von Willebrand factor type A and cache domain containing 1 20121230 -9606 57687 VAT1L - - HGNC:29315|Ensembl:ENSG00000171724|HPRD:13875|Vega:OTTHUMG00000176845 16 16q23.1 vesicle amine transport protein 1 homolog (T. californica)-like protein-coding VAT1L vesicle amine transport protein 1 homolog (T. californica)-like O synaptic vesicle membrane protein VAT-1 homolog-like|vesicle amine transport protein 1 homolog-like (T. californica) 20121230 -9606 57688 ZSWIM6 hCG_18020 - HGNC:29316|Ensembl:ENSG00000130449|Vega:OTTHUMG00000162388 5 5q12.1 zinc finger, SWIM-type containing 6 protein-coding ZSWIM6 zinc finger, SWIM-type containing 6 O zinc finger SWIM domain-containing protein 6|zinc finger, SWIM domain containing 6 20121230 -9606 57689 LRRC4C UNQ292/PRO331 NGL-1|NGL1 HGNC:29317|MIM:608817|Ensembl:ENSG00000148948|HPRD:12303|Vega:OTTHUMG00000166383 11 11p12 leucine rich repeat containing 4C protein-coding LRRC4C leucine rich repeat containing 4C O leucine-rich repeat-containing protein 4C|netrin-G1 ligand 20121230 -9606 57690 TNRC6C - - HGNC:29318|MIM:610741|Ensembl:ENSG00000078687|HPRD:10026|Vega:OTTHUMG00000132642 17 17q25.3 trinucleotide repeat containing 6C protein-coding TNRC6C trinucleotide repeat containing 6C O trinucleotide repeat-containing gene 6C protein 20121230 -9606 57691 KIAA1586 - - HGNC:21360|Ensembl:ENSG00000168116|HPRD:17218|Vega:OTTHUMG00000014915 6 6p12.1 KIAA1586 protein-coding KIAA1586 KIAA1586 O uncharacterized protein KIAA1586 20121230 -9606 57692 MAGEE1 RP4-596C3.1 DAMAGE|HCA1 HGNC:24934|MIM:300759|Ensembl:ENSG00000198934|HPRD:06583|Vega:OTTHUMG00000021879 X Xq13.3 melanoma antigen family E, 1 protein-coding MAGEE1 melanoma antigen family E, 1 O MAGE-E1 antigen|alpha-dystrobrevin-associated MAGE Protein|dystrobrevin-associated MAGE protein|hepatocellular carcinoma-associated HCA1|hepatocellular carcinoma-associated protein 1|melanoma-associated antigen E1 20121230 -9606 57693 ZNF317 - - HGNC:13507|MIM:613864|Ensembl:ENSG00000130803|HPRD:11706|Vega:OTTHUMG00000179932 19 19p13 zinc finger protein 317 protein-coding ZNF317 zinc finger protein 317 O KRAB-containing zinc finger protein 317 20121230 -9606 57695 USP37 - - HGNC:20063|Ensembl:ENSG00000135913|HPRD:07506|Vega:OTTHUMG00000133113 2 2q35 ubiquitin specific peptidase 37 protein-coding USP37 ubiquitin specific peptidase 37 O deubiquitinating enzyme 37|tmp_locus_50|ubiquitin carboxyl-terminal hydrolase 37|ubiquitin specific protease 37|ubiquitin thioesterase 37|ubiquitin thiolesterase 37|ubiquitin-specific-processing protease 37 20121230 -9606 57696 DDX55 - - HGNC:20085|Ensembl:ENSG00000111364|HPRD:13130|Vega:OTTHUMG00000168695 12 12q24.31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 protein-coding DDX55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 O ATP-dependent RNA helicase DDX55|DEAD box protein 55 20121230 -9606 57697 FANCM - FAAP250|KIAA1596 HGNC:23168|MIM:609644|Ensembl:ENSG00000187790|HPRD:13876|Vega:OTTHUMG00000170807 14 14q21.2 Fanconi anemia, complementation group M protein-coding FANCM Fanconi anemia, complementation group M O ATP-dependent RNA helicase FANCM|Fanconi anemia group M protein|fanconi anemia-associated polypeptide of 250 kDa|protein Hef ortholog 20121230 -9606 57698 KIAA1598 - - HGNC:29319|MIM:611171|Ensembl:ENSG00000187164|HPRD:11155|Vega:OTTHUMG00000019114 10 10q25.3 KIAA1598 protein-coding KIAA1598 KIAA1598 O shootin-1|shootin1 20121230 -9606 57699 CPNE5 - COPN5|CPN5 HGNC:2318|MIM:604209|Ensembl:ENSG00000124772|HPRD:05018|Vega:OTTHUMG00000014602 6 6p21.1 copine V protein-coding CPNE5 copine V O copine-5 20121230 -9606 57700 FAM160B1 RP11-106M7.3 KIAA1600|bA106M7.3 HGNC:29320|Ensembl:ENSG00000151553|HPRD:17219|Vega:OTTHUMG00000019092 10 10q25.3 family with sequence similarity 160, member B1 protein-coding FAM160B1 family with sequence similarity 160, member B1 O protein FAM160B1 20121230 -9606 57701 NCKAP5L FP1193 KIAA1602 HGNC:29321|Ensembl:ENSG00000167566|Vega:OTTHUMG00000156969 12 12q13.12 NCK-associated protein 5-like protein-coding NCKAP5L NCK-associated protein 5-like O nck-associated protein 5-like 20121230 -9606 57703 CWC22 - EIF4GL|NCM|fSAPb HGNC:29322|Ensembl:ENSG00000163510|HPRD:17220|Vega:OTTHUMG00000154244 2 2q31.3 CWC22 spliceosome-associated protein homolog (S. cerevisiae) protein-coding CWC22 CWC22 spliceosome-associated protein homolog (S. cerevisiae) O functional spliceosome-associated protein b|nucampholin homolog|pre-mRNA-splicing factor CWC22 homolog 20121230 -9606 57704 GBA2 AD035 - HGNC:18986|MIM:609471|Ensembl:ENSG00000070610|HPRD:13569|Vega:OTTHUMG00000021024 9 9p13.3 glucosidase, beta (bile acid) 2 protein-coding GBA2 glucosidase, beta (bile acid) 2 O NLGase|beta-glucocerebrosidase 2|beta-glucosidase 2|bile acid beta-glucosidase|glucosylceramidase 2|non-lysosomal glucosylceramidase 20121230 -9606 57705 WDFY4 hCG_1745555 C10orf64 HGNC:29323|MIM:613316|Ensembl:ENSG00000128815|Vega:OTTHUMG00000018180 10 10q11.23 WDFY family member 4 protein-coding WDFY4 WDFY family member 4 O WD repeat- and FYVE domain-containing protein 4 20121230 -9606 57706 DENND1A - FAM31A|KIAA1608|RP11-230L22.3 HGNC:29324|MIM:613633|Ensembl:ENSG00000119522|HPRD:17221|Vega:OTTHUMG00000020643 9 9q33.3 DENN/MADD domain containing 1A protein-coding DENND1A DENN/MADD domain containing 1A O DENN domain-containing protein 1A|connecdenn 1 20121230 -9606 57707 KIAA1609 - - HGNC:29325|Ensembl:ENSG00000140950|HPRD:13877|Vega:OTTHUMG00000176739 16 16q24.1 KIAA1609 protein-coding KIAA1609 KIAA1609 O TLD domain-containing protein KIAA1609 20121230 -9606 57708 MIER1 RP5-944N15.1 ER1|MI-ER1|hMI-ER1 HGNC:29657|Ensembl:ENSG00000198160|HPRD:11362|Vega:OTTHUMG00000009194 1 1p31.3 mesoderm induction early response 1 homolog (Xenopus laevis) protein-coding MIER1 mesoderm induction early response 1 homolog (Xenopus laevis) O mesoderm induction early response protein 1 20121230 -9606 57709 SLC7A14 - - HGNC:29326|Ensembl:ENSG00000013293|HPRD:17222|Vega:OTTHUMG00000158941 3 3q26.2 solute carrier family 7 (orphan transporter), member 14 protein-coding SLC7A14 solute carrier family 7 (orphan transporter), member 14 O probable cationic amino acid transporter|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14|solute carrier family 7 member 14 20121230 -9606 57710 KIAA1614 hCG_24169 RP11-46A10.3 HGNC:29327|Ensembl:ENSG00000135835|Vega:OTTHUMG00000035183 1 1q25.3 KIAA1614 protein-coding KIAA1614 KIAA1614 O uncharacterized protein KIAA1614 20121230 -9606 57711 ZNF529 - - HGNC:29328|Ensembl:ENSG00000186020|HPRD:15821|Vega:OTTHUMG00000180714 19 19q13.13 zinc finger protein 529 protein-coding ZNF529 zinc finger protein 529 O - 20121230 -9606 57713 SFMBT2 RP11-393K12.3 - HGNC:20256|Ensembl:ENSG00000198879|Vega:OTTHUMG00000017630 10 10p14 Scm-like with four mbt domains 2 protein-coding SFMBT2 Scm-like with four mbt domains 2 O Scm-related gene containing four mbt domains 2|scm-like with four MBT domains protein 2 20121230 -9606 57715 SEMA4G RP11-108L7.1 - HGNC:10735|Ensembl:ENSG00000095539|HPRD:10218|Vega:OTTHUMG00000018922 10 10q24.31 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G protein-coding SEMA4G sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G O semaphorin-4G 20121230 -9606 57716 PRX - CMT4F HGNC:13797|MIM:605725|Ensembl:ENSG00000105227|HPRD:05758 19 19q13.2 periaxin protein-coding PRX periaxin O - 20121230 -9606 57717 PCDHB16 - ME1|PCDH-BETA16|PCDH3X|PCDHB8a HGNC:14546|MIM:606345|Ensembl:ENSG00000196963|HPRD:06961|Vega:OTTHUMG00000129605 5 5q31 protocadherin beta 16 protein-coding PCDHB16 protocadherin beta 16 O PCDH-beta-16|PCDHbeta 16|cadherin ME1|protocadherin beta 8a|protocadherin beta-16|protocadherin-3x 20121230 -9606 57718 PPP4R4 - KIAA1622|PP4R4 HGNC:23788|Ensembl:ENSG00000119698|HPRD:13878|Vega:OTTHUMG00000171344 14 14q32.2 protein phosphatase 4, regulatory subunit 4 protein-coding PPP4R4 protein phosphatase 4, regulatory subunit 4 O HEAT-like repeat-containing protein|serine/threonine-protein phosphatase 4 regulatory subunit 4 20121230 -9606 57719 ANO8 - KIAA1623|TMEM16H HGNC:29329|MIM:610216|Ensembl:ENSG00000074855|HPRD:17223 19 19p13.11 anoctamin 8 protein-coding ANO8 anoctamin 8 O anoctamin-8|transmembrane protein 16H 20121230 -9606 57720 GPR107 - GCDRP|LUSTR1|RP11-88G17|bA138E2.2 HGNC:17830|Ensembl:ENSG00000148358|HPRD:17054|Vega:OTTHUMG00000020804 9 9q34.11 G protein-coupled receptor 107 protein-coding GPR107 G protein-coupled receptor 107 O lung seven transmembrane receptor 1|protein GPR107 20121230 -9606 57721 METTL14 - - HGNC:29330|Ensembl:ENSG00000145388|HPRD:13879|Vega:OTTHUMG00000161167 4 4q26 methyltransferase like 14 protein-coding METTL14 methyltransferase like 14 O methyltransferase-like protein 14 20121230 -9606 57722 IGDCC4 - DDM36|NOPE HGNC:13770|Ensembl:ENSG00000103742|HPRD:11399|Vega:OTTHUMG00000133136 15 15q22.31 immunoglobulin superfamily, DCC subclass, member 4 protein-coding IGDCC4 immunoglobulin superfamily, DCC subclass, member 4 O hDDM36|immunoglobulin superfamily DCC subclass member 4|likely ortholog of mouse neighbor of Punc E11|neighbor of Punc E11 20121230 -9606 57724 EPG5 - HEEW1|KIAA1632|hEPG5 HGNC:29331|Ensembl:ENSG00000152223|HPRD:11157|Vega:OTTHUMG00000132626 18 18q12.3 ectopic P-granules autophagy protein 5 homolog (C. elegans) protein-coding EPG5 ectopic P-granules autophagy protein 5 homolog (C. elegans) O ectopic P granules protein 5 homolog 20121230 -9606 57727 NCOA5 RP11-465L10.6 CIA|bA465L10.6 HGNC:15909|Ensembl:ENSG00000124160|HPRD:14813|Vega:OTTHUMG00000032639 20 20q12-q13.12 nuclear receptor coactivator 5 protein-coding NCOA5 nuclear receptor coactivator 5 O NCoA-5|coactivator independent of AF-2 20121230 -9606 57728 WDR19 - ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP HGNC:18340|MIM:608151|Ensembl:ENSG00000157796|HPRD:10489|Vega:OTTHUMG00000160466 4 4p14 WD repeat domain 19 protein-coding WDR19 WD repeat domain 19 O WD repeat membrane protein PWDMP|WD repeat-containing protein 19|intraflagellar transport 144 homolog 20121230 -9606 57730 ANKRD36B - KIAA1641 HGNC:29333|HPRD:10027 2 2q11.2 ankyrin repeat domain 36B protein-coding ANKRD36B ankyrin repeat domain 36B O CLL-associated antigen KW-1|ankyrin repeat domain-containing protein 36B|melanoma-associated antigen 20121230 -9606 57731 SPTBN4 - QV|SPNB4|SPTBN3 HGNC:14896|MIM:606214|Ensembl:ENSG00000160460|HPRD:09372 19 19q13.13 spectrin, beta, non-erythrocytic 4 protein-coding SPTBN4 spectrin, beta, non-erythrocytic 4 O beta-IV spectrin|spectrin beta chain, brain 3|spectrin beta chain, non-erythrocytic 4|spectrin, non-erythroid beta chain 3 20121230 -9606 57732 ZFYVE28 - LST2|LYST2 HGNC:29334|MIM:614176|Ensembl:ENSG00000159733|HPRD:11701|Vega:OTTHUMG00000160292 4 4p16.3 zinc finger, FYVE domain containing 28 protein-coding ZFYVE28 zinc finger, FYVE domain containing 28 O hLst2|lateral signaling target protein 2 homolog|zinc finger FYVE domain-containing protein 28 20121230 -9606 57733 GBA3 - CBGL1|GLUC|KLrP HGNC:19069|MIM:606619|Ensembl:ENSG00000249948|HPRD:09428|Vega:OTTHUMG00000160448 4 4p15.2 glucosidase, beta, acid 3 (cytosolic) protein-coding GBA3 glucosidase, beta, acid 3 (cytosolic) O cytosolic beta-glucosidase|cytosolic beta-glucosidase-like protein 1|klotho-related protein 20121230 -9606 57758 SCUBE2 - CEGB1|CEGF1|CEGP1 HGNC:30425|MIM:611747|Ensembl:ENSG00000175356|HPRD:18030|Vega:OTTHUMG00000163880 11 11p15.3 signal peptide, CUB domain, EGF-like 2 protein-coding SCUBE2 signal peptide, CUB domain, EGF-like 2 O signal peptide, CUB and EGF-like domain-containing protein 2 20121230 -9606 57760 SPG16 - SPG HGNC:14260|MIM:300266 X Xq11.2 spastic paraplegia 16 (complicated, X-linked recessive) unknown SPG16 spastic paraplegia 16 (complicated, X-linked recessive) O - 20120622 -9606 57761 TRIB3 RP5-1103G7.7 C20orf97|NIPK|SINK|SKIP3|TRB3 HGNC:16228|MIM:607898|Ensembl:ENSG00000101255|HPRD:09836|Vega:OTTHUMG00000031627 20 20p13-p12.2 tribbles homolog 3 (Drosophila) protein-coding TRIB3 tribbles homolog 3 (Drosophila) O TRB-3|neuronal cell death inducible putative kinase|neuronal cell death-inducible putative kinase|p65-interacting inhibitor of NF-kappa-B|p65-interacting inhibitor of NF-kappaB|tribbles homolog 3 20121230 -9606 57762 NS2 - - MIM:605275 - - Noonan syndrome 2 unknown - - - - 20110215 -9606 57763 ANKRA2 - ANKRA HGNC:13208|MIM:605787|Ensembl:ENSG00000164331|HPRD:12044|Vega:OTTHUMG00000102030 5 5q12-q13 ankyrin repeat, family A (RFXANK-like), 2 protein-coding ANKRA2 ankyrin repeat, family A (RFXANK-like), 2 O RFXANK-like protein 2|ankyrin repeat family A protein 2 20121230 -9606 57786 RBAK - ZNF769 HGNC:17680|MIM:608191|Ensembl:ENSG00000146587|HPRD:16296|Vega:OTTHUMG00000121155 7 7p22.1 RB-associated KRAB zinc finger protein-coding RBAK RB-associated KRAB zinc finger O RB-associated KRAB repressor|RB-associated KRAB zinc finger protein|zinc finger protein 769 20121230 -9606 57787 MARK4 - MARK4L|MARK4S|MARKL1|MARKL1L HGNC:13538|MIM:606495|Ensembl:ENSG00000007047|HPRD:09402|Vega:OTTHUMG00000181769 19 19q13.3 MAP/microtubule affinity-regulating kinase 4 protein-coding MARK4 MAP/microtubule affinity-regulating kinase 4 O MAP/microtubule affinity-regulating kinase like 1|MARK4 serine/threonine protein kinase 20121230 -9606 57788 RFMN - - MIM:300258 X - Roifman syndrome unknown - - - - 20120622 -9606 57789 MTBS - MTBSX MIM:300259 - - Mycobacterium tuberculosis, susceptibility to infection by unknown - - - - 20121018 -9606 57790 MRXSL - - MIM:300260 - - Lubs X-linked mental retardation syndrome unknown - - - - 20120622 -9606 57791 MRXSA - - MIM:300261 X Xq28 Armfield X-linked mental retardation syndrome unknown - - - - 20120622 -9606 57792 MRXSAB - - MIM:300262 X Xq13.2 Abidi X-linked mental retardation syndrome unknown - - - - 20120622 -9606 57794 SUGP1 - F23858|RBP|SF4 HGNC:18643|MIM:607992|Ensembl:ENSG00000105705|HPRD:10468|Vega:OTTHUMG00000182223 19 19p13.11 SURP and G patch domain containing 1 protein-coding SUGP1 SURP and G patch domain containing 1 O RNA-binding protein RBP|SURP and G-patch domain-containing protein 1|splicing factor 4 20121230 -9606 57795 FAM5B - BRINP2|DBCCR1L2|RP5-1026E2.1 HGNC:13746|Ensembl:ENSG00000198797|HPRD:13891|Vega:OTTHUMG00000034953 1 1q24 family with sequence similarity 5, member B protein-coding FAM5B family with sequence similarity 5, member B O BMP/retinoic acid-inducible neural-specific protein 2|DBCCR1-like protein 2|DBCCR1-like2|protein FAM5B 20121230 -9606 57796 DKFZP761C1711 - - - - - uncharacterized protein DKFZp761C1711 protein-coding - - - - 20111025 -9606 57798 GATAD1 tcag7.279 CMD2B|ODAG|RG083M05.2 HGNC:29941|MIM:614518|Ensembl:ENSG00000157259|HPRD:17656|Vega:OTTHUMG00000131201 7 7q21-q22 GATA zinc finger domain containing 1 protein-coding GATAD1 GATA zinc finger domain containing 1 O GATA zinc finger domain-containing protein 1|ocular development-associated gene protein 20121230 -9606 57799 RAB40C LA16c-398G5.1 RARL|RASL8C HGNC:18285|Ensembl:ENSG00000197562|HPRD:10182|Vega:OTTHUMG00000047854 16 16p13.3 RAB40C, member RAS oncogene family protein-coding RAB40C RAB40C, member RAS oncogene family O RAR (RAS like GTPASE) like|RAR like|RAS-like GTPase|RAS-like, family 8, member C|SOCS box-containing protein RAR3|rar-like protein|ras-like protein family member 8C|ras-related protein Rab-40C 20121230 -9606 57801 HES4 - bHLHb42 HGNC:24149|MIM:608060|Ensembl:ENSG00000188290|HPRD:16273|Vega:OTTHUMG00000040758 1 1p36.33 hairy and enhancer of split 4 (Drosophila) protein-coding HES4 hairy and enhancer of split 4 (Drosophila) O bHLH factor Hes4|class B basic helix-loop-helix protein 42|hHES4|transcription factor HES-4 20121230 -9606 57804 POLD4 - POLDS|p12 HGNC:14106|MIM:611525|Ensembl:ENSG00000175482|HPRD:17873|Vega:OTTHUMG00000167135 11 11q13 polymerase (DNA-directed), delta 4, accessory subunit protein-coding POLD4 polymerase (DNA-directed), delta 4, accessory subunit O DNA polymerase delta smallest subunit p12|DNA polymerase delta subunit 4 20121230 -9606 57805 KIAA1967 - DBC-1|DBC1|NET35|p30 DBC|p30DBC HGNC:23360|MIM:607359|Ensembl:ENSG00000158941|HPRD:09159|Vega:OTTHUMG00000162249 8 8p22 KIAA1967 protein-coding KIAA1967 KIAA1967 O DBIRD complex subunit KIAA1967|deleted in breast cancer 1|p30 DBC protein 20121230 -9606 57817 HAMP UNQ487/PRO1003 HEPC|HFE2B|LEAP1|PLTR HGNC:15598|MIM:606464|Ensembl:ENSG00000105697|HPRD:05925 19 19q13.1 hepcidin antimicrobial peptide protein-coding HAMP hepcidin antimicrobial peptide O hepcidin|liver-expressed antimicrobial peptide 1|putative liver tumor regressor 20121230 -9606 57818 G6PC2 - IGRP HGNC:28906|MIM:608058|Ensembl:ENSG00000152254|HPRD:16272|Vega:OTTHUMG00000132182 2 2q24.3 glucose-6-phosphatase, catalytic, 2 protein-coding G6PC2 glucose-6-phosphatase, catalytic, 2 O G-6-Pase 2|G6Pase 2|glucose-6-phosphatase 2|islet-specific G6CP-related protein|islet-specific glucose-6-phosphatase catalytic subunit-related protein|islet-specific glucose-6-phosphatase-related protein 20121230 -9606 57819 LSM2 DAAP-21F2.6 C6orf28|G7B|YBL026W|snRNP HGNC:13940|MIM:607282|Ensembl:ENSG00000204392|HPRD:06282|Vega:OTTHUMG00000031121 6 6p21.3 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) O U6 snRNA-associated Sm-like protein LSm2|protein G7b|small nuclear ribonuclear protein D homolog|snRNP core Sm-like protein Sm-x5 20121230 -9606 57820 CCNB1IP1 - C14orf18|HEI10 HGNC:19437|MIM:608249|Ensembl:ENSG00000100814|HPRD:07000|Vega:OTTHUMG00000029509 14 14q11.2 cyclin B1 interacting protein 1, E3 ubiquitin protein ligase protein-coding CCNB1IP1 cyclin B1 interacting protein 1, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase CCNB1IP1|human enhancer of invasion 10 20121230 -9606 57821 C1orf114 - RP1-206D15.2 HGNC:28051|Ensembl:ENSG00000117477|HPRD:14258|Vega:OTTHUMG00000035448 1 1q24 chromosome 1 open reading frame 114 protein-coding C1orf114 chromosome 1 open reading frame 114 O uncharacterized protein C1orf114 20121230 -9606 57822 GRHL3 RP3-462O23.1 SOM|TFCP2L4 HGNC:25839|MIM:608317|Ensembl:ENSG00000158055|HPRD:12210|Vega:OTTHUMG00000003040 1 1p36.11 grainyhead-like 3 (Drosophila) protein-coding GRHL3 grainyhead-like 3 (Drosophila) O grainyhead-like protein 3 homolog|sister of mammalian grainyhead|sister-of-mammalian grainyhead|transcription factor CP2-like 4|transcription factor hSOM1 20121230 -9606 57823 SLAMF7 UNQ576/PRO1138 19A|CD319|CRACC|CS1 HGNC:21394|MIM:606625|Ensembl:ENSG00000026751|HPRD:09432|Vega:OTTHUMG00000024008 1 1q23.1-q24.1 SLAM family member 7 protein-coding SLAMF7 SLAM family member 7 O 19A24 protein|CD2 subset 1|CD2-like receptor activating cytotoxic cells|CD2-like receptor-activating cytotoxic cells|membrane protein FOAP-12|novel LY9 (lymphocyte antigen 9) like protein|protein 19A 20121230 -9606 57824 HMHB1 - HB-1|HLA-HB1 HGNC:29677|MIM:609961|Ensembl:ENSG00000158497|HPRD:17089|Vega:OTTHUMG00000163173 5 5q31.3 histocompatibility (minor) HB-1 protein-coding HMHB1 histocompatibility (minor) HB-1 O minor histocompatibility antigen HB-1|minor histocompatibility protein HB-1 20121230 -9606 57826 RAP2C - - HGNC:21165|Ensembl:ENSG00000123728|HPRD:06706|Vega:OTTHUMG00000022424 X Xq25 RAP2C, member of RAS oncogene family protein-coding RAP2C RAP2C, member of RAS oncogene family O ras-related protein Rap-2c|small GTPase RAP2C 20121230 -9606 57827 C6orf47 DADB-127H9.7 D6S53E|G4|NG34 HGNC:19076|Ensembl:ENSG00000204439|HPRD:12883|Vega:OTTHUMG00000031172 6 6p21.3 chromosome 6 open reading frame 47 protein-coding C6orf47 chromosome 6 open reading frame 47 O protein G4|uncharacterized protein C6orf47 20121230 -9606 57828 CATSPERG - C19orf15 HGNC:25243|MIM:613452|Ensembl:ENSG00000099338|HPRD:12698|Vega:OTTHUMG00000153223 19 19q13.1 catsper channel auxiliary subunit gamma protein-coding CATSPERG catsper channel auxiliary subunit gamma O cation channel sperm-associated protein subunit gamma|cation channel, sperm-associated, gamma 20121230 -9606 57829 ZP4 - ZBP|ZP1|ZPB|Zp-4 HGNC:15770|MIM:613514|Ensembl:ENSG00000116996|HPRD:18363|Vega:OTTHUMG00000039586 1 1q43 zona pellucida glycoprotein 4 protein-coding ZP4 zona pellucida glycoprotein 4 O zona pellucida B protein|zona pellucida protein B|zona pellucida sperm-binding protein 4 20121230 -9606 57830 KRTAP5-8 - KRTAP5-2|KRTAP5.8|UHSKerB HGNC:23603|Ensembl:ENSG00000241233|HPRD:17252|Vega:OTTHUMG00000057571 11 11q13.4 keratin associated protein 5-8 protein-coding KRTAP5-8 keratin associated protein 5-8 O UHS KERB-like protein|UHS KerB|UHS keratin B|keratin, ultra high-sulfur matrix protein B|keratin, ultrahigh sulfur, B|keratin-associated protein 5-8|keratin-associated protein 5.8|ultrahigh sulfur keratin-associated protein 5.8 20121230 -9606 57834 CYP4F11 - CYPIVF11 HGNC:13265|MIM:611517|Ensembl:ENSG00000171903|HPRD:07101|Vega:OTTHUMG00000182294 19 19p13.1 cytochrome P450, family 4, subfamily F, polypeptide 11 protein-coding CYP4F11 cytochrome P450, family 4, subfamily F, polypeptide 11 O cytochrome P450 4F11|cytochrome P450, subfamily IVF, polypeptide 11 20121230 -9606 57835 SLC4A5 - NBC4 HGNC:18168|MIM:606757|Ensembl:ENSG00000188687|HPRD:08420|Vega:OTTHUMG00000090263 2 2p13 solute carrier family 4, sodium bicarbonate cotransporter, member 5 protein-coding SLC4A5 solute carrier family 4, sodium bicarbonate cotransporter, member 5 O NBCe2|electrogenic sodium bicarbonate cotransporter 4 20121230 -9606 57862 ZNF410 - APA-1|APA1 HGNC:20144|Ensembl:ENSG00000119725|HPRD:18339|Vega:OTTHUMG00000171257 14 14q24.3 zinc finger protein 410 protein-coding ZNF410 zinc finger protein 410 O another partner for ARF 1|clones 23667 and 23775 zinc finger protein|zinc finger protein APA-1 20121230 -9606 57863 CADM3 CTA-134P22.1 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 HGNC:17601|MIM:609743|Ensembl:ENSG00000162706|HPRD:13733|Vega:OTTHUMG00000037177 1 1q21.2-q22 cell adhesion molecule 3 protein-coding CADM3 cell adhesion molecule 3 O TSLC1-like 1|TSLC1-like protein 1|brain immunoglobulin receptor|dendritic cell nectin-like protein 1 short isoform|immunoglobulin superfamily member 4B|immunoglobulin superfamily, member 4B|nectin-like 1|nectin-like protein 1|synaptic cell adhesion molecule 3 20121230 -9606 57864 SLC46A2 - Ly110|TSCOT HGNC:16055|MIM:608956|Ensembl:ENSG00000119457|HPRD:16411|Vega:OTTHUMG00000020513 9 9q32 solute carrier family 46, member 2 protein-coding SLC46A2 solute carrier family 46, member 2 O thymic stromal co-transporter|thymic stromal cotransporter homolog 20121230 -9606 57876 MUC3B - MUC3|MUC3A HGNC:13384|MIM:605633 7 7q22 mucin 3B, cell surface associated protein-coding MUC3B mucin 3B, cell surface associated O MUC-3B|intestinal mucin MUC3B|intestinal mucin-3B|mucin-3B 20120818 -9606 58155 PTBP2 - PTB|PTBLP|brPTB|nPTB|nPTB5|nPTB6|nPTB7|nPTB8 HGNC:17662|MIM:608449|Ensembl:ENSG00000117569|HPRD:12233|Vega:OTTHUMG00000010685 1 1p21.3 polypyrimidine tract binding protein 2 protein-coding PTBP2 polypyrimidine tract binding protein 2 O PTB-like protein|neural polypyrimidine tract binding protein|neural polypyrimidine tract-binding protein|neurally-enriched homolog of PTB|polypyrimidine tract-binding protein 2|splicing regulator 20121230 -9606 58156 OPA4 - - HGNC:32786|MIM:605293 18 18q12.2 optic atrophy 4 (autosomal dominant) unknown OPA4 optic atrophy 4 (autosomal dominant) O - 20120622 -9606 58157 NGB - - HGNC:14077|MIM:605304|Ensembl:ENSG00000165553|HPRD:05602|Vega:OTTHUMG00000171558 14 14q24.3 neuroglobin protein-coding NGB neuroglobin O - 20121230 -9606 58158 NEUROD4 - ATH-3|ATH3|Atoh3|MATH-3|bHLHa4 HGNC:13802|MIM:611635|Ensembl:ENSG00000123307|HPRD:14826|Vega:OTTHUMG00000169826 12 12q13.2 neuronal differentiation 4 protein-coding NEUROD4 neuronal differentiation 4 O class A basic helix-loop-helix protein 4|neurogenic differentiation 4|neurogenic differentiation factor 4|protein atonal homolog 3 20121230 -9606 58160 NFE4 - NF-E4 MIM:612133 7 7q22.1 transcription factor NF-E4 protein-coding - - - fetal globin activator NF-E4|gamma-globin gene activator 20121230 -9606 58163 RBPJP4 - K7|RBPSUHP4 HGNC:13687 9 9q13 RBPJ pseudogene 4 pseudo RBPJP4 RBPJ pseudogene 4 O - 20120720 -9606 58164 RBPJP3 - K2|RBPSUHP3 HGNC:13686 9 9p13 RBPJ pseudogene 3 pseudo RBPJP3 RBPJ pseudogene 3 O - 20121209 -9606 58189 WFDC1 - PS20 HGNC:15466|MIM:605322|Ensembl:ENSG00000103175|HPRD:05614|Vega:OTTHUMG00000137641 16 16q24.3 WAP four-disulfide core domain 1 protein-coding WFDC1 WAP four-disulfide core domain 1 O WAP four-disulfide core domain 1 homolog|WAP four-disulfide core domain protein 1|prostate stromal protein ps20|ps20 growth inhibitor 20121230 -9606 58190 CTDSP1 - NIF3|NLI-IF|NLIIF|SCP1 HGNC:21614|MIM:605323|Ensembl:ENSG00000144579|HPRD:05615|Vega:OTTHUMG00000133109 2 2q35 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein-coding CTDSP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 O NLI-interacting factor 3|carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1|nuclear LIM interactor-interacting factor 3|small C-terminal domain phosphatase 1 20121230 -9606 58191 CXCL16 UNQ2759/PRO6714 CXCLG16|SR-PSOX|SRPSOX HGNC:16642|MIM:605398|Ensembl:ENSG00000161921|HPRD:16103|Vega:OTTHUMG00000090761 17 17p13 chemokine (C-X-C motif) ligand 16 protein-coding CXCL16 chemokine (C-X-C motif) ligand 16 O C-X-C motif chemokine 16|CXC chemokine ligand 16|scavenger receptor for phosphatidylserine and oxidized low density lipoprotein|small-inducible cytokine B16|transmembrane chemokine CXCL16 20121230 -9606 58472 SQRDL CGI-44 PRO1975 HGNC:20390|Ensembl:ENSG00000137767|HPRD:18102|Vega:OTTHUMG00000131476 15 15q15 sulfide quinone reductase-like (yeast) protein-coding SQRDL sulfide quinone reductase-like (yeast) O sulfide dehydrogenase like|sulfide:quinone oxidoreductase, mitochondrial 20121230 -9606 58473 PLEKHB1 - KPL1|PHR1|PHRET1 HGNC:19079|MIM:607651|Ensembl:ENSG00000021300|HPRD:09630|Vega:OTTHUMG00000168030 11 11q13.5-q14.1 pleckstrin homology domain containing, family B (evectins) member 1 protein-coding PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 O PH domain containing protein in retina 1|PH domain containing, retinal 1|PH domain-containing family B member 1|PH domain-containing protein in retina 1|evectin-1|pleckstrin homology domain retinal protein 1|pleckstrin homology domain-containing family B member 1 20121230 -9606 58475 MS4A7 - 4SPAN2|CD20L4|CFFM4|MS4A8 HGNC:13378|MIM:606502|Ensembl:ENSG00000166927|HPRD:07579|Vega:OTTHUMG00000167356 11 11q12 membrane-spanning 4-domains, subfamily A, member 7 protein-coding MS4A7 membrane-spanning 4-domains, subfamily A, member 7 O CD20 antigen-like 4|CD20/Fc-epsilon-RI-beta family member 4|four-span transmembrane protein 2|high affinity immunoglobulin epsilon receptor beta subunit|membrane-spanning 4-domains subfamily A member 7 20121230 -9606 58476 TP53INP2 RP5-1181N3.1 C20orf110|DOR|PINH|dJ1181N3.1 HGNC:16104|Ensembl:ENSG00000078804|HPRD:15546|Vega:OTTHUMG00000032310 20 20q11.22 tumor protein p53 inducible nuclear protein 2 protein-coding TP53INP2 tumor protein p53 inducible nuclear protein 2 O PIG-U|diabetes and obesity regulated|diabetes and obesity-regulated|p53-inducible protein U|tumor protein p53-inducible nuclear protein 2 20121230 -9606 58477 SRPRB PSEC0230 APMCF1 HGNC:24085|Ensembl:ENSG00000144867|HPRD:18105|Vega:OTTHUMG00000159753 3 3q22.1 signal recognition particle receptor, B subunit protein-coding SRPRB signal recognition particle receptor, B subunit O SR-beta|signal recognition particle receptor subunit beta|signal recognition particle receptor, beta subunit 20121230 -9606 58478 ENOPH1 MSTP145 E1|MASA|MST145 HGNC:24599|Ensembl:ENSG00000145293|HPRD:17467|Vega:OTTHUMG00000130295 4 4q21.22 enolase-phosphatase 1 protein-coding ENOPH1 enolase-phosphatase 1 O 2,3-diketo-5-methylthio-1-phosphopentane phosphatase|MASA homolog|acireductone synthase|enolase-phosphatase E1 20121230 -9606 58480 RHOU SB128 ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K HGNC:17794|MIM:606366|Ensembl:ENSG00000116574|HPRD:06965|Vega:OTTHUMG00000037919 1 1q42.11-q42.3 ras homolog family member U protein-coding RHOU ras homolog family member U O 2310026M05Rik|CDC42-like GTPase 1|GTP-binding protein SB128|GTP-binding protein like 1|Ryu GTPase|ras homolog gene family, member U|ras-like gene family member U|rho GTPase-like protein ARHU|rho-related GTP-binding protein RhoU|wnt-1 responsive Cdc42 homolog 1 20121230 -9606 58483 LINC00474 RP11-81L14.1 C9orf27|EST-YD1 HGNC:23367|HPRD:12951 9 9q31.3 long intergenic non-protein coding RNA 474 miscRNA LINC00474 long intergenic non-protein coding RNA 474 O - 20121230 -9606 58484 NLRC4 UNQ6189/PRO20215 CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|IPAF HGNC:16412|MIM:606831|Ensembl:ENSG00000091106|HPRD:06014|Vega:OTTHUMG00000152107 2 2p22-p21 NLR family, CARD domain containing 4 protein-coding NLRC4 NLR family, CARD domain containing 4 O CARD, LRR, and NACHT-containing protein|ICE-protease activating factor|NLR family CARD domain-containing protein 4|NOD-like receptor C4|caspase recruitment domain family, member 12|caspase recruitment domain-containing protein 12|ice protease-activating factor|nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 4 20121230 -9606 58485 TRAPPC1 - BET5|MUM2 HGNC:19894|MIM:610969|Ensembl:ENSG00000170043|HPRD:18219|Vega:OTTHUMG00000108171 17 17p13.1 trafficking protein particle complex 1 protein-coding TRAPPC1 trafficking protein particle complex 1 O BET5 homolog|MUM-2|melanoma ubiquitous mutated 2|multiple myeloma protein 2|trafficking protein particle complex subunit 1 20121230 -9606 58486 ZBED5 - Buster1 HGNC:30803|Ensembl:ENSG00000236287|HPRD:17429|Vega:OTTHUMG00000150341 11 11p15.3 zinc finger, BED-type containing 5 protein-coding ZBED5 zinc finger, BED-type containing 5 O transposon-derived Buster1 transposase-like protein|zinc finger BED domain-containing protein 5 20121230 -9606 58487 CREBZF - SMILE|ZF HGNC:24905|MIM:606444|Ensembl:ENSG00000137504|HPRD:07340|Vega:OTTHUMG00000133648 11 11q14 CREB/ATF bZIP transcription factor protein-coding CREBZF CREB/ATF bZIP transcription factor O HCF-binding transcription factor Zhangfei|SHP-interacting leucine zipper protein|Zhangfei|host cell factor-binding transcription factor Zhangfei 20121230 -9606 58488 PCTP - PC-TP|STARD2 HGNC:8752|MIM:606055|Ensembl:ENSG00000141179|HPRD:06927|Vega:OTTHUMG00000177859 17 17q21-q24 phosphatidylcholine transfer protein protein-coding PCTP phosphatidylcholine transfer protein O START domain-containing protein 2|StAR-related lipid transfer (START) domain containing 2|stAR-related lipid transfer protein 2 20121230 -9606 58489 FAM108C1 - - HGNC:26925|Ensembl:ENSG00000136379|Vega:OTTHUMG00000172282 15 15q25.1 family with sequence similarity 108, member C1 protein-coding FAM108C1 family with sequence similarity 108, member C1 O abhydrolase domain-containing protein FAM108C1 20121230 -9606 58490 RPRD1B RP5-1057B20.2 C20orf77|CREPT|NET60|dJ1057B20.2 HGNC:16209|MIM:614694|Ensembl:ENSG00000101413|HPRD:08513|Vega:OTTHUMG00000032434 20 20q11.21-q12 regulation of nuclear pre-mRNA domain containing 1B protein-coding RPRD1B regulation of nuclear pre-mRNA domain containing 1B O cell cycle-related and expression-elevated protein in tumor|cell-cycle related and expression-elevated protein in tumor|regulation of nuclear pre-mRNA domain-containing protein 1B 20121230 -9606 58491 ZNF71 - EZFIT HGNC:13141|MIM:194545|Ensembl:ENSG00000197951|HPRD:11838 19 19q13.4 zinc finger protein 71 protein-coding ZNF71 zinc finger protein 71 O Kruppel-related zinc finger protein|endothelial zinc finger protein induced by tumor necrosis factor alpha 20121230 -9606 58492 ZNF77 - pT1 HGNC:13150|MIM:194551|Ensembl:ENSG00000175691|HPRD:08936|Vega:OTTHUMG00000180566 19 19p13.3 zinc finger protein 77 protein-coding ZNF77 zinc finger protein 77 O ZNFpT1 20121230 -9606 58493 INIP RP11-276E15.2 C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 HGNC:24994|MIM:613273|Ensembl:ENSG00000148153|HPRD:12980|Vega:OTTHUMG00000020509 9 9q32 INTS3 and NABP interacting protein protein-coding INIP INTS3 and NABP interacting protein O INTS3- and NABP-interacting protein|SOSS complex subunit C|SOSS-C|SSB-interacting protein 1|hSSB-interacting protein 1|minute INTS3/hSSB-associated element|sensor of single-strand DNA complex subunit C|sensor of ssDNA subunit C|single-stranded DNA-binding protein-interacting protein 1 20121230 -9606 58494 JAM2 UNQ219/PRO245 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM HGNC:14686|MIM:606870|Ensembl:ENSG00000154721|HPRD:06041|Vega:OTTHUMG00000078441 21 21q21.2 junctional adhesion molecule 2 protein-coding JAM2 junctional adhesion molecule 2 O JAM-2|JAM-IT/VE-JAM|junctional adhesion molecule B|vascular endothelial junction-associated molecule 20121230 -9606 58495 OVOL2 - EUROIMAGE566589|ZNF339 HGNC:15804|Ensembl:ENSG00000125850|HPRD:15780|Vega:OTTHUMG00000031960 20 20pter-q11.23 ovo-like 2 (Drosophila) protein-coding OVOL2 ovo-like 2 (Drosophila) O hOvo2|transcription factor Ovo-like 2|zinc finger protein 339 20121230 -9606 58496 LY6G5B DADB-127H9.9 C6orf19|G5b HGNC:13931|MIM:610433|Ensembl:ENSG00000240053|Ensembl:ENSG00000263020|HPRD:10063|Vega:OTTHUMG00000031056|Vega:OTTHUMG00000031227 6 6p21.3 lymphocyte antigen 6 complex, locus G5B protein-coding LY6G5B lymphocyte antigen 6 complex, locus G5B O lymphocyte antigen 6 complex locus protein G5b|lymphocyte antigen-6 G5B 20121230 -9606 58497 PRUNE RP11-316M1.6 DRES-17|DRES17|HTCD37 HGNC:13420|Ensembl:ENSG00000143363|HPRD:15188|Vega:OTTHUMG00000035062 1 1q21 prune homolog (Drosophila) protein-coding PRUNE prune homolog (Drosophila) O Drosophila-related expressed sequence 17|protein prune homolog 20121230 -9606 58498 MYL7 - MYL2A|MYLC2A HGNC:21719|MIM:613993|Ensembl:ENSG00000106631|HPRD:10105|Vega:OTTHUMG00000023125 7 7p21-p11.2 myosin, light chain 7, regulatory protein-coding MYL7 myosin, light chain 7, regulatory O MLC-2a|MLC2a|myosin light chain 2a|myosin regulatory light chain 2, atrial isoform|myosin regulatory light chain 7|myosin, light polypeptide 7, regulatory 20121230 -9606 58499 ZNF462 RP11-508N12.1 Zfp462 HGNC:21684|Ensembl:ENSG00000148143|HPRD:10333|Vega:OTTHUMG00000020438 9 9q31.2 zinc finger protein 462 protein-coding ZNF462 zinc finger protein 462 O - 20121230 -9606 58500 ZNF250 - ZFP647|ZNF647 HGNC:13044|Ensembl:ENSG00000196150|HPRD:15758|Vega:OTTHUMG00000165252 8 8q24.3 zinc finger protein 250 protein-coding ZNF250 zinc finger protein 250 O zinc finger protein (clone 647)|zinc finger protein 647 20121230 -9606 58503 PROL1 - BPLP|PRL1|opiorphin HGNC:17279|MIM:608936|Ensembl:ENSG00000171199|HPRD:16408|Vega:OTTHUMG00000160845 4 4q13.3 proline rich, lacrimal 1 protein-coding PROL1 proline rich, lacrimal 1 O basic proline-rich lacrimal protein|basic proline-rich protein|proline-rich 1|proline-rich protein 1 20121230 -9606 58504 ARHGAP22 - RhoGAP2|RhoGap22 HGNC:30320|MIM:610585|Ensembl:ENSG00000128805|HPRD:12476|Vega:OTTHUMG00000018176 10 10q11.22 Rho GTPase activating protein 22 protein-coding ARHGAP22 Rho GTPase activating protein 22 O rho GTPase-activating protein 22|rho-type GTPase-activating protein 22 20121230 -9606 58505 OSTC DC2 - HGNC:24448|Ensembl:ENSG00000198856|HPRD:13120|Vega:OTTHUMG00000161031 4 4q25 oligosaccharyltransferase complex subunit protein-coding OSTC oligosaccharyltransferase complex subunit O hydrophobic protein HSF-28|oligosaccharyltransferase complex subunit OSTC 20121230 -9606 58506 SCAF1 - SRA1 HGNC:30403|Ensembl:ENSG00000126461|HPRD:11604 19 19q13.3-q13.4 SR-related CTD-associated factor 1 protein-coding SCAF1 SR-related CTD-associated factor 1 O SCAF|SR-related and CTD-associated factor 1|SR-related-CTD-associated factor|serine arginine-rich pre-mRNA splicing factor SR-A1|splicing factor, arginine/serine-rich 19 20121230 -9606 58508 MLL3 - HALR|KMT2C HGNC:13726|MIM:606833|Ensembl:ENSG00000055609|HPRD:06016|Vega:OTTHUMG00000150553 7 7q36.1 myeloid/lymphoid or mixed-lineage leukemia 3 protein-coding MLL3 myeloid/lymphoid or mixed-lineage leukemia 3 O ALR-like protein|histone-lysine N-methyltransferase MLL3|histone-lysine N-methyltransferase, H3 lysine-4 specific|homologous to ALR protein|lysine N-methyltransferase 2C|myeloid/lymphoid or mixed-lineage leukemia protein 3 20121230 -9606 58509 CACTIN - C19orf29|NY-REN-24|fSAPc HGNC:29938|Ensembl:ENSG00000105298|Vega:OTTHUMG00000180808 19 19p13.3 cactin, spliceosome C complex subunit protein-coding CACTIN cactin, spliceosome C complex subunit O NY REN 24 antigen|NY-REN-24 antigen|cactin|cactin homolog|functional spliceosome-associated protein c|renal carcinoma antigen NY-REN-24 20121230 -9606 58510 PRODH2 - HSPOX1 HGNC:17325|Ensembl:ENSG00000250799|HPRD:17911|Vega:OTTHUMG00000180688 19 19q13.1 proline dehydrogenase (oxidase) 2 protein-coding PRODH2 proline dehydrogenase (oxidase) 2 O kidney and liver proline oxidase 1|probable proline dehydrogenase 2|probable proline oxidase 2 20121230 -9606 58511 DNASE2B - DLAD HGNC:28875|MIM:608057|Ensembl:ENSG00000137976|HPRD:09728|Vega:OTTHUMG00000009860 1 1p22.3 deoxyribonuclease II beta protein-coding DNASE2B deoxyribonuclease II beta O DNase II beta|DNase II-like acid DNase|DNase2-like acid DNase|deoxyribonuclease-2-beta|endonuclease DLAD|lysosomal DNase II 20121230 -9606 58512 DLGAP3 - DAP3|SAPAP3 HGNC:30368|MIM:611413|Ensembl:ENSG00000116544|Vega:OTTHUMG00000004049 1 1p35.3-p34.1 discs, large (Drosophila) homolog-associated protein 3 protein-coding DLGAP3 discs, large (Drosophila) homolog-associated protein 3 O DAP-3|PSD-95/SAP90-binding protein 3|SAP90/PSD 95 associated protein 3|SAP90/PSD-95-associated protein 3|disks large-associated protein 3 20121230 -9606 58513 EPS15L1 - EPS15R HGNC:24634|Ensembl:ENSG00000127527|HPRD:09445|Vega:OTTHUMG00000182361 19 19p13.11 epidermal growth factor receptor pathway substrate 15-like 1 protein-coding EPS15L1 epidermal growth factor receptor pathway substrate 15-like 1 O epidermal growth factor receptor substrate 15-like 1|epidermal growth factor receptor substrate EPS15R|eps15-related protein 20121230 -9606 58515 SELK HSPC030 HSPC297 MIM:607916|Ensembl:ENSG00000113811|HPRD:07448|Vega:OTTHUMG00000158656 3 3p21.31 selenoprotein K protein-coding - - - - 20121230 -9606 58516 FAM60A L4 C12orf14|TERA HGNC:30702|Ensembl:ENSG00000139146|HPRD:16588|Vega:OTTHUMG00000168586 12 12p11 family with sequence similarity 60, member A protein-coding FAM60A family with sequence similarity 60, member A O protein FAM60A|tera protein homolog 20121230 -9606 58517 RBM25 - NET52|RED120|RNPC7|S164|Snu71|fSAP94 HGNC:23244|MIM:612427|Ensembl:ENSG00000119707|HPRD:15229|Vega:OTTHUMG00000167540 14 14q24.3 RNA binding motif protein 25 protein-coding RBM25 RNA binding motif protein 25 O Arg/Glu/Asp-rich protein, 120 kDa|RNA-binding motif protein 25|RNA-binding protein 25|RNA-binding region (RNP1, RRM) containing 7|RNA-binding region-containing protein 7|U1 small nuclear ribonucleoprotein 1SNRP homolog|arg/Glu/Asp-rich protein of 120 kDa|functional spliceosome-associated protein 94 20121230 -9606 58524 DMRT3 RP11-143M15.2 DMRTA3 HGNC:13909|MIM:614754|Ensembl:ENSG00000064218|HPRD:16827|Vega:OTTHUMG00000019436 9 9p24.3 doublesex and mab-3 related transcription factor 3 protein-coding DMRT3 doublesex and mab-3 related transcription factor 3 O DMRT-like family A3|doublesex- and mab-3-related transcription factor 3|testis-specific protein 20121230 -9606 58525 WIZ - ZNF803 HGNC:30917|Ensembl:ENSG00000011451 19 19p13.1 widely interspaced zinc finger motifs protein-coding WIZ widely interspaced zinc finger motifs O WIZ zinc finger|protein Wiz|widely-interspaced zinc finger motifs|widely-interspaced zinc finger-containing protein|zinc finger protein 803 20121230 -9606 58526 MID1IP1 - G12-like|MIG12|S14R|STRAIT11499|THRSPL HGNC:20715|Ensembl:ENSG00000165175|HPRD:06732|Vega:OTTHUMG00000024092 X Xp11.4 MID1 interacting protein 1 protein-coding MID1IP1 MID1 interacting protein 1 O MID1 interacting G12-like protein|MID1 interacting protein 1 (gastrulation specific G12-like)|gastrulation specific G12 homolog|gastrulation-specific G12-like protein|mid1-interacting G12-like protein|mid1-interacting protein 1|spot 14-R|spot 14-related protein 20121230 -9606 58527 ABRACL RP11-501K14.2 C6orf115|Costars|HSPC280|PRO2013 HGNC:21230|Ensembl:ENSG00000146386|Vega:OTTHUMG00000015684 6 6q24.1 ABRA C-terminal like protein-coding ABRACL ABRA C-terminal like O ABRA C-terminal-like protein|costars family protein ABRACL 20121230 -9606 58528 RRAGD - RAGD|bA11D8.2.1 HGNC:19903|MIM:608268|Ensembl:ENSG00000025039|HPRD:12199|Vega:OTTHUMG00000015200 6 6q15-q16 Ras-related GTP binding D protein-coding RRAGD Ras-related GTP binding D O Rag D protein|ras-related GTP-binding protein D 20121230 -9606 58529 MYOZ1 - CS-2|FATZ|MYOZ HGNC:13752|MIM:605603|Ensembl:ENSG00000177791|HPRD:05725|Vega:OTTHUMG00000018466 10 10q22.1 myozenin 1 protein-coding MYOZ1 myozenin 1 O calsarcin-2|filamin-, actinin- and telethonin-binding protein|myozenin-1 20121230 -9606 58530 LY6G6D DADB-110M10.6 C6orf23|G6D|LY6-D|MEGT1|NG25 HGNC:13935|MIM:606038|Ensembl:ENSG00000244355|HPRD:16192|Vega:OTTHUMG00000137370 6 6p21.3 lymphocyte antigen 6 complex, locus G6D protein-coding LY6G6D lymphocyte antigen 6 complex, locus G6D O lymphocyte antigen 6 complex locus protein G6d|lymphocyte antigen-6 G6D|megakaryocyte-enhanced gene transcript 1 protein|protein Ly6-D 20121230 -9606 58531 PRM3 - - HGNC:13732|Ensembl:ENSG00000178257|HPRD:17909|Vega:OTTHUMG00000172316 16 16p13.3 protamine 3 protein-coding PRM3 protamine 3 O gene 4|protamine-3|sperm protamine P3 20121230 -9606 58533 SNX6 - MSTP010|TFAF2 HGNC:14970|MIM:606098|Ensembl:ENSG00000129515|HPRD:12086|Vega:OTTHUMG00000140213 14 14q13.1 sorting nexin 6 protein-coding SNX6 sorting nexin 6 O TRAF4-associated factor 2|sorting nexin-6|tumor necrosis factor receptor-associated factor 4(TRAF4)-associated factor 2 20121230 -9606 58538 MPP4 - ALS2CR5|DLG6 HGNC:13680|MIM:606575|Ensembl:ENSG00000082126|HPRD:07360|Vega:OTTHUMG00000154525 2 2q33.2 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) protein-coding MPP4 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) O MAGUK p55 subfamily member 4|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein|discs large homolog 6|discs, large homolog 6 20121230 -9606 58985 IL22RA1 - CRF2-9|IL22R|IL22R1 HGNC:13700|MIM:605457|Ensembl:ENSG00000142677|HPRD:16108|Vega:OTTHUMG00000003041 1 1p36.11 interleukin 22 receptor, alpha 1 protein-coding IL22RA1 interleukin 22 receptor, alpha 1 O IL-22 receptor subunit alpha-1|IL-22R-alpha-1|IL-22RA1|cytokine receptor class-II member 9|cytokine receptor family 2 member 9|interleukin-22 receptor subunit alpha-1|zcytoR11 20121230 -9606 58986 TMEM8A - M83|TMEM6|TMEM8 HGNC:17205|Ensembl:ENSG00000129925|HPRD:11636|Vega:OTTHUMG00000047996 16 16p13.3 transmembrane protein 8A protein-coding TMEM8A transmembrane protein 8A O five-span transmembrane protein M83|transmembrane protein 6|transmembrane protein 8 (five membrane-spanning domains) 20121230 -9606 59067 IL21 - IL-21|Za11 HGNC:6005|MIM:605384|Ensembl:ENSG00000138684|HPRD:05650|Vega:OTTHUMG00000133073 4 4q26-q27 interleukin 21 protein-coding IL21 interleukin 21 O interleukin-21|interleukin-21 isoform 20121230 -9606 59081 MNG2 - - MIM:300273 X Xp22 multinodular goiter 2 unknown - - - - 20120622 -9606 59082 CARD18 UNQ5804/PRO19611 ICEBERG|UNQ5804|pseudo-ICE HGNC:28861|MIM:605354|Ensembl:ENSG00000255501|HPRD:16099|Vega:OTTHUMG00000166165 11 11q22.3 caspase recruitment domain family, member 18 protein-coding CARD18 caspase recruitment domain family, member 18 O ICEBERG caspase-1 inhibitor|caspase recruitment domain-containing protein 18|caspase-1 inhibitor Iceberg 20121230 -9606 59084 ENPP5 UNQ550/PRO1107 - HGNC:13717|Ensembl:ENSG00000112796|HPRD:13272|Vega:OTTHUMG00000014781 6 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) protein-coding ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) O E-NPP 5|NPP-5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function)|ectonucleotide pyrophosphatase/phosphodiesterase family member 5 20121230 -9606 59269 HIVEP3 - KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C HGNC:13561|MIM:606649|Ensembl:ENSG00000127124|HPRD:09442|Vega:OTTHUMG00000006361 1 1p34 human immunodeficiency virus type I enhancer binding protein 3 protein-coding HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 O ZAS family, member 3|kappa-B and V(D)J recombination signal sequences-binding protein|kappa-binding protein 1|transcription factor HIVEP3|zinc finger protein ZAS3 20121230 -9606 59271 EVA1C PRED34 B18|B19|C21orf63|C21orf64|FAM176C|SUE21 HGNC:13239|Ensembl:ENSG00000166979|HPRD:10760|Vega:OTTHUMG00000064922 21 21q22.11 eva-1 homolog C (C. elegans) protein-coding EVA1C eva-1 homolog C (C. elegans) O family with sequence similarity 176, member C|protein FAM176C 20121230 -9606 59272 ACE2 UNQ868/PRO1885 ACEH HGNC:13557|MIM:300335|Ensembl:ENSG00000130234|HPRD:02274|Vega:OTTHUMG00000021177 X Xp22 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 protein-coding ACE2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 O ACE-related carboxypeptidase|angiotensin I converting enzyme 2|angiotensin-converting enzyme 2|angiotensin-converting enzyme homolog|metalloprotease MPROT15 20121230 -9606 59274 MESDC1 - - HGNC:13519|Ensembl:ENSG00000140406|HPRD:11300|Vega:OTTHUMG00000144185 15 15q13 mesoderm development candidate 1 protein-coding MESDC1 mesoderm development candidate 1 O - 20121230 -9606 59277 NTN4 - PRO3091 HGNC:13658|MIM:610401|Ensembl:ENSG00000074527|HPRD:10121|Vega:OTTHUMG00000170290 12 12q22 netrin 4 protein-coding NTN4 netrin 4 O beta-netrin|hepar-derived netrin-like protein|netrin-4 20121230 -9606 59283 CACNG8 - - HGNC:13628|MIM:606900|Ensembl:ENSG00000142408|HPRD:06063|Vega:OTTHUMG00000064908 19 19q13.4 calcium channel, voltage-dependent, gamma subunit 8 protein-coding CACNG8 calcium channel, voltage-dependent, gamma subunit 8 O TARP gamma-8|neuronal voltage-gated calcium channel gamma-8 subunit|transmembrane AMPAR regulatory protein gamma-8|voltage-dependent calcium channel gamma-8 subunit 20121230 -9606 59284 CACNG7 - - HGNC:13626|MIM:606899|Ensembl:ENSG00000105605|HPRD:06062|Vega:OTTHUMG00000064852 19 19q13.4 calcium channel, voltage-dependent, gamma subunit 7 protein-coding CACNG7 calcium channel, voltage-dependent, gamma subunit 7 O TARP gamma-7|neuronal voltage-gated calcium channel gamma-7 subunit|transmembrane AMPAR regulatory protein gamma-7|voltage-dependent calcium channel gamma-7 subunit 20121230 -9606 59285 CACNG6 - - HGNC:13625|MIM:606898|Ensembl:ENSG00000130433|HPRD:06061|Vega:OTTHUMG00000064907 19 19q13.4 calcium channel, voltage-dependent, gamma subunit 6 protein-coding CACNG6 calcium channel, voltage-dependent, gamma subunit 6 O neuronal voltage-gated calcium channel gamma-6 subunit|voltage-dependent calcium channel gamma-6 subunit 20121230 -9606 59286 UBL5 - HUB1 HGNC:13736|MIM:606849|Ensembl:ENSG00000198258|HPRD:06028|Vega:OTTHUMG00000180214 19 19p13.3 ubiquitin-like 5 protein-coding UBL5 ubiquitin-like 5 O beacon|ubiquitin-like protein 5 20121230 -9606 59307 SIGIRR UNQ301/PRO342 TIR8 HGNC:30575|MIM:605478|Ensembl:ENSG00000185187|HPRD:12018|Vega:OTTHUMG00000165412 11 11p15.5 single immunoglobulin and toll-interleukin 1 receptor (TIR) domain protein-coding SIGIRR single immunoglobulin and toll-interleukin 1 receptor (TIR) domain O single Ig IL-1-related receptor|single Ig IL-1R-related molecule|single immunoglobulin domain IL1R1 related|single immunoglobulin domain-containing IL1R-related protein|toll/interleukin-1 receptor 8 20121230 -9606 59330 GER - - MIM:109350 13 13q14 Gastroesophageal reflux unknown - - - - 20120622 -9606 59331 RFH1 - AORF MIM:161900 1 1q21 Renal failure, progressive, with hypertension unknown - - - - 20120622 -9606 59332 VSPA - - MIM:313000 X Xp22.33 Visuospatial/perceptual abilities unknown - - - - 20120622 -9606 59333 NMSR - HMSNR MIM:605285 10 10q23.2 Neuropathy, hereditary motor and sensory, Russe type unknown - - - - 20120622 -9606 59335 PRDM12 RP11-57C19.7 PFM9 HGNC:13997|Ensembl:ENSG00000130711|HPRD:17900|Vega:OTTHUMG00000020808 9 9q33-q34 PR domain containing 12 protein-coding PRDM12 PR domain containing 12 O PR domain zinc finger protein 12|PR domain-containing protein 12|PR-domain containing protein 12|PR-domain zinc finger protein 12 20121230 -9606 59336 PRDM13 RP4-626B19.1 MU-MB-20.220|PFM10 HGNC:13998|Ensembl:ENSG00000112238|HPRD:17901|Vega:OTTHUMG00000015269 6 6q16.2 PR domain containing 13 protein-coding PRDM13 PR domain containing 13 O PR domain zinc finger protein 13|PR domain-containing protein 13|PR-domain containing protein 13|PR-domain zinc finger protein 13 20121230 -9606 59338 PLEKHA1 RP11-436O19__A.1 TAPP1 HGNC:14335|MIM:607772|Ensembl:ENSG00000107679|HPRD:09686|Vega:OTTHUMG00000019184 10 10q26.13 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 protein-coding PLEKHA1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 O pleckstrin homology domain-containing family A member 1|tandem PH domain-containing protein 1 20121230 -9606 59339 PLEKHA2 - TAPP2 HGNC:14336|MIM:607773|Ensembl:ENSG00000169499 8 8p11.22 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding PLEKHA2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 O PH domain-containing family A member 2|TAPP-2|pleckstrin homology domain-containing family A member 2|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2|tandem PH Domain containing protein-2|tandem PH domain-containing protein 2 20121230 -9606 59340 HRH4 - AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R HGNC:17383|MIM:606792|Ensembl:ENSG00000134489|HPRD:06004|Vega:OTTHUMG00000131945 18 18q11.2 histamine receptor H4 protein-coding HRH4 histamine receptor H4 O G-protein coupled receptor 105|SP9144|histamine H4 receptor|pfi-013 20121230 -9606 59341 TRPV4 - CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC HGNC:18083|MIM:605427|Ensembl:ENSG00000111199|HPRD:05667|Vega:OTTHUMG00000169277 12 12q24.1 transient receptor potential cation channel, subfamily V, member 4 protein-coding TRPV4 transient receptor potential cation channel, subfamily V, member 4 O OSM9-like transient receptor potential channel 4|osm-9-like TRP channel 4|osmosensitive transient receptor potential channel 4|transient receptor potential cation channel subfamily V member 4|transient receptor potential protein 12|vanilloid receptor-like channel 2|vanilloid receptor-related osmotically activated channel 20121230 -9606 59342 SCPEP1 MSTP034 HSCP1|RISC HGNC:29507|Ensembl:ENSG00000121064|HPRD:10194|Vega:OTTHUMG00000178129 17 17q22 serine carboxypeptidase 1 protein-coding SCPEP1 serine carboxypeptidase 1 O retinoid inducible serine carboxypeptidase|retinoid-inducible serine carboxypeptidase|serine carboxypeptidase 1 precursor protein 20121230 -9606 59343 SENP2 - AXAM2|SMT3IP2 HGNC:23116|MIM:608261|Ensembl:ENSG00000163904|HPRD:07002|Vega:OTTHUMG00000156658 3 3q27.2 SUMO1/sentrin/SMT3 specific peptidase 2 protein-coding SENP2 SUMO1/sentrin/SMT3 specific peptidase 2 O SMT3-specific isopeptidase 2|SUMO1/sentrin/SMT3 specific protease 2|sentrin-specific protease 2|sentrin/SUMO-specific protease SENP2 20121230 -9606 59344 ALOXE3 - E-LOX|eLOX3 HGNC:13743|MIM:607206|Ensembl:ENSG00000179148|HPRD:06231|Vega:OTTHUMG00000108179 17 17p13.1 arachidonate lipoxygenase 3 protein-coding ALOXE3 arachidonate lipoxygenase 3 O e-LOX-3|epidermal lipoxygenase|epidermis-type lipoxygenase 3 20121230 -9606 59345 GNB4 - - HGNC:20731|MIM:610863|Ensembl:ENSG00000114450|HPRD:09973|Vega:OTTHUMG00000157440 3 3q26.33 guanine nucleotide binding protein (G protein), beta polypeptide 4 protein-coding GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 O G protein beta-4 subunit|guanine nucleotide binding protein beta subunit 4|guanine nucleotide-binding protein subunit beta-4|transducin beta chain 4 20121230 -9606 59347 FKSG2 FKSG2 - HPRD:16902 8 8p11.2 tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 59348 ZNF350 - ZBRK1|ZFQR HGNC:16656|MIM:605422|Ensembl:ENSG00000256683|HPRD:05663 19 19q13.41 zinc finger protein 350 protein-coding ZNF350 zinc finger protein 350 O KRAB zinc finger protein ZFQR|zinc finger and BRCA1-interacting protein with a KRAB domain 1|zinc finger protein ZBRK1|zinc-finger protein ZBRK1 20121230 -9606 59349 KLHL12 - C3IP1|DKIR|hDKIR HGNC:19360|MIM:614522|Ensembl:ENSG00000117153|HPRD:13925|Vega:OTTHUMG00000041385 1 1q32.1 kelch-like 12 (Drosophila) protein-coding KLHL12 kelch-like 12 (Drosophila) O CUL3-interacting protein 1|DKIR homolog|kelch-like protein 12|kelch-like protein C3IP1 20121230 -9606 59350 RXFP1 - LGR7|RXFPR1 HGNC:19718|MIM:606654|Ensembl:ENSG00000171509|HPRD:05975|Vega:OTTHUMG00000149973 4 4q32.1 relaxin/insulin-like family peptide receptor 1 protein-coding RXFP1 relaxin/insulin-like family peptide receptor 1 O leucine-rich repeat-containing G protein-coupled receptor 7|relaxin receptor 1 20121230 -9606 59351 PBOV1 - UC28|UROC28|dJ171N11.2 HGNC:21079|MIM:605669|Ensembl:ENSG00000254440|HPRD:16137|Vega:OTTHUMG00000167040 6 6q23.3 prostate and breast cancer overexpressed 1 protein-coding PBOV1 prostate and breast cancer overexpressed 1 O prostate and breast cancer overexpressed gene 1 protein 20121230 -9606 59352 LGR6 RP11-572A16.3 GPCR|VTS20631 HGNC:19719|MIM:606653|Ensembl:ENSG00000133067|HPRD:05974|Vega:OTTHUMG00000041383 1 1q32.1 leucine-rich repeat containing G protein-coupled receptor 6 protein-coding LGR6 leucine-rich repeat containing G protein-coupled receptor 6 O gonadotropin receptor|leucine-rich repeat-containing G protein-coupled receptor 6|leucine-rich repeat-containing G-protein coupled receptor 6 20121230 -9606 59353 TMEM35 RP4-664K17.3 - HGNC:25864|Ensembl:ENSG00000126950|HPRD:06523|Vega:OTTHUMG00000022016 X Xq22.1 transmembrane protein 35 protein-coding TMEM35 transmembrane protein 35 O - 20121230 -9606 60312 AFAP1 - AFAP|AFAP-110|AFAP110 HGNC:24017|MIM:608252|Ensembl:ENSG00000196526|HPRD:09747|Vega:OTTHUMG00000125515 4 4p16 actin filament associated protein 1 protein-coding AFAP1 actin filament associated protein 1 O 110 kDa actin filament-associated protein|actin filament-associated protein 1|actin filament-associated protein, 110 kDa 20121230 -9606 60313 GPBP1L1 SP192 RP11-767N6.1 HGNC:28843|Ensembl:ENSG00000159592|HPRD:15418|Vega:OTTHUMG00000040990 1 1p34.1 GC-rich promoter binding protein 1-like 1 protein-coding GPBP1L1 GC-rich promoter binding protein 1-like 1 O GC-rich promoter-binding protein 1-like 1|vasculin-like protein 1 20121230 -9606 60314 C12orf10 - MST024|MSTP024|MYG|MYG1 HGNC:17590|MIM:611366|Ensembl:ENSG00000139637|HPRD:10705|Vega:OTTHUMG00000170030 12 12q13 chromosome 12 open reading frame 10 protein-coding C12orf10 chromosome 12 open reading frame 10 O UPF0160 protein MYG1, mitochondrial|melanocyte related 20121230 -9606 60343 FAM3A XX-FW89031B12.3 2.19|DLD|DXS560S|XAP-7 HGNC:13749|MIM:300492|Ensembl:ENSG00000071889|HPRD:06505|Vega:OTTHUMG00000013418 X Xq28 family with sequence similarity 3, member A protein-coding FAM3A family with sequence similarity 3, member A O cytokine-like protein 2-19|protein FAM3A 20121230 -9606 60358 ERVK-5 - ERVK5|HERV-K(II)|HERV-KII HGNC:13757|MIM:614012 3 3q12.3 endogenous retrovirus group K, member 5 unknown ERVK-5 endogenous retrovirus group K, member 5 O - 20121211 -9606 60359 ERVK-4 - ERVK4|HERV-K(I)|HERV-KI HGNC:13756|MIM:614011 3 3q21.2 endogenous retrovirus group K, member 4 unknown ERVK-4 endogenous retrovirus group K, member 4 O - 20121017 -9606 60370 AVPI1 NPD013 PP5395|RP11-548K23.7|VIP32|VIT32 HGNC:30898|Ensembl:ENSG00000119986|HPRD:16530|Vega:OTTHUMG00000018864 10 10q24.2 arginine vasopressin-induced 1 protein-coding AVPI1 arginine vasopressin-induced 1 O AVP-induced protein 1|arginine vasopressin-induced protein 1|vasopressin-induced transcript 20121230 -9606 60385 TSKS - STK22S1|TSKS1|TSSKS HGNC:30719|MIM:608253|Ensembl:ENSG00000126467|HPRD:09748 19 19q13.3 testis-specific serine kinase substrate protein-coding TSKS testis-specific serine kinase substrate O STK22 substrate 1|testis specific serine/threonine kinase substrate|testis-specific kinase substrate 20121230 -9606 60386 SLC25A19 - DNC|MCPHA|MUP1|THMD3|THMD4|TPC HGNC:14409|MIM:606521|Ensembl:ENSG00000125454|HPRD:08405|Vega:OTTHUMG00000179607 17 17q25.3 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 protein-coding SLC25A19 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 O microcephaly, Amish|mitochondrial thiamine pyrophosphate carrier|mitochondrial uncoupling protein 1|solute carrier family 25 (mitochondrial deoxynucleotide carrier), member 19 20121230 -9606 60401 EDA2R UNQ2448/PRO5727/PRO34080 EDA-A2R|EDAA2R|TNFRSF27|XEDAR HGNC:17756|MIM:300276|Ensembl:ENSG00000131080|HPRD:02230|Vega:OTTHUMG00000021736 X Xq12 ectodysplasin A2 receptor protein-coding EDA2R ectodysplasin A2 receptor O EDA-A2 receptor|X-linked ectodysplasin-A2 receptor|tumor necrosis factor receptor superfamily member 27|tumor necrosis factor receptor superfamily member XEDAR 20121230 -9606 60412 EXOC4 tcag7.1185 SEC8|SEC8L1|Sec8p HGNC:30389|MIM:608185|Ensembl:ENSG00000131558|HPRD:12185|Vega:OTTHUMG00000155259 7 7q31 exocyst complex component 4 protein-coding EXOC4 exocyst complex component 4 O SEC8-like 1|exocyst complex component Sec8 20121230 -9606 60436 TGIF2 - - HGNC:15764|MIM:607294|Ensembl:ENSG00000118707|HPRD:06293|Vega:OTTHUMG00000032382|Vega:OTTHUMG00000172332 20 20q11.23 TGFB-induced factor homeobox 2 protein-coding TGIF2 TGFB-induced factor homeobox 2 O 5'-TG-3' interacting factor 2|TGF(beta)-induced transcription factor 2|TGF-beta-induced transcription factor 2|TGFB-induced factor 2 (TALE family homeobox)|homeobox protein TGIF2|transcription growth factor-beta-induced factor 2 20121230 -9606 60437 CDH26 RP4-551D2.3 VR20 HGNC:15902|Ensembl:ENSG00000124215|HPRD:13020|Vega:OTTHUMG00000032874 20 20q13.33 cadherin 26 protein-coding CDH26 cadherin 26 O cadherin-like 26|cadherin-like protein 26|cadherin-like protein VR20 20121230 -9606 60439 TTTY2 - NCRNA00109|TTY2|lINC00109 HGNC:14023 Y Yp11.2 testis-specific transcript, Y-linked 2 (non-protein coding) miscRNA TTTY2 testis-specific transcript, Y-linked 2 (non-protein coding) O - 20121209 -9606 60454 PARK4 - - HGNC:13794|MIM:605543 4 4p15 Parkinson disease (autosomal dominant, Lewy body) 4 unknown PARK4 Parkinson disease (autosomal dominant, Lewy body) 4 O - 20110215 -9606 60467 BPESC1 - NCRNA00187 HGNC:13228|HPRD:16559 3 3q23 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) miscRNA BPESC1 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) O - 20121230 -9606 60468 BACH2 RP11-63K6.2 - HGNC:14078|MIM:605394|Ensembl:ENSG00000112182|HPRD:12012|Vega:OTTHUMG00000015216 6 6q15 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 O BTB and CNC homolog 2|transcription regulator protein BACH2 20121230 -9606 60481 ELOVL5 RP3-483K16.1 HELO1|dJ483K16.1 HGNC:21308|MIM:611805|Ensembl:ENSG00000012660|HPRD:13268|Vega:OTTHUMG00000016249 6 6p21.1-p12.1 ELOVL fatty acid elongase 5 protein-coding ELOVL5 ELOVL fatty acid elongase 5 O 3-keto acyl-CoA synthase ELOVL5|ELOVL FA elongase 5|ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)|elongation of very long chain fatty acids protein 5|fatty acid elongase 1|homolog of yeast long chain polyunsaturated fatty acid elongatio|homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2 20121230 -9606 60482 SLC5A7 - CHT|CHT1|hCHT HGNC:14025|MIM:608761|Ensembl:ENSG00000115665|HPRD:12294|Vega:OTTHUMG00000130959 2 2q12 solute carrier family 5 (choline transporter), member 7 protein-coding SLC5A7 solute carrier family 5 (choline transporter), member 7 O hemicholinium-3-sensitive choline transporter|high affinity choline transporter 1|high affinity choline transporter; hemicholinium-3-sensitive choline transporter|solute carrier family 5 member 7 20121230 -9606 60484 HAPLN2 RP11-284F21.6 BRAL1 HGNC:17410|Ensembl:ENSG00000132702|HPRD:17088|Vega:OTTHUMG00000033205 1 1q23.1 hyaluronan and proteoglycan link protein 2 protein-coding HAPLN2 hyaluronan and proteoglycan link protein 2 O brain link protein 1|brain link protein-1 20121230 -9606 60485 SAV1 - SAV|WW45|WWP4 HGNC:17795|MIM:607203|Ensembl:ENSG00000151748|HPRD:06229|Vega:OTTHUMG00000140293 14 14q13-q23 salvador homolog 1 (Drosophila) protein-coding SAV1 salvador homolog 1 (Drosophila) O 1700040G09Rik|45 kDa WW domain protein|WW domain-containing|hWW45|protein salvador homolog 1 20121230 -9606 60487 TRMT11 RP1-187J11.2 C6orf75|MDS024|TRM11|TRMT11-1 HGNC:21080|Ensembl:ENSG00000066651|HPRD:12898|Vega:OTTHUMG00000015515 6 6q11.1-q22.33 tRNA methyltransferase 11 homolog (S. cerevisiae) protein-coding TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) O tRNA (guanine(10)-N2)-methyltransferase homolog|tRNA guanosine-2'-O-methyltransferase TRM11 homolog 20121230 -9606 60488 MRPS35 HDCMD11P MDS023|MRP-S28|MRPS28 HGNC:16635|MIM:611995|Ensembl:ENSG00000061794|HPRD:11373|Vega:OTTHUMG00000169215 12 12p11 mitochondrial ribosomal protein S35 protein-coding MRPS35 mitochondrial ribosomal protein S35 O 28S ribosomal protein S28, mitochondrial|28S ribosomal protein S35, mitochondrial|MRP-S35|S28mt|S35mt|mitochondrial ribosomal protein S28 20121230 -9606 60489 APOBEC3G MDS019 ARCD|ARP-9|ARP9|CEM-15|CEM15|bK150C2.7|dJ494G10.1 HGNC:17357|MIM:607113|Ensembl:ENSG00000239713|HPRD:06172|Vega:OTTHUMG00000151081 22 22q13.1-q13.2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G protein-coding APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G O APOBEC-related cytidine deaminase|APOBEC-related protein 9|DNA dC->dU editing enzyme|DNA dC->dU-editing enzyme APOBEC-3G|apolipoprotein B mRNA editing enzyme cytidine deaminase|deoxycytidine deaminase|phorbolin-like protein MDS019 20121230 -9606 60490 PPCDC MDS018 - HGNC:28107|MIM:609854|Ensembl:ENSG00000138621|HPRD:14377|Vega:OTTHUMG00000142824 15 15q24.2 phosphopantothenoylcysteine decarboxylase protein-coding PPCDC phosphopantothenoylcysteine decarboxylase O PPC-DC|coaC 20121230 -9606 60491 NIF3L1 MDS015 ALS2CR1|CALS-7 HGNC:13390|MIM:605778|Ensembl:ENSG00000196290|HPRD:10424|Vega:OTTHUMG00000154588 2 2q33 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) protein-coding NIF3L1 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) O NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like 1|NIF3-like protein 1|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 1|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 1 protein 20121230 -9606 60492 CCDC90B CUA003 MDS011|MDS025 HGNC:28108|Ensembl:ENSG00000137500|HPRD:14378|Vega:OTTHUMG00000167078 11 11q14.1 coiled-coil domain containing 90B protein-coding CCDC90B coiled-coil domain containing 90B O coiled-coil domain-containing protein 90B, mitochondrial 20121230 -9606 60493 FASTKD5 - dJ1187M17.5 HGNC:25790|MIM:614272|Ensembl:ENSG00000215251|HPRD:07813|Vega:OTTHUMG00000031727 20 20p13 FAST kinase domains 5 protein-coding FASTKD5 FAST kinase domains 5 O FAST kinase domain-containing protein 5 20121230 -9606 60494 CCDC81 - - HGNC:26281|Ensembl:ENSG00000149201|HPRD:08032|Vega:OTTHUMG00000167213 11 11q14.2 coiled-coil domain containing 81 protein-coding CCDC81 coiled-coil domain containing 81 O coiled-coil domain-containing protein 81 20121230 -9606 60495 HPSE2 - HPA2|HPR2|UFS HGNC:18374|MIM:613469|Ensembl:ENSG00000172987|HPRD:13669|Vega:OTTHUMG00000018880 10 10q23-q24 heparanase 2 protein-coding HPSE2 heparanase 2 O heparanase 3|heparanase-like protein|inactive heparanase-2 20121230 -9606 60496 AASDHPPT CGI-80 AASD-PPT|LYS2|LYS5 HGNC:14235|MIM:607756|Ensembl:ENSG00000149313|HPRD:09675|Vega:OTTHUMG00000166253 11 11q22 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase protein-coding AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase O 4'-phosphopantetheinyl transferase|L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase|LYS5 ortholog|alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase 20121230 -9606 60498 IGAN - IGAN1 MIM:161950 6 6q22-q23 IgA nephropathy unknown - - - - 20120622 -9606 60500 BRCA3 - BRCAX HGNC:18617|MIM:605365 13 13q21 breast cancer 3 unknown BRCA3 breast cancer 3 O - 20120411 -9606 60502 CPAT1 - ACP HGNC:30998|MIM:605388 9 9p12-q12 cerebral palsy, ataxic 1 unknown CPAT1 cerebral palsy, ataxic 1 O - 20120622 -9606 60506 NYX - CLRP|CSNB1|CSNB1A|CSNB4|NBM1 HGNC:8082|MIM:300278|Ensembl:ENSG00000188937|HPRD:02232|Vega:OTTHUMG00000021370 X Xp11.4 nyctalopin protein-coding NYX nyctalopin O leucine-rich repeat protein 20121230 -9606 60509 AGBL5 - - HGNC:26147|Ensembl:ENSG00000084693|HPRD:07968|Vega:OTTHUMG00000128406 2 2p23.3 ATP/GTP binding protein-like 5 protein-coding AGBL5 ATP/GTP binding protein-like 5 O ATP/GTP-binding protein-like 5|cytosolic carboxypeptidase-like protein 5 20121230 -9606 60526 C2orf43 - - HGNC:26145|MIM:613570|Ensembl:ENSG00000118961|HPRD:07113|Vega:OTTHUMG00000122097 2 2p24.1 chromosome 2 open reading frame 43 protein-coding C2orf43 chromosome 2 open reading frame 43 O UPF0554 protein C2orf43 20121230 -9606 60528 ELAC2 - ELC2|HPC2 HGNC:14198|MIM:605367|Ensembl:ENSG00000006744|HPRD:05641|Vega:OTTHUMG00000058764 17 17p11.2 elaC homolog 2 (E. coli) protein-coding ELAC2 elaC homolog 2 (E. coli) O RNase Z 2|elaC homolog protein 2|heredity prostate cancer protein 2|putative prostate cancer susceptibility protein HPC2/ELAC2|ribonuclease Z 2|tRNA 3 endonuclease 2|tRNase Z (long form)|tRNase Z 2|zinc phosphodiesterase ELAC protein 2 20121230 -9606 60529 ALX4 - FND2 HGNC:450|MIM:605420|Ensembl:ENSG00000052850|HPRD:05661|Vega:OTTHUMG00000166557 11 11p11.2 ALX homeobox 4 protein-coding ALX4 ALX homeobox 4 O aristaless-like homeobox 4|homeobox protein aristaless-like 4|homeodomain transcription factor ALX4 20121230 -9606 60558 GUF1 - EF-4 HGNC:25799|Ensembl:ENSG00000151806|HPRD:07821|Vega:OTTHUMG00000128608 4 4p12 GUF1 GTPase homolog (S. cerevisiae) protein-coding GUF1 GUF1 GTPase homolog (S. cerevisiae) O GTP-binding protein GUF1 homolog|GTPase GUF1|GTPase of unknown function 1|elongation factor 4 homolog|ribosomal back-translocase|translation factor GUF1, mitochondrial 20121230 -9606 60559 SPCS3 UNQ1841/PRO3567 PRO3567|SPC22/23|SPC3|YLR066W HGNC:26212|Ensembl:ENSG00000129128|HPRD:08001|Vega:OTTHUMG00000160789 4 4q34.2 signal peptidase complex subunit 3 homolog (S. cerevisiae) protein-coding SPCS3 signal peptidase complex subunit 3 homolog (S. cerevisiae) O SPase 22 kDa subunit|SPase 22/23 kDa subunit|microsomal signal peptidase 22/23 kDa subunit|microsomal signal peptidase 23 kDa subunit|signal peptidase complex subunit 3 20121230 -9606 60560 NAA35 RP11-379P1.1 MAK10|bA379P1.1 HGNC:24340|Ensembl:ENSG00000135040|HPRD:11291|Vega:OTTHUMG00000020131 9 9q21.33 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding NAA35 N(alpha)-acetyltransferase 35, NatC auxiliary subunit O MAK10 homolog, amino-acid N-acetyltransferase subunit|N-alpha-acetyltransferase 35, NatC auxiliary subunit|corneal wound healing-related protein|embryonic growth-associated protein homolog|protein MAK10 homolog 20121230 -9606 60561 RINT1 - RINT-1 HGNC:21876|MIM:610089|Ensembl:ENSG00000135249|HPRD:15250|Vega:OTTHUMG00000157400 7 7q22.3 RAD50 interactor 1 protein-coding RINT1 RAD50 interactor 1 O RAD50-interacting protein 1|hsRINT-1 20121230 -9606 60592 SCOC HRIHFB2072 SCOCO HGNC:20335|Ensembl:ENSG00000153130|HPRD:18027|Vega:OTTHUMG00000133416 4 4q31.1 short coiled-coil protein protein-coding SCOC short coiled-coil protein O short coiled coil protein 20121230 -9606 60598 KCNK15 - K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 HGNC:13814|MIM:607368|Ensembl:ENSG00000124249|HPRD:09564|Vega:OTTHUMG00000032544 20 20q13.12 potassium channel, subfamily K, member 15 protein-coding KCNK15 potassium channel, subfamily K, member 15 O TWIK-related acid-sensitive K(+) channel 5|acid-sensitive potassium channel protein TASK-5|potassium channel subfamily K member 15|potassium channel, subfamily K, member 14|two pore K(+) channel KT3.3|two pore potassium channel KT3.3 20121230 -9606 60625 DHX35 RP4-616B8.3 C20orf15|DDX35|KAIA0875 HGNC:15861|Ensembl:ENSG00000101452|HPRD:13145|Vega:OTTHUMG00000032463 20 20q11.22-q12 DEAH (Asp-Glu-Ala-His) box polypeptide 35 protein-coding DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35 O DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 35|DEAH box protein 35|DEAH-box protein 35|probable ATP-dependent RNA helicase DHX35 20121230 -9606 60626 RIC8A - RIC8 HGNC:29550|MIM:609146|Ensembl:ENSG00000177963|HPRD:12373|Vega:OTTHUMG00000119069 11 11p15.5 resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) protein-coding RIC8A resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) O synembryn|synembryn-A 20121230 -9606 60672 MIIP RP5-1077B9.4 IIP45 HGNC:25715|MIM:608772|Ensembl:ENSG00000116691|HPRD:07768|Vega:OTTHUMG00000002439 1 1p36.22 migration and invasion inhibitory protein protein-coding MIIP migration and invasion inhibitory protein O IGFBP2-binding protein|invasion-inhibitory protein 45|migration and invasion-inhibitory protein 20121230 -9606 60673 C12orf44 PP894 ATG101 HGNC:25679|Ensembl:ENSG00000123395|HPRD:08566|Vega:OTTHUMG00000169611 12 12q13.13 chromosome 12 open reading frame 44 protein-coding C12orf44 chromosome 12 open reading frame 44 O Atg13-interacting protein|autophagy-related protein 101 20121230 -9606 60674 GAS5 - NCRNA00030|SNHG2 HGNC:16355|MIM:608280 1 1q25.1 growth arrest-specific 5 (non-protein coding) miscRNA GAS5 growth arrest-specific 5 (non-protein coding) O - 20121230 -9606 60675 PROK2 - BV8|HH4|KAL4|MIT1|PK2 HGNC:18455|MIM:607002|Ensembl:ENSG00000163421|HPRD:08446|Vega:OTTHUMG00000158809 3 3p13 prokineticin 2 protein-coding PROK2 prokineticin 2 O prokineticin-2|protein Bv8 homolog 20121230 -9606 60676 PAPPA2 RP4-774I24.1 PAPP-A2|PAPP-E|PAPPE|PLAC3 HGNC:14615|Ensembl:ENSG00000116183|HPRD:10156|Vega:OTTHUMG00000035025 1 1q23-q25 pappalysin 2 protein-coding PAPPA2 pappalysin 2 O pappalysin-2|placenta-specific 3|pregnancy-associated plasma preproprotein-A2|pregnancy-associated plasma protein E1 20121230 -9606 60677 CELF6 - BRUNOL6 HGNC:14059|MIM:612681|Ensembl:ENSG00000140488|HPRD:10691|Vega:OTTHUMG00000133444 15 15q24 CUGBP, Elav-like family member 6 protein-coding CELF6 CUGBP, Elav-like family member 6 O Bruno -like 6, RNA binding protein|CELF-6|CUG-BP and ETR-3 like factor 6|CUG-BP- and ETR-3-like factor 6|CUGBP Elav-like family member 6|RNA-binding protein BRUNOL-6|bruno-like 6, RNA binding protein|bruno-like protein 6 20121230 -9606 60678 EEFSEC - EFSEC|SELB HGNC:24614|MIM:607695|Ensembl:ENSG00000132394|HPRD:07409|Vega:OTTHUMG00000159659 3 3q21.3 eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding EEFSEC eukaryotic elongation factor, selenocysteine-tRNA-specific O elongation factor for selenoprotein translation|elongation factor sec|selenocysteine-specific elongation factor 20121230 -9606 60680 CELF5 - BRUNOL-5|BRUNOL5|CELF-5 HGNC:14058|MIM:612680|Ensembl:ENSG00000161082|HPRD:12535|Vega:OTTHUMG00000180693 19 19p13 CUGBP, Elav-like family member 5 protein-coding CELF5 CUGBP, Elav-like family member 5 O CUG-BP and ETR-3 like factor 5|CUGBP Elav-like family member 5|RNA-binding protein BRUNOL-5|bruno-like 5 RNA binding protein 20121230 -9606 60681 FKBP10 PSEC0056 FKBP65|OI11|OI6|PPIASE|hFKBP65 HGNC:18169|MIM:607063|Ensembl:ENSG00000141756|HPRD:09522|Vega:OTTHUMG00000133497 17 17q21.2 FK506 binding protein 10, 65 kDa protein-coding FKBP10 FK506 binding protein 10, 65 kDa O 65 kDa FK506-binding protein|65 kDa FKBP|FK506-binding protein 10|FKBP-10|FKBP-65|PPIase FKBP10|immunophilin FKBP65|peptidyl-prolyl cis-trans isomerase FKBP10|rotamase 20121230 -9606 60682 SMAP1 RP1-104A17.1 SMAP-1 HGNC:19651|MIM:611372|Ensembl:ENSG00000112305|HPRD:18072|Vega:OTTHUMG00000014996 6 6q13 small ArfGAP 1 protein-coding SMAP1 small ArfGAP 1 O stromal membrane-associated GTPase-activating protein 1|stromal membrane-associated protein 1 20121230 -9606 60684 TRAPPC11 - C4orf41|foigr|gry HGNC:25751|MIM:614138|Ensembl:ENSG00000168538|HPRD:10968|Vega:OTTHUMG00000160673 4 4q35.1 trafficking protein particle complex 11 protein-coding TRAPPC11 trafficking protein particle complex 11 O foie gras homolog|gryzun homolog|trafficking protein particle complex subunit 11 20121230 -9606 60685 ZFAND3 RP1-295F6.1 TEX27 HGNC:18019|MIM:607455|Ensembl:ENSG00000156639|HPRD:12121|Vega:OTTHUMG00000014629 6 6pter-p22.3 zinc finger, AN1-type domain 3 protein-coding ZFAND3 zinc finger, AN1-type domain 3 O AN1-type zinc finger protein 3|testis expressed sequence 27|testis-expressed sequence 27 20121230 -9606 60686 C14orf93 - - HGNC:20162|Ensembl:ENSG00000100802|HPRD:12662|Vega:OTTHUMG00000028712 14 14q11.2 chromosome 14 open reading frame 93 protein-coding C14orf93 chromosome 14 open reading frame 93 O uncharacterized protein C14orf93 20121230 -9606 63027 SLC22A23 RP11-506K6.2 C6orf85 HGNC:21106|MIM:611697|Ensembl:ENSG00000137266|HPRD:12904|Vega:OTTHUMG00000014144 6 6p25.2 solute carrier family 22, member 23 protein-coding SLC22A23 solute carrier family 22, member 23 O ion transporter protein|solute carrier family 22 member 23 20121230 -9606 63035 BCORL1 RP3-510O21.1 BCoR-L1|CXorf10 HGNC:25657|MIM:300688|Ensembl:ENSG00000085185|HPRD:06517|Vega:OTTHUMG00000022379 X Xq25-q26.1 BCL6 corepressor-like 1 protein-coding BCORL1 BCL6 corepressor-like 1 O BCL-6 corepressor-like protein 1|BCL6 co-repressor-like 1|BCoR-like protein 1 20121230 -9606 63036 CELA2A - ELA2A|PE-1 HGNC:24609|MIM:609443|Ensembl:ENSG00000142615|HPRD:06495|Vega:OTTHUMG00000002258 1 1p36.21 chymotrypsin-like elastase family, member 2A protein-coding CELA2A chymotrypsin-like elastase family, member 2A O chymotrypsin-like elastase family member 2A|elastase 2A|elastase-2A|pancreatic elastase 2|pancreatic elastase IIA 20121230 -9606 63826 SRR - ILV1|ISO1 HGNC:14398|MIM:606477|Ensembl:ENSG00000167720|HPRD:10451|Vega:OTTHUMG00000090583 17 17p13 serine racemase protein-coding SRR serine racemase O D-serine ammonia-lyase|D-serine dehydratase|L-serine ammonia-lyase|L-serine dehydratase 20121230 -9606 63827 BCAN RP11-66D17.1 BEHAB|CSPG7 HGNC:23059|MIM:600347|Ensembl:ENSG00000132692|HPRD:02644|HPRD:09821|Vega:OTTHUMG00000033322 1 1q31 brevican protein-coding BCAN brevican O brain-enriched hyaluronan-binding protein|brevican core protein|chondroitin sulfate proteoglycan 7|chondroitin sulfate proteoglycan BEHAB 20121230 -9606 63869 PSORS6 - - HGNC:33483|MIM:605364 19 19p13 psoriasis susceptibility 6 unknown PSORS6 psoriasis susceptibility 6 O - 20120622 -9606 63870 PSORS5 - - HGNC:17953|MIM:604316 3 3q21 psoriasis susceptibility 5 unknown PSORS5 psoriasis susceptibility 5 O - 20120622 -9606 63874 ABHD4 - ABH4 HGNC:20154|Ensembl:ENSG00000100439|HPRD:12406|Vega:OTTHUMG00000028686 14 14q11.2 abhydrolase domain containing 4 protein-coding ABHD4 abhydrolase domain containing 4 O abhydrolase domain-containing protein 4|alpha/beta-hydrolase 4|lyso-N-acylphosphatidylethanolamine lipase 20121230 -9606 63875 MRPL17 - L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26 HGNC:14053|MIM:611830|Ensembl:ENSG00000158042|HPRD:10096|Vega:OTTHUMG00000165505 11 11p15.5-p15.4 mitochondrial ribosomal protein L17 protein-coding MRPL17 mitochondrial ribosomal protein L17 O 39S ribosomal protein L17, mitochondrial|LYST-interacting protein 2|LYST-interacting protein LIP2 20121230 -9606 63876 PKNOX2 - PREP2 HGNC:16714|MIM:613066|Ensembl:ENSG00000165495|HPRD:17857|Vega:OTTHUMG00000165884 11 11q24.2 PBX/knotted 1 homeobox 2 protein-coding PKNOX2 PBX/knotted 1 homeobox 2 O PBX/knotted homeobox 2|homeobox protein PKNOX2|homeobox protein PREP-2 20121230 -9606 63877 FAM204A RP11-319I23.1 C10orf84|bA319I23.1 HGNC:25794|Ensembl:ENSG00000165669|HPRD:12593|Vega:OTTHUMG00000019131 10 10q26.11 family with sequence similarity 204, member A protein-coding FAM204A family with sequence similarity 204, member A O protein FAM204A 20121230 -9606 63891 RNF123 FP1477 KPC1 HGNC:21148|MIM:614472|Ensembl:ENSG00000164068|HPRD:11499|Vega:OTTHUMG00000156891 3 3p24.3 ring finger protein 123 protein-coding RNF123 ring finger protein 123 O E3 ubiquitin-protein ligase RNF123|kip1 ubiquitination-promoting complex protein 1 20121230 -9606 63892 THADA - GITA HGNC:19217|MIM:611800|Ensembl:ENSG00000115970|HPRD:18177|Vega:OTTHUMG00000152398 2 2p21 thyroid adenoma associated protein-coding THADA thyroid adenoma associated O death receptor-interacting protein|gene inducing thyroid adenomas protein|thyroid adenoma-associated protein 20121230 -9606 63893 UBE2O - E2-230K HGNC:29554|Ensembl:ENSG00000175931|HPRD:10928|Vega:OTTHUMG00000180178 17 17q25.1 ubiquitin-conjugating enzyme E2O protein-coding UBE2O ubiquitin-conjugating enzyme E2O O ubiquitin carrier protein O|ubiquitin-conjugating enzyme E2 O|ubiquitin-conjugating enzyme E2 of 230 kDa|ubiquitin-conjugating enzyme E2-230K|ubiquitin-protein ligase O 20121230 -9606 63894 VIPAS39 - C14orf133|SPE-39|SPE39|VIPAR|VPS16B|hSPE-39 HGNC:20347|MIM:613401|Ensembl:ENSG00000151445|HPRD:10710|Vega:OTTHUMG00000171538 14 14q24.3-q31 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein-coding VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog O VPS33B-interacting protein in apical-basolateral polarity regulator|VPS33B-interacting protein in polarity and apical restriction|VPS33B-interacting protein involved in polarity and apical protein restriction|protein spe-39 homolog|spermatogenesis-defective protein 39 homolog 20121230 -9606 63895 PIEZO2 - C18orf30|C18orf58|FAM38B|FAM38B2|HsT748|HsT771 HGNC:26270|MIM:613629|Ensembl:ENSG00000154864|HPRD:07636|Vega:OTTHUMG00000178507 18 18p11.22 piezo-type mechanosensitive ion channel component 2 protein-coding PIEZO2 piezo-type mechanosensitive ion channel component 2 O family with sequence similarity 38, member B|family with sequence similarity 38, member B2|protein PIEZO2 20121230 -9606 63897 HEATR6 - ABC1 HGNC:24076|Ensembl:ENSG00000068097|HPRD:12399|Vega:OTTHUMG00000179981 17 17q23.1 HEAT repeat containing 6 protein-coding HEATR6 HEAT repeat containing 6 O HEAT repeat-containing protein 6|amplified in breast cancer 1|amplified in breast cancer protein 1 20121230 -9606 63898 SH2D4A - PPP1R38|SH2A HGNC:26102|MIM:614968|Ensembl:ENSG00000104611|HPRD:08340|Vega:OTTHUMG00000097005 8 8p21.2 SH2 domain containing 4A protein-coding SH2D4A SH2 domain containing 4A O SH2 domain-containing protein 4A|protein SH(2)A|protein phosphatase 1, regulatory subunit 38 20121230 -9606 63899 NSUN3 MSTP077 MST077 HGNC:26208|Ensembl:ENSG00000178694|HPRD:08657|Vega:OTTHUMG00000159025 3 3q11.1 NOP2/Sun domain family, member 3 protein-coding NSUN3 NOP2/Sun domain family, member 3 O NOL1/NOP2/Sun domain family 3|NOL1/NOP2/Sun domain family member 3|NOL1/NOP2/Sun domain family, member 3|putative methyltransferase NSUN3 20121230 -9606 63901 FAM111A - - HGNC:24725|Ensembl:ENSG00000166801|HPRD:07015|Vega:OTTHUMG00000167280 11 11q12.1 family with sequence similarity 111, member A protein-coding FAM111A family with sequence similarity 111, member A O protein FAM111A 20121230 -9606 63904 DUSP21 - LMWDSP21 HGNC:20476|MIM:300678|Ensembl:ENSG00000189037|HPRD:06494|Vega:OTTHUMG00000021401 X Xp11.4-p11.23 dual specificity phosphatase 21 protein-coding DUSP21 dual specificity phosphatase 21 O BJ-HCC-26 tumor antigen|LMW-DSP21|dual specificity protein phosphatase 21|low molecular weight dual specificity phosphatase 21 20121230 -9606 63905 MANBAL RP5-1141E15.1 - HGNC:15799|Ensembl:ENSG00000101363|HPRD:14356|Vega:OTTHUMG00000032414 20 20q11.23-q12 mannosidase, beta A, lysosomal-like protein-coding MANBAL mannosidase, beta A, lysosomal-like O protein MANBAL 20121230 -9606 63906 GPATCH3 RP1-50O24.7 GPATC3 HGNC:25720|Ensembl:ENSG00000198746|HPRD:07772|Vega:OTTHUMG00000004229 1 1p35.3-p35.1 G patch domain containing 3 protein-coding GPATCH3 G patch domain containing 3 O G patch domain-containing protein 3 20121230 -9606 63908 NAPB RP3-322G13.2 SNAP-BETA|SNAPB HGNC:15751|MIM:611270|Ensembl:ENSG00000125814|HPRD:17627|Vega:OTTHUMG00000032062 20 20p12.3-p11.21 N-ethylmaleimide-sensitive factor attachment protein, beta protein-coding NAPB N-ethylmaleimide-sensitive factor attachment protein, beta O beta-soluble NSF attachment protein 20121230 -9606 63910 SLC17A9 RP11-305P22.6 C20orf59 HGNC:16192|MIM:612107|Ensembl:ENSG00000101194|HPRD:12777|Vega:OTTHUMG00000032951 20 20q13.33 solute carrier family 17, member 9 protein-coding SLC17A9 solute carrier family 17, member 9 O solute carrier family 17 member 9|vesicular nucleotide transporter SLC17A9 20121230 -9606 63914 C6orf164 - dJ102H19.4 HGNC:21404 6 6q15-q16.1 chromosome 6 open reading frame 164 miscRNA C6orf164 chromosome 6 open reading frame 164 O - 20121230 -9606 63915 BLOC1S5 - MU|MUTED HGNC:18561|MIM:607289|Ensembl:ENSG00000188428|HPRD:06289|Vega:OTTHUMG00000014220 6 6p25.1-p24.3 biogenesis of lysosomal organelles complex-1, subunit 5, muted protein-coding BLOC1S5 biogenesis of lysosomal organelles complex-1, subunit 5, muted O muted homolog|protein Muted homolog 20121230 -9606 63916 ELMO2 RP11-394O2.2 CED-12|CED12|ELMO-2 HGNC:17233|MIM:606421|Ensembl:ENSG00000062598|HPRD:12103|Vega:OTTHUMG00000033070 20 20q13 engulfment and cell motility 2 protein-coding ELMO2 engulfment and cell motility 2 O PH domain protein CED12A|ced-12 homolog 2|engulfment and cell motility protein 2|hCed-12A|protein ced-12 homolog A 20121230 -9606 63917 GALNT11 tcag7.1057 - HGNC:19875|Ensembl:ENSG00000178234|HPRD:13560|Vega:OTTHUMG00000157251 7 7q36.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) protein-coding GALNT11 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) O GALNAC-T11|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11|polypeptide GalNAc transferase 11|polypeptide N-acetylgalactosaminyltransferase 11|pp-GaNTase 11|protein-UDP acetylgalactosaminyltransferase 11 20121230 -9606 63920 C5orf54 - Buster3 HGNC:30804|Ensembl:ENSG00000221886|HPRD:17430|Vega:OTTHUMG00000163554 5 5q33.3 chromosome 5 open reading frame 54 protein-coding C5orf54 chromosome 5 open reading frame 54 O transposon-derived Buster3 transposase-like protein 20121230 -9606 63922 CHTF18 LA16c-321D2.4 C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL HGNC:18435|MIM:613201|Ensembl:ENSG00000127586|HPRD:13059|Vega:OTTHUMG00000047838 16 16p13.3 CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) protein-coding CHTF18 CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) O C321D2.3 (novel protein)|C321D2.4 (novel protein)|chromosome transmission fidelity protein 18 homolog|hCTF18|homolog of yeast CHL12|some homology with holliday junction DNA helicase RUVB like 20121230 -9606 63923 TNN - TN-W HGNC:22942|Ensembl:ENSG00000120332|Vega:OTTHUMG00000034882 1 1q23-q24 tenascin N protein-coding TNN tenascin N O TN-N|tenascin-N 20121230 -9606 63924 CIDEC - CIDE-3|CIDE3|FSP27 HGNC:24229|MIM:612120|Ensembl:ENSG00000187288|HPRD:13060|Vega:OTTHUMG00000128522 3 3p25.3 cell death-inducing DFFA-like effector c protein-coding CIDEC cell death-inducing DFFA-like effector c O cell death activator CIDE-3|fat specific protein 27 20121230 -9606 63925 ZNF335 - NIF-1|NIF1|NIF2 HGNC:15807|MIM:610827|Ensembl:ENSG00000198026|HPRD:11709|Vega:OTTHUMG00000032637 20 20q13.12 zinc finger protein 335 protein-coding ZNF335 zinc finger protein 335 O NRC-interacting factor 1|zinc-finger/leucine-zipper co-transducer NIF1 20121230 -9606 63926 ANKRD5 RP5-839B4.5 dJ839B4.6 HGNC:15803|Ensembl:ENSG00000132623|HPRD:10652|Vega:OTTHUMG00000031860 20 20p12.2 ankyrin repeat domain 5 protein-coding ANKRD5 ankyrin repeat domain 5 O ankyrin repeat domain-containing protein 5 20121230 -9606 63928 CHP2 - - HGNC:24927|Ensembl:ENSG00000166869|HPRD:14259|Vega:OTTHUMG00000131611 16 16p12.2 calcineurin-like EF hand protein 2 protein-coding CHP2 calcineurin-like EF hand protein 2 O calcineurin B homologous protein 2|hepatocellular carcinoma antigen gene 520|hepatocellular carcinoma-associated antigen 520 20121230 -9606 63929 XPNPEP3 RP11-554C12.3 APP3|NPHPL1 HGNC:28052|MIM:613553|Ensembl:ENSG00000196236|HPRD:10052|Vega:OTTHUMG00000151312 22 22q13.2 X-prolyl aminopeptidase (aminopeptidase P) 3, putative protein-coding XPNPEP3 X-prolyl aminopeptidase (aminopeptidase P) 3, putative O X-Pro aminopeptidase 3|probable Xaa-Pro aminopeptidase 3 20121230 -9606 63930 LOC63930 - - HPRD:12773 20 20q13.33 uncharacterized LOC63930 miscRNA - - - - 20121230 -9606 63931 MRPS14 - DJ262D12.2|HSMRPS14|MRP-S14|S14mt HGNC:14049|MIM:611978|Ensembl:ENSG00000120333|HPRD:14777|Vega:OTTHUMG00000034878 1 1q25.1 mitochondrial ribosomal protein S14 protein-coding MRPS14 mitochondrial ribosomal protein S14 O 28S ribosomal protein S14, mitochondrial|mitochondrial 28S ribosomal protein S14 20121230 -9606 63932 CXorf56 - - HGNC:26239|Ensembl:ENSG00000018610|HPRD:06541|Vega:OTTHUMG00000022276 X Xq23 chromosome X open reading frame 56 protein-coding CXorf56 chromosome X open reading frame 56 O UPF0428 protein CXorf56 20121230 -9606 63933 CCDC90A - C6orf79 HGNC:21097|Ensembl:ENSG00000050393|HPRD:12833|Vega:OTTHUMG00000014279 6 6p23 coiled-coil domain containing 90A protein-coding CCDC90A coiled-coil domain containing 90A O coiled-coil domain-containing protein 90A, mitochondrial 20121230 -9606 63934 ZNF667 - MIPU1 HGNC:28854|MIM:611024|Ensembl:ENSG00000198046|HPRD:08592|Vega:OTTHUMG00000181941 19 19q13.43 zinc finger protein 667 protein-coding ZNF667 zinc finger protein 667 O myocardial ischemic preconditioning upregulated 1 ortholog 20121230 -9606 63935 PCIF1 - C20orf67 HGNC:16200|Ensembl:ENSG00000100982|HPRD:12779|Vega:OTTHUMG00000032635 20 20q13.12 PDX1 C-terminal inhibiting factor 1 protein-coding PCIF1 PDX1 C-terminal inhibiting factor 1 O PDX-1 C terminus-interacting factor 1|phosphorylated CTD-interacting factor 1 20121230 -9606 63939 FAM217B - C20orf177|dJ551D2.5 HGNC:16170|Ensembl:ENSG00000196227|HPRD:12758|Vega:OTTHUMG00000032873 20 20q13.33 family with sequence similarity 217, member B protein-coding FAM217B family with sequence similarity 217, member B O protein FAM217B|uncharacterized protein C20orf177 20121230 -9606 63940 GPSM3 DAAP-218M18.6 AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1 HGNC:13945|Ensembl:ENSG00000213654|HPRD:13605|Vega:OTTHUMG00000031244 6 6p21.3 G-protein signaling modulator 3 protein-coding GPSM3 G-protein signaling modulator 3 O G-protein signaling modulator 3 (AGS3-like, C. elegans)|G-protein signalling modulator 3 (AGS3-like, C. elegans)|G-protein-signaling modulator 3|activator of G-protein signaling 4 20121230 -9606 63941 NECAB3 RP1-63M2.1 APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5 HGNC:15851|MIM:612478|Ensembl:ENSG00000125967|HPRD:07168|Vega:OTTHUMG00000032264 20 20q11.22 N-terminal EF-hand calcium binding protein 3 protein-coding NECAB3 N-terminal EF-hand calcium binding protein 3 O EF-hand calcium binding protein 3|N-terminal EF-hand calcium-binding protein 3|Nek2-interacting protein 1|X11L-binding protein 51|amyloid beta (A4) precursor protein-binding, family A, member 2 binding protein|amyloid beta A4 protein-binding family A member 2-binding protein|neuronal calcium-binding protein 3|neuronal calcium-binding protein NECAB3|synaptotagmin interacting protein 2|synaptotagmin interacting protein STIP3 20121230 -9606 63943 FKBPL DADB-220I18.2 DIR1|NG7|WISP39 HGNC:13949|Ensembl:ENSG00000204315|HPRD:16901|Vega:OTTHUMG00000031129 6 6p21.3 FK506 binding protein like protein-coding FKBPL FK506 binding protein like O FK506-binding protein like|FK506-binding protein-like|WAF-1/CIP1 stabilizing protein 39 20121230 -9606 63944 SCZD10 - - HGNC:17339|MIM:605419 15 15q15 schizophrenia disorder 10 (periodic catatonia) unknown SCZD10 schizophrenia disorder 10 (periodic catatonia) O - 20120622 -9606 63945 DFNA40 - - HGNC:14070 16 16p12 deafness, autosomal dominant 40 unknown DFNA40 deafness, autosomal dominant 40 O - 20110215 -9606 63946 DMRTC2 - - HGNC:13911|MIM:614806|Ensembl:ENSG00000142025|HPRD:16829 19 19q13.2 DMRT-like family C2 protein-coding DMRTC2 DMRT-like family C2 O doublesex- and mab-3-related transcription factor C2 20121230 -9606 63947 DMRTC1 - - HGNC:13910|MIM:300878|Ensembl:ENSG00000159123|HPRD:06491|Vega:OTTHUMG00000021820 X Xq13.2 DMRT-like family C1 protein-coding DMRTC1 DMRT-like family C1 O doublesex- and mab-3-related transcription factor C1|doublesex-mab-3 20121230 -9606 63948 DMRTB1 - - HGNC:13913|MIM:614805|Ensembl:ENSG00000143006|HPRD:16828|Vega:OTTHUMG00000008080 1 1p32.3 DMRT-like family B with proline-rich C-terminal, 1 protein-coding DMRTB1 DMRT-like family B with proline-rich C-terminal, 1 O doublesex- and mab-3-related transcription factor B1 20121230 -9606 63950 DMRTA2 - - HGNC:13908|MIM:614804|Ensembl:ENSG00000142700|Vega:OTTHUMG00000007884 1 1p32.3 DMRT-like family A2 protein-coding DMRTA2 DMRT-like family A2 O doublesex- and mab-3-related transcription factor 5|doublesex- and mab-3-related transcription factor A2 20121230 -9606 63951 DMRTA1 - DMO|DMRT4 HGNC:13826|MIM:614803|Ensembl:ENSG00000176399|HPRD:10913|Vega:OTTHUMG00000019693 9 9p21.3 DMRT-like family A1 protein-coding DMRTA1 DMRT-like family A1 O doublesex- and mab-3-related transcription factor A1 20121230 -9606 63967 CLSPN - - HGNC:19715|MIM:605434|Ensembl:ENSG00000092853|HPRD:09257|Vega:OTTHUMG00000004168 1 1p34.2 claspin protein-coding CLSPN claspin O claspin homolog|hClaspin 20121230 -9606 63970 TP53AIP1 - P53AIP1 HGNC:29984|MIM:605426|Ensembl:ENSG00000120471|HPRD:10397|Vega:OTTHUMG00000165797 11 11q24 tumor protein p53 regulated apoptosis inducing protein 1 protein-coding TP53AIP1 tumor protein p53 regulated apoptosis inducing protein 1 O p53-regulated apoptosis-inducing protein 1 20121230 -9606 63971 KIF13A RP11-500C11.2 RBKIN|bA500C11.2 HGNC:14566|MIM:605433|Ensembl:ENSG00000137177|HPRD:09256|Vega:OTTHUMG00000014313 6 6p23 kinesin family member 13A protein-coding KIF13A kinesin family member 13A O homolog of mouse KIF13A mannose-6-phosphate receptor transporter|kinesin-like protein KIF13A|kinesin-like protein RBKIN 20121230 -9606 63973 NEUROG2 - Atoh4|Math4A|NGN2|bHLHa8|ngn-2 HGNC:13805|MIM:606624|Ensembl:ENSG00000178403|HPRD:06976|Vega:OTTHUMG00000132907 4 4q25 neurogenin 2 protein-coding NEUROG2 neurogenin 2 O class A basic helix-loop-helix protein 8|neurogenin-2|protein atonal homolog 4 20121230 -9606 63974 NEUROD6 My051 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 HGNC:13804|MIM:611513|Ensembl:ENSG00000164600|HPRD:11387|Vega:OTTHUMG00000022865 7 7p14.3 neuronal differentiation 6 protein-coding NEUROD6 neuronal differentiation 6 O brain my051 protein|class A basic helix-loop-helix protein 2|neurogenic differentiation factor 6|protein atonal homolog 2 20121230 -9606 63976 PRDM16 - MEL1|PFM13 HGNC:14000|MIM:605557|Ensembl:ENSG00000142611|HPRD:16122|Vega:OTTHUMG00000000581 1 1p36.23-p33 PR domain containing 16 protein-coding PRDM16 PR domain containing 16 O MDS1/EVI1-like gene 1|PR domain zinc finger protein 16|transcription factor MEL1 20121230 -9606 63977 PRDM15 - C21orf83|PFM15|ZNF298 HGNC:13999|Ensembl:ENSG00000141956|HPRD:11458|Vega:OTTHUMG00000086781 21 21q22.3 PR domain containing 15 protein-coding PRDM15 PR domain containing 15 O PR domain zinc finger protein 15|PR domain-containing protein 15|zinc finger protein 298 20121230 -9606 63978 PRDM14 - PFM11 HGNC:14001|MIM:611781|Ensembl:ENSG00000147596|HPRD:11457|Vega:OTTHUMG00000150495 8 8q13.3 PR domain containing 14 protein-coding PRDM14 PR domain containing 14 O PR domain zinc finger protein 14|PR domain-containing protein 14 20121230 -9606 63979 FIGNL1 - - HGNC:13286|Ensembl:ENSG00000132436|HPRD:10958|Vega:OTTHUMG00000022866 7 7p12.1 fidgetin-like 1 protein-coding FIGNL1 fidgetin-like 1 O fidgetin-like protein 1 20121230 -9606 63982 ANO3 GENX-3947 C11orf25|TMEM16C HGNC:14004|MIM:610110|Ensembl:ENSG00000134343|HPRD:15526|Vega:OTTHUMG00000166096 11 11p14.2 anoctamin 3 protein-coding ANO3 anoctamin 3 O anoctamin-3|transmembrane protein 16C (eight membrane-spanning domains) 20121230 -9606 64002 PCGEM1 - LINC00071|NCRNA00071 HGNC:30145|MIM:605443 2 2q32 PCGEM1, prostate-specific transcript (non-protein coding) miscRNA PCGEM1 PCGEM1, prostate-specific transcript (non-protein coding) O - 20121230 -9606 64005 MYO1G - HA2|MHAG HGNC:13880|MIM:613445|Ensembl:ENSG00000136286|HPRD:17622|Vega:OTTHUMG00000155821 7 7p13-p11.2 myosin IG protein-coding MYO1G myosin IG O minor histocompatibility antigen HA-2|myosin-Ig|unconventional myosin-Ig 20121230 -9606 64006 ERVK-6 - ERVK6|HERV-K(C7)|HERV-K108|K-Rev|c-orf|cORF HGNC:13915|MIM:605626|HPRD:16131 7 7p22.1 endogenous retrovirus group K, member 6 unknown ERVK-6 endogenous retrovirus group K, member 6 O - 20121211 -9606 64061 TSPYL2 RP1-290F12.2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX HGNC:24358|MIM:300564|Ensembl:ENSG00000184205|HPRD:06713|Vega:OTTHUMG00000021597 X Xp11.2 TSPY-like 2 protein-coding TSPYL2 TSPY-like 2 O CASK-interacting nucleosome assembly protein|CTCL tumor antigen se20-4|CTCL-associated antigen se20-4|TSPY-like protein 2|cell division autoantigen 1|cutaneous T-cell lymphoma-associated antigen se20-4|cutaneous T-cell lymphoma-associated tumor antigen se20-4|differentially expressed nucleolar TGF-beta1 target|differentially-expressed nucleolar TGF-beta1 target protein|nuclear protein of 79 kDa|testis-specific Y-encoded-like protein 2|testis-specific protein Y encoded-like 2 20121230 -9606 64062 RBM26 PRO1777 ARRS2|C13orf10|RP11-255E21.1|SE70-2|ZC3H17 HGNC:20327|Ensembl:ENSG00000139746|HPRD:12611|Vega:OTTHUMG00000017133 13 13q31.1 RNA binding motif protein 26 protein-coding RBM26 RNA binding motif protein 26 O CTCL tumor antigen se70-2|RNA-binding motif protein 26|RNA-binding protein 26|acidic rich RS domain containing 2|cutaneous T-cell lymphoma tumor antigen se70-2 20121230 -9606 64063 PRSS22 SP001LA BSSP-4|hBSSP-4 HGNC:14368|MIM:609343|Ensembl:ENSG00000005001|HPRD:08336|Vega:OTTHUMG00000128961 16 16p13.3 protease, serine, 22 protein-coding PRSS22 protease, serine, 22 O brain-specific serine protease 4|prosemin|protease, serine S1 family member 22|serine protease 22|serine protease 26|tryptase epsilon 20121230 -9606 64064 OXCT2 FKSG25 SCOTT HGNC:18606|MIM:610289|Ensembl:ENSG00000198754|HPRD:15093|Vega:OTTHUMG00000009249 1 1p34 3-oxoacid CoA transferase 2 protein-coding OXCT2 3-oxoacid CoA transferase 2 O 3-oxoacid CoA-transferase 2A|3-oxoacid-CoA transferase 2A|succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial|succinyl-CoA:3-ketoacid-coenzyme A transferase 2, mitochondrial|testis-specific succinyl CoA:3-oxoacid CoA-transferase|testis-specific succinyl-CoA:3-oxoacid CoA-transferase 20121230 -9606 64065 PERP - KCP1|KRTCAP1|PIGPC1|RP3-496H19.1|THW|dJ496H19.1 HGNC:17637|MIM:609301|Ensembl:ENSG00000112378|HPRD:17836|Vega:OTTHUMG00000015668 6 6q24 PERP, TP53 apoptosis effector protein-coding PERP PERP, TP53 apoptosis effector O 1110017A08Rik|KCP-1|keratinocyte-associated protein 1|keratinocytes associated protein 1|p53 apoptosis effector related to PMP-22|p53 apoptosis effector related to PMP22|p53-induced protein PIGPC1|transmembrane protein THW 20121230 -9606 64066 MMP27 UNQ2503/PRO5992 MMP-27 HGNC:14250|Ensembl:ENSG00000137675|HPRD:07025|Vega:OTTHUMG00000168099 11 11q24 matrix metallopeptidase 27 protein-coding MMP27 matrix metallopeptidase 27 O matrix metalloprotease 27|matrix metalloproteinase 27|matrix metalloproteinase-27 20121230 -9606 64067 NPAS3 - MOP6|PASD6|bHLHe12 HGNC:19311|MIM:609430|Ensembl:ENSG00000151322|HPRD:11400|Vega:OTTHUMG00000140215 14 14q12-q13 neuronal PAS domain protein 3 protein-coding NPAS3 neuronal PAS domain protein 3 O PAS domain-containing protein 6|basic-helix-loop-helix-PAS protein MOP6|class E basic helix-loop-helix protein 12|member of PAS protein 6|neuronal PAS domain-containing protein 3|neuronal PAS3 20121230 -9606 64069 ATOD - ATOD1 MIM:603165 3 3q21 Dermatitis, atopic unknown - - - - 20120622 -9606 64072 CDH23 RP11-472K8.4 CDHR23|USH1D HGNC:13733|MIM:605516|Ensembl:ENSG00000107736|HPRD:05699|Vega:OTTHUMG00000019347 10 10q22.1 cadherin-related 23 protein-coding CDH23 cadherin-related 23 O cadherin-23|cadherin-like 23|cadherin-related family member 23|otocadherin 20121230 -9606 64073 C19orf33 - H2RSP|IMUP|IMUP-1|IMUP-2 HGNC:16668|Ensembl:ENSG00000167644|HPRD:12706|Vega:OTTHUMG00000181894 19 19q13.2 chromosome 19 open reading frame 33 protein-coding C19orf33 chromosome 19 open reading frame 33 O HAI-2 related small protein|HAI-2-related small protein|hepatocyte growth factor activator inhibitor type 2-related small protein|immortalization up-regulated protein|immortalization-upregulated protein 20121230 -9606 64077 LHPP RP11-12J10.1 HDHD2B HGNC:30042|Ensembl:ENSG00000107902|HPRD:17274|Vega:OTTHUMG00000019214 10 10q26.13 phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase O hLHPP 20121230 -9606 64078 SLC28A3 - CNT3 HGNC:16484|MIM:608269|Ensembl:ENSG00000197506|HPRD:12200|Vega:OTTHUMG00000020117 9 9q22.2 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 protein-coding SLC28A3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 O concentrative Na(+)-nucleoside cotransporter 3|concentrative Na+-nucleoside cotransporter|solute carrier family 28 member 3 20121230 -9606 64080 RBKS - RBSK HGNC:30325|MIM:611132|Ensembl:ENSG00000171174|HPRD:15222|Vega:OTTHUMG00000097833 2 2p23.3 ribokinase protein-coding RBKS ribokinase O 5230400M11Rik 20121230 -9606 64081 PBLD - MAWBP|MAWDBP HGNC:23301|MIM:612189|Ensembl:ENSG00000108187|HPRD:14366|Vega:OTTHUMG00000073949 10 10q21.3 phenazine biosynthesis-like protein domain containing protein-coding PBLD phenazine biosynthesis-like protein domain containing O MAWD-binding protein|phenazine biosynthesis-like domain-containing protein 20121230 -9606 64083 GOLPH3 - GOPP1|GPP34|MIDAS HGNC:15452|MIM:612207|Ensembl:ENSG00000113384|HPRD:11007|Vega:OTTHUMG00000090679 5 5p13.3 golgi phosphoprotein 3 (coat-protein) protein-coding GOLPH3 golgi phosphoprotein 3 (coat-protein) O Golgi phosphoprotein 3|coat protein GPP34|coat-protein|golgi peripheral membrane protein 1, 34 kDa|golgi protein|golgi-associated protein|mitochondrial DNA absence factor 20121230 -9606 64084 CLSTN2 - ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma HGNC:17448|MIM:611323|Ensembl:ENSG00000158258|HPRD:13077|Vega:OTTHUMG00000160139 3 3q23 calsyntenin 2 protein-coding CLSTN2 calsyntenin 2 O alcadein gamma|alcadein-gamma|cadherin-related family member 13|calsyntenin-2 20121230 -9606 64087 MCCC2 - MCCB HGNC:6937|MIM:609014|Ensembl:ENSG00000131844|HPRD:01952|Vega:OTTHUMG00000162505 5 5q12-q13 methylcrotonoyl-CoA carboxylase 2 (beta) protein-coding MCCC2 methylcrotonoyl-CoA carboxylase 2 (beta) O 3-methylcrotonyl-CoA carboxylase 2|3-methylcrotonyl-CoA carboxylase non-biotin-containing subunit|3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta|MCCase subunit beta|biotin carboxylase|methylcrotonoyl-CoA carboxylase beta chain, mitochondrial|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)|non-biotin containing subunit of 3-methylcrotonyl-CoA carboxylase 20121230 -9606 64089 SNX16 - - HGNC:14980|MIM:614903|Ensembl:ENSG00000104497|HPRD:15411|Vega:OTTHUMG00000164727 8 8q21.13 sorting nexin 16 protein-coding SNX16 sorting nexin 16 O sorting nexin-16 20121230 -9606 64090 GAL3ST2 hCG_31746 GAL3ST-2|GP3ST HGNC:24869|MIM:608237|Ensembl:ENSG00000154252|HPRD:16303|Vega:OTTHUMG00000151473 2 2q37.3 galactose-3-O-sulfotransferase 2 protein-coding GAL3ST2 galactose-3-O-sulfotransferase 2 O beta-galactose-3-O-sulfotransferase 2|gal 3-O-sulphotransferase|gal-beta-1, 3-GalNAc 3'-sulfotransferase 2|galbeta1-3GalNAc 3'-sulfotransferase 2|glycoprotein beta-Gal 3'-sulfotransferase 2 20121230 -9606 64091 POPDC2 - POP2 HGNC:17648|MIM:605823|Ensembl:ENSG00000121577|HPRD:16160|Vega:OTTHUMG00000159438 3 3q13.33 popeye domain containing 2 protein-coding POPDC2 popeye domain containing 2 O popeye domain-containing protein 2|popeye protein 2 20121230 -9606 64092 SAMSN1 - HACS1|NASH1|SASH2|SH3D6B|SLy2 HGNC:10528|MIM:607978|Ensembl:ENSG00000155307|HPRD:06413|Vega:OTTHUMG00000074317 21 21q11 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 O SAM and SH3 domain containing 2|SAM domain, SH3 domain and nuclear localisation signals, 1|SAM domain, SH3 domain and nuclear localization signals protein 1|SAM domain-containing protein SAMSN-1|SH3-SAM adaptor protein|Src homology domain 3 (SH3)-containing adapter protein SH3 lymphocyte protein 2|hematopoietic adapter-containing SH3 and sterile α-motif (SAM) domains 1|hematopoietic adapter-containing SH3 and sterile alpha-motif (SAM) domains 1|hematopoietic adaptor containing SH3 and SAM domains 1|nuclear localization signals, SAM and SH3 domain containing 1 20121230 -9606 64093 SMOC1 - OAS HGNC:20318|MIM:608488|Ensembl:ENSG00000198732|HPRD:12244|Vega:OTTHUMG00000171237 14 14q24.2 SPARC related modular calcium binding 1 protein-coding SMOC1 SPARC related modular calcium binding 1 O SPARC-related modular calcium-binding protein 1|secreted modular calcium-binding protein 1 20121230 -9606 64094 SMOC2 RP11-270C4__A.1 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 HGNC:20323|MIM:607223|Ensembl:ENSG00000112562|HPRD:06244|Vega:OTTHUMG00000016050 6 6q27 SPARC related modular calcium binding 2 protein-coding SMOC2 SPARC related modular calcium binding 2 O SMAP-2|SMOC-2|SPARC-related modular calcium-binding protein 2|secreted modular calcium-binding protein 2|smooth muscle associated protein 2|smooth muscle-associated protein 2|thyroglobulin type-1 repeat containing protein 20121230 -9606 64096 GFRA4 RP5-964F7.1 - HGNC:13821|Ensembl:ENSG00000125861|HPRD:11003|Vega:OTTHUMG00000031748 20 20p13-p12 GDNF family receptor alpha 4 protein-coding GFRA4 GDNF family receptor alpha 4 O GDNF family receptor alpha-4|GDNF receptor alpha-4|GDNFR-alpha-4|GFR receptor alpha 4|GFR-alpha-4|persephin receptor 20121230 -9606 64097 EPB41L4A - EPB41L4|NBL4 HGNC:13278|MIM:612141|Ensembl:ENSG00000129595|HPRD:09939|Vega:OTTHUMG00000162902 5 5q21.3 erythrocyte membrane protein band 4.1 like 4A protein-coding EPB41L4A erythrocyte membrane protein band 4.1 like 4A O band 4.1-like protein 4A|erythrocyte protein band 4.1-like 4 20121230 -9606 64098 PARVG RP4-671O14.2 - HGNC:14654|MIM:608122|Ensembl:ENSG00000138964|HPRD:16285|Vega:OTTHUMG00000150473 22 22q13.31 parvin, gamma protein-coding PARVG parvin, gamma O gamma-parvin 20121230 -9606 64100 ELSPBP1 - E12|EDDM12|HE12 HGNC:14417|MIM:607443|Ensembl:ENSG00000169393|HPRD:12119 19 19q13.33 epididymal sperm binding protein 1 protein-coding ELSPBP1 epididymal sperm binding protein 1 O epididymal protein 12|epididymal secretory protein 12|epididymal sperm-binding protein 1 20121230 -9606 64101 LRRC4 NAG14 NGL-2 HGNC:15586|MIM:610486|Ensembl:ENSG00000128594|HPRD:10060|Vega:OTTHUMG00000157563 7 7q31.3 leucine rich repeat containing 4 protein-coding LRRC4 leucine rich repeat containing 4 O brain tumor associated protein LRRC4|brain tumor-associated protein BAG|leucine-rich repeat-containing 4|leucine-rich repeat-containing protein 4|nasopharyngeal carcinoma-associated gene 14 protein|netrin-G2 ligand 20121230 -9606 64102 TNMD UNQ771/PRO1565 BRICD4|CHM1L|TEM HGNC:17757|MIM:300459|Ensembl:ENSG00000000005|HPRD:02352|Vega:OTTHUMG00000022001 X Xq21.33-q23 tenomodulin protein-coding TNMD tenomodulin O BRICHOS domain containing 4|chondromodulin-1-like protein|chondromodulin-I-like protein|chondromodulin-IB|hChM1L|hTeM|myodulin|tendin 20121230 -9606 64105 CENPK FKSG14 AF5alpha|CENP-K|P33|Solt HGNC:29479|MIM:611502|Ensembl:ENSG00000123219|HPRD:13323|Vega:OTTHUMG00000131227 5 5q12.3 centromere protein K protein-coding CENPK centromere protein K O SoxLZ/Sox6-binding protein Solt|interphase centromere complex protein 37|leucine zipper protein FKSG14|protein AF-5alpha 20121230 -9606 64106 NPFFR1 RP11-203J14.1 GPR147|NPFF1|NPFF1R1|OT7T022 HGNC:17425|MIM:607448|Ensembl:ENSG00000148734|HPRD:12120|Vega:OTTHUMG00000018404 10 10q21-q22 neuropeptide FF receptor 1 protein-coding NPFFR1 neuropeptide FF receptor 1 O G protein-coupled receptor 147|G-protein coupled receptor 147|RFamide-related peptide receptor OT7T022|neuropeptide FF 1 20121230 -9606 64108 RTP4 - IFRG28 HGNC:23992|MIM:609350|Ensembl:ENSG00000136514|HPRD:17136|Vega:OTTHUMG00000156459 3 3q27.3 receptor (chemosensory) transporter protein 4 protein-coding RTP4 receptor (chemosensory) transporter protein 4 O 28 kDa interferon-responsive protein|28kD interferon responsive protein|receptor transporter protein 4|receptor transporting protein 4|receptor-transporting protein 4 20121230 -9606 64109 CRLF2 WI2-87105E3.1 CRL2|CRLF2Y|TSLPR HGNC:14281|MIM:300357|MIM:400023|Ensembl:ENSG00000205755|HPRD:02288|Vega:OTTHUMG00000067432 X|Y Xp22.3; Yp11.3 cytokine receptor-like factor 2 protein-coding CRLF2 cytokine receptor-like factor 2 O IL-XR|P2RY8/CRLF2 fusion|TSLP receptor|cytokine receptor CRL2 precusor|cytokine receptor-like 2|thymic stromal lymphopoietin protein receptor|thymic stromal lymphopoietin receptor|thymic stromal-derived lymphopoietin receptor 20121230 -9606 64110 MAGEF1 - - HGNC:29639|MIM:609267|Ensembl:ENSG00000177383|HPRD:14348|Vega:OTTHUMG00000156712 3 3q13 melanoma antigen family F, 1 protein-coding MAGEF1 melanoma antigen family F, 1 O MAGE-F1 antigen|melanoma-associated antigen F1 20121230 -9606 64111 NPVF tcag7.1077 C7orf9|RFRP HGNC:13782|Ensembl:ENSG00000105954|Vega:OTTHUMG00000128509 7 7p21-p15 neuropeptide VF precursor protein-coding NPVF neuropeptide VF precursor O FMRFamide-related peptides|RFamide-related peptide|neuropeptide NPVF 20121230 -9606 64112 MOAP1 - MAP-1|PNMA4 HGNC:16658|MIM:609485|Ensembl:ENSG00000165943|HPRD:17580|Vega:OTTHUMG00000169184 14 14q32 modulator of apoptosis 1 protein-coding MOAP1 modulator of apoptosis 1 O MAP1|paraneoplastic Ma antigen family member 4|paraneoplastic antigen Ma4|paraneoplastic antigen like 4 20121230 -9606 64114 TMBIM1 PP1201 LFG3|MST100|MSTP100|RECS1 HGNC:23410|MIM:610364|Ensembl:ENSG00000135926|HPRD:17884|Vega:OTTHUMG00000133105 2 2q35 transmembrane BAX inhibitor motif containing 1 protein-coding TMBIM1 transmembrane BAX inhibitor motif containing 1 O protein lifeguard 3|transmembrane BAX inhibitor motif-containing protein 1 20121230 -9606 64115 C10orf54 RP11-472K8.3 B7-H5|B7H5|GI24|PP2135|SISP1 HGNC:30085|Ensembl:ENSG00000107738|HPRD:15160|Vega:OTTHUMG00000018426 10 10q22.1 chromosome 10 open reading frame 54 protein-coding C10orf54 chromosome 10 open reading frame 54 O platelet receptor Gi24|stress induced secreted protein 1 20121230 -9606 64116 SLC39A8 PP3105 BIGM103|LZT-Hs6|ZIP8 HGNC:20862|MIM:608732|Ensembl:ENSG00000138821|HPRD:12286|Vega:OTTHUMG00000131120 4 4q22-q24 solute carrier family 39 (zinc transporter), member 8 protein-coding SLC39A8 solute carrier family 39 (zinc transporter), member 8 O BCG induced integral membrane protein BIGM103|BCG-induced integral membrane protein in monocyte clone 103 protein|LIV-1 subfamily of ZIP zinc transporter 6|ZIP-8|Zrt- and Irt-like protein 8|solute carrier family 39 (metal ion transporter), member 8|solute carrier family 39 member 8|zinc transporter ZIP8 20121230 -9606 64118 DUS1L - DUS1|PP3111 HGNC:30086|Ensembl:ENSG00000169718|HPRD:17885|Vega:OTTHUMG00000178525 17 17q25.3 dihydrouridine synthase 1-like (S. cerevisiae) protein-coding DUS1L dihydrouridine synthase 1-like (S. cerevisiae) O tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like 20121230 -9606 64121 RRAGC - GTR2|RAGC|TIB929 HGNC:19902|MIM:608267|Ensembl:ENSG00000116954|HPRD:12198|Vega:OTTHUMG00000000490 1 1p34 Ras-related GTP binding C protein-coding RRAGC Ras-related GTP binding C O GTPase-interacting protein 2|Rag C protein|ras-related GTP-binding protein C 20121230 -9606 64122 FN3K - - HGNC:24822|MIM:608425|Ensembl:ENSG00000167363|HPRD:16336|Vega:OTTHUMG00000177847 17 17q25.3 fructosamine 3 kinase protein-coding FN3K fructosamine 3 kinase O fructosamine-3-kinase 20121230 -9606 64123 ELTD1 hCG_14667 ETL|KPG_003 HGNC:20822|Ensembl:ENSG00000162618|Vega:OTTHUMG00000009738 1 1p33-p32 EGF, latrophilin and seven transmembrane domain containing 1 protein-coding ELTD1 EGF, latrophilin and seven transmembrane domain containing 1 O EGF, latrophilin and seven transmembrane domain-containing protein 1|EGF-TM7-latrophilin-related protein 20121230 -9606 64127 NOD2 - ACUG|BLAU|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1 HGNC:5331|MIM:605956|Ensembl:ENSG00000167207|HPRD:05810|Vega:OTTHUMG00000133171 16 16q21 nucleotide-binding oligomerization domain containing 2 protein-coding NOD2 nucleotide-binding oligomerization domain containing 2 O NLR family, CARD domain containing 2|NOD-like receptor C2|caspase recruitment domain family, member 15|caspase recruitment domain protein 15|caspase recruitment domain-containing protein 15|inflammatory bowel disease protein 1|nucleotide-binding oligomerization domain 2|nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 2|nucleotide-binding oligomerization domain-containing protein 2 20121230 -9606 64129 TINAGL1 PP6614 ARG1|LCN7|LIECG3|TINAGRP HGNC:19168|Ensembl:ENSG00000142910|HPRD:07122|Vega:OTTHUMG00000003884 1 1p35.2 tubulointerstitial nephritis antigen-like 1 protein-coding TINAGL1 tubulointerstitial nephritis antigen-like 1 O OLRG-2|P3ECSL|TIN Ag-related protein|TIN-Ag-RP|TINAG-like 1|androgen-regulated gene 1|glucocorticoid-inducible protein 5|lipocalin 7|oxidized-LDL responsive gene 2|tubulointerstitial nephritis antigen-like|tubulointerstitial nephritis antigen-related protein 20121230 -9606 64130 LIN7B UNQ3116/PRO10200 LIN-7B|MALS-2|MALS2|VELI2 HGNC:17788|MIM:612331|Ensembl:ENSG00000104863|HPRD:10040|Vega:OTTHUMG00000134288 19 19q13.3 lin-7 homolog B (C. elegans) protein-coding LIN7B lin-7 homolog B (C. elegans) O hLin7B|hVeli2|mammalian lin-seven protein 2|protein lin-7 homolog B|veli-2|vertebrate lin-7 homolog 2 20121230 -9606 64131 XYLT1 - PXYLT1|XT-I|XT1|XTI|XYLTI HGNC:15516|MIM:608124|Ensembl:ENSG00000103489|HPRD:12168|Vega:OTTHUMG00000129975 16 16p12.3 xylosyltransferase I protein-coding XYLT1 xylosyltransferase I O O-xylosyltransferase 1|beta-D-xylosyltransferase 1|peptide O-xylosyltransferase 1|xylT-I|xylosyltransferase 1|xylosyltransferase iota 20121230 -9606 64132 XYLT2 UNQ3058/PRO9878 PXYLT2|XT-II|XT2|xylT-II HGNC:15517|MIM:608125|Ensembl:ENSG00000015532|HPRD:16286|Vega:OTTHUMG00000162057 17 17q21.33 xylosyltransferase II protein-coding XYLT2 xylosyltransferase II O UDP-D-xylose:proteoglycan core protein beta-D-xylosyltransferase|peptide O-xylosyltransferase 1|protein xylosyltransferase 2|xylosyltransferase 2 20121230 -9606 64135 IFIH1 - Hlcd|IDDM19|MDA-5|MDA5|RLR-2 HGNC:18873|MIM:606951|Ensembl:ENSG00000115267|HPRD:09507|Vega:OTTHUMG00000132055 2 2q24 interferon induced with helicase C domain 1 protein-coding IFIH1 interferon induced with helicase C domain 1 O CADM-140 autoantigen|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide|RIG-I-like receptor 2|RNA helicase-DEAD box protein 116|clinically amyopathic dermatomyositis autoantigen 140 kDa|helicard|helicase with 2 CARD domains|interferon-induced helicase C domain-containing protein 1|melanoma differentiation associated protein-5|melanoma differentiation-associated protein 5|murabutide down-regulated protein 20121230 -9606 64137 ABCG4 - WHITE2 HGNC:13884|MIM:607784|Ensembl:ENSG00000172350|HPRD:12130|Vega:OTTHUMG00000166169 11 11q23.3 ATP-binding cassette, sub-family G (WHITE), member 4 protein-coding ABCG4 ATP-binding cassette, sub-family G (WHITE), member 4 O ATP-binding cassette sub-family G member 4|ATP-binding cassette, subfamily G, member 4|putative ABC transporter 20121230 -9606 64145 ZFYVE20 - Rabenosyn-5 HGNC:20759|MIM:609511|Ensembl:ENSG00000131381|HPRD:15732|Vega:OTTHUMG00000129860 3 3p25.1 zinc finger, FYVE domain containing 20 protein-coding ZFYVE20 zinc finger, FYVE domain containing 20 O 110 kDa protein|FYVE finger-containing Rab5 effector protein rabenosyn-5|FYVE-finger-containing Rab5 effector protein rabenosyn-5|rabenosyn-5|zinc finger FYVE domain-containing protein 20 20121230 -9606 64146 PDF - - HGNC:30012|Ensembl:ENSG00000258429|HPRD:17829|Vega:OTTHUMG00000171336 16 16q22.1 peptide deformylase (mitochondrial) protein-coding PDF peptide deformylase (mitochondrial) O peptide deformylase, mitochondrial|peptide deformylase-like protein|polypeptide deformylase 20121230 -9606 64147 KIF9 - - HGNC:16666|MIM:607910|Ensembl:ENSG00000088727|HPRD:07444|Vega:OTTHUMG00000133512 3 3p21.31 kinesin family member 9 protein-coding KIF9 kinesin family member 9 O kinesin protein 9|kinesin-like protein KIF9 20121230 -9606 64149 C17orf75 - NJMU-R1 HGNC:30173|Ensembl:ENSG00000108666|HPRD:11392|Vega:OTTHUMG00000179585 17 17q11.2 chromosome 17 open reading frame 75 protein-coding C17orf75 chromosome 17 open reading frame 75 O protein Njmu-R1|spermatogenesis-related protein 20121230 -9606 64150 DIO3OS - C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 HGNC:20348|MIM:608523 14 14q32.31 DIO3 opposite strand/antisense RNA (head to head) miscRNA DIO3OS DIO3 opposite strand/antisense RNA (head to head) O - 20121230 -9606 64151 NCAPG - CAPG|CHCG|NY-MEL-3 HGNC:24304|MIM:606280|Ensembl:ENSG00000109805|HPRD:12097|Vega:OTTHUMG00000128539 4 4p15.33 non-SMC condensin I complex, subunit G protein-coding NCAPG non-SMC condensin I complex, subunit G O XCAP-G homolog|chromosome condensation protein G|chromosome-associated protein G|condensin complex subunit 3|condensin subunit CAP-G|melanoma antigen NY-MEL-3 20121230 -9606 64167 ERAP2 - L-RAP|LRAP HGNC:29499|MIM:609497|Ensembl:ENSG00000164308|HPRD:14306|Vega:OTTHUMG00000128718 5 5q15 endoplasmic reticulum aminopeptidase 2 protein-coding ERAP2 endoplasmic reticulum aminopeptidase 2 O leukocyte-derived arginine aminopeptidase 20121230 -9606 64168 NECAB1 - EFCBP1|STIP-1 HGNC:20983|Ensembl:ENSG00000123119|HPRD:16851|Vega:OTTHUMG00000164009 8 8q21.3 N-terminal EF-hand calcium binding protein 1 protein-coding NECAB1 N-terminal EF-hand calcium binding protein 1 O EF hand calcium binding protein 1|EF-hand calcium binding protein 1|EF-hand calcium-binding protein 1|N-terminal EF-hand calcium-binding protein 1|neuronal calcium binding protein|neuronal calcium-binding protein 1|synaptotagmin interacting protein 1 20121230 -9606 64170 CARD9 RP11-413M3.9 CANDF2|hCARD9 HGNC:16391|MIM:607212|Ensembl:ENSG00000187796|HPRD:06236|Vega:OTTHUMG00000020925 9 9q34.3 caspase recruitment domain family, member 9 protein-coding CARD9 caspase recruitment domain family, member 9 O caspase recruitment domain-containing protein 9 20121230 -9606 64172 OSGEPL1 - Qri7 HGNC:23075|Ensembl:ENSG00000128694|HPRD:07026|Vega:OTTHUMG00000164096 2 2q32.2 O-sialoglycoprotein endopeptidase-like 1 protein-coding OSGEPL1 O-sialoglycoprotein endopeptidase-like 1 O O-sialoglycoprotein endopeptidase like 1|O-sialoglycoprotein endopeptidase-like protein 1|probable O-sialoglycoprotein endopeptidase 2|probable tRNA threonylcarbamoyladenosine biosynthesis protein OSGEPL1|putative sialoglycoprotease type 2|t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEPL1 20121230 -9606 64174 DPEP2 UNQ284/PRO323 MBD2 HGNC:23028|MIM:609925|Ensembl:ENSG00000167261|HPRD:07011|Vega:OTTHUMG00000137542 16 16q22.1 dipeptidase 2 protein-coding DPEP2 dipeptidase 2 O - 20121230 -9606 64175 LEPRE1 PSEC0109 GROS1|OI8|P3H1 HGNC:19316|MIM:610339|Ensembl:ENSG00000117385|HPRD:11227|Vega:OTTHUMG00000007525 1 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 protein-coding LEPRE1 leucine proline-enriched proteoglycan (leprecan) 1 O growth suppressor 1|leprecan|leucine- and proline-enriched proteoglycan 1|prolyl 3-hydroxylase 1 20121230 -9606 64180 DPEP3 UNQ834/PRO1772 MBD3 HGNC:23029|MIM:609926|Ensembl:ENSG00000141096|HPRD:07012|Vega:OTTHUMG00000137544 16 16q22.1 dipeptidase 3 protein-coding DPEP3 dipeptidase 3 O membrane-bound dipeptidase 3|metallopeptidase (family M19) 20121230 -9606 64184 EDDM3B UNQ6412/PRO21187 EP3B|FAM12B|HE3-BETA|HE3B HGNC:19223|MIM:611582|Ensembl:ENSG00000181552|HPRD:13290|Vega:OTTHUMG00000029583 14 14q11.2 epididymal protein 3B protein-coding EDDM3B epididymal protein 3B O epididymal secretory protein E3 beta|epididymal secretory protein E3-beta|family with sequence similarity 12, member B (epididymal)|human epididymis-specific 3 beta|human epididymis-specific protein 3-beta 20121230 -9606 64207 IRF2BPL My039 C14orf4|EAP1 HGNC:14282|MIM:611720|Ensembl:ENSG00000119669|HPRD:10713|Vega:OTTHUMG00000171578 14 14q24.3 interferon regulatory factor 2 binding protein-like protein-coding IRF2BPL interferon regulatory factor 2 binding protein-like O enhanced at puberty 1|enhanced at puberty protein 1|interferon regulatory factor 2-binding protein-like 20121230 -9606 64208 POPDC3 RP11-355M14.1 POP3|RP11-99L11.2|bA355M14.1 HGNC:17649|MIM:605824|Ensembl:ENSG00000132429|HPRD:16161|Vega:OTTHUMG00000015293 6 6q21 popeye domain containing 3 protein-coding POPDC3 popeye domain containing 3 O popeye domain-containing protein 3|popeye protein 3 20121230 -9606 64210 MMS19 RP11-452K12.5 MET18|MMS19L|hMMS19 HGNC:13824|MIM:614777|Ensembl:ENSG00000155229|HPRD:17579|Vega:OTTHUMG00000018857 10 10q24-q25 MMS19 nucleotide excision repair homolog (S. cerevisiae) protein-coding MMS19 MMS19 nucleotide excision repair homolog (S. cerevisiae) O MET18 homolog|MMS19 nucleotide excision repair protein homolog|MMS19-like (MET18 homolog, S. cerevisiae)|MMS19-like protein|homolog of yeast MMS19 20121230 -9606 64211 LHX5 - - HGNC:14216|MIM:605992|Ensembl:ENSG00000089116|HPRD:09344|Vega:OTTHUMG00000169552 12 12q24 LIM homeobox 5 protein-coding LHX5 LIM homeobox 5 O LIM homeobox protein 5|LIM/homeobox protein Lhx5 20121230 -9606 64215 DNAJC1 RP11-399C16.1 DNAJL1|ERdj1|HTJ1|MTJ1 HGNC:20090|MIM:611207|Ensembl:ENSG00000136770|HPRD:09922|Vega:OTTHUMG00000017800 10 10p12.31 DnaJ (Hsp40) homolog, subfamily C, member 1 protein-coding DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 O DnaJ-like protein|dnaJ homolog subfamily C member 1|dnaJ protein homolog MTJ1 20121230 -9606 64216 TFB2M - Hkp1|mtTFB2 HGNC:18559|MIM:607055|Ensembl:ENSG00000162851|HPRD:09520|Vega:OTTHUMG00000040091 1 1q44 transcription factor B2, mitochondrial protein-coding TFB2M transcription factor B2, mitochondrial O HCV NS5A-transactivated protein 5|S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 2|dimethyladenosine transferase 2, mitochondrial|h-mtTFB|h-mtTFB2|hTFB2M|hepatitis C virus NS5A-transactivated protein 5|mitochondrial 12S rRNA dimethylase 2|mitochondrial transcription factor B2 20121230 -9606 64218 SEMA4A RP11-54H19.2 CORD10|RP35|SEMAB|SEMB HGNC:10729|MIM:607292|Ensembl:ENSG00000196189|HPRD:09528|Vega:OTTHUMG00000014042 1 1q22 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A protein-coding SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A O sema B|semaphorin-4A|semaphorin-B 20121230 -9606 64219 PJA1 RP13-55H22.1 PRAJA1|RNF70 HGNC:16648|MIM:300420|Ensembl:ENSG00000181191|HPRD:02335|Vega:OTTHUMG00000021753 X Xq13.1 praja ring finger 1, E3 ubiquitin protein ligase protein-coding PJA1 praja ring finger 1, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase Praja-1|RING finger protein 70|praja 1 20121230 -9606 64220 STRA6 PP14296 MCOPCB8|MCOPS9 HGNC:30650|MIM:610745|Ensembl:ENSG00000137868|HPRD:18122|Vega:OTTHUMG00000138998 15 15q24.1 stimulated by retinoic acid 6 protein-coding STRA6 stimulated by retinoic acid 6 O stimulated by retinoic acid 6 homolog|stimulated by retinoic acid gene 6 homolog|stimulated by retinoic acid gene 6 protein homolog 20121230 -9606 64221 ROBO3 - HGPPS|HGPS|RBIG1|RIG1 HGNC:13433|MIM:608630|Ensembl:ENSG00000154134|HPRD:10554|Vega:OTTHUMG00000165934 11 11q24.2 roundabout, axon guidance receptor, homolog 3 (Drosophila) protein-coding ROBO3 roundabout, axon guidance receptor, homolog 3 (Drosophila) O retinoblastoma inhibiting gene 1|roundabout homolog 3|roundabout-like protein 3 20121230 -9606 64222 TOR3A RP11-177A2.2 ADIR|ADIR2 HGNC:11997|MIM:607555|Ensembl:ENSG00000186283|HPRD:09615|Vega:OTTHUMG00000035077 1 1q25.2 torsin family 3, member A protein-coding TOR3A torsin family 3, member A O ATP-dependant interferon response protein 1|ATP-dependant interferon responsive|ATP-dependent interferon-responsive protein|torsin-3A 20121230 -9606 64223 MLST8 - GBL|GbetaL|LST8|POP3|WAT1 HGNC:24825|MIM:612190|Ensembl:ENSG00000167965|HPRD:17031|Vega:OTTHUMG00000128827 16 16p13.3 MTOR associated protein, LST8 homolog (S. cerevisiae) protein-coding MLST8 MTOR associated protein, LST8 homolog (S. cerevisiae) O TORC subunit LST8|gable|mammalian lethal with SEC13 protein 8|protein GbetaL|target of rapamycin complex subunit LST8 20121230 -9606 64224 HERPUD2 - - HGNC:21915|Ensembl:ENSG00000122557|HPRD:07984|Vega:OTTHUMG00000128687 7 7p14.2 HERPUD family member 2 protein-coding HERPUD2 HERPUD family member 2 O homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 2|homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein 20121230 -9606 64225 ATL2 - ARL3IP2|ARL6IP2|atlastin2 HGNC:24047|MIM:609368|Ensembl:ENSG00000119787|HPRD:10662|Vega:OTTHUMG00000102074 2 2p22.3 atlastin GTPase 2 protein-coding ATL2 atlastin GTPase 2 O ADP-ribosylation factor-like 6 interacting protein 2|ADP-ribosylation factor-like protein 6-interacting protein 2|ADP-ribosylation-like factor 6 interacting protein 2|ARL-6-interacting protein 2|aip-2|atlastin-2 20121230 -9606 64227 ERP29P1 - ERP28P HGNC:24625 20 20q13.2 endoplasmic reticulum lumenal protein 29 pseudogene 1 pseudo ERP29P1 endoplasmic reticulum lumenal protein 29 pseudogene 1 O - 20121230 -9606 64231 MS4A6A CDA01 4SPAN3|4SPAN3.2|CD20L3|MS4A6|MST090|MSTP090 HGNC:13375|MIM:606548|Ensembl:ENSG00000110077|HPRD:09414|Vega:OTTHUMG00000167241 11 11q12.1 membrane-spanning 4-domains, subfamily A, member 6A protein-coding MS4A6A membrane-spanning 4-domains, subfamily A, member 6A O CD20 antigen-like 3|CD20-like precusor|HAIRB-iso|MS4A6A-polymorph|four-span transmembrane protein 3|four-span transmembrane protein 3.1|four-span transmembrane protein 3.2|membrane-spanning 4-domains subfamily A member 6A 20121230 -9606 64232 MS4A5 - CD20-L2|CD20L2|TETM4 HGNC:13374|MIM:606499|Ensembl:ENSG00000166930|HPRD:07578|Vega:OTTHUMG00000167613 11 11q12 membrane-spanning 4-domains, subfamily A, member 5 protein-coding MS4A5 membrane-spanning 4-domains, subfamily A, member 5 O CD20 antigen-like 2|membrane-spanning 4-domains subfamily A member 5|testis-expressed transmembrane protein 4|testis-expressed transmembrane-4 protein 20121230 -9606 64236 PDLIM2 PP6345 MYSTIQUE|SLIM HGNC:13992|MIM:609722|Ensembl:ENSG00000120913|HPRD:17831|Vega:OTTHUMG00000164270 8 8p21.3 PDZ and LIM domain 2 (mystique) protein-coding PDLIM2 PDZ and LIM domain 2 (mystique) O PDZ and LIM domain protein 2 20121230 -9606 64239 RSCIS - - MIM:605463 14 14q11.2 Radiation sensitivity/chromosome instability syndrome, autosomal dominant unknown - - - - 20120622 -9606 64240 ABCG5 - STSL HGNC:13886|MIM:605459|Ensembl:ENSG00000138075|HPRD:05678|Vega:OTTHUMG00000128758 2 2p21 ATP-binding cassette, sub-family G (WHITE), member 5 protein-coding ABCG5 ATP-binding cassette, sub-family G (WHITE), member 5 O ATP-binding cassette sub-family G member 5|ATP-binding cassette, subfamily G, member 5|sterolin 1|sterolin-1 20121230 -9606 64241 ABCG8 - GBD4|STSL HGNC:13887|MIM:605460|Ensembl:ENSG00000143921|HPRD:05679|Vega:OTTHUMG00000128756 2 2p21 ATP-binding cassette, sub-family G (WHITE), member 8 protein-coding ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 O ATP-binding cassette sub-family G member 8|ATP-binding cassette, subfamily G, member 8|sterolin 2|sterolin-2 20121230 -9606 64282 PAPD5 - TRF4-2 HGNC:30758|MIM:605540|Ensembl:ENSG00000121274|HPRD:16119|Vega:OTTHUMG00000173452 16 16q12.1 PAP associated domain containing 5 protein-coding PAPD5 PAP associated domain containing 5 O PAP-associated domain-containing protein 5|TUTase 3|terminal uridylyltransferase 3|topoisomerase-related function protein 4-2 20121230 -9606 64283 ARHGEF28 - RGNEF|RIP2|p190RHOGEF HGNC:30322|MIM:612790|Ensembl:ENSG00000214944|Vega:OTTHUMG00000162454 5 5q13.2 Rho guanine nucleotide exchange factor (GEF) 28 protein-coding ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 O 190 kDa guanine nucleotide exchange factor|Rho interacting protein 2|p190-RhoGEF|rho guanine nucleotide exchange factor 28|rho-guanine nucleotide exchange factor 20121230 -9606 64284 RAB17 - - HGNC:16523|MIM:602206|Ensembl:ENSG00000124839|HPRD:11468|Vega:OTTHUMG00000133299 2 2q37.3 RAB17, member RAS oncogene family protein-coding RAB17 RAB17, member RAS oncogene family O ras-related protein Rab-17 20121230 -9606 64285 RHBDF1 - C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1 HGNC:20561|MIM:614403|HPRD:07027 16 16p13.3 rhomboid 5 homolog 1 (Drosophila) protein-coding RHBDF1 rhomboid 5 homolog 1 (Drosophila) O epidermal growth factor receptor, related sequence|epidermal growth factor receptor-related protein|iRhom1|inactive rhomboid protein 1|p100hRho|rhomboid family 1|rhomboid family member 1 20121230 -9606 64288 ZNF323 - ZNF20-Lp|ZNF310P|dJ874C20.2 HGNC:14097|MIM:610794|Ensembl:ENSG00000235109|HPRD:15772|Vega:OTTHUMG00000014518 6 6p21.31|6p22.3-p22.1 zinc finger protein 323 protein-coding ZNF323 zinc finger protein 323 O zinc finger protein 310 pseudogene 20121230 -9606 64318 NOC3L - AD24|C10orf117|FAD24 HGNC:24034|MIM:610769|Ensembl:ENSG00000173145|HPRD:12562|Vega:OTTHUMG00000018788 10 10q23.33 nucleolar complex associated 3 homolog (S. cerevisiae) protein-coding NOC3L nucleolar complex associated 3 homolog (S. cerevisiae) O NOC3 protein homolog|NOC3-like protein|factor for adipocyte differentiation 24|nucleolar complex protein 3 homolog|nucleolar complex-associated protein 3-like protein 20121230 -9606 64319 FBRS - FBS|FBS1 HGNC:20442|MIM:608601|Ensembl:ENSG00000156860|HPRD:16354 16 16p11.2 fibrosin protein-coding FBRS fibrosin O fibrogenic lymphokine|fibrosin 1|probable fibrosin-1|probable fibrosin-1 long transcript protein 20121230 -9606 64320 RNF25 - AO7 HGNC:14662|Ensembl:ENSG00000163481|HPRD:09737|Vega:OTTHUMG00000133077 2 2q35 ring finger protein 25 protein-coding RNF25 ring finger protein 25 O E3 ubiquitin-protein ligase RNF25|ring finger protein AO7 20121230 -9606 64321 SOX17 - VUR3 HGNC:18122|MIM:610928|Ensembl:ENSG00000164736|HPRD:18085|Vega:OTTHUMG00000164377 8 8q11.23 SRY (sex determining region Y)-box 17 protein-coding SOX17 SRY (sex determining region Y)-box 17 O SRY-related HMG-box transcription factor SOX17|transcription factor SOX-17 20121230 -9606 64324 NSD1 - ARA267|KMT3B|SOTOS|SOTOS1|STO HGNC:14234|MIM:606681|Ensembl:ENSG00000165671|HPRD:09455|Vega:OTTHUMG00000130846 5 5q35 nuclear receptor binding SET domain protein 1 protein-coding NSD1 nuclear receptor binding SET domain protein 1 O H3-K36-HMTase|H4-K20-HMTase|NR-binding SET domain-containing protein|androgen receptor coactivator 267 kDa protein|androgen receptor-associated coregulator 267|androgen receptor-associated protein of 267 kDa|histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific|lysine N-methyltransferase 3B|nuclear receptor-binding SET domain-containing protein 1 20121230 -9606 64326 RFWD2 RP11-318C24.3 COP1|RNF200 HGNC:17440|MIM:608067|Ensembl:ENSG00000143207|HPRD:07455|Vega:OTTHUMG00000034986 1 1q25.1-q25.2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase protein-coding RFWD2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RFWD2|RING finger and WD repeat domain protein 2|RING finger protein 200|constitutive photomorphogenesis protein 1 homolog|constitutive photomorphogenic protein (COP1)|hCOP1|putative ubiquitin ligase COP1 20121230 -9606 64327 LMBR1 tcag7.573 ACHP|C7orf2|DIF14|PPD2|TPT HGNC:13243|MIM:605522|Ensembl:ENSG00000105983|HPRD:05700|Vega:OTTHUMG00000151510 7 7q36 limb region 1 homolog (mouse) protein-coding LMBR1 limb region 1 homolog (mouse) O differentiation-related gene 14 protein|limb region 1 protein homolog 20121230 -9606 64328 XPO4 - exp4 HGNC:17796|MIM:611449|Ensembl:ENSG00000132953|HPRD:18307|Vega:OTTHUMG00000016528 13 13q11 exportin 4 protein-coding XPO4 exportin 4 O exportin-4 20121230 -9606 64332 NFKBIZ - IKBZ|INAP|MAIL HGNC:29805|MIM:608004|Ensembl:ENSG00000144802|HPRD:09217|Vega:OTTHUMG00000159194 3 3p12-q12 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta O I-kappa-B-zeta|IL-1 inducible nuclear ankyrin-repeat protein|Ikappa B-zeta variant 3|IkappaB-zeta|NF-kappa-B inhibitor zeta|ikB-zeta|ikappaBzeta|molecule possessing ankyrin repeats induced by lipopolysaccharide 20121230 -9606 64333 ARHGAP9 - 10C|RGL1 HGNC:14130|MIM:610576|Ensembl:ENSG00000123329|HPRD:06449|Vega:OTTHUMG00000150147 12 12q13.3 Rho GTPase activating protein 9 protein-coding ARHGAP9 Rho GTPase activating protein 9 O rho GTPase-activating protein 9|rho-type GTPase-activating protein 9 20121230 -9606 64342 HS1BP3 - ETM2|HS1-BP3 HGNC:24979|MIM:609359|Ensembl:ENSG00000118960|HPRD:13357|Vega:OTTHUMG00000122099 2 2p24.1 HCLS1 binding protein 3 protein-coding HS1BP3 HCLS1 binding protein 3 O HCLS1-binding protein 3|HS1-binding protein 3|HSP1BP-3 20121230 -9606 64343 AZI2 - AZ2|NAP1|TILP HGNC:24002|MIM:609916|Ensembl:ENSG00000163512|HPRD:10577|Vega:OTTHUMG00000130573 3 3p24.1 5-azacytidine induced 2 protein-coding AZI2 5-azacytidine induced 2 O 5-azacytidine induced gene 2|5-azacytidine-induced protein 2|NAK-associated protein 1|NF-kappa-B-activating kinase-associated protein 1 20121230 -9606 64344 HIF3A - HIF-3A|IPAS|MOP7|PASD7|bHLHe17 HGNC:15825|MIM:609976|Ensembl:ENSG00000124440|HPRD:17104|Vega:OTTHUMG00000141296 19 19q13.32 hypoxia inducible factor 3, alpha subunit protein-coding HIF3A hypoxia inducible factor 3, alpha subunit O HIF3-alpha-1|PAS domain-containing protein 7|basic-helix-loop-helix-PAS protein MOP7|class E basic helix-loop-helix protein 17|hypoxia-inducible factor 3-alpha|inhibitory PAS domain protein|member of PAS protein 7 20121230 -9606 64359 NXN - NRX|TRG-4 HGNC:18008|MIM:612895|Ensembl:ENSG00000167693|HPRD:14858|Vega:OTTHUMG00000090307 17 17p13.3 nucleoredoxin protein-coding NXN nucleoredoxin O nucleoredoxin 1 20121230 -9606 64374 SIL1 UNQ545/PRO836 BAP|MSS|ULG5 HGNC:24624|MIM:608005|Ensembl:ENSG00000120725|HPRD:12150|Vega:OTTHUMG00000129226 5 5q31 SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae) protein-coding SIL1 SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae) O BiP-associated protein|nucleotide exchange factor SIL1 20121230 -9606 64375 IKZF4 - EOS|ZNFN1A4 HGNC:13179|MIM:606239|Ensembl:ENSG00000123411|HPRD:05874|Vega:OTTHUMG00000170132 12 12q13 IKAROS family zinc finger 4 (Eos) protein-coding IKZF4 IKAROS family zinc finger 4 (Eos) O ikaros family zinc finger protein 4|zinc finger protein Eos|zinc finger protein, subfamily 1A, 4 (Eos)|zinc finger transcription factor Eos 20121230 -9606 64376 IKZF5 - PEGASUS|ZNFN1A5 HGNC:14283|MIM:606238|Ensembl:ENSG00000095574|HPRD:05873|Vega:OTTHUMG00000019192 10 10q26 IKAROS family zinc finger 5 (Pegasus) protein-coding IKZF5 IKAROS family zinc finger 5 (Pegasus) O zinc finger protein Pegasus|zinc finger protein, subfamily 1A, 5 (Pegasus)|zinc finger transcription factor Pegasus 20121230 -9606 64377 CHST8 - GALNAC4ST1|GalNAc4ST HGNC:15993|MIM:610190|Ensembl:ENSG00000124302|HPRD:07632|Vega:OTTHUMG00000180472 19 19q13.1 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 protein-coding CHST8 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 O GALNAC-4-ST1|GalNAc-4-O-sulfotransferase 1|N-acetylgalactosamine-4-O-sulfotransferase 1|carbohydrate sulfotransferase 8|galNAc4ST-1 20121230 -9606 64386 MMP25 - MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6 HGNC:14246|MIM:608482|Ensembl:ENSG00000008516|HPRD:07090|HPRD:07492|Vega:OTTHUMG00000177475 16 16p13.3 matrix metallopeptidase 25 protein-coding MMP25 matrix metallopeptidase 25 O leukolysin|matrix metallopeptidase-like 1|matrix metalloproteinase 20|matrix metalloproteinase 25|matrix metalloproteinase-25|matrix metalloproteinase-like 1|membrane-type 6 matrix metalloproteinase|membrane-type matrix metalloproteinase 6|membrane-type-6 matrix metalloproteinase 20121230 -9606 64388 GREM2 - CKTSF1B2|DAND3|PRDC HGNC:17655|MIM:608832|Ensembl:ENSG00000180875|HPRD:16390|Vega:OTTHUMG00000039909 1 1q43 gremlin 2 protein-coding GREM2 gremlin 2 O DAN domain family member 3|cysteine knot superfamily 1, BMP antagonist 2|gremlin 2, cysteine knot superfamily, homolog|gremlin-2|protein related to DAN and cerberus 20121230 -9606 64393 ZMAT3 - PAG608|WIG-1|WIG1 HGNC:29983|MIM:606452|Ensembl:ENSG00000172667|HPRD:07343|Vega:OTTHUMG00000157290 3 3q26.32 zinc finger, matrin-type 3 protein-coding ZMAT3 zinc finger, matrin-type 3 O WIG-1/PAG608 protein|p53 target zinc finger protein|p53-activated gene 608 protein|zinc finger matrin-type protein 3|zinc finger protein WIG-1|zinc finger protein WIG1|zinc finger, matrin type 3 20121230 -9606 64395 GMCL1 - BTBD13|GCL|GCL1|SPATA29 HGNC:23843|Ensembl:ENSG00000087338|HPRD:13587|Vega:OTTHUMG00000129643 2 2p13.3 germ cell-less, spermatogenesis associated 1 protein-coding GMCL1 germ cell-less, spermatogenesis associated 1 O germ cell-less homolog 1|germ cell-less protein-like 1|spermatogenesis associated 29 20121230 -9606 64396 GMCL1P1 - GCL|GMCL1L|GMCL2 HGNC:19717|HPRD:17044 5 5q35.3 germ cell-less, spermatogenesis associated 1 pseudogene 1 pseudo GMCL1P1 germ cell-less, spermatogenesis associated 1 pseudogene 1 O - 20121230 -9606 64397 ZFP106 - SH3BP3|ZNF474 HGNC:23240|Ensembl:ENSG00000103994|HPRD:10317|Vega:OTTHUMG00000173244 15 15q15.1 zinc finger protein 106 homolog (mouse) protein-coding ZFP106 zinc finger protein 106 homolog (mouse) O SH3-domain binding protein 3|zfp-106|zinc finger protein 106 homolog|zinc finger protein 474 20121230 -9606 64398 MPP5 - PALS1 HGNC:18669|MIM:606958|Ensembl:ENSG00000072415|HPRD:09508|Vega:OTTHUMG00000171243 14 14q23.3 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) protein-coding MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) O MAGUK p55 subfamily member 5|protein associated with lin seven 1|stardust 20121230 -9606 64399 HHIP UNQ5825/PRO19644 HIP HGNC:14866|MIM:606178|Ensembl:ENSG00000164161|HPRD:06937|Vega:OTTHUMG00000161428 4 4q28-q32 hedgehog interacting protein protein-coding HHIP hedgehog interacting protein O hedgehog-interacting protein 20121230 -9606 64400 AKTIP - FT1|FTS HGNC:16710|MIM:608483|Ensembl:ENSG00000166971|HPRD:07467|Vega:OTTHUMG00000133199 16 16q12.2 AKT interacting protein protein-coding AKTIP AKT interacting protein O AKT-interacting protein|fused toes homolog|fused toes protein homolog 20121230 -9606 64403 CDH24 UNQ2834/PRO34009 CDH11L HGNC:14265|Ensembl:ENSG00000139880|HPRD:13019|Vega:OTTHUMG00000028715 14 14q11.2 cadherin 24, type 2 protein-coding CDH24 cadherin 24, type 2 O cadherin-24|cadherin-like 24 20121230 -9606 64405 CDH22 - C20orf25|dJ998H6.1 HGNC:13251|MIM:609920|Ensembl:ENSG00000149654|HPRD:13018|Vega:OTTHUMG00000033073 20 20q13.1 cadherin 22, type 2 protein-coding CDH22 cadherin 22, type 2 O PB-cadherin|cadherin-22|cadherin-like 22|ortholog of rat PB-cadherin|pituitary and brain cadherin 20121230 -9606 64407 RGS18 RP11-142L4.1 RGS13 HGNC:14261|MIM:607192|Ensembl:ENSG00000150681|HPRD:06224|Vega:OTTHUMG00000035592 1 1q31.2 regulator of G-protein signaling 18 protein-coding RGS18 regulator of G-protein signaling 18 O regulator of G-protein signalling 13|regulator of G-protein signalling 18 20121230 -9606 64409 WBSCR17 - GALNT16|GALNT20|GALNTL3 HGNC:16347|Ensembl:ENSG00000185274|HPRD:15655|Vega:OTTHUMG00000129783 7 7q11.23 Williams-Beuren syndrome chromosome region 17 protein-coding WBSCR17 Williams-Beuren syndrome chromosome region 17 O UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like 3|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 3|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16|galNAc-T-like protein 3|polypeptide GalNAc transferase-like protein 3|polypeptide N-acetylgalactosaminyltransferase WBSCR17|pp-GaNTase-like protein 3|pp-GalNAc-transferase 20|protein-UDP acetylgalactosaminyltransferase-like protein 3|putative polypeptide N-acetylgalactosaminyltransferase-like protein 3|williams-Beuren syndrome chromosomal region 17 protein 20121230 -9606 64410 KLHL25 - ENC-2|ENC2 HGNC:25732|Ensembl:ENSG00000183655|HPRD:07780|Vega:OTTHUMG00000148672 15 15q25.3 kelch-like 25 (Drosophila) protein-coding KLHL25 kelch-like 25 (Drosophila) O BTB/POZ KELCH domain protein|ectoderm-neural cortex protein 2|ectodermal-neural cortex 2|kelch-like protein 25 20121230 -9606 64411 ARAP3 - CENTD3|DRAG1 HGNC:24097|MIM:606647|Ensembl:ENSG00000120318|HPRD:09441|Vega:OTTHUMG00000129610 5 5q31.3 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding ARAP3 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 O ARF-GAP, RHO-GAP, ankyrin repeat and plekstrin homology domains-containing protein 3|Arf and Rho GAP adapter protein 3|PtdIns(3,4,5)P3-binding protein|arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3|centaurin, delta 3|centaurin-delta-3|cnt-d3|phosphoinositide binding protein 20121230 -9606 64412 GZF1 RP3-322G13.10-004 ZBTB23|ZNF336 HGNC:15808|MIM:613842|Ensembl:ENSG00000125812|HPRD:15778|Vega:OTTHUMG00000032069 20 20p11.21 GDNF-inducible zinc finger protein 1 protein-coding GZF1 GDNF-inducible zinc finger protein 1 O zinc finger and BTB domain-containing protein 23|zinc finger protein 336 20121230 -9606 64417 C5orf28 - - HGNC:26139|Ensembl:ENSG00000151881|HPRD:07965|Vega:OTTHUMG00000131150 5 5p12 chromosome 5 open reading frame 28 protein-coding C5orf28 chromosome 5 open reading frame 28 O transmembrane protein C5orf28 20121230 -9606 64418 TMEM168 - - HGNC:25826|Ensembl:ENSG00000146802|HPRD:07831|Vega:OTTHUMG00000155188 7 7q31.32 transmembrane protein 168 protein-coding TMEM168 transmembrane protein 168 O - 20121230 -9606 64419 MTMR14 - C3orf29 HGNC:26190|MIM:611089|Ensembl:ENSG00000163719|HPRD:08654|Vega:OTTHUMG00000155111 3 3p26 myotubularin related protein 14 protein-coding MTMR14 myotubularin related protein 14 O HCV NS5A-transactivated protein 4 splice variant A-binding protein 1|NS5ATP4ABP1|egg-derived tyrosine phosphatase homolog|jumpy|myotubularin-related protein 14 20121230 -9606 64420 SUSD1 RP11-4O1.1 - HGNC:25413|Ensembl:ENSG00000106868|HPRD:15452|Vega:OTTHUMG00000020499 9 9q31.3-q33.1 sushi domain containing 1 protein-coding SUSD1 sushi domain containing 1 O sushi domain-containing protein 1 20121230 -9606 64421 DCLRE1C RP11-398C13.5 A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C|hSNM1C HGNC:17642|MIM:605988|Ensembl:ENSG00000152457|HPRD:05817|Vega:OTTHUMG00000017716 10 10p13 DNA cross-link repair 1C protein-coding DCLRE1C DNA cross-link repair 1C O DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae)|DNA cross-link repair 1C protein|PSO2 homolog|SNM1 homolog C|SNM1-like protein|protein artemis|severe combined immunodeficiency, type a (Athabascan) 20121230 -9606 64422 ATG3 - APG3|APG3-LIKE|APG3L|PC3-96 HGNC:20962|MIM:609606|Ensembl:ENSG00000144848|HPRD:10654|Vega:OTTHUMG00000159260 3 3q13.2 autophagy related 3 protein-coding ATG3 autophagy related 3 O 2610016C12Rik|ATG3 autophagy related 3 homolog|autophagy-related protein 3|hApg3|ubiquitin-like-conjugating enzyme ATG3 20121230 -9606 64423 INF2 hCG_2029577 C14orf151|C14orf173|CMTDIE|FSGS5|pp9484 HGNC:23791|MIM:610982|Ensembl:ENSG00000203485|HPRD:08648|Vega:OTTHUMG00000029811 14 14q32.33 inverted formin, FH2 and WH2 domain containing protein-coding INF2 inverted formin, FH2 and WH2 domain containing O HBEAG-binding protein 2 binding protein C|HBEBP2-binding protein C|inverted formin-2 20121230 -9606 64425 POLR1E - PAF53|PRAF1|RP11-405L18.3 HGNC:17631|Ensembl:ENSG00000137054|HPRD:15096|Vega:OTTHUMG00000019920 9 9p13.2 polymerase (RNA) I polypeptide E, 53kDa protein-coding POLR1E polymerase (RNA) I polypeptide E, 53kDa O DNA-directed RNA polymerase I subunit E|DNA-directed RNA polymerase I subunit RPA49|RNA polymerase I associated factor 53|RNA polymerase I subunit A49|RNA polymerase I-associated factor 1|RNA polymerase I-associated factor 53|polymerase (RNA) I associated factor 1 20121230 -9606 64426 SUDS3 - SAP45|SDS3 HGNC:29545|MIM:608250|Ensembl:ENSG00000111707|HPRD:12196|Vega:OTTHUMG00000168884 12 12q24.23 suppressor of defective silencing 3 homolog (S. cerevisiae) protein-coding SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae) O 45 kDa Sin3-associated polypeptide|sin3 histone deacetylase corepressor complex component SDS3|sin3A-associated protein, 45kDa|suppressor of defective silencing 3 protein homolog 20121230 -9606 64427 TTC31 - - HGNC:25759|Ensembl:ENSG00000115282|HPRD:07797|Vega:OTTHUMG00000152887 2 2p13.1 tetratricopeptide repeat domain 31 protein-coding TTC31 tetratricopeptide repeat domain 31 O TPR repeat protein 31|tetratricopeptide repeat protein 31 20121230 -9606 64428 NARFL LA16c-444G9.3 HPRN|IOP1|LET1L|PRN HGNC:14179|MIM:611118|Ensembl:ENSG00000103245|HPRD:14810|Vega:OTTHUMG00000122093 16 16p13.3 nuclear prelamin A recognition factor-like protein-coding NARFL nuclear prelamin A recognition factor-like O LET1 like/JFP15|cytosolic Fe-S cluster assembly factor NARFL|iron-only hydrogenase-like protein 1|nuclear prelamin A recognition factor-like protein|protein related to Narf 20121230 -9606 64429 ZDHHC6 - ZNF376 HGNC:19160|Ensembl:ENSG00000023041|HPRD:15721|Vega:OTTHUMG00000019062 10 10q25.2 zinc finger, DHHC-type containing 6 protein-coding ZDHHC6 zinc finger, DHHC-type containing 6 O DHHC-6|palmitoyltransferase ZDHHC6|probable palmitoyltransferase ZDHHC6|transmembrane protein H4|zinc finger DHHC domain-containing protein 6|zinc finger protein 376|zinc finger, DHHC domain containing 6 20121230 -9606 64430 PCNXL4 - C14orf135|FBP2 HGNC:20349|Ensembl:ENSG00000126773|HPRD:16604|Vega:OTTHUMG00000150361 14 14q23.1 pecanex-like 4 (Drosophila) protein-coding PCNXL4 pecanex-like 4 (Drosophila) O HCV F protein-binding protein 2|HCV F-interacting protein|hepatitis C virus F protein-binding protein 2|pecanex-like protein 4|pecanex-like protein C14orf135 20121230 -9606 64431 ACTR6 CDA12 ARP6|HSPC281|MSTP136|hARP6|hARPX HGNC:24025|Ensembl:ENSG00000075089|HPRD:12421|Vega:OTTHUMG00000170245 12 12q23.1 ARP6 actin-related protein 6 homolog (yeast) protein-coding ACTR6 ARP6 actin-related protein 6 homolog (yeast) O actin-related protein 6 20121230 -9606 64432 MRPS25 - MRP-S25|RPMS25 HGNC:14511|MIM:611987|Ensembl:ENSG00000131368|HPRD:17594|Vega:OTTHUMG00000129836 3 3p25 mitochondrial ribosomal protein S25 protein-coding MRPS25 mitochondrial ribosomal protein S25 O 28S ribosomal protein S25, mitochondrial|S25mt|mitochondrial 28S ribosomal protein S25 20121230 -9606 64433 LINC00244 - C7orf4|NCRNA00244 HGNC:13245 7 7q36 long intergenic non-protein coding RNA 244 miscRNA LINC00244 long intergenic non-protein coding RNA 244 O - 20121230 -9606 64434 NOM1 - C7orf3|SGD1 HGNC:13244|MIM:611269|Ensembl:ENSG00000146909|HPRD:18485|Vega:OTTHUMG00000152639 7 7q36.3 nucleolar protein with MIF4G domain 1 protein-coding NOM1 nucleolar protein with MIF4G domain 1 O SGD1 homolog|nucleolar MIF4G domain-containing protein 1 20121230 -9606 64446 DNAI2 - CILD9 HGNC:18744|MIM:605483|Ensembl:ENSG00000171595|HPRD:12019|Vega:OTTHUMG00000178578 17 17q25 dynein, axonemal, intermediate chain 2 protein-coding DNAI2 dynein, axonemal, intermediate chain 2 O dynein intermediate chain 2, axonemal|dynein, axonemal, intermediate polypeptide 2 20121230 -9606 64478 CSMD1 UNQ5952/PRO19863 PPP1R24 HGNC:14026|MIM:608397|Ensembl:ENSG00000183117|HPRD:10523|Vega:OTTHUMG00000163605 8 8p23.2 CUB and Sushi multiple domains 1 protein-coding CSMD1 CUB and Sushi multiple domains 1 O CUB and sushi domain-containing protein 1|protein phosphatase 1, regulatory subunit 24 20121230 -9606 64493 LINC00235 - C16orf10|NCRNA00235 HGNC:14138 16 16p13.3 long intergenic non-protein coding RNA 235 miscRNA LINC00235 long intergenic non-protein coding RNA 235 O - 20121230 -9606 64499 TPSB2 - TPS2|tryptaseB|tryptaseC HGNC:14120|MIM:191081|Ensembl:ENSG00000197253|HPRD:10277|Vega:OTTHUMG00000155926 16 16p13.3 tryptase beta 2 (gene/pseudogene) protein-coding TPSB2 tryptase beta 2 (gene/pseudogene) O mast cell tryptase beta II|mast cell tryptase beta III|tryptase beta-2 20121230 -9606 64506 CPEB1 - CEBP|CPE-BP1|CPEB HGNC:21744|MIM:607342|Ensembl:ENSG00000214575|Ensembl:ENSG00000260836|HPRD:09553|Vega:OTTHUMG00000172875|Vega:OTTHUMG00000172877 15 15q25.2 cytoplasmic polyadenylation element binding protein 1 protein-coding CPEB1 cytoplasmic polyadenylation element binding protein 1 O CPE-binding protein 1|cytoplasmic polyadenylation element-binding protein 1|h-CEBP|hCPEB-1 20121230 -9606 64518 TEKT3 - - HGNC:14293|MIM:612683|Ensembl:ENSG00000125409|HPRD:18173|Vega:OTTHUMG00000058965 17 17p12 tektin 3 protein-coding TEKT3 tektin 3 O tektin-3|testicular microtubules-related protein 20121230 -9606 64577 ALDH8A1 - ALDH12|DJ352A20.2 HGNC:15471|MIM:606467|Ensembl:ENSG00000118514|HPRD:06974|Vega:OTTHUMG00000015623 6 6q23.2 aldehyde dehydrogenase 8 family, member A1 protein-coding ALDH8A1 aldehyde dehydrogenase 8 family, member A1 O aldehyde dehydrogenase 12|aldehyde dehydrogenase family 8 member A1|aldehyde dehydrogenase family protein 20121230 -9606 64579 NDST4 - NDST-4|NHSST4 HGNC:20779|Ensembl:ENSG00000138653|HPRD:10116|Vega:OTTHUMG00000132916 4 4q26 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 protein-coding NDST4 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 O N-HSST 4|N-heparan sulfate sulfotransferase 4|bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4|glucosaminyl N-deacetylase/N-sulfotransferase 4 20121230 -9606 64581 CLEC7A UNQ539/PRO1082 BGR|CANDF4|CLECSF12|DECTIN1 HGNC:14558|MIM:606264|Ensembl:ENSG00000172243|HPRD:08396|Vega:OTTHUMG00000133597 12 12p13.2 C-type lectin domain family 7, member A protein-coding CLEC7A C-type lectin domain family 7, member A O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12|C-type lectin domain family 7 member A|C-type lectin superfamily member 12|DC-associated C-type lectin 1|beta-glucan receptor|dectin-1|dendritic cell-associated C-type lectin 1|dendritic cell-associated C-type lectin-1|lectin-like receptor 1 20121230 -9606 64582 GPR135 - HUMNPIIY20 HGNC:19991|MIM:607970|Ensembl:ENSG00000181619|HPRD:16263|Vega:OTTHUMG00000140325 14 14q23.1 G protein-coupled receptor 135 protein-coding GPR135 G protein-coupled receptor 135 O probable G-protein coupled receptor 135 20121230 -9606 64585 BOS2 - - MIM:120502 1 1q31 Branchiootic syndrome 2 unknown - - - - 20120622 -9606 64588 CMDR - - MIM:218400 6 6q21-q22 Craniometaphyseal dysplasia, autosomal recessive unknown - - - - 20120622 -9606 64589 IMAGE - - MIM:300290 - - Intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, and genital anomalies unknown - - - - 20120722 -9606 64591 TSPY2 - TSPYQ1 HGNC:23924|Ensembl:ENSG00000168757|HPRD:18234|Vega:OTTHUMG00000040957 Y Yp11.2 testis specific protein, Y-linked 2 protein-coding TSPY2 testis specific protein, Y-linked 2 O testis-specific Y-encoded protein 2|testis-specific Y-encoded protein Q1 20121209 -9606 64593 RBMY3AP - RBMY3P|RBMY4P|SPATA14 HGNC:23286 Y Yp11.2 RNA binding motif protein, Y-linked, family 3, member A pseudogene pseudo RBMY3AP RNA binding motif protein, Y-linked, family 3, member A pseudogene O - 20121209 -9606 64595 TTTY15 - NCRNA00138 HGNC:18567 Y Yq11.1 testis-specific transcript, Y-linked 15 (non-protein coding) miscRNA TTTY15 testis-specific transcript, Y-linked 15 (non-protein coding) O - 20121230 -9606 64596 PSMA6P1 - PSMA6-LIKE|PSMA6P|PSMA6Y HGNC:17460 Y Yq11.221 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 1 pseudo PSMA6P1 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 1 O - 20121230 -9606 64598 MOSPD3 - CDS3|NET30 HGNC:25078|MIM:609125|Ensembl:ENSG00000106330|HPRD:12370|Vega:OTTHUMG00000159599 7 7q22 motile sperm domain containing 3 protein-coding MOSPD3 motile sperm domain containing 3 O motile sperm domain-containing protein 3 20121230 -9606 64599 GIGYF1 PP3360 GYF1|PERQ1 HGNC:9126|MIM:612064|Ensembl:ENSG00000146830|HPRD:10145|Vega:OTTHUMG00000157036 7 7q22 GRB10 interacting GYF protein 1 protein-coding GIGYF1 GRB10 interacting GYF protein 1 O GRB10-interacting GYF protein 1|GYF domain containing 1|PERQ amino acid rich, with GYF domain 1|PERQ amino acid-rich with GYF domain-containing protein 1|postmeiotic segregation increased 2-like 12 20121230 -9606 64600 PLA2G2F RP3-340N1.1 - HGNC:30040|Ensembl:ENSG00000158786|HPRD:07499|Vega:OTTHUMG00000002704 1 1p35 phospholipase A2, group IIF protein-coding PLA2G2F phospholipase A2, group IIF O GIIF sPLA2|group IIF secretory phospholipase A2|phosphatidylcholine 2-acylhydrolase 2F|sPLA2-IIF 20121230 -9606 64601 VPS16 RP11-12M19.2 hVPS16 HGNC:14584|MIM:608550|Ensembl:ENSG00000215305|HPRD:12259|Vega:OTTHUMG00000031714 20 20p13 vacuolar protein sorting 16 homolog (S. cerevisiae) protein-coding VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) O vacuolar protein sorting protein 16|vacuolar protein sorting-associated protein 16 homolog 20121230 -9606 64641 EBF2 - COE2|EBF-2|O/E-3|OE-3 HGNC:19090|MIM:609934|Ensembl:ENSG00000221818|HPRD:16848|Vega:OTTHUMG00000163838 8 8p21.2 early B-cell factor 2 protein-coding EBF2 early B-cell factor 2 O Collier, Olf and EBF 2|OLF-1/EBF-LIKE 3|metencephalon-mesencephalnon-olfactory transcription factor 1|transcription factor COE2 20121230 -9606 64644 GINGF2 - GGF2|HGF2 HGNC:14252|MIM:605544 5 5q13-q22 gingival fibromatosis, hereditary, 2 unknown GINGF2 gingival fibromatosis, hereditary, 2 O - 20120622 -9606 64645 HIAT1 - - HGNC:23363|Ensembl:ENSG00000156875|HPRD:11022|Vega:OTTHUMG00000010755 1 1p21.2 hippocampus abundant transcript 1 protein-coding HIAT1 hippocampus abundant transcript 1 O hippocampus abundant gene transcript 1|hippocampus abundant transcript 1 protein|putative tetracycline transporter-like protein|tetracycline transporter-like protein 20121230 -9606 64648 SPANXD - CT11.4|SPANX-C|SPANX-D|dJ171K16.1 HGNC:14332|MIM:300670|Ensembl:ENSG00000196406|HPRD:06722|Vega:OTTHUMG00000022563 X Xq27.1 SPANX family, member D protein-coding SPANXD SPANX family, member D O SPAN-Xd protein|cancer/testis antigen 11.4|cancer/testis antigen family 11, member 4|nuclear-associated protein SPAN-Xd|sperm protein associated with the nucleus on the X chromosome D|sperm protein associated with the nucleus, X chromosome, family member D 20121230 -9606 64651 CSRNP1 - AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 HGNC:14300|MIM:606458|Ensembl:ENSG00000144655|HPRD:07347|Vega:OTTHUMG00000131293 3 3p22 cysteine-serine-rich nuclear protein 1 protein-coding CSRNP1 cysteine-serine-rich nuclear protein 1 O AXIN1 up-regulated 1|TGF-beta induced apoptosis protein 3|TGF-beta-induced apoptosis protein 3|axin-1 up-regulated gene 1 protein|cysteine/serine-rich nuclear protein 1 20121230 -9606 64663 SPANXC - C|CT11.3|CTp11|SPANX-C HGNC:14331|MIM:300330|Ensembl:ENSG00000198573|HPRD:02270|Vega:OTTHUMG00000022556 X Xq27.1 SPANX family, member C protein-coding SPANXC SPANX family, member C O SPAN-Xc protein|cancer-testis-associated protein CTp11|cancer/testis antigen 11.3|cancer/testis antigen family 11, member 3|cancer/testis-associated protein CTp11|cancer/testis-associated protein of 11 kD|nuclear-associated protein SPAN-Xc|sperm protein associated with the nucleus on the X chromosome C|sperm protein associated with the nucleus, X chromosome, family member C 20121230 -9606 64682 ANAPC1 - APC1|MCPR|TSG24 HGNC:19988|MIM:608473|Ensembl:ENSG00000153107|HPRD:09769|Vega:OTTHUMG00000131277 2 2q12.1 anaphase promoting complex subunit 1 protein-coding ANAPC1 anaphase promoting complex subunit 1 O anaphase-promoting complex 1 (meiotic checkpoint regulator)|anaphase-promoting complex subunit 1|cyclosome subunit 1|mitotic checkpoint regulator|testis-specific gene 24 protein 20121230 -9606 64689 GORASP1 - GOLPH5|GRASP65|P65 HGNC:16769|MIM:606867|Ensembl:ENSG00000114745|HPRD:06038|Vega:OTTHUMG00000131292 3 3p22-p21.33 golgi reassembly stacking protein 1, 65kDa protein-coding GORASP1 golgi reassembly stacking protein 1, 65kDa O Golgi peripheral membrane protein p65|Golgi phosphoprotein 5|Golgi reassembly and stacking protein 1|Golgi reassembly and stacking protein, 65 kDa|Golgi reassembly-stacking protein 1|golgi reassembly-stacking protein of 65 kDa 20121230 -9606 64693 CTAGE1 hCG_2039601 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 HGNC:24346|MIM:608856|Ensembl:ENSG00000212710|HPRD:16395|Vega:OTTHUMG00000165867 18 18p11.2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding CTAGE1 cutaneous T-cell lymphoma-associated antigen 1 O cancer/testis antigen 21.2|cancer/testis antigen family 21, member 1|cancer/testis antigen family 21, member 2|cutaneous T-cell lymphoma-associated antigen 2|protein cTAGE-2 20121230 -9606 64695 SLEB3 - - HGNC:14535|MIM:605480 4 4p16-p15.2 systemic lupus erythematosus susceptibility 3 unknown SLEB3 systemic lupus erythematosus susceptibility 3 O - 20120622 -9606 64699 TMPRSS3 UNQ323/PRO382 DFNB10|DFNB8|ECHOS1|TADG12 HGNC:11877|MIM:605511|Ensembl:ENSG00000160183|HPRD:05696|Vega:OTTHUMG00000086796 21 21q22.3 transmembrane protease, serine 3 protein-coding TMPRSS3 transmembrane protease, serine 3 O serine protease TADG-12|transmembrane protease serine 3|tumor-associated differentially-expressed gene 12 protein 20121230 -9606 64708 COPS7B - CSN7B HGNC:16760|Ensembl:ENSG00000144524|HPRD:09889|Vega:OTTHUMG00000133228 2 2q37.1 COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis) protein-coding COPS7B COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis) O COP9 signalosome complex subunit 7b|JAB1-containing signalosome subunit 7b|SGN7b|signalosome subunit 7b 20121230 -9606 64710 NUCKS1 JC7 NUCKS HGNC:29923|MIM:611912|Ensembl:ENSG00000069275|HPRD:11406|Vega:OTTHUMG00000035996 1 1q32.1 nuclear casein kinase and cyclin-dependent kinase substrate 1 protein-coding NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 O P1|nuclear ubiquitous casein and cyclin-dependent kinase substrate 1|nuclear ubiquitous casein kinase and cyclin-dependent kinase substrate|potential LAG1 interactor 20121230 -9606 64711 HS3ST6 - HS3ST5 HGNC:14178|Ensembl:ENSG00000162040|HPRD:17115|Vega:OTTHUMG00000047860 16 16p13.3 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 protein-coding HS3ST6 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 O 3-OST-6|h3-OST-6|heparan sulfate (glucosamine) 3-O-sulfotransferase 5|heparan sulfate 3-O-sulfotransferase 6|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 6|heparan sulfate glucosamine 3-O-sulfotransferase 6|heparan sulphate D-glucosaminyl 3-O-sulfotransferase-3B like 20121230 -9606 64714 PDIA2 LA16c-314G4.2 PDA2|PDI|PDIP|PDIR HGNC:14180|MIM:608012|Ensembl:ENSG00000185615|HPRD:07617|Vega:OTTHUMG00000064891 16 16p13.3 protein disulfide isomerase family A, member 2 protein-coding PDIA2 protein disulfide isomerase family A, member 2 O Rho GDP dissociation inhibitor gamma|pancreas-specific protein disulfide isomerase|pancreatic protein disulfide isomerase|protein disulfide isomerase A2|protein disulfide isomerase, pancreatic|protein disulfide isomerase-associated 2|protein disulfide-isomerase A2 20121230 -9606 64717 TRNAG4 - TRG4 HGNC:14183 16 16p13.3 transfer RNA glycine 4 (anticodon CCC) tRNA TRNAG4 transfer RNA glycine 4 (anticodon CCC) O - 20121230 -9606 64718 UNKL LA16c-316G12.1 C16orf28|ZC3H5L|ZC3HDC5L HGNC:14184|Ensembl:ENSG00000059145|HPRD:15612|Vega:OTTHUMG00000128553 16 16p13.3 unkempt homolog (Drosophila)-like protein-coding UNKL unkempt homolog (Drosophila)-like O RING finger protein unkempt-like|putative E3 ubiquitin-protein ligase UNKL|unkempt-like|zinc finger CCCH domain-containing protein 5-like 20121230 -9606 64725 RPS3AP2 - RPS3A_21_1466 HGNC:14196 16 16p13.3 ribosomal protein S3A pseudogene 2 pseudo RPS3AP2 ribosomal protein S3A pseudogene 2 O - 20121230 -9606 64726 RPS20P2 - - HGNC:14195 16 16p13.3 ribosomal protein S20 pseudogene 2 pseudo RPS20P2 ribosomal protein S20 pseudogene 2 O - 20121230 -9606 64730 TJP1P - - HGNC:14167 16 16p13.3 tight junction protein 1 pseudogene pseudo TJP1P tight junction protein 1 pseudogene O - 20121230 -9606 64735 LINC00254 - C16orf32|NCRNA00254 HGNC:14160 16 16p13.3 long intergenic non-protein coding RNA 254 miscRNA LINC00254 long intergenic non-protein coding RNA 254 O - 20121230 -9606 64743 WDR13 - MG21 HGNC:14352|MIM:300512|Ensembl:ENSG00000101940|HPRD:06753|Vega:OTTHUMG00000024119 X Xp11.23 WD repeat domain 13 protein-coding WDR13 WD repeat domain 13 O WD repeat-containing protein 13 20121230 -9606 64744 SMAP2 - RP1-228H13.3|SMAP1L HGNC:25082|Ensembl:ENSG00000084070|HPRD:12442|Vega:OTTHUMG00000007301 1 1p35.3-p34.1 small ArfGAP2 protein-coding SMAP2 small ArfGAP2 O stromal membrane-associated GTPase-activating protein 2|stromal membrane-associated protein 2 20121230 -9606 64745 METTL17 - METT11D1 HGNC:19280|Ensembl:ENSG00000165792|HPRD:13379|Vega:OTTHUMG00000029610 14 14q11.2 methyltransferase like 17 protein-coding METTL17 methyltransferase like 17 O false p73 target gene protein|methyltransferase 11 domain containing 1|methyltransferase 11 domain-containing protein 1|methyltransferase-like protein 17, mitochondrial|protein RSM22 homolog, mitochondrial 20121230 -9606 64746 ACBD3 - GCP60|GOCAP1|GOLPH1|PAP7 HGNC:15453|MIM:606809|Ensembl:ENSG00000182827|HPRD:08432|Vega:OTTHUMG00000037560 1 1q42.12 acyl-CoA binding domain containing 3 protein-coding ACBD3 acyl-CoA binding domain containing 3 O Golgi resident protein GCP60|PBR- and PKA-associated protein 7|PKA (RIalpha)-associated protein|acyl-Coenzyme A binding domain containing 3|golgi complex associated protein 1, 60kDa|golgi phosphoprotein 1|peripheral benzodiazepine receptor-associated protein PAP7 20121230 -9606 64747 MFSD1 UG0581B09 SMAP4 HGNC:25874|Ensembl:ENSG00000118855|HPRD:07851|Vega:OTTHUMG00000158835 3 3q25.32 major facilitator superfamily domain containing 1 protein-coding MFSD1 major facilitator superfamily domain containing 1 O SMAP-4|major facilitator superfamily domain-containing protein 1|smooth muscle cell-associated protein 4 20121230 -9606 64748 LPPR2 - PRG4 Ensembl:ENSG00000105520|HPRD:17442|Vega:OTTHUMG00000182023 19 19p13.2 lipid phosphate phosphatase-related protein type 2 protein-coding - - - PRG-4|plasticity related gene 4|plasticity-related gene 4 protein 20121230 -9606 64750 SMURF2 - - HGNC:16809|MIM:605532|Ensembl:ENSG00000108854|HPRD:06901|Vega:OTTHUMG00000179189 17 17q22-q23 SMAD specific E3 ubiquitin protein ligase 2 protein-coding SMURF2 SMAD specific E3 ubiquitin protein ligase 2 O E3 ubiquitin ligase SMURF2|E3 ubiquitin-protein ligase SMURF2|SMAD ubiquitination regulatory factor 2|SMAD-specific E3 ubiquitin-protein ligase 2|hSMURF2 20121230 -9606 64753 CCDC136 NAG6 - HGNC:22225|MIM:611902|Ensembl:ENSG00000128596|HPRD:10887|Vega:OTTHUMG00000158310 7 7q33 coiled-coil domain containing 136 protein-coding CCDC136 coiled-coil domain containing 136 O coiled-coil domain-containing protein 136|nasopharyngeal carcinoma-associated gene 6 protein 20121230 -9606 64754 SMYD3 RP11-49H10.1 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 HGNC:15513|MIM:608783|Ensembl:ENSG00000185420|HPRD:12297|Vega:OTTHUMG00000040508 1 1q44 SET and MYND domain containing 3 protein-coding SMYD3 SET and MYND domain containing 3 O SET and MYND domain-containing protein 3|bA74P14.1 (novel protein)|zinc finger MYND domain-containing protein 1|zinc finger protein, subfamily 3A (MYND domain containing), 1|zinc finger, MYND domain containing 1 20121230 -9606 64755 C16orf58 - - HGNC:25848|Ensembl:ENSG00000140688|HPRD:07839|Vega:OTTHUMG00000132466 16 16p11.2 chromosome 16 open reading frame 58 protein-coding C16orf58 chromosome 16 open reading frame 58 O UPF0420 protein C16orf58 20121230 -9606 64756 ATPAF1 - ATP11|ATP11p HGNC:18803|MIM:608917|Ensembl:ENSG00000123472|HPRD:12332|Vega:OTTHUMG00000007988 1 1p33-p32.3 ATP synthase mitochondrial F1 complex assembly factor 1 protein-coding ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 O homolog of yeast ATP11 20121230 -9606 64757 MARC1 RP11-295M18.1 MOSC1 HGNC:26189|MIM:614126|Ensembl:ENSG00000186205|HPRD:08653|Vega:OTTHUMG00000037353 1 1q41 mitochondrial amidoxime reducing component 1 protein-coding MARC1 mitochondrial amidoxime reducing component 1 O MOCO sulphurase C-terminal domain containing 1|MOSC domain-containing protein 1, mitochondrial|moco sulfurase C-terminal domain-containing protein 1|molybdenum cofactor sulfurase C-terminal domain-containing protein 1 20121230 -9606 64759 TNS3 - TEM6|TENS1 HGNC:21616|MIM:606825|Ensembl:ENSG00000136205|Vega:OTTHUMG00000074075 7 7p12.3 tensin 3 protein-coding TNS3 tensin 3 O tensin-3|tensin-like SH2 domain containing 1|tensin-like SH2 domain-containing 1|tensin-like SH2 domain-containing protein 1|thyroid specific PTB domain protein|tumor endothelial marker 6 20121230 -9606 64760 FAM160B2 FP13191 RAI16 HGNC:16492|Ensembl:ENSG00000158863|HPRD:17951|Vega:OTTHUMG00000097088 8 8p21.3 family with sequence similarity 160, member B2 protein-coding FAM160B2 family with sequence similarity 160, member B2 O protein FAM160B2|retinoic acid induced 16|retinoic acid-induced protein 16 20121230 -9606 64761 PARP12 - ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 HGNC:21919|MIM:612481|Ensembl:ENSG00000059378|HPRD:15696|Vega:OTTHUMG00000157315 7 7q34 poly (ADP-ribose) polymerase family, member 12 protein-coding PARP12 poly (ADP-ribose) polymerase family, member 12 O ADP-ribosyltransferase diphtheria toxin-like 12|poly [ADP-ribose] polymerase 12|zinc finger CCCH domain-containing protein 1|zinc finger CCCH type domain containing 1 20121230 -9606 64762 GAREM - C18orf11|FAM59A|Gm944 HGNC:26136|Ensembl:ENSG00000141441|HPRD:12685|Vega:OTTHUMG00000132273 18 18q12.1 GRB2 associated, regulator of MAPK1 protein-coding GAREM GRB2 associated, regulator of MAPK1 O Grb2-associated and regulator of Erk/MAPK|family with sequence similarity 59, member A|protein FAM59A 20121230 -9606 64763 ZNF574 - FP972 HGNC:26166|Ensembl:ENSG00000105732|HPRD:15853 19 19q13.2 zinc finger protein 574 protein-coding ZNF574 zinc finger protein 574 O - 20121230 -9606 64764 CREB3L2 - BBF2H7 HGNC:23720|MIM:608834|Ensembl:ENSG00000182158|HPRD:16391|Vega:OTTHUMG00000155744 7 7q34 cAMP responsive element binding protein 3-like 2 protein-coding CREB3L2 cAMP responsive element binding protein 3-like 2 O B-ZIB transcription factor|BBF2 human homolog on chromosome 7|FUS/BBF2H7 protein|TCAG_1951439|basic transcription factor 2|cAMP-responsive element-binding protein 3-like protein 2|cyclic AMP-responsive element-binding protein 3-like protein 2 20121230 -9606 64766 S100PBP - S100PBPR HGNC:25768|MIM:611889|Ensembl:ENSG00000116497|HPRD:07803|Vega:OTTHUMG00000003955 1 1p35.1 S100P binding protein protein-coding S100PBP S100P binding protein O S100P binding protein 1|S100P-binding protein 20121230 -9606 64768 IPPK - C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 HGNC:14645|Ensembl:ENSG00000127080|HPRD:10799|Vega:OTTHUMG00000020231 9 9q22.31 inositol 1,3,4,5,6-pentakisphosphate 2-kinase protein-coding IPPK inositol 1,3,4,5,6-pentakisphosphate 2-kinase O IPK1 homolog|bA476B13.1 (novel protein)|inositol-pentakisphosphate 2-kinase|ins(1,3,4,5,6)P5 2-kinase|insP5 2-kinase 20121230 -9606 64769 MEAF6 RP3-423B22.2 C1orf149|CENP-28|EAF6|NY-SAR-91 HGNC:25674|MIM:611001|Ensembl:ENSG00000163875|HPRD:13347|Vega:OTTHUMG00000004223 1 1p35.3-p33 MYST/Esa1-associated factor 6 protein-coding MEAF6 MYST/Esa1-associated factor 6 O Esa1p-associated factor 6 homolog|centromere protein 28|chromatin modification-related protein MEAF6|protein EAF6 homolog|sarcoma antigen NY-SAR-91 20121230 -9606 64770 CCDC14 - - HGNC:25766|Ensembl:ENSG00000175455|HPRD:07801|Vega:OTTHUMG00000153005 3 3q21.1 coiled-coil domain containing 14 protein-coding CCDC14 coiled-coil domain containing 14 O coiled-coil domain-containing protein 14 20121230 -9606 64771 C6orf106 RP3-391O22.4 FP852|dJ391O22.4 HGNC:21215|MIM:612217|Ensembl:ENSG00000196821|HPRD:12837|Vega:OTTHUMG00000014553 6 6p21.31 chromosome 6 open reading frame 106 protein-coding C6orf106 chromosome 6 open reading frame 106 O uncharacterized protein C6orf106 20121230 -9606 64772 ENGASE - - HGNC:24622|MIM:611898|Ensembl:ENSG00000167280|HPRD:10978|Vega:OTTHUMG00000167714 17 17q25.3 endo-beta-N-acetylglucosaminidase protein-coding ENGASE endo-beta-N-acetylglucosaminidase O Di-N-acetylchitobiosyl beta-N-acetylglucosaminidase|Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase|cytosolic endo-beta-N-acetylglucosaminidase 20121230 -9606 64773 PCED1A RP11-12M19.1 C20orf81|FAM113A|bA12M19.1 HGNC:16212|Ensembl:ENSG00000132635|HPRD:12786|Vega:OTTHUMG00000031716 20 20p13 PC-esterase domain containing 1A protein-coding PCED1A PC-esterase domain containing 1A O PC-esterase domain-containing protein 1A|family with sequence similarity 113, member A|sarcoma antigen NY-SAR-23 20121230 -9606 64776 C11orf1 - - HGNC:1163|Ensembl:ENSG00000137720|HPRD:12601|Vega:OTTHUMG00000166884 11 11q23.1 chromosome 11 open reading frame 1 protein-coding C11orf1 chromosome 11 open reading frame 1 O UPF0686 protein C11orf1 20121230 -9606 64777 RMND5B UNQ2508/PRO5996 GID2|GID2B HGNC:26181|Ensembl:ENSG00000145916|HPRD:07985|Vega:OTTHUMG00000130897 5 5q35.3 required for meiotic nuclear division 5 homolog B (S. cerevisiae) protein-coding RMND5B required for meiotic nuclear division 5 homolog B (S. cerevisiae) O GID complex subunit 2 homolog B|protein RMD5 homolog B 20121230 -9606 64778 FNDC3B UNQ2421/PRO4979/PRO34274 FAD104|PRO4979|YVTM2421 HGNC:24670|MIM:611909|Ensembl:ENSG00000075420|HPRD:10943|Vega:OTTHUMG00000156761 3 3q26.31 fibronectin type III domain containing 3B protein-coding FNDC3B fibronectin type III domain containing 3B O HCV NS5A-binding protein 37|factor for adipocyte differentiation 104|fibronectin type III domain-containing protein 3B 20121230 -9606 64779 MTHFSD - - HGNC:25778|Ensembl:ENSG00000103248|HPRD:07808|Vega:OTTHUMG00000176480 16 16q24.1 methenyltetrahydrofolate synthetase domain containing protein-coding MTHFSD methenyltetrahydrofolate synthetase domain containing O methenyltetrahydrofolate synthase domain-containing protein|methenyltetrahydrofolate synthetase domain-containing protein 20121230 -9606 64780 MICAL1 RP5-919F19.1 MICAL|MICAL-1|NICAL HGNC:20619|MIM:607129|Ensembl:ENSG00000135596|HPRD:06183|Vega:OTTHUMG00000015350 6 6q21 microtubule associated monoxygenase, calponin and LIM domain containing 1 protein-coding MICAL1 microtubule associated monoxygenase, calponin and LIM domain containing 1 O CasL interacting molecule|NEDD9 interacting protein with calponin homology and LIM domains|NEDD9-interacting protein with calponin homology and LIM domains|molecule interacting with CasL protein 1|protein-methionine sulfoxide oxidase MICAL1 20121230 -9606 64781 CERK RP6-59H18.1 LK4|dA59H18.2|dA59H18.3|hCERK HGNC:19256|MIM:610307|Ensembl:ENSG00000100422|HPRD:09878|Vega:OTTHUMG00000150395 22 22q13.31 ceramide kinase protein-coding CERK ceramide kinase O acylsphingosine kinase|lipid kinase 4|lipid kinase LK4 20121230 -9606 64782 AEN SBBI58 ISG20L1|pp12744 HGNC:25722|MIM:610177|Ensembl:ENSG00000181026|HPRD:08573|Vega:OTTHUMG00000148681 15 15q26.1 apoptosis enhancing nuclease protein-coding AEN apoptosis enhancing nuclease O apoptosis-enhancing nuclease|interferon stimulated exonuclease gene 20kDa-like 1|interferon-stimulated 20 kDa exonuclease-like 1 20121230 -9606 64783 RBM15 - OTT|OTT1|SPEN HGNC:14959|MIM:606077|Ensembl:ENSG00000162775|HPRD:05832|Vega:OTTHUMG00000011284 1 1p13 RNA binding motif protein 15 protein-coding RBM15 RNA binding motif protein 15 O RNA-binding motif protein 15|one twenty two protein|one twenty-two|one-twenty two protein 1|putative RNA-binding protein 15 20121230 -9606 64784 CRTC3 - TORC-3|TORC3 HGNC:26148|MIM:608986|Ensembl:ENSG00000140577|HPRD:13384|Vega:OTTHUMG00000172295 15 15q26.1 CREB regulated transcription coactivator 3 protein-coding CRTC3 CREB regulated transcription coactivator 3 O CREB-regulated transcription coactivator 3|transducer of regulated CREB protein 3|transducer of regulated cAMP response element-binding protein (CREB) 3|transducer of regulated cAMP response element-binding protein 3 20121230 -9606 64785 GINS3 - PSF3 HGNC:25851|MIM:610610|Ensembl:ENSG00000181938|HPRD:07842|Vega:OTTHUMG00000133486 16 16q21 GINS complex subunit 3 (Psf3 homolog) protein-coding GINS3 GINS complex subunit 3 (Psf3 homolog) O DNA replication complex GINS protein PSF3 20121230 -9606 64786 TBC1D15 - RAB7-GAP HGNC:25694|MIM:612662|Ensembl:ENSG00000121749|HPRD:15470|Vega:OTTHUMG00000158553 12 12q21.1 TBC1 domain family, member 15 protein-coding TBC1D15 TBC1 domain family, member 15 O GAP for RAB7|GTPase-activating protein RAB7|TBC1 domain family member 15|Tre-2-budding uninhibited by benzimidazole-cell division cycle 16 domain, domain family member 15|Tre2/Bub2/Cdc16 domain family member 15 20121230 -9606 64787 EPS8L2 PP13181 EPS8R2 HGNC:21296|MIM:614988|Ensembl:ENSG00000177106|HPRD:10940|Vega:OTTHUMG00000165165 11 11p15.5 EPS8-like 2 protein-coding EPS8L2 EPS8-like 2 O EPS8-like protein 2|EPS8-related protein 2|epidermal growth factor receptor kinase substrate 8-like protein 2|epidermal growth factor receptor pathway substrate 8-related protein 2 20121230 -9606 64788 LMF1 LA16c-360B4.1 C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A HGNC:14154|MIM:611761|Ensembl:ENSG00000103227|HPRD:07789|Vega:OTTHUMG00000047848 16 16p13.3 lipase maturation factor 1 protein-coding LMF1 lipase maturation factor 1 O transmembrane protein 112 20121230 -9606 64789 EXO5 - C1orf176|DEM1|Exo V HGNC:26115|Ensembl:ENSG00000164002|HPRD:07955|Vega:OTTHUMG00000007305 1 1p34.2 exonuclease 5 protein-coding EXO5 exonuclease 5 O defects in morphology 1 homolog|defects in morphology protein 1 homolog|probable exonuclease V 20121230 -9606 64792 RABL5 - - HGNC:21895|Ensembl:ENSG00000128581|HPRD:15204|Vega:OTTHUMG00000157136 7 7q22.1 RAB, member RAS oncogene family-like 5 protein-coding RABL5 RAB, member RAS oncogene family-like 5 O RAB, member of RAS oncogene family-like 5|rab-like protein 5 20121230 -9606 64793 CEP85 - CCDC21 HGNC:25309|Ensembl:ENSG00000130695|HPRD:07844|Vega:OTTHUMG00000003380 1 1p36.11 centrosomal protein 85kDa protein-coding CEP85 centrosomal protein 85kDa O centrosomal protein of 85 kDa|coiled-coil domain containing 21|coiled-coil domain-containing protein 21 20121230 -9606 64794 DDX31 - PPP1R25 HGNC:16715|Ensembl:ENSG00000125485|HPRD:10860|Vega:OTTHUMG00000020843 9 9q34.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 protein-coding DDX31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 O DEAD box protein 31|DEAD/DEXH helicase DDX31|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31|G2 helicase|helicain|probable ATP-dependent RNA helicase DDX31|protein phosphatase 1, regulatory subunit 25 20121230 -9606 64795 RMND5A - CTLH|GID2|GID2A|RMD5|p44CTLH HGNC:25850|Ensembl:ENSG00000153561|HPRD:07841|Vega:OTTHUMG00000130262 2 2p11.2 required for meiotic nuclear division 5 homolog A (S. cerevisiae) protein-coding RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae) O C-terminal to LisH motif, 44 kDa|GID complex subunit 2 homolog A|protein RMD5 homolog A 20121230 -9606 64798 DEPTOR - DEP.6|DEPDC6 HGNC:22953|MIM:612974|Ensembl:ENSG00000155792|HPRD:13137|Vega:OTTHUMG00000165052 8 8q24.12 DEP domain containing MTOR-interacting protein protein-coding DEPTOR DEP domain containing MTOR-interacting protein O DEP domain containing 6|DEP domain containing mTOR interacting protein|DEP domain-containing mTOR-interacting protein|DEP domain-containing protein 6 20121230 -9606 64799 IQCH - NYDSP5 HGNC:25721|MIM:612523|Ensembl:ENSG00000103599|HPRD:07773|Vega:OTTHUMG00000133231 15 15q23 IQ motif containing H protein-coding IQCH IQ motif containing H O IQ domain-containing protein H|testis development protein NYD-SP5 20121230 -9606 64800 EFCAB6 RP1-185D5.5 DJBP|HSCBCIP1|dJ185D5.1 HGNC:24204|Ensembl:ENSG00000186976|HPRD:13391|Vega:OTTHUMG00000150522 22 22q13.2 EF-hand calcium binding domain 6 protein-coding EFCAB6 EF-hand calcium binding domain 6 O CAP-binding protein complex-interacting protein 1|DJ-1-binding protein|EF-hand calcium-binding domain-containing protein 6 20121230 -9606 64801 ARV1 RP11-423F24.1 - HGNC:29561|MIM:611647|Ensembl:ENSG00000173409|HPRD:12494|Vega:OTTHUMG00000037837 1 1q42.2 ARV1 homolog (S. cerevisiae) protein-coding ARV1 ARV1 homolog (S. cerevisiae) O hARV1|protein ARV1 20121230 -9606 64802 NMNAT1 RP11-807G9.1 LCA9|NMNAT|PNAT1 HGNC:17877|MIM:608700|Ensembl:ENSG00000173614|HPRD:16369|Vega:OTTHUMG00000001799 1 1p36.22 nicotinamide nucleotide adenylyltransferase 1 protein-coding NMNAT1 nicotinamide nucleotide adenylyltransferase 1 O NMN adenylyltransferase 1|NaMN adenylyltransferase 1|nicotinamide mononucleotide adenylyltransferase 1|nicotinate-nucleotide adenylyltransferase 1|pyridine nucleotide adenylyltransferase 1 20121230 -9606 64805 P2RY12 - ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999 HGNC:18124|MIM:600515|Ensembl:ENSG00000169313|HPRD:02743|Vega:OTTHUMG00000159863 3 3q24-q25 purinergic receptor P2Y, G-protein coupled, 12 protein-coding P2RY12 purinergic receptor P2Y, G-protein coupled, 12 O ADP-glucose receptor|G-protein coupled receptor SP1999|Gi-coupled ADP receptor HORK3|P2Y purinoceptor 12|P2Y12 platelet ADP receptor|purinergic receptor P2RY12|putative G-protein coupled receptor 20121230 -9606 64806 IL25 UNQ3120/PRO10272 IL17E HGNC:13765|MIM:605658|Ensembl:ENSG00000166090|HPRD:05742|Vega:OTTHUMG00000028749 14 14q11.2 interleukin 25 protein-coding IL25 interleukin 25 O interleukin 17E|interleukin-17E|interleukin-25 20121230 -9606 64816 CYP3A43 - - HGNC:17450|MIM:606534|Ensembl:ENSG00000021461|HPRD:05942|Vega:OTTHUMG00000156498 7 7q21.1 cytochrome P450, family 3, subfamily A, polypeptide 43 protein-coding CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43 O cytochrome P450 3A43|cytochrome P450 polypeptide 43|cytochrome P450, subfamily IIIA, polypeptide 43 20121230 -9606 64834 ELOVL1 CGI-88 Ssc1 HGNC:14418|MIM:611813|Ensembl:ENSG00000066322|HPRD:10935|Vega:OTTHUMG00000007422 1 1p34.2 ELOVL fatty acid elongase 1 protein-coding ELOVL1 ELOVL fatty acid elongase 1 O 3-keto acyl-CoA synthase ELOVL1|ELOVL FA elongase 1|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1|elongation of very long chain fatty acids protein 1 20121230 -9606 64837 KLC2 - - HGNC:20716|MIM:611729|Ensembl:ENSG00000174996|HPRD:13917|Vega:OTTHUMG00000133757 11 11q13.2 kinesin light chain 2 protein-coding KLC2 kinesin light chain 2 O KLC 2 20121230 -9606 64838 FNDC4 UNQ6389/PRO21134 FRCP1 HGNC:20239|MIM:611905|Ensembl:ENSG00000115226|HPRD:09965|Vega:OTTHUMG00000097787 2 2p23.3 fibronectin type III domain containing 4 protein-coding FNDC4 fibronectin type III domain containing 4 O fibronectin type III domain-containing protein 4|fibronectin type III repeat-containing protein 1 20121230 -9606 64839 FBXL17 - FBXO13|Fbl17|Fbx13 HGNC:13615|MIM:609083|Ensembl:ENSG00000145743|HPRD:10950|Vega:OTTHUMG00000159785 5 5q21.3 F-box and leucine-rich repeat protein 17 protein-coding FBXL17 F-box and leucine-rich repeat protein 17 O F-box only protein 13|F-box/LRR-repeat protein 17 20121230 -9606 64840 PORCN - DHOF|FODH|MG61|PORC|PPN|por HGNC:17652|MIM:300651|Ensembl:ENSG00000102312|HPRD:06680|Vega:OTTHUMG00000024116 X Xp11.23 porcupine homolog (Drosophila) protein-coding PORCN porcupine homolog (Drosophila) O 2410004O13Rik|probable protein-cysteine N-palmitoyltransferase porcupine|protein-cysteine N-palmitoyltransferase porcupine 20121230 -9606 64841 GNPNAT1 - GNPNAT|Gpnat1 HGNC:19980|Ensembl:ENSG00000100522|HPRD:17046|Vega:OTTHUMG00000152334 14 14q22.1 glucosamine-phosphate N-acetyltransferase 1 protein-coding GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 O glucosamine 6-phosphate N-acetyltransferase|phosphoglucosamine acetylase|phosphoglucosamine transacetylase 20121230 -9606 64843 ISL2 - - HGNC:18524|MIM:609481|Ensembl:ENSG00000159556|HPRD:11053|Vega:OTTHUMG00000143723 15 15q23 ISL LIM homeobox 2 protein-coding ISL2 ISL LIM homeobox 2 O ISL2 transcription factor, LIM/homeodomain, (islet-2)|insulin gene enhancer protein ISL-2|islet-2 20121230 -9606 64844 MARCH7 - AXO|AXOT|MARCH-VII|RNF177 HGNC:17393|MIM:613334|Ensembl:ENSG00000136536|HPRD:09817|Vega:OTTHUMG00000132029 2 2q24.2 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase protein-coding MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MARCH7|RING finger protein 177|axotrophin|membrane-associated RING finger protein 7|membrane-associated RING-CH protein VII 20121230 -9606 64847 SPATA20 - SSP411|Tisp78 HGNC:26125|MIM:613939|Ensembl:ENSG00000006282|HPRD:07961|Vega:OTTHUMG00000162162 17 17q21.33 spermatogenesis associated 20 protein-coding SPATA20 spermatogenesis associated 20 O sperm protein SSP411|sperm-specific protein 411|spermatogenesis-associated protein 20|transcript increased in spermiogenesis 78 20121230 -9606 64848 YTHDC2 - CAHL HGNC:24721|Ensembl:ENSG00000047188|HPRD:11690|Vega:OTTHUMG00000128837 5 5q22.2 YTH domain containing 2 protein-coding YTHDC2 YTH domain containing 2 O CsA-associated helicase-like protein|probable ATP-dependent RNA helicase YTHDC2 20121230 -9606 64849 SLC13A3 RP1-257E24.1 NADC3|SDCT2 HGNC:14430|MIM:606411|Ensembl:ENSG00000158296|HPRD:10450|Vega:OTTHUMG00000033042 20 20q13.12 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein-coding SLC13A3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 O Na(+)/dicarboxylate cotransporter 3|hNaDC3|naDC-3|sodium-dependent high affinity dicarboxylate transporter 3|sodium-dependent high-affinity dicarboxylate transporter 2|solute carrier family 13 member 3 20121230 -9606 64850 AGXT2L1 - - HGNC:14404|MIM:614682|Ensembl:ENSG00000164089|HPRD:10639|Vega:OTTHUMG00000161036 4 4q25 alanine-glyoxylate aminotransferase 2-like 1 protein-coding AGXT2L1 alanine-glyoxylate aminotransferase 2-like 1 O alanine--glyoxylate aminotransferase 2-like 1|ethanolamine-phosphate phospho-lyase 20121230 -9606 64851 AD6 - - MIM:605526 10 10q Alzheimer disease 6 unknown - - - - 20120622 -9606 64852 TUT1 - PAPD2|RBM21|STARPAP|TUTase HGNC:26184|MIM:610641|Ensembl:ENSG00000149016|HPRD:15226|Vega:OTTHUMG00000158564 11 11q12.2 terminal uridylyl transferase 1, U6 snRNA-specific protein-coding TUT1 terminal uridylyl transferase 1, U6 snRNA-specific O PAP-associated domain-containing 2|RNA binding motif protein 21|RNA uridylyltransferase|RNA-binding motif protein 21|RNA-binding protein 21|U6 TUTase|U6 snRNA-specific terminal uridylyltransferase 1|U6-TUTase|nuclear speckle targeted phosphatidylinositol 4-phosphate 5-kinase type I-alpha regulated-poly(A) polymerase|nuclear speckle-targeted PIPK1A-regulated-poly(A) polymerase|poly(A) polymerase associated domain containing 2|speckle targeted PIP5K1A-regulated poly(A) polymerase|star-PAP 20121230 -9606 64853 AIDA - C1orf80|RP11-378J18.7 HGNC:25761|MIM:612375|Ensembl:ENSG00000186063|HPRD:07798|Vega:OTTHUMG00000037653 1 1q41 axin interactor, dorsalization associated protein-coding AIDA axin interactor, dorsalization associated O axin interaction partner and dorsalization antagonist|axin interactor, dorsalization-associated protein 20121230 -9606 64854 USP46 - - HGNC:20075|MIM:612849|Ensembl:ENSG00000109189|HPRD:07507|Vega:OTTHUMG00000160640 4 4q12 ubiquitin specific peptidase 46 protein-coding USP46 ubiquitin specific peptidase 46 O deubiquitinating enzyme 46|ubiquitin carboxyl-terminal hydrolase 46|ubiquitin specific protease 46|ubiquitin thioesterase 46|ubiquitin thiolesterase 46|ubiquitin-specific-processing protease 46 20121230 -9606 64855 FAM129B RP11-356B19.6 C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 HGNC:25282|MIM:614045|Ensembl:ENSG00000136830|HPRD:10804|Vega:OTTHUMG00000020705 9 9q34.13 family with sequence similarity 129, member B protein-coding FAM129B family with sequence similarity 129, member B O melanoma invasion by ERK|niban-like protein 1 20121230 -9606 64856 VWA1 - WARP HGNC:30910|MIM:611901|Ensembl:ENSG00000179403|HPRD:18292|Vega:OTTHUMG00000002975 1 1p36.33 von Willebrand factor A domain containing 1 protein-coding VWA1 von Willebrand factor A domain containing 1 O von Willebrand factor A domain-containing protein 1|von Willebrand factor A domain-related protein 20121230 -9606 64857 PLEKHG2 - ARHGEF42|CLG HGNC:29515|MIM:611893|Ensembl:ENSG00000090924|HPRD:15148|Vega:OTTHUMG00000152570 19 19q13.2 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 protein-coding PLEKHG2 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 O PH domain-containing family G member 2|common-site lymphoma/leukemia guanine nucleotide exchange factor|pleckstrin homology domain-containing family G member 2 20121230 -9606 64858 DCLRE1B - APOLLO|SNM1B|SNMIB HGNC:17641|MIM:609683|Ensembl:ENSG00000118655|HPRD:16785|Vega:OTTHUMG00000011937 1 1p13.2 DNA cross-link repair 1B protein-coding DCLRE1B DNA cross-link repair 1B O 5' exonuclease Apollo|DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)|PSO2 homolog|SNM1 homolog B 20121230 -9606 64859 NABP1 - OBFC2A|SOSS-B2|SSB2 HGNC:26232|MIM:612103|Ensembl:ENSG00000173559|HPRD:08009|Vega:OTTHUMG00000132720 2 2q32.3 nucleic acid binding protein 1 protein-coding NABP1 nucleic acid binding protein 1 O SOSS complex subunit B2|nucleic acid-binding protein 1|oligonucleotide/oligosaccharide-binding fold containing 2A|oligonucleotide/oligosaccharide-binding fold-containing protein 2A|sensor of single-strand DNA complex subunit B2|sensor of ssDNA subunit B2|single-stranded DNA-binding protein 2 20121230 -9606 64860 ARMCX5 RP4-769N13.3 - HGNC:25772|Ensembl:ENSG00000125962|HPRD:06521|Vega:OTTHUMG00000022062 X Xq22.1-q22.3 armadillo repeat containing, X-linked 5 protein-coding ARMCX5 armadillo repeat containing, X-linked 5 O armadillo repeat-containing X-linked protein 5 20121230 -9606 64863 METTL4 - HsT661 HGNC:24726|Ensembl:ENSG00000101574|HPRD:14390|Vega:OTTHUMG00000131482 18 18p11.32 methyltransferase like 4 protein-coding METTL4 methyltransferase like 4 O methyltransferase-like protein 4 20121230 -9606 64864 RFX7 - RFXDC2 HGNC:25777|MIM:612660|Ensembl:ENSG00000181827|HPRD:07807 15 15q21.3 regulatory factor X, 7 protein-coding RFX7 regulatory factor X, 7 O DNA-binding protein RFX7|regulatory factor X domain containing 2|regulatory factor X domain-containing protein 2 20121230 -9606 64866 CDCP1 UNQ2486/PRO5773 CD318|SIMA135|TRASK HGNC:24357|MIM:611735|Ensembl:ENSG00000163814|HPRD:16696|Vega:OTTHUMG00000133090 3 3p21.31 CUB domain containing protein 1 protein-coding CDCP1 CUB domain containing protein 1 O CUB domain-containing protein 1|membrane glycoprotein gp140|subtractive immunization M plus HEp3-associated 135 kDa protein|transmembrane and associated with src kinases 20121230 -9606 64881 PCDH20 - PCDH13 HGNC:14257|MIM:614449|Ensembl:ENSG00000197991|Vega:OTTHUMG00000017012 13 13q21 protocadherin 20 protein-coding PCDH20 protocadherin 20 O protocadherin 13|protocadherin-13|protocadherin-20 20121230 -9606 64895 PAPOLG - - HGNC:14982|Ensembl:ENSG00000115421|HPRD:11420|Vega:OTTHUMG00000129419 2 2p16.1 poly(A) polymerase gamma protein-coding PAPOLG poly(A) polymerase gamma O PAP-gamma|SRP RNA 3' adenylating enzyme/pap2|SRP RNA 3'-adenylating enzyme|neo-PAP|neo-poly(A) polymerase|nuclear poly(A) polymerase gamma|polynucleotide adenylyltransferase gamma 20121230 -9606 64897 C12orf43 - - HGNC:25719|Ensembl:ENSG00000157895|HPRD:07771|Vega:OTTHUMG00000169150 12 12q chromosome 12 open reading frame 43 protein-coding C12orf43 chromosome 12 open reading frame 43 O uncharacterized protein C12orf43 20121230 -9606 64900 LPIN3 RP4-620E11.3 LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2 HGNC:14451|MIM:605520|Ensembl:ENSG00000132793|Vega:OTTHUMG00000033056 20 20q12 lipin 3 protein-coding LPIN3 lipin 3 O lipin-3|phosphatidate phosphatase LPIN3 20121230 -9606 64901 RANBP17 - - HGNC:14428|MIM:606141|Ensembl:ENSG00000204764|HPRD:05847|Vega:OTTHUMG00000163203 5 5q34 RAN binding protein 17 protein-coding RANBP17 RAN binding protein 17 O ran-binding protein 17 20121230 -9606 64902 AGXT2 - AGT2|DAIBAT HGNC:14412|MIM:612471|Ensembl:ENSG00000113492|HPRD:10638|Vega:OTTHUMG00000090788 5 5p13 alanine--glyoxylate aminotransferase 2 protein-coding AGXT2 alanine--glyoxylate aminotransferase 2 O (R)-3-amino-2-methylpropionate--pyruvate transaminase|alanine--glyoxylate aminotransferase 2, mitochondrial|beta-ALAAT II|beta-alanine-pyruvate aminotransferase 20121230 -9606 64919 BCL11B - CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha HGNC:13222|MIM:606558|Ensembl:ENSG00000127152|HPRD:05950|Vega:OTTHUMG00000028967 14 14q32.2 B-cell CLL/lymphoma 11B (zinc finger protein) protein-coding BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) O B-cell CLL/lymphoma 11B/T-cell receptor delta constant region fusion protein|B-cell lymphoma/leukaemia 11B|B-cell lymphoma/leukemia 11B|BCL-11B|BCL11B/TRDC fusion|COUP-TF-interacting protein 2|hRit1|radiation-induced tumor suppressor gene 1 protein|zinc finger protein hRit1 alpha 20121230 -9606 64921 CASD1 Nbla04196 C7orf12|NBLA04196 HGNC:16014|MIM:611686|Ensembl:ENSG00000127995|HPRD:13004|Vega:OTTHUMG00000023356 7 7q21.3 CAS1 domain containing 1 protein-coding CASD1 CAS1 domain containing 1 O CAS1 domain-containing protein 1|O-acetyltransferase|WUGSC:H_GS542D18.2 20121230 -9606 64922 LRRC19 - - HGNC:23379|Ensembl:ENSG00000184434|HPRD:14313|Vega:OTTHUMG00000019710 9 9p21.2 leucine rich repeat containing 19 protein-coding LRRC19 leucine rich repeat containing 19 O leucine-rich repeat-containing protein 19 20121230 -9606 64924 SLC30A5 UNQ863/PRO1879 ZNT5|ZNTL1|ZTL1|ZnT-5 HGNC:19089|MIM:607819|Ensembl:ENSG00000145740|HPRD:06381|Vega:OTTHUMG00000131253 5 5q12.1 solute carrier family 30 (zinc transporter), member 5 protein-coding SLC30A5 solute carrier family 30 (zinc transporter), member 5 O zinc transporter 5|zinc transporter ZTL1|znT-like transporter 1 20121230 -9606 64925 CCDC71 - - HGNC:25760|Ensembl:ENSG00000177352|HPRD:08576|Vega:OTTHUMG00000156815 3 3p21.31 coiled-coil domain containing 71 protein-coding CCDC71 coiled-coil domain containing 71 O 2600016J21Rik|coiled-coil domain-containing protein 71 20121230 -9606 64926 RASAL3 - - HGNC:26129|Ensembl:ENSG00000105122 19 19p13.12 RAS protein activator like 3 protein-coding RASAL3 RAS protein activator like 3 O RAS protein activator like-3 20121230 -9606 64927 TTC23 HCC8 HCC-8 HGNC:25730|Ensembl:ENSG00000103852|HPRD:07777|Vega:OTTHUMG00000147344 15 15q26.3 tetratricopeptide repeat domain 23 protein-coding TTC23 tetratricopeptide repeat domain 23 O TPR repeat protein 23|cervical cancer proto-oncogene 8 protein|proto-oncogene 8|tetratricopeptide repeat protein 23 20121230 -9606 64928 MRPL14 - L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 HGNC:14279|MIM:611827|Ensembl:ENSG00000180992|HPRD:14741|Vega:OTTHUMG00000014756 6 6p21.3 mitochondrial ribosomal protein L14 protein-coding MRPL14 mitochondrial ribosomal protein L14 O 39S ribosomal protein L14, mitochondrial|39S ribosomal protein L32, mitochondrial 20121230 -9606 64939 SMNP - - - 9 9p21.3 survival of motor neuron 1, telomeric pseudogene pseudo - - - - 20121230 -9606 64940 STAG3L4 - - HGNC:33887|HPRD:07817 7 7p11.2-q11.2 stromal antigen 3-like 4 pseudo STAG3L4 stromal antigen 3-like 4 O - 20121230 -9606 64943 NT5DC2 - - HGNC:25717|Ensembl:ENSG00000168268|HPRD:07770|Vega:OTTHUMG00000158626 3 3p21.1 5'-nucleotidase domain containing 2 protein-coding NT5DC2 5'-nucleotidase domain containing 2 O 5'-nucleotidase domain-containing protein 2 20121230 -9606 64946 CENPH - - HGNC:17268|MIM:605607|Ensembl:ENSG00000153044|HPRD:12029|Vega:OTTHUMG00000097816 5 5p15.2 centromere protein H protein-coding CENPH centromere protein H O CENP-H|interphase centromere complex protein 35|kinetochore protein CENP-H 20121230 -9606 64949 MRPS26 - C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3 HGNC:14045|MIM:611988|Ensembl:ENSG00000125901|HPRD:17595|Vega:OTTHUMG00000031721 20 20p13 mitochondrial ribosomal protein S26 protein-coding MRPS26 mitochondrial ribosomal protein S26 O 28S ribosomal protein S13, mitochondrial|28S ribosomal protein S26, mitochondrial|S13mt|S26mt|serologically defined breast cancer antigen NY-BR-87 20121230 -9606 64951 MRPS24 HSPC335 MRP-S24|S24mt|bMRP-47|bMRP47 HGNC:14510|MIM:611986|Ensembl:ENSG00000062582|HPRD:17593|Vega:OTTHUMG00000023175 7 7p14 mitochondrial ribosomal protein S24 protein-coding MRPS24 mitochondrial ribosomal protein S24 O 28S ribosomal protein S24, mitochondrial|mitochondrial 28S ribosomal protein S24 20121230 -9606 64960 MRPS15 DC37 MPR-S15|RPMS15|S15mt HGNC:14504|MIM:611979|Ensembl:ENSG00000116898|HPRD:11372|Vega:OTTHUMG00000008042 1 1p34.3 mitochondrial ribosomal protein S15 protein-coding MRPS15 mitochondrial ribosomal protein S15 O 28S ribosomal protein S15, mitochondrial|MRP-S15 20121230 -9606 64963 MRPS11 HCC2 HCC-2 HGNC:14050|MIM:611977|Ensembl:ENSG00000181991|HPRD:14776|Vega:OTTHUMG00000148678 15 15q25 mitochondrial ribosomal protein S11 protein-coding MRPS11 mitochondrial ribosomal protein S11 O 28S ribosomal protein S11, mitochondrial|MRP-S11|S11mt|cervical cancer proto-oncogene 2 protein 20121230 -9606 64965 MRPS9 - MRP-S9|RPMS9|S9mt HGNC:14501|MIM:611975|Ensembl:ENSG00000135972|HPRD:17602|Vega:OTTHUMG00000130807 2 2q12.1 mitochondrial ribosomal protein S9 protein-coding MRPS9 mitochondrial ribosomal protein S9 O 28S ribosomal protein S9, mitochondrial 20121230 -9606 64968 MRPS6 - C21orf101|MRP-S6|RPMS6|S6mt HGNC:14051|MIM:611973|Ensembl:ENSG00000243927|HPRD:11374|Vega:OTTHUMG00000065820 21 21q22.11 mitochondrial ribosomal protein S6 protein-coding MRPS6 mitochondrial ribosomal protein S6 O 28S ribosomal protein S6, mitochondrial 20121230 -9606 64969 MRPS5 - MRP-S5|S5mt HGNC:14498|MIM:611972|Ensembl:ENSG00000144029|HPRD:10099|Vega:OTTHUMG00000130394 2 2p11.2-q11.2 mitochondrial ribosomal protein S5 protein-coding MRPS5 mitochondrial ribosomal protein S5 O 28S ribosomal protein S5, mitochondrial|mitochondrial 28S ribosomal protein S5 20121230 -9606 64975 MRPL41 PIG3 BMRP|MRP-L27|MRPL27|RPML27 HGNC:14492|MIM:611846|Ensembl:ENSG00000182154|HPRD:14760|Vega:OTTHUMG00000020987 9 9q34.3 mitochondrial ribosomal protein L41 protein-coding MRPL41 mitochondrial ribosomal protein L41 O 39S ribosomal protein L27 homolog|39S ribosomal protein L41, mitochondrial|L41mt|MRP-L27 homolog|MRP-L41|bcl-2-interacting mitochondrial ribosomal protein L41|cell proliferation-inducing gene 3 protein|proliferation-inducing gene 3 20121230 -9606 64976 MRPL40 - MRP-L22|MRPL22|NLVCF|URIM HGNC:14491|MIM:605089|Ensembl:ENSG00000185608|HPRD:05476|Vega:OTTHUMG00000150136 22 22q11.2 mitochondrial ribosomal protein L40 protein-coding MRPL40 mitochondrial ribosomal protein L40 O 39S ribosomal protein L40, mitochondrial|L40mt|MRP-L40|nuclear localization signal containing protein deleted in velocardiofacial syndrome|nuclear localization signal deleted in velocardiofacial syndrome|nuclear localization signal-containing protein deleted in velocardiofacial syndrome|up-regulated in metastasis 20121230 -9606 64978 MRPL38 HSPC262 L38MT|MRP-L3|MRP-L38|RPML3 HGNC:14033|MIM:611844|Ensembl:ENSG00000204316|HPRD:14758|Vega:OTTHUMG00000152977 17 17q25.3 mitochondrial ribosomal protein L38 protein-coding MRPL38 mitochondrial ribosomal protein L38 O 39S ribosomal protein L38, mitochondrial 20121230 -9606 64979 MRPL36 - BRIP1|L36mt|MRP-L36|PRPL36|RPMJ HGNC:14490|MIM:611842|Ensembl:ENSG00000171421|HPRD:14756|Vega:OTTHUMG00000090373 5 5p15.3 mitochondrial ribosomal protein L36 protein-coding MRPL36 mitochondrial ribosomal protein L36 O 39S ribosomal protein L36, mitochondrial|BRCA1-interacting protein 1|putative BRCA1-interacting protein 20121230 -9606 64981 MRPL34 - L34mt HGNC:14488|MIM:611840|Ensembl:ENSG00000130312|HPRD:14754 19 19p13.1 mitochondrial ribosomal protein L34 protein-coding MRPL34 mitochondrial ribosomal protein L34 O 39S ribosomal protein L34, mitochondrial|MRP-L34 20121230 -9606 64983 MRPL32 HSPC283 L32mt|MRP-L32|bMRP-59b HGNC:14035|MIM:611839|Ensembl:ENSG00000106591|HPRD:14752|Vega:OTTHUMG00000155180 7 7p14 mitochondrial ribosomal protein L32 protein-coding MRPL32 mitochondrial ribosomal protein L32 O 39S ribosomal protein L32, mitochondrial 20121230 -9606 65003 MRPL11 CGI-113 L11MT|MRP-L11 HGNC:14042|MIM:611826|Ensembl:ENSG00000174547|HPRD:14739|Vega:OTTHUMG00000167097 11 11q13.3 mitochondrial ribosomal protein L11 protein-coding MRPL11 mitochondrial ribosomal protein L11 O 39S ribosomal protein L11, mitochondrial 20121230 -9606 65005 MRPL9 RP11-98D18.5 L9mt HGNC:14277|MIM:611824|Ensembl:ENSG00000143436|HPRD:14774|Vega:OTTHUMG00000013063 1 1q21 mitochondrial ribosomal protein L9 protein-coding MRPL9 mitochondrial ribosomal protein L9 O 39S ribosomal protein L9, mitochondrial|MRP-L9 20121230 -9606 65008 MRPL1 BM-022 BM022|L1MT|MRP-L1 HGNC:14275|MIM:611821|Ensembl:ENSG00000169288|Vega:OTTHUMG00000130200 4 4q21.1 mitochondrial ribosomal protein L1 protein-coding MRPL1 mitochondrial ribosomal protein L1 O 39S ribosomal protein L1, mitochondrial 20121230 -9606 65009 NDRG4 - BDM1|SMAP-8|SMAP8 HGNC:14466|MIM:614463|Ensembl:ENSG00000103034|HPRD:14817|Vega:OTTHUMG00000133485 16 16q21-q22.1 NDRG family member 4 protein-coding NDRG4 NDRG family member 4 O N-myc downstream-regulated gene 4 protein|brain development-related molecule 1|protein NDRG4|smooth muscle-associated protein 8|vascular smooth muscle cell-associated protein 8 20121230 -9606 65010 SLC26A6 - - HGNC:14472|MIM:610068|Ensembl:ENSG00000225697|HPRD:10235|Vega:OTTHUMG00000156646 3 3p21.3 solute carrier family 26, member 6 protein-coding SLC26A6 solute carrier family 26, member 6 O anion transporter 1|pendrin L1|pendrin-L1|pendrin-like protein 1|solute carrier family 26 member 6|sulfate anion transporter 20121230 -9606 65012 SLC26A10 - - HGNC:14470|Ensembl:ENSG00000135502|HPRD:10234|Vega:OTTHUMG00000128505 12 12q13 solute carrier family 26, member 10 protein-coding SLC26A10 solute carrier family 26, member 10 O solute carrier family 26 member 10 20121230 -9606 65014 CMD1K - - HGNC:14541|MIM:605582 6 6q12-q16 cardiomyopathy, dilated 1K (autosomal dominant) unknown CMD1K cardiomyopathy, dilated 1K (autosomal dominant) O - 20120622 -9606 65018 PINK1 - BRPK|PARK6 HGNC:14581|MIM:608309|Ensembl:ENSG00000158828|HPRD:10514|Vega:OTTHUMG00000002841 1 1p36 PTEN induced putative kinase 1 protein-coding PINK1 PTEN induced putative kinase 1 O PTEN-induced putative kinase protein 1|protein kinase BRPK|serine/threonine-protein kinase PINK1, mitochondrial 20121230 -9606 65055 REEP1 - C2orf23|HMN5B|SPG31 HGNC:25786|MIM:609139|Ensembl:ENSG00000068615|HPRD:07810|Vega:OTTHUMG00000130205 2 2p11.2 receptor accessory protein 1 protein-coding REEP1 receptor accessory protein 1 O receptor expression-enhancing protein 1 20121230 -9606 65056 GPBP1 - GPBP|SSH6|VASCULIN HGNC:29520|MIM:608412|Ensembl:ENSG00000062194|HPRD:16333|Vega:OTTHUMG00000162321 5 5q11.2 GC-rich promoter binding protein 1 protein-coding GPBP1 GC-rich promoter binding protein 1 O vascular wall-linked protein|vasculin 20121230 -9606 65057 ACD - PIP1|PTOP|TINT1|TPP1 HGNC:25070|MIM:609377|Ensembl:ENSG00000102977|HPRD:12417|Vega:OTTHUMG00000137547 16 16q22.1 adrenocortical dysplasia homolog (mouse) protein-coding ACD adrenocortical dysplasia homolog (mouse) O POT1 and TIN2 organizing protein|POT1 and TIN2-interacting protein|TIN2 interacting protein 1|adrenocortical dysplasia protein homolog 20121230 -9606 65059 RAPH1 - ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 HGNC:14436|MIM:609035|Ensembl:ENSG00000173166|HPRD:12356|Vega:OTTHUMG00000132876 2 2q33 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 O amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 18|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 9|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 18 protein|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 9 protein|lamellipodin|proline-rich EVH1 ligand 2|ras-associated and pleckstrin homology domains-containing protein 1 20121230 -9606 65061 CDK15 - ALS2CR7|PFTAIRE2|PFTK2 HGNC:14434|Ensembl:ENSG00000138395|HPRD:12449|Vega:OTTHUMG00000132838 2 2q33.2 cyclin-dependent kinase 15 protein-coding CDK15 cyclin-dependent kinase 15 O PFTAIRE protein kinase 2|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 7|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 7 protein|cell division protein kinase 15|serine/threonine protein kinase|serine/threonine-protein kinase ALS2CR7|serine/threonine-protein kinase PFTAIRE-2 20121230 -9606 65062 TMEM237 - ALS2CR4|JBTS14 HGNC:14432|MIM:614423|Ensembl:ENSG00000155755|HPRD:12448|Vega:OTTHUMG00000154526 2 2q33.2 transmembrane protein 237 protein-coding TMEM237 transmembrane protein 237 O amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 4 protein 20121230 -9606 65065 NBEAL1 - A530083I02Rik|ALS2CR16|ALS2CR17 HGNC:20681|MIM:609816|Ensembl:ENSG00000144426|HPRD:14811|Vega:OTTHUMG00000154129 2 2q33.2 neurobeachin-like 1 protein-coding NBEAL1 neurobeachin-like 1 O amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 16|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 17|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 16 protein|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 17 protein|beach|neurobeachin-like protein 1 20121230 -9606 65072 CFLAR-AS1 - ALS2CR10 HGNC:14437 2 2q33 CFLAR antisense RNA 1 miscRNA CFLAR-AS1 CFLAR antisense RNA 1 O - 20121230 -9606 65076 AOMS1 - SYNX MIM:605552 3 3q27 Abdominal obesity-metabolic syndrome QTL1 unknown - - - - 20120622 -9606 65077 AOMS2 - - MIM:605572 17 17p12 abdominal obesity-metabolic syndrome QTL2 unknown - - - - 20120622 -9606 65078 RTN4R UNQ330/PRO526 NGR|NOGOR HGNC:18601|MIM:605566|Ensembl:ENSG00000040608|HPRD:16123|Vega:OTTHUMG00000150572 22 22q11.21 reticulon 4 receptor protein-coding RTN4R reticulon 4 receptor O Nogo-66 receptor|UNQ330/PRO526|nogo receptor|reticulon-4 receptor 20121230 -9606 65080 MRPL44 - L44MT|MRP-L44 HGNC:16650|MIM:611849|Ensembl:ENSG00000135900|HPRD:14763|Vega:OTTHUMG00000133164 2 2q36.1 mitochondrial ribosomal protein L44 protein-coding MRPL44 mitochondrial ribosomal protein L44 O 39S ribosomal protein L44, mitochondrial 20121230 -9606 65082 VPS33A - - HGNC:18179|MIM:610034|Ensembl:ENSG00000139719|Ensembl:ENSG00000256861|HPRD:15651|Vega:OTTHUMG00000168918|Vega:OTTHUMG00000168920 12 12q24.31 vacuolar protein sorting 33 homolog A (S. cerevisiae) protein-coding VPS33A vacuolar protein sorting 33 homolog A (S. cerevisiae) O hVPS33A|vacuolar protein sorting 33A|vacuolar protein sorting-associated protein 33A 20121230 -9606 65083 NOL6 - NRAP|UTP22|bA311H10.1 HGNC:19910|MIM:611532|Ensembl:ENSG00000165271|HPRD:14832|Vega:OTTHUMG00000000394 9 9p13.3 nucleolar protein family 6 (RNA-associated) protein-coding NOL6 nucleolar protein family 6 (RNA-associated) O nucleolar RNA-associated protein|nucleolar protein 6 20121230 -9606 65084 TMEM135 - PMP52 HGNC:26167|Ensembl:ENSG00000166575|HPRD:07978|Vega:OTTHUMG00000167248 11 11q14.2 transmembrane protein 135 protein-coding TMEM135 transmembrane protein 135 O peroxisomal membrane protein 52 20121230 -9606 65094 JMJD4 - - HGNC:25724|Ensembl:ENSG00000081692|HPRD:07774|Vega:OTTHUMG00000037698 1 1q42.13 jumonji domain containing 4 protein-coding JMJD4 jumonji domain containing 4 O jmjC domain-containing protein 4|jumonji domain-containing protein 4 20121230 -9606 65095 KRI1 - - HGNC:25769|Ensembl:ENSG00000129347|HPRD:10969|Vega:OTTHUMG00000150343 19 19p13.2 KRI1 homolog (S. cerevisiae) protein-coding KRI1 KRI1 homolog (S. cerevisiae) O protein KRI1 homolog 20121230 -9606 65108 MARCKSL1 - F52|MACMARCKS|MLP|MLP1|MRP HGNC:7142|MIM:602940|Ensembl:ENSG00000175130|HPRD:04247|Vega:OTTHUMG00000007589 1 1p35.1 MARCKS-like 1 protein-coding MARCKSL1 MARCKS-like 1 O MARCKS-like protein 1|MARCKS-related protein|mac-MARCKS|macrophage myristoylated alanine-rich C kinase substrate 20121230 -9606 65109 UPF3B - HUPF3B|MRXS14|RENT3B|UPF3X HGNC:20439|MIM:300298|Ensembl:ENSG00000125351|HPRD:02247|Vega:OTTHUMG00000022282 X Xq25-q26 UPF3 regulator of nonsense transcripts homolog B (yeast) protein-coding UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) O hUpf3p-X|nonsense mRNA reducing factor 3B|regulator of nonsense transcripts 3B|up-frameshift suppressor 3 homolog B|up-frameshift suppressor 3 homolog on chromosome X 20121230 -9606 65110 UPF3A RP11-569D9.1 HUPF3A|RENT3A|UPF3 HGNC:20332|MIM:605530|Ensembl:ENSG00000169062|HPRD:09274|Vega:OTTHUMG00000017403 13 13q34 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) O hUpf3|nonsense mRNA reducing factor 3A|regulator of nonsense transcripts 3A|up-frameshift suppressor 3 homolog A 20121230 -9606 65117 RSRC2 - - HGNC:30559|Ensembl:ENSG00000111011|HPRD:13342|Vega:OTTHUMG00000167572 12 12q24.31 arginine/serine-rich coiled-coil 2 protein-coding RSRC2 arginine/serine-rich coiled-coil 2 O arginine/serine-rich coiled-coil protein 2 20121230 -9606 65121 PRAMEF1 RP5-1198H6.2 - HGNC:28840|Ensembl:ENSG00000116721|HPRD:11272|Vega:OTTHUMG00000001928 1 1p36.21 PRAME family member 1 protein-coding PRAMEF1 PRAME family member 1 O - 20121230 -9606 65122 PRAMEF2 - DJ845O24.3|RP5-845O24.1 HGNC:28841|Ensembl:ENSG00000120952|HPRD:11273|Vega:OTTHUMG00000001986 1 1p36.21 PRAME family member 2 protein-coding PRAMEF2 PRAME family member 2 O - 20121230 -9606 65123 INTS3 RP11-216N14.2 C1orf193|C1orf60|INT3|SOSS-A HGNC:26153|MIM:611347|Ensembl:ENSG00000143624|HPRD:08644|Vega:OTTHUMG00000037089 1 1q21.3 integrator complex subunit 3 protein-coding INTS3 integrator complex subunit 3 O RP11-216N14.4|SOSS complex subunit A|sensor of single-strand DNA complex subunit A|sensor of ssDNA A|sensor of ssDNA subunit A 20121230 -9606 65124 SOWAHC - ANKRD57|C2orf26 HGNC:26149|Ensembl:ENSG00000198142|HPRD:08643|Vega:OTTHUMG00000153219 2 2q13 sosondowah ankyrin repeat domain family member C protein-coding SOWAHC sosondowah ankyrin repeat domain family member C O ankyrin repeat domain 57|ankyrin repeat domain-containing protein 57|ankyrin repeat domain-containing protein SOWAHC|protein sosondowah homolog C 20121230 -9606 65125 WNK1 - HSAN2|HSN2|KDP|PRKWNK1|PSK|p65 HGNC:14540|MIM:605232|Ensembl:ENSG00000060237|HPRD:05570|Vega:OTTHUMG00000090321 12 12p13.3 WNK lysine deficient protein kinase 1 protein-coding WNK1 WNK lysine deficient protein kinase 1 O WNK lysine deficient protein kinase 1 isoform|erythrocyte 65 kDa protein|prostate-derived sterile 20-like kinase|protein kinase with no lysine 1|serine/threonine-protein kinase WNK1 20121230 -9606 65211 FRTS - RFS MIM:134600 15 15q15.3 Fanconi renotubular syndrome unknown - - - - 20120622 -9606 65217 PCDH15 RP11-449J3.2 CDHR15|DFNB23|USH1F HGNC:14674|MIM:605514|Ensembl:ENSG00000150275|HPRD:05698|Vega:OTTHUMG00000018259 10 10q21.1 protocadherin-related 15 protein-coding PCDH15 protocadherin-related 15 O cadherin-related family member 15|protocadherin-15 20121230 -9606 65220 NADK RP1-283E3.6 dJ283E3.1 HGNC:29831|MIM:611616|Ensembl:ENSG00000008130|HPRD:16907|Vega:OTTHUMG00000000942 1 1p36.33 NAD kinase protein-coding NADK NAD kinase O poly(P)/ATP NAD kinase 20121230 -9606 65243 ZFP69B RP1-228H13.4 RP11-656D10.1|ZNF643 HGNC:28053|Ensembl:ENSG00000187801|HPRD:15884|Vega:OTTHUMG00000007302 1 1p34.2 ZFP69 zinc finger protein B protein-coding ZFP69B ZFP69 zinc finger protein B O novel zinc finger protein|zinc finger protein 643 20121230 -9606 65244 SPATS2 Nbla00526 P59SCR|SCR59|SPATA10 HGNC:18650|MIM:611667|Ensembl:ENSG00000123352|HPRD:15434|Vega:OTTHUMG00000169419 12 12q13.12 spermatogenesis associated, serine-rich 2 protein-coding SPATS2 spermatogenesis associated, serine-rich 2 O putative protein product of Nbla00526|serine-rich spermatocytes and round spermatid 59 kDa protein|serine-rich spermatocytes and round spermatid protein|spermatogenesis-associated serine-rich protein 2 20121230 -9606 65245 PSORS7 - - HGNC:14207|MIM:605606 1 1p psoriasis susceptibility 7 unknown PSORS7 psoriasis susceptibility 7 O - 20120622 -9606 65249 ZSWIM4 - - HGNC:25704|Ensembl:ENSG00000132003|HPRD:15904|Vega:OTTHUMG00000181752 19 19p13.13 zinc finger, SWIM-type containing 4 protein-coding ZSWIM4 zinc finger, SWIM-type containing 4 O zinc finger SWIM domain-containing protein 4|zinc finger, SWIM domain containing 4 20121230 -9606 65250 C5orf42 - JBTS17 HGNC:25801|MIM:614571|Ensembl:ENSG00000197603|HPRD:07822|Vega:OTTHUMG00000160492 5 5p13.2 chromosome 5 open reading frame 42 protein-coding C5orf42 chromosome 5 open reading frame 42 O Transmembrane protein ENSP00000382582|uncharacterized protein C5orf42 20121230 -9606 65251 ZNF649 - - HGNC:25741|MIM:611903|Ensembl:ENSG00000198093|HPRD:07785 19 19q13.41 zinc finger protein 649 protein-coding ZNF649 zinc finger protein 649 O - 20121230 -9606 65258 MPPE1 PP579 PGAP5 HGNC:15988|MIM:611900|Ensembl:ENSG00000154889|HPRD:14734|Vega:OTTHUMG00000131661 18 18p11.21 metallophosphoesterase 1 protein-coding MPPE1 metallophosphoesterase 1 O metallo phosphoesterase|post-GPI attachment to proteins factor 5 20121230 -9606 65260 SELRC1 - C1orf163 HGNC:25716|Ensembl:ENSG00000162377|HPRD:07769|Vega:OTTHUMG00000008505 1 1p32.3 Sel1 repeat containing 1 protein-coding SELRC1 Sel1 repeat containing 1 O beta-lactamase hcp-like protein|hcp beta-lactamase-like protein C1orf163|sel1 repeat-containing protein 1 20121230 -9606 65263 PYCRL - - HGNC:25846|Ensembl:ENSG00000104524|HPRD:15196|Vega:OTTHUMG00000157010 8 8q24.3 pyrroline-5-carboxylate reductase-like protein-coding PYCRL pyrroline-5-carboxylate reductase-like O P5C reductase 3|P5CR 3|pyrroline-5-carboxylate reductase 3|pyrroline-5-carboxylate reductase-like protein 20121230 -9606 65264 UBE2Z HOYS7 USE1 HGNC:25847|MIM:611362|Ensembl:ENSG00000159202|HPRD:08589|Vega:OTTHUMG00000150521 17 17q21.32 ubiquitin-conjugating enzyme E2Z protein-coding UBE2Z ubiquitin-conjugating enzyme E2Z O UBA6-specific enzyme E2|uba6-specific E2 conjugating enzyme 1|ubiquitin carrier protein Z|ubiquitin-conjugating enzyme E2 Z|ubiquitin-protein ligase Z 20121230 -9606 65265 C8orf33 - - HGNC:26104|Ensembl:ENSG00000182307|HPRD:07951|Vega:OTTHUMG00000165256 8 8q24.3 chromosome 8 open reading frame 33 protein-coding C8orf33 chromosome 8 open reading frame 33 O UPF0488 protein C8orf33 20121230 -9606 65266 WNK4 - PHA2B|PRKWNK4 HGNC:14544|MIM:601844|Ensembl:ENSG00000126562|HPRD:03505|Vega:OTTHUMG00000180650 17 17q21-q22 WNK lysine deficient protein kinase 4 protein-coding WNK4 WNK lysine deficient protein kinase 4 O protein kinase lysine-deficient 4|protein kinase with no lysine 4|serine/threonine-protein kinase WNK4 20121230 -9606 65267 WNK3 RP3-390O13.2 PRKWNK3 HGNC:14543|MIM:300358|Ensembl:ENSG00000196632|HPRD:02289|Vega:OTTHUMG00000021626 X Xp11.22 WNK lysine deficient protein kinase 3 protein-coding WNK3 WNK lysine deficient protein kinase 3 O protein kinase with no lysine 3|serine/threonine-protein kinase WNK3 20121230 -9606 65268 WNK2 RP11-165J3.2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 HGNC:14542|MIM:606249|Ensembl:ENSG00000165238|HPRD:06951|Vega:OTTHUMG00000020247 9 9q22.3 WNK lysine deficient protein kinase 2 protein-coding WNK2 WNK lysine deficient protein kinase 2 O antigen NY-CO-43|mitogen-activated protein kinase kinase kinase|protein kinase lysine-deficient 2|protein kinase with no lysine 2|protein kinase, lysine deficient 2|serine/threonine-protein kinase WNK2|serologically defined colon cancer antigen 43 20121230 -9606 65944 OR2B8P - OR2B8|OR6-10|dJ313I6.4|hs6M1-29P HGNC:13968 6 6p21.3 olfactory receptor, family 2, subfamily B, member 8 pseudogene pseudo OR2B8P olfactory receptor, family 2, subfamily B, member 8 pseudogene O - 20121230 -9606 65975 STK33 - - HGNC:14568|MIM:607670|Ensembl:ENSG00000130413|HPRD:09642|Vega:OTTHUMG00000140275 11 11p15.3 serine/threonine kinase 33 protein-coding STK33 serine/threonine kinase 33 O serine/threonine-protein kinase 33 20121230 -9606 65977 PLEKHA3 - FAPP1 HGNC:14338|MIM:607774|Ensembl:ENSG00000116095|HPRD:09688|Vega:OTTHUMG00000154446 2 2q31.2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 protein-coding PLEKHA3 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 O FAPP-1|PH domain-containing family A member 3|four-phosphate-adaptor protein 1|phosphatidylinositol-four-phosphate adapter protein 1|phosphoinositol 4-phosphate adapter protein 1|pleckstrin homology domain-containing family A member 3|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 20121230 -9606 65978 IGSF6-DREV1 - - - 16 - region containing immunoglobulin superfamily, member 6 and DREV1 other - - - - 20100615 -9606 65979 PHACTR4 RP11-442N24__A.1 - HGNC:25793|MIM:608726|Ensembl:ENSG00000204138|HPRD:07816|Vega:OTTHUMG00000003541 1 1p35.3 phosphatase and actin regulator 4 protein-coding PHACTR4 phosphatase and actin regulator 4 O - 20121230 -9606 65980 BRD9 UNQ3040/PRO9856 LAVS3040|PRO9856 HGNC:25818|Ensembl:ENSG00000028310|HPRD:12532|Vega:OTTHUMG00000159258 5 5p15.33 bromodomain containing 9 protein-coding BRD9 bromodomain containing 9 O bromodomain-containing protein 9|rhabdomyosarcoma antigen MU-RMS-40.8|sarcoma antigen NY-SAR-29 20121230 -9606 65981 CAPRIN2 - C1QDC1|EEG-1|EEG1|RNG140 HGNC:21259|MIM:610375|Ensembl:ENSG00000110888|HPRD:12711|Vega:OTTHUMG00000169185 12 12p11 caprin family member 2 protein-coding CAPRIN2 caprin family member 2 O C1q domain-containing protein 1|RNA granule protein 140|caprin-2|cytoplasmic activation/proliferation-associated protein 2|gastric cancer multidrug resistance-associated protein 20121230 -9606 65982 ZSCAN18 - ZNF447 HGNC:21037|Ensembl:ENSG00000121413|HPRD:07802 19 19q13.43 zinc finger and SCAN domain containing 18 protein-coding ZSCAN18 zinc finger and SCAN domain containing 18 O zinc finger and SCAN domain-containing protein 18|zinc finger protein 447 20121230 -9606 65983 GRAMD3 - NS3TP2 HGNC:24911|Ensembl:ENSG00000155324|HPRD:11402|Vega:OTTHUMG00000128943 5 5q23.2 GRAM domain containing 3 protein-coding GRAMD3 GRAM domain containing 3 O GRAM domain-containing protein 3|HCV NS3-transactivated protein 2|hepatitis C virus nonstructural protein 3-transactivating protein 2 20121230 -9606 65985 AACS - ACSF1|SUR-5 HGNC:21298|MIM:614364|Ensembl:ENSG00000081760|HPRD:12391|Vega:OTTHUMG00000168550 12 12q24.31 acetoacetyl-CoA synthetase protein-coding AACS acetoacetyl-CoA synthetase O acetoacetate-CoA ligase|acyl-CoA synthetase family member 1|homolog of C. elegans supressor of ras 5 (sur-5)|protein sur-5 homolog 20121230 -9606 65986 ZBTB10 - RINZF HGNC:30953|Ensembl:ENSG00000205189|HPRD:15689|Vega:OTTHUMG00000155016 8 8q13-q21.1 zinc finger and BTB domain containing 10 protein-coding ZBTB10 zinc finger and BTB domain containing 10 O zinc finger and BTB domain-containing protein 10|zinc finger protein RIN ZF|zinc finger protein RINZF 20121230 -9606 65987 KCTD14 - - HGNC:23295|Ensembl:ENSG00000151364|HPRD:13764|Vega:OTTHUMG00000150224 11 11q14.1 potassium channel tetramerisation domain containing 14 protein-coding KCTD14 potassium channel tetramerisation domain containing 14 O BTB/POZ domain-containing protein KCTD14 20121230 -9606 65988 ZNF747 - - HGNC:28350|Ensembl:ENSG00000169955|HPRD:14498|Vega:OTTHUMG00000132401 16 16p11.2 zinc finger protein 747 protein-coding ZNF747 zinc finger protein 747 O KRAB domain-containing protein ZNF747 20121230 -9606 65989 DLK2 RP5-895C5.2 EGFL9 HGNC:21113|Ensembl:ENSG00000171462|HPRD:16855|Vega:OTTHUMG00000014735 6 6p21.1 delta-like 2 homolog (Drosophila) protein-coding DLK2 delta-like 2 homolog (Drosophila) O DLK-2|EGF-like protein 9|EGF-like-domain, multiple 9|epidermal growth factor-like protein 9|protein delta homolog 2 20121230 -9606 65990 FAM173A LA16c-444G9.1 C16orf24 HGNC:14152|Ensembl:ENSG00000103254|HPRD:14500|Vega:OTTHUMG00000121177 16 16p13.3 family with sequence similarity 173, member A protein-coding FAM173A family with sequence similarity 173, member A O protein FAM173A 20121230 -9606 65991 FUNDC2 GS1-273L24.1 DC44|HCBP6|HCC3|PD03104 HGNC:24925|Ensembl:ENSG00000165775|HPRD:06586|Vega:OTTHUMG00000013504 X Xq28 FUN14 domain containing 2 protein-coding FUNDC2 FUN14 domain containing 2 O FUN14 domain-containing protein 2|HCC-3|cervical cancer oncogene 3|cervical cancer proto-oncogene 3 protein|hepatitis C virus core-binding protein 6 20121230 -9606 65992 DDRGK1 - C20orf116|UFBP1|dJ1187M17.3 HGNC:16110|Ensembl:ENSG00000198171|HPRD:12741|Vega:OTTHUMG00000031732 20 20p13 DDRGK domain containing 1 protein-coding DDRGK1 DDRGK domain containing 1 O DDRGK domain-containing protein 1|Dashurin|UFM1-binding protein 1 containing a PCI domain 20121230 -9606 65993 MRPS34 - MRP-S12|MRP-S34|MRPS12 HGNC:16618|MIM:611994|Ensembl:ENSG00000074071|HPRD:17599|Vega:OTTHUMG00000128636 16 16p13.3 mitochondrial ribosomal protein S34 protein-coding MRPS34 mitochondrial ribosomal protein S34 O 28S ribosomal protein S34, mitochondrial|S34mt 20121230 -9606 65996 MGC2752 - - HPRD:14527 19 19q13.43 CENPB DNA-binding domains containing 1 pseudogene pseudo - - - - 20121230 -9606 65997 RASL11B - - HGNC:23804|MIM:612404|Ensembl:ENSG00000128045|HPRD:15216|Vega:OTTHUMG00000102097 4 4q12 RAS-like, family 11, member B protein-coding RASL11B RAS-like, family 11, member B O ras-like protein family member 11B 20121230 -9606 65998 C11orf95 - - HGNC:28449 11 11q13 chromosome 11 open reading frame 95 protein-coding C11orf95 chromosome 11 open reading frame 95 O uncharacterized protein C11orf95 20121230 -9606 65999 LRRC61 - HSPC295 HGNC:21704|Ensembl:ENSG00000127399|HPRD:08326|Vega:OTTHUMG00000158326 7 7q31-q35 leucine rich repeat containing 61 protein-coding LRRC61 leucine rich repeat containing 61 O leucine-rich repeat-containing protein 61 20121230 -9606 66000 TMEM108 UNQ1875/PRO4318 CT124 HGNC:28451|Ensembl:ENSG00000144868|HPRD:11329|Vega:OTTHUMG00000159685 3 3q21 transmembrane protein 108 protein-coding TMEM108 transmembrane protein 108 O cancer/testis antigen 124 20121230 -9606 66001 MLVI4 - - - 8 8q24 Moloney leukemia virus integration site 4, mouse, homolog of other - - - - 20100404 -9606 66002 CYP4F12 UNQ568/PRO1129 F22329_1 HGNC:18857|MIM:611485|Ensembl:ENSG00000186204|HPRD:07102|Vega:OTTHUMG00000164477 19 19p13.1 cytochrome P450, family 4, subfamily F, polypeptide 12 protein-coding CYP4F12 cytochrome P450, family 4, subfamily F, polypeptide 12 O CYPIVF12|cytochrome P450 4F12|cytochrome P450, subfamily IVF, polypeptide 12 20121230 -9606 66004 LYNX1 UNQ871/PRO1889 SLURP2 HGNC:29604|MIM:606110|Ensembl:ENSG00000180155|HPRD:16201|Vega:OTTHUMG00000164694 8 8q24.3 Ly6/neurotoxin 1 protein-coding LYNX1 Ly6/neurotoxin 1 O Ly-6 neurotoxin-like protein 1|SLURP-2|ly-6/neurotoxin-like protein 1|secreted Ly-6/uPAR domain-containing protein 2|secreted Ly-6/uPAR-related protein 2|secreted Ly6/uPAR related protein 2 20121230 -9606 66005 CHID1 GL008 SI-CLP HGNC:28474|Ensembl:ENSG00000177830|HPRD:14550|Vega:OTTHUMG00000133314 11 11p15.5 chitinase domain containing 1 protein-coding CHID1 chitinase domain containing 1 O chitinase domain-containing protein 1|stabilin-1 interacting chitinase-like protein|stabilin-1-interacting chitinase-like protein 20121230 -9606 66008 TRAK2 - ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 HGNC:13206|MIM:607334|Ensembl:ENSG00000115993|HPRD:09547|Vega:OTTHUMG00000132822 2 2q33 trafficking protein, kinesin binding 2 protein-coding TRAK2 trafficking protein, kinesin binding 2 O O-linked N-acetylglucosamine transferase interacting protein 98|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 3|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 3 protein|gamma-aminobutyric acid(A) receptor-interacting factor|milton homolog 2|trafficking kinesin-binding protein 2 20121230 -9606 66035 SLC2A11 - GLUT10|GLUT11|SLC2A11-a|SLC2A11-c HGNC:14239|MIM:610367|Ensembl:ENSG00000133460|HPRD:11571|Vega:OTTHUMG00000166469 22 22q11.23 solute carrier family 2 (facilitated glucose transporter), member 11 protein-coding SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11 O GLUT-10|GLUT-11|facilitative glucose transporter GLUT11|glucose transporter protein 10|glucose transporter protein 11|glucose transporter type 10|glucose transporter type 11|glucose transporter-like protein XI|solute carrier family 2, facilitated glucose transporter member 11 20121230 -9606 66036 MTMR9 - C8orf9|LIP-STYX|MTMR8 HGNC:14596|MIM:606260|Ensembl:ENSG00000104643|HPRD:09377|Vega:OTTHUMG00000090647 8 8p23-p22 myotubularin related protein 9 protein-coding MTMR9 myotubularin related protein 9 O myotubularin related protein 8|myotubularin-related protein 9 20121230 -9606 66037 BOLL - BOULE HGNC:14273|MIM:606165|Ensembl:ENSG00000152430|Vega:OTTHUMG00000132747 2 2q33 bol, boule-like (Drosophila) protein-coding BOLL bol, boule-like (Drosophila) O protein boule-like 20121230 -9606 78986 DUSP26 - DUSP24|LDP-4|MKP8|NATA1|SKRP3 HGNC:28161|Ensembl:ENSG00000133878|HPRD:14421|Vega:OTTHUMG00000163961 8 8p12 dual specificity phosphatase 26 (putative) protein-coding DUSP26 dual specificity phosphatase 26 (putative) O DSP-4|MAP kinase phosphatase 8|MKP-8|Novel amplified gene in thyroid anaplastic cancer|dual specificity phosphatase SKRP3|dual specificity protein phosphatase 26|dual-specificity phosphatase SKRP3|low-molecular-mass dual-specificity phosphatase 4|mitogen-activated protein kinase phosphatase 8 20121230 -9606 78987 CRELD1 UNQ188/PRO214 AVSD2|CIRRIN HGNC:14630|MIM:607170|Ensembl:ENSG00000163703|HPRD:06206|Vega:OTTHUMG00000128653 3 3p25.3 cysteine-rich with EGF-like domains 1 protein-coding CRELD1 cysteine-rich with EGF-like domains 1 O cysteine-rich with EGF-like domain protein 1 20121230 -9606 78988 MRP63 - bMRP63 HGNC:14514|MIM:611997|Ensembl:ENSG00000173141|HPRD:14736|Vega:OTTHUMG00000016532 13 13q12.11 mitochondrial ribosomal protein 63 protein-coding MRP63 mitochondrial ribosomal protein 63 O hMRP63|mitochondrial ribosomal protein bMRP63|ribosomal protein 63, mitochondrial 20121230 -9606 78989 COLEC11 UNQ596/PRO1182 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 HGNC:17213|MIM:612502|Ensembl:ENSG00000118004|HPRD:10847|Vega:OTTHUMG00000090304 2 2p25.3 collectin sub-family member 11 protein-coding COLEC11 collectin sub-family member 11 O collectin kidney protein 1|collectin-11 20121230 -9606 78990 OTUB2 - C14orf137|OTB2|OTU2 HGNC:20351|MIM:608338|Ensembl:ENSG00000089723|HPRD:07620|Vega:OTTHUMG00000171300 14 14q32.12 OTU domain, ubiquitin aldehyde binding 2 protein-coding OTUB2 OTU domain, ubiquitin aldehyde binding 2 O OTU domain-containing ubiquitin aldehyde-binding protein 2|deubiquitinating enzyme OTUB2|otubain-2|ubiquitin thioesterase OTUB2|ubiquitin-specific protease otubain 2|ubiquitin-specific-processing protease OTUB2 20121230 -9606 78991 PCYOX1L PSEC0105 - HGNC:28477|Ensembl:ENSG00000145882|HPRD:14552|Vega:OTTHUMG00000130052 5 5q32 prenylcysteine oxidase 1 like protein-coding PCYOX1L prenylcysteine oxidase 1 like O prenylcysteine oxidase-like 20121230 -9606 78992 YIPF2 - FinGER2 HGNC:28476|Ensembl:ENSG00000130733|HPRD:11332|Vega:OTTHUMG00000180796 19 19p13.2 Yip1 domain family, member 2 protein-coding YIPF2 Yip1 domain family, member 2 O YIP1 family member 2|protein YIPF2 20121230 -9606 78994 PRR14 - - HGNC:28458|Ensembl:ENSG00000156858|HPRD:14541|Vega:OTTHUMG00000132414 16 16p11.2 proline rich 14 protein-coding PRR14 proline rich 14 O proline-rich protein 14 20121230 -9606 78995 C17orf53 - - HGNC:28460|Ensembl:ENSG00000125319|HPRD:08825|Vega:OTTHUMG00000181808 17 17q21.31 chromosome 17 open reading frame 53 protein-coding C17orf53 chromosome 17 open reading frame 53 O uncharacterized protein C17orf53 20121230 -9606 78996 C7orf49 - MRI HGNC:22432|Ensembl:ENSG00000122783|HPRD:08333|Vega:OTTHUMG00000155447 7 7q33 chromosome 7 open reading frame 49 protein-coding C7orf49 chromosome 7 open reading frame 49 O modulator of retrovirus infection homolog 20121230 -9606 78997 GDAP1L1 RP5-881L22.1 dJ881L22.1|dJ995J12.1.1 HGNC:4213|Ensembl:ENSG00000124194|HPRD:17033|Vega:OTTHUMG00000032530 20 20q12 ganglioside induced differentiation associated protein 1-like 1 protein-coding GDAP1L1 ganglioside induced differentiation associated protein 1-like 1 O GDAP1-L1|ganglioside-induced differentiation-associated protein 1-like 1 20121230 -9606 78998 RHPN1-AS1 - C8orf51 HGNC:28457|HPRD:08328 8 8q24 RHPN1 antisense RNA 1 (head to head) miscRNA RHPN1-AS1 RHPN1 antisense RNA 1 (head to head) O - 20121230 -9606 78999 LRFN4 - FIGLER6|SALM3|SALM3. HGNC:28456|MIM:612810|Ensembl:ENSG00000173621|HPRD:14310|Vega:OTTHUMG00000167100 11 11q13.2 leucine rich repeat and fibronectin type III domain containing 4 protein-coding LRFN4 leucine rich repeat and fibronectin type III domain containing 4 O fibronectin type III, immunoglobulin and leucine rich repeat domains 6|leucine-rich repeat and fibronectin type-III domain-containing protein 4 20121230 -9606 79000 AUNIP RP1-317E23.5 AIBP|C1orf135 HGNC:28363|Ensembl:ENSG00000127423|HPRD:08323|Vega:OTTHUMG00000007372 1 1p36.11 aurora kinase A and ninein interacting protein protein-coding AUNIP aurora kinase A and ninein interacting protein O aurora A-binding protein|aurora kinase A and ninein-interacting protein 20121230 -9606 79001 VKORC1 MSTP134 EDTP308|IMAGE3455200|MST134|MST576|VKCFD2|VKOR HGNC:23663|MIM:608547|Ensembl:ENSG00000167397|HPRD:10540|Vega:OTTHUMG00000047408 16 16p11.2 vitamin K epoxide reductase complex, subunit 1 protein-coding VKORC1 vitamin K epoxide reductase complex, subunit 1 O phylloquinone epoxide reductase|vitamin K dependent clotting factors deficiency 2|vitamin K epoxide reductase complex subunit 1|vitamin K1 2,3-epoxide reductase subunit 1|vitamin K1 epoxide reductase (warfarin-sensitive) 20121230 -9606 79002 C19orf43 - fSAP18 HGNC:28424|Ensembl:ENSG00000123144|HPRD:14528|Vega:OTTHUMG00000180347 19 19p13.2 chromosome 19 open reading frame 43 protein-coding C19orf43 chromosome 19 open reading frame 43 O My029 protein|uncharacterized protein C19orf43 20121230 -9606 79003 MIS12 - 2510025F08Rik|KNTC2AP|MTW1|hMis12 HGNC:24967|MIM:609178|Ensembl:ENSG00000167842|HPRD:12379|Vega:OTTHUMG00000102042 17 17p13.2 MIS12, MIND kinetochore complex component, homolog (S. pombe) protein-coding MIS12 MIS12, MIND kinetochore complex component, homolog (S. pombe) O MIS12 homolog|homolog of yeast Mis12|protein MIS12 homolog 20121230 -9606 79004 CUEDC2 HOYS6 C10orf66|bA18I14.5 HGNC:28352|MIM:614142|Ensembl:ENSG00000107874|HPRD:13099|Vega:OTTHUMG00000018958 10 10q24.32 CUE domain containing 2 protein-coding CUEDC2 CUE domain containing 2 O CUE domain-containing protein 2 20121230 -9606 79005 SCNM1 RP11-68I18.6 - HGNC:23136|MIM:608095|Ensembl:ENSG00000163156|HPRD:12162|Vega:OTTHUMG00000012258 1 1q21.3 sodium channel modifier 1 protein-coding SCNM1 sodium channel modifier 1 O - 20121230 -9606 79006 METRN RJD6 C16orf23|c380A1.2 HGNC:14151|MIM:610998|Ensembl:ENSG00000103260|HPRD:14388|Vega:OTTHUMG00000047851 16 16p13.3 meteorin, glial cell differentiation regulator protein-coding METRN meteorin, glial cell differentiation regulator O meteorin 20121230 -9606 79007 DBNDD1 - - HGNC:28455|Ensembl:ENSG00000003249|HPRD:08327|Vega:OTTHUMG00000138984 16 16q24.3 dysbindin (dystrobrevin binding protein 1) domain containing 1 protein-coding DBNDD1 dysbindin (dystrobrevin binding protein 1) domain containing 1 O dysbindin domain-containing protein 1 20121230 -9606 79008 SLX1B - GIYD2 HGNC:28748|Ensembl:ENSG00000181625|HPRD:14673|Vega:OTTHUMG00000132110 16 16p11.2 SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae) protein-coding SLX1B SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae) O GIY-YIG domain-containing protein 1|structure-specific endonuclease subunit SLX1 20121230 -9606 79009 DDX50 - GU2|GUB|RH-II/GuB|mcdrh HGNC:17906|MIM:610373|Ensembl:ENSG00000107625|HPRD:09910|Vega:OTTHUMG00000018362 10 10q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 protein-coding DDX50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 O ATP-dependent RNA helicase DDX50|DEAD box protein 50|RNA helicase II/Gu beta|gu-beta|malignant cell derived RNA helicase|nucleolar protein GU2 20121230 -9606 79012 CAMKV - 1G5|VACAMKL HGNC:28788|MIM:614993|Ensembl:ENSG00000164076|HPRD:11361|Vega:OTTHUMG00000158288 3 3p21.31 CaM kinase-like vesicle-associated protein-coding CAMKV CaM kinase-like vesicle-associated O caM kinase-like vesicle-associated protein|vesicle-associated calmodulin-binding protein 20121230 -9606 79015 LOC79015 - - - 20 20q13.12 uncharacterized LOC79015 miscRNA - - - - 20121230 -9606 79016 DDA1 - C19orf58|PCIA1 HGNC:28360|Ensembl:ENSG00000130311|HPRD:15107 19 19p13.11 DET1 and DDB1 associated 1 protein-coding DDA1 DET1 and DDB1 associated 1 O DET1- and DDB1-associated protein 1|PCIA-1|cross-immune reaction antigen PCIA1|placenta cross-immune reaction antigen 1 20121230 -9606 79017 GGCT - C7orf24|CRF21|GCTG|GGC HGNC:21705|MIM:137170|Ensembl:ENSG00000006625|HPRD:12912|Vega:OTTHUMG00000128593 7 7p15-p14 gamma-glutamylcyclotransferase protein-coding GGCT gamma-glutamylcyclotransferase O cytochrome c-releasing factor 21|gamma -glutamyl cyclotransferase 20121230 -9606 79018 GID4 - C17orf39|VID24 HGNC:28453|Ensembl:ENSG00000141034|HPRD:12683|Vega:OTTHUMG00000059398 17 17p11.2 GID complex subunit 4, VID24 homolog (S. cerevisiae) protein-coding GID4 GID complex subunit 4, VID24 homolog (S. cerevisiae) O glucose-induced degradation protein 4 homolog|vacuolar import and degradation 24|vacuolar import and degradation protein 24 homolog 20121230 -9606 79019 CENPM CTA-250D10.18-008 C22orf18|CENP-M|PANE1|bK250D10.2 HGNC:18352|MIM:610152|Ensembl:ENSG00000100162|HPRD:12798|Vega:OTTHUMG00000151277 22 22q13.2 centromere protein M protein-coding CENPM centromere protein M O interphase centromere complex protein 39|proliferation associated nuclear element 1|proliferation-associated nuclear element protein 1 20121230 -9606 79020 C7orf25 - - HGNC:21703|Ensembl:ENSG00000136197|HPRD:09861|Vega:OTTHUMG00000128869 7 7p14.1 chromosome 7 open reading frame 25 protein-coding C7orf25 chromosome 7 open reading frame 25 O UPF0415 protein C7orf25 20121230 -9606 79022 TMEM106C - - HGNC:28775|Ensembl:ENSG00000134291|HPRD:14690|Vega:OTTHUMG00000169892 12 12q13.1 transmembrane protein 106C protein-coding TMEM106C transmembrane protein 106C O endoplasmic reticulum membrane protein overexpressed in cancer 20121230 -9606 79023 NUP37 - p37 HGNC:29929|MIM:609264|Ensembl:ENSG00000075188|HPRD:14853|Vega:OTTHUMG00000170478 12 12q23.2 nucleoporin 37kDa protein-coding NUP37 nucleoporin 37kDa O nucleoporin Nup37|nup107-160 subcomplex subunit Nup37 20121230 -9606 79024 SMIM2 - C13orf44 HGNC:28776 13 13q14.11 small integral membrane protein 2 unknown SMIM2 small integral membrane protein 2 O - 20121230 -9606 79025 C20orf195 - - HGNC:28764|Ensembl:ENSG00000125531|HPRD:14682|Vega:OTTHUMG00000032980 20 20q13.33 chromosome 20 open reading frame 195 protein-coding C20orf195 chromosome 20 open reading frame 195 O uncharacterized protein C20orf195 20121230 -9606 79026 AHNAK - AHNAKRS HGNC:347|MIM:103390|Ensembl:ENSG00000124942|HPRD:14684|Vega:OTTHUMG00000167558 11 11q12.2 AHNAK nucleoprotein protein-coding AHNAK AHNAK nucleoprotein O AHNAK-related|desmoyokin|neuroblast differentiation-associated protein AHNAK 20121230 -9606 79027 ZNF655 - VIK|VIK-1 HGNC:30899|Ensembl:ENSG00000197343|HPRD:11673|Vega:OTTHUMG00000156637 7 7q22.1 zinc finger protein 655 protein-coding ZNF655 zinc finger protein 655 O vav-1 interacting Kruppel-like protein 20121230 -9606 79029 SPATA5L1 - - HGNC:28762|Ensembl:ENSG00000171763|HPRD:11596|Vega:OTTHUMG00000131425 15 15q21.1 spermatogenesis associated 5-like 1 protein-coding SPATA5L1 spermatogenesis associated 5-like 1 O spermatogenesis-associated protein 5-like protein 1 20121230 -9606 79031 PDCL3 - HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 HGNC:28860|MIM:611678|Ensembl:ENSG00000115539|HPRD:17827|Vega:OTTHUMG00000153141 2 2q11.2 phosducin-like 3 protein-coding PDCL3 phosducin-like 3 O IAP-associated factor VIAF1|VIAF-1|phPL3|phosducin-like protein 3|viral IAP-associated factor 1 20121230 -9606 79033 ERI3 RP5-891H21.3 PINT1|PRNPIP HGNC:17276|MIM:609917|Ensembl:ENSG00000117419|HPRD:15175|Vega:OTTHUMG00000007637 1 1p32 ERI1 exoribonuclease family member 3 protein-coding ERI3 ERI1 exoribonuclease family member 3 O ERI1 exoribonuclease 3|H_RG158K20.1|WUGSC:H_RG158K20.1|enhanced RNAi three prime mRNA exonuclease homolog 3|exoribonuclease 3|prion interactor 1|prion protein interacting protein|prion protein-interacting protein 20121230 -9606 79034 C7orf26 - - HGNC:21702|Ensembl:ENSG00000146576|HPRD:12913|Vega:OTTHUMG00000125517 7 7p22.1 chromosome 7 open reading frame 26 protein-coding C7orf26 chromosome 7 open reading frame 26 O uncharacterized protein C7orf26 20121230 -9606 79035 NABP2 LP3587 OBFC2B|SOSS-B1|SSB1|hSSB1 HGNC:28412|MIM:612104|Ensembl:ENSG00000139579|HPRD:14522|Vega:OTTHUMG00000152527 12 12q13.3 nucleic acid binding protein 2 protein-coding NABP2 nucleic acid binding protein 2 O LP3587|SOSS complex subunit B1|nucleic acid-binding protein 2|oligonucleotide/oligosaccharide-binding fold containing 2B|oligonucleotide/oligosaccharide-binding fold-containing protein 2B|sensor of single-strand DNA complex subunit B1|sensor of ssDNA subunit B1|single strand DNA-binding protein 1|single-stranded DNA-binding protein 1 20121230 -9606 79036 KXD1 - C19orf50|KXDL|MST096|MSTP096 HGNC:28420|Ensembl:ENSG00000105700|HPRD:14526 19 19p13.11 KxDL motif containing 1 protein-coding KXD1 KxDL motif containing 1 O UPF0459 protein C19orf50|kxDL motif-containing protein 1 20121230 -9606 79037 PVRIG - C7orf15 HGNC:32190|Ensembl:ENSG00000213413|Vega:OTTHUMG00000156798 7 7q22.1 poliovirus receptor related immunoglobulin domain containing protein-coding PVRIG poliovirus receptor related immunoglobulin domain containing O poliovirus receptor-related immunoglobulin domain-containing protein|transmembrane protein PVRIG 20121230 -9606 79038 ZFYVE21 - ZF21 HGNC:20760|MIM:613504|Ensembl:ENSG00000100711|HPRD:15733|Vega:OTTHUMG00000171651 14 14q32.33 zinc finger, FYVE domain containing 21 protein-coding ZFYVE21 zinc finger, FYVE domain containing 21 O FYVE domain containing 21|zinc finger FYVE domain-containing protein 21 20121230 -9606 79039 DDX54 - DP97 HGNC:20084|MIM:611665|Ensembl:ENSG00000123064|HPRD:13129|Vega:OTTHUMG00000169676 12 12q24.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 protein-coding DDX54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 O ATP-dependent RNA helicase DDX54|ATP-dependent RNA helicase DP97|DEAD box RNA helicase 97 kDa|DEAD box helicase 97 KDa|DEAD box protein 54 20121230 -9606 79041 TMEM38A - TRIC-A|TRICA HGNC:28462|MIM:611235|Ensembl:ENSG00000072954|HPRD:15537 19 19p13.11 transmembrane protein 38A protein-coding TMEM38A transmembrane protein 38A O trimeric intracellular cation channel type A 20121230 -9606 79042 TSEN34 XXbac-BCX105G6.5 LENG5|PCH2C|SEN34|SEN34L HGNC:15506|MIM:608754|Ensembl:ENSG00000170892|HPRD:10038|Vega:OTTHUMG00000066515 19 19q13.4 tRNA splicing endonuclease 34 homolog (S. cerevisiae) protein-coding TSEN34 tRNA splicing endonuclease 34 homolog (S. cerevisiae) O hsSen34|leukocyte receptor cluster (LRC) member 5|leukocyte receptor cluster member 5|tRNA-intron endonuclease Sen34|tRNA-splicing endonuclease subunit Sen34 20121230 -9606 79047 KCTD15 - - HGNC:23297|Ensembl:ENSG00000153885|HPRD:13765|Vega:OTTHUMG00000180475 19 19q13.11 potassium channel tetramerisation domain containing 15 protein-coding KCTD15 potassium channel tetramerisation domain containing 15 O BTB/POZ domain-containing protein KCTD15 20121230 -9606 79048 SECISBP2 RP11-89K14.1 SBP2 HGNC:30972|MIM:607693|Ensembl:ENSG00000187742|HPRD:07408|Vega:OTTHUMG00000020182 9 9q22.2 SECIS binding protein 2 protein-coding SECISBP2 SECIS binding protein 2 O selenocysteine insertion sequence-binding protein 2 20121230 -9606 79050 NOC4L - NET49|NOC4|UTP19 HGNC:28461|MIM:612819|Ensembl:ENSG00000184967|HPRD:14543|Vega:OTTHUMG00000168260 12 12q24.33 nucleolar complex associated 4 homolog (S. cerevisiae) protein-coding NOC4L nucleolar complex associated 4 homolog (S. cerevisiae) O NOC4 protein homolog|NOC4-like protein|nucleolar complex protein 4 homolog|nucleolar complex-associated protein 4-like protein 20121230 -9606 79051 RPY - - MIM:400004 Y - Retinitis pigmentosa, Y-linked unknown - - - - 20120622 -9606 79052 PTCPRN - PRN1 MIM:605642 1 1q21 Papillary thyroid carcinoma with papillary renal neoplasia unknown - - - - 20120622 -9606 79053 ALG8 HUSSY-02 CDG1H HGNC:23161|MIM:608103|Ensembl:ENSG00000159063|HPRD:10480|Vega:OTTHUMG00000166594 11 11q14.1 asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae) protein-coding ALG8 asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae) O HUSSY-02|asparagine-linked glycosylation 8 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase)|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)|asparagine-linked glycosylation protein 8 homolog|dol-P-Glc:Glc(1)Man(9)GlcNAc(2)-PP-dolichyl alpha-1,3-glucosyltransferase|dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase|dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase|dolichyl-P-glucose:Glc1Man9GlcNAc2-PP-dolichyl-alpha-1,3-glucosyltransferase|probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase 20121230 -9606 79054 TRPM8 - LTRPC6|TRPP8 HGNC:17961|MIM:606678|Ensembl:ENSG00000144481|HPRD:09454|Vega:OTTHUMG00000059129 2 2q37.1 transient receptor potential cation channel, subfamily M, member 8 protein-coding TRPM8 transient receptor potential cation channel, subfamily M, member 8 O LTrpC-6|long transient receptor potential channel 6|short form of the TRPM8 cationic channel|transient receptor potential cation channel subfamily M member 8|transient receptor potential p8|transient receptor potential subfamily M member 8|trp-p8 20121230 -9606 79055 PSMA2P3 - PSMA2L HGNC:43834 2 2q33.1 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 3 pseudo PSMA2P3 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 3 O - 20121230 -9606 79056 PRRG4 - PRGP4|TMG4 HGNC:30799|MIM:611690|Ensembl:ENSG00000135378|HPRD:15187|Vega:OTTHUMG00000166219 11 11p13 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) protein-coding PRRG4 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) O proline-rich Gla protein 4|proline-rich gamma-carboxyglutamic acid protein 4|transmembrane gamma-carboxyglutamic acid protein 4 20121230 -9606 79057 PRRG3 - PRGP3|TMG3 HGNC:30798|MIM:300685|Ensembl:ENSG00000130032|HPRD:06742|Vega:OTTHUMG00000024170 X Xq28 proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) protein-coding PRRG3 proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) O proline-rich Gla protein 3|proline-rich gamma-carboxyglutamic acid protein 3|transmembrane gamma-carboxyglutamic acid protein 3 20121230 -9606 79058 ASPSCR1 - ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 HGNC:13825|MIM:606236|Ensembl:ENSG00000169696|HPRD:06947|Vega:OTTHUMG00000178438 17 17q25.3 alveolar soft part sarcoma chromosome region, candidate 1 protein-coding ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1 O UBX domain protein 9|UBX domain-containing protein 9|alveolar soft part sarcoma chromosomal region candidate gene 1 protein|alveolar soft part sarcoma locus|renal cell carcinoma gene on chromosome 17|renal cell carcinoma, papillary, 17|renal papillary cell carcinoma protein 17|tether containing UBX domain for GLUT4 20121230 -9606 79064 TMEM223 - - HGNC:28464|Ensembl:ENSG00000168569|Vega:OTTHUMG00000167693 11 11q12.3 transmembrane protein 223 protein-coding TMEM223 transmembrane protein 223 O - 20121230 -9606 79065 ATG9A - APG9L1|MGD3208|mATG9 HGNC:22408|MIM:612204|Ensembl:ENSG00000198925|HPRD:07979|Vega:OTTHUMG00000154557 2 2q35 autophagy related 9A protein-coding ATG9A autophagy related 9A O APG9 autophagy 9-like 1|APG9-like 1|ATG9 autophagy related 9 homolog A|autophagy 9-like 1 protein|autophagy-related protein 9A 20121230 -9606 79066 METTL16 - METT10D HGNC:28484|Ensembl:ENSG00000127804|HPRD:14556|Vega:OTTHUMG00000177564 17 17p13.3 methyltransferase like 16 protein-coding METTL16 methyltransferase like 16 O methyltransferase 10 domain containing|methyltransferase 10 domain-containing protein|methyltransferase-like protein 16|putative methyltransferase METT10D 20121230 -9606 79068 FTO - - HGNC:24678|MIM:610966|Ensembl:ENSG00000140718|Vega:OTTHUMG00000158780 16 16q12.2 fat mass and obesity associated protein-coding FTO fat mass and obesity associated O alpha-ketoglutarate-dependent dioxygenase FTO|fat mass and obesity-associated protein|protein fto 20121230 -9606 79070 KDELC1 RP11-484I6.4 EP58|KDEL1 HGNC:19350|MIM:611613|Ensembl:ENSG00000134901|HPRD:11061|Vega:OTTHUMG00000017307 13 13q33 KDEL (Lys-Asp-Glu-Leu) containing 1 protein-coding KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 O ER protein 58|ERp58|KDEL motif-containing 1|KDEL motif-containing protein 1|endoplasmic reticulum resident protein 58 20121230 -9606 79071 ELOVL6 - FACE|FAE|LCE HGNC:15829|MIM:611546|Ensembl:ENSG00000170522|HPRD:13269|Vega:OTTHUMG00000132547 4 4q25 ELOVL fatty acid elongase 6 protein-coding ELOVL6 ELOVL fatty acid elongase 6 O 3-keto acyl-CoA synthase ELOVL6|ELOVL FA elongase 6|ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)|elongation of very long chain fatty acids protein 6|fatty acid elongase 2|fatty acyl-CoA elongase|hELO2|long-chain fatty-acyl elongase 20121230 -9606 79072 FASTKD3 - - HGNC:28758|Ensembl:ENSG00000124279|HPRD:10083|Vega:OTTHUMG00000131029 5 5p15.31 FAST kinase domains 3 protein-coding FASTKD3 FAST kinase domains 3 O FAST kinase domain-containing protein 3 20121230 -9606 79073 TMEM109 - - HGNC:28771|Ensembl:ENSG00000110108|HPRD:14687|Vega:OTTHUMG00000167801 11 11q12.2 transmembrane protein 109 protein-coding TMEM109 transmembrane protein 109 O mg23|mitsugumin-23 20121230 -9606 79074 C2orf49 - asw HGNC:28772|Ensembl:ENSG00000135974|HPRD:14688|Vega:OTTHUMG00000130808 2 2q12.1 chromosome 2 open reading frame 49 protein-coding C2orf49 chromosome 2 open reading frame 49 O ashwin 20121230 -9606 79075 DSCC1 UNQ9337/PRO34008 DCC1 HGNC:24453|MIM:613203|Ensembl:ENSG00000136982|HPRD:13123|Vega:OTTHUMG00000165010 8 8q24.12 defective in sister chromatid cohesion 1 homolog (S. cerevisiae) protein-coding DSCC1 defective in sister chromatid cohesion 1 homolog (S. cerevisiae) O defective in sister chromatid cohesion protein 1 homolog|sister chromatid cohesion protein DCC1 20121230 -9606 79077 DCTPP1 CDA03 RS21C6|XTP3TPA HGNC:28777|Ensembl:ENSG00000179958|HPRD:18310|Vega:OTTHUMG00000132416 16 16p11.2 dCTP pyrophosphatase 1 protein-coding DCTPP1 dCTP pyrophosphatase 1 O XTP3-transactivated gene A protein|XTP3-transactivated protein A|dCTPase 1|deoxycytidine-triphosphatase 1 20121230 -9606 79078 C1orf50 - - HGNC:28795|Ensembl:ENSG00000164008|HPRD:14714|Vega:OTTHUMG00000007568 1 1p34.2 chromosome 1 open reading frame 50 protein-coding C1orf50 chromosome 1 open reading frame 50 O uncharacterized protein C1orf50 20121230 -9606 79080 CCDC86 - - HGNC:28359|MIM:611293|Ensembl:ENSG00000110104|HPRD:08322|Vega:OTTHUMG00000167706 11 11q12.2 coiled-coil domain containing 86 protein-coding CCDC86 coiled-coil domain containing 86 O coiled-coil domain-containing protein 86|cyclon|cytokine-induced protein with coiled-coil domain 20121230 -9606 79081 C11orf48 - - HGNC:28351|Ensembl:ENSG00000162194|HPRD:14499|Vega:OTTHUMG00000167588 11 11q12.3 chromosome 11 open reading frame 48 protein-coding C11orf48 chromosome 11 open reading frame 48 O uncharacterized protein C11orf48 20121230 -9606 79083 MLPH UNQ8200 SLAC2-A HGNC:29643|MIM:606526|Ensembl:ENSG00000115648|HPRD:09409|Vega:OTTHUMG00000133298 2 2q37.3 melanophilin protein-coding MLPH melanophilin O exophilin-3|slp homolog lacking C2 domains a|synaptotagmin-like protein 2a 20121230 -9606 79084 WDR77 HKMT1069 MEP-50|MEP50|Nbla10071|RP11-552M11.3|p44|p44/Mep50 HGNC:29652|MIM:611734|Ensembl:ENSG00000116455|HPRD:14387|Vega:OTTHUMG00000011748 1 1p13.2 WD repeat domain 77 protein-coding WDR77 WD repeat domain 77 O WD repeat-containing protein 77|androgen receptor cofactor p44|methylosome protein 50 20121230 -9606 79085 SLC25A23 - APC2|MCSC2|SCaMC-3 HGNC:19375|MIM:608746|Ensembl:ENSG00000125648|HPRD:16381 19 19p13.3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 protein-coding SLC25A23 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 O calcium-binding mitochondrial carrier protein SCaMC-3|mitochondrial ATP-Mg/Pi carrier protein 2|mitochondrial Ca(2+)-dependent solute carrier protein 2|mitochondrial Ca2+-dependent solute carrier protein 2|short calcium-binding mitochondrial carrier 3|small calcium-binding mitochondrial carrier protein 3|solute carrier family 25 member 23 20121230 -9606 79086 SMIM7 - C19orf42 HGNC:28419|Ensembl:ENSG00000214046|HPRD:14525|Vega:OTTHUMG00000149895 19 19p13.11 small integral membrane protein 7 protein-coding SMIM7 small integral membrane protein 7 O UPF0608 protein C19orf42 20121230 -9606 79087 ALG12 CITF22-1A6.2 CDG1G|ECM39|PP14673|hALG12 HGNC:19358|MIM:607144|Ensembl:ENSG00000182858|HPRD:06189|Vega:OTTHUMG00000150289 22 22q13.33 asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae) protein-coding ALG12 asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae) O asparagine-linked glycosylation 12 homolog (S. cerevisiae, alpha-1,6-mannosyltransferase)|asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)|asparagine-linked glycosylation protein 12 homolog|dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase|dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,6-mannosyltransferase|dolichyl-P-mannose:Man-7-GlcNAc-2-PP-dolichyl-alpha-6-mannosyltransferase|mannosyltransferase ALG12 homolog|membrane protein SB87 20121230 -9606 79088 ZNF426 - - HGNC:20725|Ensembl:ENSG00000130818|HPRD:15787|Vega:OTTHUMG00000180132 19 19p13.2 zinc finger protein 426 protein-coding ZNF426 zinc finger protein 426 O - 20121230 -9606 79089 TMUB2 FP2653 - HGNC:28459|Ensembl:ENSG00000168591|HPRD:14542|Vega:OTTHUMG00000181811 17 17q21.31 transmembrane and ubiquitin-like domain containing 2 protein-coding TMUB2 transmembrane and ubiquitin-like domain containing 2 O transmembrane and ubiquitin-like domain-containing protein 2 20121230 -9606 79090 TRAPPC6A - TRS33 HGNC:23069|MIM:610396|Ensembl:ENSG00000007255|HPRD:14503|Vega:OTTHUMG00000181775 19 19q13.32 trafficking protein particle complex 6A protein-coding TRAPPC6A trafficking protein particle complex 6A O TRAPP complex subunit 6A|trafficking protein particle complex subunit 6A 20121230 -9606 79091 METTL22 LP8272 C16orf68 HGNC:28368|Ensembl:ENSG00000067365|HPRD:08324|Vega:OTTHUMG00000129694 16 16p13.2 methyltransferase like 22 protein-coding METTL22 methyltransferase like 22 O LP8272|methyltransferase-like protein 22 20121230 -9606 79092 CARD14 - BIMP2|CARMA2|PRP|PSORS2|PSS1 HGNC:16446|MIM:607211|Ensembl:ENSG00000141527|HPRD:06235|Vega:OTTHUMG00000177549 17 17q25 caspase recruitment domain family, member 14 protein-coding CARD14 caspase recruitment domain family, member 14 O CARD-containing MAGUK protein 2|bcl10-interacting maguk protein 2|card-maguk protein 2|carma 2|caspase recruitment domain-containing protein 14 20121230 -9606 79094 CHAC1 - - HGNC:28680|MIM:614587|Ensembl:ENSG00000128965|HPRD:14634|Vega:OTTHUMG00000130208 15 15q15.1 ChaC, cation transport regulator homolog 1 (E. coli) protein-coding CHAC1 ChaC, cation transport regulator homolog 1 (E. coli) O ChaC, cation transport regulator-like 1|blocks Notch protein|botch|cation transport regulator-like protein 1 20121230 -9606 79095 C9orf16 EST00098 - HGNC:17823|Ensembl:ENSG00000171159|HPRD:12946|Vega:OTTHUMG00000020731 9 9q34.1 chromosome 9 open reading frame 16 protein-coding C9orf16 chromosome 9 open reading frame 16 O UPF0184 protein C9orf16 20121230 -9606 79096 C11orf49 - - HGNC:28720|Ensembl:ENSG00000149179|HPRD:08332|Vega:OTTHUMG00000166725 11 11p11.2 chromosome 11 open reading frame 49 protein-coding C11orf49 chromosome 11 open reading frame 49 O UPF0705 protein C11orf49 20121230 -9606 79097 TRIM48 - RNF101 HGNC:19021|Ensembl:ENSG00000150244|HPRD:15565|Vega:OTTHUMG00000157011 11 11q11 tripartite motif containing 48 protein-coding TRIM48 tripartite motif containing 48 O RING finger protein 101|tripartite motif-containing 48|tripartite motif-containing protein 48 20121230 -9606 79098 C1orf116 - SARG HGNC:28667|MIM:611680|Ensembl:ENSG00000182795|HPRD:15294|Vega:OTTHUMG00000036580 1 1q32.1 chromosome 1 open reading frame 116 protein-coding C1orf116 chromosome 1 open reading frame 116 O specifically androgen-regulated gene protein|specifically androgen-regulated protein 20121230 -9606 79100 LINC00626 - - HGNC:44257 1 1q24.2 long intergenic non-protein coding RNA 626 miscRNA LINC00626 long intergenic non-protein coding RNA 626 O - 20121230 -9606 79101 TAF1D - JOSD3|RAFI41|TAF(I)41|TAFI41 HGNC:28759|MIM:612823|Ensembl:ENSG00000166012|HPRD:14679|Vega:OTTHUMG00000167451 11 11q21 TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa protein-coding TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa O Josephin domain containing 3|RNA polymerase I-specific TBP-associated factor 41 kDa|TATA box-binding protein-associated factor 1D|TATA box-binding protein-associated factor RNA polymerase I subunit D|TBP-associated factor 1D|transcription initiation factor SL1/TIF-IB subunit D 20121230 -9606 79102 RNF26 - - HGNC:14646|MIM:606130|Ensembl:ENSG00000173456|HPRD:05842|Vega:OTTHUMG00000166171 11 11q23 ring finger protein 26 protein-coding RNF26 ring finger protein 26 O RING finger protein 26|ring finger protein with leucine zipper 20121230 -9606 79104 MEG8 - Bsr|Irm|LINC00024|NCRNA00024|Rian HGNC:14574|MIM:613648 14 14q32.31 maternally expressed 8 (non-protein coding) miscRNA MEG8 maternally expressed 8 (non-protein coding) O - 20121230 -9606 79109 MAPKAP1 RP11-269P11.1 JC310|MIP1|SIN1|SIN1b|SIN1g HGNC:18752|MIM:610558|Ensembl:ENSG00000119487|HPRD:17464|Vega:OTTHUMG00000020683 9 9q33.3 mitogen-activated protein kinase associated protein 1 protein-coding MAPKAP1 mitogen-activated protein kinase associated protein 1 O MEKK2-interacting protein 1|SAPK-interacting protein 1|TORC2 subunit MAPKAP1|mSIN1|mitogen-activated protein kinase 2-associated protein 1|ras inhibitor MGC2745|stress-activated map kinase interacting protein 1|stress-activated map kinase-interacting protein 1|stress-activated protein kinase-interacting 1|target of rapamycin complex 2 subunit MAPKAP1 20121230 -9606 79132 DHX58 - D11LGP2|D11lgp2e|LGP2|RLR-3 HGNC:29517|MIM:608588|Ensembl:ENSG00000108771|HPRD:13115|Vega:OTTHUMG00000133493 17 17q21.2 DEXH (Asp-Glu-X-His) box polypeptide 58 protein-coding DHX58 DEXH (Asp-Glu-X-His) box polypeptide 58 O RIG-I-like receptor 3|RIG-I-like receptor LGP2|RLR|RNA helicase LGP2|ortholog of mouse D11lgp2|probable ATP-dependent RNA helicase DHX58|probable ATP-dependent helicase LGP2|protein D11Lgp2 homolog 20121230 -9606 79133 NDUFAF5 RP5-842G6.2 C20orf7|bA526K24.2|dJ842G6.1 HGNC:15899|MIM:612360|Ensembl:ENSG00000101247|HPRD:12780|Vega:OTTHUMG00000031909 20 20p12.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 protein-coding NDUFAF5 NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5|probable methyltransferase C20orf7, mitochondrial 20121230 -9606 79134 TMEM185B - FAM11B HGNC:18896|Ensembl:ENSG00000226479|Vega:OTTHUMG00000154402 2 2q14.2 transmembrane protein 185B protein-coding TMEM185B transmembrane protein 185B O ee3_2|family with sequence similarity 11, member B|putative transmembrane protein 185B|transmembrane protein 185B (pseudogene) 20121230 -9606 79135 APOO My025 FAM121B HGNC:28727|MIM:300753|Ensembl:ENSG00000184831|HPRD:06657|Vega:OTTHUMG00000021259 X Xp22.11 apolipoprotein O protein-coding APOO apolipoprotein O O brain my025|family with sequence similarity 121B 20121230 -9606 79136 LY6G6E DAQB-350E15.6 C6orf22|G6e HGNC:13934|MIM:610437|HPRD:14330 6 6p21.3 lymphocyte antigen 6 complex, locus G6E (pseudogene) pseudo LY6G6E lymphocyte antigen 6 complex, locus G6E (pseudogene) O - 20121230 -9606 79137 FAM134A - C2orf17 HGNC:28450|Ensembl:ENSG00000144567|HPRD:12807|Vega:OTTHUMG00000154577 2 2q35 family with sequence similarity 134, member A protein-coding FAM134A family with sequence similarity 134, member A O protein FAM134A 20121230 -9606 79139 DERL1 UNQ243/PRO276 DER-1|DER1 HGNC:28454|MIM:608813|Ensembl:ENSG00000136986|HPRD:12302|Vega:OTTHUMG00000165080 8 8q24.13 derlin 1 protein-coding DERL1 derlin 1 O DERtrin-1|Der1-like domain family, member 1|degradation in endoplasmic reticulum protein 1|derlin-1 20121230 -9606 79140 CCDC28B - RP4-622L5.5 HGNC:28163|MIM:610162|Ensembl:ENSG00000160050|HPRD:14422|Vega:OTTHUMG00000005738 1 1p36.11-p34.2 coiled-coil domain containing 28B protein-coding CCDC28B coiled-coil domain containing 28B O coiled-coil domain-containing protein 28B 20121230 -9606 79142 PHF23 - hJUNE-1b HGNC:28428|MIM:612910|Ensembl:ENSG00000040633|Vega:OTTHUMG00000177972 17 17p13.1 PHD finger protein 23 protein-coding PHF23 PHD finger protein 23 O PDH-containing protein JUNE-1|PHD finger protein 23a 20121230 -9606 79143 MBOAT7 XXbac-BCX105G6.4 BB1|LENG4|LPIAT|LRC4|MBOA7|OACT7|hMBOA-7 HGNC:15505|MIM:606048|Ensembl:ENSG00000125505|HPRD:06925|Vega:OTTHUMG00000066516 19 19q13.4 membrane bound O-acyltransferase domain containing 7 protein-coding MBOAT7 membrane bound O-acyltransferase domain containing 7 O 1-acylglycerophosphatidylinositol O-acyltransferase|LPLAT 7|bladder and breast carcinoma-overexpressed gene 1 protein|h-mboa-7|leukocyte receptor cluster (LRC) member 4|lyso-PI acyltransferase|lysophosphatidylinositol acyltransferase|lysophospholipid acyltransferase 7|malignant cell expression-enhanced gene/tumor progression-enhanced 20121230 -9606 79144 PPDPF RP4-697K14.13-004 C20orf149|dJ697K14.9|exdpf HGNC:16142|Ensembl:ENSG00000125534|HPRD:12750|Vega:OTTHUMG00000032978 20 20q13.33 pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) protein-coding PPDPF pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) O exocrine differentiation and proliferation factor|pancreatic progenitor cell differentiation and proliferation factor 20121230 -9606 79145 CHCHD7 - COX23 HGNC:28314|MIM:611238|Ensembl:ENSG00000170791|HPRD:13048|Vega:OTTHUMG00000074081 8 8q12.1 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 O COX23 cytochrome c oxidase assembly homolog|coiled-coil-helix-coiled-coil-helix domain-containing protein 7 20121230 -9606 79147 FKRP - LGMD2I|MDC1C|MDDGA5|MDDGB5|MDDGC5 HGNC:17997|MIM:606596|Ensembl:ENSG00000181027|HPRD:05962 19 19q13.32 fukutin related protein protein-coding FKRP fukutin related protein O fukutin-related protein 20121230 -9606 79148 MMP28 UNQ1893/PRO4339 EPILYSIN|MM28|MMP-28|MMP25 HGNC:14366|MIM:608417|Ensembl:ENSG00000129270|HPRD:07464|Vega:OTTHUMG00000180013 17 17q21.1 matrix metallopeptidase 28 protein-coding MMP28 matrix metallopeptidase 28 O matrix metalloproteinase 28|matrix metalloproteinase-28 20121230 -9606 79149 ZSCAN5A - ZNF495|ZSCAN5 HGNC:23710|Ensembl:ENSG00000131848|HPRD:15900|Vega:OTTHUMG00000181883 19 19q13.43 zinc finger and SCAN domain containing 5A protein-coding ZSCAN5A zinc finger and SCAN domain containing 5A O zinc finger and SCAN domain containing 5|zinc finger and SCAN domain-containing protein 5A|zinc finger protein 495 20121230 -9606 79150 MGC4859 - - - 7 7p uncharacterized LOC79150 unknown - - - - 20120508 -9606 79152 FA2H - FAAH|FAH1|FAXDC1|SCS7|SPG35 HGNC:21197|MIM:611026|Ensembl:ENSG00000103089|HPRD:16873|Vega:OTTHUMG00000137603 16 16q23 fatty acid 2-hydroxylase protein-coding FA2H fatty acid 2-hydroxylase O fatty acid alpha-hydroxylase|fatty acid hydroxylase domain containing 1|spastic paraplegia 35 (autosomal recessive) 20121230 -9606 79153 GDPD3 - - HGNC:28638|Ensembl:ENSG00000102886|HPRD:08330|Vega:OTTHUMG00000132106 16 16p11.2 glycerophosphodiester phosphodiesterase domain containing 3 protein-coding GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 O glycerophosphodiester phosphodiesterase domain-containing protein 3 20121230 -9606 79154 DHRS11 UNQ836/PRO1774 ARPG836|SDR24C1 HGNC:28639|Ensembl:ENSG00000108272|HPRD:08331|Vega:OTTHUMG00000133062 17 17q12 dehydrogenase/reductase (SDR family) member 11 protein-coding DHRS11 dehydrogenase/reductase (SDR family) member 11 O dehydrogenase/reductase SDR family member 11|short chain dehydrogenase/reductase family 24C, member 1|short-chain dehydrogenase/reductase 20121230 -9606 79155 TNIP2 RP3-474M20.1 ABIN2|FLIP1|KLIP HGNC:19118|MIM:610669|Ensembl:ENSG00000168884|HPRD:18207|Vega:OTTHUMG00000090267 4 4p16.3 TNFAIP3 interacting protein 2 protein-coding TNIP2 TNFAIP3 interacting protein 2 O A20-binding inhibitor of NF-kappa-B activation 2|A20-binding inhibitor of NF-kappaB activation-2|TNFAIP3-interacting protein 2|fetal liver LKB1-interacting protein 20121230 -9606 79156 PLEKHF1 - APPD|PHAFIN1|ZFYVE15 HGNC:20764|Ensembl:ENSG00000166289|HPRD:15146|Vega:OTTHUMG00000182097 19 19q12 pleckstrin homology domain containing, family F (with FYVE domain) member 1 protein-coding PLEKHF1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 O PH and FYVE domain-containing protein 1|PH domain-containing family F member 1|apoptosis-inducing protein D|lysosome-associated apoptosis-inducing protein containing PH and FYVE domains|phafin 1|phafin-1|pleckstrin homology domain-containing family F member 1|zinc finger FYVE domain-containing protein 15 20121230 -9606 79157 MFSD11 - ET HGNC:25458|Ensembl:ENSG00000092931|HPRD:13281|Vega:OTTHUMG00000180484 17 17q25 major facilitator superfamily domain containing 11 protein-coding MFSD11 major facilitator superfamily domain containing 11 O UNC93-like protein MFSD11|major facilitator superfamily domain-containing protein 11|protein ET 20121230 -9606 79158 GNPTAB - GNPTA|ICD HGNC:29670|MIM:607840|Ensembl:ENSG00000111670|HPRD:11350|Vega:OTTHUMG00000170444 12 12q23.2 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits protein-coding GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits O GlcNAc phosphotransferase|N-acetylglucosamine-1-phosphotransferase subunits alpha/beta|UDP-N-acetylglucosamine-1-phosphotransferase subunits alpha/beta|UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosamine|glcNAc-1-phosphotransferase subunits alpha/beta|glucosamine (UDP-N-acetyl)-lysosomal-enzyme N-acetylglucosamine phosphotransferase|stealth protein GNPTAB 20121230 -9606 79159 NOL12 - Nop25|dJ37E16.7 HGNC:28585|Ensembl:ENSG00000256872|HPRD:17537|Vega:OTTHUMG00000150660 22 22q13.1 nucleolar protein 12 protein-coding NOL12 nucleolar protein 12 O - 20121230 -9606 79160 MGC4294 - - - 20 20q13.32 uncharacterized MGC4294 miscRNA - - - - 20121230 -9606 79161 TMEM243 - C7orf23|MM-TRAG HGNC:21707|Ensembl:ENSG00000135185|HPRD:12911|Vega:OTTHUMG00000130823 7 7q21.12 transmembrane protein 243, mitochondrial protein-coding TMEM243 transmembrane protein 243, mitochondrial O MDR1 and mitochondrial taxol resistance associated|transmembrane protein C7orf23 20121230 -9606 79165 LENG1 XXbac-BCX105G6.2 - HGNC:15502|Ensembl:ENSG00000105617|HPRD:13985|Vega:OTTHUMG00000066486 19 19q13.4 leukocyte receptor cluster (LRC) member 1 protein-coding LENG1 leukocyte receptor cluster (LRC) member 1 O leukocyte receptor cluster member 1 20121230 -9606 79166 LILRP2 - CD85m|ILT10|LILRA5 HGNC:15497|HPRD:13736 19 19q13.4 leukocyte immunoglobulin-like receptor pseudogene 2 pseudo LILRP2 leukocyte immunoglobulin-like receptor pseudogene 2 O - 20121230 -9606 79167 LILRP1 - CD85l|ILT9|LILRA6P HGNC:15496 19 19q13.4 leukocyte immunoglobulin-like receptor pseudogene 1 pseudo LILRP1 leukocyte immunoglobulin-like receptor pseudogene 1 O - 20121230 -9606 79168 LILRA6 - CD85b|ILT5|ILT8|LILRB3|LILRB6 HGNC:15495|Ensembl:ENSG00000244482|HPRD:13737|Vega:OTTHUMG00000066635 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 protein-coding LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 O ILT-8|immunoglobulin-like transcript 5|immunoglobulin-like transcript 8|leukocyte Ig-like receptor|leukocyte immunoglobulin-like receptor subfamily A member 6|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 6 20121230 -9606 79169 C1orf35 - MMTAG2|hMMTAG2 HGNC:19032|Ensembl:ENSG00000143793|HPRD:08512|HPRD:10090|Vega:OTTHUMG00000037793 1 1q42.13 chromosome 1 open reading frame 35 protein-coding C1orf35 chromosome 1 open reading frame 35 O multiple myeloma transforming 2|multiple myeloma tumor-associated protein 2 20121230 -9606 79170 PRR15L - ATAD4 HGNC:28149|Ensembl:ENSG00000167183|HPRD:14412|Vega:OTTHUMG00000178297 17 17q21.32 proline rich 15-like protein-coding PRR15L proline rich 15-like O ATPase family, AAA domain containing 4|proline-rich protein 15-like protein 20121230 -9606 79171 RBM42 - - HGNC:28117|MIM:613232|Ensembl:ENSG00000126254|HPRD:11303|Vega:OTTHUMG00000182063 19 19q13.12 RNA binding motif protein 42 protein-coding RBM42 RNA binding motif protein 42 O RNA-binding motif protein 42|RNA-binding protein 42 20121230 -9606 79172 CENPO - CENP-O|ICEN-36|MCM21R HGNC:28152|MIM:611504|Ensembl:ENSG00000138092|HPRD:14414|Vega:OTTHUMG00000125525 2 2p23.3 centromere protein O protein-coding CENPO centromere protein O O centromeric protein O|interphase centromere complex protein 36 20121230 -9606 79173 C19orf57 - - HGNC:28153|Ensembl:ENSG00000132016|HPRD:14415|Vega:OTTHUMG00000181851 19 19p13.12 chromosome 19 open reading frame 57 protein-coding C19orf57 chromosome 19 open reading frame 57 O pre-T/NK cell associated protein (3B3)|pre-T/NK cell-associated protein 3B3|uncharacterized protein C19orf57 20121230 -9606 79174 CRELD2 CITF22-1A6.1 - HGNC:28150|MIM:607171|Ensembl:ENSG00000184164|HPRD:08455|Vega:OTTHUMG00000150292 22 22q13.33 cysteine-rich with EGF-like domains 2 protein-coding CRELD2 cysteine-rich with EGF-like domains 2 O cysteine-rich with EGF-like domain protein 2 20121230 -9606 79175 ZNF343 RP4-734P14.3 dJ734P14.5 HGNC:16017|Ensembl:ENSG00000088876|Ensembl:ENSG00000256566|HPRD:18327|Vega:OTTHUMG00000031701|Vega:OTTHUMG00000168016 20 20p13 zinc finger protein 343 protein-coding ZNF343 zinc finger protein 343 O - 20121230 -9606 79176 FBXL15 RP11-18I14.1 FBXO37|Fbl15|JET|PSD HGNC:28155|MIM:610287|Ensembl:ENSG00000107872|Vega:OTTHUMG00000018957 10 10q24.32 F-box and leucine-rich repeat protein 15 protein-coding FBXL15 F-box and leucine-rich repeat protein 15 O F-box only protein 37|F-box/LRR-repeat protein 15|pleckstrin and Sec7 domain protein 20121230 -9606 79177 ZNF576 - - HGNC:28357|Ensembl:ENSG00000124444|HPRD:15855|Vega:OTTHUMG00000165479 19 19q13.31 zinc finger protein 576 protein-coding ZNF576 zinc finger protein 576 O - 20121230 -9606 79178 THTPA - THTP|THTPASE HGNC:18987|MIM:611612|Ensembl:ENSG00000259431|HPRD:15505|Vega:OTTHUMG00000172558 14 14q11.2 thiamine triphosphatase protein-coding THTPA thiamine triphosphatase O thiamine-triphosphatase 20121230 -9606 79179 FHA2 - FHII MIM:605635 7 7p22 Hyperaldosteronism, familial, type II unknown - - - - 20120622 -9606 79180 EFHD2 RP3-467K16.3 SWS1 HGNC:28670|Ensembl:ENSG00000142634|HPRD:13266|Vega:OTTHUMG00000002254 1 1p36.21 EF-hand domain family, member D2 protein-coding EFHD2 EF-hand domain family, member D2 O EF hand domain containing 2|EF hand domain family, member D2|EF-hand domain-containing protein D2|swiprosin 1|swiprosin-1 20121230 -9606 79183 TTPAL RP1-179M20.4 C20orf121 HGNC:16114|Ensembl:ENSG00000124120|HPRD:09837|Vega:OTTHUMG00000032536 20 20q13.12 tocopherol (alpha) transfer protein-like protein-coding TTPAL tocopherol (alpha) transfer protein-like O alpha-tocopherol transfer protein-like 20121230 -9606 79184 BRCC3 RP11-143H17.2 BRCC36|C6.1A|CXorf53 HGNC:24185|MIM:300617|Ensembl:ENSG00000185515|HPRD:06465|Vega:OTTHUMG00000022658 X Xq28 BRCA1/BRCA2-containing complex, subunit 3 protein-coding BRCC3 BRCA1/BRCA2-containing complex, subunit 3 O BRCA1-A complex subunit BRCC36|BRCA1/BRCA2-containing complex subunit 36|BRISC complex subunit BRCC36|lys-63-specific deubiquitinase BRCC36 20121230 -9606 79187 FSD1 VLP27 GLFND|MIR1 HGNC:13745|MIM:609828|Ensembl:ENSG00000105255|HPRD:17021 19 19p13.3 fibronectin type III and SPRY domain containing 1 protein-coding FSD1 fibronectin type III and SPRY domain containing 1 O MID1-related protein 1|fibronectin type 3 and SPRY (spla, ryanodine) domain containing (with coiled-coil motif) 1|fibronectin type 3 and SPRY domain containing 1|fibronectin type III and SPRY domain-containing protein 1|microtubule-associated protein GLFND|midline 1-related protein 1 20121230 -9606 79188 TMEM43 UNQ2564/PRO6244 ARVC5|ARVD5|LUMA HGNC:28472|MIM:612048|Ensembl:ENSG00000170876|HPRD:15541|Vega:OTTHUMG00000129802 3 3p25.1 transmembrane protein 43 protein-coding TMEM43 transmembrane protein 43 O - 20121230 -9606 79190 IRX6 - IRX-3|IRX7|IRXB3 HGNC:14675|MIM:606196|Ensembl:ENSG00000159387|HPRD:12091|Vega:OTTHUMG00000172239 16 16q12.2 iroquois homeobox 6 protein-coding IRX6 iroquois homeobox 6 O homeodomain protein IRXB3|iroquois homeobox protein 6|iroquois homeobox protein 7|iroquois-class homeodomain protein IRX-6 20121230 -9606 79191 IRX3 - IRX-1|IRXB1 HGNC:14360|MIM:612985|Ensembl:ENSG00000177508|HPRD:17162|Vega:OTTHUMG00000133200 16 16q12.2 iroquois homeobox 3 protein-coding IRX3 iroquois homeobox 3 O homeodomain protein IRXB1|iroquois homeobox protein 3|iroquois-class homeodomain protein IRX-1|iroquois-class homeodomain protein IRX-3 20121230 -9606 79192 IRX1 - IRX-5|IRXA1 HGNC:14358|MIM:606197|Ensembl:ENSG00000170549|HPRD:16203|Vega:OTTHUMG00000161632 5 5p15.3 iroquois homeobox 1 protein-coding IRX1 iroquois homeobox 1 O homeodomain protein IRXA1|iroquois homeobox protein 1|iroquois-class homeodomain protein IRX-1 20121230 -9606 79228 THOC6 PSEC0006 WDR58|fSAP35 HGNC:28369|Ensembl:ENSG00000131652|HPRD:14504|Vega:OTTHUMG00000177451 16 16p13.3 THO complex 6 homolog (Drosophila) protein-coding THOC6 THO complex 6 homolog (Drosophila) O THO complex subunit 6 homolog|WD repeat domain 58|WD repeat-containing protein 58|functional spliceosome-associated protein 35 20121230 -9606 79230 ZNF557 - - HGNC:28632|Ensembl:ENSG00000130544|HPRD:15840 19 19p13.2 zinc finger protein 557 protein-coding ZNF557 zinc finger protein 557 O - 20121230 -9606 79231 ZNF33AP1 - BA393J16.4|ZNF33CP HGNC:30957 10 10p11 zinc finger protein 33A pseudogene 1 pseudo ZNF33AP1 zinc finger protein 33A pseudogene 1 O - 20121230 -9606 79232 ZNF37C - BA775A3.1 HGNC:29445 10 10p11 zinc finger protein 37C, pseudogene pseudo ZNF37C zinc finger protein 37C, pseudogene O - 20121230 -9606 79258 MMEL1 RP3-395M20.11-001 MMEL2|NEP2|NEPII|NL1|NL2|SEP HGNC:14668|Ensembl:ENSG00000142606|HPRD:07024|Vega:OTTHUMG00000000846 1 1p36 membrane metallo-endopeptidase-like 1 protein-coding MMEL1 membrane metallo-endopeptidase-like 1 O NEP2(m)|membrane metallo-endopeptidase-like 2|neprilysin II|neprilysin-2|soluble secreted endopeptidase|zinc metallopeptidase 20121230 -9606 79269 DCAF10 - WDR32 HGNC:23686|Ensembl:ENSG00000122741|HPRD:08319|Vega:OTTHUMG00000019934 9 9p13.2 DDB1 and CUL4 associated factor 10 protein-coding DCAF10 DDB1 and CUL4 associated factor 10 O DDB1- and CUL4-associated factor 10|WD repeat domain 32|WD repeat-containing protein 32 20121230 -9606 79272 OR52X1P - - HGNC:14790 11 11p15.4 olfactory receptor, family 52, subfamily X, member 1 pseudogene pseudo OR52X1P olfactory receptor, family 52, subfamily X, member 1 pseudogene O - 20121230 -9606 79273 OR7E94P - - HGNC:14789 4 4q21.21 olfactory receptor, family 7, subfamily E, member 94 pseudogene pseudo OR7E94P olfactory receptor, family 7, subfamily E, member 94 pseudogene O - 20121230 -9606 79274 OR52L2P - OR52L2 HGNC:14788 11 11p15.4 olfactory receptor, family 52, subfamily L, member 2 pseudogene pseudo OR52L2P olfactory receptor, family 52, subfamily L, member 2 pseudogene O - 20121230 -9606 79282 OR7E93P - OR7E131P HGNC:14780 3 3q21.2 olfactory receptor, family 7, subfamily E, member 93 pseudogene pseudo OR7E93P olfactory receptor, family 7, subfamily E, member 93 pseudogene O - 20121230 -9606 79283 OR5P1P - - HGNC:14779 11 11p15.4 olfactory receptor, family 5, subfamily P, member 1 pseudogene pseudo OR5P1P olfactory receptor, family 5, subfamily P, member 1 pseudogene O - 20121230 -9606 79289 OR5H8P - OR3-7 HGNC:14773 3 3q12.1 olfactory receptor, family 5, subfamily H, member 8 pseudogene pseudo OR5H8P olfactory receptor, family 5, subfamily H, member 8 pseudogene O - 20121230 -9606 79290 OR13A1 - - HGNC:14772|Ensembl:ENSG00000256574|HPRD:14904|Vega:OTTHUMG00000018080 10 10q11.21 olfactory receptor, family 13, subfamily A, member 1 protein-coding OR13A1 olfactory receptor, family 13, subfamily A, member 1 O olfactory receptor 13A1|olfactory receptor OR10-3|seven transmembrane helix receptor 20121230 -9606 79291 OR5H7P - OR3-6 HGNC:14771 3 3q12.1 olfactory receptor, family 5, subfamily H, member 7 pseudogene pseudo OR5H7P olfactory receptor, family 5, subfamily H, member 7 pseudogene O - 20121230 -9606 79294 OR4C7P - - HGNC:14768 11 11p11.12 olfactory receptor, family 4, subfamily C, member 7 pseudogene pseudo OR4C7P olfactory receptor, family 4, subfamily C, member 7 pseudogene O - 20121230 -9606 79295 OR5H6 - OR3-11 HGNC:14767|Ensembl:ENSG00000230301|HPRD:17761|Vega:OTTHUMG00000160078 3 3q12.1 olfactory receptor, family 5, subfamily H, member 6 protein-coding OR5H6 olfactory receptor, family 5, subfamily H, member 6 O olfactory receptor 5H6|olfactory receptor OR3-11 20121230 -9606 79296 OR52E1 - OR52E1P HGNC:14766 11 11p15.4 olfactory receptor, family 52, subfamily E, member 1 (gene/pseudogene) pseudo OR52E1 olfactory receptor, family 52, subfamily E, member 1 (gene/pseudogene) O - 20121230 -9606 79297 OR5H5P - OR3-3 HGNC:14765 3 3q12.1 olfactory receptor, family 5, subfamily H, member 5 pseudogene pseudo OR5H5P olfactory receptor, family 5, subfamily H, member 5 pseudogene O - 20121230 -9606 79299 OR5H4P - OR3-5 HGNC:14763 3 3q12.1 olfactory receptor, family 5, subfamily H, member 4 pseudogene pseudo OR5H4P olfactory receptor, family 5, subfamily H, member 4 pseudogene O - 20121230 -9606 79300 OR51P1P - OR51P2P HGNC:14762 11 11p15.4 olfactory receptor, family 51, subfamily P, member 1 pseudogene pseudo OR51P1P olfactory receptor, family 51, subfamily P, member 1 pseudogene O - 20121230 -9606 79301 OR9L1P - OR9L2P HGNC:14761 11 11q12.1 olfactory receptor, family 9, subfamily L, member 1 pseudogene pseudo OR9L1P olfactory receptor, family 9, subfamily L, member 1 pseudogene O - 20121230 -9606 79302 OR52J1P - - HGNC:14760 11 11p15.4 olfactory receptor, family 52, subfamily J, member 1 pseudogene pseudo OR52J1P olfactory receptor, family 52, subfamily J, member 1 pseudogene O - 20121230 -9606 79306 OR4K7P - OR4K10P HGNC:14756 18 18p11.21 olfactory receptor, family 4, subfamily K, member 7 pseudogene pseudo OR4K7P olfactory receptor, family 4, subfamily K, member 7 pseudogene O - 20121230 -9606 79308 OR4P1P - OR4P2P HGNC:14754 11 11q11 olfactory receptor, family 4, subfamily P, member 1 pseudogene pseudo OR4P1P olfactory receptor, family 4, subfamily P, member 1 pseudogene O - 20121230 -9606 79309 OR5H3P - - HGNC:14753 3 3q12.1 olfactory receptor, family 5, subfamily H, member 3 pseudogene pseudo OR5H3P olfactory receptor, family 5, subfamily H, member 3 pseudogene O - 20121230 -9606 79310 OR5H2 - OR3-10 HGNC:14752|Ensembl:ENSG00000197938|HPRD:15042|Vega:OTTHUMG00000160080 3 3q12.1 olfactory receptor, family 5, subfamily H, member 2 protein-coding OR5H2 olfactory receptor, family 5, subfamily H, member 2 O olfactory receptor 5H2|olfactory receptor OR3-10 20121230 -9606 79312 OR1AA1P - - HGNC:14750 X Xq26.2 olfactory receptor, family 1, subfamily AA, member 1 pseudogene pseudo OR1AA1P olfactory receptor, family 1, subfamily AA, member 1 pseudogene O - 20121230 -9606 79313 OR2AD1P - OR2AD1|hs6M1-8P HGNC:14749 6 6p22.1 olfactory receptor, family 2, subfamily AD, member 1 pseudogene pseudo OR2AD1P olfactory receptor, family 2, subfamily AD, member 1 pseudogene O - 20121230 -9606 79314 OR4K6P - - HGNC:14748 14 14q11.2 olfactory receptor, family 4, subfamily K, member 6 pseudogene pseudo OR4K6P olfactory receptor, family 4, subfamily K, member 6 pseudogene O - 20121230 -9606 79315 OR7E91P - - HGNC:14747 2 2p13.3 olfactory receptor, family 7, subfamily E, member 91 pseudogene pseudo OR7E91P olfactory receptor, family 7, subfamily E, member 91 pseudogene O - 20121230 -9606 79316 OR8B9P - - HGNC:14746 11 11q24.2 olfactory receptor, family 8, subfamily B, member 9 pseudogene pseudo OR8B9P olfactory receptor, family 8, subfamily B, member 9 pseudogene O - 20121230 -9606 79317 OR4K5 - OR14-16 HGNC:14745|Ensembl:ENSG00000176281|HPRD:14981|Vega:OTTHUMG00000170627 14 14q11.2 olfactory receptor, family 4, subfamily K, member 5 protein-coding OR4K5 olfactory receptor, family 4, subfamily K, member 5 O olfactory receptor 4K5|olfactory receptor OR14-16 20121230 -9606 79318 OR4K4P - - HGNC:14744 14 14q11.2 olfactory receptor, family 4, subfamily K, member 4 pseudogene pseudo OR4K4P olfactory receptor, family 4, subfamily K, member 4 pseudogene O - 20121230 -9606 79321 OR6M3P - - HGNC:14741 11 11q24.1 olfactory receptor, family 6, subfamily M, member 3 pseudogene pseudo OR6M3P olfactory receptor, family 6, subfamily M, member 3 pseudogene O - 20121230 -9606 79322 OR4N1P - OR14-12|OR14-6 HGNC:14740 14 14q11.2 olfactory receptor, family 4, subfamily N, member 1 pseudogene pseudo OR4N1P olfactory receptor, family 4, subfamily N, member 1 pseudogene O - 20121230 -9606 79323 OR6E1P - - HGNC:14739 14 14q11.2 olfactory receptor, family 6, subfamily E, member 1 pseudogene pseudo OR6E1P olfactory receptor, family 6, subfamily E, member 1 pseudogene O - 20121230 -9606 79324 OR51G1 - OR11-29|OR51G3P HGNC:14738|Ensembl:ENSG00000176879|HPRD:14997|Vega:OTTHUMG00000066532 11 11p15.4 olfactory receptor, family 51, subfamily G, member 1 protein-coding OR51G1 olfactory receptor, family 51, subfamily G, member 1 O olfactory receptor 51G1|olfactory receptor 51G3|olfactory receptor OR11-29 20121230 -9606 79331 OR2AF1P - OR2AF2P HGNC:14719 X Xq26.2 olfactory receptor, family 2, subfamily AF, member 1 pseudogene pseudo OR2AF1P olfactory receptor, family 2, subfamily AF, member 1 pseudogene O - 20121230 -9606 79334 OR11H2 - C14orf15|OR11H2P|OR11H8P HGNC:14716 14 14q11.2 olfactory receptor, family 11, subfamily H, member 2 protein-coding OR11H2 olfactory receptor, family 11, subfamily H, member 2 O olfactory receptor 11H2|olfactory receptor OR14-1|olfactory receptor, family 11, subfamily H, member 2 pseudogene|olfactory receptor, family 11, subfamily H, member 8 pseudogene|seven transmembrane helix receptor 20121230 -9606 79336 OR5AH1P - - HGNC:14714 19 19q13.43 olfactory receptor, family 5, subfamily AH, member 1 pseudogene pseudo OR5AH1P olfactory receptor, family 5, subfamily AH, member 1 pseudogene O - 20121230 -9606 79339 OR51B4 - HOR5'Beta1 HGNC:14708|Ensembl:ENSG00000183251|HPRD:17735|Vega:OTTHUMG00000066665 11 11p15 olfactory receptor, family 51, subfamily B, member 4 protein-coding OR51B4 olfactory receptor, family 51, subfamily B, member 4 O odorant receptor HOR5'beta1|olfactory receptor 51B4 20121230 -9606 79342 OR51B3P - - HGNC:14706 11 11p15.4 olfactory receptor, family 51, subfamily B, member 3 pseudogene pseudo OR51B3P olfactory receptor, family 51, subfamily B, member 3 pseudogene O - 20121230 -9606 79345 OR51B2 - HOR5'Beta3|OR51B1P HGNC:14703|Ensembl:ENSG00000184881|HPRD:17734|Vega:OTTHUMG00000066682 11 11p15 olfactory receptor, family 51, subfamily B, member 2 protein-coding OR51B2 olfactory receptor, family 51, subfamily B, member 2 O odorant receptor HOR5'beta3|olfactory receptor 51B1|olfactory receptor 51B2 20121230 -9606 79346 OR4C5 - OR4C5P|OR4C5Q HGNC:14702 11 11p11.2 olfactory receptor, family 4, subfamily C, member 5 pseudo OR4C5 olfactory receptor, family 4, subfamily C, member 5 O - 20121230 -9606 79363 RSG1 RP4-733M16.4 C1orf89 HGNC:28127|Ensembl:ENSG00000132881|HPRD:14399|Vega:OTTHUMG00000002214 1 1p36.13 REM2 and RAB-like small GTPase 1 protein-coding RSG1 REM2 and RAB-like small GTPase 1 O REM2- and Rab-like small GTPase 1|Rem/Rab-Similar GTPase 1|miro domain-containing protein C1orf89 20121230 -9606 79364 ZXDC UNQ2790 ZXDL HGNC:28160|Ensembl:ENSG00000070476|HPRD:14420|Vega:OTTHUMG00000162754 3 3q21.3 ZXD family zinc finger C protein-coding ZXDC ZXD family zinc finger C O SERH2790|ZXD-like zinc finger protein|zinc finger protein ZXDC 20121230 -9606 79365 BHLHE41 - BHLHB3|DEC2|SHARP1|hDEC2 HGNC:16617|MIM:606200|Ensembl:ENSG00000123095|HPRD:16204|Vega:OTTHUMG00000169174 12 12p12.1 basic helix-loop-helix family, member e41 protein-coding BHLHE41 basic helix-loop-helix family, member e41 O basic helix-loop-helix domain containing, class B, 3|class E basic helix-loop-helix protein 41|differentially expressed in chondrocytes 2|differentially expressed in chondrocytes protein 2|enhancer-of-split and hairy-related protein 1 20121230 -9606 79366 HMGN5 RP11-196G4.1 NBP-45|NSBP1 HGNC:8013|MIM:300385|Ensembl:ENSG00000198157|HPRD:02310|Vega:OTTHUMG00000021911 X Xq13.3 high mobility group nucleosome binding domain 5 protein-coding HMGN5 high mobility group nucleosome binding domain 5 O high mobility group nucleosome-binding domain-containing protein 5|high-mobility group nucleosome binding domain 5|nucleosomal binding protein 1|nucleosome-binding protein 1 20121230 -9606 79368 FCRL2 RP11-367J7.6 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C HGNC:14875|MIM:606509|Ensembl:ENSG00000132704|HPRD:07351|Vega:OTTHUMG00000019399 1 1q21 Fc receptor-like 2 protein-coding FCRL2 Fc receptor-like 2 O Fc receptor-like protein 2|IFGP family protein 4|SH2 domain containing phosphatase anchor protein 1|SH2 domain-containing phosphatase anchor protein 1|fc receptor homolog 2|fcR-like protein 2|immune receptor translocation-associated protein 4|immunoglobulin receptor translocation-associated protein 4|immunoglobulin superfamily Fc receptor, gp42 20121230 -9606 79369 B3GNT4 UNQ1898/PRO4344 B3GN-T4|beta3Gn-T4 HGNC:15683|MIM:605864|Ensembl:ENSG00000176383|HPRD:12058|Vega:OTTHUMG00000168917 12 12q24 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 protein-coding B3GNT4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 O BGnT-4|beta-1,3-Gn-T4|beta-1,3-N-acetylglucosaminyltransferase 4|beta-1,3-N-acetylglucosaminyltransferase bGn-T4 20121230 -9606 79370 BCL2L14 - BCLG HGNC:16657|MIM:606126|Ensembl:ENSG00000121380|HPRD:05841|Vega:OTTHUMG00000159528 12 12p13-p12 BCL2-like 14 (apoptosis facilitator) protein-coding BCL2L14 BCL2-like 14 (apoptosis facilitator) O apoptosis facilitator Bcl-2-like protein 14|apoptosis regulator BCL-G|bcl2-L-14 20121230 -9606 79400 NOX5 - - HGNC:14874|MIM:606572|Ensembl:ENSG00000255346|HPRD:07359|Vega:OTTHUMG00000133320 15 15q23 NADPH oxidase, EF-hand calcium binding domain 5 protein-coding NOX5 NADPH oxidase, EF-hand calcium binding domain 5 O NADPH oxidase 5 20121230 -9606 79411 GLB1L UNQ229/PRO262 - HGNC:28129|Ensembl:ENSG00000163521|HPRD:11004|Vega:OTTHUMG00000133133 2 2q35 galactosidase, beta 1-like protein-coding GLB1L galactosidase, beta 1-like O beta-galactosidase-1-like protein 20121230 -9606 79412 KREMEN2 - KRM2 HGNC:18797|MIM:609899|Ensembl:ENSG00000131650|HPRD:13933|Vega:OTTHUMG00000128976 16 16p13.3 kringle containing transmembrane protein 2 protein-coding KREMEN2 kringle containing transmembrane protein 2 O dickkopf receptor 2|kremen protein 2|kringle domain-containing transmembrane protein 2|kringle-containing protein marking the eye and the nose 20121230 -9606 79413 ZBED2 - - HGNC:20710|Ensembl:ENSG00000177494|HPRD:15686|Vega:OTTHUMG00000074061 3 3q13.2 zinc finger, BED-type containing 2 protein-coding ZBED2 zinc finger, BED-type containing 2 O zinc finger BED domain-containing protein 2|zinc finger, BED domain containing 2 20121230 -9606 79414 LRFN3 UNQ5865/PRO34192 FIGLER1|SALM4 HGNC:28370|MIM:612809|Ensembl:ENSG00000126243|HPRD:14309|Vega:OTTHUMG00000181740 19 19q13.12 leucine rich repeat and fibronectin type III domain containing 3 protein-coding LRFN3 leucine rich repeat and fibronectin type III domain containing 3 O fibronectin type III, immunoglobulin and leucine rich repeat domains 1|leucine-rich repeat and fibronectin type-III domain-containing protein 3|synaptic adhesion-like molecule 4 20121230 -9606 79415 C17orf62 - - HGNC:28672|Ensembl:ENSG00000178927|HPRD:14630|Vega:OTTHUMG00000178770 17 17q25.3 chromosome 17 open reading frame 62 protein-coding C17orf62 chromosome 17 open reading frame 62 O uncharacterized protein C17orf62 20121230 -9606 79424 CYP3AP2 - CYP3A5P2 - 7 7q21.3-q22.1 cytochrome P450, family 3, subfamily A, polypeptide 5 pseudogene 2 pseudo - - - - 20121230 -9606 79441 HAUS3 - C4orf15|IT1|dgt3 HGNC:28719|MIM:613430|Ensembl:ENSG00000214367|HPRD:10784|Vega:OTTHUMG00000159805 4 4p16.3 HAUS augmin-like complex, subunit 3 protein-coding HAUS3 HAUS augmin-like complex, subunit 3 O HAUS augmin-like complex subunit 3 20121230 -9606 79442 LRRC2 - - HGNC:14676|MIM:607180|Ensembl:ENSG00000163827|HPRD:06213|Vega:OTTHUMG00000133479 3 3p21.31 leucine rich repeat containing 2 protein-coding LRRC2 leucine rich repeat containing 2 O leucine-rich repeat-containing protein 2 20121230 -9606 79443 FYCO1 - CATC2|RUFY3|ZFYVE7 HGNC:14673|MIM:607182|Ensembl:ENSG00000163820|HPRD:06215|Vega:OTTHUMG00000133447 3 3p21.31 FYVE and coiled-coil domain containing 1 protein-coding FYCO1 FYVE and coiled-coil domain containing 1 O FYVE and coiled-coil domain-containing protein 1|RUN and FYVE domain containing 3|zinc finger FYVE domain-containing protein 7 20121230 -9606 79444 BIRC7 RP11-261N11.7 KIAP|LIVIN|ML-IAP|MLIAP|RNF50 HGNC:13702|MIM:605737|Ensembl:ENSG00000101197|HPRD:05761|Vega:OTTHUMG00000032957 20 20q13.3 baculoviral IAP repeat containing 7 protein-coding BIRC7 baculoviral IAP repeat containing 7 O RING finger protein 50|baculoviral IAP repeat-containing protein 7|kidney inhibitor of apoptosis protein|livin inhibitor of apoptosis|melanoma inhibitor of apoptosis protein 20121230 -9606 79446 WDR25 - C14orf67 HGNC:21064|Ensembl:ENSG00000176473|HPRD:14649|Vega:OTTHUMG00000171585 14 14q32.2 WD repeat domain 25 protein-coding WDR25 WD repeat domain 25 O WD repeat-containing protein 25 20121230 -9606 79447 PAGR1 - C16orf53|GAS|PA1 HGNC:28707|MIM:612033|Ensembl:ENSG00000185928|HPRD:14647|Vega:OTTHUMG00000177143 16 16p11.2 PAXIP1 associated glutamate-rich protein 1 protein-coding PAGR1 PAXIP1 associated glutamate-rich protein 1 O PAXIP1-associated protein 1|PTIP-associated 1 protein|PTIP-associated protein 1|glutamate-rich coactivator associated with SRC1|glutamate-rich coactivator interacting with SRC1/NCOA1 20121230 -9606 79465 ULBP3 RP11-472G23.5 RAET1N HGNC:14895|MIM:605699|Ensembl:ENSG00000131019|HPRD:16144|Vega:OTTHUMG00000015811 6 6q25 UL16 binding protein 3 protein-coding ULBP3 UL16 binding protein 3 O ALCAN-gamma|N2DL-3|NKG2D ligand 3|NKG2DL3|UL16-binding protein 3|retinoic acid early transcript 1N 20121230 -9606 79469 DLEU2L - BCMSUNL HGNC:13225 1 1p31-p22 deleted in lymphocytic leukemia 2-like pseudo DLEU2L deleted in lymphocytic leukemia 2-like O - 20121230 -9606 79470 OR51J1 - OR51J1P|OR51J2 HGNC:14856 11 11p15.4 olfactory receptor, family 51, subfamily J, member 1 (gene/pseudogene) pseudo OR51J1 olfactory receptor, family 51, subfamily J, member 1 (gene/pseudogene) O - 20121230 -9606 79473 OR52N1 - OR11-61 HGNC:14853|Ensembl:ENSG00000181001|HPRD:15021|Vega:OTTHUMG00000168800 11 11p15.4 olfactory receptor, family 52, subfamily N, member 1 protein-coding OR52N1 olfactory receptor, family 52, subfamily N, member 1 O olfactory receptor 52N1|olfactory receptor OR11-61 20121230 -9606 79476 OR5AL2P - - HGNC:14850 11 11q12.1 olfactory receptor, family 5, subfamily AL, member 2 pseudogene pseudo OR5AL2P olfactory receptor, family 5, subfamily AL, member 2 pseudogene O - 20121230 -9606 79482 OR5AL1 - OR5AL1P HGNC:14844 11 11q12.1 olfactory receptor, family 5, subfamily AL, member 1 (gene/pseudogene) pseudo OR5AL1 olfactory receptor, family 5, subfamily AL, member 1 (gene/pseudogene) O - 20121230 -9606 79483 OR5BD1P - - HGNC:14843 11 11q12.1 olfactory receptor, family 5, subfamily BD, member 1 pseudogene pseudo OR5BD1P olfactory receptor, family 5, subfamily BD, member 1 pseudogene O - 20121230 -9606 79488 OR10D5P - - HGNC:14838 11 11q24.2 olfactory receptor, family 10, subfamily D, member 5 pseudogene pseudo OR10D5P olfactory receptor, family 10, subfamily D, member 5 pseudogene O - 20121230 -9606 79490 OR10G6 - OR10G6P|OR10G6Q HGNC:14836 11 11q24.1 olfactory receptor, family 10, subfamily G, member 6 pseudo OR10G6 olfactory receptor, family 10, subfamily G, member 6 O - 20121230 -9606 79491 OR5BM1P - - HGNC:14835 3 3q11.2 olfactory receptor, family 5, subfamily BM, member 1 pseudogene pseudo OR5BM1P olfactory receptor, family 5, subfamily BM, member 1 pseudogene O - 20121230 -9606 79492 OR7E97P - - HGNC:14834 3 3q21.2 olfactory receptor, family 7, subfamily E, member 97 pseudogene pseudo OR7E97P olfactory receptor, family 7, subfamily E, member 97 pseudogene O - 20121230 -9606 79494 OR8K2P - - HGNC:14832 11 11q12.1 olfactory receptor, family 8, subfamily K, member 2 pseudogene pseudo OR8K2P olfactory receptor, family 8, subfamily K, member 2 pseudogene O - 20121230 -9606 79498 OR8I1P - - HGNC:14828 11 11q12.1 olfactory receptor, family 8, subfamily I, member 1 pseudogene pseudo OR8I1P olfactory receptor, family 8, subfamily I, member 1 pseudogene O - 20121230 -9606 79499 OR7L1P - - HGNC:14827 X Xq26.2 olfactory receptor, family 7, subfamily L, member 1 pseudogene pseudo OR7L1P olfactory receptor, family 7, subfamily L, member 1 pseudogene O - 20121230 -9606 79501 OR4F5 - - HGNC:14825|HPRD:14974 1 1p36.33 olfactory receptor, family 4, subfamily F, member 5 protein-coding OR4F5 olfactory receptor, family 4, subfamily F, member 5 O olfactory receptor 4F5 20121230 -9606 79504 OR4G4P - - HGNC:14822 1 1p36.33 olfactory receptor, family 4, subfamily G, member 4 pseudogene pseudo OR4G4P olfactory receptor, family 4, subfamily G, member 4 pseudogene O - 20121230 -9606 79508 OR5M7P - - HGNC:14818 11 11q12.1 olfactory receptor, family 5, subfamily M, member 7 pseudogene pseudo OR5M7P olfactory receptor, family 5, subfamily M, member 7 pseudogene O - 20121230 -9606 79512 OR5M6P - - HGNC:14814 11 11q12.1 olfactory receptor, family 5, subfamily M, member 6 pseudogene pseudo OR5M6P olfactory receptor, family 5, subfamily M, member 6 pseudogene O - 20121230 -9606 79513 OR10R1P - OR1-10 HGNC:14813 1 1q23.1 olfactory receptor, family 10, subfamily R, member 1 pseudogene pseudo OR10R1P olfactory receptor, family 10, subfamily R, member 1 pseudogene O - 20121230 -9606 79514 OR10T1P - - HGNC:14812 1 1q23.1 olfactory receptor, family 10, subfamily T, member 1 pseudogene pseudo OR10T1P olfactory receptor, family 10, subfamily T, member 1 pseudogene O - 20121230 -9606 79515 OR10G5P - - HGNC:14811 11 11q24.1 olfactory receptor, family 10, subfamily G, member 5 pseudogene pseudo OR10G5P olfactory receptor, family 10, subfamily G, member 5 pseudogene O - 20121230 -9606 79518 OR5M4P - - HGNC:14808 11 11q12.1 olfactory receptor, family 5, subfamily M, member 4 pseudogene pseudo OR5M4P olfactory receptor, family 5, subfamily M, member 4 pseudogene O - 20121230 -9606 79521 OR52S1P - - HGNC:14805 11 11p15.4 olfactory receptor, family 52, subfamily S, member 1 pseudogene pseudo OR52S1P olfactory receptor, family 52, subfamily S, member 1 pseudogene O - 20121230 -9606 79523 OR5M2P - OR11-193 HGNC:14803 11 11q12.1 olfactory receptor, family 5, subfamily M, member 2 pseudogene pseudo OR5M2P olfactory receptor, family 5, subfamily M, member 2 pseudogene O - 20121230 -9606 79525 OR51A5P - - HGNC:14801 11 11p15.4 olfactory receptor, family 51, subfamily A, member 5 pseudogene pseudo OR51A5P olfactory receptor, family 51, subfamily A, member 5 pseudogene O - 20121230 -9606 79526 OR4C10P - - HGNC:14800 11 11p11.2 olfactory receptor, family 4, subfamily C, member 10 pseudogene pseudo OR4C10P olfactory receptor, family 4, subfamily C, member 10 pseudogene O - 20121230 -9606 79528 OR4R1P - - HGNC:14798 11 11p11.2 olfactory receptor, family 4, subfamily R, member 1 pseudogene pseudo OR4R1P olfactory receptor, family 4, subfamily R, member 1 pseudogene O - 20121230 -9606 79529 OR52J2P - OR52J4P HGNC:14797 11 11p15.4 olfactory receptor, family 52, subfamily J, member 2 pseudogene pseudo OR52J2P olfactory receptor, family 52, subfamily J, member 2 pseudogene O - 20121230 -9606 79530 OR4C9P - - HGNC:14796 11 11p11.2 olfactory receptor, family 4, subfamily C, member 9 pseudogene pseudo OR4C9P olfactory receptor, family 4, subfamily C, member 9 pseudogene O - 20121230 -9606 79532 OR51A3P - - HGNC:14794 11 11p15.4 olfactory receptor, family 51, subfamily A, member 3 pseudogene pseudo OR51A3P olfactory receptor, family 51, subfamily A, member 3 pseudogene O - 20121230 -9606 79533 OR52E3P - - HGNC:14793 11 11p15.4 olfactory receptor, family 52, subfamily E, member 3 pseudogene pseudo OR52E3P olfactory receptor, family 52, subfamily E, member 3 pseudogene O - 20121230 -9606 79534 OR4V1P - - HGNC:14736 11 11q11 olfactory receptor, family 4, subfamily V, member 1 pseudogene pseudo OR4V1P olfactory receptor, family 4, subfamily V, member 1 pseudogene O - 20121230 -9606 79537 OR7E90P - OR7E123P|OST705 HGNC:14733 2 2q24.1 olfactory receptor, family 7, subfamily E, member 90 pseudogene pseudo OR7E90P olfactory receptor, family 7, subfamily E, member 90 pseudogene O - 20121230 -9606 79538 OR13I1P - OR13I2P HGNC:14732 9 9q31.1 olfactory receptor, family 13, subfamily I, member 1 pseudogene pseudo OR13I1P olfactory receptor, family 13, subfamily I, member 1 pseudogene O - 20121230 -9606 79540 OR7E89P - - HGNC:14730 2 2q24.1 olfactory receptor, family 7, subfamily E, member 89 pseudogene pseudo OR7E89P olfactory receptor, family 7, subfamily E, member 89 pseudogene O - 20121230 -9606 79541 OR2A4 - OR2A10 HGNC:14729|Ensembl:ENSG00000180658|HPRD:17692|Vega:OTTHUMG00000016316 6 6q23 olfactory receptor, family 2, subfamily A, member 4 protein-coding OR2A4 olfactory receptor, family 2, subfamily A, member 4 O olfactory receptor 2A10|olfactory receptor 2A4|olfactory receptor OR6-37|olfactory receptor, family 2, subfamily A, member 10 20121230 -9606 79544 OR4K1 - OR14-19 HGNC:14726|Ensembl:ENSG00000155249|HPRD:14975|Vega:OTTHUMG00000170633 14 14q11.2 olfactory receptor, family 4, subfamily K, member 1 protein-coding OR4K1 olfactory receptor, family 4, subfamily K, member 1 O olfactory receptor 4K1|olfactory receptor OR14-19 20121230 -9606 79546 OR6M2P - - HGNC:14713 11 11q24.1 olfactory receptor, family 6, subfamily M, member 2 pseudogene pseudo OR6M2P olfactory receptor, family 6, subfamily M, member 2 pseudogene O - 20121230 -9606 79547 OR2AL1P - - HGNC:14712 11 11q22.3 olfactory receptor, family 2, subfamily AL, member 1 pseudogene pseudo OR2AL1P olfactory receptor, family 2, subfamily AL, member 1 pseudogene O - 20121230 -9606 79549 OR6J1 - OR6J1P|OR6J2 HGNC:14707 14 14q11.2 olfactory receptor, family 6, subfamily J, member 1 (gene/pseudogene) pseudo OR6J1 olfactory receptor, family 6, subfamily J, member 1 (gene/pseudogene) O - 20121230 -9606 79550 OR4C4P - OR4C17|OR4C17P|OR4C47P HGNC:14700 11 11q12.1 olfactory receptor, family 4, subfamily C, member 4 pseudogene pseudo OR4C4P olfactory receptor, family 4, subfamily C, member 4 pseudogene O - 20121230 -9606 79567 FAM65A - - HGNC:25836|Ensembl:ENSG00000039523|HPRD:08586|Vega:OTTHUMG00000137536 16 16q22.1 family with sequence similarity 65, member A protein-coding FAM65A family with sequence similarity 65, member A O protein FAM65A 20121230 -9606 79568 C2orf47 - - HGNC:26198|Ensembl:ENSG00000162972|HPRD:07994|Vega:OTTHUMG00000132771 2 2q33.1 chromosome 2 open reading frame 47 protein-coding C2orf47 chromosome 2 open reading frame 47 O uncharacterized protein C2orf47, mitochondrial 20121230 -9606 79570 NKAIN1 - FAM77C HGNC:25743|MIM:612871|Ensembl:ENSG00000084628|HPRD:07786|Vega:OTTHUMG00000003788 1 1p35.2 Na+/K+ transporting ATPase interacting 1 protein-coding NKAIN1 Na+/K+ transporting ATPase interacting 1 O Na(+)/K(+)-transporting ATPase subunit beta-1-interacting protein 1|family with sequence similarity 77, member C|sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1 20121230 -9606 79571 GCC1 - GCC1P|GCC88 HGNC:19095|MIM:607418|Ensembl:ENSG00000179562|HPRD:07599|Vega:OTTHUMG00000023590 7 7q32.1 GRIP and coiled-coil domain containing 1 protein-coding GCC1 GRIP and coiled-coil domain containing 1 O GRIP and coiled-coil domain-containing protein 1|golgi coiled-coil 1|golgi coiled-coil protein 1|peripheral membrane Golgi protein 20121230 -9606 79572 ATP13A3 - AFURS1 HGNC:24113|MIM:610232|Ensembl:ENSG00000133657|HPRD:10636|Vega:OTTHUMG00000156034 3 3q29 ATPase type 13A3 protein-coding ATP13A3 ATPase type 13A3 O ATPase family homolog up-regulated in senescence cells 1|probable cation-transporting ATPase 13A3 20121230 -9606 79573 TTC13 PSEC0076 - HGNC:26204|Ensembl:ENSG00000143643|HPRD:15578|Vega:OTTHUMG00000037788 1 1q42.2 tetratricopeptide repeat domain 13 protein-coding TTC13 tetratricopeptide repeat domain 13 O TPR repeat protein 13|tetratricopeptide repeat protein 13 20121230 -9606 79574 EPS8L3 - EPS8R3 HGNC:21297|MIM:614989|Ensembl:ENSG00000198758|HPRD:13277|Vega:OTTHUMG00000011651 1 1p13.3 EPS8-like 3 protein-coding EPS8L3 EPS8-like 3 O EPS8-like protein 3|EPS8-related protein 3|epidermal growth factor receptor kinase substrate 8-like protein 3|epidermal growth factor receptor pathway substrate 8-related protein 3 20121230 -9606 79575 ABHD8 - - HGNC:23759|Ensembl:ENSG00000127220|HPRD:12409 19 19p13.11 abhydrolase domain containing 8 protein-coding ABHD8 abhydrolase domain containing 8 O abhydrolase domain-containing protein 8 20121230 -9606 79576 NKAP - - HGNC:29873|MIM:300766|Ensembl:ENSG00000101882|HPRD:06666|Vega:OTTHUMG00000022284 X Xq24 NFKB activating protein protein-coding NKAP NFKB activating protein O NF-kappa-B-activating protein|NF-kappaB activating protein 20121230 -9606 79577 CDC73 - C1orf28|HPTJT|HRPT2|HYX HGNC:16783|MIM:607393|Ensembl:ENSG00000134371|HPRD:09581|Vega:OTTHUMG00000035676 1 1q25 cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein-coding CDC73 cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) O cell division cycle protein 73 homolog|hyperparathyroidism 2 protein|parafibromin 20121230 -9606 79581 SLC52A2 - BVVLS2|D15Ertd747e|GPCR41|GPR172A|PAR1|RFT3|RFVT2|hRFT3 HGNC:30224|MIM:607882|Ensembl:ENSG00000185803|HPRD:07431|Vega:OTTHUMG00000165168 8 8q24.3 solute carrier family 52, riboflavin transporter, member 2 protein-coding SLC52A2 solute carrier family 52, riboflavin transporter, member 2 O G protein-coupled receptor 172A|PERV-A receptor 1|porcine endogenous retrovirus A receptor 1|putative G-protein coupled receptor GPCR41|riboflavin transporter 3 20121230 -9606 79582 SPAG16 - PF20|WDR29 HGNC:23225|MIM:612173|Ensembl:ENSG00000144451|HPRD:18089|Vega:OTTHUMG00000133015 2 2q34 sperm associated antigen 16 protein-coding SPAG16 sperm associated antigen 16 O WD repeat domain 29|pf20 protein homolog|sperm-associated WD repeat protein|sperm-associated antigen 16 protein 20121230 -9606 79583 TMEM231 UNQ870/PRO1886 ALYE870|JBTS20|PRO1886 HGNC:37234|MIM:614949|Ensembl:ENSG00000205084|Vega:OTTHUMG00000177132 16 16q23.1 transmembrane protein 231 protein-coding TMEM231 transmembrane protein 231 O - 20121230 -9606 79585 CORO7 - 0610011B16Rik|CRN7|POD1 HGNC:26161|MIM:611668|Ensembl:ENSG00000262246|HPRD:07975|Vega:OTTHUMG00000129465 16 16p13.3 coronin 7 protein-coding CORO7 coronin 7 O 70 kDa WD repeat tumor rejection antigen homolog|coronin-7 20121230 -9606 79586 CHPF UNQ651/PRO1281 CHSY2|CSS2 HGNC:24291|MIM:610405|Ensembl:ENSG00000123989|HPRD:10829|Vega:OTTHUMG00000058929 2 2q35 chondroitin polymerizing factor protein-coding CHPF chondroitin polymerizing factor O N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II|N-acetylgalactosaminyltransferase 2|chondroitin glucuronyltransferase 2|chondroitin sulfate synthase 2|chondroitin-polymerizing factor|glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase II 20121230 -9606 79587 CARS2 OK/SW-cl.10 - HGNC:25695|MIM:612800|Ensembl:ENSG00000134905|HPRD:07763|Vega:OTTHUMG00000017347 13 13q34 cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) O cysRS|cysteine tRNA ligase 2, mitochondrial (putative)|cysteine--tRNA ligase|probable cysteine--tRNA ligase, mitochondrial|probable cysteinyl-tRNA synthetase, mitochondrial 20121230 -9606 79589 RNF128 RP11-150F24.1 GRAIL HGNC:21153|MIM:300439|Ensembl:ENSG00000133135|HPRD:02340|Vega:OTTHUMG00000022151 X Xq22.3 ring finger protein 128, E3 ubiquitin protein ligase protein-coding RNF128 ring finger protein 128, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RNF128|gene related to anergy in lymphocytes protein 20121230 -9606 79590 MRPL24 - L24mt|MRP-L18|MRP-L24 HGNC:14037|MIM:611836|Ensembl:ENSG00000143314|HPRD:14749|Vega:OTTHUMG00000041296 1 1q23.1 mitochondrial ribosomal protein L24 protein-coding MRPL24 mitochondrial ribosomal protein L24 O 39S ribosomal protein L24, mitochondrial 20121230 -9606 79591 C10orf76 RP11-190J1.9 - HGNC:25788|Ensembl:ENSG00000120029|HPRD:12588|Vega:OTTHUMG00000018943 10 10q24.32 chromosome 10 open reading frame 76 protein-coding C10orf76 chromosome 10 open reading frame 76 O UPF0668 protein C10orf76 20121230 -9606 79594 MUL1 - C1orf166|GIDE|MAPL|MULAN|RNF218|RP11-401M16.2 HGNC:25762|MIM:612037|Ensembl:ENSG00000090432|HPRD:07799|Vega:OTTHUMG00000002838 1 1p36.12 mitochondrial E3 ubiquitin protein ligase 1 protein-coding MUL1 mitochondrial E3 ubiquitin protein ligase 1 O E3 SUMO-protein ligase MUL1|E3 ubiquitin ligase|E3 ubiquitin-protein ligase MUL1|growth inhibition and death E3 ligase|mitochondria-anchored protein ligase|mitochondrial E3 ubiquitin ligase 1|mitochondrial ubiquitin ligase activator of NF-kB|mitochondrial ubiquitin ligase activator of NFKB 1|mitochondrial-anchored protein ligase|putative NF-kappa-B-activating protein 266|ring finger protein 218 20121230 -9606 79595 SAP130 - - HGNC:29813|MIM:609697|Ensembl:ENSG00000136715|HPRD:18015|Vega:OTTHUMG00000131571 2 2q14.3 Sin3A-associated protein, 130kDa protein-coding SAP130 Sin3A-associated protein, 130kDa O 130 kDa Sin3-associated polypeptide|Sin3-associated polypeptide p130|histone deacetylase complex subunit SAP130|mSin3A-associated protein 130 20121230 -9606 79596 RNF219 - C13orf7 HGNC:20308|Ensembl:ENSG00000152193|HPRD:12619|Vega:OTTHUMG00000017122 13 13q31.1 ring finger protein 219 protein-coding RNF219 ring finger protein 219 O RING finger protein 219 20121230 -9606 79598 CEP97 - 2810403B08Rik|LRRIQ2 HGNC:26244|Ensembl:ENSG00000182504|HPRD:08014|Vega:OTTHUMG00000159162 3 3q12.3 centrosomal protein 97kDa protein-coding CEP97 centrosomal protein 97kDa O centrosomal protein of 97 kDa|leucine-rich repeat and IQ domain-containing protein 2|leucine-rich repeats and IQ motif containing 2 20121230 -9606 79600 TCTN1 UNQ9369/PRO34160 JBTS13|TECT1 HGNC:26113|MIM:609863|Ensembl:ENSG00000204852|HPRD:08636|Vega:OTTHUMG00000150051 12 12q24.11 tectonic family member 1 protein-coding TCTN1 tectonic family member 1 O tectonic-1 20121230 -9606 79602 ADIPOR2 - ACDCR2|PAQR2 HGNC:24041|MIM:607946|Ensembl:ENSG00000006831|HPRD:06403|Vega:OTTHUMG00000130139 12 12p13.31 adiponectin receptor 2 protein-coding ADIPOR2 adiponectin receptor 2 O adiponectin receptor protein 2|progestin and adipoQ receptor family member II 20121230 -9606 79603 CERS4 - LASS4|Trh1 HGNC:23747|Ensembl:ENSG00000090661|HPRD:13962|Vega:OTTHUMG00000172570 19 19p13.2 ceramide synthase 4 protein-coding CERS4 ceramide synthase 4 O LAG1 homolog, ceramide synthase 4|LAG1 longevity assurance homolog 4 20121230 -9606 79605 PGBD5 - - HGNC:19405|Ensembl:ENSG00000177614|HPRD:10148|Vega:OTTHUMG00000037759 1 1q42.13 piggyBac transposable element derived 5 protein-coding PGBD5 piggyBac transposable element derived 5 O piggyBac transposable element-derived protein 5 20121230 -9606 79607 FAM118B - - HGNC:26110|Ensembl:ENSG00000197798|HPRD:07952|Vega:OTTHUMG00000165817 11 11q24.2 family with sequence similarity 118, member B protein-coding FAM118B family with sequence similarity 118, member B O protein FAM118B 20121230 -9606 79608 RIC3 UNQ720/PRO1385 AYST720|PRO1385 HGNC:30338|MIM:610509|Ensembl:ENSG00000166405|HPRD:17974|Vega:OTTHUMG00000165694 11 11p15.4 resistance to inhibitors of cholinesterase 3 homolog (C. elegans) protein-coding RIC3 resistance to inhibitors of cholinesterase 3 homolog (C. elegans) O protein RIC-3 20121230 -9606 79609 METTL21D - C14orf138 HGNC:20352|Ensembl:ENSG00000100483|HPRD:16605|Vega:OTTHUMG00000029531 14 14q21.3 methyltransferase like 21D protein-coding METTL21D methyltransferase like 21D O methyltransferase-like protein 21D 20121230 -9606 79611 ACSS3 - - HGNC:24723|MIM:614356|Ensembl:ENSG00000111058|HPRD:13385|Vega:OTTHUMG00000170179 12 12q21.31 acyl-CoA synthetase short-chain family member 3 protein-coding ACSS3 acyl-CoA synthetase short-chain family member 3 O AMP-binding enzyme, 33217|acyl-CoA synthetase short-chain family member 3, mitochondrial 20121230 -9606 79612 NAA16 RP11-396A22.1 NARG1L HGNC:26164|Ensembl:ENSG00000172766|HPRD:07977|Vega:OTTHUMG00000016791 13 13q14.11 N(alpha)-acetyltransferase 16, NatA auxiliary subunit protein-coding NAA16 N(alpha)-acetyltransferase 16, NatA auxiliary subunit O N-alpha-acetyltransferase 16, NatA auxiliary subunit|NARG1-like protein|NMDA receptor-regulated 1-like protein 20121230 -9606 79613 TANGO6 - TMCO7 HGNC:25749|Ensembl:ENSG00000103047|Vega:OTTHUMG00000176743 16 16q22.1 transport and golgi organization 6 homolog (Drosophila) protein-coding TANGO6 transport and golgi organization 6 homolog (Drosophila) O transmembrane and coiled-coil domain-containing protein 7|transmembrane and coiled-coil domains 7 20121230 -9606 79616 CCNJL - - HGNC:25876|Ensembl:ENSG00000135083|HPRD:07853|Vega:OTTHUMG00000130325 5 5q33.3 cyclin J-like protein-coding CCNJL cyclin J-like O cyclin-J-like protein 20121230 -9606 79618 HMBOX1 - HNF1LA|PBHNF HGNC:26137|Ensembl:ENSG00000147421|HPRD:07964|Vega:OTTHUMG00000172138 8 8p21.1 homeobox containing 1 protein-coding HMBOX1 homeobox containing 1 O homeobox-containing protein 1|homeobox-containing protein PBHNF 20121230 -9606 79621 RNASEH2B - AGS2|DLEU8 HGNC:25671|MIM:610326|Ensembl:ENSG00000136104|Vega:OTTHUMG00000016937 13 13q14.3 ribonuclease H2, subunit B protein-coding RNASEH2B ribonuclease H2, subunit B O Aicardi-Goutieres syndrome 2 protein|RNase H2 subunit B|deleted in lymphocytic leukemia 8|ribonuclease H2 subunit B|ribonuclease HI subunit B 20121230 -9606 79622 SNRNP25 Z69719.2-001 C16orf33 HGNC:14161|HPRD:12673 16 16p13.3 small nuclear ribonucleoprotein 25kDa (U11/U12) protein-coding SNRNP25 small nuclear ribonucleoprotein 25kDa (U11/U12) O U11/U12 small nuclear ribonucleoprotein 25 kDa protein|U11/U12 snRNP 25 kDa protein|U11/U12 snRNP 25K|minus-99 protein 20121230 -9606 79623 GALNT14 UNQ2434/PRO4994 GALNT15|GalNac-T10|GalNac-T14 HGNC:22946|MIM:608225|Ensembl:ENSG00000158089|HPRD:12194|Vega:OTTHUMG00000074077 2 2p23.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) protein-coding GALNT14 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) O UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 14|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase T10|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase T14|polypeptide GalNAc transferase 14|polypeptide N-acetylgalactosaminyltransferase 14|polypeptide N-acetylgalactosaminyltransferase 15|pp-GaNTase 14|protein-UDP acetylgalactosaminyltransferase 14 20121230 -9606 79624 C6orf211 - - HGNC:17872|Ensembl:ENSG00000146476|HPRD:09854|Vega:OTTHUMG00000015838 6 6q25.1 chromosome 6 open reading frame 211 protein-coding C6orf211 chromosome 6 open reading frame 211 O UPF0364 protein C6orf211 20121230 -9606 79625 NDNF UNQ2748/PRO6487 C4orf31 HGNC:26256|Ensembl:ENSG00000173376|HPRD:08019|Vega:OTTHUMG00000132973 4 4q27 neuron-derived neurotrophic factor protein-coding NDNF neuron-derived neurotrophic factor O fibronectin type-III domain-containing protein C4orf31|protein NDNF 20121230 -9606 79626 TNFAIP8L2 RP11-68I18.4 TIPE2 HGNC:26277|MIM:612112|Ensembl:ENSG00000163154|HPRD:08029|Vega:OTTHUMG00000012259 1 1q21.3 tumor necrosis factor, alpha-induced protein 8-like 2 protein-coding TNFAIP8L2 tumor necrosis factor, alpha-induced protein 8-like 2 O TNF alpha-induced protein 8-like protein 2|TNFAIP8-like protein 2|inflammation factor 20|inflammation factor protein 20|tumor necrosis factor alpha-induced protein 8-like protein 2|tumor necrosis factor, alpha-induced protein 8-like protein 2 20121230 -9606 79627 OGFRL1 - dJ331H24.1 HGNC:21378|Ensembl:ENSG00000119900|HPRD:14875|Vega:OTTHUMG00000015000 6 6q13 opioid growth factor receptor-like 1 protein-coding OGFRL1 opioid growth factor receptor-like 1 O opioid growth factor receptor-like protein 1 20121230 -9606 79628 SH3TC2 PP12494 CMT4C|MNMN HGNC:29427|MIM:608206|Ensembl:ENSG00000169247|HPRD:10496|Vega:OTTHUMG00000129930 5 5q32 SH3 domain and tetratricopeptide repeats 2 protein-coding SH3TC2 SH3 domain and tetratricopeptide repeats 2 O SH3 domain and tetratricopeptide repeat-containing protein 2|SH3 domain and tetratricopeptide repeats-containing protein 2 20121230 -9606 79629 OCEL1 - FWP009|S863-9 HGNC:26221|Ensembl:ENSG00000099330|HPRD:08004 19 19p13.11 occludin/ELL domain containing 1 protein-coding OCEL1 occludin/ELL domain containing 1 O occludin/ELL domain-containing protein 1 20121230 -9606 79630 C1orf54 RP4-790G17.4 - HGNC:26258|Ensembl:ENSG00000118292|HPRD:08020|Vega:OTTHUMG00000012546 1 1q21.2 chromosome 1 open reading frame 54 protein-coding C1orf54 chromosome 1 open reading frame 54 O uncharacterized protein C1orf54 20121230 -9606 79631 EFTUD1 - FAM42A|HsT19294|RIA1 HGNC:25789|Ensembl:ENSG00000140598|HPRD:07812|Vega:OTTHUMG00000172573 15 15q25.2 elongation factor Tu GTP binding domain containing 1 protein-coding EFTUD1 elongation factor Tu GTP binding domain containing 1 O elongation factor Tu GTP-binding domain-containing protein 1|elongation factor-like 1|ribosome assembly 1 homolog 20121230 -9606 79632 FAM184A RP3-329L24.3 C6orf60 HGNC:20991|Ensembl:ENSG00000111879|HPRD:09856|Vega:OTTHUMG00000015471 6 6q22.31 family with sequence similarity 184, member A protein-coding FAM184A family with sequence similarity 184, member A O protein FAM184A 20121230 -9606 79633 FAT4 Nbla00548 CDHF14|CDHR11|FAT-J|FATJ|NBLA00548 HGNC:23109|MIM:612411|Ensembl:ENSG00000196159|HPRD:07637|Vega:OTTHUMG00000133100 4 4q28.1 FAT tumor suppressor homolog 4 (Drosophila) protein-coding FAT4 FAT tumor suppressor homolog 4 (Drosophila) O cadherin family member 14|cadherin-related family member 11|fat-like cadherin FATJ|fat-like cadherin protein FAT-J|hFat4|protocadherin Fat 4|putative protein product of Nbla00548 20121230 -9606 79634 SCRN3 - SES3 HGNC:30382|MIM:614967|Ensembl:ENSG00000144306|HPRD:18028|Vega:OTTHUMG00000132332 2 2q31.1 secernin 3 protein-coding SCRN3 secernin 3 O secernin-3 20121230 -9606 79635 CCDC121 hCG_1988995 - HGNC:25833|Ensembl:ENSG00000176714|HPRD:07834|Vega:OTTHUMG00000128427 2 2p23.3 coiled-coil domain containing 121 protein-coding CCDC121 coiled-coil domain containing 121 O coiled-coil domain-containing protein 121 20121230 -9606 79637 ARMC7 - - HGNC:26168|Ensembl:ENSG00000125449|HPRD:08649|Vega:OTTHUMG00000179345 17 17q25.1 armadillo repeat containing 7 protein-coding ARMC7 armadillo repeat containing 7 O armadillo repeat-containing protein 7 20121230 -9606 79639 TMEM53 RP4-678E16.2 NET4 HGNC:26186|Ensembl:ENSG00000126106|HPRD:07989|Vega:OTTHUMG00000007833 1 1p34.1 transmembrane protein 53 protein-coding TMEM53 transmembrane protein 53 O novel DUF829 domain-containing protein 20121230 -9606 79640 C22orf46 CTA-216E10.6 - HGNC:26294|Ensembl:ENSG00000184208|HPRD:08037|Vega:OTTHUMG00000151188 22 22q13.2 chromosome 22 open reading frame 46 protein-coding C22orf46 chromosome 22 open reading frame 46 O CTA-216E10.6|putative uncharacterized protein C22orf46|uncharacterized protein C22orf46 20121230 -9606 79641 ROGDI - KTZS HGNC:29478|MIM:614574|Ensembl:ENSG00000067836|HPRD:13388|Vega:OTTHUMG00000129479 16 16p13.3 rogdi homolog (Drosophila) protein-coding ROGDI rogdi homolog (Drosophila) O leucine zipper domain protein|protein rogdi homolog 20121230 -9606 79642 ARSJ UNQ372/PRO708 - HGNC:26286|MIM:610010|Ensembl:ENSG00000180801|HPRD:08034|Vega:OTTHUMG00000161067 4 4q26 arylsulfatase family, member J protein-coding ARSJ arylsulfatase family, member J O ASJ|arylsulfatase J 20121230 -9606 79643 CHMP6 - VPS20 HGNC:25675|MIM:610901|Ensembl:ENSG00000176108|HPRD:08564|Vega:OTTHUMG00000177645 17 17q25.3 charged multivesicular body protein 6 protein-coding CHMP6 charged multivesicular body protein 6 O chromatin modifying protein 6|chromatin-modifying protein 6|hVps20|vacuolar protein sorting-associated protein 20 20121230 -9606 79644 SRD5A3 - CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 HGNC:25812|MIM:611715|Ensembl:ENSG00000128039|HPRD:07825|Vega:OTTHUMG00000128733 4 4q12 steroid 5 alpha-reductase 3 protein-coding SRD5A3 steroid 5 alpha-reductase 3 O 3-oxo-5-alpha-steroid 4-dehydrogenase 3|S5AR 3|SR type 3|probable polyprenol reductase 20121230 -9606 79645 EFCAB1 - - HGNC:25678|Ensembl:ENSG00000034239|HPRD:08565|Vega:OTTHUMG00000164203 8 8q11.21 EF-hand calcium binding domain 1 protein-coding EFCAB1 EF-hand calcium binding domain 1 O EF-hand calcium-binding domain-containing protein 1 20121230 -9606 79646 PANK3 - - HGNC:19365|MIM:606161|Ensembl:ENSG00000120137|HPRD:07312|Vega:OTTHUMG00000130410 5 5q34 pantothenate kinase 3 protein-coding PANK3 pantothenate kinase 3 O hPanK3|pantothenic acid kinase 3 20121230 -9606 79647 AKIRIN1 - C1orf108|RP11-781D11.2|STRF2 HGNC:25744|Ensembl:ENSG00000174574|HPRD:07787|Vega:OTTHUMG00000007496 1 1p34.3 akirin 1 protein-coding AKIRIN1 akirin 1 O akirin-1 20121230 -9606 79648 MCPH1 - BRIT1|MCT HGNC:6954|MIM:607117|Ensembl:ENSG00000147316|HPRD:06174|Vega:OTTHUMG00000163618 8 8p23.1 microcephalin 1 protein-coding MCPH1 microcephalin 1 O BRCT-repeat inhibitor of TERT expression 1|microcephalin 20121230 -9606 79649 MAP7D3 RP11-535K18.3 - HGNC:25742|Ensembl:ENSG00000129680|Vega:OTTHUMG00000022507 X Xq26.3 MAP7 domain containing 3 protein-coding MAP7D3 MAP7 domain containing 3 O MAP7 domain-containing protein 3 20121230 -9606 79650 USB1 - C16orf57|HVSL1|Mpn1|PN|hUsb1 HGNC:25792|MIM:613276|Ensembl:ENSG00000103005|HPRD:07815|Vega:OTTHUMG00000133456 16 16q21 U6 snRNA biogenesis 1 protein-coding USB1 U6 snRNA biogenesis 1 O HVSL motif containing 1|U six biogenesis 1|UPF0406 protein C16orf57|mutated in poikiloderma with neutropenia protein 1|putative U6 snRNA phosphodiesterase 20121230 -9606 79651 RHBDF2 - RHBDL5|RHBDL6|TOC HGNC:20788|MIM:614404|Ensembl:ENSG00000129667|HPRD:07987|Vega:OTTHUMG00000180180 17 17q25.1 rhomboid 5 homolog 2 (Drosophila) protein-coding RHBDF2 rhomboid 5 homolog 2 (Drosophila) O iRhom2|inactive rhomboid protein 2|rhomboid family member 2|rhomboid veinlet-like protein 5|rhomboid veinlet-like protein 6 20121230 -9606 79652 TMEM204 UNQ6509/PRO21434 C16orf30|CLP24 HGNC:14158|MIM:611002|Ensembl:ENSG00000131634|Vega:OTTHUMG00000176585 16 16p13.3 transmembrane protein 204 protein-coding TMEM204 transmembrane protein 204 O claudin-like protein 24 20121230 -9606 79654 HECTD3 - RP11-69J16.1 HGNC:26117|Ensembl:ENSG00000126107|HPRD:13383|Vega:OTTHUMG00000008587 1 1p34.1 HECT domain containing E3 ubiquitin protein ligase 3 protein-coding HECTD3 HECT domain containing E3 ubiquitin protein ligase 3 O E3 ubiquitin-protein ligase HECTD3 20121230 -9606 79656 BEND5 - C1orf165 HGNC:25668|Ensembl:ENSG00000162373|Vega:OTTHUMG00000008153 1 1p33 BEN domain containing 5 protein-coding BEND5 BEN domain containing 5 O BEN domain-containing protein 5 20121230 -9606 79657 RPAP3 - - HGNC:26151|MIM:611477|Ensembl:ENSG00000005175|HPRD:07970|Vega:OTTHUMG00000169668 12 12q13.11 RNA polymerase II associated protein 3 protein-coding RPAP3 RNA polymerase II associated protein 3 O RNA polymerase II-associated protein 3 20121230 -9606 79658 ARHGAP10 - GRAF2|PS-GAP|PSGAP HGNC:26099|MIM:609746|Ensembl:ENSG00000071205|HPRD:07949|Vega:OTTHUMG00000161460 4 4q31.23 Rho GTPase activating protein 10 protein-coding ARHGAP10 Rho GTPase activating protein 10 O GTPase regulator associated with focal adhesion kinase 2|graf-related protein 2|rho GTPase-activating protein 10|rho-type GTPase-activating protein 10 20121230 -9606 79659 DYNC2H1 - ATD3|DHC1b|DHC2|DNCH2|DYH1B|hdhc11 HGNC:2962|MIM:603297|Ensembl:ENSG00000187240|Vega:OTTHUMG00000165941 11 11q21-q22.1 dynein, cytoplasmic 2, heavy chain 1 protein-coding DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 O cytoplasmic dynein 2 heavy chain 1|dynein cytoplasmic heavy chain 2|dynein heavy chain 11|dynein heavy chain isotype 1B|dynein heavy chain, isotype 1B|dynein, cytoplasmic, heavy polypeptide 2 20121230 -9606 79660 PPP1R3B - GL|PPP1R4|PTG HGNC:14942|MIM:610541|Ensembl:ENSG00000173281|HPRD:17894|Vega:OTTHUMG00000129329 8 8p23.1 protein phosphatase 1, regulatory subunit 3B protein-coding PPP1R3B protein phosphatase 1, regulatory subunit 3B O PP1 subunit R4|hepatic glycogen-targeting protein phosphatase 1 regulatory subunit GL|hepatic glycogen-targeting subunit, G(L)|protein phosphatase 1 regulatory subunit 3B|protein phosphatase 1 regulatory subunit 4|protein phosphatase 1, regulatory (inhibitor) subunit 3B 20121230 -9606 79661 NEIL1 - FPG1|NEI1|hFPG1 HGNC:18448|MIM:608844|Ensembl:ENSG00000140398|HPRD:12314|Vega:OTTHUMG00000142821 15 15q24.2 nei endonuclease VIII-like 1 (E. coli) protein-coding NEIL1 nei endonuclease VIII-like 1 (E. coli) O DNA glycosylase/AP lyase Neil1|DNA-(apurinic or apyrimidinic site) lyase Neil1|NEH1|endonuclease 8-like 1|endonuclease VIII|endonuclease VIII-like 1|nei homolog 1|nei-like protein 1 20121230 -9606 79663 HSPBAP1 - PASS1 HGNC:16389|MIM:608263|Ensembl:ENSG00000169087|HPRD:12197|Vega:OTTHUMG00000159550 3 3q21.1 HSPB (heat shock 27kDa) associated protein 1 protein-coding HSPBAP1 HSPB (heat shock 27kDa) associated protein 1 O 27 kDa heat shock protein-associated protein 1|HSPB1-associated protein 1|protein associating with small stress protein PASS1 20121230 -9606 79664 NARG2 UNQ3101/PRO10100 BRCC1 HGNC:29885|MIM:610835|Ensembl:ENSG00000128915|HPRD:17628|Vega:OTTHUMG00000132764 15 15q22.2 NMDA receptor regulated 2 protein-coding NARG2 NMDA receptor regulated 2 O NMDA receptor-regulated gene 2|NMDA receptor-regulated protein 2|breast cancer cell 1 20121230 -9606 79665 DHX40 ARG147 DDX40|PAD HGNC:18018|MIM:607570|Ensembl:ENSG00000108406|HPRD:06346|Vega:OTTHUMG00000179401 17 17q23.1 DEAH (Asp-Glu-Ala-His) box polypeptide 40 protein-coding DHX40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 O DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 40 (RNA helicase)|DEAH box protein 40|probable ATP-dependent RNA helicase DHX40 20121230 -9606 79666 PLEKHF2 - PHAFIN2|ZFYVE18 HGNC:20757|Ensembl:ENSG00000175895|HPRD:15147|Vega:OTTHUMG00000164660 8 8q22.1 pleckstrin homology domain containing, family F (with FYVE domain) member 2 protein-coding PLEKHF2 pleckstrin homology domain containing, family F (with FYVE domain) member 2 O PH and FYVE domain-containing protein 2|PH domain-containing family F member 2|pleckstrin homology domain-containing family F member 2|zinc finger FYVE domain-containing protein 18 20121230 -9606 79667 FLJ13197 - - HPRD:07818 4 4p14 uncharacterized FLJ13197 miscRNA - - - - 20121230 -9606 79668 PARP8 - ARTD16|pART16 HGNC:26124|Ensembl:ENSG00000151883|HPRD:07960|Vega:OTTHUMG00000096969 5 5q11.1 poly (ADP-ribose) polymerase family, member 8 protein-coding PARP8 poly (ADP-ribose) polymerase family, member 8 O ADP-ribosyltransferase diphtheria toxin-like 16|poly [ADP-ribose] polymerase 8 20121230 -9606 79669 C3orf52 - TTMP HGNC:26255|MIM:611956|Ensembl:ENSG00000114529|HPRD:08018|Vega:OTTHUMG00000159230 3 3q13.2 chromosome 3 open reading frame 52 protein-coding C3orf52 chromosome 3 open reading frame 52 O TPA induced trans-membrane protein|TPA-induced transmembrane protein|novel endoplasmic reticulum transmembrane protein 20121230 -9606 79670 ZCCHC6 RP11-507D14.3 PAPD6 HGNC:25817|Ensembl:ENSG00000083223|HPRD:11697|Vega:OTTHUMG00000020137 9 9q21 zinc finger, CCHC domain containing 6 protein-coding ZCCHC6 zinc finger, CCHC domain containing 6 O PAP associated domain containing 6|TUTase 7|terminal uridylyltransferase 7|zinc finger CCHC domain-containing protein 6 20121230 -9606 79671 NLRX1 - CLR11.3|DLNB26|NOD26|NOD5|NOD9 HGNC:29890|MIM:611947|Ensembl:ENSG00000160703|HPRD:17640|Vega:OTTHUMG00000154476 11 11q23.3 NLR family member X1 protein-coding NLRX1 NLR family member X1 O NLR family, X1|NOD-like receptor X1|caterpiller protein 11.3|nucleotide-binding oligomerization domain protein 26|nucleotide-binding oligomerization domain protein 5|nucleotide-binding oligomerization domain protein 9|nucleotide-binding oligomerization domain, leucine rich repeat containing X1 20121230 -9606 79672 FN3KRP - FN3KL HGNC:25700|MIM:611683|Ensembl:ENSG00000141560|HPRD:13546|Vega:OTTHUMG00000177846 17 17q25.3 fructosamine 3 kinase related protein protein-coding FN3KRP fructosamine 3 kinase related protein O FN3K-RP|FN3K-related protein|fructosamine-3-kinase-related protein|ketosamine-3-kinase 20121230 -9606 79673 ZNF329 - - HGNC:14209|Ensembl:ENSG00000181894|HPRD:07779 19 19q13.43 zinc finger protein 329 protein-coding ZNF329 zinc finger protein 329 O - 20121230 -9606 79674 VEPH1 - MELT|VEPH HGNC:25735|MIM:609594|Ensembl:ENSG00000197415|HPRD:07782|Vega:OTTHUMG00000158711 3 3q24-q25 ventricular zone expressed PH domain-containing 1 protein-coding VEPH1 ventricular zone expressed PH domain-containing 1 O protein melted|ventricular zone expressed PH domain homolog 1|ventricular zone-expressed PH domain-containing protein homolog 1 20121230 -9606 79675 FASTKD1 - - HGNC:26150|Ensembl:ENSG00000138399|HPRD:07969|Vega:OTTHUMG00000154953 2 2q31 FAST kinase domains 1 protein-coding FASTKD1 FAST kinase domains 1 O FAST kinase domain-containing protein 1 20121230 -9606 79676 OGFOD2 - - HGNC:25823|Ensembl:ENSG00000111325|HPRD:07829|Vega:OTTHUMG00000168778 12 12q24.31 2-oxoglutarate and iron-dependent oxygenase domain containing 2 protein-coding OGFOD2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 O 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 20121230 -9606 79677 SMC6 - SMC-6|SMC6L1|hSMC6 HGNC:20466|MIM:609387|Ensembl:ENSG00000163029|HPRD:10242|Vega:OTTHUMG00000090675 2 2p24.2 structural maintenance of chromosomes 6 protein-coding SMC6 structural maintenance of chromosomes 6 O SMC protein 6|SMC6 structural maintenance of chromosomes 6-like 1|structural maintenance of chromosomes protein 6 20121230 -9606 79679 VTCN1 RP11-229A19.4 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 HGNC:28873|MIM:608162|Ensembl:ENSG00000134258|HPRD:06429|Vega:OTTHUMG00000012118 1 1p13.1 V-set domain containing T cell activation inhibitor 1 protein-coding VTCN1 V-set domain containing T cell activation inhibitor 1 O B7 family member, H4|B7 superfamily member 1|T cell costimulatory molecule B7x|T-cell costimulatory molecule B7x|V-set domain-containing T-cell activation inhibitor 1|immune costimulatory protein B7-H4 20121230 -9606 79680 C22orf29 - - HGNC:26112|Ensembl:ENSG00000215012|HPRD:13382|Vega:OTTHUMG00000030314 22 22q11.21 chromosome 22 open reading frame 29 protein-coding C22orf29 chromosome 22 open reading frame 29 O uncharacterized protein C22orf29 20121230 -9606 79682 MLF1IP - CENP50|CENPU|CENPU50|KLIP1|PBIP1 HGNC:21348|MIM:611511|Ensembl:ENSG00000151725|HPRD:14722|Vega:OTTHUMG00000160499 4 4q35.1 MLF1 interacting protein protein-coding MLF1IP MLF1 interacting protein O KSHV latent nuclear antigen interacting protein 1|KSHV latent nuclear antigen-interacting protein 1|MLF1-interacting protein|centromere protein U|centromere protein of 50 kDa|interphase centromere complex protein 24|polo-box-interacting protein 1 20121230 -9606 79683 ZDHHC14 RP3-481C9.1 NEW1CP HGNC:20341|Ensembl:ENSG00000175048|HPRD:15711|Vega:OTTHUMG00000015896 6 6q25.3 zinc finger, DHHC-type containing 14 protein-coding ZDHHC14 zinc finger, DHHC-type containing 14 O DHHC-14|NEW1 domain containing protein|NEW1 domain-containing protein|probable palmitoyltransferase ZDHHC14|zinc finger DHHC domain-containing protein 14|zinc finger, DHHC domain containing 14 20121230 -9606 79684 MSANTD2 - C11orf61 HGNC:26266|Ensembl:ENSG00000120458|HPRD:08024|Vega:OTTHUMG00000165931 11 11q24.2 Myb/SANT-like DNA-binding domain containing 2 protein-coding MSANTD2 Myb/SANT-like DNA-binding domain containing 2 O myb/SANT-like DNA-binding domain-containing protein 2 20121230 -9606 79685 SAP30L - NS4ATP2 HGNC:25663|MIM:610398|Ensembl:ENSG00000164576|HPRD:08563|Vega:OTTHUMG00000130146 5 5q33.2 SAP30-like protein-coding SAP30L SAP30-like O HCV non-structural protein 4A-transactivated protein 2|Sin3A associated protein p30-like|histone deacetylase complex subunit SAP30L|sin3 corepressor complex subunit SAP30L|sin3-associated protein p30-like 20121230 -9606 79686 LINC00341 - C14orf139|NCRNA00341 HGNC:20353|HPRD:16606 14 14q32.13 long intergenic non-protein coding RNA 341 miscRNA LINC00341 long intergenic non-protein coding RNA 341 O - 20121230 -9606 79689 STEAP4 - STAMP2|TIARP|TNFAIP9 HGNC:21923|MIM:611098|Ensembl:ENSG00000127954|HPRD:11637|Vega:OTTHUMG00000153853 7 7q21.12 STEAP family member 4 protein-coding STEAP4 STEAP family member 4 O metalloreductase STEAP4|six transmembrane prostate protein 2|six-transmembrane epithelial antigen of prostate 4|sixTransMembrane protein of prostate 2|tumor necrosis factor, alpha-induced protein 9|tumor necrosis-alpha-induced adipose-related protein 20121230 -9606 79690 GAL3ST4 PP6968 GAL3ST-4 HGNC:24145|MIM:608235|Ensembl:ENSG00000197093|HPRD:12195|Vega:OTTHUMG00000154885 7 7q22.1 galactose-3-O-sulfotransferase 4 protein-coding GAL3ST4 galactose-3-O-sulfotransferase 4 O beta-galactose-3-O-sulfotransferase 4|beta-galactose-3-O-sulfotransferase, 4|gal-beta-1,3-GalNAc 3'-sulfotransferase|galbeta1-3GalNAc 3'-sulfotransferase 20121230 -9606 79691 QTRTD1 - - HGNC:25771|Ensembl:ENSG00000151576|HPRD:17944|Vega:OTTHUMG00000159336 3 3q13.31 queuine tRNA-ribosyltransferase domain containing 1 protein-coding QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 O queuine tRNA-ribosyltransferase domain-containing protein 1|queuine tRNA-ribosyltransferase subunit QTRTD1 20121230 -9606 79692 ZNF322 RP11-457M11.3 HCG12|ZNF322A|ZNF388|ZNF489 HGNC:23640|MIM:610847|Ensembl:ENSG00000181315|HPRD:15770|Vega:OTTHUMG00000014460 6 6p22.1 zinc finger protein 322 protein-coding ZNF322 zinc finger protein 322 O HLA complex group 12|zinc finger protein 322A|zinc finger protein 388|zinc finger protein 489 20121230 -9606 79693 YRDC - DRIP3|IRIP|RP11-109P14.4|SUA5 HGNC:28905|MIM:612276|Ensembl:ENSG00000196449|HPRD:18313|Vega:OTTHUMG00000004318 1 1p34.3 yrdC domain containing (E. coli) protein-coding YRDC yrdC domain containing (E. coli) O dopamine receptor interacting protein 3|dopamine receptor-interacting protein 3|hIRIP|ischemia/reperfusion inducible protein|ischemia/reperfusion-inducible protein homolog|yrdC domain-containing protein, mitochondrial 20121230 -9606 79694 MANEA - ENDO|hEndo HGNC:21072|MIM:612327|Ensembl:ENSG00000172469|HPRD:14357|Vega:OTTHUMG00000016296 6 6q16.1 mannosidase, endo-alpha protein-coding MANEA mannosidase, endo-alpha O alpha 1,2-endomannosidase|endo-alpha mannosidase|endomannosidase|glycoprotein endo-alpha-1,2-mannosidase|mandaselin 20121230 -9606 79695 GALNT12 - CRCS1|GalNAc-T12 HGNC:19877|MIM:610290|Ensembl:ENSG00000119514|HPRD:13561|Vega:OTTHUMG00000020348 9 9q22.33 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) protein-coding GALNT12 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) O UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 12|colorectal cancer, susceptibility to 1|polypeptide GalNAc transferase 12|polypeptide N-acetylgalactosaminyltransferase 12|pp-GaNTase 12|protein-UDP acetylgalactosaminyltransferase 12 20121230 -9606 79696 ZC2HC1C - C14orf140|FAM164C HGNC:20354|Ensembl:ENSG00000119703|HPRD:16607|Vega:OTTHUMG00000167439 14 14q24.3 zinc finger, C2HC-type containing 1C protein-coding ZC2HC1C zinc finger, C2HC-type containing 1C O family with sequence similarity 164, member C|protein FAM164C|zinc finger C2HC domain-containing protein 1C 20121230 -9606 79697 C14orf169 - MAPJD|NO66 HGNC:20968|MIM:611919|HPRD:12641 14 14q24.3 chromosome 14 open reading frame 169 protein-coding C14orf169 chromosome 14 open reading frame 169 O MYC-associated protein with JmjC domain|hsNO66|lysine-specific demethylase NO66|nucleolar protein 66 20121230 -9606 79698 ZMAT4 - - HGNC:25844|Ensembl:ENSG00000165061|HPRD:07837|Vega:OTTHUMG00000164049 8 8p11.21 zinc finger, matrin-type 4 protein-coding ZMAT4 zinc finger, matrin-type 4 O zinc finger matrin-type protein 4|zinc finger, matrin type 4 20121230 -9606 79699 ZYG11B - ZYG11 HGNC:25820|Ensembl:ENSG00000162378|HPRD:13356|Vega:OTTHUMG00000008938 1 1p32.3 zyg-11 family member B, cell cycle regulator protein-coding ZYG11B zyg-11 family member B, cell cycle regulator O protein zyg-11 homolog B|zyg-11 homolog B 20121230 -9606 79701 OGFOD3 - C17orf101 HGNC:26174|Ensembl:ENSG00000181396|HPRD:13386|Vega:OTTHUMG00000178679 17 17q25.3 2-oxoglutarate and iron-dependent oxygenase domain containing 3 protein-coding OGFOD3 2-oxoglutarate and iron-dependent oxygenase domain containing 3 O PKHD domain-containing transmembrane protein C17orf101 20121230 -9606 79703 C11orf80 - - HGNC:26197|Ensembl:ENSG00000173715|HPRD:07993|Vega:OTTHUMG00000167164 11 11q13.2 chromosome 11 open reading frame 80 protein-coding C11orf80 chromosome 11 open reading frame 80 O putative uncharacterized protein C11orf80 20121230 -9606 79705 LRRK1 - RIPK6|Roco1 HGNC:18608|MIM:610986|Ensembl:ENSG00000154237|HPRD:14319|Vega:OTTHUMG00000165514 15 15q26.3 leucine-rich repeat kinase 1 protein-coding LRRK1 leucine-rich repeat kinase 1 O leucine-rich repeat serine/threonine-protein kinase 1 20121230 -9606 79706 PRKRIP1 - C114|KRBOX3 HGNC:21894|Ensembl:ENSG00000128563|HPRD:11460|Vega:OTTHUMG00000157717 7 7q22.1 PRKR interacting protein 1 (IL11 inducible) protein-coding PRKRIP1 PRKR interacting protein 1 (IL11 inducible) O KRAB box domain containing 3|PRKR-interacting protein 1|likely ortholog of mouse C114 dsRNA-binding protein 20121230 -9606 79707 NOL9 - Grc3|NET6 HGNC:26265|Ensembl:ENSG00000162408|HPRD:08667|Vega:OTTHUMG00000000904 1 1p36.31 nucleolar protein 9 protein-coding NOL9 nucleolar protein 9 O polynucleotide 5'-hydroxyl-kinase NOL9|polynucleotide 5'-kinase 20121230 -9606 79709 GLT25D1 PSEC0241 - HGNC:26182|Ensembl:ENSG00000130309|HPRD:07986 19 19p13.11 glycosyltransferase 25 domain containing 1 protein-coding GLT25D1 glycosyltransferase 25 domain containing 1 O glycosyltransferase 25 family member 1|hydroxylysine galactosyltransferase 1|procollagen galactosyltransferase 1 20121230 -9606 79710 MORC4 RP1-75H8.4 ZCW4|ZCWCC2|dJ75H8.2 HGNC:23485|Ensembl:ENSG00000133131|HPRD:06757|Vega:OTTHUMG00000022155 X Xq22.3 MORC family CW-type zinc finger 4 protein-coding MORC4 MORC family CW-type zinc finger 4 O MORC family CW-type zinc finger protein 4|zinc finger CW-type coiled-coil domain protein 2|zinc finger, CW type with coiled-coil domain 2 20121230 -9606 79711 IPO4 - Imp4 HGNC:19426|Ensembl:ENSG00000196497|HPRD:07022|Vega:OTTHUMG00000028801 14 14q12 importin 4 protein-coding IPO4 importin 4 O imp4b|importin-4|importin-4b|ran-binding protein 4|ranBP4 20121230 -9606 79712 GTDC1 - Hmat-Xa|mat-Xa HGNC:20887|MIM:610165|Ensembl:ENSG00000121964|HPRD:13615|Vega:OTTHUMG00000131835 2 2q22.3 glycosyltransferase-like domain containing 1 protein-coding GTDC1 glycosyltransferase-like domain containing 1 O glycosyltransferase-like 1|glycosyltransferase-like domain-containing protein 1|mannosyltransferase candidate 20121230 -9606 79713 IGFLR1 - TMEM149|U2AF1L4 HGNC:23620|MIM:614143|Ensembl:ENSG00000126246|HPRD:07996|Vega:OTTHUMG00000182064 19 19q13.12 IGF-like family receptor 1 protein-coding IGFLR1 IGF-like family receptor 1 O U2 small nuclear RNA auxiliary factor 1-like 4|U2(RNU2) small nuclear RNA auxiliary factor 1-like 4|transmembrane protein 149 20121230 -9606 79714 CCDC51 - - HGNC:25714|Ensembl:ENSG00000164051|HPRD:08571|Vega:OTTHUMG00000133534 3 3p21.31 coiled-coil domain containing 51 protein-coding CCDC51 coiled-coil domain containing 51 O coiled-coil domain-containing protein 51 20121230 -9606 79716 NPEPL1 RP11-261P9.1 bA261P9.2 HGNC:16244|Ensembl:ENSG00000215440|HPRD:07496|Vega:OTTHUMG00000033060 20 20q13.32 aminopeptidase-like 1 protein-coding NPEPL1 aminopeptidase-like 1 O probable aminopeptidase NPEPL1 20121230 -9606 79717 PPCS RP11-163G10.1 - HGNC:25686|MIM:609853|Ensembl:ENSG00000127125|HPRD:07760|Vega:OTTHUMG00000007332 1 1p34.2 phosphopantothenoylcysteine synthetase protein-coding PPCS phosphopantothenoylcysteine synthetase O PPC synthetase|phosphopantothenate--cysteine ligase 20121230 -9606 79718 TBL1XR1 - C21|DC42|IRA1|TBLR1 HGNC:29529|MIM:608628|Ensembl:ENSG00000177565|HPRD:15476|Vega:OTTHUMG00000157140 3 3q26.32 transducin (beta)-like 1 X-linked receptor 1 protein-coding TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 O F-box-like/WD repeat-containing protein TBL1XR1|TBL1-related protein 1|nuclear receptor co-repressor/HDAC3 complex subunit|nuclear receptor corepressor/HDAC3 complex subunit TBLR1|transducin beta-like 1X-related protein 1 20121230 -9606 79719 AAGAB - KPPP1|PPKP1|PPKP1A|p34 HGNC:25662|MIM:614888|Ensembl:ENSG00000103591|HPRD:07754|Vega:OTTHUMG00000172246 15 15q22.33-q23 alpha- and gamma-adaptin binding protein protein-coding AAGAB alpha- and gamma-adaptin binding protein O alpha- and gamma-adaptin-binding protein p34 20121230 -9606 79720 VPS37B - - HGNC:25754|MIM:610037|Ensembl:ENSG00000139722|HPRD:07794|Vega:OTTHUMG00000168767 12 12q24.31 vacuolar protein sorting 37 homolog B (S. cerevisiae) protein-coding VPS37B vacuolar protein sorting 37 homolog B (S. cerevisiae) O ESCRT-I complex subunit VPS37B|hVps37B|vacuolar protein sorting 37B|vacuolar protein sorting-associated protein 37B 20121230 -9606 79722 ANKRD55 - - HGNC:25681|Ensembl:ENSG00000164512|HPRD:07758|Vega:OTTHUMG00000162305 5 5q11.2 ankyrin repeat domain 55 protein-coding ANKRD55 ankyrin repeat domain 55 O ankyrin repeat domain-containing protein 55 20121230 -9606 79723 SUV39H2 RP11-2K17.2 KMT1B HGNC:17287|MIM:606503|Ensembl:ENSG00000152455|HPRD:07580|Vega:OTTHUMG00000017718 10 10p13 suppressor of variegation 3-9 homolog 2 (Drosophila) protein-coding SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila) O H3-K9-HMTase 2|histone H3-K9 methyltransferase 2|histone-lysine N-methyltransferase SUV39H2|lysine N-methyltransferase 1B|su(var)3-9 homolog 2 20121230 -9606 79724 ZNF768 - - HGNC:26273|Ensembl:ENSG00000169957|HPRD:08671|Vega:OTTHUMG00000132392 16 16p11.2 zinc finger protein 768 protein-coding ZNF768 zinc finger protein 768 O - 20121230 -9606 79725 THAP9 - - HGNC:23192|MIM:612537|Ensembl:ENSG00000168152|HPRD:15502|Vega:OTTHUMG00000130291 4 4q21.22 THAP domain containing 9 protein-coding THAP9 THAP domain containing 9 O THAP domain-containing protein 9 20121230 -9606 79726 WDR59 FP977 - HGNC:25706|Ensembl:ENSG00000103091|HPRD:13351|Vega:OTTHUMG00000170831 16 16q23.1 WD repeat domain 59 protein-coding WDR59 WD repeat domain 59 O WD repeat-containing protein 59 20121230 -9606 79727 LIN28A - CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A HGNC:15986|MIM:611043|Ensembl:ENSG00000131914|HPRD:17278|Vega:OTTHUMG00000003550 1 1p36.11 lin-28 homolog A (C. elegans) protein-coding LIN28A lin-28 homolog A (C. elegans) O RNA-binding protein LIN-28|protein lin-28 homolog A|zinc finger CCHC domain-containing protein 1|zinc finger, CCHC domain containing 1 20121230 -9606 79728 PALB2 - FANCN|PNCA3 HGNC:26144|MIM:610355|Ensembl:ENSG00000083093|HPRD:07966|Vega:OTTHUMG00000177097 16 16p12.2 partner and localizer of BRCA2 protein-coding PALB2 partner and localizer of BRCA2 O - 20121230 -9606 79729 SH3D21 RP11-268J15.3 C1orf113 HGNC:26236|Ensembl:ENSG00000214193|HPRD:08011|Vega:OTTHUMG00000007868 1 1p34.3 SH3 domain containing 21 protein-coding SH3D21 SH3 domain containing 21 O SH3 domain-containing protein 21|SH3 domain-containing protein C1orf113 20121230 -9606 79730 NSUN7 - - HGNC:25857|Ensembl:ENSG00000179299|HPRD:07846|Vega:OTTHUMG00000128597 4 4p14 NOP2/Sun domain family, member 7 protein-coding NSUN7 NOP2/Sun domain family, member 7 O NOL1/NOP2/Sun domain family member 7|NOL1/NOP2/Sun domain family, member 7|putative methyltransferase NSUN7 20121230 -9606 79731 NARS2 - SLM5|asnRS HGNC:26274|MIM:612803|Ensembl:ENSG00000137513|HPRD:08026|Vega:OTTHUMG00000166702 11 11q14.1 asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding NARS2 asparaginyl-tRNA synthetase 2, mitochondrial (putative) O asparagine tRNA ligase 2, mitochondrial (putative)|asparagine--tRNA ligase|probable asparagine--tRNA ligase, mitochondrial|probable asparaginyl-tRNA synthetase, mitochondrial 20121230 -9606 79733 E2F8 - E2F-8 HGNC:24727|MIM:612047|Ensembl:ENSG00000129173|HPRD:10981|Vega:OTTHUMG00000166102 11 11p15.1 E2F transcription factor 8 protein-coding E2F8 E2F transcription factor 8 O E2F family member 8|transcription factor E2F8 20121230 -9606 79734 KCTD17 RP5-1170K4.4 - HGNC:25705|Ensembl:ENSG00000100379|HPRD:07764|Vega:OTTHUMG00000150532 22 22q12.3 potassium channel tetramerisation domain containing 17 protein-coding KCTD17 potassium channel tetramerisation domain containing 17 O BTB/POZ domain-containing protein KCTD17 20121230 -9606 79735 TBC1D17 - - HGNC:25699|Ensembl:ENSG00000104946|HPRD:15471 19 19q13.33 TBC1 domain family, member 17 protein-coding TBC1D17 TBC1 domain family, member 17 O TBC1 domain family member 17 20121230 -9606 79736 TEFM - C17orf42 HGNC:26223|Ensembl:ENSG00000172171|HPRD:08005|Vega:OTTHUMG00000179029 17 - transcription elongation factor, mitochondrial protein-coding TEFM transcription elongation factor, mitochondrial O transcription elongation factor of mitochondria 20121230 -9606 79738 BBS10 - C12orf58 HGNC:26291|MIM:610148|Ensembl:ENSG00000179941|HPRD:08036|Vega:OTTHUMG00000147352 12 12q21.2 Bardet-Biedl syndrome 10 protein-coding BBS10 Bardet-Biedl syndrome 10 O Bardet-Biedl syndrome 10 protein 20121230 -9606 79739 TTLL7 - RP5-836J3.2 HGNC:26242|Ensembl:ENSG00000137941|HPRD:08013|Vega:OTTHUMG00000009932 1 1p31.1 tubulin tyrosine ligase-like family, member 7 protein-coding TTLL7 tubulin tyrosine ligase-like family, member 7 O testis development protein NYD-SP30|tubulin polyglutamylase TTLL7|tubulin--tyrosine ligase-like protein 7 20121230 -9606 79740 ZBBX - - HGNC:26245|Ensembl:ENSG00000169064|HPRD:08015|Vega:OTTHUMG00000133560 3 3q26.1 zinc finger, B-box domain containing protein-coding ZBBX zinc finger, B-box domain containing O zinc finger B-box domain-containing protein 1 20121230 -9606 79741 C10orf68 RP11-479G22.1 dJ1104A8.1 HGNC:25779|Ensembl:ENSG00000150076|HPRD:10698|Vega:OTTHUMG00000017926 10 10p11.22 chromosome 10 open reading frame 68 protein-coding C10orf68 chromosome 10 open reading frame 68 O uncharacterized protein C10orf68 20121230 -9606 79742 CXorf36 hCG_1981635 4930578C19Rik|DIA1R|EPQL1862|PRO3743|bA435K1.1 HGNC:25866|Ensembl:ENSG00000147113|HPRD:06524|Vega:OTTHUMG00000021403 X Xp11.3 chromosome X open reading frame 36 protein-coding CXorf36 chromosome X open reading frame 36 O UPF0672 protein CXorf36|deleted in autism-1 related protein|deleted in autism-related protein 1|hCG1981635 20121230 -9606 79744 ZNF419 - ZNF419A HGNC:20648|Ensembl:ENSG00000105136|HPRD:08665|Vega:OTTHUMG00000037073 19 19q13.43 zinc finger protein 419 protein-coding ZNF419 zinc finger protein 419 O zinc finger protein 419A 20121230 -9606 79745 CLIP4 - RSNL2 HGNC:26108|Ensembl:ENSG00000115295|HPRD:08634|Vega:OTTHUMG00000097837 2 2p23.2 CAP-GLY domain containing linker protein family, member 4 protein-coding CLIP4 CAP-GLY domain containing linker protein family, member 4 O CAP-Gly domain-containing linker protein 4|restin-like 2|restin-like protein 2 20121230 -9606 79746 ECHDC3 RP11-401F24.3 - HGNC:23489|Ensembl:ENSG00000134463|HPRD:10930|Vega:OTTHUMG00000017675 10 10p14 enoyl CoA hydratase domain containing 3 protein-coding ECHDC3 enoyl CoA hydratase domain containing 3 O enoyl Coenzyme A hydratase domain containing 3|enoyl-CoA hydratase domain-containing protein 3, mitochondrial 20121230 -9606 79747 ADGB RP11-497D6.1 C6orf103 HGNC:21212|MIM:614630|Ensembl:ENSG00000118492|Vega:OTTHUMG00000015758 6 6q24.3 androglobin protein-coding ADGB androglobin O calpain-7-like protein 20121230 -9606 79748 LMAN1L UNQ2784/PRO7174 ERGIC-53L|ERGL HGNC:6632|MIM:609548|Ensembl:ENSG00000140506|HPRD:17284|Vega:OTTHUMG00000142813 15 15q24.1 lectin, mannose-binding, 1 like protein-coding LMAN1L lectin, mannose-binding, 1 like O ERGIC-53-like protein|ERGIC53-like protein|LMAN1-like protein|lectin mannose-binding 1-like|protein ERGIC-53-like 20121230 -9606 79750 ZNF385D - ZNF659 HGNC:26191|Ensembl:ENSG00000151789|HPRD:07990|Vega:OTTHUMG00000130484 3 3p24.3 zinc finger protein 385D protein-coding ZNF385D zinc finger protein 385D O zinc finger protein 659 20121230 -9606 79751 SLC25A22 - EIEE3|GC1|NET44 HGNC:19954|MIM:609302|Ensembl:ENSG00000177542|HPRD:15356|Vega:OTTHUMG00000133310 11 11p15.5 solute carrier family 25 (mitochondrial carrier: glutamate), member 22 protein-coding SLC25A22 solute carrier family 25 (mitochondrial carrier: glutamate), member 22 O GC-1|glutamate/H(+) symporter 1|mitochondrial glutamate carrier 1 20121230 -9606 79752 ZFAND1 - - HGNC:25858|Ensembl:ENSG00000104231|HPRD:07847|Vega:OTTHUMG00000164684 8 8q21.13 zinc finger, AN1-type domain 1 protein-coding ZFAND1 zinc finger, AN1-type domain 1 O AN1-type zinc finger protein 1 20121230 -9606 79753 SNIP1 RP3-423B22.3 PMRED HGNC:30587|MIM:608241|Ensembl:ENSG00000163877|HPRD:06999|Vega:OTTHUMG00000004225 1 1p34.3 Smad nuclear interacting protein 1 protein-coding SNIP1 Smad nuclear interacting protein 1 O FHA domain-containing protein SNIP1|smad nuclear-interacting protein 1 20121230 -9606 79754 ASB13 - - HGNC:19765|Ensembl:ENSG00000196372|HPRD:10667|Vega:OTTHUMG00000017603 10 10p15.1 ankyrin repeat and SOCS box containing 13 protein-coding ASB13 ankyrin repeat and SOCS box containing 13 O ankyrin repeat and SOCS box protein 13|ankyrin repeat and SOCS box-containing 13|ankyrin repeat domain-containing SOCS box protein Asb-13 20121230 -9606 79755 ZNF750 - ZFP750 HGNC:25843|MIM:610226|Ensembl:ENSG00000141579|HPRD:08588|Vega:OTTHUMG00000177822 17 17q25.3 zinc finger protein 750 protein-coding ZNF750 zinc finger protein 750 O protein ZNF750 20121230 -9606 79758 DHRS12 - SDR40C1 HGNC:25832|Ensembl:ENSG00000102796|HPRD:07833|Vega:OTTHUMG00000016952 13 13q14.3 dehydrogenase/reductase (SDR family) member 12 protein-coding DHRS12 dehydrogenase/reductase (SDR family) member 12 O dehydrogenase/reductase SDR family member 12|short chain dehydrogenase/reductase family 40C, member 1 20121230 -9606 79759 ZNF668 - - HGNC:25821|Ensembl:ENSG00000167394|HPRD:07828|Vega:OTTHUMG00000047357 16 16p11.2 zinc finger protein 668 protein-coding ZNF668 zinc finger protein 668 O - 20121230 -9606 79760 GEMIN7 - SIP3 HGNC:20045|MIM:607419|Ensembl:ENSG00000142252|HPRD:07600|Vega:OTTHUMG00000181768 19 19q13.32 gem (nuclear organelle) associated protein 7 protein-coding GEMIN7 gem (nuclear organelle) associated protein 7 O gem-associated protein 7|gemin 7|gemin-7 20121230 -9606 79762 C1orf115 - RP11-322F10.4 HGNC:25873|Ensembl:ENSG00000162817|HPRD:08596|Vega:OTTHUMG00000037361 1 1q41 chromosome 1 open reading frame 115 protein-coding C1orf115 chromosome 1 open reading frame 115 O uncharacterized protein C1orf115 20121230 -9606 79763 ISOC2 - - HGNC:26278|MIM:612928|Ensembl:ENSG00000063241|HPRD:08030|Vega:OTTHUMG00000180830 19 19q13.42 isochorismatase domain containing 2 protein-coding ISOC2 isochorismatase domain containing 2 O isochorismatase domain-containing protein 2, mitochondrial 20121230 -9606 79767 ELMO3 - CED-12|CED12|ELMO-3 HGNC:17289|MIM:606422|Ensembl:ENSG00000102890|HPRD:12104|Vega:OTTHUMG00000133570 16 16q22.1 engulfment and cell motility 3 protein-coding ELMO3 engulfment and cell motility 3 O ced-12 homolog 3|engulfment and cell motility protein 3 20121230 -9606 79768 KATNBL1 - C15orf29 HGNC:26199|Ensembl:ENSG00000134152|HPRD:07995|Vega:OTTHUMG00000129368 15 15q14 katanin p80 subunit B-like 1 protein-coding KATNBL1 katanin p80 subunit B-like 1 O uncharacterized protein C15orf29 20121230 -9606 79770 TXNDC15 UNQ335/PRO534 C5orf14|UNQ335 HGNC:20652|Ensembl:ENSG00000113621|HPRD:08658|Vega:OTTHUMG00000129115 5 5q31.1 thioredoxin domain containing 15 protein-coding TXNDC15 thioredoxin domain containing 15 O 2310047H23Rik|disulfide isomerase|thioredoxin domain-containing protein 15 20121230 -9606 79772 MCTP1 - - HGNC:26183|Ensembl:ENSG00000175471|HPRD:08652|Vega:OTTHUMG00000162742 5 5q15 multiple C2 domains, transmembrane 1 protein-coding MCTP1 multiple C2 domains, transmembrane 1 O multiple C2 and transmembrane domain-containing protein 1|multiple C2-domains with two transmembrane regions 1 20121230 -9606 79774 GRTP1 RP11-391H12.7 TBC1D6 HGNC:20310|Ensembl:ENSG00000139835|HPRD:17080|Vega:OTTHUMG00000017381 13 13q34 growth hormone regulated TBC protein 1 protein-coding GRTP1 growth hormone regulated TBC protein 1 O TBC1 domain family member 6|TBC1 domain family, member 6|growth hormone-regulated TBC protein 1 20121230 -9606 79776 ZFHX4 - ZFH4|ZHF4 HGNC:30939|MIM:606940|Ensembl:ENSG00000091656|HPRD:09503|Vega:OTTHUMG00000164557 8 8q21.11 zinc finger homeobox 4 protein-coding ZFHX4 zinc finger homeobox 4 O zinc finger homeobox protein 4|zinc finger homeodomain protein 4|zinc-finger homeodomain protein 4 20121230 -9606 79777 ACBD4 HMFT0700 - HGNC:23337|Ensembl:ENSG00000181513|Vega:OTTHUMG00000180111 17 17q21.31 acyl-CoA binding domain containing 4 protein-coding ACBD4 acyl-CoA binding domain containing 4 O acyl-CoA-binding domain-containing protein 4|acyl-Coenzyme A binding domain containing 4 20121230 -9606 79778 MICALL2 UNQ5811 JRAB|MICAL-L2 HGNC:29672|Ensembl:ENSG00000164877|HPRD:11364|Vega:OTTHUMG00000119021 7 7p22.3 MICAL-like 2 protein-coding MICALL2 MICAL-like 2 O MICAL-like protein 2|junctional Rab13-binding protein 20121230 -9606 79780 CCDC82 HT025 HSPC048 HGNC:26282|Ensembl:ENSG00000149231|HPRD:08033|Vega:OTTHUMG00000167678 11 11q21 coiled-coil domain containing 82 protein-coding CCDC82 coiled-coil domain containing 82 O coiled-coil domain-containing protein 82 20121230 -9606 79781 IQCA1 - 4930465P12Rik|IQCA HGNC:26195|Ensembl:ENSG00000132321|HPRD:13743|Vega:OTTHUMG00000153058 2 2q37.3 IQ motif containing with AAA domain 1 protein-coding IQCA1 IQ motif containing with AAA domain 1 O IQ and AAA domain-containing protein 1 20121230 -9606 79782 LRRC31 UNQ9367/PRO34156 - HGNC:26261|Ensembl:ENSG00000114248|HPRD:08023|Vega:OTTHUMG00000164421 3 3q26.2 leucine rich repeat containing 31 protein-coding LRRC31 leucine rich repeat containing 31 O leucine-rich repeat-containing protein 31 20121230 -9606 79783 C7orf10 - DERP13|ORF19 HGNC:16001|MIM:609187|Ensembl:ENSG00000175600|HPRD:09859|Vega:OTTHUMG00000155094 7 7p14.1 chromosome 7 open reading frame 10 protein-coding C7orf10 chromosome 7 open reading frame 10 O Russel-Silver syndrome candidate|caiB/baiF CoA-transferase family protein C7orf10|dermal papilla-derived protein 13 20121230 -9606 79784 MYH14 FP17425 DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin HGNC:23212|MIM:608568|Ensembl:ENSG00000105357|HPRD:10543 19 19q13.33 myosin, heavy chain 14, non-muscle protein-coding MYH14 myosin, heavy chain 14, non-muscle O MYH14 variant protein|myosin heavy chain, non-muscle IIc|myosin, heavy polypeptide 14|myosin-14|non-muscle myosin heavy chain IIc|nonmuscle myosin heavy chain II-C 20121230 -9606 79785 RERGL - - HGNC:26213|Ensembl:ENSG00000111404|HPRD:08659|Vega:OTTHUMG00000168820 12 12p12.3 RERG/RAS-like protein-coding RERGL RERG/RAS-like O RERG/Ras-like protein|ras-related and estrogen-regulated growth inhibitor-like protein 20121230 -9606 79786 KLHL36 - C16orf44 HGNC:17844|Ensembl:ENSG00000135686|HPRD:12675|Vega:OTTHUMG00000137642 16 16q24.1 kelch-like 36 (Drosophila) protein-coding KLHL36 kelch-like 36 (Drosophila) O kelch-like protein 36 20121230 -9606 79788 ZNF665 - ZFP160L HGNC:25885|Ensembl:ENSG00000197497|HPRD:07856 19 19q13.42 zinc finger protein 665 protein-coding ZNF665 zinc finger protein 665 O - 20121230 -9606 79789 CLMN - - HGNC:19972|MIM:611121|Ensembl:ENSG00000165959|HPRD:13076|Vega:OTTHUMG00000171629 14 14q32.13 calmin (calponin-like, transmembrane) protein-coding CLMN calmin (calponin-like, transmembrane) O calmin|calponin like transmembrane domain protein|calponin-like transmembrane domain protein 20121230 -9606 79791 FBXO31 PP2386 FBX14|FBXO14|Fbx31|pp2386 HGNC:16510|MIM:609102|Ensembl:ENSG00000103264|HPRD:10954|Vega:OTTHUMG00000175685 16 16q24.2 F-box protein 31 protein-coding FBXO31 F-box protein 31 O F-box only protein 31|SCF ubiquitin ligase specificity factor|putative breast cancer tumor-suppressor 20121230 -9606 79792 GSDMD FKSG10 DF5L|DFNA5L|GSDMDC1 HGNC:25697|Ensembl:ENSG00000104518|HPRD:11014|Vega:OTTHUMG00000165132 8 8q24.3 gasdermin D protein-coding GSDMD gasdermin D O gasdermin domain containing 1|gasdermin domain-containing protein 1|gasdermin-D 20121230 -9606 79794 C12orf49 - - HGNC:26128|Ensembl:ENSG00000111412|HPRD:07962|Vega:OTTHUMG00000169392 12 12q24.22 chromosome 12 open reading frame 49 protein-coding C12orf49 chromosome 12 open reading frame 49 O UPF0454 protein C12orf49 20121230 -9606 79796 ALG9 - CDG1L|DIBD1|LOH11CR1J HGNC:15672|MIM:606941|Ensembl:ENSG00000086848|HPRD:09504|Vega:OTTHUMG00000166819 11 11q23 asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae) protein-coding ALG9 asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae) O alpha-1,2-mannosyltransferase ALG9|asparagine-linked glycosylation 9 homolog (S. cerevisiae, alpha- 1,2-mannosyltransferase)|asparagine-linked glycosylation 9 homolog (yeast, alpha- 1,2-mannosyltransferase)|asparagine-linked glycosylation protein 9 homolog|disrupted in bipolar affective disorder 1|disrupted in bipolar disorder protein 1|dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase|dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase|loss of heterozygosity, 11, chromosomal region 1 gene J product 20121230 -9606 79797 ZNF408 - - HGNC:20041|Ensembl:ENSG00000175213|HPRD:18338|Vega:OTTHUMG00000166568 11 11p11.2 zinc finger protein 408 protein-coding ZNF408 zinc finger protein 408 O PR domain zinc finger protein 17 20121230 -9606 79798 ARMC5 - - HGNC:25781|Ensembl:ENSG00000140691|HPRD:07809|Vega:OTTHUMG00000176618 16 16p11.2 armadillo repeat containing 5 protein-coding ARMC5 armadillo repeat containing 5 O armadillo repeat-containing protein 5 20121230 -9606 79799 UGT2A3 UNQ2559/PRO6239 - HGNC:28528|Ensembl:ENSG00000135220|HPRD:08646|Vega:OTTHUMG00000129408 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide A3 protein-coding UGT2A3 UDP glucuronosyltransferase 2 family, polypeptide A3 O UDP-glucuronosyltransferase 2A3|UDPGT 2A3 20121230 -9606 79800 ALS2CR8 - CARF|NYD-SP24 HGNC:14435|MIM:607586|Ensembl:ENSG00000138380|HPRD:10464|Vega:OTTHUMG00000154528 2 2q33.2 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8 protein-coding ALS2CR8 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8 O amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein|calcium-response factor|testis development protein NYD-SP24 20121230 -9606 79801 SHCBP1 - PAL HGNC:29547|MIM:611027|Ensembl:ENSG00000171241|HPRD:11557|Vega:OTTHUMG00000132540 16 16q11.2 SHC SH2-domain binding protein 1 protein-coding SHCBP1 SHC SH2-domain binding protein 1 O SHC SH2 domain-binding protein 1 20121230 -9606 79802 HHIPL2 RP11-378J18.1 KIAA1822L HGNC:25842|Ensembl:ENSG00000143512|HPRD:08587|Vega:OTTHUMG00000037545 1 1q41 HHIP-like 2 protein-coding HHIPL2 HHIP-like 2 O HHIP-like protein 2|hedgehog interacting protein-like 2 20121230 -9606 79803 HPS6 - RP11-302K17.1 HGNC:18817|MIM:607522|Ensembl:ENSG00000166189|HPRD:08471|Vega:OTTHUMG00000018945 10 10q24.32 Hermansky-Pudlak syndrome 6 protein-coding HPS6 Hermansky-Pudlak syndrome 6 O Hermansky-Pudlak syndrome 6 protein|Hermansky-Pudlak syndrome-6 protein (HPS6)|ruby-eye protein homolog 20121230 -9606 79804 NBLA00301 - DEIN - 4 4q34.1 Nbla00301 miscRNA - - - - 20121230 -9606 79805 VASH2 - RP11-275G3.1 HGNC:25723|MIM:610471|Ensembl:ENSG00000143494|HPRD:08574|Vega:OTTHUMG00000036925 1 1q32.3 vasohibin 2 protein-coding VASH2 vasohibin 2 O vasohibin-2|vasohibin-like protein 20121230 -9606 79807 GSTCD - - HGNC:25806|Ensembl:ENSG00000138780|HPRD:07823|Vega:OTTHUMG00000131211 4 4q24 glutathione S-transferase, C-terminal domain containing protein-coding GSTCD glutathione S-transferase, C-terminal domain containing O glutathione S-transferase C-terminal domain-containing protein 20121230 -9606 79809 TTC21B Nbla10696 ATD4|IFT139|JBTS11|NPHP12|THM1 HGNC:25660|MIM:612014|Ensembl:ENSG00000123607|HPRD:07752|Vega:OTTHUMG00000154083 2 2q24.3 tetratricopeptide repeat domain 21B protein-coding TTC21B tetratricopeptide repeat domain 21B O TPR repeat protein 21B|putative protein product of Nbla10696|tetratricopeptide repeat protein 21B 20121230 -9606 79810 PTCD2 - - HGNC:25734|Ensembl:ENSG00000049883|HPRD:15193|Vega:OTTHUMG00000100953 5 5q13.2 pentatricopeptide repeat domain 2 protein-coding PTCD2 pentatricopeptide repeat domain 2 O pentatricopeptide repeat-containing protein 2, mitochondrial 20121230 -9606 79811 SLTM - Met HGNC:20709|Ensembl:ENSG00000137776|HPRD:07819|Vega:OTTHUMG00000074033 15 15q22.1 SAFB-like, transcription modulator protein-coding SLTM SAFB-like, transcription modulator O SAFB-like transcription modulator|modulator of estrogen-induced transcription 20121230 -9606 79812 MMRN2 - EMILIN-3|EMILIN3|ENDOGLYX-1 HGNC:19888|MIM:608925|Ensembl:ENSG00000173269|HPRD:10601|Vega:OTTHUMG00000018663 10 10q23.2 multimerin 2 protein-coding MMRN2 multimerin 2 O EMILIN-like protein EndoGlyx-1|elastin microfibril interface located protein 3|elastin microfibril interfacer 3|endoGlyx-1 p125/p140 subunit|multimerin-2 20121230 -9606 79813 EHMT1 RP11-188C12.1 EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KMT1D|bA188C12.1 HGNC:24650|MIM:607001|Ensembl:ENSG00000181090|HPRD:07383|Vega:OTTHUMG00000020995 9 9q34.3 euchromatic histone-lysine N-methyltransferase 1 protein-coding EHMT1 euchromatic histone-lysine N-methyltransferase 1 O G9a like protein|G9a-like protein 1|H3-K9-HMTase 5|histone H3-K9 methyltransferase 5|histone-lysine N-methyltransferase EHMT1|histone-lysine N-methyltransferase, H3 lysine-9 specific 5|lysine N-methyltransferase 1D 20121230 -9606 79814 AGMAT - - HGNC:18407|Ensembl:ENSG00000116771|HPRD:12436|Vega:OTTHUMG00000002357 1 1p36.21 agmatine ureohydrolase (agmatinase) protein-coding AGMAT agmatine ureohydrolase (agmatinase) O AUH|agmatinase, mitochondrial 20121230 -9606 79815 NIPAL2 - NPAL2 HGNC:25854|Ensembl:ENSG00000104361|HPRD:08591|Vega:OTTHUMG00000164668 8 8q22.2 NIPA-like domain containing 2 protein-coding NIPAL2 NIPA-like domain containing 2 O NIPA-like protein 2 20121230 -9606 79816 TLE6 - GRG6 HGNC:30788|MIM:612399|Ensembl:ENSG00000104953|HPRD:18195|Vega:OTTHUMG00000156793 19 19p13.3 transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila) protein-coding TLE6 transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila) O transducin-like enhancer protein 6 20121230 -9606 79817 MOB3B - C9orf35|MOB1D|MOBKL2B HGNC:23825|Ensembl:ENSG00000120162|HPRD:14728|Vega:OTTHUMG00000019717 9 9p21.2 MOB kinase activator 3B protein-coding MOB3B MOB kinase activator 3B O MOB1, Mps One Binder kinase activator-like 2B|mob1 homolog 2b|monopolar spindle 1 binding, MOB1, domain containing|mps one binder kinase activator-like 2B 20121230 -9606 79818 ZNF552 - - HGNC:26135|Ensembl:ENSG00000178935|HPRD:15835 19 19q13.43 zinc finger protein 552 protein-coding ZNF552 zinc finger protein 552 O - 20121230 -9606 79819 WDR78 RP11-342H21.1 - HGNC:26252|Ensembl:ENSG00000152763|HPRD:08017|Vega:OTTHUMG00000009165 1 1p31.3 WD repeat domain 78 protein-coding WDR78 WD repeat domain 78 O WD repeat-containing protein 78 20121230 -9606 79820 CATSPERB - C14orf161|CatSper(beta) HGNC:20500|MIM:611169|Ensembl:ENSG00000133962|HPRD:16613|Vega:OTTHUMG00000171118 14 14q32.12 catsper channel auxiliary subunit beta protein-coding CATSPERB catsper channel auxiliary subunit beta O catSper-beta|cation channel sperm-associated protein subunit beta|cation channel, sperm associated beta|cation channel, sperm-associated, beta 20121230 -9606 79822 ARHGAP28 - - HGNC:25509|MIM:610592|Ensembl:ENSG00000088756|HPRD:10961|Vega:OTTHUMG00000167698 18 18p11.31 Rho GTPase activating protein 28 protein-coding ARHGAP28 Rho GTPase activating protein 28 O rho GTPase-activating protein 28|rho-type GTPase-activating protein 28 20121230 -9606 79823 CAMKMT - C2orf34|CLNMT|CaM KMT|Cam|KMT HGNC:26276|MIM:609559|Ensembl:ENSG00000143919|HPRD:08028|Vega:OTTHUMG00000128761 2 2p21 calmodulin-lysine N-methyltransferase protein-coding CAMKMT calmodulin-lysine N-methyltransferase O - 20121230 -9606 79825 CCDC48 - C3orf73 HGNC:25692|Ensembl:ENSG00000114654|HPRD:08569|Vega:OTTHUMG00000158996 3 3q21.3 coiled-coil domain containing 48 protein-coding CCDC48 coiled-coil domain containing 48 O EF-hand domain-containing protein ENSP00000381169|coiled-coil domain-containing protein 48 20121230 -9606 79827 CLMP UNQ318/PRO363 ACAM|ASAM HGNC:24039|MIM:611693|Ensembl:ENSG00000166250|HPRD:16513|Vega:OTTHUMG00000166031 11 11q24.1 CXADR-like membrane protein protein-coding CLMP CXADR-like membrane protein O CAR-like membrane protein|adipocyte adhesion molecule|adipocyte-specific adhesion molecule|coxsackie- and adenovirus receptor-like membrane protein 20121230 -9606 79828 METTL8 - TIP HGNC:25856|MIM:609525|Ensembl:ENSG00000123600|HPRD:07845|Vega:OTTHUMG00000132261 2 2q31.1 methyltransferase like 8 protein-coding METTL8 methyltransferase like 8 O methyltransferase-like protein 8|tension-induced/inhibited protein 20121230 -9606 79829 NAA40 - NAT11|PATT1 HGNC:25845|Ensembl:ENSG00000110583|HPRD:07838|Vega:OTTHUMG00000167784 11 11q13.1 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) protein-coding NAA40 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) O N-acetyltransferase 11 (GCN5-related, putative)|N-alpha acetyl transferase 40|N-alpha-acetyltransferase 40|N-alpha-acetyltransferase 40, NatD catalytic subunit|natD catalytic subunit 20121230 -9606 79830 ZMYM1 RP11-248I9.4 MYM|RP11-181E22.4 HGNC:26253|Ensembl:ENSG00000197056|HPRD:15739|Vega:OTTHUMG00000004374 1 1p34.3 zinc finger, MYM-type 1 protein-coding ZMYM1 zinc finger, MYM-type 1 O zinc finger MYM-type protein 1|zinc finger, MYM domain containing 1 20121230 -9606 79831 KDM8 - JMJD5 HGNC:25840|MIM:611917|Ensembl:ENSG00000155666|HPRD:07836|Vega:OTTHUMG00000131677 16 16p12.1 lysine (K)-specific demethylase 8 protein-coding KDM8 lysine (K)-specific demethylase 8 O jmjC domain-containing protein 5|jumonji domain containing 5|jumonji domain-containing protein 5|lysine-specific demethylase 8 20121230 -9606 79832 QSER1 - - HGNC:26154|Ensembl:ENSG00000060749|HPRD:08645|Vega:OTTHUMG00000166220 11 11p13 glutamine and serine rich 1 protein-coding QSER1 glutamine and serine rich 1 O glutamine and serine-rich protein 1 20121230 -9606 79833 GEMIN6 - - HGNC:20044|MIM:607006|Ensembl:ENSG00000152147|HPRD:06110|Vega:OTTHUMG00000128588 2 2p22.1 gem (nuclear organelle) associated protein 6 protein-coding GEMIN6 gem (nuclear organelle) associated protein 6 O SIP2|gem-associated protein 6|gemin 6|gemin-6 20121230 -9606 79834 PEAK1 - SGK269 MIM:614248|Ensembl:ENSG00000173517|Vega:OTTHUMG00000172618 15 15q24.3 NKF3 kinase family member protein-coding - - - pseudopodium enriched atypical kinase|pseudopodium-enriched atypical kinase 1|sugen kinase 269|tyrosine-protein kinase SgK269 20121230 -9606 79836 LONRF3 RP13-347D8.4 RNF127 HGNC:21152|Ensembl:ENSG00000175556|HPRD:06708|Vega:OTTHUMG00000022262 X Xq24 LON peptidase N-terminal domain and ring finger 3 protein-coding LONRF3 LON peptidase N-terminal domain and ring finger 3 O LON peptidase N-terminal domain and RING finger protein 3|ring finger protein 127 20121230 -9606 79837 PIP4K2C - PIP5K2C HGNC:23786|Ensembl:ENSG00000166908|HPRD:15138|Vega:OTTHUMG00000170144 12 12q13.3 phosphatidylinositol-5-phosphate 4-kinase, type II, gamma protein-coding PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma O PI(5)P 4-kinase type II gamma|PIP4KII-gamma|phosphatidylinositol 4-phosphate 5-kinase|phosphatidylinositol 5-phosphate 4-kinase type II gamma|phosphatidylinositol 5-phosphate 4-kinase type-2 gamma|phosphatidylinositol-4-phosphate 5-kinase, type II, gamma|phosphatidylinositol-5-phosphate 4-kinase type-2 gamma 20121230 -9606 79838 TMC5 UNQ8238/PRO33604 - HGNC:22999|Ensembl:ENSG00000103534|HPRD:15516|Vega:OTTHUMG00000131458 16 16p12.3 transmembrane channel-like 5 protein-coding TMC5 transmembrane channel-like 5 O transmembrane channel-like protein 5 20121230 -9606 79839 CCDC102B - ACY1L|AN|C18orf14|HsT1731 HGNC:26295|Ensembl:ENSG00000150636|HPRD:08038|Vega:OTTHUMG00000132808 18 18q22.1 coiled-coil domain containing 102B protein-coding CCDC102B coiled-coil domain containing 102B O coiled-coil domain-containing protein 102B 20121230 -9606 79840 NHEJ1 - XLF HGNC:25737|MIM:611290|Ensembl:ENSG00000187736|HPRD:07784|Vega:OTTHUMG00000133127 2 2q35 nonhomologous end-joining factor 1 protein-coding NHEJ1 nonhomologous end-joining factor 1 O XRCC4-like factor|non-homologous end-joining factor 1|protein cernunnos 20121230 -9606 79841 AGBL2 - - HGNC:26296|Ensembl:ENSG00000165923|HPRD:08039|Vega:OTTHUMG00000165368 11 11p11.2 ATP/GTP binding protein-like 2 protein-coding AGBL2 ATP/GTP binding protein-like 2 O cytosolic carboxypeptidase 2 20121230 -9606 79842 ZBTB3 - - HGNC:22918|Ensembl:ENSG00000185670|HPRD:15693|Vega:OTTHUMG00000167608 11 11q12.3 zinc finger and BTB domain containing 3 protein-coding ZBTB3 zinc finger and BTB domain containing 3 O zinc finger and BTB domain-containing protein 3 20121230 -9606 79843 FAM124B - - HGNC:26224|Ensembl:ENSG00000124019|HPRD:08663|Vega:OTTHUMG00000133168 2 2q36.2 family with sequence similarity 124B protein-coding FAM124B family with sequence similarity 124B O protein FAM124B 20121230 -9606 79844 ZDHHC11 UNQ598 ZNF399 HGNC:19158|Ensembl:ENSG00000188818|HPRD:15708|Vega:OTTHUMG00000090319 5 5p15.33 zinc finger, DHHC-type containing 11 protein-coding ZDHHC11 zinc finger, DHHC-type containing 11 O DHHC-11|probable palmitoyltransferase ZDHHC11|zinc finger DHHC domain-containing protein 11|zinc finger protein 399|zinc finger, DHHC domain containing 11 20121230 -9606 79845 RNF122 - - HGNC:21147|Ensembl:ENSG00000133874|HPRD:11498|Vega:OTTHUMG00000163960 8 8p12 ring finger protein 122 protein-coding RNF122 ring finger protein 122 O RING finger protein 122 20121230 -9606 79846 C7orf63 - - HGNC:26107|Ensembl:ENSG00000105792|HPRD:08633|Vega:OTTHUMG00000023434 7 7q21.13 chromosome 7 open reading frame 63 protein-coding C7orf63 chromosome 7 open reading frame 63 O uncharacterized protein C7orf63 20121230 -9606 79847 TMEM180 RP11-18I14.8 C10orf77|bA18I14.8 HGNC:26196|Ensembl:ENSG00000138111|HPRD:12589 10 10q24.32 transmembrane protein 180 protein-coding TMEM180 transmembrane protein 180 O - 20121230 -9606 79848 CSPP1 - CSPP HGNC:26193|MIM:611654|Ensembl:ENSG00000104218|HPRD:07991|Vega:OTTHUMG00000164564 8 8q13.2 centrosome and spindle pole associated protein 1 protein-coding CSPP1 centrosome and spindle pole associated protein 1 O centrosome and spindle pole-associated protein 1 20121230 -9606 79849 PDZD3 DLNB27 IKEPP|NHERF4|PDZK2 HGNC:19891|MIM:607146|Ensembl:ENSG00000172367|HPRD:06191|Vega:OTTHUMG00000166224 11 11q23.3 PDZ domain containing 3 protein-coding PDZD3 PDZ domain containing 3 O NHERF-4|Na(+)/H(+) exchange regulatory cofactor NHE-RF4|PDZ domain containing 2|PDZ domain-containing protein 2|PDZ domain-containing protein 3|intestinal and kidney enriched PDZ protein|intestinal and kidney-enriched PDZ protein|na/Pi cotransporter C-terminal-associated protein 2|naPi-Cap2|natrium-phosphate cotransporter IIa C-terminal-associated protein 2|sodium-hydrogen exchanger regulatory factor 4 20121230 -9606 79850 FAM57A - CT120 HGNC:29646|MIM:611627|Ensembl:ENSG00000167695|HPRD:13096|Vega:OTTHUMG00000177491 17 17p13.3 family with sequence similarity 57, member A protein-coding FAM57A family with sequence similarity 57, member A O membrane protein expressed in epithelial-like lung adenocarcinoma|protein FAM57A 20121230 -9606 79852 EPHX3 - ABHD9 HGNC:23760|Ensembl:ENSG00000105131|HPRD:12410 19 19p13.12 epoxide hydrolase 3 protein-coding EPHX3 epoxide hydrolase 3 O abhydrolase domain containing 9|abhydrolase domain-containing protein 9 20121230 -9606 79853 TM4SF20 UNQ518/PRO994 PRO994|TCCE518 HGNC:26230|Ensembl:ENSG00000168955|HPRD:08008|Vega:OTTHUMG00000133187 2 2q36.3 transmembrane 4 L six family member 20 protein-coding TM4SF20 transmembrane 4 L six family member 20 O transmembrane 4 L6 family member 20 20121230 -9606 79854 LINC00115 RP11-206L10.16-001 NCRNA00115 HGNC:26211|HPRD:08000 1 1p36.33 long intergenic non-protein coding RNA 115 miscRNA LINC00115 long intergenic non-protein coding RNA 115 O - 20121230 -9606 79856 SNX22 - - HGNC:16315|Ensembl:ENSG00000157734|HPRD:15412|Vega:OTTHUMG00000132965 15 15q22.31 sorting nexin 22 protein-coding SNX22 sorting nexin 22 O sorting nexin-22 20121230 -9606 79857 FLJ13224 - - - 12 12p11.21 uncharacterized LOC79857 miscRNA - - - - 20121230 -9606 79858 NEK11 - - HGNC:18593|MIM:609779|Ensembl:ENSG00000114670|HPRD:14821|Vega:OTTHUMG00000159654 3 3q22.1 NIMA-related kinase 11 protein-coding NEK11 NIMA-related kinase 11 O NIMA (never in mitosis gene a)- related kinase 11|serine/threonine-protein kinase Nek11 20121230 -9606 79860 FLJ21369 - - - 19 19q13.11 uncharacterized protein FLJ21369 unknown - - - - 20121230 -9606 79861 TUBAL3 - - HGNC:23534|Ensembl:ENSG00000178462|HPRD:08640|Vega:OTTHUMG00000017595 10 10p15.1 tubulin, alpha-like 3 protein-coding TUBAL3 tubulin, alpha-like 3 O tubulin alpha chain-like 3 20121230 -9606 79862 ZNF669 RP11-107G24.2 - HGNC:25736|Ensembl:ENSG00000188295|HPRD:07783|Vega:OTTHUMG00000040869 1 1q44 zinc finger protein 669 protein-coding ZNF669 zinc finger protein 669 O - 20121230 -9606 79863 RBFA - C18orf22|HsT169 HGNC:26120|Ensembl:ENSG00000101546|HPRD:07959|Vega:OTTHUMG00000132923 18 18q23 ribosome binding factor A (putative) protein-coding RBFA ribosome binding factor A (putative) O putative ribosome-binding factor A, mitochondrial 20121230 -9606 79864 C11orf63 - - HGNC:26288|Ensembl:ENSG00000109944|HPRD:08035|Vega:OTTHUMG00000166027 11 11q24.1 chromosome 11 open reading frame 63 protein-coding C11orf63 chromosome 11 open reading frame 63 O uncharacterized protein C11orf63 20121230 -9606 79865 TREML2 UNQ6268/PRO20473 C6orf76|TLT-2|TLT2|dJ238O23.1 HGNC:21092|MIM:609715|Ensembl:ENSG00000112195|HPRD:11646|Vega:OTTHUMG00000016349 6 6p21.1 triggering receptor expressed on myeloid cells-like 2 protein-coding TREML2 triggering receptor expressed on myeloid cells-like 2 O trem-like transcript 2 protein|triggering receptor expressed on myeloid cells-like protein 2 20121230 -9606 79866 BORA RP11-342J4.2 C13orf34 HGNC:24724|MIM:610510|Ensembl:ENSG00000136122|HPRD:13389|Vega:OTTHUMG00000017068 13 13q22.1 bora, aurora kinase A activator protein-coding BORA bora, aurora kinase A activator O aurora borealis|hsBora|protein aurora borealis 20121230 -9606 79867 TCTN2 - C12orf38|MKS8|TECT2 HGNC:25774|MIM:613846|Ensembl:ENSG00000168778|HPRD:07805|Vega:OTTHUMG00000168700 12 12q24.31 tectonic family member 2 protein-coding TCTN2 tectonic family member 2 O tectonic-2 20121230 -9606 79868 ALG13 RP1-298J18.2 CDG1S|CXorf45|GLT28D1|MDS031|YGL047W HGNC:30881|MIM:300776|Ensembl:ENSG00000101901|HPRD:06542|Vega:OTTHUMG00000022209 X Xq23 asparagine-linked glycosylation 13 homolog (S. cerevisiae) protein-coding ALG13 asparagine-linked glycosylation 13 homolog (S. cerevisiae) O UDP-N-acetylglucosamine transferase subunit ALG13 homolog|glycosyltransferase 28 domain-containing protein 1|hematopoietic stem/progenitor cells protein MDS031 20121230 -9606 79869 CPSF7 - CFIm59 HGNC:30098|Ensembl:ENSG00000149532|HPRD:16906|Vega:OTTHUMG00000168198 11 11q12.2 cleavage and polyadenylation specific factor 7, 59kDa protein-coding CPSF7 cleavage and polyadenylation specific factor 7, 59kDa O CPSF 59 kDa subunit|cleavage and polyadenylation specificity factor 59 kDa subunit|cleavage and polyadenylation specificity factor subunit 7|pre mRNA cleavage factor I, 59 kDa subunit|pre-mRNA cleavage factor I, 59 kDa subunit|pre-mRNA cleavage factor Im 59 kDa subunit 20121230 -9606 79870 BAALC - - HGNC:14333|MIM:606602|Ensembl:ENSG00000164929|HPRD:09422|Vega:OTTHUMG00000164782 8 8q22.3 brain and acute leukemia, cytoplasmic protein-coding BAALC brain and acute leukemia, cytoplasmic O brain and acute leukemia cytoplasmic protein 20121230 -9606 79871 RPAP2 - C1orf82 HGNC:25791|MIM:611476|Ensembl:ENSG00000122484|HPRD:07814|Vega:OTTHUMG00000010288 1 1p22.1 RNA polymerase II associated protein 2 protein-coding RPAP2 RNA polymerase II associated protein 2 O RNA polymerase II-associated protein 2|putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 20121230 -9606 79872 CBLL1 - HAKAI|RNF188 HGNC:21225|MIM:606872|Ensembl:ENSG00000105879|HPRD:07590|Vega:OTTHUMG00000154809 7 7q22.3 Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1 protein-coding CBLL1 Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1 O Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1|E-cadherin binding protein E7|E3 ubiquitin-protein ligase Hakai|RING finger protein 188|c-Cbl-like protein 1|casitas B-lineage lymphoma-transforming sequence-like protein 1 20121230 -9606 79873 NUDT18 - MTH3 HGNC:26194|Ensembl:ENSG00000173566|HPRD:07992|Vega:OTTHUMG00000163774 8 8p21.3 nudix (nucleoside diphosphate linked moiety X)-type motif 18 protein-coding NUDT18 nudix (nucleoside diphosphate linked moiety X)-type motif 18 O mutT human homolog 3|nucleoside diphosphate-linked moiety X motif 18|nudix motif 18 20121230 -9606 79874 RABEP2 - FRA HGNC:24817|MIM:611869|Ensembl:ENSG00000177548|HPRD:17948|Vega:OTTHUMG00000176593 16 16p11.2 rabaptin, RAB GTPase binding effector protein 2 protein-coding RABEP2 rabaptin, RAB GTPase binding effector protein 2 O Rabaptin-5 beta|rab GTPase-binding effector protein 2|rabaptin-5beta 20121230 -9606 79875 THSD4 UNQ9334/PRO34005 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 HGNC:25835|MIM:614476|Ensembl:ENSG00000187720|HPRD:07835|Vega:OTTHUMG00000133389 15 15q23 thrombospondin, type I, domain containing 4 protein-coding THSD4 thrombospondin, type I, domain containing 4 O A disintegrin and metalloproteinase with thrombospondin motifs-like protein 6|ADAMTS-like protein 6|thrombospondin type-1 domain-containing protein 4 20121230 -9606 79876 UBA5 - THIFP1|UBE1DC1 HGNC:23230|MIM:610552|Ensembl:ENSG00000081307|HPRD:15598|Vega:OTTHUMG00000159759 3 3q22.1 ubiquitin-like modifier activating enzyme 5 protein-coding UBA5 ubiquitin-like modifier activating enzyme 5 O UBA5, ubiquitin-activating enzyme E1 homolog|UFM1-activating enzyme|ubiquitin-activating enzyme 5|ubiquitin-activating enzyme E1 domain-containing protein 1|ubiquitin-activating enzyme E1-domain containing 1|ubiquitin-like modifier-activating enzyme 5 20121230 -9606 79877 DCAKD - - HGNC:26238|Ensembl:ENSG00000172992|HPRD:08012|Vega:OTTHUMG00000179947 17 17q21.31 dephospho-CoA kinase domain containing protein-coding DCAKD dephospho-CoA kinase domain containing O dephospho-CoA kinase domain-containing protein 20121230 -9606 79879 CCDC134 RP5-821D11.6 dJ821D11.3 HGNC:26185|Ensembl:ENSG00000100147|HPRD:07988|Vega:OTTHUMG00000151262 22 22q13.2 coiled-coil domain containing 134 protein-coding CCDC134 coiled-coil domain containing 134 O coiled-coil domain-containing protein 134 20121230 -9606 79882 ZC3H14 - MSUT-2|NY-REN-37|SUT2|UKp68 HGNC:20509|MIM:613279|Ensembl:ENSG00000100722|HPRD:13348|Vega:OTTHUMG00000170803 14 14q31.3 zinc finger CCCH-type containing 14 protein-coding ZC3H14 zinc finger CCCH-type containing 14 O mammalian suppressor of tau pathology-2|nuclear protein UKp68|renal carcinoma antigen NY-REN-37|zinc finger CCCH domain-containing protein 14 20121230 -9606 79883 PODNL1 - SLRR5B HGNC:26275|Ensembl:ENSG00000132000|HPRD:08027|Vega:OTTHUMG00000181853 19 19p13.12 podocan-like 1 protein-coding PODNL1 podocan-like 1 O podocan-like protein 1 20121230 -9606 79884 MAP9 - ASAP HGNC:26118|MIM:610070|Ensembl:ENSG00000164114|HPRD:07957|Vega:OTTHUMG00000133628 4 4q32.1 microtubule-associated protein 9 protein-coding MAP9 microtubule-associated protein 9 O aster-associated protein 20121230 -9606 79885 HDAC11 - HD11 HGNC:19086|MIM:607226|Ensembl:ENSG00000163517|HPRD:09146|Vega:OTTHUMG00000129800 3 3p25.1 histone deacetylase 11 protein-coding HDAC11 histone deacetylase 11 O - 20121230 -9606 79886 CAAP1 - C9orf82|CAAP|RP11-337A23.1 HGNC:25834|Ensembl:ENSG00000120159|HPRD:12981|Vega:OTTHUMG00000019706 9 9p21.2 caspase activity and apoptosis inhibitor 1 protein-coding CAAP1 caspase activity and apoptosis inhibitor 1 O conserved anti-apoptotic protein 20121230 -9606 79887 PLBD1 - - HGNC:26215|Ensembl:ENSG00000121316|HPRD:08660|Vega:OTTHUMG00000168821 12 12p13.1 phospholipase B domain containing 1 protein-coding PLBD1 phospholipase B domain containing 1 O LAMA-like protein 1|PLB homolog 1|lamina ancestor homolog 1|phospholipase B domain-containing protein 1|phospholipase B-like 1|putative phospholipase B-like 1 20121230 -9606 79888 LPCAT1 - AYTL2|PFAAP3|lpcat HGNC:25718|MIM:610472|Ensembl:ENSG00000153395|HPRD:08572|Vega:OTTHUMG00000131017 5 5p15.33 lysophosphatidylcholine acyltransferase 1 protein-coding LPCAT1 lysophosphatidylcholine acyltransferase 1 O 1-acylglycerophosphocholine O-acyltransferase|1-alkylglycerophosphocholine O-acetyltransferase|LPC acyltransferase 1|LPCAT-1|acetyl-CoA:lyso-PAF acetyltransferase|acetyl-CoA:lyso-platelet-activating factor acetyltransferase|acyl-CoA:lysophosphatidylcholine acyltransferase 1|acyltransferase like 2|acyltransferase-like 2|lyso-PAF acetyltransferase|lysoPAFAT|lysoPC acyltransferase 1|phosphonoformate immuno-associated protein 3|regulated by phosphonoformate 20121230 -9606 79890 RIN3 - - HGNC:18751|MIM:610223|Ensembl:ENSG00000100599|HPRD:11494|Vega:OTTHUMG00000171198 14 14q32.12 Ras and Rab interactor 3 protein-coding RIN3 Ras and Rab interactor 3 O RAB5 interacting protein 3|ras and Rab interactor 3|ras interaction/interference protein 3 20121230 -9606 79891 ZNF671 - - HGNC:26279|Ensembl:ENSG00000083814|HPRD:08031 19 19q13.43 zinc finger protein 671 protein-coding ZNF671 zinc finger protein 671 O - 20121230 -9606 79892 MCMBP - C10orf119|MCM-BP HGNC:25782|MIM:610909|Ensembl:ENSG00000197771|HPRD:07624|Vega:OTTHUMG00000019159 10 10q26.11 minichromosome maintenance complex binding protein protein-coding MCMBP minichromosome maintenance complex binding protein O MCM-binding protein|mini-chromosome maintenance complex-binding protein|minichromosome maintenance complex-binding protein 20121230 -9606 79893 GGNBP2 - DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 HGNC:19357|MIM:612275|Ensembl:ENSG00000005955|HPRD:18337|Vega:OTTHUMG00000133063 17 17q12 gametogenetin binding protein 2 protein-coding GGNBP2 gametogenetin binding protein 2 O C3HC4-type zinc finger protein|gametogenetin-binding protein 2|laryngeal carcinoma related gene 1|laryngeal carcinoma-related protein 1|zinc finger protein 403 20121230 -9606 79894 ZNF672 - - HGNC:26179|Ensembl:ENSG00000171161|HPRD:07983|Vega:OTTHUMG00000040377 1 1q44 zinc finger protein 672 protein-coding ZNF672 zinc finger protein 672 O - 20121230 -9606 79895 ATP8B4 - ATPIM HGNC:13536|MIM:609123|Ensembl:ENSG00000104043|HPRD:10681|Vega:OTTHUMG00000172368 15 15q21.2 ATPase, class I, type 8B, member 4 protein-coding ATP8B4 ATPase, class I, type 8B, member 4 O potential phospholipid-transporting ATPase IM|probable phospholipid-transporting ATPase IM 20121230 -9606 79896 THNSL1 - TSH1 HGNC:26160|MIM:611260|Ensembl:ENSG00000185875|HPRD:07974|Vega:OTTHUMG00000017828 10 10p12.1 threonine synthase-like 1 (S. cerevisiae) protein-coding THNSL1 threonine synthase-like 1 (S. cerevisiae) O threonine synthase-like 1 20121230 -9606 79897 RPP21 DAQB-170I5.4 C6orf135|CAT60 HGNC:21300|MIM:612524|Ensembl:ENSG00000241370|HPRD:15275|Vega:OTTHUMG00000031220 6 6p22.1 ribonuclease P/MRP 21kDa subunit protein-coding RPP21 ribonuclease P/MRP 21kDa subunit O RNaseP protein p21|ribonuclease P protein subunit p21|ribonucleoprotein V 20121230 -9606 79898 ZNF613 - - HGNC:25827|Ensembl:ENSG00000176024|HPRD:15873 19 19q13.41 zinc finger protein 613 protein-coding ZNF613 zinc finger protein 613 O - 20121230 -9606 79899 PRR5L - PROTOR2 HGNC:25878|MIM:611728|Ensembl:ENSG00000135362|HPRD:07854|Vega:OTTHUMG00000166334 11 11p13-p12 proline rich 5 like protein-coding PRR5L proline rich 5 like O Protein observed with Rictor-2|proline-rich protein 5-like|protor-2 20121230 -9606 79901 CYBRD1 - DCYTB|FRRS3 HGNC:20797|MIM:605745|Ensembl:ENSG00000071967|HPRD:05764|Vega:OTTHUMG00000132260 2 2q31.1 cytochrome b reductase 1 protein-coding CYBRD1 cytochrome b reductase 1 O duodenal cytochrome b|ferric-chelate reductase 3 20121230 -9606 79902 NUP85 - Nup75 HGNC:8734|MIM:170285|Ensembl:ENSG00000125450|HPRD:01363|Vega:OTTHUMG00000179482 17 17q25.1 nucleoporin 85kDa protein-coding NUP85 nucleoporin 85kDa O 85 kDa nucleoporin|frount|nuclear pore complex protein Nup85|nucleoporin Nup75|nucleoporin Nup85|pericentrin-1 20121230 -9606 79903 NAA60 UNQ2771/PRO7155 HAT4|NAT15 HGNC:25875|MIM:614246|Ensembl:ENSG00000122390|HPRD:07852|Vega:OTTHUMG00000150268 16 16p13.3 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit O N-acetyltransferase 15 (GCN5-related, putative)|N-alpha-acetyltransferase 60|histone acetyltransferase type B protein 4|natF catalytic subunit 20121230 -9606 79904 FLJ11710 - - - 17 17q23.2 uncharacterized protein FLJ11710 unknown - - - - 20120126 -9606 79905 TMC7 - - HGNC:23000|Ensembl:ENSG00000170537|HPRD:15517|Vega:OTTHUMG00000131456 16 16p12.3 transmembrane channel-like 7 protein-coding TMC7 transmembrane channel-like 7 O transmembrane channel-like protein 7 20121230 -9606 79906 MORN1 RP4-740C4.1 - HGNC:25852|Ensembl:ENSG00000116151|HPRD:07843|Vega:OTTHUMG00000001402 1 1p36.33-p36.32 MORN repeat containing 1 protein-coding MORN1 MORN repeat containing 1 O MORN repeat-containing protein 1 20121230 -9606 79908 BTNL8 UNQ702/PRO1347 - HGNC:26131|Ensembl:ENSG00000113303|HPRD:12549|Vega:OTTHUMG00000130932 5 5q35.3 butyrophilin-like 8 protein-coding BTNL8 butyrophilin-like 8 O B7-H5 costimulatory molecule|butyrophilin-like protein 8 20121230 -9606 79912 PYROXD1 - - HGNC:26162|Ensembl:ENSG00000121350|HPRD:07976|Vega:OTTHUMG00000169129 12 12p12.1 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding PYROXD1 pyridine nucleotide-disulphide oxidoreductase domain 1 O pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 20121230 -9606 79913 ACTR5 - Arp5|INO80M HGNC:14671|Ensembl:ENSG00000101442|HPRD:08575|Vega:OTTHUMG00000032456 20 20q11.23 ARP5 actin-related protein 5 homolog (yeast) protein-coding ACTR5 ARP5 actin-related protein 5 homolog (yeast) O INO80 complex subunit M|actin-related protein 5|hARP5|sarcoma antigen NY-SAR-16 20121230 -9606 79915 ATAD5 - C17orf41|ELG1|FRAG1 HGNC:25752|MIM:609534|Ensembl:ENSG00000176208|HPRD:07792|Vega:OTTHUMG00000132794 17 17q11.2 ATPase family, AAA domain containing 5 protein-coding ATAD5 ATPase family, AAA domain containing 5 O ATPase family AAA domain-containing protein 5|chromosome fragility associated gene 1|chromosome fragility-associated gene 1 protein|enhanced level of genomic instability 1 homolog 20121230 -9606 79917 MAGIX - JM10|PDZX HGNC:30006|Ensembl:ENSG00000017621|HPRD:06538|Vega:OTTHUMG00000034501 X Xp11.23 MAGI family member, X-linked protein-coding MAGIX MAGI family member, X-linked O PDZ domain containing protein|PDZ domain containing, X chromosome|PDZ domain-containing protein MAGIX 20121230 -9606 79918 SETD6 - - HGNC:26116|Ensembl:ENSG00000103037|HPRD:07956|Vega:OTTHUMG00000150276 16 16q21 SET domain containing 6 protein-coding SETD6 SET domain containing 6 O N-lysine methyltransferase SETD6|SET domain-containing protein 6 20121230 -9606 79919 C2orf54 - - HGNC:26216|Ensembl:ENSG00000172478|HPRD:08003|Vega:OTTHUMG00000151906 2 2q37.3 chromosome 2 open reading frame 54 protein-coding C2orf54 chromosome 2 open reading frame 54 O uncharacterized protein C2orf54 20121230 -9606 79921 TCEAL4 GHc-857G6.2 NPD017 HGNC:26121|Ensembl:ENSG00000133142|HPRD:06537|Vega:OTTHUMG00000022103 X Xq22.2 transcription elongation factor A (SII)-like 4 protein-coding TCEAL4 transcription elongation factor A (SII)-like 4 O TCEA-like protein 4|transcription elongation factor A protein-like 4|transcription elongation factor S-II protein-like 4 20121230 -9606 79922 MRM1 - - HGNC:26202|Ensembl:ENSG00000129282|HPRD:08656|Vega:OTTHUMG00000180446 17 17q12 mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) protein-coding MRM1 mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) O mitochondrial large ribosomal RNA ribose methylase|rRNA methyltransferase 1, mitochondrial 20121230 -9606 79923 NANOG - - HGNC:20857|MIM:607937|Ensembl:ENSG00000111704|HPRD:06397|Vega:OTTHUMG00000166019 12 12p13.31 Nanog homeobox protein-coding NANOG Nanog homeobox O hNanog|homeobox protein NANOG|homeobox transcription factor Nanog|homeobox transcription factor Nanog-delta 48 20121230 -9606 79924 ADM2 RP4-579N16.10-002 AM2|dJ579N16.4 HGNC:28898|MIM:608682|Ensembl:ENSG00000128165|HPRD:10563|Vega:OTTHUMG00000150202 22 22q13.33 adrenomedullin 2 protein-coding ADM2 adrenomedullin 2 O intermedin 20121230 -9606 79925 SPEF2 - CT122|KPL2 HGNC:26293|MIM:610172|Ensembl:ENSG00000152582|HPRD:11181|Vega:OTTHUMG00000131111 5 5p13.2 sperm flagellar 2 protein-coding SPEF2 sperm flagellar 2 O cancer/testis antigen 122|sperm flagellar protein 2 20121230 -9606 79927 FAM110D - GRRP1|RP11-96L14.5 HGNC:25860|Ensembl:ENSG00000197245|HPRD:07848|Vega:OTTHUMG00000007537 1 1p36.11 family with sequence similarity 110, member D protein-coding FAM110D family with sequence similarity 110, member D O glycine/arginine rich protein 1|glycine/arginine-rich protein 1|protein FAM110D 20121230 -9606 79929 MAP6D1 - MAPO6D1|SL21 HGNC:25753|MIM:610593|Ensembl:ENSG00000180834|HPRD:07793|Vega:OTTHUMG00000156900 3 3q27.1 MAP6 domain containing 1 protein-coding MAP6D1 MAP6 domain containing 1 O 21 kDa STOP-like protein|MAP6 domain-containing protein 1|STOP-like protein 21 20121230 -9606 79930 DOK3 - DOKL HGNC:24583|MIM:611435|Ensembl:ENSG00000146094|HPRD:16834|Vega:OTTHUMG00000130850 5 5q35.3 docking protein 3 protein-coding DOK3 docking protein 3 O Dok-like protein|downstream of tyrosine kinase 3 20121230 -9606 79931 TNIP3 - ABIN-3|LIND HGNC:19315|MIM:608019|Ensembl:ENSG00000050730|HPRD:16268|Vega:OTTHUMG00000132969 4 4q27 TNFAIP3 interacting protein 3 protein-coding TNIP3 TNFAIP3 interacting protein 3 O A20-binding inhibitor of NF-kappa-B activation 3|ABIN-3 beta|Listeria induced|TNFAIP3-interacting protein 3|TNFAIP3-interacting protein 3 beta|TNIP3 beta|listeria-induced gene protein 20121230 -9606 79932 KIAA0319L PP791 - HGNC:30071|MIM:613535|Ensembl:ENSG00000142687|HPRD:11164|Vega:OTTHUMG00000004370 1 1p34.2 KIAA0319-like protein-coding KIAA0319L KIAA0319-like O dyslexia-associated protein KIAA0319-like protein|polycystic kidney disease 1-related 20121230 -9606 79933 SYNPO2L - - HGNC:23532|Ensembl:ENSG00000166317|HPRD:15457|Vega:OTTHUMG00000018471 10 10q22.2 synaptopodin 2-like protein-coding SYNPO2L synaptopodin 2-like O synaptopodin 2-like protein 20121230 -9606 79934 ADCK4 - - HGNC:19041|Ensembl:ENSG00000123815|HPRD:10632 19 19q13.2 aarF domain containing kinase 4 protein-coding ADCK4 aarF domain containing kinase 4 O uncharacterized aarF domain-containing protein kinase 4 20121230 -9606 79935 CNTD2 - - HGNC:25805|Ensembl:ENSG00000105219|HPRD:08581|Vega:OTTHUMG00000160481 19 19q13.2 cyclin N-terminal domain containing 2 protein-coding CNTD2 cyclin N-terminal domain containing 2 O cyclin N-terminal domain-containing protein 2 20121230 -9606 79937 CNTNAP3 RP11-204I2.1 CASPR3|CNTNAP3A|RP11-138L21.1|RP11-290L7.1 HGNC:13834|MIM:610517|Ensembl:ENSG00000106714|HPRD:10842|Vega:OTTHUMG00000019954 9 9p13.1 contactin associated protein-like 3 protein-coding CNTNAP3 contactin associated protein-like 3 O cell recognition molecule Caspr3|contactin-associated protein-like 3 20121230 -9606 79939 SLC35E1 PSEC0038 - HGNC:20803|Ensembl:ENSG00000127526|HPRD:15373|Vega:OTTHUMG00000152575 19 19p13.11 solute carrier family 35, member E1 protein-coding SLC35E1 solute carrier family 35, member E1 O solute carrier family 35 member E1 20121230 -9606 79940 LINC00472 - C6orf155|dJ288M22.3 HGNC:21380|HPRD:12860 6 6q13 long intergenic non-protein coding RNA 472 miscRNA LINC00472 long intergenic non-protein coding RNA 472 O - 20121230 -9606 79943 ZNF696 - - HGNC:25872|Ensembl:ENSG00000185730|HPRD:08595|Vega:OTTHUMG00000164957 8 8q24.3 zinc finger protein 696 protein-coding ZNF696 zinc finger protein 696 O - 20121230 -9606 79944 L2HGDH - C14orf160 HGNC:20499|MIM:609584|Ensembl:ENSG00000087299|HPRD:12640|Vega:OTTHUMG00000140289 14 14q21.3 L-2-hydroxyglutarate dehydrogenase protein-coding L2HGDH L-2-hydroxyglutarate dehydrogenase O 2-hydroxyglutarate dehydrogenase|L-2-hydroxyglutarate dehydrogenase, mitochondrial|L-alpha-hydroxyglutarate dehydrogenase|alpha-hydroxyglutarate oxidoreductase|alpha-ketoglutarate reductase|duranin 20121230 -9606 79946 C10orf95 RP11-18I14.6 - HGNC:25880|Ensembl:ENSG00000120055|HPRD:10701|Vega:OTTHUMG00000018959 10 10q24.32 chromosome 10 open reading frame 95 protein-coding C10orf95 chromosome 10 open reading frame 95 O uncharacterized protein C10orf95 20121230 -9606 79947 DHDDS RP3-476K8.2 CIT|CPT|DS|HDS|RP59 HGNC:20603|MIM:608172|Ensembl:ENSG00000117682|HPRD:12183|Vega:OTTHUMG00000003554 1 1p36.11 dehydrodolichyl diphosphate synthase protein-coding DHDDS dehydrodolichyl diphosphate synthase O cis-IPTase|cis-isoprenyltransferase|cis-prenyl transferase|dedol-PP synthase|epididymis tissue protein Li 189m 20121230 -9606 79948 LPPR3 - LPR3|PRG-2|PRG2 MIM:610391|Ensembl:ENSG00000129951|HPRD:07755|Vega:OTTHUMG00000164523 19 19p13.3 lipid phosphate phosphatase-related protein type 3 protein-coding - - - PAP-2-like protein 2|plasticity-related gene 2 protein 20121230 -9606 79949 PLEKHS1 RP11-211N11.2 C10orf81|HEL185|bA211N11.2 HGNC:26285|Ensembl:ENSG00000148735|HPRD:12591|Vega:OTTHUMG00000019074 10 10q25.3 pleckstrin homology domain containing, family S member 1 protein-coding PLEKHS1 pleckstrin homology domain containing, family S member 1 O PH domain-containing family S member 1|PH domain-containing protein C10orf81|epididymis luminal protein 185|pleckstrin homology domain-containing family S member 1 20121230 -9606 79953 SYNDIG1 RP5-860P4.1 C20orf39|DSPC2|IFITMD5|TMEM90B HGNC:15885|MIM:614311|Ensembl:ENSG00000101463|HPRD:12766|Vega:OTTHUMG00000032104 20 20p11.21 synapse differentiation inducing 1 protein-coding SYNDIG1 synapse differentiation inducing 1 O dispanin subfamily C member 2|interferon induced transmembrane protein domain containing 5|synapse differentiation induced gene 1|synapse differentiation-inducing gene protein 1|transmembrane protein 90B 20121230 -9606 79954 NOL10 - PQBP5 HGNC:25862|Ensembl:ENSG00000115761|HPRD:07849|Vega:OTTHUMG00000119023 2 2p25.1 nucleolar protein 10 protein-coding NOL10 nucleolar protein 10 O H_NH0074G24.1|polyglutamine binding protein 5 20121230 -9606 79955 PDZD7 RP11-108L7.9 PDZK7 HGNC:26257|MIM:612971|Ensembl:ENSG00000186862|HPRD:15114|Vega:OTTHUMG00000018916 10 10q24.31 PDZ domain containing 7 protein-coding PDZD7 PDZ domain containing 7 O PDZ domain-containing protein 7 20121230 -9606 79956 ERMP1 RP11-207C16.6 FXNA|KIAA1815|bA207C16.3 HGNC:23703|MIM:611156|Ensembl:ENSG00000099219|HPRD:17227|Vega:OTTHUMG00000019508 9 9p24 endoplasmic reticulum metallopeptidase 1 protein-coding ERMP1 endoplasmic reticulum metallopeptidase 1 O Felix-ina|aminopeptidase Fxna|bA207C16.3 (novel protein similar to predicted yeast, plant and worm proteins) 20121230 -9606 79957 PAQR6 RP11-54H19.6 - HGNC:30132|MIM:614579|Ensembl:ENSG00000160781|HPRD:17820|Vega:OTTHUMG00000017490 1 1q22 progestin and adipoQ receptor family member VI protein-coding PAQR6 progestin and adipoQ receptor family member VI O progestin and adipoQ receptor family member 6 20121230 -9606 79958 DENND1C - FAM31C HGNC:26225|MIM:613634|Ensembl:ENSG00000205744|HPRD:13304|Vega:OTTHUMG00000180853 19 19p13.3 DENN/MADD domain containing 1C protein-coding DENND1C DENN/MADD domain containing 1C O DENN domain-containing protein 1C|connecdenn 3|family with sequence similarity 31, member C 20121230 -9606 79959 CEP76 - C18orf9|HsT1705 HGNC:25727|Ensembl:ENSG00000101624|HPRD:12694|Vega:OTTHUMG00000131701 18 18p11.21 centrosomal protein 76kDa protein-coding CEP76 centrosomal protein 76kDa O centrosomal protein of 76 kDa 20121230 -9606 79960 PHF17 - JADE1 HGNC:30027|MIM:610514|Ensembl:ENSG00000077684|HPRD:10151|Vega:OTTHUMG00000161176 4 4q26-q27 PHD finger protein 17 protein-coding PHF17 PHD finger protein 17 O PHD protein Jade-1|gene for apoptosis and differentiation in epithelia|protein Jade-1 20121230 -9606 79961 DENND2D RP5-1180E21.2 - HGNC:26192|Ensembl:ENSG00000162777|HPRD:08655|Vega:OTTHUMG00000012356 1 1p13.3 DENN/MADD domain containing 2D protein-coding DENND2D DENN/MADD domain containing 2D O DENN domain-containing protein 2D|RP5-1180E21.2 20121230 -9606 79962 DNAJC22 - wus HGNC:25802|Ensembl:ENSG00000178401|HPRD:08580|Vega:OTTHUMG00000169487 12 12q13.12 DnaJ (Hsp40) homolog, subfamily C, member 22 protein-coding DNAJC22 DnaJ (Hsp40) homolog, subfamily C, member 22 O dnaJ homolog subfamily C member 22|wurst homolog 20121230 -9606 79963 ABCA11P - ABCA11|EST1133530 HGNC:31|HPRD:08597 4 4p16.3 ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene pseudo ABCA11P ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene O - 20121230 -9606 79966 SCD5 - ACOD4|FADS4|HSCD5|SCD2|SCD4 HGNC:21088|MIM:608370|Ensembl:ENSG00000145284|HPRD:09756|Vega:OTTHUMG00000130293 4 4q21.22 stearoyl-CoA desaturase 5 protein-coding SCD5 stearoyl-CoA desaturase 5 O acyl-CoA-desaturase 4|stearoyl-CoA 9-desaturase|stearoyl-CoA desaturase 4 20121230 -9606 79968 WDR76 - CDW14 HGNC:25773|Ensembl:ENSG00000092470|HPRD:07804|Vega:OTTHUMG00000060143 15 15q15.3 WD repeat domain 76 protein-coding WDR76 WD repeat domain 76 O WD repeat-containing protein 76 20121230 -9606 79969 ATAT1 DADB-129D20.8 C6orf134|MEC17|Nbla00487|TAT HGNC:21186|Ensembl:ENSG00000137343|HPRD:12850|Vega:OTTHUMG00000031219 6 6p21.33 alpha tubulin acetyltransferase 1 protein-coding ATAT1 alpha tubulin acetyltransferase 1 O acetyltransferase mec-17 homolog|alpha-TAT|alpha-tubulin N-acetyltransferase 20121230 -9606 79970 ZNF767 UNQ5808 - HGNC:21884|HPRD:07791 7 7q36.1 zinc finger family member 767 pseudo ZNF767 zinc finger family member 767 O - 20121230 -9606 79971 WLS RP11-518D3.2 C1orf139|EVI|GPR177|MRP HGNC:30238|MIM:611514|Ensembl:ENSG00000116729|HPRD:10980|Vega:OTTHUMG00000009153 1 1p31.3 wntless homolog (Drosophila) protein-coding WLS wntless homolog (Drosophila) O G protein-coupled receptor 177|integral membrane protein GPR177|protein evenness interrupted homolog|protein wntless homolog|putative NF-kappa-B-activating protein 373|putative NFkB activating protein 373 20121230 -9606 79973 ZNF442 - - HGNC:20877|Ensembl:ENSG00000198342|HPRD:15795|Vega:OTTHUMG00000156411 19 19p13.2 zinc finger protein 442 protein-coding ZNF442 zinc finger protein 442 O - 20121230 -9606 79974 CPED1 UNQ9432/PRO34713 C7orf58 HGNC:26159|Ensembl:ENSG00000106034|HPRD:08647|Vega:OTTHUMG00000156982 7 7q31.31 cadherin-like and PC-esterase domain containing 1 protein-coding CPED1 cadherin-like and PC-esterase domain containing 1 O cadherin-like and PC-esterase domain-containing protein 1 20121230 -9606 79977 GRHL2 - BOM|DFNA28|TFCP2L3 HGNC:2799|MIM:608576|Ensembl:ENSG00000083307|HPRD:10545|Vega:OTTHUMG00000149915 8 8q22.3 grainyhead-like 2 (Drosophila) protein-coding GRHL2 grainyhead-like 2 (Drosophila) O brother of mammalian grainyhead|grainyhead-like protein 2 homolog|transcription factor CP2-like 3 20121230 -9606 79979 TRMT2B RP3-341D10.3 CXorf34|dJ341D10.3 HGNC:25748|Ensembl:ENSG00000188917|HPRD:06520|Vega:OTTHUMG00000022017 X Xq22.1 tRNA methyltransferase 2 homolog B (S. cerevisiae) protein-coding TRMT2B tRNA methyltransferase 2 homolog B (S. cerevisiae) O TRM2 homolog|TRM2 tRNA methyltransferase 2 homolog B|tRNA (uracil(54)-C(5))-methyltransferase homolog|tRNA (uracil-5-)-methyltransferase homolog 20121230 -9606 79980 DSN1 RP3-469A13.1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 HGNC:16165|MIM:609175|Ensembl:ENSG00000149636|HPRD:16455|Vega:OTTHUMG00000032396 20 20q11.23 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) protein-coding DSN1 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) O kinetochore null 3 homolog|kinetochore-associated protein DSN1 homolog 20121230 -9606 79981 FRMD1 RP11-164L23.1 bA164L23.1 HGNC:21240|Ensembl:ENSG00000153303|HPRD:10997|Vega:OTTHUMG00000016037 6 6q27 FERM domain containing 1 protein-coding FRMD1 FERM domain containing 1 O FERM domain-containing protein 1 20121230 -9606 79982 DNAJB14 UNQ9427/PRO34683 EGNR9427|PRO34683 HGNC:25881|Ensembl:ENSG00000164031|HPRD:07013|Vega:OTTHUMG00000131049 4 4q23 DnaJ (Hsp40) homolog, subfamily B, member 14 protein-coding DNAJB14 DnaJ (Hsp40) homolog, subfamily B, member 14 O dnaJ homolog subfamily B member 14 20121230 -9606 79983 POF1B RP1-75N13.2 POF|POF2B HGNC:13711|MIM:300603|Ensembl:ENSG00000124429|HPRD:06679|Vega:OTTHUMG00000021934 X Xq21.2 premature ovarian failure, 1B protein-coding POF1B premature ovarian failure, 1B O premature ovarian failure protein 1B|protein POF1B 20121230 -9606 79986 ZNF702P - ZNF702 HGNC:25775|HPRD:07806 19 19q13.41 zinc finger protein 702, pseudogene pseudo ZNF702P zinc finger protein 702, pseudogene O - 20121230 -9606 79987 SVEP1 - C9orf13|CCP22|POLYDOM|SEL-OB|SELOB HGNC:15985|MIM:611691|Ensembl:ENSG00000165124|Vega:OTTHUMG00000020482 9 9q32 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 O CCP module-containing protein 22|selectin-like osteoblast-derived protein|selectin-like protein|serologically defined breast cancer antigen NY-BR-38|sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 20121230 -9606 79989 TTC26 - DYF13|dyf-13 HGNC:21882|Ensembl:ENSG00000105948|HPRD:07776|Vega:OTTHUMG00000157472 7 7q34 tetratricopeptide repeat domain 26 protein-coding TTC26 tetratricopeptide repeat domain 26 O TPR repeat protein 26|tetratricopeptide repeat protein 26 20121230 -9606 79990 PLEKHH3 - - HGNC:26105|Ensembl:ENSG00000068137|HPRD:13381|Vega:OTTHUMG00000180641 17 17q21.2 pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 protein-coding PLEKHH3 pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 O PH domain-containing family H member 3|pleckstrin homology domain-containing family H member 3 20121230 -9606 79991 OBFC1 - AAF-44|AAF44|RP11-541N10.2|RPA-32|STN1|bA541N10.2 HGNC:26200|MIM:613128|Ensembl:ENSG00000107960|HPRD:14872|Vega:OTTHUMG00000018996 10 10q24.33 oligonucleotide/oligosaccharide-binding fold containing 1 protein-coding OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 O CST complex subunit STN1|alpha accessory factor 44|oligonucleotide/oligosaccharide-binding fold-containing protein 1|replication protein A 32 kDa subunit|suppressor of cdc thirteen homolog 20121230 -9606 79992 AGPAT4-IT1 - C6orf59|NCRNA00241 HGNC:20988|HPRD:12889 6 6q26 AGPAT4 intronic transcript 1 (non-protein coding) miscRNA AGPAT4-IT1 AGPAT4 intronic transcript 1 (non-protein coding) O - 20121230 -9606 79993 ELOVL7 - - HGNC:26292|MIM:614451|Ensembl:ENSG00000164181|HPRD:18700|Vega:OTTHUMG00000162254 5 5q12.1 ELOVL fatty acid elongase 7 protein-coding ELOVL7 ELOVL fatty acid elongase 7 O 3-keto acyl-CoA synthase ELOVL7|ELOVL FA elongase 7|ELOVL family member 7, elongation of long chain fatty acids|elongation of very long chain fatty acids protein 7|very-long-chain 3-oxoacyl-CoA synthase 7 20121230 -9606 79998 ANKRD53 - - HGNC:25691|Ensembl:ENSG00000144031|HPRD:07762|Vega:OTTHUMG00000129712 2 2p13.3 ankyrin repeat domain 53 protein-coding ANKRD53 ankyrin repeat domain 53 O ankyrin repeat domain-containing protein 53 20121230 -9606 79999 LOC79999 - - - 17 17p11.2 uncharacterized LOC79999 unknown - - - - 20121230 -9606 80000 GREB1L - C18orf6|KIAA1772 HGNC:31042|Ensembl:ENSG00000141449|HPRD:11161|Vega:OTTHUMG00000178892 18 18q11.2 growth regulation by estrogen in breast cancer-like protein-coding GREB1L growth regulation by estrogen in breast cancer-like O GREB1-like protein 20121230 -9606 80003 PCNXL2 - - HGNC:8736|Ensembl:ENSG00000135749|HPRD:15108|Vega:OTTHUMG00000037824 1 1q42.2 pecanex-like 2 (Drosophila) protein-coding PCNXL2 pecanex-like 2 (Drosophila) O pecanex-like protein 2 20121230 -9606 80004 ESRP2 PP7059 RBM35B HGNC:26152|MIM:612960|Ensembl:ENSG00000103067|HPRD:07971|Vega:OTTHUMG00000137557 16 16q22.1 epithelial splicing regulatory protein 2 protein-coding ESRP2 epithelial splicing regulatory protein 2 O RNA binding motif protein 35A|RNA binding motif protein 35B|RNA-binding motif protein 35B|RNA-binding protein 35B 20121230 -9606 80005 DOCK5 - - HGNC:23476|Ensembl:ENSG00000147459|HPRD:09925|Vega:OTTHUMG00000131991 8 8p21.2 dedicator of cytokinesis 5 protein-coding DOCK5 dedicator of cytokinesis 5 O dedicator of cytokinesis protein 5 20121230 -9606 80006 C5orf44 - - HGNC:25828|Ensembl:ENSG00000113597|HPRD:07832|Vega:OTTHUMG00000163649 5 5q12.3 chromosome 5 open reading frame 44 protein-coding C5orf44 chromosome 5 open reading frame 44 O UPF0533 protein C5orf44 20121230 -9606 80007 C10orf88 - - HGNC:25822|Ensembl:ENSG00000119965|HPRD:18531|Vega:OTTHUMG00000019190 10 10q26.13 chromosome 10 open reading frame 88 protein-coding C10orf88 chromosome 10 open reading frame 88 O uncharacterized protein C10orf88 20121230 -9606 80008 TMEM156 - - HGNC:26260|Ensembl:ENSG00000121895|HPRD:08022|Vega:OTTHUMG00000128582 4 4p14 transmembrane protein 156 protein-coding TMEM156 transmembrane protein 156 O - 20121230 -9606 80010 RMI1 - BLAP75|C9orf76|FAAP75|RP11-346I8.1 HGNC:25764|MIM:610404|Ensembl:ENSG00000178966|HPRD:09867|Vega:OTTHUMG00000020113 9 9q21.32 RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) protein-coding RMI1 RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) O BLM-associated polypeptide, 75 kDa|BLM-associated protein 75 kDa|homolog of yeast RecQ-mediated genome instability 1 (RMI1)|recQ-mediated genome instability protein 1 20121230 -9606 80011 FAM192A CDA10 C16orf94|CDA018|NIP30 HGNC:29856|Ensembl:ENSG00000172775|HPRD:11389|Vega:OTTHUMG00000176660 16 16q13 family with sequence similarity 192, member A protein-coding FAM192A family with sequence similarity 192, member A O NEFA-interacting nuclear protein NIP30|protein FAM192A 20121230 -9606 80012 PHC3 - EDR3|HPH3 HGNC:15682|Ensembl:ENSG00000173889|HPRD:10149|Vega:OTTHUMG00000158777 3 3q26.2 polyhomeotic homolog 3 (Drosophila) protein-coding PHC3 polyhomeotic homolog 3 (Drosophila) O early development regulator 3|early development regulatory protein 3|homolog of polyhomeotic 3|polyhomeotic like 3|polyhomeotic-like protein 3 20121230 -9606 80013 FAM188A MSTP126 C10orf97|CARP|DERP5|MST126|RP11-394I23.1|my042 HGNC:23578|MIM:611649|Ensembl:ENSG00000148481|HPRD:10702|Vega:OTTHUMG00000017734 10 10p13 family with sequence similarity 188, member A protein-coding FAM188A family with sequence similarity 188, member A O CARD-containing protein|caspase recruitment domain containing pro-apoptotic protein|dermal papilla-derived protein 5|protein FAM188A 20121230 -9606 80014 WWC2 - BOMB HGNC:24148|Ensembl:ENSG00000151718|HPRD:12529|Vega:OTTHUMG00000150685 4 4q35.1 WW and C2 domain containing 2 protein-coding WWC2 WW and C2 domain containing 2 O BH-3-only member B|BH3-only member B protein|WW domain-containing protein 2|WW, C2 and coiled-coil domain containing 2|protein WWC2 20121230 -9606 80017 C14orf159 UNQ2439/PRO5000 - HGNC:20498|Ensembl:ENSG00000133943|HPRD:16612|Vega:OTTHUMG00000164980 14 14q32.11 chromosome 14 open reading frame 159 protein-coding C14orf159 chromosome 14 open reading frame 159 O UPF0317 protein C14orf159, mitochondrial 20121230 -9606 80018 NAA25 - C12orf30|MDM20|NAP1 HGNC:25783|MIM:612755|Ensembl:ENSG00000111300|HPRD:08578|Vega:OTTHUMG00000169638 12 12q24.13 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit O N-alpha-acetyltransferase 25, NatB auxiliary subunit|N-terminal acetyltransferase B complex subunit NAA25|mitochondrial distribution and morphology 20|natB complex subunit MDM20 20121230 -9606 80019 UBTD1 - - HGNC:25683|Ensembl:ENSG00000165886|HPRD:08568|Vega:OTTHUMG00000018856 10 10q24.2 ubiquitin domain containing 1 protein-coding UBTD1 ubiquitin domain containing 1 O ubiquitin domain-containing protein 1 20121230 -9606 80020 FOXRED2 RP5-1119A7.4 ERFAD HGNC:26264|MIM:613777|Ensembl:ENSG00000100350|HPRD:08666|Vega:OTTHUMG00000044614 22 22q12.3 FAD-dependent oxidoreductase domain containing 2 protein-coding FOXRED2 FAD-dependent oxidoreductase domain containing 2 O FAD-dependent oxidoreductase domain-containing protein 2|endoplasmic reticulum flavoprotein associated with degradation 20121230 -9606 80021 TMEM62 - - HGNC:26269|Ensembl:ENSG00000137842|HPRD:08669|Vega:OTTHUMG00000176485 15 15q15.2 transmembrane protein 62 protein-coding TMEM62 transmembrane protein 62 O - 20121230 -9606 80022 MYO15B - MYO15BP HGNC:14083 17 17q25.1 myosin XVB pseudogene pseudo MYO15B myosin XVB pseudogene O myosin XVB 20121230 -9606 80023 NRSN2 RP5-1103G7.8 C20orf98|dJ1103G7.6 HGNC:16229|MIM:610666|Ensembl:ENSG00000125841|HPRD:12791|Vega:OTTHUMG00000031628 20 20p13 neurensin 2 protein-coding NRSN2 neurensin 2 O neurensin-2 20121230 -9606 80024 SLC24A6 - NCKX6|NCLX HGNC:26175|MIM:609841|Ensembl:ENSG00000089060|HPRD:15354|Vega:OTTHUMG00000169566 12 12q24.13 solute carrier family 24 (sodium/lithium/calcium exchanger), member 6 protein-coding SLC24A6 solute carrier family 24 (sodium/lithium/calcium exchanger), member 6 O Na(+)/K(+)/Ca(2+)-exchange protein 6|sodium/potassium/calcium exchanger 6|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6|solute carrier family 24 member 6 20121230 -9606 80025 PANK2 RP4-681N20.1 C20orf48|HARP|HSS|NBIA1|PKAN HGNC:15894|MIM:606157|Ensembl:ENSG00000125779|Vega:OTTHUMG00000031768 20 20p13 pantothenate kinase 2 protein-coding PANK2 pantothenate kinase 2 O Hallervorden-Spatz syndrome|pantothenate kinase 2, mitochondrial|pantothenic acid kinase 2 20121230 -9606 80028 FBXL18 - Fbl18 HGNC:21874|MIM:609084|Ensembl:ENSG00000155034|HPRD:07753|Vega:OTTHUMG00000151832 7 7p22.2 F-box and leucine-rich repeat protein 18 protein-coding FBXL18 F-box and leucine-rich repeat protein 18 O F-box/LRR-repeat protein 18 20121230 -9606 80031 SEMA6D - - HGNC:16770|MIM:609295|Ensembl:ENSG00000137872|HPRD:10221|Vega:OTTHUMG00000172110 15 15q21.1 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding SEMA6D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D O semaphorin-6D 20121230 -9606 80032 ZNF556 - - HGNC:25669|Ensembl:ENSG00000172000|HPRD:15839|Vega:OTTHUMG00000180501 19 19p13.3 zinc finger protein 556 protein-coding ZNF556 zinc finger protein 556 O - 20121230 -9606 80034 CSRNP3 - FAM130A2|PPP1R73|TAIP-2|TAIP2 HGNC:30729|Ensembl:ENSG00000178662|HPRD:18144|Vega:OTTHUMG00000132145 2 2q24.3 cysteine-serine-rich nuclear protein 3 protein-coding CSRNP3 cysteine-serine-rich nuclear protein 3 O CSRNP-3|TGF beta induced apotosis protein 2|TGF-beta induced apoptosis protein 2|TGF-beta-induced apoptosis protein 2|cysteine/serine-rich nuclear protein 3|family with sequence similarity 130, member A2|protein phosphatase 1, regulatory subunit 73 20121230 -9606 80035 ANP32A-IT1 - C15orf28|HsT18971|NCRNA00321 HGNC:25672 15 15q23 ANP32A intronic transcript 1 (non-protein coding) miscRNA ANP32A-IT1 ANP32A intronic transcript 1 (non-protein coding) O - 20121230 -9606 80036 TRPM3 RP11-141J10.3 GON-2|LTRPC3|MLSN2 HGNC:17992|MIM:608961|Ensembl:ENSG00000083067|HPRD:10605|Vega:OTTHUMG00000019997 9 9q21.12 transient receptor potential cation channel, subfamily M, member 3 protein-coding TRPM3 transient receptor potential cation channel, subfamily M, member 3 O LTrpC-3|long transient receptor potential channel 3|melastatin 2|melastatin-2|transient receptor potential cation channel subfamily M member 3 20121230 -9606 80039 FAM106A - - HGNC:25682|HPRD:07759 17 17p11.2 family with sequence similarity 106, member A miscRNA FAM106A family with sequence similarity 106, member A O - 20121230 -9606 80045 GPR157 RP5-963K15.2 - HGNC:23687|Ensembl:ENSG00000180758|HPRD:17068|Vega:OTTHUMG00000001758 1 1p36.23 G protein-coupled receptor 157 protein-coding GPR157 G protein-coupled receptor 157 O probable G-protein coupled receptor 157 20121230 -9606 80052 RPS2P45 - RPS2_21_1492 HGNC:25709|HPRD:07765 16 16q22.1 ribosomal protein S2 pseudogene 45 pseudo RPS2P45 ribosomal protein S2 pseudogene 45 O - 20121230 -9606 80054 CEBPA-AS1 - - HGNC:25710|HPRD:07766 19 19q13.11 CEBPA antisense RNA 1 (head to head) miscRNA CEBPA-AS1 CEBPA antisense RNA 1 (head to head) O - 20121230 -9606 80055 PGAP1 UNQ3024/PRO9822 Bst1|ISPD3024 HGNC:25712|MIM:611655|Ensembl:ENSG00000197121|HPRD:10147|Vega:OTTHUMG00000132743 2 2q33.1 post-GPI attachment to proteins 1 protein-coding PGAP1 post-GPI attachment to proteins 1 O GPI deacylase|GPI inositol-deacylase|hPGAP1|post-GPI attachment to proteins factor 1 20121230 -9606 80059 LRRTM4 UNQ3075/PRO9907 - HGNC:19411|MIM:610870|Ensembl:ENSG00000176204|HPRD:11288|Vega:OTTHUMG00000152842 2 2p12 leucine rich repeat transmembrane neuronal 4 protein-coding LRRTM4 leucine rich repeat transmembrane neuronal 4 O leucine-rich repeat transmembrane neuronal 4 protein|leucine-rich repeat transmembrane neuronal protein 4 20121230 -9606 80060 GNL3LP1 - GNL3LP HGNC:25733|HPRD:07781 5 5q12.1 guanine nucleotide binding protein-like 3 (nucleolar)-like pseudogene 1 pseudo GNL3LP1 guanine nucleotide binding protein-like 3 (nucleolar)-like pseudogene 1 O - 20121230 -9606 80063 ATF7IP2 - MCAF2 HGNC:20397|MIM:613645|Ensembl:ENSG00000166669|HPRD:16517|Vega:OTTHUMG00000129749 16 16p13.13 activating transcription factor 7 interacting protein 2 protein-coding ATF7IP2 activating transcription factor 7 interacting protein 2 O ATF7-interacting protein 2|MBD1-containing chromatin associated factor 2|MBD1-containing chromatin-associated factor 2|activating transcription factor 7-interacting protein 2 20121230 -9606 80067 DCAF17 - C2orf37 HGNC:25784|MIM:612515|Ensembl:ENSG00000115827|HPRD:08579|Vega:OTTHUMG00000132259 2 2q31.1 DDB1 and CUL4 associated factor 17 protein-coding DCAF17 DDB1 and CUL4 associated factor 17 O DDB1- and CUL4-associated factor 17 20121230 -9606 80069 LINC00574 - C6orf208|RP1-266L20.3|dJ182D15.1 HGNC:21598|HPRD:12876 6 6q27 long intergenic non-protein coding RNA 574 miscRNA LINC00574 long intergenic non-protein coding RNA 574 O - 20121230 -9606 80070 ADAMTS20 - ADAM-TS20|ADAMTS-20|GON-1 HGNC:17178|MIM:611681|Ensembl:ENSG00000173157|Vega:OTTHUMG00000169353 12 12q12 ADAM metallopeptidase with thrombospondin type 1 motif, 20 protein-coding ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 O A disintegrin and metalloproteinase with thrombospondin motifs 20|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 20 20121230 -9606 80071 CCDC15 - - HGNC:25798|Ensembl:ENSG00000149548|HPRD:07820|Vega:OTTHUMG00000165940 11 11q24.2 coiled-coil domain containing 15 protein-coding CCDC15 coiled-coil domain containing 15 O coiled-coil domain-containing protein 15 20121230 -9606 80072 HEXA-AS1 - C15orf34 HGNC:25810 15 15q23 HEXA antisense RNA 1 miscRNA HEXA-AS1 HEXA antisense RNA 1 O - 20121230 -9606 80078 FLJ13744 - - - 6 6q14 uncharacterized FLJ13744 other - - - - 20120710 -9606 80086 TUBA4B - TUBA4 HGNC:18637|HPRD:18242 2 2q35 tubulin, alpha 4b (pseudogene) pseudo TUBA4B tubulin, alpha 4b (pseudogene) O putative tubulin-like protein alpha-4B 20121230 -9606 80094 FLJ14107 - - HPRD:07850 8 8p21.3 uncharacterized LOC80094 miscRNA - - - - 20121230 -9606 80095 ZNF606 - ZNF328 HGNC:25879|MIM:613905|Ensembl:ENSG00000166704|HPRD:15871|Vega:OTTHUMG00000169804 19 19q13.4 zinc finger protein 606 protein-coding ZNF606 zinc finger protein 606 O zinc finger protein 328 20121230 -9606 80097 MZT2B - FAM128B|MOZART2B HGNC:25886|MIM:613450|Ensembl:ENSG00000152082|HPRD:07857|Vega:OTTHUMG00000131625 2 2q21.1 mitotic spindle organizing protein 2B protein-coding MZT2B mitotic spindle organizing protein 2B O family with sequence similarity 128, member B|mitotic-spindle organizing protein 2B|mitotic-spindle organizing protein associated with a ring of gamma-tubulin 2B 20121230 -9606 80099 C7orf69 tcag7.708 - HGNC:21911|Ensembl:ENSG00000136275|HPRD:08635|Vega:OTTHUMG00000155648 7 7p12.3 chromosome 7 open reading frame 69 protein-coding C7orf69 chromosome 7 open reading frame 69 O uncharacterized protein C7orf69 20121230 -9606 80108 ZFP2 - ZNF751 HGNC:26138|Ensembl:ENSG00000198939|HPRD:08639|Vega:OTTHUMG00000130885 5 5q35.3 ZFP2 zinc finger protein protein-coding ZFP2 ZFP2 zinc finger protein O zfp-2|zinc finger protein 2 homolog|zinc finger protein 751 20121230 -9606 80110 ZNF614 - - HGNC:24722|Ensembl:ENSG00000142556|HPRD:15874 19 19q13.41 zinc finger protein 614 protein-coding ZNF614 zinc finger protein 614 O - 20121230 -9606 80111 C3orf36 - - HGNC:26170|Ensembl:ENSG00000221972|HPRD:07981 3 3q22.1 chromosome 3 open reading frame 36 protein-coding C3orf36 chromosome 3 open reading frame 36 O uncharacterized protein C3orf36 20121230 -9606 80114 BICC1 - BICC|CYSRD HGNC:19351|MIM:614295|Ensembl:ENSG00000122870|Vega:OTTHUMG00000018271 10 10q21.1 bicaudal C homolog 1 (Drosophila) protein-coding BICC1 bicaudal C homolog 1 (Drosophila) O bic-C|protein bicaudal C homolog 1 20121230 -9606 80115 BAIAP2L2 RP5-1039K5.15-002 - HGNC:26203|Ensembl:ENSG00000128298|HPRD:07997|Vega:OTTHUMG00000151197 22 22q13.1 BAI1-associated protein 2-like 2 protein-coding BAIAP2L2 BAI1-associated protein 2-like 2 O BAI1-associated protein 2-like protein 2|brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 2|pinkbar|planar intestinal- and kidney-specific BAR domain protein 20121230 -9606 80117 ARL14 - ARF7 HGNC:22974|MIM:614439|Ensembl:ENSG00000179674|HPRD:07998|Vega:OTTHUMG00000159031 3 3q25.33 ADP-ribosylation factor-like 14 protein-coding ARL14 ADP-ribosylation factor-like 14 O ADP-ribosylation factor 7|ADP-ribosylation factor-like protein 14 20121230 -9606 80119 PIF1 - C15orf20|PIF HGNC:26220|MIM:610953|Ensembl:ENSG00000140451|HPRD:10715|Vega:OTTHUMG00000132974 15 15q22.31 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) protein-coding PIF1 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) O ATP-dependent DNA helicase PIF1|DNA helicase PIF1|DNA helicase homolog PIF1|PIF1 DNA helicase|PIF1/RRM3 DNA helicase-like protein|petite integration frequency 1 20121230 -9606 80122 MAP3K19 - RCK|YSK4 HGNC:26249|Ensembl:ENSG00000176601|HPRD:08016|Vega:OTTHUMG00000074083 2 2q21.3 mitogen-activated protein kinase kinase kinase 19 protein-coding MAP3K19 mitogen-activated protein kinase kinase kinase 19 O SPS1/STE20-related protein kinase YSK4|YSK4 Sps1/Ste20-related kinase homolog|regulated in COPD kinase|regulated in COPD, protein kinase|yeast Sps1/Ste20-related kinase 4 20121230 -9606 80124 VCPIP1 - DUBA3|VCIP135 HGNC:30897|MIM:611745|Ensembl:ENSG00000175073|HPRD:15645|Vega:OTTHUMG00000164560 8 8q13 valosin containing protein (p97)/p47 complex interacting protein 1 protein-coding VCPIP1 valosin containing protein (p97)/p47 complex interacting protein 1 O VCP/p47 complex-interacting 135-kDa protein|deubiquitinating protein VCIP135|valosin-containing protein (p97)/p47 complex-interacting protein p135|valosin-containing protein p97/p47 complex-interacting protein 1|valosin-containing protein p97/p47 complex-interacting protein p135 20121230 -9606 80125 CCDC33 - CT61 HGNC:26552|Ensembl:ENSG00000140481|HPRD:09959|Vega:OTTHUMG00000172621 15 15q24.1 coiled-coil domain containing 33 protein-coding CCDC33 coiled-coil domain containing 33 O cancer/testis antigen 61|coiled-coil domain-containing protein 33 20121230 -9606 80127 CCDC176 - C14orf45 HGNC:19855|Ensembl:ENSG00000119636|HPRD:12650|Vega:OTTHUMG00000171202 14 14q24.3 coiled-coil domain containing 176 protein-coding CCDC176 coiled-coil domain containing 176 O uncharacterized protein C14orf45 20121230 -9606 80128 TRIM46 RP11-263K19.1 GENEY|TRIFIC HGNC:19019|MIM:600986|Ensembl:ENSG00000163462|HPRD:15563|Vega:OTTHUMG00000035680 1 1q22 tripartite motif containing 46 protein-coding TRIM46 tripartite motif containing 46 O gene Y protein|tripartite motif-containing protein 46|tripartite, fibronectin type-III and C-terminal SPRY motif protein 20121230 -9606 80129 CCDC170 - C6orf97|bA282P11.1 HGNC:21177|Ensembl:ENSG00000120262|HPRD:10797|Vega:OTTHUMG00000015839 6 6q25.1 coiled-coil domain containing 170 protein-coding CCDC170 coiled-coil domain containing 170 O coiled-coil domain-containing protein 170 20121230 -9606 80131 LRRC8E - - HGNC:26272|MIM:612891|Ensembl:ENSG00000171017|HPRD:08670 19 19p13.2 leucine rich repeat containing 8 family, member E protein-coding LRRC8E leucine rich repeat containing 8 family, member E O leucine-rich repeat-containing protein 8E 20121230 -9606 80133 MROH9 RP5-1092L12.1 ARMC11|C1orf129 HGNC:26287|Ensembl:ENSG00000117501|HPRD:08672|Vega:OTTHUMG00000041456 1 1q24.3 maestro heat-like repeat family member 9 protein-coding MROH9 maestro heat-like repeat family member 9 O armadillo repeat containing 11|uncharacterized protein C1orf129 20121230 -9606 80135 RPF1 - BXDC5|RP11-118B23.1 HGNC:30350|Ensembl:ENSG00000117133|HPRD:15272|Vega:OTTHUMG00000009857 1 1p22.3 ribosome production factor 1 homolog (S. cerevisiae) protein-coding RPF1 ribosome production factor 1 homolog (S. cerevisiae) O 2310066N05Rik|RNA processing factor 1 (RPF1)|brix domain containing 5|brix domain-containing protein 5|ribosome biogenesis protein RPF1|ribosome production factor 1 20121230 -9606 80139 ZNF703 - ZEPPO1|ZNF503L|ZPO1 HGNC:25883|Ensembl:ENSG00000183779|HPRD:07855|Vega:OTTHUMG00000164001 8 8p11.23 zinc finger protein 703 protein-coding ZNF703 zinc finger protein 703 O zinc finger elbow-related proline domain protein 1 20121230 -9606 80142 PTGES2 RP11-395P17.2 C9orf15|GBF-1|GBF1|PGES2|mPGES-2 HGNC:17822|MIM:608152|Ensembl:ENSG00000148334|HPRD:07458|Vega:OTTHUMG00000020730 9 9q34.11 prostaglandin E synthase 2 protein-coding PTGES2 prostaglandin E synthase 2 O GATE-binding factor 1|gamma-interferon-activated transcriptional element-binding factor 1|membrane-associated prostaglandin E synthase 2|microsomal prostaglandin E synthase-2 20121230 -9606 80143 SIKE1 RP5-1000E10.4 SIKE HGNC:26119|MIM:611656|Ensembl:ENSG00000052723|HPRD:07958|Vega:OTTHUMG00000012061 1 1p13.2 suppressor of IKBKE 1 protein-coding SIKE1 suppressor of IKBKE 1 O suppressor of IKK epsilon|suppressor of IKK-epsilon 20121230 -9606 80144 FRAS1 - - HGNC:19185|MIM:607830|Ensembl:ENSG00000138759|HPRD:06382|Vega:OTTHUMG00000160856 4 4q21.21 Fraser syndrome 1 protein-coding FRAS1 Fraser syndrome 1 O extracellular matrix protein FRAS1 20121230 -9606 80145 THOC7 - NIF3L1BP1|fSAP24 HGNC:29874|MIM:611965|Ensembl:ENSG00000163634|HPRD:17632|Vega:OTTHUMG00000158767 3 3p14.1 THO complex 7 homolog (Drosophila) protein-coding THOC7 THO complex 7 homolog (Drosophila) O NIF3L1-binding protein 1|Ngg1 interacting factor 3 like 1 binding protein 1|THO complex subunit 7 homolog|functional spliceosome-associated protein 24|hTREX30|ngg1-interacting factor 3-like protein 1-binding protein 1 20121230 -9606 80146 UXS1 UNQ2538/PRO6079 SDR6E1|UGD HGNC:17729|MIM:609749|Ensembl:ENSG00000115652|HPRD:15642|Vega:OTTHUMG00000153150 2 2q12.2 UDP-glucuronate decarboxylase 1 protein-coding UXS1 UDP-glucuronate decarboxylase 1 O UDP-glucuronic acid decarboxylase 1|UXS-1|short chain dehydrogenase/reductase family 6E, member 12 20121230 -9606 80148 PQLC1 - - HGNC:26188|Ensembl:ENSG00000122490|HPRD:11454|Vega:OTTHUMG00000132921 18 18q23 PQ loop repeat containing 1 protein-coding PQLC1 PQ loop repeat containing 1 O PQ-loop repeat-containing protein 1 20121230 -9606 80149 ZC3H12A - MCPIP|MCPIP1|RP3-423B22.1|dJ423B22.1 HGNC:26259|MIM:610562|Ensembl:ENSG00000163874|HPRD:08021|Vega:OTTHUMG00000004221 1 1p34.3 zinc finger CCCH-type containing 12A protein-coding ZC3H12A zinc finger CCCH-type containing 12A O MCP induced protein 1|MCP-1 treatment-induced protein|MCP-induced protein 1|ribonuclease ZC3H12A|zinc finger CCCH domain-containing protein 12A 20121230 -9606 80150 ASRGL1 - ALP|ALP1|CRASH HGNC:16448|MIM:609212|Ensembl:ENSG00000162174|HPRD:07006|Vega:OTTHUMG00000167513 11 11q12.3 asparaginase like 1 protein-coding ASRGL1 asparaginase like 1 O L-asparaginase|L-asparagine amidohydrolase|asparaginase-like 1 protein|asparaginase-like protein 1 20121230 -9606 80152 CENPT - C16orf56|CENP-T HGNC:25787|MIM:611510|Ensembl:ENSG00000102901|Vega:OTTHUMG00000173071 16 16q22.1 centromere protein T protein-coding CENPT centromere protein T O interphase centromere complex protein 22 20121230 -9606 80153 EDC3 PP844 LSM16|YJDC|YJEFN2 HGNC:26114|MIM:609842|Ensembl:ENSG00000179151|HPRD:07954|Vega:OTTHUMG00000142815 15 15q24.1 enhancer of mRNA decapping 3 homolog (S. cerevisiae) protein-coding EDC3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) O LSM16 homolog (EDC3, S. cerevisiae)|enhancer of mRNA-decapping protein 3|hYjeF_N2|hYjeF_N2-15q23|yjeF N-terminal domain-containing protein 2|yjeF domain containing|yjeF domain-containing protein 1|yjeF_N2 20121230 -9606 80154 AGSK1 - - HPRD:08007 15 15q25.2 golgin subfamily A member 2-like miscRNA - - - - 20121209 -9606 80155 NAA15 - Ga19|NARG1|NATH|TBDN100 HGNC:30782|MIM:608000|Ensembl:ENSG00000164134|HPRD:10471|Vega:OTTHUMG00000137363 4 4q31.1 N(alpha)-acetyltransferase 15, NatA auxiliary subunit protein-coding NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit O N-alpha-acetyltransferase 15, NatA auxiliary subunit|N-terminal acetyltransferase|NMDA receptor regulated 1|NMDA receptor-regulated protein 1|gastric cancer antigen Ga19|protein tubedown-1|transcriptional coactivator tubedown-100|tubedown-1 20121230 -9606 80157 CWH43 - CWH43-C HGNC:26133|Ensembl:ENSG00000109182|HPRD:08638|Vega:OTTHUMG00000128627 4 4p11 cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding CWH43 cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) O PGAP2-interacting protein|cell wall biogenesis protein 43 C-terminal homolog 20121230 -9606 80161 ASMTL-AS1 RP11-261P4.7 ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105 HGNC:25811|HPRD:06522 X|Y Xp22.33; Yp11.32 ASMTL antisense RNA 1 miscRNA ASMTL-AS1 ASMTL antisense RNA 1 O - 20121230 -9606 80162 ATHL1 - - HGNC:26210|Ensembl:ENSG00000142102|HPRD:07999|Vega:OTTHUMG00000153218 11 11p15.5 ATH1, acid trehalase-like 1 (yeast) protein-coding ATHL1 ATH1, acid trehalase-like 1 (yeast) O acid trehalase-like protein 1 20121230 -9606 80164 FLJ22184 - - Ensembl:ENSG00000183248 19 19p13.2 putative uncharacterized protein FLJ22184 protein-coding - - - - 20121230 -9606 80167 C4orf29 - - HGNC:26111|Ensembl:ENSG00000164074|HPRD:07953|Vega:OTTHUMG00000133304 4 4q28.2 chromosome 4 open reading frame 29 protein-coding C4orf29 chromosome 4 open reading frame 29 O uncharacterized protein C4orf29 20121230 -9606 80168 MOGAT2 - DGAT2L5|MGAT2 HGNC:23248|MIM:610270|Ensembl:ENSG00000166391|HPRD:11367|Vega:OTTHUMG00000165341 11 11q13.5 monoacylglycerol O-acyltransferase 2 protein-coding MOGAT2 monoacylglycerol O-acyltransferase 2 O 2-acylglycerol O-acyltransferase 2|acyl CoA:monoacylglycerol acyltransferase 2|acyl-CoA:monoacylglycerol acyltransferase 2|diacylglycerol O-acyltransferase candidate 5|diacylglycerol acyltransferase 2-like protein 5|hDC5|hMGAT2 20121230 -9606 80169 CTC1 - AAF-132|AAF132|C17orf68|CRMCC|tmp494178 HGNC:26169|MIM:613129|Ensembl:ENSG00000178971|HPRD:07980|Vega:OTTHUMG00000178443 17 17p13.1 CTS telomere maintenance complex component 1 protein-coding CTC1 CTS telomere maintenance complex component 1 O CST complex subunit CTC1|HBV DNAPTP1-transactivated protein B|alpha accessory factor 132|conserved telomere capping protein 1 20121230 -9606 80173 IFT74 - CCDC2|CMG-1|CMG1 HGNC:21424|MIM:608040|Ensembl:ENSG00000096872|HPRD:09727|Vega:OTTHUMG00000021028 9 9p21.2 intraflagellar transport 74 homolog (Chlamydomonas) protein-coding IFT74 intraflagellar transport 74 homolog (Chlamydomonas) O capillary morphogenesis gene 1 protein|capillary morphogenesis protein 1|coiled-coil domain containing 2|coiled-coil domain-containing protein 2|intraflagellar transport protein 74 homolog 20121230 -9606 80174 DBF4B UNQ3002 ASKL1|CHIFB|DRF1|ZDBF1B HGNC:17883|MIM:611661|Ensembl:ENSG00000161692|HPRD:16840|Vega:OTTHUMG00000165717 17 17q21.31|17q21 DBF4 homolog B (S. cerevisiae) protein-coding DBF4B DBF4 homolog B (S. cerevisiae) O ASK-like protein 1|Dbf4-related factor 1|activator of S-phase kinase-like protein 1|chiffon homolog B|protein DBF4 homolog B|zinc finger, DBF-type containing 1B 20121230 -9606 80176 SPSB1 RP3-324M8.1 SSB-1|SSB1 HGNC:30628|MIM:611657|Ensembl:ENSG00000171621|HPRD:18106|Vega:OTTHUMG00000001279 1 1p36.22 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 O SPRY domain-containing SOCS box protein 1|SPRY domain-containing SOCS box protein SSB-1|novel SPRY domain containing protein 20121230 -9606 80177 MYCT1 - MTLC HGNC:23172|Ensembl:ENSG00000120279|HPRD:17617|Vega:OTTHUMG00000015850 6 6q25.2 myc target 1 protein-coding MYCT1 myc target 1 O myc target in myeloid cells 1|myc target in myeloid cells protein 1|myc target protein 1 20121230 -9606 80178 C16orf59 - - HGNC:25849|Ensembl:ENSG00000162062|HPRD:07840|Vega:OTTHUMG00000128859 16 16p13.3 chromosome 16 open reading frame 59 protein-coding C16orf59 chromosome 16 open reading frame 59 O uncharacterized protein C16orf59 20121230 -9606 80179 MYO19 - MYOHD1 HGNC:26234|Ensembl:ENSG00000141140|HPRD:10107|Vega:OTTHUMG00000180384 17 17q12 myosin XIX protein-coding MYO19 myosin XIX O myosin head domain containing 1|myosin head domain-containing protein 1|myosin-XIX|unconventional myosin-XIX 20121230 -9606 80183 KIAA0226L RP11-247M1.4 C13orf18 HGNC:20420|Ensembl:ENSG00000102445|HPRD:12615|Vega:OTTHUMG00000016868 13 13q14.13 KIAA0226-like protein-coding KIAA0226L KIAA0226-like O uncharacterized protein KIAA0226-like 20121230 -9606 80184 CEP290 - 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 HGNC:29021|MIM:610142|Ensembl:ENSG00000198707|HPRD:08585|HPRD:10856|Vega:OTTHUMG00000169871 12 12q21.32 centrosomal protein 290kDa protein-coding CEP290 centrosomal protein 290kDa O Bardet-Biedl syndrome 14 protein|CTCL tumor antigen se2-2|Meckel syndrome, type 4|POC3 centriolar protein homolog|cancer/testis antigen 87|centrosomal protein of 290 kDa|monoclonal antibody 3H11 antigen|nephrocytsin-6|prostate cancer antigen T21|tumor antigen se2-2 20121230 -9606 80185 TTI2 - C8orf41 HGNC:26262|MIM:614426|Ensembl:ENSG00000129696|HPRD:13390|Vega:OTTHUMG00000163956 8 8p12 TELO2 interacting protein 2 protein-coding TTI2 TELO2 interacting protein 2 O TELO2-interacting protein 2|Tel2 interacting protein 2 homolog 20121230 -9606 80194 TMEM134 - - HGNC:26142|Ensembl:ENSG00000172663|HPRD:08642|Vega:OTTHUMG00000168034 11 11q13.2 transmembrane protein 134 protein-coding TMEM134 transmembrane protein 134 O - 20121230 -9606 80195 TMEM254 RP11-369J21.6 C10orf57|bA369J21.6 HGNC:25804|Ensembl:ENSG00000133678|HPRD:08501|Vega:OTTHUMG00000018602 10 10q22.3 transmembrane protein 254 protein-coding TMEM254 transmembrane protein 254 O transmembrane protein C10orf57 20121230 -9606 80196 RNF34 - CARP-1|CARP1|RFI|RIF|RIFF|hRFI HGNC:17297|MIM:608299|Ensembl:ENSG00000170633|HPRD:10509|Vega:OTTHUMG00000171524 12 12q24.31 ring finger protein 34, E3 ubiquitin protein ligase protein-coding RNF34 ring finger protein 34, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RNF34|FYVE-RING finger protein MOMO|RING finger protein RIFF|caspase regulator CARP1|caspases-8 and -10-associated RING finger protein 1|human RING finger homologous to inhibitor of apoptosis protein 20121230 -9606 80198 MUS81 - SLX3 HGNC:29814|MIM:606591|Ensembl:ENSG00000172732|HPRD:09419|Vega:OTTHUMG00000166633 11 11q13 MUS81 endonuclease homolog (S. cerevisiae) protein-coding MUS81 MUS81 endonuclease homolog (S. cerevisiae) O SLX3 structure-specific endonuclease subunit homolog|crossover junction endonuclease MUS81 20121230 -9606 80199 FUZ - FY|NTD HGNC:26219|MIM:610622|Ensembl:ENSG00000010361|HPRD:08662|Vega:OTTHUMG00000167281 19 19q13.33 fuzzy homolog (Drosophila) protein-coding FUZ fuzzy homolog (Drosophila) O protein fuzzy homolog 20121230 -9606 80201 HKDC1 - - HGNC:23302|Ensembl:ENSG00000156510|HPRD:08006|Vega:OTTHUMG00000018371 10 10q22.1 hexokinase domain containing 1 protein-coding HKDC1 hexokinase domain containing 1 O hexokinase domain-containing protein 1|putative hexokinase HKDC1 20121230 -9606 80204 FBXO11 UG063H01 FBX11|PRMT9|UBR6|VIT1 HGNC:13590|MIM:607871|Ensembl:ENSG00000138081|HPRD:06985|Vega:OTTHUMG00000129130 2 2p16.3 F-box protein 11 protein-coding FBXO11 F-box protein 11 O F-box only protein 11|protein arginine N-methyltransferase 9|ubiquitin protein ligase E3 component n-recognin 6|vitiligo-associated protein 1|vitiligo-associated protein VIT-1 20121230 -9606 80205 CHD9 AD-013 AD013|CReMM|KISH2|PRIC320 HGNC:25701|Ensembl:ENSG00000177200|HPRD:08570|Vega:OTTHUMG00000173188 16 16q12.2 chromodomain helicase DNA binding protein 9 protein-coding CHD9 chromodomain helicase DNA binding protein 9 O ATP-dependent helicase CHD9|CHD-9|PPAR-alpha-interacting complex protein 320 kDa|PPAR{gamma}-interacting cofactor 320 kDa|chromatin remodeling factor CHROM1|chromatin-related mesenchymal modulator|chromatin-remodeling factor CHROM1|chromodomain-helicase-DNA-binding protein 9|ciprofibrate bound protein p240|kismet homolog 2|peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein|proteinx0008 20121230 -9606 80206 FHOD3 - FHOS2|Formactin2 HGNC:26178|MIM:609691|Ensembl:ENSG00000134775|HPRD:16894|Vega:OTTHUMG00000182381 18 18q12 formin homology 2 domain containing 3 protein-coding FHOD3 formin homology 2 domain containing 3 O FH1/FH2 domain-containing protein 3|formactin-2|formin homolog overexpressed in spleen 2|hFHOS2 20121230 -9606 80207 OPA3 - MGA3 HGNC:8142|MIM:606580|Ensembl:ENSG00000125741|HPRD:05956|Vega:OTTHUMG00000182125 19 19q13.32 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) protein-coding OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) O Optic atrophy 3 (Iraqi-Jewish 'optic atrophy plus')|optic atrophy 3 protein 20121230 -9606 80208 SPG11 - KIAA1840 HGNC:11226|MIM:610844|Ensembl:ENSG00000104133|HPRD:07963|Vega:OTTHUMG00000131199 15 15q14 spastic paraplegia 11 (autosomal recessive) protein-coding SPG11 spastic paraplegia 11 (autosomal recessive) O colorectal carcinoma-associated protein|spastic paraplegia 11 protein|spatacsin 20121230 -9606 80209 PROSER1 RP11-50D16.2 C13orf23 HGNC:20291|Ensembl:ENSG00000120685|HPRD:12616|Vega:OTTHUMG00000016764 13 13q13.3 proline and serine rich 1 protein-coding PROSER1 proline and serine rich 1 O proline and serine-rich protein 1 20121230 -9606 80210 ARMC9 - ARM|KU-MEL-1 HGNC:20730|Ensembl:ENSG00000135931|HPRD:07778|Vega:OTTHUMG00000133229 2 2q37.1 armadillo repeat containing 9 protein-coding ARMC9 armadillo repeat containing 9 O NS21|armadillo/beta-catenin-like repeats|lisH domain-containing protein ARMC9|melanoma/melanocyte specific protein KU-MEL-1|melanoma/melanocyte-specific tumor antigen KU-MEL-1 20121230 -9606 80212 CCDC92 - - HGNC:29563|Ensembl:ENSG00000119242|HPRD:16919|Vega:OTTHUMG00000168725 12 12q24.31 coiled-coil domain containing 92 protein-coding CCDC92 coiled-coil domain containing 92 O coiled-coil domain-containing protein 92|limkain beta 2|limkain beta-2 20121230 -9606 80213 TM2D3 - BLP2 HGNC:24128|MIM:610014|Ensembl:ENSG00000184277|HPRD:16554|Vega:OTTHUMG00000149872 15 15q26.3 TM2 domain containing 3 protein-coding TM2D3 TM2 domain containing 3 O BBP-like protein 2|TM2 domain-containing protein 3|beta-amyloid-binding protein-like protein 2 20121230 -9606 80215 RUNX1-IT1 - C21orf96 HGNC:16623 21 21q22.12 RUNX1 intronic transcript 1 (non-protein coding) miscRNA RUNX1-IT1 RUNX1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 80216 ALPK1 - 8430410J10Rik|LAK HGNC:20917|MIM:607347|Ensembl:ENSG00000073331|HPRD:09554|Vega:OTTHUMG00000132911 4 4q25 alpha-kinase 1 protein-coding ALPK1 alpha-kinase 1 O alpha-protein kinase 1|chromosome 4 kinase|lymphocyte alpha-kinase|lymphocyte alpha-protein kinase 20121230 -9606 80217 WDR96 RP11-373N18.2 C10orf79|bA373N18.2 HGNC:26684|Ensembl:ENSG00000197748|HPRD:07625 10 10q25.1 WD repeat domain 96 protein-coding WDR96 WD repeat domain 96 O WD repeat-containing protein 96|WD repeat-containing protein C10orf79 20121230 -9606 80218 NAA50 - MAK3|NAT13|NAT5|SAN|hNAT5|hSAN HGNC:29533|MIM:610834|Ensembl:ENSG00000121579|HPRD:14350|Vega:OTTHUMG00000159294 3 3q13.2 N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit O Mak3 homolog|N-acetyltransferase 13 (GCN5-related)|N-acetyltransferase 5|N-acetyltransferase san homolog|N-alpha-acetyltransferase 50|N-alpha-acetyltransferase 50, NatE catalytic subunit|natE catalytic subunit|separation anxiety 20121230 -9606 80219 COQ10B - - HGNC:25819|Ensembl:ENSG00000115520|HPRD:08582|Vega:OTTHUMG00000132745 2 2q33.1 coenzyme Q10 homolog B (S. cerevisiae) protein-coding COQ10B coenzyme Q10 homolog B (S. cerevisiae) O coenzyme Q-binding protein COQ10 homolog B, mitochondrial 20121230 -9606 80221 ACSF2 UNQ493/PRO1009 ACSMW|AVYV493 HGNC:26101|MIM:610465|Ensembl:ENSG00000167107|HPRD:13380|Vega:OTTHUMG00000162128 17 17q21.33 acyl-CoA synthetase family member 2 protein-coding ACSF2 acyl-CoA synthetase family member 2 O PPARG binding, long chain fatty acid acyl Co-A ligase like|acyl-CoA synthetase family member 2, mitochondrial 20121230 -9606 80222 TARS2 RP11-54A4.9 TARSL1|thrRS HGNC:30740|MIM:612805|Ensembl:ENSG00000143374|HPRD:18148|Vega:OTTHUMG00000012809 1 1q21.3 threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding TARS2 threonyl-tRNA synthetase 2, mitochondrial (putative) O threonine--tRNA ligase, mitochondrial|threonyl-tRNA synthetase-like 1 20121230 -9606 80223 RAB11FIP1 - NOEL1A|RCP|rab11-FIP1 HGNC:30265|MIM:608737|Ensembl:ENSG00000156675|HPRD:09787|Vega:OTTHUMG00000164026 8 8p11.22 RAB11 family interacting protein 1 (class I) protein-coding RAB11FIP1 RAB11 family interacting protein 1 (class I) O RAB11 coupling protein|Rab effector protein|Rab-interacting recycling protein|rab-coupling protein|rab11 family-interacting protein 1 20121230 -9606 80224 NUBPL - C14orf127|IND1|huInd1 HGNC:20278|MIM:613621|Ensembl:ENSG00000151413|HPRD:16600|Vega:OTTHUMG00000170521 14 14q12 nucleotide binding protein-like protein-coding NUBPL nucleotide binding protein-like O IND1 homolog|iron-sulfur protein NUBPL|iron-sulfur protein required for NADH dehydrogenase 20121230 -9606 80227 PAAF1 - PAAF|Rpn14|WDR71 HGNC:25687|Ensembl:ENSG00000175575|HPRD:07761|Vega:OTTHUMG00000168062 11 11q13.4 proteasomal ATPase-associated factor 1 protein-coding PAAF1 proteasomal ATPase-associated factor 1 O WD repeat domain 71|WD repeat-containing protein 71 20121230 -9606 80228 ORAI2 PP1729 C7orf19|CBCIP2|MEM142B|TMEM142B HGNC:21667|MIM:610929|Ensembl:ENSG00000160991|HPRD:09860|Vega:OTTHUMG00000157722 7 7q22.1 ORAI calcium release-activated calcium modulator 2 protein-coding ORAI2 ORAI calcium release-activated calcium modulator 2 O CAP-binding protein complex interacting protein 2|CAP-binding protein complex-interacting protein 2|H_NH0514P08.8|protein orai-2|putative protein ORAI2-2|transmembrane protein 142B 20121230 -9606 80230 RUFY1 - RABIP4|ZFYVE12 HGNC:19760|MIM:610327|Ensembl:ENSG00000176783|HPRD:15282|Vega:OTTHUMG00000130913 5 5q35.3 RUN and FYVE domain containing 1 protein-coding RUFY1 RUN and FYVE domain containing 1 O FYVE-finger protein EIP1|RUN and FYVE domain-containing protein 1|la-binding protein 1|rab4-interacting protein|zinc finger FYVE domain-containing protein 12 20121230 -9606 80231 CXorf21 - - HGNC:25667|Ensembl:ENSG00000120280|HPRD:06518|Vega:OTTHUMG00000021325 X Xp21.2 chromosome X open reading frame 21 protein-coding CXorf21 chromosome X open reading frame 21 O 5430427O19Rik|uncharacterized protein CXorf21 20121230 -9606 80232 WDR26 PRO0852 CDW2|GID7|MIP2 HGNC:21208|Ensembl:ENSG00000162923|HPRD:18298|Vega:OTTHUMG00000037636 1 1q42.13 WD repeat domain 26 protein-coding WDR26 WD repeat domain 26 O CUL4- and DDB1-associated WDR protein 2|GID complex subunit 7 homolog|WD repeat-containing protein 26|myocardial ischemic preconditioning up-regulated protein 2|myocardial ischemic preconditioning upregulated protein 2 20121230 -9606 80233 C17orf70 - FAAP100 HGNC:26171|MIM:611301|Ensembl:ENSG00000185504|HPRD:07982|Vega:OTTHUMG00000167764 17 17q25.3 chromosome 17 open reading frame 70 protein-coding C17orf70 chromosome 17 open reading frame 70 O Fanconi anemia associated protein 100 kDa subunit|Fanconi anemia core complex 100 kDa subunit|Fanconi anemia-associated protein of 100 kDa|Fanconi anemia-associated protein, 100kDa 20121230 -9606 80235 PIGZ - GPI-MT-IV|PIG-Z|SMP3 HGNC:30596|MIM:611671|Ensembl:ENSG00000119227|HPRD:18076|Vega:OTTHUMG00000155522 3 3q29 phosphatidylinositol glycan anchor biosynthesis, class Z protein-coding PIGZ phosphatidylinositol glycan anchor biosynthesis, class Z O GPI mannosyltransferase 4|GPI mannosyltransferase IV|SMP3 mannosyltransferase|phosphatidylinositol glycan, class Z|phosphatidylinositol-glycan biosynthesis class Z protein 20121230 -9606 80237 ELL3 - - HGNC:23113|MIM:609885|Ensembl:ENSG00000128886|HPRD:10933|Vega:OTTHUMG00000059936 15 15q15.3 elongation factor RNA polymerase II-like 3 protein-coding ELL3 elongation factor RNA polymerase II-like 3 O RNA polymerase II elongation factor ELL3 20121230 -9606 80243 PREX2 - 6230420N16Rik|DEP.2|DEPDC2|P-REX2 HGNC:22950|MIM:612139|Ensembl:ENSG00000046889|HPRD:13135|Vega:OTTHUMG00000164402 8 8q13.2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 protein-coding PREX2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 O DEP domain-containing protein 2|PtdIns(3,4,5)-dependent Rac exchanger 2|phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein 20121230 -9606 80254 CEP63 - - HGNC:25815|MIM:614724|Ensembl:ENSG00000182923|HPRD:07826|Vega:OTTHUMG00000159725 3 3q22.2 centrosomal protein 63kDa protein-coding CEP63 centrosomal protein 63kDa O centrosomal protein of 63 kDa|centrosome protein CEP63 20121230 -9606 80255 SLC35F5 UNQ2545/PRO6097 - HGNC:23617|Ensembl:ENSG00000115084|HPRD:11579|Vega:OTTHUMG00000131361 2 2q14.1 solute carrier family 35, member F5 protein-coding SLC35F5 solute carrier family 35, member F5 O HCV NS5A-transactivated protein 3|hepatitis C virus NS5A-transactivated protein 3|solute carrier family 35 member F5 20121230 -9606 80256 FAM214B - KIAA1539|P1.11659_5|RP11-182N22.6|bA182N22.6 HGNC:25666|Ensembl:ENSG00000005238|HPRD:13869|Vega:OTTHUMG00000019847 9 9p13.3 family with sequence similarity 214, member B protein-coding FAM214B family with sequence similarity 214, member B O protein FAM214B 20121230 -9606 80258 EFHC2 RP11-334D18.1 dJ1158H2.1 HGNC:26233|MIM:300817|Ensembl:ENSG00000183690|HPRD:06540|Vega:OTTHUMG00000021393 X Xp11.3 EF-hand domain (C-terminal) containing 2 protein-coding EFHC2 EF-hand domain (C-terminal) containing 2 O EF-hand domain-containing family member C2 20121230 -9606 80262 C16orf70 - C16orf6|LIN10|lin-10 HGNC:29564|Ensembl:ENSG00000125149|HPRD:17460|Vega:OTTHUMG00000137510 16 16q22.1 chromosome 16 open reading frame 70 protein-coding C16orf70 chromosome 16 open reading frame 70 O UPF0183 protein C16orf70|lin-10 homolog 20121230 -9606 80263 TRIM45 RP11-229A19.2 RNF99 HGNC:19018|MIM:609318|Ensembl:ENSG00000134253|HPRD:15562|Vega:OTTHUMG00000012119 1 1p13.1 tripartite motif containing 45 protein-coding TRIM45 tripartite motif containing 45 O ring finger protein 99|tripartite motif-containing 45|tripartite motif-containing protein 45 20121230 -9606 80264 ZNF430 - - HGNC:20808|Ensembl:ENSG00000118620|HPRD:15788 19 19p12 zinc finger protein 430 protein-coding ZNF430 zinc finger protein 430 O - 20121230 -9606 80267 EDEM3 - C1orf22 HGNC:16787|MIM:610214|Ensembl:ENSG00000116406|HPRD:10724|Vega:OTTHUMG00000035387 1 1q25 ER degradation enhancer, mannosidase alpha-like 3 protein-coding EDEM3 ER degradation enhancer, mannosidase alpha-like 3 O ER degradation-enhancing -mannosidase-like protein 3|ER degradation-enhancing alpha-mannosidase-like 3 20121230 -9606 80270 HSD3B7 - CBAS1|PFIC4|SDR11E3 HGNC:18324|MIM:607764|Ensembl:ENSG00000099377|HPRD:09680|Vega:OTTHUMG00000132417 16 16p11.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 O 3 beta-hydroxy-delta 5-C27-steroid oxidoreductase|3 beta-hydroxysteroid dehydrogenase type 7|3 beta-hydroxysteroid dehydrogenase type VII|3-beta-HSD VII|3-beta-hydroxy-Delta(5)-C27 steroid oxidoreductase|C(27)-3BETA-HSD|c(27) 3-beta-HSD|cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase|short chain dehydrogenase/reductase family 11E, member 3 20121230 -9606 80271 ITPKC - IP3-3KC|IP3KC HGNC:14897|MIM:606476|Ensembl:ENSG00000086544|HPRD:09400 19 19q13.1 inositol-trisphosphate 3-kinase C protein-coding ITPKC inositol-trisphosphate 3-kinase C O IP3 3-kinase C|IP3K C|InsP 3 kinase C|inositol 1,4,5-trisphosphate 3-kinase C|insP 3-kinase C 20121230 -9606 80273 GRPEL1 - HMGE HGNC:19696|MIM:606173|Ensembl:ENSG00000109519|HPRD:07550|Vega:OTTHUMG00000090495 4 4p16 GrpE-like 1, mitochondrial (E. coli) protein-coding GRPEL1 GrpE-like 1, mitochondrial (E. coli) O GrpE-like protein cochaperone|grpE protein homolog 1, mitochondrial|mt-GrpE#1 20121230 -9606 80274 SCUBE1 - - HGNC:13441|MIM:611746|Ensembl:ENSG00000159307|HPRD:18029|Vega:OTTHUMG00000150679 22 22q13 signal peptide, CUB domain, EGF-like 1 protein-coding SCUBE1 signal peptide, CUB domain, EGF-like 1 O signal peptide, CUB and EGF-like domain-containing protein 1|signal peptide-CUB domain-EGF-related 1 20121230 -9606 80279 CDK5RAP3 MSTP016 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114 HGNC:18673|MIM:608202|Ensembl:ENSG00000108465|HPRD:12190|Vega:OTTHUMG00000178682 17 17q21.32 CDK5 regulatory subunit associated protein 3 protein-coding CDK5RAP3 CDK5 regulatory subunit associated protein 3 O CDK5 regulatory subunit-associated protein 3|LXXLL/leucine-zipper-containing ARFbinding protein|ischemic heart CDK5 activator-binding protein C53 20121230 -9606 80298 MTERFD3 - mTERF2|mTERFL HGNC:30779|Ensembl:ENSG00000120832|HPRD:17431|Vega:OTTHUMG00000170007 12 12q24.1 MTERF domain containing 3 protein-coding MTERFD3 MTERF domain containing 3 O mTERF domain-containing protein 3, mitochondrial|mitochondrial transcription termination factor 2|mitochondrial transcription termination factor-like protein 20121230 -9606 80301 PLEKHO2 PP9099 PLEKHQ1|PP1628|pp9099 HGNC:30026|Ensembl:ENSG00000241839|Ensembl:ENSG00000249240|HPRD:15910|Vega:OTTHUMG00000133050|Vega:OTTHUMG00000161678 15 15q22.1 pleckstrin homology domain containing, family O member 2 protein-coding PLEKHO2 pleckstrin homology domain containing, family O member 2 O PH domain-containing family O member 2|PH domain-containing family Q member 1|PH domain-containing protein|pleckstrin homology domain containing, family Q member 1|pleckstrin homology domain-containing family O member 2|pleckstrin homology domain-containing family Q member 1 20121230 -9606 80303 EFHD1 PP3051 MST133|MSTP133|SWS2 HGNC:29556|MIM:611617|Ensembl:ENSG00000115468|HPRD:13265|Vega:OTTHUMG00000133263 2 2q37.1 EF-hand domain family, member D1 protein-coding EFHD1 EF-hand domain family, member D1 O EF-hand domain-containing protein 1|EF-hand domain-containing protein D1|swiprosin-2 20121230 -9606 80304 C2orf44 PP384 - HGNC:26157|Ensembl:ENSG00000163026|HPRD:07972|Vega:OTTHUMG00000125498 2 2p23.3 chromosome 2 open reading frame 44 protein-coding C2orf44 chromosome 2 open reading frame 44 O WD repeat-containing protein C2orf44 20121230 -9606 80305 TRABD RP3-402G11.12-004 LP6054|PP2447 HGNC:28805|Ensembl:ENSG00000170638|HPRD:11450|Vega:OTTHUMG00000044644 22 22q13.33 TraB domain containing protein-coding TRABD TraB domain containing O traB domain-containing protein 20121230 -9606 80306 MED28 FKSG20 1500003D12Rik|EG1|magicin HGNC:24628|MIM:610311|Ensembl:ENSG00000118579|HPRD:14381|Vega:OTTHUMG00000161980 4 4p16 mediator complex subunit 28 protein-coding MED28 mediator complex subunit 28 O endothelial-derived gene 1|endothelial-derived protein 1|mediator of RNA polymerase II transcription subunit 28|mediator of RNA polymerase II transcription, subunit 28 homolog|merlin and Grb2-interacting cytoskeletal protein|tumor angiogenesis marker EG-1 20121230 -9606 80307 FER1L4 RP3-477O4.7 C20orf124|bA563A22B.1|dJ309K20.1 HGNC:15801 20 20q11.22 fer-1-like 4 (C. elegans) pseudogene pseudo FER1L4 fer-1-like 4 (C. elegans) pseudogene O - 20121230 -9606 80308 FLAD1 PP591 FAD1|FADS|RP11-307C12.7 HGNC:24671|MIM:610595|Ensembl:ENSG00000160688|HPRD:17887|Vega:OTTHUMG00000037416 1 1q21.3 FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) protein-coding FLAD1 FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) O FAD pyrophosphorylase|FAD synthase|FAD synthetase|FAD-synthetase|FMN adenylyltransferase|Fad1, flavin adenine dinucleotide synthetase, homolog|flavin adenine dinucleotide synthase|flavin adenine dinucleotide synthetase 20121230 -9606 80309 SPHKAP - SKIP HGNC:30619|MIM:611646|Ensembl:ENSG00000153820|HPRD:18052|Vega:OTTHUMG00000153584 2 2q36 SPHK1 interactor, AKAP domain containing protein-coding SPHKAP SPHK1 interactor, AKAP domain containing O A-kinase anchor protein SPHKAP|SPHK1 (sphingosine kinase type 1) interacting protein|SPHK1-interactor and AKAP domain-containing protein|sphingosine kinase type 1-interacting protein 20121230 -9606 80310 PDGFD MSTP036 IEGF|SCDGF-B|SCDGFB HGNC:30620|MIM:609673|Ensembl:ENSG00000170962|HPRD:17830|Vega:OTTHUMG00000165953 11 11q22.3 platelet derived growth factor D protein-coding PDGFD platelet derived growth factor D O PDGF-D|iris-expressed growth factor|platelet-derived growth factor D|spinal cord derived growth factor B|spinal cord-derived growth factor B|spinal cord-derived growth factor-B 20121230 -9606 80311 KLHL15 - - HGNC:29347|Ensembl:ENSG00000174010|Vega:OTTHUMG00000021261 X Xp22.1-p21 kelch-like 15 (Drosophila) protein-coding KLHL15 kelch-like 15 (Drosophila) O kelch-like protein 15 20121230 -9606 80312 TET1 RP11-119F7.1 CXXC6|LCX|bA119F7.1 HGNC:29484|MIM:607790|Ensembl:ENSG00000138336|HPRD:09694|Vega:OTTHUMG00000018359 10 10q21 tet methylcytosine dioxygenase 1 protein-coding TET1 tet methylcytosine dioxygenase 1 O CXXC finger 6|CXXC zinc finger 6|CXXC-type zinc finger protein 6|leukemia-associated protein with a CXXC domain|methylcytosine dioxygenase TET1|ten-eleven translocation 1 gene protein|ten-eleven translocation-1|tet oncogene 1 20121230 -9606 80313 LRRC27 RP11-273H7.2 - HGNC:29346|Ensembl:ENSG00000148814|HPRD:17451|Vega:OTTHUMG00000019284 10 10q26.3 leucine rich repeat containing 27 protein-coding LRRC27 leucine rich repeat containing 27 O leucine-rich repeat-containing protein 27 20121230 -9606 80314 EPC1 - Epl1 HGNC:19876|MIM:610999|Ensembl:ENSG00000120616|HPRD:09941|Vega:OTTHUMG00000017925 10 10p11 enhancer of polycomb homolog 1 (Drosophila) protein-coding EPC1 enhancer of polycomb homolog 1 (Drosophila) O enhancer of polycomb homolog 1 20121230 -9606 80315 CPEB4 - - HGNC:21747|MIM:610607|Ensembl:ENSG00000113742|HPRD:16746|Vega:OTTHUMG00000130541 5 5q21 cytoplasmic polyadenylation element binding protein 4 protein-coding CPEB4 cytoplasmic polyadenylation element binding protein 4 O CPE-BP4|CPE-binding protein 4|cytoplasmic polyadenylation element-binding protein 4|hCPEB-4 20121230 -9606 80316 PPP1R2P9 - I-4 HGNC:16324|HPRD:06593 X Xp11.3 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9 pseudo PPP1R2P9 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9 O - 20121230 -9606 80317 ZKSCAN3 - ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47 HGNC:13853|MIM:612791|Ensembl:ENSG00000189298|HPRD:11705|Vega:OTTHUMG00000014521 6 6p22.1 zinc finger with KRAB and SCAN domains 3 protein-coding ZKSCAN3 zinc finger with KRAB and SCAN domains 3 O zinc finger and SCAN domain-containing protein 13|zinc finger protein 306|zinc finger protein 309|zinc finger protein 47 homolog|zinc finger protein with KRAB and SCAN domains 3|zinc finger protein zfp47 20121230 -9606 80318 GKAP1 FKSG21 GKAP42 HGNC:17496|MIM:611356|Ensembl:ENSG00000165113|HPRD:17042|Vega:OTTHUMG00000020106 9 9q21.32 G kinase anchoring protein 1 protein-coding GKAP1 G kinase anchoring protein 1 O G kinase-anchoring protein 1|cGMP-dependent protein kinase anchoring protein 42kDa|cGMP-dependent protein kinase-anchoring protein of 42 kDa|protein kinase anchoring protein GKAP42 20121230 -9606 80319 CXXC4 - IDAX HGNC:24593|MIM:611645|Ensembl:ENSG00000168772|HPRD:16773|Vega:OTTHUMG00000131121 4 4q22-q24 CXXC finger protein 4 protein-coding CXXC4 CXXC finger protein 4 O CXXC finger 4|CXXC-type zinc finger protein 4|Dvl-binding protein IDAX (inhibition of the Dvl and Axin complex)|inhibition of the Dvl and axin complex protein 20121230 -9606 80320 SP6 - EPFN|EPIPROFIN|KLF14 HGNC:14530|MIM:608613|Ensembl:ENSG00000189120|HPRD:12269|Vega:OTTHUMG00000132067 17 17q21.32 Sp6 transcription factor protein-coding SP6 Sp6 transcription factor O Kruppel-like factor 14|krueppel-like factor 14|transcription factor Sp6 20121230 -9606 80321 CEP70 - BITE HGNC:29972|MIM:614310|Ensembl:ENSG00000114107|HPRD:16779|Vega:OTTHUMG00000159891 3 3q22.3 centrosomal protein 70kDa protein-coding CEP70 centrosomal protein 70kDa O centrosomal protein of 70 kDa|p10-binding protein 20121230 -9606 80323 CCDC68 - SE57-1 HGNC:24350|Ensembl:ENSG00000166510|HPRD:18034|Vega:OTTHUMG00000132708 18 18q21 coiled-coil domain containing 68 protein-coding CCDC68 coiled-coil domain containing 68 O CTCL tumor antigen se57-1|CTCL-associated antigen se57-1|coiled-coil domain-containing protein 68|cutaneous T-cell lymphoma associated antigen|cutaneous T-cell lymphoma-associated antigen se57-1 20121230 -9606 80324 PUS1 PP8985 MLASA1 HGNC:15508|MIM:608109|Ensembl:ENSG00000177192|HPRD:10481|Vega:OTTHUMG00000128507 12 12q24.33 pseudouridylate synthase 1 protein-coding PUS1 pseudouridylate synthase 1 O mitochondrial tRNA pseudouridine synthase A|tRNA pseudouridine synthase A, mitochondrial|tRNA pseudouridine(38-40) synthase|tRNA pseudouridylate synthase I|tRNA uridine isomerase I|tRNA-uridine isomerase I 20121230 -9606 80325 ABTB1 PP2259 BPOZ|BTB3|EF1ABP HGNC:18275|MIM:608308|Ensembl:ENSG00000114626|HPRD:10513|Vega:OTTHUMG00000159636 3 3q21 ankyrin repeat and BTB (POZ) domain containing 1 protein-coding ABTB1 ankyrin repeat and BTB (POZ) domain containing 1 O ankyrin repeat and BTB/POZ domain-containing protein 1|elongation factor 1A-binding protein 20121230 -9606 80326 WNT10A - OODD|SSPS|STHAG4 HGNC:13829|MIM:606268|Ensembl:ENSG00000135925|HPRD:16207|Vega:OTTHUMG00000133085 2 2q35 wingless-type MMTV integration site family, member 10A protein-coding WNT10A wingless-type MMTV integration site family, member 10A O protein Wnt-10a 20121230 -9606 80327 MAPRE1P1 - MAPRE1P HGNC:29624 8 8q MAPRE1 pseudogene 1 pseudo MAPRE1P1 MAPRE1 pseudogene 1 O - 20121230 -9606 80328 ULBP2 UNQ463/PRO791 N2DL2|RAET1H HGNC:14894|MIM:605698|Ensembl:ENSG00000131015|HPRD:16143|Vega:OTTHUMG00000015803 6 6q25 UL16 binding protein 2 protein-coding ULBP2 UL16 binding protein 2 O ALCAN-alpha|N2DL-2|NKG2D ligand 2|NKG2DL2|UL16-binding protein 2|retinoic acid early transcript 1 H|retinoic acid early transcript 1H 20121230 -9606 80329 ULBP1 RP11-472G23.2 RAET1I HGNC:14893|MIM:605697|Ensembl:ENSG00000111981|HPRD:09297|Vega:OTTHUMG00000015810 6 6q25 UL16 binding protein 1 protein-coding ULBP1 UL16 binding protein 1 O N2DL-1|NKG2D ligand 1|NKG2DL1|UL16-binding protein 1|alcan-beta|retinoic acid early transcript 1I 20121230 -9606 80331 DNAJC5 - CLN4|CLN4B|CSP|DNAJC5A|NCL HGNC:16235|MIM:611203|Ensembl:ENSG00000101152|HPRD:08539|Vega:OTTHUMG00000033007 20 20q13.33 DnaJ (Hsp40) homolog, subfamily C, member 5 protein-coding DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 O cysteine string protein alpha|dnaJ homolog subfamily C member 5 20121230 -9606 80332 ADAM33 RP5-964F7.2 C20orf153|DJ964F7.1 HGNC:15478|MIM:607114|Ensembl:ENSG00000149451|HPRD:06173|Vega:OTTHUMG00000031758 20 20p13 ADAM metallopeptidase domain 33 protein-coding ADAM33 ADAM metallopeptidase domain 33 O ADAM 33|a disintegrin and metalloprotease 33|a disintegrin and metalloproteinase domain 33|disintegrin and metalloproteinase domain-containing protein 33|disintegrin and reprolysin metalloproteinase family protein 20121230 -9606 80333 KCNIP4 - CALP|KCHIP4 HGNC:30083|MIM:608182|Ensembl:ENSG00000185774|HPRD:12184|Vega:OTTHUMG00000128557 4 4p15.32 Kv channel interacting protein 4 protein-coding KCNIP4 Kv channel interacting protein 4 O Kv channel-interacting protein 4|a-type potassium channel modulatory protein 4|calsenilin-like protein|potassium channel interacting protein 4|potassium channel-interacting protein 4 20121230 -9606 80335 WDR82 UNQ9342/PRO34047 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A HGNC:28826|MIM:611059|Ensembl:ENSG00000164091|HPRD:15183|Vega:OTTHUMG00000150391 3 3p21.2 WD repeat domain 82 protein-coding WDR82 WD repeat domain 82 O WD repeat-containing protein 82|transmembrane protein 113 20121230 -9606 80336 PABPC1L RP5-1069P2.6 C20orf119|PABPC1L1|dJ1069P2.3|ePAB HGNC:15797|Ensembl:ENSG00000101104|Vega:OTTHUMG00000032553 20 - poly(A) binding protein, cytoplasmic 1-like protein-coding PABPC1L poly(A) binding protein, cytoplasmic 1-like O polyadenylate-binding protein 1-like 20121230 -9606 80339 PNPLA3 RP4-796I17.1 ADPN|C22orf20|iPLA(2)epsilon HGNC:18590|MIM:609567|Ensembl:ENSG00000100344|HPRD:12430|Vega:OTTHUMG00000150555 22 22q13.31 patatin-like phospholipase domain containing 3 protein-coding PNPLA3 patatin-like phospholipase domain containing 3 O acylglycerol O-acyltransferase|adiponutrin|calcium-independent phospholipase A2-epsilon|iPLA2-epsilon|iPLA2epsilon|patatin-like phospholipase domain-containing protein 3 20121230 -9606 80341 BPIFB2 RP4-726C3.7 BPIL1|C20orf184|LPLUNC2|RYSR|dJ726C3.2 HGNC:16177|MIM:614108|Ensembl:ENSG00000078898|HPRD:10690|Vega:OTTHUMG00000032232 20 20q11.21 BPI fold containing family B, member 2 protein-coding BPIFB2 BPI fold containing family B, member 2 O BPI fold-containing family B member 2|BPI-like 1|bactericidal/permeability-increasing protein-like 1|long palate, lung and nasal epithelium carcinoma-associated protein 2 20121230 -9606 80342 TRAF3IP3 - DJ434O14.3|T3JAM HGNC:30766|MIM:608255|Ensembl:ENSG00000009790|HPRD:16305|Vega:OTTHUMG00000036480 1 1q32 TRAF3 interacting protein 3 protein-coding TRAF3IP3 TRAF3 interacting protein 3 O TRAF3 interacting Jun N terminal kinase (JNK) activating modulator|TRAF3-interacting JNK-activating modulator|TRAF3-interacting protein 3 20121230 -9606 80343 SEL1L2 RP5-842G6.1 C20orf50 HGNC:15897|MIM:614289|Ensembl:ENSG00000101251|Vega:OTTHUMG00000031910 20 20p12.1 sel-1 suppressor of lin-12-like 2 (C. elegans) protein-coding SEL1L2 sel-1 suppressor of lin-12-like 2 (C. elegans) O protein sel-1 homolog 2|sel-1L2|suppressor of lin-12-like protein 2 20121230 -9606 80344 DCAF11 GL014 PRO2389|WDR23 HGNC:20258|MIM:613317|Ensembl:ENSG00000100897|HPRD:18297|Vega:OTTHUMG00000028793 14 14q11.2 DDB1 and CUL4 associated factor 11 protein-coding DCAF11 DDB1 and CUL4 associated factor 11 O DDB1- and CUL4-associated factor 11|WD repeat domain 23|WD repeat-containing protein 23 20121230 -9606 80345 ZSCAN16 - ZNF392|ZNF435|dJ265C24.3 HGNC:20813|Ensembl:ENSG00000196812|HPRD:15792|Vega:OTTHUMG00000014509 6 6p22.1 zinc finger and SCAN domain containing 16 protein-coding ZSCAN16 zinc finger and SCAN domain containing 16 O zinc finger and SCAN domain-containing protein 16|zinc finger protein 392|zinc finger protein 435 20121230 -9606 80346 REEP4 PP432 C8orf20 HGNC:26176|MIM:609349|Ensembl:ENSG00000168476|HPRD:09864|Vega:OTTHUMG00000131491 8 8p21.3 receptor accessory protein 4 protein-coding REEP4 receptor accessory protein 4 O receptor expression enhancing protein 4|receptor expression-enhancing protein 4 20121230 -9606 80347 COASY PSEC0106 DPCK|NBP|PPAT|UKR1|pOV-2 HGNC:29932|MIM:609855|Ensembl:ENSG00000068120|HPRD:13080|Vega:OTTHUMG00000180245 17 17q12-q21 CoA synthase protein-coding COASY CoA synthase O bifunctional coenzyme A synthase|bifunctional phosphopantetheine adenylyl transferase/dephospho CoA kinase|nucleotide binding protein|phosphopantetheine adenylyltransferase / dephosphocoenzyme A kinase 20121230 -9606 80349 WDR61 - REC14|SKI8 HGNC:30300|MIM:609540|Ensembl:ENSG00000140395|HPRD:15236|Vega:OTTHUMG00000143735 15 15q25.1 WD repeat domain 61 protein-coding WDR61 WD repeat domain 61 O SKI8 homolog|WD repeat-containing protein 61|meiotic recombination REC14 protein homolog|recombination protein REC14 20121230 -9606 80350 LPAL2 - APOA2|APOAL|APOARGC|RP11-72O9.2 HGNC:21210|MIM:611682|HPRD:17441 6 6q26-q27 lipoprotein, Lp(a)-like 2, pseudogene pseudo LPAL2 lipoprotein, Lp(a)-like 2, pseudogene O - 20121230 -9606 80351 TNKS2 - ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 HGNC:15677|MIM:607128|Ensembl:ENSG00000107854|HPRD:06182|Vega:OTTHUMG00000018747 10 10q23.3 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 protein-coding TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 O ADP-ribosyltransferase diphtheria toxin-like 6|TNKS-2|TRF1-interacting ankyrin-related ADP-ribose polymerase 2|poly [ADP-ribose] polymerase 5B|tankyrase 2|tankyrase II|tankyrase-2|tankyrase-like protein|tankyrase-related protein 20121230 -9606 80352 RNF39 DADB-60O11.8 HZF|HZFW|LIRF HGNC:18064|MIM:607524|Ensembl:ENSG00000204618|HPRD:09600|Vega:OTTHUMG00000031288 6 6p21.3 ring finger protein 39 protein-coding RNF39 ring finger protein 39 O LTP (long-term potentiation) induced RING finger protein|RING finger protein 39|protein HZFw 20121230 -9606 80380 PDCD1LG2 - B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2 HGNC:18731|MIM:605723|Ensembl:ENSG00000197646|HPRD:16147|Vega:OTTHUMG00000019504 9 9p24.2 programmed cell death 1 ligand 2 protein-coding PDCD1LG2 programmed cell death 1 ligand 2 O B7 dendritic cell molecule|B7-DC|PD-1 ligand 2|PD-1-ligand 2|PDCD1 ligand 2|butyrophilin B7-DC|programmed death ligand 2 20121230 -9606 80381 CD276 PSEC0249 4Ig-B7-H3|B7-H3|B7H3|B7RP-2 HGNC:19137|MIM:605715|Ensembl:ENSG00000103855|HPRD:05756|Vega:OTTHUMG00000137585 15 15q23-q24 CD276 molecule protein-coding CD276 CD276 molecule O B7 homolog 3|CD276 antigen|costimulatory molecule 20121230 -9606 80699 CICP9 - bA291L22.4 HGNC:37758 10 10p11 capicua homolog (Drosophila) pseudogene 9 pseudo CICP9 capicua homolog (Drosophila) pseudogene 9 O - 20121230 -9606 80700 UBXN6 - UBXD1|UBXDC2 HGNC:14928|MIM:611946|Ensembl:ENSG00000167671|HPRD:18253|Vega:OTTHUMG00000181954 19 19p13 UBX domain protein 6 protein-coding UBXN6 UBX domain protein 6 O UBX domain containing 1|UBX domain-containing 1|UBX domain-containing 2|UBX domain-containing protein 1|UBX domain-containing protein 6 20121230 -9606 80701 AKR1D1P1 - AKR1D1P|SRD5BP1 HGNC:11288 1 1q24 aldo-keto reductase family 1, member D1 pseudogene 1 pseudo AKR1D1P1 aldo-keto reductase family 1, member D1 pseudogene 1 O - 20121230 -9606 80704 SLC19A3 - BBGD|THMD2|THTR2 HGNC:16266|MIM:606152|Ensembl:ENSG00000135917|HPRD:07311|Vega:OTTHUMG00000133185 2 2q37 solute carrier family 19, member 3 protein-coding SLC19A3 solute carrier family 19, member 3 O thTr-2|thiamine transporter 2 20121230 -9606 80705 TSGA10 - CEP4L|CT79 HGNC:14927|MIM:607166|Ensembl:ENSG00000135951|HPRD:06202|Vega:OTTHUMG00000130637 2 2q11.2 testis specific, 10 protein-coding TSGA10 testis specific, 10 O cancer/testis antigen 79|testis development protein NYD-SP7|testis-specific gene 10 protein 20121230 -9606 80709 AKNA RP11-82I1.4 - HGNC:24108|MIM:605729|Ensembl:ENSG00000106948|HPRD:16148|Vega:OTTHUMG00000020538 9 9q32 AT-hook transcription factor protein-coding AKNA AT-hook transcription factor O AKNA transcript F2|AT-hook transcription factor AKNA|AT-hook-containing transcription factor 20121230 -9606 80712 ESX1 RP3-513M9.1 ESX1L|ESXR1 HGNC:14865|MIM:300154|Ensembl:ENSG00000123576|HPRD:06503|HPRD:08945|Vega:OTTHUMG00000022125 X Xq22.1 ESX homeobox 1 protein-coding ESX1 ESX homeobox 1 O ESX1-related protein|extraembryonic, spermatogenesis, homeobox 1 homolog|homeobox protein ESX1 20121230 -9606 80713 MTIF2P1 - - HGNC:14861 1 1p11.2 mitochondrial translational initiation factor 2 pseudogene 1 pseudo MTIF2P1 mitochondrial translational initiation factor 2 pseudogene 1 O - 20121230 -9606 80714 PBX4 - - HGNC:13403|MIM:608127|Ensembl:ENSG00000105717|HPRD:16287|Vega:OTTHUMG00000172310 19 19p12 pre-B-cell leukemia homeobox 4 protein-coding PBX4 pre-B-cell leukemia homeobox 4 O homeobox protein PBX4|pre-B-cell leukemia transcription factor 4 20121230 -9606 80723 SLC35G2 - TMEM22 HGNC:28480|Ensembl:ENSG00000168917|HPRD:15532|Vega:OTTHUMG00000159787 3 3q22.3 solute carrier family 35, member G2 protein-coding SLC35G2 solute carrier family 35, member G2 O solute carrier family 35 member G2|transmembrane protein 22 20121230 -9606 80724 ACAD10 - - HGNC:21597|MIM:611181|Ensembl:ENSG00000111271|HPRD:10625|Vega:OTTHUMG00000169602 12 12q24.12 acyl-CoA dehydrogenase family, member 10 protein-coding ACAD10 acyl-CoA dehydrogenase family, member 10 O ACAD-10|acyl-CoA dehydrogenase family member 10|acyl-Coenzyme A dehydrogenase family, member 10 20121230 -9606 80725 SRCIN1 - P140|SNIP HGNC:29506|MIM:610786|Ensembl:ENSG00000017373|HPRD:11589|Vega:OTTHUMG00000178411 17 17q12 SRC kinase signaling inhibitor 1 protein-coding SRCIN1 SRC kinase signaling inhibitor 1 O P130Cas-associated protein|SNAP-25-interacting protein|SNAP25-interacting protein|p140Cap 20121230 -9606 80726 KIAA1683 - - HGNC:29350|Ensembl:ENSG00000130518|HPRD:13882 19 19p13.1 KIAA1683 protein-coding KIAA1683 KIAA1683 O uncharacterized protein KIAA1683 20121230 -9606 80727 TTYH3 - - HGNC:22222|MIM:608919|Ensembl:ENSG00000136295|HPRD:12333|Vega:OTTHUMG00000152050 7 7p22 tweety homolog 3 (Drosophila) protein-coding TTYH3 tweety homolog 3 (Drosophila) O hTTY3|protein tweety homolog 3 20121230 -9606 80728 ARHGAP39 - CrGAP|Vilse HGNC:29351|Ensembl:ENSG00000147799|HPRD:17224|Vega:OTTHUMG00000165182 8 8q24.3 Rho GTPase activating protein 39 protein-coding ARHGAP39 Rho GTPase activating protein 39 O RhoGAP93B homolog|crossGAP homolog|rho GTPase-activating protein 39 20121230 -9606 80731 THSD7B - - HGNC:29348|Ensembl:ENSG00000144229|Vega:OTTHUMG00000153590 2 2q22.1 thrombospondin, type I, domain containing 7B protein-coding THSD7B thrombospondin, type I, domain containing 7B O thrombospondin type-1 domain-containing protein 7B 20121230 -9606 80736 SLC44A4 DAAP-66K18.1 C6orf29|CTL4|NG22 HGNC:13941|MIM:606107|Ensembl:ENSG00000204385|HPRD:12087|Vega:OTTHUMG00000031133 6 6p21.3 solute carrier family 44, member 4 protein-coding SLC44A4 solute carrier family 44, member 4 O choline transporter-like protein 4 20121230 -9606 80737 VWA7 DAAP-21F2.1 C6orf27|G7c|NG37 HGNC:13939|MIM:609693|Ensembl:ENSG00000204396|HPRD:12880|Vega:OTTHUMG00000031132 6 6p21.33 von Willebrand factor A domain containing 7 protein-coding VWA7 von Willebrand factor A domain containing 7 O protein G7c|von Willebrand factor A domain-containing protein 7 20121230 -9606 80739 C6orf25 DADB-110M10.2 G6b|NG31 HGNC:13937|MIM:606520|Ensembl:ENSG00000204420|HPRD:09405|Vega:OTTHUMG00000031130 6 6p21.33 chromosome 6 open reading frame 25 protein-coding C6orf25 chromosome 6 open reading frame 25 O immunoglobulin receptor|protein G6b 20121230 -9606 80740 LY6G6C DADB-110M10.4 C6orf24|G6c|NG24 HGNC:13936|MIM:610435|Ensembl:ENSG00000204421|HPRD:14329|Vega:OTTHUMG00000031251 6 6p21.33 lymphocyte antigen 6 complex, locus G6C protein-coding LY6G6C lymphocyte antigen 6 complex, locus G6C O lymphocyte antigen 6 complex locus protein G6c|lymphocyte antigen-6 G6C 20121230 -9606 80741 LY6G5C DADB-127H9.6 C6orf20|G5C|LY6G5CA|LY6G5CB|NG33 HGNC:13932|MIM:610434|Ensembl:ENSG00000204428|HPRD:14328|Vega:OTTHUMG00000031228 6 6p21.33 lymphocyte antigen 6 complex, locus G5C protein-coding LY6G5C lymphocyte antigen 6 complex, locus G5C O lymphocyte antigen 6 complex locus protein G5c|lymphocyte antigen-6 G5C 20121230 -9606 80742 PRR3 DADB-87H23.3 CAT56 HGNC:21149|Ensembl:ENSG00000204576|HPRD:17915|Vega:OTTHUMG00000031037 6 6p21.33 proline rich 3 protein-coding PRR3 proline rich 3 O MHC class I region proline-rich protein CAT56|proline-rich polypeptide 3|proline-rich protein 3 20121230 -9606 80745 THUMPD2 - C2orf8 HGNC:14890|MIM:611751|Ensembl:ENSG00000138050|HPRD:15506|Vega:OTTHUMG00000102149 2 2p22.1|2p22-p21 THUMP domain containing 2 protein-coding THUMPD2 THUMP domain containing 2 O SAM-dependent methyltransferase|THUMP domain-containing protein 2 20121230 -9606 80746 TSEN2 - PCH2B|SEN2|SEN2L HGNC:28422|MIM:608753|Ensembl:ENSG00000154743|HPRD:10576|Vega:OTTHUMG00000129765 3 3p25.2 tRNA splicing endonuclease 2 homolog (S. cerevisiae) protein-coding TSEN2 tRNA splicing endonuclease 2 homolog (S. cerevisiae) O hsSen2|tRNA-intron endonuclease Sen2|tRNA-splicing endonuclease subunit Sen2 20121230 -9606 80755 AARSD1 - - HGNC:28417|MIM:613212|Ensembl:ENSG00000108825|HPRD:14524 17 17q21.31 alanyl-tRNA synthetase domain containing 1 protein-coding AARSD1 alanyl-tRNA synthetase domain containing 1 O alanyl-tRNA editing protein Aarsd1|alanyl-tRNA synthetase domain-containing protein 1 20121230 -9606 80757 TMEM121 - hole HGNC:20511|Ensembl:ENSG00000184986|HPRD:14652|Vega:OTTHUMG00000029912 14 14q32.33 transmembrane protein 121 protein-coding TMEM121 transmembrane protein 121 O hole 20121230 -9606 80758 PRR7 - - HGNC:28130|Ensembl:ENSG00000131188|HPRD:15186|Vega:OTTHUMG00000130861 5 5q35.3 proline rich 7 (synaptic) protein-coding PRR7 proline rich 7 (synaptic) O proline-rich protein 7|synaptic proline-rich membrane protein 20121230 -9606 80759 KHDC1 RP11-257K9.4 C6orf148|NDG1|bA257K9.4 HGNC:21366|MIM:611688|Ensembl:ENSG00000135314|HPRD:10790|Vega:OTTHUMG00000015030 6 6q13 KH homology domain containing 1 protein-coding KHDC1 KH homology domain containing 1 O KH homology domain-containing protein 1 20121230 -9606 80760 ITIH5 PP14776 ITI-HC5 HGNC:21449|MIM:609783|Ensembl:ENSG00000123243|HPRD:07865|HPRD:13747|Vega:OTTHUMG00000017635 10 10p14 inter-alpha-trypsin inhibitor heavy chain family, member 5 protein-coding ITIH5 inter-alpha-trypsin inhibitor heavy chain family, member 5 O ITI heavy chain H5|inter-alpha (globulin) inhibitor H5|inter-alpha-inhibitor heavy chain 5|inter-alpha-trypsin inhibitor heavy chain H5 20121230 -9606 80761 UPK3B - P35|UP3B|UPIIIB HGNC:21444|MIM:611887|Ensembl:ENSG00000243566|HPRD:15626|Vega:OTTHUMG00000149929 7 7q11.2 uroplakin 3B protein-coding UPK3B uroplakin 3B O uroplakin IIIb|uroplakin-3b 20121230 -9606 80762 NDFIP1 PSEC0192 N4WBP5 HGNC:17592|MIM:612050|Ensembl:ENSG00000131507|HPRD:14816|Vega:OTTHUMG00000129659 5 5q31.3 Nedd4 family interacting protein 1 protein-coding NDFIP1 Nedd4 family interacting protein 1 O NEDD4 family-interacting protein 1|Nedd4 WW domain-binding protein 5|breast cancer-associated protein SGA-1M|putative MAPK-activating protein PM13|putative NF-kappa-B-activating protein 164|putative NFKB and MAPK-activating protein 20121230 -9606 80763 C12orf39 - - HGNC:28139|Ensembl:ENSG00000134548|HPRD:14405|Vega:OTTHUMG00000169134 12 12p12.1 chromosome 12 open reading frame 39 protein-coding C12orf39 chromosome 12 open reading frame 39 O NPQ|neuropeptide Q|spexin 20121230 -9606 80764 THAP7 - - HGNC:23190|MIM:609518|Ensembl:ENSG00000184436|HPRD:15500|Vega:OTTHUMG00000150879 22 22q11.2 THAP domain containing 7 protein-coding THAP7 THAP domain containing 7 O THAP domain-containing protein 7 20121230 -9606 80765 STARD5 - - HGNC:18065|MIM:607050|Ensembl:ENSG00000172345|HPRD:09517|Vega:OTTHUMG00000147342 15 15q26 StAR-related lipid transfer (START) domain containing 5 protein-coding STARD5 StAR-related lipid transfer (START) domain containing 5 O START domain containing 5|START domain-containing protein 5|stAR-related lipid transfer protein 5 20121230 -9606 80767 MMDFS - - MIM:605711 - - Multiple mitochondrial dysfunctions syndrome unknown - - - - 20120711 -9606 80768 HMNJ - MNDJ MIM:605726 9 9p21.1-p12 Distal hereditary motor neuropathy, Jerash type unknown - - - - 20120622 -9606 80770 CCPSO - CCSSO MIM:605728 15 15q21-q22 Cataract, central pouch-like, with sutural opacities unknown - - - - 20120622 -9606 80771 MOPCB2 - MCOPCB2 MIM:605738 15 15q12-q15 Microphthalmia, colobomatous, 2 unknown - - - - 20120622 -9606 80772 GLTPD1 - - HGNC:28116|Ensembl:ENSG00000224051|Vega:OTTHUMG00000003171 1 1p36.33 glycolipid transfer protein domain containing 1 protein-coding GLTPD1 glycolipid transfer protein domain containing 1 O glycolipid transfer protein domain-containing protein 1 20121230 -9606 80774 LIMD2 SB143 - HGNC:28142|Ensembl:ENSG00000136490|HPRD:14407|Vega:OTTHUMG00000178907 17 17q23.3 LIM domain containing 2 protein-coding LIMD2 LIM domain containing 2 O LIM domain-containing protein 2 20121230 -9606 80775 TMEM177 - - HGNC:28143|Ensembl:ENSG00000144120|HPRD:14409|Vega:OTTHUMG00000153312 2 2q14.2 transmembrane protein 177 protein-coding TMEM177 transmembrane protein 177 O - 20121230 -9606 80776 B9D2 - ICIS-1|MKS10|MKSR2 HGNC:28636|MIM:611951|Ensembl:ENSG00000123810|HPRD:14613 19 19q13.2 B9 protein domain 2 protein-coding B9D2 B9 protein domain 2 O B9 domain-containing protein 2|MKS1-related protein 2|involved in cIlia stability-1 20121230 -9606 80777 CYB5B - CYB5-M|CYPB5M|OMB5 HGNC:24374|MIM:611964|Ensembl:ENSG00000103018|HPRD:13106|Vega:OTTHUMG00000133020 16 16q22.1 cytochrome b5 type B (outer mitochondrial membrane) protein-coding CYB5B cytochrome b5 type B (outer mitochondrial membrane) O cytochrome b5 outer mitochondrial membrane isoform|cytochrome b5 type B|outer mitochondrial membrane cytochrome b5|type 2 cyt-b5 20121230 -9606 80778 ZNF34 - KOX32 HGNC:13098|MIM:194526|Ensembl:ENSG00000196378|HPRD:11772|Vega:OTTHUMG00000165248 8 8q24.3 zinc finger protein 34 protein-coding ZNF34 zinc finger protein 34 O zinc finger protein 34 (KOX 32)|zinc finger protein KOX32 20121230 -9606 80781 COL18A1 - KNO|KNO1|KS HGNC:2195|MIM:120328|Ensembl:ENSG00000182871|HPRD:00382|Vega:OTTHUMG00000090407 21 21q22.3 collagen, type XVIII, alpha 1 protein-coding COL18A1 collagen, type XVIII, alpha 1 O antiangiogenic agent|collagen alpha-1(XVIII) chain|endostatin|multi-functional protein MFP 20121230 -9606 80789 INTS5 - INT5|KIAA1698 HGNC:29352|MIM:611349|Ensembl:ENSG00000185085|HPRD:13883|Vega:OTTHUMG00000167605 11 11q12.3 integrator complex subunit 5 protein-coding INTS5 integrator complex subunit 5 O - 20121230 -9606 80790 CMIP - TCMIP HGNC:24319|MIM:610112|Ensembl:ENSG00000153815|HPRD:10839|Vega:OTTHUMG00000176520 16 16q23 c-Maf inducing protein protein-coding CMIP c-Maf inducing protein O C-Maf-inducing protein|tc-Mip 20121230 -9606 80816 ASXL3 - KIAA1713 HGNC:29357|Ensembl:ENSG00000141431|Vega:OTTHUMG00000178395 18 18q11 additional sex combs like 3 (Drosophila) protein-coding ASXL3 additional sex combs like 3 (Drosophila) O additional sex combs-like protein 3|putative Polycomb group protein ASXL3 20121230 -9606 80817 CEP44 - KIAA1712|PS1TP3 HGNC:29356|Ensembl:ENSG00000164118|HPRD:13885|Vega:OTTHUMG00000160752 4 4q34 centrosomal protein 44kDa protein-coding CEP44 centrosomal protein 44kDa O HBV PreS1-transactivated protein 3|centrosomal protein of 44 kDa 20121230 -9606 80818 ZNF436 RP5-1057J7.3 ZNF|Zfp46 HGNC:20814|MIM:611703|Ensembl:ENSG00000125945|HPRD:15793|Vega:OTTHUMG00000003232 1 1p36 zinc finger protein 436 protein-coding ZNF436 zinc finger protein 436 O DNA-binding protein 20121230 -9606 80820 EEPD1 - HSPC107 HGNC:22223|Ensembl:ENSG00000122547|HPRD:13884|Vega:OTTHUMG00000154904 7 7p14.2 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 O endonuclease/exonuclease/phosphatase family domain-containing protein 1 20121230 -9606 80821 DDHD1 - PA-PLA1|PAPLA1|SPG28 HGNC:19714|MIM:614603|Ensembl:ENSG00000100523|HPRD:07482|Vega:OTTHUMG00000140305 14 14q21 DDHD domain containing 1 protein-coding DDHD1 DDHD domain containing 1 O DDHD domain-containing protein 1|phosphatidic acid-preferring phospholipase A1 homolog|phosphatidic acid-preferring phospholipase A1-like protein|phospholipase DDHD1|spastic paraplegia 28 (autosomal recessive) 20121230 -9606 80823 BHLHB9 RP4-769N13.5 p60TRP HGNC:29353|Ensembl:ENSG00000198908|HPRD:10028|Vega:OTTHUMG00000022060 X Xq23 basic helix-loop-helix domain containing, class B, 9 protein-coding BHLHB9 basic helix-loop-helix domain containing, class B, 9 O p60-like protein|protein BHLHb9|transcription regulator of 60 kDa 20121230 -9606 80824 DUSP16 - MKP-7|MKP7 HGNC:17909|MIM:607175|Ensembl:ENSG00000111266|HPRD:09525|Vega:OTTHUMG00000168582 12 12p13 dual specificity phosphatase 16 protein-coding DUSP16 dual specificity phosphatase 16 O MAP kinase phosphatase 7|MAPK phosphatase-7|dual specificity protein phosphatase 16|mitogen-activated protein kinase phosphatase 7 20121230 -9606 80829 ZFP91 FKSG11 DMS-8|DSM-8|PZF|ZFP-91|ZNF757 HGNC:14983|Ensembl:ENSG00000186660|Ensembl:ENSG00000255073|HPRD:11700|Vega:OTTHUMG00000137391|Vega:OTTHUMG00000166280 11 11q12 ZFP91 zinc finger protein protein-coding ZFP91 ZFP91 zinc finger protein O E3 ubiquitin-protein ligase ZFP91|drug resistance-associated sequence in melanoma 8|penta zinc finger protein|zinc finger protein 757|zinc finger protein 91 homolog|zinc finger protein homologous to Zfp91 in mouse 20121230 -9606 80830 APOL6 UNQ3095/PRO21341 APOL-VI|APOLVI HGNC:14870|MIM:607256|Ensembl:ENSG00000221963|HPRD:06266|Vega:OTTHUMG00000150615 22 22q12.3 apolipoprotein L, 6 protein-coding APOL6 apolipoprotein L, 6 O apolipoprotein L-VI|apolipoprotein L6 20121230 -9606 80831 APOL5 - APOL-V|APOLV HGNC:14869|MIM:607255|Ensembl:ENSG00000128313|HPRD:06265|Vega:OTTHUMG00000150588 22 22q12.3 apolipoprotein L, 5 protein-coding APOL5 apolipoprotein L, 5 O apolipoprotein L-V|apolipoprotein L5 20121230 -9606 80832 APOL4 CTA-212A2.2 APOL-IV|APOLIV HGNC:14867|MIM:607254|Ensembl:ENSG00000100336|HPRD:16237|Vega:OTTHUMG00000150630 22 22q11.2-q13.2 apolipoprotein L, 4 protein-coding APOL4 apolipoprotein L, 4 O apolipoprotein L-IV|apolipoprotein L4 20121230 -9606 80833 APOL3 - APOLIII|CG121 HGNC:14868|MIM:607253|Ensembl:ENSG00000128284|HPRD:06264|Vega:OTTHUMG00000150632 22 22q13.1 apolipoprotein L, 3 protein-coding APOL3 apolipoprotein L, 3 O CG12_1|TNF-inducible protein CG12-1|apoL-III|apolipoprotein L-III|apolipoprotein L3 20121230 -9606 80834 TAS1R2 - GPR71|T1R2|TR2 HGNC:14905|MIM:606226|Ensembl:ENSG00000179002|HPRD:06940|Vega:OTTHUMG00000002442 1 1p36.13 taste receptor, type 1, member 2 protein-coding TAS1R2 taste receptor, type 1, member 2 O G protein-coupled receptor 71|G-protein coupled receptor 71|sweet taste receptor T1R2|taste receptor type 1 member 2 20121230 -9606 80835 TAS1R1 GM148 GPR70|T1R1|TR1 HGNC:14448|MIM:606225|Ensembl:ENSG00000173662|HPRD:06939|Vega:OTTHUMG00000001441 1 1p36.23 taste receptor, type 1, member 1 protein-coding TAS1R1 taste receptor, type 1, member 1 O G protein-coupled receptor 70|G-protein coupled receptor 70|seven transmembrane helix receptor|taste receptor type 1 member 1 20121230 -9606 80851 SH3BP5L UNQ2766/PRO7133 - HGNC:29360|Ensembl:ENSG00000175137|HPRD:13887|Vega:OTTHUMG00000040389 1 1q44 SH3-binding domain protein 5-like protein-coding SH3BP5L SH3-binding domain protein 5-like O SH3 domain-binding protein 5-like|SH3BP-5-like 20121230 -9606 80852 GRIP2 - - HGNC:23841 3 3p24-p23 glutamate receptor interacting protein 2 protein-coding GRIP2 glutamate receptor interacting protein 2 O GRIP-2|glutamate receptor-interacting protein 2 20121230 -9606 80853 JHDM1D - KDM7A HGNC:22224|Ensembl:ENSG00000006459|Vega:OTTHUMG00000157327 7 7q34 jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) protein-coding JHDM1D jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) O histone lysine demethylase JHDM1D|jmjC domain-containing histone demethylation protein 1D|jumonji C domain-containing histone demethylase 1 homolog D|lysine-specific demethylase 7 20121230 -9606 80854 SETD7 - KMT7|SET7|SET7/9|SET9 HGNC:30412|MIM:606594|Ensembl:ENSG00000145391|HPRD:16226|Vega:OTTHUMG00000133385 4 4q28 SET domain containing (lysine methyltransferase) 7 protein-coding SETD7 SET domain containing (lysine methyltransferase) 7 O H3-K4-HMTase SETD7|SET domain-containing protein 7|histone H3-K4 methyltransferase SETD7|histone H3-lysine 4-specific methyltransferase|histone-lysine N-methyltransferase SETD7|lysine N-methyltransferase 7 20121230 -9606 80856 KIAA1715 - LNP|Ul|ulnaless HGNC:21610|MIM:610236|Ensembl:ENSG00000144320|HPRD:13886|Vega:OTTHUMG00000154112 2 2q31 KIAA1715 protein-coding KIAA1715 KIAA1715 O 2310011O18Rik|4921514L11Rik|Lunapark|protein lunapark 20121230 -9606 80862 ZNRD1-AS1 - C6orf12|HTEX4|NCRNA00171|ZNRD1-AS|ZNRD1AS HGNC:13924 6 6p22.1 ZNRD1 antisense RNA 1 miscRNA ZNRD1-AS1 ZNRD1 antisense RNA 1 O - 20121230 -9606 80863 PRRT1 DAAP-218M18.1 C6orf31|DSPD1|IFITMD7|NG5 HGNC:13943|Ensembl:ENSG00000204314|HPRD:10794|Vega:OTTHUMG00000031144 6 6p21.32 proline-rich transmembrane protein 1 protein-coding PRRT1 proline-rich transmembrane protein 1 O dispanin subfamily D member 1|interferon induced transmembrane protein domain containing 7 20121230 -9606 80864 EGFL8 DAAP-218M18.3 C6orf8|NG3 HGNC:13944|MIM:609897|Ensembl:ENSG00000241404|Ensembl:ENSG00000258388|HPRD:16854|Vega:OTTHUMG00000031222 6 6p21.32 EGF-like-domain, multiple 8 protein-coding EGFL8 EGF-like-domain, multiple 8 O EGF-like protein 8|VE-statin-2|epidermal growth factor-like protein 8|vascular endothelial statin-2 20121230 -9606 80868 HCG4B - HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3 HGNC:22919 6 6p21.3 HLA complex group 4B (non-protein coding) miscRNA HCG4B HLA complex group 4B (non-protein coding) O - 20121230 -9606 80870 DKBI - - MIM:127600 4 4q35 Dyskeratosis, hereditary benign intraepithelial unknown - - - - 20121208 -9606 80871 ANMA - - MIM:605746 16 16q13-q21 Anisomastia unknown - - - - 20120622 -9606 80895 ILKAP - ILKAP2|ILKAP3|PP2C-DELTA HGNC:15566|Ensembl:ENSG00000132323|HPRD:17147|Vega:OTTHUMG00000133334 2 2q37.3 integrin-linked kinase-associated serine/threonine phosphatase protein-coding ILKAP integrin-linked kinase-associated serine/threonine phosphatase O integrin-linked kinase associated phosphatase|integrin-linked kinase-associated serine/threonine phosphatase 2C|protein phosphatase 2c, delta isozyme 20121230 -9606 80896 NPL RP11-249O6.1 C112|C1orf13|NAL|NPL1 HGNC:16781|MIM:611412|Ensembl:ENSG00000135838|HPRD:14836|Vega:OTTHUMG00000035321 1 1q25 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) protein-coding NPL N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) O N-acetylneuraminate lyase|N-acetylneuraminic acid aldolase|NALase|dihydrodipicolinate synthetase homolog 1|sialate-pyruvate lyase|sialic acid aldolase 20121230 -9606 80975 TMPRSS5 - SPINESIN HGNC:14908|MIM:606751|Ensembl:ENSG00000166682|HPRD:05995|Vega:OTTHUMG00000168186 11 11q transmembrane protease, serine 5 protein-coding TMPRSS5 transmembrane protease, serine 5 O transmembrane protease serine 5 20121230 -9606 81025 GJA9 RP5-864K19.2 CX58|CX59|GJA10 HGNC:19155|MIM:611923|Ensembl:ENSG00000131233|HPRD:13578 1 1p34 gap junction protein, alpha 9, 59kDa protein-coding GJA9 gap junction protein, alpha 9, 59kDa O connexin 59|connexin-58|gap junction alpha 10|gap junction alpha-9 protein 20121230 -9606 81027 TUBB1 - - HGNC:16257|MIM:612901|Ensembl:ENSG00000101162|HPRD:18243|Vega:OTTHUMG00000032860 20 20q13.32 tubulin, beta 1 class VI protein-coding TUBB1 tubulin, beta 1 class VI O beta tubulin 1, class VI|class VI beta-tubulin|tubulin beta-1 chain 20121230 -9606 81029 WNT5B - - HGNC:16265|MIM:606361|Ensembl:ENSG00000111186|HPRD:05899|Vega:OTTHUMG00000090375 12 12p13.3 wingless-type MMTV integration site family, member 5B protein-coding WNT5B wingless-type MMTV integration site family, member 5B O WNT-5B protein|protein Wnt-5b 20121230 -9606 81030 ZBP1 RP4-718J7.1 C20orf183|DAI|DLM-1|DLM1 HGNC:16176|MIM:606750|Ensembl:ENSG00000124256|HPRD:09484|Vega:OTTHUMG00000032824 20 20q13.31 Z-DNA binding protein 1 protein-coding ZBP1 Z-DNA binding protein 1 O DNA-dependent activator of IFN-regulatory factors|DNA-dependent activator of IRFs|DNA-dependent activator of interferon regulatory factors|Z-DNA-binding protein 1|tumor stroma and activated macrophage protein DLM-1 20121230 -9606 81031 SLC2A10 - ATS|GLUT10 HGNC:13444|MIM:606145|Ensembl:ENSG00000197496|HPRD:05851|Vega:OTTHUMG00000032657 20 20q13.1 solute carrier family 2 (facilitated glucose transporter), member 10 protein-coding SLC2A10 solute carrier family 2 (facilitated glucose transporter), member 10 O GLUT-10|glucose transporter type 10|solute carrier family 2, facilitated glucose transporter member 10 20121230 -9606 81033 KCNH6 - ERG2|HERG2|Kv11.2 HGNC:18862|MIM:608168|Ensembl:ENSG00000173826|HPRD:16294|Vega:OTTHUMG00000178901 17 17q23.3 potassium voltage-gated channel, subfamily H (eag-related), member 6 protein-coding KCNH6 potassium voltage-gated channel, subfamily H (eag-related), member 6 O ERG-2|eag related protein 2|eag-related gene member 2|eag-related protein 2|ether-a-go-go related gene potassium channel 2|ether-a-go-go-related gene potassium channel 2|ether-a-go-go-related protein 2|hERG-2|potassium voltage-gated channel subfamily H member 6|voltage-gated potassium channel subunit Kv11.2 20121230 -9606 81034 SLC25A32 - MFT|MFTC HGNC:29683|MIM:610815|Ensembl:ENSG00000164933|HPRD:11301|Vega:OTTHUMG00000164790 8 8q22.3 solute carrier family 25 (mitochondrial folate carrier) , member 32 protein-coding SLC25A32 solute carrier family 25 (mitochondrial folate carrier) , member 32 O mitochondrial folate transporter/carrier|solute carrier family 25, member 32 20121230 -9606 81035 COLEC12 - CLP1|NSR2|SCARA4|SRCL HGNC:16016|MIM:607621|Ensembl:ENSG00000158270|HPRD:06358|Vega:OTTHUMG00000178145 18 18pter-p11.3 collectin sub-family member 12 protein-coding COLEC12 collectin sub-family member 12 O collectin placenta protein 1|collectin-12|hCL-P1|nurse cell scavenger receptor 2|scavenger receptor class A, member 4|scavenger receptor with C-type lectin 20121230 -9606 81037 CLPTM1L - CRR9 HGNC:24308|MIM:612585|Ensembl:ENSG00000049656|HPRD:07480|Vega:OTTHUMG00000131015 5 5p15.33 CLPTM1-like protein-coding CLPTM1L CLPTM1-like O CLPTM1-like protein|CRR9p|cisplatin resistance related protein CRR9p|cisplatin resistance-related protein 9|cleft lip and palate transmembrane protein 1-like protein 20121230 -9606 81047 OR5BJ1P - OST740 HGNC:15434 12 12q13.11 olfactory receptor, family 5, subfamily BJ, member 1 pseudogene pseudo OR5BJ1P olfactory receptor, family 5, subfamily BJ, member 1 pseudogene O - 20121230 -9606 81050 OR5AC2 - HSA1 HGNC:15431|Ensembl:ENSG00000196578|HPRD:15030|Vega:OTTHUMG00000160083 3 3q12.1 olfactory receptor, family 5, subfamily AC, member 2 protein-coding OR5AC2 olfactory receptor, family 5, subfamily AC, member 2 O olfactory receptor 5AC2 20121230 -9606 81061 OR11H1 - OR22-1 HGNC:15404|HPRD:14901 22 22q11.2 olfactory receptor, family 11, subfamily H, member 1 protein-coding OR11H1 olfactory receptor, family 11, subfamily H, member 1 O olfactory receptor 11H1|olfactory receptor OR22-1|seven transmembrane helix receptor 20121230 -9606 81075 OR5BH1P - OR5BH2P HGNC:15407 X Xq26.2 olfactory receptor, family 5, subfamily BH, member 1 pseudogene pseudo OR5BH1P olfactory receptor, family 5, subfamily BH, member 1 pseudogene O - 20121230 -9606 81076 OR5AW1P - - HGNC:15406 X Xq26.2 olfactory receptor, family 5, subfamily AW, member 1 pseudogene pseudo OR5AW1P olfactory receptor, family 5, subfamily AW, member 1 pseudogene O - 20121230 -9606 81077 OR4W1P - - HGNC:15405 X Xq25 olfactory receptor, family 4, subfamily W, member 1 pseudogene pseudo OR4W1P olfactory receptor, family 4, subfamily W, member 1 pseudogene O - 20121230 -9606 81078 OR4K12P - OR21-2 HGNC:15403 21 21q11.1 olfactory receptor, family 4, subfamily K, member 12 pseudogene pseudo OR4K12P olfactory receptor, family 4, subfamily K, member 12 pseudogene O - 20121230 -9606 81079 OR4K11P - OR21-1 HGNC:15402 21 21q11.1 olfactory receptor, family 4, subfamily K, member 11 pseudogene pseudo OR4K11P olfactory receptor, family 4, subfamily K, member 11 pseudogene O - 20121230 -9606 81081 OR7A18P - - HGNC:15399 19 19p13.12 olfactory receptor, family 7, subfamily A, member 18 pseudogene pseudo OR7A18P olfactory receptor, family 7, subfamily A, member 18 pseudogene O - 20121230 -9606 81090 OR1AB1P - - HGNC:15390 19 19p13.12 olfactory receptor, family 1, subfamily AB, member 1 pseudogene pseudo OR1AB1P olfactory receptor, family 1, subfamily AB, member 1 pseudogene O - 20121230 -9606 81099 OR4F17 - OR4F11P|OR4F18|OR4F19 HGNC:15381|HPRD:14970 19 19p13.3 olfactory receptor, family 4, subfamily F, member 17 protein-coding OR4F17 olfactory receptor, family 4, subfamily F, member 17 O olfactory receptor 4F11|olfactory receptor 4F17|olfactory receptor 4F18|olfactory receptor 4F19|olfactory receptor, family 4, subfamily F, member 11 pseudogene|olfactory receptor, family 4, subfamily F, member 19 20121230 -9606 81104 OR4Q1P - - HGNC:15376 15 15q11.2 olfactory receptor, family 4, subfamily Q, member 1 pseudogene pseudo OR4Q1P olfactory receptor, family 4, subfamily Q, member 1 pseudogene O - 20121230 -9606 81109 OR11K1P - - HGNC:15371 15 15q11.2 olfactory receptor, family 11, subfamily K, member 1 pseudogene pseudo OR11K1P olfactory receptor, family 11, subfamily K, member 1 pseudogene O uncharacterized protein LOC100288919 20121230 -9606 81110 OR11J2P - - HGNC:15370 15 15q11.2 olfactory receptor, family 11, subfamily J, member 2 pseudogene pseudo OR11J2P olfactory receptor, family 11, subfamily J, member 2 pseudogene O - 20121230 -9606 81111 OR11J1P - - HGNC:15369 15 15q11.2 olfactory receptor, family 11, subfamily J, member 1 pseudogene pseudo OR11J1P olfactory receptor, family 11, subfamily J, member 1 pseudogene O - 20121230 -9606 81113 OR11H3P - - HGNC:15367 15 15q11.2 olfactory receptor, family 11, subfamily H, member 3 pseudogene pseudo OR11H3P olfactory receptor, family 11, subfamily H, member 3 pseudogene O - 20121230 -9606 81114 OR7K1P - - HGNC:15366 14 14q12 olfactory receptor, family 7, subfamily K, member 1 pseudogene pseudo OR7K1P olfactory receptor, family 7, subfamily K, member 1 pseudogene O - 20121230 -9606 81115 OR7E106P - OR14-NP2|OR7E34P|OR7E40P|OST011|OST215 HGNC:15365 14 14q21 olfactory receptor, family 7, subfamily E, member 106 pseudogene pseudo OR7E106P olfactory receptor, family 7, subfamily E, member 106 pseudogene O - 20121230 -9606 81116 OR7E105P - OR14-NP1 HGNC:15364 14 14q21 olfactory receptor, family 7, subfamily E, member 105 pseudogene pseudo OR7E105P olfactory receptor, family 7, subfamily E, member 105 pseudogene O - 20121230 -9606 81126 OR4K16P - OR14-24 HGNC:15354 14 14q11.2 olfactory receptor, family 4, subfamily K, member 16 pseudogene pseudo OR4K16P olfactory receptor, family 4, subfamily K, member 16 pseudogene O - 20121230 -9606 81127 OR4K15 - OR14-20|OR4K15Q HGNC:15353|Ensembl:ENSG00000169488|HPRD:14978|Vega:OTTHUMG00000170635 14 14q11.2 olfactory receptor, family 4, subfamily K, member 15 protein-coding OR4K15 olfactory receptor, family 4, subfamily K, member 15 O olfactory receptor 4K15|olfactory receptor OR14-20 20121230 -9606 81136 OR7E111P - - HGNC:15344 13 13q21.32 olfactory receptor, family 7, subfamily E, member 111 pseudogene pseudo OR7E111P olfactory receptor, family 7, subfamily E, member 111 pseudogene O - 20121230 -9606 81137 OR7E104P - - HGNC:15343 13 13q21.31 olfactory receptor, family 7, subfamily E, member 104 pseudogene pseudo OR7E104P olfactory receptor, family 7, subfamily E, member 104 pseudogene O - 20121230 -9606 81138 OR7E101P - - HGNC:15342 13 13q14.13 olfactory receptor, family 7, subfamily E, member 101 pseudogene pseudo OR7E101P olfactory receptor, family 7, subfamily E, member 101 pseudogene O - 20121230 -9606 81140 OR9R1P - - HGNC:15340 12 12q13.2 olfactory receptor, family 9, subfamily R, member 1 pseudogene pseudo OR9R1P olfactory receptor, family 9, subfamily R, member 1 pseudogene O - 20121230 -9606 81153 OR9M1P - OR5BG1P HGNC:15327 11 11q11 olfactory receptor, family 9, subfamily M, member 1, pseudogene pseudo OR9M1P olfactory receptor, family 9, subfamily M, member 1, pseudogene O - 20121230 -9606 81155 OR9I3P - OST714 HGNC:15325 11 11q12.1 olfactory receptor, family 9, subfamily I, member 3 pseudogene pseudo OR9I3P olfactory receptor, family 9, subfamily I, member 3 pseudogene O - 20121230 -9606 81156 OR9I2P - - HGNC:15324 11 11q12.1 olfactory receptor, family 9, subfamily I, member 2 pseudogene pseudo OR9I2P olfactory receptor, family 9, subfamily I, member 2 pseudogene O - 20121230 -9606 81159 OR9G3P - - HGNC:15321 11 11q12.1 olfactory receptor, family 9, subfamily G, member 3 pseudogene pseudo OR9G3P olfactory receptor, family 9, subfamily G, member 3 pseudogene O - 20121230 -9606 81160 OR9G2P - OR9G6 HGNC:15320 11 11q12.1 olfactory receptor, family 9, subfamily G, member 2 pseudogene pseudo OR9G2P olfactory receptor, family 9, subfamily G, member 2 pseudogene O - 20121230 -9606 81162 OR8R1P - - HGNC:15318 11 11q13.4 olfactory receptor, family 8, subfamily R, member 1 pseudogene pseudo OR8R1P olfactory receptor, family 8, subfamily R, member 1 pseudogene O - 20121230 -9606 81163 OR8Q1P - - HGNC:15317 11 11q24.2 olfactory receptor, family 8, subfamily Q, member 1 pseudogene pseudo OR8Q1P olfactory receptor, family 8, subfamily Q, member 1 pseudogene O - 20121230 -9606 81164 OR8L1P - OR11-115 HGNC:15316 11 11q12.1 olfactory receptor, family 8, subfamily L, member 1 pseudogene pseudo OR8L1P olfactory receptor, family 8, subfamily L, member 1 pseudogene O - 20121230 -9606 81166 OR8K4P - - HGNC:15314 11 11q12.1 olfactory receptor, family 8, subfamily K, member 4 pseudogene pseudo OR8K4P olfactory receptor, family 8, subfamily K, member 4 pseudogene O - 20121230 -9606 81168 OR8J3 - OR11-173 HGNC:15312|Ensembl:ENSG00000167822|HPRD:15085|Vega:OTTHUMG00000166834 11 11q12.1 olfactory receptor, family 8, subfamily J, member 3 protein-coding OR8J3 olfactory receptor, family 8, subfamily J, member 3 O olfactory receptor 8J3|olfactory receptor OR11-173 20121230 -9606 81169 OR8J2 - OR8J2P HGNC:15311 11 11q12.1 olfactory receptor, family 8, subfamily J, member 2 (gene/pseudogene) pseudo OR8J2 olfactory receptor, family 8, subfamily J, member 2 (gene/pseudogene) O - 20121230 -9606 81175 OR7E128P - - HGNC:15305 11 11q13.4 olfactory receptor, family 7, subfamily E, member 128 pseudogene pseudo OR7E128P olfactory receptor, family 7, subfamily E, member 128 pseudogene O - 20121230 -9606 81176 OR7E126P - OR11-1|hg500 HGNC:15304 11 11q13.4 olfactory receptor, family 7, subfamily E, member 126 pseudogene pseudo OR7E126P olfactory receptor, family 7, subfamily E, member 126 pseudogene O - 20121230 -9606 81182 OR5W1P - OR11-144 HGNC:15298 11 11q11 olfactory receptor, family 5, subfamily W, member 1 pseudogene pseudo OR5W1P olfactory receptor, family 5, subfamily W, member 1 pseudogene O - 20121230 -9606 81185 OR5P4P - OST730 HGNC:15295 11 11p15.4 olfactory receptor, family 5, subfamily P, member 4 pseudogene pseudo OR5P4P olfactory receptor, family 5, subfamily P, member 4 pseudogene O - 20121230 -9606 81187 OR5M13P - - HGNC:15293 11 11q12.1 olfactory receptor, family 5, subfamily M, member 13 pseudogene pseudo OR5M13P olfactory receptor, family 5, subfamily M, member 13 pseudogene O - 20121230 -9606 81188 OR5M12P - - HGNC:15292 11 11q12.1 olfactory receptor, family 5, subfamily M, member 12 pseudogene pseudo OR5M12P olfactory receptor, family 5, subfamily M, member 12 pseudogene O - 20121230 -9606 81191 OR5G5P - - HGNC:15289 11 11q12.1 olfactory receptor, family 5, subfamily G, member 5 pseudogene pseudo OR5G5P olfactory receptor, family 5, subfamily G, member 5 pseudogene O - 20121230 -9606 81192 OR5G4P - - HGNC:15288 11 11q12.1 olfactory receptor, family 5, subfamily G, member 4 pseudogene pseudo OR5G4P olfactory receptor, family 5, subfamily G, member 4 pseudogene O - 20121230 -9606 81193 OR5G3 - OR5G3P|OR5G6P HGNC:15287 11 11q12.1 olfactory receptor, family 5, subfamily G, member 3 (gene/pseudogene) pseudo OR5G3 olfactory receptor, family 5, subfamily G, member 3 (gene/pseudogene) O - 20121230 -9606 81194 OR5F2P - - HGNC:15286 11 11q12.1 olfactory receptor, family 5, subfamily F, member 2 pseudogene pseudo OR5F2P olfactory receptor, family 5, subfamily F, member 2 pseudogene O - 20121230 -9606 81196 OR5D17P - - HGNC:15284 11 11q11 olfactory receptor, family 5, subfamily D, member 17 pseudogene pseudo OR5D17P olfactory receptor, family 5, subfamily D, member 17 pseudogene O - 20121230 -9606 81198 OR5D15P - - HGNC:15282 11 11q11 olfactory receptor, family 5, subfamily D, member 15 pseudogene pseudo OR5D15P olfactory receptor, family 5, subfamily D, member 15 pseudogene O - 20121230 -9606 81201 OR5BR1P - - HGNC:15279 11 11q12.1 olfactory receptor, family 5, subfamily BR, member 1 pseudogene pseudo OR5BR1P olfactory receptor, family 5, subfamily BR, member 1 pseudogene O - 20121230 -9606 81202 OR5BQ1P - OR5BQ2P HGNC:15278 11 11q12.1 olfactory receptor, family 5, subfamily BQ, member 1 pseudogene pseudo OR5BQ1P olfactory receptor, family 5, subfamily BQ, member 1 pseudogene O - 20121230 -9606 81203 OR5BP1P - - HGNC:15277 11 11q12.1 olfactory receptor, family 5, subfamily BP, member 1 pseudogene pseudo OR5BP1P olfactory receptor, family 5, subfamily BP, member 1 pseudogene O - 20121230 -9606 81204 OR5BN1P - OR11-161 HGNC:15276 11 11q12.1 olfactory receptor, family 5, subfamily BN, member 1 pseudogene pseudo OR5BN1P olfactory receptor, family 5, subfamily BN, member 1 pseudogene O - 20121230 -9606 81205 OR5BL1P - - HGNC:15275 11 11q12.1 olfactory receptor, family 5, subfamily BL, member 1 pseudogene pseudo OR5BL1P olfactory receptor, family 5, subfamily BL, member 1 pseudogene O - 20121230 -9606 81207 OR5BE1P - - HGNC:15273 11 11q12.1 olfactory receptor, family 5, subfamily BE, member 1 pseudogene pseudo OR5BE1P olfactory receptor, family 5, subfamily BE, member 1 pseudogene O - 20121230 -9606 81208 OR5BC1P - - HGNC:15272 11 11q12.1 olfactory receptor, family 5, subfamily BC, member 1 pseudogene pseudo OR5BC1P olfactory receptor, family 5, subfamily BC, member 1 pseudogene O - 20121230 -9606 81209 OR5BB1P - - HGNC:15271 11 11q12.1 olfactory receptor, family 5, subfamily BB, member 1 pseudogene pseudo OR5BB1P olfactory receptor, family 5, subfamily BB, member 1 pseudogene O - 20121230 -9606 81210 OR5BA1P - - HGNC:15270 11 11q12.1 olfactory receptor, family 5, subfamily BA, member 1 pseudogene pseudo OR5BA1P olfactory receptor, family 5, subfamily BA, member 1 pseudogene O - 20121230 -9606 81211 OR5B19P - - HGNC:15269 11 11q12.1 olfactory receptor, family 5, subfamily B, member 19 pseudogene pseudo OR5B19P olfactory receptor, family 5, subfamily B, member 19 pseudogene O - 20121230 -9606 81215 OR5B15P - - HGNC:15265 11 11q12.1 olfactory receptor, family 5, subfamily B, member 15 pseudogene pseudo OR5B15P olfactory receptor, family 5, subfamily B, member 15 pseudogene O - 20121230 -9606 81221 OR5AQ1P - OR11-165 HGNC:15259 11 11q12.1 olfactory receptor, family 5, subfamily AQ, member 1 pseudogene pseudo OR5AQ1P olfactory receptor, family 5, subfamily AQ, member 1 pseudogene O - 20121230 -9606 81223 OR5AP1P - - HGNC:15257 11 11q12.1 olfactory receptor, family 5, subfamily AP, member 1 pseudogene pseudo OR5AP1P olfactory receptor, family 5, subfamily AP, member 1 pseudogene O - 20121230 -9606 81224 OR5AN2P - - HGNC:15256 11 11q12.1 olfactory receptor, family 5, subfamily AN, member 2 pseudogene pseudo OR5AN2P olfactory receptor, family 5, subfamily AN, member 2 pseudogene O - 20121230 -9606 81226 OR5AM1P - - HGNC:15254 11 11q12.1 olfactory receptor, family 5, subfamily AM, member 1 pseudogene pseudo OR5AM1P olfactory receptor, family 5, subfamily AM, member 1 pseudogene O - 20121230 -9606 81228 OR5AK3P - OR5AK3 HGNC:15252 11 11q12.1 olfactory receptor, family 5, subfamily AK, member 3 pseudogene pseudo OR5AK3P olfactory receptor, family 5, subfamily AK, member 3 pseudogene O - 20121230 -9606 81230 OR5AK1P - OR5AK5P HGNC:15250 11 11q12.1 olfactory receptor, family 5, subfamily AK, member 1 pseudogene pseudo OR5AK1P olfactory receptor, family 5, subfamily AK, member 1 pseudogene O - 20121230 -9606 81236 OR56A7P - - HGNC:15244 11 11p15.4 olfactory receptor, family 56, subfamily A, member 7 pseudogene pseudo OR56A7P olfactory receptor, family 56, subfamily A, member 7 pseudogene O - 20121230 -9606 81240 OR52Y1P - OR52Y2P HGNC:15240 11 11p15.4 olfactory receptor, family 52, subfamily Y, member 1 pseudogene pseudo OR52Y1P olfactory receptor, family 52, subfamily Y, member 1 pseudogene O - 20121230 -9606 81242 OR52V1P - - HGNC:15238 11 11p15.4 olfactory receptor, family 52, subfamily V, member 1 pseudogene pseudo OR52V1P olfactory receptor, family 52, subfamily V, member 1 pseudogene O - 20121230 -9606 81243 OR52U1P - - HGNC:15237 11 11p15.4 olfactory receptor, family 52, subfamily U, member 1 pseudogene pseudo OR52U1P olfactory receptor, family 52, subfamily U, member 1 pseudogene O - 20121230 -9606 81244 OR52T1P - - HGNC:15236 11 11p15.4 olfactory receptor, family 52, subfamily T, member 1 pseudogene pseudo OR52T1P olfactory receptor, family 52, subfamily T, member 1 pseudogene O - 20121230 -9606 81246 OR52Q1P - - HGNC:15234 11 11p15.4 olfactory receptor, family 52, subfamily Q, member 1 pseudogene pseudo OR52Q1P olfactory receptor, family 52, subfamily Q, member 1 pseudogene O - 20121230 -9606 81248 OR52P1P - OR11-66|OR52P1 HGNC:15232 11 11p15.4 olfactory receptor, family 52, subfamily P, member 1 pseudogene pseudo OR52P1P olfactory receptor, family 52, subfamily P, member 1 pseudogene O - 20121230 -9606 81251 OR52N3P - OR11-60 HGNC:15229 11 11p15.4 olfactory receptor, family 52, subfamily N, member 3 pseudogene pseudo OR52N3P olfactory receptor, family 52, subfamily N, member 3 pseudogene O - 20121230 -9606 81261 OR52H2P - - HGNC:15219 11 11p15.4 olfactory receptor, family 52, subfamily H, member 2 pseudogene pseudo OR52H2P olfactory receptor, family 52, subfamily H, member 2 pseudogene O - 20121230 -9606 81264 OR52E7P - - HGNC:15216 11 11p15.4 olfactory receptor, family 52, subfamily E, member 7 pseudogene pseudo OR52E7P olfactory receptor, family 52, subfamily E, member 7 pseudogene O - 20121230 -9606 81270 OR52B5P - - HGNC:15210 11 11p15.4 olfactory receptor, family 52, subfamily B, member 5 pseudogene pseudo OR52B5P olfactory receptor, family 52, subfamily B, member 5 pseudogene O - 20121230 -9606 81274 OR52B1P - - HGNC:15206 11 11p15.4 olfactory receptor, family 52, subfamily B, member 1 pseudogene pseudo OR52B1P olfactory receptor, family 52, subfamily B, member 1 pseudogene O - 20121230 -9606 81278 OR51K1P - - HGNC:15202 11 11p15.4 olfactory receptor, family 51, subfamily K, member 1 pseudogene pseudo OR51K1P olfactory receptor, family 51, subfamily K, member 1 pseudogene O - 20121230 -9606 81282 OR51G2 - OR11-28 HGNC:15198|Ensembl:ENSG00000176893|HPRD:14998|Vega:OTTHUMG00000066501 11 11p15.4 olfactory receptor, family 51, subfamily G, member 2 protein-coding OR51G2 olfactory receptor, family 51, subfamily G, member 2 O olfactory receptor 51G2|olfactory receptor OR11-28 20121230 -9606 81285 OR51E2 hCG_2044604 OR51E3P|OR52A2|PSGR HGNC:15195|MIM:611268|Ensembl:ENSG00000167332|HPRD:17736|Vega:OTTHUMG00000133362 11 11p15 olfactory receptor, family 51, subfamily E, member 2 protein-coding OR51E2 olfactory receptor, family 51, subfamily E, member 2 O HPRAJ|olfactory receptor 51E2|olfactory receptor OR11-16|olfactory receptor, family 51, subfamily E, member 3 pseudogene|olfactory receptor, family 52, subfamily A, member 2|prostate specific G-protein coupled receptor|prostate-specific G-protein coupled receptor 20121230 -9606 81295 OR51A10P - OR51A11P|OR51A13 HGNC:15185 11 11p15.4 olfactory receptor, family 51, subfamily A, member 10 pseudogene pseudo OR51A10P olfactory receptor, family 51, subfamily A, member 10 pseudogene O - 20121230 -9606 81298 OR4R3P - - HGNC:15182 11 11p11.12 olfactory receptor, family 4, subfamily R, member 3 pseudogene pseudo OR4R3P olfactory receptor, family 4, subfamily R, member 3 pseudogene O - 20121230 -9606 81299 OR4R2P - - HGNC:15181 11 11p11.12 olfactory receptor, family 4, subfamily R, member 2 pseudogene pseudo OR4R2P olfactory receptor, family 4, subfamily R, member 2 pseudogene O - 20121230 -9606 81300 OR4P4 - OR4P3P HGNC:15180|Ensembl:ENSG00000181927|HPRD:14986|Vega:OTTHUMG00000165300 11 11q12.1 olfactory receptor, family 4, subfamily P, member 4 protein-coding OR4P4 olfactory receptor, family 4, subfamily P, member 4 O olfactory receptor 4P3|olfactory receptor 4P4|olfactory receptor, family 4, subfamily P, member 3 pseudogene 20121230 -9606 81304 OR4D7P - OST724 HGNC:15176 11 11q12.1 olfactory receptor, family 4, subfamily D, member 7 pseudogene pseudo OR4D7P olfactory receptor, family 4, subfamily D, member 7 pseudogene O - 20121230 -9606 81309 OR4C15 - OR11-127|OR11-134 HGNC:15171|Ensembl:ENSG00000181939|HPRD:14963|Vega:OTTHUMG00000166714 11 11q11 olfactory receptor, family 4, subfamily C, member 15 protein-coding OR4C15 olfactory receptor, family 4, subfamily C, member 15 O olfactory receptor 4C15|olfactory receptor OR11-127|olfactory receptor OR11-134 20121230 -9606 81310 OR4C14P - - HGNC:15170 11 11q11 olfactory receptor, family 4, subfamily C, member 14 pseudogene pseudo OR4C14P olfactory receptor, family 4, subfamily C, member 14 pseudogene O - 20121230 -9606 81315 OR4A8P - OR4A8 HGNC:15165 11 11p11.12 olfactory receptor, family 4, subfamily A, member 8 pseudogene pseudo OR4A8P olfactory receptor, family 4, subfamily A, member 8 pseudogene O - 20121230 -9606 81316 OR4A7P - - HGNC:15164 11 11p11.12 olfactory receptor, family 4, subfamily A, member 7 pseudogene pseudo OR4A7P olfactory receptor, family 4, subfamily A, member 7 pseudogene O - 20121230 -9606 81318 OR4A5 - OR11-111 HGNC:15162|Ensembl:ENSG00000221840|HPRD:17719|Vega:OTTHUMG00000166764 11 11p11.12 olfactory receptor, family 4, subfamily A, member 5 protein-coding OR4A5 olfactory receptor, family 4, subfamily A, member 5 O olfactory receptor 4A5|olfactory receptor OR11-111|seven transmembrane helix receptor 20121230 -9606 81320 OR4A3P - - HGNC:15160 11 11p11.12 olfactory receptor, family 4, subfamily A, member 3 pseudogene pseudo OR4A3P olfactory receptor, family 4, subfamily A, member 3 pseudogene O - 20121230 -9606 81322 OR4A21P - - HGNC:15158 11 11q11 olfactory receptor, family 4, subfamily A, member 21 pseudogene pseudo OR4A21P olfactory receptor, family 4, subfamily A, member 21 pseudogene O - 20121230 -9606 81324 OR4A19P - - HGNC:15156 11 11p11.12 olfactory receptor, family 4, subfamily A, member 19 pseudogene pseudo OR4A19P olfactory receptor, family 4, subfamily A, member 19 pseudogene O - 20121230 -9606 81325 OR4A18P - - HGNC:15155 11 11p11.12 olfactory receptor, family 4, subfamily A, member 18 pseudogene pseudo OR4A18P olfactory receptor, family 4, subfamily A, member 18 pseudogene O - 20121230 -9606 81327 OR4A16 - OR11-117|OR4A16Q HGNC:15153|Ensembl:ENSG00000181961|HPRD:14959|Vega:OTTHUMG00000166710 11 11q11 olfactory receptor, family 4, subfamily A, member 16 protein-coding OR4A16 olfactory receptor, family 4, subfamily A, member 16 O olfactory receptor 4A16|olfactory receptor OR11-117 20121230 -9606 81328 OR4A15 - OR11-118 HGNC:15152|Ensembl:ENSG00000181958|HPRD:14958|Vega:OTTHUMG00000166711 11 11q11 olfactory receptor, family 4, subfamily A, member 15 protein-coding OR4A15 olfactory receptor, family 4, subfamily A, member 15 O olfactory receptor 4A15|olfactory receptor OR11-118 20121230 -9606 81329 OR4A14P - - HGNC:15151 11 11q11 olfactory receptor, family 4, subfamily A, member 14 pseudogene pseudo OR4A14P olfactory receptor, family 4, subfamily A, member 14 pseudogene O - 20121230 -9606 81330 OR4A13P - - HGNC:15150 11 11q11 olfactory receptor, family 4, subfamily A, member 13 pseudogene pseudo OR4A13P olfactory receptor, family 4, subfamily A, member 13 pseudogene O - 20121230 -9606 81331 OR4A12P - - HGNC:15149 11 11q11 olfactory receptor, family 4, subfamily A, member 12 pseudogene pseudo OR4A12P olfactory receptor, family 4, subfamily A, member 12 pseudogene O - 20121230 -9606 81336 OR2AH1P - - HGNC:15144 11 11q12.1 olfactory receptor, family 2, subfamily AH, member 1 pseudogene pseudo OR2AH1P olfactory receptor, family 2, subfamily AH, member 1 pseudogene O - 20121230 -9606 81340 OR10Y1P - - HGNC:15140 11 11q12.1 olfactory receptor, family 10, subfamily Y, member 1 pseudogene pseudo OR10Y1P olfactory receptor, family 10, subfamily Y, member 1 pseudogene O - 20121230 -9606 81341 OR10W1 UNQ6469/PRO34070 OR10W1P|OR10W1Q|OR11-236|UNQ6469 HGNC:15139|Ensembl:ENSG00000172772|HPRD:18269|Vega:OTTHUMG00000167462 11 11q12.1 olfactory receptor, family 10, subfamily W, member 1 protein-coding OR10W1 olfactory receptor, family 10, subfamily W, member 1 O olfactory receptor 10W1|olfactory receptor OR11-236|olfactory receptor, family 10, subfamily W, member 1 pseudogene 20121230 -9606 81342 OR10V3P - - HGNC:15138 11 11q12.1 olfactory receptor, family 10, subfamily V, member 3 pseudogene pseudo OR10V3P olfactory receptor, family 10, subfamily V, member 3 pseudogene O - 20121230 -9606 81343 OR10V2P - - HGNC:15137 11 11q12.1 olfactory receptor, family 10, subfamily V, member 2 pseudogene pseudo OR10V2P olfactory receptor, family 10, subfamily V, member 2 pseudogene O - 20121230 -9606 81345 OR10Q2P - - HGNC:15135 11 11q12.1 olfactory receptor, family 10, subfamily Q, member 2 pseudogene pseudo OR10Q2P olfactory receptor, family 10, subfamily Q, member 2 pseudogene O - 20121230 -9606 81352 OR7M1P - - HGNC:15128 10 10q26.3 olfactory receptor, family 7, subfamily M, member 1 pseudogene pseudo OR7M1P olfactory receptor, family 7, subfamily M, member 1 pseudogene O - 20121230 -9606 81353 OR7E115P - OR10-2|OST704 HGNC:15127 10 10p13 olfactory receptor, family 7, subfamily E, member 115 pseudogene pseudo OR7E115P olfactory receptor, family 7, subfamily E, member 115 pseudogene O - 20121230 -9606 81354 OR7E110P - OR7E68P|OR7E71P|OR7E72P|OR7E73P|OR7E74P|OR7E75P|OR912-108|OR912-109|OR912-110|OR912-46|hg523|hg674 HGNC:15126 10 10p13 olfactory receptor, family 7, subfamily E, member 110 pseudogene pseudo OR7E110P olfactory receptor, family 7, subfamily E, member 110 pseudogene O - 20121230 -9606 81356 OR6L2P - - HGNC:15125 10 10q26.3 olfactory receptor, family 6, subfamily L, member 2 pseudogene pseudo OR6L2P olfactory receptor, family 6, subfamily L, member 2 pseudogene O - 20121230 -9606 81358 OR7E116P - OR7E112P|OST733 HGNC:15122 9 9q22.2 olfactory receptor, family 7, subfamily E, member 116 pseudogene pseudo OR7E116P olfactory receptor, family 7, subfamily E, member 116 pseudogene O - 20121230 -9606 81363 OR7E108P - OST726 HGNC:15117 9 9q22.2 olfactory receptor, family 7, subfamily E, member 108 pseudogene pseudo OR7E108P olfactory receptor, family 7, subfamily E, member 108 pseudogene O - 20121230 -9606 81366 OR2AM1P - OR37E HGNC:15113 9 9p13.3 olfactory receptor, family 2, subfamily AM, member 1 pseudogene pseudo OR2AM1P olfactory receptor, family 2, subfamily AM, member 1 pseudogene O - 20121230 -9606 81377 OR13C7P - OR13C7|OR37C|OST706 HGNC:15102 9 9p13.3 olfactory receptor, family 13, subfamily C, member 7 pseudogene pseudo OR13C7P olfactory receptor, family 13, subfamily C, member 7 pseudogene O - 20121230 -9606 81382 OR9P1P - OR9P2P HGNC:15097 7 7q35 olfactory receptor, family 9, subfamily P, member 1 pseudogene pseudo OR9P1P olfactory receptor, family 9, subfamily P, member 1 pseudogene O - 20121230 -9606 81383 OR9N1P - - HGNC:15096 7 7q34 olfactory receptor, family 9, subfamily N, member 1 pseudogene pseudo OR9N1P olfactory receptor, family 9, subfamily N, member 1 pseudogene O - 20121230 -9606 81390 OR4F7P - OR4F10 HGNC:15089 6 6q27 olfactory receptor, family 4, subfamily F, member 7 pseudogene pseudo OR4F7P olfactory receptor, family 4, subfamily F, member 7 pseudogene O - 20121230 -9606 81392 OR2AE1 - OR2AE2 HGNC:15087|Ensembl:ENSG00000244623|HPRD:14934|Vega:OTTHUMG00000156650 7 7q22.1 olfactory receptor, family 2, subfamily AE, member 1 protein-coding OR2AE1 olfactory receptor, family 2, subfamily AE, member 1 O olfactory receptor 2AE1|olfactory receptor 2AE2|olfactory receptor, family 2, subfamily AE, member 2 20121230 -9606 81399 OR4F16 - OR1-1|OR7-21 HGNC:15079|Ensembl:ENSG00000185097|HPRD:14969|Vega:OTTHUMG00000002581 1 1p36.33 olfactory receptor, family 4, subfamily F, member 16 protein-coding OR4F16 olfactory receptor, family 4, subfamily F, member 16 O olfactory receptor 4F3/4F16/4F29|olfactory receptor OR1-1|olfactory receptor OR4F16|olfactory receptor OR7-21 20121230 -9606 81406 OR2W6P - OR2W7P HGNC:15072 6 6p22.1 olfactory receptor, family 2, subfamily W, member 6 pseudogene pseudo OR2W6P olfactory receptor, family 2, subfamily W, member 6 pseudogene O - 20121230 -9606 81407 OR2W4P - - HGNC:15071 6 6p22.1 olfactory receptor, family 2, subfamily W, member 4 pseudogene pseudo OR2W4P olfactory receptor, family 2, subfamily W, member 4 pseudogene O - 20121230 -9606 81419 OR7E99P - - HGNC:15059 4 4p16.3 olfactory receptor, family 7, subfamily E, member 99 pseudogene pseudo OR7E99P olfactory receptor, family 7, subfamily E, member 99 pseudogene O - 20121230 -9606 81421 OR5M14P - OR5M15P HGNC:15057 4 4p13 olfactory receptor, family 5, subfamily M, member 14 pseudogene pseudo OR5M14P olfactory receptor, family 5, subfamily M, member 14 pseudogene O - 20121230 -9606 81428 OR7E122P - OST719 HGNC:15050 3 3p25.3 olfactory receptor, family 7, subfamily E, member 122 pseudogene pseudo OR7E122P olfactory receptor, family 7, subfamily E, member 122 pseudogene O - 20121230 -9606 81430 OR7E100P - OR7E135P HGNC:15048 3 3q13.2 olfactory receptor, family 7, subfamily E, member 100 pseudogene pseudo OR7E100P olfactory receptor, family 7, subfamily E, member 100 pseudogene O - 20121230 -9606 81431 OR5AC1 - OR5AC1P HGNC:15047 3 3q11.2 olfactory receptor, family 5, subfamily AC, member 1 (gene/pseudogene) pseudo OR5AC1 olfactory receptor, family 5, subfamily AC, member 1 (gene/pseudogene) O - 20121230 -9606 81438 OR4G6P - OR11-302 HGNC:15039 15 15q26 olfactory receptor, family 4, subfamily G, member 6 pseudogene pseudo OR4G6P olfactory receptor, family 4, subfamily G, member 6 pseudogene O - 20121230 -9606 81439 OR9H1P - UNQ9373 HGNC:15038 1 1q44 olfactory receptor, family 9, subfamily H, member 1 pseudogene pseudo OR9H1P olfactory receptor, family 9, subfamily H, member 1 pseudogene O - 20121230 -9606 81440 OR6R1P - - HGNC:15037 1 1q44 olfactory receptor, family 6, subfamily R, member 1 pseudogene pseudo OR6R1P olfactory receptor, family 6, subfamily R, member 1 pseudogene O - 20121230 -9606 81442 OR6N2 - OR1-23 HGNC:15035|Ensembl:ENSG00000188340|HPRD:15067|Vega:OTTHUMG00000022775 1 1q23.1 olfactory receptor, family 6, subfamily N, member 2 protein-coding OR6N2 olfactory receptor, family 6, subfamily N, member 2 O olfactory receptor 6N2|olfactory receptor OR1-23 20121230 -9606 81448 OR6K2 - OR1-17 HGNC:15029|Ensembl:ENSG00000196171|HPRD:15063|Vega:OTTHUMG00000022768 1 1q23.1 olfactory receptor, family 6, subfamily K, member 2 protein-coding OR6K2 olfactory receptor, family 6, subfamily K, member 2 O olfactory receptor 6K2|olfactory receptor OR1-17 20121230 -9606 81449 OR6K1P - - HGNC:15028 1 1q23.1 olfactory receptor, family 6, subfamily K, member 1 pseudogene pseudo OR6K1P olfactory receptor, family 6, subfamily K, member 1 pseudogene O - 20121230 -9606 81458 OR2T7 - OR2T7P|OST723 HGNC:15019 1 1q44 olfactory receptor, family 2, subfamily T, member 7 pseudo OR2T7 olfactory receptor, family 2, subfamily T, member 7 O - 20121230 -9606 81462 OR2L9P - - HGNC:15015 1 1q44 olfactory receptor, family 2, subfamily L, member 9 pseudogene pseudo OR2L9P olfactory receptor, family 2, subfamily L, member 9 pseudogene O - 20121230 -9606 81465 OR2L6P - - HGNC:15012 1 1q44 olfactory receptor, family 2, subfamily L, member 6 pseudogene pseudo OR2L6P olfactory receptor, family 2, subfamily L, member 6 pseudogene O - 20121230 -9606 81466 OR2L5 - OR2L11|OR2L5P HGNC:15011|Ensembl:ENSG00000197454|Vega:OTTHUMG00000040194 1 1q44 olfactory receptor, family 2, subfamily L, member 5 protein-coding OR2L5 olfactory receptor, family 2, subfamily L, member 5 O olfactory receptor 2L11|olfactory receptor 2L5|olfactory receptor OR1-53|olfactory receptor, family 2, subfamily L, member 11|olfactory receptor, family 2, subfamily L, member 5 pseudogene|seven transmembrane helix receptor 20121230 -9606 81469 OR2G3 RP11-978I15.5 OR1-33 HGNC:15008|Ensembl:ENSG00000177476|HPRD:14940|Vega:OTTHUMG00000040576 1 1q44 olfactory receptor, family 2, subfamily G, member 3 protein-coding OR2G3 olfactory receptor, family 2, subfamily G, member 3 O olfactory receptor 2G3|olfactory receptor OR1-33 20121230 -9606 81470 OR2G2 RP11-978I15.4 OR1-32 HGNC:15007|Ensembl:ENSG00000177489|HPRD:11412|Vega:OTTHUMG00000040575 1 1q44 olfactory receptor, family 2, subfamily G, member 2 protein-coding OR2G2 olfactory receptor, family 2, subfamily G, member 2 O olfactory receptor 2G2|olfactory receptor OR1-32|olfactory receptor, family 2, subfamily G, member 2 pseudogene 20121230 -9606 81472 OR2C3 - OR2C4|OR2C5P|OST742 HGNC:15005|Ensembl:ENSG00000196242|HPRD:17697|Vega:OTTHUMG00000040579 1 1q44 olfactory receptor, family 2, subfamily C, member 3 protein-coding OR2C3 olfactory receptor, family 2, subfamily C, member 3 O olfactory receptor 2C3|olfactory receptor 2C4|olfactory receptor 2C5|olfactory receptor OR1-30|olfactory receptor, family 2, subfamily C, member 4|olfactory receptor, family 2, subfamily C, member 5 pseudogene 20121230 -9606 81473 OR2AS1P - - HGNC:15004 1 1q44 olfactory receptor, family 2, subfamily AS, member 1 pseudogene pseudo OR2AS1P olfactory receptor, family 2, subfamily AS, member 1 pseudogene O - 20121230 -9606 81474 OR2AQ1P - - HGNC:15003 1 1q23.1 olfactory receptor, family 2, subfamily AQ, member 1 pseudogene pseudo OR2AQ1P olfactory receptor, family 2, subfamily AQ, member 1 pseudogene O - 20121230 -9606 81479 OR11I1P - OR11I2P HGNC:14997 1 1p13.2 olfactory receptor, family 11, subfamily I, member 1 pseudogene pseudo OR11I1P olfactory receptor, family 11, subfamily I, member 1 pseudogene O - 20121230 -9606 81486 OR10AE1P - OR10AE2P HGNC:14990 1 1q23.2 olfactory receptor, family 10, subfamily AE, member 1 pseudogene pseudo OR10AE1P olfactory receptor, family 10, subfamily AE, member 1 pseudogene O - 20121230 -9606 81487 OR10AA1P - - HGNC:14989 1 1q23.1 olfactory receptor, family 10, subfamily AA, member 1 pseudogene pseudo OR10AA1P olfactory receptor, family 10, subfamily AA, member 1 pseudogene O - 20121230 -9606 81488 POLR2M - GCOM1|GRINL1A|Gdown|Gdown1 HGNC:14862|MIM:606485|Ensembl:ENSG00000255529|HPRD:07575|Vega:OTTHUMG00000166486 15 15q21.3 polymerase (RNA) II (DNA directed) polypeptide M protein-coding POLR2M polymerase (RNA) II (DNA directed) polypeptide M O DNA-directed RNA polymerase II subunit M, isoforms 4/5|GRINL1A downstream protein Gdown4|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A|protein GRINL1A|protein GRINL1A, isoforms 4/5 20121230 -9606 81490 PTDSS2 - PSS2 HGNC:15463|MIM:612793|Ensembl:ENSG00000174915|HPRD:17927|Vega:OTTHUMG00000119087 11 11p15.5 phosphatidylserine synthase 2 protein-coding PTDSS2 phosphatidylserine synthase 2 O PSS-2|ptdSer synthase 2|serine-exchange enzyme II 20121230 -9606 81491 GPR63 - PSP24(beta)|PSP24B HGNC:13302|MIM:606915|Ensembl:ENSG00000112218|HPRD:06076 6 6q16.1-q16.3 G protein-coupled receptor 63 protein-coding GPR63 G protein-coupled receptor 63 O PSP24-2|PSP24-beta|brain expressed G-protein-coupled receptor PSP24 beta|probable G-protein coupled receptor 63 20121230 -9606 81492 RSPH6A - RSHL1|RSP4|RSP6|RSPH4B HGNC:14241|MIM:607548|Ensembl:ENSG00000104941|HPRD:09611 19 19q13.3 radial spoke head 6 homolog A (Chlamydomonas) protein-coding RSPH6A radial spoke head 6 homolog A (Chlamydomonas) O ortholog of mouse radial spokehead-like 1|radial spoke head protein 6 homolog A|radial spoke head-like protein 1|radial spokehead-like 1 20121230 -9606 81493 SYNC - SYNC1|SYNCOILIN HGNC:28897|MIM:611750|Ensembl:ENSG00000162520|HPRD:18134|Vega:OTTHUMG00000008087 1 1p35.1 syncoilin, intermediate filament protein protein-coding SYNC syncoilin, intermediate filament protein O intermediate filament protein syncoilin|syncoilin|syncoilin intermediate filament 1|syncoilin, intermediate filament 1|syncoilin-1 20121230 -9606 81494 CFHR5 RP11-32D17.3 CFHL5|FHR-5|FHR5 HGNC:24668|MIM:608593|Ensembl:ENSG00000134389|HPRD:06508|Vega:OTTHUMG00000036517 1 1q31.3 complement factor H-related 5 protein-coding CFHR5 complement factor H-related 5 O complement factor H-related protein 5|factor H-related protein 5 20121230 -9606 81501 DCSTAMP - FIND|TM7SF4|hDC-STAMP HGNC:18549|MIM:605933|Ensembl:ENSG00000164935|HPRD:07295|Vega:OTTHUMG00000164890 8 8q23 dendrocyte expressed seven transmembrane protein protein-coding DCSTAMP dendrocyte expressed seven transmembrane protein O DC-specific transmembrane protein|Dendritic cells (DC)-specific transmembrane protein|IL-4-induced protein|IL-Four (IL-4) induced|IL-Four INDuced|IL-four-induced protein|dendritic cell-specific transmembrane protein|dendrocyte-expressed seven transmembrane protein|transmembrane 7 superfamily member 4 20121230 -9606 81502 HM13 RP3-324O17.6 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1|dJ324O17.1 HGNC:16435|MIM:607106|Ensembl:ENSG00000101294|HPRD:06166|Vega:OTTHUMG00000032175 20 20q11.21 histocompatibility (minor) 13 protein-coding HM13 histocompatibility (minor) 13 O IMP-1|hIMP1|intramembrane protease 1|minor histocompatibility antigen 13|minor histocompatibility antigen H13|presenilin-like protein 3|signal peptide peptidase beta|signal peptide peptidase like 1 20121230 -9606 81532 MOB2 - HCCA2 HGNC:24904|MIM:611969|Ensembl:ENSG00000182208|HPRD:17581|Vega:OTTHUMG00000165545 11 11p15.5 MOB kinase activator 2 protein-coding MOB2 MOB kinase activator 2 O MOB2 Mps One Binder homolog|Mps one binder kinase activator-like 2|mob2 homolog 20121230 -9606 81533 ITFG1 CDA08 TIP HGNC:30697|MIM:611803|Ensembl:ENSG00000129636|HPRD:16692|Vega:OTTHUMG00000133103 16 16q12.1 integrin alpha FG-GAP repeat containing 1 protein-coding ITFG1 integrin alpha FG-GAP repeat containing 1 O 2310047C21Rik|T cell immunomodulatory protein|T-cell immunomodulatory protein|integrin-alpha FG-GAP repeat-containing protein 1 20121230 -9606 81537 SGPP1 - SPPase1 HGNC:17720|MIM:612826|Ensembl:ENSG00000126821|HPRD:10226|Vega:OTTHUMG00000029080 14 14q23.2 sphingosine-1-phosphate phosphatase 1 protein-coding SGPP1 sphingosine-1-phosphate phosphatase 1 O hSPP1|hSPPase1|sphingosine-1-phosphatase 1|spp1 20121230 -9606 81539 SLC38A1 - ATA1|NAT2|SAT1|SNAT1 HGNC:13447|MIM:608490|Ensembl:ENSG00000111371|HPRD:12245|Vega:OTTHUMG00000169470 12 12q13.11 solute carrier family 38, member 1 protein-coding SLC38A1 solute carrier family 38, member 1 O N-system amino acid transporter 2|amino acid transporter A1|amino acid transporter system A1|sodium-coupled neutral amino acid transporter 1|system A amino acid transporter 1|system N amino acid transporter 1 20121230 -9606 81542 TMX1 PSEC0085 PDIA11|TMX|TXNDC|TXNDC1 HGNC:15487|MIM:610527|Ensembl:ENSG00000139921|HPRD:15590|Vega:OTTHUMG00000171003 14 14q22.1 thioredoxin-related transmembrane protein 1 protein-coding TMX1 thioredoxin-related transmembrane protein 1 O protein disulfide isomerase family A, member 11|thioredoxin domain containing 1|thioredoxin domain-containing protein 1|transmembrane Trx-related protein 20121230 -9606 81543 LRRC3 UNQ9233/PRO31982 C21orf102 HGNC:14965|Ensembl:ENSG00000160233|HPRD:11286|Vega:OTTHUMG00000040847 21 21q22.3 leucine rich repeat containing 3 protein-coding LRRC3 leucine rich repeat containing 3 O leucine-rich repeat-containing protein 3 20121230 -9606 81544 GDPD5 PP6037 GDE2|PP1665 HGNC:28804|MIM:609632|Ensembl:ENSG00000158555|HPRD:15159|Vega:OTTHUMG00000165484 11 11q13.4-q13.5 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 O glycerophosphodiester phosphodiesterase 2|glycerophosphodiester phosphodiesterase domain-containing protein 5 20121230 -9606 81545 FBXO38 SP329 Fbx38|MOKA HGNC:28844|MIM:608533|Ensembl:ENSG00000145868|HPRD:09775|Vega:OTTHUMG00000129929 5 5q32 F-box protein 38 protein-coding FBXO38 F-box protein 38 O F-box only protein 38|modulator of KLF7 activity homolog 20121230 -9606 81550 TDRD3 RP11-459E2.1 - HGNC:20612|MIM:614392|Ensembl:ENSG00000083544|HPRD:11625|Vega:OTTHUMG00000017007 13 13q21.2 tudor domain containing 3 protein-coding TDRD3 tudor domain containing 3 O tudor domain-containing protein 3 20121230 -9606 81551 STMN4 - RB3 HGNC:16078|Ensembl:ENSG00000015592|HPRD:18120|Vega:OTTHUMG00000099461 8 8p21.2 stathmin-like 4 protein-coding STMN4 stathmin-like 4 O stathmin-4|stathmin-like protein B3|stathmin-like-protein RB3 20121230 -9606 81552 VOPP1 tcag7.1069 ECOP|GASP HGNC:34518|MIM:611915|Ensembl:ENSG00000154978|HPRD:08526|Vega:OTTHUMG00000156124 7 7p11.2 vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 O EGFR-coamplified and overexpressed protein|Glioblastoma-amplified secreted protein|hypothetical protein DKFZp564K0822|putative NF-kappa-B-activating protein 055N 20121230 -9606 81553 FAM49A - - HGNC:25373|Ensembl:ENSG00000197872|HPRD:07729|Vega:OTTHUMG00000090615 2 2p24.2 family with sequence similarity 49, member A protein-coding FAM49A family with sequence similarity 49, member A O protein FAM49A 20121230 -9606 81554 WBSCR16 - - HGNC:14948|Ensembl:ENSG00000174374|HPRD:15654|Vega:OTTHUMG00000130373 7 7q11.23 Williams-Beuren syndrome chromosome region 16 protein-coding WBSCR16 Williams-Beuren syndrome chromosome region 16 O RCC1-like G exchanging factor-like protein|Williams-Beuren syndrome chromosomal region 16 protein 20121230 -9606 81555 YIPF5 PP12723 FinGER5|SB140|SMAP-5|SMAP5|YIP1A HGNC:24877|MIM:611483|Ensembl:ENSG00000145817|HPRD:18071|Vega:OTTHUMG00000129679 5 5q31.3 Yip1 domain family, member 5 protein-coding YIPF5 Yip1 domain family, member 5 O YIP1 family member 5|YPT-interacting protein 1 A|five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5|golgi membrane protein SB140|protein YIPF5|smooth muscle cell associated protein 5|smooth muscle cell-associated protein 5 20121230 -9606 81556 VWA9 - C15orf44 HGNC:25372|Ensembl:ENSG00000138614|HPRD:13175|Vega:OTTHUMG00000133159 15 15q22.31 von Willebrand factor A domain containing 9 protein-coding VWA9 von Willebrand factor A domain containing 9 O UPF0464 protein C15orf44 20121230 -9606 81557 MAGED4B RP11-363G10.1 - HGNC:22880|MIM:300765|Ensembl:ENSG00000187243|HPRD:06631|Vega:OTTHUMG00000021546 X Xp11 melanoma antigen family D, 4B protein-coding MAGED4B melanoma antigen family D, 4B O MAGE-D4 antigen|MAGE-E1 antigen|melanoma-associated antigen D4 20121230 -9606 81558 FAM117A - - HGNC:24179|Ensembl:ENSG00000121104|HPRD:17432|Vega:OTTHUMG00000161696 17 17q21.33 family with sequence similarity 117, member A protein-coding FAM117A family with sequence similarity 117, member A O C/EBP induced protein|C/EBP-induced protein|protein FAM117A 20121230 -9606 81559 TRIM11 - BIA1|RNF92 HGNC:16281|MIM:607868|Ensembl:ENSG00000154370|HPRD:07429|Vega:OTTHUMG00000039773 1 1q42.13 tripartite motif containing 11 protein-coding TRIM11 tripartite motif containing 11 O E3 ubiquitin-protein ligase TRIM11|RING finger protein 92|tripartite motif-containing 11|tripartite motif-containing protein 11 20121230 -9606 81562 LMAN2L PSEC0028 VIPL HGNC:19263|MIM:609552|Ensembl:ENSG00000114988|HPRD:17286|Vega:OTTHUMG00000130453 2 2q11.2 lectin, mannose-binding 2-like protein-coding LMAN2L lectin, mannose-binding 2-like O LMAN2-like protein|VIP36-like protein 20121230 -9606 81563 C1orf21 RP4-768P8.1 PIG13 HGNC:15494|Ensembl:ENSG00000116667|HPRD:12721|Vega:OTTHUMG00000035386 1 1q25 chromosome 1 open reading frame 21 protein-coding C1orf21 chromosome 1 open reading frame 21 O cell proliferation-inducing gene 13 protein|proliferation-inducing protein 13|uncharacterized protein C1orf21 20121230 -9606 81565 NDEL1 - EOPA|MITAP1|NUDEL HGNC:17620|MIM:607538|Ensembl:ENSG00000166579|HPRD:06340|Vega:OTTHUMG00000108193 17 17p13.1 nudE nuclear distribution E homolog (A. nidulans)-like 1 protein-coding NDEL1 nudE nuclear distribution E homolog (A. nidulans)-like 1 O endooligopeptidase A|mitosin-associated protein 1|mitosin-associated protein MITAP1|nuclear distribution protein nudE-like 1|nudE nuclear distribution gene E homolog-like 1|protein Nudel 20121230 -9606 81566 CSRNP2 - C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 HGNC:16006|Ensembl:ENSG00000110925|HPRD:12608|Vega:OTTHUMG00000169578 12 12q13.11-q13.12 cysteine-serine-rich nuclear protein 2 protein-coding CSRNP2 cysteine-serine-rich nuclear protein 2 O CSRNP-2|TGF-beta-induced apoptosis protein 12|cysteine/serine-rich nuclear protein 2|family with sequence similarity 130, member A1|protein phosphatase 1, regulatory subunit 72 20121230 -9606 81567 TXNDC5 RP1-126E20.1 ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364 HGNC:21073|Ensembl:ENSG00000239264|HPRD:18249|Vega:OTTHUMG00000014216 6 6p24.3 thioredoxin domain containing 5 (endoplasmic reticulum) protein-coding TXNDC5 thioredoxin domain containing 5 (endoplasmic reticulum) O ER protein 46|endoplasmic reticulum protein ERp46|endoplasmic reticulum resident protein 46|endothelial protein disulphide isomerase|protein disulfide isomerase family A, member 15|thioredoxin domain-containing protein 5|thioredoxin related protein|thioredoxin-like protein p46 20121230 -9606 81569 ACTL8 - CT57 HGNC:24018|Ensembl:ENSG00000117148|HPRD:11274|Vega:OTTHUMG00000002512 1 1p36.2-p35 actin-like 8 protein-coding ACTL8 actin-like 8 O actin like protein|actin-like protein 8|cancer/testis antigen 57 20121230 -9606 81570 CLPB - HSP78|SKD3 HGNC:30664|Ensembl:ENSG00000162129|HPRD:11560|Vega:OTTHUMG00000167902 11 11q13.4 ClpB caseinolytic peptidase B homolog (E. coli) protein-coding CLPB ClpB caseinolytic peptidase B homolog (E. coli) O caseinolytic peptidase B protein homolog|suppressor of potassium transport defect 3 20121230 -9606 81571 MIR600HG GL012 C9orf45|NCRNA00287 HGNC:23642|HPRD:12960 9 9q33.3 MIR600 host gene (non-protein coding) miscRNA MIR600HG MIR600 host gene (non-protein coding) O - 20121230 -9606 81572 PDRG1 RP1-310O13.8 C20orf126|PDRG HGNC:16119|MIM:610789|Ensembl:ENSG00000088356|HPRD:17833|Vega:OTTHUMG00000032196 20 20q11.21 p53 and DNA-damage regulated 1 protein-coding PDRG1 p53 and DNA-damage regulated 1 O p53 and DNA damage regulated 1|p53 and DNA damage-regulated protein 1 20121230 -9606 81573 ANKRD13C - RP4-677H15.5|dJ677H15.3 HGNC:25374|Ensembl:ENSG00000118454|HPRD:13176|Vega:OTTHUMG00000009343 1 1p32.3-p31.3 ankyrin repeat domain 13C protein-coding ANKRD13C ankyrin repeat domain 13C O ankyrin repeat domain-containing protein 13C 20121230 -9606 81575 APOLD1 - VERGE HGNC:25268|MIM:612456|Ensembl:ENSG00000178878|HPRD:13153|Vega:OTTHUMG00000153561 12 12p13.1 apolipoprotein L domain containing 1 protein-coding APOLD1 apolipoprotein L domain containing 1 O apolipoprotein L domain-containing protein 1|vascular early response gene protein 20121230 -9606 81576 CCDC130 SB115 - HGNC:28118|Ensembl:ENSG00000104957|HPRD:11304|Vega:OTTHUMG00000180837 19 19p13.2 coiled-coil domain containing 130 protein-coding CCDC130 coiled-coil domain containing 130 O 9 kDa protein|coiled-coil domain-containing protein 130 20121230 -9606 81577 GFOD2 UNQ9430/PRO34691 - HGNC:28159|Ensembl:ENSG00000141098|HPRD:14419|Vega:OTTHUMG00000137537 16 16q22.1 glucose-fructose oxidoreductase domain containing 2 protein-coding GFOD2 glucose-fructose oxidoreductase domain containing 2 O glucose-fructose oxidoreductase domain-containing protein 2 20121230 -9606 81578 COL21A1 FP633 COLA1L|dJ682J15.1|dJ708F5.1 HGNC:17025|MIM:610002|Ensembl:ENSG00000124749|HPRD:09884|Vega:OTTHUMG00000014907 6 6p12.3-p11.2|6p12.3-p11.2 collagen, type XXI, alpha 1 protein-coding COL21A1 collagen, type XXI, alpha 1 O alpha 1 chain-like collagen|alpha 1 type XXI collagen|collagen alpha-1(XXI) chain 20121230 -9606 81579 PLA2G12A FKSG38 GXII|PLA2G12|ROSSY HGNC:18554|MIM:611652|Ensembl:ENSG00000123739|HPRD:17858|Vega:OTTHUMG00000131915 4 4q25 phospholipase A2, group XIIA protein-coding PLA2G12A phospholipase A2, group XIIA O GXII sPLA2|group XII secreted phospholipase A2|group XIIA secreted phospholipase A2|group XIIA secretory phospholipase A2|phosphatidylcholine 2-acylhydrolase 12A|sPLA2-XII 20121230 -9606 81602 CDADC1 RP11-103J18.2 NYD-SP15|bA103J18.1 HGNC:20299|Ensembl:ENSG00000102543|HPRD:16693|Vega:OTTHUMG00000016913 13 13q14.2 cytidine and dCMP deaminase domain containing 1 protein-coding CDADC1 cytidine and dCMP deaminase domain containing 1 O cytidine and dCMP deaminase domain-containing protein 1|protein kinase NYD-SP15|testis development protein NYD-SP15 20121230 -9606 81603 TRIM8 RP11-47A8.4 GERP|RNF27 HGNC:15579|MIM:606125|Ensembl:ENSG00000171206|HPRD:06934|Vega:OTTHUMG00000018964 10 10q24.3 tripartite motif containing 8 protein-coding TRIM8 tripartite motif containing 8 O glioblastoma expressed ring finger protein|glioblastoma-expressed RING finger protein|probable E3 ubiquitin-protein ligase TRIM8|ring finger protein 27|tripartite motif protein TRIM8|tripartite motif-containing 8|tripartite motif-containing protein 8 20121230 -9606 81605 URM1 RP11-339B21.4 C9orf74 HGNC:28378|MIM:612693|Ensembl:ENSG00000167118|HPRD:12976|Vega:OTTHUMG00000020742 9 9q34.11 ubiquitin related modifier 1 protein-coding URM1 ubiquitin related modifier 1 O ubiquitin related modifier 1 homolog|ubiquitin-related modifier 1 homolog 20121230 -9606 81606 LBH - - HGNC:29532|MIM:611763|Ensembl:ENSG00000213626|HPRD:13965|Vega:OTTHUMG00000152051 2 2p23.1 limb bud and heart development protein-coding LBH limb bud and heart development O hLBH|limb bud and heart development homolog|protein LBH 20121230 -9606 81607 PVRL4 - EDSS1|LNIR|PRR4|nectin-4 HGNC:19688|MIM:609607|Ensembl:ENSG00000143217|HPRD:17934|Vega:OTTHUMG00000031475 1 1q22-q23.2 poliovirus receptor-related 4 protein-coding PVRL4 poliovirus receptor-related 4 O Ig superfamily receptor LNIR|nectin 4|poliovirus receptor-related protein 4 20121230 -9606 81608 FIP1L1 - Rhe|hFip1 HGNC:19124|MIM:607686|Ensembl:ENSG00000145216|HPRD:09646|Vega:OTTHUMG00000128701 4 4q12 FIP1 like 1 (S. cerevisiae) protein-coding FIP1L1 FIP1 like 1 (S. cerevisiae) O FIP1-like 1 protein|factor interacting with PAP|pre-mRNA 3'-end-processing factor FIP1|rearranged in hypereosinophilia 20121230 -9606 81609 SNX27 RP11-98D18.12-005 MRT1|MY014 HGNC:20073|MIM:611541|Ensembl:ENSG00000143376|HPRD:11591|Vega:OTTHUMG00000013052 1 1q21.3 sorting nexin family member 27 protein-coding SNX27 sorting nexin family member 27 O methamphetamine-responsive transcript 1|sorting nexin-27 20121230 -9606 81610 FAM83D - C20orf129|CHICA|dJ616B8.3 HGNC:16122|Ensembl:ENSG00000101447|HPRD:12744|Vega:OTTHUMG00000032462 20 20q11.22-q12 family with sequence similarity 83, member D protein-coding FAM83D family with sequence similarity 83, member D O protein FAM83D|spindle protein CHICA 20121230 -9606 81611 ANP32E RP4-790G17.1 LANP-L|LANPL HGNC:16673|MIM:609611|Ensembl:ENSG00000143401|HPRD:16493|Vega:OTTHUMG00000012547 1 1q21.2 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E protein-coding ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E O LANP-like protein|acidic leucine-rich nuclear phosphoprotein 32 family member E|leucine-rich acidic nuclear protein like 20121230 -9606 81614 NIPA2 - - HGNC:17044|MIM:608146|Ensembl:ENSG00000140157|HPRD:16290|Vega:OTTHUMG00000129101 15 15q11.2 non imprinted in Prader-Willi/Angelman syndrome 2 protein-coding NIPA2 non imprinted in Prader-Willi/Angelman syndrome 2 O magnesium transporter NIPA2|non-imprinted in Prader-Willi/Angelman syndrome region protein 2 20121230 -9606 81615 TMEM163 - DC29|SV31 HGNC:25380|Ensembl:ENSG00000152128|HPRD:13178|Vega:OTTHUMG00000131713 2 2q21.3 transmembrane protein 163 protein-coding TMEM163 transmembrane protein 163 O - 20121230 -9606 81616 ACSBG2 UNQ2443/PRO5005 BGR|BRGL|PRTD-NY3|PRTDNY3 HGNC:24174|MIM:614363|Ensembl:ENSG00000130377|HPRD:09824|Vega:OTTHUMG00000180754 19 19p13.3 acyl-CoA synthetase bubblegum family member 2 protein-coding ACSBG2 acyl-CoA synthetase bubblegum family member 2 O bubblegum-related protein|long-chain-fatty-acid--CoA ligase ACSBG2 20121230 -9606 81617 CAB39L RP11-103J18.3 MO25-BETA|MO2L|bA103J18.3 HGNC:20290|MIM:612175|Ensembl:ENSG00000102547|HPRD:12993|Vega:OTTHUMG00000016914 13 13q14.2 calcium binding protein 39-like protein-coding CAB39L calcium binding protein 39-like O MO25beta|U937-associated antigen|antigen MLAA-34|calcium-binding protein 39-like|mo25-like protein|sarcoma antigen NY-SAR-79 20121230 -9606 81618 ITM2C hucep-14 BRI3|BRICD2C|E25|E25C|ITM3 HGNC:6175|MIM:609554|Ensembl:ENSG00000135916|HPRD:17167|Vega:OTTHUMG00000133219 2 2q37 integral membrane protein 2C protein-coding ITM2C integral membrane protein 2C O BRICHOS domain containing 2C|cerebral protein 14|hRPC.1050_D_4|integral membrane protein 3|transmembrane protein BRI3 20121230 -9606 81619 TSPAN14 - DC-TM4F2|TM4SF14 HGNC:23303|Ensembl:ENSG00000108219|HPRD:18196|Vega:OTTHUMG00000018615 10 10q23.1 tetraspanin 14 protein-coding TSPAN14 tetraspanin 14 O tetraspanin similar to TM4SF9|tetraspanin-14|transmembrane 4 superfamily member 14|tspan-14 20121230 -9606 81620 CDT1 - DUP|RIS2 HGNC:24576|MIM:605525|Ensembl:ENSG00000167513|HPRD:06900|Vega:OTTHUMG00000173467 16 16q24.3 chromatin licensing and DNA replication factor 1 protein-coding CDT1 chromatin licensing and DNA replication factor 1 O DNA replication factor Cdt1|Double parked, Drosophila, homolog of 20121230 -9606 81621 KAZALD1 RP11-108L7.10-001 BONO1|FKSG28|FKSG40|IGFBP-rP10 HGNC:25460|MIM:609208|Ensembl:ENSG00000107821|HPRD:13755|Vega:OTTHUMG00000018918 10 10q24.31 Kazal-type serine peptidase inhibitor domain 1 protein-coding KAZALD1 Kazal-type serine peptidase inhibitor domain 1 O IGFBP-related protein 10|Kazal-type serine protease inhibitor domain 1|bone- and odontoblast-expressed gene 1|kazal-type serine protease inhibitor domain-containing protein 1|novel kazal-type serine protease inhibitor domain and immunoglobulin domain containing protein 20121230 -9606 81622 UNC93B1 - IIAE1|UNC93|UNC93B|Unc-93B1 HGNC:13481|MIM:608204|Ensembl:ENSG00000110057|HPRD:12191 11 11q13 unc-93 homolog B1 (C. elegans) protein-coding UNC93B1 unc-93 homolog B1 (C. elegans) O hUNC93B1|protein unc-93 homolog B1|unc-93 related protein|unc93 homolog B|unc93 homolog B1 20121230 -9606 81623 DEFB126 - C20orf8|DEFB-26|DEFB26|ESP13.2|bA530N10.1|hBD-26 HGNC:15900|HPRD:10876 20 20p13 defensin, beta 126 protein-coding DEFB126 defensin, beta 126 O beta defensin 26|beta-defensin 126|beta-defensin 26|epididymal secretory protein 13.2|epididymal secretory protein ESP13.2 20121230 -9606 81624 DIAPH3 RP11-26P21.1 AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2 HGNC:15480|MIM:614567|Ensembl:ENSG00000139734|HPRD:10884|Vega:OTTHUMG00000017004 13 13q21.2 diaphanous homolog 3 (Drosophila) protein-coding DIAPH3 diaphanous homolog 3 (Drosophila) O diaphanous-related formin-3|protein diaphanous homolog 3 20121230 -9606 81626 SHCBP1L RP5-1133A12.2 C1orf14|GE36 HGNC:16788|Ensembl:ENSG00000157060|HPRD:16634|Vega:OTTHUMG00000035419 1 1q25.3 SHC SH2-domain binding protein 1-like protein-coding SHCBP1L SHC SH2-domain binding protein 1-like O GE36|SHC SH2 domain-binding protein 1-like protein 20121230 -9606 81627 TRMT1L MSTP070 C1orf25|MST070|TRM1L|bG120K12.3 HGNC:16782|MIM:611673|Ensembl:ENSG00000121486|HPRD:12722|Vega:OTTHUMG00000035389 1 1q25.2 tRNA methyltransferase 1 homolog (S. cerevisiae)-like protein-coding TRMT1L tRNA methyltransferase 1 homolog (S. cerevisiae)-like O TRM1 tRNA methyltransferase 1-like|TRM1-like protein|TRMT1-like protein 20121230 -9606 81628 TSC22D4 - THG-1|THG1|TILZ2 HGNC:21696|MIM:611914|Ensembl:ENSG00000166925|HPRD:18231|Vega:OTTHUMG00000150233 7 7p21-p15 TSC22 domain family, member 4 protein-coding TSC22D4 TSC22 domain family, member 4 O TSC22 domain family 4|TSC22 domain family protein 4|TSC22-related-inducible leucine zipper protein 2|tsc-22-like protein THG-1 20121230 -9606 81629 TSSK3 - SPOGA3|STK22C|STK22D|TSK3 HGNC:15473|MIM:607660|Ensembl:ENSG00000162526|HPRD:09635|Vega:OTTHUMG00000007585 1 1p35-p34 testis-specific serine kinase 3 protein-coding TSSK3 testis-specific serine kinase 3 O TSK-3|TSSK-3|serine/threonine-protein kinase 22C|spermiogenesis associated 3|testis-specific kinase 3|testis-specific serine/threonine kinase 22C|testis-specific serine/threonine-protein kinase 3 20121230 -9606 81631 MAP1LC3B - ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a HGNC:13352|MIM:609604|Ensembl:ENSG00000140941|HPRD:14358|Vega:OTTHUMG00000137654 16 16q24.2 microtubule-associated protein 1 light chain 3 beta protein-coding MAP1LC3B microtubule-associated protein 1 light chain 3 beta O MAP1 light chain 3-like protein 2|MAP1A/MAP1B LC3 B|MAP1A/MAP1B light chain 3 B|autophagy-related ubiquitin-like modifier LC3 B|microtubule-associated proteins 1A/1B light chain 3B 20121230 -9606 81669 CCNL2 RP4-758J18.1 ANIA-6B|CCNM|HCLA-ISO|HLA-ISO|PCEE|SB138 HGNC:20570|MIM:613482|Ensembl:ENSG00000221978|HPRD:10815|Vega:OTTHUMG00000002917 1 1p36.33 cyclin L2 protein-coding CCNL2 cyclin L2 O cyclin M|cyclin-L2|paneth cell-enhanced expression protein 20121230 -9606 81671 VMP1 HSPC292 EPG3|TANGO5|TMEM49 HGNC:29559|MIM:611753|Ensembl:ENSG00000062716|HPRD:15649|Vega:OTTHUMG00000179882 17 17q23.1 vacuole membrane protein 1 protein-coding VMP1 vacuole membrane protein 1 O ectopic P-granules autophagy protein 3 homolog|transmembrane protein 49|transport and golgi organization 5 homolog 20121230 -9606 81688 C6orf62 RP1-30M3.4 Nbla00237|XTP12|dJ30M3.2 HGNC:20998|Ensembl:ENSG00000112308|HPRD:12891|Vega:OTTHUMG00000014361 6 6p22.3 chromosome 6 open reading frame 62 protein-coding C6orf62 chromosome 6 open reading frame 62 O HBV X-transactivated gene 12 protein|HBV X-transactivated protein 12|HBV XAg-transactivated protein 12|uncharacterized protein C6orf62 20121230 -9606 81689 ISCA1 GK004 HBLD2|ISA1|RP11-507D14.2|hIscA HGNC:28660|MIM:611006|Ensembl:ENSG00000135070|HPRD:17091|Vega:OTTHUMG00000020135 9 9q21.33 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) protein-coding ISCA1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) O HESB like domain containing 2|HESB-like domain-containing protein 2|iron sulfur assembly protein IscA|iron-sulfur assembly protein IscA|iron-sulfur cluster assembly 1 homolog, mitochondrial 20121230 -9606 81691 LOC81691 44M2.3 - Ensembl:ENSG00000005189|HPRD:17433|Vega:OTTHUMG00000131556 16 16p12.3 exonuclease NEF-sp protein-coding - - - putative RNA exonuclease NEF-sp 20121230 -9606 81693 AMN UNQ513/PRO1028 PRO1028|amnionless HGNC:14604|MIM:605799|Ensembl:ENSG00000166126|HPRD:09314|Vega:OTTHUMG00000171897 14 14q32.3 amnion associated transmembrane protein protein-coding AMN amnion associated transmembrane protein O amnionless homolog|protein amnionless|visceral endoderm-specific type 1 transmembrane protein 20121230 -9606 81694 OR2W2P - hs6M1-30P HGNC:13970 6 6p22.1 olfactory receptor, family 2, subfamily W, member 2 pseudogene pseudo OR2W2P olfactory receptor, family 2, subfamily W, member 2 pseudogene O - 20121230 -9606 81695 OR2B7P - hs6M1-31P HGNC:13967 6 6p22.1 olfactory receptor, family 2, subfamily B, member 7 pseudogene pseudo OR2B7P olfactory receptor, family 2, subfamily B, member 7 pseudogene O - 20121230 -9606 81696 OR5V1 DAMA-334F21.4 6M1-21|hs6M1-21 HGNC:13972|Ensembl:ENSG00000243729|HPRD:17771|Vega:OTTHUMG00000031199 6 6p22.1 olfactory receptor, family 5, subfamily V, member 1 protein-coding OR5V1 olfactory receptor, family 5, subfamily V, member 1 O olfactory receptor 5V1|olfactory receptor OR6-26 20121230 -9606 81697 OR2B2 - OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10 HGNC:13966|Ensembl:ENSG00000168131|HPRD:17695|Vega:OTTHUMG00000014495 6 6p22.3-p21.3 olfactory receptor, family 2, subfamily B, member 2 protein-coding OR2B2 olfactory receptor, family 2, subfamily B, member 2 O olfactory receptor 2B2|olfactory receptor 2B9|olfactory receptor 6-1|olfactory receptor OR6-2|olfactory receptor, family 2, subfamily B, member 9 20121230 -9606 81698 LINC00597 - C15orf5 HGNC:1193|HPRD:12672 15 15q23-q24 long intergenic non-protein coding RNA 597 miscRNA LINC00597 long intergenic non-protein coding RNA 597 O - 20121230 -9606 81704 DOCK8 RP11-165F24.7 MRD2|ZIR8 HGNC:19191|MIM:611432|Ensembl:ENSG00000107099|HPRD:10920|Vega:OTTHUMG00000078789 9 9p24.3 dedicator of cytokinesis 8 protein-coding DOCK8 dedicator of cytokinesis 8 O 1200017A24Rik|dedicator of cytokinesis protein 8 20121230 -9606 81706 PPP1R14C - CPI17-like|KEPI|NY-BR-81 HGNC:14952|MIM:613242|Ensembl:ENSG00000198729|HPRD:17890|Vega:OTTHUMG00000015818 6 6q24.3-q25.3 protein phosphatase 1, regulatory (inhibitor) subunit 14C protein-coding PPP1R14C protein phosphatase 1, regulatory (inhibitor) subunit 14C O PKC-potentiated PP1 inhibitory protein|kinase C-enhanced PP1 inhibitor|kinase-enhanced PP1 inhibitor|protein phosphatase 1 regulatory subunit 14C|serologically defined breast cancer antigen NY-BR-81 20121230 -9606 81786 TRIM7 - GNIP|RNF90 HGNC:16278|MIM:609315|Ensembl:ENSG00000146054|HPRD:11648|Vega:OTTHUMG00000130963 5 5q35.3 tripartite motif containing 7 protein-coding TRIM7 tripartite motif containing 7 O RING finger protein 90|glycogenin-interacting protein|tripartite motif protein TRIM7|tripartite motif-containing 7|tripartite motif-containing protein 7 20121230 -9606 81787 DKFZP547L112 - - - 15 15q11.2 uncharacterized protein DKFZp547L112 unknown - - - - 20121230 -9606 81788 NUAK2 - SNARK HGNC:29558|MIM:608131|Ensembl:ENSG00000163545|HPRD:12172|Vega:OTTHUMG00000037196 1 1q32.1 NUAK family, SNF1-like kinase, 2 protein-coding NUAK2 NUAK family, SNF1-like kinase, 2 O NUAK family SNF1-like kinase 2|SNF1/AMP activated protein kinase|SNF1/AMP kinase-related kinase|omphalocele kinase 2 20121230 -9606 81789 TIGD6 - - HGNC:18332|Ensembl:ENSG00000164296|HPRD:18190|Vega:OTTHUMG00000130045 5 5q32 tigger transposable element derived 6 protein-coding TIGD6 tigger transposable element derived 6 O tigger transposable element-derived protein 6 20121230 -9606 81790 RNF170 - SNAX1 HGNC:25358|MIM:614649|Ensembl:ENSG00000120925|HPRD:13165|Vega:OTTHUMG00000165277 8 8p11.21 ring finger protein 170 protein-coding RNF170 ring finger protein 170 O E3 ubiquitin-protein ligase RNF170|putative LAG1-interacting protein 20121230 -9606 81792 ADAMTS12 UNQ1918 PRO4389 HGNC:14605|MIM:606184|Ensembl:ENSG00000151388|HPRD:05862|Vega:OTTHUMG00000162088 5 5q35 ADAM metallopeptidase with thrombospondin type 1 motif, 12 protein-coding ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 O A disintegrin and metalloproteinase with thrombospondin motifs 12|ADAM-TS 12|ADAM-TS12|ADAMTS-12|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 12 20121230 -9606 81793 TLR10 UNQ315/PRO358 CD290 HGNC:15634|MIM:606270|Ensembl:ENSG00000174123|HPRD:05884|Vega:OTTHUMG00000128578 4 4p14 toll-like receptor 10 protein-coding TLR10 toll-like receptor 10 O - 20121230 -9606 81794 ADAMTS10 - ADAM-TS10|WMS|WMS1 HGNC:13201|MIM:608990|Ensembl:ENSG00000142303|HPRD:07470 19 19p13.2 ADAM metallopeptidase with thrombospondin type 1 motif, 10 protein-coding ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10 O A disintegrin and metalloproteinase with thrombospondin motifs 10|ADAM-TS 10|ADAMTS-10|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10|zinc metalloendopeptidase 20121230 -9606 81796 SLCO5A1 - OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15 HGNC:19046|MIM:613543|Ensembl:ENSG00000137571|HPRD:15399|Vega:OTTHUMG00000165121 8 8q13.3 solute carrier organic anion transporter family, member 5A1 protein-coding SLCO5A1 solute carrier organic anion transporter family, member 5A1 O organic anion transporter polypeptide-related protein 4|solute carrier family 21 (organic anion transporter), member 15|solute carrier family 21 member 15|solute carrier organic anion transporter family member 5A1 20121230 -9606 81797 OR12D3 DADB-136A24.10-001 hs6M1-27 HGNC:13963|Ensembl:ENSG00000112462|HPRD:17679|Vega:OTTHUMG00000031051 6 6p22.1 olfactory receptor, family 12, subfamily D, member 3 protein-coding OR12D3 olfactory receptor, family 12, subfamily D, member 3 O olfactory receptor 12D3|olfactory receptor OR6-27 20121230 -9606 81831 NETO2 UNQ1926/PRO4401 BTCL2|NEOT2 HGNC:14644|MIM:607974|Ensembl:ENSG00000171208|HPRD:09721|Vega:OTTHUMG00000133101 16 16q11 neuropilin (NRP) and tolloid (TLL)-like 2 protein-coding NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 O brain-specific transmembrane protein containing 2 CUB and 1 LDL-receptor class A domains protein 2|neuropilin and tolloid-like protein 2 20121230 -9606 81832 NETO1 - BCTL1|BTCL1 HGNC:13823|MIM:607973|Ensembl:ENSG00000166342|HPRD:16264|Vega:OTTHUMG00000132834 18 18q22.2 neuropilin (NRP) and tolloid (TLL)-like 1 protein-coding NETO1 neuropilin (NRP) and tolloid (TLL)-like 1 O brain-specific transmembrane protein containing 2 CUB and 1 LDL-receptor class A domains protein 1|neuropilin and tolloid-like protein 1 20121230 -9606 81833 SPACA1 RP1-23D17.2 SAMP32 HGNC:14967|MIM:612739|Ensembl:ENSG00000118434|HPRD:15419|Vega:OTTHUMG00000015183 6 6q15 sperm acrosome associated 1 protein-coding SPACA1 sperm acrosome associated 1 O sperm acrosomal membrane-associated protein 32|sperm acrosome membrane-associated protein 1 20121230 -9606 81839 VANGL1 - KITENIN|LPP2|STB2|STBM2 HGNC:15512|MIM:610132|Ensembl:ENSG00000173218|HPRD:18279|Vega:OTTHUMG00000011971 1 1p13.1 vang-like 1 (van gogh, Drosophila) protein-coding VANGL1 vang-like 1 (van gogh, Drosophila) O KAI1 C-terminal interacting tetraspanin|loop-tail protein 2 homolog|strabismus 2|van Gogh-like protein 1|vang-like protein 1 20121230 -9606 81844 TRIM56 - RNF109 HGNC:19028|Ensembl:ENSG00000169871|HPRD:10284|Vega:OTTHUMG00000157032 7 7q22.1 tripartite motif containing 56 protein-coding TRIM56 tripartite motif containing 56 O E3 ubiquitin-protein ligase TRIM56|RING finger protein 109|tripartite motif-containing 56|tripartite motif-containing protein 56 20121230 -9606 81846 SBF2 - CMT4B2|DENND7B|MTMR13 HGNC:2135|MIM:607697|Ensembl:ENSG00000133812|HPRD:09649|Vega:OTTHUMG00000165890 11 11p15.4 SET binding factor 2 protein-coding SBF2 SET binding factor 2 O DENN/MADD domain containing 7B|myotubularin-related protein 13 20121230 -9606 81847 RNF146 - RP3-351K20.1|dJ351K20.1 HGNC:21336|MIM:612137|Ensembl:ENSG00000118518|Vega:OTTHUMG00000015522 6 6q22.1-q22.33 ring finger protein 146 protein-coding RNF146 ring finger protein 146 O 2610509H23Rik|E3 ubiquitin-protein ligase RNF146|dactylidin|iduna 20121230 -9606 81848 SPRY4 - - HGNC:15533|MIM:607984|Ensembl:ENSG00000187678|HPRD:10466|Vega:OTTHUMG00000129663 5 5q31.3 sprouty homolog 4 (Drosophila) protein-coding SPRY4 sprouty homolog 4 (Drosophila) O protein sprouty homolog 4|spry-4 20121230 -9606 81849 ST6GALNAC5 RP4-564M11.3 SIAT7E|ST6GalNAcV HGNC:19342|MIM:610134|Ensembl:ENSG00000117069|HPRD:15342|Vega:OTTHUMG00000009687 1 1p31.1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 O GD1 alpha synthase|GalNAc alpha-2,6-sialyltransferase V|SIAT7-E|ST6 neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5|ST6GalNAc V|alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5|alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase V|alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase E|sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) E|sialyltransferase 7 (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) E|sialyltransferase 7E 20121230 -9606 81850 KRTAP1-3 - KAP1.2|KAP1.3|KAP1.6|KAP1.8A|KAP1.8B|KAP1.9|KRTAP1.3 HGNC:16771|MIM:608820|Ensembl:ENSG00000221880|HPRD:12305|Vega:OTTHUMG00000133583 17 17q12-q21 keratin associated protein 1-3 protein-coding KRTAP1-3 keratin associated protein 1-3 O keratin associated protein 1.6|keratin-associated protein 1-3|keratin-associated protein 1.8|keratin-associated protein 1.9 20121230 -9606 81851 KRTAP1-1 - HB2A|KAP1.1|KAP1.1A|KAP1.1B|KAP1.6|KAP1.7|KRTAP1.1|KRTAP1A|hKAP1.7 HGNC:16772|MIM:608819|Ensembl:ENSG00000188581|HPRD:12304|Vega:OTTHUMG00000133592 17 17q12 keratin associated protein 1-1 protein-coding KRTAP1-1 keratin associated protein 1-1 O high sulfur keratin-associated protein 1.1|keratin associated protein 1.7|keratin associated protein 1A|keratin-associated protein 1-1|keratin-associated protein 1.1|keratin-associated protein 1.6|keratin-associated protein 1.7 20121230 -9606 81853 TMEM14B RP3-417M14.1 - HGNC:21384|Ensembl:ENSG00000137210|HPRD:15523|Vega:OTTHUMG00000014246 6 6p25.1-p23 transmembrane protein 14B protein-coding TMEM14B transmembrane protein 14B O - 20121230 -9606 81854 ZNF205-AS1 - - HGNC:28586 16 16p13.3 ZNF205 antisense RNA 1 miscRNA ZNF205-AS1 ZNF205 antisense RNA 1 O - 20121230 -9606 81855 SFXN3 RP11-108L7.3 BA108L7.2|SFX3 HGNC:16087|Ensembl:ENSG00000107819|HPRD:15329|Vega:OTTHUMG00000018921 10 10q24.31 sideroflexin 3 protein-coding SFXN3 sideroflexin 3 O sideroflexin-3 20121230 -9606 81856 ZNF611 - - HGNC:28766|Ensembl:ENSG00000213020|HPRD:15872|Vega:OTTHUMG00000154908 19 19q13.41 zinc finger protein 611 protein-coding ZNF611 zinc finger protein 611 O - 20121230 -9606 81857 MED25 TCBAP0758 ACID1|ARC92|CMT2B2|P78|PTOV2 HGNC:28845|MIM:610197|Ensembl:ENSG00000104973|HPRD:14380 19 19q13.3 mediator complex subunit 25 protein-coding MED25 mediator complex subunit 25 O ARC/mediator transcriptional coactivator subunit|activator interaction domain-containing protein 1|activator-recruited cofactor 92 kDa component|mediator of RNA polymerase II transcription subunit 25|mediator of RNA polymerase II transcription, subunit 25 homolog|prostate-derived protein 78 kDa 20121230 -9606 81858 SHARPIN PSEC0216 SIPL1 HGNC:25321|MIM:611885|Ensembl:ENSG00000179526|HPRD:15463|Vega:OTTHUMG00000165243 8 8q24.3 SHANK-associated RH domain interactor protein-coding SHARPIN SHANK-associated RH domain interactor O hSIPL1|shank-associated RH domain-interacting protein|shank-interacting protein-like 1|sharpin 20121230 -9606 81861 LPRS1 - LPRS MIM:609888 10 10p13 Leprosy, susceptibility to 1 unknown - - - - 20120622 -9606 81863 CTPL1 - CAAR HGNC:30997|MIM:605749 9 9q13-q22 cataract, pulverulent (autosomal recessive, early-onset) unknown CTPL1 cataract, pulverulent (autosomal recessive, early-onset) O - 20120622 -9606 81864 EVR3 - - HGNC:32785|MIM:605750 11 11p13-p12 exudative vitreoretinopathy 3 unknown EVR3 exudative vitreoretinopathy 3 O - 20120622 -9606 81865 BFIC2 - - MIM:605751 - - Benign familial infantile convulsions-2 unknown - - - - 20121123 -9606 81866 NDIC - - MIM:605779 17 17p13 Nail dysplasia, isolated congenital unknown - - - - 20120622 -9606 81870 KRTAP9-9 - KAP9.5|KAP9.9|KRTAP9-5|KRTAP9.9 HGNC:16773|Ensembl:ENSG00000198083|Vega:OTTHUMG00000133602 17 17q21.2 keratin associated protein 9-9 protein-coding KRTAP9-9 keratin associated protein 9-9 O keratin-associated protein 9-5|keratin-associated protein 9-9|keratin-associated protein 9.5|ultrahigh sulfur keratin-associated protein 9.9 20121230 -9606 81871 KRTAP4-6 - KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 HGNC:18909|Ensembl:ENSG00000198090|Vega:OTTHUMG00000133634 17 17q12-q21 keratin associated protein 4-6 protein-coding KRTAP4-6 keratin associated protein 4-6 O keratin associated protein 4-15|keratin-associated protein 4-6|keratin-associated protein 4.6|ultrahigh sulfur keratin-associated protein 4.15 20121230 -9606 81872 KRTAP2-1 hCG_2005477 KAP2.1A|KRTAP2.1A HGNC:16775|Ensembl:ENSG00000212725|Vega:OTTHUMG00000171405 17 17q12-q21 keratin associated protein 2-1 protein-coding KRTAP2-1 keratin associated protein 2-1 O high sulfur keratin-associated protein 2.1|keratin associated protein KRTAP2.1A|keratin-associated protein 2-1|keratin-associated protein 2.1 20121230 -9606 81873 ARPC5L RP11-175D17.1 ARC16-2 HGNC:23366|Ensembl:ENSG00000136950|HPRD:12490|Vega:OTTHUMG00000020660 9 9q33.3 actin related protein 2/3 complex, subunit 5-like protein-coding ARPC5L actin related protein 2/3 complex, subunit 5-like O actin-related protein 2/3 complex subunit 5-like protein|arp2/3 complex 16 kDa subunit 2 20121230 -9606 81875 ISG20L2 HSD38 - HGNC:25745|MIM:611930|Ensembl:ENSG00000143319|HPRD:07788|Vega:OTTHUMG00000041301 1 1q23.1 interferon stimulated exonuclease gene 20kDa-like 2 protein-coding ISG20L2 interferon stimulated exonuclease gene 20kDa-like 2 O interferon-stimulated 20 kDa exonuclease-like 2 20121230 -9606 81876 RAB1B - - HGNC:18370|MIM:612565|Ensembl:ENSG00000174903|HPRD:11469|Vega:OTTHUMG00000166916 11 11q12 RAB1B, member RAS oncogene family protein-coding RAB1B RAB1B, member RAS oncogene family O ras-related protein Rab-1B|small GTP-binding protein 20121230 -9606 81887 LAS1L RP3-475B7.2 Las1-like|dJ475B7.2 HGNC:25726|Ensembl:ENSG00000001497|HPRD:06519|Vega:OTTHUMG00000021720 X Xq12 LAS1-like (S. cerevisiae) protein-coding LAS1L LAS1-like (S. cerevisiae) O protein LAS1 homolog|ribosomal biogenesis protein LAS1L 20121230 -9606 81888 HYI RP11-506B15.5 HT036 HGNC:26948|Ensembl:ENSG00000178922|HPRD:11039|Vega:OTTHUMG00000007502 1 1p34.2 hydroxypyruvate isomerase (putative) protein-coding HYI hydroxypyruvate isomerase (putative) O endothelial cell apoptosis protein E-CE1|hydroxypyruvate isomerase homolog|putative hydroxypyruvate isomerase 20121230 -9606 81889 FAHD1 AC012180.10-002 C16orf36|YISKL HGNC:14169|Ensembl:ENSG00000180185|HPRD:13286|Vega:OTTHUMG00000128663 16 16p13.3 fumarylacetoacetate hydrolase domain containing 1 protein-coding FAHD1 fumarylacetoacetate hydrolase domain containing 1 O YISK like/RJD15|acylpyruvase FAHD1, mitochondrial|fumarylacetoacetate hydrolase domain-containing protein 1|yisK-like protein 20121230 -9606 81890 QTRT1 - FP3235|TGT|TGUT HGNC:23797|MIM:609615|Ensembl:ENSG00000213339|HPRD:17943|Vega:OTTHUMG00000180588 19 19p13.3 queuine tRNA-ribosyltransferase 1 protein-coding QTRT1 queuine tRNA-ribosyltransferase 1 O TGT, 43-KD subunit|TGT, catalytic subunit|guanine insertion enzyme|queuine tRNA-ribosyltransferase|tRNA-guanine transglycosylase 20121230 -9606 81892 SLIRP DC23 C14orf156|DC50|PD04872 HGNC:20495|MIM:610211|Ensembl:ENSG00000119705|HPRD:12639|Vega:OTTHUMG00000171526 14 14q24.3 SRA stem-loop interacting RNA binding protein protein-coding SLIRP SRA stem-loop interacting RNA binding protein O SRA stem-loop-interacting RNA-binding protein, mitochondrial 20121230 -9606 81893 SLC7A5P1 - DC49|LAT1-3TM|MLAS|hLAT1-3TM HGNC:29458|HPRD:13964 16 16p11.2 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo SLC7A5P1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 O LAT1-3TM protein 1 20121230 -9606 81894 SLC25A28 NPD016 MFRN2|MRS3/4|MRS4L HGNC:23472|MIM:609767|Ensembl:ENSG00000155287|Vega:OTTHUMG00000018886 10 10q24.2 solute carrier family 25 (mitochondrial iron transporter), member 28 protein-coding SLC25A28 solute carrier family 25 (mitochondrial iron transporter), member 28 O hMRS3/4|mitochondrial RNA splicing protein 3/4|mitochondrial RNA-splicing protein 3/4 homolog|mitochondrial iron transporter 2|mitoferrin 2|mitoferrin-2|putative mitochondrial solute carrier|solute carrier family 25, member 28 20121230 -9606 81926 FAM108A1 - C19orf27 HGNC:28756|Ensembl:ENSG00000129968|HPRD:07475|Vega:OTTHUMG00000171872 19 19p13.3 family with sequence similarity 108, member A1 protein-coding FAM108A1 family with sequence similarity 108, member A1 O abhydrolase domain-containing protein FAM108A1 20121230 -9606 81928 CABLES2 RP5-908M14.2 C20orf150|dJ908M14.2|ik3-2 HGNC:16143|Ensembl:ENSG00000149679|HPRD:12994|Vega:OTTHUMG00000032912 20 20q13.33 Cdk5 and Abl enzyme substrate 2 protein-coding CABLES2 Cdk5 and Abl enzyme substrate 2 O CDK5 and ABL1 enzyme substrate 2|interactor with CDK3 2 20121230 -9606 81929 SEH1L - SEC13L|SEH1A|SEH1B|Seh1 HGNC:30379|MIM:609263|Ensembl:ENSG00000085415|HPRD:15319|Vega:OTTHUMG00000181909 18 18p11.21 SEH1-like (S. cerevisiae) protein-coding SEH1L SEH1-like (S. cerevisiae) O nucleoporin SEH1|nup107-160 subcomplex subunit SEH1|sec13 like protein|sec13-like protein 20121230 -9606 81930 KIF18A OK/SW-cl.108 MS-KIF18A HGNC:29441|MIM:611271|Ensembl:ENSG00000121621|HPRD:11177|Vega:OTTHUMG00000166195 11 11p14.1 kinesin family member 18A protein-coding KIF18A kinesin family member 18A O kinesin-like protein KIF18A 20121230 -9606 81931 ZNF93 - HPF34|HTF34|TF34|ZNF505 HGNC:13169|MIM:603975|Ensembl:ENSG00000184635|HPRD:10334|Vega:OTTHUMG00000182371 19 19p12 zinc finger protein 93 protein-coding ZNF93 zinc finger protein 93 O zinc finger protein 505|zinc finger protein HTF34 20121230 -9606 81932 HDHD3 - 2810435D12Rik|C9orf158 HGNC:28171|Ensembl:ENSG00000119431|HPRD:13641|Vega:OTTHUMG00000020524 9 9q32 haloacid dehalogenase-like hydrolase domain containing 3 protein-coding HDHD3 haloacid dehalogenase-like hydrolase domain containing 3 O haloacid dehalogenase-like hydrolase domain-containing protein 3 20121230 -9606 81993 COX17P1 RP11-189B4.3 COX17P HGNC:24341 13 13q14.13 cytochrome c oxidase assembly homolog 17 (yeast) pseudogene 1 pseudo COX17P1 cytochrome c oxidase assembly homolog 17 (yeast) pseudogene 1 O - 20121230 -9606 82500 PKP2P1 - - HGNC:13413 12 12p13 plakophilin 2 pseudogene 1 pseudo PKP2P1 plakophilin 2 pseudogene 1 O - 20121230 -9606 83259 PCDH11Y - PCDH-PC|PCDH22|PCDHY HGNC:15813|MIM:400022|Ensembl:ENSG00000099715|HPRD:11847|Vega:OTTHUMG00000035105 Y Yp11.2 protocadherin 11 Y-linked protein-coding PCDH11Y protocadherin 11 Y-linked O PCDH-Y|protocadherin 22|protocadherin Y|protocadherin on the Y chromosome|protocadherin prostate cancer|protocadherin-11 Y-linked|protocadherin-22|protocadherin-PC 20121230 -9606 83394 PITPNM3 - CORD5|NIR1|RDGBA3 HGNC:21043|MIM:608921|Ensembl:ENSG00000091622|HPRD:07498|Vega:OTTHUMG00000102039 17 17p13 PITPNM family member 3 protein-coding PITPNM3 PITPNM family member 3 O NIR-1|PITPnm 3|PYK2 N-terminal domain-interacting receptor 1|membrane-associated phosphatidylinositol transfer protein 3|phosphatidylinositol transfer protein, membrane-associated 3|retinal degeneration B alpha 3 20121230 -9606 83401 ELOVL3 - CIG-30|CIG30 HGNC:18047|MIM:611815|Ensembl:ENSG00000119915|HPRD:16858|Vega:OTTHUMG00000018951 10 10q24.32 ELOVL fatty acid elongase 3 protein-coding ELOVL3 ELOVL fatty acid elongase 3 O 3-keto acyl-CoA synthase ELOVL3|ELOVL FA elongase 3|cold-inducible glycoprotein of 30 kDa|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3|elongation of very long chain fatty acids protein 3 20121230 -9606 83416 FCRL5 RP11-217A12.1 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 HGNC:18508|MIM:605877|Ensembl:ENSG00000143297|HPRD:16169|Vega:OTTHUMG00000017481 1 1q21 Fc receptor-like 5 protein-coding FCRL5 Fc receptor-like 5 O Fc receptor-like protein 5|fc receptor homolog 5|fcR-like protein 5|immune receptor translocation-associated protein 2|immunoglobulin superfamily receptor translocation associated 2 (IRTA2) 20121230 -9606 83417 FCRL4 - CD307d|FCRH4|IGFP2|IRTA1 HGNC:18507|MIM:605876|Ensembl:ENSG00000163518|HPRD:16168|Vega:OTTHUMG00000035488 1 1q21 Fc receptor-like 4 protein-coding FCRL4 Fc receptor-like 4 O Fc receptor-like protein 4|IFGP family protein 2|fc receptor homolog 4|fcR-like protein 4|hIFGP2|immune receptor translocation-associated protein 1|immunoglobulin superfamily Fc receptor, gp42|immunoglobulin superfamily receptor translocation associated 1 20121230 -9606 83439 TCF7L1 - TCF-3|TCF3 HGNC:11640|MIM:604652|Ensembl:ENSG00000152284|HPRD:06874|Vega:OTTHUMG00000130026 2 2p11.2 transcription factor 7-like 1 (T-cell specific, HMG-box) protein-coding TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box) O HMG box transcription factor 3|transcription factor 7-like 1 20121230 -9606 83440 ADPGK PSEC0260 2610017G09Rik|ADP-GK HGNC:25250|MIM:611861|Ensembl:ENSG00000159322|HPRD:12429|Vega:OTTHUMG00000172777 15 15q24.1 ADP-dependent glucokinase protein-coding ADPGK ADP-dependent glucokinase O ATP-dependent glucokinase|rbBP-35 20121230 -9606 83442 SH3BGRL3 RP11-569G9.2 SH3BP-1|TIP-B1 HGNC:15568|Ensembl:ENSG00000142669|HPRD:15332|Vega:OTTHUMG00000003381 1 1p36.11 SH3 domain binding glutamic acid-rich protein like 3 protein-coding SH3BGRL3 SH3 domain binding glutamic acid-rich protein like 3 O SH3 domain-binding glutamic acid-rich-like protein 3|SH3 domain-binding protein 1|SH3BGRL3-like protein|TNF inhibitory protein 20121230 -9606 83443 SF3B5 RP1-197L1.2 SF3b10|Ysf3 HGNC:21083|Ensembl:ENSG00000169976|HPRD:18042|Vega:OTTHUMG00000015737 6 6q24.2 splicing factor 3b, subunit 5, 10kDa protein-coding SF3B5 splicing factor 3b, subunit 5, 10kDa O pre-mRNA-splicing factor SF3b 10 kDa subunit|splicing factor 3B subunit 5 20121230 -9606 83444 INO80B - HMGA1L4|HMGIYL4|IES2|PAP-1BP|PAPA-1|ZNHIT4|hIes2 HGNC:13324|Ensembl:ENSG00000115274|HPRD:17110|Vega:OTTHUMG00000129959 2 2p13.1 INO80 complex subunit B protein-coding INO80B INO80 complex subunit B O IES2 homolog|PAP (Pim-1 associated protein) associated protein 1|PAP-1 binding protein|PAP-1-associated protein 1|high mobility group AT-hook 1-like 4|zinc finger HIT domain-containing protein 4|zinc finger, HIT type 4 20121230 -9606 83445 GSG1 hCG_28221 - HGNC:19716|Ensembl:ENSG00000111305|HPRD:11015|Vega:OTTHUMG00000150148 12 12p13.1 germ cell associated 1 protein-coding GSG1 germ cell associated 1 O germ cell-specific gene 1 protein 20121230 -9606 83446 CCDC70 - - HGNC:25303|Ensembl:ENSG00000123171|HPRD:13158|Vega:OTTHUMG00000016950 13 13q14.3 coiled-coil domain containing 70 protein-coding CCDC70 coiled-coil domain containing 70 O coiled-coil domain-containing protein 70 20121230 -9606 83447 SLC25A31 - AAC4|ANT4|SFEC35kDa HGNC:25319|MIM:610796|Ensembl:ENSG00000151475|HPRD:13160|Vega:OTTHUMG00000133300 4 4q28.1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 protein-coding SLC25A31 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 O ADP,ATP carrier protein 4|ADP/ATP translocase 4|ANT 4|adenine nucleotide translocase 4|adenine nucleotide translocator 4|solute carrier family 25 member 31|sperm flagellar energy carrier protein 20121230 -9606 83448 PUS7L - - HGNC:25276|Ensembl:ENSG00000129317|HPRD:13189|Vega:OTTHUMG00000169423 12 12q12 pseudouridylate synthase 7 homolog (S. cerevisiae)-like protein-coding PUS7L pseudouridylate synthase 7 homolog (S. cerevisiae)-like O pseudouridylate synthase 7 homolog-like protein 20121230 -9606 83449 PMFBP1 - - HGNC:17728|Ensembl:ENSG00000118557|HPRD:10157|Vega:OTTHUMG00000167827 16 16q22.2 polyamine modulated factor 1 binding protein 1 protein-coding PMFBP1 polyamine modulated factor 1 binding protein 1 O PMF-1 binding protein|PMF-1-binding protein|polyamine-modulated factor 1-binding protein 1 20121230 -9606 83450 LRRC48 - - HGNC:25384|Ensembl:ENSG00000171962|HPRD:13181|Vega:OTTHUMG00000059355 17 17p11.2 leucine rich repeat containing 48 protein-coding LRRC48 leucine rich repeat containing 48 O leucine-rich repeat-containing protein 48 20121230 -9606 83451 ABHD11 PP1226 WBSCR21 HGNC:16407|Ensembl:ENSG00000106077|HPRD:15658|Vega:OTTHUMG00000130029 7 7q11.23 abhydrolase domain containing 11 protein-coding ABHD11 abhydrolase domain containing 11 O Williams Beuren syndrome chromosome region 21|abhydrolase domain-containing protein 11|williams-Beuren syndrome chromosomal region 21 protein 20121230 -9606 83452 RAB33B - - HGNC:16075|MIM:605950|Ensembl:ENSG00000172007|HPRD:05808|Vega:OTTHUMG00000133384 4 4q28 RAB33B, member RAS oncogene family protein-coding RAB33B RAB33B, member RAS oncogene family O ras-related protein Rab-33B 20121230 -9606 83460 EMC6 - TMEM93 HGNC:28430|Ensembl:ENSG00000127774|HPRD:14529|Vega:OTTHUMG00000180187 17 17p13.2 ER membrane protein complex subunit 6 protein-coding EMC6 ER membrane protein complex subunit 6 O transmembrane protein 93 20121230 -9606 83461 CDCA3 - GRCC8|TOME-1 HGNC:14624|MIM:607749|Ensembl:ENSG00000111665|HPRD:09670|Vega:OTTHUMG00000169014 12 12p13 cell division cycle associated 3 protein-coding CDCA3 cell division cycle associated 3 O cell division cycle-associated protein 3|gene rich cluster, C8|gene-rich cluster protein C8|trigger of mitotic entry 1|trigger of mitotic entry protein 1 20121230 -9606 83463 MXD3 - BHLHC13|MAD3|MYX HGNC:14008|MIM:609450|Ensembl:ENSG00000213347|HPRD:14791|Vega:OTTHUMG00000130854 5 5q35.3 MAX dimerization protein 3 protein-coding MXD3 MAX dimerization protein 3 O Max-associated protein 3|Max-interacting transcriptional repressor MAD3|class C basic helix-loop-helix protein 13|max dimerization protein 3|max dimerizer 3 20121230 -9606 83464 APH1B UNQ688/PRO1328 APH-1B|PRO1328|PSFL|TAAV688 HGNC:24080|MIM:607630|Ensembl:ENSG00000138613|HPRD:06361|Vega:OTTHUMG00000132863 15 15q22.2 anterior pharynx defective 1 homolog B (C. elegans) protein-coding APH1B anterior pharynx defective 1 homolog B (C. elegans) O aph-1beta|gamma-secretase subunit APH-1B 20121230 -9606 83468 GLT8D2 UNQ1901/PRO4347 - HGNC:24890|Ensembl:ENSG00000120820|HPRD:14260|Vega:OTTHUMG00000170120 12 12q glycosyltransferase 8 domain containing 2 protein-coding GLT8D2 glycosyltransferase 8 domain containing 2 O glycosyltransferase 8 domain-containing protein 2|gycosyltransferase 20121230 -9606 83473 KATNAL2 - - HGNC:25387|MIM:614697|Ensembl:ENSG00000167216|HPRD:13754|Vega:OTTHUMG00000179408 18 18q21.1 katanin p60 subunit A-like 2 protein-coding KATNAL2 katanin p60 subunit A-like 2 O katanin p60 ATPase-containing subunit A-like 2|p60 katanin-like 2 20121230 -9606 83475 DOHH - HLRC1|hDOHH HGNC:28662|MIM:611262|Ensembl:ENSG00000129932|HPRD:14627|Vega:OTTHUMG00000180762 19 19p13.3 deoxyhypusine hydroxylase/monooxygenase protein-coding DOHH deoxyhypusine hydroxylase/monooxygenase O HEAT-like (PBS lyase) repeat containing 1|HEAT-like repeat-containing protein 1|deoxyhypusine dioxygenase|deoxyhypusine hydroxylase|deoxyhypusine monooxygenase 20121230 -9606 83478 ARHGAP24 - FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP HGNC:25361|MIM:610586|Ensembl:ENSG00000138639|HPRD:09804|Vega:OTTHUMG00000130427 4 4q22.1 Rho GTPase activating protein 24 protein-coding ARHGAP24 Rho GTPase activating protein 24 O RAC1- and CDC42-specific GTPase-activating protein of 72 kDa|filamin-A-associated RhoGAP|rho GTPase-activating protein 24|rho-type GTPase-activating protein 24|rhoGAP of 73 kDa|sarcoma antigen NY-SAR-88 20121230 -9606 83479 DDX59 RP11-92G12.2 ZNHIT5 HGNC:25360|Ensembl:ENSG00000118197|HPRD:10893|Vega:OTTHUMG00000035725 1 1q32.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 protein-coding DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 O DEAD box protein 59|probable ATP-dependent RNA helicase DDX59|zinc finger HIT domain-containing protein 5 20121230 -9606 83480 PUS3 FKSG32 2610020J05Rik HGNC:25461|Ensembl:ENSG00000110060|HPRD:15195|Vega:OTTHUMG00000165870 11 11q24.2 pseudouridylate synthase 3 protein-coding PUS3 pseudouridylate synthase 3 O tRNA pseudouridine synthase 3|tRNA pseudouridine(38/39) synthase|tRNA pseudouridylate synthase 3|tRNA-uridine isomerase 3 20121230 -9606 83481 EPPK1 - EPIPL|EPIPL1 HGNC:15577|MIM:607553|HPRD:06500 8 8q24.3 epiplakin 1 protein-coding EPPK1 epiplakin 1 O 450 kDa epidermal antigen|epidermal autoantigen 450K|epiplakin 20121230 -9606 83482 SCRT1 hCG_1747870 SCRT|ZNF898 HGNC:15950|MIM:605858|Ensembl:ENSG00000170616|HPRD:16166|Vega:OTTHUMG00000165229 8 8q24.3 scratch homolog 1, zinc finger protein (Drosophila) protein-coding SCRT1 scratch homolog 1, zinc finger protein (Drosophila) O scratch 1|scratch homolog 1 zinc finger protein|transcriptional repressor scratch 1 20121230 -9606 83483 PLVAP - FELS|PV-1|PV1|gp68 HGNC:13635|MIM:607647|Ensembl:ENSG00000130300|HPRD:09626 19 19p13.2 plasmalemma vesicle associated protein protein-coding PLVAP plasmalemma vesicle associated protein O fenestrated endothelial-linked structure protein|fenestrated-endothelial linked structure protein; PV-1 protein|plasmalemma vesicle protein 1|plasmalemma vesicle-associated protein 20121230 -9606 83528 CYP51P1 - - HGNC:20245 3 3p12.2 cytochrome P450, family 51, pseudogene 1 pseudo CYP51P1 cytochrome P450, family 51, pseudogene 1 O - 20121230 -9606 83530 CYP51P2 - - HGNC:20251 13 13q12.3 cytochrome P450, family 51, pseudogene 2 pseudo CYP51P2 cytochrome P450, family 51, pseudogene 2 O - 20121230 -9606 83538 TTC25 - - HGNC:25280|HPRD:10888 17 17q21.2 tetratricopeptide repeat domain 25 protein-coding TTC25 tetratricopeptide repeat domain 25 O TPR repeat protein 25|tetratricopeptide repeat protein 25 20121230 -9606 83539 CHST9 UNQ2549/PRO6175 GALNAC4ST-2 HGNC:19898|MIM:610191|Ensembl:ENSG00000154080|Vega:OTTHUMG00000179469 18 18q11.2 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 protein-coding CHST9 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 O GalNAc-4-sulfotransferase 2|N-acetylgalactosamine 4-O-sulfotransferase 2|carbohydrate sulfotransferase 9|galNAc-4-O-sulfotransferase 2 20121230 -9606 83540 NUF2 - CDCA1|CT106|NUF2R HGNC:14621|MIM:611772|Ensembl:ENSG00000143228|HPRD:10817|Vega:OTTHUMG00000034275 1 1q23.3 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) protein-coding NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) O cancer/testis antigen 106|cell division cycle associated 1|cell division cycle-associated protein 1|hNuf2|hNuf2R|hsNuf2|kinetochore protein Nuf2 20121230 -9606 83541 FAM110A - C20orf55|F10|bA371L19.3 HGNC:16188|MIM:611393|Ensembl:ENSG00000125898|HPRD:12775|Vega:OTTHUMG00000031649 20 20p13 family with sequence similarity 110, member A protein-coding FAM110A family with sequence similarity 110, member A O protein FAM110A 20121230 -9606 83543 AIF1L RP11-544A12.2 C9orf58|IBA2 HGNC:28904|Ensembl:ENSG00000126878|HPRD:12967|Vega:OTTHUMG00000020817 9 9q34.13-q34.3 allograft inflammatory factor 1-like protein-coding AIF1L allograft inflammatory factor 1-like O ionized calcium binding adapter molecule 2|ionized calcium-binding adapter molecule 2 20121230 -9606 83544 DNAL1 - C14orf168|CILD16 HGNC:23247|MIM:610062|Ensembl:ENSG00000119661|HPRD:16616|Vega:OTTHUMG00000171642 14 14q24.3 dynein, axonemal, light chain 1 protein-coding DNAL1 dynein, axonemal, light chain 1 O dynein light chain 1, axonemal 20121230 -9606 83546 RTBDN - - HGNC:30310|MIM:609553|Ensembl:ENSG00000132026|HPRD:18007|Vega:OTTHUMG00000180482 19 19p12 retbindin protein-coding RTBDN retbindin O - 20121230 -9606 83547 RILP PP10141 - HGNC:30266|MIM:607848|Ensembl:ENSG00000167705|HPRD:09706|Vega:OTTHUMG00000090554 17 17p13.3 Rab interacting lysosomal protein protein-coding RILP Rab interacting lysosomal protein O rab-interacting lysosomal protein 20121230 -9606 83548 COG3 - SEC34 HGNC:18619|MIM:606975|Ensembl:ENSG00000136152|HPRD:08443|Vega:OTTHUMG00000016855 13 13q14.13 component of oligomeric golgi complex 3 protein-coding COG3 component of oligomeric golgi complex 3 O COG complex subunit 3|conserved oligomeric Golgi complex subunit 3|p94|tethering factor SEC34|vesicle-docking protein SEC34 homolog 20121230 -9606 83549 UCK1 RP11-334J6.5 URK1 HGNC:14859|MIM:609328|Ensembl:ENSG00000130717|HPRD:18256|Vega:OTTHUMG00000020823 9 9q34.13 uridine-cytidine kinase 1 protein-coding UCK1 uridine-cytidine kinase 1 O UCK 1|cytidine monophosphokinase 1|uridine monophosphokinase 1 20121230 -9606 83550 GPR101 - GPCR6 HGNC:14963|MIM:300393|Ensembl:ENSG00000165370|HPRD:02315|Vega:OTTHUMG00000022521 X Xq26.3 G protein-coupled receptor 101 protein-coding GPR101 G protein-coupled receptor 101 O probable G-protein coupled receptor 101 20121230 -9606 83551 TAAR8 - GPR102|TA5|TAR5|TRAR5|TaR-5|TaR-8 HGNC:14964|MIM:606927|Ensembl:ENSG00000146385|HPRD:09496|Vega:OTTHUMG00000015586 6 6q23.2 trace amine associated receptor 8 protein-coding TAAR8 trace amine associated receptor 8 O G protein-coupled receptor 102|G-protein coupled receptor 102|trace amine receptor 5|trace amine receptor 8|trace amine-associated receptor 8 20121230 -9606 83552 MFRP - MCOP5|NNO2|RD6 HGNC:18121|MIM:606227|Ensembl:ENSG00000235718|Ensembl:ENSG00000259159|HPRD:06941|Vega:OTTHUMG00000166199|Vega:OTTHUMG00000171803 11 11q23 membrane frizzled-related protein protein-coding MFRP membrane frizzled-related protein O membrane-type frizzled-related protein 20121230 -9606 83590 TMUB1 SB144 C7orf21|DULP HGNC:21709|MIM:614792|Ensembl:ENSG00000164897|HPRD:12910|Vega:OTTHUMG00000158621 7 7q36.1 transmembrane and ubiquitin-like domain containing 1 protein-coding TMUB1 transmembrane and ubiquitin-like domain containing 1 O dendritic cell-derived ubiquitin-like protein|hepatocyte odd protein shuttling protein|transmembrane and ubiquitin-like domain-containing protein 1|ubiquitin-like protein DULP|ubiquitin-like protein SB144 20121230 -9606 83591 THAP2 - - HGNC:20854|MIM:612531|Ensembl:ENSG00000173451|HPRD:10896|Vega:OTTHUMG00000169556 12 12q21.1 THAP domain containing, apoptosis associated protein 2 protein-coding THAP2 THAP domain containing, apoptosis associated protein 2 O THAP domain-containing protein 2 20121230 -9606 83592 AKR1E2 - AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR HGNC:23437|Ensembl:ENSG00000165568|HPRD:07472|Vega:OTTHUMG00000017577 10 10p15.1 aldo-keto reductase family 1, member E2 protein-coding AKR1E2 aldo-keto reductase family 1, member E2 O 1,5-anhydro-D-fructose reductase|AF reductase|aldo-keto reductase family 1 member C-like protein 2|aldo-keto reductase family 1, member C-like 2|aldo-keto reductase loopADR|testis-specific protein 20121230 -9606 83593 RASSF5 RP11-343H5.1 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 HGNC:17609|MIM:607020|Ensembl:ENSG00000136653|HPRD:06117|Vega:OTTHUMG00000036343 1 1q32.1 Ras association (RalGDS/AF-6) domain family member 5 protein-coding RASSF5 Ras association (RalGDS/AF-6) domain family member 5 O Rap1-binding protein|Ras association (RalGDS/AF-6) domain family 5|Ras effector-like protein|new ras effector 1|novel Ras effector 1|ras association domain-containing protein 5|regulator for cell adhesion and polarization enriched in lymphoid tissue|tumor suppressor RASSF3 20121230 -9606 83594 NUDT12 - - HGNC:18826|MIM:609232|Ensembl:ENSG00000112874|HPRD:10123|Vega:OTTHUMG00000128739 5 5q21.2 nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding NUDT12 nudix (nucleoside diphosphate linked moiety X)-type motif 12 O nucleoside diphosphate linked moiety X-type motif 12|nucleoside diphosphate-linked moiety X motif 12|nudix motif 12|peroxisomal NADH pyrophosphatase NUDT12 20121230 -9606 83595 SOX7 - - HGNC:18196|MIM:612202|Ensembl:ENSG00000171056|HPRD:18087|Vega:OTTHUMG00000090585 8 8p22 SRY (sex determining region Y)-box 7 protein-coding SOX7 SRY (sex determining region Y)-box 7 O SOX7 transcription factor|transcription factor SOX-7 20121230 -9606 83596 BCL2L12 - - HGNC:13787|MIM:610837|Ensembl:ENSG00000126453|HPRD:16543 19 19q13.3 BCL2-like 12 (proline rich) protein-coding BCL2L12 BCL2-like 12 (proline rich) O Bcl-2 related proline-rich protein|bcl-2-like protein 12|bcl-2-related proline-rich protein|bcl2-L-12 20121230 -9606 83597 RTP3 - LTM1|TMEM7 HGNC:15572|MIM:607181|Ensembl:ENSG00000163825|HPRD:06214|Vega:OTTHUMG00000133483 3 3p21.3 receptor (chemosensory) transporter protein 3 protein-coding RTP3 receptor (chemosensory) transporter protein 3 O receptor transporter protein 3|receptor transporting protein 3|receptor-transporting protein 3|transmembrane protein 7 20121230 -9606 83598 LRRC2-AS1 - LUZP3|LUZP3P|LUZPP1 HGNC:15571 3 3p21.3 LRRC2 antisense RNA 1 miscRNA LRRC2-AS1 LRRC2 antisense RNA 1 O - 20121230 -9606 83604 TMEM47 - BCMP1|TM4SF10 HGNC:18515|MIM:300698|Ensembl:ENSG00000147027|HPRD:06741|Vega:OTTHUMG00000021343 X Xp11.4 transmembrane protein 47 protein-coding TMEM47 transmembrane protein 47 O brain cell membrane protein 1|transmembrane 4 superfamily member 10 20121230 -9606 83605 CCM2 PP10187 C7orf22|OSM HGNC:21708|MIM:607929|Ensembl:ENSG00000136280|HPRD:09719|Vega:OTTHUMG00000129246 7 7p13 cerebral cavernous malformation 2 protein-coding CCM2 cerebral cavernous malformation 2 O cerebral cavernous malformations 2 protein|malcavernin 20121230 -9606 83606 GUCD1 - C22orf13|LLN4 HGNC:14237|Ensembl:ENSG00000138867|HPRD:12796|Vega:OTTHUMG00000150728 22 22q11.2 guanylyl cyclase domain containing 1 protein-coding GUCD1 guanylyl cyclase domain containing 1 O CG13760 gene product [Drosophila melanogaster] homolog|uncharacterized protein C22orf13 20121230 -9606 83607 AMMECR1L - - HGNC:28658|Ensembl:ENSG00000144233|HPRD:14625|Vega:OTTHUMG00000131535 2 2q21 AMMECR1-like protein-coding AMMECR1L AMMECR1-like O AMME chromosomal region gene 1-like|AMMECR1-like protein 20121230 -9606 83608 C18orf21 PNAS-124 HsT3108|PNAS-131|XTP13 HGNC:28802|Ensembl:ENSG00000141428|HPRD:12688|Vega:OTTHUMG00000128531 18 18q12.2 chromosome 18 open reading frame 21 protein-coding C18orf21 chromosome 18 open reading frame 21 O HBV X-transactivated gene 13 protein|HBV X-transactivated protein 13|HBV XAg-transactivated protein 13|UPF0711 protein C18orf21 20121230 -9606 83636 C19orf12 - NBIA3 HGNC:25443|MIM:614297|Ensembl:ENSG00000131943|HPRD:12696|Vega:OTTHUMG00000149838 19 19q12 chromosome 19 open reading frame 12 protein-coding C19orf12 chromosome 19 open reading frame 12 O neurodegeneration with brain iron accumulation 3|protein C19orf12 20121230 -9606 83637 ZMIZ2 HRIHFB2007 NET27|TRAFIP20|ZIMP7|hZIMP7 HGNC:22229|MIM:611196|Ensembl:ENSG00000122515|HPRD:13225|Vega:OTTHUMG00000155817 7 7p13 zinc finger, MIZ-type containing 2 protein-coding ZMIZ2 zinc finger, MIZ-type containing 2 O PIAS-like protein Zimp7|zinc finger MIZ domain-containing protein 2 20121230 -9606 83638 C11orf68 - BLES03|P5326 HGNC:28801|Ensembl:ENSG00000175573|HPRD:12553|Vega:OTTHUMG00000157153 11 11q13.1 chromosome 11 open reading frame 68 protein-coding C11orf68 chromosome 11 open reading frame 68 O UPF0696 protein C11orf68|basophilic leukemia expressed protein BLES03|basophilic leukemia-expressed protein Bles03|protein p5326 20121230 -9606 83639 TEX101 UNQ867/PRO1884 CT131|GTPR867|NYD-SP8|PRO1884|SGRG|TES101RP HGNC:30722|MIM:612665|Ensembl:ENSG00000131126|HPRD:15490 19 19q13.31 testis expressed 101 protein-coding TEX101 testis expressed 101 O cancer/testis antigen 131|cell surface receptor NYD-SP8|scleroderma-associated autoantigen|spermatogenesis-related gene protein|testis expressed sequence 101|testis-expressed protein 101|testis-expressed sequence 101 protein|testis-specific protein TES101RP 20121230 -9606 83640 FAM103A1 - C15orf18|HsT19360|RAM HGNC:31022|MIM:614547|Ensembl:ENSG00000169612|HPRD:12845|Vega:OTTHUMG00000147357 15 15q25.2 family with sequence similarity 103, member A1 protein-coding FAM103A1 family with sequence similarity 103, member A1 O RNMT-activating mini protein|protein FAM103A1 20121230 -9606 83641 FAM107B RP11-153L18.1 C10orf45 HGNC:23726|Ensembl:ENSG00000065809|HPRD:12575|Vega:OTTHUMG00000017709 10 10p13 family with sequence similarity 107, member B protein-coding FAM107B family with sequence similarity 107, member B O protein FAM107B 20121230 -9606 83642 SELO RP3-402G11.5 - MIM:607917|Ensembl:ENSG00000073169|HPRD:07449|Vega:OTTHUMG00000044645 22 22q13.33 selenoprotein O protein-coding - - - - 20121230 -9606 83643 CCDC3 RP11-347I22.1 - HGNC:23813|Ensembl:ENSG00000151468|HPRD:13008|Vega:OTTHUMG00000017689 10 10p13 coiled-coil domain containing 3 protein-coding CCDC3 coiled-coil domain containing 3 O coiled-coil domain-containing protein 3|fat/vessel-derived secretory protein|favine 20121230 -9606 83647 LINC00529 - C8orf8 HGNC:15544 8 8p23-p22 long intergenic non-protein coding RNA 529 other LINC00529 long intergenic non-protein coding RNA 529 O - 20121021 -9606 83648 FAM167A - C8orf13|D8S265 HGNC:15549|MIM:610085|Ensembl:ENSG00000154319|HPRD:12924|Vega:OTTHUMG00000129361 8 8p23-p22 family with sequence similarity 167, member A protein-coding FAM167A family with sequence similarity 167, member A O protein FAM167A 20121230 -9606 83650 SLC35G5 - AMAC|AMAC1L2 HGNC:15546|Ensembl:ENSG00000177710|HPRD:09796|Vega:OTTHUMG00000090653 8 8p23.1 solute carrier family 35, member G5 protein-coding SLC35G5 solute carrier family 35, member G5 O acyl-malonyl condensing enzyme 1-like 2|acyl-malonyl-condensing enzyme 1-like protein 2|protein AMAC1L2|solute carrier family 35 member G5 20121230 -9606 83655 LINC00208 - C8orf14|NCRNA00208|VIR35 HGNC:15535 8 8p23.1 long intergenic non-protein coding RNA 208 miscRNA LINC00208 long intergenic non-protein coding RNA 208 O - 20121230 -9606 83656 C8orf12 - - HGNC:15548 8 8p23.1 chromosome 8 open reading frame 12 miscRNA C8orf12 chromosome 8 open reading frame 12 O - 20121230 -9606 83657 DYNLRB2 - DNCL2B|DNLC2B|ROBLD2 HGNC:15467|MIM:607168|Ensembl:ENSG00000168589|HPRD:06204|Vega:OTTHUMG00000137622 16 16q23.3 dynein, light chain, roadblock-type 2 protein-coding DYNLRB2 dynein, light chain, roadblock-type 2 O bithoraxoid-like protein|dynein light chain 2B, cytoplasmic|dynein light chain roadblock-type 2|dynein, cytoplasmic, light polypeptide 2B|roadblock domain containing 2|roadblock domain-containing protein 2 20121230 -9606 83658 DYNLRB1 HSPC162 BITH|BLP|DNCL2A|DNLC2A|ROBLD1 HGNC:15468|MIM:607167|Ensembl:ENSG00000125971|HPRD:06203|Vega:OTTHUMG00000032302 20 20q11.21 dynein, light chain, roadblock-type 1 protein-coding DYNLRB1 dynein, light chain, roadblock-type 1 O ROBL/LC7-like 1|Roadblock-1|bithoraxoid-like protein|cytoplasmic dynein light chain 2A|dynein light chain 2A, cytoplasmic|dynein light chain roadblock-type 1|dynein, cytoplasmic, light polypeptide 2A|dynein-associated protein HKM23|dynein-associated protein Km23|roadblock domain containing 1|roadblock domain-containing protein 1 20121230 -9606 83659 TEKT1 - - HGNC:15534|MIM:609002|Ensembl:ENSG00000167858|HPRD:10611|Vega:OTTHUMG00000102063 17 17p13.1 tektin 1 protein-coding TEKT1 tektin 1 O tektin-1 20121230 -9606 83660 TLN2 - ILWEQ HGNC:15447|MIM:607349|Ensembl:ENSG00000171914|HPRD:09555|Vega:OTTHUMG00000133679 15 15q15-q21 talin 2 protein-coding TLN2 talin 2 O talin-2 20121230 -9606 83661 MS4A8B - 4SPAN4|MS4A4 HGNC:13380|MIM:606549|Ensembl:ENSG00000166959|HPRD:08409|Vega:OTTHUMG00000167686 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 8B protein-coding MS4A8B membrane-spanning 4-domains, subfamily A, member 8B O four-span transmembrane protein 4|membrane-spanning 4-domains subfamily A member 8B 20121230 -9606 83666 PARP9 - ARTD9|BAL|BAL1|MGC:7868 HGNC:24118|MIM:612065|Ensembl:ENSG00000138496|HPRD:10686|Vega:OTTHUMG00000159522 3 3q21 poly (ADP-ribose) polymerase family, member 9 protein-coding PARP9 poly (ADP-ribose) polymerase family, member 9 O ADP-ribosyltransferase diphtheria toxin-like 9|PARP-9|b aggressive lymphoma protein|poly (ADP-ribose) polymerase 9|poly [ADP-ribose] polymerase 9 20121230 -9606 83667 SESN2 - HI95|SES2|SEST2 HGNC:20746|MIM:607767|Ensembl:ENSG00000130766|HPRD:06378|Vega:OTTHUMG00000003532 1 1p35.3 sestrin 2 protein-coding SESN2 sestrin 2 O hypoxia induced gene 95|sestrin-2 20121230 -9606 83690 CRISPLD1 UNQ342/PRO541 CRISP10|LCRISP1 HGNC:18206|Ensembl:ENSG00000121005|HPRD:16756|Vega:OTTHUMG00000164529 8 8q21.11 cysteine-rich secretory protein LCCL domain containing 1 protein-coding CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 O CRISP-10|CocoaCrisp|LCCL domain containing cysteine-rich secretory protein 1|LCCL domain-containing cysteine-rich secretory protein 1|cysteine-rich secretory protein 10|cysteine-rich secretory protein LCCL domain-containing 1|trypsin inhibitor Hl 20121230 -9606 83692 CD99L2 UNQ1964/PRO4486 CD99B|MIC2L1 HGNC:18237|MIM:300846|Ensembl:ENSG00000102181|Vega:OTTHUMG00000024247 X Xq28 CD99 molecule-like 2 protein-coding CD99L2 CD99 molecule-like 2 O CD99 antigen-like protein 2|MIC2 like 1|MIC2-like protein 1 20121230 -9606 83693 HSDL1 - SDR12C3 HGNC:16475|Ensembl:ENSG00000103160|HPRD:17117|Vega:OTTHUMG00000137635 16 16q23.3 hydroxysteroid dehydrogenase like 1 protein-coding HSDL1 hydroxysteroid dehydrogenase like 1 O inactive hydroxysteroid dehydrogenase-like protein 1|short chain dehydrogenase/reductase family 12C, member 3|steroid dehydrogenase-like protein 20121230 -9606 83694 RPS6KL1 - - HGNC:20222|Ensembl:ENSG00000198208|HPRD:18004|Vega:OTTHUMG00000171484 14 14q24.3 ribosomal protein S6 kinase-like 1 protein-coding RPS6KL1 ribosomal protein S6 kinase-like 1 O - 20121230 -9606 83695 RHNO1 HKMT1188 C12orf32|RHINO HGNC:28206|MIM:614085|Ensembl:ENSG00000171792|HPRD:17487|Vega:OTTHUMG00000158557 12 12p13.33 RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 O RAD9, HUS1, RAD1-interacting nuclear orphan protein 1|Rad9, Rad1, Hus1 interacting nuclear orphan|rAD9, RAD1, HUS1-interacting nuclear orphan protein 20121230 -9606 83696 TRAPPC9 T1 IBP|IKBKBBP|MRT13|NIBP|TRS120 HGNC:30832|MIM:611966|Ensembl:ENSG00000167632|HPRD:18136|Vega:OTTHUMG00000164187 8 8q24.3 trafficking protein particle complex 9 protein-coding TRAPPC9 trafficking protein particle complex 9 O IKK2 binding protein|NIK and IKK-beta binding protein|NIK- and IKBKB-binding protein|TRAPP 120 kDa subunit|trafficking protein particle complex subunit 9|tularik gene 1 protein 20121230 -9606 83697 SLC4A9 - AE4 HGNC:11035|MIM:610207|Ensembl:ENSG00000113073|HPRD:15393|Vega:OTTHUMG00000163352 5 5q31 solute carrier family 4, sodium bicarbonate cotransporter, member 9 protein-coding SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9 O anion exchange protein 4|anion exchanger 4|sodium bicarbonate cotransporter 5|solute carrier family 4, sodium bicarbonate cotransporter-like, member 9 20121230 -9606 83698 CALN1 - CABP8 HGNC:13248|MIM:607176|Ensembl:ENSG00000183166|HPRD:06209|Vega:OTTHUMG00000023787 7 7q11 calneuron 1 protein-coding CALN1 calneuron 1 O calcium-binding protein 8|calcium-binding protein CABP8|calneuron I|calneuron-1 20121230 -9606 83699 SH3BGRL2 - - HGNC:15567|Ensembl:ENSG00000198478|HPRD:15331|Vega:OTTHUMG00000015081 6 6q14.1 SH3 domain binding glutamic acid-rich protein like 2 protein-coding SH3BGRL2 SH3 domain binding glutamic acid-rich protein like 2 O SH3 domain-binding glutamic acid-rich-like protein 2|fovea-associated SH3 domain-binding protein 20121230 -9606 83700 JAM3 UNQ859/PRO1868 JAM-2|JAM-3|JAM-C|JAMC HGNC:15532|MIM:606871|Ensembl:ENSG00000166086|HPRD:06042|Vega:OTTHUMG00000167130 11 11q25 junctional adhesion molecule 3 protein-coding JAM3 junctional adhesion molecule 3 O junctional adhesion molecule C 20121230 -9606 83706 FERMT3 - KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF HGNC:23151|MIM:607901|Ensembl:ENSG00000149781|HPRD:07440|Vega:OTTHUMG00000167790 11 11q13.1 fermitin family member 3 protein-coding FERMT3 fermitin family member 3 O MIG2-like protein|UNC-112 related protein 2|fermitin family homolog 3|kindlin 3|unc-112-related protein 2 20121230 -9606 83707 TRPT1 - - HGNC:20316|MIM:610470|Ensembl:ENSG00000149743|HPRD:17479|Vega:OTTHUMG00000167844 11 11q13.1 tRNA phosphotransferase 1 protein-coding TRPT1 tRNA phosphotransferase 1 O tRNA 2'-phosphotransferase 1|tRNA splicing 2' phosphotransferase 1 20121230 -9606 83714 NRIP2 - - HGNC:23078|Ensembl:ENSG00000053702|HPRD:14839|Vega:OTTHUMG00000130616 12 12p13.33 nuclear receptor interacting protein 2 protein-coding NRIP2 nuclear receptor interacting protein 2 O nuclear receptor-interacting protein 2 20121230 -9606 83715 ESPN LP2654 DFNB36 HGNC:13281|MIM:606351|Ensembl:ENSG00000187017|HPRD:06962|Vega:OTTHUMG00000000753 1 1p36.31 espin protein-coding ESPN espin O autosomal recessive deafness type 36 protein|ectoplasmic specialization protein 20121230 -9606 83716 CRISPLD2 UNQ2914/PRO1156/PRO9783 CRISP11|LCRISP2 HGNC:25248|MIM:612434|Ensembl:ENSG00000103196|HPRD:13186|Vega:OTTHUMG00000137644 16 16q24.1 cysteine-rich secretory protein LCCL domain containing 2 protein-coding CRISPLD2 cysteine-rich secretory protein LCCL domain containing 2 O CRISP-11|LCCL domain containing cysteine-rich secretory protein 2|LCCL domain-containing cysteine-rich secretory protein 2|cysteine-rich secretory protein 11|cysteine-rich secretory protein LCCL domain-containing 2 20121230 -9606 83719 YPEL3 FKSG5 - HGNC:18327|MIM:609724|Ensembl:ENSG00000090238|HPRD:15683|Vega:OTTHUMG00000176853 16 16p11.2 yippee-like 3 (Drosophila) protein-coding YPEL3 yippee-like 3 (Drosophila) O protein yippee-like 3 20121230 -9606 83723 FAM57B FP1188 - HGNC:25295|Ensembl:ENSG00000149926|HPRD:13156|Vega:OTTHUMG00000132105 16 16p11.2 family with sequence similarity 57, member B protein-coding FAM57B family with sequence similarity 57, member B O protein FAM57B 20121230 -9606 83729 INHBE - - HGNC:24029|MIM:612031|Ensembl:ENSG00000139269|HPRD:11047|Vega:OTTHUMG00000169995 12 12q13.3 inhibin, beta E protein-coding INHBE inhibin, beta E O activin beta E|activin beta-E chain|inhibin beta E chain 20121230 -9606 83732 RIOK1 RP11-288G3.1 AD034|RRP10|bA288G3.1 HGNC:18656|Ensembl:ENSG00000124784|HPRD:17978|Vega:OTTHUMG00000014207 6 6p24.3 RIO kinase 1 protein-coding RIOK1 RIO kinase 1 O serine/threonine-protein kinase RIO1 20121230 -9606 83733 SLC25A18 - GC2 HGNC:10988|MIM:609303|Ensembl:ENSG00000182902|HPRD:15355|Vega:OTTHUMG00000150089 22 22q11.2 solute carrier family 25 (glutamate carrier), member 18 protein-coding SLC25A18 solute carrier family 25 (glutamate carrier), member 18 O GC-2|glutamate/H(+) symporter 2|mitochondrial glutamate carrier 2|solute carrier family 25 (mitochondrial carrier), member 18|solute carrier family 25 member 18 20121230 -9606 83734 ATG10 PP12616 APG10|APG10L|pp12616 HGNC:20315|MIM:610800|Ensembl:ENSG00000152348|HPRD:16497|Vega:OTTHUMG00000119041 5 5q14.1 autophagy related 10 protein-coding ATG10 autophagy related 10 O ATG10 autophagy related 10 homolog|autophagy-related protein 10|ubiquitin-like-conjugating enzyme ATG10 20121230 -9606 83737 ITCH - AIF4|AIP4|NAPP1|dJ468O1.1 HGNC:13890|MIM:606409|Ensembl:ENSG00000078747|Vega:OTTHUMG00000032300 20 20q11.22 itchy E3 ubiquitin protein ligase protein-coding ITCH itchy E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase Itchy homolog|NFE2-associated polypeptide 1|atrophin-1 interacting protein 4|dJ468O1.1 (atrophin 1 interacting protein 4 (AIP4))|itchy E3 ubiquitin protein ligase homolog 20121230 -9606 83740 H2AFB3 - H2ABBD|H2AFB HGNC:14455|MIM:300445|Ensembl:ENSG00000185978|Vega:OTTHUMG00000022670 X Xq28 H2A histone family, member B3 protein-coding H2AFB3 H2A histone family, member B3 O H2A Barr body-deficient|H2A.Bbd|histone H2A-Bbd type 2/3|histone variant H2A, Barr-body deficient 20121230 -9606 83741 TFAP2D - TFAP2BL1 HGNC:15581|MIM:610161|Ensembl:ENSG00000008197|HPRD:11627|Vega:OTTHUMG00000014832 6 6p12.1 transcription factor AP-2 delta (activating enhancer binding protein 2 delta) protein-coding TFAP2D transcription factor AP-2 delta (activating enhancer binding protein 2 delta) O AP-2 like|AP2-delta|activating enhancer binding protein 2 beta-like 1|activating enhancer-binding protein 2-delta|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)-like 1|transcription factor AP-2 beta (activating enhancer-binding protein 2 beta)-like 1|transcription factor AP-2-beta-like 1|transcription factor AP-2-delta 20121230 -9606 83742 MARVELD1 - GB14|MARVD1|MRVLDC1|RP11-548K23.8|bA548K23.8 HGNC:28674|Ensembl:ENSG00000155254|HPRD:14364|Vega:OTTHUMG00000018865 10 10q24.2 MARVEL domain containing 1 protein-coding MARVELD1 MARVEL domain containing 1 O MARVEL (membrane-associating) domain containing 1|MARVEL domain-containing protein 1|putative MARVEL domain-containing protein 1 20121230 -9606 83743 GRWD1 - CDW4|GRWD|RRB1|WDR28 HGNC:21270|MIM:610597|Ensembl:ENSG00000105447|HPRD:11013 19 19q13.33 glutamate-rich WD repeat containing 1 protein-coding GRWD1 glutamate-rich WD repeat containing 1 O CUL4- and DDB1-associated WDR protein 4|WD repeat domain 28|glutamate rich WD repeat protein GRWD|glutamate-rich WD repeat-containing protein 1|regulator of ribosome biogenesis 1 homolog 20121230 -9606 83744 ZNF484 RP11-526D8.9 BA526D8.4 HGNC:23385|Ensembl:ENSG00000127081|HPRD:18346|Vega:OTTHUMG00000020236 9 9q22.31 zinc finger protein 484 protein-coding ZNF484 zinc finger protein 484 O KRAB box containing C2H2 type zinc finger bA526D8.4 20121230 -9606 83746 L3MBTL2 RP4-756G23.4 H-l(3)mbt-l|L3MBT HGNC:18594|MIM:611865|Ensembl:ENSG00000100395|HPRD:13954|Vega:OTTHUMG00000150942 22 22q13.31-q13.33 l(3)mbt-like 2 (Drosophila) protein-coding L3MBTL2 l(3)mbt-like 2 (Drosophila) O H-l(3)mbt-like protein 2|L(3)mbt-like protein 2|lethal(3)malignant brain tumor-like protein 2 20121230 -9606 83747 C20orf57 RP11-243J16.11-009 bA243J16.5 HGNC:16190 20 20q11.21 chromosome 20 open reading frame 57 unknown C20orf57 chromosome 20 open reading frame 57 O - 20121216 -9606 83752 LONP2 - LONP|LONPL HGNC:20598|Ensembl:ENSG00000102910|HPRD:07491|Vega:OTTHUMG00000133144 16 16q12.1 lon peptidase 2, peroxisomal protein-coding LONP2 lon peptidase 2, peroxisomal O lon protease 2|lon protease homolog 2, peroxisomal|lon protease-like protein 2|peroxisomal LON protease like|peroxisomal Lon protease homolog 2 20121230 -9606 83755 KRTAP4-12 - KAP4.12|KRTAP4.12 HGNC:16776|Ensembl:ENSG00000213416|HPRD:13941|Vega:OTTHUMG00000133632 17 17q12-q21 keratin associated protein 4-12 protein-coding KRTAP4-12 keratin associated protein 4-12 O keratin-associated protein 4-12|keratin-associated protein 4.12|ultrahigh sulfur keratin-associated protein 4.12 20121230 -9606 83756 TAS1R3 - T1R3 HGNC:15661|MIM:605865|Ensembl:ENSG00000169962|Vega:OTTHUMG00000003071 1 1p36.33 taste receptor, type 1, member 3 protein-coding TAS1R3 taste receptor, type 1, member 3 O sweet taste receptor T1R3|taste receptor type 1 member 3 20121230 -9606 83757 CYP2G2P - CYP2G2|CYP2GP2 HGNC:15653 19 19q13.2 cytochrome P450, family 2, subfamily G, polypeptide 2 pseudogene pseudo CYP2G2P cytochrome P450, family 2, subfamily G, polypeptide 2 pseudogene O - 20121230 -9606 83758 RBP5 - CRBP-III|CRBP3|CRBPIII HGNC:15847|MIM:611866|Ensembl:ENSG00000139194|HPRD:17961|Vega:OTTHUMG00000168165 12 12p13.31 retinol binding protein 5, cellular protein-coding RBP5 retinol binding protein 5, cellular O HRBPiso|cellular retinol-binding protein III|putative cellular retinol-binding protein CRBP III|retinol-binding protein 5|retinol-binding protein 5, cellular 20121230 -9606 83759 RBM4B - RBM30|RBM4L|ZCCHC15|ZCRB3B HGNC:28842|Ensembl:ENSG00000173914|HPRD:15230|Vega:OTTHUMG00000167243 11 11q13 RNA binding motif protein 4B protein-coding RBM4B RNA binding motif protein 4B O RNA binding motif protein 30|RNA-binding motif protein 30|RNA-binding motif protein 4B|RNA-binding protein 30|RNA-binding protein 4B|zinc finger CCHC-type and RNA binding motif 3B 20121230 -9606 83786 FRMD8 FKSG44 - HGNC:25462|Ensembl:ENSG00000126391|HPRD:13326|Vega:OTTHUMG00000166275 11 11q13 FERM domain containing 8 protein-coding FRMD8 FERM domain containing 8 O FERM domain-containing protein 8|FKSG44 20121230 -9606 83787 ARMC10 PSEC0198 PNAS-112|PNAS112|SVH HGNC:21706|MIM:611864|Ensembl:ENSG00000170632|HPRD:18133|Vega:OTTHUMG00000157201 7 7q22.1 armadillo repeat containing 10 protein-coding ARMC10 armadillo repeat containing 10 O armadillo repeat-containing protein 10|specific splicing variant involved in hepatocarcinogenesis|splicing variant involved in hepatocarcinogenesis protein 20121230 -9606 83795 KCNK16 - K2p16.1|TALK-1|TALK1 HGNC:14464|MIM:607369|Ensembl:ENSG00000095981|HPRD:09565|Vega:OTTHUMG00000014645 6 6p21.2-p21.1 potassium channel, subfamily K, member 16 protein-coding KCNK16 potassium channel, subfamily K, member 16 O 2P domain potassium channel Talk-1|TWIK-related alkaline pH-activated K(+) channel 1|pancreatic potassium channel Talk-1|potassium channel subfamily K member 16 20121230 -9606 83844 USP26 RP1-97K10.1 - HGNC:13485|MIM:300309|Ensembl:ENSG00000134588|HPRD:02255|Vega:OTTHUMG00000022429 X Xq26.2 ubiquitin specific peptidase 26 protein-coding USP26 ubiquitin specific peptidase 26 O deubiquitinating enzyme 26|ubiquitin carboxyl-terminal hydrolase 26|ubiquitin specific protease 26|ubiquitin thioesterase 26|ubiquitin thiolesterase 26|ubiquitin-specific processing protease 26|ubiquitin-specific-processing protease 26 20121230 -9606 83849 SYT15 RP11-38L15.7 CHR10SYT|sytXV HGNC:17167|MIM:608081|Ensembl:ENSG00000204176|HPRD:12161|Vega:OTTHUMG00000018103 10 10q11.1 synaptotagmin XV protein-coding SYT15 synaptotagmin XV O chr10 synaptotagmin|synaptotagmin XV-a|synaptotagmin-15 20121230 -9606 83850 ESYT3 - CHR3SYT|E-Syt3|FAM62C HGNC:24295|Ensembl:ENSG00000158220|HPRD:13054|Vega:OTTHUMG00000147354 3 3q22.3 extended synaptotagmin-like protein 3 protein-coding ESYT3 extended synaptotagmin-like protein 3 O chr3 synaptotagmin|extended synaptotagmin-3|family with sequence similarity 62 (C2 domain containing), member C 20121230 -9606 83851 SYT16 - CHR14SYT|SYT14L|Strep14|syt14r|yt14r HGNC:23142|MIM:610950|Ensembl:ENSG00000139973|HPRD:15461|Vega:OTTHUMG00000171106 14 14q23.2 synaptotagmin XVI protein-coding SYT16 synaptotagmin XVI O chr14 synaptotagmin|synaptotagmin 14-like protein|synaptotagmin XIV-related protein|synaptotagmin-16 20121230 -9606 83852 SETDB2 - C13orf4|CLLD8|CLLL8|KMT1F HGNC:20263|MIM:607865|Ensembl:ENSG00000136169|HPRD:09712|Vega:OTTHUMG00000016918 13 13q14 SET domain, bifurcated 2 protein-coding SETDB2 SET domain, bifurcated 2 O chronic lymphocytic leukemia deletion region 8|chronic lymphocytic leukemia deletion region gene 8 protein|histone-lysine N-methyltransferase SETDB2|lysine N-methyltransferase 1F 20121230 -9606 83853 ROPN1L - ASP|RSPH11 HGNC:24060|MIM:611756|Ensembl:ENSG00000145491|HPRD:17986|Vega:OTTHUMG00000090507 5 5p15.2 rhophilin associated tail protein 1-like protein-coding ROPN1L rhophilin associated tail protein 1-like O AKAP-associated sperm protein|ROPN1-like protein|radial spoke head 11 homolog|ropporin 1-like|ropporin-1-like protein 20121230 -9606 83854 ANGPTL6 UNQ152/PRO178 AGF|ARP5 HGNC:23140|MIM:609336|Ensembl:ENSG00000130812|HPRD:12453|Vega:OTTHUMG00000180395 19 19p13.2 angiopoietin-like 6 protein-coding ANGPTL6 angiopoietin-like 6 O angiopoietin-like protein 6|angiopoietin-related growth factor|angiopoietin-related protein 5|angiopoietin-related protein 6 20121230 -9606 83855 KLF16 - BTEB4|DRRF|NSLP2 HGNC:16857|MIM:606139|Ensembl:ENSG00000129911|HPRD:12090|Vega:OTTHUMG00000179994 19 19p13.3 Kruppel-like factor 16 protein-coding KLF16 Kruppel-like factor 16 O BTE-binding protein 4|Krueppel-like factor 16|basic transcription element binding protein 4|basic transcription element-binding protein 4|dopamine receptor regulating factor|novel Sp1-like zinc finger transcription factor 2|transcription factor BTEB4|transcription factor NSLP2 20121230 -9606 83856 FSD1L RP11-235C23.3 CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 HGNC:13753|MIM:609829|Ensembl:ENSG00000106701|HPRD:14641|HPRD:16688|Vega:OTTHUMG00000020426 9 9q31 fibronectin type III and SPRY domain containing 1-like protein-coding FSD1L fibronectin type III and SPRY domain containing 1-like O FSD1 C-terminal like|FSD1 N-terminal like|FSD1 N-terminal-like protein|FSD1-like protein|coiled-coil domain containing 10|coiled-coil domain-containing protein 10|cystatin and DUF19 domain containing 1 20121230 -9606 83857 TMTC1 ARG99 OLF|TMTC1A HGNC:24099|Ensembl:ENSG00000133687|HPRD:12472|Vega:OTTHUMG00000169324 12 12p11.22 transmembrane and tetratricopeptide repeat containing 1 protein-coding TMTC1 transmembrane and tetratricopeptide repeat containing 1 O transmembrane and TPR repeat-containing protein 1|transmembrane and tetratricopeptide repeat containing 1A 20121230 -9606 83858 ATAD3B RP4-628J24.3 AAA-TOB3|TOB3 HGNC:24007|MIM:612317|Ensembl:ENSG00000160072|HPRD:10679|Vega:OTTHUMG00000000577 1 1p36.33 ATPase family, AAA domain containing 3B protein-coding ATAD3B ATPase family, AAA domain containing 3B O AAA-ATPase TOB3|ATPase family AAA domain-containing protein 3B 20121230 -9606 83860 TAF3 RP11-379F12.5 TAF140|TAFII-140|TAFII140 HGNC:17303|MIM:606576|Ensembl:ENSG00000165632|Vega:OTTHUMG00000017643 10 10p15.1 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa protein-coding TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa O 140 kDa TATA box-binding protein-associated factor|RNA polymerase II transcription factor TAFII140|TAF(II)140|TBP-associated factor 3|transcription initiation factor TFIID 140 kDa subunit|transcription initiation factor TFIID subunit 3 20121230 -9606 83861 RSPH3 - RSHL2|RSP3|dJ111C20.1 HGNC:21054|Ensembl:ENSG00000130363|HPRD:15279|Vega:OTTHUMG00000015924 6 6q25.3 radial spoke 3 homolog (Chlamydomonas) protein-coding RSPH3 radial spoke 3 homolog (Chlamydomonas) O radial spoke head 3 homolog|radial spoke head protein 3 homolog|radial spoke head-like protein 2|radial spoke protein 3|radial spokehead-like 2 20121230 -9606 83862 TMEM120A - NET29|TMPIT HGNC:21697|HPRD:15543 7 7q11.23 transmembrane protein 120A protein-coding TMEM120A transmembrane protein 120A O transmembrane protein induced by tumor necrosis factor alpha 20121230 -9606 83863 TTTY5 - LINC00126|NCRNA00126|TTY5 HGNC:16482|MIM:400038|HPRD:15587 Y Yq11.223 testis-specific transcript, Y-linked 5 (non-protein coding) miscRNA TTTY5 testis-specific transcript, Y-linked 5 (non-protein coding) O - 20121230 -9606 83864 TTTY9A - NCRNA00131|TTTY9|TTY9 HGNC:18490 Y Yq11.222 testis-specific transcript, Y-linked 9A (non-protein coding) miscRNA TTTY9A testis-specific transcript, Y-linked 9A (non-protein coding) O - 20121230 -9606 83866 TTTY11 - NCRNA00134|TTY11 HGNC:18492 Y Yp11.2 testis-specific transcript, Y-linked 11 (non-protein coding) miscRNA TTTY11 testis-specific transcript, Y-linked 11 (non-protein coding) O - 20121230 -9606 83867 TTTY12 - NCRNA00135|TTY11|TTY12 HGNC:18493 Y Yp11.2 testis-specific transcript, Y-linked 12 (non-protein coding) miscRNA TTTY12 testis-specific transcript, Y-linked 12 (non-protein coding) O - 20121230 -9606 83868 TTTY13 - NCRNA00136|TTY13 HGNC:18494 Y Yq11.223 testis-specific transcript, Y-linked 13 (non-protein coding) miscRNA TTTY13 testis-specific transcript, Y-linked 13 (non-protein coding) O - 20121230 -9606 83869 TTTY14 - CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14 HGNC:18495 Y Yq11.222 testis-specific transcript, Y-linked 14 (non-protein coding) miscRNA TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding) O - 20121230 -9606 83871 RAB34 - RAB39|RAH HGNC:16519|MIM:610917|Ensembl:ENSG00000109113|HPRD:06701|Vega:OTTHUMG00000132680 17 17q11.2 RAB34, member RAS oncogene family protein-coding RAB34 RAB34, member RAS oncogene family O ras-related protein Rab-34|ras-related protein Rab-39|ras-related protein Rah 20121230 -9606 83872 HMCN1 GS1-174L6.1 ARMD1|FBLN6|FIBL-6|FIBL6 HGNC:19194|MIM:608548|Ensembl:ENSG00000143341|HPRD:06509|Vega:OTTHUMG00000059337 1 1q25.3-q31.1 hemicentin 1 protein-coding HMCN1 hemicentin 1 O fibulin-6|hemicentin-1 20121230 -9606 83873 GPR61 - BALGR|GPCR3 HGNC:13300|MIM:606916|Ensembl:ENSG00000156097|HPRD:06077|Vega:OTTHUMG00000011633 1 1p13.3 G protein-coupled receptor 61 protein-coding GPR61 G protein-coupled receptor 61 O biogenic amine receptor-like G-protein coupled receptor|biogenic amine receptor-like GPCR|probable G-protein coupled receptor 61 20121230 -9606 83874 TBC1D10A - EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 HGNC:23609|MIM:610020|Ensembl:ENSG00000099992|HPRD:18162|Vega:OTTHUMG00000150924 22 22q12.2 TBC1 domain family, member 10A protein-coding TBC1D10A TBC1 domain family, member 10A O EBP50-PDX interactor of 64 kDa|EBP50-PDZ interactor of 64 kD|TBC1 domain family member 10A|rab27A-GAP-alpha 20121230 -9606 83875 BCO2 - B-DIOX-II|BCDO2 HGNC:18503|MIM:611740|Ensembl:ENSG00000197580|HPRD:12522|Vega:OTTHUMG00000167155 11 11q22.3-q23.1 beta-carotene oxygenase 2 protein-coding BCO2 beta-carotene oxygenase 2 O b,b-carotene-9',10'-dioxygenase|beta,beta-carotene 9',10'-dioxygenase variant 1|beta,beta-carotene 9',10'-oxygenase|beta-carotene 9',10' oxygenase|beta-carotene dioxygenase 2 20121230 -9606 83876 MRO - B29|C18orf3 HGNC:24121|MIM:608080|Ensembl:ENSG00000134042|HPRD:16276|Vega:OTTHUMG00000132692 18 18q21 maestro protein-coding MRO maestro O beside the Ma29 deletion|male-specific transcription in the developing reproductive organs|protein maestro 20121230 -9606 83877 TM2D2 - BLP1 HGNC:24127|MIM:610081|Ensembl:ENSG00000169490|HPRD:16553|Vega:OTTHUMG00000164098 8 8p11.22 TM2 domain containing 2 protein-coding TM2D2 TM2 domain containing 2 O BBP-like protein 1|TM2 domain-containing protein 2|beta-amyloid-binding protein-like protein 1 20121230 -9606 83878 USHBP1 - AIEBP|MCC2 HGNC:24058|MIM:611810|Ensembl:ENSG00000130307|HPRD:18276 19 19p13 Usher syndrome 1C binding protein 1 protein-coding USHBP1 Usher syndrome 1C binding protein 1 O AIE-75 binding protein protein|AIE-75-binding protein|MCC-2|USH1C-binding protein 1|Usher syndrome type-1C protein-binding protein 1|mutated in colon cancer protein 2 20121230 -9606 83879 CDCA7 - JPO1 HGNC:14628|MIM:609937|Ensembl:ENSG00000144354|HPRD:09874|Vega:OTTHUMG00000132296 2 2q31 cell division cycle associated 7 protein-coding CDCA7 cell division cycle associated 7 O c-Myc target JPO1|cell division cycle associated protein 7|cell division cycle-associated protein 7 20121230 -9606 83880 EIF3FP2 - IFP38 HGNC:28863|HPRD:17134 13 13p13 eukaryotic translation initiation factor 3, subunit F pseudogene 2 pseudo EIF3FP2 eukaryotic translation initiation factor 3, subunit F pseudogene 2 O - 20121230 -9606 83881 MIXL1 - MILD1|MIX|MIXL HGNC:13363|MIM:609852|Ensembl:ENSG00000185155|HPRD:10086|Vega:OTTHUMG00000037558 1 1q42.12 Mix paired-like homeobox protein-coding MIXL1 Mix paired-like homeobox O MIX1 homeobox-like protein 1|Mix-like homeobox protein 1|hMix|homeobox protein MIXL1|homeodomain protein MIX|mix.1 homeobox-like protein 20121230 -9606 83882 TSPAN10 - OCSP HGNC:29942|Ensembl:ENSG00000182612|HPRD:17655|Vega:OTTHUMG00000178037 17 17q25.3 tetraspanin 10 protein-coding TSPAN10 tetraspanin 10 O oculospanin|tetraspanin-10|tspan-10 20121230 -9606 83884 SLC25A2 - ORC2|ORNT2 HGNC:22921|MIM:608157|Ensembl:ENSG00000120329|HPRD:12180|Vega:OTTHUMG00000129604 5 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 protein-coding SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 O mitochondrial ornithine transporter 2|ornithine transporter 2|solute carrier family 25 member 2 20121230 -9606 83886 PRSS27 UNQ1884/PRO4327 CAPH2|MPN HGNC:15475|MIM:608018|Ensembl:ENSG00000172382|HPRD:07451|Vega:OTTHUMG00000128929 16 16p13.3 protease, serine 27 protein-coding PRSS27 protease, serine 27 O channel-activating protease 2|marapsin|pancreasin|serine protease 27 20121230 -9606 83887 TTLL2 - C6orf104|NYD-TSPG|dJ366N23.3 HGNC:21211|Ensembl:ENSG00000120440|HPRD:18240|Vega:OTTHUMG00000016023 6 6q27 tubulin tyrosine ligase-like family, member 2 protein-coding TTLL2 tubulin tyrosine ligase-like family, member 2 O probable tubulin polyglutamylase TTLL2|testis-specific protein NYD-TSPG|tubulin--tyrosine ligase-like protein 2 20121230 -9606 83888 FGFBP2 UNQ425/PRO1065 HBP17RP|KSP37 HGNC:29451|MIM:607713|Ensembl:ENSG00000137441|HPRD:07413|Vega:OTTHUMG00000128513 4 4p16 fibroblast growth factor binding protein 2 protein-coding FGFBP2 fibroblast growth factor binding protein 2 O 37 kDa killer-specific secretory protein|FGF-BP2|FGF-binding protein 2|FGFBP-2|HBp17-RP|HBp17-related protein|fibroblast growth factor-binding protein 2|killer-specific secretory protein of 37 kDa 20121230 -9606 83889 WDR87 - NYD-SP11 HGNC:29934|Ensembl:ENSG00000171804|Vega:OTTHUMG00000048187 19 19q13.13 WD repeat domain 87 protein-coding WDR87 WD repeat domain 87 O WD repeat-containing protein 87|testis development protein NYD-SP11 20121230 -9606 83890 SPATA9 - NYD-SP16 HGNC:22988|MIM:608039|Ensembl:ENSG00000145757|HPRD:12155|Vega:OTTHUMG00000121169 5 5q15 spermatogenesis associated 9 protein-coding SPATA9 spermatogenesis associated 9 O spermatogenesis-associated protein 9|testis development protein NYD-SP16 20121230 -9606 83891 SNX25 MSTP043 SBBI31 HGNC:21883|Ensembl:ENSG00000109762|HPRD:15414|Vega:OTTHUMG00000160475 4 4q35.1 sorting nexin 25 protein-coding SNX25 sorting nexin 25 O sorting nexin-25 20121230 -9606 83892 KCTD10 MSTP028 ULRO61|hBACURD3 HGNC:23236|MIM:613421|Ensembl:ENSG00000110906|HPRD:13762|Vega:OTTHUMG00000169253 12 12q24.11 potassium channel tetramerisation domain containing 10 protein-coding KCTD10 potassium channel tetramerisation domain containing 10 O BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3|BTB/POZ domain-containing protein KCTD10|potassium channel tetramerization domain-containing protein 10 20121230 -9606 83893 SPATA16 - NYD-SP12|SPGF6 HGNC:29935|MIM:609856|Ensembl:ENSG00000144962|HPRD:11408|Vega:OTTHUMG00000156865 3 3q26.31 spermatogenesis associated 16 protein-coding SPATA16 spermatogenesis associated 16 O spermatogenesis-associated protein 16|testis development protein NYD-SP12|testis-specific Golgi protein 20121230 -9606 83894 TTC29 - NYD-SP14|TBPP2A HGNC:29936|Ensembl:ENSG00000137473|HPRD:14866|Vega:OTTHUMG00000162047 4 4q31.22 tetratricopeptide repeat domain 29 protein-coding TTC29 tetratricopeptide repeat domain 29 O TPR repeat protein 29|testis development protein NYD-SP14|tetratricopeptide repeat protein 29 20121230 -9606 83895 KRTAP1-5 - KAP1.5|KRTAP1.5 HGNC:16777|MIM:608822|Ensembl:ENSG00000221852|HPRD:12306|Vega:OTTHUMG00000133587 17 17q12-q21 keratin associated protein 1-5 protein-coding KRTAP1-5 keratin associated protein 1-5 O high sulfur keratin-associated protein 1.5|keratin associated protein 1.5|keratin-associated protein 1-5|keratin-associated protein 1.5 20121230 -9606 83896 KRTAP3-1 - KAP3.1|KRTAP3.1 HGNC:16778|Ensembl:ENSG00000212901|HPRD:13937|Vega:OTTHUMG00000133595 17 17q12-q21 keratin associated protein 3-1 protein-coding KRTAP3-1 keratin associated protein 3-1 O high sulfur keratin-associated protein 3.1|keratin-associated protein 3-1|keratin-associated protein 3.1 20121230 -9606 83897 KRTAP3-2 - KAP3.2|KRTAP3.2 HGNC:16779|Ensembl:ENSG00000212900|HPRD:13938|Vega:OTTHUMG00000133581 17 17q12-q21 keratin associated protein 3-2 protein-coding KRTAP3-2 keratin associated protein 3-2 O high sulfur keratin-associated protein 3.2|keratin associated protein 3.2|keratin-associated protein 3-2|keratin-associated protein 3.2 20121230 -9606 83899 KRTAP9-2 - KAP9.2|KRTAP9.2 HGNC:16926|Ensembl:ENSG00000239886|HPRD:13949|Vega:OTTHUMG00000133609 17 17q12-q21 keratin associated protein 9-2 protein-coding KRTAP9-2 keratin associated protein 9-2 O keratin-associated protein 9-2|keratin-associated protein 9.2|ultrahigh sulfur keratin-associated protein 9.2 20121230 -9606 83900 KRTAP9-3 - KAP9.3|KRTAP9.3 HGNC:16927|Ensembl:ENSG00000204873|HPRD:13950|Vega:OTTHUMG00000133427 17 17q12-q21 keratin associated protein 9-3 protein-coding KRTAP9-3 keratin associated protein 9-3 O keratin associated protein 9.3|keratin-associated protein 9-3|keratin-associated protein 9.3|ultrahigh sulfur keratin-associated protein 9.3 20121230 -9606 83901 KRTAP9-8 - KAP9.8|KRTAP9.8 HGNC:17231|Ensembl:ENSG00000187272|Vega:OTTHUMG00000133604 17 17q12-q21 keratin associated protein 9-8 protein-coding KRTAP9-8 keratin associated protein 9-8 O keratin associated protein 9.8|keratin-associated protein 9-8|keratin-associated protein 9.8|ultrahigh sulfur keratin-associated protein 9.8 20121230 -9606 83902 KRTAP17-1 - KAP17.1|KRTAP16.1|KRTAP17.1 HGNC:18917|Ensembl:ENSG00000186860|HPRD:13935|Vega:OTTHUMG00000133433 17 17q12-q21 keratin associated protein 17-1 protein-coding KRTAP17-1 keratin associated protein 17-1 O keratin associated protein 16.1|keratin-associated protein 16.1|keratin-associated protein 17-1 20121230 -9606 83903 GSG2 - HASPIN HGNC:19682|MIM:609240|Ensembl:ENSG00000177602|HPRD:17083|Vega:OTTHUMG00000090703 17 17p13 germ cell associated 2 (haspin) protein-coding GSG2 germ cell associated 2 (haspin) O H-haspin|germ cell-specific gene 2 protein|haploid germ cell-specific nuclear protein kinase|serine/threonine-protein kinase haspin 20121230 -9606 83930 STARD3NL UNQ855/PRO1864 MENTHO HGNC:19169|MIM:611759|Ensembl:ENSG00000010270|HPRD:18117|Vega:OTTHUMG00000023659 7 7p14-p13 STARD3 N-terminal like protein-coding STARD3NL STARD3 N-terminal like O MLN64 N-terminal domain homolog|STARD3 N-terminal-like protein 20121230 -9606 83931 STK40 - RP11-268J15.4|SHIK|SgK495 HGNC:21373|MIM:609437|Ensembl:ENSG00000196182|HPRD:11359|Vega:OTTHUMG00000008238 1 1p34.3 serine/threonine kinase 40 protein-coding STK40 serine/threonine kinase 40 O 2310004N11Rik|SINK-homologous serine/threonine-protein kinase|Ser/Thr-like kinase|serine/threonine-protein kinase 40|sugen kinase 495 20121230 -9606 83932 SPRTN RP5-876B10.3 C1orf124|DDDL1880|DVC1|PRO4323|Spartan|dJ876B10.3 HGNC:25356|Ensembl:ENSG00000010072|HPRD:13164|Vega:OTTHUMG00000038022 1 1q42.12-q43 SprT-like N-terminal domain protein-coding SPRTN SprT-like N-terminal domain O DNA damage-targeting VCP (p97) adaptor|SprT-like domain at the N terminus|protein with SprT-like domain at the N terminus|sprT-like domain-containing protein Spartan|zinc finger RAD18 domain-containing protein C1orf124 20121230 -9606 83933 HDAC10 RP3-402G11.7 HD10 HGNC:18128|MIM:608544|Ensembl:ENSG00000100429|HPRD:09407|Vega:OTTHUMG00000044647 22 22q13.31 histone deacetylase 10 protein-coding HDAC10 histone deacetylase 10 O - 20121230 -9606 83935 TMEM133 AD031 - HGNC:24033|Ensembl:ENSG00000170647|HPRD:12425|Vega:OTTHUMG00000167577 11 11q22.1 transmembrane protein 133 protein-coding TMEM133 transmembrane protein 133 O - 20121230 -9606 83937 RASSF4 RP11-285G1.4 AD037 HGNC:20793|MIM:610559|Ensembl:ENSG00000107551|HPRD:15219|Vega:OTTHUMG00000018060 10 10q11.21 Ras association (RalGDS/AF-6) domain family member 4 protein-coding RASSF4 Ras association (RalGDS/AF-6) domain family member 4 O Ras association (RalGDS/AF-6) domain family 4|Ras association domain family 4|ras association domain-containing protein 4|tumor suppressor RASSF4 20121230 -9606 83938 C10orf11 CDA017 - HGNC:23405|MIM:614537|Ensembl:ENSG00000148655|HPRD:12560|Vega:OTTHUMG00000018532 10 10q22.3 chromosome 10 open reading frame 11 protein-coding C10orf11 chromosome 10 open reading frame 11 O leucine-rich repeat-containing protein C10orf11 20121230 -9606 83939 EIF2A CDA02 EIF-2A|MST089|MSTP004|MSTP089 HGNC:3254|MIM:609234|Ensembl:ENSG00000144895|HPRD:11739|Vega:OTTHUMG00000159775 3 3q25.1 eukaryotic translation initiation factor 2A, 65kDa protein-coding EIF2A eukaryotic translation initiation factor 2A, 65kDa O 65 kDa eukaryotic translation initiation factor 2A|eukaryotic translation initiation factor 2A 20121230 -9606 83940 TATDN1 CDA11 - HGNC:24220|Ensembl:ENSG00000147687|HPRD:11621|Vega:OTTHUMG00000165068 8 8q24.13 TatD DNase domain containing 1 protein-coding TATDN1 TatD DNase domain containing 1 O hepatocarcinoma high expression protein|putative deoxyribonuclease TATDN1 20121230 -9606 83941 TM2D1 - BBP HGNC:24142|MIM:610080|Ensembl:ENSG00000162604|HPRD:16540|Vega:OTTHUMG00000008466 1 1p31.3 TM2 domain containing 1 protein-coding TM2D1 TM2 domain containing 1 O TM2 domain-containing protein 1|beta-amyloid-binding protein|hBBP 20121230 -9606 83942 TSSK1B FKSG81 SPOGA4|STK22D|TSK1|TSSK1 HGNC:14968|MIM:610709|Ensembl:ENSG00000212122|HPRD:11610|Vega:OTTHUMG00000128835 5 5q22.2 testis-specific serine kinase 1B protein-coding TSSK1B testis-specific serine kinase 1B O TSK-1|TSSK-1|serine/threonine kinase 22D (spermiogenesis associated)|serine/threonine kinase FKSG81|serine/threonine-protein kinase 22A|spermiogenesis associated 4|testis-specific kinase 1|testis-specific serine kinase 1|testis-specific serine/threonine-protein kinase 1 20121230 -9606 83943 IMMP2L - IMP2|IMP2-LIKE HGNC:14598|MIM:605977|Ensembl:ENSG00000184903|HPRD:07297|Vega:OTTHUMG00000155023 7 7q31 IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) protein-coding IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) O inner mitochondrial membrane peptidase 2 like|mitochondrial inner membrane protease subunit 2 20121230 -9606 83953 FCAMR FKSG87 CD351|FCA/MR HGNC:24692|MIM:605484|Ensembl:ENSG00000162897|HPRD:12020|Vega:OTTHUMG00000036579 1 1q32.1 Fc receptor, IgA, IgM, high affinity protein-coding FCAMR Fc receptor, IgA, IgM, high affinity O Fc alpha/mu receptor|high affinity immunoglobulin alpha and immunoglobulin mu Fc receptor|immunity related factor|receptor for Fc fragment of IgA and IgM 20121230 -9606 83955 NACAP1 FKSG17 - HGNC:24688 8 8q22.3 nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 pseudo NACAP1 nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 O - 20121230 -9606 83956 RACGAP1P - FKSG42 HGNC:24689|HPRD:13325 12 12q12 Rac GTPase activating protein 1 pseudogene pseudo RACGAP1P Rac GTPase activating protein 1 pseudogene O - 20121230 -9606 83957 FRMD8P1 - - HGNC:24690|HPRD:06511 X Xq12 FERM domain containing 8 pseudogene 1 pseudo FRMD8P1 FERM domain containing 8 pseudogene 1 O - 20121230 -9606 83959 SLC4A11 RP4-794I6.3 BTR1|CDPD1|CHED2|NABC1|dJ794I6.2 HGNC:16438|MIM:610206|Ensembl:ENSG00000088836|HPRD:15392|Vega:OTTHUMG00000031740 20 20p12 solute carrier family 4, sodium borate transporter, member 11 protein-coding SLC4A11 solute carrier family 4, sodium borate transporter, member 11 O bicarbonate transporter related protein 1|sodium bicarbonate transporter-like protein 11|sodium-coupled borate cotransporter 1|solute carrier family 4, sodium bicarbonate transporter-like, member 11 20121230 -9606 83982 IFI27L2 - FAM14A|ISG12B|TLH29 HGNC:19753|MIM:611319|Ensembl:ENSG00000119632|HPRD:13291|Vega:OTTHUMG00000171313 14 14q32.12 interferon, alpha-inducible protein 27-like 2 protein-coding IFI27L2 interferon, alpha-inducible protein 27-like 2 O ISG12(b) protein|family with sequence similarity 14, member A|interferon alpha-inducible protein 27-like protein 2|interferon-stimulated gene 12b protein|pIFI27-like protein 20121230 -9606 83983 TSSK6 FKSG82 CT72|SSTK|TSSK4 HGNC:30410|MIM:610712|Ensembl:ENSG00000178093|HPRD:15441|Vega:OTTHUMG00000182146 19 19p13.11 testis-specific serine kinase 6 protein-coding TSSK6 testis-specific serine kinase 6 O TSK-6|cancer/testis antigen 72|serine/threonine protein kinase SSTK|small serine/threonine kinase|testis-specific serine/threonine-protein kinase 6 20121230 -9606 83985 SPNS1 PP20300 HSpin1|LAT|PP2030|SPIN1|SPINL|nrs HGNC:30621|MIM:612583|Ensembl:ENSG00000169682|HPRD:11599|Vega:OTTHUMG00000131762 16 16p11.2 spinster homolog 1 (Drosophila) protein-coding SPNS1 spinster homolog 1 (Drosophila) O protein spinster homolog 1|spinster-like protein 1 20121230 -9606 83986 ITFG3 - C16orf9|gs19 HGNC:14163|Ensembl:ENSG00000167930|HPRD:12677|Vega:OTTHUMG00000060728 16 16p13.3 integrin alpha FG-GAP repeat containing 3 protein-coding ITFG3 integrin alpha FG-GAP repeat containing 3 O protein ITFG3 20121230 -9606 83987 CCDC8 - 3M3|PPP1R20|p90 HGNC:25367|MIM:614145|Ensembl:ENSG00000169515|HPRD:13009|Vega:OTTHUMG00000162348 19 19q13.32 coiled-coil domain containing 8 protein-coding CCDC8 coiled-coil domain containing 8 O coiled-coil domain-containing protein 8|protein phosphatase 1, regulatory subunit 20 20121230 -9606 83988 NCALD - - HGNC:7655|MIM:606722|Ensembl:ENSG00000104490|HPRD:09466|Vega:OTTHUMG00000164876 8 8q22.2 neurocalcin delta protein-coding NCALD neurocalcin delta O neurocalcin-delta 20121230 -9606 83989 FAM172A - C5orf21 HGNC:25365|Ensembl:ENSG00000113391|HPRD:13210|Vega:OTTHUMG00000131329 5 5q15 family with sequence similarity 172, member A protein-coding FAM172A family with sequence similarity 172, member A O protein FAM172A 20121230 -9606 83990 BRIP1 - BACH1|FANCJ|OF HGNC:20473|MIM:605882|Ensembl:ENSG00000136492|HPRD:05797|Vega:OTTHUMG00000179233 17 17q22.2 BRCA1 interacting protein C-terminal helicase 1 protein-coding BRIP1 BRCA1 interacting protein C-terminal helicase 1 O ATP-dependent RNA helicase BRIP1|BRCA1-associated C-terminal helicase 1|BRCA1-binding helicase-like protein BACH1|BRCA1/BRCA2-associated helicase 1|Fanconi anemia group J protein 20121230 -9606 83992 CTTNBP2 - C7orf8|CORTBP2|Orf4 HGNC:15679|MIM:609772|Ensembl:ENSG00000077063|HPRD:09890|Vega:OTTHUMG00000022880 7 7q31 cortactin binding protein 2 protein-coding CTTNBP2 cortactin binding protein 2 O cortactin-binding protein 2 20121230 -9606 83998 REG4 RP5-1042I8.1 GISP|REG-IV|RELP HGNC:22977|MIM:609846|Ensembl:ENSG00000134193|HPRD:17964|Vega:OTTHUMG00000012175 1 1p13.1-p12 regenerating islet-derived family, member 4 protein-coding REG4 regenerating islet-derived family, member 4 O REG-4|REG-like protein|gastrointestinal secretory protein|reg IV|regenerating gene type IV|regenerating islet-derived protein 4|regenerating islet-derived protein IV 20121230 -9606 83999 KREMEN1 CTA-57G9.2 KREMEN|KRM1 HGNC:17550|MIM:609898|Ensembl:ENSG00000183762|HPRD:11182|Vega:OTTHUMG00000030987 22 22q12.1 kringle containing transmembrane protein 1 protein-coding KREMEN1 kringle containing transmembrane protein 1 O dickkopf receptor|kremen protein 1|kringle domain-containing transmembrane protein 1|kringle-coding gene marking the eye and the nose|kringle-containing protein marking the eye and the nose 20121230 -9606 84000 TMPRSS13 - MSP|MSPL|MSPS|TMPRSS11 HGNC:29808|MIM:610050|Ensembl:ENSG00000137747|HPRD:07493|Vega:OTTHUMG00000166992 11 11q23 transmembrane protease, serine 13 protein-coding TMPRSS13 transmembrane protease, serine 13 O membrane-type mosaic serine protease|transmembrane protease serine 13|transmembrane protease, serine 11 20121230 -9606 84002 B3GNT5 - B3GN-T5|beta3Gn-T5 HGNC:15684|Ensembl:ENSG00000176597|HPRD:12511|Vega:OTTHUMG00000158436 3 3q28 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 O BGnT-5|UDP-GlcNAc:beta-Gal beta-1,3-N-acetylglucosaminyltransferase 5|beta 1,3 N-acetyglucosaminyltransferase Lc3 synthase|beta-1,3-Gn-T5|beta-1,3-N-acetylglucosaminyltransferase 5|beta-1,3-N-acetylglucosaminyltransferase bGnT-5|lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase|lactotriaosylceramide synthase|lc(3)Cer synthase|lc3 synthase 20121230 -9606 84033 OBSCN RP5-1139B12.1 ARHGEF30|UNC89 HGNC:15719|MIM:608616|Ensembl:ENSG00000154358|HPRD:08594|HPRD:10551|Vega:OTTHUMG00000039772 1 1q42.13 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF protein-coding OBSCN obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF O obscurin|obscurin, myosin light chain kinase|obscurin-MLCK 20121230 -9606 84034 EMILIN2 - EMILIN-2|FOAP-10 HGNC:19881|MIM:608928|Ensembl:ENSG00000132205|HPRD:09937|Vega:OTTHUMG00000128525 18 18p11.3 elastin microfibril interfacer 2 protein-coding EMILIN2 elastin microfibril interfacer 2 O EMILIN-2|elastin microfibril interface-located protein 2|extracellular glycoprotein EMILIN-2 20121230 -9606 84054 PCDHB19P - PCDH-PSI5|PCDHB19 HGNC:14549 5 5q31 protocadherin beta 19 pseudogene pseudo PCDHB19P protocadherin beta 19 pseudogene O - 20121230 -9606 84055 PCDHGB9P - PSI6 HGNC:15688 5 5q31 protocadherin gamma subfamily B, 9 pseudogene pseudo PCDHGB9P protocadherin gamma subfamily B, 9 pseudogene O - 20121230 -9606 84056 KATNAL1 RP11-374F3.1 - HGNC:28361|MIM:614764|Ensembl:ENSG00000102781|HPRD:13753|Vega:OTTHUMG00000016665 13 13q12.3 katanin p60 subunit A-like 1 protein-coding KATNAL1 katanin p60 subunit A-like 1 O katanin p60 ATPase-containing subunit A-like 1|p60 katanin-like 1 20121230 -9606 84057 MND1 - GAJ HGNC:24839|MIM:611422|Ensembl:ENSG00000121211|HPRD:17025|Vega:OTTHUMG00000161523 4 4q31.3 meiotic nuclear divisions 1 homolog (S. cerevisiae) protein-coding MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae) O homolog of yeast MND1|meiotic nuclear division protein 1 homolog 20121230 -9606 84058 WDR54 - - HGNC:25770|Ensembl:ENSG00000005448|HPRD:08577|Vega:OTTHUMG00000129951 2 2p13.1 WD repeat domain 54 protein-coding WDR54 WD repeat domain 54 O WD repeat-containing protein 54 20121230 -9606 84059 GPR98 - FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b HGNC:17416|MIM:602851|Ensembl:ENSG00000164199|HPRD:09111|Vega:OTTHUMG00000162668 5 5q13 G protein-coupled receptor 98 protein-coding GPR98 G protein-coupled receptor 98 O G-protein coupled receptor 98|monogenic audiogenic seizure susceptibility protein 1 homolog|monogenic, audiogenic seizure susceptibility 1 homolog|usher syndrome type-2C protein|very large G protein-coupled receptor 1|very large G-protein coupled receptor 1 20121230 -9606 84060 RBM48 - C7orf64|DKFZP564O0523|HSPC304 HGNC:21785|Ensembl:ENSG00000127993|HPRD:13173|Vega:OTTHUMG00000159535 7 7q21.2 RNA binding motif protein 48 protein-coding RBM48 RNA binding motif protein 48 O RNA-binding protein 48|UPF0712 protein C7orf64 20121230 -9606 84061 MAGT1 RP11-217H1.1 IAP|MRX95|OST3B|PRO0756|XMEN|bA217H1.1 HGNC:28880|MIM:300715|Ensembl:ENSG00000102158|HPRD:06487|Vega:OTTHUMG00000021882 X Xq21.1 magnesium transporter 1 protein-coding MAGT1 magnesium transporter 1 O implantation-associated protein|magnesium transporter protein 1|oligosaccharyltransferase 3 homolog B 20121230 -9606 84062 DTNBP1 RP1-147M19.1 BLOC1S8|DBND|HPS7|My031|SDY HGNC:17328|MIM:607145|Ensembl:ENSG00000047579|HPRD:06190|Vega:OTTHUMG00000014295 6 6p22.3 dystrobrevin binding protein 1 protein-coding DTNBP1 dystrobrevin binding protein 1 O Hermansky-Pudlak syndrome 7 protein|biogenesis of lysosomal organelles complex-1, subunit 8|dysbindin|dysbindin-1 20121230 -9606 84063 KIRREL2 UNQ5827/PRO19646 FILTRIN|NEPH3|NLG1 HGNC:18816|MIM:607762|Ensembl:ENSG00000126259|HPRD:08473|Vega:OTTHUMG00000180691 19 19q13.12 kin of IRRE like 2 (Drosophila) protein-coding KIRREL2 kin of IRRE like 2 (Drosophila) O kin of IRRE-like protein 2|kin of irregular chiasm-like 2|kin of irregular chiasm-like protein 2|nephrin-like 3|nephrin-like gene 1|nephrin-like protein 3 20121230 -9606 84064 HDHD2 - 3110052N05Rik HGNC:25364|Ensembl:ENSG00000167220|HPRD:13640|Vega:OTTHUMG00000179411 18 18q21.1 haloacid dehalogenase-like hydrolase domain containing 2 protein-coding HDHD2 haloacid dehalogenase-like hydrolase domain containing 2 O haloacid dehalogenase-like hydrolase domain-containing protein 2 20121230 -9606 84065 TMEM222 RP11-4K3__A.4 C1orf160 HGNC:25363|Ensembl:ENSG00000186501|HPRD:13167|Vega:OTTHUMG00000004410 1 1p36.11 transmembrane protein 222 protein-coding TMEM222 transmembrane protein 222 O - 20121230 -9606 84066 TEX35 RP5-990P15.1 C1orf49|TSC24 HGNC:25366|Ensembl:ENSG00000240021|HPRD:13169|Vega:OTTHUMG00000035023 1 1q25.2 testis expressed 35 protein-coding TEX35 testis expressed 35 O Testis-Specific Conserved gene 24kDa|testis-expressed sequence 35 protein 20121230 -9606 84067 FAM160A2 - C11orf56 HGNC:25378|Ensembl:ENSG00000051009|HPRD:08002|Vega:OTTHUMG00000133379 11 11p15.4 family with sequence similarity 160, member A2 protein-coding FAM160A2 family with sequence similarity 160, member A2 O FHIP|FTS and Hook-interacting protein 20121230 -9606 84068 SLC10A7 PSEC0051 C4orf13|P7 HGNC:23088|MIM:611459|Ensembl:ENSG00000120519|HPRD:13177|Vega:OTTHUMG00000161437 4 4q31.22 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 protein-coding SLC10A7 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 O Na(+)/bile acid cotransporter 7|SBF-domain containing protein|sodium/bile acid cotransporter 7|solute carrier family 10 member 7 20121230 -9606 84069 PLEKHN1 - RP11-54O7.7 HGNC:25284|Ensembl:ENSG00000187583|HPRD:13190|Vega:OTTHUMG00000040756 1 1p36.33 pleckstrin homology domain containing, family N member 1 protein-coding PLEKHN1 pleckstrin homology domain containing, family N member 1 O PH domain-containing family N member 1|pleckstrin homology domain-containing family N member 1 20121230 -9606 84070 FAM186B - C12orf25 HGNC:25296|Ensembl:ENSG00000135436|HPRD:08535|Vega:OTTHUMG00000167427 12 12q13.12 family with sequence similarity 186, member B protein-coding FAM186B family with sequence similarity 186, member B O protein FAM186B 20121230 -9606 84071 ARMC2 RP11-787I22.1 bA787I22.1 HGNC:23045|Ensembl:ENSG00000118690|HPRD:09809|Vega:OTTHUMG00000015335 6 6q21 armadillo repeat containing 2 protein-coding ARMC2 armadillo repeat containing 2 O armadillo repeat-containing protein 2 20121230 -9606 84072 HORMAD1 - CT46|NOHMA HGNC:25245|MIM:609824|Ensembl:ENSG00000143452|HPRD:11396|Vega:OTTHUMG00000035005 1 1q21.3 HORMA domain containing 1 protein-coding HORMAD1 HORMA domain containing 1 O HORMA domain-containing protein 1|cancer/testis antigen 46|newborn ovary HORMA protein 20121230 -9606 84073 MYCBPAP - AMAP-1|AMAP1 HGNC:19677|MIM:609835|Ensembl:ENSG00000136449|HPRD:11378|Vega:OTTHUMG00000157184 17 17q21.33 MYCBP associated protein protein-coding MYCBPAP MYCBP associated protein O AMAM-1|AMY-1-binding protein 1|AMY1-associating protein 1|MYCBP-associated protein 20121230 -9606 84074 QRICH2 - - HGNC:25326|Ensembl:ENSG00000129646|HPRD:10891|Vega:OTTHUMG00000167578 17 17q25.1 glutamine rich 2 protein-coding QRICH2 glutamine rich 2 O glutamine-rich protein 2 20121230 -9606 84075 FSCB - C14orf155 HGNC:20494|MIM:611779|Ensembl:ENSG00000189139|HPRD:12638|Vega:OTTHUMG00000140262 14 14q21.2 fibrous sheath CABYR binding protein protein-coding FSCB fibrous sheath CABYR binding protein O fibrous sheath CABYR-binding protein 20121230 -9606 84076 TKTL2 - - HGNC:25313|Ensembl:ENSG00000151005|HPRD:13159|Vega:OTTHUMG00000161527 4 4q32.2 transketolase-like 2 protein-coding TKTL2 transketolase-like 2 O transketolase-like protein 2 20121230 -9606 84077 C3orf20 - - HGNC:25320|Ensembl:ENSG00000131379|HPRD:12821|Vega:OTTHUMG00000155545 3 3p25.1 chromosome 3 open reading frame 20 protein-coding C3orf20 chromosome 3 open reading frame 20 O uncharacterized protein C3orf20 20121230 -9606 84078 KBTBD7 - - HGNC:25266|Ensembl:ENSG00000120696|HPRD:13759|Vega:OTTHUMG00000016789 13 13q14.11 kelch repeat and BTB (POZ) domain containing 7 protein-coding KBTBD7 kelch repeat and BTB (POZ) domain containing 7 O kelch repeat and BTB domain-containing protein 7 20121230 -9606 84079 ANKRD27 PP12899 VARP HGNC:25310|Ensembl:ENSG00000105186|HPRD:10650|Vega:OTTHUMG00000180225 19 19q13.11 ankyrin repeat domain 27 (VPS9 domain) protein-coding ANKRD27 ankyrin repeat domain 27 (VPS9 domain) O VPS9 domain-containing protein|VPS9-ankyrin-repeat protein|Vps9 domain and ankyrin-repeat-containing protein|ankyrin repeat domain-containing protein 27 20121230 -9606 84080 ENKD1 UNQ6410 C16orf48|DAKV6410 HGNC:25246|Ensembl:ENSG00000124074|HPRD:13151|Vega:OTTHUMG00000137550 16 16q22.1 enkurin domain containing 1 protein-coding ENKD1 enkurin domain containing 1 O uncharacterized protein C16orf48 20121230 -9606 84081 NSRP1 - CCDC55|HSPC095|NSrp70 HGNC:25305|Ensembl:ENSG00000126653|HPRD:08536|Vega:OTTHUMG00000132754 17 17q11.2 nuclear speckle splicing regulatory protein 1 protein-coding NSRP1 nuclear speckle splicing regulatory protein 1 O coiled-coil domain containing 55|coiled-coil domain-containing protein 55|nuclear speckle-related protein 70 20121230 -9606 84083 ZRANB3 - 4933425L19Rik|AH2 HGNC:25249|Ensembl:ENSG00000121988|HPRD:15896|Vega:OTTHUMG00000150475 2 2q21.3 zinc finger, RAN-binding domain containing 3 protein-coding ZRANB3 zinc finger, RAN-binding domain containing 3 O DNA annealing helicase and endonuclease ZRANB3|annealing helicase 2|zinc finger Ran-binding domain-containing protein 3 20121230 -9606 84084 RAB6C - WTH3 HGNC:16525|MIM:612909|Ensembl:ENSG00000222014|HPRD:15201|Vega:OTTHUMG00000153487 2 2q21.1 RAB6C, member RAS oncogene family protein-coding RAB6C RAB6C, member RAS oncogene family O rab6-like protein WTH3|ras-related protein Rab-6C 20121230 -9606 84085 FBXO30 RP11-545I5.4 Fbx30 HGNC:15600|MIM:609101|Ensembl:ENSG00000118496|HPRD:10953|Vega:OTTHUMG00000015749 6 6q24 F-box protein 30 protein-coding FBXO30 F-box protein 30 O F-box domain protein|F-box only protein 30|F-box only protein, helicase, 18 20121230 -9606 84086 IGLCOR22-2 RP1-149A16.15-001 IGLC/OR22-2 HGNC:15697|IMGT/GENE-DB:IGLC/OR22-2 22 22q12.2-q12.3 immunoglobulin lambda constant/OR22-2 (pseudogene) pseudo IGLCOR22-2 immunoglobulin lambda constant/OR22-2 (pseudogene) O - 20111109 -9606 84087 IGLVIVOR22-2 - - HGNC:15695|IMGT/GENE-DB:IGLV(IV)/OR22-2 22 22q12.2-q12.3 immunoglobulin lambda variable (IV)/OR22-2 (pseudogene) pseudo IGLVIVOR22-2 immunoglobulin lambda variable (IV)/OR22-2 (pseudogene) O - 20111109 -9606 84088 IGLVIVOR22-1 - - HGNC:15694|IMGT/GENE-DB:IGLV(IV)/OR22-1 22 22q11.2-q12.1 immunoglobulin lambda variable (IV)/OR22-1 (pseudogene) pseudo IGLVIVOR22-1 immunoglobulin lambda variable (IV)/OR22-1 (pseudogene) O - 20111109 -9606 84089 IGLVVII-41-1 - lambdavg1 HGNC:15691|IMGT/GENE-DB:IGLV(VII)-41-1 22 22q11.2 immunoglobulin lambda variable (VII)-41-1 (pseudogene) pseudo IGLVVII-41-1 immunoglobulin lambda variable (VII)-41-1 (pseudogene) O - 20121230 -9606 84090 IGLVVI-25-1 - lambdavg3 HGNC:15690|IMGT/GENE-DB:IGLV(VI)-25-1 22 22q11.2 immunoglobulin lambda variable (VI)-25-1 (pseudogene) pseudo IGLVVI-25-1 immunoglobulin lambda variable (VI)-25-1 (pseudogene) O - 20121230 -9606 84091 IGLVVI-22-1 - Lvg2 HGNC:15689|IMGT/GENE-DB:IGLV(VI)-22-1 22 22q11.2 immunoglobulin lambda variable (VI)-22-1 (pseudogene) other IGLVVI-22-1 immunoglobulin lambda variable (VI)-22-1 (pseudogene) O - 20121230 -9606 84096 IGLCOR22-1 - IGLC/OR22-1 HGNC:15696|IMGT/GENE-DB:IGLC/OR22-1 22 22q12.2-q12.3 immunoglobulin lambda constant/OR22-1 (pseudogene) other IGLCOR22-1 immunoglobulin lambda constant/OR22-1 (pseudogene) O - 20121021 -9606 84097 IGLVIV-66-1 - - HGNC:15692|IMGT/GENE-DB:IGLV(IV)-66-1 22 22q11.2 immunoglobulin lambda variable (IV)-66-1 (pseudogene) pseudo IGLVIV-66-1 immunoglobulin lambda variable (IV)-66-1 (pseudogene) O - 20121230 -9606 84099 ID2B - - HGNC:30656 3 3p14.2 inhibitor of DNA binding 2B, dominant negative helix-loop-helix protein (pseudogene) pseudo ID2B inhibitor of DNA binding 2B, dominant negative helix-loop-helix protein (pseudogene) O - 20121230 -9606 84100 ARL6 - BBS3|RP55 HGNC:13210|MIM:608845|Ensembl:ENSG00000113966|HPRD:10588|Vega:OTTHUMG00000159189 3 3q11.2 ADP-ribosylation factor-like 6 protein-coding ARL6 ADP-ribosylation factor-like 6 O ADP-ribosylation factor-like protein 6|bardet-Biedl syndrome 3 protein 20121230 -9606 84101 USP44 - - HGNC:20064|MIM:610993|Ensembl:ENSG00000136014|HPRD:15636|Vega:OTTHUMG00000170281 12 12q22 ubiquitin specific peptidase 44 protein-coding USP44 ubiquitin specific peptidase 44 O deubiquitinating enzyme 44|ubiquitin carboxyl-terminal hydrolase 44|ubiquitin specific protease 44|ubiquitin thioesterase 44|ubiquitin thiolesterase 44|ubiquitin-specific-processing protease 44 20121230 -9606 84102 SLC41A2 - SLC41A1-L1 HGNC:31045|MIM:610802|Ensembl:ENSG00000136052|HPRD:15389|Vega:OTTHUMG00000156965 12 12q23.3 solute carrier family 41, member 2 protein-coding SLC41A2 solute carrier family 41, member 2 O SLC41A1-like 1|solute carrier family 41 member 2 20121230 -9606 84103 C4orf17 - - HGNC:25274|Ensembl:ENSG00000138813|HPRD:12825|Vega:OTTHUMG00000131027 4 4q23 chromosome 4 open reading frame 17 protein-coding C4orf17 chromosome 4 open reading frame 17 O uncharacterized protein C4orf17 20121230 -9606 84105 PCBD2 - DCOH2|DCOHM|PHS2 HGNC:24474|MIM:609836|Ensembl:ENSG00000132570|HPRD:17824|Vega:OTTHUMG00000163070 5 5q31.1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 protein-coding PCBD2 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 O 4-alpha-hydroxy-tetrahydropterin dehydratase 2|6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2|DcoH-like protein DCoHm|HNF-1-alpha dimerization cofactor|PHS 2|dimerization cofactor of hepatocyte nuclear factor 1 (HNF1) from muscle|dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1)|dimerization cofactor of hepatocyte nuclear factor 1 from muscle|pterin-4 alpha-carbinolamine dehydratase 2|pterin-4-alpha-carbinolamine dehydratase 2 20121230 -9606 84106 PRAM1 - PML-RAR|PRAM-1 HGNC:30091|MIM:606466|Ensembl:ENSG00000133246|HPRD:05926 19 19p13.2 PML-RARA regulated adaptor molecule 1 protein-coding PRAM1 PML-RARA regulated adaptor molecule 1 O PML-RARA target gene encoding an Adaptor Molecule-1|PML-RARA-regulated adapter molecule 1|PRAM 20121230 -9606 84107 ZIC4 - - HGNC:20393|MIM:608948|Ensembl:ENSG00000174963|HPRD:12340|Vega:OTTHUMG00000037281 3 3q24 Zic family member 4 protein-coding ZIC4 Zic family member 4 O zinc family member 4 protein HZIC4|zinc finger protein ZIC 4|zinc finger protein of the cerebellum 4 20121230 -9606 84108 PCGF6 - MBLR|RNF134 HGNC:21156|MIM:607816|Ensembl:ENSG00000156374|HPRD:07427|Vega:OTTHUMG00000018982 10 10q24.33 polycomb group ring finger 6 protein-coding PCGF6 polycomb group ring finger 6 O Mel18 and Bmi1-like RING finger protein|polycomb group RING finger protein 6|ring finger protein 134 20121230 -9606 84109 QRFPR - AQ27|GPR103|SP9155 HGNC:15565|MIM:606925|Ensembl:ENSG00000186867|HPRD:09494|Vega:OTTHUMG00000133036 4 4q27 pyroglutamylated RFamide peptide receptor protein-coding QRFPR pyroglutamylated RFamide peptide receptor O G protein-coupled receptor 103|G-protein coupled receptor 103|QRFP receptor|orexigenic neuropeptide QRFP receptor 20121230 -9606 84124 ZNF394 - ZKSCAN14 HGNC:18832|Ensembl:ENSG00000160908|HPRD:18333|Vega:OTTHUMG00000154660 7 7q22.1 zinc finger protein 394 protein-coding ZNF394 zinc finger protein 394 O zinc finger protein 99|zinc finger protein with KRAB and SCAN domains 14 20121230 -9606 84125 LRRIQ1 - - HGNC:25708|Ensembl:ENSG00000133640|HPRD:09952|Vega:OTTHUMG00000166185 12 12q21.31 leucine-rich repeats and IQ motif containing 1 protein-coding LRRIQ1 leucine-rich repeats and IQ motif containing 1 O leucine-rich repeat and IQ domain-containing protein 1 20121230 -9606 84126 ATRIP hCG_1997849 - HGNC:33499|MIM:606605|Ensembl:ENSG00000164053|Vega:OTTHUMG00000133532 3 3p21.31 ATR interacting protein protein-coding ATRIP ATR interacting protein O ATM and Rad3-related-interacting protein|ATR-interacting protein 20121230 -9606 84128 WDR75 - NET16|UTP17 HGNC:25725|Ensembl:ENSG00000115368|HPRD:07775|Vega:OTTHUMG00000132660 2 2q32.2 WD repeat domain 75 protein-coding WDR75 WD repeat domain 75 O UTP17, small subunit (SSU) processome component, homolog|WD repeat-containing protein 75 20121230 -9606 84129 ACAD11 - ACAD-11 HGNC:30211|MIM:614288|Ensembl:ENSG00000240303|HPRD:13352|Vega:OTTHUMG00000159780 3 3q22.1 acyl-CoA dehydrogenase family, member 11 protein-coding ACAD11 acyl-CoA dehydrogenase family, member 11 O 62113 protein|acyl-CoA dehydrogenase family member 11|acyl-Coenzyme A dehydrogenase family, member 11 20121230 -9606 84131 CEP78 RP11-336N8.5 C9orf81|IP63 HGNC:25740|Ensembl:ENSG00000148019|Vega:OTTHUMG00000020062 9 9q21.2 centrosomal protein 78kDa protein-coding CEP78 centrosomal protein 78kDa O centrosomal protein of 78 kDa 20121230 -9606 84132 USP42 tcag7.880 - HGNC:20068|Ensembl:ENSG00000106346|Vega:OTTHUMG00000151888 7 7p22.1 ubiquitin specific peptidase 42 protein-coding USP42 ubiquitin specific peptidase 42 O deubiquitinating enzyme 42|ubiquitin carboxyl-terminal hydrolase 42|ubiquitin specific protease 42|ubiquitin thioesterase 42|ubiquitin thiolesterase 42|ubiquitin-specific-processing protease 42 20121230 -9606 84133 ZNRF3 hCG_40978 BK747E2.3|RNF203 HGNC:18126|MIM:612062|Ensembl:ENSG00000183579|Vega:OTTHUMG00000151009 22 22q12.1 zinc and ring finger 3 protein-coding ZNRF3 zinc and ring finger 3 O E3 ubiquitin-protein ligase ZNRF3|RING finger protein 203|novel C3HC4 type Zinc finger (ring finger)|zinc/RING finger protein 3 20121230 -9606 84134 TOMM40L - RP11-297K8.10|TOMM40B HGNC:25756|Ensembl:ENSG00000158882|HPRD:13354|Vega:OTTHUMG00000034345 1 1q23.3 translocase of outer mitochondrial membrane 40 homolog (yeast)-like protein-coding TOMM40L translocase of outer mitochondrial membrane 40 homolog (yeast)-like O mitochondrial import receptor subunit TOM40B|protein TOMM40-like|translocase of outer mitochondrial membrane 40 homolog-like 20121230 -9606 84135 UTP15 - NET21 HGNC:25758|Ensembl:ENSG00000164338|HPRD:07796|Vega:OTTHUMG00000162453 5 5q13.2 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) protein-coding UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) O Src-associated protein SAW|U3 small nucleolar RNA-associated protein 15 homolog 20121230 -9606 84138 SLC7A6OS - - HGNC:25807|Ensembl:ENSG00000103061|HPRD:07824|Vega:OTTHUMG00000137558 16 16q22.1 solute carrier family 7, member 6 opposite strand protein-coding SLC7A6OS solute carrier family 7, member 6 opposite strand O ADAMS proteinase-related protein|probable RNA polymerase II nuclear localization protein SLC7A6OS|protein SLC7A6OS|solute carrier family 7 member 6 opposite strand transcript 20121230 -9606 84140 FAM161A - RP28 HGNC:25808|MIM:613596|Ensembl:ENSG00000170264|Vega:OTTHUMG00000152165 2 2p15 family with sequence similarity 161, member A protein-coding FAM161A family with sequence similarity 161, member A O protein FAM161A|retinitis pigmentosa 28 (autosomal recessive) 20121230 -9606 84141 EVA1A SP24 FAM176A|TMEM166 HGNC:25816|Ensembl:ENSG00000115363|HPRD:07827|Vega:OTTHUMG00000129991 2 2p12 eva-1 homolog A (C. elegans) protein-coding EVA1A eva-1 homolog A (C. elegans) O family with sequence similarity 176, member A|protein FAM176A|transmembrane protein 166 20121230 -9606 84142 FAM175A UNQ496/PRO1013 ABRA1|CCDC98 HGNC:25829|MIM:611143|Ensembl:ENSG00000163322|HPRD:08584|Vega:OTTHUMG00000130429 4 4q21.23 family with sequence similarity 175, member A protein-coding FAM175A family with sequence similarity 175, member A O BRCA1-A complex subunit Abraxas|abraxas protein|coiled-coil domain containing 98|coiled-coil domain-containing protein 98 20121230 -9606 84144 SYDE2 - RP11-33E12.1 HGNC:25841|Ensembl:ENSG00000097096|Vega:OTTHUMG00000009956 1 1p22.3 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) protein-coding SYDE2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) O protein syd-1 homolog 2|rho GTPase-activating protein SYDE2|synapse defective protein 1 homolog 2 20121230 -9606 84146 ZNF644 - BM-005|MYP21|NatF|ZEP-2 HGNC:29222|MIM:614159|Ensembl:ENSG00000122482|HPRD:15885|Vega:OTTHUMG00000010078 1 1p22.2 zinc finger protein 644 protein-coding ZNF644 zinc finger protein 644 O zinc finger motif enhancer binding protein 2 20121230 -9606 84148 KAT8 PP7073 MOF|MYST1|hMOF HGNC:17933|MIM:609912|Ensembl:ENSG00000103510|HPRD:11381|Vega:OTTHUMG00000132410 16 16p11.2 K(lysine) acetyltransferase 8 protein-coding KAT8 K(lysine) acetyltransferase 8 O MOZ, YBF2/SAS3, SAS2 and TIP60 protein 1|MYST histone acetyltransferase 1|MYST-1|histone acetyltransferase KAT8|histone acetyltransferase MYST1|lysine acetyltransferase 8|ortholog of Drosophila males absent on the first (MOF)|probable histone acetyltransferase MYST1 20121230 -9606 84152 PPP1R1B - DARPP-32|DARPP32 HGNC:9287|MIM:604399|Ensembl:ENSG00000131771|HPRD:05097|Vega:OTTHUMG00000133210 17 17q12 protein phosphatase 1, regulatory (inhibitor) subunit 1B protein-coding PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B O dopamine and cAMP-regulated neuronal phosphoprotein 32|protein phosphatase 1 regulatory subunit 1B 20121230 -9606 84153 RNASEH2C - AGS3|AYP1 HGNC:24116|MIM:610330|Ensembl:ENSG00000172922|HPRD:16531|Vega:OTTHUMG00000166601 11 11q13.1 ribonuclease H2, subunit C protein-coding RNASEH2C ribonuclease H2, subunit C O RNase H1 small subunit|RNase H2 subunit C|aicardi-Goutieres syndrome 3 protein|ribonuclease H2 subunit C|ribonuclease HI subunit C 20121230 -9606 84154 RPF2 RP11-397G5.1 BXDC1|bA397G5.4 HGNC:20870|Ensembl:ENSG00000197498|HPRD:12552|Vega:OTTHUMG00000015368 6 6q21 ribosome production factor 2 homolog (S. cerevisiae) protein-coding RPF2 ribosome production factor 2 homolog (S. cerevisiae) O brix domain containing 1|brix domain-containing protein 1|homolog of Rpf2|ribosomal processing factor 2 homolog|ribosome biogenesis protein RPF2 homolog|ribosome production factor 2 homolog 20121230 -9606 84159 ARID5B RP11-341A19.1 DESRT|MRF-2|MRF2 HGNC:17362|MIM:608538|Ensembl:ENSG00000150347|Vega:OTTHUMG00000018298 10 10q21.2 AT rich interactive domain 5B (MRF1-like) protein-coding ARID5B AT rich interactive domain 5B (MRF1-like) O ARID domain-containing protein 5B|AT-rich interactive domain-containing protein 5B|MRF1-like protein|modulator recognition factor 2 (MRF2) 20121230 -9606 84162 KIAA1109 - FSA|Tweek HGNC:26953|MIM:611565|Ensembl:ENSG00000138688|Vega:OTTHUMG00000150116 4 4q27 KIAA1109 protein-coding KIAA1109 KIAA1109 O fragile site-associated protein|uncharacterized protein KIAA1109 20121230 -9606 84163 GTF2IRD2 - FP630|GTF2IRD2A HGNC:30775|MIM:608899|Ensembl:ENSG00000196275|HPRD:16402|Vega:OTTHUMG00000130353 7 7q11.23 GTF2I repeat domain containing 2 protein-coding GTF2IRD2 GTF2I repeat domain containing 2 O GTF2I repeat domain-containing protein 2A|GTF2IRD2 alpha|general transcription factor II i repeat domain 2 alpha|general transcription factor II-I repeat domain-containing protein 2A|transcription factor GTF2IRD2|transcription factor GTF2IRD2-alpha 20121230 -9606 84164 ASCC2 SC22CB-11B7.2 ASC1p100|p100 HGNC:24103|MIM:614216|Ensembl:ENSG00000100325|HPRD:16515|Vega:OTTHUMG00000067658 22 22q12.1 activating signal cointegrator 1 complex subunit 2 protein-coding ASCC2 activating signal cointegrator 1 complex subunit 2 O ASC-1 complex subunit P100|trip4 complex subunit p100 20121230 -9606 84166 NLRC5 - CLR16.1|NOD27|NOD4 HGNC:29933|MIM:613537|Ensembl:ENSG00000140853|HPRD:14831|Vega:OTTHUMG00000133470 16 16q13 NLR family, CARD domain containing 5 protein-coding NLRC5 NLR family, CARD domain containing 5 O NOD-like receptor C5|caterpiller protein 16.1|nucleotide-binding oligomerization domain protein 4|nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 5|nucleotide-binding oligomerization domains 27|protein NLRC5 20121230 -9606 84167 C19orf44 - - HGNC:26141|Ensembl:ENSG00000105072|HPRD:08641 19 19p13.11 chromosome 19 open reading frame 44 protein-coding C19orf44 chromosome 19 open reading frame 44 O uncharacterized protein C19orf44 20121230 -9606 84168 ANTXR1 - ATR|TEM8 HGNC:21014|MIM:606410|Ensembl:ENSG00000169604|HPRD:05913|Vega:OTTHUMG00000129575 2 2p13.1 anthrax toxin receptor 1 protein-coding ANTXR1 anthrax toxin receptor 1 O 2310008J16Rik|2810405N18Rik|tumor endothelial marker 8 20121230 -9606 84171 LOXL4 - LOXC HGNC:17171|MIM:607318|Ensembl:ENSG00000138131|HPRD:09538|Vega:OTTHUMG00000018874 10 10q24 lysyl oxidase-like 4 protein-coding LOXL4 lysyl oxidase-like 4 O lysyl oxidase homolog 4|lysyl oxidase related C|lysyl oxidase-like 4 pseudogene|lysyl oxidase-like protein 4|lysyl oxidase-related protein C 20121230 -9606 84172 POLR1B - RPA135|RPA2|Rpo1-2 HGNC:20454|MIM:602000|Ensembl:ENSG00000125630|HPRD:06852|Vega:OTTHUMG00000131314 2 2q13 polymerase (RNA) I polypeptide B, 128kDa protein-coding POLR1B polymerase (RNA) I polypeptide B, 128kDa O DNA-directed RNA polymerase I 135 kDa polypeptide|DNA-directed RNA polymerase I 135kDa polypeptide|DNA-directed RNA polymerase I subunit RPA2|RNA polymerase I subunit 2 20121230 -9606 84173 ELMOD3 PP4068 LST3|RBED1|RBM29 HGNC:26158|Ensembl:ENSG00000115459|HPRD:07973|Vega:OTTHUMG00000130170 2 2p11.2 ELMO/CED-12 domain containing 3 protein-coding ELMOD3 ELMO/CED-12 domain containing 3 O C330008I15Rik|ELMO domain-containing protein 3|RNA binding motif and ELMO domain 1|RNA binding motif and ELMO/CED-12 domain 1|RNA binding motif protein 29|RNA-binding motif and ELMO domain-containing protein 1|RNA-binding motif protein 29|RNA-binding protein 29|liver-specific organic anion transporter 3TM12|organic anion transporter LST-3b 20121230 -9606 84174 SLA2 - C20orf156|MARS|SLAP-2|SLAP2 HGNC:17329|MIM:606577|Ensembl:ENSG00000101082|HPRD:05955|Vega:OTTHUMG00000032393 20 20q11.23 Src-like-adaptor 2 protein-coding SLA2 Src-like-adaptor 2 O Src-like adapter protein-2|modulator of antigen receptor signaling|src-like-adapter 2 20121230 -9606 84176 MYH16 - MHC20|MYH16P|MYH5 HGNC:31038|MIM:608580 7 7q22.1 myosin, heavy chain 16 pseudogene pseudo MYH16 myosin, heavy chain 16 pseudogene O - 20121230 -9606 84179 MFSD7 LP2561 - HGNC:26177|Ensembl:ENSG00000169026|HPRD:08650|Vega:OTTHUMG00000119001 4 4p16.3 major facilitator superfamily domain containing 7 protein-coding MFSD7 major facilitator superfamily domain containing 7 O MYL5|major facilitator superfamily domain-containing protein 7|myosin light polypeptide 5 regulatory protein 20121230 -9606 84181 CHD6 RP4-620E11.2 CHD5|RIGB HGNC:19057|Ensembl:ENSG00000124177|HPRD:13049|Vega:OTTHUMG00000032487 20 20q12 chromodomain helicase DNA binding protein 6 protein-coding CHD6 chromodomain helicase DNA binding protein 6 O ATP-dependent helicase CHD6|CHD-6|chromodomain-helicase-DNA-binding protein 6|helicase C-terminal domain- and SNF2 N-terminal domain-containing protein|radiation-induced gene B protein 20121230 -9606 84182 FAM188B - C7orf67 HGNC:21916|Ensembl:ENSG00000106125|HPRD:13387|Vega:OTTHUMG00000152800 7 7p14.3 family with sequence similarity 188, member B protein-coding FAM188B family with sequence similarity 188, member B O protein FAM188B 20121230 -9606 84186 ZCCHC7 HSPC086 AIR1|RP11-397D12.1 HGNC:26209|Ensembl:ENSG00000147905|HPRD:15703|Vega:OTTHUMG00000019915 9 9p13.2 zinc finger, CCHC domain containing 7 protein-coding ZCCHC7 zinc finger, CCHC domain containing 7 O zinc finger CCHC domain-containing protein 7 20121230 -9606 84187 TMEM164 RP13-360B22.2 bB360B22.3 HGNC:26217|Ensembl:ENSG00000157600|HPRD:06539|Vega:OTTHUMG00000022192 X Xq22.3 transmembrane protein 164 protein-coding TMEM164 transmembrane protein 164 O - 20121230 -9606 84188 FAR1 UNQ2423/PRO4981 MLSTD2|SDR10E1 HGNC:26222|Ensembl:ENSG00000197601|HPRD:14724|Vega:OTTHUMG00000165743 11 11p15.2 fatty acyl CoA reductase 1 protein-coding FAR1 fatty acyl CoA reductase 1 O fatty acyl-CoA reductase 1|male sterility domain containing 2|male sterility domain-containing protein 2|putative fatty acyl reductase|short chain dehydrogenase/reductase family 10E, member 1 20121230 -9606 84189 SLITRK6 RP11-272M24.2 - HGNC:23503|MIM:609681|Ensembl:ENSG00000184564|HPRD:15403|Vega:OTTHUMG00000017157 13 13q31.1 SLIT and NTRK-like family, member 6 protein-coding SLITRK6 SLIT and NTRK-like family, member 6 O 4832410J21Rik|SLIT and NTRK-like protein 6|slit and trk like gene 6 20121230 -9606 84190 METTL25 - C12orf26 HGNC:26228|Ensembl:ENSG00000127720|HPRD:10979|Vega:OTTHUMG00000170252 12 12q21.31 methyltransferase like 25 protein-coding METTL25 methyltransferase like 25 O methyltransferase-like protein 25 20121230 -9606 84191 FAM96A - - HGNC:26235|Ensembl:ENSG00000166797|HPRD:08010|Vega:OTTHUMG00000132961 15 15q22.31 family with sequence similarity 96, member A protein-coding FAM96A family with sequence similarity 96, member A O MIP18 family protein FAM96A 20121230 -9606 84193 SETD3 - C14orf154 HGNC:20493|Ensembl:ENSG00000183576|HPRD:08664|Vega:OTTHUMG00000028970 14 14q32.2 SET domain containing 3 protein-coding SETD3 SET domain containing 3 O SET domain-containing protein 3|histone-lysine N-methyltransferase setd3 20121230 -9606 84196 USP48 - RAP1GA1|USP31 HGNC:18533|Ensembl:ENSG00000090686|HPRD:15637|Vega:OTTHUMG00000007798 1 1p36.12 ubiquitin specific peptidase 48 protein-coding USP48 ubiquitin specific peptidase 48 O deubiquitinating enzyme 48|ubiquitin carboxyl-terminal hydrolase 48|ubiquitin specific protease 31|ubiquitin specific protease 48|ubiquitin thioesterase 48|ubiquitin thiolesterase 48|ubiquitin-specific-processing protease 48 20121230 -9606 84197 SGK196 - - Ensembl:ENSG00000185900|HPRD:08668|Vega:OTTHUMG00000164100 8 8p11.21 protein kinase-like protein SgK196 protein-coding - - - Sugen kinase 196 20121230 -9606 84200 FLJ23519 - - - 11 11p15.5 uncharacterized protein FLJ23519 unknown - - - - 20111025 -9606 84203 TXNDC2 - SPTRX|SPTRX1 HGNC:16470|Ensembl:ENSG00000168454|HPRD:11654|Vega:OTTHUMG00000131602 18 - thioredoxin domain containing 2 (spermatozoa) protein-coding TXNDC2 thioredoxin domain containing 2 (spermatozoa) O sperm-specific thioredoxin 1|spermatid-specific thioredoxin-1|sptrx-1|thioredoxin domain-containing 2 (spermatozoa)|thioredoxin domain-containing protein 2 20121230 -9606 84206 MEX3B - MEX-3B|RKHD3|RNF195 HGNC:25297|MIM:611008|Ensembl:ENSG00000183496|HPRD:15256|Vega:OTTHUMG00000147356 15 15q25.2 mex-3 homolog B (C. elegans) protein-coding MEX3B mex-3 homolog B (C. elegans) O RING finger protein 195|RNA-binding protein MEX3B|ring finger and KH domain containing 3 20121230 -9606 84210 ANKRD20A1 - ANKRD20A HGNC:23665|Ensembl:ENSG00000196774|HPRD:10649|Vega:OTTHUMG00000034629 9 9q13 ankyrin repeat domain 20 family, member A1 protein-coding ANKRD20A1 ankyrin repeat domain 20 family, member A1 O ankyrin repeat domain 20A|ankyrin repeat domain-containing protein 20A1 20121230 -9606 84214 DKFZP434F142 - - - 7 7q11.21 uncharacterized DKFZp434F142 unknown - - - - 20121230 -9606 84215 ZNF541 - - HGNC:25294|Ensembl:ENSG00000118156|HPRD:10337|Vega:OTTHUMG00000141262 19 19q13.33 zinc finger protein 541 protein-coding ZNF541 zinc finger protein 541 O - 20121230 -9606 84216 TMEM117 - - HGNC:25308|Ensembl:ENSG00000139173|HPRD:13193|Vega:OTTHUMG00000169427 12 12q12 transmembrane protein 117 protein-coding TMEM117 transmembrane protein 117 O - 20121230 -9606 84217 ZMYND12 - - HGNC:21192|Ensembl:ENSG00000066185|HPRD:15740|Vega:OTTHUMG00000007333 1 1p34.2 zinc finger, MYND-type containing 12 protein-coding ZMYND12 zinc finger, MYND-type containing 12 O zinc finger MYND domain-containing protein 12|zinc finger, MYND domain containing 12 20121230 -9606 84218 TBC1D3F - TBC1D3 HGNC:18257|MIM:610809|Ensembl:ENSG00000185128|HPRD:09667|Vega:OTTHUMG00000132741 17 17q12 TBC1 domain family, member 3F protein-coding TBC1D3F TBC1 domain family, member 3F O TBC1 domain family member 3|TBC1 domain family member 3F|prostate cancer gene 17 protein|protein TRE17-alpha 20121230 -9606 84219 WDR24 LA16c-313D11.2 C16orf21|JFP7 HGNC:20852|Ensembl:ENSG00000127580|HPRD:15665|Vega:OTTHUMG00000090421 16 16p13.3 WD repeat domain 24 protein-coding WDR24 WD repeat domain 24 O WD repeat-containing protein 24 20121230 -9606 84220 RGPD5 - BS-63|BS63|RGP5 HGNC:32418|MIM:612708|Ensembl:ENSG00000015568|HPRD:04128|Vega:OTTHUMG00000130985 2 2q13 RANBP2-like and GRIP domain containing 5 protein-coding RGPD5 RANBP2-like and GRIP domain containing 5 O RANBP2-like and GRIP domain-containing protein 5|RANBP2-like and GRIP domain-containing protein 5/6|ran-binding protein 2-like 1|ran-binding protein 2-like 1/2|ranBP2-like 1|ranBP2-like 1/2|ranBP2L1|sperm membrane protein BS-63 20121209 -9606 84221 SPATC1L - C21orf56 HGNC:1298|MIM:612412|Ensembl:ENSG00000160284|HPRD:10753|Vega:OTTHUMG00000090487 21 21q22.3 spermatogenesis and centriole associated 1-like protein-coding SPATC1L spermatogenesis and centriole associated 1-like O uncharacterized protein C21orf56 20121230 -9606 84222 TMEM191A - TMEM191AP HGNC:25317|HPRD:13197 22 22q11.21 transmembrane protein 191A (pseudogene) pseudo TMEM191A transmembrane protein 191A (pseudogene) O - 20121230 -9606 84223 IQCG - - HGNC:25251|MIM:612477|Ensembl:ENSG00000114473|HPRD:13746|Vega:OTTHUMG00000155408 3 3q29 IQ motif containing G protein-coding IQCG IQ motif containing G O IQ domain-containing protein G 20121230 -9606 84224 NBPF3 RP11-293F5.5 AE2 HGNC:25076|MIM:612992|Ensembl:ENSG00000142794|HPRD:10633|Vega:OTTHUMG00000002944 1 1p36.12 neuroblastoma breakpoint family, member 3 protein-coding NBPF3 neuroblastoma breakpoint family, member 3 O neuroblastoma breakpoint family member 3|protein SHIIIa4 20121230 -9606 84225 ZMYND15 - - HGNC:20997|MIM:614312|Ensembl:ENSG00000141497|HPRD:15741|Vega:OTTHUMG00000090760 17 17p13.2 zinc finger, MYND-type containing 15 protein-coding ZMYND15 zinc finger, MYND-type containing 15 O zinc finger MYND domain-containing protein 15|zinc finger, MYND domain containing 15 20121230 -9606 84226 C2orf16 - - HGNC:25275|Ensembl:ENSG00000221843|HPRD:09849|Vega:OTTHUMG00000159099 2 2p23.3 chromosome 2 open reading frame 16 protein-coding C2orf16 chromosome 2 open reading frame 16 O uncharacterized protein C2orf16 20121230 -9606 84229 CCDC135 - C16orf50|FAP50 HGNC:25289|Ensembl:ENSG00000159625|HPRD:10902|Vega:OTTHUMG00000133473 16 16q21 coiled-coil domain containing 135 protein-coding CCDC135 coiled-coil domain containing 135 O coiled-coil domain-containing protein 135|coiled-coil domain-containing protein lobo homolog 20121230 -9606 84230 LRRC8C - AD158|FAD158 HGNC:25075|MIM:612889|Ensembl:ENSG00000171488|HPRD:13284|Vega:OTTHUMG00000010305 1 1p22.2 leucine rich repeat containing 8 family, member C protein-coding LRRC8C leucine rich repeat containing 8 family, member C O factor for adipocyte differentiation 158|hypothetical protein AD158|leucine rich repeat containing 8C|leucine-rich repeat-containing protein 8C 20121230 -9606 84231 TRAF7 - RFWD1|RNF119 HGNC:20456|MIM:606692|Ensembl:ENSG00000131653|HPRD:06977|Vega:OTTHUMG00000128826 16 16p13.3 TNF receptor-associated factor 7, E3 ubiquitin protein ligase protein-coding TRAF7 TNF receptor-associated factor 7, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase TRAF7|RING finger and WD repeat-containing protein 1|RING finger protein 119|ring finger and WD repeat domain 1 20121230 -9606 84232 MAF1 - - HGNC:24966|MIM:610210|Ensembl:ENSG00000179632|HPRD:14345|Vega:OTTHUMG00000165244 8 8q24.3 MAF1 homolog (S. cerevisiae) protein-coding MAF1 MAF1 homolog (S. cerevisiae) O homolog of yeast MAF1|repressor of RNA polymerase III transcription MAF1 homolog 20121230 -9606 84233 TMEM126A - OPA7 HGNC:25382|MIM:612988|Ensembl:ENSG00000171202|HPRD:13216|Vega:OTTHUMG00000166975 11 11q14.1 transmembrane protein 126A protein-coding TMEM126A transmembrane protein 126A O - 20121230 -9606 84236 RHBDD1 HSD50 RRP4 HGNC:23081|Ensembl:ENSG00000144468|HPRD:13206|Vega:OTTHUMG00000133178 2 2q36.3 rhomboid domain containing 1 protein-coding RHBDD1 rhomboid domain containing 1 O rhomboid domain-containing protein 1|rhomboid-like protein 4|rhomboid-related protein 4 20121230 -9606 84237 DKFZp547J222 - - - 4 4p15.33 uncharacterized LOC84237 unknown - - - - 20120508 -9606 84239 ATP13A4 UNQ3052/PRO9871 - HGNC:25422|MIM:609556|Ensembl:ENSG00000127249|HPRD:12502|Vega:OTTHUMG00000074067 3 3q29 ATPase type 13A4 protein-coding ATP13A4 ATPase type 13A4 O P5-ATPase|cation-transporting P5-ATPase|probable cation-transporting ATPase 13A4 20121230 -9606 84240 ZCCHC9 - PPP1R41 HGNC:25424|Ensembl:ENSG00000131732|HPRD:15704|Vega:OTTHUMG00000119014 5 5q14.1 zinc finger, CCHC domain containing 9 protein-coding ZCCHC9 zinc finger, CCHC domain containing 9 O protein phosphatase 1, regulatory subunit 41|zinc finger CCHC domain-containing protein 9 20121230 -9606 84243 ZDHHC18 RP1-50O24.3 DHHC-18|DHHC18 HGNC:20712|Ensembl:ENSG00000204160|HPRD:15713|Vega:OTTHUMG00000004092 1 1p36.11 zinc finger, DHHC-type containing 18 protein-coding ZDHHC18 zinc finger, DHHC-type containing 18 O palmitoyltransferase ZDHHC18|zinc finger DHHC domain-containing protein 18|zinc finger, DHHC domain containing 18 20121230 -9606 84245 MRI1 UNQ6390/PRO21135 MTNA|Ypr118w HGNC:28469|Ensembl:ENSG00000037757|HPRD:14548|Vega:OTTHUMG00000180867 19 19p13.2 methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) protein-coding MRI1 methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) O M1Pi|MTR-1-P isomerase|S-methyl-5-thioribose-1-phosphate isomerase|mediator of RhoA-dependent invasion|methylthioribose-1-phosphate isomerase|translation initiation factor eIF-2B subunit alpha/beta/delta-like protein 20121230 -9606 84246 MED10 L6 NUT2|TRG20 HGNC:28760|MIM:612382|Ensembl:ENSG00000133398|HPRD:14680|Vega:OTTHUMG00000161682 5 5p15.31 mediator complex subunit 10 protein-coding MED10 mediator complex subunit 10 O TRG-17|TRG-20|mediator of RNA polymerase II transcription subunit 10|mediator of RNA polymerase II transcription, subunit 10|transformation-related gene 17 protein|transformation-related gene 20 protein 20121230 -9606 84247 LDOC1L - Mar6|Mart6|dJ1033E15.2 HGNC:13343|Ensembl:ENSG00000188636|HPRD:13982|Vega:OTTHUMG00000150465 22 22q13.31 leucine zipper, down-regulated in cancer 1-like protein-coding LDOC1L leucine zipper, down-regulated in cancer 1-like O leucine zipper protein down-regulated in cancer cells-like|mammalian retrotransposon-derived protein 6|protein LDOC1L 20121230 -9606 84248 FYTTD1 - UIF HGNC:25407|Ensembl:ENSG00000122068|HPRD:10909|Vega:OTTHUMG00000155453 3 3q29 forty-two-three domain containing 1 protein-coding FYTTD1 forty-two-three domain containing 1 O UAP56-interacting factor|forty-two-three domain-containing protein 1|protein 40-2-3 20121230 -9606 84249 PSD2 - - HGNC:19092|Ensembl:ENSG00000146005|HPRD:15190|Vega:OTTHUMG00000129240 5 5q31.2 pleckstrin and Sec7 domain containing 2 protein-coding PSD2 pleckstrin and Sec7 domain containing 2 O 6330404E20Rik|PH and SEC7 domain-containing protein 2|pleckstrin homology and SEC7 domain-containing protein 2 20121230 -9606 84250 ANKRD32 - BRCTD1|BRCTx HGNC:25408|Ensembl:ENSG00000133302|HPRD:08538|Vega:OTTHUMG00000121133 5 5q15 ankyrin repeat domain 32 protein-coding ANKRD32 ankyrin repeat domain 32 O BRCT domain containing 1|BRCT domain-containing protein 1|ankyrin repeat domain-containing protein 32 20121230 -9606 84251 SGIP1 RP11-266I14.1 - HGNC:25412|MIM:611540|Ensembl:ENSG00000118473|HPRD:10910|Vega:OTTHUMG00000009161 1 1p31.3 SH3-domain GRB2-like (endophilin) interacting protein 1 protein-coding SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 O SH3-containing GRB2-like protein 3-interacting protein 1|endophilin-3-interacting protein 20121230 -9606 84253 GARNL3 RP11-356B19.1 bA356B19.1 HGNC:25425|Ensembl:ENSG00000136895|HPRD:13567|Vega:OTTHUMG00000020700 9 9q33.3 GTPase activating Rap/RanGAP domain-like 3 protein-coding GARNL3 GTPase activating Rap/RanGAP domain-like 3 O GTPase activating RANGAP domain-like 3|GTPase-activating Rap/Ran-GAP domain-like protein 3 20121230 -9606 84254 CAMKK1 - CAMKKA HGNC:1469|MIM:611411|Ensembl:ENSG00000004660|HPRD:13000|Vega:OTTHUMG00000090725 17 17p13.2 calcium/calmodulin-dependent protein kinase kinase 1, alpha protein-coding CAMKK1 calcium/calmodulin-dependent protein kinase kinase 1, alpha O CAMKK alpha protein|caM-KK 1|caM-KK alpha|caM-kinase IV kinase|caM-kinase kinase 1|caM-kinase kinase alpha|caMKK 1|calcium/calmodulin-dependent protein kinase kinase 1|calcium/calmodulin-dependent protein kinase kinase alpha 20121230 -9606 84255 SLC37A3 - - HGNC:20651|Ensembl:ENSG00000157800|HPRD:15381|Vega:OTTHUMG00000157343 7 7q34 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 protein-coding SLC37A3 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 O solute carrier family 37 member 3|sugar phosphate exchanger 3 20121230 -9606 84256 FLYWCH1 - - HGNC:25404|Ensembl:ENSG00000059122|HPRD:13222|Vega:OTTHUMG00000177364 16 16p13.3 FLYWCH-type zinc finger 1 protein-coding FLYWCH1 FLYWCH-type zinc finger 1 O FLYWCH-type zinc finger-containing protein 1 20121230 -9606 84258 SYT3 - SytIII HGNC:11511|MIM:600327|Ensembl:ENSG00000213023|HPRD:08977 19 19q13.33 synaptotagmin III protein-coding SYT3 synaptotagmin III O synaptotagmin-3 20121230 -9606 84259 DCUN1D5 - - HGNC:28409|Ensembl:ENSG00000137692|HPRD:14520|Vega:OTTHUMG00000165822 11 11q22.3 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) protein-coding DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) O DCN1-like protein 5|DCUN1 domain-containing protein 5|defective in cullin neddylation protein 1-like protein 5 20121230 -9606 84260 TCHP - TpMs HGNC:28135|MIM:612654|Ensembl:ENSG00000139437|HPRD:14403|Vega:OTTHUMG00000169281 12 12q24.11 trichoplein, keratin filament binding protein-coding TCHP trichoplein, keratin filament binding O mitochondrial protein with oncostatic activity|mitostatin|trichoplein keratin filament-binding protein|tumor suppressor protein 20121230 -9606 84261 FBXW9 - Fbw9 HGNC:28136|MIM:609074|Ensembl:ENSG00000132004|HPRD:12361|Vega:OTTHUMG00000150152 19 19p13.2 F-box and WD repeat domain containing 9 protein-coding FBXW9 F-box and WD repeat domain containing 9 O F-box and WD-40 domain protein 9|F-box and WD-40 domain-containing protein 9|F-box and WD-40 repeat containing protein 9|F-box/WD repeat-containing protein 9|specificity factor for SCF ubiquitin ligase 20121230 -9606 84262 PSMG3 - C7orf48|PAC3 HGNC:22420|Ensembl:ENSG00000157778|HPRD:14404|Vega:OTTHUMG00000119043 7 7p22.3 proteasome (prosome, macropain) assembly chaperone 3 protein-coding PSMG3 proteasome (prosome, macropain) assembly chaperone 3 O PAC-3|hPAC3|proteasome assembling chaperone 3|proteasome assembly chaperone 3 20121230 -9606 84263 HSDL2 RP11-32M23.1 C9orf99|SDR13C1 HGNC:18572|Ensembl:ENSG00000119471|HPRD:13679|Vega:OTTHUMG00000020504 9 9q32 hydroxysteroid dehydrogenase like 2 protein-coding HSDL2 hydroxysteroid dehydrogenase like 2 O hydroxysteroid dehydrogenase-like protein 2|short chain dehydrogenase/reductase family 13C, member 1 20121230 -9606 84264 HAGHL - - HGNC:14177|Ensembl:ENSG00000103253|HPRD:17087|Vega:OTTHUMG00000170560 16 16p13.3 hydroxyacylglutathione hydrolase-like protein-coding HAGHL hydroxyacylglutathione hydrolase-like O GLO2-like/ RJD12|hydroxyacylglutathione hydrolase-like protein 20121230 -9606 84265 POLR3GL - RPC32HOM|flj32422 HGNC:28466|Ensembl:ENSG00000121851|HPRD:14546|Vega:OTTHUMG00000013739 1 1q21.1 polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like protein-coding POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like O DNA-directed RNA polymerase III subunit G-like|DNA-directed RNA polymerase III subunit RPC7-like|RNA polymerase III subunit C7-like|RPC32-like protein|alternative RNA polymerase III subunit 32 20121230 -9606 84266 ALKBH7 UNQ6002/PRO34564 ABH7|SPATA11|UNQ6002 HGNC:21306|MIM:613305|Ensembl:ENSG00000125652|HPRD:15425 19 19p13.3 alkB, alkylation repair homolog 7 (E. coli) protein-coding ALKBH7 alkB, alkylation repair homolog 7 (E. coli) O alkylated DNA repair protein alkB homolog 7|probable alpha-ketoglutarate-dependent dioxygenase ABH7|spermatogenesis associated 11|spermatogenesis cell proliferation related protein|spermatogenesis cell proliferation-related protein|spermatogenesis-associated protein 11 20121230 -9606 84267 C9orf64 RP11-575L7.5 - HGNC:28144|MIM:611342|Ensembl:ENSG00000165118|HPRD:12969|Vega:OTTHUMG00000020111 9 9q21.32 chromosome 9 open reading frame 64 protein-coding C9orf64 chromosome 9 open reading frame 64 O UPF0553 protein C9orf64 20121230 -9606 84268 RPAIN - HRIP|RIP HGNC:28641|Ensembl:ENSG00000129197|HPRD:14615|Vega:OTTHUMG00000177872 17 17p13.2 RPA interacting protein protein-coding RPAIN RPA interacting protein O RAP interaction protein|RPA-interacting protein|nuclear transporter 20121230 -9606 84269 CHCHD5 - C2orf9|MIC14 HGNC:17840|Ensembl:ENSG00000125611|HPRD:13046|Vega:OTTHUMG00000131312 2 2q13 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 O coiled-coil-helix-coiled-coil-helix domain-containing protein 5|mitochondrial intermembrane space cysteine motif protein of 14 kDa homolog 20121230 -9606 84270 C9orf89 - BinCARD|bA370F5.1 HGNC:28148|Ensembl:ENSG00000165233|HPRD:12985|Vega:OTTHUMG00000020243 9 9q22.31 chromosome 9 open reading frame 89 protein-coding C9orf89 chromosome 9 open reading frame 89 O Bcl10-interacting protein with CARD|bcl10-interacting CARD protein 20121230 -9606 84271 POLDIP3 RP1-222E13.9 PDIP46|SKAR HGNC:23782|MIM:611520|Ensembl:ENSG00000100227|HPRD:17875|Vega:OTTHUMG00000150887 22 22q13.2 polymerase (DNA-directed), delta interacting protein 3 protein-coding POLDIP3 polymerase (DNA-directed), delta interacting protein 3 O 46 kDa DNA polymerase delta interaction protein|RNA-binding protein P46|S6K1 Aly/REF-like target|p46|polymerase delta interacting protein 46|polymerase delta-interacting protein 3 20121230 -9606 84272 YIPF4 Nbla11189 FinGER4 HGNC:28145|Ensembl:ENSG00000119820|HPRD:14410|Vega:OTTHUMG00000128452 2 2p22.3 Yip1 domain family, member 4 protein-coding YIPF4 Yip1 domain family, member 4 O YIP1 family member 4|protein YIPF4|putative protein product of Nbla11189 20121230 -9606 84273 NOA1 - C4orf14|hAtNOS1|hNOA1|mAtNOS1 HGNC:28473|MIM:614919|Ensembl:ENSG00000084092|HPRD:12823|Vega:OTTHUMG00000128773 4 4q12 nitric oxide associated 1 protein-coding NOA1 nitric oxide associated 1 O nitric oxide associated-1|nitric oxide synthase, mitochondrial (putative)|nitric oxide-associated protein 1|putative ortholog of Arabidopsis mitochondrial nitric oxide synthase 20121230 -9606 84274 COQ5 - - HGNC:28722|Ensembl:ENSG00000110871|HPRD:17560|Vega:OTTHUMG00000169375 12 12q24.31 coenzyme Q5 homolog, methyltransferase (S. cerevisiae) protein-coding COQ5 coenzyme Q5 homolog, methyltransferase (S. cerevisiae) O 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial|ubiquinone biosynthesis methyltransferase COQ5, mitochondrial 20121230 -9606 84275 SLC25A33 - BMSC-MCP|PNC1 HGNC:29681|MIM:610816|Ensembl:ENSG00000171612|HPRD:14631|Vega:OTTHUMG00000001322 1 1p36.22 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 protein-coding SLC25A33 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 O PNC1 protein|bone marrow stromal cell mitochondrial carrier protein|huBMSC-MCP|mitochondrial carrier protein|novel mitochondrial carrier protein|solute carrier family 25 member 33|solute carrier family 25, member 33 20121230 -9606 84276 NICN1 - - HGNC:18317|MIM:611516|Ensembl:ENSG00000145029|HPRD:17631|Vega:OTTHUMG00000156848 3 3p21.31 nicolin 1 protein-coding NICN1 nicolin 1 O NPCEDRG|PGs5|nicolin-1|tubulin polyglutamylase complex subunit 5 20121230 -9606 84277 DNAJC30 - WBSCR18 HGNC:16410|Ensembl:ENSG00000176410|HPRD:10303|Vega:OTTHUMG00000023290 7 7q11.23 DnaJ (Hsp40) homolog, subfamily C, member 30 protein-coding DNAJC30 DnaJ (Hsp40) homolog, subfamily C, member 30 O Williams Beuren syndrome chromosome region 18|dnaJ homolog subfamily C member 30|williams-Beuren syndrome chromosomal region 18 protein 20121230 -9606 84278 HIATL2 RP11-330M2.2 - HGNC:23672|HPRD:17102 9 9q22.33 hippocampus abundant transcript-like 2 pseudo HIATL2 hippocampus abundant transcript-like 2 O - 20121230 -9606 84279 PRADC1 UNQ833/PRO1760 C2orf7|PAP21 HGNC:16047|Ensembl:ENSG00000135617|HPRD:12815|Vega:OTTHUMG00000129773 2 2p13.2 protease-associated domain containing 1 protein-coding PRADC1 protease-associated domain containing 1 O hPAP21|protease-associated domain-containing glycoprotein 21 kDa|protease-associated domain-containing protein 1|protease-associated domain-containing protein of 21 kDa 20121230 -9606 84280 BTBD10 - GMRP-1|GMRP1 HGNC:21445|Ensembl:ENSG00000148925|HPRD:17045|Vega:OTTHUMG00000165787 11 11p15.2 BTB (POZ) domain containing 10 protein-coding BTBD10 BTB (POZ) domain containing 10 O BTB (broad-complex tramtrack and bric-a-brac/pox virus and zinc finger) domain-containing protein 10|BTB/POZ domain-containing protein 10|K+ channel tetramerization protein 20121230 -9606 84281 C2orf88 - smAKAP HGNC:28191|Ensembl:ENSG00000187699|HPRD:14436|Vega:OTTHUMG00000154361 2 2q32.2 chromosome 2 open reading frame 88 protein-coding C2orf88 chromosome 2 open reading frame 88 O Uncharacterized protein FLJ90687|small A-kinase anchoring protein 20121230 -9606 84282 RNF135 L13 MMFD|REUL|Riplet HGNC:21158|MIM:611358|Ensembl:ENSG00000181481|HPRD:11506|Vega:OTTHUMG00000132867 17 17q11.2 ring finger protein 135 protein-coding RNF135 ring finger protein 135 O E3 ubiquitin-protein ligase RNF135|RIG-I E3 ubiquitin ligase 20121230 -9606 84283 TMEM79 RP11-443G18.1 - HGNC:28196|Ensembl:ENSG00000163472|HPRD:17481|Vega:OTTHUMG00000019788 1 1q22 transmembrane protein 79 protein-coding TMEM79 transmembrane protein 79 O - 20121230 -9606 84284 NTPCR RP4-659I19.2 C1orf57|HCR-NTPase|RP4-678E16.2 HGNC:28204|Ensembl:ENSG00000135778|HPRD:17486|Vega:OTTHUMG00000037822 1 1q42.2 nucleoside-triphosphatase, cancer-related protein-coding NTPCR nucleoside-triphosphatase, cancer-related O NTPase|cancer-related nucleoside-triphosphatase|human cancer-related NTPase|nucleoside triphosphate phosphohydrolase|nucleoside-triphosphatase C1orf57 20121230 -9606 84285 EIF1AD - haponin HGNC:28147|Ensembl:ENSG00000175376|HPRD:14411|Vega:OTTHUMG00000166671 11 11q13.1 eukaryotic translation initiation factor 1A domain containing protein-coding EIF1AD eukaryotic translation initiation factor 1A domain containing O eukaryotic translation initiation factor 1A domain-containing protein|probable RNA-binding protein EIF1AD 20121230 -9606 84286 TMEM175 - - HGNC:28709|Ensembl:ENSG00000127419|HPRD:14648|Vega:OTTHUMG00000118996 4 4p16.3 transmembrane protein 175 protein-coding TMEM175 transmembrane protein 175 O - 20121230 -9606 84287 ZDHHC16 RP11-452K12.10-003 APH2 HGNC:20714|Ensembl:ENSG00000171307|HPRD:15712|Vega:OTTHUMG00000018847 10 10q24.1 zinc finger, DHHC-type containing 16 protein-coding ZDHHC16 zinc finger, DHHC-type containing 16 O Abl-philin 2|DHHC-16|probable palmitoyltransferase ZDHHC16|zinc finger DHHC domain-containing protein 16|zinc finger, DHHC domain containing 16 20121230 -9606 84288 EFCAB2 - - HGNC:28166|Ensembl:ENSG00000203666|HPRD:14423|Vega:OTTHUMG00000040474 1 1q44 EF-hand calcium binding domain 2 protein-coding EFCAB2 EF-hand calcium binding domain 2 O EF-hand calcium-binding domain-containing protein 2 20121230 -9606 84289 ING5 - p28ING5 HGNC:19421|MIM:608525|Ensembl:ENSG00000168395|HPRD:16348|Vega:OTTHUMG00000151501 2 2q37.3 inhibitor of growth family, member 5 protein-coding ING5 inhibitor of growth family, member 5 O inhibitor of growth protein 5 20121230 -9606 84290 CAPNS2 - - HGNC:16371|Ensembl:ENSG00000256812|HPRD:16682|Vega:OTTHUMG00000167812 16 16q12.2 calpain, small subunit 2 protein-coding CAPNS2 calpain, small subunit 2 O CSS2|calcium-dependent protease small subunit 2|calpain small subunit 2 20121230 -9606 84292 WDR83 - MORG1 HGNC:32672|Ensembl:ENSG00000123154|HPRD:14730|Vega:OTTHUMG00000169356 19 19p13.2 WD repeat domain 83 protein-coding WDR83 WD repeat domain 83 O MAPK organizer 1|WD repeat domain-containing protein 83|mitogen-activated protein kinase organizer 1 20121230 -9606 84293 FAM213A PRO2290 C10orf58|PAMM HGNC:28651|Ensembl:ENSG00000122378|HPRD:12580|Vega:OTTHUMG00000018614 10 10q23.1 family with sequence similarity 213, member A protein-coding FAM213A family with sequence similarity 213, member A O UPF0765 protein C10orf58|peroxiredoxin (PRX)-like 2 activated in M-CSF stimulated monocytes|peroxiredoxin-like 2 activated in M-CSF stimulated monocytes|redox-regulatory protein FAM213A|redox-regulatory protein PAMM 20121230 -9606 84294 UTP23 - C8orf53 HGNC:28224|Ensembl:ENSG00000147679|HPRD:17499|Vega:OTTHUMG00000164958 8 8q24.11 UTP23, small subunit (SSU) processome component, homolog (yeast) protein-coding UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast) O rRNA-processing protein UTP23 homolog 20121230 -9606 84295 PHF6 AC004383.6 BFLS|BORJ|CENP-31 HGNC:18145|MIM:300414|Ensembl:ENSG00000156531|HPRD:02330|Vega:OTTHUMG00000022453 X Xq26.3 PHD finger protein 6 protein-coding PHF6 PHD finger protein 6 O PHD-like zinc finger protein|centromere protein 31 20121230 -9606 84296 GINS4 - SLD5 HGNC:28226|MIM:610611|Ensembl:ENSG00000147536|HPRD:11583|Vega:OTTHUMG00000164079 8 8p11.21 GINS complex subunit 4 (Sld5 homolog) protein-coding GINS4 GINS complex subunit 4 (Sld5 homolog) O DNA replication complex GINS protein SLD5|SLD5 homolog 20121230 -9606 84298 LLPH - C12orf31|hLLP HGNC:28229|Ensembl:ENSG00000139233|HPRD:11308|Vega:OTTHUMG00000168959 12 12q14.3 LLP homolog, long-term synaptic facilitation (Aplysia) protein-coding LLPH LLP homolog, long-term synaptic facilitation (Aplysia) O human LAPS18-like protein|protein LLP homolog 20121230 -9606 84299 MIEN1 - C17orf37|C35|ORB3|RDX12|XTP4 HGNC:28230|MIM:611802|Ensembl:ENSG00000141741|HPRD:12681|Vega:OTTHUMG00000133252 17 17q12 migration and invasion enhancer 1 protein-coding MIEN1 migration and invasion enhancer 1 O HBV X-transactivated gene 4 protein|HBV XAg-transactivated protein 4|protein C17orf37 20121230 -9606 84300 MNF1 RP11-6B20.2 C6orf125|Cbp6|M19|bA6B20.2 HGNC:21237|MIM:614461|Ensembl:ENSG00000137288|HPRD:12847|Vega:OTTHUMG00000014534 6 6p21.31 mitochondrial nucleoid factor 1 protein-coding MNF1 mitochondrial nucleoid factor 1 O breast cancer associated protein SGA-81M|breast cancer-associated protein SGA-81M|cytochrome B protein synthesis 6 homolog|mitochondrial protein M19 20121230 -9606 84301 DDI2 - RP4-680D5.5 HGNC:24578|Ensembl:ENSG00000197312|HPRD:18702|Vega:OTTHUMG00000002381 1 1p36.21 DNA-damage inducible 1 homolog 2 (S. cerevisiae) protein-coding DDI2 DNA-damage inducible 1 homolog 2 (S. cerevisiae) O DDI1, DNA-damage inducible 1, homolog 2|DNA-damage inducible protein 2 (DDI2)|protein DDI1 homolog 2 20121230 -9606 84302 TMEM246 - C9orf125 HGNC:28180|Ensembl:ENSG00000165152|HPRD:12940|Vega:OTTHUMG00000020381 9 9q31.1 transmembrane protein 246 protein-coding TMEM246 transmembrane protein 246 O transmembrane protein C9orf125 20121230 -9606 84303 CHCHD6 - CHCM1|PPP1R23 HGNC:28184|Ensembl:ENSG00000159685|HPRD:13047|Vega:OTTHUMG00000159601 3 3q21.3 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding CHCHD6 coiled-coil-helix-coiled-coil-helix domain containing 6 O coiled coil helix cristae morphology 1|coiled coil helix cristae morphology protein 1|coiled-coil-helix cristae morphology 1|coiled-coil-helix-coiled-coil-helix domain-containing protein 6, mitochondrial|protein phosphatase 1, regulatory subunit 23 20121230 -9606 84304 NUDT22 PP11246 - HGNC:28189|Ensembl:ENSG00000149761|HPRD:14434|Vega:OTTHUMG00000167791 11 11q13.1 nudix (nucleoside diphosphate linked moiety X)-type motif 22 protein-coding NUDT22 nudix (nucleoside diphosphate linked moiety X)-type motif 22 O nucleoside diphosphate-linked moiety X motif 22|nudix motif 22 20121230 -9606 84305 WIBG - PYM HGNC:30258|Ensembl:ENSG00000170473|HPRD:17940|Vega:OTTHUMG00000170220 12 12q13.2 within bgcn homolog (Drosophila) protein-coding WIBG within bgcn homolog (Drosophila) O partner of Y14 and mago|protein wibg homolog 20121230 -9606 84306 PDCD2L - - HGNC:28194|Ensembl:ENSG00000126249|HPRD:17480|Vega:OTTHUMG00000182089 19 19q13.11 programmed cell death 2-like protein-coding PDCD2L programmed cell death 2-like O programmed cell death protein 2-like 20121230 -9606 84307 ZNF397 - ZNF47|ZSCAN15 HGNC:18818|MIM:609601|Ensembl:ENSG00000186812|HPRD:18335|Vega:OTTHUMG00000178532 18 18q12.2 zinc finger protein 397 protein-coding ZNF397 zinc finger protein 397 O zinc finger and SCAN domain-containing protein 15|zinc finger protein 47 20121230 -9606 84309 NUDT16L1 - SDOS HGNC:28154|Ensembl:ENSG00000168101|HPRD:15309|Vega:OTTHUMG00000129471 16 16p13.3 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 protein-coding NUDT16L1 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 O NUDT16-like protein 1|protein syndesmos 20121230 -9606 84310 C7orf50 FP15621 YCR016W HGNC:22421|Ensembl:ENSG00000146540|HPRD:14413|Vega:OTTHUMG00000151477 7 7p22.3 chromosome 7 open reading frame 50 protein-coding C7orf50 chromosome 7 open reading frame 50 O uncharacterized protein C7orf50 20121230 -9606 84311 MRPL45 - L45mt|MRP-L45 HGNC:16651|MIM:611850|Ensembl:ENSG00000174100|HPRD:14764|Vega:OTTHUMG00000133120 17 17q21.2 mitochondrial ribosomal protein L45 protein-coding MRPL45 mitochondrial ribosomal protein L45 O 39S ribosomal protein L45, mitochondrial 20121230 -9606 84312 BRMS1L - BRMS1 HGNC:20512|Ensembl:ENSG00000100916|HPRD:16564|Vega:OTTHUMG00000170559 14 14q13.2 breast cancer metastasis-suppressor 1-like protein-coding BRMS1L breast cancer metastasis-suppressor 1-like O BRMS1-homolog protein p40|BRMS1-like protein p40|breast cancer metastasis-suppressor 1-like protein 20121230 -9606 84313 VPS25 - DERP9|EAP20|FAP20 HGNC:28122|MIM:610907|Ensembl:ENSG00000131475|HPRD:14396|Vega:OTTHUMG00000180649 17 17q21.31 vacuolar protein sorting 25 homolog (S. cerevisiae) protein-coding VPS25 vacuolar protein sorting 25 homolog (S. cerevisiae) O ELL-associated protein of 20 kDa|ESCRT-II complex subunit VPS25|dermal papilla-derived protein 9|vacuolar protein-sorting-associated protein 25 20121230 -9606 84314 TMEM107 DC20 GRVS638|PRO1268 HGNC:28128|Ensembl:ENSG00000179029|HPRD:14400|Vega:OTTHUMG00000166276 17 17p13.1 transmembrane protein 107 protein-coding TMEM107 transmembrane protein 107 O - 20121230 -9606 84315 MON1A - SAND1 HGNC:28207|MIM:611464|Ensembl:ENSG00000164077|HPRD:17586|Vega:OTTHUMG00000156737 3 3p21.31 MON1 homolog A (yeast) protein-coding MON1A MON1 homolog A (yeast) O vacuolar fusion protein MON1 homolog A 20121230 -9606 84316 LSMD1 - PFAAP2 HGNC:28212|Ensembl:ENSG00000183011|HPRD:17491|Vega:OTTHUMG00000178023 17 17p13.1 LSM domain containing 1 protein-coding LSMD1 LSM domain containing 1 O LSM domain-containing protein 1|phosphonoformate immuno-associated protein 2|regulated by phosphonoformate 20121230 -9606 84317 CCDC115 - ccp1 HGNC:28178|MIM:613734|Ensembl:ENSG00000136710|HPRD:14428|Vega:OTTHUMG00000131631 2 2q21.1 coiled-coil domain containing 115 protein-coding CCDC115 coiled-coil domain containing 115 O coiled-coil domain-containing protein 115 20121230 -9606 84318 CCDC77 - - HGNC:28203|Ensembl:ENSG00000120647|HPRD:17485|Vega:OTTHUMG00000129214 12 12p13.33 coiled-coil domain containing 77 protein-coding CCDC77 coiled-coil domain containing 77 O coiled-coil domain-containing protein 77 20121230 -9606 84319 CMSS1 - C3orf26 HGNC:28666|Ensembl:ENSG00000184220|HPRD:11351|Vega:OTTHUMG00000159054 3 3q12.1 cms1 ribosomal small subunit homolog (yeast) protein-coding CMSS1 cms1 ribosomal small subunit homolog (yeast) O uncharacterized protein C3orf26 20121230 -9606 84320 ACBD6 - - HGNC:23339|Ensembl:ENSG00000135847|HPRD:12416|Vega:OTTHUMG00000035117 1 1q25.1 acyl-CoA binding domain containing 6 protein-coding ACBD6 acyl-CoA binding domain containing 6 O acyl-CoA-binding domain-containing protein 6|acyl-Coenzyme A binding domain containing 6 20121230 -9606 84321 THOC3 - TEX1 HGNC:19072|MIM:606929|Ensembl:ENSG00000051596|HPRD:09497|Vega:OTTHUMG00000130658 5 5q35.2 THO complex 3 protein-coding THOC3 THO complex 3 O TEX1 homolog|THO complex subunit 3|hTREX45|tho3 20121230 -9606 84322 C18orf12 - HEIL1|HsT2508 HGNC:24918 18 18q21.1 chromosome 18 open reading frame 12 unknown C18orf12 chromosome 18 open reading frame 12 O - 20121230 -9606 84324 SARNP - CIP29|HCC1|HSPC316|THO1 HGNC:24432|MIM:610049|Ensembl:ENSG00000205323|HPRD:16716|Vega:OTTHUMG00000170441 12 12q13.2 SAP domain containing ribonucleoprotein protein-coding SARNP SAP domain containing ribonucleoprotein O SAP domain-containing ribonucleoprotein|cytokine induced protein 29 kDa|cytokine-induced protein of 29 kDa|hepatocellular carcinoma 1|nuclear protein Hcc-1|proliferation associated cytokine-inducible protein CIP29|proliferation-associated cytokine-inducible protein CIP29 20121230 -9606 84326 C16orf13 JFP2 - HGNC:14141|Ensembl:ENSG00000130731|HPRD:17482|Vega:OTTHUMG00000047855 16 16p13.3 chromosome 16 open reading frame 13 protein-coding C16orf13 chromosome 16 open reading frame 13 O UPF0585 protein C16orf13 20121230 -9606 84327 ZBED3 - - HGNC:20711|Ensembl:ENSG00000132846|HPRD:15687|Vega:OTTHUMG00000102131 5 5q13.3 zinc finger, BED-type containing 3 protein-coding ZBED3 zinc finger, BED-type containing 3 O 2610005H11Rik|zinc finger BED domain-containing protein 3|zinc finger, BED domain containing 3 20121230 -9606 84328 LZIC - - HGNC:17497|MIM:610458|Ensembl:ENSG00000162441|HPRD:14340|Vega:OTTHUMG00000001804 1 1p36.22 leucine zipper and CTNNBIP1 domain containing protein-coding LZIC leucine zipper and CTNNBIP1 domain containing O leucine zipper and CTNNBIP1 domain-containing protein|leucine zipper and ICAT homologous domain-containing protein|leucine zipper domain and ICAT homologous domain containing|protein LZIC 20121230 -9606 84329 HVCN1 UNQ578/PRO1140 HV1|VSOP HGNC:28240|MIM:611227|Ensembl:ENSG00000122986|HPRD:17507|Vega:OTTHUMG00000169530 12 12q24.11 hydrogen voltage-gated channel 1 protein-coding HVCN1 hydrogen voltage-gated channel 1 O voltage sensor domain-only protein|voltage-gated hydrogen channel 1 20121230 -9606 84330 ZNF414 - ZFP414 HGNC:20630|Ensembl:ENSG00000133250|HPRD:17511 19 19p13.2 zinc finger protein 414 protein-coding ZNF414 zinc finger protein 414 O - 20121230 -9606 84331 FAM195A - C16orf14|c349E10.1 HGNC:14142|Ensembl:ENSG00000172366|HPRD:17503|Vega:OTTHUMG00000048042 16 16p13.3 family with sequence similarity 195, member A protein-coding FAM195A family with sequence similarity 195, member A O protein FAM195A 20121230 -9606 84332 DYDC2 - - HGNC:23468|Ensembl:ENSG00000133665|HPRD:11311|Vega:OTTHUMG00000018610 10 10q23.1 DPY30 domain containing 2 protein-coding DYDC2 DPY30 domain containing 2 O DPY30 domain-containing protein 2 20121230 -9606 84333 PCGF5 - RNF159 HGNC:28264|Ensembl:ENSG00000180628|HPRD:17825|Vega:OTTHUMG00000018740 10 10q23.32 polycomb group ring finger 5 protein-coding PCGF5 polycomb group ring finger 5 O RING finger protein 159|polycomb group RING finger protein 5|ring finger protein (C3HC4 type) 159 20121230 -9606 84334 APOPT1 - APOP1|C14orf153 HGNC:20492|Ensembl:ENSG00000256053|Ensembl:ENSG00000256500|HPRD:12637|Vega:OTTHUMG00000153929 14 14q32.33 apoptogenic 1, mitochondrial protein-coding APOPT1 apoptogenic 1, mitochondrial O UPF0671 protein C14orf153|apoptogenic protein 1, mitochondrial 20121230 -9606 84335 AKT1S1 - Lobe|PRAS40 HGNC:28426|MIM:610221|Ensembl:ENSG00000204673|HPRD:12441|Vega:OTTHUMG00000150246 19 19q13.33 AKT1 substrate 1 (proline-rich) protein-coding AKT1S1 AKT1 substrate 1 (proline-rich) O 40 kDa proline-rich AKT substrate|proline-rich AKT1 substrate 1|proline-rich Akt substrate, 40 kDa 20121230 -9606 84336 TMEM101 - - HGNC:28653|Ensembl:ENSG00000091947|HPRD:14623|Vega:OTTHUMG00000181803 17 17q21.31 transmembrane protein 101 protein-coding TMEM101 transmembrane protein 101 O putative NF-kappa-B-activating protein 130 20121230 -9606 84337 ELOF1 - ELF1 HGNC:28691|Ensembl:ENSG00000130165|HPRD:14639|Vega:OTTHUMG00000182034 19 19p13.2 elongation factor 1 homolog (S. cerevisiae) protein-coding ELOF1 elongation factor 1 homolog (S. cerevisiae) O elongation factor 1 homolog (ELF1, S. cerevisiae)|transcription elongation factor 1 homolog 20121230 -9606 84340 GFM2 MSTP027 EF-G2mt|EFG2|MRRF2|MST027|RRF2|RRF2mt|hEFG2|mEF-G 2 HGNC:29682|MIM:606544|Ensembl:ENSG00000164347|HPRD:09413|Vega:OTTHUMG00000102058 5 5q13 G elongation factor, mitochondrial 2 protein-coding GFM2 G elongation factor, mitochondrial 2 O MSTP027|elongation factor G 2, mitochondrial|mitochondrial elongation factor G2|mitochondrial ribosome recycling factor 2|ribosome-releasing factor 2, mitochondrial 20121230 -9606 84342 COG8 hCG_2027080 CDG2H|DOR1 HGNC:18623|MIM:606979|Ensembl:ENSG00000213380|HPRD:07374|Vega:OTTHUMG00000154277 16 16q22.1 component of oligomeric golgi complex 8 protein-coding COG8 component of oligomeric golgi complex 8 O COG complex subunit 8|conserved oligomeric Golgi complex subunit 8|conserved oligomeric golgi complex component 8|dependent on RIC1 20121230 -9606 84343 HPS3 - SUTAL HGNC:15597|MIM:606118|Ensembl:ENSG00000163755|HPRD:05835|Vega:OTTHUMG00000159548 3 3q24 Hermansky-Pudlak syndrome 3 protein-coding HPS3 Hermansky-Pudlak syndrome 3 O Hermansky-Pudlak syndrome 3 protein 20121230 -9606 84364 ARFGAP2 Nbla10535 IRZ|NBLA10535|ZFP289|ZNF289 HGNC:13504|MIM:606908|Ensembl:ENSG00000149182|HPRD:06069|Vega:OTTHUMG00000166773 11 11p11.2-p11.12 ADP-ribosylation factor GTPase activating protein 2 protein-coding ARFGAP2 ADP-ribosylation factor GTPase activating protein 2 O ADP-ribosylation factor GTPase-activating protein 2|GTPase-activating protein ZNF289|zinc finger protein 289, ID1 regulated 20121230 -9606 84365 MKI67IP - NIFK|Nopp34 HGNC:17838|MIM:611970|Ensembl:ENSG00000155438|HPRD:17576|Vega:OTTHUMG00000131442 2 2q14.3 MKI67 (FHA domain) interacting nucleolar phosphoprotein protein-coding MKI67IP MKI67 (FHA domain) interacting nucleolar phosphoprotein O MKI67 FHA domain-interacting nucleolar phosphoprotein|hNIFK|nucleolar phosphoprotein Nopp34|nucleolar protein interacting with the FHA domain of pKi-67 20121230 -9606 84366 PRAC - C17orf92 HGNC:30591|MIM:609819|Ensembl:ENSG00000159182|HPRD:17897|Vega:OTTHUMG00000159899 17 17q21 prostate cancer susceptibility candidate protein-coding PRAC prostate cancer susceptibility candidate O prostate, rectum and colon expressed gene protein|small nuclear protein PRAC 20121230 -9606 84376 HOOK3 - HK3 HGNC:23576|MIM:607825|Ensembl:ENSG00000168172|HPRD:09699|Vega:OTTHUMG00000165278 8 8p11.21 hook homolog 3 (Drosophila) protein-coding HOOK3 hook homolog 3 (Drosophila) O h-hook3|hHK3|protein Hook homolog 3 20121230 -9606 84417 C2orf40 UNQ761/PRO1508 ECRG4 HGNC:24642|MIM:611752|Ensembl:ENSG00000119147|HPRD:13261|Vega:OTTHUMG00000130921 2 2q12.2 chromosome 2 open reading frame 40 protein-coding C2orf40 chromosome 2 open reading frame 40 O augurin|esophageal cancer related gene 4 protein|esophageal cancer-related gene 4 protein 20121230 -9606 84418 CYSTM1 ORF1-FL49 C5orf32 HGNC:30239|Ensembl:ENSG00000120306|HPRD:15091|Vega:OTTHUMG00000129243 5 5q31.3 cysteine-rich transmembrane module containing 1 protein-coding CYSTM1 cysteine-rich transmembrane module containing 1 O UPF0467 protein C5orf32|cysteine-rich and transmembrane domain-containing protein 1|putative nuclear protein ORF1-FL49 20121230 -9606 84419 C15orf48 - FOAP-11|NMES1 HGNC:29898|MIM:608409|Ensembl:ENSG00000166920|HPRD:16332|Vega:OTTHUMG00000131424 15 15q21.1 chromosome 15 open reading frame 48 protein-coding C15orf48 chromosome 15 open reading frame 48 O normal mucosa of esophagus specific 1|normal mucosa of esophagus-specific gene 1 protein 20121230 -9606 84432 PROK1 UNQ600/PRO1186 EGVEGF|PK1|PRK1 HGNC:18454|MIM:606233|Ensembl:ENSG00000143125|HPRD:06946|Vega:OTTHUMG00000011569 1 1p21 prokineticin 1 protein-coding PROK1 prokineticin 1 O EG-VEGF|black mamba toxin-related protein|endocrine-gland-derived vascular endothelial growth factor|mambakine|prokineticin-1 20121230 -9606 84433 CARD11 - BIMP3|CARMA1 HGNC:16393|MIM:607210|Ensembl:ENSG00000198286|HPRD:06234|Vega:OTTHUMG00000023023 7 7p22 caspase recruitment domain family, member 11 protein-coding CARD11 caspase recruitment domain family, member 11 O CARD-containing MAGUK protein 1|bcl10-interacting maguk protein 3|card-maguk protein 1|carma 1|caspase recruitment domain-containing protein 11 20121230 -9606 84434 THCYTX - FTX MIM:300331 X - Thrombocytosis, familial X-linked unknown - - - - 20120622 -9606 84435 GPR123 RP13-439H18.10-002 - HGNC:13838|MIM:612302|Ensembl:ENSG00000197177|HPRD:17058|Vega:OTTHUMG00000019304 10 10q26 G protein-coupled receptor 123 protein-coding GPR123 G protein-coupled receptor 123 O probable G-protein coupled receptor 123 20121230 -9606 84436 ZNF528 - - HGNC:29384|Ensembl:ENSG00000167555|HPRD:15820|Vega:OTTHUMG00000156494 19 19q13 zinc finger protein 528 protein-coding ZNF528 zinc finger protein 528 O - 20121230 -9606 84437 MSANTD4 DC25 KIAA1826 HGNC:29383|Ensembl:ENSG00000170903|HPRD:11163|Vega:OTTHUMG00000166240 11 11q22 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils protein-coding MSANTD4 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils O myb/SANT-like DNA-binding domain-containing protein 4 20121230 -9606 84439 HHIPL1 UNQ9245/PRO34761 KIAA1822|UNQ9245 HGNC:19710|Ensembl:ENSG00000182218|HPRD:13895|Vega:OTTHUMG00000171509 14 14q32 HHIP-like 1 protein-coding HHIPL1 HHIP-like 1 O ARAR9245|HHIP-like protein 1 20121230 -9606 84440 RAB11FIP4 - RAB11-FIP4 HGNC:30267|MIM:611999|Ensembl:ENSG00000131242|HPRD:11466|Vega:OTTHUMG00000132787 17 17q11.2 RAB11 family interacting protein 4 (class II) protein-coding RAB11FIP4 RAB11 family interacting protein 4 (class II) O FIP4-Rab11|arfophilin-2|rab11 family-interacting protein 4 20121230 -9606 84441 MAML2 - MAM-3|MAM2|MAM3|MLL-MAML2 HGNC:16259|MIM:607537|Ensembl:ENSG00000184384|HPRD:09608|Vega:OTTHUMG00000167677 11 11q21 mastermind-like 2 (Drosophila) protein-coding MAML2 mastermind-like 2 (Drosophila) O mam-2|mastermind-like protein 2 20121230 -9606 84443 FRMPD3 RP5-1070B1.1 - HGNC:29382|Ensembl:ENSG00000147234|Vega:OTTHUMG00000022165 X Xq22 FERM and PDZ domain containing 3 protein-coding FRMPD3 FERM and PDZ domain containing 3 O FERM and PDZ domain-containing protein 3 20121230 -9606 84444 DOT1L - DOT1|KMT4 HGNC:24948|MIM:607375|Ensembl:ENSG00000104885|HPRD:10455|Vega:OTTHUMG00000150431 19 19p13.3 DOT1-like, histone H3 methyltransferase (S. cerevisiae) protein-coding DOT1L DOT1-like, histone H3 methyltransferase (S. cerevisiae) O DOT1-like protein|H3-K79-HMTase|histone H3-K79 methyltransferase|histone methyltransferase DOT1L|histone-lysine N-methyltransferase, H3 lysine-79 specific|lysine N-methyltransferase 4 20121230 -9606 84445 LZTS2 RP11-108L7.8 LAPSER1 HGNC:29381|MIM:610454|Ensembl:ENSG00000107816|HPRD:14341|Vega:OTTHUMG00000018914 10 10q24 leucine zipper, putative tumor suppressor 2 protein-coding LZTS2 leucine zipper, putative tumor suppressor 2 O hLZTS2|leucine zipper putative tumor suppressor 2 20121230 -9606 84446 BRSK1 - hSAD1 HGNC:18994|MIM:609235|Ensembl:ENSG00000160469|HPRD:12533|Vega:OTTHUMG00000180735 19 19q13.4 BR serine/threonine kinase 1 protein-coding BRSK1 BR serine/threonine kinase 1 O BR serine/threonine-protein kinase 1|SAD1 homolog|SAD1 kinase|SadB kinase short isoform|brain-selective kinase 1|brain-specific serine/threonine-protein kinase 1|protein kinase SAD1A|serine/threonine-protein kinase BRSK1|serine/threonine-protein kinase SAD-B|synapses of Amphids Defective homolog 1 20121230 -9606 84447 SYVN1 - DER3|HRD1 HGNC:20738|MIM:608046|Ensembl:ENSG00000162298|HPRD:07618|Vega:OTTHUMG00000165607 11 11q13 synovial apoptosis inhibitor 1, synoviolin protein-coding SYVN1 synovial apoptosis inhibitor 1, synoviolin O E3 ubiquitin-protein ligase synoviolin|HMG-coA reductase degradation 1 homolog 20121230 -9606 84448 ABLIM2 - - HGNC:19195|MIM:612544|Ensembl:ENSG00000163995|Vega:OTTHUMG00000057427 4 4p16.1 actin binding LIM protein family, member 2 protein-coding ABLIM2 actin binding LIM protein family, member 2 O abLIM-2|actin binding LIM protein 2|actin-binding LIM protein 2|actin-binding LIM protein family member 2 20121230 -9606 84449 ZNF333 - - HGNC:15624|MIM:611811|Ensembl:ENSG00000160961|HPRD:15776 19 19p13 zinc finger protein 333 protein-coding ZNF333 zinc finger protein 333 O - 20121230 -9606 84450 ZNF512 - - HGNC:29380|Ensembl:ENSG00000243943|HPRD:10336|Vega:OTTHUMG00000097786 2 2p23 zinc finger protein 512 protein-coding ZNF512 zinc finger protein 512 O - 20121230 -9606 84451 KIAA1804 - MLK4|RP5-862P8.2|dJ862P8.3 MIM:614793|Ensembl:ENSG00000143674|HPRD:10087|Vega:OTTHUMG00000037889 1 1q42 mixed lineage kinase 4 protein-coding - - - mitogen-activated protein kinase kinase kinase MLK4 20121230 -9606 84455 EFCAB7 - RP4-534K7.1 HGNC:29379|Ensembl:ENSG00000203965|HPRD:17226|Vega:OTTHUMG00000008983 1 1p31.3 EF-hand calcium binding domain 7 protein-coding EFCAB7 EF-hand calcium binding domain 7 O EF-hand calcium-binding domain-containing protein 7 20121230 -9606 84456 L3MBTL3 - MBT-1|MBT1|RP11-73O6.1 HGNC:23035|Ensembl:ENSG00000198945|HPRD:11222|Vega:OTTHUMG00000015554 6 6q23 l(3)mbt-like 3 (Drosophila) protein-coding L3MBTL3 l(3)mbt-like 3 (Drosophila) O H-l(3)mbt-like protein 3|l(3)mbt-like protein 3|lethal(3)malignant brain tumor-like protein 3 20121230 -9606 84457 PHYHIPL UNQ6309/PRO20934 - HGNC:29378|Ensembl:ENSG00000165443|HPRD:15131|Vega:OTTHUMG00000018276 10 10q11 phytanoyl-CoA 2-hydroxylase interacting protein-like protein-coding PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like O phytanoyl-CoA hydroxylase-interacting protein-like 20121230 -9606 84458 LCOR - MLR2 HGNC:29503|MIM:607698|Ensembl:ENSG00000196233|HPRD:07609|Vega:OTTHUMG00000018841 10 10q24 ligand dependent nuclear receptor corepressor protein-coding LCOR ligand dependent nuclear receptor corepressor O ligand-dependent corepressor|mblk1-related protein 2 20121230 -9606 84460 ZMAT1 GHc-311G7.1 - HGNC:29377|Ensembl:ENSG00000166432|HPRD:10029|Vega:OTTHUMG00000022044 X Xq21 zinc finger, matrin-type 1 protein-coding ZMAT1 zinc finger, matrin-type 1 O zinc finger matrin-type protein 1 20121230 -9606 84461 NEURL4 - - HGNC:34410|Ensembl:ENSG00000215041|HPRD:13894|Vega:OTTHUMG00000132319 17 17p13 neuralized homolog 4 (Drosophila) protein-coding NEURL4 neuralized homolog 4 (Drosophila) O neuralized-like protein 4 20121230 -9606 84464 SLX4 - BTBD12|FANCP|MUS312 HGNC:23845|MIM:613278|Ensembl:ENSG00000188827|HPRD:12537|Vega:OTTHUMG00000074089 16 16p13.3 SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) protein-coding SLX4 SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) O BTB (POZ) domain containing 12|BTB/POZ domain-containing protein 12|structure-specific endonuclease subunit SLX4 20121230 -9606 84465 MEGF11 UNQ1949 - HGNC:29635|MIM:612454|Ensembl:ENSG00000157890|HPRD:14385|Vega:OTTHUMG00000133175 15 15q22.31 multiple EGF-like-domains 11 protein-coding MEGF11 multiple EGF-like-domains 11 O multiple EGF-like domains protein 11|multiple epidermal growth factor-like domains protein 11 20121230 -9606 84466 MEGF10 - EMARDD HGNC:29634|MIM:612453|Ensembl:ENSG00000145794|HPRD:14384|Vega:OTTHUMG00000128984 5 5q33 multiple EGF-like-domains 10 protein-coding MEGF10 multiple EGF-like-domains 10 O multiple epidermal growth factor-like domains protein 10 20121230 -9606 84467 FBN3 - - HGNC:18794|MIM:608529|Ensembl:ENSG00000142449|HPRD:10538 19 19p13 fibrillin 3 protein-coding FBN3 fibrillin 3 O fibrillin-3 20121230 -9606 84498 FAM120B - CCPG|KIAA1838|PGCC1|dJ894D12.1 HGNC:21109|MIM:612266|Ensembl:ENSG00000112584|HPRD:11165|Vega:OTTHUMG00000016080 6 6q27 family with sequence similarity 120B protein-coding FAM120B family with sequence similarity 120B O PPARG constitutive coactivator 1|PPARgamma constitutive coactivator 1|constitutive coactivator of PPAR-gamma|constitutive coactivator of PPARG|constitutive coactivator of peroxisome proliferator-activated receptor gamma 20121230 -9606 84501 SPIRE2 - Spir-2 HGNC:30623|MIM:609217|Ensembl:ENSG00000204991|HPRD:18099|Vega:OTTHUMG00000173039 16 16q24 spire homolog 2 (Drosophila) protein-coding SPIRE2 spire homolog 2 (Drosophila) O protein spire homolog 2 20121230 -9606 84502 JPH4 - JP4|JPHL1 HGNC:20156|Ensembl:ENSG00000092051|HPRD:17170|Vega:OTTHUMG00000028769 14 14q11 junctophilin 4 protein-coding JPH4 junctophilin 4 O JP-4|junctophilin like 1|junctophilin-4|junctophilin-like 1 protein 20121230 -9606 84503 ZNF527 - - HGNC:29385|Ensembl:ENSG00000189164|Vega:OTTHUMG00000048173 19 19q13.1 zinc finger protein 527 protein-coding ZNF527 zinc finger protein 527 O - 20121230 -9606 84504 NKX6-2 RP11-288G11.2 GTX|NKX6.2|NKX6B HGNC:19321|MIM:605955|Ensembl:ENSG00000148826|HPRD:09336|Vega:OTTHUMG00000019294 10 10q26 NK6 homeobox 2 protein-coding NKX6-2 NK6 homeobox 2 O NK homeobox family 6, B|NK6 transcription factor related, locus 2|glial and testis-specific homeobox protein|homeobox 6B|homeobox protein NK-6 homolog B|homeobox protein Nkx-6.2 20121230 -9606 84513 PPAPDC1B - DPPL1|HTPAP HGNC:25026|MIM:610626|Ensembl:ENSG00000147535|HPRD:13720|Vega:OTTHUMG00000165104 8 8p11.23 phosphatidic acid phosphatase type 2 domain containing 1B protein-coding PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B O diacylglycerol pyrophosphate like 1|phosphatidate phosphatase PPAPDC1B|phosphatidic acid phosphatase type 2 domain-containing protein 1B 20121230 -9606 84514 GHDC - D11LGP1|LGP1 HGNC:24438|MIM:608587|Ensembl:ENSG00000167925|HPRD:16352|Vega:OTTHUMG00000180108 17 17q21.2 GH3 domain containing protein-coding GHDC GH3 domain containing O GH3 domain-containing protein|homolog of mouse LGP1 20121230 -9606 84515 MCM8 - C20orf154|REC|dJ967N21.5 HGNC:16147|MIM:608187|Ensembl:ENSG00000125885|HPRD:12186|Vega:OTTHUMG00000031822 20 20p12.3 minichromosome maintenance complex component 8 protein-coding MCM8 minichromosome maintenance complex component 8 O DNA helicase MCM8|DNA replication licensing factor MCM8|MCM8 minichromosome maintenance deficient 8|REC homolog|minichromosome maintenance 8 20121230 -9606 84516 DCTN5 - - HGNC:24594|MIM:612962|Ensembl:ENSG00000166847|HPRD:14551|Vega:OTTHUMG00000131610 16 16p12.2 dynactin 5 (p25) protein-coding DCTN5 dynactin 5 (p25) O dynactin 4|dynactin subunit 5|dynactin subunit p25 20121230 -9606 84517 ACTRT3 - ARP-T3|ARPM1 HGNC:24022|MIM:608534|Ensembl:ENSG00000184378|HPRD:12253 3 3q26.2 actin-related protein T3 protein-coding ACTRT3 actin-related protein T3 O actin related protein M1|actin-related protein M1 20121230 -9606 84518 CNFN - PLAC8L2 HGNC:30183|MIM:611764|Ensembl:ENSG00000105427|HPRD:16729 19 19q13.2 cornifelin protein-coding CNFN cornifelin O cornefied envelope protein cornefilin 20121230 -9606 84519 ACRBP - CT23|OY-TES-1|SP32 HGNC:17195|MIM:608352|Ensembl:ENSG00000111644|HPRD:16322|Vega:OTTHUMG00000168715 12 12p13.31 acrosin binding protein protein-coding ACRBP acrosin binding protein O acrosin-binding protein|cancer/testis antigen 23|cancer/testis antigen OY-TES-1|proacrosin binding protein sp32 20121230 -9606 84520 C14orf142 - PNAS-127 HGNC:20356|Ensembl:ENSG00000170270|HPRD:16608|Vega:OTTHUMG00000171267 14 14q32.12 chromosome 14 open reading frame 142 protein-coding C14orf142 chromosome 14 open reading frame 142 O uncharacterized protein C14orf142 20121230 -9606 84522 JAGN1 - GL009 HGNC:26926|Ensembl:ENSG00000171135|HPRD:13749|Vega:OTTHUMG00000128523 3 3p25.2 jagunal homolog 1 (Drosophila) protein-coding JAGN1 jagunal homolog 1 (Drosophila) O protein jagunal homolog 1 20121230 -9606 84524 ZC3H8 - Fliz1|ZC3HDC8 HGNC:30941|Ensembl:ENSG00000144161|HPRD:11695|Vega:OTTHUMG00000153270 2 2q13 zinc finger CCCH-type containing 8 protein-coding ZC3H8 zinc finger CCCH-type containing 8 O zinc finger CCCH domain-containing protein 8|zinc finger CCCH type domain containing 8|zinc finger CCCH-type domain containing 8 20121230 -9606 84525 HOPX - CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HGNC:24961|MIM:607275|Ensembl:ENSG00000171476|HPRD:06280|Vega:OTTHUMG00000128768 4 4q12 HOP homeobox protein-coding HOPX HOP homeobox O homeodomain-only protein|lung cancer-associated Y protein|not expressed in choriocarcinoma clone 1|not expressed in choriocarcinoma protein 1|odd homeobox 1 protein|odd homeobox protein 1 20121230 -9606 84527 ZNF559 - NBLA00121 HGNC:28197|Ensembl:ENSG00000188321|HPRD:18352|Vega:OTTHUMG00000179942 19 19p13.2 zinc finger protein 559 protein-coding ZNF559 zinc finger protein 559 O putative protein product of Nbla00121 20121230 -9606 84528 RHOXF2 - CT107|PEPP-2|PEPP2|THG1 HGNC:30011|MIM:300447|Ensembl:ENSG00000131721|Vega:OTTHUMG00000022296 X Xq24 Rhox homeobox family, member 2 protein-coding RHOXF2 Rhox homeobox family, member 2 O PEPP subfamily gene 2|cancer/testis antigen 107|homeobox protein from AL590526|paired-like homeobox protein PEPP-2|rhox homeobox family member 2|testis homeobox gene 1 20121230 -9606 84529 C15orf41 - HH114 HGNC:26929|Ensembl:ENSG00000186073|HPRD:13650|Vega:OTTHUMG00000172659 15 15q14 chromosome 15 open reading frame 41 protein-coding C15orf41 chromosome 15 open reading frame 41 O uncharacterized protein C15orf41 20121230 -9606 84530 SRRM4 - KIAA1853|MU-MB-2.76|nSR100 HGNC:29389|MIM:613103|Ensembl:ENSG00000139767|HPRD:13897|Vega:OTTHUMG00000168928 12 12q24.23 serine/arginine repetitive matrix 4 protein-coding SRRM4 serine/arginine repetitive matrix 4 O medulloblastoma antigen MU-MB-2.76|neural-specific SR-related protein of 100 kDa|neural-specific serine/arginine repetitive splicing factor of 100 kDa|serine/arginine repetitive matrix protein 4 20121230 -9606 84532 ACSS1 RP4-568C11.1 ACAS2L|ACECS1|AceCS2L HGNC:16091|MIM:614355|Ensembl:ENSG00000154930|HPRD:12413|Vega:OTTHUMG00000032112 20 20p11.23-p11.21 acyl-CoA synthetase short-chain family member 1 protein-coding ACSS1 acyl-CoA synthetase short-chain family member 1 O acetate--CoA ligase 2|acetyl-coenzyme A synthetase 2-like, mitochondrial 20121230 -9606 84536 C21orf67 - C21orf69|PRED54 HGNC:15707|HPRD:10762 21 21q22.3 chromosome 21 open reading frame 67 miscRNA C21orf67 chromosome 21 open reading frame 67 O - 20121230 -9606 84539 MCHR2 - GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT HGNC:20867|MIM:606111|Ensembl:ENSG00000152034|HPRD:12088|Vega:OTTHUMG00000015270 6 6q16 melanin-concentrating hormone receptor 2 protein-coding MCHR2 melanin-concentrating hormone receptor 2 O G protein-coupled receptor 145|G protein-coupled receptor slt|G-protein coupled receptor 145|MCH receptor 2|melanin-concentrating hormone 2 20121230 -9606 84541 KBTBD8 - TA-KRP HGNC:30691|Ensembl:ENSG00000163376|HPRD:18138|Vega:OTTHUMG00000158779 3 3p14 kelch repeat and BTB (POZ) domain containing 8 protein-coding KBTBD8 kelch repeat and BTB (POZ) domain containing 8 O T-cell activation kelch repeat protein|kelch repeat and BTB domain-containing protein 8 20121230 -9606 84542 KIAA1841 - - HGNC:29387|Ensembl:ENSG00000162929|HPRD:13896|Vega:OTTHUMG00000129421 2 2q14 KIAA1841 protein-coding KIAA1841 KIAA1841 O uncharacterized protein KIAA1841 20121230 -9606 84545 MRPL43 RP11-108L7.13-001 bMRP36a HGNC:14517|MIM:611848|Ensembl:ENSG00000055950|HPRD:14762|Vega:OTTHUMG00000018920 10 10q24.31 mitochondrial ribosomal protein L43 protein-coding MRPL43 mitochondrial ribosomal protein L43 O 39S ribosomal protein L43, mitochondrial|L43mt|MRP-L43|mitochondrial ribosomal protein bMRP36a 20121230 -9606 84546 SNORD35B - RNU35B|U35B HGNC:17365 19 19q13.3 small nucleolar RNA, C/D box 35B snoRNA SNORD35B small nucleolar RNA, C/D box 35B O - 20121230 -9606 84547 PGBD1 hucep-4 HUCEP-4|SCAND4|dJ874C20.4 HGNC:19398|Ensembl:ENSG00000137338|HPRD:11426|Vega:OTTHUMG00000014520 6 6p22.1 piggyBac transposable element derived 1 protein-coding PGBD1 piggyBac transposable element derived 1 O cerebral protein 4|cerebral protein-4|piggyBac transposable element-derived protein 1 20121230 -9606 84548 TMEM185A - CXorf13|FAM11A|FRAXF HGNC:17125|MIM:300031|Ensembl:ENSG00000155984|HPRD:06504|Vega:OTTHUMG00000022625 X Xq28 transmembrane protein 185A protein-coding TMEM185A transmembrane protein 185A O ee3|family with sequence similarity 11, member A|fragile site, folic acid type, rare, fra(X)(q28) F 20121230 -9606 84549 MAK16 - MAK16L|RBM13 HGNC:13703|Ensembl:ENSG00000198042|HPRD:15223|Vega:OTTHUMG00000163957 8 8p12 MAK16 homolog (S. cerevisiae) protein-coding MAK16 MAK16 homolog (S. cerevisiae) O NNP78|RNA binding motif protein 13|RNA binding protein|protein MAK16 homolog 20121230 -9606 84552 PARD6G - PAR-6G|PAR6gamma HGNC:16076|MIM:608976|Ensembl:ENSG00000178184|HPRD:10138|Vega:OTTHUMG00000132922 18 18q23 par-6 partitioning defective 6 homolog gamma (C. elegans) protein-coding PARD6G par-6 partitioning defective 6 homolog gamma (C. elegans) O PAR-6 gamma protein|PAR6D|partitioning defective 6 homolog gamma 20121230 -9606 84553 FAXC - C6orf168|dJ273F20 HGNC:20742|Ensembl:ENSG00000146267|HPRD:12866|Vega:OTTHUMG00000015261 6 6q16.2 failed axon connections homolog (Drosophila) protein-coding FAXC failed axon connections homolog (Drosophila) O failed axon connections homolog 20121230 -9606 84557 MAP1LC3A RP11-346K17.1 ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 HGNC:6838|MIM:601242|Ensembl:ENSG00000101460|HPRD:03144|Vega:OTTHUMG00000032306 20 20q11.22 microtubule-associated protein 1 light chain 3 alpha protein-coding MAP1LC3A microtubule-associated protein 1 light chain 3 alpha O MAP1 light chain 3-like protein 1|MAP1A/1B light chain 3 A|MAP1A/MAP1B LC3 A|MAP1A/MAP1B light chain 3 A|autophagy-related ubiquitin-like modifier LC3 A|microtubule-associated proteins 1A/1B light chain 3|microtubule-associated proteins 1A/1B light chain 3A 20121230 -9606 84559 GOLGA2P2Y - GOLGA2LY|GOLGA2LY1|GOLGA2P2 HGNC:16479|MIM:400035 Y Yq11.23 golgin A2 pseudogene 2, Y-linked pseudo GOLGA2P2Y golgin A2 pseudogene 2, Y-linked O - 20121209 -9606 84560 MT4 - MT-4|MT-IV|MTIV HGNC:18705|MIM:606206|Ensembl:ENSG00000102891|HPRD:12092|Vega:OTTHUMG00000176863 16 16q13 metallothionein 4 protein-coding MT4 metallothionein 4 O metallothionein IV|metallothionein-4|metallothionein-IV 20121230 -9606 84561 SLC12A8 - CCC9 HGNC:15595|MIM:611316|Ensembl:ENSG00000221955|HPRD:11563|Vega:OTTHUMG00000159483 3 3q21.2 solute carrier family 12 (potassium/chloride transporters), member 8 protein-coding SLC12A8 solute carrier family 12 (potassium/chloride transporters), member 8 O cation-chloride cotransporter 9|solute carrier family 12 (sodium/potassium/chloride transporters), member 8|solute carrier family 12 member 8 20121230 -9606 84565 LCS1 - CHLS|CHSL|LCS HGNC:15737|MIM:214900 15 15q lymphedema-cholestasis syndrome 1 unknown LCS1 lymphedema-cholestasis syndrome 1 O - 20120622 -9606 84569 LYZL1 UNQ648/PRO1278 KAAG648|LYC2|PRO1278|bA534G20.1 HGNC:30502|Ensembl:ENSG00000120563|HPRD:14336|Vega:OTTHUMG00000017880 10 10p12.1 lysozyme-like 1 protein-coding LYZL1 lysozyme-like 1 O lysozyme-like protein 1 20121230 -9606 84570 COL25A1 - AMY|CLAC|CLAC-P|CLACP HGNC:18603|MIM:610004|Ensembl:ENSG00000188517|HPRD:09886|Vega:OTTHUMG00000150039 4 4q25 collagen, type XXV, alpha 1 protein-coding COL25A1 collagen, type XXV, alpha 1 O alzheimer disease amyloid-associated protein|collagen alpha-1(XXV) chain|collagen-like Alzheimer amyloid plaque component|collagenous Alzheimer amyloid plaque component 20121230 -9606 84572 GNPTG CAB56184 C16orf27|GNPTAG|LP2537|RJD9 HGNC:23026|MIM:607838|Ensembl:ENSG00000090581|HPRD:06384|Vega:OTTHUMG00000047835 16 16p13.3 N-acetylglucosamine-1-phosphate transferase, gamma subunit protein-coding GNPTG N-acetylglucosamine-1-phosphate transferase, gamma subunit O N-acetylglucosamine-1-phosphotransferase subunit gamma|UDP-N-acetylglucosamine-1-phosphotransferase subunit gamma|glcNAc-1-phosphotransferase subunit gamma 20121230 -9606 84612 PARD6B - PAR6B HGNC:16245|MIM:608975|Ensembl:ENSG00000124171|HPRD:18703|Vega:OTTHUMG00000032732 20 20q13.13 par-6 partitioning defective 6 homolog beta (C. elegans) protein-coding PARD6B par-6 partitioning defective 6 homolog beta (C. elegans) O PAR-6 beta|partitioning defective 6 homolog beta 20121230 -9606 84614 ZBTB37 - D430004I08Rik|ZNF908 HGNC:28365|Ensembl:ENSG00000185278|HPRD:15694|Vega:OTTHUMG00000037274 1 1q25.1 zinc finger and BTB domain containing 37 protein-coding ZBTB37 zinc finger and BTB domain containing 37 O zinc finger and BTB domain-containing protein 37 20121230 -9606 84616 KRTAP4-4 - KAP4.13|KAP4.4|KRTAP4-13|KRTAP4.13|KRTAP4.4 HGNC:16928|Ensembl:ENSG00000171396|HPRD:13945|Vega:OTTHUMG00000133428 17 17q12-q21 keratin associated protein 4-4 protein-coding KRTAP4-4 keratin associated protein 4-4 O keratin associated protein 4-13|keratin associated protein 4.4|keratin-associated protein 4-13|keratin-associated protein 4-4|keratin-associated protein 4.13|keratin-associated protein 4.4|ultrahigh sulfur keratin-associated protein 4.13|ultrahigh sulfur keratin-associated protein 4.4 20121230 -9606 84617 TUBB6 - HsT1601|TUBB-5 HGNC:20776|Ensembl:ENSG00000176014|HPRD:11349|Vega:OTTHUMG00000131692 18 18p11.21 tubulin, beta 6 class V protein-coding TUBB6 tubulin, beta 6 class V O class V beta-tubulin|tubulin beta MGC4083|tubulin beta-6 chain 20121230 -9606 84618 NT5C1A - CN-I|CN-IA|CN1|CN1A HGNC:17819|MIM:610525|Ensembl:ENSG00000116981|HPRD:14844|Vega:OTTHUMG00000009244 1 1p34.3-p33 5'-nucleotidase, cytosolic IA protein-coding NT5C1A 5'-nucleotidase, cytosolic IA O AMP-specific 5'-NT|cytosolic 5' nucleotidase, type 1A|cytosolic 5'-nucleotidase 1A|cytosolic 5'-nucleotidase IA 20121230 -9606 84619 ZGPAT RP4-583P15.3 GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP HGNC:15948|Ensembl:ENSG00000197114|HPRD:15736|Vega:OTTHUMG00000032998 20 20q13.3 zinc finger, CCCH-type with G patch domain protein-coding ZGPAT zinc finger, CCCH-type with G patch domain O g patch domain-containing protein 6|zinc finger CCCH domain-containing protein 9|zinc finger CCCH-type with G patch domain-containing protein|zinc finger and G patch domain-containing protein 20121230 -9606 84620 ST6GAL2 - SIAT2|ST6GalII HGNC:10861|MIM:608472|Ensembl:ENSG00000144057|HPRD:12237|Vega:OTTHUMG00000130923 2 2q11.2-q12.1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 protein-coding ST6GAL2 ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 O CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 2|alpha 2,6-ST 2|beta-galactoside alpha-2,6-sialyltransferase 2|beta-galactoside alpha-2,6-sialyltransferase II|sialyltransferase 2 (monosialoganglioside sialyltransferase) 20121230 -9606 84622 ZNF594 hCG_1775942 - HGNC:29392|Ensembl:ENSG00000180626|Vega:OTTHUMG00000132059 17 17p13 zinc finger protein 594 protein-coding ZNF594 zinc finger protein 594 O zinc finger protein HZF18 20121230 -9606 84623 KIRREL3 UNQ5923/PRO4502/PRO19814 KIRRE|MRD4|NEPH2|PRO4502 HGNC:23204|MIM:607761|Ensembl:ENSG00000149571|HPRD:09679|Vega:OTTHUMG00000165831 11 11q24 kin of IRRE like 3 (Drosophila) protein-coding KIRREL3 kin of IRRE like 3 (Drosophila) O kin of IRRE-like protein 3|kin of irregular chiasm-like protein 3|nephrin-like 2|nephrin-like protein 2 20121230 -9606 84624 FNDC1 RP11-243O10.1 AGS8|FNDC2|MEL4B3|RP11-243O10.2|bA243O10.1|dJ322A24.1 HGNC:21184|MIM:609991|Ensembl:ENSG00000164694|HPRD:13547|Vega:OTTHUMG00000015927 6 6q25 fibronectin type III domain containing 1 protein-coding FNDC1 fibronectin type III domain containing 1 O activation-associated cDNA protein|expressed in synovial lining protein|fibronectin type III domain containing 2|fibronectin type III domain-containing protein 1 20121230 -9606 84626 KRBA1 - - HGNC:22228|Ensembl:ENSG00000133619|HPRD:11167|Vega:OTTHUMG00000157886 7 7q36 KRAB-A domain containing 1 protein-coding KRBA1 KRAB-A domain containing 1 O protein KRBA1 20121230 -9606 84627 ZNF469 - BCS HGNC:23216|MIM:612078|Ensembl:ENSG00000225614 16 16q24 zinc finger protein 469 protein-coding ZNF469 zinc finger protein 469 O - 20121230 -9606 84628 NTNG2 RP11-479K20.2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 HGNC:14288|Ensembl:ENSG00000196358|HPRD:17650|Vega:OTTHUMG00000020835 9 9q34 netrin G2 protein-coding NTNG2 netrin G2 O bA479K20.1 (novel protein)|laminet 2|laminet-2|netrin G1|netrin-G2 20121230 -9606 84629 TNRC18 hCG_96198 CAGL79|TNRC18A HGNC:11962|Ensembl:ENSG00000182095|Vega:OTTHUMG00000151831 7 7p22.1 trinucleotide repeat containing 18 protein-coding TNRC18 trinucleotide repeat containing 18 O long CAG trinucleotide repeat-containing gene 79 protein|trinucleotide repeat-containing gene 18 protein 20121230 -9606 84630 TTBK1 RP3-330M21.4 BDTK HGNC:19140|Ensembl:ENSG00000146216|HPRD:11653|Vega:OTTHUMG00000014725 6 6p21.1 tau tubulin kinase 1 protein-coding TTBK1 tau tubulin kinase 1 O brain-derived tau kinase|tau-tubulin kinase 1 20121230 -9606 84631 SLITRK2 UNQ9197/PRO34756 CXorf2|SLITL1 HGNC:13449|MIM:300561|Ensembl:ENSG00000185985|HPRD:06603|Vega:OTTHUMG00000022595 X Xq27.3 SLIT and NTRK-like family, member 2 protein-coding SLITRK2 SLIT and NTRK-like family, member 2 O SLIT and NTRK-like protein 2|slit and trk like gene 2|slit-like 1 20121230 -9606 84632 AFAP1L2 CTB-1144G6.4 KIAA1914|XB130 HGNC:25901|MIM:612420|Ensembl:ENSG00000169129|HPRD:13902|Vega:OTTHUMG00000019086 10 10q25.3 actin filament associated protein 1-like 2 protein-coding AFAP1L2 actin filament associated protein 1-like 2 O AFAP1-like protein 2|CTB-1144G6.4|actin filament-associated protein 1-like 2 20121230 -9606 84634 KISS1R - AXOR12|GPR54|HH8|HOT7T175|KISS-1R HGNC:4510|MIM:604161|Ensembl:ENSG00000116014|HPRD:09167|Vega:OTTHUMG00000181900 19 19p13.3 KISS1 receptor protein-coding KISS1R KISS1 receptor O G protein-coupled receptor 54|G-protein coupled receptor OT7T175|hypogonadotropin-1|kiSS-1 receptor|kisspeptins receptor|metastin receptor 20121230 -9606 84636 GPR174 FKSG79 - HGNC:30245|Ensembl:ENSG00000147138|HPRD:06512|Vega:OTTHUMG00000021898 X Xq21.1 G protein-coupled receptor 174 protein-coding GPR174 G protein-coupled receptor 174 O probable G-protein coupled receptor 174 20121230 -9606 84639 IL1F10 FKSG75 FIL1-theta|IL-1HY2|IL-38|IL1-theta HGNC:15552|Ensembl:ENSG00000136697|HPRD:17144|Vega:OTTHUMG00000131339 2 2q13 interleukin 1 family, member 10 (theta) protein-coding IL1F10 interleukin 1 family, member 10 (theta) O FIL1 theta|IL-1 theta|IL-1F10 (canonical form IL-1F10a)|interleukin-1 HY2|interleukin-1 family member 10|interleukin-1 receptor antagonist FKSG75|interleukin-1 receptor antagonist-like FIL1 theta 20121230 -9606 84640 USP38 - HP43.8KD HGNC:20067|Ensembl:ENSG00000170185|HPRD:15635|Vega:OTTHUMG00000161420 4 - ubiquitin specific peptidase 38 protein-coding USP38 ubiquitin specific peptidase 38 O deubiquitinating enzyme 38|ubiquitin carboxyl-terminal hydrolase 38|ubiquitin specific protease 38|ubiquitin thioesterase 38|ubiquitin thiolesterase 38|ubiquitin-specific-processing protease 38 20121230 -9606 84641 HIATL1 - - HGNC:23376|Ensembl:ENSG00000148110|HPRD:07869|Vega:OTTHUMG00000020265 9 9q22.32 hippocampus abundant transcript-like 1 protein-coding HIATL1 hippocampus abundant transcript-like 1 O hippocampus abundant transcript-like protein 1 20121230 -9606 84643 KIF2B - - HGNC:29443|Ensembl:ENSG00000141200|HPRD:10053|Vega:OTTHUMG00000177756 17 17q22 kinesin family member 2B protein-coding KIF2B kinesin family member 2B O kinesin protein|kinesin-like protein KIF2B 20121230 -9606 84645 C22orf23 AL031587.1 EVG1|dJ1039K5.6 HGNC:18589|Ensembl:ENSG00000128346|HPRD:12799|Vega:OTTHUMG00000150672 22 22q13.1 chromosome 22 open reading frame 23 protein-coding C22orf23 chromosome 22 open reading frame 23 O UPF0193 protein EVG1 20121230 -9606 84647 PLA2G12B FKSG71 GXIIB|GXIIIsPLA2|PLA2G13 HGNC:18555|MIM:611653|Ensembl:ENSG00000138308|HPRD:10155|Vega:OTTHUMG00000018446 10 10q22.1 phospholipase A2, group XIIB protein-coding PLA2G12B phospholipase A2, group XIIB O group XIIB secretory phospholipase A2-like protein|group XIII secreted phospholipase A2|group XIII secretory phospholipase A2-like protein|phospholipase A2, group XIII|sPLA2-GXIIB 20121230 -9606 84648 LCE3D - LEP16|SPRL6A|SPRL6B HGNC:16615|MIM:612616|Ensembl:ENSG00000163202|HPRD:17263|Vega:OTTHUMG00000012384 1 1q21 late cornified envelope 3D protein-coding LCE3D late cornified envelope 3D O late cornified envelope protein 3D|late envelope protein 16|small proline rich-like (epidermal differentiation complex) 6A|small proline rich-like (epidermal differentiation complex) 6B|small proline-rich-like epidermal differentiation complex protein 6A|small proline-rich-like epidermal differentiation complex protein 6B 20121230 -9606 84649 DGAT2 HMFN1045 ARAT|GS1999FULL HGNC:16940|MIM:606983|Ensembl:ENSG00000062282|HPRD:07376 11 11q13.5 diacylglycerol O-acyltransferase 2 protein-coding DGAT2 diacylglycerol O-acyltransferase 2 O acyl-CoA retinol O-fatty-acyltransferase|diacylglycerol O-acyltransferase homolog 2|diacylglycerol O-acyltransferase-like protein 2|diglyceride acyltransferase 2|retinol O-fatty-acyltransferase 20121230 -9606 84650 EBPL RP11-432M24.2 EBRP HGNC:18061|Ensembl:ENSG00000123179|HPRD:13258|Vega:OTTHUMG00000016920 13 13q12-q13 emopamil binding protein-like protein-coding EBPL emopamil binding protein-like O emopamil binding related protein, delta8-delta7 sterol isomerase related protein|emopamil-binding protein-like|emopamil-binding-related protein 20121230 -9606 84651 SPINK7 UNQ745/PRO1474 ECG2|ECRG2 HGNC:24643|Ensembl:ENSG00000145879|HPRD:16850|Vega:OTTHUMG00000163522 5 5q32 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding SPINK7 serine peptidase inhibitor, Kazal type 7 (putative) O ECRG-2|esophagus cancer related gene 2|esophagus cancer-related gene 2 protein|esophagus cancer-related gene-2|serine protease inhibitor Kazal-type 7 20121230 -9606 84654 SPZ1 - NYD-TSP1 HGNC:30721|Ensembl:ENSG00000164299|HPRD:15440|Vega:OTTHUMG00000162514 5 5q14.1 spermatogenic leucine zipper 1 protein-coding SPZ1 spermatogenic leucine zipper 1 O spermatogenic leucine zipper protein 1|spermatogenic zip 1|testis-specific protein 1 20121230 -9606 84656 GLYR1 - BM045|HIBDL|N-PAC|NP60 HGNC:24434|MIM:610660|Ensembl:ENSG00000140632|HPRD:17625|Vega:OTTHUMG00000129530 16 16p13.3 glyoxylate reductase 1 homolog (Arabidopsis) protein-coding GLYR1 glyoxylate reductase 1 homolog (Arabidopsis) O 3-hydroxyisobutyrate dehydrogenase-like protein|cytokine-like nuclear factor n-pac|nuclear protein 60 kDa|nuclear protein 60kDa|nuclear protein NP60|nuclear protein of 60 kDa|putative oxidoreductase GLYR1 20121230 -9606 84657 GHRLOS2 - C3orf42|GHRL-AS2|NAG73 HGNC:29904 3 3p25.3 ghrelin opposite strand/antisense RNA 2 (tail to tail) miscRNA GHRLOS2 ghrelin opposite strand/antisense RNA 2 (tail to tail) O - 20121230 -9606 84658 EMR3 UNQ683/PRO1562 - HGNC:23647|MIM:606101|Ensembl:ENSG00000131355|HPRD:07309 19 19p13.1 egf-like module containing, mucin-like, hormone receptor-like 3 protein-coding EMR3 egf-like module containing, mucin-like, hormone receptor-like 3 O EGF-like module receptor 3|EGF-like module-containing mucin-like hormone receptor-like 3|egf-like module-containing mucin-like receptor 3 20121230 -9606 84659 RNASE7 UNQ2516/PRO6006 - HGNC:19278|MIM:612484|Ensembl:ENSG00000165799|HPRD:17981|Vega:OTTHUMG00000171358 14 14q11.2 ribonuclease, RNase A family, 7 protein-coding RNASE7 ribonuclease, RNase A family, 7 O RNase 7|SAP-2|ribonuclease 7|skin-derived antimicrobial protein 2 20121230 -9606 84660 CCDC62 - CT109|ERAP75|TSP-NY HGNC:30723|MIM:613481|Ensembl:ENSG00000130783|HPRD:15575|Vega:OTTHUMG00000168764 12 12q24.31 coiled-coil domain containing 62 protein-coding CCDC62 coiled-coil domain containing 62 O aaa-protein|cancer/testis antigen 109|coiled-coil domain-containing protein 60|coiled-coil domain-containing protein 62|testis-specific protein TSP-NY 20121230 -9606 84661 DPY30 - HDPY-30|Saf19 HGNC:24590|MIM:612032|Ensembl:ENSG00000162961|HPRD:17434|Vega:OTTHUMG00000128457 2 2p22.3 dpy-30 homolog (C. elegans) protein-coding DPY30 dpy-30 homolog (C. elegans) O dpy-30-like protein|dpy-30L|protein dpy-30 homolog 20121230 -9606 84662 GLIS2 - NKL|NPHP7 HGNC:29450|MIM:608539|Ensembl:ENSG00000126603|HPRD:12256|Vega:OTTHUMG00000129467 16 16p13.3 GLIS family zinc finger 2 protein-coding GLIS2 GLIS family zinc finger 2 O GLI-similar 2|GLI-similar protein 2|Kruppel-like zinc finger protein GLIS2|nephrocystin-7|neuronal Krueppel-like protein|zinc finger protein GLIS2 20121230 -9606 84664 CSPG4P2Y - CSPG4LYP2|CSPG4P2|CSPG4PY2 HGNC:32424 Y Yq11.23 chondroitin sulfate proteoglycan 4 pseudogene 2, Y-linked pseudo CSPG4P2Y chondroitin sulfate proteoglycan 4 pseudogene 2, Y-linked O - 20121209 -9606 84665 MYPN - MYOP HGNC:23246|MIM:608517|Ensembl:ENSG00000138347|HPRD:10536|Vega:OTTHUMG00000018344 10 10q21.3 myopalladin protein-coding MYPN myopalladin O sarcomeric protein myopalladin, 145 kDa (MYOP) 20121230 -9606 84666 RETNLB UNQ408/PRO770 FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 HGNC:20388|MIM:605645|Ensembl:ENSG00000163515|HPRD:05734|Vega:OTTHUMG00000159393 3 3q13.1 resistin like beta protein-coding RETNLB resistin like beta O C/EBP-epsilon regulated myeloid-specific secreted cysteine-rich protein precursor 2|colon and small intestine-specific cysteine-rich protein|colon carcinoma-related gene protein|cysteine-rich secreted A12-alpha-like protein 1|cysteine-rich secreted protein A12-alpha-like 1|cysteine-rich secreted protein FIZZ2|found in inflammatory zone 1|resistin-like beta 20121230 -9606 84667 HES7 - SCDO4|bHLHb37 HGNC:15977|MIM:608059|Ensembl:ENSG00000179111|HPRD:09729|Vega:OTTHUMG00000178316 17 17p13.1 hairy and enhancer of split 7 (Drosophila) protein-coding HES7 hairy and enhancer of split 7 (Drosophila) O bHLH factor Hes7|class B basic helix-loop-helix protein 37|hHes7|transcription factor HES-7 20121230 -9606 84668 FAM126A - DRCTNNB1A|HCC|HLD5|HYCC1 HGNC:24587|MIM:610531|Ensembl:ENSG00000122591|HPRD:16837|Vega:OTTHUMG00000128435 7 7p15.3 family with sequence similarity 126, member A protein-coding FAM126A family with sequence similarity 126, member A O down regulated by Ctnnb1, a|down-regulated by CTNNB1 protein A|hyccin 20121230 -9606 84669 USP32 - NY-REN-60|USP10 HGNC:19143|MIM:607740|Ensembl:ENSG00000170832|HPRD:07612|Vega:OTTHUMG00000180001 17 17q23.3 ubiquitin specific peptidase 32 protein-coding USP32 ubiquitin specific peptidase 32 O deubiquitinating enzyme 32|renal carcinoma antigen NY-REN-60|ubiquitin carboxyl-terminal hydrolase 32|ubiquitin specific protease 32|ubiquitin thioesterase 32|ubiquitin thiolesterase 32|ubiquitin-specific-processing protease 32 20121230 -9606 84671 ZNF347 - ZNF1111 HGNC:16447|Ensembl:ENSG00000197937|HPRD:15783 19 19q13.42 zinc finger protein 347 protein-coding ZNF347 zinc finger protein 347 O zinc finger 1111|zinc finger protein 1111 20121230 -9606 84672 TTTY6 - LINC00127|NCRNA00127|TTTY6A|TTY6 HGNC:16483|MIM:400039 Y Yq11.223 testis-specific transcript, Y-linked 6 (non-protein coding) miscRNA TTTY6 testis-specific transcript, Y-linked 6 (non-protein coding) O - 20121230 -9606 84673 TTTY8 - LINC00130|NCRNA00130|TTY8 HGNC:18489 Y Yp11.2 testis-specific transcript, Y-linked 8 (non-protein coding) miscRNA TTTY8 testis-specific transcript, Y-linked 8 (non-protein coding) O - 20121209 -9606 84674 CARD6 - CINCIN1 HGNC:16394|MIM:609986|Ensembl:ENSG00000132357|HPRD:09871|Vega:OTTHUMG00000094775 5 5p13.1 caspase recruitment domain family, member 6 protein-coding CARD6 caspase recruitment domain family, member 6 O CARD-containing inhibitor of Nod1 and Cardiak-induced NF-kB activation|caspase recruitment domain protein 6|caspase recruitment domain-containing protein 6 20121230 -9606 84675 TRIM55 - MURF-2|RNF29|muRF2 HGNC:14215|MIM:606469|Ensembl:ENSG00000147573|HPRD:05927|Vega:OTTHUMG00000164473 8 8q13.1 tripartite motif containing 55 protein-coding TRIM55 tripartite motif containing 55 O muscle specific ring finger 2|muscle-specific RING finger protein 2|ring finger protein 29|tripartite motif-containing 55|tripartite motif-containing protein 55 20121230 -9606 84676 TRIM63 - IRF|MURF1|MURF2|RNF28|SMRZ HGNC:16007|MIM:606131|Ensembl:ENSG00000158022|HPRD:05843|Vega:OTTHUMG00000007510 1 1p34-p33 tripartite motif containing 63, E3 ubiquitin protein ligase protein-coding TRIM63 tripartite motif containing 63, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase TRIM63|iris ring finger protein|muscle specific ring finger protein 2|muscle-specific RING finger protein 1|ring finger protein 28|striated muscle RING zinc finger protein|tripartite motif-containing 63|tripartite motif-containing protein 63 20121230 -9606 84677 DSCR8 - C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2 HGNC:16707|MIM:613396|HPRD:10924 21 21q22.2 Down syndrome critical region gene 8 miscRNA DSCR8 Down syndrome critical region gene 8 O - 20121230 -9606 84678 KDM2B - CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 HGNC:13610|MIM:609078|Ensembl:ENSG00000089094|HPRD:12362|Vega:OTTHUMG00000169071 12 12q24.31 lysine (K)-specific demethylase 2B protein-coding KDM2B lysine (K)-specific demethylase 2B O CXXC-type zinc finger protein 2|F-box and leucine-rich repeat protein 10|F-box protein FBL10|F-box/LRR-repeat protein 10|JEMMA (Jumonji domain, EMSY-interactor, methyltransferase motif) protein|[Histone-H3]-lysine-36 demethylase 1B|jmjC domain-containing histone demethylation protein 1B|jumonji C domain-containing histone demethylase 1B|jumonji domain-containing EMSY-interactor methyltransferase motif protein|lysine-specific demethylase 2B|protein-containing CXXC domain 2 20121230 -9606 84679 SLC9A7 - NHE-7|NHE7|SLC9A6 HGNC:17123|MIM:300368|Ensembl:ENSG00000065923|HPRD:02297|Vega:OTTHUMG00000021428 X Xp11.3|Xp11.3 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 protein-coding SLC9A7 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 O Na(+)/H(+) exchanger 7|nonselective sodium potassium/proton exchanger|sodium/hydrogen exchanger 7|solute carrier family 9 (sodium/hydrogen exchanger) 20121230 -9606 84680 ACCS - ACS|PHACS HGNC:23989|MIM:608405|Ensembl:ENSG00000110455|HPRD:10524|Vega:OTTHUMG00000166427 11 11p11 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) protein-coding ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) O 1-aminocyclopropane-1-carboxylate synthase-like protein 1|ACC synthase-like protein 1 20121230 -9606 84681 HINT2 - HIT-17 HGNC:18344|MIM:609997|Ensembl:ENSG00000137133|HPRD:17106|Vega:OTTHUMG00000019886 9 9p13.3 histidine triad nucleotide binding protein 2 protein-coding HINT2 histidine triad nucleotide binding protein 2 O HINT-2|HINT-3|HIT-17kDa|PKCI-1-related HIT protein|histidine triad nucleotide-binding protein 2, mitochondrial|protein kinase C inhibitor-2 20121230 -9606 84684 INSM2 Nbla106 IA-6|IA6|mlt1 HGNC:17539|MIM:614027|Ensembl:ENSG00000168348|HPRD:17152|Vega:OTTHUMG00000140223 14 14q13.2 insulinoma-associated 2 protein-coding INSM2 insulinoma-associated 2 O insulinoma-associated protein 2|insulinoma-associated protein IA-6|zinc finger protein IA-6 20121230 -9606 84687 PPP1R9B - PPP1R6|PPP1R9|SPINO|Spn HGNC:9298|MIM:603325|HPRD:04506 17 17q21.33 protein phosphatase 1, regulatory subunit 9B protein-coding PPP1R9B protein phosphatase 1, regulatory subunit 9B O neurabin II|neurabin-2|neurabin-II|protein phosphatase 1, regulatory (inhibitor) subunit 9B|protein phosphatase 1, regulatory subunit 9B, spinophilin|spinophilin 20121230 -9606 84688 C9orf24 RP11-573M23.4 CBE1|NYD-SP22|SMRP1|bA573M23.4 HGNC:19919|Ensembl:ENSG00000164972|HPRD:12949|Vega:OTTHUMG00000000437 9 9p13.3 chromosome 9 open reading frame 24 protein-coding C9orf24 chromosome 9 open reading frame 24 O ciliated bronchial epithelial protein 1|ciliated bronchial epithelium 1|spermatid-specific manchette-related protein 1|testis development protein NYD-SP22 20121230 -9606 84689 MS4A14 - MS4A16|NYD-SP21 HGNC:30706|Ensembl:ENSG00000166928|HPRD:14863|Vega:OTTHUMG00000167357 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 14 protein-coding MS4A14 membrane-spanning 4-domains, subfamily A, member 14 O MS4A13 protein|membrane-spanning 4-domains subfamily A member 14|membrane-spanning 4-domains, subfamily A, member 16|testes development-related NYD-SP21|testis development protein NYD-SP21 20121230 -9606 84690 SPATA22 - NYD-SP20|NYDSP20 HGNC:30705|Ensembl:ENSG00000141255|Ensembl:ENSG00000262314|HPRD:14862|Vega:OTTHUMG00000177609|Vega:OTTHUMG00000177648 17 17p13.3 spermatogenesis associated 22 protein-coding SPATA22 spermatogenesis associated 22 O spermatogenesis-associated protein 22|testes development-related NYD-SP20|testis development protein NYD-SP20 20121230 -9606 84691 FAM71F1 - FAM137A|NYD-SP18 HGNC:30704|Ensembl:ENSG00000135248|HPRD:14861|Vega:OTTHUMG00000158276 7 7q32.1 family with sequence similarity 71, member F1 protein-coding FAM71F1 family with sequence similarity 71, member F1 O family with sequence similarity 137, member A|protein FAM71F1|testes development-related NYD-SP18|testis development protein NYD-SP18 20121230 -9606 84692 CCDC54 - NYD-SP17 HGNC:30703|Ensembl:ENSG00000138483|HPRD:14860|Vega:OTTHUMG00000159169 3 3q13.12 coiled-coil domain containing 54 protein-coding CCDC54 coiled-coil domain containing 54 O coiled-coil domain-containing protein 54|testes development-related NYD-SP17|testis development protein NYD-SP17 20121230 -9606 84693 MCEE - GLOD2 HGNC:16732|MIM:608419|Ensembl:ENSG00000124370|HPRD:12229|Vega:OTTHUMG00000129709 2 2p13.3 methylmalonyl CoA epimerase protein-coding MCEE methylmalonyl CoA epimerase O DL-methylmalonyl-CoA racemase|glyoxalase domain containing 2|methylmalonyl-CoA epimerase, mitochondrial 20121230 -9606 84694 GJA10 - CX62|RP11-63K6.6 HGNC:16995|MIM:611924|Ensembl:ENSG00000135355|HPRD:13104|Vega:OTTHUMG00000015210 6 6q15-q16 gap junction protein, alpha 10, 62kDa protein-coding GJA10 gap junction protein, alpha 10, 62kDa O connexin 62|connexin-62|gap junction alpha-10 protein 20121230 -9606 84695 LOXL3 - LOXL HGNC:13869|MIM:607163|Ensembl:ENSG00000115318|HPRD:06200|Vega:OTTHUMG00000129953 2 2p13 lysyl oxidase-like 3 protein-coding LOXL3 lysyl oxidase-like 3 O lysyl oxidase homolog 3|lysyl oxidase-like protein 3 20121230 -9606 84696 ABHD1 - LABH1 HGNC:17553|MIM:612195|Ensembl:ENSG00000143994|HPRD:07468|Vega:OTTHUMG00000097072 2 2p23.3 abhydrolase domain containing 1 protein-coding ABHD1 abhydrolase domain containing 1 O abhydrolase domain-containing protein 1|lung alpha/beta hydrolase 1 20121230 -9606 84698 CAPS2 UG0636c06 - HGNC:16471|MIM:607724|Ensembl:ENSG00000180881|HPRD:09659|Vega:OTTHUMG00000152787 12 12q14.1 calcyphosine 2 protein-coding CAPS2 calcyphosine 2 O calcyphosin-2|calcyphosine-2|calcyphosphine 2 20121230 -9606 84699 CREB3L3 HYST1481 CREB-H|CREBH HGNC:18855|MIM:611998|Ensembl:ENSG00000060566|HPRD:16752 19 19p13.3 cAMP responsive element binding protein 3-like 3 protein-coding CREB3L3 cAMP responsive element binding protein 3-like 3 O CREB/ATF family transcription factor|cyclic AMP-responsive element-binding protein 3-like protein 3 20121230 -9606 84700 MYO18B CTA-109D1.1 - HGNC:18150|MIM:607295|Ensembl:ENSG00000133454|HPRD:09529|Vega:OTTHUMG00000151129 22 22q12.1 myosin XVIIIB protein-coding MYO18B myosin XVIIIB O myosin 18B|myosin-XVIIIb|unconventional myosin-XVIIIb 20121230 -9606 84701 COX4I2 - COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 HGNC:16232|MIM:607976|Ensembl:ENSG00000131055|HPRD:12143|Vega:OTTHUMG00000032180 20 20q11.21 cytochrome c oxidase subunit IV isoform 2 (lung) protein-coding COX4I2 cytochrome c oxidase subunit IV isoform 2 (lung) O COX IV-2|cytochrome c oxidase subunit 4 isoform 2, mitochondrial|cytochrome c oxidase subunit IV-like 2 20121230 -9606 84705 GTPBP3 - GTPBG3|MSS1|MTGP1|THDF1 HGNC:14880|MIM:608536|Ensembl:ENSG00000130299|HPRD:12255 19 19p13.11 GTP binding protein 3 (mitochondrial) protein-coding GTPBP3 GTP binding protein 3 (mitochondrial) O mitochondrial GTP-binding protein 1|tRNA modification GTPase GTPBP3, mitochondrial 20121230 -9606 84706 GPT2 - ALT2 HGNC:18062|MIM:138210|Ensembl:ENSG00000166123|HPRD:06307|Vega:OTTHUMG00000132541 16 16q12.1 glutamic pyruvate transaminase (alanine aminotransferase) 2 protein-coding GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 O GPT 2|alanine aminotransferase 2|glutamate pyruvate transaminase 2|glutamic--alanine transaminase 2|glutamic--pyruvic transaminase 2|glutamic-pyruvate transaminase 2 20121230 -9606 84707 BEX2 RP1-79P11.1 BEX1|DJ79P11.1 HGNC:30933|MIM:300691|Ensembl:ENSG00000133134|HPRD:06484|Vega:OTTHUMG00000022095 X Xq22 brain expressed X-linked 2 protein-coding BEX2 brain expressed X-linked 2 O brain-expressed X-linked protein 2|hBex2|protein BEX2 20121230 -9606 84708 LNX1 UNQ574/PRO1136 LNX|MPDZ|PDZRN2 HGNC:6657|MIM:609732|Ensembl:ENSG00000072201|HPRD:17287|Vega:OTTHUMG00000102099 4 4q12 ligand of numb-protein X 1, E3 ubiquitin protein ligase protein-coding LNX1 ligand of numb-protein X 1, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase LNX|PDZ domain-containing ring finger protein 2|multi-PDZ-domain-containing protein, E3 ubiquitin-protein ligase LNX|numb-binding protein 1 20121230 -9606 84709 MGARP GS3582 C4orf49|CESP-1|HUMMR|OSAP HGNC:29969|Ensembl:ENSG00000137463|HPRD:17805|Vega:OTTHUMG00000161325 4 4q31.1 mitochondria-localized glutamic acid-rich protein protein-coding MGARP mitochondria-localized glutamic acid-rich protein O corneal endothelium-specific protein 1|hypoxia up-regulated mitochondrial movement regulator protein|ovary-specific acidic protein|protein MGARP 20121230 -9606 84717 HDGFRP2 UNQ785/PRO1604 HDGF2 Ensembl:ENSG00000167674|HPRD:13639|Vega:OTTHUMG00000182007 19 19p13.3 hepatoma-derived growth factor-related protein 2 protein-coding - - - HDGF-2|HRP-2|hepatoma-derived growth factor 2 20121230 -9606 84719 LINC00260 - C1orf217|NCRNA00260 HGNC:28770 1 1q32.1 long intergenic non-protein coding RNA 260 miscRNA LINC00260 long intergenic non-protein coding RNA 260 O - 20121230 -9606 84720 PIGO UNQ632/PRO1249 HPMRS2|RP11-182N22.4 HGNC:23215|MIM:614730|Ensembl:ENSG00000165282|HPRD:15134|Vega:OTTHUMG00000019854 9 9p13.3 phosphatidylinositol glycan anchor biosynthesis, class O protein-coding PIGO phosphatidylinositol glycan anchor biosynthesis, class O O GPI ethanolamine phosphate transferase 3|phosphatidylinositol-glycan biosynthesis class O protein 20121230 -9606 84722 PSRC1 RP11-297O4.2 DDA3|FP3214 HGNC:24472|MIM:613126|Ensembl:ENSG00000134222|HPRD:13127|Vega:OTTHUMG00000012000 1 1p13.3 proline/serine-rich coiled-coil 1 protein-coding PSRC1 proline/serine-rich coiled-coil 1 O differential display and activated by p53|p53-regulated DDA3|proline/serine-rich coiled-coil protein 1 20121230 -9606 84725 PLEKHA8 - FAPP2 HGNC:30037|MIM:608639|Ensembl:ENSG00000106086|HPRD:10555|Vega:OTTHUMG00000097751 7 7p21-p11.2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 protein-coding PLEKHA8 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 O PH domain-containing family A member 8|phosphatidylinositol-four-phosphate adapter protein 2|phosphoinositol 4-phosphate adapter protein 2|pleckstrin homology domain-containing family A member 8|serologically defined breast cancer antigen NY-BR-86 20121230 -9606 84726 PRRC2B RP11-334J6.1 BAT2L|BAT2L1|KIAA0515|LQFBS-1 HGNC:28121|Ensembl:ENSG00000130723|Vega:OTTHUMG00000020827 9 9q34.13 proline-rich coiled-coil 2B protein-coding PRRC2B proline-rich coiled-coil 2B O HLA-B associated transcript 2-like 1|HLA-B-associated transcript 2-like 1|proline-rich coiled-coil protein 2B|protein BAT2-like 1|protein PRRC2B 20121230 -9606 84727 SPSB2 - GRCC9|SSB2 HGNC:29522|MIM:611658|Ensembl:ENSG00000111671|HPRD:13610|Vega:OTTHUMG00000156665 12 12p13.31 splA/ryanodine receptor domain and SOCS box containing 2 protein-coding SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 O SPRY domain-containing SOCS box protein 2|SPRY domain-containing SOCS box protein SSB-2|gene-rich cluster protein C9 20121230 -9606 84733 CBX2 - CDCA6|M33|SRXY5 HGNC:1552|MIM:602770|Ensembl:ENSG00000173894|HPRD:14397|Vega:OTTHUMG00000177463 17 17q25.3 chromobox homolog 2 protein-coding CBX2 chromobox homolog 2 O Pc class homolog|cell division cycle associated 6|chromobox homolog 2 (Pc class homolog, Drosophila)|chromobox protein homolog 2|modifier 3 20121230 -9606 84734 FAM167B - C1orf90 HGNC:28133|Ensembl:ENSG00000183615|HPRD:14401|Vega:OTTHUMG00000007462 1 1p35.1 family with sequence similarity 167, member B protein-coding FAM167B family with sequence similarity 167, member B O protein FAM167B 20121230 -9606 84735 CNDP1 UNQ1915/PRO4380 CN1|CPGL2|HsT2308 HGNC:20675|MIM:609064|Ensembl:ENSG00000150656|HPRD:09883|HPRD:09894|Vega:OTTHUMG00000132852 18 18q22.3 carnosine dipeptidase 1 (metallopeptidase M20 family) protein-coding CNDP1 carnosine dipeptidase 1 (metallopeptidase M20 family) O CNDP dipeptidase 1|beta-Ala-His dipeptidase|carnosinase 1|glutamate carboxypeptidase-like protein 2|serum carnosinase 20121230 -9606 84740 AFAP1-AS1 - AFAP1-AS|AFAP1AS HGNC:28141 4 4p16.1 AFAP1 antisense RNA 1 miscRNA AFAP1-AS1 AFAP1 antisense RNA 1 O - 20121230 -9606 84747 UNC119B hCG_27366 POC7B HGNC:16488|Ensembl:ENSG00000175970|Vega:OTTHUMG00000169201 12 12q24.31 unc-119 homolog B (C. elegans) protein-coding UNC119B unc-119 homolog B (C. elegans) O POC7 centriolar protein homolog B|protein unc-119 homolog B 20121230 -9606 84749 USP30 - - HGNC:20065|MIM:612492|Ensembl:ENSG00000135093|HPRD:15633|Vega:OTTHUMG00000133613 12 12q24.11 ubiquitin specific peptidase 30 protein-coding USP30 ubiquitin specific peptidase 30 O deubiquitinating enzyme 30|ub-specific protease 30|ubiquitin carboxyl-terminal hydrolase 30|ubiquitin specific protease 30|ubiquitin thioesterase 30|ubiquitin thiolesterase 30|ubiquitin-specific protease 30|ubiquitin-specific-processing protease 30 20121230 -9606 84750 FUT10 - - HGNC:19234|Ensembl:ENSG00000172728|Vega:OTTHUMG00000163954 8 8p12 fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding FUT10 fucosyltransferase 10 (alpha (1,3) fucosyltransferase) O alpha 1,3-fucosyl transferase|alpha-(1,3)-fucosyltransferase 10|fuc-TX|fucT-X|fucosyltransferase X|galactoside 3-L-fucosyltransferase 10 20121230 -9606 84752 B3GNT9 UNQ1922/PRO4397 - HGNC:28714|Ensembl:ENSG00000237172|HPRD:14651|Vega:OTTHUMG00000173315 16 16q22.1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 protein-coding B3GNT9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 O BGnT-9|beta-1,3-Gn-T9|beta-1,3-N-acetylglucosaminyltransferase 9|beta-1,3-galactosyltransferase-related protein|beta3Gn-T9 20121230 -9606 84757 MGC10814 - - - 19 19p13.11 uncharacterized protein MGC10814 unknown - - - - 20121018 -9606 84759 PCGF1 - 2010002K04Rik|NSPC1|RNF3A-2|RNF68 HGNC:17615|MIM:610231|Ensembl:ENSG00000115289|HPRD:11404|Vega:OTTHUMG00000129954 2 2p13.1 polycomb group ring finger 1 protein-coding PCGF1 polycomb group ring finger 1 O RING finger protein 68|nervous system Polycomb-1|polycomb group RING finger protein 1 20121230 -9606 84765 ZNF577 - - HGNC:28673|Ensembl:ENSG00000161551|HPRD:15856|Vega:OTTHUMG00000157045 19 19q13.41 zinc finger protein 577 protein-coding ZNF577 zinc finger protein 577 O - 20121230 -9606 84766 EFCAB4B - CRACR2A HGNC:28657|MIM:614178|Ensembl:ENSG00000130038|HPRD:10079|Vega:OTTHUMG00000168185 12 12p13.32 EF-hand calcium binding domain 4B protein-coding EFCAB4B EF-hand calcium binding domain 4B O CRAC channel regulator 2A|EF-hand calcium-binding domain-containing protein 4B|calcium release-activated calcium channel regulator 2A 20121230 -9606 84767 TRIM51 - SPRYD5|TRIM51A HGNC:19023|Ensembl:ENSG00000124900|HPRD:10282|Vega:OTTHUMG00000156437 11 11q11 tripartite motif-containing 51 protein-coding TRIM51 tripartite motif-containing 51 O SPRY domain containing 5|SPRY domain-containing protein 5|tripartite motif-containing protein 51 20121230 -9606 84769 MPV17L2 - FKSG24 HGNC:28177|Ensembl:ENSG00000254858|HPRD:13324|Vega:OTTHUMG00000165628 19 19p13.11 MPV17 mitochondrial membrane protein-like 2 protein-coding MPV17L2 MPV17 mitochondrial membrane protein-like 2 O mpv17-like protein 2 20121230 -9606 84771 DDX11L2 RP11-395L14.8 - HGNC:37103 2 2q13 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2 pseudo DDX11L2 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2 O - 20121230 -9606 84775 ZNF607 - - HGNC:28192|Ensembl:ENSG00000198182|HPRD:18356|Vega:OTTHUMG00000182108 19 19q13.1 zinc finger protein 607 protein-coding ZNF607 zinc finger protein 607 O - 20121230 -9606 84777 DLGAP1-AS2 - - HGNC:28146 18 18p11.31 DLGAP1 antisense RNA 2 miscRNA DLGAP1-AS2 DLGAP1 antisense RNA 2 O - 20121230 -9606 84779 NAA11 - ARD1B|ARD2|hARD2 HGNC:28125|Ensembl:ENSG00000156269|Vega:OTTHUMG00000160913 4 4q21.21 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding NAA11 N(alpha)-acetyltransferase 11, NatA catalytic subunit O =N-terminal acetyltransferase complex ARD1 subunit homolog B|ARD1 homolog B|N-alpha-acetyltransferase 11|N-alpha-acetyltransferase 11, NatA catalytic subunit|N-terminal acetyltransferase complex ARD1 subunit homolog B|human arrest defective 2|natA catalytic subunit 20121230 -9606 84786 MGC12488 - - - - - uncharacterized protein MGC12488 other - - - - 20111025 -9606 84787 SUV420H2 PP7130 KMT5C HGNC:28405|MIM:613198|Ensembl:ENSG00000133247|HPRD:15454|Vega:OTTHUMG00000150483 19 19q13.42 suppressor of variegation 4-20 homolog 2 (Drosophila) protein-coding SUV420H2 suppressor of variegation 4-20 homolog 2 (Drosophila) O histone-lysine N-methyltransferase SUV420H2|lysine N-methyltransferase 5C|su(var)4-20 homolog 2|suv4-20h2 20121230 -9606 84789 MGC2889 - - - 3 3q29 uncharacterized protein MGC2889 miscRNA - - - - 20121230 -9606 84790 TUBA1C - TUBA6|bcm948 HGNC:20768|Ensembl:ENSG00000167553|HPRD:06747|Vega:OTTHUMG00000169497 12 12q13.12 tubulin, alpha 1c protein-coding TUBA1C tubulin, alpha 1c O alpha-tubulin 6|tubulin alpha-1C chain|tubulin alpha-6 chain|tubulin, alpha 6 20121230 -9606 84791 LINC00467 - C1orf97|RP11-318L16.3 HGNC:28227|HPRD:17500 1 1q32.3 long intergenic non-protein coding RNA 467 miscRNA LINC00467 long intergenic non-protein coding RNA 467 O - 20121230 -9606 84792 FAM220A - C7orf70|SIPAR HGNC:22422|Ensembl:ENSG00000178397|HPRD:14427|Vega:OTTHUMG00000122091 7 7p22.1 family with sequence similarity 220, member A protein-coding FAM220A family with sequence similarity 220, member A O STAT3-interacting protein as a repressor|protein FAM220A 20121230 -9606 84793 FOXD2-AS1 - - HGNC:44256 1 1p33 FOXD2 antisense RNA 1 (head to head) miscRNA FOXD2-AS1 FOXD2 antisense RNA 1 (head to head) O - 20121230 -9606 84795 PYROXD2 - C10orf33|FP3420 HGNC:23517|Ensembl:ENSG00000119943|HPRD:12572|Vega:OTTHUMG00000018877 10 10q24.2 pyridine nucleotide-disulphide oxidoreductase domain 2 protein-coding PYROXD2 pyridine nucleotide-disulphide oxidoreductase domain 2 O pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 20121230 -9606 84796 MGC13053 - - HPRD:14435 11 11q23.3 uncharacterized MGC13053 unknown - - - - 20121230 -9606 84798 C19orf48 - - HGNC:29667|Ensembl:ENSG00000167747|HPRD:14437 19 19q13.33 chromosome 19 open reading frame 48 protein-coding C19orf48 chromosome 19 open reading frame 48 O multidrug resistance-related protein|uncharacterized protein C19orf48 20121230 -9606 84803 AGPAT9 HMFN0839 AGPAT8|GPAT3|LPAAT-theta|MAG1 HGNC:28157|MIM:610958|Ensembl:ENSG00000138678|HPRD:14417|Vega:OTTHUMG00000130431 4 4q21.23 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding AGPAT9 1-acylglycerol-3-phosphate O-acyltransferase 9 O 1-AGP acyltransferase 9|1-AGPAT 9|1-acylglycerol-3-phosphate O-acyltransferase 8|GPAT-3|MAG-1|acyl-CoA:glycerol-3-phosphate acyltransferase 3|endoplasmic reticulum associated GPAT|glycerol-3-phosphate acyltransferase 3|hGPAT3|lung cancer metastasis-associated protein 1|lysophosphatidic acid acyltransferase theta|lysophosphatidic acid acyltransferase, theta 20121230 -9606 84804 MFSD9 PSEC0066 - HGNC:28158|Ensembl:ENSG00000135953|HPRD:14418|Vega:OTTHUMG00000130781 2 2q12.1 major facilitator superfamily domain containing 9 protein-coding MFSD9 major facilitator superfamily domain containing 9 O major facilitator superfamily domain-containing protein 9 20121230 -9606 84807 NFKBID - IkappaBNS|TA-NFKBH HGNC:15671|Ensembl:ENSG00000167604|HPRD:18140|Vega:OTTHUMG00000180760 19 19q13.12 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta protein-coding NFKBID nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta O I-kappa-B-delta|NF-kappa-B inhibitor delta|T-cell activation NFKB-like protein|ikB-delta|ikappaBdelta 20121230 -9606 84808 C1orf170 - RP11-54O7.8 HGNC:28208 1 1p36.33 chromosome 1 open reading frame 170 miscRNA C1orf170 chromosome 1 open reading frame 170 O - 20121230 -9606 84809 CROCCP2 - CROCCL1 HGNC:28170 1 1p36.13 ciliary rootlet coiled-coil, rootletin pseudogene 2 pseudo CROCCP2 ciliary rootlet coiled-coil, rootletin pseudogene 2 O - 20121230 -9606 84811 BUD13 - Cwc26|fSAP71 HGNC:28199|Ensembl:ENSG00000137656|HPRD:11307|Vega:OTTHUMG00000045136 11 11q23.3 BUD13 homolog (S. cerevisiae) protein-coding BUD13 BUD13 homolog (S. cerevisiae) O BUD13 homolog|functional spliceosome-associated protein 71 20121230 -9606 84812 PLCD4 - - HGNC:9062|MIM:605939|Ensembl:ENSG00000115556|HPRD:07296|Vega:OTTHUMG00000154743 2 2q35 phospholipase C, delta 4 protein-coding PLCD4 phospholipase C, delta 4 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4|PLC delta4|phosphoinositide phospholipase C-delta-4 20121230 -9606 84814 PPAPDC3 RP11-643E14.1 C9orf67|NET39 HGNC:28174|Ensembl:ENSG00000160539|HPRD:12972|Vega:OTTHUMG00000020822 9 9q34.13 phosphatidic acid phosphatase type 2 domain containing 3 protein-coding PPAPDC3 phosphatidic acid phosphatase type 2 domain containing 3 O phosphatidic acid phosphatase type 2 domain-containing protein 3|probable lipid phosphate phosphatase PPAPDC3 20121230 -9606 84815 MGC12916 - - - 17 17p12 uncharacterized protein MGC12916 miscRNA - - - - 20121230 -9606 84816 RTN4IP1 - NIMP HGNC:18647|MIM:610502|Ensembl:ENSG00000130347|HPRD:18008|Vega:OTTHUMG00000015304 6 6q21 reticulon 4 interacting protein 1 protein-coding RTN4IP1 reticulon 4 interacting protein 1 O NOGO-interacting mitochondrial protein|reticulon-4-interacting protein 1, mitochondrial 20121230 -9606 84817 TXNDC17 - TRP14|TXNL5 HGNC:28218|Ensembl:ENSG00000129235|HPRD:11656|Vega:OTTHUMG00000102053 17 17p13.1 thioredoxin domain containing 17 protein-coding TXNDC17 thioredoxin domain containing 17 O 14 kDa thioredoxin-related protein|protein 42-9-9|thioredoxin (Trx)-related protein, 14 kDa|thioredoxin domain-containing protein 17|thioredoxin-like 5|thioredoxin-like protein 5 20121230 -9606 84818 IL17RC UNQ6118/PRO20040/PRO38901 IL17-RL|IL17RL HGNC:18358|MIM:610925|Ensembl:ENSG00000163702|HPRD:17142|Vega:OTTHUMG00000128648 3 3p25.3|3p25.3-p24.1 interleukin 17 receptor C protein-coding IL17RC interleukin 17 receptor C O IL-17 receptor C|IL-17RL|IL17F receptor|IL17Rhom|interleukin-17 receptor C|interleukin-17 receptor homolog|interleukin-17 receptor-like protein|zcytoR14 20121230 -9606 84820 POLR2J4 - RPB11-phi HGNC:28195 7 7p13 polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene pseudo POLR2J4 polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene O - 20121230 -9606 84823 LMNB2 - LAMB2|LMN2 HGNC:6638|MIM:150341|Ensembl:ENSG00000176619|HPRD:01037|Vega:OTTHUMG00000150626 19 19p13.3 lamin B2 protein-coding LMNB2 lamin B2 O lamin-B2 20121230 -9606 84824 FCRLA RP11-474I16.5 FCRL|FCRL1|FCRLM1|FCRLX|FCRLb|FCRLc1|FCRLc2|FCRLd|FCRLe|FCRX|FREB HGNC:18504|MIM:606891|Ensembl:ENSG00000132185|Vega:OTTHUMG00000034537 1 1q23.3 Fc receptor-like A protein-coding FCRLA Fc receptor-like A O Fc receptor homolog expressed in B cells (FREB)|Fc receptor related protein X|Fc receptor-like and mucin-like 1|fc receptor homolog expressed in B-cells|fc receptor-like and mucin-like protein 1|fc receptor-like protein|fc receptor-related protein X 20121230 -9606 84826 SFT2D3 - - HGNC:28767|Ensembl:ENSG00000173349|HPRD:14683|Vega:OTTHUMG00000131532 2 2q14.3 SFT2 domain containing 3 protein-coding SFT2D3 SFT2 domain containing 3 O SFT2 domain-containing protein 3|vesicle transport protein SFT2C 20121230 -9606 84830 ADTRP RP3-413H6.1 AIG1L|C6orf105|dJ413H6.1 HGNC:21214|MIM:614348|Ensembl:ENSG00000111863|HPRD:12836|Vega:OTTHUMG00000014260 6 6p24.1 androgen-dependent TFPI-regulating protein protein-coding ADTRP androgen-dependent TFPI-regulating protein O androgen-dependent TPF1-regulating protein 20121230 -9606 84832 ANKRD36BP1 RP4-747L4.3 ANKRD26L1|ANKRD36BL1 HGNC:28169 1 1q24.2 ankyrin repeat domain 36B pseudogene 1 pseudo ANKRD36BP1 ankyrin repeat domain 36B pseudogene 1 O - 20121230 -9606 84833 USMG5 PD04912 DAPIT|HCVFTP2|bA792D24.4 HGNC:30889|Ensembl:ENSG00000173915|HPRD:18277|Vega:OTTHUMG00000018984 10 10q24.33 up-regulated during skeletal muscle growth 5 homolog (mouse) protein-coding USMG5 up-regulated during skeletal muscle growth 5 homolog (mouse) O HCV F-transactivated protein 2|diabetes-associated protein in insulin-sensitive tissues|up-regulated during skeletal muscle growth protein 5|upregulated during skeletal muscle growth 5 homolog 20121230 -9606 84836 ABHD14B - CIB HGNC:28235|Ensembl:ENSG00000114779|HPRD:17504|Vega:OTTHUMG00000157816 3 3p21.2 abhydrolase domain containing 14B protein-coding ABHD14B abhydrolase domain containing 14B O CCG1-interacting factor B|abhydrolase domain-containing protein 14B|cell cycle gene 1-interacting factor B 20121230 -9606 84837 ARHGAP5-AS1 - C14orf128 HGNC:20279 14 14q12 ARHGAP5 antisense RNA 1 (head to head) miscRNA ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head) O - 20121230 -9606 84838 ZNF496 - NIZP1|ZFP496|ZKSCAN17 HGNC:23713|MIM:613911|Ensembl:ENSG00000162714|HPRD:15805|Vega:OTTHUMG00000041164 1 1q44 zinc finger protein 496 protein-coding ZNF496 zinc finger protein 496 O NSD1 (nuclear receptor binding SET-domain containing 1)-interacting zinc finger protein 1|zinc finger protein with KRAB and SCAN domains 17 20121230 -9606 84839 RAX2 - ARMD6|CORD11|QRX|RAXL1 HGNC:18286|MIM:610362|Ensembl:ENSG00000173976|HPRD:17508|Vega:OTTHUMG00000171148 19 19p13.3 retina and anterior neural fold homeobox 2 protein-coding RAX2 retina and anterior neural fold homeobox 2 O Q50-type retinal homeobox protein|retina and anterior neural fold homeobox like 1|retina and anterior neural fold homeobox protein 2|retina and anterior neural fold homeobox-like protein 1 20121230 -9606 84842 HPDL - 4-HPPD-L|GLOXD1|RP4-534D1.1 HGNC:28242|Ensembl:ENSG00000186603|HPRD:17509|Vega:OTTHUMG00000007681 1 1p34.1 4-hydroxyphenylpyruvate dioxygenase-like protein-coding HPDL 4-hydroxyphenylpyruvate dioxygenase-like O 4-hydroxyphenylpyruvate dioxygenase-like protein|glyoxalase domain containing 1|glyoxalase domain-containing protein 1 20121230 -9606 84843 MGC15705 - - - 22 22q12.2 uncharacterized protein MGC15705 unknown - - - - 20121230 -9606 84844 PHF5A - INI|Rds3|SAP14b|SF3b14b|bK223H9.2 HGNC:18000|Ensembl:ENSG00000100410|HPRD:15126|Vega:OTTHUMG00000150966 22 22q13.2 PHD finger protein 5A protein-coding PHF5A PHD finger protein 5A O PHD finger-like domain protein 5A|PHD finger-like domain-containing protein 5A|PHD-finger 5a|splicing factor 3B associated 14 kDa protein|splicing factor 3B-associated 14 kDa protein 20121230 -9606 84847 LINC00525 tcag7.1266 - HGNC:40290 7 7p12.3 long intergenic non-protein coding RNA 525 miscRNA LINC00525 long intergenic non-protein coding RNA 525 O - 20121230 -9606 84848 MGC16121 - - HPRD:06638 X Xq26.3 uncharacterized protein MGC16121 miscRNA - - - - 20121230 -9606 84849 MGC16142 - - - 7 7q21.2 uncharacterized protein MGC16142 miscRNA - - - - 20121230 -9606 84850 GLIS3-AS1 - C9orf70 HGNC:28260 9 9p24.2 GLIS3 antisense RNA 1 miscRNA GLIS3-AS1 GLIS3 antisense RNA 1 O - 20121230 -9606 84851 TRIM52 - RNF102 HGNC:19024|Ensembl:ENSG00000183718|HPRD:10283|Vega:OTTHUMG00000130964 5 5q35.3 tripartite motif containing 52 protein-coding TRIM52 tripartite motif containing 52 O RING finger protein 102|tripartite motif-containing 52|tripartite motif-containing protein 52 20121230 -9606 84852 ATP1A1OS RP4-655J12.2 C1orf203 HGNC:28262 1 1p13.1 ATP1A1 opposite strand miscRNA ATP1A1OS ATP1A1 opposite strand O - 20121230 -9606 84856 LINC00839 - - HGNC:28269|HPRD:17516 10 10q11.21 long intergenic non-protein coding RNA 839 miscRNA LINC00839 long intergenic non-protein coding RNA 839 O - 20121230 -9606 84858 ZNF503 - NOLZ-1|NOLZ1 HGNC:23589|MIM:613902|Ensembl:ENSG00000165655|HPRD:15811|Vega:OTTHUMG00000018526 10 10q22.2 zinc finger protein 503 protein-coding ZNF503 zinc finger protein 503 O - 20121230 -9606 84859 LRCH3 - - HGNC:28637|Ensembl:ENSG00000186001|HPRD:14308|Vega:OTTHUMG00000155378 3 3q29 leucine-rich repeats and calponin homology (CH) domain containing 3 protein-coding LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 O leucine-rich repeat and calponin homology domain-containing protein 3 20121230 -9606 84861 KLHL22 - KELCHL HGNC:25888|Ensembl:ENSG00000099910|HPRD:07858|Vega:OTTHUMG00000150778 22 22q11.21 kelch-like 22 (Drosophila) protein-coding KLHL22 kelch-like 22 (Drosophila) O kelch-like protein 22 20121230 -9606 84864 MINA - MDIG|MINA53|NO52 HGNC:19441|MIM:612049|Ensembl:ENSG00000170854|HPRD:17575|Vega:OTTHUMG00000160107 3 3q11.2 MYC induced nuclear antigen protein-coding MINA MYC induced nuclear antigen O MYC-induced nuclear antigen|mineral dust induced gene protein|mineral dust-induced gene protein|myc-induced nuclear antigen, 53 kDa|nucleolar protein 52 20121230 -9606 84865 CCDC142 PSEC0243 - HGNC:25889|Ensembl:ENSG00000135637|HPRD:08598|Vega:OTTHUMG00000129962 2 2p13.1 coiled-coil domain containing 142 protein-coding CCDC142 coiled-coil domain containing 142 O coiled-coil domain-containing protein 142 20121230 -9606 84866 TMEM25 UNQ2531/PRO6030 - HGNC:25890|MIM:613934|Ensembl:ENSG00000149582|HPRD:11635|Vega:OTTHUMG00000166339 11 11q23.3 transmembrane protein 25 protein-coding TMEM25 transmembrane protein 25 O 0610039J01Rik 20121230 -9606 84867 PTPN5 - PTPSTEP|STEP HGNC:9657|MIM:176879|Ensembl:ENSG00000110786|HPRD:01472|Vega:OTTHUMG00000134304 11 11p15.1 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) protein-coding PTPN5 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) O neural-specific protein-tyrosine phosphatase|protein-tyrosine phosphatase striatum-enriched|striatum-enriched protein-tyrosine phosphatase|tyrosine-protein phosphatase non-receptor type 5 20121230 -9606 84868 HAVCR2 - HAVcr-2|KIM-3|TIM3|TIMD-3|TIMD3|Tim-3 HGNC:18437|MIM:606652|Ensembl:ENSG00000135077|HPRD:16227|Vega:OTTHUMG00000130249 5 5q33.3 hepatitis A virus cellular receptor 2 protein-coding HAVCR2 hepatitis A virus cellular receptor 2 O T cell immunoglobulin mucin 3|T cell immunoglobulin mucin-3|T-cell immunoglobulin and mucin domain-containing protein 3|T-cell membrane protein 3|kidney injury molecule-3 20121230 -9606 84869 CBR4 - SDR45C1 HGNC:25891|Ensembl:ENSG00000145439|HPRD:07859|Vega:OTTHUMG00000161025 4 4q32.3 carbonyl reductase 4 protein-coding CBR4 carbonyl reductase 4 O 3-oxoacyl-[acyl-carrier-protein] reductase|carbonic reductase 4|carbonyl reductase family member 4|quinone reductase CBR4|short chain dehydrogenase/reductase family 45C, member 1 20121230 -9606 84870 RSPO3 - CRISTIN1|PWTSR|THSD2 HGNC:20866|MIM:610574|Ensembl:ENSG00000146374|HPRD:18181|Vega:OTTHUMG00000015521 6 6q22.33 R-spondin 3 protein-coding RSPO3 R-spondin 3 O R-spondin 3 homolog|R-spondin-3|protein with TSP type-1 repeat|roof plate-specific spondin-3|thrombospondin type-1 domain-containing protein 2|thrombospondin, type I, domain containing 2 20121230 -9606 84871 AGBL4 RP11-342A17.1 CCP6 HGNC:25892|Ensembl:ENSG00000186094|HPRD:07487|Vega:OTTHUMG00000007793 1 1p33 ATP/GTP binding protein-like 4 protein-coding AGBL4 ATP/GTP binding protein-like 4 O ATP/GTP-binding protein-like 4|cytosolic carboxypeptidase 6 20121230 -9606 84872 ZC3H10 - ZC3HDC10 HGNC:25893|Ensembl:ENSG00000135482|HPRD:07860|Vega:OTTHUMG00000170184 12 12q13.2 zinc finger CCCH-type containing 10 protein-coding ZC3H10 zinc finger CCCH-type containing 10 O zinc finger CCCH domain-containing protein 10|zinc finger CCCH-type domain containing 10 20121230 -9606 84873 GPR128 - - HGNC:19241|MIM:612307|Ensembl:ENSG00000144820|HPRD:17060|Vega:OTTHUMG00000159083 3 3q12.2 G protein-coupled receptor 128 protein-coding GPR128 G protein-coupled receptor 128 O probable G-protein coupled receptor 128 20121230 -9606 84874 ZNF514 - - HGNC:25894|Ensembl:ENSG00000144026|HPRD:15814|Vega:OTTHUMG00000130391 2 2q11.1 zinc finger protein 514 protein-coding ZNF514 zinc finger protein 514 O - 20121230 -9606 84875 PARP10 - ARTD10 HGNC:25895|MIM:609564|Ensembl:ENSG00000178685|HPRD:15100|Vega:OTTHUMG00000165408 8 8q24.3 poly (ADP-ribose) polymerase family, member 10 protein-coding PARP10 poly (ADP-ribose) polymerase family, member 10 O ADP-ribosyltransferase diphtheria toxin-like 10|PARP-10|poly [ADP-ribose] polymerase 10 20121230 -9606 84876 ORAI1 - CRACM1|ORAT1|TMEM142A HGNC:25896|MIM:610277|Ensembl:ENSG00000182500|HPRD:08599|Vega:OTTHUMG00000169073 12 12q24.31 ORAI calcium release-activated calcium modulator 1 protein-coding ORAI1 ORAI calcium release-activated calcium modulator 1 O calcium release-activated calcium channel protein 1|calcium release-activated calcium modulator 1|protein orai-1|transmembrane protein 142A 20121230 -9606 84878 ZBTB45 - ZNF499 HGNC:23715|Ensembl:ENSG00000119574|HPRD:15808 19 19q13.43 zinc finger and BTB domain containing 45 protein-coding ZBTB45 zinc finger and BTB domain containing 45 O zinc finger and BTB domain-containing protein 45|zinc finger protein 499 20121230 -9606 84879 MFSD2A HMFN0656 MFSD2 HGNC:25897|MIM:614397|Ensembl:ENSG00000168389|HPRD:07861|Vega:OTTHUMG00000009293 1 1p34.2 major facilitator superfamily domain containing 2A protein-coding MFSD2A major facilitator superfamily domain containing 2A O major facilitator superfamily domain containing 2|major facilitator superfamily domain-containing protein 2A 20121230 -9606 84881 RPUSD4 - - HGNC:25898|Ensembl:ENSG00000165526|HPRD:07862|Vega:OTTHUMG00000165815 11 11q24.2 RNA pseudouridylate synthase domain containing 4 protein-coding RPUSD4 RNA pseudouridylate synthase domain containing 4 O RNA pseudouridylate synthase domain-containing protein 4 20121230 -9606 84883 AIFM2 - AMID|PRG3|RP11-367H5.2 HGNC:21411|MIM:605159|Ensembl:ENSG00000042286|HPRD:09797|Vega:OTTHUMG00000018398 10 10q22.1 apoptosis-inducing factor, mitochondrion-associated, 2 protein-coding AIFM2 apoptosis-inducing factor, mitochondrion-associated, 2 O apoptosis-inducing factor (AIF)-homologous mitochondrion-associated inducer of death|apoptosis-inducing factor (AIF)-like mitochondrion-associated inducer of death|apoptosis-inducing factor 2|p53-responsive gene 3 protein 20121230 -9606 84885 ZDHHC12 RP11-545E17.12-002 ZNF400 HGNC:19159|Ensembl:ENSG00000160446|HPRD:15709|Vega:OTTHUMG00000020756 9 9q34.11 zinc finger, DHHC-type containing 12 protein-coding ZDHHC12 zinc finger, DHHC-type containing 12 O DHHC-12|probable palmitoyltransferase ZDHHC12|zinc finger DHHC domain-containing protein 12|zinc finger protein 400|zinc finger, DHHC domain containing 12 20121230 -9606 84886 C1orf198 - - HGNC:25900|Ensembl:ENSG00000119280|HPRD:13359|Vega:OTTHUMG00000037790 1 1q42.2 chromosome 1 open reading frame 198 protein-coding C1orf198 chromosome 1 open reading frame 198 O uncharacterized protein C1orf198 20121230 -9606 84888 SPPL2A PSEC0147 IMP3|PSL2 HGNC:30227|MIM:608238|Ensembl:ENSG00000138600|HPRD:09742|Vega:OTTHUMG00000131647 15 15q21.2 signal peptide peptidase like 2A protein-coding SPPL2A signal peptide peptidase like 2A O IMP-3|SPP-like 2A|intramembrane cleaving protease|intramembrane protease 3|presenilin-like protein 2|signal peptide peptidase-like 2A 20121230 -9606 84889 SLC7A3 - ATRC3|CAT-3|CAT3 HGNC:11061|MIM:300443|Ensembl:ENSG00000165349|HPRD:02343|Vega:OTTHUMG00000021780 X Xq13.1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 protein-coding SLC7A3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 O cationic amino acid transporter 3 20121230 -9606 84890 ADO - C10orf22 HGNC:23506|MIM:611392|Ensembl:ENSG00000181915|HPRD:12566|Vega:OTTHUMG00000018306 10 10q21.3 2-aminoethanethiol (cysteamine) dioxygenase protein-coding ADO 2-aminoethanethiol (cysteamine) dioxygenase O 2-aminoethanethiol dioxygenase|cysteamine (2-aminoethanethiol) dioxygenase (ADO)|cysteamine dioxygenase 20121230 -9606 84891 ZSCAN10 - ZNF206 HGNC:12997|Ensembl:ENSG00000130182|HPRD:15747|Vega:OTTHUMG00000177478 16 16p13.3 zinc finger and SCAN domain containing 10 protein-coding ZSCAN10 zinc finger and SCAN domain containing 10 O zinc finger and SCAN domain-containing protein 10|zinc finger protein 206 20121230 -9606 84892 GTDC2 - AGO61|C3orf39|MDDGA8 HGNC:25902|MIM:614828|Ensembl:ENSG00000144647|HPRD:07863|Vega:OTTHUMG00000133038 3 3p22.1 glycosyltransferase-like domain containing 2 protein-coding GTDC2 glycosyltransferase-like domain containing 2 O glycosyltransferase-like domain-containing protein 2 20121230 -9606 84893 FBXO18 RP11-536K7.6 FBH1|Fbx18 HGNC:13620|MIM:607222|Ensembl:ENSG00000134452|HPRD:06243|Vega:OTTHUMG00000017609 10 10p15.1 F-box protein, helicase, 18 protein-coding FBXO18 F-box protein, helicase, 18 O F-box DNA helicase 1|F-box only protein 18|F-box only protein, helicase, 18 20121230 -9606 84894 LINGO1 - LERN1|LRRN6A|UNQ201 HGNC:21205|MIM:609791|Ensembl:ENSG00000169783|HPRD:14322|Vega:OTTHUMG00000172629 15 15q24.3 leucine rich repeat and Ig domain containing 1 protein-coding LINGO1 leucine rich repeat and Ig domain containing 1 O leucine rich repeat neuronal 6A|leucine-rich repeat and immunoglobilin domain-containing protein 1|leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1|leucine-rich repeat neuronal protein 1|leucine-rich repeat neuronal protein 6A 20121230 -9606 84895 FAM73B RP11-167N5.1 C9orf54 HGNC:23621|Ensembl:ENSG00000148343|HPRD:12965|Vega:OTTHUMG00000020770 9 9q34.11 family with sequence similarity 73, member B protein-coding FAM73B family with sequence similarity 73, member B O protein FAM73B 20121230 -9606 84896 ATAD1 FNP001 AFDC1|THORASE HGNC:25903|MIM:614452|Ensembl:ENSG00000138138|HPRD:12499|Vega:OTTHUMG00000018685 10 10q23.31 ATPase family, AAA domain containing 1 protein-coding ATAD1 ATPase family, AAA domain containing 1 O ATPase family AAA domain-containing protein 1 20121230 -9606 84897 TBRG1 - NIAM|TB-5 HGNC:29551|MIM:610614|Ensembl:ENSG00000154144|HPRD:15477|Vega:OTTHUMG00000153024 11 11q24.2 transforming growth factor beta regulator 1 protein-coding TBRG1 transforming growth factor beta regulator 1 O nuclear interactor of ARF and MDM2 20121230 -9606 84898 PLXDC2 UNQ2514/PRO6003 TEM7R HGNC:21013|MIM:606827|Ensembl:ENSG00000120594|HPRD:08440|Vega:OTTHUMG00000017781 10 10p12.31 plexin domain containing 2 protein-coding PLXDC2 plexin domain containing 2 O 1200007L24Rik|plexin domain-containing protein 2|tumor endothelial marker 7-related protein 20121230 -9606 84899 TMTC4 RP11-113J24.1 - HGNC:25904|Ensembl:ENSG00000125247|HPRD:07864|Vega:OTTHUMG00000017289 13 13q32.3 transmembrane and tetratricopeptide repeat containing 4 protein-coding TMTC4 transmembrane and tetratricopeptide repeat containing 4 O transmembrane and TPR repeat-containing protein 4 20121230 -9606 84900 RNFT2 UNQ514 TMEM118 HGNC:25905|Ensembl:ENSG00000135119|HPRD:08600|Vega:OTTHUMG00000150882 12 12q24.22 ring finger protein, transmembrane 2 protein-coding RNFT2 ring finger protein, transmembrane 2 O RING finger and transmembrane domain-containing protein 2|transmembrane protein 118 20121230 -9606 84901 NFATC2IP - ESC2|NIP45|RAD60 HGNC:25906|MIM:614525|Ensembl:ENSG00000176953|HPRD:10971|Vega:OTTHUMG00000097763 16 16p11.2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein protein-coding NFATC2IP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein O 45 kDa NF-AT-interacting protein|45 kDa NFAT-interacting protein|NFATC2-interacting protein|nuclear factor of activated T-cells, cytoplasmic 2-interacting protein 20121230 -9606 84902 CEP89 - CCDC123 HGNC:25907|Ensembl:ENSG00000121289|HPRD:08601|Vega:OTTHUMG00000180424 19 19q13.11 centrosomal protein 89kDa protein-coding CEP89 centrosomal protein 89kDa O centrosomal protein of 89 kDa|coiled-coil domain containing 123|coiled-coil domain-containing protein 123, mitochondrial 20121230 -9606 84904 ARHGEF39 - C9orf100|RP11-331F9.7 HGNC:25909|Ensembl:ENSG00000137135|HPRD:12929|Vega:OTTHUMG00000019869 9 9p13.3 Rho guanine nucleotide exchange factor (GEF) 39 protein-coding ARHGEF39 Rho guanine nucleotide exchange factor (GEF) 39 O rho guanine nucleotide exchange factor 39|vav-like protein C9orf100 20121230 -9606 84905 ZNF341 RP4-553F4.1 - HGNC:15992|Ensembl:ENSG00000131061|HPRD:15781|Vega:OTTHUMG00000032275 20 20q11.22 zinc finger protein 341 protein-coding ZNF341 zinc finger protein 341 O - 20121230 -9606 84908 FAM136A - - HGNC:25911|Ensembl:ENSG00000035141|HPRD:07866|Vega:OTTHUMG00000129668 2 2p13.3 family with sequence similarity 136, member A protein-coding FAM136A family with sequence similarity 136, member A O protein FAM136A 20121230 -9606 84909 C9orf3 RP11-80I15.5 AOPEP|AP-O|APO|C90RF3|ONPEP HGNC:1361|Ensembl:ENSG00000148120|HPRD:07476|Vega:OTTHUMG00000020276 9 9q22.32 chromosome 9 open reading frame 3 protein-coding C9orf3 chromosome 9 open reading frame 3 O aminopeptidase O 20121230 -9606 84910 TMEM87B - - HGNC:25913|Ensembl:ENSG00000153214|HPRD:07867|Vega:OTTHUMG00000153266 2 2q13 transmembrane protein 87B protein-coding TMEM87B transmembrane protein 87B O - 20121230 -9606 84911 ZNF382 - KS1 HGNC:17409|MIM:609516|Ensembl:ENSG00000161298|HPRD:18331|Vega:OTTHUMG00000048153 19 19q13.12 zinc finger protein 382 protein-coding ZNF382 zinc finger protein 382 O KRAB/zinc finger suppressor protein 1|multiple zinc finger and krueppel-associated box protein KS1 20121230 -9606 84912 SLC35B4 PSEC0055 YEA|YEA4 HGNC:20584|MIM:610923|Ensembl:ENSG00000205060|HPRD:11578|Vega:OTTHUMG00000155321 7 7q33 solute carrier family 35, member B4 protein-coding SLC35B4 solute carrier family 35, member B4 O UDP-Xylose/N-Acetylglucosamine transporter|UDP-xylose and UDP-N-acetylglucosamine transporter|YEA4 homolog 20121230 -9606 84913 ATOH8 - HATH6|bHLHa21 HGNC:24126|Ensembl:ENSG00000168874|HPRD:09813|Vega:OTTHUMG00000130178 2 2p11.2 atonal homolog 8 (Drosophila) protein-coding ATOH8 atonal homolog 8 (Drosophila) O atonal homolog 6|basic helix loop helix transcription factor 6|basic helix-loop-helix transcription factor 6|class A basic helix-loop-helix protein 21|helix-loop-helix protein hATH-6|protein atonal homolog 8 20121230 -9606 84914 ZNF587 - ZF6 HGNC:30955|Ensembl:ENSG00000198466|HPRD:15864|Vega:OTTHUMG00000154901 19 19q13.43 zinc finger protein 587 protein-coding ZNF587 zinc finger protein 587 O zinc finger protein zfp6 20121230 -9606 84915 FAM222A - C12orf34 HGNC:25915|Ensembl:ENSG00000139438|HPRD:07868|Vega:OTTHUMG00000169260 12 12q24.11 family with sequence similarity 222, member A protein-coding FAM222A family with sequence similarity 222, member A O protein FAM222A|uncharacterized protein C12orf34 20121230 -9606 84916 CIRH1A - CIRHIN|NAIC|TEX292|UTP4 HGNC:1983|MIM:607456|Ensembl:ENSG00000141076|HPRD:08468|Vega:OTTHUMG00000137570 16 16q22.1 cirrhosis, autosomal recessive 1A (cirhin) protein-coding CIRH1A cirrhosis, autosomal recessive 1A (cirhin) O UTP4, small subunit (SSU) processome component, homolog|cirhin|testis expressed gene 292 20121230 -9606 84918 LRP11 RP11-350J20.11-002 MANSC3|bA350J20.3 HGNC:16936|Ensembl:ENSG00000120256|HPRD:17446|Vega:OTTHUMG00000015801 6 6q25.1 low density lipoprotein receptor-related protein 11 protein-coding LRP11 low density lipoprotein receptor-related protein 11 O LRP-11|low-density lipoprotein receptor-related protein 11 20121230 -9606 84919 PPP1R15B - CREP HGNC:14951|MIM:613257|Ensembl:ENSG00000158615|HPRD:17892|Vega:OTTHUMG00000036105 1 1q32.1 protein phosphatase 1, regulatory subunit 15B protein-coding PPP1R15B protein phosphatase 1, regulatory subunit 15B O protein phosphatase 1 regulatory subunit 15B|protein phosphatase 1, regulatory (inhibitor) subunit 15B 20121230 -9606 84920 ALG10 - DIE2|KCR1 HGNC:23162|MIM:603313|Ensembl:ENSG00000139133|Vega:OTTHUMG00000169285 12 12p11.1 asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe) protein-coding ALG10 asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe) O alpha-1,2-glucosyltransferase ALG10-A|alpha-2-glucosyltransferase ALG10-A|alpha2-glucosyltransferase|asparagine-linked glycosylation 10 homolog (yeast, alpha-1,2-glucosyltransferase)|asparagine-linked glycosylation protein 10 homolog A|derepression of ITR1 expression 2 homolog|dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase|potassium channel regulator 1 20121230 -9606 84922 FIZ1 - ZNF798 HGNC:25917|MIM:609133|Ensembl:ENSG00000179943|HPRD:07870|Vega:OTTHUMG00000180858 19 19q13.42 FLT3-interacting zinc finger 1 protein-coding FIZ1 FLT3-interacting zinc finger 1 O flt3-interacting zinc finger protein 1|zinc finger protein 798 20121230 -9606 84923 FAM104A - - HGNC:25918|Ensembl:ENSG00000133193|HPRD:08602|Vega:OTTHUMG00000150564 17 17q25.1 family with sequence similarity 104, member A protein-coding FAM104A family with sequence similarity 104, member A O protein FAM104A 20121230 -9606 84924 ZNF566 - - HGNC:25919|Ensembl:ENSG00000186017|HPRD:15847|Vega:OTTHUMG00000048148 19 19q13.12 zinc finger protein 566 protein-coding ZNF566 zinc finger protein 566 O - 20121230 -9606 84925 DIRC2 - RCC4 HGNC:16628|MIM:602773|Ensembl:ENSG00000138463|HPRD:04142|Vega:OTTHUMG00000159553 3 3q21.1 disrupted in renal carcinoma 2 protein-coding DIRC2 disrupted in renal carcinoma 2 O disrupted in renal cancer protein 2|disrupted in renal carcinoma protein 2|renal cell carcinoma 4 20121230 -9606 84926 SPRYD3 - - HGNC:25920|Ensembl:ENSG00000167778|HPRD:08603|Vega:OTTHUMG00000170101 12 12q13.13 SPRY domain containing 3 protein-coding SPRYD3 SPRY domain containing 3 O SPRY domain-containing protein 3 20121230 -9606 84928 TMEM209 - NET31 HGNC:21898|Ensembl:ENSG00000146842|HPRD:07871|Vega:OTTHUMG00000157653 7 7q32.2 transmembrane protein 209 protein-coding TMEM209 transmembrane protein 209 O - 20121230 -9606 84929 FIBCD1 RP11-83J21.2 - HGNC:25922|MIM:613357|Ensembl:ENSG00000130720|HPRD:16895|Vega:OTTHUMG00000020814 9 9q34.12 fibrinogen C domain containing 1 protein-coding FIBCD1 fibrinogen C domain containing 1 O fibrinogen C domain-containing protein 1 20121230 -9606 84930 MASTL - GREATWALL|GW|GWL|MAST-L|RP11-85G18.2|THC2|hGWL HGNC:19042|MIM:608221|Ensembl:ENSG00000120539|HPRD:10499|Vega:OTTHUMG00000017855 10 10p12.1 microtubule associated serine/threonine kinase-like protein-coding MASTL microtubule associated serine/threonine kinase-like O greatwall protein kinase|microtubule-associated serine/threonine-protein kinase-like|serine/threonine-protein kinase greatwall 20121230 -9606 84931 LOC84931 - - HPRD:08604 2 2q14.2 uncharacterized LOC84931 miscRNA - - - - 20121230 -9606 84932 RAB2B - - HGNC:20246|MIM:607466|Ensembl:ENSG00000129472|HPRD:06312|Vega:OTTHUMG00000029693 14 14q11.2 RAB2B, member RAS oncogene family protein-coding RAB2B RAB2B, member RAS oncogene family O GTP-binding protein RAB2B|RAS family, member RAB2B|ras-related protein Rab-2B 20121230 -9606 84933 C8orf76 - - HGNC:25924|Ensembl:ENSG00000189376|HPRD:08605|Vega:OTTHUMG00000165087|Vega:OTTHUMG00000172562 8 8q24.13 chromosome 8 open reading frame 76 protein-coding C8orf76 chromosome 8 open reading frame 76 O uncharacterized protein C8orf76 20121230 -9606 84934 C12orf52 PSEC0043 RITA HGNC:25925|Ensembl:ENSG00000139405|HPRD:08606|Vega:OTTHUMG00000169643 12 12q24.13 chromosome 12 open reading frame 52 protein-coding C12orf52 chromosome 12 open reading frame 52 O RBP-J interacting and tubulin associated|RBPJ-interacting and tubulin-associated protein 20121230 -9606 84935 MEDAG RP11-252M21.2 AWMS3|C13orf33|MEDA-4|MEDA4|hAWMS3 HGNC:25926|Ensembl:ENSG00000102802|HPRD:07872|Vega:OTTHUMG00000016679 13 13q12.3 mesenteric estrogen-dependent adipogenesis protein-coding MEDAG mesenteric estrogen-dependent adipogenesis O activated in W/Wv mouse stomach 3 homolog|mesenteric estrogen-dependent adipose 4|uncharacterized protein C13orf33 20121230 -9606 84936 ZFYVE19 - MPFYVE HGNC:20758|Ensembl:ENSG00000166140|HPRD:15731|Vega:OTTHUMG00000172537 15 15q15.1 zinc finger, FYVE domain containing 19 protein-coding ZFYVE19 zinc finger, FYVE domain containing 19 O MLL partner containing FYVE domain|zinc finger FYVE domain-containing protein 19 20121230 -9606 84937 ZNRF1 - NIN283 HGNC:18452|MIM:612060|Ensembl:ENSG00000186187|HPRD:15893|Vega:OTTHUMG00000137606 16 16q23.1 zinc and ring finger 1, E3 ubiquitin protein ligase protein-coding ZNRF1 zinc and ring finger 1, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase ZNRF1|nerve injury gene 283|nerve injury-induced gene 283 protein|zinc and ring finger protein 1|zinc/RING finger protein 1 20121230 -9606 84938 ATG4C - APG4-C|APG4C|AUTL1|AUTL3 HGNC:16040|MIM:611339|Ensembl:ENSG00000125703|HPRD:07473|Vega:OTTHUMG00000009142 1 1p31.3 autophagy related 4C, cysteine peptidase protein-coding ATG4C autophagy related 4C, cysteine peptidase O APG4 autophagy 4 homolog C|ATG4 autophagy related 4 homolog C|AUT-like 1, cysteine endopeptidase|AUT-like 3 cysteine endopeptidase|autophagin-3|autophagy-related cysteine endopeptidase 3|autophagy-related protein 4 homolog C|cysteine protease ATG4C 20121230 -9606 84939 MUM1 - EXPAND1|HSPC211|MUM-1 HGNC:29641|Ensembl:ENSG00000160953|HPRD:14789|Vega:OTTHUMG00000180055 19 19p13.3 melanoma associated antigen (mutated) 1 protein-coding MUM1 melanoma associated antigen (mutated) 1 O PWWP domain-containing protein MUM1|melanoma ubiquitous mutated protein|mutated melanoma-associated antigen 1|protein expandere 20121230 -9606 84940 CORO6 PP1009 - HGNC:21356|Ensembl:ENSG00000167549|HPRD:08607|Vega:OTTHUMG00000132732 17 17q11.2 coronin 6 protein-coding CORO6 coronin 6 O clipin-E|coronin, actin binding protein 6|coronin-6|coronin-like protein E 20121230 -9606 84941 HSH2D - ALX|HSH2 HGNC:24920|MIM:608349|Ensembl:ENSG00000196684|HPRD:12219|Vega:OTTHUMG00000182256 19 19p13.12 hematopoietic SH2 domain containing protein-coding HSH2D hematopoietic SH2 domain containing O adaptor in lymphocytes of unknown function X|hematopoietic SH2 domain-containing protein|hematopoietic SH2 protein 20121230 -9606 84942 WDR73 HSPC264 - HGNC:25928|Ensembl:ENSG00000177082|HPRD:08608|Vega:OTTHUMG00000172375 15 15q25.2 WD repeat domain 73 protein-coding WDR73 WD repeat domain 73 O FLJ00296 protein|WD repeat-containing protein 73 20121230 -9606 84944 MAEL - CT128|RP11-102C16.1|SPATA35 HGNC:25929|MIM:611368|Ensembl:ENSG00000143194|HPRD:08609|Vega:OTTHUMG00000034432 1 1q24.1 maelstrom spermatogenic transposon silencer protein-coding MAEL maelstrom spermatogenic transposon silencer O cancer/testis antigen 128|maelstrom homolog|protein maelstrom homolog|spermatogenesis associated 35 20121230 -9606 84945 ABHD13 - BEM46L1|C13orf6|RP11-153I24.2|bA153I24.2 HGNC:20293|Ensembl:ENSG00000139826|HPRD:12618|Vega:OTTHUMG00000017330 13 13q33.3 abhydrolase domain containing 13 protein-coding ABHD13 abhydrolase domain containing 13 O abhydrolase domain-containing protein 13 20121230 -9606 84946 LTV1 - C6orf93|dJ468K18.4 HGNC:21173|Ensembl:ENSG00000135521|HPRD:12906|Vega:OTTHUMG00000015733 6 6q24.2 LTV1 homolog (S. cerevisiae) protein-coding LTV1 LTV1 homolog (S. cerevisiae) O protein LTV1 homolog 20121230 -9606 84947 SERAC1 RP1-257C19.1 - HGNC:21061|MIM:614725|Ensembl:ENSG00000122335|HPRD:10223|Vega:OTTHUMG00000015905 6 6q25.3 serine active site containing 1 protein-coding SERAC1 serine active site containing 1 O protein SERAC1|serine active site-containing protein 1 20121230 -9606 84948 TIGD5 - - HGNC:18336|Ensembl:ENSG00000179886|HPRD:18189|Vega:OTTHUMG00000162260 8 8q24.3 tigger transposable element derived 5 protein-coding TIGD5 tigger transposable element derived 5 O tigger transposable element-derived protein 5 20121230 -9606 84950 PRPF38A - Prp38|RP5-965L7.1 HGNC:25930|Ensembl:ENSG00000134748|HPRD:10972|Vega:OTTHUMG00000008199 1 1p32.3 PRP38 pre-mRNA processing factor 38 (yeast) domain containing A protein-coding PRPF38A PRP38 pre-mRNA processing factor 38 (yeast) domain containing A O pre-mRNA-splicing factor 38A 20121230 -9606 84951 TNS4 PP14434 CTEN HGNC:24352|MIM:608385|Ensembl:ENSG00000131746|HPRD:12223|Vega:OTTHUMG00000133330 17 17q21.2 tensin 4 protein-coding TNS4 tensin 4 O C terminal tensin like|C-terminal tensin-like protein|tensin-4 20121230 -9606 84952 CGNL1 - JACOP HGNC:25931|MIM:607856|Ensembl:ENSG00000128849|HPRD:09708|Vega:OTTHUMG00000166485 15 15q21.3 cingulin-like 1 protein-coding CGNL1 cingulin-like 1 O cingulin-like protein 1|junction-associated coiled-coil protein|paracingulin 20121230 -9606 84953 MICALCL - Ebitein1 HGNC:25933|MIM:612355|Ensembl:ENSG00000133808|HPRD:08610|Vega:OTTHUMG00000165777 11 11p15.3 MICAL C-terminal like protein-coding MICALCL MICAL C-terminal like O ERK2-binding testicular protein 1|MICAL C-terminal-like protein|ebitein-1 20121230 -9606 84954 MPND - - HGNC:25934|Ensembl:ENSG00000008382|HPRD:07873 19 19p13.3 MPN domain containing protein-coding MPND MPN domain containing O MPN domain-containing protein 20121230 -9606 84955 NUDCD1 - CML66|OVA66 HGNC:24306|MIM:606109|Ensembl:ENSG00000120526|HPRD:16200|Vega:OTTHUMG00000164931 8 8q23 NudC domain containing 1 protein-coding NUDCD1 NudC domain containing 1 O chronic myelogenous leukemia tumor antigen 66|nudC domain-containing protein 1|tumor antigen CML66 20121230 -9606 84957 RELT - TNFRSF19L|TRLT HGNC:13764|MIM:611211|Ensembl:ENSG00000054967|HPRD:15544|Vega:OTTHUMG00000167973 11 11q13.4 RELT tumor necrosis factor receptor protein-coding RELT RELT tumor necrosis factor receptor O receptor expressed in lymphoid tissues|tumor necrosis factor receptor superfamily member 19L 20121230 -9606 84958 SYTL1 RP11-4K3__A.6 JFC1|SLP1 HGNC:15584|MIM:608042|Ensembl:ENSG00000142765|Vega:OTTHUMG00000005770 1 1p36.11 synaptotagmin-like 1 protein-coding SYTL1 synaptotagmin-like 1 O NADPH oxidase-related, C2 domain-containing protein|exophilin-7|synaptotagmin-like protein 1 20121230 -9606 84959 UBASH3B - STS-1|STS1|TULA-2|p70 HGNC:29884|MIM:609201|Ensembl:ENSG00000154127|HPRD:16463|Vega:OTTHUMG00000166025 11 11q24.1 ubiquitin associated and SH3 domain containing B protein-coding UBASH3B ubiquitin associated and SH3 domain containing B O Cbl-interacting protein Sts-1|SH3 domain-containing 70 kDa protein, suppressor of T-cell receptor signaling 1, nm23-phosphorylated unknown substrate|T-cell ubiquitin ligand 2|cbl-interacting protein p70|nm23-phosphorylated unknown substrate|suppressor of T-cell receptor signaling 1|tyrosine-protein phosphatase STS1/TULA2|ubiquitin-associated and SH3 domain-containing protein B 20121230 -9606 84960 KIAA1984 RP11-216L13.7 PARF|RP11-216L13.9|bA216L13.7 HGNC:28236|Ensembl:ENSG00000213213|HPRD:17234|Vega:OTTHUMG00000159445 9 9q34.3 KIAA1984 protein-coding KIAA1984 KIAA1984 O uncharacterized coiled-coil domain-containing protein KIAA1984 20121230 -9606 84961 FBXL20 - Fbl2|Fbl20 HGNC:24679|MIM:609086|Ensembl:ENSG00000108306|HPRD:10951|Vega:OTTHUMG00000179002 17 17q12 F-box and leucine-rich repeat protein 20 protein-coding FBXL20 F-box and leucine-rich repeat protein 20 O F-box protein FBL2|F-box/LRR-repeat protein 20 20121230 -9606 84962 AJUBA - JUB HGNC:20250|MIM:609066|Ensembl:ENSG00000129474|HPRD:16426|Vega:OTTHUMG00000028711 14 14q11.2 ajuba LIM protein protein-coding AJUBA ajuba LIM protein O LIM domain-containing protein ajuba|jub, ajuba homolog|protein ajuba 20121230 -9606 84964 ALKBH6 - ABH6 HGNC:28243|MIM:613304|Ensembl:ENSG00000239382|HPRD:17510|Vega:OTTHUMG00000048137 19 19q13.12 alkB, alkylation repair homolog 6 (E. coli) protein-coding ALKBH6 alkB, alkylation repair homolog 6 (E. coli) O alkylated DNA repair protein alkB homolog 6|alkylation repair homolog 6|probable alpha-ketoglutarate-dependent dioxygenase ABH6 20121230 -9606 84966 IGSF21 RP11-121A23.1 - HGNC:28246|Ensembl:ENSG00000117154|HPRD:11309|Vega:OTTHUMG00000002432 1 1p36.13 immunoglobin superfamily, member 21 protein-coding IGSF21 immunoglobin superfamily, member 21 O immunoglobulin superfamily member 21 20121230 -9606 84967 LSM10 - MST074|MSTP074 HGNC:17562|Ensembl:ENSG00000181817|HPRD:14326|Vega:OTTHUMG00000008140 1 1p34.3 LSM10, U7 small nuclear RNA associated protein-coding LSM10 LSM10, U7 small nuclear RNA associated O U7 snRNA-associated Sm-like protein LSm10|U7 snRNP-specific Sm-like protein LSM10 20121230 -9606 84968 PNMA6A - MA6|PNMA6 HGNC:28248|Ensembl:ENSG00000224201|HPRD:06637|Vega:OTTHUMG00000024191 X Xq28 paraneoplastic Ma antigen family member 6A protein-coding PNMA6A paraneoplastic Ma antigen family member 6A O paraneoplastic antigen like 6A|paraneoplastic antigen-like protein 6A 20121230 -9606 84969 TOX2 RP5-1108D11.1 C20orf100|GCX-1|dJ1108D11.2|dJ495O3.1 HGNC:16095|MIM:611163|Ensembl:ENSG00000124191|HPRD:12734|Vega:OTTHUMG00000032517 20 20q13.12 TOX high mobility group box family member 2 protein-coding TOX2 TOX high mobility group box family member 2 O granulosa cell HMG box 1 20121230 -9606 84970 C1orf94 - - HGNC:28250|Ensembl:ENSG00000142698|HPRD:11310|Vega:OTTHUMG00000004012 1 1p34.3 chromosome 1 open reading frame 94 protein-coding C1orf94 chromosome 1 open reading frame 94 O uncharacterized protein C1orf94 20121230 -9606 84971 ATG4D - APG4-D|APG4D|AUTL4 HGNC:20789|MIM:611340|Ensembl:ENSG00000130734|HPRD:07005|Vega:OTTHUMG00000180582 19 19p13.2 autophagy related 4D, cysteine peptidase protein-coding ATG4D autophagy related 4D, cysteine peptidase O APG4 autophagy 4 homolog D|ATG4 autophagy related 4 homolog D|AUT-like 4 cysteine endopeptidase|AUT-like 4, cysteine endopeptidase|autophagin-4|autophagy-related cysteine endopeptidase 4|autophagy-related protein 4 homolog D|cysteine protease ATG4D|cysteine protease involved in autophagy 20121230 -9606 84973 SNHG7 - NCRNA00061 HGNC:28254 9 9q34.3 small nucleolar RNA host gene 7 (non-protein coding) miscRNA SNHG7 small nucleolar RNA host gene 7 (non-protein coding) O - 20121230 -9606 84975 MFSD5 UNQ832/PRO1759 - HGNC:28156|Ensembl:ENSG00000182544|HPRD:14416|Vega:OTTHUMG00000170028 12 12q13.13 major facilitator superfamily domain containing 5 protein-coding MFSD5 major facilitator superfamily domain containing 5 O major facilitator superfamily domain-containing protein 5 20121230 -9606 84976 DISP1 - DISPA HGNC:19711|MIM:607502|Ensembl:ENSG00000154309|HPRD:06326|Vega:OTTHUMG00000037893 1 1q41 dispatched homolog 1 (Drosophila) protein-coding DISP1 dispatched homolog 1 (Drosophila) O dispatched A|protein dispatched homolog 1 20121230 -9606 84978 FRMD5 - - HGNC:28214|Ensembl:ENSG00000171877|HPRD:17493|Vega:OTTHUMG00000060475 15 15q15.3 FERM domain containing 5 protein-coding FRMD5 FERM domain containing 5 O FERM domain-containing protein 5 20121230 -9606 84981 MIR22HG - C17orf91 HGNC:28219|HPRD:17497 17 17p13.3 MIR22 host gene (non-protein coding) miscRNA MIR22HG MIR22 host gene (non-protein coding) O - 20121230 -9606 84983 FAM222A-AS1 - - HGNC:28223 12 12q24.11 FAM222A antisense RNA 1 miscRNA FAM222A-AS1 FAM222A antisense RNA 1 O - 20121230 -9606 84984 CEP19 HSD5 C3orf34 HGNC:28209|Ensembl:ENSG00000174007|HPRD:17488|Vega:OTTHUMG00000153933 3 3q29 centrosomal protein 19kDa protein-coding CEP19 centrosomal protein 19kDa O centrosomal protein of 19 kDa 20121230 -9606 84985 FAM83A - BJ-TSA-9 HGNC:28210|Ensembl:ENSG00000147689|HPRD:17489|Vega:OTTHUMG00000165083 8 8q24.13 family with sequence similarity 83, member A protein-coding FAM83A family with sequence similarity 83, member A O protein FAM83A|tumor antigen BJ-TSA-9|tumor-specific gene expressed in prostate protein 20121230 -9606 84986 ARHGAP19 - - HGNC:23724|MIM:611587|Ensembl:ENSG00000213390|HPRD:12475|Vega:OTTHUMG00000018845 10 10q24.1 Rho GTPase activating protein 19 protein-coding ARHGAP19 Rho GTPase activating protein 19 O putative RhoGAP protein|rho GTPase-activating protein 19|rho-type GTPase-activating protein 19 20121230 -9606 84987 COX14 - C12orf62 HGNC:28216|MIM:614478|Ensembl:ENSG00000178449|HPRD:17495|Vega:OTTHUMG00000170084 12 12q13.12 cytochrome c oxidase assembly homolog 14 (S. cerevisiae) protein-coding COX14 cytochrome c oxidase assembly homolog 14 (S. cerevisiae) O COX14 cytochrome c oxidase assembly homolog|cytochrome c oxidase assembly protein COX14 20121230 -9606 84988 PPP1R16A - MYPT3 HGNC:14941|MIM:609172|Ensembl:ENSG00000160972|HPRD:16454|Vega:OTTHUMG00000165173 8 8q24.3 protein phosphatase 1, regulatory subunit 16A protein-coding PPP1R16A protein phosphatase 1, regulatory subunit 16A O likley ortholog of mouse myosin phosphatase targeting subunit 3|myosin phosphatase-targeting subunit 3|protein phosphatase 1 regulatory subunit 16A|protein phosphatase 1, regulatory (inhibitor) subunit 16A 20121230 -9606 84989 LOC84989 - - - 10 10q21.3 uncharacterized LOC84989 miscRNA - - - - 20121230 -9606 84991 RBM17 RP11-414H17.9 SPF45 HGNC:16944|MIM:606935|Ensembl:ENSG00000134453|HPRD:09501|Vega:OTTHUMG00000017618 10 10p15.1 RNA binding motif protein 17 protein-coding RBM17 RNA binding motif protein 17 O 45 kDa-splicing factor|RNA-binding motif protein 17|splicing factor 45|splicing factor 45kDa 20121230 -9606 84992 PIGY - PIG-Y HGNC:28213|MIM:610662|Ensembl:ENSG00000255072|HPRD:17492 4 4q22.1 phosphatidylinositol glycan anchor biosynthesis, class Y protein-coding PIGY phosphatidylinositol glycan anchor biosynthesis, class Y O phosphatidylinositol N-acetylglucosaminyltransferase subunit Y|phosphatidylinositol-glycan biosynthesis class Y protein 20121230 -9606 84993 UBL7 SB132 BMSC-UbP|TCBA1 HGNC:28221|MIM:609748|Ensembl:ENSG00000138629|HPRD:16556|Vega:OTTHUMG00000139001 15 15q24.1 ubiquitin-like 7 (bone marrow stromal cell-derived) protein-coding UBL7 ubiquitin-like 7 (bone marrow stromal cell-derived) O bone marrow stromal cell ubiquitin-like protein|ubiquitin-like protein 7|ubiquitin-like protein SB132 20121230 -9606 84996 C21orf119 PRED84 - HGNC:23128|HPRD:12792 21 21q22.11 chromosome 21 open reading frame 119 miscRNA C21orf119 chromosome 21 open reading frame 119 O - 20121230 -9606 85001 MGC16275 - - - 17 17q25.1 uncharacterized protein MGC16275 miscRNA - - - - 20121230 -9606 85002 FAM86B1 - - HGNC:28268|Ensembl:ENSG00000186523|HPRD:17515|Vega:OTTHUMG00000165298 8 8p23.1 family with sequence similarity 86, member B1 protein-coding FAM86B1 family with sequence similarity 86, member B1 O protein FAM86B1 20121230 -9606 85003 MGC2848 - - - 3 3q22.1 uncharacterized protein MGC2848 unknown - - - - 20120508 -9606 85004 RERG - - HGNC:15980|MIM:612664|Ensembl:ENSG00000134533|HPRD:15238|Vega:OTTHUMG00000168745 12 12p12.3 RAS-like, estrogen-regulated, growth inhibitor protein-coding RERG RAS-like, estrogen-regulated, growth inhibitor O ras-related and estrogen-regulated growth inhibitor 20121230 -9606 85007 AGXT2L2 PP9286 - HGNC:28249|MIM:614683|Ensembl:ENSG00000175309|HPRD:18482|Vega:OTTHUMG00000130892 5 5q35.3 alanine-glyoxylate aminotransferase 2-like 2 protein-coding AGXT2L2 alanine-glyoxylate aminotransferase 2-like 2 O 5-phosphohydroxy-L-lysine phospho-lyase|alanine--glyoxylate aminotransferase 2-like 2 20121230 -9606 85009 MGC16025 - - - 2 2q37.3 uncharacterized LOC85009 miscRNA - - - - 20121230 -9606 85012 TCEAL3 RP5-1055C14.5 - HGNC:28247|Ensembl:ENSG00000196507|HPRD:06636|Vega:OTTHUMG00000022106 X Xq22.2 transcription elongation factor A (SII)-like 3 protein-coding TCEAL3 transcription elongation factor A (SII)-like 3 O TCEA-like protein 3|transcription elongation factor A protein-like 3|transcription elongation factor S-II protein-like 3 20121230 -9606 85013 TMEM128 - - HGNC:28201|Ensembl:ENSG00000132406|HPRD:17483|Vega:OTTHUMG00000125475 4 4p16.3 transmembrane protein 128 protein-coding TMEM128 transmembrane protein 128 O - 20121230 -9606 85014 TMEM141 - RP11-216L13.7 HGNC:28211|Ensembl:ENSG00000244187|HPRD:17490|Vega:OTTHUMG00000020945 9 9q34.3 transmembrane protein 141 protein-coding TMEM141 transmembrane protein 141 O - 20121230 -9606 85015 USP45 RP11-98I9.5 - HGNC:20080|Ensembl:ENSG00000123552|Vega:OTTHUMG00000015267 6 6q16.2 ubiquitin specific peptidase 45 protein-coding USP45 ubiquitin specific peptidase 45 O deubiquitinating enzyme 45|ubiquitin carboxyl-terminal hydrolase 45|ubiquitin specific protease 45|ubiquitin thioesterase 45|ubiquitin thiolesterase 45|ubiquitin-specific-processing protease 45 20121230 -9606 85016 C11orf70 - - HGNC:28188|Ensembl:ENSG00000137691|HPRD:14433|Vega:OTTHUMG00000167320 11 11q22.1 chromosome 11 open reading frame 70 protein-coding C11orf70 chromosome 11 open reading frame 70 O uncharacterized protein C11orf70 20121230 -9606 85019 TMEM241 - C18orf45|hVVT HGNC:31723|Ensembl:ENSG00000134490|HPRD:12692|Vega:OTTHUMG00000131771 18 18q11.2 transmembrane protein 241 protein-coding TMEM241 transmembrane protein 241 O putative vertebrate vrg4-like nucleotide-sugar transporter truncated variant2|putative vertebrate vrg4-like nucleotide-sugar transporter variant1|transmembrane protein C18orf45 20121230 -9606 85021 REPS1 RP3-509I19.2 RALBP1 HGNC:15578|MIM:614825|Ensembl:ENSG00000135597|HPRD:09687|Vega:OTTHUMG00000015685 6 6q24.1 RALBP1 associated Eps domain containing 1 protein-coding REPS1 RALBP1 associated Eps domain containing 1 O ralBP1-associated Eps domain-containing protein 1|ralBP1-interacting protein 1 20121230 -9606 85025 TMEM60 DC32 C7orf35 HGNC:21754|Ensembl:ENSG00000135211|HPRD:12923|Vega:OTTHUMG00000130689 7 7q11.23 transmembrane protein 60 protein-coding TMEM60 transmembrane protein 60 O - 20121230 -9606 85026 C9orf37 AD038 - HGNC:23395|Ensembl:ENSG00000203993|HPRD:12955|Vega:OTTHUMG00000020988 9 9q34.3 chromosome 9 open reading frame 37 protein-coding C9orf37 chromosome 9 open reading frame 37 O AD038|uncharacterized protein C9orf37 20121230 -9606 85027 SMIM3 - C5orf62|MST150|NID67 HGNC:30248|MIM:608324|Ensembl:ENSG00000256235|HPRD:12212|Vega:OTTHUMG00000163646 5 5q33.1 small integral membrane protein 3 protein-coding SMIM3 small integral membrane protein 3 O NGF-induced differentiation clone 67 protein|putative small membrane protein NID67 20121230 -9606 85028 SNHG12 PNAS-123 C1orf79|LINC00100|NCRNA00100|RP4-669K10.5 HGNC:30062 1 1p35.3 small nucleolar RNA host gene 12 (non-protein coding) miscRNA SNHG12 small nucleolar RNA host gene 12 (non-protein coding) O - 20121230 -9606 85235 HIST1H2AH - H2A/S|H2AFALii|dJ86C11.1 HGNC:13671|Ensembl:ENSG00000184825|HPRD:13655|Vega:OTTHUMG00000014468 6 6p21.33 histone cluster 1, H2ah protein-coding HIST1H2AH histone cluster 1, H2ah O H2A histone family member|histone H2A type 1-H|histone H2A/s 20121230 -9606 85236 HIST1H2BK - H2B/S|H2BFAiii|H2BFT HGNC:13954|Ensembl:ENSG00000197903|HPRD:13658 6 6p21.33 histone cluster 1, H2bk protein-coding HIST1H2BK histone cluster 1, H2bk O H2B K|H2B histone family, member T|HIRA-interacting protein 1|histone 1, H2bk|histone H2B type 1-K|histone family member 20121230 -9606 85280 KRTAP9-4 - KAP9.4|KRTAP9.4 HGNC:18902|Ensembl:ENSG00000241595|HPRD:13951|Vega:OTTHUMG00000133438 17 17q12-q21 keratin associated protein 9-4 protein-coding KRTAP9-4 keratin associated protein 9-4 O keratin-associated protein 9-4|keratin-associated protein 9.4|ultrahigh sulfur keratin-associated protein 9.4 20121230 -9606 85285 KRTAP4-1 - KAP4.1|KAP4.10|KRTAP4-10|KRTAP4.10 HGNC:18907|HPRD:13940 17 17q12-q21 keratin associated protein 4-1 protein-coding KRTAP4-1 keratin associated protein 4-1 O keratin associated protein 4-10|keratin-associated protein 4-1|keratin-associated protein 4-10|keratin-associated protein 4.1|keratin-associated protein 4.10|ultrahigh sulfur keratin-associated protein 4.10 20121230 -9606 85289 KRTAP4-5 - KAP4.5|KRTAP4.5 HGNC:18899|Ensembl:ENSG00000198271|HPRD:13946|Vega:OTTHUMG00000133638 17 17q12-q21 keratin associated protein 4-5 protein-coding KRTAP4-5 keratin associated protein 4-5 O keratin-associated protein 4-5|keratin-associated protein 4.5|ultrahigh sulfur keratin-associated protein 4.5 20121230 -9606 85290 KRTAP4-3 - KAP4.3 HGNC:18908|Ensembl:ENSG00000196156|Vega:OTTHUMG00000133639 17 17q12-q21 keratin associated protein 4-3 protein-coding KRTAP4-3 keratin associated protein 4-3 O keratin-associated protein 4-3|keratin-associated protein 4.3|ultrahigh sulfur keratin-associated protein 4.3 20121230 -9606 85291 KRTAP4-2 - KAP4.2|KRTAP4.2 HGNC:18900|Ensembl:ENSG00000244537|HPRD:13944|Vega:OTTHUMG00000133437 17 17q12-q21 keratin associated protein 4-2 protein-coding KRTAP4-2 keratin associated protein 4-2 O keratin-associated protein 4-2|keratin-associated protein 4.2|ultrahigh sulfur keratin-associated protein 4.2 20121230 -9606 85293 KRTAP3-3 - KAP3.3|KRTAP3.3 HGNC:18890|Ensembl:ENSG00000212899|HPRD:13939|Vega:OTTHUMG00000133591 17 17q12-q21 keratin associated protein 3-3 protein-coding KRTAP3-3 keratin associated protein 3-3 O high sulfur keratin-associated protein 3.3|keratin-associated protein 3-3|keratin-associated protein 3.3 20121230 -9606 85294 KRTAP2-4 hCG_1645697 KAP2.1B|KAP2.4|KRTAP2.4 HGNC:18891|Ensembl:ENSG00000213417|HPRD:13936|Vega:OTTHUMG00000133594 17 17q21.2 keratin associated protein 2-4 protein-coding KRTAP2-4 keratin associated protein 2-4 O high sulfur keratin-associated protein 2.4|keratin associated protein 2.1B|keratin-associated protein 2-4|keratin-associated protein 2.4 20121230 -9606 85300 ATCAY - BNIP-H|CLAC HGNC:779|MIM:608179|Ensembl:ENSG00000167654|HPRD:10491 19 19p13.3 ataxia, cerebellar, Cayman type protein-coding ATCAY ataxia, cerebellar, Cayman type O BNIP-2-homolgy|Cayman ataxia|ataxia cayman type protein|caytaxin 20121230 -9606 85301 COL27A1 RP11-82I1.1 - HGNC:22986|MIM:608461|Ensembl:ENSG00000196739|HPRD:09767|Vega:OTTHUMG00000020537 9 9q32 collagen, type XXVII, alpha 1 protein-coding COL27A1 collagen, type XXVII, alpha 1 O collagen alpha-1(XXVII) chain 20121230 -9606 85302 FBF1 - Alb|FBF-1 HGNC:24674|Ensembl:ENSG00000188878|Vega:OTTHUMG00000179919 17 17q25.1 Fas (TNFRSF6) binding factor 1 protein-coding FBF1 Fas (TNFRSF6) binding factor 1 O Fas binding protein 1|albatross|fas-binding factor 1|protein albatross 20121230 -9606 85303 HIST1H2APS2 - H2A/T|H2AFTP|dJ139G21.2 HGNC:18804 6 6p22 histone cluster 1, H2a, pseudogene 2 pseudo HIST1H2APS2 histone cluster 1, H2a, pseudogene 2 O - 20121230 -9606 85313 PPIL4 RP11-703H16.1 HDCME13P HGNC:15702|MIM:607609|Ensembl:ENSG00000131013|HPRD:07606|Vega:OTTHUMG00000015788 6 6q25.1 peptidylprolyl isomerase (cyclophilin)-like 4 protein-coding PPIL4 peptidylprolyl isomerase (cyclophilin)-like 4 O PPIase|cyclophilin-like protein PPIL4|cyclophilin-type peptidyl-prolyl cis-trans isomerase|peptidyl-prolyl cis-trans isomerase-like 4|rotamase PPIL4|serologically defined breast cancer antigen NY-BR-18 20121230 -9606 85314 ERVE-1 - ERVE1|HERV-E1|HERVE1 HGNC:14602|MIM:606601 17 17q11.2 endogenous retrovirus group E, member 1 unknown ERVE-1 endogenous retrovirus group E, member 1 O - 20121017 -9606 85315 PAQR8 - C6orf33|LMPB1|MPRB HGNC:15708|MIM:607780|Ensembl:ENSG00000170915|HPRD:07415|Vega:OTTHUMG00000014846 6 6p12.1 progestin and adipoQ receptor family member VIII protein-coding PAQR8 progestin and adipoQ receptor family member VIII O lysosomal membrane protein in brain 1|lysosomal membrane protein in brain-1|mPR beta|membrane progestin receptor beta|progestin and adipoQ receptor family member 8 20121230 -9606 85316 BAGE5 - CT2.5 HGNC:15732|HPRD:16537 13 13cen B melanoma antigen family, member 5 protein-coding BAGE5 B melanoma antigen family, member 5 O B melanoma antigen 5|cancer/testis antigen 2.5|cancer/testis antigen family 2, member 5 20120508 -9606 85317 BAGE4 - CT2.4|MLL3P HGNC:15730|HPRD:16536 21 21p11.1 B melanoma antigen family, member 4 protein-coding BAGE4 B melanoma antigen family, member 4 O B melanoma antigen 4|MLL3 pseudogene|cancer/testis antigen 2.4|cancer/testis antigen family 2, member 4 20121230 -9606 85318 BAGE3 - CT2.3 HGNC:15728|HPRD:10685 21 21p11.2 B melanoma antigen family, member 3 protein-coding BAGE3 B melanoma antigen family, member 3 O B melanoma antigen 3|cancer/testis antigen 2.3|cancer/testis antigen family 2, member 3 20120508 -9606 85319 BAGE2 - CT2.2 HGNC:15723|HPRD:16535 21 21p B melanoma antigen family, member 2 protein-coding BAGE2 B melanoma antigen family, member 2 O B melanoma antigen 2|cancer/testis antigen 2.2|cancer/testis antigen family 2, member 2 20121230 -9606 85320 ABCC11 - EWWD|MRP8|WW HGNC:14639|MIM:607040|Ensembl:ENSG00000121270|HPRD:06127|Vega:OTTHUMG00000133146 16 16q12.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 protein-coding ABCC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 O ATP-binding cassette protein C11|ATP-binding cassette sub-family C member 11|ATP-binding cassette transporter MRP8|ATP-binding cassette transporter sub-family C member 11|multi-resistance protein 8|multidrug resistance-associated protein 8 20121230 -9606 85329 LGALS12 - GAL12|GRIP1 HGNC:15788|MIM:606096|Ensembl:ENSG00000133317|HPRD:16196|Vega:OTTHUMG00000167807 11 11q13 lectin, galactoside-binding, soluble, 12 protein-coding LGALS12 lectin, galactoside-binding, soluble, 12 O galectin 12|galectin-12|galectin-related inhibitor of proliferation 20121230 -9606 85340 KRT124P - HBA|KRTHBP1 HGNC:30195 12 12q13 keratin 124 pseudogene pseudo KRT124P keratin 124 pseudogene O - 20121230 -9606 85343 KRTAP2-5P - KAP2A|KRTAP2P1 HGNC:18920 17 17q21.2 keratin associated protein 2-5, pseudogene pseudo KRTAP2-5P keratin associated protein 2-5, pseudogene O - 20121230 -9606 85344 KRT123P - HBB|KRTHBP2 HGNC:30196 12 12q13 keratin 123 pseudogene pseudo KRT123P keratin 123 pseudogene O - 20121230 -9606 85345 KRTAP3-4P - KAP3A|KRTAP3P1 HGNC:18919 17 17q21.2 keratin associated protein 3-4, pseudogene pseudo KRTAP3-4P keratin associated protein 3-4, pseudogene O - 20121230 -9606 85347 KRTAP9-11P - KAP9A|KRTAP9P1 HGNC:18918 17 17q21.2 keratin associated protein 9-11, pseudogene pseudo KRTAP9-11P keratin associated protein 9-11, pseudogene O - 20121230 -9606 85348 KRT122P - HBC|KRTHBP3 HGNC:30197 12 12q13 keratin 122 pseudogene pseudo KRT122P keratin 122 pseudogene O - 20121230 -9606 85349 KRT121P - HBD|KRTHBP4 HGNC:30198 12 12q13 keratin 121 pseudogene pseudo KRT121P keratin 121 pseudogene O - 20121230 -9606 85352 KIAA1644 LL22NC03-75B3.6 - HGNC:29335|Ensembl:ENSG00000138944|Vega:OTTHUMG00000030991 22 - KIAA1644 protein-coding KIAA1644 KIAA1644 O uncharacterized protein KIAA1644 20121230 -9606 85354 KRTAP4-16P - KAP4A|KRTAP4P1 HGNC:18921 17 17q12-q21 keratin associated protein 4-16, pseudogene pseudo KRTAP4-16P keratin associated protein 4-16, pseudogene O - 20121230 -9606 85358 SHANK3 - DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2 HGNC:14294|MIM:606230|Ensembl:ENSG00000251322|Vega:OTTHUMG00000150169 22 22q13.3 SH3 and multiple ankyrin repeat domains 3 protein-coding SHANK3 SH3 and multiple ankyrin repeat domains 3 O SH3 and multiple ankyrin repeat domains protein 3|proline rich synapse associated protein 2|shank postsynaptic density protein 20121230 -9606 85359 DGCR6L - - HGNC:18551|MIM:609459|Ensembl:ENSG00000128185|HPRD:16800|Vega:OTTHUMG00000150583 22 22q11 DiGeorge syndrome critical region gene 6-like protein-coding DGCR6L DiGeorge syndrome critical region gene 6-like O DiGeorge syndrome critical region gene 6 like|diGeorge syndrome critical region 6-like protein|protein DGCR6L 20121230 -9606 85360 SYDE1 - 7h3 HGNC:25824|Ensembl:ENSG00000105137|HPRD:07830 19 19p13.12 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) protein-coding SYDE1 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) O protein syd-1 homolog 1|rho GTPase-activating protein SYDE1|synapse defective protein 1 homolog 1 20121230 -9606 85363 TRIM5 - RNF88|TRIM5alpha HGNC:16276|MIM:608487|Ensembl:ENSG00000132256|HPRD:07004|Vega:OTTHUMG00000066893 11 11p15 tripartite motif containing 5 protein-coding TRIM5 tripartite motif containing 5 O ring finger protein 88|tripartite motif containing 5 transcript variant iota|tripartite motif containing 5 transcript variant kappa|tripartite motif protein TRIM5|tripartite motif-containing protein 5 20121230 -9606 85364 ZCCHC3 - C20orf99 HGNC:16230|Ensembl:ENSG00000177764|HPRD:15701|Vega:OTTHUMG00000031629 20 20p13-p12.2 zinc finger, CCHC domain containing 3 protein-coding ZCCHC3 zinc finger, CCHC domain containing 3 O zinc finger CCHC domain-containing protein 3 20121230 -9606 85365 ALG2 RP11-13B9.1 CDGIi|NET38|hALPG2 HGNC:23159|MIM:607905|Ensembl:ENSG00000119523|HPRD:09716|Vega:OTTHUMG00000020355 9 9q22.33 asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) protein-coding ALG2 asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) O GDP-Man:Man(1)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase|GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase|GDP-Man:Man(2)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase|alpha-1,3-mannosyltransferase ALG2|alpha-1,3/1,6-mannosyltransferase ALG2|asparagine-linked glycosylation 2 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase)|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)|asparagine-linked glycosylation protein 2 homolog|homolog of yeast ALG2 20121230 -9606 85366 MYLK2 - KMLC|MLCK|MLCK2|skMLCK HGNC:16243|MIM:606566|Ensembl:ENSG00000101306|HPRD:05953|Vega:OTTHUMG00000032194 20 20q13.31 myosin light chain kinase 2 protein-coding MYLK2 myosin light chain kinase 2 O myosin light chain kinase 2, skeletal muscle|myosin light chain kinase 2, skeletal/cardiac muscle 20121230 -9606 85367 KIAA1652 - - - 22 - KIAA1652 protein unknown - - - - 20120710 -9606 85368 KIAA1654 - - - 22 - KIAA1654 protein unknown - - - - 20120508 -9606 85369 STRIP1 - FAM40A|FAR11A HGNC:25916|Ensembl:ENSG00000143093|Vega:OTTHUMG00000170607 1 1p13.3 striatin interacting protein 1 protein-coding STRIP1 striatin interacting protein 1 O FAR11 factor arrest 11 homolog A|family with sequence similarity 40, member A|homolog of yeast FAR11 protein 1|protein FAM40A 20121230 -9606 85371 KIAA1656 - - - 22 - KIAA1656 protein miscRNA - - - - 20121230 -9606 85375 KIAA1661 - - - 22 - KIAA1661 protein unknown - - - - 20120710 -9606 85376 RIMBP3 - RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A HGNC:29344|MIM:612699|Ensembl:ENSG00000196622|Vega:OTTHUMG00000150568 22 22q11.21 RIMS binding protein 3 protein-coding RIMBP3 RIMS binding protein 3 O RIMS binding protein 3.1|RIMS-binding protein 3A 20121230 -9606 85377 MICALL1 AL022311.2 MICAL-L1|MIRAB13 HGNC:29804|Ensembl:ENSG00000100139|HPRD:11363|Vega:OTTHUMG00000150670 22 22q13.1 MICAL-like 1 protein-coding MICALL1 MICAL-like 1 O MICAL-like protein 1|molecule interacting with Rab13 20121230 -9606 85378 TUBGCP6 RP3-402G11.6 GCP-6|GCP6|MCCRP HGNC:18127|MIM:610053|Ensembl:ENSG00000128159|HPRD:15589|Vega:OTTHUMG00000030150 22 22q13.31-q13.33 tubulin, gamma complex associated protein 6 protein-coding TUBGCP6 tubulin, gamma complex associated protein 6 O gamma-tubulin complex component 6 20121230 -9606 85379 KIAA1671 CTA-221G9.4 - HGNC:29345|Ensembl:ENSG00000197077|Vega:OTTHUMG00000150841 22 22q11.23 KIAA1671 protein-coding KIAA1671 KIAA1671 O CTA-221G9.5|uncharacterized protein KIAA1671 20121230 -9606 85388 SNORD14B - RNU14B|U14|U14B HGNC:31803 11 11p15 small nucleolar RNA, C/D box 14B snoRNA SNORD14B small nucleolar RNA, C/D box 14B O - 20121230 -9606 85389 SNORD14C - - HGNC:30352 11 11q23.3-q25 small nucleolar RNA, C/D box 14C snoRNA SNORD14C small nucleolar RNA, C/D box 14C O - 20121230 -9606 85390 SNORD14D - - HGNC:30353 11 11q23.3-q25 small nucleolar RNA, C/D box 14D snoRNA SNORD14D small nucleolar RNA, C/D box 14D O - 20121230 -9606 85391 SNORD14E - - HGNC:30354 11 11q23.3-q25 small nucleolar RNA, C/D box 14E snoRNA SNORD14E small nucleolar RNA, C/D box 14E O - 20121230 -9606 85395 FAM207A PRED56 C21orf70 HGNC:15811|Ensembl:ENSG00000160256|HPRD:10765|Vega:OTTHUMG00000090293 21 21q22.3 family with sequence similarity 207, member A protein-coding FAM207A family with sequence similarity 207, member A O protein FAM207A 20121230 -9606 85397 RGS8 RP11-317P15.2 - HGNC:16810|MIM:607189|Ensembl:ENSG00000135824|HPRD:06221|Vega:OTTHUMG00000035219 1 1q25 regulator of G-protein signaling 8 protein-coding RGS8 regulator of G-protein signaling 8 O regulator of G-protein signalling 8 20121230 -9606 85403 EAF1 - - HGNC:20907|MIM:608315|Ensembl:ENSG00000144597|HPRD:12209|Vega:OTTHUMG00000162544 3 3p25.1 ELL associated factor 1 protein-coding EAF1 ELL associated factor 1 O ELL (eleven nineteen lysine-rich leukemia gene)-associated factor 1|ELL-associated factor 1 20121230 -9606 85406 DNAJC14 hCG_2016179 DNAJ|DRIP78|HDJ3|LIP6 HGNC:24581|MIM:606092|Ensembl:ENSG00000135392|HPRD:12082|Vega:OTTHUMG00000170427 12 12q13.2 DnaJ (Hsp40) homolog, subfamily C, member 14 protein-coding DNAJC14 DnaJ (Hsp40) homolog, subfamily C, member 14 O LYST-interacting protein LIP6|dnaJ homolog subfamily C member 14|dnaJ protein homolog 3|dopamine receptor interacting protein|dopamine receptor-interacting protein of 78 kDa|hDj-3|human DnaJ protein 3 20121230 -9606 85407 NKD1 PP7246 Naked1 HGNC:17045|MIM:607851|Ensembl:ENSG00000140807|HPRD:08482|Vega:OTTHUMG00000133169 16 16q12.1 naked cuticle homolog 1 (Drosophila) protein-coding NKD1 naked cuticle homolog 1 (Drosophila) O Dvl-binding protein|naked cuticle-1|naked-1|protein naked cuticle homolog 1 20121230 -9606 85409 NKD2 - Naked2 HGNC:17046|MIM:607852|Ensembl:ENSG00000145506|HPRD:08483|Vega:OTTHUMG00000090348 5 5p15.3 naked cuticle homolog 2 (Drosophila) protein-coding NKD2 naked cuticle homolog 2 (Drosophila) O Dvl-binding protein NKD2|protein naked cuticle homolog 2 20121230 -9606 85413 SLC22A16 RP1-261K5.1 CT2|FLIPT2|OAT6|OCT6|OKB1|dJ261K5.1 HGNC:20302|MIM:608276|Ensembl:ENSG00000004809|HPRD:12202|Vega:OTTHUMG00000016171 6 6q22.1|6q21-q22.1 solute carrier family 22 (organic cation/carnitine transporter), member 16 protein-coding SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 O WUGSC:RG331P03.1|carnitine transporter 2|flipt 2|fly-like putative organic ion transporter 2|fly-like putative transporter 2|organic cation transporter 6|organic cation transporter OKB1|organic cation/carnitine transporter 6|solute carrier family 22 (organic cation transporter), member 16|solute carrier family 22 member 16 20121230 -9606 85414 SLC45A3 - IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST HGNC:8642|MIM:605097|Ensembl:ENSG00000158715|HPRD:16312|Vega:OTTHUMG00000037223 1 1q32.1 solute carrier family 45, member 3 protein-coding SLC45A3 solute carrier family 45, member 3 O prostate cancer associated protein 2|prostate cancer associated protein 6|prostate cancer associated protein 8|prostate cancer-associated gene 2|prostate cancer-associated gene 6|prostate cancer-associated gene 8|prostate cancer-associated protein 6|prostein|solute carrier family 45 member 3 20121230 -9606 85415 RHPN2 - P76RBE|RHOBP HGNC:19974|Ensembl:ENSG00000131941|HPRD:10192|Vega:OTTHUMG00000180340 19 19q13.11 rhophilin, Rho GTPase binding protein 2 protein-coding RHPN2 rhophilin, Rho GTPase binding protein 2 O 76 kDa RhoB effector protein|GTP-Rho-binding protein 2|rhophilin 2|rhophilin-2|rhophilin-like Rho-GTPase binding protein 20121230 -9606 85416 ZIC5 - - HGNC:20322|Ensembl:ENSG00000139800|HPRD:15737|Vega:OTTHUMG00000017280 13 13q32.3 Zic family member 5 protein-coding ZIC5 Zic family member 5 O Zic family member 5 (odd-paired homolog, Drosophila)|zinc family member 5 protein|zinc finger protein ZIC 5|zinc finger protein of the cerebellum 5 20121230 -9606 85417 CCNB3 RP11-805H4.3 - HGNC:18709|MIM:300456|Ensembl:ENSG00000147082|HPRD:02350|Vega:OTTHUMG00000021519 X Xp11 cyclin B3 protein-coding CCNB3 cyclin B3 O G2/mitotic-specific cyclin-B3 20121230 -9606 85437 ZCRB1 - MADP-1|MADP1|RBM36|SNRNP31|ZCCHC19 HGNC:29620|MIM:610750|Ensembl:ENSG00000139168|HPRD:14344|Vega:OTTHUMG00000169382 12 12q12 zinc finger CCHC-type and RNA binding motif 1 protein-coding ZCRB1 zinc finger CCHC-type and RNA binding motif 1 O U11/U12 small nuclear ribonucleoprotein 31 kDa protein|U11/U12 snRNP 31 kDa protein|U11/U12 snRNP 31K|U11/U12-31K|zinc finger CCHC-type and RNA-binding motif-containing protein 1 20121230 -9606 85438 CABS1 - C4orf35|CLPH|NYD-SP26 HGNC:30710|Ensembl:ENSG00000145309|HPRD:14865|Vega:OTTHUMG00000129405 4 4q13.3 calcium-binding protein, spermatid-specific 1 protein-coding CABS1 calcium-binding protein, spermatid-specific 1 O calcium-binding and spermatid-specific protein 1|calcium-binding protein, sperm-specific 1|casein-like phosphoprotein|testis development protein NYD-SP26 20121230 -9606 85439 STON2 - STN2|STNB|STNB2 HGNC:30652|MIM:608467|Ensembl:ENSG00000140022|HPRD:10531|Vega:OTTHUMG00000171416 14 14q31.1 stonin 2 protein-coding STON2 stonin 2 O homolog of stoned B|stoned B homolog 2|stonin-2 20121230 -9606 85440 DOCK7 RP4-740B20.2 ZIR2 HGNC:19190|Ensembl:ENSG00000116641|HPRD:16833|Vega:OTTHUMG00000013131 1 1p31.3 dedicator of cytokinesis 7 protein-coding DOCK7 dedicator of cytokinesis 7 O dedicator of cytokinesis protein 7 20121230 -9606 85441 HELZ2 RP4-697K14.11-001 PDIP-1|PRIC285 HGNC:30021|MIM:611265|Ensembl:ENSG00000130589|HPRD:11459|Vega:OTTHUMG00000032969 20 20q13.33 helicase with zinc finger 2, transcriptional coactivator protein-coding HELZ2 helicase with zinc finger 2, transcriptional coactivator O ATP-dependent helicase PRIC285|PDIP1|PPAR gamma DBD-interacting protein 1|PPAR-alpha-interacting complex protein 285|PPAR-gamma DBD-interacting protein 1|PPAR-gamma DNA-binding domain-interacting protein 1|PPARG-DBD-interacting protein 1|PPARgamma-DNA-binding domain-interacting protein1|PRIC complex|peroxisomal proliferator activated receptor A interacting complex 285|peroxisomal proliferator-activated receptor A interacting complex 285|peroxisomal proliferator-activated receptor A-interacting complex 285 kDa protein|peroxisomal proliferator-activated receptor alpha-interacting cofactor complex, 285 kD subunit 20121230 -9606 85442 KNDC1 RP13-439H18.3 C10orf23|RASGEF2|bB439H18.3 HGNC:29374|Ensembl:ENSG00000171798|HPRD:13931|Vega:OTTHUMG00000019303 10 10q26.3 kinase non-catalytic C-lobe domain (KIND) containing 1 protein-coding KNDC1 kinase non-catalytic C-lobe domain (KIND) containing 1 O KIND domain-containing protein 1|RasGEF domain family, member 2|cerebral protein 9|kinase non-catalytic C-lobe domain-containing protein 1|protein very KIND|ras-GEF domain-containing family member 2 20121230 -9606 85443 DCLK3 hCG_16695 CLR|DCAMKL3|DCDC3C|DCK3 HGNC:19005|MIM:613167|Ensembl:ENSG00000163673|Vega:OTTHUMG00000155805 3 3p22.2 doublecortin-like kinase 3 protein-coding DCLK3 doublecortin-like kinase 3 O CLICK-I,II-related|doublecortin and CaM kinase-like 3|doublecortin domain-containing protein 3C|doublecortin-like and CAM kinase-like 3|serine/threonine-protein kinase DCLK3 20121230 -9606 85444 LRRCC1 - CLERC|SAP2|VFL1 HGNC:29373|Ensembl:ENSG00000133739|HPRD:11160|Vega:OTTHUMG00000164784 8 8q21.2 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding LRRCC1 leucine rich repeat and coiled-coil centrosomal protein 1 O centrosomal leucine-rich repeat and coiled-coil containing protein|centrosomal leucine-rich repeat and coiled-coil domain-containing protein|leucine rich repeat and coiled-coil domain containing 1|leucine-rich repeat and coiled-coil domain-containing protein 1|sodium channel associated protein 2|variable number of flagella 1 homolog 20121230 -9606 85445 CNTNAP4 - CASPR4 HGNC:18747|MIM:610518|Ensembl:ENSG00000152910|HPRD:13079|Vega:OTTHUMG00000137617 16 16q23.1 contactin associated protein-like 4 protein-coding CNTNAP4 contactin associated protein-like 4 O cell recognition molecule Caspr4|cell recognition protein CASPR4|contactin-associated protein-like 4 20121230 -9606 85446 ZFHX2 - ZFH-5|ZNF409 HGNC:20152|Ensembl:ENSG00000136367|HPRD:18318|Vega:OTTHUMG00000156894 14 14q11.2 zinc finger homeobox 2 protein-coding ZFHX2 zinc finger homeobox 2 O ZFH-2|zinc finger homeobox protein 2|zinc finger homeodomain protein 2|zinc finger protein 409 20121230 -9606 85449 KIAA1755 RP5-1054A22.3 - HGNC:29372|Ensembl:ENSG00000149633|Vega:OTTHUMG00000032436 20 20q11.23 KIAA1755 protein-coding KIAA1755 KIAA1755 O uncharacterized protein KIAA1755 20121230 -9606 85450 ITPRIP RP11-127L20.4 DANGER|KIAA1754|bA127L20|bA127L20.2 HGNC:29370|Ensembl:ENSG00000148841|HPRD:13892|Vega:OTTHUMG00000019003 10 10q25.1 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein O inositol 1,4,5-triphosphate receptor-interacting protein|inositol 1,4,5-trisphosphate receptor-interacting protein 20121230 -9606 85451 UNK - ZC3H5|ZC3HDC5 HGNC:29369|Ensembl:ENSG00000132478|Vega:OTTHUMG00000179892 17 17q25.1 unkempt homolog (Drosophila) protein-coding UNK unkempt homolog (Drosophila) O RING finger protein unkempt homolog|zinc finger CCCH domain-containing protein 5|zinc finger CCCH type domain containing 5|zinc finger CCCH-type containing 5|zinc finger CCCH-type domain containing 5 20121230 -9606 85452 KIAA1751 RP1-140A9.6 - HGNC:29368|Ensembl:ENSG00000142609 1 1p36.33 KIAA1751 protein-coding KIAA1751 KIAA1751 O uncharacterized protein KIAA1751 20121230 -9606 85453 TSPYL5 - - HGNC:29367|MIM:614721|Ensembl:ENSG00000180543|HPRD:15576|Vega:OTTHUMG00000164857 8 8q22.1 TSPY-like 5 protein-coding TSPYL5 TSPY-like 5 O TSPY-like protein 5|testis-specific Y-encoded-like protein 5 20121230 -9606 85455 DISP2 - DISPB|HsT16908 HGNC:19712|MIM:607503|Ensembl:ENSG00000140323|HPRD:06327|Vega:OTTHUMG00000129983 15 15q15.1 dispatched homolog 2 (Drosophila) protein-coding DISP2 dispatched homolog 2 (Drosophila) O dispatched B|protein dispatched homolog 2 20121230 -9606 85456 TNKS1BP1 - TAB182 HGNC:19081|MIM:607104|Ensembl:ENSG00000149115|HPRD:06164|Vega:OTTHUMG00000167022 11 11q12.1 tankyrase 1 binding protein 1, 182kDa protein-coding TNKS1BP1 tankyrase 1 binding protein 1, 182kDa O 182 kDa tankyrase-1-binding protein|tankyrase 1-binding protein of 182 kDa 20121230 -9606 85457 KIAA1737 - - HGNC:20365|Ensembl:ENSG00000198894|HPRD:13890|Vega:OTTHUMG00000171573 14 14q24.3 KIAA1737 protein-coding KIAA1737 KIAA1737 O uncharacterized protein KIAA1737 20121230 -9606 85458 DIXDC1 - CCD1 HGNC:23695|MIM:610493|Ensembl:ENSG00000150764|HPRD:16804 11 11q23.1 DIX domain containing 1 protein-coding DIXDC1 DIX domain containing 1 O DIX domain-containing protein 1|coiled-coil protein DIX1|coiled-coil-DIX1|dixin 20121230 -9606 85459 KIAA1731 hCG_2036584 - HGNC:29366|Ensembl:ENSG00000166004|Vega:OTTHUMG00000167449 11 11q21 KIAA1731 protein-coding KIAA1731 KIAA1731 O centrosomal protein KIAA1731 20121230 -9606 85460 ZNF518B - - HGNC:29365|Ensembl:ENSG00000178163|HPRD:13889|Vega:OTTHUMG00000160060 4 4p16.1 zinc finger protein 518B protein-coding ZNF518B zinc finger protein 518B O - 20121230 -9606 85461 TANC1 - ROLSB|TANC HGNC:29364|MIM:611397|Ensembl:ENSG00000115183|HPRD:18146|Vega:OTTHUMG00000153945 2 2q24.2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 O TPR domain, ankyrin-repeat and coiled-coil-containing|protein TANC1|rolling pebbles homolog B|tetratricopeptide repeat, ankyrin repeat and coiled-coil domain-containing protein 1 20121230 -9606 85462 FHDC1 - - HGNC:29363|Ensembl:ENSG00000137460|HPRD:13888|Vega:OTTHUMG00000161452 4 4q31.3 FH2 domain containing 1 protein-coding FHDC1 FH2 domain containing 1 O FH2 domain-containing protein 1 20121230 -9606 85463 ZC3H12C - MCPIP3 HGNC:29362|MIM:615001|Ensembl:ENSG00000149289|Vega:OTTHUMG00000166572 11 11q22.3 zinc finger CCCH-type containing 12C protein-coding ZC3H12C zinc finger CCCH-type containing 12C O MCP induced protein 3|MCP-induced protein 3|probable ribonuclease ZC3H12C|zinc finger CCCH domain-containing protein 12C 20121230 -9606 85464 SSH2 - SSH-2 HGNC:30580|MIM:606779|Ensembl:ENSG00000141298|HPRD:09487|Vega:OTTHUMG00000132752 17 17q11.2 slingshot homolog 2 (Drosophila) protein-coding SSH2 slingshot homolog 2 (Drosophila) O SSH-2L|SSH-like protein 2|hSSH-2L|protein phosphatase Slingshot homolog 2|slingshot 2 20121230 -9606 85465 EPT1 - SELI|SEPI HGNC:29361|MIM:607915|Ensembl:ENSG00000138018|HPRD:07616|Vega:OTTHUMG00000151931 2 2p23.3 ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) protein-coding EPT1 ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) O ethanolaminephosphotransferase 1|ethanolaminephosphotransferase1|hEPT1|selenoprotein I 20121230 -9606 85474 LBX2 LP3727 - HGNC:15525|MIM:607164|Ensembl:ENSG00000179528|HPRD:16235|Vega:OTTHUMG00000170595 2 2p13.1 ladybird homeobox 2 protein-coding LBX2 ladybird homeobox 2 O lady bird-like homeobox 2|ladybird homeobox homolog 2|ladybird homeobox protein homolog 2|ladybird-like homeobox 2|ladybird-like homeodomain protein 2|transcription factor LBX2 20121230 -9606 85476 GFM1 - COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1 HGNC:13780|MIM:606639|Ensembl:ENSG00000168827|HPRD:07365|Vega:OTTHUMG00000158804 3 3q25 G elongation factor, mitochondrial 1 protein-coding GFM1 G elongation factor, mitochondrial 1 O EF-Gmt|G translation elongation factor, mitochondrial|elongation factor G 1, mitochondrial|elongation factor G, mitochondrial|elongation factor G1|mEF-G 1|mitochondrial elongation factor G|mitochondrial elongation factor G1 20121230 -9606 85477 SCIN - - HGNC:21695|MIM:613416|Ensembl:ENSG00000006747|HPRD:11539|Vega:OTTHUMG00000152385 7 7p21.3 scinderin protein-coding SCIN scinderin O adseverin 20121230 -9606 85478 CCDC65 - NYD-SP28 HGNC:29937|MIM:611088|Ensembl:ENSG00000139537|HPRD:14867|Vega:OTTHUMG00000170401 12 12q13.12 coiled-coil domain containing 65 protein-coding CCDC65 coiled-coil domain containing 65 O coiled-coil domain-containing protein 65|testis development protein NYD-SP28 20121230 -9606 85479 DNAJC5B - CSP-beta HGNC:24138|MIM:613945|Ensembl:ENSG00000147570|HPRD:07474|Vega:OTTHUMG00000164470 8 8q13.1 DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding DNAJC5B DnaJ (Hsp40) homolog, subfamily C, member 5 beta O beta cysteine string protein|beta-CSP|cysteine string protein beta|dnaJ homolog subfamily C member 5B|dnaJ homolog subfamily C member X 20121230 -9606 85480 TSLP - - HGNC:30743|MIM:607003|Ensembl:ENSG00000145777|HPRD:06108|Vega:OTTHUMG00000128791 5 5q22.1 thymic stromal lymphopoietin protein-coding TSLP thymic stromal lymphopoietin O - 20121230 -9606 85481 PSKH2 - - HGNC:18997|Ensembl:ENSG00000147613|HPRD:15192|Vega:OTTHUMG00000163638 8 8q21.3 protein serine kinase H2 protein-coding PSKH2 protein serine kinase H2 O PSK-H2|serine/threonine kinase PSKH2|serine/threonine-protein kinase H2 20121230 -9606 85486 RPS19P1 - RPS19_3_1688|bA189K21.7 HGNC:16534 20 20p11.23 ribosomal protein S19 pseudogene 1 pseudo RPS19P1 ribosomal protein S19 pseudogene 1 O - 20121230 -9606 85487 RPS19P2 - RPS19_1_86 HGNC:17047 1 1p13.2 ribosomal protein S19 pseudogene 2 pseudo RPS19P2 ribosomal protein S19 pseudogene 2 O - 20121230 -9606 85495 RPPH1 - H1RNA HGNC:19273|MIM:608513 14 14q11.2 ribonuclease P RNA component H1 miscRNA RPPH1 ribonuclease P RNA component H1 O - 20121230 -9606 85502 SCAR3 - SCABD HGNC:32976|MIM:271250 6 6p23-p21 spinocerebellar ataxia, autosomal recessive 3 unknown SCAR3 spinocerebellar ataxia, autosomal recessive 3 O - 20120622 -9606 85503 MOPCB1 - MCOPCB1|MOPCB MIM:300345 X - Microphthalmia, colobomatous, 1 unknown - - - - 20120622 -9606 85504 BDET - - MIM:605913 1 1q23 Bleeding disorder, east Texas type unknown - - - - 20120622 -9606 85505 ACRPS - - MIM:605967 7 7q36 Acropectoral syndrome unknown - - - - 20120622 -9606 85507 DFNA18 - - HGNC:13268|MIM:606012 3 3q22 deafness, autosomal dominant 18 unknown DFNA18 deafness, autosomal dominant 18 O - 20120622 -9606 85508 SCRT2 FP7030 ZNF898B HGNC:15952|Ensembl:ENSG00000215397|HPRD:15305|Vega:OTTHUMG00000130829 20 20p13 scratch homolog 2, zinc finger protein (Drosophila) protein-coding SCRT2 scratch homolog 2, zinc finger protein (Drosophila) O scratch 2 protein|scratch homolog 2 zinc finger protein|transcriptional repressor scratch 2 20121230 -9606 85509 MBD3L1 - MBD3L HGNC:15774|MIM:607963|Ensembl:ENSG00000170948|HPRD:12138 19 19p13.2 methyl-CpG binding domain protein 3-like 1 protein-coding MBD3L1 methyl-CpG binding domain protein 3-like 1 O MBD3-like protein 1|methyl-CpG-binding domain protein 3-like 1 20121230 -9606 85569 GALP - - HGNC:24840|MIM:611178|Ensembl:ENSG00000197487|HPRD:17027|Vega:OTTHUMG00000181826 19 19q13.43 galanin-like peptide protein-coding GALP galanin-like peptide O alarin|gal-like peptide 20121230 -9606 85824 RPL12P12 - RPL12L3|RPL12_16_1689|dJ999L4.1 HGNC:15951 20 20p11.23 ribosomal protein L12 pseudogene 12 pseudo RPL12P12 ribosomal protein L12 pseudogene 12 O - 20121230 -9606 85865 GTPBP10 UG0751c10 ObgH2 HGNC:25106|MIM:610920|Ensembl:ENSG00000105793|HPRD:14262|Vega:OTTHUMG00000023655 7 7q21.13 GTP-binding protein 10 (putative) protein-coding GTPBP10 GTP-binding protein 10 (putative) O GTP-binding protein 10|protein obg homolog 2 20121230 -9606 86123 YWHAZP5 - - HGNC:30564 10 10q25.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 5 pseudo YWHAZP5 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 5 O - 20121230 -9606 86614 HSFY1 - HSF2L|HSFY HGNC:18568|MIM:400029|Ensembl:ENSG00000172468|HPRD:11850|Vega:OTTHUMG00000041980 Y Yq11.222 heat shock transcription factor, Y-linked 1 protein-coding HSFY1 heat shock transcription factor, Y-linked 1 O heat shock transcription factor 2-like protein|heat shock transcription factor, Y-linked 20121220 -9606 86781 RPS2P7 - RPS2L1|RPS2_27_1706|dJ688G8.1 HGNC:15838 20 20q13.12 ribosomal protein S2 pseudogene 7 pseudo RPS2P7 ribosomal protein S2 pseudogene 7 O - 20121230 -9606 87171 ARPC3P1 - ARPC3B|dJ470L14.3 HGNC:16092 20 20q13.13 actin related protein 2/3 complex, subunit 3 pseudogene 1 pseudo ARPC3P1 actin related protein 2/3 complex, subunit 3 pseudogene 1 O - 20121230 -9606 87178 PNPT1 - COXPD13|DFNB70|OLD35|PNPASE|old-35 HGNC:23166|MIM:610316|Ensembl:ENSG00000138035|HPRD:18493|Vega:OTTHUMG00000129335 2 2p15 polyribonucleotide nucleotidyltransferase 1 protein-coding PNPT1 polyribonucleotide nucleotidyltransferase 1 O 3'-5' RNA exonuclease OLD35|PNPase 1|PNPase old-35|polynucleotide phosphorylase 1|polynucleotide phosphorylase-like protein|polyribonucleotide nucleotidyltransferase 1, mitochondrial 20121230 -9606 87688 RPL7AP50 - RPL7A_23_1048 HGNC:36117 10 10q21.3 ribosomal protein L7a pseudogene 50 pseudo RPL7AP50 ribosomal protein L7a pseudogene 50 O - 20121230 -9606 87769 GGACT RP11-151A6.2 A2LD1 HGNC:25100|MIM:613378|Ensembl:ENSG00000134864 13 13q32.3 gamma-glutamylamine cyclotransferase protein-coding GGACT gamma-glutamylamine cyclotransferase O AIG2-like domain 1|AIG2-like domain-containing protein 1|gamma-glutamylaminecyclotransferase 20121230 -9606 88455 ANKRD13A - ANKRD13|NY-REN-25 HGNC:21268|Ensembl:ENSG00000076513|HPRD:12458|Vega:OTTHUMG00000169314 12 12q24.11 ankyrin repeat domain 13A protein-coding ANKRD13A ankyrin repeat domain 13A O NY-REN-25 antigen|ankyrin repeat domain-containing protein 13A 20121230 -9606 88745 RRP36 HSPC253 C6orf153|dJ20C7.4 HGNC:21374|MIM:613475|Ensembl:ENSG00000124541|HPRD:12859|Vega:OTTHUMG00000014715 6 6p21.1 ribosomal RNA processing 36 homolog (S. cerevisiae) protein-coding RRP36 ribosomal RNA processing 36 homolog (S. cerevisiae) O RNA processing factor|ribosomal RNA processing protein 36 homolog 20121230 -9606 89122 TRIM4 - RNF87 HGNC:16275|Ensembl:ENSG00000146833|HPRD:15556|Vega:OTTHUMG00000156648 7 7q22-q31.1 tripartite motif containing 4 protein-coding TRIM4 tripartite motif containing 4 O RING finger protein 87|tripartite motif protein 4|tripartite motif-containing 4|tripartite motif-containing protein 4 20121230 -9606 89758 C6orf7 - - HGNC:14109 6 6q14 chromosome 6 open reading frame 7 protein-coding C6orf7 chromosome 6 open reading frame 7 O uncharacterized protein LOC89758 20121230 -9606 89760 MRX75 - - HGNC:7309 X Xq24-q26 mental retardation, X-linked 75 unknown MRX75 mental retardation, X-linked 75 O - 20110215 -9606 89761 NUFIP1P - - HGNC:8058 6 6q12 nuclear fragile X mental retardation protein interacting protein 1 pseudogene pseudo NUFIP1P nuclear fragile X mental retardation protein interacting protein 1 pseudogene O - 20121230 -9606 89765 RSPH1 - RSP44|RSPH10A|TSA2|TSGA2 HGNC:12371|MIM:609314|Ensembl:ENSG00000160188|HPRD:11651|Vega:OTTHUMG00000086804 21 21q22.3 radial spoke head 1 homolog (Chlamydomonas) protein-coding RSPH1 radial spoke head 1 homolog (Chlamydomonas) O CT79|cancer/testis antigen 79|h-meichroacidin|male meiotic metaphase chromosome-associated acidic protein|meichroacidin|radial spoke head 1 homolog|testes specific A2 homolog|testes specific gene A2 homolog|testis specific A2 homolog|testis-specific gene A2 protein 20121230 -9606 89766 UMODL1 - - HGNC:12560|MIM:613859|Ensembl:ENSG00000177398|HPRD:08775|HPRD:15610|Vega:OTTHUMG00000086788 21 21q22.3 uromodulin-like 1 protein-coding UMODL1 uromodulin-like 1 O olfactorin 20121230 -9606 89770 IGHV3-30-5 - IGHV3-3|IGHV3305 HGNC:5594|IMGT/GENE-DB:IGHV3-30-5 14 14q32.33 immunoglobulin heavy variable 3-30-5 other IGHV3-30-5 immunoglobulin heavy variable 3-30-5 O - 20120114 -9606 89777 SERPINB12 - YUKOPIN HGNC:14220|Ensembl:ENSG00000166634|HPRD:11548|Vega:OTTHUMG00000132789 18 - serpin peptidase inhibitor, clade B (ovalbumin), member 12 protein-coding SERPINB12 serpin peptidase inhibitor, clade B (ovalbumin), member 12 O serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 12|serpin B12 20121230 -9606 89778 SERPINB11 - EPIPIN|SERPIN11 HGNC:14221|Ensembl:ENSG00000206072|HPRD:11547|Vega:OTTHUMG00000060404 18 - serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene) protein-coding SERPINB11 serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene) O serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11|serpin B11 20121230 -9606 89780 WNT3A - - HGNC:15983|MIM:606359|Ensembl:ENSG00000154342|HPRD:05897|Vega:OTTHUMG00000037593 1 1q42 wingless-type MMTV integration site family, member 3A protein-coding WNT3A wingless-type MMTV integration site family, member 3A O protein Wnt-3a 20121230 -9606 89781 HPS4 CTB-1048E9.4 LE HGNC:15844|MIM:606682|Ensembl:ENSG00000100099|HPRD:05983|Vega:OTTHUMG00000030459 22 22cen-q12.3 Hermansky-Pudlak syndrome 4 protein-coding HPS4 Hermansky-Pudlak syndrome 4 O Hermansky-Pudlak syndrome 4 protein|light-ear protein homolog 20121230 -9606 89782 LMLN - GP63|INV|IX14|MSP HGNC:15991|MIM:609380|Ensembl:ENSG00000185621|HPRD:07023|Vega:OTTHUMG00000155375 3 3q29 leishmanolysin-like (metallopeptidase M8 family) protein-coding LMLN leishmanolysin-like (metallopeptidase M8 family) O invadolysin|leishmanolysin-2|leishmanolysin-like peptidase 20121230 -9606 89790 SIGLEC10 UNQ477/PRO940 PRO940|SIGLEC-10|SLG2 HGNC:15620|MIM:606091|Ensembl:ENSG00000142512|HPRD:07307|Vega:OTTHUMG00000165521 19 19q13.3 sialic acid binding Ig-like lectin 10 protein-coding SIGLEC10 sialic acid binding Ig-like lectin 10 O sialic acid binding Ig-like lectin 10 Ig-like lectin 7|sialic acid-binding Ig-like lectin 10|siglec-like gene 2|siglec-like protein 2 20121230 -9606 89792 GAL3ST3 - GAL3ST-3|GAL3ST2 HGNC:24144|MIM:608234|Ensembl:ENSG00000175229|HPRD:10501|Vega:OTTHUMG00000166667 11 11q13.1 galactose-3-O-sulfotransferase 3 protein-coding GAL3ST3 galactose-3-O-sulfotransferase 3 O beta-galactose-3-O-sulfotransferase 3|gal-beta-1, 3-GalNAc 3'-sulfotransferase 3|galactose 3'-sulfotransferase|galbeta1-3GalNAc 3'-sulfotransferase 3 20121230 -9606 89795 NAV3 - POMFIL1|STEERIN3|unc53H3 HGNC:15998|MIM:611629|Ensembl:ENSG00000067798|HPRD:10114|Vega:OTTHUMG00000170001 12 12q14.3 neuron navigator 3 protein-coding NAV3 neuron navigator 3 O pore membrane and/or filament interacting like protein 1|pore membrane and/or filament-interacting-like protein 1|steerin 3|steerin-3|unc-53 homolog 3 20121230 -9606 89796 NAV1 - POMFIL3|STEERIN1|UNC53H1 HGNC:15989|MIM:611628|Ensembl:ENSG00000134369|HPRD:10113|Vega:OTTHUMG00000035766 1 1q32.3 neuron navigator 1 protein-coding NAV1 neuron navigator 1 O neuron navigator-1|pore membrane and/or filament interacting like protein 3|pore membrane and/or filament-interacting-like protein 3|unc-53 homolog 1 20121230 -9606 89797 NAV2 - HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 HGNC:15997|MIM:607026|Ensembl:ENSG00000166833|HPRD:07385|Vega:OTTHUMG00000151837 11 11p15.1 neuron navigator 2 protein-coding NAV2 neuron navigator 2 O helicase, APC down-regulated 1|pore membrane and/or filament-interacting-like protein 2|retinoic acid inducible gene in neuroblastoma 1|steerin-2|unc-53 homolog 2 20121230 -9606 89801 PPP1R3F - HB2E|R3F HGNC:14944|Ensembl:ENSG00000049769|HPRD:15170|Vega:OTTHUMG00000024139 X Xp11.23 protein phosphatase 1, regulatory subunit 3F protein-coding PPP1R3F protein phosphatase 1, regulatory subunit 3F O protein phosphatase 1 regulatory subunit 3F|protein phosphatase 1, regulatory (inhibitor) subunit 3F 20121230 -9606 89822 KCNK17 UNQ5816/PRO19634 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 HGNC:14465|MIM:607370|Ensembl:ENSG00000124780|HPRD:09566|Vega:OTTHUMG00000014646 6 6p21.1 potassium channel, subfamily K, member 17 protein-coding KCNK17 potassium channel, subfamily K, member 17 O 2P domain potassium channel Talk-2|TWIK-related acid-sensitive K(+) channel 4|TWIK-related alkaline pH-activated K(+) channel 2|acid-sensitive potassium channel protein TASK-4|potassium channel subfamily K member 17 20121230 -9606 89832 CHRFAM7A - CHRNA7|CHRNA7-DR1|D-10 HGNC:15781|MIM:609756|Ensembl:ENSG00000166664|HPRD:18704|Vega:OTTHUMG00000175645 15 15q13.1 CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion protein-coding CHRFAM7A CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion O CHRNA7 (cholinergic receptor, nicotinic, alpha polypeptide 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion|CHRNA7-FAM7A fusion protein|alpha 7 neuronal nicotinic acetylcholine receptor-FAM7A hybrid|alpha-7 nicotinic cholinergic receptor subunit 20121230 -9606 89837 ULK4P3 - D-X|FAM7A3 HGNC:15777 15 15q13.2 unc-51-like kinase 4 (C. elegans) pseudogene 3 pseudo ULK4P3 unc-51-like kinase 4 (C. elegans) pseudogene 3 O - 20121230 -9606 89838 ULK4P1 - D-X|FAM7A1 HGNC:15775 15 15q13.3 unc-51-like kinase 4 (C. elegans) pseudogene 1 pseudo ULK4P1 unc-51-like kinase 4 (C. elegans) pseudogene 1 O - 20121230 -9606 89839 ARHGAP11B - B'-T|FAM7B1 HGNC:15782|Ensembl:ENSG00000187951|Vega:OTTHUMG00000175656 15 15q13.2 Rho GTPase activating protein 11B protein-coding ARHGAP11B Rho GTPase activating protein 11B O GAP (1-8)|family with sequence similarity 7, member B1|rho GTPase-activating protein 11B|rho-type GTPase-activating protein 11B 20121230 -9606 89844 LOC89844 - - - 19 19p13.1 mitochondrial RNA polymerase pseudogene pseudo - - - - 20121230 -9606 89845 ABCC10 RP5-895C5.1 EST182763|MRP7|SIMRP7 HGNC:52|MIM:612509|Ensembl:ENSG00000124574|HPRD:07623|Vega:OTTHUMG00000014733 6 6p21.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 protein-coding ABCC10 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 O ATP-binding cassette sub-family C member 10|multidrug resistance-associated protein 7 20121230 -9606 89846 FGD3 RP11-274J16.4 ZFYVE5 HGNC:16027|Ensembl:ENSG00000127084|HPRD:10957|Vega:OTTHUMG00000021032 9 - FYVE, RhoGEF and PH domain containing 3 protein-coding FGD3 FYVE, RhoGEF and PH domain containing 3 O FGD1 family, member 3|FYVE, RhoGEF and PH domain-containing protein 3|faciogenital dysplasia 3|zinc finger FYVE domain-containing protein 5 20121230 -9606 89848 FCHSD1 UNQ737/PRO1431 NWK2 HGNC:25463|Ensembl:ENSG00000197948|HPRD:13320|Vega:OTTHUMG00000163762 5 5q31.3 FCH and double SH3 domains 1 protein-coding FCHSD1 FCH and double SH3 domains 1 O FCH and double SH3 domains protein 1|nervous wreck homolog 2 20121230 -9606 89849 ATG16L2 - ATG16B|WDR80 HGNC:25464|Ensembl:ENSG00000168010|HPRD:10959|Vega:OTTHUMG00000167961 11 11q13.4 autophagy related 16-like 2 (S. cerevisiae) protein-coding ATG16L2 autophagy related 16-like 2 (S. cerevisiae) O APG16-like 2|ATG16 autophagy related 16-like 2|WD repeat-containing protein 80|autophagy-related protein 16-2 20121230 -9606 89853 MVB12B - C9orf28|FAM125B HGNC:23368|Ensembl:ENSG00000196814|HPRD:12952|Vega:OTTHUMG00000020687 9 9q33.3 multivesicular body subunit 12B protein-coding MVB12B multivesicular body subunit 12B O ESCRT-I complex subunit MVB12B|family with sequence similarity 125, member B 20121230 -9606 89857 KLHL6 - - HGNC:18653|MIM:614214|Ensembl:ENSG00000172578|HPRD:10035|Vega:OTTHUMG00000148673 3 3q27.3 kelch-like 6 (Drosophila) protein-coding KLHL6 kelch-like 6 (Drosophila) O kelch-like protein 6|kelch-like protein KLHL6 20121230 -9606 89858 SIGLEC12 UNQ9215/PRO34042 S2V|SIGLECL1|SLG|Siglec-XII HGNC:15482|MIM:606094|Ensembl:ENSG00000254521|HPRD:16195|Vega:OTTHUMG00000165524 19 19q13.4 sialic acid binding Ig-like lectin 12 (gene/pseudogene) protein-coding SIGLEC12 sialic acid binding Ig-like lectin 12 (gene/pseudogene) O SIGLEC-like 1|sialic acid-binding Ig-like lectin 12|sialic acid-binding Ig-like lectin-like 1 20121230 -9606 89866 SEC16B - LZTR2|PGPR-p117|RGPR|SEC16S HGNC:30301|MIM:612855|Ensembl:ENSG00000120341|HPRD:11491|Vega:OTTHUMG00000167206 1 1q25.2 SEC16 homolog B (S. cerevisiae) protein-coding SEC16B SEC16 homolog B (S. cerevisiae) O RGPR-p117|leucine zipper transcription regulator 2|protein SEC16 homolog B|protein transport protein Sec16B|regucalcin gene promoter region-related protein p117|regucalcin gene promotor region related protein 20121230 -9606 89869 PLCZ1 - NYD-SP27|PLC-zeta-1|PLCzeta HGNC:19218|MIM:608075|Ensembl:ENSG00000139151|HPRD:06996|Vega:OTTHUMG00000168937 12 12p12.3 phospholipase C, zeta 1 protein-coding PLCZ1 phospholipase C, zeta 1 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1|PI-phospholipase C zeta 1|phosphoinositide phospholipase C-zeta-1|testis-development related NYD-SP27 20121230 -9606 89870 TRIM15 DAAP-200B17.1 RNF93|ZNF178|ZNFB7 HGNC:16284|Ensembl:ENSG00000204610|HPRD:15551|Vega:OTTHUMG00000031031 6 6p21.3 tripartite motif containing 15 protein-coding TRIM15 tripartite motif containing 15 O RING finger protein 93|tripartite motif-containing 15|tripartite motif-containing protein 15|zinc finger protein 178|zinc finger protein B7 20121230 -9606 89872 AQP10 - AQPA_HUMAN HGNC:16029|MIM:606578|Ensembl:ENSG00000143595|HPRD:07361|Vega:OTTHUMG00000035980 1 1q21.3 aquaporin 10 protein-coding AQP10 aquaporin 10 O AQP-10|aquaglyceroporin-10|aquaporin-10|small intestine aquaporin 20121230 -9606 89873 PPH2 - - HGNC:15733 2 2q31-q32 primary pulmonary hypertension 2 unknown PPH2 primary pulmonary hypertension 2 O - 20110215 -9606 89874 SLC25A21 - ODC|ODC1 HGNC:14411|MIM:607571|Ensembl:ENSG00000183032|HPRD:12124|Vega:OTTHUMG00000140250 14 14q11.2 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 protein-coding SLC25A21 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 O mitochondrial 2-oxodicarboxylate carrier|oxodicarboxylate carrier|solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21|solute carrier family 25 member 21 20121230 -9606 89876 MAATS1 - AAT1|AAT1alpha|C3orf15|SPATA26 HGNC:24010|MIM:609910|Ensembl:ENSG00000183833|HPRD:10782|Vega:OTTHUMG00000159422 3 3q12-q13.3 MYCBP-associated, testis expressed 1 protein-coding MAATS1 MYCBP-associated, testis expressed 1 O AAT-1|AAT1-alpha|AMY-1-associating protein expressed in testis 1|MYCBP-binding protein|MYCBP/AMY-1-associated, testis expressed 1|spermatogenesis associated 26 20121230 -9606 89882 TPD52L3 - NYDSP25|hD55 HGNC:23382|Ensembl:ENSG00000170777|HPRD:14864|Vega:OTTHUMG00000019518 9 9p24.1 tumor protein D52-like 3 protein-coding TPD52L3 tumor protein D52-like 3 O protein kinase NYD-SP25|testis development protein NYD-SP25|tumor protein D55 20121230 -9606 89883 OR6W1P - OR6W1|sdolf HGNC:15091 7 7q34 olfactory receptor, family 6, subfamily W, member 1 pseudogene pseudo OR6W1P olfactory receptor, family 6, subfamily W, member 1 pseudogene O - 20121230 -9606 89884 LHX4 - CPHD4 HGNC:21734|MIM:602146|Ensembl:ENSG00000121454|HPRD:03686|Vega:OTTHUMG00000035115 1 1q25.2 LIM homeobox 4 protein-coding LHX4 LIM homeobox 4 O LIM homeobox protein 4|LIM/homeobox protein Lhx4 20121230 -9606 89885 FATE1 - CT43|FATE HGNC:24683|MIM:300450|Ensembl:ENSG00000147378|HPRD:02346|Vega:OTTHUMG00000024172 X Xq28 fetal and adult testis expressed 1 protein-coding FATE1 fetal and adult testis expressed 1 O BJ-HCC-2 antigen|cancer/testis antigen 43|fetal and adult testis expressed transcript protein|fetal and adult testis-expressed transcript protein|tumor antigen BJ-HCC-2 20121230 -9606 89886 SLAMF9 RP11-48O20.3 CD2F-10|CD2F10|CD84-H1|CD84H1|SF2001 HGNC:18430|MIM:608589|Ensembl:ENSG00000162723|HPRD:12263|Vega:OTTHUMG00000024074 1 1q23.2 SLAM family member 9 protein-coding SLAMF9 SLAM family member 9 O CD2 family member 10|CD84 homolog 1|cluster of differentiation 2 antigen family member 10|cluster of differentiation 84 homolog 1|signaling lymphocytic activation molecule family member 2001|signaling lymphocytic activation molecule family member 9 20121230 -9606 89887 ZNF628 - ZEC|Zfp628 HGNC:28054|MIM:610671|HPRD:18317 19 19q13.42 zinc finger protein 628 protein-coding ZNF628 zinc finger protein 628 O zinc finger protein Zec 20121230 -9606 89890 KBTBD6 - - HGNC:25340|Ensembl:ENSG00000165572|HPRD:13758|Vega:OTTHUMG00000016786 13 13q14.11 kelch repeat and BTB (POZ) domain containing 6 protein-coding KBTBD6 kelch repeat and BTB (POZ) domain containing 6 O kelch repeat and BTB domain-containing protein 6 20121230 -9606 89891 WDR34 RP11-216B9.5 bA216B9.3 HGNC:28296|MIM:613363|Ensembl:ENSG00000119333|HPRD:15666|Vega:OTTHUMG00000020750 9 9q34.11 WD repeat domain 34 protein-coding WDR34 WD repeat domain 34 O WD repeat-containing protein 34 20121230 -9606 89894 TMEM116 - - HGNC:25084|Ensembl:ENSG00000198270|HPRD:11275|Vega:OTTHUMG00000169606 12 12q24.13 transmembrane protein 116 protein-coding TMEM116 transmembrane protein 116 O - 20121230 -9606 89910 UBE3B - - HGNC:13478|MIM:608047|Ensembl:ENSG00000151148|HPRD:06993|Vega:OTTHUMG00000169254 12 12q24.11 ubiquitin protein ligase E3B protein-coding UBE3B ubiquitin protein ligase E3B O ubiquitin-protein ligase E3B 20121230 -9606 89927 C16orf45 - - HGNC:19213|Ensembl:ENSG00000166780|HPRD:12382|Vega:OTTHUMG00000129883 16 16p13.11 chromosome 16 open reading frame 45 protein-coding C16orf45 chromosome 16 open reading frame 45 O uncharacterized protein C16orf45 20121230 -9606 89932 PAPLN UNQ2420/PRO4977 - HGNC:19262|Ensembl:ENSG00000100767|HPRD:15099|Vega:OTTHUMG00000171366 14 14q24.2 papilin, proteoglycan-like sulfated glycoprotein protein-coding PAPLN papilin, proteoglycan-like sulfated glycoprotein O papilin 20121230 -9606 89941 RHOT2 LA16c-313D11.4 ARHT2|C16orf39|MIRO-2|MIRO2|RASL HGNC:21169|MIM:613889|Ensembl:ENSG00000140983|HPRD:15248|Vega:OTTHUMG00000121139 16 16p13.3 ras homolog family member T2 protein-coding RHOT2 ras homolog family member T2 O mitochondrial Rho (MIRO) GTPase 2|mitochondrial Rho GTPase 2|ras homolog gene family, member T2 20121230 -9606 89944 GLB1L2 MSTP014 MST114|MSTP114 HGNC:25129|Ensembl:ENSG00000149328|HPRD:14265|Vega:OTTHUMG00000167179 11 11q25 galactosidase, beta 1-like 2 protein-coding GLB1L2 galactosidase, beta 1-like 2 O beta-galactosidase-1-like protein 2 20121230 -9606 89953 KLC4 - KNSL8|bA387M24.3 HGNC:21624|Ensembl:ENSG00000137171|HPRD:13932|Vega:OTTHUMG00000014720 6 6p21.1 kinesin light chain 4 protein-coding KLC4 kinesin light chain 4 O KLC 4|kinesin-like 8|kinesin-like protein 8 20121230 -9606 89958 SAPCD2 - C9orf140|p42.3 HGNC:28055|MIM:612057|Ensembl:ENSG00000186193|HPRD:12943|Vega:OTTHUMG00000020961 9 9q34.3 suppressor APC domain containing 2 protein-coding SAPCD2 suppressor APC domain containing 2 O 2010317E24Rik|TS/MDEP|protein C9orf140|suppressor APC domain-containing protein 2|tumor specificity and mitosis phase-dependent expression protein 20121230 -9606 89970 RSPRY1 UNQ328/PRO444 - HGNC:29420|Ensembl:ENSG00000159579|HPRD:13908|Vega:OTTHUMG00000133462 16 16q13 ring finger and SPRY domain containing 1 protein-coding RSPRY1 ring finger and SPRY domain containing 1 O RING finger and SPRY domain-containing protein 1 20121230 -9606 89978 ATPBD4 - - HGNC:30543|Ensembl:ENSG00000134146|HPRD:14443|Vega:OTTHUMG00000129759 15 15q14 ATP binding domain 4 protein-coding ATPBD4 ATP binding domain 4 O ATP-binding domain-containing protein 4 20121230 -9606 90007 MIDN - - HGNC:16298|MIM:606700|Ensembl:ENSG00000167470|HPRD:16230|Vega:OTTHUMG00000180144 19 19p13.3 midnolin protein-coding MIDN midnolin O midbrain nucleolar protein 20121230 -9606 90011 KIR3DX1 XXbac-BCX85G21.1 KIR3DL0|LENG12 HGNC:25043|HPRD:13328 19 19q13.42 killer cell immunoglobulin-like receptor, three domains, X1 pseudo KIR3DX1 killer cell immunoglobulin-like receptor, three domains, X1 O - 20121230 -9606 90019 SYT8 - - HGNC:19264|MIM:607719|Ensembl:ENSG00000149043|HPRD:09655|Vega:OTTHUMG00000009026 11 11p15.5 synaptotagmin VIII protein-coding SYT8 synaptotagmin VIII O synaptotagmin 8|synaptotagmin-8|sytVIII 20121230 -9606 90024 FLJ20021 - - - 4 4q24 uncharacterized LOC90024 miscRNA - - - - 20121230 -9606 90025 UBE3D RP4-751H9.1 C6orf157|H10BH|UBE2CBP|YJR141W HGNC:21381|MIM:612495|Ensembl:ENSG00000118420|HPRD:12861|Vega:OTTHUMG00000015108 6 6q14.1 ubiquitin protein ligase E3D protein-coding UBE3D ubiquitin protein ligase E3D O E3 ubiquitin-protein ligase E3D|UBCH10 binding protein with a hect-like domain|ubcH10-binding protein with a HECT-like domain|ubiquitin-conjugating enzyme E2C binding protein|ubiquitin-conjugating enzyme E2C-binding protein 20121230 -9606 90050 FAM181A HSD31 C14orf152 HGNC:20491|Ensembl:ENSG00000140067|HPRD:12636|Vega:OTTHUMG00000171297 14 14q32.12 family with sequence similarity 181, member A protein-coding FAM181A family with sequence similarity 181, member A O protein FAM181A 20121230 -9606 90060 CCDC120 JM11 - HGNC:28910|Ensembl:ENSG00000147144|HPRD:06595|Vega:OTTHUMG00000021509 X Xp11.23 coiled-coil domain containing 120 protein-coding CCDC120 coiled-coil domain containing 120 O coiled-coil domain-containing protein 120 20121230 -9606 90070 LACRT - - HGNC:16430|MIM:607360|Ensembl:ENSG00000135413|HPRD:06302|Vega:OTTHUMG00000169936 12 12q13 lacritin protein-coding LACRT lacritin O extracellular glycoprotein lacritin 20121230 -9606 90075 ZNF30 - KOX28 HGNC:13090|Ensembl:ENSG00000168661|HPRD:15763 19 19q13.11 zinc finger protein 30 protein-coding ZNF30 zinc finger protein 30 O zinc finger protein 30 (KOX 28)|zinc finger protein KOX28 20121230 -9606 90102 PHLDB2 - LL5b|LL5beta HGNC:29573|MIM:610298|Ensembl:ENSG00000144824|HPRD:06611|Vega:OTTHUMG00000159282 3 3q13.2 pleckstrin homology-like domain, family B, member 2 protein-coding PHLDB2 pleckstrin homology-like domain, family B, member 2 O LL5 beta|pleckstrin homology-like domain family B member 2|protein LL5-beta 20121230 -9606 90113 VWA5B2 - - HGNC:25144|Ensembl:ENSG00000145198|Vega:OTTHUMG00000156820 3 3q27.1 von Willebrand factor A domain containing 5B2 protein-coding VWA5B2 von Willebrand factor A domain containing 5B2 O von Willebrand factor A domain-containing protein 5B2 20121230 -9606 90120 C9orf69 - bA83N9.1 HGNC:31009|Ensembl:ENSG00000238227|Vega:OTTHUMG00000020922 9 9q34.3 chromosome 9 open reading frame 69 protein-coding C9orf69 chromosome 9 open reading frame 69 O uncharacterized protein LOC90120 20121230 -9606 90121 TSR2 RP1-112K5.2 DT1P1A10|WGG1 HGNC:25455|Ensembl:ENSG00000158526|HPRD:06493|Vega:OTTHUMG00000021628 X Xp11.22 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) protein-coding TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) O WGG motif containing 1|pre-rRNA-processing protein TSR2 homolog 20121230 -9606 90133 KRT8P12 - KRT8L2 HGNC:28057 3 3q25.33 keratin 8 pseudogene 12 pseudo KRT8P12 keratin 8 pseudogene 12 O - 20121230 -9606 90134 KCNH7 - ERG3|HERG3|Kv11.3 HGNC:18863|MIM:608169|Ensembl:ENSG00000184611|HPRD:16295|Vega:OTTHUMG00000132069 2 2q24.2 potassium voltage-gated channel, subfamily H (eag-related), member 7 protein-coding KCNH7 potassium voltage-gated channel, subfamily H (eag-related), member 7 O ERG-3|eag related protein 3|eag-related protein 3|ether-a-go-go related gene potassium channel 3|ether-a-go-go-related gene potassium channel 3|ether-a-go-go-related protein 3|potassium channel subunit HERG-3|potassium voltage-gated channel subfamily H member 7|voltage-gated potassium channel subunit Kv11.3 20121230 -9606 90135 BTBD6 - BDPL HGNC:19897|Ensembl:ENSG00000184887|HPRD:12540|Vega:OTTHUMG00000029887 14 14q32 BTB (POZ) domain containing 6 protein-coding BTBD6 BTB (POZ) domain containing 6 O BTB domain protein BDPL|BTB/POZ domain-containing protein 6|glucocorticoid receptor AF-1 coactivator-1|lens BTB domain protein 20121230 -9606 90139 TSPAN18 UNQ3042/PRO9858 TSPAN HGNC:20660|Ensembl:ENSG00000157570|HPRD:17435|Vega:OTTHUMG00000163883 11 11p11.2 tetraspanin 18 protein-coding TSPAN18 tetraspanin 18 O tetraspanin-18|tspan-18 20121230 -9606 90141 EFCAB11 - C14orf143 HGNC:20357|Ensembl:ENSG00000140025|HPRD:16609|Vega:OTTHUMG00000148671 14 14q32.11 EF-hand calcium binding domain 11 protein-coding EFCAB11 EF-hand calcium binding domain 11 O EF-hand calcium-binding domain-containing protein 11|EF-hand domain-containing protein C14orf143 20121230 -9606 90161 HS6ST2 RP3-435D1.3 - HGNC:19133|MIM:300545|Ensembl:ENSG00000171004|HPRD:06590|Vega:OTTHUMG00000022430 X Xq26.2 heparan sulfate 6-O-sulfotransferase 2 protein-coding HS6ST2 heparan sulfate 6-O-sulfotransferase 2 O HS6ST-2|heparan-sulfate 6-O-sulfotransferase 2 20121230 -9606 90167 FRMD7 RP6-213H19.2 NYS|NYS1|XIPAN HGNC:8079|MIM:300628|Ensembl:ENSG00000165694|HPRD:06624|Vega:OTTHUMG00000022421 X Xq26.2 FERM domain containing 7 protein-coding FRMD7 FERM domain containing 7 O FERM domain-containing protein 7 20121230 -9606 90187 EMILIN3 RP4-620E11.1 C20orf130|EMILIN5|dJ620E11.4 HGNC:16123|MIM:608929|Ensembl:ENSG00000183798|HPRD:12335|Vega:OTTHUMG00000046304 20 20q12 elastin microfibril interfacer 3 protein-coding EMILIN3 elastin microfibril interfacer 3 O EMILIN-3|EMILIN-5|elastin microfibril interface-located protein 3|elastin microfibril interface-located protein 5|elastin microfibril interfacer 5 20121230 -9606 90193 RPL7P6 - RPL7_20_1216 HGNC:32430 12 12p12.3 ribosomal protein L7 pseudogene 6 pseudo RPL7P6 ribosomal protein L7 pseudogene 6 O - 20121230 -9606 90196 SYS1 RP3-453C12.12-005 C20orf169|dJ453C12.4|dJ453C12.4.1 HGNC:16162|MIM:612979|Ensembl:ENSG00000204070|Vega:OTTHUMG00000032579 20 20q13.12 SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) protein-coding SYS1 SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) O protein SYS1 homolog 20121230 -9606 90199 WFDC8 RP3-461P17.3 C20orf170|WAP8|dJ461P17.1 HGNC:16163|Ensembl:ENSG00000158901|HPRD:11685|Vega:OTTHUMG00000046342 20 20q13.12 WAP four-disulfide core domain 8 protein-coding WFDC8 WAP four-disulfide core domain 8 O WAP four-disulfide core domain protein 8|WAP motif protein 1|protease inhibitor WAP8|putative protease inhibitor WAP8 20121230 -9606 90203 SNX21 RP3-337O18.7 C20orf161|PP3993|SNX-L|dJ337O18.4 HGNC:16154|Ensembl:ENSG00000124104|HPRD:16641|Vega:OTTHUMG00000032624 20 20q13.12 sorting nexin family member 21 protein-coding SNX21 sorting nexin family member 21 O sorting nexin 21|sorting nexin L|sorting nexin-21 20121230 -9606 90204 ZSWIM1 - C20orf162 HGNC:16155|Ensembl:ENSG00000168612|HPRD:15901|Vega:OTTHUMG00000074023 20 20q13.12 zinc finger, SWIM-type containing 1 protein-coding ZSWIM1 zinc finger, SWIM-type containing 1 O zinc finger SWIM domain-containing protein 1|zinc finger, SWIM domain containing 1 20121230 -9606 90226 UCN2 - SRP|UCN-II|UCNI|UR|URP HGNC:18414|MIM:605902|Ensembl:ENSG00000145040|HPRD:16171|Vega:OTTHUMG00000133533 3 3p21.3 urocortin 2 protein-coding UCN2 urocortin 2 O stresscopin-related peptide|ucn II|urocortin II|urocortin-2|urocortin-related peptide 20121230 -9606 90231 KIAA2013 RP5-1077B9.1 - HGNC:28513|Ensembl:ENSG00000116685|HPRD:14576|Vega:OTTHUMG00000002391 1 1p36.22 KIAA2013 protein-coding KIAA2013 KIAA2013 O uncharacterized protein KIAA2013 20121230 -9606 90233 ZNF551 - - HGNC:25108|Ensembl:ENSG00000204519|HPRD:11727 19 19q13.43 zinc finger protein 551 protein-coding ZNF551 zinc finger protein 551 O KOX 23 protein (56 AA)|zinc finger protein KOX23 20121230 -9606 90246 LOC90246 - - - 3 3q21.3 uncharacterized LOC90246 miscRNA - - - - 20121230 -9606 90249 UNC5A - UNC5H1 HGNC:12567|MIM:607869|Ensembl:ENSG00000113763|Vega:OTTHUMG00000163225 5 5q35.2 unc-5 homolog A (C. elegans) protein-coding UNC5A unc-5 homolog A (C. elegans) O netrin receptor UNC5A|netrin receptor Unc5h1|protein unc-5 homolog 1|protein unc-5 homolog A|unc-5 homolog 1|unc5 (C.elegans homolog) a 20121230 -9606 90268 FAM105B - - HGNC:25118|Ensembl:ENSG00000154124|HPRD:14266|Vega:OTTHUMG00000161762 5 5p15.2 family with sequence similarity 105, member B protein-coding FAM105B family with sequence similarity 105, member B O protein FAM105B 20121230 -9606 90271 LINC00263 - C10orf75|NCRNA00263 HGNC:28060 10 10q24.31 long intergenic non-protein coding RNA 263 miscRNA LINC00263 long intergenic non-protein coding RNA 263 O - 20121230 -9606 90273 CEACAM21 UNQ3098/PRO10075 CEACAM3|R29124_1 HGNC:28834|Ensembl:ENSG00000007129|HPRD:10179|Vega:OTTHUMG00000151062 19 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 21 protein-coding CEACAM21 carcinoembryonic antigen-related cell adhesion molecule 21 O - 20121230 -9606 90288 EFCAB12 - C3orf25 HGNC:28061|Ensembl:ENSG00000172771|HPRD:11276|Vega:OTTHUMG00000159464 3 3q21.3 EF-hand calcium binding domain 12 protein-coding EFCAB12 EF-hand calcium binding domain 12 O EF-hand calcium-binding domain-containing protein 12|EF-hand domain-containing protein C3orf25 20121230 -9606 90293 KLHL13 - BKLHD2 HGNC:22931|MIM:300655|Ensembl:ENSG00000003096|HPRD:06461|Vega:OTTHUMG00000022252 X Xq23-q24 kelch-like 13 (Drosophila) protein-coding KLHL13 kelch-like 13 (Drosophila) O BTB and kelch domain containing 2|kelch-like protein 13 20121230 -9606 90313 TP53I13 - DSCP1 HGNC:25102|Ensembl:ENSG00000167543|HPRD:14267|Vega:OTTHUMG00000179723 17 17q11.2 tumor protein p53 inducible protein 13 protein-coding TP53I13 tumor protein p53 inducible protein 13 O damage-stimulated cytoplasmic protein 1|tumor protein p53-inducible protein 13 20121230 -9606 90316 TGIF2LX - TGIFLX HGNC:18570|MIM:300411|Ensembl:ENSG00000153779|HPRD:02328|Vega:OTTHUMG00000021954 X Xq21.31 TGFB-induced factor homeobox 2-like, X-linked protein-coding TGIF2LX TGFB-induced factor homeobox 2-like, X-linked O TGF-beta-induced transcription factor 2-like protein|TGFB-induced factor 2-like protein, X-linked|TGFB-induced factor 2-like, X-linked|TGIF-like on the X|homeobox protein TGIF2LX 20121230 -9606 90317 ZNF616 - - HGNC:28062|Ensembl:ENSG00000204611|HPRD:15876 19 19q13.41 zinc finger protein 616 protein-coding ZNF616 zinc finger protein 616 O - 20121230 -9606 90321 ZNF766 - - HGNC:28063|Ensembl:ENSG00000196214|HPRD:14268 19 19q13.41 zinc finger protein 766 protein-coding ZNF766 zinc finger protein 766 O - 20121230 -9606 90324 CCDC97 - - HGNC:28289|Ensembl:ENSG00000142039|HPRD:14467 19 19q13.2 coiled-coil domain containing 97 protein-coding CCDC97 coiled-coil domain containing 97 O coiled-coil domain-containing protein 97 20121230 -9606 90326 THAP3 - - HGNC:20855|MIM:612532|Ensembl:ENSG00000041988|HPRD:18178|Vega:OTTHUMG00000001440 1 1p36.31 THAP domain containing, apoptosis associated protein 3 protein-coding THAP3 THAP domain containing, apoptosis associated protein 3 O THAP domain-containing protein 3 20121230 -9606 90332 EXOC3L2 - XTP7 HGNC:30162|Ensembl:ENSG00000130201|HPRD:10311|Vega:OTTHUMG00000155018 19 19q13.32 exocyst complex component 3-like 2 protein-coding EXOC3L2 exocyst complex component 3-like 2 O HBV X-transactivated gene 7 protein|HBV XAg-transactivated protein 7|exocyst complex component 3-like protein 2|protein 7 transactivated by hepatitis B virus X antigen (HBxAg) 20121230 -9606 90333 ZNF468 - - HGNC:33105|Ensembl:ENSG00000204604|HPRD:18344 19 19q13.41 zinc finger protein 468 protein-coding ZNF468 zinc finger protein 468 O zinc finger protein ZNF468 20121230 -9606 90338 ZNF160 - F11|HKr18|HZF5|KR18 HGNC:12948|MIM:600398|Ensembl:ENSG00000170949|HPRD:11856 19 19q13.42 zinc finger protein 160 protein-coding ZNF160 zinc finger protein 160 O KRAB zinc finger protein KR18|zinc finger protein 5|zinc finger protein HZF5|zinc finger protein Kr18 20121230 -9606 90342 FER1L5 hCG_1810857 - HGNC:19044 2 2q11.2 fer-1-like 5 (C. elegans) protein-coding FER1L5 fer-1-like 5 (C. elegans) O fer-1-like protein 5 20121230 -9606 90352 MAGOH3P - MAGOHP|MAGOHP1 HGNC:20020 14 14q24.1 mago-nashi homolog 2, proliferation-associated (Drosophila), pseudogene pseudo MAGOH3P mago-nashi homolog 2, proliferation-associated (Drosophila), pseudogene O - 20121230 -9606 90353 CTU1 - ATPBD3|NCS6 HGNC:29590|MIM:612694|Ensembl:ENSG00000142544|HPRD:14270 19 19q13.41 cytosolic thiouridylase subunit 1 homolog (S. pombe) protein-coding CTU1 cytosolic thiouridylase subunit 1 homolog (S. pombe) O ATP binding domain 3|ATP-binding domain-containing protein 3|cancer-associated gene protein|cancer-associated protein|cytoplasmic tRNA 2-thiolation protein 1|cytoplasmic tRNA adenylyltransferase 1 20121230 -9606 90355 C5orf30 - - HGNC:25052|Ensembl:ENSG00000181751|HPRD:12383|Vega:OTTHUMG00000128738 5 5q21.1 chromosome 5 open reading frame 30 protein-coding C5orf30 chromosome 5 open reading frame 30 O UNC119-binding protein C5orf30|UPF0684 protein C5orf30 20121230 -9606 90362 FAM110B - C8orf72 HGNC:28587|MIM:611394|Ensembl:ENSG00000169122|HPRD:14609|Vega:OTTHUMG00000164282 8 8q12.1 family with sequence similarity 110, member B protein-coding FAM110B family with sequence similarity 110, member B O protein FAM110B 20121230 -9606 90378 SAMD1 - - HGNC:17958|Ensembl:ENSG00000141858|HPRD:18011|Vega:OTTHUMG00000166628 19 19p13.12 sterile alpha motif domain containing 1 protein-coding SAMD1 sterile alpha motif domain containing 1 O SAM domain containing 1|atherin|sterile alpha motif domain-containing protein 1 20121230 -9606 90379 DCAF15 - C19orf72 HGNC:25095|Ensembl:ENSG00000132017|Vega:OTTHUMG00000181882 19 19p13.12 DDB1 and CUL4 associated factor 15 protein-coding DCAF15 DDB1 and CUL4 associated factor 15 O DDB1- and CUL4-associated factor 15 20121230 -9606 90381 TICRR - C15orf42|SLD3|Treslin HGNC:28704|MIM:613298|Ensembl:ENSG00000140534|HPRD:11357|Vega:OTTHUMG00000149648 15 15q26.1 TOPBP1-interacting checkpoint and replication regulator protein-coding TICRR TOPBP1-interacting checkpoint and replication regulator O SLD3 homolog|topBP1-interacting replication-stimulating protein|topBP1-interacting, replication-stimulating protein|treslin 20121230 -9606 90390 MED30 - MED30S|THRAP6|TRAP25 HGNC:23032|MIM:610237|Ensembl:ENSG00000164758|HPRD:11631|Vega:OTTHUMG00000164920 8 8q24.11 mediator complex subunit 30 protein-coding MED30 mediator complex subunit 30 O TRAP/Mediator complex component TRAP25|mediator of RNA polymerase II transcription subunit 30|putative mediator of RNA polymerase II transcription subunit 30|thyroid hormone receptor associated protein 6|thyroid hormone receptor-associated protein 6|thyroid hormone receptor-associated protein complex 25 kDa component 20121230 -9606 90407 TMEM41A UNQ168/PRO194 2900010K02Rik HGNC:30544|Ensembl:ENSG00000163900|HPRD:15539|Vega:OTTHUMG00000156660 3 3q27.2 transmembrane protein 41A protein-coding TMEM41A transmembrane protein 41A O - 20121230 -9606 90410 IFT20 - - HGNC:30989|MIM:614394|Ensembl:ENSG00000109083|HPRD:17137|Vega:OTTHUMG00000179412 17 17q11.2 intraflagellar transport 20 homolog (Chlamydomonas) protein-coding IFT20 intraflagellar transport 20 homolog (Chlamydomonas) O intraflagellar transport protein 20 homolog|intraflagellar transport protein IFT20 20121230 -9606 90411 MCFD2 - F5F8D|F5F8D2|LMAN1IP|SDNSF HGNC:18451|MIM:607788|Ensembl:ENSG00000180398|HPRD:09693|Vega:OTTHUMG00000153100 2 2p21 multiple coagulation factor deficiency 2 protein-coding MCFD2 multiple coagulation factor deficiency 2 O multiple coagulation factor deficiency protein 2|neural stem cell derived neuronal survival protein|neural stem cell-derived neuronal survival protein 20121230 -9606 90416 C15orf57 - CCDC32 HGNC:28295|Ensembl:ENSG00000128891|HPRD:14473|Vega:OTTHUMG00000129993 15 15q15.1 chromosome 15 open reading frame 57 protein-coding C15orf57 chromosome 15 open reading frame 57 O coiled-coil domain containing 32|uncharacterized protein C15orf57 20121230 -9606 90417 KNSTRN HSD11 C15orf23|SKAP|TRAF4AF1 HGNC:30767|MIM:614718|Ensembl:ENSG00000128944|HPRD:12669|Vega:OTTHUMG00000172454 15 15q15.1 kinetochore-localized astrin/SPAG5 binding protein protein-coding KNSTRN kinetochore-localized astrin/SPAG5 binding protein O TRAF4 associated factor 1|TRAF4-associated factor 1|kinastrin|kinetochore-localized astrin-binding protein|putative TRAF4-associated factor 1|small kinetochore associated protein|small kinetochore-associated protein|small kinetochore-associated protein, kinetochore-localized astrin-binding protein, TRAF4 associated factor 1 20121230 -9606 90423 ATP6V1E2 - ATP6E1|ATP6EL2|ATP6V1EL2|VMA4 HGNC:18125|Ensembl:ENSG00000250565|HPRD:16525|Vega:OTTHUMG00000128819 2 2p21 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 protein-coding ATP6V1E2 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 O V-ATPase subunit E 2|V-type proton ATPase subunit E 2|vacuolar proton pump subunit E 2|vacuolar-type proton-translocating ATPase subunit E1 20121230 -9606 90427 BMF - - HGNC:24132|MIM:606266|Ensembl:ENSG00000104081|HPRD:05881|Vega:OTTHUMG00000129875 15 15q14 Bcl2 modifying factor protein-coding BMF Bcl2 modifying factor O bcl-2-modifying factor 20121230 -9606 90441 ZNF622 - ZPR9 HGNC:30958|MIM:608694|Ensembl:ENSG00000173545|HPRD:12278|Vega:OTTHUMG00000090567 5 5p15.1 zinc finger protein 622 protein-coding ZNF622 zinc finger protein 622 O zinc finger-like protein 9 20121230 -9606 90459 ERI1 - 3'HEXO|HEXO|THEX1 HGNC:23994|MIM:608739|Ensembl:ENSG00000104626|HPRD:11784|Vega:OTTHUMG00000129328 8 8p23.1 exoribonuclease 1 protein-coding ERI1 exoribonuclease 1 O 3' exoribonuclease|3'-5' exonuclease ERI1|3'-5' exoribonuclease 1|Eri-1 homolog|enhanced RNAi three prime mRNA exonuclease homolog 1|histone mRNA 3' end-specific exonuclease|histone mRNA 3'-end-specific exoribonuclease|histone mRNA 3'-exonuclease 1|protein 3'hExo|three prime histone mRNA exonuclease 1|three prime mRNA exonuclease 1 20121230 -9606 90462 LOC90462 - - HPRD:15870 12 12q24.33 zinc finger protein 605-like unknown - - - - 20121209 -9606 90480 GADD45GIP1 - CKBBP2|CRIF1|PLINP|PLINP-1|PRG6|Plinp1 HGNC:29996|MIM:605162|Ensembl:ENSG00000179271|HPRD:05519|Vega:OTTHUMG00000180724 19 19p13.2 growth arrest and DNA-damage-inducible, gamma interacting protein 1 protein-coding GADD45GIP1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 O CKII beta binding protein 2|CKII beta-associating protein|CR6 interacting factor 1|growth arrest and DNA damage-inducible proteins-interacting protein 1|growth arrest- and DNA damage-inducible GADD45G-interacting protein|p53-responsive gene 6 protein|papillomavirus L2 interacting nuclear protein 1 20121230 -9606 90485 ZNF835 - BC37295_3 HGNC:34332|Ensembl:ENSG00000127903|HPRD:12521 19 19q13.43 zinc finger protein 835 protein-coding ZNF835 zinc finger protein 835 O - 20121230 -9606 90488 C12orf23 - - HGNC:28281|Ensembl:ENSG00000151135|HPRD:14462|Vega:OTTHUMG00000170014 12 12q23.3 chromosome 12 open reading frame 23 protein-coding C12orf23 chromosome 12 open reading frame 23 O UPF0444 transmembrane protein C12orf23 20121230 -9606 90499 LOC90499 - - - 2 2q11.1 uncharacterized LOC90499 miscRNA - - - - 20121230 -9606 90506 LRRC46 - - HGNC:25047|Ensembl:ENSG00000141294|HPRD:08320|Vega:OTTHUMG00000178289 17 17q21.32 leucine rich repeat containing 46 protein-coding LRRC46 leucine rich repeat containing 46 O leucine-rich repeat-containing protein 46 20121230 -9606 90507 SCRN2 - Ses2 HGNC:30381|MIM:614966|Ensembl:ENSG00000141295|HPRD:10213|Vega:OTTHUMG00000178290 17 17q21.32 secernin 2 protein-coding SCRN2 secernin 2 O secernin-2 20121230 -9606 90522 YIF1B hCG_1785221 FinGER8 HGNC:30511|Ensembl:ENSG00000167645|HPRD:11277|Vega:OTTHUMG00000182324 19 19q13.2 Yip1 interacting factor homolog B (S. cerevisiae) protein-coding YIF1B Yip1 interacting factor homolog B (S. cerevisiae) O YIP1-interacting factor homolog B|protein YIF1B 20121230 -9606 90523 MLIP RP11-642N5.1 C6orf142 HGNC:21355|MIM:614106|Ensembl:ENSG00000146147|HPRD:12853|Vega:OTTHUMG00000014891 6 6p12.1 muscular LMNA-interacting protein protein-coding MLIP muscular LMNA-interacting protein O muscle-enriched A-type lamin interacting protein|muscular-enriched A-type laminin-interacting protein 20121230 -9606 90525 SHF - - HGNC:25116|Ensembl:ENSG00000138606|HPRD:14272|Vega:OTTHUMG00000131353 15 15q21.1 Src homology 2 domain containing F protein-coding SHF Src homology 2 domain containing F O SH2 domain-containing adapter protein F 20121230 -9606 90527 DUOXA1 - NIP|NUMBIP|mol HGNC:26507|MIM:612771|Ensembl:ENSG00000140254|HPRD:14829|Vega:OTTHUMG00000131352 15 15q21.1 dual oxidase maturation factor 1 protein-coding DUOXA1 dual oxidase maturation factor 1 O dual oxidase activator 1|dual oxidase maturation factor 1 alpha|dual oxidase maturation factor 1 beta|dual oxidase maturation factor 1 delta|dual oxidase maturation factor 1 gamma|homolog of Drosophila Numb-interacting protein|numb-interacting protein 20121230 -9606 90529 STPG1 RP3-462O23.2 C1orf201|MAPO2 HGNC:28070|Ensembl:ENSG00000001460|HPRD:14273|Vega:OTTHUMG00000003297 1 1p36.11 sperm-tail PG-rich repeat containing 1 protein-coding STPG1 sperm-tail PG-rich repeat containing 1 O O6-methylguanine-induced apoptosis 2|UPF0490 protein C1orf201|sperm-tail PG-rich repeat-containing protein 1 20121230 -9606 90550 MCU - C10orf42|CCDC109A HGNC:23526|MIM:614197|Ensembl:ENSG00000156026|HPRD:10696|Vega:OTTHUMG00000018443 10 10q22.1 mitochondrial calcium uniporter protein-coding MCU mitochondrial calcium uniporter O calcium uniporter protein, mitochondrial|coiled-coil domain-containing protein 109A 20121230 -9606 90557 CCDC74A - - HGNC:25197|Ensembl:ENSG00000163040|HPRD:14274|Vega:OTTHUMG00000131667 2 2q21.1 coiled-coil domain containing 74A protein-coding CCDC74A coiled-coil domain containing 74A O coiled-coil domain-containing protein 74A 20121230 -9606 90576 ZNF799 - HIT-40|ZNF842 HGNC:28071|Ensembl:ENSG00000196466|Vega:OTTHUMG00000156408 19 19p13.2 zinc finger protein 799 protein-coding ZNF799 zinc finger protein 799 O protein for MGC71805|zinc finger protein 14|zinc finger protein 842|zinc finger protein HIT-40 20121230 -9606 90580 C19orf52 - - HGNC:25152|Ensembl:ENSG00000142444|HPRD:14275|Vega:OTTHUMG00000180700 19 19p13.2 chromosome 19 open reading frame 52 protein-coding C19orf52 chromosome 19 open reading frame 52 O uncharacterized protein C19orf52 20121230 -9606 90586 AOC4 - - - 17 17q21.31 amine oxidase, copper containing 3 (vascular adhesion protein 1) pseudogene pseudo - - - - 20121230 -9606 90589 ZNF625 - - HGNC:30571|Ensembl:ENSG00000257591|HPRD:15880|Vega:OTTHUMG00000156407 19 19p13.2 zinc finger protein 625 protein-coding ZNF625 zinc finger protein 625 O - 20121230 -9606 90592 ZNF700 - - HGNC:25292|Ensembl:ENSG00000196757|HPRD:10903|Vega:OTTHUMG00000156421 19 19p13.2 zinc finger protein 700 protein-coding ZNF700 zinc finger protein 700 O - 20121230 -9606 90594 ZNF439 - - HGNC:20873|Ensembl:ENSG00000171291|HPRD:11717|Vega:OTTHUMG00000156527 19 19p13.2 zinc finger protein 439 protein-coding ZNF439 zinc finger protein 439 O - 20121230 -9606 90624 LYRM7 - C5orf31 HGNC:28072|Ensembl:ENSG00000186687|HPRD:14276|Vega:OTTHUMG00000128994 5 5q23.3 LYR motif containing 7 protein-coding LYRM7 LYR motif containing 7 O LYR motif-containing protein 7|Lyrm7 homolog 20121230 -9606 90625 ERVH48-1 - C21orf105|NDUFV3-AS1 HGNC:17216 21 21q22.3 endogenous retrovirus group 48, member 1 unknown ERVH48-1 endogenous retrovirus group 48, member 1 O - 20121021 -9606 90627 STARD13 RP11-81F11.1 ARHGAP37|DLC2|GT650|LINC00464 HGNC:19164|MIM:609866|Ensembl:ENSG00000133121|HPRD:11607|Vega:OTTHUMG00000016708 13 13q12-q13 StAR-related lipid transfer (START) domain containing 13 protein-coding STARD13 StAR-related lipid transfer (START) domain containing 13 O 46H23.2|DLC-2|Rho GTPase activating protein on chromosome 13q12|deleted in liver cancer 2 protein|long intergenic non-protein coding RNA 464|stAR-related lipid transfer protein 13 20121230 -9606 90632 LINC00473 - C6orf176|bA142J11.1 HGNC:21160 6 6q27 long intergenic non-protein coding RNA 473 miscRNA LINC00473 long intergenic non-protein coding RNA 473 O - 20121230 -9606 90634 N4BP2L1 RP11-298P3.2 CG018 HGNC:25037|Ensembl:ENSG00000139597|HPRD:12384|Vega:OTTHUMG00000016697 13 13q13.1 NEDD4 binding protein 2-like 1 protein-coding N4BP2L1 NEDD4 binding protein 2-like 1 O NEDD4-binding protein 2-like 1|hypothetical gene CG018 20121230 -9606 90637 ZFAND2A - AIRAP HGNC:28073|MIM:610699|Ensembl:ENSG00000178381|HPRD:14277|Vega:OTTHUMG00000119019 7 7p22.3 zinc finger, AN1-type domain 2A protein-coding ZFAND2A zinc finger, AN1-type domain 2A O AN1-type zinc finger protein 2A|arsenite inducible RNA associated protein 20121230 -9606 90639 COX19 - - HGNC:28074|MIM:610429|Ensembl:ENSG00000240230|Vega:OTTHUMG00000151476 7 7p22.3 cytochrome c oxidase assembly homolog 19 (S. cerevisiae) protein-coding COX19 cytochrome c oxidase assembly homolog 19 (S. cerevisiae) O COX19 cytochrome c oxidase assembly homolog|cytochrome c oxidase assembly protein COX19|hCOX19 20121230 -9606 90649 ZNF486 - KRBO2 HGNC:20807|Ensembl:ENSG00000256229|Vega:OTTHUMG00000179731 19 19p12 zinc finger protein 486 protein-coding ZNF486 zinc finger protein 486 O KRAB box only protein 2|KRAB domain only 2|KRAB domain only protein 2 20121230 -9606 90655 TGIF2LY - TGIFLY HGNC:18569|MIM:400025|Ensembl:ENSG00000176679|HPRD:18512|Vega:OTTHUMG00000036153 Y Yp11.2 TGFB-induced factor homeobox 2-like, Y-linked protein-coding TGIF2LY TGFB-induced factor homeobox 2-like, Y-linked O TGF-beta-induced transcription factor 2-like protein|TGFB-induced factor 2-like protein, Y-linked|TGFB-induced factor 2-like, Y-linked|TGIF-like on the Y|homeobox protein TGIF2LY 20121230 -9606 90665 TBL1Y - TBL1 HGNC:18502|MIM:400033|Ensembl:ENSG00000092377|HPRD:15962|Vega:OTTHUMG00000035299 Y Yp11.2 transducin (beta)-like 1, Y-linked protein-coding TBL1Y transducin (beta)-like 1, Y-linked O F-box-like/WD repeat-containing protein TBL1Y|transducin beta-like 1|transducin beta-like protein 1Y|transducin-beta-like protein 1, Y-linked 20121230 -9606 90668 LRRC16B - C14orf121|CARMIL3|crml-1 HGNC:20272|MIM:614716|Ensembl:ENSG00000186648|HPRD:11278|Vega:OTTHUMG00000172023 14 14q11.2 leucine rich repeat containing 16B protein-coding LRRC16B leucine rich repeat containing 16B O leucine-rich repeat-containing protein 16B 20121230 -9606 90673 PPP1R3E - - HGNC:14943 14 14q11.2 protein phosphatase 1, regulatory subunit 3E miscRNA PPP1R3E protein phosphatase 1, regulatory subunit 3E O - 20121230 -9606 90678 LRSAM1 UNQ6496/PRO21356 CMT2P|RIFLE|TAL HGNC:25135|MIM:610933|Ensembl:ENSG00000148356|HPRD:14325|Vega:OTTHUMG00000020701 9 9q33.3 leucine rich repeat and sterile alpha motif containing 1 protein-coding LRSAM1 leucine rich repeat and sterile alpha motif containing 1 O E3 ubiquitin-protein ligase LRSAM1|Tsg101-associated ligase 20121230 -9606 90693 CCDC126 UNQ786/PRO1605 - HGNC:22398|Ensembl:ENSG00000169193|HPRD:14278|Vega:OTTHUMG00000128461 7 7p15.3 coiled-coil domain containing 126 protein-coding CCDC126 coiled-coil domain containing 126 O coiled-coil domain-containing protein 126 20121230 -9606 90701 SEC11C - SEC11L3|SPC21|SPCS4C HGNC:23400|Ensembl:ENSG00000166562|HPRD:15310|Vega:OTTHUMG00000132762 18 18q21.32 SEC11 homolog C (S. cerevisiae) protein-coding SEC11C SEC11 homolog C (S. cerevisiae) O SEC11-like 3|SEC11-like protein 3|SPase 21 kDa subunit|microsomal signal peptidase 21 kDa subunit|signal peptidase complex catalytic subunit SEC11C 20121230 -9606 90736 FAM104B RP11-266I3.4 CXorf44 HGNC:25085|Ensembl:ENSG00000182518|HPRD:06457|Vega:OTTHUMG00000021646 X Xp11.21 family with sequence similarity 104, member B protein-coding FAM104B family with sequence similarity 104, member B O protein FAM104B 20121230 -9606 90737 PAGE5 RP11-382F24.4 CT16|CT16.1|CT16.2|GAGEE1|PAGE-5 HGNC:29992|Ensembl:ENSG00000158639|HPRD:06672|Vega:OTTHUMG00000021650 X Xp11.21 P antigen family, member 5 (prostate associated) protein-coding PAGE5 P antigen family, member 5 (prostate associated) O G antigen family E member 1|G antigen, family E, 1|cancer/testis antigen 16.1|cancer/testis antigen family 16, member 1|cancer/testis antigen family 16, member 2|prostate-associated gene 5 protein 20121230 -9606 90768 MGC45800 - - HPRD:14643 4 4q34.3 uncharacterized LOC90768 miscRNA - - - - 20121230 -9606 90780 PYGO2 PP7910 1190004M21Rik HGNC:30257|MIM:606903|Ensembl:ENSG00000163348|HPRD:06065|Vega:OTTHUMG00000037370 1 1q21.3 pygopus homolog 2 (Drosophila) protein-coding PYGO2 pygopus homolog 2 (Drosophila) O pygopus 2|pygopus homolog 2 20121230 -9606 90784 LOC90784 - - - 2 2p11.2 uncharacterized LOC90784 miscRNA - - - - 20121230 -9606 90799 CEP95 - CCDC45 HGNC:25141|Ensembl:ENSG00000258890|HPRD:11279|Vega:OTTHUMG00000179174 17 17q23.3 centrosomal protein 95kDa protein-coding CEP95 centrosomal protein 95kDa O centrosomal protein of 95 kDa|coiled-coil domain containing 45|coiled-coil domain-containing protein 45 20121230 -9606 90806 ANGEL2 - KIAA0759L HGNC:30534|Ensembl:ENSG00000174606|HPRD:14279|Vega:OTTHUMG00000036927 1 1q32.3 angel homolog 2 (Drosophila) protein-coding ANGEL2 angel homolog 2 (Drosophila) O protein angel homolog 2 20121230 -9606 90809 TMEM55B - C14orf9 HGNC:19299|MIM:609865|Ensembl:ENSG00000165782|HPRD:12660|Vega:OTTHUMG00000029545 14 14q11.2 transmembrane protein 55B protein-coding TMEM55B transmembrane protein 55B O PtdIns-4,5-P(2) 4-phosphatase type I|ptdIns-4,5-P2 4-Ptase I|type I phosphatidylinositol 4,5-bisphosphate 4-phosphatase 20121230 -9606 90826 PRMT10 - - HGNC:25099|Ensembl:ENSG00000164169|HPRD:14280|Vega:OTTHUMG00000161361 4 4q31.23 protein arginine methyltransferase 10 (putative) protein-coding PRMT10 protein arginine methyltransferase 10 (putative) O putative protein arginine N-methyltransferase 10 20121230 -9606 90827 ZNF479 - KR19 HGNC:23258|Ensembl:ENSG00000185177|Vega:OTTHUMG00000156682 7 7p11.2 zinc finger protein 479 protein-coding ZNF479 zinc finger protein 479 O HKr19|KRAB zinc finger protein KR19|zinc finger protein Kr19 20121230 -9606 90834 LOC90834 - - - 22 22q13.33 uncharacterized protein BC001742 miscRNA - - - - 20121230 -9606 90835 C16orf93 - - HGNC:28078|Ensembl:ENSG00000196118|HPRD:18705|Vega:OTTHUMG00000167926 16 16p11.2 chromosome 16 open reading frame 93 protein-coding C16orf93 chromosome 16 open reading frame 93 O coiled-coil domain-containing protein C16orf93 20121230 -9606 90843 TCEAL8 LL0XNC01-177E8.3 - HGNC:28683|Ensembl:ENSG00000180964|HPRD:06656|Vega:OTTHUMG00000022094 X Xq22.1 transcription elongation factor A (SII)-like 8 protein-coding TCEAL8 transcription elongation factor A (SII)-like 8 O TCEA-like protein 8|transcription elongation factor A protein-like 8|transcription elongation factor S-II protein-like 8 20121230 -9606 90850 ZNF598 - - HGNC:28079|Ensembl:ENSG00000167962|HPRD:11732|Vega:OTTHUMG00000176955 16 16p13.3 zinc finger protein 598 protein-coding ZNF598 zinc finger protein 598 O - 20121230 -9606 90853 SPOCD1 RP11-84A19.1 - HGNC:26338|Ensembl:ENSG00000134668|HPRD:08057|Vega:OTTHUMG00000003879 1 1p35.2 SPOC domain containing 1 protein-coding SPOCD1 SPOC domain containing 1 O SPOC domain-containing protein 1 20121230 -9606 90859 NT5C3P1 - UMPH1P HGNC:18530 4 4q26 5'-nucleotidase, cytosolic III pseudogene 1 pseudo NT5C3P1 5'-nucleotidase, cytosolic III pseudogene 1 O - 20121230 -9606 90861 HN1L LA16c-431H6.1 C16orf34|L11 HGNC:14137|Ensembl:ENSG00000206053|HPRD:12674|Vega:OTTHUMG00000047859 16 16p13.3 hematological and neurological expressed 1-like protein-coding HN1L hematological and neurological expressed 1-like O CRAMP_1 like|HN1 like|HN1-like protein|hematological and neurological expressed 1-like protein 20121230 -9606 90864 SPSB3 - C16orf31|SSB3 HGNC:30629|MIM:611659|Ensembl:ENSG00000162032|HPRD:18107|Vega:OTTHUMG00000176746 16 16p13.3 splA/ryanodine receptor domain and SOCS box containing 3 protein-coding SPSB3 splA/ryanodine receptor domain and SOCS box containing 3 O SPRY domain-containing SOCS box protein 3|SPRY domain-containing SOCS box protein SSB-3 20121230 -9606 90865 IL33 - C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV|RP11-575C20.2 HGNC:16028|MIM:608678|Ensembl:ENSG00000137033|HPRD:12275|Vega:OTTHUMG00000019516 9 9p24.1 interleukin 33 protein-coding IL33 interleukin 33 O DVS27-related protein|IL-1F11|IL-33|interleukin-1 family member 11|interleukin-33|nuclear factor for high endothelial venules|nuclear factor from high endothelial venules 20121230 -9606 90871 C9orf123 - - HGNC:30536|Ensembl:ENSG00000137038|HPRD:12939|Vega:OTTHUMG00000019539 9 9p24.1 chromosome 9 open reading frame 123 protein-coding C9orf123 chromosome 9 open reading frame 123 O transmembrane protein C9orf123 20121230 -9606 90874 ZNF697 - - HGNC:32034|Ensembl:ENSG00000143067|Vega:OTTHUMG00000012962 1 1p12 zinc finger protein 697 protein-coding ZNF697 zinc finger protein 697 O - 20121230 -9606 90933 TRIM41 - RINCK HGNC:19013|MIM:610530|Ensembl:ENSG00000146063|HPRD:15558|Vega:OTTHUMG00000130965 5 5q35.3 tripartite motif containing 41 protein-coding TRIM41 tripartite motif containing 41 O E3 ubiquitin-protein ligase TRIM41|RING finger-interacting protein with C kinase|RING-finger protein that interacts with C kinase 20121230 -9606 90952 ESAM UNQ220/PRO246 W117m HGNC:17474|MIM:614281|Ensembl:ENSG00000149564|HPRD:13280|Vega:OTTHUMG00000151986 11 11q24.2 endothelial cell adhesion molecule protein-coding ESAM endothelial cell adhesion molecule O 2310008D05Rik|HUEL (C4orf1)-interacting protein|LP4791 protein|endothelial cell-selective adhesion molecule 20121230 -9606 90956 ADCK2 - AARF HGNC:19039|Ensembl:ENSG00000133597|HPRD:10631|Vega:OTTHUMG00000157409 7 7q34 aarF domain containing kinase 2 protein-coding ADCK2 aarF domain containing kinase 2 O putative ubiquinone biosynthesis protein AarF|uncharacterized aarF domain-containing protein kinase 2 20121230 -9606 90957 DHX57 - DDX57 HGNC:20086|Ensembl:ENSG00000163214|HPRD:09919|Vega:OTTHUMG00000102103 2 2p22.1 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 protein-coding DHX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 O DEAH box protein 57|DEAH-box RNA/DNA helicase AAM73547|putative ATP-dependent RNA helicase DHX57 20121230 -9606 90987 ZNF251 - - HGNC:13045|Ensembl:ENSG00000198169|Vega:OTTHUMG00000165189 8 8q24.3 zinc finger protein 251 protein-coding ZNF251 zinc finger protein 251 O - 20121230 -9606 90990 KIFC2 - - HGNC:29530|Ensembl:ENSG00000167702|HPRD:13916|Vega:OTTHUMG00000165133 8 8q24.3 kinesin family member C2 protein-coding KIFC2 kinesin family member C2 O kinesin-like protein KIFC2 20121230 -9606 90993 CREB3L1 PSEC0238 OASIS HGNC:18856|Ensembl:ENSG00000157613|HPRD:16751|Vega:OTTHUMG00000166423 11 11p11.2 cAMP responsive element binding protein 3-like 1 protein-coding CREB3L1 cAMP responsive element binding protein 3-like 1 O BBF-2 homolog|cAMP-responsive element-binding protein 3-like protein 1|cyclic AMP-responsive element-binding protein 3-like protein 1|old astrocyte specifically induced substance|old astrocyte specifically-induced substance 20121230 -9606 91010 FMNL3 - FHOD3|WBP-3|WBP3 HGNC:23698|Ensembl:ENSG00000161791|HPRD:17007|Vega:OTTHUMG00000169651 12 12q13.12 formin-like 3 protein-coding FMNL3 formin-like 3 O WW domain binding protein 3|WW domain-binding protein 3|formin homology 2 domain-containing protein 3|formin-like protein 3 20121230 -9606 91012 CERS5 - LASS5|Trh4 HGNC:23749|Ensembl:ENSG00000139624|HPRD:13963|Vega:OTTHUMG00000169819 12 12q13.12 ceramide synthase 5 protein-coding CERS5 ceramide synthase 5 O LAG1 homolog, ceramide synthase 5|LAG1 longevity assurance homolog 5 20121230 -9606 91039 DPP9 - DP9|DPLP9|DPRP-2|DPRP2 HGNC:18648|MIM:608258|Ensembl:ENSG00000142002|HPRD:07001 19 19p13.3 dipeptidyl-peptidase 9 protein-coding DPP9 dipeptidyl-peptidase 9 O DPP IX|dipeptidyl peptidase 9|dipeptidyl peptidase IV-related protein 2|dipeptidyl peptidase IV-related protein-2|dipeptidyl peptidase IX|dipeptidyl peptidase-like protein 9|dipeptidylpeptidase 9 20121230 -9606 91050 CCDC149 - - HGNC:25405|Ensembl:ENSG00000181982|HPRD:10908|Vega:OTTHUMG00000160308 4 4p15.2 coiled-coil domain containing 149 protein-coding CCDC149 coiled-coil domain containing 149 O coiled-coil domain-containing protein 149 20121230 -9606 91056 AP5B1 - AP-5|PP1030 HGNC:25104|MIM:614367|Ensembl:ENSG00000254470|HPRD:13223|Vega:OTTHUMG00000166593 11 11q13.1 adaptor-related protein complex 5, beta 1 subunit protein-coding AP5B1 adaptor-related protein complex 5, beta 1 subunit O AP-5 complex subunit beta|AP-5 complex subunit beta-1|beta5 20121230 -9606 91057 CCDC34 L15 NY-REN-41|RAMA3 HGNC:25079|MIM:612324|Ensembl:ENSG00000109881|HPRD:14868|Vega:OTTHUMG00000166211 11 11p14.1 coiled-coil domain containing 34 protein-coding CCDC34 coiled-coil domain containing 34 O NY-REN-41 antigen|coiled-coil domain-containing protein 34|renal carcinoma antigen NY-REN-41 20121230 -9606 91074 ANKRD30A RP11-20F24.1 NY-BR-1 HGNC:17234|MIM:610856|Ensembl:ENSG00000148513|HPRD:10125|Vega:OTTHUMG00000017968 10 10p11.21 ankyrin repeat domain 30A protein-coding ANKRD30A ankyrin repeat domain 30A O ankyrin repeat domain-containing protein 30A|breast cancer antigen NY-BR-1|serologically defined breast cancer antigen NY-BR-1 20121230 -9606 91107 TRIM47 - GOA|RNF100 HGNC:19020|MIM:611041|Ensembl:ENSG00000132481|HPRD:15564|Vega:OTTHUMG00000179916 17 17q25 tripartite motif containing 47 protein-coding TRIM47 tripartite motif containing 47 O RING finger protein 100|gene overexpressed in astrocytoma protein|tripartite motif-containing 47|tripartite motif-containing protein 47 20121230 -9606 91120 ZNF682 - BC39498_3 HGNC:28857|Ensembl:ENSG00000197124|HPRD:14282 19 19p12 zinc finger protein 682 protein-coding ZNF682 zinc finger protein 682 O - 20121230 -9606 91133 L3MBTL4 - HsT1031 HGNC:26677|Ensembl:ENSG00000154655|HPRD:08198|Vega:OTTHUMG00000178980 18 18p11.31 l(3)mbt-like 4 (Drosophila) protein-coding L3MBTL4 l(3)mbt-like 4 (Drosophila) O H-l(3)mbt-like protein 4|l(3)mbt-like protein 4|lethal(3)malignant brain tumor-like protein 4 20121230 -9606 91137 SLC25A46 - - HGNC:25198|MIM:610826|Ensembl:ENSG00000164209|HPRD:14283|Vega:OTTHUMG00000128794 5 5q22.1 solute carrier family 25, member 46 protein-coding SLC25A46 solute carrier family 25, member 46 O solute carrier family 25 member 46 20121230 -9606 91147 TMEM67 - JBTS6|MECKELIN|MKS3|NPHP11|TNEM67 HGNC:28396|MIM:609884|Ensembl:ENSG00000164953|HPRD:11324|Vega:OTTHUMG00000153119 8 8q22.1 transmembrane protein 67 protein-coding TMEM67 transmembrane protein 67 O Meckelin|meckel syndrome type 3 protein 20121230 -9606 91149 RAPGEF4-AS1 - - HGNC:28081 2 2q31.1 RAPGEF4 antisense RNA 1 miscRNA RAPGEF4-AS1 RAPGEF4 antisense RNA 1 O - 20121230 -9606 91151 TIGD7 - Sancho HGNC:18331|MIM:612969|Ensembl:ENSG00000140993|HPRD:11632|Vega:OTTHUMG00000129325 16 16p13.3 tigger transposable element derived 7 protein-coding TIGD7 tigger transposable element derived 7 O tigger transposable element-derived protein 7 20121230 -9606 91156 IGFN1 - EEF1A2BP1 HGNC:24607|Ensembl:ENSG00000163395|HPRD:16812 1 1q32.1 immunoglobulin-like and fibronectin type III domain containing 1 protein-coding IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 O EEF1A2-binding protein 1|KY-interacting protein 1|eEF1A2 binding protein|immunoglobulin-like and fibronectin type III domain-containing protein 1 20121230 -9606 91179 SCARF2 - NSR1|SREC-II|SREC2|SRECRP-1|VDEGS HGNC:19869|MIM:613619|Ensembl:ENSG00000244486|HPRD:15299|Vega:OTTHUMG00000150779 22 22q11.21 scavenger receptor class F, member 2 protein-coding SCARF2 scavenger receptor class F, member 2 O scavenger receptor class F member 2|scavenger receptor expressed by endothelial cells 2 protein 20121230 -9606 91181 NUP210L - RP11-144B19.1 HGNC:29915|Ensembl:ENSG00000143552|HPRD:14852|Vega:OTTHUMG00000035852 1 1q21.3 nucleoporin 210kDa-like protein-coding NUP210L nucleoporin 210kDa-like O nuclear pore membrane glycoprotein 210-like|nuclear pore membrane glycoprotein 210-like (LOC91181)|nucleoporin Nup210-like 20121230 -9606 91219 FAM108A6P - FAM108A6 HGNC:34043 22 22q11.22 family with sequence similarity 108, member A1 pseudogene pseudo FAM108A6P family with sequence similarity 108, member A6, pseudogene O - 20121230 -9606 91227 GGTLC2 - GGTL4 HGNC:18596|MIM:612339|Ensembl:ENSG00000100121|HPRD:09971|Vega:OTTHUMG00000151177 22 22q11.22 gamma-glutamyltransferase light chain 2 protein-coding GGTLC2 gamma-glutamyltransferase light chain 2 O gamma-glutamyltransferase-like 4|gamma-glutamyltransferase-like protein 4 20121230 -9606 91252 SLC39A13 - - HGNC:20859|MIM:608735|Ensembl:ENSG00000165915|Vega:OTTHUMG00000166890 11 11p11.2 solute carrier family 39 (zinc transporter), member 13 protein-coding SLC39A13 solute carrier family 39 (zinc transporter), member 13 O LIV-1 subfamily of ZIP zinc transporter 9|LZT-Hs9|solute carrier family 39 (metal ion transporter), member 13|zinc transporter ZIP13|zrt- and Irt-like protein 13 20121230 -9606 91272 BOD1 - FAM44B HGNC:25114|Ensembl:ENSG00000145919|HPRD:13309|Vega:OTTHUMG00000130540 5 5q35.2 biorientation of chromosomes in cell division 1 protein-coding BOD1 biorientation of chromosomes in cell division 1 O biorientation defective 1|biorientation of chromosomes in cell division protein 1|family with sequence similarity 44, member B 20121230 -9606 91283 MSANTD3 L8 C9orf30 HGNC:23370|Ensembl:ENSG00000066697|HPRD:14459|Vega:OTTHUMG00000020365 9 9q31.1 Myb/SANT-like DNA-binding domain containing 3 protein-coding MSANTD3 Myb/SANT-like DNA-binding domain containing 3 O UPF0439 protein C9orf30|myb/SANT-like DNA-binding domain-containing protein 3 20121230 -9606 91289 LMF2 - TMEM112B|TMEM153 HGNC:25096|Ensembl:ENSG00000100258|HPRD:12519|Vega:OTTHUMG00000150206 22 22q13.33 lipase maturation factor 2 protein-coding LMF2 lipase maturation factor 2 O transmembrane protein 112B|transmembrane protein 153 20121230 -9606 91298 C12orf29 - - HGNC:25322|Ensembl:ENSG00000133641|HPRD:13199|Vega:OTTHUMG00000169870 12 12q21.32 chromosome 12 open reading frame 29 protein-coding C12orf29 chromosome 12 open reading frame 29 O uncharacterized protein C12orf29 20121230 -9606 91300 R3HDM4 - C19orf22 HGNC:28270|Ensembl:ENSG00000198858|HPRD:16625|Vega:OTTHUMG00000181899 19 19p13.3 R3H domain containing 4 protein-coding R3HDM4 R3H domain containing 4 O R3H domain-containing protein 4|R3H domain-containing protein C19orf22 20121230 -9606 91304 C19orf6 - ASBABP1|MBRL|MEMBRALIN|R32184_3 HGNC:17039|MIM:611011|Ensembl:ENSG00000182087|HPRD:12710|Vega:OTTHUMG00000181905 19 19p13.3 chromosome 19 open reading frame 6 protein-coding C19orf6 chromosome 19 open reading frame 6 O aspecific BCL2 ARE-binding protein 1|membralin 20121230 -9606 91316 GUSBP11 - - HGNC:42325 22 22q11.23 glucuronidase, beta pseudogene 11 pseudo GUSBP11 glucuronidase, beta pseudogene 11 O - 20121230 -9606 91319 DERL3 - C22orf14|IZP6|LLN2|derlin-3 HGNC:14236|MIM:610305|Ensembl:ENSG00000099958|HPRD:13139|Vega:OTTHUMG00000150743 22 22q11.23 derlin 3 protein-coding DERL3 derlin 3 O DERtrin 3|DERtrin-3|Der1-like domain family, member 3|degradation in endoplasmic reticulum protein 3|der1-like protein 3|derlin-3 20121230 -9606 91351 DDX60L - - HGNC:26429|Ensembl:ENSG00000181381|Vega:OTTHUMG00000161412 4 4q32.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like protein-coding DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like O DEAD box protein 60-like|probable ATP-dependent RNA helicase DDX60-like 20121230 -9606 91353 IGLL3P CTA-246H3.1 16.1|IGLL3 HGNC:5872|HPRD:18481 22 22q11.23 immunoglobulin lambda-like polypeptide 3, pseudogene pseudo IGLL3P immunoglobulin lambda-like polypeptide 3, pseudogene O - 20121230 -9606 91355 LRP5L CTA-246H3.10-004 - HGNC:25323|Ensembl:ENSG00000100068|HPRD:13200|Vega:OTTHUMG00000150900 22 22q11.23 low density lipoprotein receptor-related protein 5-like protein-coding LRP5L low density lipoprotein receptor-related protein 5-like O LRP-5-like|low-density lipoprotein receptor-related protein 5-like protein 20121230 -9606 91368 CDKN2AIPNL - - HGNC:30545|Ensembl:ENSG00000237190|HPRD:14430|Vega:OTTHUMG00000129123 5 5q31.1 CDKN2A interacting protein N-terminal like protein-coding CDKN2AIPNL CDKN2A interacting protein N-terminal like O CDKN2A-interacting protein N-terminal-like protein|CDKN2AIP N-terminal-like protein 20121230 -9606 91369 ANKRD40 - - HGNC:28233|Ensembl:ENSG00000154945|HPRD:17502|Vega:OTTHUMG00000162255 17 17q21.33 ankyrin repeat domain 40 protein-coding ANKRD40 ankyrin repeat domain 40 O ankyrin repeat domain-containing protein 40 20121230 -9606 91370 MGC20647 - - - 22 22q12.1 uncharacterized protein MGC20647 unknown - - - - 20120710 -9606 91373 UAP1L1 RP11-229P13.18-004 RP11-229P13.18 HGNC:28082|Ensembl:ENSG00000197355|HPRD:15596|Vega:OTTHUMG00000020962 9 9q34.3 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 protein-coding UAP1L1 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 O UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 20121230 -9606 91380 SNORD107 - HBII-436 HGNC:32771 15 15q11.2 small nucleolar RNA, C/D box 107 snoRNA SNORD107 small nucleolar RNA, C/D box 107 O - 20121230 -9606 91392 ZNF502 - - HGNC:23718|Ensembl:ENSG00000196653|HPRD:15810|Vega:OTTHUMG00000133086 3 3p21.31 zinc finger protein 502 protein-coding ZNF502 zinc finger protein 502 O - 20121230 -9606 91404 SESTD1 - SOLO HGNC:18379|Ensembl:ENSG00000187231|HPRD:11549|Vega:OTTHUMG00000154554 2 2q31.2 SEC14 and spectrin domains 1 protein-coding SESTD1 SEC14 and spectrin domains 1 O SEC14 domain and spectrin repeat-containing protein 1|huntingtin-interacting protein-like protein|protein Solo 20121230 -9606 91405 PLEKHA3P1 - PLEKHA3P HGNC:19648 19 19q13.2 pleckstrin homology domain containing, family A member 3 pseudogene 1 pseudo PLEKHA3P1 pleckstrin homology domain containing, family A member 3 pseudogene 1 O - 20121230 -9606 91408 BTF3L4 RP4-800M22.5 - HGNC:30547|Ensembl:ENSG00000134717|HPRD:17521|Vega:OTTHUMG00000008960 1 1p32.3 basic transcription factor 3-like 4 protein-coding BTF3L4 basic transcription factor 3-like 4 O transcription factor BTF3 homolog 4 20121230 -9606 91409 CCDC74B - - HGNC:25267|Ensembl:ENSG00000152076|HPRD:08534|Vega:OTTHUMG00000131629 2 2q21.1 coiled-coil domain containing 74B protein-coding CCDC74B coiled-coil domain containing 74B O coiled-coil domain-containing protein 74B 20121230 -9606 91419 XRCC6BP1 - KUB3 HGNC:29452|Ensembl:ENSG00000166896|HPRD:17256|Vega:OTTHUMG00000170493 12 12q14.1 XRCC6 binding protein 1 protein-coding XRCC6BP1 XRCC6 binding protein 1 O Ku70 binding protein 3|Ku70-binding protein 3|XRCC6-binding protein 1|mitochondrial inner membrane protease ATP23 homolog 20121230 -9606 91433 RCCD1 - - HGNC:30457|Ensembl:ENSG00000166965|HPRD:18706|Vega:OTTHUMG00000171684 15 15q26.1 RCC1 domain containing 1 protein-coding RCCD1 RCC1 domain containing 1 O RCC1 domain-containing protein 1 20121230 -9606 91442 C19orf40 - FAAP24 HGNC:28467|MIM:610884|Ensembl:ENSG00000131944|HPRD:14547|Vega:OTTHUMG00000180339 19 19q13.11 chromosome 19 open reading frame 40 protein-coding C19orf40 chromosome 19 open reading frame 40 O Fanconi anemia-associated protein of 24 kDa|Fanconi anemia-associated protein, 24 kDa 20121230 -9606 91445 RNF185 - - HGNC:26783|Ensembl:ENSG00000138942|HPRD:08790|Vega:OTTHUMG00000151253 22 22q12.2 ring finger protein 185 protein-coding RNF185 ring finger protein 185 O BSK65-MONO1|BSK65-MONO2|BSK65-PANC1|BSK65-PANC2|BSK65-TEST1|BSK65-TEST2|BSK65-TEST3|E3 ubiquitin-protein ligase RNF185 20121230 -9606 91450 LOC91450 - - - 15 15q24.3 uncharacterized LOC91450 miscRNA - - - - 20121230 -9606 91452 ACBD5 RP11-85G18.5 - HGNC:23338|Ensembl:ENSG00000107897|HPRD:12415|Vega:OTTHUMG00000017854 10 10p12.1 acyl-CoA binding domain containing 5 protein-coding ACBD5 acyl-CoA binding domain containing 5 O acyl-CoA-binding domain-containing protein 5|acyl-Coenzyme A binding domain containing 5|endozepine-related protein|membrane-associated diazepam binding inhibitor 20121230 -9606 91461 PKDCC - SGK493|Vlk HGNC:25123|MIM:614150|Ensembl:ENSG00000162878|HPRD:18707|Vega:OTTHUMG00000152303 2 2p21 protein kinase domain containing, cytoplasmic protein-coding PKDCC protein kinase domain containing, cytoplasmic O protein kinase domain containing, cytoplasmic homolog|protein kinase domain-containing protein, cytoplasmic|protein kinase-like protein SgK493|sugen kinase 493|vertebrate lonesome kinase 20121230 -9606 91464 ISX - Pix-1|RAXLX HGNC:28084|MIM:612019|Ensembl:ENSG00000175329|HPRD:17957|Vega:OTTHUMG00000150962 22 22q12.3 intestine-specific homeobox protein-coding ISX intestine-specific homeobox O RAX-like homeobox|pancreas-intestine homeodomain transcription factor 20121230 -9606 91522 COL23A1 - - HGNC:22990|MIM:610043|Ensembl:ENSG00000050767|HPRD:16733|Vega:OTTHUMG00000130890 5 5q35.3 collagen, type XXIII, alpha 1 protein-coding COL23A1 collagen, type XXIII, alpha 1 O collagen alpha-1(XXIII) chain|procollagen, type XXIII, alpha 1 20121230 -9606 91523 PCED1B - FAM113B HGNC:28255|Ensembl:ENSG00000179715|HPRD:17513|Vega:OTTHUMG00000169617 12 12q13.11 PC-esterase domain containing 1B protein-coding PCED1B PC-esterase domain containing 1B O PC-esterase domain-containing protein 1B|family with sequence similarity 113, member B|protein FAM113B 20121230 -9606 91526 ANKRD44 - PP6-ARS-B HGNC:25259|Ensembl:ENSG00000065413|HPRD:14284|Vega:OTTHUMG00000154411 2 2q33.1 ankyrin repeat domain 44 protein-coding ANKRD44 ankyrin repeat domain 44 O ankyrin repeat domain-containing protein 44|protein phosphatase 6 ankyrin repeat subunit B|serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B|serine/threonine-protein phosphatase 6 regulatory subunit ARS-B 20121230 -9606 91543 RSAD2 - 2510004L01Rik|cig33|cig5|vig1 HGNC:30908|MIM:607810|Ensembl:ENSG00000134321|HPRD:07423|Vega:OTTHUMG00000090352 2 2p25.2 radical S-adenosyl methionine domain containing 2 protein-coding RSAD2 radical S-adenosyl methionine domain containing 2 O cytomegalovirus-induced gene 5 protein|radical S-adenosyl methionine domain-containing protein 2|viperin|virus inhibitory protein, endoplasmic reticulum-associated, interferon-inducible 20121230 -9606 91544 UBXN11 PP2243 COA-1|SOC|SOCI|UBXD5 HGNC:30600|MIM:609151|Ensembl:ENSG00000158062|HPRD:10245|Vega:OTTHUMG00000003382 1 1p36.11 UBX domain protein 11 protein-coding UBXN11 UBX domain protein 11 O UBX domain-containing protein 11|UBX domain-containing protein 5|colorectal tumor-associated antigen COA-1|colorectal tumor-associated antigen-1|socius 20121230 -9606 91548 LOC91548 - - - 1 1q32.3 uncharacterized LOC91548 unknown - - - - 20120508 -9606 91561 RPS2P40 hCG_1992539 RPS2_17_1125 HGNC:35541 11 11p15.1 ribosomal protein S2 pseudogene 40 pseudo RPS2P40 ribosomal protein S2 pseudogene 40 O - 20121230 -9606 91574 C12orf65 My030 COXPD7 HGNC:26784|MIM:613541|Ensembl:ENSG00000130921|HPRD:08791|Vega:OTTHUMG00000168852 12 12q24.31 chromosome 12 open reading frame 65 protein-coding C12orf65 chromosome 12 open reading frame 65 O probable peptide chain release factor C12orf65, mitochondrial 20121230 -9606 91582 RPS19BP1 RP5-1104E15.4 AROS|S19BP|dJ1104E15.4 HGNC:28749|MIM:610225|Ensembl:ENSG00000187051|HPRD:14674|Vega:OTTHUMG00000151101 22 22q13.1 ribosomal protein S19 binding protein 1 protein-coding RPS19BP1 ribosomal protein S19 binding protein 1 O 40S ribosomal protein S19-binding protein 1|RPS19-binding protein 1|active regulator of SIRT1|homolog of mouse S19 binding protein 20121230 -9606 91584 PLXNA4 tcag7.1291 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 HGNC:9102|MIM:604280|Ensembl:ENSG00000221866|HPRD:10901|Vega:OTTHUMG00000155108 7 7q32.3 plexin A4 protein-coding PLXNA4 plexin A4 O plexin-A4 20121230 -9606 91603 ZNF830 - CCDC16|OMCG1|SEL13 HGNC:28291|Ensembl:ENSG00000198783|HPRD:14469|Vega:OTTHUMG00000179771 17 17q12 zinc finger protein 830 protein-coding ZNF830 zinc finger protein 830 O coiled-coil domain containing 16|coiled-coil domain-containing protein 16|hypothetical protein MGC20398|sel-13 suppressor of lin-12 homolog 20121230 -9606 91607 SLFN11 - SLFN8/9 HGNC:26633|MIM:614953|Ensembl:ENSG00000172716|HPRD:08178|Vega:OTTHUMG00000132948 17 17q12 schlafen family member 11 protein-coding SLFN11 schlafen family member 11 O - 20121230 -9606 91608 RASL10B - RRP17|VTS58635 HGNC:30295|MIM:612128|Ensembl:ENSG00000141150|HPRD:15215|Vega:OTTHUMG00000132954 17 17q12 RAS-like, family 10, member B protein-coding RASL10B RAS-like, family 10, member B O Ras-related protein 17|ras-like protein VTS58635|ras-like protein family member 10B 20121230 -9606 91612 CHURC1 My015 C14orf52|chch HGNC:20099|MIM:608577|Ensembl:ENSG00000258289|HPRD:12262|Vega:OTTHUMG00000170218 14 14q23.3 churchill domain containing 1 protein-coding CHURC1 churchill domain containing 1 O protein Churchill 20121230 -9606 91614 DEPDC7 - TR2|dJ85M6.4 HGNC:29899|MIM:612294|Ensembl:ENSG00000121690|HPRD:11280|Vega:OTTHUMG00000166242 11 11p13 DEP domain containing 7 protein-coding DEPDC7 DEP domain containing 7 O DEP domain-containing protein 7|dJ85M6.4 (novel 58.3 KDA protein)|novel 58.3 KDA protein 20121230 -9606 91624 NEXN - CMH20|NELIN HGNC:29557|MIM:613121|Ensembl:ENSG00000162614|HPRD:11388|Vega:OTTHUMG00000040533 1 1p31.1 nexilin (F actin binding protein) protein-coding NEXN nexilin (F actin binding protein) O nexilin 20121230 -9606 91646 TDRD12 - ECAT8 HGNC:25044|Ensembl:ENSG00000173809|Vega:OTTHUMG00000177230 19 19q13.11 tudor domain containing 12 protein-coding TDRD12 tudor domain containing 12 O ES cell associated transcript 8|ES cell-associated transcript 8 protein|tudor domain-containing protein 12 20121230 -9606 91647 ATPAF2 LP3663 ATP12|ATP12p|MC5DN1 HGNC:18802|MIM:608918|Ensembl:ENSG00000171953|HPRD:10599|Vega:OTTHUMG00000059354 17 17p11.2 ATP synthase mitochondrial F1 complex assembly factor 2 protein-coding ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 O ATP12 homolog 20121230 -9606 91653 BOC UNQ604/PRO1190 CDON2 HGNC:17173|MIM:608708|Ensembl:ENSG00000144857|Vega:OTTHUMG00000159305 3 3q13.2 BOC cell adhesion associated, oncogene regulated protein-coding BOC BOC cell adhesion associated, oncogene regulated O Boc homolog|brother of CDO|brother of CDON|cell adhesion associated, oncogene regulated 2 20121230 -9606 91661 ZNF765 - - HGNC:25092|Ensembl:ENSG00000196417|HPRD:14285|Vega:OTTHUMG00000163079 19 19q13.42 zinc finger protein 765 protein-coding ZNF765 zinc finger protein 765 O - 20121230 -9606 91662 NLRP12 - CLR19.3|FCAS2|NALP12|PAN6|PYPAF7|RNO|RNO2 HGNC:22938|MIM:609648|Ensembl:ENSG00000142405|HPRD:14803|Vega:OTTHUMG00000060776 19 19q13.42 NLR family, pyrin domain containing 12 protein-coding NLRP12 NLR family, pyrin domain containing 12 O NACHT, LRR and PYD containing protein 12|NACHT, LRR and PYD domains-containing protein 12|NACHT, leucine rich repeat and PYD containing 12|PYRIN-containing APAF1-like protein 7|monarch 1|monarch-1|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 12|regulated by nitric oxide 20121230 -9606 91663 MYADM UNQ553/PRO1110 SB135 HGNC:7544|MIM:609959|Ensembl:ENSG00000179820|HPRD:14792|Vega:OTTHUMG00000060775 19 19q13.42 myeloid-associated differentiation marker protein-coding MYADM myeloid-associated differentiation marker O myeloid upregulated protein 20121230 -9606 91664 ZNF845 - - HGNC:25112|Ensembl:ENSG00000213799 19 19q13.42 zinc finger protein 845 protein-coding ZNF845 zinc finger protein 845 O - 20121230 -9606 91683 SYT12 - SYT11|sytXII HGNC:18381|MIM:606436|Ensembl:ENSG00000173227|HPRD:07337|Vega:OTTHUMG00000167101 11 11q13.2 synaptotagmin XII protein-coding SYT12 synaptotagmin XII O synaptotagmin-12|synaptotagmin-XII 20121230 -9606 91687 CENPL - C1orf155|CENP-L|RP3-383J4.1|dJ383J4.3 HGNC:17879|MIM:611503|Ensembl:ENSG00000120334|HPRD:15909|Vega:OTTHUMG00000034802 1 1q25.1 centromere protein L protein-coding CENPL centromere protein L O interphase centromere complex protein 33 20121230 -9606 91689 C22orf32 - DDDD|dJ186O1.1 HGNC:25055|Ensembl:ENSG00000183172|HPRD:12385|Vega:OTTHUMG00000151286 22 22q13.2 chromosome 22 open reading frame 32 protein-coding C22orf32 chromosome 22 open reading frame 32 O UPF0466 protein C22orf32, mitochondrial 20121230 -9606 91694 LONRF1 - RNF191 HGNC:26302|Ensembl:ENSG00000154359|HPRD:08674|Vega:OTTHUMG00000165475 8 8p23.1 LON peptidase N-terminal domain and ring finger 1 protein-coding LONRF1 LON peptidase N-terminal domain and ring finger 1 O LON peptidase N-terminal domain and RING finger protein 1|RING finger protein 191 20121230 -9606 91695 RRP7B - dJ222E13.2 HGNC:30454 22 22q13.2 ribosomal RNA processing 7 homolog B (S. cerevisiae) pseudo RRP7B ribosomal RNA processing 7 homolog B (S. cerevisiae) O - 20121230 -9606 91703 ACY3 - ACY-3|HCBP1 HGNC:24104|MIM:614413|Ensembl:ENSG00000132744|HPRD:12422|Vega:OTTHUMG00000167283 11 11q13.2 aspartoacylase (aminocyclase) 3 protein-coding ACY3 aspartoacylase (aminocyclase) 3 O HCV core-binding protein 1|acylase III|aminoacylase-3|aspartoacylase-2|hepatitis C virus core-binding protein 1 20121230 -9606 91734 IDI2 - IPPI2 HGNC:23487|Ensembl:ENSG00000148377|HPRD:17127|Vega:OTTHUMG00000017537 10 10p15.3 isopentenyl-diphosphate delta isomerase 2 protein-coding IDI2 isopentenyl-diphosphate delta isomerase 2 O IPP isomerase 2|diphosphate dimethylallyl diphosphate isomerase 2|isopentenyl pyrophosphate isomerase 2|isopentenyl-diphosphate Delta-isomerase 2 20121230 -9606 91746 YTHDC1 - YT521|YT521-B HGNC:30626|Ensembl:ENSG00000083896|HPRD:11689|Vega:OTTHUMG00000129306 4 4q13.2 YTH domain containing 1 protein-coding YTHDC1 YTH domain containing 1 O YTH domain-containing protein 1|putative splicing factor YT521|splicing factor YT521-B 20121230 -9606 91748 ELMSAN1 - C14orf117|C14orf43|LSR68|c14_5541 HGNC:19853|Ensembl:ENSG00000156030|HPRD:12648|Vega:OTTHUMG00000150359 14 14q24.3 ELM2 and Myb/SANT-like domain containing 1 protein-coding ELMSAN1 ELM2 and Myb/SANT-like domain containing 1 O uncharacterized protein C14orf43 20121230 -9606 91749 KIAA1919 RP5-1112D6.6 MFSD4B|NaGLT1 HGNC:21053|Ensembl:ENSG00000173214|HPRD:13904|Vega:OTTHUMG00000015372 6 6q22 KIAA1919 protein-coding KIAA1919 KIAA1919 O sodium-dependent glucose transporter 1 20121230 -9606 91750 LIN52 - C14orf46|c14_5549 HGNC:19856|Ensembl:ENSG00000205659|HPRD:18708|Vega:OTTHUMG00000171204 14 14q24.3 lin-52 homolog (C. elegans) protein-coding LIN52 lin-52 homolog (C. elegans) O protein lin-52 homolog 20121230 -9606 91752 ZNF804A - C2orf10 HGNC:21711|MIM:612282|Ensembl:ENSG00000170396|HPRD:12804|Vega:OTTHUMG00000132625 2 2q32.1 zinc finger protein 804A protein-coding ZNF804A zinc finger protein 804A O - 20121230 -9606 91754 NEK9 - NERCC|NERCC1|Nek8 HGNC:18591|MIM:609798|Ensembl:ENSG00000119638|HPRD:11386|Vega:OTTHUMG00000171768 14 14q24.3 NIMA-related kinase 9 protein-coding NEK9 NIMA-related kinase 9 O NIMA (never in mitosis gene a)- related kinase 9|NIMA-related kinase Nek8|nercc1 kinase|never in mitosis A-related kinase 9|nimA-related kinase 8|nimA-related protein kinase 9|serine/threonine-protein kinase Nek9 20121230 -9606 91768 CABLES1 - CABL1|CABLES|HsT2563|IK3-1 HGNC:25097|MIM:609194|Ensembl:ENSG00000134508|HPRD:16461|Vega:OTTHUMG00000179186 18 18q11.2 Cdk5 and Abl enzyme substrate 1 protein-coding CABLES1 Cdk5 and Abl enzyme substrate 1 O CDK5 and ABL1 enzyme substrate 1|interactor with CDK3 1 20121230 -9606 91775 NXPE3 MSTP115 FAM55C|MST115 HGNC:28238|Ensembl:ENSG00000144815|HPRD:10073|Vega:OTTHUMG00000159179 3 3q12.3 neurexophilin and PC-esterase domain family, member 3 protein-coding NXPE3 neurexophilin and PC-esterase domain family, member 3 O NXPE family member 3|family with sequence similarity 55, member C|protein FAM55C 20121230 -9606 91782 CHMP7 - - HGNC:28439|MIM:611130|Ensembl:ENSG00000147457|HPRD:14534|Vega:OTTHUMG00000131785 8 8p21.3 charged multivesicular body protein 7 protein-coding CHMP7 charged multivesicular body protein 7 O CHMP family, member 7|chromatin-modifying protein 7 20121230 -9606 91801 ALKBH8 - ABH8 HGNC:25189|MIM:613306|Ensembl:ENSG00000137760|HPRD:14287|Vega:OTTHUMG00000157008 11 11q22.3 alkB, alkylation repair homolog 8 (E. coli) protein-coding ALKBH8 alkB, alkylation repair homolog 8 (E. coli) O AlkB homologue 8|S-adenosyl-L-methionine-dependent tRNA methyltransferase ABH8|alkylated DNA repair protein alkB homolog 8|probable alpha-ketoglutarate-dependent dioxygenase ABH8|tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ABH8 20121230 -9606 91807 MYLK3 - MLCK|MLCK2|caMLCK HGNC:29826|MIM:612147|Ensembl:ENSG00000140795|HPRD:11281|Vega:OTTHUMG00000132543 16 16q11.2 myosin light chain kinase 3 protein-coding MYLK3 myosin light chain kinase 3 O MLC kinase|cardiac-MLCK|cardiac-MyBP-C associated Ca/CaM kinase|cardiac-MyBP-C-associated Ca/CaM kinase|putative myosin light chain kinase 3 20121230 -9606 91828 EXOC3L4 - C14orf73 HGNC:20120|Ensembl:ENSG00000205436|Vega:OTTHUMG00000171888 14 14q32.32 exocyst complex component 3-like 4 protein-coding EXOC3L4 exocyst complex component 3-like 4 O SEC6-like protein C14orf73|exocyst complex component 3-like protein 4 20121230 -9606 91833 WDR20 - DMR HGNC:19667|Ensembl:ENSG00000140153|HPRD:11679|Vega:OTTHUMG00000171753 14 14q32.31 WD repeat domain 20 protein-coding WDR20 WD repeat domain 20 O WD repeat-containing protein 20 20121230 -9606 91851 CHRDL1 RP6-141H5.1 CHL|NRLN1|VOPT|dA141H5.1 HGNC:29861|MIM:300350|Ensembl:ENSG00000101938|HPRD:02285|Vega:OTTHUMG00000022199 X Xq23 chordin-like 1 protein-coding CHRDL1 chordin-like 1 O chordin-like protein 1|neuralin 1|neuralin-1|neurogenesin-1|ventroptin 20121230 -9606 91860 CALML4 - NY-BR-20 HGNC:18445|Ensembl:ENSG00000129007|HPRD:12998|Vega:OTTHUMG00000133287 15 15q23 calmodulin-like 4 protein-coding CALML4 calmodulin-like 4 O calmodulin-like protein 4|serologically defined breast cancer antigen NY-BR-20 20121230 -9606 91862 MARVELD3 - MARVD3|MRVLDC3 HGNC:30525|MIM:614094|Ensembl:ENSG00000140832|HPRD:14365|Vega:OTTHUMG00000137591 16 16q22.2 MARVEL domain containing 3 protein-coding MARVELD3 MARVEL domain containing 3 O MARVEL (membrane-associating) domain containing 3|MARVEL domain-containing protein 3 20121230 -9606 91869 RFT1 - CDG1N HGNC:30220|MIM:611908|Ensembl:ENSG00000163933|HPRD:15239|Vega:OTTHUMG00000074035 3 3p21.1 RFT1 homolog (S. cerevisiae) protein-coding RFT1 RFT1 homolog (S. cerevisiae) O RFT1, requiring fifty three 1 homolog|protein RFT1 homolog|putative endoplasmic reticulum multispan transmembrane protein 20121230 -9606 91875 TTC5 - Strap HGNC:19274|Ensembl:ENSG00000136319|HPRD:15584|Vega:OTTHUMG00000029506 14 14q11.2 tetratricopeptide repeat domain 5 protein-coding TTC5 tetratricopeptide repeat domain 5 O TPR repeat protein 5|stress-responsive activator of p300|tetratricopeptide repeat protein 5 20121230 -9606 91893 FDXACB1 hCG_2033039 - HGNC:25110|Ensembl:ENSG00000255561|Vega:OTTHUMG00000166795 11 11q23.1 ferredoxin-fold anticodon binding domain containing 1 protein-coding FDXACB1 ferredoxin-fold anticodon binding domain containing 1 O FDX-ACDB domain-containing protein 1|ferredoxin-fold anticodon-binding domain-containing protein 1|hypothetical protein BC006136 20121230 -9606 91894 C11orf52 - - HGNC:30531|Ensembl:ENSG00000149300|HPRD:14444|Vega:OTTHUMG00000166888 11 11q23.1 chromosome 11 open reading frame 52 protein-coding C11orf52 chromosome 11 open reading frame 52 O uncharacterized protein C11orf52 20121230 -9606 91937 TIMD4 - SMUCKLER|TIM4 HGNC:25132|MIM:610096|Ensembl:ENSG00000145850|HPRD:15508|Vega:OTTHUMG00000130244 5 5q33.3 T-cell immunoglobulin and mucin domain containing 4 protein-coding TIMD4 T-cell immunoglobulin and mucin domain containing 4 O T-cell immunoglobulin and mucin domain-containing protein 4|T-cell membrane protein 4|TIM-4|TIMD-4 20121230 -9606 91942 NDUFAF2 - B17.2L|MMTN|NDUFA12L|mimitin HGNC:28086|MIM:609653|Ensembl:ENSG00000164182|HPRD:14288|Vega:OTTHUMG00000131221 5 5q12.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 protein-coding NDUFAF2 NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 O Myc-induced mitochondrial protein|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2|NDUFA12-like protein|mimitin, mitochondrial 20121230 -9606 91947 ARRDC4 - - HGNC:28087|Ensembl:ENSG00000140450|HPRD:10664|Vega:OTTHUMG00000149849 15 15q26.3 arrestin domain containing 4 protein-coding ARRDC4 arrestin domain containing 4 O arrestin domain-containing protein 4 20121230 -9606 91948 LOC91948 - - - 15 15q26.2 uncharacterized LOC91948 miscRNA - - - - 20121230 -9606 91949 COG7 UNQ3082/PRO10013 CDG2E HGNC:18622|MIM:606978|Ensembl:ENSG00000168434|HPRD:07373|Vega:OTTHUMG00000094807 16 16p12.2 component of oligomeric golgi complex 7 protein-coding COG7 component of oligomeric golgi complex 7 O COG complex subunit 7|conserved oligomeric Golgi complex subunit 7 20121230 -9606 91966 CXorf40A XX-FW81066F1.1 CXorf40|EOLA1 HGNC:28089|Ensembl:ENSG00000197620|HPRD:06625|Vega:OTTHUMG00000022622 X Xq28 chromosome X open reading frame 40A protein-coding CXorf40A chromosome X open reading frame 40A O endothelial-overexpressed lipopolysaccharide-associated factor 1|protein CXorf40A 20121230 -9606 91975 ZNF300 - - HGNC:13091|MIM:612429|Ensembl:ENSG00000145908|HPRD:15764|Vega:OTTHUMG00000130076 5 5q33.1 zinc finger protein 300 protein-coding ZNF300 zinc finger protein 300 O kruppel-like zinc finger protein 20121230 -9606 91977 MYOZ3 - CS-3|CS3|FRP3 HGNC:18565|MIM:610735|Ensembl:ENSG00000164591|HPRD:17624|Vega:OTTHUMG00000130077 5 5q33.1 myozenin 3 protein-coding MYOZ3 myozenin 3 O FATZ-related protein 3|calsarcin-3|myozenin-3 20121230 -9606 91978 TPGS1 - C19orf20|GTRGEO22|PGs1 HGNC:25058|Ensembl:ENSG00000141933|HPRD:12701|Vega:OTTHUMG00000180557 19 19p13.3 tubulin polyglutamylase complex subunit 1 protein-coding TPGS1 tubulin polyglutamylase complex subunit 1 O gene trap ROSA b-geo 22 20121230 -9606 92002 FAM58A - STAR HGNC:28434|MIM:300708|Ensembl:ENSG00000147382|HPRD:06645|Vega:OTTHUMG00000024206 X Xq28 family with sequence similarity 58, member A protein-coding FAM58A family with sequence similarity 58, member A O cyclin M|cyclin-M|cyclin-related protein FAM58A 20121230 -9606 92014 SLC25A51 - CG7943|MCART1 HGNC:23323|Ensembl:ENSG00000122696|HPRD:14370|Vega:OTTHUMG00000019935 9 9p13.3-p12 solute carrier family 25, member 51 protein-coding SLC25A51 solute carrier family 25, member 51 O mitochondrial carrier triple repeat 1|mitochondrial carrier triple repeat protein 1|solute carrier family 25 member 51 20121230 -9606 92017 SNX29 - A-388D4.1|RUNDC2A HGNC:30542|Ensembl:ENSG00000048471|HPRD:17437|Vega:OTTHUMG00000129827 16 16p13.13-p13.12 sorting nexin 29 protein-coding SNX29 sorting nexin 29 O RUN domain containing 2A|RUN domain-containing protein 2A|sorting nexin-29 20121230 -9606 92070 CTBP1-AS1 - C4orf42 HGNC:28307|HPRD:14480 4 4p16.3 CTBP1 antisense RNA 1 miscRNA CTBP1-AS1 CTBP1 antisense RNA 1 O - 20121230 -9606 92086 GGTLC1 RP5-831C21.2 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 HGNC:16437|MIM:612338|Ensembl:ENSG00000149435|HPRD:17037|Vega:OTTHUMG00000032095 20 20p11.1 gamma-glutamyltransferase light chain 1 protein-coding GGTLC1 gamma-glutamyltransferase light chain 1 O gamma-glutamyl transpeptidase|gamma-glutamyltransferase-like activity 3|gamma-glutamyltransferase-like activity 4|gamma-glutamyltransferase-like protein 6 20121230 -9606 92092 ZC3HAV1L - C7orf39 HGNC:22423|Ensembl:ENSG00000146858|HPRD:14440|Vega:OTTHUMG00000157229 7 7q34 zinc finger CCCH-type, antiviral 1-like protein-coding ZC3HAV1L zinc finger CCCH-type, antiviral 1-like O zinc finger CCCH-type antiviral protein 1-like 20121230 -9606 92104 TTC30A - - HGNC:25853|Ensembl:ENSG00000197557|HPRD:08590|Vega:OTTHUMG00000132528 2 2q31.2 tetratricopeptide repeat domain 30A protein-coding TTC30A tetratricopeptide repeat domain 30A O TPR repeat protein 30A|tetratricopeptide repeat protein 30A 20121230 -9606 92105 INTS4 MSTP093 INT4|MST093 HGNC:25048|MIM:611348|Ensembl:ENSG00000149262|HPRD:12386|Vega:OTTHUMG00000166629 11 11q14.1 integrator complex subunit 4 protein-coding INTS4 integrator complex subunit 4 O MSTP093 20121230 -9606 92106 OXNAD1 - - HGNC:25128|Ensembl:ENSG00000154814|HPRD:14446|Vega:OTTHUMG00000129867 3 3p25-p24 oxidoreductase NAD-binding domain containing 1 protein-coding OXNAD1 oxidoreductase NAD-binding domain containing 1 O oxidoreductase NAD-binding domain-containing protein 1 20121230 -9606 92126 DSEL - C18orf4 HGNC:18144|MIM:611125|Ensembl:ENSG00000171451|HPRD:10720|Vega:OTTHUMG00000132804 18 18q22.1 dermatan sulfate epimerase-like protein-coding DSEL dermatan sulfate epimerase-like O NCAG1|dermatan-sulfate epimerase-like protein 20121230 -9606 92129 RIPPLY1 RP11-321G1.2 - HGNC:25117|MIM:300575|Ensembl:ENSG00000147223|Vega:OTTHUMG00000022153 X Xq22.3 ripply1 homolog (zebrafish) protein-coding RIPPLY1 ripply1 homolog (zebrafish) O protein ripply1 20121230 -9606 92140 MTDH - 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 HGNC:29608|MIM:610323|Ensembl:ENSG00000147649|HPRD:17459|Vega:OTTHUMG00000164692 8 8q22.1 metadherin protein-coding MTDH metadherin O 3D3/LYRIC|astrocyte elevated gene-1 protein|lysine-rich CEACAM1 co-isolated protein|metastasis adhesion protein|protein LYRIC 20121230 -9606 92154 MTSS1L - ABBA-1 HGNC:25094|Ensembl:ENSG00000132613|HPRD:14289|Vega:OTTHUMG00000177023 16 16q22.1 metastasis suppressor 1-like protein-coding MTSS1L metastasis suppressor 1-like O MTSS1-like protein|actin-bundling protein with BAIAP2 homology|actin-bundling with BAIAP2 homology protein 1 20121230 -9606 92162 TMEM88 - - HGNC:32371|Ensembl:ENSG00000167874|HPRD:17438|Vega:OTTHUMG00000178022 17 17p13.1 transmembrane protein 88 protein-coding TMEM88 transmembrane protein 88 O - 20121230 -9606 92170 MTG1 - GTP|GTPBP7|RP11-108K14.2 HGNC:32159|Ensembl:ENSG00000148824|Ensembl:ENSG00000254536|HPRD:11602|Vega:OTTHUMG00000019323|Vega:OTTHUMG00000166564 10 10q26.3 mitochondrial GTPase 1 homolog (S. cerevisiae) protein-coding MTG1 mitochondrial GTPase 1 homolog (S. cerevisiae) O GTP-binding protein 7 (putative)|mitochondrial GTPase 1 20121230 -9606 92181 UBTD2 SB72 DCUBP HGNC:24463|MIM:610174|Ensembl:ENSG00000168246|HPRD:13118|Vega:OTTHUMG00000130519 5 5q35.1 ubiquitin domain containing 2 protein-coding UBTD2 ubiquitin domain containing 2 O ubiquitin domain-containing protein 2|ubiquitin-like protein SB72 20121230 -9606 92196 DAPL1 - - HGNC:21490|Ensembl:ENSG00000163331|HPRD:18709|Vega:OTTHUMG00000153970 2 2q24.1 death associated protein-like 1 protein-coding DAPL1 death associated protein-like 1 O death-associated protein-like 1|early epithelial differentiation-associated protein 20121230 -9606 92211 CDHR1 - CORD15|PCDH21|PRCAD|RP65 HGNC:14550|MIM:609502|Ensembl:ENSG00000148600|HPRD:15106|Vega:OTTHUMG00000018634 10 10q23.1 cadherin-related family member 1 protein-coding CDHR1 cadherin-related family member 1 O MT-protocadherin|photoreceptor cadherin|protocadherin-21 20121230 -9606 92235 DUSP27 - - HGNC:25034|Ensembl:ENSG00000198842|Vega:OTTHUMG00000034434 1 1q22-q24 dual specificity phosphatase 27 (putative) protein-coding DUSP27 dual specificity phosphatase 27 (putative) O inactive dual specificity phosphatase 27 20121230 -9606 92241 RCSD1 RP3-503M14.1 CAPZIP|MK2S4 HGNC:28310|MIM:610579|Ensembl:ENSG00000198771|HPRD:10077|Vega:OTTHUMG00000035318 1 1q24.2 RCSD domain containing 1 protein-coding RCSD1 RCSD domain containing 1 O RCSD domain-containing protein 1|capZ-interacting protein|protein kinase substrate CapZIP|protein kinase substrate MK2S4 20121230 -9606 92249 LOC92249 - - - X Xq11.1 uncharacterized LOC92249 miscRNA - - - - 20121230 -9606 92255 LMBRD2 - - HGNC:25287|Ensembl:ENSG00000164187|HPRD:16813|Vega:OTTHUMG00000162150 5 5p13.2 LMBR1 domain containing 2 protein-coding LMBRD2 LMBR1 domain containing 2 O LMBR1 domain-containing protein 2 20121230 -9606 92259 MRPS36 DC47 MRP-S36 HGNC:16631|MIM:611996|Ensembl:ENSG00000134056|HPRD:17600|Vega:OTTHUMG00000162443 5 5q13.2 mitochondrial ribosomal protein S36 protein-coding MRPS36 mitochondrial ribosomal protein S36 O 28S ribosomal protein S36, mitochondrial|S36mt 20121230 -9606 92270 ATP6AP1L - - HGNC:28091|Ensembl:ENSG00000205464|HPRD:18710 5 5q14.2 ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding ATP6AP1L ATPase, H+ transporting, lysosomal accessory protein 1-like O V-type proton ATPase subunit S1-like protein|vacuolar proton pump subunit S1-like protein 20121230 -9606 92283 ZNF461 - GIOT-1|GIOT1 HGNC:21629|MIM:608640|Ensembl:ENSG00000197808|HPRD:16358|Vega:OTTHUMG00000180832 19 19q13.12 zinc finger protein 461 protein-coding ZNF461 zinc finger protein 461 O gonadotropin inducible transcription repressor 1|gonadotropin-inducible ovary transcription repressor 1 20121230 -9606 92285 ZNF585B - SZFP41 HGNC:30948|Ensembl:ENSG00000245680|HPRD:18354|Vega:OTTHUMG00000048165 19 19q13.12 zinc finger protein 585B protein-coding ZNF585B zinc finger protein 585B O zinc finger protein 41-like protein 20121230 -9606 92291 CAPN13 - - HGNC:16663|MIM:610228|Ensembl:ENSG00000162949|HPRD:07008|Vega:OTTHUMG00000152053 2 2p22-p21 calpain 13 protein-coding CAPN13 calpain 13 O CANP 13|calcium-activated neutral proteinase 13|calpain-13 20121230 -9606 92292 GLYATL1 - GATF-C|GNAT HGNC:30519|MIM:614761|Ensembl:ENSG00000166840|HPRD:14447|Vega:OTTHUMG00000167221 11 11q12.1 glycine-N-acyltransferase-like 1 protein-coding GLYATL1 glycine-N-acyltransferase-like 1 O acyl-CoA:glycine N-acyltransferase-like protein 1|glutamine N-acyltransferase|glycine N-acyltransferase-like protein 1 20121230 -9606 92293 TMEM132C - - HGNC:25436|Ensembl:ENSG00000181234|Vega:OTTHUMG00000163736 12 12q24.32 transmembrane protein 132C protein-coding TMEM132C transmembrane protein 132C O - 20121230 -9606 92304 SCGB3A1 UNQ629/PRO1245 HIN-1|HIN1|LU105|PnSP-2|UGRP2 HGNC:18384|MIM:606500|Ensembl:ENSG00000161055|HPRD:05932|Vega:OTTHUMG00000130936 5 5q35-qter secretoglobin, family 3A, member 1 protein-coding SCGB3A1 secretoglobin, family 3A, member 1 O cytokine HIN-1|cytokine high in normal-1|high in normal 1|pneumo secretory protein 2|secretoglobin family 3A member 1|uteroglobin-related protein 2 20121230 -9606 92305 TMEM129 - D4S2561E HGNC:25137|Ensembl:ENSG00000168936|HPRD:14290|Vega:OTTHUMG00000121150 4 4p16.3 transmembrane protein 129 protein-coding TMEM129 transmembrane protein 129 O - 20121230 -9606 92312 MEX3A - MEX-3A|RKHD4 HGNC:33482|MIM:611007|Ensembl:ENSG00000254726|Vega:OTTHUMG00000017465 1 1q22 mex-3 homolog A (C. elegans) protein-coding MEX3A mex-3 homolog A (C. elegans) O RING finger and KH domain-containing protein 4|RNA-binding protein MEX3A|ring finger and KH domain containing 4|ring finger and KH domain containing protein 20121230 -9606 92335 STRADA - LYK5|NY-BR-96|PMSE|STRAD|Stlk HGNC:30172|MIM:608626|Ensembl:ENSG00000266173|HPRD:14332|Vega:OTTHUMG00000178908 17 17q23.3 STE20-related kinase adaptor alpha protein-coding STRADA STE20-related kinase adaptor alpha O STE20-like pseudokinase|STE20-related kinase adapter protein alpha|STRAD alpha|protein kinase LYK5|serologically defined breast cancer antigen NY-BR-96 20121230 -9606 92340 C17orf72 - - HGNC:25673|Ensembl:ENSG00000224383|Vega:OTTHUMG00000178594 17 17q23.3 chromosome 17 open reading frame 72 protein-coding C17orf72 chromosome 17 open reading frame 72 O uncharacterized protein C17orf72 20121230 -9606 92342 METTL18 RP1-117P20.4 AsTP2|C1orf156|HPM1 HGNC:28793|Ensembl:ENSG00000171806|HPRD:14713|Vega:OTTHUMG00000035813 1 1q24.2 methyltransferase like 18 protein-coding METTL18 methyltransferase like 18 O arsenic-transactivated protein 2|histidine protein methyltransferase 1 homolog|methyltransferase-like protein 18 20121230 -9606 92344 GORAB - GO|NTKLBP1|SCYL1BP1 HGNC:25676|MIM:607983|Ensembl:ENSG00000120370|HPRD:12144|Vega:OTTHUMG00000035228 1 1q24.2 golgin, RAB6-interacting protein-coding GORAB golgin, RAB6-interacting O N-terminal kinase-like-binding protein 1|NTKL-binding protein 1|RAB6-interacting golgin|SCY1-like 1 binding protein 1|SCY1-like 1-binding protein 1|SCYL1-BP1|SCYL1-binding protein 1|hNTKL-BP1 20121230 -9606 92345 NAF1 - - HGNC:25126|Ensembl:ENSG00000145414|HPRD:10054|Vega:OTTHUMG00000161370 4 4q32.2 nuclear assembly factor 1 homolog (S. cerevisiae) protein-coding NAF1 nuclear assembly factor 1 homolog (S. cerevisiae) O H/ACA ribonucleoprotein complex non-core subunit NAF1 20121230 -9606 92346 C1orf105 RP1-106H8.1 - HGNC:29591|Ensembl:ENSG00000180999|HPRD:14291|Vega:OTTHUMG00000034750 1 1q24.3 chromosome 1 open reading frame 105 protein-coding C1orf105 chromosome 1 open reading frame 105 O uncharacterized protein C1orf105 20121230 -9606 92359 CRB3 UNQ588/PRO1158 - HGNC:20237|MIM:609737|Ensembl:ENSG00000130545|HPRD:16749 19 19p13.3 crumbs homolog 3 (Drosophila) protein-coding CRB3 crumbs homolog 3 (Drosophila) O crumbs protein homolog 3 20121230 -9606 92369 SPSB4 - SSB-4|SSB4 HGNC:30630|MIM:611660|Ensembl:ENSG00000175093|HPRD:18108|Vega:OTTHUMG00000160223 3 3q23 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 O SPRY domain-containing SOCS box protein 4|SPRY domain-containing SOCS box protein SSB-4 20121230 -9606 92370 ACPL2 UNQ370/PRO706 - HGNC:26303|Ensembl:ENSG00000155893|HPRD:08675|Vega:OTTHUMG00000160171 3 3q23 acid phosphatase-like 2 protein-coding ACPL2 acid phosphatase-like 2 O acid phosphatase-like protein 2 20121230 -9606 92399 MRRF - MRFF|MTRRF|RRF HGNC:7234|MIM:604602|Ensembl:ENSG00000148187|HPRD:06856|Vega:OTTHUMG00000020600 9 9q33.2 mitochondrial ribosome recycling factor protein-coding MRRF mitochondrial ribosome recycling factor O ribosome-recycling factor, mitochondrial|ribosome-releasing factor, mitochondrial 20121230 -9606 92400 RBM18 - - HGNC:28413|Ensembl:ENSG00000119446|HPRD:15224|Vega:OTTHUMG00000020602 9 9q33.2 RNA binding motif protein 18 protein-coding RBM18 RNA binding motif protein 18 O RNA-binding motif protein 18|probable RNA-binding protein 18 20121230 -9606 92421 CHMP4C - SNF7-3|Shax3|VPS32C HGNC:30599|MIM:610899|Ensembl:ENSG00000164695|HPRD:18135|Vega:OTTHUMG00000164726 8 8q21.13 charged multivesicular body protein 4C protein-coding CHMP4C charged multivesicular body protein 4C O SNF7 homolog associated with Alix 3|Snf7 homologue associated with Alix 3|charged multivesicular body protein 4c|chromatin modifying protein 4C|chromatin-modifying protein 4c|hSnf7-3|hVps32-3|vacuolar protein sorting-associated protein 32-3|vps32-3 20121230 -9606 92427 RPS2P4 - RPS2_20_1415 HGNC:19814 14 14q32.33 ribosomal protein S2 pseudogene 4 pseudo RPS2P4 ribosomal protein S2 pseudogene 4 O - 20121230 -9606 92482 BBIP1 - BBIP10|NCRNA00081|bA348N5.3 HGNC:28093|MIM:613605|Ensembl:ENSG00000214413|Vega:OTTHUMG00000019046 10 10q25.2 BBSome interacting protein 1 protein-coding BBIP1 BBSome interacting protein 1 O BBSome-interacting protein 1|BBSome-interacting protein of 10 kDa|UPF0604 protein 20121230 -9606 92483 LDHAL6B - LDH6B|LDHAL6|LDHL HGNC:21481|Ensembl:ENSG00000171989|HPRD:13981|Vega:OTTHUMG00000132714 15 15q22.2 lactate dehydrogenase A-like 6B protein-coding LDHAL6B lactate dehydrogenase A-like 6B O L-lactate dehydrogenase A-like 6B|lactate dehydrogenase A-like 6 20121230 -9606 92507 RPS4XP2 - RPS4L2|RPS4P2|RPS4Y_2_1680|dJ189G13.2 HGNC:16563 20 20p13 ribosomal protein S4X pseudogene 2 pseudo RPS4XP2 ribosomal protein S4X pseudogene 2 O - 20121230 -9606 92521 SPECC1 - CYTSB|HCMOGT-1|HCMOGT1|NSP HGNC:30615|MIM:608793|Ensembl:ENSG00000128487|HPRD:12301|Vega:OTTHUMG00000179808 17 17p11.2 sperm antigen with calponin homology and coiled-coil domains 1 protein-coding SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 O NSP5|cytokinesis and spindle organization B|cytospin-B|nuclear structure protein 5|sperm antigen HCMOGT-1|sperm antigen with calponin-like and coiled coil domains 1|structure protein NSP5a3a|structure protein NSP5a3b|structure protein NSP5b3a|structure protein NSP5b3b 20121230 -9606 92552 ATXN3L - MJDL HGNC:24173|Ensembl:ENSG00000123594|Vega:OTTHUMG00000021146 X Xp22.2 ataxin 3-like protein-coding ATXN3L ataxin 3-like O machado-Joseph disease protein 1-like|putative ataxin-3-like protein 20121230 -9606 92558 CCDC64 - BICDR-1|H_267D11.1 HGNC:28095|Ensembl:ENSG00000135127|HPRD:14292|Vega:OTTHUMG00000169311 12 12q24.23 coiled-coil domain containing 64 protein-coding CCDC64 coiled-coil domain containing 64 O BICD-related protein 1|WUGSC:H_267D11.1|bicaudal D-related protein 1|coiled-coil domain-containing protein 64A 20121230 -9606 92565 FANK1 HSD13 - HGNC:23527|MIM:611640|Ensembl:ENSG00000203780|HPRD:09945|Vega:OTTHUMG00000019241 10 10q26.2 fibronectin type III and ankyrin repeat domains 1 protein-coding FANK1 fibronectin type III and ankyrin repeat domains 1 O 1700007B22Rik|fibronectin type 3 and ankyrin repeat domains 1|fibronectin type 3 and ankyrin repeat domains protein 1 20121230 -9606 92579 G6PC3 - SCN4|UGRP HGNC:24861|MIM:611045|Ensembl:ENSG00000141349|HPRD:13556|Vega:OTTHUMG00000181805 17 17q21.31 glucose 6 phosphatase, catalytic, 3 protein-coding G6PC3 glucose 6 phosphatase, catalytic, 3 O G-6-Pase 3|G6Pase 3|G6Pase-beta|glucose-6-phosphatase 3|glucose-6-phosphatase catalytic subunit 3|ubiquitous glucose-6-phosphatase catalytic subunit-related protein|ubiquitously expressed G6Pase catalytic subunit-related protein 20121230 -9606 92591 ASB16 - - HGNC:19768|Ensembl:ENSG00000161664|HPRD:10670|Vega:OTTHUMG00000181809 17 17q21.31 ankyrin repeat and SOCS box containing 16 protein-coding ASB16 ankyrin repeat and SOCS box containing 16 O ankyrin repeat and SOCS box protein 16|ankyrin repeat and SOCS box-containing 16|ankyrin repeat and SOCS box-containing protein 16 20121230 -9606 92595 ZNF764 - - HGNC:28200|Ensembl:ENSG00000169951|HPRD:10072|Vega:OTTHUMG00000132406 16 16p11.2 zinc finger protein 764 protein-coding ZNF764 zinc finger protein 764 O - 20121230 -9606 92597 MOB1B - MATS2|MOB4A|MOBKL1A HGNC:29801|MIM:609282|Ensembl:ENSG00000173542|HPRD:17582|Vega:OTTHUMG00000160844 4 4q13.3 MOB kinase activator 1B protein-coding MOB1B MOB kinase activator 1B O MOB1 Mps One Binder homolog B|MOB1, Mps One Binder kinase activator-like 1A|mob1 homolog 1A|mob1A|mps one binder kinase activator-like 1A 20121230 -9606 92609 TIMM50 PRO1512 TIM50|TIM50L HGNC:23656|MIM:607381|Ensembl:ENSG00000105197|HPRD:12118 19 19q13.2 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) protein-coding TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) O Tim50-like protein|homolog of yeast Tim50|mitochondrial import inner membrane translocase subunit TIM50 20121230 -9606 92610 TIFA - T2BP|T6BP|TIFAA HGNC:19075|MIM:609028|Ensembl:ENSG00000145365|HPRD:09835|Vega:OTTHUMG00000161066 4 4q25 TRAF-interacting protein with forkhead-associated domain protein-coding TIFA TRAF-interacting protein with forkhead-associated domain O TRAF-interacting protein with FHA domain-containing protein A|TRAF-interacting protein with a forkhead-associated domain|TRAF2 binding protein|TRAF2-binding protein|TRAF6 binding protein|putative MAPK-activating protein PM14|putative NF-kappa-B-activating protein 20 20121230 -9606 92659 MAFG-AS1 - - HGNC:43649 17 17q25.3 MAFG antisense RNA 1 (head to head) miscRNA MAFG-AS1 MAFG antisense RNA 1 (head to head) O - 20121230 -9606 92667 C20orf72 RP11-504H3.1 bA504H3.4 HGNC:16205|Ensembl:ENSG00000125871|HPRD:12783|Vega:OTTHUMG00000031955 20 20p11.23 chromosome 20 open reading frame 72 protein-coding C20orf72 chromosome 20 open reading frame 72 O uncharacterized protein C20orf72 20121230 -9606 92675 DTD1 - C20orf88|DUEB|HARS2|bA379J5.3|bA555E18.1|pqn-68 HGNC:16219|MIM:610996|Ensembl:ENSG00000125821|Vega:OTTHUMG00000031980 20 20p11.23 D-tyrosyl-tRNA deacylase 1 protein-coding DTD1 D-tyrosyl-tRNA deacylase 1 O D-tyrosyl-tRNA deacylase 1 homolog|D-tyrosyl-tRNA(Tyr) deacylase 1|DNA-unwinding element-binding protein|histidyl-tRNA synthase-related|histidyl-tRNA synthetase 2 20121230 -9606 92682 RPS15AP1 - RPS15A_24_1692|dJ872K7.6 HGNC:16598 20 20p11.23 ribosomal protein S15a pseudogene 1 pseudo RPS15AP1 ribosomal protein S15a pseudogene 1 O - 20121230 -9606 92689 FAM114A1 - Noxp20 HGNC:25087|Ensembl:ENSG00000197712|HPRD:11282|Vega:OTTHUMG00000128583 4 4p14 family with sequence similarity 114, member A1 protein-coding FAM114A1 family with sequence similarity 114, member A1 O nervous system over-expressed protein 20|nervous system overexpressed protein 20|protein NOXP20 20121230 -9606 92691 TMEM169 - - HGNC:25130|Ensembl:ENSG00000163449|HPRD:14293|Vega:OTTHUMG00000133053 2 2q35 transmembrane protein 169 protein-coding TMEM169 transmembrane protein 169 O - 20121230 -9606 92703 TMEM183A - C1orf37 HGNC:20173|Ensembl:ENSG00000163444|HPRD:12727|Vega:OTTHUMG00000042051 1 1q32.1 transmembrane protein 183A protein-coding TMEM183A transmembrane protein 183A O - 20121230 -9606 92714 ARRDC1 RP11-48C7.5 - HGNC:28633|Ensembl:ENSG00000197070|HPRD:12491|Vega:OTTHUMG00000020993 9 9q34.3 arrestin domain containing 1 protein-coding ARRDC1 arrestin domain containing 1 O arrestin domain-containing protein 1 20121230 -9606 92715 WDR85 - C9orf112|RP11-48C7.3|RRT2 HGNC:25199|MIM:613210|Ensembl:ENSG00000148399|HPRD:12934|Vega:OTTHUMG00000020991 9 9q34.3 WD repeat domain 85 protein-coding WDR85 WD repeat domain 85 O WD repeat-containing protein 85 20121230 -9606 92736 OTOP2 - - HGNC:19657|MIM:607827|Ensembl:ENSG00000183034|HPRD:07614|Vega:OTTHUMG00000179215 17 17q25.1 otopetrin 2 protein-coding OTOP2 otopetrin 2 O otopetrin-2 20121230 -9606 92737 DNER UNQ262/PRO299 UNQ26|bet HGNC:24456|MIM:607299|Ensembl:ENSG00000187957|HPRD:09531|Vega:OTTHUMG00000153637 2 2q36.3 delta/notch-like EGF repeat containing protein-coding DNER delta/notch-like EGF repeat containing O H_NH0150O02.1|WUGSC:H_NH0150O02.1|delta and Notch-like epidermal growth factor-related receptor|delta-notch-like EGF repeat-containing transmembrane 20121230 -9606 92745 SLC38A5 PP7194 JM24|SN2|SNAT5|pp7194 HGNC:18070|MIM:300649|Ensembl:ENSG00000017483|HPRD:06718|Vega:OTTHUMG00000024117 X Xp11.23 solute carrier family 38, member 5 protein-coding SLC38A5 solute carrier family 38, member 5 O sodium-coupled neutral amino acid transporter 5|system N transporter 2 20121230 -9606 92747 BPIFB1 RP5-1187J4.9 C20orf114|LPLUNC1 HGNC:16108|Ensembl:ENSG00000125999|HPRD:12740|Vega:OTTHUMG00000032252 20 20q11.21 BPI fold containing family B, member 1 protein-coding BPIFB1 BPI fold containing family B, member 1 O BPI fold-containing family B member 1|VEMSGP|long palate, lung and nasal epithelium carcinoma associated 1|long palate, lung and nasal epithelium carcinoma-associated protein 1|von Ebner minor salivary gland protein 20121230 -9606 92749 CCDC164 - C2orf39 HGNC:24245|Ensembl:ENSG00000157856|HPRD:11312|Vega:OTTHUMG00000125531 2 2p23.3 coiled-coil domain containing 164 protein-coding CCDC164 coiled-coil domain containing 164 O coiled-coil domain-containing protein 164 20121230 -9606 92755 TUBBP1 - - HGNC:12414 8 8p12 tubulin, beta pseudogene 1 pseudo TUBBP1 tubulin, beta pseudogene 1 O - 20121230 -9606 92797 HELB - hDHB HGNC:17196|MIM:614539|Ensembl:ENSG00000127311|HPRD:09979|Vega:OTTHUMG00000169006 12 12q14.3|12q helicase (DNA) B protein-coding HELB helicase (DNA) B O DNA helicase B|helicase B 20121230 -9606 92799 SHKBP1 PP203 Sb1 HGNC:19214|Ensembl:ENSG00000160410|HPRD:15338 19 19q13.2 SH3KBP1 binding protein 1 protein-coding SHKBP1 SH3KBP1 binding protein 1 O SH3KBP1-binding protein 1 20121230 -9606 92806 CENPBD1 - - HGNC:28272|Ensembl:ENSG00000177946|HPRD:08321|Vega:OTTHUMG00000173040 16 16q24.3 CENPB DNA-binding domains containing 1 protein-coding CENPBD1 CENPB DNA-binding domains containing 1 O CENPB DNA-binding domain-containing protein 1 20121230 -9606 92815 HIST3H2A - - HGNC:20507|Ensembl:ENSG00000181218|HPRD:13660|Vega:OTTHUMG00000040046 1 1q42.13 histone cluster 3, H2a protein-coding HIST3H2A histone cluster 3, H2a O histone 3, H2a|histone H2A type 3 20121230 -9606 92822 ZNF276 - CENP-Z|CENPZ|ZFP276|ZNF477 HGNC:23330|MIM:608460|Ensembl:ENSG00000158805|HPRD:12235|Vega:OTTHUMG00000138050 16 16q24.3 zinc finger protein 276 protein-coding ZNF276 zinc finger protein 276 O centromere protein Z|zfp-276|zinc finger protein 276 homolog|zinc finger protein 477 20121230 -9606 92840 REEP6 - C19orf32|DP1L1|TB2L1 HGNC:30078|MIM:609346|Ensembl:ENSG00000115255|HPRD:16629|Vega:OTTHUMG00000180072 19 19p13.3 receptor accessory protein 6 protein-coding REEP6 receptor accessory protein 6 O deleted in polyposis 1-like 1|polyposis locus protein 1-like 1|receptor expression enhancing protein 6|receptor expression-enhancing protein 6 20121230 -9606 92856 IMP4 - BXDC4 HGNC:30856|MIM:612981|Ensembl:ENSG00000136718|HPRD:10002|Vega:OTTHUMG00000131627 2 2q21.1 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) protein-coding IMP4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) O U3 small nucleolar ribonucleoprotein protein IMP4|U3 snoRNP protein 4 homolog|U3 snoRNP protein IMP4|brix domain-containing protein 4 20121230 -9606 92906 HNRPLL BLOCK24 SRRF|hnRNPLL HGNC:25127|MIM:611208|Ensembl:ENSG00000143889|HPRD:13667|Vega:OTTHUMG00000102075 2 2p22.1 heterogeneous nuclear ribonucleoprotein L-like protein-coding HNRPLL heterogeneous nuclear ribonucleoprotein L-like O stromal RNA regulating factor|stromal RNA-regulating factor 20121230 -9606 92912 UBE2Q2 - - HGNC:19248|MIM:612501|Ensembl:ENSG00000140367|HPRD:14294|Vega:OTTHUMG00000142839 15 15q24.2 ubiquitin-conjugating enzyme E2Q family member 2 protein-coding UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 O ubiquitin carrier protein Q2|ubiquitin-conjugating enzyme E2 Q2|ubiquitin-protein ligase Q2 20121230 -9606 92922 CCDC102A - - HGNC:28097|Ensembl:ENSG00000135736|HPRD:14408|Vega:OTTHUMG00000133472 16 16q21 coiled-coil domain containing 102A protein-coding CCDC102A coiled-coil domain containing 102A O coiled-coil domain-containing protein 102A 20121230 -9606 92935 MARS2 - MetRS|mtMetRS HGNC:25133|MIM:609728|Ensembl:ENSG00000247626|HPRD:14363|Vega:OTTHUMG00000154487 2 2q33.1 methionyl-tRNA synthetase 2, mitochondrial protein-coding MARS2 methionyl-tRNA synthetase 2, mitochondrial O methionine tRNA ligase 2, mitochondrial|methionine--tRNA ligase 2|methionine--tRNA ligase, mitochondrial|methionine-tRNA ligase|methionine-tRNA synthetase 2 (mitochondrial)|methionine-tRNA synthetase 2, mitochondrial|methionyl-tRNA synthetase, mitochondrial|mitochondrial methionine--tRNA ligase|mitochondrial methionyl-tRNA synthetase 20121230 -9606 92949 ADAMTSL1 RP11-220B22.2 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN HGNC:14632|MIM:609198|Ensembl:ENSG00000178031|HPRD:16462|Vega:OTTHUMG00000019604 9 9p21.3 ADAMTS-like 1 protein-coding ADAMTSL1 ADAMTS-like 1 O ADAM-TS related protein 1|ADAMTS-like protein 1|punctin-1 20121230 -9606 92960 PEX11G - - HGNC:20208|MIM:607583|Ensembl:ENSG00000104883|HPRD:16250 19 19p13.2 peroxisomal biogenesis factor 11 gamma protein-coding PEX11G peroxisomal biogenesis factor 11 gamma O PEX11-gamma|Pex11pgamma|peroxin Pex11p gamma|peroxin-11C|peroxisomal biogenesis factor 11C|peroxisomal biogenesis factor 11G|peroxisomal membrane protein 11C|protein PEX11 homolog gamma 20121230 -9606 92973 FP588 - - - 9 9p13.3 uncharacterized LOC92973 miscRNA - - - - 20121230 -9606 92979 MARCH9 - MARCH-IX|RNF179 HGNC:25139|MIM:613336|Ensembl:ENSG00000139266|HPRD:14360|Vega:OTTHUMG00000170456 12 12q14.1 membrane-associated ring finger (C3HC4) 9 protein-coding MARCH9 membrane-associated ring finger (C3HC4) 9 O E3 ubiquitin-protein ligase MARCH9|RING finger protein 179|membrane-associated RING finger protein 9|membrane-associated RING-CH protein IX 20121230 -9606 92999 ZBTB47 - ZNF651 HGNC:26955|Ensembl:ENSG00000114853|HPRD:15888|Vega:OTTHUMG00000156207 3 3p22.1 zinc finger and BTB domain containing 47 protein-coding ZBTB47 zinc finger and BTB domain containing 47 O zinc finger and BTB domain-containing protein 47|zinc finger protein 651 20121230 -9606 93010 B3GNT7 - beta3GnT7 HGNC:18811|Ensembl:ENSG00000156966|HPRD:12512|Vega:OTTHUMG00000153880 2 2q37.1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding B3GNT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 O BGnT-7|beta 1,3-N-acetylglucosaminyltransferase 7|beta-1,3-Gn-T7|beta-1,3-N-acetylglucosaminyltransferase 7|beta3Gn-T7 20121230 -9606 93034 NT5C1B FKSG85 AIRP|CN-IB|CN1B HGNC:17818|MIM:610526|Ensembl:ENSG00000185013|HPRD:11405|Vega:OTTHUMG00000151765 2 2p24.2 5'-nucleotidase, cytosolic IB protein-coding NT5C1B 5'-nucleotidase, cytosolic IB O autoimmune infertility-related protein|cytosolic 5'-nucleotidase 1B 20121230 -9606 93035 PKHD1L1 - PKHDL1 HGNC:20313|MIM:607843|Ensembl:ENSG00000205038|HPRD:09703|Vega:OTTHUMG00000164934 8 8q23 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 protein-coding PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 O PKHD1-like protein 1|fibrocystin L|fibrocystin-L|polycystic kidney and hepatic disease 1-like protein 1|polycystic kidney and hepatic disease-like 1 20121230 -9606 93058 COQ10A UNQ6192/PRO20219 - HGNC:26515|Ensembl:ENSG00000135469|HPRD:08726|Vega:OTTHUMG00000170283 12 12q13.3 coenzyme Q10 homolog A (S. cerevisiae) protein-coding COQ10A coenzyme Q10 homolog A (S. cerevisiae) O coenzyme Q-binding protein COQ10 homolog A, mitochondrial 20121230 -9606 93081 TEX30 RP11-484I6.3 C13orf27 HGNC:25188|Ensembl:ENSG00000151287|HPRD:14295|Vega:OTTHUMG00000017306 13 13q33.1 testis expressed 30 protein-coding TEX30 testis expressed 30 O testis-expressed sequence 30 protein 20121230 -9606 93082 NEURL3 hCG_1641111 LINCR HGNC:25162|HPRD:14296 2 2q11.2 neuralized homolog 3 (Drosophila) pseudogene pseudo NEURL3 neuralized homolog 3 (Drosophila) pseudogene O - 20121230 -9606 93099 DMKN UNQ729/PRO1411 UNQ729|ZD52F10 HGNC:25063|Ensembl:ENSG00000161249|HPRD:12387|Vega:OTTHUMG00000048101 19 19q13.12 dermokine protein-coding DMKN dermokine O epidermis-specific secreted protein SK30/SK89 20121230 -9606 93100 NAPRT1 - PP3856 HGNC:30450|MIM:611552|Ensembl:ENSG00000147813|HPRD:15161|Vega:OTTHUMG00000156942 8 8q24.3 nicotinate phosphoribosyltransferase domain containing 1 protein-coding NAPRT1 nicotinate phosphoribosyltransferase domain containing 1 O FHA-HIT-interacting protein|NAPRTase|nicotinate phosphoribosyltransferase|nicotinate phosphoribosyltransferase domain-containing protein 1|nicotinic acid phosphoribosyltransferase 20121230 -9606 93107 KCNG4 - KV6.3|KV6.4 HGNC:19697|MIM:607603|Ensembl:ENSG00000168418|HPRD:16253|Vega:OTTHUMG00000137638 16 16q24.1 potassium voltage-gated channel, subfamily G, member 4 protein-coding KCNG4 potassium voltage-gated channel, subfamily G, member 4 O potassium voltage-gated channel subfamily G member 4|voltage-gated potassium channel Kv6.3|voltage-gated potassium channel subunit Kv6.4 20121230 -9606 93109 TMEM44 - - HGNC:25120|Ensembl:ENSG00000145014|HPRD:14297|Vega:OTTHUMG00000156023 3 3q29 transmembrane protein 44 protein-coding TMEM44 transmembrane protein 44 O - 20121230 -9606 93129 ORAI3 - TMEM142C HGNC:28185|MIM:610930|Ensembl:ENSG00000175938|HPRD:14431|Vega:OTTHUMG00000176768 16 16p11.2 ORAI calcium release-activated calcium modulator 3 protein-coding ORAI3 ORAI calcium release-activated calcium modulator 3 O protein orai-3|transmembrane protein 142C 20121230 -9606 93134 ZNF561 - - HGNC:28684|Ensembl:ENSG00000171469|HPRD:15843|Vega:OTTHUMG00000157054 19 19p13.2 zinc finger protein 561 protein-coding ZNF561 zinc finger protein 561 O - 20121230 -9606 93144 RPS10P5 - RPS10L|RPS10_13_1677|bA371L19.2 HGNC:15795 20 20p13 ribosomal protein S10 pseudogene 5 pseudo RPS10P5 ribosomal protein S10 pseudogene 5 O - 20121230 -9606 93145 OLFM2 - NOE2|NOELIN2|NOELIN2_V1|OlfC HGNC:17189|Ensembl:ENSG00000105088|HPRD:10127|Vega:OTTHUMG00000180390 19 19p13.2 olfactomedin 2 protein-coding OLFM2 olfactomedin 2 O neuronal olfactomedin related ER localized protein 2|noelin 2|noelin-2|olfactomedin-2 20121230 -9606 93164 HTR7P1 - HTR7P HGNC:30411 12 12p13.1 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 pseudo HTR7P1 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 O - 20121230 -9606 93166 PRDM6 - - HGNC:9350|Ensembl:ENSG00000061455|Vega:OTTHUMG00000150469 5 5q23.2 PR domain containing 6 protein-coding PRDM6 PR domain containing 6 O PR domain zinc finger protein 6|PR domain-containing protein 6|PR-domain zinc finger protein 6|putative histone-lysine N-methyltransferase PRDM6 20121230 -9606 93183 PIGM - GPI-MT-I HGNC:18858|MIM:610273|Ensembl:ENSG00000143315|HPRD:15133|Vega:OTTHUMG00000024081 1 1q23.2 phosphatidylinositol glycan anchor biosynthesis, class M protein-coding PIGM phosphatidylinositol glycan anchor biosynthesis, class M O GPI mannosyltransferase 1|GPI mannosyltransferase I|PIG-M mannosyltransferase|phosphatidylinositol-glycan biosynthesis class M protein 20121230 -9606 93185 IGSF8 RP11-536C5.3 CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL HGNC:17813|MIM:606644|Ensembl:ENSG00000162729|HPRD:09438|Vega:OTTHUMG00000024075 1 1q23.1 immunoglobulin superfamily, member 8 protein-coding IGSF8 immunoglobulin superfamily, member 8 O CD81 partner 3|glu-Trp-Ile EWI motif-containing protein 2|immunoglobulin superfamily member 8|keratinocytes-associated transmembrane protein 4|prostaglandin regulatory-like protein 20121230 -9606 93190 C1orf158 RP11-474O21.4 - HGNC:28567|Ensembl:ENSG00000157330|HPRD:14604|Vega:OTTHUMG00000001888 1 1p36.21 chromosome 1 open reading frame 158 protein-coding C1orf158 chromosome 1 open reading frame 158 O uncharacterized protein C1orf158 20121230 -9606 93202 LOC93202 - - - 10 10q26.11 thioredoxin pseudogene pseudo - - - - 20121230 -9606 93210 PGAP3 UNQ546/PRO1100 AGLA546|CAB2|PER1|PERLD1|PP1498 HGNC:23719|MIM:611801|Ensembl:ENSG00000161395|HPRD:15118|Vega:OTTHUMG00000179110 17 17q12 post-GPI attachment to proteins 3 protein-coding PGAP3 post-GPI attachment to proteins 3 O COS16 homolog|PER1-like domain-containing protein 1|gene coamplified with ERBB2 protein|hCOS16|per1-like domain containing 1|post-GPI attachment to proteins factor 3 20121230 -9606 93233 CCDC114 - - HGNC:26560|Ensembl:ENSG00000105479|HPRD:08149|Vega:OTTHUMG00000156161 19 19q13.33 coiled-coil domain containing 114 protein-coding CCDC114 coiled-coil domain containing 114 O coiled-coil domain-containing protein 114 20121230 -9606 93273 LEMD1 - CT50|LEMP-1 HGNC:18725|MIM:610480|Ensembl:ENSG00000186007|HPRD:13983|Vega:OTTHUMG00000037201 1 1q32.1 LEM domain containing 1 protein-coding LEMD1 LEM domain containing 1 O LEM domain protein 1|LEM domain-containing protein 1|cancer/testis antigen 50 20121230 -9606 93323 HAUS8 - DGT4|HICE1|NY-SAR-48 HGNC:30532|MIM:613434|Ensembl:ENSG00000131351|HPRD:11318 19 19p13.11 HAUS augmin-like complex, subunit 8 protein-coding HAUS8 HAUS augmin-like complex, subunit 8 O HAUS augmin-like complex subunit 8|HEC1/NDC80 interacting, centrosome associated 1|HEC1/NDC80-interacting centrosome-associated protein 1|Hec1-interacting and centrosome-associated 1|sarcoma antigen NY-SAR-48 20121230 -9606 93343 MVB12A - CFBP|FAM125A HGNC:25153|Ensembl:ENSG00000141971|HPRD:14298|Vega:OTTHUMG00000166252 19 19p13.11 multivesicular body subunit 12A protein-coding MVB12A multivesicular body subunit 12A O CIN85/CD2AP family binding protein|CIN85/CD2AP family-binding protein|ESCRT-I complex subunit MVB12A|family with sequence similarity 125, member A 20121230 -9606 93349 SP140L - - HGNC:25105|Ensembl:ENSG00000185404|HPRD:14299|Vega:OTTHUMG00000153730 2 2q37.1 SP140 nuclear body protein-like protein-coding SP140L SP140 nuclear body protein-like O nuclear body protein SP140-like protein 20121230 -9606 93377 OPALIN RP11-35J23.6 HTMP10|TMEM10|TMP10 HGNC:20707|Ensembl:ENSG00000197430|HPRD:15521|Vega:OTTHUMG00000018831 10 10q23-q24 oligodendrocytic myelin paranodal and inner loop protein protein-coding OPALIN oligodendrocytic myelin paranodal and inner loop protein O opalin|transmembrane protein 10|transmembrane protein TMP10 20121230 -9606 93380 MMGT1 RP11-274K13.3 EMC5|TMEM32 HGNC:28100|Ensembl:ENSG00000169446|HPRD:06626|Vega:OTTHUMG00000022499 X Xq26.3 membrane magnesium transporter 1 protein-coding MMGT1 membrane magnesium transporter 1 O ER membrane protein complex subunit 5|transmembrane protein 32 20121230 -9606 93408 MYL10 - MYLC2PL|PLRLC HGNC:29825|Ensembl:ENSG00000106436|HPRD:17620|Vega:OTTHUMG00000157137 7 7q22.1 myosin, light chain 10, regulatory protein-coding MYL10 myosin, light chain 10, regulatory O myosin light chain 2, lymphocyte-specific|myosin light chain 2, precursor lymphocyte-specific|myosin regulatory light chain 10|precursor lymphocyte-specific regulatory light chain 20121230 -9606 93426 SYCE1 RP11-108K14.6 C10orf94|CT76 HGNC:28852|MIM:611486|Ensembl:ENSG00000171772|HPRD:12598|Vega:OTTHUMG00000019321 10 10q26.3 synaptonemal complex central element protein 1 protein-coding SYCE1 synaptonemal complex central element protein 1 O cancer/testis antigen 76 20121230 -9606 93429 DKFZp434J0226 - - - 19 19q13.32 uncharacterized LOC93429 miscRNA - - - - 20121230 -9606 93432 LOC93432 - - - 7 7q34 maltase-glucoamylase (alpha-glucosidase) pseudogene pseudo - - - - 20121230 -9606 93436 ARMC6 - R30923_1 HGNC:25049|Ensembl:ENSG00000105676|HPRD:12488|Vega:OTTHUMG00000169271 19 19p13.11 armadillo repeat containing 6 protein-coding ARMC6 armadillo repeat containing 6 O armadillo repeat-containing protein 6 20121230 -9606 93444 LOC93444 - - - 15 15q22.32 uncharacterized LOC93444 unknown - - - - 20120508 -9606 93463 LOC93463 - - - 2 2q37.3 uncharacterized LOC93463 unknown - - - - 20121230 -9606 93474 ZNF670 - - HGNC:28167|Ensembl:ENSG00000135747|HPRD:11305|Vega:OTTHUMG00000040868 1 1q44 zinc finger protein 670 protein-coding ZNF670 zinc finger protein 670 O - 20121230 -9606 93487 MAPK1IP1L - C14orf32|MISS|c14_5346 HGNC:19840|Ensembl:ENSG00000168175|HPRD:12647|Vega:OTTHUMG00000171029 14 14q22.3 mitogen-activated protein kinase 1 interacting protein 1-like protein-coding MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1-like O MAPK-interacting and spindle-stabilizing protein|MAPK-interacting and spindle-stabilizing protein-like|mitogen activated protein kinase 1 interacting protein 1-like|mitogen-activated protein kinase 1-interacting protein 1-like 20121230 -9606 93492 TPTE2 RP11-408K19.2 TPIP HGNC:17299|MIM:606791|Ensembl:ENSG00000132958|HPRD:06003|Vega:OTTHUMG00000016493 13 13q12.11 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 protein-coding TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 O PTEN-like inositol lipid phosphatase|TPIP lipid phosphatase|TPTE and PTEN homologous inositol lipid phosphatase|lipid phosphatase TPIP|phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase TPTE2 20121230 -9606 93517 SDR42E1 HSPC105 - HGNC:29834|Ensembl:ENSG00000184860|HPRD:17118|Vega:OTTHUMG00000166148 16 16q23.3 short chain dehydrogenase/reductase family 42E, member 1 protein-coding SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 O short-chain dehydrogenase/reductase family 42E member 1 20121230 -9606 93550 ZFAND4 RP11-358L16.1 ANUBL1 HGNC:23504|Ensembl:ENSG00000172671|HPRD:16494|Vega:OTTHUMG00000018085 10 10q11.22 zinc finger, AN1-type domain 4 protein-coding ZFAND4 zinc finger, AN1-type domain 4 O AN1, ubiquitin-like, homolog|AN1-type zinc finger and ubiquitin domain-containing protein 1|AN1-type zinc finger and ubiquitin domain-containing protein-like 1|AN1-type zinc finger protein 4 20121230 -9606 93556 EGFEM1P hCG_1786642 C3orf50|NCRNA00259 HGNC:25149 3 3q26.2 EGF-like and EMI domain containing 1, pseudogene pseudo EGFEM1P EGF-like and EMI domain containing 1, pseudogene O - 20121230 -9606 93587 TRMT10A - RG9MTD2|TRM10 HGNC:28403|Ensembl:ENSG00000145331|HPRD:15241|Vega:OTTHUMG00000131025 4 4q23 tRNA methyltransferase 10 homolog A (S. cerevisiae) protein-coding TRMT10A tRNA methyltransferase 10 homolog A (S. cerevisiae) O RNA (guanine-9-) methyltransferase domain containing 2|RNA (guanine-9-)-methyltransferase domain-containing protein 2|tRNA methyltransferase 10 homolog A 20121230 -9606 93589 CACNA2D4 - RCD4 HGNC:20202|MIM:608171|Ensembl:ENSG00000151062|HPRD:12182|Vega:OTTHUMG00000168111 12 12p13.33 calcium channel, voltage-dependent, alpha 2/delta subunit 4 protein-coding CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 O voltage-dependent calcium channel subunit alpha-2/delta-4|voltage-gated calcium channel alpha(2)delta-4 subunit|voltage-gated calcium channel subunit alpha-2/delta-4 20121230 -9606 93594 WDR67 - Gm85 HGNC:30888|Ensembl:ENSG00000156787|HPRD:11319|Vega:OTTHUMG00000165081 8 8q24.13 WD repeat domain 67 protein-coding WDR67 WD repeat domain 67 O WD repeat-containing protein 67 20121230 -9606 93611 FBXO44 RP3-330O12.2 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a HGNC:24847|MIM:609111|Ensembl:ENSG00000132879|HPRD:16445|Vega:OTTHUMG00000002071 1 1p36.22 F-box protein 44 protein-coding FBXO44 F-box protein 44 O F-box gene 3|F-box only protein 44|F-box protein FBX30|F-box/G-domain protein 3 20121230 -9606 93621 MRFAP1 - PAM14|PGR1 HGNC:24549|Ensembl:ENSG00000179010|HPRD:17589|Vega:OTTHUMG00000125504 4 4p16.1 Morf4 family associated protein 1 protein-coding MRFAP1 Morf4 family associated protein 1 O MORF4 family-associated protein 1|Mof4 family associated protein 1|T-cell activation protein|protein associated with MRG of 14 kDa|protein associated with MRG, 14 kDa 20121230 -9606 93622 LOC93622 - - HPRD:14300 4 4p16.1 Morf4 family associated protein 1-like 1 pseudogene pseudo - - - - 20121230 -9606 93624 TADA2B - ADA2(beta)|ADA2B HGNC:30781|MIM:608790|Ensembl:ENSG00000173011|Vega:OTTHUMG00000159983 4 4p16.1 transcriptional adaptor 2B protein-coding TADA2B transcriptional adaptor 2B O ADA2-beta|ADA2-like protein beta|transcriptional adapter 2-beta|transcriptional adaptor 2 (ADA2 homolog, yeast)-beta 20121230 -9606 93627 TBCK HSPC302 TBCKL HGNC:28261|Ensembl:ENSG00000145348|HPRD:17514|Vega:OTTHUMG00000131214 4 4q24 TBC1 domain containing kinase protein-coding TBCK TBC1 domain containing kinase O TBC domain-containing protein kinase-like protein 20121230 -9606 93643 TJAP1 RP3-337H4.1 PILT|TJP4 HGNC:17949|MIM:612658|Ensembl:ENSG00000137221|HPRD:10269|Vega:OTTHUMG00000014736 6 6p21.1 tight junction associated protein 1 (peripheral) protein-coding TJAP1 tight junction associated protein 1 (peripheral) O protein incorporated later into tight junctions|tight junction protein 4 (peripheral)|tight junction-associated protein 1 20121230 -9606 93649 MYOCD - MYCD HGNC:16067|MIM:606127|Ensembl:ENSG00000141052|HPRD:09362|Vega:OTTHUMG00000058767 17 17p11.2 myocardin protein-coding MYOCD myocardin O - 20121230 -9606 93650 ACPT - - HGNC:14376|MIM:606362|Ensembl:ENSG00000142513|HPRD:06964 19 19q13.4 acid phosphatase, testicular protein-coding ACPT acid phosphatase, testicular O testicular acid phosphatase 20121230 -9606 93653 ST7-AS1 - ST7AS1|ST7OT1 HGNC:16000 7 7q31.2 ST7 antisense RNA 1 miscRNA ST7-AS1 ST7 antisense RNA 1 O - 20121230 -9606 93654 ST7-AS2 - ST7AS2|ST7OT2 HGNC:16044 7 7q31.2 ST7 antisense RNA 2 miscRNA ST7-AS2 ST7 antisense RNA 2 O - 20121230 -9606 93655 ST7-OT3 - NCRNA00026|ST7|ST7OT3 HGNC:16045 7 7q31.3 ST7 overlapping transcript 3 (non-protein coding) miscRNA ST7-OT3 ST7 overlapping transcript 3 (non-protein coding) O - 20121230 -9606 93659 CGB5 - HCG HGNC:16452|MIM:608825|Ensembl:ENSG00000189052|HPRD:12309 19 19q13.32 chorionic gonadotropin, beta polypeptide 5 protein-coding CGB5 chorionic gonadotropin, beta polypeptide 5 O chorionic gonadotropin beta 5 subunit 20121230 -9606 93661 CAPZA3 - CAPPA3|Gsg3 HGNC:24205|MIM:608722|Ensembl:ENSG00000177938|HPRD:12282|Vega:OTTHUMG00000169001 12 12p12.3 capping protein (actin filament) muscle Z-line, alpha 3 protein-coding CAPZA3 capping protein (actin filament) muscle Z-line, alpha 3 O CP-alpha-3|CapZ alpha-3|F-actin capping protein alpha-3 subunit|F-actin-capping protein subunit alpha-3|germ cell-specific protein 3 20121230 -9606 93663 ARHGAP18 - MacGAP|SENEX|bA307O14.2 HGNC:21035|MIM:613351|Ensembl:ENSG00000146376|HPRD:12474|Vega:OTTHUMG00000015547 6 6q22.33 Rho GTPase activating protein 18 protein-coding ARHGAP18 Rho GTPase activating protein 18 O rho GTPase-activating protein 18|rho-type GTPase-activating protein 18 20121230 -9606 93664 CADPS2 - - HGNC:16018|MIM:609978|Ensembl:ENSG00000081803|HPRD:12996|Vega:OTTHUMG00000157093 7 7q31.3 Ca++-dependent secretion activator 2 protein-coding CADPS2 Ca++-dependent secretion activator 2 O CAPS-2|Ca2+-dependent activator protein for secretion 2|calcium-dependent activator protein for secretion 2|calcium-dependent secretion activator 2 20121230 -9606 93668 HPYR1 - HPRG1|LINC00027|NCRNA00027 HGNC:16071 8 8q24.22 Helicobacter pylori responsive 1 (non-protein coding) miscRNA HPYR1 Helicobacter pylori responsive 1 (non-protein coding) O - 20121230 -9606 93669 C12orf9 - LPP-LRFT HGNC:15949 12 - chromosome 12 open reading frame 9 protein-coding C12orf9 chromosome 12 open reading frame 9 O - 20121130 -9606 93948 RPS23P1 - RPS23_3_930 HGNC:16043 8 8q23 ribosomal protein S23 pseudogene 1 pseudo RPS23P1 ribosomal protein S23 pseudogene 1 O - 20121230 -9606 93953 ACRC - NAAR1 HGNC:15805|MIM:300369|Ensembl:ENSG00000147174|HPRD:02298|Vega:OTTHUMG00000033327 X Xq13.1 acidic repeat containing protein-coding ACRC acidic repeat containing O acidic repeat-containing protein|putative nuclear protein 20121230 -9606 93956 AOCH - - MIM:606049 11 - Acromegaloid features, overgrowth, cleft palate, and hernia unknown - - - - 20120622 -9606 93973 ACTR8 - ARP8|INO80N|hArp8 HGNC:14672|Ensembl:ENSG00000113812|HPRD:09792|Vega:OTTHUMG00000158279 3 - ARP8 actin-related protein 8 homolog (yeast) protein-coding ACTR8 ARP8 actin-related protein 8 homolog (yeast) O INO80 complex subunit N|actin-related protein 8 20121230 -9606 93974 ATPIF1 RP5-1092A3.1 ATPI|ATPIP|IP HGNC:871|MIM:614981|Ensembl:ENSG00000130770|HPRD:16529|Vega:OTTHUMG00000003533 1 1p35.3 ATPase inhibitory factor 1 protein-coding ATPIF1 ATPase inhibitory factor 1 O ATP synthase inhibitor protein|ATPase inhibitor protein|ATPase inhibitor, mitochondrial|IF(1)|IF1|inhibitor of F(1)F(o)-ATPase 20121230 -9606 93978 CLEC6A - CLEC4N|CLECSF10 HGNC:14556|MIM:613579|Ensembl:ENSG00000205846|HPRD:16722|Vega:OTTHUMG00000168672 12 12p13 C-type lectin domain family 6, member A protein-coding CLEC6A C-type lectin domain family 6, member A O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 10|C-type lectin domain family 6 member A|C-type lectin superfamily member 10|DC-associated C-type lectin 2|dectin 2|dectin-2|dendritic cell-associated C-type lectin 2 20121230 -9606 93979 CPA5 - - HGNC:15722|MIM:609561|Ensembl:ENSG00000158525|HPRD:07097|Vega:OTTHUMG00000157824 7 7q32 carboxypeptidase A5 protein-coding CPA5 carboxypeptidase A5 O - 20121230 -9606 93980 DYRK1AIP1 - - HGNC:14401 - - DYRK1A interacting protein 1 protein-coding DYRK1AIP1 DYRK1A interacting protein 1 O - 20080828 -9606 93981 DYRK1AIP2 - - HGNC:14459 - - DYRK1A interacting protein 2 protein-coding DYRK1AIP2 DYRK1A interacting protein 2 O - 20080828 -9606 93983 DYT13 - - HGNC:3101|MIM:607671 1 1p36 dystonia 13, torsion unknown DYT13 dystonia 13, torsion O - 20120622 -9606 93985 FGS3 - - HGNC:15596|MIM:300406 X Xp22.3 FG syndrome 3 unknown FGS3 FG syndrome 3 O - 20120622 -9606 93986 FOXP2 - CAGH44|SPCH1|TNRC10 HGNC:13875|MIM:605317|Ensembl:ENSG00000128573|HPRD:05611|Vega:OTTHUMG00000023131 7 7q31 forkhead box P2 protein-coding FOXP2 forkhead box P2 O CAG repeat protein 44|forkhead box protein P2|forkhead/winged-helix transcription factor|trinucleotide repeat containing 10|trinucleotide repeat-containing gene 10 protein 20121230 -9606 93991 MRX77 - - HGNC:15824|MIM:300454 X - mental retardation, X-linked 77 unknown MRX77 mental retardation, X-linked 77 O - 20120622 -9606 93993 NDUFB3P1 - - HGNC:13673 1 1p13.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 1 pseudo NDUFB3P1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 1 O - 20121230 -9606 93994 NDUFB3P2 - - HGNC:13674 9 9q33.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 2 pseudo NDUFB3P2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 2 O - 20121230 -9606 93995 NDUFB3P4 - - HGNC:13676 14 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 4 pseudo NDUFB3P4 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 4 O - 20121230 -9606 93996 NDUFB3P3 - - HGNC:13675 14 14q22.1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 3 pseudo NDUFB3P3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 3 O - 20121230 -9606 93997 NDUFB3P5 - - HGNC:13677 X - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 5 pseudo NDUFB3P5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 5 O - 20121230 -9606 93999 OTSC2 - - HGNC:8520|MIM:605727 7 7q34-q36 otosclerosis 2 unknown OTSC2 otosclerosis 2 O - 20120622 -9606 94003 PDB4 - - HGNC:16033|MIM:606263 5 5q31 Paget disease of bone 4 unknown PDB4 Paget disease of bone 4 O - 20120622 -9606 94005 PIGS UNQ1873/PRO4316 - HGNC:14937|MIM:610271|Ensembl:ENSG00000087111|HPRD:15135|Vega:OTTHUMG00000132604 17 17p13.2 phosphatidylinositol glycan anchor biosynthesis, class S protein-coding PIGS phosphatidylinositol glycan anchor biosynthesis, class S O GPI transamidase component PIG-S|GPI transamidase subunit|phosphatidylinositol glycan, class S|phosphatidylinositol-glycan biosynthesis class S protein 20121230 -9606 94008 SCA18 - SMNA HGNC:15744|MIM:607458 7 7q22-q32 spinocerebellar ataxia 18 (sensory with neurogenic muscular atrophy) unknown SCA18 spinocerebellar ataxia 18 (sensory with neurogenic muscular atrophy) O - 20120622 -9606 94009 SERHL CTA-126B4.2 BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1 HGNC:14408|MIM:607979|HPRD:10465 22 22q13.2-q13.31 serine hydrolase-like pseudo SERHL serine hydrolase-like O - 20121230 -9606 94014 TRICY1 - - HGNC:12302|MIM:609649 3 3p24.1-p22.1 trichilemmal cyst 1 unknown TRICY1 trichilemmal cyst 1 O - 20120622 -9606 94015 TTYH2 - C17orf29 HGNC:13877|MIM:608855|Ensembl:ENSG00000141540|HPRD:16394|Vega:OTTHUMG00000166018 17 17q25.1 tweety homolog 2 (Drosophila) protein-coding TTYH2 tweety homolog 2 (Drosophila) O hTTY2|protein tweety homolog 2 20121230 -9606 94017 TRNAS1 - TRS1 HGNC:16292|MIM:606171 6 6p22.1 transfer RNA serine 1 (anticodon UGA) tRNA TRNAS1 transfer RNA serine 1 (anticodon UGA) O - 20121230 -9606 94023 DKFZp566F0947 - - - 19 19q12 uncharacterized LOC94023 miscRNA - - - - 20121230 -9606 94025 MUC16 - CA125 HGNC:15582|MIM:606154|Ensembl:ENSG00000181143 19 19p13.2 mucin 16, cell surface associated protein-coding MUC16 mucin 16, cell surface associated O CA-125|CA125 ovarian cancer antigen|MUC-16|mucin-16|ovarian cancer-related tumor marker CA125|ovarian carcinoma antigen CA125 20121230 -9606 94026 POM121L2 - POM121-L|POM121L HGNC:13973|Ensembl:ENSG00000158553|Vega:OTTHUMG00000014475 6 6p22.1 POM121 transmembrane nucleoporin-like 2 protein-coding POM121L2 POM121 transmembrane nucleoporin-like 2 O OM121 membrane glycoprotein (rat homolog)-like 2|POM121 membrane glycoprotein (rat homolog)-like 2|POM121 membrane glycoprotein-like 2|POM121-like protein 2 20121230 -9606 94027 CGB7 - CG-beta-a|CGB6 HGNC:16451|MIM:608826|Ensembl:ENSG00000196337|HPRD:12310 19 19q13.32 chorionic gonadotropin, beta polypeptide 7 protein-coding CGB7 chorionic gonadotropin, beta polypeptide 7 O chorionic gonadotropin beta 7 subunit 20121230 -9606 94030 LRRC4B - HSM|LRIG4 HGNC:25042|Ensembl:ENSG00000131409 19 19q13.33 leucine rich repeat containing 4B protein-coding LRRC4B leucine rich repeat containing 4B O NGL-3|leucine-rich repeat-containing protein 4B|leucine-rich repeats and immunoglobulin-like domains 4|netrin-G3 ligand 20121230 -9606 94031 HTRA3 - Prsp|Tasp HGNC:30406|MIM:608785|Ensembl:ENSG00000170801|HPRD:08821|Vega:OTTHUMG00000090561 4 4p16.1 HtrA serine peptidase 3 protein-coding HTRA3 HtrA serine peptidase 3 O high-temperature requirement factor A3|pregnancy-related serine protease|probable serine protease HTRA3|serine protease HTRA3 20121230 -9606 94032 CAMK2N2 - CAM-KIIN|CAMKIIN HGNC:24197|MIM:608721|Ensembl:ENSG00000163888|HPRD:16377|Vega:OTTHUMG00000156821 3 3q27.1 calcium/calmodulin-dependent protein kinase II inhibitor 2 protein-coding CAMK2N2 calcium/calmodulin-dependent protein kinase II inhibitor 2 O CaM-KII inhibitory protein 20121230 -9606 94033 FTMT - MTF HGNC:17345|MIM:608847|Ensembl:ENSG00000181867|HPRD:12316|Vega:OTTHUMG00000128912 5 5q21.3 ferritin mitochondrial protein-coding FTMT ferritin mitochondrial O ferritin H subunit|ferritin, mitochondrial|mitochondrial ferritin 20121230 -9606 94039 ZNF101 - HZF12 HGNC:12881|MIM:603983|Ensembl:ENSG00000181896|HPRD:11963|Vega:OTTHUMG00000167736 19 19p13.11 zinc finger protein 101 protein-coding ZNF101 zinc finger protein 101 O zinc finger protein 101 (Y2)|zinc finger protein 12|zinc finger protein HZF12 20121230 -9606 94056 SYAP1 PRO3113 - HGNC:16273|Ensembl:ENSG00000169895|HPRD:06733|Vega:OTTHUMG00000021192 X Xp22.2 synapse associated protein 1 protein-coding SYAP1 synapse associated protein 1 O SAP47 homolog|synapse associated protein 1, SAP47 homolog|synapse-associated protein 1 20121230 -9606 94059 LENG9 XXbac-BCX535A19.4 - HGNC:16306|Ensembl:ENSG00000182909|HPRD:13986|Vega:OTTHUMG00000065700 19 19q13.4 leukocyte receptor cluster (LRC) member 9 protein-coding LENG9 leukocyte receptor cluster (LRC) member 9 O leukocyte receptor cluster member 9 20121230 -9606 94081 SFXN1 - - HGNC:16085|Ensembl:ENSG00000164466|HPRD:18044|Vega:OTTHUMG00000130555 5 - sideroflexin 1 protein-coding SFXN1 sideroflexin 1 O TCC|sideroflexin-1|tricarboxylate carrier protein 20121230 -9606 94086 HSPB9 - CT51 HGNC:30589|MIM:608344|Ensembl:ENSG00000197723|HPRD:16319|Vega:OTTHUMG00000133500 17 17q21.2 heat shock protein, alpha-crystallin-related, B9 protein-coding HSPB9 heat shock protein, alpha-crystallin-related, B9 O cancer/testis antigen 51|heat shock protein beta-9|small heat shock protein B9 20121230 -9606 94097 SFXN5 - BBG-TCC HGNC:16073|Ensembl:ENSG00000144040|HPRD:18047|Vega:OTTHUMG00000129775 2 - sideroflexin 5 protein-coding SFXN5 sideroflexin 5 O sideroflexin-5 20121230 -9606 94101 ORMDL1 HSPC202 - HGNC:16036|MIM:610073|Ensembl:ENSG00000128699|HPRD:15092|Vega:OTTHUMG00000132661 2 2q32 ORM1-like 1 (S. cerevisiae) protein-coding ORMDL1 ORM1-like 1 (S. cerevisiae) O ORM1-like protein 1|adoplin-1 20121230 -9606 94103 ORMDL3 - - HGNC:16038|MIM:610075|Ensembl:ENSG00000172057|HPRD:17803|Vega:OTTHUMG00000133249 17 17q12 ORM1-like 3 (S. cerevisiae) protein-coding ORMDL3 ORM1-like 3 (S. cerevisiae) O ORM1-like protein 3 20121230 -9606 94104 GCFC1 - BM020|C21orf66|FSAP105|GCFC HGNC:13579|Ensembl:ENSG00000159086|HPRD:10761|Vega:OTTHUMG00000064980 21 21q21.3 GC-rich sequence DNA-binding factor 1 protein-coding GCFC1 GC-rich sequence DNA-binding factor 1 O GC-rich sequence DNA-binding factor candidate|functional spliceosome-associated protein 105 20121230 -9606 94107 TMEM203 - HBEBP1 HGNC:28217|Ensembl:ENSG00000187713|HPRD:17496|Vega:OTTHUMG00000020985 9 9q34.3 transmembrane protein 203 protein-coding TMEM203 transmembrane protein 203 O HBeAg-binding protein 1 20121230 -9606 94115 CGB8 - - HGNC:16453|MIM:608827|Ensembl:ENSG00000213030|HPRD:12311|Vega:OTTHUMG00000180609 19 19q13.32 chorionic gonadotropin, beta polypeptide 8 protein-coding CGB8 chorionic gonadotropin, beta polypeptide 8 O chorionic gonadotropin beta 8 subunit 20121230 -9606 94120 SYTL3 - SLP3 HGNC:15587|Ensembl:ENSG00000164674|HPRD:15462|Vega:OTTHUMG00000015916 6 6q25.3 synaptotagmin-like 3 protein-coding SYTL3 synaptotagmin-like 3 O exophilin-6|synaptotagmin-like protein 3 20121230 -9606 94121 SYTL4 RP11-524D16__A.2 SLP4 HGNC:15588|MIM:300723|Ensembl:ENSG00000102362|HPRD:06735|Vega:OTTHUMG00000022004 X Xq21.33 synaptotagmin-like 4 protein-coding SYTL4 synaptotagmin-like 4 O exophilin-2|granuphilin-a|synaptotagmin-like protein 4 20121230 -9606 94122 SYTL5 - slp5 HGNC:15589|Ensembl:ENSG00000147041|HPRD:06736|Vega:OTTHUMG00000033176 X Xp21.1 synaptotagmin-like 5 protein-coding SYTL5 synaptotagmin-like 5 O exophilin 9|synaptotagmin-like protein 5 20121230 -9606 94134 ARHGAP12 - - HGNC:16348|MIM:610577|Ensembl:ENSG00000165322|HPRD:06446|Vega:OTTHUMG00000017911 10 10p11.22 Rho GTPase activating protein 12 protein-coding ARHGAP12 Rho GTPase activating protein 12 O rho GTPase-activating protein 12|rho-type GTPase-activating protein 12 20121230 -9606 94137 RP1L1 - DCDC4B HGNC:15946|MIM:608581|Ensembl:ENSG00000183638|HPRD:10546|Vega:OTTHUMG00000163806 8 8p23.1 retinitis pigmentosa 1-like 1 protein-coding RP1L1 retinitis pigmentosa 1-like 1 O retinitis pigmentosa 1-like 1 protein 20121230 -9606 94138 DFNA32 - - HGNC:2804 11 11p15 deafness, autosomal dominant 32 unknown DFNA32 deafness, autosomal dominant 32 O - 20110215 -9606 94139 DFNA34 - - HGNC:2806 1 1q44 deafness, autosomal dominant 34 unknown DFNA34 deafness, autosomal dominant 34 O - 20110215 -9606 94140 DFNA35 - - HGNC:2807 - - deafness, autosomal dominant 35 unknown DFNA35 deafness, autosomal dominant 35 O - 20110215 -9606 94142 DFNA41 - - HGNC:15575|MIM:608224 12 12q24.1-q24.3 deafness, autosomal dominant 41 unknown DFNA41 deafness, autosomal dominant 41 O - 20120622 -9606 94144 CDRT2 - - HGNC:14381 17 17p12 CMT1A duplicated region transcript 2 unknown CDRT2 CMT1A duplicated region transcript 2 O - 20110702 -9606 94145 CDRT3 - - HGNC:14382 17 17p12 CMT1A duplicated region transcript 3 unknown CDRT3 CMT1A duplicated region transcript 3 O - 20120508 -9606 94148 CDRT5 - - HGNC:14384 17 17p12 CMT1A duplicated region transcript 5 unknown CDRT5 CMT1A duplicated region transcript 5 O - 20110702 -9606 94150 CDRT7 - LINC00025|NCRNA00025 HGNC:14386 17 17p12 CMT1A duplicated region transcript 7 (non-protein coding) miscRNA CDRT7 CMT1A duplicated region transcript 7 (non-protein coding) O - 20121230 -9606 94151 CDRT8 - - HGNC:14387 17 17p12 CMT1A duplicated region transcript 8 unknown CDRT8 CMT1A duplicated region transcript 8 O - 20120508 -9606 94153 CDRT10 - - HGNC:14390 17 17p12 CMT1A duplicated region transcript 10 unknown CDRT10 CMT1A duplicated region transcript 10 O - 20110702 -9606 94154 CDRT11 - - HGNC:14391 17 17p12 CMT1A duplicated region transcript 11 unknown CDRT11 CMT1A duplicated region transcript 11 O - 20110702 -9606 94155 CDRT12 - - HGNC:14392 17 17p12 CMT1A duplicated region transcript 12 unknown CDRT12 CMT1A duplicated region transcript 12 O - 20110702 -9606 94156 CDRT13 - - HGNC:14393 17 17p12 CMT1A duplicated region transcript 13 unknown CDRT13 CMT1A duplicated region transcript 13 O - 20110702 -9606 94158 CDRT15P1 - CDRT15P HGNC:33168 17 17p12 CMT1A duplicated region transcript 15 pseudogene 1 pseudo CDRT15P1 CMT1A duplicated region transcript 15 pseudogene 1 O - 20121230 -9606 94160 ABCC12 - MRP9 HGNC:14640|MIM:607041|Ensembl:ENSG00000140798|HPRD:06128|Vega:OTTHUMG00000133143 16 16q12.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 protein-coding ABCC12 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 O ATP-binding cassette sub-family C member 12|ATP-binding cassette transporter sub-family C member 12|multidrug resistance-associated protein 9 20121230 -9606 94161 SNORD46 - RNU40|RNU46|U40|U46 HGNC:10186 1 1p34.1 small nucleolar RNA, C/D box 46 snoRNA SNORD46 small nucleolar RNA, C/D box 46 O - 20121230 -9606 94162 SNORD38A - RNU38A|U38A HGNC:30355 1 1p34.1 small nucleolar RNA, C/D box 38A snoRNA SNORD38A small nucleolar RNA, C/D box 38A O - 20121230 -9606 94163 SNORD38B - RNU38B|U38B HGNC:30356 1 1p34.1 small nucleolar RNA, C/D box 38B snoRNA SNORD38B small nucleolar RNA, C/D box 38B O - 20121230 -9606 94233 OPN4 - MOP HGNC:14449|MIM:606665|Ensembl:ENSG00000122375|HPRD:05977|Vega:OTTHUMG00000018654 10 10q22 opsin 4 protein-coding OPN4 opsin 4 O melanopsin|opsin-4 20121230 -9606 94234 FOXQ1 - HFH1 HGNC:20951|MIM:612788|Ensembl:ENSG00000164379|HPRD:17015|Vega:OTTHUMG00000016160 6 6p25 forkhead box Q1 protein-coding FOXQ1 forkhead box Q1 O HFH-1|HNF-3/forkhead-like protein 1|forkhead box protein Q1|hepatocyte nuclear factor 3 forkhead homolog 1|winged helix/forkhead transcription factor 20121230 -9606 94235 GNG8 - - HGNC:19664|Ensembl:ENSG00000167414|HPRD:13593 19 19q13.32 guanine nucleotide binding protein (G protein), gamma 8 protein-coding GNG8 guanine nucleotide binding protein (G protein), gamma 8 O gamma-9|guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8 20121230 -9606 94236 DNAJA1P5 - HEJ1 HGNC:39341 1 1p22 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 pseudo DNAJA1P5 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 O - 20121230 -9606 94239 H2AFV - H2AV HGNC:20664|Ensembl:ENSG00000105968|HPRD:13623|Vega:OTTHUMG00000129217 7 7p13 H2A histone family, member V protein-coding H2AFV H2A histone family, member V O H2A.F/Z|histone H2A.F/Z|histone H2A.V|purine-rich binding element protein B 20121230 -9606 94240 EPSTI1 RP11-145J3.1 BRESI1 HGNC:16465|MIM:607441|Ensembl:ENSG00000133106|HPRD:06309|Vega:OTTHUMG00000016814 13 13q13.3 epithelial stromal interaction 1 (breast) protein-coding EPSTI1 epithelial stromal interaction 1 (breast) O epithelial stromal interaction protein 1|epithelial-stromal interaction protein 1 20121230 -9606 94241 TP53INP1 - SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 HGNC:18022|MIM:606185|Ensembl:ENSG00000164938|HPRD:09367|Vega:OTTHUMG00000164697 8 8q22 tumor protein p53 inducible nuclear protein 1 protein-coding TP53INP1 tumor protein p53 inducible nuclear protein 1 O p53-dependent damage-inducible nuclear protein 1|p53-inducible p53DINP1|stress-induced protein|tumor protein p53-inducible nuclear protein 1 20121230 -9606 94274 PPP1R14A - CPI-17|CPI17|PPP1INL HGNC:14871|MIM:608153|Ensembl:ENSG00000167641|HPRD:16291|Vega:OTTHUMG00000181892 19 19q13.1 protein phosphatase 1, regulatory (inhibitor) subunit 14A protein-coding PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A O 17 kDa PKC-potentiated inhibitory protein of PP1|17-KDa protein|17-kDa PKC-potentiated inhibitory protein of PP1|PKC-potentiated inhibitory protein of PP1|protein kinase C-potentiated inhibitor protein of 17 kDa|protein phosphatase 1 regulatory subunit 14A 20121230 -9606 94297 PPP1R11P1 - - HGNC:16326 1 1p36.12 protein phosphatase 1, regulatory (inhibitor) subunit 11 pseudogene 1 pseudo PPP1R11P1 protein phosphatase 1, regulatory (inhibitor) subunit 11 pseudogene 1 O - 20121230 -9606 94298 PPP1R11P2 RP3-453A3.1 - HGNC:16327 X Xp11.21 protein phosphatase 1, regulatory (inhibitor) subunit 11 pseudogene 2 pseudo PPP1R11P2 protein phosphatase 1, regulatory (inhibitor) subunit 11 pseudogene 2 O - 20121230 -9606 94299 TP53BP2P1 - PPP1R13AP HGNC:16328 8 8p21.3 tumor protein p53 binding protein, 2 pseudogene 1 pseudo TP53BP2P1 tumor protein p53 binding protein, 2 pseudogene 1 O - 20111005 -9606 94302 PPP1R14BP4 - - HGNC:16331 7 7p14.2 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 4 pseudo PPP1R14BP4 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 4 O - 20121230 -9606 94304 PPP1R1AP1 - - HGNC:16316 11 11q13.5 protein phosphatase 1, regulatory (inhibitor) subunit 1A pseudogene 1 pseudo PPP1R1AP1 protein phosphatase 1, regulatory (inhibitor) subunit 1A pseudogene 1 O - 20121230 -9606 94309 PPP1R2P7 - - HGNC:16322 4 - protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 7 pseudo PPP1R2P7 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 7 O - 20090331 -9606 94310 PPP1R2P8 - - HGNC:16323 5 - protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 8 pseudo PPP1R2P8 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 8 O - 20121230 -9606 94313 AUTS5 - - MIM:606053 2 2q Autism, susceptibility to, 5 unknown - - - - 20120622 -9606 94337 MNG3 - - MIM:606082 3 3q26.1-q26.3 Multinodular goiter-3 unknown - - - - 20120622 -9606 95681 CEP41 - JBTS15|TSGA14 HGNC:12370|MIM:610523|Ensembl:ENSG00000106477|HPRD:15574|Vega:OTTHUMG00000157823 7 7q32 centrosomal protein 41kDa protein-coding CEP41 centrosomal protein 41kDa O centrosomal protein 41 kDa|centrosomal protein of 41 kDa|testis specific protein A14|testis specific, 14|testis-specific gene A14 protein 20121230 -9606 96459 FNIP1 - - HGNC:29418|MIM:610594|Ensembl:ENSG00000217128|HPRD:17233|Vega:OTTHUMG00000162686 5 5q23.3 folliculin interacting protein 1 protein-coding FNIP1 folliculin interacting protein 1 O folliculin-interacting protein 1 20121230 -9606 96597 TBC1D27 - - HGNC:28104 17 17p11.2 TBC1 domain family, member 27 protein-coding TBC1D27 TBC1 domain family, member 27 O - 20121230 -9606 96610 LOC96610 - - HPRD:14302 22 22q11.22 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121230 -9606 96626 LIMS3 - PINCH-3 HGNC:30047|Ensembl:ENSG00000256977|HPRD:17277|Vega:OTTHUMG00000131197 2 2q13 LIM and senescent cell antigen-like domains 3 protein-coding LIMS3 LIM and senescent cell antigen-like domains 3 O LIM and senescent cell antigen-like-containing domain protein 3|particularly interesting new Cys-His protein 3|pinch 2 20121230 -9606 96764 TGS1 - NCOA6IP|PIMT|PIPMT HGNC:17843|MIM:606461|Ensembl:ENSG00000137574|HPRD:07567|Vega:OTTHUMG00000164294 8 8q11 trimethylguanosine synthase 1 protein-coding TGS1 trimethylguanosine synthase 1 O CLL-associated antigen KW-2|PRIP-interacting protein PIPMT|PRIP-interacting protein with methyltransferase domain|PRIP-interacting protein with methyltransferase motif|SEREX-defined|cap-specific guanine-N2 methyltransferase|hepatocellular carcinoma-associated antigen 137|nuclear receptor coactivator 6 interacting protein|nuclear receptor coactivator 6-interacting protein|trimethylguanosine synthase|trimethylguanosine synthase homolog 20121230 -9606 100917 VWSM - - MIM:604547 17 17p11.2-p11.2 Van der Woude syndrome modifier unknown - - - - 20110215 -9606 100918 NRCLP - NRCLP2 MIM:605841 4 4p13-q21 Narcolepsy, HLA-associated unknown - - - - 20120622 -9606 103910 MYL12B - MLC-B|MRLC2 HGNC:29827|MIM:609211|Ensembl:ENSG00000118680|HPRD:10095|Vega:OTTHUMG00000131510 18 18p11.31 myosin, light chain 12B, regulatory protein-coding MYL12B myosin, light chain 12B, regulatory O MLC-2|MLC-2A|MLC20|SHUJUN-1|myosin regulatory light chain 12B|myosin regulatory light chain 2|myosin regulatory light chain 2-B, smooth muscle isoform|myosin regulatory light chain 20 kDa|myosin regulatory light chain MRLC2 20121230 -9606 103911 RPS27AP1 - RPS27AP|RPS27A_6_1513 HGNC:17121 17 17p13.1 ribosomal protein S27a pseudogene 1 pseudo RPS27AP1 ribosomal protein S27a pseudogene 1 O - 20121230 -9606 112398 EGLN2 - EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1 HGNC:14660|MIM:606424|Ensembl:ENSG00000171570|HPRD:06970 19 19q13.2 egl nine homolog 2 (C. elegans) protein-coding EGLN2 egl nine homolog 2 (C. elegans) O HIF-prolyl hydroxylase 1|egl nine homolog 2|estrogen-induced tag 6|hypoxia-inducible factor prolyl hydroxylase 1|prolyl hydroxylase domain-containing protein 1 20121230 -9606 112399 EGLN3 - HIFP4H3|HIFPH3|PHD3 HGNC:14661|MIM:606426|Ensembl:ENSG00000129521|HPRD:06972|Vega:OTTHUMG00000029498 14 14q13.1 egl nine homolog 3 (C. elegans) protein-coding EGLN3 egl nine homolog 3 (C. elegans) O HIF prolyl hydroxylase 3|HIF-PH3|HIF-prolyl hydroxylase 3|HPH-1|HPH-3|egl nine homolog 3|egl nine-like protein 3 isoform|hypoxia-inducible factor prolyl hydroxylase 3|prolyl hydroxylase domain-containing protein 3 20121230 -9606 112401 BIRC8 - ILP-2|ILP2|hILP2 HGNC:14878|Ensembl:ENSG00000163098|HPRD:12525 19 - baculoviral IAP repeat containing 8 protein-coding BIRC8 baculoviral IAP repeat containing 8 O IAP-like protein 2|baculoviral IAP repeat-containing 8|baculoviral IAP repeat-containing protein 8|inhibitor of apoptosis-like protein 2|testis-specific inhibitor of apoptosis 20121230 -9606 112464 PRKCDBP - CAVIN3|HSRBC|SRBC|cavin-3 HGNC:9400|Ensembl:ENSG00000170955|HPRD:17908|Vega:OTTHUMG00000133378 11 11p15.4 protein kinase C, delta binding protein protein-coding PRKCDBP protein kinase C, delta binding protein O protein kinase C delta-binding protein|sdr-related gene product that binds to c-kinase|serum deprivation response factor-related gene product that binds to C-kinase 20121230 -9606 112476 PRRT2 - BFIC2|BFIS2|DSPB3|DYT10|EKD1|ICCA|IFITMD1|PKC HGNC:30500|MIM:614386|Ensembl:ENSG00000167371|HPRD:13995|Vega:OTTHUMG00000177142 16 16p11.2 proline-rich transmembrane protein 2 protein-coding PRRT2 proline-rich transmembrane protein 2 O dispanin subfamily B member 3|interferon induced transmembrane protein domain containing 1 20121230 -9606 112479 ERI2 - EXOD1 HGNC:30541|Ensembl:ENSG00000196678|HPRD:14456|Vega:OTTHUMG00000131557 16 16p12.3 ERI1 exoribonuclease family member 2 protein-coding ERI2 ERI1 exoribonuclease family member 2 O ERI1 exoribonuclease 2|enhanced RNAi three prime mRNA exonuclease homolog 2|exonuclease domain containing 1|exonuclease domain-containing protein 1|exoribonuclease 2 20121230 -9606 112483 SAT2 - SSAT2 HGNC:23160|MIM:611463|Ensembl:ENSG00000141504|HPRD:15296|Vega:OTTHUMG00000108152 17 17p13.1 spermidine/spermine N1-acetyltransferase family member 2 protein-coding SAT2 spermidine/spermine N1-acetyltransferase family member 2 O diamine N-acetyltransferase 2|diamine acetyltransferase 2|polyamine N-acetyltransferase 2|spermidine/spermine N(1)-acetyltransferase 2|spermidine/spermine N1-acetyltransferase 2|thialysine N-epsilon-acetyltransferase 20121230 -9606 112487 DTD2 - C14orf126 HGNC:20277|Ensembl:ENSG00000129480|HPRD:16599|Vega:OTTHUMG00000140205 14 14q12 D-tyrosyl-tRNA deacylase 2 (putative) protein-coding DTD2 D-tyrosyl-tRNA deacylase 2 (putative) O probable D-tyrosyl-tRNA(Tyr) deacylase 2 20121230 -9606 112495 GTF3C6 NPD020 C6orf51|TFIIIC35|bA397G5.3 HGNC:20872|MIM:611784|Ensembl:ENSG00000155115|HPRD:12886|Vega:OTTHUMG00000015370 6 6q21 general transcription factor IIIC, polypeptide 6, alpha 35kDa protein-coding GTF3C6 general transcription factor IIIC, polypeptide 6, alpha 35kDa O TFIIIC 35 kDa subunit|general transcription factor 3C polypeptide 6|transcription factor IIIC 35 kDa subunit|transcription factor IIIC 35kDa|transcription factor IIIC subunit 6 20121230 -9606 112574 SNX18 - SH3PX2|SH3PXD3B|SNAG1 HGNC:19245|Ensembl:ENSG00000178996|HPRD:15407|Vega:OTTHUMG00000096994 5 5q11.2 sorting nexin 18 protein-coding SNX18 sorting nexin 18 O SH3 and PX domain-containing protein 3B|sorting nexin associated golgi protein 1|sorting nexin-18|sorting nexin-associated Golgi protein 1 20121230 -9606 112597 LINC00152 - C2orf59|NCRNA00152 HGNC:28717|HPRD:14654 2 2p11.2 long intergenic non-protein coding RNA 152 miscRNA LINC00152 long intergenic non-protein coding RNA 152 O - 20121230 -9606 112609 MRAP2 - C6orf117|RP11-51G5.2|bA51G5.2 HGNC:21232|Ensembl:ENSG00000135324|HPRD:12843|Vega:OTTHUMG00000015121 6 6q14.2 melanocortin 2 receptor accessory protein 2 protein-coding MRAP2 melanocortin 2 receptor accessory protein 2 O melanocortin-2 receptor accessory protein 2 20121230 -9606 112611 RWDD2A - RWDD2|dJ747H23.2 HGNC:21385|Ensembl:ENSG00000013392|HPRD:15287|Vega:OTTHUMG00000015109 6 6q14.2 RWD domain containing 2A protein-coding RWDD2A RWD domain containing 2A O RWD domain containing 2|RWD domain-containing protein 2A 20121230 -9606 112616 CMTM7 - CKLFSF7 HGNC:19178|MIM:607890|Ensembl:ENSG00000153551|HPRD:06988|Vega:OTTHUMG00000155869 3 3p22.3 CKLF-like MARVEL transmembrane domain containing 7 protein-coding CMTM7 CKLF-like MARVEL transmembrane domain containing 7 O CKLF-like MARVEL transmembrane domain-containing protein 7|chemokine-like factor super family 7|chemokine-like factor super family member 7 variant 2|chemokine-like factor superfamily 7|chemokine-like factor superfamily member 7 20121230 -9606 112703 FAM71E1 - - HGNC:25107|Ensembl:ENSG00000142530|HPRD:18718 19 19q13.33 family with sequence similarity 71, member E1 protein-coding FAM71E1 family with sequence similarity 71, member E1 O protein FAM71E1 20121230 -9606 112714 TUBA3E - - HGNC:20765|Ensembl:ENSG00000152086|HPRD:17288|Vega:OTTHUMG00000131626 2 2q21.1 tubulin, alpha 3e protein-coding TUBA3E tubulin, alpha 3e O alpha-tubulin 3E|tubulin alpha-3E chain 20121230 -9606 112724 RDH13 PSEC0082 SDR7C3 HGNC:19978|Ensembl:ENSG00000160439|HPRD:17963|Vega:OTTHUMG00000180478 19 19q13.42 retinol dehydrogenase 13 (all-trans/9-cis) protein-coding RDH13 retinol dehydrogenase 13 (all-trans/9-cis) O retinol dehydrogenase 13|retinol dehydrogenase 13 (all-trans and 9-cis)|short chain dehydrogenase/reductase family 7C, member 3 20121230 -9606 112744 IL17F - CANDF6|IL-17F|ML-1|ML1 HGNC:16404|MIM:606496|Ensembl:ENSG00000112116|HPRD:16224|Vega:OTTHUMG00000014845 6 6p12 interleukin 17F protein-coding IL17F interleukin 17F O IL-24|cytokine ML-1|interleukin-17F|interleukin-24|mutant IL-17F 20121230 -9606 112752 IFT43 - C14orf179|CED3 HGNC:29669|MIM:614068|Ensembl:ENSG00000119650|HPRD:14449|Vega:OTTHUMG00000171613 14 14q24.3 intraflagellar transport 43 homolog (Chlamydomonas) protein-coding IFT43 intraflagellar transport 43 homolog (Chlamydomonas) O IFT complex A subunit|intraflagellar transport protein 43 homolog 20121230 -9606 112755 STX1B - STX1B1|STX1B2 HGNC:18539|MIM:601485|Ensembl:ENSG00000099365|HPRD:18126|Vega:OTTHUMG00000132391 16 16p11.2 syntaxin 1B protein-coding STX1B syntaxin 1B O FP17469|syntaxin 1B1|syntaxin 1B2|syntaxin-1B|syntaxin-1B1|syntaxin-1B2 20121230 -9606 112770 C1orf85 RP11-443G18.2 NCU-G1 HGNC:29436|Ensembl:ENSG00000198715|HPRD:14544|Vega:OTTHUMG00000019789 1 1q22 chromosome 1 open reading frame 85 protein-coding C1orf85 chromosome 1 open reading frame 85 O kidney predominant protein NCU-G1|lysosomal protein NCU-G1 20121230 -9606 112802 KRT71 - K6IRS1|KRT6IRS|KRT6IRS1 HGNC:28927|MIM:608245|Ensembl:ENSG00000139648|HPRD:09745|Vega:OTTHUMG00000167831 12 12q13.13 keratin 71 protein-coding KRT71 keratin 71 O CK-71|K71|cytokeratin-71|hK6irs|hK6irs1|keratin 6 irs|keratin, type II cytoskeletal 71|keratin-71|type II inner root sheath-specific keratin-K6irs1|type-II keratin Kb34 20121230 -9606 112812 FDX1L - FDX2 HGNC:30546|MIM:614585|Ensembl:ENSG00000267673|HPRD:14465|Vega:OTTHUMG00000141299 19 19p13.2 ferredoxin 1-like protein-coding FDX1L ferredoxin 1-like O adrenodoxin-like protein, mitochondrial|ferredoxin-1-like protein 20121230 -9606 112817 HOGA1 RP11-548K23.9 C10orf65|DHDPS2|DHDPSL|HP3|NPL2 HGNC:25155|MIM:613597|Ensembl:ENSG00000241935|HPRD:12584|Vega:OTTHUMG00000018859 10 10q24.2 4-hydroxy-2-oxoglutarate aldolase 1 protein-coding HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 O DHDPS-like protein|N-acetylneuraminate pyruvate lyase 2 (putative)|dihydrodipicolinate synthase-like, mitochondrial|dihydrodipicolinate synthetase homolog 2|probable 2-keto-4-hydroxyglutarate aldolase|probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial|probable KHG-aldolase|protein 569272 20121230 -9606 112840 WDR89 MSTP050 C14orf150 HGNC:20489|Ensembl:ENSG00000140006|HPRD:12635|Vega:OTTHUMG00000140340 14 14q23.2 WD repeat domain 89 protein-coding WDR89 WD repeat domain 89 O WD repeat-containing protein 89 20121230 -9606 112846 RBM8B - - HGNC:13426 14 14q23.1 RNA binding motif protein 8B pseudogene pseudo RBM8B RNA binding motif protein 8B pseudogene O - 20121230 -9606 112849 L3HYPDH - C14orf149 HGNC:20488|MIM:614811|Ensembl:ENSG00000126790|HPRD:08065|Vega:OTTHUMG00000028941 14 14q23.1 L-3-hydroxyproline dehydratase (trans-) protein-coding L3HYPDH L-3-hydroxyproline dehydratase (trans-) O probable proline racemase|trans-3-hydroxy-l-proline dehydratase|trans-3-hydroxyl-L-proline dehydratase|trans-L-3-hydroxyproline dehydratase 20121230 -9606 112858 TP53RK RP1-28H20.1 BUD32|C20orf64|Nori-2|Nori-2p|PRPK|dJ101A2 HGNC:16197|MIM:608679|Ensembl:ENSG00000172315|HPRD:12276|Vega:OTTHUMG00000085887 20 20q13.2 TP53 regulating kinase protein-coding TP53RK TP53 regulating kinase O TP53-regulating kinase|p53-related protein kinase 20121230 -9606 112869 CCDC101 - SGF29|STAF36 HGNC:25156|MIM:613374|Ensembl:ENSG00000176476|HPRD:13996|Vega:OTTHUMG00000131763 16 16p11.2 coiled-coil domain containing 101 protein-coding CCDC101 coiled-coil domain containing 101 O SAGA-associated factor 29 homolog|coiled-coil domain-containing protein 101 20121230 -9606 112885 PHF21B AL049760.6 BHC80L|PHF4 HGNC:25161|Ensembl:ENSG00000056487|HPRD:13997|Vega:OTTHUMG00000151199 22 22q13.31 PHD finger protein 21B protein-coding PHF21B PHD finger protein 21B O PHD finger protein 4 20121230 -9606 112936 VPS26B - Pep8b HGNC:28119|MIM:610027|Ensembl:ENSG00000151502|HPRD:14395|Vega:OTTHUMG00000167175 11 11q25 vacuolar protein sorting 26 homolog B (S. pombe) protein-coding VPS26B vacuolar protein sorting 26 homolog B (S. pombe) O vacuolar protein sorting-associated protein 26B|vesicle protein sorting 26B 20121230 -9606 112937 GLB1L3 - - HGNC:25147|Ensembl:ENSG00000166105|HPRD:08814|HPRD:13998|Vega:OTTHUMG00000133524 11 11q25 galactosidase, beta 1-like 3 protein-coding GLB1L3 galactosidase, beta 1-like 3 O beta-galactosidase-1-like protein 3|galactosidase, beta 1 like 3 20121230 -9606 112939 NACC1 - BEND8|BTBD14B|NAC-1|NAC1 HGNC:20967|MIM:610672|Ensembl:ENSG00000160877|HPRD:10692|Vega:OTTHUMG00000180748 19 19p13.2 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing protein-coding NACC1 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing O BEN domain containing 8|BTB/POZ domain-containing protein 14B|nucleus accumbens-associated protein 1|transcriptional repressor NAC1 20121230 -9606 112942 CCDC104 UNQ163/PRO189 - HGNC:30540|Ensembl:ENSG00000163001|HPRD:14445|Vega:OTTHUMG00000129339 2 2p16.1 coiled-coil domain containing 104 protein-coding CCDC104 coiled-coil domain containing 104 O coiled-coil domain-containing protein 104 20121230 -9606 112950 MED8 RP1-92O14.5 ARC32 HGNC:19971|MIM:607956|Ensembl:ENSG00000159479|HPRD:06991|Vega:OTTHUMG00000007421 1 1p34.2 mediator complex subunit 8 protein-coding MED8 mediator complex subunit 8 O activator-recruited cofactor 32 kDa component|mediator of RNA polymerase II transcription subunit 8|mediator of RNA polymerase II transcription subunit MED8|mediator of RNA polymerase II transcription, subunit 8 homolog 20121230 -9606 112970 KTI12 SBBI81 RP11-91A18.3|TOT4 HGNC:25160|Ensembl:ENSG00000198841|HPRD:14471|Vega:OTTHUMG00000008630 1 1p32.3 KTI12 homolog, chromatin associated (S. cerevisiae) protein-coding KTI12 KTI12 homolog, chromatin associated (S. cerevisiae) O protein KTI12 homolog 20121230 -9606 113000 RPUSD1 - C16orf40|RLUCL HGNC:14173|Ensembl:ENSG00000007376|HPRD:08507|Vega:OTTHUMG00000047840 16 16p13.3 RNA pseudouridylate synthase domain containing 1 protein-coding RPUSD1 RNA pseudouridylate synthase domain containing 1 O RNA pseudouridylate synthase domain-containing protein 1|ribosomal large subunit pseudouridine synthase C like|ribosomal large subunit pseudouridine synthase C-like protein 20121230 -9606 113026 PLCD3 - - HGNC:9061|MIM:608795|Ensembl:ENSG00000161714|HPRD:07146 17 17q21.31 phospholipase C, delta 3 protein-coding PLCD3 phospholipase C, delta 3 O 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-3|PLC delta3|PLC-delta-3|phosphoinositide phospholipase C-delta-3|phospholipase C-delta-3 20121230 -9606 113091 PTH2 - TIP39 HGNC:30828|MIM:608386|Ensembl:ENSG00000142538|HPRD:16328 19 19q13.33 parathyroid hormone 2 protein-coding PTH2 parathyroid hormone 2 O tuberoinfundibular 39 residue protein|tuberoinfundibular 39 residues|tuberoinfundibular peptide of 39 residues 20121230 -9606 113115 MTFR2 RP11-472E5.1 DUFD1|FAM54A HGNC:21115|Ensembl:ENSG00000146410|HPRD:16884|Vega:OTTHUMG00000015643 6 6q23.3 mitochondrial fission regulator 2 protein-coding MTFR2 mitochondrial fission regulator 2 O DUF729 domain containing 1|DUF729 domain-containing protein 1|family with sequence similarity 54, member A|protein FAM54A 20121230 -9606 113130 CDCA5 - SORORIN HGNC:14626|MIM:609374|Ensembl:ENSG00000146670|HPRD:13016|Vega:OTTHUMG00000150420 11 11q12.1 cell division cycle associated 5 protein-coding CDCA5 cell division cycle associated 5 O cell division cycle-associated protein 5|p35|sororin 20121230 -9606 113146 AHNAK2 - C14orf78 HGNC:20125|MIM:608570|Ensembl:ENSG00000185567|Vega:OTTHUMG00000170765 14 14q32.33 AHNAK nucleoprotein 2 protein-coding AHNAK2 AHNAK nucleoprotein 2 O protein AHNAK2 20121230 -9606 113157 RPLP0P2 - RPLP0L2|RPLP0_3_1146 HGNC:17960 11 11cen-q12 ribosomal protein, large, P0 pseudogene 2 pseudo RPLP0P2 ribosomal protein, large, P0 pseudogene 2 O - 20121230 -9606 113174 SAAL1 - SPACIA1 HGNC:25158|Ensembl:ENSG00000166788|HPRD:13999|Vega:OTTHUMG00000166428 11 11p15.1 serum amyloid A-like 1 protein-coding SAAL1 serum amyloid A-like 1 O protein SAAL1|synoviocyte proliferation-associated in collagen-induced arthritis 1 20121230 -9606 113177 IZUMO4 UNQ831/PRO1758 C19orf36|IMAGE:4215339 HGNC:26950|Ensembl:ENSG00000099840|HPRD:12708|Vega:OTTHUMG00000141290 19 19p13.3 IZUMO family member 4 protein-coding IZUMO4 IZUMO family member 4 O izumo sperm-egg fusion protein 4|putative SAMP14 binding protein variant 1|putative SAMP14 binding protein variant 2|sperm 22 kDa protein c113 20121230 -9606 113178 SCAMP4 - SCAMP-4 HGNC:30385|MIM:613764|Ensembl:ENSG00000227500|HPRD:11536|Vega:OTTHUMG00000154590 19 19p13.3 secretory carrier membrane protein 4 protein-coding SCAMP4 secretory carrier membrane protein 4 O secretory carrier-associated membrane protein 4 20121230 -9606 113179 ADAT3 - FWP005|MST121|MSTP121|S863-5|TAD3 HGNC:25151|Ensembl:ENSG00000213638|HPRD:14000|Vega:OTTHUMG00000154591 19 19p13.3 adenosine deaminase, tRNA-specific 3 protein-coding ADAT3 adenosine deaminase, tRNA-specific 3 O adenosine deaminase, tRNA-specific 3, TAD3 homolog|tRNA-specific adenosine deaminase 3 homolog|tRNA-specific adenosine deaminase-like protein 3|tRNA-specific adenosine-34 deaminase subunit ADAT3 20121230 -9606 113189 CHST14 UNQ1925/PRO4400 ATCS|D4ST1|HNK1ST HGNC:24464|MIM:608429|Ensembl:ENSG00000169105|HPRD:16780|Vega:OTTHUMG00000129985 15 15q15.1 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 protein-coding CHST14 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 O carbohydrate sulfotransferase 14|dermatan 4 sulfotransferase 1 20121230 -9606 113201 CASC4 UNQ2573/PRO6308 H63 HGNC:24892|Ensembl:ENSG00000166734|HPRD:11018|Vega:OTTHUMG00000131133 15 15q15.3 cancer susceptibility candidate 4 protein-coding CASC4 cancer susceptibility candidate 4 O cancer susceptibility candidate gene 4 protein|gene associated with HER-2/neu overexpression|protein CASC4 20121230 -9606 113220 KIF12 - RP11-56P10.3 HGNC:21495|MIM:611278|Ensembl:ENSG00000136883|HPRD:13914|Vega:OTTHUMG00000020533 9 9q32 kinesin family member 12 protein-coding KIF12 kinesin family member 12 O kinesin-like protein KIF12 20121230 -9606 113230 LOC113230 - - - 19 19p13.12 uncharacterized LOC113230 miscRNA - - - - 20121230 -9606 113235 SLC46A1 - HCP1|PCFT HGNC:30521|MIM:611672|Ensembl:ENSG00000076351|HPRD:14715 17 17q11.2 solute carrier family 46 (folate transporter), member 1 protein-coding SLC46A1 solute carrier family 46 (folate transporter), member 1 O G21|PCFT/HCP1|heme carrier protein 1|proton-coupled folate transporter|solute carrier family 46 member 1 20121230 -9606 113246 C12orf57 - C10|GRCC10 HGNC:29521|Ensembl:ENSG00000111678|HPRD:13609|Vega:OTTHUMG00000169017 12 12p13.31 chromosome 12 open reading frame 57 protein-coding C12orf57 chromosome 12 open reading frame 57 O likely ortholog of mouse gene rich cluster, C10|protein C10 20121230 -9606 113251 LARP4 PP13296 - HGNC:24320|Ensembl:ENSG00000161813|HPRD:17289|Vega:OTTHUMG00000163724 12 12q13.12 La ribonucleoprotein domain family, member 4 protein-coding LARP4 La ribonucleoprotein domain family, member 4 O c-Mpl binding protein|la-related protein 4 20121230 -9606 113263 GLCCI1 - FAM117C|GCTR|GIG18|TSSN1 HGNC:18713|MIM:614283|Ensembl:ENSG00000106415|HPRD:17043|Vega:OTTHUMG00000151984 7 7p21.3 glucocorticoid induced transcript 1 protein-coding GLCCI1 glucocorticoid induced transcript 1 O glucocorticoid-induced transcript 1 protein 20121230 -9606 113277 TMEM106A - - HGNC:28288|Ensembl:ENSG00000184988|HPRD:11315|Vega:OTTHUMG00000180879 17 17q21.31 transmembrane protein 106A protein-coding TMEM106A transmembrane protein 106A O - 20121230 -9606 113278 SLC52A3 - BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 HGNC:16187|MIM:613350|Ensembl:ENSG00000101276|HPRD:09843|Vega:OTTHUMG00000031647 20 20p13 solute carrier family 52, riboflavin transporter, member 3 protein-coding SLC52A3 solute carrier family 52, riboflavin transporter, member 3 O riboflavin transporter 2|solute carrier family 52 member 3 20121230 -9606 113402 SFT2D1 - C6orf83|pRGR1 HGNC:21102|Ensembl:ENSG00000198818|HPRD:12903|Vega:OTTHUMG00000016001 6 6q27 SFT2 domain containing 1 protein-coding SFT2D1 SFT2 domain containing 1 O SFT2 domain-containing protein 1|vesicle transport protein SFT2A 20121230 -9606 113419 TEX261 UNQ1882/PRO4325 TEG-261 HGNC:30712|Ensembl:ENSG00000144043|HPRD:15491|Vega:OTTHUMG00000170601 2 2p13.3 testis expressed 261 protein-coding TEX261 testis expressed 261 O protein TEX261|testis expressed sequence 261 20121230 -9606 113444 SMIM12 - C1orf212 HGNC:25154|Ensembl:ENSG00000163866|HPRD:14002|Vega:OTTHUMG00000004375 1 1p34.3 small integral membrane protein 12 protein-coding SMIM12 small integral membrane protein 12 O UPF0767 protein C1orf212 20121230 -9606 113451 ADC - AZI2|ODC-p|ODC1L HGNC:29957|MIM:608353|Ensembl:ENSG00000142920|HPRD:17657|Vega:OTTHUMG00000004130 1 1p35.1 arginine decarboxylase protein-coding ADC arginine decarboxylase O ARGDC|ODC antizyme inhibitor-2|ODC-paralogue|antizyme inhibitor 2|ornithine decarboxylase like|ornithine decarboxylase-like protein|ornithine decarboxylase-paralog 20121230 -9606 113452 TMEM54 - BCLP|CAC-1|CAC1 HGNC:24143|Ensembl:ENSG00000121900|HPRD:12524|Vega:OTTHUMG00000004016 1 1p35-p34 transmembrane protein 54 protein-coding TMEM54 transmembrane protein 54 O beta-casein-like protein|protein CAC-1 20121230 -9606 113457 TUBA3D - H2-ALPHA HGNC:24071|Ensembl:ENSG00000075886|HPRD:17085|Vega:OTTHUMG00000153600 2 2q21.1 tubulin, alpha 3d protein-coding TUBA3D tubulin, alpha 3d O alpha-tubulin isotype H2-alpha|tubulin alpha-2 chain|tubulin alpha-3C/D chain 20121230 -9606 113510 HELQ - HEL308 HGNC:18536|MIM:606769|Ensembl:ENSG00000163312|HPRD:08422|Vega:OTTHUMG00000130423 4 4q21.23 helicase, POLQ-like protein-coding HELQ helicase, POLQ-like O DNA helicase HEL308|POLQ-like helicase|helicase POLQ-like|mus308-like helicase 20121230 -9606 113540 CMTM1 - CKLFH|CKLFH1|CKLFSF1 HGNC:19172|MIM:607884|Ensembl:ENSG00000089505|HPRD:07433|Vega:OTTHUMG00000137502 16 16q21 CKLF-like MARVEL transmembrane domain containing 1 protein-coding CMTM1 CKLF-like MARVEL transmembrane domain containing 1 O CKLF-like MARVEL transmembrane domain-containing protein 1|chemokine-like factor super family 1|chemokine-like factor superfamily 1|chemokine-like factor superfamily member 1|chemokine-like factor-like protein CKLFH1 20121230 -9606 113612 CYP2U1 - P450TEC|SPG49 HGNC:20582|MIM:610670|Ensembl:ENSG00000155016|HPRD:13109|Vega:OTTHUMG00000161084 4 4q25 cytochrome P450, family 2, subfamily U, polypeptide 1 protein-coding CYP2U1 cytochrome P450, family 2, subfamily U, polypeptide 1 O cytochrome P450 2U1|spastic paraplegia 49 20121230 -9606 113622 ADPRHL1 RP11-102K13.1 ARH2 HGNC:21303|MIM:610620|Ensembl:ENSG00000153531|HPRD:12431|Vega:OTTHUMG00000017386 13 13q34 ADP-ribosylhydrolase like 1 protein-coding ADPRHL1 ADP-ribosylhydrolase like 1 O ADP-ribosyl-hydrolase|ADP-ribosylhydrolase 2|[Protein ADP-ribosylarginine] hydrolase-like protein 1 20121230 -9606 113655 MFSD3 - - HGNC:25157|Ensembl:ENSG00000167700|HPRD:14003|Vega:OTTHUMG00000165177 8 8q24.3 major facilitator superfamily domain containing 3 protein-coding MFSD3 major facilitator superfamily domain containing 3 O major facilitator superfamily domain-containing protein 3 20121230 -9606 113675 SDSL - SDH 2|SDS-RS1|TDH HGNC:30404|Ensembl:ENSG00000139410|HPRD:11542|Vega:OTTHUMG00000169551 12 12q24.13 serine dehydratase-like protein-coding SDSL serine dehydratase-like O L-serine deaminase|L-serine dehydratase/L-threonine deaminase|L-threonine dehydratase|SDH|serine dehydratase 2|serine dehydratase related sequence 1 20121230 -9606 113691 TUBA3FP - - HGNC:24067|HPRD:17517 22 22q11.21 tubulin, alpha 3f, pseudogene pseudo TUBA3FP tubulin, alpha 3f, pseudogene O - 20121230 -9606 113730 KLHDC7B - - HGNC:25145|Ensembl:ENSG00000130487|HPRD:14453|Vega:OTTHUMG00000150250 22 22q13.33 kelch domain containing 7B protein-coding KLHDC7B kelch domain containing 7B O kelch domain-containing protein 7B 20121230 -9606 113746 ODF3 - CT135|SHIPPO1|TISP50|hSHIPPO HGNC:19905|MIM:608356|HPRD:16323 11 11p15.5 outer dense fiber of sperm tails 3 protein-coding ODF3 outer dense fiber of sperm tails 3 O cancer/testis antigen 135|outer dense fiber of sperm tails protein 3|outer dense fiber protein 3|sperm tail protein SHIPPO 1|sperm tail protein SHIPPO1|transcript induced in spermiogenesis protein 50 20121230 -9606 113763 C7orf29 - - HGNC:21720|Ensembl:ENSG00000188707|HPRD:12917|Vega:OTTHUMG00000158328 7 7q36.1 chromosome 7 open reading frame 29 protein-coding C7orf29 chromosome 7 open reading frame 29 O uncharacterized protein C7orf29 20121230 -9606 113791 PIK3IP1 - HGFL|hHGFL(S) HGNC:24942|Ensembl:ENSG00000100100|HPRD:17518|Vega:OTTHUMG00000151256 22 22q12.2 phosphoinositide-3-kinase interacting protein 1 protein-coding PIK3IP1 phosphoinositide-3-kinase interacting protein 1 O kringle domain-containing protein HGFL|phosphoinositide-3-kinase-interacting protein 1 20121230 -9606 113802 HENMT1 RP11-256E16.2 C1orf59|HEN1 HGNC:26400|MIM:612178|Ensembl:ENSG00000162639|HPRD:08086|Vega:OTTHUMG00000011123 1 1p13.3 HEN1 methyltransferase homolog 1 (Arabidopsis) protein-coding HENMT1 HEN1 methyltransferase homolog 1 (Arabidopsis) O small RNA 2'-O-methyltransferase 20121230 -9606 113828 FAM83F RP3-496C20.4 - HGNC:25148|Ensembl:ENSG00000133477|HPRD:11228|Vega:OTTHUMG00000150688 22 22q13.1 family with sequence similarity 83, member F protein-coding FAM83F family with sequence similarity 83, member F O protein FAM83F 20121230 -9606 113829 SLC35A4 - - HGNC:20753|Ensembl:ENSG00000176087|HPRD:11574|Vega:OTTHUMG00000129495 5 5q31.3 solute carrier family 35, member A4 protein-coding SLC35A4 solute carrier family 35, member A4 O probable UDP-sugar transporter protein SLC35A4|solute carrier family 35 (UDP-galactose transporter), member A4|tumor rejection antigen 20121230 -9606 113835 ZNF257 - BMZF-4|BMZF4 HGNC:13498|MIM:606957|Ensembl:ENSG00000197134|HPRD:06096 19 19q13 zinc finger protein 257 protein-coding ZNF257 zinc finger protein 257 O bone marrow zinc finger 4 20121230 -9606 113877 DFNB32 - - HGNC:16360|MIM:608653 1 1p22.1-p13.3 deafness, autosomal recessive 32 unknown DFNB32 deafness, autosomal recessive 32 O - 20120622 -9606 113878 DTX2 - RNF58 HGNC:15973|MIM:613141|Ensembl:ENSG00000091073|HPRD:16841|Vega:OTTHUMG00000162594 7 7q11.23 deltex homolog 2 (Drosophila) protein-coding DTX2 deltex homolog 2 (Drosophila) O deltex2|hDTX2|probable E3 ubiquitin-protein ligase DTX2|protein deltex-2|ring finger protein 58|zinc ion binding protein 20121230 -9606 114026 ZIM3 - ZNF657 HGNC:16366|Ensembl:ENSG00000141946|HPRD:15738 19 - zinc finger, imprinted 3 protein-coding ZIM3 zinc finger, imprinted 3 O zinc finger imprinted 3|zinc finger protein 657 20121230 -9606 114034 TOE1 - - HGNC:15954|MIM:613931|Ensembl:ENSG00000132773|HPRD:18212|Vega:OTTHUMG00000007678 1 1p33 target of EGR1, member 1 (nuclear) protein-coding TOE1 target of EGR1, member 1 (nuclear) O target of EGR1 protein 1 20121230 -9606 114036 LINC00310 hCG_2036845 C21orf82|NCRNA00310 HGNC:16414 21 21q22.11 long intergenic non-protein coding RNA 310 miscRNA LINC00310 long intergenic non-protein coding RNA 310 O - 20121230 -9606 114038 LINC00313 - C21orf84|NCRNA00313 HGNC:16416|HPRD:10770 21 21q22.3 long intergenic non-protein coding RNA 313 miscRNA LINC00313 long intergenic non-protein coding RNA 313 O - 20121230 -9606 114041 C21orf88 hCG_1812842 - HGNC:16424|HPRD:09847 21 21q22.2 chromosome 21 open reading frame 88 miscRNA C21orf88 chromosome 21 open reading frame 88 O - 20121230 -9606 114042 LINC00334 - C21orf89|NCRNA00334 HGNC:16425 21 21q22.3 long intergenic non-protein coding RNA 334 unknown LINC00334 long intergenic non-protein coding RNA 334 O - 20121021 -9606 114043 C21orf90 - - HGNC:16428|HPRD:10775 21 21q22.3 chromosome 21 open reading frame 90 miscRNA C21orf90 chromosome 21 open reading frame 90 O - 20121230 -9606 114044 MCM3AP-AS1 - C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031 HGNC:16417 21 21q22.3 MCM3AP antisense RNA 1 miscRNA MCM3AP-AS1 MCM3AP antisense RNA 1 O - 20121230 -9606 114049 WBSCR22 HUSSY-03 HASJ4442|HUSSY-3|MERM1|PP3381|WBMT HGNC:16405|Ensembl:ENSG00000071462|HPRD:15659|Vega:OTTHUMG00000023306 7 - Williams Beuren syndrome chromosome region 22 protein-coding WBSCR22 Williams Beuren syndrome chromosome region 22 O Williams-Beuren candidate region putative methyltransferase|Williams-Beuren syndrome chromosomal region 22 protein|metastasis-related methyltransferase 1|uncharacterized methyltransferase WBSCR22 20121230 -9606 114086 DBA2 - - MIM:606129 8 8p23.3-p22 Diamond-Blackfan anemia 2 unknown - - - - 20120622 -9606 114088 TRIM9 - RNF91|SPRING HGNC:16288|MIM:606555|Ensembl:ENSG00000100505|HPRD:05947|Vega:OTTHUMG00000140291 14 14q22.1 tripartite motif containing 9 protein-coding TRIM9 tripartite motif containing 9 O E3 ubiquitin-protein ligase TRIM9|RING finger protein 91|homolog of rat RING finger Spring|tripartite motif-containing 9|tripartite motif-containing protein 9 20121230 -9606 114112 TXNRD3 - TGR|TR2|TRXR3 HGNC:20667|MIM:606235|Ensembl:ENSG00000197763|Vega:OTTHUMG00000162733 3 3q21.3 thioredoxin reductase 3 protein-coding TXNRD3 thioredoxin reductase 3 O thioredoxin and glutathione reductase|thioredoxin glutathione reductase|thioredoxin reductase 2|thioredoxin reductase TR2 20121230 -9606 114131 UCN3 - SCP|SPC|UCNIII HGNC:17781|MIM:605901|Ensembl:ENSG00000178473|HPRD:12066|Vega:OTTHUMG00000017594 10 10p15.1 urocortin 3 protein-coding UCN3 urocortin 3 O stresscopin|ucn III|urocortin III|urocortin-3 20121230 -9606 114132 SIGLEC11 UNQ9222/PRO28718 - HGNC:15622|MIM:607157|Ensembl:ENSG00000161640|HPRD:06196|Vega:OTTHUMG00000157077 19 19q13.33 sialic acid binding Ig-like lectin 11 protein-coding SIGLEC11 sialic acid binding Ig-like lectin 11 O sialic acid-binding Ig-like lectin 11|siglec-11 20121230 -9606 114134 SLC2A13 - HMIT HGNC:15956|MIM:611036|Ensembl:ENSG00000151229|HPRD:15363|Vega:OTTHUMG00000059743 12 12q12 solute carrier family 2 (facilitated glucose transporter), member 13 protein-coding SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 O H(+)-myo-inositol symporter|h(+)-myo-inositol cotransporter|proton (H+) myo-inositol symporter|proton myo-inositol cotransporter 20121230 -9606 114181 FAM8A5P - - HGNC:16376 6 - family with sequence similarity 8, member A5 pseudogene pseudo FAM8A5P family with sequence similarity 8, member A5 pseudogene O - 20121230 -9606 114182 FAM8A6P - - HGNC:16377 6 - family with sequence similarity 8, member A1 pseudogene pseudo FAM8A6P family with sequence similarity 8, member A6 pseudogene O - 20121230 -9606 114184 SIGLEC18P - SIGLECP1 HGNC:15491 19 19q13.41 sialic acid binding Ig-like lectin 18, pseudogene pseudo SIGLEC18P sialic acid binding Ig-like lectin 18, pseudogene O - 20121230 -9606 114185 SIGLEC26P - SIGLECP10 HGNC:15615 19 19q13.41 sialic acid binding Ig-like lectin 26, pseudogene pseudo SIGLEC26P sialic acid binding Ig-like lectin 26, pseudogene O - 20121230 -9606 114186 SIGLEC27P - SIGLECP11 HGNC:15617 19 19q13.41 sialic acid binding Ig-like lectin 27, pseudogene pseudo SIGLEC27P sialic acid binding Ig-like lectin 27, pseudogene O - 20121230 -9606 114187 SIGLEC28P - SIGLECP12 HGNC:15618 19 19q13.41 sialic acid binding Ig-like lectin 28, pseudogene pseudo SIGLEC28P sialic acid binding Ig-like lectin 28, pseudogene O - 20121230 -9606 114188 SIGLEC29P - SIGLECP13 HGNC:15619 19 19q13.41 sialic acid binding Ig-like lectin 29, pseudogene pseudo SIGLEC29P sialic acid binding Ig-like lectin 29, pseudogene O - 20121230 -9606 114189 SIGLEC31P - SIGLECP15 HGNC:16072 19 19q13.43 sialic acid binding Ig-like lectin 31, pseudogene pseudo SIGLEC31P sialic acid binding Ig-like lectin 31, pseudogene O - 20121230 -9606 114190 SIGLEC30P - SIGLECP14 HGNC:15623 1 1q24.2 sialic acid binding Ig-like lectin 30, pseudogene pseudo SIGLEC30P sialic acid binding Ig-like lectin 30, pseudogene O - 20121230 -9606 114191 SIGLEC19P - SIGLECP2 HGNC:15603 19 19q13.41 sialic acid binding Ig-like lectin 19, pseudogene pseudo SIGLEC19P sialic acid binding Ig-like lectin 19, pseudogene O - 20121230 -9606 114192 SIGLEC20P - SIGLECP1|SIGLECP4 HGNC:15609 19 19q13.41 sialic acid binding Ig-like lectin 20, pseudogene pseudo SIGLEC20P sialic acid binding Ig-like lectin 20, pseudogene O - 20121230 -9606 114194 SIGLEC21P - SIGLECP5 HGNC:15610 19 19q13.3 sialic acid binding Ig-like lectin 21, pseudogene pseudo SIGLEC21P sialic acid binding Ig-like lectin 21, pseudogene O - 20121230 -9606 114195 SIGLEC22P - SIGLECP6 HGNC:15611 19 19q13.41 sialic acid binding Ig-like lectin 22, pseudogene pseudo SIGLEC22P sialic acid binding Ig-like lectin 22, pseudogene O - 20121230 -9606 114196 SIGLEC24P - SIGLECP8 HGNC:15613 19 19q13.41 sialic acid binding Ig-like lectin 24, pseudogene pseudo SIGLEC24P sialic acid binding Ig-like lectin 24, pseudogene O - 20121230 -9606 114197 SIGLEC23P - SIGLECP7 HGNC:15612 19 19q13.41 sialic acid binding Ig-like lectin 23, pseudogene pseudo SIGLEC23P sialic acid binding Ig-like lectin 23, pseudogene O - 20121230 -9606 114198 SIGLEC25P - SIGLECP9 HGNC:15614 19 19q13.41 sialic acid binding Ig-like lectin 25, pseudogene pseudo SIGLEC25P sialic acid binding Ig-like lectin 25, pseudogene O - 20121230 -9606 114224 PRO2852 - - - 9 - uncharacterized protein PRO2852 unknown - - - - 20121230 -9606 114293 ANBC - - MIM:606179 16 16q22 Aneurysmal bone cysts unknown - - - - 20120622 -9606 114294 LACTB UNQ843/PRO1781 G24|MRPL56 HGNC:16468|MIM:608440|Ensembl:ENSG00000103642|HPRD:07466|Vega:OTTHUMG00000132807 15 15q22.1 lactamase, beta protein-coding LACTB lactamase, beta O mitochondrial 39S ribosomal protein L56|mitochondrial ribosomal protein L56|serine beta lactamase-like protein LACTB|serine beta-lactamase-like protein LACTB, mitochondrial 20121230 -9606 114299 PALM2 - AKAP2 HGNC:15845|Ensembl:ENSG00000157654|Ensembl:ENSG00000243444|HPRD:17817|Vega:OTTHUMG00000020479|Vega:OTTHUMG00000156812 9 9q31.3 paralemmin 2 protein-coding PALM2 paralemmin 2 O A kinase (PRKA) anchor protein 2|paralemmin-2 20121230 -9606 114327 EFHC1 - dJ304B14.2 HGNC:16406|MIM:608815|Ensembl:ENSG00000096093|HPRD:10583|Vega:OTTHUMG00000014848 6 6p12.3 EF-hand domain (C-terminal) containing 1 protein-coding EFHC1 EF-hand domain (C-terminal) containing 1 O EF-hand domain-containing protein 1|myoclonin-1 20121230 -9606 114335 CGB1 hCG_2000350 - HGNC:16721|MIM:608823|Ensembl:ENSG00000267631|HPRD:12307|Vega:OTTHUMG00000150186 19 19q13.32 chorionic gonadotropin, beta polypeptide 1 protein-coding CGB1 chorionic gonadotropin, beta polypeptide 1 O choriogonadotropin subunit beta variant 1 20121230 -9606 114336 CGB2 hCG_1998038 - HGNC:16722|MIM:608824|Ensembl:ENSG00000104818|HPRD:12308|Vega:OTTHUMG00000150185 19 19q13.32 chorionic gonadotropin, beta polypeptide 2 protein-coding CGB2 chorionic gonadotropin, beta polypeptide 2 O choriogonadotropin subunit beta variant 2|product of CGB2 20121230 -9606 114475 AD7 - - MIM:606187 10 10p13 Alzheimer disease 7 unknown - - - - 20120622 -9606 114477 ATOD6 - - MIM:605845 5 5q31-q33 Dermatitis, atopic, 6 unknown - - - - 20120622 -9606 114548 NLRP3 - AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|FCAS|FCU|MWS|NALP3|PYPAF1 HGNC:16400|MIM:606416|Ensembl:ENSG00000162711|HPRD:05915|Vega:OTTHUMG00000040647 1 1q44 NLR family, pyrin domain containing 3 protein-coding NLRP3 NLR family, pyrin domain containing 3 O NACHT domain-, leucine-rich repeat-, and PYD-containing protein 3|NACHT, LRR and PYD containing protein 3|NACHT, LRR and PYD domains-containing protein 3|PYRIN-containing APAF1-like protein 1|caterpiller protein 1.1|cold autoinflammatory syndrome 1 protein|cryopyrin|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 3 20121230 -9606 114568 NMTC1 - - MIM:606240 2 2q21 Nonmedullary thyroid carcinoma 1 unknown - - - - 20120622 -9606 114569 MAL2 - - HGNC:13634|MIM:609684|HPRD:14351 8 8q23 mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) O MAL proteolipid protein 2|MAL2 proteolipid protein|protein MAL2 20121230 -9606 114571 SLC22A9 - HOAT4|OAT4|OAT7|UST3H|ust3 HGNC:16261|MIM:607579|Ensembl:ENSG00000149742|HPRD:06982|Vega:OTTHUMG00000167805 11 11q13.1 solute carrier family 22 (organic anion transporter), member 9 protein-coding SLC22A9 solute carrier family 22 (organic anion transporter), member 9 O organic anion transporter 4|organic anion transporter 7|solute carrier family 22 (organic anion/cation transporter), member 9|solute carrier family 22 member 9 20121230 -9606 114599 SNORD15B - RNU15B|U15B HGNC:16649 11 11q13.4 small nucleolar RNA, C/D box 15B snoRNA SNORD15B small nucleolar RNA, C/D box 15B O - 20121230 -9606 114609 TIRAP - BACTS1|Mal|wyatt HGNC:17192|MIM:606252|Ensembl:ENSG00000150455|Vega:OTTHUMG00000140373 11 11q24.2 toll-interleukin 1 receptor (TIR) domain containing adaptor protein protein-coding TIRAP toll-interleukin 1 receptor (TIR) domain containing adaptor protein O MyD88 adapter-like protein|Toll-like receptor adaptor protein|adapter protein wyatt|adaptor protein Wyatt|toll/interleukin-1 receptor domain-containing adapter protein 20121230 -9606 114610 SAX1 - SPAX1 HGNC:16474|MIM:108600 12 12p13 spastic ataxia 1 (autosomal dominant) unknown SAX1 spastic ataxia 1 (autosomal dominant) O - 20120622 -9606 114614 MIR155HG - BIC|MIRHG2|NCRNA00172 HGNC:35460 21 - MIR155 host gene (non-protein coding) miscRNA MIR155HG MIR155 host gene (non-protein coding) O - 20121230 -9606 114625 ERMAP - PRO2801|RD|SC HGNC:15743|MIM:609017|Ensembl:ENSG00000164010|HPRD:12355|Vega:OTTHUMG00000007619 1 1p34.2 erythroblast membrane-associated protein (Scianna blood group) protein-coding ERMAP erythroblast membrane-associated protein (Scianna blood group) O Radin blood group (Rd)|Scianna blood group (Sc)|erythroid membrane-associated protein|radin blood group antigen|scianna blood group antigen 20121230 -9606 114655 SNORD73B - RNU73B|U73B HGNC:30357 4 4q31.3 small nucleolar RNA, C/D box U73B (pseudogene) pseudo SNORD73B small nucleolar RNA, C/D box U73B (pseudogene) O - 20121230 -9606 114657 COX7BP1 - bK714B7.1 HGNC:16529 22 22q13 cytochrome c oxidase subunit VIIb pseudogene 1 pseudo COX7BP1 cytochrome c oxidase subunit VIIb pseudogene 1 O - 20121230 -9606 114659 LRRC37B - - HGNC:29070|Ensembl:ENSG00000185158|HPRD:14004|Vega:OTTHUMG00000132785 17 - leucine rich repeat containing 37B protein-coding LRRC37B leucine rich repeat containing 37B O C66 SLIT-like testicular protein|leucine-rich repeat-containing protein 37B 20121230 -9606 114757 CYGB - HGB|STAP HGNC:16505|MIM:608759|Ensembl:ENSG00000161544|HPRD:06479|Vega:OTTHUMG00000180289 17 17q25 cytoglobin protein-coding CYGB cytoglobin O histoglobin|stellate cell activation-associated protein 20121230 -9606 114758 CSPG4P1Y - CSPG4LY|CSPG4LYP1|CSPG4P1|CSPG4PY1 HGNC:16478|MIM:400034 Y Yq11.23 chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked pseudo CSPG4P1Y chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked O - 20121209 -9606 114760 TTTY3 - LINC00121|NCRNA00121|TTTY3A|TTY3 HGNC:16480|MIM:400036 Y Yq11.23 testis-specific transcript, Y-linked 3 (non-protein coding) miscRNA TTTY3 testis-specific transcript, Y-linked 3 (non-protein coding) O - 20121209 -9606 114761 TTTY4 - LINC00123|NCRNA00123|TTTY4A|TTY4 HGNC:16481|MIM:400037 Y Yq11.2 testis-specific transcript, Y-linked 4 (non-protein coding) miscRNA TTTY4 testis-specific transcript, Y-linked 4 (non-protein coding) O - 20121230 -9606 114769 CARD16 - COP|COP1|PSEUDO-ICE HGNC:33701|Ensembl:ENSG00000204397|HPRD:16740|Vega:OTTHUMG00000166157 11 - caspase recruitment domain family, member 16 protein-coding CARD16 caspase recruitment domain family, member 16 O CARD only domain-containing protein 1|CARD only protein|caspase recruitment domain-containing protein 16|caspase-1 dominant-negative inhibitor pseudo-ICE|caspase-1 inhibitor COP|pseudo interleukin-1 beta converting enzyme|pseudo interleukin-1beta converting enzyme 20121230 -9606 114770 PGLYRP2 UNQ3103/PRO10102 HMFT0141|PGLYRPL|PGRP-L|PGRPL|TAGL-like|tagL|tagL-alpha|tagl-beta HGNC:30013|MIM:608199|Ensembl:ENSG00000161031|HPRD:10495|Vega:OTTHUMG00000150690 19 19p13.12 peptidoglycan recognition protein 2 protein-coding PGLYRP2 peptidoglycan recognition protein 2 O N-acetylmuramoyl-L-alanine amidase|peptidoglycan recognition protein L|peptidoglycan recognition protein long 20121230 -9606 114771 PGLYRP3 - PGRP-Ialpha|PGRPIA HGNC:30014|MIM:608197|Ensembl:ENSG00000159527|HPRD:16297|Vega:OTTHUMG00000014044 1 1q21 peptidoglycan recognition protein 3 protein-coding PGLYRP3 peptidoglycan recognition protein 3 O PGLYRPIalpha|PGRP-I-alpha|peptidoglycan recognition protein I alpha|peptidoglycan recognition protein I-alpha|peptidoglycan recognition protein intermediate alpha|peptidoglycan recognition protein-I-alpha 20121230 -9606 114780 PKD1L2 - PC1L2 HGNC:21715|MIM:607894|Ensembl:ENSG00000166473|HPRD:06990|Vega:OTTHUMG00000166126 16 16q23.2 polycystic kidney disease 1-like 2 protein-coding PKD1L2 polycystic kidney disease 1-like 2 O PC1-like 2 protein|polycystic kidney disease protein 1-like 2|polycystin-1L2 20121230 -9606 114781 BTBD9 RP3-322I12.1 dJ322I12.1 HGNC:21228|MIM:611237|Ensembl:ENSG00000183826|HPRD:12543|Vega:OTTHUMG00000014634 6 6p21 BTB (POZ) domain containing 9 protein-coding BTBD9 BTB (POZ) domain containing 9 O BTB/POZ domain-containing protein 9 20121230 -9606 114783 LMTK3 - LMR3|TYKLM3 HGNC:19295|Ensembl:ENSG00000142235 19 19q13.33 lemur tyrosine kinase 3 protein-coding LMTK3 lemur tyrosine kinase 3 O serine/threonine-protein kinase LMTK3 20121230 -9606 114784 CSMD2 RP11-26F12.1 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 HGNC:19290|MIM:608398|Ensembl:ENSG00000121904|HPRD:13094|Vega:OTTHUMG00000011135 1 1p34.3 CUB and Sushi multiple domains 2 protein-coding CSMD2 CUB and Sushi multiple domains 2 O CUB and Sushi (SCR repeat) domain|CUB and sushi domain-containing protein 2|CUB and sushi multiple domains protein 2 20121230 -9606 114785 MBD6 - - HGNC:20445|Ensembl:ENSG00000166987|HPRD:11296|Vega:OTTHUMG00000170099 12 - methyl-CpG binding domain protein 6 protein-coding MBD6 methyl-CpG binding domain protein 6 O methyl-CpG-binding domain protein 6|methyl-CpG-binding protein MBD6 20121230 -9606 114786 XKR4 - XRG4 HGNC:29394|Ensembl:ENSG00000206579|HPRD:17228|Vega:OTTHUMG00000164288 8 8q12.1 XK, Kell blood group complex subunit-related family, member 4 protein-coding XKR4 XK, Kell blood group complex subunit-related family, member 4 O X Kell blood group precursor-related family, member 4|XK-related protein 4 20121230 -9606 114787 GPRIN1 - GRIN1 HGNC:24835|MIM:611239|Ensembl:ENSG00000169258|HPRD:11169|Vega:OTTHUMG00000130659 5 5q35.2 G protein regulated inducer of neurite outgrowth 1 protein-coding GPRIN1 G protein regulated inducer of neurite outgrowth 1 O G protein-regulated inducer of neurite outgrowth 1 20121230 -9606 114788 CSMD3 - - HGNC:19291|MIM:608399|Ensembl:ENSG00000164796|HPRD:16329|Vega:OTTHUMG00000157027 8 8q23.3 CUB and Sushi multiple domains 3 protein-coding CSMD3 CUB and Sushi multiple domains 3 O CUB and sushi domain-containing protein 3|CUB and sushi multiple domains protein 3 20121230 -9606 114789 SLC25A25 UNQ549/PRO1106 MCSC|PCSCL|RP11-395P17.4|SCAMC-2 HGNC:20663|MIM:608745|Ensembl:ENSG00000148339|HPRD:10573|Vega:OTTHUMG00000020736 9 9q34.11 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 protein-coding SLC25A25 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 O calcium-binding mitochondrial carrier protein SCaMC-2|mitochondrial ATP-Mg/Pi carrier protein 3|mitochondrial Ca(2+)-dependent solute carrier protein 3|short calcium-binding mitochondrial carrier 2|small calcium-binding mitochondrial carrier 2|solute carrier family 25, member 25 20121230 -9606 114790 STK11IP - LIP1|LKB1IP|STK11IP1 HGNC:19184|MIM:607172|Ensembl:ENSG00000144589|HPRD:06207|Vega:OTTHUMG00000059239 2 2q35 serine/threonine kinase 11 interacting protein protein-coding STK11IP serine/threonine kinase 11 interacting protein O LKB1 interacting protein|LKB1-interacting protein 1|STK11 interacting protein|serine/threonine kinase 11-interacting protein|serine/threonine-protein kinase 11-interacting protein 20121230 -9606 114791 TUBGCP5 - GCP5 HGNC:18600|MIM:608147|Ensembl:ENSG00000153575|HPRD:12177|Vega:OTTHUMG00000129007 15 15q11.2 tubulin, gamma complex associated protein 5 protein-coding TUBGCP5 tubulin, gamma complex associated protein 5 O GCP-5|gamma-tubulin complex component 5|gamma-tubulin complex component GCP5 20121230 -9606 114792 KLHL32 RP1-39B17.1 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 HGNC:21221|Ensembl:ENSG00000186231|HPRD:13898|Vega:OTTHUMG00000015247 6 6q16.1 kelch-like 32 (Drosophila) protein-coding KLHL32 kelch-like 32 (Drosophila) O BTB and kelch domain containing 5|BTB and kelch domain-containing protein 5|kelch-like protein 32 20121230 -9606 114793 FMNL2 - FHOD2 HGNC:18267|Ensembl:ENSG00000157827|HPRD:13545|Vega:OTTHUMG00000154035 2 2q23.3 formin-like 2 protein-coding FMNL2 formin-like 2 O formin homology 2 domain containing 2|formin homology 2 domain-containing protein 2|formin-like protein 2 20121230 -9606 114794 ELFN2 - LRRC62|PPP1R29|dJ63G5.3 HGNC:29396|Ensembl:ENSG00000166897|HPRD:17229 22 22q13.1 extracellular leucine-rich repeat and fibronectin type III domain containing 2 protein-coding ELFN2 extracellular leucine-rich repeat and fibronectin type III domain containing 2 O dJ63G5.3 (putative Leucine rich protein)|extracellular leucine-rich repeat and fibronectin type III containing 2|extracellular leucine-rich repeat and fibronectin type III domain-containing protein 2|leucine rich repeat containing 62|leucine-rich repeat and fibronectin type-III domain-containing protein 6|leucine-rich repeat-containing protein 62|protein phosphatase 1 regulatory subunit 29|protein phosphatase 1, regulatory subunit 29 20121230 -9606 114795 TMEM132B - - HGNC:29397|Ensembl:ENSG00000139364|HPRD:17230|Vega:OTTHUMG00000168520 12 12q24.31 transmembrane protein 132B protein-coding TMEM132B transmembrane protein 132B O - 20121230 -9606 114796 PSMG3-AS1 - - HGNC:22230 7 7p22.3 PSMG3 antisense RNA 1 (head to head) miscRNA PSMG3-AS1 PSMG3 antisense RNA 1 (head to head) O - 20121230 -9606 114798 SLITRK1 UNQ233/PRO266 LRRC12|RP11-395N17.1|TTM HGNC:20297|MIM:609678|Ensembl:ENSG00000178235|HPRD:18063|Vega:OTTHUMG00000017149 13 13q31.1 SLIT and NTRK-like family, member 1 protein-coding SLITRK1 SLIT and NTRK-like family, member 1 O SLIT and NTRK-like protein 1|leucine-rich repeat-containing protein 12|slit and trk like gene 1 20121230 -9606 114799 ESCO1 - A930014I12Rik|CTF|ECO1|EFO1|ESO1 HGNC:24645|MIM:609674|Ensembl:ENSG00000141446|HPRD:16868|Vega:OTTHUMG00000178919 18 18q11.2 establishment of cohesion 1 homolog 1 (S. cerevisiae) protein-coding ESCO1 establishment of cohesion 1 homolog 1 (S. cerevisiae) O CTF7 homolog 1|ECO1 homolog 1|EFO1p|ESO1 homolog 1|N-acetyltransferase ESCO1|establishment factor-like protein 1|hEFO1 20121230 -9606 114800 CCDC85A - - HGNC:29400|Ensembl:ENSG00000055813|Vega:OTTHUMG00000152033 2 2p16.1 coiled-coil domain containing 85A protein-coding CCDC85A coiled-coil domain containing 85A O coiled-coil domain-containing protein 85A 20121230 -9606 114801 TMEM200A HBE61 KIAA1913|TTMA|TTMC HGNC:21075|Ensembl:ENSG00000164484|HPRD:13901|Vega:OTTHUMG00000015557 6 6q23.1 transmembrane protein 200A protein-coding TMEM200A transmembrane protein 200A O two transmembrane C 20121230 -9606 114803 MYSM1 - 2A-DUB|2ADUB|RP4-592A1.1 HGNC:29401|MIM:612176|Ensembl:ENSG00000162601|Vega:OTTHUMG00000009533 1 1p32.1 Myb-like, SWIRM and MPN domains 1 protein-coding MYSM1 Myb-like, SWIRM and MPN domains 1 O histone H2A deubiquitinase MYSM1|myb-like, SWIRM and MPN domain-containing protein 1 20121230 -9606 114804 RNF157 - - HGNC:29402|Ensembl:ENSG00000141576|HPRD:15259|Vega:OTTHUMG00000132627 17 17q25.1 ring finger protein 157 protein-coding RNF157 ring finger protein 157 O RING finger protein 157 20121230 -9606 114805 GALNT13 - GalNAc-T13|H_NH0187G20.1|WUGSC:H_NH0187G20.1 HGNC:23242|MIM:608369|Ensembl:ENSG00000144278|HPRD:16325|Vega:OTTHUMG00000131917 2 2q24.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) protein-coding GALNT13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) O GalNAc transferase 13|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13|polypeptide GalNAc transferase 13|polypeptide N-acetylgalactosaminyltransferase 13|pp-GaNTase 13|protein-UDP acetylgalactosaminyltransferase 13 20121230 -9606 114814 GNRHR2 - GnRH-II-R HGNC:16341|MIM:612875|HPRD:11780 1 1q12 gonadotropin-releasing hormone (type 2) receptor 2 pseudo GNRHR2 gonadotropin-releasing hormone (type 2) receptor 2 O - 20121230 -9606 114815 SORCS1 RP11-446H13.1 hSorCS HGNC:16697|MIM:606283|Ensembl:ENSG00000108018|HPRD:12098|Vega:OTTHUMG00000019018 10 10q23-q25 sortilin-related VPS10 domain containing receptor 1 protein-coding SORCS1 sortilin-related VPS10 domain containing receptor 1 O VPS10 domain receptor protein SORCS 1|VPS10 domain-containing receptor SorCS1 20121230 -9606 114817 CSPG4P5 - - HGNC:29403|HPRD:17231 15 15q25.2 chondroitin sulfate proteoglycan 4 pseudogene 5 pseudo CSPG4P5 chondroitin sulfate proteoglycan 4 pseudogene 5 O - 20121230 -9606 114818 KLHL29 - KBTBD9 HGNC:29404|Ensembl:ENSG00000119771|Vega:OTTHUMG00000151899 2 2p24.1 kelch-like 29 (Drosophila) protein-coding KLHL29 kelch-like 29 (Drosophila) O kelch repeat and BTB (POZ) domain containing 9|kelch repeat and BTB domain-containing protein 9|kelch-like protein 29 20121230 -9606 114819 CROCCP3 - CROCCL2|dJ798A10.2 HGNC:29405 1 1p36.13 ciliary rootlet coiled-coil, rootletin pseudogene 3 pseudo CROCCP3 ciliary rootlet coiled-coil, rootletin pseudogene 3 O - 20121230 -9606 114821 SCAND3 - ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3 HGNC:13851|Ensembl:ENSG00000232040|HPRD:11720|Vega:OTTHUMG00000016237 6 6p22.1 SCAN domain containing 3 protein-coding SCAND3 SCAN domain containing 3 O SCAN domain-containing protein 3|dJ1186N24.3 (novel zinc finger protein)|zinc finger protein 305 pseudogene 2|zinc finger protein 452 20121230 -9606 114822 RHPN1 - ODF5|RHOPHILIN|RHPN HGNC:19973|MIM:601031|Ensembl:ENSG00000158106|HPRD:17973|Vega:OTTHUMG00000165006 8 8q24.3 rhophilin, Rho GTPase binding protein 1 protein-coding RHPN1 rhophilin, Rho GTPase binding protein 1 O GTP-Rho-binding protein 1|outer dense fiber of sperm tails 5|rhophilin 1|rhophilin-1 20121230 -9606 114823 LENG8 XXbac-BCX535A19.3 pp13842 HGNC:15500|Ensembl:ENSG00000167615|HPRD:11226|Vega:OTTHUMG00000065548 19 19q13.42 leukocyte receptor cluster (LRC) member 8 protein-coding LENG8 leukocyte receptor cluster (LRC) member 8 O leukocyte receptor cluster member 8 20121230 -9606 114824 PNMA5 - - HGNC:18743|Ensembl:ENSG00000198883|HPRD:06678|Vega:OTTHUMG00000024184 X Xq28 paraneoplastic Ma antigen family member 5 protein-coding PNMA5 paraneoplastic Ma antigen family member 5 O paraneoplastic antigen-like protein 5|tumor antigen BJ-HCC-25 20121230 -9606 114825 PWWP2A - MST101 HGNC:29406|Ensembl:ENSG00000170234|Vega:OTTHUMG00000163546 5 5q33.3 PWWP domain containing 2A protein-coding PWWP2A PWWP domain containing 2A O MSTP101|PWWP domain-containing protein 2A 20121230 -9606 114826 SMYD4 - ZMYND21 HGNC:21067|Ensembl:ENSG00000186532|HPRD:18079|Vega:OTTHUMG00000090570 17 17p13.3 SET and MYND domain containing 4 protein-coding SMYD4 SET and MYND domain containing 4 O SET and MYND domain-containing protein 4 20121230 -9606 114827 FHAD1 RP3-467K16.1 - HGNC:29408|Ensembl:ENSG00000142621|Vega:OTTHUMG00000002088 1 1p36.21 forkhead-associated (FHA) phosphopeptide binding domain 1 protein-coding FHAD1 forkhead-associated (FHA) phosphopeptide binding domain 1 O FHA domain-containing protein 1|forkhead-associated domain-containing protein 1 20121230 -9606 114836 SLAMF6 RP11-528G1.1 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 HGNC:21392|MIM:606446|Ensembl:ENSG00000162739|HPRD:05920|Vega:OTTHUMG00000022729 1 1q23.2 SLAM family member 6 protein-coding SLAMF6 SLAM family member 6 O NK-T-B-antigen|NTBA receptor|activating NK receptor|natural killer-, T- and B-cell antigen 20121230 -9606 114876 OSBPL1A - ORP-1|ORP1|OSBPL1B HGNC:16398|MIM:606730|Ensembl:ENSG00000141447|HPRD:09472|Vega:OTTHUMG00000131944 18 18q11.1 oxysterol binding protein-like 1A protein-coding OSBPL1A oxysterol binding protein-like 1A O OSBP-related protein 1|oxysterol binding protein-like 1B|oxysterol-binding protein-related protein 1|oxysterol-binding protein-related protein 1 variant 1|oxysterol-binding protein-related protein 1 variant 2 20121230 -9606 114879 OSBPL5 - OBPH1|ORP5 HGNC:16392|MIM:606733|Ensembl:ENSG00000021762|HPRD:09475|Vega:OTTHUMG00000011702 11 11p15.4 oxysterol binding protein-like 5 protein-coding OSBPL5 oxysterol binding protein-like 5 O ORP-5|OSBP-related protein 5|oxysterol-binding protein homolog 1|oxysterol-binding protein homologue 1|oxysterol-binding protein-related protein 5 20121230 -9606 114880 OSBPL6 - ORP6 HGNC:16388|MIM:606734|Ensembl:ENSG00000079156|HPRD:09476|Vega:OTTHUMG00000132579 2 2q32.1 oxysterol binding protein-like 6 protein-coding OSBPL6 oxysterol binding protein-like 6 O ORP-6|OSBP-related protein 6|oxysterol-binding protein-related protein 6 20121230 -9606 114881 OSBPL7 - ORP7 HGNC:16387|MIM:606735|Ensembl:ENSG00000006025|HPRD:09477|Vega:OTTHUMG00000178288 17 17q21 oxysterol binding protein-like 7 protein-coding OSBPL7 oxysterol binding protein-like 7 O ORP-7|OSBP-related protein 7|oxysterol-binding protein-related protein 7 20121230 -9606 114882 OSBPL8 - MST120|MSTP120|ORP8|OSBP10 HGNC:16396|MIM:606736|Ensembl:ENSG00000091039|HPRD:09478|Vega:OTTHUMG00000169876 12 12q14 oxysterol binding protein-like 8 protein-coding OSBPL8 oxysterol binding protein-like 8 O ORP-8|OSBP-related protein 8|oxysterol-binding protein-related protein 8 20121230 -9606 114883 OSBPL9 RP4-657D16.1 ORP-9|ORP9 HGNC:16386|MIM:606737|Ensembl:ENSG00000117859|HPRD:09479|Vega:OTTHUMG00000008234 1 1p32.3 oxysterol binding protein-like 9 protein-coding OSBPL9 oxysterol binding protein-like 9 O OSBP-related protein 9|oxysterol-binding protein-related protein 9 20121230 -9606 114884 OSBPL10 - ORP10|OSBP9 HGNC:16395|MIM:606738|Ensembl:ENSG00000144645|HPRD:09480|Vega:OTTHUMG00000130672 3 3p22.3 oxysterol binding protein-like 10 protein-coding OSBPL10 oxysterol binding protein-like 10 O ORP-10|OSBP-related protein 10|oxysterol-binding protein-related protein 10 20121230 -9606 114885 OSBPL11 - ORP-11|ORP11|OSBP12|TCCCIA00292 HGNC:16397|MIM:606739|Ensembl:ENSG00000144909|HPRD:09481|Vega:OTTHUMG00000159571 3 3q21 oxysterol binding protein-like 11 protein-coding OSBPL11 oxysterol binding protein-like 11 O OSBP-related protein 11|oxysterol-binding protein-related protein 11 20121230 -9606 114890 MRSS - - MIM:300360 X Xq24 Mental retardation, X-linked, with short stature unknown - - - - 20120622 -9606 114897 C1QTNF1 UNQ310/PRO353 CTRP1|GIP|ZSIG37 HGNC:14324|MIM:610365|Ensembl:ENSG00000173918|Vega:OTTHUMG00000177533 17 17q25.3 C1q and tumor necrosis factor related protein 1 protein-coding C1QTNF1 C1q and tumor necrosis factor related protein 1 O G protein coupled receptor interacting protein|complement C1q tumor necrosis factor-related protein 1|g protein-coupled receptor-interacting protein 20121230 -9606 114898 C1QTNF2 UNQ6349/PRO21054 CTRP2|zacrp2 HGNC:14325|Ensembl:ENSG00000145861|HPRD:12715|Vega:OTTHUMG00000130323 5 5q33.3 C1q and tumor necrosis factor related protein 2 protein-coding C1QTNF2 C1q and tumor necrosis factor related protein 2 O complement C1q tumor necrosis factor-related protein 2|complement-c1q tumor necrosis factor-related protein 2 20121230 -9606 114899 C1QTNF3 UNQ753/PRO1484 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 HGNC:14326|MIM:612045|Ensembl:ENSG00000082196|HPRD:12716|Vega:OTTHUMG00000090735 5 5p13 C1q and tumor necrosis factor related protein 3 protein-coding C1QTNF3 C1q and tumor necrosis factor related protein 3 O cartonectin|collagenous repeat-containing sequence 26 kDa protein|collagenous repeat-containing sequence of 26-kDa|complement C1q tumor necrosis factor-related protein 3|secretory protein CORS26 20121230 -9606 114900 C1QTNF4 - CTRP4|ZACRP4 HGNC:14346|MIM:614911|Ensembl:ENSG00000172247|HPRD:12717|Vega:OTTHUMG00000166895 11 11q11 C1q and tumor necrosis factor related protein 4 protein-coding C1QTNF4 C1q and tumor necrosis factor related protein 4 O complement C1q tumor necrosis factor-related protein 4|complement-c1q tumor necrosis factor-related protein 4 20121230 -9606 114902 C1QTNF5 UNQ303/PRO344 CTRP5|LORD HGNC:14344|MIM:608752|Ensembl:ENSG00000223953|HPRD:10575 11 11q23.3 C1q and tumor necrosis factor related protein 5 protein-coding C1QTNF5 C1q and tumor necrosis factor related protein 5 O complement C1q tumor necrosis factor-related protein 5 20121230 -9606 114904 C1QTNF6 UNQ581/PRO1151 CTFP6|CTRP6|ZACRP6 HGNC:14343|MIM:614910|Ensembl:ENSG00000133466|HPRD:12718|Vega:OTTHUMG00000150538 22 22q13.1 C1q and tumor necrosis factor related protein 6 protein-coding C1QTNF6 C1q and tumor necrosis factor related protein 6 O complement C1q tumor necrosis factor-related protein 6|complement-c1q tumor necrosis factor-related protein 6 20121230 -9606 114905 C1QTNF7 - CTRP7|ZACRP7 HGNC:14342|Ensembl:ENSG00000163145|HPRD:16633|Vega:OTTHUMG00000097095 4 4p15.3 C1q and tumor necrosis factor related protein 7 protein-coding C1QTNF7 C1q and tumor necrosis factor related protein 7 O complement C1q tumor necrosis factor-related protein 7|complement-c1q tumor necrosis factor-related protein 7 20121230 -9606 114907 FBXO32 - Fbx32|MAFbx HGNC:16731|MIM:606604|Ensembl:ENSG00000156804|HPRD:05966|Vega:OTTHUMG00000164981 8 8q24.13 F-box protein 32 protein-coding FBXO32 F-box protein 32 O F-box only protein 32|atrogin 1|atrogin-1|muscle atrophy F-box protein 20121230 -9606 114908 TMEM123 PSEC0111 KCT3|PORIMIN|PORMIN HGNC:30138|MIM:606356|Ensembl:ENSG00000152558|Vega:OTTHUMG00000167326 11 11q22.1 transmembrane protein 123 protein-coding TMEM123 transmembrane protein 123 O KCT-3|keratinocytes associated transmembrane protein 3|keratinocytes-associated transmembrane protein 3|porimin|pro oncosis receptor inducing membrane injury|pro-oncosis receptor inducing membrane injury|serine/threonine-rich receptor 20121230 -9606 114915 EPB41L4A-AS1 - C5orf26|NCRNA00219|TIGA1 HGNC:30749|HPRD:18184 5 5q22.2 EPB41L4A antisense RNA 1 miscRNA EPB41L4A-AS1 EPB41L4A antisense RNA 1 O - 20121230 -9606 114926 C8orf40 - - HGNC:25166|Ensembl:ENSG00000176209|HPRD:14005|Vega:OTTHUMG00000157060 8 8p11.21 chromosome 8 open reading frame 40 protein-coding C8orf40 chromosome 8 open reading frame 40 O UPF0697 protein C8orf40 20121230 -9606 114928 GPRASP2 RP4-769N13.4 GASP2 HGNC:25169|Ensembl:ENSG00000158301|HPRD:06612|Vega:OTTHUMG00000022059 X Xq22.1 G protein-coupled receptor associated sorting protein 2 protein-coding GPRASP2 G protein-coupled receptor associated sorting protein 2 O G-protein coupled receptor-associated sorting protein 2 20121230 -9606 114932 MRFAP1L1 PP784 - HGNC:28796|Ensembl:ENSG00000178988|HPRD:15162|Vega:OTTHUMG00000125507 4 4p16.1 Morf4 family associated protein 1-like 1 protein-coding MRFAP1L1 Morf4 family associated protein 1-like 1 O MORF4 family-associated protein 1-like 1 20121230 -9606 114960 TSGA13 - - HGNC:12369|Ensembl:ENSG00000213265|HPRD:11650|Vega:OTTHUMG00000154999 7 7q32 testis specific, 13 protein-coding TSGA13 testis specific, 13 O testis-specific A13|testis-specific gene 13 protein 20121230 -9606 114971 PTPMT1 PNAS-129 DUSP23|MOSP|PLIP HGNC:26965|MIM:609538|Ensembl:ENSG00000110536|Vega:OTTHUMG00000166892 11 11p11.2 protein tyrosine phosphatase, mitochondrial 1 protein-coding PTPMT1 protein tyrosine phosphatase, mitochondrial 1 O NB4 apoptosis/differentiation related protein|PTEN-like phosphatase|phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1|phosphoinositide lipid phosphatase|protein-tyrosine phosphatase mitochondrial 1 20121230 -9606 114984 FLYWCH2 - - HGNC:25178|Ensembl:ENSG00000162076|HPRD:14007|Vega:OTTHUMG00000128962 16 16p13.3 FLYWCH family member 2 protein-coding FLYWCH2 FLYWCH family member 2 O - 20121230 -9606 114987 WDR31 - - HGNC:21421|Ensembl:ENSG00000148225|HPRD:18299|Vega:OTTHUMG00000020525 9 9q32 WD repeat domain 31 protein-coding WDR31 WD repeat domain 31 O WD repeat-containing protein 31 20121230 -9606 114990 VASN UNQ314/PRO357/PRO1282 SLITL2 HGNC:18517|MIM:608843|Ensembl:ENSG00000168140|HPRD:10587|Vega:OTTHUMG00000129469 16 16p13.3 vasorin protein-coding VASN vasorin O protein slit-like 2|slit-like 2 20121230 -9606 114991 ZNF618 RP11-56P10.2 FP13169|NEDD10 HGNC:29416|Ensembl:ENSG00000157657|HPRD:18719|Vega:OTTHUMG00000020532 9 9q32 zinc finger protein 618 protein-coding ZNF618 zinc finger protein 618 O neural precursor cell expressed, developmentally down-regulated 10 20121230 -9606 115004 MB21D1 RP11-398K22.2 C6orf150 HGNC:21367|MIM:613973|Ensembl:ENSG00000164430|HPRD:12857|Vega:OTTHUMG00000015034 6 6q13 Mab-21 domain containing 1 protein-coding MB21D1 Mab-21 domain containing 1 O mab-21 domain-containing protein 1|protein MB21D1 20121230 -9606 115019 SLC26A9 - - HGNC:14469|MIM:608481|Ensembl:ENSG00000174502|HPRD:12242|Vega:OTTHUMG00000036001 1 1q32.1 solute carrier family 26, member 9 protein-coding SLC26A9 solute carrier family 26, member 9 O anion transporter/exchanger protein 9|anion transporter/exchanger-9|solute carrier family 26 member 9 20121230 -9606 115024 NT5C3L - - HGNC:28300|Ensembl:ENSG00000141698|HPRD:14475|Vega:OTTHUMG00000133499 17 17q21.2 5'-nucleotidase, cytosolic III-like protein-coding NT5C3L 5'-nucleotidase, cytosolic III-like O cN-III-like protein|cytosolic 5'-nucleotidase III-like protein 20121230 -9606 115098 CCDC124 - - HGNC:25171|Ensembl:ENSG00000007080|HPRD:14008 19 19p13.11 coiled-coil domain containing 124 protein-coding CCDC124 coiled-coil domain containing 124 O coiled-coil domain-containing protein 124 20121230 -9606 115106 HAUS1 - CCDC5|HEI-C|HEIC|HsT1461 HGNC:25174|MIM:608775|Ensembl:ENSG00000152240|HPRD:16385|Vega:OTTHUMG00000132638 18 18q21.1 HAUS augmin-like complex, subunit 1 protein-coding HAUS1 HAUS augmin-like complex, subunit 1 O HAUS augmin-like complex subunit 1|coiled-coil domain containing 5 (spindle associated)|coiled-coil domain-containing protein 5|enhancer of invasion-cluster 20121230 -9606 115110 LOC115110 - - - 1 1p36.32 uncharacterized LOC115110 miscRNA - - - - 20121230 -9606 115111 SLC26A7 - SUT2 HGNC:14467|MIM:608479|Ensembl:ENSG00000147606|HPRD:10533|Vega:OTTHUMG00000164062 8 8q23 solute carrier family 26, member 7 protein-coding SLC26A7 solute carrier family 26, member 7 O anion exchange transporter|sulfate anion transporter 20121230 -9606 115123 MARCH3 - MARCH-III|RNF173 HGNC:28728|MIM:613333|Ensembl:ENSG00000173926|HPRD:14362|Vega:OTTHUMG00000128968 5 5q23.2 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase protein-coding MARCH3 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MARCH3|RING finger protein 173|membrane-associated RING finger protein 3|membrane-associated RING-CH protein III 20121230 -9606 115196 ZNF554 - - HGNC:26629|Ensembl:ENSG00000172006|HPRD:15837|Vega:OTTHUMG00000180493 19 19p13.3 zinc finger protein 554 protein-coding ZNF554 zinc finger protein 554 O - 20121230 -9606 115201 ATG4A RP5-889N15.2 APG4A|AUTL2 HGNC:16489|MIM:300663|Ensembl:ENSG00000101844|HPRD:06455|Vega:OTTHUMG00000022176 X Xq22.1-q22.3 autophagy related 4A, cysteine peptidase protein-coding ATG4A autophagy related 4A, cysteine peptidase O APG4 autophagy 4 homolog A|ATG4 autophagy related 4 homolog A|AUT-like 2 cysteine endopeptidase|AUT-like 2, cysteine endopeptidase|autophagin 2|autophagin-2|autophagy-related cysteine endopeptidase 2|autophagy-related protein 4 homolog A|cysteine protease ATG4A|hAPG4A 20121230 -9606 115207 KCTD12 - C13orf2|PFET1|PFETIN HGNC:14678|MIM:610521|Ensembl:ENSG00000178695|HPRD:11060|Vega:OTTHUMG00000017096 13 13q22.3 potassium channel tetramerisation domain containing 12 protein-coding KCTD12 potassium channel tetramerisation domain containing 12 O BTB/POZ domain-containing protein KCTD12|predominantly fetal expressed T1 domain 20121230 -9606 115209 OMA1 - 2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1 HGNC:29661|Ensembl:ENSG00000162600|HPRD:14879|Vega:OTTHUMG00000010068 1 1p32.2-p32.1 OMA1 zinc metallopeptidase homolog (S. cerevisiae) protein-coding OMA1 OMA1 zinc metallopeptidase homolog (S. cerevisiae) O OMA1 homolog, zinc metallopeptidase|metalloendopeptidase OMA1, mitochondrial|metalloprotease related protein 1|metalloprotease-related protein 1|overlapping activity with M-AAA protease|overlapping with the m-AAA protease 1 homolog|zinc metallopeptidase OMA1 20121230 -9606 115265 DDIT4L - REDD2|Rtp801L HGNC:30555|MIM:607730|Ensembl:ENSG00000145358|HPRD:09663|Vega:OTTHUMG00000161019 4 4q24 DNA-damage-inducible transcript 4-like protein-coding DDIT4L DNA-damage-inducible transcript 4-like O DNA damage-inducible transcript 4-like protein|HIF-1 responsive protein RTP801-like|REDD-2|homolog of mouse SMHS1|protein regulated in development and DNA damage response 2|regulated in development and DNA damage response 2 20121230 -9606 115273 RAB42 - RP4-669K10.6 HGNC:28702|Ensembl:ENSG00000188060|HPRD:14644|Vega:OTTHUMG00000003656 1 1p35.3 RAB42, member RAS oncogene family protein-coding RAB42 RAB42, member RAS oncogene family O RAB42, member RAS homolog family|putative Ras-related protein Rab-42 20121230 -9606 115286 SLC25A26 - SAMC HGNC:20661|MIM:611037|Ensembl:ENSG00000144741|HPRD:15357|Vega:OTTHUMG00000149917 3 3p14.1 solute carrier family 25 (S-adenosylmethionine carrier), member 26 protein-coding SLC25A26 solute carrier family 25 (S-adenosylmethionine carrier), member 26 O S-adenosylmethionine mitochondrial carrier protein|mitochondrial S-adenosylmethionine transporter|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 26|solute carrier family 25, member 26 20121230 -9606 115290 FBXO17 - FBG4|FBX26|FBXO26|Fbx17 HGNC:18754|MIM:609094|Ensembl:ENSG00000104835|HPRD:16436 19 19q13.2 F-box protein 17 protein-coding FBXO17 F-box protein 17 O F-box only protein 17|F-box only protein 26|F-box protein FBG4 20121230 -9606 115294 PCMTD1 - - HGNC:30483|Ensembl:ENSG00000168300|HPRD:08313|Vega:OTTHUMG00000164246 8 8q11.23 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 O protein-L-isoaspartate O-methyltransferase domain-containing protein 1 20121230 -9606 115330 GPR146 - PGR8 HGNC:21718|Ensembl:ENSG00000164849|HPRD:17064 7 7p22.3 G protein-coupled receptor 146 protein-coding GPR146 G protein-coupled receptor 146 O G protein-coupled receptor PGR8|G-protein coupled receptor PGR8|probable G-protein coupled receptor 146 20121230 -9606 115350 FCRL1 - CD307a|FCRH1|IFGP1|IRTA5 HGNC:18509|MIM:606508|Ensembl:ENSG00000163534|HPRD:07350|Vega:OTTHUMG00000019398 1 1q21-q22 Fc receptor-like 1 protein-coding FCRL1 Fc receptor-like 1 O Fc receptor-like protein 1|IFGP family protein 1|fc receptor homolog 1|fcR-like protein 1|hIFGP1|immune receptor translocation-associated protein 5|immunoglobulin superfamily Fc receptor, gp42 20121230 -9606 115352 FCRL3 - CD307c|FCRH3|IFGP3|IRTA3|SPAP2 HGNC:18506|MIM:606510|Ensembl:ENSG00000160856|HPRD:07352|Vega:OTTHUMG00000019400 1 1q21-q22 Fc receptor-like 3 protein-coding FCRL3 Fc receptor-like 3 O Fc receptor homolog 3|Fc receptor-like protein 3|IFGP family protein 3|SH2 domain-containing phosphatase anchor protein 2|fcR-like protein 3|hIFGP3|immune receptor translocation-associated protein 3|immunoglobulin superfamily receptor translocation associated protein 3 20121230 -9606 115353 LRRC42 - dJ167A19.4 HGNC:28792|Ensembl:ENSG00000116212|HPRD:14711|Vega:OTTHUMG00000008436 1 1p33-p32.1 leucine rich repeat containing 42 protein-coding LRRC42 leucine rich repeat containing 42 O leucine-rich repeat-containing protein 42 20121230 -9606 115361 GBP4 - Mpa2 HGNC:20480|MIM:612466|Ensembl:ENSG00000162654|HPRD:13570|Vega:OTTHUMG00000010663 1 1p22.2 guanylate binding protein 4 protein-coding GBP4 guanylate binding protein 4 O GBP-4|GTP-binding protein 4|guanine nucleotide-binding protein 4|guanylate-binding protein 4 20121230 -9606 115362 GBP5 UNQ2427/PRO4987 GBP-5 HGNC:19895|MIM:611467|Ensembl:ENSG00000154451|HPRD:13571|Vega:OTTHUMG00000010006 1 1p22.2 guanylate binding protein 5 protein-coding GBP5 guanylate binding protein 5 O GBP-TA antigen|GTP-binding protein 5|guanine nucleotide-binding protein 5|guanylate-binding protein 5 20121230 -9606 115399 LRRC56 - - HGNC:25430|Ensembl:ENSG00000161328|HPRD:13227|Vega:OTTHUMG00000132003 11 11p15.5 leucine rich repeat containing 56 protein-coding LRRC56 leucine rich repeat containing 56 O leucine-rich repeat-containing protein 56 20121230 -9606 115416 MALSU1 - C7orf30 HGNC:21721|MIM:614624|Ensembl:ENSG00000156928|HPRD:12918|Vega:OTTHUMG00000128443 7 7p15.3 mitochondrial assembly of ribosomal large subunit 1 protein-coding MALSU1 mitochondrial assembly of ribosomal large subunit 1 O mitochondrial assembly of ribosomal large subunit protein 1 20121230 -9606 115426 UHRF2 RP11-472F14.2 NIRF|RNF107|URF2 HGNC:12557|Ensembl:ENSG00000147854|HPRD:18257|Vega:OTTHUMG00000019521 9 9p24.1 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase protein-coding UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase UHRF2|Np95-like ring finger protein|RING finger protein 107|np95/ICBP90-like RING finger protein|nuclear protein 97|nuclear zinc finger protein NP97|ubiquitin-like PHD and RING finger domain-containing protein 2|ubiquitin-like, containing PHD and RING finger domains, 2|ubiquitin-like-containing PHD and RING finger domains protein 2 20121230 -9606 115509 ZNF689 - TIPUH1 HGNC:25173|Ensembl:ENSG00000156853|HPRD:14009|Vega:OTTHUMG00000132415 16 16p11.2 zinc finger protein 689 protein-coding ZNF689 zinc finger protein 689 O transcription-involved protein upregulated in HCC 1 20121230 -9606 115548 FCHO2 - - HGNC:25180|MIM:613438|Ensembl:ENSG00000157107|HPRD:13319|Vega:OTTHUMG00000162413 5 5q13.2 FCH domain only 2 protein-coding FCHO2 FCH domain only 2 O FCH domain only protein 2 20121230 -9606 115557 ARHGEF25 - GEFT|p63RhoGEF HGNC:30275|MIM:610215|Ensembl:ENSG00000240771|HPRD:13573|Vega:OTTHUMG00000152516 12 12q13.3 Rho guanine nucleotide exchange factor (GEF) 25 protein-coding ARHGEF25 Rho guanine nucleotide exchange factor (GEF) 25 O RAC/CDC42 exchange factor|RhoA/RAC/CDC42 exchange factor|guanine nucleotide exchange factor GEFT|rac/Cdc42/Rho exchange factor GEFT|rho guanine nucleotide exchange factor 25|rhoA/Rac/Cdc42 guanine nucleotide exchange factor GEFT 20121230 -9606 115560 ZNF501 - ZNF|ZNF52 HGNC:23717|Ensembl:ENSG00000186446|HPRD:15809|Vega:OTTHUMG00000133048 3 3p21.31 zinc finger protein 501 protein-coding ZNF501 zinc finger protein 501 O zinc finger protein 52 20121230 -9606 115572 FAM46B - RP11-344H11.8 HGNC:28273|Ensembl:ENSG00000158246|HPRD:16882|Vega:OTTHUMG00000004278 1 1p36.11 family with sequence similarity 46, member B protein-coding FAM46B family with sequence similarity 46, member B O protein FAM46B 20121230 -9606 115584 SLC5A11 - KST1|RKST1|SGLT6|SMIT2 HGNC:23091|MIM:610238|Ensembl:ENSG00000158865|Vega:OTTHUMG00000097003 16 16p12.1 solute carrier family 5 (sodium/glucose cotransporter), member 11 protein-coding SLC5A11 solute carrier family 5 (sodium/glucose cotransporter), member 11 O Na(+)/myo-inositol cotransporter 2|homolog of rabbit KST1|putative sodium-coupled cotransporter RKST1|sodium-dependent glucose cotransporter|sodium/glucose cotransporter KST1|sodium/myo-inositol cotransporter 2|sodium/myo-inositol transporter 2 20121230 -9606 115650 TNFRSF13C CTA-250D10.7 BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin HGNC:17755|MIM:606269|Ensembl:ENSG00000159958|HPRD:05883|Vega:OTTHUMG00000151271 22 22q13.1-q13.31 tumor necrosis factor receptor superfamily, member 13C protein-coding TNFRSF13C tumor necrosis factor receptor superfamily, member 13C O B cell-activating factor receptor|B-cell-activating factor receptor|BAFF receptor|BLyS receptor 3|tumor necrosis factor receptor superfamily member 13C 20121230 -9606 115653 KIR3DL3 XXbac-BCX360G3.1 CD158Z|KIR3DL7|KIR44|KIRC1 HGNC:16312|MIM:610095|Ensembl:ENSG00000242019|HPRD:17236|Vega:OTTHUMG00000065884 19 19q13.42 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3 protein-coding KIR3DL3 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3 O CD158 antigen-like family member Z|killer cell Ig-like receptor KIR3DL7|killer cell immunoglobulin-like receptor 3DL3|killer cell inhibitory receptor 1 20121230 -9606 115677 NOSTRIN - DaIP2 HGNC:20203|MIM:607496|Ensembl:ENSG00000163072|HPRD:06324|Vega:OTTHUMG00000153990 2 2q31.1 nitric oxide synthase trafficker protein-coding NOSTRIN nitric oxide synthase trafficker O BM247 homolog|ENOS traffic inducer|eNOS-trafficking inducer|endothelial nitric oxide synthase traffic inducer|nitric oxide synthase traffic inducer|nitric oxide synthase trafficking|nostrin|ortholog of mouse disabled 2 interacting proein 2 20121230 -9606 115701 ALPK2 - HAK HGNC:20565|Ensembl:ENSG00000198796|HPRD:11019|Vega:OTTHUMG00000132755 18 18q21.31 alpha-kinase 2 protein-coding ALPK2 alpha-kinase 2 O alpha-protein kinase 2|heart alpha-kinase|heart alpha-protein kinase 20121230 -9606 115703 ARHGAP33 - NOMA-GAP|SNX26|TCGAP HGNC:23085|MIM:614902|Ensembl:ENSG00000004777|HPRD:15415|Vega:OTTHUMG00000182071 19 19q13.12 Rho GTPase activating protein 33 protein-coding ARHGAP33 Rho GTPase activating protein 33 O neurite outgrowth multiadaptor RhoGAP protein|rho GTPase-activating protein 33|rho-type GTPase-activating protein 33|sorting nexin 26|sorting nexin-26|tc10/CDC42 GTPase-activating protein 20121230 -9606 115704 EVI5L - - HGNC:30464|Ensembl:ENSG00000142459|HPRD:10044 19 19p13.2 ecotropic viral integration site 5-like protein-coding EVI5L ecotropic viral integration site 5-like O EVI5-like protein|ecotropic viral integration site 5-like protein 20121230 -9606 115708 TRMT61A hCG_25505 C14orf172|GCD14|Gcd14p|TRM61|hTRM61 HGNC:23790|Ensembl:ENSG00000166166|HPRD:08810|Vega:OTTHUMG00000171762 14 14q32 tRNA methyltransferase 61 homolog A (S. cerevisiae) protein-coding TRMT61A tRNA methyltransferase 61 homolog A (S. cerevisiae) O tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A|tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61|tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A|tRNA(m1A58)-methyltransferase subunit TRM61|tRNA(m1A58)-methyltransferase subunit TRMT61A|tRNA(m1A58)MTase subunit TRM61|tRNA(m1A58)MTase subunit TRMT61A 20121230 -9606 115727 RASGRP4 - - HGNC:18958|MIM:607320|Ensembl:ENSG00000171777|HPRD:09540|Vega:OTTHUMG00000182327 19 19q13.1 RAS guanyl releasing protein 4 protein-coding RASGRP4 RAS guanyl releasing protein 4 O RAS guanyl-releasing protein 4|guanyl nucleotide releasing protein 4 20121230 -9606 115749 C12orf56 - - HGNC:26967|Ensembl:ENSG00000185306|Vega:OTTHUMG00000168782 12 12q14.2 chromosome 12 open reading frame 56 protein-coding C12orf56 chromosome 12 open reading frame 56 O uncharacterized protein C12orf56 20121230 -9606 115752 DIS3L - DIS3L1 HGNC:28698|MIM:614183|Ensembl:ENSG00000166938|HPRD:11355|Vega:OTTHUMG00000133181 15 15q22.31 DIS3 mitotic control homolog (S. cerevisiae)-like protein-coding DIS3L DIS3 mitotic control homolog (S. cerevisiae)-like O DIS3-like exonuclease 1 20121230 -9606 115761 ARL11 RP11-432M24.1 ARLTS1 HGNC:24046|MIM:609351|Ensembl:ENSG00000152213|HPRD:12484|Vega:OTTHUMG00000016919 13 13q14.2 ADP-ribosylation factor-like 11 protein-coding ARL11 ADP-ribosylation factor-like 11 O ADP-ribosylation factor-like protein 11|ADP-ribosylation factor-like tumor suppressor protein 1 20121230 -9606 115795 FANCD2OS HSD19 C3orf24 HGNC:28623|Ensembl:ENSG00000163705|HPRD:17552|Vega:OTTHUMG00000128669 3 3p25.3 FANCD2 opposite strand protein-coding FANCD2OS FANCD2 opposite strand O uncharacterized protein C3orf24 20121230 -9606 115811 IQCD - 4933433C09Rik HGNC:25168|Ensembl:ENSG00000166578|HPRD:13744|Vega:OTTHUMG00000169659 12 12q24.13 IQ motif containing D protein-coding IQCD IQ motif containing D O IQ domain-containing protein D 20121230 -9606 115817 DHRS1 - SDR19C1 HGNC:16445|MIM:610410|Ensembl:ENSG00000157379|HPRD:09914|Vega:OTTHUMG00000029333 14 14q12 dehydrogenase/reductase (SDR family) member 1 protein-coding DHRS1 dehydrogenase/reductase (SDR family) member 1 O dehydrogenase/reductase SDR family member 1|short chain dehydrogenase/reductase family 19C, member 1 20121230 -9606 115825 WDFY2 - PROF|RP11-147H23.1|WDF2|ZFYVE22 HGNC:20482|MIM:610418|Ensembl:ENSG00000139668|HPRD:18294|Vega:OTTHUMG00000017407 13 13q14.3 WD repeat and FYVE domain containing 2 protein-coding WDFY2 WD repeat and FYVE domain containing 2 O WD repeat and FYVE domain-containing protein 2|WD40 and FYVE domain containing 2|WD40- and FYVE domain-containing protein 2|propeller-FYVE protein|zinc finger FYVE domain-containing protein 22 20121230 -9606 115827 RAB3C - - HGNC:30269|MIM:612829|Ensembl:ENSG00000152932|HPRD:06704|Vega:OTTHUMG00000097053 5 5q13 RAB3C, member RAS oncogene family protein-coding RAB3C RAB3C, member RAS oncogene family O ras-related protein Rab-3C 20121230 -9606 115861 NXNL1 - RDCVF|TXNL6 HGNC:25179|MIM:608791|Ensembl:ENSG00000171773|HPRD:12300 19 19p13.11 nucleoredoxin-like 1 protein-coding NXNL1 nucleoredoxin-like 1 O nucleoredoxin-like protein 1|rod-derived cone viability factor|thioredoxin-like 6|thioredoxin-like protein 6 20121230 -9606 115908 CTHRC1 UNQ762/PRO1550 - HGNC:18831|MIM:610635|Ensembl:ENSG00000164932|HPRD:16772|Vega:OTTHUMG00000164887 8 8q22.3 collagen triple helix repeat containing 1 protein-coding CTHRC1 collagen triple helix repeat containing 1 O collagen triple helix repeat-containing protein 1 20121230 -9606 115939 TSR3 - C16orf42 HGNC:14175|Ensembl:ENSG00000007520|HPRD:14496|Vega:OTTHUMG00000047834 16 16p13.3 TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) protein-coding TSR3 TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) O probable ribosome biogenesis protein C16orf42|ribosome biogenesis protein TSR3 homolog 20121230 -9606 115948 CCDC151 - - HGNC:28303|Ensembl:ENSG00000198003|HPRD:10076|Vega:OTTHUMG00000182028 19 19p13.2 coiled-coil domain containing 151 protein-coding CCDC151 coiled-coil domain containing 151 O coiled-coil domain-containing protein 151 20121230 -9606 115950 ZNF653 - E430039K05Rik|ZIP67 HGNC:25196|MIM:611371|Ensembl:ENSG00000161914|HPRD:15889|Vega:OTTHUMG00000182032 19 19p13.2 zinc finger protein 653 protein-coding ZNF653 zinc finger protein 653 O 67 kDa zinc finger protein|zinc finger protein Zip67 20121230 -9606 115992 RNF166 - - HGNC:28856|Ensembl:ENSG00000158717|HPRD:15260|Vega:OTTHUMG00000137863 16 16q24.3 ring finger protein 166 protein-coding RNF166 ring finger protein 166 O RING finger protein 166 20121230 -9606 116028 RMI2 - BLAP18|C16orf75 HGNC:28349|MIM:612426|Ensembl:ENSG00000175643|HPRD:14497|Vega:OTTHUMG00000129793 16 16p13.13 RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae) protein-coding RMI2 RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae) O BLM-associated protein of 18 kDa|RecQ-mediated genome instability 2, S. cerevisiae, homolog of|hRMI2|recQ-mediated genome instability protein 2 20121230 -9606 116039 OSR2 - - HGNC:15830|MIM:611297|Ensembl:ENSG00000164920|HPRD:17806|Vega:OTTHUMG00000164640 8 8q22.2 odd-skipped related 2 (Drosophila) protein-coding OSR2 odd-skipped related 2 (Drosophila) O protein odd-skipped-related 2 20121230 -9606 116064 LRRC58 - - HGNC:26968|Ensembl:ENSG00000163428|Vega:OTTHUMG00000159407 3 3q13.33 leucine rich repeat containing 58 protein-coding LRRC58 leucine rich repeat containing 58 O leucine-rich repeat-containing protein 58 20121230 -9606 116068 LYSMD3 - - HGNC:26969|Ensembl:ENSG00000176018|Ensembl:ENSG00000259141|Vega:OTTHUMG00000162667 5 5q14.3 LysM, putative peptidoglycan-binding, domain containing 3 protein-coding LYSMD3 LysM, putative peptidoglycan-binding, domain containing 3 O lysM and putative peptidoglycan-binding domain-containing protein 3 20121230 -9606 116071 BATF2 - SARI HGNC:25163|MIM:614983|Ensembl:ENSG00000168062|HPRD:14470|Vega:OTTHUMG00000165633 11 11q13.1 basic leucine zipper transcription factor, ATF-like 2 protein-coding BATF2 basic leucine zipper transcription factor, ATF-like 2 O B-ATF-2|basic leucine zipper transcriptional factor ATF-like 2|suppressor of AP-1 regulated by IFN 20121230 -9606 116085 SLC22A12 UNQ6453/PRO34004 OAT4L|RST|URAT1 HGNC:17989|MIM:607096|Ensembl:ENSG00000197891|HPRD:06160|Vega:OTTHUMG00000045213 11 11q13.1 solute carrier family 22 (organic anion/urate transporter), member 12 protein-coding SLC22A12 solute carrier family 22 (organic anion/urate transporter), member 12 O organic anion transporter 4-like protein|renal-specific transporter|solute carrier family 22 (organic anion/cation transporter), member 12|solute carrier family 22 member 12|urate anion exchanger 1|urate transporter 1 20121230 -9606 116092 DNTTIP1 RP3-447F3.5 C20orf167|Tdif1|dJ447F3.4 HGNC:16160|MIM:611388|Ensembl:ENSG00000101457|HPRD:16831|Vega:OTTHUMG00000032610 20 20q13.12 deoxynucleotidyltransferase, terminal, interacting protein 1 protein-coding DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1 O TdT binding protein|deoxynucleotidyltransferase terminal-interacting protein 1|tdT-interacting factor 1|terminal deoxynucleotidyltransferase-interacting factor 1 20121230 -9606 116093 DIRC1 - - HGNC:15760|MIM:606423|Ensembl:ENSG00000174325|HPRD:16219|Vega:OTTHUMG00000132646 2 2q33 disrupted in renal carcinoma 1 protein-coding DIRC1 disrupted in renal carcinoma 1 O disrupted in renal cancer protein|disrupted in renal carcinoma protein 1 20121230 -9606 116113 FOXP4 RP11-328M4.1 hFKHLA HGNC:20842|MIM:608924|Ensembl:ENSG00000137166|HPRD:10600|Vega:OTTHUMG00000014679 6 6p21.1 forkhead box P4 protein-coding FOXP4 forkhead box P4 O fork head-related protein like A|fork head-related protein-like A|forkhead box protein P4|winged-helix repressor FOXP4 20121230 -9606 116115 ZNF526 - - HGNC:29415|MIM:614387|Ensembl:ENSG00000167625|HPRD:15818 19 19q13.2 zinc finger protein 526 protein-coding ZNF526 zinc finger protein 526 O - 20121230 -9606 116123 FMO9P RP11-45J16.2 - HGNC:32210|HPRD:14011 1 1q24.1 flavin containing monooxygenase 9 pseudogene pseudo FMO9P flavin containing monooxygenase 9 pseudogene O - 20121230 -9606 116135 LRRC3B UNQ195/PRO221 LRP15 HGNC:28105|Ensembl:ENSG00000179796|HPRD:14318|Vega:OTTHUMG00000130572 3 3p24 leucine rich repeat containing 3B protein-coding LRRC3B leucine rich repeat containing 3B O leucine-rich repeat protein LRP15|leucine-rich repeat-containing protein 3B 20121230 -9606 116138 KLHDC3 - PEAS|RP1-20C7.3|dJ20C7.3 HGNC:20704|MIM:611248|Ensembl:ENSG00000124702|HPRD:13922|Vega:OTTHUMG00000014714 6 6p21.1 kelch domain containing 3 protein-coding KLHDC3 kelch domain containing 3 O kelch domain-containing protein 3|testis intracellular mediator protein 20121230 -9606 116143 WDR92 - - HGNC:25176|MIM:610729|Ensembl:ENSG00000243667|HPRD:14012|Vega:OTTHUMG00000152561 2 2p14 WD repeat domain 92 protein-coding WDR92 WD repeat domain 92 O WD repeat-containing protein 92|WD repeat-containing protein Monad|monad 20121230 -9606 116149 RPL12P4 - RPL12_23_1714|dJ800C24.1 HGNC:16587 20 20q13.2 ribosomal protein L12 pseudogene 4 pseudo RPL12P4 ribosomal protein L12 pseudogene 4 O - 20121230 -9606 116150 NUS1 - C6orf68|MGC:7199|NgBR|TANGO14 HGNC:21042|MIM:610463|Ensembl:ENSG00000153989|HPRD:12894|Vega:OTTHUMG00000015458 6 6q22.1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) protein-coding NUS1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) O nogo-B receptor|transport and golgi organization 14 homolog 20121230 -9606 116151 FAM210B PSEC0265 5A3|C20orf108|dJ1167H4.1 HGNC:16102|Ensembl:ENSG00000124098|HPRD:12737|Vega:OTTHUMG00000032793 20 20q13.2 family with sequence similarity 210, member B protein-coding FAM210B family with sequence similarity 210, member B O protein FAM210B|transmembrane protein C20orf108 20121230 -9606 116154 PHACTR3 RP5-899C14.1 C20orf101|H17739|SCAPIN1|SCAPININ HGNC:15833|MIM:608725|Ensembl:ENSG00000087495|HPRD:10571|Vega:OTTHUMG00000032869 20 20q13.32-q13.33 phosphatase and actin regulator 3 protein-coding PHACTR3 phosphatase and actin regulator 3 O scaffold-associated PP1-inhibiting protein 20121230 -9606 116159 CYYR1 - C21orf95 HGNC:16274|Ensembl:ENSG00000166265|Vega:OTTHUMG00000078689 21 21q21.2 cysteine/tyrosine-rich 1 protein-coding CYYR1 cysteine/tyrosine-rich 1 O cysteine and tyrosine-rich 1|cysteine and tyrosine-rich protein 1|proline-rich domain-containing protein 20121230 -9606 116166 SORDL - - - 15 15q21.1 sorbitol dehydrogenase-like unknown - - - - 20100404 -9606 116173 CMTM5 - CKLFSF5 HGNC:19176|MIM:607888|Ensembl:ENSG00000166091|HPRD:06986|Vega:OTTHUMG00000028751 14 14q11.2 CKLF-like MARVEL transmembrane domain containing 5 protein-coding CMTM5 CKLF-like MARVEL transmembrane domain containing 5 O CKLF-like MARVEL transmembrane domain-containing protein 5|chemokine-like factor super family 5|chemokine-like factor superfamily member 5 20121230 -9606 116179 TGM7 - TGMZ HGNC:30790|MIM:606776|Ensembl:ENSG00000159495|HPRD:09485|Vega:OTTHUMG00000176547 15 15q15.2 transglutaminase 7 protein-coding TGM7 transglutaminase 7 O TG(Z)|TGZ|TGase Z|TGase-7|protein-glutamine gamma-glutamyltransferase Z|transglutaminase Z|transglutaminase-7 20121230 -9606 116211 TM4SF19 OCTM4 - HGNC:25167|Ensembl:ENSG00000145107|HPRD:14013|Vega:OTTHUMG00000155675 3 3q29 transmembrane 4 L six family member 19 protein-coding TM4SF19 transmembrane 4 L six family member 19 O osteoclast maturation-associated gene 4 protein|tetraspan membrane protein OCTM4|transmembrane 4 L6 family member 19 20121230 -9606 116224 FAM122A - C9orf42 HGNC:23490|Ensembl:ENSG00000187866|HPRD:10074|Vega:OTTHUMG00000019971 9 9q21.11 family with sequence similarity 122A protein-coding FAM122A family with sequence similarity 122A O protein FAM122A 20121230 -9606 116225 ZMYND19 - MIZIP|RP11-48C7.4 HGNC:21146|MIM:611424|Ensembl:ENSG00000165724|HPRD:15743|Vega:OTTHUMG00000020992 9 9q34.3 zinc finger, MYND-type containing 19 protein-coding ZMYND19 zinc finger, MYND-type containing 19 O MCH-R1-interacting zinc finger protein|melanin-concentrating hormone receptor 1 interacting zinc-finger protein|melanin-concentrating hormone receptor 1-interacting zinc finger protein|zinc finger MYND domain-containing protein 19|zinc finger, MYND domain containing 19 20121230 -9606 116228 COX20 - FAM36A HGNC:26970|MIM:614698|Ensembl:ENSG00000203667|HPRD:13307|Vega:OTTHUMG00000040401 1 1q44 COX20 Cox2 chaperone homolog (S. cerevisiae) protein-coding COX20 COX20 Cox2 chaperone homolog (S. cerevisiae) O cytochrome c oxidase protein 20 homolog|family with sequence similarity 36, member A|protein FAM36A 20121230 -9606 116236 ABHD15 UNQ6510/PRO21435 - HGNC:26971|Ensembl:ENSG00000168792|HPRD:14014|Vega:OTTHUMG00000179721 17 17q11.2 abhydrolase domain containing 15 protein-coding ABHD15 abhydrolase domain containing 15 O abhydrolase domain-containing protein 15 20121230 -9606 116238 TLCD1 - - HGNC:25177|Ensembl:ENSG00000160606|HPRD:14015|Vega:OTTHUMG00000132683 17 17q11.2 TLC domain containing 1 protein-coding TLCD1 TLC domain containing 1 O TLC domain-containing protein 1 20121230 -9606 116254 GINM1 RP1-12G14.8 C6orf72|dJ12G14.2 HGNC:21074|Ensembl:ENSG00000055211|HPRD:12896|Vega:OTTHUMG00000015789 6 6q25.1 glycoprotein integral membrane 1 protein-coding GINM1 glycoprotein integral membrane 1 O glycoprotein integral membrane protein 1 20121230 -9606 116255 MOGAT1 - DGAT2L|DGAT2L1|MGAT1 HGNC:18210|MIM:610268|Ensembl:ENSG00000124003|HPRD:14729|Vega:OTTHUMG00000153394 2 2q36.1 monoacylglycerol O-acyltransferase 1 protein-coding MOGAT1 monoacylglycerol O-acyltransferase 1 O 2-acylglycerol O-acyltransferase 1|acyl-CoA:monoacylglycerol acyltransferase 1|diacylglycerol O-acyltransferase 2 like 1|diacylglycerol O-acyltransferase candidate 2|diacylglycerol acyltransferase 2-like protein 1|hDC2 20121230 -9606 116285 ACSM1 - BUCS1|MACS1 HGNC:18049|MIM:614357|Ensembl:ENSG00000166743|HPRD:12551|Vega:OTTHUMG00000131550 16 16p12.3 acyl-CoA synthetase medium-chain family member 1 protein-coding ACSM1 acyl-CoA synthetase medium-chain family member 1 O Butyrate CoA ligase|acyl-coenzyme A synthetase ACSM1, mitochondrial|butyrate--CoA ligase 1|butyryl Coenzyme A synthetase 1|butyryl-coenzyme A synthetase 1|lipoate-activating enzyme|medium-chain acyl-CoA synthetase|middle-chain acyl-CoA synthetase 1 20121230 -9606 116328 C8orf34 - VEST-1|VEST1 HGNC:30905|Ensembl:ENSG00000165084|HPRD:18281|Vega:OTTHUMG00000164438 8 8q13 chromosome 8 open reading frame 34 protein-coding C8orf34 chromosome 8 open reading frame 34 O protein VEST-1|uncharacterized protein C8orf34|vestibule 1|vestibule-1 protein 20121230 -9606 116337 PANX3 - PX3 HGNC:20573|MIM:608422|Ensembl:ENSG00000154143|HPRD:16334|Vega:OTTHUMG00000165925 11 11q24.2 pannexin 3 protein-coding PANX3 pannexin 3 O gap junction protein pannexin 3|pannexin-3 20121230 -9606 116349 C5orf55 - - HGNC:25175|Ensembl:ENSG00000221990|Vega:OTTHUMG00000162235 5 5p15.33 chromosome 5 open reading frame 55 protein-coding C5orf55 chromosome 5 open reading frame 55 O uncharacterized protein C5orf55 20121230 -9606 116362 RBP7 RP11-496H15.1 CRBP4|CRBPIV HGNC:30316|MIM:608604|Ensembl:ENSG00000162444|HPRD:16355|Vega:OTTHUMG00000001798 1 1p36.22 retinol binding protein 7, cellular protein-coding RBP7 retinol binding protein 7, cellular O CRABP-IV|CRABP4|cellular retinoic acid-binding protein 4|cellular retinoic acid-binding protein IV|putative cellular retinol-binding protein CRBP IV|retinoid binding protein 7|retinoid-binding protein 7 20121230 -9606 116369 SLC26A8 RP11-482O9.1 TAT1 HGNC:14468|MIM:608480|Ensembl:ENSG00000112053|HPRD:12241|Vega:OTTHUMG00000014586 6 6p21 solute carrier family 26, member 8 protein-coding SLC26A8 solute carrier family 26, member 8 O anion exchange transporter|anion transporter/exchanger-8|testis anion transporter 1 20121230 -9606 116372 LYPD1 PSEC0181 LYPDC1|PHTS HGNC:28431|MIM:610450|Ensembl:ENSG00000150551|HPRD:14333|Vega:OTTHUMG00000153609 2 2q21.2 LY6/PLAUR domain containing 1 protein-coding LYPD1 LY6/PLAUR domain containing 1 O ly6/PLAUR domain-containing protein 1|putative HeLa tumor suppressor 20121230 -9606 116379 IL22RA2 UNQ5793/PRO19598/PRO19822 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22RA2 HGNC:14901|MIM:606648|Ensembl:ENSG00000164485|HPRD:05973|Vega:OTTHUMG00000015655 6 6q25.1 interleukin 22 receptor, alpha 2 protein-coding IL22RA2 interleukin 22 receptor, alpha 2 O IL-22 receptor subunit alpha-2|IL-22R-alpha-2|class II cytokine receptor|cytokine receptor class-II member 10|cytokine receptor family 2 member 10|cytokine receptor family type 2, soluble 1|interleukin 22-binding protein|interleukin-22 receptor subunit alpha-2|interleukin-22-binding protein|zcytoR16 20121230 -9606 116412 ZNF837 - - HGNC:25164|Ensembl:ENSG00000152475 19 19q13.43 zinc finger protein 837 protein-coding ZNF837 zinc finger protein 837 O - 20121230 -9606 116437 LOC116437 - - - 12 12q24.33 uncharacterized LOC116437 miscRNA - - - - 20121230 -9606 116441 TM4SF18 - L6D HGNC:25181|Ensembl:ENSG00000163762|HPRD:14018|Vega:OTTHUMG00000159582 3 3q25.1 transmembrane 4 L six family member 18 protein-coding TM4SF18 transmembrane 4 L six family member 18 O transmembrane 4 L6 family member 18 20121230 -9606 116442 RAB39B RP13-228J13.2 MRX72 HGNC:16499|MIM:300774|Ensembl:ENSG00000155961|HPRD:06703|Vega:OTTHUMG00000022659 X Xq28 RAB39B, member RAS oncogene family protein-coding RAB39B RAB39B, member RAS oncogene family O ras-related protein Rab-39B 20121230 -9606 116443 GRIN3A - GluN3A|NMDAR-L|NR3A HGNC:16767|MIM:606650|Ensembl:ENSG00000198785|HPRD:09443|Vega:OTTHUMG00000020387 9 9q31.1 glutamate receptor, ionotropic, N-methyl-D-aspartate 3A protein-coding GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A O N-methyl-D-aspartate receptor subtype 3A|NMDAR3A|glutamate [NMDA] receptor subunit 3A 20121230 -9606 116444 GRIN3B - GluN3B|NR3B HGNC:16768|MIM:606651|Ensembl:ENSG00000116032|Vega:OTTHUMG00000181904 19 19p13.3 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B protein-coding GRIN3B glutamate receptor, ionotropic, N-methyl-D-aspartate 3B O N-methyl-D-aspartate receptor subtype 3B|NMDA receptor subunit 3B|NMDA type glutamate receptor subunit NR3B|NMDAR3B|glutamate [NMDA] receptor subunit 3B 20121230 -9606 116447 TOP1MT - - HGNC:29787|MIM:606387|Ensembl:ENSG00000184428|HPRD:16214|Vega:OTTHUMG00000164979 8 8q24.3 topoisomerase (DNA) I, mitochondrial protein-coding TOP1MT topoisomerase (DNA) I, mitochondrial O DNA topoisomerase I, mitochondrial|mitochondrial topoisomerase IB 20121230 -9606 116448 OLIG1 - BHLHB6|BHLHE21 HGNC:16983|MIM:606385|Ensembl:ENSG00000184221|HPRD:07333|Vega:OTTHUMG00000065064 21 21q22.11 oligodendrocyte transcription factor 1 protein-coding OLIG1 oligodendrocyte transcription factor 1 O basic domain, helix-loop-helix protein, class B, 6|class B basic helix-loop-helix protein 6|class E basic helix-loop-helix protein 21|oligo1|oligodendrocyte lineage transcription factor 1|oligodendrocyte-specific bHLH transcription factor 1 20121230 -9606 116449 CLNK - MIST HGNC:17438|MIM:611434|Ensembl:ENSG00000109684|HPRD:14720|Vega:OTTHUMG00000160062 4 4p16.1 cytokine-dependent hematopoietic cell linker protein-coding CLNK cytokine-dependent hematopoietic cell linker O mast cell immunoreceptor signal transducer 20121230 -9606 116461 TSEN15 - C1orf19|sen15 HGNC:16791|MIM:608756|Ensembl:ENSG00000198860|HPRD:12292|Vega:OTTHUMG00000035461 1 1q25 tRNA splicing endonuclease 15 homolog (S. cerevisiae) protein-coding TSEN15 tRNA splicing endonuclease 15 homolog (S. cerevisiae) O SEN15 homolog|hsSen15|tRNA-intron endonuclease Sen15|tRNA-splicing endonuclease subunit Sen15 20121230 -9606 116496 FAM129A GIG39 C1orf24|NIBAN HGNC:16784|Ensembl:ENSG00000135842|HPRD:10725|Vega:OTTHUMG00000035388 1 1q25 family with sequence similarity 129, member A protein-coding FAM129A family with sequence similarity 129, member A O cell growth inhibiting protein 39|cell growth-inhibiting gene 39 protein|protein Niban 20121230 -9606 116511 MAS1L DAAP-341G9.4 MAS-L|MRG|dJ994E9.2 HGNC:13961|MIM:607235|Ensembl:ENSG00000204687|HPRD:06251|Vega:OTTHUMG00000031089 6 6p21 MAS1 oncogene-like protein-coding MAS1L MAS1 oncogene-like O MAS-R|MAS1-like|mas-related G protein-coupled MRG|mas-related G-protein coupled receptor MRG 20121230 -9606 116512 MRGPRD - MRGD|TGR7 HGNC:29626|MIM:607231|Ensembl:ENSG00000172938|HPRD:06250|Vega:OTTHUMG00000167896 11 11q13.3 MAS-related GPR, member D protein-coding MRGPRD MAS-related GPR, member D O G-protein coupled receptor TGR7|beta-alanine receptor|mas-related G protein-coupled MRGD|mas-related G-protein coupled receptor member D 20121230 -9606 116519 APOA5 UNQ411/PRO773 APOAV|RAP3 HGNC:17288|MIM:606368|Ensembl:ENSG00000110243|HPRD:06966|Vega:OTTHUMG00000046116 11 11q23 apolipoprotein A-V protein-coding APOA5 apolipoprotein A-V O apo-AV|apolipoprotein A5|regeneration-associated protein 3 20121230 -9606 116534 MRGPRE - GPR167|MRGE HGNC:30694|MIM:607232|Ensembl:ENSG00000184350|Vega:OTTHUMG00000011708 11 11p15.4 MAS-related GPR, member E protein-coding MRGPRE MAS-related GPR, member E O G protein-coupled receptor 167|G-protein coupled receptor 167|mas-related G protein-coupled MRGE|mas-related G-protein coupled receptor member E 20121230 -9606 116535 MRGPRF hCG_27986 GPR140|GPR168|MRGF|RTA HGNC:24828|MIM:607233|Ensembl:ENSG00000172935|Vega:OTTHUMG00000167897 11 11q13.3 MAS-related GPR, member F protein-coding MRGPRF MAS-related GPR, member F O G protein-coupled receptor 140|G protein-coupled receptor 168|G protein-coupled receptor MrgF|G-protein coupled receptor 140|G-protein coupled receptor 168|mas-related G protein-coupled MRGF|mas-related G-protein coupled receptor member F|mas-related gene F protein|seven transmembrane helix receptor 20121230 -9606 116540 MRPL53 - L53MT HGNC:16684|MIM:611857|Ensembl:ENSG00000204822|HPRD:14771|Vega:OTTHUMG00000129961 2 2p13.1 mitochondrial ribosomal protein L53 protein-coding MRPL53 mitochondrial ribosomal protein L53 O 39S ribosomal protein L53, mitochondrial 20121230 -9606 116541 MRPL54 - L54mt|MRP-L54 HGNC:16685|MIM:611858|Ensembl:ENSG00000183617|HPRD:14772|Vega:OTTHUMG00000180873 19 19p13.3 mitochondrial ribosomal protein L54 protein-coding MRPL54 mitochondrial ribosomal protein L54 O 39S ribosomal protein L54, mitochondrial 20121230 -9606 116629 HTX3 - - MIM:606325 6 6q21 Heterotaxy, visceral, 3 unknown - - - - 20110215 -9606 116710 FRA18C - - HGNC:16929 18 18q22.2 fragile site, aphidicolin type, common, fra(18)(q22.2) other FRA18C fragile site, aphidicolin type, common, fra(18)(q22.2) O - 20110702 -9606 116729 PPP1R27 - DYSFIP1 HGNC:16813|Ensembl:ENSG00000182676|HPRD:17334|Vega:OTTHUMG00000177916 17 17q25.3 protein phosphatase 1, regulatory subunit 27 protein-coding PPP1R27 protein phosphatase 1, regulatory subunit 27 O dysferlin interacting protein 1|dysferlin-interacting protein 1 (toonin)|protein phosphatase 1 regulatory subunit 27|toonin 20121230 -9606 116730 RPL37P2 - PSANK1|RPL37_9_1150 HGNC:17092 11 11q13 ribosomal protein L37 pseudogene 2 pseudo RPL37P2 ribosomal protein L37 pseudogene 2 O - 20121230 -9606 116809 RPL38P1 - RPL38_1_417 HGNC:17093 3 3q21-q25 ribosomal protein L38 pseudogene 1 pseudo RPL38P1 ribosomal protein L38 pseudogene 1 O - 20121230 -9606 116828 N4BP2L2-IT2 - CG030 HGNC:25038 13 13q13.1 N4BPL2 intronic transcript 2 (non-protein coding) miscRNA N4BP2L2-IT2 N4BPL2 intronic transcript 2 (non-protein coding) O - 20121230 -9606 116832 RPL39L - RPL39L1 HGNC:17094|MIM:607547|Ensembl:ENSG00000163923|HPRD:09610|Vega:OTTHUMG00000156465 3 3q27 ribosomal protein L39-like protein-coding RPL39L ribosomal protein L39-like O 60S ribosomal protein L39-2|60S ribosomal protein L39-like|L39-2|ribosomal protein L39-like 1|ribosomal protein L39-like protein 20121230 -9606 116833 ANIB1 - AIB|AIB1 HGNC:17627|MIM:105800 7 7q11.2 aneurysm, intracranial berry 1 unknown ANIB1 aneurysm, intracranial berry 1 O - 20121209 -9606 116835 HSPA12B RP5-1009E24.4 C20orf60|dJ1009E24.2 HGNC:16193|MIM:610702|Ensembl:ENSG00000132622|HPRD:13683|Vega:OTTHUMG00000031755 20 20p13 heat shock 70kD protein 12B protein-coding HSPA12B heat shock 70kD protein 12B O heat shock 70 kDa protein 12B 20121230 -9606 116840 CNTROB PP1221 LIP8 HGNC:29616|MIM:611425|Ensembl:ENSG00000170037|HPRD:13991|Vega:OTTHUMG00000172932 17 17p13.1 centrobin, centrosomal BRCA2 interacting protein protein-coding CNTROB centrobin, centrosomal BRCA2 interacting protein O LYST-interacting protein 8|LYST-interacting protein LIP8|centrobin|centrosomal BRCA2-interacting protein 20121230 -9606 116841 SNAP47 RP5-870F10.2 C1orf142|HEL170|SNAP-47|SVAP1 HGNC:30669|Ensembl:ENSG00000143740|HPRD:17148|Vega:OTTHUMG00000037697 1 1q42.13 synaptosomal-associated protein, 47kDa protein-coding SNAP47 synaptosomal-associated protein, 47kDa O epididymis luminal protein 170|synaptosomal-associated 47 kDa protein|synaptosomal-associated protein 47 20121230 -9606 116842 LEAP2 - LEAP-2 HGNC:29571|MIM:611373|Ensembl:ENSG00000164406|HPRD:17269|Vega:OTTHUMG00000059837 5 5q31.1 liver expressed antimicrobial peptide 2 protein-coding LEAP2 liver expressed antimicrobial peptide 2 O liver-expressed antimicrobial peptide 2 20121230 -9606 116843 SLC18B1 RP1-55C23.6 C6orf192|dJ55C23.6 HGNC:21573|MIM:613361|Ensembl:ENSG00000146409|HPRD:12869|Vega:OTTHUMG00000015595 6 6q22.3-q23.3 solute carrier family 18, subfamily B, member 1 protein-coding SLC18B1 solute carrier family 18, subfamily B, member 1 O MFS-type transporter C6orf192|MFS-type transporter SLC18B1|solute carrier family 18 member B1 20121230 -9606 116844 LRG1 - HMFT1766|LRG HGNC:29480|MIM:611289|Ensembl:ENSG00000171236|HPRD:10056|Vega:OTTHUMG00000182010 19 19p13.3 leucine-rich alpha-2-glycoprotein 1 protein-coding LRG1 leucine-rich alpha-2-glycoprotein 1 O 1300008B03Rik|2310031E04Rik|leucine rich alpha 2 glycoprotein|leucine-rich alpha-2-glycoprotein 20121230 -9606 116931 MED12L PRO0314 NOPAR|TNRC11L|TRALP|TRALPUSH HGNC:16050|MIM:611318|Ensembl:ENSG00000144893|HPRD:10278|Vega:OTTHUMG00000159844 3 3q25.1 mediator complex subunit 12-like protein-coding MED12L mediator complex subunit 12-like O mediator of RNA polymerase II transcription subunit 12-like protein|mediator of RNA polymerase II transcription, subunit 12 homolog-like|no opposite paired repeat protein|thyroid hormone receptor-associated-like protein|trinucleotide repeat-containing gene 11 protein-like 20121230 -9606 116933 CLRN1-AS1 - CLRN1OS|UCRP HGNC:30895 3 3q25.1 CLRN1 antisense RNA 1 pseudo CLRN1-AS1 CLRN1 antisense RNA 1 O - 20121230 -9606 116935 RPL3P2 - RPL3-Hom|RPL3_1_679 HGNC:17834 6 6p21.3 ribosomal protein L3 pseudogene 2 pseudo RPL3P2 ribosomal protein L3 pseudogene 2 O - 20121230 -9606 116936 RNU86 - U82|U86 MIM:611069 22 22q13 RNA, U86 small nucleolar snoRNA - - - - 20121230 -9606 116937 SNORD83A - RNU83A|U83A HGNC:17131|MIM:611070 22 22q13 small nucleolar RNA, C/D box 83A snoRNA SNORD83A small nucleolar RNA, C/D box 83A O - 20121230 -9606 116938 SNORD83B - RNU83B|U83B HGNC:17132|MIM:611071 22 22q13 small nucleolar RNA, C/D box 83B snoRNA SNORD83B small nucleolar RNA, C/D box 83B O - 20121230 -9606 116966 WDR17 - - HGNC:16661|MIM:609005|Ensembl:ENSG00000150627|HPRD:16417|Vega:OTTHUMG00000160791 4 4q34 WD repeat domain 17 protein-coding WDR17 WD repeat domain 17 O WD repeat-containing protein 17 20121230 -9606 116969 ART5 UNQ575/PRO1137 ARTC5 HGNC:24049|MIM:610625|Ensembl:ENSG00000167311|HPRD:12493|Vega:OTTHUMG00000011842 11 11p15.4 ADP-ribosyltransferase 5 protein-coding ART5 ADP-ribosyltransferase 5 O ADP-ribosyltransferase C2 and C3 toxin-like 5|NAD(P)(+)--arginine ADP-ribosyltransferase 5|ecto-ADP-ribosyltransferase 5|mono(ADP-ribosyl)transferase 5 20121230 -9606 116983 ACAP3 - CENTB5 HGNC:16754|Ensembl:ENSG00000131584|HPRD:10820|Vega:OTTHUMG00000002235 1 - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 protein-coding ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 O arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3|centaurin, beta 5|centaurin-beta-5|cnt-b5 20121230 -9606 116984 ARAP2 - CENTD1|PARX HGNC:16924|MIM:606645|Ensembl:ENSG00000047365|HPRD:09439|Vega:OTTHUMG00000097811 4 4p14 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 O Arf and Rho GAP adapter protein 2|arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2|centaurin, delta 1|centaurin-delta-1|cnt-d1 20121230 -9606 116985 ARAP1 - CENTD2 HGNC:16925|MIM:606646|Ensembl:ENSG00000186635|HPRD:09440|Vega:OTTHUMG00000157102 11 11q13.4 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 O ARF-GAP, RHO-GAP, ankyrin repeat, and pleckstrin homology domains-containing protein 1|arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1|centaurin, delta 2|centaurin-delta-2|cnt-d2 20121230 -9606 116986 AGAP2 - CENTG1|GGAP2|PIKE HGNC:16921|MIM:605476|Ensembl:ENSG00000135439|HPRD:05687|Vega:OTTHUMG00000170285 12 12q14.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 protein-coding AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 O Arf GAP with GTP-binding protein-like, ANK repeat and PH domains 2|GTP-binding and GTPase activating protein 2|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2|centaurin, gamma 1|cnt-g1|phosphatidylinositol 3-kinase enhancer|phosphatidylinositol-3-kinase enhancer|phosphoinositide 3-kinase enhancer 20121230 -9606 116987 AGAP1 - AGAP-1|CENTG2|GGAP1|cnt-g2 HGNC:16922|MIM:608651|Ensembl:ENSG00000157985|HPRD:16359|Vega:OTTHUMG00000133293 2 2q37 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 O Arf GAP with GTP-binding protein-like, ANK repeat and PH domains 1|GTP-binding and GTPase-activating protein 1|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1|centaurin, gamma 2|centaurin-gamma-2 20121230 -9606 116988 AGAP3 - AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 HGNC:16923|Ensembl:ENSG00000133612|HPRD:16707|Vega:OTTHUMG00000158724 7 7q36.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding AGAP3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 O CRAM-associated GTPase|CRMP (collapsin response mediator protein) associated|MR1-interacting protein|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3|centaurin, gamma 3|centaurin-gamma-3 20121230 -9606 117084 CANDF1 - CMCT MIM:114580 2 2p22.3-p21 candidiasis, familial 1 unknown - - - - 20120622 -9606 117143 TADA1 - ADA1|HFI1|RP1-9E21.4|STAF42|TADA1L|hADA1 HGNC:30631|MIM:612763|Ensembl:ENSG00000152382|HPRD:18114|Vega:OTTHUMG00000034321 1 1q24.1 transcriptional adaptor 1 protein-coding TADA1 transcriptional adaptor 1 O SPT3-associated factor 42 (STAF42)|transcriptional adapter 1|transcriptional adapter 1-like protein|transcriptional adaptor 1 (HFI1 homolog, yeast) 20121230 -9606 117144 CATSPER1 - CATSPER|SPGF7 HGNC:17116|MIM:606389|Ensembl:ENSG00000175294|HPRD:09396|Vega:OTTHUMG00000166668 11 11q12.1 cation channel, sperm associated 1 protein-coding CATSPER1 cation channel, sperm associated 1 O cation channel sperm-associated protein 1|hCatSper|sperm ion channel|sperm-associated cation channel 1 20121230 -9606 117145 THEM4 - CTMP HGNC:17947|MIM:606388|Ensembl:ENSG00000159445|HPRD:16215|Vega:OTTHUMG00000013049 1 1q21 thioesterase superfamily member 4 protein-coding THEM4 thioesterase superfamily member 4 O C-terminal modulator protein|carboxyl-terminal modulator protein 20121230 -9606 117151 SLC31A1P1 - CTR1P|CTR1psi|SLC31A1P HGNC:17124 3 3q26.31 solute carrier family 31 (copper transporters), member 1 pseudogene 1 pseudo SLC31A1P1 solute carrier family 31 (copper transporters), member 1 pseudogene 1 O - 20121230 -9606 117153 MIA2 - - HGNC:18432|MIM:608001|Ensembl:ENSG00000150526|HPRD:12149|Vega:OTTHUMG00000028831 14 14q13.2 melanoma inhibitory activity 2 protein-coding MIA2 melanoma inhibitory activity 2 O melanoma inhibitory activity protein 2 20121230 -9606 117154 DACH2 RP11-345E19.1 - HGNC:16814|MIM:300608|Ensembl:ENSG00000126733|HPRD:06481|Vega:OTTHUMG00000021944 X Xq21.3 dachshund homolog 2 (Drosophila) protein-coding DACH2 dachshund homolog 2 (Drosophila) O dachshund homolog 2 20121230 -9606 117155 CATSPER2 - - HGNC:18810|MIM:607249|Ensembl:ENSG00000166762|HPRD:16236|Vega:OTTHUMG00000059902 15 15q15.3 cation channel, sperm associated 2 protein-coding CATSPER2 cation channel, sperm associated 2 O cation channel sperm-associated protein 2|sperm ion channel 20121230 -9606 117156 SCGB3A2 UNQ566/PRO1128 LU103|PNSP1|UGRP1|pnSP-1 HGNC:18391|MIM:606531|Ensembl:ENSG00000164265|HPRD:05940|Vega:OTTHUMG00000129729 5 5q32 secretoglobin, family 3A, member 2 protein-coding SCGB3A2 secretoglobin, family 3A, member 2 O pneumo secretory protein 1|secretoglobin family 3A member 2|uteroglobin-related protein 1 20121230 -9606 117157 SH2D1B - EAT2 HGNC:30416|MIM:608510|Ensembl:ENSG00000198574|HPRD:12248|Vega:OTTHUMG00000031377 1 1q23.3 SH2 domain containing 1B protein-coding SH2D1B SH2 domain containing 1B O EAT-2|EWS/FLI1-activated transcript 2|SH2 domain-containing molecule EAT2|SH2 domain-containing protein 1B 20121230 -9606 117159 DCD - AIDD|DCD-1|DSEP|HCAP|PIF HGNC:14669|MIM:606634|Ensembl:ENSG00000161634|HPRD:07363|Vega:OTTHUMG00000169937 12 12q13.1 dermcidin protein-coding DCD dermcidin O diffusible survival/evasion peptide|preproteolysin|proteolysis inducing factor|survival promoting peptide 20121230 -9606 117166 WFIKKN1 PSEC0040 C16orf12|RJD2|WFIKKN HGNC:30912|MIM:608021|Ensembl:ENSG00000127578|HPRD:12153|Vega:OTTHUMG00000090359 16 16p13.3 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 protein-coding WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 O GASP-2|WAP, FS, Ig, KU, and NTR-containing protein|WAP, follistatin, immunoglobulin, kunitz and NTR domain-containing protein|WAP, kazal, immunoglobulin, kunitz and NTR domain-containing protein 1|growth and differentiation factor-associated serum protein 2|hGASP-2 20121230 -9606 117177 RAB3IP - RABIN3 HGNC:16508|MIM:608686|Ensembl:ENSG00000127328|HPRD:10565|Vega:OTTHUMG00000169437 12 12q14.3 RAB3A interacting protein (rabin3) protein-coding RAB3IP RAB3A interacting protein (rabin3) O SSX2 interacting protein|SSX2-interacting protein|rab-3A-interacting protein|rab3A-interacting protein|rabin-3 20121230 -9606 117178 SSX2IP - ADIP HGNC:16509|MIM:608690|Ensembl:ENSG00000117155|HPRD:10566|Vega:OTTHUMG00000009926 1 1p22.3 synovial sarcoma, X breakpoint 2 interacting protein protein-coding SSX2IP synovial sarcoma, X breakpoint 2 interacting protein O SSX2-interacting protein|afadin DIL domain-interacting protein|afadin- and alpha-actinin-binding protein 20121230 -9606 117187 ATOD3 - - MIM:605804 20 20p Dermatitis, atopic, 3 unknown - - - - 20120622 -9606 117188 ATOD5 - ATPD5 MIM:605844 13 13q12-q14 Dermatitis, atopic, 5 unknown - - - - 20120622 -9606 117189 GRDX - GD3 MIM:300351 X Xp11 Graves disease, susceptibility to, X-linked unknown - - - - 20120622 -9606 117190 HPE6 - - MIM:605934 2 2q37.1 holoprosencephaly 6 unknown - - - - 20120622 -9606 117191 HYT1 - - MIM:603918 17 17q Hypertension, essential, susceptibility to, 1 unknown - - - - 20120622 -9606 117192 MNRI - - MIM:606190 1 1p11 meningioma, radiation-induced unknown - - - - 20120622 -9606 117193 THMA - THM MIM:275220 8 8q24.1 Tibial hemimelia unknown - - - - 20110215 -9606 117194 MRGPRX2 - MRGX2 HGNC:17983|MIM:607228|Ensembl:ENSG00000183695|HPRD:06247|Vega:OTTHUMG00000166098 11 11p15.1 MAS-related GPR, member X2 protein-coding MRGPRX2 MAS-related GPR, member X2 O G protein-coupled receptor MRGX2|mas-related G-protein coupled receptor member X2 20121230 -9606 117195 MRGPRX3 - GPCR|MRGX3|SNSR1|SNSR2 HGNC:17980|MIM:607229|Ensembl:ENSG00000179826|HPRD:06248|Vega:OTTHUMG00000166435 11 11p15.1 MAS-related GPR, member X3 protein-coding MRGPRX3 MAS-related GPR, member X3 O G protein-coupled receptor MRGX3|G protein-coupled receptor SNSR1|G protein-coupled receptor SNSR2|mas-related G-protein coupled receptor member X3|mas-related GPCR member X3|sensory neuron-specific G-protein coupled receptor 1/2 20121230 -9606 117196 MRGPRX4 - GPCR|MRGX4|SNSR6 HGNC:17617|MIM:607230|Ensembl:ENSG00000179817|HPRD:06249|Vega:OTTHUMG00000166442 11 11p15.1 MAS-related GPR, member X4 protein-coding MRGPRX4 MAS-related GPR, member X4 O G protein-coupled receptor MRGX4|G protein-coupled receptor SNSR5|G protein-coupled receptor SNSR6|mas-related G-protein coupled receptor member X4|sensory neuron-specific G-protein coupled receptor 5/6 20121230 -9606 117237 SXI2 - - MIM:300179 X Xq25-q26 X inactivation, familial skewed, 2 unknown - - - - 20120622 -9606 117245 HRASLS5 - HRLP5|RLP1|iNAT HGNC:24978|MIM:611474|Ensembl:ENSG00000168004|HPRD:13672|Vega:OTTHUMG00000167806 11 11q13.2 HRAS-like suppressor family, member 5 protein-coding HRASLS5 HRAS-like suppressor family, member 5 O H-rev107-like protein 5|HRAS-like suppressor 5|calcium-independent phosphatidylethanolamine N-acyltransferase|lecithin-retinol acyltransferase (LRAT)-like protein-1 20121230 -9606 117246 FTSJ3 SB92 EPCS3|SPB1 HGNC:17136|Ensembl:ENSG00000108592|HPRD:17024|Vega:OTTHUMG00000179012 17 17q23.3 FtsJ homolog 3 (E. coli) protein-coding FTSJ3 FtsJ homolog 3 (E. coli) O SPB1 RNA methyltransferase homolog|pre-rRNA processing protein FTSJ3|protein ftsJ homolog 3|putative rRNA methyltransferase 3|rRNA (uridine-2'-O-)-methyltransferase 3 20121230 -9606 117247 SLC16A10 RP11-428F8.3 MCT10|PRO0813|TAT1 HGNC:17027|MIM:607550|Ensembl:ENSG00000112394|HPRD:09613|Vega:OTTHUMG00000015371 6 6q21-q22 solute carrier family 16, member 10 (aromatic amino acid transporter) protein-coding SLC16A10 solute carrier family 16, member 10 (aromatic amino acid transporter) O MCT 10|T-type amino acid transporter 1|aromatic amino acid transporter 1|monocarboxylate transporter 10|solute carrier family 16 (monocarboxylic acid transporters), member 10|solute carrier family 16 member 10 20121230 -9606 117248 GALNTL2 UNQ770/PRO1564 GALNT13|GALNT15|GALNT7|PIH5 HGNC:21531|Ensembl:ENSG00000131386|HPRD:13563|Vega:OTTHUMG00000156893 3 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 protein-coding GALNTL2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 O UDP-GalNAc transferase T15|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7|galNAc-T-like protein 2|polypeptide GalNAc transferase-like protein 2|polypeptide N-acetylgalactosaminyltransferase 13|polypeptide N-acetylgalactosaminyltransferase-like protein 2|pp-GaNTase-like protein 2|pregnancy-induced hypertension syndrome-related protein 5|protein-UDP acetylgalactosaminyltransferase-like protein 2 20121230 -9606 117283 IP6K3 RP11-6B20.3 IHPK3|INSP6K3 HGNC:17269|MIM:606993|Ensembl:ENSG00000161896|HPRD:07381|Vega:OTTHUMG00000014531 6 6p21.31 inositol hexakisphosphate kinase 3 protein-coding IP6K3 inositol hexakisphosphate kinase 3 O ATP:1D-myo-inositol-hexakisphosphate phosphotransferase|InsP6 kinase 3|inositol hexaphosphate kinase 3 20121230 -9606 117285 DEFB118 - C20orf63|DEFB-18|ESC42|ESP13.6 HGNC:16196|MIM:607650|Ensembl:ENSG00000131068|HPRD:09629|Vega:OTTHUMG00000032161 20 20q11.21 defensin, beta 118 protein-coding DEFB118 defensin, beta 118 O beta-defensin 118|defensin, beta 18|epididymal secretory protein 13.6|epididymus specific clone 42 20121230 -9606 117286 CIB3 - KIP3 HGNC:24580|MIM:610645|Ensembl:ENSG00000141977|HPRD:16713 19 19p13.12 calcium and integrin binding family member 3 protein-coding CIB3 calcium and integrin binding family member 3 O DNA-dependent protein kinase catalytic subunit-interacting protein 3|KIP 3|calcium and integrin-binding family member 3|kinase-interacting protein 3 20121230 -9606 117289 TAGAP FKSG15 ARHGAP47|IDDM21|TAGAP1 HGNC:15669|MIM:609667|Ensembl:ENSG00000164691|HPRD:18143|Vega:OTTHUMG00000015923 6 6q25.3 T-cell activation RhoGTPase activating protein protein-coding TAGAP T-cell activation RhoGTPase activating protein O T-cell activation GTPase-activating protein|T-cell activation Rho GTPase-activating protein 20121230 -9606 117531 TMC1 RP11-296H15.1 DFNA36|DFNB11|DFNB7 HGNC:16513|MIM:606706|Ensembl:ENSG00000165091|HPRD:05988|Vega:OTTHUMG00000020014 9 9q21.12 transmembrane channel-like 1 protein-coding TMC1 transmembrane channel-like 1 O transmembrane channel-like protein 1|transmembrane cochlear-expressed protein 1|transmembrane, cochlear expressed, 1 20121230 -9606 117532 TMC2 RP4-686C3.3 C20orf145|dJ686C3.3 HGNC:16527|MIM:606707|Ensembl:ENSG00000149488|HPRD:09463|Vega:OTTHUMG00000031698 20 20p13 transmembrane channel-like 2 protein-coding TMC2 transmembrane channel-like 2 O transmembrane channel-like protein 2|transmembrane cochlear-expressed protein 2|transmembrane, cochlear expressed, 2 20121230 -9606 117579 RLN3 UNQ6188/PRO20213 H3|RXN3|ZINS4|insl7 HGNC:17135|MIM:606855|Ensembl:ENSG00000171136|HPRD:06031|Vega:OTTHUMG00000181986 19 19p13.2 relaxin 3 protein-coding RLN3 relaxin 3 O insulin-like 7|insulin-like peptide 7|insulin-like peptide INSL7|prorelaxin H3|relaxin-3 20121230 -9606 117581 TWIST2 - DERMO1|SETLSS|bHLHa39 HGNC:20670|MIM:607556|Ensembl:ENSG00000233608|HPRD:09616|Vega:OTTHUMG00000152836 2 2q37.3 twist basic helix-loop-helix transcription factor 2 protein-coding TWIST2 twist basic helix-loop-helix transcription factor 2 O class A basic helix-loop-helix protein 39|dermis-expressed protein 1|twist homolog 2|twist-related bHLH protein Dermo1|twist-related protein 2 20121230 -9606 117583 PARD3B - ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb HGNC:14446|Ensembl:ENSG00000116117|HPRD:09795|Vega:OTTHUMG00000154562 2 2q33.3 par-3 partitioning defective 3 homolog B (C. elegans) protein-coding PARD3B par-3 partitioning defective 3 homolog B (C. elegans) O PAR3-L protein|PAR3-beta|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 19 protein|partitioning defective 3 homolog B|partitioning defective 3-like protein|partitioning-defective 3-beta 20121230 -9606 117584 RFFL - CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L HGNC:24821|MIM:609735|Ensembl:ENSG00000092871|HPRD:11489|Vega:OTTHUMG00000132933 17 17q12 ring finger and FYVE-like domain containing E3 ubiquitin protein ligase protein-coding RFFL ring finger and FYVE-like domain containing E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase rififylin|FYVE-RING finger protein SAKURA|RING finger and FYVE-like domain-containing protein 1|RING finger protein 189|caspase regulator CARP2|caspases-8 and -10-associated RING finger protein 2|ring finger and FYVE-like domain containing 1 20121230 -9606 117608 ZNF354B - KID2 HGNC:17197|Ensembl:ENSG00000178338|HPRD:15784|Vega:OTTHUMG00000130896 5 5q35.3 zinc finger protein 354B protein-coding ZNF354B zinc finger protein 354B O - 20121230 -9606 117852 TRIM78P - TRIMP1 HGNC:17232 11 11p15 tripartite motif containing 78, pseudogene pseudo TRIM78P tripartite motif containing 78, pseudogene O - 20121017 -9606 117854 TRIM6 - RNF89 HGNC:16277|MIM:607564|Ensembl:ENSG00000121236|HPRD:12123|Vega:OTTHUMG00000150029 11 11p15.4 tripartite motif containing 6 protein-coding TRIM6 tripartite motif containing 6 O RING finger protein 89|tripartite motif-containing 6|tripartite motif-containing protein 6 20121230 -9606 118421 LINC00161 - C21orf100|NCRNA00161 HGNC:17138|HPRD:10733 21 21q21.3 long intergenic non-protein coding RNA 161 miscRNA LINC00161 long intergenic non-protein coding RNA 161 O - 20121230 -9606 118424 UBE2J2 RP5-902P8.8 NCUBE-2|NCUBE2|PRO2121 HGNC:19268|Ensembl:ENSG00000160087|HPRD:15600|Vega:OTTHUMG00000001911 1 1p36.33 ubiquitin-conjugating enzyme E2, J2 protein-coding UBE2J2 ubiquitin-conjugating enzyme E2, J2 O non-canonical ubiquitin-conjugating enzyme 2|ubiquitin conjugating enzyme 6|ubiquitin conjugating enzyme E2, J2|ubiquitin-conjugating enzyme E2 J2|ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast)|yeast UBC6 homolog 20121230 -9606 118425 GDEP - PCAN1 MIM:609717|HPRD:17035 4 4q21.1 gene differentially expressed in prostate miscRNA - - - - 20121230 -9606 118426 LOH12CR1 - LOH1CR12 HGNC:17950|Ensembl:ENSG00000165714|HPRD:17439|Vega:OTTHUMG00000168542 12 12p12 loss of heterozygosity, 12, chromosomal region 1 protein-coding LOH12CR1 loss of heterozygosity, 12, chromosomal region 1 O loss of heterozygosity 12 chromosomal region 1 protein 20121230 -9606 118427 OLFM3 RP11-556K13.2 NOE3|NOELIN3|NOELIN3_V1|NOELIN3_V2|NOELIN3_V3|NOELIN3_V4|NOELIN3_V5|NOELIN3_V6|OPTIMEDIN HGNC:17990|MIM:607567|Ensembl:ENSG00000118733|Vega:OTTHUMG00000010941 1 1p22 olfactomedin 3 protein-coding OLFM3 olfactomedin 3 O noelin 3|noelin-3|olfactomedin related ER localized protein 3|olfactomedin-3 20121230 -9606 118429 ANTXR2 - CMG-2|CMG2|ISH|JHF HGNC:21732|MIM:608041|Ensembl:ENSG00000163297|HPRD:07452|Vega:OTTHUMG00000151982 4 4q21.21 anthrax toxin receptor 2 protein-coding ANTXR2 anthrax toxin receptor 2 O capillary morphogenesis gene 2 protein|capillary morphogenesis protein 2 20121230 -9606 118430 MUCL1 UNQ590/PRO1160 SBEM HGNC:30588|MIM:610857|Ensembl:ENSG00000172551|HPRD:17290|Vega:OTTHUMG00000169815 12 12q mucin-like 1 protein-coding MUCL1 mucin-like 1 O mucin-like protein 1|small breast epithelial mucin 20121230 -9606 118432 RPL29P2 - RPL29_10_1510 HGNC:17334 17 17p13 ribosomal protein L29 pseudogene 2 pseudo RPL29P2 ribosomal protein L29 pseudogene 2 O - 20121230 -9606 118433 RPL23AP7 - RPL23AL1|RPL23A_6_267|bA395L14.9 HGNC:17336 2 2q14 ribosomal protein L23a pseudogene 7 pseudo RPL23AP7 ribosomal protein L23a pseudogene 7 O - 20121230 -9606 118442 GPR62 - GPCR8|KPG_005 HGNC:13301|MIM:606917|Ensembl:ENSG00000180929|HPRD:06078|Vega:OTTHUMG00000157367 3 3p21.1 G protein-coupled receptor 62 protein-coding GPR62 G protein-coupled receptor 62 O G-protein coupled receptor GPCR8|G-protein coupled receptor KPG_005|hGPCR8|probable G-protein coupled receptor 62 20121230 -9606 118460 EXOSC6 - EAP4|MTR3|Mtr3p|hMtr3p|p11 HGNC:19055|MIM:606490|Ensembl:ENSG00000223496|HPRD:12107|Vega:OTTHUMG00000137578 16 16q22.1 exosome component 6 protein-coding EXOSC6 exosome component 6 O Mtr3 (mRNA transport regulator 3)-homolog|exosome complex component MTR3|exosome complex exonuclease MTR3|hMtr3|homolog of yeast mRNA transport regulator 3|mRNA transport regulator 3 homolog 20121230 -9606 118461 C10orf71 - - HGNC:26973|Ensembl:ENSG00000177354|HPRD:10699|Vega:OTTHUMG00000018190 10 10q11.23 chromosome 10 open reading frame 71 protein-coding C10orf71 chromosome 10 open reading frame 71 O uncharacterized protein C10orf71 20121230 -9606 118471 PRAP1 UNQ608/PRO1195 PRO1195|RP11-122K13.6|UPA HGNC:23304|MIM:609776|Ensembl:ENSG00000165828|HPRD:17898|Vega:OTTHUMG00000019312 10 10q26.3 proline-rich acidic protein 1 protein-coding PRAP1 proline-rich acidic protein 1 O epididymis tissue protein Li 178 20121230 -9606 118472 ZNF511 - - HGNC:28445|Ensembl:ENSG00000198546|HPRD:15812|Vega:OTTHUMG00000019317 10 10q26.3 zinc finger protein 511 protein-coding ZNF511 zinc finger protein 511 O - 20121230 -9606 118487 CHCHD1 - C10orf34|C2360 HGNC:23518|MIM:608842|Ensembl:ENSG00000172586|HPRD:12313|Vega:OTTHUMG00000018475 10 10q22.2 coiled-coil-helix-coiled-coil-helix domain containing 1 protein-coding CHCHD1 coiled-coil-helix-coiled-coil-helix domain containing 1 O coiled-coil-helix-coiled-coil-helix domain-containing protein 1|nuclear protein C2360 20121230 -9606 118490 MSS51 RP11-345K20.3 ZMYND17 HGNC:21000|MIM:614773|Ensembl:ENSG00000166343|HPRD:15742|Vega:OTTHUMG00000018464 10 10q22.2 MSS51 mitochondrial translational activator homolog (S. cerevisiae) protein-coding MSS51 MSS51 mitochondrial translational activator homolog (S. cerevisiae) O putative protein MSS51 homolog, mitochondrial|zinc finger MYND domain-containing protein 17|zinc finger, MYND domain containing 17|zinc finger, MYND-type containing 17 20121230 -9606 118491 TTC18 RP11-152N13.6 - HGNC:30726|Ensembl:ENSG00000156042|HPRD:15583|Vega:OTTHUMG00000018459 10 10q22.2 tetratricopeptide repeat domain 18 protein-coding TTC18 tetratricopeptide repeat domain 18 O TPR repeat protein 18|tetratricopeptide repeat protein 18|tetratricopeptide repeat-containing protein (LOC118491) 20121230 -9606 118611 C10orf90 RP11-422P15.2 FATS|bA422P15.2 HGNC:26563|Ensembl:ENSG00000154493|HPRD:16587|Vega:OTTHUMG00000019245 10 10q26.2 chromosome 10 open reading frame 90 protein-coding C10orf90 chromosome 10 open reading frame 90 O centrosomal protein C10orf90|fragile-site associated tumor suppressor homolog 20121230 -9606 118663 BTBD16 - C10orf87 HGNC:26340|Ensembl:ENSG00000138152|HPRD:12594|Vega:OTTHUMG00000019182 10 10q26.13 BTB (POZ) domain containing 16 protein-coding BTBD16 BTB (POZ) domain containing 16 O BTB/POZ domain-containing protein 16 20121230 -9606 118670 FAM24A - - HGNC:23470|Ensembl:ENSG00000203795|HPRD:18720|Vega:OTTHUMG00000019193 10 10q26.13 family with sequence similarity 24, member A protein-coding FAM24A family with sequence similarity 24, member A O protein FAM24A 20121230 -9606 118672 PSTK - C10orf89 HGNC:28578|MIM:611310|Ensembl:ENSG00000179988|HPRD:16586|Vega:OTTHUMG00000019191 10 10q26.13 phosphoseryl-tRNA kinase protein-coding PSTK phosphoseryl-tRNA kinase O L-seryl-tRNA(Sec) kinase|O-phosphoseryl-tRNA(Sec) kinase 20121230 -9606 118738 ZNF488 RP11-463P17.6 - HGNC:23535|Ensembl:ENSG00000165388|HPRD:15801|Vega:OTTHUMG00000018148 10 10q11.22 zinc finger protein 488 protein-coding ZNF488 zinc finger protein 488 O - 20121230 -9606 118788 PIK3AP1 - BCAP|RP11-34E5.3 HGNC:30034|MIM:607942|Ensembl:ENSG00000155629|HPRD:06401|Vega:OTTHUMG00000018838 10 10q24.1 phosphoinositide-3-kinase adaptor protein 1 protein-coding PIK3AP1 phosphoinositide-3-kinase adaptor protein 1 O B cell adaptor protein|B-cell adapter for phosphoinositide 3-kinase|B-cell phosphoinositide 3-kinase adapter protein 1|phosphoinositide 3-kinase adapter protein 1 20121230 -9606 118812 MORN4 RP11-548K23.4 C10orf83|bA548K23.4 HGNC:24001|Ensembl:ENSG00000171160|HPRD:16584|Vega:OTTHUMG00000018861 10 10q24.2 MORN repeat containing 4 protein-coding MORN4 MORN repeat containing 4 O 44050 protein|MORN repeat-containing protein 4|protein 44050|retinophilin 20121230 -9606 118813 ZFYVE27 - PROTRUDIN|RP11-459F3.2|SPG33 HGNC:26559|MIM:610243|Ensembl:ENSG00000155256|HPRD:15735|Vega:OTTHUMG00000018867 10 10q24.2 zinc finger, FYVE domain containing 27 protein-coding ZFYVE27 zinc finger, FYVE domain containing 27 O protrudin 20121230 -9606 118856 MMP21 - - HGNC:14357|MIM:608416|Ensembl:ENSG00000154485|HPRD:07003|Vega:OTTHUMG00000019235 10 10q26.13 matrix metallopeptidase 21 protein-coding MMP21 matrix metallopeptidase 21 O MMP-21|matrix metalloproteinase 21|matrix metalloproteinase-21 20121230 -9606 118881 COMTD1 UNQ766/PRO1558 - HGNC:26309|Ensembl:ENSG00000165644|HPRD:08678|Vega:OTTHUMG00000018518 10 10q22.2 catechol-O-methyltransferase domain containing 1 protein-coding COMTD1 catechol-O-methyltransferase domain containing 1 O catechol O-methyltransferase domain-containing protein 1 20121230 -9606 118924 FRA10AC1 PRO2972 C10orf4|F26C11.1-like|FRA10A HGNC:1162|MIM:608866|Ensembl:ENSG00000148690|HPRD:12319|Vega:OTTHUMG00000018776 10 10q23.33 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 protein-coding FRA10AC1 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 O fragile site 10q23.3|protein FRA10AC1|rare folic acid-type fragile site, FRA(10)(q23.3), candidate gene 1 20121230 -9606 118932 ANKRD22 - - HGNC:28321|Ensembl:ENSG00000152766|HPRD:12461|Vega:OTTHUMG00000018699 10 10q23.31 ankyrin repeat domain 22 protein-coding ANKRD22 ankyrin repeat domain 22 O ankyrin repeat domain-containing protein 22 20121230 -9606 118945 CTSL1P1 - CTSLL|CTSLL1 HGNC:2539 10 10q23.2 cathepsin L1 pseudogene 1 pseudo CTSL1P1 cathepsin L1 pseudogene 1 O - 20121230 -9606 118980 SFXN2 RP11-47A8.2 - HGNC:16086|Ensembl:ENSG00000156398|HPRD:18045|Vega:OTTHUMG00000018967 10 10q24.32 sideroflexin 2 protein-coding SFXN2 sideroflexin 2 O sideroflexin-2 20121230 -9606 118987 PDZD8 - PDZK8|bA129M16.2 HGNC:26974|MIM:614235|Ensembl:ENSG00000165650|HPRD:11423|Vega:OTTHUMG00000019122 10 10q26.12 PDZ domain containing 8 protein-coding PDZD8 PDZ domain containing 8 O PDZ domain-containing protein 8|sarcoma antigen NY-SAR-104|sarcoma antigen NY-SAR-84|sarcoma antigen NY-SAR-84/NY-SAR-104 20121230 -9606 119016 AGAP4 - CTGLF1|MRIP2 HGNC:23459|Ensembl:ENSG00000188234|HPRD:16771|Vega:OTTHUMG00000018088 10 10q11.22 ArfGAP with GTPase domain, ankyrin repeat and PH domain 4 protein-coding AGAP4 ArfGAP with GTPase domain, ankyrin repeat and PH domain 4 O AGAP-4|ARF GTPase-activating protein|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4|centaurin, gamma-like family, member 1|centaurin-gamma-like family member 1 20121230 -9606 119032 C10orf32 RP11-753C18.9 RP11-753C18.6 HGNC:23516|Ensembl:ENSG00000166275|HPRD:12571|Vega:OTTHUMG00000018975 10 10q24.32 chromosome 10 open reading frame 32 protein-coding C10orf32 chromosome 10 open reading frame 32 O UPF0693 protein C10orf32 20121230 -9606 119180 LYZL2 - - HGNC:29613|MIM:612748|Ensembl:ENSG00000151033|HPRD:14337|Vega:OTTHUMG00000017898 10 10p11.23 lysozyme-like 2 protein-coding LYZL2 lysozyme-like 2 O lysozyme 2|lysozyme-2|lysozyme-like protein 2 20121230 -9606 119358 SNRPD2P1 - SNRPD2P|bA478K7.1 HGNC:31459 10 10q23.31 small nuclear ribonucleoprotein D2 pseudogene 1 pseudo SNRPD2P1 small nuclear ribonucleoprotein D2 pseudogene 1 O - 20121230 -9606 119369 NUDT9P1 - C10orf98|bA56M3.1 HGNC:28523 10 10q23.32 nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene 1 pseudo NUDT9P1 nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene 1 O - 20121230 -9606 119385 AGAP11 - - HGNC:29421 10 10q23.2 ankyrin repeat and GTPase domain Arf GTPase activating protein 11 protein-coding AGAP11 ankyrin repeat and GTPase domain Arf GTPase activating protein 11 O AGAP-11|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 11 20121230 -9606 119391 GSTO2 RP11-127L20.2 GSTO 2-2|bA127L20.1 HGNC:23064|MIM:612314|Ensembl:ENSG00000065621|HPRD:13614|Vega:OTTHUMG00000019006 10 10q25.1 glutathione S-transferase omega 2 protein-coding GSTO2 glutathione S-transferase omega 2 O GSTO-2|MMA(V) reductase|bA127L20.1 (novel glutathione-S-transferase)|glutathione S-transferase omega 2-2|glutathione S-transferase omega-2|glutathione-S-transferase-like protein|glutathione-dependent dehydroascorbate reductase|monomethylarsonic acid reductase 20121230 -9606 119392 SFR1 RP11-373N18.1 C10orf78|MEI5|MEIR5|bA373N18.1 HGNC:29574|Ensembl:ENSG00000156384|HPRD:12590|Vega:OTTHUMG00000019000 10 10q25.1 SWI5-dependent recombination repair 1 protein-coding SFR1 SWI5-dependent recombination repair 1 O MEI5 recombination repair protein homolog|SWI5-dependent recombination repair protein 1|meiosis protein 5 homolog|swi5-dependent recombination DNA repair protein 1 homolog 20121230 -9606 119395 CALHM3 - FAM26A|bA225H22.7 HGNC:23458|Ensembl:ENSG00000183128|HPRD:13300|Vega:OTTHUMG00000018989 10 10q24.33 calcium homeostasis modulator 3 protein-coding CALHM3 calcium homeostasis modulator 3 O calcium homeostasis modulator protein 3|family with sequence similarity 26, member A 20121230 -9606 119437 CTAGE7P - CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 HGNC:25111 10 10q26.3 CTAGE family, member 7, pseudogene pseudo CTAGE7P CTAGE family, member 7, pseudogene O - 20121230 -9606 119467 CLRN3 - TMEM12|USH3AL1 HGNC:20795|Ensembl:ENSG00000180745|HPRD:14553|Vega:OTTHUMG00000019253 10 10q26.2 clarin 3 protein-coding CLRN3 clarin 3 O clarin-3|transmembrane protein 12|usher syndrome type-3A-like protein 1 20121230 -9606 119504 ANAPC16 - APC16|C10orf104|CENP-27|MSAG|bA570G20.3 HGNC:26976|MIM:613427|Ensembl:ENSG00000166295|HPRD:12554|Vega:OTTHUMG00000018433 10 10q22.1 anaphase promoting complex subunit 16 protein-coding ANAPC16 anaphase promoting complex subunit 16 O anaphase-promoting complex subunit 16|centromere protein 27|cyclosome subunit 16|metabolic syndrome-associated protein 20121230 -9606 119548 PNLIPRP3 - - HGNC:23492|Ensembl:ENSG00000203837|HPRD:18542|Vega:OTTHUMG00000019100 10 10q25.3 pancreatic lipase-related protein 3 protein-coding PNLIPRP3 pancreatic lipase-related protein 3 O PL-RP3 20121230 -9606 119559 SFXN4 - BCRM1 HGNC:16088|Ensembl:ENSG00000183605|HPRD:18046|Vega:OTTHUMG00000019147 10 10q26.11 sideroflexin 4 protein-coding SFXN4 sideroflexin 4 O breast cancer resistance marker 1|sideroflexin-4 20121230 -9606 119587 CPXM2 UNQ676/PRO1310 CPX2|UNQ676 HGNC:26977|Ensembl:ENSG00000121898|HPRD:08517|Vega:OTTHUMG00000019206 10 10q26.13 carboxypeptidase X (M14 family), member 2 protein-coding CPXM2 carboxypeptidase X (M14 family), member 2 O 4632435C11Rik|carboxypeptidase Hlo|carboxypeptidase-like protein X2|cytosolic carboxypeptidase|inactive carboxypeptidase-like protein X2 20121230 -9606 119678 OR52E2 - - HGNC:14769|Ensembl:ENSG00000176787|HPRD:15009|Vega:OTTHUMG00000066608 11 11p15.4 olfactory receptor, family 52, subfamily E, member 2 protein-coding OR52E2 olfactory receptor, family 52, subfamily E, member 2 O olfactory receptor 52E2|olfactory receptor, family 10, subfamily AC, member 1 pseudogene 20121230 -9606 119679 OR52J3 - OR11-32 HGNC:14799|Ensembl:ENSG00000205495|HPRD:15017|Vega:OTTHUMG00000066600 11 11p15.4 olfactory receptor, family 52, subfamily J, member 3 protein-coding OR52J3 olfactory receptor, family 52, subfamily J, member 3 O olfactory receptor 52J3|olfactory receptor OR11-32 20121230 -9606 119682 OR51L1 - OR11-31 HGNC:14759|Ensembl:ENSG00000176798|HPRD:11810|Vega:OTTHUMG00000066605 11 11p15.4 olfactory receptor, family 51, subfamily L, member 1 protein-coding OR51L1 olfactory receptor, family 51, subfamily L, member 1 O olfactory receptor 51L1|olfactory receptor OR11-31 20121230 -9606 119687 OR51A7 - OR11-27 HGNC:15188|Ensembl:ENSG00000176895|HPRD:14992|Vega:OTTHUMG00000066502 11 11p15.4 olfactory receptor, family 51, subfamily A, member 7 protein-coding OR51A7 olfactory receptor, family 51, subfamily A, member 7 O olfactory receptor 51A7|olfactory receptor OR11-27 20121230 -9606 119692 OR51S1 - OR11-24 HGNC:15204|Ensembl:ENSG00000176922|HPRD:17739|Vega:OTTHUMG00000066506 11 11p15.4 olfactory receptor, family 51, subfamily S, member 1 protein-coding OR51S1 olfactory receptor, family 51, subfamily S, member 1 O olfactory receptor 51S1|olfactory receptor OR11-24 20121230 -9606 119694 OR51F2 - OR11-23 HGNC:15197|Ensembl:ENSG00000176925|HPRD:17738|Vega:OTTHUMG00000066508 11 11p15.4 olfactory receptor, family 51, subfamily F, member 2 protein-coding OR51F2 olfactory receptor, family 51, subfamily F, member 2 O olfactory receptor 51F2|olfactory receptor OR11-23 20121230 -9606 119695 OR52R1 - OR11-22 HGNC:15235|Ensembl:ENSG00000176937|HPRD:15024|Vega:OTTHUMG00000066510 11 11p15.4 olfactory receptor, family 52, subfamily R, member 1 protein-coding OR52R1 olfactory receptor, family 52, subfamily R, member 1 O olfactory receptor 52R1|olfactory receptor OR11-22 20121230 -9606 119696 OR51N1P - - HGNC:14757 11 11p15.4 olfactory receptor, family 51, subfamily N, member 1 pseudogene pseudo OR51N1P olfactory receptor, family 51, subfamily N, member 1 pseudogene O - 20121230 -9606 119710 C11orf74 - - HGNC:25142|Ensembl:ENSG00000166352|HPRD:14019|Vega:OTTHUMG00000166397 11 11p12 chromosome 11 open reading frame 74 protein-coding C11orf74 chromosome 11 open reading frame 74 O HEPIS|uncharacterized protein C11orf74 20121230 -9606 119722 KRT18P14 - KRT18L4 HGNC:6433 11 11p13 keratin 18 pseudogene 14 pseudo KRT18P14 keratin 18 pseudogene 14 O - 20121230 -9606 119749 OR4C46 - - HGNC:31271|MIM:614273|Ensembl:ENSG00000185926|HPRD:14964|Vega:OTTHUMG00000166705 11 11p11.12 olfactory receptor, family 4, subfamily C, member 46 protein-coding OR4C46 olfactory receptor, family 4, subfamily C, member 46 O olfactory receptor 4C46 20121230 -9606 119750 OR4C2P - OR4C8P HGNC:14696 11 11p11.2 olfactory receptor, family 4, subfamily C, member 2 pseudogene pseudo OR4C2P olfactory receptor, family 4, subfamily C, member 2 pseudogene O - 20121230 -9606 119764 OR4X2 - OR11-105 HGNC:15184|Ensembl:ENSG00000172208|HPRD:14990|Vega:OTTHUMG00000165302 11 11p11.2 olfactory receptor, family 4, subfamily X, member 2 protein-coding OR4X2 olfactory receptor, family 4, subfamily X, member 2 O olfactory receptor 4X2|olfactory receptor OR11-105 20121230 -9606 119765 OR4B1 - OR11-106|OST208 HGNC:8290|Ensembl:ENSG00000175619|HPRD:14960|Vega:OTTHUMG00000166576 11 11p11.2 olfactory receptor, family 4, subfamily B, member 1 protein-coding OR4B1 olfactory receptor, family 4, subfamily B, member 1 O olfactory receptor 4B1|olfactory receptor OR11-106 20121230 -9606 119772 OR52M1 - OR11-11|OR52M1P|OR52M3P HGNC:15225|Ensembl:ENSG00000197790|HPRD:15020|Vega:OTTHUMG00000165706 11 11p15.4 olfactory receptor, family 52, subfamily M, member 1 protein-coding OR52M1 olfactory receptor, family 52, subfamily M, member 1 O olfactory receptor 52M1|olfactory receptor OR11-11|olfactory receptor, family 52, subfamily M, member 1 pseudogene|olfactory receptor, family 52, subfamily M, member 3 pseudogene 20121230 -9606 119774 OR52K2 - OR11-7 HGNC:15223|Ensembl:ENSG00000181963|HPRD:15019|Vega:OTTHUMG00000165703 11 11p15.4 olfactory receptor, family 52, subfamily K, member 2 protein-coding OR52K2 olfactory receptor, family 52, subfamily K, member 2 O olfactory receptor 52K2|olfactory receptor OR11-7 20121230 -9606 119775 OR52P2P - - HGNC:15233 11 11p15.4 olfactory receptor, family 52, subfamily P, member 2 pseudogene pseudo OR52P2P olfactory receptor, family 52, subfamily P, member 2 pseudogene O - 20121230 -9606 120065 OR5P2 - JCG3|JCG4 HGNC:14783|Ensembl:ENSG00000183303|HPRD:17769|Vega:OTTHUMG00000165668 11 11p15.4 olfactory receptor, family 5, subfamily P, member 2 protein-coding OR5P2 olfactory receptor, family 5, subfamily P, member 2 O olfactory receptor 5P2|olfactory receptor OR11-93|olfactory receptor-like protein JCG3 20121230 -9606 120066 OR5P3 - JCG1 HGNC:14784|Ensembl:ENSG00000182334|HPRD:17770|Vega:OTTHUMG00000165669 11 11p15.4 olfactory receptor, family 5, subfamily P, member 3 protein-coding OR5P3 olfactory receptor, family 5, subfamily P, member 3 O olfactory receptor 5P3|olfactory receptor OR11-94|olfactory receptor-like protein JCG1 20121230 -9606 120071 GYLTL1B PP5656 LARGE2 HGNC:16522|MIM:609709|Ensembl:ENSG00000165905|HPRD:13618|Vega:OTTHUMG00000167037 11 11p11.2 glycosyltransferase-like 1B protein-coding GYLTL1B glycosyltransferase-like 1B O glycosyltransferase-like protein LARGE2|like-glycosyltransferase 2|ortholog of mouse glycosyltransferase-like 1B 20121230 -9606 120103 SLC36A4 - PAT4 HGNC:19660|MIM:613760|Ensembl:ENSG00000180773|HPRD:15379|Vega:OTTHUMG00000167368 11 11q21 solute carrier family 36 (proton/amino acid symporter), member 4 protein-coding SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 O proton-coupled amino acid transporter 4|proton/amino acid transporter 4|solute carrier family 36 member 4 20121230 -9606 120114 FAT3 - CDHF15|CDHR10 HGNC:23112|MIM:612483|Ensembl:ENSG00000165323|Vega:OTTHUMG00000154468 11 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) protein-coding FAT3 FAT tumor suppressor homolog 3 (Drosophila) O cadherin family member 15|cadherin-related family member 10|hFat3|protocadherin Fat 3 20121230 -9606 120126 UBTFL2 - - HGNC:35169 11 11q14.3 upstream binding transcription factor, RNA polymerase I-like 2 (pseudogene) pseudo UBTFL2 upstream binding transcription factor, RNA polymerase I-like 2 (pseudogene) O - 20121230 -9606 120146 TRIM64 - C11orf28|TRIM64A HGNC:14663 11 11q14.3 tripartite motif containing 64 protein-coding TRIM64 tripartite motif containing 64 O tripartite motif-containing 64|tripartite motif-containing protein 64 20121211 -9606 120224 TMEM45B - - HGNC:25194|Ensembl:ENSG00000151715|HPRD:14020|Vega:OTTHUMG00000165760 11 11q24.3 transmembrane protein 45B protein-coding TMEM45B transmembrane protein 45B O - 20121230 -9606 120227 CYP2R1 - - HGNC:20580|MIM:608713|Ensembl:ENSG00000186104|HPRD:10569|Vega:OTTHUMG00000165900 11 11p15.2 cytochrome P450, family 2, subfamily R, polypeptide 1 protein-coding CYP2R1 cytochrome P450, family 2, subfamily R, polypeptide 1 O cytochrome P450 2R1|cytochrome P450, family 2, R1|vitamin D 25-hydroxylase 20121230 -9606 120237 DBX1 - - HGNC:33185|Ensembl:ENSG00000109851|HPRD:18721|Vega:OTTHUMG00000166043 11 11p15.1 developing brain homeobox 1 protein-coding DBX1 developing brain homeobox 1 O developing brain homeobox protein 1|homeobox protein DBX1 20121230 -9606 120318 RPS6P17 - RPS6_7_1168 HGNC:36669 11 11q22.2 ribosomal protein S6 pseudogene 17 pseudo RPS6P17 ribosomal protein S6 pseudogene 17 O - 20121230 -9606 120321 CSNK1A1P2 - - HGNC:30445 11 11q22.2 casein kinase 1, alpha 1 pseudogene 2 pseudo CSNK1A1P2 casein kinase 1, alpha 1 pseudogene 2 O - 20121230 -9606 120364 LOC120364 - - - 11 11q23.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 120376 C11orf93 - - HGNC:26978|Ensembl:ENSG00000214290|Vega:OTTHUMG00000166657 11 11q23.1 chromosome 11 open reading frame 93 protein-coding C11orf93 chromosome 11 open reading frame 93 O uncharacterized protein C11orf93 20121230 -9606 120379 PIH1D2 - - HGNC:25210|Ensembl:ENSG00000150773|HPRD:14021|Vega:OTTHUMG00000166925 11 11q23.1 PIH1 domain containing 2 protein-coding PIH1D2 PIH1 domain containing 2 O PIH1 domain-containing protein 2 20121230 -9606 120400 NXPE1 - FAM55A HGNC:28527|Ensembl:ENSG00000095110|HPRD:13315|Vega:OTTHUMG00000168284 11 11q23.2 neurexophilin and PC-esterase domain family, member 1 protein-coding NXPE1 neurexophilin and PC-esterase domain family, member 1 O NXPE family member 1|family with sequence similarity 55, member A|protein FAM55A 20121230 -9606 120406 NXPE2 - FAM55B HGNC:26331|Ensembl:ENSG00000204361|HPRD:08055|Vega:OTTHUMG00000168293 11 11q23.3 neurexophilin and PC-esterase domain family, member 2 protein-coding NXPE2 neurexophilin and PC-esterase domain family, member 2 O NXPE family member 2|family with sequence similarity 55, member B|protein FAM55B 20121230 -9606 120425 AMICA1 UNQ722/PRO1387 AMICA|CREA7-1|CREA7-4|Gm638|JAML HGNC:19084|MIM:609770|Ensembl:ENSG00000160593|HPRD:16482|Vega:OTTHUMG00000166965 11 11q23.3 adhesion molecule, interacts with CXADR antigen 1 protein-coding AMICA1 adhesion molecule, interacts with CXADR antigen 1 O adhesion molecule AMICA|adhesion molecule interacting with CXADR antigen 1|adhesion molecule that interacts with CXADR antigen 1|dendritic cell-specific protein CREA7-1|dendritic-cell specific protein CREA7-1|dendritic-cell specific protein CREA7-4|junctional adhesion molecule|junctional adhesion molecule-like 20121230 -9606 120449 LOC120449 - - - 11 11p11.2 C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 120526 DNAJC24 AC108456.1 DPH4|JJJ3|ZCSL3 HGNC:26979|MIM:611072|Ensembl:ENSG00000170946|HPRD:15705|Vega:OTTHUMG00000133712 11 11p13 DnaJ (Hsp40) homolog, subfamily C, member 24 protein-coding DNAJC24 DnaJ (Hsp40) homolog, subfamily C, member 24 O 1700030A21Rik|CSL-type zinc finger-containing protein 3|DPH4 homolog (JJJ3, S. cerevisiae)|DPH4, JJJ3 homolog|dnaJ homolog subfamily C member 24|zinc finger, CSL domain containing 3|zinc finger, CSL-type containing 3 20121230 -9606 120528 CYCSP25 - HC10|HCP25 HGNC:24399 11 11p13 cytochrome c, somatic pseudogene 25 pseudo CYCSP25 cytochrome c, somatic pseudogene 25 O - 20121230 -9606 120534 ARL14EP - ARF7EP|C11orf46|dJ299F11.1 HGNC:26798|MIM:612295|Ensembl:ENSG00000152219|HPRD:08796|Vega:OTTHUMG00000166154 11 11p14.1 ADP-ribosylation factor-like 14 effector protein protein-coding ARL14EP ADP-ribosylation factor-like 14 effector protein O ARF7 effector protein|ARL14 effector protein 20121230 -9606 120586 OR8I2 - OR11-170 HGNC:15310|Ensembl:ENSG00000172154|HPRD:15084|Vega:OTTHUMG00000166831 11 11q12.1 olfactory receptor, family 8, subfamily I, member 2 protein-coding OR8I2 olfactory receptor, family 8, subfamily I, member 2 O olfactory receptor 8I2|olfactory receptor OR11-170 20121230 -9606 120775 OR2D3 - OR11-89 HGNC:15146|Ensembl:ENSG00000178358|HPRD:17698|Vega:OTTHUMG00000165742 11 11p15.4 olfactory receptor, family 2, subfamily D, member 3 protein-coding OR2D3 olfactory receptor, family 2, subfamily D, member 3 O olfactory receptor 2D3|olfactory receptor OR11-89 20121230 -9606 120776 OR2D2 - OR11-610|OR2D1|hg27 HGNC:8244|MIM:608494|Ensembl:ENSG00000166368|HPRD:12247|Vega:OTTHUMG00000165741 11 11p15.4 olfactory receptor, family 2, subfamily D, member 2 protein-coding OR2D2 olfactory receptor, family 2, subfamily D, member 2 O HB2|olfactory receptor 11-610|olfactory receptor 2D1|olfactory receptor 2D2|olfactory receptor OR11-88|olfactory receptor, family 2, subfamily D, member 1 20121230 -9606 120787 OR52W1 - OR11-71|OR52W1P HGNC:15239|Ensembl:ENSG00000175485|HPRD:15025|Vega:OTTHUMG00000165378 11 11p15.4 olfactory receptor, family 52, subfamily W, member 1 protein-coding OR52W1 olfactory receptor, family 52, subfamily W, member 1 O olfactory receptor 52W1|olfactory receptor OR11-71|olfactory receptor, family 52, subfamily W, member 1 pseudogene 20121230 -9606 120793 OR56A4 - OR11-49 HGNC:14791|Ensembl:ENSG00000183389|HPRD:15026|Vega:OTTHUMG00000165376 11 11p15.4 olfactory receptor, family 56, subfamily A, member 4 protein-coding OR56A4 olfactory receptor, family 56, subfamily A, member 4 O olfactory receptor 56A4|olfactory receptor OR11-49 20121230 -9606 120796 OR56A1 - OR11-75 HGNC:14781|Ensembl:ENSG00000180934|HPRD:17746|Vega:OTTHUMG00000165377 11 11p15.4 olfactory receptor, family 56, subfamily A, member 1 protein-coding OR56A1 olfactory receptor, family 56, subfamily A, member 1 O olfactory receptor 56A1|olfactory receptor OR11-75 20121230 -9606 120824 TRIM51GP - - HGNC:43972 11 11p11.12 tripartite motif-containing 51G, pseudogene pseudo TRIM51GP tripartite motif-containing 51G, pseudogene O - 20121230 -9606 120863 DEPDC4 - DEP.4 HGNC:22952|Ensembl:ENSG00000166153|HPRD:13136|Vega:OTTHUMG00000170318 12 12q23.1 DEP domain containing 4 protein-coding DEPDC4 DEP domain containing 4 O DEP domain-containing protein 4 20121230 -9606 120872 RPL7P38 - RPL7_24_1261 HGNC:36731 12 12q21.31 ribosomal protein L7 pseudogene 38 pseudo RPL7P38 ribosomal protein L7 pseudogene 38 O - 20121230 -9606 120892 LRRK2 - AURA17|DARDARIN|PARK8|RIPK7|ROCO2 HGNC:18618|MIM:609007|Ensembl:ENSG00000188906|Vega:OTTHUMG00000059742 12 12q12 leucine-rich repeat kinase 2 protein-coding LRRK2 leucine-rich repeat kinase 2 O augmented in rheumatoid arthritis 17|leucine-rich repeat serine/threonine-protein kinase 2 20121230 -9606 120935 CCDC38 - - HGNC:26843|Ensembl:ENSG00000165972|HPRD:08268|Vega:OTTHUMG00000170352 12 12q23.1 coiled-coil domain containing 38 protein-coding CCDC38 coiled-coil domain containing 38 O coiled-coil domain-containing protein 38 20121230 -9606 120939 TMEM52B UNQ5927/PRO19821 C12orf59 HGNC:26438|Ensembl:ENSG00000165685|HPRD:08709|Vega:OTTHUMG00000168410 12 12p13.2 transmembrane protein 52B protein-coding TMEM52B transmembrane protein 52B O - 20121230 -9606 121006 FAM186A - - HGNC:26980|Ensembl:ENSG00000185958|Vega:OTTHUMG00000167889 12 12q13.12 family with sequence similarity 186, member A protein-coding FAM186A family with sequence similarity 186, member A O protein FAM186A 20121230 -9606 121014 LOC121014 - - - 12 12p11 tubulin, beta 2B class IIb pseudogene pseudo - - - - 20121230 -9606 121026 CYCSP30 - HCP30 HGNC:24405 12 12q21.32 cytochrome c, somatic pseudogene 30 pseudo CYCSP30 cytochrome c, somatic pseudogene 30 O - 20121230 -9606 121053 C12orf45 - - HGNC:28628|Ensembl:ENSG00000151131|HPRD:17556|Vega:OTTHUMG00000169822 12 12q23.3 chromosome 12 open reading frame 45 protein-coding C12orf45 chromosome 12 open reading frame 45 O uncharacterized protein C12orf45 20121230 -9606 121054 KRT18P20 - - HGNC:33388 12 12q23.3 keratin 18 pseudogene 20 pseudo KRT18P20 keratin 18 pseudogene 20 O - 20121230 -9606 121129 OR2AP1 - OR2AP1P HGNC:15335|Ensembl:ENSG00000179615|Vega:OTTHUMG00000169960 12 12q13.2 olfactory receptor, family 2, subfamily AP, member 1 protein-coding OR2AP1 olfactory receptor, family 2, subfamily AP, member 1 O olfactory receptor 2AP1|olfactory receptor OR12-9|olfactory receptor, family 2, subfamily AP, member 1 pseudogene|seven transmembrane helix receptor 20121230 -9606 121130 OR10P1 - OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 HGNC:15378|Ensembl:ENSG00000175398|HPRD:14895|Vega:OTTHUMG00000169961 12 12q13.2 olfactory receptor, family 10, subfamily P, member 1 protein-coding OR10P1 olfactory receptor, family 10, subfamily P, member 1 O olfactory receptor 10P1|olfactory receptor 10P2|olfactory receptor 10P3|olfactory receptor OR12-7|olfactory receptor, family 10, subfamily P, member 1 pseudogene|olfactory receptor, family 10, subfamily P, member 2 pseudogene|olfactory receptor, family 10, subfamily P, member 3 pseudogene|seven transmembrane helix receptor 20121230 -9606 121131 PSMB3P - - HGNC:20633 12 12q13.2 proteasome (prosome, macropain) subunit, beta type, 3 pseudogene pseudo PSMB3P proteasome (prosome, macropain) subunit, beta type, 3 pseudogene O - 20121230 -9606 121214 SDR9C7 - RDHS|SDR-O|SDRO HGNC:29958|MIM:609769|Ensembl:ENSG00000170426|HPRD:15235|Vega:OTTHUMG00000171004 12 12q13.3 short chain dehydrogenase/reductase family 9C, member 7 protein-coding SDR9C7 short chain dehydrogenase/reductase family 9C, member 7 O RDH-S|orphan short-chain dehydrogenase / reductase|orphan short-chain dehydrogenase/reductase|retinol dehydrogenase similar protein|short-chain dehydrogenase/reductase family 9C member 7 20121230 -9606 121227 LRIG3 UNQ287/PRO326/PRO335 LIG3 HGNC:30991|MIM:608870|Ensembl:ENSG00000139263|HPRD:08317|Vega:OTTHUMG00000169940 12 12q14.1 leucine-rich repeats and immunoglobulin-like domains 3 protein-coding LRIG3 leucine-rich repeats and immunoglobulin-like domains 3 O LIG-3|leucine-rich repeats and immunoglobulin-like domains protein 3 20121230 -9606 121256 TMEM132D - MOLT HGNC:29411|MIM:611257|Ensembl:ENSG00000151952|HPRD:13906|Vega:OTTHUMG00000168400 12 12q24.33 transmembrane protein 132D protein-coding TMEM132D transmembrane protein 132D O mature OL transmembrane protein|mature oligodendrocytes transmembrane protein 20121230 -9606 121260 SLC15A4 FP12591 PHT1|PTR4 HGNC:23090|Ensembl:ENSG00000139370|Vega:OTTHUMG00000168415 12 12q24.32 solute carrier family 15, member 4 protein-coding SLC15A4 solute carrier family 15, member 4 O hPHT1|peptide transporter 4|peptide-histidine transporter 4|peptide/histidine transporter 1|solute carrier family 15 member 4 20121230 -9606 121268 RHEBL1 - RHEBL1c HGNC:21166|Ensembl:ENSG00000167550|HPRD:15245|Vega:OTTHUMG00000170407 12 12q13.12 Ras homolog enriched in brain like 1 protein-coding RHEBL1 Ras homolog enriched in brain like 1 O GTPase RhebL1|Ras homolog enriched in brain like 1 c|ras homolog enriched in brain like-1 c|ras homolog enriched in brain-like protein 1|rheb-like protein 1|rheb2 20121230 -9606 121270 OR11M1P - - HGNC:15333 12 12q13.11 olfactory receptor, family 11, subfamily M, member 1 pseudogene pseudo OR11M1P olfactory receptor, family 11, subfamily M, member 1 pseudogene O - 20121230 -9606 121273 C12orf54 HSD29 HSD-29|HSD-30 HGNC:28553|Ensembl:ENSG00000177627|HPRD:14596|Vega:OTTHUMG00000170019 12 12q13.11 chromosome 12 open reading frame 54 protein-coding C12orf54 chromosome 12 open reading frame 54 O uncharacterized protein C12orf54 20121230 -9606 121274 ZNF641 - - HGNC:31834|MIM:613906|Ensembl:ENSG00000167528|HPRD:08711|Vega:OTTHUMG00000169906 12 12q13.11 zinc finger protein 641 protein-coding ZNF641 zinc finger protein 641 O - 20121230 -9606 121275 OR10AD1 - OR10AD1P|OR12-1 HGNC:14819|Ensembl:ENSG00000172640|HPRD:11812|HPRD:14884|Vega:OTTHUMG00000168027 12 12q13.11 olfactory receptor, family 10, subfamily AD, member 1 protein-coding OR10AD1 olfactory receptor, family 10, subfamily AD, member 1 O olfactory receptor 10AD1|olfactory receptor OR12-1|olfactory receptor, family 10, subfamily AD, member 1 pseudogene 20121230 -9606 121278 TPH2 - ADHD7|NTPH HGNC:20692|MIM:607478|Ensembl:ENSG00000139287|HPRD:09594|Vega:OTTHUMG00000169677 12 12q21.1 tryptophan hydroxylase 2 protein-coding TPH2 tryptophan hydroxylase 2 O neuronal tryptophan hydroxylase|tryptophan 5-hydroxylase 2|tryptophan 5-monooxygenase 2 20121230 -9606 121296 LOC121296 - - - 12 12q24.32 transmembrane protein 132B pseudogene pseudo - - - - 20121230 -9606 121328 GGTA2P - GGTA1P|GLYT2L|GLYT3|HGT2 HGNC:4254 12 12q14.3 glycoprotein, alpha-galactosyltransferase 2, pseudogene pseudo GGTA2P glycoprotein, alpha-galactosyltransferase 2, pseudogene O - 20121230 -9606 121340 SP7 - OI11|OI12|OSX|osterix HGNC:17321|MIM:606633|Ensembl:ENSG00000170374|HPRD:05971|Vega:OTTHUMG00000170031 12 12q13.13 Sp7 transcription factor protein-coding SP7 Sp7 transcription factor O transcription factor Sp7|zinc finger protein osterix 20121230 -9606 121355 GTSF1 - FAM112B HGNC:26565|Ensembl:ENSG00000170627|HPRD:08150|Vega:OTTHUMG00000169842 12 12q13.13 gametocyte specific factor 1 protein-coding GTSF1 gametocyte specific factor 1 O family with sequence similarity 112, member B|gametocyte-specific factor 1 20121230 -9606 121360 OR9K1P - OR12-4 HGNC:15338 12 12q13.2 olfactory receptor, family 9, subfamily K, member 1 pseudogene pseudo OR9K1P olfactory receptor, family 9, subfamily K, member 1 pseudogene O - 20121230 -9606 121364 OR10A7 - OR12-6 HGNC:15329|Ensembl:ENSG00000179919|HPRD:14883|Vega:OTTHUMG00000169860 12 12q13.2 olfactory receptor, family 10, subfamily A, member 7 protein-coding OR10A7 olfactory receptor, family 10, subfamily A, member 7 O olfactory receptor 10A7|olfactory receptor OR12-6 20121230 -9606 121391 KRT74 - HTSS2|K6IRS4|KRT5C|KRT6IRS4 HGNC:28929|MIM:608248|Ensembl:ENSG00000170484|HPRD:10504|Vega:OTTHUMG00000169658 12 12q13.13 keratin 74 protein-coding KRT74 keratin 74 O CK-74|K5C|K74|cytokeratin-74|keratin 5c|keratin 6 irs4|keratin, type II cytoskeletal 74|keratin-5c|keratin-74|type II inner root sheath-specific keratin-K6irs4|type-II keratin Kb37 20121230 -9606 121441 NEDD1 - GCP-WD|TUBGCP7 HGNC:7723|MIM:600372|Ensembl:ENSG00000139350|HPRD:02655|Vega:OTTHUMG00000170604 12 12q23.1 neural precursor cell expressed, developmentally down-regulated 1 protein-coding NEDD1 neural precursor cell expressed, developmentally down-regulated 1 O NEDD-1|neural precursor cell expressed developmentally down-regulated protein 1|protein NEDD1 20121230 -9606 121456 SLC9A7P1 - - HGNC:32679 12 12q23.1 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 pseudo SLC9A7P1 solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 O - 20121230 -9606 121457 IKBIP - IKIP HGNC:26430|MIM:609861|Ensembl:ENSG00000166130|HPRD:08092|Vega:OTTHUMG00000170213 12 12q23.1 IKBKB interacting protein protein-coding IKBIP IKBKB interacting protein O I kappa B kinase interacting protein|IKBKB-interacting protein|IKK interacting protein|IKK-interacting protein|i kappa-B kinase-interacting protein|inhibitor of nuclear factor kappa-B kinase-interacting protein 20121230 -9606 121498 LDHAL6CP - LDH6C HGNC:39423 12 12q14.2 lactate dehydrogenase A-like 6C, pseudogene pseudo LDHAL6CP lactate dehydrogenase A-like 6C, pseudogene O - 20121230 -9606 121504 HIST4H4 - H4/p HGNC:20510|Ensembl:ENSG00000197837|HPRD:13662|Vega:OTTHUMG00000168735 12 12p12.3 histone cluster 4, H4 protein-coding HIST4H4 histone cluster 4, H4 O histone 4, H4|histone H4 20121230 -9606 121506 ERP27 UNQ781/PRO1575 C12orf46|PDIA8 HGNC:26495|MIM:610642|Ensembl:ENSG00000139055|HPRD:08723|Vega:OTTHUMG00000168741 12 12p12.3 endoplasmic reticulum protein 27 protein-coding ERP27 endoplasmic reticulum protein 27 O ER protein 27|endoplasmic reticulum protein 27 kDa|endoplasmic reticulum resident protein 27|protein disulfide isomerase family A, member 8 20121230 -9606 121512 FGD4 - CMT4H|FRABP|ZFYVE6 HGNC:19125|MIM:611104|Ensembl:ENSG00000139132|HPRD:16891|Vega:OTTHUMG00000137374 12 12p11.21 FYVE, RhoGEF and PH domain containing 4 protein-coding FGD4 FYVE, RhoGEF and PH domain containing 4 O FGD1 family, member 4|FGD1-related F-actin-binding protein|FYVE, RhoGEF and PH domain-containing protein 4|actin-filament binding protein frabin|zinc finger FYVE domain-containing protein 6 20121230 -9606 121520 GOT2P4 - GOT2L4 HGNC:22936 12 12p12.3 glutamic-oxaloacetic transaminase 2 pseudogene 4 pseudo GOT2P4 glutamic-oxaloacetic transaminase 2 pseudogene 4 O - 20121230 -9606 121536 AEBP2 - - HGNC:24051|Ensembl:ENSG00000139154|HPRD:16477|Vega:OTTHUMG00000168906 12 12p12.3 AE binding protein 2 protein-coding AEBP2 AE binding protein 2 O AE(adipocyte enhancer)-binding protein 2|AE-binding protein 2|adipocyte enhancer-binding protein 2|zinc finger protein AEBP2 20121230 -9606 121549 ASCL4 - HASH4|bHLHa44 HGNC:24311|MIM:609155|Ensembl:ENSG00000187855|HPRD:12374|Vega:OTTHUMG00000156964 12 12q23.3 achaete-scute complex homolog 4 (Drosophila) protein-coding ASCL4 achaete-scute complex homolog 4 (Drosophila) O ASH-4|achaete-scute complex-like 4|achaete-scute homolog 4|achaete-scute-like protein 4|class A basic helix-loop-helix protein 44|class II bHLH protein ASCL4 20121230 -9606 121551 BTBD11 - - HGNC:23844|Ensembl:ENSG00000151136|HPRD:12536|Vega:OTTHUMG00000150413 12 12q23.3 BTB (POZ) domain containing 11 protein-coding BTBD11 BTB (POZ) domain containing 11 O ANK-repeat BTB domain containing protein|BTB/POZ domain-containing protein 11|ankyrin repeat and BTB/POZ domain-containing protein BTBD11 20121230 -9606 121599 SPIC - SPI-C HGNC:29549|MIM:612568|Ensembl:ENSG00000166211|HPRD:15438|Vega:OTTHUMG00000170273 12 12q23.2 Spi-C transcription factor (Spi-1/PU.1 related) protein-coding SPIC Spi-C transcription factor (Spi-1/PU.1 related) O transcription factor Spi-C 20121230 -9606 121601 ANO4 - TMEM16D HGNC:23837|MIM:610111|Ensembl:ENSG00000151572|HPRD:15527|Vega:OTTHUMG00000170465 12 12q23.1 anoctamin 4 protein-coding ANO4 anoctamin 4 O anoctamin-4|transmembrane protein 16D 20121230 -9606 121642 ALKBH2 - ABH2 HGNC:32487|MIM:610602|Ensembl:ENSG00000189046|HPRD:14712|Vega:OTTHUMG00000169246 12 12q24.11 alkB, alkylation repair homolog 2 (E. coli) protein-coding ALKBH2 alkB, alkylation repair homolog 2 (E. coli) O 2OG-Fe(II) oxy DC1|DNA oxidative demethylase ALKBH2|alkylated DNA repair protein alkB homolog 2|alpha-ketoglutarate-dependent dioxygenase alkB homolog 2|oxy DC1 20121230 -9606 121643 FOXN4 - - HGNC:21399|MIM:609429|Ensembl:ENSG00000139445|HPRD:13550|Vega:OTTHUMG00000152868 12 12q24.11 forkhead box N4 protein-coding FOXN4 forkhead box N4 O forkhead box protein N4|forkhead/winged helix transcription factor FOXN4 20121230 -9606 121665 SPPL3 UNQ1887 IMP2|MDHV1887|PRO4332|PSH1|PSL4 HGNC:30424|MIM:608240|Ensembl:ENSG00000157837|HPRD:09744|Vega:OTTHUMG00000169232 12 12q24.31 signal peptide peptidase like 3 protein-coding SPPL3 signal peptide peptidase like 3 O SPP-like 3|intramembrane protease 2|presenilin homologous protein 1|presenilin-like protein 4|signal peptide peptidase-like 3 20121230 -9606 121727 PEX12P1 RP11-388D4.1 - HGNC:39678 13 13q31.3 peroxisomal biogenesis factor 12 pseudogene 1 pseudo PEX12P1 peroxisomal biogenesis factor 12 pseudogene 1 O - 20121230 -9606 121775 CHDM - - MIM:215400 7 7q33 Chordoma unknown - - - - 20121018 -9606 121793 TEX29 - C13orf16|bA474D23.1 HGNC:20370|Ensembl:ENSG00000153495|HPRD:14603|Vega:OTTHUMG00000017358 13 13q34 testis expressed 29 protein-coding TEX29 testis expressed 29 O testis-expressed sequence 29 protein 20121230 -9606 121838 LINC00284 - NCRNA00284 HGNC:26981 13 13q14.11 long intergenic non-protein coding RNA 284 miscRNA LINC00284 long intergenic non-protein coding RNA 284 O - 20121230 -9606 121906 PSMA6P4 - - HGNC:39609 13 13q32.1 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 4 pseudo PSMA6P4 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 4 O - 20121230 -9606 121916 CYCSP35 - HC8|HCP35 HGNC:24409 13 13q32.2 cytochrome c, somatic pseudogene 35 pseudo CYCSP35 cytochrome c, somatic pseudogene 35 O - 20121230 -9606 121952 METTL21EP - METTL21CP1 HGNC:41948 13 13q33.1 methyltransferase like 21E, pseudogene pseudo METTL21EP methyltransferase like 21E, pseudogene O - 20121230 -9606 121981 PPIAP26 RP11-431O22.2 - HGNC:39271 13 13q14.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene 26 pseudo PPIAP26 peptidylprolyl isomerase A (cyclophilin A) pseudogene 26 O - 20121230 -9606 122011 CSNK1A1L - CK1 HGNC:20289|Ensembl:ENSG00000180138|HPRD:13095|Vega:OTTHUMG00000016748 13 13q13.3 casein kinase 1, alpha 1-like protein-coding CSNK1A1L casein kinase 1, alpha 1-like O CKI-alpha-like|casein kinase I alpha S-like|casein kinase I isoform alpha-like 20121230 -9606 122038 TOMM22P3 hCG_1643176 - HGNC:38739 13 13q13.1 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 3 pseudo TOMM22P3 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 3 O - 20121230 -9606 122042 RXFP2 - GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 HGNC:17318|MIM:606655|Ensembl:ENSG00000133105|HPRD:05976|Vega:OTTHUMG00000016690 13 13q13.1 relaxin/insulin-like family peptide receptor 2 protein-coding RXFP2 relaxin/insulin-like family peptide receptor 2 O G protein coupled receptor affecting testicular descent|G-protein coupled receptor 106|G-protein coupled receptor affecting testicular descent|leucine-rich repeat-containing G protein-coupled receptor 8|leucine-rich repeat-containing G-protein coupled receptor 8|relaxin family peptide receptor 2|relaxin receptor 2 20121230 -9606 122046 TEX26 - C13orf26 HGNC:28622|Ensembl:ENSG00000175664|HPRD:17551|Vega:OTTHUMG00000016682 13 13q12.3 testis expressed 26 protein-coding TEX26 testis expressed 26 O testis-expressed sequence 26 protein 20121230 -9606 122060 SLAIN1 RP11-188A23.1 C13orf32 HGNC:26387|MIM:610491|Ensembl:ENSG00000139737|HPRD:13400|Vega:OTTHUMG00000017110 13 13q22.3 SLAIN motif family, member 1 protein-coding SLAIN1 SLAIN motif family, member 1 O SLAIN motif-containing protein 1 20121230 -9606 122145 RIOK3P1 - - HGNC:39714 13 13q22.2 RIO kinase 3 pseudogene 1 pseudo RIOK3P1 RIO kinase 3 pseudogene 1 O - 20121230 -9606 122183 PRR20A - PRR20 HGNC:24754|Ensembl:ENSG00000204919|HPRD:13445|Vega:OTTHUMG00000160602 13 13q21.1 proline rich 20A protein-coding PRR20A proline rich 20A O proline rich 20|proline-rich protein 20|proline-rich protein 20A 20121230 -9606 122199 LGMNP1 - LGMN2P HGNC:23079 13 13q21.31 legumain pseudogene 1 pseudo LGMNP1 legumain pseudogene 1 O - 20121230 -9606 122258 SPACA7 RP11-480K16.1 C13orf28 HGNC:29575|Ensembl:ENSG00000153498|HPRD:14022|Vega:OTTHUMG00000017365 13 13q34 sperm acrosome associated 7 protein-coding SPACA7 sperm acrosome associated 7 O protein SPACA7|sperm acrosome-associated protein 7 20121230 -9606 122335 PPIAP24 RP11-282A11.1 - HGNC:39269 13 13q33.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene 24 pseudo PPIAP24 peptidylprolyl isomerase A (cyclophilin A) pseudogene 24 O - 20121230 -9606 122402 TDRD9 - C14orf75|HIG-1|NET54 HGNC:20122|Ensembl:ENSG00000156414|HPRD:15484|Vega:OTTHUMG00000152876 14 14q32.33 tudor domain containing 9 protein-coding TDRD9 tudor domain containing 9 O hypoxia-inducible HIG-1|putative ATP-dependent RNA helicase TDRD9|tudor domain-containing protein 9 20121230 -9606 122409 RPL21P12 - - HGNC:19810 14 14q32.32 ribosomal protein L21 pseudogene 12 pseudo RPL21P12 ribosomal protein L21 pseudogene 12 O - 20121230 -9606 122416 ANKRD9 - - HGNC:20096|Ensembl:ENSG00000156381|HPRD:12467|Vega:OTTHUMG00000171777 14 14q32.31 ankyrin repeat domain 9 protein-coding ANKRD9 ankyrin repeat domain 9 O ankyrin repeat domain-containing protein 9 20121230 -9606 122449 RPS29P1 - RPS29_5_1384 HGNC:19783 14 14q24.1 ribosomal protein S29 pseudogene 1 pseudo RPS29P1 ribosomal protein S29 pseudogene 1 O - 20121230 -9606 122481 AK7 - - HGNC:20091|Ensembl:ENSG00000140057|HPRD:10640|Vega:OTTHUMG00000171421 14 14q32.2 adenylate kinase 7 protein-coding AK7 adenylate kinase 7 O putative adenylate kinase 7 20121230 -9606 122509 IFI27L1 - FAM14B|ISG12C HGNC:19754|MIM:611320|Ensembl:ENSG00000165948|HPRD:13292|Vega:OTTHUMG00000171302 14 14q32.12 interferon, alpha-inducible protein 27-like 1 protein-coding IFI27L1 interferon, alpha-inducible protein 27-like 1 O ISG12(c) protein|family with sequence similarity 14, member B|interferon alpha-inducible protein 27-like protein 1|interferon-stimulated gene 12c protein 20121230 -9606 122525 C14orf28 - DRIP-1|DRIP1|c14_5270 HGNC:19834|Ensembl:ENSG00000179476|HPRD:18544|Vega:OTTHUMG00000170722 14 14q21.2 chromosome 14 open reading frame 28 protein-coding C14orf28 chromosome 14 open reading frame 28 O dopamine receptor interacting protein 1|dopamine receptor-interacting protein 1|uncharacterized protein C14orf28 20121230 -9606 122552 PPIAP4 - - HGNC:19935 14 14q21.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 4 pseudo PPIAP4 peptidylprolyl isomerase A (cyclophilin A) pseudogene 4 O - 20121230 -9606 122553 TRAPPC6B - TPC6 HGNC:23066|MIM:610397|Ensembl:ENSG00000182400|HPRD:18221|Vega:OTTHUMG00000140259 14 14q21.1 trafficking protein particle complex 6B protein-coding TRAPPC6B trafficking protein particle complex 6B O trafficking protein particle complex subunit 6B 20121230 -9606 122589 RPLP0P3 - RPLP0_4_1355 HGNC:23558 14 14q13.2 ribosomal protein, large, P0 pseudogene 3 pseudo RPLP0P3 ribosomal protein, large, P0 pseudogene 3 O - 20121230 -9606 122592 KRT18P6 - - HGNC:20280 14 14q13.2 keratin 18 pseudogene 6 pseudo KRT18P6 keratin 18 pseudogene 6 O - 20121230 -9606 122616 C14orf79 - - HGNC:20126|Ensembl:ENSG00000140104|HPRD:12656|Vega:OTTHUMG00000170474 14 14q32.33 chromosome 14 open reading frame 79 protein-coding C14orf79 chromosome 14 open reading frame 79 O uncharacterized protein C14orf79 20121230 -9606 122618 PLD4 UNQ2488/PRO5775 C14orf175 HGNC:23792|Ensembl:ENSG00000166428|HPRD:11230|Vega:OTTHUMG00000144167 14 14q32.33 phospholipase D family, member 4 protein-coding PLD4 phospholipase D family, member 4 O PLD 4|choline phosphatase 4|phosphatidylcholine-hydrolyzing phospholipase D4|phospholipase D4 20121230 -9606 122622 ADSSL1 - - HGNC:20093|MIM:612498|Ensembl:ENSG00000185100|HPRD:12433|Vega:OTTHUMG00000170818 14 14q32.33 adenylosuccinate synthase like 1 protein-coding ADSSL1 adenylosuccinate synthase like 1 O AMPSase 1|IMP--aspartate ligase 1|M-type adenylosuccinate synthetase|adSS 1|adenylosuccinate synthetase isozyme 1|adenylosuccinate synthetase, basic isozyme|adenylosuccinate synthetase, muscle isozyme 20121230 -9606 122631 CEND1P1 - - HGNC:43674 14 14q32 cell cycle exit and neuronal differentiation 1 pseudogene 1 pseudo CEND1P1 cell cycle exit and neuronal differentiation 1 pseudogene 1 O - 20121230 -9606 122651 RNASE11 UNQ5832/PRO19669 C14orf6 HGNC:19269|Ensembl:ENSG00000173464|HPRD:15257|Vega:OTTHUMG00000170990 14 14q11.2 ribonuclease, RNase A family, 11 (non-active) protein-coding RNASE11 ribonuclease, RNase A family, 11 (non-active) O RNase 11|probable ribonuclease 11|ribonuclease 11 20121230 -9606 122664 TPPP2 - C14orf8|P18|p25beta HGNC:19293|Ensembl:ENSG00000179636|HPRD:12657|Vega:OTTHUMG00000171071 14 14q11.2 tubulin polymerization-promoting protein family member 2 protein-coding TPPP2 tubulin polymerization-promoting protein family member 2 O TPPP/p18|protein p25-beta 20121230 -9606 122665 RNASE8 - - HGNC:19277|MIM:612485|Ensembl:ENSG00000173431|HPRD:17982|Vega:OTTHUMG00000029645 14 14q11.2 ribonuclease, RNase A family, 8 protein-coding RNASE8 ribonuclease, RNase A family, 8 O RNase 8, placental|ribonuclease 8 20121230 -9606 122704 MRPL52 - - HGNC:16655|MIM:611856|Ensembl:ENSG00000172590|HPRD:14770|Vega:OTTHUMG00000028703 14 14q11.2 mitochondrial ribosomal protein L52 protein-coding MRPL52 mitochondrial ribosomal protein L52 O 39S ribosomal protein L52, mitochondrial|L52mt|MRP-L52 20121230 -9606 122706 PSMB11 - BETA5T HGNC:31963|MIM:611137|Ensembl:ENSG00000222028|Vega:OTTHUMG00000170279 14 14q11.2 proteasome (prosome, macropain) subunit, beta type, 11 protein-coding PSMB11 proteasome (prosome, macropain) subunit, beta type, 11 O proteasome subunit beta 5T|proteasome subunit beta type-11|proteasome subunit beta-5t 20121230 -9606 122740 OR4K14 - OR14-18|OR14-22 HGNC:15352|Ensembl:ENSG00000169484|HPRD:14977|Vega:OTTHUMG00000170780 14 14q11.2 olfactory receptor, family 4, subfamily K, member 14 protein-coding OR4K14 olfactory receptor, family 4, subfamily K, member 14 O olfactory receptor 4K14|olfactory receptor OR14-18 pseudogene|olfactory receptor OR14-22 20121230 -9606 122742 OR4L1 - OR14-28|OR4L2P HGNC:15356|Ensembl:ENSG00000176246|HPRD:14982|Vega:OTTHUMG00000169492 14 14q11.2 olfactory receptor, family 4, subfamily L, member 1 protein-coding OR4L1 olfactory receptor, family 4, subfamily L, member 1 O olfactory receptor 4L1|olfactory receptor 4L2|olfactory receptor OR14-28|olfactory receptor, family 4, subfamily L, member 2 pseudogene 20121230 -9606 122748 OR11H6 - - HGNC:15349|Ensembl:ENSG00000176219|HPRD:14903|Vega:OTTHUMG00000170850 14 14q11.2 olfactory receptor, family 11, subfamily H, member 6 protein-coding OR11H6 olfactory receptor, family 11, subfamily H, member 6 O olfactory receptor 11H6|olfactory receptor OR14-35 20121230 -9606 122769 LRR1 - 4-1BBLRR|LRR-1|PPIL5 HGNC:19742|MIM:609193|Ensembl:ENSG00000165501|HPRD:15164|Vega:OTTHUMG00000140273 14 14q21.3 leucine rich repeat protein 1 protein-coding LRR1 leucine rich repeat protein 1 O 4-1BB-mediated signaling molecule|4-1BB-mediated-signaling molecule|LRR-repeat protein 1|cyclophilin-like 5|leucine-rich repeat protein 1|peptidylprolyl isomerase (cyclophilin)-like 5|peptidylprolyl isomerase-like 5 20121230 -9606 122773 KLHDC1 MSTP025 MST025 HGNC:19836|MIM:611281|Ensembl:ENSG00000197776|HPRD:13921|Vega:OTTHUMG00000140295 14 14q21.3 kelch domain containing 1 protein-coding KLHDC1 kelch domain containing 1 O kelch domain-containing protein 1 20121230 -9606 122786 FRMD6 - C14orf31|EX1|Willin|c14_5320 HGNC:19839|MIM:614555|Ensembl:ENSG00000139926|HPRD:12646|Vega:OTTHUMG00000140294 14 14q22.1 FERM domain containing 6 protein-coding FRMD6 FERM domain containing 6 O 4.1 ezrin radixin moesin (FERM)-containing protein|FERM domain-containing protein 6|expanded homolog 20121230 -9606 122809 SOCS4 - SOCS7 HGNC:19392|Ensembl:ENSG00000180008|HPRD:18084|Vega:OTTHUMG00000140311 14 14q22.1 suppressor of cytokine signaling 4 protein-coding SOCS4 suppressor of cytokine signaling 4 O SH2 domain containing SOCS box protein|SOCS-4|SOCS-7|suppressor of cytokine signaling 7 20121230 -9606 122830 NAA30 - C14orf35|MAK3|Mak3p|NAT12 HGNC:19844|Ensembl:ENSG00000139977|HPRD:16619|Vega:OTTHUMG00000171311 14 14q22.3 N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit O N-acetyltransferase 12 (GCN5-related, putative)|N-acetyltransferase MAK3 homolog|N-alpha-acetyltransferase 30|N-alpha-acetyltransferase 30, NatC catalytic subunit|natC catalytic subunit|putative N-acetyltransferase 20121230 -9606 122837 UBA52P3 - RPL40_5_1373 HGNC:20056 14 14q23.1 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3 pseudo UBA52P3 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3 O - 20121230 -9606 122842 PPIAP5 - - HGNC:20027 14 14q23.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 5 pseudo PPIAP5 peptidylprolyl isomerase A (cyclophilin A) pseudogene 5 O - 20121230 -9606 122867 COX4I1P1 - COX4L1|COX4P1 HGNC:2266 14 14q23.2 cytochrome c oxidase subunit IV isoform 1 pseudogene 1 pseudo COX4I1P1 cytochrome c oxidase subunit IV isoform 1 pseudogene 1 O - 20121230 -9606 122876 GPHB5 - B5|GPB5|ZLUT1 HGNC:18055|MIM:609652|HPRD:17053 14 14q23.2 glycoprotein hormone beta 5 protein-coding GPHB5 glycoprotein hormone beta 5 O glycoprotein beta 5|glycoprotein hormone beta subunit|glycoprotein hormone beta-5|thyrostimulin subunit beta 20121230 -9606 122888 PTBP1P - HNRNPIP HGNC:20030 14 14q23.3 polypyrimidine tract binding protein 1 pseudogene pseudo PTBP1P polypyrimidine tract binding protein 1 pseudogene O - 20121230 -9606 122942 FRDAP - - HGNC:20012 14 14q24.3 Friedreich ataxia pseudogene pseudo FRDAP Friedreich ataxia pseudogene O - 20121230 -9606 122945 NOXRED1 - C14orf148 HGNC:20487|Ensembl:ENSG00000165555|HPRD:08140|Vega:OTTHUMG00000171554 14 14q24.3 NADP-dependent oxidoreductase domain containing 1 protein-coding NOXRED1 NADP-dependent oxidoreductase domain containing 1 O NADP-dependent oxidoreductase domain-containing protein 1|pyrroline-5-carboxylate reductase-like protein C14orf148 20121230 -9606 122950 CYCSP1 - HC5|HCP36 HGNC:20095 14 14q24.3 cytochrome c, somatic pseudogene 1 pseudo CYCSP1 cytochrome c, somatic pseudogene 1 O - 20121230 -9606 122953 JDP2 - JUNDM2 HGNC:17546|MIM:608657|Ensembl:ENSG00000140044|HPRD:16360|Vega:OTTHUMG00000171869 14 14q24.3 Jun dimerization protein 2 protein-coding JDP2 Jun dimerization protein 2 O jun dimerization protein 2|progesterone receptor co-activator 20121230 -9606 122961 ISCA2 - HBLD1|ISA2|c14_5557 HGNC:19857|Ensembl:ENSG00000165898|HPRD:17090|Vega:OTTHUMG00000171214 14 14q24.3 iron-sulfur cluster assembly 2 homolog (S. cerevisiae) protein-coding ISCA2 iron-sulfur cluster assembly 2 homolog (S. cerevisiae) O HESB-like domain-containing protein 1|iron-sulfur cluster assembly 2 homolog, mitochondrial 20121230 -9606 122970 ACOT4 - PTE-Ib|PTE1B|PTE2B HGNC:19748|MIM:614314|Ensembl:ENSG00000177465|HPRD:17928|Vega:OTTHUMG00000169485 14 14q24.3 acyl-CoA thioesterase 4 protein-coding ACOT4 acyl-CoA thioesterase 4 O PTE-2b|acyl-coenzyme A thioesterase 4|peroxisomal acyl coenzyme A thioester hydrolase Ib|peroxisomal acyl-CoA thioesterase 2B|peroxisomal long-chain acyl-CoA thioesterase Ib 20121230 -9606 123016 TTC8 - BBS8|RP51 HGNC:20087|MIM:608132|Ensembl:ENSG00000165533|Vega:OTTHUMG00000170884 14 14q31.3 tetratricopeptide repeat domain 8 protein-coding TTC8 tetratricopeptide repeat domain 8 O Bardet-Biedl syndrome type 8|TPR repeat protein 8|bardet-Biedl syndrome 8 protein|tetratricopeptide repeat protein 8 20121230 -9606 123036 TC2N - C14orf47|C2CD1|MTAC2D1|Tac2-N HGNC:19859|Ensembl:ENSG00000165929|HPRD:11375|Vega:OTTHUMG00000171121 14 14q32.12 tandem C2 domains, nuclear protein-coding TC2N tandem C2 domains, nuclear O C2 calcium-dependent domain containing 1|membrane targeting (tandem) C2 domain containing 1|membrane targeting tandem C2 domain-containing protein 1|tandem C2 domains nuclear protein|tandem C2 protein in nucleus 20121230 -9606 123041 SLC24A4 - NCKX4|SHEP6|SLC24A2 HGNC:10978|MIM:609840|Ensembl:ENSG00000140090|HPRD:15353|Vega:OTTHUMG00000167589 14 14q32.12 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 protein-coding SLC24A4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 O Na(+)/K(+)/Ca(2+)-exchange protein 4|sodium/potassium/calcium exchanger 4 20121230 -9606 123096 SLC25A29 - C14orf69|CACL HGNC:20116|Ensembl:ENSG00000197119|HPRD:15360|Vega:OTTHUMG00000171569 14 14q32.2 solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 protein-coding SLC25A29 solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 O carnitine-acylcarnitine translocase like|mitochondrial carnitine/acylcarnitine carrier protein CACL|solute carrier family 25, member 29 20121230 -9606 123099 DEGS2 - C14orf66|DES2|FADS8 HGNC:20113|MIM:610862|Ensembl:ENSG00000168350|HPRD:13134|Vega:OTTHUMG00000171537 14 14q32.2 delta(4)-desaturase, sphingolipid 2 protein-coding DEGS2 delta(4)-desaturase, sphingolipid 2 O degenerative spermatocyte homolog 2, lipid desaturase|sphingolipid C4-hydroxylase/delta 4-desaturase|sphingolipid delta 4 desaturase/C-4 hydroxylase|sphingolipid delta(4)-desaturase 2|sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 20121230 -9606 123103 KLHL33 - - HGNC:31952|Ensembl:ENSG00000185271|Vega:OTTHUMG00000170982 14 14q11.2 kelch-like 33 (Drosophila) protein-coding KLHL33 kelch-like 33 (Drosophila) O kelch-like protein 33 20121230 -9606 123169 LEO1 - RDL HGNC:30401|MIM:610507|Ensembl:ENSG00000166477|HPRD:11231|Vega:OTTHUMG00000131843 15 15q21.2 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein-coding LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) O RNA polymerase-associated protein LEO1|replicative senescence down-regulated leo1-like protein 20121230 -9606 123207 C15orf40 - - HGNC:28443|Ensembl:ENSG00000169609|HPRD:14538|Vega:OTTHUMG00000160473 15 15q25.2 chromosome 15 open reading frame 40 protein-coding C15orf40 chromosome 15 open reading frame 40 O UPF0235 protein C15orf40 20121230 -9606 123228 SENP8 FKSG8 DEN1|NEDP1|PRSC2 HGNC:22992|MIM:608659|Ensembl:ENSG00000166192|HPRD:09784|Vega:OTTHUMG00000133441 15 15q23 SUMO/sentrin specific peptidase family member 8 protein-coding SENP8 SUMO/sentrin specific peptidase family member 8 O NEDD8 specific-protease cysteine 2|NEDD8-specific protease 1|SUMO sentrin specific protease family member 8|deneddylase 1|deneddylase-1|protease, cysteine 2|sentrin-specific protease 8 20121230 -9606 123263 MTFMT - COXPD15|FMT1 HGNC:29666|MIM:611766|Ensembl:ENSG00000103707|HPRD:14799|Vega:OTTHUMG00000172371 15 15q22.31 mitochondrial methionyl-tRNA formyltransferase protein-coding MTFMT mitochondrial methionyl-tRNA formyltransferase O methionyl-tRNA formyltransferase, mitochondrial 20121230 -9606 123264 SLC51B - OSTB|OSTBETA HGNC:29956|MIM:612085|Ensembl:ENSG00000186198|HPRD:17811|Vega:OTTHUMG00000133116 15 15q22.31 solute carrier family 51, beta subunit protein-coding SLC51B solute carrier family 51, beta subunit O OST-beta|organic solute transporter beta subunit|organic solute transporter subunit beta|solute carrier family 51 subunit beta 20121230 -9606 123283 TARSL2 - - HGNC:24728|Ensembl:ENSG00000185418|HPRD:15469|Vega:OTTHUMG00000149869 15 15q26.3 threonyl-tRNA synthetase-like 2 protein-coding TARSL2 threonyl-tRNA synthetase-like 2 O probable threonine--tRNA ligase 2, cytoplasmic|probable threonyl-tRNA synthetase 2, cytoplasmic|thrRS|threonine--tRNA ligase|threonyl-tRNA synthetase|threonyl-tRNA synthetase-like protein 2 20121230 -9606 123346 HIGD2B - HIGD2BP HGNC:26984 15 15q24.1 HIG1 hypoxia inducible domain family, member 2B pseudo HIGD2B HIG1 hypoxia inducible domain family, member 2B O - 20121230 -9606 123355 LRRC28 UNQ436/PRO867 - HGNC:28355|Ensembl:ENSG00000168904|HPRD:14316|Vega:OTTHUMG00000149854 15 15q26.3 leucine rich repeat containing 28 protein-coding LRRC28 leucine rich repeat containing 28 O leucine-rich repeat-containing protein 28 20121230 -9606 123591 C15orf27 - - HGNC:26763|Ensembl:ENSG00000169758|HPRD:08235|Vega:OTTHUMG00000142918 15 15q24.2 chromosome 15 open reading frame 27 protein-coding C15orf27 chromosome 15 open reading frame 27 O transmembrane protein C15orf27 20121230 -9606 123606 NIPA1 - FSP3|SPG6 HGNC:17043|MIM:608145|Ensembl:ENSG00000170113|HPRD:10487|Vega:OTTHUMG00000129099 15 15q11.2 non imprinted in Prader-Willi/Angelman syndrome 1 protein-coding NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 O magnesium transporter NIPA1|non-imprinted in Prader-Willi/Angelman syndrome 1|non-imprinted in Prader-Willi/Angelman syndrome region protein 1|spastic paraplegia 6 protein 20121230 -9606 123624 AGBL1 - - HGNC:26504|Ensembl:ENSG00000166748|HPRD:07115|Vega:OTTHUMG00000149978 15 15q25.3 ATP/GTP binding protein-like 1 protein-coding AGBL1 ATP/GTP binding protein-like 1 O ATP/GTP-binding protein-like 1|cytosolic carboxypeptidase 4 20121230 -9606 123688 AGPHD1 - - HGNC:34403|MIM:614681|Ensembl:ENSG00000188266|HPRD:12515|Vega:OTTHUMG00000177204 15 15q25.1 aminoglycoside phosphotransferase domain containing 1 protein-coding AGPHD1 aminoglycoside phosphotransferase domain containing 1 O 5-hydroxy-L-lysine kinase|5-hydroxylysine kinase|aminoglycoside phosphotransferase domain-containing protein 1|hydroxylysine kinase 20121230 -9606 123720 WHAMM - WHDC1 HGNC:30493|MIM:612393|Ensembl:ENSG00000156232|Vega:OTTHUMG00000172422 15 15q25.2 WAS protein homolog associated with actin, golgi membranes and microtubules protein-coding WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules O WAS protein homology region 2 domain containing 1|WAS protein homology region 2 domain-containing protein 1|WASP homolog-associated protein with actin, membranes and microtubules|WH2 domain-containing protein 1 20121230 -9606 123722 FSD2 - RP11-127F21|SPRYD1 HGNC:18024|Ensembl:ENSG00000186628|HPRD:17291|Vega:OTTHUMG00000172400 15 15q25.2 fibronectin type III and SPRY domain containing 2 protein-coding FSD2 fibronectin type III and SPRY domain containing 2 O SPRY domain containing 1|SPRY domain-containing protein 1|fibronectin type III and SPRY domain-containing protein 2 20121230 -9606 123745 PLA2G4E - - HGNC:24791|Ensembl:ENSG00000188089|HPRD:13510|Vega:OTTHUMG00000130371 15 15q15.1 phospholipase A2, group IVE protein-coding PLA2G4E phospholipase A2, group IVE O cPLA2-epsilon|cytosolic phospholipase A2 epsilon 20121230 -9606 123775 C16orf46 - - HGNC:26525|Ensembl:ENSG00000166455|HPRD:08730|Vega:OTTHUMG00000137629 16 16q23.2 chromosome 16 open reading frame 46 protein-coding C16orf46 chromosome 16 open reading frame 46 O uncharacterized protein C16orf46 20121230 -9606 123787 PRSS29P - ISP2 HGNC:17542 16 16p13.3 protease, serine, 29, pseudogene pseudo PRSS29P protease, serine, 29, pseudogene O - 20121230 -9606 123803 NTAN1 - PNAA|PNAD HGNC:29909|Ensembl:ENSG00000157045|HPRD:17649|Vega:OTTHUMG00000129849 16 16p13.11 N-terminal asparagine amidase protein-coding NTAN1 N-terminal asparagine amidase O protein N-terminal Asn amidase|protein N-terminal asparagine amidohydrolase|protein NH2-terminal asparagine deamidase|protein NTN-amidase 20121230 -9606 123811 FOPNL - C16orf63|FOR20|PHSECRG2 HGNC:26435|Ensembl:ENSG00000133393|HPRD:08096|Vega:OTTHUMG00000129923 16 16p13.11 FGFR1OP N-terminal like protein-coding FOPNL FGFR1OP N-terminal like O FGFR1OP N-terminal-like protein|FOP-related protein of 20 kDa|lisH domain-containing protein C16orf63|lisH domain-containing protein FOPNL|pluripotent embryonic stem cell-related protein 20121230 -9606 123862 LOC123862 - - - 16 16q24.1 interferon induced transmembrane protein pseudogene pseudo - - - - 20121230 -9606 123872 DNAAF1 - CILD13|LRRC50|ODA7 HGNC:30539|MIM:613190|Ensembl:ENSG00000154099|HPRD:14023|Vega:OTTHUMG00000128517 16 16q24.1 dynein, axonemal, assembly factor 1 protein-coding DNAAF1 dynein, axonemal, assembly factor 1 O dynein assembly factor 1, axonemal|leucine rich repeat containing 50|leucine-rich repeat-containing protein 50|outer row dynein assembly 7 homolog 20121230 -9606 123876 ACSM2A - A-923A4.1|ACSM2 HGNC:32017|MIM:614358|Ensembl:ENSG00000183747|HPRD:17292|Vega:OTTHUMG00000177401 16 16p12.3 acyl-CoA synthetase medium-chain family member 2A protein-coding ACSM2A acyl-CoA synthetase medium-chain family member 2A O Homolog of rat kidney-specific (KS)|acyl-coenzyme A synthetase ACSM2A, mitochondrial|butyrate--CoA ligase 2A|butyryl-coenzyme A synthetase 2A|middle-chain acyl-CoA synthetase 2A 20121230 -9606 123879 DCUN1D3 - 44M2.4 HGNC:28734|Ensembl:ENSG00000188215|HPRD:14660|Vega:OTTHUMG00000131553 16 16p12.3 DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) protein-coding DCUN1D3 DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) O DCN1-like protein 3|DCUN1 domain-containing protein 3|defective in cullin neddylation protein 1-like protein 3 20121230 -9606 123904 NRN1L UNQ2446/PRO5725 UNQ2446 HGNC:29811|Ensembl:ENSG00000188038|HPRD:18261|Vega:OTTHUMG00000137541 16 16q22.1 neuritin 1-like protein-coding NRN1L neuritin 1-like O MRCC2446|neuritin-like protein 20121230 -9606 123920 CMTM3 - BNAS2|CKLFSF3 HGNC:19174|MIM:607886|Ensembl:ENSG00000140931|HPRD:16259|Vega:OTTHUMG00000137503 16 16q21 CKLF-like MARVEL transmembrane domain containing 3 protein-coding CMTM3 CKLF-like MARVEL transmembrane domain containing 3 O CKLF-like MARVEL transmembrane domain-containing protein 3|chemokine-like factor superfamily member 3 20121230 -9606 123970 C16orf78 - - HGNC:28479|Ensembl:ENSG00000166152|HPRD:14560|Vega:OTTHUMG00000133149 16 16q12.1 chromosome 16 open reading frame 78 protein-coding C16orf78 chromosome 16 open reading frame 78 O uncharacterized protein C16orf78 20121230 -9606 124044 SPATA2L - C16orf76|tamo HGNC:28393|Ensembl:ENSG00000158792|HPRD:14515|Vega:OTTHUMG00000138047 16 16q24.3 spermatogenesis associated 2-like protein-coding SPATA2L spermatogenesis associated 2-like O SPATA2-like protein|spermatogenesis-associated protein 2-like protein 20121230 -9606 124045 C16orf55 - - HGNC:26463|Ensembl:ENSG00000167523|HPRD:08105|Vega:OTTHUMG00000138048 16 16q24.3 chromosome 16 open reading frame 55 protein-coding C16orf55 chromosome 16 open reading frame 55 O uncharacterized protein C16orf55 20121230 -9606 124056 NOXO1 - P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28 HGNC:19404|MIM:611256|Ensembl:ENSG00000196408|HPRD:14834|Vega:OTTHUMG00000128707 16 16p13.3 NADPH oxidase organizer 1 protein-coding NOXO1 NADPH oxidase organizer 1 O NADPH oxidase regulatory protein|Nox organizer 1|SH3 and PX domain-containing protein 5|nox-organizing protein 1|regulatory protein P41NOX 20121230 -9606 124093 CCDC78 LA16c-444G9.2 C16orf25|CNM4|JFP10 HGNC:14153|MIM:614666|Ensembl:ENSG00000162004|HPRD:08174|Vega:OTTHUMG00000121176 16 16p13.3 coiled-coil domain containing 78 protein-coding CCDC78 coiled-coil domain containing 78 O coiled-coil domain-containing protein 78 20121230 -9606 124149 ANKRD26P1 hCG_24312 - HGNC:32955|HPRD:13482 16 16q11.2 ankyrin repeat domain 26 pseudogene 1 pseudo ANKRD26P1 ankyrin repeat domain 26 pseudogene 1 O - 20121230 -9606 124152 IQCK - - HGNC:28556|Ensembl:ENSG00000174628|HPRD:11340|Vega:OTTHUMG00000131453 16 16p12.3 IQ motif containing K protein-coding IQCK IQ motif containing K O IQ domain-containing protein K 20121230 -9606 124199 EEF1A1P38 - - HGNC:37916 16 16p12.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 38 pseudo EEF1A1P38 eukaryotic translation elongation factor 1 alpha 1 pseudogene 38 O - 20121230 -9606 124220 ZG16B UNQ773/PRO1567 EECP|HRPE773|JCLN2|PAUF|PRO1567 HGNC:30456|Ensembl:ENSG00000162078|HPRD:14024|Vega:OTTHUMG00000128933 16 16p13.3 zymogen granule protein 16B protein-coding ZG16B zymogen granule protein 16B O endocrine and exocrine protein|jacalin-like lectin domain containing 2|pancreatic adenocarcinoma upregulated factor|zymogen granule protein 16 homolog B 20121230 -9606 124221 PRSS30P - Disp|TMPRSS8|TMPRSS8P HGNC:28753|HPRD:07132 16 16p13.3 protease, serine, 30, pseudogene pseudo PRSS30P protease, serine, 30, pseudogene O - 20121230 -9606 124222 PAQR4 - - HGNC:26386|MIM:614578|Ensembl:ENSG00000162073|HPRD:08697|Vega:OTTHUMG00000128977 16 16p13.3 progestin and adipoQ receptor family member IV protein-coding PAQR4 progestin and adipoQ receptor family member IV O progestin and adipoQ receptor family member 4 20121230 -9606 124245 ZC3H18 - NHN1 HGNC:25091|Ensembl:ENSG00000158545|HPRD:11232|Vega:OTTHUMG00000137679 16 16q24.2 zinc finger CCCH-type containing 18 protein-coding ZC3H18 zinc finger CCCH-type containing 18 O conserved nuclear protein NHN1|nuclear protein NHN1|zinc finger CCCH domain-containing protein 18 20121230 -9606 124274 GPR139 - GPRg1|PGR3 HGNC:19995|Ensembl:ENSG00000180269|HPRD:17062|Vega:OTTHUMG00000177690 16 16p12.3 G protein-coupled receptor 139 protein-coding GPR139 G protein-coupled receptor 139 O G protein-coupled receptor PGR3|G-protein-coupled receptor PGR3|g(q)-coupled orphan receptor GPRg1|probable G-protein coupled receptor 139 20121230 -9606 124359 CDYL2 - PCCP1 HGNC:23030|Ensembl:ENSG00000166446|HPRD:10819|Vega:OTTHUMG00000177004 16 16q23.2 chromodomain protein, Y-like 2 protein-coding CDYL2 chromodomain protein, Y-like 2 O CDY-like 2|chromodomain Y-like protein 2|prostate cancer candidate protein 1, PCCP1 20121230 -9606 124401 ANKS3 - - HGNC:29422|Ensembl:ENSG00000168096|HPRD:13909|Vega:OTTHUMG00000129478 16 16p13.3 ankyrin repeat and sterile alpha motif domain containing 3 protein-coding ANKS3 ankyrin repeat and sterile alpha motif domain containing 3 O ankyrin repeat and SAM domain-containing protein 3 20121230 -9606 124402 UBALD1 PP11303 FAM100A HGNC:29576|Ensembl:ENSG00000153443|HPRD:14025|Vega:OTTHUMG00000129472 16 16p13.3 UBA-like domain containing 1 protein-coding UBALD1 UBA-like domain containing 1 O family with sequence similarity 100, member A|protein FAM100A 20121230 -9606 124404 SEPT12 - SPGF10 HGNC:26348|MIM:611562|Ensembl:ENSG00000140623|HPRD:08061|Vega:OTTHUMG00000129481 16 16p13.3 septin 12 protein-coding SEPT12 septin 12 O septin-12 20121230 -9606 124411 ZNF720 - - HGNC:26987|Ensembl:ENSG00000197302|HPRD:14026|Vega:OTTHUMG00000167515 16 16p11.2 zinc finger protein 720 protein-coding ZNF720 zinc finger protein 720 O putative protein ZNF720 20121230 -9606 124446 TMEM219 - IGFBP-3R HGNC:25201|Ensembl:ENSG00000149932|HPRD:18546|Vega:OTTHUMG00000177105 16 16p11.2 transmembrane protein 219 protein-coding TMEM219 transmembrane protein 219 O insulin-like growth factor binding protein-3 receptor|insulin-like growth factor-binding protein 3 receptor 20121230 -9606 124454 EARS2 - COXPD12|MSE1 HGNC:29419|MIM:612799|Ensembl:ENSG00000103356|Vega:OTTHUMG00000177018 16 16p12.2 glutamyl-tRNA synthetase 2, mitochondrial protein-coding EARS2 glutamyl-tRNA synthetase 2, mitochondrial O gluRS|glutamate tRNA ligase 2, mitochondrial|glutamate--tRNA ligase|glutamyl-tRNA synthetase 2, mitochondrial (putative)|probable glutamate--tRNA ligase, mitochondrial|probable glutamyl-tRNA synthetase, mitochondrial 20121230 -9606 124460 SNX20 - SLIC1 HGNC:30390|MIM:613281|Ensembl:ENSG00000167208|HPRD:15401|Vega:OTTHUMG00000133173 16 16q12.1 sorting nexin 20 protein-coding SNX20 sorting nexin 20 O selectin ligand interactor cytoplasmic 1|selectin ligand interactor cytoplasmic-1|selectin ligand-interactor cytoplasmic 1|sorting nexin-20 20121230 -9606 124491 TMEM170A - TMEM170 HGNC:29577|Ensembl:ENSG00000166822|HPRD:14027|Vega:OTTHUMG00000137614 16 16q23.1 transmembrane protein 170A protein-coding TMEM170A transmembrane protein 170A O transmembrane protein 170 20121230 -9606 124496 ATP5F1P7 - - HGNC:39748 16 16q23.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 7 pseudo ATP5F1P7 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 7 O - 20121230 -9606 124512 METTL23 - C17orf95 HGNC:26988|Ensembl:ENSG00000181038|Vega:OTTHUMG00000180371 17 17q25.1 methyltransferase like 23 protein-coding METTL23 methyltransferase like 23 O methyltransferase-like protein 23 20121230 -9606 124535 HSF5 - HSF 5|HSTF 5 HGNC:26862|Ensembl:ENSG00000176160|Vega:OTTHUMG00000179078 17 17q22 heat shock transcription factor family member 5 protein-coding HSF5 heat shock transcription factor family member 5 O heat shock factor protein 5|heat shock transcription factor 5 20121230 -9606 124538 OR4D2 - BC2009|OR17-24 HGNC:8294|Ensembl:ENSG00000255713|HPRD:14967|Vega:OTTHUMG00000178801 17 17q22 olfactory receptor, family 4, subfamily D, member 2 protein-coding OR4D2 olfactory receptor, family 4, subfamily D, member 2 O B-lymphocyte membrane protein BC2009|G-protein coupled membrane protein|olfactory receptor 4D2|olfactory receptor OR17-24 20121230 -9606 124540 MSI2 - MSI2H HGNC:18585|MIM:607897|Ensembl:ENSG00000153944|HPRD:07438|Vega:OTTHUMG00000178398 17 17q22 musashi RNA-binding protein 2 protein-coding MSI2 musashi RNA-binding protein 2 O RNA-binding protein Musashi homolog 2|musashi homolog 2|musashi-2 20121230 -9606 124565 SLC38A10 PP1744 - HGNC:28237|Ensembl:ENSG00000157637|HPRD:17506|Vega:OTTHUMG00000168049 17 17q25.3 solute carrier family 38, member 10 protein-coding SLC38A10 solute carrier family 38, member 10 O putative sodium-coupled neutral amino acid transporter 10 20121230 -9606 124583 CANT1 - DBQD|SCAN-1|SCAN1|SHAPY HGNC:19721|MIM:613165|Ensembl:ENSG00000171302|HPRD:13003|Vega:OTTHUMG00000177570 17 17q25.3 calcium activated nucleotidase 1 protein-coding CANT1 calcium activated nucleotidase 1 O Ca2+-dependent endoplasmic reticulum nucleoside diphosphatase|apyrase homolog|micromelic dwarfism with vertebral and metaphyseal abnormalities and advanced carpotarsal ossification|putative MAPK-activating protein PM09|putative NF-kappa-B-activating protein 107|soluble Ca-activated nucleotidase, isozyme 1|soluble calcium-activated nucleotidase 1|soluble calcium-activated nucleotidase SCAN-1 20121230 -9606 124590 USH1G - ANKS4A|SANS HGNC:16356|MIM:607696|Ensembl:ENSG00000182040|HPRD:09648|Vega:OTTHUMG00000178864 17 17q25.1 Usher syndrome 1G (autosomal recessive) protein-coding USH1G Usher syndrome 1G (autosomal recessive) O Usher syndrome type-1G protein|scaffold protein containing ankyrin repeats and SAM domain 20121230 -9606 124599 CD300LB UNQ2530/PRO6029 CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 HGNC:30811|MIM:610705|Ensembl:ENSG00000178789|HPRD:18223|Vega:OTTHUMG00000067606 17 17q25.1 CD300 molecule-like family member b protein-coding CD300LB CD300 molecule-like family member b O CD300 antigen like family member B|CD300 antigen-like family member B|CD300 molecule like family member b|CMRF35-like molecule 7|immune receptor expressed on myeloid cells 3|leukocyte mono-Ig-like receptor 5|triggering receptor expressed on myeloid cells 5 20121230 -9606 124602 KIF19 - KIF19A HGNC:26735|Ensembl:ENSG00000196169|HPRD:08782|Vega:OTTHUMG00000150694 17 17q25.1 kinesin family member 19 protein-coding KIF19 kinesin family member 19 O kinesin-like protein KIF19 20121230 -9606 124626 ZPBP2 - ZPBPL HGNC:20678|MIM:608499|Ensembl:ENSG00000186075|HPRD:18365|Vega:OTTHUMG00000133022 17 17q12 zona pellucida binding protein 2 protein-coding ZPBP2 zona pellucida binding protein 2 O ZPBP-like protein|zona pellucida-binding protein 2 20121230 -9606 124637 CYB5D1 - - HGNC:26516|Ensembl:ENSG00000182224|HPRD:13408|Vega:OTTHUMG00000178175 17 17p13.1 cytochrome b5 domain containing 1 protein-coding CYB5D1 cytochrome b5 domain containing 1 O cytochrome b5 domain-containing protein 1 20121230 -9606 124641 OVCA2 - - HGNC:24203|MIM:607896|Ensembl:ENSG00000214014|Ensembl:ENSG00000262664|HPRD:07437|Vega:OTTHUMG00000132471 17 17p13.3 ovarian tumor suppressor candidate 2 protein-coding OVCA2 ovarian tumor suppressor candidate 2 O candidate tumor suppressor in ovarian cancer 2|ovarian cancer gene-2 protein|ovarian cancer-associated gene 2 protein 20121230 -9606 124685 LOC124685 hCG_1644301 - - 17 17q24.3 myosin, light chain 6, alkali, smooth muscle and non-muscle pseudogene pseudo - - - - 20121230 -9606 124739 USP43 - - HGNC:20072|Ensembl:ENSG00000154914|Vega:OTTHUMG00000177942 17 17p13.1 ubiquitin specific peptidase 43 protein-coding USP43 ubiquitin specific peptidase 43 O deubiquitinating enzyme 43|ubiquitin carboxyl-terminal hydrolase 43|ubiquitin specific protease 43|ubiquitin thioesterase 43|ubiquitin thiolesterase 43|ubiquitin-specific-processing protease 43 20121230 -9606 124751 KRBA2 - - HGNC:26989|Ensembl:ENSG00000184619|HPRD:14028|Vega:OTTHUMG00000132864 17 17p13.1 KRAB-A domain containing 2 protein-coding KRBA2 KRAB-A domain containing 2 O KRAB A domain containing 2|KRAB-A domain-containing protein 2 20121230 -9606 124773 C17orf64 - - HGNC:26990|Ensembl:ENSG00000141371|HPRD:14029|Vega:OTTHUMG00000157171 17 17q23.2 chromosome 17 open reading frame 64 protein-coding C17orf64 chromosome 17 open reading frame 64 O uncharacterized protein C17orf64 20121230 -9606 124783 SPATA32 - AEP2|C17orf46|TEX34|VAD1.2 HGNC:26349|Ensembl:ENSG00000184361|HPRD:08690|Vega:OTTHUMG00000180363 17 17q21.31 spermatogenesis associated 32 protein-coding SPATA32 spermatogenesis associated 32 O acrosome expressed 2|testis expressed 34|testis-expressed sequence 34 protein 20121230 -9606 124790 HEXIM2 L3 - HGNC:28591|Ensembl:ENSG00000168517|HPRD:08129|Vega:OTTHUMG00000180193 17 17q21.31 hexamethylene bis-acetamide inducible 2 protein-coding HEXIM2 hexamethylene bis-acetamide inducible 2 O MAQ1 paralog|hexamethylene bis-acetamide-inducible protein 2|hexamethylene-bis-acetamide-inducible transcript 2|hexamthylene bis-acetamide inducible 2|protein HEXIM2 20121230 -9606 124801 LSM12 - PNAS-135 HGNC:26407|MIM:611793|Ensembl:ENSG00000161654|HPRD:08701|Vega:OTTHUMG00000181804 17 17q21.31 LSM12 homolog (S. cerevisiae) protein-coding LSM12 LSM12 homolog (S. cerevisiae) O protein LSM12 homolog 20121230 -9606 124808 CCDC43 - - HGNC:26472|Ensembl:ENSG00000180329|HPRD:08107|Vega:OTTHUMG00000181822 17 17q21.31 coiled-coil domain containing 43 protein-coding CCDC43 coiled-coil domain containing 43 O coiled-coil domain-containing protein 43 20121230 -9606 124817 CNTD1 - CNTD HGNC:26847|Ensembl:ENSG00000176563|HPRD:08271|Vega:OTTHUMG00000180652 17 17q21.31 cyclin N-terminal domain containing 1 protein-coding CNTD1 cyclin N-terminal domain containing 1 O cyclin N-terminal domain-containing protein 1 20121230 -9606 124842 TMEM132E - - HGNC:26991|Ensembl:ENSG00000181291|HPRD:14030|Vega:OTTHUMG00000132927 17 17q12 transmembrane protein 132E protein-coding TMEM132E transmembrane protein 132E O - 20121230 -9606 124857 WFIKKN2 UNQ9235/PRO31996 GASP-1|WFIKKNRP|hGASP-1 HGNC:30916|MIM:610895|Ensembl:ENSG00000173714|HPRD:18303|Vega:OTTHUMG00000162274 17 17q21.33 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 O WAP, FS, Ig, two KU and NTR module related protein|WAP, follistatin, immunoglobulin, kunitz and NTR domain-containing-related protein|WAP, kazal, immunoglobulin, kunitz and NTR domain-containing protein 2|WFIKKN-related protein|growth and differentiation factor-associated serum protein 1|multivalent protease inhibitor protein 20121230 -9606 124865 LOC124865 - - - 17 17q21.33 mRNA turnover 4 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 124871 FLJ40194 - - HPRD:16950 17 17q21.32 uncharacterized FLJ40194 miscRNA - - - - 20121230 -9606 124872 B4GALNT2 - B4GALT|GALGT2 HGNC:24136|MIM:111730|Ensembl:ENSG00000167080|HPRD:13558|Vega:OTTHUMG00000161307 17 17q21.32 beta-1,4-N-acetyl-galactosaminyl transferase 2 protein-coding B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 O UDP-GalNAc:Neu5Aca2-3Galb-R b1,4-N-acetylgalactosaminyltransferase|UDP-GalNAc:Neu5Acalpha2-3Galbeta-R beta1,4-N-acetylgalactosaminyltransferase|beta 1,4 N-acetylgalactosaminyltransferase/betal,4 GalNAcT/Sda-GalNAcT|beta-1,4 N-acetylgalactosaminyltransferase 2|beta-4-N-acetylgalactosaminyltransferase|sd(a) beta-1,4-GalNAc transferase|sda beta-1,4-GalNAc transferase 20121230 -9606 124912 SPACA3 UNQ424/PRO862 1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1 HGNC:16260|MIM:612749|Ensembl:ENSG00000141316|HPRD:15420|Vega:OTTHUMG00000132886 17 17q11.2 sperm acrosome associated 3 protein-coding SPACA3 sperm acrosome associated 3 O cancer/testis antigen 54|lysozyme-like acrosomal sperm-specific secretory protein ALLP-17|lysozyme-like protein 3|lysozyme-like sperm-specific secretory protein ALLP17|sperm acrosome membrane-associated protein 3|sperm lysozyme like protein 1|sperm lysozyme-like protein 1|sperm protein reactive with ASA|sperm protein reactive with antisperm antibodies 20121230 -9606 124923 SGK494 - - Ensembl:ENSG00000167524|HPRD:08680|Vega:OTTHUMG00000179342 17 17q11.2 uncharacterized serine/threonine-protein kinase SgK494 protein-coding - - - sugen kinase 494 20121230 -9606 124925 SEZ6 - - HGNC:15955|Ensembl:ENSG00000063015|HPRD:18041|Vega:OTTHUMG00000168010 17 17q11.2 seizure related 6 homolog (mouse) protein-coding SEZ6 seizure related 6 homolog (mouse) O SEZ-6|hSEZ-6|seizure protein 6 homolog 20121230 -9606 124930 ANKRD13B - - HGNC:26363|Ensembl:ENSG00000198720|HPRD:08694|Vega:OTTHUMG00000132731 17 17q11.2 ankyrin repeat domain 13B protein-coding ANKRD13B ankyrin repeat domain 13B O ankyrin repeat domain-containing protein 13B 20121230 -9606 124935 SLC43A2 PP7664 LAT4 HGNC:23087|MIM:610791|Ensembl:ENSG00000167703|HPRD:15390|Vega:OTTHUMG00000090345 17 17p13.3 solute carrier family 43, member 2 protein-coding SLC43A2 solute carrier family 43, member 2 O L-type amino acid transporter 4|amino acid transporter|large neutral amino acids transporter small subunit 4 20121230 -9606 124936 CYB5D2 - - HGNC:28471|Ensembl:ENSG00000167740|HPRD:14549|Vega:OTTHUMG00000177726 17 17p13.2 cytochrome b5 domain containing 2 protein-coding CYB5D2 cytochrome b5 domain containing 2 O cytochrome b5 domain-containing protein 2|neuferricin 20121230 -9606 124944 C17orf49 - BAP18 HGNC:28737|Ensembl:ENSG00000161939|Ensembl:ENSG00000258315|HPRD:14662|Vega:OTTHUMG00000170146|Vega:OTTHUMG00000170147 17 17p13.1 chromosome 17 open reading frame 49 protein-coding C17orf49 chromosome 17 open reading frame 49 O BPTF associated protein of 18 kDa|BPTF-associated protein of 18 kDa|MLL1/MLL complex subunit C17orf49|chromatin complexes subunit BAP18 20121230 -9606 124961 ZFP3 - ZNF752 HGNC:12861|MIM:194480|Ensembl:ENSG00000180787|HPRD:08705|Vega:OTTHUMG00000177799 17 17p13.2 ZFP3 zinc finger protein protein-coding ZFP3 ZFP3 zinc finger protein O zfp-3|zinc finger protein 3 homolog|zinc finger protein 752|zinc finger protein homologous to Zfp-3 in mouse|zinc finger protein-3 20121230 -9606 124974 LOC124974 - - - 17 17p13.2 thioredoxin pseudogene pseudo - - - - 20121230 -9606 124975 GGT6 - - HGNC:26891|MIM:612341|Ensembl:ENSG00000167741|HPRD:08293|Vega:OTTHUMG00000177827 17 17p13.2 gamma-glutamyltransferase 6 protein-coding GGT6 gamma-glutamyltransferase 6 O GGT 6|gamma-glutamyltransferase 6 homolog|gamma-glutamyltranspeptidase 6|glutathione hydrolase 6 20121230 -9606 124976 SPNS2 - - HGNC:26992|MIM:612584|Ensembl:ENSG00000183018|Vega:OTTHUMG00000177739 17 17p13.2 spinster homolog 2 (Drosophila) protein-coding SPNS2 spinster homolog 2 (Drosophila) O protein spinster homolog 2 20121230 -9606 124989 EFCAB13 - C17orf57 HGNC:26864|Ensembl:ENSG00000178852|HPRD:08278|Vega:OTTHUMG00000164767 17 17q21.32 EF-hand calcium binding domain 13 protein-coding EFCAB13 EF-hand calcium binding domain 13 O EF-hand calcium-binding domain-containing protein 13|EF-hand domain-containing protein C17orf57 20121230 -9606 124995 MRPL10 - L10MT|MRP-L10|MRP-L8|MRPL8|RPML8 HGNC:14055|MIM:611825|Ensembl:ENSG00000159111|HPRD:14738|Vega:OTTHUMG00000156302 17 17q21.32 mitochondrial ribosomal protein L10 protein-coding MRPL10 mitochondrial ribosomal protein L10 O 39S ribosomal protein L10, mitochondrial|39S ribosomal protein L8, mitochondrial|L8mt 20121230 -9606 124997 WDR81 - CAMRQ2 HGNC:26600|MIM:614218|Ensembl:ENSG00000167716|HPRD:08748|Vega:OTTHUMG00000153941 17 17p13.3 WD repeat domain 81 protein-coding WDR81 WD repeat domain 81 O WD repeat-containing protein 81 20121230 -9606 125050 RN7SK - 7SK HGNC:10037|MIM:606515 6 6p12.2 RNA, 7SK small nuclear snRNA RN7SK RNA, 7SK small nuclear O - 20121230 -9606 125058 TBC1D16 - - HGNC:28356|Ensembl:ENSG00000167291|HPRD:10261|Vega:OTTHUMG00000177489 17 17q25.3 TBC1 domain family, member 16 protein-coding TBC1D16 TBC1 domain family, member 16 O TBC1 domain family member 16 20121230 -9606 125061 AFMID - FKF|KF|KFA HGNC:20910|Ensembl:ENSG00000183077|HPRD:16478|Vega:OTTHUMG00000153957 17 17q25.3 arylformamidase protein-coding AFMID arylformamidase O KFase|N-formylkynurenine formamidase|kynurenine formamidase|probable arylformamidase 20121230 -9606 125111 GJD3 - CX31.9|Cx30.2|GJA11|GJC1 HGNC:19147|MIM:607425|Ensembl:ENSG00000183153|HPRD:08461|Vega:OTTHUMG00000179634 17 17q21.2 gap junction protein, delta 3, 31.9kDa protein-coding GJD3 gap junction protein, delta 3, 31.9kDa O connexin 31.9|connexin-31.9|gap junction alpha-11 protein|gap junction chi-1 protein|gap junction delta-3 protein 20121230 -9606 125113 KRT222 - KA21|KRT222P HGNC:28695|Ensembl:ENSG00000213424|HPRD:11354|Vega:OTTHUMG00000133374 17 17q21.2 keratin 222 protein-coding KRT222 keratin 222 O keratin 222 pseudogene|keratin-222 pseudogene|keratin-like protein KRT222 20121230 -9606 125115 KRT40 - CK-40|K40|KA36 HGNC:26707|Ensembl:ENSG00000204889|HPRD:08304|Vega:OTTHUMG00000133596 17 17q21.2 keratin 40 protein-coding KRT40 keratin 40 O cytokeratin-40|keratin, type I cytoskeletal 40|keratin-40|type I hair keratin KA36 20121230 -9606 125144 C17orf76-AS1 - C17orf45|NCRNA00188|TSAP19 HGNC:28619|HPRD:17549 17 17p11.2 C17orf76 antisense RNA 1 miscRNA C17orf76-AS1 C17orf76 antisense RNA 1 O - 20121230 -9606 125150 ZSWIM7 - SWS1 HGNC:26993|MIM:614535|Ensembl:ENSG00000214941|Vega:OTTHUMG00000059308 17 17p12 zinc finger, SWIM-type containing 7 protein-coding ZSWIM7 zinc finger, SWIM-type containing 7 O SWIM domain containing Srs2 interacting protein 1|SWIM domain-containing and Srs2-interacting protein 1 homolog|SWIM-domain containing Srs2 interacting protein 1|SWIM-type zinc finger domain-containing protein 7|zinc finger SWIM domain-containing protein 7 20121230 -9606 125168 RIBIN - - - 22 - rRNA promoter binding protein protein-coding - - - - 20100615 -9606 125170 SMCR7 - MID49 HGNC:17920|Ensembl:ENSG00000177427|HPRD:18074|Vega:OTTHUMG00000059392 17 17p11.2 Smith-Magenis syndrome chromosome region, candidate 7 protein-coding SMCR7 Smith-Magenis syndrome chromosome region, candidate 7 O Smith-Magenis syndrome chromosomal region candidate gene 7 protein|mitochondrial dynamic protein MID49|mitochondrial dynamic protein of 49 kDa 20121230 -9606 125206 SLC5A10 - SGLT-5|SGLT5 HGNC:23155|Ensembl:ENSG00000154025|HPRD:15394|Vega:OTTHUMG00000178143 17 17p11.2 solute carrier family 5 (sodium/glucose cotransporter), member 10 protein-coding SLC5A10 solute carrier family 5 (sodium/glucose cotransporter), member 10 O Na(+)/glucose cotransporter 5|sodium/glucose cotransporter 5 20121230 -9606 125208 RPS2P46 - RPS2_22_1525 HGNC:35839 17 17p11 ribosomal protein S2 pseudogene 46 pseudo RPS2P46 ribosomal protein S2 pseudogene 46 O - 20121230 -9606 125228 FAM210A - C18orf19|HsT2329 HGNC:28346|Ensembl:ENSG00000177150|HPRD:10717|Vega:OTTHUMG00000131719 18 18p11.21 family with sequence similarity 210, member A protein-coding FAM210A family with sequence similarity 210, member A O protein FAM210A|uncharacterized protein C18orf19 20121230 -9606 125242 KRT18P8 - - HGNC:31093 18 18p11.22 keratin 18 pseudogene 8 pseudo KRT18P8 keratin 18 pseudogene 8 O - 20121230 -9606 125336 LOXHD1 - DFNB77|LH2D1 HGNC:26521|MIM:613072|Ensembl:ENSG00000167210|HPRD:08316|Vega:OTTHUMG00000132644 18 18q21.1 lipoxygenase homology domains 1 protein-coding LOXHD1 lipoxygenase homology domains 1 O lipoxygenase homology domain-containing protein 1 20121230 -9606 125371 RPL22P1 - RPL22_5_435 HGNC:17998 3 3q26.2 ribosomal protein L22 pseudogene 1 pseudo RPL22P1 ribosomal protein L22 pseudogene 1 O - 20121230 -9606 125476 INO80C - C18orf37|IES6|hIes6 HGNC:26994|Ensembl:ENSG00000153391|HPRD:10719|Vega:OTTHUMG00000132564 18 18q12.2 INO80 complex subunit C protein-coding INO80C INO80 complex subunit C O IES6 homolog 20121230 -9606 125488 TTC39C - C18orf17|HsT2697 HGNC:26595|Ensembl:ENSG00000168234|HPRD:08745|Vega:OTTHUMG00000179403 18 18q11.2 tetratricopeptide repeat domain 39C protein-coding TTC39C tetratricopeptide repeat domain 39C O TPR repeat protein 39C|tetratricopeptide repeat protein 39C 20121230 -9606 125704 FAM69C - C18orf51 HGNC:31729|MIM:614544|Ensembl:ENSG00000187773|Vega:OTTHUMG00000156984 18 18q22.3 family with sequence similarity 69, member C protein-coding FAM69C family with sequence similarity 69, member C O protein FAM69C 20121230 -9606 125875 CLDND2 - - HGNC:28511|Ensembl:ENSG00000160318|HPRD:14574 19 19q13.41 claudin domain containing 2 protein-coding CLDND2 claudin domain containing 2 O claudin domain-containing protein 2 20121230 -9606 125893 ZNF816 - ZNF816A HGNC:26995|Ensembl:ENSG00000180257|HPRD:18722|Vega:OTTHUMG00000167761 19 19q13.41 zinc finger protein 816 protein-coding ZNF816 zinc finger protein 816 O zinc finger protein 816A 20121230 -9606 125919 ZNF543 - - HGNC:25281|Ensembl:ENSG00000178229|HPRD:15829 19 19q13.43 zinc finger protein 543 protein-coding ZNF543 zinc finger protein 543 O - 20121230 -9606 125931 CEACAM20 UNQ9366/PRO34155 UNQ9366 HGNC:24879|HPRD:18273 19 19q13.31 carcinoembryonic antigen-related cell adhesion molecule 20 protein-coding CEACAM20 carcinoembryonic antigen-related cell adhesion molecule 20 O GPAD9366 20121230 -9606 125950 RAVER1 hCG_2033729 - HGNC:30296|MIM:609950|Ensembl:ENSG00000161847|HPRD:11484|Vega:OTTHUMG00000180409 19 19p13.2 ribonucleoprotein, PTB-binding 1 protein-coding RAVER1 ribonucleoprotein, PTB-binding 1 O protein raver-1|ribonucleoprotein PTB-binding 1 20121230 -9606 125958 OR7D4 - OR19-7|OR19-B|OR19B|OR7D4P|hg105 HGNC:8380|MIM:611538|Ensembl:ENSG00000174667|HPRD:15073|Vega:OTTHUMG00000179936 19 19p13.2 olfactory receptor, family 7, subfamily D, member 4 protein-coding OR7D4 olfactory receptor, family 7, subfamily D, member 4 O odorant receptor family 7 subfamily D member 4 RT|olfactory receptor 7D4|olfactory receptor OR19-7|olfactory receptor, family 7, subfamily D, member 4 pseudogene 20121230 -9606 125962 OR7G1 - OR19-15|OR19-8|OR7G1P HGNC:8465|Ensembl:ENSG00000161807|HPRD:15074|Vega:OTTHUMG00000168067 19 19p13.2 olfactory receptor, family 7, subfamily G, member 1 protein-coding OR7G1 olfactory receptor, family 7, subfamily G, member 1 O olfactory receptor 19-15|olfactory receptor 7G1|olfactory receptor OR19-8 20121230 -9606 125963 OR1M1 - OR19-5|OR19-6 HGNC:8220|Ensembl:ENSG00000170929|HPRD:17689|Vega:OTTHUMG00000179930 19 19p13.2 olfactory receptor, family 1, subfamily M, member 1 protein-coding OR1M1 olfactory receptor, family 1, subfamily M, member 1 O olfactory receptor 19-6|olfactory receptor 1M1|olfactory receptor OR19-5 20121230 -9606 125965 COX6B2 - COXVIB2|CT59 HGNC:24380|Ensembl:ENSG00000160471|HPRD:13088|Vega:OTTHUMG00000180774 19 19q13.42 cytochrome c oxidase subunit VIb polypeptide 2 (testis) protein-coding COX6B2 cytochrome c oxidase subunit VIb polypeptide 2 (testis) O COX VIb-2|cancer/testis antigen 59|cytochrome c oxidase subunit 6B2|cytochrome c oxidase subunit VIb, testes specific|cytochrome c oxidase subunit VIb, testes-specific|cytochrome c oxidase subunit VIb, testis-specific isoform 20121230 -9606 125972 CALR3 - CMH19|CRT2|CT93 HGNC:20407|MIM:611414|Ensembl:ENSG00000141979|HPRD:12999 19 19p13.11 calreticulin 3 protein-coding CALR3 calreticulin 3 O calreticulin-2|calreticulin-3|calsperin|cancer/testis antigen 93 20121230 -9606 125981 ACER1 - ALKCDase1|ASAH3 HGNC:18356|MIM:613491|Ensembl:ENSG00000167769|HPRD:12496 19 19p13.3 alkaline ceramidase 1 protein-coding ACER1 alkaline ceramidase 1 O N-acylsphingosine amidohydrolase (alkaline ceramidase) 3|N-acylsphingosine amidohydrolase 3|acylsphingosine deacylase 3|alkCDase 1|alkaline CDase 1 20121230 -9606 125988 C19orf70 - P117|QIL1 HGNC:33702|Ensembl:ENSG00000174917|HPRD:15198|Vega:OTTHUMG00000180503 19 19p13.3 chromosome 19 open reading frame 70 protein-coding C19orf70 chromosome 19 open reading frame 70 O protein QIL1 20121230 -9606 125997 MBD3L2 - - HGNC:18532|MIM:607964|Ensembl:ENSG00000230522|HPRD:12139 19 19p13.2 methyl-CpG binding domain protein 3-like 2 protein-coding MBD3L2 methyl-CpG binding domain protein 3-like 2 O MBD3-like protein 2|methyl-CpG-binding domain protein 3-like 2 20121230 -9606 126003 TRAPPC5 - TRS31 HGNC:23067|Ensembl:ENSG00000181029 19 19p13.2 trafficking protein particle complex 5 protein-coding TRAPPC5 trafficking protein particle complex 5 O trafficking protein particle complex subunit 5 20121230 -9606 126006 PCP2 - GPSM4 HGNC:30209|Ensembl:ENSG00000174788|HPRD:18723 19 19p13.2 Purkinje cell protein 2 protein-coding PCP2 Purkinje cell protein 2 O Purkinje cell protein 2 homolog|Purkinje cell-specific protein L7 20121230 -9606 126014 OSCAR - PIGR3 HGNC:29960|MIM:606862|Ensembl:ENSG00000170909|HPRD:06035|Vega:OTTHUMG00000064966 19 19q13.42 osteoclast associated, immunoglobulin-like receptor protein-coding OSCAR osteoclast associated, immunoglobulin-like receptor O PIgR-3|hOSCAR|osteoclast associated receptor OSCAR-S1|osteoclast associated receptor OSCAR-S2|osteoclast-associated immunoglobulin-like receptor|osteoclast-associated receptor|poly-Ig receptor 3|polymeric immunoglobulin receptor 3 20121230 -9606 126017 ZNF813 - - HGNC:33257|Ensembl:ENSG00000198346|HPRD:13367|Vega:OTTHUMG00000158309 19 19q13.42 zinc finger protein 813 protein-coding ZNF813 zinc finger protein 813 O - 20121230 -9606 126037 EEF1DP1 hCG_2000329 - HGNC:32474 19 19p13.12 eukaryotic translation elongation factor 1 delta pseudogene 1 pseudo EEF1DP1 eukaryotic translation elongation factor 1 delta pseudogene 1 O - 20121230 -9606 126052 TGIF1P1 - - HGNC:30730 19 19q13.32 TGFB-induced factor homeobox 1 pseudogene 1 pseudo TGIF1P1 TGFB-induced factor homeobox 1 pseudogene 1 O - 20121230 -9606 126068 ZNF441 - - HGNC:20875|Ensembl:ENSG00000197044|HPRD:15794|Vega:OTTHUMG00000154449 19 19p13.2 zinc finger protein 441 protein-coding ZNF441 zinc finger protein 441 O - 20121230 -9606 126069 ZNF491 - - HGNC:23706|Ensembl:ENSG00000177599|HPRD:15803|Vega:OTTHUMG00000156529 19 19p13.2 zinc finger protein 491 protein-coding ZNF491 zinc finger protein 491 O - 20121230 -9606 126070 ZNF440 - - HGNC:20874|Ensembl:ENSG00000171295|HPRD:11718|Vega:OTTHUMG00000156403 19 19p13.2 zinc finger protein 440 protein-coding ZNF440 zinc finger protein 440 O - 20121230 -9606 126074 SWSAP1 - C19orf39|SWS1AP1|ZSWIM7AP1 HGNC:26638|MIM:614536|Ensembl:ENSG00000173928|HPRD:08179|Vega:OTTHUMG00000182025 19 19p13.2 SWIM-type zinc finger 7 associated protein 1 protein-coding SWSAP1 SWIM-type zinc finger 7 associated protein 1 O ATPase SWSAP1|SWIM-type zinc finger 7-associated protein 1|SWS1-associated protein 1|ZSWIM7-associated protein 1|zinc finger, SWIM-type containing 7 associated protein 1 20121230 -9606 126075 CCDC159 hCG_29977 - HGNC:26996|Ensembl:ENSG00000183401|Vega:OTTHUMG00000182022 19 19p13.2 coiled-coil domain containing 159 protein-coding CCDC159 coiled-coil domain containing 159 O coiled-coil domain-containing protein 159 20121230 -9606 126119 JOSD2 SBBI54 - HGNC:28853|Ensembl:ENSG00000161677|HPRD:15297 19 19q13.33 Josephin domain containing 2 protein-coding JOSD2 Josephin domain containing 2 O Josephin-2|josephin domain-containing protein 2 20121230 -9606 126123 IZUMO2 UNQ6978/PRO21961 C19orf41|PLAL6978|PRO21961|SCRL HGNC:28518|Ensembl:ENSG00000161652|HPRD:14578|Vega:OTTHUMG00000074063 19 19q13.33 IZUMO family member 2 protein-coding IZUMO2 IZUMO family member 2 O izumo sperm-egg fusion protein 2 20121230 -9606 126129 CPT1C - CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC HGNC:18540|MIM:608846|Ensembl:ENSG00000169169|HPRD:12315 19 19q13.33 carnitine palmitoyltransferase 1C protein-coding CPT1C carnitine palmitoyltransferase 1C O carnitine O-palmitoyltransferase 1, brain isoform|carnitine O-palmitoyltransferase I, brain isoform|carnitine palmitoyltransferase I related C 20121230 -9606 126133 ALDH16A1 - - HGNC:28114|MIM:613358|Ensembl:ENSG00000161618|HPRD:14394 19 19q13.33 aldehyde dehydrogenase 16 family, member A1 protein-coding ALDH16A1 aldehyde dehydrogenase 16 family, member A1 O aldehyde dehydrogenase family 16 member A1 20121230 -9606 126147 NTN5 - - HGNC:25208|Ensembl:ENSG00000142233|HPRD:14031 19 19q13.33 netrin 5 protein-coding NTN5 netrin 5 O netrin-1-like protein|netrin-5 20121230 -9606 126170 LOC126170 - - - 19 19q12 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 126204 NLRP13 - CLR19.7|NALP13|NOD14|PAN13 HGNC:22937|MIM:609660|Ensembl:ENSG00000173572|HPRD:14804|Vega:OTTHUMG00000167839 19 19q13.43 NLR family, pyrin domain containing 13 protein-coding NLRP13 NLR family, pyrin domain containing 13 O NACHT, LRR and PYD containing protein 13|NACHT, LRR and PYD domains-containing protein 13|NACHT, leucine rich repeat and PYD containing 13|nucleotide-binding oligomerization domain protein 14|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 13 20121230 -9606 126205 NLRP8 - CLR19.2|NALP8|NOD16|PAN4 HGNC:22940|MIM:609659|Ensembl:ENSG00000179709|HPRD:14807|Vega:OTTHUMG00000181754 19 19q13.43 NLR family, pyrin domain containing 8 protein-coding NLRP8 NLR family, pyrin domain containing 8 O NACHT, LRR and PYD containing protein 8|NACHT, LRR and PYD domains-containing protein 8|NACHT, leucine rich repeat and PYD containing 8|PYRIN and NACHT-containing protein 4|nucleotide-binding oligomerization domain protein 16|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 8 20121230 -9606 126206 NLRP5 - CLR19.8|MATER|NALP5|PAN11|PYPAF8 HGNC:21269|MIM:609658|Ensembl:ENSG00000171487|HPRD:10111|Vega:OTTHUMG00000149887 19 19q13.43 NLR family, pyrin domain containing 5 protein-coding NLRP5 NLR family, pyrin domain containing 5 O NACHT, LRR and PYD domains-containing protein 5|NACHT, leucine rich repeat and PYD containing 5|mater protein homolog|maternal antigen that embryos require|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 5 20121230 -9606 126208 ZNF787 - TIP20 HGNC:26998|Ensembl:ENSG00000142409|HPRD:14032|Vega:OTTHUMG00000181760 19 19q13.43 zinc finger protein 787 protein-coding ZNF787 zinc finger protein 787 O TTF-I interacting peptide 20|TTF-I-interacting peptide 20|transcription termination factor I interacting peptide 20 20121230 -9606 126231 ZNF573 - - HGNC:26420|Ensembl:ENSG00000189144|HPRD:15852|Vega:OTTHUMG00000048183 19 19q13.12 zinc finger protein 573 protein-coding ZNF573 zinc finger protein 573 O - 20121230 -9606 126235 RPS4XP21 - RPS4P21|RPS4X_10_1649 HGNC:36228 19 19q13.11 ribosomal protein S4X pseudogene 21 pseudo RPS4XP21 ribosomal protein S4X pseudogene 21 O - 20121230 -9606 126242 AKR1B1P7 - - HGNC:33497 19 19q13.11 aldo-keto reductase family 1, member B1 pseudogene 7 pseudo AKR1B1P7 aldo-keto reductase family 1, member B1 pseudogene 7 O - 20121230 -9606 126248 WDR88 - PQWD HGNC:26999|Ensembl:ENSG00000166359|HPRD:14033|Vega:OTTHUMG00000180342 19 19q13.11 WD repeat domain 88 protein-coding WDR88 WD repeat domain 88 O PQQ repeat and WD repeat domain containing|PQQ repeat and WD repeat-containing protein|WD repeat-containing protein 88 20121230 -9606 126259 TMIGD2 UNQ3059/PRO9879 IGPR-1|IGPR1 HGNC:28324|MIM:614715|Ensembl:ENSG00000167664|HPRD:14487 19 19p13.3 transmembrane and immunoglobulin domain containing 2 protein-coding TMIGD2 transmembrane and immunoglobulin domain containing 2 O immunoglobulin and proline-rich receptor 1|immunoglobulin-containing and proline-rich receptor 1|transmembrane and immunoglobulin domain-containing protein 2|transmembrane and immunoglobulin domain-containing protein 2 variant 2|transmembrane and immunoglobulin domain-containing protein 2 variant 3 20121230 -9606 126272 EID2B - EID-3 HGNC:26796|Ensembl:ENSG00000176401|HPRD:08795 19 19q13.2 EP300 interacting inhibitor of differentiation 2B protein-coding EID2B EP300 interacting inhibitor of differentiation 2B O EID-2-like inhibitor of differentiation 3|EID-2-like inhibitor of differentiation-3|EID-2B|EP300-interacting inhibitor of differentiation 2B 20121230 -9606 126282 TNFAIP8L1 - TIPE1 HGNC:28279|Ensembl:ENSG00000185361|HPRD:11314 19 19p13.3 tumor necrosis factor, alpha-induced protein 8-like 1 protein-coding TNFAIP8L1 tumor necrosis factor, alpha-induced protein 8-like 1 O TNF alpha-induced protein 8-like protein 1|TNFAIP8-like protein 1|tumor necrosis factor alpha-induced protein 8-like protein 1|tumor necrosis factor, alpha-induced protein 8-like protein 1 20121230 -9606 126295 ZNF57 - ZNF424 HGNC:13125|Ensembl:ENSG00000171970|HPRD:14034|Vega:OTTHUMG00000164485 19 19p13.3 zinc finger protein 57 protein-coding ZNF57 zinc finger protein 57 O zinc finger protein 424 20121230 -9606 126298 IRGQ FKSG27 IRGQ1 HGNC:24868|Ensembl:ENSG00000167378|HPRD:17161 19 19q13.31 immunity-related GTPase family, Q protein-coding IRGQ immunity-related GTPase family, Q O immunity-related GTPase family Q protein|immunity-related GTPase family, Q1 20121230 -9606 126299 ZNF428 - C19orf37|Zfp428 HGNC:20804|Ensembl:ENSG00000131116|HPRD:14671 19 19q13.31 zinc finger protein 428 protein-coding ZNF428 zinc finger protein 428 O enzyme-like protein PIT13 20121230 -9606 126306 JSRP1 - JP-45|JP45 HGNC:24963|MIM:608743|Ensembl:ENSG00000167476|HPRD:08724|Vega:OTTHUMG00000180413 19 19p13.3 junctional sarcoplasmic reticulum protein 1 protein-coding JSRP1 junctional sarcoplasmic reticulum protein 1 O 2310032K21Rik|homolog of mouse skeletal muscle sarcoplasmic reticulum protein JP-45|junctional-face membrane protein of 45 kDa homolog|skeletal muscle sarcoplasmic reticulum protein JP-45 20121230 -9606 126308 MOB3A - MOB1C|MOBKL2A|moblak HGNC:29802|Ensembl:ENSG00000172081|HPRD:17583|Vega:OTTHUMG00000180353 19 19p13.3 MOB kinase activator 3A protein-coding MOB3A MOB kinase activator 3A O MOB LAK|MOB-LAK|MOB1, Mps One Binder kinase activator-like 2A|mob1 homolog 2A|mps one binder kinase activator-like 2A 20121230 -9606 126321 MFSD12 - C19orf28|PP3501 HGNC:28299|Ensembl:ENSG00000161091|HPRD:12704|Vega:OTTHUMG00000180766 19 19p13.3 major facilitator superfamily domain containing 12 protein-coding MFSD12 major facilitator superfamily domain containing 12 O major facilitator superfamily domain-containing protein 12 20121230 -9606 126326 GIPC3 - C19orf64|DFNB15|DFNB72|DFNB95 HGNC:18183|MIM:608792|Ensembl:ENSG00000179855|HPRD:16386|Vega:OTTHUMG00000167425 19 19p13.3 GIPC PDZ domain containing family, member 3 protein-coding GIPC3 GIPC PDZ domain containing family, member 3 O PDZ domain-containing protein GIPC3 20121230 -9606 126328 NDUFA11 - B14.7|CI-B14.7 HGNC:20371|MIM:612638|Ensembl:ENSG00000174886|Ensembl:ENSG00000267740|HPRD:14818|Vega:OTTHUMG00000180617|Vega:OTTHUMG00000180627 19 19p13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa protein-coding NDUFA11 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa O NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11|NADH-ubiquinone oxidoreductase subunit B14.7|complex I B14.7 subunit 20121230 -9606 126353 C19orf21 - - HGNC:27000|Ensembl:ENSG00000099812|HPRD:12695|Vega:OTTHUMG00000181786 19 19p13.3 chromosome 19 open reading frame 21 protein-coding C19orf21 chromosome 19 open reading frame 21 O uncharacterized protein C19orf21 20121230 -9606 126364 LRRC25 UNQ6169/PRO20174 MAPA HGNC:29806|MIM:607518|Ensembl:ENSG00000175489|HPRD:09597 19 19p13.11 leucine rich repeat containing 25 protein-coding LRRC25 leucine rich repeat containing 25 O leucine-rich repeat-containing protein 25|monocyte and plasmacytoid activated molecule|monocyte and plasmacytoid-activated protein 20121230 -9606 126370 OR1I1 - OR19-20|OR1I1P|OR1I1Q HGNC:8207|Ensembl:ENSG00000094661|HPRD:14915 19 19p13.12 olfactory receptor, family 1, subfamily I, member 1 protein-coding OR1I1 olfactory receptor, family 1, subfamily I, member 1 O olfactory receptor 19-20|olfactory receptor 1I1 20121230 -9606 126374 WTIP - - HGNC:20964|MIM:614790|Ensembl:ENSG00000142279|Vega:OTTHUMG00000182099 19 19q13.11 Wilms tumor 1 interacting protein protein-coding WTIP Wilms tumor 1 interacting protein O WT1-interacting protein|Wilms tumor protein 1-interacting protein 20121230 -9606 126375 ZNF792 - - HGNC:24751|Ensembl:ENSG00000180884|HPRD:13430|Vega:OTTHUMG00000150339 19 19q13.11 zinc finger protein 792 protein-coding ZNF792 zinc finger protein 792 O - 20121230 -9606 126382 NR2C2AP - TRA16 HGNC:30763|MIM:608719|Ensembl:ENSG00000184162|HPRD:16376|Vega:OTTHUMG00000169225 19 19p13.11 nuclear receptor 2C2-associated protein protein-coding NR2C2AP nuclear receptor 2C2-associated protein O TR4 orphan receptor associated protein TRA16|TR4 orphan receptor-associated 16 kDa protein|repressor for TR4 transactivation 20121230 -9606 126393 HSPB6 - Hsp20 HGNC:26511|MIM:610695|Ensembl:ENSG00000004776|HPRD:08130|Vega:OTTHUMG00000048122 19 19q13.12 heat shock protein, alpha-crystallin-related, B6 protein-coding HSPB6 heat shock protein, alpha-crystallin-related, B6 O heat shock 20 kDa-like protein p20|heat shock protein beta-6 20121230 -9606 126402 CCDC105 - - HGNC:26866|Ensembl:ENSG00000160994|HPRD:08280 19 19p13.12 coiled-coil domain containing 105 protein-coding CCDC105 coiled-coil domain containing 105 O coiled-coil domain-containing protein 105 20121230 -9606 126410 CYP4F22 - LI3 HGNC:26820|MIM:611495|Ensembl:ENSG00000171954|HPRD:08256 19 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 22 protein-coding CYP4F22 cytochrome P450, family 4, subfamily F, polypeptide 22 O cytochrome P450 4F22|cytochrome P450, family 2, subfamily E, polypeptide 2 homolog 20121230 -9606 126432 RINL - - HGNC:24795|Ensembl:ENSG00000187994|HPRD:13517|Vega:OTTHUMG00000182299 19 19q13.2 Ras and Rab interactor-like protein-coding RINL Ras and Rab interactor-like O ras and Rab interactor-like protein 20121230 -9606 126433 FBXO27 - FBG5|Fbx27 HGNC:18753|MIM:609099|Ensembl:ENSG00000161243|HPRD:16440 19 19q13.2 F-box protein 27 protein-coding FBXO27 F-box protein 27 O F-box only protein 27|F-box protein FBG5|F-box/G-domain protein 5 20121230 -9606 126506 SNX6P1 - - HGNC:41511 19 19p12 sorting nexin 6 pseudogene 1 pseudo SNX6P1 sorting nexin 6 pseudogene 1 O - 20121230 -9606 126520 PLK5 - PLK-5|PLK5P|SgK384ps HGNC:27001|Ensembl:ENSG00000185988|Vega:OTTHUMG00000180073 19 19p13.3 polo-like kinase 5 protein-coding PLK5 polo-like kinase 5 O inactive serine/threonine-protein kinase PLK5|polo-like kinase 5, pseudogene 20121230 -9606 126526 C19orf47 - - HGNC:26723|Ensembl:ENSG00000160392|HPRD:08216|Vega:OTTHUMG00000179028 19 19q13.2 chromosome 19 open reading frame 47 protein-coding C19orf47 chromosome 19 open reading frame 47 O uncharacterized protein C19orf47 20121230 -9606 126536 LINC00661 - - HGNC:27002|HPRD:18725 19 19p13.12 long intergenic non-protein coding RNA 661 miscRNA LINC00661 long intergenic non-protein coding RNA 661 O - 20121230 -9606 126541 OR10H4 - OR19-28 HGNC:15388|Ensembl:ENSG00000176231|HPRD:14891|Vega:OTTHUMG00000182268 19 19p13.12 olfactory receptor, family 10, subfamily H, member 4 protein-coding OR10H4 olfactory receptor, family 10, subfamily H, member 4 O olfactory receptor 10H4|olfactory receptor OR19-28 20121230 -9606 126549 ANKLE1 - ANKRD41|LEM3|LEMD6 HGNC:26812|Ensembl:ENSG00000160117|HPRD:08801|Vega:OTTHUMG00000150839 19 19p13.11 ankyrin repeat and LEM domain containing 1 protein-coding ANKLE1 ankyrin repeat and LEM domain containing 1 O LEM domain containing 6|LEM-domain containing 3|LEM-domain containing protein 3|ankyrin repeat and LEM domain-containing protein 1|ankyrin repeat domain 41|ankyrin repeat domain-containing protein 41 20121230 -9606 126567 C2CD4C - FAM148C|KIAA1957|NLF3 HGNC:29417|MIM:610336|Ensembl:ENSG00000183186|Vega:OTTHUMG00000180534 19 19p13.3 C2 calcium-dependent domain containing 4C protein-coding C2CD4C C2 calcium-dependent domain containing 4C O C2 calcium-dependent domain-containing protein 4C|family with sequence similarity 148, member C|nuclear localized factor 3|nuclear-localized factor 3 20121230 -9606 126581 MRP63P1 - - HGNC:29686 1 1p13.1 mitochondrial ribosomal protein 63 pseudogene 1 pseudo MRP63P1 mitochondrial ribosomal protein 63 pseudogene 1 O - 20121230 -9606 126626 GABPB2 RP11-68I18.1 - HGNC:28441|Ensembl:ENSG00000143458|HPRD:14536|Vega:OTTHUMG00000012193 1 1q21.3 GA binding protein transcription factor, beta subunit 2 protein-coding GABPB2 GA binding protein transcription factor, beta subunit 2 O GA-binding protein subunit beta-2|GABP subunit beta-2|GABPB-2 20121230 -9606 126637 TCHHL1 - S100A17|THHL1|basalin HGNC:31796|Ensembl:ENSG00000182898|HPRD:18179|Vega:OTTHUMG00000013058 1 1q21.3 trichohyalin-like 1 protein-coding TCHHL1 trichohyalin-like 1 O S100 calcium binding protein A17|S100 calcium-binding protein A17|intermediate filament-associated protein|trichohyalin-like protein 1 20121230 -9606 126638 RPTN RP11-107M16.6 - HGNC:26809|MIM:613259|Ensembl:ENSG00000215853|Vega:OTTHUMG00000154095 1 1q21.3 repetin protein-coding RPTN repetin O intermediate filament-associated protein 20121230 -9606 126661 CCDC163P - C1orf231 HGNC:27003 1 1p34.1 coiled-coil domain containing 163, pseudogene pseudo CCDC163P coiled-coil domain containing 163, pseudogene O - 20121230 -9606 126668 TDRD10 RP11-61L14.3 - HGNC:25316|Ensembl:ENSG00000163239|HPRD:13196|Vega:OTTHUMG00000037264 1 1q21.3 tudor domain containing 10 protein-coding TDRD10 tudor domain containing 10 O tudor domain-containing protein 10 20121230 -9606 126669 SHE - RP11-350G8.8 HGNC:27004|MIM:610482|Ensembl:ENSG00000169291|HPRD:17293|Vega:OTTHUMG00000036072 1 1q21.3 Src homology 2 domain containing E protein-coding SHE Src homology 2 domain containing E O SH2 domain-containing adapter protein E 20121230 -9606 126695 C1orf172 - RP11-344H11.3 HGNC:26624|Ensembl:ENSG00000175707|HPRD:08754|Vega:OTTHUMG00000004272 1 1p36.11 chromosome 1 open reading frame 172 protein-coding C1orf172 chromosome 1 open reading frame 172 O uncharacterized protein C1orf172 20121230 -9606 126731 CCSAP RP4-803J11.3 C1orf96|CSAP HGNC:29578|Ensembl:ENSG00000154429|HPRD:14035|Vega:OTTHUMG00000037663 1 1q42.13 centriole, cilia and spindle-associated protein protein-coding CCSAP centriole, cilia and spindle-associated protein O centriole and spindle-associated protein 20121230 -9606 126755 LRRC38 - RP4-597A16.1 HGNC:27005|Ensembl:ENSG00000162494|Vega:OTTHUMG00000007918 1 1p36.21 leucine rich repeat containing 38 protein-coding LRRC38 leucine rich repeat containing 38 O BK channel auxilliary gamma subunit LRRC38|leucine-rich repeat-containing protein 38 20121230 -9606 126767 AADACL3 RP11-474O21.3 - HGNC:32037|Ensembl:ENSG00000188984|Vega:OTTHUMG00000001887 1 1p36.21 arylacetamide deacetylase-like 3 protein-coding AADACL3 arylacetamide deacetylase-like 3 O - 20121230 -9606 126789 PUSL1 - - HGNC:26914|Ensembl:ENSG00000169972|HPRD:08301|Vega:OTTHUMG00000003361 1 1p36.33 pseudouridylate synthase-like 1 protein-coding PUSL1 pseudouridylate synthase-like 1 O tRNA pseudouridine synthase-like 1|tRNA pseudouridylate synthase-like 1|tRNA-uridine isomerase-like 1 20121230 -9606 126792 B3GALT6 - beta3GalT6 HGNC:17978|Ensembl:ENSG00000176022|HPRD:12509|Vega:OTTHUMG00000001813 1 1p36.33 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 protein-coding B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 O GAG GalTII|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 6|beta-1,3-GalTase 6|beta-1,3-galactosyltransferase 6|beta3Gal-T6|galactosyltransferase II|galactosylxylosylprotein 3-beta-galactosyltransferase 20121230 -9606 126811 KRT8P21 - - HGNC:33373 1 1p31.1 keratin 8 pseudogene 21 pseudo KRT8P21 keratin 8 pseudogene 21 O - 20121230 -9606 126820 WDR63 - NYD-SP29|RP11-507C22.2 HGNC:30711|Ensembl:ENSG00000162643|HPRD:11409|Vega:OTTHUMG00000009953 1 1p22.3 WD repeat domain 63 protein-coding WDR63 WD repeat domain 63 O WD repeat-containing protein 63|testis development protein NYD-SP29 (NYD-SP29) 20121230 -9606 126823 KLHDC9 RP11-544M22.9 KARCA1 HGNC:28489|Ensembl:ENSG00000162755|HPRD:13751|Vega:OTTHUMG00000031479 1 1q23.3 kelch domain containing 9 protein-coding KLHDC9 kelch domain containing 9 O kelch domain-containing protein 9|kelch/ankyrin repeat-containing cyclin A1-interacting protein 20121230 -9606 126826 TGIF2P1 - - HGNC:33317 1 1q44 TGFB-induced factor homeobox 2 pseudogene 1 pseudo TGIF2P1 TGFB-induced factor homeobox 2 pseudogene 1 O - 20121230 -9606 126859 AXDND1 - C1orf125|RP11-215I23.2 HGNC:26564|Ensembl:ENSG00000162779|HPRD:08740|Vega:OTTHUMG00000035266 1 1q25.2 axonemal dynein light chain domain containing 1 protein-coding AXDND1 axonemal dynein light chain domain containing 1 O axonemal dynein light chain domain-containing protein 1 20121230 -9606 126860 LOC126860 - - - 1 1q25.2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 pseudogene pseudo - - - - 20121230 -9606 126868 MAB21L3 - C1orf161|RP5-1185H19.1 HGNC:26787|Ensembl:ENSG00000173212|HPRD:08245|Vega:OTTHUMG00000012110 1 1p13.1 mab-21-like 3 (C. elegans) protein-coding MAB21L3 mab-21-like 3 (C. elegans) O protein mab-21-like 3 20121230 -9606 126917 IFFO2 RP1-93P18.1 - HGNC:27006|Ensembl:ENSG00000169991|Vega:OTTHUMG00000002499 1 1p36.13 intermediate filament family orphan 2 protein-coding IFFO2 intermediate filament family orphan 2 O - 20121230 -9606 126961 HIST2H3C - H3|H3.2|H3/M|H3F2|H3FM|H3FN HGNC:20503|MIM:142780|Ensembl:ENSG00000203811|HPRD:11822|Vega:OTTHUMG00000012190 1 1q21.2 histone cluster 2, H3c protein-coding HIST2H3C histone cluster 2, H3c O H3 histone family, member M|H3 histone, family 2|histone 2, H3c|histone H3.2|histone H3/m 20121230 -9606 126969 SLC44A3 UNQ558/PRO1115 CTL3 HGNC:28689|Ensembl:ENSG00000143036|HPRD:14637|Vega:OTTHUMG00000010700 1 1p21.3 solute carrier family 44, member 3 protein-coding SLC44A3 solute carrier family 44, member 3 O choline transporter-like protein 3 20121230 -9606 126987 LOC126987 - - - 1 1p21.1 tight junction protein 3 (zona occludens 3) pseudogene pseudo - - - - 20121230 -9606 127002 ATXN7L2 - - HGNC:28713|Ensembl:ENSG00000162650|HPRD:12506|Vega:OTTHUMG00000011027 1 1p13.3 ataxin 7-like 2 protein-coding ATXN7L2 ataxin 7-like 2 O ataxin 7-like 1|ataxin-7-like protein 2 20121230 -9606 127003 C1orf194 RP5-1065J22.5 - HGNC:32331|Ensembl:ENSG00000179902|Vega:OTTHUMG00000011735 1 1p13.3 chromosome 1 open reading frame 194 protein-coding C1orf194 chromosome 1 open reading frame 194 O uncharacterized protein C1orf194 20121230 -9606 127011 LOC127011 - - - 1 1q31.3 ATPase, H+ transporting, lysosomal accessory protein 2 pseudogene pseudo - - - - 20121230 -9606 127018 LYPLAL1 - - HGNC:20440|Ensembl:ENSG00000143353|HPRD:14335|Vega:OTTHUMG00000037141 1 1q41 lysophospholipase-like 1 protein-coding LYPLAL1 lysophospholipase-like 1 O lysophospholipase-like protein 1 20121230 -9606 127059 OR2M5 RP11-230L4.2 OR2M5P HGNC:19576|Ensembl:ENSG00000162727|HPRD:14947|Vega:OTTHUMG00000040447 1 1q44 olfactory receptor, family 2, subfamily M, member 5 protein-coding OR2M5 olfactory receptor, family 2, subfamily M, member 5 O olfactory receptor 2M5|olfactory receptor, family 2, subfamily M, member 5 pseudogene 20121230 -9606 127062 OR2M3 - OR1-54|OR2M3P|OR2M6|OST003 HGNC:8269|Ensembl:ENSG00000228198|HPRD:14945|Vega:OTTHUMG00000040459 1 1q44 olfactory receptor, family 2, subfamily M, member 3 protein-coding OR2M3 olfactory receptor, family 2, subfamily M, member 3 O novel 7 transmembrane receptor (rhodopsin family) protein|olfactory receptor 2M3|olfactory receptor 2M6|olfactory receptor OR1-54|olfactory receptor, family 2, subfamily M, member 3 pseudogene|olfactory receptor, family 2, subfamily M, member 6 20121230 -9606 127064 OR2T12 - OR1-57 HGNC:19592|Ensembl:ENSG00000177201|HPRD:14951|Vega:OTTHUMG00000040457 1 1q44 olfactory receptor, family 2, subfamily T, member 12 protein-coding OR2T12 olfactory receptor, family 2, subfamily T, member 12 O novel 7 transmembrane receptor (rhodopsin family) protein|olfactory receptor 2T12|olfactory receptor OR1-57 20121230 -9606 127066 OR14C36 - OR5BF1 HGNC:15026|Ensembl:ENSG00000177174|HPRD:17754|Vega:OTTHUMG00000040463 1 1q44 olfactory receptor, family 14, subfamily C, member 36 protein-coding OR14C36 olfactory receptor, family 14, subfamily C, member 36 O olfactory receptor 14C36|olfactory receptor 5BF1|olfactory receptor OR1-59|olfactory receptor, family 5, subfamily BF, member 1 20121230 -9606 127068 OR2T34 - - HGNC:31256|Ensembl:ENSG00000183310|HPRD:14954|Vega:OTTHUMG00000040387 1 1q44 olfactory receptor, family 2, subfamily T, member 34 protein-coding OR2T34 olfactory receptor, family 2, subfamily T, member 34 O olfactory receptor 2T34|olfactory receptor OR1-63 20121230 -9606 127069 OR2T10 - OR1-64 HGNC:19573|Ensembl:ENSG00000184022|HPRD:14950|Vega:OTTHUMG00000040388 1 1q44 olfactory receptor, family 2, subfamily T, member 10 protein-coding OR2T10 olfactory receptor, family 2, subfamily T, member 10 O olfactory receptor 2T10|olfactory receptor OR1-64 20121230 -9606 127074 OR2T4 - OR1-60|OR2T4Q HGNC:15016|Ensembl:ENSG00000196944|HPRD:14955|Vega:OTTHUMG00000040453 1 1q44 olfactory receptor, family 2, subfamily T, member 4 protein-coding OR2T4 olfactory receptor, family 2, subfamily T, member 4 O olfactory receptor 2T4|olfactory receptor OR1-60 20121230 -9606 127077 OR2T11 - OR2T11Q HGNC:19574|Ensembl:ENSG00000183130|HPRD:17705|Vega:OTTHUMG00000040384 1 1q44 olfactory receptor, family 2, subfamily T, member 11 protein-coding OR2T11 olfactory receptor, family 2, subfamily T, member 11 O olfactory receptor 2T11|olfactory receptor OR1-65 20121230 -9606 127086 LOC127086 - - - 1 1q41 X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene pseudo - - - - 20121230 -9606 127099 RPLP1P3 - RPLP1_1_124 HGNC:36870 1 1q24.3 ribosomal protein, large, P1 pseudogene 3 pseudo RPLP1P3 ribosomal protein, large, P1 pseudogene 3 O - 20121230 -9606 127124 ATP6V1G3 - ATP6G3|Vma10 HGNC:18265|Ensembl:ENSG00000151418|HPRD:16526|Vega:OTTHUMG00000035661 1 1q31.3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 protein-coding ATP6V1G3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 O ATPase, H+ transporting, lysosomal (vacuolar proton pump) subunit G3|V-ATPase 13 kDa subunit 3|V-ATPase G subunit 3|V-ATPase G3 subunit|V-ATPase subunit G 3|V-type proton ATPase subunit G 3|vacuolar ATP synthase subunit G 3|vacuolar proton pump G subunit 3|vacuolar proton pump subunit G 3|vacuolar proton pump, subunit G3 20121230 -9606 127247 ASB17 - Asb-17 HGNC:19769|Ensembl:ENSG00000154007|HPRD:10671|Vega:OTTHUMG00000009787 1 1p31.1 ankyrin repeat and SOCS box containing 17 protein-coding ASB17 ankyrin repeat and SOCS box containing 17 O ankyrin repeat and SOCS box protein 17|ankyrin repeat and SOCS box-containing 17 20121230 -9606 127253 TYW3 - C1orf171 HGNC:24757|MIM:611245|Ensembl:ENSG00000162623|HPRD:14036|Vega:OTTHUMG00000009641 1 1p31.1 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) protein-coding TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) O tRNA wybutosine-synthesizing protein 3 homolog|tRNA-yW-synthesizing protein 3 20121230 -9606 127254 C1orf173 - RP11-653A5.1 HGNC:25346|Ensembl:ENSG00000178965|HPRD:16816|Vega:OTTHUMG00000009622 1 1p31.1 chromosome 1 open reading frame 173 protein-coding C1orf173 chromosome 1 open reading frame 173 O uncharacterized protein C1orf173 20121230 -9606 127255 LRRIQ3 - LRRC44 HGNC:28318|Ensembl:ENSG00000162620|HPRD:14485|Vega:OTTHUMG00000009508 1 1p31.1 leucine-rich repeats and IQ motif containing 3 protein-coding LRRIQ3 leucine-rich repeats and IQ motif containing 3 O leucine rich repeat containing 44|leucine-rich repeat and IQ domain-containing protein 3|leucine-rich repeat-containing protein 44 20121230 -9606 127262 TPRG1L - FAM79A|RP11-46F15.3|h-mover|mover HGNC:27007|MIM:611460|Ensembl:ENSG00000158109|HPRD:14037|Vega:OTTHUMG00000000609 1 1p36.32 tumor protein p63 regulated 1-like protein-coding TPRG1L tumor protein p63 regulated 1-like O family with sequence similarity 79, member A|mossy fiber terminal-associated vertebrate-specific presynaptic protein|tumor protein p63-regulated gene 1-like protein 20121230 -9606 127281 FAM213B RP3-395M20.10 C1orf93 HGNC:28390|Ensembl:ENSG00000157870|HPRD:14513|Vega:OTTHUMG00000000847 1 1p36.32 family with sequence similarity 213, member B protein-coding FAM213B family with sequence similarity 213, member B O prostamide/PG F synthase|prostamide/PGF synthase|prostamide/prostaglandin F synthase 20121230 -9606 127294 MYOM3 - RP11-293P20.1 HGNC:26679|Ensembl:ENSG00000142661|HPRD:08200|Vega:OTTHUMG00000002969 1 1p36.11 myomesin 3 protein-coding MYOM3 myomesin 3 O myomesin family, member 3|myomesin-3 20121230 -9606 127295 RPL36P5 - RPL36_1_21 HGNC:35567 1 1p36.11 ribosomal protein L36 pseudogene 5 pseudo RPL36P5 ribosomal protein L36 pseudogene 5 O - 20121230 -9606 127343 DMBX1 - MBX|OTX3|PAXB HGNC:19026|MIM:607410|Ensembl:ENSG00000197587|HPRD:07593|Vega:OTTHUMG00000007982 1 1p33 diencephalon/mesencephalon homeobox 1 protein-coding DMBX1 diencephalon/mesencephalon homeobox 1 O diencephalon/mesencephalon homeobox protein 1|homeoprotein MBX|orthodenticle homolog 3|paired-like homeobox protein DMBX1 20121230 -9606 127385 OR10J5 - OR1-28 HGNC:14993|Ensembl:ENSG00000184155|HPRD:14892|Vega:OTTHUMG00000022738 1 1q23.2 olfactory receptor, family 10, subfamily J, member 5 protein-coding OR10J5 olfactory receptor, family 10, subfamily J, member 5 O olfactory receptor 10J5|olfactory receptor OR1-28 20121230 -9606 127391 TMCO2 - dJ39G22.2 HGNC:23312|Ensembl:ENSG00000188800|HPRD:18369|Vega:OTTHUMG00000005764 1 1p34.2 transmembrane and coiled-coil domains 2 protein-coding TMCO2 transmembrane and coiled-coil domains 2 O dJ39G22.2 (novel protein)|transmembrane and coiled-coil domain-containing protein 2 20121230 -9606 127396 ZNF684 RP1-63P18.1 - HGNC:28418|Ensembl:ENSG00000117010|HPRD:11328|Vega:OTTHUMG00000007359 1 1p34.2 zinc finger protein 684 protein-coding ZNF684 zinc finger protein 684 O hypothetical protein MGC27466 20121230 -9606 127406 RPSAP20 - RPSA_1_53 HGNC:35595 1 1p32.2 ribosomal protein SA pseudogene 20 pseudo RPSAP20 ribosomal protein SA pseudogene 20 O - 20121230 -9606 127428 TCEANC2 - C1orf83|RP4-758J24.3 HGNC:26494|Ensembl:ENSG00000116205|HPRD:08722|Vega:OTTHUMG00000008434 1 1p32.3 transcription elongation factor A (SII) N-terminal and central domain containing 2 protein-coding TCEANC2 transcription elongation factor A (SII) N-terminal and central domain containing 2 O transcription elongation factor A N-terminal and central domain-containing protein 2 20121230 -9606 127435 PODN UNQ293/PRO332 PCAN|SLRR5A HGNC:23174|MIM:608661|Ensembl:ENSG00000174348|HPRD:10557|Vega:OTTHUMG00000008934 1 1p32.3 podocan protein-coding PODN podocan O podocan proteoglycan 20121230 -9606 127481 S100A7P1 - S100A7L3|s100a7d HGNC:21654 1 1q21.3 S100 calcium binding protein A7 pseudogene 1 pseudo S100A7P1 S100 calcium binding protein A7 pseudogene 1 O - 20121230 -9606 127495 LRRC39 RP11-305E17.2 - HGNC:28228|Ensembl:ENSG00000122477|HPRD:17501|Vega:OTTHUMG00000010839 1 1p21.2 leucine rich repeat containing 39 protein-coding LRRC39 leucine rich repeat containing 39 O densin hlg|leucine-rich repeat-containing protein 39 20121230 -9606 127534 GJB4 - CX30.3|EKV HGNC:4286|MIM:605425|Ensembl:ENSG00000189433|HPRD:05666|Vega:OTTHUMG00000004052 1 1p34.3 gap junction protein, beta 4, 30.3kDa protein-coding GJB4 gap junction protein, beta 4, 30.3kDa O connexin 30.3|connexin-30.3|gap junction beta-4 protein 20121230 -9606 127540 HMGB4 - dJ1007G16.5 HGNC:24954|Ensembl:ENSG00000176256|HPRD:14038|Vega:OTTHUMG00000013143 1 1p35.1 high mobility group box 4 protein-coding HMGB4 high mobility group box 4 O HMG2 like|high mobility group protein B4 20121230 -9606 127544 RNF19B - IBRDC3|NKLAM HGNC:26886|MIM:610872|Ensembl:ENSG00000116514|HPRD:13725|Vega:OTTHUMG00000004013 1 1p35.1 ring finger protein 19B protein-coding RNF19B ring finger protein 19B O E3 ubiquitin-protein ligase RNF19B|IBR domain containing 3|IBR domain-containing protein 3|natural killer lytic-associated molecule 20121230 -9606 127545 RPL18AP4 hCG_1641703 RPL18A_2_30 HGNC:36556 1 1p35.1 ribosomal protein L18a pseudogene 4 pseudo RPL18AP4 ribosomal protein L18a pseudogene 4 O - 20121230 -9606 127550 A3GALT2P RP11-415J8.2 A3GALT2|IGBS3S HGNC:30005 1 1p35.1 alpha 1,3-galactosyltransferase 2, pseudogene pseudo A3GALT2P alpha 1,3-galactosyltransferase 2, pseudogene O - 20121230 -9606 127579 DCST2 RP11-307C12.4 - HGNC:26562|Ensembl:ENSG00000163354|HPRD:08739|Vega:OTTHUMG00000037371 1 1q22 DC-STAMP domain containing 2 protein-coding DCST2 DC-STAMP domain containing 2 O DC-STAMP domain-containing protein 2 20121230 -9606 127602 DNAH14 RP11-328N1.1 C1orf67|Dnahc14|HL-18|HL18 HGNC:2945|MIM:603341|Ensembl:ENSG00000185842|Vega:OTTHUMG00000037447 1 1q42.12 dynein, axonemal, heavy chain 14 protein-coding DNAH14 dynein, axonemal, heavy chain 14 O axonemal beta dynein heavy chain 14|ciliary dynein heavy chain 14|dynein heavy chain 14, axonemal|dynein, axonemal, heavy polypeptide 14 20121230 -9606 127608 OR2AJ1 - OR2AJ1P|OR2AJ1Q HGNC:15001 1 1q44 olfactory receptor, family 2, subfamily AJ, member 1 pseudo OR2AJ1 olfactory receptor, family 2, subfamily AJ, member 1 O - 20121230 -9606 127617 OR14L1P RP11-978I15.6 OR1-35|OR1-36|OR5AV1|OR5AV1P HGNC:15023 1 1q44 olfactory receptor, family 14, subfamily L, member 1 pseudogene pseudo OR14L1P olfactory receptor, family 14, subfamily L, member 1 pseudogene O - 20121230 -9606 127623 OR2B11 RP11-978I15.1 - HGNC:31249|Ensembl:ENSG00000177535|HPRD:14937|Vega:OTTHUMG00000040572 1 1q44 olfactory receptor, family 2, subfamily B, member 11 protein-coding OR2B11 olfactory receptor, family 2, subfamily B, member 11 O novel 7 transmembrane receptor (rhodopsin family) protein|olfactory receptor 2B11 20121230 -9606 127665 ZNF648 - - HGNC:18190|Ensembl:ENSG00000179930|HPRD:18361|Vega:OTTHUMG00000037302 1 1q25.3 zinc finger protein 648 protein-coding ZNF648 zinc finger protein 648 O - 20121230 -9606 127670 TEDDM1 - EDDM9|Epdd1|HE9|RP1-223H12.2|TMEM45C HGNC:30233|Ensembl:ENSG00000203730|HPRD:13642|Vega:OTTHUMG00000037398 1 1q25.3 transmembrane epididymal protein 1 protein-coding TEDDM1 transmembrane epididymal protein 1 O epididymal protein 9|human epididymis-specific protein 9|putative membrane protein HE9|transmembrane protein 45C 20121230 -9606 127671 TEDDM1P1 - - HGNC:42447 1 1q25.3 transmembrane epididymal protein 1 pseudogene 1 pseudo TEDDM1P1 transmembrane epididymal protein 1 pseudogene 1 O - 20121230 -9606 127687 C1orf122 RP11-109P14.5 ALAESM HGNC:24789|Ensembl:ENSG00000197982|HPRD:13508|Vega:OTTHUMG00000004319 1 1p34.3 chromosome 1 open reading frame 122 protein-coding C1orf122 chromosome 1 open reading frame 122 O uncharacterized protein C1orf122 20121230 -9606 127700 OSCP1 - C1orf102|NOR1 HGNC:29971|MIM:608854|Ensembl:ENSG00000116885|HPRD:16393|Vega:OTTHUMG00000008139 1 1p34.3 organic solute carrier partner 1 protein-coding OSCP1 organic solute carrier partner 1 O hOSCP1|organic solute carrier protein 1|organic solute transport protein 1|oxidored nitro domain containing protein|oxidored-nitro domain-containing protein 1|protein OSCP1 20121230 -9606 127703 C1orf216 - - HGNC:26800|Ensembl:ENSG00000142686|HPRD:08798|Vega:OTTHUMG00000004167 1 1p34.3 chromosome 1 open reading frame 216 protein-coding C1orf216 chromosome 1 open reading frame 216 O UPF0500 protein C1orf216 20121230 -9606 127707 KLHDC7A - RP11-422P22.2 HGNC:26791|Ensembl:ENSG00000179023|HPRD:08246|Vega:OTTHUMG00000002431 1 1p36.13 kelch domain containing 7A protein-coding KLHDC7A kelch domain containing 7A O kelch domain-containing protein 7A 20121230 -9606 127731 VWA5B1 - - HGNC:26538|Ensembl:ENSG00000158816|HPRD:08732|Vega:OTTHUMG00000002835 1 1p36.12 von Willebrand factor A domain containing 5B1 protein-coding VWA5B1 von Willebrand factor A domain containing 5B1 O von Willebrand factor A domain-containing protein 5B1 20121230 -9606 127733 UBXN10 - UBXD3 HGNC:26354|Ensembl:ENSG00000162543|HPRD:18255|Vega:OTTHUMG00000002708 1 1p36.12 UBX domain protein 10 protein-coding UBXN10 UBX domain protein 10 O UBX domain containing 3|UBX domain-containing protein 10|UBX domain-containing protein 3 20121230 -9606 127795 C1orf87 - - HGNC:28547|Ensembl:ENSG00000162598|HPRD:11338|Vega:OTTHUMG00000008992 1 1p32.1 chromosome 1 open reading frame 87 protein-coding C1orf87 chromosome 1 open reading frame 87 O uncharacterized protein C1orf87 20121230 -9606 127829 ARL8A - ARL10B|GIE2 HGNC:25192|Ensembl:ENSG00000143862|HPRD:09807|Vega:OTTHUMG00000035923 1 1q32.1 ADP-ribosylation factor-like 8A protein-coding ARL8A ADP-ribosylation factor-like 8A O ADP-ribosylation factor-like 10B|ADP-ribosylation factor-like protein 8A|novel small G protein indispensable for equal chromosome segregation 2 20121230 -9606 127833 SYT2 - SytII HGNC:11510|MIM:600104|Ensembl:ENSG00000143858|HPRD:02520|Vega:OTTHUMG00000041388 1 1q32.1 synaptotagmin II protein-coding SYT2 synaptotagmin II O synaptotagmin 2|synaptotagmin-2 20121230 -9606 127841 LINC00628 - - HGNC:27008 1 1q32.1 long intergenic non-protein coding RNA 628 miscRNA LINC00628 long intergenic non-protein coding RNA 628 O - 20121230 -9606 127845 GOLT1A - CGI-141|GOT1|HMFN1187|RP11-203F10.3|YMR292W HGNC:24766|Ensembl:ENSG00000174567|HPRD:13465|Vega:OTTHUMG00000036056 1 1q32.1 golgi transport 1A protein-coding GOLT1A golgi transport 1A O hGOT1b|putative protein product of HMFN1187|vesicle transport protein GOT1A 20121230 -9606 127933 UHMK1 - KIS|KIST HGNC:19683|MIM:608849|Ensembl:ENSG00000152332|HPRD:12318|Vega:OTTHUMG00000031373 1 1q23.3 U2AF homology motif (UHM) kinase 1 protein-coding UHMK1 U2AF homology motif (UHM) kinase 1 O KIS protein kinase|kinase interacting with leukemia-associated gene (stathmin)|serine/threonine-protein kinase Kist 20121230 -9606 127943 FCRLB RP11-474I16.6 FCRL2|FCRLM2|FCRLY|FREB-2|FcRY HGNC:26431|MIM:609251|Ensembl:ENSG00000162746|HPRD:08093|Vega:OTTHUMG00000133629 1 1q23.3 Fc receptor-like B protein-coding FCRLB Fc receptor-like B O Fc receptor homolog expressed in B-cells protein 2|Fc receptor like 2|Fc receptor-like and mucin-like 2|fc receptor homolog expressed in B cells protein 2|fc receptor-like and mucin-like protein 2|fc receptor-like protein 2|fc receptor-related protein Y 20121230 -9606 128025 WDR64 RP11-543A11.1 - HGNC:26570|Ensembl:ENSG00000162843|HPRD:13412 1 1q43 WD repeat domain 64 protein-coding WDR64 WD repeat domain 64 O WD repeat-containing protein 64 20121230 -9606 128061 C1orf131 RP4-609B14.1 - HGNC:25332|Ensembl:ENSG00000143633|HPRD:13204|Vega:OTTHUMG00000038023 1 1q42.2 chromosome 1 open reading frame 131 protein-coding C1orf131 chromosome 1 open reading frame 131 O uncharacterized protein C1orf131 20121230 -9606 128077 LIX1L - - HGNC:28715|Ensembl:ENSG00000152022|HPRD:14653|Vega:OTTHUMG00000013741 1 1q21.1 Lix1 homolog (mouse)-like protein-coding LIX1L Lix1 homolog (mouse)-like O LIX1-like protein 20121230 -9606 128102 HSD3BP4 - - HGNC:5222 1 1p13.1 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 pseudo HSD3BP4 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 O - 20121230 -9606 128136 LOC128136 - - - 1 1q43 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) pseudogene pseudo - - - - 20121230 -9606 128153 SPATA17 - IQCH|MSRG-11|MSRG11|RP11-144C20.1 HGNC:25184|MIM:611032|Ensembl:ENSG00000162814|HPRD:14039|Vega:OTTHUMG00000037875 1 1q41 spermatogenesis associated 17 protein-coding SPATA17 spermatogenesis associated 17 O IQ motif containing H|spermatogenesis-associated protein 17|spermatogenesis-related protein 11 20121230 -9606 128178 EDARADD RP4-670F13.1 ECTD11A|ECTD11B|ED3|EDA3 HGNC:14341|MIM:606603|Ensembl:ENSG00000186197|HPRD:05965|Vega:OTTHUMG00000039954 1 1q42.3 EDAR-associated death domain protein-coding EDARADD EDAR-associated death domain O EDAR-associated death domain protein|crinkled homolog|ectodysplasia A receptor associated death domain|ectodysplasin A receptor associated adapter protein|ectodysplasin-A receptor-associated adapter protein 20121230 -9606 128192 LOC128192 - - - 1 1p34.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 128209 KLF17 RP4-675G8.1 ZNF393|Zfp393 HGNC:18830|MIM:609602|Ensembl:ENSG00000171872|HPRD:08272|Vega:OTTHUMG00000009664 1 1p34.1 Kruppel-like factor 17 protein-coding KLF17 Kruppel-like factor 17 O Krueppel-like factor 17|novel zinc-finger protein|zinc finger protein 393 20121230 -9606 128218 TMEM125 - - HGNC:28275|Ensembl:ENSG00000179178|HPRD:14457|Vega:OTTHUMG00000007288 1 1p34.2 transmembrane protein 125 protein-coding TMEM125 transmembrane protein 125 O - 20121230 -9606 128229 TSACC - C1orf182|RP11-443G18.5|SIP|SSTK-IP HGNC:30636|Ensembl:ENSG00000163467|HPRD:10252|Vega:OTTHUMG00000024060 1 1q22 TSSK6 activating co-chaperone protein-coding TSACC TSSK6 activating co-chaperone O SSTK-interacting protein (SSTK-IP)|TSSK6-activating co-chaperone protein 20121230 -9606 128239 IQGAP3 - - HGNC:20669|Ensembl:ENSG00000183856|HPRD:11051|Vega:OTTHUMG00000033114 1 1q21.3 IQ motif containing GTPase activating protein 3 protein-coding IQGAP3 IQ motif containing GTPase activating protein 3 O ras GTPase-activating-like protein IQGAP3 20121230 -9606 128240 APOA1BP RP11-284F21.3 AIBP|YJEFN1 HGNC:18453|MIM:608862|Ensembl:ENSG00000163382|HPRD:16397|Vega:OTTHUMG00000033206 1 1q21 apolipoprotein A-I binding protein protein-coding APOA1BP apolipoprotein A-I binding protein O AI-BP|NAD(P)H-hydrate epimerase|NAD(P)HX epimerase|apoA-I binding protein|apolipoprotein A-I-binding protein|yjeF N-terminal domain-containing protein 1|yjeF_N1 20121230 -9606 128272 ARHGEF19 RP4-733M16.1 WGEF HGNC:26604|MIM:612496|Ensembl:ENSG00000142632|HPRD:10659|Vega:OTTHUMG00000002219 1 1p36.13 Rho guanine nucleotide exchange factor (GEF) 19 protein-coding ARHGEF19 Rho guanine nucleotide exchange factor (GEF) 19 O ephexin-2|rho guanine nucleotide exchange factor 19|weakly similar to Rho GEF 20121230 -9606 128308 MRPL55 UNQ5835/PRO19675 AAVG5835|L55nt|MRP-L55|PRO19675 HGNC:16686|MIM:611859|Ensembl:ENSG00000162910|HPRD:14773|Vega:OTTHUMG00000037965 1 1q42.13 mitochondrial ribosomal protein L55 protein-coding MRPL55 mitochondrial ribosomal protein L55 O 39S ribosomal protein L55, mitochondrial|L55mt 20121230 -9606 128312 HIST3H2BB - - HGNC:20514|Ensembl:ENSG00000196890|HPRD:13661|Vega:OTTHUMG00000040045 1 1q42.13 histone cluster 3, H2bb protein-coding HIST3H2BB histone cluster 3, H2bb O H2B type 12|histone 3, H2bb|histone H2B type 3-B 20121230 -9606 128322 LOC128322 - - - 1 1p13.2 nuclear transport factor 2-like protein-coding - - - - 20121209 -9606 128338 DRAM2 PSEC0031 PRO180|RP5-1180E21.1|TMEM77|WWFQ154 HGNC:28769|MIM:613360|Ensembl:ENSG00000156171|HPRD:14685|Vega:OTTHUMG00000011911 1 1p13.3 DNA-damage regulated autophagy modulator 2 protein-coding DRAM2 DNA-damage regulated autophagy modulator 2 O DNA damage-regulated autophagy modulator protein 2|damage regulated autophagy modulator 2|transmembrane protein 77 20121230 -9606 128344 PIFO RP5-1125M8.4 C1orf88|pitchfork HGNC:27009|MIM:614234|Ensembl:ENSG00000173947|HPRD:14040|Vega:OTTHUMG00000011168 1 1p13.2 primary cilia formation protein-coding PIFO primary cilia formation O protein pitchfork 20121230 -9606 128346 C1orf162 - - HGNC:28344|Ensembl:ENSG00000143110|HPRD:14495|Vega:OTTHUMG00000011750 1 1p13.2 chromosome 1 open reading frame 162 protein-coding C1orf162 chromosome 1 open reading frame 162 O transmembrane protein C1orf162 20121230 -9606 128360 OR10T2 - OR1-3 HGNC:14816|Ensembl:ENSG00000186306|HPRD:14896|Vega:OTTHUMG00000017521 1 1q23.1 olfactory receptor, family 10, subfamily T, member 2 protein-coding OR10T2 olfactory receptor, family 10, subfamily T, member 2 O olfactory receptor 10T2|olfactory receptor OR1-3 20121230 -9606 128366 OR6P1 RP11-317F9.1 - HGNC:15036|Ensembl:ENSG00000186440|Vega:OTTHUMG00000019633 1 1q23.1 olfactory receptor, family 6, subfamily P, member 1 protein-coding OR6P1 olfactory receptor, family 6, subfamily P, member 1 O olfactory receptor 6P1|olfactory receptor OR1-12|seven transmembrane helix receptor 20121230 -9606 128367 OR10X1 - OR1-13|OR1-14|OR10X1P HGNC:14995|Ensembl:ENSG00000186400|HPRD:14897|Vega:OTTHUMG00000019635 1 1q23.1 olfactory receptor, family 10, subfamily X, member 1 protein-coding OR10X1 olfactory receptor, family 10, subfamily X, member 1 O olfactory receptor 10X1|olfactory receptor OR1-13 pseudogene|olfactory receptor OR1-14|olfactory receptor, family 10, subfamily X, member 1 pseudogene 20121230 -9606 128368 OR10Z1 - OR1-15 HGNC:14996|Ensembl:ENSG00000198967|HPRD:14898|Vega:OTTHUMG00000019637 1 1q23.1 olfactory receptor, family 10, subfamily Z, member 1 protein-coding OR10Z1 olfactory receptor, family 10, subfamily Z, member 1 O olfactory receptor 10Z1|olfactory receptor OR1-15 20121230 -9606 128370 OR6K4P hCG_39951 - HGNC:15031 1 1q23.1 olfactory receptor, family 6, subfamily K, member 4 pseudogene pseudo OR6K4P olfactory receptor, family 6, subfamily K, member 4 pseudogene O - 20121230 -9606 128371 OR6K6 - OR1-21 HGNC:15033|Ensembl:ENSG00000180433|HPRD:17778|Vega:OTTHUMG00000022772 1 1q23.1 olfactory receptor, family 6, subfamily K, member 6 protein-coding OR6K6 olfactory receptor, family 6, subfamily K, member 6 O olfactory receptor 6K6|olfactory receptor OR1-21 20121230 -9606 128372 OR6N1 - OR1-22 HGNC:15034|Ensembl:ENSG00000197403|HPRD:15066|Vega:OTTHUMG00000022774 1 1q23.1 olfactory receptor, family 6, subfamily N, member 1 protein-coding OR6N1 olfactory receptor, family 6, subfamily N, member 1 O olfactory receptor 6N1|olfactory receptor OR1-22 20121230 -9606 128387 TATDN3 - - HGNC:27010|Ensembl:ENSG00000203705|Vega:OTTHUMG00000036805 1 1q32.3 TatD DNase domain containing 3 protein-coding TATDN3 TatD DNase domain containing 3 O putative deoxyribonuclease TATDN3 20121230 -9606 128408 BHLHE23 - BETA4|BHLHB4|bA305P22.3 HGNC:16093|MIM:609331|Ensembl:ENSG00000125533|HPRD:16550|Vega:OTTHUMG00000032948 20 20q13.33 basic helix-loop-helix family, member e23 protein-coding BHLHE23 basic helix-loop-helix family, member e23 O basic helix-loop-helix domain containing, class B, 4|class B basic helix-loop-helix protein 4|class E basic helix-loop-helix protein 23 20121230 -9606 128414 NKAIN4 RP11-261N11.9 C20orf58|FAM77A|bA261N11.2 HGNC:16191|MIM:612873|Ensembl:ENSG00000101198|HPRD:12776|Vega:OTTHUMG00000032959 20 20q13.33 Na+/K+ transporting ATPase interacting 4 protein-coding NKAIN4 Na+/K+ transporting ATPase interacting 4 O Na(+)/K(+)-transporting ATPase subunit beta-1-interacting protein 4|sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4 20121230 -9606 128434 VSTM2L RP5-1118M15.2 C20orf102|dJ1118M15.2 HGNC:16096|Ensembl:ENSG00000132821|HPRD:12735|Vega:OTTHUMG00000032430 20 20q11.23 V-set and transmembrane domain containing 2 like protein-coding VSTM2L V-set and transmembrane domain containing 2 like O V-set and transmembrane domain-containing protein 2-like protein 20121230 -9606 128439 SNHG11 - C20orf198|LINC00101|NCRNA00101 HGNC:25046|HPRD:11814 20 20q11.23 small nucleolar RNA host gene 11 (non-protein coding) miscRNA SNHG11 small nucleolar RNA host gene 11 (non-protein coding) O - 20121230 -9606 128467 RPL12P11 - RPL12L2|RPL12_22_1703|dJ661I20.1 HGNC:15835 20 20q12 ribosomal protein L12 pseudogene 11 pseudo RPL12P11 ribosomal protein L12 pseudogene 11 O - 20121230 -9606 128481 RPL27AP - dJ1028D15.2 HGNC:16250 20 20q13.12 ribosomal protein L27a pseudogene pseudo RPL27AP ribosomal protein L27a pseudogene O - 20121230 -9606 128486 FITM2 - C20orf142|Fit2|dJ881L22.2 HGNC:16135|MIM:612029|Ensembl:ENSG00000197296|Vega:OTTHUMG00000032522 20 20q13.12 fat storage-inducing transmembrane protein 2 protein-coding FITM2 fat storage-inducing transmembrane protein 2 O fat inducing transcript 2|fat-inducing protein 2|fat-inducing transcript 2 20121230 -9606 128488 WFDC12 UNQ544/PRO844 C20orf122|SWAM2|WAP2|dJ211D12.4 HGNC:16115|MIM:609872|Ensembl:ENSG00000168703|HPRD:15674|Vega:OTTHUMG00000046412 20 20q13.12 WAP four-disulfide core domain 12 protein-coding WFDC12 WAP four-disulfide core domain 12 O WAP four-disulfide core domain protein 12|protease inhibitor WAP2|putative protease inhibitor WAP12|single WAP motif protein 2|whey acidic protein 2 20121230 -9606 128497 SPATA25 - C20orf165|TSG23|dJ337O18.8 HGNC:16158|Ensembl:ENSG00000149634|HPRD:12754|Vega:OTTHUMG00000032628 20 20q13.12 spermatogenesis associated 25 protein-coding SPATA25 spermatogenesis associated 25 O spermatogenesis-associated protein 25|testis-specific gene 23 protein 20121230 -9606 128500 RPL13P2 - RPL13P3|RPL13_7_1707|dJ599F21.2 HGNC:16342 20 20q13.12 ribosomal protein L13 pseudogene 2 pseudo RPL13P2 ribosomal protein L13 pseudogene 2 O - 20121230 -9606 128506 OCSTAMP RP1-257E24.2 C20orf123|OC-STAMP|dJ257E24.3 HGNC:16116|Ensembl:ENSG00000149635|Vega:OTTHUMG00000032652 20 20q13.12 osteoclast stimulatory transmembrane protein protein-coding OCSTAMP osteoclast stimulatory transmembrane protein O transmembrane protein C20orf123 20121230 -9606 128553 TSHZ2 RP5-823G15.3 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 HGNC:13010|MIM:614118|Ensembl:ENSG00000182463|HPRD:10730|Vega:OTTHUMG00000033058 20 20q13.2 teashirt zinc finger homeobox 2 protein-coding TSHZ2 teashirt zinc finger homeobox 2 O cell growth-inhibiting protein 7|ovarian cancer-related protein 10-2|serologically defined colon cancer antigen 33 like|teashirt family zinc finger 2|teashirt homolog 2|zinc finger protein 218 20121230 -9606 128580 RPS4XP3 - RPS4L|RPS4P3|dJ843L14.2 HGNC:16251 20 20q13.31 ribosomal protein S4X pseudogene 3 pseudo RPS4XP3 ribosomal protein S4X pseudogene 3 O - 20121230 -9606 128602 C20orf85 - LLC1|bA196N14.1 HGNC:16216|Ensembl:ENSG00000124237|HPRD:12787|Vega:OTTHUMG00000032836 20 20q13.32 chromosome 20 open reading frame 85 protein-coding C20orf85 chromosome 20 open reading frame 85 O low in lung cancer 1|uncharacterized protein C20orf85 20121230 -9606 128609 MRPS16P2 - MRPS16P|bA379F14.1 HGNC:16541 20 20q13.32 mitochondrial ribosomal protein S16 pseudogene 2 pseudo MRPS16P2 mitochondrial ribosomal protein S16 pseudogene 2 O - 20121230 -9606 128611 ZNF831 - C20orf174|dJ492J12.1 HGNC:16167|Ensembl:ENSG00000124203|Vega:OTTHUMG00000032864 20 20q13.32 zinc finger protein 831 protein-coding ZNF831 zinc finger protein 831 O - 20121230 -9606 128615 PIEZO1P1 - C20orf83|FAM38CP|bA164D18.1 HGNC:16214 20 20q13.32 piezo-type mechanosensitive ion channel component 1 pseudogene 1 pseudo PIEZO1P1 piezo-type mechanosensitive ion channel component 1 pseudogene 1 O - 20121230 -9606 128637 TBC1D20 RP5-852M4.5 C20orf140 HGNC:16133|MIM:611663|Ensembl:ENSG00000125875|HPRD:15472|Vega:OTTHUMG00000031637 20 20p13 TBC1 domain family, member 20 protein-coding TBC1D20 TBC1 domain family, member 20 O TBC1 domain family member 20 20121230 -9606 128646 SIRPD RP4-576H24.3 PTPNS1L2|dJ576H24.4 HGNC:16248|Ensembl:ENSG00000125900|HPRD:17931|Vega:OTTHUMG00000031674 20 20p13 signal-regulatory protein delta protein-coding SIRPD signal-regulatory protein delta O SIRP-delta|protein tyrosine phosphatase non-receptor type substrate 1-like 2|protein tyrosine phosphatase, non-receptor type substrate 1-like 2 20121230 -9606 128653 C20orf141 RP5-860F19.6 dJ860F19.4 HGNC:16134|Ensembl:ENSG00000258713|HPRD:12748|Vega:OTTHUMG00000031707 20 20p13 chromosome 20 open reading frame 141 protein-coding C20orf141 chromosome 20 open reading frame 141 O uncharacterized protein C20orf141 20121230 -9606 128668 RPL7AP12 - RPL7AL2|dJ189G13.1 HGNC:16562 20 20p13 ribosomal protein L7a pseudogene 12 pseudo RPL7AP12 ribosomal protein L7a pseudogene 12 O - 20121230 -9606 128674 PROKR2 - GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 HGNC:15836|MIM:607123|Ensembl:ENSG00000101292|HPRD:08453|Vega:OTTHUMG00000031800 20 20p12.3 prokineticin receptor 2 protein-coding PROKR2 prokineticin receptor 2 O G protein-coupled receptor 73-like 1|PK-R2 20121230 -9606 128676 RPS18P1 - RPS18_9_1682|dJ1022P6.1 HGNC:16550 20 20p12.3 ribosomal protein S18 pseudogene 1 pseudo RPS18P1 ribosomal protein S18 pseudogene 1 O - 20121230 -9606 128709 RPL23AP6 - RPL23A_36_1683|dJ1068F16.1 HGNC:16555 20 20p12.2 ribosomal protein L23a pseudogene 6 pseudo RPL23AP6 ribosomal protein L23a pseudogene 6 O - 20121230 -9606 128710 SLX4IP RP5-1099D15.1 C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 HGNC:16225|Ensembl:ENSG00000149346|HPRD:12516|Vega:OTTHUMG00000031873 20 20p12.2 SLX4 interacting protein protein-coding SLX4IP SLX4 interacting protein O UPF0492 protein C20orf94 20121230 -9606 128718 RPS11P1 - RPS11_3_1684|dJ1060K6.1 HGNC:16553 20 20p12.2 ribosomal protein S11 pseudogene 1 pseudo RPS11P1 ribosomal protein S11 pseudogene 1 O - 20121230 -9606 128745 RPLP0P1 - dJ777L9.2 HGNC:16585 20 20p12.1 ribosomal protein, large, P0 pseudogene 1 pseudo RPLP0P1 ribosomal protein, large, P0 pseudogene 1 O - 20121230 -9606 128748 RPL7AP13 - RPL7AL3|dJ348M17.1 HGNC:16565 20 20p12.1 ribosomal protein L7a pseudogene 13 pseudo RPL7AP13 ribosomal protein L7a pseudogene 13 O - 20121230 -9606 128756 RPL15P1 - RPL15_9_1687|dJ726N1.3 HGNC:16583 20 20p11.23 ribosomal protein L15 pseudogene 1 pseudo RPL15P1 ribosomal protein L15 pseudogene 1 O - 20121230 -9606 128760 RPL21P3 - bA189K21.4 HGNC:16533 20 20p11.23 ribosomal protein L21 pseudogene 3 pseudo RPL21P3 ribosomal protein L21 pseudogene 3 O - 20121230 -9606 128770 EIF4E2P1 RP5-1049G11.3 EIF4EL4|dJ1049G11.3 HGNC:16237 20 20p11.23 eukaryotic translation initiation factor 4E family member 2 pseudogene 1 pseudo EIF4E2P1 eukaryotic translation initiation factor 4E family member 2 pseudogene 1 O - 20121230 -9606 128774 MRPS11P1 - dJ746H2.1 HGNC:16584 20 20p11.23 mitochondrial ribosomal protein S11 pseudogene 1 pseudo MRPS11P1 mitochondrial ribosomal protein S11 pseudogene 1 O - 20121230 -9606 128790 SLC25A6P1 - SLC25A5L|dJ1065O2.2 HGNC:16554 20 20p11.22 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6, pseudogene 1 pseudo SLC25A6P1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6, pseudogene 1 O - 20121230 -9606 128817 CSTL1 - CTES1|RCET11|dJ322G13.4 HGNC:15958|Ensembl:ENSG00000125823|HPRD:16770|Vega:OTTHUMG00000032068 20 20p11.21 cystatin-like 1 protein-coding CSTL1 cystatin-like 1 O - 20121230 -9606 128820 CST9LP1 - CTES7C HGNC:39552 20 20p11.21 cystatin 9-like pseudogene 1 pseudo CST9LP1 cystatin 9-like pseudogene 1 O - 20121230 -9606 128821 CST9L UNQ1835/PRO3543 CTES7B|bA218C14.1 HGNC:16233|Ensembl:ENSG00000101435|HPRD:16769|Vega:OTTHUMG00000032073 20 20p11.21 cystatin 9-like protein-coding CST9L cystatin 9-like O cystatin-9-like|testatin 20121230 -9606 128822 CST9 - CLM|CTES7A HGNC:13261|Ensembl:ENSG00000173335|HPRD:16768|Vega:OTTHUMG00000032076 20 20p11.21 cystatin 9 (testatin) protein-coding CST9 cystatin 9 (testatin) O cystatin-9|cystatin-like molecule 20121230 -9606 128826 C20orf166 RP3-353C17.2 dJ353C17.1 HGNC:16159|Ensembl:ENSG00000174407|HPRD:12755|Vega:OTTHUMG00000048000 20 20q13.33 chromosome 20 open reading frame 166 protein-coding C20orf166 chromosome 20 open reading frame 166 O uncharacterized protein C20orf166 20121230 -9606 128848 DKKL1P1 RP5-854E16.1 DKKL2|dJ854E16.1 HGNC:16593 20 20q11.21 dickkopf-like 1 pseudogene 1 pseudo DKKL1P1 dickkopf-like 1 pseudogene 1 O - 20121230 -9606 128853 DUSP15 RP11-243J16.11-006 VHY HGNC:16236|Ensembl:ENSG00000149599|HPRD:13252|Vega:OTTHUMG00000032182 20 20q11.21 dual specificity phosphatase 15 protein-coding DUSP15 dual specificity phosphatase 15 O VH1-related member Y|dual specificity phosphatase-like 15|dual specificity protein phosphatase 15|vaccinia virus VH1-related dual-specific protein phosphatase Y 20121230 -9606 128854 TSPY26P - TSPYL3|bA392M18.1 HGNC:16256|HPRD:18235 20 20q11.21 testis specific protein, Y-linked 26, pseudogene pseudo TSPY26P testis specific protein, Y-linked 26, pseudogene O - 20121230 -9606 128859 BPIFB6 - BPIL3|LPLUNC6 HGNC:16504|MIM:614110|Ensembl:ENSG00000167104|HPRD:16561|Vega:OTTHUMG00000032238 20 20q11.21 BPI fold containing family B, member 6 protein-coding BPIFB6 BPI fold containing family B, member 6 O BPI fold-containing family B member 6|bactericidal/permeability-increasing protein-like 3 20121230 -9606 128861 BPIFA3 RP11-49G10.9 C20orf71|SPLUNC3 HGNC:16204|Ensembl:ENSG00000131059|HPRD:12782|Vega:OTTHUMG00000032245 20 20q11.21 BPI fold containing family A, member 3 protein-coding BPIFA3 BPI fold containing family A, member 3 O BPI fold-containing family A member 3|short long palate, lung and nasal epithelium carcinoma associated 3|short palate, lung and nasal epithelium carcinoma-associated protein 3 20121230 -9606 128862 RPL12P3 - RPL12_17_1694|bA49G10.7 HGNC:16335 20 20q11.21 ribosomal protein L12 pseudogene 3 pseudo RPL12P3 ribosomal protein L12 pseudogene 3 O - 20121230 -9606 128864 C20orf144 - dJ63M2.6 HGNC:16137|Ensembl:ENSG00000149609|HPRD:12749|Vega:OTTHUMG00000032263 20 20q11.22 chromosome 20 open reading frame 144 protein-coding C20orf144 chromosome 20 open reading frame 144 O bcl-2-like protein from testis|bclt|uncharacterized protein C20orf144 20121230 -9606 128866 CHMP4B - C20orf178|CHMP4A|CTPP3|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 HGNC:16171|MIM:610897|Ensembl:ENSG00000101421|HPRD:16642|Vega:OTTHUMG00000032272 20 20q11.22 charged multivesicular body protein 4B protein-coding CHMP4B charged multivesicular body protein 4B O SNF7 homolog associated with Alix 1|Snf7 homologue associated with Alix 1|charged multivesicular body protein 4b|chromatin modifying protein 4B|chromatin-modifying protein 4b|hSnf7-2|hVps32-2|vacuolar protein sorting-associated protein 32-2|vacuolar protein-sorting-associated protein 32-2 20121230 -9606 128869 PIGU RP11-346K17.2 CDC91L1|GAB1 HGNC:15791|MIM:608528|Ensembl:ENSG00000101464|HPRD:12250|Vega:OTTHUMG00000032304 20 20q11.22 phosphatidylinositol glycan anchor biosynthesis, class U protein-coding PIGU phosphatidylinositol glycan anchor biosynthesis, class U O CDC91 (cell division cycle 91, S. cerevisiae, homolog)-like 1|GPI transamidase component PIG-U|GPI transamidase subunit|cell division cycle 91-like 1 protein|cell division cycle protein 91-like 1|phosphatidylinositol glycan anchor biosynthesis class U protein|protein CDC91-like 1 20121230 -9606 128872 HMGB3P1 - HMG4L|HMGB3L1|dJ18C9.3 HGNC:16240 20 20q11.22 high mobility group box 3 pseudogene 1 pseudo HMGB3P1 high mobility group box 3 pseudogene 1 O - 20121230 -9606 128876 FAM83C - C20orf128|dJ614O4.7 HGNC:16121|Ensembl:ENSG00000125998|HPRD:12743|Vega:OTTHUMG00000032332 20 20q11.22 family with sequence similarity 83, member C protein-coding FAM83C family with sequence similarity 83, member C O protein FAM83C 20121230 -9606 128879 HMGB3P2 - HMG4L2|HMGB3L2|dJ550H1.1 HGNC:16574 20 20q11.23 high mobility group box 3 pseudogene 2 pseudo HMGB3P2 high mobility group box 3 pseudogene 2 O - 20121230 -9606 128954 GAB4 - - HGNC:18325 22 22q11.1 GRB2-associated binding protein family, member 4 protein-coding GAB4 GRB2-associated binding protein family, member 4 O GRB2-associated binder 2-like protein|GRB2-associated binder 4|GRB2-associated-binding protein 4|growth factor receptor bound protein 2-associated protein 4 20121230 -9606 128977 C22orf39 - - HGNC:27012|Ensembl:ENSG00000242259|HPRD:14041|Vega:OTTHUMG00000150137 22 22q11.21 chromosome 22 open reading frame 39 protein-coding C22orf39 chromosome 22 open reading frame 39 O UPF0545 protein C22orf39 20121230 -9606 128989 TANGO2 - C22orf25 HGNC:25439|Ensembl:ENSG00000183597|HPRD:13229|Vega:OTTHUMG00000150510 22 22q11.21 transport and golgi organization 2 homolog (Drosophila) protein-coding TANGO2 transport and golgi organization 2 homolog (Drosophila) O uncharacterized protein C22orf25 20121230 -9606 128997 SLC9A3P2 - - HGNC:19325 22 22q11.21 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 2 pseudo SLC9A3P2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 2 O - 20121230 -9606 129025 ZNF280A - 3'OY11.1|SUHW1|ZNF280|ZNF636 HGNC:18597|Ensembl:ENSG00000169548|HPRD:18129|Vega:OTTHUMG00000030545 22 22q11.22 zinc finger protein 280A protein-coding ZNF280A zinc finger protein 280A O suppressor of hairy wing homolog 1|zinc finger protein 280|zinc finger protein 636 20121230 -9606 129026 LOC129026 - - - 22 22q11.22 gamma-glutamyltransferase-like activity 1 pseudogene pseudo - - - - 20121230 -9606 129049 SGSM1 RP5-930L11.1 RUTBC2 HGNC:29410|MIM:611417|Ensembl:ENSG00000167037|Vega:OTTHUMG00000150837 22 22q11.23 small G protein signaling modulator 1 protein-coding SGSM1 small G protein signaling modulator 1 O RUN and TBC1 domain containing 2|RUN and TBC1 domain-containing protein 2|small G protein signaling modulator 1 protein 20121230 -9606 129080 EMID1 CTA-984G1.2 EMI5|EMU1 HGNC:18036|MIM:608926|Ensembl:ENSG00000186998|HPRD:09936|Vega:OTTHUMG00000151013 22 22q12.2 EMI domain containing 1 protein-coding EMID1 EMI domain containing 1 O EMI domain-containing protein 1|emilin and multimerin domain-containing protein 1 20121230 -9606 129099 CPSF1P1 - dJ90G24.5 HGNC:19251 22 22q12.3 cleavage and polyadenylation specific factor 1, 160kDa pseudogene 1 pseudo CPSF1P1 cleavage and polyadenylation specific factor 1, 160kDa pseudogene 1 O - 20121230 -9606 129138 ANKRD54 - LIAR HGNC:25185|MIM:613383|Ensembl:ENSG00000100124|HPRD:14042|Vega:OTTHUMG00000150663 22 22q13.1 ankyrin repeat domain 54 protein-coding ANKRD54 ankyrin repeat domain 54 O ankyrin repeat domain-containing protein 54|lyn-interacting ankyrin repeat protein 20121230 -9606 129285 PPP1R21 - CCDC128|KLRAQ1 HGNC:30595|Ensembl:ENSG00000162869|HPRD:17294|Vega:OTTHUMG00000129167 2 2p16.3 protein phosphatase 1, regulatory subunit 21 protein-coding PPP1R21 protein phosphatase 1, regulatory subunit 21 O KLRAQ motif containing 1|KLRAQ motif-containing protein 1|coiled-coil domain containing 128|coiled-coil domain-containing protein 128|protein phosphatase 1 regulatory subunit 21 20121230 -9606 129293 TRABD2A - C2orf89|TIKI1 HGNC:27013|MIM:614912|Ensembl:ENSG00000186854|Vega:OTTHUMG00000152922 2 2p11.2 TraB domain containing 2A protein-coding TRABD2A TraB domain containing 2A O TRAB domain-containing protein 2A|UPF0632 protein C2orf89|metalloprotease TIKI1 20121230 -9606 129303 TMEM150A - TM6P1|TMEM150 HGNC:24677|Ensembl:ENSG00000168890|HPRD:17006|Vega:OTTHUMG00000130168 2 2p11.2 transmembrane protein 150A protein-coding TMEM150A transmembrane protein 150A O fasting-inducible integral membrane protein TM6P1|transmembrane protein 150 20121230 -9606 129401 NUP35 - MP44|NP44|NUP53 HGNC:29797|MIM:608140|Ensembl:ENSG00000163002|HPRD:10486|Vega:OTTHUMG00000132621 2 2q32.1 nucleoporin 35kDa protein-coding NUP35 nucleoporin 35kDa O 35 kDa nucleoporin|MP-44|mitotic phosphoprotein 44|nuclear pore complex protein Nup53|nucleoporin NUP53|nucleoporin Nup35 20121230 -9606 129402 LIN28AP1 - - HGNC:38055 2 2q32.1 lin-28 homolog A (C. elegans) pseudogene 1 pseudo LIN28AP1 lin-28 homolog A (C. elegans) pseudogene 1 O - 20121230 -9606 129446 XIRP2 - CMYA3 HGNC:14303|MIM:609778|Ensembl:ENSG00000163092|HPRD:10267|Vega:OTTHUMG00000154027 2 2q24.3 xin actin-binding repeat containing 2 protein-coding XIRP2 xin actin-binding repeat containing 2 O beta-xin|cardiomyopathy associated 3|cardiomyopathy-associated protein 3|myomaxin|xeplin|xin actin-binding repeat-containing protein 2|xin repeat protein 2 20121230 -9606 129450 TYW5 - C2orf60|hTYW5 HGNC:26754|Ensembl:ENSG00000162971|HPRD:08232|Vega:OTTHUMG00000132770 2 2q33.1 tRNA-yW synthesizing protein 5 protein-coding TYW5 tRNA-yW synthesizing protein 5 O jmjC domain-containing protein C2orf60|tRNA wybutosine-synthesizing protein 5|tRNA yW-synthesizing enzyme 5 20121230 -9606 129521 NMS - - HGNC:32203|Ensembl:ENSG00000204640|HPRD:17638|Vega:OTTHUMG00000153142 2 2q11.2 neuromedin S protein-coding NMS neuromedin S O neuromedin-S 20121230 -9606 129522 LOC129522 - - - 2 2q11.2 ralA binding protein 1 pseudogene pseudo - - - - 20121230 -9606 129530 LYG1 UNQ1939/PRO4422 SALW1939 HGNC:27014|Ensembl:ENSG00000144214|HPRD:14043|Vega:OTTHUMG00000130639 2 2q11.2 lysozyme G-like 1 protein-coding LYG1 lysozyme G-like 1 O lysozyme g-like protein 1 20121230 -9606 129531 MITD1 - - HGNC:25207|Ensembl:ENSG00000158411|HPRD:14044|Vega:OTTHUMG00000130638 2 2q11.2 MIT, microtubule interacting and transport, domain containing 1 protein-coding MITD1 MIT, microtubule interacting and transport, domain containing 1 O MIT domain-containing protein 1 20121230 -9606 129560 LOC129560 - - - 2 2q22.1 adenosylhomocysteinase pseudogene pseudo - - - - 20121230 -9606 129563 DIS3L2 - FAM6A|PRLMNS HGNC:28648|MIM:614184|Ensembl:ENSG00000144535|HPRD:14619|Vega:OTTHUMG00000153385 2 2q37.1 DIS3 mitotic control homolog (S. cerevisiae)-like 2 protein-coding DIS3L2 DIS3 mitotic control homolog (S. cerevisiae)-like 2 O DIS3-like exonuclease 2|family with sequence similarity 6, member A 20121230 -9606 129607 CMPK2 - TMPK2|TYKi|UMP-CMPK2 HGNC:27015|MIM:611787|Ensembl:ENSG00000134326|HPRD:11233|Vega:OTTHUMG00000151629 2 2p25.2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial protein-coding CMPK2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial O UMP-CMP kinase 2, mitochondrial|cytidylate kinase 2|mitochondrial UMP-CMP kinase|thymidine monophosphate kinase 2|thymidylate kinase family LPS-inducible member 20121230 -9606 129642 MBOAT2 - LPCAT4|OACT2 HGNC:25193|MIM:611949|Ensembl:ENSG00000143797|HPRD:11410|Vega:OTTHUMG00000090363 2 2p25.1 membrane bound O-acyltransferase domain containing 2 protein-coding MBOAT2 membrane bound O-acyltransferase domain containing 2 O 1-acylglycerophosphate O-acyltransferase|1-acylglycerophosphoethanolamine O-acyltransferase|LPAAT|LPEAT|LPLAT 2|O-acyltransferase (membrane bound) domain containing 2|O-acyltransferase domain-containing protein 2|lyso-PA acyltransferase|lyso-PE acyltransferase|lysophosphatidic acid acyltransferase|lysophosphatidylethanolamine acyltransferase|lysophospholipid acyltransferase 2|membrane-bound O-acyltransferase domain-containing protein 2 20121230 -9606 129656 LOC129656 - - - 2 2p16.3 CREB regulated transcription coactivator 1 pseudogene pseudo - - - - 20121230 -9606 129684 CNTNAP5 - caspr5 HGNC:18748|MIM:610519|Ensembl:ENSG00000155052|HPRD:16732|Vega:OTTHUMG00000153356 2 2q14.3 contactin associated protein-like 5 protein-coding CNTNAP5 contactin associated protein-like 5 O cell recognition molecule Caspr5|contactin-associated protein-like 5 20121230 -9606 129685 TAF8 - 43|II|TAF|TAFII-43|TAFII43|TBN HGNC:17300|MIM:609514|Ensembl:ENSG00000137413|HPRD:18167|Vega:OTTHUMG00000014692 6 6p21.1 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa protein-coding TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa O TAF(II)43|TATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 45/50kDa|TBP-associated factor 43 kDa|TBP-associated factor 8|TBP-associated factor TAFII43|TBP-associated factor, RNA polymerase II, 43 kD|hTAFII43|protein taube nuss|taube nuss homolog|transcription initiation factor TFIID 43 kDa subunit|transcription initiation factor TFIID subunit 8 20121230 -9606 129787 TMEM18 - - HGNC:25257|MIM:613220|Ensembl:ENSG00000151353|HPRD:15529|Vega:OTTHUMG00000151381 2 2p25.3 transmembrane protein 18 protein-coding TMEM18 transmembrane protein 18 O - 20121230 -9606 129790 C7orf13 tcag7.556 MY040 HGNC:17126|MIM:610242|HPRD:12908 7 7q36.3 chromosome 7 open reading frame 13 miscRNA C7orf13 chromosome 7 open reading frame 13 O - 20121230 -9606 129804 FBLN7 - TM14 HGNC:26740|MIM:611551|Ensembl:ENSG00000144152|HPRD:08783|Vega:OTTHUMG00000153267 2 2q13 fibulin 7 protein-coding FBLN7 fibulin 7 O FIBL-7|fibulin-7 20121230 -9606 129807 NEU4 LP5125 - HGNC:21328|MIM:608527|Ensembl:ENSG00000204099|HPRD:12249|Vega:OTTHUMG00000133412 2 2q37.3 sialidase 4 protein-coding NEU4 sialidase 4 O N-acetyl-alpha-neuraminidase 4|neuraminidase 4|sialidase-4 20121230 -9606 129831 RBM45 - DRB1 HGNC:24468|MIM:608888|Ensembl:ENSG00000155636|HPRD:09927|Vega:OTTHUMG00000154202 2 2q31.2 RNA binding motif protein 45 protein-coding RBM45 RNA binding motif protein 45 O RB-1|RNA-binding motif protein 45|RNA-binding protein 45|developmentally regulated RNA-binding protein 1|developmentally-regulated RNA-binding protein 1|putative RNA binding protein RB-1 20121230 -9606 129841 RPSAP25 - RPSA_7_299 HGNC:36405 2 2q31.1 ribosomal protein SA pseudogene 25 pseudo RPSAP25 ribosomal protein SA pseudogene 25 O - 20121230 -9606 129852 C2orf73 - - HGNC:26861|Ensembl:ENSG00000177994|HPRD:13446|Vega:OTTHUMG00000151826 2 2p16.2 chromosome 2 open reading frame 73 protein-coding C2orf73 chromosome 2 open reading frame 73 O uncharacterized protein C2orf73 20121230 -9606 129868 TRIM43 - TRIM43A HGNC:19015|Ensembl:ENSG00000144015|HPRD:15560|Vega:OTTHUMG00000130401 2 2q11.1 tripartite motif containing 43 protein-coding TRIM43 tripartite motif containing 43 O tripartite motif-containing 43|tripartite motif-containing protein 43 20121230 -9606 129870 UBTFL3 - UBTFL5 HGNC:35402 2 2q11.1 upstream binding transcription factor, RNA polymerase I-like 3 (pseudogene) pseudo UBTFL3 upstream binding transcription factor, RNA polymerase I-like 3 (pseudogene) O - 20121209 -9606 129880 BBS5 - - HGNC:970|MIM:603650|Ensembl:ENSG00000163093|Ensembl:ENSG00000251569|HPRD:10353|Vega:OTTHUMG00000132207|Vega:OTTHUMG00000162280 2 2q31.1 Bardet-Biedl syndrome 5 protein-coding BBS5 Bardet-Biedl syndrome 5 O Bardet-Biedl syndrome 5 protein 20121230 -9606 129881 CCDC173 - C2orf77 HGNC:25064|Ensembl:ENSG00000154479|Vega:OTTHUMG00000154116 2 2q31.1 coiled-coil domain containing 173 protein-coding CCDC173 coiled-coil domain containing 173 O coiled-coil domain-containing protein 173 20121230 -9606 130013 ACMSD - - HGNC:19288|MIM:608889|Ensembl:ENSG00000153086|HPRD:12326|Vega:OTTHUMG00000131711 2 2q21.3 aminocarboxymuconate semialdehyde decarboxylase protein-coding ACMSD aminocarboxymuconate semialdehyde decarboxylase O 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase|picolinate carboxylase 20121230 -9606 130026 ICA1L - ALS2CR14|ALS2CR15 HGNC:14442|Ensembl:ENSG00000163596|HPRD:12446|HPRD:12447|Vega:OTTHUMG00000132856 2 2q33.2 islet cell autoantigen 1,69kDa-like protein-coding ICA1L islet cell autoantigen 1,69kDa-like O Ica69-related protein|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 14|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 15|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 14 protein|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 15 protein|islet cell autoantigen 1-like protein 20121230 -9606 130074 FAM168B - MANI HGNC:27016|Ensembl:ENSG00000152102|HPRD:17295|Vega:OTTHUMG00000153473 2 2q21.1 family with sequence similarity 168, member B protein-coding FAM168B family with sequence similarity 168, member B O myelin-associated neurite-outgrowth inhibitor|p20|protein FAM168B 20121230 -9606 130075 OR9A4 - - HGNC:15095|Ensembl:ENSG00000258083|HPRD:17797|Vega:OTTHUMG00000158370 7 7q34 olfactory receptor, family 9, subfamily A, member 4 protein-coding OR9A4 olfactory receptor, family 9, subfamily A, member 4 O olfactory receptor 9A4|olfactory receptor OR7-1 20121230 -9606 130106 CIB4 - KIP4 HGNC:33703|MIM:610646|Ensembl:ENSG00000157884|HPRD:18726|Vega:OTTHUMG00000151993 2 2p23.3 calcium and integrin binding family member 4 protein-coding CIB4 calcium and integrin binding family member 4 O calcium and integrin-binding family member 4 20121230 -9606 130120 REG3G UNQ429/PRO162 LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG-III|UNQ429 HGNC:29595|MIM:609933|Ensembl:ENSG00000143954|HPRD:10137|Vega:OTTHUMG00000130018 2 2p12 regenerating islet-derived 3 gamma protein-coding REG3G regenerating islet-derived 3 gamma O REG-3-gamma|pancreatitis-associated protein 1B|pancreatitis-associated protein IB|reg III-gamma|regenerating gene III|regenerating islet-derived protein 3-gamma|regenerating islet-derived protein III-gamma 20121230 -9606 130132 RFTN2 - C2orf11|Raftlin-2 HGNC:26402|Ensembl:ENSG00000162944|HPRD:12805|Vega:OTTHUMG00000132746 2 2q33.1 raftlin family member 2 protein-coding RFTN2 raftlin family member 2 O raft-linking protein 2|raftlin-2 20121230 -9606 130162 CLHC1 - C2orf63 HGNC:26453|Ensembl:ENSG00000162994|HPRD:08100|Vega:OTTHUMG00000151918 2 2p16.1 clathrin heavy chain linker domain containing 1 protein-coding CLHC1 clathrin heavy chain linker domain containing 1 O clathrin heavy chain linker domain-containing protein 1 20121230 -9606 130195 HSPA8P6 - - HGNC:44921 2 2q34 heat shock 70kDa protein 8 pseudogene 6 pseudo HSPA8P6 heat shock 70kDa protein 8 pseudogene 6 O - 20121230 -9606 130271 PLEKHH2 - PLEKHH1L HGNC:30506|MIM:612723|Ensembl:ENSG00000152527|HPRD:15149|Vega:OTTHUMG00000128657 2 2p21 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 protein-coding PLEKHH2 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 O pleckstrin homology domain-containing family H member 2 20121230 -9606 130340 AP1S3 - - HGNC:18971|Ensembl:ENSG00000152056|HPRD:16495|Vega:OTTHUMG00000133165 2 2q36.1 adaptor-related protein complex 1, sigma 3 subunit protein-coding AP1S3 adaptor-related protein complex 1, sigma 3 subunit O AP-1 complex subunit sigma-3|adapter-related protein complex 1 sigma-1C subunit|adaptor protein complex AP-1 sigma-1C subunit|clathrin assembly protein complex 1 sigma-1C small chain|golgi adaptor HA1/AP1 adaptin sigma-1C subunit|sigma 1C adaptin|sigma 1C subunit of AP-1 clathrin|sigma-adaptin 1C|sigma1C-adaptin 20121230 -9606 130355 C2orf76 - AIM29 HGNC:27017|Ensembl:ENSG00000186132|HPRD:18547|Vega:OTTHUMG00000153298 2 2q14.2 chromosome 2 open reading frame 76 protein-coding C2orf76 chromosome 2 open reading frame 76 O UPF0538 protein C2orf76 20121230 -9606 130367 SGPP2 - SPP2 HGNC:19953|MIM:612827|Ensembl:ENSG00000163082|HPRD:18048|Vega:OTTHUMG00000133156 2 2q36.1 sphingosine-1-phosphate phosphatase 2 protein-coding SGPP2 sphingosine-1-phosphate phosphatase 2 O SPPase2|hSPP2|sphingosine 1-phosphate phosphohydrolase 2|sphingosine-1-phosphatase 2|sphingosine-1-phosphate phosphotase 2 20121230 -9606 130399 ACVR1C - ACVRLK7|ALK7 HGNC:18123|MIM:608981|Ensembl:ENSG00000123612|HPRD:10608|Vega:OTTHUMG00000131964 2 2q24.1 activin A receptor, type IC protein-coding ACVR1C activin A receptor, type IC O ACTR-IC|ALK-7|activin receptor type IC|activin receptor type-1C|activin receptor-like kinase 7 20121230 -9606 130429 RPSAP27 - RPSA_8_320 HGNC:36650 2 2q34 ribosomal protein SA pseudogene 27 pseudo RPSAP27 ribosomal protein SA pseudogene 27 O - 20121230 -9606 130497 OSR1 - ODD HGNC:8111|MIM:608891|Ensembl:ENSG00000143867|HPRD:16401|Vega:OTTHUMG00000088793 2 2p24.1 odd-skipped related 1 (Drosophila) protein-coding OSR1 odd-skipped related 1 (Drosophila) O odd-skipped homolog|protein odd-skipped-related 1 20121230 -9606 130500 CISD1P1 - CISD1B|ZCD1B HGNC:29611 2 2p24.1 CDGSH iron sulfur domain 1 pseudogene 1 pseudo CISD1P1 CDGSH iron sulfur domain 1 pseudogene 1 O - 20121230 -9606 130502 TTC32 - - HGNC:32954|Ensembl:ENSG00000183891|HPRD:17296|Vega:OTTHUMG00000151776 2 2p24.1 tetratricopeptide repeat domain 32 protein-coding TTC32 tetratricopeptide repeat domain 32 O TPR repeat protein 32|tetratricopeptide repeat protein 32 20121230 -9606 130507 UBR3 - ZNF650 HGNC:30467|MIM:613831|Ensembl:ENSG00000144357|HPRD:15887|Vega:OTTHUMG00000132229 2 2q31.1 ubiquitin protein ligase E3 component n-recognin 3 (putative) protein-coding UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) O E3 ubiquitin-protein ligase UBR3|N-recognin-3|ubiquitin-protein ligase E3-alpha-3|ubiquitin-protein ligase E3-alpha-III|zinc finger protein 650 20121230 -9606 130535 KCTD18 - 6530404F10Rik HGNC:26446|Ensembl:ENSG00000155729|HPRD:08098|Vega:OTTHUMG00000132781 2 2q33.1 potassium channel tetramerisation domain containing 18 protein-coding KCTD18 potassium channel tetramerisation domain containing 18 O BTB/POZ domain-containing protein KCTD18 20121230 -9606 130540 ALS2CR12 - - HGNC:14439|Ensembl:ENSG00000155749|HPRD:12444|Vega:OTTHUMG00000132824 2 2q33.1 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 protein-coding ALS2CR12 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 O amyotrophic lateral sclerosis 2 chromosomal region candidate gene 12 protein 20121230 -9606 130557 ZNF513 - HMFT0656|RP58 HGNC:26498|MIM:613598|Ensembl:ENSG00000163795|HPRD:15813|Vega:OTTHUMG00000097783 2 2p23.3 zinc finger protein 513 protein-coding ZNF513 zinc finger protein 513 O - 20121230 -9606 130560 SPATA3 - TSARG1 HGNC:17884|Ensembl:ENSG00000173699|HPRD:15428|Vega:OTTHUMG00000133221 2 2q37.1 spermatogenesis associated 3 protein-coding SPATA3 spermatogenesis associated 3 O spermatogenesis-associated protein 3|testis and spermatogenesis cell apoptosis related gene 1|testis and spermatogenesis cell-related protein 1|testis spermatocyte apoptosis-related protein 1 20121230 -9606 130574 LYPD6 UNQ3023/PRO9821 - HGNC:28751|MIM:613359|Ensembl:ENSG00000187123|HPRD:14676|Vega:OTTHUMG00000131852 2 2q23.2 LY6/PLAUR domain containing 6 protein-coding LYPD6 LY6/PLAUR domain containing 6 O ly6/PLAUR domain-containing protein 6 20121230 -9606 130576 LYPD6B - CT116|LYPD7 HGNC:27018|Ensembl:ENSG00000150556|HPRD:14045|Vega:OTTHUMG00000153743 2 2q23.2 LY6/PLAUR domain containing 6B protein-coding LYPD6B LY6/PLAUR domain containing 6B O cancer/testis antigen 116|ly6/PLAUR domain-containing protein 6B 20121230 -9606 130589 GALM BLOCK25 IBD1 HGNC:24063|MIM:608883|Ensembl:ENSG00000143891|HPRD:13559|Vega:OTTHUMG00000102077 2 2p22.1 galactose mutarotase (aldose 1-epimerase) protein-coding GALM galactose mutarotase (aldose 1-epimerase) O aldose 1-epimerase|galactomutarotase 20121230 -9606 130612 TMEM198 - TMEM198A HGNC:33704|Ensembl:ENSG00000188760|HPRD:14718|Vega:OTTHUMG00000059156 2 2q35 transmembrane protein 198 protein-coding TMEM198 transmembrane protein 198 O - 20121230 -9606 130617 ZFAND2B - AIRAPL HGNC:25206|MIM:613474|Ensembl:ENSG00000158552|HPRD:11234|Vega:OTTHUMG00000133135 2 2q35 zinc finger, AN1-type domain 2B protein-coding ZFAND2B zinc finger, AN1-type domain 2B O AIRAP-like protein|AN1-type zinc finger protein 2B|arsenite-inducible RNA-associated protein-like protein 20121230 -9606 130678 RPLP1P5 - RPLP1_1_196 HGNC:35842 2 2p24.3 ribosomal protein, large, P1 pseudogene 5 pseudo RPLP1P5 ribosomal protein, large, P1 pseudogene 5 O - 20121230 -9606 130700 PSMB3P2 - - HGNC:30150 2 2q35 proteasome (prosome, macropain) subunit, beta type, 3 pseudogene 2 pseudo PSMB3P2 proteasome (prosome, macropain) subunit, beta type, 3 pseudogene 2 O - 20121230 -9606 130728 RPL7P13 - RPL7_4_218 HGNC:36861 2 2p16.3 ribosomal protein L7 pseudogene 13 pseudo RPL7P13 ribosomal protein L7 pseudogene 13 O - 20121230 -9606 130733 TMEM178A PSEC0131 TMEM178 HGNC:28517|Ensembl:ENSG00000152154|HPRD:14577|Vega:OTTHUMG00000128591 2 2p22.1 transmembrane protein 178A protein-coding TMEM178A transmembrane protein 178A O transmembrane protein 178 20121230 -9606 130749 CPO - - HGNC:21011|MIM:609563|Ensembl:ENSG00000144410|HPRD:07098|Vega:OTTHUMG00000088987 2 2q33.3 carboxypeptidase O protein-coding CPO carboxypeptidase O O metallocarboxypeptidase C|metallocarboxypeptidase O 20121230 -9606 130752 MDH1B - RP11-95H11 HGNC:17836|Ensembl:ENSG00000138400|HPRD:14375|Vega:OTTHUMG00000132918 2 2q33.3 malate dehydrogenase 1B, NAD (soluble) protein-coding MDH1B malate dehydrogenase 1B, NAD (soluble) O putative malate dehydrogenase 1B 20121230 -9606 130773 RPL23AP37 - RPL23A_5_234 HGNC:35664 2 2p14 ribosomal protein L23a pseudogene 37 pseudo RPL23AP37 ribosomal protein L23a pseudogene 37 O - 20121230 -9606 130802 DNMT3AP1 - - HGNC:23164 2 2p14 DNA methyltransferase 3A pseudogene 1 pseudo DNMT3AP1 DNA methyltransferase 3A pseudogene 1 O - 20121230 -9606 130813 C2orf50 - - HGNC:26324|Ensembl:ENSG00000150873|HPRD:08051|Vega:OTTHUMG00000119057 2 2p25.1 chromosome 2 open reading frame 50 protein-coding C2orf50 chromosome 2 open reading frame 50 O uncharacterized protein C2orf50 20121230 -9606 130814 PQLC3 - C2orf22 HGNC:28503|Ensembl:ENSG00000162976|HPRD:12810|Vega:OTTHUMG00000119055 2 2p25.1 PQ loop repeat containing 3 protein-coding PQLC3 PQ loop repeat containing 3 O PQ-loop repeat-containing protein 3 20121230 -9606 130827 TMEM182 UNQ6974/PRO21957 - HGNC:26391|Ensembl:ENSG00000170417|HPRD:08698|Vega:OTTHUMG00000130779 2 2q12.1 transmembrane protein 182 protein-coding TMEM182 transmembrane protein 182 O - 20121230 -9606 130865 RPL26P13 - RPL26_6_221 HGNC:36639 2 2p16.1 ribosomal protein L26 pseudogene 13 pseudo RPL26P13 ribosomal protein L26 pseudogene 13 O - 20121230 -9606 130872 AHSA2 - Hch1 HGNC:20437|Ensembl:ENSG00000173209|HPRD:16479|Vega:OTTHUMG00000129437 2 2p15 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) protein-coding AHSA2 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) O activator of 90 kDa heat shock protein ATPase homolog 2 20121230 -9606 130888 FBXO36 - Fbx36 HGNC:27020|MIM:609105|Ensembl:ENSG00000153832|HPRD:16443|Vega:OTTHUMG00000133206 2 2q36.3 F-box protein 36 protein-coding FBXO36 F-box protein 36 O F-box only protein 36 20121230 -9606 130916 MTERFD2 HSPC096 - HGNC:28785|Ensembl:ENSG00000122085|HPRD:14699|Vega:OTTHUMG00000133393 2 2q37.3 MTERF domain containing 2 protein-coding MTERFD2 MTERF domain containing 2 O mTERF domain-containing protein 2 20121230 -9606 130940 CCDC148 - - HGNC:25191|Ensembl:ENSG00000153237|HPRD:14046|Vega:OTTHUMG00000153973 2 2q24.1 coiled-coil domain containing 148 protein-coding CCDC148 coiled-coil domain containing 148 O coiled-coil domain-containing protein 148 20121230 -9606 130951 C2orf65 - D6Mm5e HGNC:25183|Ensembl:ENSG00000159374|HPRD:14047|Vega:OTTHUMG00000152918 2 2p13.1 chromosome 2 open reading frame 65 protein-coding C2orf65 chromosome 2 open reading frame 65 O uncharacterized protein C2orf65 20121230 -9606 131034 CPNE4 - COPN4|CPN4 HGNC:2317|MIM:604208|Ensembl:ENSG00000196353|HPRD:05017|Vega:OTTHUMG00000159631 3 3q22.1 copine IV protein-coding CPNE4 copine IV O copine 8|copine-4|copine-8 20121230 -9606 131054 LOC131054 - - - 3 3q26.33 ralA binding protein 1 pseudogene pseudo - - - - 20121230 -9606 131055 LOC131055 - - - 3 3q26.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 131076 CCDC58 - - HGNC:31136|Ensembl:ENSG00000160124|HPRD:18548|Vega:OTTHUMG00000159490 3 3q21.1 coiled-coil domain containing 58 protein-coding CCDC58 coiled-coil domain containing 58 O coiled-coil domain-containing protein 58 20121230 -9606 131096 KCNH8 - ELK|ELK1|Kv12.1|elk3 HGNC:18864|MIM:608260|Ensembl:ENSG00000183960|HPRD:10006|Vega:OTTHUMG00000129891 3 3p24.3 potassium voltage-gated channel, subfamily H (eag-related), member 8 protein-coding KCNH8 potassium voltage-gated channel, subfamily H (eag-related), member 8 O ELK channel 3|ether-a-go-go-like potassium channel 1|ether-a-go-go-like potassium channel 3|hElk1|potassium voltage-gated channel subfamily H member 8|voltage-gated potassium channel subunit Kv12.1 20121230 -9606 131118 DNAJC19 - PAM18|TIM14|TIMM14 HGNC:30528|MIM:608977|Ensembl:ENSG00000205981|HPRD:12349|Vega:OTTHUMG00000158180 3 3q26.33 DnaJ (Hsp40) homolog, subfamily C, member 19 protein-coding DNAJC19 DnaJ (Hsp40) homolog, subfamily C, member 19 O homolog of yeast TIM14|mitochondrial import inner membrane translocase subunit TIM14 20121230 -9606 131149 OTOL1 - C1QTNF15 HGNC:34071|Ensembl:ENSG00000182447|Vega:OTTHUMG00000159074 3 3q26.1 otolin 1 protein-coding OTOL1 otolin 1 O C1q and tumor necrosis factor related protein 15|otolin 1 homolog|otolin-1 20121230 -9606 131177 FAM3D UNQ567/PRO1130 EF7|OIT1 HGNC:18665|MIM:608619|Ensembl:ENSG00000198643|HPRD:12271|Vega:OTTHUMG00000159148 3 3p14.2 family with sequence similarity 3, member D protein-coding FAM3D family with sequence similarity 3, member D O cytokine-like protein EF-7|protein FAM3D 20121230 -9606 131185 RAD23BP1 - - HGNC:44509 3 3p24.3 RAD23 homolog B (S. cerevisiae) pseudogene 1 pseudo RAD23BP1 RAD23 homolog B (S. cerevisiae) pseudogene 1 O - 20121230 -9606 131368 ZPLD1 - - HGNC:27022|Ensembl:ENSG00000170044|HPRD:14048|Vega:OTTHUMG00000159229 3 3q12.3 zona pellucida-like domain containing 1 protein-coding ZPLD1 zona pellucida-like domain containing 1 O ZP domain-containing protein 1|zona pellucida-like domain-containing protein 1 20121230 -9606 131375 LYZL4 - 1810009N24Rik|LYC4 HGNC:28387|MIM:612750|Ensembl:ENSG00000157093|HPRD:14338|Vega:OTTHUMG00000131793 3 3p22.1 lysozyme-like 4 protein-coding LYZL4 lysozyme-like 4 O lysozyme-4|lysozyme-like protein 4 20121230 -9606 131377 KBTBD5 - SRYP HGNC:30372|Ensembl:ENSG00000157119|HPRD:11058|Vega:OTTHUMG00000133045 3 3p22.1 kelch repeat and BTB (POZ) domain containing 5 protein-coding KBTBD5 kelch repeat and BTB (POZ) domain containing 5 O kelch repeat and BTB domain-containing protein 5|sarcosynapsin 20121230 -9606 131405 TRIM71 - LIN-41|LIN41 HGNC:32669|Ensembl:ENSG00000206557|Vega:OTTHUMG00000155778 3 3p22.3 tripartite motif containing 71, E3 ubiquitin protein ligase protein-coding TRIM71 tripartite motif containing 71, E3 ubiquitin protein ligase O abnormal cell LINeage LIN-41|homolog of C. elegans Lin-41|protein lin-41 homolog|tripartite motif-containing 71|tripartite motif-containing protein 71 20121230 -9606 131408 FAM131A UNQ715 C3orf40|FLAT715|PRO1378 HGNC:28308|Ensembl:ENSG00000175182|HPRD:14481|Vega:OTTHUMG00000156206 3 3q27.1 family with sequence similarity 131, member A protein-coding FAM131A family with sequence similarity 131, member A O protein FAM131A 20121230 -9606 131450 CD200R1 UNQ2522/PRO6015 CD200R|HCRTR2|MOX2R|OX2R HGNC:24235|MIM:607546|Ensembl:ENSG00000163606|HPRD:09609|Vega:OTTHUMG00000159298 3 3q13.2 CD200 receptor 1 protein-coding CD200R1 CD200 receptor 1 O CD200 cell surface glycoprotein receptor|MOX2 receptor|cell surface glycoprotein CD200 receptor 1|cell surface glycoprotein OX2 receptor 1|cell surface glycoprotein receptor CD200 20121230 -9606 131474 CHCHD4 - MIA40|TIMM40 HGNC:26467|MIM:611077|Ensembl:ENSG00000163528|HPRD:13045|Vega:OTTHUMG00000129805 3 3p25.1 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 O coiled-coil-helix-coiled-coil-helix domain-containing protein 4|mitochondrial intermembrane space import and assembly 40 homolog|mitochondrial intermembrane space import and assembly protein 40|translocase of inner mitochondrial membrane 40 homolog 20121230 -9606 131540 ZDHHC19 - DHHC19 HGNC:20713|Ensembl:ENSG00000163958|HPRD:15714|Vega:OTTHUMG00000133642 3 3q29 zinc finger, DHHC-type containing 19 protein-coding ZDHHC19 zinc finger, DHHC-type containing 19 O DHHC-19|probable palmitoyltransferase ZDHHC19|zinc finger DHHC domain-containing protein 19|zinc finger, DHHC domain containing 19 20121230 -9606 131544 CRYBG3 - DKFZp667G2110 HGNC:34427|Ensembl:ENSG00000080200|Vega:OTTHUMG00000159187 3 3q11.2 beta-gamma crystallin domain containing 3 protein-coding CRYBG3 beta-gamma crystallin domain containing 3 O beta/gamma crystallin domain-containing protein 3 20121230 -9606 131566 DCBLD2 - CLCP1|ESDN HGNC:24627|MIM:608698|Ensembl:ENSG00000057019|HPRD:10567|Vega:OTTHUMG00000151985 3 3q12.1|3 discoidin, CUB and LCCL domain containing 2 protein-coding DCBLD2 discoidin, CUB and LCCL domain containing 2 O 1700055P21Rik|CUB, LCCL and coagulation factor V/VIII-homology domains protein 1|coagulation factor V/VIII-homology domains protein 1|discoidin, CUB and LCCL domain-containing protein 2|endothelial and smooth muscle cell-derived neuropilin-like protein 20121230 -9606 131572 MESTP4 - - HGNC:38554 3 3p24.1 mesoderm specific transcript pseudogene 4 pseudo MESTP4 mesoderm specific transcript pseudogene 4 O - 20121230 -9606 131578 LRRC15 - LIB HGNC:20818|Ensembl:ENSG00000172061|HPRD:10058|Vega:OTTHUMG00000156048 3 3q29 leucine rich repeat containing 15 protein-coding LRRC15 leucine rich repeat containing 15 O hLib|leucine-rich repeat protein induced by beta amyloid|leucine-rich repeat protein induced by beta-amyloid homolog|leucine-rich repeat-containing protein 15 20121230 -9606 131583 FAM43A PP7298 - HGNC:26888|Ensembl:ENSG00000185112|HPRD:13308|Vega:OTTHUMG00000156016 3 3q29 family with sequence similarity 43, member A protein-coding FAM43A family with sequence similarity 43, member A O protein FAM43A 20121230 -9606 131601 TPRA1 PP6566 GPR175|TMEM227|TPRA40 HGNC:30413|MIM:608336|Ensembl:ENSG00000163870|HPRD:16318|Vega:OTTHUMG00000159639 3 3q21.2 transmembrane protein, adipocyte asscociated 1 protein-coding TPRA1 transmembrane protein, adipocyte asscociated 1 O G protein-coupled receptor 175|integral membrane protein GPR175|seven transmembrane domain orphan receptor|transmembrane domain protein regulated in adipocytes 40 kDa|transmembrane protein 227|transmembrane protein adipocyte-associated 1|transmembrane protein, adipocyte associated 1 20121230 -9606 131616 TMEM42 - - HGNC:28444|Ensembl:ENSG00000169964|HPRD:15540|Vega:OTTHUMG00000133092 3 3p21.31 transmembrane protein 42 protein-coding TMEM42 transmembrane protein 42 O - 20121230 -9606 131669 UROC1 - HMFN0320 HGNC:26444|MIM:613012|Ensembl:ENSG00000159650|HPRD:08712|Vega:OTTHUMG00000162753 3 3q21.3 urocanate hydratase 1 protein-coding UROC1 urocanate hydratase 1 O imidazolonepropionate hydrolase|urocanase 1|urocanase domain containing 1|urocanate hydratase 20121230 -9606 131831 FAM194A - C3orf44 HGNC:28602|Ensembl:ENSG00000163645|HPRD:17543|Vega:OTTHUMG00000133569 3 3q25.1 family with sequence similarity 194, member A protein-coding FAM194A family with sequence similarity 194, member A O protein FAM194A 20121230 -9606 131870 NUDT16 - - HGNC:26442|Ensembl:ENSG00000198585|HPRD:08097|Vega:OTTHUMG00000159623 3 3q22.1 nudix (nucleoside diphosphate linked moiety X)-type motif 16 protein-coding NUDT16 nudix (nucleoside diphosphate linked moiety X)-type motif 16 O U8 snoRNA-binding protein H29K|U8 snoRNA-decapping enzyme|m7GpppN-mRNA hydrolase|nucleoside diphosphate-linked moiety X motif 16|nudix motif 16 20121230 -9606 131873 COL6A6 - - HGNC:27023|Ensembl:ENSG00000206384|Vega:OTTHUMG00000159653 3 3q22.1 collagen, type VI, alpha 6 protein-coding COL6A6 collagen, type VI, alpha 6 O collagen alpha-6(VI) chain 20121230 -9606 131890 GRK7 - GPRK7 HGNC:17031|MIM:606987|Ensembl:ENSG00000114124|HPRD:07378|Vega:OTTHUMG00000159068 3 3q24 G protein-coupled receptor kinase 7 protein-coding GRK7 G protein-coupled receptor kinase 7 O g protein-coupled receptor kinase GRK7 20121230 -9606 131909 FAM172BP - FAM172B HGNC:34336 3 3q12.3 family with sequence similarity 172, member B pseudogene pseudo FAM172BP family with sequence similarity 172, member B, pseudogene O - 20121230 -9606 131920 TMEM207 UNQ846/PRO1784 UNQ846 HGNC:33705|MIM:614786|Ensembl:ENSG00000198398|HPRD:15621|Vega:OTTHUMG00000156213 3 3q28 transmembrane protein 207 protein-coding TMEM207 transmembrane protein 207 O SRSR846 20121230 -9606 131961 IMPDH1P8 - - HGNC:33963 3 3p25.1 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 8 pseudo IMPDH1P8 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 8 O - 20121230 -9606 131965 METTL6 - - HGNC:28343|Ensembl:ENSG00000206562|HPRD:14494|Vega:OTTHUMG00000156431 3 3p25.1 methyltransferase like 6 protein-coding METTL6 methyltransferase like 6 O methyltransferase-like protein 6 20121230 -9606 131973 RHBDF1P1 - - HGNC:44499 3 3p25.1 rhomboid 5 homolog 1 (Drosophila) pseudogene 1 pseudo RHBDF1P1 rhomboid 5 homolog 1 (Drosophila) pseudogene 1 O - 20121230 -9606 132001 TAMM41 - C3orf31|RAM41|TAM41 HGNC:25187|MIM:614948|Ensembl:ENSG00000144559|HPRD:14452|Vega:OTTHUMG00000129741 3 3p25.2 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) protein-coding TAMM41 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) O MMP37-like protein, mitochondrial|mitochondrial translocator assembly and maintenance protein 41 homolog 20121230 -9606 132014 IL17RE UNQ3056/PRO9877 - HGNC:18439|MIM:614995|Ensembl:ENSG00000163701|HPRD:17143|Vega:OTTHUMG00000128649 3 3p25.3 interleukin 17 receptor E protein-coding IL17RE interleukin 17 receptor E O IL-17 receptor E|interleukin-17 receptor E 20121230 -9606 132112 RTP1 - - HGNC:28580|MIM:609137|Ensembl:ENSG00000175077|HPRD:16449|Vega:OTTHUMG00000149886 3 3q27.3 receptor (chemosensory) transporter protein 1 protein-coding RTP1 receptor (chemosensory) transporter protein 1 O receptor transporter protein 1|receptor transporting protein 1|receptor-transporting protein 1 20121230 -9606 132141 IQCF1 - - HGNC:28607|Ensembl:ENSG00000173389|HPRD:17155|Vega:OTTHUMG00000156908 3 3p21.2 IQ motif containing F1 protein-coding IQCF1 IQ motif containing F1 O IQ domain-containing protein F1 20121230 -9606 132158 GLYCTK LP5910 HBEBP2|HBEBP4|HBeAgBP4A HGNC:24247|MIM:610516|Ensembl:ENSG00000168237|HPRD:13586|Vega:OTTHUMG00000158380 3 3p21.1 glycerate kinase protein-coding GLYCTK glycerate kinase O HBeAg binding protein 4|HBeAg-binding protein 2 20121230 -9606 132160 PPM1M - PP2C-eta|PP2CE|PP2Ceta HGNC:26506|MIM:608979|Ensembl:ENSG00000164088|HPRD:12350|Vega:OTTHUMG00000153046 3 3p21.2 protein phosphatase, Mg2+/Mn2+ dependent, 1M protein-coding PPM1M protein phosphatase, Mg2+/Mn2+ dependent, 1M O protein phosphatase 1M|protein phosphatase 1M (PP2C domain containing)|protein phosphatase 2C eta-2|protein phosphatase 2C isoform eta 20121230 -9606 132200 C3orf49 - - HGNC:25190 3 3p14.1 chromosome 3 open reading frame 49 miscRNA C3orf49 chromosome 3 open reading frame 49 O - 20121230 -9606 132203 SNTN - S100A1L|S100AL|sentan HGNC:33706|Ensembl:ENSG00000188817|Vega:OTTHUMG00000158766 3 3p14.2 sentan, cilia apical structure protein protein-coding SNTN sentan, cilia apical structure protein O S100A-like protein|sentan 20121230 -9606 132204 SYNPR - SPO HGNC:16507|Ensembl:ENSG00000163630|HPRD:15458|Vega:OTTHUMG00000158699 3 3p14.2 synaptoporin protein-coding SYNPR synaptoporin O - 20121230 -9606 132228 C3orf45 - - HGNC:26781|Ensembl:ENSG00000179564|HPRD:08789|Vega:OTTHUMG00000156938 3 3p21.31 chromosome 3 open reading frame 45 protein-coding C3orf45 chromosome 3 open reading frame 45 O uncharacterized protein C3orf45 20121230 -9606 132241 RPL32P3 - - HGNC:27024 3 3q21.3 ribosomal protein L32 pseudogene 3 pseudo RPL32P3 ribosomal protein L32 pseudogene 3 O - 20121230 -9606 132243 H1FOO - osH1 HGNC:18463|Ensembl:ENSG00000178804|HPRD:13621|Vega:OTTHUMG00000159541 3 3q22.1 H1 histone family, member O, oocyte-specific protein-coding H1FOO H1 histone family, member O, oocyte-specific O histone H1oo|oocyte-specific histone H1|oocyte-specific linker histone H1 20121230 -9606 132250 DAP4C - - - 3 3p12.3 death-associated protein 4C protein-coding - - - - 20100404 -9606 132299 OCIAD2 - - HGNC:28685|Ensembl:ENSG00000145247|HPRD:14873|Vega:OTTHUMG00000128626 4 4p11 OCIA domain containing 2 protein-coding OCIAD2 OCIA domain containing 2 O OCIA domain-containing protein 2|ovarian carcinoma immunoreactive antigen|ovarian carcinoma immunoreactive antigen-like protein 20121230 -9606 132320 SCLT1 - CAP-1A|CAP1A|hCAP-1A HGNC:26406|MIM:611399|Ensembl:ENSG00000151466|HPRD:08700|Vega:OTTHUMG00000133346 4 4q28.2 sodium channel and clathrin linker 1 protein-coding SCLT1 sodium channel and clathrin linker 1 O sodium channel-associated protein 1 20121230 -9606 132321 C4orf33 - - HGNC:27025|Ensembl:ENSG00000151470|HPRD:14049|Vega:OTTHUMG00000133347 4 4q28.2 chromosome 4 open reading frame 33 protein-coding C4orf33 chromosome 4 open reading frame 33 O UPF0462 protein C4orf33 20121230 -9606 132332 TMEM155 - - HGNC:26418|Ensembl:ENSG00000164112|HPRD:08089|Vega:OTTHUMG00000133035 4 4q27 transmembrane protein 155 protein-coding TMEM155 transmembrane protein 155 O protein TMEM155 20121230 -9606 132386 LOC132386 - - - 4 4q34.3 epithelial cell adhesion molecule pseudogene pseudo - - - - 20121230 -9606 132391 KRT18P21 - - HGNC:33389 4 4q26 keratin 18 pseudogene 21 pseudo KRT18P21 keratin 18 pseudogene 21 O - 20121230 -9606 132430 PABPC4L hCG_1647909 - HGNC:31955|Ensembl:ENSG00000254535|Vega:OTTHUMG00000161292 4 4q28.3 poly(A) binding protein, cytoplasmic 4-like protein-coding PABPC4L poly(A) binding protein, cytoplasmic 4-like O PABP-4-like|polyadenylate-binding protein 4-like 20121230 -9606 132556 BTF3P13 - BTF3L3|HUMBTFD HGNC:1128|MIM:603739 4 4q23 basic transcription factor 3 pseudogene 13 pseudo BTF3P13 basic transcription factor 3 pseudogene 13 O - 20121230 -9606 132612 ADAD1 - Tenr HGNC:30713|MIM:614130|Ensembl:ENSG00000164113|HPRD:15594|Vega:OTTHUMG00000150128 4 4q27 adenosine deaminase domain containing 1 (testis-specific) protein-coding ADAD1 adenosine deaminase domain containing 1 (testis-specific) O adenosine deaminase domain-containing protein 1|testis nuclear RNA-binding protein 20121230 -9606 132625 ZFP42 - REX1|ZNF754 HGNC:30949|MIM:614572|Ensembl:ENSG00000179059|HPRD:15726|Vega:OTTHUMG00000160235 4 4q35.2 ZFP42 zinc finger protein protein-coding ZFP42 ZFP42 zinc finger protein O REX-1|REX1 transcription factor|hREX-1|reduced expression protein 1|zfp-42|zinc finger protein 42 homolog|zinc finger protein 754 20121230 -9606 132660 LIN54 - CXCDC1|JC8.6|MIP120 HGNC:25397|MIM:613367|Ensembl:ENSG00000189308|HPRD:13218|Vega:OTTHUMG00000130287 4 4q21.22 lin-54 homolog (C. elegans) protein-coding LIN54 lin-54 homolog (C. elegans) O CXC domain containing 1|CXC domain-containing protein 1|protein lin-54 homolog 20121230 -9606 132671 SPATA18 - Mieap|SPETEX1 HGNC:29579|MIM:612814|Ensembl:ENSG00000163071|HPRD:14050|Vega:OTTHUMG00000128698 4 4q12 spermatogenesis associated 18 protein-coding SPATA18 spermatogenesis associated 18 O mitochondria-eating protein|spermatogenesis associated 18 homolog|spermatogenesis-associated protein 18 20121230 -9606 132719 LOC132719 - - - 4 4q25 tubulin, beta 8 class VIII pseudogene pseudo - - - - 20121230 -9606 132720 C4orf32 - - HGNC:26813|Ensembl:ENSG00000174749|HPRD:08252|Vega:OTTHUMG00000132851 4 4q25 chromosome 4 open reading frame 32 protein-coding C4orf32 chromosome 4 open reading frame 32 O uncharacterized protein C4orf32 20121230 -9606 132724 TMPRSS11B - - HGNC:25398|Ensembl:ENSG00000185873|HPRD:13219|Vega:OTTHUMG00000129301 4 4q13.2 transmembrane protease, serine 11B protein-coding TMPRSS11B transmembrane protease, serine 11B O airway trypsin-like protease 5|transmembrane protease serine 11B 20121230 -9606 132789 GNPDA2 - GNP2|SB52 HGNC:21526|MIM:613222|Ensembl:ENSG00000163281|HPRD:13594|Vega:OTTHUMG00000099415 4 4p12 glucosamine-6-phosphate deaminase 2 protein-coding GNPDA2 glucosamine-6-phosphate deaminase 2 O glcN6P deaminase 2|glucosamine-6-phosphate isomerase 2|glucosamine-6-phosphate isomerase SB52 20121230 -9606 132817 RBM48P1 - - HGNC:44054 4 4q28.1 RNA binding motif protein 48 pseudogene 1 pseudo RBM48P1 RNA binding motif protein 48 pseudogene 1 O - 20121230 -9606 132851 SPATA4 - SPEF1B|TSARG2 HGNC:17333|MIM:609879|Ensembl:ENSG00000150628|HPRD:15429|Vega:OTTHUMG00000160788 4 4q34.2 spermatogenesis associated 4 protein-coding SPATA4 spermatogenesis associated 4 O spermatogenesis-associated protein 4|testis and spermatogenesis cell related protein 2|testis and spermatogenesis cell-related protein 2|testis spermatocyte apoptosis-related gene 2 protein 20121230 -9606 132864 CPEB2 - CPE-BP2|CPEB-2|hCPEB-2 HGNC:21745|MIM:610605|Ensembl:ENSG00000137449|HPRD:16744|Vega:OTTHUMG00000090669 4 4p15.33 cytoplasmic polyadenylation element binding protein 2 protein-coding CPEB2 cytoplasmic polyadenylation element binding protein 2 O CPE-binding protein 2|cytoplasmic polyadenylation element-binding protein 2 20121230 -9606 132884 EVC2 - LBN HGNC:19747|MIM:607261|Ensembl:ENSG00000173040|HPRD:06269|Vega:OTTHUMG00000125493 4 4p16.2-p16.1 Ellis van Creveld syndrome 2 protein-coding EVC2 Ellis van Creveld syndrome 2 O ellis-van Creveld syndrome protein 2|limbin 20121230 -9606 132946 ARL9 - - HGNC:23592|MIM:612405|Ensembl:ENSG00000196503|HPRD:12486 4 4q12 ADP-ribosylation factor-like 9 protein-coding ARL9 ADP-ribosylation factor-like 9 O ADP-ribosylation factor-like protein 9 20121230 -9606 132949 AASDH HSPC318 ACSF4|LYS2|NRPS1098|NRPS998 HGNC:23993|MIM:614365|Ensembl:ENSG00000157426|HPRD:12398|Vega:OTTHUMG00000128841 4 4q12 aminoadipate-semialdehyde dehydrogenase protein-coding AASDH aminoadipate-semialdehyde dehydrogenase O 2-aminoadipic 6-semialdehyde dehydrogenase|acyl-CoA synthetase family member 4|non-ribosomal peptide synthetase 1098|non-ribosomal peptide synthetase 998 20121230 -9606 132954 PDCL2 - GCPHLP HGNC:29524|MIM:611676|Ensembl:ENSG00000163440|HPRD:15109|Vega:OTTHUMG00000160674 4 4q12 phosducin-like 2 protein-coding PDCL2 phosducin-like 2 O phosducin-like protein 2 20121230 -9606 132989 C4orf36 - - HGNC:28386|Ensembl:ENSG00000163633|HPRD:14511|Vega:OTTHUMG00000130597 4 4q21.3 chromosome 4 open reading frame 36 protein-coding C4orf36 chromosome 4 open reading frame 36 O uncharacterized protein C4orf36 20121230 -9606 133015 PACRGL - C4orf28 HGNC:28442|Ensembl:ENSG00000163138|HPRD:14537|Vega:OTTHUMG00000128550 4 4p15.31 PARK2 co-regulated-like protein-coding PACRGL PARK2 co-regulated-like O PACRG-like protein 20121230 -9606 133022 TRAM1L1 - - HGNC:28371|Ensembl:ENSG00000174599|HPRD:11643|Vega:OTTHUMG00000132956 4 4q26 translocation associated membrane protein 1-like 1 protein-coding TRAM1L1 translocation associated membrane protein 1-like 1 O translocating chain-associated membrane protein 1-like 1 20121230 -9606 133060 OTOP1 - - HGNC:19656|MIM:607806|Ensembl:ENSG00000163982|HPRD:07421|Vega:OTTHUMG00000090301 4 4p16.3 otopetrin 1 protein-coding OTOP1 otopetrin 1 O otopetrin-1 20121230 -9606 133083 LOC133083 - - - 4 4q22.1 peptidase (mitochondrial processing) alpha pseudogene pseudo - - - - 20121230 -9606 133121 ENPP6 UNQ1889/PRO4334 NPP6 HGNC:23409|Ensembl:ENSG00000164303|HPRD:16863|Vega:OTTHUMG00000160617 4 4q35.1 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 O B830047L21Rik|E-NPP 6|NPP-6|choline-specific glycerophosphodiester phosphodiesterase|ectonucleotide pyrophosphatase/phosphodiesterase family member 6|glycerophosphocholine cholinephosphodiesterase 20121230 -9606 133150 SULT1D1P - SULT1D1 HGNC:30659 4 4q13.3 sulfotransferase family, cytosolic, 1D, member 1, pseudogene pseudo SULT1D1P sulfotransferase family, cytosolic, 1D, member 1, pseudogene O - 20121230 -9606 133283 EEF1A1P13 - EEF1AL11 HGNC:3196 5 5p15.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 13 pseudo EEF1A1P13 eukaryotic translation elongation factor 1 alpha 1 pseudogene 13 O - 20121230 -9606 133308 SLC9B2 - NHA2|NHE10|NHEDC2 HGNC:25143|MIM:611789|Ensembl:ENSG00000164038|HPRD:14051|Vega:OTTHUMG00000131125 4 4q24 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 protein-coding SLC9B2 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 O NHE domain-containing protein 2|Na(+)/H(+) exchanger-like domain-containing protein 2|Na+/H+ exchanger domain containing 2|mitochondrial Na(+)/H(+) exchanger NHA2|mitochondrial sodium/hydrogen exchanger 9B2|mitochondrial sodium/hydrogen exchanger NHA2|sodium/hydrogen exchanger-like domain-containing protein 2|solute carrier family 9 subfamily B member 2|solute carrier family 9, subfamily B (cation proton antiporter 2), member 2 20121230 -9606 133332 LOC133332 - - - 4 4q32.2 mitochondrial ribosomal protein S5 pseudogene pseudo - - - - 20121230 -9606 133383 SETD9 - C5orf35 HGNC:28508|Ensembl:ENSG00000155542|HPRD:14572|Vega:OTTHUMG00000059485 5 5q11.2 SET domain containing 9 protein-coding SETD9 SET domain containing 9 O SET domain-containing protein 9 20121230 -9606 133396 IL31RA UNQ6368/PRO21073/PRO21384 CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R HGNC:18969|MIM:609510|Ensembl:ENSG00000164509|HPRD:17145|Vega:OTTHUMG00000097045 5 5q11.2 interleukin 31 receptor A protein-coding IL31RA interleukin 31 receptor A O IL-31 receptor subunit alpha|IL-31R subunit alpha|class I cytokine receptor|cytokine receptor-like 3|gp130-like monocyte receptor|interleukin-31 receptor subunit alpha|soluble type I cytokine receptor CRL3|zcytoR17 20121230 -9606 133418 EMB - - HGNC:30465|Ensembl:ENSG00000170571|HPRD:13271|Vega:OTTHUMG00000131161 5 5q11.1 embigin protein-coding EMB embigin O embigin homolog 20121230 -9606 133482 SLCO6A1 - CT48|GST|OATP6A1|OATPY HGNC:23613|MIM:613365|Ensembl:ENSG00000205359|HPRD:15400|Vega:OTTHUMG00000162759 5 5q21.1 solute carrier organic anion transporter family, member 6A1 protein-coding SLCO6A1 solute carrier organic anion transporter family, member 6A1 O OATP-I|cancer/testis antigen 48|gonad-specific transporter|organic anion-transporting polypeptide 6A1|organic anion-transporting polypeptide I|solute carrier family 21 member 19|solute carrier organic anion transporter family member 6A1|testis-specific organic anion transporter 20121230 -9606 133491 C5orf47 - - HGNC:27026|Ensembl:ENSG00000185056|Vega:OTTHUMG00000163349 5 5q35.2 chromosome 5 open reading frame 47 protein-coding C5orf47 chromosome 5 open reading frame 47 O uncharacterized protein C5orf47 20121230 -9606 133522 PPARGC1B - ERRL1|PERC|PGC-1(beta)|PGC1B HGNC:30022|MIM:608886|Ensembl:ENSG00000155846|HPRD:10594|Vega:OTTHUMG00000130055 5 5q32 peroxisome proliferator-activated receptor gamma, coactivator 1 beta protein-coding PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta O PGC-1-related estrogen receptor alpha coactivator|PPAR-gamma coactivator 1-beta|PPARGC-1-beta|peroxisome proliferator-activated receptor gamma coactivator 1-beta 20121230 -9606 133558 MROH2B - HEATR7B2 HGNC:26857|Ensembl:ENSG00000171495|HPRD:08808|Vega:OTTHUMG00000162151 5 5p13.1 maestro heat-like repeat family member 2B protein-coding MROH2B maestro heat-like repeat family member 2B O HEAT repeat family member 7B2|HEAT repeat family member B2|HEAT repeat-containing protein 7B2 20121230 -9606 133569 RPS10P12 - RPS10_5_559 HGNC:36662 5 5q11.1 ribosomal protein S10 pseudogene 12 pseudo RPS10P12 ribosomal protein S10 pseudogene 12 O - 20121230 -9606 133584 EGFLAM - AGRINL|AGRNL HGNC:26810|Ensembl:ENSG00000164318|HPRD:13433|Vega:OTTHUMG00000131139 5 5p13.2-p13.1 EGF-like, fibronectin type III and laminin G domains protein-coding EGFLAM EGF-like, fibronectin type III and laminin G domains O EGF-like, fibronectin type-III and laminin G-like domain-containing protein|agrin-like protein|pikachurin 20121230 -9606 133609 RPLP1P7 hCG_1818237 RPLP1_4_611 HGNC:36156 5 5q23.2 ribosomal protein, large, P1 pseudogene 7 pseudo RPLP1P7 ribosomal protein, large, P1 pseudogene 7 O - 20121230 -9606 133615 MRPS5P3 - - HGNC:29778 5 5q23.2 mitochondrial ribosomal protein S5 pseudogene 3 pseudo MRPS5P3 mitochondrial ribosomal protein S5 pseudogene 3 O - 20121230 -9606 133619 PRRC1 - - HGNC:28164|Ensembl:ENSG00000164244|HPRD:14052|Vega:OTTHUMG00000128982 5 5q23.2 proline-rich coiled-coil 1 protein-coding PRRC1 proline-rich coiled-coil 1 O proline-rich and coiled-coil-containing protein 1|protein PRRC1 20121230 -9606 133629 RPL11P2 - RPL11_1_612 HGNC:36983 5 5q23.3 ribosomal protein L11 pseudogene 2 pseudo RPL11P2 ribosomal protein L11 pseudogene 2 O - 20121230 -9606 133686 NADKD1 - C5orf33 HGNC:26404|Ensembl:ENSG00000152620|HPRD:08088|Vega:OTTHUMG00000131105 5 5p13.2 NAD kinase domain containing 1 protein-coding NADKD1 NAD kinase domain containing 1 O NAD kinase domain-containing protein 1 20121230 -9606 133688 UGT3A1 - - HGNC:26625|Ensembl:ENSG00000145626|HPRD:08175|Vega:OTTHUMG00000131107 5 5p13.2 UDP glycosyltransferase 3 family, polypeptide A1 protein-coding UGT3A1 UDP glycosyltransferase 3 family, polypeptide A1 O UDP-glucuronosyltransferase 3A1|UDPGT 3A1 20121230 -9606 133690 CAPSL - - HGNC:28375|Ensembl:ENSG00000152611|HPRD:14506|Vega:OTTHUMG00000131109 5 5p13.2 calcyphosine-like protein-coding CAPSL calcyphosine-like O calcyphosin-like protein 20121230 -9606 133746 JMY - WHDC1L3 HGNC:28916|MIM:604279|Ensembl:ENSG00000152409|HPRD:05045|Vega:OTTHUMG00000131301 5 5q14.1 junction mediating and regulatory protein, p53 cofactor protein-coding JMY junction mediating and regulatory protein, p53 cofactor O WAS protein homology region 2 domain containing 1-like 3|junction-mediating and -regulatory protein|junction-mediating and regulatory protein 20121230 -9606 133748 RPL7AP32 - RPL7A_8_583 HGNC:36415 5 5q14.1 ribosomal protein L7a pseudogene 32 pseudo RPL7AP32 ribosomal protein L7a pseudogene 32 O - 20121230 -9606 133789 LOC133789 - - - 5 5q14.3 RAB5C, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 133790 RPS18P7 - RPS18_4_595 HGNC:35874 5 5q14.3 ribosomal protein S18 pseudogene 7 pseudo RPS18P7 ribosomal protein S18 pseudogene 7 O - 20121230 -9606 133874 C5orf58 - - HGNC:37272|Ensembl:ENSG00000234511|Vega:OTTHUMG00000163122 5 5q35.1 chromosome 5 open reading frame 58 protein-coding C5orf58 chromosome 5 open reading frame 58 O putative uncharacterized protein C5orf58 20121230 -9606 133923 ZNF474 - - HGNC:23245|Ensembl:ENSG00000164185|HPRD:13411|Vega:OTTHUMG00000128911 5 5q23.2 zinc finger protein 474 protein-coding ZNF474 zinc finger protein 474 O 4933409D10Rik|TSZFP|testis-specific zinc finger protein 20121230 -9606 133957 CCDC127 - - HGNC:30520|HPRD:14053 5 5p15.33 coiled-coil domain containing 127 protein-coding CCDC127 coiled-coil domain containing 127 O coiled-coil domain-containing protein 127 20121230 -9606 134008 MRPL11P2 - - HGNC:29694 5 5q31.3 mitochondrial ribosomal protein L11 pseudogene 2 pseudo MRPL11P2 mitochondrial ribosomal protein L11 pseudogene 2 O - 20121230 -9606 134082 OR2AI1P - - HGNC:15063 5 5q35.3 olfactory receptor, family 2, subfamily AI, member 1 pseudogene pseudo OR2AI1P olfactory receptor, family 2, subfamily AI, member 1 pseudogene O - 20121230 -9606 134083 OR2Y1 - OR5-2 HGNC:14837|Ensembl:ENSG00000174339|HPRD:17716|Vega:OTTHUMG00000162237 5 5q35.3 olfactory receptor, family 2, subfamily Y, member 1 protein-coding OR2Y1 olfactory receptor, family 2, subfamily Y, member 1 O olfactory receptor 2Y1|olfactory receptor OR5-2 20121230 -9606 134111 UBE2QL1 - - HGNC:37269|Ensembl:ENSG00000215218|Vega:OTTHUMG00000161683 5 5p15.31 ubiquitin-conjugating enzyme E2Q family-like 1 protein-coding UBE2QL1 ubiquitin-conjugating enzyme E2Q family-like 1 O ubiquitin-conjugating enzyme E2Q-like protein 1 20121230 -9606 134121 C5orf49 - - HGNC:27028|Ensembl:ENSG00000215217|Vega:OTTHUMG00000161897 5 5p15.31 chromosome 5 open reading frame 49 protein-coding C5orf49 chromosome 5 open reading frame 49 O uncharacterized protein C5orf49 20121230 -9606 134145 FAM173B - JS-2 HGNC:27029|Ensembl:ENSG00000150756|HPRD:14054|Vega:OTTHUMG00000161771 5 5p15.2 family with sequence similarity 173, member B protein-coding FAM173B family with sequence similarity 173, member B O protein FAM173B 20121230 -9606 134147 CMBL - JS-1 HGNC:25090|MIM:613379|Ensembl:ENSG00000164237|HPRD:14055|Vega:OTTHUMG00000131043 5 5p15.2 carboxymethylenebutenolidase homolog (Pseudomonas) protein-coding CMBL carboxymethylenebutenolidase homolog (Pseudomonas) O carboxymethylenebutenolidase homolog|carboxymethylenebutenolidase-like (Pseudomonas) 20121230 -9606 134187 POU5F2 - SPRM-1 HGNC:26367|Ensembl:ENSG00000248483|HPRD:08695|Vega:OTTHUMG00000162644 5 5q15 POU domain class 5, transcription factor 2 protein-coding POU5F2 POU domain class 5, transcription factor 2 O POU domain, class 5, transcription factor 2|sperm 1 POU domain transcription factor 20121230 -9606 134218 DNAJC21 - DNAJA5|GS3|JJJ1 HGNC:27030|Ensembl:ENSG00000168724|HPRD:14056|Vega:OTTHUMG00000074103 5 5p13.2 DnaJ (Hsp40) homolog, subfamily C, member 21 protein-coding DNAJC21 DnaJ (Hsp40) homolog, subfamily C, member 21 O DnaJ homology subfamily A member 5|JJJ1 DnaJ domain protein homolog|dnaJ homolog subfamily A member 5|dnaJ homolog subfamily C member 21 20121230 -9606 134265 AFAP1L1 - - HGNC:26714|MIM:614410|Ensembl:ENSG00000157510|HPRD:16943|Vega:OTTHUMG00000163441 5 5q32 actin filament associated protein 1-like 1 protein-coding AFAP1L1 actin filament associated protein 1-like 1 O AFAP1-like protein 1|actin filament-associated protein 1-like 1 20121230 -9606 134266 GRPEL2 - Mt-GrpE#2 HGNC:21060|Ensembl:ENSG00000164284|HPRD:17079|Vega:OTTHUMG00000130048 5 5q32 GrpE-like 2, mitochondrial (E. coli) protein-coding GRPEL2 GrpE-like 2, mitochondrial (E. coli) O grpE protein homolog 2, mitochondrial 20121230 -9606 134285 TMEM171 - PRP2 HGNC:27031|Ensembl:ENSG00000157111|HPRD:14057|Vega:OTTHUMG00000131269 5 5q13.2 transmembrane protein 171 protein-coding TMEM171 transmembrane protein 171 O proline-rich protein PRP2 20121230 -9606 134288 TMEM174 - - HGNC:28187|MIM:614909|Ensembl:ENSG00000164325|HPRD:14432|Vega:OTTHUMG00000131268 5 5q13.2 transmembrane protein 174 protein-coding TMEM174 transmembrane protein 174 O - 20121230 -9606 134353 LSM11 - - HGNC:30860|Ensembl:ENSG00000155858|HPRD:11289|Vega:OTTHUMG00000130255 5 5q33.3 LSM11, U7 small nuclear RNA associated protein-coding LSM11 LSM11, U7 small nuclear RNA associated O 2210404M20Rik|LSM11 homolog, U7 small nuclear RNA associated|U7 snRNA-associated Sm-like protein LSm11 20121230 -9606 134359 POC5 - C5orf37 HGNC:26658|Ensembl:ENSG00000152359|HPRD:08188|Vega:OTTHUMG00000162487 5 5q13.3 POC5 centriolar protein homolog (Chlamydomonas) protein-coding POC5 POC5 centriolar protein homolog (Chlamydomonas) O centrosomal protein POC5|hPOC5|protein of centriole 5|proteome of centriole 5 20121230 -9606 134391 GPR151 - GALR4|GALRL|GPCR|PGR7 HGNC:23624|Ensembl:ENSG00000173250|HPRD:17065|Vega:OTTHUMG00000163444 5 5q32 G protein-coupled receptor 151 protein-coding GPR151 G protein-coupled receptor 151 O G-protein coupled receptor PGR7|GPCR-2037|galanin receptor 4|probable G-protein coupled receptor 151|putative G-protein coupled receptor 20121230 -9606 134429 STARD4 - - HGNC:18058|MIM:607049|Ensembl:ENSG00000164211|HPRD:06133|Vega:OTTHUMG00000128793 5 5q22.1 StAR-related lipid transfer (START) domain containing 4 protein-coding STARD4 StAR-related lipid transfer (START) domain containing 4 O START domain containing 4 sterol-regulated|START domain containing 4, sterol regulated|START domain-containing protein 4|stAR-related lipid transfer protein 4 20121230 -9606 134430 WDR36 - GLC1G|TA-WDRP|TAWDRP|UTP21 HGNC:30696|MIM:609669|Ensembl:ENSG00000134987|HPRD:10305|Vega:OTTHUMG00000128790 5 5q22.1 WD repeat domain 36 protein-coding WDR36 WD repeat domain 36 O T-cell activation WD repeat protein|T-cell activation WD repeat-containing protein|WD repeat-containing protein 36 20121230 -9606 134466 ZNF300P1 - - HGNC:27032 5 5q33.1 zinc finger protein 300 pseudogene 1 pseudo ZNF300P1 zinc finger protein 300 pseudogene 1 O - 20121230 -9606 134490 MRP63P6 - - HGNC:29689 5 5q34 mitochondrial ribosomal protein 63 pseudogene 6 pseudo MRP63P6 mitochondrial ribosomal protein 63 pseudogene 6 O - 20121230 -9606 134492 NUDCD2 - - HGNC:30535|Ensembl:ENSG00000170584|HPRD:14058|Vega:OTTHUMG00000130378 5 5q34 NudC domain containing 2 protein-coding NUDCD2 NudC domain containing 2 O NudC-like protein 2|nudC domain-containing protein 2 20121230 -9606 134505 EIF3KP1 - - HGNC:44016 5 5q21.1 eukaryotic translation initiation factor 3, subunit K pseudogene 1 pseudo EIF3KP1 eukaryotic translation initiation factor 3, subunit K pseudogene 1 O - 20121230 -9606 134510 UBLCP1 - CPUB1 HGNC:28110|MIM:609867|Ensembl:ENSG00000164332|HPRD:08318|Vega:OTTHUMG00000130305 5 5q33.3 ubiquitin-like domain containing CTD phosphatase 1 protein-coding UBLCP1 ubiquitin-like domain containing CTD phosphatase 1 O CTD phosphatase-like with ubiquitin domain 1|CTD-like phosphatase domain-containing protein|nuclear proteasome inhibitor UBLCP1|ubiquitin-like domain-containing CTD phosphatase 1 20121230 -9606 134526 ACOT12 - CACH-1|Cach|STARD15|THEAL HGNC:24436|MIM:614315|Ensembl:ENSG00000172497|HPRD:16680|Vega:OTTHUMG00000131305 5 5q14.1 acyl-CoA thioesterase 12 protein-coding ACOT12 acyl-CoA thioesterase 12 O START domain-containing protein 15|StAR-related lipid transfer (START) domain containing 15|acyl-CoA thioester hydrolase 12|acyl-coenzyme A thioesterase 12|cytoplasmic acetyl-CoA hydrolase 1|cytosolic acetyl-CoA hydrolase|hCACH-1 20121230 -9606 134548 SOWAHA - ANKRD43 HGNC:27033|Ensembl:ENSG00000198944|HPRD:14059|Vega:OTTHUMG00000059844 5 5q31.1 sosondowah ankyrin repeat domain family member A protein-coding SOWAHA sosondowah ankyrin repeat domain family member A O ankyrin repeat domain 43|ankyrin repeat domain-containing protein 43|ankyrin repeat domain-containing protein SOWAHA|protein sosondowah homolog A 20121230 -9606 134549 SHROOM1 - APXL2 HGNC:24084|MIM:611179|Ensembl:ENSG00000164403|HPRD:10655|Vega:OTTHUMG00000059835 5 5q31.1 shroom family member 1 protein-coding SHROOM1 shroom family member 1 O apical protein 2|protein Shroom1 20121230 -9606 134553 C5orf24 - - HGNC:26746|Ensembl:ENSG00000181904|HPRD:08226|Vega:OTTHUMG00000129121 5 5q31.1 chromosome 5 open reading frame 24 protein-coding C5orf24 chromosome 5 open reading frame 24 O UPF0461 protein C5orf24 20121230 -9606 134637 ADAT2 hCG_18099 DEADC1|TAD2|dJ20N2|dJ20N2.1 HGNC:21172|Ensembl:ENSG00000189007|Vega:OTTHUMG00000015725 6 6q24.2 adenosine deaminase, tRNA-specific 2 protein-coding ADAT2 adenosine deaminase, tRNA-specific 2 O adenosine deaminase, tRNA-specific 2, TAD2 homolog|deaminase domain containing 1|deaminase domain-containing protein 1|tRNA-specific adenosine deaminase 2|tRNA-specific adenosine deaminase 2 homolog|tRNA-specific adenosine-34 deaminase subunit ADAT2 20121230 -9606 134701 RIPPLY2 - C6orf159|dJ237I15.1 HGNC:21390|MIM:609891|Ensembl:ENSG00000203877|HPRD:16658|Vega:OTTHUMG00000015117 6 6q14.2 ripply2 homolog (zebrafish) protein-coding RIPPLY2 ripply2 homolog (zebrafish) O protein ripply2 20121230 -9606 134728 IRAK1BP1 - AIP70|SIMPL HGNC:17368|Ensembl:ENSG00000146243|HPRD:17157|Vega:OTTHUMG00000015070 6 6q14-q15 interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding IRAK1BP1 interleukin-1 receptor-associated kinase 1 binding protein 1 O 4921528N06Rik|ActA binding protein 3|interleukin-1 receptor-associated kinase 1-binding protein 1 20121230 -9606 134756 RPL29P1 - RPL29_5_654|dJ336K20B.2 HGNC:21593 6 6p24.3 ribosomal protein L29 pseudogene 1 pseudo RPL29P1 ribosomal protein L29 pseudogene 1 O - 20121230 -9606 134829 CLVS2 RP11-160A10.4 C6orf212|C6orf213|RLBP1L2|bA160A10.4 HGNC:23046|Ensembl:ENSG00000146352|HPRD:16666|Vega:OTTHUMG00000015495 6 6q22.31 clavesin 2 protein-coding CLVS2 clavesin 2 O clavesin-2|retinaldehyde binding protein 1-like 2|retinaldehyde-binding protein 1-like 2 20121230 -9606 134860 TAAR9 - TA3|TAR3|TAR9|TRAR3 HGNC:20977|MIM:608282|Ensembl:ENSG00000237110|HPRD:16308|Vega:OTTHUMG00000015578 6 6q23.2 trace amine associated receptor 9 (gene/pseudogene) protein-coding TAAR9 trace amine associated receptor 9 (gene/pseudogene) O trace amine receptor 3|trace amine receptor 9|trace amine-associated receptor 9 20121230 -9606 134864 TAAR1 - RP11-295F4.9|TA1|TAR1|TRAR1 HGNC:17734|MIM:609333|Ensembl:ENSG00000146399|HPRD:18142|Vega:OTTHUMG00000015583 6 6q23.2 trace amine associated receptor 1 protein-coding TAAR1 trace amine associated receptor 1 O taR-1|trace amine receptor 1|trace amine-associated receptor 1 20121230 -9606 134957 STXBP5 RP11-361F15.4 LGL3|LLGL3|Nbla04300 HGNC:19665|MIM:604586|Ensembl:ENSG00000164506|HPRD:06845|Vega:OTTHUMG00000015766 6 6q24.3 syntaxin binding protein 5 (tomosyn) protein-coding STXBP5 syntaxin binding protein 5 (tomosyn) O lethal(2) giant larvae protein homolog 3|putative protein product of Nbla04300|syntaxin-binding protein 5|tomosyn|tomosyn-1 20121230 -9606 134997 PPIAP29 - - HGNC:43021 6 6p22.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene 29 pseudo PPIAP29 peptidylprolyl isomerase A (cyclophilin A) pseudogene 29 O - 20121230 -9606 135112 NCOA7 RP1-187J11.1 ERAP140|ESNA1|Nbla00052|Nbla10993|dJ187J11.3 HGNC:21081|MIM:609752|Ensembl:ENSG00000111912|HPRD:14814|Vega:OTTHUMG00000015513 6 6q22.32 nuclear receptor coactivator 7 protein-coding NCOA7 nuclear receptor coactivator 7 O 140 kDa estrogen receptor-associated protein|estrogen nuclear receptor coactivator 1|estrogen receptor associated protein 140 kDa|putative protein product of Nbla00052|putative protein product of Nbla10993 20121230 -9606 135114 HINT3 - HINT4 HGNC:18468|MIM:609998|Ensembl:ENSG00000111911|HPRD:17107|Vega:OTTHUMG00000015514 6 6q22.32 histidine triad nucleotide binding protein 3 protein-coding HINT3 histidine triad nucleotide binding protein 3 O HINT-3|HIT-like protein|histidine triad nucleotide-binding protein 3 20121230 -9606 135138 PACRG hCG_1810756 GLUP|HAK005771|PARK2CRG|RP3-495O10.2 HGNC:19152|MIM:608427|Ensembl:ENSG00000112530|HPRD:07465|Vega:OTTHUMG00000016116 6 6q26 PARK2 co-regulated protein-coding PACRG PARK2 co-regulated O molecular chaperone/chaperonin-binding protein|parkin co-regulated gene protein|parkin coregulated gene protein 20121230 -9606 135152 B3GAT2 RP1-104A17.2 GLCATS HGNC:922|MIM:607497|Ensembl:ENSG00000112309|HPRD:06325|Vega:OTTHUMG00000014997 6 6q13 beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) protein-coding B3GAT2 beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) O UDP-glucuronosyltransferase S|UDP-glucuronyltransferase S|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2|glcAT-D|glucuronosyltransferase S|uridine diphosphate glucuronic acid:acceptor glucuronosyltransferase 20121230 -9606 135154 C6orf57 - - HGNC:20957|Ensembl:ENSG00000154079|HPRD:12888|Vega:OTTHUMG00000014992 6 6q13 chromosome 6 open reading frame 57 protein-coding C6orf57 chromosome 6 open reading frame 57 O UPF0369 protein C6orf57 20121230 -9606 135228 CD109 - CPAMD7|RP11-525G3.1 HGNC:21685|MIM:608859|Ensembl:ENSG00000156535|HPRD:10590|Vega:OTTHUMG00000015040 6 6q13 CD109 molecule protein-coding CD109 CD109 molecule O 150 kDa TGF-beta-1-binding protein|C3 and PZP-like alpha-2-macroglobulin domain-containing protein 7|CD109 antigen|Gov platelet alloantigens|activated T-cell marker CD109|p180|platelet-specific Gov antigen|r150 20121230 -9606 135250 RAET1E UNQ1867/PRO4303 LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7 HGNC:16793|MIM:609243|Ensembl:ENSG00000164520|HPRD:16466|Vega:OTTHUMG00000015796 6 6q25.1 retinoic acid early transcript 1E protein-coding RAET1E retinoic acid early transcript 1E O NKG2D ligand 4|RAE-1-like transcript 4|lymphocyte effector toxicity activation ligand 20121230 -9606 135270 COPS5P - - HGNC:24332 6 6q16.1 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) pseudogene pseudo COPS5P COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) pseudogene O - 20121230 -9606 135293 PM20D2 - ACY1L2|bA63L7.3 HGNC:21408|Ensembl:ENSG00000146281|HPRD:16473|Vega:OTTHUMG00000015193 6 6q15 peptidase M20 domain containing 2 protein-coding PM20D2 peptidase M20 domain containing 2 O aminoacylase 1-like 2|aminoacylase 1-like protein 2|aminoacylase-1-like protein 2|peptidase M20 domain-containing protein 2 20121230 -9606 135295 SRSF12 - RP11-63L7.3|SFRS13B|SFRS19|SRrp35 HGNC:21220|Ensembl:ENSG00000154548|HPRD:11605|Vega:OTTHUMG00000015192 6 6q15 serine/arginine-rich splicing factor 12 protein-coding SRSF12 serine/arginine-rich splicing factor 12 O 35 kDa SR repressor protein|SR splicing factor 12|serine-arginine repressor protein (35 kDa)|splicing factor, arginine/serine-rich 13B|splicing factor, arginine/serine-rich 19 20121230 -9606 135398 C6orf141 - - HGNC:21351|Ensembl:ENSG00000197261|HPRD:12852|Vega:OTTHUMG00000014820 6 6p12.3 chromosome 6 open reading frame 141 protein-coding C6orf141 chromosome 6 open reading frame 141 O uncharacterized protein C6orf141 20121230 -9606 135458 HUS1B - RP11-532F6.1 HGNC:16485|MIM:609713|HPRD:13722 6 6p25.3 HUS1 checkpoint homolog b (S. pombe) protein-coding HUS1B HUS1 checkpoint homolog b (S. pombe) O checkpoint protein HUS1B|hHUS1B 20121230 -9606 135644 TRIM40 DAAP-200B17.3 RNF35 HGNC:18736|Ensembl:ENSG00000204614|HPRD:15557|Vega:OTTHUMG00000031083 6 6p22.1 tripartite motif containing 40 protein-coding TRIM40 tripartite motif containing 40 O RING finger protein 35|probable E3 NEDD8-protein ligase|ring finger RNF35|ring finger protein 40|tripartite motif-containing 40|tripartite motif-containing protein 40 20121230 -9606 135656 DPCR1 DADB-160J14.5 PBLT HGNC:21666|MIM:613928|Ensembl:ENSG00000168631|HPRD:16073|Vega:OTTHUMG00000031104 6 6p21.33 diffuse panbronchiolitis critical region 1 protein-coding DPCR1 diffuse panbronchiolitis critical region 1 O diffuse panbronchiolitis critical region protein 1 20121230 -9606 135886 WBSCR28 - - HGNC:23018|MIM:612547|Ensembl:ENSG00000175877|HPRD:15662|Vega:OTTHUMG00000157243 7 7q11.23 Williams-Beuren syndrome chromosome region 28 protein-coding WBSCR28 Williams-Beuren syndrome chromosome region 28 O Williams-Beuren syndrome chromosomal region 28 protein|Williams-Beuren syndrome critical region 28 20121230 -9606 135892 TRIM50 - TRIM50A HGNC:19017|MIM:612548|Ensembl:ENSG00000146755|HPRD:15566|Vega:OTTHUMG00000156805 7 7q11.23 tripartite motif containing 50 protein-coding TRIM50 tripartite motif containing 50 O E3 ubiquitin ligase|E3 ubiquitin-protein ligase TRIM50|tripartite motif protein 50|tripartite motif-containing 50|tripartite motif-containing 50A|tripartite motif-containing protein 50 20121230 -9606 135924 OR9A2 - - HGNC:15093|Ensembl:ENSG00000179468|HPRD:15088|Vega:OTTHUMG00000158386 7 7q34 olfactory receptor, family 9, subfamily A, member 2 protein-coding OR9A2 olfactory receptor, family 9, subfamily A, member 2 O olfactory receptor 9A2|olfactory receptor OR7-2 20121230 -9606 135927 C7orf34 - ctm-1 HGNC:21750|Ensembl:ENSG00000165131|HPRD:12922|Vega:OTTHUMG00000152664 7 7q34 chromosome 7 open reading frame 34 protein-coding C7orf34 chromosome 7 open reading frame 34 O MSSP-binding protein CTM-1|uncharacterized protein C7orf34 20121230 -9606 135932 TMEM139 UNQ1932/PRO4407 - HGNC:22058|Ensembl:ENSG00000178826|HPRD:08298|Vega:OTTHUMG00000152652 7 7q34 transmembrane protein 139 protein-coding TMEM139 transmembrane protein 139 O - 20121230 -9606 135935 NOBOX hCG_20958 OG-2|OG2|OG2X|POF5|TCAG_12042 HGNC:22448|MIM:610934|Ensembl:ENSG00000106410|Vega:OTTHUMG00000158051 7 7q35 NOBOX oogenesis homeobox protein-coding NOBOX NOBOX oogenesis homeobox O homeobox protein NOBOX|newborn ovary homeobox-encoding 20121230 -9606 135941 OR2A14 - OR2A14P|OR2A6|OST182 HGNC:15084|Ensembl:ENSG00000221938|HPRD:14930|Vega:OTTHUMG00000158003 7 7q35 olfactory receptor, family 2, subfamily A, member 14 protein-coding OR2A14 olfactory receptor, family 2, subfamily A, member 14 O olfactory receptor 2A14|olfactory receptor 2A6|olfactory receptor OR7-12|olfactory receptor, family 2, subfamily A, member 14 pseudogene|olfactory receptor, family 2, subfamily A, member 6 20121230 -9606 135942 OR2A15P - OR2A23P|OR2A28P HGNC:15085 7 7q35 olfactory receptor, family 2, subfamily A, member 15 pseudogene pseudo OR2A15P olfactory receptor, family 2, subfamily A, member 15 pseudogene O - 20121230 -9606 135946 OR6B1 - OR7-3|OR7-9 HGNC:8354|Ensembl:ENSG00000221813|HPRD:15055|Vega:OTTHUMG00000157765 7 7q35 olfactory receptor, family 6, subfamily B, member 1 protein-coding OR6B1 olfactory receptor, family 6, subfamily B, member 1 O olfactory receptor 6B1|olfactory receptor 7-3|olfactory receptor OR7-9 20121230 -9606 135948 OR2F2 - OR7-1 HGNC:8247|Ensembl:ENSG00000221910|HPRD:14939|Vega:OTTHUMG00000157768 7 7q35 olfactory receptor, family 2, subfamily F, member 2 protein-coding OR2F2 olfactory receptor, family 2, subfamily F, member 2 O olfactory receptor 2F2|olfactory receptor 7-1|olfactory receptor OR7-6 20121230 -9606 136051 ZNF786 - - HGNC:21806|Ensembl:ENSG00000197362|HPRD:13232|Vega:OTTHUMG00000158975 7 7q36.1 zinc finger protein 786 protein-coding ZNF786 zinc finger protein 786 O - 20121230 -9606 136157 SSU72P8 hCG_1651160 - HGNC:43627 7 7q31.33 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 8 pseudo SSU72P8 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 8 O - 20121230 -9606 136227 EMID2 - COL26A1|EMI6|EMU2|SH2B HGNC:18038|MIM:608927|Ensembl:ENSG00000160963|HPRD:16405|Vega:OTTHUMG00000150033 7 7q22.1 EMI domain containing 2 protein-coding EMID2 EMI domain containing 2 O collagen alpha-1(XXVI) chain|collagen, type XXVI, alpha 1|emilin and multimerin domain-containing protein 2|putative emu2 20121230 -9606 136242 PRSS37 - TRYX2 HGNC:29211|Ensembl:ENSG00000165076|HPRD:17297|Vega:OTTHUMG00000157174 7 7q34 protease, serine, 37 protein-coding PRSS37 protease, serine, 37 O Peptidase S1 domain-containing protein LOC136242|probable inactive serine protease 37|probable inactive trypsin-X2 20121230 -9606 136259 KLF14 - BTEB5 HGNC:23025|MIM:609393|Ensembl:ENSG00000174595|HPRD:13919|Vega:OTTHUMG00000155002 7 7q32.3 Kruppel-like factor 14 protein-coding KLF14 Kruppel-like factor 14 O BTE-binding protein 5|Krueppel-like factor 14|basic transcription element-binding protein 5|transcription factor BTEB5 20121230 -9606 136263 C7orf45 - - HGNC:29580|Ensembl:ENSG00000165120|HPRD:14060|Vega:OTTHUMG00000157844 7 7q32.2 chromosome 7 open reading frame 45 protein-coding C7orf45 chromosome 7 open reading frame 45 O uncharacterized protein C7orf45 20121230 -9606 136288 C7orf57 - - HGNC:22247|Ensembl:ENSG00000164746|Vega:OTTHUMG00000155808 7 7p12.3 chromosome 7 open reading frame 57 protein-coding C7orf57 chromosome 7 open reading frame 57 O uncharacterized protein C7orf57 20121230 -9606 136306 SVOPL - - HGNC:27034|MIM:611700|Ensembl:ENSG00000157703|HPRD:11235|Vega:OTTHUMG00000155870 7 7q34 SVOP-like protein-coding SVOPL SVOP-like O SV2 related protein homolog-like|SV2-related protein-like|SVOP-like protein|putative transporter SVOPL 20121230 -9606 136307 IMPDH1P3 - - HGNC:33958 7 7q33 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 3 pseudo IMPDH1P3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 3 O - 20121230 -9606 136319 MTPN - GCDP|V-1 HGNC:15667|MIM:606484|Ensembl:ENSG00000105887|HPRD:07574|Vega:OTTHUMG00000155627 7 7q33 myotrophin protein-coding MTPN myotrophin O granule cell differentiation protein|protein V-1 20121230 -9606 136332 LRGUK - - HGNC:21964|Ensembl:ENSG00000155530|HPRD:08734|Vega:OTTHUMG00000155320 7 7q33 leucine-rich repeats and guanylate kinase domain containing protein-coding LRGUK leucine-rich repeats and guanylate kinase domain containing O leucine-rich repeat and guanylate kinase domain-containing protein 20121230 -9606 136371 ASB10 - - HGNC:17185|Ensembl:ENSG00000146926|Vega:OTTHUMG00000157013 7 7q36.1 ankyrin repeat and SOCS box containing 10 protein-coding ASB10 ankyrin repeat and SOCS box containing 10 O ankyrin repeat and SOCS box protein 10 20121230 -9606 136540 PRSS3P3 - TRY3 HGNC:43790 7 7q34 protease, serine, 3 pseudogene 3 pseudo PRSS3P3 protease, serine, 3 pseudogene 3 O - 20121230 -9606 136541 PRSS58 UNQ2540/PRO6090 PRSS1|TRY1|TRYX3|UNQ2540 HGNC:39125|Ensembl:ENSG00000258223|HPRD:15572|Vega:OTTHUMG00000158565 7 7q34 protease, serine, 58 protein-coding PRSS58 protease, serine, 58 O serine protease 58|trypsin X3|trypsin-X3 20121230 -9606 136647 MPLKIP - ABHS|C7orf11|ORF20 HGNC:16002|MIM:609188|Ensembl:ENSG00000168303|HPRD:12907|Vega:OTTHUMG00000128797 7 7p14.1 M-phase specific PLK1 interacting protein protein-coding MPLKIP M-phase specific PLK1 interacting protein O M-phase-specific PLK1-interacting protein|Russell-Silver syndrome region|TTD non-photosensitive 1 protein 20121230 -9606 136853 SRCRB4D - S4D-SRCRB|SRCRB-S4D|SSC4D HGNC:14461|MIM:607639|Ensembl:ENSG00000146700|HPRD:06364|Vega:OTTHUMG00000022864 7 7q11.23 scavenger receptor cysteine rich domain containing, group B (4 domains) protein-coding SRCRB4D scavenger receptor cysteine rich domain containing, group B (4 domains) O S4-SRCRB|scavenger receptor cysteine-rich domain-containing group B protein|scavenger receptor cysteine-rich protein SRCRB-S4D 20121230 -9606 136895 C7orf31 - - HGNC:21722|Ensembl:ENSG00000153790|HPRD:12919|Vega:OTTHUMG00000128497 7 7p15.3 chromosome 7 open reading frame 31 protein-coding C7orf31 chromosome 7 open reading frame 31 O uncharacterized protein C7orf31 20121230 -9606 136991 ASZ1 - ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 HGNC:1350|MIM:605797|Ensembl:ENSG00000154438|HPRD:10677|Vega:OTTHUMG00000064565 7 7q31.2 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 O 4933400N19Rik|ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1|ankyrin-like 1|ankyrin-like protein 1|germ cell-specific ankyrin, SAM and basic leucine zipper domain-containing protein 20121230 -9606 137012 PPM1AP1 - - HGNC:30175 8 8p22 protein phosphatase, Mg2+/Mn2+ dependent 1A, pseudogene 1 pseudo PPM1AP1 protein phosphatase, Mg2+/Mn2+ dependent 1A, pseudogene 1 O - 20121230 -9606 137075 CLDN23 hCG_1646163 CLDNL|hCG1646163 HGNC:17591|MIM:609203|Ensembl:ENSG00000253958|HPRD:13069|Vega:OTTHUMG00000163674 8 8p23.1 claudin 23 protein-coding CLDN23 claudin 23 O 2310014B08Rik|claudin-23 20121230 -9606 137107 RPL10AP3 - HsT23218|RPL10A_5_891 HGNC:29803 8 8p12 ribosomal protein L10a pseudogene 3 pseudo RPL10AP3 ribosomal protein L10a pseudogene 3 O - 20121230 -9606 137133 PSAT1P1 - C8orf62 HGNC:15785 8 8q11.21 phosphoserine aminotransferase 1 pseudogene 1 pseudo PSAT1P1 phosphoserine aminotransferase 1 pseudogene 1 O - 20121230 -9606 137196 CCDC26 - RAM HGNC:28416|MIM:613040|HPRD:14523 8 8q24.21 coiled-coil domain containing 26 other CCDC26 coiled-coil domain containing 26 O - 20121221 -9606 137209 ZNF572 - - HGNC:26758|Ensembl:ENSG00000180938|HPRD:15851|Vega:OTTHUMG00000164988 8 8q24.13 zinc finger protein 572 protein-coding ZNF572 zinc finger protein 572 O - 20121230 -9606 137290 MRPL9P1 - - HGNC:29726 8 8q21.11 mitochondrial ribosomal protein L9 pseudogene 1 pseudo MRPL9P1 mitochondrial ribosomal protein L9 pseudogene 1 O - 20121230 -9606 137362 GOT1L1 - - HGNC:28487|Ensembl:ENSG00000169154|HPRD:14558|Vega:OTTHUMG00000164027 8 8p11.23 glutamic-oxaloacetic transaminase 1-like 1 protein-coding GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 O glutamate oxaloacetate transaminase 1-like protein 1|putative aspartate aminotransferase, cytoplasmic 2|transaminase A-like protein 1 20121230 -9606 137392 FAM92A1 - - HGNC:30452|Ensembl:ENSG00000188343|HPRD:14061|Vega:OTTHUMG00000164238 8 8q22.1 family with sequence similarity 92, member A1 protein-coding FAM92A1 family with sequence similarity 92, member A1 O protein FAM92A1 20121230 -9606 137406 MRPS16P1 - - HGNC:29732 8 8q21.3 mitochondrial ribosomal protein S16 pseudogene 1 pseudo MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 O - 20121230 -9606 137492 VPS37A - HCRP1|PQBP2|SPG53 HGNC:24928|MIM:609927|Ensembl:ENSG00000155975|HPRD:13410|Vega:OTTHUMG00000130785 8 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) protein-coding VPS37A vacuolar protein sorting 37 homolog A (S. cerevisiae) O ESCRT-I complex subunit VPS37A|hepatocellular carcinoma-related protein 1|polyglutamine binding protein 2|vacuolar protein sorting-associated protein 37A 20121230 -9606 137529 CKS1BP7 - CKS1|CKS1A HGNC:1999 8 8q21.13 CDC28 protein kinase regulatory subunit 1B pseudogene 7 pseudo CKS1BP7 CDC28 protein kinase regulatory subunit 1B pseudogene 7 O CDC28 protein kinase regulatory subunit 1A 20121230 -9606 137682 NDUFAF6 - C8orf38 HGNC:28625|MIM:612392|Ensembl:ENSG00000156170|HPRD:17553|Vega:OTTHUMG00000150173 8 8q22.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 protein-coding NDUFAF6 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 O UPF0551 protein C8orf38, mitochondrial|putative phytoene synthase 20121230 -9606 137695 TMEM68 - - HGNC:26510|Ensembl:ENSG00000167904|HPRD:08128|Vega:OTTHUMG00000164293 8 8q12.1 transmembrane protein 68 protein-coding TMEM68 transmembrane protein 68 O - 20121230 -9606 137735 ABRA - STARS HGNC:30655|MIM:609747|Ensembl:ENSG00000174429|HPRD:11608|Vega:OTTHUMG00000164809 8 8q23.1 actin-binding Rho activating protein protein-coding ABRA actin-binding Rho activating protein O actin-binding Rho-activating protein|striated muscle activator of Rho-dependent signaling 20121230 -9606 137797 LYPD2 UNQ430/PRO788 LYPDC2|UNQ430 HGNC:25215|Ensembl:ENSG00000197353|HPRD:14334|Vega:OTTHUMG00000164686 8 8q24.3 LY6/PLAUR domain containing 2 protein-coding LYPD2 LY6/PLAUR domain containing 2 O RGTR430|ly6/PLAUR domain-containing protein 2 20121230 -9606 137814 NKX2-6 - CSX2|NKX2F|NKX4-2 HGNC:32940|MIM:611770|Ensembl:ENSG00000180053|Vega:OTTHUMG00000163867 8 8p21.2 NK2 homeobox 6 protein-coding NKX2-6 NK2 homeobox 6 O NK2 transcription factor related, locus 6|homeobox protein NK2 homolog F|homeobox protein NKX2.6|homeobox protein Nkx-2.6|tinman paralog 20121230 -9606 137835 TMEM71 - - HGNC:26572|Ensembl:ENSG00000165071|HPRD:08154|Vega:OTTHUMG00000164647 8 8q24.22 transmembrane protein 71 protein-coding TMEM71 transmembrane protein 71 O - 20121230 -9606 137868 SGCZ - ZSG1 HGNC:14075|MIM:608113|Ensembl:ENSG00000185053|HPRD:12165|Vega:OTTHUMG00000090827 8 8p22 sarcoglycan, zeta protein-coding SGCZ sarcoglycan, zeta O zeta-SG|zeta-sarcoglycan 20121230 -9606 137872 ADHFE1 HMFT2263 ADH8|HOT HGNC:16354|MIM:611083|Ensembl:ENSG00000147576|HPRD:12428|Vega:OTTHUMG00000150215 8 8q13.1 alcohol dehydrogenase, iron containing, 1 protein-coding ADHFE1 alcohol dehydrogenase, iron containing, 1 O Fe-containing alcohol dehydrogenase 1|alcohol dehydrogenase 8|alcohol dehydrogenase iron-containing protein 1|hydroxyacid-oxoacid transhydrogenase, mitochondrial 20121230 -9606 137886 UBXN2B - p37 HGNC:27035|MIM:610686|Ensembl:ENSG00000215114|Vega:OTTHUMG00000164300 8 8q12.1 UBX domain protein 2B protein-coding UBXN2B UBX domain protein 2B O NSFL1 cofactor p37|UBX domain-containing protein 2B|p97 cofactor p37 20121230 -9606 137902 PXDNL - PRM1|VPO2 HGNC:26359|Ensembl:ENSG00000147485|HPRD:08693|Vega:OTTHUMG00000164244 8 8q11.22-q11.23 peroxidasin homolog (Drosophila)-like protein-coding PXDNL peroxidasin homolog (Drosophila)-like O cardiac peroxidase|cardiovascular peroxidase 2|peroxidasin homolog-like|peroxidasin-like protein|polysomal ribonuclease 1|vascular peroxidase 2 20121230 -9606 137964 AGPAT6 UNQ551/PRO1108 1-AGPAT 6|LPAAT-zeta|LPAATZ|TSARG7 HGNC:20880|MIM:608143|Ensembl:ENSG00000158669|HPRD:12175|Vega:OTTHUMG00000164082 8 8p11.21 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) protein-coding AGPAT6 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) O 1-AGP acyltransferase 6|1-acyl-sn-glycerol-3-phosphate acyltransferase zeta|glycerol-3-phosphate acyltransferase 6|lysophosphatidic acid acyltransferase zeta|testis spermatogenesis apoptosis-related protein 7 20121230 -9606 137970 UNC5D UNQ6012/PRO34692 PRO34692|Unc5h4 HGNC:18634|Ensembl:ENSG00000156687|HPRD:11661|Vega:OTTHUMG00000157145 8 8p12 unc-5 homolog D (C. elegans) protein-coding UNC5D unc-5 homolog D (C. elegans) O netrin receptor UNC5D|netrin receptor Unc5h4|protein unc-5 homolog 4|protein unc-5 homolog D|unc-5 homolog 4 20121230 -9606 137994 LETM2 - - HGNC:14648|Ensembl:ENSG00000165046|HPRD:08060|Vega:OTTHUMG00000165059 8 8p11.23 leucine zipper-EF-hand containing transmembrane protein 2 protein-coding LETM2 leucine zipper-EF-hand containing transmembrane protein 2 O LETM1 and EF-hand domain-containing protein 2|LETM1 domain-containing protein LETM2, mitochondrial|leucine zipper-EF-hand containing transmembrane protein 1-like protein 20121230 -9606 138009 DCAF4L2 - WDR21C HGNC:26657|Ensembl:ENSG00000176566|HPRD:08187|Vega:OTTHUMG00000163767 8 8q21.3 DDB1 and CUL4 associated factor 4-like 2 protein-coding DCAF4L2 DDB1 and CUL4 associated factor 4-like 2 O DDB1- and CUL4-associated factor 4-like protein 2|WD repeat domain 21C|WD repeat-containing protein 21C 20121230 -9606 138046 RALYL - HNRPCL3 HGNC:27036|MIM:614648|Ensembl:ENSG00000184672|HPRD:11236|Vega:OTTHUMG00000164628 8 8q21.2 RALY RNA binding protein-like protein-coding RALYL RALY RNA binding protein-like O RNA-binding Raly-like protein|hRALYL|heterogeneous nuclear ribonucleoprotein C-like 3|hnRNP core protein C-like 3 20121230 -9606 138050 HGSNAT - HGNAT|MPS3C|TMEM76 HGNC:26527|MIM:610453|Ensembl:ENSG00000165102|Vega:OTTHUMG00000164102 8 8p11.1 heparan-alpha-glucosaminide N-acetyltransferase protein-coding HGSNAT heparan-alpha-glucosaminide N-acetyltransferase O transmembrane protein 76 20121230 -9606 138065 RNF183 - - HGNC:28721|Ensembl:ENSG00000165188|HPRD:10082|Vega:OTTHUMG00000020520 9 9q32 ring finger protein 183 protein-coding RNF183 ring finger protein 183 O RING finger protein 183 20121230 -9606 138151 NACC2 - BEND9|BTBD14|BTBD14A HGNC:23846|Ensembl:ENSG00000148411|HPRD:09831|Vega:OTTHUMG00000020921 9 9q34.3 NACC family member 2, BEN and BTB (POZ) domain containing protein-coding NACC2 NACC family member 2, BEN and BTB (POZ) domain containing O BEN domain containing 9|BTB (POZ) domain containing 14A|BTB/POZ domain-containing protein 14A|NAC-2|nucleus accumbens-associated protein 2 20121230 -9606 138159 LOC138159 - - - 9 9q34.3 progestagen-associated endometrial protein pseudogene pseudo - - - - 20121230 -9606 138162 C9orf116 RP11-426A6.4 PIERCE1|RbEST47 HGNC:28435|MIM:614502|Ensembl:ENSG00000160345|HPRD:12937|Vega:OTTHUMG00000020902 9 9q34.3 chromosome 9 open reading frame 116 protein-coding C9orf116 chromosome 9 open reading frame 116 O UPF0691 protein C9orf116|p53-induced expression 1 in Rb−/− cells|p53-induced expression in RB-null cells protein 1|pierce 1 20121230 -9606 138199 C9orf41 RP11-197P3.7 - HGNC:23435|Ensembl:ENSG00000156017|HPRD:12958|Vega:OTTHUMG00000020032 9 9q21.13 chromosome 9 open reading frame 41 protein-coding C9orf41 chromosome 9 open reading frame 41 O UPF0586 protein C9orf41 20121230 -9606 138234 LOC138234 - - - 9 9p24.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d pseudogene pseudo - - - - 20121230 -9606 138240 C9orf57 - RP11-346E17.3 HGNC:27037|Ensembl:ENSG00000204669|Vega:OTTHUMG00000020003 9 9q21.13 chromosome 9 open reading frame 57 protein-coding C9orf57 chromosome 9 open reading frame 57 O uncharacterized protein C9orf57 20121230 -9606 138241 C9orf85 RP11-346E17.2 - HGNC:28784|Ensembl:ENSG00000155621|HPRD:12983|Vega:OTTHUMG00000020002 9 9q21.13 chromosome 9 open reading frame 85 protein-coding C9orf85 chromosome 9 open reading frame 85 O uncharacterized protein C9orf85 20121230 -9606 138255 C9orf135 - - HGNC:31422|Ensembl:ENSG00000204711|HPRD:17298|Vega:OTTHUMG00000019985 9 9q21.12 chromosome 9 open reading frame 135 protein-coding C9orf135 chromosome 9 open reading frame 135 O uncharacterized protein C9orf135 20121230 -9606 138307 LCN8 - EP17|LCN5 HGNC:27038|MIM:612902|Ensembl:ENSG00000204001|HPRD:18549|Vega:OTTHUMG00000020942 9 9q34.3 lipocalin 8 protein-coding LCN8 lipocalin 8 O epididymal-specific lipocalin-8|lipocalin 5 20121230 -9606 138311 FAM69B PP6977 C9orf136|pp6977 HGNC:28290|MIM:614543|Ensembl:ENSG00000165716|HPRD:14468|Vega:OTTHUMG00000020940 9 9q34.3 family with sequence similarity 69, member B protein-coding FAM69B family with sequence similarity 69, member B O protein FAM69B 20121230 -9606 138412 SLC25A6P2 - - HGNC:43850 9 9p21.1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 2 pseudo SLC25A6P2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 2 O - 20121230 -9606 138428 PTRH1 - C9orf115|PTH1 HGNC:27039|Ensembl:ENSG00000187024|HPRD:12936|Vega:OTTHUMG00000020710 9 9q34.11 peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) protein-coding PTRH1 peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) O PTH|probable peptidyl-tRNA hydrolase 20121230 -9606 138429 PIP5KL1 RP11-203J24.5 PIPKH|bA203J24.5 HGNC:28711|MIM:612865|Ensembl:ENSG00000167103|HPRD:15139|Vega:OTTHUMG00000020719 9 9q34.11 phosphatidylinositol-4-phosphate 5-kinase-like 1 protein-coding PIP5KL1 phosphatidylinositol-4-phosphate 5-kinase-like 1 O PI(4)P 5-kinase-like protein 1|phosphatidylinositol 4-phosphate 5-kinase-like protein 1|phosphatidylinositol phosphate kinase homolog|phosphatidylinositol-4-phosphate 5-kinase-like protein 1|ptdIns(4)P-5-kinase-like protein 1 20121230 -9606 138474 TAF1L - TAF2A2 HGNC:18056|MIM:607798|Ensembl:ENSG00000122728|HPRD:09696|Vega:OTTHUMG00000019747 9 9p21.1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like protein-coding TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like O TAF(II)210|TBP-associated factor 1-like|TBP-associated factor 210 kDa|TBP-associated factor RNA polymerase 1-like|transcription initiation factor TFIID 210 kDa subunit|transcription initiation factor TFIID subunit 1-like 20121230 -9606 138639 PTPDC1 RP11-490F3.2 PTP9Q22 HGNC:30184|Ensembl:ENSG00000158079|HPRD:06689|Vega:OTTHUMG00000020258 9 9q22.32 protein tyrosine phosphatase domain containing 1 protein-coding PTPDC1 protein tyrosine phosphatase domain containing 1 O protein tyrosine phosphatase PTP9Q22|protein tyrosine phosphatase domain-containing protein 1 20121230 -9606 138649 ANKRD19P RP11-526D8.10-001 ANKRD19|bA526D8.2 HGNC:22567|HPRD:16490 9 9q22.31 ankyrin repeat domain 19, pseudogene pseudo ANKRD19P ankyrin repeat domain 19, pseudogene O - 20121230 -9606 138652 PRSS47 - - HGNC:37326 9 9q22.31 protease, serine, 47 unknown PRSS47 protease, serine, 47 O - 20120610 -9606 138715 ARID3C - - HGNC:21209|Ensembl:ENSG00000205143|HPRD:18550|Vega:OTTHUMG00000000445 9 9p13.3 AT rich interactive domain 3C (BRIGHT-like) protein-coding ARID3C AT rich interactive domain 3C (BRIGHT-like) O ARID domain-containing protein 3C|AT-rich interactive domain-containing protein 3C 20121230 -9606 138716 RPP25L - C9orf23|bA296L22.5 HGNC:19909|Ensembl:ENSG00000164967|HPRD:12948|Vega:OTTHUMG00000000443 9 9p13.3 ribonuclease P/MRP 25kDa subunit-like protein-coding RPP25L ribonuclease P/MRP 25kDa subunit-like O RNase P protein subunit-like p25|alba-like protein C9orf23|ribonuclease P protein subunit p25-like protein|rpp25-like protein 20121230 -9606 138724 C9orf131 - - HGNC:31418|Ensembl:ENSG00000174038|HPRD:14616|Vega:OTTHUMG00000019853 9 9p13.3 chromosome 9 open reading frame 131 protein-coding C9orf131 chromosome 9 open reading frame 131 O uncharacterized protein C9orf131 20121230 -9606 138799 OR13C5 - OR9-11 HGNC:15100|Ensembl:ENSG00000255800|HPRD:14907|Vega:OTTHUMG00000020408 9 9q31.1 olfactory receptor, family 13, subfamily C, member 5 protein-coding OR13C5 olfactory receptor, family 13, subfamily C, member 5 O olfactory receptor 13C5|olfactory receptor OR9-11 20121230 -9606 138802 OR13C8 - OR37H|OR9-10 HGNC:15103|Ensembl:ENSG00000186943|HPRD:14908|Vega:OTTHUMG00000020409 9 9q31.1 olfactory receptor, family 13, subfamily C, member 8 protein-coding OR13C8 olfactory receptor, family 13, subfamily C, member 8 O olfactory receptor 13C8|olfactory receptor OR9-10 pseudogene 20121230 -9606 138803 OR13C3 - OR37G|OR9-8 HGNC:14704|Ensembl:ENSG00000204246|HPRD:14906|Vega:OTTHUMG00000020406 9 9q31.1 olfactory receptor, family 13, subfamily C, member 3 protein-coding OR13C3 olfactory receptor, family 13, subfamily C, member 3 O olfactory receptor 13C3|olfactory receptor OR9-8 20121230 -9606 138804 OR13C4 - HSHTPCRX17|HTPCRX17|OR2K1|OR37F|OR9-7 HGNC:14722|Ensembl:ENSG00000148136|HPRD:11411|Vega:OTTHUMG00000020407 9 9q31.1 olfactory receptor, family 13, subfamily C, member 4 protein-coding OR13C4 olfactory receptor, family 13, subfamily C, member 4 O olfactory receptor 13C4|olfactory receptor OR9-7|olfactory receptor, family 2, subfamily K, member 1 20121230 -9606 138805 OR13F1 - OR9-6 HGNC:14723|Ensembl:ENSG00000186881|HPRD:14911|Vega:OTTHUMG00000020404 9 9q31.1 olfactory receptor, family 13, subfamily F, member 1 protein-coding OR13F1 olfactory receptor, family 13, subfamily F, member 1 O olfactory receptor 13F1|olfactory receptor OR9-6 20121230 -9606 138864 LOC138864 - - - 9 9p23 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d pseudogene pseudo - - - - 20121230 -9606 138881 OR1L8 RP11-542K23.8 OR9-24 HGNC:15110|Ensembl:ENSG00000171496|HPRD:14923|Vega:OTTHUMG00000020609 9 9q33.2 olfactory receptor, family 1, subfamily L, member 8 protein-coding OR1L8 olfactory receptor, family 1, subfamily L, member 8 O olfactory receptor 1L8|olfactory receptor OR9-24 20121230 -9606 138882 OR1N2 RP11-542K23.2 OR9-23 HGNC:15111|Ensembl:ENSG00000171501|HPRD:14925|Vega:OTTHUMG00000020607 9 9q33.2 olfactory receptor, family 1, subfamily N, member 2 protein-coding OR1N2 olfactory receptor, family 1, subfamily N, member 2 O olfactory receptor 1N2|olfactory receptor OR9-23 20121230 -9606 138883 OR1N1 RP11-542K23.3 OR1-26|OR1N3|OR9-22 HGNC:8221|Ensembl:ENSG00000171505|HPRD:14924|Vega:OTTHUMG00000020608 9 9q33.2 olfactory receptor, family 1, subfamily N, member 1 protein-coding OR1N1 olfactory receptor, family 1, subfamily N, member 1 O olfactory receptor 1-26|olfactory receptor 1N1|olfactory receptor 1N3|olfactory receptor OR9-22|olfactory receptor, family 1, subfamily N, member 3 20121230 -9606 138916 SYNGR2P2 - - HGNC:33947 9 9q21.2 synaptogyrin 2 pseudogene 2 pseudo SYNGR2P2 synaptogyrin 2 pseudogene 2 O - 20121230 -9606 138948 DBH-AS1 - NCRNA00118 HGNC:24155 9 9q34.2 DBH antisense RNA 1 miscRNA DBH-AS1 DBH antisense RNA 1 O - 20121230 -9606 138971 LOC138971 - - - 9 9q21.13 dipeptidyl-peptidase 3 pseudogene pseudo - - - - 20121230 -9606 139041 PSMAGEA - - - X Xq28 melanoma antigen family A, 4 pseudogene pseudo - - - - 20121230 -9606 139060 LOC139060 - - - X Xp11.3 keratin, type I cytoskeletal 18-like pseudo - - - - 20121230 -9606 139061 LOC139061 - - - X Xp11.3 plasmolipin pseudogene pseudo - - - - 20121230 -9606 139065 SLITRK4 - - HGNC:23502|MIM:300562|Ensembl:ENSG00000179542|HPRD:06486|Vega:OTTHUMG00000022580 X Xq27.3 SLIT and NTRK-like family, member 4 protein-coding SLITRK4 SLIT and NTRK-like family, member 4 O SLIT and NTRK-like protein 4|slit and trk like gene 4 20121230 -9606 139067 SPANXN3 - CT11.8|SPANX-N3 HGNC:33176|MIM:300666|Ensembl:ENSG00000189252|HPRD:18092|Vega:OTTHUMG00000022582 X Xq27.3 SPANX family, member N3 protein-coding SPANXN3 SPANX family, member N3 O cancer/testis antigen family 11, member 8|nuclear-associated protein SPAN-Xn3|sperm protein associated with the nucleus on the X chromosome N3 20121230 -9606 139081 MAGEC3 RP6-232G24.3 CT7.2|HCA2|MAGE-C3|MAGEC4 HGNC:23798|MIM:300469|Ensembl:ENSG00000165509|HPRD:06629|Vega:OTTHUMG00000022570 X Xq27.2 melanoma antigen family C, 3 protein-coding MAGEC3 melanoma antigen family C, 3 O MAGE family testis and tumor-specific protein|MAGE-C3 antigen|cancer/testis antigen 7.2|cancer/testis antigen family 7, member 2|hepatocellular carcinoma-associated antigen 2|hepatocellular carcinoma-associated protein HCA2|melanoma-associated antigen C3 20121230 -9606 139105 BEND2 RP5-1129A6.2 CXorf20 HGNC:28509|Ensembl:ENSG00000177324|HPRD:06646|Vega:OTTHUMG00000021211 X Xp22.13 BEN domain containing 2 protein-coding BEND2 BEN domain containing 2 O BEN domain-containing protein 2 20121230 -9606 139135 PASD1 - CT63|OXTES1 HGNC:20686|Ensembl:ENSG00000166049|HPRD:06613|Vega:OTTHUMG00000024169 X Xq28 PAS domain containing 1 protein-coding PASD1 PAS domain containing 1 O PAS domain-containing protein 1|cancer/testis antigen 63 20121230 -9606 139163 SALL1P1 - SALL1P HGNC:10525 X Xp11.23 sal-like 1 (Drosophila) pseudogene 1 pseudo SALL1P1 sal-like 1 (Drosophila) pseudogene 1 O - 20121230 -9606 139170 DCAF12L1 - KIAA1892L|WDR40B HGNC:29395|Ensembl:ENSG00000198889|HPRD:06604|Vega:OTTHUMG00000022353 X Xq25 DDB1 and CUL4 associated factor 12-like 1 protein-coding DCAF12L1 DDB1 and CUL4 associated factor 12-like 1 O DDB1- and CUL4-associated factor 12-like protein 1|WD repeat domain 40B|WD repeat-containing protein 40B 20121230 -9606 139189 DGKK - - HGNC:32395|MIM:300837|HPRD:10299 X Xp11.22 diacylglycerol kinase, kappa protein-coding DGKK diacylglycerol kinase, kappa O 142 kDa diacylglycerol kinase|DAG kinase kappa|DGK-kappa|diacylglycerol kinase kappa|diglyceride kinase kappa 20121230 -9606 139201 MAP2K4P1 - - HGNC:43837 X Xq13.2 mitogen-activated protein kinase kinase 4 pseudogene 1 pseudo MAP2K4P1 mitogen-activated protein kinase kinase 4 pseudogene 1 O - 20121230 -9606 139212 PIH1D3 - CXorf41|NYSAR97 HGNC:28570|Ensembl:ENSG00000080572|HPRD:06650|Vega:OTTHUMG00000022160 X Xq22.3 PIH1 domain containing 3 protein-coding PIH1D3 PIH1 domain containing 3 O PIH1 domain-containing protein 3|protein PIH1D3|sarcoma antigen NY-SAR-97 20121230 -9606 139221 MUM1L1 LL0XNC01-50F11.1 - HGNC:26583|Ensembl:ENSG00000157502|HPRD:06555|Vega:OTTHUMG00000022146 X Xq22.3 melanoma associated antigen (mutated) 1-like 1 protein-coding MUM1L1 melanoma associated antigen (mutated) 1-like 1 O MUM1-like protein 1|PWWP domain-containing protein MUM1L1|mutated melanoma-associated antigen 1-like protein 1 20121230 -9606 139231 FAM199X RP1-233G16.2 CXorf39 HGNC:25195|Ensembl:ENSG00000123575|HPRD:10045|Vega:OTTHUMG00000022126 X Xq22.2 family with sequence similarity 199, X-linked protein-coding FAM199X family with sequence similarity 199, X-linked O protein FAM199X 20121230 -9606 139249 FAM47DP - - HGNC:34342 X Xp21.1 family with sequence similarity 47, member D (pseudogene) pseudo FAM47DP family with sequence similarity 47, member D, pseudogene O - 20121230 -9606 139285 AMER1 RP11-403E24.2 FAM123B|OSCS|WTX HGNC:26837|MIM:300647|Ensembl:ENSG00000184675|HPRD:06565|Vega:OTTHUMG00000021703 X Xq11.2 APC membrane recruitment protein 1 protein-coding AMER1 APC membrane recruitment protein 1 O Wilms tumor gene on the X chromosome protein|Wilms tumor on the X|adenomatous polyposis coli membrane recruitment 1|family with sequence similarity 123B|protein FAM123B 20121230 -9606 139322 APOOL RP1-215K18.3 CXorf33|FAM121A|UNQ8193 HGNC:24009|Ensembl:ENSG00000155008|HPRD:16775|Vega:OTTHUMG00000021930 X Xq21.1 apolipoprotein O-like protein-coding APOOL apolipoprotein O-like O AAIR8193|family with sequence similarity 121A 20121230 -9606 139324 HDX RP6-162O13.1 CXorf43|D030011N01Rik HGNC:26411|Ensembl:ENSG00000165259|HPRD:06550|Vega:OTTHUMG00000021926 X Xq21.1 highly divergent homeobox protein-coding HDX highly divergent homeobox O - 20121230 -9606 139334 IMPDH1P4 - - HGNC:33959 X Xp11.3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 4 pseudo IMPDH1P4 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 4 O - 20121230 -9606 139341 FUNDC1 RP4-551E13.3 - HGNC:28746|MIM:300871|Ensembl:ENSG00000069509|HPRD:06658|Vega:OTTHUMG00000021399 X Xp11.3 FUN14 domain containing 1 protein-coding FUNDC1 FUN14 domain containing 1 O FUN14 domain-containing protein 1 20121230 -9606 139363 MAGEA13P LL0XNC01-244G10.1 - HGNC:35154 X Xq26.3 melanoma antigen family A, 13 pseudogene pseudo MAGEA13P melanoma antigen family A, 13 pseudogene O - 20121230 -9606 139378 GPR112 RP11-51D15.1 PGR17|RP1-299I16 HGNC:18992|Ensembl:ENSG00000156920|HPRD:06578|Vega:OTTHUMG00000022508 X Xq26.3 G protein-coupled receptor 112 protein-coding GPR112 G protein-coupled receptor 112 O probable G-protein coupled receptor 112 20121230 -9606 139411 PTCHD1 - - HGNC:26392|MIM:300828|Ensembl:ENSG00000165186|HPRD:06548|Vega:OTTHUMG00000021251 X Xp22.11 patched domain containing 1 protein-coding PTCHD1 patched domain containing 1 O patched domain-containing protein 1 20121230 -9606 139420 SMEK3P - FLFL3P|smk1 HGNC:33146|HPRD:09960 X Xp21.3 SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene pseudo SMEK3P SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene O - 20121230 -9606 139422 MAGEB10 - - HGNC:25377|MIM:300761|Ensembl:ENSG00000177689|HPRD:06554|Vega:OTTHUMG00000046084 X Xp21.3 melanoma antigen family B, 10 protein-coding MAGEB10 melanoma antigen family B, 10 O MAGE family testis and tumor-specific protein|MAGE-B10 antigen|melanoma-associated antigen B10 20121230 -9606 139425 DCAF8L1 - WDR42B HGNC:31810|Ensembl:ENSG00000226372|HPRD:18551|Vega:OTTHUMG00000021312 X Xp21.3 DDB1 and CUL4 associated factor 8-like 1 protein-coding DCAF8L1 DDB1 and CUL4 associated factor 8-like 1 O DDB1- and CUL4-associated factor 8-like protein 1|WD repeat domain 42B|WD repeat-containing protein 42B 20121230 -9606 139431 FTH1P14 - - HGNC:39090 X Xp21.1 ferritin, heavy polypeptide 1 pseudogene 14 pseudo FTH1P14 ferritin, heavy polypeptide 1 pseudogene 14 O - 20121230 -9606 139452 RPL6P30 - RPL6_11_1767 HGNC:36171 X Xp22.2 ribosomal protein L6 pseudogene 30 pseudo RPL6P30 ribosomal protein L6 pseudogene 30 O - 20121230 -9606 139516 AKAP16BP - AKAP16B HGNC:38514 X Xq24 A kinase (PRKA) anchor protein 16B, pseudogene pseudo AKAP16BP A kinase (PRKA) anchor protein 16B, pseudogene O - 20121230 -9606 139538 VENTXP1 - CT18|NA88A|VENTX2P1 HGNC:30900 X Xp21.3 VENT homeobox pseudogene 1 pseudo VENTXP1 VENT homeobox pseudogene 1 O - 20121230 -9606 139542 LOC139542 hCG_1660138 - - X Xq26.3 E2F transcription factor 6 pseudogene pseudo - - - - 20121230 -9606 139562 OTUD6A - DUBA2|HSHIN6 HGNC:32312|MIM:300714|Ensembl:ENSG00000189401|HPRD:13681|Vega:OTTHUMG00000159996 X Xq13.1 OTU domain containing 6A protein-coding OTUD6A OTU domain containing 6A O DUBA-2|HIN-6 protease|OTU domain-containing protein 6A 20121230 -9606 139596 UPRT RP11-311P8.3 FUR1|UPP HGNC:28334|MIM:300656|Ensembl:ENSG00000094841|HPRD:06640|Vega:OTTHUMG00000021864 X Xq13.3 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) protein-coding UPRT uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) O UMP pyrophosphorylase|UPRTase|uracil phosphoribosyltransferase homolog 20121230 -9606 139599 MAGEE2 - HCA3 HGNC:24935|MIM:300760|Ensembl:ENSG00000186675|HPRD:06585|Vega:OTTHUMG00000021870 X Xq13.3 melanoma antigen family E, 2 protein-coding MAGEE2 melanoma antigen family E, 2 O MAGE-E2 antigen|hepatocellular carcinoma-associated protein 3|hepatocellular carcinoma-associated protein HCA3|melanoma-associated antigen E2 20121230 -9606 139604 MAGEB16 RP11-497J7.3 - HGNC:21188|MIM:300762|Ensembl:ENSG00000189023|Vega:OTTHUMG00000021348 X Xp21.1 melanoma antigen family B, 16 protein-coding MAGEB16 melanoma antigen family B, 16 O MAGE-B16 antigen|melanoma antigen family B, 16 (pseudogene)|melanoma-associated antigen B16 20121230 -9606 139628 FOXR2 - FOXN6 HGNC:30469|Ensembl:ENSG00000189299|HPRD:13552|Vega:OTTHUMG00000021661 X Xp11.21 forkhead box R2 protein-coding FOXR2 forkhead box R2 O forkhead box protein N6|forkhead box protein R2 20121230 -9606 139629 XAGE-4 RP11-167P23.2 - - X Xp11.21 XAGE-4 protein unknown - - - - 20121230 -9606 139716 GAB3 - - HGNC:17515|MIM:300482|Ensembl:ENSG00000160219|HPRD:06571|Vega:OTTHUMG00000024245 X Xq28 GRB2-associated binding protein 3 protein-coding GAB3 GRB2-associated binding protein 3 O DOS/Gab family member 3|GRB2-associated binder 3|GRB2-associated-binding protein 3|Gab3 scaffolding protein|growth factor receptor bound protein 2-associated protein 3 20121230 -9606 139728 PNCK - BSTK3|CaMK1b HGNC:13415|MIM:300680|Ensembl:ENSG00000130822|Vega:OTTHUMG00000024216 X Xq28 pregnancy up-regulated non-ubiquitously expressed CaM kinase protein-coding PNCK pregnancy up-regulated non-ubiquitously expressed CaM kinase O caM kinase I beta|caM kinase IB|caM-KI beta|caMKI-beta|calcium/calmodulin-dependent protein kinase type 1B|pregnancy up-regulated non-ubiquitously-expressed CaM kinase|pregnancy upregulated non-ubiquitously expressed CaM kinase 20121230 -9606 139735 ZFP92 - ZNF897 HGNC:12865|Ensembl:ENSG00000189420|Vega:OTTHUMG00000024198 X Xq28 ZFP92 zinc finger protein protein-coding ZFP92 ZFP92 zinc finger protein O zfp-92|zinc finger protein 92 homolog|zinc finger protein homologous to Zfp92 in mouse 20121230 -9606 139741 ACTRT1 RP1-203C2.1 AIP1|ARIP1|ARPT1|HSD27 HGNC:24027|MIM:300487|Ensembl:ENSG00000123165|HPRD:06439|Vega:OTTHUMG00000022359 X Xq25 actin-related protein T1 protein-coding ACTRT1 actin-related protein T1 O - 20121230 -9606 139748 KRT18P44 RP5-1032F13.1 - HGNC:33414 X Xq25 keratin 18 pseudogene 44 pseudo KRT18P44 keratin 18 pseudogene 44 O - 20121230 -9606 139760 GPR119 RP1-20I3.4 GPCR2 HGNC:19060|MIM:300513|Ensembl:ENSG00000147262|HPRD:06579|Vega:OTTHUMG00000022397 X Xq26.1 G protein-coupled receptor 119 protein-coding GPR119 G protein-coupled receptor 119 O G-protein coupled receptor 2|glucose-dependent insulinotropic receptor 20121230 -9606 139793 PAGE3 RP11-382F24.5 CT16.6|GAGED1|PAGE-3 HGNC:4110|MIM:300739|HPRD:18552 X Xp11.21 P antigen family, member 3 (prostate associated) pseudo PAGE3 P antigen family, member 3 (prostate associated) O - 20121230 -9606 139804 RBMXL3 - CXorf55 HGNC:26859|Ensembl:ENSG00000175718|HPRD:06567|Vega:OTTHUMG00000022230 X Xq23 RNA binding motif protein, X-linked-like 3 protein-coding RBMXL3 RNA binding motif protein, X-linked-like 3 O RNA-binding motif protein, X-linked-like-3 20121230 -9606 139818 DOCK11 RP13-128O4.1 ACG|ZIZ2|bB128O4.1 HGNC:23483|MIM:300681|Ensembl:ENSG00000147251|HPRD:06492|Vega:OTTHUMG00000022256 X Xq24 dedicator of cytokinesis 11 protein-coding DOCK11 dedicator of cytokinesis 11 O Activated Cdc42-associated guanine nucleotide exchange factor, ACG|bB128O4.1.1 (novel protein)|dedicator of cytokinesis protein 11|zizimin-2|zizimin2 20121230 -9606 139886 SPIN4 RP11-93B10.1 - HGNC:27040|Ensembl:ENSG00000186767|HPRD:12556|Vega:OTTHUMG00000021696 X Xq11.1 spindlin family, member 4 protein-coding SPIN4 spindlin family, member 4 O spindlin-4 20121230 -9606 139952 LOC139952 - - - X Xp22.2 LIM domain kinase 2 pseudogene pseudo - - - - 20121230 -9606 139957 LOC139957 - - - X Xp21.3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) pseudogene pseudo - - - - 20121230 -9606 140004 TUBB1P2 - - HGNC:23981 Y Yq11.221 tubulin, beta 1 pseudogene 2 pseudo TUBB1P2 tubulin, beta 1 pseudogene 2 O - 20121209 -9606 140028 GAPDHP19 - - HGNC:23947 Y Yq11.222 glyceraldehyde 3 phosphate dehydrogenase pseudogene 19 pseudo GAPDHP19 glyceraldehyde 3 phosphate dehydrogenase pseudogene 19 O - 20121230 -9606 140032 RPS4Y2 - RPS4Y2P HGNC:18501|MIM:400030|Ensembl:ENSG00000157828|HPRD:15960|Vega:OTTHUMG00000036540 Y Yq11.223 ribosomal protein S4, Y-linked 2 protein-coding RPS4Y2 ribosomal protein S4, Y-linked 2 O 40S ribosomal protein S4, Y|40S ribosomal protein S4, Y isoform 2|ribosomal protein S4, Y-linked 2 pseudogene 20121230 -9606 140043 CDY10P - - HGNC:23848 Y Yq11.223 chromodomain protein, Y-linked 10 pseudogene pseudo CDY10P chromodomain protein, Y-linked 10 pseudogene O - 20121209 -9606 140100 RBMY2KP - - HGNC:23888 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member K pseudogene pseudo RBMY2KP RNA binding motif protein, Y-linked, family 2, member K pseudogene O - 20121230 -9606 140101 RBMY2MP - - HGNC:23889 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member M pseudogene pseudo RBMY2MP RNA binding motif protein, Y-linked, family 2, member M pseudogene O - 20121230 -9606 140123 RBMY2CP - RBMY2 HGNC:23260 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member C pseudogene pseudo RBMY2CP RNA binding motif protein, Y-linked, family 2, member C pseudogene O - 20121209 -9606 140258 KRTAP13-1 - KAP13.1|KRTAP13.1 HGNC:18924|MIM:608718|Ensembl:ENSG00000198390|HPRD:10570|Vega:OTTHUMG00000057800 21 21q22.1 keratin associated protein 13-1 protein-coding KRTAP13-1 keratin associated protein 13-1 O high sulfur keratin associated protein 13.1|high sulfur keratin-associated protein 13.1|keratin-associated protein 13-1 20121230 -9606 140290 TCP10L PRED77 C21orf77|TCP10A-2 HGNC:11657|MIM:608365|Ensembl:ENSG00000242220|Ensembl:ENSG00000265590|HPRD:10518|Vega:OTTHUMG00000064901|Vega:OTTHUMG00000064928 21 21q22.11 t-complex 10-like protein-coding TCP10L t-complex 10-like O T-complex 10A-2|T-complex protein 10A homolog 2|T-complex protein 10A-2|TCP10-like|t-complex 10 (a murine tcp homolog)-like 20121230 -9606 140432 RNF113B - RNF161|ZNF183L1|bA10G5.1 HGNC:17267|Ensembl:ENSG00000139797|HPRD:15745|Vega:OTTHUMG00000017245 13 13q32.2 ring finger protein 113B protein-coding RNF113B ring finger protein 113B O RING finger protein 113B|zinc finger protein 183-like 1 20121230 -9606 140451 SCA9 - - HGNC:13440|MIM:612876 - - spinocerebellar ataxia 9 unknown SCA9 spinocerebellar ataxia 9 O - 20110215 -9606 140452 SCA19 - - HGNC:17033|MIM:607346 1 1p21-q21 spinocerebellar ataxia 19 unknown SCA19 spinocerebellar ataxia 19 O - 20120622 -9606 140453 MUC17 - MUC3 HGNC:16800|MIM:608424|Ensembl:ENSG00000169876|HPRD:16335|Vega:OTTHUMG00000157030 7 7q22.1 mucin 17, cell surface associated protein-coding MUC17 mucin 17, cell surface associated O MUC-17|MUC-3|membrane mucin MUC17|mucin-17|secreted mucin MUC17|small intestinal mucin MUC3|small intestinal mucin-3 20121230 -9606 140454 PSORS8 - - HGNC:17322|MIM:610707 16 16q psoriasis susceptibility 8 unknown PSORS8 psoriasis susceptibility 8 O - 20120622 -9606 140456 ASB11 - - HGNC:17186|MIM:300626|Ensembl:ENSG00000165192|HPRD:06450|Vega:OTTHUMG00000021173 X Xp22.31 ankyrin repeat and SOCS box containing 11 protein-coding ASB11 ankyrin repeat and SOCS box containing 11 O ASB-11|ankyrin repeat and SOCS box protein 11|ankyrin repeat domain-containing SOCS box protein ASB11 20121230 -9606 140458 ASB5 - ASB-5 HGNC:17180|Ensembl:ENSG00000164122|HPRD:10672|Vega:OTTHUMG00000160793 4 4q34.2 ankyrin repeat and SOCS box containing 5 protein-coding ASB5 ankyrin repeat and SOCS box containing 5 O SOCS box protein ASB-5|ankyrin repeat and SOCS box protein 5|ankyrin repeat and SOCS box-containing 5 20121230 -9606 140459 ASB6 RP11-483H20.7 - HGNC:17181|Ensembl:ENSG00000148331|HPRD:10673|Vega:OTTHUMG00000020787 9 - ankyrin repeat and SOCS box containing 6 protein-coding ASB6 ankyrin repeat and SOCS box containing 6 O ankyrin repeat and SOCS box protein 6|ankyrin repeat and SOCS box-containing 6 20121230 -9606 140460 ASB7 - - HGNC:17182|Ensembl:ENSG00000183475|HPRD:10674|Vega:OTTHUMG00000149868 15 - ankyrin repeat and SOCS box containing 7 protein-coding ASB7 ankyrin repeat and SOCS box containing 7 O ASB-7|ankyrin repeat and SOCS box protein 7|ankyrin repeat and SOCS box-containing 7 20121230 -9606 140461 ASB8 PP14212 - HGNC:17183|Ensembl:ENSG00000177981|HPRD:10675|Vega:OTTHUMG00000167834 12 12q13.11 ankyrin repeat and SOCS box containing 8 protein-coding ASB8 ankyrin repeat and SOCS box containing 8 O ASB-8|ankyrin repeat and SOCS box protein 8|ankyrin repeat and SOCS box-containing 8 20121230 -9606 140462 ASB9 - - HGNC:17184|Ensembl:ENSG00000102048|HPRD:06452|Vega:OTTHUMG00000021172 X - ankyrin repeat and SOCS box containing 9 protein-coding ASB9 ankyrin repeat and SOCS box containing 9 O ASB-9|ankyrin repeat and SOCS box protein 9|ankyrin repeat and SOCS box-containing 9|ankyrin repeat and suppressor of cytokine signaling box protein 9 20121230 -9606 140464 PISRT1 - NCRNA00195 HGNC:16671 3 3q23 polled intersex syndrome regulated transcript 1 (non-protein coding RNA) miscRNA PISRT1 polled intersex syndrome regulated transcript 1 (non-protein coding RNA) O - 20121230 -9606 140465 MYL6B - MLC1SA HGNC:29823|MIM:609930|Ensembl:ENSG00000196465|HPRD:14721|Vega:OTTHUMG00000170199 12 12q13.13 myosin, light chain 6B, alkali, smooth muscle and non-muscle protein-coding MYL6B myosin, light chain 6B, alkali, smooth muscle and non-muscle O myosin alkali light chain 1 slow a|myosin light chain 1 slow a|myosin light chain 1 slow-twitch muscle A isoform|myosin light chain 1, slow-twitch muscle A isoform|myosin light chain 6B|myosin, light polypeptide 6B, alkali, smooth muscle and non-muscle|smooth muscle and non-muscle myosin alkali light chain 6B|smooth muscle and nonmuscle myosin light chain alkali 6B 20121230 -9606 140467 ZNF358 - ZFEND HGNC:16838|HPRD:10331 19 19p13.2 zinc finger protein 358 protein-coding ZNF358 zinc finger protein 358 O - 20121230 -9606 140468 COX11P1 - COX11|COX11P HGNC:2262 6 6p23-p22 COX11 cytochrome c oxidase assembly homolog (yeast) pseudogene 1 pseudo COX11P1 COX11 cytochrome c oxidase assembly homolog (yeast) pseudogene 1 O - 20121230 -9606 140469 MYO3B - - HGNC:15576|MIM:610040|Ensembl:ENSG00000071909|HPRD:17623|Vega:OTTHUMG00000154002 2 2q31.1-q31.2 myosin IIIB protein-coding MYO3B myosin IIIB O myosin-IIIb 20121230 -9606 140545 RNF32 tcag7.575 FKSG33|HSD15 HGNC:17118|MIM:610241|Ensembl:ENSG00000105982|HPRD:11517|Vega:OTTHUMG00000151440 7 7q36 ring finger protein 32 protein-coding RNF32 ring finger protein 32 O RING finger protein 32 20121230 -9606 140560 LI5 - - MIM:606545 17 17p13.2-p13.1 Lamellar ichthyosis 5 unknown - - - - 20120622 -9606 140564 APOBEC3D - APOBEC3DE|APOBEC3E|ARP6 HGNC:17354|MIM:609900|Ensembl:ENSG00000243811|HPRD:16501|Vega:OTTHUMG00000151084 22 22q13.1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D protein-coding APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D O DNA dC->dU-editing enzyme APOBEC-3D|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3E pseudogene|probable DNA dC->dU-editing enzyme APOBEC-3D 20121230 -9606 140575 SCA22 - - HGNC:17320 1 1p21-q23 spinocerebellar ataxia 22 unknown SCA22 spinocerebellar ataxia 22 O - 20110215 -9606 140576 S100A16 AAG13 DT1P1A7|S100F HGNC:20441|Ensembl:ENSG00000188643|HPRD:11529|Vega:OTTHUMG00000013545 1 1q21 S100 calcium binding protein A16 protein-coding S100A16 S100 calcium binding protein A16 O S100 calcium-binding protein A16|aging-associated gene 13 protein|aging-associated protein 13|protein S100-A16|protein S100-F 20121230 -9606 140578 CHODL PRED12 C21orf68|MT75 HGNC:17807|MIM:607247|Ensembl:ENSG00000154645|HPRD:06261|Vega:OTTHUMG00000074519 21 21q11.2 chondrolectin protein-coding CHODL chondrolectin O transmembrane protein MT75 20121230 -9606 140596 DEFB104A - BD-4|DEFB-4|DEFB104|DEFB4|hBD-4 HGNC:18115|Ensembl:ENSG00000176782|HPRD:10870|Vega:OTTHUMG00000150014 8 8p23.1 defensin, beta 104A protein-coding DEFB104A defensin, beta 104A O beta-defensin 104|defensin, beta 4 20121230 -9606 140597 TCEAL2 My048 MY0876G05|my048 HGNC:29818|Ensembl:ENSG00000184905|HPRD:06761|Vega:OTTHUMG00000022048 X Xq22.1-q22.3 transcription elongation factor A (SII)-like 2 protein-coding TCEAL2 transcription elongation factor A (SII)-like 2 O TCEA-like protein 2|transcription elongation factor A protein-like 2|transcription elongation factor S-II protein-like 2 20121230 -9606 140603 COX6B1P1 - COX6BP-1|COX6BP1 HGNC:2281 7 7q36.1 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 1 pseudo COX6B1P1 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 1 O - 20121230 -9606 140606 SELM - SEPM MIM:610918|Ensembl:ENSG00000198832|HPRD:15320|Vega:OTTHUMG00000151207 22 22q12.2 selenoprotein M protein-coding - - - selenoprotein SelM 20121230 -9606 140609 NEK7 - - HGNC:13386|MIM:606848|Ensembl:ENSG00000151414|HPRD:06027|Vega:OTTHUMG00000035658 1 1q31.3 NIMA-related kinase 7 protein-coding NEK7 NIMA-related kinase 7 O NIMA (never in mitosis gene a)-related kinase 7|never in mitosis A-related kinase 7|nimA-related protein kinase 7|serine/threonine-protein kinase Nek7 20121230 -9606 140612 ZFP28 - mkr5 HGNC:17801|Ensembl:ENSG00000196867|HPRD:15725|Vega:OTTHUMG00000181944 19 - ZFP28 zinc finger protein protein-coding ZFP28 ZFP28 zinc finger protein O krueppel-like zinc finger factor X6|zfp-28|zinc finger factor X6|zinc finger protein 28 homolog 20121230 -9606 140623 FAUP1 - FAU1P|RPS30_2_1613 HGNC:17984 18 18q22.3 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 1 pseudo FAUP1 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 1 O - 20121230 -9606 140625 ACTRT2 - ARPM2|ARPT2|Arp-T2|HARPM2 HGNC:24026|MIM:608535|Ensembl:ENSG00000169717|HPRD:12254|Vega:OTTHUMG00000000562 1 1p36.32 actin-related protein T2 protein-coding ACTRT2 actin-related protein T2 O actin-related protein M2|actin-related protein hArpM2 20121230 -9606 140628 GATA5 - bB379O24.1 HGNC:15802|MIM:611496|Ensembl:ENSG00000130700|HPRD:17029|Vega:OTTHUMG00000032919 20 20q13.33 GATA binding protein 5 protein-coding GATA5 GATA binding protein 5 O GATA binding factor-5|GATA-binding factor 5|GATA-binding protein 5|transcription factor GATA-5 20121230 -9606 140660 RPL21P4 - RPL21_58_1548 HGNC:17959 17 17q21 ribosomal protein L21 pseudogene 4 pseudo RPL21P4 ribosomal protein L21 pseudogene 4 O - 20121230 -9606 140678 MLLT10P1 - MLLT10L|bA348I14.3 HGNC:15794 20 - myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1 pseudo MLLT10P1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1 O - 20121230 -9606 140679 SLC32A1 - VGAT|VIAAT HGNC:11018|Ensembl:ENSG00000101438|HPRD:18058|Vega:OTTHUMG00000032457 20 20q11.23 solute carrier family 32 (GABA vesicular transporter), member 1 protein-coding SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 O GABA and glycine transporter|hVIAAT|solute carrier family 32 member 1|vesicular GABA transporter|vesicular inhibitory amino acid transporter 20121230 -9606 140680 C20orf96 RP5-1103G7.6 dJ1103G7.2 HGNC:16227|Ensembl:ENSG00000196476|HPRD:12790|Vega:OTTHUMG00000031626 20 20p13 chromosome 20 open reading frame 96 protein-coding C20orf96 chromosome 20 open reading frame 96 O uncharacterized protein C20orf96 20121230 -9606 140683 BPIFA2 UNQ510/PRO1025 C20orf70|PSP|SPLUNC2|bA49G10.1 HGNC:16203|Ensembl:ENSG00000131050|HPRD:12781|Vega:OTTHUMG00000032244 20 20q11.21 BPI fold containing family A, member 2 protein-coding BPIFA2 BPI fold containing family A, member 2 O BPI fold-containing family A member 2|parotid secretory protein|short palate, lung and nasal epithelium carcinoma associated 2|short palate, lung and nasal epithelium carcinoma-associated protein 2 20121230 -9606 140685 ZBTB46 - BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8 HGNC:16094|MIM:614639|Ensembl:ENSG00000130584|HPRD:16567|Vega:OTTHUMG00000033001 20 20q13.33 zinc finger and BTB domain containing 46 protein-coding ZBTB46 zinc finger and BTB domain containing 46 O BTB (POZ) domain containing 4|BTB-ZF protein expressed in effector lymphocytes|BTB/POZ domain-containing protein 4|zinc finger and BTB domain-containing protein 46|zinc finger protein 340 20121230 -9606 140686 WFDC3 RP3-447F3.3 WAP14|dJ447F3.3 HGNC:15957|Ensembl:ENSG00000124116|HPRD:15676|Vega:OTTHUMG00000032614 20 20q13.12 WAP four-disulfide core domain 3 protein-coding WFDC3 WAP four-disulfide core domain 3 O WAP four-disulfide core domain protein 3|protease inhibitor WAP14|putative protease inhibitor WAP14|whey acidic protein 14 20121230 -9606 140687 GCNT7 RP5-1153D9.2 C20orf105|dJ1153D9.2|gcnt HGNC:16099|Ensembl:ENSG00000124091|Vega:OTTHUMG00000032798 20 20q13.2 glucosaminyl (N-acetyl) transferase family member 7 protein-coding GCNT7 glucosaminyl (N-acetyl) transferase family member 7 O beta 1,6-N-acetylglucosaminyltransferase|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 20121230 -9606 140688 C20orf112 RP5-1184F4.6 C20orf113|dJ1184F4.2|dJ1184F4.4 HGNC:16106|Ensembl:ENSG00000197183|HPRD:10728|Vega:OTTHUMG00000032219 20 20q11.21 chromosome 20 open reading frame 112 protein-coding C20orf112 chromosome 20 open reading frame 112 O uncharacterized protein C20orf112 20121230 -9606 140689 CBLN4 UNQ718/PRO1382 CBLNL1 HGNC:16231|Ensembl:ENSG00000054803|HPRD:16685|Vega:OTTHUMG00000032782 20 20q13 cerebellin 4 precursor protein-coding CBLN4 cerebellin 4 precursor O cerebellin precursor-like 1|cerebellin-4|cerebellin-like glycoprotein 1 20121230 -9606 140690 CTCFL - BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 HGNC:16234|MIM:607022|Ensembl:ENSG00000124092|HPRD:09512|Vega:OTTHUMG00000032829 20 20q13.31 CCCTC-binding factor (zinc finger protein)-like protein-coding CTCFL CCCTC-binding factor (zinc finger protein)-like O BORIS-like protein|CTCF paralog|CTCF-like protein|HMG-1L1|brother of the regulator of imprinted sites|cancer/testis antigen 27|putative high mobility group protein 1-like 1|putative high mobility group protein B1-like 1|transcriptional repressor CTCFL|zinc finger protein CTCF-T 20121230 -9606 140691 TRIM69 hCG_39321 HSD34|RNF36|Trif HGNC:17857|Ensembl:ENSG00000185880|HPRD:11518|Vega:OTTHUMG00000131246 15 15q21.1 tripartite motif containing 69 protein-coding TRIM69 tripartite motif containing 69 O RFP-like domain-containing protein trimless|ring finger protein 36|trimless|tripartite motif protein 69|tripartite motif-containing 69|tripartite motif-containing protein 69 20121230 -9606 140692 COX7BP2 - dJ901O8.2 HGNC:16601 20 20q11.1-q11.23 cytochrome c oxidase subunit VIIb pseudogene 2 pseudo COX7BP2 cytochrome c oxidase subunit VIIb pseudogene 2 O - 20121230 -9606 140695 RPL7P2 - bA550O8.1 HGNC:16336 20 20p13 ribosomal protein L7 pseudogene 2 pseudo RPL7P2 ribosomal protein L7 pseudogene 2 O - 20121230 -9606 140696 RPL37P1 - RPL37_9_1698|bA563A22B.2 HGNC:16337 20 20q11.2 ribosomal protein L37 pseudogene 1 pseudo RPL37P1 ribosomal protein L37 pseudogene 1 O - 20121230 -9606 140697 RPL36P1 - RPL36_9_1713|bA80K6.3 HGNC:16338 20 20q13 ribosomal protein L36 pseudogene 1 pseudo RPL36P1 ribosomal protein L36 pseudogene 1 O - 20121230 -9606 140699 MROH8 RP4-621N11.1 C20orf131|C20orf132|dJ621N11.3|dJ621N11.4 HGNC:16125|Ensembl:ENSG00000101353|HPRD:12745|Vega:OTTHUMG00000032407 20 20q11.22 maestro heat-like repeat family member 8 protein-coding MROH8 maestro heat-like repeat family member 8 O uncharacterized protein C20orf132 20121230 -9606 140700 SAMD10 RP4-591C20.8 C20orf136|dJ591C20|dJ591C20.7 HGNC:16129|Ensembl:ENSG00000130590|HPRD:15292|Vega:OTTHUMG00000033011 20 20q13.33 sterile alpha motif domain containing 10 protein-coding SAMD10 sterile alpha motif domain containing 10 O D930033N23Rik|SAM domain-containing protein 10|sterile alpha motif domain-containing protein 10 20121230 -9606 140701 ABHD16B - C20orf135|dJ591C20.1 HGNC:16128|Ensembl:ENSG00000183260|HPRD:12746|Vega:OTTHUMG00000033010 20 20q13.33 abhydrolase domain containing 16B protein-coding ABHD16B abhydrolase domain containing 16B O abhydrolase domain-containing protein 16B 20121230 -9606 140706 CCM2L RP1-310O13.9 C20orf160|dJ310O13.5 HGNC:16153|Ensembl:ENSG00000101331|HPRD:12753|Vega:OTTHUMG00000032197 20 20q11.2 cerebral cavernous malformation 2-like protein-coding CCM2L cerebral cavernous malformation 2-like O uncharacterized protein C20orf160 20121230 -9606 140707 BRI3BP - BNAS1|HCCR-1|HCCR-2|HCCRBP-1|KG19 HGNC:14251|Ensembl:ENSG00000184992|HPRD:09829|Vega:OTTHUMG00000168548 12 12q24.31 BRI3 binding protein protein-coding BRI3BP BRI3 binding protein O BRI3-binding protein|I3-binding protein|cervical cancer 1 proto-oncogene-binding protein KG19|cervical cancer oncogene binding protein 20121230 -9606 140710 SOGA1 RP3-469A13.2 C20orf117|KIAA0889|SOGA HGNC:16111|Ensembl:ENSG00000149639|HPRD:11116|HPRD:13493|HPRD:18553|Vega:OTTHUMG00000032395 20 20q11.23 suppressor of glucose, autophagy associated 1 protein-coding SOGA1 suppressor of glucose, autophagy associated 1 O SOGA family member 1|protein SOGA1|suppressor of glucose by autophagy|suppressor of glucose from autophagy|suppressor of glucose, autophagy-associated protein 1 20121230 -9606 140711 C20orf118 RP1-132F21.2 dJ132F21.2 HGNC:16112|Ensembl:ENSG00000101342|HPRD:18554|Vega:OTTHUMG00000032400 20 20q11.23 chromosome 20 open reading frame 118 protein-coding C20orf118 chromosome 20 open reading frame 118 O uncharacterized protein C20orf118 20121230 -9606 140713 RPS3AP3 - bA332A4.2 HGNC:16537 20 20q11.2 ribosomal protein S3A pseudogene 3 pseudo RPS3AP3 ribosomal protein S3A pseudogene 3 O - 20121230 -9606 140714 RPS27AP3 - RPS27AP|RPS27A_8_1699|bA332A4.3 HGNC:16538 20 20q11.2 ribosomal protein S27a pseudogene 3 pseudo RPS27AP3 ribosomal protein S27a pseudogene 3 O - 20121230 -9606 140715 RPL21P2 - RPL21_65_1679|bA352D3.1 HGNC:16539 20 20p13 ribosomal protein L21 pseudogene 2 pseudo RPL21P2 ribosomal protein L21 pseudogene 2 O - 20121230 -9606 140716 RPL35AP - RPL35A_15_1710|bA456N23.1 HGNC:16546 20 20q12-q13.1 ribosomal protein L35a pseudogene pseudo RPL35AP ribosomal protein L35a pseudogene O - 20121230 -9606 140717 RPL37AP1 - RPL37A_5_1704|dJ1013A22.4 HGNC:16548 20 20q12 ribosomal protein L37a pseudogene 1 pseudo RPL37AP1 ribosomal protein L37a pseudogene 1 O - 20121230 -9606 140718 RPL31P3 - RPL31_24_1693|dJ1018D12.4 HGNC:16549 20 20p11-q11 ribosomal protein L31 pseudogene 3 pseudo RPL31P3 ribosomal protein L31 pseudogene 3 O - 20121230 -9606 140719 RPL39P - RPL39_20_1715|dJ1167H4.5 HGNC:16558 20 20q13.2 ribosomal protein L39 pseudogene pseudo RPL39P ribosomal protein L39 pseudogene O - 20121230 -9606 140730 RIMS4 - C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma HGNC:16183|MIM:611601|Ensembl:ENSG00000101098|HPRD:17977|Vega:OTTHUMG00000032546 20 20q13.12 regulating synaptic membrane exocytosis 4 protein-coding RIMS4 regulating synaptic membrane exocytosis 4 O RIM4 gamma|rab3-interacting molecule 4|regulating synaptic membrane exocytosis protein 4 20121230 -9606 140731 ANKRD60 - C20orf86|bA196N14.3 HGNC:16217|Ensembl:ENSG00000124227|HPRD:12788|Vega:OTTHUMG00000032837 20 20q13.32 ankyrin repeat domain 60 protein-coding ANKRD60 ankyrin repeat domain 60 O ankyrin repeat domain-containing protein 60 20121230 -9606 140732 SUN5 RP11-60H7.1 SPAG4L|TSARG4|dJ726C3.1 HGNC:16252|MIM:613942|Ensembl:ENSG00000167098|HPRD:15422|Vega:OTTHUMG00000032239 20 20q11.21 Sad1 and UNC84 domain containing 5 protein-coding SUN5 Sad1 and UNC84 domain containing 5 O SUN domain-containing protein 5|sad1 and UNC84 domain-containing protein 5|sperm-associated antigen 4-like protein|testis and spermatogenesis related gene 4|testis and spermatogenesis-related gene 4 protein 20121230 -9606 140733 MACROD2 RP11-189J1.1 C20orf133 HGNC:16126|MIM:611567|Ensembl:ENSG00000172264|HPRD:16640|Vega:OTTHUMG00000031919 20 20p12.1 MACRO domain containing 2 protein-coding MACROD2 MACRO domain containing 2 O MACRO domain-containing protein 2|O-acetyl-ADP-ribose deacetylase MACROD2 20121230 -9606 140735 DYNLL2 - DNCL1B|Dlc2|RSPH22 HGNC:24596|MIM:608942|Ensembl:ENSG00000121083|HPRD:06489|Vega:OTTHUMG00000178783 17 17q22 dynein, light chain, LC8-type 2 protein-coding DYNLL2 dynein, light chain, LC8-type 2 O 8 kDa dynein light chain b|DLC8b|dynein light chain 2, cytoplasmic|radial spoke 22 homolog 20121230 -9606 140738 TMEM37 - PR|PR1 HGNC:18216|Ensembl:ENSG00000171227|HPRD:15536|Vega:OTTHUMG00000153304 2 2q14.2 transmembrane protein 37 protein-coding TMEM37 transmembrane protein 37 O neuronal voltage-gated calcium channel gamma-like subunit|voltage-dependent calcium channel gamma subunit-like protein|voltage-dependent calcium channel gamma-like subunit 20121230 -9606 140739 UBE2F - NCE2 HGNC:12480|Ensembl:ENSG00000184182|HPRD:14812|Vega:OTTHUMG00000133341 2 2q37.3 ubiquitin-conjugating enzyme E2F (putative) protein-coding UBE2F ubiquitin-conjugating enzyme E2F (putative) O NEDD8 carrier protein UBE2F|NEDD8 protein ligase UBE2F|NEDD8-conjugating enzyme 2|NEDD8-conjugating enzyme UBE2F|ubiquitin-conjugating enzyme E2 F 20121230 -9606 140748 RPL17P1 - RPL17_18_1690|dJ1178H5.1 HGNC:16559 20 20p11.2 ribosomal protein L17 pseudogene 1 pseudo RPL17P1 ribosomal protein L17 pseudogene 1 O - 20121230 -9606 140749 RPL5P2 - RPL5_14_1705|dJ461P17.5 HGNC:16568 20 20q12 ribosomal protein L5 pseudogene 2 pseudo RPL5P2 ribosomal protein L5 pseudogene 2 O - 20121230 -9606 140750 RPL36P4 - RPL36_7_1697|dJ477O4.3 HGNC:16569 20 20q11.2 ribosomal protein L36 pseudogene 4 pseudo RPL36P4 ribosomal protein L36 pseudogene 4 O - 20121230 -9606 140751 RPL36P2 - RPL36_8_1711|dJ530I15.5 HGNC:16570 20 20q13.1 ribosomal protein L36 pseudogene 2 pseudo RPL36P2 ribosomal protein L36 pseudogene 2 O - 20121230 -9606 140752 RPS27AP2 - RPS27A_7_1686|dJ531H16.4 HGNC:16572 20 20p11.2 ribosomal protein S27a pseudogene 2 pseudo RPS27AP2 ribosomal protein S27a pseudogene 2 O - 20121230 -9606 140753 RPL31P2 - RPL31_25_1695|dJ553F4.5 HGNC:16575 20 20q11.2 ribosomal protein L31 pseudogene 2 pseudo RPL31P2 ribosomal protein L31 pseudogene 2 O - 20121230 -9606 140754 RPS3P1 - dJ631M13.3 HGNC:16579 20 20p12 ribosomal protein S3 pseudogene 1 pseudo RPS3P1 ribosomal protein S3 pseudogene 1 O - 20121230 -9606 140755 RPS2P1 - RPS2_26_1696|dJ64K7.1 HGNC:16580 20 20q11.2 ribosomal protein S2 pseudogene 1 pseudo RPS2P1 ribosomal protein S2 pseudogene 1 O - 20121230 -9606 140756 RPL7AP14 - RPL7AL4|RPL7A_32_1700|dJ823N20.2 HGNC:16590 20 20q11.2 ribosomal protein L7a pseudogene 14 pseudo RPL7AP14 ribosomal protein L7a pseudogene 14 O - 20121230 -9606 140757 RSL24D1P6 - RPL24P1|dJ836N17.3 HGNC:37876 20 20q11 ribosomal L24 domain containing 1 pseudogene 6 pseudo RSL24D1P6 ribosomal L24 domain containing 1 pseudogene 6 O - 20121230 -9606 140758 RPS10P2 - RPS10_15_1685|dJ858M22.1 HGNC:16594 20 20p12 ribosomal protein S10 pseudogene 2 pseudo RPS10P2 ribosomal protein S10 pseudogene 2 O - 20121230 -9606 140759 RPL19P1 - RPL19_11_1678|dJ860F19.2 HGNC:16595 20 20p13 ribosomal protein L19 pseudogene 1 pseudo RPL19P1 ribosomal protein L19 pseudogene 1 O - 20121230 -9606 140760 RPL24P2 - RPL24_5_1691|dJ872K7.2 HGNC:16597 20 20p11.23 ribosomal protein L24 pseudogene 2 pseudo RPL24P2 ribosomal protein L24 pseudogene 2 O - 20121230 -9606 140761 RPS3P2 - RPS3_4_1701|dJ927M24.3 HGNC:16603 20 20q11.2 ribosomal protein S3 pseudogene 2 pseudo RPS3P2 ribosomal protein S3 pseudogene 2 O - 20121230 -9606 140766 ADAMTS14 RP11-399N22.5 - HGNC:14899|MIM:607506|Ensembl:ENSG00000138316|HPRD:06329|Vega:OTTHUMG00000018414 10 10q21 ADAM metallopeptidase with thrombospondin type 1 motif, 14 protein-coding ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 O A disintegrin and metalloproteinase with thrombospondin motifs 14|ADAM-TS 14|ADAM-TS14|ADAMTS-14|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14|metalloprotease-disintegrin protease 20121230 -9606 140767 NRSN1 RP11-176J5.1 VMP|p24 HGNC:17881|Ensembl:ENSG00000152954|HPRD:18285|Vega:OTTHUMG00000016406 6 6p22.3 neurensin 1 protein-coding NRSN1 neurensin 1 O neurensin-1|neuro-p24|vesicular membrain protein p24|vesicular membrane protein of 24 kDa|vesicular membrane protein p24 20121230 -9606 140768 SMCR2 - - HGNC:17914 17 - Smith-Magenis syndrome chromosome region, candidate 2 (non-protein coding) unknown SMCR2 Smith-Magenis syndrome chromosome region, candidate 2 (non-protein coding) O - 20121021 -9606 140769 SMCR3 - - HGNC:17915 17 - Smith-Magenis syndrome chromosome region, candidate 3 unknown SMCR3 Smith-Magenis syndrome chromosome region, candidate 3 O - 20120508 -9606 140771 SMCR5 - NCRNA00034 HGNC:17918 17 - Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding) miscRNA SMCR5 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding) O - 20121230 -9606 140772 SMCR6 - - HGNC:17919 17 - Smith-Magenis syndrome chromosome region, candidate 6 unknown SMCR6 Smith-Magenis syndrome chromosome region, candidate 6 O - 20120508 -9606 140775 SMCR8 - - HGNC:17921|Ensembl:ENSG00000176994|HPRD:18075|Vega:OTTHUMG00000059394 17 17p11.2 Smith-Magenis syndrome chromosome region, candidate 8 protein-coding SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 O Smith-Magenis syndrome chromosomal region candidate gene 8 protein 20121230 -9606 140776 SMCR9 - - HGNC:17913 17 17p11.2 Smith-Magenis syndrome chromosome region, candidate 9 protein-coding SMCR9 Smith-Magenis syndrome chromosome region, candidate 9 O uncharacterized protein LOC140776 20121230 -9606 140777 PDB5 - - HGNC:17951 2 2q36 Paget disease of bone 5 unknown PDB5 Paget disease of bone 5 O - 20110215 -9606 140778 PDB6 - - HGNC:17952 10 10p13 Paget disease of bone 6 unknown PDB6 Paget disease of bone 6 O - 20110215 -9606 140801 RPL10L - RPL10_5_1358 HGNC:17976|Ensembl:ENSG00000165496|HPRD:11753|Vega:OTTHUMG00000157869 14 14q21.2 ribosomal protein L10-like protein-coding RPL10L ribosomal protein L10-like O 60S ribosomal protein L10-like|ribosomal protein L10-like protein 20121230 -9606 140802 LGV1 - - MIM:152430 4 4q25 longevity 1 unknown - - - - 20120622 -9606 140803 TRPM6 RP11-174B4.1 CHAK2|HMGX|HOMG|HOMG1|HSH HGNC:17995|MIM:607009|Ensembl:ENSG00000119121|HPRD:06112|Vega:OTTHUMG00000020027 9 9q21.13 transient receptor potential cation channel, subfamily M, member 6 protein-coding TRPM6 transient receptor potential cation channel, subfamily M, member 6 O channel kinase 2|melastatin-related TRP cation channel 6|transient receptor potential cation channel subfamily M member 6 20121230 -9606 140805 HT - - MIM:140300 8 8q23-q24 Hashimoto thyroiditis unknown - - - - 20120622 -9606 140807 KRT72 - K6IRS2|K6irs|KRT6|KRT6IRS2 HGNC:28932|MIM:608246|Ensembl:ENSG00000170486|HPRD:09746|Vega:OTTHUMG00000169744 12 12q13.13 keratin 72 protein-coding KRT72 keratin 72 O CK-72|K72|cytokeratin-72|keratin 6, inner root sheath, 2|keratin protein K6irs|keratin, type II cytoskeletal 72|keratin-72|type II inner root sheath-specific keratin-K6irs2|type-II keratin Kb35 20121230 -9606 140809 SRXN1 - C20orf139|Npn3|SRX|SRX1 HGNC:16132|Ensembl:ENSG00000172070|HPRD:12747|Vega:OTTHUMG00000031644 20 20p13 sulfiredoxin 1 protein-coding SRXN1 sulfiredoxin 1 O sulfiredoxin-1 20121230 -9606 140821 RSS - SRS HGNC:10462|MIM:180860 17 17q25 Russell Silver syndrome unknown RSS Russell Silver syndrome O - 20120622 -9606 140823 ROMO1 RP11-353C18.54-005 C20orf52|MTGM|MTGMP|bA353C18.2 HGNC:16185|Ensembl:ENSG00000125995|HPRD:12774|Vega:OTTHUMG00000032360 20 20q11.22 reactive oxygen species modulator 1 protein-coding ROMO1 reactive oxygen species modulator 1 O ROS modulator 1|epididymis tissue protein Li 175|glyrichin|mitochondrial targeting GXXXG protein|mitochondrial targeting GxxxG motif protein|protein MGR2 homolog 20121230 -9606 140825 NEURL2 - C20orf163|OZZ|Ozz-E3 HGNC:16156|MIM:608597|Ensembl:ENSG00000124257|HPRD:16353|Vega:OTTHUMG00000032626 20 20q13.12 neuralized homolog 2 (Drosophila) protein-coding NEURL2 neuralized homolog 2 (Drosophila) O neuralized-like 2|neuralized-like protein 2 20121230 -9606 140828 LINC00261 hCG_2045836 C20orf56|NCRNA00261|bA216C10.1|dJ788L20.2 HGNC:16189 20 20p11.21 long intergenic non-protein coding RNA 261 miscRNA LINC00261 long intergenic non-protein coding RNA 261 O - 20121230 -9606 140831 ZSWIM3 - C20orf164 HGNC:16157|Ensembl:ENSG00000132801|HPRD:15903|Vega:OTTHUMG00000032627 20 20q13.12 zinc finger, SWIM-type containing 3 protein-coding ZSWIM3 zinc finger, SWIM-type containing 3 O zinc finger SWIM domain-containing protein 3|zinc finger, SWIM domain containing 3 20121230 -9606 140832 WFDC10A - C20orf146|WAP10|dJ688G8.3 HGNC:16139|Ensembl:ENSG00000180305|HPRD:15671|Vega:OTTHUMG00000046331 20 20q13.12 WAP four-disulfide core domain 10A protein-coding WFDC10A WAP four-disulfide core domain 10A O WAP four-disulfide core domain protein 10A|putative protease inhibitor WAP10A 20121230 -9606 140834 C20orf62 - dJ1013A22.3 HGNC:16195|HPRD:18555 20 20q13.12 chromosome 20 open reading frame 62 other C20orf62 chromosome 20 open reading frame 62 O - 20121021 -9606 140836 BANF2 RP4-803K15.1 BAF-L|BAF2|BAFL|C20orf179 HGNC:16172|Ensembl:ENSG00000125888|HPRD:12759|Vega:OTTHUMG00000031949 20 20p12.1 barrier to autointegration factor 2 protein-coding BANF2 barrier to autointegration factor 2 O barrier-to-autointegration factor 2|barrier-to-autointegration factor-like protein 20121230 -9606 140838 NANP - C20orf147|HDHD4|dJ694B14.3 HGNC:16140|MIM:610763|Ensembl:ENSG00000170191|HPRD:17097|Vega:OTTHUMG00000032132 20 20p11.1 N-acetylneuraminic acid phosphatase protein-coding NANP N-acetylneuraminic acid phosphatase O N-acylneuraminate-9-phosphatase|Neu5Ac-9-Pase|haloacid dehalogenase-like hydrolase domain containing 4|haloacid dehalogenase-like hydrolase domain-containing protein 4 20121230 -9606 140846 FAM83C-AS1 - C20orf120|NCRNA00154|dJ614O4.3 HGNC:16113 20 - FAM83C antisense RNA 1 miscRNA FAM83C-AS1 FAM83C antisense RNA 1 O - 20121021 -9606 140848 MACROD2-IT1 - C20orf68|NCRNA00227|bA467D7.4 HGNC:16201 20 - MACROD2 intronic transcript 1 (non-protein coding) miscRNA MACROD2-IT1 MACROD2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 140849 LINC00266-1 - C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3 HGNC:16202 20 20q13.33 long intergenic non-protein coding RNA 266-1 miscRNA LINC00266-1 long intergenic non-protein coding RNA 266-1 O - 20121230 -9606 140850 DEFB127 UNQ1956/PRO6071 C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27 HGNC:16206|Ensembl:ENSG00000088782|HPRD:10877|Vega:OTTHUMG00000031617 20 20p13 defensin, beta 127 protein-coding DEFB127 defensin, beta 127 O beta defensin 27|beta-defensin 127|beta-defensin 27 20121230 -9606 140851 MT1P3 - C20orf127|MTL4|dJ614O4.6 HGNC:16120|HPRD:16639 20 20q11.2 metallothionein 1 pseudogene 3 pseudo MT1P3 metallothionein 1 pseudogene 3 O - 20121230 -9606 140856 SCP2D1 - C20orf79|HSD22|dJ1068E13.2 HGNC:16211|Ensembl:ENSG00000132631|HPRD:12785|Vega:OTTHUMG00000031983 20 20p11.23 SCP2 sterol-binding domain containing 1 protein-coding SCP2D1 SCP2 sterol-binding domain containing 1 O sterol carrier protein 2-like protein|uncharacterized protein C20orf79 20121230 -9606 140857 RPL7P3 - dJ353C17.2 HGNC:16566 20 20q13.33 ribosomal protein L7 pseudogene 3 pseudo RPL7P3 ribosomal protein L7 pseudogene 3 O - 20121230 -9606 140862 ISM1 RP11-149I18.1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 HGNC:16213|Ensembl:ENSG00000101230|Vega:OTTHUMG00000031902 20 20p12.1 isthmin 1 homolog (zebrafish) protein-coding ISM1 isthmin 1 homolog (zebrafish) O isthmin-1 20121230 -9606 140863 SPINT5P hCG_1647457 C20orf168|dJ447F3.6 HGNC:16161 20 - serine peptidase inhibitor, Kunitz type 5, pseudogene pseudo SPINT5P serine peptidase inhibitor, Kunitz type 5, pseudogene O - 20121021 -9606 140865 LINC00686 RP11-93B14.7 C20orf90|bA93B14.2 HGNC:16221 20 - long intergenic non-protein coding RNA 686 miscRNA LINC00686 long intergenic non-protein coding RNA 686 O - 20121110 -9606 140870 WFDC6 RP3-461P17.11-002 C20orf171|WAP6|dJ461P17.11 HGNC:16164|Ensembl:ENSG00000243543|HPRD:15677|Vega:OTTHUMG00000046354 20 20q13.12 WAP four-disulfide core domain 6 protein-coding WFDC6 WAP four-disulfide core domain 6 O WAP four-disulfide core domain protein 6|protease inhibitor WAP6 20121230 -9606 140871 CFTRP1 - C20orf189|dJ760C5.1 HGNC:16182 20 20p11.1 cystic fibrosis transmembrane conductance regulator pseudogene 1 pseudo CFTRP1 cystic fibrosis transmembrane conductance regulator pseudogene 1 O - 20121230 -9606 140873 C20orf173 RP3-477O4.3 dJ477O4.4 HGNC:16166|Ensembl:ENSG00000125975|HPRD:12756|Vega:OTTHUMG00000032340 20 20q11.22 chromosome 20 open reading frame 173 protein-coding C20orf173 chromosome 20 open reading frame 173 O uncharacterized protein C20orf173 20121230 -9606 140875 LINC00028 - C20orf93|NCRNA00028|dJ1093G12.6 HGNC:16224 20 20q11.21 long intergenic non-protein coding RNA 28 miscRNA LINC00028 long intergenic non-protein coding RNA 28 O - 20121230 -9606 140876 FAM65C - C20orf175|C20orf176|dJ530I15.2|dJ530I15.3 HGNC:16168|Ensembl:ENSG00000042062|HPRD:12757|Vega:OTTHUMG00000032724 20 20q13.13 family with sequence similarity 65, member C protein-coding FAM65C family with sequence similarity 65, member C O protein FAM65C 20121230 -9606 140879 C20orf176 - dJ530I15.3 HGNC:16169 20 20q13.13 chromosome 20 open reading frame 176 unknown C20orf176 chromosome 20 open reading frame 176 O - 20081012 -9606 140880 CST11 - CST8L|CTES2|SC13|dJ322G13.6 HGNC:15959|MIM:609731|Ensembl:ENSG00000125831|HPRD:16767|Vega:OTTHUMG00000032060 20 20p11.21 cystatin 11 protein-coding CST11 cystatin 11 O SC13delta|cystatin-11|cystatin-related epididymal-specific protein 20121230 -9606 140881 DEFB129 UNQ5794/PRO19599 C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29 HGNC:16218|HPRD:10878 20 20p13 defensin, beta 129 protein-coding DEFB129 defensin, beta 129 O beta defensin 29|beta-defensin 129|beta-defensin 29 20121230 -9606 140883 ZNF280B - 5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632 HGNC:23022|Ensembl:ENSG00000198477|HPRD:11615|Vega:OTTHUMG00000151066 22 22q11.22 zinc finger protein 280B protein-coding ZNF280B zinc finger protein 280B O suppressor of hairy wing homolog 2|zinc finger protein 279|zinc finger protein 632 20121230 -9606 140885 SIRPA RP4-684O24.2 BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP HGNC:9662|MIM:602461|Ensembl:ENSG00000198053|HPRD:03912|Vega:OTTHUMG00000031682 20 20p13 signal-regulatory protein alpha protein-coding SIRPA signal-regulatory protein alpha O CD172 antigen-like family member A|brain-immunoglobulin-like molecule with tyrosine-based activation motifs|inhibitory receptor SHPS-1|macrophage fusion receptor|myd-1 antigen|tyrosine phosphatase SHP substrate 1|tyrosine-protein phosphatase non-receptor type substrate 1 20121230 -9606 140886 PABPC5 RP13-24G8.3 PABP5 HGNC:13629|MIM:300407|Ensembl:ENSG00000174740|HPRD:02324|Vega:OTTHUMG00000021959 X Xq21.3 poly(A) binding protein, cytoplasmic 5 protein-coding PABPC5 poly(A) binding protein, cytoplasmic 5 O polyadenylate-binding protein 5 20121230 -9606 140890 SREK1 - SFRS12|SRrp508|SRrp86 HGNC:17882|MIM:609268|Ensembl:ENSG00000153914|HPRD:18043|Vega:OTTHUMG00000097809 5 5q12.3 splicing regulatory glutamine/lysine-rich protein 1 protein-coding SREK1 splicing regulatory glutamine/lysine-rich protein 1 O serine-arginine-rich splicing regulatory protein 508|serine/arginine-rich-splicing regulatory protein 86|splicing factor, arginine/serine-rich 12|splicing regulatory protein 508 20121230 -9606 140892 TCPT - - MIM:188025 11 11q23 thrombocytopenia, Paris-Trousseau type unknown - - - - 20110215 -9606 140893 RBBP8NL RP5-908M14.6 C20orf151 HGNC:16144|Ensembl:ENSG00000130701|HPRD:12751|Vega:OTTHUMG00000032913 20 20q13.33 RBBP8 N-terminal like protein-coding RBBP8NL RBBP8 N-terminal like O uncharacterized protein C20orf151 20121230 -9606 140894 CNBD2 RP5-954P9.1 C20orf152|CNMPD1|dJ954P9.1 HGNC:16145|Ensembl:ENSG00000149646|HPRD:09838|Vega:OTTHUMG00000032371 20 20q11.23 cyclic nucleotide binding domain containing 2 protein-coding CNBD2 cyclic nucleotide binding domain containing 2 O cyclic nucleotide (cNMP) binding domain containing 1|uncharacterized protein C20orf152 20121230 -9606 140895 HSPE1P1 - HSPEP1|bA101E14.1 HGNC:16530 20 20q12 heat shock 10kDa protein 1 (chaperonin 10) pseudogene 1 pseudo HSPE1P1 heat shock 10kDa protein 1 (chaperonin 10) pseudogene 1 O - 20121230 -9606 140901 STK35 - CLIK1|STK35L1 HGNC:16254|MIM:609370|Ensembl:ENSG00000125834|HPRD:11612|Vega:OTTHUMG00000031688 20 20p13 serine/threonine kinase 35 protein-coding STK35 serine/threonine kinase 35 O CLIK-1|CLP-36 interacting kinase|CLP-36-interacting kinase 1|PDLIM1-interacting kinase 1|serine threonine kinase 35 long form|serine/threonine-protein kinase 35|serine/threonine-protein kinase 35 L1 20121230 -9606 140902 R3HDML - dJ881L22.3 HGNC:16249|Ensembl:ENSG00000101074|HPRD:17945|Vega:OTTHUMG00000032524 20 20q13.12 R3H domain containing-like protein-coding R3HDML R3H domain containing-like O R3H domain (binds single-stranded nucleic acids) containing-like|cysteine-rich secretory protein R3HDML|peptidase inhibitor R3HDML 20121230 -9606 140906 SPG18 - - HGNC:18009|MIM:611225 - - spastic paraplegia 18 (autosomal dominant) unknown SPG18 spastic paraplegia 18 (autosomal dominant) O - 20120622 -9606 140907 SPG19 - - HGNC:16706|MIM:607152 9 9q spastic paraplegia 19 (autosomal dominant) unknown SPG19 spastic paraplegia 19 (autosomal dominant) O - 20120622 -9606 140909 MTCO2P1 - MTCO2L|dJ342K12.1 HGNC:16564 20 20q13.33 MT-CO2 pseudogene 1 pseudo MTCO2P1 MT-CO2 pseudogene 1 O - 20121230 -9606 140913 PPIAP10 - CRP|PPIAL2|PPIP10|dJ823G15.1 HGNC:9264 20 20q13.2 peptidylprolyl isomerase A (cyclophilin A) pseudogene 10 pseudo PPIAP10 peptidylprolyl isomerase A (cyclophilin A) pseudogene 10 O - 20121230 -9606 140921 PPP2R5CP - - HGNC:17835 3 3p21.3 protein phosphatase 2, regulatory subunit B', gamma pseudogene pseudo PPP2R5CP protein phosphatase 2, regulatory subunit B', gamma pseudogene O - 20121230 -9606 140947 C5orf20 - DCNP1 HGNC:24459|MIM:609710|Ensembl:ENSG00000251380|HPRD:16786|Vega:OTTHUMG00000163308 5 5q31.1 chromosome 5 open reading frame 20 protein-coding C5orf20 chromosome 5 open reading frame 20 O dendritic cell nuclear protein 1 20121230 -9606 142678 MIB2 RP11-345P4.1 ZZANK1|ZZZ5 HGNC:30577|MIM:611141|Ensembl:ENSG00000197530|HPRD:15905|Vega:OTTHUMG00000074647 1 1p36.33 mindbomb E3 ubiquitin protein ligase 2 protein-coding MIB2 mindbomb E3 ubiquitin protein ligase 2 O E3 ubiquitin-protein ligase MIB2|mind bomb homolog 2|mindbomb homolog 2|novel zinc finger protein|novelzin|putative NF-kappa-B-activating protein 002N|skeletrophin|zinc finger ZZ type with ankyrin repeat domain protein 1|zinc finger, ZZ type with ankyrin repeat domain 1 20121230 -9606 142679 DUSP19 - DUSP17|LMWDSP3|SKRP1|TS-DSP1 HGNC:18894|MIM:611437|Ensembl:ENSG00000162999|HPRD:13254|Vega:OTTHUMG00000132622 2 2q32.1 dual specificity phosphatase 19 protein-coding DUSP19 dual specificity phosphatase 19 O LMW-DSP3|SAPK pathway-regulating phosphatase 1|dual specificity phosphatase TS-DSP1|dual specificity protein phosphatase 19|low molecular weight dual specificity phosphatase 3|protein phosphatase SKRP1|stress-activated protein kinase pathway-regulating phosphatase 1 20121230 -9606 142680 SLC34A3 - HHRH|NPTIIc HGNC:20305|MIM:609826|Ensembl:ENSG00000198569|HPRD:10236|Vega:OTTHUMG00000131780 9 9q34 solute carrier family 34 (sodium phosphate), member 3 protein-coding SLC34A3 solute carrier family 34 (sodium phosphate), member 3 O Na(+)-dependent phosphate cotransporter 2C|Na(+)/Pi cotransporter 2C|naPi-2c|sodium-dependent phosphate transport protein 2C|sodium-phosphate transport protein 2C|sodium/inorganic phosphate cotransporter IIC|type IIc Na+/Pi cotransporter 20121230 -9606 142683 ITLN2 UNQ2789/PRO7179 HL-2|HL2 HGNC:20599|MIM:609874|Ensembl:ENSG00000158764|HPRD:17166|Vega:OTTHUMG00000028605 1 1q22-q23 intelectin 2 protein-coding ITLN2 intelectin 2 O endothelial lectin HL-2|intelectin-2 20121230 -9606 142684 RAB40A LL0XNC01-250H12.1 RAR2|RAR2A HGNC:18283|Ensembl:ENSG00000172476|HPRD:06705|Vega:OTTHUMG00000022100 X Xq22.1 RAB40A, member RAS oncogene family protein-coding RAB40A RAB40A, member RAS oncogene family O SOCS box containing protein RAR2A|SOCS box-containing protein RAR2A|protein Rar-2|ras-related protein Rab-40A 20121230 -9606 142685 ASB15 - - HGNC:19767|Ensembl:ENSG00000146809|HPRD:10669|Vega:OTTHUMG00000157114 7 7q31.31 ankyrin repeat and SOCS box containing 15 protein-coding ASB15 ankyrin repeat and SOCS box containing 15 O ASB-15|ankyrin repeat and SOCS box protein 15|ankyrin repeat and SOCS box-containing 15 20121230 -9606 142686 ASB14 - - HGNC:19766|Ensembl:ENSG00000239388|HPRD:10668|Vega:OTTHUMG00000158602 3 3p21.1 ankyrin repeat and SOCS box containing 14 protein-coding ASB14 ankyrin repeat and SOCS box containing 14 O ankyrin repeat and SOCS box protein 14|ankyrin repeat and SOCS box-containing 14|ankyrin repeat domain-containing SOCS box protein Asb-14 20121230 -9606 142689 ASB12 RP11-284B18.4 - HGNC:19763|Ensembl:ENSG00000198881|HPRD:06451|Vega:OTTHUMG00000021705 X Xq11.2 ankyrin repeat and SOCS box containing 12 protein-coding ASB12 ankyrin repeat and SOCS box containing 12 O ankyrin repeat and SOCS box protein 12|ankyrin repeat and SOCS box-containing 12|ankyrin repeat domain-containing SOCS box protein Asb-12 20121230 -9606 142827 C10orf129 - ACSM6|bA310E22.3 HGNC:31665|Ensembl:ENSG00000173124|HPRD:12565|Vega:OTTHUMG00000018808 10 10q23.33 chromosome 10 open reading frame 129 protein-coding C10orf129 chromosome 10 open reading frame 129 O AMP-binding enzyme|acyl-coenzyme A synthetase ACSM6, mitochondrial 20121230 -9606 142891 SAMD8 RP11-487I5.5 SMSr HGNC:26320|MIM:611575|Ensembl:ENSG00000156671|HPRD:18014|Vega:OTTHUMG00000018515 10 10q22.2 sterile alpha motif domain containing 8 protein-coding SAMD8 sterile alpha motif domain containing 8 O CPE synthase|SAM domain-containing protein 8|ceramide phosphoethanolamine synthase|sphingomyelin synthase related|sphingomyelin synthase-related protein 1|sterile alpha motif domain-containing protein 8 20121230 -9606 142910 LIPJ - LIPL1|bA425M17.2 HGNC:21773|MIM:613921|Ensembl:ENSG00000204022|HPRD:17281|Vega:OTTHUMG00000018691 10 10q23.31 lipase, family member J protein-coding LIPJ lipase, family member J O lipase J|lipase member J|lipase-like abhydrolase domain-containing protein 1|lipase-like, ab-hydrolase domain containing 1 20121230 -9606 142913 CFL1P1 - CFLP1 HGNC:28560 10 10q23.31 cofilin 1 (non-muscle) pseudogene 1 pseudo CFL1P1 cofilin 1 (non-muscle) pseudogene 1 O - 20121230 -9606 142937 LOC142937 - - - 10 10p15.1 uncharacterized protein BC008131 unknown - - - - 20120511 -9606 142940 TRUB1 - PUS4 HGNC:16060|MIM:610726|Ensembl:ENSG00000165832|HPRD:18229|Vega:OTTHUMG00000019094 10 10q25.3 TruB pseudouridine (psi) synthase homolog 1 (E. coli) protein-coding TRUB1 TruB pseudouridine (psi) synthase homolog 1 (E. coli) O probable tRNA pseudouridine synthase 1 20121230 -9606 143098 MPP7 RP11-218D6.5 - HGNC:26542|MIM:610973|Ensembl:ENSG00000150054|HPRD:14733|Vega:OTTHUMG00000017868 10 10p12.1 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) protein-coding MPP7 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) O MAGUK p55 subfamily member 7 20121230 -9606 143153 FLJ31958 - - HPRD:08114 10 10q11.23 uncharacterized LOC143153 unknown - - - - 20120508 -9606 143162 FRMPD2 - PDZD5C|PDZK4|PDZK5C HGNC:28572|MIM:613323|Ensembl:ENSG00000170324|HPRD:17019|Vega:OTTHUMG00000018171 10 10q11.22 FERM and PDZ domain containing 2 protein-coding FRMPD2 FERM and PDZ domain containing 2 O FERM and PDZ domain-containing protein 2|PDZ domain containing 5C|PDZ domain-containing protein 4 20121230 -9606 143187 VTI1A RP11-25C19.2 MVti1|VTI1RP2|Vti1-rp2 HGNC:17792|MIM:614316|Ensembl:ENSG00000151532|HPRD:18290|Vega:OTTHUMG00000019063 10 10q25.2 vesicle transport through interaction with t-SNAREs 1A protein-coding VTI1A vesicle transport through interaction with t-SNAREs 1A O SNARE Vti1a-beta protein|vesicle transport through interaction with t-SNAREs homolog 1A|vesicle transport v-SNARE protein Vti1-like 2 20121230 -9606 143188 LOC143188 - - - 10 10q25.2 uncharacterized LOC143188 miscRNA - - - - 20121017 -9606 143241 DYDC1 RSD9 DPY30D1 HGNC:23460|Ensembl:ENSG00000170788|HPRD:14062|Vega:OTTHUMG00000018609 10 10q23.1 DPY30 domain containing 1 protein-coding DYDC1 DPY30 domain containing 1 O DPY30 domain-containing protein 1 20121230 -9606 143244 EIF5AL1 RP11-342M3.3 EIF5AP1|bA342M3.3 HGNC:17419|Ensembl:ENSG00000253626|Vega:OTTHUMG00000018563 10 10q22.3 eukaryotic translation initiation factor 5A-like 1 protein-coding EIF5AL1 eukaryotic translation initiation factor 5A-like 1 O eukaryotic translation initiation factor 5A pseudogene 1|eukaryotic translation initiation factor 5A-1-like 20121230 -9606 143279 HECTD2 RP11-108M11.2 - HGNC:26736|Ensembl:ENSG00000165338|HPRD:13643|Vega:OTTHUMG00000018742 10 10q23.32 HECT domain containing E3 ubiquitin protein ligase 2 protein-coding HECTD2 HECT domain containing E3 ubiquitin protein ligase 2 O HECT domain containing 2|HECT domain-containing protein 2|probable E3 ubiquitin-protein ligase HECTD2 20121230 -9606 143282 FGFBP3 PSEC0101 C10orf13|FGF-BP3 HGNC:23428|Ensembl:ENSG00000174721|HPRD:08499|Vega:OTTHUMG00000018751 10 10q23.32 fibroblast growth factor binding protein 3 protein-coding FGFBP3 fibroblast growth factor binding protein 3 O FGF-binding protein 3|FGFBP-3|fibroblast growth factor-binding protein 3 20121230 -9606 143286 LOC143286 - - - 10 10q24.32 uncharacterized LOC143286 protein-coding - - - - 20111113 -9606 143341 EIF3LP2 - EIF3EIPP2|EIF3S6IPP2 HGNC:24657 10 10q11.21 eukaryotic translation initiation factor 3, subunit L pseudogene 2 pseudo EIF3LP2 eukaryotic translation initiation factor 3, subunit L pseudogene 2 O - 20121230 -9606 143371 YWHAZP3 - - HGNC:31101 10 10p12.2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 3 pseudo YWHAZP3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 3 O - 20121230 -9606 143379 C10orf82 - - HGNC:28500|Ensembl:ENSG00000165863|HPRD:12592|Vega:OTTHUMG00000019105 10 10q25.3 chromosome 10 open reading frame 82 protein-coding C10orf82 chromosome 10 open reading frame 82 O uncharacterized protein C10orf82 20121230 -9606 143384 CACUL1 - C10orf46|CAC1 HGNC:23727|Ensembl:ENSG00000151893|HPRD:12576|Vega:OTTHUMG00000019138 10 10q26.11 CDK2-associated, cullin domain 1 protein-coding CACUL1 CDK2-associated, cullin domain 1 O CDK2-associated and cullin domain-containing protein 1|Cdk-Associated Cullin1|cullin 20121230 -9606 143425 SYT9 - - HGNC:19265|MIM:613528|Ensembl:ENSG00000170743|HPRD:11618|Vega:OTTHUMG00000165499 11 11p15.4 synaptotagmin IX protein-coding SYT9 synaptotagmin IX O synaptotagmin-9|sytIX 20121230 -9606 143458 LDLRAD3 - LRAD3 HGNC:27046|Ensembl:ENSG00000179241|HPRD:14063|Vega:OTTHUMG00000166313 11 11p13 low density lipoprotein receptor class A domain containing 3 protein-coding LDLRAD3 low density lipoprotein receptor class A domain containing 3 O low-density lipoprotein receptor class A domain-containing protein 3 20121230 -9606 143471 PSMA8 - PSMA7L HGNC:22985|Ensembl:ENSG00000154611|HPRD:11322|Vega:OTTHUMG00000179426 18 18q11.2 proteasome (prosome, macropain) subunit, alpha type, 8 protein-coding PSMA8 proteasome (prosome, macropain) subunit, alpha type, 8 O proteasome subunit alpha type-7-like 20121230 -9606 143496 OR52B4 - OR11-3 HGNC:15209|Ensembl:ENSG00000221996|HPRD:15007|Vega:OTTHUMG00000154222 11 11p15.4 olfactory receptor, family 52, subfamily B, member 4 protein-coding OR52B4 olfactory receptor, family 52, subfamily B, member 4 O olfactory receptor 52B4|olfactory receptor OR11-3 20121230 -9606 143501 C11orf40 - NOV1 HGNC:23986|Ensembl:ENSG00000171987|HPRD:17643|Vega:OTTHUMG00000165345 11 11p15.5 chromosome 11 open reading frame 40 protein-coding C11orf40 chromosome 11 open reading frame 40 O putative uncharacterized protein C11orf40|ro/SSA1-related protein 20121230 -9606 143502 OR52I2 - OR11-12 HGNC:15221|Ensembl:ENSG00000226288|HPRD:15016|Vega:OTTHUMG00000165721 11 11p15.4 olfactory receptor, family 52, subfamily I, member 2 protein-coding OR52I2 olfactory receptor, family 52, subfamily I, member 2 O olfactory receptor 52I2|olfactory receptor OR11-12 20121230 -9606 143503 OR51E1 - D-GPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 HGNC:15194|MIM:611267|Ensembl:ENSG00000180785|HPRD:14996|Vega:OTTHUMG00000157024 11 11p15.4 olfactory receptor, family 51, subfamily E, member 1 protein-coding OR51E1 olfactory receptor, family 51, subfamily E, member 1 O Dresden-G-protein-coupled receptor|G-protein coupled receptor 164|olfactory receptor 51E1|olfactory receptor 52A3|olfactory receptor OR11-15|olfactory receptor, family 51, subfamily E, member 1 pseudogene|olfactory receptor, family 52, subfamily A, member 3 pseudogene|prostate overexpressed G protein-coupled receptor|prostate-overexpressed G protein-coupled receptor|prostate-specific G protein-coupled receptor 2 20121230 -9606 143506 SSU72P3 - - HGNC:43622 11 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 3 pseudo SSU72P3 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 3 O - 20121230 -9606 143543 RBMXP3 - - HGNC:33949 11 11q14.1 RNA binding motif protein, X-linked pseudogene 3 pseudo RBMXP3 RNA binding motif protein, X-linked pseudogene 3 O - 20121230 -9606 143570 XRRA1 - - HGNC:18868|MIM:609788|Ensembl:ENSG00000166435|Vega:OTTHUMG00000165515 11 11q13.4 X-ray radiation resistance associated 1 protein-coding XRRA1 X-ray radiation resistance associated 1 O X-ray radiation resistance-associated protein 1 20121230 -9606 143630 UBQLNL - - HGNC:28294|Ensembl:ENSG00000175518|HPRD:14472|Vega:OTTHUMG00000066903 11 11p15.4 ubiquilin-like protein-coding UBQLNL ubiquilin-like O ubiquilin-like protein 20121230 -9606 143662 MUC15 UNQ750/PRO1481 MUC-15|PAS3|PASIII HGNC:14956|MIM:608566|Ensembl:ENSG00000169550|HPRD:16349|Vega:OTTHUMG00000166112 11 11p14.3 mucin 15, cell surface associated protein-coding MUC15 mucin 15, cell surface associated O mucin-15 20121230 -9606 143666 LOC143666 - - - 11 11p15.5 uncharacterized LOC143666 miscRNA - - - - 20121230 -9606 143678 C11orf94 - - HGNC:37213|Ensembl:ENSG00000234776|Vega:OTTHUMG00000167004 11 11p11.2 chromosome 11 open reading frame 94 protein-coding C11orf94 chromosome 11 open reading frame 94 O uncharacterized protein C11orf94 20121230 -9606 143684 FAM76B - - HGNC:28492|Ensembl:ENSG00000077458|HPRD:11333|Vega:OTTHUMG00000167739 11 11q21 family with sequence similarity 76, member B protein-coding FAM76B family with sequence similarity 76, member B O protein FAM76B 20121230 -9606 143686 SESN3 - SEST3 HGNC:23060|MIM:607768|Ensembl:ENSG00000149212|HPRD:09682|Vega:OTTHUMG00000167829 11 11q21 sestrin 3 protein-coding SESN3 sestrin 3 O sestrin-3 20121230 -9606 143689 PIWIL4 - HIWI2|MIWI2 HGNC:18444|MIM:610315|Ensembl:ENSG00000134627|HPRD:11435|Vega:OTTHUMG00000167811 11 11q21 piwi-like 4 (Drosophila) protein-coding PIWIL4 piwi-like 4 (Drosophila) O piwi-like protein 4 20121230 -9606 143872 ARHGAP42 - GRAF3 HGNC:26545|Ensembl:ENSG00000165895|Vega:OTTHUMG00000167530 11 11q22.1 Rho GTPase activating protein 42 protein-coding ARHGAP42 Rho GTPase activating protein 42 O rho GTPase-activating protein 42|rho-type GTPase-activating protein 42 20121230 -9606 143879 KBTBD3 - BKLHD3 HGNC:22934|Ensembl:ENSG00000182359|HPRD:10005|Vega:OTTHUMG00000166251 11 11q22.3 kelch repeat and BTB (POZ) domain containing 3 protein-coding KBTBD3 kelch repeat and BTB (POZ) domain containing 3 O BTB and kelch domain containing 3|BTB and kelch domain-containing protein 3|kelch repeat and BTB domain-containing protein 3 20121230 -9606 143884 CWF19L2 - - HGNC:26508|Ensembl:ENSG00000152404|HPRD:13102|Vega:OTTHUMG00000152975 11 11q22.3 CWF19-like 2, cell cycle control (S. pombe) protein-coding CWF19L2 CWF19-like 2, cell cycle control (S. pombe) O CWF19-like protein 2 20121230 -9606 143888 KDELC2 UNQ1904/PRO4350 - HGNC:28496|Ensembl:ENSG00000178202|HPRD:13773|Vega:OTTHUMG00000166535 11 11q22.3 KDEL (Lys-Asp-Glu-Leu) containing 2 protein-coding KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 2 O KDEL motif-containing protein 2 20121230 -9606 143903 LAYN UNQ208/PRO234 - HGNC:29471|Ensembl:ENSG00000204381|HPRD:17299|Vega:OTTHUMG00000166721 11 11q23.1 layilin protein-coding LAYN layilin O - 20121230 -9606 143941 TTC36 - HBP21 HGNC:33708|Ensembl:ENSG00000172425|Vega:OTTHUMG00000166338 11 11q23.3 tetratricopeptide repeat domain 36 protein-coding TTC36 tetratricopeptide repeat domain 36 O HSP70 binding protein 21|HSP70-binding protein 21|TPR repeat protein 36|tetratricopeptide repeat protein 36 20121230 -9606 144017 LOC144017 - - - 11 11p15.3 uncharacterized LOC144017 unknown - - - - 20120508 -9606 144097 C11orf84 - - HGNC:25115|Ensembl:ENSG00000168005|HPRD:14064|Vega:OTTHUMG00000167746 11 11q13.1 chromosome 11 open reading frame 84 protein-coding C11orf84 chromosome 11 open reading frame 84 O hypothetical protein BC007540|uncharacterized protein C11orf84 20121230 -9606 144100 PLEKHA7 hCG_2040524 - HGNC:27049|MIM:612686|Ensembl:ENSG00000166689|HPRD:15142|Vega:OTTHUMG00000165954 11 11p15.1 pleckstrin homology domain containing, family A member 7 protein-coding PLEKHA7 pleckstrin homology domain containing, family A member 7 O PH domain-containing family A member 7|pleckstrin homology domain containing, family A member 2|pleckstrin homology domain-containing family A member 7 20121230 -9606 144106 ST13P5 - FAM10A5 HGNC:18556|HPRD:13288 11 11p15.1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 5 pseudo ST13P5 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 5 O - 20121230 -9606 144108 SPTY2D1 - - HGNC:26818|Ensembl:ENSG00000179119|HPRD:13436|Vega:OTTHUMG00000167733 11 11p15.1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) protein-coding SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) O SPT2 domain-containing protein 1|protein SPT2 homolog 20121230 -9606 144110 TMEM86A - - HGNC:26890|Ensembl:ENSG00000151117|HPRD:08292|Vega:OTTHUMG00000167680 11 11p15.1 transmembrane protein 86A protein-coding TMEM86A transmembrane protein 86A O lysoplasmalogenase-like protein TMEM86A 20121230 -9606 144124 OR10A5 - JCG6|OR10A1|OR11-403 HGNC:15131|MIM:608493|Ensembl:ENSG00000166363|HPRD:16339|Vega:OTTHUMG00000165738 11 11p15.4 olfactory receptor, family 10, subfamily A, member 5 protein-coding OR10A5 olfactory receptor, family 10, subfamily A, member 5 O HP3|olfactory receptor 10A1|olfactory receptor 10A5|olfactory receptor 11-403|olfactory receptor OR11-85|olfactory receptor, family 10, subfamily A, member 1|olfactory receptor-like protein JCG6 20121230 -9606 144125 OR2AG1 - OR11-79|OR2AG3 HGNC:15142|Ensembl:ENSG00000170803|HPRD:14935|Vega:OTTHUMG00000165735 11 11p15.4 olfactory receptor, family 2, subfamily AG, member 1 protein-coding OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 O hT3 olfactory receptor|olfactory receptor 2AG1|olfactory receptor 2AG3|olfactory receptor OR11-79|olfactory receptor, family 2, subfamily AG, member 3 20121230 -9606 144132 DNHD1 UNQ5781/PRO12970 C11orf47|CCDC35|DHCD1|DNHD1L HGNC:26532|Ensembl:ENSG00000179532|HPRD:08137|Vega:OTTHUMG00000133403 11 11p15.4 dynein heavy chain domain 1 protein-coding DNHD1 dynein heavy chain domain 1 O DNHD1 variant protein|coiled-coil domain containing 35|dynein heavy chain domain 1-like protein|dynein heavy chain domain-containing protein 1 20121230 -9606 144165 PRICKLE1 - EPM1B|RILP HGNC:17019|MIM:608500|Ensembl:ENSG00000139174|HPRD:16341|Vega:OTTHUMG00000169443 12 12q12 prickle homolog 1 (Drosophila) protein-coding PRICKLE1 prickle homolog 1 (Drosophila) O REST (RE-1 silencing transcription factor)/NRSF (neuron-restrictive silencer factor)-interacting LIM domain protein|REST/NRSF-interacting LIM domain protein 1|prickle-like 1|prickle-like protein 1 20121230 -9606 144193 AMDHD1 HMFT1272 - HGNC:28577|Ensembl:ENSG00000139344|HPRD:14605|Vega:OTTHUMG00000170353 12 12q23.1 amidohydrolase domain containing 1 protein-coding AMDHD1 amidohydrolase domain containing 1 O amidohydrolase domain-containing protein 1|probable imidazolonepropionase 20121230 -9606 144195 SLC2A14 - GLUT14|SLC2A3P3 HGNC:18301|MIM:611039|Ensembl:ENSG00000173262|HPRD:11573|Vega:OTTHUMG00000168463 12 12p13.31 solute carrier family 2 (facilitated glucose transporter), member 14 protein-coding SLC2A14 solute carrier family 2 (facilitated glucose transporter), member 14 O GLUT-14|glucose transporter 14|glucose transporter type 14|solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 3|solute carrier family 2, facilitated glucose transporter member 14 20121230 -9606 144203 OVOS2 - - - 12 12p11.21 ovostatin 2 protein-coding - - - ovostatin homolog 2 20121230 -9606 144233 BCDIN3D - - HGNC:27050|Ensembl:ENSG00000186666|HPRD:14065|Vega:OTTHUMG00000169807 12 12q13.12 BCDIN3 domain containing protein-coding BCDIN3D BCDIN3 domain containing O BCDIN3 domain-containing protein|probable methyltransferase BCDIN3D 20121230 -9606 144245 ALG10B - ALG10|KCR1 HGNC:31088|Ensembl:ENSG00000175548|HPRD:11923|Vega:OTTHUMG00000169298 12 12q12 asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast) protein-coding ALG10B asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast) O alpha-1,2-glucosyltransferase ALG10-A|alpha-2-glucosyltransferase ALG10-B|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)|asparagine-linked glycosylation protein 10 homolog B|modifier of the HERG potassium channel|potassium channel regulator 1|putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase|putative alpha-1,2-glucosyltransferase ALG10-B 20121230 -9606 144321 GLIPR1L2 - - HGNC:28592|MIM:610394|Ensembl:ENSG00000180481|HPRD:17538|Vega:OTTHUMG00000169756 12 12q21.2 GLI pathogenesis-related 1 like 2 protein-coding GLIPR1L2 GLI pathogenesis-related 1 like 2 O GLIPR1-like protein 2 20121230 -9606 144347 FAM101A - - HGNC:27051|Ensembl:ENSG00000178882|HPRD:14066|Vega:OTTHUMG00000168609 12 12q24.31 family with sequence similarity 101, member A protein-coding FAM101A family with sequence similarity 101, member A O protein FAM101A 20121230 -9606 144348 ZNF664 - ZFOC1|ZNF176 HGNC:25406|Ensembl:ENSG00000179195|HPRD:15723|Vega:OTTHUMG00000168596 12 12q24.31 zinc finger protein 664 protein-coding ZNF664 zinc finger protein 664 O zinc finger Organ of Corti 1|zinc finger protein 176|zinc finger protein from organ of Corti 20121230 -9606 144360 LINC00477 - C12orf67|FAM191B HGNC:26557|HPRD:08738 12 12p12.1 long intergenic non-protein coding RNA 477 miscRNA LINC00477 long intergenic non-protein coding RNA 477 O - 20121230 -9606 144363 LYRM5 - - HGNC:27052|Ensembl:ENSG00000205707|HPRD:14067|Vega:OTTHUMG00000171190 12 12p12.1 LYR motif containing 5 protein-coding LYRM5 LYR motif containing 5 O LYR motif-containing protein 5 20121230 -9606 144383 LOC144383 - - - 12 12p11.21 interferon induced transmembrane protein 3 pseudogene pseudo - - - - 20121230 -9606 144402 CPNE8 - - HGNC:23498|Ensembl:ENSG00000139117|HPRD:16747|Vega:OTTHUMG00000169396 12 12q12 copine VIII protein-coding CPNE8 copine VIII O copine-8 20121230 -9606 144404 TMEM120B - - HGNC:32008|Ensembl:ENSG00000188735|Vega:OTTHUMG00000169076 12 12q24.31 transmembrane protein 120B protein-coding TMEM120B transmembrane protein 120B O - 20121230 -9606 144406 WDR66 - - HGNC:28506|Ensembl:ENSG00000158023|HPRD:14570|Vega:OTTHUMG00000168948 12 12q24.31 WD repeat domain 66 protein-coding WDR66 WD repeat domain 66 O WD repeat-containing protein 66 20121230 -9606 144423 GLT1D1 - - HGNC:26483|Ensembl:ENSG00000151948|HPRD:08115|Vega:OTTHUMG00000168437 12 12q24.33 glycosyltransferase 1 domain containing 1 protein-coding GLT1D1 glycosyltransferase 1 domain containing 1 O glycosyltransferase 1 domain-containing protein 1 20121230 -9606 144448 TSPAN19 - - HGNC:31886|Ensembl:ENSG00000231738|Vega:OTTHUMG00000166181 12 12q21.31 tetraspanin 19 protein-coding TSPAN19 tetraspanin 19 O putative tetraspanin-19|tspan-19 20121230 -9606 144453 BEST3 - VMD2L3 HGNC:17105|MIM:607337|Ensembl:ENSG00000127325|HPRD:17484|Vega:OTTHUMG00000149919 12 12q14.2-q15 bestrophin 3 protein-coding BEST3 bestrophin 3 O bestrophin-3|vitelliform macular dystrophy 2-like 3|vitelliform macular dystrophy 2-like protein 3 20121230 -9606 144455 E2F7 - - HGNC:23820|MIM:612046|Ensembl:ENSG00000165891|HPRD:10929|Vega:OTTHUMG00000169969 12 12q21.2 E2F transcription factor 7 protein-coding E2F7 E2F transcription factor 7 O E2F-7|transcription factor E2F7 20121230 -9606 144481 SOCS2-AS1 - - HGNC:27054 12 12q22 SOCS2 antisense RNA 1 miscRNA SOCS2-AS1 SOCS2 antisense RNA 1 O - 20121230 -9606 144486 LOC144486 - - - 12 12q22 uncharacterized LOC144486 miscRNA - - - - 20121230 -9606 144501 KRT80 - KB20 HGNC:27056|MIM:611161|Ensembl:ENSG00000167767|HPRD:14068|Vega:OTTHUMG00000150193 12 12q13.13 keratin 80 protein-coding KRT80 keratin 80 O CK-80|K80|cytokeratin-80|keratin b20|keratin, type II cytoskeletal 80|keratin-80|type II keratin|type-II keratin Kb20 20121230 -9606 144535 C12orf55 - - HGNC:26456 12 12q23.1 chromosome 12 open reading frame 55 protein-coding C12orf55 chromosome 12 open reading frame 55 O uncharacterized protein C12orf55 20121230 -9606 144568 A2ML1 - CPAMD9 HGNC:23336|MIM:610627|Ensembl:ENSG00000166535|HPRD:08684|Vega:OTTHUMG00000128499 12 12p13.31 alpha-2-macroglobulin-like 1 protein-coding A2ML1 alpha-2-macroglobulin-like 1 O C3 and PZP-like, alpha-2-macroglobulin domain containing 9|alpha-2-macroglobulin-like protein 1 20121230 -9606 144571 A2M-AS1 - - HGNC:27057 12 12p13.31 A2M antisense RNA 1 miscRNA A2M-AS1 A2M antisense RNA 1 O - 20121230 -9606 144577 C12orf66 - - HGNC:26517|Ensembl:ENSG00000174206|HPRD:08727|Vega:OTTHUMG00000168763 12 12q14.2 chromosome 12 open reading frame 66 protein-coding C12orf66 chromosome 12 open reading frame 66 O UPF0536 protein C12orf66 20121230 -9606 144581 RPL14P1 - RPL14L|RPL14_1_1246|bcm1298 HGNC:31384 12 12q14.2 ribosomal protein L14 pseudogene 1 pseudo RPL14P1 ribosomal protein L14 pseudogene 1 O - 20121230 -9606 144608 C12orf60 - - HGNC:28726|Ensembl:ENSG00000182993|HPRD:11358|Vega:OTTHUMG00000167473 12 12p12.3 chromosome 12 open reading frame 60 protein-coding C12orf60 chromosome 12 open reading frame 60 O uncharacterized protein C12orf60 20121230 -9606 144638 ST13P3 - FAM10A3|FAM10A3P HGNC:18552 12 12q23.3 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3 pseudo ST13P3 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3 O - 20121230 -9606 144699 FBXL14 - Fbl14 HGNC:28624|MIM:609081|Ensembl:ENSG00000171823|HPRD:10949|Vega:OTTHUMG00000090369 12 12p13.33 F-box and leucine-rich repeat protein 14 protein-coding FBXL14 F-box and leucine-rich repeat protein 14 O F-box/LRR-repeat protein 14 20121230 -9606 144712 HMGA1P3 - HMGA1L3|HMGIYL3 HGNC:13323 12 12q24.11 high mobility group AT-hook 1 pseudogene 3 pseudo HMGA1P3 high mobility group AT-hook 1 pseudogene 3 O - 20121230 -9606 144715 RAD9B - - HGNC:21700|MIM:608368|Ensembl:ENSG00000151164|Vega:OTTHUMG00000152952 12 12q24.11 RAD9 homolog B (S. pombe) protein-coding RAD9B RAD9 homolog B (S. pombe) O DNA repair exonuclease rad9 homolog B|cell cycle checkpoint control protein RAD9B|cell cycle checkpoint control protein RAD9B homolog|hRAD9B 20121230 -9606 144717 FAM109A - IPIP27A|SES1 HGNC:26509|MIM:614239|Ensembl:ENSG00000198324|HPRD:08127|Vega:OTTHUMG00000169547 12 12q24.12 family with sequence similarity 109, member A protein-coding FAM109A family with sequence similarity 109, member A O 27 kDa inositol polyphosphate phosphatase-interacting protein A|protein FAM109A|sesquipedalian-1 20121230 -9606 144742 LOC144742 - - - 12 12q24.23 uncharacterized LOC144742 miscRNA - - - - 20121230 -9606 144766 LINC00355 - - HGNC:27061 13 13q21.31 long intergenic non-protein coding RNA 355 unknown LINC00355 long intergenic non-protein coding RNA 355 O - 20121021 -9606 144776 LINC00410 hCG_2038428 - HGNC:42742 13 13q31.3 long intergenic non-protein coding RNA 410 miscRNA LINC00410 long intergenic non-protein coding RNA 410 O - 20121230 -9606 144809 FAM216B RP11-366O17.1 C13orf30 HGNC:26883|Ensembl:ENSG00000179813|HPRD:08289|Vega:OTTHUMG00000016809 13 13q14.11 family with sequence similarity 216, member B protein-coding FAM216B family with sequence similarity 216, member B O protein FAM216B|uncharacterized protein C13orf30 20121230 -9606 144811 LACC1 RP11-5G9.2 C13orf31 HGNC:26789|MIM:613409|Ensembl:ENSG00000179630|HPRD:08793|Vega:OTTHUMG00000016826 13 13q14.11 laccase (multicopper oxidoreductase) domain containing 1 protein-coding LACC1 laccase (multicopper oxidoreductase) domain containing 1 O laccase domain-containing protein 1 20121230 -9606 144817 LINC00330 - NCRNA00330 HGNC:42047 13 13q14.11 long intergenic non-protein coding RNA 330 miscRNA LINC00330 long intergenic non-protein coding RNA 330 O - 20121230 -9606 144832 ESRRAP2 - ESTRRA HGNC:24647 13 13q12.11 estrogen-related receptor alpha pseudogene 2 pseudo ESRRAP2 estrogen-related receptor alpha pseudogene 2 O - 20121230 -9606 144847 ESRRAP1 - ESRRAP|bA76K19.2 HGNC:3472 13 13q12.1 estrogen-related receptor alpha pseudogene 1 pseudo ESRRAP1 estrogen-related receptor alpha pseudogene 1 O - 20121230 -9606 144920 LINC00343 - NCRNA00343 HGNC:42500 13 13q33.2 long intergenic non-protein coding RNA 343 miscRNA LINC00343 long intergenic non-protein coding RNA 343 O - 20121230 -9606 144983 HNRNPA1L2 RP11-78J21.1 - HGNC:27067|Ensembl:ENSG00000139675|HPRD:17300 13 13q14.3 heterogeneous nuclear ribonucleoprotein A1-like 2 protein-coding HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 O hnRNP A1-like 2|hnRNP core protein A1-like 2 20121230 -9606 145165 ST13P4 - FAM10A4|FAM10A4P HGNC:18487 13 13q14.3 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 pseudo ST13P4 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 O - 20121230 -9606 145173 B3GALTL RP11-367C11.1 B3GLCT|B3GTL|B3Glc-T|Gal-T|beta3Glc-T HGNC:20207|MIM:610308|Ensembl:ENSG00000187676|HPRD:12513|Vega:OTTHUMG00000016688 13 13q12.3 beta 1,3-galactosyltransferase-like protein-coding B3GALTL beta 1,3-galactosyltransferase-like O UDP-GAL:beta-GlcNAc beta-1,3-galactosyltransferase-like|beta 3-glycosyltransferase-like|beta-1,3-glucosyltransferase|beta-3-glycosyltransferase-like 20121230 -9606 145195 C14orf144 - - HGNC:20358 14 14q32.33 chromosome 14 open reading frame 144 unknown C14orf144 chromosome 14 open reading frame 144 O - 20121021 -9606 145200 LINC00239 hCG_1814227 C14orf72|NCRNA00239 HGNC:20119 14 14q32.31 long intergenic non-protein coding RNA 239 miscRNA LINC00239 long intergenic non-protein coding RNA 239 O - 20121230 -9606 145216 LINC00637 - - HGNC:27069 14 14q32.33 long intergenic non-protein coding RNA 637 miscRNA LINC00637 long intergenic non-protein coding RNA 637 O - 20121230 -9606 145226 RDH12 - LCA13|LCA3|SDR7C2 HGNC:19977|MIM:608830|Ensembl:ENSG00000139988|HPRD:10585|Vega:OTTHUMG00000170032 14 14q24.1 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) protein-coding RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) O all-trans and 9-cis retinol dehydrogenase|retinol dehydrogenase 12|retinol dehydrogenase 12, all-trans and 9-cis|short chain dehydrogenase/reductase family 7C, member 2 20121230 -9606 145235 RPL24P3 - RPL24_2_1385 HGNC:19784 14 14q24.1 ribosomal protein L24 pseudogene 3 pseudo RPL24P3 ribosomal protein L24 pseudogene 3 O - 20121230 -9606 145241 ADAM21P1 - ADAM21P HGNC:19822 14 14q24.2 ADAM metallopeptidase domain 21 pseudogene 1 pseudo ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 O - 20121230 -9606 145249 LINC00618 - C14orf63 HGNC:20110 14 14q32.31 long intergenic non-protein coding RNA 618 miscRNA LINC00618 long intergenic non-protein coding RNA 618 O - 20121110 -9606 145258 GSC - - HGNC:4612|MIM:138890|Ensembl:ENSG00000133937|HPRD:15928|Vega:OTTHUMG00000170864 14 14q32.1 goosecoid homeobox protein-coding GSC goosecoid homeobox O homeobox protein goosecoid 20121230 -9606 145259 RPSAP4 - LAMR1P4|RPSA_27_1403 HGNC:20018 14 14q32.13 ribosomal protein SA pseudogene 4 pseudo RPSAP4 ribosomal protein SA pseudogene 4 O - 20121230 -9606 145264 SERPINA12 - OL-64 HGNC:18359|Ensembl:ENSG00000165953|HPRD:18038|Vega:OTTHUMG00000171349 14 14q32.13 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 protein-coding SERPINA12 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 O serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12|serpin A12|vaspin|visceral adipose tissue-derived serine protease inhibitor|visceral adipose-specific SERPIN 20121230 -9606 145270 PRIMA1 - PRIMA HGNC:18319|MIM:613851|Ensembl:ENSG00000175785|HPRD:17907|Vega:OTTHUMG00000141313 14 14q32.12 proline rich membrane anchor 1 protein-coding PRIMA1 proline rich membrane anchor 1 O acetylcholinesterase membrane anchor precursor PRiMA|proline-rich membrane anchor 1 20121230 -9606 145282 MIPOL1 - - HGNC:21460|MIM:606850|Ensembl:ENSG00000151338|HPRD:06029|Vega:OTTHUMG00000140252 14 14q13.3 mirror-image polydactyly 1 protein-coding MIPOL1 mirror-image polydactyly 1 O mirror-image polydactyly gene 1 protein 20121230 -9606 145370 RPL21P7 hCG_2028654 - HGNC:19772 14 14q23.3 ribosomal protein L21 pseudogene 7 pseudo RPL21P7 ribosomal protein L21 pseudogene 7 O - 20121230 -9606 145375 NUP50P1 - NUP50P HGNC:20025 14 14q23.3 nucleoporin 50 pseudogene 1 pseudo NUP50P1 nucleoporin 50 pseudogene 1 O - 20121230 -9606 145376 PPP1R36 - C14orf50 HGNC:20097|Ensembl:ENSG00000165807|HPRD:08505|Vega:OTTHUMG00000141316 14 14q23.3 protein phosphatase 1, regulatory subunit 36 protein-coding PPP1R36 protein phosphatase 1, regulatory subunit 36 O protein phosphatase 1 regulatory subunit 36 20121230 -9606 145389 SLC38A6 - NAT-1 HGNC:19863|Ensembl:ENSG00000139974|HPRD:15382|Vega:OTTHUMG00000140335 14 14q23.1 solute carrier family 38, member 6 protein-coding SLC38A6 solute carrier family 38, member 6 O N system amino acid transporter NAT-1|N-system amino acid transporter 1|Na(+)-coupled neutral amino acid transporter 6|probable sodium-coupled neutral amino acid transporter 6 20121230 -9606 145407 C14orf37 - c14_5376 HGNC:19846|Ensembl:ENSG00000139971|HPRD:10712|Vega:OTTHUMG00000171173 14 14q23.1 chromosome 14 open reading frame 37 protein-coding C14orf37 chromosome 14 open reading frame 37 O uncharacterized protein C14orf37 20121230 -9606 145438 FRMD6-AS1 hCG_2013199 C14orf82 HGNC:20129 14 14q22.1 FRMD6 antisense RNA 1 miscRNA FRMD6-AS1 FRMD6 antisense RNA 1 O - 20121230 -9606 145447 ABHD12B - BEM46L3|C14orf29|c14_5314 HGNC:19837|Ensembl:ENSG00000131969|Vega:OTTHUMG00000140286 14 14q22.1 abhydrolase domain containing 12B protein-coding ABHD12B abhydrolase domain containing 12B O abhydrolase domain-containing protein 12B 20121230 -9606 145474 LOC145474 - - - 14 14q24.2 uncharacterized LOC145474 miscRNA - - - - 20121230 -9606 145482 PTGR2 - PGR2|ZADH1 HGNC:20149|MIM:608642|Ensembl:ENSG00000140043|Ensembl:ENSG00000258653|HPRD:09782|Vega:OTTHUMG00000171255|Vega:OTTHUMG00000171256 14 14q24.3 prostaglandin reductase 2 protein-coding PTGR2 prostaglandin reductase 2 O 15-oxoprostaglandin 13-reductase|15-oxoprostaglandin-delta13-reductase|PRG-2|zinc binding alcohol dehydrogenase, domain containing 1|zinc-binding alcohol dehydrogenase domain-containing protein 1 20121230 -9606 145483 FAM161B - C14orf44|c14_5547 HGNC:19854|Ensembl:ENSG00000156050|HPRD:12649|Vega:OTTHUMG00000171259 14 14q24.3 family with sequence similarity 161, member B protein-coding FAM161B family with sequence similarity 161, member B O protein FAM161B 20121230 -9606 145497 C14orf166B - - HGNC:23346|Ensembl:ENSG00000100565|HPRD:12621|Vega:OTTHUMG00000150153 14 14q24.3 chromosome 14 open reading frame 166B protein-coding C14orf166B chromosome 14 open reading frame 166B O uncharacterized protein C14orf166B 20121230 -9606 145499 RPLP1P1 - RPLP1_4_1394 HGNC:19793 14 14q24.3 ribosomal protein, large, P1 pseudogene 1 pseudo RPLP1P1 ribosomal protein, large, P1 pseudogene 1 O - 20121230 -9606 145501 ISM2 PSEC0137 TAIL1|THSD3 HGNC:23176|MIM:612684|Ensembl:ENSG00000100593|HPRD:18182|Vega:OTTHUMG00000158563 14 14q24.3 isthmin 2 homolog (zebrafish) protein-coding ISM2 isthmin 2 homolog (zebrafish) O isthmin-2|thrombospondin and AMOP containing isthmin-like 1|thrombospondin and AMOP domain-containing isthmin-like protein 1|thrombospondin type-1 domain-containing protein 3|thrombospondin, type I domain-containing 3|thrombospondin, type I, domain containing 3 20121230 -9606 145508 CEP128 - C14orf145|C14orf61|LEDP/132 HGNC:20359|Ensembl:ENSG00000100629|HPRD:09834|Vega:OTTHUMG00000171442 14 14q31.1 centrosomal protein 128kDa protein-coding CEP128 centrosomal protein 128kDa O centrosomal protein of 128 kDa|lens epithelium-derived protein 20121230 -9606 145553 MDP1 - FN6PASE|MDP-1 HGNC:28781|Ensembl:ENSG00000213920|HPRD:14695|Vega:OTTHUMG00000133477 14 14q12 magnesium-dependent phosphatase 1 protein-coding MDP1 magnesium-dependent phosphatase 1 O fructosamine-6-phosphatase 20121230 -9606 145567 TTC7B - TTC7L1|c14_5685 HGNC:19858|Ensembl:ENSG00000165914|HPRD:18503|Vega:OTTHUMG00000171047 14 14q32.11 tetratricopeptide repeat domain 7B protein-coding TTC7B tetratricopeptide repeat domain 7B O TPR repeat protein 7-like-1|TPR repeat protein 7B|tetratricopeptide repeat domain 7 like 1|tetratricopeptide repeat protein 7-like-1|tetratricopeptide repeat protein 7B 20121230 -9606 145581 LRFN5 - C14orf146|FIGLER8|SALM5 HGNC:20360|MIM:612811|Ensembl:ENSG00000165379|HPRD:17445|Vega:OTTHUMG00000140261 14 14q21.1 leucine rich repeat and fibronectin type III domain containing 5 protein-coding LRFN5 leucine rich repeat and fibronectin type III domain containing 5 O fibronectin type III, immunoglobulin and leucine rich repeat domains 8|leucine-rich repeat and fibronectin type-III domain-containing protein 5 20121230 -9606 145624 PAR1 - D15S227E MIM:600161 15 15q11.2 Prader-Willi/Angelman region-1 miscRNA - - - - 20121230 -9606 145645 C15orf43 - - HGNC:28520|Ensembl:ENSG00000167014|HPRD:17528|Vega:OTTHUMG00000131264 15 15q21.1 chromosome 15 open reading frame 43 protein-coding C15orf43 chromosome 15 open reading frame 43 O uncharacterized protein C15orf43 20121230 -9606 145663 GATM-AS1 - - HGNC:27073 15 15q15.1 GATM antisense RNA 1 miscRNA GATM-AS1 GATM antisense RNA 1 O - 20121230 -9606 145678 LOC145678 - - - 15 15q24.3 uncharacterized LOC145678 unknown - - - - 20120508 -9606 145694 LOC145694 - - - 15 15q22.31 uncharacterized LOC145694 unknown - - - - 20121230 -9606 145741 C2CD4A - FAM148A|NLF1 HGNC:33627|MIM:610343|Ensembl:ENSG00000198535|HPRD:14830|Vega:OTTHUMG00000171942 15 15q22.2 C2 calcium-dependent domain containing 4A protein-coding C2CD4A C2 calcium-dependent domain containing 4A O C2 calcium-dependent domain-containing protein 4A|family with sequence similarity 148, member A|nuclear localized factor 1|nuclear-localized factor 1 20121230 -9606 145748 LYSMD4 - - HGNC:26571|Ensembl:ENSG00000183060|HPRD:08153|Vega:OTTHUMG00000149853 15 15q26.3 LysM, putative peptidoglycan-binding, domain containing 4 protein-coding LYSMD4 LysM, putative peptidoglycan-binding, domain containing 4 O lysM and putative peptidoglycan-binding domain-containing protein 4 20121230 -9606 145757 LOC145757 - - HPRD:18728 15 15q26.3 uncharacterized LOC145757 unknown - - - - 20121230 -9606 145767 RPS3AP6 - RPS3A-like|RPS3A_20_1440 HGNC:18630 15 15q21.3 ribosomal protein S3A pseudogene 6 pseudo RPS3AP6 ribosomal protein S3A pseudogene 6 O - 20121230 -9606 145773 FAM81A - - HGNC:28379|Ensembl:ENSG00000157470|HPRD:14508|Vega:OTTHUMG00000171915 15 15q22.2 family with sequence similarity 81, member A protein-coding FAM81A family with sequence similarity 81, member A O protein FAM81A 20121230 -9606 145781 GCOM1 - GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom HGNC:26424|Ensembl:ENSG00000137878|HPRD:08091|Vega:OTTHUMG00000176411 15 15q21.3 GRINL1A complex locus 1 protein-coding GCOM1 GRINL1A complex locus 1 O GRINL1A combined protein|GRINL1A combined protein Gcom12|GRINL1A complex locus protein 1|MYZAP-POLR2M protein|MYZAP-POLR2M readthrough|NMDAR1 subunit-interacting protein|glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A combined protein|myocardial zonula adherens protein 20121230 -9606 145783 LOC145783 - - - 15 15q21.3 uncharacterized LOC145783 miscRNA - - - - 20121230 -9606 145788 FLJ27352 - - Ensembl:ENSG00000261652|Vega:OTTHUMG00000172679 15 15q21.3 uncharacterized LOC145788 protein-coding - - - uncharacterized protein LOC145788 20121230 -9606 145814 PGPEP1L - - HGNC:27080|Ensembl:ENSG00000183571|Vega:OTTHUMG00000171896 15 15q26.3 pyroglutamyl-peptidase I-like protein-coding PGPEP1L pyroglutamyl-peptidase I-like O pyroglutamyl-peptidase 1-like protein 20121230 -9606 145820 LOC145820 - - - 15 15q26.2 uncharacterized LOC145820 miscRNA - - - - 20121230 -9606 145837 LOC145837 - - - 15 15q23 uncharacterized LOC145837 miscRNA - - - - 20121230 -9606 145845 LOC145845 - - - 15 15q14 uncharacterized LOC145845 miscRNA - - - - 20121230 -9606 145853 C15orf61 - - HGNC:34453|Ensembl:ENSG00000189227|Vega:OTTHUMG00000172248 15 15q23 chromosome 15 open reading frame 61 protein-coding C15orf61 chromosome 15 open reading frame 61 O uncharacterized protein C15orf61 20121230 -9606 145858 C15orf32 - - HGNC:26549|Ensembl:ENSG00000183643|HPRD:08143|Vega:OTTHUMG00000149844 15 15q26.1 chromosome 15 open reading frame 32 protein-coding C15orf32 chromosome 15 open reading frame 32 O uncharacterized protein C15orf32 20121230 -9606 145864 HAPLN3 UNQ238/PRO271 EXLD1|HsT19883 HGNC:21446|Ensembl:ENSG00000140511|HPRD:13629|Vega:OTTHUMG00000148680 15 15q26.1 hyaluronan and proteoglycan link protein 3 protein-coding HAPLN3 hyaluronan and proteoglycan link protein 3 O extracellular link domain containing, 1 20121230 -9606 145873 MESP2 - SCDO2|bHLHc6 HGNC:29659|MIM:605195|Ensembl:ENSG00000188095|Vega:OTTHUMG00000172016 15 15q26.1 mesoderm posterior 2 homolog (mouse) protein-coding MESP2 mesoderm posterior 2 homolog (mouse) O class C basic helix-loop-helix protein 6|mesoderm posterior protein 2 20121230 -9606 145942 TMCO5A - TMCO5 HGNC:28558|Ensembl:ENSG00000166069|HPRD:11341|Vega:OTTHUMG00000129787 15 15q14 transmembrane and coiled-coil domains 5A protein-coding TMCO5A transmembrane and coiled-coil domains 5A O transmembrane and coiled-coil domain-containing protein 5A|transmembrane and coiled-coil domains 5 20121230 -9606 145945 LOC145945 - - - 15 15q26.2 uncharacterized LOC145945 unknown - - - - 20120508 -9606 145946 SPATA8 - SRG8 HGNC:28676|MIM:613948|Ensembl:ENSG00000185594|HPRD:15432|Vega:OTTHUMG00000149847 15 15q26.2 spermatogenesis associated 8 protein-coding SPATA8 spermatogenesis associated 8 O spermatogenesis-associated protein 8|spermatogenesis-related protein 8 20121230 -9606 145957 NRG4 - HRG4 HGNC:29862|MIM:610894|Ensembl:ENSG00000169752|HPRD:14871|Vega:OTTHUMG00000142917 15 15q24.2 neuregulin 4 protein-coding NRG4 neuregulin 4 O heregulin 4|pro-NRG4|pro-neuregulin-4, membrane-bound isoform 20121230 -9606 145978 LINC00052 - NCRNA00052|TMEM83 HGNC:26455|HPRD:08101 15 15q25.3 long intergenic non-protein coding RNA 52 miscRNA LINC00052 long intergenic non-protein coding RNA 52 O - 20121230 -9606 145989 LOC145989 - - - 15 15q14 fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) pseudogene pseudo - - - - 20121230 -9606 146050 ZSCAN29 - ZNF690|Zfp690 HGNC:26673|Ensembl:ENSG00000140265|HPRD:08766|Vega:OTTHUMG00000130767 15 15q15.3 zinc finger and SCAN domain containing 29 protein-coding ZSCAN29 zinc finger and SCAN domain containing 29 O KOX31-like zinc finger protein|zinc finger and SCAN domain-containing protein 29|zinc finger protein 690 20121230 -9606 146053 RPS3AP47 - RPS3A_22_1428 HGNC:36744 15 15q15.2 ribosomal protein S3a pseudogene 47 pseudo RPS3AP47 ribosomal protein S3a pseudogene 47 O - 20121230 -9606 146057 TTBK2 - SCA11|TTBK HGNC:19141|MIM:611695|Ensembl:ENSG00000128881|HPRD:10288|Vega:OTTHUMG00000175802 15 15q15.2 tau tubulin kinase 2 protein-coding TTBK2 tau tubulin kinase 2 O tau-tubulin kinase 2 20121230 -9606 146059 CDAN1 UNQ664/PRO1295 CDA1|CDAI|DLT|PRO1295 HGNC:1713|MIM:607465|Ensembl:ENSG00000140326|HPRD:08470|Vega:OTTHUMG00000175801 15 15q15.2 codanin 1 protein-coding CDAN1 codanin 1 O codanin-1|congenital dyserythropoietic anemia, type I|discs lost homolog 20121230 -9606 146110 RPL7P47 - RPL7_27_1478 HGNC:35913 16 16p12.3 ribosomal protein L7 pseudogene 47 pseudo RPL7P47 ribosomal protein L7 pseudogene 47 O - 20121230 -9606 146167 SLC38A8 - - HGNC:32434|Ensembl:ENSG00000166558|Vega:OTTHUMG00000176588 16 16q23.3 solute carrier family 38, member 8 protein-coding SLC38A8 solute carrier family 38, member 8 O putative sodium-coupled neutral amino acid transporter 8 20121230 -9606 146177 VWA3A hCG_2039627 - HGNC:27088|Ensembl:ENSG00000175267|Vega:OTTHUMG00000175461 16 16p12.2 von Willebrand factor A domain containing 3A protein-coding VWA3A von Willebrand factor A domain containing 3A O von Willebrand factor A domain-containing protein 3A 20121230 -9606 146183 OTOA - CT108|DFNB22 HGNC:16378|MIM:607038|Ensembl:ENSG00000155719|HPRD:06126|Vega:OTTHUMG00000090721 16 16p12.2|16p12.2 otoancorin protein-coding OTOA otoancorin O cancer/testis antigen 108 20121230 -9606 146198 ZFP90 - NK10|ZNF756 HGNC:23329|MIM:609451|Ensembl:ENSG00000184939|HPRD:18729|Vega:OTTHUMG00000177312 16 16q22.1 ZFP90 zinc finger protein protein-coding ZFP90 ZFP90 zinc finger protein O zfp-90|zinc finger protein 476|zinc finger protein 756|zinc finger protein 90 homolog 20121230 -9606 146206 RLTPR - CARMIL2|CARMIL2b|LRRC16C HGNC:27089|MIM:610859|Ensembl:ENSG00000159753|HPRD:18556 16 16q22.1 RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing protein-coding RLTPR RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing O RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein|RGD, leucine-rich repeat, tropomodulin and proline-rich-containing protein|leucine rich repeat containing 16C|leucine-rich repeat-containing protein 16C 20121230 -9606 146212 KCTD19 - - HGNC:24753|Ensembl:ENSG00000168676|Vega:OTTHUMG00000173075 16 16q22.1 potassium channel tetramerisation domain containing 19 protein-coding KCTD19 potassium channel tetramerisation domain containing 19 O BTB/POZ domain-containing protein KCTD19 20121230 -9606 146223 CMTM4 - CKLFSF4 HGNC:19175|MIM:607887|Ensembl:ENSG00000183723|HPRD:07435|Vega:OTTHUMG00000137500 16 16q21-q22.1 CKLF-like MARVEL transmembrane domain containing 4 protein-coding CMTM4 CKLF-like MARVEL transmembrane domain containing 4 O CKLF-like MARVEL transmembrane domain-containing protein 4|chemokine-like factor super family 4|chemokine-like factor superfamily member 4 20121230 -9606 146225 CMTM2 - CKLFSF2 HGNC:19173|MIM:607885|Ensembl:ENSG00000140932|HPRD:07434|Vega:OTTHUMG00000137501 16 16q21 CKLF-like MARVEL transmembrane domain containing 2 protein-coding CMTM2 CKLF-like MARVEL transmembrane domain containing 2 O CKLF-like MARVEL transmembrane domain-containing protein 2|chemokine-like factor superfamily 2|chemokine-like factor superfamily member 2 20121230 -9606 146227 BEAN1 - BEAN|SCA31 HGNC:24160|MIM:612051|Ensembl:ENSG00000166546|Vega:OTTHUMG00000173370 16 16q21 brain expressed, associated with NEDD4, 1 protein-coding BEAN1 brain expressed, associated with NEDD4, 1 O brain-expressed protein associating with Nedd4 homolog|protein BEAN1 20121230 -9606 146253 LOC146253 - - - 16 16q12.2 tropomyosin-like pseudo - - - - 20121230 -9606 146279 TEKT5 - - HGNC:26554|Ensembl:ENSG00000153060|HPRD:08736|Vega:OTTHUMG00000129750 16 16p13.13 tektin 5 protein-coding TEKT5 tektin 5 O tektin-5 20121230 -9606 146310 RNF151 - - HGNC:23235|Ensembl:ENSG00000179580|Vega:OTTHUMG00000176852 16 16p13.3 ring finger protein 151 protein-coding RNF151 ring finger protein 151 O RING finger protein 151 20121230 -9606 146325 C16orf11 LA16c-366D1.2 - HGNC:14139|Ensembl:ENSG00000161992|HPRD:10046|Vega:OTTHUMG00000154104 16 16p13.3 chromosome 16 open reading frame 11 protein-coding C16orf11 chromosome 16 open reading frame 11 O uncharacterized protein C16orf11|uncharacterized protein RJD1 20121230 -9606 146330 FBXL16 - C16orf22|Fbl16|c380A1.1 HGNC:14150|MIM:609082|Ensembl:ENSG00000127585|HPRD:12365|Vega:OTTHUMG00000090420 16 16p13.3 F-box and leucine-rich repeat protein 16 protein-coding FBXL16 F-box and leucine-rich repeat protein 16 O F-box/LRR-repeat protein 16|c380A1.1 (novel protein) 20121230 -9606 146336 SSTR5-AS1 - - HGNC:26502|HPRD:08125 16 16p13.3 SSTR5 antisense RNA 1 miscRNA SSTR5-AS1 SSTR5 antisense RNA 1 O - 20121230 -9606 146378 C16orf92 - - HGNC:26346|Ensembl:ENSG00000167194|Vega:OTTHUMG00000177107 16 16p11.2 chromosome 16 open reading frame 92 protein-coding C16orf92 chromosome 16 open reading frame 92 O uncharacterized protein C16orf92 20121230 -9606 146395 GSG1L UNQ5831 PRO19651 HGNC:28283|Ensembl:ENSG00000169181|HPRD:14464|Vega:OTTHUMG00000131676 16 16p12.1 GSG1-like protein-coding GSG1L GSG1-like O GSG1-like protein|KTSR5831|germ cell-specific gene 1-like protein 20121230 -9606 146429 SLC22A31 - - HGNC:27091 16 16q24.3 solute carrier family 22, member 31 protein-coding SLC22A31 solute carrier family 22, member 31 O putative solute carrier family 22 member 31|putative solute carrier family 22 member ENSG00000182157 20121230 -9606 146433 IL34 - C16orf77|IL-34 HGNC:28529|MIM:612081|Ensembl:ENSG00000157368|HPRD:14582|Vega:OTTHUMG00000137581 16 16q22.1 interleukin 34 protein-coding IL34 interleukin 34 O interleukin-34 20121230 -9606 146434 ZNF597 - - HGNC:26573|MIM:614685|Ensembl:ENSG00000167981|HPRD:15869|Vega:OTTHUMG00000129359 16 16p13.3 zinc finger protein 597 protein-coding ZNF597 zinc finger protein 597 O - 20121230 -9606 146439 CCDC64B - BICDR-2 HGNC:33584|Ensembl:ENSG00000162069|Vega:OTTHUMG00000177452 16 16p13.3 coiled-coil domain containing 64B protein-coding CCDC64B coiled-coil domain containing 64B O BICD-related protein 2|bicaudal D-related protein 2|coiled-coil domain-containing protein 64B 20121230 -9606 146456 TMED6 UNQ9146/PRO34237 PRO34237|SPLL9146 HGNC:28331|Ensembl:ENSG00000157315|HPRD:15520|Vega:OTTHUMG00000137571 16 16q22.1 transmembrane emp24 protein transport domain containing 6 protein-coding TMED6 transmembrane emp24 protein transport domain containing 6 O p24 family protein gamma-5|p24gamma5|transmembrane emp24 domain-containing protein 6 20121230 -9606 146481 LOC146481 - - - 16 16p11.1 FSHD region gene 2 family, member C pseudogene pseudo - - - - 20121230 -9606 146512 FLJ30679 - - - 16 16q24.1 uncharacterized protein FLJ30679 miscRNA - - - - 20121230 -9606 146513 LOC146513 - - - 16 16q24.1 uncharacterized LOC146513 miscRNA - - - - 20121230 -9606 146540 ZNF785 - - HGNC:26496|Ensembl:ENSG00000197162|HPRD:08120|Vega:OTTHUMG00000176950 16 16p11.2 zinc finger protein 785 protein-coding ZNF785 zinc finger protein 785 O - 20121230 -9606 146542 ZNF688 - - HGNC:30489|Ensembl:ENSG00000229809|HPRD:14070|Vega:OTTHUMG00000132408 16 16p11.2 zinc finger protein 688 protein-coding ZNF688 zinc finger protein 688 O - 20121230 -9606 146547 PRSS36 - - HGNC:26906|MIM:610560|Ensembl:ENSG00000178226|HPRD:07119|Vega:OTTHUMG00000176751 16 16p11.2 protease, serine, 36 protein-coding PRSS36 protease, serine, 36 O polyserase 2|polyserase-2|polyserine protease 2|polyserine protease-2|serine protease 36 20121230 -9606 146556 C16orf89 UNQ904/PRO1925 - HGNC:28687|Ensembl:ENSG00000153446|HPRD:11353|Vega:OTTHUMG00000159314 16 16p13.3 chromosome 16 open reading frame 89 protein-coding C16orf89 chromosome 16 open reading frame 89 O UPF0764 protein C16orf89 20121230 -9606 146562 C16orf71 - - HGNC:25081|Ensembl:ENSG00000166246|HPRD:11238|Vega:OTTHUMG00000129480 16 16p13.3 chromosome 16 open reading frame 71 protein-coding C16orf71 chromosome 16 open reading frame 71 O uncharacterized protein C16orf71 20121230 -9606 146664 MGAT5B - GnT-IX|GnT-VB HGNC:24140|MIM:612441|Ensembl:ENSG00000167889|HPRD:14392|Vega:OTTHUMG00000177278 17 17q25.2 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B protein-coding MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B O N-acetylglucosaminyl-transferase Vb|N-acetylglucosaminyltransferase IX|alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B|alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase B|beta(1,6)-N-acetylglucosaminyltransferase V|glcNAc-T Vb|hGnTVb|mannoside acetylglucosaminyltransferase 5B|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B 20121230 -9606 146691 TOM1L2 UNQ3124 - HGNC:11984|Ensembl:ENSG00000175662|HPRD:18213|Vega:OTTHUMG00000059353 17 17p11.2 target of myb1-like 2 (chicken) protein-coding TOM1L2 target of myb1-like 2 (chicken) O TOM1-like protein 2|target of Myb-like protein 2 20121230 -9606 146705 ENTHD2 - C17orf56 HGNC:26458|Ensembl:ENSG00000167302|HPRD:08103|Vega:OTTHUMG00000177866 17 17q25.3 ENTH domain containing 2 protein-coding ENTHD2 ENTH domain containing 2 O AP-4 complex accessory subunit tepsin|ENTH domain-containing protein 2|epsin for AP-4|tetra-epsin 20121230 -9606 146712 B3GNTL1 - B3GNT8 HGNC:21727|Ensembl:ENSG00000175711|HPRD:14071|HPRD:18527|Vega:OTTHUMG00000177788 17 17q25.3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 protein-coding B3GNTL1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 O BGnT-8|BGnT-like protein 1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1|beta-1,3-Gn-T8|beta-1,3-N-acetylglucosaminyltransferase 8|beta1,3-N-acetylglucosaminyltransferase-like protein 1|beta3Gn-T-like protein 1|beta3Gn-T8|beta3GnTL1 20121230 -9606 146713 RBFOX3 hCG_1776007 FOX-3|FOX3|HRNBP3|NEUN HGNC:27097|Ensembl:ENSG00000167281|HPRD:18730|Vega:OTTHUMG00000150183 17 17q25.3 RNA binding protein, fox-1 homolog (C. elegans) 3 protein-coding RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 O RNA binding protein fox-1 homolog 3|fox-1 homolog C|hexaribonucleotide binding protein 3|neuronal nuclei 20121230 -9606 146722 CD300LF UNQ3105/PRO10111 CD300f|CLM-1|CLM1|IREM-1|IREM1|IgSF13|NKIR HGNC:29883|MIM:609807|Ensembl:ENSG00000186074|HPRD:17635|Vega:OTTHUMG00000067609 17 17q25.1 CD300 molecule-like family member f protein-coding CD300LF CD300 molecule-like family member f O CD300 antigen like family member F|CD300 antigen-like family member F|CD300 molecule like family member f|CMRF35-like molecule 1|NK inhibitory receptor|immune receptor expressed on myeloid cells 1|immunoglobin superfamily member 13|immunoglobulin superfamily member 13|inhibitory receptor IREM1 20121230 -9606 146723 C17orf77 - - HGNC:26480|Ensembl:ENSG00000182352|HPRD:08112|Vega:OTTHUMG00000067611 17 17q25.1 chromosome 17 open reading frame 77 protein-coding C17orf77 chromosome 17 open reading frame 77 O uncharacterized protein C17orf77 20121230 -9606 146754 DNAH2 - DNAHC2|DNHD3 HGNC:2948|MIM:603333|Ensembl:ENSG00000183914|HPRD:17214|Vega:OTTHUMG00000178020 17 17p13.1 dynein, axonemal, heavy chain 2 protein-coding DNAH2 dynein, axonemal, heavy chain 2 O axonemal beta dynein heavy chain 2|ciliary dynein heavy chain 2|dynein heavy chain 2, axonemal|dynein heavy chain domain 3|dynein heavy chain domain-containing protein 3|dynein, axonemal, heavy chain-2|dynein, axonemal, heavy polypeptide 2 20121230 -9606 146760 RTN4RL1 - NGRH2|NgR3 HGNC:21329|MIM:610461|Ensembl:ENSG00000185924|HPRD:11523|Vega:OTTHUMG00000180184 17 17p13.3 reticulon 4 receptor-like 1 protein-coding RTN4RL1 reticulon 4 receptor-like 1 O Nogo-66 receptor homolog 2|Nogo-66 receptor-related protein 3|nogo receptor-like 2|reticulon-4 receptor-like 1 20121230 -9606 146771 TCAM1P - TCAM1 HGNC:30707|MIM:612756 17 17q23.3 testicular cell adhesion molecule 1, pseudogene pseudo TCAM1P testicular cell adhesion molecule 1, pseudogene O - 20121230 -9606 146779 EFCAB3 - - HGNC:26379|Ensembl:ENSG00000172421|HPRD:08077|Vega:OTTHUMG00000179175 17 17q23.2 EF-hand calcium binding domain 3 protein-coding EFCAB3 EF-hand calcium binding domain 3 O EF-hand calcium-binding domain-containing protein 3 20121230 -9606 146795 LOC146795 - - - 17 17q24.3 uncharacterized LOC146795 unknown - - - - 20120508 -9606 146802 SLC47A2 - MATE2|MATE2-B|MATE2-K|MATE2K HGNC:26439|MIM:609833|Ensembl:ENSG00000180638|HPRD:08710|Vega:OTTHUMG00000059464 17 17p11.2 solute carrier family 47, member 2 protein-coding SLC47A2 solute carrier family 47, member 2 O H+/organic cation antiporter|MATE-2|hMATE-2|kidney-specific H(+)/organic cation antiporter|multidrug and toxin extrusion 2|multidrug and toxin extrusion protein 2 20121230 -9606 146822 CDRT15 - - HGNC:14395|Ensembl:ENSG00000223510|HPRD:16700|Vega:OTTHUMG00000179686 17 17p12 CMT1A duplicated region transcript 15 protein-coding CDRT15 CMT1A duplicated region transcript 15 O CMT1A duplicated region transcript 15 protein 20121230 -9606 146845 WDR16 - WDRPUH HGNC:16053|MIM:609804|Ensembl:ENSG00000166596|HPRD:14072|Vega:OTTHUMG00000150149 17 17p13.1 WD repeat domain 16 protein-coding WDR16 WD repeat domain 16 O WD repeat-containing protein 16|WD40-repeat protein up-regulated in HCC|WD40-repeat protein upregulated in HCC 20121230 -9606 146849 CCDC42 - CCDC42A HGNC:26528|Ensembl:ENSG00000161973|HPRD:08731|Vega:OTTHUMG00000178565 17 17p13.1 coiled-coil domain containing 42 protein-coding CCDC42 coiled-coil domain containing 42 O coiled-coil domain-containing protein 42A 20121230 -9606 146850 PIK3R6 - C17orf38|HsT41028|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP HGNC:27101|MIM:611462|HPRD:12682 17 17p13.1 phosphoinositide-3-kinase, regulatory subunit 6 protein-coding PIK3R6 phosphoinositide-3-kinase, regulatory subunit 6 O PI3Kgamma adapter protein of 87 kDa|p84 PI3K adapter protein|p87 PI3K adapter protein|p87 phosphoinositide 3-kinase gamma (PI3Kg) adapter protein|phosphoinositide 3-kinase gamma adapter protein of 87 kDa|phosphoinositide 3-kinase regulatory subunit 6 20121230 -9606 146852 ODF4 - CT134|CT136|OPPO1 HGNC:19056|MIM:610097|Ensembl:ENSG00000184650|HPRD:17658|Vega:OTTHUMG00000108190 17 17p13.1 outer dense fiber of sperm tails 4 protein-coding ODF4 outer dense fiber of sperm tails 4 O cancer/testis antigen 134|cancer/testis antigen 136|hOPPO1|outer dense fiber 4|outer dense fiber of sperm tails protein 4|outer dense fiber protein 4|testis-specific protein oppo 1 20121230 -9606 146853 C17orf50 - - HGNC:29581|Ensembl:ENSG00000154768|HPRD:11239|Vega:OTTHUMG00000179971 17 17q12 chromosome 17 open reading frame 50 protein-coding C17orf50 chromosome 17 open reading frame 50 O uncharacterized protein C17orf50 20121230 -9606 146857 SLFN13 - SLFN10 HGNC:26481|MIM:614957|Ensembl:ENSG00000154760|HPRD:08716|Vega:OTTHUMG00000165108 17 17q12 schlafen family member 13 protein-coding SLFN13 schlafen family member 13 O - 20121230 -9606 146861 SLC35G3 - AMAC1|TMEM21A HGNC:26848|Ensembl:ENSG00000164729|HPRD:12450|Vega:OTTHUMG00000132929 17 17q12 solute carrier family 35, member G3 protein-coding SLC35G3 solute carrier family 35, member G3 O acyl-malonyl condensing enzyme 1|acyl-malonyl-condensing enzyme 1|protein AMAC1|solute carrier family 35 member G3|transmembrane protein 21A 20121230 -9606 146862 UNC45B - CMYA4|SMUNC45|UNC45 HGNC:14304|MIM:611220|Ensembl:ENSG00000141161|HPRD:10840|Vega:OTTHUMG00000132931 17 17q12 unc-45 homolog B (C. elegans) protein-coding UNC45B unc-45 homolog B (C. elegans) O UNC-45B|cardiomyopathy associated 4|protein unc-45 homolog B|striated muscle UNC45 20121230 -9606 146880 LOC146880 - - - 17 17q24 Rho GTPase activating protein 27 pseudogene pseudo - - - - 20121230 -9606 146894 CD300LG UNQ422/PRO846 CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4 HGNC:30455|MIM:610520|Ensembl:ENSG00000161649|HPRD:18222|Vega:OTTHUMG00000181796 17 17q21.31 CD300 molecule-like family member g protein-coding CD300LG CD300 molecule-like family member g O CD300 antigen like family member G|CD300 antigen-like family member G|CD300 molecule like family member g|CMRF35-like molecule 9|triggering receptor expressed on myeloid cells 4 20121230 -9606 146909 KIF18B - - HGNC:27102|MIM:614570|Ensembl:ENSG00000186185|Vega:OTTHUMG00000179867 17 17q21.31 kinesin family member 18B protein-coding KIF18B kinesin family member 18B O kinesin-like protein KIF18B 20121230 -9606 146923 RUNDC1 LP5161 - HGNC:25418|Ensembl:ENSG00000198863|HPRD:15283|Vega:OTTHUMG00000180659 17 17q21.31 RUN domain containing 1 protein-coding RUNDC1 RUN domain containing 1 O RUN domain-containing protein 1 20121230 -9606 146956 EME1 - MMS4L|SLX2A HGNC:24965|MIM:610885|Ensembl:ENSG00000154920|Vega:OTTHUMG00000164974 17 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) protein-coding EME1 essential meiotic endonuclease 1 homolog 1 (S. pombe) O MMS4 homolog|SLX2 structure-specific endonuclease subunit homolog A|crossover junction endonuclease EME1|essential meiotic endonuclease 1 homolog 2|hMMS4|homolog of yeast EME1 endonuclease 20121230 -9606 147004 LOC147004 - - - 17 17q12 uncharacterized LOC147004 unknown - - - - 20120508 -9606 147007 TMEM199 - C17orf32 HGNC:18085|Ensembl:ENSG00000244045|HPRD:12679|Vega:OTTHUMG00000132498 17 17q11.2 transmembrane protein 199 protein-coding TMEM199 transmembrane protein 199 O - 20121230 -9606 147011 PROCA1 - - HGNC:28600|Ensembl:ENSG00000167525|HPRD:07131|Vega:OTTHUMG00000132682 17 17q11.2 protein interacting with cyclin A1 protein-coding PROCA1 protein interacting with cyclin A1 O proline-rich cyclin A1-interacting protein|protein PROCA1 20121230 -9606 147015 DHRS13 UNQ419/PRO853 SDR7C5 HGNC:28326|Ensembl:ENSG00000167536|HPRD:14488|Vega:OTTHUMG00000132678 17 17q11.2 dehydrogenase/reductase (SDR family) member 13 protein-coding DHRS13 dehydrogenase/reductase (SDR family) member 13 O dehydrogenase/reductase SDR family member 13|short chain dehydrogenase/reductase family 7C, member 5 20121230 -9606 147040 KCTD11 - C17orf36|KCASH1|REN|REN/KCTD11 HGNC:21302|MIM:609848|Ensembl:ENSG00000213859|HPRD:13763|Vega:OTTHUMG00000132061 17 17p13.1 potassium channel tetramerisation domain containing 11 protein-coding KCTD11 potassium channel tetramerisation domain containing 11 O BTB/POZ domain-containing protein KCTD11|potassium channel tetramerization domain containing 11|retinoic acid, EGF, NGF induced gene protein|retinoic acid, EGF, NGF induced gene/potassium channel tetramerization domain containing 11 20121230 -9606 147081 CRHR1-IT1 - C17orf69 HGNC:26327|HPRD:08052 17 17q21.31 CRHR1 intronic transcript 1 (non-protein coding) miscRNA CRHR1-IT1 CRHR1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 147093 LOC147093 - - - 17 17q21.31 uncharacterized LOC147093 miscRNA - - - - 20121230 -9606 147111 NOTUM OK/SW-CL.30 - HGNC:27106|MIM:609847|Ensembl:ENSG00000185269|HPRD:14073|Vega:OTTHUMG00000154416 17 17q25.3 notum pectinacetylesterase homolog (Drosophila) protein-coding NOTUM notum pectinacetylesterase homolog (Drosophila) O protein notum homolog 20121230 -9606 147138 TMC8 - EV2|EVER2|EVIN2 HGNC:20474|MIM:605829|Ensembl:ENSG00000167895|HPRD:08387|Vega:OTTHUMG00000177436 17 17q25.3 transmembrane channel-like 8 protein-coding TMC8 transmembrane channel-like 8 O epidermodysplasia verruciformis 2|epidermodysplasia verruciformis protein 2|transmembrane channel-like protein 8 20121230 -9606 147150 UPF3AP2 - - HGNC:30567 17 17p11.2 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 2 pseudo UPF3AP2 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 2 O - 20121230 -9606 147166 TRIM16L - TRIM70 HGNC:32670|Ensembl:ENSG00000108448|HPRD:18731|Vega:OTTHUMG00000059050 17 17p11.2 tripartite motif containing 16-like protein-coding TRIM16L tripartite motif containing 16-like O tripartite motif protein 70|tripartite motif-containing 16-like|tripartite motif-containing protein 16-like protein|tripartite motif-containing protein 70 20121230 -9606 147172 LRRC37BP1 hCG_1774989 LRRC37B2 HGNC:25390|HPRD:13217 17 17q11.2 leucine rich repeat containing 37B pseudogene 1 pseudo LRRC37BP1 leucine rich repeat containing 37B pseudogene 1 O - 20121230 -9606 147179 WIPF2 PP10631 WICH|WIRE HGNC:30923|MIM:609692|Ensembl:ENSG00000171475|HPRD:18304|Vega:OTTHUMG00000133331 17 17q21.2 WAS/WASL interacting protein family, member 2 protein-coding WIPF2 WAS/WASL interacting protein family, member 2 O WAS/WASL-interacting protein family member 2|WASP-binding protein|WASP-interacting protein-related protein|WIP- and CR16-homologous protein|WIP-related protein 20121230 -9606 147183 KRT25 - KRT25A HGNC:30839|Ensembl:ENSG00000204897|HPRD:17242|Vega:OTTHUMG00000133373 17 17q21.2 keratin 25 protein-coding KRT25 keratin 25 O CK-25|K25|K25A|cytokeratin-25|keratin 25A|keratin, type I cytoskeletal 25|keratin-25|keratin-25A|type I inner root sheath specific keratin 25 irs1|type I inner root sheath-specific keratin-K25irs1 20121230 -9606 147184 TMEM99 - - HGNC:28305|Ensembl:ENSG00000167920|HPRD:14478|Vega:OTTHUMG00000133579 17 17q21.2 transmembrane protein 99 protein-coding TMEM99 transmembrane protein 99 O - 20121230 -9606 147199 SCGB1C1 - RYD5 HGNC:18394|MIM:610176|HPRD:18024 11 11p15.5 secretoglobin, family 1C, member 1 protein-coding SCGB1C1 secretoglobin, family 1C, member 1 O ligand binding protein RYD5|secretoglobin RYD5|secretoglobin family 1C member 1 20121230 -9606 147226 UPF3AP1 - - HGNC:30568 17 17p11.2 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 1 pseudo UPF3AP1 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 1 O - 20121230 -9606 147228 KRT17P1 - - HGNC:6428 17 17p11.2 keratin 17 pseudogene 1 pseudo KRT17P1 keratin 17 pseudogene 1 O - 20121230 -9606 147276 C18orf15 - HsT3231 HGNC:26447 18 18p11.21 chromosome 18 open reading frame 15 unknown C18orf15 chromosome 18 open reading frame 15 O - 20120622 -9606 147323 STARD6 - - HGNC:18066|MIM:607051|Ensembl:ENSG00000174448|HPRD:09518|Vega:OTTHUMG00000132702 18 18q21.2 StAR-related lipid transfer (START) domain containing 6 protein-coding STARD6 StAR-related lipid transfer (START) domain containing 6 O START domain containing 6|START domain-containing protein 6|stAR-related lipid transfer protein 6 20121230 -9606 147339 C18orf25 - ARKL1 HGNC:28172|Ensembl:ENSG00000152242|HPRD:12690|Vega:OTTHUMG00000179190 18 18q21.1 chromosome 18 open reading frame 25 protein-coding C18orf25 chromosome 18 open reading frame 25 O ARKadia-like 1|uncharacterized protein C18orf25 20121230 -9606 147372 CCBE1 UNQ1921/PRO4395 - HGNC:29426|MIM:612753|Ensembl:ENSG00000183287|HPRD:08703|Vega:OTTHUMG00000180087 18 18q21.32 collagen and calcium binding EGF domains 1 protein-coding CCBE1 collagen and calcium binding EGF domains 1 O collagen and calcium-binding EGF domain-containing protein 1|full of fluid protein homolog 20121230 -9606 147381 CBLN2 UNQ1892/PRO4338 - HGNC:1544|MIM:600433|Ensembl:ENSG00000141668|HPRD:15970|Vega:OTTHUMG00000132825 18 18q22.3 cerebellin 2 precursor protein-coding CBLN2 cerebellin 2 precursor O cerebellin-2 20121230 -9606 147407 SLC25A52 - MCART2 HGNC:23324|Ensembl:ENSG00000141437|HPRD:18732|Vega:OTTHUMG00000179617 18 18q12.1 solute carrier family 25, member 52 protein-coding SLC25A52 solute carrier family 25, member 52 O mitochondrial carrier triple repeat 2|mitochondrial carrier triple repeat protein 2|solute carrier family 25 member 52 20121230 -9606 147409 DSG4 - CDGF13|CDHF13|LAH HGNC:21307|MIM:607892|Ensembl:ENSG00000175065|HPRD:06387|Vega:OTTHUMG00000131979 18 18q12.1 desmoglein 4 protein-coding DSG4 desmoglein 4 O CDH family member 13|cadherin family member 13|desmoglein-4 20121230 -9606 147429 AQP4-AS1 - C18orf16|CHST9-AS1 HGNC:26399|HPRD:08510 18 18q11.2 AQP4 antisense RNA 1 miscRNA AQP4-AS1 AQP4 antisense RNA 1 O - 20121230 -9606 147463 ANKRD29 - - HGNC:27110|Ensembl:ENSG00000154065|HPRD:12464|Vega:OTTHUMG00000131875 18 18q11.2 ankyrin repeat domain 29 protein-coding ANKRD29 ankyrin repeat domain 29 O ankyrin repeat domain-containing protein 29 20121230 -9606 147468 WBP2P1 hCG_1643692 - HGNC:31695 18 18q11.2 WW domain binding protein 2 pseudogene 1 pseudo WBP2P1 WW domain binding protein 2 pseudogene 1 O - 20121230 -9606 147495 APCDD1 FP7019 B7323|DRAPC1|HHS|HTS HGNC:15718|MIM:607479|Ensembl:ENSG00000154856|HPRD:09595|Vega:OTTHUMG00000131635 18 18p11.22 adenomatosis polyposis coli down-regulated 1 protein-coding APCDD1 adenomatosis polyposis coli down-regulated 1 O adenomatosis polyposis coli down-regulated 1 protein|hypoptrichosis simplex|protein APCDD1 20121230 -9606 147525 LINC00526 - C18orf18|HsT959 HGNC:28278 18 18p11.31 long intergenic non-protein coding RNA 526 miscRNA LINC00526 long intergenic non-protein coding RNA 526 O - 20121230 -9606 147645 VSIG10L - - HGNC:27111|Ensembl:ENSG00000186806 19 19q13.41 V-set and immunoglobulin domain containing 10 like protein-coding VSIG10L V-set and immunoglobulin domain containing 10 like O V-set and immunoglobulin domain-containing protein 10-like 20121230 -9606 147646 LOC147646 - - Ensembl:ENSG00000262874|Vega:OTTHUMG00000177322 19 19q13.41 uncharacterized LOC147646 protein-coding - - - uncharacterized protein LOC147646 20121230 -9606 147650 LINC00085 - NCRNA00085|SPACA6 HGNC:27113|HPRD:17301 19 19q13.41 long intergenic non-protein coding RNA 85 miscRNA LINC00085 long intergenic non-protein coding RNA 85 O - 20121230 -9606 147657 ZNF480 - - HGNC:23305|MIM:613910|Ensembl:ENSG00000198464|HPRD:15799|Vega:OTTHUMG00000157507 19 19q13.41 zinc finger protein 480 protein-coding ZNF480 zinc finger protein 480 O - 20121230 -9606 147658 ZNF534 - KRBO3 HGNC:26337|Ensembl:ENSG00000198633|Vega:OTTHUMG00000156493 19 19q13.41 zinc finger protein 534 protein-coding ZNF534 zinc finger protein 534 O KRAB domain only 3|KRAB domain only protein 3 20121230 -9606 147660 ZNF578 - - HGNC:26449|Ensembl:ENSG00000258405|HPRD:15857|Vega:OTTHUMG00000156468 19 19q13.41 zinc finger protein 578 protein-coding ZNF578 zinc finger protein 578 O - 20121230 -9606 147664 ERVV-1 - ENVV1|ERVV-2|HERV-V1 HGNC:26501|HPRD:08124 19 19q13.41 endogenous retrovirus group V, member 1 protein-coding ERVV-1 endogenous retrovirus group V, member 1 O HERV-V_19q13.41 provirus ancestral Env polyprotein 1|endogenous retrovirus group V, member 2|envelope glycoprotein ENVV1 20121230 -9606 147670 SMIM17 - - HGNC:27114 19 19q13.43 small integral membrane protein 17 protein-coding SMIM17 small integral membrane protein 17 O uncharacterized protein LOC147670 20121230 -9606 147685 C19orf18 - - HGNC:28642|Ensembl:ENSG00000177025|HPRD:12699 19 19q13.43 chromosome 19 open reading frame 18 protein-coding C19orf18 chromosome 19 open reading frame 18 O uncharacterized protein C19orf18 20121230 -9606 147686 ZNF418 - - HGNC:20647|Ensembl:ENSG00000196724|HPRD:11714 19 19q13.43 zinc finger protein 418 protein-coding ZNF418 zinc finger protein 418 O - 20121230 -9606 147687 ZNF417 - - HGNC:20646|Ensembl:ENSG00000173480|HPRD:18341 19 19q13.43 zinc finger protein 417 protein-coding ZNF417 zinc finger protein 417 O - 20121230 -9606 147694 ZNF548 - - HGNC:26561|Ensembl:ENSG00000188785|HPRD:15832 19 19q13.43 zinc finger protein 548 protein-coding ZNF548 zinc finger protein 548 O - 20121230 -9606 147699 PPM1N - - HGNC:26845|Ensembl:ENSG00000213889|HPRD:08270|Vega:OTTHUMG00000140397 19 19q13.32 protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) protein-coding PPM1N protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) O probable protein phosphatase 1N 20121230 -9606 147700 KLC3 - KLC2|KLC2L|KLCt|KNS2B HGNC:20717|MIM:601334|Ensembl:ENSG00000104892|HPRD:03212|Vega:OTTHUMG00000143722 19 19q13 kinesin light chain 3 protein-coding KLC3 kinesin light chain 3 O kinesin light chain 2 20121230 -9606 147710 IGSF23 - - HGNC:40040|Ensembl:ENSG00000216588|Vega:OTTHUMG00000151531 19 19q13.31 immunoglobulin superfamily, member 23 protein-coding IGSF23 immunoglobulin superfamily, member 23 O immunoglobulin superfamily member 23 20121230 -9606 147711 ZNF285B - - HGNC:33262 19 19q13.31 zinc finger protein 285B, pseudogene pseudo ZNF285B zinc finger protein 285B, pseudogene O - 20121230 -9606 147719 LYPD4 UNQ2552/PRO6181 SMR HGNC:28659|Ensembl:ENSG00000183103|HPRD:14626 19 19q13.2 LY6/PLAUR domain containing 4 protein-coding LYPD4 LY6/PLAUR domain containing 4 O ly6/PLAUR domain-containing protein 4|sperm membrane receptor 20121230 -9606 147727 ILF3-AS1 - - HGNC:27115 19 19p13.2 ILF3 antisense RNA 1 (head to head) miscRNA ILF3-AS1 ILF3 antisense RNA 1 (head to head) O - 20121230 -9606 147741 ZNF560 - - HGNC:26484|Ensembl:ENSG00000198028|HPRD:15842|Vega:OTTHUMG00000180130 19 19p13.2 zinc finger protein 560 protein-coding ZNF560 zinc finger protein 560 O - 20121230 -9606 147744 TMEM190 - MDAC1 HGNC:29632|Ensembl:ENSG00000160472|HPRD:14373|Vega:OTTHUMG00000180794 19 19q13.42 transmembrane protein 190 protein-coding TMEM190 transmembrane protein 190 O - 20121230 -9606 147746 HIPK4 - - HGNC:19007|MIM:611712|Ensembl:ENSG00000160396|HPRD:13652 19 19q13.2 homeodomain interacting protein kinase 4 protein-coding HIPK4 homeodomain interacting protein kinase 4 O homeodomain-interacting protein kinase 4 20121230 -9606 147791 LOC147791 - - - 19 19p13.3 uncharacterized LOC147791 unknown - - - - 20121209 -9606 147798 TMC4 XXbac-BCX105G6.3 - HGNC:22998|Ensembl:ENSG00000167608|HPRD:15515|Vega:OTTHUMG00000066485 19 19q13.42 transmembrane channel-like 4 protein-coding TMC4 transmembrane channel-like 4 O transmembrane channel-like protein 4 20121230 -9606 147804 TPM3P9 - - HGNC:44142|HPRD:14075 19 19q13.42 tropomyosin 3 pseudogene 9 pseudo TPM3P9 tropomyosin 3 pseudogene 9 O - 20121230 -9606 147807 ZNF524 - - HGNC:28322|Ensembl:ENSG00000171443|HPRD:15817|Vega:OTTHUMG00000180859 19 19q13.42 zinc finger protein 524 protein-coding ZNF524 zinc finger protein 524 O - 20121230 -9606 147808 ZNF784 - - HGNC:33111|Ensembl:ENSG00000179922|HPRD:14076|Vega:OTTHUMG00000180860 19 19q13.42 zinc finger protein 784 protein-coding ZNF784 zinc finger protein 784 O - 20121230 -9606 147837 ZNF563 - - HGNC:30498|Ensembl:ENSG00000188868|HPRD:15845|Vega:OTTHUMG00000156413 19 19p13.2 zinc finger protein 563 protein-coding ZNF563 zinc finger protein 563 O - 20121230 -9606 147841 SPC24 - SPBC24 HGNC:26913|MIM:609394|Ensembl:ENSG00000161888|HPRD:15464|Vega:OTTHUMG00000180798 19 19p13.2 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) protein-coding SPC24 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) O hSpc24|kinetochore protein Spc24|spindle pole body component 24 homolog 20121230 -9606 147872 CCDC155 - KASH5 HGNC:26520|Ensembl:ENSG00000161609|HPRD:08134 19 19q13.33 coiled-coil domain containing 155 protein-coding CCDC155 coiled-coil domain containing 155 O coiled-coil domain-containing protein 155 20121230 -9606 147906 DACT3 - RRR1 HGNC:30745|MIM:611112|Ensembl:ENSG00000197380|HPRD:17505|Vega:OTTHUMG00000153070 19 19q13.32 dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis) protein-coding DACT3 dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis) O antagonist of beta-catenin Dapper homolog 3|arginine rich region 1|arginine-rich region 1 protein|dapper antagonist of catenin 3|dapper homolog 3 20121230 -9606 147912 SIX5 - BOR2|DMAHP HGNC:10891|MIM:600963|Ensembl:ENSG00000177045|HPRD:09024|Vega:OTTHUMG00000172208 19 19q13.32 SIX homeobox 5 protein-coding SIX5 SIX homeobox 5 O DM locus-associated homeodomain protein|dystrophia myotonica-associated homeodomain protein|homeobox protein SIX5|sine oculis homeobox homolog 5 20121230 -9606 147920 IGFL2 UNQ645/PRO1275 UNQ645|VPRI645 HGNC:32929|MIM:610545|Ensembl:ENSG00000204866|HPRD:13729 19 19q13.32 IGF-like family member 2 protein-coding IGFL2 IGF-like family member 2 O insulin growth factor-like family member 2 20121230 -9606 147923 ZNF420 - APAK HGNC:20649|Ensembl:ENSG00000197050|HPRD:08122|Vega:OTTHUMG00000048168 19 19q13.12 zinc finger protein 420 protein-coding ZNF420 zinc finger protein 420 O ATM and p53-associated KZNF protein 20121230 -9606 147929 ZNF565 - - HGNC:26726|MIM:614275|Ensembl:ENSG00000196357|HPRD:15846|Vega:OTTHUMG00000180508 19 19q13.12 zinc finger protein 565 protein-coding ZNF565 zinc finger protein 565 O - 20121230 -9606 147945 NLRP4 - CLR19.5|CT58|NALP4|PAN2|PYPAF4|RNH2 HGNC:22943|MIM:609645|Ensembl:ENSG00000160505|HPRD:09619|Vega:OTTHUMG00000181734 19 19q13.43 NLR family, pyrin domain containing 4 protein-coding NLRP4 NLR family, pyrin domain containing 4 O NACHT, LRR and PYD containing protein 4|NACHT, LRR and PYD domains-containing protein 4|NACHT, leucine rich repeat and PYD containing 4|PAAD and NACHT-containing protein 2|PYRIN and NACHT-containing protein 2|PYRIN-containing APAF1-like protein 4|cancer/testis antigen 58|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 4|ribonuclease inhibitor 2 20121230 -9606 147947 ZNF542 - - HGNC:25393|HPRD:15828 19 19q13.43 zinc finger protein 542 pseudo ZNF542 zinc finger protein 542 O - 20121230 -9606 147948 ZNF582 - - HGNC:26421|Ensembl:ENSG00000018869|HPRD:15859|Vega:OTTHUMG00000181939 19 19q13.43 zinc finger protein 582 protein-coding ZNF582 zinc finger protein 582 O - 20121230 -9606 147949 ZNF583 - - HGNC:26427|Ensembl:ENSG00000198440|HPRD:15860|Vega:OTTHUMG00000168874 19 19q13.43 zinc finger protein 583 protein-coding ZNF583 zinc finger protein 583 O zinc finger protein L3-5 20121230 -9606 147965 FAM98C - - HGNC:27119|Ensembl:ENSG00000130244|HPRD:14077|Vega:OTTHUMG00000182084 19 19q13.2 family with sequence similarity 98, member C protein-coding FAM98C family with sequence similarity 98, member C O protein FAM98C 20121230 -9606 147968 CAPN12 - - HGNC:13249|MIM:608839|Ensembl:ENSG00000182472|HPRD:07007 19 19q13.2 calpain 12 protein-coding CAPN12 calpain 12 O CANP 12|calcium-activated neutral proteinase 12|calpain-12 20121230 -9606 147991 DPY19L3 - - HGNC:27120|MIM:613894|Ensembl:ENSG00000178904|HPRD:14078|Vega:OTTHUMG00000180222 19 19q13.11 dpy-19-like 3 (C. elegans) protein-coding DPY19L3 dpy-19-like 3 (C. elegans) O dpy-19-like protein 3|protein dpy-19 homolog 3 20121230 -9606 148003 LGALS16 - - HGNC:40039|Ensembl:ENSG00000249861 19 19q13.2 lectin, galactoside-binding, soluble, 16 protein-coding LGALS16 lectin, galactoside-binding, soluble, 16 O beta-galactoside-binding lectin|galectin-16 20121230 -9606 148014 TTC9B - - HGNC:26395|Ensembl:ENSG00000174521|HPRD:08329 19 19q13.2 tetratricopeptide repeat domain 9B protein-coding TTC9B tetratricopeptide repeat domain 9B O TPR repeat protein 9B|tetratricopeptide repeat protein 9B 20121230 -9606 148022 TICAM1 - IIAE6|PRVTIRB|TICAM-1|TRIF HGNC:18348|MIM:607601|Ensembl:ENSG00000127666|HPRD:06350|Vega:OTTHUMG00000180248 19 19p13.3 toll-like receptor adaptor molecule 1 protein-coding TICAM1 toll-like receptor adaptor molecule 1 O TIR domain containing adaptor inducing interferon-beta|TIR domain-containing adapter molecule 1|TIR domain-containing adapter protein inducing IFN-beta|proline-rich, vinculin and TIR domain-containing protein B|putative NF-kappa-B-activating protein 502H|toll-interleukin-1 receptor domain-containing adapter protein inducing interferon beta 20121230 -9606 148046 CIRBP-AS1 - C19orf23 HGNC:28588|HPRD:16626 19 19p13.3 CIRBP antisense RNA 1 miscRNA CIRBP-AS1 CIRBP antisense RNA 1 O - 20121230 -9606 148066 ZNRF4 - RNF204|SPERIZIN|Ssrzf1|spzn HGNC:17726|MIM:612063|Ensembl:ENSG00000105428|HPRD:15895|Vega:OTTHUMG00000180356 19 19p13.3 zinc and ring finger 4 protein-coding ZNRF4 zinc and ring finger 4 O RING finger protein 204|zinc/RING finger protein 4 20121230 -9606 148103 ZNF599 - - HGNC:26408|Ensembl:ENSG00000153896|HPRD:18355|Vega:OTTHUMG00000182346 19 19q13.11 zinc finger protein 599 protein-coding ZNF599 zinc finger protein 599 O - 20121230 -9606 148109 FAM187B - TMEM162 HGNC:26366|Ensembl:ENSG00000177558|HPRD:08071|Vega:OTTHUMG00000164450 19 19q13.12 family with sequence similarity 187, member B protein-coding FAM187B family with sequence similarity 187, member B O protein FAM187B|transmembrane protein 162 20121230 -9606 148113 CILP2 - CLIP-2 HGNC:24213|MIM:612419|Ensembl:ENSG00000160161|HPRD:16714|Vega:OTTHUMG00000182148 19 19p13.11 cartilage intermediate layer protein 2 protein-coding CILP2 cartilage intermediate layer protein 2 O CILP-2|cartilage intermediate layer protein-like protein 2 20121230 -9606 148137 C19orf55 - - HGNC:25204|Ensembl:ENSG00000167595|HPRD:14079|Vega:OTTHUMG00000168103 19 19q13.12 chromosome 19 open reading frame 55 protein-coding C19orf55 chromosome 19 open reading frame 55 O uncharacterized protein C19orf55 20121230 -9606 148145 LOC148145 - - - 19 19q12 uncharacterized LOC148145 miscRNA - - - - 20121230 -9606 148156 ZNF558 - - HGNC:26422|Ensembl:ENSG00000167785|HPRD:15841 19 19p13.2 zinc finger protein 558 protein-coding ZNF558 zinc finger protein 558 O - 20121230 -9606 148170 CDC42EP5 XXbac-BCX535A19.5 Borg3|CEP5 HGNC:17408|MIM:609171|Ensembl:ENSG00000167617|HPRD:13023|Vega:OTTHUMG00000065699 19 19q13.42 CDC42 effector protein (Rho GTPase binding) 5 protein-coding CDC42EP5 CDC42 effector protein (Rho GTPase binding) 5 O 1700027J19Rik|2010007O02Rik|binder of Rho GTPases 3|cdc42 effector protein 5 20121230 -9606 148189 LINC00662 - - HGNC:27122 19 19q11 long intergenic non-protein coding RNA 662 miscRNA LINC00662 long intergenic non-protein coding RNA 662 O - 20121230 -9606 148198 ZNF98 hCG_1780278 F7175|ZNF739 HGNC:13174|MIM:603980|Ensembl:ENSG00000197360 19 19p12 zinc finger protein 98 protein-coding ZNF98 zinc finger protein 98 O zinc finger protein 739|zinc finger protein F7175 20121230 -9606 148203 ZNF738 - - HGNC:32469 19 19p12 zinc finger protein 738 pseudo ZNF738 zinc finger protein 738 O - 20121230 -9606 148206 ZNF714 - - HGNC:27124|Ensembl:ENSG00000160352|HPRD:18733 19 19p12 zinc finger protein 714 protein-coding ZNF714 zinc finger protein 714 O - 20121230 -9606 148213 ZNF681 - - HGNC:26457|Ensembl:ENSG00000196172|HPRD:08102|Vega:OTTHUMG00000150831 19 19p12 zinc finger protein 681 protein-coding ZNF681 zinc finger protein 681 O - 20121230 -9606 148223 C19orf25 - - HGNC:26711|Ensembl:ENSG00000119559|HPRD:12703|Vega:OTTHUMG00000180092 19 19p13.3 chromosome 19 open reading frame 25 protein-coding C19orf25 chromosome 19 open reading frame 25 O UPF0449 protein C19orf25 20121230 -9606 148229 ATP8B3 - ATPIK HGNC:13535|MIM:605866|Ensembl:ENSG00000130270|HPRD:05793|Vega:OTTHUMG00000166189 19 19p13.3 ATPase, aminophospholipid transporter, class I, type 8B, member 3 protein-coding ATP8B3 ATPase, aminophospholipid transporter, class I, type 8B, member 3 O ATPase, class I, type 8B, member 3|aminophospholipid translocase ATP8B3|potential phospholipid-transporting ATPase IK|probable phospholipid-transporting ATPase IK 20121230 -9606 148231 FLJ25328 - - HPRD:08056 19 19p13.12 uncharacterized LOC148231 miscRNA - - - - 20121230 -9606 148252 DIRAS1 - Di-Ras1|GBTS1|RIG HGNC:19127|MIM:607862|Ensembl:ENSG00000176490|HPRD:09710|Vega:OTTHUMG00000180439 19 19p13.3 DIRAS family, GTP-binding RAS-like 1 protein-coding DIRAS1 DIRAS family, GTP-binding RAS-like 1 O GTP-binding protein Di-Ras1|distinct subgroup of the Ras family member 1|ras-related inhibitor of cell growth|small GTP-binding tumor suppressor 1 20121230 -9606 148254 ZNF555 - - HGNC:28382|Ensembl:ENSG00000186300|HPRD:15838|Vega:OTTHUMG00000180500 19 19p13.3 zinc finger protein 555 protein-coding ZNF555 zinc finger protein 555 O - 20121230 -9606 148266 ZNF569 - ZAP1|ZNF HGNC:24737|MIM:613904|Ensembl:ENSG00000196437|HPRD:15849|Vega:OTTHUMG00000048172 19 19q13.12 zinc finger protein 569 protein-coding ZNF569 zinc finger protein 569 O DNA-binding protein 20121230 -9606 148268 ZNF570 - - HGNC:26416|Ensembl:ENSG00000171827|HPRD:11729|Vega:OTTHUMG00000048176 19 19q13.12 zinc finger protein 570 protein-coding ZNF570 zinc finger protein 570 O - 20121230 -9606 148281 SYT6 RP5-1037B23.1 sytVI HGNC:18638|MIM:607718|Ensembl:ENSG00000134207|HPRD:09654|Vega:OTTHUMG00000011755 1 1p13.2 synaptotagmin VI protein-coding SYT6 synaptotagmin VI O synaptotagmin-6 20121230 -9606 148300 SONP1 - - HGNC:30608 1 1q23.1 SON pseudogene 1 pseudo SONP1 SON pseudogene 1 O - 20121230 -9606 148304 C1orf74 - - HGNC:26319|Ensembl:ENSG00000162757|HPRD:08682|Vega:OTTHUMG00000036483 1 1q32.2 chromosome 1 open reading frame 74 protein-coding C1orf74 chromosome 1 open reading frame 74 O UPF0739 protein C1orf74 20121230 -9606 148327 CREB3L4 RP11-422P24.8 AIBZIP|ATCE1|CREB3|CREB4|JAL|hJAL HGNC:18854|MIM:607138|Ensembl:ENSG00000143578|HPRD:06323|Vega:OTTHUMG00000037159 1 1q21.3 cAMP responsive element binding protein 3-like 4 protein-coding CREB3L4 cAMP responsive element binding protein 3-like 4 O CREB-4|androgen-induced basic leucine zipper protein|attaching to CRE-like 1|cAMP responsive element binding protein 1|cAMP-responsive element-binding protein 3-like protein 4|cAMP-responsive element-binding protein 4|cyclic AMP-responsive element-binding protein 3-like protein 4|cyclic AMP-responsive element-binding protein 4|tisp40|transcript induced in spermiogenesis protein 40 20121230 -9606 148330 MRPS33P1 - - HGNC:29764 1 1q21.3 mitochondrial ribosomal protein S33 pseudogene 1 pseudo MRPS33P1 mitochondrial ribosomal protein S33 pseudogene 1 O - 20121230 -9606 148345 C1orf127 - - HGNC:26730|Ensembl:ENSG00000175262|HPRD:08780|Vega:OTTHUMG00000002032 1 1p36.22 chromosome 1 open reading frame 127 protein-coding C1orf127 chromosome 1 open reading frame 127 O uncharacterized protein C1orf127 20121230 -9606 148362 BROX hCG_25336 C1orf58|RP11-452F19.1 HGNC:26512|Ensembl:ENSG00000162819|HPRD:08725|Vega:OTTHUMG00000037650 1 1q41 BRO1 domain and CAAX motif containing protein-coding BROX BRO1 domain and CAAX motif containing O BRO1 domain containing protein|BRO1 domain- and CAAX motif-containing protein|BRO1 domain-containing protein BROX|Bro1-domain-containing protein 20121230 -9606 148398 SAMD11 RP11-54O7.4 - HGNC:28706|Ensembl:ENSG00000187634|HPRD:10081|Vega:OTTHUMG00000040719 1 1p36.33 sterile alpha motif domain containing 11 protein-coding SAMD11 sterile alpha motif domain containing 11 O SAM domain-containing protein 11|sterile alpha motif domain containing 11 splice variant ASV1|sterile alpha motif domain containing 11 splice variant ASV10|sterile alpha motif domain containing 11 splice variant ASV11|sterile alpha motif domain containing 11 splice variant ASV12|sterile alpha motif domain containing 11 splice variant ASV13|sterile alpha motif domain containing 11 splice variant ASV14|sterile alpha motif domain containing 11 splice variant ASV15|sterile alpha motif domain containing 11 splice variant ASV16|sterile alpha motif domain containing 11 splice variant ASV17|sterile alpha motif domain containing 11 splice variant ASV18|sterile alpha motif domain containing 11 splice variant ASV19|sterile alpha motif domain containing 11 splice variant ASV2|sterile alpha motif domain containing 11 splice variant ASV20|sterile alpha motif domain containing 11 splice variant ASV21|sterile alpha motif domain containing 11 splice variant ASV22|sterile alpha motif domain containing 11 splice variant ASV23|sterile alpha motif domain containing 11 splice variant ASV24|sterile alpha motif domain containing 11 splice variant ASV25|sterile alpha motif domain containing 11 splice variant ASV26|sterile alpha motif domain containing 11 splice variant ASV27|sterile alpha motif domain containing 11 splice variant ASV28|sterile alpha motif domain containing 11 splice variant ASV29|sterile alpha motif domain containing 11 splice variant ASV3|sterile alpha motif domain containing 11 splice variant ASV30|sterile alpha motif domain containing 11 splice variant ASV31|sterile alpha motif domain containing 11 splice variant ASV32|sterile alpha motif domain containing 11 splice variant ASV33|sterile alpha motif domain containing 11 splice variant ASV34|sterile alpha motif domain containing 11 splice variant ASV35|sterile alpha motif domain containing 11 splice variant ASV36|sterile alpha motif domain containing 11 splice variant ASV37|sterile alpha motif domain containing 11 splice variant ASV38|sterile alpha motif domain containing 11 splice variant ASV39|sterile alpha motif domain containing 11 splice variant ASV4|sterile alpha motif domain containing 11 splice variant ASV40|sterile alpha motif domain containing 11 splice variant ASV41|sterile alpha motif domain containing 11 splice variant ASV42|sterile alpha motif domain containing 11 splice variant ASV43|sterile alpha motif domain containing 11 splice variant ASV44|sterile alpha motif domain containing 11 splice variant ASV45|sterile alpha motif domain containing 11 splice variant ASV5|sterile alpha motif domain containing 11 splice variant ASV6|sterile alpha motif domain containing 11 splice variant ASV7|sterile alpha motif domain containing 11 splice variant ASV8|sterile alpha motif domain containing 11 splice variant ASV9|sterile alpha motif domain-containing protein 11 20121230 -9606 148413 LOC148413 - - - 1 1p36.33 uncharacterized LOC148413 miscRNA - - - - 20121230 -9606 148418 SAMD13 HSD42 RP11-376N17.1 HGNC:24582|Ensembl:ENSG00000203943|HPRD:17302|Vega:OTTHUMG00000009859 1 1p31.1 sterile alpha motif domain containing 13 protein-coding SAMD13 sterile alpha motif domain containing 13 O SAM domain-containing protein 13|dnaj-like protein (LOC148418)|sterile alpha motif domain-containing protein 13 20121230 -9606 148423 C1orf52 GM117 RP11-234D19.1|gm117 HGNC:24871|Ensembl:ENSG00000162642|HPRD:16637|Vega:OTTHUMG00000009966 1 1p22.3 chromosome 1 open reading frame 52 protein-coding C1orf52 chromosome 1 open reading frame 52 O BCL10-associated gene protein|UPF0690 protein C1orf52 20121230 -9606 148430 LOC148430 - - - 1 1q23.3 ribosomal protein S2 pseudogene pseudo - - - - 20121230 -9606 148479 PHF13 - PHF5|SPOC1 HGNC:22983|Ensembl:ENSG00000116273|HPRD:10150|Vega:OTTHUMG00000001439 1 1p36.31 PHD finger protein 13 protein-coding PHF13 PHD finger protein 13 O PHD zinc finger protein PHF5|survival time-associated PHD finger protein in ovarian cancer 1|survival time-associated PHD protein in ovarian cancer 20121230 -9606 148523 C1orf51 RP4-790G17.5 - HGNC:25200|Ensembl:ENSG00000159208|HPRD:14081|Vega:OTTHUMG00000012548 1 1q21.2 chromosome 1 open reading frame 51 protein-coding C1orf51 chromosome 1 open reading frame 51 O uncharacterized protein C1orf51 20121230 -9606 148534 TMEM56 - - HGNC:26477|Ensembl:ENSG00000152078|HPRD:08110|Vega:OTTHUMG00000010847 1 1p21.3 transmembrane protein 56 protein-coding TMEM56 transmembrane protein 56 O - 20121230 -9606 148545 NBPF4 RP11-483I13.1 - HGNC:26550|MIM:613994|Ensembl:ENSG00000196427|HPRD:08144|Vega:OTTHUMG00000011318 1 1p13.3 neuroblastoma breakpoint family, member 4 protein-coding NBPF4 neuroblastoma breakpoint family, member 4 O neuroblastoma breakpoint family member 4 20121230 -9606 148581 UBE2U - RP4-636O23.1 HGNC:28559|Ensembl:ENSG00000177414|HPRD:14599|Vega:OTTHUMG00000009023 1 1p31.3 ubiquitin-conjugating enzyme E2U (putative) protein-coding UBE2U ubiquitin-conjugating enzyme E2U (putative) O ubiquitin carrier protein U|ubiquitin-conjugating enzyme E2 U|ubiquitin-protein ligase U 20121230 -9606 148638 LOC148638 - - - 1 1q42.3 uncharacterized LOC148638 protein-coding - - - - 20120508 -9606 148641 SLC35F3 - - HGNC:23616|Ensembl:ENSG00000183780|HPRD:15378|Vega:OTTHUMG00000037929 1 1q42.2 solute carrier family 35, member F3 protein-coding SLC35F3 solute carrier family 35, member F3 O solute carrier family 35 member F3 20121230 -9606 148645 LINC00337 - C1orf211|NCRNA00337 HGNC:28620|HPRD:17550 1 1p36.31 long intergenic non-protein coding RNA 337 unknown LINC00337 long intergenic non-protein coding RNA 337 O - 20121230 -9606 148696 LOC148696 - - - 1 1q32.2 uncharacterized LOC148696 miscRNA - - - - 20121230 -9606 148709 LOC148709 - - - 1 1q32.1 actin pseudogene pseudo - - - - 20121230 -9606 148713 PTPRVP - ESP|OST-PTP|PTPRV HGNC:13421 1 1q32.1 protein tyrosine phosphatase, receptor type, V, pseudogene pseudo PTPRVP protein tyrosine phosphatase, receptor type, V, pseudogene O - 20121230 -9606 148738 HFE2 - HFE2A|HJV|JH|RGMC HGNC:4887|MIM:608374|Ensembl:ENSG00000168509|HPRD:10521|Vega:OTTHUMG00000013748 1 1q21.1 hemochromatosis type 2 (juvenile) protein-coding HFE2 hemochromatosis type 2 (juvenile) O RGM domain family member C|haemojuvelin|hemochromatosis type 2 protein|hemojuvelin|repulsive guidance molecule c 20121230 -9606 148741 ANKRD35 - - HGNC:26323|Ensembl:ENSG00000198483|HPRD:08050|Vega:OTTHUMG00000013743 1 1q21.1 ankyrin repeat domain 35 protein-coding ANKRD35 ankyrin repeat domain 35 O ankyrin repeat domain-containing protein 35 20121230 -9606 148753 FAM163A - C1orf76|NDSP|RP11-12M5.2 HGNC:28274|MIM:611727|Ensembl:ENSG00000143340|HPRD:14454|Vega:OTTHUMG00000035262 1 1q25.2 family with sequence similarity 163, member A protein-coding FAM163A family with sequence similarity 163, member A O cebelin|neuroblastoma derived secretory protein|neuroblastoma-derived secretory protein|protein FAM163A 20121230 -9606 148789 B3GALNT2 - B3GalNAc-T2 HGNC:28596|MIM:610194|Ensembl:ENSG00000162885|HPRD:16533|Vega:OTTHUMG00000040468 1 1q42.3 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 O UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2|UDP-GalNAc:betaGlcNAc beta-1,3-galactosaminyltransferase, polypeptide 2|beta 1,3-N-acetylgalactosaminyltransferase-II (MGC39558)|beta-1,3-GalNAc-T2|beta-1,3-N-acetylgalactosaminyltransferase II|beta-1,3-galactosaminyltransferase 2 20121230 -9606 148808 MFSD4 UNQ3064/PRO9894 UNQ3064 HGNC:25433|Ensembl:ENSG00000174514|HPRD:13228|Vega:OTTHUMG00000037197 1 1q32.1 major facilitator superfamily domain containing 4 protein-coding MFSD4 major facilitator superfamily domain containing 4 O major facilitator superfamily domain-containing protein 4 20121230 -9606 148811 PM20D1 - Cps1 HGNC:26518|Ensembl:ENSG00000162877|HPRD:08133|Vega:OTTHUMG00000035999 1 1q32.1 peptidase M20 domain containing 1 protein-coding PM20D1 peptidase M20 domain containing 1 O peptidase M20 domain-containing protein 1|probable carboxypeptidase PM20D1 20121230 -9606 148818 HSD17B7P1 - - HGNC:18689 1 1q44 hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 1 pseudo HSD17B7P1 hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 1 O - 20121230 -9606 148823 GCSAML RP11-978I15.8 C1orf150 HGNC:29583|Ensembl:ENSG00000169224|HPRD:14082|Vega:OTTHUMG00000040648 1 1q44 germinal center-associated, signaling and motility-like protein-coding GCSAML germinal center-associated, signaling and motility-like O germinal center-associated signaling and motility-like protein 20121230 -9606 148824 GCSAML-AS1 - - HGNC:41244 1 1q44 GCSAML antisense RNA 1 miscRNA GCSAML-AS1 GCSAML antisense RNA 1 O - 20121230 -9606 148867 SLC30A7 RP11-30G24.1 ZNT7|ZnT-7|ZnTL2 HGNC:19306|MIM:611149|Ensembl:ENSG00000162695|HPRD:15369|Vega:OTTHUMG00000011815 1 1p21.2 solute carrier family 30 (zinc transporter), member 7 protein-coding SLC30A7 solute carrier family 30 (zinc transporter), member 7 O solute carrier family 30 member 7|zinc transporter 7|zinc transporter ZnT-7|zinc transporter like 2|znt-like transporter 2 20121230 -9606 148870 CCDC27 RP1-286D6.1 - HGNC:26546|Ensembl:ENSG00000162592|HPRD:08141|Vega:OTTHUMG00000003504 1 1p36.32 coiled-coil domain containing 27 protein-coding CCDC27 coiled-coil domain containing 27 O coiled-coil domain-containing protein 27 20121230 -9606 148898 C1orf213 - - HGNC:25122|HPRD:14083 1 1p36.12 chromosome 1 open reading frame 213 miscRNA C1orf213 chromosome 1 open reading frame 213 O - 20121230 -9606 148930 KNCN RP11-49P4.2 Kino|L5 HGNC:26488|MIM:611455|Ensembl:ENSG00000162456|HPRD:08117|Vega:OTTHUMG00000007987 1 1p33 kinocilin protein-coding KNCN kinocilin O - 20121230 -9606 148932 MOB3C - MOB1E|MOBKL2C HGNC:29800|Ensembl:ENSG00000142961|HPRD:17584|Vega:OTTHUMG00000007989 1 1p33 MOB kinase activator 3C protein-coding MOB3C MOB kinase activator 3C O MOB1, Mps One Binder kinase activator-like 2C|mob1 homolog 2C 20121230 -9606 148979 GLIS1 - - HGNC:29525|MIM:610378|Ensembl:ENSG00000174332|HPRD:13581|Vega:OTTHUMG00000008079 1 1p32.3 GLIS family zinc finger 1 protein-coding GLIS1 GLIS family zinc finger 1 O GLI-similar 1|zinc finger protein GLIS1 20121230 -9606 149013 NBPF12 RP4-704D21.1 COAS1|KIAA1245 HGNC:24297|MIM:608607 1 1q21 neuroblastoma breakpoint family, member 12 protein-coding NBPF12 neuroblastoma breakpoint family, member 12 O chomosome one amplified sequence 1 cyclophilin|chromosome 1 amplified sequence 1|neuroblastoma breakpoint family member 12 20121230 -9606 149018 LELP1 - - HGNC:32046|MIM:611042|Ensembl:ENSG00000203784|HPRD:17303|Vega:OTTHUMG00000013935 1 1q21.3 late cornified envelope-like proline-rich 1 protein-coding LELP1 late cornified envelope-like proline-rich 1 O late cornified envelope-like proline-rich protein 1|novel small proline rich protein|novel small proline-rich protein 20121230 -9606 149041 RC3H1 RP5-1198E17.5 RNF198|ROQUIN HGNC:29434|MIM:609424|Ensembl:ENSG00000135870|HPRD:13913|Vega:OTTHUMG00000037275 1 1q25.1 ring finger and CCCH-type domains 1 protein-coding RC3H1 ring finger and CCCH-type domains 1 O RING finger and C3H zinc finger protein 1|RING finger protein 198|ring finger and CCCH-type zinc finger domains 1|roquin 20121230 -9606 149047 MGC27382 - - - 1 1p31.1 uncharacterized MGC27382 miscRNA - - - - 20121230 -9606 149069 DCDC2B - - HGNC:32576|Ensembl:ENSG00000222046|Vega:OTTHUMG00000005741 1 1p35.1 doublecortin domain containing 2B protein-coding DCDC2B doublecortin domain containing 2B O doublecortin domain-containing protein 2B 20121230 -9606 149076 ZNF362 RP11-415J8.1 RN|lin-29 HGNC:18079|Ensembl:ENSG00000160094|HPRD:13394|Vega:OTTHUMG00000004124 1 1p35.1 zinc finger protein 362 protein-coding ZNF362 zinc finger protein 362 O rotund homolog 20121230 -9606 149086 LOC149086 - - - 1 1p35.2 ornithine decarboxylase 1 pseudogene pseudo - - - - 20121230 -9606 149095 DCST1 RP11-307C12.10-003 - HGNC:26539|Ensembl:ENSG00000163357|HPRD:08733|Vega:OTTHUMG00000041314 1 1q22 DC-STAMP domain containing 1 protein-coding DCST1 DC-STAMP domain containing 1 O DC-STAMP domain-containing protein 1 20121230 -9606 149111 CNIH3 RP11-3L21.1 CNIH-3 HGNC:26802|Ensembl:ENSG00000143786|HPRD:08799|Vega:OTTHUMG00000037634 1 1q42.12 cornichon homolog 3 (Drosophila) protein-coding CNIH3 cornichon homolog 3 (Drosophila) O protein cornichon homolog 3 20121230 -9606 149134 LOC149134 - - HPRD:14084 1 1q44 uncharacterized LOC149134 miscRNA - - - - 20121230 -9606 149175 MANEAL - RP11-109P14.3 HGNC:26452|Ensembl:ENSG00000185090|HPRD:08713|Vega:OTTHUMG00000004317 1 1p34.3 mannosidase, endo-alpha-like protein-coding MANEAL mannosidase, endo-alpha-like O glycoprotein endo-alpha-1,2-mannosidase-like protein 20121230 -9606 149194 LOC149194 - - - 1 1p36.13 uncharacterized LOC149194 unknown - - - - 20120508 -9606 149224 RPS7P4 - RPS7_1_61 HGNC:36000 1 1p31.3 ribosomal protein S7 pseudogene 4 pseudo RPS7P4 ribosomal protein S7 pseudogene 4 O - 20121230 -9606 149233 IL23R - - HGNC:19100|MIM:607562|Ensembl:ENSG00000162594|HPRD:16249|Vega:OTTHUMG00000009092 1 1p31.3 interleukin 23 receptor protein-coding IL23R interleukin 23 receptor O IL-23 receptor|interleukin-23 receptor 20121230 -9606 149281 METTL11B RP11-297H3.1 C1orf184|HOMT1B|NTM1B HGNC:31932|Ensembl:ENSG00000203740|Vega:OTTHUMG00000035959 1 1q24.2 methyltransferase like 11B protein-coding METTL11B methyltransferase like 11B O X-Pro-Lys N-terminal protein methyltransferase 1B|alpha N-terminal protein methyltransferase 1B|methyltransferase-like protein 11B 20121230 -9606 149297 FAM78B RP11-375H19.1 - HGNC:13495|Ensembl:ENSG00000188859|HPRD:18557|Vega:OTTHUMG00000034705 1 1q24.1 family with sequence similarity 78, member B protein-coding FAM78B family with sequence similarity 78, member B O protein FAM78B 20121230 -9606 149345 SHISA4 UNQ583/PRO1153 C1orf40|TMEM58 HGNC:27139|Ensembl:ENSG00000198892|HPRD:12729|Vega:OTTHUMG00000035807 1 1q32.1 shisa homolog 4 (Xenopus laevis) protein-coding SHISA4 shisa homolog 4 (Xenopus laevis) O protein shisa-4|transmembrane protein 58 20121230 -9606 149351 LOC149351 - - - 1 1p22.2 uncharacterized LOC149351 unknown - - - - 20121230 -9606 149371 EXOC8 - EXO84|Exo84p|SEC84 HGNC:24659|Ensembl:ENSG00000116903|HPRD:09943|Vega:OTTHUMG00000038025 1 1q42.2 exocyst complex component 8 protein-coding EXOC8 exocyst complex component 8 O exocyst complex 84 kDa subunit|exocyst complex 84-kDa subunit 20121230 -9606 149373 LOC149373 - - - 1 1q42.2 uncharacterized LOC149373 protein-coding - - - uncharacterized protein LOC149373 20121230 -9606 149401 LOC149401 - - - 1 1q32.1 uncharacterized LOC149401 protein-coding - - - - 20120909 -9606 149420 PDIK1L RP11-96L14.4 CLIK1L|STK35L2 HGNC:18981|MIM:610785|Ensembl:ENSG00000175087|HPRD:15110|Vega:OTTHUMG00000007511 1 1p36.11 PDLIM1 interacting kinase 1 like protein-coding PDIK1L PDLIM1 interacting kinase 1 like O PDLIM1-interacting kinase 1-like|casein kinase|serine/threonine-protein kinase PDIK1L 20121230 -9606 149428 BNIPL RP11-316M1.7 BNIP-S|BNIPL-1|BNIPL-2|BNIPL1|BNIPL2|BNIPS|PP753 HGNC:16976|MIM:611275|Ensembl:ENSG00000163141|HPRD:16557|Vega:OTTHUMG00000035157 1 1q21.3 BCL2/adenovirus E1B 19kD interacting protein like protein-coding BNIPL BCL2/adenovirus E1B 19kD interacting protein like O BNIP-2 similar|bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein 20121230 -9606 149461 CLDN19 - HOMG5 HGNC:2040|MIM:610036|Ensembl:ENSG00000164007|HPRD:10834|Vega:OTTHUMG00000007524 1 1p34.2 claudin 19 protein-coding CLDN19 claudin 19 O claudin-19 20121230 -9606 149465 WDR65 - VWS2 HGNC:26485|MIM:614259|Ensembl:ENSG00000243710|HPRD:08717|Vega:OTTHUMG00000007285 1 1p34.2 WD repeat domain 65 protein-coding WDR65 WD repeat domain 65 O WD repeat-containing protein 65 20121230 -9606 149466 C1orf210 - - HGNC:28755|Ensembl:ENSG00000253313|HPRD:14677|Vega:OTTHUMG00000007289 1 1p34.2 chromosome 1 open reading frame 210 protein-coding C1orf210 chromosome 1 open reading frame 210 O putative uncharacterized protein C1orf210 20121230 -9606 149473 CCDC24 - RP5-1198O20.2 HGNC:28688|Ensembl:ENSG00000159214|HPRD:14636|Vega:OTTHUMG00000008299 1 1p34.1 coiled-coil domain containing 24 protein-coding CCDC24 coiled-coil domain containing 24 O coiled-coil domain-containing protein 24 20121230 -9606 149478 BTBD19 RP11-269F19.7 - HGNC:27145|Ensembl:ENSG00000222009|Vega:OTTHUMG00000008493 1 1p34.1 BTB (POZ) domain containing 19 protein-coding BTBD19 BTB (POZ) domain containing 19 O BTB/POZ domain-containing protein 19|novel BTB domain containing protein 20121230 -9606 149483 CCDC17 RP4-697E16.4 - HGNC:26574|Ensembl:ENSG00000159588|HPRD:08155|Vega:OTTHUMG00000007822 1 1p34.1 coiled-coil domain containing 17 protein-coding CCDC17 coiled-coil domain containing 17 O coiled-coil domain-containing protein 17 20121230 -9606 149499 LRRC71 - C1orf92|RP11-356J7.1 HGNC:26556|Ensembl:ENSG00000160838|HPRD:08737|Vega:OTTHUMG00000041298 1 1q23.1 leucine rich repeat containing 71 protein-coding LRRC71 leucine rich repeat containing 71 O leucine-rich repeat-containing protein 71|leucine-rich repeat-containing protein C10orf92 20121230 -9606 149501 KRT8P45 - - HGNC:39879 1 1q23.1 keratin 8 pseudogene 45 pseudo KRT8P45 keratin 8 pseudogene 45 O - 20121230 -9606 149563 C1orf64 - ERRF|RP11-5P18.4 HGNC:28339|Ensembl:ENSG00000183888|HPRD:14492|Vega:OTTHUMG00000009523 1 1p36.13 chromosome 1 open reading frame 64 protein-coding C1orf64 chromosome 1 open reading frame 64 O ER-related factor|uncharacterized protein C1orf64 20121230 -9606 149603 RNF187 - RACO-1|RACO1 HGNC:27146|MIM:613754|Ensembl:ENSG00000168159|Vega:OTTHUMG00000040043 1 1q42.13 ring finger protein 187 protein-coding RNF187 ring finger protein 187 O E3 ubiquitin-protein ligase RNF187|RING domain AP1 coactivator 1|protein RNF187 20121230 -9606 149620 CHIAP2 RP11-165H20.1 - HGNC:44463|HPRD:12595 1 1p13.2 chitinase, acidic pseudogene 2 pseudo CHIAP2 chitinase, acidic pseudogene 2 O - 20121230 -9606 149628 PYHIN1 - IFIX|RP11-520H16.1 HGNC:28894|MIM:612677|Ensembl:ENSG00000163564|HPRD:09999|Vega:OTTHUMG00000037109 1 1q23.1 pyrin and HIN domain family, member 1 protein-coding PYHIN1 pyrin and HIN domain family, member 1 O interferon-inducible protein X|pyrin and HIN domain-containing protein 1 20121230 -9606 149643 C1orf227 HSD44 - HGNC:33709|Ensembl:ENSG00000185523|HPRD:18558|Vega:OTTHUMG00000036920 1 1q32.3 chromosome 1 open reading frame 227 protein-coding C1orf227 chromosome 1 open reading frame 227 O UPF0732 protein C1orf227 20121230 -9606 149647 FAM71A - RP11-338C15.4 HGNC:26541|Ensembl:ENSG00000162771|HPRD:08735|Vega:OTTHUMG00000041084 1 1q32.3 family with sequence similarity 71, member A protein-coding FAM71A family with sequence similarity 71, member A O protein FAM71A 20121230 -9606 149650 FLJ32154 RP11-93B14.6 - HPRD:08121 20 20q13.33 uncharacterized protein FLJ32154 unknown - - - uncharacterized protein LOC149650 20121230 -9606 149684 LOC149684 - - - 20 20q12 uncharacterized LOC149684 protein-coding - - - - 20120508 -9606 149685 ADIG RP5-1100H13.2 SMAF1 HGNC:28606|MIM:611396|Ensembl:ENSG00000182035|HPRD:18068|Vega:OTTHUMG00000032451 20 20q11.23 adipogenin protein-coding ADIG adipogenin O adipogenesis associated|small adipocyte factor 1 (SMAF1) 20121230 -9606 149699 GTSF1L RP5-1028D15.3 C20orf65|FAM112A|dJ1028D15.4 HGNC:16198|Ensembl:ENSG00000124196|HPRD:12778|Vega:OTTHUMG00000032510 20 20q13.12 gametocyte specific factor 1-like protein-coding GTSF1L gametocyte specific factor 1-like O family with sequence similarity 112, member A|gametocyte-specific factor 1-like 20121230 -9606 149703 LOC149703 - - - 20 20q13.12 uncharacterized LOC149703 unknown - - - - 20120508 -9606 149708 WFDC5 UNQ3036/PRO9842 PRG5|WAP1|dJ211D12.5 HGNC:20477|MIM:605161|Ensembl:ENSG00000175121|Vega:OTTHUMG00000046411 20 20q13.12 WAP four-disulfide core domain 5 protein-coding WFDC5 WAP four-disulfide core domain 5 O WAP four-disulfide core domain protein 5|p53-responsive gene 5 protein|protease inhibitor WAP1|putative protease inhibitor WAP1 20121230 -9606 149773 APCDD1L-AS1 - - HGNC:27152 20 20q13.32 APCDD1L antisense RNA 1 (head to head) miscRNA APCDD1L-AS1 APCDD1L antisense RNA 1 (head to head) O - 20121230 -9606 149775 GNAS-AS1 - GNAS-AS|GNAS1AS|GNASAS|NCRNA00075|NESP-AS|NESPAS|SANG HGNC:24872|MIM:610540 20 20q13.32 GNAS antisense RNA 1 miscRNA GNAS-AS1 GNAS antisense RNA 1 O - 20121230 -9606 149830 PRNT RP5-1068H6.5 M8 HGNC:18046|HPRD:14086 20 20p13 prion protein (testis specific) miscRNA PRNT prion protein (testis specific) O - 20121230 -9606 149837 LINC00654 RP5-1022P6.6 - HGNC:27154 20 20p12.3 long intergenic non-protein coding RNA 654 miscRNA LINC00654 long intergenic non-protein coding RNA 654 O - 20121230 -9606 149840 C20orf196 RP4-784N16.1 - HGNC:26318|Ensembl:ENSG00000171984|HPRD:08681|Vega:OTTHUMG00000031813 20 20p12.3 chromosome 20 open reading frame 196 protein-coding C20orf196 chromosome 20 open reading frame 196 O uncharacterized protein C20orf196 20121230 -9606 149844 LOC149844 - - - 20 20p12.3 synaptotagmin binding, cytoplasmic RNA interacting protein pseudogene pseudo - - - - 20121230 -9606 149934 NCOR1P1 - C20orf191|bB329D4.2 HGNC:16724 20 20p11.1 nuclear receptor corepressor 1 pseudogene 1 pseudo NCOR1P1 nuclear receptor corepressor 1 pseudogene 1 O - 20121230 -9606 149935 LOC149935 RP5-854E16.2 - - 20 20q11.21 CDK5 regulatory subunit associated protein 3 pseudogene pseudo - - - - 20121230 -9606 149950 LOC149950 RP11-410N8.4 - HPRD:17304 20 20q11.21 uncharacterized LOC149950 miscRNA - - - - 20121230 -9606 149951 COMMD7 RP11-503P21.3 C20orf92|dJ1085F17.3 HGNC:16223|Ensembl:ENSG00000149600|HPRD:13085|Vega:OTTHUMG00000032229 20 20q11.21 COMM domain containing 7 protein-coding COMMD7 COMM domain containing 7 O COMM domain-containing protein 7 20121230 -9606 149954 BPIFB4 - C20orf186|LPLUNC4|RY2G5|dJ726C3.5 HGNC:16179|Ensembl:ENSG00000186191|HPRD:16645|Vega:OTTHUMG00000032235 20 20q11.21 BPI fold containing family B, member 4 protein-coding BPIFB4 BPI fold containing family B, member 4 O BPI fold-containing family B member 4|ligand-binding protein RY2G5|likely ortholog of rat probable ligand-binding protein RY2G5|long palate, lung and nasal epithelium carcinoma associated 4|long palate, lung and nasal epithelium carcinoma-associated protein 4 20121230 -9606 149986 LSM14B FT005 C20orf40|FAM61B|LSM13|RAP55B|bA11M20.3 HGNC:15887|Ensembl:ENSG00000149657|HPRD:12768|Vega:OTTHUMG00000032901 20 20q13.33 LSM14B, SCD6 homolog B (S. cerevisiae) protein-coding LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) O LSM14 homolog B|RNA-associated protein 55B|family with sequence similarity 61, member B|hRAP55B|protein LSM14 homolog B 20121230 -9606 149992 ANKRD30BP2 - C21orf99|CT85|CTSP-1|CTSP1 HGNC:16620|HPRD:10779 21 21q11.2 ankyrin repeat domain 30B pseudogene 2 pseudo ANKRD30BP2 ankyrin repeat domain 30B pseudogene 2 O - 20121230 -9606 149998 LIPI PRED5 CT17|LPDL|PLA1C HGNC:18821|MIM:609252|Ensembl:ENSG00000188992|HPRD:14193|Vega:OTTHUMG00000074258 21 21q11.2 lipase, member I protein-coding LIPI lipase, member I O LPD lipase|cancer/testis antigen 17|lipase member I|mPA-PLA1 beta|membrane-associated phosphatidic acid-selective phospholipase A1-beta|membrane-associated phospholipase A1 beta 7B+|membrane-associated phospholipase A1 beta deltaE2-3|membrane-associated phospholipase A1 beta deltaE5|membrane-associated phospholipase A1 beta deltaE6.1|membrane-associated phospholipase A1 beta deltaE7.2|membrane-associated phospholipase A1 beta deltaE8-9|membrane-associated phospholipase A1 beta fl 20121230 -9606 150000 ABCC13 - C21orf73|PRED6 HGNC:16022|MIM:608835|HPRD:10586 21 21q11.2 ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene pseudo ABCC13 ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene O ATP-binding cassette protein C13 20121230 -9606 150005 LOC150005 - - - 21 21q21.1 uncharacterized LOC150005 unknown - - - - 20120508 -9606 150051 LOC150051 - - - 21 21q22.11 uncharacterized LOC150051 unknown - - - - 20121230 -9606 150082 LCA5L - C21orf13 HGNC:1255|Ensembl:ENSG00000157578|HPRD:10742|Vega:OTTHUMG00000066280 21 21q22.2 Leber congenital amaurosis 5-like protein-coding LCA5L Leber congenital amaurosis 5-like O Lebercilin-like protein|leber congenital amaurosis 5-like protein 20121230 -9606 150084 IGSF5 - GSF5|JAM4 HGNC:5952|MIM:610638|Ensembl:ENSG00000183067|Vega:OTTHUMG00000086724 21 21q22.2 immunoglobulin superfamily, member 5 protein-coding IGSF5 immunoglobulin superfamily, member 5 O JAM-4|immunoglobulin superfamily 5 like|immunoglobulin superfamily member 5|junctional adhesion molecule 4 20121230 -9606 150094 SIK1 - MSK|SIK|SNF1LK HGNC:11142|MIM:605705|Ensembl:ENSG00000142178|HPRD:09301|Vega:OTTHUMG00000086874 21 21q22.3 salt-inducible kinase 1 protein-coding SIK1 salt-inducible kinase 1 O SIK-1|SNF1-like kinase|myocardial SNF1-like kinase|salt-inducible protein kinase 1|serine/threonine protein kinase|serine/threonine-protein kinase SIK1|serine/threonine-protein kinase SNF1-like kinase 1|serine/threonine-protein kinase SNF1LK 20121230 -9606 150135 LINC00479 PRED76 C21orf129 HGNC:19727|HPRD:10741 21 21q22.3 long intergenic non-protein coding RNA 479 miscRNA LINC00479 long intergenic non-protein coding RNA 479 O - 20121230 -9606 150142 ZNF295-AS1 PRED87 C21orf121|NCRNA00318 HGNC:23130|HPRD:10735 21 21q22.3 ZNF295 antisense RNA 1 miscRNA ZNF295-AS1 ZNF295 antisense RNA 1 O - 20121230 -9606 150147 C21orf128 - - HGNC:23821|HPRD:10740 21 21q22.3 chromosome 21 open reading frame 128 miscRNA C21orf128 chromosome 21 open reading frame 128 O - 20121230 -9606 150159 SLC9B1 - NHA1|NHEDC1 HGNC:24244|MIM:611527|Ensembl:ENSG00000164037|HPRD:11240|Vega:OTTHUMG00000161114 4 4q24 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 protein-coding SLC9B1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 O NHE domain-containing protein 1|Na(+)/H(+) exchanger-like domain-containing protein 1|sodium/hydrogen exchanger 9B1|sodium/hydrogen exchanger-like domain-containing protein 1|solute carrier family 9, subfamily B (cation proton antiporter 2), member 1 20121230 -9606 150160 CCT8L2 - CESK1 HGNC:15553|Ensembl:ENSG00000198445|HPRD:16708|Vega:OTTHUMG00000141302 22 22q11.1 chaperonin containing TCP1, subunit 8 (theta)-like 2 protein-coding CCT8L2 chaperonin containing TCP1, subunit 8 (theta)-like 2 O T-complex protein 1|putative T-complex protein 1 subunit theta-like 2 20121230 -9606 150165 XKR3 - XRG3|XTES HGNC:28778|MIM:611674|Ensembl:ENSG00000172967|HPRD:14692|Vega:OTTHUMG00000143726 22 22q11.1 XK, Kell blood group complex subunit-related family, member 3 protein-coding XKR3 XK, Kell blood group complex subunit-related family, member 3 O X Kell blood group precursor-related family, member 3|XK-related protein 3|expressed in testis|x Kell blood group-related 3 20121230 -9606 150185 LOC150185 - - - 22 22q11.21 uncharacterized LOC150185 miscRNA - - - - 20121230 -9606 150197 LOC150197 - - - 22 22q11.21 uncharacterized LOC150197 miscRNA - - - - 20121230 -9606 150209 AIFM3 - AIFL HGNC:26398|Ensembl:ENSG00000183773|HPRD:08085|Vega:OTTHUMG00000150804 22 22q11.21 apoptosis-inducing factor, mitochondrion-associated, 3 protein-coding AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 O apoptosis-inducing factor 3|apoptosis-inducing factor like 20121230 -9606 150221 RIMBP3C - RIM-BP3.3|RIMBP3.3 HGNC:33892|MIM:612701|Ensembl:ENSG00000183246|Vega:OTTHUMG00000150825 22 22q11.21 RIMS binding protein 3C protein-coding RIMBP3C RIMS binding protein 3C O RIM-BP3.C|RIMS binding protein 3.3|RIMS-binding protein 3.3|RIMS-binding protein 3C 20121230 -9606 150223 YDJC - - HGNC:27158|Ensembl:ENSG00000161179|HPRD:18559|Vega:OTTHUMG00000150822 22 22q11.21 YdjC homolog (bacterial) protein-coding YDJC YdjC homolog (bacterial) O UPF0249 protein ydjC homolog 20121230 -9606 150244 ZDHHC8P1 - ZDHHC8P HGNC:26461|HPRD:08104 22 22q11.23 zinc finger, DHHC-type containing 8 pseudogene 1 pseudo ZDHHC8P1 zinc finger, DHHC-type containing 8 pseudogene 1 O - 20121230 -9606 150248 C22orf15 - N27C7-3 HGNC:15558|Ensembl:ENSG00000169314|HPRD:08778|Vega:OTTHUMG00000150740 22 22q11.23 chromosome 22 open reading frame 15 protein-coding C22orf15 chromosome 22 open reading frame 15 O protein N27C7-3|uncharacterized protein C22orf15 20121230 -9606 150274 HSCB RP3-366L4.2 DNAJC20|HSC20|JAC1|dJ366L4.2 HGNC:28913|MIM:608142|Ensembl:ENSG00000100209|HPRD:16289|Vega:OTTHUMG00000151092 22 22q12.1 HscB iron-sulfur cluster co-chaperone homolog (E. coli) protein-coding HSCB HscB iron-sulfur cluster co-chaperone homolog (E. coli) O DnaJ (Hsp40) homolog, subfamily C, member 20|J-type co-chaperone HSC20|dnaJ homolog subfamily C member 20|iron-sulfur cluster co-chaperone protein HscB, mitochondrial 20121230 -9606 150275 CCDC117 CTA-292E10.4 dJ366L4.1 HGNC:26599|Ensembl:ENSG00000159873|HPRD:08167|Vega:OTTHUMG00000151091 22 22q12.1 coiled-coil domain containing 117 protein-coding CCDC117 coiled-coil domain containing 117 O coiled-coil domain-containing protein 117 20121230 -9606 150280 HORMAD2 - - HGNC:28383|Ensembl:ENSG00000176635|HPRD:13668|Vega:OTTHUMG00000150881 22 22q12.2 HORMA domain containing 2 protein-coding HORMAD2 HORMA domain containing 2 O HORMA domain-containing protein 2 20121230 -9606 150290 DUSP18 - DSP18|DUSP20|LMWDSP20|bK963H5.1 HGNC:18484|MIM:611446|Ensembl:ENSG00000167065|HPRD:13253|Vega:OTTHUMG00000151115 22 22q12.2 dual specificity phosphatase 18 protein-coding DUSP18 dual specificity phosphatase 18 O LMW-DSP20|dual specificity protein phosphatase 18|low molecular weight dual specificity phosphatase 20 20121230 -9606 150291 MORC2-AS1 - C22orf27|NCRNA00325 HGNC:26662|HPRD:08191 22 22q12.2 MORC2 antisense RNA 1 miscRNA MORC2-AS1 MORC2 antisense RNA 1 O - 20121230 -9606 150297 C22orf42 RP1-127L4.6 dJ90G24.6 HGNC:27160|Ensembl:ENSG00000205856|HPRD:14087|Vega:OTTHUMG00000030380 22 22q12.3 chromosome 22 open reading frame 42 protein-coding C22orf42 chromosome 22 open reading frame 42 O uncharacterized protein C22orf42 20121230 -9606 150350 ENTHD1 RP1-172B20.3 CACNA1I|dJ370M22.3 HGNC:26352|Ensembl:ENSG00000176177|HPRD:08063|Vega:OTTHUMG00000151098 22 22q13.1 ENTH domain containing 1 protein-coding ENTHD1 ENTH domain containing 1 O ENTH domain-containing protein 1|dJ370M22.3 (EPSIN 2B)|epsin-2B 20121230 -9606 150353 DNAJB7 - DJ5|HSC3 HGNC:24986|MIM:611336|Ensembl:ENSG00000172404|HPRD:07010|Vega:OTTHUMG00000151202 22 22q13.2 DnaJ (Hsp40) homolog, subfamily B, member 7 protein-coding DNAJB7 DnaJ (Hsp40) homolog, subfamily B, member 7 O dnaJ homolog subfamily B member 7|novel DnaJ domain protein 20121230 -9606 150356 CHADL RP4-756G23.1 SLRR4B HGNC:25165|Ensembl:ENSG00000100399|Vega:OTTHUMG00000150936 22 22q13.2 chondroadherin-like protein-coding CHADL chondroadherin-like O chondroadherin-like protein 20121230 -9606 150365 MEI1 RP5-821D11.2 - HGNC:28613|MIM:608797|Ensembl:ENSG00000167077|Vega:OTTHUMG00000030083 22 22q13.2 meiosis inhibitor 1 protein-coding MEI1 meiosis inhibitor 1 O meiosis defective 1|meiosis defective protein 1|meiosis inhibitor protein 1 20121230 -9606 150368 FAM109B CTA-250D10.2 IPIP27B|Ses2 HGNC:27161|MIM:614240|Ensembl:ENSG00000177096|HPRD:17305|Vega:OTTHUMG00000151285 22 22q13.2 family with sequence similarity 109, member B protein-coding FAM109B family with sequence similarity 109, member B O 27 kDa inositol polyphosphate phosphatase interacting protein B|sesquipedalian-2 20121230 -9606 150372 NFAM1 CTA-126B4.4 CNAIP|bK126B4.4 HGNC:29872|MIM:608740|Ensembl:ENSG00000235568|HPRD:16380|Vega:OTTHUMG00000150923 22 22q13.2 NFAT activating protein with ITAM motif 1 protein-coding NFAM1 NFAT activating protein with ITAM motif 1 O NFAT activation molecule 1|NFAT-activating protein with ITAM motif 1|calcinerin/NFAT-activating ITAM-containing protein|calcineurin/NFAT-activating ITAM-containing protein 20121230 -9606 150378 FLJ30901 - - - 22 22q13.31 uncharacterized protein FLJ30901 protein-coding - - - uncharacterized protein LOC150378 20111025 -9606 150379 PNPLA5 RP3-388M5.5 GS2L|dJ388M5|dJ388M5.4 HGNC:24888|MIM:611589|Ensembl:ENSG00000100341|HPRD:17870|Vega:OTTHUMG00000030779 22 22q13.31 patatin-like phospholipase domain containing 5 protein-coding PNPLA5 patatin-like phospholipase domain containing 5 O GS2-like protein|patatin-like phospholipase domain-containing protein 5 20121230 -9606 150381 LOC150381 - - - 22 22q13.31 uncharacterized LOC150381 miscRNA - - - - 20121230 -9606 150383 CDPF1 - C22orf40 HGNC:33710|Ensembl:ENSG00000205643|HPRD:11241|Vega:OTTHUMG00000030672 22 22q13.31 cysteine-rich, DPF motif domain containing 1 protein-coding CDPF1 cysteine-rich, DPF motif domain containing 1 O UPF0595 protein C22orf40|cysteine-rich DPF motif domain-containing protein 1 20121230 -9606 150384 CN5H6.4 - - - 22 22q13.31 uncharacterized LOC150384 miscRNA - - - - 20121230 -9606 150417 LOC150417 - - - 22 22q13.33 small nuclear ribonucleoprotein polypeptide A' pseudogene pseudo - - - - 20121230 -9606 150465 TTL - - HGNC:21586|MIM:608291|Ensembl:ENSG00000114999|HPRD:12206|Vega:OTTHUMG00000131316 2 2q13 tubulin tyrosine ligase protein-coding TTL tubulin tyrosine ligase O 2410003M22Rik|tubulin--tyrosine ligase|tubulin-tyrosine ligase 20121230 -9606 150468 CKAP2L - - HGNC:26877|Ensembl:ENSG00000169607|HPRD:08285|Vega:OTTHUMG00000131313 2 2q13 cytoskeleton associated protein 2-like protein-coding CKAP2L cytoskeleton associated protein 2-like O cytoskeleton-associated protein 2-like 20121230 -9606 150472 CBWD2 - - HGNC:17907|MIM:611079|Ensembl:ENSG00000136682|HPRD:16687|Vega:OTTHUMG00000131360 2 2q13 COBW domain containing 2 protein-coding CBWD2 COBW domain containing 2 O COBW domain-containing protein 2|cobalamin synthase W domain-containing protein 2|cobalamin synthetase W domain-containing protein 2 20121230 -9606 150478 bA395L14.12 RP11-395L14.12-001 - - 2 2q14.1 small nuclear ribonucleoprotein polypeptide A' pseudogene pseudo - - - - 20121230 -9606 150483 TEKT4 - - HGNC:31012|Ensembl:ENSG00000163060|HPRD:14518|Vega:OTTHUMG00000130396 2 2q11.1 tektin 4 protein-coding TEKT4 tektin 4 O tektin-4 20121230 -9606 150519 LOC150519 - - - 2 2q21.1 uncharacterized LOC150519 unknown - - - - 20120511 -9606 150527 TISP43 - - - 2 2q21.1 uncharacterized LOC150527 pseudo - - - - 20121230 -9606 150538 SATB2-AS1 - - HGNC:26490|HPRD:08118 2 2q33.1 SATB2 antisense RNA 1 miscRNA SATB2-AS1 SATB2 antisense RNA 1 O - 20121230 -9606 150554 YWHAZP2 - - HGNC:31078 2 2q14.3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 2 pseudo YWHAZP2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 2 O - 20121230 -9606 150568 LOC150568 - - - 2 2q12.1 uncharacterized LOC150568 miscRNA - - - - 20121230 -9606 150572 SMYD1 - BOP|KMT3D|ZMYND18|ZMYND22 HGNC:20986|MIM:606846|Ensembl:ENSG00000115593|HPRD:06025|Vega:OTTHUMG00000155045 2 2p11.2 SET and MYND domain containing 1 protein-coding SMYD1 SET and MYND domain containing 1 O CD8 beta opposite|SET and MYND domain-containing protein 1|zinc finger, MYND domain containing 18 20121230 -9606 150577 LOC150577 - - - 2 2q11.2 uncharacterized LOC150577 miscRNA - - - - 20121230 -9606 150590 C2orf15 - - HGNC:28436|Ensembl:ENSG00000241962|HPRD:12806|Vega:OTTHUMG00000130635 2 2q11.2 chromosome 2 open reading frame 15 protein-coding C2orf15 chromosome 2 open reading frame 15 O uncharacterized protein C2orf15 20121230 -9606 150596 FLJ32955 - - HPRD:08152 2 2q23.3 uncharacterized protein FLJ32955 unknown - - - - 20121230 -9606 150622 LOC150622 - - HPRD:08087 2 2p25.2 uncharacterized LOC150622 miscRNA - - - - 20121230 -9606 150677 OTOS - OTOSP HGNC:22644|MIM:607877|Ensembl:ENSG00000178602|HPRD:09714|Vega:OTTHUMG00000133351 2 2q37.3 otospiralin protein-coding OTOS otospiralin O - 20121230 -9606 150678 MYEOV2 - - HGNC:21314|Ensembl:ENSG00000172428|HPRD:17306|Vega:OTTHUMG00000133352 2 2q37.3 myeloma overexpressed 2 protein-coding MYEOV2 myeloma overexpressed 2 O helicase/primase complex protein|myeloma-overexpressed gene 2 protein 20121230 -9606 150681 OR6B3 - OR6B3P|OR6B3Q HGNC:15042|Ensembl:ENSG00000178586|HPRD:17772|Vega:OTTHUMG00000152399 2 2q37.3 olfactory receptor, family 6, subfamily B, member 3 protein-coding OR6B3 olfactory receptor, family 6, subfamily B, member 3 O olfactory receptor 6B3|olfactory receptor OR2-2|olfactory receptor, family 6, subfamily B, member 3 pseudogene 20121230 -9606 150684 COMMD1 - C2orf5|MURR1 HGNC:23024|MIM:607238|Ensembl:ENSG00000173163|HPRD:06253|Vega:OTTHUMG00000129445 2 2p15 copper metabolism (Murr1) domain containing 1 protein-coding COMMD1 copper metabolism (Murr1) domain containing 1 O COMM domain-containing protein 1|copper metabolism gene MURR1|protein Murr1 20121230 -9606 150696 PROM2 UNQ2521/PRO6014 PROML2 HGNC:20685|Ensembl:ENSG00000155066|HPRD:17912|Vega:OTTHUMG00000130393 2 2q11.1 prominin 2 protein-coding PROM2 prominin 2 O hPROML2|prominin-2|prominin-like protein 2|prominin-related protein 20121230 -9606 150709 ANKAR - - HGNC:26350|MIM:609803|Ensembl:ENSG00000151687|Vega:OTTHUMG00000154398 2 2q32.2 ankyrin and armadillo repeat containing protein-coding ANKAR ankyrin and armadillo repeat containing O ankyrin and armadillo repeat-containing protein 20121230 -9606 150726 FBXO41 - FBX41 HGNC:29409|MIM:609108|Ensembl:ENSG00000163013|Vega:OTTHUMG00000164127 2 2p13.2 F-box protein 41 protein-coding FBXO41 F-box protein 41 O F-box only protein 41 20121230 -9606 150737 TTC30B - IFT70|fleer HGNC:26425|Ensembl:ENSG00000196659|HPRD:08706|Vega:OTTHUMG00000154166 2 2q31.2 tetratricopeptide repeat domain 30B protein-coding TTC30B tetratricopeptide repeat domain 30B O TPR repeat protein 30B|tetratricopeptide repeat protein 30B 20121230 -9606 150759 LINC00342 - NCRNA00342 HGNC:42470 2 2q11.2 long intergenic non-protein coding RNA 342 miscRNA LINC00342 long intergenic non-protein coding RNA 342 O - 20121230 -9606 150763 GPAT2 - CT123 HGNC:27168|Ensembl:ENSG00000186281|HPRD:14089|Vega:OTTHUMG00000155208 2 2q11.1 glycerol-3-phosphate acyltransferase 2, mitochondrial protein-coding GPAT2 glycerol-3-phosphate acyltransferase 2, mitochondrial O GPAT-2|cancer/testis antigen 123|xGPAT1 20121230 -9606 150771 ITPRIPL1 - KIAA1754L HGNC:29371|Ensembl:ENSG00000198885|HPRD:13893|Vega:OTTHUMG00000155230 2 2q11.2 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 protein-coding ITPRIPL1 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 O inositol 1,4,5-triphosphate receptor interacting protein-like 1|inositol 1,4,5-triphosphate receptor-interacting protein-like 1|inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 20121230 -9606 150776 LOC150776 - - - 2 2q21.1 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene pseudo - - - - 20121230 -9606 150786 WTH3DI - - - 2 2q21.1 RAB6C-like protein-coding - - - - 20121230 -9606 150864 FAM117B - ALS2CR13 HGNC:14440|Ensembl:ENSG00000138439|HPRD:12445|Vega:OTTHUMG00000154550 2 2q33.2 family with sequence similarity 117, member B protein-coding FAM117B family with sequence similarity 117, member B O amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13|amyotrophic lateral sclerosis 2 chromosomal region candidate gene 13 protein|protein FAM117B 20121230 -9606 150921 TCF23 - OUT|TCF-23|bHLHa24 HGNC:18602|MIM:609635|Ensembl:ENSG00000163792|HPRD:18734|Vega:OTTHUMG00000152031 2 2p23.3 transcription factor 23 protein-coding TCF23 transcription factor 23 O class A basic helix-loop-helix protein 24|class II basic helix-loop-helix protein TCF23 20121230 -9606 150928 PTMAP5 RP11-193G17.1 - HGNC:9628 13 13q31.1 prothymosin, alpha pseudogene 5 pseudo PTMAP5 prothymosin, alpha pseudogene 5 O - 20121230 -9606 150935 LOC150935 - - - 2 2q37.3 uncharacterized LOC150935 miscRNA - - - - 20121230 -9606 150946 GAREML HRIHFB2063 FAM59B HGNC:27172|Ensembl:ENSG00000157833|Vega:OTTHUMG00000151935 2 2p23.3 GRB2 associated, regulator of MAPK1-like protein-coding GAREML GRB2 associated, regulator of MAPK1-like O family with sequence similarity 59, member B|protein FAM59B 20121230 -9606 150947 PPIL1P1 - - HGNC:20865 2 2p23.3 peptidylprolyl isomerase (cyclophilin)-like 1 pseudogene 1 pseudo PPIL1P1 peptidylprolyl isomerase (cyclophilin)-like 1 pseudogene 1 O - 20121230 -9606 150962 PUS10 - CCDC139|DOBI HGNC:26505|MIM:612787|Ensembl:ENSG00000162927|HPRD:08126|Vega:OTTHUMG00000129423 2 2p16.1 pseudouridylate synthase 10 protein-coding PUS10 pseudouridylate synthase 10 O coiled-coil domain containing 139|coiled-coil domain-containing protein 139|pseudouridine synthase 10|psi55 synthase|putative tRNA pseudouridine synthase Pus10|tRNA pseudouridine 55 synthase|tRNA pseudouridylate synthase|tRNA-uridine isomerase 20121230 -9606 150967 PKI55 - - - 2 2q35 DKFZp434H1419 miscRNA - - - - 20121230 -9606 150992 LINC00309 - NCRNA00309 HGNC:25279 2 2p15 long intergenic non-protein coding RNA 309 miscRNA LINC00309 long intergenic non-protein coding RNA 309 O - 20121230 -9606 151009 LOC151009 - - HPRD:08239 2 2q13 uncharacterized LOC151009 miscRNA - - - - 20121230 -9606 151011 SEPT10 - - HGNC:14349|MIM:611737|Ensembl:ENSG00000186522|HPRD:15325|Vega:OTTHUMG00000154957 2 2q13 septin 10 protein-coding SEPT10 septin 10 O septin-10 20121230 -9606 151050 KANSL1L - C2orf67|MSL1v2 HGNC:26310|MIM:613833|Ensembl:ENSG00000144445|HPRD:08679|Vega:OTTHUMG00000154697 2 2q34 KAT8 regulatory NSL complex subunit 1-like protein-coding KANSL1L KAT8 regulatory NSL complex subunit 1-like O KAT8 regulatory NSL complex subunit 1-like protein|male-specific lethal 1 homolog 20121230 -9606 151056 PLB1 - PLB|PLB/LIP|hPLB HGNC:30041|MIM:610179|Ensembl:ENSG00000163803|HPRD:15141|Vega:OTTHUMG00000152014 2 2p23.2 phospholipase B1 protein-coding PLB1 phospholipase B1 O lysophospholipase|phospholipase A2|phospholipase B|phospholipase B/lipase|phospholipase B1, membrane-associated 20121230 -9606 151112 ZSWIM2 - MEX|ZZZ2 HGNC:30990|Ensembl:ENSG00000163012|HPRD:15902|Vega:OTTHUMG00000154259 2 2q32.1 zinc finger, SWIM-type containing 2 protein-coding ZSWIM2 zinc finger, SWIM-type containing 2 O E3 ubiquitin-protein ligase ZSWIM2|MEKK1-related protein X|ZZ-type zinc finger-containing protein 2|zinc finger SWIM domain-containing protein 2|zinc finger, SWIM domain containing 2 20121230 -9606 151121 LOC151121 - - - 2 2q21.1 uncharacterized LOC151121 unknown - - - - 20121230 -9606 151126 ZNF385B - ZFN533|ZNF533 HGNC:26332|MIM:612344|Ensembl:ENSG00000144331|HPRD:15823|Vega:OTTHUMG00000154559 2 2q31.2-q31.3 zinc finger protein 385B protein-coding ZNF385B zinc finger protein 385B O zinc finger protein 533 20121230 -9606 151171 LOC151171 - - - 2 2q37.3 uncharacterized LOC151171 miscRNA - - - - 20121230 -9606 151174 LOC151174 - - - 2 2q37.3 uncharacterized LOC151174 miscRNA - - - - 20121230 -9606 151176 FAM132B - C1QTNF15|CTRP15 HGNC:26727|Ensembl:ENSG00000178752|Vega:OTTHUMG00000152901 2 2q37.3 family with sequence similarity 132, member B protein-coding FAM132B family with sequence similarity 132, member B O myonectin|protein FAM132B 20121209 -9606 151188 ARL6IP6 - AIP-6|PFAAP1 HGNC:24048|Ensembl:ENSG00000177917|HPRD:12485|Vega:OTTHUMG00000131901 2 2q23.3 ADP-ribosylation-like factor 6 interacting protein 6 protein-coding ARL6IP6 ADP-ribosylation-like factor 6 interacting protein 6 O ADP-ribosylation factor-like protein 6-interacting protein 6|ARL-6-interacting protein 6|phosphonoformate immuno-associated protein 1|regulated by phosphonoformate 20121230 -9606 151194 METTL21A - FAM119A|HCA557b HGNC:30476|Ensembl:ENSG00000144401|HPRD:14090|Vega:OTTHUMG00000132934 2 2q33.3 methyltransferase like 21A protein-coding METTL21A methyltransferase like 21A O family with sequence similarity 119, member A|hepatocellular carcinoma-associated antigen 557b|methyltransferase-like protein 21A 20121230 -9606 151195 CCNYL1 - - HGNC:26868|Ensembl:ENSG00000163249|HPRD:08809|Vega:OTTHUMG00000132946 2 2q33.3 cyclin Y-like 1 protein-coding CCNYL1 cyclin Y-like 1 O cyclin-Y-like protein 1 20121230 -9606 151230 KLHL23 - DITHP HGNC:27506|Ensembl:ENSG00000213160|HPRD:11320|Vega:OTTHUMG00000132213 2 2q31.1 kelch-like 23 (Drosophila) protein-coding KLHL23 kelch-like 23 (Drosophila) O kelch-like protein 23 20121230 -9606 151234 SULT1C2P1 - SULT1C1P HGNC:33545 2 2q12.3 sulfotransferase family, cytosolic, 1C, member 2 pseudogene 1 pseudo SULT1C2P1 sulfotransferase family, cytosolic, 1C, member 2 pseudogene 1 O - 20121230 -9606 151242 PPP1R1C - IPP5 HGNC:14940|MIM:613240|Ensembl:ENSG00000150722|Vega:OTTHUMG00000154326 2 2q31.3 protein phosphatase 1, regulatory (inhibitor) subunit 1C protein-coding PPP1R1C protein phosphatase 1, regulatory (inhibitor) subunit 1C O PP1 inhibitor protein 5|inhibitor-5 of protein phosphatase 1|protein phosphatase 1 regulatory subunit 1A|protein phosphatase 1 regulatory subunit 1C 20121230 -9606 151246 SGOL2 - SGO2|TRIPIN HGNC:30812|MIM:612425|Ensembl:ENSG00000163535|HPRD:11555|Vega:OTTHUMG00000154535 2 2q33.1 shugoshin-like 2 (S. pombe) protein-coding SGOL2 shugoshin-like 2 (S. pombe) O shugoshin-2|shugoshin-like 2 20121230 -9606 151254 ALS2CR11 - - HGNC:14438|Ensembl:ENSG00000155754|HPRD:08687|Vega:OTTHUMG00000132830 2 2q33.1 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 protein-coding ALS2CR11 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 O amyotrophic lateral sclerosis 2 chromosomal region candidate gene 11 protein 20121230 -9606 151258 SLC38A11 - AVT2 HGNC:26836|Ensembl:ENSG00000169507|HPRD:08267|Vega:OTTHUMG00000132144 2 2q24.3 solute carrier family 38, member 11 protein-coding SLC38A11 solute carrier family 38, member 11 O putative sodium-coupled neutral amino acid transporter 11 20121230 -9606 151276 LOC151276 - - - 2 2q23.2 thioredoxin pseudogene pseudo - - - - 20121230 -9606 151278 CCDC140 - - HGNC:26514|Ensembl:ENSG00000163081|HPRD:08132|Vega:OTTHUMG00000133154 2 2q36.1 coiled-coil domain containing 140 protein-coding CCDC140 coiled-coil domain containing 140 O coiled-coil domain-containing protein 140 20121230 -9606 151295 SLC23A3 hCG_1811885 E2BP3|SVCT3|Yspl1 HGNC:20601|Ensembl:ENSG00000213901|HPRD:15350|Vega:OTTHUMG00000154616 2 2q35 solute carrier family 23 (nucleobase transporters), member 3 protein-coding SLC23A3 solute carrier family 23 (nucleobase transporters), member 3 O E2-binding protein 3|HPC E2-binding protein 3|Na(+)/L-ascorbic acid transporter 3|sodium-dependent vitamin C transporter 3|solute carrier family 23 member 3 20121230 -9606 151300 LINC00608 - - HGNC:27179 2 2q35 long intergenic non-protein coding RNA 608 miscRNA LINC00608 long intergenic non-protein coding RNA 608 O - 20121230 -9606 151306 GPBAR1 - BG37|GPCR19|GPR131|M-BAR|TGR5 HGNC:19680|MIM:610147|Ensembl:ENSG00000179921|HPRD:17050|Vega:OTTHUMG00000155203 2 2q35 G protein-coupled bile acid receptor 1 protein-coding GPBAR1 G protein-coupled bile acid receptor 1 O G-protein coupled bile acid receptor 1|G-protein coupled bile acid receptor BG37|G-protein coupled receptor GPCR19|hBG37|hGPCR19|membrane bile acid receptor|membrane-type receptor for bile acids 20121230 -9606 151313 FAHD2B - - HGNC:25318|Ensembl:ENSG00000144199|HPRD:13198|Vega:OTTHUMG00000130533 2 2q11.2 fumarylacetoacetate hydrolase domain containing 2B protein-coding FAHD2B fumarylacetoacetate hydrolase domain containing 2B O fumarylacetoacetate hydrolase domain-containing protein 2B 20121230 -9606 151325 MYADML - - HGNC:31019|HPRD:14793 2 2p22.3 myeloid-associated differentiation marker-like (pseudogene) pseudo MYADML myeloid-associated differentiation marker-like (pseudogene) O - 20121230 -9606 151354 FAM84A - NSE1|PP11517 HGNC:20743|MIM:611234|Ensembl:ENSG00000162981|HPRD:17647|Vega:OTTHUMG00000119093 2 2p24.3 family with sequence similarity 84, member A protein-coding FAM84A family with sequence similarity 84, member A O neurologic sensory protein 1|neurological/sensory 1|protein FAM84A 20121230 -9606 151393 FAM82A1 BLOCK18 FAM82A|PRO34163|PYST9371|RMD-2|RMD2|RMD4 HGNC:26567|MIM:611872|Ensembl:ENSG00000115841|HPRD:08741|Vega:OTTHUMG00000128487 2 2p22.2 family with sequence similarity 82, member A1 protein-coding FAM82A1 family with sequence similarity 82, member A1 O family with sequence similarity 82, member A|microtubule-associated protein|regulator of microtubule dynamics protein 2 20121230 -9606 151449 GDF7 - BMP12 HGNC:4222|MIM:604651|Ensembl:ENSG00000143869|HPRD:06873|Vega:OTTHUMG00000090781 2 2p24.1 growth differentiation factor 7 protein-coding GDF7 growth differentiation factor 7 O GDF-7|growth/differentiation factor 7 20121230 -9606 151457 LOC151457 - - - 2 2p24.1 developmentally regulated GTP binding protein 1 pseudogene pseudo - - - - 20121230 -9606 151473 SLC16A14 - MCT14 HGNC:26417|Ensembl:ENSG00000163053|HPRD:15347|Vega:OTTHUMG00000133205 2 2q36.3 solute carrier family 16, member 14 (monocarboxylic acid transporter 14) protein-coding SLC16A14 solute carrier family 16, member 14 (monocarboxylic acid transporter 14) O MCT 14|monocarboxylate transporter 14|solute carrier family 16 (monocarboxylic acid transporters), member 14|solute carrier family 16 member 14 20121230 -9606 151475 LOC151475 - - - 2 2q37.1 uncharacterized LOC151475 miscRNA - - - - 20121230 -9606 151477 LINC00471 - C2orf52 HGNC:28668|HPRD:14629 2 2q37.1 long intergenic non-protein coding RNA 471 miscRNA LINC00471 long intergenic non-protein coding RNA 471 O - 20121230 -9606 151484 LOC151484 - - - 2 2q37.1 uncharacterized LOC151484 miscRNA - - - - 20121230 -9606 151507 MSL3P1 - MSL3L2 HGNC:17837 2 2q37.1 male-specific lethal 3 homolog (Drosophila) pseudogene 1 pseudo MSL3P1 male-specific lethal 3 homolog (Drosophila) pseudogene 1 O - 20121230 -9606 151516 ASPRV1 - MUNO|SASP|SASPase|Taps HGNC:26321|MIM:611765|Ensembl:ENSG00000244617|HPRD:08683|Vega:OTTHUMG00000129647 2 2p13.3 aspartic peptidase, retroviral-like 1 protein-coding ASPRV1 aspartic peptidase, retroviral-like 1 O TPA-inducible aspartic proteinase-like protein|retroviral-like aspartic protease 1|skin aspartic protease|skin-specific retroviral-like aspartic protease 20121230 -9606 151525 WDSUB1 - UBOX6|WDSAM1 HGNC:26697|Ensembl:ENSG00000196151|HPRD:08773|Vega:OTTHUMG00000132028 2 2q24.2 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1 O 2610014F08Rik|WD repeat and SAM domain containing 1|WD repeat, SAM and U-box domain containing 1|WD repeat, SAM and U-box domain-containing protein 1 20121230 -9606 151531 UPP2 - UDRPASE2|UP2|UPASE2 HGNC:23061|Ensembl:ENSG00000007001|HPRD:15627|Vega:OTTHUMG00000131969 2 2q24.1 uridine phosphorylase 2 protein-coding UPP2 uridine phosphorylase 2 O UPase 2|liver-specific uridine phosphorylase|urdPase 2|uridine phosphorylase-2 20121230 -9606 151534 LBX2-AS1 hCG_1811732 - HGNC:25136|HPRD:14091 2 2p13.1 LBX2 antisense RNA 1 miscRNA LBX2-AS1 LBX2 antisense RNA 1 O - 20121230 -9606 151556 GPR155 - DEP.7|DEPDC3|PGR22 HGNC:22951|Ensembl:ENSG00000163328|HPRD:17066|Vega:OTTHUMG00000132336 2 2q31.1 G protein-coupled receptor 155 protein-coding GPR155 G protein-coupled receptor 155 O G-protein coupled receptor PGR22|integral membrane protein GPR155 20121230 -9606 151579 BZW1P2 - BZW1L1 HGNC:33954 3 3q13.31 basic leucine zipper and W2 domains 1 pseudogene 2 pseudo BZW1P2 basic leucine zipper and W2 domains 1 pseudogene 2 O - 20121230 -9606 151613 TTC14 UNQ5813 DRDL5813|PRO19630 HGNC:24697|Ensembl:ENSG00000163728|HPRD:15579|Vega:OTTHUMG00000157859 3 3q26.33 tetratricopeptide repeat domain 14 protein-coding TTC14 tetratricopeptide repeat domain 14 O TPR repeat protein 14|tetratricopeptide repeat protein 14 20121230 -9606 151636 DTX3L - BBAP HGNC:30323|MIM:613143|Ensembl:ENSG00000163840|HPRD:16843|Vega:OTTHUMG00000159524 3 3q21.1 deltex 3-like (Drosophila) protein-coding DTX3L deltex 3-like (Drosophila) O B-lymphoma- and BAL-associated protein|E3 ubiquitin-protein ligase DTX3L|rhysin 2|rhysin-2|rhysin2 20121230 -9606 151645 PSMC1P1 - PSMC1P|bcm3415 HGNC:30147 3 3p14.1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 1 pseudo PSMC1P1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 1 O - 20121230 -9606 151647 FAM19A4 - TAFA-4|TAFA4 HGNC:21591|Ensembl:ENSG00000163377|HPRD:08343|Vega:OTTHUMG00000158744 3 3p14.1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 protein-coding FAM19A4 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 O chemokine-like protein TAFA-4|protein FAM19A4 20121230 -9606 151648 SGOL1 - NY-BR-85|SGO|Sgo1 HGNC:25088|MIM:609168|Ensembl:ENSG00000129810|HPRD:12377|Vega:OTTHUMG00000130479 3 3p24.3 shugoshin-like 1 (S. pombe) protein-coding SGOL1 shugoshin-like 1 (S. pombe) O hSgo1|serologically defined breast cancer antigen NY-BR-85|shugoshin 1AB protein|shugoshin 1CD protein|shugoshin 1EF protein|shugoshin 1GH protein|shugoshin 1KL protein|shugoshin-like 1 20121230 -9606 151649 PP2D1 - C3orf48 HGNC:28406|Ensembl:ENSG00000183977|HPRD:08066|Vega:OTTHUMG00000155393 3 3p24.3 protein phosphatase 2C-like domain containing 1 protein-coding PP2D1 protein phosphatase 2C-like domain containing 1 O protein phosphatase 2C-like domain-containing protein 1 20121230 -9606 151651 EFHB - - HGNC:26330|Ensembl:ENSG00000163576|HPRD:08054|Vega:OTTHUMG00000150505 3 3p24.3 EF-hand domain family, member B protein-coding EFHB EF-hand domain family, member B O EF-hand domain-containing family member B 20121230 -9606 151657 LOC151657 - - - 3 3q13.12 uncharacterized LOC151657 unknown - - - - 20120508 -9606 151658 LINC00635 - - HGNC:27184 3 3q13.12 long intergenic non-protein coding RNA 635 miscRNA LINC00635 long intergenic non-protein coding RNA 635 O - 20121230 -9606 151742 PPM1L - PP2C-epsilon|PP2CE|PPM1-LIKE HGNC:16381|MIM:611931|Ensembl:ENSG00000163590|HPRD:17889|Vega:OTTHUMG00000159048 3 3q26.1 protein phosphatase, Mg2+/Mn2+ dependent, 1L protein-coding PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L O PP2C epsilon|Protein phosphatase 2C epsilon isoform|protein phosphatase 1L|protein phosphatase 2C isoform epsilon 20121230 -9606 151760 LOC151760 - - - 3 3q13.13 uncharacterized LOC151760 unknown - - - - 20121230 -9606 151790 WDR49 - - HGNC:26587|Ensembl:ENSG00000174776|HPRD:08160|Vega:OTTHUMG00000158290 3 3q26.1 WD repeat domain 49 protein-coding WDR49 WD repeat domain 49 O WD repeat-containing protein 49 20121230 -9606 151825 KRT18P43 - - HGNC:33413 3 3q26.2 keratin 18 pseudogene 43 pseudo KRT18P43 keratin 18 pseudogene 43 O - 20121230 -9606 151827 LRRC34 - - HGNC:28408|Ensembl:ENSG00000171757|HPRD:14519|Vega:OTTHUMG00000164419 3 3q26.2 leucine rich repeat containing 34 protein-coding LRRC34 leucine rich repeat containing 34 O leucine-rich repeat-containing protein 34 20121230 -9606 151835 CPNE9 - - HGNC:24336|Ensembl:ENSG00000144550|HPRD:17307|Vega:OTTHUMG00000128418 3 3p25.3 copine family member IX protein-coding CPNE9 copine family member IX O copine IX|copine-9|copine-like protein 20121230 -9606 151842 PP1P - - HGNC:28884 3 3p24.3 pyrophosphatase (inorganic) 1 pseudogene pseudo PP1P pyrophosphatase (inorganic) 1 pseudogene O - 20121230 -9606 151871 DPPA2 - CT100|ECAT15-2|PESCRG1 HGNC:19197|MIM:614445|Ensembl:ENSG00000163530|HPRD:13248|Vega:OTTHUMG00000159227 3 3q13.13 developmental pluripotency associated 2 protein-coding DPPA2 developmental pluripotency associated 2 O cancer/testis antigen 100|developmental pluripotency-associated protein 2|embryonic stem cell (ESC) associated transcript 15-2|pluripotent embryonic stem cell-related gene 1 protein 20121230 -9606 151877 MAGI1-IT1 - - HGNC:42436 3 3p14.3 MAGI1 intronic transcript 1 (non-protein coding) unknown MAGI1-IT1 MAGI1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 151887 CCDC80 HBE245 DRO1|SSG1|URB|okuribin HGNC:30649|MIM:608298|Ensembl:ENSG00000091986|HPRD:10508|Vega:OTTHUMG00000159265 3 3q13.2 coiled-coil domain containing 80 protein-coding CCDC80 coiled-coil domain containing 80 O coiled-coil domain-containing protein 80|down-regulated by oncogenes protein 1|nuclear envelope protein okuribin|steroid sensitive gene 1|up-regulated in BRS-3 deficient mouse homolog 20121230 -9606 151888 BTLA - BTLA1|CD272 HGNC:21087|MIM:607925|Ensembl:ENSG00000186265|HPRD:06392|Vega:OTTHUMG00000159255 3 3q13.2 B and T lymphocyte associated protein-coding BTLA B and T lymphocyte associated O B and T lymphocyte attenuator|B- and T-lymphocyte attenuator|B- and T-lymphocyte-associated protein 20121230 -9606 151903 CCDC12 - - HGNC:28332|Ensembl:ENSG00000160799|HPRD:13007|Vega:OTTHUMG00000133513 3 3p21.31 coiled-coil domain containing 12 protein-coding CCDC12 coiled-coil domain containing 12 O coiled-coil domain-containing protein 12 20121230 -9606 151963 MB21D2 - C3orf59 HGNC:30438|Ensembl:ENSG00000180611|HPRD:14092|Vega:OTTHUMG00000155768 3 3q29 Mab-21 domain containing 2 protein-coding MB21D2 Mab-21 domain containing 2 O mab-21 domain-containing protein 2|protein MB21D2 20121230 -9606 151987 PPP4R2 SBBI57 PP4R2 HGNC:18296|MIM:613822|Ensembl:ENSG00000163605|HPRD:11453|Vega:OTTHUMG00000158816 3 3p13 protein phosphatase 4, regulatory subunit 2 protein-coding PPP4R2 protein phosphatase 4, regulatory subunit 2 O serine/threonine-protein phosphatase 4 regulatory subunit 2 20121230 -9606 152002 XXYLT1 PSEC0251 C3orf21 HGNC:26639|MIM:614552|Ensembl:ENSG00000173950|HPRD:08757|Vega:OTTHUMG00000155915 3 3q29 xyloside xylosyltransferase 1 protein-coding XXYLT1 xyloside xylosyltransferase 1 O UDP-xylose:alpha-xyloside alpha-1,3-xylosyltransferase 20121230 -9606 152006 RNF38 RP11-84P7.4 - HGNC:18052|MIM:612488|Ensembl:ENSG00000137075|HPRD:11519|Vega:OTTHUMG00000019905 9 9p13 ring finger protein 38 protein-coding RNF38 ring finger protein 38 O RING finger protein 38 20121230 -9606 152007 GLIPR2 RP11-421H8.5 C9orf19|GAPR-1 HGNC:18007|MIM:607141|Ensembl:ENSG00000122694|HPRD:06187|Vega:OTTHUMG00000019900 9 9p13.3 GLI pathogenesis-related 2 protein-coding GLIPR2 GLI pathogenesis-related 2 O 17kD fetal brain protein|Golgi-associated plant pathogenesis-related protein 1|gliPR 2|glioma pathogenesis-related protein 2|golgi-associated PR-1 protein 20121230 -9606 152015 ROPN1B - - HGNC:31927|Ensembl:ENSG00000114547|HPRD:17985|Vega:OTTHUMG00000162651 3 3q21.2 rhophilin associated tail protein 1B protein-coding ROPN1B rhophilin associated tail protein 1B O AKAP-binding sperm protein ropporin|rhophilin-associated protein 1B|ropporin, rhophilin associated protein 1B|ropporin-1B 20121230 -9606 152024 LINC00691 - - HGNC:44514 3 3p24.2 long intergenic non-protein coding RNA 691 miscRNA LINC00691 long intergenic non-protein coding RNA 691 O - 20121230 -9606 152048 FLJ31715 - - - 3 3p22.1 uncharacterized FLJ31715 unknown - - - - 20120710 -9606 152065 C3orf22 - - HGNC:28534|Ensembl:ENSG00000180697|HPRD:14585|Vega:OTTHUMG00000162731 3 3q21.3 chromosome 3 open reading frame 22 protein-coding C3orf22 chromosome 3 open reading frame 22 O uncharacterized protein C3orf22 20121230 -9606 152078 C3orf55 - - HGNC:25146|Ensembl:ENSG00000174899|Vega:OTTHUMG00000158748 3 3q25.32 chromosome 3 open reading frame 55 protein-coding C3orf55 chromosome 3 open reading frame 55 O putative uncharacterized protein C3orf55 20121230 -9606 152098 ZCWPW2 - ZCW2 HGNC:23574|Ensembl:ENSG00000206559|Vega:OTTHUMG00000155705 3 3p24.1 zinc finger, CW type with PWWP domain 2 protein-coding ZCWPW2 zinc finger, CW type with PWWP domain 2 O zinc finger CW-type PWWP domain protein 2 20121230 -9606 152100 CMC1 - C3orf68 HGNC:28783|Ensembl:ENSG00000187118|HPRD:14698|Vega:OTTHUMG00000155660 3 3p24.1 COX assembly mitochondrial protein 1 homolog (S. cerevisiae) protein-coding CMC1 COX assembly mitochondrial protein 1 homolog (S. cerevisiae) O COX assembly mitochondrial protein homolog|CX9C mitochondrial protein required for full expression of COX 1|cmc1p|mitochondrial metallochaperone-like protein 20121230 -9606 152101 VENTXP4 - VENTX2P4 HGNC:30903 3 3p24.2 VENT homeobox pseudogene 4 pseudo VENTXP4 VENT homeobox pseudogene 4 O - 20121230 -9606 152110 NEK10 - - HGNC:18592|Ensembl:ENSG00000163491|HPRD:08135|Vega:OTTHUMG00000130571 3 3p24.1 NIMA-related kinase 10 protein-coding NEK10 NIMA-related kinase 10 O NIMA (never in mitosis gene a)- related kinase 10|never in mitosis A-related kinase 10|nimA-related protein kinase 10|serine/threonine-protein kinase Nek10 20121230 -9606 152118 C3orf79 - - HGNC:37259|Ensembl:ENSG00000237787|Vega:OTTHUMG00000159629 3 3q25.2 chromosome 3 open reading frame 79 protein-coding C3orf79 chromosome 3 open reading frame 79 O putative uncharacterized protein C3orf79 20121230 -9606 152137 CCDC50 - C3orf6|DFNA44|YMER HGNC:18111|MIM:611051|Ensembl:ENSG00000152492|HPRD:06463|Vega:OTTHUMG00000156177 3 3q28 coiled-coil domain containing 50 protein-coding CCDC50 coiled-coil domain containing 50 O coiled-coil domain-containing protein 50|protein Ymer 20121230 -9606 152138 PYDC2 - POP2|cPOP2 HGNC:33512|Ensembl:ENSG00000253548|Vega:OTTHUMG00000156167 3 3q28 pyrin domain containing 2 protein-coding PYDC2 pyrin domain containing 2 O pyrin domain-containing protein 2|pyrin-only protein 2 20121230 -9606 152185 SPICE1 - CCDC52|SPICE HGNC:25083|MIM:613447|Ensembl:ENSG00000163611|HPRD:11242|Vega:OTTHUMG00000159261 3 3q13.2 spindle and centriole associated protein 1 protein-coding SPICE1 spindle and centriole associated protein 1 O coiled-coil domain containing 52|coiled-coil domain-containing protein 52|spindle and centriole protein|spindle and centriole-associated protein 1 20121230 -9606 152189 CMTM8 - CKLFSF8|CKLFSF8-V2 HGNC:19179|MIM:607891|Ensembl:ENSG00000170293|HPRD:06989|Vega:OTTHUMG00000130753 3 3p22.3 CKLF-like MARVEL transmembrane domain containing 8 protein-coding CMTM8 CKLF-like MARVEL transmembrane domain containing 8 O CKLF-like MARVEL transmembrane domain-containing protein 8|chemokine-like factor super family 8|chemokine-like factor superfamily 8|chemokine-like factor superfamily member 8 20121230 -9606 152195 NUDT16P1 - NUDT16P HGNC:27189|HPRD:14093 3 3q22.1 nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 pseudo NUDT16P1 nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 O - 20121230 -9606 152206 CCDC13 - - HGNC:26358|Ensembl:ENSG00000244607|HPRD:08692|Vega:OTTHUMG00000133046 3 3p22.1 coiled-coil domain containing 13 protein-coding CCDC13 coiled-coil domain containing 13 O coiled-coil domain-containing protein 13 20121230 -9606 152217 LOC152217 - - HPRD:14094 3 3q29 uncharacterized LOC152217 miscRNA - - - - 20121230 -9606 152225 LOC152225 - - - 3 3q12.3 uncharacterized LOC152225 miscRNA - - - - 20121230 -9606 152273 FGD5 - ZFYVE23 HGNC:19117|MIM:614788|Ensembl:ENSG00000154783|HPRD:13322|Vega:OTTHUMG00000155556 3 3p25.1 FYVE, RhoGEF and PH domain containing 5 protein-coding FGD5 FYVE, RhoGEF and PH domain containing 5 O FYVE, RhoGEF and PH domain-containing protein 5|zinc finger FYVE domain-containing protein 23 20121230 -9606 152274 LOC152274 - - - 3 3p25.1 uncharacterized LOC152274 unknown - - - - 20120508 -9606 152286 LOC152286 - - - 3 3p25.2 uncharacterized LOC152286 protein-coding - - - - 20111113 -9606 152302 CIDECP - CICE HGNC:24230 3 3p25.3 cell death-inducing DFFA-like effector c pseudogene pseudo CIDECP cell death-inducing DFFA-like effector c pseudogene O - 20121230 -9606 152330 CNTN4 - AXCAM|BIG-2 HGNC:2174|MIM:607280|Ensembl:ENSG00000144619|HPRD:16239|Vega:OTTHUMG00000119031 3 3p26.3 contactin 4 protein-coding CNTN4 contactin 4 O axonal-associated cell adhesion molecule|brain-derived immunoglobulin superfamily protein 2|contactin-4|neural cell adhesion protein BIG-2 20121230 -9606 152404 IGSF11 - BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 HGNC:16669|MIM:608351|Ensembl:ENSG00000144847|HPRD:16321|Vega:OTTHUMG00000159387 3 3q13.32 immunoglobulin superfamily, member 11 protein-coding IGSF11 immunoglobulin superfamily, member 11 O CXADR like 1|V-set and immunoglobulin domain containing 3|V-set and immunoglobulin domain-containing protein 3|brain and testis-specific immunoglobin superfamily protein|brain and testis-specific immunoglobulin superfamily protein|cancer/testis antigen 119|immunoglobulin superfamily member 11 20121230 -9606 152405 C3orf30 - - HGNC:26553|Ensembl:ENSG00000163424|HPRD:08146|Vega:OTTHUMG00000159349 3 3q13.32 chromosome 3 open reading frame 30 protein-coding C3orf30 chromosome 3 open reading frame 30 O uncharacterized protein C3orf30 20121230 -9606 152485 ZNF827 - - HGNC:27193|Ensembl:ENSG00000151612|HPRD:14095|Vega:OTTHUMG00000161362 4 4q31.22 zinc finger protein 827 protein-coding ZNF827 zinc finger protein 827 O - 20121230 -9606 152503 SH3D19 - EBP|EVE1|Kryn|SH3P19 HGNC:30418|MIM:608674|Ensembl:ENSG00000109686|HPRD:16364|Vega:OTTHUMG00000154051 4 4q31.3 SH3 domain containing 19 protein-coding SH3D19 SH3 domain containing 19 O ADAM-binding protein Eve-1|EEN-binding protein|SH3 domain protein D19|SH3 domain-containing protein 19 20121230 -9606 152518 NFXL1 - HOZFP|URCC5 HGNC:18726|Ensembl:ENSG00000170448|HPRD:11025|Vega:OTTHUMG00000128621 4 4p12 nuclear transcription factor, X-box binding-like 1 protein-coding NFXL1 nuclear transcription factor, X-box binding-like 1 O NF-X1-type zinc finger protein NFXL1|ovarian zinc finger protein|up-regulated in colon cancer 5 20121230 -9606 152519 NIPAL1 - NPAL1 HGNC:27194|Ensembl:ENSG00000163293|HPRD:14096|Vega:OTTHUMG00000128622 4 4p12 NIPA-like domain containing 1 protein-coding NIPAL1 NIPA-like domain containing 1 O NIPA-like protein 1|magnesium transporter NIPA3|non-imprinted in Prader-Willi/Angelman syndrome region protein 3 20121230 -9606 152559 PAQR3 - RKTG HGNC:30130|MIM:614577|Ensembl:ENSG00000163291|HPRD:17819|Vega:OTTHUMG00000161026 4 4q21.21 progestin and adipoQ receptor family member III protein-coding PAQR3 progestin and adipoQ receptor family member III O Raf kinase trapping to Golgi|progestin and adipoQ receptor family member 3 20121230 -9606 152573 SHISA3 - hShisa3 HGNC:25159|Ensembl:ENSG00000178343|Vega:OTTHUMG00000161043 4 4p13 shisa homolog 3 (Xenopus laevis) protein-coding SHISA3 shisa homolog 3 (Xenopus laevis) O protein shisa-3 homolog 20121230 -9606 152578 LOC152578 - - - 4 4q12 uncharacterized LOC152578 miscRNA - - - - 20121230 -9606 152579 SCFD2 - STXBP1L1 HGNC:30676|Ensembl:ENSG00000184178|HPRD:15300|Vega:OTTHUMG00000160588 4 4q12 sec1 family domain containing 2 protein-coding SCFD2 sec1 family domain containing 2 O sec1 family domain-containing protein 2|syntaxin binding protein 1-like 1|syntaxin-binding protein 1-like 1 20121230 -9606 152586 LOC152586 - - MIM:610310|Ensembl:ENSG00000205301|HPRD:18736|Vega:OTTHUMG00000161376 4 4q31.1 glycosyltransferase 54 domain-containing protein protein-coding - - - - 20121230 -9606 152594 LOC152594 - - - 4 4q28.3 NIN1/RPN12 binding protein 1 pseudogene pseudo - - - - 20121230 -9606 152641 WWC2-AS2 - C4orf38 HGNC:26390|HPRD:08082 4 4q35.1 WWC2 antisense RNA 2 miscRNA WWC2-AS2 WWC2 antisense RNA 2 O - 20121230 -9606 152663 RPL7AP27 - RPL7A_11_540 HGNC:36806 4 4q35.2 ribosomal protein L7a pseudogene 27 pseudo RPL7AP27 ribosomal protein L7a pseudogene 27 O - 20121230 -9606 152667 FAM192BP - FAM192B|rcNIP30 HGNC:37194 4 4q31.3 family with sequence similarity 192, member B pseudogene pseudo FAM192BP family with sequence similarity 192, member B, pseudogene O - 20121230 -9606 152687 ZNF595 - - HGNC:27196|HPRD:15868 4 4p16.3 zinc finger protein 595 protein-coding ZNF595 zinc finger protein 595 O - 20121230 -9606 152709 ARL4P2 - - HGNC:32379 4 4p14 ADP-ribosylation factor-like 4 pseudogene 2 pseudo ARL4P2 ADP-ribosylation factor-like 4 pseudogene 2 O - 20121230 -9606 152742 LOC152742 - - - 4 4p15.33 uncharacterized LOC152742 miscRNA - - - - 20121230 -9606 152756 FAM218A - C4orf39 HGNC:26466|Ensembl:ENSG00000250486|HPRD:08714|Vega:OTTHUMG00000161252 4 4q32.3 family with sequence similarity 218, member A protein-coding FAM218A family with sequence similarity 218, member A O protein FAM218A|uncharacterized protein C4orf39 20121230 -9606 152789 JAKMIP1 - Gababrbp|JAMIP1|MARLIN1 HGNC:26460|MIM:611195|Ensembl:ENSG00000152969|HPRD:11292|Vega:OTTHUMG00000125491 4 4p16.1 janus kinase and microtubule interacting protein 1 protein-coding JAKMIP1 janus kinase and microtubule interacting protein 1 O GABA-B receptor-binding protein|Jak and microtubule interacting protein 1|janus kinase and microtubule-interacting protein 1|marlin-1|multiple alpha-helices and RNA-linker protein 1|multiple coiled-coil GABABR1-binding protein 20121230 -9606 152815 THAP6 - - HGNC:23189|MIM:612535|Ensembl:ENSG00000174796|HPRD:15499|Vega:OTTHUMG00000130108 4 4q21.1 THAP domain containing 6 protein-coding THAP6 THAP domain containing 6 O THAP domain-containing protein 6 20121230 -9606 152816 C4orf26 - - HGNC:26300|MIM:614829|Ensembl:ENSG00000174792|HPRD:08040|Vega:OTTHUMG00000130104 4 4q21.1 chromosome 4 open reading frame 26 protein-coding C4orf26 chromosome 4 open reading frame 26 O uncharacterized protein C4orf26 20121230 -9606 152831 KLB - BKL HGNC:15527|MIM:611135|Ensembl:ENSG00000134962|HPRD:14097|Vega:OTTHUMG00000128577 4 4p14 klotho beta protein-coding KLB klotho beta O beta-klotho|betaKlotho|klotho beta like|klotho beta-like protein 20121230 -9606 152845 LOC152845 - - - 4 4q21.23 pleiomorphic adenoma gene-like 2 pseudogene pseudo - - - - 20121230 -9606 152877 FAM53A - DNTNP HGNC:31860|Ensembl:ENSG00000174137|HPRD:12900|Vega:OTTHUMG00000159855 4 4p16.3 family with sequence similarity 53, member A protein-coding FAM53A family with sequence similarity 53, member A O dorsal neural-tube nuclear protein|protein FAM53A 20121230 -9606 152905 RTN3P1 - NSPLII|RTN3PS HGNC:19212 4 4q31.21 reticulon 3 pseudogene 1 pseudo RTN3P1 reticulon 3 pseudogene 1 O - 20121230 -9606 152926 PPM1K - BDP|PP2Ckappa|PP2Cm|PTMP|UG0882E07 HGNC:25415|MIM:611065|Ensembl:ENSG00000163644|HPRD:15167|Vega:OTTHUMG00000130952 4 4q22.1 protein phosphatase, Mg2+/Mn2+ dependent, 1K protein-coding PPM1K protein phosphatase, Mg2+/Mn2+ dependent, 1K O PP2C domain-containing protein phosphatase 1K|PP2C-kappa|PP2C-type mitochondrial phosphoprotein phosphatase|branched-chain alpha-ketoacid dehydrogenase phosphatase|protein phosphatase 1K, mitochondrial|protein phosphatase 2C kappa 20121230 -9606 152940 C4orf45 - - HGNC:26342|Ensembl:ENSG00000164123|HPRD:08058|Vega:OTTHUMG00000161988 4 4q32.1 chromosome 4 open reading frame 45 protein-coding C4orf45 chromosome 4 open reading frame 45 O uncharacterized protein C4orf45 20121230 -9606 152956 FLJ12425 - - - 4 4q22.3 uncharacterized protein FLJ12425 protein-coding - - - - 20111025 -9606 152992 TRMT44 - C4orf23|METTL19|TRM44 HGNC:26653|MIM:614309|Ensembl:ENSG00000155275|HPRD:08760|Vega:OTTHUMG00000160935 4 4p16.1 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding TRMT44 tRNA methyltransferase 44 homolog (S. cerevisiae) O methyltransferase like 19|methyltransferase-like protein 19|probable tRNA (uracil-O(2)-)-methyltransferase 20121230 -9606 153020 RASGEF1B - GPIG4 HGNC:24881|MIM:614532|Ensembl:ENSG00000138670|HPRD:17955|Vega:OTTHUMG00000160890 4 4q21.21 RasGEF domain family, member 1B protein-coding RASGEF1B RasGEF domain family, member 1B O GPI gamma-4|GPI-gamma 4|ras-GEF domain-containing family member 1B 20121230 -9606 153090 DAB2IP RP11-298A17.1 AF9Q34|AIP1|DIP1/2 HGNC:17294|MIM:609205|Ensembl:ENSG00000136848|HPRD:09903|Vega:OTTHUMG00000020595 9 9q33.1-q33.3 DAB2 interacting protein protein-coding DAB2IP DAB2 interacting protein O ASK-interacting protein 1|ASK1-interacting protein 1|DAB2 interaction protein|DAB2-interacting protein|DOC-2/DAB2 interactive protein|disabled homolog 2-interacting protein|nGAP-like protein 20121230 -9606 153129 SLC38A9 - - HGNC:26907|Ensembl:ENSG00000177058|HPRD:08817|Vega:OTTHUMG00000131189 5 5q11.2 solute carrier family 38, member 9 protein-coding SLC38A9 solute carrier family 38, member 9 O putative sodium-coupled neutral amino acid transporter 9 20121230 -9606 153163 MGC32805 - - - 5 5q23.2 uncharacterized LOC153163 miscRNA - - - - 20121230 -9606 153201 SLC36A2 - PAT2|TRAMD1 HGNC:18762|MIM:608331|Ensembl:ENSG00000186335|HPRD:12215|Vega:OTTHUMG00000130129 5 5q33.1 solute carrier family 36 (proton/amino acid symporter), member 2 protein-coding SLC36A2 solute carrier family 36 (proton/amino acid symporter), member 2 O proton-coupled amino acid transporter 2|tramdorin-1 20121230 -9606 153218 SPINK13 - HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 HGNC:27200|Ensembl:ENSG00000214510|Vega:OTTHUMG00000163426 5 5q32 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding SPINK13 serine peptidase inhibitor, Kazal type 13 (putative) O hepatitis B virus DNA polymerase transactivated human serine protease inhibitor|hepatitis B virus DNA polymerase transactivated serine protease inhibitor|serine protease inhibitor Kazal-type 13|serine protease inhibitor Kazal-type 5-like 3 20121230 -9606 153222 CREBRF - C5orf41|LRF HGNC:24050|Ensembl:ENSG00000164463|HPRD:17308|Vega:OTTHUMG00000163322 5 5q35.1 CREB3 regulatory factor protein-coding CREBRF CREB3 regulatory factor O UPF0474 protein C5orf41|adult retina protein|luman recruitment factor|luman-recruiting factor|luman/CREB3 recruitment factor 20121230 -9606 153241 CEP120 - CCDC100 HGNC:26690|MIM:613446|Ensembl:ENSG00000168944|HPRD:08769|Vega:OTTHUMG00000128922 5 5q23.2 centrosomal protein 120kDa protein-coding CEP120 centrosomal protein 120kDa O centrosomal protein of 120 kDa|coiled-coil domain containing 100|coiled-coil domain-containing protein 100 20121230 -9606 153328 SLC25A48 - HDMCP HGNC:30451|Ensembl:ENSG00000145832|HPRD:14098|Vega:OTTHUMG00000157007 5 5q31.1 solute carrier family 25, member 48 protein-coding SLC25A48 solute carrier family 25, member 48 O HCC-down-regulated mitochondrial carrier protein|solute carrier family 25 member 48 20121230 -9606 153339 TMEM167A - TMEM167 HGNC:28330|Ensembl:ENSG00000174695|HPRD:14490|Vega:OTTHUMG00000162570 5 5q14.2 transmembrane protein 167A protein-coding TMEM167A transmembrane protein 167A O protein kish-A|transmembrane protein 167 20121230 -9606 153364 MBLAC2 - - HGNC:33711|Ensembl:ENSG00000176055|Ensembl:ENSG00000259131|HPRD:14099|Vega:OTTHUMG00000131327 5 5q14.3 metallo-beta-lactamase domain containing 2 protein-coding MBLAC2 metallo-beta-lactamase domain containing 2 O metallo-beta-lactamase domain-containing protein 2 20121230 -9606 153396 TMEM161B UNQ679/PRO1313 FLB3342|PRO1313 HGNC:28483|Ensembl:ENSG00000164180|HPRD:14555|Vega:OTTHUMG00000131323 5 5q14.3 transmembrane protein 161B protein-coding TMEM161B transmembrane protein 161B O - 20121230 -9606 153443 SRFBP1 - BUD22|P49|Rlb1|STRAP|p49/STRAP HGNC:26333|MIM:610479|Ensembl:ENSG00000151304|HPRD:08685|Vega:OTTHUMG00000162970 5 5q23.1 serum response factor binding protein 1 protein-coding SRFBP1 serum response factor binding protein 1 O BUD22 homolog|SRF-dependent transcription regulation associated protein|SRF-dependent transcription regulation-associated protein|serum response factor-binding protein 1 20121230 -9606 153469 JAKMIP2-AS1 - - HGNC:27203 5 5q32 JAKMIP2 antisense RNA 1 miscRNA JAKMIP2-AS1 JAKMIP2 antisense RNA 1 O - 20121230 -9606 153478 PLEKHG4B - - HGNC:29399|HPRD:13900 5 5p15.33 pleckstrin homology domain containing, family G (with RhoGef domain) member 4B protein-coding PLEKHG4B pleckstrin homology domain containing, family G (with RhoGef domain) member 4B O PH domain-containing family G member 4B|pleckstrin homology domain-containing family G member 4B 20121230 -9606 153527 ZMAT2 - Ptg-12|Snu23|hSNU23 HGNC:26433|Ensembl:ENSG00000146007|HPRD:08094|Vega:OTTHUMG00000129503 5 5q31.3 zinc finger, matrin-type 2 protein-coding ZMAT2 zinc finger, matrin-type 2 O zinc finger matrin-type protein 2|zinc finger, matrin type 2 20121230 -9606 153546 LOC153546 - - - 5 5p13.3 uncharacterized LOC153546 unknown - - - - 20120508 -9606 153562 MARVELD2 - DFNB49|MARVD2|MRVLDC2|Tric HGNC:26401|MIM:610572|Ensembl:ENSG00000152939|HPRD:11293|Vega:OTTHUMG00000162512 5 5q13.2 MARVEL domain containing 2 protein-coding MARVELD2 MARVEL domain containing 2 O MARVEL (membrane-associating) domain containing 2|MARVEL domain-containing protein 2|tricellulin 20121230 -9606 153571 C5orf38 - CEI|IRX2NB HGNC:24226|MIM:610522|Ensembl:ENSG00000186493|HPRD:16706|Vega:OTTHUMG00000161741 5 5p15.33 chromosome 5 open reading frame 38 protein-coding C5orf38 chromosome 5 open reading frame 38 O IRX2 neighbor|coordinated expression to IRX2|coordinated expression to IRXA2 homeobox|coordinated expression to IRXA2 protein|protein CEI 20121230 -9606 153572 IRX2 - IRXA2 HGNC:14359|MIM:606198|Ensembl:ENSG00000170561|HPRD:09368|Vega:OTTHUMG00000090377 5 5p15.33 iroquois homeobox 2 protein-coding IRX2 iroquois homeobox 2 O homeodomain protein IRXA2|iroquois homeobox protein 2|iroquois-class homeodomain protein IRX-2 20121230 -9606 153577 LOC153577 - - - 5 5q35.3 uncharacterized LOC153577 unknown - - - - 20120508 -9606 153579 BTNL9 UNQ1900/PRO4346 BTN3|VDLS1900 HGNC:24176|Ensembl:ENSG00000165810|HPRD:12550|Vega:OTTHUMG00000133152 5 5q35.3 butyrophilin-like 9 protein-coding BTNL9 butyrophilin-like 9 O butyrophilin 3|butyrophilin-like protein 9 20121230 -9606 153642 ARSK UNQ630/PRO1246 TSULF HGNC:25239|MIM:610011|Ensembl:ENSG00000164291|HPRD:13183|Vega:OTTHUMG00000121166 5 5q15 arylsulfatase family, member K protein-coding ARSK arylsulfatase family, member K O ASK|arylsulfatase K|telethon sulfatase 20121230 -9606 153643 FAM81B - - HGNC:26335|Ensembl:ENSG00000153347|HPRD:08686|Vega:OTTHUMG00000162837 5 5q15 family with sequence similarity 81, member B protein-coding FAM81B family with sequence similarity 81, member B O protein FAM81B 20121230 -9606 153657 TTC23L - MC25-1 HGNC:26355|Ensembl:ENSG00000205838|HPRD:08691|Vega:OTTHUMG00000162020 5 5p13.2 tetratricopeptide repeat domain 23-like protein-coding TTC23L tetratricopeptide repeat domain 23-like O tetratricopeptide repeat protein 23-like 20121230 -9606 153682 LOC153682 - - - 5 5p13.1 uncharacterized LOC153682 protein-coding - - - - 20111113 -9606 153684 LOC153684 - - HPRD:14101 5 5p12 uncharacterized LOC153684 miscRNA - - - - 20121230 -9606 153733 CCDC112 - MBC1 HGNC:28599|Ensembl:ENSG00000164221|HPRD:11346|Vega:OTTHUMG00000128894 5 5q22.3 coiled-coil domain containing 112 protein-coding CCDC112 coiled-coil domain containing 112 O coiled-coil domain-containing protein 112|mutated in bladder cancer 1|mutated in bladder cancer protein 1 20121230 -9606 153743 PPP1R2P3 - - HGNC:16318 5 5q33.3 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3 pseudo PPP1R2P3 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3 O - 20121230 -9606 153745 FAM71B HSD51 - HGNC:28397|Ensembl:ENSG00000170613|HPRD:14516|Vega:OTTHUMG00000130246 5 5q33.3 family with sequence similarity 71, member B protein-coding FAM71B family with sequence similarity 71, member B O protein FAM71B 20121230 -9606 153768 PRELID2 - - HGNC:28306|Ensembl:ENSG00000186314|HPRD:14479|Vega:OTTHUMG00000163384 5 5q32 PRELI domain containing 2 protein-coding PRELID2 PRELI domain containing 2 O PRELI domain-containing protein 2 20121230 -9606 153769 SH3RF2 - HEPP1|POSHER|PPP1R39|RNF158 HGNC:26299|MIM:613377|Ensembl:ENSG00000156463|HPRD:10229|Vega:OTTHUMG00000129685 5 5q32 SH3 domain containing ring finger 2 protein-coding SH3RF2 SH3 domain containing ring finger 2 O POSH-eliminating RING protein|RING finger protein 158|SH3 domain-containing RING finger protein 2|heart protein phosphatase 1-binding protein|protein phosphatase 1 regulatory subunit 39|protein phosphatase 1, regulatory subunit 39|putative E3 ubiquitin-protein ligase SH3RF2 20121230 -9606 153770 PLAC8L1 - - HGNC:31746|Ensembl:ENSG00000173261|HPRD:18737|Vega:OTTHUMG00000163418 5 5q32 PLAC8-like 1 protein-coding PLAC8L1 PLAC8-like 1 O PLAC8-like protein 1 20121230 -9606 153811 LOC153811 - - - 5 5q35.3 uncharacterized LOC153811 unknown - - - - 20120508 -9606 153830 RNF145 - - HGNC:20853|Ensembl:ENSG00000145860|HPRD:08113|Vega:OTTHUMG00000130306 5 5q33.3 ring finger protein 145 protein-coding RNF145 ring finger protein 145 O RING finger protein 145 20121230 -9606 153842 SHFM1P1 - DSS1P1|SHFM1P HGNC:24454 5 5q14.1 split hand/foot malformation (ectrodactyly) type 1 pseudogene 1 pseudo SHFM1P1 split hand/foot malformation (ectrodactyly) type 1 pseudogene 1 O - 20121230 -9606 153893 LOC153893 - - - 6 6q16.3 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 153910 LOC153910 - - - 6 6q24.2 uncharacterized LOC153910 miscRNA - - - - 20121230 -9606 153918 ZC2HC1B RP3-468K18.4 C6orf94|FAM164B|dJ468K18.5 HGNC:21174|Ensembl:ENSG00000118491|HPRD:10178 6 6q24.2 zinc finger, C2HC-type containing 1B protein-coding ZC2HC1B zinc finger, C2HC-type containing 1B O family with sequence similarity 164, member B|protein FAM164B|zinc finger C2HC domain-containing protein 1B 20121230 -9606 153932 SRP72P2 - dJ274L14.2 HGNC:31096 6 6q25.3 signal recognition particle 72kDa pseudogene 2 pseudo SRP72P2 signal recognition particle 72kDa pseudogene 2 O - 20121230 -9606 154007 SNRNP48 RP3-336K20__B.1 C6orf151|dJ336K20B.1|dJ512B11.2 HGNC:21368|Ensembl:ENSG00000168566|HPRD:12858|Vega:OTTHUMG00000014213 6 6p24.3 small nuclear ribonucleoprotein 48kDa (U11/U12) protein-coding SNRNP48 small nuclear ribonucleoprotein 48kDa (U11/U12) O U11/U12 small nuclear ribonucleoprotein 48 kDa protein|U11/U12 snRNP 48 kDa protein|U11/U12 snRNP 48K|U11/U12-48K 20121230 -9606 154043 CNKSR3 RP11-486M3.1 MAGI1 HGNC:23034|Ensembl:ENSG00000153721|HPRD:14349|Vega:OTTHUMG00000015873 6 6q25.2 CNKSR family member 3 protein-coding CNKSR3 CNKSR family member 3 O CNK homolog protein 3|CNK3|connector enhancer of KSR 3|connector enhancer of kinase suppressor of ras 3|maguin-like protein|membrane associated guanylate kinase interacting protein-like 1|membrane associated guanylate kinase, WW and PDZ domain containing 1|membrane-associated guanylate kinase-interacting protein-like 1 20121230 -9606 154064 RAET1L - ULBP6 HGNC:16798|MIM:611047|Ensembl:ENSG00000155918|HPRD:17949|Vega:OTTHUMG00000015809 6 6q25.1 retinoic acid early transcript 1L protein-coding RAET1L retinoic acid early transcript 1L O UL16 binding protein 6|retinoic acid early transcript 1L protein 20121230 -9606 154075 SAMD3 RP11-73O6.2 - HGNC:21574|Ensembl:ENSG00000164483|HPRD:11530|Vega:OTTHUMG00000015556 6 6q23.1 sterile alpha motif domain containing 3 protein-coding SAMD3 sterile alpha motif domain containing 3 O SAM domain-containing protein 3|sterile alpha motif domain-containing protein 3 20121230 -9606 154089 MGC34034 RP4-662A9.2 - - 6 6q23.2 uncharacterized protein MGC34034 miscRNA - - - - 20121230 -9606 154091 SLC2A12 - GLUT12|GLUT8 HGNC:18067|MIM:610372|Ensembl:ENSG00000146411|HPRD:11572|Vega:OTTHUMG00000015611 6 6q23.2 solute carrier family 2 (facilitated glucose transporter), member 12 protein-coding SLC2A12 solute carrier family 2 (facilitated glucose transporter), member 12 O GLUT-12|glucose transporter type 12|solute carrier family 2, facilitated glucose transporter member 12 20121230 -9606 154092 LOC154092 - - - 6 6q23.2 uncharacterized LOC154092 miscRNA - - - - 20121230 -9606 154141 MBOAT1 RP1-130G2.2 1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 HGNC:21579|MIM:611732|Ensembl:ENSG00000172197|Vega:OTTHUMG00000014334 6 6p22.3 membrane bound O-acyltransferase domain containing 1 protein-coding MBOAT1 membrane bound O-acyltransferase domain containing 1 O 1-acylglycerophosphoserine O-acyltransferase|O-acyltransferase (membrane bound) domain containing 1|O-acyltransferase domain-containing protein 1|lyso-PS acyltransferase|lysophosphatidylethanolamine acyltransferase 1|lysophosphatidylserine acyltransferase|lysophospholipid acyltransferase 1|membrane-bound O-acyltransferase domain-containing protein 1 20121230 -9606 154150 HDGFL1 - PWWP1|dJ309H15.1 HGNC:21095|Ensembl:ENSG00000112273|HPRD:17935|Vega:OTTHUMG00000016206 6 6p22.3 hepatoma derived growth factor-like 1 protein-coding HDGFL1 hepatoma derived growth factor-like 1 O HDGF (hepatoma-derived growth factor) like|PWWP domain containing 1|PWWP domain-containing protein 1|hepatoma-derived growth factor-like protein 1 20121230 -9606 154197 PNLDC1 RP1-195P10.1 - HGNC:21185|Ensembl:ENSG00000146453|HPRD:17868|Vega:OTTHUMG00000015941 6 6q25.3 poly(A)-specific ribonuclease (PARN)-like domain containing 1 protein-coding PNLDC1 poly(A)-specific ribonuclease (PARN)-like domain containing 1 O poly(A)-specific ribonuclease PARN-like domain-containing protein 1 20121230 -9606 154214 RNF217 RP1-84N20.1 C6orf172|IBRDC1|dJ84N20.1 HGNC:21487|Ensembl:ENSG00000146373|HPRD:17125|Vega:OTTHUMG00000015504 6 6q22.31 ring finger protein 217 protein-coding RNF217 ring finger protein 217 O IBR domain containing 1|IBR domain-containing protein 1|probable E3 ubiquitin-protein ligase RNF217 20121230 -9606 154215 NKAIN2 RP1-305A19.1 FAM77B|NKAIP2|TCBA|TCBA1 HGNC:16443|MIM:609758|Ensembl:ENSG00000188580|HPRD:18168|Vega:OTTHUMG00000015500 6 6q21 Na+/K+ transporting ATPase interacting 2 protein-coding NKAIN2 Na+/K+ transporting ATPase interacting 2 O Na(+)/K(+)-transporting ATPase subunit beta-1-interacting protein 2|T-cell lymphoma breakpoint-associated target protein 1|sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2 20121230 -9606 154288 KHDC3L - C6orf221|ECAT1|HYDM2 HGNC:33699|MIM:611687|Ensembl:ENSG00000203908|HPRD:18560|Vega:OTTHUMG00000015024 6 6q13 KH domain containing 3-like, subcortical maternal complex member protein-coding KHDC3L KH domain containing 3-like, subcortical maternal complex member O ES cell-associated transcript 1 protein|KHDC3-like protein 20121230 -9606 154313 C6orf165 - dJ382I10.1 HGNC:21405|Ensembl:ENSG00000213204|HPRD:12863|Vega:OTTHUMG00000015173 6 6q15 chromosome 6 open reading frame 165 protein-coding C6orf165 chromosome 6 open reading frame 165 O UPF0704 protein C6orf165 20121230 -9606 154386 C6orf195 - RP11-145H9.2|bA145H9.2 HGNC:21600|Ensembl:ENSG00000164385|HPRD:12870|Vega:OTTHUMG00000014122 6 6p25.2 chromosome 6 open reading frame 195 protein-coding C6orf195 chromosome 6 open reading frame 195 O uncharacterized protein C6orf195 20121230 -9606 154442 BVES-AS1 RP11-99L11.2 C6orf112|bA99L11.2 HGNC:21223 6 6q21 BVES antisense RNA 1 miscRNA BVES-AS1 BVES antisense RNA 1 O - 20121230 -9606 154449 LOC154449 - - - 6 6q27 uncharacterized LOC154449 miscRNA - - - - 20121230 -9606 154467 CCDC167 RP1-153P14.2 C6orf129|HSPC265 HGNC:21239|Ensembl:ENSG00000198937|HPRD:18561|Vega:OTTHUMG00000014625 6 6p21.2 coiled-coil domain containing 167 protein-coding CCDC167 coiled-coil domain containing 167 O coiled-coil domain-containing protein 167|transmembrane and coiled-coil domain-containing protein C6orf129 20121230 -9606 154661 RUNDC3B - RPIB9|RPIP9 HGNC:30286|Ensembl:ENSG00000105784|HPRD:15274|Vega:OTTHUMG00000131035 7 7q21.12 RUN domain containing 3B protein-coding RUNDC3B RUN domain containing 3B O RPIP-9|RUN domain-containing protein 3B|Rap2 binding protein 9|Rap2-binding protein 9|Rap2-interacting protein 9 20121230 -9606 154664 ABCA13 - - HGNC:14638|MIM:607807|Ensembl:ENSG00000179869|HPRD:07422|Vega:OTTHUMG00000155840 7 7p12.3 ATP-binding cassette, sub-family A (ABC1), member 13 protein-coding ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 O ATP binding cassette transporter A13|ATP-binding cassette sub-family A member 13 20121230 -9606 154743 C7orf60 - - HGNC:26475|Ensembl:ENSG00000164603|HPRD:08108|Vega:OTTHUMG00000155233 7 7q31.1 chromosome 7 open reading frame 60 protein-coding C7orf60 chromosome 7 open reading frame 60 O UPF0532 protein C7orf60 20121230 -9606 154754 PRSS3P2 - T6|TRY6 HGNC:43788 7 7q34 protease, serine, 3 pseudogene 2 pseudo PRSS3P2 protease, serine, 3 pseudogene 2 O - 20121230 -9606 154761 LOC154761 - - - 7 7q35 family with sequence similarity 115, member C pseudogene pseudo - - - - 20121230 -9606 154790 CLEC2L hCG_16425 - HGNC:21969|Ensembl:ENSG00000236279|Vega:OTTHUMG00000164900 7 7q34 C-type lectin domain family 2, member L protein-coding CLEC2L C-type lectin domain family 2, member L O C-type lectin domain family 2 member L 20121230 -9606 154791 C7orf55 HSPC268 FMC1 HGNC:26946|Ensembl:ENSG00000164898|HPRD:13714|Vega:OTTHUMG00000151719 7 7q34 chromosome 7 open reading frame 55 protein-coding C7orf55 chromosome 7 open reading frame 55 O UPF0562 protein C7orf55|formation of mitochondrial complexes 1 homolog 20121230 -9606 154796 AMOT - - HGNC:17810|MIM:300410|Ensembl:ENSG00000126016|HPRD:02327|Vega:OTTHUMG00000022216 X Xq23 angiomotin protein-coding AMOT angiomotin O angiomotin p130 isoform|angiomotin p80 isoform 20121230 -9606 154807 VKORC1L1 - - HGNC:21492|MIM:608838|Ensembl:ENSG00000196715|HPRD:12312|Vega:OTTHUMG00000129449 7 7q11.21 vitamin K epoxide reductase complex, subunit 1-like 1 protein-coding VKORC1L1 vitamin K epoxide reductase complex, subunit 1-like 1 O VKORC1-like protein 1|vitamin K epoxide reductase complex subunit 1-like protein 1 20121230 -9606 154810 AMOTL1 - JEAP HGNC:17811|MIM:614657|Ensembl:ENSG00000166025|HPRD:12451|Vega:OTTHUMG00000167828 11 11q14.3 angiomotin like 1 protein-coding AMOTL1 angiomotin like 1 O angiomotin-like protein 1|junction-enriched and associated protein 20121230 -9606 154822 LINC00689 tcag7.1307 - HGNC:27217 7 7q36.3 long intergenic non-protein coding RNA 689 miscRNA LINC00689 long intergenic non-protein coding RNA 689 O - 20121230 -9606 154860 FEZF1-AS1 - - HGNC:41001 7 7q31.32 FEZF1 antisense RNA 1 miscRNA FEZF1-AS1 FEZF1 antisense RNA 1 O - 20121230 -9606 154865 IQUB - - HGNC:21995|Ensembl:ENSG00000164675|HPRD:08194|Vega:OTTHUMG00000157347 7 7q31.32 IQ motif and ubiquitin domain containing protein-coding IQUB IQ motif and ubiquitin domain containing O IQ and ubiquitin-like domain-containing protein 20121230 -9606 154872 LOC154872 - - HPRD:18562 7 7q31.33 uncharacterized protein LOC154872 protein-coding - - - - 20121230 -9606 154881 KCTD7 - CLN14|EPM3 HGNC:21957|MIM:611725|Ensembl:ENSG00000243335|HPRD:13770|Vega:OTTHUMG00000129543 7 7q11.21 potassium channel tetramerisation domain containing 7 protein-coding KCTD7 potassium channel tetramerisation domain containing 7 O BTB/POZ domain-containing protein KCTD7 20121230 -9606 154907 C7orf66 - - HGNC:33712|Ensembl:ENSG00000205174|HPRD:18563|Vega:OTTHUMG00000154867 7 7q31.1 chromosome 7 open reading frame 66 protein-coding C7orf66 chromosome 7 open reading frame 66 O Putative uncharacterized protein LOC154907|uncharacterized protein C7orf66 20121230 -9606 154937 LOC154937 - - - 7 7p11.2 protein phosphatase 2, regulatory subunit B', epsilon isoform pseudogene pseudo - - - - 20121230 -9606 155006 TMEM213 - - HGNC:27220|Ensembl:ENSG00000214128|Vega:OTTHUMG00000157182 7 7q34 transmembrane protein 213 protein-coding TMEM213 transmembrane protein 213 O - 20121230 -9606 155019 ST13P7 - FAM10A7|FAM10A7P HGNC:18558 7 7q33 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 7 pseudo ST13P7 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 7 O - 20121230 -9606 155038 GIMAP8 - IAN-9|IAN6|IANT|hIAN6 HGNC:21792|Ensembl:ENSG00000171115|HPRD:13577|Vega:OTTHUMG00000158327 7 7q36.1 GTPase, IMAP family member 8 protein-coding GIMAP8 GTPase, IMAP family member 8 O GTPase IMAP family member 8|human immune associated nucleotide 6|immune associated nucleotide|immune-associated nucleotide-binding protein 9|protein IanT 20121230 -9606 155051 CRYGN - - HGNC:20458|MIM:609603|Ensembl:ENSG00000127377|HPRD:16761|Vega:OTTHUMG00000157353 7 7q36.1 crystallin, gamma N protein-coding CRYGN crystallin, gamma N O gamma-N-crystallin|gamma-crystallin N|gammaN-crystallin 20121230 -9606 155054 ZNF425 - - HGNC:20690|Ensembl:ENSG00000204947|HPRD:11715|Vega:OTTHUMG00000158971 7 7q36.1 zinc finger protein 425 protein-coding ZNF425 zinc finger protein 425 O - 20121230 -9606 155060 LOC155060 - - HPRD:17309 7 7q36.1 AI894139 pseudogene pseudo - - - - 20121230 -9606 155061 ZNF746 - PARIS HGNC:21948|MIM:613914|Ensembl:ENSG00000181220|HPRD:08099|Vega:OTTHUMG00000158972 7 7q36.1 zinc finger protein 746 protein-coding ZNF746 zinc finger protein 746 O parkin-interacting substrate|parkin-interacting sustrate 20121230 -9606 155066 ATP6V0E2 - ATP6V0E2L|C7orf32 HGNC:21723|MIM:611019|Ensembl:ENSG00000171130|HPRD:12920|Vega:OTTHUMG00000158094 7 7q36.1 ATPase, H+ transporting V0 subunit e2 protein-coding ATP6V0E2 ATPase, H+ transporting V0 subunit e2 O H+-ATPase e2 subunit|V-ATPase subunit e 2|V-type proton ATPase subunit e 2|lysosomal 9 kDa H(+)-transporting ATPase V0 subunit e2|vacuolar proton pump subunit e 2|vacuolar proton-ATPase subunit 20121230 -9606 155100 CCT8L1P - CCT8L1 HGNC:32153|HPRD:18738 7 7q36.1 chaperonin containing TCP1, subunit 8 (theta)-like 1, pseudogene pseudo CCT8L1P chaperonin containing TCP1, subunit 8 (theta)-like 1, pseudogene O - 20121230 -9606 155184 SLC2A7 RP5-963K15.3 GLUT7 HGNC:13445|MIM:610371|Ensembl:ENSG00000197241|HPRD:15365|Vega:OTTHUMG00000057499 1 1p36.2 solute carrier family 2 (facilitated glucose transporter), member 7 protein-coding SLC2A7 solute carrier family 2 (facilitated glucose transporter), member 7 O GLUT-7|glucose transporter type 7|intestinal facilitative glucose transporter 7|solute carrier family 2, facilitated glucose transporter member 7 20121230 -9606 155185 AMZ1 - - HGNC:22231|Ensembl:ENSG00000174945|HPRD:17232|Vega:OTTHUMG00000152111 7 7p22.3 archaelysin family metallopeptidase 1 protein-coding AMZ1 archaelysin family metallopeptidase 1 O archaemetzincin-1|archeobacterial metalloproteinase-like protein 1|metalloproteinase-like protein 20121230 -9606 155340 OR7E136P - OR7E139P|OR7E147P HGNC:19557 7 7p22.1 olfactory receptor, family 7, subfamily E, member 136 pseudogene pseudo OR7E136P olfactory receptor, family 7, subfamily E, member 136 pseudogene O - 20121230 -9606 155368 WBSCR27 - - HGNC:19068|MIM:612546|Ensembl:ENSG00000165171|HPRD:15661|Vega:OTTHUMG00000130033 7 7q11.23 Williams Beuren syndrome chromosome region 27 protein-coding WBSCR27 Williams Beuren syndrome chromosome region 27 O Williams-Beuren syndrome chromosomal region 27 protein 20121230 -9606 155370 SBDSP1 - SBDSP HGNC:21646 7 7q11.23 Shwachman-Bodian-Diamond syndrome pseudogene 1 pseudo SBDSP1 Shwachman-Bodian-Diamond syndrome pseudogene 1 O - 20121230 -9606 155382 VPS37D - WBSCR24 HGNC:18287|MIM:610039|Ensembl:ENSG00000176428|Vega:OTTHUMG00000157227 7 7q11.23 vacuolar protein sorting 37 homolog D (S. cerevisiae) protein-coding VPS37D vacuolar protein sorting 37 homolog D (S. cerevisiae) O ESCRT-I complex subunit VPS37D|Williams Beuren syndrome chromosome region 24|Williams-Beuren syndrome critical region protein 24|vacuolar protein sorting 37D|vacuolar protein sorting-associated protein 37D|williams-Beuren syndrome chromosomal region 24 protein|williams-Beuren syndrome region protein 24 20121230 -9606 155400 NSUN5P1 - NSUN5B|WBSCR20B HGNC:19146|HPRD:15656 7 7q11.23 NOP2/Sun domain family, member 5 pseudogene 1 pseudo NSUN5P1 NOP2/Sun domain family, member 5 pseudogene 1 O - 20121230 -9606 155435 RBM33 hCG_20114 PRR8 HGNC:27223|Ensembl:ENSG00000184863|HPRD:17310|Vega:OTTHUMG00000150260 7 7q36.3 RNA binding motif protein 33 protein-coding RBM33 RNA binding motif protein 33 O RNA-binding motif protein 33|RNA-binding protein 33|hypothetical protein MGC20460|proline rich 8|proline-rich protein 8 20121230 -9606 155465 AGR3 UNQ642/PRO1272 AG3|BCMP11|HAG3|PDIA18|hAG-3 HGNC:24167|MIM:609482|Ensembl:ENSG00000173467|HPRD:16545|Vega:OTTHUMG00000128411 7 7p21.1 anterior gradient 3 homolog (Xenopus laevis) protein-coding AGR3 anterior gradient 3 homolog (Xenopus laevis) O AG-3|anterior gradient homolog 3|anterior gradient protein 3 homolog|breast cancer membrane protein 11|protein disulfide isomerase family A, member 18 20121230 -9606 157206 RPL21P11 - RPL21_50_1399 HGNC:19800 14 14q32.11 ribosomal protein L21 pseudogene 11 pseudo RPL21P11 ribosomal protein L21 pseudogene 11 O - 20121230 -9606 157247 MGC27345 - - - 7 7q32.1 uncharacterized protein MGC27345 miscRNA - - - - 20121230 -9606 157273 LOC157273 - - - 8 8p23.1 uncharacterized LOC157273 miscRNA - - - - 20121230 -9606 157285 SGK223 - PRAGMIN Ensembl:ENSG00000182319|Vega:OTTHUMG00000163709 8 8p23.1 homolog of rat pragma of Rnd2 protein-coding - - - sugen kinase 223|tyrosine-protein kinase SgK223 20121230 -9606 157310 PEBP4 UNQ1933/PRO4408 CORK-1|CORK1|GWTM1933|PEBP-4|PRO4408|hPEBP4 HGNC:28319|MIM:612473|Ensembl:ENSG00000134020|HPRD:11424|Vega:OTTHUMG00000163749 8 8p21.3 phosphatidylethanolamine-binding protein 4 protein-coding PEBP4 phosphatidylethanolamine-binding protein 4 O cousin-of-RKIP 1 protein|protein cousin-of-RKIP 1 20121230 -9606 157313 CDCA2 - Repo-Man HGNC:14623|Ensembl:ENSG00000184661|HPRD:13014|Vega:OTTHUMG00000099429 8 8p21.2 cell division cycle associated 2 protein-coding CDCA2 cell division cycle associated 2 O cell division cycle-associated protein 2|protein phosphatase 1 [gamma] (PPP1R3A) binding protein Repo-Man|recruits PP1 onto mitotic chromatin at anaphase protein 20121230 -9606 157317 CYCSP55 - CYCSL1|HCP15|HS11|bA513I15.3 HGNC:21252 6 6p21.31 cytochrome c, somatic pseudogene 55 pseudo CYCSP55 cytochrome c, somatic pseudogene 55 O - 20121230 -9606 157376 FER1L6-AS2 - C8orf78 HGNC:26534|HPRD:08138 8 8q24.13 FER1L6 antisense RNA 2 unknown FER1L6-AS2 FER1L6 antisense RNA 2 O - 20121021 -9606 157378 TMEM65 - - HGNC:25203|Ensembl:ENSG00000164983|HPRD:14102|Vega:OTTHUMG00000165021 8 8q24.13 transmembrane protein 65 protein-coding TMEM65 transmembrane protein 65 O - 20121230 -9606 157381 LOC157381 - - - 8 8q24.13 uncharacterized LOC157381 miscRNA - - - - 20121230 -9606 157489 SDAD1P1 - - HGNC:31403 8 8p21.2 SDA1 domain containing 1 pseudogene 1 pseudo SDAD1P1 SDA1 domain containing 1 pseudogene 1 O - 20121230 -9606 157503 LOC157503 - - - 8 8q11.23 uncharacterized LOC157503 protein-coding - - - - 20120508 -9606 157506 RDH10 UNQ9375/PRO34191 SDR16C4 HGNC:19975|MIM:607599|Ensembl:ENSG00000121039|HPRD:07605|Vega:OTTHUMG00000164492 8 8q21.11 retinol dehydrogenase 10 (all-trans) protein-coding RDH10 retinol dehydrogenase 10 (all-trans) O retinol dehydrogenase 10|short chain dehydrogenase/reductase family 16C, member 4 20121230 -9606 157530 ST13P6 - FAM10A6|FAM10A6P HGNC:18557 8 8q24.22 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 6 pseudo ST13P6 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 6 O - 20121230 -9606 157556 C8orf56 - - HGNC:28595 8 8q22.3 chromosome 8 open reading frame 56 miscRNA C8orf56 chromosome 8 open reading frame 56 O - 20121230 -9606 157562 LOC157562 - - - 8 8q22.3 uncharacterized LOC157562 protein-coding - - - - 20120508 -9606 157567 ANKRD46 - ANK-S|GENX-115279 HGNC:27229|Ensembl:ENSG00000186106|HPRD:14103|Vega:OTTHUMG00000164724 8 8q22.2 ankyrin repeat domain 46 protein-coding ANKRD46 ankyrin repeat domain 46 O ankyrin repeat domain-containing protein 46|ankyrin repeat small protein 20121230 -9606 157570 ESCO2 - 2410004I17Rik|EFO2|RBS HGNC:27230|MIM:609353|Ensembl:ENSG00000171320|HPRD:18564|Vega:OTTHUMG00000163901 8 8p21.1 establishment of cohesion 1 homolog 2 (S. cerevisiae) protein-coding ESCO2 establishment of cohesion 1 homolog 2 (S. cerevisiae) O ECO1 homolog 2|N-acetyltransferase ESCO2 20121230 -9606 157574 FBXO16 - FBX16 HGNC:13618|MIM:608519|Ensembl:ENSG00000214050|HPRD:16347|Vega:OTTHUMG00000102147 8 8p21.1 F-box protein 16 protein-coding FBXO16 F-box protein 16 O F-box only protein 16 20121230 -9606 157627 LINC00599 - Rncr3 HGNC:27231 8 8p23.1 long intergenic non-protein coding RNA 599 miscRNA LINC00599 long intergenic non-protein coding RNA 599 O - 20121230 -9606 157638 FAM84B - BCMP101|NSE2 HGNC:24166|MIM:609483|Ensembl:ENSG00000168672|HPRD:11403|Vega:OTTHUMG00000165034 8 8q24.21 family with sequence similarity 84, member B protein-coding FAM84B family with sequence similarity 84, member B O breast cancer membrane protein 101|breast cancer membrane-associated protein 101|neurological/sensory 2|protein FAM84B 20121230 -9606 157657 C8orf37 - CORD16|RP64|smalltalk HGNC:27232|MIM:614477|Ensembl:ENSG00000156172|HPRD:14104|Vega:OTTHUMG00000164663 8 8q22.1 chromosome 8 open reading frame 37 protein-coding C8orf37 chromosome 8 open reading frame 37 O protein C8orf37 20121230 -9606 157667 LOC157667 - - - 8 8q22.1 myosin, light chain 12A, regulatory, non-sarcomeric pseudogene pseudo - - - - 20121230 -9606 157680 VPS13B - CHS1|COH1 HGNC:2183|MIM:607817|Ensembl:ENSG00000132549|HPRD:06379|Vega:OTTHUMG00000140383 8 8q22.2 vacuolar protein sorting 13 homolog B (yeast) protein-coding VPS13B vacuolar protein sorting 13 homolog B (yeast) O cohen syndrome protein 1|vacuolar protein sorting-associated protein 13B 20121230 -9606 157693 FAM87A - - HGNC:27233 8 8p23.3 family with sequence similarity 87, member A unknown FAM87A family with sequence similarity 87, member A O - 20121230 -9606 157695 C8orf42 - Inm01|Tdrp HGNC:26951|Ensembl:ENSG00000180190|HPRD:13740|Vega:OTTHUMG00000163593 8 8p23.3 chromosome 8 open reading frame 42 protein-coding C8orf42 chromosome 8 open reading frame 42 O testis development-related protein|uncharacterized protein C8orf42 20121230 -9606 157697 ERICH1 HSPC319 - HGNC:27234|Ensembl:ENSG00000104714|HPRD:14105|Vega:OTTHUMG00000129163 8 8p23.3 glutamate-rich 1 protein-coding ERICH1 glutamate-rich 1 O glutamate-rich protein 1 20121230 -9606 157708 SEC11B - SEC11L2|SPCS4B HGNC:31884 8 8q11.23 SEC11 homolog B (S. cerevisiae) pseudo SEC11B SEC11 homolog B (S. cerevisiae) O - 20121230 -9606 157713 LYPLA1P3 - - HGNC:44007 6 6q13 lysophospholipase I pseudogene 3 pseudo LYPLA1P3 lysophospholipase I pseudogene 3 O - 20121230 -9606 157724 SLC7A13 - AGT-1|AGT1|XAT2 HGNC:23092|Ensembl:ENSG00000164893|HPRD:15397|Vega:OTTHUMG00000163663 8 8q21.3 solute carrier family 7 (anionic amino acid transporter), member 13 protein-coding SLC7A13 solute carrier family 7 (anionic amino acid transporter), member 13 O X-amino acid transporter 2|amino acid transporter XAT2|sodium-independent aspartate/glutamate transporter 1|solute carrier family 7 member 13|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 20121230 -9606 157739 TDH - SDR14E1P HGNC:15547|HPRD:10264 8 8p23.1 L-threonine dehydrogenase pseudo TDH L-threonine dehydrogenase O - 20121230 -9606 157740 LOC157740 - - - 8 8p23.1 uncharacterized protein C8orf9 unknown - - - - 20120710 -9606 157753 TMEM74 - NET36 HGNC:26409|MIM:613935|Ensembl:ENSG00000164841|HPRD:08702|Vega:OTTHUMG00000164881 8 8q23.1 transmembrane protein 74 protein-coding TMEM74 transmembrane protein 74 O - 20121230 -9606 157769 FAM91A1 - - HGNC:26306|Ensembl:ENSG00000176853|HPRD:08676|Vega:OTTHUMG00000133021 8 8q24.13 family with sequence similarity 91, member A1 protein-coding FAM91A1 family with sequence similarity 91, member A1 O protein FAM91A1|skeletal muscle cells re-entry induced 20121230 -9606 157773 C8orf48 - - HGNC:26345|Ensembl:ENSG00000164743|HPRD:16922|Vega:OTTHUMG00000165482 8 8p22 chromosome 8 open reading frame 48 protein-coding C8orf48 chromosome 8 open reading frame 48 O uncharacterized protein C8orf48 20121230 -9606 157777 MCMDC2 - C8orf45 HGNC:26368|Ensembl:ENSG00000178460|HPRD:08072|Vega:OTTHUMG00000157068 8 8q13.1 minichromosome maintenance domain containing 2 protein-coding MCMDC2 minichromosome maintenance domain containing 2 O MCM domain-containing protein 2|MCM domain-containing protein C8orf45 20121230 -9606 157807 CLVS1 - CRALBPL|RLBP1L1 HGNC:23139|MIM:611292|Ensembl:ENSG00000177182|HPRD:14581|Vega:OTTHUMG00000164334 8 8q12.3 clavesin 1 protein-coding CLVS1 clavesin 1 O clavesin-1|retinaldehyde binding protein 1-like 1|retinaldehyde-binding protein 1-like 1 20121230 -9606 157848 NKX6-3 - NKX6.3 HGNC:26328|MIM:610772|Ensembl:ENSG00000165066|HPRD:08053|Vega:OTTHUMG00000164083 8 8p11.21 NK6 homeobox 3 protein-coding NKX6-3 NK6 homeobox 3 O NK6 transcription factor related, locus 3|homeobox protein Nkx-6.3 20121230 -9606 157855 KCNU1 - KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 HGNC:18867|Ensembl:ENSG00000215262|Vega:OTTHUMG00000163981 8 8p11.23 potassium channel, subfamily U, member 1 protein-coding KCNU1 potassium channel, subfamily U, member 1 O Calcium-activated potassium channel subunit alpha-3|Calcium-activated potassium channel, subfamily M subunit alpha-3|Slowpoke homolog 3|potassium channel subfamily U member 1 20121230 -9606 157860 LOC157860 - - - 8 8p11.23 uncharacterized LOC157860 protein-coding - - - - 20120508 -9606 157869 SBSPON - C8orf84|RPESP HGNC:30362|Ensembl:ENSG00000164764|HPRD:15271|Vega:OTTHUMG00000157144 8 8q21.11 somatomedin B and thrombospondin, type 1 domain containing protein-coding SBSPON somatomedin B and thrombospondin, type 1 domain containing O RPE spondin|RPE-spondin|somatomedin-B and thrombospondin type-1 domain-containing protein 20121230 -9606 157916 IL6RP1 - IL6RL1 HGNC:6020 9 9q22.2 interleukin 6 receptor pseudogene 1 pseudo IL6RP1 interleukin 6 receptor pseudogene 1 O - 20121230 -9606 157922 CAMSAP1 RP11-100C15.2 PRO2405|bA100C15.1 HGNC:19946|MIM:613774|Ensembl:ENSG00000130559|HPRD:13001|Vega:OTTHUMG00000020918 9 9q34.3 calmodulin regulated spectrin-associated protein 1 protein-coding CAMSAP1 calmodulin regulated spectrin-associated protein 1 O bA100C15.1 (novel protein)|calmodulin-regulated spectrin-associated protein 1 20121230 -9606 157927 C9orf62 RP11-555H7.1 - HGNC:28581|Ensembl:ENSG00000178243|Vega:OTTHUMG00000020900 9 9q34.3 chromosome 9 open reading frame 62 protein-coding C9orf62 chromosome 9 open reading frame 62 O putative uncharacterized protein C9orf62 20121230 -9606 157931 LOC157931 - - - 9 9q34.3 uncharacterized LOC157931 protein-coding - - - - 20120508 -9606 157956 CDC20P1 - CDC20P HGNC:29487|Vega:OTTHUMG00000020142 9 9q21.33 cell division cycle 20 homolog (S. cerevisiae) pseudogene 1 pseudo CDC20P1 cell division cycle 20 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 157983 C9orf66 - RP11-59O6.1 HGNC:26436|Ensembl:ENSG00000183784|HPRD:12971|Vega:OTTHUMG00000021017 9 9p24.3 chromosome 9 open reading frame 66 protein-coding C9orf66 chromosome 9 open reading frame 66 O uncharacterized protein C9orf66 20121230 -9606 158011 IFNA12P - IFNP12|IFNWP12 HGNC:5443 9 9p21.3 interferon, alpha 12, pseudogene pseudo IFNA12P interferon, alpha 12, pseudogene O - 20121230 -9606 158035 LINC00032 - C9orf14|NCRNA00032 HGNC:16506 9 9p21 long intergenic non-protein coding RNA 32 miscRNA LINC00032 long intergenic non-protein coding RNA 32 O - 20121230 -9606 158038 LINGO2 UNQ9234/PRO31993 LERN3|LRRN6C HGNC:21207|MIM:609793|Ensembl:ENSG00000174482|HPRD:08715|Vega:OTTHUMG00000019721 9 9p21.2 leucine rich repeat and Ig domain containing 2 protein-coding LINGO2 leucine rich repeat and Ig domain containing 2 O leucine rich repeat neuronal 6C|leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2|leucine-rich repeat neuronal protein 3|leucine-rich repeat neuronal protein 6C 20121230 -9606 158046 NXNL2 RP13-60M5.1 C9orf121|RDCVF2 HGNC:30482|Ensembl:ENSG00000130045|HPRD:12938|Vega:OTTHUMG00000020170 9 9q22.1 nucleoredoxin-like 2 protein-coding NXNL2 nucleoredoxin-like 2 O nucleoredoxin-like protein 2 20121230 -9606 158055 C9orf163 RP11-413M3.11-001 RP11-413M3.11 HGNC:26718|Ensembl:ENSG00000196366|HPRD:08211|Vega:OTTHUMG00000131725 9 9q34.3 chromosome 9 open reading frame 163 protein-coding C9orf163 chromosome 9 open reading frame 163 O uncharacterized protein C9orf163 20121230 -9606 158056 MAMDC4 RP11-216L13.11-002 AEGP HGNC:24083|Ensembl:ENSG00000177943|HPRD:12434|Vega:OTTHUMG00000020951 9 9q34.3 MAM domain containing 4 protein-coding MAMDC4 MAM domain containing 4 O MAM domain-containing protein 4|apical early endosomal glycoprotein|apical endosomal glycoprotein 20121230 -9606 158062 LCN6 RP11-216L13.2 LCN5|UNQ643|hLcn5 HGNC:17337|MIM:609379|Ensembl:ENSG00000267206|HPRD:17268|Vega:OTTHUMG00000020941 9 9q34.3 lipocalin 6 protein-coding LCN6 lipocalin 6 O epididymal-specific lipocalin LCN6|epididymal-specific lipocalin-6|lipocalin 5|lipocalin-5 20121230 -9606 158067 AK8 - C9orf98|DDX31|RP11-143F18.1 HGNC:26526|Ensembl:ENSG00000165695|HPRD:12991|Vega:OTTHUMG00000021009 9 9q34.13 adenylate kinase 8 protein-coding AK8 adenylate kinase 8 O putative adenylate kinase-like protein C9orf98 20121230 -9606 158078 EEF1A1P5 - EEF1AL3 HGNC:3200 9 9q34.13 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 pseudo EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 O - 20121230 -9606 158104 RPS10P3 - RPS10_10_994 HGNC:23684 9 9q22.1 ribosomal protein S10 pseudogene 3 pseudo RPS10P3 ribosomal protein S10 pseudogene 3 O - 20121230 -9606 158131 OR1Q1 - HSTPCR106|OR1Q2|OR1Q3|OR9-25|OR9-A|OST226|OST226OR9-A|TPCR106 HGNC:8223|Ensembl:ENSG00000165202|HPRD:14926|Vega:OTTHUMG00000020615 9 9q33.2 olfactory receptor, family 1, subfamily Q, member 1 protein-coding OR1Q1 olfactory receptor, family 1, subfamily Q, member 1 O olfactory receptor 1Q1|olfactory receptor 1Q2|olfactory receptor 1Q3|olfactory receptor 9-A|olfactory receptor OR9-25|olfactory receptor TPCR106|olfactory receptor, family 1, subfamily Q, member 2|olfactory receptor, family 1, subfamily Q, member 3 20121230 -9606 158135 TTLL11 RP11-429D3.1 C9orf20|bA244O19.1 HGNC:18113|Ensembl:ENSG00000175764|HPRD:10047|Vega:OTTHUMG00000020597 9 9q33.2 tubulin tyrosine ligase-like family, member 11 protein-coding TTLL11 tubulin tyrosine ligase-like family, member 11 O tubulin polyglutamylase TTLL11|tubulin--tyrosine ligase-like protein 11 20121230 -9606 158158 RASEF - RAB45 HGNC:26464|MIM:611344|Ensembl:ENSG00000165105|HPRD:08337|Vega:OTTHUMG00000020100 9 9q21.32 RAS and EF-hand domain containing protein-coding RASEF RAS and EF-hand domain containing O ras and EF-hand domain-containing protein|ras-related protein Rab-45 20121230 -9606 158160 HSD17B7P2 RP11-291L22.1 HSD17B7|Hsd17b_2|bA291L22.1 HGNC:28120|HPRD:14106 10 10p11.1 hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2 pseudo HSD17B7P2 hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2 O - 20121230 -9606 158172 SERPINH1P1 - SERPINHP1|bA571F15.6|pshsp47 HGNC:19917 9 9p13.3 serpin peptidase inhibitor, clade H1, pseudogene 1 pseudo SERPINH1P1 serpin peptidase inhibitor, clade H1, pseudogene 1 O - 20121230 -9606 158219 TTC39B RP11-224J22.1 C9orf52 HGNC:23704|MIM:613574|Ensembl:ENSG00000155158|HPRD:10801|Vega:OTTHUMG00000019581 9 9p22.3 tetratricopeptide repeat domain 39B protein-coding TTC39B tetratricopeptide repeat domain 39B O TPR repeat protein 39B|tetratricopeptide repeat protein 39B 20121230 -9606 158222 LDHAP4 - LDHAL4 HGNC:6539 9 9p22.3 lactate dehydrogenase A pseudogene 4 pseudo LDHAP4 lactate dehydrogenase A pseudogene 4 O - 20121230 -9606 158228 FAM201A - C9orf122 HGNC:27239 9 9p13.1 family with sequence similarity 201, member A miscRNA FAM201A family with sequence similarity 201, member A O - 20121230 -9606 158234 TRMT10B - RG9MTD3|RP11-3J10.9|bA3J10.9 HGNC:26454|Ensembl:ENSG00000165275|HPRD:15242|Vega:OTTHUMG00000019933 9 9p13.2 tRNA methyltransferase 10 homolog B (S. cerevisiae) protein-coding TRMT10B tRNA methyltransferase 10 homolog B (S. cerevisiae) O RNA (guanine-9-) methyltransferase domain containing 3|RNA (guanine-9-)-methyltransferase domain-containing protein 3|tRNA methyltransferase 10 homolog B 20121230 -9606 158248 TTC16 RP11-56D16.6 - HGNC:26536|Ensembl:ENSG00000167094|HPRD:15581|Vega:OTTHUMG00000020711 9 9q34.11 tetratricopeptide repeat domain 16 protein-coding TTC16 tetratricopeptide repeat domain 16 O TPR repeat protein 16|tetratricopeptide repeat protein 16 20121230 -9606 158257 MIRLET7DHG - - HGNC:37186 9 9q22.32 MIRLET7D host gene (non-protein coding) miscRNA MIRLET7DHG MIRLET7D host gene (non-protein coding) O - 20121230 -9606 158263 FLJ31713 - - - 9 9q32 uncharacterized protein FLJ31713 unknown - - - - 20120511 -9606 158293 FAM120AOS RP11-165J3.1 C9orf10OS HGNC:23389|Ensembl:ENSG00000188938|HPRD:12931|Vega:OTTHUMG00000020251 9 9q22.31 family with sequence similarity 120A opposite strand protein-coding FAM120AOS family with sequence similarity 120A opposite strand O putative FAM120A opposite strand protein 20121230 -9606 158295 MGC24103 - - - 9 9p22.3 uncharacterized MGC24103 unknown - - - - 20121230 -9606 158297 FAM154A RP11-220B22.3 C9orf138 HGNC:28566|Ensembl:ENSG00000155875|HPRD:16676|Vega:OTTHUMG00000019609 9 9p22.1 family with sequence similarity 154, member A protein-coding FAM154A family with sequence similarity 154, member A O 4930500O09Rik|protein FAM154A 20121230 -9606 158314 LINC00475 - C9orf44 HGNC:23569 9 9q22.31 long intergenic non-protein coding RNA 475 miscRNA LINC00475 long intergenic non-protein coding RNA 475 O - 20121230 -9606 158326 FREM1 RP11-265B7.2 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 HGNC:23399|MIM:608944|Ensembl:ENSG00000164946|HPRD:09865|Vega:OTTHUMG00000019575 9 9p22.3 FRAS1 related extracellular matrix 1 protein-coding FREM1 FRAS1 related extracellular matrix 1 O FRAS1-related extracellular matrix protein 1|extracellular matrix protein QBRICK 20121230 -9606 158345 RPL4P5 - RPL4_3_960 HGNC:35699 9 9p24.1 ribosomal protein L4 pseudogene 5 pseudo RPL4P5 ribosomal protein L4 pseudogene 5 O - 20121230 -9606 158358 KIAA2026 - - HGNC:23378|Ensembl:ENSG00000183354|HPRD:18566|Vega:OTTHUMG00000019507 9 9p24.1 KIAA2026 protein-coding KIAA2026 KIAA2026 O Putative uncharacterized protein ENSP00000382813|uncharacterized protein KIAA2026 20121230 -9606 158373 YBX1P10 - BA327L3.4 HGNC:42432 9 9p13.1 Y box binding protein 1 pseudogene 10 pseudo YBX1P10 Y box binding protein 1 pseudogene 10 O - 20121230 -9606 158376 LOC158376 - - - 9 9p13.3 uncharacterized LOC158376 miscRNA - - - - 20121230 -9606 158381 ATP8B5P - FetA HGNC:27245|HPRD:18739 9 9p13.3 ATPase, class I, type 8B, member 5, pseudogene pseudo ATP8B5P ATPase, class I, type 8B, member 5, pseudogene O - 20121230 -9606 158383 YWHAZP6 - - HGNC:30849 9 9p13.3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 6 pseudo YWHAZP6 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 6 O - 20121230 -9606 158399 ZNF483 RP11-16L21.9 ZKSCAN16 HGNC:23384|Ensembl:ENSG00000173258|HPRD:18345|Vega:OTTHUMG00000020490 9 9q31.3 zinc finger protein 483 protein-coding ZNF483 zinc finger protein 483 O zinc finger protein HIT-10|zinc finger protein with KRAB and SCAN domains 16 20121230 -9606 158401 C9orf84 RP11-16L21.4 - HGNC:26535|Ensembl:ENSG00000165181|HPRD:12982|Vega:OTTHUMG00000020495 9 9q31.3 chromosome 9 open reading frame 84 protein-coding C9orf84 chromosome 9 open reading frame 84 O uncharacterized protein C9orf84 20121230 -9606 158402 LOC158402 - - - 9 9q32 uncharacterized LOC158402 miscRNA - - - - 20120722 -9606 158405 KIAA1958 RP11-276E15.5 - HGNC:23427|Ensembl:ENSG00000165185|HPRD:11173|Vega:OTTHUMG00000020508 9 9q32 KIAA1958 protein-coding KIAA1958 KIAA1958 O uncharacterized protein KIAA1958 20121230 -9606 158427 TSTD2 RP11-244N9.5 C9orf97 HGNC:30087|Ensembl:ENSG00000136925|HPRD:16679|Vega:OTTHUMG00000020328 9 9q22.33 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 protein-coding TSTD2 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 O PP4189|rhodanese domain-containing protein 2|thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 20121230 -9606 158431 ZNF782 - - HGNC:33110|Ensembl:ENSG00000196597|HPRD:16914|Vega:OTTHUMG00000020310 9 9q22.33 zinc finger protein 782 protein-coding ZNF782 zinc finger protein 782 O - 20121230 -9606 158434 LOC158434 - - - 9 9q22.33 uncharacterized LOC158434 protein-coding - - - uncharacterized protein LOC158434 20121230 -9606 158435 LOC158435 - - - 9 9q22.32 uncharacterized LOC158435 miscRNA - - - uncharacterized protein LOC158435 20121230 -9606 158441 PSMA7P - - HGNC:20631 9 9q22.32 proteasome (prosome, macropain) subunit, alpha type, 7 pseudogene pseudo PSMA7P proteasome (prosome, macropain) subunit, alpha type, 7 pseudogene O - 20121230 -9606 158452 ASS1P3 - ASSP3 HGNC:766 9 9q21.2 argininosuccinate synthetase 1 pseudogene 3 pseudo ASS1P3 argininosuccinate synthetase 1 pseudogene 3 O - 20121230 -9606 158471 PRUNE2 RP11-214N16.3 A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|RP11-58J3.2|bA214N16.3 HGNC:25209|MIM:610691|Ensembl:ENSG00000106772|HPRD:12970|Vega:OTTHUMG00000020047 9 9q21.2 prune homolog 2 (Drosophila) protein-coding PRUNE2 prune homolog 2 (Drosophila) O BCH motif-containing molecule at the carboxyl terminal region 1|BNIP2 motif containing molecule at the carboxyl terminal region 1|BNIP2 motif-containing molecule at the C-terminal region 1|protein prune homolog 2|truncated PRUNE2 20121230 -9606 158506 ZNF645 - HAKAIL HGNC:26371|Ensembl:ENSG00000175809|HPRD:06545|Vega:OTTHUMG00000021242 X Xp22.11 zinc finger protein 645 protein-coding ZNF645 zinc finger protein 645 O E3 ubiquitin ligase|E3 ubiquitin-protein ligase ZNF645 20121230 -9606 158511 CSAG1 - CSAGE|CT24.1 HGNC:24294|Ensembl:ENSG00000198930|HPRD:06475|Vega:OTTHUMG00000022648 X Xq28 chondrosarcoma associated gene 1 protein-coding CSAG1 chondrosarcoma associated gene 1 O cancer/testis antigen 24.1|cancer/testis antigen CSAGE|cancer/testis antigen family 24, member 1|putative chondrosarcoma-associated gene 1 protein 20121230 -9606 158521 FMR1NB - CT37|NY-SAR-35|NYSAR35 HGNC:26372|Ensembl:ENSG00000176988|HPRD:06546|Vega:OTTHUMG00000022608 X Xq28 fragile X mental retardation 1 neighbor protein-coding FMR1NB fragile X mental retardation 1 neighbor O cancer/testis antigen 37|fragile X mental retardation 1 neighbor protein|sarcoma antigen NY-SAR-35 20121230 -9606 158572 LOC158572 - - HPRD:18740 X Xp11.23 uncharacterized LOC158572 miscRNA - - - - 20121230 -9606 158584 FAAH2 RP11-479E16.1 AMDD HGNC:26440|MIM:300654|Ensembl:ENSG00000165591|HPRD:06551|Vega:OTTHUMG00000021684 X Xp11.21 fatty acid amide hydrolase 2 protein-coding FAAH2 fatty acid amide hydrolase 2 O amidase domain containing|amidase domain-containing protein|anandamide amidohydrolase 2|fatty-acid amide hydrolase 2|oleamide hydrolase 2 20121230 -9606 158586 ZXDB - ZNF905|dJ83L6.1 HGNC:13199|MIM:300236|Ensembl:ENSG00000198455|HPRD:11777|Vega:OTTHUMG00000021685 X Xp11.21 zinc finger, X-linked, duplicated B protein-coding ZXDB zinc finger, X-linked, duplicated B O zinc finger X-linked protein ZXDB 20121230 -9606 158674 RPSAP3 - LAMR1P3|RPSA_21_1392 HGNC:19792 14 14q24.3 ribosomal protein SA pseudogene 3 pseudo RPSAP3 ribosomal protein SA pseudogene 3 O - 20121230 -9606 158696 LOC158696 - - HPRD:06549 X Xq26.3 uncharacterized LOC158696 miscRNA - - - - 20121230 -9606 158724 FAM47A RP13-202B6.1 - HGNC:29962|Ensembl:ENSG00000185448|HPRD:10947|Vega:OTTHUMG00000021339 X Xp21.1 family with sequence similarity 47, member A protein-coding FAM47A family with sequence similarity 47, member A O protein FAM47A 20121230 -9606 158747 MOSPD2 - - HGNC:28381|Ensembl:ENSG00000130150|HPRD:06642|Vega:OTTHUMG00000021170 X Xp22.2 motile sperm domain containing 2 protein-coding MOSPD2 motile sperm domain containing 2 O motile sperm domain-containing protein 2 20121230 -9606 158763 ARHGAP36 RP13-102H20.1 - HGNC:26388|Ensembl:ENSG00000147256|HPRD:06547|Vega:OTTHUMG00000022402 X Xq26.1 Rho GTPase activating protein 36 protein-coding ARHGAP36 Rho GTPase activating protein 36 O rho GTPase-activating protein 36 20121230 -9606 158781 LOC158781 - - - X Xp11.4 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide pseudogene pseudo - - - - 20121230 -9606 158787 RIBC1 RP3-339A18.5 2610028I09Rik HGNC:26537|Ensembl:ENSG00000158423|HPRD:06553|Vega:OTTHUMG00000021615 X Xp11.22 RIB43A domain with coiled-coils 1 protein-coding RIBC1 RIB43A domain with coiled-coils 1 O RIB43A-like with coiled-coils protein 1 20121230 -9606 158798 AKAP14 - AKAP28|PRKA14 HGNC:24061|MIM:300462|Ensembl:ENSG00000186471|HPRD:02353|Vega:OTTHUMG00000022285 X Xq24 A kinase (PRKA) anchor protein 14 protein-coding AKAP14 A kinase (PRKA) anchor protein 14 O A-kinase anchor protein 14|A-kinase anchor protein 28 kDa|A-kinase anchoring protein 28|AKAP 28|AKAP-14|protein kinase A-anchoring protein 14 20121230 -9606 158800 RHOXF1 - OTEX|PEPP1 HGNC:29993|MIM:300446|Ensembl:ENSG00000101883|HPRD:02345|HPRD:15954|Vega:OTTHUMG00000022290 X Xq24 Rhox homeobox family, member 1 protein-coding RHOXF1 Rhox homeobox family, member 1 O PEPP subfamily gene 1|ovary-, testis- and epididymis-expressed gene protein|paired-like homeobox protein PEPP-1|rhox homeobox family member 1 20121230 -9606 158801 NKAPP1 - CXorf42 HGNC:26706|HPRD:06560 X Xq24 NFKB activating protein pseudogene 1 pseudo NKAPP1 NFKB activating protein pseudogene 1 O - 20121230 -9606 158809 MAGEB6 - CT3.4|MAGE-B6|MAGEB6A HGNC:23796|MIM:300467|Ensembl:ENSG00000176746|HPRD:06628|Vega:OTTHUMG00000021285 X Xp21.3 melanoma antigen family B, 6 protein-coding MAGEB6 melanoma antigen family B, 6 O MAGE-B6 antigen|cancer/testis antigen 3.4|cancer/testis antigen family 3, member 4|melanoma-associated antigen B6 20121230 -9606 158830 CXorf65 - - HGNC:33713|Ensembl:ENSG00000204165|HPRD:18741|Vega:OTTHUMG00000021785 X Xq13.1 chromosome X open reading frame 65 protein-coding CXorf65 chromosome X open reading frame 65 O uncharacterized protein CXorf65 20121230 -9606 158833 AWAT1 RP13-26D14.7 DGA2|DGAT2L3 HGNC:23252|Ensembl:ENSG00000204195|HPRD:10296|Vega:OTTHUMG00000021773 X Xq13.1 acyl-CoA wax alcohol acyltransferase 1 protein-coding AWAT1 acyl-CoA wax alcohol acyltransferase 1 O diacyl-glycerol acyltransferase 2|diacylglycerol O-acyltransferase 2-like 3|diacylglycerol O-acyltransferase 2-like protein 3|diacylglycerol acyltransferase 2|long-chain-alcohol O-fatty-acyltransferase 1 20121230 -9606 158835 AWAT2 - ARAT|DC4|DGAT2L4|MFAT|WS HGNC:23251|Ensembl:ENSG00000147160|HPRD:16799|Vega:OTTHUMG00000021763 X Xq13.1 acyl-CoA wax alcohol acyltransferase 2 protein-coding AWAT2 acyl-CoA wax alcohol acyltransferase 2 O acyl-CoA retinol O-fatty-acyltransferase|diacylglycerol O-acyltransferase 2-like protein 4|diacylglycerol O-acyltransferase candidate 4|long-chain-alcohol O-fatty-acyltransferase 2|multifunctional O-acyltransferase|retinol O-fatty-acyltransferase 20121230 -9606 158863 LOC158863 - - - X Xq13.1 uncharacterized LOC158863 protein-coding - - - - 20111113 -9606 158866 ZDHHC15 UNQ1969 MRX91 HGNC:20342|MIM:300576|Ensembl:ENSG00000102383|HPRD:06758|Vega:OTTHUMG00000021866 X Xq13.3 zinc finger, DHHC-type containing 15 protein-coding ZDHHC15 zinc finger, DHHC-type containing 15 O DHHC-15|palmitoyltransferase ZDHHC15|zinc finger DHHC domain-containing protein 15|zinc finger, DHHC domain containing 15 20121230 -9606 158880 USP51 - - HGNC:23086|Ensembl:ENSG00000247746|HPRD:07167|Vega:OTTHUMG00000021656 X Xp11.21 ubiquitin specific peptidase 51 protein-coding USP51 ubiquitin specific peptidase 51 O deubiquitinating enzyme 51|ubiquitin carboxyl-terminal hydrolase 51|ubiquitin thioesterase 51|ubiquitin thiolesterase 51|ubiquitin-specific-processing protease 51 20121230 -9606 158905 PHF10P1 - XAP135P HGNC:23210 X Xq28 PHD finger protein 10 pseudogene 1 pseudo PHF10P1 PHD finger protein 10 pseudogene 1 O - 20121230 -9606 158931 TCEAL6 GHc-351F8.2 Tceal3 HGNC:24553|Ensembl:ENSG00000204071|HPRD:17311|Vega:OTTHUMG00000022050 X Xq22.1 transcription elongation factor A (SII)-like 6 protein-coding TCEAL6 transcription elongation factor A (SII)-like 6 O TCEA-like protein 6|transcription elongation factor A (SII)-like 3|transcription elongation factor A protein-like 6|transcription elongation factor S-II protein-like 6 20121230 -9606 158948 LOC158948 - - - X Xq22.1 protein kinase C, iota pseudogene pseudo - - - - 20121230 -9606 158960 LOC158960 - - - X Xq28 uncharacterized protein BC009467 miscRNA - - - - 20120722 -9606 158983 H2BFWT - - HGNC:27252|MIM:300507|Ensembl:ENSG00000123569|HPRD:15956|Vega:OTTHUMG00000022120 X Xq22.2 H2B histone family, member W, testis-specific protein-coding H2BFWT H2B histone family, member W, testis-specific O histone H2B type W-T 20121230 -9606 159007 LOC159007 - - - X Xq24 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) pseudogene pseudo - - - - 20121230 -9606 159013 CXorf38 - - HGNC:28589|Ensembl:ENSG00000185753|HPRD:06651|Vega:OTTHUMG00000024104 X Xp11.4 chromosome X open reading frame 38 protein-coding CXorf38 chromosome X open reading frame 38 O uncharacterized protein CXorf38 20121230 -9606 159090 FAM122B RP11-308B5.5 SPACIA2 HGNC:30490|Ensembl:ENSG00000156504|HPRD:06614|Vega:OTTHUMG00000022461 X Xq26.3 family with sequence similarity 122B protein-coding FAM122B family with sequence similarity 122B O protein FAM122B|synoviocyte proliferation associated in collagen-induced arthritis 2 20121230 -9606 159091 FAM122C RP3-473B4.1 - HGNC:25202|Ensembl:ENSG00000156500|HPRD:06615|Vega:OTTHUMG00000022716 X Xq26.3 family with sequence similarity 122C protein-coding FAM122C family with sequence similarity 122C O protein FAM122C 20121230 -9606 159119 HSFY2 - HSF2L|HSFY HGNC:23950|Ensembl:ENSG00000169953|HPRD:13680|Vega:OTTHUMG00000041947 Y Yq11.222 heat shock transcription factor, Y linked 2 protein-coding HSFY2 heat shock transcription factor, Y linked 2 O heat shock transcription factor 2-like protein|heat shock transcription factor, Y-linked 20121230 -9606 159125 RBMY2EP - - HGNC:23890 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member E pseudogene pseudo RBMY2EP RNA binding motif protein, Y-linked, family 2, member E pseudogene O - 20121230 -9606 159162 RBMY2FP - - HGNC:23891 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member F pseudogene pseudo RBMY2FP RNA binding motif protein, Y-linked, family 2, member F pseudogene O - 20121230 -9606 159163 RBMY1F - YRRM2 HGNC:23974|Ensembl:ENSG00000169800|HPRD:15232|Vega:OTTHUMG00000043593 Y Yq11.223 RNA binding motif protein, Y-linked, family 1, member F protein-coding RBMY1F RNA binding motif protein, Y-linked, family 1, member F O RNA-binding motif protein, Y chromosome, family 1 member F/J|y chromosome RNA recognition motif 2 20121209 -9606 159195 USP54 RP11-137L10.4 C10orf29|bA137L10.3|bA137L10.4 HGNC:23513|Ensembl:ENSG00000166348|HPRD:15641|Vega:OTTHUMG00000018469 10 10q22.2 ubiquitin specific peptidase 54 protein-coding USP54 ubiquitin specific peptidase 54 O inactive ubiquitin carboxyl-terminal hydrolase 54|inactive ubiquitin-specific peptidase 54|ubiquitin specific protease 54|ubiquitin specific proteinase 54 20121230 -9606 159296 NKX2-3 RP11-85A1.2 CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 HGNC:7836|MIM:606727|Ensembl:ENSG00000119919|HPRD:05992|Vega:OTTHUMG00000018887 10 10q24.2 NK2 homeobox 3 protein-coding NKX2-3 NK2 homeobox 3 O NK2 transcription factor related, locus 3|homeobox protein NK-2 homolog C|homeobox protein Nkx-2.3 20121230 -9606 159371 SLC35G1 - C10orf60|TMEM20 HGNC:26607|Ensembl:ENSG00000176273|HPRD:15531|Vega:OTTHUMG00000018779 10 10q23.33 solute carrier family 35, member G1 protein-coding SLC35G1 solute carrier family 35, member G1 O solute carrier family 35 member G1|transmembrane protein 20 20121230 -9606 159686 CCDC147 RP11-554P13.1 C10orf80|bA127L20.4|bA127L20.5|bA554P13.1 HGNC:26676|Ensembl:ENSG00000120051|HPRD:16583|Vega:OTTHUMG00000019007 10 10q25.1 coiled-coil domain containing 147 protein-coding CCDC147 coiled-coil domain containing 147 O bA127L20.4 (novel protein)|bA127L20.5 (novel protein)|coiled-coil domain-containing protein 147 20121230 -9606 159770 CBX3P1 - - HGNC:33950 11 11p14.1 chromobox homolog 3 pseudogene 1 pseudo CBX3P1 chromobox homolog 3 pseudogene 1 O - 20121230 -9606 159963 SLC5A12 - SMCT2 HGNC:28750|MIM:612455|Ensembl:ENSG00000148942|HPRD:15395|Vega:OTTHUMG00000150706 11 11p14.2 solute carrier family 5 (sodium/glucose cotransporter), member 12 protein-coding SLC5A12 solute carrier family 5 (sodium/glucose cotransporter), member 12 O electroneutral sodium monocarboxylate cotransporter|low-affinity sodium-lactate cotransporter|sodium-coupled monocarboxylate transporter 2|sodium-iodide related cotransporter|solute carrier family 5 member 12 20121230 -9606 159989 CCDC67 - - HGNC:26344|Ensembl:ENSG00000165325|HPRD:08689|Vega:OTTHUMG00000167441 11 11q21 coiled-coil domain containing 67 protein-coding CCDC67 coiled-coil domain containing 67 O coiled-coil domain-containing protein 67 20121230 -9606 160065 PATE1 - PATE HGNC:24664|MIM:606861|Ensembl:ENSG00000171053|HPRD:06034|Vega:OTTHUMG00000165855 11 11q24.2 prostate and testis expressed 1 protein-coding PATE1 prostate and testis expressed 1 O expressed in prostate and testis|prostate and testis expressed protein 1 20121230 -9606 160140 C11orf65 - - HGNC:28519|Ensembl:ENSG00000166323|HPRD:14579|Vega:OTTHUMG00000166489 11 11q22.3 chromosome 11 open reading frame 65 protein-coding C11orf65 chromosome 11 open reading frame 65 O uncharacterized protein C11orf65 20121230 -9606 160287 LDHAL6A - LDH6A HGNC:28335|Ensembl:ENSG00000166800|HPRD:13980|Vega:OTTHUMG00000167724 11 11p15.1 lactate dehydrogenase A-like 6A protein-coding LDHAL6A lactate dehydrogenase A-like 6A O L-lactate dehydrogenase A-like 6A 20121230 -9606 160298 C11orf42 - - HGNC:28541|Ensembl:ENSG00000180878|HPRD:14590|Vega:OTTHUMG00000133377 11 11p15.4 chromosome 11 open reading frame 42 protein-coding C11orf42 chromosome 11 open reading frame 42 O uncharacterized protein C11orf42 20121230 -9606 160313 KRT19P2 - - HGNC:33423 12 12q22 keratin 19 pseudogene 2 pseudo KRT19P2 keratin 19 pseudogene 2 O - 20121230 -9606 160335 TMTC2 - IBDBP1 HGNC:25440|Ensembl:ENSG00000179104|HPRD:13230|Vega:OTTHUMG00000169736 12 12q21.31 transmembrane and tetratricopeptide repeat containing 2 protein-coding TMTC2 transmembrane and tetratricopeptide repeat containing 2 O IBDBP1 transcript 2|IBDBP1, transcript 1|transmembrane and TPR repeat-containing protein 2 20121230 -9606 160364 CLEC12A - CLL-1|CLL1|DCAL-2|MICL HGNC:31713|MIM:612088|Ensembl:ENSG00000172322|HPRD:14719|Vega:OTTHUMG00000168396 12 12p13.2 C-type lectin domain family 12, member A protein-coding CLEC12A C-type lectin domain family 12, member A O C-type lectin domain family 12 member A|C-type lectin protein CLL-1|C-type lectin superfamily|C-type lectin-like molecule-1|dendritic cell-associated lectin 2|myeloid inhibitory C-type lectin-like receptor 20121230 -9606 160365 CLECL1 - DCAL-1|DCAL1 HGNC:24462|MIM:607467|Ensembl:ENSG00000184293|HPRD:16247|Vega:OTTHUMG00000168459 12 12p13.31 C-type lectin-like 1 protein-coding CLECL1 C-type lectin-like 1 O C-type lectin-like domain family 1|DC-associated lectin-1|dendritic cell associated lectin 1|dendritic cell-associated lectin 1|dendritic cell-associated lectin-1|type II transmembrane protein DCAL1 20121230 -9606 160410 PSMC6P2 - - HGNC:30149 12 12q15 proteasome 26S subunit, ATPase, 6 pseudogene 2 pseudo PSMC6P2 proteasome 26S subunit, ATPase, 6 pseudogene 2 O - 20121230 -9606 160418 TMTC3 - SMILE HGNC:26899|Ensembl:ENSG00000139324|HPRD:10243|Vega:OTTHUMG00000169887 12 12q21.32 transmembrane and tetratricopeptide repeat containing 3 protein-coding TMTC3 transmembrane and tetratricopeptide repeat containing 3 O transmembrane and TPR repeat-containing protein 3 20121230 -9606 160419 C12orf50 - - HGNC:26665|Ensembl:ENSG00000165805|HPRD:08764|Vega:OTTHUMG00000169869 12 12q21.32 chromosome 12 open reading frame 50 protein-coding C12orf50 chromosome 12 open reading frame 50 O uncharacterized protein C12orf50 20121230 -9606 160428 ALDH1L2 - mtFDH HGNC:26777|MIM:613584|Ensembl:ENSG00000136010|HPRD:18742|Vega:OTTHUMG00000169823 12 12q23.3 aldehyde dehydrogenase 1 family, member L2 protein-coding ALDH1L2 aldehyde dehydrogenase 1 family, member L2 O 10-formyltetrahydrofolate dehydrogenase ALDH1L2|aldehyde dehydrogenase family 1 member L2, mitochondrial|mitochondrial 10-FTHFDH|mitochondrial 10-formyltetrahydrofolate dehydrogenase|probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 20121230 -9606 160492 IFLTD1 - PAS1C1 HGNC:26683|Ensembl:ENSG00000152936|HPRD:08768|Vega:OTTHUMG00000169052 12 12p12.1 intermediate filament tail domain containing 1 protein-coding IFLTD1 intermediate filament tail domain containing 1 O intermediate filament tail domain-containing protein 1 20121230 -9606 160518 DENND5B - - HGNC:28338|Ensembl:ENSG00000170456|HPRD:11321|Vega:OTTHUMG00000169034 12 12p11.21 DENN/MADD domain containing 5B protein-coding DENND5B DENN/MADD domain containing 5B O DENN domain-containing protein 5B|rab6IP1-like protein 20121230 -9606 160622 GRASP - TAMALIN HGNC:18707|MIM:612027|Ensembl:ENSG00000161835|HPRD:17077|Vega:OTTHUMG00000169595 12 12q13.13 GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein protein-coding GRASP GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein O GRP1-associated scaffold protein|general receptor for phosphoinositides 1-associated scaffold protein 20121230 -9606 160728 SLC5A8 - AIT|SMCT|SMCT1 HGNC:19119|MIM:608044|Ensembl:ENSG00000256870|HPRD:10475|Vega:OTTHUMG00000170499 12 12q23.1 solute carrier family 5 (iodide transporter), member 8 protein-coding SLC5A8 solute carrier family 5 (iodide transporter), member 8 O apical iodide transporter|electrogenic sodium monocarboxylate cotransporter|sodium iodide-related cotransporter|sodium-coupled monocarboxylate transporter 1|solute carrier family 5 member 8 20121230 -9606 160760 PPTC7 - TA-PP2C|TAPP2C HGNC:30695|MIM:609668|Ensembl:ENSG00000196850|HPRD:18141|Vega:OTTHUMG00000169529 12 12q24.11 PTC7 protein phosphatase homolog (S. cerevisiae) protein-coding PPTC7 PTC7 protein phosphatase homolog (S. cerevisiae) O protein phosphatase PTC7 homolog 20121230 -9606 160762 CCDC63 - - HGNC:26669|Ensembl:ENSG00000173093|HPRD:08765|Vega:OTTHUMG00000169534 12 12q24.11 coiled-coil domain containing 63 protein-coding CCDC63 coiled-coil domain containing 63 O coiled-coil domain-containing protein 63 20121230 -9606 160777 CCDC60 - - HGNC:28610|Ensembl:ENSG00000183273|HPRD:11347|Vega:OTTHUMG00000168943 12 12q24.23 coiled-coil domain containing 60 protein-coding CCDC60 coiled-coil domain containing 60 O coiled-coil domain-containing protein 60 20121230 -9606 160824 SP3P RP11-114G1.1 - HGNC:35430 13 13q31.3 Sp3 transcription factor pseudogene pseudo SP3P Sp3 transcription factor pseudogene O - 20121230 -9606 160851 DGKH RP11-215B13.1 DGKeta HGNC:2854|MIM:604071|Ensembl:ENSG00000102780|HPRD:07237|Vega:OTTHUMG00000016804 13 13q14.11 diacylglycerol kinase, eta protein-coding DGKH diacylglycerol kinase, eta O DAG kinase eta|DGK-eta|diacylglycerol kinase eta|diglyceride kinase eta 20121230 -9606 160857 CCDC122 RP11-5G9.1 - HGNC:26478|MIM:613408|Ensembl:ENSG00000151773|HPRD:13406|Vega:OTTHUMG00000017413 13 13q14.11 coiled-coil domain containing 122 protein-coding CCDC122 coiled-coil domain containing 122 O coiled-coil domain-containing protein 122 20121230 -9606 160897 GPR180 - ITR HGNC:28899|MIM:607787|Ensembl:ENSG00000152749|HPRD:16258|Vega:OTTHUMG00000017207 13 13q32.1 G protein-coupled receptor 180 protein-coding GPR180 G protein-coupled receptor 180 O integral membrane protein GPR180|intimal thickness-related receptor 20121230 -9606 161003 STOML3 RP11-50D16.1 Epb7.2l|SRO HGNC:19420|MIM:608327|Ensembl:ENSG00000133115|HPRD:16315|Vega:OTTHUMG00000016763 13 13q13.3 stomatin (EPB72)-like 3 protein-coding STOML3 stomatin (EPB72)-like 3 O SLP-3|erythrocyte band 7 integral membrane protein|protein 7.2B|stomatin-like protein 3 20121230 -9606 161142 FAM71D - C14orf54 HGNC:20101|Ensembl:ENSG00000172717|HPRD:12653|Vega:OTTHUMG00000142819 14 14q23.3 family with sequence similarity 71, member D protein-coding FAM71D family with sequence similarity 71, member D O protein FAM71D 20121230 -9606 161145 TMEM229B - C14orf83 HGNC:20130|Ensembl:ENSG00000198133|HPRD:08157|Vega:OTTHUMG00000171270 14 14q24.1 transmembrane protein 229B protein-coding TMEM229B transmembrane protein 229B O - 20121230 -9606 161159 ACTN1-AS1 - C14orf84 HGNC:20131 14 14q24.1 ACTN1 antisense RNA 1 miscRNA ACTN1-AS1 ACTN1 antisense RNA 1 O - 20121110 -9606 161176 SYNE3 - C14orf49|NET53|Nesp3 HGNC:19861|MIM:610861|Ensembl:ENSG00000176438|HPRD:12652|Vega:OTTHUMG00000171632 14 14q32.13 spectrin repeat containing, nuclear envelope family member 3 protein-coding SYNE3 spectrin repeat containing, nuclear envelope family member 3 O nesprin-3|nuclear envelope spectrin repeat protein 3 20121230 -9606 161198 CLEC14A UNQ236/PRO269 C14orf27|CEG1|EGFR-5 HGNC:19832|Ensembl:ENSG00000176435|HPRD:10711|Vega:OTTHUMG00000140248 14 14q21.1 C-type lectin domain family 14, member A protein-coding CLEC14A C-type lectin domain family 14, member A O C-type lectin domain family 14 member A|ClECT and EGF-like domain containing protein|epidermal growth factor receptor 5 20121230 -9606 161247 FITM1 - FIT1 HGNC:33714|MIM:612028|Ensembl:ENSG00000139914|HPRD:17312|Vega:OTTHUMG00000133476 14 14q12 fat storage-inducing transmembrane protein 1 protein-coding FITM1 fat storage-inducing transmembrane protein 1 O fat-inducing protein 1|fat-inducing transcript 1 20121230 -9606 161253 REM2 hCG_41987 - HGNC:20248|Ensembl:ENSG00000139890|HPRD:08248|Vega:OTTHUMG00000170277 14 14q11.2 RAS (RAD and GEM)-like GTP binding 2 protein-coding REM2 RAS (RAD and GEM)-like GTP binding 2 O GTP-binding protein REM 2|Rad and Gem-related 2 (rat homolog)|rad and Gem-like GTP-binding protein 2 20121230 -9606 161271 OR4H12P - C14orf14|OR4H12|c14_5009 HGNC:19433 14 14q11.2 olfactory receptor, family 4, subfamily H, member 12 pseudogene pseudo OR4H12P olfactory receptor, family 4, subfamily H, member 12 pseudogene O - 20121230 -9606 161291 TMEM30B - CDC50B HGNC:27254|MIM:611029|Ensembl:ENSG00000182107|HPRD:18567|Vega:OTTHUMG00000171426 14 14q23.1 transmembrane protein 30B protein-coding TMEM30B transmembrane protein 30B O cell cycle control protein 50B 20121230 -9606 161342 LINC00519 - C14orf30|c14_5317 HGNC:19838 14 14q21.3 long intergenic non-protein coding RNA 519 unknown LINC00519 long intergenic non-protein coding RNA 519 O - 20121021 -9606 161357 MDGA2 UNQ8188/PRO23197 MAMDC1|c14_5286 HGNC:19835|MIM:611128|Ensembl:ENSG00000139915|HPRD:14352|Vega:OTTHUMG00000029429 14 14q21.3 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 O MAM domain containing 1|MAM domain-containing glycosylphosphatidylinositol anchor protein 2 20121230 -9606 161394 SAMD15 - C14orf174|FAM15A HGNC:18631|Ensembl:ENSG00000100583|HPRD:16618|Vega:OTTHUMG00000167428 14 14q24.3 sterile alpha motif domain containing 15 protein-coding SAMD15 sterile alpha motif domain containing 15 O SAM domain-containing protein 15|SAM domain-containing protein C14orf174|family with sequence similarity 15, member A|sterile alpha motif domain-containing protein 15 20121230 -9606 161406 RPL7AP10 - RPL7AP3|RPL7AP68|RPL7A_31_1637|rpL7a HGNC:32433 19 19p12 ribosomal protein L7a pseudogene 10 pseudo RPL7AP10 ribosomal protein L7a pseudogene 10 O - 20121230 -9606 161424 NOP9 - C14orf21 HGNC:19826|Ensembl:ENSG00000196943|HPRD:12643|Vega:OTTHUMG00000029342 14 14q12 NOP9 nucleolar protein protein-coding NOP9 NOP9 nucleolar protein O NOP9 nucleolar protein homolog|nucleolar protein 9|pumilio domain-containing protein C14orf21 20121230 -9606 161436 EML5 - EMAP-2 HGNC:18197|Ensembl:ENSG00000165521|HPRD:16861|Vega:OTTHUMG00000170811 14 14q31.3 echinoderm microtubule associated protein like 5 protein-coding EML5 echinoderm microtubule associated protein like 5 O EMAP-5|echinoderm microtubule-associated protein-like 5 20121230 -9606 161497 STRC - DFNB16 HGNC:16035|MIM:606440|Ensembl:ENSG00000242866|HPRD:08403|Vega:OTTHUMG00000059899 15 15q15.3 stereocilin protein-coding STRC stereocilin O - 20121230 -9606 161502 C15orf26 - - HGNC:26782|Ensembl:ENSG00000156206|HPRD:08243|Vega:OTTHUMG00000172263 15 15q25.1 chromosome 15 open reading frame 26 protein-coding C15orf26 chromosome 15 open reading frame 26 O uncharacterized protein C15orf26 20121230 -9606 161514 TBC1D21 - MgcRabGAP HGNC:28536|Ensembl:ENSG00000167139|HPRD:15473|Vega:OTTHUMG00000137594 15 15q24.1 TBC1 domain family, member 21 protein-coding TBC1D21 TBC1 domain family, member 21 O TBC1 domain family member 21|male germ cell-specific expressed, containing a RabGAP domain 20121230 -9606 161582 DYX1C1 - DYX1|DYXC1|EKN1|RD HGNC:21493|MIM:608706|Ensembl:ENSG00000256061|HPRD:10568|Vega:OTTHUMG00000132008 15 15q21.3 dyslexia susceptibility 1 candidate 1 protein-coding DYX1C1 dyslexia susceptibility 1 candidate 1 O dyslexia susceptibility 1 candidate gene 1 protein 20121230 -9606 161635 CSNK1A1P1 - CSNK1A1P HGNC:30446 15 15q14 casein kinase 1, alpha 1 pseudogene 1 pseudo CSNK1A1P1 casein kinase 1, alpha 1 pseudogene 1 O - 20121230 -9606 161725 OTUD7A - C15orf16|C16ORF15|CEZANNE2|OTUD7 HGNC:20718|MIM:612024|Ensembl:ENSG00000169918|HPRD:12666|Vega:OTTHUMG00000129275 15 15q13.3 OTU domain containing 7A protein-coding OTUD7A OTU domain containing 7A O OTU domain-containing protein 7A|cezanne 2|zinc finger protein Cezanne 2 20121230 -9606 161742 SPRED1 - NFLS|hSpred1|spred-1 HGNC:20249|MIM:609291|Ensembl:ENSG00000166068|HPRD:11601|Vega:OTTHUMG00000172377 15 15q14 sprouty-related, EVH1 domain containing 1 protein-coding SPRED1 sprouty-related, EVH1 domain containing 1 O sprouty-related, EVH1 domain-containing protein 1|suppressor of Ras/MAPK activation 20121230 -9606 161753 ODF3L1 - - HGNC:28735|Ensembl:ENSG00000182950|HPRD:11360|Vega:OTTHUMG00000142837 15 15q24.2 outer dense fiber of sperm tails 3-like 1 protein-coding ODF3L1 outer dense fiber of sperm tails 3-like 1 O outer dense fiber protein 3-like protein 1 20121230 -9606 161779 PGBD4 - - HGNC:19401|Ensembl:ENSG00000182405|HPRD:17839|Vega:OTTHUMG00000129370 15 15q14 piggyBac transposable element derived 4 protein-coding PGBD4 piggyBac transposable element derived 4 O piggyBac transposable element-derived protein 4 20121230 -9606 161823 ADAL - - HGNC:31853|Ensembl:ENSG00000168803|HPRD:11779|Vega:OTTHUMG00000176646 15 15q15.3 adenosine deaminase-like protein-coding ADAL adenosine deaminase-like O adenosine deaminase-like protein 20121230 -9606 161829 EXD1 - EXDL1 HGNC:28507|Ensembl:ENSG00000178997|HPRD:14571|Vega:OTTHUMG00000130232 15 15q15.1 exonuclease 3'-5' domain containing 1 protein-coding EXD1 exonuclease 3'-5' domain containing 1 O exonuclease 3'-5' domain-containing protein 1|exonuclease 3'-5' domain-like 1|exonuclease 3'-5' domain-like-containing protein 1 20121230 -9606 161835 FSIP1 HSD10 - HGNC:21674|Ensembl:ENSG00000150667|HPRD:08201|Vega:OTTHUMG00000172456 15 15q14 fibrous sheath interacting protein 1 protein-coding FSIP1 fibrous sheath interacting protein 1 O fibrous sheath-interacting protein 1 20121230 -9606 161882 ZFPM1 - FOG|FOG1|ZNF408|ZNF89A HGNC:19762|MIM:601950|Ensembl:ENSG00000179588|HPRD:11800|Vega:OTTHUMG00000173152 16 16q24.2 zinc finger protein, FOG family member 1 protein-coding ZFPM1 zinc finger protein, FOG family member 1 O FOG-1|friend of GATA 1|friend of GATA protein 1|friend of GATA-1|zinc finger protein 89A|zinc finger protein ZFPM1|zinc finger protein, multitype 1 20121230 -9606 161931 ADAD2 - TENRL HGNC:30714|Ensembl:ENSG00000140955|HPRD:14107|Vega:OTTHUMG00000137637 16 16q24.1 adenosine deaminase domain containing 2 protein-coding ADAD2 adenosine deaminase domain containing 2 O adenosine deaminase domain-containing protein 2 20121230 -9606 162073 ITPRIPL2 - - HGNC:27257|Ensembl:ENSG00000205730|HPRD:18743|Vega:OTTHUMG00000177199 16 16p12.3 inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein-like 2 O inositol 1,4,5-triphosphate receptor interacting protein-like 2|inositol 1,4,5-triphosphate receptor-interacting protein-like 2|inositol 1,4,5-trisphosphate receptor-interacting protein-like 2 20121230 -9606 162083 C16orf82 - TNT HGNC:30755|HPRD:18211 16 16p12.1 chromosome 16 open reading frame 82 protein-coding C16orf82 chromosome 16 open reading frame 82 O protein TNT 20121230 -9606 162137 MGC34800 - - - 16 16p11.2 uncharacterized protein MGC34800 unknown - - - - 20121230 -9606 162239 ZFP1 - ZNF475 HGNC:23328|Ensembl:ENSG00000184517|HPRD:15724|Vega:OTTHUMG00000137602 16 16q23.1 ZFP1 zinc finger protein protein-coding ZFP1 ZFP1 zinc finger protein O zfp-1|zinc finger protein 1 homolog|zinc finger protein 475 20121230 -9606 162282 ANKFN1 - - HGNC:26766|Ensembl:ENSG00000153930|HPRD:08238|Vega:OTTHUMG00000155010 17 17q22 ankyrin-repeat and fibronectin type III domain containing 1 protein-coding ANKFN1 ankyrin-repeat and fibronectin type III domain containing 1 O ankyrin repeat and fibronectin type-III domain-containing protein 1 20121230 -9606 162333 MARCH10 - MARCH-X|RNF190 HGNC:26655|MIM:613337|Ensembl:ENSG00000173838|HPRD:08762|Vega:OTTHUMG00000179192 17 17q23.2 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase protein-coding MARCH10 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase O membrane-associated RING finger protein 10|membrane-associated RING-CH protein X|probable E3 ubiquitin-protein ligase MARCH10|ring finger protein 190 20121230 -9606 162387 MFSD6L FP7072 - HGNC:26656|Ensembl:ENSG00000185156|HPRD:08186|Vega:OTTHUMG00000178584 17 17p13.1 major facilitator superfamily domain containing 6-like protein-coding MFSD6L major facilitator superfamily domain containing 6-like O major facilitator superfamily domain-containing protein 6-like 20121230 -9606 162394 SLFN5 - - HGNC:28286|MIM:614952|Ensembl:ENSG00000166750|HPRD:17519|Vega:OTTHUMG00000179858 17 17q12 schlafen family member 5 protein-coding SLFN5 schlafen family member 5 O - 20121230 -9606 162417 NAGS - AGAS|ARGA HGNC:17996|MIM:608300|Ensembl:ENSG00000161653|HPRD:10510|Vega:OTTHUMG00000181802 17 17q21.31 N-acetylglutamate synthase protein-coding NAGS N-acetylglutamate synthase O N-acetylglutamate synthase, mitochondrial|amino-acid acetyltransferase 20121230 -9606 162427 FAM134C - - HGNC:27258|Ensembl:ENSG00000141699|HPRD:14108|Vega:OTTHUMG00000180275 17 17q21.2 family with sequence similarity 134, member C protein-coding FAM134C family with sequence similarity 134, member C O protein FAM134C 20121230 -9606 162461 TMEM92 UNQ5801/PRO19608 - HGNC:26579|Ensembl:ENSG00000167105|HPRD:08743|Vega:OTTHUMG00000162060 17 17q21.33 transmembrane protein 92 protein-coding TMEM92 transmembrane protein 92 O - 20121230 -9606 162466 PHOSPHO1 - - HGNC:16815|Ensembl:ENSG00000173868|HPRD:17847|Vega:OTTHUMG00000161305 17 17q21.32 phosphatase, orphan 1 protein-coding PHOSPHO1 phosphatase, orphan 1 O phosphoethanolamine/phosphocholine phosphatase 20121230 -9606 162494 RHBDL3 - RHBDL4|VRHO HGNC:16502|Ensembl:ENSG00000141314|HPRD:07501|Vega:OTTHUMG00000179568 17 17q11.2 rhomboid, veinlet-like 3 (Drosophila) protein-coding RHBDL3 rhomboid, veinlet-like 3 (Drosophila) O rhomboid, veinlet-like 4|rhomboid-related protein 3|ventrhoid transmembrane protein 20121230 -9606 162514 TRPV3 - OLMS|VRL3 HGNC:18084|MIM:607066|Ensembl:ENSG00000167723|HPRD:06141|Vega:OTTHUMG00000090695 17 17p13.2 transient receptor potential cation channel, subfamily V, member 3 protein-coding TRPV3 transient receptor potential cation channel, subfamily V, member 3 O VRL-3|transient receptor potential cation channel subfamily V member 3|vanilloid receptor-like 3|vanilloid receptor-related osmotically activated channel protein 20121230 -9606 162515 SLC16A11 - MCT11 HGNC:23093|Ensembl:ENSG00000174326|HPRD:11567|Vega:OTTHUMG00000102087 17 17p13.1 solute carrier family 16, member 11 (monocarboxylic acid transporter 11) protein-coding SLC16A11 solute carrier family 16, member 11 (monocarboxylic acid transporter 11) O MCT 11|monocarboxylate transporter 11|solute carrier family 16 (monocarboxylic acid transporters), member 11|solute carrier family 16 member 11 20121230 -9606 162517 FBXO39 - Fbx39 HGNC:28565|MIM:609106|Ensembl:ENSG00000177294|HPRD:16444|Vega:OTTHUMG00000102062 17 17p13.1 F-box protein 39 protein-coding FBXO39 F-box protein 39 O F-box only protein 39 20121230 -9606 162540 SPPL2C - IMP5 HGNC:28902|MIM:608284|Ensembl:ENSG00000185294|HPRD:07085|Vega:OTTHUMG00000178247 17 17q21.31 signal peptide peptidase like 2C protein-coding SPPL2C signal peptide peptidase like 2C O IMP-5|SPP-like 2C|intramembrane protease 5|signal peptide peptidase-like 2C 20121230 -9606 162605 KRT28 - KRT25D HGNC:30842|Ensembl:ENSG00000173908|HPRD:17245|Vega:OTTHUMG00000133365 17 17q21.2 keratin 28 protein-coding KRT28 keratin 28 O CK-28|K25D|K28|cytokeratin-28|keratin 25D|keratin, type I cytoskeletal 28|keratin-25D|keratin-28|type I inner root sheath specific keratin 25 irs4|type I inner root sheath-specific keratin-K25irs4 20121230 -9606 162632 USP32P1 - - HGNC:43570 17 17p11.2 ubiquitin specific peptidase 32 pseudogene 1 pseudo USP32P1 ubiquitin specific peptidase 32 pseudogene 1 O - 20121230 -9606 162655 ZNF519 - HsT2362 HGNC:30574|Ensembl:ENSG00000175322|HPRD:15816|Vega:OTTHUMG00000182055 18 18p11.21 zinc finger protein 519 protein-coding ZNF519 zinc finger protein 519 O - 20121230 -9606 162681 C18orf54 - LAS2 HGNC:13796|MIM:613258|Ensembl:ENSG00000166845|HPRD:11334|Vega:OTTHUMG00000132703 18 18q21.2 chromosome 18 open reading frame 54 protein-coding C18orf54 chromosome 18 open reading frame 54 O hypothetical protein V1|hypothetical protein V3|hypothetical protein V4|hypothetical protein V5|lung adenoma susceptibility protein 2 20121230 -9606 162699 TCEB3C - HsT829|TCEB3L2 HGNC:24617|Ensembl:ENSG00000183791|HPRD:15479|Vega:OTTHUMG00000132651 18 18q21.1 transcription elongation factor B polypeptide 3C (elongin A3) protein-coding TCEB3C transcription elongation factor B polypeptide 3C (elongin A3) O RNA polymerase II transcription factor SIII subunit A3|eloA3|elongin-A3 20121230 -9606 162962 ZNF836 - - HGNC:34333|Ensembl:ENSG00000196267 19 19q13.41 zinc finger protein 836 protein-coding ZNF836 zinc finger protein 836 O - 20121230 -9606 162963 ZNF610 - - HGNC:26687|Ensembl:ENSG00000167554|HPRD:11735 19 19q13.41 zinc finger protein 610 protein-coding ZNF610 zinc finger protein 610 O zink finger protein 20121230 -9606 162966 ZNF600 - KR-ZNF1 HGNC:30951|Ensembl:ENSG00000189190|HPRD:11733 19 19q13.41 zinc finger protein 600 protein-coding ZNF600 zinc finger protein 600 O zinc finger protein KR-ZNF1 20121230 -9606 162967 ZNF320 - ZFPL HGNC:13842|MIM:606427|Ensembl:ENSG00000182986|HPRD:18506 19 19q13.41 zinc finger protein 320 protein-coding ZNF320 zinc finger protein 320 O zinc finger gene 320|zinc finger protein like 20121230 -9606 162968 ZNF497 - - HGNC:23714|Ensembl:ENSG00000174586|HPRD:15806 19 19q13.43 zinc finger protein 497 protein-coding ZNF497 zinc finger protein 497 O zinc finger-like protein 20121230 -9606 162972 ZNF550 - - HGNC:28643|Ensembl:ENSG00000251369|HPRD:15834 19 19q13.43 zinc finger protein 550 protein-coding ZNF550 zinc finger protein 550 O - 20121230 -9606 162979 ZNF296 - ZFP296|ZNF342 HGNC:15981|MIM:613226|Ensembl:ENSG00000170684|HPRD:15782|Vega:OTTHUMG00000181766 19 19q13.32 zinc finger protein 296 protein-coding ZNF296 zinc finger protein 296 O zinc finger protein 342 20121230 -9606 162989 DEDD2 PSEC0004 FLAME-3 HGNC:24450|Ensembl:ENSG00000160570|HPRD:10868 19 19q13.2 death effector domain containing 2 protein-coding DEDD2 death effector domain containing 2 O DED-containing protein FLAME-3|DNA-binding death effector domain-containing protein 2|FADD-like anti-apoptotic molecule 3 20121230 -9606 162993 ZNF846 - - HGNC:27260|Ensembl:ENSG00000196605|Vega:OTTHUMG00000180208 19 19p13.2 zinc finger protein 846 protein-coding ZNF846 zinc finger protein 846 O - 20121230 -9606 162998 OR7D2 - HTPCRH03|OR19-10|OR19-4 HGNC:8378|Ensembl:ENSG00000188000|HPRD:17784|Vega:OTTHUMG00000179934 19 19p13.2 olfactory receptor, family 7, subfamily D, member 2 protein-coding OR7D2 olfactory receptor, family 7, subfamily D, member 2 O olfactory receptor 19-4|olfactory receptor 7D2|olfactory receptor OR19-10 20121230 -9606 163007 CYP2T3P - - HGNC:18853 19 19q13.2 cytochrome P450, family 2, subfamily T, polypeptide 3 pseudogene pseudo CYP2T3P cytochrome P450, family 2, subfamily T, polypeptide 3 pseudogene O - 20121230 -9606 163033 ZNF579 - - HGNC:26646|Ensembl:ENSG00000218891|HPRD:11730|Vega:OTTHUMG00000180857 19 19q13.42 zinc finger protein 579 protein-coding ZNF579 zinc finger protein 579 O - 20121230 -9606 163049 ZNF791 - - HGNC:26895|Ensembl:ENSG00000173875|HPRD:08295|Vega:OTTHUMG00000156426 19 19p13.2 zinc finger protein 791 protein-coding ZNF791 zinc finger protein 791 O - 20121230 -9606 163050 ZNF564 - - HGNC:31106|Ensembl:ENSG00000249709|HPRD:10338|Vega:OTTHUMG00000156418 19 19p13.2 zinc finger protein 564 protein-coding ZNF564 zinc finger protein 564 O - 20121230 -9606 163051 ZNF709 - - HGNC:20629|Ensembl:ENSG00000196826|Ensembl:ENSG00000242852|HPRD:08236|Vega:OTTHUMG00000156406|Vega:OTTHUMG00000162246 19 19p13.2 zinc finger protein 709 protein-coding ZNF709 zinc finger protein 709 O - 20121230 -9606 163059 ZNF433 - - HGNC:20811|Ensembl:ENSG00000197647|HPRD:15790|Vega:OTTHUMG00000156427 19 19p13.2 zinc finger protein 433 protein-coding ZNF433 zinc finger protein 433 O - 20121230 -9606 163071 ZNF114 - - HGNC:12894|MIM:603996|Ensembl:ENSG00000178150|HPRD:14463 19 19q13.33 zinc finger protein 114 protein-coding ZNF114 zinc finger protein 114 O zinc finger protein 114 (Y18) 20121230 -9606 163081 ZNF567 - - HGNC:28696|Ensembl:ENSG00000189042|HPRD:11728|Vega:OTTHUMG00000180898 19 19q13.12 zinc finger protein 567 protein-coding ZNF567 zinc finger protein 567 O - 20121230 -9606 163087 ZNF383 HSD17 - HGNC:18609|Ensembl:ENSG00000188283|HPRD:15786|Vega:OTTHUMG00000181890 19 19q13.12 zinc finger protein 383 protein-coding ZNF383 zinc finger protein 383 O - 20121230 -9606 163088 TAF9P3 - TAF2GL HGNC:30678 19 19q12 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3 pseudo TAF9P3 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3 O - 20121230 -9606 163115 ZNF781 - - HGNC:26745|Ensembl:ENSG00000196381|HPRD:08225|Vega:OTTHUMG00000182106 19 19q13.12 zinc finger protein 781 protein-coding ZNF781 zinc finger protein 781 O - 20121230 -9606 163126 EID2 - CRI2|EID-2 HGNC:28292|MIM:609773|Ensembl:ENSG00000176396|HPRD:16754|Vega:OTTHUMG00000074073 19 19q13.2 EP300 interacting inhibitor of differentiation 2 protein-coding EID2 EP300 interacting inhibitor of differentiation 2 O CREBBP/EP300 inhibitor 2|CREBBP/EP300 inhibitory protein 2|E1A like inhibitor of differentiation 2|EID-1-like inhibitor of differentiation 2|EP300-interacting inhibitor of differentiation 2 20121230 -9606 163131 ZNF780B - ZNF779 HGNC:33109|Ensembl:ENSG00000128000|HPRD:11243|Vega:OTTHUMG00000155118 19 19q13.2 zinc finger protein 780B protein-coding ZNF780B zinc finger protein 780B O zinc finger protein 779 20121230 -9606 163154 PRR22 - - HGNC:28354|Ensembl:ENSG00000212123|HPRD:14501|Vega:OTTHUMG00000180553 19 19p13.3 proline rich 22 protein-coding PRR22 proline rich 22 O proline-rich protein 22 20121230 -9606 163175 LGI4 UNQ6515/PRO21485 LGIL3 HGNC:18712|MIM:608303|Ensembl:ENSG00000153902|HPRD:06433|Vega:OTTHUMG00000044558 19 19q13.12|19q13.11 leucine-rich repeat LGI family, member 4 protein-coding LGI4 leucine-rich repeat LGI family, member 4 O LGI1-like protein 3|leucine-rich glioma-inactivated gene 4|leucine-rich glioma-inactivated protein 4|leucine-rich repeat LGI family member 4 20121230 -9606 163183 SYNE4 - C19orf46|Nesp4 HGNC:26703|Ensembl:ENSG00000181392|HPRD:08776|Vega:OTTHUMG00000048135 19 19q13.12 spectrin repeat containing, nuclear envelope family member 4 protein-coding SYNE4 spectrin repeat containing, nuclear envelope family member 4 O nesprin-4|nuclear envelope spectrin repeat protein 4 20121230 -9606 163223 ZNF676 - - HGNC:20429|Ensembl:ENSG00000196109|HPRD:17313 19 19p12 zinc finger protein 676 protein-coding ZNF676 zinc finger protein 676 O - 20121230 -9606 163227 ZNF100 - - HGNC:12880|MIM:603982|Ensembl:ENSG00000197020|HPRD:10359 19 19p12 zinc finger protein 100 protein-coding ZNF100 zinc finger protein 100 O zinc finger protein 100 (Y1) 20121230 -9606 163255 ZNF540 - Nbla10512 HGNC:25331|MIM:613903|Ensembl:ENSG00000171817|HPRD:15827|Vega:OTTHUMG00000182053 19 19q13.12 zinc finger protein 540 protein-coding ZNF540 zinc finger protein 540 O putative protein product of Nbla10512 20121230 -9606 163259 DENND2C RP5-1156J9.1 dJ1156J9.1 HGNC:24748|Ensembl:ENSG00000175984|HPRD:13425|Vega:OTTHUMG00000011893 1 1p13.2 DENN/MADD domain containing 2C protein-coding DENND2C DENN/MADD domain containing 2C O DENN domain-containing protein 2C 20121230 -9606 163351 GBP6 - - HGNC:25395|MIM:612467|Ensembl:ENSG00000183347|HPRD:13572|Vega:OTTHUMG00000010123 1 1p22.2 guanylate binding protein family, member 6 protein-coding GBP6 guanylate binding protein family, member 6 O GBP-6|GTP-binding protein 6|guanine nucleotide-binding protein 6|guanylate-binding protein 6 20121230 -9606 163404 LPPR5 - PAP2|PAP2D|PRG5 Ensembl:ENSG00000117598|HPRD:12966|Vega:OTTHUMG00000010738 1 1p21.3 lipid phosphate phosphatase-related protein type 5 protein-coding - - - PRG-5|phosphatidic acid phosphatase 2d|phosphatidic acid phosphatase type 2|plasticity-related gene 5 protein|plasticity-related protein 5 20121230 -9606 163479 FNDC7 - RP11-293A10.2 HGNC:26668|Ensembl:ENSG00000143107|HPRD:08195|Vega:OTTHUMG00000011120 1 1p13.3 fibronectin type III domain containing 7 protein-coding FNDC7 fibronectin type III domain containing 7 O fibronectin type III domain-containing protein 7 20121230 -9606 163486 DENND1B RP11-53I24.2 C1ORF18|C1orf218|FAM31B HGNC:28404|MIM:613292|Ensembl:ENSG00000213047|HPRD:13303|Vega:OTTHUMG00000035653 1 1q31.3 DENN/MADD domain containing 1B protein-coding DENND1B DENN/MADD domain containing 1B O DENN domain-containing protein 1B|connecdenn 2|family with sequence similarity 31, member B 20121230 -9606 163589 TDRD5 - RP11-427G13.1|TUDOR3 HGNC:20614|Ensembl:ENSG00000162782|HPRD:15483|Vega:OTTHUMG00000035259 1 1q25.2 tudor domain containing 5 protein-coding TDRD5 tudor domain containing 5 O tudor domain-containing protein 5 20121230 -9606 163590 TOR1AIP2 - IFRG15|LULL1|NET9|RP11-12M5.5 HGNC:24055|MIM:614513|Ensembl:ENSG00000169905|HPRD:10048|Vega:OTTHUMG00000035265 1 1q25.2 torsin A interacting protein 2 protein-coding TOR1AIP2 torsin A interacting protein 2 O interferon responsive gene 15|lumenal domain like LAP1|lumenal domain-like LAP1|torsin-1A-interacting protein 2 20121230 -9606 163688 CALML6 RP1-140A9.2 CAGLP HGNC:24193|MIM:610171|Ensembl:ENSG00000169885|HPRD:12997|Vega:OTTHUMG00000000943 1 1p36.33 calmodulin-like 6 protein-coding CALML6 calmodulin-like 6 O EF-hand protein|calglandulin-like protein|calmodulin-like protein 6 20121230 -9606 163702 IFNLR1 RP11-10N16.1 CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2 HGNC:18584|MIM:607404|Ensembl:ENSG00000185436|HPRD:09589|Vega:OTTHUMG00000003036 1 1p36.11 interferon, lambda receptor 1 protein-coding IFNLR1 interferon, lambda receptor 1 O CRF2-12|IFN-lambda receptor 1|IFN-lambda-R1|IL-28 receptor subunit alpha|IL-28R-alpha|IL-28RA|class II cytokine receptor CRF2/12|cytokine receptor class-II member 12|cytokine receptor family 2 member 12|interferon lambda receptor 1|interferon lambda, receptor 1|interleukin 28 alpha receptor|interleukin 28 receptor A|interleukin 28 receptor, alpha (interferon, lambda receptor)|interleukin or cytokine receptor 2|interleukin-28 receptor subunit alpha|likely interleukin or cytokine receptor 2 20121230 -9606 163720 CYP4Z2P - - HGNC:24426 1 1p33 cytochrome P450, family 4, subfamily Z, polypeptide 2 pseudogene pseudo CYP4Z2P cytochrome P450, family 4, subfamily Z, polypeptide 2 pseudogene O - 20121230 -9606 163732 CITED4 - - HGNC:18696|MIM:606815|Ensembl:ENSG00000179862|HPRD:06011|Vega:OTTHUMG00000007728 1 1p34.2|1p35-p34 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein-coding CITED4 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 O MRG-2|MSG1-related protein 2|cbp/p300-interacting transactivator 4|transcriptional co-activator 4 20121230 -9606 163742 SLC25A3P1 - - HGNC:26869 1 1p32.3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 pseudo SLC25A3P1 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 O - 20121230 -9606 163747 C1orf177 - - HGNC:26854|Ensembl:ENSG00000162398|HPRD:08807|Vega:OTTHUMG00000009986 1 1p32.3 chromosome 1 open reading frame 177 protein-coding C1orf177 chromosome 1 open reading frame 177 O uncharacterized protein C1orf177 20121230 -9606 163778 SPRR4 - - HGNC:23173|Ensembl:ENSG00000184148|HPRD:18101|Vega:OTTHUMG00000012450 1 1q21.3 small proline-rich protein 4 protein-coding SPRR4 small proline-rich protein 4 O small proline rich protein 4 20121230 -9606 163782 KANK4 - ANKRD38|RP5-1155K23.5|dJ1078M7.1 HGNC:27263|MIM:614612|Ensembl:ENSG00000132854|HPRD:14109|Vega:OTTHUMG00000008971 1 1p31.3 KN motif and ankyrin repeat domains 4 protein-coding KANK4 KN motif and ankyrin repeat domains 4 O KN motif and ankyrin repeat domain-containing protein 4|ankyrin repeat domain 38|ankyrin repeat domain-containing protein 38|kidney ankyrin repeat-containing protein 4 20121230 -9606 163786 SASS6 - SAS-6|SAS6 HGNC:25403|MIM:609321|Ensembl:ENSG00000156876|HPRD:10907|Vega:OTTHUMG00000010754 1 1p21.2 spindle assembly 6 homolog (C. elegans) protein-coding SASS6 spindle assembly 6 homolog (C. elegans) O hsSAS-6|spindle assembly abnormal protein 6 homolog 20121230 -9606 163859 SDE2 - C1orf55|RP4-671D7.1|dJ671D7.1 HGNC:26643|Ensembl:ENSG00000143751|HPRD:08180|Vega:OTTHUMG00000037504 1 1q42.12 SDE2 telomere maintenance homolog (S. pombe) protein-coding SDE2 SDE2 telomere maintenance homolog (S. pombe) O UPF0667 protein C1orf55|protein SDE2 homolog 20121230 -9606 163882 CNST RP11-452J6.1 C1orf71|PPP1R64 HGNC:26486|MIM:613439|Ensembl:ENSG00000162852|HPRD:08718|Vega:OTTHUMG00000040090 1 1q44 consortin, connexin sorting protein protein-coding CNST consortin, connexin sorting protein O consortin|protein phosphatase 1, regulatory subunit 64 20121230 -9606 163933 FAM43B - - HGNC:31791|Ensembl:ENSG00000183114|HPRD:16881|Vega:OTTHUMG00000057491 1 1p36.12 family with sequence similarity 43, member B protein-coding FAM43B family with sequence similarity 43, member B O protein FAM43B 20121230 -9606 164022 PPIAL4A - COAS2|PPIAL4 HGNC:24369|Ensembl:ENSG00000255963|HPRD:09781|Vega:OTTHUMG00000013920 1 1q21.2 peptidylprolyl isomerase A (cyclophilin A)-like 4A protein-coding PPIAL4A peptidylprolyl isomerase A (cyclophilin A)-like 4A O COAS-2|PPIase A-like 4A|PPIase A-like 4B|PPIase A-like 4G|chromosome 1 amplified sequence 2|chromosome 1-amplified sequence 2|cyclophilin homolog overexpressed in liver cancer|cyclophilin-LC (COAS2)|peptidyl-prolyl cis-trans isomerase A-like 4A/B/C|peptidylprolyl cis-trans isomerase A-like 4|peptidylprolyl cis-trans isomerase A-like 4A|peptidylprolyl cis-trans isomerase A-like 4B|peptidylprolyl isomerase A (cyclophilin A)-like 4|peptidylprolyl isomerase A-like 4A 20121230 -9606 164045 HFM1 RP11-509K22.1 MER3|RP11-539G11.1|SEC63D1|Si-11|Si-11-6|helicase HGNC:20193|Ensembl:ENSG00000162669|HPRD:13423|HPRD:18568|Vega:OTTHUMG00000010093 1 1p22.2 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) protein-coding HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) O SEC63 domain containing 1|SEC63 domain-containing protein 1|helicase-like protein HFM1|probable ATP-dependent DNA helicase HFM1 20121230 -9606 164091 PAQR7 RP1-125I3.1 MPRA|PGLP|mSR HGNC:23146|MIM:607779|Ensembl:ENSG00000182749|HPRD:09692|Vega:OTTHUMG00000007373 1 1p36.11 progestin and adipoQ receptor family member VII protein-coding PAQR7 progestin and adipoQ receptor family member VII O 2310021M12Rik|mPR alpha|membrane progestin receptor alpha|progestin and adipoQ receptor family member 7 20121230 -9606 164118 TTC24 RP11-284F21.2 - HGNC:32348|Ensembl:ENSG00000187862|Vega:OTTHUMG00000033202 1 1q23.1 tetratricopeptide repeat domain 24 protein-coding TTC24 tetratricopeptide repeat domain 24 O TPR repeat protein 24|tetratricopeptide repeat protein 24 20121230 -9606 164127 C1orf65 - RP11-76K24.1 HGNC:26654|Ensembl:ENSG00000178395|HPRD:08761|Vega:OTTHUMG00000037987 1 1q41 chromosome 1 open reading frame 65 protein-coding C1orf65 chromosome 1 open reading frame 65 O uncharacterized protein C1orf65 20121230 -9606 164153 UBL4B - - HGNC:32309|MIM:611127|Ensembl:ENSG00000186150|HPRD:17314|Vega:OTTHUMG00000166989 1 1p13.3 ubiquitin-like 4B protein-coding UBL4B ubiquitin-like 4B O ubiquitin-like protein 4B 20121230 -9606 164237 WFDC13 - C20orf138|WAP13|dJ601O1.3 HGNC:16131|Ensembl:ENSG00000168634|HPRD:15675|Vega:OTTHUMG00000046333 20 20q13.12 WAP four-disulfide core domain 13 protein-coding WFDC13 WAP four-disulfide core domain 13 O WAP four-disulfide core domain protein 13|protease inhibitor WAP13|protein WFDC13 20121230 -9606 164284 APCDD1L RP4-685L9.2 - HGNC:26892|Ensembl:ENSG00000198768|HPRD:08294|Vega:OTTHUMG00000032845 20 20q13.32 adenomatosis polyposis coli down-regulated 1-like protein-coding APCDD1L adenomatosis polyposis coli down-regulated 1-like O adenomatosis polyposis coli down-regulated 1 protein-like|protein APCDD1-like 20121230 -9606 164312 LRRN4 RP5-967N21.9 C20orf75|NLRR-4|NLRR4|dJ1056H1.1 HGNC:16208|Ensembl:ENSG00000125872|HPRD:12784|Vega:OTTHUMG00000031825 20 20p12.3 leucine rich repeat neuronal 4 protein-coding LRRN4 leucine rich repeat neuronal 4 O leucine-rich repeat neuronal protein 4|neuronal leucine-rich repeat protein 4 20121230 -9606 164380 CST13P RP11-218C14.6 CSTT|CTES6 HGNC:44335 20 20p11.21 cystatin 13, pseudogene pseudo CST13P cystatin 13, pseudogene O - 20121230 -9606 164395 TTLL9 RP1-310O13.10-004 C20orf125|dJ310O13.1 HGNC:16118|Ensembl:ENSG00000131044|HPRD:16638 20 20q11.21 tubulin tyrosine ligase-like family, member 9 protein-coding TTLL9 tubulin tyrosine ligase-like family, member 9 O probable tubulin polyglutamylase TTLL9|tubulin--tyrosine ligase-like protein 9 20121230 -9606 164592 CCDC116 - - HGNC:26688|Ensembl:ENSG00000161180|HPRD:08203|Vega:OTTHUMG00000150821 22 22q11.21 coiled-coil domain containing 116 protein-coding CCDC116 coiled-coil domain containing 116 O coiled-coil domain-containing protein 116 20121230 -9606 164633 CABP7 - CALN2 HGNC:20834|Ensembl:ENSG00000100314|HPRD:12995|Vega:OTTHUMG00000151282 22 22q12.2 calcium binding protein 7 protein-coding CABP7 calcium binding protein 7 O calcium-binding protein 7|calneuron 2|calneuron II|calneuron-2 20121230 -9606 164656 TMPRSS6 RP5-1170K4.5 IRIDA HGNC:16517|MIM:609862|Ensembl:ENSG00000187045|HPRD:10270|Vega:OTTHUMG00000150541 22 22q12.3 transmembrane protease, serine 6 protein-coding TMPRSS6 transmembrane protease, serine 6 O matriptase-2|membrane-bound mosaic serine proteinase matriptase-2|transmembrane protease serine 6|type II transmembrane serine protease 6 20121230 -9606 164668 APOBEC3H RP4-742C19.10-002 ARP10 HGNC:24100|MIM:610976|Ensembl:ENSG00000100298|HPRD:16508|Vega:OTTHUMG00000151082 22 22q13.1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H protein-coding APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H O APOBEC-related protein 10|ARP-10|DNA dC->dU-editing enzyme APOBEC-3H|apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3H 20121230 -9606 164684 WBP2NL CTA-250D10.11-006 PAWP HGNC:28389|MIM:610981|Ensembl:ENSG00000183066|HPRD:14512|Vega:OTTHUMG00000151270 22 22q13.2 WBP2 N-terminal like protein-coding WBP2NL WBP2 N-terminal like O WW domain-binding protein 2-like|postacrosomal sheath WW domain-binding protein 20121230 -9606 164714 TTLL8 RP3-355C18.2 - HGNC:34000|Ensembl:ENSG00000138892|Vega:OTTHUMG00000150241 22 22q13.33 tubulin tyrosine ligase-like family, member 8 protein-coding TTLL8 tubulin tyrosine ligase-like family, member 8 O protein monoglycylase TTLL8|tubulin--tyrosine ligase-like protein 8 20121230 -9606 164781 WDR69 - ODA16 HGNC:26383|Ensembl:ENSG00000123977|HPRD:08079|Vega:OTTHUMG00000133190 2 2q36.3 WD repeat domain 69 protein-coding WDR69 WD repeat domain 69 O WD repeat-containing protein 69|outer row dynein assembly 16 homolog|outer row dynein assembly protein 16 homolog 20121230 -9606 164832 LONRF2 - RNF192 HGNC:24788|Ensembl:ENSG00000170500|HPRD:13503|Vega:OTTHUMG00000130668 2 2q11.2 LON peptidase N-terminal domain and ring finger 2 protein-coding LONRF2 LON peptidase N-terminal domain and ring finger 2 O LON peptidase N-terminal domain and RING finger protein 2|RING finger protein 192|neuroblastoma apoptosis-related protease 20121230 -9606 164837 CYCSP7 - HCP7 HGNC:24422 2 2q11.2 cytochrome c, somatic pseudogene 7 pseudo CYCSP7 cytochrome c, somatic pseudogene 7 O - 20121230 -9606 165055 CCDC138 - - HGNC:26531|Ensembl:ENSG00000163006|HPRD:08136|Vega:OTTHUMG00000130980 2 2q12.3 coiled-coil domain containing 138 protein-coding CCDC138 coiled-coil domain containing 138 O coiled-coil domain-containing protein 138 20121230 -9606 165057 FLJ39061 - - - 2 2q33.1 uncharacterized protein FLJ39061 unknown - - - - 20120726 -9606 165082 GPR113 UNQ9196 PGR23|hGPCR37 HGNC:18989|Ensembl:ENSG00000173567|HPRD:11009|Vega:OTTHUMG00000150225 2 2p23.3 G protein-coupled receptor 113 protein-coding GPR113 G protein-coupled receptor 113 O G protein-coupled receptor PGR23|G-protein coupled receptor 113|G-protein coupled receptor PGR23|probable G-protein coupled receptor 113|seven transmembrane helix receptor 20121230 -9606 165100 C2orf57 - - HGNC:28563|Ensembl:ENSG00000177673|HPRD:14602|Vega:OTTHUMG00000133226 2 2q37.1 chromosome 2 open reading frame 57 protein-coding C2orf57 chromosome 2 open reading frame 57 O uncharacterized protein C2orf57 20121230 -9606 165140 OXER1 - GPCR|GPR170|TG1019 HGNC:24884|Ensembl:ENSG00000162881|HPRD:17812|Vega:OTTHUMG00000128643 2 2p21 oxoeicosanoid (OXE) receptor 1 protein-coding OXER1 oxoeicosanoid (OXE) receptor 1 O 5-oxo-ETE G-protein coupled receptor|5-oxo-ETE acid G-protein-coupled receptor 1|G-protein coupled receptor 170|G-protein coupled receptor R527|G-protein coupled receptor TG1019|oxoeicosanoid receptor 1 20121230 -9606 165186 FAM179A - - HGNC:33715|Ensembl:ENSG00000189350|HPRD:14110|Vega:OTTHUMG00000128432 2 2p23.2 family with sequence similarity 179, member A protein-coding FAM179A family with sequence similarity 179, member A O protein FAM179A 20121230 -9606 165215 FAM171B NPD019 KIAA1946 HGNC:29412|Ensembl:ENSG00000144369|HPRD:13907|Vega:OTTHUMG00000154278 2 2q32.1 family with sequence similarity 171, member B protein-coding FAM171B family with sequence similarity 171, member B O protein FAM171B 20121230 -9606 165257 C1QL2 - C1QTNF10|CTRP10 HGNC:24181|MIM:614330|Ensembl:ENSG00000144119|HPRD:12713|Vega:OTTHUMG00000153271 2 2q14.2 complement component 1, q subcomponent-like 2 protein-coding C1QL2 complement component 1, q subcomponent-like 2 O C1q and tumor necrosis factor related protein 10|C1q-domain containing protein|complement C1q-like protein 2 20121230 -9606 165324 UBXN2A - UBXD4 HGNC:27265|Ensembl:ENSG00000173960|HPRD:10292|Vega:OTTHUMG00000125497 2 2p23.3 UBX domain protein 2A protein-coding UBXN2A UBX domain protein 2A O UBX domain containing 4|UBX domain-containing protein 2A|UBX domain-containing protein 4 20121230 -9606 165530 CLEC4F - CLECSF13|KCLR HGNC:25357|Ensembl:ENSG00000152672|HPRD:13073|Vega:OTTHUMG00000129713 2 2p13.3 C-type lectin domain family 4, member F protein-coding CLEC4F C-type lectin domain family 4, member F O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13|C-type lectin 13|C-type lectin domain family 4 member F|C-type lectin superfamily member 13 20121230 -9606 165545 DQX1 - - HGNC:20410|Ensembl:ENSG00000144045|HPRD:13249|Vega:OTTHUMG00000129965 2 2p13.1 DEAQ box RNA-dependent ATPase 1 protein-coding DQX1 DEAQ box RNA-dependent ATPase 1 O ATP-dependent RNA helicase DQX1|DEAQ RNA-dependent ATPase DQX1|DEAQ box polypeptide 1 (RNA-dependent ATPase) 20121230 -9606 165631 PARP15 - ARTD7|BAL3|pART7 HGNC:26876|MIM:612066|Ensembl:ENSG00000173200|HPRD:08811|Vega:OTTHUMG00000159523 3 3q21.1 poly (ADP-ribose) polymerase family, member 15 protein-coding PARP15 poly (ADP-ribose) polymerase family, member 15 O ADP-ribosyltransferase diphtheria toxin-like 7|B-aggressive lymphoma 3|B-aggressive lymphoma protein 3|PARP-15|poly [ADP-ribose] polymerase 15 20121230 -9606 165679 SPTSSB - ADMP|C3orf57|SSSPTB HGNC:24045|MIM:610412|Ensembl:ENSG00000196542|HPRD:16476|Vega:OTTHUMG00000159073 3 3q26.1 serine palmitoyltransferase, small subunit B protein-coding SPTSSB serine palmitoyltransferase, small subunit B O androgen down regulated in mouse prostate|likely ortholog of androgen down regulated gene expressed in mouse prostate|serine palmitoyltransferase small subunit B|small subunit of serine palmitoyltransferase B 20121230 -9606 165721 DNAJB8 - DJ6 HGNC:23699|MIM:611337|Ensembl:ENSG00000179407|HPRD:06684|HPRD:09921|Vega:OTTHUMG00000159690 3 3q21.3 DnaJ (Hsp40) homolog, subfamily B, member 8 protein-coding DNAJB8 DnaJ (Hsp40) homolog, subfamily B, member 8 O dnaJ homolog subfamily B member 8 20121230 -9606 165829 GPR156 - GABABL|PGR28 HGNC:20844|MIM:610464|Ensembl:ENSG00000175697|HPRD:17067|Vega:OTTHUMG00000159406 3 3q13.33 G protein-coupled receptor 156 protein-coding GPR156 G protein-coupled receptor 156 O G protein-coupled receptor PGR28|G-protein coupled receptor PGR28|GABAB-related G-protein coupled receptor|probable G-protein coupled receptor 156 20121230 -9606 165904 XIRP1 - CMYA1|Xin HGNC:14301|MIM:609777|Ensembl:ENSG00000168334|HPRD:16727|Vega:OTTHUMG00000131297 3 3p22.2 xin actin-binding repeat containing 1 protein-coding XIRP1 xin actin-binding repeat containing 1 O cardiomyopathy associated 1|cardiomyopathy-associated protein 1|xin actin-binding repeat-containing protein 1 20121230 -9606 165918 RNF168 - hRNF168 HGNC:26661|MIM:612688|Ensembl:ENSG00000163961|HPRD:08190|Vega:OTTHUMG00000155582 3 3q29 ring finger protein 168, E3 ubiquitin protein ligase protein-coding RNF168 ring finger protein 168, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase RNF168 20121230 -9606 166012 CHST13 - C4ST3 HGNC:21755|MIM:610124|Ensembl:ENSG00000180767|HPRD:13057|Vega:OTTHUMG00000162721 3 3q21.3 carbohydrate (chondroitin 4) sulfotransferase 13 protein-coding CHST13 carbohydrate (chondroitin 4) sulfotransferase 13 O C4ST-3|carbohydrate sulfotransferase 13|chondroitin 4-O-sulfotransferase 3|chondroitin 4-sulfotransferase 3 20121230 -9606 166070 DDX50P2 - RH_II/GuBp2 HGNC:18975 3 3q25.2 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 2 pseudo DDX50P2 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 2 O - 20121230 -9606 166336 PRICKLE2 - EPM5 HGNC:20340|MIM:608501|Ensembl:ENSG00000163637|HPRD:16342|Vega:OTTHUMG00000158789 3 3p14.1 prickle homolog 2 (Drosophila) protein-coding PRICKLE2 prickle homolog 2 (Drosophila) O prickle-like protein 2 20121230 -9606 166348 KBTBD12 - KLHDC6 HGNC:25731|Ensembl:ENSG00000187715|HPRD:17001|Vega:OTTHUMG00000150508 3 3q21.3 kelch repeat and BTB (POZ) domain containing 12 protein-coding KBTBD12 kelch repeat and BTB (POZ) domain containing 12 O kelch domain containing 6|kelch domain-containing protein 6|kelch repeat and BTB domain-containing protein 12 20121230 -9606 166378 SPATA5 - AFG2|SPAF HGNC:18119|MIM:613940|Ensembl:ENSG00000145375|HPRD:11595|Vega:OTTHUMG00000133074 4 4q28.1 spermatogenesis associated 5 protein-coding SPATA5 spermatogenesis associated 5 O ATPase family gene 2 homolog|ATPase family protein 2 homolog|spermatogenesis associated factor SPAF|spermatogenesis-associated factor protein|spermatogenesis-associated protein 5 20121230 -9606 166379 BBS12 - C4orf24 HGNC:26648|MIM:610683|Ensembl:ENSG00000181004|HPRD:08759|Vega:OTTHUMG00000133070 4 4q27 Bardet-Biedl syndrome 12 protein-coding BBS12 Bardet-Biedl syndrome 12 O Bardet-Biedl syndrome 12 protein 20121230 -9606 166614 DCLK2 - CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 HGNC:19002|MIM:613166|Ensembl:ENSG00000170390|HPRD:13122|Vega:OTTHUMG00000161444 4 4q31.3 doublecortin-like kinase 2 protein-coding DCLK2 doublecortin-like kinase 2 O CaMK-like CREB regulatory kinase 2|doublecortin and CaM kinase-like 2|doublecortin domain-containing protein 3B|doublecortin-like and CAM kinase-like 2|serine/threonine-protein kinase DCLK2 20121230 -9606 166647 GPR125 UNQ556/PRO1113 PGR21|TEM5L HGNC:13839|MIM:612303|Ensembl:ENSG00000152990|HPRD:11011|Vega:OTTHUMG00000160926 4 4p15.2 G protein-coupled receptor 125 protein-coding GPR125 G protein-coupled receptor 125 O probable G-protein coupled receptor 125 20121230 -9606 166655 TRIM60 - RNF129|RNF33 HGNC:21162|Ensembl:ENSG00000176979|HPRD:11502|Vega:OTTHUMG00000161262 4 4q32.3 tripartite motif containing 60 protein-coding TRIM60 tripartite motif containing 60 O ring finger protein 129|ring finger protein 33|tripartite motif-containing 60|tripartite motif-containing protein 60 20121230 -9606 166752 FREM3 - - HGNC:25172|MIM:608946|Ensembl:ENSG00000183090|Vega:OTTHUMG00000161577 4 4q31.21 FRAS1 related extracellular matrix 3 protein-coding FREM3 FRAS1 related extracellular matrix 3 O FRAS1-related extracellular matrix protein 3 20121230 -9606 166785 MMAA - cblA HGNC:18871|MIM:607481|Ensembl:ENSG00000151611|HPRD:07394|Vega:OTTHUMG00000161369 4 4q31.21 methylmalonic aciduria (cobalamin deficiency) cblA type protein-coding MMAA methylmalonic aciduria (cobalamin deficiency) cblA type O methylmalonic aciduria type A protein, mitochondrial 20121230 -9606 166793 ZBTB49 - ZNF509 HGNC:19883|Ensembl:ENSG00000168826|HPRD:10335|Vega:OTTHUMG00000090325 4 4p16.3 zinc finger and BTB domain containing 49 protein-coding ZBTB49 zinc finger and BTB domain containing 49 O zinc finger and BTB domain-containing protein 49|zinc finger protein 509 20121230 -9606 166815 TIGD2 - - HGNC:18333|MIM:612973|Ensembl:ENSG00000180346|HPRD:18186|Vega:OTTHUMG00000130946 4 4q22.1 tigger transposable element derived 2 protein-coding TIGD2 tigger transposable element derived 2 O tigger transposable element-derived protein 2 20121230 -9606 166824 RASSF6 - - HGNC:20796|MIM:612620|Ensembl:ENSG00000169435|HPRD:15220|Vega:OTTHUMG00000130007 4 4q13.3 Ras association (RalGDS/AF-6) domain family member 6 protein-coding RASSF6 Ras association (RalGDS/AF-6) domain family member 6 O Ras association (RalGDS/AF-6) domain family 6|putative RAS binding protein|ras association domain-containing protein 6 20121230 -9606 166863 RBM46 - CT68 HGNC:28401|Ensembl:ENSG00000151962|HPRD:14517|Vega:OTTHUMG00000161543 4 4q32.1 RNA binding motif protein 46 protein-coding RBM46 RNA binding motif protein 46 O RNA-binding motif protein 46|cancer/testis antigen 68|probable RNA-binding protein 46 20121230 -9606 166929 SGMS2 - SMS2 HGNC:28395|MIM:611574|Ensembl:ENSG00000164023|HPRD:11323|Vega:OTTHUMG00000131811 4 4q25 sphingomyelin synthase 2 protein-coding SGMS2 sphingomyelin synthase 2 O SM synthase|phosphatidylcholine:ceramide cholinephosphotransferase 2 20121230 -9606 166968 MIER3 - - HGNC:26678|Ensembl:ENSG00000155545|HPRD:08199|Vega:OTTHUMG00000059589 5 5q11.2 mesoderm induction early response 1, family member 3 protein-coding MIER3 mesoderm induction early response 1, family member 3 O mesoderm induction early response protein 3|mi-er3 20121230 -9606 166979 CDC20B G6VTS76519 - HGNC:24222|Ensembl:ENSG00000164287|HPRD:13428|Vega:OTTHUMG00000131185 5 5q11.2 cell division cycle 20 homolog B (S. cerevisiae) protein-coding CDC20B cell division cycle 20 homolog B (S. cerevisiae) O CDC20 cell division cycle 20 homolog B|CDC20-like protein|cell division cycle protein 20 homolog B 20121230 -9606 166994 LOC166994 - - - 6 6p22.1 integral membrane glycoprotein-like unknown - - - - 20100404 -9606 167127 UGT3A2 PSEC0073 - HGNC:27266|Ensembl:ENSG00000168671|HPRD:14111|Vega:OTTHUMG00000131108 5 5p13.2 UDP glycosyltransferase 3 family, polypeptide A2 protein-coding UGT3A2 UDP glycosyltransferase 3 family, polypeptide A2 O UDP-glucuronosyltransferase 3A2|UDPGT 3A2 20121230 -9606 167153 PAPD4 - GLD2 HGNC:26776|MIM:614121|Ensembl:ENSG00000164329|HPRD:15098|Vega:OTTHUMG00000108163 5 5q14.1 PAP associated domain containing 4 protein-coding PAPD4 PAP associated domain containing 4 O PAP-associated domain-containing protein 4|TUTase 2|hGLD-2|poly(A) RNA polymerase GLD2|terminal uridylyltransferase 2 20121230 -9606 167227 DCP2 - NUDT20 HGNC:24452|MIM:609844|Ensembl:ENSG00000172795|HPRD:13125|Vega:OTTHUMG00000162853 5 5q22.2 DCP2 decapping enzyme homolog (S. cerevisiae) protein-coding DCP2 DCP2 decapping enzyme homolog (S. cerevisiae) O hDpc|m7GpppN-mRNA hydrolase|mRNA-decapping enzyme 2|nudix (nucleoside diphosphate linked moiety X)-type motif 20 20121230 -9606 167359 NIM1 - - Ensembl:ENSG00000177453|HPRD:14618|Vega:OTTHUMG00000131147 5 5p12 serine/threonine-protein kinase NIM1 protein-coding - - - - 20121230 -9606 167410 LIX1 - C5orf11 HGNC:18581|MIM:610466|Ensembl:ENSG00000145721|HPRD:08069|Vega:OTTHUMG00000128720 5 5q15 Lix1 homolog (chicken) protein-coding LIX1 Lix1 homolog (chicken) O limb expression 1|protein limb expression 1 homolog 20121230 -9606 167465 ZNF366 - DCSCRIPT HGNC:18316|MIM:610159|Ensembl:ENSG00000178175|HPRD:18329|Vega:OTTHUMG00000100965 5 5q13.2|5q13.2 zinc finger protein 366 protein-coding ZNF366 zinc finger protein 366 O - 20121230 -9606 167555 FAM151B UNQ9217/PRO28685 UNQ9217 HGNC:33716|Ensembl:ENSG00000152380|HPRD:18272|Vega:OTTHUMG00000131303 5 5q14.1 family with sequence similarity 151, member B protein-coding FAM151B family with sequence similarity 151, member B O AASA9217|protein FAM151B 20121230 -9606 167681 PRSS35 UNQ522/PRO1057 C6orf158|dJ223E3.1 HGNC:21387|Ensembl:ENSG00000146250|HPRD:07095|Vega:OTTHUMG00000015113 6 6q14.2 protease, serine, 35 protein-coding PRSS35 protease, serine, 35 O inactive serine protease 35 20121230 -9606 167691 LCA5 - C6orf152 HGNC:31923|MIM:611408|Ensembl:ENSG00000135338|HPRD:10791|Vega:OTTHUMG00000015080 6 6q14.1 Leber congenital amaurosis 5 protein-coding LCA5 Leber congenital amaurosis 5 O Lebercilin|leber congenital amaurosis 5 protein 20121230 -9606 167826 OLIG3 RP3-372K1.2 Bhlhb7|bHLHe20 HGNC:18003|MIM:609323|Ensembl:ENSG00000177468|HPRD:17662|Vega:OTTHUMG00000015657 6 6q23.3 oligodendrocyte transcription factor 3 protein-coding OLIG3 oligodendrocyte transcription factor 3 O class B basic helix-loop-helix protein 7|class E basic helix-loop-helix protein 20|oligo3 20121230 -9606 167838 TXLNB RP3-522B19.2 C6orf198|LST001|MDP77|dJ522B19.2 HGNC:21617|MIM:611438|Ensembl:ENSG00000164440|HPRD:10793|Vega:OTTHUMG00000015688 6 6q24.1 taxilin beta protein-coding TXLNB taxilin beta O beta-taxilin|muscle-derived protein 77 20121230 -9606 168002 DACT2 PP13671 C6orf116|DAPPER2|DPR2|RP11-503C24.7|bA503C24.7 HGNC:21231|MIM:608966|Ensembl:ENSG00000164488|HPRD:12345|Vega:OTTHUMG00000016046 6 6q27 dapper, antagonist of beta-catenin, homolog 2 (Xenopus laevis) protein-coding DACT2 dapper, antagonist of beta-catenin, homolog 2 (Xenopus laevis) O dapper antagonist of catenin 2|dapper homolog 2|dapper homolog 2, antagonist of beta-catenin 20121230 -9606 168090 C6orf118 - bA85G2.1|dJ416F21.2 HGNC:21233|Ensembl:ENSG00000112539|HPRD:12844|Vega:OTTHUMG00000015984 6 6q27 chromosome 6 open reading frame 118 protein-coding C6orf118 chromosome 6 open reading frame 118 O dJ416F21.2 (novel protein)|uncharacterized protein C6orf118 20121230 -9606 168330 PRSS3P1 - TRY5 HGNC:43787 7 7q34 protease, serine, 3 pseudogene 1 pseudo PRSS3P1 protease, serine, 3 pseudogene 1 O - 20121230 -9606 168374 ZNF92 - HPF12|HTF12|TF12 HGNC:13168|MIM:603974|Ensembl:ENSG00000146757|HPRD:04919|Vega:OTTHUMG00000156557 7 7q11.21 zinc finger protein 92 protein-coding ZNF92 zinc finger protein 92 O zinc finger protein HTF12 20121230 -9606 168391 GALNTL5 - GALNT15 HGNC:21725|Ensembl:ENSG00000106648|HPRD:13565|Vega:OTTHUMG00000157306 7 7q36.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 protein-coding GALNTL5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 O UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 15|galNAc-T15|polypeptide GalNAc transferase 15|pp-GaNTase 15|protein-UDP acetylgalactosaminyltransferase 15|putative polypeptide N-acetylgalactosaminyltransferase-like protein 5 20121230 -9606 168400 DDX53 - CAGE|CT26 HGNC:20083|Ensembl:ENSG00000184735|HPRD:06466|Vega:OTTHUMG00000021248 X Xp22.11 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 protein-coding DDX53 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 O DEAD box protein 53|DEAD-box protein CAGE|cancer-associated gene protein|cancer/testis antigen 26|probable ATP-dependent RNA helicase DDX53 20121230 -9606 168417 ZNF679 - - HGNC:28650|Ensembl:ENSG00000197123|HPRD:14621|Vega:OTTHUMG00000156486 7 7q11.21 zinc finger protein 679 protein-coding ZNF679 zinc finger protein 679 O hypothetical protein MGC42415 20121230 -9606 168433 RNF133 - - HGNC:21154|Ensembl:ENSG00000188050|HPRD:11505|Vega:OTTHUMG00000157092 7 7q31.32 ring finger protein 133 protein-coding RNF133 ring finger protein 133 O E3 ubiquitin-protein ligase RNF133 20121230 -9606 168448 CDC14C - CDC14B2|CDC14Bretro HGNC:22427 7 7p12.3 CDC14 cell division cycle 14 homolog C (S. cerevisiae) pseudo CDC14C CDC14 cell division cycle 14 homolog C (S. cerevisiae) O - 20121230 -9606 168451 THAP5 - - HGNC:23188|MIM:612534|Ensembl:ENSG00000177683|HPRD:15498|Vega:OTTHUMG00000154951 7 7q31.1 THAP domain containing 5 protein-coding THAP5 THAP domain containing 5 O THAP domain-containing protein 5 20121230 -9606 168455 CCDC71L - C7orf74 HGNC:26685|Ensembl:ENSG00000253276|HPRD:08202|Vega:OTTHUMG00000164150 7 7q22.3 coiled-coil domain containing 71-like protein-coding CCDC71L coiled-coil domain containing 71-like O coiled-coil domain-containing protein 71L 20121230 -9606 168474 SEPHS1P1 - SEPHS1P HGNC:42161 7 7q11.21 selenophosphate synthetase 1 pseudogene 1 pseudo SEPHS1P1 selenophosphate synthetase 1 pseudogene 1 O - 20121230 -9606 168507 PKD1L1 UNQ5785/PRO19563 PRO19563 HGNC:18053|MIM:609721|Ensembl:ENSG00000158683|HPRD:10154|Vega:OTTHUMG00000155649 7 7p12.3 polycystic kidney disease 1 like 1 protein-coding PKD1L1 polycystic kidney disease 1 like 1 O PC1-like 1 protein|polycystic kidney disease protein 1-like 1|polycystin-1L1 20121230 -9606 168537 GIMAP7 - IAN7|hIAN7 HGNC:22404|Ensembl:ENSG00000179144|HPRD:17039|Vega:OTTHUMG00000157626 7 7q36.1 GTPase, IMAP family member 7 protein-coding GIMAP7 GTPase, IMAP family member 7 O GTPase IMAP family member 7|IAN-7|immune associated nucleotide|immunity-associated nucleotide 7 protein 20121230 -9606 168544 ZNF467 - EZI|Zfp467 HGNC:23154|MIM:614040|Ensembl:ENSG00000181444|HPRD:18343|Vega:OTTHUMG00000157883 7 7q36.1 zinc finger protein 467 protein-coding ZNF467 zinc finger protein 467 O zinc finger protein EZI 20121230 -9606 168620 BHLHA15 - BHLHB8|MIST1 HGNC:22265|MIM:608606|Ensembl:ENSG00000180535|HPRD:16356|Vega:OTTHUMG00000154289 7 7q21.3 basic helix-loop-helix family, member a15 protein-coding BHLHA15 basic helix-loop-helix family, member a15 O MIST-1|basic helix-loop-helix domain containing, class B, 8|class A basic helix-loop-helix protein 15|class B basic helix-loop-helix protein 8|class II bHLH protein MIST1|muscle, intestine and stomach expression 1 20121230 -9606 168667 BMPER - CRIM3|CV-2|CV2 HGNC:24154|MIM:608699|Ensembl:ENSG00000164619|HPRD:16368|Vega:OTTHUMG00000128675 7 7p14.3 BMP binding endothelial regulator protein-coding BMPER BMP binding endothelial regulator O BMP-binding endothelial regulator precursor protein|BMP-binding endothelial regulator protein|bone morphogenetic protein-binding endothelial cell precursor-derived regulator|crossveinless 2|crossveinless-2|hCV2 20121230 -9606 168741 PER4 - - - 7 7p21.3 period homolog 3 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 168850 ZNF800 PP902 - HGNC:27267|Ensembl:ENSG00000048405|HPRD:14112|Vega:OTTHUMG00000023456 7 7q31.33 zinc finger protein 800 protein-coding ZNF800 zinc finger protein 800 O - 20121230 -9606 168975 CNBD1 - - HGNC:26663|Ensembl:ENSG00000176571|HPRD:08192|Vega:OTTHUMG00000163743 8 8q21.3 cyclic nucleotide binding domain containing 1 protein-coding CNBD1 cyclic nucleotide binding domain containing 1 O cyclic nucleotide-binding domain-containing protein 1 20121230 -9606 169026 SLC30A8 - ZNT8|ZnT-8 HGNC:20303|MIM:611145|Ensembl:ENSG00000164756|HPRD:15370|Vega:OTTHUMG00000164962 8 8q24.11 solute carrier family 30 (zinc transporter), member 8 protein-coding SLC30A8 solute carrier family 30 (zinc transporter), member 8 O zinc transporter 8|zinc transporter ZnT-8 20121230 -9606 169044 COL22A1 - - HGNC:22989|MIM:610026|Ensembl:ENSG00000169436|HPRD:09885|Vega:OTTHUMG00000150035 8 8q24.3 collagen, type XXII, alpha 1 protein-coding COL22A1 collagen, type XXII, alpha 1 O collagen alpha-1(XXII) chain 20121230 -9606 169166 SNX31 - - HGNC:28605|Ensembl:ENSG00000174226|HPRD:17545|Vega:OTTHUMG00000164725 8 8q22.3 sorting nexin 31 protein-coding SNX31 sorting nexin 31 O sorting nexin-31 20121230 -9606 169200 TMEM64 - - HGNC:25441|Ensembl:ENSG00000180694|HPRD:16822|Vega:OTTHUMG00000157185 8 8q21.3 transmembrane protein 64 protein-coding TMEM64 transmembrane protein 64 O - 20121230 -9606 169270 ZNF596 - - HGNC:27268|Ensembl:ENSG00000172748|HPRD:11731|Vega:OTTHUMG00000086931 8 8p23.3 zinc finger protein 596 protein-coding ZNF596 zinc finger protein 596 O - 20121230 -9606 169355 IDO2 - INDOL1 HGNC:27269|MIM:612129|Ensembl:ENSG00000188676|HPRD:14113|Vega:OTTHUMG00000141271 8 8p11.21 indoleamine 2,3-dioxygenase 2 protein-coding IDO2 indoleamine 2,3-dioxygenase 2 O IDO-2|indoleamine 2,3-dioxygenase-like 1 protein|indoleamine 2,3-dioxygenase-like protein 1|indoleamine-pyrrole 2,3 dioxygenase-like 1|indoleamine-pyrrole 2,3-dioxygenase-like protein 1 20121230 -9606 169436 C9orf96 - RP11-244N20.8|SgK071|Sk521 HGNC:28669|Ensembl:ENSG00000198870|HPRD:12990|Vega:OTTHUMG00000020862 9 9q34.2 chromosome 9 open reading frame 96 protein-coding C9orf96 chromosome 9 open reading frame 96 O protein kinase-like protein SgK071|sugen kinase 071 20121230 -9606 169522 KCNV2 - KV11.1|Kv8.2|RCD3B HGNC:19698|MIM:607604|Ensembl:ENSG00000168263|HPRD:12126|Vega:OTTHUMG00000019449 9 9p24.2 potassium channel, subfamily V, member 2 protein-coding KCNV2 potassium channel, subfamily V, member 2 O potassium voltage-gated channel subfamily V member 2|voltage-gated potassium channel subunit Kv8.2 20121230 -9606 169611 OLFML2A RP11-175D17.4 PRO34319 HGNC:27270|Ensembl:ENSG00000185585|HPRD:14876|Vega:OTTHUMG00000020663 9 9q33.3 olfactomedin-like 2A protein-coding OLFML2A olfactomedin-like 2A O olfactomedin-like protein 2A|photomedin-1 20121230 -9606 169693 TMEM252 - C9orf71|RP11-274B18.1 HGNC:28537|Ensembl:ENSG00000181778|HPRD:18569|Vega:OTTHUMG00000019967 9 9q21.11 transmembrane protein 252 protein-coding TMEM252 transmembrane protein 252 O transmembrane protein C9orf71 20121230 -9606 169714 QSOX2 RP11-83N9.4 QSCN6L1|SOXN HGNC:30249|MIM:612860|Ensembl:ENSG00000165661|HPRD:17942|Vega:OTTHUMG00000020923 9 9q34.3 quiescin Q6 sulfhydryl oxidase 2 protein-coding QSOX2 quiescin Q6 sulfhydryl oxidase 2 O neuroblastoma-derived sulfhydryl oxidase|quiescin Q6-like 1|quiescin Q6-like protein 1|sulfhydryl oxidase 2 20121230 -9606 169792 GLIS3 - ZNF515 HGNC:28510|MIM:610192|Ensembl:ENSG00000107249|HPRD:13582|Vega:OTTHUMG00000019463 9 9p24.2 GLIS family zinc finger 3 protein-coding GLIS3 GLIS family zinc finger 3 O GLI-similar 3|OK/KNS-cl.4|zinc finger protein 515|zinc finger protein GLIS3 20121230 -9606 169834 ZNF883 - - HGNC:27271 9 9q32 zinc finger protein 883 protein-coding ZNF883 zinc finger protein 883 O - 20121230 -9606 169841 ZNF169 RP11-307E17.10-001 - HGNC:12957|MIM:603404|Ensembl:ENSG00000175787|HPRD:04554|Vega:OTTHUMG00000020264 9 9q22.32 zinc finger protein 169 protein-coding ZNF169 zinc finger protein 169 O - 20121230 -9606 169966 FAM46D - CT1.26|CT112 HGNC:28399|Ensembl:ENSG00000174016|HPRD:06643|Vega:OTTHUMG00000021902 X Xq21.1 family with sequence similarity 46, member D protein-coding FAM46D family with sequence similarity 46, member D O cancer/testis antigen 112|protein FAM46D 20121230 -9606 169981 SPIN3 - SPIN-3|bA445O16.1 HGNC:27272|Ensembl:ENSG00000204271|HPRD:18097|Vega:OTTHUMG00000021677 X Xp11.21 spindlin family, member 3 protein-coding SPIN3 spindlin family, member 3 O bA445O16.1 (DXF34)|spindlin-3|spindlin-like protein 3 20121230 -9606 170062 FAM47B RP13-520K9.1 - HGNC:26659|Ensembl:ENSG00000189132|HPRD:06559|Vega:OTTHUMG00000021345 X Xp21.1 family with sequence similarity 47, member B protein-coding FAM47B family with sequence similarity 47, member B O protein FAM47B 20121230 -9606 170063 CXorf22 RP11-307A17.1 - HGNC:28546|Ensembl:ENSG00000165164|HPRD:06649|Vega:OTTHUMG00000021350 X Xp21.1 chromosome X open reading frame 22 protein-coding CXorf22 chromosome X open reading frame 22 O uncharacterized protein CXorf22 20121230 -9606 170067 SUPT20HL2 - FAM48B1|FAM48B2 HGNC:31797 X Xp22.11 suppressor of Ty 20 homolog (S. cerevisiae)-like 2 protein-coding SUPT20HL2 suppressor of Ty 20 homolog (S. cerevisiae)-like 2 O family with sequence similarity 48, member B1|family with sequence similarity 48, member B2|putative protein FAM48B2 20121230 -9606 170082 TCEANC - - HGNC:28277|Ensembl:ENSG00000176896 X Xp22.2 transcription elongation factor A (SII) N-terminal and central domain containing protein-coding TCEANC transcription elongation factor A (SII) N-terminal and central domain containing O TFIIS central domain-containing protein 1|TFS2-M domain-containing protein 1|transcription elongation factor A N-terminal and central domain-containing protein 20121230 -9606 170261 ZCCHC12 - PNMA7A|SIZN|SIZN1 HGNC:27273|MIM:300701|Ensembl:ENSG00000174460|HPRD:06616|Vega:OTTHUMG00000022261 X Xq24 zinc finger, CCHC domain containing 12 protein-coding ZCCHC12 zinc finger, CCHC domain containing 12 O 2810028A01Rik|paraneoplastic Ma antigen family member 7A|smad-interacting zinc finger protein 1|zinc finger CCHC domain-containing protein 12 20121230 -9606 170302 ARX - CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS HGNC:18060|MIM:300382|Ensembl:ENSG00000004848|HPRD:02307|Vega:OTTHUMG00000021275 X Xp21.3 aristaless related homeobox protein-coding ARX aristaless related homeobox O aristaless-related homeobox, X-linked|cancer/testis antigen 121|homeobox protein ARX 20121230 -9606 170370 FAM170B - C10orf73 HGNC:19736|Ensembl:ENSG00000172538|Vega:OTTHUMG00000018187 10 10q11.23 family with sequence similarity 170, member B protein-coding FAM170B family with sequence similarity 170, member B O putative protein FAM170B 20121230 -9606 170371 C10orf128 RP11-507P23.5 - HGNC:27274|Ensembl:ENSG00000204161|Vega:OTTHUMG00000018188 10 10q11.23 chromosome 10 open reading frame 128 protein-coding C10orf128 chromosome 10 open reading frame 128 O putative uncharacterized protein C10orf128 20121230 -9606 170384 FUT11 - - HGNC:19233|Ensembl:ENSG00000196968|HPRD:13555|Vega:OTTHUMG00000018483 10 10q22.2 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) protein-coding FUT11 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) O alpha-(1,3)-fucosyltransferase 11|fuc-TXI|fucT-XI|fucosyltransferase XI|galactoside 3-L-fucosyltransferase 11 20121230 -9606 170392 OIT3 UNQ826/PRO1753 LZP HGNC:29953|MIM:609330|Ensembl:ENSG00000138315|HPRD:17660|Vega:OTTHUMG00000018444 10 10q22.1 oncoprotein induced transcript 3 protein-coding OIT3 oncoprotein induced transcript 3 O liver-specific ZP domain-containing protein|liver-specific zona pellucida domain-containing protein|oncoprotein-induced transcript 3 protein 20121230 -9606 170393 C10orf91 - RP11-432J24.4|bA432J24.4 HGNC:27275|Ensembl:ENSG00000180066|HPRD:12557|Vega:OTTHUMG00000019289 10 10q26.3 chromosome 10 open reading frame 91 protein-coding C10orf91 chromosome 10 open reading frame 91 O uncharacterized protein C10orf91 20121230 -9606 170394 PWWP2B - PWWP2|RP11-273H7.1|bA432J24.1|pp8607 HGNC:25150|Ensembl:ENSG00000171813|HPRD:11465|Vega:OTTHUMG00000019286 10 10q26.3 PWWP domain containing 2B protein-coding PWWP2B PWWP domain containing 2B O PWWP domain containing 2|PWWP domain-containing protein 2B 20121230 -9606 170425 LOC170425 - - - 10 10q23.1 uncharacterized LOC170425 miscRNA - - - - 20121230 -9606 170463 SSBP4 - - HGNC:15676|MIM:607391|Ensembl:ENSG00000130511|HPRD:09579 19 19p13.1 single stranded DNA binding protein 4 protein-coding SSBP4 single stranded DNA binding protein 4 O single-stranded DNA-binding protein 4 20121230 -9606 170474 HFM - - MIM:164210 14 14q32 Hemifacial microsomia unknown - - - - 20120622 -9606 170482 CLEC4C UNQ9361/PRO34150 BDCA2|CD303|CLECSF11|CLECSF7|DLEC|HECL|PRO34150 HGNC:13258|MIM:606677|Ensembl:ENSG00000198178|HPRD:09453|Vega:OTTHUMG00000168441 12 12p13.2-p12.3 C-type lectin domain family 4, member C protein-coding CLEC4C C-type lectin domain family 4, member C O BDCA-2|C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 11|C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 7|C-type lectin domain family 4 member C|C-type lectin superfamily member 7|blood dendritic cell antigen 2 protein|dendritic cell lectin b|dendritic lectin 20121230 -9606 170485 ARF4P2 - dJ885L7.7 HGNC:16599 20 20q13.33 ADP-ribosylation factor 4 pseudogene 2 pseudo ARF4P2 ADP-ribosylation factor 4 pseudogene 2 O - 20121230 -9606 170487 ACTL10 - C20orf134|dJ63M2.2 HGNC:16127|Ensembl:ENSG00000182584|HPRD:18570|Vega:OTTHUMG00000032262 20 20q11.22 actin-like 10 protein-coding ACTL10 actin-like 10 O actin-like protein 10 20121230 -9606 170503 CDC42P1 - bK3216D2.3 HGNC:16339 20 20q11.22 cell division cycle 42 pseudogene 1 pseudo CDC42P1 cell division cycle 42 pseudogene 1 O - 20121230 -9606 170504 COX6CP2 - dJ894K16.1 HGNC:16600 20 20q13.13 cytochrome c oxidase subunit VIc pseudogene 2 pseudo COX6CP2 cytochrome c oxidase subunit VIc pseudogene 2 O - 20121230 -9606 170506 DHX36 - DDX36|G4R1|MLEL1|RHAU HGNC:14410|MIM:612767|Ensembl:ENSG00000174953|HPRD:09918|Vega:OTTHUMG00000159109 3 3q25.2 DEAH (Asp-Glu-Ala-His) box polypeptide 36 protein-coding DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 O DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 36|DEAH box protein 36|G4 resolvase-1|MLE-like protein 1|RNA helicase associated with AU-rich element ARE|probable ATP-dependent RNA helicase DHX36 20121230 -9606 170507 DFNA52 - DFNA42 HGNC:15821|MIM:607683 5 5q31.1-q32 deafness, autosomal dominant 52 unknown DFNA52 deafness, autosomal dominant 52 O - 20120622 -9606 170508 DFNB33 - - HGNC:16359|MIM:607239 10 10p11.23-q21.1 deafness, autosomal recessive 33 unknown DFNB33 deafness, autosomal recessive 33 O - 20120622 -9606 170510 EIF4EBP2P - dJ862K6.3 HGNC:16596 20 20q13.11 eukaryotic translation initiation factor 4E binding protein 2 pseudogene pseudo EIF4EBP2P eukaryotic translation initiation factor 4E binding protein 2 pseudogene O - 20121230 -9606 170511 ENSAP1 - ENSAP|dJ822J19.1 HGNC:16588 20 20p12.1 endosulfine alpha pseudogene 1 pseudo ENSAP1 endosulfine alpha pseudogene 1 O - 20121230 -9606 170513 FAT1P1 - dJ697P8.1 HGNC:16582 20 20p12.2 FAT tumor suppressor homolog 1 (Drosophila) pseudogene 1 pseudo FAT1P1 FAT tumor suppressor homolog 1 (Drosophila) pseudogene 1 O - 20121230 -9606 170514 FTLP1 - FTLP|bA465L10.3 HGNC:16547 20 20q13.12 ferritin, light polypeptide pseudogene 1 pseudo FTLP1 ferritin, light polypeptide pseudogene 1 O - 20121230 -9606 170516 GAPDHP2 - GAPDP2|dJ585I14.1 HGNC:16577 20 20p12.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 2 pseudo GAPDHP2 glyceraldehyde-3-phosphate dehydrogenase pseudogene 2 O - 20121230 -9606 170517 GCNT1P1 - GCNT1P|bA189K21.2 HGNC:16532 20 20p11.23 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 1 pseudo GCNT1P1 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 1 O - 20121230 -9606 170522 GLRXP1 - GLRXP|bA425M5.1 HGNC:16544 20 20q11.2 glutaredoxin (thioltransferase) pseudogene 1 pseudo GLRXP1 glutaredoxin (thioltransferase) pseudogene 1 O - 20121230 -9606 170523 GSTM3P1 - GSTM3P|dJ984P4.2 HGNC:16606 20 20p11.22 glutathione S-transferase mu 3 pseudogene 1 pseudo GSTM3P1 glutathione S-transferase mu 3 pseudogene 1 O - 20121230 -9606 170524 HNRNPA1P3 - HNRPA1P3|dJ447F3.1 HGNC:16567 20 20q13.12 heterogeneous nuclear ribonucleoprotein A1 pseudogene 3 pseudo HNRNPA1P3 heterogeneous nuclear ribonucleoprotein A1 pseudogene 3 O - 20121230 -9606 170526 HNRNPA3P2 - HNRPA3P|HNRPA3P2|dJ977B1.2 HGNC:16605 20 20q11.23 heterogeneous nuclear ribonucleoprotein A3 pseudogene 2 pseudo HNRNPA3P2 heterogeneous nuclear ribonucleoprotein A3 pseudogene 2 O - 20121230 -9606 170527 KRT18P3 - bA359G22.1 HGNC:16540|Vega:OTTHUMG00000032046 20 20p11.21 keratin 18 pseudogene 3 pseudo KRT18P3 keratin 18 pseudogene 3 O - 20121230 -9606 170529 RPSAP1 - LAMR1P|LAMR1P1|RPSA_24_1712|dJ1193N1.1 HGNC:16560 20 20q13.13 ribosomal protein SA pseudogene 1 pseudo RPSAP1 ribosomal protein SA pseudogene 1 O - 20121230 -9606 170530 MRX78 - - HGNC:17942|MIM:300551 X Xp11.4-q21.1 mental retardation, X-linked 78 unknown MRX78 mental retardation, X-linked 78 O - 20120622 -9606 170532 OTSC3 - - HGNC:17831|MIM:608244 6 6p22.3-p21.2 otosclerosis 3 unknown OTSC3 otosclerosis 3 O - 20120622 -9606 170533 PA2G4P2 - PA2G4L5|bA102J14.2 HGNC:16531 20 20p12.1 proliferation-associated 2G4 pseudogene 2 pseudo PA2G4P2 proliferation-associated 2G4 pseudogene 2 O - 20121230 -9606 170534 PARK10 - AAOPD HGNC:17833|MIM:606852 1 1p Parkinson disease 10 (susceptibility) unknown PARK10 Parkinson disease 10 (susceptibility) O - 20120622 -9606 170535 PGAM3P - dJ1128N12.1 HGNC:16557 20 20p12.2 phosphoglycerate mutase 3, pseudogene pseudo PGAM3P phosphoglycerate mutase 3, pseudogene O - 20121230 -9606 170536 PPIAP21 - PPIAL|dJ269M15.1 HGNC:16246 20 20q12 peptidylprolyl isomerase A (cyclophilin A) pseudogene 21 pseudo PPIAP21 peptidylprolyl isomerase A (cyclophilin A) pseudogene 21 O - 20121230 -9606 170537 PPIAP2 - bA384D7.2 HGNC:16542 20 20p11.21 peptidylprolyl isomerase A (cyclophilin A) pseudogene 2 pseudo PPIAP2 peptidylprolyl isomerase A (cyclophilin A) pseudogene 2 O - 20121230 -9606 170539 PPIAP3 - bA425M5.2 HGNC:16545 20 20q11.23 peptidylprolyl isomerase A (cyclophilin A) pseudogene 3 pseudo PPIAP3 peptidylprolyl isomerase A (cyclophilin A) pseudogene 3 O - 20121230 -9606 170540 PPIAP17 - PPIP11|bA494B22.1 HGNC:16334 20 20p12.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 17 pseudo PPIAP17 peptidylprolyl isomerase A (cyclophilin A) pseudogene 17 O - 20121230 -9606 170541 PSMD10P1 - PSMD10P|dJ914P20.4 HGNC:16602 20 20q13.13 proteasome 26S subunit, non-ATPase, 10 pseudogene 1 pseudo PSMD10P1 proteasome 26S subunit, non-ATPase, 10 pseudogene 1 O - 20121230 -9606 170542 PTMAP6 - dJ539E24.2 HGNC:16573 20 20q13.31 prothymosin, alpha pseudogene 6 pseudo PTMAP6 prothymosin, alpha pseudogene 6 O - 20121230 -9606 170543 RNF11P2 - RNF11B|bA280O9.1 HGNC:16535 20 20p12.1 ring finger protein 11 pseudogene 2 pseudo RNF11P2 ring finger protein 11 pseudogene 2 O - 20121230 -9606 170545 SCA21 - - HGNC:17172|MIM:607454 7 7p21.3-p15.1 spinocerebellar ataxia 21 unknown SCA21 spinocerebellar ataxia 21 O - 20120622 -9606 170547 AIMP1P1 - SCYE1P|bA400P21.1 HGNC:16543 20 20p12.1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 pseudogene 1 pseudo AIMP1P1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 pseudogene 1 O - 20121230 -9606 170548 SF3A3P1 - SF3A3P|dJ581P3.1 HGNC:16576 20 20p13 splicing factor 3a, subunit 3 pseudogene 1 pseudo SF3A3P1 splicing factor 3a, subunit 3 pseudogene 1 O - 20121230 -9606 170549 SNAP23P - dJ155G6.3 HGNC:16561 20 20q13.13 synaptosomal-associated protein, 23kDa pseudogene pseudo SNAP23P synaptosomal-associated protein, 23kDa pseudogene O - 20121230 -9606 170550 SNRPFP1 - dJ1041C10.2 HGNC:16551 20 20q13.13 small nuclear ribonucleoprotein polypeptide F pseudogene 1 pseudo SNRPFP1 small nuclear ribonucleoprotein polypeptide F pseudogene 1 O - 20121230 -9606 170552 SRMP1 - dJ1057D4.1 HGNC:16552 20 20q13.13 spermidine synthase pseudogene 1 pseudo SRMP1 spermidine synthase pseudogene 1 O - 20121230 -9606 170554 DYNLT3P1 - TCTE1P|dJ531H16.2 HGNC:16571 20 20p12.1 dynein, light chain, Tctex-type 3 pseudogene 1 pseudo DYNLT3P1 dynein, light chain, Tctex-type 3 pseudogene 1 O - 20121230 -9606 170555 TPM3P2 - TPM5P|dJ1125A11.2 HGNC:16556 20 20q11.22 tropomyosin 3 pseudogene 2 pseudo TPM3P2 tropomyosin 3 pseudogene 2 O - 20121230 -9606 170556 UBE2V1P1 - dJ687F11.3 HGNC:16581 20 20p13 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 pseudo UBE2V1P1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 O - 20121230 -9606 170557 UBL6 - - HGNC:15953 20 - ubiquitin-like 6 protein-coding UBL6 ubiquitin-like 6 O - 20080828 -9606 170559 XPOTP1 - XPO3P1|dJ785G19.1 HGNC:16586 20 20q11.22 exportin, tRNA (nuclear export receptor for tRNAs) pseudogene 1 pseudo XPOTP1 exportin, tRNA (nuclear export receptor for tRNAs) pseudogene 1 O - 20121230 -9606 170572 HTR3C - - HGNC:24003|MIM:610121|Ensembl:ENSG00000178084|HPRD:17120|Vega:OTTHUMG00000156862 3 3q27.1 5-hydroxytryptamine (serotonin) receptor 3C, ionotropic protein-coding HTR3C 5-hydroxytryptamine (serotonin) receptor 3C, ionotropic O 5-HT3-C|5-HT3C|5-hydroxytryptamine (serotonin) receptor 3, family member C|5-hydroxytryptamine receptor 3 subunit C|5-hydroxytryptamine receptor 3C|serotonin receptor 3C 20121230 -9606 170575 GIMAP1 - HIMAP1|IMAP1|IMAP38 HGNC:23237|MIM:608084|Ensembl:ENSG00000213203|HPRD:16278|Vega:OTTHUMG00000157489 7 7q36.1 GTPase, IMAP family member 1 protein-coding GIMAP1 GTPase, IMAP family member 1 O GTPase IMAP family member 1|immunity associated protein 1 20121230 -9606 170589 GPHA2 - A2|GPA2|ZSIG51 HGNC:18054|MIM:609651|Ensembl:ENSG00000149735|HPRD:17052|Vega:OTTHUMG00000165631 11 11q13.1 glycoprotein hormone alpha 2 protein-coding GPHA2 glycoprotein hormone alpha 2 O cysteine knot protein|glycoprotein alpha 2|glycoprotein hormone alpha-2|putative secreted protein Zsig51|thyrostimulin subunit alpha 20121230 -9606 170591 S100Z - Gm625|S100-zeta HGNC:30367|MIM:610103|Ensembl:ENSG00000171643|HPRD:15291|Vega:OTTHUMG00000162441 5 5q13.3 S100 calcium binding protein Z protein-coding S100Z S100 calcium binding protein Z O S100 calcium binding protein, zeta|S100 calcium-binding protein Z|protein S100-Z 20121230 -9606 170592 UVM1 - - MIM:606660 3 3q24-q26 Melanoma, uveal, susceptibility to, 1 unknown - - - - 20120622 -9606 170593 UBM2 - - MIM:606661 3 3p25.2-p25.1 Melanoma, uveal, susceptibility to, 2 unknown - - - - 20120622 -9606 170594 WS2C - - MIM:606662 8 8p23 Waardenburg syndrome, type IIC unknown - - - - 20120622 -9606 170595 IBD8 - - HGNC:20235|MIM:606668 16 16p inflammatory bowel disease 8 unknown IBD8 inflammatory bowel disease 8 O - 20120622 -9606 170622 COMMD6 RP11-173B14.2 Acrg HGNC:24015|MIM:612377|Ensembl:ENSG00000188243|HPRD:13084|Vega:OTTHUMG00000017089 13 13q22 COMM domain containing 6 protein-coding COMMD6 COMM domain containing 6 O Acrg embryonic lethality minimal region ortholog|COMM domain-containing protein 6 20121230 -9606 170626 XAGE3 RP13-77O11.6 CT12.3a|CT12.3b|GAGED4|PLAC6|XAGE-3|pp9012 HGNC:14618|MIM:300740|Ensembl:ENSG00000171402|HPRD:06676|Vega:OTTHUMG00000021587 X Xp11.22 X antigen family, member 3 protein-coding XAGE3 X antigen family, member 3 O CT12.3|G antigen family D member 4|G antigen, family D, 4|cancer/testis antigen 12.3|cancer/testis antigen family 12, member 3a|cancer/testis antigen family 12, member 3b|placenta-specific 6|placenta-specific gene 6 protein|protein XAGE-3 20121230 -9606 170627 XAGE5 RP13-77O11.4 CT12.5|GAGED5|XAGE-5 HGNC:30930|Ensembl:ENSG00000171405|HPRD:06754|Vega:OTTHUMG00000021589 X Xp11.22 X antigen family, member 5 protein-coding XAGE5 X antigen family, member 5 O G antigen family D member 5|G antigen, family D, 5|cancer/testis antigen 12.5|cancer/testis antigen family 12, member 5|protein XAGE-5 20121230 -9606 170679 PSORS1C1 DADB-141O4.2 C6orf16|SEEK1 HGNC:17202|MIM:613525|Ensembl:ENSG00000204540|HPRD:17920|Vega:OTTHUMG00000031077 6 6p21.3 psoriasis susceptibility 1 candidate 1 protein-coding PSORS1C1 psoriasis susceptibility 1 candidate 1 O psoriasis susceptibility 1 candidate gene 1 protein 20121230 -9606 170680 PSORS1C2 DADB-141O4.1 C6orf17|SPR1 HGNC:17199|MIM:613526|Ensembl:ENSG00000204538|HPRD:17921|Vega:OTTHUMG00000031081 6 6p21.3 psoriasis susceptibility 1 candidate 2 protein-coding PSORS1C2 psoriasis susceptibility 1 candidate 2 O psoriasis susceptibility 1 candidate gene 2 protein 20121230 -9606 170682 SLEH1 - - HGNC:17420|MIM:607279 11 11q14 systemic lupus erythematosus with hemolytic anemia 1 unknown SLEH1 systemic lupus erythematosus with hemolytic anemia 1 O - 20120622 -9606 170685 NUDT10 RP11-348F1.4 APS2|DIPP3a|hDIPP3alpha HGNC:17621|MIM:300527|Ensembl:ENSG00000122824|HPRD:17651|Vega:OTTHUMG00000021530 X Xp11.23 nudix (nucleoside diphosphate linked moiety X)-type motif 10 protein-coding NUDT10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 O DIPP-3-alpha|DIPP3-alpha|diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 3-alpha|diadenosine hexaphosphate hydrolase (AMP-forming)|diphosphoinositol polyphosphate phosphohydrolase 3-alpha|diphosphoinositol polyphosphate phosphohydrolase type 3 alpha|hAps2|nucleoside diphosphate-linked moiety X motif 10|nudix motif 10 20121230 -9606 170689 ADAMTS15 - - HGNC:16305|MIM:607509|Ensembl:ENSG00000166106|HPRD:06330|Vega:OTTHUMG00000165657 11 11q25 ADAM metallopeptidase with thrombospondin type 1 motif, 15 protein-coding ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 O A disintegrin and metalloproteinase with thrombospondin motifs 15|ADAM-TS 15|ADAM-TS15|ADAMTS-15|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 15, preproprotein|metalloprotease disintegrin 15 with thrombospondin domains 20121230 -9606 170690 ADAMTS16 - ADAMTS16s HGNC:17108|MIM:607510|Ensembl:ENSG00000145536|HPRD:06331|Vega:OTTHUMG00000161663 5 5p15 ADAM metallopeptidase with thrombospondin type 1 motif, 16 protein-coding ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 O A disintegrin and metalloproteinase with thrombospondin motifs 16|ADAM-TS 16|ADAM-TS16|ADAMTS-16|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16 20121230 -9606 170691 ADAMTS17 - - HGNC:17109|MIM:607511|Ensembl:ENSG00000140470|HPRD:06332|Vega:OTTHUMG00000149867 15 15q24 ADAM metallopeptidase with thrombospondin type 1 motif, 17 protein-coding ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 O A disintegrin and metalloproteinase with thrombospondin motifs 17|ADAM-TS 17|ADAM-TS17|ADAMTS-17|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 17 20121230 -9606 170692 ADAMTS18 - ADAMTS21|KNO2 HGNC:17110|MIM:607512|Ensembl:ENSG00000140873|HPRD:06333|Vega:OTTHUMG00000137619 16 16q23 ADAM metallopeptidase with thrombospondin type 1 motif, 18 protein-coding ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 O A disintegrin and metalloproteinase with thrombospondin motifs 18|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 21|disintegrin and metalloprotease-like protein 20121230 -9606 170712 COX7B2 - - HGNC:24381|MIM:609811|Ensembl:ENSG00000170516|HPRD:13089|Vega:OTTHUMG00000099423 4 4p12 cytochrome c oxidase subunit VIIb2 protein-coding COX7B2 cytochrome c oxidase subunit VIIb2 O cytochrome c oxidase polypeptide VIIb2|cytochrome c oxidase subunit 7B2, mitochondrial 20121230 -9606 170815 BMIQ1 - - HGNC:23827|MIM:606641 7 7q32.3 body mass index QTL 1 unknown BMIQ1 body mass index QTL 1 O - 20120622 -9606 170825 GSX2 - GSH2 HGNC:24959|Ensembl:ENSG00000180613|HPRD:13612|Vega:OTTHUMG00000128696 4 4q12 GS homeobox 2 protein-coding GSX2 GS homeobox 2 O homeobox protein GSH-2 20121230 -9606 170850 KCNG3 - KV10.1|KV6.3 HGNC:18306|MIM:606767|Ensembl:ENSG00000171126|HPRD:16232|Vega:OTTHUMG00000128604 2 2p21 potassium voltage-gated channel, subfamily G, member 3 protein-coding KCNG3 potassium voltage-gated channel, subfamily G, member 3 O potassium voltage-gated channel subfamily G member 3|voltage-gated potassium channel 6.3|voltage-gated potassium channel Kv10.1|voltage-gated potassium channel subunit Kv10.1|voltage-gated potassium channel subunit Kv6.3|voltage-gated potassium channel subunit Kv6.4 20121230 -9606 170949 DEFT1P - DEFQ1|DEFT1 HGNC:18339 8 8p23.1 defensin, theta 1 pseudogene pseudo DEFT1P defensin, theta 1 pseudogene O - 20121230 -9606 170954 PPP1R18 DAAP-285E11.2 HKMT1098|KIAA1949 HGNC:29413|MIM:610990|Ensembl:ENSG00000146112|Vega:OTTHUMG00000031237 6 6p21.3 protein phosphatase 1, regulatory subunit 18 protein-coding PPP1R18 protein phosphatase 1, regulatory subunit 18 O phostensin|protein phosphatase 1 F-actin cytoskeleton targeting subunit|protein phosphatase 1 regulatory subunit 18 20121230 -9606 170958 ZNF525 - - HGNC:29423 19 19q13.42 zinc finger protein 525 pseudo ZNF525 zinc finger protein 525 O - 20121230 -9606 170959 ZNF431 - - HGNC:20809|Ensembl:ENSG00000196705|HPRD:15789 19 19p12 zinc finger protein 431 protein-coding ZNF431 zinc finger protein 431 O - 20121230 -9606 170960 ZNF721 - - HGNC:29425|Ensembl:ENSG00000182903|HPRD:13910|Vega:OTTHUMG00000112450 4 4p16.3 zinc finger protein 721 protein-coding ZNF721 zinc finger protein 721 O - 20121230 -9606 170961 ANKRD24 - - HGNC:29424|Ensembl:ENSG00000089847 19 19p13.3 ankyrin repeat domain 24 protein-coding ANKRD24 ankyrin repeat domain 24 O ankyrin repeat domain-containing protein 24 20121230 -9606 171013 SLI1 - - MIM:606711 16 16q Specific language impairment QTL, 1 unknown - - - - 20120622 -9606 171014 SLI2 - - MIM:606712 19 19q Specific language impairment QTL, 2 unknown - - - - 20120622 -9606 171017 ZNF384 - CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 HGNC:11955|MIM:609951|Ensembl:ENSG00000126746|HPRD:18332|Vega:OTTHUMG00000168716 12 12p12 zinc finger protein 384 protein-coding ZNF384 zinc finger protein 384 O CAG repeat protein 1|Cas-interacting zinc finger protein|expanded repeat domain, CAG/CTG 2|nuclear matrix transcription factor 4|trinucleotide repeat-containing gene 1 protein 20121230 -9606 171019 ADAMTS19 - - HGNC:17111|MIM:607513|Ensembl:ENSG00000145808|HPRD:06334|Vega:OTTHUMG00000128990 5 5q23.3 ADAM metallopeptidase with thrombospondin type 1 motif, 19 protein-coding ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 O A disintegrin and metalloproteinase with thrombospondin motifs 19|ADAM-TS 19|ADAM-TS19|ADAMTS-19|a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19 20121230 -9606 171022 ABHD11-AS1 - NCRNA00035|WBSCR26 HGNC:18289|MIM:612545 7 7q11.23 ABHD11 antisense RNA 1 (tail to tail) miscRNA ABHD11-AS1 ABHD11 antisense RNA 1 (tail to tail) O - 20121230 -9606 171023 ASXL1 RP11-358N2.1 BOPS|MDS HGNC:18318|MIM:612990|Ensembl:ENSG00000171456|HPRD:16516|Vega:OTTHUMG00000032218 20 20q11 additional sex combs like 1 (Drosophila) protein-coding ASXL1 additional sex combs like 1 (Drosophila) O additional sex combs-like protein 1|putative Polycomb group protein ASXL1 20121230 -9606 171024 SYNPO2 - - HGNC:17732|Ensembl:ENSG00000172403|HPRD:15456|Vega:OTTHUMG00000161165 4 4q26 synaptopodin 2 protein-coding SYNPO2 synaptopodin 2 O genethonin 2|genethonin-2|myopodin|synaptopodin-2 20121230 -9606 171089 DYX5 - - HGNC:18343|MIM:606896 3 3p12-q13 dyslexia susceptibility 5 unknown DYX5 dyslexia susceptibility 5 O - 20120622 -9606 171157 SHFM5 - - HGNC:35421|MIM:606708 2 2q31 split hand/foot malformation (ectrodactyly) type 5 unknown SHFM5 split hand/foot malformation (ectrodactyly) type 5 O - 20120622 -9606 171169 SPACA4 UNQ3046/PRO9862 SAMP14 HGNC:16441|MIM:609932|Ensembl:ENSG00000177202|HPRD:15421 19 19q13.33 sperm acrosome associated 4 protein-coding SPACA4 sperm acrosome associated 4 O sperm acrosomal membrane protein 14|sperm acrosomal membrane-associated protein 14|sperm acrosome membrane-associated protein 4 20121230 -9606 171176 NICN2P - - HGNC:18322 X Xp11.3-p11.22 nicolin 2, pseudogene pseudo NICN2P nicolin 2, pseudogene O - 20121230 -9606 171177 RHOV - ARHV|CHP|WRCH2 HGNC:18313|Ensembl:ENSG00000104140|HPRD:10191|Vega:OTTHUMG00000130134 15 15q13.3 ras homolog family member V protein-coding RHOV ras homolog family member V O CDC42-like GTPase 2|GTP-binding protein-like 2|Rho GTPase-like protein ARHV|WRCH-2|WRCH1-related GTPase|Wnt-1 regulated Cdc42 homolog 2|Wnt-1 responsive Cdc42 homolog 2|ras homolog gene family, member V|rho-related GTP-binding protein RhoV 20121230 -9606 171220 DSTNP2 - - HGNC:34546 12 12p13 destrin (actin depolymerizing factor) pseudogene 2 pseudo DSTNP2 destrin (actin depolymerizing factor) pseudogene 2 O - 20121230 -9606 171221 DNAJB1P1 - DNAJB1P|HSP40|psiHSP40 HGNC:24988 2 2q32.3 DnaJ (Hsp40) homolog, subfamily B, member 1 pseudogene 1 pseudo DNAJB1P1 DnaJ (Hsp40) homolog, subfamily B, member 1 pseudogene 1 O - 20121230 -9606 171222 UBE2L5P RP11-223E19.1 UBCH7N2|UBE2L5 HGNC:13477 13 13q12.3 ubiquitin-conjugating enzyme E2L 5 (pseudogene) pseudo UBE2L5P ubiquitin-conjugating enzyme E2L 5 (pseudogene) O - 20121230 -9606 171389 NLRP6 - CLR11.4|NALP6|PAN3|PYPAF5 HGNC:22944|MIM:609650|Ensembl:ENSG00000174885|HPRD:14806|Vega:OTTHUMG00000119070 11 11p15 NLR family, pyrin domain containing 6 protein-coding NLRP6 NLR family, pyrin domain containing 6 O NACHT, LRR and PYD containing protein 6|NACHT, LRR and PYD domains-containing protein 6|NACHT, leucine rich repeat and PYD containing 6|PYRIN-containing APAF1-like protein 5|angiotensin II/vasopressin receptor|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 6 20121230 -9606 171391 NS3BP - - - 11 11p15.5 NS3BP miscRNA - - - - 20121230 -9606 171392 ZNF675 - TBZF|TIZ HGNC:30768|Ensembl:ENSG00000197372|HPRD:18193 19 19p12 zinc finger protein 675 protein-coding ZNF675 zinc finger protein 675 O TRAF6 inhibitory zinc finger|TRAF6-binding zinc finger protein|TRAF6-inhibitory zinc finger protein 20121230 -9606 171416 AF357533 - - - 1 1q31.3 thioredoxin pseudogene pseudo - - - - 20121230 -9606 171417 LOC171417 - - - 2 2q31.1 thioredoxin 1 pseudogene 7 pseudo - - - - 20121230 -9606 171418 GLRXP2 - - HGNC:18376 14 14q32.11 glutaredoxin (thioltransferase) pseudogene 2 pseudo GLRXP2 glutaredoxin (thioltransferase) pseudogene 2 O - 20121230 -9606 171419 LOC171419 - - - 1 1q12 thioredoxin pseudogene pseudo - - - - 20121230 -9606 171420 EPF5 - - - 9 9q32 EPF5 pseudogene pseudo - - - - 20121230 -9606 171421 EPF8 - - - 16 16p12.1 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 171422 CRPP1 - - HGNC:2368 1 1q23.2 C-reactive protein pseudogene 1 pseudo CRPP1 C-reactive protein pseudogene 1 O - 20121230 -9606 171423 PDIA3P - ERp60|GRP58P HGNC:4607 1 1q21.1 protein disulfide isomerase family A, member 3 pseudogene pseudo PDIA3P protein disulfide isomerase family A, member 3 pseudogene O - 20121230 -9606 171424 SPA17P1 - Sp17-2 HGNC:23224 10 10q22.2 sperm autoantigenic protein 17 pseudogene 1 pseudo SPA17P1 sperm autoantigenic protein 17 pseudogene 1 O - 20121230 -9606 171425 CLYBL RP11-134O15.1 CLB|bA134O15.1 HGNC:18355|MIM:609686|Ensembl:ENSG00000125246|HPRD:10838|Vega:OTTHUMG00000017278 13 13q32 citrate lyase beta like protein-coding CLYBL citrate lyase beta like O citrate lyase beta-like|citrate lyase subunit beta-like protein, mitochondrial 20121230 -9606 171427 CYP2F1P - - HGNC:18851 19 19q13.2 cytochrome P450, family 2, subfamily F, polypeptide 1 pseudogene pseudo CYP2F1P cytochrome P450, family 2, subfamily F, polypeptide 1 pseudogene O - 20121230 -9606 171472 SRSF10P2 - FUSIP1P2|SFRS13AP2|dJ836E8.1|pFUSIP1 HGNC:24823 20 20p12.3 serine/arginine-rich splicing factor 10 pseudogene 2 pseudo SRSF10P2 serine/arginine-rich splicing factor 10 pseudogene 2 O - 20121230 -9606 171482 FAM9A - TEX39A HGNC:18403|MIM:300477|Ensembl:ENSG00000183304|HPRD:06506|Vega:OTTHUMG00000021110 X Xp22.32 family with sequence similarity 9, member A protein-coding FAM9A family with sequence similarity 9, member A O protein FAM9A|testis expressed 39A 20121230 -9606 171483 FAM9B - TEX39B HGNC:18404|MIM:300478|Ensembl:ENSG00000177138|HPRD:06566|HPRD:15955|Vega:OTTHUMG00000021114 X Xp22.32 family with sequence similarity 9, member B protein-coding FAM9B family with sequence similarity 9, member B O protein FAM9B|testis expressed 39B 20121230 -9606 171484 FAM9C - TEX39C HGNC:18405|MIM:300479|Ensembl:ENSG00000187268|HPRD:06507|Vega:OTTHUMG00000021143 X Xp22.2 family with sequence similarity 9, member C protein-coding FAM9C family with sequence similarity 9, member C O protein FAM9C|testis expressed 39C 20121230 -9606 171489 SPANXE - SPANX-E HGNC:18408|MIM:300671|HPRD:06723 X Xq27.2 SPANX family, member E protein-coding SPANXE SPANX family, member E O nuclear-associated protein SPAN-Xe|sperm protein associated with the nucleus on the X chromosome E|sperm protein associated with the nucleus, X chromosome, family member E 20121114 -9606 171490 SPANXF1 - - HGNC:18409 X Xq27.1 SPANX family, member F1 protein-coding SPANXF1 SPANX family, member F1 O CT11.2|SPAN-Xf|SPANX family member B/F|SPANX-F|cancer/testis antigen 11.2|nuclear-associated protein SPAN-Xb|nuclear-associated protein SPAN-Xf|sperm protein associated with the nucleus on the X chromosome B/F 20120728 -9606 171491 SPANXF2 - - HGNC:18447 X Xq27.1 SPANX family, member F2 protein-coding SPANXF2 SPANX family, member F2 O - 20080828 -9606 171511 CAQ5 - - MIM:606770 5 - Circulating adiponectin QTL on chromosome 5 unknown - - - - 20120622 -9606 171512 CAQ14 - - MIM:606771 14 - Circulating adiponectin QTL on chromosome 14 unknown - - - - 20120622 -9606 171513 PAOD1 - - MIM:606787 1 1p31 Peripheral arterial occlusive disease 1 unknown - - - - 20120622 -9606 171514 ANON1 - - MIM:606788 1 1p Anorexia nervosa, susceptibility to, 1 unknown - - - - 20120622 -9606 171515 FHQTL - - MIM:606789 8 8q Fetal hemoglobin QTL on chromosome 8 unknown - - - - 20121104 -9606 171523 CYP2T2P - - HGNC:18852 19 19q13.2 cytochrome P450, family 2, subfamily T, polypeptide 2, pseudogene pseudo CYP2T2P cytochrome P450, family 2, subfamily T, polypeptide 2, pseudogene O - 20121230 -9606 171546 SPTSSA - C14orf147|SSSPTA HGNC:20361|MIM:613540|Ensembl:ENSG00000165389|HPRD:16610|Vega:OTTHUMG00000140212 14 14q13.1 serine palmitoyltransferase, small subunit A protein-coding SPTSSA serine palmitoyltransferase, small subunit A O serine palmitoyltransferase small subunit A|small subunit of serine palmitoyltransferase A 20121230 -9606 171558 PTCRA RP3-475N16.3 PT-ALPHA|PTA HGNC:21290|MIM:606817|Ensembl:ENSG00000171611|HPRD:08435|Vega:OTTHUMG00000014709 6 6p21.3 pre T-cell antigen receptor alpha protein-coding PTCRA pre T-cell antigen receptor alpha O pT-alpha-TCR|pre-T-cell receptor alpha chain 20121230 -9606 171559 HMGA1P2 - HMGA1L2|HMGIYL2 HGNC:13322 4 4q13.3 high mobility group AT-hook 1 pseudogene 2 pseudo HMGA1P2 high mobility group AT-hook 1 pseudogene 2 O - 20121230 -9606 171560 AF357530 - - - 4 4q21.1 thioredoxin pseudogene pseudo - - - - 20121230 -9606 171568 POLR3H RP3-347H13.9 RPC22.9|RPC8 HGNC:30349|Ensembl:ENSG00000100413|HPRD:15157|Vega:OTTHUMG00000150971 22 22q13.2 polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein-coding POLR3H polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) O DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide|DNA-directed RNA polymerase III subunit H|DNA-directed RNA polymerase III subunit RPC8|RNA nucleotidyltransferase (DNA-directed)|RNA polymerase III subunit 22.9 kDa subunit|RNA polymerase III subunit C8|RNA polymerase III subunit RPC8 20121230 -9606 171586 ABHD3 - LABH3 HGNC:18718|MIM:612197|Ensembl:ENSG00000158201|HPRD:12405|Vega:OTTHUMG00000179099 18 18q11.2 abhydrolase domain containing 3 protein-coding ABHD3 abhydrolase domain containing 3 O abhydrolase domain-containing protein 3|alpha/beta hydrolase domain containing protein 3|lung alpha/beta hydrolase 3 20121230 -9606 191585 PLAC4 PP1416 C21orf115|PRED78 HGNC:14616|MIM:613770 21 21q22.2 placenta-specific 4 protein-coding PLAC4 placenta-specific 4 O placenta-specific protein 4 20121230 -9606 192111 PGAM5 - BXLBV68 HGNC:28763|MIM:614939|Ensembl:ENSG00000247077|HPRD:14681|Vega:OTTHUMG00000168021 12 12q24.33 phosphoglycerate mutase family member 5 protein-coding PGAM5 phosphoglycerate mutase family member 5 O Bcl-XL-binding protein v68|serine/threonine-protein phosphatase PGAM5, mitochondrial 20121230 -9606 192115 MA - MGAU|MGR1 MIM:157300 4 4q24 Migraine with aura, susceptibility to unknown - - - - 20120622 -9606 192127 SLC20A1P1 - - HGNC:20051 14 14q32.33 solute carrier family 20 (phosphate transporter), member 1 pseudogene 1 pseudo SLC20A1P1 solute carrier family 20 (phosphate transporter), member 1 pseudogene 1 O - 20121230 -9606 192128 SLC20A1P2 - - HGNC:42539 14 14q32.33 solute carrier family 20 (phosphate transporter), member 1 pseudogene 2 pseudo SLC20A1P2 solute carrier family 20 (phosphate transporter), member 1 pseudogene 2 O - 20121230 -9606 192130 GOLGA4P3 - - HGNC:43786 14 14q32.33 golgin A4 pseudogene 3 pseudo GOLGA4P3 golgin A4 pseudogene 3 O - 20121230 -9606 192131 GOLGA4P1 - - HGNC:18660 14 14q32.33 golgin A4 pseudogene 1 pseudo GOLGA4P1 golgin A4 pseudogene 1 O - 20121230 -9606 192132 GOLGA4P2 - - HGNC:20727 14 14q32.33 golgin A4 pseudogene 2 pseudo GOLGA4P2 golgin A4 pseudogene 2 O - 20121230 -9606 192133 RPS8P1 - RPS8_5_1417 HGNC:19789 14 14q32.33 ribosomal protein S8 pseudogene 1 pseudo RPS8P1 ribosomal protein S8 pseudogene 1 O - 20121230 -9606 192134 B3GNT6 - B3Gn-T6|IMAGE:4907098 HGNC:24141|Ensembl:ENSG00000198488|HPRD:16534|Vega:OTTHUMG00000165221 11 11q13.4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase) protein-coding B3GNT6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase) O BGnT-6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6|beta-1,3-Gn-T6|beta-1,3-N-acetylglucosaminyltransferase 6|beta-1,3-N-acetylglucosaminyltransferase protein|beta3Gn-T6|core 3 synthase 20121230 -9606 192142 RLS - - MIM:102300 12 12q12-q21 Restless legs syndrome, susceptibility to unknown - - - - 20120622 -9606 192143 STQTL2 - - MIM:606256 7 7q31.3 stature quantitative trait locus 2 unknown - - - - 20120622 -9606 192144 HDLCQ1 - HDLC1 HGNC:30996|MIM:606613 9 9p high density lipoprotein cholesterol level QTL 1 unknown HDLCQ1 high density lipoprotein cholesterol level QTL 1 O - 20120622 -9606 192146 DDX50P1 - RH-II/GuBp1 HGNC:18974 2 2p22.3 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 1 pseudo DDX50P1 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 1 O - 20121230 -9606 192149 BMIQ2 - - HGNC:23828|MIM:606643 13 13q14 body mass index QTL 2 unknown BMIQ2 body mass index QTL 2 O - 20120622 -9606 192217 OXCT2P1 - OXCT2P HGNC:21627 1 1p34.3 3-oxoacid CoA transferase 2 pseudogene 1 pseudo OXCT2P1 3-oxoacid CoA transferase 2 pseudogene 1 O - 20121230 -9606 192221 TLR7-like - - - X Xp22.3 toll-like receptor 7-like pseudo - - - - 20121230 -9606 192286 HIGD2A - - HGNC:28311|Ensembl:ENSG00000146066|HPRD:14483|Vega:OTTHUMG00000130657 5 5q35.2 HIG1 hypoxia inducible domain family, member 2A protein-coding HIGD2A HIG1 hypoxia inducible domain family, member 2A O HIG1 domain family member 2A|HIG1 domain family, member 2A 20121230 -9606 192343 NEWENTRY - - - - - Record to support submission of GeneRIFs for a gene not in Gene (human; man). other - - - - 20121222 -9606 192644 DFNA21 - - HGNC:2794|MIM:607017 6 6p24.1-p22.3 deafness, autosomal dominant 21 unknown DFNA21 deafness, autosomal dominant 21 O - 20120622 -9606 192666 KRT24 - K24|KA24 HGNC:18527|MIM:607742|Ensembl:ENSG00000167916|HPRD:09668|Vega:OTTHUMG00000133372 17 17q21.2 keratin 24 protein-coding KRT24 keratin 24 O CK-24|cytokeratin-24|keratin, type I cytoskeletal 24|keratin-24|type I keratin-24 20121230 -9606 192668 CYS1 - - HGNC:18525|Ensembl:ENSG00000205795|HPRD:18744|Vega:OTTHUMG00000151703 2 2p25.1 cystin 1 protein-coding CYS1 cystin 1 O cilia-associated protein|cystin-1 20121230 -9606 192669 EIF2C3 RP4-789D17.2 AGO3 HGNC:18421|MIM:607355|Ensembl:ENSG00000126070|HPRD:09558|Vega:OTTHUMG00000007533 1 1p34 eukaryotic translation initiation factor 2C, 3 protein-coding EIF2C3 eukaryotic translation initiation factor 2C, 3 O argonaute 3|argonaute3|eIF-2C 3|eIF2C 3|hAgo3|protein argonaute-3 20121230 -9606 192670 EIF2C4 - AGO4 HGNC:18424|MIM:607356|Ensembl:ENSG00000134698|HPRD:09559|Vega:OTTHUMG00000004243 1 1p34 eukaryotic translation initiation factor 2C, 4 protein-coding EIF2C4 eukaryotic translation initiation factor 2C, 4 O argonaute 4|argonaute4|eIF-2C 4|eIF2C 4|hAgo4|protein argonaute-4 20121230 -9606 192676 DFNA43 - - HGNC:17243|MIM:608394 2 2p12-p11.1 deafness, autosomal dominant 43 unknown DFNA43 deafness, autosomal dominant 43 O - 20120622 -9606 192677 SLEN1 - - HGNC:18542|MIM:607965 10 10q22.3 systemic lupus erythematosus with nephritis 1 unknown SLEN1 systemic lupus erythematosus with nephritis 1 O - 20120622 -9606 192679 SLEN2 - - HGNC:18543|MIM:607966 2 2q34-q35 systemic lupus erythematosus with nephritis 2 unknown SLEN2 systemic lupus erythematosus with nephritis 2 O - 20120622 -9606 192683 SCAMP5 - - HGNC:30386|MIM:613766|Ensembl:ENSG00000198794|HPRD:18020|Vega:OTTHUMG00000172704 15 15q24.2 secretory carrier membrane protein 5 protein-coding SCAMP5 secretory carrier membrane protein 5 O hSCAMP5|secretory carrier-associated membrane protein 5 20121230 -9606 193629 LINC00189 - C21orf109|NCRNA00189 HGNC:18461 21 21q22.11 long intergenic non-protein coding RNA 189 miscRNA LINC00189 long intergenic non-protein coding RNA 189 O - 20121230 -9606 195814 SDR16C5 - RDH#2|RDH-E2|RDHE2 HGNC:30311|MIM:608989|Ensembl:ENSG00000170786|HPRD:12351|Vega:OTTHUMG00000164311 8 8q12.1 short chain dehydrogenase/reductase family 16C, member 5 protein-coding SDR16C5 short chain dehydrogenase/reductase family 16C, member 5 O EPHD-2|epidermal retinal dehydrogenase 2|epidermal retinol dehydrogenase 2|retSDR2|retinal short chain dehydrogenase reductase|retinal short-chain dehydrogenase reductase 2|short-chain dehydrogenase/reductase family 16C member 5 20121230 -9606 195827 AAED1 RP11-392G7.2 C9orf21 HGNC:16881|Ensembl:ENSG00000158122|HPRD:18571|Vega:OTTHUMG00000020299 9 9q22.32 AhpC/TSA antioxidant enzyme domain containing 1 protein-coding AAED1 AhpC/TSA antioxidant enzyme domain containing 1 O UPF0308 protein C9orf21 20121230 -9606 195828 ZNF367 RP11-172F4.6 CDC14B|ZFF29 HGNC:18320|MIM:610160|Ensembl:ENSG00000165244|HPRD:18330|Vega:OTTHUMG00000020295 9 9q22|9q22.32 zinc finger protein 367 protein-coding ZNF367 zinc finger protein 367 O C2H2 zinc finger protein ZFF29|C2H2 zinc finger protein ZFF29a|CDC14 cell division cycle 14 homolog B 20121230 -9606 195977 ANTXRL - - HGNC:27277 10 10q11.22 anthrax toxin receptor-like pseudo ANTXRL anthrax toxin receptor-like O - 20121230 -9606 196047 EMX2OS - EMX2-AS1|NCRNA00045 HGNC:18511|MIM:607637 10 10q26.1 EMX2 opposite strand/antisense RNA miscRNA EMX2OS EMX2 opposite strand/antisense RNA O - 20121230 -9606 196051 PPAPDC1A RP11-257O17.1 DPPL2|PPAPDC1 HGNC:23531|Ensembl:ENSG00000203805|HPRD:18745|Vega:OTTHUMG00000019168 10 10q26.12 phosphatidic acid phosphatase type 2 domain containing 1A protein-coding PPAPDC1A phosphatidic acid phosphatase type 2 domain containing 1A O diacylglycerol pyrophosphate like 2|phosphatidate phosphatase PPAPDC1A|phosphatidic acid phosphatase type 2 domain-containing protein 1A 20121230 -9606 196074 METTL15 - METT5D1 HGNC:26606|Ensembl:ENSG00000169519|HPRD:08750|Vega:OTTHUMG00000150448 11 11p14.1 methyltransferase like 15 protein-coding METTL15 methyltransferase like 15 O methyltransferase 5 domain containing 1|methyltransferase 5 domain-containing protein 1|probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1|probable methyltransferase-like protein 15|putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 20121230 -9606 196120 SSU72P5 - - HGNC:43624 11 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 5 pseudo SSU72P5 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 5 O - 20121230 -9606 196188 RPS2P38 - RPS2_18_1126 HGNC:36584 11 11p14.3 ribosomal protein S2 pseudogene 38 pseudo RPS2P38 ribosomal protein S2 pseudogene 38 O - 20121230 -9606 196264 MPZL3 UNQ2966/PRO7425 - HGNC:27279|MIM:611707|Ensembl:ENSG00000160588|HPRD:14114|Vega:OTTHUMG00000166966 11 11q23.3 myelin protein zero-like 3 protein-coding MPZL3 myelin protein zero-like 3 O myelin protein zero-like protein 3 20121230 -9606 196294 IMMP1L - IMP1|IMP1-LIKE HGNC:26317|MIM:612323|Ensembl:ENSG00000148950|HPRD:08048|Vega:OTTHUMG00000166226 11 11p13 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) protein-coding IMMP1L IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) O mitochondrial inner membrane protease subunit 1 20121230 -9606 196335 OR56B4 - OR11-67 HGNC:15248|Ensembl:ENSG00000180919|HPRD:15027|Vega:OTTHUMG00000165531 11 11p15.4 olfactory receptor, family 56, subfamily B, member 4 protein-coding OR56B4 olfactory receptor, family 56, subfamily B, member 4 O olfactory receptor 56B4|olfactory receptor OR11-67 20121230 -9606 196374 KRT78 - K5B|Kb40 HGNC:28926|MIM:611159|Ensembl:ENSG00000170423|HPRD:17171|Vega:OTTHUMG00000169880 12 12q13.13 keratin 78 protein-coding KRT78 keratin 78 O CK-78|K78|cytokeratin-78|keratin 5b|keratin, type II cytoskeletal 78|keratin-5b|keratin-78|type-II keratin Kb40 20121230 -9606 196383 RILPL2 - RLP2 HGNC:28787|MIM:614093|Ensembl:ENSG00000150977|HPRD:10084 12 12q24.31 Rab interacting lysosomal protein-like 2 protein-coding RILPL2 Rab interacting lysosomal protein-like 2 O RILP-like protein 2|p40phox-binding protein|rab-interacting lysosomal protein-like 2 20121230 -9606 196385 DNAH10 hCG_1811879 - HGNC:2941|MIM:605884|Ensembl:ENSG00000197653|HPRD:13473|HPRD:13477|Vega:OTTHUMG00000154477 12 12q24.31 dynein, axonemal, heavy chain 10 protein-coding DNAH10 dynein, axonemal, heavy chain 10 O axonemal beta dynein heavy chain 10|ciliary dynein heavy chain 10|dynein heavy chain 10, axonemal|dynein, axonemal, heavy polypeptide 10 20121230 -9606 196394 AMN1 - - HGNC:27281|Ensembl:ENSG00000151743|HPRD:14115|Vega:OTTHUMG00000169192 12 12p11.21 antagonist of mitotic exit network 1 homolog (S. cerevisiae) protein-coding AMN1 antagonist of mitotic exit network 1 homolog (S. cerevisiae) O protein AMN1 homolog 20121230 -9606 196403 DTX3 - RNF154 HGNC:24457|MIM:613142|Ensembl:ENSG00000178498|HPRD:16842|Vega:OTTHUMG00000170189 12 12q13.3 deltex homolog 3 (Drosophila) protein-coding DTX3 deltex homolog 3 (Drosophila) O RING finger protein 154|deltex 3 homolog|deltex3|probable E3 ubiquitin-protein ligase DTX3|protein deltex-3 20121230 -9606 196410 METTL7B UNQ594/PRO1180 ALDI HGNC:28276|Ensembl:ENSG00000170439|HPRD:14458|Vega:OTTHUMG00000152665 12 12q13.2 methyltransferase like 7B protein-coding METTL7B methyltransferase like 7B O associated with lipid droplets 1|methyltransferase-like protein 7B 20121230 -9606 196415 C12orf77 - - HGNC:27282|Ensembl:ENSG00000226397|Vega:OTTHUMG00000170185 12 12p12.1 chromosome 12 open reading frame 77 protein-coding C12orf77 chromosome 12 open reading frame 77 O putative uncharacterized protein C12orf77 20121230 -9606 196441 ZFC3H1 - CCDC131|PSRC2 HGNC:28328|Ensembl:ENSG00000133858|HPRD:14489|Vega:OTTHUMG00000169545 12 12q21.1 zinc finger, C3H1-type containing protein-coding ZFC3H1 zinc finger, C3H1-type containing O coiled-coil domain containing 131|coiled-coil domain-containing protein 131|proline/serine-rich coiled-coil 2|proline/serine-rich coiled-coil protein 2|zinc finger C3H1 domain-containing protein 20121230 -9606 196446 MYRFL - C12orf15|C12orf28|bcm1377 HGNC:26316|Ensembl:ENSG00000166268|HPRD:08047|Vega:OTTHUMG00000169438 12 12q15 myelin regulatory factor-like protein-coding MYRFL myelin regulatory factor-like O uncharacterized protein C12orf28 20121230 -9606 196463 PLBD2 - P76 HGNC:27283|Ensembl:ENSG00000151176|HPRD:14116|Vega:OTTHUMG00000169567 12 12q24.13 phospholipase B domain containing 2 protein-coding PLBD2 phospholipase B domain containing 2 O 76 kDa protein|LAMA-like protein 2|PLB homolog 2|lamina ancestor homolog 2|mannose-6-phosphate protein associated protein p76|phospholipase B domain-containing protein 2|phospholipase B-like 2 32 kDa form|phospholipase B-like 2 45 kDa form|putative phospholipase B-like 2 20121230 -9606 196469 LOC196469 - - - 12 12q23.3 DNA dC->dU-editing enzyme APOBEC-3G-like pseudo - - - - 20121230 -9606 196472 FAM71C - - HGNC:28594|Ensembl:ENSG00000180219|HPRD:17539|Vega:OTTHUMG00000170311 12 12q23.1 family with sequence similarity 71, member C protein-coding FAM71C family with sequence similarity 71, member C O protein FAM71C 20121230 -9606 196475 RMST - LINC00054|NCRMS|NCRNA00054 HGNC:29893|MIM:607045 12 12q23.1|12q21 rhabdomyosarcoma 2 associated transcript (non-protein coding) miscRNA RMST rhabdomyosarcoma 2 associated transcript (non-protein coding) O - 20121230 -9606 196477 CCER1 - C12orf12 HGNC:28373|Ensembl:ENSG00000197651|HPRD:14505|Vega:OTTHUMG00000170070 12 12q21.33 coiled-coil glutamate-rich protein 1 protein-coding CCER1 coiled-coil glutamate-rich protein 1 O coiled-coil domain-containing glutamate-rich protein 1 20121230 -9606 196483 FAM86A SB153 - HGNC:32221|Ensembl:ENSG00000118894|HPRD:18018|Vega:OTTHUMG00000129527 16 16p13.3 family with sequence similarity 86, member A protein-coding FAM86A family with sequence similarity 86, member A O protein FAM86A 20121230 -9606 196500 PIANP UNQ828/PRO1755 C12orf53|PANP HGNC:25338|Ensembl:ENSG00000139200|HPRD:13205|Vega:OTTHUMG00000168664 12 12p13.31 PILR alpha associated neural protein protein-coding PIANP PILR alpha associated neural protein O PILR alpha-associated neural protein|PILR-associating neural protein|paired immunoglobin-like type 2 receptor-associating neural protein 20121230 -9606 196513 DCP1B - DCP1|hDcp1b HGNC:24451|MIM:609843|Ensembl:ENSG00000151065|Vega:OTTHUMG00000168113 12 12p13.33 DCP1 decapping enzyme homolog B (S. cerevisiae) protein-coding DCP1B DCP1 decapping enzyme homolog B (S. cerevisiae) O decapping enzyme hDcp1b|mRNA-decapping enzyme 1B 20121230 -9606 196527 ANO6 - BDPLT7|SCTS|TMEM16F HGNC:25240|MIM:608663|Ensembl:ENSG00000177119|HPRD:18746|Vega:OTTHUMG00000169564 12 12q12 anoctamin 6 protein-coding ANO6 anoctamin 6 O anoctamin-6|transmembrane protein 16F 20121230 -9606 196528 ARID2 - BAF200|p200 HGNC:18037|MIM:609539|Ensembl:ENSG00000189079|HPRD:16505|Vega:OTTHUMG00000150487 12 12q12 AT rich interactive domain 2 (ARID, RFX-like) protein-coding ARID2 AT rich interactive domain 2 (ARID, RFX-like) O ARID domain-containing protein 2|AT-rich interactive domain-containing protein 2|BRG1-associated factor 200|zinc finger protein with activation potential|zipzap|zipzap/p200 20121230 -9606 196541 METTL21C - C13orf39 HGNC:33717|Ensembl:ENSG00000139780|HPRD:17315|Vega:OTTHUMG00000017304 13 13q33.1 methyltransferase like 21C protein-coding METTL21C methyltransferase like 21C O methyltransferase-like protein 21C 20121230 -9606 196549 EEF1DP3 - - HGNC:30486|HPRD:08314 13 13q13.1 eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 O - 20121230 -9606 196740 VSTM4 - C10orf72 HGNC:26470|Ensembl:ENSG00000165633|HPRD:08503|Vega:OTTHUMG00000018184 10 10q11.23 V-set and transmembrane domain containing 4 protein-coding VSTM4 V-set and transmembrane domain containing 4 O V-set and transmembrane domain-containing protein 4 20121230 -9606 196743 PAOX RP11-122K13.11-002 PAO HGNC:20837|Ensembl:ENSG00000148832|HPRD:10136|Vega:OTTHUMG00000019318 10 10q26.3 polyamine oxidase (exo-N4-amino) protein-coding PAOX polyamine oxidase (exo-N4-amino) O peroxisomal N(1)-acetyl-spermine/spermidine oxidase|peroxisomal N1-acetyl-spermine/spermidine oxidase 20121230 -9606 196792 FAM24B - - HGNC:23475|Ensembl:ENSG00000213185|HPRD:13299|Vega:OTTHUMG00000019194 10 10q26.13 family with sequence similarity 24, member B protein-coding FAM24B family with sequence similarity 24, member B O protein FAM24B 20121230 -9606 196872 LINC00638 - - HGNC:28325 14 14q32.33 long intergenic non-protein coding RNA 638 miscRNA LINC00638 long intergenic non-protein coding RNA 638 O - 20121230 -9606 196883 ADCY4 - AC4 HGNC:235|MIM:600292|Ensembl:ENSG00000129467|HPRD:11614|Vega:OTTHUMG00000029347 14 14q12 adenylate cyclase 4 protein-coding ADCY4 adenylate cyclase 4 O ATP pyrophosphate-lyase 4|adenylate cyclase type 4|adenylate cyclase type IV|adenylyl cyclase 4 20121230 -9606 196913 C14orf183 - - HGNC:27285|Ensembl:ENSG00000168260|HPRD:18572|Vega:OTTHUMG00000170858 14 14q21.3 chromosome 14 open reading frame 183 protein-coding C14orf183 chromosome 14 open reading frame 183 O putative uncharacterized protein C14orf183 20121230 -9606 196951 FAM227B - C15orf33 HGNC:26543|Ensembl:ENSG00000166262|HPRD:08139|Vega:OTTHUMG00000172328 15 15q21.2 family with sequence similarity 227, member B protein-coding FAM227B family with sequence similarity 227, member B O protein FAM227B 20121230 -9606 196968 DNM1P46 - C15orf51|DNM1DN14.2|DNM1DN14@ HGNC:35199|HPRD:13192 15 15q26.3 DNM1 pseudogene 46 pseudo DNM1P46 DNM1 pseudogene 46 O - 20121230 -9606 196993 CT62 - - HGNC:27286|Ensembl:ENSG00000225362|Vega:OTTHUMG00000172836 15 15q23 cancer/testis antigen 62 protein-coding CT62 cancer/testis antigen 62 O - 20121230 -9606 196996 GRAMD2 - - HGNC:27287|Ensembl:ENSG00000175318|HPRD:13161|Vega:OTTHUMG00000172708 15 15q23 GRAM domain containing 2 protein-coding GRAMD2 GRAM domain containing 2 O GRAM domain-containing protein 2 20121230 -9606 197003 MGC15885 - - - 15 15q22.2 uncharacterized protein MGC15885 miscRNA - - - - 20121230 -9606 197021 LCTL UNQ3022/PRO9820 KLG|KLPH HGNC:15583|Ensembl:ENSG00000188501|HPRD:13930|Vega:OTTHUMG00000133207 15 15q22.31 lactase-like protein-coding LCTL lactase-like O KL lactase phlorizin hydrolase|klotho gamma|klotho/lactase-phlorizin hydrolase-related protein|lactase-like protein 20121230 -9606 197131 UBR1 - JBS HGNC:16808|MIM:605981|Ensembl:ENSG00000159459|HPRD:09342|Vega:OTTHUMG00000130702 15 15q13 ubiquitin protein ligase E3 component n-recognin 1 protein-coding UBR1 ubiquitin protein ligase E3 component n-recognin 1 O E3 ubiquitin-protein ligase UBR1|E3a ligase|N-recognin-1|ubiquitin ligase E3 alpha-I|ubiquitin-protein ligase E3-alpha|ubiquitin-protein ligase E3-alpha-1|ubiquitin-protein ligase E3-alpha-I 20121230 -9606 197135 PATL2 - Pat1a|hPat1a HGNC:33630|MIM:614661|Ensembl:ENSG00000229474|Vega:OTTHUMG00000171932 15 15q21.1 protein associated with topoisomerase II homolog 2 (yeast) protein-coding PATL2 protein associated with topoisomerase II homolog 2 (yeast) O PAT1-like protein 2|protein PAT1 homolog 2|protein PAT1 homolog a 20121230 -9606 197187 SNAI3-AS1 - - HGNC:28327 16 16q24.3 SNAI3 antisense RNA 1 miscRNA SNAI3-AS1 SNAI3 antisense RNA 1 O - 20121230 -9606 197196 LINC00311 - NCRNA00311|TMEM148 HGNC:28312|HPRD:14484 16 16q24.1 long intergenic non-protein coding RNA 311 miscRNA LINC00311 long intergenic non-protein coding RNA 311 O - 20121230 -9606 197257 LDHD - DLD HGNC:19708|MIM:607490|Ensembl:ENSG00000166816|HPRD:06318|Vega:OTTHUMG00000137605 16 16q23.1 lactate dehydrogenase D protein-coding LDHD lactate dehydrogenase D O D-lactate dehydrogenase|probable D-lactate dehydrogenase, mitochondrial 20121230 -9606 197258 FUK UNQ5838 1110046B12Rik HGNC:29500|MIM:608675|Ensembl:ENSG00000157353|HPRD:16365|Vega:OTTHUMG00000074085 16 16q22.1 fucokinase protein-coding FUK fucokinase O L-fucose kinase 20121230 -9606 197259 MLKL - - HGNC:26617|Ensembl:ENSG00000168404|HPRD:08752|Vega:OTTHUMG00000177356 16 16q23.1 mixed lineage kinase domain-like protein-coding MLKL mixed lineage kinase domain-like O mixed lineage kinase domain-like protein 20121230 -9606 197320 ZNF778 hCG_2039013 - HGNC:26479|Ensembl:ENSG00000170100|HPRD:08111|Vega:OTTHUMG00000175526 16 16q24.3 zinc finger protein 778 protein-coding ZNF778 zinc finger protein 778 O - 20121230 -9606 197322 ACSF3 PSEC0197 - HGNC:27288|MIM:614245|Ensembl:ENSG00000176715|HPRD:14117|Vega:OTTHUMG00000138044 16 16q24.3 acyl-CoA synthetase family member 3 protein-coding ACSF3 acyl-CoA synthetase family member 3 O acyl-CoA synthetase family member 3, mitochondrial 20121230 -9606 197331 LOC197331 - - - 16 16q24.3 HSA16q24 beta-tubulin 4Q pseudogene pseudo - - - - 20121230 -9606 197335 WDR90 - C16orf15|C16orf16|C16orf17|C16orf18|C16orf19 HGNC:26960|Ensembl:ENSG00000161996|HPRD:08311|HPRD:14118|Vega:OTTHUMG00000048040 16 16p13.3 WD repeat domain 90 protein-coding WDR90 WD repeat domain 90 O WD repeat-containing protein 90 20121230 -9606 197342 EME2 - SLX2B|gs125 HGNC:27289|MIM:610886|Ensembl:ENSG00000197774|HPRD:16859|Vega:OTTHUMG00000176706 16 16p13.3 essential meiotic endonuclease 1 homolog 2 (S. pombe) protein-coding EME2 essential meiotic endonuclease 1 homolog 2 (S. pombe) O SLX2 structure-specific endonuclease subunit homolog B|homolog of yeast EME1 endonuclease 2|probable crossover junction endonuclease EME2 20121230 -9606 197350 CASP16 - CASP14L HGNC:27290|Ensembl:ENSG00000228146|Vega:OTTHUMG00000177520 16 16p13.3 caspase 16, apoptosis-related cysteine peptidase (putative) protein-coding CASP16 caspase 16, apoptosis-related cysteine peptidase (putative) O putative caspase-14-like protein|putative caspase-16 20121230 -9606 197358 NLRC3 - CLR16.2|NOD3 HGNC:29889|Ensembl:ENSG00000167984|HPRD:17639|Vega:OTTHUMG00000177561 16 16p13.3 NLR family, CARD domain containing 3 protein-coding NLRC3 NLR family, CARD domain containing 3 O CARD15-like protein|NOD-like receptor C3|caterpiller 16.2|caterpiller protein 16.2|nucleotide-binding oligomerization domain protein 3|nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 3|protein NLRC3 20121230 -9606 197370 NSMCE1 HSPC333 NSE1 HGNC:29897|Ensembl:ENSG00000169189|HPRD:17648|Vega:OTTHUMG00000131674 16 16p12.1 non-SMC element 1 homolog (S. cerevisiae) protein-coding NSMCE1 non-SMC element 1 homolog (S. cerevisiae) O non-structural maintenance of chromosomes element 1 homolog 20121230 -9606 197387 LOC197387 - - - 16 16p11.1 uncharacterized LOC197387 protein-coding - - - - 20111025 -9606 197407 ZNF48 - ZNF553 HGNC:13114|Ensembl:ENSG00000180035|HPRD:15836|Vega:OTTHUMG00000048195 16 16p11.2 zinc finger protein 48 protein-coding ZNF48 zinc finger protein 48 O zinc finger protein 553 20121230 -9606 198437 C20orf201 - - HGNC:33718|Ensembl:ENSG00000171695|HPRD:17317|Vega:OTTHUMG00000033021 20 20q13.33 chromosome 20 open reading frame 201 protein-coding C20orf201 chromosome 20 open reading frame 201 O bA299N6.3|uncharacterized protein C20orf201 20121230 -9606 199221 DZIP1L - DZIP2 HGNC:26551|Ensembl:ENSG00000158163|HPRD:08145|Vega:OTTHUMG00000159819 3 3q22.3 DAZ interacting protein 1-like protein-coding DZIP1L DAZ interacting protein 1-like O DAZ-interacting protein 1-like protein|zinc finger protein DZIP1L 20121230 -9606 199223 TTC21A - STI2 HGNC:30761|MIM:611430|Ensembl:ENSG00000168026|HPRD:10254|Vega:OTTHUMG00000155973 3 3p22.2 tetratricopeptide repeat domain 21A protein-coding TTC21A tetratricopeptide repeat domain 21A O TPR domain containing STI2|TPR repeat protein 21A|stress-inducible protein 2|tetratricopeptide repeat protein 21A 20121230 -9606 199675 C19orf59 - MCEMP1 HGNC:27291|MIM:609565|Ensembl:ENSG00000183019|HPRD:14119 19 19p13.2 chromosome 19 open reading frame 59 protein-coding C19orf59 chromosome 19 open reading frame 59 O mast cell-expressed membrane protein 1 20121230 -9606 199692 ZNF627 - - HGNC:30570|MIM:612248|Ensembl:ENSG00000198551|HPRD:18360|Vega:OTTHUMG00000182035 19 19p13.2 zinc finger protein 627 protein-coding ZNF627 zinc finger protein 627 O - 20121230 -9606 199699 DAND5 - CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 HGNC:26780|MIM:609068|Ensembl:ENSG00000179284|HPRD:08788|Vega:OTTHUMG00000180725 19 19p13.2 DAN domain family, member 5 protein-coding DAND5 DAN domain family, member 5 O DAN domain family member 5|cerberus 2|cerberus-like 2|cerberus-like protein 2|cerl-2|cysteine knot superfamily 1, BMP antagonist 3|gremlin-3 20121230 -9606 199704 ZNF585A - - HGNC:26305|Ensembl:ENSG00000196967|HPRD:15862|Vega:OTTHUMG00000181857 19 19q13.12 zinc finger protein 585A protein-coding ZNF585A zinc finger protein 585A O - 20121230 -9606 199713 NLRP7 XXbac-BCX195L8.11-001 CLR19.4|HYDM|NALP7|NOD12|PAN7|PYPAF3 HGNC:22947|MIM:609661|Ensembl:ENSG00000167634|HPRD:10112|Vega:OTTHUMG00000180428 19 19q13.42 NLR family, pyrin domain containing 7 protein-coding NLRP7 NLR family, pyrin domain containing 7 O NACHT, LRR and PYD containing protein 7|NACHT, LRR and PYD domains-containing protein 7|NACHT, leucine rich repeat and PYD containing 7|PYRIN-containing Apaf1-like protein 3|nucleotide-binding oligomerization domain protein 12|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 7 20121230 -9606 199720 GGN - - HGNC:18869|MIM:609966|Ensembl:ENSG00000179168|HPRD:17036|Vega:OTTHUMG00000182080 19 19q13.2 gametogenetin protein-coding GGN gametogenetin O - 20121230 -9606 199731 CADM4 - IGSF4C|NECL4|Necl-4|TSLL2|synCAM4 HGNC:30825|MIM:609744|Ensembl:ENSG00000105767|HPRD:17141 19 19q13.31 cell adhesion molecule 4 protein-coding CADM4 cell adhesion molecule 4 O TSLC1-like 2|TSLC1-like protein 2|immunoglobulin superfamily member 4C|immunoglobulin superfamily, member 4C|nectin-like 4|nectin-like protein 4 20121230 -9606 199745 THAP8 - - HGNC:23191|MIM:612536|Ensembl:ENSG00000161277|HPRD:15501|Vega:OTTHUMG00000048138 19 19q13.12 THAP domain containing 8 protein-coding THAP8 THAP domain containing 8 O THAP domain-containing protein 8 20121230 -9606 199746 U2AF1L4 - U2AF1-RS3|U2AF1L3|U2AF1L3V1|U2AF1RS3|U2af26 HGNC:23020|MIM:601080|Ensembl:ENSG00000161265|HPRD:03050|Vega:OTTHUMG00000182066 19 19q13.12 U2 small nuclear RNA auxiliary factor 1-like 4 protein-coding U2AF1L4 U2 small nuclear RNA auxiliary factor 1-like 4 O U2 auxiliary factor 26|U2 small nuclear RNA auxiliary factor 1-like 3|U2 small nuclear RNA auxiliary factor 1-like protein 3|U2 small nuclear RNA auxiliary factor 1-like protein 4|U2(RNU2) small nuclear RNA auxiliary factor 1-like 3|U2(RNU2) small nuclear RNA auxiliary factor 1-like protein 3|U2AF1-like protein 3|splicing factor U2AF 26 kDa subunit 20121230 -9606 199777 ZNF626 - - HGNC:30461|Ensembl:ENSG00000188171|HPRD:15881|Vega:OTTHUMG00000179733 19 19p12 zinc finger protein 626 protein-coding ZNF626 zinc finger protein 626 O - 20121230 -9606 199786 FAM129C - BCNP1 HGNC:24130|MIM:609967|Ensembl:ENSG00000167483|HPRD:16546 19 19p13.11 family with sequence similarity 129, member C protein-coding FAM129C family with sequence similarity 129, member C O B-cell novel protein 1|niban-like protein 2 20121230 -9606 199800 ADM5 - AM5|C19orf76 HGNC:27293|Ensembl:ENSG00000224420 19 19q13.33 adrenomedullin 5 (putative) protein-coding ADM5 adrenomedullin 5 (putative) O adrenomedullin 5 homolog (pig)|putative adrenomedullin-5-like protein 20121230 -9606 199827 RNASEH1P3 - - HGNC:18716 1 1q32.2 ribonuclease H1 pseudogene 3 pseudo RNASEH1P3 ribonuclease H1 pseudogene 3 O - 20121230 -9606 199834 LCE4A - LEP8|SPRL4A HGNC:16613|MIM:612618|Ensembl:ENSG00000187170|HPRD:17264 1 1q21.3 late cornified envelope 4A protein-coding LCE4A late cornified envelope 4A O late cornified envelope protein 4A|late envelope protein 8|small proline rich-like (epidermal differentiation complex) 4A|small proline-rich-like epidermal differentiation complex protein 4A 20121230 -9606 199857 ALG14 - - HGNC:28287|MIM:612866|Ensembl:ENSG00000172339|HPRD:14466|Vega:OTTHUMG00000010781 1 1p21.3 asparagine-linked glycosylation 14 homolog (S. cerevisiae) protein-coding ALG14 asparagine-linked glycosylation 14 homolog (S. cerevisiae) O UDP-N-acetylglucosamine transferase subunit ALG14 homolog 20121230 -9606 199870 FAM76A RP3-426I6.1 - HGNC:28530|Ensembl:ENSG00000009780|HPRD:14583|Vega:OTTHUMG00000003729 1 1p35.3 family with sequence similarity 76, member A protein-coding FAM76A family with sequence similarity 76, member A O protein FAM76A 20121230 -9606 199882 LOC199882 RP11-353N4.5 - Vega:OTTHUMG00000013955 1 1q21.2 phosphodiesterase 4D interacting protein-like protein-coding - - - - 20111118 -9606 199897 LOC199897 - - - 1 1p31.3 uncharacterized LOC199897 protein-coding - - - - 20121102 -9606 199899 LINC00466 - - HGNC:27294 1 1p31.3 long intergenic non-protein coding RNA 466 miscRNA LINC00466 long intergenic non-protein coding RNA 466 O - 20121230 -9606 199900 MRPS21P1 - - HGNC:29748 1 1p31.3 mitochondrial ribosomal protein S21 pseudogene 1 pseudo MRPS21P1 mitochondrial ribosomal protein S21 pseudogene 1 O - 20121230 -9606 199920 C1orf168 RP4-758N20.2 - HGNC:27295|Ensembl:ENSG00000187889|HPRD:14120|Vega:OTTHUMG00000008281 1 1p32.2 chromosome 1 open reading frame 168 protein-coding C1orf168 chromosome 1 open reading frame 168 O uncharacterized protein C1orf168 20121230 -9606 199953 TMEM201 RP13-15M17.2 NET5 HGNC:33719|Ensembl:ENSG00000188807|HPRD:17991|Vega:OTTHUMG00000057457 1 1p36.22 transmembrane protein 201 protein-coding TMEM201 transmembrane protein 201 O spindle-associated membrane protein 1 20121230 -9606 199964 TMEM61 - - HGNC:27296|Ensembl:ENSG00000143001|HPRD:14121|Vega:OTTHUMG00000009991 1 1p32.3 transmembrane protein 61 protein-coding TMEM61 transmembrane protein 61 O - 20121230 -9606 199974 CYP4Z1 UNQ3060/PRO9882 CYP4A20 HGNC:20583|Ensembl:ENSG00000186160|HPRD:13111|Vega:OTTHUMG00000008019 1 1p33 cytochrome P450, family 4, subfamily Z, polypeptide 1 protein-coding CYP4Z1 cytochrome P450, family 4, subfamily Z, polypeptide 1 O CYPIVZ1|cytochrome P450 4Z1 20121230 -9606 199990 C1orf86 RP11-181G12.3 FAAP20|FP7162 HGNC:26428|Ensembl:ENSG00000162585|HPRD:08707|Vega:OTTHUMG00000001404 1 1p36.33 chromosome 1 open reading frame 86 protein-coding C1orf86 chromosome 1 open reading frame 86 O Fanconi anemia-associated protein of 20 kDa 20121230 -9606 200008 CDCP2 - - HGNC:27297|MIM:612320|Ensembl:ENSG00000157211|HPRD:14122|Vega:OTTHUMG00000155307 1 1p32.3 CUB domain containing protein 2 protein-coding CDCP2 CUB domain containing protein 2 O CUB domain-containing protein 2 20121230 -9606 200010 SLC5A9 - SGLT4 HGNC:22146|Ensembl:ENSG00000117834|HPRD:18060|Vega:OTTHUMG00000007959 1 1p33 solute carrier family 5 (sodium/glucose cotransporter), member 9 protein-coding SLC5A9 solute carrier family 5 (sodium/glucose cotransporter), member 9 O Na(+)/glucose cotransporter 4|hSGLT4|sodium/glucose cotransporter 4|solute carrier family 5 member 9 20121230 -9606 200014 CC2D1B RP11-155O18.2 - HGNC:29386|Ensembl:ENSG00000154222|HPRD:12393|Vega:OTTHUMG00000008102 1 1p32.3 coiled-coil and C2 domain containing 1B protein-coding CC2D1B coiled-coil and C2 domain containing 1B O FRE under dual repression-binding protein 2|coiled-coil and C2 domain-containing protein 1B|five prime repressor element under dual repression-binding protein 2|freud-2 20121230 -9606 200025 PFN1P3 - COAS-3|COAS3 HGNC:42987 1 1q21.2 profilin 1 pseudogene 3 pseudo PFN1P3 profilin 1 pseudogene 3 O - 20121230 -9606 200030 NBPF11 RP11-94I2.2 - HGNC:31993|MIM:614001|Ensembl:ENSG00000152042|HPRD:14123|Vega:OTTHUMG00000013880 1 1q21.1 neuroblastoma breakpoint family, member 11 protein-coding NBPF11 neuroblastoma breakpoint family, member 11 O neuroblastoma breakpoint family member 11 20121230 -9606 200035 NUDT17 - - HGNC:26618|Ensembl:ENSG00000186364|HPRD:18573|Vega:OTTHUMG00000013752 1 1q21.1 nudix (nucleoside diphosphate linked moiety X)-type motif 17 protein-coding NUDT17 nudix (nucleoside diphosphate linked moiety X)-type motif 17 O nucleoside diphosphate-linked moiety X motif 17|nudix motif 17 20121230 -9606 200058 FLJ23867 - - - 1 1q25.2 uncharacterized protein FLJ23867 miscRNA - - - - 20121230 -9606 200081 TXLNA - IL14|RP4-622L5.4|TXLN HGNC:30685|MIM:608676|Ensembl:ENSG00000084652|HPRD:09408|Vega:OTTHUMG00000004423 1 1p35.1 taxilin alpha protein-coding TXLNA taxilin alpha O alpha-taxilin|interleukin 14 20121230 -9606 200132 TCTEX1D1 - RP11-266I14.2 HGNC:26882|Ensembl:ENSG00000152760|HPRD:08287|Vega:OTTHUMG00000009162 1 1p31.3 Tctex1 domain containing 1 protein-coding TCTEX1D1 Tctex1 domain containing 1 O tctex1 domain-containing protein 1 20121230 -9606 200149 LOC200149 - - - 1 1q43 tubulin, beta 8 pseudogene pseudo - - - - 20121230 -9606 200150 PLD5 - PLDC HGNC:26879|Ensembl:ENSG00000180287|HPRD:08812|Vega:OTTHUMG00000039867 1 1q43 phospholipase D family, member 5 protein-coding PLD5 phospholipase D family, member 5 O inactive PLD 5|inactive choline phosphatase 5|inactive phosphatidylcholine-hydrolyzing phospholipase D5|inactive phospholipase D5 20121230 -9606 200159 C1orf100 RP11-518L10.1 - HGNC:30435|Ensembl:ENSG00000173728|HPRD:13168|Vega:OTTHUMG00000040104 1 1q44 chromosome 1 open reading frame 100 protein-coding C1orf100 chromosome 1 open reading frame 100 O uncharacterized protein C1orf100 20121230 -9606 200162 SPAG17 - PF6|RP4-776P7.2 HGNC:26620|Ensembl:ENSG00000155761|HPRD:10146|Vega:OTTHUMG00000012198 1 1p12 sperm associated antigen 17 protein-coding SPAG17 sperm associated antigen 17 O projection protein PF6 homolog|sperm-associated antigen 17 20121230 -9606 200172 SLFNL1 RP11-348A7.4 - HGNC:26313|Ensembl:ENSG00000171790|HPRD:08044|Vega:OTTHUMG00000005719 1 1p34.2 schlafen-like 1 protein-coding SLFNL1 schlafen-like 1 O schlafen-like protein 1 20121230 -9606 200185 KRTCAP2 - KCP2 HGNC:28942|Ensembl:ENSG00000163463|HPRD:17253|Vega:OTTHUMG00000013904 1 1q22 keratinocyte associated protein 2 protein-coding KRTCAP2 keratinocyte associated protein 2 O KCP-2|keratinocyte-associated protein 2|keratinocytes associated protein 2 20121230 -9606 200186 CRTC2 RP11-422P24.6 TORC-2|TORC2 HGNC:27301|MIM:608972|Ensembl:ENSG00000160741|HPRD:12347|Vega:OTTHUMG00000037156 1 1q21.3 CREB regulated transcription coactivator 2 protein-coding CRTC2 CREB regulated transcription coactivator 2 O CREB-regulated transcription coactivator 2|transducer of regulated cAMP response element-binding protein (CREB) 2 20121230 -9606 200197 C1orf126 - RP1-21O18.2 HGNC:26301|HPRD:08673 1 1p36.21 chromosome 1 open reading frame 126 miscRNA C1orf126 chromosome 1 open reading frame 126 O - 20121230 -9606 200205 IBA57 RP11-520H14.5 C1orf69 HGNC:27302|Ensembl:ENSG00000181873|HPRD:17318|Vega:OTTHUMG00000039769 1 1q42.13 IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae) protein-coding IBA57 IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae) O iron-sulfur cluster assembly factor for biotin synthase- and aconitase-like mitochondrial proteins, with a mass of 57kDa|iron-sulfur cluster assembly factor homolog|putative transferase C1orf69, mitochondrial|putative transferase CAF17, mitochondrial 20121230 -9606 200232 FAM209A RP5-1153D9.4 C20orf106|dJ1153D9.3 HGNC:16100|Ensembl:ENSG00000124103|HPRD:18536|Vega:OTTHUMG00000032799 20 20q13.31 family with sequence similarity 209, member A protein-coding FAM209A family with sequence similarity 209, member A O protein FAM209A|uncharacterized protein C20orf106 20121230 -9606 200261 LINC00656 - - HGNC:27304|HPRD:14124 20 20p11.21 long intergenic non-protein coding RNA 656 miscRNA LINC00656 long intergenic non-protein coding RNA 656 O - 20121230 -9606 200298 LINC00528 - C22orf37 HGNC:26875 22 22q11.21 long intergenic non-protein coding RNA 528 unknown LINC00528 long intergenic non-protein coding RNA 528 O - 20121230 -9606 200312 RNF215 - - HGNC:33434|Ensembl:ENSG00000099999|HPRD:18747|Vega:OTTHUMG00000151016 22 22q12.2 ring finger protein 215 protein-coding RNF215 ring finger protein 215 O RING finger protein 215 20121230 -9606 200315 APOBEC3A - ARP3|PHRBN|bK150C2.1 HGNC:17343|MIM:607109|Ensembl:ENSG00000128383|HPRD:06168|Vega:OTTHUMG00000151004 22 22q13.1-q13.2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A protein-coding APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A O phorbolin 1|phorbolin-1|probable DNA dC->dU-editing enzyme APOBEC-3A 20121230 -9606 200316 APOBEC3F CTA-150C2.19-001 ARP8|BK150C2.4.MRNA|KA6 HGNC:17356|MIM:608993|Ensembl:ENSG00000128394|HPRD:16415|Vega:OTTHUMG00000151080 22 22q13.1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F protein-coding APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F O DNA dC->dU-editing enzyme APOBEC-3F|apolipoprotein B mRNA editing enzyme cytidine deaminase|apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3F|induced upon T-cell activation 20121230 -9606 200350 FOXD4L1 - FOXD5|bA395L14.1 HGNC:18521|MIM:611084|Ensembl:ENSG00000184492|HPRD:17010|Vega:OTTHUMG00000131359 2 2q13 forkhead box D4-like 1 protein-coding FOXD4L1 forkhead box D4-like 1 O FOXD4-like 1|forkhead box D4 like 1|forkhead box protein D4-like 1 20121230 -9606 200373 PCDP1 hCG_17324 - Ensembl:ENSG00000163075|HPRD:18748|Vega:OTTHUMG00000153310 2 2q14.2 primary ciliary dyskinesia protein 1 protein-coding - - - - 20121230 -9606 200403 VWA3B - - HGNC:28385|Ensembl:ENSG00000168658|HPRD:14510|Vega:OTTHUMG00000153104 2 2q11.2 von Willebrand factor A domain containing 3B protein-coding VWA3B von Willebrand factor A domain containing 3B O von Willebrand factor A domain-containing protein 3B 20121230 -9606 200407 CREG2 - - HGNC:14272|Ensembl:ENSG00000175874|HPRD:16753|Vega:OTTHUMG00000130692 2 2q11.2 cellular repressor of E1A-stimulated genes 2 protein-coding CREG2 cellular repressor of E1A-stimulated genes 2 O protein CREG2 20121230 -9606 200420 ALMS1P - ALMS1L HGNC:29586|HPRD:11245 2 2p13.1 Alstrom syndrome 1 pseudogene pseudo ALMS1P Alstrom syndrome 1 pseudogene O - 20121230 -9606 200424 TET3 hCG_40738 - HGNC:28313|MIM:613555|Ensembl:ENSG00000187605|Vega:OTTHUMG00000152823 2 2p13.1 tet methylcytosine dioxygenase 3 protein-coding TET3 tet methylcytosine dioxygenase 3 O methylcytosine dioxygenase TET3|probable methylcytosine dioxygenase TET3|tet oncogene family member 3 20121230 -9606 200504 GKN2 UNQ465/PRO813 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 HGNC:24588|Ensembl:ENSG00000183607|HPRD:17034|Vega:OTTHUMG00000152655 2 2p13.3 gastrokine 2 protein-coding GKN2 gastrokine 2 O BRICHOS domain containing 1B|blottin|down regulated in gastric cancer GDDR|down-regulated in gastric cancer GDDR|gastrokine-2|trefoil factor interactions(z) 1 20121230 -9606 200523 TEX37 - C2orf51|TSC21 HGNC:26341|Ensembl:ENSG00000172073|HPRD:08688|Vega:OTTHUMG00000130332 2 2p11.2 testis expressed 37 protein-coding TEX37 testis expressed 37 O Testis-Specific Conserved gene 21kDa|protein TSC21|testis-specific conserved protein of 21 kDa 20121230 -9606 200539 ANKRD23 - DARP|MARP3 HGNC:24470|MIM:610736|Ensembl:ENSG00000163126|HPRD:12462|Vega:OTTHUMG00000130534 2 2q11.2 ankyrin repeat domain 23 protein-coding ANKRD23 ankyrin repeat domain 23 O ankyrin repeat domain-containing protein 23|diabetes related ankyrin repeat protein|diabetes-related ankyrin repeat protein|muscle ankyrin repeat protein 3 20121230 -9606 200558 APLF - APFL|C2orf13|PALF|Xip1 HGNC:28724|MIM:611035|Ensembl:ENSG00000169621|HPRD:09848|Vega:OTTHUMG00000129566 2 2p13.3 aprataxin and PNKP like factor protein-coding APLF aprataxin and PNKP like factor O PNK and APTX-like FHA domain-containing protein|PNK and APTX-like FHA protein|XRCC1-interacting protein 1|aprataxin and PNK-like factor|aprataxin- and PNK-like factor|apurinic-apyrimidinic endonuclease APLF 20121230 -9606 200575 CRYGEP - CCL|CRYG5|CRYGEP1|D2S1472|G2 HGNC:2412 2 2q33.3 crystallin, gamma E, pseudogene pseudo CRYGEP crystallin, gamma E, pseudogene O - 20121230 -9606 200576 PIKFYVE - CFD|FAB1|PIP5K|PIP5K3|ZFYVE29 HGNC:23785|MIM:609414|Ensembl:ENSG00000115020|HPRD:17852|Vega:OTTHUMG00000132945 2 2q34 phosphoinositide kinase, FYVE finger containing protein-coding PIKFYVE phosphoinositide kinase, FYVE finger containing O 1-phosphatidylinositol 3-phosphate 5-kinase|1-phosphatidylinositol-3-phosphate 5-kinase|PIPkin-III|phosphatidylinositol 3-phosphate 5-kinase type III|phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III|type III PIP kinase|zinc finger, FYVE domain containing 29 20121230 -9606 200609 LOC200609 - - - 2 2q37.3 uncharacterized LOC200609 protein-coding - - - - 20111113 -9606 200634 KRTCAP3 UNQ3066/PRO9898 KCP3|MRV222|PRO9898 HGNC:28943|Ensembl:ENSG00000157992|HPRD:17254|Vega:OTTHUMG00000097782 2 2p23.3 keratinocyte associated protein 3 protein-coding KRTCAP3 keratinocyte associated protein 3 O KCP-3|keratinocyte-associated protein 3|keratinocytes associated protein 3 20121230 -9606 200726 LOC200726 hCG_1657980 - - 2 2q33.3 hCG1657980 protein-coding - - - uncharacterized protein LOC200726 20121230 -9606 200728 TMEM17 - - HGNC:26623|MIM:614950|Ensembl:ENSG00000186889|HPRD:15528|Vega:OTTHUMG00000129455 2 2p15 transmembrane protein 17 protein-coding TMEM17 transmembrane protein 17 O - 20121230 -9606 200734 SPRED2 - Spred-2 HGNC:17722|MIM:609292|Ensembl:ENSG00000198369|HPRD:18100|Vega:OTTHUMG00000152737 2 2p14 sprouty-related, EVH1 domain containing 2 protein-coding SPRED2 sprouty-related, EVH1 domain containing 2 O sprouty protein with EVH-1 domain 2, related sequence|sprouty-related, EVH1 domain-containing protein 2 20121230 -9606 200765 TIGD1 - EEYORE HGNC:14523|MIM:612972|Ensembl:ENSG00000221944|HPRD:18185|Vega:OTTHUMG00000133260 2 2q37.1 tigger transposable element derived 1 protein-coding TIGD1 tigger transposable element derived 1 O tigger transposable element-derived protein 1 20121230 -9606 200772 LOC200772 - - - 2 2q37.3 uncharacterized LOC200772 miscRNA - - - - 20121230 -9606 200810 ALG1L - ALG1L1 HGNC:33721|Ensembl:ENSG00000189366|HPRD:18574|Vega:OTTHUMG00000159588 3 3q21.2 asparagine-linked glycosylation 1-like protein-coding ALG1L asparagine-linked glycosylation 1-like O asparagine-linked glycosylation 1-like 1|beta-1,4-mannosyltransferase-like|putative glycosyltransferase ALG1-like 20121230 -9606 200830 LOC200830 - - - 3 3q26.1 uncharacterized LOC200830 protein-coding - - - - 20120508 -9606 200844 C3orf67 - - HGNC:24763|Ensembl:ENSG00000163689|HPRD:13458|Vega:OTTHUMG00000159151 3 3p14.2 chromosome 3 open reading frame 67 protein-coding C3orf67 chromosome 3 open reading frame 67 O uncharacterized protein C3orf67 20121230 -9606 200845 KCTD6 - KCASH3 HGNC:22235|Ensembl:ENSG00000168301|HPRD:13769|Vega:OTTHUMG00000159161 3 3p14.3 potassium channel tetramerisation domain containing 6 protein-coding KCTD6 potassium channel tetramerisation domain containing 6 O BTB/POZ domain-containing protein KCTD6 20121230 -9606 200860 DKFZp547K1610 - - - 3 3q21.3 uncharacterized protein DKFZp547K1610 protein-coding - - - - 20111025 -9606 200879 LIPH - AH|ARWH2|LAH2|LPDLR|PLA1B|mPA-PLA1 HGNC:18483|MIM:607365|Ensembl:ENSG00000163898|HPRD:07392|Vega:OTTHUMG00000156657 3 3q27 lipase, member H protein-coding LIPH lipase, member H O LPD lipase-related protein|lipase H|lipase member H|mPA-PLA1 alpha|membrane-associated phosphatidic acid-selective phospholipase A1-alpha|membrane-bound phosphatidic acid-selective phospholipase A1|phospholipase A1 member B 20121230 -9606 200894 ARL13B - ARL2L1|JBTS8 HGNC:25419|MIM:608922|Ensembl:ENSG00000169379|HPRD:12334|Vega:OTTHUMG00000159012 3 3q11.1 ADP-ribosylation factor-like 13B protein-coding ARL13B ADP-ribosylation factor-like 13B O ADP-ribosylation factor-like 2-like 1|ADP-ribosylation factor-like protein 13B|ARL2-like protein 1 20121230 -9606 200895 DHFRL1 - DHFRP4 HGNC:27309|Ensembl:ENSG00000178700|HPRD:11246|Vega:OTTHUMG00000159014 3 3q11.1 dihydrofolate reductase-like 1 protein-coding DHFRL1 dihydrofolate reductase-like 1 O dihydrofolate reductase pseudogene 4|dihydrofolate reductase, mitochondrial|dihydrofolate reductase-like protein 1 20121230 -9606 200909 HTR3D - 5HT3D HGNC:24004|MIM:610122|Ensembl:ENSG00000186090|HPRD:17121|Vega:OTTHUMG00000156858 3 3q27.1 5-hydroxytryptamine (serotonin) receptor 3D, ionotropic protein-coding HTR3D 5-hydroxytryptamine (serotonin) receptor 3D, ionotropic O 5-hydroxytryptamine (serotonin) receptor 3 family member D|5-hydroxytryptamine receptor 3 subunit D|5-hydroxytryptamine receptor 3D|serotonin 5-HT-3D receptor|serotonin receptor 3D 20121230 -9606 200916 RPL22L1 - - HGNC:27610|Ensembl:ENSG00000163584|Vega:OTTHUMG00000158957 3 3q26.2 ribosomal protein L22-like 1 protein-coding RPL22L1 ribosomal protein L22-like 1 O 60S ribosomal protein L22-like 1 20121230 -9606 200931 SLC51A - OSTA|OSTalpha HGNC:29955|MIM:612084|Ensembl:ENSG00000163959|HPRD:17810|Vega:OTTHUMG00000155684 3 3q29 solute carrier family 51, alpha subunit protein-coding SLC51A solute carrier family 51, alpha subunit O OST-alpha|organic solute transporter alpha|organic solute transporter subunit alpha|organic solute transporter, alpha subunit|solute carrier family 51 subunit alpha 20121230 -9606 200933 FBXO45 - Fbx45 HGNC:29148|MIM:609112|Ensembl:ENSG00000174013|Vega:OTTHUMG00000155571 3 3q29 F-box protein 45 protein-coding FBXO45 F-box protein 45 O F-box only protein 45|F-box/SPRY domain-containing protein 1|hFbxo45 20121230 -9606 200942 KLHDC8B FP17659 - HGNC:28557|MIM:613169|Ensembl:ENSG00000185909|HPRD:14598|Vega:OTTHUMG00000156814 3 3p21.31 kelch domain containing 8B protein-coding KLHDC8B kelch domain containing 8B O kelch domain-containing protein 8B 20121230 -9606 200958 MUC20 UNQ2782/PRO7170 MUC-20 HGNC:23282|MIM:610360|Ensembl:ENSG00000176945|HPRD:17615|Vega:OTTHUMG00000155823 3 3q29 mucin 20, cell surface associated protein-coding MUC20 mucin 20, cell surface associated O mucin-20|transmembrane mucin MUC20S 20121230 -9606 200959 GABRR3 - - HGNC:17969 3 3q11.2 gamma-aminobutyric acid (GABA) A receptor, rho 3 protein-coding GABRR3 gamma-aminobutyric acid (GABA) A receptor, rho 3 O GABA(A) receptor subunit rho-3|GABA(C) receptor|gamma-aminobutyric acid (GABA) receptor, rho 3|gamma-aminobutyric acid receptor subunit rho-3 20121230 -9606 201134 CEP112 - CCDC46|MACOCO HGNC:28514|Ensembl:ENSG00000154240|HPRD:11336|Vega:OTTHUMG00000179474 17 17q24.1 centrosomal protein 112kDa protein-coding CEP112 centrosomal protein 112kDa O centrosomal protein of 112 kDa|coiled-coil domain containing 46|coiled-coil domain-containing protein 46 20121230 -9606 201140 DHRS7C - SDR32C2 HGNC:32423|Ensembl:ENSG00000184544|Vega:OTTHUMG00000177944 17 17p13.1 dehydrogenase/reductase (SDR family) member 7C protein-coding DHRS7C dehydrogenase/reductase (SDR family) member 7C O dehydrogenase/reductase SDR family member 7C|short chain dehydrogenase/reductase family 32C, member 2 20121230 -9606 201158 TVP23C Nbla10383 FAM18B2 HGNC:30453|Ensembl:ENSG00000175106|HPRD:14125|Vega:OTTHUMG00000171461 17 17p12 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) protein-coding TVP23C trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) O family with sequence similarity 18, member B2|protein FAM18B2 20121230 -9606 201161 CENPV - 3110013H01Rik|CENP-V|PRR6|p30 HGNC:29920|MIM:608139|Ensembl:ENSG00000166582|Vega:OTTHUMG00000059345 17 17p11.2 centromere protein V protein-coding CENPV centromere protein V O nuclear protein p30|proline rich 6|proline-rich protein 6 20121230 -9606 201163 FLCN - BHD|FLCL HGNC:27310|MIM:607273|Ensembl:ENSG00000154803|HPRD:06278|Vega:OTTHUMG00000059275 17 17p11.2 folliculin protein-coding FLCN folliculin O BHD skin lesion fibrofolliculoma protein|birt-Hogg-Dube syndrome protein 20121230 -9606 201164 PLD6 - ZUC HGNC:30447|MIM:614960|Ensembl:ENSG00000179598|HPRD:14126|Vega:OTTHUMG00000059278 17 17p11.2 phospholipase D family, member 6 protein-coding PLD6 phospholipase D family, member 6 O PLD 6|choline phosphatase 6|mitoPLD|mitochondrial cardiolipin hydrolase|mitochondrial phospholipase|phosphatidylcholine-hydrolyzing phospholipase D6|phospholipase D6|protein zucchini homolog 20121230 -9606 201176 ARHGAP27 hCG_1992862 CAMGAP1|PP905|SH3D20|SH3P20 HGNC:31813|MIM:610591|Ensembl:ENSG00000159314|HPRD:12477|Vega:OTTHUMG00000166982 17 17q21.31 Rho GTPase activating protein 27 protein-coding ARHGAP27 Rho GTPase activating protein 27 O CIN85-associated multi-domain-containing Rho GTPase-activating protein 1|SH3 domain containing 20|SH3 domain-containing protein 20|rho GTPase-activating protein 27|rho-type GTPase-activating protein 27 20121230 -9606 201181 ZNF385C - - HGNC:33722|Ensembl:ENSG00000187595|HPRD:13245|Vega:OTTHUMG00000132073 17 17q21.2 zinc finger protein 385C protein-coding ZNF385C zinc finger protein 385C O - 20121230 -9606 201191 SAMD14 - - HGNC:27312|Ensembl:ENSG00000167100|HPRD:14127|Vega:OTTHUMG00000161992 17 17q21.33 sterile alpha motif domain containing 14 protein-coding SAMD14 sterile alpha motif domain containing 14 O SAM domain-containing protein 14|sterile alpha motif domain-containing protein 14 20121230 -9606 201229 LYRM9 HSD24 C17orf108 HGNC:27314|Ensembl:ENSG00000232859|Vega:OTTHUMG00000132829 17 17q11.2 LYR motif containing 9 protein-coding LYRM9 LYR motif containing 9 O UPF0631 protein C17orf108 20121230 -9606 201232 SLC16A13 - MCT13 HGNC:31037|Ensembl:ENSG00000174327|HPRD:18054|Vega:OTTHUMG00000102089 17 17p13.1 solute carrier family 16, member 13 (monocarboxylic acid transporter 13) protein-coding SLC16A13 solute carrier family 16, member 13 (monocarboxylic acid transporter 13) O MCT 13|monocarboxylate transporter 13|solute carrier family 16 (monocarboxylic acid transporters), member 13|solute carrier family 16 member 13 20121230 -9606 201243 C17orf74 - - HGNC:27315|Ensembl:ENSG00000184560|HPRD:14128|Vega:OTTHUMG00000178190 17 17p13.1 chromosome 17 open reading frame 74 protein-coding C17orf74 chromosome 17 open reading frame 74 O uncharacterized protein C17orf74 20121230 -9606 201254 STRA13 - CENP-X|FAAP10|MHF2 HGNC:11422|Ensembl:ENSG00000169689|HPRD:18121|Vega:OTTHUMG00000132129 17 17q25.3 stimulated by retinoic acid 13 homolog (mouse) protein-coding STRA13 stimulated by retinoic acid 13 homolog (mouse) O FANCM-interacting histone fold protein 2|Fanconi anemia-associated polypeptide of 10 kDa|centromere protein X|retinoic acid-inducible gene D9 protein homolog|stimulated by retinoic acid gene 13 protein homolog 20121230 -9606 201255 LRRC45 - - HGNC:28302|Ensembl:ENSG00000169683|HPRD:14476|Vega:OTTHUMG00000178454 17 17q25.3 leucine rich repeat containing 45 protein-coding LRRC45 leucine rich repeat containing 45 O leucine-rich repeat-containing protein 45 20121230 -9606 201259 RPL32P31 - RPL32_21_1577 HGNC:37035 17 17q25.3 ribosomal protein L32 pseudogene 31 pseudo RPL32P31 ribosomal protein L32 pseudogene 31 O - 20121230 -9606 201266 SLC39A11 - C17orf26|ZIP11 HGNC:14463|Ensembl:ENSG00000133195|HPRD:15383|Vega:OTTHUMG00000178306 17 17q21.31 solute carrier family 39 (metal ion transporter), member 11 protein-coding SLC39A11 solute carrier family 39 (metal ion transporter), member 11 O ZIP-11|Zrt- and Irt-like protein 11|solute carrier family 39 member 11|zinc transporter ZIP11 20121230 -9606 201283 AMZ2P1 - - HGNC:26491|HPRD:08720 17 17q24.1 archaelysin family metallopeptidase 2 pseudogene 1 pseudo AMZ2P1 archaelysin family metallopeptidase 2 pseudogene 1 O - 20121230 -9606 201288 NOS2P2 - NOS2B HGNC:7874|MIM:600719 17 17p11.2 nitric oxide synthase 2 pseudogene 2 pseudo NOS2P2 nitric oxide synthase 2 pseudogene 2 O - 20121230 -9606 201292 TRIM65 - 4732463G12Rik HGNC:27316|Ensembl:ENSG00000141569|HPRD:15569|Vega:OTTHUMG00000132127 17 17q25.1 tripartite motif containing 65 protein-coding TRIM65 tripartite motif containing 65 O tripartite motif-containing protein 65 20121230 -9606 201294 UNC13D - FHL3|HLH3|HPLH3|Munc13-4 HGNC:23147|MIM:608897|Ensembl:ENSG00000092929|HPRD:10598|Vega:OTTHUMG00000179895 17 17q25.1 unc-13 homolog D (C. elegans) protein-coding UNC13D unc-13 homolog D (C. elegans) O protein unc-13 homolog D 20121230 -9606 201299 RDM1 - RAD52B HGNC:19950|MIM:612896|Ensembl:ENSG00000187456|HPRD:15205|Vega:OTTHUMG00000133003 17 17q11.2 RAD52 motif 1 protein-coding RDM1 RAD52 motif 1 O RAD52 homolog B|RAD52 motif-containing protein 1 20121230 -9606 201305 SPNS3 - - HGNC:28433|MIM:611701|Ensembl:ENSG00000182557|HPRD:14531|Vega:OTTHUMG00000177737 17 17p13.2 spinster homolog 3 (Drosophila) protein-coding SPNS3 spinster homolog 3 (Drosophila) O protein spinster homolog 3 20121230 -9606 201456 FBXO15 - FBX15 HGNC:13617|MIM:609093|Ensembl:ENSG00000141665|HPRD:16435|Vega:OTTHUMG00000132842 18 18q22.3 F-box protein 15 protein-coding FBXO15 F-box protein 15 O F-box only protein 15 20121230 -9606 201475 RAB12 - - HGNC:31332|Ensembl:ENSG00000206418|Vega:OTTHUMG00000178949 18 18p11.22 RAB12, member RAS oncogene family protein-coding RAB12 RAB12, member RAS oncogene family O putative Ras-related protein Rab-12|ras-related protein Rab-12 20121230 -9606 201477 DLGAP1-AS3 - - HGNC:27317 18 18p11.31 DLGAP1 antisense RNA 3 miscRNA DLGAP1-AS3 DLGAP1 antisense RNA 3 O - 20121230 -9606 201501 ZBTB7C - APM-1|APM1|ZBTB36|ZNF857C HGNC:31700|Ensembl:ENSG00000184828|Vega:OTTHUMG00000180322 18 18q21.1 zinc finger and BTB domain containing 7C protein-coding ZBTB7C zinc finger and BTB domain containing 7C O B230208J24Rik|affected by papillomavirus DNA integration in ME180 cells protein 1|zinc finger and BTB domain containing 36|zinc finger and BTB domain-containing protein 36|zinc finger and BTB domain-containing protein 7C|zinc finger protein 857C 20121230 -9606 201514 ZNF584 - - HGNC:27318|Ensembl:ENSG00000171574|HPRD:15861 19 19q13.43 zinc finger protein 584 protein-coding ZNF584 zinc finger protein 584 O - 20121230 -9606 201516 ZSCAN4 - ZNF494 HGNC:23709|MIM:613419|Ensembl:ENSG00000180532|HPRD:15899 19 19q13.43 zinc finger and SCAN domain containing 4 protein-coding ZSCAN4 zinc finger and SCAN domain containing 4 O zinc finger and SCAN domain-containing protein 4|zinc finger protein 494 20121230 -9606 201562 PTPLB - HACD2 HGNC:9640|Ensembl:ENSG00000206527|HPRD:17930|Vega:OTTHUMG00000159529 3 3q21.1 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b protein-coding PTPLB protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b O 3-hydroxyacyl-CoA dehydratase 2|protein-tyrosine phosphatase-like member B 20121230 -9606 201595 STT3B - SIMP|STT3-B HGNC:30611|MIM:608605|Ensembl:ENSG00000163527|HPRD:12268|Vega:OTTHUMG00000130673 3 3p23 STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) protein-coding STT3B STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) O dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B|homolog of yeast STT3|oligosaccharyl transferase subunit STT3B|source of immunodominant MHC associated peptides|source of immunodominant MHC-associated peptides homolog 20121230 -9606 201617 LOC201617 - - - 3 3p14.2 uncharacterized LOC201617 miscRNA - - - - 20121230 -9606 201625 DNAH12 hCG_1779312 DHC3|DLP12|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 HGNC:2943|MIM:603340|Ensembl:ENSG00000174844|HPRD:08281|Vega:OTTHUMG00000158598 3 3p14.3 dynein, axonemal, heavy chain 12 protein-coding DNAH12 dynein, axonemal, heavy chain 12 O axonemal beta dynein heavy chain 12|axonemal dynein heavy chain isotype3|ciliary dynein heavy chain 12|dynein heavy chain 12, axonemal|dynein heavy chain domain-containing protein 2|dynein, axonemal, heavy polypeptide 12|dynein, heavy chain-5 20121230 -9606 201626 PDE12 - 2'-PDE HGNC:25386|Ensembl:ENSG00000174840|HPRD:11842|Vega:OTTHUMG00000158599 3 3p14.3 phosphodiesterase 12 protein-coding PDE12 phosphodiesterase 12 O 2',5'-phosphodiesterase 12|2'-phosphodiesterase|2-PDE 20121230 -9606 201627 DENND6A - AFI1A|FAM116A HGNC:26635|Ensembl:ENSG00000174839|HPRD:08756|Vega:OTTHUMG00000158639 3 3p14.3 DENN/MADD domain containing 6A protein-coding DENND6A DENN/MADD domain containing 6A O family with sequence similarity 116, member A|protein FAM116A 20121230 -9606 201633 TIGIT - VSIG9|VSTM3|WUCAM HGNC:26838|MIM:612859|Ensembl:ENSG00000181847|HPRD:08804|Vega:OTTHUMG00000159331 3 3q13.31 T cell immunoreceptor with Ig and ITIM domains protein-coding TIGIT T cell immunoreceptor with Ig and ITIM domains O T-cell immunoreceptor with Ig and ITIM domains|V-set and immunoglobulin domain containing 9|V-set and immunoglobulin domain-containing protein 9|V-set and transmembrane domain containing 3|V-set and transmembrane domain-containing protein 3|Washington University cell adhesion molecule 20121230 -9606 201651 LOC201651 - - - 3 3q25.1 arylacetamide deacetylase (esterase) pseudogene pseudo - - - - 20121230 -9606 201725 C4orf46 - - HGNC:27320|Ensembl:ENSG00000205208|HPRD:17319|Vega:OTTHUMG00000161919 4 4q32.1 chromosome 4 open reading frame 46 protein-coding C4orf46 chromosome 4 open reading frame 46 O uncharacterized protein C4orf46 20121230 -9606 201780 SLC10A4 - P4 HGNC:22980|Ensembl:ENSG00000145248|HPRD:11562|Vega:OTTHUMG00000102092 4 4p11 solute carrier family 10 (sodium/bile acid cotransporter family), member 4 protein-coding SLC10A4 solute carrier family 10 (sodium/bile acid cotransporter family), member 4 O Na(+)/bile acid cotransporter 4|bile acid transporter SLC10A4|sodium/bile acid cotransporter 4|solute carrier family 10 member 4 20121230 -9606 201798 TIGD4 - - HGNC:18335|Ensembl:ENSG00000169989|HPRD:18188|Vega:OTTHUMG00000161464 4 4q31.3 tigger transposable element derived 4 protein-coding TIGD4 tigger transposable element derived 4 O tigger transposable element-derived protein 4 20121230 -9606 201799 TMEM154 - - HGNC:26489|Ensembl:ENSG00000170006|HPRD:08719|Vega:OTTHUMG00000161463 4 4q31.3 transmembrane protein 154 protein-coding TMEM154 transmembrane protein 154 O - 20121230 -9606 201895 SMIM14 - C4orf34 HGNC:27321|Ensembl:ENSG00000163683|HPRD:14129|Vega:OTTHUMG00000128581 4 4p14 small integral membrane protein 14 protein-coding SMIM14 small integral membrane protein 14 O uncharacterized protein C4orf34 20121230 -9606 201931 TMEM192 - - HGNC:26775|Ensembl:ENSG00000170088|HPRD:08787|Vega:OTTHUMG00000161254 4 4q32.3 transmembrane protein 192 protein-coding TMEM192 transmembrane protein 192 O - 20121230 -9606 201965 RWDD4 - FAM28A|RWDD4A HGNC:23750|Ensembl:ENSG00000182552|HPRD:14393|Vega:OTTHUMG00000160632 4 4q35.1 RWD domain containing 4 protein-coding RWDD4 RWD domain containing 4 O RWD domain containing 4A|RWD domain-containing protein 4|RWD domain-containing protein 4A|family with sequence similarity 28, member A 20121230 -9606 201973 CCDC111 - - HGNC:26575|Ensembl:ENSG00000164306|HPRD:08742|Vega:OTTHUMG00000160495 4 4q35.1 coiled-coil domain containing 111 protein-coding CCDC111 coiled-coil domain containing 111 O coiled-coil domain-containing protein 111 20121230 -9606 201989 GK6P - GK7P|GKP1 HGNC:23263 4 4q26 glycerol kinase 6 pseudogene pseudo GK6P glycerol kinase 6 pseudogene O - 20121230 -9606 202018 TAPT1 - CMVFR HGNC:26887|MIM:612758|Ensembl:ENSG00000169762|Vega:OTTHUMG00000160177 4 4p15.32 transmembrane anterior posterior transformation 1 protein-coding TAPT1 transmembrane anterior posterior transformation 1 O cytomegalovirus partial fusion receptor|transmembrane anterior posterior transformation protein 1 homolog 20121230 -9606 202020 TAPT1-AS1 - - HGNC:26832|HPRD:08263 4 4p15.32 TAPT1 antisense RNA 1 (head to head) miscRNA TAPT1-AS1 TAPT1 antisense RNA 1 (head to head) O - 20121230 -9606 202025 LOC202025 - - - 4 4p16.1 uncharacterized LOC202025 unknown - - - - 20120622 -9606 202051 SPATA24 - CCDC161|T6441 HGNC:27322|Ensembl:ENSG00000170469|Vega:OTTHUMG00000163388 5 5q31.2 spermatogenesis associated 24 protein-coding SPATA24 spermatogenesis associated 24 O coiled-coil domain containing 161|spermatogenesis-associated protein 24|testis protein T6441 homolog 20121230 -9606 202052 DNAJC18 - - HGNC:28429|Ensembl:ENSG00000170464|HPRD:07130|Vega:OTTHUMG00000129225 5 5q31.2 DnaJ (Hsp40) homolog, subfamily C, member 18 protein-coding DNAJC18 DnaJ (Hsp40) homolog, subfamily C, member 18 O dnaJ homolog subfamily C member 18 20121230 -9606 202122 RPL27P10 - RPL27_5_551 HGNC:35494 5 5p13.3 ribosomal protein L27 pseudogene 10 pseudo RPL27P10 ribosomal protein L27 pseudogene 10 O - 20121230 -9606 202134 FAM153B - - HGNC:27323|Ensembl:ENSG00000182230|Vega:OTTHUMG00000163181 5 5q35.2 family with sequence similarity 153, member B protein-coding FAM153B family with sequence similarity 153, member B O protein FAM153B 20121230 -9606 202151 RANBP3L - - HGNC:26353|Ensembl:ENSG00000164188|HPRD:08064|Vega:OTTHUMG00000131110 5 5p13.2 RAN binding protein 3-like protein-coding RANBP3L RAN binding protein 3-like O ran-binding protein 3-like 20121230 -9606 202181 LOC202181 - - - 5 5q35.3 SUMO-interacting motifs containing 1 pseudogene pseudo - - - - 20121230 -9606 202227 LOC202227 - - - 5 5q12.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 202243 CCDC125 - KENAE HGNC:28924|MIM:613781|Ensembl:ENSG00000183323|HPRD:13774|Vega:OTTHUMG00000131259 5 5q13.2 coiled-coil domain containing 125 protein-coding CCDC125 coiled-coil domain containing 125 O Kenae|coiled-coil domain-containing protein 125 20121230 -9606 202299 C5orf27 - FIS HGNC:24687|HPRD:16896 5 5q15 chromosome 5 open reading frame 27 miscRNA C5orf27 chromosome 5 open reading frame 27 O - 20121230 -9606 202309 GAPT - C5orf29 HGNC:26588|Ensembl:ENSG00000175857|HPRD:08161|Vega:OTTHUMG00000131219 5 5q11.2 GRB2-binding adaptor protein, transmembrane protein-coding GAPT GRB2-binding adaptor protein, transmembrane O GRB2-binding transmembrane adaptor|growth factor receptor-bound protein 2-binding adapter protein, transmembrane|protein GAPT 20121230 -9606 202319 LOC202319 - - - 5 5q11.1 peptidylprolyl isomerase A (cyclophilin A)-like 4G pseudogene pseudo - - - - 20121230 -9606 202333 CMYA5 - C5orf10|SPRYD2|TRIM76 HGNC:14305|MIM:612193|Ensembl:ENSG00000164309|HPRD:16728|Vega:OTTHUMG00000162548 5 5q14.1 cardiomyopathy associated 5 protein-coding CMYA5 cardiomyopathy associated 5 O 2310076E16Rik|SPRY domain-containing protein 2|cardiomyopathy-associated protein 5|dystrobrevin-binding protein 2|genethonin-3|myospryn|tripartite motif-containing 76|tripartite motif-containing protein 76 20121230 -9606 202374 STK32A - YANK1 HGNC:28317|Ensembl:ENSG00000169302|HPRD:15445|Vega:OTTHUMG00000163411 5 5q32 serine/threonine kinase 32A protein-coding STK32A serine/threonine kinase 32A O A930015B13Rik|serine/threonine-protein kinase 32A 20121230 -9606 202459 OSTCP1 - DC2L|OSTCL HGNC:30530|HPRD:14130 6 6q25.3 oligosaccharyltransferase complex subunit pseudogene 1 pseudo OSTCP1 oligosaccharyltransferase complex subunit pseudogene 1 O - 20121230 -9606 202500 TCTE1 RP11-444E17.2 D6S46 HGNC:11693|MIM:186975|Ensembl:ENSG00000146221|HPRD:14568|Vega:OTTHUMG00000014763 6 6p21.1 t-complex-associated-testis-expressed 1 protein-coding TCTE1 t-complex-associated-testis-expressed 1 O T-complex-associated testis-expressed protein 1|tcte-1 20121230 -9606 202559 KHDRBS2 - SLM-1|SLM1|bA535F17.1 HGNC:18114|MIM:610487|Ensembl:ENSG00000112232|HPRD:13775|Vega:OTTHUMG00000014936 6 6q11.1 KH domain containing, RNA binding, signal transduction associated 2 protein-coding KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 O KH domain-containing, RNA-binding, signal transduction-associated protein 2|Sam68-like mammalian protein 1|hSLM-1 20121230 -9606 202658 TRIM39-RPP21 - TRIM39R HGNC:38845|Ensembl:ENSG00000248167|Vega:OTTHUMG00000161144 6 - TRIM39-RPP21 readthrough protein-coding TRIM39-RPP21 TRIM39-RPP21 readthrough O Rpp21 domain-containing TRIM protein|TRIM39-RPP21 protein|TRIM39-RPP21 read-through transcript 20121230 -9606 202781 LOC202781 - - - 7 7q36.2 uncharacterized LOC202781 miscRNA - - - - 20121230 -9606 202789 RPL17P27 tcag7.1263 RPL17_17_857 HGNC:36038 7 7q34 ribosomal protein L17 pseudogene 27 pseudo RPL17P27 ribosomal protein L17 pseudogene 27 O - 20121230 -9606 202861 OR2A3P - OR2A18P HGNC:8231 7 7q35 olfactory receptor, family 2, subfamily A, member 3 pseudogene pseudo OR2A3P olfactory receptor, family 2, subfamily A, member 3 pseudogene O - 20121230 -9606 202865 C7orf33 - - HGNC:21724|Ensembl:ENSG00000170279|HPRD:12921|Vega:OTTHUMG00000152756 7 7q36.1 chromosome 7 open reading frame 33 protein-coding C7orf33 chromosome 7 open reading frame 33 O uncharacterized protein C7orf33 20121230 -9606 202915 TMEM184A tcag7.540 - HGNC:28797|Ensembl:ENSG00000164855|HPRD:14716|Vega:OTTHUMG00000119025 7 7p22.3 transmembrane protein 184A protein-coding TMEM184A transmembrane protein 184A O - 20121230 -9606 203054 ADCK5 - - HGNC:21738|Ensembl:ENSG00000173137|HPRD:12427|Vega:OTTHUMG00000165190 8 8q24.3 aarF domain containing kinase 5 protein-coding ADCK5 aarF domain containing kinase 5 O uncharacterized aarF domain-containing protein kinase 5 20121230 -9606 203062 TSNARE1 - - HGNC:26437|Ensembl:ENSG00000171045|HPRD:08708|Vega:OTTHUMG00000164867 8 8q24.3 t-SNARE domain containing 1 protein-coding TSNARE1 t-SNARE domain containing 1 O t-SNARE domain-containing protein 1 20121230 -9606 203068 TUBB DAAP-285E11.4 M40|OK/SW-cl.56|TUBB1|TUBB5 HGNC:20778|MIM:191130|Ensembl:ENSG00000196230|Vega:OTTHUMG00000031059 6 6p21.33 tubulin, beta class I protein-coding TUBB tubulin, beta class I O beta 5-tubulin|beta Ib tubulin|beta-4 tubulin|beta1-tubulin|class I beta-tubulin|tubulin beta chain|tubulin beta polypeptide|tubulin beta-1 chain|tubulin beta-5 chain|tubulin, beta polypeptide 20121230 -9606 203069 R3HCC1 - - HGNC:27329|Ensembl:ENSG00000104679|Vega:OTTHUMG00000163786 8 8p21.3 R3H domain and coiled-coil containing 1 protein-coding R3HCC1 R3H domain and coiled-coil containing 1 O R3H and coiled-coil domain-containing protein 1 20121230 -9606 203074 PRSS55 UNQ9391/PRO34284 T-SP1|UNQ9391 HGNC:30824|Ensembl:ENSG00000184647|HPRD:07162|Vega:OTTHUMG00000129345 8 8p23.1 protease, serine, 55 protein-coding PRSS55 protease, serine, 55 O probable serine protease UNQ9391/PRO34284|serine protease 55|testis serine protease 1|tryptophan/serine protease 20121230 -9606 203076 C8orf74 - - HGNC:32296|Ensembl:ENSG00000171060|Vega:OTTHUMG00000163807 8 8p23.1 chromosome 8 open reading frame 74 protein-coding C8orf74 chromosome 8 open reading frame 74 O uncharacterized protein C8orf74 20121230 -9606 203100 HTRA4 - - HGNC:26909|MIM:610700|Ensembl:ENSG00000169495|HPRD:08818|Vega:OTTHUMG00000164070 8 8p11.22 HtrA serine peptidase 4 protein-coding HTRA4 HtrA serine peptidase 4 O high-temperature requirement factor A4|probable serine protease HTRA4|serine protease HTRA4 20121230 -9606 203102 ADAM32 UNQ5982/PRO21340 - HGNC:15479|Ensembl:ENSG00000197140|HPRD:16475|Vega:OTTHUMG00000164071 8 8p11.22 ADAM metallopeptidase domain 32 protein-coding ADAM32 ADAM metallopeptidase domain 32 O ADAM 32|a disintegrin and metalloprotease domain 32|a disintegrin and metalloproteinase domain 32|disintegrin and metalloproteinase domain-containing protein 32|metalloproteinase 12-like protein 20121230 -9606 203111 C8orf47 - - HGNC:26823|Ensembl:ENSG00000177459|HPRD:08802|Vega:OTTHUMG00000164819 8 8q22.2 chromosome 8 open reading frame 47 protein-coding C8orf47 chromosome 8 open reading frame 47 O uncharacterized protein C8orf47 20121230 -9606 203190 LGI3 UNQ8190/PRO23199 LGIL4 HGNC:18711|MIM:608302|Ensembl:ENSG00000168481|HPRD:06432|Vega:OTTHUMG00000131599 8 8p21.3 leucine-rich repeat LGI family, member 3 protein-coding LGI3 leucine-rich repeat LGI family, member 3 O LGI1-like protein 4|leucine-rich glioma-inactivated protein 3|leucine-rich repeat LGI family member 3 20121230 -9606 203197 C9orf91 - RP11-402G3.2 HGNC:24513|Ensembl:ENSG00000157693|HPRD:12988|Vega:OTTHUMG00000020541 9 9q32 chromosome 9 open reading frame 91 protein-coding C9orf91 chromosome 9 open reading frame 91 O transmembrane protein C9orf91 20121230 -9606 203228 C9orf72 - ALSFTD|FTDALS HGNC:28337|MIM:614260|Ensembl:ENSG00000147894|HPRD:12975|Vega:OTTHUMG00000019716 9 9p21.2 chromosome 9 open reading frame 72 protein-coding C9orf72 chromosome 9 open reading frame 72 O uncharacterized protein C9orf72 20121230 -9606 203235 C9orf141 RP11-229P13.5 - HGNC:18147 9 9q34.3 chromosome 9 open reading frame 141 unknown C9orf141 chromosome 9 open reading frame 141 O - 20121216 -9606 203238 CCDC171 RP11-536D16.1 C9orf93|bA536D16.1|bA778P13.1 HGNC:29828|Ensembl:ENSG00000164989|HPRD:10805|Vega:OTTHUMG00000019584 9 9p22.3 coiled-coil domain containing 171 protein-coding CCDC171 coiled-coil domain containing 171 O coiled-coil domain-containing protein 171|myosin tail domain containing protein 20121230 -9606 203245 NAIF1 - C9orf90|RP11-379C10.2|bA379C10.2 HGNC:25446|MIM:610673|Ensembl:ENSG00000171169|HPRD:12987|Vega:OTTHUMG00000020727 9 9q34.11 nuclear apoptosis inducing factor 1 protein-coding NAIF1 nuclear apoptosis inducing factor 1 O nuclear apoptosis-inducing factor 1 20121230 -9606 203259 FAM219A RP11-573M23.5 C9orf25|bA573M23.5 HGNC:19920|Ensembl:ENSG00000164970|HPRD:12950|Vega:OTTHUMG00000019822 9 9p13.3 family with sequence similarity 219, member A protein-coding FAM219A family with sequence similarity 219, member A O protein FAM219A|uncharacterized protein C9orf25 20121230 -9606 203260 CCDC107 RP11-331F9.6 PSEC0222 HGNC:28465|Ensembl:ENSG00000159884|HPRD:14545|Vega:OTTHUMG00000019868 9 9p13.3 coiled-coil domain containing 107 protein-coding CCDC107 coiled-coil domain containing 107 O coiled-coil domain-containing protein 107 20121230 -9606 203274 LINC00537 - - HGNC:43654 9 9q21.11 long intergenic non-protein coding RNA 537 protein-coding LINC00537 long intergenic non-protein coding RNA 537 O uncharacterized protein LOC203274 20120909 -9606 203286 ANKS6 RP11-207C11.3 ANKRD14|SAMD6 HGNC:26724|Ensembl:ENSG00000165138|HPRD:18012|Vega:OTTHUMG00000020346|Vega:OTTHUMG00000020347 9 9q22.33 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 O SAM domain-containing protein 6|ankyrin repeat and SAM domain-containing protein 6|ankyrin repeat domain 14|ankyrin repeat domain-containing protein 14|samCystin|sterile alpha motif domain containing 6|sterile alpha motif domain-containing protein 6 20121230 -9606 203328 SUSD3 UNQ9387/PRO34275 - HGNC:28391|Ensembl:ENSG00000157303|HPRD:15453|Vega:OTTHUMG00000020241 9 9q22.31 sushi domain containing 3 protein-coding SUSD3 sushi domain containing 3 O sushi domain-containing protein 3 20121230 -9606 203413 CXorf61 RP3-452H17.2 CT83|KK-LC-1|KKLC1 HGNC:33494|MIM:300625|Ensembl:ENSG00000204019|HPRD:18577|Vega:OTTHUMG00000022244 X Xq23 chromosome X open reading frame 61 protein-coding CXorf61 chromosome X open reading frame 61 O cancer/testis antigen 83|kita-kyushu lung cancer antigen 1 20121230 -9606 203414 CXorf24 RP1-230G1.6 - HGNC:27333 X Xp11.23 chromosome X open reading frame 24 unknown CXorf24 chromosome X open reading frame 24 O - 20121230 -9606 203427 SLC25A43 - - HGNC:30557|MIM:300641|Ensembl:ENSG00000077713|HPRD:06617|Vega:OTTHUMG00000022272 X Xq24 solute carrier family 25, member 43 protein-coding SLC25A43 solute carrier family 25, member 43 O solute carrier family 25 member 43 20121230 -9606 203429 FAM226A - CXorf50|LINC00246A|NCRNA00246|NCRNA00246A HGNC:28544|HPRD:06648 X Xq13.2 family with sequence similarity 226, member A (non-protein coding) miscRNA FAM226A family with sequence similarity 226, member A (non-protein coding) O - 20121230 -9606 203430 ZCCHC5 - Mar3|Mart3|ZHC5 HGNC:22997|Ensembl:ENSG00000179300|HPRD:06756|Vega:OTTHUMG00000021892 X Xq21.1 zinc finger, CCHC domain containing 5 protein-coding ZCCHC5 zinc finger, CCHC domain containing 5 O mammalian retrotransposon-derived 3|zinc finger CCHC domain-containing protein 5 20121230 -9606 203447 NRK RP1-82J11.1 NESK HGNC:25391|MIM:300791|Ensembl:ENSG00000123572|HPRD:14841|Vega:OTTHUMG00000022143 X Xq22.3 Nik related kinase protein-coding NRK Nik related kinase O nik-related protein kinase 20121230 -9606 203477 HMGA1P1 - HMGA1L1|HMGIYL1 HGNC:13321 X Xp22 high mobility group AT-hook 1 pseudogene 1 pseudo HMGA1P1 high mobility group AT-hook 1 pseudogene 1 O - 20121230 -9606 203510 HMGB3P30 - - HGNC:39333 X Xq23 high mobility group box 3 pseudogene 30 pseudo HMGB3P30 high mobility group box 3 pseudogene 30 O - 20121230 -9606 203522 DDX26B RP11-432N13.1 - HGNC:27334|Ensembl:ENSG00000165359|HPRD:06618|Vega:OTTHUMG00000022484 X Xq26.3 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B protein-coding DDX26B DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B O protein DDX26B 20121230 -9606 203523 ZNF449 - ZSCAN19 HGNC:21039|MIM:300627|Ensembl:ENSG00000173275|HPRD:06543|Vega:OTTHUMG00000022478 X Xq26.3 zinc finger protein 449 protein-coding ZNF449 zinc finger protein 449 O zinc finger and SCAN domain-containing protein 19 20121230 -9606 203547 VMA21 - MEAX|XMEA HGNC:22082|MIM:310440|Ensembl:ENSG00000160131|HPRD:18578|Vega:OTTHUMG00000024168 X Xq28 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein-coding VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) O myopathy with excessive autophagy protein|vacuolar ATPase assembly integral membrane protein VMA21 20121230 -9606 203562 TMEM31 RP5-1055C14.8 - HGNC:28601|Ensembl:ENSG00000179363|HPRD:06652|Vega:OTTHUMG00000022109 X Xq22.2 transmembrane protein 31 protein-coding TMEM31 transmembrane protein 31 O - 20121230 -9606 203569 PAGE2 RP11-266I3.6 CT16.4|GAGEC2|GAGEE2|PAGE-2 HGNC:31804|MIM:300738|Ensembl:ENSG00000234068|HPRD:17565|Vega:OTTHUMG00000021648 X Xp11.21 P antigen family, member 2 (prostate associated) protein-coding PAGE2 P antigen family, member 2 (prostate associated) O G antigen family E member 2|G antigen, family C, 2|G antigen, family E, 2|prostate-associated gene 2 protein 20121230 -9606 203611 CDY2B - CDY HGNC:23921|Ensembl:ENSG00000129873|HPRD:16701|Vega:OTTHUMG00000041652 Y Yq11.222 chromodomain protein, Y-linked, 2B protein-coding CDY2B chromodomain protein, Y-linked, 2B O Y chromosome chromodomain protein 2B|chromodomain protein, Y chromosome, 2 related|testis-specific chromodomain protein Y 2|testis-specific chromodomain protein Y protein 2 related 20121209 -9606 203859 ANO5 - GDD1|LGMD2L|TMEM16E HGNC:27337|MIM:608662|Ensembl:ENSG00000171714|HPRD:10558|Vega:OTTHUMG00000166051 11 11p14.3 anoctamin 5 protein-coding ANO5 anoctamin 5 O anoctamin-5|gnathodiaphyseal dysplasia 1 protein|integral membrane protein GDD1|limb girdle muscular dystrophy 2L (autosomal recessive)|transmembrane protein 16E 20121230 -9606 203930 LOC203930 - - - 11 11q22.3 sorting nexin 7 pseudogene pseudo - - - - 20121230 -9606 204010 RPSAP52 - RPSA_17_1251 HGNC:35752 12 12q14.3 ribosomal protein SA pseudogene 52 pseudo RPSAP52 ribosomal protein SA pseudogene 52 O - 20121230 -9606 204219 CERS3 - LASS3 HGNC:23752|Ensembl:ENSG00000154227|HPRD:13961|Vega:OTTHUMG00000172568 15 15q26.3 ceramide synthase 3 protein-coding CERS3 ceramide synthase 3 O LAG1 homolog, ceramide synthase 3|LAG1 longevity assurance homolog 3 20121230 -9606 204474 PDILT - PDIA7 HGNC:27338|Ensembl:ENSG00000169340|HPRD:15111|Vega:OTTHUMG00000131487 16 16p12.3 protein disulfide isomerase-like, testis expressed protein-coding PDILT protein disulfide isomerase-like, testis expressed O protein disulfide isomerase family A, member 7|protein disulfide isomerase-like protein of the testis|protein disulfide-isomerase-like protein of the testis 20121230 -9606 204777 IGLJCOR18 - IGLJ-C/OR18|IGLJ-COR18 HGNC:28614|IMGT/GENE-DB:IGLJ-C/OR18 18 18p11.31 immunoglobulin lambda joining-constant/OR18 (pseudogene) pseudo IGLJCOR18 immunoglobulin lambda joining-constant/OR18 (pseudogene) O - 20121230 -9606 204800 LOC204800 - - - 19 19q13.41 actin related protein 2/3 complex, subunit 1A, 41kDa pseudogene pseudo - - - - 20121230 -9606 204801 NLRP11 - CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 HGNC:22945|MIM:609664|Ensembl:ENSG00000179873|HPRD:10110|Vega:OTTHUMG00000180921 19 19q13.43 NLR family, pyrin domain containing 11 protein-coding NLRP11 NLR family, pyrin domain containing 11 O NACHT, LRR and PYD containing protein 11|NACHT, LRR and PYD domains-containing protein 11|NACHT, leucine rich repeat and PYD containing 11|PAAD- and NACHT-containing protein 10|PAAD- and NACHT-containing protein 10B|PAAD-and NACHT domain-containing protein 10|PYRIN-containing APAF1-like protein 6|nucleotide-binding oligomerization domain protein 17|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 11 20121230 -9606 204851 HIPK1 RP4-786G8.2 Myak|Nbak2 HGNC:19006|MIM:608003|Ensembl:ENSG00000163349|HPRD:06418|Vega:OTTHUMG00000011983 1 1p13.2 homeodomain interacting protein kinase 1 protein-coding HIPK1 homeodomain interacting protein kinase 1 O homeodomain interacting protein kinase 1-like protein|homeodomain-interacting protein kinase 1|nuclear body associated kinase 2b|nuclear body-associated kinase 2 20121230 -9606 204962 SLC44A5 - CTL5 HGNC:28524|Ensembl:ENSG00000137968|HPRD:14580|Vega:OTTHUMG00000009721 1 1p31.1 solute carrier family 44, member 5 protein-coding SLC44A5 solute carrier family 44, member 5 O choline transporter-like protein 5 20121230 -9606 205147 AMER3 - FAM123C HGNC:26771|Ensembl:ENSG00000178171|HPRD:08241|Vega:OTTHUMG00000131637 2 2q21.1 APC membrane recruitment protein 3 protein-coding AMER3 APC membrane recruitment protein 3 O family with sequence similarity 123C|protein FAM123C 20121230 -9606 205251 LINC00116 - NCRNA00116 HGNC:27339|HPRD:14131 2 2q13 long intergenic non-protein coding RNA 116 miscRNA LINC00116 long intergenic non-protein coding RNA 116 O - 20121230 -9606 205272 CNN2P8 - - HGNC:39533 2 2q11.1 calponin 2 pseudogene 8 pseudo CNN2P8 calponin 2 pseudogene 8 O - 20121230 -9606 205327 C2orf69 - - HGNC:26799|Ensembl:ENSG00000178074|HPRD:08797|Vega:OTTHUMG00000154480 2 2q33.1 chromosome 2 open reading frame 69 protein-coding C2orf69 chromosome 2 open reading frame 69 O UPF0565 protein C2orf69 20121230 -9606 205428 C3orf58 - DIA1 HGNC:28490|MIM:612200|Ensembl:ENSG00000181744|HPRD:14559|Vega:OTTHUMG00000159380 3 3q24 chromosome 3 open reading frame 58 protein-coding C3orf58 chromosome 3 open reading frame 58 O Golgi protein GoPro49|UPF0672 protein C3orf58|deleted in autism 1|deleted in autism protein 1 20121230 -9606 205564 SENP5 FKSG45 - HGNC:28407|MIM:612845|Ensembl:ENSG00000119231|HPRD:10222|Vega:OTTHUMG00000155527 3 3q29 SUMO1/sentrin specific peptidase 5 protein-coding SENP5 SUMO1/sentrin specific peptidase 5 O SUMO1/sentrin specific protease 5|sentrin-specific protease 5|sentrin/SUMO-specific protease SENP5 20121230 -9606 205655 NBPF21P - - HGNC:32001 3 3p22.2 neuroblastoma breakpoint family, member 21, pseudogene pseudo NBPF21P neuroblastoma breakpoint family, member 21, pseudogene O - 20121230 -9606 205717 KIAA2018 hCG_1642841 - HGNC:30494|Ensembl:ENSG00000176542|HPRD:13912|Vega:OTTHUMG00000159322 3 3q13.2 KIAA2018 protein-coding KIAA2018 KIAA2018 O basic helix-loop-helix domain-containing protein KIAA2018 20121230 -9606 205860 TRIML2 - SPRYD6 HGNC:26378|Ensembl:ENSG00000179046|HPRD:08696|Vega:OTTHUMG00000160225 4 4q35.2 tripartite motif family-like 2 protein-coding TRIML2 tripartite motif family-like 2 O SPRY domain containing 6|SPRY domain-containing protein 6|probable E3 ubiquitin-protein ligase TRIML2|tripartite motif family-like protein 2 20121230 -9606 206338 AQPEP - APQ|LVRN MIM:610046|Ensembl:ENSG00000172901|HPRD:07118|Vega:OTTHUMG00000128890 5 5q23.1 laeverin protein-coding - - - AP-Q|CHL2 antigen|aminopeptidase Q 20121230 -9606 206358 SLC36A1 - Dct1|LYAAT1|PAT1|TRAMD3 HGNC:18761|MIM:606561|Ensembl:ENSG00000123643|HPRD:07584|Vega:OTTHUMG00000130125 5 5q33.1 solute carrier family 36 (proton/amino acid symporter), member 1 protein-coding SLC36A1 solute carrier family 36 (proton/amino acid symporter), member 1 O hPAT1|lysosomal amino acid transporter 1|proton-coupled amino acid transporter 1|proton/amino acid transporter 1|solute carrier family 36 member 1 20121230 -9606 206412 C6orf163 - - HGNC:21403|Ensembl:ENSG00000203872|HPRD:16659 6 6q15 chromosome 6 open reading frame 163 protein-coding C6orf163 chromosome 6 open reading frame 163 O uncharacterized protein C6orf163 20121230 -9606 206426 PIP5K1P1 - - HGNC:28372 6 6p24.3 phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1 pseudo PIP5K1P1 phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1 O - 20121230 -9606 207032 RPL36AP52 - dJ507I15.1 - X Xq27.1 ribosomal protein L36a pseudogene pseudo - - - - 20121230 -9606 207063 DHRSX RP11-325D5.2 CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1 HGNC:18399|Ensembl:ENSG00000169084|HPRD:16803|Vega:OTTHUMG00000021068 X|Y Xp22.33; Yp11.2 dehydrogenase/reductase (SDR family) X-linked protein-coding DHRSX dehydrogenase/reductase (SDR family) X-linked O dehydrogenase/reductase (SDR family) X chromosome|dehydrogenase/reductase (SDR family) Y-linked|dehydrogenase/reductase SDR family member on chromosome X|short chain dehydrogenase/reductase family 46C, member 1 20121230 -9606 207107 SFTA1P - SFTPF HGNC:18383 10 10p14 surfactant associated 1, pseudogene pseudo SFTA1P surfactant associated 1, pseudogene O - 20121230 -9606 207115 LATD - - MIM:601086 6 6p21 Laterality defects, autosomal dominant unknown - - - - 20110714 -9606 207147 TRY2P - - - 7 7q34 trypsinogen-like pseudogene pseudo - - - - 20121230 -9606 207148 TRY7 - - - 7 7q34 trypsinogen D pseudo - - - - 20121230 -9606 219285 SAMD9L - C7orf6|DRIF2|UEF1 HGNC:1349|MIM:611170|Ensembl:ENSG00000177409|HPRD:10798|Vega:OTTHUMG00000155807 7 7q21.2 sterile alpha motif domain containing 9-like protein-coding SAMD9L sterile alpha motif domain containing 9-like O SAM domain-containing protein 9-like|sterile alpha motif domain-containing protein 9-like 20121230 -9606 219287 AMER2 - FAM123A HGNC:26360|MIM:614659|Ensembl:ENSG00000165566|HPRD:08067|Vega:OTTHUMG00000016602 13 13q12.13 APC membrane recruitment protein 2 protein-coding AMER2 APC membrane recruitment protein 2 O family with sequence similarity 123A|protein FAM123A 20121230 -9606 219293 ATAD3C RP4-628J24.1 - HGNC:32151|Ensembl:ENSG00000215915|HPRD:13426|Vega:OTTHUMG00000000531 1 1p36.33 ATPase family, AAA domain containing 3C protein-coding ATAD3C ATPase family, AAA domain containing 3C O ATPase family AAA domain-containing protein 3C|ATPase family, AAA domain containing 3A 20121230 -9606 219333 USP12 - UBH1|USP12L1 HGNC:20485|Ensembl:ENSG00000152484|HPRD:15631|Vega:OTTHUMG00000016626 13 13q12.13 ubiquitin specific peptidase 12 protein-coding USP12 ubiquitin specific peptidase 12 O deubiquitinating enzyme 12|ubiquitin carboxyl-terminal hydrolase 12|ubiquitin specific protease 12 like 1|ubiquitin thioesterase 12|ubiquitin thiolesterase 12|ubiquitin-hydrolyzing enzyme 1|ubiquitin-specific-processing protease 12 20121230 -9606 219347 TMEM254-AS1 - - HGNC:27340 10 10q23.1 TMEM254 antisense RNA 1 miscRNA TMEM254-AS1 TMEM254 antisense RNA 1 O - 20121230 -9606 219348 PLAC9 RP11-369J21.8 - HGNC:19255|MIM:612857|Ensembl:ENSG00000189129|HPRD:18491|Vega:OTTHUMG00000018596 10 10q22.3 placenta-specific 9 protein-coding PLAC9 placenta-specific 9 O placenta-specific protein 9 20121230 -9606 219402 MTIF3 DC38 IF3mt HGNC:29788|Ensembl:ENSG00000122033|HPRD:17609|Vega:OTTHUMG00000016633 13 13q12.2 mitochondrial translational initiation factor 3 protein-coding MTIF3 mitochondrial translational initiation factor 3 O IF-3(Mt)|translation initiation factor IF-3, mitochondrial 20121230 -9606 219409 GSX1 - GSH1|Gsh-1 HGNC:20374|Ensembl:ENSG00000169840|HPRD:11016|Vega:OTTHUMG00000016637 13 13q12.2 GS homeobox 1 protein-coding GSX1 GS homeobox 1 O GS homeo box protein 1|genomic screened homeo box 1|homeobox protein Gsh-1 20121230 -9606 219417 OR8U1 - - HGNC:19611|Ensembl:ENSG00000172199|HPRD:17796|Vega:OTTHUMG00000166860 11 11q12.1 olfactory receptor, family 8, subfamily U, member 1 protein-coding OR8U1 olfactory receptor, family 8, subfamily U, member 1 O olfactory receptor 8U1 20121230 -9606 219428 OR4C16 - OR11-135 HGNC:15172|Ensembl:ENSG00000181935|HPRD:17721|Vega:OTTHUMG00000165198 11 11q11 olfactory receptor, family 4, subfamily C, member 16 protein-coding OR4C16 olfactory receptor, family 4, subfamily C, member 16 O olfactory receptor 4C16|olfactory receptor OR11-135 20121230 -9606 219429 OR4C11 - OR11-136|OR4C11P HGNC:15167|Ensembl:ENSG00000172188|HPRD:14961|Vega:OTTHUMG00000165290 11 11q11 olfactory receptor, family 4, subfamily C, member 11 protein-coding OR4C11 olfactory receptor, family 4, subfamily C, member 11 O olfactory receptor 4C11|olfactory receptor OR11-136|olfactory receptor, family 4, subfamily C, member 11 pseudogene 20121230 -9606 219431 OR4S2 - OR11-137|OR4S2P|OST725 HGNC:15183|Ensembl:ENSG00000174982|HPRD:14988|Vega:OTTHUMG00000166799 11 11q11 olfactory receptor, family 4, subfamily S, member 2 protein-coding OR4S2 olfactory receptor, family 4, subfamily S, member 2 O olfactory receptor 4S2|olfactory receptor OR11-137|olfactory receptor, family 4, subfamily S, member 2 pseudogene 20121230 -9606 219432 OR4C6 - OR11-138 HGNC:14743|Ensembl:ENSG00000181903|HPRD:17724|Vega:OTTHUMG00000166800 11 11q11 olfactory receptor, family 4, subfamily C, member 6 protein-coding OR4C6 olfactory receptor, family 4, subfamily C, member 6 O olfactory receptor 4C6|olfactory receptor OR11-138 20121230 -9606 219436 OR5D14 - OR11-141|OR11-150 HGNC:15281|Ensembl:ENSG00000186113|HPRD:17756|Vega:OTTHUMG00000166809 11 11q11 olfactory receptor, family 5, subfamily D, member 14 protein-coding OR5D14 olfactory receptor, family 5, subfamily D, member 14 O olfactory receptor 5D14|olfactory receptor OR11-141|olfactory receptor OR11-150 20121230 -9606 219437 OR5L1 - OR11-151|OST262 HGNC:8350|Ensembl:ENSG00000186117|HPRD:15045|Vega:OTTHUMG00000166810 11 11q11 olfactory receptor, family 5, subfamily L, member 1 protein-coding OR5L1 olfactory receptor, family 5, subfamily L, member 1 O olfactory receptor 5L1|olfactory receptor OR11-151 20121230 -9606 219438 OR5D18 - OR11-143 HGNC:15285|Ensembl:ENSG00000186119|HPRD:17758|Vega:OTTHUMG00000166811 11 11q11 olfactory receptor, family 5, subfamily D, member 18 protein-coding OR5D18 olfactory receptor, family 5, subfamily D, member 18 O olfactory receptor 5D18|olfactory receptor OR11-143|olfactory receptor OR11-152 20121230 -9606 219445 OR7E5P - OR11-12|OR11-156|OR7F5P HGNC:8435 11 11q12.1 olfactory receptor, family 7, subfamily E, member 5 pseudogene pseudo OR7E5P olfactory receptor, family 7, subfamily E, member 5 pseudogene O - 20121230 -9606 219447 OR5AS1 - OR11-168 HGNC:15261|Ensembl:ENSG00000181785|HPRD:17751|Vega:OTTHUMG00000166830 11 11q12.1 olfactory receptor, family 5, subfamily AS, member 1 protein-coding OR5AS1 olfactory receptor, family 5, subfamily AS, member 1 O olfactory receptor 5AS1|olfactory receptor OR11-168 20121230 -9606 219453 OR8K5 - OR11-174 HGNC:15315|Ensembl:ENSG00000181752|HPRD:17795|Vega:OTTHUMG00000166820 11 11q12.1 olfactory receptor, family 8, subfamily K, member 5 protein-coding OR8K5 olfactory receptor, family 8, subfamily K, member 5 O olfactory receptor 8K5|olfactory receptor OR11-174 20121230 -9606 219464 OR5T2 - OR11-177 HGNC:15296|Ensembl:ENSG00000181718|HPRD:15051|Vega:OTTHUMG00000166851 11 11q12.1 olfactory receptor, family 5, subfamily T, member 2 protein-coding OR5T2 olfactory receptor, family 5, subfamily T, member 2 O olfactory receptor 5T2|olfactory receptor OR11-177 20121230 -9606 219469 OR8H1 - OR11-180 HGNC:14824|Ensembl:ENSG00000181693|HPRD:17791|Vega:OTTHUMG00000162671 11 11q12.1 olfactory receptor, family 8, subfamily H, member 1 protein-coding OR8H1 olfactory receptor, family 8, subfamily H, member 1 O olfactory receptor 8H1|olfactory receptor OR11-180 20121230 -9606 219473 OR8K3 - OR11-181 HGNC:15313|Ensembl:ENSG00000181689|HPRD:17794|Vega:OTTHUMG00000166855 11 11q12.1 olfactory receptor, family 8, subfamily K, member 3 protein-coding OR8K3 olfactory receptor, family 8, subfamily K, member 3 O olfactory receptor 8K3|olfactory receptor OR11-181 20121230 -9606 219477 OR8J1 - OR11-183 HGNC:14855|Ensembl:ENSG00000172487|HPRD:17793|Vega:OTTHUMG00000166859 11 11q12.1 olfactory receptor, family 8, subfamily J, member 1 protein-coding OR8J1 olfactory receptor, family 8, subfamily J, member 1 O olfactory receptor 8J1|olfactory receptor OR11-183 20121230 -9606 219479 OR5R1 - OR11-185|OR5R1P HGNC:14841|Ensembl:ENSG00000174942|HPRD:15049|Vega:OTTHUMG00000154219 11 11q12.1 olfactory receptor, family 5, subfamily R, member 1 protein-coding OR5R1 olfactory receptor, family 5, subfamily R, member 1 O olfactory receptor 5R1|olfactory receptor OR11-185|olfactory receptor, family 5, subfamily R, member 1 pseudogene 20121230 -9606 219482 OR5M3 - OR11-191 HGNC:14806|Ensembl:ENSG00000174937|HPRD:17767|Vega:OTTHUMG00000166875 11 11q12.1 olfactory receptor, family 5, subfamily M, member 3 protein-coding OR5M3 olfactory receptor, family 5, subfamily M, member 3 O olfactory receptor 5M3|olfactory receptor OR11-191 20121230 -9606 219484 OR5M8 - OR11-194 HGNC:14846|Ensembl:ENSG00000181371|HPRD:17768|Vega:OTTHUMG00000166877 11 11q12.1 olfactory receptor, family 5, subfamily M, member 8 protein-coding OR5M8 olfactory receptor, family 5, subfamily M, member 8 O olfactory receptor 5M8|olfactory receptor OR11-194 20121230 -9606 219487 OR5M11 - OR11-199 HGNC:15291|Ensembl:ENSG00000255223|HPRD:17766|Vega:OTTHUMG00000166861 11 11q12.1 olfactory receptor, family 5, subfamily M, member 11 protein-coding OR5M11 olfactory receptor, family 5, subfamily M, member 11 O olfactory receptor 5M11|olfactory receptor OR11-199 pseudogene 20121230 -9606 219493 OR5AR1 - OR11-209 HGNC:15260|Ensembl:ENSG00000172459|HPRD:17750|Vega:OTTHUMG00000154213 11 11q12.1 olfactory receptor, family 5, subfamily AR, member 1 protein-coding OR5AR1 olfactory receptor, family 5, subfamily AR, member 1 O olfactory receptor 5AR1|olfactory receptor OR11-209 20121230 -9606 219525 OR5AK4P - PJCG3 HGNC:15253 11 11q12.1 olfactory receptor, family 5, subfamily AK, member 4 pseudogene pseudo OR5AK4P olfactory receptor, family 5, subfamily AK, member 4 pseudogene O - 20121230 -9606 219527 LRRC55 - - HGNC:32324|Ensembl:ENSG00000183908|HPRD:16990|Vega:OTTHUMG00000159309 11 11q12.1 leucine rich repeat containing 55 protein-coding LRRC55 leucine rich repeat containing 55 O BK channel auxilliary gamma snit LRRC55|leucine-rich repeat-containing protein 55 20121230 -9606 219537 SMTNL1 - CHASM HGNC:32394|MIM:613664|Ensembl:ENSG00000214872|Vega:OTTHUMG00000167046 11 11q12.1 smoothelin-like 1 protein-coding SMTNL1 smoothelin-like 1 O calponin homology-associated smooth muscle protein|smoothelin-like protein 1 20121230 -9606 219539 YPEL4 - - HGNC:18328|MIM:609725|Ensembl:ENSG00000166793|HPRD:08081|Vega:OTTHUMG00000167138 11 11q12.1 yippee-like 4 (Drosophila) protein-coding YPEL4 yippee-like 4 (Drosophila) O protein yippee-like 4 20121230 -9606 219541 MED19 - DT2P1G7|LCMR1 HGNC:29600|MIM:612385|Ensembl:ENSG00000156603|HPRD:17477|Vega:OTTHUMG00000167199 11 11q12.1 mediator complex subunit 19 protein-coding MED19 mediator complex subunit 19 O lung cancer metastasis-related protein 1|mediator of RNA polymerase II transcription subunit 19|mediator of RNA polymerase II transcription, subunit 19 homolog 20121230 -9606 219557 C7orf62 - - HGNC:22402|Ensembl:ENSG00000164645|HPRD:14507|Vega:OTTHUMG00000153859 7 7q21.13 chromosome 7 open reading frame 62 protein-coding C7orf62 chromosome 7 open reading frame 62 O uncharacterized protein C7orf62 20121230 -9606 219578 ZNF804B - - HGNC:21958|Ensembl:ENSG00000182348|HPRD:08721|Vega:OTTHUMG00000131037 7 7q21.13 zinc finger protein 804B protein-coding ZNF804B zinc finger protein 804B O zinc finger 804B 20121230 -9606 219595 FOLH1B GIG26 FOLH2|FOLHP|GCP3|GCPIII|PSM|PSMA-LIKE|PSMAL HGNC:13636|MIM:609020|HPRD:07150 11 11q14.3 folate hydrolase 1B protein-coding FOLH1B folate hydrolase 1B O N-acetylated-alpha-linked-acidic dipeptidase|NAALADase|cell growth-inhibiting gene 26 protein|folate hydrolase 2|folate hydrolase pseudogene|glutamate carboxypeptidase III|prostate-specific membrane antigen-like protein|putative N-acetylated-alpha-linked acidic dipeptidase|putative folate hydrolase 1B 20121230 -9606 219621 C10orf107 RP11-63A2.1 bA63A2.1 HGNC:28678|Ensembl:ENSG00000183346|HPRD:12559|Vega:OTTHUMG00000018295 10 10q21.2 chromosome 10 open reading frame 107 protein-coding C10orf107 chromosome 10 open reading frame 107 O uncharacterized protein C10orf107 20121230 -9606 219623 TMEM26 - - HGNC:28550|Ensembl:ENSG00000196932|HPRD:15534|Vega:OTTHUMG00000018293 10 10q21.2 transmembrane protein 26 protein-coding TMEM26 transmembrane protein 26 O - 20121230 -9606 219654 ZCCHC24 RP11-342M3.6 C10orf56 HGNC:26911|Ensembl:ENSG00000165424|HPRD:08299|Vega:OTTHUMG00000018561 10 10q22.3 zinc finger, CCHC domain containing 24 protein-coding ZCCHC24 zinc finger, CCHC domain containing 24 O zinc finger CCHC domain-containing protein 24 20121230 -9606 219670 ENKUR RP11-165A20.2 C10orf63 HGNC:28388|MIM:611025|Ensembl:ENSG00000151023|HPRD:12583|Vega:OTTHUMG00000017827 10 10p12.1 enkurin, TRPC channel interacting protein protein-coding ENKUR enkurin, TRPC channel interacting protein O enkurin 20121230 -9606 219681 ARMC3 RP11-300B11.1 CT81|KU-CT-1 HGNC:30964|MIM:611226|Ensembl:ENSG00000165309|HPRD:12487|Vega:OTTHUMG00000017811 10 10p12.31 armadillo repeat containing 3 protein-coding ARMC3 armadillo repeat containing 3 O armadillo repeat-containing protein 3|beta-catenin-like protein|cancer/testis antigen 81 20121230 -9606 219688 LOC219688 - - - 10 10p12.33 uncharacterized LOC219688 protein-coding - - - - 20120508 -9606 219690 LOC219690 - - - 10 10q22.2 uncharacterized LOC219690 miscRNA - - - - 20120508 -9606 219699 UNC5B RP11-58O1.1 UNC5H2|p53RDL1 HGNC:12568|MIM:607870|Ensembl:ENSG00000107731|HPRD:08487|Vega:OTTHUMG00000018422 10 10q22.1 unc-5 homolog B (C. elegans) protein-coding UNC5B unc-5 homolog B (C. elegans) O netrin receptor UNC5B|p53-regulated receptor for death and life protein 1|protein unc-5 homolog 2|protein unc-5 homolog B|transmembrane receptor Unc5H2|unc-5 homolog 2 20121230 -9606 219731 PROSER2-AS1 - - HGNC:27343 10 10p14 PROSER2 antisense RNA 1 miscRNA PROSER2-AS1 PROSER2 antisense RNA 1 O - 20121230 -9606 219736 STOX1 RP11-314J18.7 C10orf24|PEE4 HGNC:23508|MIM:609397|Ensembl:ENSG00000165730|HPRD:18579|Vega:OTTHUMG00000018367 10 10q22.1 storkhead box 1 protein-coding STOX1 storkhead box 1 O storkhead-box protein 1|winged-helix domain-containing protein 20121230 -9606 219738 C10orf35 RP11-343J3.9 - HGNC:23519|Ensembl:ENSG00000171224|HPRD:12573|Vega:OTTHUMG00000018383 10 10q22.1 chromosome 10 open reading frame 35 protein-coding C10orf35 chromosome 10 open reading frame 35 O uncharacterized protein C10orf35 20121230 -9606 219743 TYSND1 - NET41 HGNC:28531|MIM:611017|Ensembl:ENSG00000156521|HPRD:15593|Vega:OTTHUMG00000018397 10 10q22.1 trypsin domain containing 1 protein-coding TYSND1 trypsin domain containing 1 O peroxisomal leader peptide-processing protease|trypsin domain-containing protein 1 20121230 -9606 219749 ZNF25 - KOX19|Zfp9 HGNC:13043|MIM:194528|Ensembl:ENSG00000175395|HPRD:01916|Vega:OTTHUMG00000019344 10 10p11.1 zinc finger protein 25 protein-coding ZNF25 zinc finger protein 25 O zinc finger protein 25 (KOX 19)|zinc finger protein KOX19 20121230 -9606 219752 TACC1P1 - - HGNC:44974 10 10p11.21 transforming, acidic coiled-coil containing protein 1 pseudogene 1 pseudo TACC1P1 transforming, acidic coiled-coil containing protein 1 pseudogene 1 O - 20121230 -9606 219770 GJD4 - CX40.1|RP11-425A6.2 HGNC:23296|MIM:611922|Ensembl:ENSG00000177291|HPRD:13103|Vega:OTTHUMG00000017957 10 10p11.21 gap junction protein, delta 4, 40.1kDa protein-coding GJD4 gap junction protein, delta 4, 40.1kDa O connexin 40.1|connexin-40.1|connexin40.1|gap junction delta-4 protein 20121230 -9606 219771 CCNY - C10orf9|CBCP1|CCNX|CFP1 HGNC:23354|MIM:612786|Ensembl:ENSG00000108100|HPRD:10700|Vega:OTTHUMG00000017955 10 10p11.21 cyclin Y protein-coding CCNY cyclin Y O cyc-Y|cyclin box protein 1|cyclin fold protein 1|cyclin-X|cyclin-Y|cyclin-box carrying protein 1 20121230 -9606 219790 RTKN2 RP11-531F24.1 PLEKHK1|bA531F24.1 HGNC:19364|Ensembl:ENSG00000182010|HPRD:17863|Vega:OTTHUMG00000018299 10 10q21.2 rhotekin 2 protein-coding RTKN2 rhotekin 2 O PH domain-containing family K member 1|pleckstrin homology domain containing, family K member 1|pleckstrin homology domain-containing family K member 1|rhotekin-2 20121230 -9606 219793 TBATA RP11-399N22.4 C10orf27|spatial HGNC:23511|MIM:612640|Ensembl:ENSG00000166220|HPRD:08500|Vega:OTTHUMG00000018413 10 10q22.1 thymus, brain and testes associated protein-coding TBATA thymus, brain and testes associated O protein SPATIAL|protein TBATA|stromal protein associated with thymii and lymph node homolog|thymus, brain and testes-associated protein 20121230 -9606 219833 C11orf45 - - HGNC:28584|Ensembl:ENSG00000174370|HPRD:11344|Vega:OTTHUMG00000165796 11 11q24.3 chromosome 11 open reading frame 45 protein-coding C11orf45 chromosome 11 open reading frame 45 O putative uncharacterized protein C11orf45 20121230 -9606 219844 HYLS1 - HLS HGNC:26558|MIM:610693|Ensembl:ENSG00000198331|HPRD:08148|Vega:OTTHUMG00000165858 11 11q24.2 hydrolethalus syndrome 1 protein-coding HYLS1 hydrolethalus syndrome 1 O hydrolethalus syndrome protein 1 20121230 -9606 219854 TMEM218 - - HGNC:27344|Ensembl:ENSG00000150433|Vega:OTTHUMG00000165880 11 11q24.2 transmembrane protein 218 protein-coding TMEM218 transmembrane protein 218 O - 20121230 -9606 219855 SLC37A2 - pp11662 HGNC:20644|Ensembl:ENSG00000134955|HPRD:15380|Vega:OTTHUMG00000165879 11 11q24.2 solute carrier family 37 (glycerol-3-phosphate transporter), member 2 protein-coding SLC37A2 solute carrier family 37 (glycerol-3-phosphate transporter), member 2 O solute carrier family 37 member 2|sugar phosphate exchanger 2 20121230 -9606 219858 OR8B12 - OR11-317 HGNC:15307|Ensembl:ENSG00000170953|HPRD:17785|Vega:OTTHUMG00000165922 11 11q24.2 olfactory receptor, family 8, subfamily B, member 12 protein-coding OR8B12 olfactory receptor, family 8, subfamily B, member 12 O olfactory receptor 8B12|olfactory receptor OR11-317 20121230 -9606 219865 OR8G5 - OR11-298|OR8G5P|OR8G6 HGNC:19622|HPRD:17790 11 11q24.2 olfactory receptor, family 8, subfamily G, member 5 protein-coding OR8G5 olfactory receptor, family 8, subfamily G, member 5 O olfactory receptor 8G5|olfactory receptor 8G6|olfactory receptor OR11-298|olfactory receptor, family 8, subfamily G, member 5 pseudogene|olfactory receptor, family 8, subfamily G, member 6 20121230 -9606 219869 OR10G8 - OR11-274|OR11-282 HGNC:14845|Ensembl:ENSG00000234560|HPRD:17665|Vega:OTTHUMG00000165968 11 11q24.2 olfactory receptor, family 10, subfamily G, member 8 protein-coding OR10G8 olfactory receptor, family 10, subfamily G, member 8 O olfactory receptor 10G8|olfactory receptor OR11-274 pseudogene|olfactory receptor OR11-282 20121230 -9606 219870 OR10G9 - OR10G10P HGNC:15129|Ensembl:ENSG00000236981|HPRD:17666|Vega:OTTHUMG00000165967 11 11q24.1 olfactory receptor, family 10, subfamily G, member 9 protein-coding OR10G9 olfactory receptor, family 10, subfamily G, member 9 O olfactory receptor 10G10|olfactory receptor 10G9|olfactory receptor OR11-272 20121230 -9606 219873 OR10S1 - OR11-279 HGNC:14807|Ensembl:ENSG00000196248|HPRD:17675|Vega:OTTHUMG00000165963 11 11q24.1 olfactory receptor, family 10, subfamily S, member 1 protein-coding OR10S1 olfactory receptor, family 10, subfamily S, member 1 O olfactory receptor 10S1|olfactory receptor OR11-279 20121230 -9606 219874 OR6T1 - OR11-277 HGNC:14848|Ensembl:ENSG00000181499|HPRD:15069|Vega:OTTHUMG00000165962 11 11q24.1 olfactory receptor, family 6, subfamily T, member 1 protein-coding OR6T1 olfactory receptor, family 6, subfamily T, member 1 O olfactory receptor 6T1|olfactory receptor OR11-277 20121230 -9606 219875 OR4D5 - OR11-276 HGNC:14852|Ensembl:ENSG00000171014|HPRD:17726|Vega:OTTHUMG00000165961 11 11q24.1 olfactory receptor, family 4, subfamily D, member 5 protein-coding OR4D5 olfactory receptor, family 4, subfamily D, member 5 O olfactory receptor 4D5|olfactory receptor OR11-276 20121230 -9606 219899 TBCEL - El|LRRC35 HGNC:28115|MIM:610451|Ensembl:ENSG00000154114|HPRD:11302|Vega:OTTHUMG00000166061 11 11q23.3 tubulin folding cofactor E-like protein-coding TBCEL tubulin folding cofactor E-like O E-like|catastrophin|leucine rich repeat containing 35|leucine-rich repeat-containing protein 35|tubulin-specific chaperone cofactor E-like protein|tubulin-specific chaperone e-like 20121230 -9606 219902 TMEM136 - - HGNC:28280|Ensembl:ENSG00000181264|HPRD:14461|Vega:OTTHUMG00000166142 11 11q23.3 transmembrane protein 136 protein-coding TMEM136 transmembrane protein 136 O - 20121230 -9606 219927 MRPL21 - L21mt|MRP-L21 HGNC:14479|MIM:611834|Ensembl:ENSG00000197345|HPRD:14747|Vega:OTTHUMG00000167893 11 11q13.3 mitochondrial ribosomal protein L21 protein-coding MRPL21 mitochondrial ribosomal protein L21 O 39S ribosomal protein L21, mitochondrial 20121230 -9606 219931 TPCN2 - SHEP10|TPC2 HGNC:20820|MIM:612163|Ensembl:ENSG00000162341|HPRD:18218|Vega:OTTHUMG00000167898 11 11q13.3 two pore segment channel 2 protein-coding TPCN2 two pore segment channel 2 O two pore calcium channel protein 2|two-pore calcium channel protein 2|voltage-dependent calcium channel protein TPC2 20121230 -9606 219938 SPATA19 - CT132|SPAS1|spergen1 HGNC:30614|MIM:609805|Ensembl:ENSG00000166118|HPRD:11594|Vega:OTTHUMG00000167120 11 11q25 spermatogenesis associated 19 protein-coding SPATA19 spermatogenesis associated 19 O cancer/testis antigen 132|spergen 1|spergen-1|spermatogenesis-associated protein 19, mitochondrial|spermatogenic cell-specific gene 1 protein|spermatogenic specific-gene1 20121230 -9606 219952 OR6Q1 - OR11-226 HGNC:15302|Ensembl:ENSG00000172381|HPRD:15068|Vega:OTTHUMG00000168831 11 11q12.1 olfactory receptor, family 6, subfamily Q, member 1 protein-coding OR6Q1 olfactory receptor, family 6, subfamily Q, member 1 O olfactory receptor 6Q1|olfactory receptor OR11-226 20121230 -9606 219954 OR9I1 - OR11-228 HGNC:14718|Ensembl:ENSG00000172377|HPRD:17799|Vega:OTTHUMG00000167404 11 11q12.1 olfactory receptor, family 9, subfamily I, member 1 protein-coding OR9I1 olfactory receptor, family 9, subfamily I, member 1 O olfactory receptor 9I1|olfactory receptor OR11-228 20121230 -9606 219956 OR9Q1 - - HGNC:14724|Ensembl:ENSG00000186509|HPRD:17800|Vega:OTTHUMG00000167413 11 11q12.1 olfactory receptor, family 9, subfamily Q, member 1 protein-coding OR9Q1 olfactory receptor, family 9, subfamily Q, member 1 O olfactory receptor 9Q1 20121230 -9606 219957 OR9Q2 - OR9Q2P HGNC:15328|Ensembl:ENSG00000186513|HPRD:17801|Vega:OTTHUMG00000167414 11 11q12.1 olfactory receptor, family 9, subfamily Q, member 2 protein-coding OR9Q2 olfactory receptor, family 9, subfamily Q, member 2 O olfactory receptor 9Q2|olfactory receptor, family 9, subfamily Q, member 2 pseudogene 20121230 -9606 219958 OR1S2 - OR11-231 HGNC:15141|Ensembl:ENSG00000197887|HPRD:14927|Vega:OTTHUMG00000167541 11 11q12.1 olfactory receptor, family 1, subfamily S, member 2 protein-coding OR1S2 olfactory receptor, family 1, subfamily S, member 2 O olfactory receptor 1S2|olfactory receptor OR11-231 20121230 -9606 219959 OR1S1 - OR11-232|OST034 HGNC:8227|Ensembl:ENSG00000172774|HPRD:17690|Vega:OTTHUMG00000167463 11 11q12.1 olfactory receptor, family 1, subfamily S, member 1 protein-coding OR1S1 olfactory receptor, family 1, subfamily S, member 1 O olfactory receptor 1S1|olfactory receptor OR11-232 20121230 -9606 219960 OR10Q1 - OR11-233 HGNC:15134|Ensembl:ENSG00000180475|HPRD:17673|Vega:OTTHUMG00000167542 11 11q12.1 olfactory receptor, family 10, subfamily Q, member 1 protein-coding OR10Q1 olfactory receptor, family 10, subfamily Q, member 1 O olfactory receptor 10Q1|olfactory receptor OR11-233 20121230 -9606 219965 OR5B17 - OR11-237|OR5B20P HGNC:15267|Ensembl:ENSG00000197786|HPRD:15036|Vega:OTTHUMG00000167465 11 11q12.1 olfactory receptor, family 5, subfamily B, member 17 protein-coding OR5B17 olfactory receptor, family 5, subfamily B, member 17 O olfactory receptor 5B17|olfactory receptor 5B20|olfactory receptor OR11-237|olfactory receptor, family 5, subfamily B, member 20 pseudogene 20121230 -9606 219968 OR5B21 - - HGNC:19616|Ensembl:ENSG00000198283|HPRD:17753|Vega:OTTHUMG00000167519 11 11q12.1 olfactory receptor, family 5, subfamily B, member 21 protein-coding OR5B21 olfactory receptor, family 5, subfamily B, member 21 O olfactory receptor 5B21 20121230 -9606 219970 GLYATL2 - BXMAS2-10|GATF-B HGNC:24178|MIM:614762|Ensembl:ENSG00000156689|HPRD:16568|Vega:OTTHUMG00000167432 11 11q12.1 glycine-N-acyltransferase-like 2 protein-coding GLYATL2 glycine-N-acyltransferase-like 2 O acyl-CoA:glycine N-acyltransferase-like protein 2|glycine N-acyltransferase-like protein 2|glycine acyltransferase family-B 20121230 -9606 219972 MPEG1 - MPG1|MPS1|Mpg-1 HGNC:29619|MIM:610390|Ensembl:ENSG00000197629|Vega:OTTHUMG00000162676 11 11q12.1 macrophage expressed 1 protein-coding MPEG1 macrophage expressed 1 O macrophage expressed gene 1|macrophage gene 1 protein|macrophage-expressed gene 1 protein 20121230 -9606 219981 OR5A2 - - HGNC:15249|Ensembl:ENSG00000172324|HPRD:15029|Vega:OTTHUMG00000167419 11 11q12.1 olfactory receptor, family 5, subfamily A, member 2 protein-coding OR5A2 olfactory receptor, family 5, subfamily A, member 2 O olfactory receptor 5A2|olfactory receptor OR11-248 20121230 -9606 219982 OR5A1 - OR11-249|OR5A1P|OST181 HGNC:8319|Ensembl:ENSG00000172320|HPRD:15028|Vega:OTTHUMG00000167339 11 11q12.1 olfactory receptor, family 5, subfamily A, member 1 protein-coding OR5A1 olfactory receptor, family 5, subfamily A, member 1 O olfactory receptor 5A1|olfactory receptor OR11-249|olfactory receptor, family 5, subfamily A, member 1 pseudogene 20121230 -9606 219983 OR4D6 - OR11-250 HGNC:15175|Ensembl:ENSG00000166884|HPRD:17727|Vega:OTTHUMG00000167340 11 11q12.1 olfactory receptor, family 4, subfamily D, member 6 protein-coding OR4D6 olfactory receptor, family 4, subfamily D, member 6 O olfactory receptor 4D6|olfactory receptor OR11-250 20121230 -9606 219986 OR4D11 - OR4D11P HGNC:15174|Ensembl:ENSG00000176200|HPRD:17725|Vega:OTTHUMG00000167342 11 11q12.1 olfactory receptor, family 4, subfamily D, member 11 protein-coding OR4D11 olfactory receptor, family 4, subfamily D, member 11 O olfactory receptor 4D11|olfactory receptor OR11-252 pseudogene|olfactory receptor, family 4, subfamily D, member 11 pseudogene 20121230 -9606 219988 PATL1 OK/KNS-cl.5 Pat1b|hPat1b HGNC:26721|MIM:614660|Ensembl:ENSG00000166889|HPRD:08214|Vega:OTTHUMG00000167423 11 11q12.1 protein associated with topoisomerase II homolog 1 (yeast) protein-coding PATL1 protein associated with topoisomerase II homolog 1 (yeast) O PAT1-like protein 1|protein PAT1 homolog 1|protein PAT1 homolog b 20121230 -9606 219990 PLAC1L - TMEM122 HGNC:26699|Ensembl:ENSG00000149507|HPRD:08207|Vega:OTTHUMG00000167379 11 11q12.1 placenta-specific 1-like protein-coding PLAC1L placenta-specific 1-like O placenta-specific 1-like protein|transmembrane protein 122 20121230 -9606 219995 MS4A15 hCG_1659319 - HGNC:28573|Ensembl:ENSG00000166961|HPRD:17532|Vega:OTTHUMG00000167688 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 15 protein-coding MS4A15 membrane-spanning 4-domains, subfamily A, member 15 O membrane-spanning 4-domains subfamily A member 15 20121230 -9606 220001 VWCE - URG11|VWC1 HGNC:26487|MIM:611115|Ensembl:ENSG00000167992|HPRD:08116|Vega:OTTHUMG00000168208 11 11q12.2 von Willebrand factor C and EGF domains protein-coding VWCE von Willebrand factor C and EGF domains O HBV X protein up-regulated gene 11 protein|HBxAg up-regulated gene 11 protein|von Willebrand factor C and EGF domain-containing protein 20121230 -9606 220002 CYBASC3 PSEC0259 LCYTB HGNC:23014|Ensembl:ENSG00000162144|HPRD:11316|Vega:OTTHUMG00000157187 11 11q12.2 cytochrome b, ascorbate dependent 3 protein-coding CYBASC3 cytochrome b, ascorbate dependent 3 O cytochrome b ascorbate-dependent protein 3|lysosomal cytochrome b 20121230 -9606 220004 PPP1R32 - C11orf66|IIIG9 HGNC:28869|Ensembl:ENSG00000162148|HPRD:16933|Vega:OTTHUMG00000168176 11 11q12.2 protein phosphatase 1, regulatory subunit 32 protein-coding PPP1R32 protein phosphatase 1, regulatory subunit 32 O protein phosphatase 1 regulatory subunit 32 20121230 -9606 220032 GDPD4 - GDE6 HGNC:24849|Ensembl:ENSG00000178795|HPRD:17320|Vega:OTTHUMG00000165136 11 11q13.5 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding GDPD4 glycerophosphodiester phosphodiesterase domain containing 4 O GDPD domain containing protein|glycerophosphodiester phosphodiesterase 6|glycerophosphodiester phosphodiesterase domain-containing protein 4|ugpQ 20121230 -9606 220042 C11orf82 - noxin HGNC:26351|Ensembl:ENSG00000165490|HPRD:08062|Vega:OTTHUMG00000166929 11 11q14.1 chromosome 11 open reading frame 82 protein-coding C11orf82 chromosome 11 open reading frame 82 O nitric oxide-inducible gene protein 20121230 -9606 220047 CCDC83 HSD9 - HGNC:28535|Ensembl:ENSG00000150676|HPRD:14586|Vega:OTTHUMG00000166978 11 11q14.1-q14.2 coiled-coil domain containing 83 protein-coding CCDC83 coiled-coil domain containing 83 O coiled-coil domain-containing protein 83 20121230 -9606 220064 ORAOV1 - TAOS1 HGNC:17589|MIM:607224|Ensembl:ENSG00000149716|HPRD:06245|Vega:OTTHUMG00000167885 11 11q13.3 oral cancer overexpressed 1 protein-coding ORAOV1 oral cancer overexpressed 1 O oral cancer overexpressed protein 1-A|oral cancer-overexpressed protein 1|tumor-amplified and overexpressed sequence 1 20121230 -9606 220070 SHANK2-AS3 - C11orf76 HGNC:25098|HPRD:14132 11 11q13.4 SHANK2 antisense RNA 3 miscRNA SHANK2-AS3 SHANK2 antisense RNA 3 O - 20121230 -9606 220074 LRTOMT PP7517 DFNB63|LRRC51 HGNC:25033|MIM:612414|Ensembl:ENSG00000184154|HPRD:11839|Vega:OTTHUMG00000154887 11 11q13.4 leucine rich transmembrane and 0-methyltransferase domain containing protein-coding LRTOMT leucine rich transmembrane and 0-methyltransferase domain containing O transmembrane O-methyltransferase 20121230 -9606 220077 LOC220077 - - - 11 11q13.4 dedicator of cytokinesis 1 pseudogene pseudo - - - - 20121230 -9606 220081 FAM194B - - HGNC:26523|Ensembl:ENSG00000165837|HPRD:08729|Vega:OTTHUMG00000016856 13 13q14.13 family with sequence similarity 194, member B protein-coding FAM194B family with sequence similarity 194, member B O protein FAM194B 20121230 -9606 220082 SPERT - CBY2|NURIT HGNC:30720|Ensembl:ENSG00000174015|HPRD:14856|Vega:OTTHUMG00000016861 13 13q14.13 spermatid associated protein-coding SPERT spermatid associated O chibby homolog 2|novel leucine zipper testicular protein|protein chibby homolog 2|spermatid flower-like structure protein|spermatid-associated protein|testis specific leucine zipper protein nurit|testis-specific leucine zipper protein nurit 20121230 -9606 220107 DLEU7 - - HGNC:17567|Ensembl:ENSG00000186047|HPRD:16825|Vega:OTTHUMG00000016936 13 13q14.3 deleted in lymphocytic leukemia, 7 protein-coding DLEU7 deleted in lymphocytic leukemia, 7 O leukemia-associated protein 7 20121230 -9606 220108 FAM124A RP11-457D13.2 - HGNC:26413|Ensembl:ENSG00000150510|HPRD:08704|Vega:OTTHUMG00000016942 13 13q14.3 family with sequence similarity 124A protein-coding FAM124A family with sequence similarity 124A O protein FAM124A 20121230 -9606 220112 CTAGE3P - CTAGE-3|CTAGE3 HGNC:24348|MIM:608857 13 13q14.3 CTAGE family, member 3, pseudogene pseudo CTAGE3P CTAGE family, member 3, pseudogene O - 20121230 -9606 220115 TPTE2P3 - TPTEps1 HGNC:27345 13 13q14.3 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 pseudo TPTE2P3 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 O - 20121230 -9606 220134 SKA1 - C18orf24 HGNC:28109|Ensembl:ENSG00000154839|HPRD:12689|Vega:OTTHUMG00000132685 18 18q21.1 spindle and kinetochore associated complex subunit 1 protein-coding SKA1 spindle and kinetochore associated complex subunit 1 O spindle and KT (kinetochore) associated 1|spindle and kinetochore-associated protein 1 20121230 -9606 220136 CCDC11 - HTX6 HGNC:26530|MIM:614759|Ensembl:ENSG00000172361|HPRD:09958|Vega:OTTHUMG00000132668 18 18q21.1 coiled-coil domain containing 11 protein-coding CCDC11 coiled-coil domain containing 11 O coiled-coil domain-containing protein 11 20121230 -9606 220147 LOC220147 - - - 18 18q21.32 C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 220158 GTSCR1 - - HGNC:18406 18 18q22.2 Gilles de la Tourette syndrome chromosome region, candidate 1 unknown GTSCR1 Gilles de la Tourette syndrome chromosome region, candidate 1 O - 20120610 -9606 220164 DOK6 - DOK5L|HsT3226 HGNC:28301|MIM:611402|Ensembl:ENSG00000206052|HPRD:13244|Vega:OTTHUMG00000178688 18 18q22.2 docking protein 6 protein-coding DOK6 docking protein 6 O downstream of tyrosine kinase 6 20121230 -9606 220202 ATOH7 - Math5|bHLHa13 HGNC:13907|MIM:609875|Ensembl:ENSG00000179774|HPRD:09812|Vega:OTTHUMG00000018346 10 10q21.3|10q21.3-q22.1 atonal homolog 7 (Drosophila) protein-coding ATOH7 atonal homolog 7 (Drosophila) O class A basic helix-loop-helix protein 13|helix-loop-helix protein hATH-5|protein atonal homolog 7 20121230 -9606 220213 OTUD1 - DUBA7|OTDC1 HGNC:27346|MIM:612022|Ensembl:ENSG00000165312|Vega:OTTHUMG00000017819 10 10p12.2 OTU domain containing 1 protein-coding OTUD1 OTU domain containing 1 O DUBA-7|OTU domain-containing protein 1 20121230 -9606 220296 HEPACAM - GlialCAM|MLC2A|MLC2B HGNC:26361|MIM:611642|Ensembl:ENSG00000165478|HPRD:08068|Vega:OTTHUMG00000165938 11 11q24.2 hepatic and glial cell adhesion molecule protein-coding HEPACAM hepatic and glial cell adhesion molecule O hepatocyte cell adhesion molecule|protein hepaCAM 20121230 -9606 220323 OAF - NS5ATP13TP2 HGNC:28752|Ensembl:ENSG00000184232|HPRD:17646|Vega:OTTHUMG00000166139 11 11q23.3 OAF homolog (Drosophila) protein-coding OAF OAF homolog (Drosophila) O HCV NS5A-transactivated protein 13 target protein 2|out at first protein homolog 20121230 -9606 220359 TIGD3 - - HGNC:18334|Ensembl:ENSG00000173825|HPRD:18187|Vega:OTTHUMG00000165986 11 11q13.1 tigger transposable element derived 3 protein-coding TIGD3 tigger transposable element derived 3 O tigger transposable element-derived protein 3 20121230 -9606 220382 FAM181B - - HGNC:28512|Ensembl:ENSG00000182103|HPRD:14575|Vega:OTTHUMG00000166869 11 11q14.1 family with sequence similarity 181, member B protein-coding FAM181B family with sequence similarity 181, member B O protein FAM181B 20121230 -9606 220388 CCDC89 - - HGNC:26762|Ensembl:ENSG00000179071|HPRD:08234|Vega:OTTHUMG00000166976 11 11q14.1 coiled-coil domain containing 89 protein-coding CCDC89 coiled-coil domain containing 89 O bc8 orange-interacting protein|coiled-coil domain-containing protein 89 20121230 -9606 220416 LRRC63 RP11-139H14.4 - HGNC:34296|Ensembl:ENSG00000173988|HPRD:18580|Vega:OTTHUMG00000016866 13 13q14.13 leucine rich repeat containing 63 protein-coding LRRC63 leucine rich repeat containing 63 O RP11-139H14.4|leucine-rich repeat-containing protein 63 20121230 -9606 220429 CTAGE10P - - HGNC:37288 13 13q14.2 CTAGE family, member 10, pseudogene pseudo CTAGE10P CTAGE family, member 10, pseudogene O - 20121230 -9606 220433 RPS4XP16 - RPS4P16|RPS4X_8_1313 HGNC:36365 13 13q14.3 ribosomal protein S4X pseudogene 16 pseudo RPS4XP16 ribosomal protein S4X pseudogene 16 O - 20121230 -9606 220441 RNF152 - - HGNC:26811|Ensembl:ENSG00000176641|HPRD:11514|Vega:OTTHUMG00000132774 18 18q21.33 ring finger protein 152 protein-coding RNF152 ring finger protein 152 O E3 ubiquitin-protein ligase RNF152 20121230 -9606 220594 USP32P2 - TL132 HGNC:30751|HPRD:17321 17 17p11.2 ubiquitin specific peptidase 32 pseudogene 2 pseudo USP32P2 ubiquitin specific peptidase 32 pseudogene 2 O - 20121230 -9606 220717 RPLP0P6 - RPLP0_2_209 HGNC:36404 2 2p22.1 ribosomal protein, large, P0 pseudogene 6 pseudo RPLP0P6 ribosomal protein, large, P0 pseudogene 6 O - 20121230 -9606 220729 LOC220729 - - - 3 3q29 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene pseudo - - - - 20121230 -9606 220786 CDK7PS - - HGNC:18614 2 2q24.1 cyclin-dependent kinase 7 pseudogene pseudo CDK7PS cyclin-dependent kinase 7 pseudogene O - 20121230 -9606 220793 FUNDC2P1 - FUNDC2P HGNC:17253 5 5q13.2 FUN14 domain containing 2 pseudogene 1 pseudo FUNDC2P1 FUN14 domain containing 2 pseudogene 1 O - 20121230 -9606 220832 FABP5P3 - FABP5L3 HGNC:22573 7 7q36.1 fatty acid binding protein 5 pseudogene 3 pseudo FABP5P3 fatty acid binding protein 5 pseudogene 3 O - 20121230 -9606 220869 CBWD5 RP11-460E7.3 DC36 HGNC:24584|Ensembl:ENSG00000147996|HPRD:14134|Vega:OTTHUMG00000013336 9 9q21.11 COBW domain containing 5 protein-coding CBWD5 COBW domain containing 5 O COBW domain-containing protein 5|COBW-like placental protein|cobalamin synthase W domain-containing protein 5|cobalamin synthetase W domain-containing protein 5|dopamine responsive protein 20121230 -9606 220885 RPSAP15 - LAMR1P15|LAMRL5|RPSA_25_1791 HGNC:31464 X Xq21.31 ribosomal protein SA pseudogene 15 pseudo RPSAP15 ribosomal protein SA pseudogene 15 O - 20121230 -9606 220906 WAC-AS1 - - HGNC:27347 10 10p11.23 WAC antisense RNA 1 (head to head) miscRNA WAC-AS1 WAC antisense RNA 1 (head to head) O - 20121230 -9606 220929 ZNF438 RP11-330O11.1 bA330O11.1 HGNC:21029|Ensembl:ENSG00000183621|HPRD:11247|Vega:OTTHUMG00000017904 10 10p11.23 zinc finger protein 438 protein-coding ZNF438 zinc finger protein 438 O - 20121230 -9606 220930 ZEB1-AS1 - - HGNC:42354 10 10p11.22 ZEB1 antisense RNA 1 miscRNA ZEB1-AS1 ZEB1 antisense RNA 1 O - 20121230 -9606 220959 KRT8P16 - - HGNC:33368 10 10p14 keratin 8 pseudogene 16 pseudo KRT8P16 keratin 8 pseudogene 16 O - 20121230 -9606 220963 SLC16A9 - C10orf36|MCT9 HGNC:23520|MIM:614242|Ensembl:ENSG00000165449|HPRD:15348|Vega:OTTHUMG00000018283 10 10q21.2 solute carrier family 16, member 9 (monocarboxylic acid transporter 9) protein-coding SLC16A9 solute carrier family 16, member 9 (monocarboxylic acid transporter 9) O MCT 9|monocarboxylate transporter 9|solute carrier family 16 (monocarboxylic acid transporters), member 9|solute carrier family 16 member 9 20121230 -9606 220965 FAM13C RP11-443O13.2 FAM13C1 HGNC:19371|Ensembl:ENSG00000148541|HPRD:16875|Vega:OTTHUMG00000018277 10 10q21.1 family with sequence similarity 13, member C protein-coding FAM13C family with sequence similarity 13, member C O family with sequence similarity 13, member C1|protein FAM13C 20121230 -9606 220972 MARCH8 RP11-67C2.1 MARCH-VIII|MIR|RNF178|c-MIR HGNC:23356|MIM:613335|Ensembl:ENSG00000165406|HPRD:17466|Vega:OTTHUMG00000019345 10 10q11.21 membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase protein-coding MARCH8 membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase O E3 ubiquitin-protein ligase MARCH8|RING finger protein 178|c-mir, cellular modulator of immune recognition|cellular modulator of immune recognition (c-MIR)|membrane-associated RING finger protein 8|membrane-associated RING-CH protein VIII 20121230 -9606 220974 OR6D1P - OR6D2P HGNC:14849 10 10q11.21 olfactory receptor, family 6, subfamily D, member 1 pseudogene pseudo OR6D1P olfactory receptor, family 6, subfamily D, member 1 pseudogene O - 20121230 -9606 220979 C10orf25 RP11-285G1.11-001 - HGNC:23509|Ensembl:ENSG00000165511|Vega:OTTHUMG00000018066 10 10q11.21 chromosome 10 open reading frame 25 protein-coding C10orf25 chromosome 10 open reading frame 25 O uncharacterized protein C10orf25 20121230 -9606 220980 TMEM72-AS1 - - HGNC:27349 10 10q11.21 TMEM72 antisense RNA 1 miscRNA TMEM72-AS1 TMEM72 antisense RNA 1 O - 20121230 -9606 220988 HNRNPA3 - 2610510D13Rik|D10S102|FBRNP|HNRPA3 HGNC:24941|MIM:605372|Ensembl:ENSG00000170144|Vega:OTTHUMG00000132529 2 2q31.2 heterogeneous nuclear ribonucleoprotein A3 protein-coding HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 O hnRNP A3 20121230 -9606 220992 ZNF485 - - HGNC:23440|Ensembl:ENSG00000198298|HPRD:15800|Vega:OTTHUMG00000018040 10 10q11.21 zinc finger protein 485 protein-coding ZNF485 zinc finger protein 485 O Zinc finger protein 93 (Zinc finger protein HTF34) 20121230 -9606 221002 RASGEF1A - CG4853 HGNC:24246|MIM:614531|Ensembl:ENSG00000198915|HPRD:15211|Vega:OTTHUMG00000018025 10 10q11.21 RasGEF domain family, member 1A protein-coding RASGEF1A RasGEF domain family, member 1A O CG4853 gene product|ras-GEF domain-containing family member 1A 20121230 -9606 221016 CCDC7 RP11-195O1.4 BioT2-A|BioT2-B|BioT2-C|RP11-479G22.1 HGNC:26533|Ensembl:ENSG00000216937|HPRD:10812|Vega:OTTHUMG00000150517 10 10p11.22 coiled-coil domain containing 7 protein-coding CCDC7 coiled-coil domain containing 7 O coiled-coil domain-containing protein 7 20121230 -9606 221017 CEP57L1P1 - C10orf37|C6orf182P HGNC:23521 10 10q22.1 centrosomal protein 57kDa-like 1 pseudogene 1 pseudo CEP57L1P1 centrosomal protein 57kDa-like 1 pseudogene 1 O - 20121230 -9606 221035 REEP3 RP11-439F7.1 C10orf74 HGNC:23711|MIM:609348|Ensembl:ENSG00000165476|HPRD:16582|Vega:OTTHUMG00000018318 10 10q21.3 receptor accessory protein 3 protein-coding REEP3 receptor accessory protein 3 O receptor expression enhancing protein 3|receptor expression-enhancing protein 3 20121230 -9606 221037 JMJD1C RP11-144G16.3 RP11-10C13.2|TRIP8 HGNC:12313|MIM:604503|Ensembl:ENSG00000171988|HPRD:05141|Vega:OTTHUMG00000018311 10 10q21.3 jumonji domain containing 1C protein-coding JMJD1C jumonji domain containing 1C O TR-interacting protein 8|TRIP-8|jumonji domain-containing protein 1C|probable JmjC domain-containing histone demethylation protein 2C|thyroid hormone receptor interactor 8|thyroid receptor interacting protein 8|thyroid receptor-interacting protein 8 20121230 -9606 221044 UCMA - C10orf49|GRP HGNC:25205|Ensembl:ENSG00000165623|HPRD:12578|Vega:OTTHUMG00000017692 10 10p13 upper zone of growth plate and cartilage matrix associated protein-coding UCMA upper zone of growth plate and cartilage matrix associated O Gla-rich protein|unique cartilage matrix-associated protein 20121230 -9606 221060 C10orf111 - bA455B2.4 HGNC:28582|Ensembl:ENSG00000176236|HPRD:16572|Vega:OTTHUMG00000017727 10 10p13 chromosome 10 open reading frame 111 protein-coding C10orf111 chromosome 10 open reading frame 111 O uncharacterized protein C10orf111 20121230 -9606 221061 FAM171A1 RP11-455B2.10-002 C10orf38 HGNC:23522|Ensembl:ENSG00000148468|HPRD:18581|Vega:OTTHUMG00000017732 10 10p13 family with sequence similarity 171, member A1 protein-coding FAM171A1 family with sequence similarity 171, member A1 O astroprincin|protein FAM171A1 20121230 -9606 221074 SLC39A12 - LZT-Hs8|ZIP-12|bA570F3.1 HGNC:20860|MIM:608734|Ensembl:ENSG00000148482|HPRD:15384|Vega:OTTHUMG00000017759 10 10p12.33 solute carrier family 39 (zinc transporter), member 12 protein-coding SLC39A12 solute carrier family 39 (zinc transporter), member 12 O LIV-1 subfamily of ZIP zinc transporter 8|solute carrier family 39 (metal ion transporter), member 12|solute carrier family 39 member 12|zinc transporter ZIP12|zrt- and Irt-like protein 12 20121230 -9606 221078 NSUN6 - 4933414E04Rik|NOPD1 HGNC:23529|Ensembl:ENSG00000241058|HPRD:14843|Vega:OTTHUMG00000017767 10 10p12.31 NOP2/Sun domain family, member 6 protein-coding NSUN6 NOP2/Sun domain family, member 6 O NOL1/NOP2/Sun and PUA domain-containing protein 1|NOL1/NOP2/Sun domain family 6|NOL1/NOP2/Sun domain family member 6|NOL1/NOP2/Sun domain family, member 6|nucleolar protein (NOL1/NOP2/sun) and PUA domains 1|putative methyltransferase NSUN6 20121230 -9606 221079 ARL5B - ARL8 HGNC:23052|MIM:608909|Ensembl:ENSG00000165997|HPRD:12328|Vega:OTTHUMG00000017765 10 10p12.31 ADP-ribosylation factor-like 5B protein-coding ARL5B ADP-ribosylation factor-like 5B O ADP-ribosylation factor-like 8|ADP-ribosylation factor-like protein 5B|ADP-ribosylation factor-like protein 8|ADP-ribosylation-like factor 8 20121230 -9606 221091 LRRN4CL UNQ728/PRO1410 - HGNC:33724|Ensembl:ENSG00000177363|HPRD:17322|Vega:OTTHUMG00000167581 11 11q12.3 LRRN4 C-terminal like protein-coding LRRN4CL LRRN4 C-terminal like O LRRN4 C-terminal-like protein 20121230 -9606 221092 HNRNPUL2 - HNRPUL2|SAF-A2 HGNC:25451|Ensembl:ENSG00000214753|Vega:OTTHUMG00000167773 11 11q12.3 heterogeneous nuclear ribonucleoprotein U-like 2 protein-coding HNRNPUL2 heterogeneous nuclear ribonucleoprotein U-like 2 O heterogeneous nuclear ribonucleoprotein U-like protein 2|scaffold-attachment factor A2 20121230 -9606 221120 ALKBH3 - ABH3|DEPC-1|DEPC1|PCA1 HGNC:30141|MIM:610603|Ensembl:ENSG00000166199|HPRD:16793|Vega:OTTHUMG00000166417 11 11p11.2 alkB, alkylation repair homolog 3 (E. coli) protein-coding ALKBH3 alkB, alkylation repair homolog 3 (E. coli) O alkylated DNA repair protein alkB homolog 3|alpha-ketoglutarate-dependent dioxygenase alkB homolog 3|prostate cancer antigen 1|prostate cancer antigen-1 20121230 -9606 221122 LOC221122 - - - 11 11p11.2 uncharacterized LOC221122 miscRNA - - - - 20121230 -9606 221143 N6AMT2 - ESP13 HGNC:27351|Ensembl:ENSG00000150456|HPRD:14135|Vega:OTTHUMG00000016519 13 13q12.11 N-6 adenine-specific DNA methyltransferase 2 (putative) protein-coding N6AMT2 N-6 adenine-specific DNA methyltransferase 2 (putative) O N(6)-adenine-specific DNA methyltransferase 2 20121230 -9606 221150 SKA3 RP11-101P17.12-002 C13orf3|RAMA1 HGNC:20262|Ensembl:ENSG00000165480|HPRD:10706|Vega:OTTHUMG00000016539 13 13q12.11 spindle and kinetochore associated complex subunit 3 protein-coding SKA3 spindle and kinetochore associated complex subunit 3 O spindle and kinetochore-associated protein 3 20121230 -9606 221154 EFHA1 - 1110008L20Rik HGNC:31830|MIM:610632|Ensembl:ENSG00000165487|HPRD:16852|Vega:OTTHUMG00000067414 13 13q12.11 EF-hand domain family, member A1 protein-coding EFHA1 EF-hand domain family, member A1 O EF hand domain family A1|EF hand domain family, member A1|EF-hand domain-containing family member A1|Smhs2 homolog 20121230 -9606 221178 SPATA13 RP11-307N16.3 ARHGEF29|ASEF2 HGNC:23222|MIM:613324|Ensembl:ENSG00000182957|HPRD:15427|Vega:OTTHUMG00000016578 13 13q12.12 spermatogenesis associated 13 protein-coding SPATA13 spermatogenesis associated 13 O APC-stimulated guanine nucleotide exchange factor 2|adenomatous polyposis coli stimulated exchange factor 2|spermatogenesis-associated protein 13 20121230 -9606 221180 CYCSP33 - HCP33 HGNC:24407 13 13q12.12 cytochrome c, somatic pseudogene 33 pseudo CYCSP33 cytochrome c, somatic pseudogene 33 O - 20121230 -9606 221184 CPNE2 - COPN2|CPN2 HGNC:2315|MIM:604206|Ensembl:ENSG00000140848|HPRD:05015|Vega:OTTHUMG00000133471 16 16q13 copine II protein-coding CPNE2 copine II O copine-2 20121230 -9606 221188 GPR114 UNQ2524/PRO6017 PGR27 HGNC:19010|Ensembl:ENSG00000159618|HPRD:17056|Vega:OTTHUMG00000133461 16 16q21 G protein-coupled receptor 114 protein-coding GPR114 G protein-coupled receptor 114 O G protein-coupled receptor PGR27|G-protein coupled receptor 114|G-protein coupled receptor PGR27|probable G-protein coupled receptor 114 20121230 -9606 221191 PRSS54 - KLKBL4 HGNC:26336|Ensembl:ENSG00000103023|Vega:OTTHUMG00000173231 16 16q21 protease, serine, 54 protein-coding PRSS54 protease, serine, 54 O CT67|cancer/testis antigen 67|inactive serine protease 54|plasma kallikrein-like protein 4 20121230 -9606 221223 CES5A - CAUXIN|CES4C1|CES5|CES7 HGNC:26459|Ensembl:ENSG00000159398|HPRD:07016|Vega:OTTHUMG00000133236 16 16q12.2 carboxylesterase 5A protein-coding CES5A carboxylesterase 5A O carboxylesterase 5|carboxylesterase 7|carboxylesterase-like urinary excreted protein homolog 20121230 -9606 221241 LINC00305 - C18orf20|HsT1235|NCRNA00305 HGNC:28597|HPRD:16624 18 18q22.1 long intergenic non-protein coding RNA 305 miscRNA LINC00305 long intergenic non-protein coding RNA 305 O - 20121230 -9606 221262 CCDC162P RP11-425D10.3 C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7 HGNC:21565 6 6q21 coiled-coil domain containing 162, pseudogene pseudo CCDC162P coiled-coil domain containing 162, pseudogene O - 20121230 -9606 221264 AKD1 hCG_2030702 AKD2|C6orf199|C6orf224|RP1-70A9.1|dJ70A9.1 HGNC:33814|Ensembl:ENSG00000155085|HPRD:12871|Vega:OTTHUMG00000157658 6 6q21 adenylate kinase domain containing 1 protein-coding AKD1 adenylate kinase domain containing 1 O adenylate kinase domain containing 2|adenylate kinase domain-containing protein 1 20121230 -9606 221272 LOC221272 - - - 6 6q22.1 uncharacterized LOC221272 unknown - - - - 20120508 -9606 221294 NT5DC1 RP3-486I3.1 C6orf200|LP2642|NT5C2L1 HGNC:21556|Ensembl:ENSG00000178425|HPRD:14845|Vega:OTTHUMG00000015428 6 6q22.1 5'-nucleotidase domain containing 1 protein-coding NT5DC1 5'-nucleotidase domain containing 1 O 5'-nucleotidase domain-containing protein 1|5'-nucleotidase, cytosolic II-like 1 protein 20121230 -9606 221301 FAM26D RP3-493F7.4 C6orf78 HGNC:21094|Ensembl:ENSG00000164451|HPRD:12899|Vega:OTTHUMG00000015443 6 6q22.1 family with sequence similarity 26, member D protein-coding FAM26D family with sequence similarity 26, member D O protein FAM26D 20121230 -9606 221302 ZUFSP RP3-412I7.3 C6orf113|dJ412I7.3 HGNC:21224|Ensembl:ENSG00000153975|HPRD:12840|Vega:OTTHUMG00000015445 6 6q22.1 zinc finger with UFM1-specific peptidase domain protein-coding ZUFSP zinc finger with UFM1-specific peptidase domain O zinc finger with UFM1-specific peptidase domain protein 20121230 -9606 221303 FAM162B - C6orf189|bA86F4.2 HGNC:21549|Ensembl:ENSG00000183807|Vega:OTTHUMG00000015446 6 6q22.1 family with sequence similarity 162, member B protein-coding FAM162B family with sequence similarity 162, member B O protein FAM162B 20121230 -9606 221322 C6orf170 RP1-310J6.1 BROMI|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1 HGNC:21485|Ensembl:ENSG00000146350|HPRD:12867|Vega:OTTHUMG00000015474 6 6q22.31 chromosome 6 open reading frame 170 protein-coding C6orf170 chromosome 6 open reading frame 170 O bA301B7.2 (novel protein)|broad-minded homolog|dJ310J6.1 (novel protein)|protein broad-minded 20121230 -9606 221336 BEND6 RP11-203B9.5 C6orf65|bA203B9.1 HGNC:20871|Ensembl:ENSG00000151917|HPRD:12893|Vega:OTTHUMG00000014914 6 6p12.1 BEN domain containing 6 protein-coding BEND6 BEN domain containing 6 O BEN domain-containing protein 6 20121230 -9606 221357 GSTA5 - - HGNC:19662|MIM:607605|Ensembl:ENSG00000182793|HPRD:09620|Vega:OTTHUMG00000014857 6 6p12.2 glutathione S-transferase alpha 5 protein-coding GSTA5 glutathione S-transferase alpha 5 O GST class-alpha member 5|glutathione S-transferase A5|glutathione S-transferase A5-5|glutathione transferase A5 20121230 -9606 221391 OPN5 - GPR136|PGR12|TMEM13 HGNC:19992|MIM:609042|Ensembl:ENSG00000124818|HPRD:12358|Vega:OTTHUMG00000014803 6 6p12.3 opsin 5 protein-coding OPN5 opsin 5 O G-protein coupled receptor 136|neuropsin|opsin-5|transmembrane protein 13 20121230 -9606 221393 GPR115 - PGR18 HGNC:19011|MIM:614268|Ensembl:ENSG00000153294|HPRD:17057|Vega:OTTHUMG00000014800 6 6p12.3 G protein-coupled receptor 115 protein-coding GPR115 G protein-coupled receptor 115 O G-protein coupled receptor 115|G-protein coupled receptor PGR18|probable G-protein coupled receptor 115|seven transmembrane helix receptor 20121230 -9606 221395 GPR116 - KPG_001 HGNC:19030|Ensembl:ENSG00000069122|HPRD:11010|Vega:OTTHUMG00000014793 6 6p12.3 G protein-coupled receptor 116 protein-coding GPR116 G protein-coupled receptor 116 O Ig-Hepta homolog|probable G-protein coupled receptor 116 20121230 -9606 221400 TDRD6 RP11-446F17.4 CT41.2|NY-CO-45|SPATA36|TDR2|bA446F17.4 HGNC:21339|MIM:611200|Ensembl:ENSG00000180113|HPRD:18172|Vega:OTTHUMG00000014788 6 6p12.3 tudor domain containing 6 protein-coding TDRD6 tudor domain containing 6 O antigen NY-CO-45|cancer/testis antigen 41.2|spermatogenesis associated 36|tudor domain-containing protein 6|tudor repeat 2 20121230 -9606 221409 SPATS1 RP11-444E17.3 DDIP|SPATA8|SRSP1 HGNC:22957|Ensembl:ENSG00000249481|HPRD:10248|Vega:OTTHUMG00000014764 6 6p21.1 spermatogenesis associated, serine-rich 1 protein-coding SPATS1 spermatogenesis associated, serine-rich 1 O spermatogenesis-associated serine-rich protein 1 20121230 -9606 221416 C6orf223 - - HGNC:28692|Ensembl:ENSG00000181577|HPRD:14640|Vega:OTTHUMG00000014753 6 6p21.1 chromosome 6 open reading frame 223 protein-coding C6orf223 chromosome 6 open reading frame 223 O uncharacterized protein C6orf223 20121230 -9606 221421 RSPH9 RP1-261G23.3 C6orf206|CILD12|MRPS18AL1 HGNC:21057|MIM:612648|Ensembl:ENSG00000172426|HPRD:12875|Vega:OTTHUMG00000014746 6 6p21.1 radial spoke head 9 homolog (Chlamydomonas) protein-coding RSPH9 radial spoke head 9 homolog (Chlamydomonas) O radial spoke head protein 9 homolog 20121230 -9606 221424 LRRC73 RP3-337H4.2 C6orf154 HGNC:21375|Ensembl:ENSG00000204052|HPRD:10167|Vega:OTTHUMG00000014737 6 6p21.1 leucine rich repeat containing 73 protein-coding LRRC73 leucine rich repeat containing 73 O leucine-rich repeat-containing protein 73 20121230 -9606 221438 TREML5P - TLT5|TREML2P|TREML2P1 HGNC:30808 6 6p21.1 triggering receptor expressed on myeloid cells-like 5, pseudogene pseudo TREML5P triggering receptor expressed on myeloid cells-like 5, pseudogene O - 20121230 -9606 221442 ADCY10P1 - - HGNC:44143|HPRD:17323 6 6p21.1 adenylate cyclase 10 (soluble) pseudogene 1 pseudo ADCY10P1 adenylate cyclase 10 (soluble) pseudogene 1 O - 20121230 -9606 221443 OARD1 - C6orf130|dJ34B21.3 HGNC:21257|MIM:614393|Ensembl:ENSG00000124596|HPRD:12849|Vega:OTTHUMG00000014667 6 6p21.1 O-acyl-ADP-ribose deacylase 1 protein-coding OARD1 O-acyl-ADP-ribose deacylase 1 O O-acetyl-ADP-ribose deacetylase C6orf130 20121230 -9606 221458 KIF6 RP1-137F1.4 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 HGNC:21202|MIM:613919|Ensembl:ENSG00000164627|HPRD:10786|Vega:OTTHUMG00000014648 6 6p21.2 kinesin family member 6 protein-coding KIF6 kinesin family member 6 O kinesin-like protein KIF6 20121230 -9606 221468 TMEM217 - C6orf128|dJ355M6.2 HGNC:21238|Ensembl:ENSG00000172738|HPRD:12848|Vega:OTTHUMG00000014618 6 6p21.2 transmembrane protein 217 protein-coding TMEM217 transmembrane protein 217 O - 20121230 -9606 221472 FGD2 RP3-405J24.2 ZFYVE4 HGNC:3664|MIM:605091|Ensembl:ENSG00000146192|HPRD:05478|Vega:OTTHUMG00000014616 6 6p21.2 FYVE, RhoGEF and PH domain containing 2 protein-coding FGD2 FYVE, RhoGEF and PH domain containing 2 O FGD1 family, member 2|FLJ00276 protein|FYVE, RhoGEF and PH domain-containing protein 2|zinc finger FYVE domain-containing protein 4 20121230 -9606 221476 PI16 PSEC0164 CRISP9|MSMBBP|PSPBP HGNC:21245|Ensembl:ENSG00000164530|Vega:OTTHUMG00000014611 6 6p21.2 peptidase inhibitor 16 protein-coding PI16 peptidase inhibitor 16 O PSP94-binding protein|cysteine-rich secretory protein 9|microseminoprotein, beta-binding protein|protease inhibitor 16 20121230 -9606 221477 C6orf89 RP1-90K10.6 - HGNC:21114|Ensembl:ENSG00000198663|HPRD:12905|Vega:OTTHUMG00000014613 6 6p21.2 chromosome 6 open reading frame 89 protein-coding C6orf89 chromosome 6 open reading frame 89 O amfion|bombesin receptor-activated protein C6orf89 20121230 -9606 221481 ARMC12 - C6orf81 HGNC:21099|Ensembl:ENSG00000157343|HPRD:12901|Vega:OTTHUMG00000014577 6 6p21.31 armadillo repeat containing 12 protein-coding ARMC12 armadillo repeat containing 12 O armadillo repeat-containing protein 12 20121230 -9606 221491 C6orf1 - LBH HGNC:1340|MIM:611419|Ensembl:ENSG00000186577|HPRD:12834|Vega:OTTHUMG00000159754 6 6p21.31 chromosome 6 open reading frame 1 protein-coding C6orf1 chromosome 6 open reading frame 1 O uncharacterized protein C6orf1 20121230 -9606 221496 LEMD2 RP3-482C21.2 NET25|dJ482C21.1 HGNC:21244|Ensembl:ENSG00000161904|HPRD:13984|Vega:OTTHUMG00000014535 6 6p21.31 LEM domain containing 2 protein-coding LEMD2 LEM domain containing 2 O LEM domain-containing protein 2|hLEM2 20121230 -9606 221504 ZBTB9 DASS-97D12.7 ZNF919 HGNC:28323|Ensembl:ENSG00000213588|HPRD:15695|Vega:OTTHUMG00000140180 6 6p21.32 zinc finger and BTB domain containing 9 protein-coding ZBTB9 zinc finger and BTB domain containing 9 O zinc finger and BTB domain-containing protein 9 20121230 -9606 221527 ZBTB12 DADB-122G4.2 Bat9|C6orf46|D6S59E|G10|NG35 HGNC:19066|Ensembl:ENSG00000204366|HPRD:15691|Vega:OTTHUMG00000031169 6 6p21.33 zinc finger and BTB domain containing 12 protein-coding ZBTB12 zinc finger and BTB domain containing 12 O HLA-B-associated transcript 9|zinc finger and BTB domain-containing protein 12 20121230 -9606 221545 C6orf136 DADB-129D20.1 - HGNC:21301|Ensembl:ENSG00000204564|HPRD:12851|Vega:OTTHUMG00000031221 6 6p21.33 chromosome 6 open reading frame 136 protein-coding C6orf136 chromosome 6 open reading frame 136 O uncharacterized protein C6orf136 20121230 -9606 221547 RANP1 - Ras-like|TC4 HGNC:21631 6 6p21.33 RAN, member RAS oncogene family pseudogene 1 pseudo RANP1 RAN, member RAS oncogene family pseudogene 1 O - 20121230 -9606 221584 ZSCAN12P1 - ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7 HGNC:13850 6 6p22.1 zinc finger and SCAN domain containing 12 pseudogene 1 pseudo ZSCAN12P1 zinc finger and SCAN domain containing 12 pseudogene 1 O - 20121230 -9606 221613 HIST1H2AA - H2AA|H2AFR|bA317E16.2 HGNC:18729|MIM:613499|Ensembl:ENSG00000164508|HPRD:13653|Vega:OTTHUMG00000014407 6 6p22.2 histone cluster 1, H2aa protein-coding HIST1H2AA histone cluster 1, H2aa O H2A histone family, member R|histone 1, H2aa|histone H2A type 1-A|histone H2A/r 20121230 -9606 221656 KDM1B RP1-298J15.1 AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2 HGNC:21577|MIM:613081|Ensembl:ENSG00000165097|HPRD:18524|Vega:OTTHUMG00000014316 6 6p22.3 lysine (K)-specific demethylase 1B protein-coding KDM1B lysine (K)-specific demethylase 1B O amine oxidase (flavin containing) domain 1|amine oxidase, flavin containing 1|flavin-containing amine oxidase domain-containing protein 1|lysine-specific histone demethylase 1B|lysine-specific histone demethylase 2 20121230 -9606 221662 RBM24 - RNPC6|dJ259A10.1 HGNC:21539|Ensembl:ENSG00000112183|HPRD:15228|Vega:OTTHUMG00000014306 6 6p22.3 RNA binding motif protein 24 protein-coding RBM24 RNA binding motif protein 24 O RNA-binding motif protein 24|RNA-binding protein 24|RNA-binding region (RNP1, RRM) containing 6|RNA-binding region-containing protein 6 20121230 -9606 221687 RNF182 - - HGNC:28522|Ensembl:ENSG00000180537|HPRD:15264|Vega:OTTHUMG00000014280 6 6p23 ring finger protein 182 protein-coding RNF182 ring finger protein 182 O E3 ubiquitin-protein ligase RNF182 20121230 -9606 221692 PHACTR1 RP1-257A7.1 RPEL|RPEL1|dJ257A7.2 HGNC:20990|MIM:608723|Ensembl:ENSG00000112137|HPRD:12283|Vega:OTTHUMG00000014270 6 6p24.1 phosphatase and actin regulator 1 protein-coding PHACTR1 phosphatase and actin regulator 1 O RPEL repeat containing 1 20121230 -9606 221710 SMIM13 - C6orf228 HGNC:27356|Ensembl:ENSG00000224531|Vega:OTTHUMG00000014253 6 6p24.2 small integral membrane protein 13 protein-coding SMIM13 small integral membrane protein 13 O UPF0766 protein C6orf228 20121230 -9606 221711 SYCP2L - C6orf177|NO145|dJ62D2.1 HGNC:21537|Ensembl:ENSG00000153157|HPRD:11248|Vega:OTTHUMG00000014250 6 6p24.2 synaptonemal complex protein 2-like protein-coding SYCP2L synaptonemal complex protein 2-like O 145 kDa nucleolar protein homolog|SCP-2-like 20121230 -9606 221717 MRPL48P1 - MRPL48L1|dJ290I10.4 HGNC:21379 6 6p24.3 mitochondrial ribosomal protein L48 pseudogene 1 pseudo MRPL48P1 mitochondrial ribosomal protein L48 pseudogene 1 O - 20121230 -9606 221718 LINC00518 - C6orf218 HGNC:28626|HPRD:17554 6 6p24.3 long intergenic non-protein coding RNA 518 miscRNA LINC00518 long intergenic non-protein coding RNA 518 O - 20121230 -9606 221749 PXDC1 - C6orf145 HGNC:21361|Ensembl:ENSG00000168994|HPRD:12854|Vega:OTTHUMG00000014146 6 6p25.2 PX domain containing 1 protein-coding PXDC1 PX domain containing 1 O PX domain-containing protein 1|PX domain-containing protein C6orf145 20121230 -9606 221756 MGC39372 - - - 6 6p25.2 serpin peptidase inhibitor, clade B (ovalbumin), member 9 pseudogene pseudo - - - - 20121230 -9606 221785 ZNF498 - ZSCAN25 HGNC:21961|Ensembl:ENSG00000197037|HPRD:15807|Vega:OTTHUMG00000074055 7 7q22.1 zinc finger protein 498 protein-coding ZNF498 zinc finger protein 498 O zinc finger and SCAN domain containing 25|zinc finger and SCAN domain-containing protein 25 20121230 -9606 221786 FAM200A - C7orf38 HGNC:25401|Ensembl:ENSG00000221909|HPRD:13221|Vega:OTTHUMG00000156723 7 7q22.1 family with sequence similarity 200, member A protein-coding FAM200A family with sequence similarity 200, member A O protein FAM200A 20121230 -9606 221806 VWDE - - HGNC:21897|Ensembl:ENSG00000146530|Vega:OTTHUMG00000152315 7 7p21.3 von Willebrand factor D and EGF domains protein-coding VWDE von Willebrand factor D and EGF domains O von Willebrand factor D and EGF domain-containing protein 20121230 -9606 221814 LOC221814 - - - 7 7p21.3 uncharacterized LOC221814 protein-coding - - - - 20111113 -9606 221823 PRPS1L1 hCG_1643027 PRPS1|PRPS3|PRPSL|PRS-III HGNC:9463|MIM:611566|Ensembl:ENSG00000229937|HPRD:17914|Vega:OTTHUMG00000152742 7 7p21.1 phosphoribosyl pyrophosphate synthetase 1-like 1 protein-coding PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 O PRPS1-like 1|phosphoribosyl pyrophosphate synthase 1-like 1|phosphoribosyl pyrophosphate synthase III|phosphoribosylpyrophosphate synthetase subunit III|ribose-phosphate diphosphokinase catalytic chain III|ribose-phosphate pyrophosphokinase 3|ribose-phosphate pyrophosphokinase III 20121230 -9606 221830 TWISTNB - - HGNC:18027|MIM:608312|Ensembl:ENSG00000105849|HPRD:16311|Vega:OTTHUMG00000152497 7 7p21.1 TWIST neighbor protein-coding TWISTNB TWIST neighbor O DNA-directed RNA polymerase I subunit RPA43|twist neighbor protein 20121230 -9606 221833 SP8 - BTD HGNC:19196|MIM:608306|Ensembl:ENSG00000164651|HPRD:12208|Vega:OTTHUMG00000094788 7 7p21.2 Sp8 transcription factor protein-coding SP8 Sp8 transcription factor O specificity protein 8|transcription factor Sp8 20121230 -9606 221838 EEF1A1P6 - EEF1AL4 HGNC:3201 7 7p15.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 pseudo EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 O - 20121230 -9606 221883 HOXA11-AS tcag7.1238 HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|NCRNA00076 HGNC:24957|MIM:607530 7 7p15.2 HOXA11 antisense RNA miscRNA HOXA11-AS HOXA11 antisense RNA O - 20121230 -9606 221895 JAZF1 tcag7.981 TIP27|ZNF802 HGNC:28917|MIM:606246|Ensembl:ENSG00000153814|HPRD:09373|Vega:OTTHUMG00000128545 7 7p15.2-p15.1 JAZF zinc finger 1 protein-coding JAZF1 JAZF zinc finger 1 O TAK1-interacting protein 27|juxtaposed with another zinc finger gene 1|juxtaposed with another zinc finger protein 1|zinc finger protein 802 20121230 -9606 221908 PPP1R35 - C7orf47 HGNC:28320|Ensembl:ENSG00000160813|HPRD:14486|Vega:OTTHUMG00000159540 7 7q22.1 protein phosphatase 1, regulatory subunit 35 protein-coding PPP1R35 protein phosphatase 1, regulatory subunit 35 O UPF0683 protein C7orf47|protein phosphatase 1 regulatory subunit 35 20121230 -9606 221914 GPC2 - - HGNC:4450|Ensembl:ENSG00000213420|HPRD:17051|Vega:OTTHUMG00000154894 7 7q22.1 glypican 2 protein-coding GPC2 glypican 2 O cerebroglycan|glypican proteoglycan 2, cerebroglycan proteoglycan|glypican-2 20121230 -9606 221927 BRAT1 - BAAT1|C7orf27|RMFSL HGNC:21701|MIM:614506|Ensembl:ENSG00000106009|HPRD:12914|Vega:OTTHUMG00000119091 7 7p22.3 BRCA1-associated ATM activator 1 protein-coding BRAT1 BRCA1-associated ATM activator 1 O BRCA1-associated protein required for ATM activation protein 1|HEAT repeat-containing protein C7orf27 20121230 -9606 221935 SDK1 - - HGNC:19307|MIM:607216|Ensembl:ENSG00000146555|HPRD:07388|Vega:OTTHUMG00000151733 7 7p22.2 sidekick cell adhesion molecule 1 protein-coding SDK1 sidekick cell adhesion molecule 1 O protein sidekick-1|sidekick homolog 1, cell adhesion molecule 20121230 -9606 221937 FOXK1 - FOXK1L HGNC:23480|Ensembl:ENSG00000164916|HPRD:18750|Vega:OTTHUMG00000151739 7 7p22.1 forkhead box K1 protein-coding FOXK1 forkhead box K1 O MNF|forkhead box protein K1|myocyte nuclear factor 20121230 -9606 221938 MMD2 - PAQR10 HGNC:30133|MIM:614581|Ensembl:ENSG00000136297|HPRD:17578|Vega:OTTHUMG00000151844 7 7p22.1 monocyte to macrophage differentiation-associated 2 protein-coding MMD2 monocyte to macrophage differentiation-associated 2 O monocyte to macrophage differentiation factor 2|monocyte-to-macrophage differentiation factor 2|monocyte-to-macrophage differentiation-associated protein 2|progestin and adipoQ receptor family member 10|progestin and adipoQ receptor family member X 20121230 -9606 221946 LOC221946 - - - 7 7p22.2 uncharacterized LOC221946 miscRNA - - - - 20120508 -9606 221955 DAGLB tcag7.842 DAGLBETA|KCCR13L HGNC:28923|MIM:614016|Ensembl:ENSG00000164535|HPRD:17324|Vega:OTTHUMG00000125513 7 7p22.1 diacylglycerol lipase, beta protein-coding DAGLB diacylglycerol lipase, beta O DGL-beta|sn1-specific diacylglycerol lipase beta 20121230 -9606 221960 CCZ1B - C7orf28B|H_NH0577018.2 HGNC:21717|Ensembl:ENSG00000146574|HPRD:12916|Vega:OTTHUMG00000152441 7 7p22.1 CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) protein-coding CCZ1B CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) O H_DJ1163J12.2|vacuolar fusion protein CCZ1 homolog B 20121230 -9606 221981 THSD7A - - HGNC:22207|MIM:612249|Ensembl:ENSG00000005108|Vega:OTTHUMG00000152346 7 7p21.3 thrombospondin, type I, domain containing 7A protein-coding THSD7A thrombospondin, type I, domain containing 7A O thrombospondin type-1 domain-containing protein 7A 20121230 -9606 222005 SLC25A5P3 - ANTP1 HGNC:507 7 7p11.2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 3 pseudo SLC25A5P3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 3 O - 20121230 -9606 222008 VSTM2A tcag7.1200 VSTM2 HGNC:28499|Ensembl:ENSG00000170419|HPRD:14566|Vega:OTTHUMG00000129271 7 7p11.2 V-set and transmembrane domain containing 2A protein-coding VSTM2A V-set and transmembrane domain containing 2A O V-set and transmembrane domain containing 2|V-set and transmembrane domain-containing protein 2A|hypothetical protein MGC33530 20121230 -9606 222029 DKFZp434L192 - - - 7 7p11.2 uncharacterized protein DKFZp434L192 miscRNA - - - - 20121230 -9606 222052 TTC4P1 - TTC4P HGNC:12395 7 7p13 tetratricopeptide repeat domain 4 pseudogene 1 pseudo TTC4P1 tetratricopeptide repeat domain 4 pseudogene 1 O - 20121230 -9606 222068 TMED4 - ERS25|HNLF HGNC:22301|MIM:612038|Ensembl:ENSG00000158604|HPRD:13666|Vega:OTTHUMG00000129210 7 7p13 transmembrane emp24 protein transport domain containing 4 protein-coding TMED4 transmembrane emp24 protein transport domain containing 4 O GMP25iso|endoplasmic reticulum stress-response protein 25 kDa|p24 family protein alpha-3|p24alpha3|putative NF-kappa-B-activating protein 156|putative NFkB activating protein HNLF|transmembrane emp24 domain-containing protein 4 20121230 -9606 222161 DKFZP586I1420 - - - 7 7p14.3 uncharacterized protein DKFZp586I1420 pseudo - - - - 20121230 -9606 222166 C7orf41 - Ells1 HGNC:25457|Ensembl:ENSG00000180354|HPRD:07635|Vega:OTTHUMG00000128559 7 7p14.3 chromosome 7 open reading frame 41 protein-coding C7orf41 chromosome 7 open reading frame 41 O UPF0452 protein C7orf41|protein Ells1 20121230 -9606 222171 PRR15 - - HGNC:22310|Ensembl:ENSG00000176532|HPRD:14136|Vega:OTTHUMG00000128555 7 7p14.3 proline rich 15 protein-coding PRR15 proline rich 15 O proline-rich protein 15 20121230 -9606 222183 SRRM3 - - HGNC:26729|Ensembl:ENSG00000177679|HPRD:08219|Vega:OTTHUMG00000130489 7 7q11.23 serine/arginine repetitive matrix 3 protein-coding SRRM3 serine/arginine repetitive matrix 3 O SRRM2-like protein|serine/arginine repetitive matrix protein 3 20121230 -9606 222194 RSBN1L - - HGNC:24765|Ensembl:ENSG00000187257|HPRD:15278|Vega:OTTHUMG00000155517 7 7q11.23 round spermatid basic protein 1-like protein-coding RSBN1L round spermatid basic protein 1-like O round spermatid basic protein 1-like protein 20121230 -9606 222223 KIAA1324L - EIG121L HGNC:21945|MIM:614048|Ensembl:ENSG00000164659|HPRD:13405|Vega:OTTHUMG00000153995 7 7q21.12 KIAA1324-like protein-coding KIAA1324L KIAA1324-like O EIG121-like|UPF0577 protein KIAA1324-like|estrogen-induced gene 121-like protein 20121230 -9606 222229 LRWD1 - CENP-33|ORCA HGNC:21769|Ensembl:ENSG00000161036|HPRD:10904|Vega:OTTHUMG00000157718 7 7q22.1 leucine-rich repeats and WD repeat domain containing 1 protein-coding LRWD1 leucine-rich repeats and WD repeat domain containing 1 O ORC-associated protein|centromere protein 33|leucine-rich repeat and WD repeat-containing protein 1|origin recognition complex associated|origin recognition complex-associated protein 20121230 -9606 222234 FAM185A - - HGNC:22412|Ensembl:ENSG00000222011|HPRD:11343|Vega:OTTHUMG00000154140 7 7q22.1 family with sequence similarity 185, member A protein-coding FAM185A family with sequence similarity 185, member A O protein FAM185A 20121230 -9606 222235 FBXL13 - Fbl13 HGNC:21658|MIM:609080|Ensembl:ENSG00000161040|HPRD:12364|Vega:OTTHUMG00000157224 7 7q22.1 F-box and leucine-rich repeat protein 13 protein-coding FBXL13 F-box and leucine-rich repeat protein 13 O F-box/LRR-repeat protein 13 20121230 -9606 222236 NAPEPLD - FMP30|NAPE-PLD HGNC:21683|MIM:612334|Ensembl:ENSG00000161048|HPRD:14809|Vega:OTTHUMG00000157204 7 7q22.1 N-acyl phosphatidylethanolamine phospholipase D protein-coding NAPEPLD N-acyl phosphatidylethanolamine phospholipase D O N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D|NAPE-hydrolyzing phospholipase D 20121230 -9606 222255 ATXN7L1 tcag7.1150 ATXN7L4 HGNC:22210|Ensembl:ENSG00000146776|HPRD:12508|Vega:OTTHUMG00000157521 7 7q22.3 ataxin 7-like 1 protein-coding ATXN7L1 ataxin 7-like 1 O ataxin 7-like 4|ataxin-7-like protein 1|ataxin-7-like protein 4 20121230 -9606 222256 CDHR3 - CDH28 HGNC:26308|Ensembl:ENSG00000128536|HPRD:08042|Vega:OTTHUMG00000157520 7 7q22.3 cadherin-related family member 3 protein-coding CDHR3 cadherin-related family member 3 O cadherin-like protein 28 20121230 -9606 222344 LOC222344 - - - 10 10q22.1 TNF receptor-associated factor 6 protein-coding - - - - 20100404 -9606 222389 BEND7 - C10orf30 HGNC:23514|Ensembl:ENSG00000165626|HPRD:12570|Vega:OTTHUMG00000017699 10 10p13 BEN domain containing 7 protein-coding BEND7 BEN domain containing 7 O BEN domain-containing protein 7 20121230 -9606 222484 LNX2 - PDZRN1 HGNC:20421|MIM:609733|Ensembl:ENSG00000139517|HPRD:10042|Vega:OTTHUMG00000016634 13 13q12.2 ligand of numb-protein X 2 protein-coding LNX2 ligand of numb-protein X 2 O PDZ domain containing ring finger 1|PDZ domain-containing RING finger protein 1|ligand of Numb protein X 2|numb-binding protein 2 20121230 -9606 222487 GPR97 - PB99|PGR26 HGNC:13728|Ensembl:ENSG00000182885|HPRD:17073|Vega:OTTHUMG00000133458 16 16q21 G protein-coupled receptor 97 protein-coding GPR97 G protein-coupled receptor 97 O G-protein coupled receptor PGR26|probable G-protein coupled receptor 97 20121230 -9606 222537 HS3ST5 - 3-OST-5|3OST5|HS3OST5|NBLA04021 HGNC:19419|MIM:609407|Ensembl:ENSG00000249853|HPRD:13674 6 6q21 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 protein-coding HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 O h3-OST-5|heparan sulfate 3-O-sulfotransferase 5|heparan sulfate 3-OST-5|heparan sulfate D-glucosaminyl 3-O-sulfotransferase 5|heparan sulfate glucosamine 3-O-sulfotransferase 5 20121230 -9606 222545 GPRC6A - GPCR|bA86F4.3 HGNC:18510|MIM:613572|Ensembl:ENSG00000173612|HPRD:17074|Vega:OTTHUMG00000015447 6 6q22.1 G protein-coupled receptor, family C, group 6, member A protein-coding GPRC6A G protein-coupled receptor, family C, group 6, member A O G-protein coupled receptor GPCR33|G-protein coupled receptor family C group 6 member A|hGPCR33|hGPRC6A|predicted with SOSUI analysis|seven transmembrane helix receptor 20121230 -9606 222546 RFX6 RP5-955L16.1 MTFS|RFXDC1|dJ955L16.1 HGNC:21478|MIM:612659|Ensembl:ENSG00000185002|HPRD:11490|Vega:OTTHUMG00000015449 6 6q22.1 regulatory factor X, 6 protein-coding RFX6 regulatory factor X, 6 O DNA-binding protein RFX6|regulatory factor X domain-containing protein 1 20121230 -9606 222553 SLC35F1 RP1-230I3.1 C6orf169|dJ230I3.1 HGNC:21483|Ensembl:ENSG00000196376|HPRD:18751|Vega:OTTHUMG00000015460 6 6q22.31 solute carrier family 35, member F1 protein-coding SLC35F1 solute carrier family 35, member F1 O solute carrier family 35 member F1 20121230 -9606 222584 FAM83B - C6orf143 HGNC:21357|Ensembl:ENSG00000168143|HPRD:10158|Vega:OTTHUMG00000014899 6 6p12.1 family with sequence similarity 83, member B protein-coding FAM83B family with sequence similarity 83, member B O protein FAM83B 20121230 -9606 222611 GPR111 - PGR20|hGPCR35 HGNC:18991|Ensembl:ENSG00000164393|HPRD:17055|Vega:OTTHUMG00000046168 6 6p12.3 G protein-coupled receptor 111 protein-coding GPR111 G protein-coupled receptor 111 O G protein-coupled receptor PGR20|probable G-protein coupled receptor 111 20121230 -9606 222642 TSPO2 - BZRPL1 HGNC:21256|Ensembl:ENSG00000112212|HPRD:16569|Vega:OTTHUMG00000014666 6 6p21.1 translocator protein 2 protein-coding TSPO2 translocator protein 2 O benzodiazapine receptor (peripheral)-like 1|peripheral-type benzodiazepine receptor-like protein 1 20121230 -9606 222643 UNC5CL - MUXA|ZUD HGNC:21203|Ensembl:ENSG00000124602|HPRD:09844|Vega:OTTHUMG00000014665 6 6p21.1 unc-5 homolog C (C. elegans)-like protein-coding UNC5CL unc-5 homolog C (C. elegans)-like O UNC5C-like protein|ZU5 and death domain containing|protein unc-5 homolog C-like 20121230 -9606 222658 KCTD20 RP1-108K11.2 C6orf69|dJ108K11.3 HGNC:21052|Ensembl:ENSG00000112078|HPRD:12895|Vega:OTTHUMG00000014597 6 6p21.31 potassium channel tetramerisation domain containing 20 protein-coding KCTD20 potassium channel tetramerisation domain containing 20 O BTB/POZ domain-containing protein KCTD20 20121230 -9606 222659 PXT1 - STEPP HGNC:18312|Ensembl:ENSG00000179165|HPRD:17937|Vega:OTTHUMG00000159815 6 6p21.31 peroxisomal, testis specific 1 protein-coding PXT1 peroxisomal, testis specific 1 O peroxisomal testis-specific protein 1|small testis-specific peroxisomal protein 20121230 -9606 222662 LHFPL5 - DFNB67|TMHS|dJ510O8.8 HGNC:21253|MIM:609427|Ensembl:ENSG00000197753|HPRD:13989|Vega:OTTHUMG00000014584 6 6p21.31 lipoma HMGIC fusion partner-like 5 protein-coding LHFPL5 lipoma HMGIC fusion partner-like 5 O LHFP-like protein 5|lipoma HMGIC fusion partner-like 5 protein|tetraspan membrane protein of hair cell stereocilia 20121230 -9606 222663 SCUBE3 - CEGF3 HGNC:13655|MIM:614708|Ensembl:ENSG00000146197|HPRD:18031|Vega:OTTHUMG00000014562 6 6p21.3 signal peptide, CUB domain, EGF-like 3 protein-coding SCUBE3 signal peptide, CUB domain, EGF-like 3 O CUB and EGF containing protein 3|CUB domain and EGF-like repeat containing 3|signal peptide, CUB and EGF-like domain containing protein 3|signal peptide, CUB and EGF-like domain-containing protein 3 20121230 -9606 222696 ZSCAN23 - ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1 HGNC:21193|Ensembl:ENSG00000187987|Vega:OTTHUMG00000016346 6 6p22.1 zinc finger and SCAN domain containing 23 protein-coding ZSCAN23 zinc finger and SCAN domain containing 23 O zinc finger and SCAN domain-containing protein 23|zinc finger protein 390|zinc finger protein 453 20121230 -9606 222698 NKAPL - C6orf194|bA424I5.1 HGNC:21584|Ensembl:ENSG00000189134|HPRD:16664|Vega:OTTHUMG00000014517 6 6p22.1 NFKB activating protein-like protein-coding NKAPL NFKB activating protein-like O NKAP-like protein 20121230 -9606 222699 TOB2P1 - TOB2P|TOB4p|p373c6.3 HGNC:13986 6 6p22.1 transducer of ERBB2, 2 pseudogene 1 pseudo TOB2P1 transducer of ERBB2, 2 pseudogene 1 O - 20121230 -9606 222701 ZNF192P2 - - HGNC:42862 6 6p22.1 zinc finger protein 192 pseudogene 2 pseudo ZNF192P2 zinc finger protein 192 pseudogene 2 O - 20121230 -9606 222826 FAM217A RP5-1013A10.4 C6orf146 HGNC:21362|Ensembl:ENSG00000145975|HPRD:10789|Vega:OTTHUMG00000014159 6 6p25.2 family with sequence similarity 217, member A protein-coding FAM217A family with sequence similarity 217, member A O protein FAM217A|uncharacterized protein C6orf146 20121230 -9606 222865 TMEM130 UNQ719/PRO1383 - HGNC:25429|Ensembl:ENSG00000166448|HPRD:13226|Vega:OTTHUMG00000154419 7 7q22.1 transmembrane protein 130 protein-coding TMEM130 transmembrane protein 130 O - 20121230 -9606 222894 FERD3L - N-TWIST|NATO3|NTWIST|bHLHa31 HGNC:16660|Ensembl:ENSG00000146618|HPRD:16890|Vega:OTTHUMG00000090823 7 7p21.1 Fer3-like (Drosophila) protein-coding FERD3L Fer3-like (Drosophila) O basic helix-loop-helix protein N-twist|class A basic helix-loop-helix protein 31|fer3-like protein|nephew of atonal 3|neuronal twist 20121230 -9606 222901 RPL23P8 - RPL23_4_790 HGNC:36225 7 7p21.1 ribosomal protein L23 pseudogene 8 pseudo RPL23P8 ribosomal protein L23 pseudogene 8 O - 20121230 -9606 222950 NYAP1 - C7orf51 HGNC:22009|Ensembl:ENSG00000166924|HPRD:13427|Vega:OTTHUMG00000155290 7 7q22.1 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 protein-coding NYAP1 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 O neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1 20121230 -9606 222962 SLC29A4 PSEC0113 ENT4|PMAT HGNC:23097|MIM:609149|Ensembl:ENSG00000164638|HPRD:15362|Vega:OTTHUMG00000023797 7 7p22.1 solute carrier family 29 (nucleoside transporters), member 4 protein-coding SLC29A4 solute carrier family 29 (nucleoside transporters), member 4 O equilibrative nucleoside transporter 4|hENT4|plasma membrane monoamine transporter|solute carrier family 29 member 4 20121230 -9606 222967 RSPH10B - - HGNC:27362|Ensembl:ENSG00000155026|HPRD:11249|Vega:OTTHUMG00000152378 7 7p22.1 radial spoke head 10 homolog B (Chlamydomonas) protein-coding RSPH10B radial spoke head 10 homolog B (Chlamydomonas) O radial spoke head 10 homolog B|radial spoke head 10 homolog B2 20121230 -9606 223075 CCDC129 - - HGNC:27363|Ensembl:ENSG00000180347|HPRD:14137|Vega:OTTHUMG00000128611 7 7p14.3 coiled-coil domain containing 129 protein-coding CCDC129 coiled-coil domain containing 129 O coiled-coil domain-containing protein 129 20121230 -9606 223082 ZNRF2 - RNF202 HGNC:22316|MIM:612061|Ensembl:ENSG00000180233|HPRD:15894|Vega:OTTHUMG00000097759 7 7p14.3 zinc and ring finger 2 protein-coding ZNRF2 zinc and ring finger 2 O E3 ubiquitin-protein ligase ZNRF2|RING finger protein 202|protein Ells2|zinc finger/RING finger 2|zinc/RING finger protein 2 20121230 -9606 223117 SEMA3D UNQ760/PRO1491 Sema-Z2|coll-2 HGNC:10726|MIM:609907|Ensembl:ENSG00000153993|HPRD:15321|Vega:OTTHUMG00000154569 7 7q21.11 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D O collapsin 2|semaphorin-3D 20121230 -9606 225689 MAPK15 - ERK7|ERK8 HGNC:24667|Ensembl:ENSG00000181085|HPRD:16867|Vega:OTTHUMG00000146450 8 - mitogen-activated protein kinase 15 protein-coding MAPK15 mitogen-activated protein kinase 15 O ERK-7|ERK-8|MAP kinase 15|MAPK 15|extracellular regulated kinase 8 delta|extracellular signal regulated kinase 8|extracellular signal-regulated kinase 7|extracellular signal-regulated kinase 8 20121230 -9606 245711 SPDYA - RINGO3|RINGOA|SPDY1|SPY1 HGNC:30613|MIM:614029|Ensembl:ENSG00000163806|HPRD:18095|Vega:OTTHUMG00000074041 2 2p23.2 speedy homolog A (Xenopus laevis) protein-coding SPDYA speedy homolog A (Xenopus laevis) O RINGO A|hSpy/Ringo A|rapid inducer of G2/M progression in oocytes A|speedy protein A|speedy-1 20121230 -9606 245802 MS4A6E - - HGNC:14285|MIM:608402|Ensembl:ENSG00000166926|HPRD:12227|Vega:OTTHUMG00000167355 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 6E protein-coding MS4A6E membrane-spanning 4-domains, subfamily A, member 6E O membrane-spanning 4-domains subfamily A member 6E 20121230 -9606 245806 VGLL2 RP1-179P9.2 VGL2|VITO1 HGNC:20232|MIM:609979|Ensembl:ENSG00000170162|HPRD:18282|Vega:OTTHUMG00000015451 6 6q22.1 vestigial like 2 (Drosophila) protein-coding VGLL2 vestigial like 2 (Drosophila) O Vestigial and Tondu related protein 1|transcription cofactor vestigial-like protein 2 20121230 -9606 245812 CNPY4 PSEC0237 PRAT4B HGNC:28631|MIM:610047|Ensembl:ENSG00000166997|HPRD:14611|Vega:OTTHUMG00000154817 7 7q22.1 canopy 4 homolog (zebrafish) protein-coding CNPY4 canopy 4 homolog (zebrafish) O PRotein Associated with Tlr4|protein canopy homolog 4 20121230 -9606 245821 DFNB34 - - HGNC:17143 3 3p22.1 deafness, autosomal recessive 34 unknown DFNB34 deafness, autosomal recessive 34 O - 20110215 -9606 245908 DEFB105A - BD-5|DEFB-5|DEFB105 HGNC:18087|Ensembl:ENSG00000186562|HPRD:10871|Vega:OTTHUMG00000150011 8 8p23.1 defensin, beta 105A protein-coding DEFB105A defensin, beta 105A O beta defensin 5|beta-defensin 105|beta-defensin 5|defensin, beta 5 20121230 -9606 245909 DEFB106A - BD-6|DEFB-6|DEFB106 HGNC:18088|Ensembl:ENSG00000186579|HPRD:10872|Vega:OTTHUMG00000150012 8 8p23.1 defensin, beta 106A protein-coding DEFB106A defensin, beta 106A O beta-defensin 106|beta-defensin 6|defensin, beta 6 20121230 -9606 245910 DEFB107A - BD-7|DEFB-7|DEFB107 HGNC:18086|Ensembl:ENSG00000186572|Vega:OTTHUMG00000150013 8 8p23.1 defensin, beta 107A protein-coding DEFB107A defensin, beta 107A O beta-defensin 107|beta-defensin 7|defensin, beta 7 20121230 -9606 245911 DEFB108B - - HGNC:29966|Ensembl:ENSG00000184276|HPRD:16790|Vega:OTTHUMG00000167533 11 11q13.4 defensin, beta 108B protein-coding DEFB108B defensin, beta 108B O BD-8|DEFB-8|beta-defensin 108B|beta-defensin 8|defensin, beta 108, pseudogene 1|defensin, beta 8|hBD-8 20121230 -9606 245912 DEFB109P1 - DEFB-9|DEFB109|DEFB109A HGNC:18090 8 8p23.1 defensin, beta 109, pseudogene 1 pseudo DEFB109P1 defensin, beta 109, pseudogene 1 O - 20121209 -9606 245913 DEFB110 - DEFB-10|DEFB-11|DEFB111 HGNC:18091|Ensembl:ENSG00000203970|Vega:OTTHUMG00000160208 6 6p12.3 defensin, beta 110 locus protein-coding DEFB110 defensin, beta 110 locus O beta-defensin 10|beta-defensin 11|beta-defensin 110|beta-defensin 111|defensin, beta 10 20121230 -9606 245915 DEFB112 - DEFB-12 HGNC:18093|Ensembl:ENSG00000180872|HPRD:18757|Vega:OTTHUMG00000160215 6 6p12.3 defensin, beta 112 protein-coding DEFB112 defensin, beta 112 O beta-defensin 112|beta-defensin 12|defensin, beta 12 20121230 -9606 245927 DEFB113 - DEFB-13 HGNC:18094|Ensembl:ENSG00000214642|Vega:OTTHUMG00000160210 6 6p12.3 defensin, beta 113 protein-coding DEFB113 defensin, beta 113 O beta-defensin 113|beta-defensin 13|defensin, beta 13 20121230 -9606 245928 DEFB114 - DEFB-14 HGNC:18095|Ensembl:ENSG00000177684|HPRD:18758|Vega:OTTHUMG00000160209 6 6p12.3 defensin, beta 114 protein-coding DEFB114 defensin, beta 114 O beta-defensin 114|beta-defensin 14|defensin, beta 14 20121230 -9606 245929 DEFB115 - DEFB-15 HGNC:18096|Ensembl:ENSG00000215547|Vega:OTTHUMG00000159284 20 20q11.1 defensin, beta 115 protein-coding DEFB115 defensin, beta 115 O beta-defensin 115|beta-defensin 15|defensin, beta 15 20121230 -9606 245930 DEFB116 - DEFB-16 HGNC:18097|Ensembl:ENSG00000215545|Vega:OTTHUMG00000159285 20 20q11.21 defensin, beta 116 protein-coding DEFB116 defensin, beta 116 O beta-defensin 116|beta-defensin 16|defensin, beta 16 20121230 -9606 245931 DEFB117 - DEFB-17 HGNC:18098 20 20q11.21 defensin, beta 117 pseudo DEFB117 defensin, beta 117 O - 20121116 -9606 245932 DEFB119 RP5-1018D12.9 DEFB-19|DEFB-20|DEFB120|ESC42-RELA|ESC42-RELB HGNC:18099|Ensembl:ENSG00000180483|HPRD:10873|Vega:OTTHUMG00000032172 20 20q11.21 defensin, beta 119 protein-coding DEFB119 defensin, beta 119 O beta-defensin 119|defensin, beta 120|defensin, beta 19|defensin, beta 20 20121230 -9606 245934 DEFB121 - ESC42RELC HGNC:18101|Ensembl:ENSG00000204548|HPRD:16791|Vega:OTTHUMG00000032171 20 20q11.1 defensin, beta 121 protein-coding DEFB121 defensin, beta 121 O beta-defensin 121|beta-defensin 21|defensin, beta 21 20121230 -9606 245935 DEFB122 - DEFB-22|DEFB122P HGNC:18102 20 20q11.21 defensin, beta 122 (pseudogene) pseudo DEFB122 defensin, beta 122 (pseudogene) O - 20121230 -9606 245936 DEFB123 UNQ1963/PRO4485 DEFB-23|ESC42-RELD HGNC:18103|Ensembl:ENSG00000180424|HPRD:10874|Vega:OTTHUMG00000032170 20 20q11.1 defensin, beta 123 protein-coding DEFB123 defensin, beta 123 O beta defensin 23|beta-defensin 123|beta-defensin 23|specific to testis and epididymis 20121230 -9606 245937 DEFB124 - DEFB-24 HGNC:18104|Ensembl:ENSG00000180383|HPRD:18759|Vega:OTTHUMG00000159287 20 20q11.1 defensin, beta 124 protein-coding DEFB124 defensin, beta 124 O beta-defensin 124|beta-defensin 24|defensin, beta 24 20121230 -9606 245938 DEFB125 RP11-530N10.2 DEFB-25 HGNC:18105 20 20p13 defensin, beta 125 protein-coding DEFB125 defensin, beta 125 O beta defensin 25|beta-defensin 125|beta-defensin 25 20121230 -9606 245939 DEFB128 - DEFB-28|DEFB28|hBD-28 HGNC:18106|Ensembl:ENSG00000185982|Vega:OTTHUMG00000043057 20 20p13 defensin, beta 128 protein-coding DEFB128 defensin, beta 128 O beta-defensin 128|beta-defensin 28|defensin, beta 28 20121230 -9606 245940 DEFB130 - DEFB-30 HGNC:18107|Ensembl:ENSG00000232948|Vega:OTTHUMG00000158742 8 8p23.1 defensin, beta 130 protein-coding DEFB130 defensin, beta 130 O beta-defensin 130|beta-defensin 30|defensin, beta 30 20121230 -9606 245972 ATP6V0D2 - ATP6D2|VMA6 HGNC:18266|Ensembl:ENSG00000147614|HPRD:16522|Vega:OTTHUMG00000163637 8 - ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 protein-coding ATP6V0D2 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 O V-ATPase subunit d 2|V-type proton ATPase subunit d 2|vacuolar proton pump subunit d 2 20121230 -9606 245973 ATP6V1C2 - ATP6C2|VMA5 HGNC:18264|Ensembl:ENSG00000143882|HPRD:16523|Vega:OTTHUMG00000090459 2 - ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 protein-coding ATP6V1C2 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 O V-ATPase C2 subunit|V-ATPase subunit C 2|V-type proton ATPase subunit C 2|vacuolar proton pump subunit C 2 20121230 -9606 246100 CTAG1A - ESO1|LAGE2A HGNC:24198|MIM:300657|Ensembl:ENSG00000183678|HPRD:06607|Vega:OTTHUMG00000024238 X Xq28 cancer/testis antigen 1A protein-coding CTAG1A cancer/testis antigen 1A O CT6.1|LAGE-2|autoimmunogenic cancer/testis antigen NY-ESO-1|cancer/testis antigen 1|cancer/testis antigen 1-A|cancer/testis antigen 6.1|l antigen family member 2 20121230 -9606 246112 TAF13P1 - TAF13P HGNC:18699 6 6q14.3-q15 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene 1 pseudo TAF13P1 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene 1 O - 20121230 -9606 246119 TTTY10 - NCRNA00133|TTY10 HGNC:18491 Y Yq11.221 testis-specific transcript, Y-linked 10 (non-protein coding) miscRNA TTTY10 testis-specific transcript, Y-linked 10 (non-protein coding) O - 20121230 -9606 246122 TTTY7 - CLONE795723|LINC00129|NCRNA00129|TTTY7A|TTTY7B|TTY7 HGNC:18488 Y Yp11.2 testis-specific transcript, Y-linked 7 (non-protein coding) miscRNA TTTY7 testis-specific transcript, Y-linked 7 (non-protein coding) O - 20121230 -9606 246123 ZNF736P3Y - ZNF381P|ZNF736P3|ZNF736PY3 HGNC:37728 Y Yq11.223 zinc finger protein 736 pseudogene 3, Y-linked pseudo ZNF736P3Y zinc finger protein 736 pseudogene 3, Y-linked O - 20121209 -9606 246126 TXLNG2P hCG_1987333 CYorf15A|CYorf15B HGNC:18473|MIM:400031|HPRD:10618 Y Yq11.222 taxilin gamma 2, pseudogene pseudo TXLNG2P taxilin gamma 2, pseudogene O - 20121230 -9606 246132 HCHOLA4 - - HGNC:18573 16 16q22.1 hypercholesterolemia, autosomal dominant 4 unknown HCHOLA4 hypercholesterolemia, autosomal dominant 4 O - 20110305 -9606 246135 TAF9BP1 - - HGNC:30687 3 3p24.2 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 1 pseudo TAF9BP1 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 1 O - 20121230 -9606 246175 CNOT6L - CCR4b HGNC:18042|Ensembl:ENSG00000138767|HPRD:10841|Vega:OTTHUMG00000160832 4 4q13.3 CCR4-NOT transcription complex, subunit 6-like protein-coding CNOT6L CCR4-NOT transcription complex, subunit 6-like O CCR4-NOT transcription complex subunit 6-like|carbon catabolite repressor protein 4 homolog B 20121230 -9606 246176 GAS2L2 - GAR17 HGNC:24846|MIM:611398|Ensembl:ENSG00000132139|HPRD:11000|Vega:OTTHUMG00000132953 17 17q12 growth arrest-specific 2 like 2 protein-coding GAS2L2 growth arrest-specific 2 like 2 O GAS2-like protein 2|GAS2-related protein on chromosome 17 20121230 -9606 246181 AKR7L - AFAR3|AFB1-AR3|AKR7A4 HGNC:24056|MIM:608478|HPRD:12240 1 1p36.13|1p35-p36.1 aldo-keto reductase family 7-like pseudo AKR7L aldo-keto reductase family 7-like O - 20121230 -9606 246182 AKR7A2P1 - AFARP1 HGNC:24062 1 1p12 aldo-keto reductase family 7, member A2 pseudogene 1 pseudo AKR7A2P1 aldo-keto reductase family 7, member A2 pseudogene 1 O - 20121230 -9606 246184 CDC26 - ANAPC12|APC12|C9orf17 HGNC:17839|MIM:614533|Ensembl:ENSG00000176386|HPRD:13012|Vega:OTTHUMG00000020521 9 9q32 cell division cycle 26 homolog (S. cerevisiae) protein-coding CDC26 cell division cycle 26 homolog (S. cerevisiae) O CDC26 subunit of anaphase promoting complex|anaphase-promoting complex subunit 12|anaphase-promoting complex subunit CDC26|cell division cycle protein 26 homolog 20121230 -9606 246210 IKBKGP1 - IKBKGP|deltaNEMO HGNC:24455 X Xq28 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma pseudogene 1 pseudo IKBKGP1 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma pseudogene 1 O - 20121230 -9606 246213 SLC17A8 - DFNA25|VGLUT3 HGNC:20151|MIM:607557|Ensembl:ENSG00000179520|HPRD:10457|Vega:OTTHUMG00000170358 12 12q23.1 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 protein-coding SLC17A8 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 O solute carrier family 17 member 8|vesicular glutamate transporter 3 20121230 -9606 246230 CMAL - - MIM:163000 5 5q13-q22 Capillary malformations, hereditary unknown - - - - 20120622 -9606 246243 RNASEH1 - H1RNA|RNH1 HGNC:18466|MIM:604123|Ensembl:ENSG00000171865|HPRD:04989|Vega:OTTHUMG00000090279 2 2p25 ribonuclease H1 protein-coding RNASEH1 ribonuclease H1 O RNase H1|ribonuclease H type II 20121230 -9606 246259 BMND3 - - MIM:606928 1 1p36 Bone mineral density variability 3 unknown - - - - 20120622 -9606 246260 BDA1B - - MIM:607004 5 5p13.3-p13.2 Brachydactyly, type A1, locus B unknown - - - - 20120622 -9606 246269 LACE1 RP3-479O19.1 AFG1 HGNC:16411|Ensembl:ENSG00000135537|HPRD:11223|Vega:OTTHUMG00000015324 6 6q22.1 lactation elevated 1 protein-coding LACE1 lactation elevated 1 O ATPase family gene 1 homolog|CG8520 gene product|lactation elevated protein 1|protein AFG1 homolog 20121230 -9606 246283 TRBV22OR9-2 - TCRBV22S2|TCRBV29S2O HGNC:18740|IMGT/GENE-DB:TRBV22/OR9-2 9 9p21 T cell receptor beta variable 22/OR9-2 (pseudogene) pseudo TRBV22OR9-2 T cell receptor beta variable 22/OR9-2 (pseudogene) O - 20121230 -9606 246285 TRBV26OR9-2 - TCRBV26S2|TCRBV28S2|TCRBV28S2O HGNC:15485|IMGT/GENE-DB:TRBV26/OR9-2 9 9p21 T cell receptor beta variable 26/OR9-2 (pseudogene) pseudo TRBV26OR9-2 T cell receptor beta variable 26/OR9-2 (pseudogene) O - 20121230 -9606 246286 TRBVAOR9-2 - TCRBV33S2|TRBVA/OR9-2 HGNC:18741|IMGT/GENE-DB:TRBVA/OR9-2 9 9p21 T cell receptor beta variable A/OR9-2 (pseudogene) pseudo TRBVAOR9-2 T cell receptor beta variable A/OR9-2 (pseudogene) O - 20121230 -9606 246287 DFNA45 - - HGNC:18691 - - deafness, autosomal dominant 45 unknown DFNA45 deafness, autosomal dominant 45 O - 20110215 -9606 246288 DFNA46 - - HGNC:18692 - - deafness, autosomal dominant 46 unknown DFNA46 deafness, autosomal dominant 46 O - 20110215 -9606 246289 DFNA47 - DFNB83 HGNC:18693|MIM:608652 9 9p22-p21 deafness, autosomal dominant 47 unknown DFNA47 deafness, autosomal dominant 47 O - 20120622 -9606 246312 C21orf91-OT1 - D21S2089E|NCRNA00285 HGNC:16729 21 21q21.1 C21orf91 overlapping transcript 1 (non-protein coding) miscRNA C21orf91-OT1 C21orf91 overlapping transcript 1 (non-protein coding) O - 20121230 -9606 246318 FLJ13773 - - - 17 - uncharacterized LOC246318 protein-coding - - - - 20121018 -9606 246319 VTLG - - MIM:193200 6 6p21.3 Vitiligo unknown - - - - 20120622 -9606 246321 HSCRS2 - - MIM:606874 3 3p21 Hirschsprung disease, short-segment, 2 unknown - - - - 20120622 -9606 246322 HSCRS3 - - MIM:606875 19 19q12 Hirschsprung disease, short-segment, 3 unknown - - - - 20120622 -9606 246329 STAC3 - - HGNC:28423|Ensembl:ENSG00000185482|HPRD:11606|Vega:OTTHUMG00000171271 12 12q13.3 SH3 and cysteine rich domain 3 protein-coding STAC3 SH3 and cysteine rich domain 3 O SH3 and cysteine-rich domain-containing protein 3 20121230 -9606 246330 PELI3 - - HGNC:30010|MIM:609827|Ensembl:ENSG00000174516|HPRD:17535|Vega:OTTHUMG00000167109 11 11q13.2 pellino E3 ubiquitin protein ligase family member 3 protein-coding PELI3 pellino E3 ubiquitin protein ligase family member 3 O E3 ubiquitin-protein ligase pellino homolog 3|pellino homolog 3|protein pellino homolog 3 20121230 -9606 246704 LINC00315 - C21orf93|NCRNA00315 HGNC:16621|HPRD:10777 21 21q22.3 long intergenic non-protein coding RNA 315 miscRNA LINC00315 long intergenic non-protein coding RNA 315 O - 20121230 -9606 246705 LINC00314 - C21orf94|NCRNA00314 HGNC:16622|HPRD:10778 21 21q21.3 long intergenic non-protein coding RNA 314 miscRNA LINC00314 long intergenic non-protein coding RNA 314 O - 20121230 -9606 246714 CKS1BP2 - bA192N10.2 HGNC:24232 10 10q11.1 CDC28 protein kinase regulatory subunit 1B pseudogene 2 pseudo CKS1BP2 CDC28 protein kinase regulatory subunit 1B pseudogene 2 O - 20121230 -9606 246715 CKS1BP3 - - HGNC:24233 5 5q12.2 CDC28 protein kinase regulatory subunit 1B pseudogene 3 pseudo CKS1BP3 CDC28 protein kinase regulatory subunit 1B pseudogene 3 O - 20121230 -9606 246716 YWHAQP2 - - HGNC:23211 22 22q13.2 YWHAQ pseudogene 2 pseudo YWHAQP2 YWHAQ pseudogene 2 O - 20121230 -9606 246717 TCEB2P1 - - HGNC:39719 13 13q12 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 1 pseudo TCEB2P1 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 1 O - 20121230 -9606 246719 UBE2SP1 - - HGNC:30864 17 17p11.2 ubiquitin-conjugating enzyme E2S pseudogene 1 pseudo UBE2SP1 ubiquitin-conjugating enzyme E2S pseudogene 1 O - 20121230 -9606 246720 DYNLL1P1 - DNCL1P1 HGNC:20723 14 14q31.1 dynein, light chain, LC8-type 1 pseudogene 1 pseudo DYNLL1P1 dynein, light chain, LC8-type 1 pseudogene 1 O - 20121230 -9606 246721 POLR2J2 - HRPB11B|RPB11b1 HGNC:23208|MIM:609881|Ensembl:ENSG00000228049|Ensembl:ENSG00000267645|HPRD:17878|Vega:OTTHUMG00000180801 7 7q22.1 polymerase (RNA) II (DNA directed) polypeptide J2 protein-coding POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2 O DNA directed RNA polymerase II polypeptide J-related|DNA-directed RNA polymerase II subunit J2|DNA-directed RNA polymerase II subunit RPB11-b1|RNA polymerase II subunit B11-b1 20121230 -9606 246723 LOC246723 - - - 12 12q14 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d pseudogene pseudo - - - - 20121230 -9606 246724 LOC246724 - - - 7 7p15 DNA directed RNA polymerase II polypeptide J-related gene protein-coding - - - - 20100404 -9606 246725 LOC246725 - - - 7 7q11.2 DNA directed RNA polymerase II polypeptide J-related gene protein-coding - - - - 20100404 -9606 246731 PPIHP1 - - HGNC:31355 11 11q23 peptidylprolyl isomerase H (cyclophilin H) pseudogene 1 pseudo PPIHP1 peptidylprolyl isomerase H (cyclophilin H) pseudogene 1 O - 20121230 -9606 246734 NPCDR1 - NPCDRG|NPCR HGNC:13392 3 3p21.1 nasopharyngeal carcinoma, down-regulated 1 unknown NPCDR1 nasopharyngeal carcinoma, down-regulated 1 O - 20121230 -9606 246737 YWHAZP4 - - HGNC:30851 6 6q23.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 4 pseudo YWHAZP4 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 4 O - 20121230 -9606 246744 STH - MAPTIT HGNC:18839|MIM:607067|Ensembl:ENSG00000256762|HPRD:06142|Vega:OTTHUMG00000168633 17 17q21.1 saitohin protein-coding STH saitohin O microtubule-associated protein tau (MAPT) intronic transcript 20121230 -9606 246750 MYAS1 - - MIM:607085 6 6p21.3 Myasthenia gravis with thymus hyperplasia unknown - - - - 20120622 -9606 246751 SMAR - - MIM:607088 11 11q13 Spinal muscular atrophy, chronic distal, autosomal recessive unknown - - - - 20120622 -9606 246754 MTVR2 - - - 17 17q23 mouse mammary tumor virus receptor homolog 2 pseudo - - - - 20121230 -9606 246777 SPESP1 UNQ732/PRO1418 ESP|SP-ESP HGNC:15570|MIM:609399|Ensembl:ENSG00000258484|HPRD:15436|Vega:OTTHUMG00000133321 15 15q23 sperm equatorial segment protein 1 protein-coding SPESP1 sperm equatorial segment protein 1 O equatorial segment protein|glycosylated 38 kDa sperm protein C-7/8 20121230 -9606 246778 IL27 - IL-27|IL-27A|IL27A|IL27p28|IL30|p28 HGNC:19157|MIM:608273|Ensembl:ENSG00000197272|HPRD:16307|Vega:OTTHUMG00000097023 16 16p11 interleukin 27 protein-coding IL27 interleukin 27 O IL-27 p28 subunit|IL-27 subunit alpha|IL-27-A|IL27-A|interleukin 30|interleukin-27 subunit alpha 20121230 -9606 246784 LOC246784 - - - 1 1q21.3 homolog of C. elegans smu-1 pseudogene pseudo - - - - 20121230 -9606 246785 LOC246785 - - - 22 22q13.2 Obg-like ATPase 1 pseudogene pseudo - - - - 20121230 -9606 252839 TMEM9 RP5-894H24.1 TMEM9A HGNC:18823|Ensembl:ENSG00000116857|HPRD:15542|Vega:OTTHUMG00000035831 1 - transmembrane protein 9 protein-coding TMEM9 transmembrane protein 9 O dermal papilla-derived protein 4 20121230 -9606 252840 SRP68P2 - SRPSMCR HGNC:30426 17 17p11.1 signal recognition particle 68kDa pseudogene 2 pseudo SRP68P2 signal recognition particle 68kDa pseudogene 2 O - 20121230 -9606 252841 SRP68P1 - SRPSMCR HGNC:30427 17 17p11.2 signal recognition particle 68kDa pseudogene 1 pseudo SRP68P1 signal recognition particle 68kDa pseudogene 1 O - 20121230 -9606 252842 AAT1 - FAA1 MIM:607086 11 11q23.3-q24 Aortic aneurysm, familial thoracic 1 unknown - - - - 20120622 -9606 252843 AAT2 - FAA2 MIM:607087 5 5q13-q14 Aortic aneurysm, familial thoracic 2 unknown - - - - 20120622 -9606 252862 LOC252862 - - - 7 7q31.1 CDC26 subunit of anaphase promoting complex-related gene protein-coding - - - - 20100404 -9606 252884 ZNF396 - ZSCAN14 HGNC:18824|MIM:609600|Ensembl:ENSG00000186496|HPRD:18334|Vega:OTTHUMG00000132562 18 18q12 zinc finger protein 396 protein-coding ZNF396 zinc finger protein 396 O zinc finger and SCAN domain-containing protein 14 20121230 -9606 252946 FAM197Y2 - CYorf16|FAM197Y2P HGNC:18848 Y Yp11.2 family with sequence similarity 197, Y-linked, member 2, pseudogene pseudo FAM197Y2 family with sequence similarity 197, Y-linked, member 2 O - 20121209 -9606 252948 TTTY16 - NCRNA00139 HGNC:18840 Y Yp11.2 testis-specific transcript, Y-linked 16 (non-protein coding) miscRNA TTTY16 testis-specific transcript, Y-linked 16 (non-protein coding) O - 20121209 -9606 252949 TTTY17A - NCRNA00140|TTTY17 HGNC:18841|MIM:400040 Y Yq11.2 testis-specific transcript, Y-linked 17A (non-protein coding) miscRNA TTTY17A testis-specific transcript, Y-linked 17A (non-protein coding) O - 20121209 -9606 252950 TTTY18 - NCRNA00143 HGNC:18842 Y Yp11.2 testis-specific transcript, Y-linked 18 (non-protein coding) miscRNA TTTY18 testis-specific transcript, Y-linked 18 (non-protein coding) O - 20121230 -9606 252951 TTTY20 - NCRNA00145 HGNC:18844 Y Yp11.2 testis-specific transcript, Y-linked 20 (non-protein coding) miscRNA TTTY20 testis-specific transcript, Y-linked 20 (non-protein coding) O - 20121209 -9606 252952 TTTY19 - NCRNA00144 HGNC:18843 Y Yp11.2 testis-specific transcript, Y-linked 19 (non-protein coding) miscRNA TTTY19 testis-specific transcript, Y-linked 19 (non-protein coding) O - 20121230 -9606 252953 TTTY21 - NCRNA00146 HGNC:18845 Y Yp11.2 testis-specific transcript, Y-linked 21 (non-protein coding) miscRNA TTTY21 testis-specific transcript, Y-linked 21 (non-protein coding) O - 20121209 -9606 252954 TTTY22 - NCRNA00147 HGNC:18846 Y Yp11.2 testis-specific transcript, Y-linked 22 (non-protein coding) miscRNA TTTY22 testis-specific transcript, Y-linked 22 (non-protein coding) O - 20121209 -9606 252955 TTTY23 - NCRNA00148 HGNC:18847 Y Yp11.2 testis-specific transcript, Y-linked 23 (non-protein coding) miscRNA TTTY23 testis-specific transcript, Y-linked 23 (non-protein coding) O - 20121230 -9606 252956 TPM3P1 - TPM3L2 HGNC:16350 7 7q31.3 tropomyosin 3 pseudogene 1 pseudo TPM3P1 tropomyosin 3 pseudogene 1 O - 20121230 -9606 252968 LOC252968 - - - 17 17p11.2 karyopherin (importin) beta 2 pseudogene pseudo - - - - 20121230 -9606 252969 NEIL2 - NEH2|NEI2 HGNC:18956|MIM:608933|Ensembl:ENSG00000154328|HPRD:16406|Vega:OTTHUMG00000090753 8 8p23.1 nei endonuclease VIII-like 2 (E. coli) protein-coding NEIL2 nei endonuclease VIII-like 2 (E. coli) O DNA glycosylase/AP lyase Neil2|DNA-(apurinic or apyrimidinic site) lyase Neil2|endonuclease 8-like 2|endonuclease VIII-like 2|nei homolog 2|nei like 2|nei-like protein 2 20121230 -9606 252983 STXBP4 - Synip HGNC:19694|MIM:610415|Ensembl:ENSG00000166263|HPRD:18127|Vega:OTTHUMG00000074043 17 17q22 syntaxin binding protein 4 protein-coding STXBP4 syntaxin binding protein 4 O STX4-interacting protein|syntaxin 4 interacting protein|syntaxin 4-interacting protein|syntaxin-binding protein 4 20121230 -9606 252995 FNDC5 - FRCP2 HGNC:20240|MIM:611906|Ensembl:ENSG00000160097|HPRD:17009|Vega:OTTHUMG00000004015 1 1p35.1 fibronectin type III domain containing 5 protein-coding FNDC5 fibronectin type III domain containing 5 O fibronectin type III domain-containing protein 5|fibronectin type III repeat-containing protein 2|irisin 20121230 -9606 253012 HEPACAM2 UNQ305/PRO346 MIKI HGNC:27364|MIM:614133|Ensembl:ENSG00000188175|HPRD:14138|Vega:OTTHUMG00000131732 7 7q21.3 HEPACAM family member 2 protein-coding HEPACAM2 HEPACAM family member 2 O mitotic kinetics regulator 20121230 -9606 253013 RPL31P8 - RPL31_8_567 HGNC:31324 5 5q12.1 ribosomal protein L31 pseudogene 8 pseudo RPL31P8 ribosomal protein L31 pseudogene 8 O - 20121230 -9606 253017 TECRL - GPSN2L|SRD5A2L2|TERL HGNC:27365|Ensembl:ENSG00000205678|HPRD:18104|Vega:OTTHUMG00000160680 4 4q13.1 trans-2,3-enoyl-CoA reductase-like protein-coding TECRL trans-2,3-enoyl-CoA reductase-like O glycoprotein, synaptic 2-like|steroid 5 alpha-reductase 2-like 2|steroid 5-alpha-reductase 2-like 2 protein 20121230 -9606 253018 HCG27 - bCX101P6.9|bPG299F13.9|bQB115I13.2 HGNC:27366|HPRD:13637 6 6p21.33 HLA complex group 27 (non-protein coding) miscRNA HCG27 HLA complex group 27 (non-protein coding) O - 20121230 -9606 253039 LOC253039 - - - 9 9q33.2 uncharacterized LOC253039 miscRNA - - - - 20121230 -9606 253044 LOC253044 - - - 15 15q24.1 uncharacterized LOC253044 miscRNA - - - - 20121230 -9606 253128 LINC00612 - C12orf33 HGNC:28621 12 12p13.31 long intergenic non-protein coding RNA 612 miscRNA LINC00612 long intergenic non-protein coding RNA 612 O - 20121230 -9606 253143 PRR14L RP4-694E4.2 C22orf30 HGNC:28738|Ensembl:ENSG00000183530|HPRD:14665|Vega:OTTHUMG00000030139 22 22q12.2 proline rich 14-like protein-coding PRR14L proline rich 14-like O proline rich 14-like protein|protein PRR14L 20121230 -9606 253152 EPHX4 - ABHD7|EPHXRP HGNC:23758|Ensembl:ENSG00000172031|HPRD:12408|Vega:OTTHUMG00000010114 1 1p22.1 epoxide hydrolase 4 protein-coding EPHX4 epoxide hydrolase 4 O abhydrolase domain containing 7|abhydrolase domain-containing protein 7|epoxide hydrolase-related protein 20121230 -9606 253175 CDY1B - CDY HGNC:23920|Ensembl:ENSG00000172352|HPRD:16702|Vega:OTTHUMG00000045037 Y Yq11.223 chromodomain protein, Y-linked, 1B protein-coding CDY1B chromodomain protein, Y-linked, 1B O chromodomain protein, Y chromosome, 1, centromeric|testis-specific chromodomain protein Y 1|testis-specific chromodomain protein on Y, centromeric 20121230 -9606 253190 SERHL2 RP1-222E13.11-003 dJ222E13.1 HGNC:29446|Ensembl:ENSG00000183569|HPRD:15908|Vega:OTTHUMG00000150892 22 22q13 serine hydrolase-like 2 protein-coding SERHL2 serine hydrolase-like 2 O serine hydrolase-like protein 2 20121230 -9606 253260 RICTOR - PIA|mAVO3 HGNC:28611|MIM:609022|Ensembl:ENSG00000164327|HPRD:10682|Vega:OTTHUMG00000162037 5 5p13.1 RPTOR independent companion of MTOR, complex 2 protein-coding RICTOR RPTOR independent companion of MTOR, complex 2 O AVO3 homolog|TORC2-specific protein AVO3|hAVO3|pianissimo|rapamycin-insensitive companion of mTOR 20121230 -9606 253264 ZNF503-AS1 - - HGNC:27370 10 10q22.2 ZNF503 antisense RNA 1 miscRNA ZNF503-AS1 ZNF503 antisense RNA 1 O - 20121230 -9606 253272 PCGF7P - RNF134P1 HGNC:30341 19 19p12 polycomb group ring finger 7 pseudogene pseudo PCGF7P polycomb group ring finger 7 pseudogene O - 20121230 -9606 253314 EIF4E1B - - HGNC:33179|Ensembl:ENSG00000175766|Vega:OTTHUMG00000163227 5 5q35.2 eukaryotic translation initiation factor 4E family member 1B protein-coding EIF4E1B eukaryotic translation initiation factor 4E family member 1B O eukaryotic translation initiation factor 4E type 1B 20121230 -9606 253430 IPMK - - HGNC:20739|MIM:609851|Ensembl:ENSG00000151151|HPRD:17153|Vega:OTTHUMG00000018268 10 10q21.1 inositol polyphosphate multikinase protein-coding IPMK inositol polyphosphate multikinase O inositol 1,3,4,6-tetrakisphosphate 5-kinase 20121230 -9606 253461 ZBTB38 - CIBZ|ZNF921 HGNC:26636|MIM:612218|Ensembl:ENSG00000177311|Vega:OTTHUMG00000160128 3 3q23 zinc finger and BTB domain containing 38 protein-coding ZBTB38 zinc finger and BTB domain containing 38 O zinc finger and BTB domain-containing protein 38 20121230 -9606 253512 SLC25A30 - KMCP1 HGNC:27371|MIM:610793|Ensembl:ENSG00000174032|HPRD:18056|Vega:OTTHUMG00000016853 13 13q14.13 solute carrier family 25, member 30 protein-coding SLC25A30 solute carrier family 25, member 30 O kidney mitochondrial carrier protein 1|kidney mitochondrial carrier protein-1 20121230 -9606 253558 LCLAT1 UNQ1849/PRO3579 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 HGNC:26756|MIM:614241|Ensembl:ENSG00000172954|HPRD:17458|Vega:OTTHUMG00000099349 2 2p23.1 lysocardiolipin acyltransferase 1 protein-coding LCLAT1 lysocardiolipin acyltransferase 1 O 1-AGP acyltransferase 8|1-AGPAT 8|1-acylglycerol-3-phosphate O-acyltransferase 8|acyl-CoA:lysocardiolipin acyltransferase 1 20121230 -9606 253559 CADM2 - IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 HGNC:29849|MIM:609938|Ensembl:ENSG00000175161|HPRD:11046|Vega:OTTHUMG00000158990 3 3p12.1 cell adhesion molecule 2 protein-coding CADM2 cell adhesion molecule 2 O immunoglobulin superfamily member 4D|immunoglobulin superfamily, member 4D|nectin-like 3|nectin-like protein 3|synaptic cell adhesion molecule 2 20121230 -9606 253573 LOC253573 - - - 3 3q27.3 uncharacterized LOC253573 miscRNA - - - - 20121230 -9606 253582 TMEM244 - C6orf191|bA174C7.4 HGNC:21571|Ensembl:ENSG00000203756|HPRD:16663|Vega:OTTHUMG00000015553 6 6q22.33 transmembrane protein 244 protein-coding TMEM244 transmembrane protein 244 O putative transmembrane protein C6orf191 20121230 -9606 253635 CCDC75 - CENP-Y|CENPY|GPATCH11 HGNC:26768|Ensembl:ENSG00000152133|HPRD:08785|Vega:OTTHUMG00000128469 2 2p22.2 coiled-coil domain containing 75 protein-coding CCDC75 coiled-coil domain containing 75 O G patch domain containing 11|centromere protein Y|coiled-coil domain-containing protein 75|g patch domain-containing protein 11 20121230 -9606 253639 ZNF620 - - HGNC:28742|Ensembl:ENSG00000177842|HPRD:15878|Vega:OTTHUMG00000156044 3 3p22.1 zinc finger protein 620 protein-coding ZNF620 zinc finger protein 620 O - 20121230 -9606 253650 ANKRD18A - - HGNC:23643|Ensembl:ENSG00000180071|HPRD:13419|Vega:OTTHUMG00000019950 9 9p13.1 ankyrin repeat domain 18A protein-coding ANKRD18A ankyrin repeat domain 18A O ankyrin repeat domain-containing protein 18A 20121230 -9606 253665 TCEB2P2 - - HGNC:39720 11 11q24.3 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 2 pseudo TCEB2P2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 2 O - 20121230 -9606 253714 MMS22L - C6orf167|dJ39B17.2 HGNC:21475|Ensembl:ENSG00000146263|HPRD:12865|Vega:OTTHUMG00000015248 6 6q16.1 MMS22-like, DNA repair protein protein-coding MMS22L MMS22-like, DNA repair protein O protein MMS22-like 20121230 -9606 253724 GNN - - - 12 12q23.3 Grp94 neighboring nucleotidase pseudogene pseudo - - - - 20121230 -9606 253725 FAM21C RP11-175I17.5 FAM21A|VPEF HGNC:23414|MIM:613631|Ensembl:ENSG00000172661|HPRD:11094|Vega:OTTHUMG00000018089 10 10q11.1 family with sequence similarity 21, member C protein-coding FAM21C family with sequence similarity 21, member C O WASH complex subunit FAM21C|vaccinia virus penetration factor 20121230 -9606 253738 EBF3 RP11-234G16.3 COE3|EBF-3|O/E-2|OE-2 HGNC:19087|MIM:607407|Ensembl:ENSG00000108001|HPRD:16818|Vega:OTTHUMG00000019265 10 10q26.3 early B-cell factor 3 protein-coding EBF3 early B-cell factor 3 O olf-1/EBF-like 2|transcription factor COE3 20121230 -9606 253769 WDR27 - - HGNC:21248|Ensembl:ENSG00000184465|HPRD:11352|Vega:OTTHUMG00000016061 6 6q27 WD repeat domain 27 protein-coding WDR27 WD repeat domain 27 O WD repeat-containing protein 27 20121230 -9606 253782 CERS6 - CERS5|LASS6 HGNC:23826|Ensembl:ENSG00000172292|HPRD:17258|Vega:OTTHUMG00000132183 2 2q24.3 ceramide synthase 6 protein-coding CERS6 ceramide synthase 6 O LAG1 homolog, ceramide synthase 6|longevity assurance homolog 6 20121230 -9606 253805 LOC253805 - - - 11 11q25 uncharacterized LOC253805 unknown - - - - 20120508 -9606 253827 MSRB3 UNQ1965/PRO4487 DFNB74 HGNC:27375|MIM:613719|Ensembl:ENSG00000174099|HPRD:14785|Vega:OTTHUMG00000168866 12 12q14.3 methionine sulfoxide reductase B3 protein-coding MSRB3 methionine sulfoxide reductase B3 O methionine-R-sulfoxide reductase B3|methionine-R-sulfoxide reductase B3, mitochondrial 20121230 -9606 253832 ZDHHC20 - - HGNC:20749|Ensembl:ENSG00000180776|HPRD:08078|Vega:OTTHUMG00000017410 13 13q12.11 zinc finger, DHHC-type containing 20 protein-coding ZDHHC20 zinc finger, DHHC-type containing 20 O 4933421L13Rik|DHHC-20|DHHC-containing protein 20|probable palmitoyltransferase ZDHHC20|zinc finger DHHC domain-containing protein 20|zinc finger, DHHC domain containing 20 20121230 -9606 253842 LOC253842 - - - 9 9q34.11 uncharacterized LOC253842 protein-coding - - - - 20120508 -9606 253868 C20orf166-AS1 - C20orf200|NCRNA00335 HGNC:26393|HPRD:08083 20 20q13.33 C20orf166 antisense RNA 1 miscRNA C20orf166-AS1 C20orf166 antisense RNA 1 O - 20121230 -9606 253933 OR7E39P - OR7E138P|hg611 HGNC:8412 7 7p22.1 olfactory receptor, family 7, subfamily E, member 39 pseudogene pseudo OR7E39P olfactory receptor, family 7, subfamily E, member 39 pseudogene O - 20121230 -9606 253935 ANGPTL5 UNQ5795/PRO19600 - HGNC:19705|MIM:607666|Ensembl:ENSG00000187151|HPRD:09638|Vega:OTTHUMG00000167318 11 11q22.1 angiopoietin-like 5 protein-coding ANGPTL5 angiopoietin-like 5 O angiopoietin-like protein 5|angiopoietin-related protein 5 20121230 -9606 253943 YTHDF3 - - HGNC:26465|HPRD:08106 8 8q12.3 YTH domain family, member 3 protein-coding YTHDF3 YTH domain family, member 3 O YTH domain family 3|YTH domain family protein 3 20121230 -9606 253959 RALGAPA1 - GARNL1|GRIPE|TULIP1 HGNC:17770|MIM:608884|Ensembl:ENSG00000174373|HPRD:12324|Vega:OTTHUMG00000170619 14 14q13.2 Ral GTPase activating protein, alpha subunit 1 (catalytic) protein-coding RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) O GAP-related interacting protein to E12|GAP-related-interacting partner to E12|GTPase activating RANGAP domain-like 1|GTPase activating Rap/RanGAP domain-like 1|GTPase-activating Rap/Ran-GAP domain-like 1|RalGAPalpha1|p240|ral GTPase-activating protein alpha subunit 1|ral GTPase-activating protein subunit alpha-1|tuberin-like protein 1 20121230 -9606 253962 CACNA1G-AS1 - - HGNC:27377 17 17q21.33 CACNA1G antisense RNA 1 miscRNA CACNA1G-AS1 CACNA1G antisense RNA 1 O - 20121230 -9606 253970 SFTA3 hCG_2013488 SFTPH HGNC:18387|Ensembl:ENSG00000229415|Vega:OTTHUMG00000170540 14 14q13.3 surfactant associated 3 protein-coding SFTA3 surfactant associated 3 O putative protein SFTA3|surfactant associated protein H|surfactant-associated protein 3|surfactant-associated protein H 20121230 -9606 253980 KCTD13 FKSG86 PDIP1|POLDIP1|hBACURD1 HGNC:22234|MIM:608947|Ensembl:ENSG00000174943|HPRD:12339|Vega:OTTHUMG00000132120 16 16p11.2 potassium channel tetramerisation domain containing 13 protein-coding KCTD13 potassium channel tetramerisation domain containing 13 O BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1|BTB/POZ domain-containing protein KCTD13|TNFAIP1-like protein|polymerase delta-interacting protein 1 20121230 -9606 253982 ASPHD1 - - HGNC:27380|Ensembl:ENSG00000174939|HPRD:14139|Vega:OTTHUMG00000132121 16 16p11.2 aspartate beta-hydroxylase domain containing 1 protein-coding ASPHD1 aspartate beta-hydroxylase domain containing 1 O aspartate beta-hydroxylase domain-containing protein 1 20121230 -9606 253986 RPL10AP2 - RPL10A_5_900 HGNC:31081 8 8q11.1 ribosomal protein L10a pseudogene 2 pseudo RPL10AP2 ribosomal protein L10a pseudogene 2 O - 20121230 -9606 254013 METTL20 - C12orf72 HGNC:28739|Ensembl:ENSG00000139160|HPRD:14666|Vega:OTTHUMG00000169085 12 12p11.21 methyltransferase like 20 protein-coding METTL20 methyltransferase like 20 O methyltransferase-like protein 20 20121230 -9606 254028 LOC254028 - - - 14 14q11.2 uncharacterized LOC254028 unknown - - - - 20120710 -9606 254042 METAP1D - MAP1D|Metap1l HGNC:32583|MIM:610267|Ensembl:ENSG00000172878|HPRD:17462|Vega:OTTHUMG00000132283 2 2q31.1 methionyl aminopeptidase type 1D (mitochondrial) protein-coding METAP1D methionyl aminopeptidase type 1D (mitochondrial) O CDS of metAP-3 within PCR fragment|methionine aminopeptidase 1D, mitochondrial|methionyl aminopeptidase type 1D, mitochondrial 20121230 -9606 254048 UBN2 tcag7.1228 - HGNC:21931|MIM:613841|Ensembl:ENSG00000157741|Vega:OTTHUMG00000157623 7 7q34 ubinuclein 2 protein-coding UBN2 ubinuclein 2 O ubinuclein-2 20121230 -9606 254050 LRRC43 - - HGNC:28562|Ensembl:ENSG00000158113|HPRD:14601|Vega:OTTHUMG00000168915 12 12q24.31 leucine rich repeat containing 43 protein-coding LRRC43 leucine rich repeat containing 43 O leucine-rich repeat-containing protein 43 20121230 -9606 254057 LOC254057 - - - 3 3q21.3 uncharacterized LOC254057 protein-coding - - - - 20120508 -9606 254065 BRWD3 RP11-325E14.4 BRODL|MRX93 HGNC:17342|MIM:300553|Ensembl:ENSG00000165288|HPRD:06564|Vega:OTTHUMG00000021908 X Xq21.1 bromodomain and WD repeat domain containing 3 protein-coding BRWD3 bromodomain and WD repeat domain containing 3 O bromo domain-containing protein disrupted in leukemia|bromodomain and WD repeat-containing protein 3|novel WD repeat domain protein 20121230 -9606 254099 LOC254099 - - - 1 1p36.33 uncharacterized LOC254099 miscRNA - - - - 20121230 -9606 254100 LOC254100 - - - 11 11q13.1 uncharacterized LOC254100 miscRNA - - - - 20121230 -9606 254102 EHBP1L1 - - HGNC:30682|Ensembl:ENSG00000173442|Vega:OTTHUMG00000166520 11 11q13.1 EH domain binding protein 1-like 1 protein-coding EHBP1L1 EH domain binding protein 1-like 1 O EH domain-binding protein 1-like protein 1|tangerin 20121230 -9606 254122 SNX32 - SNX6B HGNC:26423|Ensembl:ENSG00000172803|HPRD:08090|Vega:OTTHUMG00000128491 11 11q13.1 sorting nexin 32 protein-coding SNX32 sorting nexin 32 O sorting nexin 6B|sorting nexin-32|sorting nexin-6B 20121230 -9606 254128 LOC254128 - - - 2 2q14.2 uncharacterized LOC254128 miscRNA - - - - 20121230 -9606 254158 CXorf58 - - HGNC:26356|Ensembl:ENSG00000165182|HPRD:06544|Vega:OTTHUMG00000021258 X Xp22.11 chromosome X open reading frame 58 protein-coding CXorf58 chromosome X open reading frame 58 O putative uncharacterized protein CXorf58 20121230 -9606 254170 FBXO33 - BMND12|Fbx33|c14_5247 HGNC:19833|MIM:609103|Ensembl:ENSG00000165355|HPRD:16441|Vega:OTTHUMG00000140257 14 14q21.1 F-box protein 33 protein-coding FBXO33 F-box protein 33 O F-box only protein 33 20121230 -9606 254173 TTLL10 RP5-902P8.1 TTLL5 HGNC:26693|Ensembl:ENSG00000162571|HPRD:08771|Vega:OTTHUMG00000000851 1 1p36.33 tubulin tyrosine ligase-like family, member 10 protein-coding TTLL10 tubulin tyrosine ligase-like family, member 10 O inactive polyglycylase TTLL10|tubulin tyrosine ligase-like family, member 5|tubulin--tyrosine ligase-like protein 10 20121230 -9606 254187 TSGA10IP - FAM161C HGNC:26555|HPRD:08147 11 11q13.1 testis specific, 10 interacting protein protein-coding TSGA10IP testis specific, 10 interacting protein O testis-specific protein 10-interacting protein|tsga10-interacting protein 20121230 -9606 254225 RNF169 - - HGNC:26961|Ensembl:ENSG00000166439|Vega:OTTHUMG00000165516 11 11q13.4 ring finger protein 169 protein-coding RNF169 ring finger protein 169 O E3 ubiquitin-protein ligase RNF169 20121230 -9606 254228 FAM26E RP3-493F7.3 C6orf188|dJ493F7.3 HGNC:21568|Ensembl:ENSG00000178033|HPRD:12868|Vega:OTTHUMG00000015442 6 6q22.1 family with sequence similarity 26, member E protein-coding FAM26E family with sequence similarity 26, member E O protein FAM26E 20121230 -9606 254240 BPIFC RP1-149A16.10-011 BPIL2 HGNC:16503|MIM:614109|Ensembl:ENSG00000184459|HPRD:16560|Vega:OTTHUMG00000058273 22 22q12.3 BPI fold containing family C protein-coding BPIFC BPI fold containing family C O BPI fold-containing family C protein|BPI-like 2|bactericidal/permeability-increasing protein-like 2 20121230 -9606 254251 LCORL - MLR1 HGNC:30776|MIM:611799|Ensembl:ENSG00000178177|HPRD:10088|Vega:OTTHUMG00000128538 4 4p15.31 ligand dependent nuclear receptor corepressor-like protein-coding LCORL ligand dependent nuclear receptor corepressor-like O LCOR-like protein|MBLK1-related protein|ligand-dependent nuclear receptor corepressor-like protein|transcription factor MLR1 20121230 -9606 254263 CNIH2 - CNIH-2|Cnil HGNC:28744|MIM:611288|Ensembl:ENSG00000174871|HPRD:13078|Vega:OTTHUMG00000166919 11 11q13.2 cornichon homolog 2 (Drosophila) protein-coding CNIH2 cornichon homolog 2 (Drosophila) O protein cornichon homolog 2 20121230 -9606 254268 AKNAD1 RP11-475E11.3 C1orf62 HGNC:28398|Ensembl:ENSG00000162641|HPRD:11325|Vega:OTTHUMG00000011231 1 1p13.3 AKNA domain containing 1 protein-coding AKNAD1 AKNA domain containing 1 O protein AKNAD1 20121230 -9606 254272 TBC1D28 - - HGNC:26858|Ensembl:ENSG00000189375|Vega:OTTHUMG00000059054 17 17p11.2 TBC1 domain family, member 28 protein-coding TBC1D28 TBC1 domain family, member 28 O TBC1 domain family member 28 20121230 -9606 254295 PHYHD1 RP11-101E3.2 - HGNC:23396|Ensembl:ENSG00000175287|HPRD:17850|Vega:OTTHUMG00000020764 9 9q34.11 phytanoyl-CoA dioxygenase domain containing 1 protein-coding PHYHD1 phytanoyl-CoA dioxygenase domain containing 1 O phytanoyl-CoA dioxygenase domain-containing protein 1 20121230 -9606 254299 LINC00677 - C14orf74 HGNC:20121 14 14q32.33 long intergenic non-protein coding RNA 677 miscRNA LINC00677 long intergenic non-protein coding RNA 677 O - 20121110 -9606 254312 LINC00710 - - HGNC:27386 10 10p14 long intergenic non-protein coding RNA 710 miscRNA LINC00710 long intergenic non-protein coding RNA 710 O - 20121230 -9606 254359 ZDHHC24 UNQ2528/PRO6027 - HGNC:27387|Ensembl:ENSG00000174165|HPRD:17325|Vega:OTTHUMG00000167096 11 11q13.2 zinc finger, DHHC-type containing 24 protein-coding ZDHHC24 zinc finger, DHHC-type containing 24 O DHHC-24|probable palmitoyltransferase ZDHHC24|zinc finger DHHC domain-containing protein 24|zinc finger, DHHC domain containing 24 20121230 -9606 254394 MCM9 RP3-329L24.2 C6orf61|MCMDC1|dJ329L24.1|dJ329L24.3 HGNC:21484|MIM:610098|Ensembl:ENSG00000111877|HPRD:17472|Vega:OTTHUMG00000015468 6 6q22.31 minichromosome maintenance complex component 9 protein-coding MCM9 minichromosome maintenance complex component 9 O DNA helicase MCM9|DNA replication licensing factor MCM9|mini-chromosome maintenance deficient domain-containing protein 1|minichromosome maintenance deficient domain containing 1 20121230 -9606 254398 ARHGAP42P4 - - HGNC:43941 14 14q11.2 Rho GTPase activating protein 42 pseudogene 4 pseudo ARHGAP42P4 Rho GTPase activating protein 42 pseudogene 4 O - 20121230 -9606 254427 PROSER2 - C10orf47 HGNC:23728|Ensembl:ENSG00000148426|HPRD:10697|Vega:OTTHUMG00000017673 10 10p14 proline and serine-rich protein 2 protein-coding PROSER2 proline and serine-rich protein 2 O uncharacterized protein C10orf47 20121230 -9606 254428 SLC41A1 - MgtE HGNC:19429|MIM:610801|Ensembl:ENSG00000133065|HPRD:15388|Vega:OTTHUMG00000036000 1 1q32.1 solute carrier family 41, member 1 protein-coding SLC41A1 solute carrier family 41, member 1 O solute carrier family 41 member 1 20121230 -9606 254439 C11orf86 - - HGNC:34442|Ensembl:ENSG00000173237|Vega:OTTHUMG00000153671 11 11q13.2 chromosome 11 open reading frame 86 protein-coding C11orf86 chromosome 11 open reading frame 86 O uncharacterized protein C11orf86 20121230 -9606 254528 MEIOB AC012180.11-001 C16orf73|gs129 HGNC:28569|Ensembl:ENSG00000162039|HPRD:17530|Vega:OTTHUMG00000128683 16 16p13.3 meiosis specific with OB domains protein-coding MEIOB meiosis specific with OB domains O meiosis-specific with OB domain-containing protein 20121230 -9606 254531 LPCAT4 - AGPAT7|AYTL3|LPAAT-eta|LPEAT2 HGNC:30059|MIM:612039|Ensembl:ENSG00000176454|HPRD:08315|Vega:OTTHUMG00000172349 15 15q14 lysophosphatidylcholine acyltransferase 4 protein-coding LPCAT4 lysophosphatidylcholine acyltransferase 4 O 1-AGP acyltransferase 7|1-AGPAT 7|1-acylglycerol-3-phosphate O-acyltransferase 7 (lysophosphatidic acid acyltransferase, eta)|PLSC domain containing protein|acyl-CoA:lysophosphatidylethanolamine acyltransferase 2|acyltransferase like 3|acyltransferase-like 3|lysophosphatidylethanolamine acyltransferase 2|lysophospholipid acyltransferase LPCAT4 20121230 -9606 254552 NUDT8 - - HGNC:8055|Ensembl:ENSG00000167799|HPRD:17652|Vega:OTTHUMG00000167292 11 11q13.2 nudix (nucleoside diphosphate linked moiety X)-type motif 8 protein-coding NUDT8 nudix (nucleoside diphosphate linked moiety X)-type motif 8 O nucleoside diphosphate-linked moiety X motif 8, mitochondrial|nudix motif 8 20121230 -9606 254559 LOC254559 - - - 15 15q26.1 uncharacterized LOC254559 miscRNA - - - - 20121230 -9606 254664 MAPK6PS2 - - HGNC:16756 21 21q21.1 mitogen-activated protein kinase 6 pseudogene 2 pseudo MAPK6PS2 mitogen-activated protein kinase 6 pseudogene 2 O - 20121230 -9606 254700 USP12PX - USP12P2 HGNC:21410 X Xq21.31 ubiquitin specific peptidase 12 pseudogene, X-linked pseudo USP12PX ubiquitin specific peptidase 12 pseudogene, X-linked O - 20121230 -9606 254773 LYG2 - LYGH HGNC:29615|Ensembl:ENSG00000185674|HPRD:14331|Vega:OTTHUMG00000130643 2 2q11.2 lysozyme G-like 2 protein-coding LYG2 lysozyme G-like 2 O lysozyme g-like protein 2 20121230 -9606 254778 C8orf46 - - HGNC:28498|Ensembl:ENSG00000169085|HPRD:14565|Vega:OTTHUMG00000156998 8 8q13.1 chromosome 8 open reading frame 46 protein-coding C8orf46 chromosome 8 open reading frame 46 O uncharacterized protein C8orf46 20121230 -9606 254783 OR6C74 - - HGNC:31303|Ensembl:ENSG00000197706|HPRD:15060|Vega:OTTHUMG00000165162 12 12q13.2 olfactory receptor, family 6, subfamily C, member 74 protein-coding OR6C74 olfactory receptor, family 6, subfamily C, member 74 O olfactory receptor 6C74 20121230 -9606 254786 OR6C3 - OST709 HGNC:15437|Ensembl:ENSG00000205329|HPRD:15057|Vega:OTTHUMG00000169861 12 12q13.2 olfactory receptor, family 6, subfamily C, member 3 protein-coding OR6C3 olfactory receptor, family 6, subfamily C, member 3 O HSA8|olfactory receptor 6C3 20121230 -9606 254827 NAALADL2 - - HGNC:23219|MIM:608806|Ensembl:ENSG00000177694|HPRD:16388|Vega:OTTHUMG00000157120 3 3q26.31 N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 O N-acetylated alpha-linked acidic dipeptidase 2|NAALADase L2|glutamate carboxypeptidase II-type non-peptidase homologue|inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 20121230 -9606 254863 TMEM256 - C17orf61 HGNC:28618|Ensembl:ENSG00000205544|HPRD:17548|Vega:OTTHUMG00000132900 17 17p13.1 transmembrane protein 256 protein-coding TMEM256 transmembrane protein 256 O UPF0451 protein C17orf61 20121230 -9606 254879 OR2T6 - OR2T6P|OR2T9|OST703 HGNC:15018|Ensembl:ENSG00000198104|HPRD:17711|Vega:OTTHUMG00000040448 1 1q44 olfactory receptor, family 2, subfamily T, member 6 protein-coding OR2T6 olfactory receptor, family 2, subfamily T, member 6 O olfactory receptor 2T6|olfactory receptor 2T9|olfactory receptor, family 2, subfamily T, member 6 pseudogene|seven transmembrane helix receptor 20121230 -9606 254887 ZDHHC23 - NIDD HGNC:28654|Ensembl:ENSG00000184307|HPRD:15717|Vega:OTTHUMG00000159335 3 3q13.31 zinc finger, DHHC-type containing 23 protein-coding ZDHHC23 zinc finger, DHHC-type containing 23 O DHHC-23|probable palmitoyltransferase ZDHHC23|zinc finger DHHC domain-containing protein 23|zinc finger, DHHC domain containing 23 20121230 -9606 254896 LOC254896 - - - 8 8p21.2 uncharacterized LOC254896 miscRNA - - - - 20121230 -9606 254910 LCE5A - LEP18|SPRL5A HGNC:16614|MIM:612619|Ensembl:ENSG00000186207|HPRD:17265|Vega:OTTHUMG00000014401 1 1q21.3 late cornified envelope 5A protein-coding LCE5A late cornified envelope 5A O late cornified envelope protein 5A|late envelope protein 18|small proline rich-like (epidermal differentiation complex) 5A|small proline-rich-like epidermal differentiation complex protein 5A 20121230 -9606 254948 RPL9P8 - RPL9_15_1459 HGNC:30334 15 15q25.2 ribosomal protein L9 pseudogene 8 pseudo RPL9P8 ribosomal protein L9 pseudogene 8 O - 20121230 -9606 254950 KRTAP15-1 - KAP15.1 HGNC:18927|Ensembl:ENSG00000186970|HPRD:11204|Vega:OTTHUMG00000057784 21 21q22.1 keratin associated protein 15-1 protein-coding KRTAP15-1 keratin associated protein 15-1 O keratin-associated protein 15-1 20121230 -9606 254956 MORN5 RP11-498E2.5 C9orf113|C9orf18 HGNC:17841|Ensembl:ENSG00000185681|HPRD:12947|Vega:OTTHUMG00000020599 9 9q33.2 MORN repeat containing 5 protein-coding MORN5 MORN repeat containing 5 O MORN repeat-containing protein 5 20121230 -9606 254958 REXO1L1 - GOR HGNC:24660|Ensembl:ENSG00000205176|HPRD:17049|Vega:OTTHUMG00000164949 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1 protein-coding REXO1L1 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1 O GOR antigen|RNA exonuclease 1 homolog-like 1|antigen GOR homolog|exonuclease GOR 20121230 -9606 254973 OR1L4 - OR1L5|OR9-29|OR9-E|OST046 HGNC:8216|Ensembl:ENSG00000136939|HPRD:14922|Vega:OTTHUMG00000020620 9 9q33.2 olfactory receptor, family 1, subfamily L, member 4 protein-coding OR1L4 olfactory receptor, family 1, subfamily L, member 4 O olfactory receptor 1L4|olfactory receptor 1L5|olfactory receptor 9-E|olfactory receptor OR9-29|olfactory receptor, family 1, subfamily L, member 5 20121230 -9606 255022 CALHM1 - FAM26C HGNC:23494|MIM:612234|Ensembl:ENSG00000185933|HPRD:16879|Vega:OTTHUMG00000018991 10 10q24.33 calcium homeostasis modulator 1 protein-coding CALHM1 calcium homeostasis modulator 1 O calcium homeostasis modulator protein 1|family with sequence similarity 26, member C 20121230 -9606 255025 LOC255025 - - - 3 3q11.2 uncharacterized LOC255025 miscRNA - - - - 20121230 -9606 255027 MPV17L - M-LPH|MLPH1|MLPH2|MPV17L1 HGNC:26827|Ensembl:ENSG00000156968|HPRD:08803|Vega:OTTHUMG00000129882 16 16p13.11 MPV17 mitochondrial membrane protein-like protein-coding MPV17L MPV17 mitochondrial membrane protein-like O M-LP homolog|Mpv17-like protein type 1|Mpv17-like protein type 2|mpv17-like protein 20121230 -9606 255031 FLJ35390 - - - 7 7p13 uncharacterized LOC255031 miscRNA - - - - 20121230 -9606 255042 MGC16723 - - - 19 19q13.42 uncharacterized protein MGC16723 protein-coding - - - uncharacterized protein LOC255042 20111025 -9606 255043 TMEM86B - - HGNC:28448|Ensembl:ENSG00000180089|HPRD:14540|Vega:OTTHUMG00000180703 19 19q13.42 transmembrane protein 86B protein-coding TMEM86B transmembrane protein 86B O lysoplasmalogenase 20121230 -9606 255057 C19orf26 - DOS HGNC:28617|Ensembl:ENSG00000099625|HPRD:16627|Vega:OTTHUMG00000180141 19 19p13.3 chromosome 19 open reading frame 26 protein-coding C19orf26 chromosome 19 open reading frame 26 O downstream of Stk11|protein Dos 20121230 -9606 255061 TAC4 - EK|HK-1|HK1|PPT-C HGNC:16641|MIM:607833|Ensembl:ENSG00000176358|HPRD:09701|Vega:OTTHUMG00000161830 17 17q21.33 tachykinin 4 (hemokinin) protein-coding TAC4 tachykinin 4 (hemokinin) O endokinin|preprotachykinin-C|tachykinin-4 20121230 -9606 255082 CASC2 - C10orf5 HGNC:22933|MIM:608598|HPRD:12266 10 10q26.11 cancer susceptibility candidate 2 (non-protein coding) miscRNA CASC2 cancer susceptibility candidate 2 (non-protein coding) O - 20121230 -9606 255101 CCDC108 - - HGNC:25325|MIM:614270|Ensembl:ENSG00000181378|HPRD:13201|HPRD:17534|Vega:OTTHUMG00000133013 2 2q35 coiled-coil domain containing 108 protein-coding CCDC108 coiled-coil domain containing 108 O coiled-coil domain-containing protein 108 20121230 -9606 255104 TMCO4 - RP5-1056L3.6 HGNC:27393|Ensembl:ENSG00000162542|HPRD:14140|Vega:OTTHUMG00000002697 1 1p36.13 transmembrane and coiled-coil domains 4 protein-coding TMCO4 transmembrane and coiled-coil domains 4 O transmembrane and coiled-coil domain-containing protein 4 20121230 -9606 255119 C4orf22 - - HGNC:28554|Ensembl:ENSG00000197826|HPRD:14597|Vega:OTTHUMG00000130289 4 4q21.21 chromosome 4 open reading frame 22 protein-coding C4orf22 chromosome 4 open reading frame 22 O uncharacterized protein C4orf22 20121230 -9606 255130 LOC255130 - - - 4 4q12 uncharacterized LOC255130 miscRNA - - - - 20121230 -9606 255167 LOC255167 - - - 5 5p15.31 uncharacterized LOC255167 miscRNA - - - - 20121230 -9606 255177 LOC255177 - - - 15 15q22.2 uncharacterized LOC255177 unknown - - - - 20120508 -9606 255180 FLJ38723 - - HPRD:08792 15 15q22.2 uncharacterized FLJ38723 miscRNA - - - - 20121230 -9606 255187 LOC255187 hCG_1980447 - - 5 5q33.1 hCG1980447 unknown - - - - 20121230 -9606 255189 PLA2G4F - PLA2G4FZ HGNC:27396|Ensembl:ENSG00000168907|HPRD:17326|Vega:OTTHUMG00000172782 15 15q15.1 phospholipase A2, group IVF protein-coding PLA2G4F phospholipase A2, group IVF O cPLA2-zeta|cytosolic phospholipase A2 zeta 20121230 -9606 255193 CSNK1G2-AS1 - C19orf34 HGNC:28604|HPRD:16630 19 19p13.3 CSNK1G2 antisense RNA 1 miscRNA CSNK1G2-AS1 CSNK1G2 antisense RNA 1 O - 20121230 -9606 255208 LOC255208 - - - 1 1q42.13 tubulin, beta 8 class VIII pseudogene pseudo - - - - 20121230 -9606 255220 TXNDC8 RP11-427L11.2 SPTRX-3|TRX6|bA427L11.2 HGNC:31454|Ensembl:ENSG00000204193|HPRD:18251|Vega:OTTHUMG00000020481 9 9q31.3 thioredoxin domain containing 8 (spermatozoa) protein-coding TXNDC8 thioredoxin domain containing 8 (spermatozoa) O sperm-specific thioredoxin 3|spermatid-specific thioredoxin-3|spermatocyte/spermatid-specific thioredoxin-3|thioredoxin 6|thioredoxin domain-containing protein 8|thioredoxin-6 20121230 -9606 255231 MCOLN2 - TRP-ML2|TRPML2 HGNC:13357|MIM:607399|Ensembl:ENSG00000153898|HPRD:09584|Vega:OTTHUMG00000009954 1 1p22 mucolipin 2 protein-coding MCOLN2 mucolipin 2 O mucolipin-2 20121230 -9606 255239 ANKK1 - PKK2 HGNC:21027|MIM:608774|Ensembl:ENSG00000170209|HPRD:10580|Vega:OTTHUMG00000167715 11 11q23.2 ankyrin repeat and kinase domain containing 1 protein-coding ANKK1 ankyrin repeat and kinase domain containing 1 O X-kinase|ankyrin repeat and protein kinase domain-containing protein 1|protein kinase PKK2|sgK288|sugen kinase 288 20121230 -9606 255252 LRRC57 - - HGNC:26719|Ensembl:ENSG00000180979|HPRD:08212|Vega:OTTHUMG00000130679 15 15q15.2 leucine rich repeat containing 57 protein-coding LRRC57 leucine rich repeat containing 57 O leucine-rich repeat-containing protein 57 20121230 -9606 255275 MYADML2 hCG_1645289 - HGNC:34548|Ensembl:ENSG00000185105|Vega:OTTHUMG00000154388 17 17q25.3 myeloid-associated differentiation marker-like 2 protein-coding MYADML2 myeloid-associated differentiation marker-like 2 O myeloid-associated differentiation marker-like protein 2 20121230 -9606 255308 LOC255308 - - - 12 12p13.2 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa pseudogene pseudo - - - - 20121230 -9606 255313 CT47A11 RP6-166C19.11-001 CT47.11 HGNC:27397|MIM:300592|Ensembl:ENSG00000226929|HPRD:06619|Vega:OTTHUMG00000022310 X Xq24 cancer/testis antigen family 47, member A11 protein-coding CT47A11 cancer/testis antigen family 47, member A11 O cancer/testis CT47 family, member 11|cancer/testis antigen 47A 20121212 -9606 255320 SPCS2P - - HGNC:31885 15 15q15.2 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene pseudo SPCS2P signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene O - 20090331 -9606 255324 EPGN UNQ3072 ALGV3072|EPG|PRO9904 HGNC:17470|Ensembl:ENSG00000182585|HPRD:10866|Vega:OTTHUMG00000160869 4 4q13.3 epithelial mitogen homolog (mouse) protein-coding EPGN epithelial mitogen homolog (mouse) O epigen 20121230 -9606 255330 NUP210P1 - C3orf46 HGNC:27399 3 3q21.3 nucleoporin 210kDa pseudogene 1 pseudo NUP210P1 nucleoporin 210kDa pseudogene 1 O - 20121230 -9606 255349 TMEM211 - bA9F11.1 HGNC:33725|Ensembl:ENSG00000206069|HPRD:17327|Vega:OTTHUMG00000150790 22 22q11.23 transmembrane protein 211 protein-coding TMEM211 transmembrane protein 211 O - 20121230 -9606 255374 MBLAC1 - - HGNC:22180|Ensembl:ENSG00000214309|HPRD:18584|Vega:OTTHUMG00000154846 7 7q22.1 metallo-beta-lactamase domain containing 1 protein-coding MBLAC1 metallo-beta-lactamase domain containing 1 O metallo-beta-lactamase domain-containing protein 1 20121230 -9606 255394 TCP11L2 - - HGNC:28627|Ensembl:ENSG00000166046|HPRD:17555|Vega:OTTHUMG00000170087 12 12q23.3 t-complex 11, testis-specific-like 2 protein-coding TCP11L2 t-complex 11, testis-specific-like 2 O T-complex protein 11-like protein 2|t-complex 11-like 2 20121230 -9606 255403 ZNF718 - - HGNC:26889|HPRD:08291 4 4p16.3 zinc finger protein 718 protein-coding ZNF718 zinc finger protein 718 O - 20121230 -9606 255411 LOC255411 - - - 12 12q13.12 uncharacterized LOC255411 miscRNA - - - - 20121230 -9606 255426 RASGEF1C - - HGNC:27400|Ensembl:ENSG00000146090|HPRD:15212|Vega:OTTHUMG00000130914 5 5q35.3 RasGEF domain family, member 1C protein-coding RASGEF1C RasGEF domain family, member 1C O ras-GEF domain-containing family member 1C 20121230 -9606 255480 TBX5-AS1 - - HGNC:27402 12 12q24.21 TBX5 antisense RNA 1 miscRNA TBX5-AS1 TBX5 antisense RNA 1 O - 20121230 -9606 255488 RNF144B - IBRDC2|PIR2|bA528A10.3|p53RFP HGNC:21578|Ensembl:ENSG00000137393|HPRD:17126|Vega:OTTHUMG00000014322 6 6p22.3 ring finger protein 144B protein-coding RNF144B ring finger protein 144B O E3 ubiquitin-protein ligase RNF144B|IBR domain containing 2|IBR domain-containing protein 2|p53-inducible RING finger protein 20121230 -9606 255512 LOC255512 - - - 11 11p15.5 uncharacterized LOC255512 miscRNA - - - - 20121230 -9606 255520 ELMOD2 - 9830169G11Rik HGNC:28111|MIM:610196|Ensembl:ENSG00000179387|HPRD:13267|Vega:OTTHUMG00000133417 4 4q31.1 ELMO/CED-12 domain containing 2 protein-coding ELMOD2 ELMO/CED-12 domain containing 2 O ELMO domain containing 2|ELMO domain-containing protein 2 20121230 -9606 255620 UNC93B6 - - HGNC:34053 11 11q13.4 unc-93 homolog B6 (C. elegans) pseudo UNC93B6 unc-93 homolog B6 (C. elegans) O - 20121230 -9606 255626 HIST1H2BA - H2BFU|STBP|TSH2B|bA317E16.3 HGNC:18730|MIM:609904|Ensembl:ENSG00000146047|HPRD:11024|Vega:OTTHUMG00000014408 6 6p22.2 histone cluster 1, H2ba protein-coding HIST1H2BA histone cluster 1, H2ba O H2B histone family, member U, (testis-specific)|histone 1, H2ba|histone H2B type 1-A|histone H2B, testis|testis-specific histone H2B 20121230 -9606 255631 COL24A1 - - HGNC:20821|MIM:610025|Ensembl:ENSG00000171502|HPRD:10846|Vega:OTTHUMG00000010629 1 1p22.3 collagen, type XXIV, alpha 1 protein-coding COL24A1 collagen, type XXIV, alpha 1 O collagen alpha-1(XXIV) chain 20121230 -9606 255649 OOSP1 - - - 11 11q12.1 oocyte-secreted protein 1 homolog protein-coding - - - - 20120511 -9606 255654 LOC255654 - - - 1 1q44 uncharacterized LOC255654 miscRNA - - - - 20121230 -9606 255725 OR52B2 - OR11-70 HGNC:15207|Ensembl:ENSG00000255307|HPRD:15006|Vega:OTTHUMG00000165732 11 11p15.4 olfactory receptor, family 52, subfamily B, member 2 protein-coding OR52B2 olfactory receptor, family 52, subfamily B, member 2 O olfactory receptor 52B2|olfactory receptor OR11-70 20121230 -9606 255738 PCSK9 PSEC0052 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 HGNC:20001|MIM:607786|Ensembl:ENSG00000169174|HPRD:07080|Vega:OTTHUMG00000008136 1 1p32.3 proprotein convertase subtilisin/kexin type 9 protein-coding PCSK9 proprotein convertase subtilisin/kexin type 9 O convertase subtilisin/kexin type 9 preproprotein|neural apoptosis regulated convertase 1|subtilisin/kexin-like protease PC9 20121230 -9606 255743 NPNT UNQ295/PRO334 EGFL6L|POEM HGNC:27405|MIM:610306|Ensembl:ENSG00000168743|HPRD:14141|Vega:OTTHUMG00000161189 4 4q24 nephronectin protein-coding NPNT nephronectin O preosteoblast EGF-like repeat protein with MAM domain 20121230 -9606 255758 TCTEX1D2 - - HGNC:28482|Ensembl:ENSG00000213123|HPRD:14554|Vega:OTTHUMG00000155672 3 3q29 Tctex1 domain containing 2 protein-coding TCTEX1D2 Tctex1 domain containing 2 O tctex1 domain-containing protein 2 20121230 -9606 255762 PDZD9 - C16orf65 HGNC:28740|Ensembl:ENSG00000155714|HPRD:14667|Vega:OTTHUMG00000131586 16 16p12.2 PDZ domain containing 9 protein-coding PDZD9 PDZ domain containing 9 O PDZ domain-containing protein 9|PDZ domain-containing protein C16orf65 20121230 -9606 255783 PRR24 hCG_1820496 - HGNC:27406|Ensembl:ENSG00000257704|Vega:OTTHUMG00000170128 19 19q13.32 proline rich 24 protein-coding PRR24 proline rich 24 O proline-rich protein 24 20121230 -9606 255798 C3orf43 - - HGNC:27407|Ensembl:ENSG00000214097|Vega:OTTHUMG00000155581 3 3q29 chromosome 3 open reading frame 43 protein-coding C3orf43 chromosome 3 open reading frame 43 O uncharacterized protein C3orf43 20121230 -9606 255809 C19orf38 - HIDE1 HGNC:34073|Ensembl:ENSG00000214212|Vega:OTTHUMG00000180697 19 19p13.2 chromosome 19 open reading frame 38 protein-coding C19orf38 chromosome 19 open reading frame 38 O Highly expressed in immature dendritic cell transcript 1|protein HIDE1 20121230 -9606 255812 SDHAP1 - SDHAL1|SDHALP1 HGNC:32455 3 3q29 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 pseudo SDHAP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 O - 20121230 -9606 255877 BCL6B - BAZF|ZBTB28|ZNF62 HGNC:1002|MIM:608992|Ensembl:ENSG00000161940|HPRD:16414|Vega:OTTHUMG00000177882 17 17p13.1 B-cell CLL/lymphoma 6, member B protein-coding BCL6B B-cell CLL/lymphoma 6, member B O B-cell CLL/lymphoma 6 member B protein|B-cell CLL/lymphoma 6, member B (zinc finger protein)|bcl6-associated zinc finger protein|zinc finger protein 62 20121230 -9606 255919 CNEP1R1 - C16orf69|NEP1-R1|TMEM188|TMP125 HGNC:26759|Ensembl:ENSG00000205423|HPRD:08784|Vega:OTTHUMG00000173447 16 16q12.1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 O nuclear envelope phosphatase 1-regulatory subunit 1|nuclear envelope phosphatase-regulatory subunit 1|transmembrane protein 188 20121230 -9606 255926 ADAM5 - ADAM5P|TMDCII HGNC:212 8 8p11.22 ADAM metallopeptidase domain 5, pseudogene pseudo ADAM5 ADAM metallopeptidase domain 5, pseudogene O - 20121230 -9606 255928 SYT14 - SCAR11|sytXIV HGNC:23143|MIM:610949|Ensembl:ENSG00000143469|HPRD:11617|Vega:OTTHUMG00000036652 1 1q32.2 synaptotagmin XIV protein-coding SYT14 synaptotagmin XIV O synaptotagmin-14 20121230 -9606 255967 PAN3 RP11-179F17.3 - HGNC:29991|Ensembl:ENSG00000152520|HPRD:17818|Vega:OTTHUMG00000016645 13 13q12.2 PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) protein-coding PAN3 PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) O PAB-dependent poly(A)-specific ribonuclease subunit 3|PABP-dependent poly(A) nuclease 3|PABP1-dependent poly A-specific ribonuclease subunit PAN3 20121230 -9606 256006 ANKRD31 - - HGNC:26853|Ensembl:ENSG00000145700 5 5q13.3 ankyrin repeat domain 31 protein-coding ANKRD31 ankyrin repeat domain 31 O ankyrin repeat domain-containing protein 31|putative ankyrin repeat domain-containing protein 31 20121230 -9606 256021 LOC256021 - - Ensembl:ENSG00000257242|Vega:OTTHUMG00000170091 12 12q21.33 uncharacterized LOC256021 protein-coding - - - uncharacterized protein LOC256021 20121230 -9606 256051 ZNF549 - - HGNC:26632|Ensembl:ENSG00000121406|HPRD:15833 19 19q13.43 zinc finger protein 549 protein-coding ZNF549 zinc finger protein 549 O - 20121230 -9606 256076 COL6A5 - COL29A1|VWA4 HGNC:26674|MIM:611916|Ensembl:ENSG00000172752|HPRD:08196|Vega:OTTHUMG00000159712 3 3q22.1 collagen, type VI, alpha 5 protein-coding COL6A5 collagen, type VI, alpha 5 O collagen alpha-5(VI) chain|collagen, type XXIX, alpha 1|von Willebrand factor A domain-containing protein 4 20121230 -9606 256085 WRBP1 hCG_1790950 - HGNC:44010 4 4q25 tryptophan rich basic protein pseudogene 1 pseudo WRBP1 tryptophan rich basic protein pseudogene 1 O - 20121230 -9606 256126 SYCE2 - CESC1 HGNC:27411|MIM:611487|Ensembl:ENSG00000161860|Vega:OTTHUMG00000180562 19 19p13.2 synaptonemal complex central element protein 2 protein-coding SYCE2 synaptonemal complex central element protein 2 O - 20121230 -9606 256130 TMEM196 - - HGNC:22431|Ensembl:ENSG00000173452|HPRD:14617|Vega:OTTHUMG00000152504 7 7p21.1 transmembrane protein 196 protein-coding TMEM196 transmembrane protein 196 O - 20121230 -9606 256144 OR4C3 - OR11-98 HGNC:14697|Ensembl:ENSG00000176547|HPRD:17722|Vega:OTTHUMG00000166579 11 11p11.2 olfactory receptor, family 4, subfamily C, member 3 protein-coding OR4C3 olfactory receptor, family 4, subfamily C, member 3 O olfactory receptor 4C3|olfactory receptor OR11-98 20121230 -9606 256148 OR4S1 - OR11-100 HGNC:14705|Ensembl:ENSG00000176555|HPRD:14987|Vega:OTTHUMG00000166578 11 11p11.2 olfactory receptor, family 4, subfamily S, member 1 protein-coding OR4S1 olfactory receptor, family 4, subfamily S, member 1 O olfactory receptor 4S1|olfactory receptor OR11-100 20121230 -9606 256158 HMCN2 - - HGNC:21293 9 9q34.11 hemicentin 2 protein-coding HMCN2 hemicentin 2 O hemicentin-2 20121230 -9606 256190 OR4C50P - - HGNC:31274 11 11p11.12 olfactory receptor, family 4, subfamily C, member 50 pseudogene pseudo OR4C50P olfactory receptor, family 4, subfamily C, member 50 pseudogene O - 20121230 -9606 256223 CDRT15L2 - - HGNC:34075|Ensembl:ENSG00000214819|Vega:OTTHUMG00000059557 17 17p11.2 CMT1A duplicated region transcript 15-like 2 protein-coding CDRT15L2 CMT1A duplicated region transcript 15-like 2 O CMT1A duplicated region transcript 15 protein-like protein 20121230 -9606 256227 STEAP1B - - HGNC:41907|Ensembl:ENSG00000105889|Vega:OTTHUMG00000152529 7 7p15.3 STEAP family member 1B protein-coding STEAP1B STEAP family member 1B O STEAP family protein MGC87042 20121230 -9606 256236 NAPSB - NAP1L|NAP2|NAPB|NAPSBP HGNC:13396 19 19q13.33 napsin B aspartic peptidase, pseudogene pseudo NAPSB napsin B aspartic peptidase, pseudogene O - 20121230 -9606 256281 NUDT14 - UGPP|UGPPase HGNC:20141|MIM:609219|Ensembl:ENSG00000183828|HPRD:14847|Vega:OTTHUMG00000170372 14 14q32.33 nudix (nucleoside diphosphate linked moiety X)-type motif 14 protein-coding NUDT14 nudix (nucleoside diphosphate linked moiety X)-type motif 14 O UDP-sugar diphosphatase|UDPG pyrophosphatase|uridine diphosphate glucose pyrophosphatase 20121230 -9606 256297 PTF1A - PTF1-p48|bHLHa29 HGNC:23734|MIM:607194|Ensembl:ENSG00000168267|HPRD:09526|Vega:OTTHUMG00000017815 10 10p12.2 pancreas specific transcription factor, 1a protein-coding PTF1A pancreas specific transcription factor, 1a O bHLH transcription factor p48|class A basic helix-loop-helix protein 29|class II bHLH protein PTF1A|exocrine pancreas-specific transcription factor p48|p48 DNA-binding subunit of transcription factor PTF1|pancreas transcription factor 1 subunit alpha|pancreas-specific transcription factor 1a 20121230 -9606 256302 C17orf103 - Gtlf3b HGNC:30770|Ensembl:ENSG00000154035|HPRD:17527|Vega:OTTHUMG00000130764 17 17p11.2 chromosome 17 open reading frame 103 protein-coding C17orf103 chromosome 17 open reading frame 103 O gene trap locus F3b|protein GTLF3B|transcript expressed during hematopoiesis 2 20121230 -9606 256309 CCDC110 - CT52|KM-HN-1|KMHN1 HGNC:28504|MIM:609488|Ensembl:ENSG00000168491|HPRD:11335|Vega:OTTHUMG00000160415 4 4q35.1 coiled-coil domain containing 110 protein-coding CCDC110 coiled-coil domain containing 110 O cancer/testis antigen 52|cancer/testis antigen KM-HN-1|coiled-coil domain-containing protein 110 20121230 -9606 256329 C11orf35 - - HGNC:28561|Ensembl:ENSG00000185522|HPRD:14600|Vega:OTTHUMG00000132005 11 11p15.5 chromosome 11 open reading frame 35 protein-coding C11orf35 chromosome 11 open reading frame 35 O uncharacterized protein C11orf35 20121230 -9606 256355 RPS2P32 - RPS2_14_794 HGNC:30518 7 7p15.3 ribosomal protein S2 pseudogene 32 pseudo RPS2P32 ribosomal protein S2 pseudogene 32 O - 20121230 -9606 256356 GK5 - - HGNC:28635|Ensembl:ENSG00000175066|HPRD:14612|Vega:OTTHUMG00000133572 3 3q23 glycerol kinase 5 (putative) protein-coding GK5 glycerol kinase 5 (putative) O ATP:glycerol 3-phosphotransferase 5|GK 5|glycerokinase 5|putative glycerol kinase 5 20121230 -9606 256364 EML3 - ELP95 HGNC:26666|Ensembl:ENSG00000149499|HPRD:08193|Vega:OTTHUMG00000149817 11 11q12.3 echinoderm microtubule associated protein like 3 protein-coding EML3 echinoderm microtubule associated protein like 3 O EMAP-3|echinoderm microtubule-associated protein-like 3 20121230 -9606 256369 LINC00521 - C14orf48|c14_5713 HGNC:19860|HPRD:12651 14 14q32.12 long intergenic non-protein coding RNA 521 miscRNA LINC00521 long intergenic non-protein coding RNA 521 O - 20121230 -9606 256374 LOC256374 - - - 3 3q22.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 256380 SCML4 RP1-47M23.1 dJ47M23.1 HGNC:21397|Ensembl:ENSG00000146285|HPRD:10212|Vega:OTTHUMG00000015313 6 6q21 sex comb on midleg-like 4 (Drosophila) protein-coding SCML4 sex comb on midleg-like 4 (Drosophila) O sex comb on midleg-like protein 4 20121230 -9606 256394 SERPINA11 - - HGNC:19193|Ensembl:ENSG00000186910|Vega:OTTHUMG00000171348 14 14q32.13 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 protein-coding SERPINA11 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 O antiproteinase-like 2|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11|serpin A11 20121230 -9606 256435 ST6GALNAC3 UNQ2787/PRO7177 PRO7177|SIAT7C|ST6GALNACIII|STY HGNC:19343|MIM:610133|Ensembl:ENSG00000184005|HPRD:15341|Vega:OTTHUMG00000009615 1 1p31.1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 O GalNAc alpha-2,6-sialyltransferase III|SIAT7-C|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltran|ST6GALNAC III|alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3|alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase III|sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C|sialyltransferase 7C 20121230 -9606 256471 MFSD8 - CLN7 HGNC:28486|MIM:611124|Ensembl:ENSG00000164073|HPRD:14557|Vega:OTTHUMG00000133303 4 4q28.2 major facilitator superfamily domain containing 8 protein-coding MFSD8 major facilitator superfamily domain containing 8 O ceroid-lipofuscinosis neuronal protein 7|ceroid-lipofuscinosis, neuronal 7, late infantile|major facilitator superfamily domain-containing protein 8 20121230 -9606 256472 TMEM151A - TMEM151 HGNC:28497|Ensembl:ENSG00000179292|HPRD:14564|Vega:OTTHUMG00000166920 11 11q13.2 transmembrane protein 151A protein-coding TMEM151A transmembrane protein 151A O transmembrane protein 151 20121230 -9606 256536 TCERG1L - - HGNC:23533|Ensembl:ENSG00000176769|HPRD:18170|Vega:OTTHUMG00000019276 10 10q26.3 transcription elongation regulator 1-like protein-coding TCERG1L transcription elongation regulator 1-like O 5730476P14Rik|transcription elongation regulator 1-like protein 20121230 -9606 256586 LYSMD2 - - HGNC:28571|Ensembl:ENSG00000140280|HPRD:17531|Vega:OTTHUMG00000131804 15 15q21.2 LysM, putative peptidoglycan-binding, domain containing 2 protein-coding LYSMD2 LysM, putative peptidoglycan-binding, domain containing 2 O lysM and putative peptidoglycan-binding domain-containing protein 2 20121230 -9606 256643 CXorf23 RP11-24O6.3 - HGNC:27413|Ensembl:ENSG00000173681|HPRD:06620|Vega:OTTHUMG00000021226 X Xp22.12 chromosome X open reading frame 23 protein-coding CXorf23 chromosome X open reading frame 23 O uncharacterized protein CXorf23 20121230 -9606 256646 C15orf55 - FAM22H|NUT HGNC:29919|MIM:608963|Ensembl:ENSG00000184507|HPRD:10606|Vega:OTTHUMG00000172348 15 15q14 chromosome 15 open reading frame 55 protein-coding C15orf55 chromosome 15 open reading frame 55 O nuclear protein in testis|protein NUT 20121230 -9606 256676 LOC256676 - - - 11 11q13.1 uncharacterized LOC256676 unknown - - - - 20120710 -9606 256691 MAMDC2 RP11-373A9.2 - HGNC:23673|MIM:612879|Ensembl:ENSG00000165072|HPRD:14353|Vega:OTTHUMG00000019990 9 9q21.12 MAM domain containing 2 protein-coding MAMDC2 MAM domain containing 2 O MAM domain containing 1|MAM domain-containing protein 2|MAM domain-containing proteoglycan|mamcan 20121230 -9606 256710 GLIPR1L1 UNQ2972/PRO7434 ALKN2972|PRO7434 HGNC:28392|MIM:610395|Ensembl:ENSG00000173401|HPRD:14514|Vega:OTTHUMG00000169755 12 12q21.2 GLI pathogenesis-related 1 like 1 protein-coding GLIPR1L1 GLI pathogenesis-related 1 like 1 O GLIPR1-like protein 1 20121230 -9606 256714 MAP7D2 RP11-393H10.2 - HGNC:25899|Ensembl:ENSG00000184368|HPRD:06525|Vega:OTTHUMG00000021228 X Xp22.12 MAP7 domain containing 2 protein-coding MAP7D2 MAP7 domain containing 2 O MAP7 domain containing 2 protein varaint 1|MAP7 domain containing 2 protein varaint 2|MAP7 domain-containing protein 2 20121230 -9606 256764 WDR72 - AI2A3 HGNC:26790|MIM:613214|Ensembl:ENSG00000166415|HPRD:10987|Vega:OTTHUMG00000131939 15 15q21.3 WD repeat domain 72 protein-coding WDR72 WD repeat domain 72 O WD repeat-containing protein 72 20121230 -9606 256815 C10orf67 RP11-792P23.2 - HGNC:28716|Ensembl:ENSG00000179133|HPRD:12585|Vega:OTTHUMG00000017818 10 10p12.2 chromosome 10 open reading frame 67 protein-coding C10orf67 chromosome 10 open reading frame 67 O uncharacterized protein C10orf67 20121230 -9606 256824 LOC256824 - - - 2 - cryptic gene protein-coding - - - - 20100404 -9606 256880 LOC256880 - - - 4 4q23 uncharacterized LOC256880 miscRNA - - - - 20121230 -9606 256892 OR51F1 - OR11-21|OR51F1P HGNC:15196|Ensembl:ENSG00000188069|HPRD:17737|Vega:OTTHUMG00000066503 11 11p15.4 olfactory receptor, family 51, subfamily F, member 1 protein-coding OR51F1 olfactory receptor, family 51, subfamily F, member 1 O olfactory receptor 51F1|olfactory receptor OR11-21 pseudogene|olfactory receptor, family 51, subfamily F, member 1 pseudogene 20121230 -9606 256933 NPB - L7|PPL7|PPNPB HGNC:30099|MIM:607996|Ensembl:ENSG00000183979|HPRD:16267|Vega:OTTHUMG00000177983 17 17q25.3 neuropeptide B protein-coding NPB neuropeptide B O preproneuropeptide B|preproprotein L7 20121230 -9606 256949 KANK3 - ANKRD47 HGNC:24796|MIM:614611|Ensembl:ENSG00000186994|HPRD:13520 19 19p13.2 KN motif and ankyrin repeat domains 3 protein-coding KANK3 KN motif and ankyrin repeat domains 3 O KN motif and ankyrin repeat domain-containing protein 3|ankyrin repeat domain 47|ankyrin repeat domain-containing protein 47|kidney ankyrin repeat-containing protein 3 20121230 -9606 256957 C17orf66 - - HGNC:26548|Ensembl:ENSG00000172653|HPRD:08142|Vega:OTTHUMG00000132950 17 17q12 chromosome 17 open reading frame 66 protein-coding C17orf66 chromosome 17 open reading frame 66 O uncharacterized protein C17orf66 20121230 -9606 256979 SUN3 tcag7.707 SUNC1 HGNC:22429|Ensembl:ENSG00000164744|HPRD:15451|Vega:OTTHUMG00000155646 7 7p12.3 Sad1 and UNC84 domain containing 3 protein-coding SUN3 Sad1 and UNC84 domain containing 3 O SUN domain-containing protein 3|Sad1 and UNC84 domain containing 1|hypothetical protein MGC33329|sad1/unc-84 domain-containing protein 1 20121230 -9606 256987 SERINC5 - C5orf12|TPO1 HGNC:18825|MIM:614551|Ensembl:ENSG00000164300|HPRD:12828|Vega:OTTHUMG00000162563 5 5q14.1 serine incorporator 5 protein-coding SERINC5 serine incorporator 5 O - 20121230 -9606 257000 TINCR PP10933 LINC00036|NCRNA00036|PLAC2 HGNC:14607|HPRD:17859 19 19p13.3 tissue differentiation-inducing non-protein coding RNA miscRNA TINCR tissue differentiation-inducing non-protein coding RNA O - 20121230 -9606 257019 FRMD3 RP11-439K3.2 4.1O|EPB41L4O|EPB41LO|P410 HGNC:24125|MIM:607619|Ensembl:ENSG00000172159|HPRD:07402|Vega:OTTHUMG00000020103 9 9q21.32 FERM domain containing 3 protein-coding FRMD3 FERM domain containing 3 O FERM domain-containing protein 3|band 4.1-like protein 4|band 4.1-like protein 4O|ovary type protein 4.1|protein 4.1O 20121230 -9606 257044 C1orf101 - RP11-523K4.1 HGNC:28491|Ensembl:ENSG00000179397|HPRD:14561|Vega:OTTHUMG00000040103 1 1q44 chromosome 1 open reading frame 101 protein-coding C1orf101 chromosome 1 open reading frame 101 O uncharacterized protein C1orf101 20121230 -9606 257062 CATSPERD - TMEM146 HGNC:28598|Ensembl:ENSG00000174898|HPRD:17541|Vega:OTTHUMG00000143036 19 19p13.3 catsper channel auxiliary subunit delta protein-coding CATSPERD catsper channel auxiliary subunit delta O catSper-delta|catSperdelta|cation channel sperm-associated protein subunit delta|transmembrane protein 146 20121230 -9606 257068 PLCXD2 - - HGNC:26462|Ensembl:ENSG00000240891|HPRD:07114|Vega:OTTHUMG00000159279 3 3q13.2 phosphatidylinositol-specific phospholipase C, X domain containing 2 protein-coding PLCXD2 phosphatidylinositol-specific phospholipase C, X domain containing 2 O PI-PLC X domain-containing protein 2 20121230 -9606 257093 PSME2P1 - PSME2P HGNC:20632 5 5q21 proteasome activator subunit 2 pseudogene 1 pseudo PSME2P1 proteasome activator subunit 2 pseudogene 1 O - 20121230 -9606 257101 ZNF683 RP11-569G9.6 - HGNC:28495|Ensembl:ENSG00000176083|HPRD:14563|Vega:OTTHUMG00000003521 1 1p36.11 zinc finger protein 683 protein-coding ZNF683 zinc finger protein 683 O hypothetical protein MGC33414 20121230 -9606 257103 LINC00205 - C21orf86|NCRNA00205 HGNC:16420|HPRD:10771 21 21q22.3 long intergenic non-protein coding RNA 205 unknown LINC00205 long intergenic non-protein coding RNA 205 O - 20121021 -9606 257106 ARHGAP30 RP11-544M22.6 - HGNC:27414|MIM:614264|Ensembl:ENSG00000186517|HPRD:11250|Vega:OTTHUMG00000031477 1 1q23.3 Rho GTPase activating protein 30 protein-coding ARHGAP30 Rho GTPase activating protein 30 O rho GTPase-activating protein 30|rho-type GTPase-activating protein 30 20121230 -9606 257144 GCSAM - GCAT2|GCET2|HGAL HGNC:20253|MIM:607792|Ensembl:ENSG00000174500|HPRD:09695|Vega:OTTHUMG00000159231 3 3q13.2 germinal center-associated, signaling and motility protein-coding GCSAM germinal center-associated, signaling and motility O germinal center B-cell-expressed transcript 2 protein|germinal center expressed transcript 2|germinal center-associated lymphoma protein|germinal center-associated signaling and motility protein|human germinal center-associated lymphoma 20121230 -9606 257152 LOC257152 - - - 8 8q22.3 uncharacterized LOC257152 protein-coding - - - - 20120508 -9606 257160 RNF214 - - HGNC:25335|Ensembl:ENSG00000167257|HPRD:16815|Vega:OTTHUMG00000167069 11 11q23.3 ring finger protein 214 protein-coding RNF214 ring finger protein 214 O RING finger protein 214 20121230 -9606 257169 C9orf43 - - HGNC:23570|Ensembl:ENSG00000157653|HPRD:12959|Vega:OTTHUMG00000020526 9 9q32 chromosome 9 open reading frame 43 protein-coding C9orf43 chromosome 9 open reading frame 43 O uncharacterized protein C9orf43 20121230 -9606 257177 C1orf192 RP11-122G18.4 - HGNC:32325|Ensembl:ENSG00000188931|HPRD:13257|Vega:OTTHUMG00000034462 1 1q23.3 chromosome 1 open reading frame 192 protein-coding C1orf192 chromosome 1 open reading frame 192 O UPF0740 protein C1orf192 20121230 -9606 257194 NEGR1 UNQ2433 DMML2433|IGLON4|KILON|Ntra HGNC:17302|MIM:613173|Ensembl:ENSG00000172260|HPRD:14820|Vega:OTTHUMG00000009698 1 1p31.1 neuronal growth regulator 1 protein-coding NEGR1 neuronal growth regulator 1 O IgLON family member 4|a kindred of IgLON|neurotractin 20121230 -9606 257202 GPX6 - GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1 HGNC:4558|MIM:607913|Ensembl:ENSG00000198704|HPRD:12132|Vega:OTTHUMG00000044828 6 6p22.1 glutathione peroxidase 6 (olfactory) protein-coding GPX6 glutathione peroxidase 6 (olfactory) O glutathione peroxidase 6|glutathione peroxidase pseudogene 3 20121230 -9606 257203 DSCR9 - NCRNA00038 HGNC:16301|HPRD:10925 21 21q22.13 Down syndrome critical region gene 9 (non-protein coding) miscRNA DSCR9 Down syndrome critical region gene 9 (non-protein coding) O - 20121230 -9606 257218 SHPRH RP11-545I5.1 bA545I5.2 HGNC:19336|MIM:608048|Ensembl:ENSG00000146414|HPRD:10476|Vega:OTTHUMG00000015750 6 6q24.3 SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase protein-coding SHPRH SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase O 2610103K11Rik|E3 ubiquitin-protein ligase SHPRH|SNF2, histone-linker, PHD and RING finger domain-containing helicase 20121230 -9606 257236 CCDC96 - - HGNC:26900|Ensembl:ENSG00000173013|HPRD:08297|Vega:OTTHUMG00000125511 4 4p16.1 coiled-coil domain containing 96 protein-coding CCDC96 coiled-coil domain containing 96 O coiled-coil domain-containing protein 96 20121230 -9606 257240 KLHL34 RP11-450P7.3 - HGNC:26634|Ensembl:ENSG00000185915|HPRD:06558|Vega:OTTHUMG00000021234 X Xp22.12 kelch-like 34 (Drosophila) protein-coding KLHL34 kelch-like 34 (Drosophila) O kelch-like protein 34 20121230 -9606 257313 UTS2D - U2B|URP HGNC:30894|Ensembl:ENSG00000188958|HPRD:15630|Vega:OTTHUMG00000156192 3 3q28 urotensin 2 domain containing protein-coding UTS2D urotensin 2 domain containing O U-IIB|UIIB|urotensin II-related peptide|urotensin IIB|urotensin-2 domain-containing protein|urotensin-2B 20121230 -9606 257357 BRWD1-IT2 - C21orf87|NCRNA00257 HGNC:16423 21 21q22.2 BRWD1 intronic transcript 2 (non-protein coding) miscRNA BRWD1-IT2 BRWD1 intronic transcript 2 (non-protein coding) O - 20121230 -9606 257358 LOC257358 - - - 5 5q35.1 uncharacterized LOC257358 miscRNA - - - - 20121230 -9606 257364 SNX33 - SH3PX3|SH3PXD3C|SNX30 HGNC:28468|Ensembl:ENSG00000173548|HPRD:11331|Vega:OTTHUMG00000142835 15 15q24.2 sorting nexin 33 protein-coding SNX33 sorting nexin 33 O SH3 and PX domain containing 3|SH3 and PX domain-containing protein 3|sorting nexin-33 20121230 -9606 257396 LOC257396 - - - 5 5q11.2 uncharacterized LOC257396 miscRNA - - - - 20121230 -9606 257397 TAB3 - MAP3K7IP3|NAP1 HGNC:30681|MIM:300480|Ensembl:ENSG00000157625|HPRD:06738|Vega:OTTHUMG00000021329 X Xp21.2 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding TAB3 TGF-beta activated kinase 1/MAP3K7 binding protein 3 O NF-kappa-B-activating protein 1|NFkB activating protein 1|TAB-3|TAK1-binding protein 3|TGF-beta-activated kinase 1 and MAP3K7-binding protein 3|TGF-beta-activated kinase 1-binding protein 3|mitogen-activated protein kinase kinase kinase 7 interacting protein 3 20121230 -9606 257407 C2orf72 - - HGNC:27418|Ensembl:ENSG00000204128|Vega:OTTHUMG00000153996 2 2q37.1 chromosome 2 open reading frame 72 protein-coding C2orf72 chromosome 2 open reading frame 72 O uncharacterized protein C2orf72 20121230 -9606 257415 FAM133B - - HGNC:28629|Ensembl:ENSG00000234545|HPRD:17557|Vega:OTTHUMG00000155863 7 7q21.2 family with sequence similarity 133, member B protein-coding FAM133B family with sequence similarity 133, member B O protein FAM133B 20121230 -9606 257468 MEIS3P2 - - HGNC:17638 17 17p11.2 Meis homeobox 3 pseudogene 2 pseudo MEIS3P2 Meis homeobox 3 pseudogene 2 O - 20121230 -9606 257629 ANKS4B - HARP HGNC:26795|MIM:609901|Ensembl:ENSG00000175311|HPRD:08794|Vega:OTTHUMG00000177371 16 16p12.2 ankyrin repeat and sterile alpha motif domain containing 4B protein-coding ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B O ankyrin repeat and SAM domain-containing protein 4B|harmonin-interacting ankyrin repeat-containing protein|harmonin-interacting ankyrin-repeat containing protein 20121230 -9606 257641 NPCA1 - NPC1 MIM:607107 4 4p15.1-q12 Nasopharyngeal carcinoma 1 unknown - - - - 20121212 -9606 258010 SVIP - - HGNC:25238|Ensembl:ENSG00000198168|Vega:OTTHUMG00000166072 11 11p14.2 small VCP/p97-interacting protein protein-coding SVIP small VCP/p97-interacting protein O - 20121230 -9606 259173 ALS2CL - RN49018 HGNC:20605|MIM:612402|Ensembl:ENSG00000178038|HPRD:10643|Vega:OTTHUMG00000128673 3 3p21.31 ALS2 C-terminal like protein-coding ALS2CL ALS2 C-terminal like O ALS2 C-terminal-like protein 20121230 -9606 259197 NCR3 DAAP-90L16.3 1C7|CD337|LY117|MALS|NKp30 HGNC:19077|MIM:611550|Ensembl:ENSG00000204475|HPRD:11384|Vega:OTTHUMG00000031123 6 6p21.3 natural cytotoxicity triggering receptor 3 protein-coding NCR3 natural cytotoxicity triggering receptor 3 O NK-p30|activating NK-A1 receptor|activating natural killer receptor p30|lymphocyte antigen 117|natural killer cell p30-related protein 20121230 -9606 259215 LY6G6F DADB-127H9.8 C6orf21|G6f|LY6G6D|NG32 HGNC:13933|MIM:611404|Ensembl:ENSG00000204424|HPRD:12878|Vega:OTTHUMG00000031252 6 6p21 lymphocyte antigen 6 complex, locus G6F protein-coding LY6G6F lymphocyte antigen 6 complex, locus G6F O lymphocyte antigen 6 complex locus protein G6f|lymphocyte antigen 6 complex, locus G6D 20121230 -9606 259217 HSPA12A - - HGNC:19022|MIM:610701|Ensembl:ENSG00000165868|Vega:OTTHUMG00000019107 10 10q26.12 heat shock 70kDa protein 12A protein-coding HSPA12A heat shock 70kDa protein 12A O heat shock 70 kDa protein 12A|heat shock 70kD protein 12A 20121230 -9606 259230 SGMS1 - MOB|MOB1|SMS1|TMEM23|hmob33 HGNC:29799|MIM:611573|Ensembl:ENSG00000198964|HPRD:18203|Vega:OTTHUMG00000018231 10 10q11.2 sphingomyelin synthase 1 protein-coding SGMS1 sphingomyelin synthase 1 O medulla oblongata-derived protein|phosphatidylcholine:ceramide cholinephosphotransferase 1|protein Mob|transmembrane protein 23 20121230 -9606 259232 NALCN - CanIon|VGCNL1|bA430M15.1 HGNC:19082|MIM:611549|Ensembl:ENSG00000102452|HPRD:15647|Vega:OTTHUMG00000017295 13 13q32.3 sodium leak channel, non-selective protein-coding NALCN sodium leak channel, non-selective O four repeat voltage-gated ion channel|sodium leak channel non-selective protein|voltage gated channel like 1|voltage gated channel-like protein 1 20121230 -9606 259234 DSCR10 - - HGNC:16302|HPRD:10922 21 21q22.13 Down syndrome critical region gene 10 (non-protein coding) miscRNA DSCR10 Down syndrome critical region gene 10 (non-protein coding) O - 20121230 -9606 259236 TMIE - DFNB6 HGNC:30800|MIM:607237|Ensembl:ENSG00000181585|HPRD:06252|Vega:OTTHUMG00000149909 3 3p21 transmembrane inner ear protein-coding TMIE transmembrane inner ear O transmembrane inner ear expressed protein|transmembrane inner ear protein 20121230 -9606 259239 WFDC11 - WAP11 HGNC:20478|Ensembl:ENSG00000180083|HPRD:15673|Vega:OTTHUMG00000046330 20 20q13.12 WAP four-disulfide core domain 11 protein-coding WFDC11 WAP four-disulfide core domain 11 O protease inhibitor WAP11|protein WFDC11 20121230 -9606 259240 WFDC9 - WAP9|dJ688G8.2 HGNC:20380|Ensembl:ENSG00000180205|HPRD:15678|Vega:OTTHUMG00000046332 20 20q13.12 WAP four-disulfide core domain 9 protein-coding WFDC9 WAP four-disulfide core domain 9 O protein WFDC9 20121230 -9606 259249 MRGPRX1 - GPCR|MRGX1|SNSR4 HGNC:17962|MIM:607227|Ensembl:ENSG00000170255|HPRD:06246|Vega:OTTHUMG00000162655 11 11p15.1|11 MAS-related GPR, member X1 protein-coding MRGPRX1 MAS-related GPR, member X1 O G protein-coupled receptor MRGX1|G protein-coupled receptor SNSR3|mas-related G-protein coupled receptor member X1|sensory neuron-specific G-protein coupled receptor 3/4 20121230 -9606 259265 bA255A11.4 - - - 9 9p13.3 melanoma antigen pseudogene pseudo - - - - 20121230 -9606 259266 ASPM RP11-32D17.1 ASP|Calmbp1|MCPH5 HGNC:19048|MIM:605481|Ensembl:ENSG00000066279|HPRD:08384|Vega:OTTHUMG00000036277 1 1q31 asp (abnormal spindle) homolog, microcephaly associated (Drosophila) protein-coding ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) O abnormal spindle-like microcephaly-associated protein 20121230 -9606 259282 BOD1L1 - BOD1L|FAM44A HGNC:31792|Ensembl:ENSG00000038219|HPRD:08156|Vega:OTTHUMG00000090659 4 4p16.1 biorientation of chromosomes in cell division 1-like 1 protein-coding BOD1L1 biorientation of chromosomes in cell division 1-like 1 O biorientation of chromosomes in cell division protein 1-like 1|family with sequence similarity 44, member A 20121230 -9606 259283 MDS2 RP11-223J15.1 - HGNC:29633|MIM:607305 1 1p36 myelodysplastic syndrome 2 translocation associated miscRNA MDS2 myelodysplastic syndrome 2 translocation associated O - 20121230 -9606 259285 TAS2R39 - T2R39|T2R57 HGNC:18886|Ensembl:ENSG00000236398|HPRD:18149|Vega:OTTHUMG00000152636 7 7q34 taste receptor, type 2, member 39 protein-coding TAS2R39 taste receptor, type 2, member 39 O taste receptor type 2 member 39|taste receptor type 2 member 57 20121230 -9606 259286 TAS2R40 - GPR60|T2R40|T2R58 HGNC:18885|MIM:613964|Ensembl:ENSG00000221937|HPRD:18150|Vega:OTTHUMG00000152638 7 7q34 taste receptor, type 2, member 40 protein-coding TAS2R40 taste receptor, type 2, member 40 O G protein-coupled receptor 60|G-protein coupled receptor 60|taste receptor type 2 member 40|taste receptor type 2 member 58 20121230 -9606 259287 TAS2R41 - T2R41|T2R59 HGNC:18883|MIM:613965|Ensembl:ENSG00000221855|HPRD:18151|Vega:OTTHUMG00000155892 7 7q35 taste receptor, type 2, member 41 protein-coding TAS2R41 taste receptor, type 2, member 41 O taste receptor type 2 member 41|taste receptor type 2 member 59 20121230 -9606 259289 TAS2R43 - T2R43|T2R52 HGNC:18875|MIM:612668|Ensembl:ENSG00000255374|HPRD:18152|Vega:OTTHUMG00000165352 12 12p13.2 taste receptor, type 2, member 43 protein-coding TAS2R43 taste receptor, type 2, member 43 O taste receptor type 2 member 43|taste receptor type 2 member 52 20121230 -9606 259290 TAS2R31 - T2R31|T2R44|T2R53|TAS2R44 HGNC:19113|MIM:612669|Ensembl:ENSG00000256436|HPRD:18153|Vega:OTTHUMG00000168558 12 12p13.2 taste receptor, type 2, member 31 protein-coding TAS2R31 taste receptor, type 2, member 31 O taste receptor type 2 member 31|taste receptor type 2 member 44|taste receptor type 2 member 53|taste receptor, type 2, member 44 20121230 -9606 259291 TAS2R45 - GPR59|T2R45|ZG24P HGNC:18876|MIM:613967|HPRD:18154 12 - taste receptor, type 2, member 45 protein-coding TAS2R45 taste receptor, type 2, member 45 O G protein-coupled receptor 59|G-protein coupled receptor 59|taste receptor type 2 member 45 20121230 -9606 259292 TAS2R46 - T2R46|T2R54 HGNC:18877|MIM:612774|Ensembl:ENSG00000226761|HPRD:18155|Vega:OTTHUMG00000165351 12 12p13.2 taste receptor, type 2, member 46 protein-coding TAS2R46 taste receptor, type 2, member 46 O taste receptor type 2 member 46|taste receptor type 2 member 54 20121230 -9606 259293 TAS2R30 - T2R30|T2R47|TAS2R47 HGNC:19112|MIM:613963|Ensembl:ENSG00000256188|Vega:OTTHUMG00000168562 12 12p13.2 taste receptor, type 2, member 30 protein-coding TAS2R30 taste receptor, type 2, member 30 O taste receptor T2R47|taste receptor type 2 member 30|taste receptor type 2 member 47|taste receptor, type 2, member 47|type 2 taste receptor member 30|type 2 taste receptor member 47 20121230 -9606 259294 TAS2R19 - MSTP058|T2R19|T2R23|T2R48|TAS2R23|TAS2R48 HGNC:19108|MIM:613961|Ensembl:ENSG00000212124|HPRD:18156|Vega:OTTHUMG00000162687 12 12p13.2 taste receptor, type 2, member 19 protein-coding TAS2R19 taste receptor, type 2, member 19 O taste receptor type 2 member 19|taste receptor type 2 member 23|taste receptor type 2 member 48|taste receptor, type 2, member 23|taste receptor, type 2, member 48 20121230 -9606 259295 TAS2R20 - T2R20|T2R49|T2R56|TAS2R49 HGNC:19109|MIM:613962|Ensembl:ENSG00000255837|HPRD:18157|Vega:OTTHUMG00000162695 12 12p13.2 taste receptor, type 2, member 20 protein-coding TAS2R20 taste receptor, type 2, member 20 O taste receptor type 2 member 20|taste receptor type 2 member 49|taste receptor type 2 member 56|taste receptor, type 2, member 49 20121230 -9606 259296 TAS2R50 - T2R50|T2R51|TAS2R51 HGNC:18882|MIM:609627|Ensembl:ENSG00000212126|HPRD:18158|Vega:OTTHUMG00000162719 12 12p13.2 taste receptor, type 2, member 50 protein-coding TAS2R50 taste receptor, type 2, member 50 O taste receptor type 2 member 50|taste receptor type 2 member 51 20121230 -9606 259307 IL4I1 UNQ636/PRO1265 FIG1|LAAO|LAO HGNC:19094|MIM:609742|Ensembl:ENSG00000104951|HPRD:17146 19 19q13.3-q13.4 interleukin 4 induced 1 protein-coding IL4I1 interleukin 4 induced 1 O Fig-1 protein|IL4-induced protein 1|L-amino-acid oxidase|interleukin four induced 1 20121230 -9606 259308 FAM205A - C9orf144B HGNC:41911|Ensembl:ENSG00000205108|Vega:OTTHUMG00000000448 9 9p12 family with sequence similarity 205, member A protein-coding FAM205A family with sequence similarity 205, member A O protein FAM205A|transmembrane protein C9orf144B 20121230 -9606 260293 CYP4X1 RP11-184J23.1 CYPIVX1 HGNC:20244|MIM:614999|Ensembl:ENSG00000186377|HPRD:13110|Vega:OTTHUMG00000008017 1 1p33|1 cytochrome P450, family 4, subfamily X, polypeptide 1 protein-coding CYP4X1 cytochrome P450, family 4, subfamily X, polypeptide 1 O cytochrome P450 4X1 20121230 -9606 260294 NSUN5P2 - NOL1R2|NSUN5C|WBSCR20B|WBSCR20C HGNC:16609|HPRD:15657 7 7q11.23 NOP2/Sun domain family, member 5 pseudogene 2 pseudo NSUN5P2 NOP2/Sun domain family, member 5 pseudogene 2 O - 20121230 -9606 260328 ALRH - - MIM:607154 - - Allergic rhinitis unknown - - - - 20110215 -9606 260330 ALPPP - - HGNC:14016 2 2q37.1 alkaline phosphatase, pseudogene pseudo ALPPP alkaline phosphatase, pseudogene O - 20090331 -9606 260331 ECEL1P1 - - HGNC:14017 2 2q37.1 endothelin converting enzyme-like 1, pseudogene 1 pseudo ECEL1P1 endothelin converting enzyme-like 1, pseudogene 1 O - 20090331 -9606 260332 ECEL1P3 - - HGNC:14018 2 2q37.1 endothelin converting enzyme-like 1, pseudogene 3 pseudo ECEL1P3 endothelin converting enzyme-like 1, pseudogene 3 O - 20121230 -9606 260334 LOC260334 - - - 18 18p11 HSA18p11 beta-tubulin 4Q pseudogene pseudo - - - - 20121230 -9606 260335 ELF2P2 - - HGNC:24610 6 6p25.3 E74-like factor 2 pseudogene 2 pseudo ELF2P2 E74-like factor 2 pseudogene 2 O - 20121230 -9606 260336 ELF2P3 - - HGNC:24611 9 9q21 E74-like factor 2 pseudogene 3 pseudo ELF2P3 E74-like factor 2 pseudogene 3 O - 20121230 -9606 260337 UHRF2P1 - - HGNC:39565 X Xq13.2 ubiquitin-like with PHD and ring finger domains 2 pseudogene 1 pseudo UHRF2P1 ubiquitin-like with PHD and ring finger domains 2 pseudogene 1 O - 20121230 -9606 260338 LOC260338 - - - 12 12p11.1 tubulin, beta 2B class IIb pseudogene pseudo - - - - 20121230 -9606 260339 LOC260339 - - - 6 6q22.31 transcription factor A, mitochondrial pseudogene pseudo - - - - 20121230 -9606 260340 TFAMP2 - MTTF1|TCF6L3 HGNC:11638 11 11q22.3 transcription factor A, mitochondrial pseudogene 2 pseudo TFAMP2 transcription factor A, mitochondrial pseudogene 2 O - 20121230 -9606 260341 TFAMP1 - MTTF1|TCF6L1 HGNC:11636 7 7p22.3 transcription factor A, mitochondrial pseudogene 1 pseudo TFAMP1 transcription factor A, mitochondrial pseudogene 1 O - 20121230 -9606 260342 BA345E19.2 - - - X Xq21.2 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) pseudogene pseudo - - - - 20121230 -9606 260402 AIS - AIS1|IS1 MIM:181800 19 19p13.3 Adolescent idiopathic scoliosis unknown - - - - 20120622 -9606 260403 MMEDF - - MIM:607131 15 15q26.1 Macrocephaly with multiple epiphyseal dysplasia and distinctive facies unknown - - - - 20120622 -9606 260404 LOC260404 - - - 17 17p11.2 DKFZp434F1819 related gene protein-coding - - - - 20100404 -9606 260415 SCASI - SCA24|SCAR4 HGNC:19186|MIM:607317 1 1p36 spinocerebellar ataxia with saccadic intrusions unknown SCASI spinocerebellar ataxia with saccadic intrusions O - 20120622 -9606 260421 LOC260421 - - - 5 5q13 actin related protein 2/3 complex subunit 1A pseudogene pseudo - - - - 20121230 -9606 260422 LOC260422 - - - 4 4q21.3 actin related protein 2/3 complex subunit 1A pseudogene pseudo - - - - 20121230 -9606 260425 MAGI3 - MAGI-3|RP4-730K3.1|dJ730K3.2 HGNC:29647|Ensembl:ENSG00000081026|HPRD:11290|Vega:OTTHUMG00000011737 1 1p12-p11.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 O membrane-associated guanylate kinase inverted 3|membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3|membrane-associated guanylate kinase-related 3 20121230 -9606 260429 PRSS33 - EOS HGNC:30405|MIM:613797|Ensembl:ENSG00000103355|HPRD:07109|Vega:OTTHUMG00000177360 16 16p13.3 protease, serine, 33 protein-coding PRSS33 protease, serine, 33 O serine protease 33|serine protease EOS 20121230 -9606 260431 COPD - - MIM:606963 2 2q Pulmonary disease, chronic obstructive, severe early-onset unknown - - - - 20120622 -9606 260432 SLSN3 - - MIM:606995 3 3q22 Senior-Loken syndrome 3 unknown - - - - 20120622 -9606 260434 PYDC1 - ASC2|POP1|PYC1 HGNC:30261|Ensembl:ENSG00000169900|HPRD:17938|Vega:OTTHUMG00000132407 16 16p11.2 PYD (pyrin domain) containing 1 protein-coding PYDC1 PYD (pyrin domain) containing 1 O PAAD-only protein 1|pyrin domain containing 1|pyrin domain-containing protein 1|pyrin-domain containing protein 1|pyrin-only protein 1 20121230 -9606 260436 FDCSP UNQ733/PRO1419 C4orf7|FDC-SP HGNC:19215|MIM:607241|Ensembl:ENSG00000181617|HPRD:06255|Vega:OTTHUMG00000129393 4 4q13|4q13 follicular dendritic cell secreted protein protein-coding FDCSP follicular dendritic cell secreted protein O FDC secreted protein|follicular dendritic cell secreted peptide 20121230 -9606 261726 TIPRL RP1-69E11.1 TIP|TIP41|dJ69E11.3 HGNC:30231|MIM:611807|Ensembl:ENSG00000143155|HPRD:14608|Vega:OTTHUMG00000034646 1 1q23.2 TIP41, TOR signaling pathway regulator-like (S. cerevisiae) protein-coding TIPRL TIP41, TOR signaling pathway regulator-like (S. cerevisiae) O TIP41-like protein|putative MAPK activating protein|putative MAPK-activating protein PM10|type 2A-interacting protein 20121230 -9606 261727 CRCL - - MIM:607135 3 3p Creatinine clearance QTL unknown - - - - 20120622 -9606 261729 STEAP2 UNQ6507/PRO23203 IPCA1|PCANAP1|PUMPCn|STAMP1|STMP HGNC:17885|MIM:605094|Ensembl:ENSG00000157214|HPRD:05481|Vega:OTTHUMG00000023341 7 7q21.13 STEAP family member 2, metalloreductase protein-coding STEAP2 STEAP family member 2, metalloreductase O SixTransMembrane Protein of Prostate 1|metalloreductase STEAP2|prostate cancer associated protein 1|prostate cancer-associated protein 1|protein up-regulated in metastatic prostate cancer|protein upregulated in metastatic prostate cancer|six transmembrane epithelial antigen of prostate 2|six transmembrane epithelial antigen of the prostate 2|six-transmembrane epithelial antigen of prostate 2 20121230 -9606 261734 NPHP4 RP11-33M12.1 POC10|SLSN4 HGNC:19104|MIM:607215|Ensembl:ENSG00000131697|HPRD:06238|Vega:OTTHUMG00000000701 1 1p36 nephronophthisis 4 protein-coding NPHP4 nephronophthisis 4 O POC10 centriolar protein homolog|nephrocystin-4|nephroretinin 20121230 -9606 261735 TVP23CP2 - CGI-148P HGNC:44647 16 16p13 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) pseudogene 2 pseudo TVP23CP2 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) pseudogene 2 O - 20121230 -9606 266553 OFCC1 - MRDS1 HGNC:21017|MIM:614287|HPRD:17659 6 6p24.3 orofacial cleft 1 candidate 1 protein-coding OFCC1 orofacial cleft 1 candidate 1 O orofacial cleft 1 candidate gene 1 protein|orofacial clefting chromosomal breakpoint region candidate 1 protein 20121230 -9606 266619 LOC266619 - - - 17 17p11.2 nitric oxide synthase 2, inducible pseudogene pseudo - - - - 20121230 -9606 266621 DGCR7 - - HGNC:19249 22 22q11 DiGeorge syndrome critical region gene 7 unknown DGCR7 DiGeorge syndrome critical region gene 7 O - 20120508 -9606 266623 SLC25A5P1 CTA-250D10.22-001 ANTP3|bK250D10.4 HGNC:19250 22 22q13.2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 1 pseudo SLC25A5P1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 1 O - 20121230 -9606 266625 NDUFA9P1 - dJ106I20.2 HGNC:19252 22 22q12.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, pseudogene 1 pseudo NDUFA9P1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, pseudogene 1 O - 20121230 -9606 266626 CLCP1 - - HGNC:19257 22 22q11.2 Charcot-Leyden crystal protein pseudogene 1 pseudo CLCP1 Charcot-Leyden crystal protein pseudogene 1 O - 20121230 -9606 266629 SEC14L3 - TAP2 HGNC:18655|MIM:612824|Ensembl:ENSG00000100012|HPRD:15311|Vega:OTTHUMG00000151259 22 22q12.2 SEC14-like 3 (S. cerevisiae) protein-coding SEC14L3 SEC14-like 3 (S. cerevisiae) O SEC14-like protein 3|SEC14p-like protein TAP2|tocopherol-associated protein 2 20121230 -9606 266643 EDDM3CP - FAM12CP|HE3-GAMMA HGNC:19224 2 2q21 epididymal protein 3C, pseudogene pseudo EDDM3CP epididymal protein 3C, pseudogene O - 20121230 -9606 266655 LINC00094 - LP2477|NCRNA00094|bA374P20.3 HGNC:24742 9 9q34 long intergenic non-protein coding RNA 94 miscRNA LINC00094 long intergenic non-protein coding RNA 94 O - 20121230 -9606 266656 TAS2R12P - PS10|T2R12|TAS2R12|TAS2R26 HGNC:19103 12 12p13.2 taste receptor, type 2, member 12 pseudogene pseudo TAS2R12P taste receptor, type 2, member 12 pseudogene O - 20121230 -9606 266657 TAS2R15 - PS8|T2R15 HGNC:19106 12 12p13.2 taste receptor, type 2, member 15 pseudogene pseudo TAS2R15 taste receptor, type 2, member 15 pseudogene O - 20121230 -9606 266661 TAS2R22 - T2R22 HGNC:19110 12 - taste receptor, type 2, member 22 unknown TAS2R22 taste receptor, type 2, member 22 O - 20100310 -9606 266665 TAS2R33 - T2R33 HGNC:19114 12 - taste receptor, type 2, member 33 protein-coding TAS2R33 taste receptor, type 2, member 33 O - 20080828 -9606 266666 TAS2R36 - T2R36 HGNC:19115 12 - taste receptor, type 2, member 36 protein-coding TAS2R36 taste receptor, type 2, member 36 O - 20080828 -9606 266667 TAS2R37 - T2R37 HGNC:19116 12 - taste receptor, type 2, member 37 protein-coding TAS2R37 taste receptor, type 2, member 37 O - 20080828 -9606 266671 MAGI2-IT1 - MAGI2-IT|MAGI2IT|MAGI2IT1|PR47 HGNC:30058|MIM:608950 7 7q21.11 MAGI2 intronic transcript 1 (non-protein coding) unknown MAGI2-IT1 MAGI2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 266673 ZNF402P - - HGNC:19292 22 22q11.1 zinc finger protein 402, pseudogene pseudo ZNF402P zinc finger protein 402, pseudogene O - 20121230 -9606 266675 BEST4 RP11-269F19.5 VMD2L2 HGNC:17106|MIM:607336|Ensembl:ENSG00000142959|HPRD:09549|Vega:OTTHUMG00000008488 1 1p33-p32.3 bestrophin 4 protein-coding BEST4 bestrophin 4 O bestrophin-4|vitelliform macular dystrophy 2-like 2|vitelliform macular dystrophy 2-like protein 2 20121230 -9606 266678 MRX81 - - HGNC:19301|MIM:300433 X Xp11.2-q12 mental retardation, X-linked 81 unknown MRX81 mental retardation, X-linked 81 O - 20120622 -9606 266683 LOC266683 - - - X Xq13.3 dendritic cell protein pseudogene pseudo - - - - 20121230 -9606 266691 DYX6 - DYXQTL18 HGNC:19352|MIM:606616 18 18p11.2 dyslexia susceptibility 6 unknown DYX6 dyslexia susceptibility 6 O - 20120622 -9606 266693 EZH2P1 - - HGNC:39918 21 21q22.2 enhancer of zeste homolog 2 (Drosophila) pseudogene 1 pseudo EZH2P1 enhancer of zeste homolog 2 (Drosophila) pseudogene 1 O - 20121230 -9606 266694 LOC266694 - - - X Xq27.1 embryonic ectoderm development pseudogene pseudo - - - - 20121230 -9606 266695 PHF2P1 - DKFZp686A1627 HGNC:30241 13 13q11 PHD finger protein 2 pseudogene 1 pseudo PHF2P1 PHD finger protein 2 pseudogene 1 O - 20121017 -9606 266697 POM121L4P - - HGNC:19326 22 22q11.2 POM121 transmembrane nucleoporin-like 4 pseudogene pseudo POM121L4P POM121 transmembrane nucleoporin-like 4 pseudogene O - 20121230 -9606 266698 ARHGAP42P3 - OPHN1P1 HGNC:19327 22 22q11.1 Rho GTPase activating protein 42 pseudogene 3 pseudo ARHGAP42P3 Rho GTPase activating protein 42 pseudogene 3 O - 20121230 -9606 266699 FABP5P11 - FABP5L11|FABP5P1 HGNC:19328 22 22q11 fatty acid binding protein 5 pseudogene 11 pseudo FABP5P11 fatty acid binding protein 5 pseudogene 11 O - 20121230 -9606 266700 BMP6P1 - TGF-beta1P|TGFB1P HGNC:19329 22 22q11.2 bone morphogenetic protein 6 pseudogene 1 pseudo BMP6P1 bone morphogenetic protein 6 pseudogene 1 O - 20121230 -9606 266701 SOCS2P2 - - HGNC:19330 22 22q11.2 suppressor of cytokine signaling 2 pseudogene 2 pseudo SOCS2P2 suppressor of cytokine signaling 2 pseudogene 2 O - 20121230 -9606 266703 ASH2LP1 - - HGNC:19332 22 22q11.22 ash2 (absent, small, or homeotic)-like (Drosophila) pseudogene 1 pseudo ASH2LP1 ash2 (absent, small, or homeotic)-like (Drosophila) pseudogene 1 O - 20121230 -9606 266710 COMA - - MIM:257550 2 2q13 Cogan-type congential oculomotor apraxia unknown - - - - 20120622 -9606 266719 RRDX - - MIM:300378 X Xq24-q25 Radial ray deficiency unknown - - - - 20120622 -9606 266722 HS6ST3 RP11-235O20.1 HS6ST-3 HGNC:19134|MIM:609401|Ensembl:ENSG00000185352|HPRD:11030|Vega:OTTHUMG00000017232 13 13q32.1 heparan sulfate 6-O-sulfotransferase 3 protein-coding HS6ST3 heparan sulfate 6-O-sulfotransferase 3 O heparan-sulfate 6-O-sulfotransferase 3 20121230 -9606 266723 PSMC6P1 - PSMC6P HGNC:20634 8 8q12.1 proteasome 26S subunit, ATPase, 6 pseudogene 1 pseudo PSMC6P1 proteasome 26S subunit, ATPase, 6 pseudogene 1 O - 20121230 -9606 266724 HSPA9P1 - HSPA9BP|HSPA9P HGNC:24915 2 2q36.3 heat shock 70kDa protein 9 pseudogene 1 pseudo HSPA9P1 heat shock 70kDa protein 9 pseudogene 1 O - 20121230 -9606 266726 DYX7 - - HGNC:19324 11 11p15.5 dyslexia susceptibility 7 unknown DYX7 dyslexia susceptibility 7 O - 20110215 -9606 266727 MDGA1 RP3-402N21.1 GPIM|MAMDC3 HGNC:19267|MIM:609626|Ensembl:ENSG00000112139|HPRD:14374|Vega:OTTHUMG00000014626 6 6p21 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 O GPI and MAM protein|MAM domain-containing glycosylphosphatidylinositol anchor protein 1|MAM domain-containing protein 3|glycosyl-phosphatidyl-inositol-MAM|glycosylphosphatidylinositol-MAM 20121230 -9606 266740 MAGEA2B - MAGE2|MAGEA2 HGNC:19340|MIM:300549|HPRD:14347 X Xq28 melanoma antigen family A, 2B protein-coding MAGEA2B melanoma antigen family A, 2B O CT1.2|MAGE-2 antigen|cancer/testis antigen 1.2|melanoma antigen 2|melanoma antigen, family A, 2, copy b|melanoma-associated antigen 2 20121230 -9606 266743 NPAS4 - Le-PAS|NXF|PASD10|bHLHe79 HGNC:18983|MIM:608554|Ensembl:ENSG00000174576|HPRD:12260|Vega:OTTHUMG00000167045 11 11q13 neuronal PAS domain protein 4 protein-coding NPAS4 neuronal PAS domain protein 4 O HLH-PAS transcription factor NXF|PAS domain-containing protein 10|class E basic helix-loop-helix protein 79|neuronal PAS domain-containing protein 4|neuronal PAS4 20121230 -9606 266747 RGL4 - Rgr HGNC:31911|MIM:612214|Ensembl:ENSG00000159496|HPRD:11528|Vega:OTTHUMG00000150711 22 22q11.23 ral guanine nucleotide dissociation stimulator-like 4 protein-coding RGL4 ral guanine nucleotide dissociation stimulator-like 4 O Ral-GDS related protein Rgr|RalGDS related oncogene|hRGR|ral-GDS-related protein|ralGDS-like 4 20121230 -9606 266783 PSMD2P1 - - HGNC:30154 1 1q43 proteasome 26S subunit, non-ATPase, 2 pseudogene 1 pseudo PSMD2P1 proteasome 26S subunit, non-ATPase, 2 pseudogene 1 O - 20121230 -9606 266785 NUP50P2 - - HGNC:29928 6 6p22 nucleoporin 50 pseudogene 2 pseudo NUP50P2 nucleoporin 50 pseudogene 2 O - 20121230 -9606 266786 NUP50P3 - - HGNC:29927 5 5p14 nucleoporin 50 pseudogene 3 pseudo NUP50P3 nucleoporin 50 pseudogene 3 O - 20121230 -9606 266789 EPPS - - MIM:607221 4 4p15 Epilepsy, partial, with pericentral spikes unknown - - - - 20120622 -9606 266790 HCA1 - AH|HCA MIM:607258 4 4q33-qter Hypercalciuria, absorptive, 1 unknown - - - - 20120622 -9606 266811 NPSA - - - - - novel prostate-specific antigen protein-coding - - - - 20121007 -9606 266812 NAP1L5 - DRLM HGNC:19968|MIM:612203|Ensembl:ENSG00000177432|HPRD:17626|Vega:OTTHUMG00000130950 4 4q22.1|4q21-q22 nucleosome assembly protein 1-like 5 protein-coding NAP1L5 nucleosome assembly protein 1-like 5 O down-regulated in liver malignancy 20121230 -9606 266917 D21S2088E - - - 21 - D21S2088E miscRNA - - - - 20121230 -9606 266918 D21S2090E - - - - - uncharacterized D21S2090E protein-coding - - - - 20120508 -9606 266919 LINC00307 - D21S2091E|NCRNA00307 HGNC:16727 21 21q22.11 long intergenic non-protein coding RNA 307 miscRNA LINC00307 long intergenic non-protein coding RNA 307 O - 20121230 -9606 266920 AK2P1 - AK2B HGNC:24037 1 1p32.1 adenylate kinase 2 pseudogene 1 pseudo AK2P1 adenylate kinase 2 pseudogene 1 O - 20121230 -9606 266954 CABYRP1 - CABYRP HGNC:31902 3 3p21.1 calcium binding tyrosine-(Y)-phosphorylation regulated pseudogene 1 pseudo CABYRP1 calcium binding tyrosine-(Y)-phosphorylation regulated pseudogene 1 O - 20121230 -9606 266971 PIPSL RP11-429H9.6 PIP5K1L1|PIP5K1P3|PSMD4P2|bA429H9.1 HGNC:23733 10 10q23.33 PIP5K1A and PSMD4-like, pseudogene pseudo PIPSL PIP5K1A and PSMD4-like, pseudogene O - 20121230 -9606 266977 GPR110 RP11-39C2.1 KPG_012|PGR19|hGPCR36 HGNC:18990|Ensembl:ENSG00000153292|HPRD:08661|Vega:OTTHUMG00000014795 6 6p12.3 G protein-coupled receptor 110 protein-coding GPR110 G protein-coupled receptor 110 O G protein-coupled receptor PGR19|G-protein coupled receptor 110|G-protein coupled receptor KPG_012|G-protein coupled receptor PGR19|probable G-protein coupled receptor 110|seven transmembrane helix receptor 20121230 -9606 266979 CCNP - - MIM:607304 2 2p12 Cataract, congenital, nuclear progressive unknown - - - - 20120622 -9606 267002 PGBD2 - - HGNC:19399|Ensembl:ENSG00000185220|HPRD:17837|Vega:OTTHUMG00000040424 1 1q44 piggyBac transposable element derived 2 protein-coding PGBD2 piggyBac transposable element derived 2 O piggyBac transposable element-derived protein 2 20121230 -9606 267004 PGBD3 RP11-123B3.3 - HGNC:19400|Ensembl:ENSG00000243251|HPRD:17838|Vega:OTTHUMG00000018193 10 10q11 piggyBac transposable element derived 3 protein-coding PGBD3 piggyBac transposable element derived 3 O piggyBac transposable element-derived protein 3 20121230 -9606 267005 PGBD3P1 - - HGNC:19402 12 12q13.12 piggyBac transposable element derived 3 pseudogene 1 pseudo PGBD3P1 piggyBac transposable element derived 3 pseudogene 1 O - 20121230 -9606 267006 PGBD3P2 - - HGNC:19397 5 5p13.3 piggyBac transposable element derived 3 pseudogene 2 pseudo PGBD3P2 piggyBac transposable element derived 3 pseudogene 2 O - 20121230 -9606 267007 PGBD3P3 - - HGNC:19396 12 12q24.2 piggyBac transposable element derived 3 pseudogene 3 pseudo PGBD3P3 piggyBac transposable element derived 3 pseudogene 3 O - 20121230 -9606 267008 PGBD3P4 - - HGNC:19379 4 4p14 piggyBac transposable element derived 3 pseudogene 4 pseudo PGBD3P4 piggyBac transposable element derived 3 pseudogene 4 O - 20121230 -9606 267009 RPS9P2 - RPS9_3_1753|bA12M9.1 HGNC:19428 22 22q13.2 ribosomal protein S9 pseudogene 2 pseudo RPS9P2 ribosomal protein S9 pseudogene 2 O - 20121230 -9606 267010 RNU12 - RNU12-1|RNU12L|RNU12P|dJ222E13.7 HGNC:19380 22 22q13.2 RNA, U12 small nuclear snRNA RNU12 RNA, U12 small nuclear O - 20121230 -9606 267012 DAOA RP11-166E2.2 G72|LG72|SG72 HGNC:21191|MIM:607408|Ensembl:ENSG00000182346|HPRD:07591|Vega:OTTHUMG00000041333 13 13q33.2|13q34 D-amino acid oxidase activator protein-coding DAOA D-amino acid oxidase activator O G72 transcript|schizophrenia- and bipolar disorder-associated protein G72 20121230 -9606 267013 HLA-DPA3 - dJ1033B10.14 HGNC:19393 6 6p21.3 major histocompatibility complex, class II, DP alpha 3 (pseudogene) pseudo HLA-DPA3 major histocompatibility complex, class II, DP alpha 3 (pseudogene) O - 20121230 -9606 267014 HLA-N - HLA-30 HGNC:19406 6 6p21.3 major histocompatibility complex, class I, N (pseudogene) pseudo HLA-N major histocompatibility complex, class I, N (pseudogene) O - 20121230 -9606 267015 HLA-S - HLA-17 HGNC:19395 6 6p21.3 major histocompatibility complex, class I, S (pseudogene) pseudo HLA-S major histocompatibility complex, class I, S (pseudogene) O - 20121230 -9606 267016 HLA-X - - HGNC:19385 6 6p21.3 major histocompatibility complex, class I, X (pseudogene) pseudo HLA-X major histocompatibility complex, class I, X (pseudogene) O - 20121230 -9606 267017 HLA-Z - HLA-Z1 HGNC:19394 6 6p21.3 major histocompatibility complex, class I, Z (pseudogene) pseudo HLA-Z major histocompatibility complex, class I, Z (pseudogene) O - 20121230 -9606 267020 ATP5L2 - ATP5K2 HGNC:13213|Ensembl:ENSG00000249222|Vega:OTTHUMG00000150890 22 22q13.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2 protein-coding ATP5L2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2 O ATP synthase subunit g 2, mitochondrial|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G2 pseudogene|ATP synthase, H+ transporting, mitochondrial F1F0, subunit g|ATPase subunit g 2 20121230 -9606 268276 LOC268276 - - - 11 11q13 musashi 1 pseudogene pseudo - - - - 20121230 -9606 276719 SOCS2P1 - - HGNC:16069 20 20q11.21 suppressor of cytokine signaling 2 pseudogene 1 pseudo SOCS2P1 suppressor of cytokine signaling 2 pseudogene 1 O - 20121230 -9606 280636 C11orf31 - C17orf10|SELH HGNC:18251|MIM:607914|Ensembl:ENSG00000211450|HPRD:07447|Vega:OTTHUMG00000167202 11 11q12.1 chromosome 11 open reading frame 31 protein-coding C11orf31 chromosome 11 open reading frame 31 O selenoprotein H 20121230 -9606 280637 PSMD7P1 - MOV34L|PSMD7L HGNC:7202 17 17q24.1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 pseudogene 1 pseudo PSMD7P1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 pseudogene 1 O - 20121230 -9606 280644 PSMD10P2 - - HGNC:30151 3 3q27.3 proteasome 26S subunit, non-ATPase, 10 pseudogene 2 pseudo PSMD10P2 proteasome 26S subunit, non-ATPase, 10 pseudogene 2 O - 20121230 -9606 280655 IGBP1P1 - C14orf19 HGNC:19709 14 14q13.2 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo IGBP1P1 immunoglobulin (CD79A) binding protein 1 pseudogene 1 O - 20121230 -9606 280657 SSX6 RP11-38O23.6 SSXP2|dJ54B20.1|psiSSX2 HGNC:19652|MIM:300541|HPRD:18109 X Xp11.2 synovial sarcoma, X breakpoint 6 (pseudogene) pseudo SSX6 synovial sarcoma, X breakpoint 6 (pseudogene) O - 20121230 -9606 280658 SSX7 RP11-552J9.7 - HGNC:19653|MIM:300542|Ensembl:ENSG00000187754|HPRD:06727|Vega:OTTHUMG00000021572 X Xp11.23 synovial sarcoma, X breakpoint 7 protein-coding SSX7 synovial sarcoma, X breakpoint 7 O protein SSX7 20121230 -9606 280659 SSX8 RP11-552J9.8 - HGNC:19654|MIM:300543|HPRD:06728 X Xp11.23 synovial sarcoma, X breakpoint 8 pseudo SSX8 synovial sarcoma, X breakpoint 8 O - 20121230 -9606 280660 SSX9 RP11-344N17.10-001 - HGNC:19655|MIM:300544|HPRD:06729 X Xp11.23 synovial sarcoma, X breakpoint 9 pseudo SSX9 synovial sarcoma, X breakpoint 9 O - 20121230 -9606 280661 EIF1AXP1 - EIF1AP1 HGNC:19900 1 1p36.13 eukaryotic translation initiation factor 1A, X-linked pseudogene 1 pseudo EIF1AXP1 eukaryotic translation initiation factor 1A, X-linked pseudogene 1 O - 20121230 -9606 280664 WFDC10B RP4-688G8.4 WAP12 HGNC:20479|Ensembl:ENSG00000182931|HPRD:15672|Vega:OTTHUMG00000130227 20 20q13.12 WAP four-disulfide core domain 10B protein-coding WFDC10B WAP four-disulfide core domain 10B O protease inhibitor WAP12|protein WFDC10B 20121230 -9606 280665 LOC280665 - - - 4 - anti-CNG alpha 1 cation channel translation product-like miscRNA - - - - 20110512 -9606 282549 STQTL3 - - MIM:606257 12 12p11.2-q14 stature quantitative trait locus 3 unknown - - - - 20120622 -9606 282550 STQTL4 - - MIM:606258 13 13q32-q33 stature quantitative trait locus 4 unknown - - - - 20120622 -9606 282551 ITS - - MIM:606960 22 22q12.1-q12.2 Insulinoma tumor suppressor gene locus other - - - - 20120622 -9606 282552 IS2 - AIS2 MIM:607354 17 17p11.2 Scoliosis, idiopathic 2 unknown - - - - 20120622 -9606 282553 AUTS8 - AUTS2 MIM:607373 3 3q25-q27 Autism, susceptibility to, 8 unknown - - - - 20120622 -9606 282566 LINC00515 - C21orf71|PRED21 HGNC:16019 21 21q21.3 long intergenic non-protein coding RNA 515 miscRNA LINC00515 long intergenic non-protein coding RNA 515 O - 20121230 -9606 282569 BACE2-IT1 - C21orf75|NCRNA00228|PRED43 HGNC:16024 21 21q22.2 BACE2 intronic transcript 1 (non-protein coding) miscRNA BACE2-IT1 BACE2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 282616 IFNL2 - IL-28A|IL28A HGNC:18364|MIM:607401|Ensembl:ENSG00000183709|HPRD:09586 19 19q13.13 interferon, lambda 2 protein-coding IFNL2 interferon, lambda 2 O IFN-lambda-2|cytokine Zcyto20|interferon lambda 2|interferon lambda-2|interferon-lambda 2|interleukin 28A (interferon, lambda 2)|interleukin-28A 20121230 -9606 282617 IFNL3 - IL-28B|IL28B|IL28C HGNC:18365|MIM:607402|Ensembl:ENSG00000197110|HPRD:09587 19 19q13.13 interferon, lambda 3 protein-coding IFNL3 interferon, lambda 3 O IFN-lambda-3|IFN-lambda-4|IL-28C|cytokine Zcyto22|interferon lambda-3|interferon lambda-4|interferon, lambda 4|interleukin 28B (interferon, lambda 3)|interleukin 28C|interleukin-28B|interleukin-28C 20121230 -9606 282618 IFNL1 - IL-29|IL29 HGNC:18363|MIM:607403|Ensembl:ENSG00000182393|HPRD:09588 19 19q13.13 interferon, lambda 1 protein-coding IFNL1 interferon, lambda 1 O IFN-lambda-1|cytokine Zcyto21|interferon lambda-1|interferon-lambda-1|interleukin 29 (interferon, lambda 1)|interleukin-29 20121230 -9606 282631 GCCD2 - GCCD3 MIM:607398 - - Glucocorticoid deficiency 2 unknown - - - - 20110714 -9606 282679 AQP11 PSEC0027 AQPX1 HGNC:19940|MIM:609914|Ensembl:ENSG00000178301|HPRD:16503|Vega:OTTHUMG00000165194 11 11q14.1 aquaporin 11 protein-coding AQP11 aquaporin 11 O AQP-11|aquaporin-11 20121230 -9606 282694 NASPP1 - - HGNC:29910 8 8q12 nuclear autoantigenic sperm protein pseudogene 1 pseudo NASPP1 nuclear autoantigenic sperm protein pseudogene 1 O - 20121230 -9606 282697 DIS3L2P1 - DIS3L2P|FAM6B HGNC:14021 2 2q37.1 DIS3 mitotic control homolog (S. cerevisiae)-like 2 pseudogene 1 pseudo DIS3L2P1 DIS3 mitotic control homolog (S. cerevisiae)-like 2 pseudogene 1 O - 20121230 -9606 282706 DAOA-AS1 - DAOA-AS|DAOAAS|G30 HGNC:30243|MIM:607415|HPRD:07597 13 13q33.2|13q34 DAOA antisense RNA 1 miscRNA DAOA-AS1 DAOA antisense RNA 1 O - 20121230 -9606 282754 OR4D12P - OR7E103P HGNC:19587 4 4p16.3 olfactory receptor, family 4, subfamily D, member 12 pseudogene pseudo OR4D12P olfactory receptor, family 4, subfamily D, member 12 pseudogene O - 20121230 -9606 282756 OR7E149P - - HGNC:19589 12 12p13.31 olfactory receptor, family 7, subfamily E, member 149 pseudogene pseudo OR7E149P olfactory receptor, family 7, subfamily E, member 149 pseudogene O - 20121230 -9606 282763 OR51B5 - HOR5'Beta5|OR11-37 HGNC:19599|HPRD:14993 11 11p15.4 olfactory receptor, family 51, subfamily B, member 5 protein-coding OR51B5 olfactory receptor, family 51, subfamily B, member 5 O odorant receptor HOR5'beta5|olfactory receptor 51B5|olfactory receptor OR11-37 20121230 -9606 282769 OR10AF1P - - HGNC:19606 11 11q12 olfactory receptor, family 10, subfamily AF, member 1 pseudogene pseudo OR10AF1P olfactory receptor, family 10, subfamily AF, member 1 pseudogene O - 20121230 -9606 282770 OR10AG1 - OR11-160 HGNC:19607|Ensembl:ENSG00000174970|HPRD:14885|Vega:OTTHUMG00000166824 11 11q11 olfactory receptor, family 10, subfamily AG, member 1 protein-coding OR10AG1 olfactory receptor, family 10, subfamily AG, member 1 O olfactory receptor 10AG1|olfactory receptor OR11-160 20121230 -9606 282775 OR5J2 - OR11-266 HGNC:19612|Ensembl:ENSG00000174957|HPRD:17762|Vega:OTTHUMG00000166835 11 11q11 olfactory receptor, family 5, subfamily J, member 2 protein-coding OR5J2 olfactory receptor, family 5, subfamily J, member 2 O olfactory receptor 5J2|olfactory receptor OR11-266 20121230 -9606 282776 OR8V1P - OR11-267 HGNC:19613 11 11q olfactory receptor, family 8, subfamily V, member 1 pseudogene pseudo OR8V1P olfactory receptor, family 8, subfamily V, member 1 pseudogene O - 20121230 -9606 282786 OR8G7P - - HGNC:19625 11 11q24.2 olfactory receptor, family 8, subfamily G, member 7 pseudogene pseudo OR8G7P olfactory receptor, family 8, subfamily G, member 7 pseudogene O - 20121230 -9606 282790 OR5BT1P - - HGNC:19629 12 12q13.2 olfactory receptor, family 5, subfamily BT, member 1 pseudogene pseudo OR5BT1P olfactory receptor, family 5, subfamily BT, member 1 pseudogene O - 20121230 -9606 282791 OR8T1P - - HGNC:19630 12 12q13.2 olfactory receptor, family 8, subfamily T, member 1 pseudogene pseudo OR8T1P olfactory receptor, family 8, subfamily T, member 1 pseudogene O - 20121230 -9606 282795 OR11P1P - - HGNC:19636 14 14q11 olfactory receptor, family 11, subfamily P, member 1 pseudogene pseudo OR11P1P olfactory receptor, family 11, subfamily P, member 1 pseudogene O - 20121230 -9606 282801 OR7E148P - OR7E150P HGNC:19642 12 12p13.31 olfactory receptor, family 7, subfamily E, member 148 pseudogene pseudo OR7E148P olfactory receptor, family 7, subfamily E, member 148 pseudogene O - 20121230 -9606 282808 RAB40AL LL0XNC01-237H1.1 MRXSMP|RAR2|RLGP HGNC:25410|MIM:300405|Ensembl:ENSG00000102128|Vega:OTTHUMG00000022084 X Xq22.2 RAB40A, member RAS oncogene family-like protein-coding RAB40AL RAB40A, member RAS oncogene family-like O Ras like GTPase|SOCS box containing protein RAR2|ras-like GTPase|ras-related protein Rab-40A-like 20121230 -9606 282809 POC1B - PIX1|TUWD12|WDR51B HGNC:30836|MIM:614784|Ensembl:ENSG00000139323|HPRD:18301|Vega:OTTHUMG00000169944 12 12q21.33 POC1 centriolar protein homolog B (Chlamydomonas) protein-coding POC1B POC1 centriolar protein homolog B (Chlamydomonas) O POC1 centriolar protein homolog B|WD repeat-containing protein 51B 20121230 -9606 282849 SLEN3 - - HGNC:18544|MIM:607967 11 11p15.5 systemic lupus erythematosus with nephritis 3 unknown SLEN3 systemic lupus erythematosus with nephritis 3 O - 20120622 -9606 282890 ZNF311 DAAP-223O5.4 zf31 HGNC:13847|Ensembl:ENSG00000197935|HPRD:18325|Vega:OTTHUMG00000031292 6 6p22.1 zinc finger protein 311 protein-coding ZNF311 zinc finger protein 311 O zinc finger protein zfp-31|zinc finger protein zfp31 20121230 -9606 282966 C10orf53 - - HGNC:27421|Ensembl:ENSG00000178645|HPRD:12579|Vega:OTTHUMG00000018199 10 10q11.23 chromosome 10 open reading frame 53 protein-coding C10orf53 chromosome 10 open reading frame 53 O UPF0728 protein C10orf53 20121230 -9606 282967 MAPK6PS6 - - HGNC:18978 10 10q11.23 mitogen-activated protein kinase 6 pseudogene 6 pseudo MAPK6PS6 mitogen-activated protein kinase 6 pseudogene 6 O - 20121230 -9606 282969 FUOM RP11-122K13.9 C10orf125|FUCU|FucM HGNC:24733|Ensembl:ENSG00000148803|HPRD:12564|Vega:OTTHUMG00000019315 10 10q26.3 fucose mutarotase protein-coding FUOM fucose mutarotase O protein fucU homolog 20121230 -9606 282973 JAKMIP3 RP11-140A10.6 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 HGNC:23523|MIM:611198|Ensembl:ENSG00000188385|HPRD:12574|Vega:OTTHUMG00000150167 10 10q26.3 Janus kinase and microtubule interacting protein 3 protein-coding JAKMIP3 Janus kinase and microtubule interacting protein 3 O janus kinase and microtubule-interacting protein 3|neuroendocrine long coiled-coil 2|neuroendocrine long coiled-coil protein 2 20121230 -9606 282974 STK32C - PKE|RP11-140A10.1|YANK3 HGNC:21332|Ensembl:ENSG00000165752|HPRD:18119|Vega:OTTHUMG00000019285 10 10q26.3 serine/threonine kinase 32C protein-coding STK32C serine/threonine kinase 32C O PKE protein kinase|protein kinase (PKE)|serine/threonine-protein kinase 32C 20121230 -9606 282980 LINC00700 - - HGNC:27422 10 10p15.3 long intergenic non-protein coding RNA 700 miscRNA LINC00700 long intergenic non-protein coding RNA 700 O - 20121230 -9606 282991 BLOC1S2 - BLOS2|RP11-316M21.4 HGNC:20984|MIM:609768|Ensembl:ENSG00000196072|HPRD:12526|Vega:OTTHUMG00000018908 10 10q24.31 biogenesis of lysosomal organelles complex-1, subunit 2 protein-coding BLOC1S2 biogenesis of lysosomal organelles complex-1, subunit 2 O BLOC-1 subunit 2|biogenesis of lysosome-related organelles complex 1 subunit 2|centrosomal 10 kDa protein|centrosome protein oncogene|centrosome-associated protein 20121230 -9606 282996 RBM20 RP11-313D6.1 - HGNC:27424|MIM:613171|Ensembl:ENSG00000203867|Vega:OTTHUMG00000019043 10 10q25.2 RNA binding motif protein 20 protein-coding RBM20 RNA binding motif protein 20 O RNA-binding motif protein 20|RNA-binding protein 20|probable RNA-binding protein 20 20121230 -9606 282997 LOC282997 - - - 10 10q25.2 uncharacterized LOC282997 miscRNA - - - - 20121230 -9606 283008 FAM22E RP11-182L21.1 - HGNC:23448|HPRD:16878 10 10q22.3 family with sequence similarity 22, member E pseudo FAM22E family with sequence similarity 22, member E O - 20121230 -9606 283011 FLJ37201 - - - 10 10q23.31 tigger transposable element derived 2 pseudogene pseudo - - - - 20121230 -9606 283014 EIF2S2P3 - - HGNC:31664 10 10q23.33 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 3 pseudo EIF2S2P3 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 3 O - 20121230 -9606 283025 C10orf40 - - HGNC:23524 10 10q21.2 chromosome 10 open reading frame 40 miscRNA C10orf40 chromosome 10 open reading frame 40 O - 20121230 -9606 283028 LOC283028 - - - 10 10q11.21 uncharacterized LOC283028 unknown - - - - 20121230 -9606 283033 LOC283033 - - - 10 10q11.21 uncharacterized LOC283033 miscRNA - - - - 20121230 -9606 283038 LOC283038 - - - 10 10q26.2 uncharacterized LOC283038 miscRNA - - - - 20121230 -9606 283045 LOC283045 - - - 10 10q21.3 uncharacterized LOC283045 protein-coding - - - - 20120508 -9606 283050 LOC283050 - - - 10 10q22.3 uncharacterized LOC283050 miscRNA - - - - 20121230 -9606 283070 LOC283070 - - - 10 10p13 uncharacterized LOC283070 miscRNA - - - - 20121230 -9606 283075 LOC283075 - - - 10 10p12.31 uncharacterized LOC283075 protein-coding - - - - 20120508 -9606 283078 MKX - C10orf48|IFRX|IRXL1 HGNC:23729|MIM:601332|Ensembl:ENSG00000150051|HPRD:12577|Vega:OTTHUMG00000017862 10 10p12.1 mohawk homeobox protein-coding MKX mohawk homeobox O Iroquois family related homeodomain protein|homeobox protein Mohawk|iroquois homeobox protein-like 1 20121230 -9606 283080 C10orf126 RP11-492M23.1 bA492M23.1 HGNC:28693 10 10p12.1 chromosome 10 open reading frame 126 unknown C10orf126 chromosome 10 open reading frame 126 O - 20121230 -9606 283089 WDR11-AS1 - - HGNC:27437 10 10q26.13 WDR11 antisense RNA 1 miscRNA WDR11-AS1 WDR11 antisense RNA 1 O - 20121230 -9606 283092 OR4C13 - - HGNC:15169|Ensembl:ENSG00000258817|HPRD:17720|Vega:OTTHUMG00000166686 11 11p11.12 olfactory receptor, family 4, subfamily C, member 13 protein-coding OR4C13 olfactory receptor, family 4, subfamily C, member 13 O olfactory receptor 4C13|olfactory receptor OR11-260 20121230 -9606 283093 OR4C12 - OR11-259 HGNC:15168|Ensembl:ENSG00000221954|HPRD:14962|Vega:OTTHUMG00000166687 11 11p11.12 olfactory receptor, family 4, subfamily C, member 12 protein-coding OR4C12 olfactory receptor, family 4, subfamily C, member 12 O olfactory receptor 4C12|olfactory receptor OR11-259|seven transmembrane helix receptor 20121230 -9606 283102 KRT8P41 - - HGNC:39875 11 11p15.4 keratin 8 pseudogene 41 pseudo KRT8P41 keratin 8 pseudogene 41 O - 20121230 -9606 283104 SBF2-AS1 - - HGNC:27438 11 11p15.4 SBF2 antisense RNA 1 miscRNA SBF2-AS1 SBF2 antisense RNA 1 O - 20121230 -9606 283106 CSNK2A1P hCG_21984 - HGNC:2458 11 11p15.3 casein kinase 2, alpha 1 polypeptide pseudogene protein-coding CSNK2A1P casein kinase 2, alpha 1 polypeptide pseudogene O casein kinase 2, alpha 1 polypeptide-like 20121230 -9606 283110 OR52Z1 - OR52Z1P HGNC:19596 11 11p15.4 olfactory receptor, family 52, subfamily Z, member 1 (gene/pseudogene) pseudo OR52Z1 olfactory receptor, family 52, subfamily Z, member 1 (gene/pseudogene) O - 20121230 -9606 283111 OR51V1 - OR11-36|OR51A12 HGNC:19597|Ensembl:ENSG00000176742|HPRD:17741|Vega:OTTHUMG00000066671 11 11p15.4 olfactory receptor, family 51, subfamily V, member 1 protein-coding OR51V1 olfactory receptor, family 51, subfamily V, member 1 O odorant receptor HOR3'beta1|olfactory receptor 51A12|olfactory receptor 51V1|olfactory receptor OR11-36 20121230 -9606 283112 LOC283112 - - - 11 11p15.1 uncharacterized LOC283112 protein-coding - - - - 20120508 -9606 283114 RPS25P1 - RPS25_2_1129 HGNC:34027 11 11p14.1 ribosomal protein S25 pseudogene 1 pseudo RPS25P1 ribosomal protein S25 pseudogene 1 O - 20121230 -9606 283116 TRIM49B - - HGNC:42955|Ensembl:ENSG00000182053 11 11p11.12 tripartite motif containing 49B protein-coding TRIM49B tripartite motif containing 49B O tripartite motif-containing protein 20121230 -9606 283120 H19 - ASM|ASM1|BWS|D11S813E|LINC00008|NCRNA00008|PRO2605|WT2 HGNC:4713|MIM:103280 11 11p15.5 H19, imprinted maternally expressed transcript (non-protein coding) miscRNA H19 H19, imprinted maternally expressed transcript (non-protein coding) O - 20121230 -9606 283129 C11orf85 - - HGNC:27441|Ensembl:ENSG00000168070|HPRD:18761|Vega:OTTHUMG00000165632 11 11q13.1 chromosome 11 open reading frame 85 protein-coding C11orf85 chromosome 11 open reading frame 85 O uncharacterized protein C11orf85 20121230 -9606 283130 SLC25A45 - - HGNC:27442|MIM:610825|Ensembl:ENSG00000162241|HPRD:14142|Vega:OTTHUMG00000166255 11 11q13.1 solute carrier family 25, member 45 protein-coding SLC25A45 solute carrier family 25, member 45 O solute carrier family 25 member 45 20121230 -9606 283131 NEAT1 - LINC00084|NCRNA00084|TncRNA HGNC:30815|MIM:612769 11 11q13.1 nuclear paraspeckle assembly transcript 1 (non-protein coding) miscRNA NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) O - 20121230 -9606 283140 LOC283140 - - - 11 11q23.1 uncharacterized LOC283140 protein-coding - - - - 20120508 -9606 283143 LOC283143 - - - 11 11q23.3 uncharacterized LOC283143 miscRNA - - - - 20121230 -9606 283149 BCL9L - BCL9-2|DLNB11 HGNC:23688|MIM:609004|Ensembl:ENSG00000186174|HPRD:10612|Vega:OTTHUMG00000166414 11 11q23.3 B-cell CLL/lymphoma 9-like protein-coding BCL9L B-cell CLL/lymphoma 9-like O B-cell CLL/lymphoma 9-like protein|B-cell lymphoma 9-like protein|BCL9-like protein|nuclear co-factor of beta-catenin signalling|protein BCL9-2 20121230 -9606 283150 FOXR1 DLNB13 FOXN5 HGNC:29980|Ensembl:ENSG00000176302|HPRD:13551|Vega:OTTHUMG00000166347 11 11q23.3 forkhead box R1 protein-coding FOXR1 forkhead box R1 O forkhead box R1 variant 1|forkhead box protein N5|forkhead box protein R1 20121230 -9606 283152 CCDC153 - - HGNC:27446|Ensembl:ENSG00000248712|HPRD:18762|Vega:OTTHUMG00000156903 11 11q23.3 coiled-coil domain containing 153 protein-coding CCDC153 coiled-coil domain containing 153 O coiled-coil domain-containing protein 153 20121230 -9606 283159 OR8D1 - JCG9|OR8D3|OST004|PDJ9J14 HGNC:8481|Ensembl:ENSG00000196341|HPRD:17787|Vega:OTTHUMG00000165977 11 11q24.2 olfactory receptor, family 8, subfamily D, member 1 protein-coding OR8D1 olfactory receptor, family 8, subfamily D, member 1 O olfactory receptor 8D1|olfactory receptor 8D3|olfactory receptor OR11-301|olfactory receptor, family 8, subfamily D, member 3|olfactory receptor-like protein JCG9|olfactory-like receptor JCG9 20121230 -9606 283160 OR8D2 - JCG2 HGNC:8482|Ensembl:ENSG00000197263|HPRD:15081|Vega:OTTHUMG00000165978 11 11q24.2 olfactory receptor, family 8, subfamily D, member 2 protein-coding OR8D2 olfactory receptor, family 8, subfamily D, member 2 O olfactory receptor 8D2|olfactory receptor OR11-303|olfactory receptor-like protein JCG2 20121230 -9606 283162 OR8B4 - OR11-315|OR8B4P HGNC:8473|Ensembl:ENSG00000198657|HPRD:17786|Vega:OTTHUMG00000165916 11 11q24.2 olfactory receptor, family 8, subfamily B, member 4 protein-coding OR8B4 olfactory receptor, family 8, subfamily B, member 4 O olfactory receptor 8B4|olfactory receptor OR11-315|olfactory receptor, family 8, subfamily B, member 4 pseudogene 20121230 -9606 283165 KIRREL3-AS3 - NCRNA00288|PRR10 HGNC:26855|HPRD:08274 11 11q24.2 KIRREL3 antisense RNA 3 miscRNA KIRREL3-AS3 KIRREL3 antisense RNA 3 O - 20121230 -9606 283171 C11orf44 - - HGNC:26805|HPRD:08250 11 11q24.3 chromosome 11 open reading frame 44 protein-coding C11orf44 chromosome 11 open reading frame 44 O uncharacterized protein C11orf44 20121230 -9606 283172 LOC283172 - - - 11 11q25 calponin 2 pseudogene pseudo - - - - 20121230 -9606 283174 LOC283174 - - HPRD:17328 11 11q25 uncharacterized LOC283174 miscRNA - - - - 20121230 -9606 283177 LOC283177 - - - 11 11q25 uncharacterized LOC283177 miscRNA - - - - 20121230 -9606 283189 OR9G4 - OR11-216 HGNC:15322|Ensembl:ENSG00000172457|HPRD:17798|Vega:OTTHUMG00000166932 11 11q12.1 olfactory receptor, family 9, subfamily G, member 4 protein-coding OR9G4 olfactory receptor, family 9, subfamily G, member 4 O olfactory receptor 9G4|olfactory receptor OR11-216 20121230 -9606 283193 OR5AZ1P - - HGNC:15262 11 11q12.1 olfactory receptor, family 5, subfamily AZ, member 1 pseudogene pseudo OR5AZ1P olfactory receptor, family 5, subfamily AZ, member 1 pseudogene O - 20121230 -9606 283194 LOC283194 - - - 11 11q12.2 uncharacterized LOC283194 miscRNA - - - - 20121230 -9606 283197 LINC00301 - C11orf64|NCRNA00301 HGNC:28603|HPRD:17544 11 11q12.2 long intergenic non-protein coding RNA 301 miscRNA LINC00301 long intergenic non-protein coding RNA 301 O - 20121230 -9606 283208 P4HA3 UNQ711/PRO1374 - HGNC:30135|MIM:608987|Ensembl:ENSG00000149380|HPRD:16413|Vega:OTTHUMG00000165254 11 11q13.4 prolyl 4-hydroxylase, alpha polypeptide III protein-coding P4HA3 prolyl 4-hydroxylase, alpha polypeptide III O 4-PH alpha-3|C-P4H alpha III|collagen prolyl 4-hydroxylase alpha(III)|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III|procollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-3|prolyl 4-hydroxylase subunit alpha-3 20121230 -9606 283209 PGM2L1 - BM32A HGNC:20898|MIM:611610|Ensembl:ENSG00000165434|HPRD:11427|Vega:OTTHUMG00000168132 11 11q13.4 phosphoglucomutase 2-like 1 protein-coding PGM2L1 phosphoglucomutase 2-like 1 O PMMLP|glucose 1,6-bisphosphate synthase|glucose-1,6-bisphosphate synthase|phosphoglucomutase-2-like 1 20121230 -9606 283212 KLHL35 - - HGNC:26597|Ensembl:ENSG00000149243|HPRD:08747|Vega:OTTHUMG00000133573 11 11q13.4 kelch-like 35 (Drosophila) protein-coding KLHL35 kelch-like 35 (Drosophila) O kelch-like protein 35 20121230 -9606 283214 LOC283214 - - - 11 11q13.5 uncharacterized LOC283214 miscRNA - - - - 20121230 -9606 283218 DKFZp434E1119 - - - 11 11q14.1 uncharacterized DKFZp434E1119 unknown - - - - 20121102 -9606 283219 KCTD21 - KCASH2 HGNC:27452|Ensembl:ENSG00000188997|HPRD:18763|Vega:OTTHUMG00000166497 11 11q14.1 potassium channel tetramerisation domain containing 21 protein-coding KCTD21 potassium channel tetramerisation domain containing 21 O BTB/POZ domain-containing protein KCTD21 20121230 -9606 283226 FNTAP1 - FNTAL1 HGNC:3783 11 11q14.2 farnesyltransferase, CAAX box, alpha pseudogene 1 pseudo FNTAP1 farnesyltransferase, CAAX box, alpha pseudogene 1 O - 20121230 -9606 283229 EFCAB4A - CRACR2B HGNC:28703|MIM:614177|Ensembl:ENSG00000177685|HPRD:14645|Vega:OTTHUMG00000165267 11 11p15.5 EF-hand calcium binding domain 4A protein-coding EFCAB4A EF-hand calcium binding domain 4A O CRAC channel regulator 2B|EF-hand calcium-binding domain-containing protein 4A|calcium release-activated calcium channel regulator 2B 20121230 -9606 283232 TMEM80 - - HGNC:27453|Ensembl:ENSG00000177042|HPRD:14143|Vega:OTTHUMG00000133307 11 11p15.5 transmembrane protein 80 protein-coding TMEM80 transmembrane protein 80 O - 20121230 -9606 283234 CCDC88B - BRLZ|CCDC88|HKRP3|gipie HGNC:26757|MIM:611205|Ensembl:ENSG00000168071|HPRD:10986|Vega:OTTHUMG00000045419 11 11q12.3 coiled-coil domain containing 88B protein-coding CCDC88B coiled-coil domain containing 88B O 78 kDa glucose-regulated protein [GRP78]-interacting protein induced by ER stress|brain leucine zipper domain-containing protein|brain leucine zipper protein|coiled-coil domain-containing protein 88B|hook-related protein 3 20121230 -9606 283236 LOC283236 - - - 11 11q12.3 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) pseudogene pseudo - - - - 20121230 -9606 283237 TTC9C - - HGNC:28432|Ensembl:ENSG00000162222|HPRD:14530|Vega:OTTHUMG00000167607 11 11q12.3 tetratricopeptide repeat domain 9C protein-coding TTC9C tetratricopeptide repeat domain 9C O TPR repeat protein 9C|tetratricopeptide repeat protein 9C 20121230 -9606 283238 SLC22A24 - NET46 HGNC:28542|MIM:611698|Ensembl:ENSG00000197658|HPRD:14591|Vega:OTTHUMG00000165372 11 11q12.3 solute carrier family 22, member 24 protein-coding SLC22A24 solute carrier family 22, member 24 O solute carrier family 22 member 24 20121230 -9606 283248 RCOR2 - - HGNC:27455|Ensembl:ENSG00000167771|HPRD:15234|Vega:OTTHUMG00000150472 11 11q13.1 REST corepressor 2 protein-coding RCOR2 REST corepressor 2 O - 20121230 -9606 283254 HARBI1 - C11orf77 HGNC:26522|Ensembl:ENSG00000180423|HPRD:08728|Vega:OTTHUMG00000166537 11 11p11.2 harbinger transposase derived 1 protein-coding HARBI1 harbinger transposase derived 1 O harbinger transposase-derived nuclease|putative nuclease HARBI1 20121230 -9606 283257 TRIM51FP - RNF18B|TRIM49B HGNC:43966 11 11p11.12 tripartite motif-containing 51F, pseudogene pseudo TRIM51FP tripartite motif-containing 51F, pseudogene O - 20121230 -9606 283267 LINC00294 - NCRNA00294 HGNC:27456|MIM:612296 11 11p13 long intergenic non-protein coding RNA 294 miscRNA LINC00294 long intergenic non-protein coding RNA 294 O - 20121230 -9606 283270 LOC283270 - - - 11 11p13 uncharacterized LOC283270 protein-coding - - - - 20120508 -9606 283278 LOC283278 - - - 11 11p15.1 uncharacterized LOC283278 protein-coding - - - - 20120508 -9606 283284 IGSF22 - - HGNC:26750|Ensembl:ENSG00000179057|HPRD:08229|Vega:OTTHUMG00000160502 11 11p15.1 immunoglobulin superfamily, member 22 protein-coding IGSF22 immunoglobulin superfamily, member 22 O immunoglobulin superfamily member 22 20121230 -9606 283297 OR10A4 - JCG5|OR10A4P HGNC:15130|Ensembl:ENSG00000170782|HPRD:17664|Vega:OTTHUMG00000165740 11 11p15.4 olfactory receptor, family 10, subfamily A, member 4 protein-coding OR10A4 olfactory receptor, family 10, subfamily A, member 4 O hP2 olfactory receptor|olfactory receptor 10A4|olfactory receptor OR11-87|olfactory receptor, family 10, subfamily A, member 4 pseudogene|olfactory receptor-like protein JCG5 20121230 -9606 283298 OLFML1 UNQ564/PRO1126 UNQ564 HGNC:24473|Ensembl:ENSG00000183801|HPRD:17661|Vega:OTTHUMG00000165527 11 11p15.4 olfactomedin-like 1 protein-coding OLFML1 olfactomedin-like 1 O MVAL564|olfactomedin-like protein 1 20121230 -9606 283299 LOC283299 - - - 11 11p15.4 uncharacterized LOC283299 miscRNA - - - - 20121230 -9606 283303 MRGPRG-AS1 HSD40 C11orf36|HSD-40 HGNC:26691|HPRD:08770 11 11p15.4 MRGPRG antisense RNA 1 miscRNA MRGPRG-AS1 MRGPRG antisense RNA 1 O - 20121230 -9606 283310 OTOGL - C12orf64|DFNB84B HGNC:26901|MIM:614925|Ensembl:ENSG00000165899|HPRD:08815|Vega:OTTHUMG00000150509 12 12q21.31 otogelin-like protein-coding OTOGL otogelin-like O otogelin-like protein 20121230 -9606 283314 C1RL-AS1 UNQ2963 MATL2963 HGNC:27461 12 12p13.31 C1RL antisense RNA 1 miscRNA C1RL-AS1 C1RL antisense RNA 1 O - 20121230 -9606 283316 CD163L1 UNQ6434/PRO23202 CD163B|M160 HGNC:30375|MIM:606079|Ensembl:ENSG00000177675|HPRD:07301|Vega:OTTHUMG00000168325 12 12p13.3 CD163 molecule-like 1 protein-coding CD163L1 CD163 molecule-like 1 O CD163 antigen B|CD163 antigen-like 1|scavenger receptor cysteine-rich type 1 protein M160 20121230 -9606 283320 HSPD1P12 - HSPD1-10P HGNC:35140 12 12p13.31 heat shock 60kDa protein 1 (chaperonin) pseudogene 12 pseudo HSPD1P12 heat shock 60kDa protein 1 (chaperonin) pseudogene 12 O - 20121230 -9606 283332 LOC283332 - - - 12 12q13.12 uncharacterized LOC283332 miscRNA - - - - 20121230 -9606 283335 LOC283335 - - - 12 12q13.13 uncharacterized LOC283335 miscRNA - - - - 20121230 -9606 283337 ZNF740 - Zfp740 HGNC:27465|Ensembl:ENSG00000139651|HPRD:17329|Vega:OTTHUMG00000170027 12 12q13.13 zinc finger protein 740 protein-coding ZNF740 zinc finger protein 740 O oriLyt TD-element-binding protein 7 20121230 -9606 283345 RPL13P5 - RPL13-2|RPL13L|RPL13_4_1199|RRPL13L HGNC:30363 12 12p13.31 ribosomal protein L13 pseudogene 5 pseudo RPL13P5 ribosomal protein L13 pseudogene 5 O - 20121230 -9606 283349 RASSF3 - RASSF5 HGNC:14271|MIM:607019|Ensembl:ENSG00000153179|HPRD:08448|Vega:OTTHUMG00000168812 12 12q14.2 Ras association (RalGDS/AF-6) domain family member 3 protein-coding RASSF3 Ras association (RalGDS/AF-6) domain family member 3 O Ras association (RalGDS/AF-6) domain family 3|ras association domain-containing protein 3 20121230 -9606 283352 LOC283352 - - - 12 12q24.33 uncharacterized LOC283352 protein-coding - - - - 20120508 -9606 283357 LOC283357 - - - 12 12p13.33 uncharacterized LOC283357 protein-coding - - - - 20120622 -9606 283358 B4GALNT3 - - HGNC:24137|MIM:612220|Ensembl:ENSG00000139044|HPRD:12514|Vega:OTTHUMG00000129283 12 12p13.33 beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 O B4GalNAcT3|Beta4GalNAc-T3|N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N- acetylgalactosaminyltransferase|N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2|NGalNAc-T2|beta-1,4-N-acetylgalactosaminyltransferase 3|beta-1,4-N-acetylgalactosaminyltransferase III|beta4GalNAcT3 20121230 -9606 283365 OR6C6 - - HGNC:31293|Ensembl:ENSG00000188324|HPRD:17775|Vega:OTTHUMG00000168101 12 12q13.2 olfactory receptor, family 6, subfamily C, member 6 protein-coding OR6C6 olfactory receptor, family 6, subfamily C, member 6 O olfactory receptor 6C6 20121230 -9606 283372 FLJ25613 - - - 12 12q13.13 uncharacterized protein FLJ25613 protein-coding - - - uncharacterized protein LOC283372 20120710 -9606 283373 ANKRD52 UNQ5837 ANKRD33 HGNC:26614|Ensembl:ENSG00000139645|Vega:OTTHUMG00000170329 12 12q13.3 ankyrin repeat domain 52 protein-coding ANKRD52 ankyrin repeat domain 52 O CVWG5837|PP6-ARS-C|ankyrin repeat domain 33|ankyrin repeat domain-containing protein 52|protein phosphatase 6 ankyrin repeat subunit C|serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C|serine/threonine-protein phosphatase 6 regulatory subunit ARS-C 20121230 -9606 283375 SLC39A5 - LZT-Hs7|ZIP5 HGNC:20502|MIM:608730|Ensembl:ENSG00000139540|Vega:OTTHUMG00000156962 12 12q13.3 solute carrier family 39 (metal ion transporter), member 5 protein-coding SLC39A5 solute carrier family 39 (metal ion transporter), member 5 O ZIP-5|solute carrier family 39 member 5|zinc transporter ZIP5|zrt- and Irt-like protein 5 20121230 -9606 283377 SPRYD4 - - HGNC:27468|Ensembl:ENSG00000176422|HPRD:11251 12 12q13.3 SPRY domain containing 4 protein-coding SPRYD4 SPRY domain containing 4 O SPRY domain-containing protein 4 20121230 -9606 283383 GPR133 - PGR25 HGNC:19893|MIM:613639|Ensembl:ENSG00000111452|HPRD:17061|Vega:OTTHUMG00000168339 12 12q24.33 G protein-coupled receptor 133 protein-coding GPR133 G protein-coupled receptor 133 O G-protein coupled receptor PGR25|probable G-protein coupled receptor 133 20121230 -9606 283385 MORN3 - - HGNC:29807|Ensembl:ENSG00000139714|HPRD:17330|Vega:OTTHUMG00000169075 12 12q24.31 MORN repeat containing 3 protein-coding MORN3 MORN repeat containing 3 O MORN repeat-containing protein 3|membrane occupation and recognition nexus repeat containing protein 20121230 -9606 283387 LOC283387 - - - 12 12q13.2 uncharacterized LOC283387 unknown - - - - 20120508 -9606 283392 TRHDE-AS1 - - HGNC:27471|HPRD:18764 12 12q21.1 TRHDE antisense RNA 1 miscRNA TRHDE-AS1 TRHDE antisense RNA 1 O - 20121230 -9606 283398 SUCLG2P2 - - HGNC:43997 12 12q22 succinate-CoA ligase, GDP-forming, beta subunit pseudogene 2 pseudo SUCLG2P2 succinate-CoA ligase, GDP-forming, beta subunit pseudogene 2 O - 20121230 -9606 283403 LOC283403 hCG_2038621 - - 12 12q13.13 uncharacterized LOC283403 protein-coding - - - uncharacterized protein LOC283403 20121230 -9606 283404 LINC00592 - - HGNC:27474 12 12q13.13 long intergenic non-protein coding RNA 592 miscRNA LINC00592 long intergenic non-protein coding RNA 592 O - 20121230 -9606 283412 RPL29P12 - RPL29_6_558 HGNC:36608 5 5p12 ribosomal protein L29 pseudogene 12 pseudo RPL29P12 ribosomal protein L29 pseudogene 12 O - 20121230 -9606 283416 C12orf61 - - HGNC:26364|Ensembl:ENSG00000221949|HPRD:08070|Vega:OTTHUMG00000169983 12 12q14.1 chromosome 12 open reading frame 61 protein-coding C12orf61 chromosome 12 open reading frame 61 O putative uncharacterized protein C12orf61 20121230 -9606 283417 DPY19L2 UNQ3127/PRO10284 SPATA34|SPGF9 HGNC:19414|MIM:613893|Ensembl:ENSG00000177990|HPRD:08151|Vega:OTTHUMG00000168712 12 12q14.2 dpy-19-like 2 (C. elegans) protein-coding DPY19L2 dpy-19-like 2 (C. elegans) O protein dpy-19 homolog 2|spermatogenesis associated 34 20121230 -9606 283420 CLEC9A UNQ9341/PRO34046 DNGR1|UNQ9341 HGNC:26705|MIM:612252|Ensembl:ENSG00000197992|HPRD:16723|Vega:OTTHUMG00000168398 12 12p13.2 C-type lectin domain family 9, member A protein-coding CLEC9A C-type lectin domain family 9, member A O C-type lectin domain family 9 member A|HEEE9341 20121230 -9606 283422 C12orf36 - - HGNC:26598|HPRD:08166 12 12p13.1 chromosome 12 open reading frame 36 miscRNA C12orf36 chromosome 12 open reading frame 36 O - 20121230 -9606 283431 GAS2L3 - G2L3 HGNC:27475|Ensembl:ENSG00000139354|HPRD:13568|Vega:OTTHUMG00000170439 12 12q23.1 growth arrest-specific 2 like 3 protein-coding GAS2L3 growth arrest-specific 2 like 3 O GAS2-like protein 3|growth arrest-specific protein 2-like 3 20121230 -9606 283432 LINC00485 - - HGNC:27476 12 12q23.2 long intergenic non-protein coding RNA 485 miscRNA LINC00485 long intergenic non-protein coding RNA 485 O - 20121230 -9606 283435 LOC283435 - - - 12 12q24.32 uncharacterized LOC283435 unknown - - - - 20120508 -9606 283440 LOC283440 - - - 12 12p13.33 uncharacterized LOC283440 miscRNA - - - - 20121230 -9606 283446 MYO1H - - HGNC:13879|MIM:614636|Ensembl:ENSG00000174527|HPRD:08227|Vega:OTTHUMG00000169252 12 12q24.11 myosin IH protein-coding MYO1H myosin IH O myosin-1H|myosin-Ih|unconventional myosin-Ih 20121230 -9606 283450 HECTD4 - C12orf51 HGNC:26611|Ensembl:ENSG00000173064|HPRD:08170|Vega:OTTHUMG00000150719 12 12q24.13 HECT domain containing E3 ubiquitin protein ligase 4 protein-coding HECTD4 HECT domain containing E3 ubiquitin protein ligase 4 O AF-1 specific protein phosphatase|HECT domain-containing protein 4|probable E3 ubiquitin-protein ligase C12orf51|probable E3 ubiquitin-protein ligase HECTD4|transmembrane protein C12orf51 20121230 -9606 283454 LOC283454 - - - 12 12q24.23 uncharacterized LOC283454 protein-coding - - - - 20120508 -9606 283455 KSR2 - - HGNC:18610|MIM:610737|Ensembl:ENSG00000171435|HPRD:13952|Vega:OTTHUMG00000169020 12 12q24.22-q24.23 kinase suppressor of ras 2 protein-coding KSR2 kinase suppressor of ras 2 O kinase suppressor of Ras 2 20121230 -9606 283458 NME2P1 - - HGNC:31358 12 12q24.31 NME/NM23 nucleoside diphosphate kinase 2 pseudogene 1 pseudo NME2P1 NME/NM23 nucleoside diphosphate kinase 2 pseudogene 1 O - 20121230 -9606 283459 GATC - 15E1.2 HGNC:25068|Ensembl:ENSG00000257218|HPRD:15934|Vega:OTTHUMG00000047788 12 12q24.31 glutamyl-tRNA(Gln) amidotransferase, subunit C protein-coding GATC glutamyl-tRNA(Gln) amidotransferase, subunit C O glu-AdT subunit C|glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog 20121230 -9606 283460 HNF1A-AS1 - C12orf27|NCRNA00262 HGNC:26785 12 12q24.31 HNF1A antisense RNA 1 miscRNA HNF1A-AS1 HNF1A antisense RNA 1 O - 20121230 -9606 283461 C12orf40 - - HGNC:26846|Ensembl:ENSG00000180116|HPRD:08806|Vega:OTTHUMG00000133567 12 12q12 chromosome 12 open reading frame 40 protein-coding C12orf40 chromosome 12 open reading frame 40 O uncharacterized protein C12orf40 20121230 -9606 283463 MUC19 - MUC-19 HGNC:14362|MIM:612170 12 12q12 mucin 19, oligomeric protein-coding MUC19 mucin 19, oligomeric O mucin-19 20121230 -9606 283464 GXYLT1 - GLT8D3 HGNC:27482|MIM:613321|Ensembl:ENSG00000151233|Vega:OTTHUMG00000169379 12 12q12 glucoside xylosyltransferase 1 protein-coding GXYLT1 glucoside xylosyltransferase 1 O glycosyltransferase 8 domain containing 3|glycosyltransferase 8 domain-containing protein 3 20121230 -9606 283471 TMPRSS12 - - HGNC:28779|Ensembl:ENSG00000186452|HPRD:07133|Vega:OTTHUMG00000169483 12 12q13.12 transmembrane (C-terminal) protease, serine 12 protein-coding TMPRSS12 transmembrane (C-terminal) protease, serine 12 O transmembrane protease serine 12|transmembrane protease, serine 12 20121230 -9606 283475 LOC283475 - - - 13 13q32.2 uncharacterized LOC283475 protein-coding - - - - 20111113 -9606 283480 FGF14-IT1 - - HGNC:42774 13 13q33.1 FGF14 intronic transcript 1 (non-protein coding) miscRNA FGF14-IT1 FGF14 intronic transcript 1 (non-protein coding) O - 20121230 -9606 283481 FGF14-AS2 - - HGNC:44368 13 13q33.1 FGF14 antisense RNA 2 miscRNA FGF14-AS2 FGF14 antisense RNA 2 O - 20121230 -9606 283482 LOC283482 - - - 13 13q33.1 uncharacterized LOC283482 unknown - - - - 20120508 -9606 283483 LINC00551 - - HGNC:43691 13 13q33.3 long intergenic non-protein coding RNA 551 miscRNA LINC00551 long intergenic non-protein coding RNA 551 O - 20121230 -9606 283484 LOC283484 - - - 13 13q33.3 uncharacterized LOC283484 protein-coding - - - - 20120508 -9606 283485 LOC283485 - - - 13 13q34 uncharacterized LOC283485 protein-coding - - - - 20120508 -9606 283486 LINC00567 - - HGNC:43711 13 13q34 long intergenic non-protein coding RNA 567 unknown LINC00567 long intergenic non-protein coding RNA 567 O - 20120511 -9606 283487 LINC00346 - C13orf29|NCRNA00346 HGNC:27492|HPRD:14144 13 13q34 long intergenic non-protein coding RNA 346 miscRNA LINC00346 long intergenic non-protein coding RNA 346 O - 20121230 -9606 283489 CHAMP1 - C13orf8|CAMP|CHAMP|ZNF828 HGNC:20311|Ensembl:ENSG00000198824|HPRD:10707|Vega:OTTHUMG00000017404 13 13q34 chromosome alignment maintaining phosphoprotein 1 protein-coding CHAMP1 chromosome alignment maintaining phosphoprotein 1 O chromosome alignment-maintaining phosphoprotein 1|zinc finger protein 828 20121230 -9606 283491 OR7E156P - - HGNC:31311 13 13q21.31 olfactory receptor, family 7, subfamily E, member 156 pseudogene pseudo OR7E156P olfactory receptor, family 7, subfamily E, member 156 pseudogene O - 20121230 -9606 283501 LOC283501 - - - 13 13q34 uncharacterized LOC283501 protein-coding - - - - 20120508 -9606 283507 SUGT1P3 RP11-2P5.2 SUGT1L1 HGNC:20513 13 13q14.11 suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3 pseudo SUGT1P3 suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3 O - 20121230 -9606 283508 LOC283508 - - - 13 13q13.3 uncharacterized LOC283508 miscRNA - - - - 20120622 -9606 283514 SIAH3 RP11-480G1.1 - HGNC:30553|Ensembl:ENSG00000215475|HPRD:14145|Vega:OTTHUMG00000016862 13 13q14.13 siah E3 ubiquitin protein ligase family member 3 protein-coding SIAH3 siah E3 ubiquitin protein ligase family member 3 O seven in absentia homolog 3|siah-3 20121230 -9606 283516 LOC283516 - - - 13 13q14.11 uncharacterized LOC283516 protein-coding - - - - 20120508 -9606 283518 KCNRG RP11-34F20.6 DLTET HGNC:18893|MIM:607947|Ensembl:ENSG00000198553|HPRD:06404|Vega:OTTHUMG00000140140 13 13q14.2 potassium channel regulator protein-coding KCNRG potassium channel regulator O potassium channel regulatory protein|putative potassium channel regulatory protein 20121230 -9606 283521 LINC00282 RP11-327P2.4 NCRNA00282 HGNC:26737 13 13q14.3 long intergenic non-protein coding RNA 282 miscRNA LINC00282 long intergenic non-protein coding RNA 282 O - 20121230 -9606 283523 TERF1P5 RP11-484H12.6 - HGNC:39686 13 13q11 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 5 pseudo TERF1P5 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 5 O - 20121230 -9606 283537 SLC46A3 RP11-97E23.2 FKSG16 HGNC:27501|Ensembl:ENSG00000139508|HPRD:14146|Vega:OTTHUMG00000016650 13 13q12.3 solute carrier family 46, member 3 protein-coding SLC46A3 solute carrier family 46, member 3 O solute carrier family 46 member 3 20121230 -9606 283547 LINC00639 - - HGNC:27502 14 14q21.1 long intergenic non-protein coding RNA 639 miscRNA LINC00639 long intergenic non-protein coding RNA 639 O - 20121230 -9606 283551 C14orf182 - - HGNC:27503|Ensembl:ENSG00000214900|HPRD:13397|Vega:OTTHUMG00000167699 14 14q21.3 chromosome 14 open reading frame 182 protein-coding C14orf182 chromosome 14 open reading frame 182 O uncharacterized protein C14orf182 20121230 -9606 283553 LINC00640 - - HGNC:44291 14 14q22.1 long intergenic non-protein coding RNA 640 miscRNA LINC00640 long intergenic non-protein coding RNA 640 O - 20121230 -9606 283554 GPR137C - TM7SF1L2 HGNC:25445|Ensembl:ENSG00000180998|Vega:OTTHUMG00000171104 14 14q22.1 G protein-coupled receptor 137C protein-coding GPR137C G protein-coupled receptor 137C O G protein-coupled receptor TM7SF1L2|integral membrane protein GPR137C|transmembrane 7 superfamily member 1-like 2 protein 20121230 -9606 283556 UBE2L1 - L-UBC|UBC4|UBCH7N3|UBCL|UBE2L7|UBE2L7P|UBEL1 HGNC:12486|MIM:600012 14 14q22.3 ubiquitin-conjugating enzyme E2L 1 (pseudogene) pseudo UBE2L1 ubiquitin-conjugating enzyme E2L 1 (pseudogene) O - 20121230 -9606 283562 RPL21P9 - - HGNC:19780 14 14q24.1 ribosomal protein L21 pseudogene 9 pseudo RPL21P9 ribosomal protein L21 pseudogene 9 O - 20121230 -9606 283571 PROX2 - PROX-2 HGNC:26715|Ensembl:ENSG00000119608|Vega:OTTHUMG00000171481 14 14q24.3 prospero homeobox 2 protein-coding PROX2 prospero homeobox 2 O homeobox prospero-like protein PROX2|prospero homeobox protein 2 20121230 -9606 283575 LOC283575 - - - 14 14q24.3 uncharacterized LOC283575 unknown - - - - 20121230 -9606 283576 ZDHHC22 hCG_1643587 C14orf59 HGNC:20106|Ensembl:ENSG00000177108|HPRD:12655|Vega:OTTHUMG00000171575 14 14q24.3 zinc finger, DHHC-type containing 22 protein-coding ZDHHC22 zinc finger, DHHC-type containing 22 O DHHC-22|putative palmitoyltransferase ZDHHC22|zinc finger DHHC domain-containing protein 22|zinc finger, DHHC domain containing 22 20121230 -9606 283578 TMED8 L10 FAM15B HGNC:18633|Ensembl:ENSG00000100580|HPRD:18201|Vega:OTTHUMG00000171552 14 14q24.3 transmembrane emp24 protein transport domain containing 8 protein-coding TMED8 transmembrane emp24 protein transport domain containing 8 O family with sequence similarity 15, member B|protein TMED8|transmembrane emp24 domain containing 8 20121230 -9606 283579 C14orf178 - - HGNC:26385|Ensembl:ENSG00000197734|HPRD:08080|Vega:OTTHUMG00000171528 14 14q24.3 chromosome 14 open reading frame 178 protein-coding C14orf178 chromosome 14 open reading frame 178 O uncharacterized protein C14orf178 20121230 -9606 283585 LOC283585 - - - 14 14q31.3 uncharacterized LOC283585 miscRNA - - - - 20121230 -9606 283587 LOC283587 - - - 14 14q31.3 uncharacterized LOC283587 miscRNA - - - - 20121230 -9606 283588 LOC283588 - - - 14 14q32.11 uncharacterized LOC283588 unknown - - - - 20121230 -9606 283592 FAM181A-AS1 - C14orf86 HGNC:20133 14 14q32.12 FAM181A antisense RNA 1 miscRNA FAM181A-AS1 FAM181A antisense RNA 1 O - 20121230 -9606 283596 SNHG10 - C14orf62|LINC00063|NCRNA00063 HGNC:27510 14 14q32.13 small nucleolar RNA host gene 10 (non-protein coding) miscRNA SNHG10 small nucleolar RNA host gene 10 (non-protein coding) O - 20121230 -9606 283598 C14orf177 - - HGNC:26375|Ensembl:ENSG00000176605|HPRD:08075|Vega:OTTHUMG00000167745 14 14q32.2 chromosome 14 open reading frame 177 protein-coding C14orf177 chromosome 14 open reading frame 177 O putative uncharacterized protein C14orf177 20121230 -9606 283600 SLC25A47 HMFN1655 C14orf68|HDMCP HGNC:20115|MIM:609911|Ensembl:ENSG00000140107|HPRD:16620|Vega:OTTHUMG00000171571 14 14q32.2 solute carrier family 25, member 47 protein-coding SLC25A47 solute carrier family 25, member 47 O hepatocellular carcinoma down-regulated mitochondrial carrier protein|hepatocellular carcinoma-downregulated mitochondrial carrier protein|solute carrier family 25 member 47 20121230 -9606 283601 LINC00523 - C14orf70 HGNC:20117|HPRD:16621 14 14q32.2 long intergenic non-protein coding RNA 523 miscRNA LINC00523 long intergenic non-protein coding RNA 523 O - 20121230 -9606 283603 RPL26P4 - RPL26_18_1407 HGNC:19807 14 14q32.31 ribosomal protein L26 pseudogene 4 pseudo RPL26P4 ribosomal protein L26 pseudogene 4 O - 20121230 -9606 283617 OR4K3 - OR14-10|OR4K3P HGNC:14731 14 14q11.2 olfactory receptor, family 4, subfamily K, member 3 (gene/pseudogene) pseudo OR4K3 olfactory receptor, family 4, subfamily K, member 3 (gene/pseudogene) O - 20121230 -9606 283624 LINC00641 - - HGNC:27511 14 14q11.2 long intergenic non-protein coding RNA 641 miscRNA LINC00641 long intergenic non-protein coding RNA 641 O - 20121230 -9606 283629 TSSK4 - C14orf20|STK22E|TSK-4|TSK4|TSSK5 HGNC:19825|MIM:610711|Ensembl:ENSG00000139908|HPRD:12642|Vega:OTTHUMG00000029323 14 14q12 testis-specific serine kinase 4 protein-coding TSSK4 testis-specific serine kinase 4 O serine/threonine kinase 22E|serine/threonine-protein kinase 22E|testis-specific serine/threonine-protein kinase 4 20121230 -9606 283631 BTF3P2 - - HGNC:19924 14 14q12 basic transcription factor 3, pseudogene 2 pseudo BTF3P2 basic transcription factor 3, pseudogene 2 O - 20121230 -9606 283635 FAM177A1 - C14orf24 HGNC:19829|Ensembl:ENSG00000151327|HPRD:12644|Vega:OTTHUMG00000140217 14 14q13.2 family with sequence similarity 177, member A1 protein-coding FAM177A1 family with sequence similarity 177, member A1 O protein FAM177A1 20121230 -9606 283638 CEP170B - CEP170R|FAM68C|KIAA0284 HGNC:20362|Ensembl:ENSG00000099814|HPRD:12388|Vega:OTTHUMG00000170763 14 14q32.33 centrosomal protein 170B protein-coding CEP170B centrosomal protein 170B O Cep170-related|protein KIAA0284 20121230 -9606 283643 C14orf80 - - HGNC:20127|Ensembl:ENSG00000185347|HPRD:12658|Vega:OTTHUMG00000170426 14 14q32.33 chromosome 14 open reading frame 80 protein-coding C14orf80 chromosome 14 open reading frame 80 O uncharacterized protein C14orf80 20121230 -9606 283651 HMGN2P46 - C15orf21|D-PCa-2 HGNC:26817|MIM:611314|HPRD:16622 15 15q21.1 high mobility group nucleosomal binding domain 2 pseudogene 46 pseudo HMGN2P46 high mobility group nucleosomal binding domain 2 pseudogene 46 O - 20121230 -9606 283652 SLC24A5 - JSX|NCKX5|SHEP4 HGNC:20611|MIM:609802|Ensembl:ENSG00000188467|HPRD:18055|Vega:OTTHUMG00000131494 15 15q21.1 solute carrier family 24, member 5 protein-coding SLC24A5 solute carrier family 24, member 5 O Na(+)/K(+)/Ca(2+)-exchange protein 5|ion transporter JSX|sodium/potassium/calcium exchanger 5|solute carrier family 24 (sodium/potassium/calcium exchanger), member 5 20121230 -9606 283658 LOC283658 - - - 15 15q21.1 uncharacterized LOC283658 protein-coding - - - - 20120508 -9606 283659 PRTG - IGDCC5 HGNC:26373|MIM:613261|Ensembl:ENSG00000166450|HPRD:18765|Vega:OTTHUMG00000172591 15 15q21.3 protogenin protein-coding PRTG protogenin O immunoglobulin superfamily, DCC subclass, member 5|protein Shen-Dan|protogenin homolog (Gallus gallus)|shen-dan 20121230 -9606 283663 LOC283663 - - - 15 15q21.3 uncharacterized LOC283663 miscRNA - - - - 20121230 -9606 283665 LOC283665 - - - 15 15q21.2 uncharacterized LOC283665 protein-coding - - - - 20120508 -9606 283673 LINC00277 - NCRNA00277|TMEM84 HGNC:26596|HPRD:08746 15 15q23 long intergenic non-protein coding RNA 277 miscRNA LINC00277 long intergenic non-protein coding RNA 277 O - 20121230 -9606 283674 LOC283674 - - - 15 15q22.32 uncharacterized LOC283674 protein-coding - - - - 20120508 -9606 283677 C15orf60 - - HGNC:25065|Ensembl:ENSG00000183324|Vega:OTTHUMG00000172549 15 15q22 chromosome 15 open reading frame 60 protein-coding C15orf60 chromosome 15 open reading frame 60 O meiotic recombination protein REC114-like 20121230 -9606 283682 LOC283682 - - - 15 15q26.1-q26.2 uncharacterized LOC283682 unknown - - - - 20120511 -9606 283683 LOC283683 - - - 15 15q11.2 uncharacterized LOC283683 miscRNA - - - - 20121230 -9606 283685 GOLGA6L2 - CT105 HGNC:26695|Ensembl:ENSG00000174450|HPRD:08206|Vega:OTTHUMG00000176417 15 15q11.2 golgin A6 family-like 2 protein-coding GOLGA6L2 golgin A6 family-like 2 O cancer/testis antigen 105|golgi autoantigen, golgin subfamily a, 6-like 2|golgin subfamily A member 6-like protein 2 20121230 -9606 283687 C15orf37 - - HGNC:27521|HPRD:14147 15 15q25.1 chromosome 15 open reading frame 37 miscRNA C15orf37 chromosome 15 open reading frame 37 O - 20121230 -9606 283688 LOC283688 - - - 15 15q25.1 uncharacterized LOC283688 miscRNA - - - - 20121230 -9606 283692 LOC283692 - - - 15 15q25.1 uncharacterized LOC283692 miscRNA - - - - 20121230 -9606 283693 LOC283693 - - - 15 15q25.2 actin, alpha 2, smooth muscle, aorta pseudogene pseudo - - - - 20121230 -9606 283694 OR4N4 - OR15-1|OR15-5 HGNC:15375|Ensembl:ENSG00000183706|HPRD:17731|Vega:OTTHUMG00000171739 15 15q11.2 olfactory receptor, family 4, subfamily N, member 4 protein-coding OR4N4 olfactory receptor, family 4, subfamily N, member 4 O olfactory receptor 4N4|olfactory receptor OR15-1|olfactory receptor OR15-5 20121230 -9606 283698 SYNGR2P1 - SYNGR2P HGNC:11500 15 15q13.2 synaptogyrin 2 pseudogene 1 pseudo SYNGR2P1 synaptogyrin 2 pseudogene 1 O - 20121230 -9606 283701 LOC283701 - - - 15 15q13.1 uncharacterized LOC283701 unknown - - - - 20120710 -9606 283710 LOC283710 - - - 15 15q13.3 uncharacterized LOC283710 protein-coding - - - uncharacterized protein LOC283710 20121230 -9606 283711 UBE2CP4 - - HGNC:43553 15 15q13.3 ubiquitin-conjugating enzyme E2C pseudogene 4 pseudo UBE2CP4 ubiquitin-conjugating enzyme E2C pseudogene 4 O - 20121230 -9606 283713 LOC283713 - - - 15 15q13.1 uncharacterized LOC283713 protein-coding - - - - 20120508 -9606 283726 FAM154B - - HGNC:33727|Ensembl:ENSG00000188659|HPRD:16817|Vega:OTTHUMG00000172646 15 15q25.2 family with sequence similarity 154, member B protein-coding FAM154B family with sequence similarity 154, member B O protein FAM154B 20121230 -9606 283728 LOC283728 - - - 15 15q25.2 uncharacterized LOC283728 protein-coding - - - - 20120508 -9606 283731 LOC283731 - - - 15 15q24.1 uncharacterized LOC283731 miscRNA - - - - 20121230 -9606 283737 LOC283737 - - - 15 15q25.3 uncharacterized LOC283737 protein-coding - - - - 20121018 -9606 283738 NTRK3-AS1 - - HGNC:27532 15 15q25.3 NTRK3 antisense RNA 1 miscRNA NTRK3-AS1 NTRK3 antisense RNA 1 O - 20121230 -9606 283742 FAM98B - - HGNC:26773|Ensembl:ENSG00000171262|HPRD:08786|Vega:OTTHUMG00000129831 15 15q14 family with sequence similarity 98, member B protein-coding FAM98B family with sequence similarity 98, member B O protein FAM98B 20121230 -9606 283745 LOC283745 - - - 15 15q14 uncharacterized LOC283745 protein-coding - - - - 20120508 -9606 283747 TCEB1P2 - - HGNC:17762 15 15q15.1 transcription elongation factor B (SIII), polypeptide 1 pseudogene 2 pseudo TCEB1P2 transcription elongation factor B (SIII), polypeptide 1 pseudogene 2 O - 20121230 -9606 283748 PLA2G4D - cPLA2delta HGNC:30038|MIM:612864|Ensembl:ENSG00000159337|HPRD:07145|Vega:OTTHUMG00000172587 15 15q15.1 phospholipase A2, group IVD (cytosolic) protein-coding PLA2G4D phospholipase A2, group IVD (cytosolic) O cPLA2-delta|cytosolic phospholipase A2 delta|phospholipase A2 delta, cytosolic|phospholipase A2 group IVD 20121230 -9606 283755 HERC2P3 - D15F37S4 HGNC:4871|HPRD:18766 15 15q11.1 hect domain and RLD 2 pseudogene 3 pseudo HERC2P3 hect domain and RLD 2 pseudogene 3 O - 20121230 -9606 283761 LOC283761 - - - 15 15q26.1 uncharacterized LOC283761 miscRNA - - - - 20121230 -9606 283767 GOLGA6L1 - - HGNC:37444|Ensembl:ENSG00000197414|Vega:OTTHUMG00000171883 15 15q11.2 golgin A6 family-like 1 protein-coding GOLGA6L1 golgin A6 family-like 1 O Golgin subfamily A member 6-like protein 1|golgi autoantigen, golgin subfamily a, 6-like 1 20121230 -9606 283768 GOLGA8G - - HGNC:25328|HPRD:17331 15 15q13.1 golgin A8 family, member G pseudo GOLGA8G golgin A8 family, member G O - 20121230 -9606 283777 FAM169B - - HGNC:26835|Ensembl:ENSG00000185087|HPRD:08265|Vega:OTTHUMG00000171863 15 15q26.3 family with sequence similarity 169, member B protein-coding FAM169B family with sequence similarity 169, member B O protein FAM169B 20121230 -9606 283788 LOC283788 - - - 15 - FSHD region gene 1 pseudogene pseudo - - - - 20121230 -9606 283796 GOLGA8I - GOLGA8IP|GOLGA9P HGNC:26660|HPRD:08189 15 15q11.2 golgin A8 family, member I pseudo GOLGA8I golgin A8 family, member I O - 20121230 -9606 283804 LOC283804 - - - 15 15q11.2 disintegrin and metalloproteinase domain-containing protein 21-like pseudo - - - - 20121209 -9606 283807 FBXL22 - Fbl22 HGNC:27537|MIM:609088|Ensembl:ENSG00000197361|Ensembl:ENSG00000259662|HPRD:16432|Vega:OTTHUMG00000132905 15 15q22.31 F-box and leucine-rich repeat protein 22 protein-coding FBXL22 F-box and leucine-rich repeat protein 22 O F-box/LRR-repeat protein 22 20121230 -9606 283820 NOMO2 - Nomo|PM5 HGNC:22652|MIM:609158|Ensembl:ENSG00000185164|HPRD:12375|Vega:OTTHUMG00000131366 16 16p12.3 NODAL modulator 2 protein-coding NOMO2 NODAL modulator 2 O nodal modulator 2|pM5 protein 2|pM5 protein, centromeric copy 20121230 -9606 283847 CCDC79 - - HGNC:26675|Ensembl:ENSG00000249961|HPRD:08197|Vega:OTTHUMG00000133562 16 16q22.1 coiled-coil domain containing 79 protein-coding CCDC79 coiled-coil domain containing 79 O coiled-coil domain-containing protein 79 20121230 -9606 283848 CES4A UNQ440/PRO873 CES6|CES8 HGNC:26741|Ensembl:ENSG00000172824|HPRD:07116|Vega:OTTHUMG00000167866 16 16q22.1 carboxylesterase 4A protein-coding CES4A carboxylesterase 4A O carboxylesterase 6|carboxylesterase 8 (putative) 20121230 -9606 283849 EXOC3L1 - EXOC3L HGNC:27540|MIM:614117|Ensembl:ENSG00000179044|HPRD:14148|Vega:OTTHUMG00000137508 16 16q22.1 exocyst complex component 3-like 1 protein-coding EXOC3L1 exocyst complex component 3-like 1 O exocyst complex component 3-like protein|protein Jiangli 20121230 -9606 283854 LOC283854 - - - 16 16q12.1 uncharacterized LOC283854 unknown - - - - 20120508 -9606 283856 LOC283856 - - - 16 16q12.2 uncharacterized LOC283856 miscRNA - - - - 20121230 -9606 283860 LINC00304 - C16orf81|NCRNA00304 HGNC:26713|HPRD:08209 16 16q24.3 long intergenic non-protein coding RNA 304 miscRNA LINC00304 long intergenic non-protein coding RNA 304 O - 20121230 -9606 283861 LOC283861 - - - 16 16q24.3 uncharacterized LOC283861 unknown - - - - 20120508 -9606 283867 LOC283867 - - - 16 16q21 uncharacterized LOC283867 miscRNA - - - - 20121230 -9606 283869 NPW - L8|L8C|PPL8|PPNPW HGNC:30509|MIM:607997|Ensembl:ENSG00000183971|Vega:OTTHUMG00000176914 16 16p13.3 neuropeptide W protein-coding NPW neuropeptide W O hPPL8|preproprotein L8 20121230 -9606 283870 BRICD5 - C16orf79 HGNC:28309|Ensembl:ENSG00000182685|HPRD:14482|Vega:OTTHUMG00000128831 16 16p13.3 BRICHOS domain containing 5 protein-coding BRICD5 BRICHOS domain containing 5 O BRICHOS domain-containing protein C16orf79|chromosome 16 open reading frame 79 20121230 -9606 283871 PGP - - HGNC:8909|MIM:172280|Ensembl:ENSG00000184207|Vega:OTTHUMG00000177047 16 16p13.3 phosphoglycolate phosphatase protein-coding PGP phosphoglycolate phosphatase O PGPase 20121230 -9606 283875 LINC00514 - - HGNC:27549 16 16p13.3 long intergenic non-protein coding RNA 514 miscRNA LINC00514 long intergenic non-protein coding RNA 514 O - 20121230 -9606 283876 FLJ39639 - - - 16 16p13.3 uncharacterized protein FLJ39639 miscRNA - - - - 20121230 -9606 283887 LOC283887 - - - 16 16p12.1 uncharacterized LOC283887 unknown - - - - 20121230 -9606 283888 IL21R-AS1 - - HGNC:27551 16 16p12.2 IL21R antisense RNA 1 miscRNA IL21R-AS1 IL21R antisense RNA 1 O - 20121230 -9606 283897 C16orf54 hCG_1644884 - HGNC:26649|Ensembl:ENSG00000185905|HPRD:08183|Vega:OTTHUMG00000132116 16 16p11.2 chromosome 16 open reading frame 54 protein-coding C16orf54 chromosome 16 open reading frame 54 O transmembrane protein C16orf54 20121230 -9606 283899 INO80E - CCDC95 HGNC:26905|Ensembl:ENSG00000169592|HPRD:08816|Vega:OTTHUMG00000132114 16 16p11.2 INO80 complex subunit E protein-coding INO80E INO80 complex subunit E O coiled-coil domain containing 95|coiled-coil domain-containing protein 95 20121230 -9606 283902 HTA - - - 16 16q22.3 uncharacterized LOC283902 miscRNA - - - - 20121230 -9606 283911 LOC283911 - - - 16 16p11.2 uncharacterized LOC283911 protein-coding - - - - 20120508 -9606 283914 LOC283914 - - - 16 16p11.2-p11.1 uncharacterized LOC283914 miscRNA - - - - 20121230 -9606 283922 LOC283922 - - - 16 16q23.1 pyruvate dehydrogenase phosphatase regulatory subunit pseudogene pseudo - - - - 20121230 -9606 283927 NUDT7 - - HGNC:8054|MIM:609231|Ensembl:ENSG00000140876|Vega:OTTHUMG00000176808 16 16q23.1 nudix (nucleoside diphosphate linked moiety X)-type motif 7 protein-coding NUDT7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 O peroxisomal coenzyme A diphosphatase NUDT7 20121230 -9606 283932 FBXL19-AS1 - NCRNA00095 HGNC:27557|HPRD:14149 16 16p11.2 FBXL19 antisense RNA 1 (head to head) miscRNA FBXL19-AS1 FBXL19 antisense RNA 1 (head to head) O - 20121230 -9606 283933 ZNF843 - - HGNC:28710|Ensembl:ENSG00000176723|Vega:OTTHUMG00000176616 16 16p11.2 zinc finger protein 843 protein-coding ZNF843 zinc finger protein 843 O - 20121230 -9606 283948 NHLRC4 - - HGNC:26700|Ensembl:ENSG00000257108|HPRD:11681|Vega:OTTHUMG00000047857 16 16p13.3 NHL repeat containing 4 protein-coding NHLRC4 NHL repeat containing 4 O NHL-repeat-containing protein 4 20121230 -9606 283951 C16orf91 - CCSMST1|gs103 HGNC:27558|Ensembl:ENSG00000174109|HPRD:17332 16 16p13.3 chromosome 16 open reading frame 91 protein-coding C16orf91 chromosome 16 open reading frame 91 O cattle cerebrum and skeletal muscle-specific protein 1 family member|protein CCSMST1 20121230 -9606 283953 TMEM114 hCG_15406 - HGNC:33227|MIM:611579|Ensembl:ENSG00000232258|Vega:OTTHUMG00000172868 16 16p13.2 transmembrane protein 114 protein-coding TMEM114 transmembrane protein 114 O - 20121230 -9606 283955 PKD1P2 - HG2 HGNC:30066 16 16p13.11 polycystic kidney disease 1 (autosomal dominant) pseudogene 2 pseudo PKD1P2 polycystic kidney disease 1 (autosomal dominant) pseudogene 2 O - 20121230 -9606 283970 PDXDC2P - PDXDC2 HGNC:27559 16 16q22.1 pyridoxal-dependent decarboxylase domain containing 2, pseudogene pseudo PDXDC2P pyridoxal-dependent decarboxylase domain containing 2, pseudogene O - 20121230 -9606 283971 CLEC18C - MRCL|MRCL3 HGNC:28538|Ensembl:ENSG00000157335|HPRD:14587|Vega:OTTHUMG00000176982 16 16q22.1 C-type lectin domain family 18, member C protein-coding CLEC18C C-type lectin domain family 18, member C O C-type lectin domain family 18 member C|mannose receptor-like 3|mannose receptor-like protein 3 20121230 -9606 283981 LINC00685 - CXYorf10|NCRNA00107|PPP2R3B-AS1 HGNC:27560 X|Y Xp22.33; Yp11.3 long intergenic non-protein coding RNA 685 miscRNA LINC00685 long intergenic non-protein coding RNA 685 O - 20121230 -9606 283982 LINC00469 - C17orf54 HGNC:26863|HPRD:08277 17 17q25.1 long intergenic non-protein coding RNA 469 miscRNA LINC00469 long intergenic non-protein coding RNA 469 O - 20121230 -9606 283985 FADS6 FP18279 - HGNC:30459|Ensembl:ENSG00000172782|HPRD:13285|Vega:OTTHUMG00000179188 17 17q25.1 fatty acid desaturase domain family, member 6 protein-coding FADS6 fatty acid desaturase domain family, member 6 O fatty acid desaturase 6 20121230 -9606 283987 HID1 - C17orf28|DMC1|HID-1 HGNC:15736|MIM:605752|Ensembl:ENSG00000167861|HPRD:05766|Vega:OTTHUMG00000166490 17 17q25.1 HID1 domain containing protein-coding HID1 HID1 domain containing O UPF0663 transmembrane protein C17orf28|down-regulated in multiple cancers 1|downregulated in multiple cancer 1|protein hid-1 homolog 20121230 -9606 283989 TSEN54 - PCH2A|PCH4|SEN54L|sen54 HGNC:27561|MIM:608755|Ensembl:ENSG00000182173|HPRD:12291|Vega:OTTHUMG00000179684 17 17q25.1 tRNA splicing endonuclease 54 homolog (S. cerevisiae) protein-coding TSEN54 tRNA splicing endonuclease 54 homolog (S. cerevisiae) O SEN54 homolog|hsSen54|tRNA-intron endonuclease Sen54|tRNA-splicing endonuclease subunit Sen54 20121230 -9606 283991 UBALD2 - FAM100B HGNC:28438|Ensembl:ENSG00000185262|HPRD:14533|Vega:OTTHUMG00000132666 17 17q25.1 UBA-like domain containing 2 protein-coding UBALD2 UBA-like domain containing 2 O family with sequence similarity 100, member B|protein FAM100B 20121230 -9606 283994 C17orf52 - - HGNC:27562 17 17q25.2 chromosome 17 open reading frame 52 unknown C17orf52 chromosome 17 open reading frame 52 O - 20120508 -9606 283999 TMEM235 - ARGM1 HGNC:27563|Ensembl:ENSG00000204278|Vega:OTTHUMG00000170345 17 17q25.3 transmembrane protein 235 protein-coding TMEM235 transmembrane protein 235 O transmembrane protein ENSP00000364084 20121230 -9606 284001 CCDC57 - - HGNC:27564|Ensembl:ENSG00000176155|HPRD:08041|HPRD:14150|Vega:OTTHUMG00000140396 17 17q25.3 coiled-coil domain containing 57 protein-coding CCDC57 coiled-coil domain containing 57 O coiled-coil domain-containing protein 57 20121230 -9606 284004 HEXDC - - HGNC:26307|Ensembl:ENSG00000169660|HPRD:08677|Vega:OTTHUMG00000178836 17 17q25.3 hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing protein-coding HEXDC hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing O N-acetyl-beta-galactosaminidase|beta-N-acetylhexosaminidase|beta-hexosaminidase D|hexosaminidase D|hexosaminidase domain-containing protein 20121230 -9606 284009 LOC284009 - - HPRD:18767 17 17p13.3 uncharacterized LOC284009 miscRNA - - - - 20121230 -9606 284013 VMO1 UNQ6350/PRO21055 ERGA6350|PRO21055 HGNC:30387|Ensembl:ENSG00000182853|HPRD:17333|Vega:OTTHUMG00000177898 17 17p13.2 vitelline membrane outer layer 1 homolog (chicken) protein-coding VMO1 vitelline membrane outer layer 1 homolog (chicken) O vitelline membrane outer layer protein 1 homolog 20121230 -9606 284014 LOC284014 - - - 17 17p13.3 uncharacterized LOC284014 unknown - - - - 20121209 -9606 284018 C17orf58 - - HGNC:27568|Ensembl:ENSG00000186665|HPRD:14151|Vega:OTTHUMG00000179782 17 17q24.2 chromosome 17 open reading frame 58 protein-coding C17orf58 chromosome 17 open reading frame 58 O UPF0450 protein C17orf58 20121230 -9606 284021 MILR1 - Allergin-1|C17orf60|MCA-32|MCA32 HGNC:27570 17 17q23.3 mast cell immunoglobulin-like receptor 1 protein-coding MILR1 mast cell immunoglobulin-like receptor 1 O ALLERGIN-1L|ALLERGIN-1S1|allergin-1|allergy inhibitory receptor 1|mast cell antigen 32|probable mast cell antigen 32 homolog 20121230 -9606 284023 LOC284023 - - - 17 17p13.1 uncharacterized LOC284023 miscRNA - - - - 20121230 -9606 284029 LINC00324 - C17orf44|NCRNA00324 HGNC:26628|HPRD:08755 17 17p13.1 long intergenic non-protein coding RNA 324 miscRNA LINC00324 long intergenic non-protein coding RNA 324 O - 20121230 -9606 284034 LINC00670 - - HGNC:44338|HPRD:08176 17 17p12 long intergenic non-protein coding RNA 670 miscRNA LINC00670 long intergenic non-protein coding RNA 670 O - 20121230 -9606 284040 CDRT4 - - HGNC:14383|Ensembl:ENSG00000239704|HPRD:08208|Vega:OTTHUMG00000059070 17 17p12 CMT1A duplicated region transcript 4 protein-coding CDRT4 CMT1A duplicated region transcript 4 O CMT1A duplicated region transcript 4 protein 20121230 -9606 284047 CCDC144B - - HGNC:26704|HPRD:08777 17 17p11.2 coiled-coil domain containing 144B (pseudogene) pseudo CCDC144B coiled-coil domain containing 144B (pseudogene) O - 20121230 -9606 284048 LOC284048 - - - 17 17p11.2 FLJ11800 related gene protein-coding - - - - 20100404 -9606 284058 KANSL1 - CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1 HGNC:24565|MIM:612452|Ensembl:ENSG00000120071|HPRD:11254|Vega:OTTHUMG00000178026 17 17q21.31 KAT8 regulatory NSL complex subunit 1 protein-coding KANSL1 KAT8 regulatory NSL complex subunit 1 O MLL1/MLL complex subunit KANSL1|MSL1 homolog 1|NSL complex protein NSL1|centromere protein 36|male-specific lethal 1 homolog|non-specific lethal 1 homolog 20121230 -9606 284064 RPL29P31 - RPL29_11_1549 HGNC:35944 17 17q21.31 ribosomal protein L29 pseudogene 31 pseudo RPL29P31 ribosomal protein L29 pseudogene 31 O - 20121230 -9606 284067 C17orf105 - - HGNC:37241|Ensembl:ENSG00000231256|Vega:OTTHUMG00000180890 17 17q21.31 chromosome 17 open reading frame 105 protein-coding C17orf105 chromosome 17 open reading frame 105 O uncharacterized protein C17orf105 20121230 -9606 284069 FAM171A2 - - HGNC:30480|Ensembl:ENSG00000161682|Vega:OTTHUMG00000132421 17 17q21.31 family with sequence similarity 171, member A2 protein-coding FAM171A2 family with sequence similarity 171, member A2 O protein FAM171A2 20121230 -9606 284071 C17orf104 - - HGNC:26670|Ensembl:ENSG00000180336|HPRD:18768|Vega:OTTHUMG00000153039 17 17q21.31 chromosome 17 open reading frame 104 protein-coding C17orf104 chromosome 17 open reading frame 104 O uncharacterized protein C17orf104 20121230 -9606 284072 LOC284072 - - - 17 17q24.3 uncharacterized LOC284072 unknown - - - - 20120511 -9606 284076 TTLL6 - TTL.6 HGNC:26664|MIM:610849|Ensembl:ENSG00000170703|HPRD:08763|Vega:OTTHUMG00000156978 17 17q21.32 tubulin tyrosine ligase-like family, member 6 protein-coding TTLL6 tubulin tyrosine ligase-like family, member 6 O tubulin polyglutamylase TTLL6|tubulin--tyrosine ligase-like protein 6 20121230 -9606 284080 LOC284080 - - - 17 17q21.33 uncharacterized LOC284080 miscRNA - - - - 20121230 -9606 284083 C17orf47 - - HGNC:26844|Ensembl:ENSG00000181013|HPRD:08269|Vega:OTTHUMG00000179244 17 17q22 chromosome 17 open reading frame 47 protein-coding C17orf47 chromosome 17 open reading frame 47 O uncharacterized protein C17orf47 20121230 -9606 284085 KRT18P55 - - HGNC:26874|HPRD:08284 17 17q11.2 keratin 18 pseudogene 55 pseudo KRT18P55 keratin 18 pseudogene 55 O - 20121230 -9606 284086 NEK8 - JCK|NEK12A|NPHP9 HGNC:13387|MIM:609799|Ensembl:ENSG00000160602|HPRD:14822|Vega:OTTHUMG00000179454 17 17q11.1 NIMA-related kinase 8 protein-coding NEK8 NIMA-related kinase 8 O NIMA (never in mitosis gene a)- related kinase 8|NIMA-family kinase NEK8|NIMA-related kinase 12a|nephrocystin 9|never in mitosis A-related kinase 8|nimA-related protein kinase 8|nima-related protein kinase 12a|serine/threonine-protein kinase Nek8|serine/thrionine-protein kinase NEK8 20121230 -9606 284098 PIGW - Gwt1 HGNC:23213|MIM:610275|Ensembl:ENSG00000184886|HPRD:11432|Vega:OTTHUMG00000133067 17 17q12 phosphatidylinositol glycan anchor biosynthesis, class W protein-coding PIGW phosphatidylinositol glycan anchor biosynthesis, class W O PIG-W|phosphatidylinositol glycan, class W|phosphatidylinositol-glycan biosynthesis class W protein 20121230 -9606 284099 C17orf78 - - HGNC:26831|Ensembl:ENSG00000167230|HPRD:08262|Vega:OTTHUMG00000180490 17 17q12 chromosome 17 open reading frame 78 protein-coding C17orf78 chromosome 17 open reading frame 78 O uncharacterized protein C17orf78 20121230 -9606 284100 LOC284100 - - - 17 17q12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene pseudo - - - - 20121230 -9606 284106 CISD3 - Miner2 HGNC:27578|MIM:611933|Ensembl:ENSG00000230055|Vega:OTTHUMG00000178426 17 17q12 CDGSH iron sulfur domain 3 protein-coding CISD3 CDGSH iron sulfur domain 3 O CDGSH iron sulfur domain-containing protein 3, mitochondrial|CDGSH iron-sulfur domain-containing protein 3, mitochondrial|mitoNEET related 2|mitoNEET-related protein 2 20121230 -9606 284108 LOC284108 - - - 17 17q21.2 uncharacterized LOC284108 protein-coding - - - - 20120508 -9606 284110 GSDMA FKSG9 GSDM|GSDM1 HGNC:13311|MIM:611218|Ensembl:ENSG00000167914|HPRD:17081|Vega:OTTHUMG00000179522 17 17q21.1 gasdermin A protein-coding GSDMA gasdermin A O gasdermin 1|gasdermin-1|gasdermin-A 20121230 -9606 284111 SLC13A5 - NACT HGNC:23089|MIM:608305|Ensembl:ENSG00000141485|HPRD:10512|Vega:OTTHUMG00000102052 17 17p13.1 solute carrier family 13 (sodium-dependent citrate transporter), member 5 protein-coding SLC13A5 solute carrier family 13 (sodium-dependent citrate transporter), member 5 O Na(+)/citrate cotransporter|sodium-coupled citrate transporter|sodium-dependent citrate transporter|solute carrier family 13 member 5|solute carrier family 13, member 5 20121230 -9606 284112 LOC284112 - - - 17 17p13.2 uncharacterized LOC284112 protein-coding - - - - 20111113 -9606 284114 TMEM102 - CBAP HGNC:26722|MIM:613936|Ensembl:ENSG00000181284|HPRD:08215|Vega:OTTHUMG00000132901 17 17p13.1 transmembrane protein 102 protein-coding TMEM102 transmembrane protein 102 O common beta-chain associated protein 20121230 -9606 284116 KRT42P - - HGNC:27581 17 17q21.2 keratin 42 pseudogene pseudo KRT42P keratin 42 pseudogene O - 20121230 -9606 284119 PTRF FKSG13 CAVIN|CAVIN1|CGL4|cavin-1 HGNC:9688|MIM:603198|Ensembl:ENSG00000177469|HPRD:04433|Vega:OTTHUMG00000180137 17 17q21.2 polymerase I and transcript release factor protein-coding PTRF polymerase I and transcript release factor O RNA polymerase I and transcript release factor|TTF-I interacting peptide 12 20121230 -9606 284123 FAM27L - - HGNC:32410|HPRD:17335 17 17p11.2 family with sequence similarity 27-like miscRNA FAM27L family with sequence similarity 27-like O - 20121230 -9606 284124 FLJ36000 - - - 17 17p11.2 uncharacterized FLJ36000 miscRNA - - - - 20121230 -9606 284129 SLC26A11 - - HGNC:14471|MIM:610117|Ensembl:ENSG00000181045|HPRD:11569|Vega:OTTHUMG00000133419 17 17q25.3 solute carrier family 26, member 11 protein-coding SLC26A11 solute carrier family 26, member 11 O sodium-independent sulfate anion transporter 20121230 -9606 284131 ENDOV - - HGNC:26640|Ensembl:ENSG00000173818|HPRD:08758|Vega:OTTHUMG00000164638 17 17q25.3 endonuclease V protein-coding ENDOV endonuclease V O - 20121230 -9606 284161 GDPD1 - GDE4 HGNC:20883|Ensembl:ENSG00000153982|HPRD:08223|Vega:OTTHUMG00000179376 17 17q22 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 O glycerophosphodiester phosphodiesterase 4|glycerophosphodiester phosphodiesterase domain-containing protein 1 20121230 -9606 284167 POLRMTP1 - POLRMTL HGNC:28865 17 17q23.2 polymerase (RNA) mitochondrial (DNA directed) pseudogene 1 pseudo POLRMTP1 polymerase (RNA) mitochondrial (DNA directed) pseudogene 1 O - 20121230 -9606 284184 C17orf89 - - HGNC:33551|Ensembl:ENSG00000224877|Vega:OTTHUMG00000177867 17 17q25.3 chromosome 17 open reading frame 89 protein-coding C17orf89 chromosome 17 open reading frame 89 O uncharacterized protein C17orf89 20121230 -9606 284185 LINC00482 - C17orf55 HGNC:26816|HPRD:08254 17 17q25.3 long intergenic non-protein coding RNA 482 miscRNA LINC00482 long intergenic non-protein coding RNA 482 O - 20121230 -9606 284186 TMEM105 - - HGNC:26794|Ensembl:ENSG00000185332|HPRD:08247|Vega:OTTHUMG00000177905 17 17q25.3 transmembrane protein 105 protein-coding TMEM105 transmembrane protein 105 O - 20121230 -9606 284187 DKFZp761P0212 - - - 17 17q25.3 uncharacterized protein DKFZp761P0212 protein-coding - - - - 20120909 -9606 284191 LOC284191 - - - 17 17p11.2 uncharacterized LOC284191 unknown - - - - 20120508 -9606 284194 LGALS9B - - HGNC:24842|Ensembl:ENSG00000170298|Vega:OTTHUMG00000130730 17 17p11.2 lectin, galactoside-binding, soluble, 9B protein-coding LGALS9B lectin, galactoside-binding, soluble, 9B O gal-9B|galectin-9 like|galectin-9 pseudogene|galectin-9-like protein A|galectin-9B 20121230 -9606 284196 LOC284196 - - - 17 17p11.2 keratin pseudogene pseudo - - - - 20121209 -9606 284203 RNASEH1P1 - RNASEH1|RNASEH1P|RNH1 HGNC:10049 17 17p11.2 ribonuclease H1 pseudogene 1 pseudo RNASEH1P1 ribonuclease H1 pseudogene 1 O - 20121230 -9606 284207 METRNL - - HGNC:27584|Ensembl:ENSG00000176845|HPRD:11255|Vega:OTTHUMG00000177771 17 17q25.3 meteorin, glial cell differentiation regulator-like protein-coding METRNL meteorin, glial cell differentiation regulator-like O meteorin-like protein 20121230 -9606 284215 DLGAP1-AS5 - - HGNC:27586 18 18p11.31 DLGAP1 antisense RNA 5 miscRNA DLGAP1-AS5 DLGAP1 antisense RNA 5 O - 20121230 -9606 284217 LAMA1 - LAMA|S-LAM-alpha HGNC:6481|MIM:150320|Ensembl:ENSG00000101680|HPRD:01033|Vega:OTTHUMG00000133478 18 18p11.3 laminin, alpha 1 protein-coding LAMA1 laminin, alpha 1 O S-LAM alpha|S-laminin subunit alpha|laminin A chain|laminin subunit alpha-1|laminin-3 subunit alpha 20121230 -9606 284219 LOC284219 - - - 18 18p11.22 uncharacterized LOC284219 unknown - - - - 20120508 -9606 284230 RPL36AP49 - RPL36A_23_1584 HGNC:36274 18 18p11.21 ribosomal protein L36a pseudogene 49 pseudo RPL36AP49 ribosomal protein L36a pseudogene 49 O - 20121230 -9606 284232 ANKRD20A9P - - HGNC:42023 13 13q11 ankyrin repeat domain 20 family, member A9, pseudogene pseudo ANKRD20A9P ankyrin repeat domain 20 family, member A9, pseudogene O - 20121230 -9606 284233 CYP4F35P - - HGNC:39954 18 18p11.21 cytochrome P450, family 4, subfamily F, polypeptide 35, pseudogene pseudo CYP4F35P cytochrome P450, family 4, subfamily F, polypeptide 35, pseudogene O - 20121230 -9606 284240 LOC284240 - - - 18 18q23 uncharacterized LOC284240 unknown - - - - 20120508 -9606 284241 FLJ25715 - - HPRD:08074 18 18q23 uncharacterized protein FLJ25715 unknown - - - - 20121230 -9606 284242 LOC284242 - - - 18 18q12.1 uncharacterized LOC284242 unknown - - - - 20120511 -9606 284244 LOC284244 - - - 18 18q12.1 uncharacterized LOC284244 unknown - - - - 20120508 -9606 284252 KCTD1 hCG_38480 C18orf5 HGNC:18249|MIM:613420|Ensembl:ENSG00000134504|HPRD:11059|Vega:OTTHUMG00000131947 18 18q11.2 potassium channel tetramerisation domain containing 1 protein-coding KCTD1 potassium channel tetramerisation domain containing 1 O BTB/POZ domain-containing protein KCTD1|potassium channel tetramerization domain-containing protein 1 20121230 -9606 284254 DYNAP - C18orf26 HGNC:26808|Ensembl:ENSG00000178690|HPRD:08251|Vega:OTTHUMG00000132709 18 18q21.2 dynactin associated protein protein-coding DYNAP dynactin associated protein O dynactin-associated protein|uncharacterized protein C18orf26 20121230 -9606 284257 BOD1L2 - BOD1P|FAM44C HGNC:28505|Ensembl:ENSG00000228075|Vega:OTTHUMG00000180124 18 18q21.31 biorientation of chromosomes in cell division 1-like 2 protein-coding BOD1L2 biorientation of chromosomes in cell division 1-like 2 O biorientation of chromosomes in cell division 1 pseudogene|biorientation of chromosomes in cell division protein 1-like 2|family with sequence similarity 44, member C|putative biorientation of chromosomes in cell division protein 1 pseudogene|putative biorientation of chromosomes in cell division protein 1-like 2|putative protein FAM44C 20121230 -9606 284260 LOC284260 hCG_1815375 - - 18 18q12.3 uncharacterized LOC284260 miscRNA - - - - 20121230 -9606 284263 LOC284263 - - - 18 18q21.1 uncharacterized LOC284263 unknown - - - - 20120508 -9606 284266 SIGLEC15 - CD33L3|HsT1361|SIGLEC-15 HGNC:27596|Ensembl:ENSG00000197046|HPRD:13011|Vega:OTTHUMG00000170870 18 18q12.3 sialic acid binding Ig-like lectin 15 protein-coding SIGLEC15 sialic acid binding Ig-like lectin 15 O CD33 antigen-like 3|CD33 molecule-like 3|sialic acid-binding Ig-like lectin 15 20121230 -9606 284269 LOC284269 - - - 18 18p11.21 chromosome 9 open reading frame 86 pseudogene 1 pseudo - - - - 20121230 -9606 284273 ZADH2 - - HGNC:28697|Ensembl:ENSG00000180011|HPRD:15685|Vega:OTTHUMG00000132858 18 18q22.3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding ZADH2 zinc binding alcohol dehydrogenase domain containing 2 O zinc-binding alcohol dehydrogenase domain-containing protein 2 20121230 -9606 284274 C18orf62 - - HGNC:27598|Ensembl:ENSG00000206026|HPRD:18769|Vega:OTTHUMG00000179126 18 18q23 chromosome 18 open reading frame 62 protein-coding C18orf62 chromosome 18 open reading frame 62 O putative uncharacterized protein C18orf62 20121230 -9606 284276 LOC284276 - - - 18 18q23 uncharacterized LOC284276 miscRNA - - - - 20121230 -9606 284288 RSL24D1P11 - - HGNC:37881 18 18q21.31 ribosomal L24 domain containing 1 pseudogene 11 pseudo RSL24D1P11 ribosomal L24 domain containing 1 pseudogene 11 O - 20121230 -9606 284293 HMSD - ACC-6|C18orf53|HSMD-v HGNC:23037|MIM:612086|Ensembl:ENSG00000221887|Vega:OTTHUMG00000060593 18 18q22.1 histocompatibility (minor) serpin domain containing protein-coding HMSD histocompatibility (minor) serpin domain containing O minor histocompatibility protein HMSD|serpin-like protein HMSD 20121230 -9606 284294 LOC284294 - - - 18 18q22.1 uncharacterized LOC284294 miscRNA - - - - 20121230 -9606 284297 SSC5D - - HGNC:26641|Ensembl:ENSG00000179954|HPRD:11444|Vega:OTTHUMG00000180855 19 19q13.42 scavenger receptor cysteine rich domain containing (5 domains) protein-coding SSC5D scavenger receptor cysteine rich domain containing (5 domains) O scavenger receptor cysteine-rich glycoprotein|soluble scavenger protein with 5 SRCR domains|soluble scavenger receptor cysteine-rich domain-containing protein SSC5D|soluble scavenger with 5 domains 20121230 -9606 284306 ZNF547 - - HGNC:26432|Ensembl:ENSG00000152433|HPRD:15831 19 19q13.43 zinc finger protein 547 protein-coding ZNF547 zinc finger protein 547 O - 20121230 -9606 284307 ZIK1 - ZNF762 HGNC:33104|Ensembl:ENSG00000171649|HPRD:18321 19 19q13.43 zinc finger protein interacting with K protein 1 homolog (mouse) protein-coding ZIK1 zinc finger protein interacting with K protein 1 homolog (mouse) O zinc finger protein 762|zinc finger protein interacting with ribonucleoprotein K 20121230 -9606 284309 ZNF776 - - HGNC:26765|Ensembl:ENSG00000152443|HPRD:08237|Vega:OTTHUMG00000156943 19 19q13.43 zinc finger protein 776 protein-coding ZNF776 zinc finger protein 776 O - 20121230 -9606 284312 ZSCAN1 - MZF-1|ZNF915 HGNC:23712|Ensembl:ENSG00000152467|HPRD:15897 19 19q13.43 zinc finger and SCAN domain containing 1 protein-coding ZSCAN1 zinc finger and SCAN domain containing 1 O zinc finger and SCAN domain-containing protein 1|zinc finger with SCAN domain 1 20121230 -9606 284323 ZNF780A - ZNF780 HGNC:27603|Ensembl:ENSG00000197782|HPRD:17336|Vega:OTTHUMG00000155119 19 19q13.2 zinc finger protein 780A protein-coding ZNF780A zinc finger protein 780A O - 20121230 -9606 284325 C19orf54 - - HGNC:24758|Ensembl:ENSG00000188493|HPRD:13449|Vega:OTTHUMG00000150174 19 19q13.2 chromosome 19 open reading frame 54 protein-coding C19orf54 chromosome 19 open reading frame 54 O UPF0692 protein C19orf54 20121230 -9606 284336 LOC284336 - - - 19 19q13.31 uncharacterized LOC284336 protein-coding - - - - 20120126 -9606 284338 PRR19 - - HGNC:33728|Ensembl:ENSG00000188368|HPRD:14703 19 19q13.2 proline rich 19 protein-coding PRR19 proline rich 19 O proline-rich protein 19 20121230 -9606 284339 TMEM145 - - HGNC:26912|Ensembl:ENSG00000167619|HPRD:08300 19 19q13.2 transmembrane protein 145 protein-coding TMEM145 transmembrane protein 145 O - 20121230 -9606 284340 CXCL17 UNQ473/PRO842 DMC|Dcip1|UNQ473|VCC-1|VCC1 HGNC:19232|MIM:611387|Ensembl:ENSG00000189377|HPRD:18264 19 19q13.2 chemokine (C-X-C motif) ligand 17 protein-coding CXCL17 chemokine (C-X-C motif) ligand 17 O C-X-C motif chemokine 17|VEGF co-regulated chemokine 1|dendritic cell and monocyte chemokine-like protein 20121230 -9606 284344 LOC284344 - - - 19 19q13.32 uncharacterized LOC284344 miscRNA - - - - 20121230 -9606 284346 ZNF575 - - HGNC:27606|Ensembl:ENSG00000176472|HPRD:15854 19 19q13.31 zinc finger protein 575 protein-coding ZNF575 zinc finger protein 575 O - 20121230 -9606 284348 LYPD5 UNQ1908/PRO4356 PRO4356 HGNC:26397|Ensembl:ENSG00000159871|HPRD:08084 19 19q13.31 LY6/PLAUR domain containing 5 protein-coding LYPD5 LY6/PLAUR domain containing 5 O ly6/PLAUR domain-containing protein 5|metastasis-associated protein 20121230 -9606 284349 ZNF283 - HZF41 HGNC:13077|Ensembl:ENSG00000167637|Vega:OTTHUMG00000182186 19 19q13.31 zinc finger protein 283 protein-coding ZNF283 zinc finger protein 283 O HZF19|zinc finger protein 41|zinc finger protein HZF19 20121230 -9606 284352 PPP1R37 - LRRC68 HGNC:27607|Ensembl:ENSG00000104866|Vega:OTTHUMG00000168143 19 19q13.32 protein phosphatase 1, regulatory subunit 37 protein-coding PPP1R37 protein phosphatase 1, regulatory subunit 37 O leucine rich repeat containing 68|leucine-rich repeat-containing protein 68|protein phosphatase 1 regulatory subunit 37 20121230 -9606 284353 NKPD1 - - HGNC:24739|Ensembl:ENSG00000179846|HPRD:11393 19 19q13.32 NTPase, KAP family P-loop domain containing 1 protein-coding NKPD1 NTPase, KAP family P-loop domain containing 1 O NTPase KAP family P-loop domain-containing protein 1 20121230 -9606 284355 TPRX1 - TPRX HGNC:32174|MIM:611166|Ensembl:ENSG00000178928|HPRD:13447|Vega:OTTHUMG00000170628 19 19q13.33 tetra-peptide repeat homeobox 1 protein-coding TPRX1 tetra-peptide repeat homeobox 1 O CRX like homeobox 2|tetra-peptide repeat homeobox protein 1 20121230 -9606 284358 MAMSTR - MASTR HGNC:26689|MIM:610349|Ensembl:ENSG00000176909|HPRD:08204 19 19q13.33 MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding MAMSTR MEF2 activating motif and SAP domain containing transcriptional regulator O MEF2-activating SAP transcriptional regulator|MEF2-activating SAP transcriptional regulatory protein|MEF2-activating motif and SAP domain-containing transcriptional regulator|likely ortholog of MEF2-activating SAP transcriptional regulator 20121230 -9606 284359 IZUMO1 - IZUMO HGNC:28539|MIM:609278|Ensembl:ENSG00000182264|HPRD:14589 19 19q13.33 izumo sperm-egg fusion 1 protein-coding IZUMO1 izumo sperm-egg fusion 1 O OBF|izumo sperm-egg fusion protein 1|oocyte binding/fusion factor|sperm-specific protein Izumo 20121230 -9606 284361 EMC10 UNQ764/PRO1556 C19orf63|HSM1|HSS1|INM02 HGNC:27609|MIM:614545|Ensembl:ENSG00000161671|HPRD:14153 19 19q13.33 ER membrane protein complex subunit 10 protein-coding EMC10 ER membrane protein complex subunit 10 O UPF0510 protein INM02|hematopoietic signal peptide-containing membrane domain-containing 1|hematopoietic signal peptide-containing membrane domain-containing protein 1|hematopoietic signal peptide-containing secreted 1 20121230 -9606 284365 MGC45922 - - - 19 19q13.33 uncharacterized LOC284365 miscRNA - - - - 20121230 -9606 284366 KLK9 - KLK-L3|KLKL3 HGNC:6370|MIM:605504|Ensembl:ENSG00000213022|HPRD:05692 19 19q13.41 kallikrein-related peptidase 9 protein-coding KLK9 kallikrein-related peptidase 9 O kallikrein-9|kallikrein-like protein 3 20121230 -9606 284367 SIGLEC17P - HSPC078|SIGLECP2|SIGLECP3 HGNC:15604 19 19q13.3 sialic acid binding Ig-like lectin 17, pseudogene pseudo SIGLEC17P sialic acid binding Ig-like lectin 17, pseudogene O - 20121230 -9606 284369 SIGLECL1 - C19orf75 HGNC:26856|Ensembl:ENSG00000179213|HPRD:08275 19 19q13.41 SIGLEC family like 1 protein-coding SIGLECL1 SIGLEC family like 1 O SIGLEC family-like protein 1 20121230 -9606 284370 ZNF615 - - HGNC:24740|Ensembl:ENSG00000197619|HPRD:15875 19 19q13.41 zinc finger protein 615 protein-coding ZNF615 zinc finger protein 615 O - 20121230 -9606 284371 ZNF841 - - HGNC:27611|Ensembl:ENSG00000197608 19 19q13.41 zinc finger protein 841 protein-coding ZNF841 zinc finger protein 841 O - 20121230 -9606 284373 LOC284373 - - - 19 19q13.41 uncharacterized LOC284373 miscRNA - - - - 20121018 -9606 284379 LOC284379 - - - 19 19q13.42 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene pseudo - - - - 20121230 -9606 284382 ACTL9 HSD21 - HGNC:28494|Ensembl:ENSG00000181786|HPRD:14562 19 19p13.2 actin-like 9 protein-coding ACTL9 actin-like 9 O actin-like protein 9 20121230 -9606 284383 OR2Z1 - OR19-4|OR2Z2 HGNC:15391|Ensembl:ENSG00000181733|HPRD:17717 19 19p13.2 olfactory receptor, family 2, subfamily Z, member 1 protein-coding OR2Z1 olfactory receptor, family 2, subfamily Z, member 1 O olfactory receptor 2Z1|olfactory receptor 2Z2|olfactory receptor OR19-4|olfactory receptor, family 2, subfamily Z, member 2 20121230 -9606 284385 LOC284385 - - Ensembl:ENSG00000267106|Vega:OTTHUMG00000180135 19 19p13.2 uncharacterized LOC284385 protein-coding - - - uncharacterized protein LOC284385 20121230 -9606 284390 ZNF763 - ZNF|ZNF440L HGNC:27614|Ensembl:ENSG00000197054|HPRD:18509|Vega:OTTHUMG00000156430 19 19p13.2 zinc finger protein 763 protein-coding ZNF763 zinc finger protein 763 O DNA-binding protein|zinc finger protein 440 like 20121230 -9606 284391 ZNF844 - - HGNC:25932|Ensembl:ENSG00000223547|Vega:OTTHUMG00000156405 19 19p13.2 zinc finger protein 844 protein-coding ZNF844 zinc finger protein 844 O - 20121230 -9606 284393 RPL10P16 - RPL10_6_1628 HGNC:36882 19 19p13.2 ribosomal protein L10 pseudogene 16 pseudo RPL10P16 ribosomal protein L10 pseudogene 16 O - 20121230 -9606 284395 LOC284395 - - - 19 19q12 uncharacterized LOC284395 miscRNA - - - - 20121230 -9606 284402 SCGB2B2 - SCGB4A2|SCGBL HGNC:27616|Ensembl:ENSG00000205209|HPRD:18770 19 19q13.11 secretoglobin, family 2B, member 2 protein-coding SCGB2B2 secretoglobin, family 2B, member 2 O secretoglobin family 2B member 2|secretoglobin-like protein 20121230 -9606 284403 WDR62 - C19orf14|MCPH2 HGNC:24502|MIM:613583|Ensembl:ENSG00000075702|HPRD:10721|Vega:OTTHUMG00000048139 19 19q13.12 WD repeat domain 62 protein-coding WDR62 WD repeat domain 62 O WD repeat-containing protein 62|microcephaly, primary autosomal recessive 2 20121230 -9606 284406 ZFP82 - ZNF545 HGNC:28682|Ensembl:ENSG00000181007|HPRD:11725|Vega:OTTHUMG00000048146 19 19q13.12 ZFP82 zinc finger protein protein-coding ZFP82 ZFP82 zinc finger protein O zfp-82|zinc finger protein 545|zinc finger protein 82 homolog|zinc finger protein 85 20121230 -9606 284408 ZNF790-AS1 - - HGNC:27617 19 19q13.13 ZNF790 antisense RNA 1 miscRNA ZNF790-AS1 ZNF790 antisense RNA 1 O - 20121230 -9606 284412 LOC284412 - - - 19 19q13.12 uncharacterized LOC284412 miscRNA - - - - 20121230 -9606 284415 VSTM1 UNQ3033/PRO9835 SIRL1|UNQ3033 HGNC:29455|Ensembl:ENSG00000189068|HPRD:15615|Vega:OTTHUMG00000064906 19 19q13.42 V-set and transmembrane domain containing 1 protein-coding VSTM1 V-set and transmembrane domain containing 1 O LAIR homolog|OSCAR-like transcript-1|V-set and transmembrane domain-containing protein 1|signal inhibitory receptor on leukocytes-1 20121230 -9606 284417 TMEM150B - TMEM224 HGNC:34415|Ensembl:ENSG00000180061|Vega:OTTHUMG00000180709 19 19q13.42 transmembrane protein 150B protein-coding TMEM150B transmembrane protein 150B O hCG1651476|transmembrane protein 224|transmembrane protein LOC284417 20121230 -9606 284418 FAM71E2 - C19orf16 HGNC:25278|Ensembl:ENSG00000180043|Vega:OTTHUMG00000170357 19 19q13.42 family with sequence similarity 71, member E2 protein-coding FAM71E2 family with sequence similarity 71, member E2 O protein FAM71E2|putative protein FAM71E2 20121230 -9606 284422 C19orf77 HSPC323 - HGNC:37244|Ensembl:ENSG00000095932|Vega:OTTHUMG00000180761 19 19p13.3 chromosome 19 open reading frame 77 protein-coding C19orf77 chromosome 19 open reading frame 77 O transmembrane protein C19orf77|transmembrane protein HSPC323 20121230 -9606 284424 MIR7-3HG - C19orf30|LINC00306|NCRNA00306|PGSF1 HGNC:30049|HPRD:16628 19 19p13.3 MIR7-3 host gene (non-protein coding) miscRNA MIR7-3HG MIR7-3 host gene (non-protein coding) O - 20121230 -9606 284427 SLC25A41 - APC4 HGNC:28533|MIM:610822|Ensembl:ENSG00000181240|HPRD:14584 19 19p13.3 solute carrier family 25, member 41 protein-coding SLC25A41 solute carrier family 25, member 41 O solute carrier family 25 member 41 20121230 -9606 284428 MBD3L5 - - HGNC:37204|Ensembl:ENSG00000237247 19 19p13.2 methyl-CpG binding domain protein 3-like 5 protein-coding MBD3L5 methyl-CpG binding domain protein 3-like 5 O MBD3-like 5|MBD3-like protein 5|putative methyl-CpG-binding domain protein 3-like 5 20121230 -9606 284433 OR10H5 - OR19-25|OR19-26 HGNC:15389|Ensembl:ENSG00000172519|HPRD:17670|Vega:OTTHUMG00000182284 19 19p13.12 olfactory receptor, family 10, subfamily H, member 5 protein-coding OR10H5 olfactory receptor, family 10, subfamily H, member 5 O olfactory receptor 10H5|olfactory receptor OR19-25|olfactory receptor OR19-26 20121230 -9606 284434 NWD1 - - HGNC:27619|Ensembl:ENSG00000188039|HPRD:17337|Vega:OTTHUMG00000164507 19 19p13.11 NACHT and WD repeat domain containing 1 protein-coding NWD1 NACHT and WD repeat domain containing 1 O NACHT and WD repeat domain-containing protein 1 20121230 -9606 284439 SLC25A42 - - HGNC:28380|MIM:610823|Ensembl:ENSG00000181035|HPRD:17523 19 19p13.11 solute carrier family 25, member 42 protein-coding SLC25A42 solute carrier family 25, member 42 O mitochondrial coenzyme A transporter SLC25A42 20121230 -9606 284440 LINC00663 - - HGNC:28609 19 19p13.11 long intergenic non-protein coding RNA 663 miscRNA LINC00663 long intergenic non-protein coding RNA 663 O - 20121230 -9606 284441 LOC284441 - - - 19 19p12 actin-related protein 2 pseudogene pseudo - - - - 20121230 -9606 284443 ZNF493 - - HGNC:23708|Ensembl:ENSG00000196268|HPRD:10043|HPRD:15804|Vega:OTTHUMG00000141297 19 19p12 zinc finger protein 493 protein-coding ZNF493 zinc finger protein 493 O - 20121230 -9606 284451 ODF3L2 - C19orf19 HGNC:26841|Ensembl:ENSG00000181781|HPRD:12700|Vega:OTTHUMG00000180547 19 19p13.3 outer dense fiber of sperm tails 3-like 2 protein-coding ODF3L2 outer dense fiber of sperm tails 3-like 2 O outer dense fiber protein 3-like protein 2 20121230 -9606 284454 LOC284454 - - - 19 19p13.13 uncharacterized LOC284454 miscRNA - - - - 20121230 -9606 284459 HKR1 - ZNF875 HGNC:4928|MIM:165250|Ensembl:ENSG00000181666|HPRD:01314|Vega:OTTHUMG00000181937 19 19q13.12 HKR1, GLI-Kruppel zinc finger family member protein-coding HKR1 HKR1, GLI-Kruppel zinc finger family member O GLI-Kruppel family member HKR1|Krueppel-related zinc finger protein 1|oncogene HKR1|zinc finger protein 875 20121230 -9606 284467 FAM19A3 RP11-426L16.6 TAFA-3|TAFA3 HGNC:21590|Ensembl:ENSG00000184599|HPRD:16877|Vega:OTTHUMG00000012020 1 1p13.2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 protein-coding FAM19A3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 O chemokine-like protein TAFA-3|protein FAM19A3 20121230 -9606 284485 RIIAD1 - C1orf230|NCRNA00166 HGNC:26686|Ensembl:ENSG00000178796|Vega:OTTHUMG00000013055 1 1q21.3 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding RIIAD1 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 O RIIa domain-containing protein 1|RIIa domain-containing protein C1orf230|RIIa domain-containing protein ENSP00000357824 20121230 -9606 284486 THEM5 RP11-139D23.1 - HGNC:26755|Ensembl:ENSG00000196407|HPRD:08233|Vega:OTTHUMG00000013070 1 1q21.3 thioesterase superfamily member 5 protein-coding THEM5 thioesterase superfamily member 5 O - 20121230 -9606 284498 C1orf167 RP11-56N19.2 - HGNC:25262 1 1p36.22 chromosome 1 open reading frame 167 protein-coding C1orf167 chromosome 1 open reading frame 167 O uncharacterized protein C1orf167 20121230 -9606 284513 LOC284513 - - - 1 1p36.13 uncharacterized LOC284513 protein-coding - - - - 20120508 -9606 284521 OR2L13 - OR2L14 HGNC:19578|Ensembl:ENSG00000196071|HPRD:17702 1 1q44 olfactory receptor, family 2, subfamily L, member 13 protein-coding OR2L13 olfactory receptor, family 2, subfamily L, member 13 O olfactory receptor 2L13|olfactory receptor 2L14|olfactory receptor, family 2, subfamily L, member 14 20121230 -9606 284525 SLC9C2 - RP3-436N22.2|SLC9A11 HGNC:28664|Ensembl:ENSG00000162753|HPRD:15398|Vega:OTTHUMG00000034800 1 1q25.1 solute carrier family 9, member C2 (putative) protein-coding SLC9C2 solute carrier family 9, member C2 (putative) O NHE-11|Na(+)/H(+) exchanger 11|sodium/hydrogen exchanger 11|solute carrier family 9|solute carrier family 9 member C2|solute carrier family 9, member 11 20121230 -9606 284532 OR14A16 - OR5AT1 HGNC:15022|Ensembl:ENSG00000196772|HPRD:15033|Vega:OTTHUMG00000040199 1 1q44 olfactory receptor, family 14, subfamily A, member 16 protein-coding OR14A16 olfactory receptor, family 14, subfamily A, member 16 O olfactory receptor 14A16|olfactory receptor 5AT1|olfactory receptor OR1-45|olfactory receptor, family 5, subfamily AT, member 1 20121230 -9606 284541 CYP4A22 RP1-18D14.1 - HGNC:20575|Ensembl:ENSG00000162365|HPRD:16776|Vega:OTTHUMG00000007845 1 1p33 cytochrome P450, family 4, subfamily A, polypeptide 22 protein-coding CYP4A22 cytochrome P450, family 4, subfamily A, polypeptide 22 O CYPIVA22|cytochrome P450 4A22|cytochrome P450 4A22K|fatty acid omega-hydroxylase|lauric acid omega-hydroxylase 20121230 -9606 284546 C1orf185 RP11-296A18.1 - HGNC:28096|Ensembl:ENSG00000204006|Vega:OTTHUMG00000008084 1 1p32.3 chromosome 1 open reading frame 185 protein-coding C1orf185 chromosome 1 open reading frame 185 O uncharacterized protein C1orf185 20121230 -9606 284551 LOC284551 - - - 1 1p35.2 uncharacterized LOC284551 miscRNA - - - - 20121230 -9606 284561 LOC284561 - - - 1 1q21.3 uncharacterized LOC284561 unknown - - - - 20121230 -9606 284565 NBPF15 - AB14 HGNC:28791|MIM:610414|Ensembl:ENSG00000243452|HPRD:14710|Vega:OTTHUMG00000013634 1 1q21.2 neuroblastoma breakpoint family, member 15 protein-coding NBPF15 neuroblastoma breakpoint family, member 15 O neuroblastoma breakpoint family member 15 20121230 -9606 284570 LOC284570 - - - 1 1q32.1 uncharacterized LOC284570 protein-coding - - - - 20120508 -9606 284573 LINC00303 - C1orf157|NCRNA00303 HGNC:26865|HPRD:08279 1 1q32.1 long intergenic non-protein coding RNA 303 miscRNA LINC00303 long intergenic non-protein coding RNA 303 O - 20121230 -9606 284576 LEMD1-AS1 - - HGNC:44132 1 1q32.1 LEMD1 antisense RNA 1 miscRNA LEMD1-AS1 LEMD1 antisense RNA 1 O - 20121230 -9606 284577 LOC284577 - - - 1 1q32.1 uncharacterized LOC284577 unknown - - - - 20120511 -9606 284578 LOC284578 - - - 1 1q32.1 uncharacterized LOC284578 miscRNA - - - - 20121230 -9606 284581 LOC284581 - - HPRD:17338 1 1q32.1 uncharacterized LOC284581 miscRNA - - - - 20121230 -9606 284593 FAM41C - - HGNC:27635 1 1p36.33 family with sequence similarity 41, member C miscRNA FAM41C family with sequence similarity 41, member C O - 20121230 -9606 284600 LOC284600 - - - 1 1p36.33 uncharacterized LOC284600 unknown - - - - 20121230 -9606 284611 FAM102B RP11-256E16.1 SYM-3B HGNC:27637|Ensembl:ENSG00000162636|HPRD:17339|Vega:OTTHUMG00000010967 1 1p13.3 family with sequence similarity 102, member B protein-coding FAM102B family with sequence similarity 102, member B O protein FAM102B|sym-3 homolog B 20121230 -9606 284612 SYPL2 UNQ6348 MG29 HGNC:27638|Ensembl:ENSG00000143028|HPRD:17478|Vega:OTTHUMG00000010969 1 1p13.3 synaptophysin-like 2 protein-coding SYPL2 synaptophysin-like 2 O mitsugumin 29|mitsugumin-29|synaptophysin-like protein 2 20121230 -9606 284613 CYB561D1 RP5-831G13.3 - HGNC:26804|Ensembl:ENSG00000174151|HPRD:09902|Vega:OTTHUMG00000011051 1 1p13.3 cytochrome b-561 domain containing 1 protein-coding CYB561D1 cytochrome b-561 domain containing 1 O cytochrome b561 domain-containing protein 1 20121230 -9606 284615 ANKRD34A - ANKRD34 HGNC:27639|Ensembl:ENSG00000181039|Vega:OTTHUMG00000013740 1 1q21.1 ankyrin repeat domain 34A protein-coding ANKRD34A ankyrin repeat domain 34A O ankyrin repeat domain 34|ankyrin repeat domain-containing protein 34A 20121230 -9606 284618 RUSC1-AS1 - C1orf104|RP11-21N7.3 HGNC:26680|HPRD:08767 1 1q22 RUSC1 antisense RNA 1 protein-coding RUSC1-AS1 RUSC1 antisense RNA 1 O RUSC1 antisense RNA 1 (non-protein coding)|RUSC1 antisense gene protein 1|putative uncharacterized protein RUSC1-AS1 20121230 -9606 284620 LOC284620 - - - 1 1q22 claudin 6 pseudogene pseudo - - - - 20121230 -9606 284628 LOC284628 - - - 1 1p36.32 uncharacterized LOC284628 unknown - - - - 20120508 -9606 284630 LOC284630 - - - 1 1p36.32 uncharacterized LOC284630 protein-coding - - - - 20120508 -9606 284632 LOC284632 - - - 1 1p36.11 uncharacterized LOC284632 miscRNA - - - - 20121230 -9606 284648 LOC284648 - - - 1 1q25.3 uncharacterized LOC284648 miscRNA - - - - 20121230 -9606 284649 SMG7-AS1 - DKFZP564C196 HGNC:24518 1 1q25.3 SMG7 antisense RNA 1 miscRNA SMG7-AS1 SMG7 antisense RNA 1 O - 20121230 -9606 284654 RSPO1 RP11-566C13.1 CRISTIN3|RSPO HGNC:21679|MIM:609595|Ensembl:ENSG00000169218|HPRD:08288|Vega:OTTHUMG00000004321 1 1p34.3 R-spondin 1 protein-coding RSPO1 R-spondin 1 O R-spondin homolog|R-spondin-1|roof plate-specific spondin-1 20121230 -9606 284656 EPHA10 - - HGNC:19987|MIM:611123|Ensembl:ENSG00000183317|HPRD:08163|Vega:OTTHUMG00000004325 1 1p34.3 EPH receptor A10 protein-coding EPHA10 EPH receptor A10 O EphA10s protein|ephrin type-A receptor 10 20121230 -9606 284661 LOC284661 - - - 1 1p36.32 uncharacterized LOC284661 miscRNA - - - - 20121230 -9606 284669 LOC284669 - - - 1 1q32.3 uncharacterized LOC284669 protein-coding - - - - 20120508 -9606 284672 PTGES3P1 hCG_2028557 PTGES3P HGNC:43824 1 1p22.2 prostaglandin E synthase 3 (cytosolic) pseudogene 1 pseudo PTGES3P1 prostaglandin E synthase 3 (cytosolic) pseudogene 1 O - 20121230 -9606 284677 C1orf204 RP11-190A12.4 - HGNC:27647|Ensembl:ENSG00000188004|Vega:OTTHUMG00000035430 1 1q23.2 chromosome 1 open reading frame 204 protein-coding C1orf204 chromosome 1 open reading frame 204 O uncharacterized protein LOC284677 20121230 -9606 284680 C1orf111 HSD20 RP11-565P22.3 HGNC:27648|Ensembl:ENSG00000171722|HPRD:14154|Vega:OTTHUMG00000031375 1 1q23.3 chromosome 1 open reading frame 111 protein-coding C1orf111 chromosome 1 open reading frame 111 O uncharacterized protein C1orf111 20121230 -9606 284685 LOC284685 - - - 1 1q24.1 Ewing sarcoma breakpoint region 1 pseudogene pseudo - - - - 20121230 -9606 284688 LOC284688 RP11-297H3.4 - - 1 1q24.2 uncharacterized LOC284688 miscRNA - - - - 20121230 -9606 284695 ZNF326 - ZAN75|ZIRD|Zfp326|dJ871E2.1 HGNC:14104|MIM:614601|Ensembl:ENSG00000162664|HPRD:15774|Vega:OTTHUMG00000010675 1 1p22.2 zinc finger protein 326 protein-coding ZNF326 zinc finger protein 326 O DBIRD complex subunit ZNF326|ZNF-protein interacting with nuclear mRNPs and DBC1|dJ871E2.1 (novel protein (ortholog of mouse zinc finger protein Zan75))|zinc finger protein interacting with mRNPs and DBC1 20121230 -9606 284697 BTBD8 - - HGNC:21019|Ensembl:ENSG00000189195|HPRD:12542|Vega:OTTHUMG00000010289 1 1p22.1 BTB (POZ) domain containing 8 protein-coding BTBD8 BTB (POZ) domain containing 8 O BTB/POZ domain-containing protein 8|double BTB/POZ domain containing protein 20121230 -9606 284702 HNRNPU-AS1 RP11-11N7.2 C1orf199|NCRNA00201 HGNC:27651 1 1q44 HNRNPU antisense RNA 1 miscRNA HNRNPU-AS1 HNRNPU antisense RNA 1 O - 20121230 -9606 284716 RIMKLA RP11-157D18.1 FAM80A|NAAGS|NAAGS-II HGNC:28725|Ensembl:ENSG00000177181|HPRD:14656|Vega:OTTHUMG00000007335 1 1p34.2 ribosomal modification protein rimK-like family member A protein-coding RIMKLA ribosomal modification protein rimK-like family member A O N-acetylaspartyl-glutamate synthetase A|N-acetylaspartylglutamate synthetase II|NAAG synthetase A|family with sequence similarity 80, member A|ribosomal protein S6 modification-like protein A 20121230 -9606 284723 SLC25A34 - RP11-169K16.2 HGNC:27653|MIM:610817|Ensembl:ENSG00000162461|HPRD:17340|Vega:OTTHUMG00000003063 1 1p36.21 solute carrier family 25, member 34 protein-coding SLC25A34 solute carrier family 25, member 34 O solute carrier family 25 member 34 20121230 -9606 284729 ESPNP - RP1-163M9.1|dJ1182A14.1 HGNC:23285 1 1p36.13 espin pseudogene pseudo ESPNP espin pseudogene O - 20121230 -9606 284739 LINC00176 - NCRNA00176|PRR17 HGNC:27655|HPRD:17341 20 20q13.33 long intergenic non-protein coding RNA 176 miscRNA LINC00176 long intergenic non-protein coding RNA 176 O - 20121230 -9606 284749 LINC00494 - - HGNC:27657 20 20q13.13 long intergenic non-protein coding RNA 494 miscRNA LINC00494 long intergenic non-protein coding RNA 494 O - 20121230 -9606 284751 LOC284751 - - HPRD:18771 20 20q13.13 uncharacterized LOC284751 miscRNA - - - - 20121230 -9606 284756 C20orf197 UNQ3000 RP5-1017F8.1 HGNC:26601|Ensembl:ENSG00000176659|HPRD:08749|Vega:OTTHUMG00000032880 20 20q13.33 chromosome 20 open reading frame 197 protein-coding C20orf197 chromosome 20 open reading frame 197 O uncharacterized protein C20orf197 20121230 -9606 284757 LOC284757 - - HPRD:17342 20 20q13.33 uncharacterized LOC284757 miscRNA - - - - 20121230 -9606 284759 SIRPB2 RP4-776F14.1 PTPN1L|PTPNS1L3|dJ776F14.2 HGNC:16247|Ensembl:ENSG00000196209|Vega:OTTHUMG00000031670 20 20p13 signal-regulatory protein beta 2 protein-coding SIRPB2 signal-regulatory protein beta 2 O SIRP-beta-2|protein tyrosine phosphatase non-receptor type substrate 1-like 3|protein tyrosine phosphatase non-receptor type substrate protein|protein tyrosine phosphatase, non-receptor type substrate 1-like 3|signal-regulatory protein beta-2 20121230 -9606 284764 FTLP3 - FTLL1|dJ681N20.2 HGNC:4000 20 20p13 ferritin, light polypeptide pseudogene 3 pseudo FTLP3 ferritin, light polypeptide pseudogene 3 O - 20121230 -9606 284788 LOC284788 - - - 20 20p11.21 uncharacterized LOC284788 miscRNA - - - - 20121230 -9606 284798 LOC284798 - - - 20 20p11.21 uncharacterized LOC284798 miscRNA - - - - 20121230 -9606 284800 FAM182A RP13-329D4.5 C20orf91|bB329D4.1 HGNC:16222|HPRD:08240 20 20p11.1 family with sequence similarity 182, member A miscRNA FAM182A family with sequence similarity 182, member A O - 20121230 -9606 284801 LOC284801 - - - 20 20p11.1 uncharacterized LOC284801 miscRNA - - - - 20121230 -9606 284802 FRG1B RP11-348I14.5 C20orf80|bA348I14.2 HGNC:15792|HPRD:17570 20 20q11.21 FSHD region gene 1 family, member B pseudo FRG1B FSHD region gene 1 family, member B O - 20121230 -9606 284805 C20orf203 - - HGNC:26592|HPRD:08164 20 20q11.21 chromosome 20 open reading frame 203 protein-coding C20orf203 chromosome 20 open reading frame 203 O alugen|uncharacterized protein C20orf203 20121230 -9606 284808 FLJ38773 - - - 20 20q11.22 uncharacterized protein FLJ38773 unknown - - - - 20111109 -9606 284821 RPL13AP7 - RPL13A_12_1722 HGNC:23755 21 21q21.2 ribosomal protein L13a pseudogene 7 pseudo RPL13AP7 ribosomal protein L13a pseudogene 7 O - 20121230 -9606 284825 LOC284825 - - - 21 21q21.3 uncharacterized LOC284825 protein-coding - - - - 20120508 -9606 284827 KRTAP13-4 - KAP13.4 HGNC:18926|Ensembl:ENSG00000186971|HPRD:11203|Vega:OTTHUMG00000057770 21 21q22.1 keratin associated protein 13-4 protein-coding KRTAP13-4 keratin associated protein 13-4 O keratin-associated protein 13-4 20121230 -9606 284835 LINC00323 - C21orf130|NCRNA00323|PRED42 HGNC:19720 21 21q22.2 long intergenic non-protein coding RNA 323 miscRNA LINC00323 long intergenic non-protein coding RNA 323 O - 20121230 -9606 284836 LINC00319 - C21orf125|NCRNA00319|PRED49 HGNC:19730|HPRD:10738 21 21q22.3 long intergenic non-protein coding RNA 319 miscRNA LINC00319 long intergenic non-protein coding RNA 319 O - 20121230 -9606 284837 LOC284837 - - HPRD:11256 21 21q22.3 uncharacterized LOC284837 miscRNA - - - - 20121230 -9606 284861 LOC284861 - - HPRD:17343 22 22q11.21 uncharacterized LOC284861 unknown - - - - 20121209 -9606 284865 LOC284865 hCG_1820679 - - 22 22q11.21 uncharacterized LOC284865 miscRNA - - - - 20121230 -9606 284889 LOC284889 - - - 22 22q11.23 uncharacterized LOC284889 miscRNA - - - - 20121230 -9606 284898 LOC284898 - - - 22 22q12.1 uncharacterized LOC284898 unknown - - - - 20121102 -9606 284900 TTC28-AS1 - TTC28-AS|TTC28AS|dJ353E16.2 HGNC:29336 22 22q12.1 TTC28 antisense RNA 1 miscRNA TTC28-AS1 TTC28 antisense RNA 1 O - 20121230 -9606 284904 SEC14L4 - TAP3 HGNC:20627|MIM:612825|Ensembl:ENSG00000133488|HPRD:15312|Vega:OTTHUMG00000151258 22 22q12.2 SEC14-like 4 (S. cerevisiae) protein-coding SEC14L4 SEC14-like 4 (S. cerevisiae) O SEC14-like protein 4|SEC14p-like protein TAP3|tocopherol-associated protein 3 20121230 -9606 284912 LOC284912 - - HPRD:14155 22 22q12.3 uncharacterized LOC284912 unknown - - - - 20120815 -9606 284926 LOC284926 - - - 22 22q13.31 uncharacterized LOC284926 unknown - - - - 20120508 -9606 284930 LOC284930 - - - 22 22q13.32 uncharacterized LOC284930 unknown - - - - 20120508 -9606 284933 LOC284933 CTA-299D3.8 - - 22 22q13.32 uncharacterized LOC284933 miscRNA - - - - 20121230 -9606 284939 LOC284939 - - - 22 22q13.33 uncharacterized LOC284939 unknown - - - - 20120508 -9606 284942 RPL23AP82 - RPL23A_43_1761 HGNC:33730|HPRD:14701 22 22q13.33 ribosomal protein L23a pseudogene 82 pseudo RPL23AP82 ribosomal protein L23a pseudogene 82 O - 20121230 -9606 284948 SH2D6 - - HGNC:30439|Ensembl:ENSG00000152292|HPRD:14156|Vega:OTTHUMG00000130176 2 2p11.2 SH2 domain containing 6 protein-coding SH2D6 SH2 domain containing 6 O SH2 domain-containing protein 6 20121230 -9606 284950 LOC284950 - - - 2 2p11.2 uncharacterized LOC284950 miscRNA - - - - 20121230 -9606 284958 NT5DC4 - - HGNC:27678|Ensembl:ENSG00000144130|Vega:OTTHUMG00000153308 2 2q13 5'-nucleotidase domain containing 4 protein-coding NT5DC4 5'-nucleotidase domain containing 4 O - 20121230 -9606 284967 bA395L14.13 - - - 2 2q14.1 acrosin-like protease protein-coding - - - - 20100404 -9606 284988 RHOQP3 - - HGNC:37837 2 2q21.1 ras homolog family member Q pseudogene 3 pseudo RHOQP3 ras homolog family member Q pseudogene 3 O - 20121230 -9606 284992 CCDC150 - - HGNC:26834|Ensembl:ENSG00000144395|HPRD:08264|HPRD:08537|Vega:OTTHUMG00000154475 2 2q33.1 coiled-coil domain containing 150 protein-coding CCDC150 coiled-coil domain containing 150 O coiled-coil domain-containing protein 150 20121230 -9606 284996 RNF149 - DNAPTP2 HGNC:23137|Ensembl:ENSG00000163162|HPRD:11513|Vega:OTTHUMG00000130685 2 2q11.2 ring finger protein 149 protein-coding RNF149 ring finger protein 149 O DNA polymerase-transactivated protein 2|E3 ubiquitin-protein ligase RNF149 20121230 -9606 284998 LOC284998 - - - 2 2q12.1 uncharacterized LOC284998 miscRNA - - - - 20121230 -9606 285000 LOC285000 - - - 2 2q12.2 uncharacterized LOC285000 miscRNA - - - - 20121230 -9606 285003 MRPL36P1 - - HGNC:29708 2 2p13.2 mitochondrial ribosomal protein L36 pseudogene 1 pseudo MRPL36P1 mitochondrial ribosomal protein L36 pseudogene 1 O - 20121230 -9606 285016 FAM150B hCG_1990170 PRO1097|RGPG542 HGNC:27683|Ensembl:ENSG00000189292|HPRD:17344|Vega:OTTHUMG00000151366 2 2p25.3 family with sequence similarity 150, member B protein-coding FAM150B family with sequence similarity 150, member B O protein FAM150B 20121230 -9606 285025 CCDC141 - CAMDI HGNC:26821|Ensembl:ENSG00000163492|HPRD:08257|Vega:OTTHUMG00000132578 2 2q31.2 coiled-coil domain containing 141 protein-coding CCDC141 coiled-coil domain containing 141 O coiled-coil domain-containing protein 141|coiled-coil protein associated with myosin II and DISC1 20121230 -9606 285033 LOC285033 - - HPRD:18772 2 2q11.2 uncharacterized LOC285033 miscRNA - - - - 20121230 -9606 285043 LOC285043 - - - 2 2p23.3 uncharacterized LOC285043 unknown - - - - 20120508 -9606 285045 LINC00486 - - HGNC:42946 2 2p22.3 long intergenic non-protein coding RNA 486 miscRNA LINC00486 long intergenic non-protein coding RNA 486 O - 20121230 -9606 285051 C2orf61 - - HGNC:26850|Ensembl:ENSG00000239605|HPRD:08273|Vega:OTTHUMG00000128851 2 2p21 chromosome 2 open reading frame 61 protein-coding C2orf61 chromosome 2 open reading frame 61 O uncharacterized protein C2orf61 20121230 -9606 285053 RPL18AP6 - RPL18A_1_215 HGNC:36266 2 2p16.3 ribosomal protein L18a pseudogene 6 pseudo RPL18AP6 ribosomal protein L18a pseudogene 6 O - 20121230 -9606 285074 LOC285074 - - HPRD:17345 2 2p11.2 anaphase promoting complex subunit 1 pseudogene pseudo - - - - 20121230 -9606 285084 LOC285084 - - - 2 2q31.1 uncharacterized LOC285084 miscRNA - - - - 20121230 -9606 285093 CXXC11 - C2orf85 HGNC:26585|Ensembl:ENSG00000188011|HPRD:08159|Vega:OTTHUMG00000151341 2 2q37.3 CXXC finger protein 11 protein-coding CXXC11 CXXC finger protein 11 O CXXC-type zinc finger protein 11 20121230 -9606 285095 LOC285095 - - - 2 2q37.3 uncharacterized LOC285095 protein-coding - - - - 20121209 -9606 285097 FLJ38379 - - HPRD:08242 2 2q37.3 uncharacterized FLJ38379 unknown - - - - 20121209 -9606 285103 CCDC74B-AS1 - - HGNC:44130 2 2q21.2 CCDC74B antisense RNA 1 miscRNA CCDC74B-AS1 CCDC74B antisense RNA 1 O - 20121230 -9606 285116 AHCTF1P1 - AHCTF1P|ELYS-like HGNC:24620 2 2q24.2 AT hook containing transcription factor 1 pseudogene 1 pseudo AHCTF1P1 AT hook containing transcription factor 1 pseudogene 1 O - 20121230 -9606 285126 DNAJC5G - CSP-gamma HGNC:24844|MIM:613946|Ensembl:ENSG00000163793|HPRD:07108|Vega:OTTHUMG00000097079 2 2p23.3 DnaJ (Hsp40) homolog, subfamily C, member 5 gamma protein-coding DNAJC5G DnaJ (Hsp40) homolog, subfamily C, member 5 gamma O cysteine string protein-gamma|dnaJ homolog subfamily C member 5G|gamma cysteine string protein|gamma-CSP|gamma-cysteine string protein 20121230 -9606 285141 ERICH2 - - HGNC:44395|Ensembl:ENSG00000204334|Vega:OTTHUMG00000154074 2 2q31.1 glutamate-rich 2 protein-coding ERICH2 glutamate-rich 2 O glutamate-rich protein 2 20121230 -9606 285147 LOC285147 - - - 2 2p25.2 uncharacterized LOC285147 unknown - - - - 20120508 -9606 285148 IAH1 - - HGNC:27696|Ensembl:ENSG00000134330|Vega:OTTHUMG00000159076 2 2p25.1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) protein-coding IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) O isoamyl acetate-hydrolyzing esterase 1 homolog 20121230 -9606 285150 FLJ33534 - - HPRD:08158 2 2p25.1 uncharacterized LOC285150 miscRNA - - - - 20121230 -9606 285154 CYP1B1-AS1 - C2orf58 HGNC:28543|HPRD:14592 2 2p22.2 CYP1B1 antisense RNA 1 miscRNA CYP1B1-AS1 CYP1B1 antisense RNA 1 O - 20121230 -9606 285172 FAM126B - HYCC2 HGNC:28593|Ensembl:ENSG00000155744|HPRD:11345|Vega:OTTHUMG00000132823 2 2q33.1 family with sequence similarity 126, member B protein-coding FAM126B family with sequence similarity 126, member B O protein FAM126B 20121230 -9606 285173 LOC285173 - - - 2 2q33.3-q34 uncharacterized LOC285173 protein-coding - - - - 20120508 -9606 285175 UNC80 - C2orf21|UNC-80 HGNC:26582|MIM:612636|Ensembl:ENSG00000144406|HPRD:12809|Vega:OTTHUMG00000132963 2 2q35 unc-80 homolog (C. elegans) protein-coding UNC80 unc-80 homolog (C. elegans) O WUGSC:H_NH0436C12.1|protein unc-80 homolog 20121230 -9606 285176 RPL10P6 - - - 2 2q35 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 285178 LOC285178 - - - 2 2q35 uncharacterized LOC285178 protein-coding - - - - 20120508 -9606 285180 RUFY4 - - HGNC:24804|Ensembl:ENSG00000188282|HPRD:13539|Vega:OTTHUMG00000155235 2 2q35 RUN and FYVE domain containing 4 protein-coding RUFY4 RUN and FYVE domain containing 4 O RUN and FYVE domain-containing protein 4 20121230 -9606 285181 LOC285181 - - - 2 2q36.1 uncharacterized LOC285181 protein-coding - - - - 20120508 -9606 285189 PLGLA - PLGLA1|PLGP2|PRGA HGNC:9074|MIM:612212 2 2q12.2 plasminogen-like A pseudo PLGLA plasminogen-like A O - 20121230 -9606 285190 RGPD4 - RGP4 HGNC:32417|MIM:612707|Ensembl:ENSG00000196862|Vega:OTTHUMG00000153208 2 2q12.3 RANBP2-like and GRIP domain containing 4 protein-coding RGPD4 RANBP2-like and GRIP domain containing 4 O ranBP2-like and GRIP domain-containing protein 4 20121230 -9606 285191 LOC285191 - - - 2 2q37.3 uncharacterized LOC285191 unknown - - - - 20120508 -9606 285193 DUSP28 - DUSP26|VHP HGNC:33237|Ensembl:ENSG00000188542|HPRD:18773|Vega:OTTHUMG00000152310 2 2q37.3 dual specificity phosphatase 28 protein-coding DUSP28 dual specificity phosphatase 28 O - 20121230 -9606 285194 LSAMP-AS3 - LSAMP-AS1|NCRNA00295 HGNC:27701 3 3q13.31 LSAMP antisense RNA 3 miscRNA LSAMP-AS3 LSAMP antisense RNA 3 O - 20121230 -9606 285195 SLC9A9 Nbla00118 AUTS16|NHE9 HGNC:20653|MIM:608396|Ensembl:ENSG00000181804|HPRD:12226|Vega:OTTHUMG00000159373 3 3q24 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 protein-coding SLC9A9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 O Na(+)/H(+) exchanger 9|putative protein product of Nbla00118|sodium/hydrogen exchanger 9|sodium/proton exchanger NHE9|solute carrier family 9 (sodium/hydrogen exchanger) 20121230 -9606 285203 EOGT - AER61|C3orf64|EOGT1 HGNC:28526|MIM:614789|Ensembl:ENSG00000163378|HPRD:12435|Vega:OTTHUMG00000156279 3 3p14.1 EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding EOGT EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase O AER61 glycosyltransferase|EGF domain-specific O-linked N-acetylglucosamine transferase|extracellular O-linked N-acetylglucosamine transferase 20121230 -9606 285205 LINC00636 - - HGNC:27702 3 3q13.12 long intergenic non-protein coding RNA 636 miscRNA LINC00636 long intergenic non-protein coding RNA 636 O - 20121230 -9606 285220 EPHA6 UNQ6114 EK12|EPA6|PRO57066 HGNC:19296|MIM:600066|Ensembl:ENSG00000080224|Vega:OTTHUMG00000159208 3 3q11.2 EPH receptor A6 protein-coding EPHA6 EPH receptor A6 O EHK-2|EPH homology kinase 2|EPH-like kinase 12|ephrin receptor EphA6|ephrin type-A receptor 6 20121230 -9606 285224 DNAJB8-AS1 - - HGNC:41029 3 3q21.3 DNAJB8 antisense RNA 1 miscRNA DNAJB8-AS1 DNAJB8 antisense RNA 1 O - 20121230 -9606 285231 FBXW12 - FBW12|FBXO12|FBXO35 HGNC:20729|MIM:609075|Ensembl:ENSG00000164049|HPRD:16428|Vega:OTTHUMG00000133530 3 3p21.31 F-box and WD repeat domain containing 12 protein-coding FBXW12 F-box and WD repeat domain containing 12 O F-box and WD-40 domain protein 12|F-box and WD-40 domain-containing protein 12|F-box only protein 35|F-box- and WD40-repeat-containing protein|F-box/WD repeat-containing protein 12 20121230 -9606 285232 LOC285232 - - - 3 3p12.1 phosphoribosyl pyrophosphate amidotransferase pseudogene pseudo - - - - 20121230 -9606 285237 C3orf38 - - HGNC:28384|Ensembl:ENSG00000179021|HPRD:14509|Vega:OTTHUMG00000155752 3 3p11.1 chromosome 3 open reading frame 38 protein-coding C3orf38 chromosome 3 open reading frame 38 O uncharacterized protein C3orf38 20121230 -9606 285242 HTR3E - 5-HT3-E|5-HT3E|5-HT3c1 HGNC:24005|MIM:610123|Ensembl:ENSG00000186038|HPRD:17122|Vega:OTTHUMG00000156857 3 3q27.1 5-hydroxytryptamine (serotonin) receptor 3E, ionotropic protein-coding HTR3E 5-hydroxytryptamine (serotonin) receptor 3E, ionotropic O 5-hydroxytryptamine (serotonin) receptor 3, family member E|5-hydroxytryptamine receptor 3 subunit E|5-hydroxytryptamine receptor 3E 20121230 -9606 285260 RPL31P18 - RPL31_7_358 HGNC:35833 3 3p22.3 ribosomal protein L31 pseudogene 18 pseudo RPL31P18 ribosomal protein L31 pseudogene 18 O - 20121230 -9606 285266 ENTPD3-AS1 - - HGNC:26710 3 3p21.33 ENTPD3 antisense RNA 1 miscRNA ENTPD3-AS1 ENTPD3 antisense RNA 1 O - 20121230 -9606 285267 ZNF619 - - HGNC:26910|Ensembl:ENSG00000177873|HPRD:15877|Vega:OTTHUMG00000131391 3 3p22.1 zinc finger protein 619 protein-coding ZNF619 zinc finger protein 619 O - 20121230 -9606 285268 ZNF621 - - HGNC:24787|Ensembl:ENSG00000172888|HPRD:15879|Vega:OTTHUMG00000131389 3 3p22.1 zinc finger protein 621 protein-coding ZNF621 zinc finger protein 621 O - 20121230 -9606 285281 LOC285281 - - - 3 3p21.33 uncharacterized LOC285281 protein-coding - - - - 20120508 -9606 285282 RABL3 - - HGNC:18072|Ensembl:ENSG00000144840|HPRD:15203|Vega:OTTHUMG00000159668 3 3q13.33 RAB, member of RAS oncogene family-like 3 protein-coding RABL3 RAB, member of RAS oncogene family-like 3 O rab-like protein 3 20121230 -9606 285286 LOC285286 - - - 3 3p14.2 uncharacterized LOC285286 miscRNA - - - - 20121102 -9606 285296 UNC93B3 - UNC93B3P HGNC:13483 3 3p12.3 unc-93 homolog B3 pseudogene (C. elegans) pseudo UNC93B3 unc-93 homolog B3 pseudogene (C. elegans) O - 20121230 -9606 285299 LOC285299 - - - 3 3p12.3 FSHD region gene 2 family, member C-like protein-coding - - - - 20121102 -9606 285300 LOC285300 - - - 3 3p14.1 uncharacterized LOC285300 unknown - - - - 20120508 -9606 285303 LOC285303 - - - 3 3q29 family with sequence similarity 151, member A pseudogene pseudo - - - - 20121230 -9606 285311 C3orf56 - - HGNC:32481|HPRD:16949 3 3q21.3 chromosome 3 open reading frame 56 unknown C3orf56 chromosome 3 open reading frame 56 O - 20121230 -9606 285313 IGSF10 - CMF608 HGNC:26384|Ensembl:ENSG00000152580|HPRD:13732|Vega:OTTHUMG00000159856 3 3q25.1 immunoglobulin superfamily, member 10 protein-coding IGSF10 immunoglobulin superfamily, member 10 O calvaria mechanical force protein 608|immunoglobulin superfamily member 10 20121230 -9606 285314 PABPC1P10 - D3S3192|PAB1|PABPL1 HGNC:37992|MIM:173865 3 3q25.2 poly(A) binding protein, cytoplasmic 1 pseudogene 10 pseudo PABPC1P10 poly(A) binding protein, cytoplasmic 1 pseudogene 10 O - 20121230 -9606 285315 C3orf33 MSTP052 AC3-33 HGNC:26434|Ensembl:ENSG00000174928|HPRD:08095|Vega:OTTHUMG00000158496 3 3q25.31 chromosome 3 open reading frame 33 protein-coding C3orf33 chromosome 3 open reading frame 33 O AP-1 activity suppressor|uncharacterized protein C3orf33 20121230 -9606 285326 LINC00692 - - HGNC:27708 3 3p24.2 long intergenic non-protein coding RNA 692 miscRNA LINC00692 long intergenic non-protein coding RNA 692 O - 20121230 -9606 285329 UBQLN4P1 - C3orf12|UBQLN4P HGNC:31133 3 3q24 ubiquilin 4 pseudogene 1 pseudo UBQLN4P1 ubiquilin 4 pseudogene 1 O - 20121230 -9606 285331 CCDC66 - - HGNC:27709|Ensembl:ENSG00000180376|HPRD:14569|Vega:OTTHUMG00000155748 3 3p14.3 coiled-coil domain containing 66 protein-coding CCDC66 coiled-coil domain containing 66 O coiled-coil domain-containing protein 66 20121230 -9606 285335 SLC9C1 - SLC9A10|sperm-NHE HGNC:31401|MIM:612738|Ensembl:ENSG00000172139|HPRD:11257|Vega:OTTHUMG00000159245 3 3q13.2 solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 protein-coding SLC9C1 solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 O NHE-10|Na(+)/H(+) exchanger 10|sNHE|sodium/hydrogen exchanger 10|solute carrier family 10 member 10|solute carrier family 9|solute carrier family 9 member C1|solute carrier family 9, member 10|sperm-specific Na(+)/H(+) exchanger|sperm-specific sodium proton exchanger 20121230 -9606 285343 TCAIM - C3orf23|TOAG-1|TOAG1 HGNC:25241|Ensembl:ENSG00000179152|HPRD:13184|Vega:OTTHUMG00000133049 3 3p21.31 T cell activation inhibitor, mitochondrial protein-coding TCAIM T cell activation inhibitor, mitochondrial O tolerance associated gene-1|uncharacterized protein C3orf23 20121230 -9606 285346 ZNF852 - - HGNC:27713|Ensembl:ENSG00000178917|Vega:OTTHUMG00000156453 3 3p21.31 zinc finger protein 852 protein-coding ZNF852 zinc finger protein 852 O putative zinc finger protein 852 20121230 -9606 285349 ZNF660 - - HGNC:26720|Ensembl:ENSG00000144792|HPRD:08213|Vega:OTTHUMG00000133097 3 3p21.31 zinc finger protein 660 protein-coding ZNF660 zinc finger protein 660 O - 20121230 -9606 285352 KIF9-AS1 - - HGNC:26822 3 3p21.31 KIF9 antisense RNA 1 miscRNA KIF9-AS1 KIF9 antisense RNA 1 O - 20121230 -9606 285359 PDCL3P4 - - HGNC:44505 3 3q12.3 phosducin-like 3 pseudogene 4 pseudo PDCL3P4 phosducin-like 3 pseudogene 4 O - 20121230 -9606 285362 SUMF1 UNQ3037 AAPA3037|FGE HGNC:20376|MIM:607939|Ensembl:ENSG00000144455|HPRD:06399|Vega:OTTHUMG00000090269 3 3p26.1 sulfatase modifying factor 1 protein-coding SUMF1 sulfatase modifying factor 1 O C-alpha-formylglycine-generating enzyme 1|FGly-generating enzyme|sulfatase-modifying factor 1 20121230 -9606 285367 RPUSD3 - - HGNC:28437|Ensembl:ENSG00000156990|HPRD:14532|Vega:OTTHUMG00000128441 3 3p25.3 RNA pseudouridylate synthase domain containing 3 protein-coding RPUSD3 RNA pseudouridylate synthase domain containing 3 O RNA pseudouridylate synthase domain-containing protein 3 20121230 -9606 285368 PRRT3 UNQ5823/PRO19642 - HGNC:26591|Ensembl:ENSG00000163704|HPRD:16935|Vega:OTTHUMG00000155285 3 3p25.3 proline-rich transmembrane protein 3 protein-coding PRRT3 proline-rich transmembrane protein 3 O - 20121230 -9606 285370 LINC00606 - - HGNC:43931 3 3p25.3 long intergenic non-protein coding RNA 606 miscRNA LINC00606 long intergenic non-protein coding RNA 606 O - 20121230 -9606 285375 LINC00620 - - HGNC:44223 3 3p25.1 long intergenic non-protein coding RNA 620 miscRNA LINC00620 long intergenic non-protein coding RNA 620 O - 20121230 -9606 285378 LOC285378 - - - 3 3p25.1 uncharacterized LOC285378 protein-coding - - - - 20120508 -9606 285381 DPH3 - DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 HGNC:27717|MIM:608959|Ensembl:ENSG00000154813|HPRD:16412|Vega:OTTHUMG00000129866 3 3p25.1 DPH3, KTI11 homolog (S. cerevisiae) protein-coding DPH3 DPH3, KTI11 homolog (S. cerevisiae) O CSL-type zinc finger-containing protein 2|DPH3 homolog|DPH3 homolog (KTI11, S. cerevisiae)|DPH3A, KTI11 homolog A|Del-GEF interacting protein|deafness locus putative guanine nucleotide exchange factor interacting protein 1|delGEF-interacting protein 1|diphtheria toxin and Pseudomonas exotoxin A sensitivity required gene 1|zinc finger, CSL domain containing 2|zinc finger, CSL-type containing 2 20121230 -9606 285382 C3orf70 - - HGNC:33731|Ensembl:ENSG00000187068|HPRD:18774|Vega:OTTHUMG00000156696 3 3q27.2 chromosome 3 open reading frame 70 protein-coding C3orf70 chromosome 3 open reading frame 70 O UPF0524 protein C3orf70 20121230 -9606 285386 TPRG1 - FAM79B HGNC:24759|Ensembl:ENSG00000188001|HPRD:13451|Vega:OTTHUMG00000156321 3 3q28 tumor protein p63 regulated 1 protein-coding TPRG1 tumor protein p63 regulated 1 O family with sequence similarity 79, member B|tumor protein p63-regulated gene 1 protein 20121230 -9606 285389 LOC285389 - - - 3 3q29 uncharacterized LOC285389 unknown - - - - 20120508 -9606 285401 LINC00698 - - HGNC:27720 3 3p14.2 long intergenic non-protein coding RNA 698 miscRNA LINC00698 long intergenic non-protein coding RNA 698 O - 20121230 -9606 285407 ALG1L9P - - HGNC:44378 11 11q13.4 asparagine-linked glycosylation 1-like 9, pseudogene pseudo ALG1L9P asparagine-linked glycosylation 1-like 9, pseudogene O - 20121230 -9606 285412 TOX4P1 - - HGNC:44009 4 4q25 TOX high mobility group box family member 4 pseudogene 1 pseudo TOX4P1 TOX high mobility group box family member 4 pseudogene 1 O - 20121230 -9606 285415 MRPL42P1 - - HGNC:29710 4 4q26 mitochondrial ribosomal protein L42 pseudogene 1 pseudo MRPL42P1 mitochondrial ribosomal protein L42 pseudogene 1 O - 20121230 -9606 285419 LOC285419 - - - 4 4q28.1 uncharacterized LOC285419 miscRNA - - - - 20121230 -9606 285422 LOC285422 - - - 4 4q31.21 uncharacterized LOC285422 unknown - - - - 20120508 -9606 285423 LOC285423 - - - 4 4q31.23 uncharacterized LOC285423 protein-coding - - - - 20121230 -9606 285429 DCAF4L1 - WDR21B HGNC:27723|Ensembl:ENSG00000182308|HPRD:18775|Vega:OTTHUMG00000160527 4 4p13 DDB1 and CUL4 associated factor 4-like 1 protein-coding DCAF4L1 DDB1 and CUL4 associated factor 4-like 1 O DDB1- and CUL4-associated factor 4-like protein 1|WD repeat domain 21B|WD repeat-containing protein 21B 20121230 -9606 285431 LOC285431 - - - 4 4q35.1 uncharacterized LOC285431 protein-coding - - - - 20120508 -9606 285440 CYP4V2 UNQ2560 BCD|CYP4AH1 HGNC:23198|MIM:608614|Ensembl:ENSG00000145476|HPRD:16777|Vega:OTTHUMG00000160379 4 4q35.2 cytochrome P450, family 4, subfamily V, polypeptide 2 protein-coding CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 O cytochrome P450 4V2 20121230 -9606 285441 LOC285441 - - - 4 4q35.2 uncharacterized LOC285441 miscRNA - - - - 20121230 -9606 285442 LOC285442 - - - 4 4q35.2 mitochondrial translational release factor 1-like pseudogene pseudo - - - - 20121230 -9606 285453 LOC285453 - - - 4 4q12 TXNDC9 pseudogene pseudo - - - - 20121230 -9606 285456 RPL34-AS1 - - HGNC:26749|HPRD:08228 4 4q25 RPL34 antisense RNA 1 (head to head) miscRNA RPL34-AS1 RPL34 antisense RNA 1 (head to head) O - 20121230 -9606 285463 LOC285463 - - - 4 4p16.3 uncharacterized LOC285463 unknown - - - - 20121230 -9606 285464 CRIPAK - - HGNC:26619|MIM:610203|Ensembl:ENSG00000179979|HPRD:08753|Vega:OTTHUMG00000121131 4 4p16.3 cysteine-rich PAK1 inhibitor protein-coding CRIPAK cysteine-rich PAK1 inhibitor O cysteine-rich inhibitor of PAK1 20121230 -9606 285484 LOC285484 - - - 4 4p16.1 uncharacterized LOC285484 miscRNA - - - - 20121230 -9606 285489 DOK7 RP11-529E10.4 C4orf25|CMS1B HGNC:26594|MIM:610285|Ensembl:ENSG00000175920|HPRD:08744|Vega:OTTHUMG00000122087 4 4p16.3 docking protein 7 protein-coding DOK7 docking protein 7 O downstream of tyrosine kinase 7|protein Dok-7 20121230 -9606 285492 FLJ35424 - - HPRD:08181 4 4p16.3 uncharacterized FLJ35424 miscRNA - - - - 20121230 -9606 285498 RNF212 - ZHP3 HGNC:27729|MIM:612041|Ensembl:ENSG00000178222|HPRD:14158|Vega:OTTHUMG00000118997 4 4p16.3 ring finger protein 212 protein-coding RNF212 ring finger protein 212 O RING finger protein 212 20121230 -9606 285500 LOC285500 - - - 4 4q34.3 uncharacterized LOC285500 protein-coding - - - - 20120508 -9606 285501 LOC285501 - - - 4 4q34.3 uncharacterized LOC285501 miscRNA - - - - 20121230 -9606 285505 LOC285505 - - - 4 4q32.1 uncharacterized LOC285505 miscRNA - - - - 20121017 -9606 285512 FAM13A-AS1 - FAM13A1OS|FAM13AOS|NCRNA00039 HGNC:19370|MIM:613300 4 4q22.1 FAM13A antisense RNA 1 miscRNA FAM13A-AS1 FAM13A antisense RNA 1 O - 20121230 -9606 285513 GPRIN3 - GRIN3 HGNC:27733|MIM:611241|Ensembl:ENSG00000185477|HPRD:14159|Vega:OTTHUMG00000161044 4 4q22.1 GPRIN family member 3 protein-coding GPRIN3 GPRIN family member 3 O G protein-regulated inducer of neurite outgrowth 3 20121230 -9606 285521 COX18 - COX18HS HGNC:26801|MIM:610428|Ensembl:ENSG00000163626|HPRD:08249|Vega:OTTHUMG00000129917 4 4q13.3 cytochrome c oxidase assembly homolog 18 (yeast) protein-coding COX18 cytochrome c oxidase assembly homolog 18 (yeast) O COX18 cytochrome c oxidase assembly homolog|Cox18Hs1 protein|Cox18Hs2 protein|Cox18Hs3 protein|cytochrome c oxidase assembly protein 18|mitochondrial COX18|mitochondrial inner membrane protein COX18 20121230 -9606 285525 YIPF7 - FinGER9 HGNC:26825|Ensembl:ENSG00000177752|HPRD:08259|Vega:OTTHUMG00000160467 4 4p12 Yip1 domain family, member 7 protein-coding YIPF7 Yip1 domain family, member 7 O YIP1 family member 7|five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 9|protein YIPF7 20121230 -9606 285527 FRYL - KIAA0826 HGNC:29127|Ensembl:ENSG00000075539|Vega:OTTHUMG00000160608 4 4p11 FRY-like protein-coding FRYL FRY-like O ALL1-fused gene from chromosome 4p12 protein|furry homolog-like|furry-like|protein furry homolog-like 20121230 -9606 285533 RNF175 - - HGNC:27735|Ensembl:ENSG00000145428|HPRD:15262|Vega:OTTHUMG00000161557 4 4q31.3 ring finger protein 175 protein-coding RNF175 ring finger protein 175 O RING finger protein 175 20121230 -9606 285540 LOC285540 - - - 4 4p15.31 uncharacterized LOC285540 miscRNA - - - - 20121230 -9606 285547 LOC285547 - - - 4 4p15.33 uncharacterized LOC285547 miscRNA - - - - 20121230 -9606 285548 LOC285548 - - - 4 4p15.33 uncharacterized LOC285548 miscRNA - - - - 20121230 -9606 285550 FAM200B - - HGNC:27740|Ensembl:ENSG00000237765|Vega:OTTHUMG00000160279 4 4p15.32 family with sequence similarity 200, member B protein-coding FAM200B family with sequence similarity 200, member B O putative protein FAM200B 20121230 -9606 285555 STPG2 - C4orf37 HGNC:28712|Ensembl:ENSG00000163116|HPRD:14650|Vega:OTTHUMG00000131009 4 4q22.3-q23 sperm-tail PG-rich repeat containing 2 protein-coding STPG2 sperm-tail PG-rich repeat containing 2 O sperm-tail PG-rich repeat-containing protein 2 20121230 -9606 285556 LOC285556 - - - 4 4q23 uncharacterized LOC285556 protein-coding - - - - 20121230 -9606 285577 LOC285577 - - - 5 5p15.33 uncharacterized LOC285577 miscRNA - - - - 20121230 -9606 285588 EFCAB9 hCG_1645086 - HGNC:34530|Ensembl:ENSG00000214360|Vega:OTTHUMG00000163271 5 5q35.1 EF-hand calcium binding domain 9 protein-coding EFCAB9 EF-hand calcium binding domain 9 O EF-hand calcium-binding domain-containing protein 9|EF-hand domain-containing protein 20121230 -9606 285590 SH3PXD2B - FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 HGNC:29242|MIM:613293|Ensembl:ENSG00000174705|HPRD:18591|Vega:OTTHUMG00000163280 5 5q35.1 SH3 and PX domains 2B protein-coding SH3PXD2B SH3 and PX domains 2B O SH3 and PX domain-containing protein 2B|adapter protein HOFI|adaptor protein HOFI|factor for adipocyte differentiation 49|tyrosine kinase substrate with four SH3 domains 20121230 -9606 285591 LOC285591 - - - 5 5q35.1 pyrophosphatase (inorganic) 1 pseudogene pseudo - - - - 20121230 -9606 285593 LOC285593 - - - 5 5q35.2 uncharacterized LOC285593 miscRNA - - - - 20121230 -9606 285596 FAM153A - NY-REN-7 HGNC:29940|Ensembl:ENSG00000170074|HPRD:14870|Vega:OTTHUMG00000163394 5 5q35.3 family with sequence similarity 153, member A protein-coding FAM153A family with sequence similarity 153, member A O NY REN 7 antigen|protein FAM153A|renal carcinoma antigen NY-REN-7 20121230 -9606 285598 ARL10 - ARL10A HGNC:22042|Ensembl:ENSG00000175414|HPRD:12482|Vega:OTTHUMG00000130655 5 5q35.2 ADP-ribosylation factor-like 10 protein-coding ARL10 ADP-ribosylation factor-like 10 O ADP-ribosylation factor-like 10A|ADP-ribosylation factor-like membrane-associated protein|ADP-ribosylation factor-like protein 10 20121230 -9606 285600 KIAA0825 hCG_2016227 C5orf36 HGNC:28532|Ensembl:ENSG00000185261|HPRD:11337|Vega:OTTHUMG00000131331 5 5q15 KIAA0825 protein-coding KIAA0825 KIAA0825 O uncharacterized protein KIAA0825 20121230 -9606 285601 GPR150 - PGR11 HGNC:23628|Ensembl:ENSG00000178015|HPRD:11012|Vega:OTTHUMG00000121170 5 5q15 G protein-coupled receptor 150 protein-coding GPR150 G protein-coupled receptor 150 O probable G-protein coupled receptor 150|seven transmembrane helix receptor 20121230 -9606 285605 DTWD2 - - HGNC:19334|Ensembl:ENSG00000169570|HPRD:08168|Vega:OTTHUMG00000162956 5 5q23.1 DTW domain containing 2 protein-coding DTWD2 DTW domain containing 2 O DTW domain-containing protein 2 20121230 -9606 285613 RELL2 UNQ9423/PRO34565 C5orf16 HGNC:26902|MIM:611213|Ensembl:ENSG00000164620|HPRD:12830|Vega:OTTHUMG00000129612 5 5q31.3 RELT-like 2 protein-coding RELL2 RELT-like 2 O RELT-like protein 2|receptor expressed in lymphoid tissues like 2 20121230 -9606 285622 NBPF22P RP5-964H19.3 - HGNC:28731 5 5q14.3 neuroblastoma breakpoint family, member 22, pseudogene pseudo NBPF22P neuroblastoma breakpoint family, member 22, pseudogene O - 20121230 -9606 285626 LOC285626 - - - 5 5q33.3 uncharacterized LOC285626 miscRNA - - - - 20121230 -9606 285627 LOC285627 - - - 5 5q33.3 uncharacterized LOC285627 miscRNA - - - - 20121230 -9606 285628 LOC285628 - - - 5 5q34 uncharacterized LOC285628 protein-coding - - - - 20120508 -9606 285629 LOC285629 - - - 5 5q34 uncharacterized LOC285629 miscRNA - - - - 20121230 -9606 285634 INTS6P1 - - HGNC:43921 5 5p13.1 integrator complex subunit 6 pseudogene 1 pseudo INTS6P1 integrator complex subunit 6 pseudogene 1 O - 20121230 -9606 285636 C5orf51 - - HGNC:27750|Ensembl:ENSG00000205765|HPRD:11258|Vega:OTTHUMG00000162084 5 5p13.1 chromosome 5 open reading frame 51 protein-coding C5orf51 chromosome 5 open reading frame 51 O UPF0600 protein C5orf51 20121230 -9606 285638 LOC285638 - - - 5 5q21.3 uncharacterized LOC285638 unknown - - - - 20120508 -9606 285641 SLC36A3 - PAT3|TRAMD2|tramdorin2 HGNC:19659|MIM:608332|Ensembl:ENSG00000186334|HPRD:12216|Vega:OTTHUMG00000130128 5 5q33.1 solute carrier family 36 (proton/amino acid symporter), member 3 protein-coding SLC36A3 solute carrier family 36 (proton/amino acid symporter), member 3 O proton-coupled amino acid transporter 3|proton/amino acid transporter 3|solute carrier family 36 member 3|solute carrier family 36, member 3|tramdorin 2|tramdorin-2 20121230 -9606 285643 KIF4B - - HGNC:6322|MIM:609184|Ensembl:ENSG00000226650|Vega:OTTHUMG00000164143 5 5q33.1 kinesin family member 4B protein-coding KIF4B kinesin family member 4B O chromokinesin-B|chromosome-associated kinesin KIF4B 20121230 -9606 285647 SUDS3P1 - - HGNC:44000 5 5q35.3 suppressor of defective silencing 3 homolog (S. cerevisiae) pseudogene 1 pseudo SUDS3P1 suppressor of defective silencing 3 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 285659 OR2V2 - OR2V3|OST713 HGNC:15341|Ensembl:ENSG00000182613|HPRD:14956|Vega:OTTHUMG00000130933 5 5q35.3 olfactory receptor, family 2, subfamily V, member 2 protein-coding OR2V2 olfactory receptor, family 2, subfamily V, member 2 O olfactory receptor 2V2|olfactory receptor 2V3|olfactory receptor OR5-3|olfactory receptor, family 2, subfamily V, member 3 20121230 -9606 285668 C5orf64 - - HGNC:26744|Ensembl:ENSG00000178722|HPRD:09962|Vega:OTTHUMG00000162412 5 5q12.1 chromosome 5 open reading frame 64 protein-coding C5orf64 chromosome 5 open reading frame 64 O uncharacterized protein C5orf64 20121230 -9606 285671 RNF180 - - HGNC:27752|Ensembl:ENSG00000164197|HPRD:15263|Vega:OTTHUMG00000162278 5 5q12.3 ring finger protein 180 protein-coding RNF180 ring finger protein 180 O E3 ubiquitin-protein ligase RNF180 20121230 -9606 285672 SREK1IP1 - P18SRP|SFRS12IP1 HGNC:26716|Ensembl:ENSG00000153006|HPRD:08210|Vega:OTTHUMG00000162291 5 5q12.3 SREK1-interacting protein 1 protein-coding SREK1IP1 SREK1-interacting protein 1 O SFRS12-interacting protein 1|p18 splicing regulatory protein|protein SFRS12IP1|protein SREK1IP1|splicing regulatory protein of 18 kDa 20121230 -9606 285676 ZNF454 - - HGNC:21200|Ensembl:ENSG00000178187|HPRD:15796|Vega:OTTHUMG00000130891 5 5q35.3 zinc finger protein 454 protein-coding ZNF454 zinc finger protein 454 O - 20121230 -9606 285679 C5orf60 - - HGNC:27753|Ensembl:ENSG00000204661|Vega:OTTHUMG00000163221 5 5q35.3 chromosome 5 open reading frame 60 protein-coding C5orf60 chromosome 5 open reading frame 60 O putative uncharacterized protein C5orf60|putative uncharacterized protein FLJ35723 20121230 -9606 285690 LOC285690 - - - 5 5p15.32 uncharacterized LOC285690 protein-coding - - - - 20120508 -9606 285692 LOC285692 - - - 5 5p15.31 uncharacterized LOC285692 miscRNA - - - - 20121230 -9606 285696 LOC285696 - - HPRD:08169 5 5p15.1 uncharacterized LOC285696 miscRNA - - - - 20121230 -9606 285697 LOC285697 - - - 5 5p15.1 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene pseudo - - - - 20121230 -9606 285704 RGMB - DRAGON HGNC:26896|MIM:612687|Ensembl:ENSG00000174136|HPRD:15243|Vega:OTTHUMG00000162745 5 5q15 RGM domain family, member B protein-coding RGMB RGM domain family, member B O DRG11-responsive axonal guidance and outgrowth of neurite|RGM domain family member B|repulsive guidance molecule B 20121230 -9606 285706 LOC285706 - - - 5 5q21.1 cytokine receptor-like factor 3 pseudogene pseudo - - - - 20121230 -9606 285708 LINC00491 - - HGNC:43428 5 5q21.2 long intergenic non-protein coding RNA 491 miscRNA LINC00491 long intergenic non-protein coding RNA 491 O - 20121021 -9606 285735 LINC00326 - NCRNA00326 HGNC:41926|HPRD:18776 6 6q23.2 long intergenic non-protein coding RNA 326 miscRNA LINC00326 long intergenic non-protein coding RNA 326 O - 20121230 -9606 285736 FLJ35700 - - - 6 6q23.2 uncharacterized protein FLJ35700 protein-coding - - - uncharacterized protein LOC285736 20111025 -9606 285737 CCRL1P1 - CCRL1P|dJ509I19.4 HGNC:21142 6 6q24.1 chemokine (C-C motif) receptor-like 1 pseudogene pseudo CCRL1P1 chemokine (C-C motif) receptor-like 1 pseudogene O - 20121230 -9606 285740 LOC285740 - - - 6 6q24.2 uncharacterized LOC285740 miscRNA - - - - 20121230 -9606 285741 LOC285741 - - - 6 6q24.2 tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 285753 CEP57L1 RP11-487F23.2 C6orf182|bA487F23.2|cep57R HGNC:21561|Ensembl:ENSG00000183137|HPRD:10792|Vega:OTTHUMG00000015336 6 6q21 centrosomal protein 57kDa-like 1 protein-coding CEP57L1 centrosomal protein 57kDa-like 1 O centrosomal protein 57kDa-like protein 1|centrosomal protein CEP57L1|centrosomal protein of 57 kDa-related protein|cep57-related protein 20121230 -9606 285755 PPIL6 RP11-425D10.6 RSPH12|bA425D10.6|dJ919F19.1 HGNC:21557|Ensembl:ENSG00000185250|HPRD:15165|Vega:OTTHUMG00000036593 6 6q21 peptidylprolyl isomerase (cyclophilin)-like 6 protein-coding PPIL6 peptidylprolyl isomerase (cyclophilin)-like 6 O PPIase|cyclophilin-like protein PPIL6|peptidyl-prolyl cis-trans isomerase-like 6|peptidyl-prolyl cis-trans isomerase-like variant a|radial spoke 12 homolog|rotamase PPIL6 20121230 -9606 285758 LOC285758 - - - 6 6q21 uncharacterized LOC285758 miscRNA - - - - 20121230 -9606 285759 FLJ34503 - - HPRD:08173 6 6q21 uncharacterized FLJ34503 miscRNA - - - - 20121230 -9606 285761 DCBLD1 RP1-94G16.1 dJ94G16.1 HGNC:21479|Ensembl:ENSG00000164465|HPRD:16784|Vega:OTTHUMG00000015455 6 6q22.1 discoidin, CUB and LCCL domain containing 1 protein-coding DCBLD1 discoidin, CUB and LCCL domain containing 1 O discoidin, CUB and LCCL domain-containing protein 1 20121230 -9606 285762 LOC285762 - - - 6 6q22.31 uncharacterized LOC285762 miscRNA - - - - 20121230 -9606 285766 LOC285766 - - HPRD:17346 6 6p25.3 uncharacterized LOC285766 miscRNA - - - - 20120508 -9606 285768 LOC285768 - - - 6 6p25.3 uncharacterized LOC285768 miscRNA - - - - 20121230 -9606 285778 LOC285778 - - - 6 6p25.1 uncharacterized LOC285778 protein-coding - - - - 20120508 -9606 285780 LY86-AS1 RP3-398D13.1 LY86-AS|LY86AS HGNC:26593|HPRD:08165 6 6p25.1 LY86 antisense RNA 1 miscRNA LY86-AS1 LY86 antisense RNA 1 O - 20121230 -9606 285782 CAGE1 RP11-69L16.7 CT3|CT95|CTAG3|bA69L16.7 HGNC:21622|MIM:608304|Ensembl:ENSG00000164304|HPRD:10511|Vega:OTTHUMG00000014200 6 6p24.3 cancer antigen 1 protein-coding CAGE1 cancer antigen 1 O cancer-associated gene 1 protein|cancer/testis antigen 3|cancer/testis antigen 95|cancer/testis antigen gene 1 20121230 -9606 285785 RPL39P3 - RPL39_9_712 HGNC:21383 6 6q13 ribosomal protein L39 pseudogene 3 pseudo RPL39P3 ribosomal protein L39 pseudogene 3 O - 20121230 -9606 285796 PACRG-AS1 - - HGNC:27772 6 6q26 PACRG antisense RNA 1 miscRNA PACRG-AS1 PACRG antisense RNA 1 O - 20121230 -9606 285800 PRR18 - - HGNC:28574|Ensembl:ENSG00000176381|HPRD:17533|Vega:OTTHUMG00000167034 6 6q27 proline rich 18 protein-coding PRR18 proline rich 18 O proline rich region 18|proline-rich protein 18 20121230 -9606 285804 LOC285804 - - - 6 6q27 uncharacterized LOC285804 miscRNA - - - - 20120508 -9606 285812 LOC285812 - - - 6 6p23 uncharacterized LOC285812 protein-coding - - - - 20120508 -9606 285819 LOC285819 - - - 6 6p22.1 uncharacterized LOC285819 miscRNA - - - - 20121230 -9606 285829 SUMO2P1 - SMT3Bp|SMT3H2P|SUMO2P|dJ271M21 HGNC:13985 6 6p22.1 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 1 pseudo SUMO2P1 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 1 O - 20121230 -9606 285830 HLA-F-AS1 RP3-377H14.5 - HGNC:26645|HPRD:16938 6 6p22.1 HLA-F antisense RNA 1 miscRNA HLA-F-AS1 HLA-F antisense RNA 1 O - 20121230 -9606 285834 HCG22 XXbac-BPG118E17.6 PBMUCL2 HGNC:27780|MIM:613918 6 6p21.33 HLA complex group 22 (non-protein coding) miscRNA HCG22 HLA complex group 22 (non-protein coding) O - 20121230 -9606 285835 LOC285835 - - - 6 6p21.32 uncharacterized LOC285835 protein-coding - - - - 20120508 -9606 285847 LOC285847 - - - 6 6p21.31 uncharacterized LOC285847 miscRNA - - - - 20121230 -9606 285848 PNPLA1 RP1-50J22.1 dJ50J22.1 HGNC:21246|MIM:612121|Ensembl:ENSG00000180316|HPRD:17869|Vega:OTTHUMG00000014590 6 6p21.31 patatin-like phospholipase domain containing 1 protein-coding PNPLA1 patatin-like phospholipase domain containing 1 O patatin-like phospholipase domain-containing protein 1 20121230 -9606 285849 COX6A1P2 RP3-405J24.3 - HGNC:35239 6 6p21.2 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 2 pseudo COX6A1P2 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 2 O - 20121230 -9606 285852 TREML4 UNQ9425/PRO34675 TLT-4|TLT4 HGNC:30807|MIM:614664|Ensembl:ENSG00000188056|HPRD:15548|Vega:OTTHUMG00000016408 6 6p21.1 triggering receptor expressed on myeloid cells-like 4 protein-coding TREML4 triggering receptor expressed on myeloid cells-like 4 O TREM like transcript 4|trem-like transcript 4 protein|triggering receptor expressed on myeloid cells-like protein 4 20121230 -9606 285855 RPL7L1 - dJ475N16.4 HGNC:21370|Ensembl:ENSG00000146223|HPRD:18000|Vega:OTTHUMG00000014710 6 6p21.1 ribosomal protein L7-like 1 protein-coding RPL7L1 ribosomal protein L7-like 1 O 60S ribosomal protein L7-like 1 20121230 -9606 285857 LOC285857 - - - 6 6p21.1 uncharacterized LOC285857 protein-coding - - - - 20120508 -9606 285872 THAP5P1 tcag7.565 - HGNC:22340 7 7q36.3 THAP domain containing 5 pseudogene 1 pseudo THAP5P1 THAP domain containing 5 pseudogene 1 O - 20121230 -9606 285877 POM121L12 - - HGNC:25369|Ensembl:ENSG00000221900|HPRD:13212|Vega:OTTHUMG00000155995 7 7p12.1 POM121 transmembrane nucleoporin-like 12 protein-coding POM121L12 POM121 transmembrane nucleoporin-like 12 O POM121 membrane glycoprotein-like 12|POM121-like protein 12 20121230 -9606 285878 LOC285878 - - - 7 7p11.2 uncharacterized LOC285878 miscRNA - - - - 20121230 -9606 285888 CNPY1 tcag7.570 - HGNC:27786|MIM:612493|Ensembl:ENSG00000146910|Vega:OTTHUMG00000151353 7 7q36.3 canopy 1 homolog (zebrafish) protein-coding CNPY1 canopy 1 homolog (zebrafish) O protein canopy homolog 1 20121230 -9606 285889 LOC285889 tcag7.571 - - 7 7q36.3 uncharacterized LOC285889 miscRNA - - - - 20121230 -9606 285893 ARAF3P - ARAFPS2 HGNC:35474 7 7q11.21 v-raf murine sarcoma 3611 viral oncogene homolog 3, pseudogene pseudo ARAF3P v-raf murine sarcoma 3611 viral oncogene homolog 3, pseudogene O - 20121230 -9606 285900 RPL6P20 - RPL6_6_811 HGNC:36543 7 7q11.21 ribosomal protein L6 pseudogene 20 pseudo RPL6P20 ribosomal protein L6 pseudogene 20 O - 20121230 -9606 285902 LOC285902 - - - 7 7q11.21 uncharacterized LOC285902 unknown - - - - 20120508 -9606 285905 INTS4L1 - - HGNC:21925|HPRD:08045 7 7q11.21 integrator complex subunit 4-like 1 pseudo INTS4L1 integrator complex subunit 4-like 1 O - 20121230 -9606 285908 LINC00174 - NCRNA00174 HGNC:27788|HPRD:14160 7 7q11.21 long intergenic non-protein coding RNA 174 miscRNA LINC00174 long intergenic non-protein coding RNA 174 O - 20121230 -9606 285941 C7orf71 - - HGNC:22364|Ensembl:ENSG00000222004|Vega:OTTHUMG00000152860 7 7p15.2 chromosome 7 open reading frame 71 protein-coding C7orf71 chromosome 7 open reading frame 71 O putative uncharacterized protein C7orf71 20121230 -9606 285943 HOXA-AS2 - - HGNC:43745 7 7p15.2 HOXA cluster antisense RNA 2 unknown HOXA-AS2 HOXA cluster antisense RNA 2 O - 20121230 -9606 285954 INHBA-AS1 - - HGNC:40303 7 7p14.1 INHBA antisense RNA 1 miscRNA INHBA-AS1 INHBA antisense RNA 1 O - 20121230 -9606 285955 SPDYE1 - Ringo1|SPDYE|WBSCR19 HGNC:16408|Ensembl:ENSG00000136206|HPRD:11677|Vega:OTTHUMG00000128985 7 7p13 speedy homolog E1 (Xenopus laevis) protein-coding SPDYE1 speedy homolog E1 (Xenopus laevis) O Speedy E|Williams Beuren syndrome chromosome region 19 protein|putative WBSCR19-like protein 6|speedy protein E1|williams-Beuren syndrome chromosomal region 19 protein 20121230 -9606 285957 LOC285957 - - - 7 7p13 uncharacterized LOC285957 protein-coding - - - - 20120508 -9606 285958 SNHG15 tcag7.814 C7orf40 HGNC:27797 7 7p13 small nucleolar RNA host gene 15 (non-protein coding) miscRNA SNHG15 small nucleolar RNA host gene 15 (non-protein coding) O - 20121230 -9606 285961 SEPT7L RP11-291L22.2 CDC10L|bA291L22.2 HGNC:30810 10 10p11.1 septin 7-like pseudo SEPT7L septin 7-like O - 20121230 -9606 285962 FLJ40852 - - HPRD:08286 7 7q34 uncharacterized LOC285962 miscRNA - - - - 20121230 -9606 285965 EPHA1-AS1 - - HGNC:27799 7 7q35 EPHA1 antisense RNA 1 miscRNA EPHA1-AS1 EPHA1 antisense RNA 1 O - 20121230 -9606 285966 FAM115C - FAM139A HGNC:26878|Ensembl:ENSG00000170379|HPRD:07117|Vega:OTTHUMG00000153232 7 7q35 family with sequence similarity 115, member C protein-coding FAM115C family with sequence similarity 115, member C O family with sequence similarity 139, member A|protein FAM115C 20121230 -9606 285971 ZNF775 - - HGNC:28501|Ensembl:ENSG00000196456|HPRD:14567|Vega:OTTHUMG00000158324 7 7q36.1 zinc finger protein 775 protein-coding ZNF775 zinc finger protein 775 O - 20121230 -9606 285972 LOC285972 - - - 7 7q36.1 uncharacterized LOC285972 miscRNA - - - - 20121230 -9606 285973 ATG9B - APG9L2|NOS3AS|SONE HGNC:21899|MIM:612205|HPRD:08253 7 7q36.1 autophagy related 9B protein-coding ATG9B autophagy related 9B O APG9-like 2|ATG9 autophagy related 9 homolog B|autophagy 9-like 2 protein|autophagy-related protein 9B|endothelial nitric oxide synthase antisense|nitric oxide synthase 3-overlapping antisense gene protein|protein sONE 20121230 -9606 285987 DLX6-AS1 - DLX6-AS|DLX6AS|Evf-2|NCRNA00212 HGNC:37151 7 7q21.3 DLX6 antisense RNA 1 miscRNA DLX6-AS1 DLX6 antisense RNA 1 O - 20121230 -9606 285989 ZNF789 - - HGNC:27801|Ensembl:ENSG00000198556|HPRD:14161|Vega:OTTHUMG00000154601 7 7q22.1 zinc finger protein 789 protein-coding ZNF789 zinc finger protein 789 O - 20121230 -9606 286002 SLC26A4-AS1 - - HGNC:22385 7 7q22.3 SLC26A4 antisense RNA 1 miscRNA SLC26A4-AS1 SLC26A4 antisense RNA 1 O - 20121230 -9606 286006 C7orf53 - - HGNC:22036|Ensembl:ENSG00000181016|HPRD:08258|Vega:OTTHUMG00000155190 7 7q31.1 chromosome 7 open reading frame 53 protein-coding C7orf53 chromosome 7 open reading frame 53 O coiled-coil domain-containing transmembrane protein C7orf53 20121230 -9606 286009 LOC286009 tcag7.929 - - 7 7q31.2 uncharacterized LOC286009 other - - - - 20111105 -9606 286016 TPI1P2 tcag7.1015 - HGNC:38069 7 7q32.1 triosephosphate isomerase 1 pseudogene 2 pseudo TPI1P2 triosephosphate isomerase 1 pseudogene 2 O - 20121230 -9606 286023 FLJ40288 - - HPRD:08276 7 7q32.3 uncharacterized FLJ40288 miscRNA - - - - 20121230 -9606 286042 FAM86B3P hCG_1990547 - HGNC:44371 8 8p23.1 family with sequence similarity 86, member A pseudogene pseudo FAM86B3P family with sequence similarity 86, member B3, pseudogene O - 20121230 -9606 286043 MRPS18CP2 - - HGNC:29743 8 8p23.1 mitochondrial ribosomal protein S18C pseudogene 2 pseudo MRPS18CP2 mitochondrial ribosomal protein S18C pseudogene 2 O - 20121230 -9606 286046 XKR6 hCG_1991046 C8orf21|C8orf5|C8orf7|XRG6 HGNC:27806|Ensembl:ENSG00000171044|HPRD:12926|Vega:OTTHUMG00000129351 8 8p23.1 XK, Kell blood group complex subunit-related family, member 6 protein-coding XKR6 XK, Kell blood group complex subunit-related family, member 6 O Transmembrane protein C8orf5|X Kell blood group precursor-related family, member 6|XK-related protein 6 20121230 -9606 286052 LOC286052 - - - 8 8q24.13 uncharacterized LOC286052 protein-coding - - - - 20120508 -9606 286053 NSMCE2 - C8orf36|MMS21|NSE2 HGNC:26513|Ensembl:ENSG00000156831|HPRD:08131|Vega:OTTHUMG00000164993 8 8q24.13 non-SMC element 2, MMS21 homolog (S. cerevisiae) protein-coding NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) O E3 SUMO-protein ligase NSE2|MMS21 homolog|hMMS21|methyl methanesulfonate sensitivity gene 21|non-SMC element 2 homolog|non-structural maintenance of chromosomes element 2 homolog 20121230 -9606 286058 LOC286058 - - - 8 8p21.2 uncharacterized LOC286058 protein-coding - - - - 20120508 -9606 286059 LOC286059 - - - 8 8p21.2 tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain pseudogene pseudo - - - - 20121230 -9606 286063 LOC286063 - - - 8 8q11.21 uncharacterized LOC286063 protein-coding - - - - 20120508 -9606 286065 MAPK6PS4 - Erk3ps4 HGNC:18456 8 8q11.1 mitogen-activated protein kinase 6 pseudogene 4 pseudo MAPK6PS4 mitogen-activated protein kinase 6 pseudogene 4 O - 20121230 -9606 286068 LOC286068 - - - 8 8q11.21 uncharacterized LOC286068 protein-coding - - - - 20120508 -9606 286071 LOC286071 - - - 8 8q11.22 uncharacterized LOC286071 protein-coding - - - - 20120508 -9606 286075 ZNF707 - - HGNC:27815|Ensembl:ENSG00000181135|HPRD:14162|Vega:OTTHUMG00000165146 8 8q24.3 zinc finger protein 707 protein-coding ZNF707 zinc finger protein 707 O - 20121230 -9606 286076 BREA2 - - HPRD:18592 8 8q24.3 breast cancer estrogen-induced apoptosis 2 miscRNA - - - - 20121230 -9606 286077 FAM83H - AI3 HGNC:24797|MIM:611927|Ensembl:ENSG00000180921|HPRD:13521|Vega:OTTHUMG00000133559 8 8q24.3 family with sequence similarity 83, member H protein-coding FAM83H family with sequence similarity 83, member H O FAM83H variant 1|protein FAM83H 20121230 -9606 286083 LOC286083 - - - 8 8p23.3 uncharacterized LOC286083 miscRNA - - - - 20121230 -9606 286087 LOC286087 - - - 8 8p23.2 uncharacterized LOC286087 protein-coding - - - - 20120508 -9606 286094 LOC286094 - - - 8 8q24.22 uncharacterized LOC286094 miscRNA - - - - 20121230 -9606 286097 EFHA2 - - HGNC:27820|MIM:610633|Ensembl:ENSG00000155970|HPRD:13264|Vega:OTTHUMG00000096965 8 8p22 EF-hand domain family, member A2 protein-coding EFHA2 EF-hand domain family, member A2 O EF hand domain family A2|EF hand domain family, member A2|EF-hand domain-containing family member A2 20121230 -9606 286101 ZNF252P - ZNF252 HGNC:13046 8 8q24.3 zinc finger protein 252, pseudogene pseudo ZNF252P zinc finger protein 252, pseudogene O - 20121230 -9606 286102 TMED10P1 - TMED10P|Tmp21-II HGNC:30754 8 8q24.3 transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 1 pseudo TMED10P1 transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 1 O - 20121230 -9606 286103 ZNF252P-AS1 - C8orf77 HGNC:27821 8 8q24.3 ZNF252P antisense RNA 1 miscRNA ZNF252P-AS1 ZNF252P antisense RNA 1 O - 20121230 -9606 286109 LOC286109 - - - 8 8q24.3 uncharacterized LOC286109 protein-coding - - - - 20120508 -9606 286114 LOC286114 - - - 8 8p21.3 uncharacterized LOC286114 miscRNA - - - - 20121230 -9606 286121 LOC286121 - - - 8 8q24.3 uncharacterized LOC286121 protein-coding - - - - 20120508 -9606 286122 C8orf31 - - HGNC:26731|Ensembl:ENSG00000177335|HPRD:08781|Vega:OTTHUMG00000164771 8 8q24.3 chromosome 8 open reading frame 31 protein-coding C8orf31 chromosome 8 open reading frame 31 O uncharacterized protein C8orf31 20121230 -9606 286128 ZFP41 - ZNF753 HGNC:26786|Ensembl:ENSG00000181638|HPRD:08244|Vega:OTTHUMG00000164951 8 8q24.3 ZFP41 zinc finger protein protein-coding ZFP41 ZFP41 zinc finger protein O zfp-41|zinc finger protein 41 homolog 20121230 -9606 286133 SCARA5 UNQ2938/PRO28700 NET33|Tesr HGNC:28701|MIM:611306|Ensembl:ENSG00000168079|HPRD:11356|Vega:OTTHUMG00000132172 8 8p21.1 scavenger receptor class A, member 5 (putative) protein-coding SCARA5 scavenger receptor class A, member 5 (putative) O scavenger receptor class A member 5|scavenger receptor hlg|testis expressed scavenger receptor 20121230 -9606 286135 LOC286135 - - - 8 8p12 uncharacterized LOC286135 miscRNA - - - - 20121230 -9606 286140 RNF5P1 - - HGNC:31053 8 8p11.22 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 pseudo RNF5P1 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 O - 20121230 -9606 286144 TRIQK - C8orf83|PRO0845|UPF0599 HGNC:27828|Ensembl:ENSG00000205133|Vega:OTTHUMG00000164162 8 8q22.1 triple QxxK/R motif containing protein-coding TRIQK triple QxxK/R motif containing O protein TRIQK|triple QxxK/R motif-containing protein|triple repetitive-sequence of QXXK/R protein homolog 20121230 -9606 286148 DPY19L4 - - HGNC:27829|MIM:613895|Ensembl:ENSG00000156162|HPRD:11259|Vega:OTTHUMG00000164589 8 8q22.1 dpy-19-like 4 (C. elegans) protein-coding DPY19L4 dpy-19-like 4 (C. elegans) O dpy-19-like protein 4|protein dpy-19 homolog 4 20121230 -9606 286149 LOC286149 - - - 8 8q22.1 uncharacterized LOC286149 unknown - - - - 20121230 -9606 286150 RPS2P33 - RPS2_11_929 HGNC:35549 8 8q22.1 ribosomal protein S2 pseudogene 33 pseudo RPS2P33 ribosomal protein S2 pseudogene 33 O - 20121230 -9606 286151 FBXO43 - EMI2|ERP1|FBX43 HGNC:28521|MIM:609110|Ensembl:ENSG00000156509|HPRD:18777|Vega:OTTHUMG00000164803 8 8q22.2 F-box protein 43 protein-coding FBXO43 F-box protein 43 O F-box only protein 43|early mitotic inhibitor 2|endogenous meiotic inhibitor 2 20121230 -9606 286154 LOC286154 - - - 8 8q22.3 uncharacterized LOC286154 protein-coding - - - - 20120508 -9606 286156 MAPK6PS5 - - HGNC:18979 8 8q23.1 mitogen-activated protein kinase 6 pseudogene 5 pseudo MAPK6PS5 mitogen-activated protein kinase 6 pseudogene 5 O - 20121230 -9606 286157 PCBP2P2 - - HGNC:8650 8 8q21-q22 poly(rC) binding protein 2 pseudogene 2 pseudo PCBP2P2 poly(rC) binding protein 2 pseudogene 2 O - 20121230 -9606 286161 LOC286161 - - - 8 8p23.3 uncharacterized LOC286161 unknown - - - - 20120508 -9606 286177 LOC286177 - - - 8 8q12.1 uncharacterized LOC286177 miscRNA - - - - 20121230 -9606 286178 LOC286178 - - - 8 8q12.1 uncharacterized LOC286178 unknown - - - - 20121230 -9606 286183 NKAIN3 - FAM77D HGNC:26829|MIM:612872|Ensembl:ENSG00000185942|HPRD:08261|Vega:OTTHUMG00000164361 8 8q12.3 Na+/K+ transporting ATPase interacting 3 protein-coding NKAIN3 Na+/K+ transporting ATPase interacting 3 O Na(+)/K(+)-transporting ATPase subunit beta-1-interacting protein 3|family with sequence similarity 77, member D|sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3 20121230 -9606 286184 LOC286184 - - - 8 8q12.3 uncharacterized LOC286184 miscRNA - - - - 20121230 -9606 286186 LOC286186 - - - 8 8q13.1 uncharacterized LOC286186 miscRNA - - - - 20121230 -9606 286187 PPP1R42 - LRRC67|TLLR|dtr HGNC:33732|Ensembl:ENSG00000178125|HPRD:14573|Vega:OTTHUMG00000164745 8 8q13.1 protein phosphatase 1, regulatory subunit 42 protein-coding PPP1R42 protein phosphatase 1, regulatory subunit 42 O leucine rich repeat containing 67|leucine-rich repeat-containing protein 67|protein phosphatase 1 regulatory subunit 42|testis leucine-rich repeat 20121230 -9606 286189 LOC286189 - - - 8 8q13.1 uncharacterized LOC286189 miscRNA - - - - 20121230 -9606 286190 LOC286190 - - - 8 8q13.2 uncharacterized LOC286190 miscRNA - - - - 20121230 -9606 286191 LOC286191 - - - 8 8q13.3 uncharacterized LOC286191 protein-coding - - - - 20120508 -9606 286204 CRB2 RP11-230L22.2 - HGNC:18688|MIM:609720|Ensembl:ENSG00000148204|HPRD:13093|Vega:OTTHUMG00000020638 9 9q33.3 crumbs homolog 2 (Drosophila) protein-coding CRB2 crumbs homolog 2 (Drosophila) O crumbs homolog 2|crumbs-like protein 2 20121230 -9606 286205 SCAI - C9orf126|NET40 HGNC:26709|Ensembl:ENSG00000173611|HPRD:12941|Vega:OTTHUMG00000020667 9 9q33.3 suppressor of cancer cell invasion protein-coding SCAI suppressor of cancer cell invasion O protein SCAI|suppressor of cancer cell invasion protein 20121230 -9606 286207 C9orf117 RP11-56D16.5 - HGNC:27843|Ensembl:ENSG00000160401|HPRD:16673|Vega:OTTHUMG00000020709 9 9q34.11 chromosome 9 open reading frame 117 protein-coding C9orf117 chromosome 9 open reading frame 117 O uncharacterized protein C9orf117 20121230 -9606 286223 C9orf47 - C9orf108|bA791O21.3 HGNC:23669|Ensembl:ENSG00000186354|HPRD:12962|Vega:OTTHUMG00000020172 9 9q22.1 chromosome 9 open reading frame 47 protein-coding C9orf47 chromosome 9 open reading frame 47 O uncharacterized protein C9orf47 20121230 -9606 286234 SPATA31E1 - C9orf79|FAM75E1 HGNC:26672|Ensembl:ENSG00000177992|HPRD:12979|Vega:OTTHUMG00000020157 9 9q22.1 SPATA31 subfamily E, member 1 protein-coding SPATA31E1 SPATA31 subfamily E, member 1 O FAM75-like protein C9orf79|XXyac-YM21GA2.5|family with sequence similarity 75, member E1|protein FAM75E1 20121230 -9606 286238 LOC286238 - - - 9 9q22.1 uncharacterized LOC286238 protein-coding - - - uncharacterized protein LOC286238 20121230 -9606 286239 LOC286239 - - - 9 9p21.1 malic enzyme 2, NAD(+)-dependent, mitochondrial pseudogene pseudo - - - - 20121230 -9606 286254 LOC286254 - - - 9 9q34.3 uncharacterized LOC286254 protein-coding - - - - 20120508 -9606 286256 LCN12 RP11-229P13.4 - HGNC:28733|MIM:612905|Ensembl:ENSG00000184925|HPRD:13978|Vega:OTTHUMG00000020968 9 9q34.3 lipocalin 12 protein-coding LCN12 lipocalin 12 O epididymal-specific lipocalin-12|lipocalcin 12 20121230 -9606 286257 C9orf142 - - HGNC:27849|Ensembl:ENSG00000148362|HPRD:14163|Vega:OTTHUMG00000020971 9 9q34.3 chromosome 9 open reading frame 142 protein-coding C9orf142 chromosome 9 open reading frame 142 O uncharacterized protein C9orf142 20121230 -9606 286262 TPRN - C9orf75|DFNB79|RP11-350O14.7 HGNC:26894|MIM:613354|Ensembl:ENSG00000176058|HPRD:12977|Vega:OTTHUMG00000020984 9 9q34.3 taperin protein-coding TPRN taperin O - 20121230 -9606 286272 LOC286272 - - - 9 9q12 uncharacterized LOC286272 protein-coding - - - - 20120508 -9606 286297 LOC286297 - - - 9 9q12 uncharacterized LOC286297 miscRNA - - - - 20121230 -9606 286310 LCN1P1 RP11-430N14.1 LCN1L1|bA430N14.2 HGNC:23412 9 9q34.2 lipocalin 1 pseudogene 1 pseudo LCN1P1 lipocalin 1 pseudogene 1 O - 20121230 -9606 286319 TUSC1 - TSG-9|TSG9 HGNC:31010|MIM:610529|Ensembl:ENSG00000198680|HPRD:18247|Vega:OTTHUMG00000159591 9 9p21.2 tumor suppressor candidate 1 protein-coding TUSC1 tumor suppressor candidate 1 O tumor suppressor candidate gene 1 protein 20121230 -9606 286333 FAM225A - C9orf109|LINC00256A|NCRNA00256A HGNC:27855 9 9q32 family with sequence similarity 225, member A (non-protein coding) miscRNA FAM225A family with sequence similarity 225, member A (non-protein coding) O - 20121230 -9606 286336 FAM78A RP11-544A12.6 C9orf59 HGNC:25465|Ensembl:ENSG00000126882|HPRD:12968|Vega:OTTHUMG00000020821 9 9q34 family with sequence similarity 78, member A protein-coding FAM78A family with sequence similarity 78, member A O protein FAM78A 20121230 -9606 286343 LURAP1L HYST0841 C9orf150|bA3L8.2 HGNC:31452|Ensembl:ENSG00000153714|HPRD:12944|Vega:OTTHUMG00000019557 9 9p23 leucine rich adaptor protein 1-like protein-coding LURAP1L leucine rich adaptor protein 1-like O - 20121230 -9606 286348 RPL7P33 - RPL7_16_965 HGNC:35937 9 9p22.3 ribosomal protein L7 pseudogene 33 pseudo RPL7P33 ribosomal protein L7 pseudogene 33 O - 20121230 -9606 286359 LOC286359 hCG_2045089 - - 9 9q22.33 uncharacterized LOC286359 miscRNA - - - - 20121230 -9606 286362 OR13C9 - OR37L|OR9-13 HGNC:15104|Ensembl:ENSG00000136839|HPRD:14909|Vega:OTTHUMG00000020416 9 9q31.1 olfactory receptor, family 13, subfamily C, member 9 protein-coding OR13C9 olfactory receptor, family 13, subfamily C, member 9 O olfactory receptor 13C9|olfactory receptor OR9-13 20121230 -9606 286365 OR13D1 - OR9-15 HGNC:14695|Ensembl:ENSG00000179055|HPRD:14910|Vega:OTTHUMG00000020412 9 9q31.1 olfactory receptor, family 13, subfamily D, member 1 protein-coding OR13D1 olfactory receptor, family 13, subfamily D, member 1 O olfactory receptor 13D1|olfactory receptor OR9-15 20121230 -9606 286367 LOC286367 - - - 9 9q31.1 FP944 miscRNA - - - - 20121230 -9606 286370 LOC286370 - - - 9 9q22.2 uncharacterized LOC286370 miscRNA - - - - 20121230 -9606 286380 FOXD4L3 RP11-561O23.3 FOXD4L2|FOXD6 HGNC:18523|MIM:611086|Ensembl:ENSG00000187559|HPRD:17011|Vega:OTTHUMG00000019959 9 9q21.11 forkhead box D4-like 3 protein-coding FOXD4L3 forkhead box D4-like 3 O FOXD4-like 2|FOXD4-like 3|Forkhead box protein D4-like 3|forkhead box D4 like 3|forkhead box protein D4-like 2 20121230 -9606 286382 LOC286382 - - - 9 9q21.13 uncharacterized LOC286382 protein-coding - - - - 20120508 -9606 286410 ATP11C RP11-197K18.1 ATPIG|ATPIQ HGNC:13554|MIM:300516|Ensembl:ENSG00000101974|HPRD:09814|Vega:OTTHUMG00000022538 X Xq27.1 ATPase, class VI, type 11C protein-coding ATP11C ATPase, class VI, type 11C O phospholipid-transporting ATPase IG|probable phospholipid-transporting ATPase IG 20121230 -9606 286411 RP1-177G6.2 RP1-177G6.2 - - X Xq27.1 uncharacterized LOC286411 miscRNA - - - - 20121230 -9606 286423 MRRFP1 RP1-57A13.2 MRRFP HGNC:35238 X Xq25 mitochondrial ribosome recycling factor pseudogene 1 pseudo MRRFP1 mitochondrial ribosome recycling factor pseudogene 1 O - 20121230 -9606 286430 NLRP2P - NALP2P|NOD24 HGNC:29887 X Xp11.21 NLR family, pyrin domain containing 2 pseudogene pseudo NLRP2P NLR family, pyrin domain containing 2 pseudogene O - 20121230 -9606 286436 H2BFM LL0XNC01-240C2.2 - HGNC:27867|Ensembl:ENSG00000101812|Vega:OTTHUMG00000022122 X Xq22.2 H2B histone family, member M protein-coding H2BFM H2B histone family, member M O H2B/s|histone H2B type F-M|histone H2B.s 20121230 -9606 286437 LOC286437 - - - X Xq22.2 uncharacterized LOC286437 miscRNA - - - - 20121230 -9606 286442 LOC286442 - - - X Xp11.4 uncharacterized LOC286442 miscRNA - - - - 20121230 -9606 286444 RPS2P55 - RPS2_29_1773 HGNC:36140 X Xp11.4 ribosomal protein S2 pseudogene 55 pseudo RPS2P55 ribosomal protein S2 pseudogene 55 O - 20121230 -9606 286451 YIPF6 RP13-253K9.1 FinGER6 HGNC:28304|Ensembl:ENSG00000181704|HPRD:06639|Vega:OTTHUMG00000021745 X Xq12 Yip1 domain family, member 6 protein-coding YIPF6 Yip1 domain family, member 6 O YIP1 family member 6|protein YIPF6 20121230 -9606 286453 LOC286453 - - HPRD:18368 X Xq22.1 chondroitin sulfate N-acetylgalactosaminyltransferase 2 pseudogene pseudo - - - - 20121230 -9606 286456 LOC286456 - - - X Xq28 NGFI-A binding protein 1 (EGR1 binding protein 1) pseudogene pseudo - - - - 20121230 -9606 286460 FAM3C2 - - HGNC:34501 X Xp22.11 FAM3C pseudogene pseudo FAM3C2 family with sequence similarity 3, member C2 (pseudogene) O - 20121230 -9606 286463 LOC286463 - - - X Xp21.3 ferritin, light polypeptide pseudogene pseudo - - - - 20100721 -9606 286464 CHDC2 RP13-11B7.1 CXorf59 HGNC:26708|Ensembl:ENSG00000176034|HPRD:06561|Vega:OTTHUMG00000021351 X Xp21.1 calponin homology domain containing 2 protein-coding CHDC2 calponin homology domain containing 2 O uncharacterized protein CXorf59 20121230 -9606 286467 LOC286467 - - - X Xq26.2 family with sequence similarity 195, member A pseudogene pseudo - - - - 20121230 -9606 286472 RAC1P4 - Psi4Rac1|RAC4 HGNC:31113 X Xq26.3 ras-related C3 botulinum toxin substrate 1 pseudogene 4 pseudo RAC1P4 ras-related C3 botulinum toxin substrate 1 pseudogene 4 O - 20121230 -9606 286480 UBE2E4P - UbcM2 HGNC:32199 X Xp22.2 ubiquitin-conjugating enzyme E2E 4 pseudogene pseudo UBE2E4P ubiquitin-conjugating enzyme E2E 4 pseudogene O - 20121230 -9606 286494 BRAFP1 - BRAF2|BRAFPS2 HGNC:18615 X Xq13.3 v-raf murine sarcoma viral oncogene homolog B1 pseudogene 1 pseudo BRAFP1 v-raf murine sarcoma viral oncogene homolog B1 pseudogene 1 O - 20121230 -9606 286495 TTC3P1 - RNF105L|TTC3L HGNC:23318 X Xq13.3 tetratricopeptide repeat domain 3 pseudogene 1 pseudo TTC3P1 tetratricopeptide repeat domain 3 pseudogene 1 O - 20121230 -9606 286499 FAM133A RP1-32F7.2 CT115 HGNC:26748|Ensembl:ENSG00000179083|HPRD:06562|Vega:OTTHUMG00000021975 X Xq21.32 family with sequence similarity 133, member A protein-coding FAM133A family with sequence similarity 133, member A O cancer/testis antigen 115|protein FAM133A 20121230 -9606 286512 LOC286512 - - - X Xp11.22 eukaryotic translation initiation factor 4A2 pseudogene pseudo - - - - 20121230 -9606 286514 MAGEB18 - - HGNC:28515|Ensembl:ENSG00000176774|HPRD:06647|Vega:OTTHUMG00000021282 X Xp21.3 melanoma antigen family B, 18 protein-coding MAGEB18 melanoma antigen family B, 18 O MAGE-B18 antigen|melanoma-associated antigen B18 20121230 -9606 286527 TMSB15B - Tbeta15b HGNC:28612|Ensembl:ENSG00000158427|HPRD:17546|Vega:OTTHUMG00000022117 X Xq22.2 thymosin beta 15B protein-coding TMSB15B thymosin beta 15B O thymosin beta-15B 20121230 -9606 286528 SSU72P1 - - HGNC:43620 X Xq23 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 1 pseudo SSU72P1 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 286530 P2RY8 RP11-261P4.4 P2Y8 HGNC:15524|MIM:300525|Ensembl:ENSG00000182162|HPRD:06671|Vega:OTTHUMG00000021060 X|Y Xp22.33; Yp11.3 purinergic receptor P2Y, G-protein coupled, 8 protein-coding P2RY8 purinergic receptor P2Y, G-protein coupled, 8 O G-protein coupled purinergic receptor P2Y8|P2Y purinoceptor 8 20121230 -9606 286544 MXRA5P1 - ADLICANP|MXRA5P HGNC:23932 Y Yq11.21 matrix-remodelling associated 5 pseudogene 1 pseudo MXRA5P1 matrix-remodelling associated 5 pseudogene 1 O - 20121230 -9606 286550 CYCSP46 - HCP46|HCP47 HGNC:23941 Y Yq11.221 cytochrome c, somatic pseudogene 46 pseudo CYCSP46 cytochrome c, somatic pseudogene 46 O - 20121230 -9606 286554 BCORP1 - BCORL2 HGNC:23953|HPRD:08266 Y Yq11.222 BCL6 corepressor pseudogene 1 pseudo BCORP1 BCL6 corepressor pseudogene 1 O putative BCoR-like protein 2 20121230 -9606 286555 TBL1YP1 - TBL1YP HGNC:23979 Y Yq11.223 transducin (beta)-like 1, Y-linked pseudogene 1 pseudo TBL1YP1 transducin (beta)-like 1, Y-linked pseudogene 1 O - 20121230 -9606 286556 CDY3P - - HGNC:23849 Y Yp11.2 chromodomain protein, Y-linked 3 pseudogene pseudo CDY3P chromodomain protein, Y-linked 3 pseudogene O - 20121230 -9606 286557 RBMY1A3P - - HGNC:18849 Y Yp11.2 RNA binding motif protein, Y-linked, family 1, member A3 pseudogene pseudo RBMY1A3P RNA binding motif protein, Y-linked, family 1, member A3 pseudogene O - 20121230 -9606 286568 RPL41P6 - - HGNC:37655 Y Yq11.23 ribosomal protein L41 pseudogene 6 pseudo RPL41P6 ribosomal protein L41 pseudogene 6 O - 20121209 -9606 286570 RPL41P7 - - HGNC:37656 Y Yq11.23 ribosomal protein L41 pseudogene 7 pseudo RPL41P7 ribosomal protein L41 pseudogene 7 O - 20121209 -9606 286573 TPTE2P4 - TPTEP HGNC:38077 Y Yq11.23 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 4 pseudo TPTE2P4 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 4 O - 20121209 -9606 286676 ILDR1 - DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta HGNC:28741|MIM:609739|Ensembl:ENSG00000145103|HPRD:13735|Vega:OTTHUMG00000159481 3 3q13.33 immunoglobulin-like domain containing receptor 1 protein-coding ILDR1 immunoglobulin-like domain containing receptor 1 O immunoglobulin-like domain-containing receptor 1|immunoglobulin-like domain-containing receptor 1 alpha|immunoglobulin-like domain-containing receptor 1 beta 20121230 -9606 286749 STON1-GTF2A1L - SALF HGNC:30651|Ensembl:ENSG00000068781|HPRD:18496|Vega:OTTHUMG00000152037 2 2p16.3 STON1-GTF2A1L readthrough protein-coding STON1-GTF2A1L STON1-GTF2A1L readthrough O STON1-GTF2A1L protein|stoned B/TFIIA-alpha/beta-like factor 20121230 -9606 286751 OTSC4 - - HGNC:19981|MIM:611571 16 16q21-q23.2 otosclerosis 4 unknown OTSC4 otosclerosis 4 O - 20120622 -9606 286753 TUSC5 - DSPB1|IFITMD3|LOST1 HGNC:29592|MIM:612211|Ensembl:ENSG00000184811|HPRD:18248|Vega:OTTHUMG00000132196 17 17p13.3 tumor suppressor candidate 5 protein-coding TUSC5 tumor suppressor candidate 5 O dispanin subfamily B member 1|interferon induced transmembrane protein domain containing 3|interferon-induced transmembrane domain-containing protein D3|located at seventeen p thirteen point three 1|protein located at seventeen-p-thirteen point three 1 20121230 -9606 286754 LEFTY3 - - - 1 1q42.1 left-right determination factor 2 pseudogene pseudo - - - - 20121230 -9606 286756 SCAMPER - - - - - sphingolipid Ca2+ release mediating protein of endoplasmic reticulum unknown - - - - 20120710 -9606 286826 LIN9 - BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 HGNC:30830|MIM:609375|Ensembl:ENSG00000183814|HPRD:13990|Vega:OTTHUMG00000037557 1 1q42.12 lin-9 homolog (C. elegans) protein-coding LIN9 lin-9 homolog (C. elegans) O TUDOR gene similar protein|beta subunit-associated regulator of apoptosis|pRB-associated protein|protein lin-9 homolog|rb related pathway actor|type I interferon receptor beta chain-associated protein 20121230 -9606 286827 TRIM59 - MRF1|RNF104|TRIM57|TSBF1 HGNC:30834|Ensembl:ENSG00000213186|HPRD:15568|Vega:OTTHUMG00000159034 3 3q25.33 tripartite motif containing 59 protein-coding TRIM59 tripartite motif containing 59 O RING finger protein 104|tripartite motif-containing 57|tripartite motif-containing 59|tripartite motif-containing protein 59|tumor suppressor TSBF-1|tumor suppressor TSBF1 20121230 -9606 286828 CSN1S2AP - CSN1S2A HGNC:20230 4 4q13.3 casein alpha s2-like A, pseudogene pseudo CSN1S2AP casein alpha s2-like A, pseudogene O - 20121230 -9606 286887 KRT6C - K6E|KRT6E HGNC:20406|MIM:612315|Ensembl:ENSG00000170465|HPRD:17247|Vega:OTTHUMG00000169596 12 12q13.13 keratin 6C protein-coding KRT6C keratin 6C O CK-6C|CK-6E|K6C|cytokeratin-6C|cytokeratin-6E|keratin 6E|keratin K6h|keratin, type II cytoskeletal 6C|keratin-6C|type-II keratin Kb12 20121230 -9606 286967 FAM223B - CXorf52|CXorf52B|LINC00204B|NCRNA00204B HGNC:34048|HPRD:06724 X Xq28 family with sequence similarity 223, member B (non-protein coding) miscRNA FAM223B family with sequence similarity 223, member B (non-protein coding) O - 20121230 -9606 287015 TRIM42 - PPP1R40 HGNC:19014|Ensembl:ENSG00000155890|HPRD:15559|Vega:OTTHUMG00000160170 3 3q23 tripartite motif containing 42 protein-coding TRIM42 tripartite motif containing 42 O protein phosphatase 1, regulatory subunit 40|tripartite motif-containing 42|tripartite motif-containing protein 42 20121230 -9606 317647 FLJ11857 - - - 2 2q21 uncharacterized protein FLJ11857 protein-coding - - - - 20111025 -9606 317648 NOP14-AS1 - C4orf10|RES4-24 HGNC:20205 4 4p16.3 NOP14 antisense RNA 1 miscRNA NOP14-AS1 NOP14 antisense RNA 1 O - 20121230 -9606 317649 EIF4E3 - - HGNC:31837|MIM:609896|Ensembl:ENSG00000163412|HPRD:10687|Vega:OTTHUMG00000158797 3 3p14 eukaryotic translation initiation factor 4E family member 3 protein-coding EIF4E3 eukaryotic translation initiation factor 4E family member 3 O eIF-4E type 3|eIF-4E3|eIF4E type 3|eIF4E-3|eukaryotic translation initiation factor 4E member 3|eukaryotic translation initiation factor 4E type 3 20121230 -9606 317662 FAM149B1 - KIAA0974 HGNC:29162|Ensembl:ENSG00000138286|Vega:OTTHUMG00000067794 10 10q22.2 family with sequence similarity 149, member B1 protein-coding FAM149B1 family with sequence similarity 149, member B1 O protein FAM149B1 20121230 -9606 317664 DFNA49 - - HGNC:18820|MIM:608372 1 1q21-q23 deafness, autosomal dominant 49 unknown DFNA49 deafness, autosomal dominant 49 O - 20120622 -9606 317668 MCDR3 - - HGNC:20206|MIM:608850 5 5p15.33-p13.1 macular dystrophy, retinal 3 unknown MCDR3 macular dystrophy, retinal 3 O - 20120622 -9606 317669 IBD9 - - HGNC:20236|MIM:608448 3 3p26 inflammatory bowel disease 9 unknown IBD9 inflammatory bowel disease 9 O - 20120622 -9606 317671 RFESD - - HGNC:29587|Ensembl:ENSG00000175449|HPRD:14164|Vega:OTTHUMG00000121168 5 5q15 Rieske (Fe-S) domain containing protein-coding RFESD Rieske (Fe-S) domain containing O Rieske domain-containing protein 20121230 -9606 317682 OTSC5 - - HGNC:20238|MIM:608787 3 3q22.1-q24 otosclerosis 5 unknown OTSC5 otosclerosis 5 O - 20120622 -9606 317684 MAPK6PS3 - - HGNC:18977 13 13q14.13 mitogen-activated protein kinase 6 pseudogene 3 pseudo MAPK6PS3 mitogen-activated protein kinase 6 pseudogene 3 O - 20121230 -9606 317685 NYS4 - - HGNC:19188|MIM:193003 13 13q31-q33 nystagmus 4, congenital autosomal dominant unknown NYS4 nystagmus 4, congenital autosomal dominant O - 20120622 -9606 317686 MAPK6PS1 - Erk3ps1 HGNC:18980 8 8q11.23 mitogen-activated protein kinase 6 pseudogene 1 pseudo MAPK6PS1 mitogen-activated protein kinase 6 pseudogene 1 O - 20121230 -9606 317687 BANF1P1 - BCRG1|BCRP1|D14S1460|D14S1460E HGNC:20252 14 14q24.1 barrier to autointegration factor 1 pseudogene 1 pseudo BANF1P1 barrier to autointegration factor 1 pseudogene 1 O - 20121230 -9606 317691 VN1R9P - VN1R22-1P HGNC:20257 22 22q11.1 vomeronasal 1 receptor 9 pseudogene pseudo VN1R9P vomeronasal 1 receptor 9 pseudogene O - 20121230 -9606 317701 VN1R2 - V1RL2 HGNC:19872|Ensembl:ENSG00000196131|HPRD:18286 19 19q13.42 vomeronasal 1 receptor 2 protein-coding VN1R2 vomeronasal 1 receptor 2 O G-protein coupled receptor GPCR25|V1R-like 2|V1r-like receptor 2|hGPCR25|pheromone receptor|vomeronasal type-1 receptor 2 20121230 -9606 317702 VN1R3 FKSG46 V1RL3|V1RL3p HGNC:19867 16 16p11.2 vomeronasal 1 receptor 3 (gene/pseudogene) pseudo VN1R3 vomeronasal 1 receptor 3 (gene/pseudogene) O - 20121230 -9606 317703 VN1R4 - V1RL4 HGNC:19871|Ensembl:ENSG00000228567|HPRD:18287 19 19q13.42 vomeronasal 1 receptor 4 protein-coding VN1R4 vomeronasal 1 receptor 4 O G-protein coupled receptor GPCR27|V1R-like 4|V1r-like receptor 4|hGPCR27|pheromone receptor|vomeronasal type-1 receptor 4 20121230 -9606 317705 VN1R5 - V1RL5 HGNC:19870|HPRD:18288 1 1q44 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding VN1R5 vomeronasal 1 receptor 5 (gene/pseudogene) O G-protein coupled receptor GPCR26|V1R-like 5|V1r-like receptor 5|hGPCR26|pheromone receptor|vomeronasal type-1 receptor 5 20121230 -9606 317714 DYT15 - - HGNC:31376|MIM:607488 18 18p11 dystonia 15, myoclonic unknown DYT15 dystonia 15, myoclonic O - 20120622 -9606 317716 BPIFA4P RP11-49G10.8 BASE HGNC:20469|MIM:607627|HPRD:06359 20 20q11.21 BPI fold containing family A, member 4, pseudogene pseudo BPIFA4P BPI fold containing family A, member 4, pseudogene O - 20121230 -9606 317718 DFNA37 - - HGNC:18545 1 1p21 deafness, autosomal dominant 37 unknown DFNA37 deafness, autosomal dominant 37 O - 20110215 -9606 317719 KLHL10 - - HGNC:18829|MIM:608778|Ensembl:ENSG00000161594|HPRD:12296|Vega:OTTHUMG00000152510 17 17q21.2 kelch-like 10 (Drosophila) protein-coding KLHL10 kelch-like 10 (Drosophila) O kelch-like protein 10 20121230 -9606 317726 HMGN2P2 - HMGN2L2 HGNC:20016 14 14q31.1 high mobility group nucleosomal binding domain 2 pseudogene 2 pseudo HMGN2P2 high mobility group nucleosomal binding domain 2 pseudogene 2 O - 20121230 -9606 317727 LOC317727 - - - 7 7p21 ataxin 2 related protein pseudogene pseudo - - - - 20121230 -9606 317729 BLZF2P - - HGNC:20049 14 14q24.1 basic leucine zipper nuclear factor 2 pseudogene pseudo BLZF2P basic leucine zipper nuclear factor 2 pseudogene O - 20121230 -9606 317730 C14orf99 - - - 14 14q32.33 uncharacterized LOC317730 unknown - - - - 20121230 -9606 317749 DHRS4L2 - SDR25C3 HGNC:19731|Ensembl:ENSG00000187630|HPRD:10880|Vega:OTTHUMG00000028778 14 14q11.2 dehydrogenase/reductase (SDR family) member 4 like 2 protein-coding DHRS4L2 dehydrogenase/reductase (SDR family) member 4 like 2 O dehydrogenase/reductase (SDR family) member 4 like 2A3|dehydrogenase/reductase SDR family member 4-like 2|short chain dehydrogenase/reductase family 25C, member 3 20121230 -9606 317751 MESTIT1 - MEST-AS1|MEST-IT|MEST-IT1|NCRNA00040|PEG1-AS HGNC:17991|MIM:607794 7 7q32.2 MEST intronic transcript 1, antisense RNA miscRNA MESTIT1 MEST intronic transcript 1, antisense RNA O - 20121230 -9606 317753 PSMD12P - - HGNC:30153 3 3p14 proteasome 26S subunit, non-ATPase, 12 pseudogene pseudo PSMD12P proteasome 26S subunit, non-ATPase, 12 pseudogene O - 20121230 -9606 317754 POTED - A26B3|ANKRD21|CT104.1|POTE|POTE-21|POTE21 HGNC:23822|MIM:607549|HPRD:09612 21 21q11.2 POTE ankyrin domain family, member D protein-coding POTED POTE ankyrin domain family, member D O ANKRD26-like family B member 3|ANKRD26-like family B, member 3|Expressed in prostate, ovary, testis, and placenta|POTE ankyrin domain family member D|ankyrin repeat domain 21|ankyrin repeat domain-containing protein 21|cancer/testis antigen family 104, member 1|prostate, ovary, testis-expressed protein 20121209 -9606 317760 ADAM20P1 - C14orf55 HGNC:20102 14 14q24.2 ADAM metallopeptidase domain 20 pseudogene 1 pseudo ADAM20P1 ADAM metallopeptidase domain 20 pseudogene 1 O - 20121230 -9606 317761 C14orf39 - Six6os1 HGNC:19849|Ensembl:ENSG00000179008|HPRD:08504|Vega:OTTHUMG00000140332 14 14q23.1 chromosome 14 open reading frame 39 protein-coding C14orf39 chromosome 14 open reading frame 39 O protein SIX6OS1|six6 opposite strand transcript 1 20121230 -9606 317762 CCDC85C hCG_2030155 - HGNC:35459|Ensembl:ENSG00000205476|Vega:OTTHUMG00000171506 14 14q32.31 coiled-coil domain containing 85C protein-coding CCDC85C coiled-coil domain containing 85C O coiled-coil domain-containing protein 85C 20121230 -9606 317767 SCOCP1 - - HGNC:20339 14 - short coiled-coil protein pseudogene 1 pseudo SCOCP1 short coiled-coil protein pseudogene 1 O - 20121230 -9606 317768 HOMER2P1 - - HGNC:20336 14 - homer homolog 2 (Drosophila) pseudogene 1 pseudo HOMER2P1 homer homolog 2 (Drosophila) pseudogene 1 O - 20121230 -9606 317769 HOMER2P2 - - HGNC:20334 14 - homer homolog 2 (Drosophila) pseudogene 2 pseudo HOMER2P2 homer homolog 2 (Drosophila) pseudogene 2 O - 20121230 -9606 317772 HIST2H2AB - - HGNC:20508|Ensembl:ENSG00000184270|HPRD:13659|Vega:OTTHUMG00000012085 1 1q21 histone cluster 2, H2ab protein-coding HIST2H2AB histone cluster 2, H2ab O histone 2, H2ab|histone H2A type 2-B 20121230 -9606 317773 MGR - FHM3|MGR6 MIM:607516 1 1q31 Migraine, several forms unknown - - - - 20120622 -9606 317774 SEPT7P1 - CDC10P HGNC:19926 14 14q13.2 septin 7 pseudogene 1 pseudo SEPT7P1 septin 7 pseudogene 1 O - 20121230 -9606 317775 CHORDC2P - - HGNC:20050 14 14q32.11 cysteine and histidine-rich domain (CHORD) containing 2 pseudogene pseudo CHORDC2P cysteine and histidine-rich domain (CHORD) containing 2 pseudogene O - 20121230 -9606 317778 SYF2P1 - CBPINP|SYF2P HGNC:19925 14 14q12 SYF2 homolog, RNA splicing factor (S. cerevisiae) pseudogene 1 pseudo SYF2P1 SYF2 homolog, RNA splicing factor (S. cerevisiae) pseudogene 1 O - 20121230 -9606 317780 CKS1BP1 - CKS1BP HGNC:20004 14 14q32.2 CDC28 protein kinase regulatory subunit 1B pseudogene 1 pseudo CKS1BP1 CDC28 protein kinase regulatory subunit 1B pseudogene 1 O - 20121230 -9606 317781 DDX51 - - HGNC:20082|Ensembl:ENSG00000185163|HPRD:10865|Vega:OTTHUMG00000168254 12 12q24.33 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 protein-coding DDX51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 O ATP-dependent RNA helicase DDX51|DEAD box protein 51 20121230 -9606 317782 CELIAC2 - CD|GSE HGNC:19378|MIM:609754 5 5q31-q33 celiac disease 2 unknown CELIAC2 celiac disease 2 O - 20120622 -9606 317784 COILP1 - COILP HGNC:19927 14 14q21.1 coilin pseudogene 1 pseudo COILP1 coilin pseudogene 1 O - 20121230 -9606 319085 ITPK1-AS1 - C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203 HGNC:20132 14 14q32.12 ITPK1 antisense RNA 1 miscRNA ITPK1-AS1 ITPK1 antisense RNA 1 O - 20121230 -9606 319087 COX5AP2 - - HGNC:20005 14 14q22.1 cytochrome c oxidase subunit Va pseudogene 2 pseudo COX5AP2 cytochrome c oxidase subunit Va pseudogene 2 O - 20121230 -9606 319089 TTC6 hCG_20713 C14orf25|NCRNA00291 HGNC:19739 14 14q21.1 tetratricopeptide repeat domain 6 protein-coding TTC6 tetratricopeptide repeat domain 6 O TPR repeat protein 6|tetratricopeptide repeat protein 6 20121230 -9606 319090 OTSC6 - - HGNC:20375 - - otosclerosis 6 unknown OTSC6 otosclerosis 6 O - 20110215 -9606 319093 RHOQP1 - ARHQP|RHOQP HGNC:20003 14 14q21.3 ras homolog family member Q pseudogene 1 pseudo RHOQP1 ras homolog family member Q pseudogene 1 O - 20121230 -9606 319098 COX7A2P1 - COX7A3P|COX7AP1 HGNC:20006 14 14q24.1 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) pseudogene 1 pseudo COX7A2P1 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) pseudogene 1 O - 20121230 -9606 319099 DDX18P1 - - HGNC:20007 14 14q24.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 1 pseudo DDX18P1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 1 O - 20121230 -9606 319100 TAAR6 - RP11-295F4.3|TA4|TAR4|TAR6|TRAR4|taR-4|taR-6 HGNC:20978|MIM:608923|Ensembl:ENSG00000146383|HPRD:16404|Vega:OTTHUMG00000015579 6 6q23.2 trace amine associated receptor 6 protein-coding TAAR6 trace amine associated receptor 6 O trace amine receptor 4|trace amine receptor 6|trace amine-associated receptor 6 20121230 -9606 319101 KRT73 - IRT6IRS3|K6IRS3|KRT6IRS3 HGNC:28928|MIM:608247|Ensembl:ENSG00000186049|HPRD:16304|Vega:OTTHUMG00000169746 12 12q13.3 keratin 73 protein-coding KRT73 keratin 73 O CK-73|K73|cytokeratin-73|keratin 6 irs3|keratin, type II cytoskeletal 73|keratin-73|type II inner root sheath-specific keratin-K6irs3|type-II keratin Kb36 20121230 -9606 319102 ARHGAP16P - ARHGAP15P HGNC:19921 14 14q21.2 Rho GTPase activating protein 16 pseudogene pseudo ARHGAP16P Rho GTPase activating protein 16 pseudogene O - 20121230 -9606 319103 SNORD8 - RNU6C|mgU6-53 HGNC:20159 14 14q11.2 small nucleolar RNA, C/D box 8 snoRNA SNORD8 small nucleolar RNA, C/D box 8 O - 20121230 -9606 319111 DNAJC8P1 - - HGNC:19928 14 14q13.2 DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene 1 pseudo DNAJC8P1 DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene 1 O - 20121230 -9606 319112 EEF1A1P2 - - HGNC:20008 14 14q31.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 2 pseudo EEF1A1P2 eukaryotic translation elongation factor 1 alpha 1 pseudogene 2 O - 20121230 -9606 319114 ENSAP2 - - HGNC:20011 14 14q31.1 endosulfine alpha pseudogene 2 pseudo ENSAP2 endosulfine alpha pseudogene 2 O - 20121230 -9606 319115 EIF2S2P1 - EIF2S2P HGNC:20009 14 14q23.2 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 1 pseudo EIF2S2P1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 1 O - 20121230 -9606 319116 ATP6V1G1P1 - ATP6V1GP1 HGNC:19816 14 14q32.33 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 1 pseudo ATP6V1G1P1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 1 O - 20121230 -9606 319117 EIF3LP1 - EIF3EIPP1|EIF3S6IPP HGNC:20010 14 14q31.1 eukaryotic translation initiation factor 3, subunit L pseudogene 1 pseudo EIF3LP1 eukaryotic translation initiation factor 3, subunit L pseudogene 1 O - 20121230 -9606 319118 EIF4BP1 - EIF4BP HGNC:19929 14 14q21.2 eukaryotic translation initiation factor 4B pseudogene 1 pseudo EIF4BP1 eukaryotic translation initiation factor 4B pseudogene 1 O - 20121230 -9606 319119 ATP5G2P2 - ATP5GP2 HGNC:19672 14 14q21.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 2 pseudo ATP5G2P2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 2 O - 20121230 -9606 319120 YWHAZP1 - YWHAZP HGNC:19938 14 14q21.2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 1 pseudo YWHAZP1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 1 O - 20121230 -9606 319121 YWHAQP1 - YWHAQP HGNC:19937 14 14q21.1 YWHAQ pseudogene 1 pseudo YWHAQP1 YWHAQ pseudogene 1 O - 20121230 -9606 319122 UNGP3 - - HGNC:20036 14 14q31.1 uracil-DNA glycosylase pseudogene 3 pseudo UNGP3 uracil-DNA glycosylase pseudogene 3 O - 20121230 -9606 319123 ZFP64P1 - ZNF405P HGNC:19820 14 14q22.1 ZFP64 zinc finger protein pseudogene 1 pseudo ZFP64P1 ZFP64 zinc finger protein pseudogene 1 O - 20121230 -9606 319127 NARSP1 - NARSP HGNC:19933 14 14q12 asparaginyl-tRNA synthetase pseudogene 1 pseudo NARSP1 asparaginyl-tRNA synthetase pseudogene 1 O - 20121230 -9606 319128 PPIAP6 - PPIAP12|PPIP2 HGNC:20028 14 14q24.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 6 pseudo PPIAP6 peptidylprolyl isomerase A (cyclophilin A) pseudogene 6 O - 20121230 -9606 319129 RPSAP5 - LAMR1P5|RPSA_22_1412 HGNC:20139 14 14q32.32 ribosomal protein SA pseudogene 5 pseudo RPSAP5 ribosomal protein SA pseudogene 5 O - 20121230 -9606 319130 HMGB1P14 - HMGB1L14|HMGB1P HGNC:20014 14 14q23.1 high mobility group box 1 pseudogene 14 pseudo HMGB1P14 high mobility group box 1 pseudogene 14 O - 20121230 -9606 319131 HMGN1P1 - HMGN1L1 HGNC:20015 14 14q22.3 high mobility group nucleosome binding domain 1 pseudogene 1 pseudo HMGN1P1 high mobility group nucleosome binding domain 1 pseudogene 1 O - 20121230 -9606 319132 HMGN2P1 - HMGN2L1|HMGN2P HGNC:19930 14 14q11.2 high mobility group nucleosomal binding domain 2 pseudogene 1 pseudo HMGN2P1 high mobility group nucleosomal binding domain 2 pseudogene 1 O - 20121230 -9606 319133 HNRPCP - - HGNC:20017 14 14q23.1 heterogeneous nuclear ribonucleoprotein C pseudogene pseudo HNRPCP heterogeneous nuclear ribonucleoprotein C pseudogene O - 20121230 -9606 319134 HNRPUP - - HGNC:19931 14 14q21.2 heterogeneous nuclear ribonucleoprotein U pseudogene pseudo HNRPUP heterogeneous nuclear ribonucleoprotein U pseudogene O - 20121230 -9606 319135 RPL10AP1 - RPL10A_6_1413 HGNC:19813 14 14q32.32 ribosomal protein L10a pseudogene 1 pseudo RPL10AP1 ribosomal protein L10a pseudogene 1 O - 20121230 -9606 319136 ATP5G1P1 - ATP5GP3 HGNC:19815 14 14q32.33 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 1 pseudo ATP5G1P1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 1 O - 20121230 -9606 319137 ATP5G1P2 - ATP5GP4 HGNC:19817 14 14q12 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 2 pseudo ATP5G1P2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 2 O - 20121230 -9606 319138 BNIP3P1 - BNIP3P HGNC:19922 14 14q12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 1 pseudo BNIP3P1 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 1 O - 20121230 -9606 319139 SNORD56B - RNU56B HGNC:19771 14 14q24.2 small nucleolar RNA, C/D box 56B snoRNA SNORD56B small nucleolar RNA, C/D box 56B O - 20121230 -9606 319140 GCATP1 - GCATP HGNC:20013 14 14q23.2 glycine C-acetyltransferase pseudogene 1 pseudo GCATP1 glycine C-acetyltransferase pseudogene 1 O - 20121230 -9606 319142 RPL12P5 - RPL12_15_1346 HGNC:19669 14 14q12 ribosomal protein L12 pseudogene 5 pseudo RPL12P5 ribosomal protein L12 pseudogene 5 O - 20121230 -9606 319143 RPL21P10 - RPL21_49_1395 HGNC:19795 14 14q24.3 ribosomal protein L21 pseudogene 10 pseudo RPL21P10 ribosomal protein L21 pseudogene 10 O - 20121230 -9606 319144 RPL21P13 - RPL21_52_1410 HGNC:19812 14 14q32.32 ribosomal protein L21 pseudogene 13 pseudo RPL21P13 ribosomal protein L21 pseudogene 13 O - 20121230 -9606 319145 RPL21P8 - RPL21_48_1381 HGNC:19779 14 14q23.3 ribosomal protein L21 pseudogene 8 pseudo RPL21P8 ribosomal protein L21 pseudogene 8 O - 20121230 -9606 326105 UBE2CP1 - - HGNC:19670 14 14q12 ubiquitin-conjugating enzyme E2C pseudogene 1 pseudo UBE2CP1 ubiquitin-conjugating enzyme E2C pseudogene 1 O - 20121230 -9606 326106 TUBBP3 - - HGNC:18192 14 14q21.2 tubulin, beta pseudogene 3 pseudo TUBBP3 tubulin, beta pseudogene 3 O - 20121230 -9606 326107 STK16P1 - STK16P HGNC:19283 14 14q21.3 serine/threonine kinase 16 pseudogene 1 pseudo STK16P1 serine/threonine kinase 16 pseudogene 1 O - 20121230 -9606 326268 ABI1P1 - ABI1P|SSH3BP1P HGNC:20035 14 14q22.3 abl-interactor 1 pseudogene 1 pseudo ABI1P1 abl-interactor 1 pseudogene 1 O - 20121230 -9606 326269 SRMP2 - - HGNC:20034 14 14q23.1 spermidine synthase pseudogene 2 pseudo SRMP2 spermidine synthase pseudogene 2 O - 20121230 -9606 326272 SNRPGP1 - SNRPGP HGNC:20033 14 14q22.1 small nuclear ribonucleoprotein polypeptide G pseudogene 1 pseudo SNRPGP1 small nuclear ribonucleoprotein polypeptide G pseudogene 1 O - 20121230 -9606 326275 RPL12P7 - RPL12_16_1383 HGNC:19782 14 14q24.1 ribosomal protein L12 pseudogene 7 pseudo RPL12P7 ribosomal protein L12 pseudogene 7 O - 20121230 -9606 326276 SF3B4P1 - SF3B4P HGNC:19821 14 14q23.3 splicing factor 3b, subunit 4 pseudogene 1 pseudo SF3B4P1 splicing factor 3b, subunit 4 pseudogene 1 O - 20121230 -9606 326277 SETP2 - - HGNC:20032 14 14q22.1 SET pseudogene 2 pseudo SETP2 SET pseudogene 2 O - 20121230 -9606 326278 RPL13AP2 - RPL13A_12_1359 HGNC:19675 14 14q21.3 ribosomal protein L13a pseudogene 2 pseudo RPL13AP2 ribosomal protein L13a pseudogene 2 O - 20121230 -9606 326279 RPL15P2 - RPL15_6_1404 HGNC:19803 14 14q32.13 ribosomal protein L15 pseudogene 2 pseudo RPL15P2 ribosomal protein L15 pseudogene 2 O - 20121230 -9606 326286 RPL17P3 - - HGNC:19796 14 14q31.1 ribosomal protein L17 pseudogene 3 pseudo RPL17P3 ribosomal protein L17 pseudogene 3 O - 20121230 -9606 326288 RPL17P4 - RPL17_23_1411 HGNC:19811 14 14q32.32 ribosomal protein L17 pseudogene 4 pseudo RPL17P4 ribosomal protein L17 pseudogene 4 O - 20121230 -9606 326289 RPL18AP1 - RPL18A_3_1401 HGNC:19778 14 14q32.12 ribosomal protein L18a pseudogene 1 pseudo RPL18AP1 ribosomal protein L18a pseudogene 1 O - 20121230 -9606 326291 RPL18P1 - RPL18_7_1361 HGNC:19673 14 14q21.3 ribosomal protein L18 pseudogene 1 pseudo RPL18P1 ribosomal protein L18 pseudogene 1 O - 20121230 -9606 326292 RPL22P2 - RPL22_9_1393 HGNC:19794 14 14q24.3 ribosomal protein L22 pseudogene 2 pseudo RPL22P2 ribosomal protein L22 pseudogene 2 O - 20121230 -9606 326293 RPL23AP10 - RPL23A_28_1405 HGNC:19804 14 14q32.2 ribosomal protein L23a pseudogene 10 pseudo RPL23AP10 ribosomal protein L23a pseudogene 10 O - 20121230 -9606 326294 RPL23AP11 - RPL23A_29_1408 HGNC:19808 14 14q32.31 ribosomal protein L23a pseudogene 11 pseudo RPL23AP11 ribosomal protein L23a pseudogene 11 O - 20121230 -9606 326295 EIF4EBP1P1 - EIF4EBP1P HGNC:20160 14 14q11.2 eukaryotic translation initiation factor 4E binding protein 1 pseudogene 1 pseudo EIF4EBP1P1 eukaryotic translation initiation factor 4E binding protein 1 pseudogene 1 O - 20121230 -9606 326296 HSBP1P1 - - HGNC:20053 14 14q23.1 heat shock factor binding protein 1 pseudogene 1 pseudo HSBP1P1 heat shock factor binding protein 1 pseudogene 1 O - 20121230 -9606 326297 RPL26P2 - RPL26_14_1341 HGNC:19773 14 14q11.2 ribosomal protein L26 pseudogene 2 pseudo RPL26P2 ribosomal protein L26 pseudogene 2 O - 20121230 -9606 326298 RPL26P3 - RPL26_17_1344 HGNC:19776 14 14q12 ribosomal protein L26 pseudogene 3 pseudo RPL26P3 ribosomal protein L26 pseudogene 3 O - 20121230 -9606 326299 RPL27P1 - RPL27_7_1347 HGNC:19668 14 14q12 ribosomal protein L27 pseudogene 1 pseudo RPL27P1 ribosomal protein L27 pseudogene 1 O - 20121230 -9606 326300 HSPE1P2 - HSPEP2 HGNC:20052 14 14q23.2 heat shock 10kDa protein 1 (chaperonin 10) pseudogene 2 pseudo HSPE1P2 heat shock 10kDa protein 1 (chaperonin 10) pseudogene 2 O - 20121230 -9606 326301 RPL36AP2 - RPL36A_18_1380 HGNC:19777 14 14q23.3 ribosomal protein L36a pseudogene 2 pseudo RPL36AP2 ribosomal protein L36a pseudogene 2 O - 20121230 -9606 326302 NEK2P1 - NEK2P HGNC:19272 14 14q11.2 NEK2 pseudogene 1 pseudo NEK2P1 NEK2 pseudogene 1 O - 20121230 -9606 326303 RPL36P3 - RPL36AP3|RPL36_6_1387 HGNC:19786 14 14q24.2 ribosomal protein L36 pseudogene 3 pseudo RPL36P3 ribosomal protein L36 pseudogene 3 O - 20121230 -9606 326304 RPL36AP4 - RPL36A_19_1402 HGNC:19802 14 14q32.12 ribosomal protein L36a pseudogene 4 pseudo RPL36AP4 ribosomal protein L36a pseudogene 4 O - 20121230 -9606 326305 MOCS3P1 - MOCS3P HGNC:20021 14 14q23.1 molybdenum cofactor synthesis 3 pseudogene 1 pseudo MOCS3P1 molybdenum cofactor synthesis 3 pseudogene 1 O - 20121230 -9606 326306 RPL39P2 - RPL39_16_1342 HGNC:19774 14 14q11.2 ribosomal protein L39 pseudogene 2 pseudo RPL39P2 ribosomal protein L39 pseudogene 2 O - 20121230 -9606 326307 RPL3P4 - - HGNC:19805 14 14q32.2 ribosomal protein L3 pseudogene 4 pseudo RPL3P4 ribosomal protein L3 pseudogene 4 O - 20121230 -9606 326308 RPL41P4 - - HGNC:19788 14 14q24.3 ribosomal protein L41 pseudogene 4 pseudo RPL41P4 ribosomal protein L41 pseudogene 4 O - 20121230 -9606 326309 RPL7AP5 - RPL7A_26_1382 HGNC:19781 14 14q24.1 ribosomal protein L7a pseudogene 5 pseudo RPL7AP5 ribosomal protein L7a pseudogene 5 O - 20121230 -9606 326310 RPL7AP6 - RPL7A_27_1386 HGNC:19785 14 14q24.2 ribosomal protein L7a pseudogene 6 pseudo RPL7AP6 ribosomal protein L7a pseudogene 6 O - 20121230 -9606 326311 RPL9P6 - RPL9_10_1398 HGNC:19798 14 14q31.1 ribosomal protein L9 pseudogene 6 pseudo RPL9P6 ribosomal protein L9 pseudogene 6 O - 20121230 -9606 326312 RPS12P1 - RPS12_13_1388 HGNC:19787 14 14q24.2 ribosomal protein S12 pseudogene 1 pseudo RPS12P1 ribosomal protein S12 pseudogene 1 O - 20121230 -9606 326315 PTTG4P - - HGNC:20055 14 14q24.2 pituitary tumor-transforming 4 pseudogene pseudo PTTG4P pituitary tumor-transforming 4 pseudogene O - 20121230 -9606 326316 RPS15AP2 - RPS15A_11_1364 HGNC:19671 14 14q21.3 ribosomal protein S15a pseudogene 2 pseudo RPS15AP2 ribosomal protein S15a pseudogene 2 O - 20121230 -9606 326317 RPS15AP3 - RPS15A_19_1360 HGNC:19674 14 14q21.3 ribosomal protein S15a pseudogene 3 pseudo RPS15AP3 ribosomal protein S15a pseudogene 3 O - 20121230 -9606 326320 RPS18P2 - RPS18_7_1400 HGNC:19801 14 14q32.11 ribosomal protein S18 pseudogene 2 pseudo RPS18P2 ribosomal protein S18 pseudogene 2 O - 20121230 -9606 326321 RPS24P2 - RPS24_8_1390 HGNC:19791 14 14q24.3 ribosomal protein S24 pseudogene 2 pseudo RPS24P2 ribosomal protein S24 pseudogene 2 O - 20121230 -9606 326322 RPS24P3 - RPS24_9_1397 HGNC:19797 14 14q31.1 ribosomal protein S24 pseudogene 3 pseudo RPS24P3 ribosomal protein S24 pseudogene 3 O - 20121230 -9606 326323 RPS27AP4 - RPS27A_7_1343 HGNC:19775 14 14q12 ribosomal protein S27a pseudogene 4 pseudo RPS27AP4 ribosomal protein S27a pseudogene 4 O - 20121230 -9606 326325 RPS2P2 - RPS2_17_1389 HGNC:19790 14 14q24.3 ribosomal protein S2 pseudogene 2 pseudo RPS2P2 ribosomal protein S2 pseudogene 2 O - 20121230 -9606 326326 RPS2P3 - RPS2_19_1406 HGNC:19806 14 14q32.2 ribosomal protein S2 pseudogene 3 pseudo RPS2P3 ribosomal protein S2 pseudogene 3 O - 20121230 -9606 326332 FLJ31813 - - - 10 10q11.22 FAM21B pseudogene pseudo - - - - 20120726 -9606 326336 SSXP1 - psiSSX1 HGNC:30637 X Xp11.2 SSX family pseudogene 1 pseudo SSXP1 SSX family pseudogene 1 O - 20121230 -9606 326337 SSXP4 - psiSSX4 HGNC:30641 X Xp11.2 SSX family pseudogene 4 pseudo SSXP4 SSX family pseudogene 4 O - 20121230 -9606 326339 SSXP5 - psiSSX5 HGNC:30642 X Xp11.2 SSX family pseudogene 5 pseudo SSXP5 SSX family pseudogene 5 O - 20121230 -9606 326340 ZAR1 - - HGNC:20436|MIM:607520|Ensembl:ENSG00000182223|HPRD:09599|Vega:OTTHUMG00000102093 4 4p11 zygote arrest 1 protein-coding ZAR1 zygote arrest 1 O oocyte-specific maternal effect factor|zygote arrest protein 1 20121230 -9606 326341 SSXP3 - psiSSX3 HGNC:30640 X Xp11.2 SSX family pseudogene 3 pseudo SSXP3 SSX family pseudogene 3 O - 20121230 -9606 326342 EMR4P hCG_1811451 EMR4|FIRE|GPR127|PGR16 HGNC:19240|MIM:612305 19 19p13.3 egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene pseudo EMR4P egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene O - 20121230 -9606 326343 MT1DP - MTM HGNC:7396|HPRD:17610 16 16q13 metallothionein 1D, pseudogene pseudo MT1DP metallothionein 1D, pseudogene O - 20121230 -9606 326585 SSXP8 - psiSSX8 HGNC:30199 X Xp11.2 SSX family pseudogene 8 pseudo SSXP8 SSX family pseudogene 8 O - 20121230 -9606 326586 SSXP9 - psiSSX9 HGNC:30645 X Xp11.2 SSX family pseudogene 9 pseudo SSXP9 SSX family pseudogene 9 O - 20121230 -9606 326587 SSXP6 - psiSSX6 HGNC:30643 X Xp11.2 SSX family pseudogene 6 pseudo SSXP6 SSX family pseudogene 6 O - 20121230 -9606 326590 SSXP7 - psiSSX7 HGNC:30644 X Xp11.2 SSX family pseudogene 7 pseudo SSXP7 SSX family pseudogene 7 O - 20121230 -9606 326591 MORF4L1P1 - MORF4LP1|MRG1 HGNC:20400 1 1q41 mortality factor 4 like 1 pseudogene 1 pseudo MORF4L1P1 mortality factor 4 like 1 pseudogene 1 O - 20121230 -9606 326593 MORF4L1P3 - MORF4LP3|MRG11 HGNC:20402 11 11p15 mortality factor 4 like 1 pseudogene 3 pseudo MORF4L1P3 mortality factor 4 like 1 pseudogene 3 O - 20121230 -9606 326594 MORF4L1P2 - MORF4LP2|MORF4LP4|MRG5 HGNC:20401 12 12p13.2 mortality factor 4 like 1 pseudogene 2 pseudo MORF4L1P2 mortality factor 4 like 1 pseudogene 2 O - 20121230 -9606 326596 MAD2L1P1 - MAD2L1P HGNC:20019 14 14q23.1 MAD2 mitotic arrest deficient-like 1 (yeast) pseudogene 1 pseudo MAD2L1P1 MAD2 mitotic arrest deficient-like 1 (yeast) pseudogene 1 O - 20121230 -9606 326603 MTCO1P2 - - HGNC:19932 14 14q12 MT-CO1 pseudogene 2 pseudo MTCO1P2 MT-CO1 pseudogene 2 O - 20121209 -9606 326605 NCOA4P1 - NCOA4P HGNC:20022 14 14q23.3 nuclear receptor coactivator 4 pseudogene 1 pseudo NCOA4P1 nuclear receptor coactivator 4 pseudogene 1 O - 20121230 -9606 326606 NDUFB8P1 - - HGNC:20023 14 14q24.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 1 pseudo NDUFB8P1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 1 O - 20121230 -9606 326607 NMNATP - - HGNC:20024 14 14q31.1 nicotinamide nucleotide adenylyltransferase pseudogene pseudo NMNATP nicotinamide nucleotide adenylyltransferase pseudogene O - 20121230 -9606 326608 NPM1P20 - - HGNC:20140 14 14q32.31 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 20 pseudo NPM1P20 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 20 O - 20121230 -9606 326609 NT5CP1 - - HGNC:20046 14 14q24.3 5',3'-nucleotidase, cytosolic pseudogene 1 pseudo NT5CP1 5',3'-nucleotidase, cytosolic pseudogene 1 O - 20121230 -9606 326611 NT5CP2 - - HGNC:20047 14 14q24.3 5',3'-nucleotidase, cytosolic pseudogene 2 pseudo NT5CP2 5',3'-nucleotidase, cytosolic pseudogene 2 O - 20121230 -9606 326613 NUTF2P2 - - HGNC:19934 14 14q13.2 nuclear transport factor 2 pseudogene 2 pseudo NUTF2P2 nuclear transport factor 2 pseudogene 2 O - 20121230 -9606 326614 PEBP1P1 - PBPP1 HGNC:20054 14 14q32.2 phosphatidylethanolamine binding protein 1 pseudogene 1 pseudo PEBP1P1 phosphatidylethanolamine binding protein 1 pseudogene 1 O - 20121230 -9606 326615 MED15P1 - MED15P|PCQAPP HGNC:19271 14 14q11.2 mediator complex subunit 15 pseudogene 1 pseudo MED15P1 mediator complex subunit 15 pseudogene 1 O - 20121230 -9606 326616 PDLIM1P - - HGNC:20026 14 14q21.3 PDZ and LIM domain 1 pseudogene pseudo PDLIM1P PDZ and LIM domain 1 pseudogene O - 20121230 -9606 326617 PSMA3P - - HGNC:20029 14 14q23.1 proteasome (prosome, macropain) subunit, alpha type, 3 pseudogene pseudo PSMA3P proteasome (prosome, macropain) subunit, alpha type, 3 pseudogene O - 20121230 -9606 326624 RAB37 - - HGNC:30268|MIM:609956|Ensembl:ENSG00000172794|HPRD:06702|Vega:OTTHUMG00000134282 17 17q25.1 RAB37, member RAS oncogene family protein-coding RAB37 RAB37, member RAS oncogene family O RAB37, member of RAS oncogene family|ras-related protein Rab-37 20121230 -9606 326625 MMAB - ATR|cblB|cob HGNC:19331|MIM:607568|Ensembl:ENSG00000139428|HPRD:07398|Vega:OTTHUMG00000169255 12 12q24 methylmalonic aciduria (cobalamin deficiency) cblB type protein-coding MMAB methylmalonic aciduria (cobalamin deficiency) cblB type O ATP:cob(I)alamin adenosyltransferase|ATP:corrinoid adenosyltransferase|aquocob(I)alamin vitamin B12s adenosyltransferase|cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial|methylmalonic aciduria type B protein 20121230 -9606 326626 PTMAP7 - - HGNC:20031 14 14q32 prothymosin, alpha pseudogene 7 pseudo PTMAP7 prothymosin, alpha pseudogene 7 O - 20121230 -9606 326627 RANBP20P - - HGNC:19734 14 14q11.2 RAN binding protein 20 pseudogene pseudo RANBP20P RAN binding protein 20 pseudogene O - 20121230 -9606 326628 RPA2P - - HGNC:19676 14 14q21.3 replication protein A2 pseudogene pseudo RPA2P replication protein A2 pseudogene O - 20121230 -9606 327657 SERPINA9 UNQ692/PRO1337 GCET1|SERPINA11|SERPINA11b HGNC:15995|Ensembl:ENSG00000170054|HPRD:11546|Vega:OTTHUMG00000167710 14 14q32.13 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 protein-coding SERPINA9 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 O centerin|germinal center B cell-expressed transcript 1|germinal center B-cell-expressed transcript 1 protein|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9|serine proteinase inhibitor A11|serpin A9 20121230 -9606 327658 HDHD1P1 - FAM16AY|HDHD1BP HGNC:20200 Y Yq11.221 haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 1 pseudo HDHD1P1 haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 1 O - 20121230 -9606 327659 HDHD1P2 - FAM16B|HDHD1CP HGNC:20195 1 1q21.3 haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 2 pseudo HDHD1P2 haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 2 O - 20121230 -9606 333926 PPM1J RP11-426L16.5 PP2CZ|PP2Czeta|PPP2CZ HGNC:20785|MIM:609957|Ensembl:ENSG00000155367|HPRD:15171|Vega:OTTHUMG00000012019 1 1p13.2 protein phosphatase, Mg2+/Mn2+ dependent, 1J protein-coding PPM1J protein phosphatase, Mg2+/Mn2+ dependent, 1J O PP2C-zeta|protein phosphatase 1J|protein phosphatase 1J (PP2C domain containing)|protein phosphatase 2C isoform zeta|protein phosphatase 2C zeta|protein phosphatase 2a, catalytic subunit, zeta isoform 20121230 -9606 333929 SNAI3 - SMUC|SNAIL3|ZNF293|Zfp293 HGNC:18411|MIM:612741|Ensembl:ENSG00000185669|HPRD:18781|Vega:OTTHUMG00000173243 16 16q24.3 snail homolog 3 (Drosophila) protein-coding SNAI3 snail homolog 3 (Drosophila) O protein snail homolog 3|zinc finger protein 293|zinc finger protein SNAI3 20121230 -9606 333932 HIST2H3A - H3/n|H3/o HGNC:20505|Ensembl:ENSG00000203852|HPRD:13626|Vega:OTTHUMG00000012094 1 1q21.2 histone cluster 2, H3a protein-coding HIST2H3A histone cluster 2, H3a O histone 2, H3a|histone H3.2|histone H3/o 20121230 -9606 337867 UBAC2 RP11-178C10.1 PHGDHL1 HGNC:20486|Ensembl:ENSG00000134882|Vega:OTTHUMG00000017267 13 13q32.3 UBA domain containing 2 protein-coding UBAC2 UBA domain containing 2 O RP11-178C10.1|UBA domain-containing protein 2|phosphoglycerate dehydrogenase like 1|phosphoglycerate dehydrogenase-like protein 1|ubiquitin-associated domain-containing protein 2 20121230 -9606 337872 HIST3H2BA - - HGNC:20515 1 1q42.13 histone cluster 3, H2ba, pseudogene pseudo HIST3H2BA histone cluster 3, H2ba, pseudogene O - 20121230 -9606 337873 HIST2H2BC - H2B/t|HIST2H2BD HGNC:20516 1 1q21.2 histone cluster 2, H2bc (pseudogene) pseudo HIST2H2BC histone cluster 2, H2bc (pseudogene) O - 20121230 -9606 337874 HIST2H2BD - H2B/o|H2B/s|H2BFO HGNC:20517 1 1q21.2 histone cluster 2, H2bd (pseudogene) pseudo HIST2H2BD histone cluster 2, H2bd (pseudogene) O - 20121230 -9606 337875 HIST2H2BA - - HGNC:20560 1 1p12-p11.2 histone cluster 2, H2ba (pseudogene) pseudo HIST2H2BA histone cluster 2, H2ba (pseudogene) O - 20121230 -9606 337876 CHSY3 - CHSY2|CSS3 HGNC:24293|MIM:609963|Ensembl:ENSG00000198108|HPRD:16766|Vega:OTTHUMG00000163043 5 5q23.3 chondroitin sulfate synthase 3 protein-coding CHSY3 chondroitin sulfate synthase 3 O N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase 3|N-acetylgalactosaminyltransferase 3|carbohydrate synthase 2|chSy-2|chondroitin glucuronyltransferase 3|chondroitin synthase 2|chondroitin synthase-2|glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase II 20121230 -9606 337878 KRTAP7-1 - KAP7.1 HGNC:18934 21 21q22.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding KRTAP7-1 keratin associated protein 7-1 (gene/pseudogene) O high tyrosine-glycine keratin-associated protein 7.1|keratin-associated protein 7-1 20121230 -9606 337879 KRTAP8-1 - KAP8.1 HGNC:18935|Ensembl:ENSG00000183640|HPRD:11221|Vega:OTTHUMG00000057771 21 21q22.1 keratin associated protein 8-1 protein-coding KRTAP8-1 keratin associated protein 8-1 O high glycine-tyrosine keratin-associated protein 8.1|keratin-associated protein 8-1 20121230 -9606 337880 KRTAP11-1 - HACL-1|HACL1|KAP11.1 HGNC:18922|MIM:600064|Ensembl:ENSG00000182591|HPRD:11196|Vega:OTTHUMG00000057773 21 21q22.1 keratin associated protein 11-1 protein-coding KRTAP11-1 keratin associated protein 11-1 O high sulfur keratin-associated protein 11.1|keratin-associated protein 11-1 20121230 -9606 337882 KRTAP19-1 - KAP19.1 HGNC:18936|Ensembl:ENSG00000184351|HPRD:11205|Vega:OTTHUMG00000057768 21 21q22.1 keratin associated protein 19-1 protein-coding KRTAP19-1 keratin associated protein 19-1 O high tyrosine-glycine keratin-associated protein 19.1|keratin-associated protein 19-1 20121230 -9606 337892 MGR3 - - MIM:607498 6 6p21.1-p12.2 Migraine, familial, with or without aura, susceptibility to unknown - - - - 20120622 -9606 337893 BULN - - MIM:607499 10 10p Bulimia nervosa, susceptibility to unknown - - - - 20120622 -9606 337895 BMIQ3 - - HGNC:23829|MIM:607446 6 6q23-q25 body mass index QTL 3 unknown BMIQ3 body mass index QTL 3 O - 20120622 -9606 337940 STRM - STRN2 HGNC:13462 14 14q24.1 striamin protein-coding STRM striamin O striatin 2 20080828 -9606 337959 KRTAP13-2 - KAP13-2 HGNC:18923|Ensembl:ENSG00000182816|HPRD:11201|Vega:OTTHUMG00000057793 21 21q22.1 keratin associated protein 13-2 protein-coding KRTAP13-2 keratin associated protein 13-2 O keratin-associated protein 13-2 20121230 -9606 337960 KRTAP13-3 - KAP13.3 HGNC:18925|Ensembl:ENSG00000240432|HPRD:11202|Vega:OTTHUMG00000057776 21 21q22.1 keratin associated protein 13-3 protein-coding KRTAP13-3 keratin associated protein 13-3 O keratin-associated protein 13-3 20121230 -9606 337963 KRTAP23-1 - KAP23.1 HGNC:18928|Ensembl:ENSG00000186980|HPRD:11217|Vega:OTTHUMG00000057792 21 21q22.1 keratin associated protein 23-1 protein-coding KRTAP23-1 keratin associated protein 23-1 O keratin-associated protein 23-1 20121230 -9606 337964 KRTAP13-5P - KAP13A|KRTAP13P1 HGNC:18929 21 21q22.1 keratin associated protein 13-5, pseudogene pseudo KRTAP13-5P keratin associated protein 13-5, pseudogene O - 20121230 -9606 337965 KRTAP13-6P - KAP13B|KRTAP13P2 HGNC:18930 21 21q22.1 keratin associated protein 13-6, pseudogene pseudo KRTAP13-6P keratin associated protein 13-6, pseudogene O - 20121230 -9606 337966 KRTAP6-1 - C21orf103|KAP6.1 HGNC:18931|Ensembl:ENSG00000184724|HPRD:11218|Vega:OTTHUMG00000057788 21 21q22.1 keratin associated protein 6-1 protein-coding KRTAP6-1 keratin associated protein 6-1 O keratin-associated protein 6-1 20121230 -9606 337967 KRTAP6-2 - KAP6.2 HGNC:18932|Ensembl:ENSG00000186930|HPRD:11219|Vega:OTTHUMG00000057794 21 21q22.1 keratin associated protein 6-2 protein-coding KRTAP6-2 keratin associated protein 6-2 O keratin-associated protein 6-2 20121230 -9606 337968 KRTAP6-3 - KAP6.3 HGNC:18933|Ensembl:ENSG00000212938|HPRD:11220|Vega:OTTHUMG00000057791 21 21q22.1 keratin associated protein 6-3 protein-coding KRTAP6-3 keratin associated protein 6-3 O keratin-associated protein 6-3 20121230 -9606 337969 KRTAP19-2 - KAP19.2 HGNC:18937|Ensembl:ENSG00000186965|HPRD:11206|Vega:OTTHUMG00000057772 21 21q22.1 keratin associated protein 19-2 protein-coding KRTAP19-2 keratin associated protein 19-2 O keratin-associated protein 19-2 20121230 -9606 337970 KRTAP19-3 - GTRHP|KAP19.3 HGNC:18938|Ensembl:ENSG00000244025|HPRD:11207|Vega:OTTHUMG00000057782 21 21q22.1 keratin associated protein 19-3 protein-coding KRTAP19-3 keratin associated protein 19-3 O GTHRP|glycine/tyrosine-rich protein|keratin-associated protein 19-3 20121230 -9606 337971 KRTAP19-4 - KAP19.4 HGNC:18939|Ensembl:ENSG00000186967|HPRD:11208|Vega:OTTHUMG00000057767 21 21q22.1 keratin associated protein 19-4 protein-coding KRTAP19-4 keratin associated protein 19-4 O keratin-associated protein 19-4 20121230 -9606 337972 KRTAP19-5 - KAP19.5 HGNC:18940|Ensembl:ENSG00000186977|HPRD:11209|Vega:OTTHUMG00000057774 21 21q22.1 keratin associated protein 19-5 protein-coding KRTAP19-5 keratin associated protein 19-5 O keratin-associated protein 19-5 20121230 -9606 337973 KRTAP19-6 - KAP19.6 HGNC:18941|Ensembl:ENSG00000186925|HPRD:11210|Vega:OTTHUMG00000057779 21 21q22.1 keratin associated protein 19-6 protein-coding KRTAP19-6 keratin associated protein 19-6 O KRTAP19-6-V1|KRTAP19-6-V2|keratin-associated protein 19-6 20121230 -9606 337974 KRTAP19-7 - KAP19.7 HGNC:18942|Ensembl:ENSG00000244362|HPRD:11211|Vega:OTTHUMG00000057785 21 21q22.1 keratin associated protein 19-7 protein-coding KRTAP19-7 keratin associated protein 19-7 O keratin-associated protein 19-7 20121230 -9606 337975 KRTAP20-1 - KAP20.1 HGNC:18943|Ensembl:ENSG00000244624|HPRD:11212|Vega:OTTHUMG00000057801 21 21q22.1 keratin associated protein 20-1 protein-coding KRTAP20-1 keratin associated protein 20-1 O keratin-associated protein 20-1 20121230 -9606 337976 KRTAP20-2 - KAP20.2 HGNC:18944|Ensembl:ENSG00000184032|HPRD:11213|Vega:OTTHUMG00000057786 21 21q22.1 keratin associated protein 20-2 protein-coding KRTAP20-2 keratin associated protein 20-2 O keratin-associated protein 20-2 20121230 -9606 337977 KRTAP21-1 - KAP21.1 HGNC:18945|Ensembl:ENSG00000187005|HPRD:11214|Vega:OTTHUMG00000057777 21 21q22.1 keratin associated protein 21-1 protein-coding KRTAP21-1 keratin associated protein 21-1 O keratin-associated protein 21-1 20121230 -9606 337978 KRTAP21-2 - KAP21.2 HGNC:18946|Ensembl:ENSG00000187026|HPRD:11215|Vega:OTTHUMG00000057769 21 21q22.1 keratin associated protein 21-2 protein-coding KRTAP21-2 keratin associated protein 21-2 O keratin-associated protein 21-2 20121230 -9606 337979 KRTAP22-1 - KAP22.1 HGNC:18947|Ensembl:ENSG00000186924|HPRD:11216|Vega:OTTHUMG00000057778 21 21q22.1 keratin associated protein 22-1 protein-coding KRTAP22-1 keratin associated protein 22-1 O keratin-associated protein 22-1 20121230 -9606 337980 KRTAP8-2P - KAP8A|KRTAP8P1 HGNC:18948 21 21q22.1 keratin associated protein 8-2, pseudogene pseudo KRTAP8-2P keratin associated protein 8-2, pseudogene O - 20121230 -9606 337981 KRTAP8-3P - KAP8B|KRTAP8P2 HGNC:18949 21 21q22.1 keratin associated protein 8-3, pseudogene pseudo KRTAP8-3P keratin associated protein 8-3, pseudogene O - 20121230 -9606 337982 KRTAP19-9P - KAP19A|KRTAP19P1 HGNC:18950 21 21q22.1 keratin associated protein 19-9, pseudogene pseudo KRTAP19-9P keratin associated protein 19-9, pseudogene O - 20121230 -9606 337983 KRTAP19-10P - KAP19B|KRTAP19P2 HGNC:18951 21 21q22.1 keratin associated protein 19-10, pseudogene pseudo KRTAP19-10P keratin associated protein 19-10, pseudogene O - 20121230 -9606 337984 KRTAP19-11P - KAP19C|KRTAP19P3 HGNC:18952 21 21q22.1 keratin associated protein 19-11, pseudogene pseudo KRTAP19-11P keratin associated protein 19-11, pseudogene O - 20121230 -9606 337985 KRTAP20-3 - KAP19D|KAP20.3|KRTAP19P4 HGNC:34001|Ensembl:ENSG00000206104|Vega:OTTHUMG00000057798 21 21q22.11 keratin associated protein 20-3 protein-coding KRTAP20-3 keratin associated protein 20-3 O keratin associated protein 19 pseudogene 4|keratin-associated protein 20-3 20121230 -9606 337986 KRTAP21-4P - KAP21A|KRTAP21P1 HGNC:18954 21 21q22.1 keratin associated protein 21-4, pseudogene pseudo KRTAP21-4P keratin associated protein 21-4, pseudogene O - 20121230 -9606 337991 DFNB38 - - HGNC:19210|MIM:608219 6 6q25.3-q27 deafness, autosomal recessive 38 unknown DFNB38 deafness, autosomal recessive 38 O - 20120622 -9606 338002 LINC00524 - C14orf71 HGNC:20118 14 14q32.31 long intergenic non-protein coding RNA 524 miscRNA LINC00524 long intergenic non-protein coding RNA 524 O - 20121021 -9606 338004 LINC00226 - C14orf97|NCRNA00226 HGNC:20168 14 14q32.33 long intergenic non-protein coding RNA 226 miscRNA LINC00226 long intergenic non-protein coding RNA 226 O - 20121230 -9606 338005 LINC00221 hCG_2042090 C14orf98|NCRNA00221 HGNC:20169 14 - long intergenic non-protein coding RNA 221 miscRNA LINC00221 long intergenic non-protein coding RNA 221 O chromosome 14 open reading frame 98 20121230 -9606 338017 KRT8P1 - - HGNC:20281 14 14q21.1 keratin 8 pseudogene 1 pseudo KRT8P1 keratin 8 pseudogene 1 O - 20121230 -9606 338026 BMIQ4 - - HGNC:23830|MIM:607447 11 11q24 body mass index QTL 4 unknown BMIQ4 body mass index QTL 4 O - 20120622 -9606 338027 BMND2 - - MIM:605833 1 1q21-q23 Bone mineral density variation 2 unknown - - - - 20120622 -9606 338030 GLM1 - - MIM:607248 15 15q23-q26.3 Glioma, familial, 1 unknown - - - - 20120622 -9606 338069 ST7-OT4 - NCRNA00042|ST7OT4 HGNC:18835 7 7q31.2 ST7 overlapping transcript 4 (non-protein coding) miscRNA ST7-OT4 ST7 overlapping transcript 4 (non-protein coding) O - 20121230 -9606 338090 SPG24 - - HGNC:22993|MIM:607584 13 13q14 spastic paraplegia 24 (autosomal recessive) unknown SPG24 spastic paraplegia 24 (autosomal recessive) O - 20120622 -9606 338091 PSMD10P3 - - HGNC:30152 13 13q21 proteasome 26S subunit, non-ATPase, 10 pseudogene 3 pseudo PSMD10P3 proteasome 26S subunit, non-ATPase, 10 pseudogene 3 O - 20121230 -9606 338094 FAM151A UNQ3034/PRO9836 C1orf179 HGNC:25032|Ensembl:ENSG00000162391|HPRD:11326|Vega:OTTHUMG00000009888 1 - family with sequence similarity 151, member A protein-coding FAM151A family with sequence similarity 151, member A O hyporthetical protein MGC27169|protein FAM151A 20121230 -9606 338095 PSME2P3 - - HGNC:30156 4 4q32 proteasome activator subunit 2 pseudogene 3 pseudo PSME2P3 proteasome activator subunit 2 pseudogene 3 O - 20121230 -9606 338096 PSME2P4 - - HGNC:30157 4 4p14 proteasome activator subunit 2 pseudogene 4 pseudo PSME2P4 proteasome activator subunit 2 pseudogene 4 O - 20121230 -9606 338097 PSME2P5 - - HGNC:30158 8 8p21 proteasome activator subunit 2 pseudogene 5 pseudo PSME2P5 proteasome activator subunit 2 pseudogene 5 O - 20121230 -9606 338098 PSME2P6 - - HGNC:30159 10 10p12 proteasome activator subunit 2 pseudogene 6 pseudo PSME2P6 proteasome activator subunit 2 pseudogene 6 O - 20121230 -9606 338099 PSME2P2 - - HGNC:30160 13 13q13 proteasome activator subunit 2 pseudogene 2 pseudo PSME2P2 proteasome activator subunit 2 pseudogene 2 O - 20121230 -9606 338321 NLRP9 - CLR19.1|NALP9|NOD6|PAN12 HGNC:22941|MIM:609663|Ensembl:ENSG00000185792|HPRD:14808|Vega:OTTHUMG00000180920 19 19q13.42 NLR family, pyrin domain containing 9 protein-coding NLRP9 NLR family, pyrin domain containing 9 O NACHT, LRR and PYD containing protein 9|NACHT, LRR and PYD domains-containing protein 9|NACHT, leucine rich repeat and PYD containing 9|PYRIN and NACHT-containing protein 12|nucleotide-binding oligomerization domain protein 6|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 9 20121230 -9606 338322 NLRP10 - CLR11.1|NALP10|NOD8|PAN5|PYNOD HGNC:21464|MIM:609662|Ensembl:ENSG00000182261|HPRD:14802|Vega:OTTHUMG00000165673 11 11p15.4 NLR family, pyrin domain containing 10 protein-coding NLRP10 NLR family, pyrin domain containing 10 O NACHT, LRR and PYD domains-containing protein 10|NACHT, leucine rich repeat and PYD containing 10|nucleotide-binding oligomerization domain protein 8|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 10 20121230 -9606 338323 NLRP14 - CLR11.2|GC-LRR|NALP14|NOD5|PAN8 HGNC:22939|MIM:609665|Ensembl:ENSG00000158077|HPRD:11383|Vega:OTTHUMG00000165508 11 11p15.4 NLR family, pyrin domain containing 14 protein-coding NLRP14 NLR family, pyrin domain containing 14 O NACHT, LRR and PYD containing protein 14|NACHT, LRR and PYD domains-containing protein 14|NACHT, leucine rich repeat and PYD containing 14|nucleotide-binding oligomerization domain protein 5|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 14 20121230 -9606 338324 S100A7A - NICE-2|S100A15|S100A7L1|S100A7f HGNC:21657|Ensembl:ENSG00000184330|HPRD:15290|Vega:OTTHUMG00000013122 1 1q21.3 S100 calcium binding protein A7A protein-coding S100A7A S100 calcium binding protein A7A O S100 calcium binding protein A15|S100 calcium binding protein A7-like 1|S100 calcium-binding protein A15|S100 calcium-binding protein A7-like 1|S100 calcium-binding protein A7A|protein S100-A7A 20121230 -9606 338328 GPIHBP1 - GPI-HBP1 HGNC:24945|MIM:612757|Ensembl:ENSG00000182851|HPRD:17347|Vega:OTTHUMG00000164950 8 8q24.3 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 O GPI anchored high density lipoprotein binding protein 1|GPI-anchored HDL-binding protein 1|glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1|high density lipoprotein-binding protein 1 20121230 -9606 338331 AZON - - MIM:606766 6 6p21.3 Azoospremia, nonobstructive unknown - - - - 20120622 -9606 338332 CELIAC5 - GSES MIM:607202 15 15q11-q13 Celiac disease, susceptibility to, 5 unknown - - - - 20120622 -9606 338333 PAPA3 - - MIM:607324 19 19p13.2-p13.1 Polydactyly, postaxial, type A3 unknown - - - - 20120622 -9606 338334 CHDS1 - - MIM:607339 16 16pter-p13 Coronary heart disease, susceptibility to, 1 unknown - - - - 20120622 -9606 338339 CLEC4D - CLEC-6|CLEC6|CLECSF8|MCL|MPCL HGNC:14554|MIM:609964|Ensembl:ENSG00000166527|HPRD:13074|Vega:OTTHUMG00000168674 12 12p13.31 C-type lectin domain family 4, member D protein-coding CLEC4D C-type lectin domain family 4, member D O C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 8|C-type lectin domain family 4 member D|C-type lectin receptor|C-type lectin superfamily member 8|C-type lectin-like receptor 6|macrophage C-type lectin 20121230 -9606 338340 MMS - - MIM:156240 9 9p Malignant mesothelioma, susceptibility to unknown - - - - 20120622 -9606 338342 MGR4 - MGOA MIM:607501 14 14q21.2-q22.3 Migraine, susceptibility to, 4 unknown - - - - 20120622 -9606 338376 IFNE UNQ360/PRO655 IFN-E|IFNE1|IFNT1|PRO655 HGNC:18163|Ensembl:ENSG00000184995|HPRD:17132|Vega:OTTHUMG00000019672 9 9p21.3 interferon, epsilon protein-coding IFNE interferon, epsilon O IFN-epsilon|interferon epsilon|interferon epsilon 1|interferon epsilon-1|interferon tau-1|interferon-epsilon 20121230 -9606 338377 CRAC1 - C15DUPq|CRCS4|DUP15q|HMPS|HMPS1|MPSH HGNC:20574|MIM:601228 15 15q13-q21 colorectal adenoma and carcinoma 1 unknown CRAC1 colorectal adenoma and carcinoma 1 O - 20120922 -9606 338382 RAB7B - RAB7 HGNC:30513|HPRD:15202 1 1q32 RAB7B, member RAS oncogene family protein-coding RAB7B RAB7B, member RAS oncogene family O Ras-related protein Rab-7|ras-related protein Rab-7b 20121230 -9606 338386 HSR - - MIM:139900 2 2p12-q22 Hand skill, relative unknown - - - - 20120622 -9606 338388 MRPS16P3 - - HGNC:29733 22 22q12.3 mitochondrial ribosomal protein S16 pseudogene 3 pseudo MRPS16P3 mitochondrial ribosomal protein S16 pseudogene 3 O - 20121230 -9606 338389 MRPS24P1 - - HGNC:29759 11 11p15.4 mitochondrial ribosomal protein S24 pseudogene 1 pseudo MRPS24P1 mitochondrial ribosomal protein S24 pseudogene 1 O - 20121230 -9606 338390 MRPS25P1 - - HGNC:29760 4 4q21.23 mitochondrial ribosomal protein S25 pseudogene 1 pseudo MRPS25P1 mitochondrial ribosomal protein S25 pseudogene 1 O - 20121230 -9606 338391 HIST2H2BB - - HGNC:20654 1 1q21 histone cluster 2, H2bb (pseudogene) pseudo HIST2H2BB histone cluster 2, H2bb (pseudogene) O - 20121230 -9606 338396 TAS2R2P - PS9|T2R02|T2R2|TAS2R2 HGNC:20615 7 7p21.3 taste receptor, type 2, member 2 pseudogene pseudo TAS2R2P taste receptor, type 2, member 2 pseudogene O - 20121230 -9606 338398 TAS2R60 - T2R56|T2R60 HGNC:20639|MIM:613968|Ensembl:ENSG00000185899|HPRD:18159|Vega:OTTHUMG00000154891 7 7q35 taste receptor, type 2, member 60 protein-coding TAS2R60 taste receptor, type 2, member 60 O taste receptor type 2 member 56|taste receptor type 2 member 60 20121230 -9606 338399 TAS2R62P - PS1|T2R62|TAS2R62 HGNC:20640 7 7q35 taste receptor, type 2, member 62, pseudogene pseudo TAS2R62P taste receptor, type 2, member 62, pseudogene O - 20121230 -9606 338411 TELAB1 - - HGNC:20680|MIM:187260 5 5q14 telangiectasia, benign 1 unknown TELAB1 telangiectasia, benign 1 O - 20110215 -9606 338412 TAS2R64P - PS2|T2R64|T2R64P HGNC:20642 12 12p13.2 taste receptor, type 2, member 64 pseudogene pseudo TAS2R64P taste receptor, type 2, member 64 pseudogene O - 20121230 -9606 338413 TAS2R63P - PS6|T2R63 HGNC:20641 12 12p13.2 taste receptor, type 2, member 63 pseudogene pseudo TAS2R63P taste receptor, type 2, member 63 pseudogene O - 20121230 -9606 338414 TAS2R18 - PS4|T2R18|T2R65|TAS2R65|TAS2R65P HGNC:19107 12 12p13.2 taste receptor, type 2, member 18 pseudogene pseudo TAS2R18 taste receptor, type 2, member 18 pseudogene O - 20121230 -9606 338427 SNORD108 - HBII-437 HGNC:32772 15 15q11.2 small nucleolar RNA, C/D box 108 snoRNA SNORD108 small nucleolar RNA, C/D box 108 O - 20121230 -9606 338428 SNORD109A - HBII-438A HGNC:32773 15 15q11.2 small nucleolar RNA, C/D box 109A snoRNA SNORD109A small nucleolar RNA, C/D box 109A O - 20121230 -9606 338429 SNORD109B - HBII-438B HGNC:32774 15 15q11.2 small nucleolar RNA, C/D box 109B snoRNA SNORD109B small nucleolar RNA, C/D box 109B O - 20121230 -9606 338433 SNORD115-1 - HBII-52-1|RNHBII52 HGNC:33020|MIM:609837 15 15q11.2 small nucleolar RNA, C/D box 115-1 snoRNA SNORD115-1 small nucleolar RNA, C/D box 115-1 O - 20121230 -9606 338434 CANDN1 - CANDF3|FCNC HGNC:20683|MIM:607644 11 11p12-q12.1 candidiasis, nail 1 (with ICAM1 deficiency) unknown CANDN1 candidiasis, nail 1 (with ICAM1 deficiency) O - 20120622 -9606 338435 SCA25 - - HGNC:20684|MIM:608703 2 2p21-p15 spinocerebellar ataxia 25 unknown SCA25 spinocerebellar ataxia 25 O - 20120622 -9606 338436 BLACE - - HGNC:20484|MIM:608450 7 7q36 B-cell acute lymphoblastic leukemia expressed unknown BLACE B-cell acute lymphoblastic leukemia expressed O - 20121021 -9606 338440 ANO9 - PIG5|TMEM16J|TP53I5 HGNC:20679|Ensembl:ENSG00000185101|HPRD:18214|Vega:OTTHUMG00000165446 11 11p15.5 anoctamin 9 protein-coding ANO9 anoctamin 9 O anoctamin-9|p53-induced gene 5 protein|transmembrane protein 16J|tumor protein p53 inducible protein 5|tumor protein p53-inducible protein 5 20121230 -9606 338442 HCAR2 - GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g HGNC:24827|MIM:609163|Ensembl:ENSG00000182782|HPRD:16453|Vega:OTTHUMG00000162722 12 12q24.31 hydroxycarboxylic acid receptor 2 protein-coding HCAR2 hydroxycarboxylic acid receptor 2 O G protein-coupled receptor 109A|G protein-coupled receptor HM74a|G-protein coupled receptor 109A|G-protein coupled receptor HM74A|hydroxy-carboxylic acid receptor 2|niacin receptor 1|nicotinic acid receptor 20121230 -9606 338448 GTF2IP2 - - HGNC:16082 21 21q11.2 general transcription factor IIi, pseudogene 2 pseudo GTF2IP2 general transcription factor IIi, pseudogene 2 O - 20121230 -9606 338470 MESTP1 - - HGNC:29660 6 6q22-q23 mesoderm specific transcript pseudogene 1 pseudo MESTP1 mesoderm specific transcript pseudogene 1 O - 20121230 -9606 338557 FFAR4 - BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 HGNC:19061|MIM:609044|Ensembl:ENSG00000186188|HPRD:16422|Vega:OTTHUMG00000034409 10 10q23.33 free fatty acid receptor 4 protein-coding FFAR4 free fatty acid receptor 4 O G-protein coupled receptor 120|G-protein coupled receptor 129|G-protein coupled receptor GT01|G-protein coupled receptor PGR4|omega-3 fatty acid receptor 1 20121230 -9606 338567 KCNK18 - K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK HGNC:19439|MIM:613655|Ensembl:ENSG00000186795|HPRD:17173|Vega:OTTHUMG00000019120 10 10q25.3 potassium channel, subfamily K, member 18 protein-coding KCNK18 potassium channel, subfamily K, member 18 O TWIK-related individual K+ channel|TWIK-related individual potassium channel|TWIK-related spinal cord K+ channel|TWIK-related spinal cord potassium channel|potassium channel subfamily K member 18 20121230 -9606 338579 LOC338579 - - - 10 10q11.21 ankyrin repeat domain-containing protein 30B pseudogene pseudo - - - - 20121230 -9606 338588 LINC00705 - - HGNC:27874 10 10p15.1 long intergenic non-protein coding RNA 705 miscRNA LINC00705 long intergenic non-protein coding RNA 705 O - 20121230 -9606 338591 CHCHD3P1 - - HGNC:44697 10 10p14 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 1 pseudo CHCHD3P1 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 1 O - 20121230 -9606 338596 ST8SIA6 - SIA8F|SIAT8F|ST8SIA-VI HGNC:23317|MIM:610139|Ensembl:ENSG00000148488|HPRD:15344|Vega:OTTHUMG00000017748 10 10p12.33 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 O SIAT8-F|ST8SiaVI|alpha-2,8-sialyltransferase 8F|alpha-2,8-sialyltransferase 8F variant 2|alpha-2,8-sialyltransferase 8F variant 3|sialyltransferase 8F (alpha-2, 8-sialyltransferase)|sialytransferase St8Sia VI 20121230 -9606 338598 LOC338598 - - - 10 10q11.22 family with sequence similarity 35, member A pseudogene pseudo - - - - 20121230 -9606 338599 DUPD1 - DUSP27|FMDSP HGNC:23481|Ensembl:ENSG00000188716|HPRD:16846|Vega:OTTHUMG00000018512 10 10q22.2 dual specificity phosphatase and pro isomerase domain containing 1 protein-coding DUPD1 dual specificity phosphatase and pro isomerase domain containing 1 O atypical dual-specific protein phosphatase|dual specificity phosphatase 27|dual specificity phosphatase DUPD1 20121230 -9606 338611 RPS26P40 - RPS26_20_1061 HGNC:36906 10 10q22.1 ribosomal protein S26 pseudogene 40 pseudo RPS26P40 ribosomal protein S26 pseudogene 40 O - 20121230 -9606 338620 LOC338620 - - - 10 10p11.23 uncharacterized LOC338620 protein-coding - - - - 20120508 -9606 338637 OR52M2P - OR52M4 HGNC:15226 11 11p15.4 olfactory receptor, family 52, subfamily M, member 2 pseudogene pseudo OR52M2P olfactory receptor, family 52, subfamily M, member 2 pseudogene O - 20121230 -9606 338645 LUZP2 UNQ2566/PRO6246 KFSP2566|PRO6246 HGNC:23206|MIM:608178|Ensembl:ENSG00000187398|HPRD:17348|Vega:OTTHUMG00000166109 11 11p14.3 leucine zipper protein 2 protein-coding LUZP2 leucine zipper protein 2 O - 20121230 -9606 338651 LOC338651 - - - 11 11p15.5 uncharacterized LOC338651 miscRNA - - - - 20121230 -9606 338653 KCNQ1-AS1 - - HGNC:42790 11 11p15.5 KCNQ1 antisense RNA 1 miscRNA KCNQ1-AS1 KCNQ1 antisense RNA 1 O - 20121021 -9606 338657 CCDC84 DLNB14 - HGNC:30460|Ensembl:ENSG00000186166|HPRD:13234|Vega:OTTHUMG00000166348 11 11q23.3 coiled-coil domain containing 84 protein-coding CCDC84 coiled-coil domain containing 84 O coiled-coil domain-containing protein 84 20121230 -9606 338661 TMEM225 - PMP22CD HGNC:32390|Ensembl:ENSG00000204300|HPRD:18492|Vega:OTTHUMG00000165959 11 11q24.1 transmembrane protein 225 protein-coding TMEM225 transmembrane protein 225 O PMP22 claudin domain containing|PMP22 claudin domain-containing protein 20121230 -9606 338662 OR8D4 - OR11-275 HGNC:14840|Ensembl:ENSG00000181518|HPRD:17788|Vega:OTTHUMG00000165960 11 11q24.1 olfactory receptor, family 8, subfamily D, member 4 protein-coding OR8D4 olfactory receptor, family 8, subfamily D, member 4 O olfactory receptor 8D4|olfactory receptor OR11-275 20121230 -9606 338667 LOC338667 - - - 11 11q24.2 uncharacterized LOC338667 protein-coding - - - uncharacterized protein LOC338667 20121230 -9606 338674 OR5F1 - OR11-10 HGNC:8343|MIM:608492|Ensembl:ENSG00000149133|HPRD:12246|Vega:OTTHUMG00000166825 11 11q12.1 olfactory receptor, family 5, subfamily F, member 1 protein-coding OR5F1 olfactory receptor, family 5, subfamily F, member 1 O olfactory receptor 11-10|olfactory receptor 5F1|olfactory receptor OR11-167 20121230 -9606 338675 OR5AP2 - OR9J1 HGNC:15258|Ensembl:ENSG00000172464|HPRD:17749|Vega:OTTHUMG00000166865 11 11q12.1 olfactory receptor, family 5, subfamily AP, member 2 protein-coding OR5AP2 olfactory receptor, family 5, subfamily AP, member 2 O olfactory receptor 5AP2|olfactory receptor, family 9, subfamily J, member 1 20121230 -9606 338692 ANKRD13D - - HGNC:27880|Ensembl:ENSG00000172932|HPRD:17349|Vega:OTTHUMG00000162929 11 11q13.2 ankyrin repeat domain 13 family, member D protein-coding ANKRD13D ankyrin repeat domain 13 family, member D O ankyrin repeat domain-containing protein 13D 20121230 -9606 338694 LOC338694 - - - 11 11q13.2 uncharacterized LOC338694 miscRNA - - - - 20120508 -9606 338699 ANKRD42 - SARP HGNC:26752|Ensembl:ENSG00000137494|HPRD:08230|Vega:OTTHUMG00000167075 11 11q14.1 ankyrin repeat domain 42 protein-coding ANKRD42 ankyrin repeat domain 42 O ankyrin repeat domain-containing protein 42|several ankyrin repeat protein 20121230 -9606 338707 B4GALNT4 - - HGNC:26315|Ensembl:ENSG00000182272|HPRD:08046|Vega:OTTHUMG00000119075 11 11p15.5 beta-1,4-N-acetyl-galactosaminyl transferase 4 protein-coding B4GALNT4 beta-1,4-N-acetyl-galactosaminyl transferase 4 O N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1|NGalNAc-T1|beta-1,4-N-acetylgalactosaminyltransferase IV|beta1,4-N-acetylgalactosaminyltransferases IV|beta4GalNAc-T4|beta4GalNAcT4|betaGT4 20121230 -9606 338739 LOC338739 - - - 11 11p13 uncharacterized LOC338739 miscRNA - - - - 20121230 -9606 338751 OR52L1 - OR11-50 HGNC:14785|Ensembl:ENSG00000183313|HPRD:17744|Vega:OTTHUMG00000165374 11 11p15.4 olfactory receptor, family 52, subfamily L, member 1 protein-coding OR52L1 olfactory receptor, family 52, subfamily L, member 1 O olfactory receptor 52L1|olfactory receptor OR11-50 20121230 -9606 338755 OR2AG2 - OR11-76|OR2AG2P HGNC:15143|Ensembl:ENSG00000188124|HPRD:14936|Vega:OTTHUMG00000165868 11 11p15.4 olfactory receptor, family 2, subfamily AG, member 2 protein-coding OR2AG2 olfactory receptor, family 2, subfamily AG, member 2 O olfactory receptor 2AG2|olfactory receptor OR11-76 pseudogene|olfactory receptor, family 2, subfamily AG, member 2 pseudogene 20121230 -9606 338758 LOC338758 - - - 12 12q21.33 uncharacterized LOC338758 miscRNA - - - - 20121230 -9606 338761 C1QL4 - C1QTNF11|CTRP11 HGNC:31416|Ensembl:ENSG00000186897|HPRD:17350|Vega:OTTHUMG00000169515 12 12q13.12 complement component 1, q subcomponent-like 4 protein-coding C1QL4 complement component 1, q subcomponent-like 4 O complement C1q-like protein 4 20121230 -9606 338773 TMEM119 PSEC0199 - HGNC:27884|Ensembl:ENSG00000183160|HPRD:11260|Vega:OTTHUMG00000169410 12 12q23.3 transmembrane protein 119 protein-coding TMEM119 transmembrane protein 119 O - 20121230 -9606 338785 KRT79 - K6L|KRT6L HGNC:28930|MIM:611160|Ensembl:ENSG00000185640|HPRD:11183|Vega:OTTHUMG00000169878 12 12q13.13 keratin 79 protein-coding KRT79 keratin 79 O CK-79|K79|cytokeratin-79|keratin 6L|keratin, type II cytoskeletal 79|keratin-6L|keratin-79|type-II keratin Kb38 20121230 -9606 338797 LOC338797 - - HPRD:18782 12 12q24.33 uncharacterized LOC338797 miscRNA - - - - 20121230 -9606 338799 LOC338799 - - - 12 12q24.31 uncharacterized LOC338799 miscRNA - - - - 20121230 -9606 338805 ST13P8 - - HGNC:38743 12 12q14.1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 8 pseudo ST13P8 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 8 O - 20121230 -9606 338809 C12orf74 - - HGNC:27887|Ensembl:ENSG00000214215|Vega:OTTHUMG00000170105 12 12q22 chromosome 12 open reading frame 74 protein-coding C12orf74 chromosome 12 open reading frame 74 O uncharacterized protein C12orf74 20121230 -9606 338811 FAM19A2 - TAFA-2|TAFA2 HGNC:21589|Ensembl:ENSG00000198673|HPRD:16876|Vega:OTTHUMG00000170207 12 12q14.1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 protein-coding FAM19A2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 O chemokine-like protein TAFA-2|protein FAM19A2 20121230 -9606 338817 LOC338817 - - - 12 12p13.2 uncharacterized LOC338817 miscRNA - - - - 20121230 -9606 338821 SLCO1B7 - LST-3|LST-3TM12|LST3|SLC21A21 HGNC:32934|Ensembl:ENSG00000205754|Ensembl:ENSG00000257046|HPRD:17455|Vega:OTTHUMG00000169018|Vega:OTTHUMG00000169045 12 12p12.2 solute carrier organic anion transporter family, member 1B7 (non-functional) protein-coding SLCO1B7 solute carrier organic anion transporter family, member 1B7 (non-functional) O liver-specific organic anion transporter 3|liver-specific organic anion transporter 3TM12|organic anion transporter LST-3b|putative solute carrier organic anion transporter family member 1B7 20121230 -9606 338862 LINC00550 - - HGNC:43688 13 13q21.33 long intergenic non-protein coding RNA 550 miscRNA LINC00550 long intergenic non-protein coding RNA 550 O - 20121230 -9606 338864 LINC00347 - - HGNC:27890 13 13q21.33 long intergenic non-protein coding RNA 347 miscRNA LINC00347 long intergenic non-protein coding RNA 347 O - 20121230 -9606 338870 RPS12P23 - RPS12_11_1301 HGNC:35573 13 13q12.11 ribosomal protein S12 pseudogene 23 pseudo RPS12P23 ribosomal protein S12 pseudogene 23 O - 20121230 -9606 338872 C1QTNF9 RP11-307N16.1 AQL1|C1QTNF9A|CTRP9 HGNC:28732|MIM:614285|Ensembl:ENSG00000240654|HPRD:14659|Vega:OTTHUMG00000016576 13 13q12.12 C1q and tumor necrosis factor related protein 9 protein-coding C1QTNF9 C1q and tumor necrosis factor related protein 9 O complement C1q and tumor necrosis factor-related protein 9|complement C1q and tumor necrosis factor-related protein 9A|complement C1q tumor necrosis factor-related protein 9|complement C1q tumor necrosis factor-related protein 9A 20121230 -9606 338879 RNASE10 - RNASE9 HGNC:19275|Ensembl:ENSG00000182545|HPRD:18495|Vega:OTTHUMG00000170986 14 14q11.2 ribonuclease, RNase A family, 10 (non-active) protein-coding RNASE10 ribonuclease, RNase A family, 10 (non-active) O ribonuclease 10|ribonuclease-like protein 10 20121230 -9606 338917 VSX2 - CHX10|HOX10|MCOP2|MCOPCB3|RET1 HGNC:1975|MIM:142993|Ensembl:ENSG00000119614|HPRD:08852|Vega:OTTHUMG00000171206 14 14q24.3 visual system homeobox 2 protein-coding VSX2 visual system homeobox 2 O ceh-10 homeo domain containing homolog|ceh-10 homeodomain-containing homolog|homeobox protein CHX10 20121230 -9606 338949 TMEM202 - - HGNC:33733|Ensembl:ENSG00000187806|Vega:OTTHUMG00000172716 15 15q24.1 transmembrane protein 202 protein-coding TMEM202 transmembrane protein 202 O - 20121230 -9606 338963 LOC338963 - - - 15 15q25.2 epididymal protein pseudogene pseudo - - - - 20121230 -9606 339005 WHAMMP3 - WHAMML1|WHDC1L1 HGNC:27892 15 15q11.2 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3 pseudo WHAMMP3 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3 O - 20121230 -9606 339010 POTEB - A26B1|CT104.5|POTE-15|POTE15 HGNC:33734|MIM:608912|HPRD:17882 15 15q11.2 POTE ankyrin domain family, member B protein-coding POTEB POTE ankyrin domain family, member B O ANKRD26-like family B member 1|ANKRD26-like family B, member 1|POTE ankyrin domain family member B|cancer/testis antigen family 104, member 5|prostate, ovary, testis-expressed protein on chromosome 15|protein expressed in prostate, ovary, testis, and placenta 15 20121209 -9606 339039 PKD1P3 - HG3 HGNC:30067 16 16p13.11 polycystic kidney disease 1 (autosomal dominant) pseudogene 3 pseudo PKD1P3 polycystic kidney disease 1 (autosomal dominant) pseudogene 3 O - 20121230 -9606 339044 PKD1P1 - HG1 HGNC:30065 16 16p13.11 polycystic kidney disease 1 (autosomal dominant) pseudogene 1 pseudo PKD1P1 polycystic kidney disease 1 (autosomal dominant) pseudogene 1 O - 20121230 -9606 339059 FLJ40448 - - HPRD:08282 16 16q24.3 uncharacterized protein FLJ40448 unknown - - - - 20121230 -9606 339105 PRSS53 - POL3S|UNQ308 HGNC:34407|MIM:610561|Ensembl:ENSG00000151006|Vega:OTTHUMG00000047358 16 16p11.2 protease, serine, 53 protein-coding PRSS53 protease, serine, 53 O EDTP308|polyserase 3|polyserase-3|polyserine protease 3|serine protease 53 20121230 -9606 339122 RAB43 - RAB11B|RAB41 HGNC:19983|Ensembl:ENSG00000172780|HPRD:17947|Vega:OTTHUMG00000137364 3 3q21.3 RAB43, member RAS oncogene family protein-coding RAB43 RAB43, member RAS oncogene family O ras-related protein Rab-41|ras-related protein Rab-43 20121230 -9606 339123 JMJD8 PP14397 C16orf20 HGNC:14148|Ensembl:ENSG00000161999|HPRD:17351|Vega:OTTHUMG00000172950 16 16p13.3 jumonji domain containing 8 protein-coding JMJD8 jumonji domain containing 8 O jmjC domain-containing protein 8|jumonji domain-containing protein 8 20121230 -9606 339145 FAM92B - - HGNC:24781|Ensembl:ENSG00000153789|HPRD:13488 16 16q24.1 family with sequence similarity 92, member B protein-coding FAM92B family with sequence similarity 92, member B O protein FAM92B 20121230 -9606 339166 LOC339166 - - - 17 17p13.3-p13.2 uncharacterized LOC339166 miscRNA - - - - 20121230 -9606 339168 TMEM95 UNQ9390/PRO34281 UNQ9390 HGNC:27898|Ensembl:ENSG00000182896|HPRD:14165|Vega:OTTHUMG00000132899 17 17p13.1 transmembrane protein 95 protein-coding TMEM95 transmembrane protein 95 O - 20121230 -9606 339175 METTL2A HSPC266 METTL2 HGNC:25755|Ensembl:ENSG00000087995|HPRD:07795|Vega:OTTHUMG00000164527 17 17q23.2 methyltransferase like 2A protein-coding METTL2A methyltransferase like 2A O methyltransferase-like protein 2A 20121230 -9606 339184 CCDC144NL - - HGNC:33735|Ensembl:ENSG00000205212|HPRD:17572|Vega:OTTHUMG00000132271 17 17p11.2 coiled-coil domain containing 144 family, N-terminal like protein-coding CCDC144NL coiled-coil domain containing 144 family, N-terminal like O putative coiled-coil domain-containing protein 144 N-terminal-like 20121230 -9606 339186 LOC339186 - - - 17 17p11.2 keratin 17 pseudogene pseudo - - - - 20121230 -9606 339192 LOC339192 - - - 17 17q21.31 uncharacterized LOC339192 miscRNA - - - - 20121230 -9606 339201 ASB16-AS1 - C17orf65 HGNC:25442|HPRD:13231 17 17q21.31 ASB16 antisense RNA 1 miscRNA ASB16-AS1 ASB16 antisense RNA 1 O - 20121230 -9606 339210 C17orf67 - - HGNC:27900|Ensembl:ENSG00000214226|Vega:OTTHUMG00000132083 17 17q22 chromosome 17 open reading frame 67 protein-coding C17orf67 chromosome 17 open reading frame 67 O uncharacterized protein C17orf67 20121230 -9606 339221 ENPP7 UNQ3077/PRO9912 ALK-SMase HGNC:23764|Ensembl:ENSG00000182156|Vega:OTTHUMG00000177462 17 17q25.3 ectonucleotide pyrophosphatase/phosphodiesterase 7 protein-coding ENPP7 ectonucleotide pyrophosphatase/phosphodiesterase 7 O E-NPP 7|NPP-7|alkaline sphingomyelin phosphodiesterase|alkaline sphingomyelinase|ectonucleotide pyrophosphatase/phosphodiesterase family member 7|intestinal alkaline sphingomyelinase 20121230 -9606 339229 OXLD1 - C17orf90 HGNC:27901|Ensembl:ENSG00000204237|Vega:OTTHUMG00000178063 17 17q25.3 oxidoreductase-like domain containing 1 protein-coding OXLD1 oxidoreductase-like domain containing 1 O oxidoreductase-like domain-containing protein 1 20121230 -9606 339230 CCDC137 - - HGNC:33451|MIM:614271|Ensembl:ENSG00000185298|Vega:OTTHUMG00000178064 17 17q25.3 coiled-coil domain containing 137 protein-coding CCDC137 coiled-coil domain containing 137 O coiled-coil domain-containing protein 137|hepatocellular carcinoma related protein 2 20121230 -9606 339231 ARL16 - - HGNC:27902|Ensembl:ENSG00000214087|Vega:OTTHUMG00000178103 17 17q25.3 ADP-ribosylation factor-like 16 protein-coding ARL16 ADP-ribosylation factor-like 16 O ADP-ribosylation factor-like protein 16 20121230 -9606 339240 LOC339240 - - - 17 17p11.2 keratin 17 pseudogene pseudo - - - - 20121230 -9606 339241 KRT17P2 - - HGNC:6429 17 17p11.2 keratin 17 pseudogene 2 pseudo KRT17P2 keratin 17 pseudogene 2 O - 20121230 -9606 339244 KRT16P4 - - HGNC:37809 17 17p11.2 keratin 16 pseudogene 4 pseudo KRT16P4 keratin 16 pseudogene 4 O - 20121230 -9606 339256 NOS2P3 - - HGNC:35124 17 17p11.2 nitric oxide synthase 2 pseudogene 3 pseudo NOS2P3 nitric oxide synthase 2 pseudogene 3 O - 20121230 -9606 339257 LOC339257 - - - 17 17p11.2 karyopherin (importin) beta 2 pseudogene pseudo - - - - 20121230 -9606 339258 LOC339258 - - - 17 17p11.2 keratin 17 pseudogene pseudo - - - - 20121230 -9606 339260 LOC339260 - - - 17 17p11.2 uncharacterized LOC339260 miscRNA - - - - 20121230 -9606 339263 C17orf51 - - HGNC:27904|Ensembl:ENSG00000212719|Vega:OTTHUMG00000132832 17 17p11.2 chromosome 17 open reading frame 51 protein-coding C17orf51 chromosome 17 open reading frame 51 O uncharacterized protein C17orf51 20121230 -9606 339287 MSL1 - MSL-1|hMSL1 HGNC:27905|MIM:614801|Ensembl:ENSG00000188895|Vega:OTTHUMG00000179629 17 17q21.1 male-specific lethal 1 homolog (Drosophila) protein-coding MSL1 male-specific lethal 1 homolog (Drosophila) O MSL1-like 1|male-specific lethal 1 homolog|male-specific lethal 1-like 1|male-specific lethal-1 homolog 1 20121230 -9606 339290 LINC00667 - - HGNC:27906 18 18p11.31 long intergenic non-protein coding RNA 667 miscRNA LINC00667 long intergenic non-protein coding RNA 667 O - 20121230 -9606 339291 LRRC30 - - HGNC:30219|Ensembl:ENSG00000206422|Vega:OTTHUMG00000178479 18 18p11.23 leucine rich repeat containing 30 protein-coding LRRC30 leucine rich repeat containing 30 O leucine-rich repeat-containing protein 30 20121230 -9606 339298 LOC339298 - - - 18 18q23 uncharacterized LOC339298 miscRNA - - - - 20121230 -9606 339302 CPLX4 - CPX-IV|CPXIV HGNC:24330|MIM:609586|Ensembl:ENSG00000166569|HPRD:13091|Vega:OTTHUMG00000132756 18 18q21.32 complexin 4 protein-coding CPLX4 complexin 4 O CPX IV|complexin IV|complexin-4 20121230 -9606 339316 LOC339316 - - - 19 19q12 uncharacterized LOC339316 protein-coding - - - - 20120508 -9606 339318 ZNF181 - HHZ181 HGNC:12971|MIM:606741|Ensembl:ENSG00000197841|HPRD:18783|Vega:OTTHUMG00000157508 19 19q13.11 zinc finger protein 181 protein-coding ZNF181 zinc finger protein 181 O - 20121230 -9606 339324 ZNF260 - OZRF1|PEX1|ZFP260 HGNC:13499|MIM:613749|Ensembl:ENSG00000254004|HPRD:18505|Vega:OTTHUMG00000048155 19 19q13.12 zinc finger protein 260 protein-coding ZNF260 zinc finger protein 260 O zfp-260 20121230 -9606 339327 ZNF546 - ZNF49 HGNC:28671|Ensembl:ENSG00000187187|HPRD:11726 19 19q13.2 zinc finger protein 546 protein-coding ZNF546 zinc finger protein 546 O zinc finger protein 49 20121230 -9606 339344 MYPOP - P42pop HGNC:20178|Ensembl:ENSG00000176182|HPRD:17352 19 19q13.32 Myb-related transcription factor, partner of profilin protein-coding MYPOP Myb-related transcription factor, partner of profilin O myb-related protein p42POP|myb-related transcription factor, partner of profilin|p42 Myb-related transcription factor, partner of profilin|partner of profilin 20121230 -9606 339345 NANOS2 - NOS2 HGNC:23292|MIM:608228|Ensembl:ENSG00000188425|HPRD:18784 19 19q13.32 nanos homolog 2 (Drosophila) protein-coding NANOS2 nanos homolog 2 (Drosophila) O NOS-2|nanos homolog 2 20121230 -9606 339352 LOC339352 - - - 19 19q13.41 cytosolic thiouridylase subunit 1 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 339366 ADAMTSL5 - THSD6 HGNC:27912|Ensembl:ENSG00000185761|HPRD:15504|Vega:OTTHUMG00000180093 19 19p13.3 ADAMTS-like 5 protein-coding ADAMTSL5 ADAMTS-like 5 O ADAMTS-like protein 5|ADAMTSL-5|thrombospondin type-1 domain-containing protein 6|thrombospondin, type I, domain containing 6 20121230 -9606 339390 CLEC4G UNQ431/PRO792 DTTR431|LP2698|LSECtin|UNQ431 HGNC:24591|Ensembl:ENSG00000182566|HPRD:16721 19 19p13.2 C-type lectin domain family 4, member G protein-coding CLEC4G C-type lectin domain family 4, member G O C-type lectin domain family 4 member G|C-type lectin superfamily 4, member G|liver and lymph node sinusoidal endothelial cell C-type lectin 20121230 -9606 339396 NEFHP1 - NEFHL HGNC:7738 1 1p13.1 neurofilament, heavy polypeptide pseudogene 1 pseudo NEFHP1 neurofilament, heavy polypeptide pseudogene 1 O - 20121230 -9606 339398 LINGO4 UNQ9248/PRO34002 DAAT9248|LRRN6D|PRO34002 HGNC:31814|MIM:609794|Ensembl:ENSG00000213171|HPRD:17453|Vega:OTTHUMG00000013059 1 1q21.3 leucine rich repeat and Ig domain containing 4 protein-coding LINGO4 leucine rich repeat and Ig domain containing 4 O leucine rich repeat neuronal 6D|leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4|leucine-rich repeat neuronal protein 6D 20121230 -9606 339400 FLG-AS1 - - HGNC:27913 1 1q21.3 FLG antisense RNA 1 miscRNA FLG-AS1 FLG antisense RNA 1 O - 20121230 -9606 339403 RXFP4 - GPCR142|GPR100|RLN3R2|RXFPR4 HGNC:14666|MIM:609043|Ensembl:ENSG00000173080|HPRD:16421|Vega:OTTHUMG00000017463 1 1q22 relaxin/insulin-like family peptide receptor 4 protein-coding RXFP4 relaxin/insulin-like family peptide receptor 4 O G protein-coupled receptor 100|G-protein coupled receptor 100|G-protein coupled receptor GPCR142|RLN3 receptor 2|insulin-like peptide INSL5 receptor|relaxin 3 receptor 2|relaxin family peptide receptor 4|relaxin-3 receptor 2 20121230 -9606 339416 ANKRD45 - CT117|RP3-436N22.4 HGNC:24786|Ensembl:ENSG00000183831|HPRD:13501|Vega:OTTHUMG00000040546 1 1q25.1 ankyrin repeat domain 45 protein-coding ANKRD45 ankyrin repeat domain 45 O ankyrin repeat domain-containing protein 45|cancer/testis antigen 117 20121230 -9606 339442 LOC339442 - - - 1 1p34.3 uncharacterized LOC339442 miscRNA - - - - 20121230 -9606 339448 C1orf174 - RP13-531C17.2 HGNC:27915|Ensembl:ENSG00000198912|HPRD:17353|Vega:OTTHUMG00000003739 1 1p36.32 chromosome 1 open reading frame 174 protein-coding C1orf174 chromosome 1 open reading frame 174 O UPF0688 protein C1orf174 20121230 -9606 339451 KLHL17 - RP11-54O7.6 HGNC:24023|Ensembl:ENSG00000187961|HPRD:13926|Vega:OTTHUMG00000040721 1 1p36.33 kelch-like 17 (Drosophila) protein-coding KLHL17 kelch-like 17 (Drosophila) O actinfilin|kelch-like protein 17 20121230 -9606 339453 TMEM240 hCG_19301 C1orf70 HGNC:25186|Ensembl:ENSG00000205090|Vega:OTTHUMG00000042193 1 1p36.33 transmembrane protein 240 protein-coding TMEM240 transmembrane protein 240 O transmembrane protein C1orf70 20121230 -9606 339456 TMEM52 RP1-140A9.3 - HGNC:27916|Ensembl:ENSG00000178821|HPRD:14166|Vega:OTTHUMG00000000944 1 1p36.33 transmembrane protein 52 protein-coding TMEM52 transmembrane protein 52 O - 20121230 -9606 339457 C1orf222 - - HGNC:27917|HPRD:14167 1 1p36.33 chromosome 1 open reading frame 222 protein-coding C1orf222 chromosome 1 open reading frame 222 O uncharacterized protein C1orf222 20121230 -9606 339468 LOC339468 - - - 1 1p31.1 uncharacterized LOC339468 unknown - - - - 20120508 -9606 339476 ERVMER61-1 - C1orf99|RP11-393M18.3 HGNC:27919|HPRD:17354 1 1q31.1 endogenous retrovirus group MER61, member 1 unknown ERVMER61-1 endogenous retrovirus group MER61, member 1 O - 20121021 -9606 339479 FAM5C RP11-445K1.1 BRINP3|DBCCR1L|DBCCR1L1 HGNC:22393|Ensembl:ENSG00000162670|HPRD:16782|Vega:OTTHUMG00000035533 1 1q31.1 family with sequence similarity 5, member C protein-coding FAM5C family with sequence similarity 5, member C O DBCCR1-like protein 1|protein FAM5C 20121230 -9606 339483 MTMR9LP - MTMR9L HGNC:27920|HPRD:14168 1 1p35.1 myotubularin related protein 9-like, pseudogene pseudo MTMR9LP myotubularin related protein 9-like, pseudogene O - 20121230 -9606 339487 ZBTB8OS - ARCH|ARCH2 HGNC:24094|Ensembl:ENSG00000176261|HPRD:12470|Vega:OTTHUMG00000007856 1 1p35.1 zinc finger and BTB domain containing 8 opposite strand protein-coding ZBTB8OS zinc finger and BTB domain containing 8 opposite strand O archease (ARCH)|archease-like protein|protein archease|zinc finger and BTB domain-containing opposite strand protein 8 20121230 -9606 339488 TFAP2E - AP2E HGNC:30774|MIM:614428|Ensembl:ENSG00000116819|HPRD:18174|Vega:OTTHUMG00000004388 1 1p34.3 transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) protein-coding TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) O AP2-epsilon|activating enhancer-binding protein 2-epsilon|adaptor-related protein complex 2, epsilon subunit|transcription factor AP-2-epsilon 20121230 -9606 339500 ZNF678 RP4-566D2.2 - HGNC:28652|Ensembl:ENSG00000181450|HPRD:14622|Vega:OTTHUMG00000037700 1 1q42.13 zinc finger protein 678 protein-coding ZNF678 zinc finger protein 678 O hypothetical protein MGC42493 20121230 -9606 339501 PRSS38 - MPN2 HGNC:29625|Ensembl:ENSG00000185888|HPRD:07134|Vega:OTTHUMG00000037701 1 1q42.13 protease, serine, 38 protein-coding PRSS38 protease, serine, 38 O marapsin 2|marapsin-2|serine protease 38|serine protease MPN2 20121230 -9606 339505 LOC339505 - - - 1 1p36.12 uncharacterized LOC339505 miscRNA - - - - 20121230 -9606 339512 C1orf110 RP11-331H2.2 - HGNC:28736|Ensembl:ENSG00000185860|HPRD:14661|Vega:OTTHUMG00000034421 1 1q23.3 chromosome 1 open reading frame 110 protein-coding C1orf110 chromosome 1 open reading frame 110 O coiled-coil domain-containing protein C1orf110 20121230 -9606 339521 FAM58BP - FAM58B HGNC:27373 1 1q32.1 cyclin-related protein FAM58B pseudo FAM58BP family with sequence similarity 58, member B, pseudogene O - 20121230 -9606 339524 LOC339524 - - HPRD:14169 1 1p22.3 uncharacterized LOC339524 miscRNA - - - - 20121230 -9606 339529 LOC339529 - - - 1 1q44 uncharacterized LOC339529 miscRNA - - - - 20121230 -9606 339535 LOC339535 - - - 1 1q43 uncharacterized LOC339535 miscRNA - - - - 20121230 -9606 339539 LOC339539 - - - 1 1p34.2 uncharacterized LOC339539 miscRNA - - - - 20120508 -9606 339541 C1orf228 - NCRNA00082|p40 HGNC:34345|Ensembl:ENSG00000198520|HPRD:17525|Vega:OTTHUMG00000007834 1 1p34.1 chromosome 1 open reading frame 228 protein-coding C1orf228 chromosome 1 open reading frame 228 O uncharacterized protein C1orf228 20121230 -9606 339559 ZFP69 - RP11-656D10.2|ZFP69A|ZNF642 HGNC:24708|Ensembl:ENSG00000187815|HPRD:15883|Vega:OTTHUMG00000007303 1 1p34.2 ZFP69 zinc finger protein protein-coding ZFP69 ZFP69 zinc finger protein O ZFP69 zinc finger protein A|zinc finger protein 642 20121230 -9606 339562 IGKV1OR2-118 - - HGNC:37488|IMGT/GENE-DB:IGKV1OR2-118 2 2p11.1 immunoglobulin kappa variable 1/OR2-118 (pseudogene) pseudo IGKV1OR2-118 immunoglobulin kappa variable 1/OR2-118 (pseudogene) O - 20121230 -9606 339568 LOC339568 - - - 20 20q12 uncharacterized LOC339568 miscRNA - - - - 20121230 -9606 339593 LOC339593 - - Vega:OTTHUMG00000031883 20 20p12.2 uncharacterized LOC339593 miscRNA - - - - 20121230 -9606 339622 LOC339622 - - - 21 21q21.1-q21.2 uncharacterized LOC339622 miscRNA - - - - 20121230 -9606 339665 SLC35E4 - - HGNC:17058|Ensembl:ENSG00000100036|HPRD:15376|Vega:OTTHUMG00000151110 22 22q12.2 solute carrier family 35, member E4 protein-coding SLC35E4 solute carrier family 35, member E4 O solute carrier family 35 member E4 20121230 -9606 339666 LOC339666 - - - 22 22q12.3 uncharacterized LOC339666 miscRNA - - - - 20121230 -9606 339669 TEX33 LL22NC01-81G9.2 C22orf33|EAN57|cE81G9.2 HGNC:28568|Ensembl:ENSG00000185264|HPRD:17529|Vega:OTTHUMG00000150531 22 22q12.3 testis expressed 33 protein-coding TEX33 testis expressed 33 O protein EAN57|testis-expressed sequence 33 protein 20121230 -9606 339674 LINC00634 - BK250D10.8 HGNC:27930 22 22q13.2 long intergenic non-protein coding RNA 634 miscRNA LINC00634 long intergenic non-protein coding RNA 634 O - 20121230 -9606 339685 LOC339685 - - - 22 22q13.31 uncharacterized LOC339685 miscRNA - - - - 20121017 -9606 339736 AK2P2 - - HGNC:33542 2 2p23.1 adenylate kinase 2 pseudogene 2 pseudo AK2P2 adenylate kinase 2 pseudogene 2 O - 20121230 -9606 339742 FAM201B - - HGNC:27933 2 2q21.2 family with sequence similarity 201, member B unknown FAM201B family with sequence similarity 201, member B O - 20121230 -9606 339745 SPOPL - - HGNC:27934|Ensembl:ENSG00000144228|HPRD:11261|Vega:OTTHUMG00000153635 2 2q22.1 speckle-type POZ protein-like protein-coding SPOPL speckle-type POZ protein-like O HIB homolog 2|roadkill homolog 2 20121230 -9606 339751 MLK7-AS1 - - HGNC:27935 2 2q31.1 MLK7 antisense RNA 1 miscRNA MLK7-AS1 MLK7 antisense RNA 1 O - 20121230 -9606 339760 LOC339760 - - - 2 2q14.3 uncharacterized LOC339760 protein-coding - - - - 20121209 -9606 339761 CYP27C1 - - HGNC:33480|Ensembl:ENSG00000186684|HPRD:13360|Vega:OTTHUMG00000153400 2 2q14.3 cytochrome P450, family 27, subfamily C, polypeptide 1 protein-coding CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1 O cytochrome P450 27C1|cytochrome P450, family 27, subfamily C, polypeptide 13 20121230 -9606 339766 MROH2A - HEATR7B1 HGNC:27936|Ensembl:ENSG00000185038|Vega:OTTHUMG00000059037 2 2q37.1 maestro heat-like repeat family member 2A protein-coding MROH2A maestro heat-like repeat family member 2A O HEAT repeat containing 7B1|HEAT repeat-containing protein 7B1 20121230 -9606 339768 ESPNL UNQ3125 - HGNC:27937|Ensembl:ENSG00000144488|HPRD:14170|Vega:OTTHUMG00000133335 2 2q37.3 espin-like protein-coding ESPNL espin-like O espin-like protein 20121230 -9606 339778 C2orf70 - - HGNC:27938|Ensembl:ENSG00000173557|Vega:OTTHUMG00000151994 2 2p23.3 chromosome 2 open reading frame 70 protein-coding C2orf70 chromosome 2 open reading frame 70 O UPF0573 protein C2orf70 20121230 -9606 339779 C2orf53 - - HGNC:28677|Ensembl:ENSG00000186143|HPRD:14633|Vega:OTTHUMG00000128408 2 2p23.3 chromosome 2 open reading frame 53 protein-coding C2orf53 chromosome 2 open reading frame 53 O uncharacterized protein C2orf53 20121230 -9606 339781 KRT18P19 - - HGNC:33387 2 2q32.2 keratin 18 pseudogene 19 pseudo KRT18P19 keratin 18 pseudogene 19 O - 20121230 -9606 339788 LOC339788 - - - 2 2p25.1 uncharacterized LOC339788 miscRNA - - - - 20121230 -9606 339789 LINC00299 - C2orf46|NCRNA00299 HGNC:27940|HPRD:14171 2 2p25.1 long intergenic non-protein coding RNA 299 miscRNA LINC00299 long intergenic non-protein coding RNA 299 O - 20121230 -9606 339799 EIF3FP3 hCG_15200 - HGNC:37625 2 2p16.1 eukaryotic translation initiation factor 3, subunit F pseudogene 3 pseudo EIF3FP3 eukaryotic translation initiation factor 3, subunit F pseudogene 3 O - 20121230 -9606 339803 LOC339803 hCG_1783888 - - 2 2p15 uncharacterized LOC339803 miscRNA - - - - 20121230 -9606 339804 C2orf74 - - HGNC:34439|Ensembl:ENSG00000237651 2 2p15 chromosome 2 open reading frame 74 protein-coding C2orf74 chromosome 2 open reading frame 74 O uncharacterized protein C2orf74 20121230 -9606 339807 LOC339807 - - - 2 2p14 uncharacterized LOC339807 miscRNA - - - - 20121230 -9606 339822 LOC339822 - - - 2 2p25.3 uncharacterized LOC339822 miscRNA - - - - 20121230 -9606 339829 CCDC39 - CILD14|FAP59 HGNC:25244|MIM:613798|Ensembl:ENSG00000145075|Vega:OTTHUMG00000157857 3 3q26.33 coiled-coil domain containing 39 protein-coding CCDC39 coiled-coil domain containing 39 O coiled-coil domain-containing protein 39 20121230 -9606 339834 CCDC36 - CT74 HGNC:27945|Ensembl:ENSG00000173421|HPRD:14172|Vega:OTTHUMG00000155920 3 3p21.31 coiled-coil domain containing 36 protein-coding CCDC36 coiled-coil domain containing 36 O cancer/testis antigen 74|coiled-coil domain-containing protein 36 20121230 -9606 339843 LOC339843 - - - 3 3q12.1 WW domain containing E3 ubiquitin protein ligase 1 pseudogene pseudo - - - - 20121230 -9606 339845 ASS1P7 - ASSP7 HGNC:770 3 3q26.32 argininosuccinate synthetase 1 pseudogene 7 pseudo ASS1P7 argininosuccinate synthetase 1 pseudogene 7 O - 20121230 -9606 339855 KY - - HGNC:26576|MIM:605739|Ensembl:ENSG00000174611|HPRD:13953|Vega:OTTHUMG00000159788 3 3q22.2 kyphoscoliosis peptidase protein-coding KY kyphoscoliosis peptidase O - 20121230 -9606 339862 LOC339862 hCG_1807427 - - 3 3p24.3 uncharacterized LOC339862 protein-coding - - - uncharacterized protein LOC339862 20121230 -9606 339874 LOC339874 - - - 3 3q22.1 uncharacterized LOC339874 miscRNA - - - - 20121230 -9606 339879 ALG1L6P - - HGNC:44375 3 3p12.3 asparagine-linked glycosylation 1-like 6, pseudogene pseudo ALG1L6P asparagine-linked glycosylation 1-like 6, pseudogene O - 20121230 -9606 339881 EIF4BP8 - - HGNC:37941 3 3q21.1 eukaryotic translation initiation factor 4B pseudogene 8 pseudo EIF4BP8 eukaryotic translation initiation factor 4B pseudogene 8 O - 20121230 -9606 339883 C3orf35 - APRG1 HGNC:24082|MIM:611429|Ensembl:ENSG00000198590|HPRD:16502|Vega:OTTHUMG00000155923 3 3p22.2 chromosome 3 open reading frame 35 protein-coding C3orf35 chromosome 3 open reading frame 35 O AP20 region protein 1|AP20 region protein1 20121230 -9606 339894 LOC339894 - - - 3 3q25.31 uncharacterized LOC339894 miscRNA - - - - 20121230 -9606 339896 GADL1 - - HGNC:27949|Ensembl:ENSG00000144644|HPRD:13557|Vega:OTTHUMG00000130621 3 3p24.1-p23 glutamate decarboxylase-like 1 protein-coding GADL1 glutamate decarboxylase-like 1 O glutamate decarboxylase-like protein 1 20121230 -9606 339897 CNN2P6 - - HGNC:39531 3 3p23 calponin 2 pseudogene 6 pseudo CNN2P6 calponin 2 pseudogene 6 O - 20121230 -9606 339902 LOC339902 hCG_1813818 - - 3 3p14.2 hCG1813818 unknown - - - - 20121017 -9606 339906 PRSS42 - TESSP2 HGNC:30716|Ensembl:ENSG00000178055|HPRD:07156|Vega:OTTHUMG00000156496 3 3p21.31 protease, serine, 42 protein-coding PRSS42 protease, serine, 42 O putative testis serine protease 2|serine protease 42|testis serine protease 2 20121230 -9606 339910 MRPS35P1 - - HGNC:29768 3 3p25.3 mitochondrial ribosomal protein S35 pseudogene 1 pseudo MRPS35P1 mitochondrial ribosomal protein S35 pseudogene 1 O - 20121230 -9606 339926 EHHADH-AS1 - - HGNC:44133 3 3q27.2 EHHADH antisense RNA 1 miscRNA EHHADH-AS1 EHHADH antisense RNA 1 O - 20121230 -9606 339929 LPP-AS2 - - HGNC:27952 3 3q27.3 LPP antisense RNA 2 miscRNA LPP-AS2 LPP antisense RNA 2 O - 20121230 -9606 339942 H1FX-AS1 - C3orf47 HGNC:27953|HPRD:18785 3 3q21.3 H1FX antisense RNA 1 miscRNA H1FX-AS1 H1FX antisense RNA 1 O - 20121230 -9606 339965 CCDC158 - - HGNC:26374|Ensembl:ENSG00000163749|HPRD:13395|Vega:OTTHUMG00000160916 4 4q21.1 coiled-coil domain containing 158 protein-coding CCDC158 coiled-coil domain containing 158 O coiled-coil domain-containing protein 158 20121230 -9606 339966 LOC339966 - - - 4 4q21.1 ubiquitin family domain containing 1 pseudogene pseudo - - - - 20121230 -9606 339967 TMPRSS11A - ECRG1 HGNC:27954|MIM:611704|Ensembl:ENSG00000187054|HPRD:07123|Vega:OTTHUMG00000129303 4 4q13.2 transmembrane protease, serine 11A protein-coding TMPRSS11A transmembrane protease, serine 11A O airway trypsin-like protease 1|epidermal type II transmembrane serine protease|epidermal type-II transmembrane serine protease|esophageal cancer-susceptibility gene 1 protein|transmembrane protease serine 11A 20121230 -9606 339970 GCOM2 - GLURR2|GRINL1B HGNC:15712|MIM:608311 4 4q12 GRINL1B complex locus 2, pseudogene pseudo GCOM2 GRINL1B complex locus 2, pseudogene O - 20121230 -9606 339975 LOC339975 - - - 4 4q35.2 uncharacterized LOC339975 miscRNA - - - - 20121230 -9606 339976 TRIML1 - RNF209 HGNC:26698|Ensembl:ENSG00000184108|HPRD:08774|Vega:OTTHUMG00000160237 4 4q35.2 tripartite motif family-like 1 protein-coding TRIML1 tripartite motif family-like 1 O RING finger protein 209|probable E3 ubiquitin-protein ligase TRIML1|tripartite motif family-like protein 1 20121230 -9606 339977 LRRC66 - - HGNC:34299|Ensembl:ENSG00000188993|HPRD:18593|Vega:OTTHUMG00000160623 4 4q12 leucine rich repeat containing 66 protein-coding LRRC66 leucine rich repeat containing 66 O leucine-rich repeat-containing protein 66 20121230 -9606 339978 LOC339978 - - - 4 4q12 uncharacterized LOC339978 unknown - - - - 20120508 -9606 339983 NAT8L - CML3|NACED|NAT8-LIKE HGNC:26742|MIM:610647|Ensembl:ENSG00000185818|HPRD:08224 4 4p16.3 N-acetyltransferase 8-like (GCN5-related, putative) protein-coding NAT8L N-acetyltransferase 8-like (GCN5-related, putative) O N-acetylaspartate synthetase|NAA synthetase|camello-like protein 3 20121230 -9606 339988 LOC339988 - - - 4 4p16.1 uncharacterized LOC339988 unknown - - - - 20120508 -9606 340017 LOC340017 - - - 4 4q32.1 uncharacterized LOC340017 miscRNA - - - - 20121230 -9606 340024 SLC6A19 - B0AT1|HND HGNC:27960|MIM:608893|Ensembl:ENSG00000174358|HPRD:10596|Vega:OTTHUMG00000161636 5 5p15.33 solute carrier family 6 (neutral amino acid transporter), member 19 protein-coding SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 O sodium-dependent amino acid transporter system B0|sodium-dependent neutral amino acid transporter B(0)AT1|solute carrier family 6 (neurotransmitter transporter), member 19|solute carrier family 6 member 19|system B(0) neutral amino acid transporter AT1|system B0 neutral amino acid transporter 20121230 -9606 340037 PRR7-AS1 - - HGNC:27961 5 5q35.3 PRR7 antisense RNA 1 miscRNA PRR7-AS1 PRR7 antisense RNA 1 O - 20121230 -9606 340061 TMEM173 - ERIS|MITA|MPYS|NET23|STING HGNC:27962|MIM:612374|Ensembl:ENSG00000184584|HPRD:14173|Vega:OTTHUMG00000129239 5 5q31.2 transmembrane protein 173 protein-coding TMEM173 transmembrane protein 173 O N-terminal methionine-proline-tyrosine-serine plasma membrane tetraspanner|endoplasmic reticulum IFN stimulator|endoplasmic reticulum interferon stimulator|hMITA|hSTING|mediator of IRF3 activation|mitochondrial mediator of IRF3 activation|stimulator of interferon genes protein 20121230 -9606 340069 FAM170A - ZNFD HGNC:27963|Ensembl:ENSG00000164334|HPRD:14174|Vega:OTTHUMG00000162946 5 5q23.1 family with sequence similarity 170, member A protein-coding FAM170A family with sequence similarity 170, member A O Znf domain containing protein|protein FAM170A|zinc finger domain-containing protein|zinc finger protein ZNFD 20121230 -9606 340073 LOC340073 - - - 5 5q31.2 uncharacterized LOC340073 miscRNA - - - - 20121230 -9606 340074 LOC340074 - - - 5 5q31.1 uncharacterized LOC340074 miscRNA - - - - 20121230 -9606 340075 ARSI - - HGNC:32521|MIM:610009|Ensembl:ENSG00000183876|HPRD:16510|Vega:OTTHUMG00000163479 5 5q32 arylsulfatase family, member I protein-coding ARSI arylsulfatase family, member I O ASI|arylsulfatase I 20121230 -9606 340085 LOC340085 - - - 5 5q11.2 uncharacterized LOC340085 protein-coding - - - - 20120508 -9606 340089 LOC340089 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121230 -9606 340090 LOC340090 - - - 5 5q13.3 uncharacterized LOC340090 unknown - - - - 20120508 -9606 340094 LOC340094 - - - 5 5p15.32 uncharacterized LOC340094 miscRNA - - - - 20121230 -9606 340096 H3.X - - - 5 5p15.1 histone cluster 2, H3d pseudogene pseudo - - - - 20121230 -9606 340107 LOC340107 - - - 5 5p14.1 uncharacterized LOC340107 miscRNA - - - - 20121230 -9606 340113 LOC340113 - - - 5 5p13.3 uncharacterized LOC340113 miscRNA - - - - 20121230 -9606 340120 ANKRD34B - DP58 HGNC:33736|Ensembl:ENSG00000189127|HPRD:13246|Vega:OTTHUMG00000162541 5 5q14.1 ankyrin repeat domain 34B protein-coding ANKRD34B ankyrin repeat domain 34B O ankyrin repeat domain-containing protein 34B|cytosolic phosphoprotein DP58|dendritic phosphoprotein 58 kDa 20121230 -9606 340146 SLC35D3 - FRCL1|bA55K22.3 HGNC:15621|MIM:612519|Ensembl:ENSG00000182747|HPRD:18059|Vega:OTTHUMG00000015651 6 6q23.3 solute carrier family 35, member D3 protein-coding SLC35D3 solute carrier family 35, member D3 O frc, fringe-like 1|fringe connection-like protein 1|solute carrier family 35 member D3 20121230 -9606 340152 ZC3H12D RP1-281H8.5 C6orf95|MCPIP4|TFL|dJ281H8.1|p34 HGNC:21175|MIM:611106|Ensembl:ENSG00000178199|Vega:OTTHUMG00000015786 6 6q25.1 zinc finger CCCH-type containing 12D protein-coding ZC3H12D zinc finger CCCH-type containing 12D O MCP-induced protein 4|Zinc finger CCCH domain-containing protein 12D|probable ribonuclease ZC3H12D|transformed follicular lymphoma|tumor suppressor TFL 20121230 -9606 340156 MYLK4 RP11-145H9.1 SgK085 HGNC:27972|Ensembl:ENSG00000145949|HPRD:17355|Vega:OTTHUMG00000014121 6 6p25.2 myosin light chain kinase family, member 4 protein-coding MYLK4 myosin light chain kinase family, member 4 O caMLCK like|myosin light chain kinase family member 4|sugen kinase 85 20121230 -9606 340168 DPPA5 - ESG1 HGNC:19201|MIM:611111|Ensembl:ENSG00000203909|HPRD:18786|Vega:OTTHUMG00000015025 6 6q13 developmental pluripotency associated 5 protein-coding DPPA5 developmental pluripotency associated 5 O developmental pluripotency-associated 5 protein|embryonal stem cell specific gene 1 20121230 -9606 340178 LOC340178 - - - 6 6q27 uncharacterized LOC340178 protein-coding - - - - 20120508 -9606 340184 LOC340184 - - - 6 6p24.1 uncharacterized LOC340184 protein-coding - - - - 20120508 -9606 340192 IQCB2P - IQCB1P1|dJ313I6.1 HGNC:17727 6 6p22.1 IQ motif containing B2 pseudogene pseudo IQCB2P IQ motif containing B2 pseudogene O - 20121230 -9606 340198 IFITM4P - dJ377H14.5 HGNC:21669 6 6p22.1 interferon induced transmembrane protein 4 pseudogene pseudo IFITM4P interferon induced transmembrane protein 4 pseudogene O - 20121230 -9606 340204 CLPSL1 - C6orf127|ESP32|dJ510O8.6 HGNC:21251|Ensembl:ENSG00000204140|HPRD:17356|Vega:OTTHUMG00000014582 6 6p21.31 colipase-like 1 protein-coding CLPSL1 colipase-like 1 O colipase-like protein 1|colipase-like protein C6orf127 20121230 -9606 340205 TREML1 UNQ1825/PRO3438 GLTL1825|PRO3438|TLT-1|TLT1|dJ238O23.3 HGNC:20434|MIM:609714|Ensembl:ENSG00000161911|HPRD:11645|Vega:OTTHUMG00000016231 6 6p21.1 triggering receptor expressed on myeloid cells-like 1 protein-coding TREML1 triggering receptor expressed on myeloid cells-like 1 O trem-like transcript 1 protein|triggering receptor expressed on myeloid cells-like protein 1 20121230 -9606 340206 TREML3P - TLT3|TREML3 HGNC:30806|MIM:609716 6 6p21.1 triggering receptor expressed on myeloid cells-like 3, pseudogene pseudo TREML3P triggering receptor expressed on myeloid cells-like 3, pseudogene O - 20121230 -9606 340217 NANOGP3 - - HGNC:23101 6 6p12.1 Nanog homeobox pseudogene 3 pseudo NANOGP3 Nanog homeobox pseudogene 3 O - 20121230 -9606 340221 TNRC18P3 - TNRC18C HGNC:34015 7 7p11.2 trinucleotide repeat containing 18 pseudogene 3 pseudo TNRC18P3 trinucleotide repeat containing 18 pseudogene 3 O - 20121230 -9606 340239 LOC340239 - - - 7 7q11.21 uncharacterized LOC340239 miscRNA - - - - 20120511 -9606 340252 ZNF680 - - HGNC:26897|Ensembl:ENSG00000173041|HPRD:08296|Vega:OTTHUMG00000156542 7 7q11.21 zinc finger protein 680 protein-coding ZNF680 zinc finger protein 680 O - 20121230 -9606 340260 UNCX tcag7.1272 UNCX4.1 HGNC:33194|Ensembl:ENSG00000164853|Vega:OTTHUMG00000152022 7 7p22.3 UNC homeobox protein-coding UNCX UNC homeobox O Unc4.1 homeobox|homeobox protein Uncx4.1|homeobox protein unc-4 homolog 20121230 -9606 340267 COL28A1 tcag7.1160 COL28 HGNC:22442|MIM:609996|Ensembl:ENSG00000215018|Vega:OTTHUMG00000150034 7 7p21.3 collagen, type XXVIII, alpha 1 protein-coding COL28A1 collagen, type XXVIII, alpha 1 O collagen alpha-1(XXVIII) chain 20121230 -9606 340268 LOC340268 tcag7.893 - - 7 7p21.3 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 pseudogene pseudo - - - - 20121230 -9606 340273 ABCB5 tcag7.1091 ABCB5alpha|ABCB5beta|EST422562 HGNC:46|MIM:611785|Ensembl:ENSG00000004846|Vega:OTTHUMG00000094789 7 7p21.1 ATP-binding cassette, sub-family B (MDR/TAP), member 5 protein-coding ABCB5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 O ABCB5 P-gp|ATP-binding cassette protein|ATP-binding cassette sub-family B member 5|P-glycoprotein ABCB5 20121230 -9606 340274 ASS1P11 - ASSP11 HGNC:761 7 7p15.3 argininosuccinate synthetase 1 pseudogene 11 pseudo ASS1P11 argininosuccinate synthetase 1 pseudogene 11 O - 20121230 -9606 340277 FAM221A - C7orf46 HGNC:27977|Ensembl:ENSG00000188732|HPRD:14706|Vega:OTTHUMG00000128463 7 7p15.3 family with sequence similarity 221, member A protein-coding FAM221A family with sequence similarity 221, member A O protein FAM221A|uncharacterized protein C7orf46 20121230 -9606 340286 FAM183B - - HGNC:34511 7 7p14.1 acyloxyacyl hydrolase (neutrophil) pseudo FAM183B family with sequence similarity 183, member B O - 20121230 -9606 340307 CTAGE6P - CTAGE6 HGNC:28644 7 7q35 CTAGE family, member 6, pseudogene protein-coding CTAGE6P CTAGE family, member 6, pseudogene O protein cTAGE-6|putative protein cTAGE-6 20121230 -9606 340335 LOC340335 - - - 7 7q22.1 uncharacterized LOC340335 protein-coding - - - - 20120508 -9606 340340 LOC340340 tcag7.1188 - - 7 7q22.3 uncharacterized LOC340340 unknown - - - - 20120508 -9606 340348 TSPAN33 - PEN HGNC:28743|MIM:610120|Ensembl:ENSG00000158457|HPRD:14669|Vega:OTTHUMG00000158420 7 7q32.1 tetraspanin 33 protein-coding TSPAN33 tetraspanin 33 O hPen|penumbra|proerythroblast new membrane|tetraspanin-33|tspan-33 20121230 -9606 340351 AGBL3 - - HGNC:27981|Ensembl:ENSG00000146856|HPRD:14175|Vega:OTTHUMG00000155406 7 7q33 ATP/GTP binding protein-like 3 protein-coding AGBL3 ATP/GTP binding protein-like 3 O ATP/GTP-binding protein-like 3|cytosolic carboxypeptidase 3 20121230 -9606 340357 LOC340357 - - - 8 8p23.1 uncharacterized LOC340357 miscRNA - - - - 20121230 -9606 340359 KLHL38 - C8ORFK36 HGNC:34435|Ensembl:ENSG00000175946|Vega:OTTHUMG00000164983 8 8q24.13 kelch-like 38 (Drosophila) protein-coding KLHL38 kelch-like 38 (Drosophila) O kelch-like protein 38 20121230 -9606 340371 NRBP2 PP9320 TRG16|pp9320 HGNC:19339|Ensembl:ENSG00000185189|HPRD:14838|Vega:OTTHUMG00000165157 8 8q24.3 nuclear receptor binding protein 2 protein-coding NRBP2 nuclear receptor binding protein 2 O nuclear receptor-binding protein 2|transformation-related protein 16 20121230 -9606 340385 ZNF517 - - HGNC:27984|Ensembl:ENSG00000197363|HPRD:15815|Vega:OTTHUMG00000165199 8 8q24.3 zinc finger protein 517 protein-coding ZNF517 zinc finger protein 517 O - 20121230 -9606 340390 KIAA1875 - - HGNC:26959|HPRD:11168 8 8q24.3 KIAA1875 miscRNA KIAA1875 KIAA1875 O - 20121230 -9606 340393 TMEM249 - C8ORFK29 HGNC:44155|Ensembl:ENSG00000214597|Vega:OTTHUMG00000165167 8 8q24.3 transmembrane protein 249 protein-coding TMEM249 transmembrane protein 249 O putative transmembrane protein C8orfK29 20121230 -9606 340414 EXTL3-AS1 - C8orf50 HGNC:27985 8 8p21.1 EXTL3 antisense RNA 1 miscRNA EXTL3-AS1 EXTL3 antisense RNA 1 O - 20121021 -9606 340419 RSPO2 UNQ9384/PRO34209 CRISTIN2 HGNC:28583|MIM:610575|Ensembl:ENSG00000147655|HPRD:17536|Vega:OTTHUMG00000164893 8 8q23.1 R-spondin 2 protein-coding RSPO2 R-spondin 2 O R-spondin 2 homolog|R-spondin-2|roof plate-specific spondin-2 20121230 -9606 340441 POTEA - A26A1|CT104.3|POTE-8|POTE8 HGNC:33893|MIM:608915|HPRD:12330 8 8p11.1 POTE ankyrin domain family, member A protein-coding POTEA POTE ankyrin domain family, member A O ANKRD26-like family A member 1|ANKRD26-like family A, member 1|POTE ankyrin domain family member A|cancer/testis antigen family 104, member 3|prostate, ovary, testis-expressed protein on chromosome 8|protein expressed in prostate, ovary, testis, and placenta 8 20121230 -9606 340443 RPS5P5 - RPS5_2_920 HGNC:35626 8 8q21.13 ribosomal protein S5 pseudogene 5 pseudo RPS5P5 ribosomal protein S5 pseudogene 5 O - 20121230 -9606 340451 CPP - - HGNC:2322 8 8q21.3 ceruloplasmin (ferroxidase) pseudogene pseudo CPP ceruloplasmin (ferroxidase) pseudogene O - 20121230 -9606 340460 KRT18P24 - - HGNC:33393 9 9q21.31 keratin 18 pseudogene 24 pseudo KRT18P24 keratin 18 pseudogene 24 O - 20121230 -9606 340481 ZDHHC21 - 9130404H11Rik|DHHC-21|DHHC21|DNZ1|HSPC097 HGNC:20750|MIM:614605|Ensembl:ENSG00000175893|HPRD:15716|Vega:OTTHUMG00000019573 9 9p22.3 zinc finger, DHHC-type containing 21 protein-coding ZDHHC21 zinc finger, DHHC-type containing 21 O palmitoyltransferase ZDHHC21|probable palmitoyltransferase ZDHHC21|zinc finger DHHC domain-containing protein 21|zinc finger, DHHC domain containing 21 20121230 -9606 340485 ACER2 RP11-363E7.1 ALKCDase2|ASAH3L HGNC:23675|MIM:613492|Ensembl:ENSG00000177076|HPRD:16512|Vega:OTTHUMG00000019644 9 9p22.1 alkaline ceramidase 2 protein-coding ACER2 alkaline ceramidase 2 O alkCDase 2|alkaline CDase 2|ceramide hydrolase|haCER2 20121230 -9606 340499 IMPDH1P1 - bA537H15.4 HGNC:19912 9 9p13.3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 1 pseudo IMPDH1P1 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 1 O - 20121230 -9606 340501 TCEA1P3 - - HGNC:30569 9 9p13.1 transcription elongation factor A (SII), 1 pseudogene 3 pseudo TCEA1P3 transcription elongation factor A (SII), 1 pseudogene 3 O - 20121230 -9606 340508 LOC340508 - - - 9 9q22.33 growth arrest-specific 2 like 1 pseudogene pseudo - - - - 20121230 -9606 340512 LOC340512 - - - 9 9q31.3 uncharacterized LOC340512 miscRNA - - - - 20120622 -9606 340515 LOC340515 - - - 9 9q22.2 uncharacterized LOC340515 miscRNA - - - - 20121230 -9606 340526 RGAG4 RP11-262D11.3 6430402L03Rik|MAR5|MART5 HGNC:29430|Ensembl:ENSG00000242732|HPRD:18594|Vega:OTTHUMG00000021808 X Xq13.1 retrotransposon gag domain containing 4 protein-coding RGAG4 retrotransposon gag domain containing 4 O retrotransposon gag domain-containing protein 4 20121230 -9606 340527 NHSL2 RP11-262D11.5 - HGNC:33737|Ensembl:ENSG00000204131|HPRD:15001 X Xq13.1 NHS-like 2 protein-coding NHSL2 NHS-like 2 O NHS-like protein 2 20121230 -9606 340529 PABPC1L2A RP11-493K23.3 RBM32A HGNC:27989|Ensembl:ENSG00000186288|HPRD:15178|Vega:OTTHUMG00000021824 X Xq13.2 poly(A) binding protein, cytoplasmic 1-like 2A protein-coding PABPC1L2A poly(A) binding protein, cytoplasmic 1-like 2A O RNA binding motif protein 32A|RNA-binding motif protein 32|RNA-binding protein 32|polyadenylate-binding protein 1-like 2 20121230 -9606 340533 KIAA2022 RP11-130N24.1 - HGNC:29433|MIM:300524|Ensembl:ENSG00000050030|HPRD:15957|Vega:OTTHUMG00000021860 X Xq13.3 KIAA2022 protein-coding KIAA2022 KIAA2022 O uncharacterized protein KIAA2022 20121230 -9606 340542 BEX5 GHc-351F8.1 NGFRAP1L1 HGNC:27990|MIM:300693|Ensembl:ENSG00000184515|HPRD:18484|Vega:OTTHUMG00000022049 X Xq22.1 brain expressed, X-linked 5 protein-coding BEX5 brain expressed, X-linked 5 O BEX family member 5|NGFRAP1-like 1|NGFRAP1-like protein 1|brain-expressed X-linked protein 5|nerve growth factor receptor-associated protein 2|protein BEX5 20121230 -9606 340543 TCEAL5 LL0XNC01-177E8.1 - HGNC:22282|Ensembl:ENSG00000204065|HPRD:18502|Vega:OTTHUMG00000022092 X Xq22.1 transcription elongation factor A (SII)-like 5 protein-coding TCEAL5 transcription elongation factor A (SII)-like 5 O TCEA-like protein 5|transcription elongation factor A protein-like 5|transcription elongation factor S-II protein-like 5 20121230 -9606 340544 MORF4L2-AS1 - - HGNC:27991 X Xq22.2 MORF4L2 antisense RNA 1 miscRNA MORF4L2-AS1 MORF4L2 antisense RNA 1 O - 20121230 -9606 340547 VSIG1 RP5-889N15.1 1700062D20Rik|GPA34|dJ889N15.1 HGNC:28675|MIM:300620|Ensembl:ENSG00000101842|HPRD:06655|Vega:OTTHUMG00000022175 X Xq22.3 V-set and immunoglobulin domain containing 1 protein-coding VSIG1 V-set and immunoglobulin domain containing 1 O V-set and immunoglobulin domain-containing protein 1|cell surface A33 antigen|glycoprotein A34 20121230 -9606 340554 ZC3H12B RP3-475B7.1 CXorf32|MCPIP2 HGNC:17407|MIM:300889|Ensembl:ENSG00000102053|HPRD:16774|Vega:OTTHUMG00000021719 X Xq12 zinc finger CCCH-type containing 12B protein-coding ZC3H12B zinc finger CCCH-type containing 12B O MCP-induced protein 2|probable ribonuclease ZC3H12B|zinc finger CCCH domain-containing protein 12B 20121230 -9606 340562 SATL1 RP3-388N15.1 - HGNC:27992|Ensembl:ENSG00000184788|HPRD:18497|Vega:OTTHUMG00000021931 X Xq21.1 spermidine/spermine N1-acetyl transferase-like 1 protein-coding SATL1 spermidine/spermine N1-acetyl transferase-like 1 O spermidine/spermine N(1)-acetyltransferase-like protein 1 20121230 -9606 340569 LOC340569 - - - X Xp21.3 origin recognition complex, subunit 1 pseudogene pseudo - - - - 20121230 -9606 340571 SIAH1P1 RP11-69O16.1 SIAH1L HGNC:30966 X Xp21.1 siah E3 ubiquitin protein ligase 1 pseudogene 1 pseudo SIAH1P1 siah E3 ubiquitin protein ligase 1 pseudogene 1 O - 20121230 -9606 340578 DCAF12L2 RP11-13E5.1 WDR40C HGNC:32950|Ensembl:ENSG00000198354|HPRD:15323|Vega:OTTHUMG00000022348 X Xq25 DDB1 and CUL4 associated factor 12-like 2 protein-coding DCAF12L2 DDB1 and CUL4 associated factor 12-like 2 O DDB1- and CUL4-associated factor 12-like protein 2|WD repeat-containing protein 40C 20121230 -9606 340581 LOC340581 - - - X Xq26.3 uncharacterized LOC340581 unknown - - - - 20120508 -9606 340591 CA5BP1 - CA5BL|CA5BP|PRO2325 HGNC:29544 X Xp22.2 carbonic anhydrase VB pseudogene 1 pseudo CA5BP1 carbonic anhydrase VB pseudogene 1 O - 20121230 -9606 340595 ZCCHC16 - Mar4|Mart4 HGNC:25214|HPRD:17003 X Xq23 zinc finger, CCHC domain containing 16 protein-coding ZCCHC16 zinc finger, CCHC domain containing 16 O mammalian retrotransposon-derived protein 4|zinc finger CCHC domain-containing protein 16 20121230 -9606 340596 LHFPL1 UNQ5824/PRO19643 - HGNC:6587|MIM:300566|Ensembl:ENSG00000182508|HPRD:06610|Vega:OTTHUMG00000022214 X Xq23 lipoma HMGIC fusion partner-like 1 protein-coding LHFPL1 lipoma HMGIC fusion partner-like 1 O LHFP-like protein 1|lipoma HMGIC fusion partner-like 1 protein 20121230 -9606 340598 KRT18P48 - - HGNC:33418 X Xq28 keratin 18 pseudogene 48 pseudo KRT18P48 keratin 18 pseudogene 48 O - 20121230 -9606 340600 ATF4P2 - - HGNC:34025 X Xq28 activating transcription factor 4 pseudogene 2 pseudo ATF4P2 activating transcription factor 4 pseudogene 2 O - 20121230 -9606 340602 CXorf67 - - HGNC:33738|HPRD:14176 X Xp11.22 chromosome X open reading frame 67 unknown CXorf67 chromosome X open reading frame 67 O - 20121230 -9606 340618 FAM41AY1 - FAM41AY HGNC:23955 Y Yq11.221 family with sequence similarity 41, member A, Y-linked 1 miscRNA FAM41AY1 family with sequence similarity 41, member A, Y-linked 1 O - 20121209 -9606 340654 LIPM RP11-304I5.1 LIPL3|bA304I5.1 HGNC:23455|MIM:613923|Ensembl:ENSG00000173239|Vega:OTTHUMG00000018698 10 10q23.31 lipase, family member M protein-coding LIPM lipase, family member M O lipase M|lipase member M|lipase-like abhydrolase domain-containing protein 3|lipase-like, ab-hydrolase domain containing 3 20121230 -9606 340665 CYP26C1 - - HGNC:20577|MIM:608428|Ensembl:ENSG00000187553|HPRD:12230|Vega:OTTHUMG00000018766 10 10q23.33 cytochrome P450, family 26, subfamily C, polypeptide 1 protein-coding CYP26C1 cytochrome P450, family 26, subfamily C, polypeptide 1 O cytochrome P450 26C1 20121230 -9606 340706 VWA2 - AMACO|CCSP-2|NET42 HGNC:24709|Ensembl:ENSG00000165816|HPRD:16481|Vega:OTTHUMG00000019082 10 10q25.3 von Willebrand factor A domain containing 2 protein-coding VWA2 von Willebrand factor A domain containing 2 O A-domain containing protein similar to matrilin and collagen|a domain-containing protein similar to matrilin and collagen|colon cancer diagnostic marker|colon cancer secreted protein 2|colon cancer secreted protein-2|von Willebrand factor A domain-containing protein 2 20121230 -9606 340719 NANOS1 RP11-498J9.3 NOS1 HGNC:23044|MIM:608226|Ensembl:ENSG00000188613|HPRD:16302|Vega:OTTHUMG00000019141 10 10q26.11 nanos homolog 1 (Drosophila) protein-coding NANOS1 nanos homolog 1 (Drosophila) O EC_Rep1a|NOS-1|nanos homolog 1 20121230 -9606 340745 LRIT2 - LRRC22 HGNC:23443|Ensembl:ENSG00000204033|HPRD:18595|Vega:OTTHUMG00000018633 10 10q23.1 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 protein-coding LRIT2 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 O leucine rich repeat containing 22|leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2|leucine-rich repeat-containing protein 22 20121230 -9606 340749 RPL7AP8 - RPL7A_24_1075|bA141D8.1 HGNC:23738 10 10q23.2 ribosomal protein L7a pseudogene 8 pseudo RPL7AP8 ribosomal protein L7a pseudogene 8 O - 20121230 -9606 340780 IMPDH1P5 - - HGNC:33960 10 10q22.3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 5 pseudo IMPDH1P5 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 5 O - 20121230 -9606 340784 HMX3 - NKX-5.1|NKX5.1|Nkx5-1 HGNC:5019|MIM:613380|Ensembl:ENSG00000188620|Vega:OTTHUMG00000019199 10 10q26.13 H6 family homeobox 3 protein-coding HMX3 H6 family homeobox 3 O homeo box (H6 family) 3|homeobox (H6 family) 3|homeobox protein H6 family member 3|homeobox protein HMX3|homeobox protein Nkx-5.1 20121230 -9606 340811 AKR1CL1 - - HGNC:23469|HPRD:16480 10 10p15.1 aldo-keto reductase family 1, member C-like 1 pseudo AKR1CL1 aldo-keto reductase family 1, member C-like 1 O - 20121230 -9606 340844 LOC340844 - - - 10 10q11.22 adenosylhomocysteinase pseudogene pseudo - - - - 20121230 -9606 340888 LOC340888 - - - 10 10q21.3 aldo-keto reductase family 1, member B10 (aldose reductase) pseudogene pseudo - - - - 20121230 -9606 340895 C10orf112 - bA265G8.2 HGNC:24331 10 10p12.31 chromosome 10 open reading frame 112 protein-coding C10orf112 chromosome 10 open reading frame 112 O MAM and LDL-receptor class A domain-containing protein C10orf112|MAM and LDL-receptor class A domain-containing protein C10orf112-like|novel MAM domain containing protein 20121230 -9606 340900 EBLN1 - EBLN-1 HGNC:39430|MIM:613249 10 10p12.31 endogenous Bornavirus-like nucleoprotein 1 protein-coding EBLN1 endogenous Bornavirus-like nucleoprotein 1 O endogenous Borna-like N element 1|endogenous Borna-like N element-1|endogenous Borna-like N element-containing protein 1 20121230 -9606 340947 EIF3LP3 - - HGNC:44976 10 10p11.1 eukaryotic translation initiation factor 3, subunit L pseudogene 3 pseudo EIF3LP3 eukaryotic translation initiation factor 3, subunit L pseudogene 3 O - 20121230 -9606 340970 TRIM53CP - - HGNC:43979 11 11p11.12 tripartite motif containing 53C, pseudogene pseudo TRIM53CP tripartite motif containing 53C, pseudogene O - 20121230 -9606 340980 OR52B6 - OR11-47 HGNC:15211|Ensembl:ENSG00000187747|HPRD:17743|Vega:OTTHUMG00000066906 11 11p15.4 olfactory receptor, family 52, subfamily B, member 6 protein-coding OR52B6 olfactory receptor, family 52, subfamily B, member 6 O olfactory receptor 52B6|olfactory receptor OR11-47 20121230 -9606 340990 OTOG - DFNB18B|OTGN|mlemp HGNC:8516|MIM:604487|Ensembl:ENSG00000188162|Vega:OTTHUMG00000149905 11 11p15.1 otogelin protein-coding OTOG otogelin O - 20121230 -9606 341019 DCDC1 RP4-535H23.2 - HGNC:20625|MIM:608062|Ensembl:ENSG00000188682|HPRD:12158|Vega:OTTHUMG00000150144 11 11p13 doublecortin domain containing 1 protein-coding DCDC1 doublecortin domain containing 1 O doublecortin domain-containing protein 1 20121230 -9606 341032 C11orf53 - - HGNC:30527|Ensembl:ENSG00000150750|HPRD:14663|Vega:OTTHUMG00000166656 11 11q23.1 chromosome 11 open reading frame 53 protein-coding C11orf53 chromosome 11 open reading frame 53 O uncharacterized protein C11orf53 20121230 -9606 341056 LOC341056 - - - 11 11q24.1 SUMO1 activating enzyme subunit 1 pseudogene pseudo - - - - 20121230 -9606 341112 LOC341112 - - - 11 11q12.1 tryptophanyl-tRNA synthetase, cytoplasmic-like protein-coding - - - - 20120818 -9606 341116 MS4A10 - CD20L7|MS4A9 HGNC:13368|MIM:608403|Ensembl:ENSG00000172689|HPRD:16330|Vega:OTTHUMG00000167689 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 10 protein-coding MS4A10 membrane-spanning 4-domains, subfamily A, member 10 O CD20 antigen-like 7|membrane-spanning 4-domains subfamily A member 10 20121230 -9606 341128 OR7E1P - - HGNC:8391 11 11q13.2 olfactory receptor, family 7, subfamily E, member 1 pseudogene pseudo OR7E1P olfactory receptor, family 7, subfamily E, member 1 pseudogene O - 20121230 -9606 341148 CYCSP27 - HCP27 HGNC:24401 11 11q13.4 cytochrome c, somatic pseudogene 27 pseudo CYCSP27 cytochrome c, somatic pseudogene 27 O - 20121230 -9606 341152 OR2AT4 - OR11-265 HGNC:19620|Ensembl:ENSG00000171561|HPRD:17694|Vega:OTTHUMG00000165370 11 11q13.4 olfactory receptor, family 2, subfamily AT, member 4 protein-coding OR2AT4 olfactory receptor, family 2, subfamily AT, member 4 O olfactory receptor 2AT4|olfactory receptor OR11-265 pseudogene 20121230 -9606 341208 HEPHL1 - - HGNC:30477|Ensembl:ENSG00000181333|Vega:OTTHUMG00000167751 11 11q21 hephaestin-like 1 protein-coding HEPHL1 hephaestin-like 1 O hephaestin-like protein 1 20121230 -9606 341230 ASS1P13 - ASSP13 HGNC:763 11 11q22.3 argininosuccinate synthetase 1 pseudogene 13 pseudo ASS1P13 argininosuccinate synthetase 1 pseudogene 13 O - 20121230 -9606 341276 OR10A2 - OR10A2P|OR11-82|OR11-86|OST363 HGNC:8161|Ensembl:ENSG00000170790|HPRD:17663|Vega:OTTHUMG00000165739 11 11p15.4 olfactory receptor, family 10, subfamily A, member 2 protein-coding OR10A2 olfactory receptor, family 10, subfamily A, member 2 O hP4 olfactory receptor|olfactory receptor 10A2|olfactory receptor OR11-82 pseudogene|olfactory receptor OR11-86|olfactory receptor, family 10, subfamily A, member 2 pseudogene 20121230 -9606 341277 OVCH2 - OVTN HGNC:29970|Ensembl:ENSG00000183378|HPRD:07139|Vega:OTTHUMG00000165418 11 11p15.4 ovochymase 2 (gene/pseudogene) protein-coding OVCH2 ovochymase 2 (gene/pseudogene) O oviductin protease|ovochymase-2 20121230 -9606 341315 PABPC1P4 - PABPCP5|PABPL2 HGNC:8563|MIM:604681 12 12q14.2 poly(A) binding protein, cytoplasmic 1 pseudogene 4 pseudo PABPC1P4 poly(A) binding protein, cytoplasmic 1 pseudogene 4 O - 20121230 -9606 341333 LOC341333 - - - 12 12q15 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 341346 C12orf70 - - HGNC:34448|Ensembl:ENSG00000165935|Vega:OTTHUMG00000169205 12 12p11.23 chromosome 12 open reading frame 70 protein-coding C12orf70 chromosome 12 open reading frame 70 O uncharacterized protein C12orf70 20121230 -9606 341350 OVCH1 - OVCH HGNC:23080|Ensembl:ENSG00000187950|HPRD:07138|Vega:OTTHUMG00000167741 12 12p11.22 ovochymase 1 protein-coding OVCH1 ovochymase 1 O ovochymase-1 20121230 -9606 341356 RPL31P50 hCG_1644239 RPL31_16_1224 HGNC:36799 12 12p11.21 ribosomal protein L31 pseudogene 50 pseudo RPL31P50 ribosomal protein L31 pseudogene 50 O - 20121230 -9606 341359 SYT10 - - HGNC:19266|Ensembl:ENSG00000110975|HPRD:15460|Vega:OTTHUMG00000169269 12 12p11.1 synaptotagmin X protein-coding SYT10 synaptotagmin X O synaptotagmin 10|synaptotagmin-10|sytX 20121230 -9606 341378 LOC341378 - - - 12 12q23.3 thyroid hormone receptor interactor 11 pseudogene pseudo - - - - 20121230 -9606 341392 ACSM4 - - HGNC:32016|MIM:614360|Ensembl:ENSG00000215009|Vega:OTTHUMG00000154975 12 12p13.31 acyl-CoA synthetase medium-chain family member 4 protein-coding ACSM4 acyl-CoA synthetase medium-chain family member 4 O acyl-coenzyme A synthetase ACSM4, mitochondrial 20121230 -9606 341405 ANKRD33 - C12orf7|PANKY HGNC:13788|Ensembl:ENSG00000167612|HPRD:12465|Vega:OTTHUMG00000169506 12 12q13.13 ankyrin repeat domain 33 protein-coding ANKRD33 ankyrin repeat domain 33 O ankyrin repeat domain-containing protein 33 20121230 -9606 341416 OR6C2 - OR6C67 HGNC:15436|Ensembl:ENSG00000179695|HPRD:17773|Vega:OTTHUMG00000169957 12 12q13.2 olfactory receptor, family 6, subfamily C, member 2 protein-coding OR6C2 olfactory receptor, family 6, subfamily C, member 2 O HSA3|olfactory receptor 6C2 20121230 -9606 341418 OR6C4 - OR12-10 HGNC:19632|Ensembl:ENSG00000179626|HPRD:17774|Vega:OTTHUMG00000169959 12 12q13.2 olfactory receptor, family 6, subfamily C, member 4 protein-coding OR6C4 olfactory receptor, family 6, subfamily C, member 4 O olfactory receptor 6C4|olfactory receptor OR12-10 20121230 -9606 341457 PPIAP8 - PPIP8 HGNC:9271 12 12q23.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 8 pseudo PPIAP8 peptidylprolyl isomerase A (cyclophilin A) pseudogene 8 O - 20121230 -9606 341469 MRPS7P2 - - HGNC:29784 12 12p13.1 mitochondrial ribosomal protein S7 pseudogene 2 pseudo MRPS7P2 mitochondrial ribosomal protein S7 pseudogene 2 O - 20121230 -9606 341511 RPL23AP14 hCG_1642354 RPL23A_29_1192 HGNC:21007 12 12p13.33 ribosomal protein L23a pseudogene 14 pseudo RPL23AP14 ribosomal protein L23a pseudogene 14 O - 20121230 -9606 341567 H1FNT - H1T2 HGNC:24893|Ensembl:ENSG00000187166|HPRD:17084|Vega:OTTHUMG00000169904 12 12q13.11 H1 histone family, member N, testis-specific protein-coding H1FNT H1 histone family, member N, testis-specific O HANP1|haploid germ cell-specific nuclear protein 1|histone H1t2|testis-specific H1 histone 20121230 -9606 341568 OR8S1 - - HGNC:19628|Ensembl:ENSG00000197376|HPRD:15087|Vega:OTTHUMG00000170021 12 12q13.11 olfactory receptor, family 8, subfamily S, member 1 protein-coding OR8S1 olfactory receptor, family 8, subfamily S, member 1 O olfactory receptor 8S1 20121230 -9606 341604 RPL35P7 - RPL35_2_1335 HGNC:35740 13 13q33.3 ribosomal protein L35 pseudogene 7 pseudo RPL35P7 ribosomal protein L35 pseudogene 7 O - 20121230 -9606 341640 FREM2 - - HGNC:25396|MIM:608945|Ensembl:ENSG00000150893|HPRD:10602|Vega:OTTHUMG00000016759 13 13q13.3 FRAS1 related extracellular matrix protein 2 protein-coding FREM2 FRAS1 related extracellular matrix protein 2 O ECM3 homolog|FRAS1-related extracellular matrix protein 2 20121230 -9606 341674 RPL5P31 - - HGNC:42036 13 13q14.3 ribosomal protein L5 pseudogene 31 pseudo RPL5P31 ribosomal protein L5 pseudogene 31 O - 20121230 -9606 341676 NEK5 - - HGNC:7748|Ensembl:ENSG00000197168|Vega:OTTHUMG00000016957 13 13q14.3 NIMA-related kinase 5 protein-coding NEK5 NIMA-related kinase 5 O NIMA (never in mitosis gene a)-related kinase 5|never in mitosis A-related kinase 5|nimA-related protein kinase 5|serine/threonine-protein kinase Nek5 20121230 -9606 341689 CTAGE16P - - HGNC:41967 13 13q21.1 CTAGE family, member 16, pseudogene pseudo CTAGE16P CTAGE family, member 16, pseudogene O - 20121230 -9606 341757 MRPS31P2 - - HGNC:39252 13 13q12.11 mitochondrial ribosomal protein S31 pseudogene 2 pseudo MRPS31P2 mitochondrial ribosomal protein S31 pseudogene 2 O - 20121230 -9606 341784 EIF4A1P7 - - HGNC:37926 13 13q12.3 eukaryotic translation initiation factor 4A1 pseudogene 7 pseudo EIF4A1P7 eukaryotic translation initiation factor 4A1 pseudogene 7 O - 20121230 -9606 341799 OR6S1 - OR14-37|OR6S1Q HGNC:15363|Ensembl:ENSG00000181803|HPRD:17779|Vega:OTTHUMG00000171010 14 14q11.2 olfactory receptor, family 6, subfamily S, member 1 protein-coding OR6S1 olfactory receptor, family 6, subfamily S, member 1 O olfactory receptor 6S1|olfactory receptor OR14-37 20121230 -9606 341880 SLC35F4 - C14orf36|c14_5373 HGNC:19845|Ensembl:ENSG00000151812|Vega:OTTHUMG00000171317 14 14q22.2 solute carrier family 35, member F4 protein-coding SLC35F4 solute carrier family 35, member F4 O solute carrier family 35 member F4 20121230 -9606 341883 LRRC9 - - HGNC:19848|HPRD:13525 14 14q23.1 leucine rich repeat containing 9 miscRNA LRRC9 leucine rich repeat containing 9 O - 20121230 -9606 341947 COX8C - COX8-3 HGNC:24382|Ensembl:ENSG00000187581|HPRD:13090|Vega:OTTHUMG00000171279 14 14q32.12 cytochrome c oxidase subunit VIIIC protein-coding COX8C cytochrome c oxidase subunit VIIIC O COX VIII-3|cytochrome c oxidase polypeptide 8|cytochrome c oxidase polypeptide VIII|cytochrome c oxidase subunit 8-3|cytochrome c oxidase subunit 8C, mitochondrial|cytochrome c oxidase subunit VIII 20121230 -9606 341965 VDAC3P1 - VDAC3P HGNC:20722 14 14q32.2 voltage-dependent anion channel 3 pseudogene 1 pseudo VDAC3P1 voltage-dependent anion channel 3 pseudogene 1 O - 20121230 -9606 342035 GLDN UNQ9339/PRO34011 CLOM|COLM|CRG-L2|CRGL2|UNC-112 HGNC:29514|MIM:608603|Ensembl:ENSG00000186417|HPRD:12267|Vega:OTTHUMG00000131746 15 15q21.2 gliomedin protein-coding GLDN gliomedin O collomin|colmedin 20121230 -9606 342096 GOLGA6A - GLP|GOLGA6 HGNC:13567|MIM:610288|Ensembl:ENSG00000159289|Vega:OTTHUMG00000173035 15 15q24.1 golgin A6 family, member A protein-coding GOLGA6A golgin A6 family, member A O Golgin linked to PML|Golgin subfamily A member 6A|golgi autoantigen, golgin subfamily a, 6|golgi autoantigen, golgin subfamily a, 6A|golgi autoantigen, golgin subfamily a, member 6|golgin-like protein 20121230 -9606 342125 TMC3 - - HGNC:22995|Ensembl:ENSG00000188869|Vega:OTTHUMG00000172314 15 15q25.1 transmembrane channel-like 3 protein-coding TMC3 transmembrane channel-like 3 O transmembrane channel-like protein 3 20121230 -9606 342132 ZNF774 - - HGNC:33108|Ensembl:ENSG00000196391|HPRD:17571|Vega:OTTHUMG00000172359 15 15q26.1 zinc finger protein 774 protein-coding ZNF774 zinc finger protein 774 O - 20121230 -9606 342184 FMN1 - FMN|LD HGNC:3768|MIM:136535|Ensembl:ENSG00000248905|HPRD:07031|Vega:OTTHUMG00000172201 15 15q13.3 formin 1 protein-coding FMN1 formin 1 O formin (limb deformity)|formin-1|limb deformity protein homolog 20121230 -9606 342293 LOC342293 - - - 16 16p12.2 ATP-binding cassette, sub-family A (ABC1), member 3 pseudogene pseudo - - - - 20121230 -9606 342346 C16orf96 - - HGNC:40031|Ensembl:ENSG00000205832|Vega:OTTHUMG00000176519 16 16p13.3 chromosome 16 open reading frame 96 protein-coding C16orf96 chromosome 16 open reading frame 96 O putative uncharacterized protein C16orf96 20121230 -9606 342357 ZKSCAN2 - ZNF694|ZSCAN31 HGNC:25677|Ensembl:ENSG00000155592|HPRD:11268|Vega:OTTHUMG00000177180 16 16p12.1 zinc finger with KRAB and SCAN domains 2 protein-coding ZKSCAN2 zinc finger with KRAB and SCAN domains 2 O zinc finger and SCAN domain containing 31|zinc finger protein 694|zinc finger protein with KRAB and SCAN domains 2 20121230 -9606 342358 CYCSP39 - HC1|HCP39 HGNC:24412 16 16p12.1 cytochrome c, somatic pseudogene 39 pseudo CYCSP39 cytochrome c, somatic pseudogene 39 O - 20121230 -9606 342371 ATXN1L hCG_1646491 BOAT|BOAT1 HGNC:33279|MIM:614301|Ensembl:ENSG00000224470|Vega:OTTHUMG00000176872 16 16q22.2 ataxin 1-like protein-coding ATXN1L ataxin 1-like O ataxin-1-like|brother of ATXN1|brother of ataxin-1 20121230 -9606 342372 PKD1L3 - - HGNC:21716|MIM:607895|HPRD:07436 16 16q22.2 polycystic kidney disease 1-like 3 protein-coding PKD1L3 polycystic kidney disease 1-like 3 O PC1-like 3 protein|polycystic kidney disease protein 1-like 3|polycystin-1L3 20121230 -9606 342374 KRT18P18 - - HGNC:33386 16 16q22.2 keratin 18 pseudogene 18 pseudo KRT18P18 keratin 18 pseudogene 18 O - 20121230 -9606 342419 KRT8P22 - - HGNC:33374 16 16q23.1 keratin 8 pseudogene 22 pseudo KRT8P22 keratin 8 pseudogene 22 O - 20121230 -9606 342426 ZNF720P1 - - HGNC:34505 16 16p11.2 zinc finger protein 720 pseudogene 1 pseudo ZNF720P1 zinc finger protein 720 pseudogene 1 O - 20121230 -9606 342443 LOC342443 - - - 16 16p11.2 ADAM metallopeptidase domain 21 pseudogene pseudo - - - - 20121230 -9606 342510 CD300E - CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 HGNC:28874|MIM:609801|Ensembl:ENSG00000186407|HPRD:17158|Vega:OTTHUMG00000067605 17 17q25.1 CD300e molecule protein-coding CD300E CD300e molecule O CD300 antigen like family member E|CD300 antigen-like family member E|CD300e antigen|CMRF35-like molecule 2|immune receptor expressed on myeloid cells 2|poly-Ig receptor 2|polymeric immunoglobulin receptor 2 20121230 -9606 342527 SMTNL2 - - HGNC:24764|Ensembl:ENSG00000188176|HPRD:13463|Vega:OTTHUMG00000132938 17 17p13.2 smoothelin-like 2 protein-coding SMTNL2 smoothelin-like 2 O smoothelin-like protein 2 20121230 -9606 342538 NACA2 - ANAC|NACAL HGNC:23290|MIM:609274|Ensembl:ENSG00000253506|HPRD:16487|Vega:OTTHUMG00000132321 17 17q23.2 nascent polypeptide-associated complex alpha subunit 2 protein-coding NACA2 nascent polypeptide-associated complex alpha subunit 2 O IgE autoantigen alpha-nascent polypeptide-associated complex|alpha-NAC protein|hom s 2.01 protein|nascent polypeptide-associated complex subunit alpha-2|nascent polypeptide-associated complex, alpha polypeptide, 2 20121230 -9606 342541 LOC342541 - - - 17 17q23.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 342574 KRT27 - KRT25C HGNC:30841|Ensembl:ENSG00000171446|HPRD:17244|Vega:OTTHUMG00000133371 17 17q21.2 keratin 27 protein-coding KRT27 keratin 27 O CK-27|K25C|K27|cytokeratin-27|keratin 25C|keratin, type I cytoskeletal 27|keratin-25C|keratin-27|type I inner root sheath specific keratin 25 irs3|type I inner root sheath-specific keratin-K25irs3 20121230 -9606 342618 SLFN14 - - HGNC:32689|MIM:614958|Ensembl:ENSG00000236320|Vega:OTTHUMG00000179912 17 17q12 schlafen family member 14 protein-coding SLFN14 schlafen family member 14 O - 20121230 -9606 342666 LRRC37A11P - - HGNC:43815|HPRD:13478 17 17q12 leucine rich repeat containing 37, member A11, pseudogene pseudo LRRC37A11P leucine rich repeat containing 37, member A11, pseudogene O - 20121230 -9606 342667 STAC2 - 24b2|24b2/STAC2 HGNC:23990|Ensembl:ENSG00000141750|HPRD:18113|Vega:OTTHUMG00000179039 17 17q12 SH3 and cysteine rich domain 2 protein-coding STAC2 SH3 and cysteine rich domain 2 O SH3 and cysteine-rich domain-containing protein 2|SRC homology 3 and cysteine-rich domain-containing protein 2 20121230 -9606 342705 PGDP1 - PGDL1 HGNC:8892 18 18q12.1 phosphogluconate dehydrogenase pseudogene 1 pseudo PGDP1 phosphogluconate dehydrogenase pseudogene 1 O - 20121230 -9606 342732 KRT8P5 - - HGNC:31094 18 18q12.3 keratin 8 pseudogene 5 pseudo KRT8P5 keratin 8 pseudogene 5 O - 20121230 -9606 342776 MRPS17P7 - MRPS17P4|MRPS17P8 HGNC:29735 18 18q21.31 mitochondrial ribosomal protein S17 pseudogene 7 pseudo MRPS17P7 mitochondrial ribosomal protein S17 pseudogene 7 O - 20121230 -9606 342784 LOC342784 - - - 18 18q21.32 general transcription factor IIH, polypeptide 1, 62kDa pseudogene pseudo - - - - 20121230 -9606 342808 RPS2P6 - RPS2_22_1612 HGNC:25485 18 18q22.2 ribosomal protein S2 pseudogene 6 pseudo RPS2P6 ribosomal protein S2 pseudogene 6 O - 20121230 -9606 342850 ANKRD62 - DKFZp779B1634 HGNC:35241|Ensembl:ENSG00000181626|Vega:OTTHUMG00000180673 18 18p11.21 ankyrin repeat domain 62 protein-coding ANKRD62 ankyrin repeat domain 62 O ankyrin repeat domain-containing protein 62 20121230 -9606 342865 VSTM2B - - HGNC:33595|Ensembl:ENSG00000187135|Vega:OTTHUMG00000182002 19 19q12 V-set and transmembrane domain containing 2B protein-coding VSTM2B V-set and transmembrane domain containing 2B O V-set and transmembrane domain-containing protein 2B 20121230 -9606 342892 ZNF850 - ZNF850P HGNC:27994|Ensembl:ENSG00000267041|Vega:OTTHUMG00000180899 19 19q13.12 zinc finger protein 850 protein-coding ZNF850 zinc finger protein 850 O putative zinc finger protein ENSP00000330994 20121230 -9606 342897 NCCRP1 - FBXO50|NCCRP-1 HGNC:33739|Ensembl:ENSG00000188505|HPRD:17357 19 19q13.2 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) protein-coding NCCRP1 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) O non-specific cytotoxic cell receptor protein 1 homolog|nonspecific cytotoxic cell receptor protein 1 homolog 20121230 -9606 342898 SYCN - INSSA1|SYL HGNC:18442|Ensembl:ENSG00000179751 19 19q13.2 syncollin protein-coding SYCN syncollin O insulin synthesis associated 1|insulin synthesis-associated protein 1 20121230 -9606 342900 LEUTX hCG_1657112 - HGNC:31953|Ensembl:ENSG00000213921 19 19q13.2 leucine twenty homeobox protein-coding LEUTX leucine twenty homeobox O arginine-fifty homeobox-like pseudogene|leucine-twenty homeobox|putative leucine-twenty homeobox 20121230 -9606 342908 ZNF404 - - HGNC:19417|Ensembl:ENSG00000176222|HPRD:18787|Vega:OTTHUMG00000182206 19 19q13.31 zinc finger protein 404 protein-coding ZNF404 zinc finger protein 404 O - 20121230 -9606 342909 ZNF284 - ZNF284L HGNC:13078|Ensembl:ENSG00000186026|Vega:OTTHUMG00000182312 19 19q13.31 zinc finger protein 284 protein-coding ZNF284 zinc finger protein 284 O - 20121230 -9606 342918 C19orf81 - - HGNC:40041|Ensembl:ENSG00000235034|Vega:OTTHUMG00000154593 19 19q13.33 chromosome 19 open reading frame 81 protein-coding C19orf81 chromosome 19 open reading frame 81 O putative uncharacterized protein C19orf81 20121230 -9606 342926 ZNF677 - - HGNC:28730|Ensembl:ENSG00000197928|HPRD:14658 19 19q13.42 zinc finger protein 677 protein-coding ZNF677 zinc finger protein 677 O hypothetical protein MGC48625 20121230 -9606 342931 RFPL4A - RFPL4|RNF210 HGNC:16449|MIM:612601|Ensembl:ENSG00000223638|Vega:OTTHUMG00000165449 19 19q13.42 ret finger protein-like 4A protein-coding RFPL4A ret finger protein-like 4A O RING finger protein 210|ret finger protein-like 4 20121230 -9606 342933 ZSCAN5B hCG_2042202 ZNF371|ZNF495B HGNC:34246|Ensembl:ENSG00000197213|Vega:OTTHUMG00000181827 19 19q13.43 zinc finger and SCAN domain containing 5B protein-coding ZSCAN5B zinc finger and SCAN domain containing 5B O zinc finger and SCAN domain-containing protein 5B 20121230 -9606 342945 ZSCAN22 - HKR2|ZNF50 HGNC:4929|MIM:165260|Ensembl:ENSG00000182318|HPRD:01315 19 19q13.43 zinc finger and SCAN domain containing 22 protein-coding ZSCAN22 zinc finger and SCAN domain containing 22 O GLI-Kruppel family member HKR2|krueppel-related zinc finger protein 2|zinc finger and SCAN domain-containing protein 22|zinc finger protein 50 20121230 -9606 342977 NANOS3 - NANOS1L|NOS3 HGNC:22048|MIM:608229|Ensembl:ENSG00000187556|Vega:OTTHUMG00000181850 19 19p13.13 nanos homolog 3 (Drosophila) protein-coding NANOS3 nanos homolog 3 (Drosophila) O nanos homolog 3 20121230 -9606 342979 PALM3 - - HGNC:33274|Ensembl:ENSG00000187867|Vega:OTTHUMG00000181991 19 19p13.12 paralemmin 3 protein-coding PALM3 paralemmin 3 O paralemmin-3 20121230 -9606 342994 RPL34P34 - RPL34_15_1639 HGNC:35848 19 19p12 ribosomal protein L34 pseudogene 34 pseudo RPL34P34 ribosomal protein L34 pseudogene 34 O - 20121230 -9606 343035 RD3 - C1orf36|LCA12 HGNC:19689|MIM:180040|Ensembl:ENSG00000198570|HPRD:12726|Vega:OTTHUMG00000037002 1 1q32.3 retinal degeneration 3 protein-coding RD3 retinal degeneration 3 O protein RD3|retinal degeneration protein 3 20121230 -9606 343045 CYCSP51 - HCP1 HGNC:24383 1 1q21.3 cytochrome c, somatic pseudogene 51 pseudo CYCSP51 cytochrome c, somatic pseudogene 51 O - 20121230 -9606 343052 LOC343052 - - - 1 1q21.3 immunoglobulin superfamily, DCC subclass, member 3 pseudogene pseudo - - - - 20121230 -9606 343066 AADACL4 RP11-474O21.1 - HGNC:32038|Ensembl:ENSG00000204518|HPRD:15402|Vega:OTTHUMG00000001889 1 1p36.21 arylacetamide deacetylase-like 4 protein-coding AADACL4 arylacetamide deacetylase-like 4 O - 20121230 -9606 343068 PRAMEF5 - - HGNC:27995|Ensembl:ENSG00000204502|Vega:OTTHUMG00000009505 1 1p36.21 PRAME family member 5 protein-coding PRAMEF5 PRAME family member 5 O - 20121230 -9606 343069 HNRNPCL1 RP5-845O24.4 HNRPCL1 HGNC:29295|Ensembl:ENSG00000179172|HPRD:15466|Vega:OTTHUMG00000001931 1 1p36.21 heterogeneous nuclear ribonucleoprotein C-like 1 protein-coding HNRNPCL1 heterogeneous nuclear ribonucleoprotein C-like 1 O hnRNP C-like-1|hnRNP core protein C-like 1 20121230 -9606 343070 PRAMEF9 - - HGNC:27996|Ensembl:ENSG00000204501|HPRD:18596|Vega:OTTHUMG00000008035 1 1p36.21 PRAME family member 9 protein-coding PRAMEF9 PRAME family member 9 O PRAME family member 9/15 20121230 -9606 343071 PRAMEF10 - RP5-845O24.7 HGNC:27997|Ensembl:ENSG00000187545|Vega:OTTHUMG00000001981 1 1p36.21 PRAME family member 10 protein-coding PRAMEF10 PRAME family member 10 O - 20121230 -9606 343099 CCDC18 RP4-717I23.1 NY-SAR-41|dJ717I23.1 HGNC:30370|Ensembl:ENSG00000122483|Vega:OTTHUMG00000010598 1 1p22.1 coiled-coil domain containing 18 protein-coding CCDC18 coiled-coil domain containing 18 O coiled-coil domain-containing protein 18|sarcoma antigen NY-SAR-24|sarcoma antigen NY-SAR-41 20121230 -9606 343165 LOC343165 - - - 1 1q44 heat shock 70kDa protein 8 pseudogene pseudo - - - - 20121230 -9606 343169 OR6F1 - OR1-34|OR1-38|OST731 HGNC:15027|Ensembl:ENSG00000169214|HPRD:17777|Vega:OTTHUMG00000040213 1 1q44 olfactory receptor, family 6, subfamily F, member 1 protein-coding OR6F1 olfactory receptor, family 6, subfamily F, member 1 O olfactory receptor 6F1|olfactory receptor OR1-34 pseudogene|olfactory receptor OR1-38 20121230 -9606 343170 OR14K1 - OR1-39|OR1.5.9|OR5AY1 HGNC:15025|HPRD:17752 1 1q44 olfactory receptor, family 14, subfamily K, member 1 pseudo OR14K1 olfactory receptor, family 14, subfamily K, member 1 O - 20121230 -9606 343171 OR2W3 - OR2W3P|OR2W8P|OST718 HGNC:15021|Ensembl:ENSG00000238243|HPRD:17714|Vega:OTTHUMG00000040204 1 1q44 olfactory receptor, family 2, subfamily W, member 3 protein-coding OR2W3 olfactory receptor, family 2, subfamily W, member 3 O olfactory receptor 2W3|olfactory receptor 2W8|olfactory receptor OR1-49|olfactory receptor, family 2, subfamily W, member 3 pseudogene|olfactory receptor, family 2, subfamily W, member 8 pseudogene 20121230 -9606 343172 OR2T8 - OR2T8P HGNC:15020|Ensembl:ENSG00000177462|HPRD:17712|Vega:OTTHUMG00000040205 1 1q44 olfactory receptor, family 2, subfamily T, member 8 protein-coding OR2T8 olfactory receptor, family 2, subfamily T, member 8 O olfactory receptor 2T8|olfactory receptor, family 2, subfamily T, member 8 pseudogene 20121230 -9606 343173 OR2T3 - - HGNC:14727|Ensembl:ENSG00000196539|HPRD:17708|Vega:OTTHUMG00000040452 1 1q44 olfactory receptor, family 2, subfamily T, member 3 protein-coding OR2T3 olfactory receptor, family 2, subfamily T, member 3 O olfactory receptor 2T3|seven transmembrane helix receptor 20121230 -9606 343184 RPS2P11 - RPS2_3_47 HGNC:36350 1 1p32.3 ribosomal protein S2 pseudogene 11 pseudo RPS2P11 ribosomal protein S2 pseudogene 11 O - 20121230 -9606 343263 MYBPHL - - HGNC:30434|Ensembl:ENSG00000221986|HPRD:17616|Vega:OTTHUMG00000012002 1 1p13.3 myosin binding protein H-like protein-coding MYBPHL myosin binding protein H-like O myosin-binding protein H-like 20121230 -9606 343296 ADH5P2 - - HGNC:22976 1 1p31.1 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 2 pseudo ADH5P2 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 2 O - 20121230 -9606 343301 RPL10AP4 - RPL10A_1_67 HGNC:35873 1 1p31.1 ribosomal protein L10a pseudogene 4 pseudo RPL10AP4 ribosomal protein L10a pseudogene 4 O - 20121230 -9606 343326 KRT18P28 - - HGNC:33397 1 1q25.3 keratin 18 pseudogene 28 pseudo KRT18P28 keratin 18 pseudogene 28 O - 20121230 -9606 343332 FDPSP1 - CHR39A|FDPSL1|FPSL1 HGNC:3632 1 1q31 farnesyl diphosphate synthase pseudogene 1 pseudo FDPSP1 farnesyl diphosphate synthase pseudogene 1 O - 20121230 -9606 343338 GAPDHP20 - - HGNC:37772 1 1p35.1 glyceraldehyde 3 phosphate dehydrogenase pseudogene 20 pseudo GAPDHP20 glyceraldehyde 3 phosphate dehydrogenase pseudogene 20 O - 20121230 -9606 343381 NBPF2P - - HGNC:31987 1 1p36.12 neuroblastoma breakpoint family, member 2, pseudogene pseudo NBPF2P neuroblastoma breakpoint family, member 2, pseudogene O - 20121230 -9606 343406 OR10R2 - OR1-8|OR10R2Q HGNC:14820|Ensembl:ENSG00000198965|HPRD:17674|Vega:OTTHUMG00000019632 1 1q23.1 olfactory receptor, family 10, subfamily R, member 2 protein-coding OR10R2 olfactory receptor, family 10, subfamily R, member 2 O olfactory receptor 10R2|olfactory receptor OR1-8 20121230 -9606 343409 OR10J8P - - HGNC:19638 1 1q23.2 olfactory receptor, family 10, subfamily J, member 8 pseudogene pseudo OR10J8P olfactory receptor, family 10, subfamily J, member 8 pseudogene O - 20121230 -9606 343413 FCRL6 RP11-190A12.2 FcRH6 HGNC:31910|MIM:613562|Ensembl:ENSG00000181036|HPRD:14177|Vega:OTTHUMG00000035351 1 1q23.2 Fc receptor-like 6 protein-coding FCRL6 Fc receptor-like 6 O Fc receptor-like protein 6|Fc receptor-like protein 7|IFGP6|IgSF type I transmembrane receptor|fc receptor homolog 6|fcR-like protein 6|leukocyte receptor 20121230 -9606 343450 KCNT2 RP11-58O13.1 KCa4.2|SLICK|SLO2.1 HGNC:18866|MIM:610044|Ensembl:ENSG00000162687|HPRD:11584|Vega:OTTHUMG00000035611 1 1q31.3 potassium channel, subfamily T, member 2 protein-coding KCNT2 potassium channel, subfamily T, member 2 O potassium channel subfamily T member 2|sequence like an intermediate conductance potassium channel subunit|sodium activated potassium channel|sodium and chloride activated ATP sensitive potassium channel|sodium and chloride-activated ATP-sensitive potassium channel Slo2.1|sodium- and chloride-activated ATP-sensitive potassium channel|sodium-and chloride-activated ATP-sensitive potassium channel (SLICK) 20121230 -9606 343472 BARHL2 - - HGNC:954|MIM:605212|Ensembl:ENSG00000143032|HPRD:05555|Vega:OTTHUMG00000010020 1 1p22.2 BarH-like homeobox 2 protein-coding BARHL2 BarH-like homeobox 2 O barH-like 2 homeobox protein 20121230 -9606 343477 HSP90B3P - GRP94C|TRA1P2|TRAP2 HGNC:12100 1 1p22.1 heat shock protein 90kDa beta (Grp94), member 3, pseudogene pseudo HSP90B3P heat shock protein 90kDa beta (Grp94), member 3, pseudogene O - 20121230 -9606 343495 RPL6P2 - RPL6_1_93 HGNC:35964 1 1p12 ribosomal protein L6 pseudogene 2 pseudo RPL6P2 ribosomal protein L6 pseudogene 2 O - 20121230 -9606 343505 NBPF7 - - HGNC:31989|MIM:613997 1 1p12 neuroblastoma breakpoint family, member 7 protein-coding NBPF7 neuroblastoma breakpoint family, member 7 O putative neuroblastoma breakpoint family member 7 20121230 -9606 343508 LOC343508 - - - 1 1q42.3 aconitase 2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 343515 ATP6V1E1P1 - ATP6EP1|ATP6V1EP1 HGNC:859 1 1p34.2 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 1 pseudo ATP6V1E1P1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 1 O - 20121230 -9606 343521 TCTEX1D4 RP11-269F19.9 - HGNC:32315|MIM:611713|Ensembl:ENSG00000188396|HPRD:15762|Vega:OTTHUMG00000008586 1 1p34.1 Tctex1 domain containing 4 protein-coding TCTEX1D4 Tctex1 domain containing 4 O Tctex2 beta|novel Tctex-1 family domain-containing protein|protein N22.1|tctex-2-beta|tctex1 domain-containing protein 4 20121230 -9606 343563 OR2T29 - - HGNC:31253|Ensembl:ENSG00000182783|HPRD:17707|Vega:OTTHUMG00000040382 1 1q44 olfactory receptor, family 2, subfamily T, member 29 protein-coding OR2T29 olfactory receptor, family 2, subfamily T, member 29 O olfactory receptor 2T29 20121230 -9606 343578 ARHGAP40 RP5-1100H13.4 C20orf95|dJ1100H13.4 HGNC:16226|Ensembl:ENSG00000124143|Vega:OTTHUMG00000032453 20 20q11.23 Rho GTPase activating protein 40 protein-coding ARHGAP40 Rho GTPase activating protein 40 O rho GTPase-activating protein 40|rho-type GTPase-activating protein 40 20121230 -9606 343637 RSPO4 RP5-824F16.1 C20orf182|CRISTIN4 HGNC:16175|MIM:610573|Ensembl:ENSG00000101282|Vega:OTTHUMG00000031651 20 20p13 R-spondin 4 protein-coding RSPO4 R-spondin 4 O R-spondin family, member 4|R-spondin-4|hRspo4|roof plate-specific spondin-4 20121230 -9606 343641 TGM6 RP4-734P14.2 SCA35|TG6|TGM3L|TGY|dJ734P14.3 HGNC:16255|MIM:613900|Ensembl:ENSG00000166948|HPRD:15495|Vega:OTTHUMG00000031692 20 20p13 transglutaminase 6 protein-coding TGM6 transglutaminase 6 O TGase Y|TGase-6|protein-glutamine gamma-glutamyltransferase 6|transglutaminase y 20121230 -9606 343702 XKR7 RP1-310O13.11-001 C20orf159|dJ310O13.4 HGNC:23062|Ensembl:ENSG00000101321|HPRD:17359|Vega:OTTHUMG00000032198 20 20q11.21 XK, Kell blood group complex subunit-related family, member 7 protein-coding XKR7 XK, Kell blood group complex subunit-related family, member 7 O X Kell blood group precursor-related family, member 7|XK-related protein 7 20121230 -9606 343727 CYCSP42 - CYC1LP5|HCP42 HGNC:2581 21 21q21.1 cytochrome c, somatic pseudogene 42 pseudo CYCSP42 cytochrome c, somatic pseudogene 42 O - 20121230 -9606 343819 MRPL51P2 - - HGNC:29724 21 21q22.3 mitochondrial ribosomal protein L51 pseudogene 2 pseudo MRPL51P2 mitochondrial ribosomal protein L51 pseudogene 2 O - 20121230 -9606 343851 RPS10P30 - RPS10_14_1741 HGNC:35593 22 22q11.23 ribosomal protein S10 pseudogene 30 pseudo RPS10P30 ribosomal protein S10 pseudogene 30 O - 20121230 -9606 343901 MRPS18CP6 - - HGNC:29747 22 22q13.31 mitochondrial ribosomal protein S18C pseudogene 6 pseudo MRPS18CP6 mitochondrial ribosomal protein S18C pseudogene 6 O - 20121230 -9606 343930 MSGN1 hCG_1648308 MSOG HGNC:14907|MIM:612209|Ensembl:ENSG00000151379|Vega:OTTHUMG00000159089 2 2p24.2 mesogenin 1 protein-coding MSGN1 mesogenin 1 O mesogenin-1|pMesogenin1|pMsgn1|paraxial mesoderm-specific mesogenin1|paraxial mesogenin 20121230 -9606 343981 GLULP6 - - HGNC:37990 2 2q32.3 glutamate-ammonia ligase (glutamine synthetase) pseudogene 6 pseudo GLULP6 glutamate-ammonia ligase (glutamine synthetase) pseudogene 6 O - 20121230 -9606 343990 KIAA1211L - C2orf55 HGNC:33454|Ensembl:ENSG00000196872|HPRD:14620|Vega:OTTHUMG00000153171 2 2q11.2 KIAA1211-like protein-coding KIAA1211L KIAA1211-like O uncharacterized protein C2orf55|uncharacterized protein KIAA1211-like 20121230 -9606 344018 FIGLA - BHLHC8|FIGALPHA|POF6 HGNC:24669|MIM:608697|Ensembl:ENSG00000183733|HPRD:12279|Vega:OTTHUMG00000153440 2 2p13.3 folliculogenesis specific basic helix-loop-helix protein-coding FIGLA folliculogenesis specific basic helix-loop-helix O class C basic helix-loop-helix protein 8|factor in the germline alpha|folliculogenesis-specific basic helix-loop-helix protein|transcription factor FIGa 20121230 -9606 344022 NOTO - - HGNC:31839|Ensembl:ENSG00000214513|Vega:OTTHUMG00000164128 2 2p13.2 notochord homeobox protein-coding NOTO notochord homeobox O homeobox protein notochord|notochord homolog 20121230 -9606 344065 LOC344065 - - - 2 2q11.1 zinc finger protein 184 pseudogene pseudo - - - - 20121230 -9606 344148 NCKAP5 - ERIH1|ERIH2|NAP5 HGNC:29847|MIM:608789|Ensembl:ENSG00000176771|HPRD:16936|Vega:OTTHUMG00000153573 2 2q21.2 NCK-associated protein 5 protein-coding NCKAP5 NCK-associated protein 5 O NAP-5|Nck associated protein 5|nck-associated protein 5|peripheral clock protein 2 20121230 -9606 344167 FOXI3 - - HGNC:35123|MIM:612351 2 2p11.2 forkhead box I3 protein-coding FOXI3 forkhead box I3 O forkhead box protein I3 20121230 -9606 344178 RPL5P7 - RPL5_2_294 HGNC:36583 2 2q31.1 ribosomal protein L5 pseudogene 7 pseudo RPL5P7 ribosomal protein L5 pseudogene 7 O - 20121230 -9606 344191 EVX2 - EVX-2 HGNC:3507|MIM:142991|Ensembl:ENSG00000174279|Vega:OTTHUMG00000154173 2 2q31.1 even-skipped homeobox 2 protein-coding EVX2 even-skipped homeobox 2 O eve, even-skipped homeo box homolog 2|even-skipped homeo box 2 (homolog of Drosophila eve)|homeobox even-skipped homolog protein 2 20121230 -9606 344320 KRT8P10 - - HGNC:33364 2 2q32.1 keratin 8 pseudogene 10 pseudo KRT8P10 keratin 8 pseudogene 10 O - 20121230 -9606 344328 ST13P2 - - HGNC:38716 2 2q32.1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 2 pseudo ST13P2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 2 O - 20121230 -9606 344332 FABP5P10 - FABP5L10 HGNC:31066 2 2q23.3 fatty acid binding protein 5 pseudogene 10 pseudo FABP5P10 fatty acid binding protein 5 pseudogene 10 O - 20121230 -9606 344371 SLC25A5P2 - - HGNC:35470 2 2p22.3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 2 pseudo SLC25A5P2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 2 O - 20121230 -9606 344382 LOC344382 - - - 2 2p22.2 serine/threonine kinase receptor associated protein pseudogene pseudo - - - - 20121230 -9606 344387 CDKL4 - - HGNC:19287|Ensembl:ENSG00000205111|HPRD:16698|Vega:OTTHUMG00000133574 2 2p22.1 cyclin-dependent kinase-like 4 protein-coding CDKL4 cyclin-dependent kinase-like 4 O - 20121230 -9606 344405 PRORSD1P - NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 HGNC:34379 2 2p16.1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo PRORSD1P prolyl-tRNA synthetase associated domain containing 1, pseudogene O - 20121230 -9606 344423 RPS12P3 - RPS12_2_223 HGNC:35500 2 2p16.1 ribosomal protein S12 pseudogene 3 pseudo RPS12P3 ribosomal protein S12 pseudogene 3 O - 20121230 -9606 344454 AOX2P - AOH2|AOX2 HGNC:18450 2 2q33.1 aldehyde oxidase 2 pseudogene pseudo AOX2P aldehyde oxidase 2 pseudogene O - 20121230 -9606 344462 KRT18P39 - - HGNC:33408 2 2q33.2 keratin 18 pseudogene 39 pseudo KRT18P39 keratin 18 pseudogene 39 O - 20121230 -9606 344471 RPL12P17 - RPL12_2_319 HGNC:36263 2 2q33.3 ribosomal protein L12 pseudogene 17 pseudo RPL12P17 ribosomal protein L12 pseudogene 17 O - 20121230 -9606 344558 SH3RF3 - POSH2|SH3MD4 HGNC:24699|Ensembl:ENSG00000172985|Vega:OTTHUMG00000153439 2 2q13 SH3 domain containing ring finger 3 protein-coding SH3RF3 SH3 domain containing ring finger 3 O SH3 domain-containing RING finger protein 3|SH3 multiple domains 4|SH3 multiple domains protein 4|plenty of SH3s 2|plenty of SH3s-2 20121230 -9606 344561 GPR148 - BTR|PGR6 HGNC:23623|Ensembl:ENSG00000173302|HPRD:13598|Vega:OTTHUMG00000131655 2 2q21.1 G protein-coupled receptor 148 protein-coding GPR148 G protein-coupled receptor 148 O G protein-coupled receptor PGR6|G-protein coupled receptor PGR6|brain and testis restricted GPCR|probable G-protein coupled receptor 148 20121230 -9606 344593 LOC344593 - - - 3 3q13.12 protein tyrosine phosphatase, non-receptor type 11 pseudogene pseudo - - - - 20121230 -9606 344595 LOC344595 - - - 3 3q13.12 uncharacterized LOC344595 miscRNA - - - - 20121230 -9606 344653 LOC344653 - - - 3 3p11.1 ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene pseudo - - - - 20121230 -9606 344657 LRRIQ4 - LRRC64 HGNC:34298|Ensembl:ENSG00000188306|Vega:OTTHUMG00000164420 3 3q26.2 leucine-rich repeats and IQ motif containing 4 protein-coding LRRIQ4 leucine-rich repeats and IQ motif containing 4 O leucine rich repeat containing 64|leucine-rich repeat and IQ domain-containing protein 4|leucine-rich repeat-containing protein 64 20121230 -9606 344658 SAMD7 - - HGNC:25394|Ensembl:ENSG00000187033|HPRD:18013|Vega:OTTHUMG00000158730 3 3q26.2 sterile alpha motif domain containing 7 protein-coding SAMD7 sterile alpha motif domain containing 7 O SAM domain-containing protein 7|sterile alpha motif domain-containing protein 7 20121230 -9606 344697 HNRNPA1P21 - HNRNPA1P HGNC:39539 3 3p22.2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 21 pseudo HNRNPA1P21 heterogeneous nuclear ribonucleoprotein A1 pseudogene 21 O - 20121230 -9606 344709 CCDC75P1 - - HGNC:42659 3 3p13 coiled-coil domain containing 75 pseudogene 1 pseudo CCDC75P1 coiled-coil domain containing 75 pseudogene 1 O - 20121230 -9606 344729 OR7E140P - - HGNC:19561 12 12p13.31 olfactory receptor, family 7, subfamily E, member 140 pseudogene pseudo OR7E140P olfactory receptor, family 7, subfamily E, member 140 pseudogene O - 20121230 -9606 344741 HNRNPA1P20 - - HGNC:39538 3 3q24 heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 pseudo HNRNPA1P20 heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 O - 20121230 -9606 344752 AADACL2 - - HGNC:24427|Ensembl:ENSG00000197953|HPRD:14705|Vega:OTTHUMG00000155914 3 3q25.1 arylacetamide deacetylase-like 2 protein-coding AADACL2 arylacetamide deacetylase-like 2 O - 20121230 -9606 344758 GPR149 - IEDA|PGR10 HGNC:23627|Ensembl:ENSG00000174948|Vega:OTTHUMG00000159131 3 3q25.2 G protein-coupled receptor 149 protein-coding GPR149 G protein-coupled receptor 149 O G protein-coupled receptor PGR10|G-protein coupled receptor PGR10|probable G-protein coupled receptor 149 20121230 -9606 344760 VN2R1P - CASRL1|GPRC2B HGNC:30344 3 3q25.31 vomeronasal 2 receptor 1 pseudogene pseudo VN2R1P vomeronasal 2 receptor 1 pseudogene O - 20121230 -9606 344787 ZNF860 - - HGNC:34513|Ensembl:ENSG00000197385|Vega:OTTHUMG00000155838 3 3p23 zinc finger protein 860 protein-coding ZNF860 zinc finger protein 860 O - 20121230 -9606 344805 TMPRSS7 - - HGNC:30846|Ensembl:ENSG00000176040|Vega:OTTHUMG00000157148 3 3q13.2 transmembrane protease, serine 7 protein-coding TMPRSS7 transmembrane protease, serine 7 O matriptase-3|transmembrane protease serine 7|transmembrane serine protease 7|type II transmembrane serine protease 7 20121230 -9606 344807 CD200R1L - CD200R2|CD200RLa HGNC:24665|Ensembl:ENSG00000206531|HPRD:16691|Vega:OTTHUMG00000159283 3 3q13.2 CD200 receptor 1-like protein-coding CD200R1L CD200 receptor 1-like O CD200 cell surface glycoprotein receptor 2|CD200 cell surface glycoprotein receptor-like 2|CD200 cell surface glycoprotein receptor-like a|CD200 receptor 2|CD200 receptor-like 2|cell surface glycoprotein CD200 receptor 1-like|cell surface glycoprotein CD200 receptor 2|cell surface glycoprotein OX2 receptor 2|huCD200R2 20121230 -9606 344813 GSTO3P - GSTO3P1 HGNC:23065 3 3q22.1 glutathione S-transferase omega 3, pseudogene pseudo GSTO3P glutathione S-transferase omega 3, pseudogene O - 20121230 -9606 344838 PAQR9 - - HGNC:30131|MIM:614580|Ensembl:ENSG00000188582|HPRD:17821|Vega:OTTHUMG00000159313 3 3q23 progestin and adipoQ receptor family member IX protein-coding PAQR9 progestin and adipoQ receptor family member IX O progestin and adipoQ receptor family member 9 20121230 -9606 344866 KRT18P17 - - HGNC:33385 3 3p25.2 keratin 18 pseudogene 17 pseudo KRT18P17 keratin 18 pseudogene 17 O - 20121230 -9606 344875 COL6A4P1 - COL6A4|COL6A4P|DIVA|DVWA|VWA6 HGNC:33484|MIM:612397 3 3p25.1 collagen, type VI, alpha 4 pseudogene 1 pseudo COL6A4P1 collagen, type VI, alpha 4 pseudogene 1 O - 20121230 -9606 344887 LOC344887 - - - 3 3q27.2 NmrA-like family domain containing 1 pseudogene pseudo - - - - 20121230 -9606 344892 RTP2 - - HGNC:32486|MIM:609138|Ensembl:ENSG00000198471|HPRD:12371|Vega:OTTHUMG00000156458 3 3q27.3 receptor (chemosensory) transporter protein 2 protein-coding RTP2 receptor (chemosensory) transporter protein 2 O receptor transporter protein 2|receptor transporting protein 2|receptor-transporting protein 2 20121230 -9606 344901 OSTN - MUSCLIN HGNC:29961|MIM:610280|Ensembl:ENSG00000188729|HPRD:17809|Vega:OTTHUMG00000156190 3 3q28 osteocrin protein-coding OSTN osteocrin O - 20121230 -9606 344905 ATP13A5 UNQ488/PRO1004 - HGNC:31789|Ensembl:ENSG00000187527|HPRD:18597|Vega:OTTHUMG00000156101 3 3q29 ATPase type 13A5 protein-coding ATP13A5 ATPase type 13A5 O P5-ATPase|probable cation-transporting ATPase 13A5 20121230 -9606 344967 LOC344967 - - MIM:611963 4 4p14 acyl-CoA thioesterase 7 pseudogene pseudo - - - - 20121230 -9606 344978 ACTN4P1 - - HGNC:44028 4 4q26 actinin, alpha 4 pseudogene 1 pseudo ACTN4P1 actinin, alpha 4 pseudogene 1 O - 20121230 -9606 344988 SAR1AP3 - SAR1P3 HGNC:32317 4 4q27 SAR1 homolog A (S. cerevisiae) pseudogene 3 pseudo SAR1AP3 SAR1 homolog A (S. cerevisiae) pseudogene 3 O - 20121230 -9606 345016 PES1P1 - - HGNC:44058 4 4q28.3 pescadillo ribosomal biogenesis factor 1 pseudogene 1 pseudo PES1P1 pescadillo ribosomal biogenesis factor 1 pseudogene 1 O - 20121230 -9606 345041 HSPD1P5 - HSPD1-8P|HSPDP5 HGNC:5266 4 4q31.21 heat shock 60kDa protein 1 (chaperonin) pseudogene 5 pseudo HSPD1P5 heat shock 60kDa protein 1 (chaperonin) pseudogene 5 O - 20121230 -9606 345051 LOC345051 hCG_38984 - - 4 4q31.22 hCG38984 unknown - - - - 20121230 -9606 345062 PRSS48 - ESSPL HGNC:24635|Ensembl:ENSG00000189099|HPRD:07110|Vega:OTTHUMG00000161673 4 4q31.3 protease, serine, 48 protein-coding PRSS48 protease, serine, 48 O epidermis-specific serine protease-like protein|serine protease 48 20121230 -9606 345079 SOWAHB - ANKRD56 HGNC:32958|Ensembl:ENSG00000186212|HPRD:18789|Vega:OTTHUMG00000160876 4 4q21.1 sosondowah ankyrin repeat domain family member B protein-coding SOWAHB sosondowah ankyrin repeat domain family member B O ankyrin repeat domain 56|ankyrin repeat domain-containing protein 56|ankyrin repeat domain-containing protein SOWAHB|protein sosondowah homolog B 20121230 -9606 345193 LRIT3 - FIGLER4 HGNC:24783|Ensembl:ENSG00000183423|HPRD:13495|Vega:OTTHUMG00000132043 4 4q25 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 protein-coding LRIT3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 O fibronectin type III, immunoglobulin and leucine rich repeat domains 4|leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3 20121230 -9606 345222 MSANTD1 - C4orf44 HGNC:33741|Ensembl:ENSG00000188981|HPRD:16084|Vega:OTTHUMG00000159977 4 4p16.3 Myb/SANT-like DNA-binding domain containing 1 protein-coding MSANTD1 Myb/SANT-like DNA-binding domain containing 1 O myb/SANT-like DNA-binding domain-containing protein 1 20121230 -9606 345258 BIN2P1 - - HGNC:43660 4 4q21.22 bridging integrator 2 pseudogene 1 pseudo BIN2P1 bridging integrator 2 pseudogene 1 O - 20121230 -9606 345274 SLC10A6 - SOAT HGNC:30603|MIM:613366|Ensembl:ENSG00000145283|HPRD:11593|Vega:OTTHUMG00000130596 4 4q21.3 solute carrier family 10 (sodium/bile acid cotransporter family), member 6 protein-coding SLC10A6 solute carrier family 10 (sodium/bile acid cotransporter family), member 6 O sodium-dependent organic anion transporter|solute carrier family 10 member 6 20121230 -9606 345275 HSD17B13 HMFN0376 NIIL497|SCDR9|SDR16C3 HGNC:18685|MIM:612127|Ensembl:ENSG00000170509|HPRD:18023|Vega:OTTHUMG00000130602 4 4q22.1 hydroxysteroid (17-beta) dehydrogenase 13 protein-coding HSD17B13 hydroxysteroid (17-beta) dehydrogenase 13 O 17-beta hydroxysteroid dehydrogenase|17-beta-HSD 13|17-beta-hydroxysteroid dehydrogenase 13|short chain dehydrogenase/reductase family 16C, member 3|short-chain dehydrogenase/reductase 9 20121230 -9606 345430 KRT18P41 - - HGNC:33411 5 5q35.1 keratin 18 pseudogene 41 pseudo KRT18P41 keratin 18 pseudogene 41 O - 20121230 -9606 345456 PFN3 - - HGNC:18627|MIM:612812|Ensembl:ENSG00000196570|Vega:OTTHUMG00000163408 5 5q35.3 profilin 3 protein-coding PFN3 profilin 3 O profilin III|profilin-3 20121230 -9606 345462 ZNF879 - DKFZp686E2433 HGNC:37273|Ensembl:ENSG00000234284|Vega:OTTHUMG00000163596 5 5q35.3 zinc finger protein 879 protein-coding ZNF879 zinc finger protein 879 O - 20121230 -9606 345471 LOC345471 - - - 5 5q33.3 cell division cycle 37 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 345557 PLCXD3 - - HGNC:31822|Ensembl:ENSG00000182836|HPRD:17860|Vega:OTTHUMG00000162076 5 5p13.1 phosphatidylinositol-specific phospholipase C, X domain containing 3 protein-coding PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 O PI-PLC X domain-containing protein 3 20121230 -9606 345571 LOC345571 - - - 5 5q21.3 RUN and FYVE domain containing 3 pseudogene pseudo - - - - 20121230 -9606 345576 LOC345576 - - - 5 5q21.3 ubiquitin specific peptidase 7 (herpes virus-associated) pseudogene pseudo - - - - 20121230 -9606 345611 IRGM - IFI1|IRGM1|LRG-47|LRG47 HGNC:29597|MIM:608212|Ensembl:ENSG00000237693|Vega:OTTHUMG00000163647 5 5q33.1 immunity-related GTPase family, M protein-coding IRGM immunity-related GTPase family, M O LPS-stimulated RAW 264.7 macrophage protein 47 homolog|LRG-47-like protein|immunity-related GTPase family M protein|immunity-related GTPase family, M1|interferon-inducible protein 1 20121230 -9606 345630 FBLL1 - - HGNC:35458 5 5q34 fibrillarin-like 1 pseudo FBLL1 fibrillarin-like 1 O - 20121230 -9606 345643 MCIN - IDAS|MCI HGNC:40050|MIM:614086|Ensembl:ENSG00000234602|Vega:OTTHUMG00000162600 5 5q11.2 multiciliate cell differentiation 1 protein-coding MCIN multiciliate cell differentiation 1 O multicilin|protein Idas 20121230 -9606 345645 PSMC1P4 - - HGNC:39779 5 5q11.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 4 pseudo PSMC1P4 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 4 O - 20121230 -9606 345651 ACTBL2 - ACT HGNC:17780|MIM:614835|Ensembl:ENSG00000169067|HPRD:18598|Vega:OTTHUMG00000162330 5 5q11.2 actin, beta-like 2 protein-coding ACTBL2 actin, beta-like 2 O actin-like protein|beta-actin-like protein 2|kappa-actin 20121230 -9606 345757 FAM174A UNQ1912/PRO4371 TMEM157|UNQ1912 HGNC:24943|Ensembl:ENSG00000174132|HPRD:18260|Vega:OTTHUMG00000128726 5 5q21.1 family with sequence similarity 174, member A protein-coding FAM174A family with sequence similarity 174, member A O HCV NS5A-transactivated protein 6|HGS_RE408|hepatitis C virus NS5A-transactivated protein 6|membrane protein FAM174A|transmembrane protein 157 20121230 -9606 345778 MTX3 - - HGNC:24812|Ensembl:ENSG00000177034|HPRD:17614|Vega:OTTHUMG00000162547 5 5q14.1 metaxin 3 protein-coding MTX3 metaxin 3 O metaxin-3 20121230 -9606 345829 BTF3P10 - RAET1J HGNC:38570 6 6q25.1 basic transcription factor 3 pseudogene 10 pseudo BTF3P10 basic transcription factor 3 pseudogene 10 O - 20121230 -9606 345895 RSPH4A - CILD11|RSHL3|RSPH6B|dJ412I7.1 HGNC:21558|MIM:612647|Ensembl:ENSG00000111834|HPRD:18005|Vega:OTTHUMG00000015444 6 6q22.1 radial spoke head 4 homolog A (Chlamydomonas) protein-coding RSPH4A radial spoke head 4 homolog A (Chlamydomonas) O radial spoke head protein 4 homolog A|radial spoke head-like protein 3|radial spokehead-like 3 20121230 -9606 345930 ECT2L RP3-509I19.3 ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 HGNC:21118|Ensembl:ENSG00000203734|Vega:OTTHUMG00000015679 6 6q24.1 epithelial cell transforming sequence 2 oncogene-like protein-coding ECT2L epithelial cell transforming sequence 2 oncogene-like O ECT2-like|F-box protein 49|epithelial cell-transforming sequence 2 oncogene-like|lung specific F-box and DH domain containing protein|lung-specific F-box and DH domain-containing protein|putative guanine nucleotide exchange factor LFDH 20121230 -9606 346007 EYS RP1-22I17.2 C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 HGNC:21555|MIM:612424|Ensembl:ENSG00000188107|HPRD:16853|Vega:OTTHUMG00000014971 6 6q12 eyes shut homolog (Drosophila) protein-coding EYS eyes shut homolog (Drosophila) O EGF-like-domain, multiple 10|EGF-like-domain, multiple 11|epidermal growth factor-like protein 10|epidermal growth factor-like protein 11|protein eyes shut homolog|protein spacemaker homolog 20121230 -9606 346085 GAPDHP72 - GAPDHL18|GAPDL18 HGNC:22955 6 6q27 glyceraldehyde-3-phosphate dehydrogenase pseudogene 72 pseudo GAPDHP72 glyceraldehyde-3-phosphate dehydrogenase pseudogene 72 O - 20121230 -9606 346116 MRPL42P2 - - HGNC:29711 6 6p22.3 mitochondrial ribosomal protein L42 pseudogene 2 pseudo MRPL42P2 mitochondrial ribosomal protein L42 pseudogene 2 O - 20121230 -9606 346157 ZNF391 RP1-153G14.3 dJ153G14.3 HGNC:18779|Ensembl:ENSG00000124613|HPRD:18461|Vega:OTTHUMG00000014477 6 6p22.1 zinc finger protein 391 protein-coding ZNF391 zinc finger protein 391 O - 20121230 -9606 346171 ZFP57 DADB-25P22.4 C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2 HGNC:18791|MIM:612192|Ensembl:ENSG00000204644|Vega:OTTHUMG00000031158 6 6p22.1 ZFP57 zinc finger protein protein-coding ZFP57 ZFP57 zinc finger protein O zfp-57|zinc finger protein 57 homolog|zinc finger protein 698 20121230 -9606 346288 SEPT14 - - HGNC:33280|MIM:612140|Ensembl:ENSG00000154997|HPRD:16972|Vega:OTTHUMG00000129341 7 7p11.2 septin 14 protein-coding SEPT14 septin 14 O septin-14 20121230 -9606 346296 LOC346296 - - - 7 7p11.2 insulin-like growth factor 2 mRNA binding protein 3 pseudogene pseudo - - - - 20121230 -9606 346329 LOC346329 - - - 7 7q11.21 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) pseudogene pseudo - - - - 20121230 -9606 346389 MACC1 - 7A5|SH3BP4L HGNC:30215|MIM:612646|Ensembl:ENSG00000183742|HPRD:12381|Vega:OTTHUMG00000128415 7 7p21.1 metastasis associated in colon cancer 1 protein-coding MACC1 metastasis associated in colon cancer 1 O SH3 domain-containing protein 7a5|metastasis-associated in colon cancer protein 1|putative binding protein 7a5 20121230 -9606 346470 MRPL42P4 - - HGNC:29713 7 7p12.3 mitochondrial ribosomal protein L42 pseudogene 4 pseudo MRPL42P4 mitochondrial ribosomal protein L42 pseudogene 4 O - 20121230 -9606 346517 OR6V1 - GPR138 HGNC:15090|Ensembl:ENSG00000225781|HPRD:11417|Vega:OTTHUMG00000158385 7 7q34 olfactory receptor, family 6, subfamily V, member 1 protein-coding OR6V1 olfactory receptor, family 6, subfamily V, member 1 O olfactory receptor 6V1|olfactory receptor OR7-3 20121230 -9606 346524 OR2Q1P - OR7-2 HGNC:8273 7 7q35 olfactory receptor, family 2, subfamily Q, member 1 pseudogene pseudo OR2Q1P olfactory receptor, family 2, subfamily Q, member 1 pseudogene O - 20121230 -9606 346525 OR2A12 - OR2A12P|OR2A16P HGNC:15082|Ensembl:ENSG00000221858|HPRD:14929|Vega:OTTHUMG00000157996 7 7q35 olfactory receptor, family 2, subfamily A, member 12 protein-coding OR2A12 olfactory receptor, family 2, subfamily A, member 12 O olfactory receptor 2A12|olfactory receptor OR7-10|olfactory receptor, family 2, subfamily A, member 12 pseudogene|olfactory receptor, family 2, subfamily A, member 16 pseudogene 20121230 -9606 346528 OR2A1 - - HGNC:8229|Ensembl:ENSG00000221970|HPRD:14928|Vega:OTTHUMG00000158005 7 7q35 olfactory receptor, family 2, subfamily A, member 1 protein-coding OR2A1 olfactory receptor, family 2, subfamily A, member 1 O olfactory receptor 2A1/2A42|olfactory receptor OR7-16|olfactory receptor OR7-19 20121230 -9606 346547 ERVFC1-1 - envF(c)2 HGNC:38137|HPRD:16961 7 7q36.2 endogenous retrovirus group FC1, member 1 unknown ERVFC1-1 endogenous retrovirus group FC1, member 1 O - 20120710 -9606 346562 GNAT3 tcag7.1053 GDCA HGNC:22800|MIM:139395|Ensembl:ENSG00000214415|Vega:OTTHUMG00000155401 7 7q21.11 guanine nucleotide binding protein, alpha transducing 3 protein-coding GNAT3 guanine nucleotide binding protein, alpha transducing 3 O guanine nucleotide-binding protein G(t) subunit alpha-3|gustducin alpha-3 chain 20121230 -9606 346606 MOGAT3 UNQ9383/PRO34208 DC7|DGAT2L7|MGAT3 HGNC:23249|MIM:610184|Ensembl:ENSG00000106384|HPRD:11368|Vega:OTTHUMG00000023328 7 7q22.1 monoacylglycerol O-acyltransferase 3 protein-coding MOGAT3 monoacylglycerol O-acyltransferase 3 O 2-acylglycerol O-acyltransferase 3|acyl coenzyme A:monoacylglycerol acyltransferase 3|acyl-CoA:monoacylglycerol acyltransferase 3|diacylglycerol O-acyltransferase candidate 7|diacylglycerol acyltransferase 2-like protein 7|hDC7 20121230 -9606 346653 FAM71F2 tcag7.1070 FAM137B HGNC:27998|Ensembl:ENSG00000205085|HPRD:17840|Vega:OTTHUMG00000158275 7 7q32.1 family with sequence similarity 71, member F2 protein-coding FAM71F2 family with sequence similarity 71, member F2 O family with sequence similarity 137, member B|protein FAM71F2 20121230 -9606 346671 LOC346671 - - - 7 7q33 ring finger protein 14 pseudogene pseudo - - - - 20101019 -9606 346673 STRA8 - - HGNC:30653|MIM:609987|Ensembl:ENSG00000146857|HPRD:18123|Vega:OTTHUMG00000155415 7 7q33 stimulated by retinoic acid 8 protein-coding STRA8 stimulated by retinoic acid 8 O stimulated by retinoic acid 8 homolog|stimulated by retinoic acid gene 8 homolog|stimulated by retinoic acid gene 8 protein homolog 20121230 -9606 346689 KLRG2 - CLEC15B HGNC:24778|Ensembl:ENSG00000188883|HPRD:13485|Vega:OTTHUMG00000157705 7 7q34 killer cell lectin-like receptor subfamily G, member 2 protein-coding KLRG2 killer cell lectin-like receptor subfamily G, member 2 O C-type lectin domain family 15 member B|C-type lectin domain family 15, member B|killer cell lectin-like receptor subfamily G member 2 20121230 -9606 346702 PRSS51 - - HGNC:37321 8 8p23.1 protease, serine, 51 protein-coding PRSS51 protease, serine, 51 O - 20120901 -9606 346708 OR7E8P - OR11-11a HGNC:8458 8 8p23.1 olfactory receptor, family 7, subfamily E, member 8 pseudogene pseudo OR7E8P olfactory receptor, family 7, subfamily E, member 8 pseudogene O similar to seven transmembrane helix receptor 20121230 -9606 346711 MRPL49P2 - - HGNC:29718 8 8p22 mitochondrial ribosomal protein L49 pseudogene 2 pseudo MRPL49P2 mitochondrial ribosomal protein L49 pseudogene 2 O - 20121230 -9606 346950 RPL37P6 - RPL37_5_905 HGNC:31080 8 8q12.1 ribosomal protein L37 pseudogene 6 pseudo RPL37P6 ribosomal protein L37 pseudogene 6 O - 20121230 -9606 346990 H2AFZP2 - - HGNC:32279 8 8q13.3 H2A histone family, member Z pseudogene 2 pseudo H2AFZP2 H2A histone family, member Z pseudogene 2 O - 20121230 -9606 347028 AFG3L2P1 - AFG3L2P HGNC:24169 8 8p11.1 AFG3 ATPase family member 3-like 2 (S. cerevisiae) pseudogene 1 pseudo AFG3L2P1 AFG3 ATPase family member 3-like 2 (S. cerevisiae) pseudogene 1 O - 20121230 -9606 347051 SLC10A5 - P5 HGNC:22981|Ensembl:ENSG00000253598|HPRD:18053|Vega:OTTHUMG00000164683 8 8q21.13 solute carrier family 10 (sodium/bile acid cotransporter family), member 5 protein-coding SLC10A5 solute carrier family 10 (sodium/bile acid cotransporter family), member 5 O Na(+)/bile acid cotransporter 5|sodium/bile acid cotransporter 5|solute carrier family 10 member 5 20121230 -9606 347088 GPR144 RP11-101K10.9 PGR24 HGNC:18651|Ensembl:ENSG00000180264|HPRD:17063|Vega:OTTHUMG00000020652 9 9q33.3 G protein-coupled receptor 144 protein-coding GPR144 G protein-coupled receptor 144 O G protein-coupled receptor PGR24|G-protein coupled receptor GPR144|G-protein coupled receptor PGR24|probable G-protein coupled receptor 144 20121230 -9606 347097 LOC347097 - - - 9 9q21.11 dermatan sulfate epimerase pseudogene pseudo - - - - 20121230 -9606 347127 SPATA31D5P - FAM75D5|FAM75D5P HGNC:38602 9 9q21.32 SPATA31 subfamily D, member 5, pseudogene pseudo SPATA31D5P SPATA31 subfamily D, member 5, pseudogene O - 20121230 -9606 347148 QRFP RP11-618A20.5 26RFa|P518 HGNC:29982|MIM:609795|Ensembl:ENSG00000188710|HPRD:17813|Vega:OTTHUMG00000131663 9 9q34.12 pyroglutamylated RFamide peptide protein-coding QRFP pyroglutamylated RFamide peptide O P518 precursor protein|RF(Arg-Phe)amide family 26 amino acid peptide (P518)|orexigenic neuropeptide QRFP 20121230 -9606 347168 OR1J1 RP11-542K23.1 OR9-18|hg32 HGNC:8208|Ensembl:ENSG00000136834|HPRD:14916|Vega:OTTHUMG00000020603 9 9q33.2 olfactory receptor, family 1, subfamily J, member 1 protein-coding OR1J1 olfactory receptor, family 1, subfamily J, member 1 O olfactory receptor 1J1|olfactory receptor OR9-18 20121230 -9606 347169 OR1B1 - OR9-26|OR9-B HGNC:8181|Ensembl:ENSG00000171484|HPRD:14913|Vega:OTTHUMG00000020616 9 9q33.2 olfactory receptor, family 1, subfamily B, member 1 protein-coding OR1B1 olfactory receptor, family 1, subfamily B, member 1 O olfactory receptor 1B1|olfactory receptor 9-B|olfactory receptor OR9-26 20121230 -9606 347193 PES1P2 - - HGNC:44059 9 9p23 pescadillo ribosomal biogenesis factor 1 pseudogene 2 pseudo PES1P2 pescadillo ribosomal biogenesis factor 1 pseudogene 2 O - 20121230 -9606 347240 KIF24 RP11-571F15.7 C9orf48|bA571F15.4 HGNC:19916|MIM:613747|Ensembl:ENSG00000186638|HPRD:12963|Vega:OTTHUMG00000019810 9 9p13.3 kinesin family member 24 protein-coding KIF24 kinesin family member 24 O kinesin-like protein KIF24 20121230 -9606 347252 IGFBPL1 - IGFBP-RP4|IGFBPRP4|bA113O24.1 HGNC:20081|MIM:610413|Ensembl:ENSG00000137142|HPRD:17138|Vega:OTTHUMG00000019937 9 9p13.1 insulin-like growth factor binding protein-like 1 protein-coding IGFBPL1 insulin-like growth factor binding protein-like 1 O IGFBP-related protein 10|insulin-like growth factor binding protein related protein 4|insulin-like growth factor-binding protein-like 1|insulin-like growth factor-binding-related protein 4 20121230 -9606 347265 KRT8P11 RP11-13B9.3 KRT8L1 HGNC:31058 9 9q22.33 keratin 8 pseudogene 11 pseudo KRT8P11 keratin 8 pseudogene 11 O - 20121230 -9606 347273 MURC - CAVIN4|cavin-4 HGNC:33742|Ensembl:ENSG00000170681|HPRD:18599|Vega:OTTHUMG00000020368 9 9q31.1 muscle-related coiled-coil protein protein-coding MURC muscle-related coiled-coil protein O muscle-restricted coiled-coil protein 20121230 -9606 347275 BAATP1 - ACNATP HGNC:34504 9 9q31.1 bile acid CoA: amino acid N-acyltransferase pseudogene 1 pseudo BAATP1 bile acid CoA: amino acid N-acyltransferase pseudogene 1 O - 20121230 -9606 347281 LOC347281 - - - 9 9q31.1 topoisomerase I binding, arginine/serine-rich pseudogene pseudo - - - - 20121230 -9606 347292 RPL36P14 - RPL36_5_1005 HGNC:35734 9 9q31.3 ribosomal protein L36 pseudogene 14 pseudo RPL36P14 ribosomal protein L36 pseudogene 14 O - 20121230 -9606 347333 KRT8P14 - - HGNC:33366 X Xp11.3 keratin 8 pseudogene 14 pseudo KRT8P14 keratin 8 pseudogene 14 O - 20121230 -9606 347344 ZNF81 RP1-54B20.8 HFZ20|MRX45|dJ54B20.6 HGNC:13156|MIM:314998|Ensembl:ENSG00000197779|Vega:OTTHUMG00000021462 X Xp11.23 zinc finger protein 81 protein-coding ZNF81 zinc finger protein 81 O - 20121230 -9606 347359 BMP2KL RP3-368A4.2 - HGNC:17080 X Xq13.2 BMP2 inducible kinase-like pseudo BMP2KL BMP2 inducible kinase-like O - 20121230 -9606 347363 KIF4CP - KIF4P1 HGNC:13340 X Xq21.1 kinesin family member 4C pseudogene pseudo KIF4CP kinesin family member 4C pseudogene O - 20121230 -9606 347365 ITIH6 RP1-159A15.1 ITIH5L|UNQ6369|dJ14O9.1 HGNC:28907|Ensembl:ENSG00000102313|HPRD:17164|Vega:OTTHUMG00000021634 X Xp11.22-p11.21 inter-alpha-trypsin inhibitor heavy chain family, member 6 protein-coding ITIH6 inter-alpha-trypsin inhibitor heavy chain family, member 6 O ITI-like protein|inter-alpha inhibitor H5-like protein|inter-alpha-trypsin inhibitor heavy chain H5-like protein|inter-alpha-trypsin inhibitor heavy chain H6 20121230 -9606 347376 H3F3AP5 hCG_1749005 p55 HGNC:42981 X Xp11.22 H3 histone, family 3A, pseudogene 5 pseudo H3F3AP5 H3 histone, family 3A, pseudogene 5 O - 20121230 -9606 347381 LOC347381 - - - X Xp22.32 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit pseudogene pseudo - - - - 20121230 -9606 347402 NLRP3P - NOD13 HGNC:29886 X Xq22.3 NLR family, pyrin domain containing 3 pseudogene pseudo NLRP3P NLR family, pyrin domain containing 3 pseudogene O - 20121230 -9606 347404 LANCL3 - - HGNC:24767|Ensembl:ENSG00000147036|HPRD:13957|Vega:OTTHUMG00000033177 X Xp21.1 LanC lantibiotic synthetase component C-like 3 (bacterial) protein-coding LANCL3 LanC lantibiotic synthetase component C-like 3 (bacterial) O lanC-like protein 3 20121230 -9606 347411 MPC1L - - HGNC:44205 X Xp11.4 mitochondrial pyruvate carrier 1-like protein-coding MPC1L mitochondrial pyruvate carrier 1-like O brain protein 44-like protein 2|mitochondrial pyruvate carrier 1-like protein 20121230 -9606 347422 LOC347422 - - - X Xq27.3 tRNA methyltransferase 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 347442 DCAF8L2 - WDR42C HGNC:31811 X Xp21.3 DDB1 and CUL4 associated factor 8-like 2 protein-coding DCAF8L2 DDB1 and CUL4 associated factor 8-like 2 O DDB1- and CUL4-associated factor 8-like protein 2|WD repeat domain 42C|WD repeat-containing protein 42C 20121230 -9606 347454 SOWAHD - ANKRD58 HGNC:32960|Ensembl:ENSG00000187808|Vega:OTTHUMG00000159606 X Xq24 sosondowah ankyrin repeat domain family member D protein-coding SOWAHD sosondowah ankyrin repeat domain family member D O ankyrin repeat domain 58|ankyrin repeat domain-containing protein 58|ankyrin repeat domain-containing protein SOWAHD|protein sosondowah homolog D 20121230 -9606 347468 OR13H1 - ORX1 HGNC:14755|Ensembl:ENSG00000171054|HPRD:18600|Vega:OTTHUMG00000022411 X Xq26.2 olfactory receptor, family 13, subfamily H, member 1 protein-coding OR13H1 olfactory receptor, family 13, subfamily H, member 1 O olfactory receptor 13H1|olfactory receptor ORX-1|olfactory receptor ORX1 20121230 -9606 347475 CCDC160 - - HGNC:37286|Ensembl:ENSG00000203952 X Xq26.2 coiled-coil domain containing 160 protein-coding CCDC160 coiled-coil domain containing 160 O UPF0625 coiled-coil domain-containing protein ENSP00000359845|coiled-coil domain-containing protein 160 20121230 -9606 347487 CXorf66 RP11-35F15.2 - HGNC:33743|Ensembl:ENSG00000203933|HPRD:18139|Vega:OTTHUMG00000022539 X Xq27.1 chromosome X open reading frame 66 protein-coding CXorf66 chromosome X open reading frame 66 O RP11-35F15.2|uncharacterized protein CXorf66 20121230 -9606 347509 RPL7L1P11 - - HGNC:39493 X Xq28 ribosomal protein L7-like 1 pseudogene 11 pseudo RPL7L1P11 ribosomal protein L7-like 1 pseudogene 11 O - 20121230 -9606 347516 DGAT2L6 RP13-26D14.8 DC3 HGNC:23250|Ensembl:ENSG00000184210|HPRD:13141|Vega:OTTHUMG00000021774 X Xq13.1 diacylglycerol O-acyltransferase 2-like 6 protein-coding DGAT2L6 diacylglycerol O-acyltransferase 2-like 6 O diacylglycerol O-acyltransferase 2 like 6|diacylglycerol O-acyltransferase 2-like protein 6|diacylglycerol O-acyltransferase candidate 3|hDC3 20121230 -9606 347517 RAB41 RP13-26D14.4 - HGNC:18293|Ensembl:ENSG00000147127|Vega:OTTHUMG00000021772 X Xq13.1 RAB41, member RAS oncogene family protein-coding RAB41 RAB41, member RAS oncogene family O RAB41, member RAS homolog family|ras-related protein Rab-41 20121230 -9606 347527 ARSH - sulfatase HGNC:32488|MIM:300586|Ensembl:ENSG00000205667|HPRD:16509|Vega:OTTHUMG00000159612 X Xp22.33 arylsulfatase family, member H protein-coding ARSH arylsulfatase family, member H O ASH|arylsulfatase H 20121230 -9606 347541 MAGEB5 - CT3.3|MAGE-B5 HGNC:23795|MIM:300466 X Xp21.3 melanoma antigen family B, 5 protein-coding MAGEB5 melanoma antigen family B, 5 O MAGE family testis and tumor-specific protein|MAGE-B5 antigen|cancer/testis antigen 3.3|cancer/testis antigen family 3, member 3|melanoma-associated antigen B5 20121208 -9606 347544 RPL18AP16 hCG_2040224 RPL18A_10_1821 HGNC:36288 X Xq28 ribosomal protein L18a pseudogene 16 pseudo RPL18AP16 ribosomal protein L18a pseudogene 16 O - 20121230 -9606 347549 CENPVP3 - - HGNC:43880 X Xp11.22 centromere protein V pseudogene 3 pseudo CENPVP3 centromere protein V pseudogene 3 O - 20121230 -9606 347584 TSPY11P - TSPYP1 HGNC:23903 Y Yp11.2 testis specific protein, Y-linked 11, pseudogene pseudo TSPY11P testis specific protein, Y-linked 11, pseudogene O - 20121209 -9606 347587 MRP63P10 - - HGNC:23965 Y Yp11.2 mitochondrial ribosomal protein 63 pseudogene 10 pseudo MRP63P10 mitochondrial ribosomal protein 63 pseudogene 10 O - 20121230 -9606 347598 RBMY2DP - RBM|RBMY2 HGNC:23259 Y Yq11.23 RNA binding motif protein, Y-linked, family 2, member D pseudogene pseudo RBMY2DP RNA binding motif protein, Y-linked, family 2, member D pseudogene O - 20121209 -9606 347613 PARP4P1 - ADPRTL1P|PARP4P|PARP4PY1 HGNC:18500 Y Yq11.23 poly (ADP-ribose) polymerase family, member 4 pseudogene 1 pseudo PARP4P1 poly (ADP-ribose) polymerase family, member 4 pseudogene 1 O - 20121230 -9606 347673 EIF2S2P2 - bcm2636 HGNC:24654 3 3q27.2 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 2 pseudo EIF2S2P2 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 2 O - 20121230 -9606 347674 LOC347674 - - - 7 7q32 armadillo repeat containing, X-linked 2 pseudogene pseudo - - - - 20121230 -9606 347675 EIF2S2P5 - - HGNC:37793 1 1p13.1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 5 pseudo EIF2S2P5 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 5 O - 20121230 -9606 347686 SNORD64 - HBII-13 HGNC:32725 15 15q12 small nucleolar RNA, C/D box 64 snoRNA SNORD64 small nucleolar RNA, C/D box 64 O - 20121230 -9606 347687 GNG5P2 RP3-364I1.1 GNG5ps|dJ364I1.1 HGNC:24826 X Xq23 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2 pseudo GNG5P2 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2 O - 20121230 -9606 347688 TUBB8 RP11-631M21.2 bA631M21.2 HGNC:20773|Ensembl:ENSG00000173876|HPRD:18244|Vega:OTTHUMG00000017524 10 10p15.3 tubulin, beta 8 class VIII protein-coding TUBB8 tubulin, beta 8 class VIII O HSA10p15 beta-tubulin 4Q|class VIII beta-tubulin|tubulin beta-8 chain 20121230 -9606 347689 SOX2-OT - NCRNA00043|SOX2OT HGNC:20209 3 3q26.33 SOX2 overlapping transcript (non-protein coding) miscRNA SOX2-OT SOX2 overlapping transcript (non-protein coding) O - 20121230 -9606 347694 ECEL1P2 - ECEL2 HGNC:14019 2 2q37.1 endothelin converting enzyme-like 1, pseudogene 2 pseudo ECEL1P2 endothelin converting enzyme-like 1, pseudogene 2 O - 20121230 -9606 347701 S100A11P2 - - HGNC:37840 7 7p14.2 S100 calcium binding protein A11 pseudogene 2 pseudo S100A11P2 S100 calcium binding protein A11 pseudogene 2 O - 20121230 -9606 347702 MRPS36P4 - - HGNC:29774 11 11q23.2 mitochondrial ribosomal protein S36 pseudogene 4 pseudo MRPS36P4 mitochondrial ribosomal protein S36 pseudogene 4 O - 20121230 -9606 347703 MRPS36P5 - - HGNC:29775 12 12q12 mitochondrial ribosomal protein S36 pseudogene 5 pseudo MRPS36P5 mitochondrial ribosomal protein S36 pseudogene 5 O - 20121230 -9606 347704 MRPS36P3 - - HGNC:29773 8 8q24.13 mitochondrial ribosomal protein S36 pseudogene 3 pseudo MRPS36P3 mitochondrial ribosomal protein S36 pseudogene 3 O - 20121230 -9606 347705 MRPS36P1 - - HGNC:29771 3 3p25.3 mitochondrial ribosomal protein S36 pseudogene 1 pseudo MRPS36P1 mitochondrial ribosomal protein S36 pseudogene 1 O - 20121230 -9606 347706 MRPS36P2 - - HGNC:29772 4 4q35.1 mitochondrial ribosomal protein S36 pseudogene 2 pseudo MRPS36P2 mitochondrial ribosomal protein S36 pseudogene 2 O - 20121230 -9606 347707 MRPS36P6 - - HGNC:29776 20 20p12.1 mitochondrial ribosomal protein S36 pseudogene 6 pseudo MRPS36P6 mitochondrial ribosomal protein S36 pseudogene 6 O - 20121230 -9606 347713 DFNA42 - DFNA52 HGNC:20791 5 5q31.1-q32 deafness, autosomal dominant 42 unknown DFNA42 deafness, autosomal dominant 42 O - 20110215 -9606 347715 LOC347715 - - - 17 17p11.1 FLJ11800 related gene protein-coding - - - - 20100404 -9606 347716 USP32P3 - - HGNC:43576 17 17p11.1 ubiquitin specific peptidase 32 pseudogene 3 pseudo USP32P3 ubiquitin specific peptidase 32 pseudogene 3 O - 20121230 -9606 347717 SRP68P3 - SRPSMCR HGNC:30428 17 17p11.1 signal recognition particle 68kDa pseudogene 3 pseudo SRP68P3 signal recognition particle 68kDa pseudogene 3 O - 20121230 -9606 347720 COTL1P2 - CLPSMCR HGNC:24322 17 17p11.1 coactosin-like 1 (Dictyostelium) pseudogene 2 pseudo COTL1P2 coactosin-like 1 (Dictyostelium) pseudogene 2 O - 20121230 -9606 347730 LRRTM1 UNQ675/PRO1309 - HGNC:19408|MIM:610867|Ensembl:ENSG00000162951|HPRD:14323|Vega:OTTHUMG00000130021 2 2p12 leucine rich repeat transmembrane neuronal 1 protein-coding LRRTM1 leucine rich repeat transmembrane neuronal 1 O leucine-rich repeat transmembrane neuronal 1 protein|leucine-rich repeat transmembrane neuronal protein 1 20121230 -9606 347731 LRRTM3 UNQ803/PRO1693 - HGNC:19410|MIM:610869|Ensembl:ENSG00000198739|HPRD:14324|Vega:OTTHUMG00000018332 10 10q21.3 leucine rich repeat transmembrane neuronal 3 protein-coding LRRTM3 leucine rich repeat transmembrane neuronal 3 O leucine-rich repeat transmembrane neuronal protein 3 20121230 -9606 347732 CATSPER3 - CACRC HGNC:20819|MIM:609120|Ensembl:ENSG00000152705|HPRD:16447|Vega:OTTHUMG00000129137 5 5q31.1 cation channel, sperm associated 3 protein-coding CATSPER3 cation channel, sperm associated 3 O ca(v)-like protein|calcium channel repeat containing 1|cation channel sperm-associated protein 3|one-repeat calcium channel-like protein|putative ion channel CatSper3 20121230 -9606 347733 TUBB2B RP11-506K6.1 PMGYSA|bA506K6.1 HGNC:30829|MIM:612850|Ensembl:ENSG00000137285|HPRD:14707|Vega:OTTHUMG00000014143 6 6p25 tubulin, beta 2B class IIb protein-coding TUBB2B tubulin, beta 2B class IIb O class II beta-tubulin isotype|class IIb beta-tubulin|tubulin beta-2B chain|tubulin, beta polypeptide paralog 20121230 -9606 347734 SLC35B2 RP1-302G2.3 PAPST1|SLL|UGTrel4 HGNC:16872|MIM:610788|Ensembl:ENSG00000157593|HPRD:11576|Vega:OTTHUMG00000014760 6 6p12.1-p11.2 solute carrier family 35, member B2 protein-coding SLC35B2 solute carrier family 35, member B2 O 3'-phosphoadenosine 5'-phosphosulfate transporter|PAPS transporter 1|adenosine 3'-phospho 5'-phosphosulfate transporter 1|putative MAPK-activating protein PM15|putative NF-kappa-B-activating protein 48|solute carrier family 35 member B2 variant 2 20121230 -9606 347735 SERINC2 FKSG84 PRO0899|TDE2|TDE2L HGNC:23231|MIM:614549|Ensembl:ENSG00000168528|HPRD:15481|Vega:OTTHUMG00000003796 1 1p35.1 serine incorporator 2 protein-coding SERINC2 serine incorporator 2 O tumor differentially expressed protein 2 20121230 -9606 347736 NME9 - NM23-H9|TXL-2|TXL2|TXNDC6 HGNC:21343|Ensembl:ENSG00000181322|HPRD:18250|Vega:OTTHUMG00000159823 3 3q22.3 NME/NM23 family member 9 protein-coding NME9 NME/NM23 family member 9 O NME family member 9|NME gene family member 9|thioredoxin domain containing 6|thioredoxin domain-containing protein 6|thioredoxin-like 2|thioredoxin-like protein 2 20121230 -9606 347737 DFNA31 - - HGNC:2803|MIM:608645 6 6p21 deafness, autosomal dominant 31 unknown DFNA31 deafness, autosomal dominant 31 O - 20120622 -9606 347741 OTOP3 - - HGNC:19658|MIM:607828|Ensembl:ENSG00000182938|HPRD:09700|Vega:OTTHUMG00000179216 17 17q25.1 otopetrin 3 protein-coding OTOP3 otopetrin 3 O otopetrin-3 20121230 -9606 347744 C6orf52 - - HGNC:20881|Ensembl:ENSG00000137434|Vega:OTTHUMG00000014240 6 6p24.1 chromosome 6 open reading frame 52 protein-coding C6orf52 chromosome 6 open reading frame 52 O putative uncharacterized protein C6orf52 20121230 -9606 347745 PAR4 - - - 15 15q11.2 Prader-Willi/Angelman region gene 4 miscRNA - - - - 20121230 -9606 347746 PAR-SN - - - 15 15q11.2 paternally expressed transcript PAR-SN miscRNA - - - - 20121230 -9606 347747 HPCQTL19 - - MIM:607592 19 19q Prostate cancer aggressiveness quantitative trait locus on chromosome 19 unknown - - - - 20120622 -9606 347853 TBX10 - TBX13|TBX7 HGNC:11593|MIM:604648|Ensembl:ENSG00000167800|HPRD:06872|Vega:OTTHUMG00000167291 11 11q13.2 T-box 10 protein-coding TBX10 T-box 10 O T-box 7|T-box protein 10|T-box transcription factor TBX10|T-box-containing transcriptional activator 20121230 -9606 347862 PDDC1 - - HGNC:26616|Ensembl:ENSG00000177225|HPRD:08172|Vega:OTTHUMG00000133315 11 11p15.5 Parkinson disease 7 domain containing 1 protein-coding PDDC1 Parkinson disease 7 domain containing 1 O Parkinson disease 7 domain-containing protein 1 20121230 -9606 347894 MRPL2P1 - - HGNC:29698 12 12q21.33 mitochondrial ribosomal protein L2 pseudogene 1 pseudo MRPL2P1 mitochondrial ribosomal protein L2 pseudogene 1 O - 20121230 -9606 347902 AMIGO2 - ALI1|AMIGO-2|DEGA HGNC:24073|Ensembl:ENSG00000139211|HPRD:16483|Vega:OTTHUMG00000169616 12 12q13.11 adhesion molecule with Ig-like domain 2 protein-coding AMIGO2 adhesion molecule with Ig-like domain 2 O alivin 1|amphoterin induced gene 2|amphoterin-induced protein 2|differentially expressed in gastric adenocarcinoma|differentially expressed in gastric adenocarcinomas|transmembrane protein AMIGO2 20121230 -9606 347918 EP400NL - - HGNC:26602|HPRD:13413 12 12q24.33 EP400 N-terminal like pseudo EP400NL EP400 N-terminal like O - 20121230 -9606 347933 NLRP9P - NOD25 HGNC:29888 12 12q24.33 NLR family, pyrin domain containing 9 pseudogene pseudo NLRP9P NLR family, pyrin domain containing 9 pseudogene O - 20121230 -9606 347975 VENTXP2 - VENTX2P2 HGNC:30901 13 13q31.1 VENT homeobox pseudogene 2 pseudo VENTXP2 VENT homeobox pseudogene 2 O - 20121230 -9606 348013 TMEM255B RP11-199F6.1 FAM70B HGNC:28297|Ensembl:ENSG00000184497|HPRD:14474|Vega:OTTHUMG00000017398 13 13q34 transmembrane protein 255B protein-coding TMEM255B transmembrane protein 255B O family with sequence similarity 70, member B|protein FAM70B 20121230 -9606 348021 LINC00442 - - HGNC:42779 13 13q12.11 long intergenic non-protein coding RNA 442 miscRNA LINC00442 long intergenic non-protein coding RNA 442 O - 20121230 -9606 348035 MGC40069 - - HPRD:17547 14 14q11.2 uncharacterized protein MGC40069 other - - - - 20111109 -9606 348040 LOC348040 - - - 14 14q22.1 uncharacterized LOC348040 protein-coding - - - - 20111113 -9606 348093 RBPMS2 - - HGNC:19098|Ensembl:ENSG00000166831|HPRD:18601|Vega:OTTHUMG00000172423 15 15q22.31 RNA binding protein with multiple splicing 2 protein-coding RBPMS2 RNA binding protein with multiple splicing 2 O RNA-binding protein with multiple splicing 2 20121230 -9606 348094 ANKDD1A - - HGNC:28002|Ensembl:ENSG00000166839|HPRD:14178|Vega:OTTHUMG00000133051 15 15q22.31 ankyrin repeat and death domain containing 1A protein-coding ANKDD1A ankyrin repeat and death domain containing 1A O ankyrin repeat and death domain-containing protein 1A 20121230 -9606 348110 C15orf38 - - HGNC:28782|Ensembl:ENSG00000242498|HPRD:14697|Vega:OTTHUMG00000154515 15 15q26.1 chromosome 15 open reading frame 38 protein-coding C15orf38 chromosome 15 open reading frame 38 O UPF0552 protein C15orf38 20121230 -9606 348120 CT60 - - HGNC:28003 15 15q11.2 cancer/testis antigen 60 (non-protein coding) miscRNA CT60 cancer/testis antigen 60 (non-protein coding) O - 20121230 -9606 348156 PKD1P5 - HG5 HGNC:30069 16 16p12.3 polycystic kidney disease 1 (autosomal dominant) pseudogene 5 pseudo PKD1P5 polycystic kidney disease 1 (autosomal dominant) pseudogene 5 O - 20121230 -9606 348158 ACSM2B HYST1046 ACSM2|HXMA HGNC:30931|MIM:614359|Ensembl:ENSG00000066813|HPRD:17124|Vega:OTTHUMG00000131555 16 16p12.3 acyl-CoA synthetase medium-chain family member 2B protein-coding ACSM2B acyl-CoA synthetase medium-chain family member 2B O acyl-CoA synthetase medium-chain family member 2|acyl-coenzyme A synthetase ACSM2B, mitochondrial|butyrate--CoA ligase 2B|butyryl-coenzyme A synthetase 2B|middle-chain acyl-CoA synthetase 2B|xenobiotic/medium-chain fatty acid-CoA ligase HXM-A|xenobiotic/medium-chain fatty acid:CoA ligase 20121230 -9606 348162 LOC348162 - - - 16 16p11.2 uncharacterized protein 348162 protein-coding - - - PI-3-kinase-related kinase SMG-1 isoform 1homolog|putative NPIP-like protein ENSP00000342480 20111025 -9606 348174 CLEC18A - MRCL|MRCL1|MRLP2 HGNC:30388|Ensembl:ENSG00000157322|HPRD:17360|Vega:OTTHUMG00000137574 16 16q22.1 C-type lectin domain family 18, member A protein-coding CLEC18A C-type lectin domain family 18, member A O C-type lectin domain family 18 member A|mannose receptor-like 1|mannose receptor-like protein 2|mannose receptor-like protein 3 20121230 -9606 348180 CTU2 - C16orf84|NCS2|UPF0432 HGNC:28005|Ensembl:ENSG00000174177|HPRD:18372|Vega:OTTHUMG00000173417 16 16q24.3 cytosolic thiouridylase subunit 2 homolog (S. pombe) protein-coding CTU2 cytosolic thiouridylase subunit 2 homolog (S. pombe) O cytoplasmic tRNA 2-thiolation protein 2 20121230 -9606 348210 LOC348210 - - - 16 16p11.2 mitochondrial ribosomal protein 63 pseudogene pseudo - - - - 20121230 -9606 348235 SKA2 - FAM33A HGNC:28006|Ensembl:ENSG00000182628|HPRD:13306|Vega:OTTHUMG00000179361 17 17q22 spindle and kinetochore associated complex subunit 2 protein-coding SKA2 spindle and kinetochore associated complex subunit 2 O family with sequence similarity 33, member A|spindle and KT (kinetochore) associated 2|spindle and kinetochore-associated protein 2 20121230 -9606 348249 CCL15-CCL14 - - HGNC:44436 17 17q12 CCL15-CCL14 readthrough (non-protein coding) miscRNA CCL15-CCL14 CCL15-CCL14 readthrough (non-protein coding) O - 20121230 -9606 348254 CCDC144C - - HGNC:29073 17 17p11.2 coiled-coil domain containing 144C pseudo CCDC144C coiled-coil domain containing 144C O - 20121230 -9606 348262 FAM195B - - HGNC:28007|Ensembl:ENSG00000225663|HPRD:14179|Vega:OTTHUMG00000177915 17 17q25.3 family with sequence similarity 195, member B protein-coding FAM195B family with sequence similarity 195, member B O protein FAM195B 20121230 -9606 348303 SELV - - MIM:607919|Ensembl:ENSG00000186838|HPRD:12134|Vega:OTTHUMG00000166446 19 19q13.2 selenoprotein V protein-coding - - - - 20121230 -9606 348327 ZNF530 - - HGNC:29297|Ensembl:ENSG00000183647|HPRD:15822 19 19q13.43 zinc finger protein 530 protein-coding ZNF530 zinc finger protein 530 O - 20121230 -9606 348378 FAM159A UNQ2783/PRO7171 PRO7171|WWLS2783 HGNC:28757|Ensembl:ENSG00000182183|HPRD:14678|Vega:OTTHUMG00000008330 1 1p32.3 family with sequence similarity 159, member A protein-coding FAM159A family with sequence similarity 159, member A O membrane protein FAM159A 20121230 -9606 348487 FAM131C - C1orf117|RP11-5P18.9 HGNC:26717|Ensembl:ENSG00000185519|HPRD:08779|Vega:OTTHUMG00000009525 1 1p36.13 family with sequence similarity 131, member C protein-coding FAM131C family with sequence similarity 131, member C O protein FAM131C 20121230 -9606 348567 TERF1P1 - TERF1P HGNC:16733 21 21q11.2 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 1 pseudo TERF1P1 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 1 O - 20121230 -9606 348645 C22orf34 RP1-29C18.7 - HGNC:28010|HPRD:14180 22 22q13.33 chromosome 22 open reading frame 34 miscRNA C22orf34 chromosome 22 open reading frame 34 O - 20121230 -9606 348654 GEN1 - Gen HGNC:26881|MIM:612449|Ensembl:ENSG00000178295|HPRD:08813|Vega:OTTHUMG00000121173 2 2p24.2 Gen endonuclease homolog 1 (Drosophila) protein-coding GEN1 Gen endonuclease homolog 1 (Drosophila) O Gen homolog 1, endonuclease|flap endonuclease GEN homolog 1 20121230 -9606 348738 C2orf48 - - HGNC:26322|Ensembl:ENSG00000163009|HPRD:08049|Vega:OTTHUMG00000119017 2 2p25.1 chromosome 2 open reading frame 48 protein-coding C2orf48 chromosome 2 open reading frame 48 O uncharacterized protein C2orf48 20121230 -9606 348751 FONG - - MIM:614308 2 2q33.1 uncharacterized LOC348751 miscRNA - - - - 20121230 -9606 348761 LOC348761 - - - 2 2q37.1 uncharacterized LOC348761 miscRNA - - - - 20121230 -9606 348793 WDR53 - - HGNC:28786|Ensembl:ENSG00000185798|HPRD:14700|Vega:OTTHUMG00000155572 3 3q29 WD repeat domain 53 protein-coding WDR53 WD repeat domain 53 O WD domain, G-beta repeat-containing protein|WD repeat-containing protein 53 20121230 -9606 348801 LNP1 - - HGNC:28014|Ensembl:ENSG00000206535|Vega:OTTHUMG00000159082 3 3q12.2 leukemia NUP98 fusion partner 1 protein-coding LNP1 leukemia NUP98 fusion partner 1 O - 20121230 -9606 348807 CCDC37 - - HGNC:26842|Ensembl:ENSG00000163885|HPRD:08805|Vega:OTTHUMG00000162691 3 3q21.3 coiled-coil domain containing 37 protein-coding CCDC37 coiled-coil domain containing 37 O coiled-coil domain-containing protein 37 20121230 -9606 348808 NPHP3-AS1 - NCRNA00119 HGNC:24129 3 3q22.1 NPHP3 antisense RNA 1 miscRNA NPHP3-AS1 NPHP3 antisense RNA 1 O - 20121230 -9606 348817 LOC348817 - - - 3 3p21.33 uncharacterized LOC348817 unknown - - - - 20120508 -9606 348825 TPRXL - - HGNC:32178|MIM:611167 3 3p25.1 tetra-peptide repeat homeobox-like pseudo TPRXL tetra-peptide repeat homeobox-like O - 20121230 -9606 348840 ANKRD18DP - - HGNC:28016|HPRD:14181 3 3q29 ankyrin repeat domain 18D, pseudogene pseudo ANKRD18DP ankyrin repeat domain 18D, pseudogene O - 20121230 -9606 348910 RAF1P1 - - HGNC:9830 4 4p16.1 v-raf-1 murine leukemia viral oncogene homolog 1 pseudogene 1 pseudo RAF1P1 v-raf-1 murine leukemia viral oncogene homolog 1 pseudogene 1 O - 20121230 -9606 348926 FAM86EP - - HGNC:28017 4 4p16.3 family with sequence similarity 86, member A pseudogene pseudo FAM86EP family with sequence similarity 86, member E, pseudogene O - 20121230 -9606 348932 SLC6A18 - Xtrp2 HGNC:26441|MIM:610300|Ensembl:ENSG00000164363|HPRD:15396|Vega:OTTHUMG00000090356 5 5p15.33 solute carrier family 6, member 18 protein-coding SLC6A18 solute carrier family 6, member 18 O sodium channel-like protein|sodium- and chloride-dependent transporter XTRP2|sodium-dependent neutral amino acid transporter B(0)AT3|solute carrier family 6 (neurotransmitter transporter), member 18|system B(0) neutral amino acid transporter AT3 20121230 -9606 348938 NIPAL4 - ICHTHYIN|ICHYN HGNC:28018|MIM:609383|Ensembl:ENSG00000172548|Vega:OTTHUMG00000163497 5 5q33.3 NIPA-like domain containing 4 protein-coding NIPAL4 NIPA-like domain containing 4 O NIPA-like protein 4|magnesium transporter NIPA4|non-imprinted in Prader-Willi/Angelman syndrome region protein 4 20121230 -9606 348958 LOC348958 - - - 5 5q23.1 mitochondrial ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 348980 HCN1 - BCNG-1|BCNG1|HAC-2 HGNC:4845|MIM:602780|Ensembl:ENSG00000164588|HPRD:09099|Vega:OTTHUMG00000131155 5 5p12 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 protein-coding HCN1 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 O brain cyclic nucleotide gated channel 1|brain cyclic nucleotide-gated channel 1|potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 20121230 -9606 348995 NUP43 - bA350J20.1|p42 HGNC:21182|MIM:608141|Ensembl:ENSG00000120253|HPRD:12174|Vega:OTTHUMG00000015795 6 6q25.1 nucleoporin 43kDa protein-coding NUP43 nucleoporin 43kDa O nucleoporin Nup43|nup107-160 subcomplex subunit Nup43 20121230 -9606 349075 ZNF713 - - HGNC:22043|Ensembl:ENSG00000178665|HPRD:13440|Vega:OTTHUMG00000156175 7 7p11.2 zinc finger protein 713 protein-coding ZNF713 zinc finger protein 713 O - 20121230 -9606 349114 LINC00265 - NCRNA00265 HGNC:28019|HPRD:14182 7 7p14.1 long intergenic non-protein coding RNA 265 miscRNA LINC00265 long intergenic non-protein coding RNA 265 O - 20121230 -9606 349136 WDR86 - - HGNC:28020|Ensembl:ENSG00000187260|HPRD:14183|Vega:OTTHUMG00000150764 7 7q36.1 WD repeat domain 86 protein-coding WDR86 WD repeat domain 86 O WD repeat-containing protein 86 20121230 -9606 349149 GJC3 - CX29|CX30.2|CX31.3|GJE1 HGNC:17495|MIM:611925|Ensembl:ENSG00000176402|HPRD:13580|Vega:OTTHUMG00000156649 7 7q22.1 gap junction protein, gamma 3, 30.2kDa protein-coding GJC3 gap junction protein, gamma 3, 30.2kDa O connexin 29|connexin-30.2|connexin-31.3|gap junction epsilon-1 protein|gap junction gamma-3 protein 20121230 -9606 349152 DPY19L2P2 - - HGNC:21764|HPRD:08772 7 7q22.1 dpy-19-like 2 pseudogene 2 (C. elegans) pseudo DPY19L2P2 dpy-19-like 2 pseudogene 2 (C. elegans) O - 20121230 -9606 349158 CYCSP20 - HCP20 HGNC:24394 7 7q32.1 cytochrome c, somatic pseudogene 20 pseudo CYCSP20 cytochrome c, somatic pseudogene 20 O - 20121230 -9606 349160 LOC349160 - - - 7 7q34 uncharacterized LOC349160 miscRNA - - - - 20121230 -9606 349196 LOC349196 - - - 8 8p23.1 uncharacterized LOC349196 miscRNA - - - - 20121209 -9606 349198 CYCSP3 - HCP21|HS7 HGNC:24395 8 8p12 cytochrome c, somatic pseudogene 3 pseudo CYCSP3 cytochrome c, somatic pseudogene 3 O - 20121230 -9606 349334 FOXD4L4 - FOXD4b|bA460E7.2 HGNC:23762|Ensembl:ENSG00000184659|HPRD:17013|Vega:OTTHUMG00000013337 9 9q21.11 forkhead box D4-like 4 protein-coding FOXD4L4 forkhead box D4-like 4 O FOXD4-like 4|forkhead box protein D4-like 4|forkhead box protein D4b|myeloid factor-gamma|winged helix factor-1|winged helix transcription factor beta 20121216 -9606 349372 NANOGP10 - NANOGP5 HGNC:23108 X Xp11.3 Nanog homeobox pseudogene 10 pseudo NANOGP10 Nanog homeobox pseudogene 10 O - 20121230 -9606 349386 NANOGP9 - NANOGP6 HGNC:23107 X Xq12 Nanog homeobox pseudogene 9 pseudo NANOGP9 Nanog homeobox pseudogene 9 O - 20121230 -9606 349391 CYCSP44 - HCP44 HGNC:24418 X Xq27.3 cytochrome c, somatic pseudogene 44 pseudo CYCSP44 cytochrome c, somatic pseudogene 44 O - 20121230 -9606 349408 TLR8-AS1 - - HGNC:40720 X Xp22.31 TLR8 antisense RNA 1 miscRNA TLR8-AS1 TLR8 antisense RNA 1 O - 20121230 -9606 349448 TUBB1P1 - - HGNC:23982 Y Yq11.222 tubulin, beta 1 pseudogene 1 pseudo TUBB1P1 tubulin, beta 1 pseudogene 1 O - 20121209 -9606 349565 NMNAT3 FKSG76 PNAT-3|PNAT3 HGNC:20989|MIM:608702|Ensembl:ENSG00000163864|HPRD:16370|Vega:OTTHUMG00000159951 3 3q23 nicotinamide nucleotide adenylyltransferase 3 protein-coding NMNAT3 nicotinamide nucleotide adenylyltransferase 3 O NMN adenylyltransferase 3|NaMN adenylyltransferase 3|nicotinamide mononucleotide adenylyltransferase 3|nicotinate-nucleotide adenylyltransferase 3|pyridine nucleotide adenylyltransferase 3 20121230 -9606 349633 C11orf34 - PLET1 HGNC:30053|MIM:611904|Ensembl:ENSG00000188771|Vega:OTTHUMG00000167189 11 11q23.1 chromosome 11 open reading frame 34 protein-coding C11orf34 chromosome 11 open reading frame 34 O placenta expressed transcript 1|placenta-expressed transcript 1 protein 20121230 -9606 349667 RTN4RL2 - NGRH1|NgR2 HGNC:23053|MIM:610462|Ensembl:ENSG00000186907|HPRD:11524|Vega:OTTHUMG00000167028 11 11q12.1 reticulon 4 receptor-like 2 protein-coding RTN4RL2 reticulon 4 receptor-like 2 O Nogo-66 receptor homolog 1|nogo receptor-like 3|nogo-66 receptor-related protein 2|reticulon-4 receptor-like 2 20121230 -9606 349814 VENTXP3 - VENTX2P3 HGNC:30902 12 12q21.1 VENT homeobox pseudogene 3 pseudo VENTXP3 VENT homeobox pseudogene 3 O - 20121230 -9606 349842 MRPS18CP4 - - HGNC:29745 12 12p13.31 mitochondrial ribosomal protein S18C pseudogene 4 pseudo MRPS18CP4 mitochondrial ribosomal protein S18C pseudogene 4 O - 20121230 -9606 350297 MRPS21P8 - - HGNC:29755 16 16q12.1 mitochondrial ribosomal protein S21 pseudogene 8 pseudo MRPS21P8 mitochondrial ribosomal protein S21 pseudogene 8 O - 20121230 -9606 350383 GPR142 - PGR2 HGNC:20088|MIM:609046|Ensembl:ENSG00000257008|HPRD:16424|Vega:OTTHUMG00000178581 17 17q25.1 G protein-coupled receptor 142 protein-coding GPR142 G protein-coupled receptor 142 O G-protein coupled receptor PGR2|probable G-protein coupled receptor 142 20121230 -9606 351143 MRPL50P1 - - HGNC:29719 2 2p22.3 mitochondrial ribosomal protein L50 pseudogene 1 pseudo MRPL50P1 mitochondrial ribosomal protein L50 pseudogene 1 O - 20121230 -9606 351355 LOC351355 - - - 2 2q34 replication factor C (activator 1) 2, 40kDa pseudogene pseudo - - - - 20100721 -9606 351449 MRPS31P1 - - HGNC:29763 3 3p21.33 mitochondrial ribosomal protein S31 pseudogene 1 pseudo MRPS31P1 mitochondrial ribosomal protein S31 pseudogene 1 O - 20121230 -9606 351773 MRPL51P1 - - HGNC:29723 4 4p15.2 mitochondrial ribosomal protein L51 pseudogene 1 pseudo MRPL51P1 mitochondrial ribosomal protein L51 pseudogene 1 O - 20121230 -9606 352290 MRPS23P1 - - HGNC:29758 7 7p13 mitochondrial ribosomal protein S23 pseudogene 1 pseudo MRPS23P1 mitochondrial ribosomal protein S23 pseudogene 1 O - 20121230 -9606 352852 CYCSP45 - HCP45 HGNC:24419 X Xq28 cytochrome c, somatic pseudogene 45 pseudo CYCSP45 cytochrome c, somatic pseudogene 45 O - 20121230 -9606 352887 GYG2P1 - GYG2P HGNC:4701 Y Yq11.21 glycogenin 2 pseudogene 1 pseudo GYG2P1 glycogenin 2 pseudogene 1 O - 20121230 -9606 352896 GPR143P - OA1P HGNC:18499 Y Yp11.2 G protein-coupled receptor 143 pseudogene pseudo GPR143P G protein-coupled receptor 143 pseudogene O - 20121230 -9606 352905 CTBP2P1 - - HGNC:23940 Y Yq12 C-terminal binding protein 2 pseudogene 1 pseudo CTBP2P1 C-terminal binding protein 2 pseudogene 1 O - 20121209 -9606 352909 DNAAF3 - C19orf51|CILD2|DAB1|PCD|PF22 HGNC:30492|MIM:614566|Ensembl:ENSG00000167646|HPRD:14185|Vega:OTTHUMG00000128547 19 19q13.4 dynein, axonemal, assembly factor 3 protein-coding DNAAF3 dynein, axonemal, assembly factor 3 O UPF0470 protein C19orf51|ciliary dyskinesia, primary 2|dynein assembly factor 3, axonemal 20121230 -9606 352954 GATS tcag7.1177 STAG3OS HGNC:29954|Ensembl:ENSG00000160844|HPRD:17030 7 7q22.1 GATS, stromal antigen 3 opposite strand protein-coding GATS GATS, stromal antigen 3 opposite strand O STAG3 opposite strand transcript protein|opposite strand transcription unit to STAG3|putative protein GATS|stromal antigen 3 opposite strand 20121230 -9606 352956 MMVP2 - - HGNC:19145|MIM:607829 11 11p15.4 myxomatous mitral valve prolapse 2 unknown MMVP2 myxomatous mitral valve prolapse 2 O - 20120622 -9606 352957 MICF - - HGNC:16801 6 6p21.3 MHC class I polypeptide-related sequence F (pseudogene) pseudo MICF MHC class I polypeptide-related sequence F (pseudogene) O - 20121230 -9606 352961 HCG26 - 3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4 HGNC:29671 6 6p21.3 HLA complex group 26 (non-protein coding) miscRNA HCG26 HLA complex group 26 (non-protein coding) O - 20121230 -9606 352962 HLA-V XXbac-BCX209H21.4 HLA-75|dJ377H14.4 HGNC:23482 6 6p21.3 major histocompatibility complex, class I, V (pseudogene) pseudo HLA-V major histocompatibility complex, class I, V (pseudogene) O - 20121230 -9606 352963 HLA-P - C6orf101|HLA-90|dJ377H14.3 HGNC:21196 6 6p21.2 major histocompatibility complex, class I, P (pseudogene) pseudo HLA-P major histocompatibility complex, class I, P (pseudogene) O - 20121230 -9606 352964 HLA-T - HLA-16 HGNC:23478 6 6p21.3 major histocompatibility complex, class I, T (pseudogene) pseudo HLA-T major histocompatibility complex, class I, T (pseudogene) O - 20121230 -9606 352965 HLA-U - HLA-21 HGNC:23477 6 6p21.3 major histocompatibility complex, class I, U (pseudogene) pseudo HLA-U major histocompatibility complex, class I, U (pseudogene) O - 20121230 -9606 352966 HLA-W - HLA-80 HGNC:23425 6 6p21.3 major histocompatibility complex, class I, W (pseudogene) pseudo HLA-W major histocompatibility complex, class I, W (pseudogene) O - 20121230 -9606 352967 MICG - - HGNC:16802 6 6p21.3 MHC class I polypeptide-related sequence G (pseudogene) pseudo MICG MHC class I polypeptide-related sequence G (pseudogene) O - 20121230 -9606 352990 HCP5B - HCP5P10|P5-10|P5.9 HGNC:30984 6 6p21.3 HLA complex P5B (non-protein coding) unknown HCP5B HLA complex P5B (non-protein coding) O - 20120726 -9606 352999 C6orf58 - - HGNC:20960|Ensembl:ENSG00000184530|HPRD:17379|Vega:OTTHUMG00000015530 6 6q22.33 chromosome 6 open reading frame 58 protein-coding C6orf58 chromosome 6 open reading frame 58 O UPF0762 protein C6orf58 20121230 -9606 353000 HCGVIII-2 - - - 6 6p21.3 HCGVIII-2 pseudogene pseudo - - - - 20121230 -9606 353001 HCG4P3 - HCGIV-03|HCGIV-3|HCGIV.2 HGNC:22922 6 6p21.3 HLA complex group 4 pseudogene 3 pseudo HCG4P3 HLA complex group 4 pseudogene 3 O - 20121230 -9606 353002 HCG4P4 - HCGIV-04|HCGIV-4|HCGIV.3 HGNC:22924 6 6p21.3 HLA complex group 4 pseudogene 4 pseudo HCG4P4 HLA complex group 4 pseudogene 4 O - 20121230 -9606 353003 HCG4P5 - HCGIV-05|HCGIV-5|HCGIV.4 HGNC:22925 6 6p21.3 HLA complex group 4 pseudogene 5 pseudo HCG4P5 HLA complex group 4 pseudogene 5 O - 20121230 -9606 353004 HCG4P7 - HCGIV-07|HCGIV-7|HCGIV.C HGNC:22926 6 6p21.3 HLA complex group 4 pseudogene 7 pseudo HCG4P7 HLA complex group 4 pseudogene 7 O - 20121230 -9606 353005 HCG4P8 - HCGIV-08|HCGIV-8|HCGIV.7 HGNC:22927 6 6p21.3 HLA complex group 4 pseudogene 8 pseudo HCG4P8 HLA complex group 4 pseudogene 8 O - 20121230 -9606 353007 3.8-1.2 - - - 6 6p21.3 HLA complex group 26 (non-protein coding) pseudogene pseudo - - - - 20120815 -9606 353008 3.8-1.3 - - - 6 6p21.3 HLA complex group 26 (non-protein coding) pseudogene pseudo - - - - 20121230 -9606 353009 3.8-1.4 - - - 6 6p21.3 HLA complex group 26 (non-protein coding) pseudogene pseudo - - - - 20121230 -9606 353010 3.8-1.5 - - - 6 6p21.3 HLA complex group 26 (non-protein coding) pseudogene pseudo - - - - 20121230 -9606 353013 RPL7AP7 - RPL7A_13_677|RPL7B|dJ377H14.2 HGNC:21395 6 6p21.3 ribosomal protein L7a pseudogene 7 pseudo RPL7AP7 ribosomal protein L7a pseudogene 7 O - 20121230 -9606 353014 HCG4P9 - HCGIV-09|HCGIV-9 HGNC:22928 6 6p21.3 HLA complex group 4 pseudogene 9 pseudo HCG4P9 HLA complex group 4 pseudogene 9 O - 20121230 -9606 353019 HCG9P5 - HCGIX-5|dJ377H14.6 HGNC:30983 6 6p21.3 HLA complex group 9 pseudogene 5 pseudo HCG9P5 HLA complex group 9 pseudogene 5 O - 20121230 -9606 353020 HCG4P11 - HCGIV-11|HCGIV.10 HGNC:22930 6 6p21.3 HLA complex group 4 pseudogene 11 pseudo HCG4P11 HLA complex group 4 pseudogene 11 O - 20121230 -9606 353088 ZNF429 - - HGNC:20817|Ensembl:ENSG00000197013|HPRD:18342 19 19p13.1 zinc finger protein 429 protein-coding ZNF429 zinc finger protein 429 O - 20121230 -9606 353089 RAET1F - - HGNC:16794 6 6q24.1-q25.1 retinoic acid early transcript 1F pseudogene pseudo RAET1F retinoic acid early transcript 1F pseudogene O - 20121230 -9606 353091 RAET1G - ULBP5 HGNC:16795|MIM:609244|Ensembl:ENSG00000203722|HPRD:16467|Vega:OTTHUMG00000015802 6 6q24.1-q25.1 retinoic acid early transcript 1G protein-coding RAET1G retinoic acid early transcript 1G O retinoic acid early transcript 1G protein|retinoic acid early transcript 1G pseudogene 20121230 -9606 353094 RAET1M - - HGNC:16799 6 6q25.1 retinoic acid early transcript 1M pseudogene pseudo RAET1M retinoic acid early transcript 1M pseudogene O - 20121230 -9606 353116 RILPL1 - GOSPEL|RLP1 HGNC:26814|MIM:614092|Ensembl:ENSG00000188026|HPRD:13435|Vega:OTTHUMG00000168686 12 12q24.31 Rab interacting lysosomal protein-like 1 protein-coding RILPL1 Rab interacting lysosomal protein-like 1 O RILP-like protein 1|rab-interacting lysosomal-like protein 1 20121230 -9606 353124 EIG2 - EGI14 MIM:606972 14 14q23 Epilepsy, idiopathic generalized, susceptibility to 2 unknown - - - - 20120622 -9606 353125 HDLC3 - - MIM:607687 16 16q24.1 High density lipoprotein cholesterol, low serum, 3 unknown - - - - 20120622 -9606 353126 OB10Q - - MIM:607514 10 10q Obesity, susceptibility to, on chromosome 10q unknown - - - - 20120622 -9606 353127 HDLC2 - - MIM:607053 8 8q23 High density lipoprotein cholesterol level QTL on chromosome 8 unknown - - - - 20121219 -9606 353128 AD8 - - MIM:607116 20 20p Alzheimer disease 8 unknown - - - - 20120622 -9606 353131 LCE1A - LEP1 HGNC:29459|MIM:612603|Ensembl:ENSG00000186844|HPRD:13966 1 1q21.3 late cornified envelope 1A protein-coding LCE1A late cornified envelope 1A O late cornified envelope protein 1A|late envelope protein 1 20121230 -9606 353132 LCE1B - LEP2|SPRL2A HGNC:16611|MIM:612604|Ensembl:ENSG00000196734|HPRD:17259|Vega:OTTHUMG00000014402 1 1q21.3 late cornified envelope 1B protein-coding LCE1B late cornified envelope 1B O late cornified envelope protein 1B|late envelope protein 2|small proline rich-like (epidermal differentiation complex) 2A|small proline-rich-like epidermal differentiation complex protein 2A 20121230 -9606 353133 LCE1C - LEP3 HGNC:29464|MIM:612605|Ensembl:ENSG00000197084|HPRD:13967|Vega:OTTHUMG00000012445 1 1q21.3 late cornified envelope 1C protein-coding LCE1C late cornified envelope 1C O late cornified envelope protein 1C|late envelope protein 3 20121230 -9606 353134 LCE1D - LEP4 HGNC:29465|MIM:612606|Ensembl:ENSG00000172155|HPRD:13968|Vega:OTTHUMG00000012444 1 1q21.3 late cornified envelope 1D protein-coding LCE1D late cornified envelope 1D O late cornified envelope protein 1D|late envelope protein 4 20121230 -9606 353135 LCE1E - LEP5 HGNC:29466|MIM:612607|Ensembl:ENSG00000186226|HPRD:13969|Vega:OTTHUMG00000012405 1 1q21.3 late cornified envelope 1E protein-coding LCE1E late cornified envelope 1E O late cornified envelope protein 1E|late envelope protein 5 20121230 -9606 353137 LCE1F - LEP6 HGNC:29467|MIM:612608|Ensembl:ENSG00000240386|HPRD:13970|Vega:OTTHUMG00000012403 1 1q21.3 late cornified envelope 1F protein-coding LCE1F late cornified envelope 1F O late cornified envelope protein 1F|late envelope protein 6 20121230 -9606 353138 LEP7 - - - 1 1q21.3 late envelope protein 7 protein-coding - - - uncharacterized protein LOC353138 20111026 -9606 353139 LCE2A - LEP9 HGNC:29469|MIM:612609|Ensembl:ENSG00000187173|HPRD:13971|Vega:OTTHUMG00000012392 1 1q21.3 late cornified envelope 2A protein-coding LCE2A late cornified envelope 2A O late cornified envelope protein 2A|late envelope protein 9 20121230 -9606 353140 LCE2C - LEP11 HGNC:29460|MIM:612611|Ensembl:ENSG00000187180|HPRD:13972|Vega:OTTHUMG00000012389 1 1q21.3 late cornified envelope 2C protein-coding LCE2C late cornified envelope 2C O late cornified envelope protein 2C|late envelope protein 11 20121230 -9606 353141 LCE2D - LEP12|SPRL1A HGNC:16518|MIM:612612|Ensembl:ENSG00000187223|HPRD:17261|Vega:OTTHUMG00000014400 1 1q21.3 late cornified envelope 2D protein-coding LCE2D late cornified envelope 2D O late cornified envelope protein 2D|late envelope protein 12|small proline rich-like (epidermal differentiation complex) 1A|small proline-rich-like epidermal differentiation complex protein 1A 20121230 -9606 353142 LCE3A - LEP13 HGNC:29461|MIM:612613|Ensembl:ENSG00000185962|HPRD:13973|Vega:OTTHUMG00000012397 1 1q21.3 late cornified envelope 3A protein-coding LCE3A late cornified envelope 3A O late cornified envelope protein 3A|late envelope protein 13 20121230 -9606 353143 LCE3B - LEP14 HGNC:29462|MIM:612614|Ensembl:ENSG00000187238|HPRD:13974|Vega:OTTHUMG00000012395 1 1q21.3 late cornified envelope 3B protein-coding LCE3B late cornified envelope 3B O late cornified envelope protein 3B|late envelope protein 14 20121230 -9606 353144 LCE3C - LEP15|SPRL3A HGNC:16612|MIM:612615|Ensembl:ENSG00000244057|HPRD:17262|Vega:OTTHUMG00000014403 1 1q21.3 late cornified envelope 3C protein-coding LCE3C late cornified envelope 3C O late cornified envelope protein 3C|late envelope protein 15|small proline rich-like (epidermal differentiation complex) 3A|small proline-rich-like epidermal differentiation complex protein 3A 20121230 -9606 353145 LCE3E - LEP17 HGNC:29463|MIM:612617|Ensembl:ENSG00000185966|HPRD:13975|Vega:OTTHUMG00000012393 1 1q21.3 late cornified envelope 3E protein-coding LCE3E late cornified envelope 3E O late cornified envelope protein 3E|late envelope protein 17 20121230 -9606 353147 DSAP2 - - MIM:607728 15 15q25.1-q26.1 disseminated superficial actinic porokeratosis 2 unknown - - - - 20120622 -9606 353149 TBC1D26 - - HGNC:28745|Ensembl:ENSG00000214946|HPRD:14670|Vega:OTTHUMG00000059071 17 17p11.2 TBC1 domain family, member 26 protein-coding TBC1D26 TBC1 domain family, member 26 O TBC1 domain family member 26 20121230 -9606 353163 CAP2P1 - - HGNC:20142 14 14q31.3 CAP, adenylate cyclase-associated protein, 2 (yeast) pseudogene 1 pseudo CAP2P1 CAP, adenylate cyclase-associated protein, 2 (yeast) pseudogene 1 O - 20121230 -9606 353164 TAS2R42 - T2R24|T2R55|TAS2R55|hT2R55 HGNC:18888|MIM:613966|Ensembl:ENSG00000186136|HPRD:18137|Vega:OTTHUMG00000168567 12 12p13 taste receptor, type 2, member 42 protein-coding TAS2R42 taste receptor, type 2, member 42 O T2R42|candidate taste receptor hT2R55|taste receptor T2R55|taste receptor type 2 member 42|taste receptor type 2 member 55 20121230 -9606 353173 ZLS - - MIM:135500 3 3p21.2 Zimmerman-Laband Syndrome unknown - - - - 20110215 -9606 353174 ZACN - L2|LGICZ|LGICZ1|ZAC|ZAC1 HGNC:29504|MIM:610935|Ensembl:ENSG00000186919|HPRD:17271|Vega:OTTHUMG00000157186 17 17q25.3 zinc activated ligand-gated ion channel protein-coding ZACN zinc activated ligand-gated ion channel O ligand-gated ion channel subunit|ligand-gated ion channel zinc-activated 1|ligand-gated ion channel, zinc activated 1|ligand-gated ion-channel receptor L2|zinc activated ligand-gated ion channel 1|zinc-activated ligand-gated ion channel 20121230 -9606 353189 SLCO4C1 - OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 HGNC:23612|MIM:609013|Ensembl:ENSG00000173930|HPRD:12354|Vega:OTTHUMG00000162757 5 5q21.2 solute carrier organic anion transporter family, member 4C1 protein-coding SLCO4C1 solute carrier organic anion transporter family, member 4C1 O organic anion transporter M1|solute carrier family 21 member 20|solute carrier organic anion transporter family member 4C1 20121230 -9606 353194 LOC353194 - - - 17 17p11.2 keratin pseudogene pseudo - - - - 20121230 -9606 353196 KRT16P5 - - HGNC:37810 17 17p11.1 keratin 16 pseudogene 5 pseudo KRT16P5 keratin 16 pseudogene 5 O - 20121230 -9606 353219 KAAG1 - RU2AS HGNC:21031|MIM:608211|Ensembl:ENSG00000146049|HPRD:09741|Vega:OTTHUMG00000014354 6 6p22.1 kidney associated antigen 1 protein-coding KAAG1 kidney associated antigen 1 O RU2 antisense gene protein|kidney-associated antigen 1 20121230 -9606 353238 PADI6 - hPADVI HGNC:20449|MIM:610363|HPRD:15095 1 1p36.13 peptidyl arginine deiminase, type VI protein-coding PADI6 peptidyl arginine deiminase, type VI O peptidyl arginine deiminase-like protein|peptidylarginine deiminase type 6|protein-arginine deiminase type-6 20121230 -9606 353267 FAM103A2P - C6orf119|dJ427A4.2 HGNC:21234 6 6q27 family with sequence similarity 103, member A2 pseudogene pseudo FAM103A2P family with sequence similarity 103, member A2 pseudogene O - 20121230 -9606 353274 ZNF445 - ZKSCAN15|ZNF168 HGNC:21018|Ensembl:ENSG00000185219|HPRD:11719|Vega:OTTHUMG00000133042 3 3p21.32 zinc finger protein 445 protein-coding ZNF445 zinc finger protein 445 O zinc finger protein 168|zinc finger protein with KRAB and SCAN domains 15 20121230 -9606 353288 KRT26 - CK26|K25IRS2|K26|KRT25B HGNC:30840|Ensembl:ENSG00000186393|HPRD:17243|Vega:OTTHUMG00000133370 17 17q21.2 keratin 26 protein-coding KRT26 keratin 26 O CK-26|K25B|cytokeratin-26|keratin 25B|keratin, type I cytoskeletal 26|keratin-25B|keratin-26|type I inner root sheath specific keratin 25 irs2|type I inner root sheath-specific keratin-K25irs2 20121230 -9606 353293 SPG23 - - HGNC:21340|MIM:270750 1 1q24-q32 spastic paraplegia 23 (autosomal recessive) unknown SPG23 spastic paraplegia 23 (autosomal recessive) O - 20110215 -9606 353299 RGSL1 RP11-20H6.2 RGSL|RGSL2 HGNC:18636|MIM:611012|Ensembl:ENSG00000121446|HPRD:17971|Vega:OTTHUMG00000035217 1 1q25 regulator of G-protein signaling like 1 protein-coding RGSL1 regulator of G-protein signaling like 1 O regulator of G-protein signaling like 2|regulator of G-protein signaling protein-like 20121230 -9606 353322 ANKRD37 - Lrp2bp HGNC:29593|Ensembl:ENSG00000186352|HPRD:17461|Vega:OTTHUMG00000160459 4 4q35.1 ankyrin repeat domain 37 protein-coding ANKRD37 ankyrin repeat domain 37 O ankyrin repeat domain-containing protein 37|hLrp2bp|low density lipoprotein receptor-related protein binding protein|low-density lipoprotein receptor-related protein 2-binding protein 20121230 -9606 353323 KRTAP12-2 - KAP12.2|KRTAP12.2 HGNC:20530|Ensembl:ENSG00000221864|HPRD:11198|Vega:OTTHUMG00000057636 21 21q22.3 keratin associated protein 12-2 protein-coding KRTAP12-2 keratin associated protein 12-2 O high sulfur keratin-associated protein 12.2|keratin-associated protein 12-2|keratin-associated protein 12.2 20121230 -9606 353324 SPATA12 - SRG5 HGNC:23221|MIM:609869|Ensembl:ENSG00000186451|HPRD:15426|Vega:OTTHUMG00000158862 3 3p14.3 spermatogenesis associated 12 protein-coding SPATA12 spermatogenesis associated 12 O spermatogenesis-associated protein 12|spermatogenesis-related protein 5 20121230 -9606 353329 PSIP1P1 - PSIP1P HGNC:31132 9 9p22.2 PC4 and SFRS1 interacting protein 1 pseudogene 1 pseudo PSIP1P1 PC4 and SFRS1 interacting protein 1 pseudogene 1 O - 20121230 -9606 353332 KRTAP12-1 - KAP12.1|KRTAP12.1 HGNC:20529|Ensembl:ENSG00000187175|HPRD:11197|Vega:OTTHUMG00000057639 21 21q22.3 keratin associated protein 12-1 protein-coding KRTAP12-1 keratin associated protein 12-1 O high sulfur keratin-associated protein 12.1|keratin-associated protein 12-1|keratin-associated protein 12.1 20121230 -9606 353333 KRTAP10-10 - KAP10.10|KAP18.10|KRTAP18-10|KRTAP18.10 HGNC:22972|Ensembl:ENSG00000221859|HPRD:11185|Vega:OTTHUMG00000057631 21 21q22.3 keratin associated protein 10-10 protein-coding KRTAP10-10 keratin associated protein 10-10 O high sulfur keratin-associated protein 10.10|keratin-associated protein 10-10|keratin-associated protein 10.10|keratin-associated protein 18-10|keratin-associated protein 18.10 20121230 -9606 353345 GPR141 - PGR13 HGNC:19997|MIM:609045|Ensembl:ENSG00000187037|HPRD:16423 7 7p14.1 G protein-coupled receptor 141 protein-coding GPR141 G protein-coupled receptor 141 O G-protein coupled receptor PGR13|probable G-protein coupled receptor 141 20121230 -9606 353347 DFNA53 - - HGNC:21402|MIM:609965 14 14q11-q12 deafness, autosomal dominant 53 unknown DFNA53 deafness, autosomal dominant 53 O - 20120622 -9606 353355 ZNF233 - - HGNC:30946|Ensembl:ENSG00000159915|HPRD:15756|Vega:OTTHUMG00000182354 19 19q13.31 zinc finger protein 233 protein-coding ZNF233 zinc finger protein 233 O - 20121230 -9606 353376 TICAM2 - TICAM-2|TIRAP3|TIRP|TRAM HGNC:21354|MIM:608321|Ensembl:ENSG00000243414|HPRD:16313|Vega:OTTHUMG00000162905 5 5q23.1 toll-like receptor adaptor molecule 2 protein-coding TICAM2 toll-like receptor adaptor molecule 2 O NF-kappa-B-activating protein 502|TIR domain-containing adapter molecule 2|TRIF-related adaptor molecule|cytoplasmic adaptor|putative NF-kappa-B-activating protein 502|toll-like receptor adaptor protein 3|toll/interleukin-1 receptor (TIR) domain-containing adapter protein 20121230 -9606 353497 POLN RP11-317B7.1 POL4P HGNC:18870|MIM:610887|Ensembl:ENSG00000130997|HPRD:17876|Vega:OTTHUMG00000090081 4 4p16.3 polymerase (DNA directed) nu protein-coding POLN polymerase (DNA directed) nu O DNA polymerase N|DNA polymerase POL4P|DNA polymerase nu 20121230 -9606 353500 BMP8A - - HGNC:21650|Ensembl:ENSG00000183682|HPRD:16555|Vega:OTTHUMG00000008394 1 1p34.3 bone morphogenetic protein 8a protein-coding BMP8A bone morphogenetic protein 8a O BMP-8A|bone morphogenetic protein 8A 20121230 -9606 353511 PKD1P6 - HG6 HGNC:30070 16 16p13.13 polycystic kidney disease 1 (autosomal dominant) pseudogene 6 pseudo PKD1P6 polycystic kidney disease 1 (autosomal dominant) pseudogene 6 O - 20121230 -9606 353512 PKD1P4 - HG4 HGNC:30068 16 16p13.12 polycystic kidney disease 1 (autosomal dominant) pseudogene 4 pseudo PKD1P4 polycystic kidney disease 1 (autosomal dominant) pseudogene 4 O - 20121209 -9606 353513 VCY1B - BPY1B HGNC:31751|Ensembl:ENSG00000129862|HPRD:18602|Vega:OTTHUMG00000036402 Y Yq11.21 variable charge, Y-linked 1B protein-coding VCY1B variable charge, Y-linked 1B O basic charge, Y-linked 1|basic protein on Y chromosome, 1|testis-specific basic protein Y 1|testis-specific basic protein on Y, 1|variably charged protein Y 20121230 -9606 353514 LILRA5 XXbac-BCX403H19.2 CD85|CD85F|ILT-11|ILT11|LILRB7|LIR-9|LIR9 HGNC:16309|MIM:606047|Ensembl:ENSG00000187116|HPRD:06924|Vega:OTTHUMG00000065357 19 19q13.4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 protein-coding LILRA5 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 O CD85 antigen-like family member F|immunoglobulin-like transcript 11 protein|leukocyte Ig-like receptor 9|leukocyte immunoglobulin-like receptor 9|leukocyte immunoglobulin-like receptor subfamily A member 5|leukocyte immunoglobulin-like receptor subfamily A member 5 soluble|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 7 20121230 -9606 353515 XKRY2 - XKRYP7 HGNC:23922|HPRD:18603 Y Yq11.221 XK, Kell blood group complex subunit-related, Y-linked 2 protein-coding XKRY2 XK, Kell blood group complex subunit-related, Y-linked 2 O X Kell blood group precursor-related, Y-linked 2|X Kell blood group precursor-related, Y-linked pseudogene 7|testis-specific XK-related protein, Y-linked 2 20121209 -9606 359710 BPIFB3 - C20orf185|LPLUNC3|RYA3|dJ726C3.4 HGNC:16178|Ensembl:ENSG00000186190|HPRD:16644|Vega:OTTHUMG00000032234 20 20q11.21 BPI fold containing family B, member 3 protein-coding BPIFB3 BPI fold containing family B, member 3 O BPI fold-containing family B member 3|ligand-binding protein RYA3|long palate, lung and nasal epithelium carcinoma associated 3|long palate, lung and nasal epithelium carcinoma-associated protein 3 20121230 -9606 359724 RNA18SP2 - RN18S2P HGNC:37658 Y Yp11.2 RNA, 18S ribosomal pseudogene 2 pseudo RNA18SP2 RNA, 18S ribosomal pseudogene 2 O - 20121209 -9606 359729 MRP63P2 - - HGNC:29687 1 1q42.13 mitochondrial ribosomal protein 63 pseudogene 2 pseudo MRP63P2 mitochondrial ribosomal protein 63 pseudogene 2 O - 20121230 -9606 359730 MRP63P3 - - HGNC:29688 3 3p21.31 mitochondrial ribosomal protein 63 pseudogene 3 pseudo MRP63P3 mitochondrial ribosomal protein 63 pseudogene 3 O - 20121230 -9606 359731 MRP63P7 - - HGNC:29690 8 8q22.2 mitochondrial ribosomal protein 63 pseudogene 7 pseudo MRP63P7 mitochondrial ribosomal protein 63 pseudogene 7 O - 20121230 -9606 359732 MRP63P8 - - HGNC:29691 14 14q13.2 mitochondrial ribosomal protein 63 pseudogene 8 pseudo MRP63P8 mitochondrial ribosomal protein 63 pseudogene 8 O - 20121230 -9606 359733 MRP63P9 - - HGNC:29692 14 14q22.1 mitochondrial ribosomal protein 63 pseudogene 9 pseudo MRP63P9 mitochondrial ribosomal protein 63 pseudogene 9 O - 20121230 -9606 359734 MRPL11P3 - - HGNC:29695 12 12q21.2 mitochondrial ribosomal protein L11 pseudogene 3 pseudo MRPL11P3 mitochondrial ribosomal protein L11 pseudogene 3 O - 20121230 -9606 359735 MRPL14P1 - - HGNC:29696 17 17p13.3 mitochondrial ribosomal protein L14 pseudogene 1 pseudo MRPL14P1 mitochondrial ribosomal protein L14 pseudogene 1 O - 20121230 -9606 359736 MRPL15P1 - MRPL15P2 HGNC:29697 15 15q26.1 mitochondrial ribosomal protein L15 pseudogene 1 pseudo MRPL15P1 mitochondrial ribosomal protein L15 pseudogene 1 O - 20121230 -9606 359737 MRPL20P1 - - HGNC:29699 21 21q22.2 mitochondrial ribosomal protein L20 pseudogene 1 pseudo MRPL20P1 mitochondrial ribosomal protein L20 pseudogene 1 O - 20121230 -9606 359738 MRPL22P1 - - HGNC:29700 4 4q12 mitochondrial ribosomal protein L22 pseudogene 1 pseudo MRPL22P1 mitochondrial ribosomal protein L22 pseudogene 1 O - 20121230 -9606 359739 MRPL3P1 - - HGNC:29701 13 13q12.11 mitochondrial ribosomal protein L3 pseudogene 1 pseudo MRPL3P1 mitochondrial ribosomal protein L3 pseudogene 1 O - 20121230 -9606 359740 MRPL30P1 - - HGNC:29702 6 6p12.1 mitochondrial ribosomal protein L30 pseudogene 1 pseudo MRPL30P1 mitochondrial ribosomal protein L30 pseudogene 1 O - 20121230 -9606 359741 MRPL32P1 - - HGNC:29704 X Xp11.23 mitochondrial ribosomal protein L32 pseudogene 1 pseudo MRPL32P1 mitochondrial ribosomal protein L32 pseudogene 1 O - 20121230 -9606 359742 MRPL35P1 - - HGNC:29705 6 6q23 mitochondrial ribosomal protein L35 pseudogene 1 pseudo MRPL35P1 mitochondrial ribosomal protein L35 pseudogene 1 O - 20121230 -9606 359743 MRPL35P2 - - HGNC:29706 10 10q21.3 mitochondrial ribosomal protein L35 pseudogene 2 pseudo MRPL35P2 mitochondrial ribosomal protein L35 pseudogene 2 O - 20121230 -9606 359744 MRPL35P3 - - HGNC:23731 10 10q22.2 mitochondrial ribosomal protein L35 pseudogene 3 pseudo MRPL35P3 mitochondrial ribosomal protein L35 pseudogene 3 O - 20121230 -9606 359745 MRPL35P4 - - HGNC:29707 X Xp22.31 mitochondrial ribosomal protein L35 pseudogene 4 pseudo MRPL35P4 mitochondrial ribosomal protein L35 pseudogene 4 O - 20121230 -9606 359746 MRPL42P3 - - HGNC:29712 6 6q24.2 mitochondrial ribosomal protein L42 pseudogene 3 pseudo MRPL42P3 mitochondrial ribosomal protein L42 pseudogene 3 O - 20121230 -9606 359747 MRPL45P1 - - HGNC:29715 2 2p11.2 mitochondrial ribosomal protein L45 pseudogene 1 pseudo MRPL45P1 mitochondrial ribosomal protein L45 pseudogene 1 O - 20121230 -9606 359748 MRPL49P1 - - HGNC:29717 5 5q12.1 mitochondrial ribosomal protein L49 pseudogene 1 pseudo MRPL49P1 mitochondrial ribosomal protein L49 pseudogene 1 O - 20121230 -9606 359749 MRPL50P2 - - HGNC:29720 2 2q34 mitochondrial ribosomal protein L50 pseudogene 2 pseudo MRPL50P2 mitochondrial ribosomal protein L50 pseudogene 2 O - 20121230 -9606 359750 MRPL50P3 - - HGNC:29721 5 5p12 mitochondrial ribosomal protein L50 pseudogene 3 pseudo MRPL50P3 mitochondrial ribosomal protein L50 pseudogene 3 O - 20121230 -9606 359751 MRPL50P4 - - HGNC:29722 10 10q23.1 mitochondrial ribosomal protein L50 pseudogene 4 pseudo MRPL50P4 mitochondrial ribosomal protein L50 pseudogene 4 O - 20121230 -9606 359752 MRPL53P1 - - HGNC:29725 1 1p13.2 mitochondrial ribosomal protein L53 pseudogene 1 pseudo MRPL53P1 mitochondrial ribosomal protein L53 pseudogene 1 O - 20121230 -9606 359753 MRPS10P1 - - HGNC:29728 1 1q23.2 mitochondrial ribosomal protein S10 pseudogene 1 pseudo MRPS10P1 mitochondrial ribosomal protein S10 pseudogene 1 O - 20121230 -9606 359754 MRPS10P5 - - HGNC:29729 9 9p12 mitochondrial ribosomal protein S10 pseudogene 5 pseudo MRPS10P5 mitochondrial ribosomal protein S10 pseudogene 5 O - 20121230 -9606 359755 MRPS15P1 - - HGNC:29730 15 15q22 mitochondrial ribosomal protein S15 pseudogene 1 pseudo MRPS15P1 mitochondrial ribosomal protein S15 pseudogene 1 O - 20121230 -9606 359756 MRPS15P2 - - HGNC:29731 19 19q13.32 mitochondrial ribosomal protein S15 pseudogene 2 pseudo MRPS15P2 mitochondrial ribosomal protein S15 pseudogene 2 O - 20121230 -9606 359757 MRPS17P3 - - HGNC:29736 3 3p12.1 mitochondrial ribosomal protein S17 pseudogene 3 pseudo MRPS17P3 mitochondrial ribosomal protein S17 pseudogene 3 O - 20121230 -9606 359758 MRPS17P5 - - HGNC:29737 6 6q22.33 mitochondrial ribosomal protein S17 pseudogene 5 pseudo MRPS17P5 mitochondrial ribosomal protein S17 pseudogene 5 O - 20121230 -9606 359759 MRPS17P6 - - HGNC:29738 14 14p11 mitochondrial ribosomal protein S17 pseudogene 6 pseudo MRPS17P6 mitochondrial ribosomal protein S17 pseudogene 6 O - 20121230 -9606 359760 MRPS17P9 - - HGNC:29739 X Xq24 mitochondrial ribosomal protein S17 pseudogene 9 pseudo MRPS17P9 mitochondrial ribosomal protein S17 pseudogene 9 O - 20121230 -9606 359761 MRPS18AP1 - - HGNC:29740 3 3p21.31 mitochondrial ribosomal protein S18A pseudogene 1 pseudo MRPS18AP1 mitochondrial ribosomal protein S18A pseudogene 1 O - 20121230 -9606 359762 MRPS18BP1 - - HGNC:29741 1 1q41 mitochondrial ribosomal protein S18B pseudogene 1 pseudo MRPS18BP1 mitochondrial ribosomal protein S18B pseudogene 1 O - 20121230 -9606 359763 MRPS18BP2 - - HGNC:29742 2 2q22.1 mitochondrial ribosomal protein S18B pseudogene 2 pseudo MRPS18BP2 mitochondrial ribosomal protein S18B pseudogene 2 O - 20121230 -9606 359764 MRPS18CP3 - - HGNC:29744 8 8p21.3 mitochondrial ribosomal protein S18C pseudogene 3 pseudo MRPS18CP3 mitochondrial ribosomal protein S18C pseudogene 3 O - 20121230 -9606 359765 MRPS18CP5 - - HGNC:29746 15 15q11.2 mitochondrial ribosomal protein S18C pseudogene 5 pseudo MRPS18CP5 mitochondrial ribosomal protein S18C pseudogene 5 O - 20121230 -9606 359766 MRPS21P2 - - HGNC:29749 1 1q22 mitochondrial ribosomal protein S21 pseudogene 2 pseudo MRPS21P2 mitochondrial ribosomal protein S21 pseudogene 2 O - 20121230 -9606 359767 MRPS21P3 - - HGNC:29750 1 1q31.2 mitochondrial ribosomal protein S21 pseudogene 3 pseudo MRPS21P3 mitochondrial ribosomal protein S21 pseudogene 3 O - 20121230 -9606 359768 MRPS21P4 - - HGNC:29751 9 9p13.1 mitochondrial ribosomal protein S21 pseudogene 4 pseudo MRPS21P4 mitochondrial ribosomal protein S21 pseudogene 4 O - 20121230 -9606 359769 MRPS21P5 - - HGNC:29752 10 10p12.1 mitochondrial ribosomal protein S21 pseudogene 5 pseudo MRPS21P5 mitochondrial ribosomal protein S21 pseudogene 5 O - 20121230 -9606 359770 MRPS21P6 - - HGNC:29753 10 10q26 mitochondrial ribosomal protein S21 pseudogene 6 pseudo MRPS21P6 mitochondrial ribosomal protein S21 pseudogene 6 O - 20121230 -9606 359771 MRPS21P7 - - HGNC:29754 16 16q12.1 mitochondrial ribosomal protein S21 pseudogene 7 pseudo MRPS21P7 mitochondrial ribosomal protein S21 pseudogene 7 O - 20121230 -9606 359772 MRPS21P9 - - HGNC:29756 17 17q21 mitochondrial ribosomal protein S21 pseudogene 9 pseudo MRPS21P9 mitochondrial ribosomal protein S21 pseudogene 9 O - 20121230 -9606 359773 MRPS22P1 - - HGNC:29757 X Xq21.31 mitochondrial ribosomal protein S22 pseudogene 1 pseudo MRPS22P1 mitochondrial ribosomal protein S22 pseudogene 1 O - 20121230 -9606 359774 DAP3P2 - MRPS29P2 HGNC:29762 2 2q31.2 death associated protein 3 pseudogene 2 pseudo DAP3P2 death associated protein 3 pseudogene 2 O - 20121230 -9606 359775 MRPS33P2 - - HGNC:29765 4 4p14 mitochondrial ribosomal protein S33 pseudogene 2 pseudo MRPS33P2 mitochondrial ribosomal protein S33 pseudogene 2 O - 20121230 -9606 359776 MRPS33P3 - - HGNC:29766 4 4q26 mitochondrial ribosomal protein S33 pseudogene 3 pseudo MRPS33P3 mitochondrial ribosomal protein S33 pseudogene 3 O - 20121230 -9606 359777 MRPS33P4 - - HGNC:29767 20 20q13.13 mitochondrial ribosomal protein S33 pseudogene 4 pseudo MRPS33P4 mitochondrial ribosomal protein S33 pseudogene 4 O - 20121230 -9606 359778 MRPS35P2 - - HGNC:29769 5 5q15 mitochondrial ribosomal protein S35 pseudogene 2 pseudo MRPS35P2 mitochondrial ribosomal protein S35 pseudogene 2 O - 20121230 -9606 359779 MRPS35P3 - - HGNC:29770 10 10q21 mitochondrial ribosomal protein S35 pseudogene 3 pseudo MRPS35P3 mitochondrial ribosomal protein S35 pseudogene 3 O - 20121230 -9606 359780 MRPS6P1 - MRPS6P3 HGNC:29780 1 1p35 mitochondrial ribosomal protein S6 pseudogene 1 pseudo MRPS6P1 mitochondrial ribosomal protein S6 pseudogene 1 O - 20121230 -9606 359781 MRPS6P2 - - HGNC:29781 1 1p33 mitochondrial ribosomal protein S6 pseudogene 2 pseudo MRPS6P2 mitochondrial ribosomal protein S6 pseudogene 2 O - 20121230 -9606 359782 MRPS6P4 - - HGNC:29782 12 12q21 mitochondrial ribosomal protein S6 pseudogene 4 pseudo MRPS6P4 mitochondrial ribosomal protein S6 pseudogene 4 O - 20121230 -9606 359783 MRPS7P1 - - HGNC:29783 8 8p11.22 mitochondrial ribosomal protein S7 pseudogene 1 pseudo MRPS7P1 mitochondrial ribosomal protein S7 pseudogene 1 O - 20121230 -9606 359787 DPPA3 - STELLA HGNC:19199|MIM:608408|Ensembl:ENSG00000187569|HPRD:16331|Vega:OTTHUMG00000168434 12 12p13.31 developmental pluripotency associated 3 protein-coding DPPA3 developmental pluripotency associated 3 O developmental pluripotency-associated protein 3|stella-related protein 20121230 -9606 359791 MED14P1 - CRSP2P|CXorf4P|MED14P HGNC:2371 Y Yq11.1 mediator complex subunit 14 pseudogene 1 pseudo MED14P1 mediator complex subunit 14 pseudogene 1 O - 20121230 -9606 359792 EIF4A1P2 - - HGNC:23946 Y Yp11.2 eukaryotic translation initiation factor 4A1 pseudogene 2 pseudo EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 O - 20121230 -9606 359793 AGKP1 - AGKY1 HGNC:37661 Y Yq11.21 acylglycerol kinase pseudogene 1 pseudo AGKP1 acylglycerol kinase pseudogene 1 O - 20121230 -9606 359794 TUSC2P1 - TUSC2P HGNC:23963 Y Yp11.2 tumor suppressor candidate 2 pseudogene 1 pseudo TUSC2P1 tumor suppressor candidate 2 pseudogene 1 O - 20121230 -9606 359795 NEFLP1 - - HGNC:37662 Y Yq11.2 neurofilament, light polypeptide pseudogene 1 pseudo NEFLP1 neurofilament, light polypeptide pseudogene 1 O - 20121230 -9606 359796 KDM5DP1 - SMCYP HGNC:23976 Y Yq11.221 lysine (K)-specific demethylase 5D pseudogene 1 pseudo KDM5DP1 lysine (K)-specific demethylase 5D pseudogene 1 O - 20121230 -9606 359797 MRPS5P4 - - HGNC:29779 18 18q21 mitochondrial ribosomal protein S5 pseudogene 4 pseudo MRPS5P4 mitochondrial ribosomal protein S5 pseudogene 4 O - 20121230 -9606 359798 UBE2V1P3 - - HGNC:23983 Y Yp11.2 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 3 pseudo UBE2V1P3 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 3 O - 20121230 -9606 359799 USP12PY - USP12P3 HGNC:23195 Y Yp11.2 ubiquitin specific peptidase 12 pseudogene, Y-linked pseudo USP12PY ubiquitin specific peptidase 12 pseudogene, Y-linked O - 20121230 -9606 359800 VDAC1P6 - - HGNC:37481 Y Yp11.2 voltage-dependent anion channel 1 pseudogene 6 pseudo VDAC1P6 voltage-dependent anion channel 1 pseudogene 6 O - 20121230 -9606 359802 MRPS10P2 - MRPS10P3|MRPS10P4 HGNC:29727 3 3p26 mitochondrial ribosomal protein S10 pseudogene 2 pseudo MRPS10P2 mitochondrial ribosomal protein S10 pseudogene 2 O - 20121230 -9606 359803 MRPS17P1 - MRPS17P2 HGNC:29734 1 1p34 mitochondrial ribosomal protein S17 pseudogene 1 pseudo MRPS17P1 mitochondrial ribosomal protein S17 pseudogene 1 O - 20121230 -9606 359804 DAP3P1 - DAP3P|MRPS29P1 HGNC:17624 1 1q21.3 death associated protein 3 pseudogene 1 pseudo DAP3P1 death associated protein 3 pseudogene 1 O - 20121230 -9606 359805 PCNAP2 - pF2PCNA HGNC:8733 4 4q24 proliferating cell nuclear antigen pseudogene 2 pseudo PCNAP2 proliferating cell nuclear antigen pseudogene 2 O - 20121230 -9606 359806 PCNAP1 - p1PCNA HGNC:8732 4 4q24 proliferating cell nuclear antigen pseudogene 1 pseudo PCNAP1 proliferating cell nuclear antigen pseudogene 1 O - 20121230 -9606 359817 MRPL30P2 - MRPL30P3 HGNC:29703 12 12p11.2 mitochondrial ribosomal protein L30 pseudogene 2 pseudo MRPL30P2 mitochondrial ribosomal protein L30 pseudogene 2 O - 20121230 -9606 359819 LOC359819 - - - 5 5q12.3 mitochondrial ribosomal protein L39 pseudogene pseudo - - - - 20121230 -9606 359821 MRPL42P5 - - HGNC:29714 15 15q13.3 mitochondrial ribosomal protein L42 pseudogene 5 pseudo MRPL42P5 mitochondrial ribosomal protein L42 pseudogene 5 O - 20121230 -9606 359822 KCNIP4-IT1 - NCRNA00099|UM9(5)|UM9-5 HGNC:29895 4 4p15.2 KCNIP4 intronic transcript 1 (non-protein coding) miscRNA KCNIP4-IT1 KCNIP4 intronic transcript 1 (non-protein coding) O - 20121230 -9606 359825 PSORS9 - - HGNC:31013|MIM:607857 4 4q31-q34 psoriasis susceptibility 9 unknown PSORS9 psoriasis susceptibility 9 O - 20120622 -9606 359844 PRDX2P1 - - HGNC:30020 13 13p12 peroxiredoxin 2 pseudogene 1 pseudo PRDX2P1 peroxiredoxin 2 pseudogene 1 O - 20121230 -9606 359845 FAM101B - - HGNC:28705|Ensembl:ENSG00000183688|HPRD:14646|Vega:OTTHUMG00000132483 17 17p13 family with sequence similarity 101, member B protein-coding FAM101B family with sequence similarity 101, member B O protein FAM101B 20121230 -9606 359940 CDK8PS - - HGNC:18995 2 2p25.1 cyclin-dependent kinase 8 pseudogene pseudo CDK8PS cyclin-dependent kinase 8 pseudogene O - 20090331 -9606 359941 CDK4PS - - HGNC:19040 1 1p21.1 cyclin-dependent kinase 4 pseudogene pseudo CDK4PS cyclin-dependent kinase 4 pseudogene O - 20121230 -9606 359948 IRF2BP2 - - HGNC:21729|Ensembl:ENSG00000168264|HPRD:17160|Vega:OTTHUMG00000037981 1 1q42.3 interferon regulatory factor 2 binding protein 2 protein-coding IRF2BP2 interferon regulatory factor 2 binding protein 2 O IRF-2-binding protein 2|interferon regulatory factor 2-binding protein 2 20121230 -9606 359996 SERBP1P2 - - HGNC:23967 Y Yp11.2 SERPINE1 mRNA binding protein 1 pseudogene 2 pseudo SERBP1P2 SERPINE1 mRNA binding protein 1 pseudogene 2 O - 20121230 -9606 359997 ATP5JP1 - - HGNC:23933 Y Yp11.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 pseudogene 1 pseudo ATP5JP1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 pseudogene 1 O - 20121230 -9606 359998 CHRFAM7AP2 - - HGNC:23937 Y Yq11.2 CHRFAM7A pseudogene 2 pseudo CHRFAM7AP2 CHRFAM7A pseudogene 2 O - 20121209 -9606 359999 CHRFAM7AP1 - - HGNC:37766 Y Yq11.2 CHRFAM7A pseudogene 1 pseudo CHRFAM7AP1 CHRFAM7A pseudogene 1 O - 20121209 -9606 360001 IFNWP18 - LEIF-M HGNC:5450 9 9p22 interferon, omega 1 pseudogene 18 pseudo IFNWP18 interferon, omega 1 pseudogene 18 O - 20121230 -9606 360002 TAF9P1 - - HGNC:31743 Y Yq11.221 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 1 pseudo TAF9P1 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 1 O - 20121209 -9606 360003 TAF9P2 - - HGNC:31744 Y Yq11.221 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 2 pseudo TAF9P2 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 2 O - 20121209 -9606 360008 GAPDHP17 - GAPDHP18 HGNC:37765 Y Yq11.221 glyceraldehyde-3-phosphate dehydrogenase pseudogene 17 pseudo GAPDHP17 glyceraldehyde-3-phosphate dehydrogenase pseudogene 17 O - 20121230 -9606 360009 CYCSP49 - CYCSP54|HCP49 HGNC:23943 Y Yq11.223 cytochrome c, somatic pseudogene 49 pseudo CYCSP49 cytochrome c, somatic pseudogene 49 O - 20121230 -9606 360014 DLGAP5P1 - - HGNC:23945 Y Yp11.2 discs, large (Drosophila) homolog-associated protein 5 pseudogene 1 pseudo DLGAP5P1 discs, large (Drosophila) homolog-associated protein 5 pseudogene 1 O - 20121209 -9606 360015 RFTN1P1 - - HGNC:23971 Y Yp11.2 raftlin, lipid raft linker 1 pseudogene 1 pseudo RFTN1P1 raftlin, lipid raft linker 1 pseudogene 1 O - 20121230 -9606 360016 CICP2 - - HGNC:23935 Y Yq11.223 capicua homolog (Drosophila) pseudogene 2 pseudo CICP2 capicua homolog (Drosophila) pseudogene 2 O - 20121209 -9606 360017 CICP1 - - HGNC:23936 Y Yq11.223 capicua homolog (Drosophila) pseudogene 1 pseudo CICP1 capicua homolog (Drosophila) pseudogene 1 O - 20121209 -9606 360018 PRRC2CP1 - BAT2D1P1|BAT2L2P1 HGNC:23949 Y Yp11.2 proline-rich coiled-coil 2C pseudogene 1 pseudo PRRC2CP1 proline-rich coiled-coil 2C pseudogene 1 O - 20121230 -9606 360019 KRT18P10 - - HGNC:23962 Y Yp11.2 keratin 18 pseudogene 10 pseudo KRT18P10 keratin 18 pseudogene 10 O - 20121209 -9606 360020 PPP1R12BP2 - - HGNC:23970 Y Yq11.223 protein phosphatase 1, regulatory subunit 12B Y-linked pseudogene 2 pseudo PPP1R12BP2 protein phosphatase 1, regulatory subunit 12B Y-linked pseudogene 2 O - 20121209 -9606 360021 PPP1R12BP1 - PPP1R12BP|PPP1R12BPY1 HGNC:18498 Y Yq11.23 protein phosphatase 1, regulatory subunit 12B pseudogene, Y-linked 1 pseudo PPP1R12BP1 protein phosphatase 1, regulatory subunit 12B pseudogene, Y-linked 1 O - 20121209 -9606 360022 PSIP1P2 - - HGNC:23968 Y Yq11 PC4 and SFRS1 interacting protein 1 pseudogene 2 pseudo PSIP1P2 PC4 and SFRS1 interacting protein 1 pseudogene 2 O - 20121230 -9606 360023 ZBTB41 - FRBZ1|RP11-469L3.1|ZNF924 HGNC:24819|Ensembl:ENSG00000177888|HPRD:17017|Vega:OTTHUMG00000036275 1 1q31.3 zinc finger and BTB domain containing 41 protein-coding ZBTB41 zinc finger and BTB domain containing 41 O FRBZ1 protein (FRBZ1)|zinc finger and BTB domain-containing protein 41 20121230 -9606 360024 GOLGA6L11P - GOLGA6L15P HGNC:23958 Y Yq11.23 golgin A6 family-like 11, pseudogene pseudo GOLGA6L11P golgin A6 family-like 11, pseudogene O - 20121209 -9606 360025 GOLGA6L12P - - HGNC:23959 Y Yq11.223 golgin A6 family-like 12, pseudogene pseudo GOLGA6L12P golgin A6 family-like 12, pseudogene O - 20121209 -9606 360026 GOLGA6L13P - - HGNC:23960 Y Yq11.223 golgin A6 family-like 13, pseudogene pseudo GOLGA6L13P golgin A6 family-like 13, pseudogene O - 20121209 -9606 360027 GOLGA6L14P - - HGNC:23961 Y Yq11.223 golgin A6 family-like 14, pseudogene pseudo GOLGA6L14P golgin A6 family-like 14, pseudogene O - 20121209 -9606 360028 TMEM167AP1 - - HGNC:23956 Y Yq11.222 transmembrane protein 167A pseudogene 1 pseudo TMEM167AP1 transmembrane protein 167A pseudogene 1 O - 20121230 -9606 360029 FAM199YP - FAM199Y HGNC:23951 Y Yp11.2 family with sequence similarity 199, Y-linked, pseudogene pseudo FAM199YP family with sequence similarity 199, Y-linked, pseudogene O - 20121209 -9606 360030 NANOGNB - - HGNC:24958|Ensembl:ENSG00000205857|Vega:OTTHUMG00000165107 12 12p13.31 NANOG neighbor homeobox protein-coding NANOGNB NANOG neighbor homeobox O homeobox C14|homeobox protein C14 20121230 -9606 360132 FKBP9L - - HGNC:23568|HPRD:16900 7 7p11.1 FK506 binding protein 9-like pseudo FKBP9L FK506 binding protein 9-like O - 20121230 -9606 360155 CYCSP52 - HC6|HCP2 HGNC:24393 1 1q22 cytochrome c, somatic pseudogene 52 pseudo CYCSP52 cytochrome c, somatic pseudogene 52 O - 20121230 -9606 360156 CYCSP53 - HCP3 HGNC:24404 1 1q23.3 cytochrome c, somatic pseudogene 53 pseudo CYCSP53 cytochrome c, somatic pseudogene 53 O - 20121230 -9606 360157 CYCSP4 - HCP4 HGNC:24413 1 1q32.1 cytochrome c, somatic pseudogene 4 pseudo CYCSP4 cytochrome c, somatic pseudogene 4 O - 20121230 -9606 360158 CYCSP5 - HCP5 HGNC:24416 1 1q44 cytochrome c, somatic pseudogene 5 pseudo CYCSP5 cytochrome c, somatic pseudogene 5 O - 20121230 -9606 360159 CYCSP6 - HCP6 HGNC:24421 2 2p12 cytochrome c, somatic pseudogene 6 pseudo CYCSP6 cytochrome c, somatic pseudogene 6 O - 20121230 -9606 360160 CYCSP8 - HCP8 HGNC:24423 2 2q21.1 cytochrome c, somatic pseudogene 8 pseudo CYCSP8 cytochrome c, somatic pseudogene 8 O - 20121230 -9606 360163 CYCTP - HCP9 HGNC:24424 2 2q31.2 cytochrome c, testis, pseudogene pseudo CYCTP cytochrome c, testis, pseudogene O - 20121230 -9606 360165 NDUFA4P1 - NDUFA4 HGNC:29835 1 1p13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa, pseudogene 1 pseudo NDUFA4P1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa, pseudogene 1 O - 20121230 -9606 360166 CYCSP10 - HCP10 HGNC:24384 3 3p25.3 cytochrome c, somatic pseudogene 10 pseudo CYCSP10 cytochrome c, somatic pseudogene 10 O - 20121230 -9606 360167 CYCSP11 - HCP11 HGNC:24385 3 3p25.3 cytochrome c, somatic pseudogene 11 pseudo CYCSP11 cytochrome c, somatic pseudogene 11 O - 20121230 -9606 360168 CYCSP12 - CYCSP13|HCP12|HCP13 HGNC:24386 3 3p25.2 cytochrome c, somatic pseudogene 12 pseudo CYCSP12 cytochrome c, somatic pseudogene 12 O - 20121230 -9606 360170 CYCSP14 - HCP14 HGNC:24388 4 4q28.2 cytochrome c, somatic pseudogene 14 pseudo CYCSP14 cytochrome c, somatic pseudogene 14 O - 20121230 -9606 360171 CYCSP16 - HCP16 HGNC:24389 6 6q15 cytochrome c, somatic pseudogene 16 pseudo CYCSP16 cytochrome c, somatic pseudogene 16 O - 20121230 -9606 360172 CYCSP17 - HCP17 HGNC:24390 6 6q16.1 cytochrome c, somatic pseudogene 17 pseudo CYCSP17 cytochrome c, somatic pseudogene 17 O - 20121230 -9606 360173 CYCSP18 - HCP18 HGNC:24391 7 7q21.3 cytochrome c, somatic pseudogene 18 pseudo CYCSP18 cytochrome c, somatic pseudogene 18 O - 20121230 -9606 360174 CYCSP19 - HCP19 HGNC:24392 7 7q31.32 cytochrome c, somatic pseudogene 19 pseudo CYCSP19 cytochrome c, somatic pseudogene 19 O - 20121230 -9606 360175 CYCSP22 - HCP22 HGNC:24396 8 8q11.22 cytochrome c, somatic pseudogene 22 pseudo CYCSP22 cytochrome c, somatic pseudogene 22 O - 20121230 -9606 360176 CYCSP23 - HCP23 HGNC:24397 8 8q24.12 cytochrome c, somatic pseudogene 23 pseudo CYCSP23 cytochrome c, somatic pseudogene 23 O - 20121230 -9606 360177 CYCSP24 - HC3|HCP24|HCP31 HGNC:24398 9 9q22.32 cytochrome c, somatic pseudogene 24 pseudo CYCSP24 cytochrome c, somatic pseudogene 24 O - 20121230 -9606 360178 CYCSP26 - HCP26 HGNC:24400 11 11q12.1 cytochrome c, somatic pseudogene 26 pseudo CYCSP26 cytochrome c, somatic pseudogene 26 O - 20121230 -9606 360179 CYCSP28 - HCP28 HGNC:24402 11 11q14.1 cytochrome c, somatic pseudogene 28 pseudo CYCSP28 cytochrome c, somatic pseudogene 28 O - 20121230 -9606 360180 CYCSP29 - HCP29 HGNC:24403 11 11q22.3 cytochrome c, somatic pseudogene 29 pseudo CYCSP29 cytochrome c, somatic pseudogene 29 O - 20121230 -9606 360181 CYCSP32 - HCP32 HGNC:24406 13 13q12.11 cytochrome c, somatic pseudogene 32 pseudo CYCSP32 cytochrome c, somatic pseudogene 32 O - 20121230 -9606 360182 CYCSP34 - HCP34 HGNC:24408 13 13q14.11 cytochrome c, somatic pseudogene 34 pseudo CYCSP34 cytochrome c, somatic pseudogene 34 O - 20121230 -9606 360183 CYCSP2 - HCP37 HGNC:24410 15 15q15.1 cytochrome c, somatic pseudogene 2 pseudo CYCSP2 cytochrome c, somatic pseudogene 2 O - 20121230 -9606 360184 CYCSP38 - HC2|HCP38 HGNC:24411 15 15q21.3 cytochrome c, somatic pseudogene 38 pseudo CYCSP38 cytochrome c, somatic pseudogene 38 O - 20121230 -9606 360185 CYCSP40 - HC7|HCP40 HGNC:24414 17 17q25.3 cytochrome c, somatic pseudogene 40 pseudo CYCSP40 cytochrome c, somatic pseudogene 40 O - 20121230 -9606 360186 CYCSP41 - CYC1LP4|HCP41 HGNC:2580 21 21p11 cytochrome c, somatic pseudogene 41 pseudo CYCSP41 cytochrome c, somatic pseudogene 41 O - 20121230 -9606 360187 CYCSP43 - HCP43 HGNC:24417 X Xq13.1 cytochrome c, somatic pseudogene 43 pseudo CYCSP43 cytochrome c, somatic pseudogene 43 O - 20121230 -9606 360188 CYCSP48 - HCP48 HGNC:23942 Y Yq11.223 cytochrome c, somatic pseudogene 48 pseudo CYCSP48 cytochrome c, somatic pseudogene 48 O - 20121230 -9606 360200 TMPRSS9 - - HGNC:30079|MIM:610477|Ensembl:ENSG00000178297|HPRD:07124|Vega:OTTHUMG00000180431 19 19p13.3 transmembrane protease, serine 9 protein-coding TMPRSS9 transmembrane protease, serine 9 O polyserase 1|polyserase-1|polyserase-I|polyserine protease 1|transmembrane protease serine 9|transmembrane serine protease 9 20121230 -9606 360203 GLT6D1 RP11-98L5.1 GLTDC1|GT6M7 HGNC:23671|MIM:613699|Ensembl:ENSG00000204007|HPRD:13584|Vega:OTTHUMG00000020911 9 9q34.3 glycosyltransferase 6 domain containing 1 protein-coding GLT6D1 glycosyltransferase 6 domain containing 1 O galactosyltransferase family 6 domain containing 1|galactosyltransferase family 6 domain-containing 1|glycosyltransferase 6 domain-containing protein 1 20121230 -9606 360205 HOXB-AS5 - C17orf93|HOXB13-AS1|NCRNA00253|PRAC2 HGNC:30143|MIM:610787 17 17q21.3 HOXB cluster antisense RNA 5 miscRNA HOXB-AS5 HOXB cluster antisense RNA 5 O - 20121230 -9606 360219 GCRG224 - - MIM:610888 11 11q13-q14 GCRG-P224 unknown - - - - 20120508 -9606 360226 PRSS41 - TESSP1 HGNC:30715|HPRD:15488 16 16p13.3 protease, serine, 41 protein-coding PRSS41 protease, serine, 41 O putative serine protease 41|testis-specific serine protease 1 20121230 -9606 360227 HIN1L - - - 12 12p13.32 OTU domain containing 4 pseudogene pseudo - - - - 20121230 -9606 373071 AIS1 - - HGNC:16304|MIM:607836 1 1p31 autoimmune susceptibility 1 unknown AIS1 autoimmune susceptibility 1 O - 20120622 -9606 373073 CLAM - PCH3 HGNC:20394|MIM:608027 7 7q11-q21 cerebellar atrophy with progressive microcephaly unknown CLAM cerebellar atrophy with progressive microcephaly O - 20121209 -9606 373156 GSTK1 HDCMD47P GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1 HGNC:16906|MIM:602321|Ensembl:ENSG00000197448|Vega:OTTHUMG00000152637 7 7q34 glutathione S-transferase kappa 1 protein-coding GSTK1 glutathione S-transferase kappa 1 O GST class-kappa|glutathione S-transferase k1|glutathione S-transferase subunit 13 homolog 20121230 -9606 373159 STK19P - RP2|bPG116M5.10 HGNC:21668 6 6p21.3 serine/threonine kinase 19 pseudogene pseudo STK19P serine/threonine kinase 19 pseudogene O - 20121230 -9606 373509 USP50 - - HGNC:20079|Ensembl:ENSG00000170236|HPRD:15639|Vega:OTTHUMG00000167591 15 15q21.1 ubiquitin specific peptidase 50 protein-coding USP50 ubiquitin specific peptidase 50 O inactive ubiquitin carboxyl-terminal hydrolase 50|inactive ubiquitin-specific peptidase 50|ubiquitin specific protease 50 20121230 -9606 373856 USP41 - - HGNC:20070|Ensembl:ENSG00000161133|Vega:OTTHUMG00000151317 22 22q11.21 ubiquitin specific peptidase 41 protein-coding USP41 ubiquitin specific peptidase 41 O deubiquitinating enzyme 41|putative ubiquitin carboxyl-terminal hydrolase 41|ubiquitin specific protease 41|ubiquitin specific proteinase 41|ubiquitin thioesterase 41|ubiquitin thiolesterase 41|ubiquitin-specific-processing protease 41 20121230 -9606 373861 HILS1 - - HGNC:30616|MIM:608101|HPRD:12164 17 17q21.33 histone linker H1 domain, spermatid-specific 1, pseudogene pseudo HILS1 histone linker H1 domain, spermatid-specific 1, pseudogene O - 20121230 -9606 373863 DND1 - RBMS4 HGNC:23799|MIM:609385|Ensembl:ENSG00000256453|HPRD:13240|Vega:OTTHUMG00000129499 5 5q31.3 dead end homolog 1 (zebrafish) protein-coding DND1 dead end homolog 1 (zebrafish) O RNA-binding motif, single-stranded-interacting protein 4|dead end protein homolog 1 20121230 -9606 374286 CDRT1 - C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2 HGNC:14379|MIM:604596|Ensembl:ENSG00000241322|HPRD:16699|Vega:OTTHUMG00000059074 17 17p12 CMT1A duplicated region transcript 1 protein-coding CDRT1 CMT1A duplicated region transcript 1 O CMT1A duplicated region transcript 1 protein|Charcot-Marie-Tooth duplicated region transcript 1|F-box and WD repeat domain containing 10 pseudogene 1|F-box and WD-40 domain protein 10 pseudogene 1 20121230 -9606 374291 NDUFS7 - CI-20|CI-20KD|MY017|PSST HGNC:7714|MIM:601825|Ensembl:ENSG00000115286|HPRD:03491|Vega:OTTHUMG00000168077 19 19p13.3 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) protein-coding NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) O NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial|NADH-coenzyme Q reductase|NADH-ubiquinone oxidoreductase 20 kDa subunit|NADH:ubiquinone oxidoreductase PSST subunit|PSST subunit|complex I 20kDa subunit|complex I, mitochondrial respiratory chain, 20-KD subunit|complex I-20kD 20121230 -9606 374308 PTCHD3 - PTR HGNC:24776|MIM:611791|Ensembl:ENSG00000182077|Vega:OTTHUMG00000017860 10 10p12.1 patched domain containing 3 protein-coding PTCHD3 patched domain containing 3 O patched domain-containing protein 3|patched-related protein 20121230 -9606 374354 NHLRC2 - - HGNC:24731|Ensembl:ENSG00000196865|HPRD:14827|Vega:OTTHUMG00000019078 10 10q25.3 NHL repeat containing 2 protein-coding NHLRC2 NHL repeat containing 2 O 1200003G01Rik|NHL repeat-containing protein 2|novel NHL repeat domain containing protein 20121230 -9606 374355 CCDC172 - C10orf96 HGNC:30524|Ensembl:ENSG00000182645|HPRD:18604|Vega:OTTHUMG00000019098 10 10q25.3 coiled-coil domain containing 172 protein-coding CCDC172 coiled-coil domain containing 172 O UPF0628 protein C10orf96|coiled-coil domain-containing protein 172 20121230 -9606 374378 GALNTL4 - GALNT15|GALNT18|GalNAc-T15 HGNC:30488|Ensembl:ENSG00000110328|HPRD:13564|Vega:OTTHUMG00000165707 11 11p15.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 protein-coding GALNTL4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 O GalNAc-transferase 18|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15|galNAc-T-like protein 4|polypeptide GalNAc transferase-like protein 4|pp-GaNTase-like protein 4|protein-UDP acetylgalactosaminyltransferase-like protein 4|putative polypeptide N-acetylgalactosaminyltransferase-like protein 4 20121230 -9606 374383 NCR3LG1 - B7-H6|B7H6|DKFZp686O24166 HGNC:42400|MIM:613714|Ensembl:ENSG00000188211|HPRD:16820|Vega:OTTHUMG00000165913 11 11p15.1 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 O B7 homolog 6|natural cytotoxicity triggering receptor 3 ligand 1|putative Ig-like domain-containing protein DKFZp686O24166/DKFZp686I21167 20121230 -9606 374387 DKFZp779M0652 - - - 11 11p11.2 uncharacterized DKFZp779M0652 miscRNA - - - - 20121230 -9606 374393 FAM111B hCG_1729960 CANP HGNC:24200|Ensembl:ENSG00000189057|HPRD:07096|Vega:OTTHUMG00000167279 11 11q12.1 family with sequence similarity 111, member B protein-coding FAM111B family with sequence similarity 111, member B O cancer-associated nucleoprotein|protein FAM111B 20121230 -9606 374395 TMEM179B - - HGNC:33744|Ensembl:ENSG00000185475|HPRD:14186|Vega:OTTHUMG00000167611 11 11q12.3 transmembrane protein 179B protein-coding TMEM179B transmembrane protein 179B O - 20121230 -9606 374403 TBC1D10C - CARABIN|EPI64C HGNC:24702|MIM:610831|Ensembl:ENSG00000175463|HPRD:13330|Vega:OTTHUMG00000167139 11 11q13.2 TBC1 domain family, member 10C protein-coding TBC1D10C TBC1 domain family, member 10C O carabin 20121230 -9606 374407 DNAJB13 - RSPH16A|TSARG5|TSARG6 HGNC:30718|MIM:610263|Ensembl:ENSG00000187726|HPRD:15573|Vega:OTTHUMG00000168093 11 11q13.4 DnaJ (Hsp40) homolog, subfamily B, member 13 protein-coding DNAJB13 DnaJ (Hsp40) homolog, subfamily B, member 13 O 1700014P03Rik|DnaJ (Hsp40) related, subfamily B, member 13|DnaJ-like protein|dnaJ homolog subfamily B member 13|radial spoke 16 homolog A|testis and spermatogenesis cell-related protein 6|testis spermatocyte apoptosis-related gene 6 protein|testis spermatogenesis apoptosis-related gene 3 protein|testis spermatogenesis apoptosis-related gene 6 protein|testis spermatogenesis apoptosis-related protein 6 20121230 -9606 374443 LOC374443 - - - 12 12p13.31 C-type lectin domain family 2, member D pseudogene pseudo - - - - 20121230 -9606 374454 KRT77 - K1B|KRT1B HGNC:20411|MIM:611158|Ensembl:ENSG00000189182|HPRD:13934|Vega:OTTHUMG00000169450 12 12q13.13 keratin 77 protein-coding KRT77 keratin 77 O CK-1B|K77|cytokeratin-1B|keratin 1B|keratin, type II cytoskeletal 1b|keratin-77|type-II keratin Kb39 20121230 -9606 374462 PTPRQ - DFNB84|DFNB84A|PTPGMC1|R-PTP-Q HGNC:9679|MIM:603317|Ensembl:ENSG00000139304|Vega:OTTHUMG00000170171 12 12q21.2 protein tyrosine phosphatase, receptor type, Q protein-coding PTPRQ protein tyrosine phosphatase, receptor type, Q O phosphotidylinositol phosphatase PTPRQ|protein-tyrosine phosphatase, receptor-type, expressed by glomerular mesangial cells|receptor-type tyrosine-protein phosphatase Q 20121230 -9606 374467 C12orf63 - - HGNC:24777|Ensembl:ENSG00000188596|HPRD:13484 12 12q23.1 chromosome 12 open reading frame 63 protein-coding C12orf63 chromosome 12 open reading frame 63 O putative uncharacterized protein C12orf63 20121230 -9606 374470 C12orf42 - - HGNC:24729|Ensembl:ENSG00000179088|HPRD:13393|Vega:OTTHUMG00000169988 12 12q23.2 chromosome 12 open reading frame 42 protein-coding C12orf42 chromosome 12 open reading frame 42 O uncharacterized protein C12orf42 20121230 -9606 374491 TPTE2P6 - - HGNC:42644 13 13q12.12 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 pseudo TPTE2P6 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 O - 20121230 -9606 374500 THSD1P1 - THSD1P HGNC:31375 13 13q14.3 thrombospondin, type I, domain containing 1 pseudogene 1 pseudo THSD1P1 thrombospondin, type I, domain containing 1 pseudogene 1 O - 20121230 -9606 374569 ASPG - C14orf76|GPA/WT HGNC:20123|Ensembl:ENSG00000166183|Vega:OTTHUMG00000170045 14 14q32.33 asparaginase homolog (S. cerevisiae) protein-coding ASPG asparaginase homolog (S. cerevisiae) O 60 kDa lysophospholipase|wild-type L-asparaginase 20121230 -9606 374618 TEX9 - - HGNC:29585|Ensembl:ENSG00000151575|HPRD:15493|Vega:OTTHUMG00000132035 15 15q21.3 testis expressed 9 protein-coding TEX9 testis expressed 9 O testis expressed sequence 9|testis-expressed sequence 9 protein 20121230 -9606 374650 GOLGA6L5 - GOLGA6L8 HGNC:30472|HPRD:13416|HPRD:13442 15 15q25.2 golgin A6 family-like 5 (pseudogene) pseudo GOLGA6L5 golgin A6 family-like 5 (pseudogene) O - 20121209 -9606 374654 KIF7 UNQ340/PRO539 ACLS|HLS2|JBTS12|UNQ340 HGNC:30497|MIM:611254|Ensembl:ENSG00000166813|HPRD:14187|Vega:OTTHUMG00000157177 15 15q26.1 kinesin family member 7 protein-coding KIF7 kinesin family member 7 O EQYK340|kinesin-like protein KIF7 20121230 -9606 374655 ZNF710 - - HGNC:25352|Ensembl:ENSG00000140548|HPRD:13329|Vega:OTTHUMG00000149812 15 15q26.1 zinc finger protein 710 protein-coding ZNF710 zinc finger protein 710 O - 20121230 -9606 374659 HDDC3 - MESH1 HGNC:30522|Ensembl:ENSG00000184508|HPRD:14635|Vega:OTTHUMG00000141260 15 15q26.1 HD domain containing 3 protein-coding HDDC3 HD domain containing 3 O (ppGpp)ase|HD domain-containing protein 3|guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1|metazoan SpoT homolog 1|metazoan SpoT homolog-1|penta-phosphate guanosine-3'-pyrophosphohydrolase 20121230 -9606 374666 WASH3P - FAM39DP HGNC:24362|HPRD:16921 15 15q26.3 WAS protein family homolog 3 pseudogene pseudo WASH3P WAS protein family homolog 3 pseudogene O - 20121230 -9606 374677 WASH4P - CXYorf1P|FAM39CP HGNC:14126 16 16p13.3 WAS protein family homolog 4 pseudogene pseudo WASH4P WAS protein family homolog 4 pseudogene O - 20121230 -9606 374739 TEPP - - HGNC:33745|MIM:610264|Ensembl:ENSG00000159648|HPRD:15486|Vega:OTTHUMG00000133463 16 16q21 testis, prostate and placenta expressed protein-coding TEPP testis, prostate and placenta expressed O testis, prostate and placenta-expressed protein|testis/prostate/placenta-expressed protein 20121230 -9606 374768 SPEM1 - C17orf83 HGNC:32429|Ensembl:ENSG00000181323|HPRD:14188|Vega:OTTHUMG00000178189 17 17p13.1 spermatid maturation 1 protein-coding SPEM1 spermatid maturation 1 O spermatid maturation protein 1 20121230 -9606 374786 EFCAB5 - - HGNC:24801|Ensembl:ENSG00000176927|HPRD:13528|Vega:OTTHUMG00000179743 17 17q11.2 EF-hand calcium binding domain 5 protein-coding EFCAB5 EF-hand calcium binding domain 5 O EF-hand calcium-binding domain-containing protein 5 20121230 -9606 374819 LRRC37A3 - LRRC37A HGNC:32427|Ensembl:ENSG00000176809|Vega:OTTHUMG00000132307 17 17q24.1 leucine rich repeat containing 37, member A3 protein-coding LRRC37A3 leucine rich repeat containing 37, member A3 O leucine-rich repeat-containing protein 37A3 20121230 -9606 374860 ANKRD30B - NY-BR-1.1 HGNC:24165|Ensembl:ENSG00000180777|Vega:OTTHUMG00000178841 18 18p11.21 ankyrin repeat domain 30B protein-coding ANKRD30B ankyrin repeat domain 30B O ankyrin repeat domain-containing protein 30B|breast cancer antigen NY-BR-1.1|serologically defined breast cancer antigen NY-BR-1.1 20121230 -9606 374864 CCDC178 - C18orf34 HGNC:29588|Ensembl:ENSG00000166960|HPRD:12691|Vega:OTTHUMG00000132279 18 18q12.1 coiled-coil domain containing 178 protein-coding CCDC178 coiled-coil domain containing 178 O uncharacterized protein C18orf34 20121230 -9606 374868 ATP9B HUSSY-20 ATPASEP|ATPIIB|NEO1L|hMMR1 HGNC:13541|MIM:614446|Ensembl:ENSG00000166377|HPRD:16528|Vega:OTTHUMG00000132898 18 18q23 ATPase, class II, type 9B protein-coding ATP9B ATPase, class II, type 9B O ATPase type IV, phospholipid transporting (P-type)|macrophage MHC receptor 1|probable phospholipid-transporting ATPase IIB 20121230 -9606 374872 C19orf35 - - HGNC:24793|Ensembl:ENSG00000188305|HPRD:12707|Vega:OTTHUMG00000178460 19 19p13.3 chromosome 19 open reading frame 35 protein-coding C19orf35 chromosome 19 open reading frame 35 O putative uncharacterized protein C19orf35 20121230 -9606 374875 HSD11B1L - 11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2 HGNC:30419|Ensembl:ENSG00000167733|HPRD:18022|Vega:OTTHUMG00000178586 19 19p13.3 hydroxysteroid (11-beta) dehydrogenase 1-like protein-coding HSD11B1L hydroxysteroid (11-beta) dehydrogenase 1-like O 11-beta-hydroxysteroid dehydrogenase type 3|hydroxysteroid 11-beta-dehydrogenase 1-like protein|short chain dehydrogenase/reductase 10|short chain dehydrogenase/reductase family 26C, member 2 20121230 -9606 374877 C19orf45 - - HGNC:24745|Ensembl:ENSG00000198723|HPRD:13420 19 19p13.2 chromosome 19 open reading frame 45 protein-coding C19orf45 chromosome 19 open reading frame 45 O uncharacterized protein C19orf45 20121230 -9606 374879 ZNF699 - hang HGNC:24750|MIM:609571|Ensembl:ENSG00000196110|Vega:OTTHUMG00000179941 19 19p13.2 zinc finger protein 699 protein-coding ZNF699 zinc finger protein 699 O hangover homolog|hangover, Drosophila, homolog of 20121230 -9606 374882 TMEM205 UNQ501/PRO1018 UNQ501 HGNC:29631|MIM:613771|Ensembl:ENSG00000105518|HPRD:18605|Vega:OTTHUMG00000182021 19 19p13.2 transmembrane protein 205 protein-coding TMEM205 transmembrane protein 205 O MBC3205 20121230 -9606 374887 YJEFN3 - - HGNC:24785|Ensembl:ENSG00000250067|HPRD:13498|Vega:OTTHUMG00000162251 19 19p13.11 YjeF N-terminal domain containing 3 protein-coding YJEFN3 YjeF N-terminal domain containing 3 O apolipoprotein A1 binding protein|hYjeF_N3|hYjeF_N3-19p13.11|yjeF N-terminal domain-containing protein 3|yjeF_N3 20121230 -9606 374890 LOC374890 - - - 19 19p12 uncharacterized LOC374890 unknown - - - - 20121230 -9606 374897 SBSN UNQ698/PRO1343 UNQ698 HGNC:24950|MIM:609969|Ensembl:ENSG00000189001|HPRD:18498|Vega:OTTHUMG00000048102 19 19q13.13 suprabasin protein-coding SBSN suprabasin O HLAR698 20121230 -9606 374899 ZNF829 - - HGNC:34032|Ensembl:ENSG00000185869|Vega:OTTHUMG00000048161 19 19q13.12 zinc finger protein 829 protein-coding ZNF829 zinc finger protein 829 O - 20121230 -9606 374900 ZNF568 - - HGNC:25392|Ensembl:ENSG00000198453|HPRD:15848|Vega:OTTHUMG00000048160 19 19q13.12 zinc finger protein 568 protein-coding ZNF568 zinc finger protein 568 O - 20121230 -9606 374907 B3GNT8 - B3GALT7|BGALT15|beta3Gn-T8 HGNC:24139|Ensembl:ENSG00000177191|HPRD:12510 19 19q13.2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 protein-coding B3GNT8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 O BGnT-8|UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 7|beta galactosyltransferase BGALT15|beta-1,3-Gn-T8|beta-1,3-N-acetylglucosaminyltransferase 8|beta1,3-N-acetylglucosaminyltransferase 8 20121230 -9606 374918 IGFL1 UNQ644/PRO1274 APRG644|UNQ644 HGNC:24093|MIM:610544|Ensembl:ENSG00000188293|HPRD:17139 19 19q13.32 IGF-like family member 1 protein-coding IGFL1 IGF-like family member 1 O insulin growth factor-like family member 1 20121230 -9606 374920 C19orf68 - - HGNC:34495|Ensembl:ENSG00000185453|HPRD:14189 19 19q13.33 chromosome 19 open reading frame 68 protein-coding C19orf68 chromosome 19 open reading frame 68 O uncharacterized protein C19orf68 20121230 -9606 374928 ZNF773 - ZNF419B HGNC:30487|Ensembl:ENSG00000152439|HPRD:14655 19 19q13.43 zinc finger protein 773 protein-coding ZNF773 zinc finger protein 773 O zinc finger protein 419B 20121230 -9606 374946 DRAXIN PSEC0258 AGPA3119|C1orf187|UNQ3119|neucrin HGNC:25054|MIM:612682|Ensembl:ENSG00000162490|HPRD:11844|Vega:OTTHUMG00000002227 1 1p36.22 dorsal inhibitory axon guidance protein protein-coding DRAXIN dorsal inhibitory axon guidance protein O dorsal repulsive axon guidance protein|draxin|neural tissue-specific cysteine-rich protein 20121230 -9606 374955 SPATA21 RP11-430L17.3 spergen-2|spergen2 HGNC:28026|Ensembl:ENSG00000187144|HPRD:14190|Vega:OTTHUMG00000002312 1 1p36.13 spermatogenesis associated 21 protein-coding SPATA21 spermatogenesis associated 21 O spermatogenesis-associated protein 21 20121230 -9606 374969 CCDC23 - - HGNC:29204|Ensembl:ENSG00000177868|HPRD:14191|Vega:OTTHUMG00000007566 1 1p34.2 coiled-coil domain containing 23 protein-coding CCDC23 coiled-coil domain containing 23 O coiled-coil domain-containing protein 23 20121230 -9606 374973 TEX38 - ATPAF1-AS1|C1orf223|THEG4 HGNC:29589|Ensembl:ENSG00000186118|Vega:OTTHUMG00000007991 1 1p33 testis expressed 38 protein-coding TEX38 testis expressed 38 O ATPAF1 antisense RNA 1 (non-protein coding)|ATPAF1 antisense gene protein 1|testis highly expressed protein 4|uncharacterized protein ATPAF1-AS1 20121230 -9606 374977 MROH7 - C1orf175|HEATR8 HGNC:24802|Ensembl:ENSG00000184313|HPRD:10993|Vega:OTTHUMG00000009890 1 1p32.3 maestro heat-like repeat family member 7 protein-coding MROH7 maestro heat-like repeat family member 7 O HEAT repeat containing 8|HEAT repeat-containing protein 8 20121230 -9606 374986 FAM73A - - HGNC:24741|Ensembl:ENSG00000180488|HPRD:13415|Vega:OTTHUMG00000009766 1 1p31.1 family with sequence similarity 73, member A protein-coding FAM73A family with sequence similarity 73, member A O protein FAM73A 20121230 -9606 374987 NEXN-AS1 - C1orf118 HGNC:31983|HPRD:13542 1 1p31.1 NEXN antisense RNA 1 unknown NEXN-AS1 NEXN antisense RNA 1 O - 20121230 -9606 375027 S100A7P2 - S100A7L4|s100a7e HGNC:21656 1 1q21.3 S100 calcium binding protein A7 pseudogene 2 pseudo S100A7P2 S100 calcium binding protein A7 pseudogene 2 O - 20121230 -9606 375033 PEAR1 RP11-107D16.3 JEDI|MEGF12 HGNC:33631|MIM:610278|Ensembl:ENSG00000187800|Vega:OTTHUMG00000041293 1 1q23.1 platelet endothelial aggregation receptor 1 protein-coding PEAR1 platelet endothelial aggregation receptor 1 O hPEAR1|multiple EGF-like domains protein 12|multiple EGF-like-domains 12|multiple epidermal growth factor-like domains protein 12 20121230 -9606 375035 SFT2D2 RP4-747L4.1 UNQ512|dJ747L4.C1.2 HGNC:25140|Ensembl:ENSG00000213064|HPRD:14192|Vega:OTTHUMG00000034650 1 1q24.2 SFT2 domain containing 2 protein-coding SFT2D2 SFT2 domain containing 2 O SFT2 domain-containing protein 2|vesicle transport protein SFT2B 20121230 -9606 375056 MIA3 RP11-378J18.4 ARNT|D320|TANGO|TANGO1|UNQ6077 HGNC:24008|MIM:613455|Ensembl:ENSG00000154305|Vega:OTTHUMG00000037543 1 1q41 melanoma inhibitory activity family, member 3 protein-coding MIA3 melanoma inhibitory activity family, member 3 O C219 reactive peptide|C219-reactive peptide|melanoma inhibitory activity protein 3|transport and Golgi organization protein 1 20121230 -9606 375057 C1orf95 RP11-9C4.1 - HGNC:30491|Ensembl:ENSG00000203685|HPRD:16821|Vega:OTTHUMG00000037583 1 1q42.12 chromosome 1 open reading frame 95 protein-coding C1orf95 chromosome 1 open reading frame 95 O uncharacterized membrane protein C1orf95 20121230 -9606 375061 FAM89A - C1orf153|RP11-423F24.2 HGNC:25057|Ensembl:ENSG00000182118|HPRD:11845|Vega:OTTHUMG00000037960 1 1q42.2 family with sequence similarity 89, member A protein-coding FAM89A family with sequence similarity 89, member A O protein FAM89A 20121230 -9606 375133 PI4KAP2 - - HGNC:33577|HPRD:14194 22 22q11.21 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 pseudo PI4KAP2 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 O - 20121230 -9606 375189 PFN4 - - HGNC:31103|Ensembl:ENSG00000176732|HPRD:15120|Vega:OTTHUMG00000090816 2 2p23.3 profilin family, member 4 protein-coding PFN4 profilin family, member 4 O profilin IV|profilin-4 20121230 -9606 375190 FAM228B - - HGNC:24736|Ensembl:ENSG00000219626|HPRD:13403|Vega:OTTHUMG00000151901 2 2p23.3 family with sequence similarity 228, member B protein-coding FAM228B family with sequence similarity 228, member B O UPF0638 protein B|protein FAM228B 20121230 -9606 375196 LOC375196 - - - 2 2p22.3 uncharacterized LOC375196 miscRNA - - - - 20121230 -9606 375248 ANKRD36 UNQ2430/PRO499 UNQ2430 HGNC:24079|Ensembl:ENSG00000135976|HPRD:16492|Vega:OTTHUMG00000155256 2 2q11.2 ankyrin repeat domain 36 protein-coding ANKRD36 ankyrin repeat domain 36 O ankyrin repeat domain-containing protein 36|ankyrin repeat domain-containing protein 36A|ankyrin-related 20121230 -9606 375260 WASH2P - FAM39B HGNC:33145|HPRD:17562 2 2q13 WAS protein family homolog 2 pseudogene pseudo WASH2P WAS protein family homolog 2 pseudogene O - 20121230 -9606 375287 RBM43 - C2orf38 HGNC:24790|Ensembl:ENSG00000184898|HPRD:10992|Vega:OTTHUMG00000131866 2 2q23.3 RNA binding motif protein 43 protein-coding RBM43 RNA binding motif protein 43 O RNA-binding motif protein 43|RNA-binding protein 43 20121230 -9606 375295 LOC375295 - - - 2 2q31.1 uncharacterized LOC375295 miscRNA - - - - 20121230 -9606 375298 CERKL - RP26 HGNC:21699|MIM:608381|Ensembl:ENSG00000188452|HPRD:09757|Vega:OTTHUMG00000154315 2 2q31.3 ceramide kinase-like protein-coding CERKL ceramide kinase-like O ceramide kinase-like protein 20121230 -9606 375307 C2orf62 - - HGNC:25062|Ensembl:ENSG00000158428|HPRD:11846|Vega:OTTHUMG00000133106 2 2q35 chromosome 2 open reading frame 62 protein-coding C2orf62 chromosome 2 open reading frame 62 O uncharacterized protein C2orf62 20121230 -9606 375316 RBM44 - - HGNC:24756|Ensembl:ENSG00000177483|Vega:OTTHUMG00000152937 2 2q37.3 RNA binding motif protein 44 protein-coding RBM44 RNA binding motif protein 44 O RNA-binding motif protein 44|RNA-binding protein 44 20121230 -9606 375318 AQP12A - AQP-12|AQP12|AQPX2 HGNC:19941|MIM:609789|Ensembl:ENSG00000184945|HPRD:16504|Vega:OTTHUMG00000133353 2 2q37.3 aquaporin 12A protein-coding AQP12A aquaporin 12A O aquaporin X2|aquaporin-12A 20121230 -9606 375323 LHFPL4 - - HGNC:29568|MIM:610240|Ensembl:ENSG00000156959|HPRD:17361|Vega:OTTHUMG00000155066 3 3p25.3 lipoma HMGIC fusion partner-like 4 protein-coding LHFPL4 lipoma HMGIC fusion partner-like 4 O LHFP-like protein 4|lipoma HMGIC fusion partner-like 4 protein 20121230 -9606 375337 TOPAZ1 - C3orf77 HGNC:24746|MIM:614412|Ensembl:ENSG00000173769|Vega:OTTHUMG00000156172 3 3p21.31 testis and ovary specific PAZ domain containing 1 protein-coding TOPAZ1 testis and ovary specific PAZ domain containing 1 O testis and ovary-specific PAZ domain gene 1|testis- and ovary-specific PAZ domain-containing protein 1|topaz 1 20121230 -9606 375341 C3orf62 - - HGNC:24771|Ensembl:ENSG00000188315|HPRD:13475|Vega:OTTHUMG00000156819 3 3p21.31 chromosome 3 open reading frame 62 protein-coding C3orf62 chromosome 3 open reading frame 62 O uncharacterized protein C3orf62 20121230 -9606 375346 TMEM110 - - HGNC:30526|Ensembl:ENSG00000213533|HPRD:14675|Vega:OTTHUMG00000150346 3 3p21.1 transmembrane protein 110 protein-coding TMEM110 transmembrane protein 110 O - 20121230 -9606 375350 LOC375350 - - - 3 3p14.1 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) pseudogene pseudo - - - - 20121230 -9606 375387 LRRC33 UNQ3030/PRO9833 GARPL1|UNQ3030 HGNC:24613|Ensembl:ENSG00000174004|HPRD:17452|Vega:OTTHUMG00000155569 3 3q29 leucine rich repeat containing 33 protein-coding LRRC33 leucine rich repeat containing 33 O ELLP3030|leucine-rich repeat-containing protein 33 20121230 -9606 375444 C5orf34 - - HGNC:24738|Ensembl:ENSG00000172244|HPRD:13407|Vega:OTTHUMG00000131151 5 5p12 chromosome 5 open reading frame 34 protein-coding C5orf34 chromosome 5 open reading frame 34 O uncharacterized protein C5orf34 20121230 -9606 375449 MAST4 - - HGNC:19037|Ensembl:ENSG00000069020|HPRD:14195|Vega:OTTHUMG00000152471 5 5q12.3 microtubule associated serine/threonine kinase family member 4 protein-coding MAST4 microtubule associated serine/threonine kinase family member 4 O microtubule-associated serine/threonine-protein kinase 4 20121230 -9606 375484 SIMC1 - C5orf25|OOMA1 HGNC:24779|Ensembl:ENSG00000170085|HPRD:13486|Vega:OTTHUMG00000130663 5 5q35.2 SUMO-interacting motifs containing 1 protein-coding SIMC1 SUMO-interacting motifs containing 1 O oocyte maturation associated 1|uncharacterized protein C5orf25 20121230 -9606 375513 GUSBP4 - C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2 HGNC:18220|HPRD:16667 6 6p11.2 glucuronidase, beta pseudogene 4 pseudo GUSBP4 glucuronidase, beta pseudogene 4 O - 20121230 -9606 375519 GJB7 - CX25|bA136M9.1|connexin25 HGNC:16690|MIM:611921|Ensembl:ENSG00000164411|HPRD:13579|Vega:OTTHUMG00000015166 6 6q15 gap junction protein, beta 7, 25kDa protein-coding GJB7 gap junction protein, beta 7, 25kDa O connexin 25|connexin-25|gap junction beta-7 protein 20121230 -9606 375567 VWC2 UNQ739/PRO1434 PSST739|UNQ739 HGNC:30200|MIM:611108|Ensembl:ENSG00000188730|HPRD:18271|Vega:OTTHUMG00000129265 7 7p12.2 von Willebrand factor C domain containing 2 protein-coding VWC2 von Willebrand factor C domain containing 2 O brain-specific chordin-like protein|brorin|von Willebrand factor C domain-containing protein 2 20121230 -9606 375593 TRIM73 - TRIM50B HGNC:18162|MIM:612549|Ensembl:ENSG00000178809|HPRD:18606|Vega:OTTHUMG00000156075 7 7q11.23 tripartite motif containing 73 protein-coding TRIM73 tripartite motif containing 73 O tripartite motif-containing 50B|tripartite motif-containing 73|tripartite motif-containing protein 50B|tripartite motif-containing protein 73 20121230 -9606 375601 OR7E31P - OR7E114P|OR7E32P|OR7E45P|OR9-4|OST016|OST049|OST205 HGNC:8404 9 9q22.2 olfactory receptor, family 7, subfamily E, member 31 pseudogene pseudo OR7E31P olfactory receptor, family 7, subfamily E, member 31 pseudogene O - 20121230 -9606 375607 NAT16 - C7orf52 HGNC:22030|Ensembl:ENSG00000167011|HPRD:13434|Vega:OTTHUMG00000157110 7 7q22.1 N-acetyltransferase 16 (GCN5-related, putative) protein-coding NAT16 N-acetyltransferase 16 (GCN5-related, putative) O putative N-acetyltransferase 16|putative N-acetyltransferase C7orf52 20121230 -9606 375611 SLC26A5 - DFNB61|PRES HGNC:9359|MIM:604943|Ensembl:ENSG00000170615|HPRD:09224|Vega:OTTHUMG00000149911 7 7q22.1 solute carrier family 26, member 5 (prestin) protein-coding SLC26A5 solute carrier family 26, member 5 (prestin) O prestin|prestin (motor protein) 20121230 -9606 375612 LHFPL3 - LHFPL4 HGNC:6589|MIM:609719|Ensembl:ENSG00000187416|HPRD:17273|Vega:OTTHUMG00000157273 7 7q22.2 lipoma HMGIC fusion partner-like 3 protein-coding LHFPL3 lipoma HMGIC fusion partner-like 3 O LHFP-like protein 3|lipoma HMGIC fusion partner-like 3 protein|lipoma HMGIC fusion partner-like 4 20121230 -9606 375616 KCP - CRIM2|KCP1|NET67 HGNC:17585|MIM:609344|HPRD:14196 7 7q32.1 kielin/chordin-like protein protein-coding KCP kielin/chordin-like protein O CRIM-2|KCP-1|cysteine rich BMP regulator 2 (chordin-like)|cysteine-rich BMP regulator 2|cysteine-rich motor neuron 2 protein|kielin|kielin/chordin-like protein 1 20121230 -9606 375686 SPATC1 - SPATA15 HGNC:30510|MIM:610874|Ensembl:ENSG00000186583|HPRD:15433|Vega:OTTHUMG00000156976 8 8q24.3 spermatogenesis and centriole associated 1 protein-coding SPATC1 spermatogenesis and centriole associated 1 O speriolin|spermatogenesis and centriole-associated protein 1|spermatogenesis-associated protein 15|spermatogenic cell-specific Cdc20-binding protein 20121230 -9606 375690 WASH5P - - HGNC:33884 19 19p13.3 WAS protein family homolog 5 pseudogene pseudo WASH5P WAS protein family homolog 5 pseudogene O - 20121209 -9606 375704 ENHO UNQ470/PRO830 C9orf165|UNQ470 HGNC:24838|Ensembl:ENSG00000168913|HPRD:18263|Vega:OTTHUMG00000159589 9 9p13.3 energy homeostasis associated protein-coding ENHO energy homeostasis associated O GAAI470|adropin|energy homeostasis-associated protein 20121230 -9606 375719 AQP7P1 - bA251O17.3 HGNC:32048 9 9q13 aquaporin 7 pseudogene 1 pseudo AQP7P1 aquaporin 7 pseudogene 1 O - 20121230 -9606 375743 PTAR1 RP11-109D9.2 - HGNC:30449|Ensembl:ENSG00000188647|Vega:OTTHUMG00000019982 9 9q21.12 protein prenyltransferase alpha subunit repeat containing 1 protein-coding PTAR1 protein prenyltransferase alpha subunit repeat containing 1 O 4930428J16Rik|protein prenyltransferase alpha subunit repeat-containing protein 1 20121230 -9606 375748 ERCC6L2 RP11-346B7.2 C9orf102|RAD26L|SR278 HGNC:26922|Ensembl:ENSG00000182150|HPRD:17362|Vega:OTTHUMG00000020289 9 9q22.32 excision repair cross-complementing rodent repair deficiency, complementation group 6-like 2 protein-coding ERCC6L2 excision repair cross-complementing rodent repair deficiency, complementation group 6-like 2 O RAD26L hypothetical protein|putative DNA repair and recombination protein RAD26-like|putative repair and recombination helicase RAD26L|stretch responsive protein 278 20121230 -9606 375757 SWI5 RP11-395P17.9 C9orf119|bA395P17.9 HGNC:31412|Ensembl:ENSG00000175854|Vega:OTTHUMG00000020729 9 9q34.11 SWI5 recombination repair homolog (yeast) protein-coding SWI5 SWI5 recombination repair homolog (yeast) O DNA repair protein SWI5 homolog|HBV DNAPTP1-transactivated protein A|protein SAE3 homolog 20121230 -9606 375759 C9orf50 - - HGNC:23677|Ensembl:ENSG00000179058|HPRD:14197|Vega:OTTHUMG00000020786 9 9q34.11 chromosome 9 open reading frame 50 protein-coding C9orf50 chromosome 9 open reading frame 50 O uncharacterized protein C9orf50 20121230 -9606 375775 PNPLA7 RP11-48C7.2 C9orf111|NTE-R1|NTEL1 HGNC:24768|MIM:612122|Ensembl:ENSG00000130653|HPRD:12933|Vega:OTTHUMG00000020990 9 9q34.3 patatin-like phospholipase domain containing 7 protein-coding PNPLA7 patatin-like phospholipase domain containing 7 O patatin-like phospholipase domain-containing protein 7 20121230 -9606 375790 AGRN RP11-54O7.13-009 - HGNC:329|MIM:103320|Ensembl:ENSG00000188157|HPRD:10550|Vega:OTTHUMG00000040778 1 1p36.33 agrin protein-coding AGRN agrin O agrin proteoglycan 20121230 -9606 375791 C9orf169 RP13-122B23.5 - HGNC:30529|Ensembl:ENSG00000197191|HPRD:14696 9 9q34.3 chromosome 9 open reading frame 169 protein-coding C9orf169 chromosome 9 open reading frame 169 O UPF0574 protein C9orf169 20121230 -9606 375850 RBMY2BP - RBMY2B HGNC:9918 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member B pseudogene pseudo RBMY2BP RNA binding motif protein, Y-linked, family 2, member B pseudogene O - 20121209 -9606 375940 FLJ46361 - - HPRD:09964 10 10q26.13 deleted in malignant brain tumors 1 pseudogene pseudo - - - - 20121230 -9606 376132 LRRC10 - HRLRRP|LRRC10A HGNC:20264|MIM:610846|Ensembl:ENSG00000198812|HPRD:17449|Vega:OTTHUMG00000169384 12 12q15 leucine rich repeat containing 10 protein-coding LRRC10 leucine rich repeat containing 10 O leucine-rich repeat-containing protein 10 20121230 -9606 376267 RAB15 - - HGNC:20150|Ensembl:ENSG00000139998|HPRD:11467|Vega:OTTHUMG00000142810 14 14q23.3 RAB15, member RAS oncogene family protein-coding RAB15 RAB15, member RAS oncogene family O RAB15, member RAS onocogene family|Ras-related protein Rab-15 isoform AN1|Ras-related protein Rab-15 isoform AN2|Ras-related protein Rab-15 isoform AN3|ras-related protein Rab-15 20121230 -9606 376412 RNF126P1 - - HGNC:30340 17 17q22 ring finger protein 126 pseudogene 1 pseudo RNF126P1 ring finger protein 126 pseudogene 1 O - 20121230 -9606 376413 LOC376413 - - - 17 17q23.2 PAD-like unknown - - - - 20100404 -9606 376497 SLC27A1 - ACSVL5|FATP|FATP1 HGNC:10995|MIM:600691|Ensembl:ENSG00000130304|HPRD:11863 19 19p13.11 solute carrier family 27 (fatty acid transporter), member 1 protein-coding SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 O FATP-1|fatty acid transport protein 1|long-chain fatty acid transport protein 1|solute carrier family 27 member 1 20121230 -9606 376693 RPS10P7 - RPS10_2_147 HGNC:36423 1 1q32.1 ribosomal protein S10 pseudogene 7 pseudo RPS10P7 ribosomal protein S10 pseudogene 7 O - 20121230 -9606 376818 LOC376818 - - - 22 22q11.21 E2F transcription factor 6 pseudogene pseudo - - - - 20121230 -9606 376844 SDC4P - - HGNC:18903 22 22q12.2 syndecan 4 pseudogene pseudo SDC4P syndecan 4 pseudogene O - 20121230 -9606 376940 ZC3H6 - ZC3HDC6 HGNC:24762|Ensembl:ENSG00000188177|HPRD:15698|Vega:OTTHUMG00000153286 2 2q13 zinc finger CCCH-type containing 6 protein-coding ZC3H6 zinc finger CCCH-type containing 6 O zinc finger CCCH domain-containing protein 6|zinc finger CCCH type domain containing 6|zinc finger CCCH-type domain containing 6 20121230 -9606 377007 KLHL30 - - HGNC:24770|Ensembl:ENSG00000168427|HPRD:13472|Vega:OTTHUMG00000152905 2 2q37.3 kelch-like 30 (Drosophila) protein-coding KLHL30 kelch-like 30 (Drosophila) O kelch-like protein 30 20121230 -9606 377047 PRSS45 - TESSP5 HGNC:30717|Ensembl:ENSG00000188086|HPRD:07157|Vega:OTTHUMG00000133480 3 3p21.31 protease, serine, 45 protein-coding PRSS45 protease, serine, 45 O putative testis serine protease 5|serine protease 45|testis serine protease 5 20121230 -9606 377381 RPL24P4 RP1-125M3.2 RPL24_1_692|dJ125M3.1 HGNC:21371 6 6p21.1 ribosomal protein L24 pseudogene 4 pseudo RPL24P4 ribosomal protein L24 pseudogene 4 O - 20121230 -9606 377630 USP17L2 - DUB-3|DUB3 HGNC:34434|MIM:610186|Ensembl:ENSG00000223443|HPRD:16844|Vega:OTTHUMG00000165295 8 8p23.1 ubiquitin specific peptidase 17-like family member 2 protein-coding USP17L2 ubiquitin specific peptidase 17-like family member 2 O deubiquitinating enzyme 17-like protein 2|deubiquitinating enzyme 3|deubiquitinating protein 3|ubiquitin carboxyl-terminal hydrolase 17-like protein 2|ubiquitin specific peptidase 17-like 2|ubiquitin thioesterase 17-like protein 2|ubiquitin thiolesterase 17-like protein 2|ubiquitin-specific-processing protease 17-like protein 2 20121230 -9606 377677 CA13 - CAXIII HGNC:14914|MIM:611436|Ensembl:ENSG00000185015|HPRD:12992|Vega:OTTHUMG00000164940 8 8q21.2 carbonic anhydrase XIII protein-coding CA13 carbonic anhydrase XIII O CA-XIII|carbonate dehydratase XIII|carbonic anhydrase 13 20121230 -9606 377711 LOC377711 - - - 8 8q24.3 HEAT repeat-containing protein 7A-like protein-coding - - - KIAA1833-like|uncharacterized protein LOC377711 20121209 -9606 377841 ENTPD8 UNQ2492/PRO5779 GLSR2492|NTPDase-8|UNQ2492 HGNC:24860|Ensembl:ENSG00000188833|HPRD:16864|Vega:OTTHUMG00000131831 9 9q34.3 ectonucleoside triphosphate diphosphohydrolase 8 protein-coding ENTPD8 ectonucleoside triphosphate diphosphohydrolase 8 O E-NTPDase 8|NTPDase 8|NTPDase8|ecto-ATP-diphosphohydrolase|liver ecto-ATP-diphosphohydrolase|nucleoside triphosphate diphosphohydrolase-8 20121230 -9606 377997 TSPY12P - TSPYP2 HGNC:23904 Y Yp11.2 testis specific protein, Y-linked 12, pseudogene pseudo TSPY12P testis specific protein, Y-linked 12, pseudogene O - 20121230 -9606 378001 TSPY13P - TSPYP3 HGNC:23905 Y Yp11.2 testis specific protein, Y-linked 13, pseudogene pseudo TSPY13P testis specific protein, Y-linked 13, pseudogene O - 20121230 -9606 378008 CDY5P - - HGNC:23850 Y Yq11.222 chromodomain protein, Y-linked 5 pseudogene pseudo CDY5P chromodomain protein, Y-linked 5 pseudogene O - 20121209 -9606 378009 OFD1P1Y - OFD1P1|OFD1PY1|OFDYP1 HGNC:23873 Y Yq11.222 OFD1 pseudogene 1, Y-linked pseudo OFD1P1Y OFD1 pseudogene 1, Y-linked O - 20121209 -9606 378010 OFD1P2Y - OFD1P2|OFD1PY2|OFDYP2 HGNC:23874 Y Yq11.222 OFD1 pseudogene 2, Y-linked pseudo OFD1P2Y OFD1 pseudogene 2, Y-linked O - 20121209 -9606 378011 CDY9P - - HGNC:23851 Y Yq11.222 chromodomain protein, Y-linked 9 pseudogene pseudo CDY9P chromodomain protein, Y-linked 9 pseudogene O - 20121209 -9606 378013 TSPY14P - TSPYP4 HGNC:23906 Y Yq11.223 testis specific protein, Y-linked 14, pseudogene pseudo TSPY14P testis specific protein, Y-linked 14, pseudogene O - 20121209 -9606 378014 CDY11P - - HGNC:23852 Y Yq11.223 chromodomain protein, Y-linked 11 pseudogene pseudo CDY11P chromodomain protein, Y-linked 11 pseudogene O - 20121209 -9606 378108 TRIM74 - TRIM50C HGNC:17453|MIM:612550|Ensembl:ENSG00000155428|HPRD:15567|Vega:OTTHUMG00000129851 7 7q11.23 tripartite motif containing 74 protein-coding TRIM74 tripartite motif containing 74 O tripartite motif-containing 50C|tripartite motif-containing 74|tripartite motif-containing protein 50C|tripartite motif-containing protein 74 20121230 -9606 378426 AIS2 - VAMAS3 HGNC:23054|MIM:608391 7 - autoimmune susceptibility 2 unknown AIS2 autoimmune susceptibility 2 O - 20120622 -9606 378427 AIS3 - VAMAS4 HGNC:23083|MIM:608392 8 - autoimmune susceptibility 3 (vitiligo specific) unknown AIS3 autoimmune susceptibility 3 (vitiligo specific) O - 20120622 -9606 378483 MRX80 - - HGNC:18872 X Xq22-q24 mental retardation, X-linked 80 unknown MRX80 mental retardation, X-linked 80 O - 20110215 -9606 378484 MRX82 - - HGNC:21626|MIM:300518 X Xq24-q25 mental retardation, X-linked 82 unknown MRX82 mental retardation, X-linked 82 O - 20120622 -9606 378706 RN7SL2 - 7L1C|7L30.1|7SL1c|RNSRP2 HGNC:23134|MIM:612179 14 14q21.3 RNA, 7SL, cytoplasmic 2 snRNA RN7SL2 RNA, 7SL, cytoplasmic 2 O - 20121230 -9606 378707 RN7SL3 - 7L30.2|RNSRP3 HGNC:23135|MIM:612180 14 14q21.3 RNA, 7SL, cytoplasmic 3 pseudo RN7SL3 RNA, 7SL, cytoplasmic 3 O - 20121230 -9606 378708 APITD1 - CENP-S|CENPS|FAAP16|MHF1 HGNC:23163|MIM:609130|Ensembl:ENSG00000175279|Vega:OTTHUMG00000059085 1 1p36.22 apoptosis-inducing, TAF9-like domain 1 protein-coding APITD1 apoptosis-inducing, TAF9-like domain 1 O FANCM-interacting histone fold protein 1|Fanconi anemia-associated polypeptide of 16 kDa|apoptosis-inducing TAF9-like domain-containing protein 1|centromere protein S 20121230 -9606 378805 FLJ43663 - - - 7 7q32.3 uncharacterized LOC378805 miscRNA - - - - 20121230 -9606 378807 CATSPER4 - - HGNC:23220|MIM:609121|Ensembl:ENSG00000188782|HPRD:18607|Vega:OTTHUMG00000003383 1 1p35.3 cation channel, sperm associated 4 protein-coding CATSPER4 cation channel, sperm associated 4 O cation channel sperm-associated protein 4|ion channel CatSper4 20121230 -9606 378810 SNX19P1 - SNX19P HGNC:16765 21 21q11.2 sorting nexin 19 pseudogene 1 pseudo SNX19P1 sorting nexin 19 pseudogene 1 O - 20121230 -9606 378818 RPL37P3 - RL37P|RPL37_13_1720 HGNC:17238 21 21q21.1 ribosomal protein L37 pseudogene 3 pseudo RPL37P3 ribosomal protein L37 pseudogene 3 O - 20121230 -9606 378819 RPL37P4 - RL37P2|RPL37_10_1721 HGNC:17239 21 21q21.1 ribosomal protein L37 pseudogene 4 pseudo RPL37P4 ribosomal protein L37 pseudogene 4 O - 20121230 -9606 378825 LINC00162 - C21orf113|NCRNA00162|NLC1-C|NLC1C|PRED74 HGNC:19725 21 21q22.3 long intergenic non-protein coding RNA 162 miscRNA LINC00162 long intergenic non-protein coding RNA 162 O - 20121230 -9606 378828 LINC00317 - C21orf117|NCRNA00317|PRED89 HGNC:23126 21 - long intergenic non-protein coding RNA 317 miscRNA LINC00317 long intergenic non-protein coding RNA 317 O - 20121230 -9606 378832 COL18A1-AS1 - C21orf123|NCRNA00175|PRED80 HGNC:23132|HPRD:10736 21 21q22.3 COL18A1 antisense RNA 1 miscRNA COL18A1-AS1 COL18A1 antisense RNA 1 O - 20121230 -9606 378881 MIR381HG - C14orf89|NCRNA00225 HGNC:20136 14 14q32.31 MIR381 host gene (non-protein coding) miscRNA MIR381HG MIR381 host gene (non-protein coding) O - 20121021 -9606 378882 MRX84 - - HGNC:20228|MIM:300505 X Xp11.3-q22.3 mental retardation, X-linked 84 unknown MRX84 mental retardation, X-linked 84 O - 20120622 -9606 378884 NHLRC1 - EPM2A|EPM2B|MALIN|bA204B7.2 HGNC:21576|MIM:608072|Ensembl:ENSG00000187566|HPRD:06995|Vega:OTTHUMG00000014315 6 6p22.3 NHL repeat containing 1 protein-coding NHLRC1 NHL repeat containing 1 O E3 ubiquitin-protein ligase NHLRC1|NHL repeat-containing protein 1 20121230 -9606 378888 HSN1B - - MIM:608088 3 3p24-p22 Hereditary sensory neuropathy, type IB unknown - - - - 20120622 -9606 378925 RNF148 - - HGNC:22411|Ensembl:ENSG00000235631|HPRD:11512|Vega:OTTHUMG00000157099 7 7q31.33 ring finger protein 148 protein-coding RNF148 ring finger protein 148 O RING finger protein 148 20121230 -9606 378938 MALAT1 PRO1073 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853 HGNC:29665|MIM:607924 11 11q13.1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) miscRNA MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) O - 20121230 -9606 378948 RBMY1B - - HGNC:23914|Ensembl:ENSG00000242875|HPRD:17958|Vega:OTTHUMG00000042045 Y Yq11.223 RNA binding motif protein, Y-linked, family 1, member B protein-coding RBMY1B RNA binding motif protein, Y-linked, family 1, member B O RNA-binding motif protein, Y chromosome, family 1 member B 20121209 -9606 378949 RBMY1D - - HGNC:23915|Ensembl:ENSG00000244395|HPRD:17959|Vega:OTTHUMG00000043598 Y Yq11.223 RNA binding motif protein, Y-linked, family 1, member D protein-coding RBMY1D RNA binding motif protein, Y-linked, family 1, member D O RNA-binding motif protein, Y chromosome, family 1 member D 20121209 -9606 378950 RBMY1E - - HGNC:23916|Ensembl:ENSG00000242389|HPRD:17960|Vega:OTTHUMG00000043602 Y Yq11.223 RNA binding motif protein, Y-linked, family 1, member E protein-coding RBMY1E RNA binding motif protein, Y-linked, family 1, member E O RNA-binding motif protein, Y chromosome, family 1 member E 20121209 -9606 378951 RBMY1J - - HGNC:23917|Ensembl:ENSG00000226941|HPRD:15233|Vega:OTTHUMG00000043594 Y Yq11.223 RNA binding motif protein, Y-linked, family 1, member J protein-coding RBMY1J RNA binding motif protein, Y-linked, family 1, member J O RNA-binding motif protein, Y chromosome, family 1 member F/J|y chromosome RNA recognition motif 2 20121230 -9606 378952 RBMY2GP - - HGNC:23892 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member G pseudogene pseudo RBMY2GP RNA binding motif protein, Y-linked, family 2, member G pseudogene O - 20121209 -9606 378953 RBMY2HP - - HGNC:23893 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member H pseudogene pseudo RBMY2HP RNA binding motif protein, Y-linked, family 2, member H pseudogene O - 20121230 -9606 378955 RBMY2JP - - HGNC:23918 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member J pseudogene pseudo RBMY2JP RNA binding motif protein, Y-linked, family 2, member J pseudogene O - 20121209 -9606 378956 RBMY2NP - - HGNC:23919 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member N pseudogene pseudo RBMY2NP RNA binding motif protein, Y-linked, family 2, member N pseudogene O - 20121230 -9606 379003 DFNB40 - - HGNC:20408|MIM:608264 22 22q11.21-q12.1 deafness, autosomal recessive 40 unknown DFNB40 deafness, autosomal recessive 40 O - 20120622 -9606 379005 RBMY2OP - - HGNC:23894 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member O pseudogene pseudo RBMY2OP RNA binding motif protein, Y-linked, family 2, member O pseudogene O - 20121230 -9606 379006 RBMY2QP - - HGNC:23895 Y Yp11.2 RNA binding motif protein, Y-linked, family 2, member Q pseudogene pseudo RBMY2QP RNA binding motif protein, Y-linked, family 2, member Q pseudogene O - 20121230 -9606 379007 RBMY2SP - - HGNC:23896 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member S pseudogene pseudo RBMY2SP RNA binding motif protein, Y-linked, family 2, member S pseudogene O - 20121209 -9606 379008 RBMY2TP - - HGNC:23897 Y Yq11.222 RNA binding motif protein, Y-linked, family 2, member T pseudogene pseudo RBMY2TP RNA binding motif protein, Y-linked, family 2, member T pseudogene O - 20121209 -9606 379009 RBMY2UP - - HGNC:23898 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member U pseudogene pseudo RBMY2UP RNA binding motif protein, Y-linked, family 2, member U pseudogene O - 20121209 -9606 379010 RBMY2VP - - HGNC:23899 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member V pseudogene pseudo RBMY2VP RNA binding motif protein, Y-linked, family 2, member V pseudogene O - 20121209 -9606 379011 RBMY2WP - - HGNC:23900 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member W pseudogene pseudo RBMY2WP RNA binding motif protein, Y-linked, family 2, member W pseudogene O - 20121209 -9606 379012 RBMY2XP - - HGNC:23901 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member X pseudogene pseudo RBMY2XP RNA binding motif protein, Y-linked, family 2, member X pseudogene O - 20121209 -9606 379013 RNF138P1 - - HGNC:30342 5 5q11.2 ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1 pseudo RNF138P1 ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1 O - 20121230 -9606 379024 RBMY2YP - - HGNC:23902 Y Yq11.223 RNA binding motif protein, Y-linked, family 2, member Y pseudogene pseudo RBMY2YP RNA binding motif protein, Y-linked, family 2, member Y pseudogene O - 20121209 -9606 379025 FLJ31306 - - - 14 14q23.1 uncharacterized LOC379025 miscRNA - - - - 20121230 -9606 379027 TSPY5P - TSPYP5 HGNC:23907 Y Yp11.2 testis specific protein, Y-linked 5, pseudogene pseudo TSPY5P testis specific protein, Y-linked 5, pseudogene O - 20121230 -9606 379028 XKRYP1 - - HGNC:23908 Y Yq11.221 XK, Kell blood group complex subunit-related, Y-linked pseudogene 1 pseudo XKRYP1 XK, Kell blood group complex subunit-related, Y-linked pseudogene 1 O - 20121209 -9606 379029 XKRYP2 - - HGNC:23909 Y Yq11.222 XK, Kell blood group complex subunit-related, Y-linked pseudogene 2 pseudo XKRYP2 XK, Kell blood group complex subunit-related, Y-linked pseudogene 2 O - 20121209 -9606 379030 XKRYP3 - - HGNC:23910 Y Yq11.223 XK, Kell blood group complex subunit-related, Y-linked pseudogene 3 pseudo XKRYP3 XK, Kell blood group complex subunit-related, Y-linked pseudogene 3 O - 20121209 -9606 379031 XKRYP4 - - HGNC:23911 Y Yq11.223 XK, Kell blood group complex subunit-related, Y-linked pseudogene 4 pseudo XKRYP4 XK, Kell blood group complex subunit-related, Y-linked pseudogene 4 O - 20121209 -9606 379032 XKRYP5 - - HGNC:23912 Y Yq11.223 XK, Kell blood group complex subunit-related, Y-linked pseudogene 5 pseudo XKRYP5 XK, Kell blood group complex subunit-related, Y-linked pseudogene 5 O - 20121209 -9606 379033 XKRYP6 - - HGNC:23913 Y Yq11.23 XK, Kell blood group complex subunit-related, Y-linked pseudogene 6 pseudo XKRYP6 XK, Kell blood group complex subunit-related, Y-linked pseudogene 6 O - 20121209 -9606 379034 FLJ10489 - - - 8 8q22.3 uncharacterized protein FLJ10489 unknown - - - - 20120511 -9606 386593 CHKB-CPT1B - CHKL-CPT1B HGNC:41998|Ensembl:ENSG00000254413|Vega:OTTHUMG00000166282 22 22q13.33 CHKB-CPT1B readthrough (non-protein coding) miscRNA CHKB-CPT1B CHKB-CPT1B readthrough (non-protein coding) O - 20121230 -9606 386597 RNF144A-AS1 - - HGNC:30963 2 2p25.2 RNF144A antisense RNA 1 miscRNA RNF144A-AS1 RNF144A antisense RNA 1 O - 20121230 -9606 386607 ZFP91-CNTF - - HGNC:33441|Ensembl:ENSG00000255073|Vega:OTTHUMG00000166280 11 11q12.2 ZFP91-CNTF readthrough (non-protein coding) miscRNA ZFP91-CNTF ZFP91-CNTF readthrough (non-protein coding) O - 20121230 -9606 386608 RNASEH2CP1 - AYP1p1 HGNC:24117 Y Yp11.31 ribonuclease H2, subunit C pseudogene 1 pseudo RNASEH2CP1 ribonuclease H2, subunit C pseudogene 1 O - 20121230 -9606 386610 LOC386610 - - - 22 22q11.21 E2F transcription factor 6 pseudogene pseudo - - - - 20121230 -9606 386616 SCKL3 - - HGNC:20806|MIM:608664 14 14q23 Seckel syndrome 3 unknown SCKL3 Seckel syndrome 3 O - 20120622 -9606 386617 KCTD8 - - HGNC:22394|Ensembl:ENSG00000183783|HPRD:13771|Vega:OTTHUMG00000099409 4 4p13 potassium channel tetramerisation domain containing 8 protein-coding KCTD8 potassium channel tetramerisation domain containing 8 O BTB/POZ domain-containing protein KCTD8 20121230 -9606 386618 KCTD4 - bA321C24.3 HGNC:23227|Ensembl:ENSG00000180332|HPRD:13767 13 13q14.12 potassium channel tetramerisation domain containing 4 protein-coding KCTD4 potassium channel tetramerisation domain containing 4 O BTB/POZ domain-containing protein KCTD4 20121230 -9606 386627 FLJ38109 - - - 5 5q33.2 uncharacterized LOC386627 miscRNA - - - - 20121230 -9606 386653 IL31 - IL-31 HGNC:19372|MIM:609509|Ensembl:ENSG00000204671|HPRD:11877|Vega:OTTHUMG00000168916 12 12q24.31 interleukin 31 protein-coding IL31 interleukin 31 O interleukin-31 20121230 -9606 386654 OSTF1P1 - OSTF1P HGNC:31439 12 12q24.1-q24.2 osteoclast stimulating factor 1 pseudogene 1 pseudo OSTF1P1 osteoclast stimulating factor 1 pseudogene 1 O - 20121230 -9606 386665 AURKAPS2 - STK6LP HGNC:18612 10 10q25.3 aurora kinase A pseudogene 2 pseudo AURKAPS2 aurora kinase A pseudogene 2 O - 20121230 -9606 386671 FLJ44715 - - - 10 10q22.3 uncharacterized LOC386671 unknown - - - - 20120710 -9606 386672 KRTAP10-4 - KAP10.4|KAP18-4|KRTAP10.4|KRTAP18-4|KRTAP18.4 HGNC:20521|Ensembl:ENSG00000215454|HPRD:11190|Vega:OTTHUMG00000057641 21 21q22.3 keratin associated protein 10-4 protein-coding KRTAP10-4 keratin associated protein 10-4 O high sulfur keratin-associated protein 10.4|keratin associated protein 18-4|keratin-associated protein 10-4|keratin-associated protein 10.4|keratin-associated protein 18-4|keratin-associated protein 18.4 20121230 -9606 386674 KRTAP10-6 - KAP10.6|KAP18.6|KRTAP18-6|KRTAP18.6 HGNC:20523|Ensembl:ENSG00000188155|HPRD:11192|Vega:OTTHUMG00000057634 21 21q22.3 keratin associated protein 10-6 protein-coding KRTAP10-6 keratin associated protein 10-6 O high sulfur keratin-associated protein 10.6|keratin associated protein 18-6|keratin-associated protein 10-6|keratin-associated protein 10.6|keratin-associated protein 18-6|keratin-associated protein 18.6 20121230 -9606 386675 KRTAP10-7 - KAP10.7|KAP18.7|KRTAP18-7 HGNC:22970|Ensembl:ENSG00000205441|HPRD:11193|Vega:OTTHUMG00000057635 21 21q22.3 keratin associated protein 10-7 protein-coding KRTAP10-7 keratin associated protein 10-7 O high sulfur keratin-associated protein 10.7|keratin associated protein 18-7|keratin-associated protein 10-7|keratin-associated protein 18.7 20121230 -9606 386676 KRTAP10-9 - KAP10.9|KAP18.9|KRTAP18-9 HGNC:22971|Ensembl:ENSG00000221837|HPRD:11195|Vega:OTTHUMG00000057637 21 21q22.3 keratin associated protein 10-9 protein-coding KRTAP10-9 keratin associated protein 10-9 O high sulfur keratin-associated protein 10.9|keratin associated protein 18-9|keratin-associated protein 10-9|keratin-associated protein 10.9|keratin-associated protein 18-9|keratin-associated protein 18.9 20121230 -9606 386677 KRTAP10-1 - KAP10.1|KAP18-1|KAP18.1|KRTAP10.1|KRTAP18-1|KRTAP18.1 HGNC:22966|Ensembl:ENSG00000215455|HPRD:11184|Vega:OTTHUMG00000057627 21 21q22.3 keratin associated protein 10-1 protein-coding KRTAP10-1 keratin associated protein 10-1 O high sulfur keratin-associated protein 10.1|keratin-associated protein 10-1|keratin-associated protein 10.1|keratin-associated protein 18-1|keratin-associated protein 18.1 20121230 -9606 386678 KRTAP10-11 - KAP10.11|KAP18.11|KRTAP18-11|KRTAP18.11 HGNC:20528|Ensembl:ENSG00000243489|HPRD:11186|Vega:OTTHUMG00000057626 21 21q22.3 keratin associated protein 10-11 protein-coding KRTAP10-11 keratin associated protein 10-11 O high sulfur keratin-associated protein 10.11|keratin associated protein 18-11|keratin-associated protein 10-11|keratin-associated protein 10.11|keratin-associated protein 18-11|keratin-associated protein 18.11 20121230 -9606 386679 KRTAP10-2 - KAP10.2|KAP18-2|KAP18.2|KRTAP10.2|KRTAP18-2|KRTAP18.2 HGNC:22967|Ensembl:ENSG00000205445|HPRD:11188|Vega:OTTHUMG00000057625 21 21q22.3 keratin associated protein 10-2 protein-coding KRTAP10-2 keratin associated protein 10-2 O high sulfur keratin-associated protein 10.2|keratin-associated protein 10-2|keratin-associated protein 10.2|keratin-associated protein 18-2|keratin-associated protein 18.2 20121230 -9606 386680 KRTAP10-5 - KAP10.5|KAP18-5|KAP18.5|KRTAP10.5|KRTAP18-5|KRTAP18.1|KRTAP18.5 HGNC:22969|Ensembl:ENSG00000241123|HPRD:11191|Vega:OTTHUMG00000057638 21 21q22.3 keratin associated protein 10-5 protein-coding KRTAP10-5 keratin associated protein 10-5 O high sulfur keratin-associated protein 10.5|keratin-associated protein 10-5|keratin-associated protein 10.5|keratin-associated protein 18-5|keratin-associated protein 18.5 20121230 -9606 386681 KRTAP10-8 - KAP10.8|KRTAP18-8|KRTAP18.8 HGNC:20525|Ensembl:ENSG00000187766|HPRD:11194|Vega:OTTHUMG00000057632 21 21q22.3 keratin associated protein 10-8 protein-coding KRTAP10-8 keratin associated protein 10-8 O high sulfur keratin-associated protein 10.8|keratin associated protein 18-8|keratin-associated protein 10-8|keratin-associated protein 10.8|keratin-associated protein 18-8|keratin-associated protein 18.8 20121230 -9606 386682 KRTAP10-3 - KAP10.3|KAP18-3|KAP18.3|KRTAP10.3|KRTAP18-3|KRTAP18.3 HGNC:22968|Ensembl:ENSG00000212935|HPRD:11189|Vega:OTTHUMG00000057628 21 21q22.3 keratin associated protein 10-3 protein-coding KRTAP10-3 keratin associated protein 10-3 O high sulfur keratin-associated protein 10.3|keratin-associated protein 10-3|keratin-associated protein 10.3|keratin-associated protein 18-3|keratin-associated protein 18.3 20121230 -9606 386683 KRTAP12-3 - KRTAP12.3 HGNC:20531|Ensembl:ENSG00000205439|HPRD:11199|Vega:OTTHUMG00000057630 21 21q22.3 keratin associated protein 12-3 protein-coding KRTAP12-3 keratin associated protein 12-3 O high sulfur keratin-associated protein 12.3|keratin-associated protein 12-3|keratin-associated protein 12.3 20121230 -9606 386684 KRTAP12-4 - KRTAP12.4 HGNC:20532|Ensembl:ENSG00000212933|HPRD:11200|Vega:OTTHUMG00000057633 21 21q22.3 keratin associated protein 12-4 protein-coding KRTAP12-4 keratin associated protein 12-4 O high sulfur keratin-associated protein 12.4|keratin-associated protein 12-4|keratin-associated protein 12.4 20121230 -9606 386685 KRTAP10-12 - KAP10.12|KRTAP18-12|KRTAP18.12 HGNC:20533|Ensembl:ENSG00000189169|HPRD:11187|Vega:OTTHUMG00000057629 21 21q22.3 keratin associated protein 10-12 protein-coding KRTAP10-12 keratin associated protein 10-12 O high sulfur keratin-associated protein 10.12|keratin associated protein 18-12|keratin-associated protein 10-12|keratin-associated protein 10.12|keratin-associated protein 18-12|keratin-associated protein 18.12 20121230 -9606 386687 OFD1P3Y - OFD1P19|OFD1P19Y|OFD1P3|OFD1PY19|OFD1PY3|OFDYP3 HGNC:23875 Y Yp11.2 OFD1 pseudogene 3, Y-linked pseudo OFD1P3Y OFD1 pseudogene 3, Y-linked O - 20121230 -9606 386688 OFD1P4Y - OFD1P4|OFD1PY4|OFDYP4 HGNC:23876 Y Yq11.221 OFD1 pseudogene 4, Y-linked pseudo OFD1P4Y OFD1 pseudogene 4, Y-linked O - 20121209 -9606 386689 OFD1P5Y - OFD1P5|OFD1PY5|OFDYP5 HGNC:23877 Y Yq11.221 OFD1 pseudogene 5, Y-linked pseudo OFD1P5Y OFD1 pseudogene 5, Y-linked O - 20121209 -9606 386690 OFD1P6Y - OFD1P2|OFD1P6|OFD1PY6|OFDYP6 HGNC:13657 Y Yq11.22 OFD1 pseudogene 6, Y-linked pseudo OFD1P6Y OFD1 pseudogene 6, Y-linked O - 20121209 -9606 386691 OFD1P7Y - OFD1P7|OFD1PY7|OFDYP7 HGNC:23879 Y Yq11.222 OFD1 pseudogene 7, Y-linked pseudo OFD1P7Y OFD1 pseudogene 7, Y-linked O - 20121209 -9606 386692 OFD1P8Y - OFD1P8|OFD1PY8|OFDYP8 HGNC:23880 Y Yq11.223 OFD1 pseudogene 8, Y-linked pseudo OFD1P8Y OFD1 pseudogene 8, Y-linked O - 20121209 -9606 386693 OFD1P9Y - OFD1P9|OFD1PY9|OFDYP9 HGNC:23881 Y Yq11.223 OFD1 pseudogene 9, Y-linked pseudo OFD1P9Y OFD1 pseudogene 9, Y-linked O - 20121209 -9606 386694 OFD1P10Y - OFD1P10|OFD1PY10|OFDYP10 HGNC:23882 Y Yq11.223 OFD1 pseudogene 10, Y-linked pseudo OFD1P10Y OFD1 pseudogene 10, Y-linked O - 20121209 -9606 386695 OFD1P11Y - OFD1P11|OFD1PY11|OFDYP11 HGNC:23883 Y Yq11.223 OFD1 pseudogene 11, Y-linked pseudo OFD1P11Y OFD1 pseudogene 11, Y-linked O - 20121209 -9606 386696 OFD1P12Y - OFD1P12|OFD1PY12|OFDYP12 HGNC:23884 Y Yq11.223 OFD1 pseudogene 12, Y-linked pseudo OFD1P12Y OFD1 pseudogene 12, Y-linked O - 20121209 -9606 386697 OFD1P13Y - OFD1P13|OFD1PY13|OFDYP13 HGNC:23885 Y Yq11.223 OFD1 pseudogene 13, Y-linked pseudo OFD1P13Y OFD1 pseudogene 13, Y-linked O - 20121209 -9606 386698 OFD1P14Y - OFD1P14|OFD1PY14|OFDYP14 HGNC:23886 Y Yq11.23 OFD1 pseudogene 14, Y-linked pseudo OFD1P14Y OFD1 pseudogene 14, Y-linked O - 20121209 -9606 386699 OFD1P15Y - OFD1P15|OFD1PY15|OFDYP15 HGNC:23887 Y Yq11.23 OFD1 pseudogene 15, Y-linked pseudo OFD1P15Y OFD1 pseudogene 15, Y-linked O - 20121209 -9606 386724 AMIGO3 UNQ6084/PRO20089 AMIGO-3 HGNC:24075|Ensembl:ENSG00000176020|HPRD:16484|Vega:OTTHUMG00000158152 3 3p21 adhesion molecule with Ig-like domain 3 protein-coding AMIGO3 adhesion molecule with Ig-like domain 3 O alivin-3|amphoterin-induced gene and ORF 3|amphoterin-induced protein 3 20121230 -9606 386725 FAM8A7P - - HGNC:23868 Y Yp11.2 family with sequence similarity 8, member A1 pseudogene pseudo FAM8A7P family with sequence similarity 8, member A7 pseudogene O - 20121230 -9606 386726 FAM8A4P - FAM8A8P HGNC:16375 Y Yq11.21 family with sequence similarity 8, member A1 pseudogene pseudo FAM8A4P family with sequence similarity 8, member A4 pseudogene O - 20121230 -9606 386727 FAM8A9P - - HGNC:23870 Y Yq11.222 family with sequence similarity 8, member A1 pseudogene pseudo FAM8A9P family with sequence similarity 8, member A9 pseudogene O - 20121230 -9606 386728 FAM8A10P - - HGNC:23871 Y Yq11.223 family with sequence similarity 8, member A1 pseudogene pseudo FAM8A10P family with sequence similarity 8, member A10 pseudogene O - 20121209 -9606 386729 CDY4P - - HGNC:23872 Y Yq11.2 chromodomain protein, Y-linked 4 pseudogene pseudo CDY4P chromodomain protein, Y-linked 4 pseudogene O - 20121230 -9606 386730 CDY6P - - HGNC:23853 Y Yq11.221 chromodomain protein, Y-linked 6 pseudogene pseudo CDY6P chromodomain protein, Y-linked 6 pseudogene O - 20121209 -9606 386731 CDY7P - - HGNC:23854 Y Yq11.221 chromodomain protein, Y-linked 7 pseudogene pseudo CDY7P chromodomain protein, Y-linked 7 pseudogene O - 20121209 -9606 386732 CDY8P - - HGNC:23855 Y Yq11.221 chromodomain protein, Y-linked 8 pseudogene pseudo CDY8P chromodomain protein, Y-linked 8 pseudogene O - 20121207 -9606 386734 CDY12P - - HGNC:23856 Y Yq11.223 chromodomain protein, Y-linked 12 pseudogene pseudo CDY12P chromodomain protein, Y-linked 12 pseudogene O - 20121209 -9606 386735 CDY13P - - HGNC:23857 Y Yq11.223 chromodomain protein, Y-linked 13 pseudogene pseudo CDY13P chromodomain protein, Y-linked 13 pseudogene O - 20121209 -9606 386736 CDY14P - - HGNC:23858 Y Yq11.223 chromodomain protein, Y-linked 14 pseudogene pseudo CDY14P chromodomain protein, Y-linked 14 pseudogene O - 20121209 -9606 386737 CDY15P - - HGNC:23859 Y Yq11.223 chromodomain protein, Y-linked 15 pseudogene pseudo CDY15P chromodomain protein, Y-linked 15 pseudogene O - 20121209 -9606 386738 CDY16P - - HGNC:23860 Y Yq11.223 chromodomain protein, Y-linked 16 pseudogene pseudo CDY16P chromodomain protein, Y-linked 16 pseudogene O - 20121209 -9606 386739 CDY17P - - HGNC:23861 Y Yq11.223 chromodomain protein, Y-linked 17 pseudogene pseudo CDY17P chromodomain protein, Y-linked 17 pseudogene O - 20121230 -9606 386740 CDY18P - - HGNC:23862 Y Yq11.223 chromodomain protein, Y-linked 18 pseudogene pseudo CDY18P chromodomain protein, Y-linked 18 pseudogene O - 20121209 -9606 386741 CDY19P - - HGNC:23863 Y Yq11.223 chromodomain protein, Y-linked 19 pseudogene pseudo CDY19P chromodomain protein, Y-linked 19 pseudogene O - 20121209 -9606 386742 CDY20P - - HGNC:23864 Y Yq11.223 chromodomain protein, Y-linked 20 pseudogene pseudo CDY20P chromodomain protein, Y-linked 20 pseudogene O - 20121209 -9606 386743 CDY21P - - HGNC:23865 Y Yq11.223 chromodomain protein, Y-linked 21 pseudogene pseudo CDY21P chromodomain protein, Y-linked 21 pseudogene O - 20121209 -9606 386744 CDY22P - - HGNC:23866 Y Yq11.223 chromodomain protein, Y-linked 22 pseudogene pseudo CDY22P chromodomain protein, Y-linked 22 pseudogene O - 20121209 -9606 386745 CDY23P - - HGNC:23867 Y Yq11.23 chromodomain protein, Y-linked 23 pseudogene pseudo CDY23P chromodomain protein, Y-linked 23 pseudogene O - 20121209 -9606 386746 MRGPRG - GPR169|MRGG HGNC:24829|MIM:607234|Ensembl:ENSG00000182170|Vega:OTTHUMG00000011709 11 11p15.4 MAS-related GPR, member G protein-coding MRGPRG MAS-related GPR, member G O G protein-coupled receptor 169|G protein-coupled receptor MRGG|mas-related G-protein coupled receptor member G 20121230 -9606 386757 SLC6A10P - CT-2|CT2|SLC6A10|SLC6A10pB HGNC:11043|HPRD:13479 16 16p11.2 solute carrier family 6 (neurotransmitter transporter, creatine), member 10, pseudogene pseudo SLC6A10P solute carrier family 6 (neurotransmitter transporter, creatine), member 10, pseudogene O similar to sodium- and chloride-dependent creatine transporter 20121230 -9606 386758 ZNF582-AS1 - - HGNC:25213 19 19q13.43 ZNF582 antisense RNA 1 (head to head) miscRNA ZNF582-AS1 ZNF582 antisense RNA 1 (head to head) O - 20121230 -9606 387032 ZKSCAN4 - P1P373C6|ZNF307|ZNF427|p373c6.1 HGNC:13854|MIM:611643|Ensembl:ENSG00000187626|HPRD:15768|Vega:OTTHUMG00000014511 6 6p21 zinc finger with KRAB and SCAN domains 4 protein-coding ZKSCAN4 zinc finger with KRAB and SCAN domains 4 O p373c6.1 (novel C2H2 type zinc finger protein)|zinc finger protein 307|zinc finger protein 427|zinc finger protein with KRAB and SCAN domains 4 20121230 -9606 387036 GUSBP2 - GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp HGNC:18792 6 6p21 glucuronidase, beta pseudogene 2 pseudo GUSBP2 glucuronidase, beta pseudogene 2 O - 20121230 -9606 387039 HTATSF1P1 - HTATSF1P|TAT-SF1-L|dJ1033B10.6 HGNC:13959 6 6p21 HIV-1 Tat specific factor 1 pseudogene 1 pseudo HTATSF1P1 HIV-1 Tat specific factor 1 pseudogene 1 O - 20100622 -9606 387043 RPL13AP - RPL13A_5_675|dJ271M21.3 HGNC:13977 6 6p21.3 ribosomal protein L13a pseudogene pseudo RPL13AP ribosomal protein L13a pseudogene O - 20121230 -9606 387044 RPL13P - BBC1p|RPL13_3_673|dJ111M5.1 HGNC:13978 6 6p21 ribosomal protein L13 pseudogene pseudo RPL13P ribosomal protein L13 pseudogene O - 20121230 -9606 387046 RPL8P1 - RPL2p|RPL8P|dJ15D7.1 HGNC:13980 6 6p21 ribosomal protein L8 pseudogene 1 pseudo RPL8P1 ribosomal protein L8 pseudogene 1 O - 20121230 -9606 387055 LINC00533 - C6orf38|C6orf39|bA373N24.1 HGNC:18690 6 6p21 long intergenic non-protein coding RNA 533 unknown LINC00533 long intergenic non-protein coding RNA 533 O - 20120508 -9606 387063 HMGA1P5 - HMGA1L5 HGNC:19120 10 10q22.2 high mobility group AT-hook 1 pseudogene 5 pseudo HMGA1P5 high mobility group AT-hook 1 pseudogene 5 O - 20121230 -9606 387065 HMGA1P7 - HMGA1L7 HGNC:19122 6 6q23.2 high mobility group AT-hook 1 pseudogene 7 pseudo HMGA1P7 high mobility group AT-hook 1 pseudogene 7 O - 20121230 -9606 387066 SNHG5 - C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 HGNC:21026|MIM:613263 6 6q14.3 small nucleolar RNA host gene 5 (non-protein coding) miscRNA SNHG5 small nucleolar RNA host gene 5 (non-protein coding) O - 20121230 -9606 387071 FAM136BP RP1-40E16.9 C6orf87|FAM136B|dJ40E16.3 HGNC:21110 6 6p25.2 family with sequence similarity 136, member B, pseudogene pseudo FAM136BP family with sequence similarity 136, member B, pseudogene O - 20121230 -9606 387074 RPL35AP3 RP11-55K22.3 RPL35A_7_760|bA55K22.4 HGNC:21117 6 6q23.3 ribosomal protein L35a pseudogene 3 pseudo RPL35AP3 ribosomal protein L35a pseudogene 3 O - 20121230 -9606 387082 SUMO4 - IDDM5|SMT3H4|SUMO-4|dJ281H8.4 HGNC:21181|MIM:608829|Ensembl:ENSG00000177688|HPRD:10584|Vega:OTTHUMG00000015785 6 6q25 SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae) protein-coding SUMO4 SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae) O SMT3 suppressor of mif two 3 homolog 2|small ubiquitin-like modifier 4 protein|small ubiquitin-related modifier 4 20121230 -9606 387090 RPL36AP5 RP11-256G5.1 RPL36A_9_691|bA256G5.1 HGNC:21258 6 6p21.1 ribosomal protein L36a pseudogene 5 pseudo RPL36AP5 ribosomal protein L36a pseudogene 5 O - 20121230 -9606 387097 C6orf147 - - HGNC:21363 6 6q13 chromosome 6 open reading frame 147 miscRNA C6orf147 chromosome 6 open reading frame 147 O - 20121230 -9606 387101 RPL29P4 RP11-632C17__A.1 RPL29P3|RPL29_6_745|bA632C17A.1 HGNC:21482 6 6q22.2 ribosomal protein L29 pseudogene 4 pseudo RPL29P4 ribosomal protein L29 pseudogene 4 O - 20121230 -9606 387103 CENPW - C6orf173|CUG2 HGNC:21488|MIM:611264|Ensembl:ENSG00000203760|HPRD:16660|Vega:OTTHUMG00000015518 6 6q22.32 centromere protein W protein-coding CENPW centromere protein W O CENP-W|cancer-up-regulated gene 2 protein|cancer-upregulated gene 2 20121230 -9606 387104 SOGA3 - C6orf174|dJ403A15.3 HGNC:21494|Ensembl:ENSG00000214338|Ensembl:ENSG00000255330|HPRD:16661|Vega:OTTHUMG00000015528 6 6q22.33 SOGA family member 3 protein-coding SOGA3 SOGA family member 3 O protein SOGA3 20121230 -9606 387107 ATP5J2P2 - bA249L21.4 HGNC:21540 6 6q21 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 2 pseudo ATP5J2P2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 2 O - 20121230 -9606 387111 LINC00222 RP3-354J5.2 C6orf181|NCRNA00222|dJ354J5.2 HGNC:21560 6 - long intergenic non-protein coding RNA 222 miscRNA LINC00222 long intergenic non-protein coding RNA 222 O - 20121230 -9606 387117 UBQLN1P1 - UBQLN1P HGNC:21633 6 6p22.1 ubiquilin 1 pseudogene 1 pseudo UBQLN1P1 ubiquilin 1 pseudogene 1 O - 20121230 -9606 387119 CEP85L RP11-57K17.2 C6orf204|NY-BR-15|bA57K17.2 HGNC:21638|Ensembl:ENSG00000111860|HPRD:12874|Vega:OTTHUMG00000015465 6 6q22 centrosomal protein 85kDa-like protein-coding CEP85L centrosomal protein 85kDa-like O centrosomal protein of 85 kDa-like|serologically defined breast cancer antigen NY-BR-15 20121230 -9606 387122 WASF5P XXbac-BPG248L24.7 - HGNC:21665 6 6p21.33 WAS protein family, member 5, pseudogene pseudo WASF5P WAS protein family, member 5, pseudogene O - 20121230 -9606 387129 NPSR1 - ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 HGNC:23631|MIM:608595|Ensembl:ENSG00000187258|HPRD:10547|Vega:OTTHUMG00000099383 7 7p14.3 neuropeptide S receptor 1 protein-coding NPSR1 neuropeptide S receptor 1 O G protein-coupled receptor 154|G protein-coupled receptor for asthma susceptibility|G-protein coupled receptor 154|G-protein coupled receptor PGR14|G-protein coupled receptor for asthma susceptibility|neuropeptide S receptor|vasopressin receptor-related receptor 1 20121230 -9606 387254 SLC7A5P2 - IMAA|MMAA HGNC:24951|HPRD:13738 16 16p12.2 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo SLC7A5P2 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 O - 20121230 -9606 387263 C6orf120 - bA160E12.4 HGNC:21247|Ensembl:ENSG00000185127|Vega:OTTHUMG00000016057 6 6q27 chromosome 6 open reading frame 120 protein-coding C6orf120 chromosome 6 open reading frame 120 O UPF0669 protein C6orf120 20121230 -9606 387264 KRTAP5-1 - KRN1L|KRTAP5.1 HGNC:23596|MIM:148022|Ensembl:ENSG00000205869|HPRD:13948|Vega:OTTHUMG00000057557 11 11p15.5 keratin associated protein 5-1 protein-coding KRTAP5-1 keratin associated protein 5-1 O keratin-associated protein 5-1|keratin-associated protein 5.1|ultrahigh sulfur keratin-associated protein 5.1 20121230 -9606 387266 KRTAP5-3 - KRTAP5-9|KRTAP5.3 HGNC:23598|Ensembl:ENSG00000196224|HPRD:12395|Vega:OTTHUMG00000057559 11 11p15.5 keratin associated protein 5-3 protein-coding KRTAP5-3 keratin associated protein 5-3 O keratin-associated protein 5-3|keratin-associated protein 5-9|keratin-associated protein 5.3|keratin-associated protein 5.9|ultrahigh sulfur keratin-associated protein 5.3 20121230 -9606 387267 KRTAP5-4 - KRTAP5.4 HGNC:23599|Ensembl:ENSG00000241598|HPRD:12396|Vega:OTTHUMG00000057553 11 11p15.5 keratin associated protein 5-4 protein-coding KRTAP5-4 keratin associated protein 5-4 O keratin-associated protein 5-4|keratin-associated protein 5.4|ultrahigh sulfur keratin-associated protein 5.4 20121230 -9606 387273 KRTAP5-10 - KRTAP5.10 HGNC:23605|Ensembl:ENSG00000204572|HPRD:12394|Vega:OTTHUMG00000057585 11 11q13.4 keratin associated protein 5-10 protein-coding KRTAP5-10 keratin associated protein 5-10 O keratin-associated protein 5-10|keratin-associated protein 5.10|ultrahigh sulfur keratin-associated protein 5.10 20121230 -9606 387275 KRTAP5-13P - KRTAP5.P1|KRTAP5P1 HGNC:23607 11 11q13.4 keratin associated protein 5-13, pseudogene pseudo KRTAP5-13P keratin associated protein 5-13, pseudogene O - 20121230 -9606 387276 KRTAP5-14P - KRTAP5.P2|KRTAP5P2 HGNC:23608 11 11q13.4 keratin associated protein 5-14, pseudogene pseudo KRTAP5-14P keratin associated protein 5-14, pseudogene O - 20121230 -9606 387281 LCRB - - MIM:152424 11 11p15.5 locus control region, beta other - - - - 20121220 -9606 387315 MTND2P1 - - HGNC:7457 21 21q22.12 MT-ND2 pseudogene 1 pseudo MTND2P1 MT-ND2 pseudogene 1 O - 20121230 -9606 387316 VN1R10P hCG_1820928 FKSG83|VNR6I1P|b24o18.2|hs6V1-1p HGNC:13550 6 6p22.1 vomeronasal 1 receptor 10 pseudogene pseudo VN1R10P vomeronasal 1 receptor 10 pseudogene O - 20121230 -9606 387317 VN1R11P - VNR6I2P|dJ86C11.7|hs6V1-2p HGNC:13551 6 6p21 vomeronasal 1 receptor 11 pseudogene pseudo VN1R11P vomeronasal 1 receptor 11 pseudogene O - 20121230 -9606 387319 HIST1H2APS1 - H2AFSP|bA317E16.5 HGNC:18720 6 6p22.2 histone cluster 1, H2a, pseudogene 1 pseudo HIST1H2APS1 histone cluster 1, H2a, pseudogene 1 O - 20121230 -9606 387320 VN1R14P - VNR6I5P|bA457M11.4|hs6M1-5p HGNC:18721 6 6p22-p21 vomeronasal 1 receptor 14 pseudogene pseudo VN1R14P vomeronasal 1 receptor 14 pseudogene O - 20121230 -9606 387321 VN1R12P - VNR6I3P|bA373D17.2|hs6V1-3p HGNC:18722 6 6p21 vomeronasal 1 receptor 12 pseudogene pseudo VN1R12P vomeronasal 1 receptor 12 pseudogene O - 20121230 -9606 387322 VN1R13P - VNR6I4P|bA373D17.3|hs6V1-4p HGNC:18723 6 6p21 vomeronasal 1 receptor 13 pseudogene pseudo VN1R13P vomeronasal 1 receptor 13 pseudogene O - 20121230 -9606 387323 HIST1H2APS3 - H2AFUP|dJ34B20.8 HGNC:18805 6 6p22.1 histone cluster 1, H2a, pseudogene 3 pseudo HIST1H2APS3 histone cluster 1, H2a, pseudogene 3 O - 20121230 -9606 387325 HIST1H1PS1 - H1F6P|dJ34B20.16 HGNC:19163 6 6p22.1 histone cluster 1, H1, pseudogene 1 pseudo HIST1H1PS1 histone cluster 1, H1, pseudogene 1 O - 20121230 -9606 387328 ZNF322P1 - ZNF322|ZNF322B HGNC:14003|HPRD:15771 9 9q22.33 zinc finger protein 322 pseudogene 1 pseudo ZNF322P1 zinc finger protein 322 pseudogene 1 O - 20121230 -9606 387332 TBPL2 - TBP2|TRF3 HGNC:19841|MIM:608964|Ensembl:ENSG00000182521|HPRD:10607|Vega:OTTHUMG00000140313 14 14q22.3 TATA box binding protein like 2 protein-coding TBPL2 TATA box binding protein like 2 O TATA box-binding protein-like protein 2|TATA box-binding protein-related factor 3|TBP-like protein 2|TBP-related factor 3 20121230 -9606 387338 NSUN4 - RP4-603I14.2|SHTAP HGNC:31802|Ensembl:ENSG00000117481|HPRD:14842|Vega:OTTHUMG00000007808 1 1p34 NOP2/Sun domain family, member 4 protein-coding NSUN4 NOP2/Sun domain family, member 4 O NOL1/NOP2/Sun domain family member 4|putative methyltransferase NSUN4|sperm head and tail associated protein 20121230 -9606 387357 THEMIS - C6orf190|C6orf207|GASP|SPOT|TSEPA|bA325O24.3|bA325O24.4 HGNC:21569|MIM:613607|Ensembl:ENSG00000172673|HPRD:16662|Vega:OTTHUMG00000015534 6 6q22.33 thymocyte selection associated protein-coding THEMIS thymocyte selection associated O GRB2-associated protein|protein THEMIS|signaling phosphoprotein specific for T cells|thymocyte expressed molecule involved in selection|thymocyte selection pathway associated|thymocyte-expressed molecule involved in selection 20121230 -9606 387359 USP9YP4 - - HGNC:37740 Y Yp11.2 ubiquitin specific peptidase 9, Y-linked pseudogene 4 pseudo USP9YP4 ubiquitin specific peptidase 9, Y-linked pseudogene 4 O - 20121230 -9606 387361 USP9YP34 - - HGNC:38778 Y Yq11.221 ubiquitin specific peptidase 9, Y-linked pseudogene 34 pseudo USP9YP34 ubiquitin specific peptidase 9, Y-linked pseudogene 34 O - 20121209 -9606 387362 USP9YP1 - - HGNC:31741 Y Yq11.221 ubiquitin specific peptidase 9, Y-linked pseudogene 1 pseudo USP9YP1 ubiquitin specific peptidase 9, Y-linked pseudogene 1 O - 20121209 -9606 387363 USP9YP2 - - HGNC:31742 Y Yq11.221-q11.222 ubiquitin specific peptidase 9, Y-linked pseudogene 2 pseudo USP9YP2 ubiquitin specific peptidase 9, Y-linked pseudogene 2 O - 20121209 -9606 387364 USP9YP3 - - HGNC:37739 Y Yq11.223 ubiquitin specific peptidase 9, Y-linked pseudogene 3 pseudo USP9YP3 ubiquitin specific peptidase 9, Y-linked pseudogene 3 O - 20121209 -9606 387486 LINC00320 - C21orf131|NCRNA00320|PRED14 HGNC:19690 21 21q21.1 long intergenic non-protein coding RNA 320 miscRNA LINC00320 long intergenic non-protein coding RNA 320 O - 20121230 -9606 387491 GAPDHP16 - GAPDP16 HGNC:23768 21 21q11.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene 16 pseudo GAPDHP16 glyceraldehyde-3-phosphate dehydrogenase pseudogene 16 O - 20121230 -9606 387492 DSTNP1 - - HGNC:23769 21 21q22.3 destrin (actin depolymerizing factor) pseudogene 1 pseudo DSTNP1 destrin (actin depolymerizing factor) pseudogene 1 O - 20121230 -9606 387494 RPL18AP2 - - HGNC:23774 21 21q22.3 ribosomal protein L18a pseudogene 2 pseudo RPL18AP2 ribosomal protein L18a pseudogene 2 O - 20121230 -9606 387495 RPS26P5 - RPS26_31_1718 HGNC:23776 21 21q21.1 ribosomal protein S26 pseudogene 5 pseudo RPS26P5 ribosomal protein S26 pseudogene 5 O - 20121230 -9606 387496 RASL11A - - HGNC:23802|MIM:612403|Ensembl:ENSG00000122035|HPRD:17956|Vega:OTTHUMG00000016627 13 13q12.2 RAS-like, family 11, member A protein-coding RASL11A RAS-like, family 11, member A O ras-like protein family member 11A 20121230 -9606 387503 HCG4P1 - HCGIV-01 HGNC:30978 6 6p21.3 HLA complex group 4 pseudogene 1 pseudo HCG4P1 HLA complex group 4 pseudogene 1 O - 20070912 -9606 387504 HCG4P2 - HCGIV-02 HGNC:30979 6 6p21.3 HLA complex group 4 pseudogene 2 pseudo HCG4P2 HLA complex group 4 pseudogene 2 O - 20070912 -9606 387505 HCG9P1 - HCGIX-1 HGNC:30980 6 6p21.3 HLA complex group 9 pseudogene 1 pseudo HCG9P1 HLA complex group 9 pseudogene 1 O - 20090331 -9606 387506 HCG9P2 - HCGIX-2 HGNC:30981 6 6p21.3 HLA complex group 9 pseudogene 2 pseudo HCG9P2 HLA complex group 9 pseudogene 2 O - 20090331 -9606 387507 HCG9P3 - HCGIX-3.2 HGNC:30982 6 6p21.3 HLA complex group 9 pseudogene 3 pseudo HCG9P3 HLA complex group 9 pseudogene 3 O - 20090331 -9606 387509 GPR153 - PGR1 HGNC:23618|MIM:614269|Ensembl:ENSG00000158292|HPRD:13600|Vega:OTTHUMG00000001272 1 1p36.31 G protein-coupled receptor 153 protein-coding GPR153 G protein-coupled receptor 153 O G-protein coupled receptor PGR1|probable G-protein coupled receptor 153 20121230 -9606 387521 TMEM189 RP5-1185N5.1 KUA HGNC:16735|MIM:610994|Ensembl:ENSG00000240849|HPRD:17257|Vega:OTTHUMG00000152625 20 20q13.2 transmembrane protein 189 protein-coding TMEM189 transmembrane protein 189 O - 20121230 -9606 387522 TMEM189-UBE2V1 - CROC-1B|CROC1B|KUA-UEV HGNC:33521|Ensembl:ENSG00000124208|Ensembl:ENSG00000240849|HPRD:04294|HPRD:11926|Vega:OTTHUMG00000033085 20 20q13.2 TMEM189-UBE2V1 readthrough protein-coding TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough O TMEM189-UBE2V1 fusion protein|TMEM189-UBE2V1 readthrough transcript|transmembrane protein 189-ubiquitin-conjugating enzyme E2 variant 1 read-through 20121230 -9606 387535 HCRP1 - - - 6 6p21.1 hepatocellular carcinoma-related HCRP1 unknown - - - - 20121209 -9606 387553 DNM1P18 - DNM1DN18 HGNC:21135 22 22q13.2 DNM1 pseudogene 18 pseudo DNM1P18 DNM1 pseudogene 18 O - 20121230 -9606 387554 DNM1P19 - DNM1DN19 HGNC:21136 12 12q23.1 DNM1 pseudogene 19 pseudo DNM1P19 DNM1 pseudogene 19 O - 20121230 -9606 387559 FGF7P1 - HsT283 HGNC:21455 18 18p11.21 fibroblast growth factor 7 pseudogene 1 pseudo FGF7P1 fibroblast growth factor 7 pseudogene 1 O - 20121230 -9606 387569 ACF - - MIM:125520 22 22q11 Asymmetric crying facies (Cayler cardiofacial syndrome) unknown - - - - 20120622 -9606 387570 DUH - - MIM:127500 6 6q24.2-q25.2 Dyschromatosis universalis hereditaria unknown - - - - 20120622 -9606 387572 PAND1 - PAND MIM:167870 13 13q22-q32 Panic disorder 1 unknown - - - - 20120622 -9606 387573 CHDS3 - - MIM:300464 X Xq23-q26 Coronary heart disease, susceptibility to, 3 unknown - - - - 20120622 -9606 387574 CMTDI2 - - MIM:606483 10 10q24.1-q25.1 Charcot-Marie-Tooth disease, dominant intermediate 2 unknown - - - - 20120622 -9606 387575 HYT3 - - MIM:607329 2 2p25-p24 Hypertension, essential, susceptibility to, 3 unknown - - - - 20120622 -9606 387576 MGR5 - - MIM:607508 19 19p13 Migraine with or without aura, susceptibility to, 5 unknown - - - - 20120622 -9606 387577 AUTS3 - - MIM:608049 13 13q14.2-q14.1 Autism, susceptibility to, 3 unknown - - - - 20120622 -9606 387578 AITD1 - - MIM:608173 6 6p11 Autoimmune thyroid disease, susceptibility to, 1 unknown - - - - 20120622 -9606 387579 AITD2 - - MIM:608174 5 5q31-q33 Autoimmune thyroid disease, susceptibility to, 2 unknown - - - - 20120622 -9606 387581 AITD4 - - MIM:608176 10 10q Autoimmune thyroid disease, susceptibility to, 4 unknown - - - - 20120622 -9606 387582 KAZA - - MIM:608207 22 22q12 Kala-azar (visceral leishmaniasis), susceptibility to unknown - - - - 20120622 -9606 387583 SPG25 - - HGNC:25855|MIM:608220 6 6q23-q24.1 spastic paraplegia 25 (autosomal recessive, with disc herniation) unknown SPG25 spastic paraplegia 25 (autosomal recessive, with disc herniation) O - 20120622 -9606 387584 CHDS2 - - MIM:608316 2 2q21.1-q22 Coronary heart disease, susceptibility to, 2 unknown - - - - 20120622 -9606 387585 CHDS4 - - MIM:608318 14 14q32 Coronary heart disease, susceptibility to, 4 unknown - - - - 20120622 -9606 387590 TPTEP1 - psiTPTE22 HGNC:43648 22 22q11.1 transmembrane phosphatase with tensin homology pseudogene 1 pseudo TPTEP1 transmembrane phosphatase with tensin homology pseudogene 1 O - 20121230 -9606 387597 ILDR2 - C1orf32|RP4-782G3.2|dJ782G3.1 HGNC:18131|Ensembl:ENSG00000143195|HPRD:12724|Vega:OTTHUMG00000034320 1 1q24.1 immunoglobulin-like domain containing receptor 2 protein-coding ILDR2 immunoglobulin-like domain containing receptor 2 O immunoglobulin-like domain-containing receptor 2 20121230 -9606 387601 SLC22A25 - HIMTP|UST6 HGNC:32935|MIM:610792|Ensembl:ENSG00000196600|HPRD:14198|Vega:OTTHUMG00000165340 11 11q12.3 solute carrier family 22, member 25 protein-coding SLC22A25 solute carrier family 22, member 25 O organic anion transporter UST6|putative UST1-like organic anion transporter|solute carrier family 22 member 25 20121230 -9606 387612 RAC1P1 - HsT2789 HGNC:31001 18 18q11.2 ras-related C3 botulinum toxin substrate 1 pseudogene 1 pseudo RAC1P1 ras-related C3 botulinum toxin substrate 1 pseudogene 1 O - 20121230 -9606 387615 MAP1LC3P - HsT312 HGNC:31004 18 18q21.2 microtubule-associated protein 1 light chain 3 pseudogene pseudo MAP1LC3P microtubule-associated protein 1 light chain 3 pseudogene O - 20121230 -9606 387628 KGFLP1 - - HPRD:13402 9 9p11.2 fibroblast growth factor 7 pseudogene pseudo - - - - 20121230 -9606 387638 C10orf113 - bA165O3.1 HGNC:31447|Ensembl:ENSG00000204683|HPRD:16573|Vega:OTTHUMG00000017786 10 10p12.31 chromosome 10 open reading frame 113 protein-coding C10orf113 chromosome 10 open reading frame 113 O putative uncharacterized protein C10orf113 20121230 -9606 387640 SKIDA1 - C10orf140|DLN-1 HGNC:32697|Ensembl:ENSG00000180592|HPRD:16981|Vega:OTTHUMG00000017797 10 10p12.31 SKI/DACH domain containing 1 protein-coding SKIDA1 SKI/DACH domain containing 1 O SKI/DACH domain-containing protein 1|protein DLN-1 20121230 -9606 387642 C10orf115 - bA215C7.4 HGNC:31449 10 10p12.2 chromosome 10 open reading frame 115 unknown C10orf115 chromosome 10 open reading frame 115 O - 20121216 -9606 387644 LINC00202-1 - C10orf51|LINC00202|NCRNA00202|bB27G4.1 HGNC:24672 10 10p12.1 long intergenic non-protein coding RNA 202-1 miscRNA LINC00202-1 long intergenic non-protein coding RNA 202-1 O - 20121230 -9606 387646 LRRC37A6P - - HGNC:33746|HPRD:17363 10 10p12.1 leucine rich repeat containing 37, member A6, pseudogene pseudo LRRC37A6P leucine rich repeat containing 37, member A6, pseudogene O - 20121230 -9606 387647 PTCHD3P1 - - HGNC:44945 10 10p11.23 patched domain containing 3 pseudogene 1 pseudo PTCHD3P1 patched domain containing 3 pseudogene 1 O - 20121230 -9606 387680 FAM21A RP11-56A21.1 bA56A21.1 HGNC:23416|Ensembl:ENSG00000099290|HPRD:17364|Vega:OTTHUMG00000018225 10 10q11.23 family with sequence similarity 21, member A protein-coding FAM21A family with sequence similarity 21, member A O WASH complex subunit FAM21A 20121230 -9606 387684 ARL4P - ARL4B HGNC:17741 10 10q21.2 ADP-ribosylation factor-like 4 pseudogene pseudo ARL4P ADP-ribosylation factor-like 4 pseudogene O - 20121230 -9606 387694 SH2D4B RP11-514F8.1 - HGNC:31440|Ensembl:ENSG00000178217|HPRD:18050|Vega:OTTHUMG00000018617 10 10q23.1 SH2 domain containing 4B protein-coding SH2D4B SH2 domain containing 4B O SH2 domain-containing protein 4B|novel SH2 domain-containing protein 20121230 -9606 387695 C10orf99 UNQ1833/PRO3446 UNQ1833 HGNC:31428|Ensembl:ENSG00000188373|HPRD:12599|Vega:OTTHUMG00000018635 10 10q23.1 chromosome 10 open reading frame 99 protein-coding C10orf99 chromosome 10 open reading frame 99 O RLLV1833|putative uncharacterized protein C10orf99 20121230 -9606 387700 SLC16A12 RP11-168O10.10-001 CJMG|MCT12 HGNC:23094|MIM:611910|Ensembl:ENSG00000152779|HPRD:17365|Vega:OTTHUMG00000018714 10 10q23.31 solute carrier family 16, member 12 (monocarboxylic acid transporter 12) protein-coding SLC16A12 solute carrier family 16, member 12 (monocarboxylic acid transporter 12) O monocarboxylate transporter 12 20121230 -9606 387703 LOC387703 - - - 10 10q23.33 x-ray repair cross-complementing protein 6-like pseudo - - - - 20121230 -9606 387707 CC2D2B RP11-248J23.4 C10orf130|bA248J23.4 HGNC:31666|Ensembl:ENSG00000188649|HPRD:16578|Vega:OTTHUMG00000018820 10 10q24.1 coiled-coil and C2 domain containing 2B protein-coding CC2D2B coiled-coil and C2 domain containing 2B O protein CC2D2B 20121230 -9606 387712 ENO4 - AC023283.3|C10orf134 HGNC:31670|Ensembl:ENSG00000188316|Vega:OTTHUMG00000019113 10 10q25.3 enolase family member 4 protein-coding ENO4 enolase family member 4 O enolase-like protein ENO4 20121230 -9606 387715 ARMS2 - ARMD8 HGNC:32685|MIM:611313|Ensembl:ENSG00000254636|Vega:OTTHUMG00000048232 10 10q26.13 age-related maculopathy susceptibility 2 protein-coding ARMS2 age-related maculopathy susceptibility 2 O age-related maculopathy susceptibility protein 2 20121230 -9606 387718 TEX36 - C10orf122|bA383C5.1 HGNC:31653|Ensembl:ENSG00000175018|Vega:OTTHUMG00000019229 10 10q26.13 testis expressed 36 protein-coding TEX36 testis expressed 36 O testis-expressed sequence 36 protein 20121230 -9606 387720 LOC387720 - - HPRD:18373 10 10q26.2 uncharacterized LOC387720 unknown - - - - 20121230 -9606 387723 LOC387723 - - - 10 10q26.3 uncharacterized LOC387723 miscRNA - - - - 20121230 -9606 387733 IFITM5 - BRIL|DSPA1|Hrmp1|OI5|fragilis4 HGNC:16644|MIM:614757|Ensembl:ENSG00000206013|Vega:OTTHUMG00000165355 11 11p15.5 interferon induced transmembrane protein 5 protein-coding IFITM5 interferon induced transmembrane protein 5 O bone-restricted ifitm-like protein|bone-restricted interferon-induced transmembrane protein-like protein|dispanin subfamily A member 1|interferon-induced transmembrane protein 5 20121230 -9606 387742 FAM99A - - HGNC:32368|HPRD:18440 11 11p15.5 family with sequence similarity 99, member A (non-protein coding) miscRNA FAM99A family with sequence similarity 99, member A (non-protein coding) O - 20121230 -9606 387745 FAM86GP - - HGNC:42358 11 11p15.4 family with sequence similarity 86, member A pseudogene pseudo FAM86GP family with sequence similarity 86, member G, pseudogene O - 20121230 -9606 387747 OR52B3P - - HGNC:15208 11 11p15.4 olfactory receptor, family 52, subfamily B, member 3 pseudogene pseudo OR52B3P olfactory receptor, family 52, subfamily B, member 3 pseudogene O - 20121230 -9606 387748 OR56B1 - OR11-65|OR56B1P HGNC:15245|Ensembl:ENSG00000181023|HPRD:17748|Vega:OTTHUMG00000066891 11 11p15.4 olfactory receptor, family 56, subfamily B, member 1 protein-coding OR56B1 olfactory receptor, family 56, subfamily B, member 1 O olfactory receptor 56B1|olfactory receptor OR11-65|olfactory receptor, family 56, subfamily B, member 1 pseudogene 20121230 -9606 387751 GVINP1 - GVIN1|GVIN1P|VLIG-1|VLIG1 HGNC:25813 11 11p15.4 GTPase, very large interferon inducible pseudogene 1 pseudo GVINP1 GTPase, very large interferon inducible pseudogene 1 O - 20121230 -9606 387753 RPL21P97 - RPL21_40_1120 HGNC:36223 11 11p15.4 ribosomal protein L21 pseudogene 97 pseudo RPL21P97 ribosomal protein L21 pseudogene 97 O - 20121230 -9606 387755 INSC - - HGNC:33116|MIM:610668|Ensembl:ENSG00000188487|Vega:OTTHUMG00000165838 11 11p15.2 inscuteable homolog (Drosophila) protein-coding INSC inscuteable homolog (Drosophila) O protein inscuteable homolog 20121230 -9606 387758 FIBIN PSEC0235 - HGNC:33747|Ensembl:ENSG00000176971|HPRD:17366|Vega:OTTHUMG00000166120 11 11p14.2 fin bud initiation factor homolog (zebrafish) protein-coding FIBIN fin bud initiation factor homolog (zebrafish) O fin bud initiation factor homolog 20121230 -9606 387763 C11orf96 - AG2 HGNC:38675|Ensembl:ENSG00000187479|Vega:OTTHUMG00000166555 11 11p11.2 chromosome 11 open reading frame 96 protein-coding C11orf96 chromosome 11 open reading frame 96 O protein Ag2 homolog|uncharacterized protein C11orf96 20121230 -9606 387770 LOC387770 - - - 11 11p11.12 ring finger protein 18-like pseudogene pseudo - - - - 20121230 -9606 387775 SLC22A10 - OAT5|hOAT5 HGNC:18057|MIM:607580|Ensembl:ENSG00000184999|Vega:OTTHUMG00000165197 11 11q12.3 solute carrier family 22, member 10 protein-coding SLC22A10 solute carrier family 22, member 10 O organic anion transporter 5|solute carrier family 22 (organic anion/cation transporter), member 10|solute carrier family 22 member 10 20121230 -9606 387778 SPDYC - RINGOC|Ringo2 HGNC:32681|MIM:614030|Ensembl:ENSG00000204710|HPRD:17367|Vega:OTTHUMG00000165611 11 11q13.1 speedy homolog C (Xenopus laevis) protein-coding SPDYC speedy homolog C (Xenopus laevis) O RINGO C|hSpy/Ringo C|rapid inducer of G2/M progression in oocytes C|speedy C|speedy protein C 20121230 -9606 387787 LIPT2 - - HGNC:37216|Ensembl:ENSG00000175536|Vega:OTTHUMG00000165646 11 11q13.4 lipoyl(octanoyl) transferase 2 (putative) protein-coding LIPT2 lipoyl(octanoyl) transferase 2 (putative) O lipoate-protein ligase B|lipoyl/octanoyl transferase|octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase|putative lipoyltransferase 2, mitochondrial|putative octanoyltransferase, mitochondrial 20121230 -9606 387791 LOC387791 - - - 11 11q13.5 mitochondrial import receptor subunit TOM20 homolog pseudo - - - - 20121209 -9606 387804 VSTM5 - C11orf90 HGNC:34443|Ensembl:ENSG00000214376|Vega:OTTHUMG00000154159 11 11q21 V-set and transmembrane domain containing 5 protein-coding VSTM5 V-set and transmembrane domain containing 5 O V-set and transmembrane domain-containing protein 5 20121230 -9606 387810 LOC387810 - - - 11 11q23.1 uncharacterized LOC387810 miscRNA - - - - 20120508 -9606 387815 OR8G3P - - HGNC:14698 11 11q24.2 olfactory receptor, family 8, subfamily G, member 3 pseudogene pseudo OR8G3P olfactory receptor, family 8, subfamily G, member 3 pseudogene O - 20121230 -9606 387820 LOC387820 - - - 11 11q24.3 DnaJ (Hsp40) homolog, subfamily B, member 7 pseudogene pseudo - - - - 20121230 -9606 387836 CLEC2A UNQ5792/PRO19597 KACL|PILAR|UNQ5792 HGNC:24191|MIM:612087|Ensembl:ENSG00000188393|HPRD:16720|Vega:OTTHUMG00000140393 12 12p13.31 C-type lectin domain family 2, member A protein-coding CLEC2A C-type lectin domain family 2, member A O C-type lectin domain family 2 member A|INPE5792|keratinocyte-associated C-type lectin|proliferation-induced lymphocyte-associated receptor 20121230 -9606 387837 CLEC12B UNQ5782/PRO16089 UNQ5782 HGNC:31966|Ensembl:ENSG00000256660|HPRD:18266|Vega:OTTHUMG00000168397 12 12p13.2 C-type lectin domain family 12, member B protein-coding CLEC12B C-type lectin domain family 12, member B O C-type lectin domain family 12 member B|macrophage antigen h 20121230 -9606 387841 RPL13AP20 hCG_27695 RPL13A_9_1211 HGNC:35709 12 12p13.1 ribosomal protein L13a pseudogene 20 pseudo RPL13AP20 ribosomal protein L13a pseudogene 20 O - 20121230 -9606 387845 EEF1A1P16 - - HGNC:37889 12 12p12.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 16 pseudo EEF1A1P16 eukaryotic translation elongation factor 1 alpha 1 pseudogene 16 O - 20121230 -9606 387849 REP15 - RAB15EP HGNC:33748|MIM:610848|Ensembl:ENSG00000174236|Vega:OTTHUMG00000169212 12 12p11.22 RAB15 effector protein protein-coding REP15 RAB15 effector protein O rab15 effector protein 20121230 -9606 387853 OR7A19P - - HGNC:15337 12 12q13.11 olfactory receptor, family 7, subfamily A, member 19 pseudogene pseudo OR7A19P olfactory receptor, family 7, subfamily A, member 19 pseudogene O - 20121230 -9606 387856 C12orf68 - - HGNC:33749|Ensembl:ENSG00000177875|HPRD:18375|Vega:OTTHUMG00000169902 12 12q13.11 chromosome 12 open reading frame 68 protein-coding C12orf68 chromosome 12 open reading frame 68 O uncharacterized protein C12orf68 20121230 -9606 387867 RPSAP12 - LAMR1P12|LAMRL2|LAMRP2|RPSA_18_1254 HGNC:6504 12 12q15 ribosomal protein SA pseudogene 12 pseudo RPSAP12 ribosomal protein SA pseudogene 12 O - 20121230 -9606 387869 LOC387869 - - - 12 12q21.1 microtubule-associated protein 1 light chain 3 beta pseudogene pseudo - - - - 20121230 -9606 387882 C12orf75 - AGD3|OCC-1|OCC1 HGNC:35164|Ensembl:ENSG00000235162|HPRD:17368|Vega:OTTHUMG00000150129 12 12q23.3 chromosome 12 open reading frame 75 protein-coding C12orf75 chromosome 12 open reading frame 75 O overexpressed in colon carcinoma 1 protein|overexpressed in colon carcinoma-1|putative overexpressed in colon carcinoma-1 protein variant C 20121230 -9606 387885 CCDC42B - - HGNC:37100|Ensembl:ENSG00000186710|Vega:OTTHUMG00000169655 12 12q24.13 coiled-coil domain containing 42B protein-coding CCDC42B coiled-coil domain containing 42B O coiled-coil domain-containing protein 42B 20121230 -9606 387890 TMEM233 - DSPB2|IFITMD2 HGNC:37219|Ensembl:ENSG00000224982|Vega:OTTHUMG00000168944 12 12q24.23 transmembrane protein 233 protein-coding TMEM233 transmembrane protein 233 O dispanin subfamily B member 2|interferon induced transmembrane protein domain containing 2|interferon-induced transmembrane domain-containing protein D2 20121230 -9606 387893 SETD8 - KMT5A|PR-Set7|SET07|SET8 HGNC:29489|MIM:607240|Ensembl:ENSG00000183955|HPRD:06254|Vega:OTTHUMG00000150477 12 12q24.31 SET domain containing (lysine methyltransferase) 8 protein-coding SETD8 SET domain containing (lysine methyltransferase) 8 O H4-K20-HMTase SETD8|H4-K20-specific histone methyltransferase|H4K20-specific histone methyltransferase splice variant Set8b|N-lysine methyltransferase SETD8|PR/SET domain containing protein 8|PR/SET domain-containing protein 07|PR/SET07|SET domain-containing protein 8|histone-lysine N-methyltransferase SETD8|lysine N-methyltransferase 5A 20121230 -9606 387895 LOC387895 - - - 12 12q24.32 uncharacterized LOC387895 miscRNA - - - - 20121230 -9606 387911 C1QTNF9B RP11-45B20.2 CTRP9B HGNC:34072|MIM:614148|Ensembl:ENSG00000205863|HPRD:17369 13 13q12.12 C1q and tumor necrosis factor related protein 9B protein-coding C1QTNF9B C1q and tumor necrosis factor related protein 9B O C1q/TNF-related protein 9B|collagen triple helix repeat-containing|complement C1q and tumor necrosis factor-related protein 9B|complement C1q tumor necrosis factor-related protein 9B 20121230 -9606 387914 SHISA2 UNQ9166/PRO28631 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa HGNC:20366|Ensembl:ENSG00000180730|HPRD:16589|Vega:OTTHUMG00000016612 13 13q12.13 shisa homolog 2 (Xenopus laevis) protein-coding SHISA2 shisa homolog 2 (Xenopus laevis) O protein shisa-2 homolog|transmembrane protein 46 20121230 -9606 387921 NHLRC3 RP11-50D16.3 - HGNC:33751|Ensembl:ENSG00000188811|HPRD:18377|Vega:OTTHUMG00000016765 13 13q13.3 NHL repeat containing 3 protein-coding NHLRC3 NHL repeat containing 3 O NHL repeat-containing protein 3 20121230 -9606 387923 SERP2 - C13orf21|RP11-269C23.1|bA269C23.1 HGNC:20607|Ensembl:ENSG00000151778|HPRD:16590|Vega:OTTHUMG00000016833 13 13q14.11 stress-associated endoplasmic reticulum protein family member 2 protein-coding SERP2 stress-associated endoplasmic reticulum protein family member 2 O ribosome-associated membrane protein RAMP4-2|stress-associated endoplasmic reticulum protein 2 20121230 -9606 387924 OGFOD1P1 RP11-203I16.3 - HGNC:39202 13 13q14.2 2-oxoglutarate and iron-dependent oxygenase domain containing 1 pseudogene 1 pseudo OGFOD1P1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 pseudogene 1 O - 20121230 -9606 387933 HNRNPA3P5 - - HGNC:39774 13 13q21.32 heterogeneous nuclear ribonucleoprotein A3 pseudogene 5 pseudo HNRNPA3P5 heterogeneous nuclear ribonucleoprotein A3 pseudogene 5 O - 20121230 -9606 387934 FABP5P1 RP11-505F3.4 FABP5|FABP5L1 HGNC:31059 13 13q22.1 fatty acid binding protein 5 pseudogene 1 pseudo FABP5P1 fatty acid binding protein 5 pseudogene 1 O - 20121230 -9606 387939 LOC387939 hCG_2045417 - - 13 13q31.1 hCG2045417 unknown - - - - 20120511 -9606 387977 NOVA1-AS1 - C14orf22 HGNC:19827 14 14q12 NOVA1 antisense RNA 1 (head to head) unknown NOVA1-AS1 NOVA1 antisense RNA 1 (head to head) O - 20121021 -9606 387978 C14orf23 - c14_5148 HGNC:19828 14 14q12 chromosome 14 open reading frame 23 miscRNA C14orf23 chromosome 14 open reading frame 23 O - 20121230 -9606 387990 TOMM20L UNQ9438/PRO34772 UNQ9438 HGNC:33752|Ensembl:ENSG00000196860|HPRD:18275|Vega:OTTHUMG00000140323 14 14q23.1 translocase of outer mitochondrial membrane 20 homolog (yeast)-like protein-coding TOMM20L translocase of outer mitochondrial membrane 20 homolog (yeast)-like O TOMM20-like protein 1|translocase of outer mitochondrial membrane 20 homolog type I 20121230 -9606 388007 SERPINA13P - SERPINA13|UNQ6121 HGNC:30909|HPRD:18039 14 14q32.13 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13, pseudogene pseudo SERPINA13P serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13, pseudogene O - 20121230 -9606 388011 C14orf64 - - HGNC:20111 14 14q32.2 chromosome 14 open reading frame 64 miscRNA C14orf64 chromosome 14 open reading frame 64 O - 20121230 -9606 388015 RTL1 - MART1|Mar1|PEG11 HGNC:14665|MIM:611896|Ensembl:ENSG00000254656|Vega:OTTHUMG00000167573 14 14q32.2 retrotransposon-like 1 protein-coding RTL1 retrotransposon-like 1 O mammalian retrotransposon derived protein 1|paternally expressed gene 11 protein|retrotransposon-derived protein PEG11|retrotransposon-like protein 1 20121230 -9606 388021 TMEM179 - C14orf90|TMEM179A HGNC:20137|Ensembl:ENSG00000189203|Ensembl:ENSG00000258986|HPRD:13464|Vega:OTTHUMG00000170827|Vega:OTTHUMG00000170829 14 14q32.33 transmembrane protein 179 protein-coding TMEM179 transmembrane protein 179 O transmembrane protein 179A 20121230 -9606 388022 LOC388022 - - HPRD:18378 14 14q32.33 uncharacterized LOC388022 unknown - - - - 20120710 -9606 388076 RPS8P10 - RPS8_6_1418 HGNC:35628 15 15q11.2 ribosomal protein S8 pseudogene 10 pseudo RPS8P10 ribosomal protein S8 pseudogene 10 O - 20121230 -9606 388077 IGHV1OR15-1 - IGHV1/OR15-1|IGHV1OR151 HGNC:5563|IMGT/GENE-DB:IGHV1/OR15-1 15 15q11.2 immunoglobulin heavy variable 1/OR15-1 (non-functional) pseudo IGHV1OR15-1 immunoglobulin heavy variable 1/OR15-1 (non-functional) O - 20121230 -9606 388104 LOC388104 - - - 15 15q13.2 transmembrane protein 183A pseudogene pseudo - - - - 20121230 -9606 388112 NANOGP8 - NANOG|NANOGP1|PN8 HGNC:23106 15 15q14 Nanog homeobox pseudogene 8 pseudo NANOGP8 Nanog homeobox pseudogene 8 O - 20121230 -9606 388115 C15orf52 - - HGNC:33488|Ensembl:ENSG00000188549|HPRD:16964|Vega:OTTHUMG00000129981 15 15q15.1 chromosome 15 open reading frame 52 protein-coding C15orf52 chromosome 15 open reading frame 52 O uncharacterized protein C15orf52 20121230 -9606 388121 TNFAIP8L3 - - HGNC:20620|Ensembl:ENSG00000183578|HPRD:13452|Vega:OTTHUMG00000172460 15 15q21.2 tumor necrosis factor, alpha-induced protein 8-like 3 protein-coding TNFAIP8L3 tumor necrosis factor, alpha-induced protein 8-like 3 O TNF alpha-induced protein 8-like protein 3|TNFAIP8-like protein 3|tumor necrosis factor alpha-induced protein 8-like protein 3|tumor necrosis factor, alpha-induced protein 8-like protein 3 20121230 -9606 388122 RPSAP55 - RPSA_28_1433 HGNC:36921 15 15q21.3 ribosomal protein SA pseudogene 55 pseudo RPSAP55 ribosomal protein SA pseudogene 55 O - 20121230 -9606 388125 C2CD4B - FAM148B|NLF2 HGNC:33628|MIM:610344|Ensembl:ENSG00000205502|HPRD:17636|Vega:OTTHUMG00000171959 15 15q22.2 C2 calcium-dependent domain containing 4B protein-coding C2CD4B C2 calcium-dependent domain containing 4B O C2 calcium-dependent domain-containing protein 4B|family with sequence similarity 148, member B|nuclear localized factor 2|nuclear-localized factor 2 20121230 -9606 388132 RPL17P5 - RPL17_2_69 HGNC:35491|HPRD:16806 1 1p22.3 ribosomal protein L17 pseudogene 5 pseudo RPL17P5 ribosomal protein L17 pseudogene 5 O - 20121230 -9606 388135 C15orf59 - - HGNC:33753|Ensembl:ENSG00000205363 15 15q24.1 chromosome 15 open reading frame 59 protein-coding C15orf59 chromosome 15 open reading frame 59 O UPF0583 protein C15orf59 20121230 -9606 388147 RPL9P9 - RPL9_14_1458 HGNC:17251 15 15q25.2 ribosomal protein L9 pseudogene 9 pseudo RPL9P9 ribosomal protein L9 pseudogene 9 O - 20121209 -9606 388152 LOC388152 - - HPRD:14199 15 15q25.2 uncharacterized LOC388152 pseudo - - - - 20121230 -9606 388165 UBE2Q2P1 - UBE2QP1 HGNC:37439|HPRD:13471 15 15q25.2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1 pseudo UBE2Q2P1 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1 O - 20121230 -9606 388181 FAM149B1P1 - FAM149B2|KIAA0974P HGNC:31735 15 15q26.2 family with sequence similarity 149, member B2 pseudo FAM149B1P1 family with sequence similarity 149, member B1 pseudogene 1 O - 20121230 -9606 388182 FLJ42289 HSD47 - HPRD:16960 15 15q26.3 uncharacterized LOC388182 miscRNA - - - - 20121230 -9606 388199 PRR25 - gs64 HGNC:37230|Ensembl:ENSG00000167945|HPRD:18379|Vega:OTTHUMG00000178117 16 16p13.3 proline rich 25 protein-coding PRR25 proline rich 25 O proline-rich protein 25 20121230 -9606 388210 LOC388210 - - - 16 16p13.13 uncharacterized LOC388210 protein-coding - - - - 20121209 -9606 388221 LOC388221 - - - 16 16p11.2 NPIP-like locus unknown - - - - 20120508 -9606 388228 SBK1 - SBK HGNC:17699|Ensembl:ENSG00000188322|HPRD:18608|Vega:OTTHUMG00000166066 16 16p11.2 SH3-binding domain kinase 1 protein-coding SBK1 SH3-binding domain kinase 1 O serine/threonine-protein kinase SBK1 20121230 -9606 388242 LOC388242 - - - 16 16p11.2 coiled-coil domain containing 101 pseudogene pseudo - - - - 20121230 -9606 388248 LOC388248 - - - 16 16p11.2 Rho GTPase activating protein 23 pseudogene pseudo - - - - 20121230 -9606 388254 HERC2P5 - D16F37S6 HGNC:4873 16 16p11.2 hect domain and RLD 2 pseudogene 5 pseudo HERC2P5 hect domain and RLD 2 pseudogene 5 O - 20121209 -9606 388255 IGHV3OR16-8 - IGHV3/OR16-8|IGHV3OR168 HGNC:5643|IMGT/GENE-DB:IGHV3/OR16-8 16 16p11.2 immunoglobulin heavy variable 3/OR16-8 (non-functional) other IGHV3OR16-8 immunoglobulin heavy variable 3/OR16-8 (non-functional) O - 20121230 -9606 388272 C16orf87 - - HGNC:33754|Ensembl:ENSG00000155330|HPRD:17370|Vega:OTTHUMG00000132538 16 16q11.2 chromosome 16 open reading frame 87 protein-coding C16orf87 chromosome 16 open reading frame 87 O UPF0547 protein C16orf87 20121230 -9606 388275 HNRNPA1P7 - HNRPA1L3 HGNC:31015 18 18q12.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 7 pseudo HNRNPA1P7 heterogeneous nuclear ribonucleoprotein A1 pseudogene 7 O - 20121230 -9606 388276 C16orf97 hCG_2045437 - HGNC:44658|Ensembl:ENSG00000261190|Vega:OTTHUMG00000173232 16 16q12.1 chromosome 16 open reading frame 97 protein-coding C16orf97 chromosome 16 open reading frame 97 O hCG2045437|uncharacterized protein LOC388276 20121230 -9606 388282 LOC388282 - - - 16 16q13 uncharacterized LOC388282 miscRNA - - - - 20121230 -9606 388284 C16orf86 - - HGNC:33755|Ensembl:ENSG00000159761|HPRD:18380|Vega:OTTHUMG00000150527 16 16q22.1 chromosome 16 open reading frame 86 protein-coding C16orf86 chromosome 16 open reading frame 86 O uncharacterized protein C16orf86 20121230 -9606 388289 C16orf47 - - HGNC:28329|HPRD:16623 16 16q22.3 chromosome 16 open reading frame 47 unknown C16orf47 chromosome 16 open reading frame 47 O - 20121230 -9606 388323 GLTPD2 - - HGNC:33756|Ensembl:ENSG00000182327|HPRD:18609|Vega:OTTHUMG00000177929 17 17p13.2 glycolipid transfer protein domain containing 2 protein-coding GLTPD2 glycolipid transfer protein domain containing 2 O glycolipid transfer protein domain-containing protein 2 20121230 -9606 388324 INCA1 HSD45 - HGNC:32224|Ensembl:ENSG00000196388|HPRD:17150|Vega:OTTHUMG00000177768 17 17p13.2 inhibitor of CDK, cyclin A1 interacting protein 1 protein-coding INCA1 inhibitor of CDK, cyclin A1 interacting protein 1 O protein INCA1 20121230 -9606 388325 SCIMP UNQ5783/PRO16090 C17orf87|UNQ5783 HGNC:33504|MIM:614406|Ensembl:ENSG00000161929|HPRD:18267|Vega:OTTHUMG00000132914 17 17p13.2 SLP adaptor and CSK interacting membrane protein protein-coding SCIMP SLP adaptor and CSK interacting membrane protein O DTFT5783|SLP adapter and CSK-interacting membrane protein|SLP65/SLP76, Csk-interacting membrane protein|transmembrane protein C17orf87 20121230 -9606 388327 C17orf100 hCG_1985469 - HGNC:34494|Ensembl:ENSG00000212734|Vega:OTTHUMG00000132435 17 17p13.1 chromosome 17 open reading frame 100 protein-coding C17orf100 chromosome 17 open reading frame 100 O hCG1985469|uncharacterized protein C17orf100 20121230 -9606 388333 SPDYE4 - - HGNC:35463|Ensembl:ENSG00000183318|Vega:OTTHUMG00000178566 17 17p13.1 speedy homolog E4 (Xenopus laevis) protein-coding SPDYE4 speedy homolog E4 (Xenopus laevis) O putative Speedy protein E4|speedy protein E4 20121230 -9606 388335 TMEM220 - - HGNC:33757|Ensembl:ENSG00000187824|HPRD:17371|Vega:OTTHUMG00000178043 17 17p13.1 transmembrane protein 220 protein-coding TMEM220 transmembrane protein 220 O - 20121230 -9606 388336 SHISA6 - - HGNC:34491|Ensembl:ENSG00000188803|HPRD:13507|Vega:OTTHUMG00000154121 17 17p12 shisa homolog 6 (Xenopus laevis) protein-coding SHISA6 shisa homolog 6 (Xenopus laevis) O protein shisa-6 homolog 20121230 -9606 388339 RPS18P12 - RPS18_4_1516 HGNC:35967 17 17p12 ribosomal protein S18 pseudogene 12 pseudo RPS18P12 ribosomal protein S18 pseudogene 12 O - 20121230 -9606 388341 FAM211A - C17orf76 HGNC:32403|Ensembl:ENSG00000181350|HPRD:16939|Vega:OTTHUMG00000058988 17 17p11.2 family with sequence similarity 211, member A protein-coding FAM211A family with sequence similarity 211, member A O leucine-rich repeat-containing protein C17orf76|leucine-rich repeat-containing protein FAM211A 20121230 -9606 388344 RPL13P12 - RPL13_4_1521 HGNC:35701 17 17p11.2 ribosomal protein L13 pseudogene 12 pseudo RPL13P12 ribosomal protein L13 pseudogene 12 O - 20121230 -9606 388363 RPS7P1 - RPS7_4_1531 HGNC:17081 17 17q11.2 ribosomal protein S7 pseudogene 1 pseudo RPS7P1 ribosomal protein S7 pseudogene 1 O - 20121230 -9606 388364 TMIGD1 UNQ9372/PRO34164 TMIGD|UNQ9372 HGNC:32431|Ensembl:ENSG00000182271|HPRD:18274|Vega:OTTHUMG00000179757 17 17q11.2 transmembrane and immunoglobulin domain containing 1 protein-coding TMIGD1 transmembrane and immunoglobulin domain containing 1 O AWKS9372|transmembrane and immunoglobulin domain-containing protein 1 20121230 -9606 388372 CCL4L2 - AT744.2|CCL4L|SCYA4L HGNC:24066|MIM:610757|Ensembl:ENSG00000197262|HPRD:16689|Vega:OTTHUMG00000133066 17 17q12 chemokine (C-C motif) ligand 4-like 2 protein-coding CCL4L2 chemokine (C-C motif) ligand 4-like 2 O CC chemokine ligand 4L1d2|CC chemokine ligand 4L2|chemokine (C-C motif) ligand 4-like 1, telomeric|lymphocyte activation gene 1|macrophage inflammatory protein-1b2 20121230 -9606 388381 C17orf98 - - HGNC:34492|Ensembl:ENSG00000214556|Vega:OTTHUMG00000132347 17 17q12 chromosome 17 open reading frame 98 protein-coding C17orf98 chromosome 17 open reading frame 98 O uncharacterized protein C17orf98 20121230 -9606 388387 LINC00671 - - HGNC:44339|HPRD:13404 17 17q21.31 long intergenic non-protein coding RNA 671 miscRNA LINC00671 long intergenic non-protein coding RNA 671 O - 20121230 -9606 388389 CCDC103 - CILD17|PR46b|SMH HGNC:32700|MIM:614677|Ensembl:ENSG00000167131|HPRD:14200|Vega:OTTHUMG00000154264 17 17q21.31 coiled-coil domain containing 103 protein-coding CCDC103 coiled-coil domain containing 103 O coiled-coil domain-containing protein 103 20121230 -9606 388394 RPRML - - HGNC:32422|Ensembl:ENSG00000179673|HPRD:14201|Vega:OTTHUMG00000178187 17 17q21.32 reprimo-like protein-coding RPRML reprimo-like O reprimo-like protein 20121230 -9606 388401 RPL7P48 - RPL7_19_1558 HGNC:35540 17 17q21.33 ribosomal protein L7 pseudogene 48 pseudo RPL7P48 ribosomal protein L7 pseudogene 48 O - 20121230 -9606 388403 YPEL2 FKSG4 - HGNC:18326|MIM:609723|Ensembl:ENSG00000175155|HPRD:15682|Vega:OTTHUMG00000179378 17 17q22 yippee-like 2 (Drosophila) protein-coding YPEL2 yippee-like 2 (Drosophila) O DiGeorge syndrome-related protein|protein yippee-like 2 20121230 -9606 388406 FLJ27502 - - - 17 17q23.2 uncharacterized LOC388406 miscRNA - - - - 20120508 -9606 388407 C17orf82 - - HGNC:32699|Ensembl:ENSG00000187013|HPRD:14202|Vega:OTTHUMG00000180077 17 17q23.2 chromosome 17 open reading frame 82 protein-coding C17orf82 chromosome 17 open reading frame 82 O putative uncharacterized protein C17orf82 20121230 -9606 388414 LOC388414 - - - 17 17q24.3 uncharacterized LOC388414 miscRNA - - - - 20111025 -9606 388419 BTBD17 - BTBD17A|LGALS3BPL|TANGO10A HGNC:33758|Ensembl:ENSG00000204347|Vega:OTTHUMG00000178580 17 17q25.1 BTB (POZ) domain containing 17 protein-coding BTBD17 BTB (POZ) domain containing 17 O BTB/POZ and BACK domain-containing protein LOC388419|BTB/POZ domain-containing protein 17|transport and golgi organization 10 homolog A 20121230 -9606 388428 AATK-AS1 - - HGNC:40053|HPRD:16976 17 17q25.3 AATK antisense RNA 1 miscRNA AATK-AS1 AATK antisense RNA 1 O - 20121230 -9606 388436 LOC388436 - - - 17 17p11.2 uncharacterized LOC388436 unknown - - - - 20121209 -9606 388439 FLJ12120 - - - 17 17p13.3 uncharacterized LOC388439 protein-coding - - - - 20120508 -9606 388456 LOC388456 - - - 18 18p11.32 uncharacterized LOC388456 miscRNA - - - - 20120508 -9606 388460 RPL6P22 - RPL6_7_890 HGNC:36220 8 8p12 ribosomal protein L6 pseudogene 22 pseudo RPL6P22 ribosomal protein L6 pseudogene 22 O - 20121230 -9606 388468 POTEC - A26B2|CT104.6|POTE-18|POTE18 HGNC:33894|Ensembl:ENSG00000183206|Vega:OTTHUMG00000162963 18 18p11.21 POTE ankyrin domain family, member C protein-coding POTEC POTE ankyrin domain family, member C O ANKRD26-like family B member 2|ANKRD26-like family B, member 2|POTE ankyrin domain family member C|cancer/testis antigen family 104, member 6|prostate, ovary, testis-expressed protein on chromosome 18 20121230 -9606 388474 RPL7AP66 - RPL7A_30_1597 HGNC:35682 18 18q12.2 ribosomal protein L7a pseudogene 66 pseudo RPL7AP66 ribosomal protein L7a pseudogene 66 O - 20121230 -9606 388478 SDCCAG3P1 - SDCCAG3L HGNC:29375 18 18q21.32 serologically defined colon cancer antigen 3 pseudogene 1 pseudo SDCCAG3P1 serologically defined colon cancer antigen 3 pseudogene 1 O - 20121230 -9606 388499 LOC388499 hCG_2003956 - - 19 19p13.2 lysophospholipase II pseudogene pseudo - - - - 20121230 -9606 388503 C3P1 - CPLP HGNC:34414|HPRD:18382 19 19p13.2 complement component 3 precursor pseudogene pseudo C3P1 complement component 3 precursor pseudogene O - 20121230 -9606 388507 ZNF788 - - HGNC:33112|HPRD:17002 19 19p13.2 zinc finger family member 788 pseudo ZNF788 zinc finger family member 788 O - 20121230 -9606 388512 CLEC17A - - HGNC:34520|Ensembl:ENSG00000187912|HPRD:16993|Vega:OTTHUMG00000169312 19 19p13.12 C-type lectin domain family 17, member A protein-coding CLEC17A C-type lectin domain family 17, member A O prolectin 20121230 -9606 388514 CYP4F24P - - HGNC:39945 19 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 24, pseudogene pseudo CYP4F24P cytochrome P450, family 4, subfamily F, polypeptide 24, pseudogene O - 20121230 -9606 388523 ZNF728 - - HGNC:32463 19 19p12 zinc finger protein 728 protein-coding ZNF728 zinc finger protein 728 O zinc finger protein 43 20121230 -9606 388524 RPSAP58 - RPSA_30_1642 HGNC:36809|HPRD:14203 19 19p12 ribosomal protein SA pseudogene 58 pseudo RPSAP58 ribosomal protein SA pseudogene 58 O - 20121230 -9606 388531 RGS9BP - PERRS|R9AP|RGS9 HGNC:30304|MIM:607814|Ensembl:ENSG00000186326|HPRD:16991|Vega:OTTHUMG00000180227 19 19q13.11 regulator of G protein signaling 9 binding protein protein-coding RGS9BP regulator of G protein signaling 9 binding protein O RGS9 anchor protein|RGS9-anchoring protein|regulator of G-protein signaling 9-binding protein 20121230 -9606 388532 RPL21P131 - RPL21_64_1647 HGNC:36428 19 19q13.11 ribosomal protein L21 pseudogene 131 pseudo RPL21P131 ribosomal protein L21 pseudogene 131 O - 20121230 -9606 388533 KRTDAP UNQ467/PRO826 KDAP|UNQ467 HGNC:16313|Ensembl:ENSG00000188508|HPRD:18262|Vega:OTTHUMG00000155449 19 19q13.12 keratinocyte differentiation-associated protein protein-coding KRTDAP keratinocyte differentiation-associated protein O KIPV467 20121230 -9606 388536 ZNF790 - - HGNC:33114|Ensembl:ENSG00000197863|HPRD:17566|Vega:OTTHUMG00000165616 19 19q13.12 zinc finger protein 790 protein-coding ZNF790 zinc finger protein 790 O - 20121230 -9606 388550 CEACAM22P - - HGNC:38029 19 19q13.31 carcinoembryonic antigen-related cell adhesion molecule 2, pseudogene pseudo CEACAM22P carcinoembryonic antigen-related cell adhesion molecule 2, pseudogene O - 20121230 -9606 388551 CEACAM16 - CEAL2|DFNA4B HGNC:31948|MIM:614591|Ensembl:ENSG00000213892|Vega:OTTHUMG00000151519 19 19q13.32 carcinoembryonic antigen-related cell adhesion molecule 16 protein-coding CEACAM16 carcinoembryonic antigen-related cell adhesion molecule 16 O carcinoembryonic antigen like-2 protein 20121230 -9606 388552 BLOC1S3 - BLOS3|HPS8|RP HGNC:20914|MIM:609762|Ensembl:ENSG00000189114|HPRD:12527|Vega:OTTHUMG00000181776 19 19q13.32 biogenesis of lysosomal organelles complex-1, subunit 3 protein-coding BLOC1S3 biogenesis of lysosomal organelles complex-1, subunit 3 O BLOC-1 subunit 3|biogenesis of lysosome-related organelles complex 1 subunit 3|biogenesis of lysosome-related organelles complex-1, subunit 3|reduced pigmentation, mouse, homolog of 20121230 -9606 388553 LOC388553 - - - 19 19q13.32 uncharacterized LOC388553 miscRNA - - - - 20121230 -9606 388555 IGFL3 UNQ483/PRO982 UNQ483 HGNC:32930|MIM:610546|Ensembl:ENSG00000188624|HPRD:17140|Vega:OTTHUMG00000172904 19 19q13.32 IGF-like family member 3 protein-coding IGFL3 IGF-like family member 3 O RPRC483|insulin growth factor-like family member 3 20121230 -9606 388556 RPS9P4 - RPS9_1_1662 HGNC:36710 19 19q13.33 ribosomal protein S9 pseudogene 4 pseudo RPS9P4 ribosomal protein S9 pseudogene 4 O - 20121230 -9606 388558 ZNF808 - - HGNC:33230|Ensembl:ENSG00000198482|Vega:OTTHUMG00000158230 19 19q13.41 zinc finger protein 808 protein-coding ZNF808 zinc finger protein 808 O - 20121230 -9606 388559 ZNF888 - - HGNC:38695 19 19q13.41 zinc finger protein 888 protein-coding ZNF888 zinc finger protein 888 O - 20121230 -9606 388560 ERVFRD-2 - - HGNC:35201|HPRD:16994 19 19q13.41 endogenous retrovirus group FRD, member 2 unknown ERVFRD-2 endogenous retrovirus group FRD, member 2 O - 20120710 -9606 388561 ZNF761 - ZNF468 HGNC:23179|HPRD:16912 19 19q13.42 zinc finger protein 761 protein-coding ZNF761 zinc finger protein 761 O zinc finger protein 468 20121230 -9606 388564 TMEM238 - - HGNC:40042|Ensembl:ENSG00000233493|Vega:OTTHUMG00000180795 19 19q13.42 transmembrane protein 238 protein-coding TMEM238 transmembrane protein 238 O - 20121230 -9606 388566 ZNF470 - CZF-1 HGNC:22220|Ensembl:ENSG00000197016|HPRD:13398 19 19q13.43 zinc finger protein 470 protein-coding ZNF470 zinc finger protein 470 O chondrogenesis zinc finger protein 1 20121230 -9606 388567 ZNF749 - - HGNC:32783|Ensembl:ENSG00000186230|HPRD:18610|Vega:OTTHUMG00000150372 19 19q13.43 zinc finger protein 749 protein-coding ZNF749 zinc finger protein 749 O - 20121230 -9606 388569 ZNF324B - - HGNC:33107|Ensembl:ENSG00000249471|HPRD:13515 19 19q13.43 zinc finger protein 324B protein-coding ZNF324B zinc finger protein 324B O - 20121230 -9606 388572 LOC388572 - - - 11 11p15.5 uncharacterized LOC388572 unknown - - - - 20120511 -9606 388574 FLJ43681 - - - 17 17q25.3 ribosomal protein L23a pseudogene pseudo - - - - 20121230 -9606 388579 LOC388579 - - - 1 1p36.33 TUBB4Q pseudogene pseudo - - - - 20121230 -9606 388581 FAM132A RP5-902P8.4 C1QDC2|C1QTNF12|CTRP12 HGNC:32308|Ensembl:ENSG00000184163|Vega:OTTHUMG00000001412 1 1p36.33 family with sequence similarity 132, member A protein-coding FAM132A family with sequence similarity 132, member A O C1q domain containing 2|C1q/TNF-related protein 12|adipolin|adipose-derived insulin-sensitizing factor|protein FAM132A 20121230 -9606 388585 HES5 RP3-395M20.5 bHLHb38 HGNC:19764|MIM:607348|Ensembl:ENSG00000197921|HPRD:16240|Vega:OTTHUMG00000000793 1 1p36.32 hairy and enhancer of split 5 (Drosophila) protein-coding HES5 hairy and enhancer of split 5 (Drosophila) O class B basic helix-loop-helix protein 38|transcription factor HES-5 20121230 -9606 388588 SMIM1 - - HGNC:44204|Ensembl:ENSG00000235169|Vega:OTTHUMG00000003505 1 1p36.32 small integral membrane protein 1 protein-coding SMIM1 small integral membrane protein 1 O - 20121230 -9606 388591 RNF207 - C1orf188 HGNC:32947|Ensembl:ENSG00000158286|HPRD:08119|HPRD:13536|Vega:OTTHUMG00000001089 1 1p36.31 ring finger protein 207 protein-coding RNF207 ring finger protein 207 O RING finger protein 207 20121230 -9606 388595 TMEM82 RP11-169K16.3 - HGNC:32350|Ensembl:ENSG00000162460|HPRD:18383|Vega:OTTHUMG00000003065 1 1p36.21 transmembrane protein 82 protein-coding TMEM82 transmembrane protein 82 O - 20121230 -9606 388605 HS6ST1P1 - HS6ST1P HGNC:31835 1 1p36.12 heparan sulfate 6-O-sulfotransferase 1 pseudogene 1 pseudo HS6ST1P1 heparan sulfate 6-O-sulfotransferase 1 pseudogene 1 O - 20121230 -9606 388606 SDHDP7 - - HGNC:31410 1 1p36.11 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 7 pseudo SDHDP7 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 7 O - 20121230 -9606 388610 TRNP1 - C1orf225|TNRP HGNC:34348|Ensembl:ENSG00000253368|HPRD:18384|Vega:OTTHUMG00000004277 1 1p36.11 TMF1-regulated nuclear protein 1 protein-coding TRNP1 TMF1-regulated nuclear protein 1 O TMF regulated nuclear protein|TMF-regulated nuclear protein 1 20121230 -9606 388611 CD164L2 RP1-144C9.1 UNQ6122 HGNC:32043|Ensembl:ENSG00000174950|HPRD:15619|Vega:OTTHUMG00000003395 1 1p36.11 CD164 sialomucin-like 2 protein-coding CD164L2 CD164 sialomucin-like 2 O CD164 sialomucin-like 2 protein|EAPG6122 20121230 -9606 388621 RPL21P20 - RPL21_3_36 HGNC:36582 1 1p34.2 ribosomal protein L21 pseudogene 20 pseudo RPL21P20 ribosomal protein L21 pseudogene 20 O - 20121230 -9606 388630 TRABD2B - TIKI2 HGNC:44200|MIM:614913|Ensembl:ENSG00000204018|Vega:OTTHUMG00000007960 1 1p33 TraB domain containing 2B protein-coding TRABD2B TraB domain containing 2B O TRAB domain-containing protein 2B|UPF0632 protein A|metalloprotease TIKI2 20121230 -9606 388633 LDLRAD1 - - HGNC:32069|Ensembl:ENSG00000203985|HPRD:17372|Vega:OTTHUMG00000008433 1 1p32.3 low density lipoprotein receptor class A domain containing 1 protein-coding LDLRAD1 low density lipoprotein receptor class A domain containing 1 O low density lipoprotein receptor A domain containing 1|low-density lipoprotein receptor class A domain-containing protein 1 20121230 -9606 388646 GBP7 - GBP4L HGNC:29606|MIM:612468|Ensembl:ENSG00000213512|HPRD:13432|Vega:OTTHUMG00000010659 1 1p22.2 guanylate binding protein 7 protein-coding GBP7 guanylate binding protein 7 O GBP-7|GTP-binding protein 7|guanine nucleotide-binding protein 7|guanylate-binding protein 7 20121230 -9606 388649 C1orf146 RP11-163M2.3 RP11-163M2.4 HGNC:24032|Ensembl:ENSG00000203910|HPRD:17988|Vega:OTTHUMG00000010285 1 1p22.1 chromosome 1 open reading frame 146 protein-coding C1orf146 chromosome 1 open reading frame 146 O uncharacterized protein C1orf146 20121230 -9606 388650 FAM69A - - HGNC:32213|MIM:614542|Ensembl:ENSG00000154511|HPRD:14204|Vega:OTTHUMG00000010894 1 1p22.1 family with sequence similarity 69, member A protein-coding FAM69A family with sequence similarity 69, member A O protein FAM69A 20121230 -9606 388662 SLC6A17 - NTT4 HGNC:31399|MIM:610299|Ensembl:ENSG00000197106|HPRD:18061|Vega:OTTHUMG00000011761 1 1p13.3 solute carrier family 6, member 17 protein-coding SLC6A17 solute carrier family 6, member 17 O orphan sodium- and chloride-dependent neurotransmitter transporter NTT4|sodium-dependent neurotransmitter transporter NTT4|sodium-dependent neutral amino acid transporter SLC6A17|solute carrier family 6 (neurotransmitter transporter), member 17 20121230 -9606 388666 FLJ36116 - - - 1 1p13.2 uncharacterized LOC388666 unknown - - - - 20120511 -9606 388667 C1orf137 RP4-686J16.1 - HGNC:32040|HPRD:18385 1 1p13.1 chromosome 1 open reading frame 137 unknown C1orf137 chromosome 1 open reading frame 137 O - 20121021 -9606 388677 NOTCH2NL - N2N HGNC:31862|Ensembl:ENSG00000213240|HPRD:14833|Vega:OTTHUMG00000013754 1 1q21.2 notch 2 N-terminal like protein-coding NOTCH2NL notch 2 N-terminal like O Notch homolog 2 N-terminal like protein|notch homolog 2 N-terminal-like protein 20121230 -9606 388685 FLJ39739 - - HPRD:13438 1 1q21.1 uncharacterized FLJ39739 miscRNA - - - - 20121230 -9606 388692 LOC388692 - - HPRD:18386 1 1q21.2 uncharacterized LOC388692 miscRNA - - - - 20121230 -9606 388695 LYSMD1 SB145 RP11-68I18.5 HGNC:32070|Ensembl:ENSG00000163155|HPRD:18017|Vega:OTTHUMG00000012260 1 1q21.3 LysM, putative peptidoglycan-binding, domain containing 1 protein-coding LYSMD1 LysM, putative peptidoglycan-binding, domain containing 1 O lysM and putative peptidoglycan-binding domain-containing protein 1 20121230 -9606 388697 HRNR - FLG3|S100A16|S100a18 HGNC:20846|Ensembl:ENSG00000197915|HPRD:17114|Vega:OTTHUMG00000012243 1 1q21.3 hornerin protein-coding HRNR hornerin O filaggrin family member 3|intermediate filament-associated protein 20121230 -9606 388698 FLG2 RP1-14N1.3 IFPS HGNC:33276|Ensembl:ENSG00000143520|HPRD:11815|Vega:OTTHUMG00000012245 1 1q21.3 filaggrin family member 2 protein-coding FLG2 filaggrin family member 2 O FLG-2|filaggrin 2|filaggrin-2|ifapsoriasin|intermediate filament-associated and psoriasis susceptibility protein|intermediate filament-associated and psoriasis-susceptibility protein 20121230 -9606 388699 LINC00302 - C1orf46|NCRNA00302|xp33 HGNC:31825 1 1q21.3 long intergenic non-protein coding RNA 302 unknown LINC00302 long intergenic non-protein coding RNA 302 O - 20121021 -9606 388701 C1orf189 - - HGNC:32305|Ensembl:ENSG00000163263|HPRD:17373|Vega:OTTHUMG00000035982 1 1q21.3 chromosome 1 open reading frame 189 protein-coding C1orf189 chromosome 1 open reading frame 189 O uncharacterized protein C1orf189 20121230 -9606 388707 RPSAP18 - RPSA_4_107 HGNC:36106 1 1q23.2 ribosomal protein SA pseudogene 18 pseudo RPSAP18 ribosomal protein SA pseudogene 18 O - 20121230 -9606 388714 FMO6P RP1-127D3.2 FMO6 HGNC:24024|HPRD:18387 1 1q24.3 flavin containing monooxygenase 6 pseudogene pseudo FMO6P flavin containing monooxygenase 6 pseudogene O - 20121230 -9606 388719 LINC00272 - C1orf120|NCRNA00272|RP1-223H12.3 HGNC:26898|HPRD:17987 1 1q25.3 long intergenic non-protein coding RNA 272 miscRNA LINC00272 long intergenic non-protein coding RNA 272 O - 20121230 -9606 388722 C1orf53 RP11-255O17.1 - HGNC:30003|Ensembl:ENSG00000203724|HPRD:18611|Vega:OTTHUMG00000035659 1 1q31.3 chromosome 1 open reading frame 53 protein-coding C1orf53 chromosome 1 open reading frame 53 O uncharacterized protein C1orf53 20121230 -9606 388730 TMEM81 UNQ2788/PRO7178 HC3107|KVLA2788|UNQ2788 HGNC:32349|Ensembl:ENSG00000174529|HPRD:14205|Vega:OTTHUMG00000037103 1 1q32.1 transmembrane protein 81 protein-coding TMEM81 transmembrane protein 81 O - 20121230 -9606 388734 LOC388734 - - - 1 1q32.2 PRELI domain containing 1 pseudogene pseudo - - - - 20121230 -9606 388743 CAPN8 RP11-105I12.2 nCL-2 HGNC:1485 1 1q41 calpain 8 protein-coding CAPN8 calpain 8 O calpain-8|new calpain 2|stomach-specific M-type calpain 20121230 -9606 388753 COA6 RP5-827C21.3 C1orf31 HGNC:18025|MIM:614772|Ensembl:ENSG00000168275|HPRD:18535|Vega:OTTHUMG00000037945 1 1q42.2 cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) protein-coding COA6 cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) O uncharacterized protein C1orf31 20121230 -9606 388759 C1orf229 - - HGNC:33759|Ensembl:ENSG00000221953|HPRD:13511|Vega:OTTHUMG00000165196 1 1q44 chromosome 1 open reading frame 229 protein-coding C1orf229 chromosome 1 open reading frame 229 O putative uncharacterized protein C1orf229 20121230 -9606 388761 OR14A2 - OR5AX1|OR5AX1P HGNC:15024 1 1q44 olfactory receptor, family 14, subfamily A, member 2 pseudo OR14A2 olfactory receptor, family 14, subfamily A, member 2 O - 20121230 -9606 388762 OR2M1P - JCG10|OR2M1|OST037 HGNC:8267 1 1q44 olfactory receptor, family 2, subfamily M, member 1 pseudogene pseudo OR2M1P olfactory receptor, family 2, subfamily M, member 1 pseudogene O - 20121230 -9606 388780 LOC388780 - - - 20 20p13 uncharacterized LOC388780 miscRNA - - - - 20121209 -9606 388789 LINC00493 - - HGNC:43430 20 20p11.23 long intergenic non-protein coding RNA 493 miscRNA LINC00493 long intergenic non-protein coding RNA 493 O - 20121230 -9606 388795 EFCAB8 RP11-60H7.2 - HGNC:34532 20 20q11.21 EF-hand calcium binding domain 8 protein-coding EFCAB8 EF-hand calcium binding domain 8 O EF-hand calcium-binding domain-containing protein 8|EF-hand domain-containing protein ENSP00000383366 20121230 -9606 388796 LOC388796 - - - 20 20q11.23 uncharacterized LOC388796 miscRNA - - - - 20121230 -9606 388799 FAM209B RP5-1153D9.3 C20orf107|dJ1153D9.4 HGNC:16101|Ensembl:ENSG00000213714|HPRD:18388|Vega:OTTHUMG00000032800 20 20q13.31 family with sequence similarity 209, member B protein-coding FAM209B family with sequence similarity 209, member B O protein FAM209B|uncharacterized protein C20orf107 20121230 -9606 388813 LOC388813 - - Ensembl:ENSG00000243440|Vega:OTTHUMG00000074315 21 21q11.2 uncharacterized protein ENSP00000383407-like protein-coding - - - putative uncharacterized protein ENSP00000383407 20121230 -9606 388815 LINC00478 - C21orf34|C21orf35|FLJ38295 HGNC:1274|HPRD:10746 21 21q21.1 long intergenic non-protein coding RNA 478 miscRNA LINC00478 long intergenic non-protein coding RNA 478 O - 20121230 -9606 388818 KRTAP26-1 - - HGNC:33760|Ensembl:ENSG00000197683|HPRD:14206|Vega:OTTHUMG00000057766 21 21q22.11 keratin associated protein 26-1 protein-coding KRTAP26-1 keratin associated protein 26-1 O keratin-associated protein 26-1 20121230 -9606 388820 LOC388820 - - - 21 21q22.11 uncharacterized LOC388820 unknown - - - - 20121230 -9606 388830 LINC00316 - C21orf111|NCRNA00316|PRED59 HGNC:19723 21 21q22.3 long intergenic non-protein coding RNA 316 miscRNA LINC00316 long intergenic non-protein coding RNA 316 O - 20121230 -9606 388849 LOC388849 - - Ensembl:ENSG00000234409|Vega:OTTHUMG00000150751 22 22q11.21 uncharacterized LOC388849 protein-coding - - - uncharacterized protein LOC388849 20121230 -9606 388882 LOC388882 - - HPRD:14207 22 22q11.23 uncharacterized LOC388882 unknown - - - - 20121230 -9606 388885 RPS10P29 - - HGNC:37120 22 22q11.23 ribosomal protein S10 pseudogene 29 pseudo RPS10P29 ribosomal protein S10 pseudogene 29 O - 20121230 -9606 388886 FAM211B - C22orf36 HGNC:33155|Ensembl:ENSG00000178026|HPRD:14208|Vega:OTTHUMG00000150729 22 22q11.23 family with sequence similarity 211, member B protein-coding FAM211B family with sequence similarity 211, member B O leucine-rich repeat-containing protein C22orf36|leucine-rich repeat-containing protein FAM211B 20121230 -9606 388906 LOC388906 - - - 22 22q13.2 opioid growth factor receptor pseudogene pseudo - - - - 20121230 -9606 388907 RPL5P34 - RPL5_15_1754 HGNC:36463 22 22q13.2 ribosomal protein L5 pseudogene 34 pseudo RPL5P34 ribosomal protein L5 pseudogene 34 O - 20121230 -9606 388910 LINC00207 RP3-474I12.5 NCRNA00207 HGNC:37255|HPRD:18389 22 22q13.31 long intergenic non-protein coding RNA 207 miscRNA LINC00207 long intergenic non-protein coding RNA 207 O - 20121230 -9606 388925 PSMC1P10 - - HGNC:39785 2 2p24.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 10 pseudo PSMC1P10 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 10 O - 20121230 -9606 388931 MFSD2B - - HGNC:37207|Ensembl:ENSG00000205639|Vega:OTTHUMG00000090819 2 2p23.3 major facilitator superfamily domain containing 2B protein-coding MFSD2B major facilitator superfamily domain containing 2B O major facilitator superfamily domain-containing protein 2B 20121230 -9606 388939 C2orf71 - - HGNC:34383|MIM:613425|Ensembl:ENSG00000179270|Vega:OTTHUMG00000152024 2 2p23.2 chromosome 2 open reading frame 71 protein-coding C2orf71 chromosome 2 open reading frame 71 O uncharacterized protein C2orf71 20121230 -9606 388942 LOC388942 - - - 2 2p21 uncharacterized LOC388942 miscRNA - - - - 20121230 -9606 388946 TMEM247 - - HGNC:42967|Ensembl:ENSG00000187600|Vega:OTTHUMG00000153137 2 2p21 transmembrane protein 247 protein-coding TMEM247 transmembrane protein 247 O transmembrane protein ENSP00000343375 20121230 -9606 388948 LOC388948 - - - 2 2p21 uncharacterized LOC388948 miscRNA - - - - 20121230 -9606 388951 TSPYL6 - - HGNC:14521|Ensembl:ENSG00000178021|HPRD:11652|Vega:OTTHUMG00000151823 2 2p16.2 TSPY-like 6 protein-coding TSPYL6 TSPY-like 6 O TSPY-like protein 6|testis-specific Y-encoded-like protein 6 20121230 -9606 388955 LOC388955 - - - 2 2p15 PRELI domain-containing protein 1, mitochondrial pseudogene pseudo - - - - 20121230 -9606 388960 C2orf78 - COG5373|hCG1989538 HGNC:34349|Ensembl:ENSG00000187833|Vega:OTTHUMG00000152819 2 2p13.1 chromosome 2 open reading frame 78 protein-coding C2orf78 chromosome 2 open reading frame 78 O uncharacterized protein C2orf78 20121230 -9606 388962 BOLA3 - MMDS2 HGNC:24415|MIM:613183|Ensembl:ENSG00000163170|HPRD:14209|Vega:OTTHUMG00000152834 2 2p13.1 bolA homolog 3 (E. coli) protein-coding BOLA3 bolA homolog 3 (E. coli) O bolA-like protein 3 20121230 -9606 388963 C2orf81 - hCG40743 HGNC:34350|Ensembl:ENSG00000159239|Vega:OTTHUMG00000164184 2 2p13.1 chromosome 2 open reading frame 81 protein-coding C2orf81 chromosome 2 open reading frame 81 O Uncharacterized protein ENSP00000290390|uncharacterized protein C2orf81 20121230 -9606 388965 FUNDC2P2 - - HGNC:17247|HPRD:18390 2 2p11.2 FUN14 domain containing 2 pseudogene 2 pseudo FUNDC2P2 FUN14 domain containing 2 pseudogene 2 O - 20121230 -9606 388969 C2orf68 - - HGNC:34353|Ensembl:ENSG00000168887|HPRD:18391|Vega:OTTHUMG00000153088 2 2p11.2 chromosome 2 open reading frame 68 protein-coding C2orf68 chromosome 2 open reading frame 68 O UPF0561 protein C2orf68 20121230 -9606 388996 LOC388996 - - - 2 2p11.1 otopetrin 1 pseudogene pseudo - - - - 20121230 -9606 389000 SLC9B1P2 - NHEDC1P2 HGNC:37493 2 2p11.1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 2 pseudo SLC9B1P2 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 2 O - 20121230 -9606 389015 SLC9A4 - NHE4 HGNC:11077|MIM:600531|Ensembl:ENSG00000180251|HPRD:15973|Vega:OTTHUMG00000153093 2 2q12.1 solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4 protein-coding SLC9A4 solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4 O NHE-4|Na(+)/H(+) exchanger 4|sodium/hydrogen exchanger 4|solute carrier family 9 (sodium/hydrogen exchanger)|solute carrier family 9 (sodium/hydrogen exchanger), member 4|solute carrier family 9 member 4 20121230 -9606 389023 LOC389023 - - - 2 2q14.1 uncharacterized LOC389023 miscRNA - - - - 20121230 -9606 389033 LOC389033 - - - 2 2q21.1 placenta-specific 9 pseudogene pseudo - - - - 20121230 -9606 389036 ACT - - - 2 2q21.1 actin-like protein (ACT) gene protein-coding - - - - 20111109 -9606 389043 LOC389043 - - - 2 2q21.1 uncharacterized LOC389043 miscRNA - - - - 20121230 -9606 389053 HNRNPKP2 - - HGNC:42375 2 2q22.1 heterogeneous nuclear ribonucleoprotein K pseudogene 2 pseudo HNRNPKP2 heterogeneous nuclear ribonucleoprotein K pseudogene 2 O - 20121230 -9606 389058 SP5 - - HGNC:14529|MIM:609391|Ensembl:ENSG00000204335|HPRD:18088|Vega:OTTHUMG00000154053 2 2q31.1 Sp5 transcription factor protein-coding SP5 Sp5 transcription factor O transcription factor Sp5 20121230 -9606 389064 FLJ46347 - - HPRD:13532 2 2q31.1 uncharacterized LOC389064 unknown - - - - 20111109 -9606 389072 PLEKHM3 - DAPR|PLEKHM1L HGNC:34006|Ensembl:ENSG00000178385|Vega:OTTHUMG00000154781 2 2q33.3 pleckstrin homology domain containing, family M, member 3 protein-coding PLEKHM3 pleckstrin homology domain containing, family M, member 3 O PH domain-containing family M member 3|differentiation associated protein|pleckstrin homology domain-containing family M member 3 20121230 -9606 389073 C2orf80 - - HGNC:34352|Ensembl:ENSG00000188674|Vega:OTTHUMG00000154751 2 2q34 chromosome 2 open reading frame 80 protein-coding C2orf80 chromosome 2 open reading frame 80 O uncharacterized protein C2orf80 20121230 -9606 389075 RESP18 - - HGNC:33762|MIM:612721|Ensembl:ENSG00000182698|HPRD:17968|Vega:OTTHUMG00000150223 2 2q35 regulated endocrine-specific protein 18 protein-coding RESP18 regulated endocrine-specific protein 18 O regulated endocrine-specific protein 18 homolog 20121230 -9606 389084 C2orf82 UNQ830/PRO1757 UNQ830 HGNC:33763|Ensembl:ENSG00000182600|HPRD:15620|Vega:OTTHUMG00000133273 2 2q37.1 chromosome 2 open reading frame 82 protein-coding C2orf82 chromosome 2 open reading frame 82 O ASCL830|uncharacterized protein C2orf82 20121230 -9606 389090 OR6B2 - OR2-1|OR6B2P HGNC:15041|Ensembl:ENSG00000182083|HPRD:15056|Vega:OTTHUMG00000152400 2 2q37.3 olfactory receptor, family 6, subfamily B, member 2 protein-coding OR6B2 olfactory receptor, family 6, subfamily B, member 2 O olfactory receptor 6B2|olfactory receptor OR2-1|olfactory receptor, family 6, subfamily B, member 2 pseudogene 20121230 -9606 389101 RPL23AP43 - RPL23A_16_360 HGNC:35751 3 3p22.3 ribosomal protein L23a pseudogene 43 pseudo RPL23AP43 ribosomal protein L23a pseudogene 43 O - 20121230 -9606 389102 YPLR6490 UNQ6490 PRO21339 - 3 3p22.3 uncharacterized LOC389102 unknown - - - - 20121230 -9606 389112 RPS27P4 - RPS27_5_366 HGNC:16694 3 3p22.1 ribosomal protein S27 pseudogene 4 pseudo RPS27P4 ribosomal protein S27 pseudogene 4 O - 20121230 -9606 389114 ZNF662 - - HGNC:31930|Ensembl:ENSG00000182983|HPRD:13516|Vega:OTTHUMG00000133041 3 3p22.1 zinc finger protein 662 protein-coding ZNF662 zinc finger protein 662 O - 20121230 -9606 389118 CDHR4 UNQ9392/PRO34300 CDH29|PRO34300 HGNC:34527|Ensembl:ENSG00000187492|HPRD:17378|Vega:OTTHUMG00000158198 3 3p21.31 cadherin-related family member 4 protein-coding CDHR4 cadherin-related family member 4 O Cadherin-like protein UNQ9392/PRO34300|VLLR9392|cadherin-like 29|cadherin-like protein 29 20121230 -9606 389119 FAM212A - C3orf54|INKA1 HGNC:32480|Ensembl:ENSG00000185614|HPRD:14210|Vega:OTTHUMG00000158268 3 3p21.31 family with sequence similarity 212, member A protein-coding FAM212A family with sequence similarity 212, member A O protein FAM212A 20121230 -9606 389120 ACTBP13 - - HGNC:44626 3 3p21.31 actin, beta pseudogene 13 pseudo ACTBP13 actin, beta pseudogene 13 O - 20121230 -9606 389123 IQCF2 - - HGNC:31815|Ensembl:ENSG00000184345|HPRD:13745|Vega:OTTHUMG00000156914 3 3p21.2 IQ motif containing F2 protein-coding IQCF2 IQ motif containing F2 O IQ domain-containing protein F2 20121230 -9606 389124 IQCF5 - - HGNC:35159|Ensembl:ENSG00000214681|Vega:OTTHUMG00000156913 3 3p21.2 IQ motif containing F5 protein-coding IQCF5 IQ motif containing F5 O IQ domain-containing protein F5 20121230 -9606 389125 MUSTN1 - MUSTANG HGNC:22144|Ensembl:ENSG00000243696|HPRD:14790|Vega:OTTHUMG00000159024 3 3p21.1 musculoskeletal, embryonic nuclear protein 1 protein-coding MUSTN1 musculoskeletal, embryonic nuclear protein 1 O musculoskeletal embryonic nuclear protein 1|musculoskeletal temporally activated novel 20121230 -9606 389127 RPS10P10 - RPS10_4_378 HGNC:37034 3 3p14.2 ribosomal protein S10 pseudogene 10 pseudo RPS10P10 ribosomal protein S10 pseudogene 10 O - 20121230 -9606 389136 VGLL3 - VGL-3|VGL3 HGNC:24327|MIM:609980|Ensembl:ENSG00000206538|HPRD:13431|Vega:OTTHUMG00000158984 3 3p12.1 vestigial like 3 (Drosophila) protein-coding VGLL3 vestigial like 3 (Drosophila) O colon carcinoma related protein|transcription cofactor vestigial-like protein 3|vestigial-like 3 20121230 -9606 389137 ARMC10P1 - - HGNC:43646 3 3q11.2 armadillo repeat containing 10 pseudogene 1 pseudo ARMC10P1 armadillo repeat containing 10 pseudogene 1 O - 20121230 -9606 389141 RPSAP29 - RPSA_6_392 HGNC:36680 3 3q13.13 ribosomal protein SA pseudogene 29 pseudo RPSAP29 ribosomal protein SA pseudogene 29 O - 20121230 -9606 389144 OR7E130P - OST702 HGNC:15053 3 3q21.2 olfactory receptor, family 7, subfamily E, member 130 pseudogene pseudo OR7E130P olfactory receptor, family 7, subfamily E, member 130 pseudogene O - 20121230 -9606 389151 PRR23B - - HGNC:33764|Ensembl:ENSG00000184814|HPRD:18392|Vega:OTTHUMG00000160633 3 3q23 proline rich 23B protein-coding PRR23B proline rich 23B O proline-rich protein 23B 20121230 -9606 389152 PRR23C - - HGNC:37173|Ensembl:ENSG00000233701|HPRD:13526|Vega:OTTHUMG00000160634 3 3q23 proline rich 23C protein-coding PRR23C proline rich 23C O proline-rich protein 23A|proline-rich protein 23C 20121230 -9606 389156 RPL21P39 - RPL21_14_415 HGNC:36127 3 3q24 ribosomal protein L21 pseudogene 39 pseudo RPL21P39 ribosomal protein L21 pseudogene 39 O - 20121230 -9606 389158 PLSCR5 - - HGNC:19952|Ensembl:ENSG00000231213|Vega:OTTHUMG00000159437 3 3q24 phospholipid scramblase family, member 5 protein-coding PLSCR5 phospholipid scramblase family, member 5 O phospholipid scramblase family member 5 20121230 -9606 389160 CPHL1P - CPHL1 HGNC:31714 3 3q25.1 ceruloplasmin and hephaestin-like 1 pseudogene pseudo CPHL1P ceruloplasmin and hephaestin-like 1 pseudogene O - 20121230 -9606 389161 ANKUB1 - C3orf16 HGNC:29642|Ensembl:ENSG00000206199|Vega:OTTHUMG00000159615 3 3q25.1 ankyrin repeat and ubiquitin domain containing 1 protein-coding ANKUB1 ankyrin repeat and ubiquitin domain containing 1 O ankyrin repeat and ubiquitin domain-containing 1|protein ANKUB1 20121230 -9606 389168 SETP14 - - HGNC:42933 3 3q25.31 SET pseudogene 14 pseudo SETP14 SET pseudogene 14 O - 20121230 -9606 389170 LEKR1 - - HGNC:33765|MIM:613536|Ensembl:ENSG00000178110|Ensembl:ENSG00000197980|HPRD:16915|Vega:OTTHUMG00000158648 3 3q25.31 leucine, glutamate and lysine rich 1 protein-coding LEKR1 leucine, glutamate and lysine rich 1 O leucine-, glutamate- and lysine-rich protein 1 20121230 -9606 389177 TMEM212 - - HGNC:34295|Ensembl:ENSG00000186329|Vega:OTTHUMG00000156839 3 3q26.31 transmembrane protein 212 protein-coding TMEM212 transmembrane protein 212 O - 20121230 -9606 389179 EEF1A1P8 - EEF1AL6 HGNC:3203 3 3q27.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 8 pseudo EEF1A1P8 eukaryotic translation elongation factor 1 alpha 1 pseudogene 8 O - 20121230 -9606 389180 5-HT3C2 - - - 3 3q27.1 5-hydroxytryptamine (serotonin) receptor 3, family member E pseudogene pseudo - - - - 20121230 -9606 389197 C4orf50 - - HGNC:33766|Ensembl:ENSG00000181215|HPRD:13538|Vega:OTTHUMG00000149971 4 4p16.2 chromosome 4 open reading frame 50 protein-coding C4orf50 chromosome 4 open reading frame 50 O uncharacterized protein C4orf50 20121230 -9606 389199 LOC389199 - - HPRD:14211 4 4p16.1 uncharacterized LOC389199 unknown - - - - 20121230 -9606 389203 C4orf52 - - HGNC:37260|Ensembl:ENSG00000250317|Vega:OTTHUMG00000160330 4 4p15.2 chromosome 4 open reading frame 52 protein-coding C4orf52 chromosome 4 open reading frame 52 O uncharacterized protein C4orf52 20121230 -9606 389206 BEND4 - CCDC4 HGNC:23815|Ensembl:ENSG00000188848|HPRD:13481|Vega:OTTHUMG00000160531 4 4p13 BEN domain containing 4 protein-coding BEND4 BEN domain containing 4 O BEN domain-containing protein 4|coiled-coil domain containing 4|coiled-coil domain-containing protein 4 20121230 -9606 389207 GRXCR1 - DFNB25 HGNC:31673|MIM:613283|Ensembl:ENSG00000215203|Vega:OTTHUMG00000160434 4 4p13 glutaredoxin, cysteine rich 1 protein-coding GRXCR1 glutaredoxin, cysteine rich 1 O glutaredoxin domain-containing cysteine-rich protein 1 20121230 -9606 389208 TMPRSS11F - - HGNC:29994|Ensembl:ENSG00000198092|HPRD:16908|Vega:OTTHUMG00000129307 4 4q13.2 transmembrane protease, serine 11F protein-coding TMPRSS11F transmembrane protease, serine 11F O airway trypsin-like protease 4|transmembrane protease serine 11F 20121230 -9606 389217 SETP20 - - HGNC:42939 4 4q25 SET pseudogene 20 pseudo SETP20 SET pseudogene 20 O - 20121230 -9606 389223 EEF1A1P35 - - HGNC:37913 4 4q28.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 35 pseudo EEF1A1P35 eukaryotic translation elongation factor 1 alpha 1 pseudogene 35 O - 20121230 -9606 389240 NACA3P - NACA3 HGNC:33442 4 4q32.3 NACA family member 3 pseudogene pseudo NACA3P NACA family member 3 pseudogene O - 20121230 -9606 389246 VTI1BP2 - - HGNC:43728 4 4q35.1 vesicle transport through interaction with t-SNAREs 1B pseudogene 2 pseudo VTI1BP2 vesicle transport through interaction with t-SNAREs 1B pseudogene 2 O - 20121230 -9606 389247 LOC389247 - - - 4 4q35.1 uncharacterized LOC389247 miscRNA - - - - 20121230 -9606 389249 LOC389249 - - - 4 4q35.2 peroxiredoxin 6 pseudogene pseudo - - - - 20121230 -9606 389257 LRRC14B - - HGNC:37268 5 5p15.33 leucine rich repeat containing 14B protein-coding LRRC14B leucine rich repeat containing 14B O leucine-rich repeat-containing protein 14B 20121230 -9606 389273 LOC389273 - - - 5 5p15.2 uncharacterized LOC389273 unknown - - - - 20120622 -9606 389289 ANXA2R - AX2R|AXIIR|C5orf39 HGNC:33463|MIM:611296|HPRD:18393 5 5p12 annexin A2 receptor protein-coding ANXA2R annexin A2 receptor O annexin II receptor|annexin-2 receptor 20121230 -9606 389293 ISCA1P1 - ISCA1L HGNC:33263 5 5q12.1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 1 pseudo ISCA1P1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 389320 C5orf48 - - HGNC:33767|Ensembl:ENSG00000196900|HPRD:13399|Vega:OTTHUMG00000128944 5 5q23.2 chromosome 5 open reading frame 48 protein-coding C5orf48 chromosome 5 open reading frame 48 O uncharacterized protein C5orf48 20121230 -9606 389322 HNRNPKP1 - - HGNC:42374 5 5q23.2 heterogeneous nuclear ribonucleoprotein K pseudogene 1 pseudo HNRNPKP1 heterogeneous nuclear ribonucleoprotein K pseudogene 1 O - 20121230 -9606 389332 LOC389332 - - - 5 5q31.1 uncharacterized LOC389332 miscRNA - - - - 20121230 -9606 389333 PROB1 - C5orf65 HGNC:41906|Ensembl:ENSG00000228672 5 5q31.2 proline-rich basic protein 1 protein-coding PROB1 proline-rich basic protein 1 O weakly similar to basic proline-rich protein 20121230 -9606 389336 C5orf46 UNQ472/PRO839 - HGNC:33768|Ensembl:ENSG00000178776|HPRD:14491|Vega:OTTHUMG00000163420 5 5q32 chromosome 5 open reading frame 46 protein-coding C5orf46 chromosome 5 open reading frame 46 O uncharacterized protein C5orf46 20121230 -9606 389337 ARHGEF37 - - HGNC:34430|Ensembl:ENSG00000183111|HPRD:13454|Vega:OTTHUMG00000163491 5 5q32 Rho guanine nucleotide exchange factor (GEF) 37 protein-coding ARHGEF37 Rho guanine nucleotide exchange factor (GEF) 37 O rho guanine nucleotide exchange factor 37 20121230 -9606 389342 RPL10P9 - RPL10_1_637 HGNC:35579 5 5q34 ribosomal protein L10 pseudogene 9 pseudo RPL10P9 ribosomal protein L10 pseudogene 9 O - 20121230 -9606 389362 PSMG4 RP11-506K6.3 C6orf86|PAC4|bA506K6.2 HGNC:21108|Ensembl:ENSG00000180822|Vega:OTTHUMG00000014142 6 6p25.2 proteasome (prosome, macropain) assembly chaperone 4 protein-coding PSMG4 proteasome (prosome, macropain) assembly chaperone 4 O PAC-4|hPAC4|proteasome assembly chaperone 4 20121230 -9606 389376 SFTA2 DADB-160J14.6 GSGL541|SFTPG|UNQ541 HGNC:18386|Ensembl:ENSG00000196260|HPRD:18265|Vega:OTTHUMG00000031183 6 6p21.33 surfactant associated 2 protein-coding SFTA2 surfactant associated 2 O surfactant associated protein G|surfactant-associated protein 2|surfactant-associated protein G 20121230 -9606 389383 CLPSL2 RP3-510O8.5 C6orf126|UNQ3045|dJ510O8.5 HGNC:21250|Ensembl:ENSG00000196748|HPRD:15616|Vega:OTTHUMG00000014581 6 6p21.31 colipase-like 2 protein-coding CLPSL2 colipase-like 2 O AAAL3045|colipase-like protein 2|colipase-like protein C6orf126 20121230 -9606 389384 C6orf222 - - HGNC:33769|Ensembl:ENSG00000189325|HPRD:16824|Vega:OTTHUMG00000014591 6 6p21.31 chromosome 6 open reading frame 222 protein-coding C6orf222 chromosome 6 open reading frame 222 O uncharacterized protein C6orf222 20121230 -9606 389386 LAP3P2 - - HGNC:42365 6 6p21.2 leucine aminopeptidase 3 pseudogene 2 pseudo LAP3P2 leucine aminopeptidase 3 pseudogene 2 O - 20121230 -9606 389395 HNRNPA3P4 - - HGNC:39773 6 6p12.3 heterogeneous nuclear ribonucleoprotein A3 pseudogene 4 pseudo HNRNPA3P4 heterogeneous nuclear ribonucleoprotein A3 pseudogene 4 O - 20121230 -9606 389396 GLYATL3 RP11-28H17.5 C6orf140|bA28H17.2 HGNC:21349|MIM:614763|Ensembl:ENSG00000203972|Vega:OTTHUMG00000014818 6 6p12.3 glycine-N-acyltransferase-like 3 protein-coding GLYATL3 glycine-N-acyltransferase-like 3 O glycine N-acyltransferase-like protein 3 20121230 -9606 389400 GFRAL UNQ9356/PRO34128 C6orf144|GRAL|UNQ9356|bA360D14.1 HGNC:32789|Ensembl:ENSG00000187871|HPRD:15622|Vega:OTTHUMG00000014900 6 6p12.1 GDNF family receptor alpha like protein-coding GFRAL GDNF family receptor alpha like O GDNF family receptor alpha-like|IVFI9356 20121230 -9606 389404 RPL9P18 - RPL9_6_709 HGNC:36954 6 6q12 ribosomal protein L9 pseudogene 18 pseudo RPL9P18 ribosomal protein L9 pseudogene 18 O - 20121230 -9606 389405 LOC389405 RP11-307F22.3 - - 6 6q12 notch 5-like protein-coding - - - EGF-like-domain, multiple 10 20120511 -9606 389416 BDH2P1 - DHRS6P1|bA758C21.1 HGNC:21476 6 6q16.2 3-hydroxybutyrate dehydrogenase, type 2 pseudogene 1 pseudo BDH2P1 3-hydroxybutyrate dehydrogenase, type 2 pseudogene 1 O - 20121230 -9606 389421 LIN28B RP3-522O2.2 CSDD2 HGNC:32207|MIM:611044|Ensembl:ENSG00000187772|HPRD:13366|Vega:OTTHUMG00000015290 6 6q21 lin-28 homolog B (C. elegans) protein-coding LIN28B lin-28 homolog B (C. elegans) O Lin-28.2|lin-28B|protein lin-28 homolog B 20121230 -9606 389422 C6orf183 RP11-487F23.3 bA487F23.3 HGNC:21562 6 6q21 chromosome 6 open reading frame 183 protein-coding C6orf183 chromosome 6 open reading frame 183 O transmembrane protein FLJ37396 20121230 -9606 389424 PA2G4P5 - PA2G4L2 HGNC:32218 6 6q21 proliferation-associated 2G4 pseudogene 5 pseudo PA2G4P5 proliferation-associated 2G4 pseudogene 5 O - 20121230 -9606 389428 RPL5P18 - RPL5_11_750 HGNC:36640 6 6q22.33 ribosomal protein L5 pseudogene 18 pseudo RPL5P18 ribosomal protein L5 pseudogene 18 O - 20121230 -9606 389432 SAMD5 RP5-875H10.1 dJ875H10.1 HGNC:21180|Ensembl:ENSG00000203727|Vega:OTTHUMG00000015767 6 6q24.3 sterile alpha motif domain containing 5 protein-coding SAMD5 sterile alpha motif domain containing 5 O SAM domain containing 1|SAM domain-containing protein 5|sterile alpha motif domain-containing protein 5 20121230 -9606 389434 IYD - C6orf71|DEHAL1|TDH4|dJ422F24.1 HGNC:21071|MIM:612025|Ensembl:ENSG00000009765|HPRD:16668|Vega:OTTHUMG00000016347 6 6q25.1 iodotyrosine deiodinase protein-coding IYD iodotyrosine deiodinase O IYD-1|iodotyrosine dehalogenase 1 20121230 -9606 389435 RPL27AP6 hCG_21078 RPL27A_4_770 HGNC:35977 6 6q25.2 ribosomal protein L27a pseudogene 6 pseudo RPL27AP6 ribosomal protein L27a pseudogene 6 O - 20121230 -9606 389458 LOC389458 - - HPRD:14212 7 7p22.1 uncharacterized LOC389458 miscRNA - - - - 20121230 -9606 389465 LOC389465 - - - 7 7p21.3 Sjogren syndrome antigen B pseudogene pseudo - - - - 20121230 -9606 389472 RPS26P32 - RPS26|RPS26_13_792 HGNC:35753 7 7p15.3 ribosomal protein S26 pseudogene 32 pseudo RPS26P32 ribosomal protein S26 pseudogene 32 O - 20121230 -9606 389473 LOC389473 - - - 7 7p15.3 chromosome 5 open reading frame 13 pseudogene pseudo - - - - 20121230 -9606 389493 NUPR1L - - HGNC:44164|Ensembl:ENSG00000185290|Vega:OTTHUMG00000156224 7 7p11.2 nuclear protein, transcriptional regulator, 1-like protein-coding NUPR1L nuclear protein, transcriptional regulator, 1-like O nuclear transcriptional regulator 1-like protein 20121230 -9606 389517 SPDYE8P - - HGNC:33771 7 7q11.23 speedy homolog E8 (Xenopus laevis), pseudogene pseudo SPDYE8P speedy homolog E8 (Xenopus laevis), pseudogene O - 20121230 -9606 389523 GATSL1 - - HGNC:37072|Ensembl:ENSG00000183086|Vega:OTTHUMG00000156202 7 7q11.23 GATS protein-like 1 protein-coding GATSL1 GATS protein-like 1 O GATS-like protein 1 20121230 -9606 389524 GTF2IRD2B - - HGNC:33125|MIM:608900|Ensembl:ENSG00000174428|HPRD:12327|Vega:OTTHUMG00000156015 7 7q11.23 GTF2I repeat domain containing 2B protein-coding GTF2IRD2B GTF2I repeat domain containing 2B O GTF2I repeat domain-containing protein 2B|GTF2IRD2 beta|general transcription factor 2 I repeat domain-containing 2 beta|general transcription factor II-I repeat domain-containing protein 2B|transcription factor GTF2IRD2-beta 20121230 -9606 389537 OR7E38P - OR7E76|OST127 HGNC:8411 7 7q21.3 olfactory receptor, family 7, subfamily E, member 38 pseudogene pseudo OR7E38P olfactory receptor, family 7, subfamily E, member 38 pseudogene O - 20121230 -9606 389538 MGC72080 - - - 7 7q21.3 MGC72080 pseudogene pseudo - - - - 20121230 -9606 389541 LAMTOR4 - C7orf59 HGNC:33772|Ensembl:ENSG00000188186|HPRD:17380|Vega:OTTHUMG00000154854 7 7q22.1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 protein-coding LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 O UPF0539 protein C7orf59 20121230 -9606 389549 FEZF1 - FEZ|ZNF312B HGNC:22788|MIM:613301|Ensembl:ENSG00000128610|HPRD:18614|Vega:OTTHUMG00000157091 7 7q31.32 FEZ family zinc finger 1 protein-coding FEZF1 FEZ family zinc finger 1 O fez family zinc finger protein 1|zinc finger protein 312B 20121230 -9606 389558 FAM180A UNQ1940/PRO4423 UNQ1940 HGNC:33773|Ensembl:ENSG00000189320|HPRD:15613|Vega:OTTHUMG00000155537 7 7q33 family with sequence similarity 180, member A protein-coding FAM180A family with sequence similarity 180, member A O HWKM1940|protein FAM180A 20121230 -9606 389599 STRADBP1 tcag7.875 ALS2CR2P1|STLK6ps1 HGNC:22478 7 7q36.1 STE20-related kinase adaptor beta pseudogene 1 pseudo STRADBP1 STE20-related kinase adaptor beta pseudogene 1 O - 20121230 -9606 389602 LOC389602 tcag7.1275 - - 7 7q36.3 uncharacterized LOC389602 unknown - - - - 20121230 -9606 389607 LOC389607 - - HPRD:18394 8 8p23.3 uncharacterized LOC389607 unknown - - - - 20121230 -9606 389610 XKR5 UNQ2754/PRO6493 HARL2754|UNQ2754|XRG5A|XRG5BM HGNC:20782|HPRD:18308 8 8p23.1 XK, Kell blood group complex subunit-related family, member 5 protein-coding XKR5 XK, Kell blood group complex subunit-related family, member 5 O X Kell blood group precursor-related family, member 5|XK-related protein 5|XK-related protein 5a 20121230 -9606 389611 FAM90A3P - FAM90A3 HGNC:32251|MIM:613042 8 8p23.1 family with sequence similarity 90, member A3, pseudogene pseudo FAM90A3P family with sequence similarity 90, member A3, pseudogene O - 20121209 -9606 389616 OR7E125P - PJCG6 HGNC:15098 8 8p23.1 olfactory receptor, family 7, subfamily E, member 125 pseudogene pseudo OR7E125P olfactory receptor, family 7, subfamily E, member 125 pseudogene O - 20121230 -9606 389618 FAM90A6P - - HGNC:32254 8 8p23.1 family with sequence similarity 90, member A6 pseudogene pseudo FAM90A6P family with sequence similarity 90, member A6, pseudogene O - 20121209 -9606 389626 OR7E161P - - HGNC:31234 8 8p23.1 olfactory receptor, family 7, subfamily E, member 161 pseudogene pseudo OR7E161P olfactory receptor, family 7, subfamily E, member 161 pseudogene O - 20121230 -9606 389630 FAM90A15P - FAM90A15 HGNC:32263|MIM:613051 8 8p23.1 putative protein FAM90A15 pseudo FAM90A15P family with sequence similarity 90, member A15, pseudogene O - 20121209 -9606 389631 ZNF705C - ZNF705CP HGNC:32283 8 8p23.1 zinc finger protein 705C, pseudogene pseudo ZNF705C zinc finger protein 705C, pseudogene O - 20121230 -9606 389633 FAM90A25P - - HGNC:32246 8 8p23.1 family with sequence similarity 90, member A7 pseudogene pseudo FAM90A25P family with sequence similarity 90, member A25, pseudogene O - 20121230 -9606 389634 LOC389634 - - HPRD:18395 12 12p13.31 uncharacterized LOC389634 miscRNA - - - - 20121230 -9606 389641 LOC389641 - - - 8 8p21.3 uncharacterized LOC389641 miscRNA - - - - 20121230 -9606 389643 NUGGC HMFN0672 C8orf80|SLIP-GC HGNC:33550|Ensembl:ENSG00000189233|Vega:OTTHUMG00000155970 8 8p21.1 nuclear GTPase, germinal center associated protein-coding NUGGC nuclear GTPase, germinal center associated O GTPase SLIP-GC|nuclear GTPase SLIP-GC|speckled-like pattern in the germinal center 20121230 -9606 389644 RPL5P22 - RPL5_12_886 HGNC:35695 8 8p21.1 ribosomal protein L5 pseudogene 22 pseudo RPL5P22 ribosomal protein L5 pseudogene 22 O - 20121230 -9606 389649 C8orf86 - - HGNC:33774|Ensembl:ENSG00000196166|HPRD:13474|Vega:OTTHUMG00000163992 8 8p11.22 chromosome 8 open reading frame 86 protein-coding C8orf86 chromosome 8 open reading frame 86 O uncharacterized protein C8orf86 20121230 -9606 389652 ASNSP1 - ASNSL1 HGNC:754 8 8q11.1 asparagine synthetase pseudogene 1 pseudo ASNSP1 asparagine synthetase pseudogene 1 O - 20121230 -9606 389655 RPL29P19 - RPL29_7_901 HGNC:35508 8 8q11.21 ribosomal protein L29 pseudogene 19 pseudo RPL29P19 ribosomal protein L29 pseudogene 19 O - 20121230 -9606 389658 FAM150A UNQ9433/PRO34745 UNQ9433 HGNC:33775|Ensembl:ENSG00000196711|HPRD:15623|Vega:OTTHUMG00000164256 8 8q11.23 family with sequence similarity 150, member A protein-coding FAM150A family with sequence similarity 150, member A O RPLK9433|protein FAM150A 20121230 -9606 389662 SEPT10P1 - DKFZP564M1416 HGNC:40018 8 8q12.1 septin 10 pseudogene 1 pseudo SEPT10P1 septin 10 pseudogene 1 O - 20121230 -9606 389668 XKR9 - XRG9 HGNC:20937|Ensembl:ENSG00000221947|HPRD:18309|Vega:OTTHUMG00000164431 8 8q13.3 XK, Kell blood group complex subunit-related family, member 9 protein-coding XKR9 XK, Kell blood group complex subunit-related family, member 9 O X Kell blood group precursor-related family, member 9|XK-related protein 9 20121230 -9606 389672 RPSAP47 hCG_1984468 RPSA_19_921 HGNC:36162 8 8q21.13 ribosomal protein SA pseudogene 47 pseudo RPSAP47 ribosomal protein SA pseudogene 47 O - 20121230 -9606 389674 HNRNPA1P4 - HNRPA1P4 HGNC:32234 8 8q21.13 heterogeneous nuclear ribonucleoprotein A1 pseudogene 4 pseudo HNRNPA1P4 heterogeneous nuclear ribonucleoprotein A1 pseudogene 4 O - 20121230 -9606 389676 C8orf87 - - HGNC:42974|Ensembl:ENSG00000254318|Vega:OTTHUMG00000164196 8 8q22.1 chromosome 8 open reading frame 87 protein-coding C8orf87 chromosome 8 open reading frame 87 O uncharacterized protein C8orf87 20121230 -9606 389677 RBM12B - MGC:33837 HGNC:32310|Ensembl:ENSG00000183808|HPRD:14213|Vega:OTTHUMG00000164317 8 8q22.1 RNA binding motif protein 12B protein-coding RBM12B RNA binding motif protein 12B O RNA-binding motif protein 12B|RNA-binding protein 12B 20121230 -9606 389690 MROH5 - - HGNC:42976|Ensembl:ENSG00000226807|HPRD:13480|Vega:OTTHUMG00000155944 8 8q24.3 maestro heat-like repeat family member 5 protein-coding MROH5 maestro heat-like repeat family member 5 O uncharacterized protein LOC389690 20121230 -9606 389692 MAFA - RIPE3b1|hMafA HGNC:23145|MIM:610303|Ensembl:ENSG00000182759|HPRD:14346|Vega:OTTHUMG00000165037 8 8q24.3 v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian) protein-coding MAFA v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian) O pancreatic beta-cell-specific transcriptional activator|transcription factor MafA|transcription factor RIPE3b1 20121230 -9606 389705 LOC389705 - - - 9 9p22.3 chromosome 4 open reading frame 27 pseudogene pseudo - - - - 20121230 -9606 389715 FAM205B RP11-251H13.2 C9orf144 HGNC:24504 9 9p13.2 transmembrane protein C9orf144B pseudogene pseudo FAM205B family with sequence similarity 205, member B O - 20121230 -9606 389727 LOC389727 - - - 9 9p12 FK506 binding protein 4, 59kDa pseudogene pseudo - - - - 20121209 -9606 389730 SPATA31A6 RP11-366N18.1 FAM75A6 HGNC:32006|Ensembl:ENSG00000185775|Vega:OTTHUMG00000013224 9 9p11.2 SPATA31 subfamily A, member 6 protein-coding SPATA31A6 SPATA31 subfamily A, member 6 O family with sequence similarity 75, member A6|protein FAM75A6 20121230 -9606 389740 GPR116P1 - - HGNC:32922 9 9q13 G protein-coupled receptor 116 pseudogene 1 pseudo GPR116P1 G protein-coupled receptor 116 pseudogene 1 O - 20121230 -9606 389741 MGC21881 - - HPRD:17520 9 9q21.11 uncharacterized locus MGC21881 miscRNA - - - - 20121209 -9606 389747 MEP1AP3 - - HGNC:39137 9 9p12 meprin A, alpha pseudogene 3 pseudo MEP1AP3 meprin A, alpha pseudogene 3 O - 20121230 -9606 389756 AQP7P2 - - HGNC:32049 9 9q21.11 aquaporin 7 pseudogene 2 pseudo AQP7P2 aquaporin 7 pseudogene 2 O - 20121230 -9606 389761 SPATA31D4 - FAM75D4 HGNC:38601 9 9q21.32 SPATA31 subfamily D, member 4 protein-coding SPATA31D4 SPATA31 subfamily D, member 4 O FAM75-like protein FLJ43859|family with sequence similarity 75, member D4|putative protein FAM75D4 20121230 -9606 389762 SPATA31D3 - FAM75D3 HGNC:38603 9 9q21.32 SPATA31 subfamily D, member 3 protein-coding SPATA31D3 SPATA31 subfamily D, member 3 O FAM75-like protein FLJ44082|Putative FAM75-like protein FLJ44082|family with sequence similarity 75, member D3|putative protein FAM75D3 20121230 -9606 389763 SPATA31D1 - FAM75D1 HGNC:37283|Ensembl:ENSG00000214929|HPRD:13531|Vega:OTTHUMG00000169122 9 9q21.32 SPATA31 subfamily D, member 1 protein-coding SPATA31D1 SPATA31 subfamily D, member 1 O FAM75-like protein FLJ46321|family with sequence similarity 75, member D1|protein FAM75D1 20121230 -9606 389765 LOC389765 - - - 9 9q21.33 kinesin family member 27 pseudogene pseudo - - - - 20121230 -9606 389766 C9orf153 - bA507D14.1 HGNC:31456|Ensembl:ENSG00000187753|HPRD:16677|Vega:OTTHUMG00000020134 9 9q21.33 chromosome 9 open reading frame 153 protein-coding C9orf153 chromosome 9 open reading frame 153 O uncharacterized protein C9orf153 20121230 -9606 389768 LOC389768 - - - 9 9q22.1 potassium channel tetramerisation domain containing 1 pseudogene pseudo - - - - 20121230 -9606 389787 LOC389787 - - - 9 9q33.1 tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 389791 LOC389791 - - HPRD:18396 9 9q34.11 uncharacterized LOC389791 miscRNA - - - - 20121230 -9606 389792 IER5L - bA247A12.2 HGNC:23679|Ensembl:ENSG00000188483|HPRD:17128|Vega:OTTHUMG00000020773 9 9q34.11 immediate early response 5-like protein-coding IER5L immediate early response 5-like O immediate early response gene 5-like protein 20121230 -9606 389799 C9orf171 RP11-738I14.8 - HGNC:33776|Ensembl:ENSG00000188523|HPRD:13522|Vega:OTTHUMG00000131684 9 9q34.13 chromosome 9 open reading frame 171 protein-coding C9orf171 chromosome 9 open reading frame 171 O uncharacterized protein C9orf171 20121230 -9606 389812 LCN15 RP11-216L13.5 PRO6093|UNQ2541 HGNC:33777|Ensembl:ENSG00000177984|HPRD:15614|Vega:OTTHUMG00000020943 9 9q34.3 lipocalin 15 protein-coding LCN15 lipocalin 15 O MSFL2541|lipocalin-15 20121230 -9606 389813 C9orf172 - - HGNC:37284|Ensembl:ENSG00000232434 9 9q34.3 chromosome 9 open reading frame 172 protein-coding C9orf172 chromosome 9 open reading frame 172 O uncharacterized protein C9orf172 20121230 -9606 389816 LRRC26 RP11-350O14.10-001 CAPC|bA350O14.10 HGNC:31409|MIM:613505|Ensembl:ENSG00000184709|HPRD:18397|Vega:OTTHUMG00000020980 9 9q34.3 leucine rich repeat containing 26 protein-coding LRRC26 leucine rich repeat containing 26 O BK channel auxilliary gamma subunit LRRC26|cytokeratin associated protein|cytokeratin-associated protein in cancer|leucine-rich repeat-containing protein 26 20121230 -9606 389827 TMEM8C RP13-388O5.1 TMEM226 HGNC:33778|Ensembl:ENSG00000187616|Vega:OTTHUMG00000131685 9 9q34.2 transmembrane protein 8C protein-coding TMEM8C transmembrane protein 8C O transmembrane protein 226 20121230 -9606 389831 LOC389831 - - - 7 - uncharacterized LOC389831 protein-coding - - - uncharacterized protein LOC389831 20121230 -9606 389834 LOC389834 - - HPRD:18398 4 - ankyrin repeat domain 57 pseudogene pseudo - - - - 20121230 -9606 389840 MAP3K15 RP11-723P2.3 ASK3|bA723P2.3 HGNC:31689|MIM:300820|Ensembl:ENSG00000180815|HPRD:14359|Vega:OTTHUMG00000022724 X Xp22.12 mitogen-activated protein kinase kinase kinase 15 protein-coding MAP3K15 mitogen-activated protein kinase kinase kinase 15 O MAPK/ERK kinase kinase 15|MEK kinase 15|MEKK 15|apoptosis signal-regulating kinase 3 20121230 -9606 389842 LOC389842 - - - X Xp21.3 RAN binding protein 1 pseudogene pseudo - - - - 20121230 -9606 389844 FTH1P19 - FTHL19 HGNC:33525 X Xp21.1 ferritin, heavy polypeptide 1 pseudogene 19 pseudo FTH1P19 ferritin, heavy polypeptide 1 pseudogene 19 O - 20121230 -9606 389849 GAPDHP65 RP11-75A9.2 GAPDHL10|GAPDL10 HGNC:4143 X Xp11.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 65 pseudo GAPDHP65 glyceraldehyde 3 phosphate dehydrogenase pseudogene 65 O - 20121230 -9606 389852 SPACA5 RP11-38O23.2 LYC5|LYZL5|SLLP2|UNQ6288|dJ54B20.3 HGNC:31353|MIM:300593|Ensembl:ENSG00000171489|HPRD:10159|Vega:OTTHUMG00000021459 X Xp11.23 sperm acrosome associated 5 protein-coding SPACA5 sperm acrosome associated 5 O PNPK6288|SLLP-X|Sperm Lysozyme-Like Protein 2|lysozyme-like protein 5|sperm acrosome-associated protein 5|sperm-specific lysozyme-like protein X 20121230 -9606 389856 USP27X - USP22L|USP27 HGNC:13486 X Xp11.23 ubiquitin specific peptidase 27, X-linked protein-coding USP27X ubiquitin specific peptidase 27, X-linked O X-linked ubiquitin carboxyl-terminal hydrolase 27|deubiquitinating enzyme 27|ubiquitin carboxyl-terminal hydrolase 27|ubiquitin specific protease 27, X chromosome|ubiquitin thioesterase 27|ubiquitin thiolesterase 27|ubiquitin-specific-processing protease 27 20121230 -9606 389857 CENPVP1 - CENPVL1|PRR6L1 HGNC:31851 X Xp11.22 centromere protein V pseudogene 1 pseudo CENPVP1 centromere protein V pseudogene 1 O - 20121230 -9606 389860 PAGE2B RP11-266I3.3 CT16.5|GAGEE3|PAGE-2B HGNC:31805|Ensembl:ENSG00000238269|HPRD:18616|Vega:OTTHUMG00000021645 X Xp11.21 P antigen family, member 2B protein-coding PAGE2B P antigen family, member 2B O G antigen, family E, 3|prostate-associated gene 2B protein|putative G antigen family E member 3 20121230 -9606 389866 SERBP1P1 - SERBP1P HGNC:32247 X Xq13.1 SERPINE1 mRNA binding protein 1 pseudogene 1 pseudo SERBP1P1 SERPINE1 mRNA binding protein 1 pseudogene 1 O - 20121230 -9606 389873 SEPHS1P4 - - HGNC:42169 X Xq13.2 selenophosphate synthetase 1 pseudogene 4 pseudo SEPHS1P4 selenophosphate synthetase 1 pseudogene 4 O - 20121230 -9606 389874 ZCCHC13 - CNBP2|ZNF9L HGNC:31749|Ensembl:ENSG00000187969|HPRD:10050|Vega:OTTHUMG00000021851 X Xq13.2 zinc finger, CCHC domain containing 13 protein-coding ZCCHC13 zinc finger, CCHC domain containing 13 O zinc finger CCHC domain-containing protein 13 20121230 -9606 389884 PA2G4P1 - PA2G4P HGNC:8551 X Xq24 proliferation-associated 2G4 pseudogene 1 pseudo PA2G4P1 proliferation-associated 2G4 pseudogene 1 O - 20121230 -9606 389895 LOC389895 - - - X Xq27.1 chromosome 16 open reading frame 72-like protein-coding - - - uncharacterized protein LOC389895 20121230 -9606 389898 UBE2NL RP3-526F5.1 Li174 HGNC:31710|Ensembl:ENSG00000102069|HPRD:18504|Vega:OTTHUMG00000022586 X Xq27.3 ubiquitin-conjugating enzyme E2N-like protein-coding UBE2NL ubiquitin-conjugating enzyme E2N-like O epididymis tissue protein Li 174|putative ubiquitin-conjugating enzyme E2 N-like 20121230 -9606 389901 LOC389901 - - - X Xq28 X-ray repair cross-complementing protein 6-like pseudo - - - - 20121209 -9606 389903 CSAG3 hCG_1740678 CSAG3A|CT24.2 HGNC:26237|HPRD:14214 X Xq28 CSAG family, member 3 protein-coding CSAG3 CSAG family, member 3 O CSAG family, member 3A|cancer/testis antigen 24.2|chondrosarcoma-associated gene 2/3 protein|taxol-resistant-associated gene 3 protein 20121230 -9606 389906 LOC389906 - - - X Xp22.33 zinc finger protein 839 pseudogene pseudo - - - - 20121230 -9606 389908 LOC389908 - - - X Xp22.33 uncharacterized LOC389908 protein-coding - - - - 20111025 -9606 389932 AKR1C6P - TAKR HGNC:44680 10 10p15.1 aldo-keto reductase family 1, member C6, pseudogene pseudo AKR1C6P aldo-keto reductase family 1, member C6, pseudogene O - 20121230 -9606 389935 PRPF38AP1 - - HGNC:44692 10 10p14 PRP38 domain containing A pseudogene 1 pseudo PRPF38AP1 PRP38 domain containing A pseudogene 1 O - 20121230 -9606 389941 C1QL3 - C1QTNF13|C1ql|CTRP13|K100 HGNC:19359|Ensembl:ENSG00000165985|HPRD:16632|Vega:OTTHUMG00000017738 10 10p13 complement component 1, q subcomponent-like 3 protein-coding C1QL3 complement component 1, q subcomponent-like 3 O complement C1q-like protein 3 20121230 -9606 389948 MKNK2P1 - - HGNC:44970 10 10p11.21 MAP kinase interacting serine/threonine kinase 2 pseudogene 1 pseudo MKNK2P1 MAP kinase interacting serine/threonine kinase 2 pseudogene 1 O - 20121230 -9606 389963 SLC9A3P4 RP11-98I6.2 - HGNC:33493 10 10q11.22 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 4 pseudo SLC9A3P4 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 4 O - 20121230 -9606 389970 GAPDHP21 - - HGNC:37773 10 10q21.1 glyceraldehyde 3 phosphate dehydrogenase pseudogene 21 pseudo GAPDHP21 glyceraldehyde 3 phosphate dehydrogenase pseudogene 21 O - 20121230 -9606 389976 LOC389976 - - - 10 10q22.1 actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 389990 LOC389990 - - - 10 10q23.1 replication protein A2, 32kDa pseudogene pseudo - - - - 20121230 -9606 389992 RPL7P34 - RPL7_14_1078 HGNC:36181 10 10q23.31 ribosomal protein L7 pseudogene 34 pseudo RPL7P34 ribosomal protein L7 pseudogene 34 O - 20121230 -9606 389997 LOC389997 - - - 10 10q23.33 nuclear import 7 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 390003 GUCY2GP RP11-324O2.1 GUCY2G HGNC:31863 10 10q25.2 guanylate cyclase 2G, pseudogene pseudo GUCY2GP guanylate cyclase 2G, pseudogene O - 20121230 -9606 390006 PPIAP19 RP11-108K1.2 bA108K1.2 HGNC:31663 10 10q25.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene 19 pseudo PPIAP19 peptidylprolyl isomerase A (cyclophilin A) pseudogene 19 O - 20121230 -9606 390007 TOMM22P5 - - HGNC:38741 10 10q26.11 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 5 pseudo TOMM22P5 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 5 O - 20121230 -9606 390010 NKX1-2 - C10orf121|NKX-1.1|bB238F13.2 HGNC:31652|Ensembl:ENSG00000229544|Vega:OTTHUMG00000019211 10 10q26.13 NK1 homeobox 2 protein-coding NKX1-2 NK1 homeobox 2 O NK1 transcription factor related, locus 2|NK1 transcription factor-related protein 2|homeobox protein SAX-1 20121230 -9606 390012 OR6L1P - - HGNC:15124 10 10q26.3 olfactory receptor, family 6, subfamily L, member 1 pseudogene pseudo OR6L1P olfactory receptor, family 6, subfamily L, member 1 pseudogene O - 20121230 -9606 390028 OR4F2P - HS191N21|OR4F2|S191N21|hs6M1-11 HGNC:8299 11 11p15.5 olfactory receptor, family 4, subfamily F, member 2 pseudogene pseudo OR4F2P olfactory receptor, family 4, subfamily F, member 2 pseudogene O - 20121230 -9606 390029 LOC390029 - - - 11 11p15.5 actin, beta pseudogene pseudo - - - - 20121230 -9606 390030 OR55B1P - OR55B2P|OR55C1P HGNC:15241 11 11p15.4 olfactory receptor, family 55, subfamily B, member 1 pseudogene pseudo OR55B1P olfactory receptor, family 55, subfamily B, member 1 pseudogene O - 20121230 -9606 390031 SSU72P2 - - HGNC:43621 11 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 2 pseudo SSU72P2 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 390033 SSU72P7 - - HGNC:43626 11 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 7 pseudo SSU72P7 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 7 O - 20121230 -9606 390034 OR51R1P - - HGNC:15203 11 11p15.4 olfactory receptor, family 51, subfamily R, member 1 pseudogene pseudo OR51R1P olfactory receptor, family 51, subfamily R, member 1 pseudogene O - 20121230 -9606 390035 OR52K3P - - HGNC:15224 11 11p15.4 olfactory receptor, family 52, subfamily K, member 3 pseudogene pseudo OR52K3P olfactory receptor, family 52, subfamily K, member 3 pseudogene O - 20121230 -9606 390036 OR52K1 - OR11-8 HGNC:15222|Ensembl:ENSG00000196778|HPRD:15018|Vega:OTTHUMG00000165705 11 11p15.4 olfactory receptor, family 52, subfamily K, member 1 protein-coding OR52K1 olfactory receptor, family 52, subfamily K, member 1 O olfactory receptor 52K1|olfactory receptor OR11-8 20121230 -9606 390037 OR52I1 - OR11-13 HGNC:15220|Ensembl:ENSG00000232268|HPRD:15015|Vega:OTTHUMG00000165722 11 11p15.4 olfactory receptor, family 52, subfamily I, member 1 protein-coding OR52I1 olfactory receptor, family 52, subfamily I, member 1 O olfactory receptor 52I1|olfactory receptor OR11-13 20121230 -9606 390038 OR51D1 - OR11-14|OR51D1Q HGNC:15193|Ensembl:ENSG00000197428|HPRD:14995|Vega:OTTHUMG00000165724 11 11p15.4 olfactory receptor, family 51, subfamily D, member 1 protein-coding OR51D1 olfactory receptor, family 51, subfamily D, member 1 O olfactory receptor 51D1|olfactory receptor OR11-14 20121230 -9606 390039 OR51A9P - - HGNC:15190 11 11p15.4 olfactory receptor, family 51, subfamily A, member 9 pseudogene pseudo OR51A9P olfactory receptor, family 51, subfamily A, member 9 pseudogene O - 20121230 -9606 390040 OR51F5P - - HGNC:31283 11 11p15.4 olfactory receptor, family 51, subfamily F, member 5 pseudogene pseudo OR51F5P olfactory receptor, family 51, subfamily F, member 5 pseudogene O - 20121230 -9606 390041 OR51C4P - - HGNC:31280 11 11p15.4 olfactory receptor, family 51, subfamily C, member 4 pseudogene pseudo OR51C4P olfactory receptor, family 51, subfamily C, member 4 pseudogene O - 20121230 -9606 390043 OR51F3P - - HGNC:31281 11 11p15.4 olfactory receptor, family 51, subfamily F, member 3 pseudogene pseudo OR51F3P olfactory receptor, family 51, subfamily F, member 3 pseudogene O - 20121230 -9606 390044 OR51F4P - - HGNC:31282 11 11p15.4 olfactory receptor, family 51, subfamily F, member 4 pseudogene pseudo OR51F4P olfactory receptor, family 51, subfamily F, member 4 pseudogene O - 20121230 -9606 390046 OR51A6P - - HGNC:15187 11 11p15.4 olfactory receptor, family 51, subfamily A, member 6 pseudogene pseudo OR51A6P olfactory receptor, family 51, subfamily A, member 6 pseudogene O - 20121230 -9606 390053 OR52A4 - - HGNC:19579|HPRD:15004 11 11p15.4 olfactory receptor, family 52, subfamily A, member 4 pseudo OR52A4 olfactory receptor, family 52, subfamily A, member 4 O - 20121230 -9606 390054 OR52A5 - OR11-33 HGNC:19580|Ensembl:ENSG00000171944|HPRD:15005|Vega:OTTHUMG00000066616 11 11p15.4 olfactory receptor, family 52, subfamily A, member 5 protein-coding OR52A5 olfactory receptor, family 52, subfamily A, member 5 O odorant receptor HOR3'beta5|olfactory receptor 52A5|olfactory receptor OR11-33 20121230 -9606 390058 OR51B6 - HOR5'Beta6 HGNC:19600|Ensembl:ENSG00000176239|HPRD:14994|Vega:OTTHUMG00000066669 11 11p15.4 olfactory receptor, family 51, subfamily B, member 6 protein-coding OR51B6 olfactory receptor, family 51, subfamily B, member 6 O odorant receptor HOR5'beta6|olfactory receptor 51B5|olfactory receptor 51B6 20121230 -9606 390059 OR51M1 - HOR5'Beta7|OR11-40 HGNC:14847|Ensembl:ENSG00000184698|HPRD:15002|Vega:OTTHUMG00000066680 11 11p15.4 olfactory receptor, family 51, subfamily M, member 1 protein-coding OR51M1 olfactory receptor, family 51, subfamily M, member 1 O odorant receptor HOR5'beta7|olfactory receptor 51M1|olfactory receptor OR11-40 20121230 -9606 390061 OR51Q1 - - HGNC:14851|Ensembl:ENSG00000167360|HPRD:15003|Vega:OTTHUMG00000066896 11 11p15.4 olfactory receptor, family 51, subfamily Q, member 1 protein-coding OR51Q1 olfactory receptor, family 51, subfamily Q, member 1 O olfactory receptor 51Q1 20121230 -9606 390063 OR51I1 - - HGNC:15200|Ensembl:ENSG00000167359|HPRD:14999|Vega:OTTHUMG00000066908 11 11p15.4 olfactory receptor, family 51, subfamily I, member 1 protein-coding OR51I1 olfactory receptor, family 51, subfamily I, member 1 O HOR5'Beta11|odorant receptor HOR5'beta11|olfactory receptor 51I1|olfactory receptor OR11-39 20121230 -9606 390064 OR51I2 - OR11-38 HGNC:15201|Ensembl:ENSG00000187918|HPRD:15000|Vega:OTTHUMG00000066902 11 11p15.4 olfactory receptor, family 51, subfamily I, member 2 protein-coding OR51I2 olfactory receptor, family 51, subfamily I, member 2 O HOR5'Beta12|odorant receptor HOR5'beta12|olfactory receptor 51I2|olfactory receptor OR11-38 20121230 -9606 390066 OR52D1 - OR11-43 HGNC:15212|Ensembl:ENSG00000181609|HPRD:15008|Vega:OTTHUMG00000066895 11 11p15.4 olfactory receptor, family 52, subfamily D, member 1 protein-coding OR52D1 olfactory receptor, family 52, subfamily D, member 1 O HOR 5'Beta14|odorant receptor HOR5'beta14|olfactory receptor 52D1|olfactory receptor OR11-43 20121230 -9606 390067 OR52H1 - OR11-41|OR11-45 HGNC:15218|Ensembl:ENSG00000181616|HPRD:15014|Vega:OTTHUMG00000066909 11 11p15.4 olfactory receptor, family 52, subfamily H, member 1 protein-coding OR52H1 olfactory receptor, family 52, subfamily H, member 1 O olfactory receptor 52H1|olfactory receptor OR11-41 pseudogene|olfactory receptor OR11-45 20121230 -9606 390072 OR52N4 - OR11-64 HGNC:15230|Ensembl:ENSG00000181074|HPRD:15022|Vega:OTTHUMG00000066887 11 11p15.4 olfactory receptor, family 52, subfamily N, member 4 protein-coding OR52N4 olfactory receptor, family 52, subfamily N, member 4 O olfactory receptor 52N4|olfactory receptor OR11-64 20121230 -9606 390073 OR56B2P - OR11-63|OR56B2 HGNC:15246 11 11p15.4 olfactory receptor, family 56, subfamily B, member 2 pseudogene pseudo OR56B2P olfactory receptor, family 56, subfamily B, member 2 pseudogene O - 20121230 -9606 390075 OR52N5 - OR11-62|OR52N5Q HGNC:15231|Ensembl:ENSG00000181009|HPRD:15023|Vega:OTTHUMG00000168799 11 11p15.4 olfactory receptor, family 52, subfamily N, member 5 protein-coding OR52N5 olfactory receptor, family 52, subfamily N, member 5 O olfactory receptor 52N5|olfactory receptor OR11-62 20121230 -9606 390077 OR52N2 - OR11-57 HGNC:15228|Ensembl:ENSG00000180988|HPRD:17745|Vega:OTTHUMG00000168801 11 11p15.4 olfactory receptor, family 52, subfamily N, member 2 protein-coding OR52N2 olfactory receptor, family 52, subfamily N, member 2 O olfactory receptor 52N2|olfactory receptor OR11-57 20121230 -9606 390078 OR52E6 - OR11-58 HGNC:15215|Ensembl:ENSG00000205409|HPRD:15012|Vega:OTTHUMG00000168802 11 11p15.4 olfactory receptor, family 52, subfamily E, member 6 protein-coding OR52E6 olfactory receptor, family 52, subfamily E, member 6 O olfactory receptor 52E6|olfactory receptor OR11-58 20121230 -9606 390079 OR52E8 - OR11-54 HGNC:15217|Ensembl:ENSG00000183269|HPRD:15013|Vega:OTTHUMG00000168803 11 11p15.4 olfactory receptor, family 52, subfamily E, member 8 protein-coding OR52E8 olfactory receptor, family 52, subfamily E, member 8 O olfactory receptor 52E8|olfactory receptor OR11-54|olfactory receptor, family 52, subfamily E, member 8 pseudogene 20121230 -9606 390081 OR52E4 - OR11-55 HGNC:15213|Ensembl:ENSG00000180974|HPRD:15010|Vega:OTTHUMG00000168804 11 11p15.4 olfactory receptor, family 52, subfamily E, member 4 protein-coding OR52E4 olfactory receptor, family 52, subfamily E, member 4 O olfactory receptor 52E4|olfactory receptor OR11-55 20121230 -9606 390082 OR52E5 - OR11-56 HGNC:15214|HPRD:15011 11 11p15.4 olfactory receptor, family 52, subfamily E, member 5 pseudo OR52E5 olfactory receptor, family 52, subfamily E, member 5 O - 20121230 -9606 390083 OR56A3 - OR56A2P|OR56A3P|OR56A6 HGNC:14786|Ensembl:ENSG00000184478|HPRD:17747|Vega:OTTHUMG00000165373 11 11p15.4 olfactory receptor, family 56, subfamily A, member 3 protein-coding OR56A3 olfactory receptor, family 56, subfamily A, member 3 O olfactory receptor 56A3|olfactory receptor 56A6|olfactory receptor OR11-51|olfactory receptor, family 56, subfamily A, member 2 pseudogene|olfactory receptor, family 56, subfamily A, member 3 pseudogene|olfactory receptor, family 56, subfamily A, member 6 20121230 -9606 390084 OR56A5 - OR56A5P HGNC:14792 11 11p15.4 olfactory receptor, family 56, subfamily A, member 5 protein-coding OR56A5 olfactory receptor, family 56, subfamily A, member 5 O olfactory receptor 56A5|olfactory receptor, family 56, subfamily A, member 5 pseudogene 20121230 -9606 390091 OR10AB1P - - HGNC:14804 11 11p15.4 olfactory receptor, family 10, subfamily AB, member 1 pseudogene pseudo OR10AB1P olfactory receptor, family 10, subfamily AB, member 1 pseudogene O - 20121230 -9606 390093 OR10A6 - OR11-96 HGNC:15132|Ensembl:ENSG00000175393|HPRD:14882|Vega:OTTHUMG00000165671 11 11p15.4 olfactory receptor, family 10, subfamily A, member 6 protein-coding OR10A6 olfactory receptor, family 10, subfamily A, member 6 O olfactory receptor 10A6|olfactory receptor OR11-96 20121230 -9606 390098 LOC390098 - - - 11 11p15.1 MAS-related GPR, member X1 pseudogene pseudo - - - - 20121230 -9606 390099 LOC390099 - - - 11 11p15.1 MAS-related GPR, member X3 pseudogene pseudo - - - - 20121230 -9606 390101 LOC390101 - - - 11 11p15.1 MAS-related GPR, member X1 pseudogene pseudo - - - - 20121230 -9606 390102 PCNAP4 - - HGNC:43737 11 11p15.1 proliferating cell nuclear antigen pseudogene 4 pseudo PCNAP4 proliferating cell nuclear antigen pseudogene 4 O - 20121230 -9606 390107 RPS24P15 - RPS24_5_1135 HGNC:35665 11 11p13 ribosomal protein S24 pseudogene 15 pseudo RPS24P15 ribosomal protein S24 pseudogene 15 O - 20121230 -9606 390110 ACCSL - - HGNC:34391|Ensembl:ENSG00000205126|Vega:OTTHUMG00000166426 11 11p11.2 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like protein-coding ACCSL 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like O 1-aminocyclopropane-1-carboxylate synthase-like protein 2|ACC synthase-like protein 2 20121230 -9606 390113 OR4X1 - OR11-104 HGNC:14854|Ensembl:ENSG00000176567|HPRD:14989|Vega:OTTHUMG00000165301 11 11p11.2 olfactory receptor, family 4, subfamily X, member 1 protein-coding OR4X1 olfactory receptor, family 4, subfamily X, member 1 O olfactory receptor 4X1|olfactory receptor OR11-104 20121230 -9606 390116 OR4A40P - - HGNC:31259 11 11p11.2 olfactory receptor, family 4, subfamily A, member 40 pseudogene pseudo OR4A40P olfactory receptor, family 4, subfamily A, member 40 pseudogene O - 20121230 -9606 390117 OR4A43P - - HGNC:31262 11 11p11.2 olfactory receptor, family 4, subfamily A, member 43 pseudogene pseudo OR4A43P olfactory receptor, family 4, subfamily A, member 43 pseudogene O - 20121230 -9606 390131 OR4A6P - - HGNC:15163 11 11p11.12 olfactory receptor, family 4, subfamily A, member 6 pseudogene pseudo OR4A6P olfactory receptor, family 4, subfamily A, member 6 pseudogene O - 20121230 -9606 390133 OR4A2P - - HGNC:15159 11 11p11.12 olfactory receptor, family 4, subfamily A, member 2 pseudogene pseudo OR4A2P olfactory receptor, family 4, subfamily A, member 2 pseudogene O - 20121230 -9606 390134 OR4A4P - OR4A4 HGNC:15161 11 11p11.12 olfactory receptor, family 4, subfamily A, member 4 pseudogene pseudo OR4A4P olfactory receptor, family 4, subfamily A, member 4 pseudogene O - 20121230 -9606 390136 OR4A11P - - HGNC:15148 11 11q11 olfactory receptor, family 4, subfamily A, member 11 pseudogene pseudo OR4A11P olfactory receptor, family 4, subfamily A, member 11 pseudogene O - 20121230 -9606 390137 OR4A9P - - HGNC:15166 11 11q11 olfactory receptor, family 4, subfamily A, member 9 pseudogene pseudo OR4A9P olfactory receptor, family 4, subfamily A, member 9 pseudogene O - 20121230 -9606 390138 OR4A10P - OR4A25P HGNC:15147 11 11q11 olfactory receptor, family 4, subfamily A, member 10 pseudogene pseudo OR4A10P olfactory receptor, family 4, subfamily A, member 10 pseudogene O - 20121230 -9606 390139 OR4A17P - OR4A22P HGNC:15154 11 11q11 olfactory receptor, family 4, subfamily A, member 17 pseudogene pseudo OR4A17P olfactory receptor, family 4, subfamily A, member 17 pseudogene O - 20121230 -9606 390142 OR5D13 - - HGNC:15280|Ensembl:ENSG00000198877|HPRD:15040|Vega:OTTHUMG00000166807 11 11q11 olfactory receptor, family 5, subfamily D, member 13 protein-coding OR5D13 olfactory receptor, family 5, subfamily D, member 13 O olfactory receptor 5D13|olfactory receptor OR11-142|olfactory receptor OR11-148 20121230 -9606 390144 OR5D16 - OR11-154 HGNC:15283|Ensembl:ENSG00000205029|HPRD:17757|Vega:OTTHUMG00000154233 11 11q11 olfactory receptor, family 5, subfamily D, member 16 protein-coding OR5D16 olfactory receptor, family 5, subfamily D, member 16 O olfactory receptor 5D16|olfactory receptor OR11-154 20121230 -9606 390148 OR5W2 - OR5W2P|OR5W3P HGNC:15299|Ensembl:ENSG00000187612|HPRD:15054|Vega:OTTHUMG00000166818 11 11q11 olfactory receptor, family 5, subfamily W, member 2 protein-coding OR5W2 olfactory receptor, family 5, subfamily W, member 2 O olfactory receptor 5W2|olfactory receptor 5W3|olfactory receptor OR11-155|olfactory receptor, family 5, subfamily W, member 3 pseudogene 20121230 -9606 390151 OR8H2 - OR11-171 HGNC:15308|Ensembl:ENSG00000181767|HPRD:15083|Vega:OTTHUMG00000166832 11 11q12.1 olfactory receptor, family 8, subfamily H, member 2 protein-coding OR8H2 olfactory receptor, family 8, subfamily H, member 2 O olfactory receptor 8H2|olfactory receptor OR11-171 20121230 -9606 390152 OR8H3 - OR11-172 HGNC:15309|Ensembl:ENSG00000181761|HPRD:17792|Vega:OTTHUMG00000166833 11 11q12.1 olfactory receptor, family 8, subfamily H, member 3 protein-coding OR8H3 olfactory receptor, family 8, subfamily H, member 3 O olfactory receptor 8H3|olfactory receptor OR11-172 20121230 -9606 390154 OR5T3 - OR11-178|OR5T3Q HGNC:15297|Ensembl:ENSG00000172489|HPRD:15052|Vega:OTTHUMG00000166852 11 11q12.1 olfactory receptor, family 5, subfamily T, member 3 protein-coding OR5T3 olfactory receptor, family 5, subfamily T, member 3 O olfactory receptor 5T3|olfactory receptor OR11-178 20121230 -9606 390155 OR5T1 - OR11-179|OR5T1P HGNC:14821|Ensembl:ENSG00000181698|HPRD:15050|Vega:OTTHUMG00000166853 11 11q12.1 olfactory receptor, family 5, subfamily T, member 1 protein-coding OR5T1 olfactory receptor, family 5, subfamily T, member 1 O olfactory receptor 5T1|olfactory receptor OR11-179|olfactory receptor, family 5, subfamily T, member 1 pseudogene 20121230 -9606 390157 OR8K1 - OR11-182|OR8N1P HGNC:14831|Ensembl:ENSG00000150261|HPRD:15086|Vega:OTTHUMG00000166858 11 11q12.1 olfactory receptor, family 8, subfamily K, member 1 protein-coding OR8K1 olfactory receptor, family 8, subfamily K, member 1 O olfactory receptor 8K1|olfactory receptor OR11-182|olfactory receptor, family 8, subfamily N, member 1 pseudogene 20121230 -9606 390158 RPL5P29 - RPL5_15_1144 HGNC:36335 11 11q12.1 ribosomal protein L5 pseudogene 29 pseudo RPL5P29 ribosomal protein L5 pseudogene 29 O - 20121230 -9606 390162 OR5M9 - OR11-190 HGNC:15294|Ensembl:ENSG00000150269|HPRD:15048|Vega:OTTHUMG00000166874 11 11q12.1 olfactory receptor, family 5, subfamily M, member 9 protein-coding OR5M9 olfactory receptor, family 5, subfamily M, member 9 O olfactory receptor 5M9|olfactory receptor OR11-190 20121230 -9606 390166 OR5M5P - - HGNC:14810 11 11q12.1 olfactory receptor, family 5, subfamily M, member 5 pseudogene pseudo OR5M5P olfactory receptor, family 5, subfamily M, member 5 pseudogene O - 20121230 -9606 390167 OR5M10 - OR11-207 HGNC:15290|Ensembl:ENSG00000254834|HPRD:15047|Vega:OTTHUMG00000166862 11 11q12.1 olfactory receptor, family 5, subfamily M, member 10 protein-coding OR5M10 olfactory receptor, family 5, subfamily M, member 10 O olfactory receptor 5M10|olfactory receptor OR11-207 20121230 -9606 390168 OR5M1 - OR11-208|OST050 HGNC:8352|Ensembl:ENSG00000255012|HPRD:17765|Vega:OTTHUMG00000166863 11 11q12.1 olfactory receptor, family 5, subfamily M, member 1 protein-coding OR5M1 olfactory receptor, family 5, subfamily M, member 1 O olfactory receptor 5M1|olfactory receptor OR11-208|seven transmembrane helix receptor 20121230 -9606 390174 OR9G1 - OR9G5 HGNC:15319|Ensembl:ENSG00000174914|HPRD:15089|Vega:OTTHUMG00000167112 11 11q12.1 olfactory receptor, family 9, subfamily G, member 1 protein-coding OR9G1 olfactory receptor, family 9, subfamily G, member 1 O olfactory receptor 9G1|olfactory receptor 9G5|olfactory receptor OR11-114|olfactory receptor OR11-210|olfactory receptor, family 9, subfamily G, member 5 20121230 -9606 390181 OR5AK2 - - HGNC:15251|Ensembl:ENSG00000181273|HPRD:15031|Vega:OTTHUMG00000167019 11 11q12.1 olfactory receptor, family 5, subfamily AK, member 2 protein-coding OR5AK2 olfactory receptor, family 5, subfamily AK, member 2 O olfactory receptor 5AK2 20121230 -9606 390183 RPS4XP13 - RPS4P13|RPS4X_3_1145 HGNC:36522 11 11q12.1 ribosomal protein S4X pseudogene 13 pseudo RPS4XP13 ribosomal protein S4X pseudogene 13 O - 20121230 -9606 390186 OR5B10P - OR13-34|OR13-64|OR13-67|OR5B10|OR5B11|OR5B11P|OR5B18P|OR5B4P HGNC:8320 11 11q12.1 olfactory receptor, family 5, subfamily B, member 10 pseudogene pseudo OR5B10P olfactory receptor, family 5, subfamily B, member 10 pseudogene O - 20121230 -9606 390190 OR5B2 - OR11-240|OST073 HGNC:8323|Ensembl:ENSG00000172365|HPRD:15037|Vega:OTTHUMG00000167517 11 11q12.1 olfactory receptor, family 5, subfamily B, member 2 protein-coding OR5B2 olfactory receptor, family 5, subfamily B, member 2 O olfactory receptor 5B2|olfactory receptor OR11-240 20121230 -9606 390191 OR5B12 - OR11-241|OR5B12P|OR5B16|OST743 HGNC:15432|Ensembl:ENSG00000172362|HPRD:15035|Vega:OTTHUMG00000167543 11 11q12.1 olfactory receptor, family 5, subfamily B, member 12 protein-coding OR5B12 olfactory receptor, family 5, subfamily B, member 12 O olfactory receptor 5B12|olfactory receptor 5B16|olfactory receptor OR11-241|olfactory receptor, family 5, subfamily B, member 12 pseudogene|olfactory receptor, family 5, subfamily B, member 16 20121230 -9606 390195 OR5AN1 - OR11-244 HGNC:15255|Ensembl:ENSG00000176495|HPRD:15032|Vega:OTTHUMG00000167337 11 11q12.1 olfactory receptor, family 5, subfamily AN, member 1 protein-coding OR5AN1 olfactory receptor, family 5, subfamily AN, member 1 O olfactory receptor 5AN1|olfactory receptor OR11-244 20121230 -9606 390197 OR4D10 - OR11-251|OR4D10P|OST711 HGNC:15173|Ensembl:ENSG00000254466|HPRD:14966|Vega:OTTHUMG00000167341 11 11q12.1 olfactory receptor, family 4, subfamily D, member 10 protein-coding OR4D10 olfactory receptor, family 4, subfamily D, member 10 O olfactory receptor 4D10|olfactory receptor OR11-251|olfactory receptor, family 4, subfamily D, member 10 pseudogene|seven transmembrane helix receptor 20121230 -9606 390199 OR4D9 - OR11-253 HGNC:15178|Ensembl:ENSG00000172742|HPRD:17728|Vega:OTTHUMG00000167343 11 11q12.1 olfactory receptor, family 4, subfamily D, member 9 protein-coding OR4D9 olfactory receptor, family 4, subfamily D, member 9 O olfactory receptor 4D9|olfactory receptor OR11-253|olfactory receptor, family 4, subfamily D, member 9 pseudogene 20121230 -9606 390201 OR10V1 - OR11-256 HGNC:15136|Ensembl:ENSG00000172289|HPRD:17676|Vega:OTTHUMG00000167406 11 11q12.1 olfactory receptor, family 10, subfamily V, member 1 protein-coding OR10V1 olfactory receptor, family 10, subfamily V, member 1 O olfactory receptor 10V1|olfactory receptor OR11-256 20121230 -9606 390203 LOC390203 - - - 11 11q12.1 steroid 5 alpha-reductase 3 pseudogene pseudo - - - - 20121230 -9606 390205 LRRC10B - - HGNC:37215|Ensembl:ENSG00000204950|Vega:OTTHUMG00000168178 11 11q12.2 leucine rich repeat containing 10B protein-coding LRRC10B leucine rich repeat containing 10B O LRRC10-like protein ENSP00000367315|leucine-rich repeat-containing protein 10B 20121230 -9606 390206 RPS2P37 - RPS2_14_1147 HGNC:36482 11 11q12.3 ribosomal protein S2 pseudogene 37 pseudo RPS2P37 ribosomal protein S2 pseudogene 37 O - 20121230 -9606 390211 KRT8P26 - - HGNC:33378 11 11q13.1 keratin 8 pseudogene 26 pseudo KRT8P26 keratin 8 pseudogene 26 O - 20121230 -9606 390212 GPR152 - PGR5 HGNC:23622|Ensembl:ENSG00000175514|HPRD:13599|Vega:OTTHUMG00000168032 11 11q13.2 G protein-coupled receptor 152 protein-coding GPR152 G protein-coupled receptor 152 O G protein-coupled receptor PGR5|probable G-protein coupled receptor 152 20121230 -9606 390213 DOC2GP - - HGNC:37962 11 11q13.2 double C2-like domains, gamma, pseudogene pseudo DOC2GP double C2-like domains, gamma, pseudogene O - 20121230 -9606 390215 OR7E145P - - HGNC:19618 11 11q13.2 olfactory receptor, family 7, subfamily E, member 145 pseudogene pseudo OR7E145P olfactory receptor, family 7, subfamily E, member 145 pseudogene O - 20121230 -9606 390218 IFITM9P - - HGNC:33972 11 11q13.3 interferon induced transmembrane protein 9 pseudogene pseudo IFITM9P interferon induced transmembrane protein 9 pseudogene O - 20121230 -9606 390221 FOLR1P1 - FOLR1P|KB-1 HGNC:3792 11 11q13.4 folate receptor 1 (adult) pseudogene 1 pseudo FOLR1P1 folate receptor 1 (adult) pseudogene 1 O - 20121230 -9606 390224 OR2AT2P - - HGNC:19619 11 11q13.4 olfactory receptor, family 2, subfamily AT, member 2 pseudogene pseudo OR2AT2P olfactory receptor, family 2, subfamily AT, member 2 pseudogene O - 20121230 -9606 390225 OR2AT1P - - HGNC:15145 11 11q13.4 olfactory receptor, family 2, subfamily AT, member 1 pseudogene pseudo OR2AT1P olfactory receptor, family 2, subfamily AT, member 1 pseudogene O - 20121230 -9606 390226 GUCY2EP - GC-E|GCD|GUCY2E HGNC:4690|MIM:601138 11 11q13.5 guanylate cyclase 2E, pseudogene pseudo GUCY2EP guanylate cyclase 2E, pseudogene O - 20121230 -9606 390228 RPL7AP54 - RPL7A_22_1161 HGNC:36264 11 11q14.1 ribosomal protein L7a pseudogene 54 pseudo RPL7AP54 ribosomal protein L7a pseudogene 54 O - 20121230 -9606 390231 TRIM77P - TRIM77 HGNC:34228 11 11q14.3 tripartite motif containing 77, pseudogene protein-coding TRIM77P tripartite motif containing 77, pseudogene O TRIM77-isoform|putative tripartite motif-containing protein 64D|putative tripartite motif-containing protein 77 20121230 -9606 390233 TRIM64FP - - HGNC:43976 2 2q11.1 tripartite motif containing 64F, pseudogene pseudo TRIM64FP tripartite motif containing 64F, pseudogene O - 20121230 -9606 390239 NDUFB11P1 - NDUFB11P HGNC:33980 11 11q14.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, pseudogene 1 pseudo NDUFB11P1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, pseudogene 1 O - 20121230 -9606 390243 FOLR4 - Folbp3 HGNC:32565|Ensembl:ENSG00000183560|Vega:OTTHUMG00000167776 11 11q21 folate receptor 4, delta (putative) protein-coding FOLR4 folate receptor 4, delta (putative) O FR-delta|folate receptor 4 (delta) homolog|probable folate receptor delta 20121230 -9606 390245 KDM4E - JMJD2E|KDM4DL HGNC:37098|Ensembl:ENSG00000235268|Vega:OTTHUMG00000167858 11 11q21 lysine (K)-specific demethylase 4E protein-coding KDM4E lysine (K)-specific demethylase 4E O KDM4D-like protein|lysine-specific demethylase 4E 20121230 -9606 390250 LOC390250 - - - 11 11q22.3 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa pseudogene pseudo - - - - 20121230 -9606 390251 LOC390251 - - - 11 11q23.2 SH3-domain GRB2-like 1 pseudogene pseudo - - - - 20121230 -9606 390255 LOC390255 - - - 11 11q23.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene pseudo - - - - 20121230 -9606 390259 BSX - BSX1 HGNC:20450|MIM:611074|Ensembl:ENSG00000188909|Vega:OTTHUMG00000150247 11 11q24.1 brain-specific homeobox protein-coding BSX brain-specific homeobox O brain specific homeobox|brain-specific homeobox protein homolog 20121230 -9606 390260 OR6X1 - OR11-270 HGNC:14737|Ensembl:ENSG00000221931|HPRD:15070|Vega:OTTHUMG00000166011 11 11q24.1 olfactory receptor, family 6, subfamily X, member 1 protein-coding OR6X1 olfactory receptor, family 6, subfamily X, member 1 O olfactory receptor 6X1|olfactory receptor OR11-270 20121230 -9606 390261 OR6M1 - OR11-271 HGNC:14711|Ensembl:ENSG00000196099|HPRD:15065|Vega:OTTHUMG00000166012 11 11q24.1 olfactory receptor, family 6, subfamily M, member 1 protein-coding OR6M1 olfactory receptor, family 6, subfamily M, member 1 O olfactory receptor 6M1|olfactory receptor OR11-271|olfactory receptor, family 6, subfamily M, member 2 pseudogene 20121230 -9606 390264 OR10G4 - OR11-278 HGNC:14809|Ensembl:ENSG00000254737|HPRD:14889|Vega:OTTHUMG00000165966 11 11q24.1 olfactory receptor, family 10, subfamily G, member 4 protein-coding OR10G4 olfactory receptor, family 10, subfamily G, member 4 O olfactory receptor 10G4|olfactory receptor OR11-278 20121230 -9606 390265 OR10G7 - OR11-283 HGNC:14842|Ensembl:ENSG00000182634|HPRD:14890|Vega:OTTHUMG00000165969 11 11q24.2 olfactory receptor, family 10, subfamily G, member 7 protein-coding OR10G7 olfactory receptor, family 10, subfamily G, member 7 O olfactory receptor 10G7|olfactory receptor OR11-283 20121230 -9606 390266 OR10D4P - OR10D4|OR10D6P HGNC:14770 11 11q24.2 olfactory receptor, family 10, subfamily D, member 4 pseudogene pseudo OR10D4P olfactory receptor, family 10, subfamily D, member 4 pseudogene O - 20121230 -9606 390267 OR10N1P - - HGNC:14689 11 11q24.2 olfactory receptor, family 10, subfamily N, member 1 pseudogene pseudo OR10N1P olfactory receptor, family 10, subfamily N, member 1 pseudogene O - 20121230 -9606 390269 OR8F1P - - HGNC:14691 11 11q24.2 olfactory receptor, family 8, subfamily F, member 1 pseudogene pseudo OR8F1P olfactory receptor, family 8, subfamily F, member 1 pseudogene O - 20121230 -9606 390271 OR8B3 - OR11-311 HGNC:8472|Ensembl:ENSG00000196661|HPRD:15079|Vega:OTTHUMG00000165983 11 11q24.2 olfactory receptor, family 8, subfamily B, member 3 protein-coding OR8B3 olfactory receptor, family 8, subfamily B, member 3 O olfactory receptor 8B3|olfactory receptor OR11-311 20121230 -9606 390273 OR8A2P - - HGNC:15306 11 11q24.2 olfactory receptor, family 8, subfamily A, member 2 pseudogene pseudo OR8A2P olfactory receptor, family 8, subfamily A, member 2 pseudogene O - 20121230 -9606 390274 OR8B10P - - HGNC:14751 11 11q24.2 olfactory receptor, family 8, subfamily B, member 10 pseudogene pseudo OR8B10P olfactory receptor, family 8, subfamily B, member 10 pseudogene O - 20121230 -9606 390275 OR8A1 - OR11-318|OST025 HGNC:8469|Ensembl:ENSG00000196119|HPRD:15077|Vega:OTTHUMG00000165923 11 11q24.2 olfactory receptor, family 8, subfamily A, member 1 protein-coding OR8A1 olfactory receptor, family 8, subfamily A, member 1 O olfactory receptor 8A1|olfactory receptor OR11-318 20121230 -9606 390282 LOC390282 - - - 12 12p13.32 eukaryotic translation initiation factor 3, subunit F pseudogene pseudo - - - - 20121230 -9606 390283 RPL31P10 - RPL31_15_1198 HGNC:33180 12 12p13.31 ribosomal protein L31 pseudogene 10 pseudo RPL31P10 ribosomal protein L31 pseudogene 10 O - 20121230 -9606 390284 SRP14P1 - - HGNC:33181 12 12p13.31 signal recognition particle 14kDa (homologous Alu RNA binding protein) pseudogene 1 pseudo SRP14P1 signal recognition particle 14kDa (homologous Alu RNA binding protein) pseudogene 1 O - 20121230 -9606 390288 OR7E84P - OR7E54P|OST185 HGNC:14690 4 4p16.1 olfactory receptor, family 7, subfamily E, member 84 pseudogene pseudo OR7E84P olfactory receptor, family 7, subfamily E, member 84 pseudogene O - 20121230 -9606 390294 LOC390294 - - - 12 12p13.2 heterogeneous nuclear ribonucleoprotein A/B pseudogene pseudo - - - - 20121230 -9606 390297 PSMC1P8 - - HGNC:39783 12 12p12.3 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 8 pseudo PSMC1P8 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 8 O - 20121230 -9606 390298 LOC390298 - - - 12 12p12.3 translocase of inner mitochondrial membrane 17 homolog B (yeast) pseudogene pseudo - - - - 20121230 -9606 390301 ST13P9 - - HGNC:38744 12 12p11.1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 9 pseudo ST13P9 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 9 O - 20121230 -9606 390306 LOC390306 - - - 12 12q12 ribosomal protein L7a pseudogene pseudo - - - - 20121230 -9606 390308 LOC390308 - - - 12 12q12 CDGSH iron sulfur domain 1 pseudogene pseudo - - - - 20121230 -9606 390311 LOC390311 - - - 12 12q13.11 prohibitin pseudogene pseudo - - - - 20121230 -9606 390313 OR5BS1P - OR5BS1 HGNC:19627 12 12q13.11 olfactory receptor, family 5, subfamily BS, member 1 pseudogene pseudo OR5BS1P olfactory receptor, family 5, subfamily BS, member 1 pseudogene O - 20121230 -9606 390314 LOC390314 - - - 12 12q13.12 chromosome 20 open reading frame 27 pseudogene pseudo - - - - 20121230 -9606 390318 OR10U1P - - HGNC:15332 12 12q13.2 olfactory receptor, family 10, subfamily U, member 1 pseudogene pseudo OR10U1P olfactory receptor, family 10, subfamily U, member 1 pseudogene O - 20121230 -9606 390320 OR6C5P - - HGNC:31292 12 12q13.2 olfactory receptor, family 6, subfamily C, member 5 pseudogene pseudo OR6C5P olfactory receptor, family 6, subfamily C, member 5 pseudogene O - 20121230 -9606 390321 OR6C1 - OST267 HGNC:8355|Ensembl:ENSG00000205330|HPRD:11416|Vega:OTTHUMG00000168102 12 12q13.2 olfactory receptor, family 6, subfamily C, member 1 protein-coding OR6C1 olfactory receptor, family 6, subfamily C, member 1 O olfactory receptor 6C1 20121230 -9606 390322 OR6C7P - - HGNC:31306 12 12q13.2 olfactory receptor, family 6, subfamily C, member 7 pseudogene pseudo OR6C7P olfactory receptor, family 6, subfamily C, member 7 pseudogene O - 20121230 -9606 390323 OR6C75 - - HGNC:31304|Ensembl:ENSG00000187857|HPRD:15061|Vega:OTTHUMG00000169886 12 12q13.2 olfactory receptor, family 6, subfamily C, member 75 protein-coding OR6C75 olfactory receptor, family 6, subfamily C, member 75 O olfactory receptor 6C75 20121230 -9606 390324 OR6C71P - - HGNC:31300 12 12q13.2 olfactory receptor, family 6, subfamily C, member 71 pseudogene pseudo OR6C71P olfactory receptor, family 6, subfamily C, member 71 pseudogene O - 20121230 -9606 390326 OR6C76 - - HGNC:31305|Ensembl:ENSG00000185821|HPRD:15062|Vega:OTTHUMG00000169956 12 12q13.2 olfactory receptor, family 6, subfamily C, member 76 protein-coding OR6C76 olfactory receptor, family 6, subfamily C, member 76 O olfactory receptor 6C76 20121230 -9606 390327 OR6C70 - - HGNC:31299|Ensembl:ENSG00000184954|HPRD:15059|Vega:OTTHUMG00000171127 12 12q13.2 olfactory receptor, family 6, subfamily C, member 70 protein-coding OR6C70 olfactory receptor, family 6, subfamily C, member 70 O olfactory receptor 6C70 20121230 -9606 390329 OR6U2P - OR6U1P HGNC:19631 12 12q13.2 olfactory receptor, family 6, subfamily U, member 2 pseudogene pseudo OR6U2P olfactory receptor, family 6, subfamily U, member 2 pseudogene O - 20121230 -9606 390332 LOC390332 - - - 12 12q13.3 retinol dehydrogenase 16 (all-trans) pseudogene pseudo - - - - 20121230 -9606 390340 PDCL3P7 - - HGNC:44508 12 12q14.3 phosducin-like 3 pseudogene 7 pseudo PDCL3P7 phosducin-like 3 pseudogene 7 O - 20121209 -9606 390345 RPL10P13 - - - 12 12q21.2 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 390352 EEF1A1P33 - - HGNC:37911 12 12q23.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 33 pseudo EEF1A1P33 eukaryotic translation elongation factor 1 alpha 1 pseudogene 33 O - 20121230 -9606 390354 RPL18AP3 - RPL18A_6_1273|bcm182 HGNC:31387 12 12q23.3 ribosomal protein L18a pseudogene 3 pseudo RPL18AP3 ribosomal protein L18a pseudogene 3 O - 20121230 -9606 390358 LOC390358 - - - 12 12q23.3 ret finger protein-like 2 pseudogene pseudo - - - - 20121230 -9606 390363 CLIC1P1 - - HGNC:32691 12 12q24.31 chloride intracellular channel 1 pseudogene 1 pseudo CLIC1P1 chloride intracellular channel 1 pseudogene 1 O - 20121230 -9606 390378 PPIAP28 RP11-264J4.4 - HGNC:39902 13 13q12.11 peptidylprolyl isomerase A (cyclophilin A) pseudogene 28 pseudo PPIAP28 peptidylprolyl isomerase A (cyclophilin A) pseudogene 28 O - 20121230 -9606 390394 EIF4A1P5 RP11-421P11.6 - HGNC:37924 13 13q13.3 eukaryotic translation initiation factor 4A1 pseudogene 5 pseudo EIF4A1P5 eukaryotic translation initiation factor 4A1 pseudogene 5 O - 20121230 -9606 390402 AKR1B1P4 - ALDRL4 HGNC:423 13 13q14.13 aldo-keto reductase family 1, member B1 pseudogene 4 pseudo AKR1B1P4 aldo-keto reductase family 1, member B1 pseudogene 4 O - 20121230 -9606 390403 FAM206BP RP11-247M1.2 - HGNC:39851 13 13q14.13 family with sequence similarity 206, member B, pseudogene pseudo FAM206BP family with sequence similarity 206, member B, pseudogene O - 20121230 -9606 390407 EIF4A1P6 - - HGNC:37925 13 13q21.2 eukaryotic translation initiation factor 4A1 pseudogene 6 pseudo EIF4A1P6 eukaryotic translation initiation factor 4A1 pseudogene 6 O - 20121230 -9606 390411 NPM1P22 RP11-248N6.3 - HGNC:39679 13 13q21.32 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 22 pseudo NPM1P22 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 22 O - 20121230 -9606 390413 RPL7P44 - RPL7_17_1325 HGNC:36143 13 13q22.3 ribosomal protein L7 pseudogene 44 pseudo RPL7P44 ribosomal protein L7 pseudogene 44 O - 20121230 -9606 390415 CCT5P2 - CCT5-P1 HGNC:35139 13 13q31.1 chaperonin containing TCP1, subunit 5 (epsilon) pseudogene 2 pseudo CCT5P2 chaperonin containing TCP1, subunit 5 (epsilon) pseudogene 2 O - 20121230 -9606 390418 KRT18P27 - - HGNC:33396 13 13q31.3 keratin 18 pseudogene 27 pseudo KRT18P27 keratin 18 pseudogene 27 O - 20121230 -9606 390419 PPIAP23 RP11-430K10.1 - HGNC:39268 13 13q31.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene 23 pseudo PPIAP23 peptidylprolyl isomerase A (cyclophilin A) pseudogene 23 O - 20121230 -9606 390421 GAPDHP22 RP11-122A8.1 - HGNC:37774 13 13q32.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 22 pseudo GAPDHP22 glyceraldehyde 3 phosphate dehydrogenase pseudogene 22 O - 20121230 -9606 390423 ARF4P3 - - HGNC:32380 13 13q32.3 ADP-ribosylation factor 4 pseudogene 3 pseudo ARF4P3 ADP-ribosylation factor 4 pseudogene 3 O - 20121230 -9606 390424 ATP5G1P5 - - HGNC:39508 13 13q33.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 5 pseudo ATP5G1P5 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 5 O - 20121230 -9606 390429 OR4N2 - OR14-13|OR14-8 HGNC:14742|Ensembl:ENSG00000176294|HPRD:17730|Vega:OTTHUMG00000170614 14 14q11.2 olfactory receptor, family 4, subfamily N, member 2 protein-coding OR4N2 olfactory receptor, family 4, subfamily N, member 2 O olfactory receptor 4N2|olfactory receptor OR14-13|olfactory receptor OR14-8 20121230 -9606 390431 OR4K2 - OR14-15 HGNC:14728|Ensembl:ENSG00000165762|HPRD:14980|Vega:OTTHUMG00000170624 14 14q11.2 olfactory receptor, family 4, subfamily K, member 2 protein-coding OR4K2 olfactory receptor, family 4, subfamily K, member 2 O olfactory receptor 4K2|olfactory receptor OR14-15 20121230 -9606 390432 OR4Q2 - OR4Q2P HGNC:15359 14 14q11.2 olfactory receptor, family 4, subfamily Q, member 2 (gene/pseudogene) pseudo OR4Q2 olfactory receptor, family 4, subfamily Q, member 2 (gene/pseudogene) O - 20121230 -9606 390433 OR4K13 - OR14-27 HGNC:15351|Ensembl:ENSG00000176253|HPRD:14976|Vega:OTTHUMG00000170781 14 14q11.2 olfactory receptor, family 4, subfamily K, member 13 protein-coding OR4K13 olfactory receptor, family 4, subfamily K, member 13 O olfactory receptor 4K13|olfactory receptor OR14-27 20121230 -9606 390434 OR4U1P - OR14-23 HGNC:15361 14 14q11.2 olfactory receptor, family 4, subfamily U, member 1 pseudogene pseudo OR4U1P olfactory receptor, family 4, subfamily U, member 1 pseudogene O - 20121230 -9606 390435 OR4T1P - - HGNC:15360 14 14q11.2 olfactory receptor, family 4, subfamily T, member 1 pseudogene pseudo OR4T1P olfactory receptor, family 4, subfamily T, member 1 pseudogene O - 20121230 -9606 390436 OR4K17 - OR14-29 HGNC:15355|Ensembl:ENSG00000176230|HPRD:14979|Vega:OTTHUMG00000170783 14 14q11.2 olfactory receptor, family 4, subfamily K, member 17 protein-coding OR4K17 olfactory receptor, family 4, subfamily K, member 17 O olfactory receptor 4K17|olfactory receptor OR14-29 20121230 -9606 390437 OR4N5 - - HGNC:15358|Ensembl:ENSG00000184394|HPRD:14985|Vega:OTTHUMG00000170784 14 14q11.2 olfactory receptor, family 4, subfamily N, member 5 protein-coding OR4N5 olfactory receptor, family 4, subfamily N, member 5 O olfactory receptor 4N5|olfactory receptor OR14-33 20121230 -9606 390438 OR11G1P - - HGNC:15345 14 14q11.2 olfactory receptor, family 11, subfamily G, member 1 pseudogene pseudo OR11G1P olfactory receptor, family 11, subfamily G, member 1 pseudogene O - 20121230 -9606 390439 OR11G2 - OR14-34 HGNC:15346|Ensembl:ENSG00000196832|HPRD:14900|Vega:OTTHUMG00000167700 14 14q11.2 olfactory receptor, family 11, subfamily G, member 2 protein-coding OR11G2 olfactory receptor, family 11, subfamily G, member 2 O olfactory receptor 11G2|olfactory receptor OR14-34 20121230 -9606 390440 OR11H5P - - HGNC:15348 14 14q11.2 olfactory receptor, family 11, subfamily H, member 5 pseudogene pseudo OR11H5P olfactory receptor, family 11, subfamily H, member 5 pseudogene O - 20121230 -9606 390441 OR11H7 - OR11H7P HGNC:15350 14 14q11.2 olfactory receptor, family 11, subfamily H, member 7 (gene/pseudogene) pseudo OR11H7 olfactory receptor, family 11, subfamily H, member 7 (gene/pseudogene) O - 20121230 -9606 390442 OR11H4 - OR14-36 HGNC:15347|Ensembl:ENSG00000176198|HPRD:14902|Vega:OTTHUMG00000170852 14 14q11.2 olfactory receptor, family 11, subfamily H, member 4 protein-coding OR11H4 olfactory receptor, family 11, subfamily H, member 4 O olfactory receptor 11H4|olfactory receptor OR14-36 20121230 -9606 390443 RNASE9 - HEL128|h461 HGNC:20673|MIM:614014|Ensembl:ENSG00000188655|HPRD:17983|Vega:OTTHUMG00000170989 14 14q11.2 ribonuclease, RNase A family, 9 (non-active) protein-coding RNASE9 ribonuclease, RNase A family, 9 (non-active) O inactive ribonuclease-like protein 9|ribonuclear enzyme|ribonuclease 9|ribonuclease-like protein 9 20121230 -9606 390445 OR5AU1 - OR14-38 HGNC:15362|Ensembl:ENSG00000169327|HPRD:15034|Vega:OTTHUMG00000170753 14 14q11.2 olfactory receptor, family 5, subfamily AU, member 1 protein-coding OR5AU1 olfactory receptor, family 5, subfamily AU, member 1 O olfactory receptor 5AU1|olfactory receptor OR14-38 20121230 -9606 390472 KRT8P2 - - HGNC:20282|Vega:OTTHUMG00000135122 14 14q21.2 keratin 8 pseudogene 2 pseudo KRT8P2 keratin 8 pseudogene 2 O - 20121230 -9606 390482 AKR1B1P5 - AKR1B1P HGNC:20002 14 14q23.1 aldo-keto reductase family 1, member B1 pseudogene 5 pseudo AKR1B1P5 aldo-keto reductase family 1, member B1 pseudogene 5 O - 20121230 -9606 390483 SALL4P7 - - HGNC:43900 14 14q23.1 sal-like 4 (Drosophila) pseudogene 7 pseudo SALL4P7 sal-like 4 (Drosophila) pseudogene 7 O - 20121230 -9606 390501 MPPE1P - - HGNC:20143 14 14q31.3 metallophosphoesterase 1 pseudogene pseudo MPPE1P metallophosphoesterase 1 pseudogene O - 20121230 -9606 390502 SERPINA2P - ARGS|ATR|PIL|SERPINA2|psiATR HGNC:8985|MIM:107410 14 14q32.13 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2, pseudogene pseudo SERPINA2P serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2, pseudogene O - 20121230 -9606 390503 ADIPOR1P2 - - HGNC:44911 14 14q32.13 adiponectin receptor 1 pseudogene 2 pseudo ADIPOR1P2 adiponectin receptor 1 pseudogene 2 O - 20121230 -9606 390530 IGHV1OR21-1 - - HGNC:38040|IMGT/GENE-DB:IGHV1OR21-1|Vega:OTTHUMG00000074130 21 21p11.2 immunoglobulin heavy variable 1/OR21-1 (non-functional) pseudo IGHV1OR21-1 immunoglobulin heavy variable 1/OR21-1 (non-functional) O - 20121230 -9606 390531 IGHV1OR15-9 - IGHV1OR159|VSIG7 HGNC:5569|IMGT/GENE-DB:IGHV1/OR15-9 15 15q11.1 immunoglobulin heavy variable 1/OR15-9 (non-functional) pseudo IGHV1OR15-9 immunoglobulin heavy variable 1/OR15-9 (non-functional) O - 20121230 -9606 390535 GOLGA8EP - GOLGA8E HGNC:32377|HPRD:17381 15 15q11.2 golgin A8 family, member E, pseudogene pseudo GOLGA8EP golgin A8 family, member E, pseudogene O - 20121230 -9606 390538 OR4M2 - OR15-3 HGNC:15373|Ensembl:ENSG00000182974|HPRD:14984|Vega:OTTHUMG00000171738 15 15q11.2 olfactory receptor, family 4, subfamily M, member 2 protein-coding OR4M2 olfactory receptor, family 4, subfamily M, member 2 O olfactory receptor 4M2|olfactory receptor OR15-3 20121230 -9606 390539 OR4N3P - OR15-2 HGNC:15374 15 15q11.2 olfactory receptor, family 4, subfamily N, member 3 pseudogene pseudo OR4N3P olfactory receptor, family 4, subfamily N, member 3 pseudogene O - 20121230 -9606 390560 DNM1DN4-1 - DNM1DN4.1 - 15 15q13.3 DNM1DN4.1 duplicon other - - - - 20100404 -9606 390561 HERC2P10 - - HGNC:39056 15 15q13.2 hect domain and RLD 2 pseudogene 10 pseudo HERC2P10 hect domain and RLD 2 pseudogene 10 O - 20121230 -9606 390572 PRELID1P4 - - HGNC:43889 15 15q14 PRELI domain containing 1 pseudogene 4 pseudo PRELID1P4 PRELI domain containing 1 pseudogene 4 O - 20121230 -9606 390576 RPS15P8 - RPS15_4_1425 HGNC:35847 15 15q14 ribosomal protein S15 pseudogene 8 pseudo RPS15P8 ribosomal protein S15 pseudogene 8 O - 20121230 -9606 390578 RPLP0P10 - RPLP0_5_1426 HGNC:35991 15 15q15.1 ribosomal protein, large, P0 pseudogene 10 pseudo RPLP0P10 ribosomal protein, large, P0 pseudogene 10 O - 20121230 -9606 390581 ATP5HP1 - HsT18164 HGNC:31021 15 15q15.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1 pseudo ATP5HP1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1 O - 20121230 -9606 390586 LOC390586 - - - 15 15q21.3 hydroxyacyl-CoA dehydrogenase pseudogene pseudo - - - - 20121230 -9606 390594 KBTBD13 hCG_1645727 HCG1645727|NEM6 HGNC:37227|MIM:613727|Ensembl:ENSG00000234438|Vega:OTTHUMG00000172424 15 15q22.31 kelch repeat and BTB (POZ) domain containing 13 protein-coding KBTBD13 kelch repeat and BTB (POZ) domain containing 13 O kelch repeat and BTB domain-containing protein 13|nemaline myopathy type 6 20121230 -9606 390595 UBAP1L - UBAP-1L HGNC:40028|Ensembl:ENSG00000246922|Vega:OTTHUMG00000172425 15 15q22.31 ubiquitin associated protein 1-like protein-coding UBAP1L ubiquitin associated protein 1-like O ubiquitin-associated protein 1-like 20121230 -9606 390597 LETM1P1 - - HGNC:14649 15 15q22.31 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 1 pseudo LETM1P1 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 1 O - 20121230 -9606 390598 SKOR1 - CORL1|FUSSEL15|LBXCOR1 HGNC:21326|MIM:611273|Ensembl:ENSG00000188779|Vega:OTTHUMG00000170878 15 15q23 SKI family transcriptional corepressor 1 protein-coding SKOR1 SKI family transcriptional corepressor 1 O LBX1 corepressor 1|Lbxcor1 homolog|corepressor for LBX1|functional Smad-suppressing element on chromosome 15|functional smad suppressing element 15|fussel-15|ladybird homeobox corepressor 1|transcriptional corepressor CORL1 20121230 -9606 390600 LOC390600 - - - 15 15q23 cytokine induced apoptosis inhibitor 1 pseudogene pseudo - - - - 20121230 -9606 390601 KRT8P9 - - HGNC:33363 15 15q23 keratin 8 pseudogene 9 pseudo KRT8P9 keratin 8 pseudogene 9 O - 20121230 -9606 390610 KRT8P23 - - HGNC:33375 15 15q24.3 keratin 8 pseudogene 23 pseudo KRT8P23 keratin 8 pseudogene 23 O - 20121230 -9606 390612 RPL18P11 - RPL18_4_1455 HGNC:35742 15 15q25.1 ribosomal protein L18 pseudogene 11 pseudo RPL18P11 ribosomal protein L18 pseudogene 11 O - 20121230 -9606 390614 LOC390614 - - - 15 15q25.1 relaxin/insulin-like family peptide receptor 3 pseudogene pseudo - - - - 20121230 -9606 390616 ANKRD34C - - HGNC:33888|Ensembl:ENSG00000235711 15 15q25.1 ankyrin repeat domain 34C protein-coding ANKRD34C ankyrin repeat domain 34C O ankyrin repeat domain-containing protein 34C 20121230 -9606 390617 LOC390617 - - - 15 15q25.1 transcription factor Dp-1 pseudogene pseudo - - - - 20121230 -9606 390618 LOC390618 - - - 15 15q25.1 ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 390627 LOC390627 - - - 15 15q25.2 chondroitin sulfate proteoglycan 4 pseudogene pseudo - - - - 20121230 -9606 390634 KRT18P47 - - HGNC:33417 15 15q26.1 keratin 18 pseudogene 47 pseudo KRT18P47 keratin 18 pseudogene 47 O - 20121230 -9606 390637 GDPGP1 - C15orf58|VTC2 HGNC:34360|Ensembl:ENSG00000183208|HPRD:18400|Vega:OTTHUMG00000172128 15 15q26.1 GDP-D-glucose phosphorylase 1 protein-coding GDPGP1 GDP-D-glucose phosphorylase 1 O GDP-D-glucose phosphorylase C15orf58 20121230 -9606 390638 LOC390638 - - - 15 15q26.1 golgin A2 pseudogene pseudo - - - - 20121230 -9606 390643 PGAM1P12 - - HGNC:42459 15 15q26.2 phosphoglycerate mutase 1 pseudogene 12 pseudo PGAM1P12 phosphoglycerate mutase 1 pseudogene 12 O - 20121230 -9606 390648 OR4F6 - OR15-15|OR4F12 HGNC:15372|Ensembl:ENSG00000184140|HPRD:11415|Vega:OTTHUMG00000172267 15 15q26.3 olfactory receptor, family 4, subfamily F, member 6 protein-coding OR4F6 olfactory receptor, family 4, subfamily F, member 6 O olfactory receptor 4F12|olfactory receptor 4F6|olfactory receptor OR15-15|olfactory receptor, family 4, subfamily F, member 12 20121230 -9606 390649 OR4F15 - - HGNC:15078|Ensembl:ENSG00000182854|HPRD:14968|Vega:OTTHUMG00000172268 15 15q26.3 olfactory receptor, family 4, subfamily F, member 15 protein-coding OR4F15 olfactory receptor, family 4, subfamily F, member 15 O olfactory receptor 4F15|olfactory receptor OR15-14 20121230 -9606 390650 OR4F14P - OR4F14 HGNC:15077 15 15q26.3 olfactory receptor, family 4, subfamily F, member 14 pseudogene pseudo OR4F14P olfactory receptor, family 4, subfamily F, member 14 pseudogene O - 20121230 -9606 390651 OR4F13P - GPCRLTM7 HGNC:15076 15 15q26.3 olfactory receptor, family 4, subfamily F, member 13 pseudogene pseudo OR4F13P olfactory receptor, family 4, subfamily F, member 13 pseudogene O - 20121230 -9606 390652 OR4F28P - - HGNC:31229 15 15q26.3 olfactory receptor, family 4, subfamily F, member 28 pseudogene pseudo OR4F28P olfactory receptor, family 4, subfamily F, member 28 pseudogene O - 20121230 -9606 390660 LOC390660 - - - 15 - FLJ00317 protein pseudo - - - - 20121230 -9606 390664 C1QTNF8 UNQ5829/PRO19648 CTRP8|UNQ5829 HGNC:31374|MIM:614147|Ensembl:ENSG00000184471|HPRD:12719|Vega:OTTHUMG00000167756 16 16p13.3 C1q and tumor necrosis factor related protein 8 protein-coding C1QTNF8 C1q and tumor necrosis factor related protein 8 O C1q/TNF-related protein 8|complement C1q tumor necrosis factor-related protein 8 20121230 -9606 390667 PTX4 - C16orf38 HGNC:14171|MIM:613442|Ensembl:ENSG00000251692|HPRD:18401 16 16p13.3 pentraxin 4, long protein-coding PTX4 pentraxin 4, long O neuronal pentraxin-like protein C16orf38|pentraxin-4 20121230 -9606 390671 RPL18P12 - RPL18_8_1468 HGNC:36115 16 16p13.3 ribosomal protein L18 pseudogene 12 pseudo RPL18P12 ribosomal protein L18 pseudogene 12 O - 20121230 -9606 390688 CDC37P1 - A-761H5.2 HGNC:34406 16 16p11.2 cell division cycle 37 homolog (S. cerevisiae) pseudogene 1 pseudo CDC37P1 cell division cycle 37 homolog (S. cerevisiae) pseudogene 1 O - 20121209 -9606 390705 LOC390705 - - - 16 16p11.2 protein phosphatase 2, regulatory subunit B'', beta pseudogene pseudo - - - - 20121230 -9606 390714 LOC390714 - - - 16 16p11.2 immunoglobulin heavy chain variable region other - - - - 20121230 -9606 390729 RPL10P14 - - HGNC:43897 16 16q12.1 ribosomal protein L10 pseudogene 14 pseudo RPL10P14 ribosomal protein L10 pseudogene 14 O - 20121230 -9606 390730 LOC390730 - - - 16 16q12.2 prohibitin pseudogene pseudo - - - - 20121230 -9606 390732 CES1P2 - - - 16 16q12.2 carboxylesterase 1 pseudogene pseudo - - - - 20121230 -9606 390735 RPS15AP34 hCG_1642987 RPS15A_22_1489 HGNC:35609 16 16q21 ribosomal protein S15a pseudogene 34 pseudo RPS15AP34 ribosomal protein S15a pseudogene 34 O - 20121230 -9606 390739 LOC390739 - - - 16 16q22.2 c-myc binding protein pseudogene pseudo - - - - 20121230 -9606 390748 PABPN1L - PABPNL1|ePABP2 HGNC:37237|Ensembl:ENSG00000205022|Vega:OTTHUMG00000170127 16 16q24.3 poly(A) binding protein, nuclear 1-like (cytoplasmic) protein-coding PABPN1L poly(A) binding protein, nuclear 1-like (cytoplasmic) O ePABP-2|embryonic poly(A) binding protein 2|embryonic poly(A)-binding protein 2|embryonic poly(A)-binding protein type II|embryonic polyadenylate-binding protein 2|poly(A)-binding protein nuclear-like 1 20121230 -9606 390756 OR3A4P - OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P HGNC:15510|HPRD:14957 17 17p13.3 olfactory receptor, family 3, subfamily A, member 4 pseudogene pseudo OR3A4P olfactory receptor, family 3, subfamily A, member 4 pseudogene O - 20121230 -9606 390760 LOC390760 - - - 17 17p13.1 protein phosphatase inhibitor 2-like protein-coding - - - - 20120511 -9606 390766 RNASEH1P2 - - HGNC:18715 17 17p11.2 ribonuclease H1 pseudogene 2 pseudo RNASEH1P2 ribonuclease H1 pseudogene 2 O - 20121230 -9606 390788 CCL3P1 - CCL3L2|G0S19-3|LD78gamma|SCYA3L2 HGNC:10629|MIM:609467 17 17q12 chemokine (C-C motif) ligand 3 pseudogene 1 pseudo CCL3P1 chemokine (C-C motif) ligand 3 pseudogene 1 O - 20121209 -9606 390790 ARL5C - ARL12 HGNC:31111|Ensembl:ENSG00000141748|Vega:OTTHUMG00000179048 17 17q12 ADP-ribosylation factor-like 5C protein-coding ARL5C ADP-ribosylation factor-like 5C O ADP-ribosylation factor-like 12|ADP-ribosylation factor-like protein 12|putative ADP-ribosylation factor-like protein 5C 20121230 -9606 390791 LOC390791 - - - 17 17q21.2 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 390792 KRT39 - CK-39|K39|KA35 HGNC:32971|Ensembl:ENSG00000196859|HPRD:13750|Vega:OTTHUMG00000133424 17 17q21.2 keratin 39 protein-coding KRT39 keratin 39 O cytokeratin-39|keratin, type I cytoskeletal 39|keratin-39|type I hair keratin KA35 20121230 -9606 390800 RPL7L1P5 - - HGNC:39487 17 17q21.31 ribosomal protein L7-like 1 pseudogene 5 pseudo RPL7L1P5 ribosomal protein L7-like 1 pseudogene 5 O - 20121230 -9606 390806 LOC390806 - - - 17 17q23.3 family with sequence similarity 136, member A pseudogene pseudo - - - - 20121230 -9606 390811 POLR3KP2 - - HGNC:39578 17 17q25.1 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 2 pseudo POLR3KP2 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 2 O - 20121230 -9606 390816 THA1P - GLY1 HGNC:18004 17 17q25.3 threonine aldolase 1, pseudogene pseudo THA1P threonine aldolase 1, pseudogene O - 20121230 -9606 390831 PMM2P1 - - HGNC:9116 18 18p11.22 phosphomannomutase 2 pseudogene 1 pseudo PMM2P1 phosphomannomutase 2 pseudogene 1 O - 20121230 -9606 390834 FEM1AP2 - - HGNC:39830 18 18p11.21 fem-1 homolog a (C. elegans) pseudogene 2 pseudo FEM1AP2 fem-1 homolog a (C. elegans) pseudogene 2 O - 20121230 -9606 390836 OR4K8P - OR18-1|OR4K9P HGNC:14787 18 18p11.21 olfactory receptor, family 4, subfamily K, member 8 pseudogene pseudo OR4K8P olfactory receptor, family 4, subfamily K, member 8 pseudogene O - 20121230 -9606 390843 LOC390843 - - - 18 18q11.2 eukaryotic translation initiation factor 4A3 pseudogene pseudo - - - - 20121230 -9606 390844 ARIH2P1 - ARIH2P HGNC:31732 18 18q12.1 ariadne homolog 2 pseudogene 1 pseudo ARIH2P1 ariadne homolog 2 pseudogene 1 O - 20121230 -9606 390846 LOC390846 hCG_1642947 - - 18 18q12.1 golgi SNAP receptor complex member 2 pseudogene pseudo - - - - 20121230 -9606 390848 RPS15AP35 - RPS15A_23_1592 HGNC:36768 18 18q12.1 ribosomal protein S15a pseudogene 35 pseudo RPS15AP35 ribosomal protein S15a pseudogene 35 O - 20121230 -9606 390856 RPL29P32 - RPL29_21_1603 HGNC:35834 18 18q21.2 ribosomal protein L29 pseudogene 32 pseudo RPL29P32 ribosomal protein L29 pseudogene 32 O - 20121230 -9606 390857 RPSAP57 - RPSA_29_1604 HGNC:35889 18 18q21.2 ribosomal protein SA pseudogene 57 pseudo RPSAP57 ribosomal protein SA pseudogene 57 O - 20121230 -9606 390858 OACYLP hCG_33730 ACYL3P HGNC:44362 18 18q21.32 O-acyltransferase like, pseudogene pseudo OACYLP O-acyltransferase like, pseudogene O - 20121230 -9606 390860 LOC390860 - - - 18 18q21.32 ribosomal protein, large, P0 pseudogene pseudo - - - - 20121230 -9606 390872 OR4F8P - OR4F20P|OR4F9P HGNC:15395 19 19p13.3 olfactory receptor, family 4, subfamily F, member 8 pseudogene pseudo OR4F8P olfactory receptor, family 4, subfamily F, member 8 pseudogene O - 20121230 -9606 390874 ONECUT3 - OC3 HGNC:13399|MIM:611294|Ensembl:ENSG00000205922|Vega:OTTHUMG00000172429 19 19p13.3 one cut homeobox 3 protein-coding ONECUT3 one cut homeobox 3 O OC-3|one cut domain family member 3|one cut domain, family member 3|transcription factor ONECUT-3 20121230 -9606 390876 LOC390876 - - - 19 19p13.3 ribosomal protein L35 pseudogene pseudo - - - - 20121230 -9606 390877 LOC390877 - - - 19 19p13.3 adenylate kinase isoenzyme 1-like protein-coding - - - - 20121209 -9606 390882 OR7G2 - OR19-6|OST260 HGNC:8466|Ensembl:ENSG00000170923|HPRD:15075|Vega:OTTHUMG00000179931 19 19p13.2 olfactory receptor, family 7, subfamily G, member 2 protein-coding OR7G2 olfactory receptor, family 7, subfamily G, member 2 O OR19-13|olfactory receptor 19-13|olfactory receptor 7G2|olfactory receptor OR19-6 20121230 -9606 390883 OR7G3 - OST085 HGNC:8467|Ensembl:ENSG00000170920|HPRD:15076|Vega:OTTHUMG00000165520 19 19p13.2 olfactory receptor, family 7, subfamily G, member 3 protein-coding OR7G3 olfactory receptor, family 7, subfamily G, member 3 O olfactory receptor 7G3|olfactory receptor OR19-9 20121230 -9606 390885 OR7E18P - HSTPCR26P|OR19-14|OR7E61|OR7E98P|TPCR26 HGNC:8389 19 19p13.2 olfactory receptor, family 7, subfamily E, member 18 pseudogene pseudo OR7E18P olfactory receptor, family 7, subfamily E, member 18 pseudogene O - 20121230 -9606 390886 OR7H1P - OR7H1 HGNC:8468 19 19p13.2 olfactory receptor, family 7, subfamily H, member 1 pseudogene pseudo OR7H1P olfactory receptor, family 7, subfamily H, member 1 pseudogene O - 20121230 -9606 390892 OR7A10 - BC85395_3|OR19-18 HGNC:8356|Ensembl:ENSG00000127515|HPRD:17780 19 19p13.12 olfactory receptor, family 7, subfamily A, member 10 protein-coding OR7A10 olfactory receptor, family 7, subfamily A, member 10 O OST027|olfactory receptor 7A10|olfactory receptor OR19-18 20121230 -9606 390894 OR7A2P - OLF4p|OR19-18|OR7A2|OR7A7|hg1003 HGNC:8370 19 19p13.12 olfactory receptor, family 7, subfamily A, member 2 pseudogene pseudo OR7A2P olfactory receptor, family 7, subfamily A, member 2 pseudogene O - 20121230 -9606 390895 OR7A1P - OLF4p|OR19-3|OR7A6P|hg513 HGNC:8364 19 19p13.12 olfactory receptor, family 7, subfamily A, member 1 pseudogene pseudo OR7A1P olfactory receptor, family 7, subfamily A, member 1 pseudogene O - 20121230 -9606 390904 KRT18P40 - - HGNC:33409 19 19p12 keratin 18 pseudogene 40 pseudo KRT18P40 keratin 18 pseudogene 40 O - 20121230 -9606 390916 NUDT19 - RP2 HGNC:32036|Ensembl:ENSG00000213965|Vega:OTTHUMG00000180228 19 19q13.11 nudix (nucleoside diphosphate linked moiety X)-type motif 19 protein-coding NUDT19 nudix (nucleoside diphosphate linked moiety X)-type motif 19 O nucleoside diphosphate-linked moiety X motif 19, mitochondrial|nudix motif 19 20121230 -9606 390924 EEF1A1P7 - EEF1AL5 HGNC:3202 19 19q13.12 eukaryotic translation elongation factor 1 alpha 1 pseudogene 7 pseudo EEF1A1P7 eukaryotic translation elongation factor 1 alpha 1 pseudogene 7 O - 20121230 -9606 390927 ZNF793 - - HGNC:33115|Ensembl:ENSG00000188227|HPRD:18402|Vega:OTTHUMG00000182003 19 19q13.12 zinc finger protein 793 protein-coding ZNF793 zinc finger protein 793 O - 20121230 -9606 390928 PAPL - - MIM:610490|Ensembl:ENSG00000183760|HPRD:13361 19 19q13.2 iron/zinc purple acid phosphatase-like protein protein-coding - - - purple acid phosphatase long form 20121230 -9606 390933 LOC390933 - - - 19 19q13.2 protein associated with topoisomerase II homolog 1 (yeast) pseudogene pseudo - - - - 20121230 -9606 390937 LOC390937 - - - 19 19q13.2 Ets2 repressor factor-like protein-coding - - - - 20121216 -9606 390940 PINLYP - - HGNC:44206|Ensembl:ENSG00000234465|Vega:OTTHUMG00000175560 19 19q13.31 phospholipase A2 inhibitor and LY6/PLAUR domain containing protein-coding PINLYP phospholipase A2 inhibitor and LY6/PLAUR domain containing O phospholipase A2 inhibitor and Ly6/PLAUR domain-containing protein 20121230 -9606 390948 LOC390948 - - - 19 19q13.32 heterogeneous nuclear ribonucleoprotein M pseudogene pseudo - - - - 20121230 -9606 390949 RPL23AP80 - RPL23A_35_1661 HGNC:36956 19 19q13.33 ribosomal protein L23a pseudogene 80 pseudo RPL23AP80 ribosomal protein L23a pseudogene 80 O - 20121230 -9606 390956 LOC390956 - - - 19 19q13.41 peptidyl-prolyl cis-trans isomerase A-like protein-coding - - - - 20121209 -9606 390963 ZNF818P - ZNF818 HGNC:33265|HPRD:13537 19 19q13.42 zinc finger protein 818, pseudogene pseudo ZNF818P zinc finger protein 818, pseudogene O - 20121230 -9606 390980 ZNF805 - - HGNC:23272|Ensembl:ENSG00000204524|HPRD:18617 19 19q13.43 zinc finger protein 805 protein-coding ZNF805 zinc finger protein 805 O - 20121230 -9606 390992 HES3 RP1-120G22.7 bHLHb43 HGNC:26226|MIM:609971|Ensembl:ENSG00000173673|HPRD:18618|Vega:OTTHUMG00000001271 1 1p36.31 hairy and enhancer of split 3 (Drosophila) protein-coding HES3 hairy and enhancer of split 3 (Drosophila) O class B basic helix-loop-helix protein 43|transcription factor HES-3 20121230 -9606 390993 RPL7AP18 CTA-215D11.4 RPL7A_1_5 HGNC:35613 1 1p36.23 ribosomal protein L7a pseudogene 18 pseudo RPL7AP18 ribosomal protein L7a pseudogene 18 O - 20121230 -9606 390996 CFL1P6 - CFLP6 HGNC:34545 1 1p36.22 cofilin 1 (non-muscle) pseudogene 6 pseudo CFL1P6 cofilin 1 (non-muscle) pseudogene 6 O - 20121230 -9606 390997 LOC390997 - - - 1 1p36.22 SET binding factor 1 pseudogene pseudo - - - - 20121230 -9606 390998 LOC390998 - - - 1 1p36.22 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 390999 PRAMEF12 - - HGNC:22125|Ensembl:ENSG00000116726|Vega:OTTHUMG00000001927 1 1p36.21 PRAME family member 12 protein-coding PRAMEF12 PRAME family member 12 O - 20121230 -9606 391001 PRAMEF21 RP11-219C24.1 - HGNC:22405|Ensembl:ENSG00000204486|Vega:OTTHUMG00000002919 1 1p36.21 PRAME family member 21 protein-coding PRAMEF21 PRAME family member 21 O OTTHUMT00000008157|PRAME family member 20/21 20121230 -9606 391002 PRAMEF8 - - HGNC:24074|Ensembl:ENSG00000182330|HPRD:17382|Vega:OTTHUMG00000008037 1 1p36.21 PRAME family member 8 protein-coding PRAMEF8 PRAME family member 8 O - 20121230 -9606 391003 PRAMEF18 RP11-219C24.3 - HGNC:30693|Ensembl:ENSG00000204491|Vega:OTTHUMG00000002932 1 1p36.21 PRAME family member 18 protein-coding PRAMEF18 PRAME family member 18 O - 20121216 -9606 391004 PRAMEF17 RP11-133N1.1 - HGNC:29485|Ensembl:ENSG00000204479|Vega:OTTHUMG00000007909 1 1p36.21 PRAME family member 17 protein-coding PRAMEF17 PRAME family member 17 O - 20121230 -9606 391012 LOC391012 - - - 1 1p36.13 dynein, light chain, LC8-type 1 pseudogene pseudo - - - - 20121230 -9606 391013 PLA2G2C RP3-340N1.3 - HGNC:9032|Ensembl:ENSG00000187980 1 1p36.12 phospholipase A2, group IIC protein-coding PLA2G2C phospholipase A2, group IIC O phosphatidylcholine 2-acylhydrolase-like protein GIIC|phospholipase A2, group IIC (possible pseudogene)|putative inactive group IIC secretory phospholipase A2 20121230 -9606 391019 RPL29P6 - RPL29_1_20 HGNC:36627 1 1p36.12 ribosomal protein L29 pseudogene 6 pseudo RPL29P6 ribosomal protein L29 pseudogene 6 O - 20121230 -9606 391020 LOC391020 - - - 1 1p36.11 interferon induced transmembrane protein 3 pseudogene pseudo - - - - 20121230 -9606 391026 ACTN4P2 - - HGNC:44032 1 1p34.3 actinin, alpha 4 pseudogene 2 pseudo ACTN4P2 actinin, alpha 4 pseudogene 2 O - 20121209 -9606 391033 MKRN8P - MKRNP4|ZNF127L4 HGNC:7120 1 1p34.2 makorin ring finger protein 8, pseudogene pseudo MKRN8P makorin ring finger protein 8, pseudogene O - 20121230 -9606 391037 SKINTL - SKINT1|SKINTP HGNC:33993 1 1p33 Skint-like, pseudogene pseudo SKINTL Skint-like, pseudogene O - 20121230 -9606 391039 CFL1P2 - CFLL2|CFLP2 HGNC:1878 1 1p32.3 cofilin 1 (non-muscle) pseudogene 2 pseudo CFL1P2 cofilin 1 (non-muscle) pseudogene 2 O - 20121230 -9606 391040 BTF3L4P3 - - HGNC:39647 6 6q23.3 basic transcription factor 3-like 4 pseudogene 3 pseudo BTF3L4P3 basic transcription factor 3-like 4 pseudogene 3 O - 20121230 -9606 391044 PHBP3 - - HGNC:8915 1 1p32.1 prohibitin pseudogene 3 pseudo PHBP3 prohibitin pseudogene 3 O - 20121230 -9606 391045 SLC2A3P2 - - HGNC:31074 1 1p31.3 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 2 pseudo SLC2A3P2 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 2 O - 20121230 -9606 391048 LOC391048 - - - 1 1p31.1 cysteine and histidine-rich domain (CHORD) containing 1 pseudogene pseudo - - - - 20121230 -9606 391051 UOX - UOXP|URICASE HGNC:12575|MIM:191540 1 1p22 urate oxidase, pseudogene pseudo UOX urate oxidase, pseudogene O - 20121230 -9606 391053 CAPNS1P1 - - HGNC:39562 1 1p22.2 calpain, small subunit 1 pseudogene 1 pseudo CAPNS1P1 calpain, small subunit 1 pseudogene 1 O - 20121230 -9606 391059 FRRS1 - SDFR2|SDR2 HGNC:27622|MIM:611578|Ensembl:ENSG00000156869|HPRD:18403|Vega:OTTHUMG00000010768 1 1p21.2 ferric-chelate reductase 1 protein-coding FRRS1 ferric-chelate reductase 1 O SDR-2|stromal cell derived factor receptor 2 homolog|stromal cell-derived receptor 2 20121230 -9606 391069 GAPDHP64 RP4-686J16.2 GAPDHL9|GAPDL9 HGNC:4158 1 1p13.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 64 pseudo GAPDHP64 glyceraldehyde-3-phosphate dehydrogenase pseudogene 64 O - 20121230 -9606 391073 LOC391073 - - - 1 1p12 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20121230 -9606 391075 GAPDHP23 - - HGNC:37775 1 1p12 glyceraldehyde 3 phosphate dehydrogenase pseudogene 23 pseudo GAPDHP23 glyceraldehyde 3 phosphate dehydrogenase pseudogene 23 O - 20121230 -9606 391076 HSD3BP1 - - HGNC:5219 1 1p13.3 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 1 pseudo HSD3BP1 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 1 O - 20121230 -9606 391077 GAPDHP58 - GAPDHL1|GAPDL1 HGNC:4142 1 1p12 glyceraldehyde 3 phosphate dehydrogenase pseudogene 58 pseudo GAPDHP58 glyceraldehyde 3 phosphate dehydrogenase pseudogene 58 O - 20121230 -9606 391081 HSD3BP5 - - HGNC:5223 1 1p13.1 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5 pseudo HSD3BP5 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5 O - 20121230 -9606 391092 LOC391092 - - - 1 1q21.2 PRAME family member 17 pseudogene pseudo - - - - 20121230 -9606 391099 KRT8P28 - - HGNC:33380 1 1q21.3 keratin 8 pseudogene 28 pseudo KRT8P28 keratin 8 pseudogene 28 O - 20121230 -9606 391102 RPLP0P4 - RPLP0_1_100 HGNC:36489 1 1q21.3 ribosomal protein, large, P0 pseudogene 4 pseudo RPLP0P4 ribosomal protein, large, P0 pseudogene 4 O - 20121230 -9606 391104 VHLL - VHLP|VLP HGNC:30666|Ensembl:ENSG00000189030|HPRD:15648|Vega:OTTHUMG00000024058 1 1q22 von Hippel-Lindau tumor suppressor-like protein-coding VHLL von Hippel-Lindau tumor suppressor-like O VHL pseudogene|VHL-like protein|von Hippel-Lindau-like protein 20121230 -9606 391106 VDAC1P9 - - HGNC:37484 1 1q23.1 voltage-dependent anion channel 1 pseudogene 9 pseudo VDAC1P9 voltage-dependent anion channel 1 pseudogene 9 O - 20121230 -9606 391107 OR10K2 - OR1-4 HGNC:14826|Ensembl:ENSG00000180708|HPRD:14894|Vega:OTTHUMG00000019638 1 1q23.1 olfactory receptor, family 10, subfamily K, member 2 protein-coding OR10K2 olfactory receptor, family 10, subfamily K, member 2 O olfactory receptor 10K2|olfactory receptor OR1-4 20121230 -9606 391109 OR10K1 - OR1-6 HGNC:14693|Ensembl:ENSG00000173285|HPRD:14893|Vega:OTTHUMG00000017517 1 1q23.1 olfactory receptor, family 10, subfamily K, member 1 protein-coding OR10K1 olfactory receptor, family 10, subfamily K, member 1 O olfactory receptor 10K1|olfactory receptor OR1-6 20121230 -9606 391110 OR10R3P - OR1-9 HGNC:14829 1 1q23.1 olfactory receptor, family 10, subfamily R, member 3 pseudogene pseudo OR10R3P olfactory receptor, family 10, subfamily R, member 3 pseudogene O - 20121230 -9606 391112 OR6Y1 - OR1-11|OR6Y2 HGNC:14823|Ensembl:ENSG00000197532|HPRD:15071|Vega:OTTHUMG00000019629 1 1q23.1 olfactory receptor, family 6, subfamily Y, member 1 protein-coding OR6Y1 olfactory receptor, family 6, subfamily Y, member 1 O olfactory receptor 6Y1|olfactory receptor 6Y2|olfactory receptor OR1-11 20121230 -9606 391114 OR6K3 - OR1-18 HGNC:15030|Ensembl:ENSG00000203757|HPRD:15064|Vega:OTTHUMG00000022770 1 1q23.1 olfactory receptor, family 6, subfamily K, member 3 protein-coding OR6K3 olfactory receptor, family 6, subfamily K, member 3 O olfactory receptor 6K3|olfactory receptor OR1-18|seven transmembrane helix receptor 20121230 -9606 391115 OR6K5P - - HGNC:15032 1 1q23.1 olfactory receptor, family 6, subfamily K, member 5 pseudogene pseudo OR6K5P olfactory receptor, family 6, subfamily K, member 5 pseudogene O - 20121230 -9606 391117 OR10J2P - - HGNC:14991 1 1q23.2 olfactory receptor, family 10, subfamily J, member 2 pseudogene pseudo OR10J2P olfactory receptor, family 10, subfamily J, member 2 pseudogene O - 20121230 -9606 391119 OR10J7P - - HGNC:19637 1 1q23.2 olfactory receptor, family 10, subfamily J, member 7 pseudogene pseudo OR10J7P olfactory receptor, family 10, subfamily J, member 7 pseudogene O - 20121230 -9606 391120 OR10J9P - - HGNC:19639 1 1q23.2 olfactory receptor, family 10, subfamily J, member 9 pseudogene pseudo OR10J9P olfactory receptor, family 10, subfamily J, member 9 pseudogene O - 20121230 -9606 391121 OR10J4 - OR10J4P|OST717 HGNC:15408 1 1q23.2 olfactory receptor, family 10, subfamily J, member 4 (gene/pseudogene) pseudo OR10J4 olfactory receptor, family 10, subfamily J, member 4 (gene/pseudogene) O - 20121230 -9606 391123 VSIG8 RP11-190A12.5 - HGNC:32063|Ensembl:ENSG00000243284|HPRD:18404|Vega:OTTHUMG00000168834 1 1q23.2 V-set and immunoglobulin domain containing 8 protein-coding VSIG8 V-set and immunoglobulin domain containing 8 O V-set and immunoglobulin domain-containing protein 8 20121230 -9606 391124 RPL27AP2 hCG_2041321 RPL27A_1_106 HGNC:36238 1 1q23.2 ribosomal protein L27a pseudogene 2 pseudo RPL27AP2 ribosomal protein L27a pseudogene 2 O - 20121230 -9606 391126 RPL26P12 - RPL26_4_113 HGNC:36025 1 1q24.1 ribosomal protein L26 pseudogene 12 pseudo RPL26P12 ribosomal protein L26 pseudogene 12 O - 20121230 -9606 391130 RPS17P6 - RPS17_1_116 HGNC:36945 1 1q24.1 ribosomal protein S17 pseudogene 6 pseudo RPS17P6 ribosomal protein S17 pseudogene 6 O - 20121230 -9606 391135 RPL4P3 - RPL4_1_122 HGNC:35773 1 1q24.3 ribosomal protein L4 pseudogene 3 pseudo RPL4P3 ribosomal protein L4 pseudogene 3 O - 20121230 -9606 391136 LOC391136 - - - 1 1q24.3 RNA binding motif protein 3 pseudogene pseudo - - - - 20121230 -9606 391137 RPS15P3 - RPS15_2_123 HGNC:35563 1 1q24.3 ribosomal protein S15 pseudogene 3 pseudo RPS15P3 ribosomal protein S15 pseudogene 3 O - 20121230 -9606 391139 GOT2P2 RP3-395P12.1 GOT2L2 HGNC:4435 1 1q25.1 glutamic-oxaloacetic transaminase 2 pseudogene 2 pseudo GOT2P2 glutamic-oxaloacetic transaminase 2 pseudogene 2 O - 20121230 -9606 391140 RPL13P7 - RPL13_1_131 HGNC:35510 1 1q25.2 ribosomal protein L13 pseudogene 7 pseudo RPL13P7 ribosomal protein L13 pseudogene 7 O - 20121230 -9606 391151 RPL10P4 - - - 1 1q32.1 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 391155 KRT8P29 - - HGNC:33381 1 1q32.1 keratin 8 pseudogene 29 pseudo KRT8P29 keratin 8 pseudogene 29 O - 20121230 -9606 391158 TFDP1P - - HGNC:11750 1 1q32.2 transcription factor Dp-1 pseudogene pseudo TFDP1P transcription factor Dp-1 pseudogene O - 20121230 -9606 391160 ARPC3P2 - - HGNC:39431 1 1q32.3 actin related protein 2/3 complex, subunit 3 pseudogene 2 pseudo ARPC3P2 actin related protein 2/3 complex, subunit 3 pseudogene 2 O - 20121230 -9606 391162 GAPDHP24 - - HGNC:37776 1 1q41 glyceraldehyde 3 phosphate dehydrogenase pseudogene 24 pseudo GAPDHP24 glyceraldehyde 3 phosphate dehydrogenase pseudogene 24 O - 20121230 -9606 391165 RPS26P17 - RPS26_2_165 HGNC:36681 1 1q41 ribosomal protein S26 pseudogene 17 pseudo RPS26P17 ribosomal protein S26 pseudogene 17 O - 20121230 -9606 391168 RPS3AP7 - RPS3A_5_169 HGNC:36376 1 1q42.12 ribosomal protein S3a pseudogene 7 pseudo RPS3AP7 ribosomal protein S3a pseudogene 7 O - 20121230 -9606 391169 CDKN2AIPNLP1 RP11-118H4.2 - HGNC:39854 1 1q42.12 CDKN2A interacting protein N-terminal like pseudogene 1 pseudo CDKN2AIPNLP1 CDKN2A interacting protein N-terminal like pseudogene 1 O - 20121230 -9606 391171 LOC391171 - - - 1 1q42.13 tubulin, beta 8 class VIII pseudogene pseudo - - - - 20121230 -9606 391174 FAM96AP2 - - HGNC:43862 1 1q42.13 family with sequence similarity 96, member A pseudogene 2 pseudo FAM96AP2 family with sequence similarity 96, member A pseudogene 2 O - 20121230 -9606 391175 RPL23AP15 RP5-915N17.3 RPL23A_4_173 HGNC:36486 1 1q42.13 ribosomal protein L23a pseudogene 15 pseudo RPL23AP15 ribosomal protein L23a pseudogene 15 O - 20121230 -9606 391179 KRT18P32 - - HGNC:33401 1 1q43 keratin 18 pseudogene 32 pseudo KRT18P32 keratin 18 pseudogene 32 O - 20121230 -9606 391181 RPL6P3 - RPL6_2_187 HGNC:35925 1 1q43 ribosomal protein L6 pseudogene 3 pseudo RPL6P3 ribosomal protein L6 pseudogene 3 O - 20121230 -9606 391183 RSL24D1P4 - RSL24D1P19 HGNC:37884 1 1q43 ribosomal L24 domain containing 1 pseudogene 4 pseudo RSL24D1P4 ribosomal L24 domain containing 1 pseudogene 4 O - 20121230 -9606 391189 OR11L1 - - HGNC:14998|Ensembl:ENSG00000197591|HPRD:17677|Vega:OTTHUMG00000040193 1 1q44 olfactory receptor, family 11, subfamily L, member 1 protein-coding OR11L1 olfactory receptor, family 11, subfamily L, member 1 O olfactory receptor 11L1|olfactory receptor OR1-50 20121230 -9606 391190 OR2L8 - - HGNC:15014|Ensembl:ENSG00000196936|HPRD:14944|Vega:OTTHUMG00000040196 1 1q44 olfactory receptor, family 2, subfamily L, member 8 protein-coding OR2L8 olfactory receptor, family 2, subfamily L, member 8 O olfactory receptor 2L8|olfactory receptor OR1-46 20121230 -9606 391191 OR2AK2 - OR1-47|OR2AK1P HGNC:19569|Ensembl:ENSG00000187080|HPRD:17693|Vega:OTTHUMG00000040201 1 1q44 olfactory receptor, family 2, subfamily AK, member 2 protein-coding OR2AK2 olfactory receptor, family 2, subfamily AK, member 2 O olfactory receptor 2AK1|olfactory receptor 2AK2|olfactory receptor OR1-47|olfactory receptor, family 2, subfamily AK, member 1 pseudogene 20121230 -9606 391192 OR2L3 - - HGNC:15009|Ensembl:ENSG00000198128|HPRD:14943|Vega:OTTHUMG00000040195 1 1q44 olfactory receptor, family 2, subfamily L, member 3 protein-coding OR2L3 olfactory receptor, family 2, subfamily L, member 3 O olfactory receptor 2L3 20121230 -9606 391194 OR2M2 RP11-230L4.3 OR2M2Q|OST423 HGNC:8268|Ensembl:ENSG00000198601|HPRD:17703|Vega:OTTHUMG00000040460 1 1q44 olfactory receptor, family 2, subfamily M, member 2 protein-coding OR2M2 olfactory receptor, family 2, subfamily M, member 2 O olfactory receptor 2M2 20121230 -9606 391195 OR2T33 - OR1-56 HGNC:31255|Ensembl:ENSG00000177212|HPRD:14953|Vega:OTTHUMG00000040458 1 1q44 olfactory receptor, family 2, subfamily T, member 33 protein-coding OR2T33 olfactory receptor, family 2, subfamily T, member 33 O novel 7 transmembrane receptor (rhodopsin family) protein|olfactory receptor 2T33|olfactory receptor OR1-56 20121230 -9606 391196 OR2M7 - OR1-58 HGNC:19594|Ensembl:ENSG00000177186|HPRD:14948|Vega:OTTHUMG00000040461 1 1q44 olfactory receptor, family 2, subfamily M, member 7 protein-coding OR2M7 olfactory receptor, family 2, subfamily M, member 7 O olfactory receptor 2M7|olfactory receptor OR1-58 20121230 -9606 391211 OR2G6 RP11-280A15.1 - HGNC:27019|Ensembl:ENSG00000188558|HPRD:18487|Vega:OTTHUMG00000040462 1 1q44 olfactory receptor, family 2, subfamily G, member 6 protein-coding OR2G6 olfactory receptor, family 2, subfamily G, member 6 O olfactory receptor 2G6 20121230 -9606 391230 LOC391230 - - - 20 20p12.3 KN motif and ankyrin repeat domain-containing protein 1-like protein-coding - - - - 20120825 -9606 391239 LOC391239 - - - 20 20p11.21 V-set domain containing T cell activation inhibitor 1 pseudogene pseudo - - - - 20121230 -9606 391242 HDHD1P3 - HDHD1DP HGNC:38118 20 20q11.21 haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 3 pseudo HDHD1P3 haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 3 O - 20121230 -9606 391247 LOC391247 - - - 20 20q11.23 GINS complex subunit 2 (Psf2 homolog) pseudogene pseudo - - - - 20121230 -9606 391253 SPINT4 - C20orf137|SPINT3|dJ601O1.1 HGNC:16130|Ensembl:ENSG00000149651|Vega:OTTHUMG00000130153 20 20q13.12 serine peptidase inhibitor, Kunitz type 4 protein-coding SPINT4 serine peptidase inhibitor, Kunitz type 4 O kunitz-type protease inhibitor 4|serine protease inhibitor, Kunitz type 1|serine protease inhibitor, Kunitz type 4 20121230 -9606 391256 KRT18P4 - dJ963K23.1 HGNC:16604|Vega:OTTHUMG00000032705 20 20q13.13 keratin 18 pseudogene 4 pseudo KRT18P4 keratin 18 pseudogene 4 O - 20121230 -9606 391257 SUMO1P1 - PIC1L|UBL2|UBL6 HGNC:33148 20 20q13.2 SUMO1 pseudogene 1 pseudo SUMO1P1 SUMO1 pseudogene 1 O - 20121230 -9606 391266 CNN2P7 - - HGNC:39532 21 21q11.2 calponin 2 pseudogene 7 pseudo CNN2P7 calponin 2 pseudogene 7 O - 20121230 -9606 391267 ANKRD20A11P - C21orf81 HGNC:42024 21 21q11.2 ankyrin repeat domain 20 family, member A11, pseudogene pseudo ANKRD20A11P ankyrin repeat domain 20 family, member A11, pseudogene O - 20121230 -9606 391269 ANKRD20A18P - C21orf126 HGNC:23756 21 21q11.2 ankyrin repeat domain 20 family, member A18, pseudogene pseudo ANKRD20A18P ankyrin repeat domain 20 family, member A18, pseudogene O - 20121230 -9606 391276 THUMPD1P1 - - HGNC:23808 21 21q21.3 THUMP domain containing 1 pseudogene 1 pseudo THUMPD1P1 THUMP domain containing 1 pseudogene 1 O - 20121230 -9606 391279 OR7E23P - OR21-1|OR21-3|OR7E92P HGNC:8395 21 21q22.11 olfactory receptor, family 7, subfamily E, member 23 pseudogene pseudo OR7E23P olfactory receptor, family 7, subfamily E, member 23 pseudogene O - 20121230 -9606 391282 RPL23AP12 - RPL23A_41_1732 HGNC:23840 21 21q22.2 ribosomal protein L23a pseudogene 12 pseudo RPL23AP12 ribosomal protein L23a pseudogene 12 O - 20121230 -9606 391322 LOC391322 - - - 22 22q11.23 D-dopachrome tautomerase-like protein-coding - - - D-dopachrome decarboxylase related protein 20121230 -9606 391334 LOC391334 - - - 22 22q13.2 actin, gamma 2, smooth muscle, enteric pseudogene pseudo - - - - 20121230 -9606 391343 C2orf90 - - HGNC:37251|HPRD:18405 2 2p25.3 chromosome 2 open reading frame 90 unknown C2orf90 chromosome 2 open reading frame 90 O - 20120511 -9606 391349 LOC391349 - - - 2 2p25.2 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta pseudogene pseudo - - - - 20121230 -9606 391356 PTRHD1 - C2orf79 HGNC:33782|Ensembl:ENSG00000184924|HPRD:18406|Vega:OTTHUMG00000151978 2 2p23.3 peptidyl-tRNA hydrolase domain containing 1 protein-coding PTRHD1 peptidyl-tRNA hydrolase domain containing 1 O peptidyl-tRNA hydrolase domain-containing protein 1|putative peptidyl-tRNA hydrolase PTRHD1 20121230 -9606 391358 TRMT112P6 - - HGNC:44025 2 2p23.3 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 6 pseudo TRMT112P6 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 6 O - 20121230 -9606 391359 LOC391359 - - - 2 2p23.3 epithelial membrane protein 2 pseudogene pseudo - - - - 20121230 -9606 391365 SULT6B1 - - HGNC:33433|Ensembl:ENSG00000138068|Vega:OTTHUMG00000152160 2 2p22.2 sulfotransferase family, cytosolic, 6B, member 1 protein-coding SULT6B1 sulfotransferase family, cytosolic, 6B, member 1 O ST6B1|sulfotransferase 6B1|sulfotransferase SULT6B1|thyroxine sulfotransferase 20121230 -9606 391367 GAPDHP25 - - HGNC:37777 2 2p22.2 glyceraldehyde 3 phosphate dehydrogenase pseudogene 25 pseudo GAPDHP25 glyceraldehyde 3 phosphate dehydrogenase pseudogene 25 O - 20121230 -9606 391370 RPS12P4 - RPS12_1_210 HGNC:35670 2 2p21 ribosomal protein S12 pseudogene 4 pseudo RPS12P4 ribosomal protein S12 pseudogene 4 O - 20121230 -9606 391378 LOC391378 - - - 2 2p15 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 391383 LOC391383 - - - 2 2p13.3 WD repeat domain 4 pseudogene pseudo - - - - 20121230 -9606 391387 RPSAP28 - RPSA_4_242 HGNC:35612 2 2p13.1 ribosomal protein SA pseudogene 28 pseudo RPSAP28 ribosomal protein SA pseudogene 28 O - 20121230 -9606 391405 LOC391405 - - - 2 2p11.1 immunoglobulin kappa light chain variable region other - - - - 20121102 -9606 391428 SEPHS1P7 - - HGNC:42167 2 2q14.1 selenophosphate synthetase 1 pseudogene 7 pseudo SEPHS1P7 selenophosphate synthetase 1 pseudogene 7 O - 20121230 -9606 391436 LOC391436 - - - 2 2q21.1 mediator complex subunit 15 pseudogene pseudo - - - - 20121230 -9606 391448 LOC391448 - - - 2 2q21.3 mannosidase, endo-alpha-like pseudogene pseudo - - - - 20121230 -9606 391458 KRT18P46 - - HGNC:33416 2 2q24.2 keratin 18 pseudogene 46 pseudo KRT18P46 keratin 18 pseudogene 46 O - 20121230 -9606 391462 RPSAP24 - RPSA_6_295 HGNC:36362 2 2q31.1 ribosomal protein SA pseudogene 24 pseudo RPSAP24 ribosomal protein SA pseudogene 24 O - 20121230 -9606 391465 LOC391465 - - - 2 2q31.2 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 391467 IMPDH1P7 - - HGNC:33962 2 2q32.1 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 7 pseudo IMPDH1P7 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 7 O - 20121230 -9606 391470 LOC391470 - - - 2 2q32.3 adenosylhomocysteinase pseudogene pseudo - - - - 20121230 -9606 391472 LOC391472 - - - 2 2q33.1 bicaudal D homolog 1 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 391475 DYTN - - HGNC:23279|Ensembl:ENSG00000232125|Vega:OTTHUMG00000154729 2 2q33.3 dystrotelin protein-coding DYTN dystrotelin O - 20121230 -9606 391485 KRT8P30 - - HGNC:33382 2 2q35 keratin 8 pseudogene 30 pseudo KRT8P30 keratin 8 pseudogene 30 O - 20121230 -9606 391490 RPL23AP26 - RPL23A_14_334 HGNC:35592 2 2q37.1 ribosomal protein L23a pseudogene 26 pseudo RPL23AP26 ribosomal protein L23a pseudogene 26 O - 20121230 -9606 391491 GAMTP1 - GAMTP HGNC:33982 2 2q37.1 guanidinoacetate N-methyltransferase pseudogene 1 pseudo GAMTP1 guanidinoacetate N-methyltransferase pseudogene 1 O - 20121230 -9606 391496 OR5S1P - - HGNC:15040 2 2q37.3 olfactory receptor, family 5, subfamily S, member 1 pseudogene pseudo OR5S1P olfactory receptor, family 5, subfamily S, member 1 pseudogene O - 20121230 -9606 391504 RPL23AP38 - RPL23A_11_340 HGNC:36351 3 3p26.3 ribosomal protein L23a pseudogene 38 pseudo RPL23AP38 ribosomal protein L23a pseudogene 38 O - 20121230 -9606 391508 PGAM1P4 - - HGNC:42451 3 3p25.3 phosphoglycerate mutase 1 pseudogene 4 pseudo PGAM1P4 phosphoglycerate mutase 1 pseudogene 4 O - 20121230 -9606 391518 VENTXP7 - HPX42|VENTX1 HGNC:13638 3 3p24.3 VENT homeobox pseudogene 7 pseudo VENTXP7 VENT homeobox pseudogene 7 O - 20121230 -9606 391524 THRAP3P1 - THRAP3L HGNC:32386 3 3p24.1 thyroid hormone receptor associated protein 3 pseudogene 1 pseudo THRAP3P1 thyroid hormone receptor associated protein 3 pseudogene 1 O - 20121230 -9606 391526 IGBP1P3 - - HGNC:43612 3 3p22.3 immunoglobulin (CD79A) binding protein 1 pseudogene 3 pseudo IGBP1P3 immunoglobulin (CD79A) binding protein 1 pseudogene 3 O - 20121230 -9606 391530 SALL4P6 - - HGNC:39823 3 3p22.1 sal-like 4 (Drosophila) pseudogene 6 pseudo SALL4P6 sal-like 4 (Drosophila) pseudogene 6 O - 20121230 -9606 391532 LOC391532 - - - 15 15q24.2 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 391533 FLT1P1 - - HGNC:44609 3 3p21.31 fms-related tyrosine kinase 1 pseudogene 1 pseudo FLT1P1 fms-related tyrosine kinase 1 pseudogene 1 O - 20121230 -9606 391538 ALDOAP1 - - HGNC:415 3 3p21.2 aldolase A, fructose-bisphosphate pseudogene 1 pseudo ALDOAP1 aldolase A, fructose-bisphosphate pseudogene 1 O - 20121230 -9606 391539 RPS25P4 - RPS25_2_371 HGNC:35669 3 3p21.1 ribosomal protein S25 pseudogene 4 pseudo RPS25P4 ribosomal protein S25 pseudogene 4 O - 20121230 -9606 391548 OR7E55P - OR2DG|OR3.2|OR7E56P|OR7E57P|OST007|OST013 HGNC:8430 3 3p12.3 olfactory receptor, family 7, subfamily E, member 55 pseudogene pseudo OR7E55P olfactory receptor, family 7, subfamily E, member 55 pseudogene O - 20121230 -9606 391552 AGGF1P3 - - HGNC:38053 3 3p12.3 angiogenic factor with G patch and FHA domains 1 pseudogene 3 pseudo AGGF1P3 angiogenic factor with G patch and FHA domains 1 pseudogene 3 O - 20121230 -9606 391556 LOC391556 - - - 3 3q11.2 retinoblastoma binding protein 4 pseudogene pseudo - - - - 20121230 -9606 391559 VTI1BP1 - - HGNC:43727 3 3q12.1 vesicle transport through interaction with t-SNAREs 1B pseudogene 1 pseudo VTI1BP1 vesicle transport through interaction with t-SNAREs 1B pseudogene 1 O - 20121230 -9606 391560 RPL32P7 - RPL32_1_390 HGNC:35804 3 3q12.3 ribosomal protein L32 pseudogene 7 pseudo RPL32P7 ribosomal protein L32 pseudogene 7 O - 20121230 -9606 391562 LOC391562 - - - 3 3q13.11 ezrin pseudogene pseudo - - - - 20121230 -9606 391566 LOC391566 - - - 3 3q13.31 histone cluster 1, H2bj pseudogene pseudo - - - - 20121230 -9606 391576 OR7E129P - - HGNC:15052 3 3q22.1 olfactory receptor, family 7, subfamily E, member 129 pseudogene pseudo OR7E129P olfactory receptor, family 7, subfamily E, member 129 pseudogene O - 20121230 -9606 391578 LOC391578 - - - 3 3q22.1 MAF1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 391581 RPL31P23 - RPL31_5_407 HGNC:36096 3 3q22.3 ribosomal protein L31 pseudogene 23 pseudo RPL31P23 ribosomal protein L31 pseudogene 23 O - 20121230 -9606 391584 KRT18P35 - - HGNC:33404 3 3q23 keratin 18 pseudogene 35 pseudo KRT18P35 keratin 18 pseudogene 35 O - 20121230 -9606 391587 LOC391587 - - - 3 3q25.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 391589 KRT18P34 - - HGNC:33403 3 3q25.31 keratin 18 pseudogene 34 pseudo KRT18P34 keratin 18 pseudogene 34 O - 20121230 -9606 391592 BZW1P1 - - HGNC:31378 3 3q26.31 basic leucine zipper and W2 domains 1 pseudogene 1 pseudo BZW1P1 basic leucine zipper and W2 domains 1 pseudogene 1 O - 20121230 -9606 391595 RPL32P10 - RPL32_3_439 HGNC:35641 3 3q26.33 ribosomal protein L32 pseudogene 10 pseudo RPL32P10 ribosomal protein L32 pseudogene 10 O - 20121230 -9606 391598 RPSAP31 - RPSA_11_442 HGNC:35558 3 3q27.1 ribosomal protein SA pseudogene 31 pseudo RPSAP31 ribosomal protein SA pseudogene 31 O - 20121230 -9606 391600 LOC391600 - - - 3 3q27.1 transmembrane epididymal protein 1 pseudogene pseudo - - - - 20121230 -9606 391603 LOC391603 - - - 3 3q28 nicotinamide nucleotide adenylyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 391622 USP17L6P - DUB4|USP17L6|vDUB4 HGNC:37179 4 4p16.1 ubiquitin specific peptidase 17-like family member 6, pseudogene pseudo USP17L6P ubiquitin specific peptidase 17-like family member 6, pseudogene O - 20121230 -9606 391627 USP17L9P hCG_1807742 RS447|USP17|USP17A|USP17H|USP17I|USP17J|USP17K|USP17L|USP17M HGNC:12615|MIM:607011 4 4p15 ubiquitin specific peptidase 17-like family member 9, pseudogene pseudo USP17L9P ubiquitin specific peptidase 17-like family member 9, pseudogene O - 20121223 -9606 391630 OR7E83P - OR7E134P HGNC:14688 4 4p16.1 olfactory receptor, family 7, subfamily E, member 83 pseudogene pseudo OR7E83P olfactory receptor, family 7, subfamily E, member 83 pseudogene O - 20121230 -9606 391632 OR7E35P - OR7E120|OST018 HGNC:8408 4 4p16.1 olfactory receptor, family 7, subfamily E, member 35 pseudogene pseudo OR7E35P olfactory receptor, family 7, subfamily E, member 35 pseudogene O - 20121230 -9606 391634 HSP90AB2P - HSP90BB HGNC:32537|HPRD:11811 4 4p15.33 heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene pseudo HSP90AB2P heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene O - 20121230 -9606 391636 LOC391636 - - - 4 4p15.33 chromosome 9 open reading frame 78 pseudogene pseudo - - - - 20121230 -9606 391642 IGBP1P5 - - HGNC:43614 4 4p15.2 immunoglobulin (CD79A) binding protein 1 pseudogene 5 pseudo IGBP1P5 immunoglobulin (CD79A) binding protein 1 pseudogene 5 O - 20121230 -9606 391647 KRT18P25 - - HGNC:33394 4 4p14 keratin 18 pseudogene 25 pseudo KRT18P25 keratin 18 pseudogene 25 O - 20121230 -9606 391655 RPL17P20 - RPL17_10_481 HGNC:36015 4 4q12 ribosomal protein L17 pseudogene 20 pseudo RPL17P20 ribosomal protein L17 pseudogene 20 O - 20121230 -9606 391656 RPS15AP17 - RPS15A_8_485 HGNC:36888 4 4q13.1 ribosomal protein S15a pseudogene 17 pseudo RPS15AP17 ribosomal protein S15a pseudogene 17 O - 20121230 -9606 391657 LOC391657 - - - 4 4q13.1 dipeptidyl-peptidase 3 pseudogene pseudo - - - - 20121230 -9606 391670 LOC391670 - - - 4 4q21.21 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 391672 IGBP1P4 - - HGNC:43613 4 4q21.22 immunoglobulin (CD79A) binding protein 1 pseudogene 4 pseudo IGBP1P4 immunoglobulin (CD79A) binding protein 1 pseudogene 4 O - 20121230 -9606 391674 LOC391674 - - - 4 4q21.23 aminomethyltransferase pseudogene pseudo - - - - 20121230 -9606 391679 RPL6P14 - RPL6_2_505 HGNC:35661 4 4q24 ribosomal protein L6 pseudogene 14 pseudo RPL6P14 ribosomal protein L6 pseudogene 14 O - 20121230 -9606 391681 EXOC7P1 - - HGNC:43871 4 4q25 exocyst complex component 7 pseudogene 1 pseudo EXOC7P1 exocyst complex component 7 pseudogene 1 O - 20121230 -9606 391686 LYPLA1P2 - - HGNC:44006 4 4q25 lysophospholipase I pseudogene 2 pseudo LYPLA1P2 lysophospholipase I pseudogene 2 O - 20121230 -9606 391696 TECRP2 - - HGNC:44051 4 4q28.1 trans-2,3-enoyl-CoA reductase pseudogene 2 pseudo TECRP2 trans-2,3-enoyl-CoA reductase pseudogene 2 O - 20121230 -9606 391697 ZSWIM5P3 - - HGNC:43770 4 4q28.2 zinc finger, SWIM-type containing 5 pseudogene 3 pseudo ZSWIM5P3 zinc finger, SWIM-type containing 5 pseudogene 3 O - 20121230 -9606 391698 EEF1GP8 - - HGNC:44563 4 4q28.2 eukaryotic translation elongation factor 1 gamma pseudogene 8 pseudo EEF1GP8 eukaryotic translation elongation factor 1 gamma pseudogene 8 O - 20121230 -9606 391701 RPS23P2 - RPS23_2_521 HGNC:36568 4 4q28.3 ribosomal protein S23 pseudogene 2 pseudo RPS23P2 ribosomal protein S23 pseudogene 2 O - 20121230 -9606 391703 KRT18P51 - - HGNC:33421 4 4q31.21 keratin 18 pseudogene 51 pseudo KRT18P51 keratin 18 pseudogene 51 O - 20121230 -9606 391706 RPS3AP18 - RPS3A_5_528 HGNC:35893 4 4q31.3 ribosomal protein S3a pseudogene 18 pseudo RPS3AP18 ribosomal protein S3a pseudogene 18 O - 20121230 -9606 391707 LOC391707 - - - 4 4q32.1 chromatin accessibility complex 1 pseudogene pseudo - - - - 20121230 -9606 391710 LOC391710 - - - 4 4q32.3 tripartite motif-containing 75 pseudogene pseudo - - - - 20121230 -9606 391711 LOC391711 - - - 4 4q32.3 tripartite motif-containing protein 60-like pseudo - - - - 20121230 -9606 391712 TRIM61 - RNF35 HGNC:24339|Ensembl:ENSG00000183439|HPRD:18225|Vega:OTTHUMG00000161266 4 4q32.3 tripartite motif containing 61 protein-coding TRIM61 tripartite motif containing 61 O putative tripartite motif-containing protein 61|ring finger protein 35|tripartite motif-containing 61 20121230 -9606 391713 LOC391713 - - - 4 4q32.3 tripartite motif-containing 75 pseudogene pseudo - - - - 20121230 -9606 391714 TRIM75 - - HGNC:32686 4 4q32.3 tripartite motif containing 75 pseudo TRIM75 tripartite motif containing 75 O - 20121230 -9606 391718 TSEN2P1 - - HGNC:43965 4 4q34.2 tRNA splicing endonuclease 2 homolog (S. cerevisiae) pseudogene 1 pseudo TSEN2P1 tRNA splicing endonuclease 2 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 391719 RPL19P8 - RPL19_5_537 HGNC:36696 4 4q34.3 ribosomal protein L19 pseudogene 8 pseudo RPL19P8 ribosomal protein L19 pseudogene 8 O - 20121230 -9606 391722 LOC391722 - - - 4 4q35.1 uncharacterized LOC391722 protein-coding - - - - 20121209 -9606 391723 HELT - HCM1228|HESL|Mgn|bHLHb44 HGNC:33783|Ensembl:ENSG00000187821|Vega:OTTHUMG00000160484 4 4q35.1 helt bHLH transcription factor protein-coding HELT helt bHLH transcription factor O HES/HEY-like transcription factor|Heslike|Hey-like transcription factor|Hey-like transcriptional repressor|Megane bHLH factor|hairy and enhancer of split-related protein HELT 20121230 -9606 391738 RPL29P13 - RPL29_5_543 HGNC:36461 5 5p15.2 ribosomal protein L29 pseudogene 13 pseudo RPL29P13 ribosomal protein L29 pseudogene 13 O - 20121230 -9606 391739 CCT6P2 - CCT6-1P HGNC:35150 5 5p15.2 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 2 pseudo CCT6P2 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 2 O - 20121230 -9606 391741 LOC391741 - - - 5 5p15.1 actin, beta-like 2 pseudogene pseudo - - - - 20121230 -9606 391742 LOC391742 - - - 5 5p15.1 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene pseudo - - - - 20121230 -9606 391744 LOC391744 - - - 5 5p15.1 H3 histone, family 3B (H3.3B) pseudogene pseudo - - - - 20121230 -9606 391746 LOC391746 - - - 5 5p15.1 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene pseudo - - - - 20121230 -9606 391747 LOC391747 - - - 5 5p15.1 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene pseudo - - - - 20121230 -9606 391765 LOC391765 - - - 5 5p15.1 H3 histone, family 3B (H3.3B) pseudogene pseudo - - - - 20121230 -9606 391768 LOC391768 - - - 5 5p15.1 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene pseudo - - - - 20121230 -9606 391769 H3.Y - - - 5 5p15.1 histone cluster 2, H3d pseudogene pseudo - - - - 20121230 -9606 391771 LOC391771 - - - 5 5p14.2 protein tyrosine phosphatase, non-receptor type 11 pseudogene pseudo - - - - 20121230 -9606 391777 RPS4XP6 - RPS4P6|RPS4X_2_555 HGNC:36057 5 5p13.2 ribosomal protein S4X pseudogene 6 pseudo RPS4XP6 ribosomal protein S4X pseudogene 6 O - 20121230 -9606 391798 LOC391798 - - - 5 5q13.3 karyopherin alpha 7 (importin alpha 8) pseudogene pseudo - - - - 20121230 -9606 391803 KRT18P45 - - HGNC:33415 5 5q14.1 keratin 18 pseudogene 45 pseudo KRT18P45 keratin 18 pseudogene 45 O - 20121230 -9606 391804 RBMX2P5 - - HGNC:39927 5 5q14.1 RNA binding motif protein, X-linked 2 pseudogene 5 pseudo RBMX2P5 RNA binding motif protein, X-linked 2 pseudogene 5 O - 20121230 -9606 391811 POLD2P1 - - HGNC:41522 5 5q15 polymerase (DNA directed), delta 2, accessory subunit pseudogene 1 pseudo POLD2P1 polymerase (DNA directed), delta 2, accessory subunit pseudogene 1 O - 20121230 -9606 391813 LOC391813 - - - 5 5q15 zinc finger, DHHC-type containing 3 pseudogene pseudo - - - - 20121230 -9606 391819 KRT18P42 - - HGNC:33412 5 5q21.3 keratin 18 pseudogene 42 pseudo KRT18P42 keratin 18 pseudogene 42 O - 20121230 -9606 391825 RPL23AP44 - RPL23A_14_607 HGNC:35955 5 5q23.1 ribosomal protein L23a pseudogene 44 pseudo RPL23AP44 ribosomal protein L23a pseudogene 44 O - 20121230 -9606 391827 KRT18P16 - - HGNC:33384 5 5q23.2 keratin 18 pseudogene 16 pseudo KRT18P16 keratin 18 pseudogene 16 O - 20121230 -9606 391828 RPL28P3 - RPL28_3_609 HGNC:35973 5 5q23.2 ribosomal protein L28 pseudogene 3 pseudo RPL28P3 ribosomal protein L28 pseudogene 3 O - 20121230 -9606 391833 RPS10P11 - RPS10_6_615 HGNC:36775 5 5q31.1 ribosomal protein S10 pseudogene 11 pseudo RPS10P11 ribosomal protein S10 pseudogene 11 O - 20121230 -9606 391834 LOC391834 - - - 5 5q31.1 ankyrin repeat domain 49 pseudogene pseudo - - - - 20121230 -9606 391836 RPL10AP10 - RPL10A_4_618 HGNC:35971 5 5q31.2 ribosomal protein L10a pseudogene 10 pseudo RPL10AP10 ribosomal protein L10a pseudogene 10 O - 20121230 -9606 391845 RPS15P6 - RPS15_3_634 HGNC:36653 5 5q34 ribosomal protein S15 pseudogene 6 pseudo RPS15P6 ribosomal protein S15 pseudogene 6 O - 20121230 -9606 391850 RPL7AP33 - RPL7A_12_639 HGNC:36679 5 5q35.1 ribosomal protein L7a pseudogene 33 pseudo RPL7AP33 ribosomal protein L7a pseudogene 33 O - 20121230 -9606 392027 LOC392027 - - - 7 7p12.1 ribosome binding protein 1 homolog 180kDa (dog) pseudogene pseudo - - - - 20121230 -9606 392063 FDPSP2 - FDPSL2|FDPSL2A|FPSL2 HGNC:3633 7 7q11.23 farnesyl diphosphate synthase pseudogene 2 pseudo FDPSP2 farnesyl diphosphate synthase pseudogene 2 O - 20121230 -9606 392100 PSMC1P3 - - HGNC:39778 7 7q33 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 3 pseudo PSMC1P3 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 3 O - 20121230 -9606 392106 OR9A3P - OR9A6P HGNC:15094 7 7q34 olfactory receptor, family 9, subfamily A, member 3 pseudogene pseudo OR9A3P olfactory receptor, family 9, subfamily A, member 3 pseudogene O - 20121230 -9606 392132 OR2R1P - OR2R1|OST058 HGNC:8274 7 7q35 olfactory receptor, family 2, subfamily R, member 1, pseudogene pseudo OR2R1P olfactory receptor, family 2, subfamily R, member 1, pseudogene O - 20121230 -9606 392133 OR10AC1P - OR10AC1 HGNC:14758 7 7q35 olfactory receptor, family 10, subfamily AC, member 1 pseudogene pseudo OR10AC1P olfactory receptor, family 10, subfamily AC, member 1 pseudogene O - 20121230 -9606 392138 OR2A25 - OR2A24P|OR2A25P|OR2A27 HGNC:19562|Ensembl:ENSG00000221933|HPRD:17691|Vega:OTTHUMG00000158013 7 7q35 olfactory receptor, family 2, subfamily A, member 25 protein-coding OR2A25 olfactory receptor, family 2, subfamily A, member 25 O olfactory receptor 2A25|olfactory receptor 2A27|olfactory receptor, family 2, subfamily A, member 24 pseudogene|olfactory receptor, family 2, subfamily A, member 25 pseudogene|olfactory receptor, family 2, subfamily A, member 27 20121230 -9606 392140 OR2A13P - - HGNC:15083 7 7q35 olfactory receptor, family 2, subfamily A, member 13 pseudogene pseudo OR2A13P olfactory receptor, family 2, subfamily A, member 13 pseudogene O - 20121230 -9606 392145 LOC392145 tcag7.1231 - - 7 7q36.1 exosome component 6 pseudogene pseudo - - - - 20121230 -9606 392180 LOC392180 - - - 8 8p23.2 transcriptional adaptor 1 pseudogene pseudo - - - - 20121230 -9606 392181 LOC392181 - - - 8 8p23.1 ribosomal protein L23a pseudogene pseudo - - - - 20121230 -9606 392187 LOC392187 - - - 8 8p23.1 ubiquitin carboxyl-terminal hydrolase 17-like protein 2-like pseudo - - - - 20121230 -9606 392188 USP17L8 - - HGNC:37181 8 8p23.1 ubiquitin specific peptidase 17-like family member 8 protein-coding USP17L8 ubiquitin specific peptidase 17-like family member 8 O inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 8|ubiquitin specific peptidase 17-like 8 20121230 -9606 392193 RPL19P13 - RPL19_8_875 HGNC:36879 8 8p23.1 ribosomal protein L19 pseudogene 13 pseudo RPL19P13 ribosomal protein L19 pseudogene 13 O - 20121230 -9606 392194 OR7E158P - - HGNC:31232 8 8p23.1 olfactory receptor, family 7, subfamily E, member 158 pseudogene pseudo OR7E158P olfactory receptor, family 7, subfamily E, member 158 pseudogene O - 20121230 -9606 392196 LOC392196 - - - 8 8p23.1 ubiquitin specific peptidase 17-like family member 2 pseudogene pseudo - - - - 20121230 -9606 392197 USP17L7 - - HGNC:37180 8 8p23.1 ubiquitin specific peptidase 17-like family member 7 protein-coding USP17L7 ubiquitin specific peptidase 17-like family member 7 O inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7|ubiquitin specific peptidase 17-like 7 20121230 -9606 392206 RPL10AP11 - RPL10A_4_880 HGNC:35875 8 8p22 ribosomal protein L10a pseudogene 11 pseudo RPL10AP11 ribosomal protein L10a pseudogene 11 O - 20121230 -9606 392209 HSPA8P11 - - HGNC:44926 8 8p12 heat shock 70kDa protein 8 pseudogene 11 pseudo HSPA8P11 heat shock 70kDa protein 8 pseudogene 11 O - 20121230 -9606 392214 KRT18P37 - - HGNC:33406 8 8p11.21 keratin 18 pseudogene 37 pseudo KRT18P37 keratin 18 pseudogene 37 O - 20121230 -9606 392221 CHCHD2P10 - - HGNC:39593 8 8q11.23 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 10 pseudo CHCHD2P10 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 10 O - 20121230 -9606 392225 PDCL3P1 - - HGNC:31826 8 8q12.1 phosducin-like 3 pseudogene 1 pseudo PDCL3P1 phosducin-like 3 pseudogene 1 O - 20121230 -9606 392226 LOC392226 - - - 8 8q12.3 serine/threonine-protein kinase PLK1-like pseudo - - - - 20121230 -9606 392232 LOC392232 - - - 8 8q13.3 transient receptor potential cation channel, subfamily A, member 1 pseudogene pseudo - - - - 20121230 -9606 392242 REXO1L8P - REXO1L8 HGNC:35429 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 8, pseudogene pseudo REXO1L8P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 8, pseudogene O - 20121230 -9606 392255 GDF6 - BMP13|CDMP2|KFM|KFS|KFS1|KFSL|MCOP4|MCOPCB6|SCDO4|SGM1 HGNC:4221|MIM:601147|Ensembl:ENSG00000156466|HPRD:11002|Vega:OTTHUMG00000164710 8 8q22.1 growth differentiation factor 6 protein-coding GDF6 growth differentiation factor 6 O GDF-6|Klip-Feil malformation|Klippel-Feil malformation|Klippel-Feil syndrome|growth/differentiation factor 16|growth/differentiation factor 6 20121230 -9606 392256 RPS26P6 - RPS26_10_933 HGNC:31090 8 8q22.3 ribosomal protein S26 pseudogene 6 pseudo RPS26P6 ribosomal protein S26 pseudogene 6 O - 20121230 -9606 392262 RPSAP48 - RPSA_15_943 HGNC:36646 8 8q23.2 ribosomal protein SA pseudogene 48 pseudo RPSAP48 ribosomal protein SA pseudogene 48 O - 20121230 -9606 392264 LOC392264 - - - 8 8q24.12 zinc finger protein 532 pseudogene pseudo - - - - 20121230 -9606 392265 CDK5PS - - HGNC:21261 8 8q24.13 cyclin-dependent kinase 5 pseudogene pseudo CDK5PS cyclin-dependent kinase 5 pseudogene O - 20121230 -9606 392266 LOC392266 - - - 8 8q24.13 17beta-hydroxysteroid dehydrogenase pseudogene pseudo - - - - 20121230 -9606 392267 IMPDH1P6 - - HGNC:33961 8 8q24.13 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 6 pseudo IMPDH1P6 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 6 O - 20121230 -9606 392268 LOC392268 - - - 8 8q24.13 neuropilin (NRP) and tolloid (TLL)-like 2 pseudogene pseudo - - - - 20121230 -9606 392271 RPL32P20 - RPL32_12_951 HGNC:35934 8 8q24.22 ribosomal protein L32 pseudogene 20 pseudo RPL32P20 ribosomal protein L32 pseudogene 20 O - 20121230 -9606 392275 SMPD5 - - - 8 8q24.3 sphingomyelin phosphodiesterase 5 protein-coding - - - - 20121230 -9606 392281 LOC392281 - - - 9 9p24.2 G protein pathway suppressor 2 pseudogene pseudo - - - - 20121230 -9606 392282 RPS5P6 - RPS5_2_957 HGNC:35960 9 9p24.1 ribosomal protein S5 pseudogene 6 pseudo RPS5P6 ribosomal protein S5 pseudogene 6 O - 20121230 -9606 392285 LOC392285 - - - 9 9p24.1 peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121209 -9606 392288 LOC392288 - - - 9 9p22.1 microtubule-associated proteins 1A/1B light chain 3B-like protein-coding - - - - 20121209 -9606 392292 IFNWP5 RP11-380P16.2 - HGNC:5454 9 9p21.3 interferon, omega 1 pseudogene 5 pseudo IFNWP5 interferon, omega 1 pseudogene 5 O - 20121230 -9606 392298 CTAGE12P - - HGNC:37297 9 9p21.2 CTAGE family, member 12, pseudogene pseudo CTAGE12P CTAGE family, member 12, pseudogene O - 20121230 -9606 392301 SLC25A5P8 RP11-550E18.1 - HGNC:35469 9 9p21.1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 8 pseudo SLC25A5P8 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 8 O - 20121230 -9606 392302 ASS1P12 - ASSP12 HGNC:762 9 9p21.1 argininosuccinate synthetase 1 pseudogene 12 pseudo ASS1P12 argininosuccinate synthetase 1 pseudogene 12 O - 20121230 -9606 392305 GLULP4 - GLULP HGNC:4345 9 9p13.3 glutamate-ammonia ligase (glutamine synthetase) pseudogene 4 pseudo GLULP4 glutamate-ammonia ligase (glutamine synthetase) pseudogene 4 O - 20121230 -9606 392307 FAM221B RP11-112J3.9 C9orf128 HGNC:30762|Ensembl:ENSG00000204930|HPRD:16675|Vega:OTTHUMG00000019880 9 9p13.3 family with sequence similarity 221, member B protein-coding FAM221B family with sequence similarity 221, member B O protein FAM221B|uncharacterized protein C9orf128 20121230 -9606 392308 OR13E1P - OR13E2|OST741 HGNC:15107 9 9p13.3 olfactory receptor, family 13, subfamily E, member 1 pseudogene pseudo OR13E1P olfactory receptor, family 13, subfamily E, member 1 pseudogene O - 20121230 -9606 392309 OR13J1 - OR9-2 HGNC:15108|Ensembl:ENSG00000168828|HPRD:14912|Vega:OTTHUMG00000019879 9 9p13.3 olfactory receptor, family 13, subfamily J, member 1 protein-coding OR13J1 olfactory receptor, family 13, subfamily J, member 1 O olfactory receptor 13J1|olfactory receptor OR9-2 20121230 -9606 392310 PGAM1P2 - - HGNC:42449 9 9p13.3 phosphoglycerate mutase 1 pseudogene 2 pseudo PGAM1P2 phosphoglycerate mutase 1 pseudogene 2 O - 20121230 -9606 392311 OR13C6P - OR37B HGNC:15101 9 9p13.3 olfactory receptor, family 13, subfamily C, member 6 pseudogene pseudo OR13C6P olfactory receptor, family 13, subfamily C, member 6 pseudogene O - 20121230 -9606 392313 OR2S1P - OR37D|OST611 HGNC:8275 9 9p13.3 olfactory receptor, family 2, subfamily S, member 1 pseudogene pseudo OR2S1P olfactory receptor, family 2, subfamily S, member 1 pseudogene O - 20121230 -9606 392322 ATP5A1P8 - - HGNC:37666 9 9p12 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 8 pseudo ATP5A1P8 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 8 O - 20121209 -9606 392334 LOC392334 - - - 9 9p12 calponin 2 pseudogene pseudo - - - - 20121230 -9606 392335 MYO5BP2 - - HGNC:38496 9 9q13 myosin VB pseudogene 2 pseudo MYO5BP2 myosin VB pseudogene 2 O - 20121230 -9606 392343 CNN2P3 - - HGNC:39528 9 9q21.11 calponin 2 pseudogene 3 pseudo CNN2P3 calponin 2 pseudogene 3 O - 20121230 -9606 392350 BTF3P4 RP11-61E5.1 - HGNC:38566 9 9q21.13 basic transcription factor 3 pseudogene 4 pseudo BTF3P4 basic transcription factor 3 pseudogene 4 O - 20121230 -9606 392352 LOC392352 - - - 9 9q21.13 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 392358 RPS6P13 - RPS6_6_992 HGNC:35772 9 9q21.33 ribosomal protein S6 pseudogene 13 pseudo RPS6P13 ribosomal protein S6 pseudogene 13 O - 20121230 -9606 392360 CTSL3 - HCTSL-s HGNC:33132|HPRD:18619 9 9q21.33 cathepsin L family member 3 pseudo CTSL3 cathepsin L family member 3 O - 20121230 -9606 392364 LOC392364 - - - 9 9q22.1 nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 392368 LOC392368 - - - 9 9q22.31 BEN domain containing 3 pseudogene pseudo - - - - 20121230 -9606 392371 KRT18P13 RP11-546O6.3 KRT18L3 HGNC:6432 9 9q22.33 keratin 18 pseudogene 13 pseudo KRT18P13 keratin 18 pseudogene 13 O - 20121230 -9606 392374 GAPDHP26 - - HGNC:37778 9 9q31.1 glyceraldehyde 3 phosphate dehydrogenase pseudogene 26 pseudo GAPDHP26 glyceraldehyde 3 phosphate dehydrogenase pseudogene 26 O - 20121230 -9606 392375 OR13D2P - - HGNC:15105 9 9q31.1 olfactory receptor, family 13, subfamily D, member 2 pseudogene pseudo OR13D2P olfactory receptor, family 13, subfamily D, member 2 pseudogene O - 20121230 -9606 392376 OR13C2 - OR37K HGNC:14701|Ensembl:ENSG00000257019|HPRD:14905|Vega:OTTHUMG00000020415 9 9q31.1 olfactory receptor, family 13, subfamily C, member 2 protein-coding OR13C2 olfactory receptor, family 13, subfamily C, member 2 O olfactory receptor 13C2|olfactory receptor OR9-12 20121230 -9606 392377 OR13C1P - OR37M HGNC:14699 9 9q31.1 olfactory receptor, family 13, subfamily C, member 1 pseudogene pseudo OR13C1P olfactory receptor, family 13, subfamily C, member 1 pseudogene O - 20121230 -9606 392382 RPL31P43 - RPL31_21_1004 HGNC:36512 9 9q31.2 ribosomal protein L31 pseudogene 43 pseudo RPL31P43 ribosomal protein L31 pseudogene 43 O - 20121230 -9606 392387 LOC392387 - - - 9 9q33.2 adenosylhomocysteinase pseudogene pseudo - - - - 20121230 -9606 392390 OR1L6 - HG16|OR1L7|OR9-30 HGNC:8218|Ensembl:ENSG00000171459|HPRD:17688|Vega:OTTHUMG00000020621 9 9q33.2 olfactory receptor, family 1, subfamily L, member 6 protein-coding OR1L6 olfactory receptor, family 1, subfamily L, member 6 O olfactory receptor 1L6|olfactory receptor 1L7|olfactory receptor OR9-30|olfactory receptor, family 1, subfamily L, member 7 20121230 -9606 392391 OR5C1 - OR5C2P|OR9-31|OR9-F HGNC:8331|Ensembl:ENSG00000148215|HPRD:15039|Vega:OTTHUMG00000020622 9 9q33.2 olfactory receptor, family 5, subfamily C, member 1 protein-coding OR5C1 olfactory receptor, family 5, subfamily C, member 1 O hRPK-465_F_21|olfactory receptor 5C1|olfactory receptor 5C2|olfactory receptor 9-F|olfactory receptor, family 5, subfamily C, member 2 pseudogene 20121230 -9606 392392 OR1K1 - hg99 HGNC:8212|Ensembl:ENSG00000165204|HPRD:14919|Vega:OTTHUMG00000020625 9 9q33.2 olfactory receptor, family 1, subfamily K, member 1 protein-coding OR1K1 olfactory receptor, family 1, subfamily K, member 1 O olfactory receptor 1K1 20121230 -9606 392399 LCN9 - 9230102I19Rik HGNC:17442|MIM:612903|Ensembl:ENSG00000148386|HPRD:13979|Vega:OTTHUMG00000020916 9 9q34.3 lipocalin 9 protein-coding LCN9 lipocalin 9 O MUP-like lipocalin|epididymal-specific lipocalin-9 20121230 -9606 392424 RPS5P8 - RPS5_5_1762 HGNC:36531 X Xp22.31 ribosomal protein S5 pseudogene 8 pseudo RPS5P8 ribosomal protein S5 pseudogene 8 O - 20121230 -9606 392425 RPS27AP17 - RPS27A_9_1763 HGNC:36877 X Xp22.31 ribosomal protein S27a pseudogene 17 pseudo RPS27AP17 ribosomal protein S27a pseudogene 17 O - 20121230 -9606 392426 LOC392426 - - - X Xp22.31 nucleolar and coiled-body phosphoprotein 1 pseudogene pseudo - - - - 20121230 -9606 392428 NPM1P9 - - HGNC:7929 X Xp22.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 9 pseudo NPM1P9 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 9 O - 20121230 -9606 392433 MAGEB6P1 - MAGEB6B HGNC:28824 X Xp21.3 melanoma antigen family B, 6 pseudogene 1 pseudo MAGEB6P1 melanoma antigen family B, 6 pseudogene 1 O - 20121230 -9606 392435 LOC392435 - - - X Xp21.3 melanoma antigen family B, 3 pseudogene pseudo - - - - 20121230 -9606 392436 LOC392436 - - - X Xp21.3 melanoma antigen family B, 4 pseudogene pseudo - - - - 20121230 -9606 392437 FTLP2 - FTLL2 HGNC:4001 X Xp21.2 ferritin, light polypeptide pseudogene 2 pseudo FTLP2 ferritin, light polypeptide pseudogene 2 O - 20121230 -9606 392439 LOC392439 - - - X Xp21.1 serine/arginine-rich splicing factor 2 pseudogene pseudo - - - - 20121230 -9606 392440 LOC392440 - - - X Xp21.1 melanoma antigen family B, 18 pseudogene pseudo - - - - 20121230 -9606 392442 LOC392442 - - - X Xp11.4 BCL2-associated athanogene pseudogene pseudo - - - - 20121230 -9606 392447 RPL32P36 hCG_1644323 RPL32_24_1772 HGNC:36613 X Xp11.4 ribosomal protein L32 pseudogene 36 pseudo RPL32P36 ribosomal protein L32 pseudogene 36 O - 20121230 -9606 392451 RPL19P20 - RPL19_12_1775 HGNC:35713 X Xp11.3 ribosomal protein L19 pseudogene 20 pseudo RPL19P20 ribosomal protein L19 pseudogene 20 O - 20121230 -9606 392452 LOC392452 - - - X Xp11.3 mitochondrial fission factor pseudogene pseudo - - - - 20121230 -9606 392454 PCNAP3 - - HGNC:43736 X Xp11.3 proliferating cell nuclear antigen pseudogene 3 pseudo PCNAP3 proliferating cell nuclear antigen pseudogene 3 O - 20121230 -9606 392456 LOC392456 - - - X Xp11.3 catenin, beta like 1 pseudogene pseudo - - - - 20121230 -9606 392459 CXXC1P1 - CXorf25|NCRNA00236 HGNC:27864 X Xp11.23 CXXC finger protein 1 pseudogene 1 pseudo CXXC1P1 CXXC finger protein 1 pseudogene 1 O - 20121230 -9606 392465 GLOD5 - - HGNC:33358|Ensembl:ENSG00000171433|Vega:OTTHUMG00000024125 X Xp11.23 glyoxalase domain containing 5 protein-coding GLOD5 glyoxalase domain containing 5 O glyoxalase domain-containing protein 5 20121230 -9606 392477 LOC392477 - - - X Xp11.21 malate dehydrogenase 1, NAD (soluble) pseudogene pseudo - - - - 20121230 -9606 392479 KRT8P17 RP5-1158B12.1 - HGNC:33369 X Xp11.21 keratin 8 pseudogene 17 pseudo KRT8P17 keratin 8 pseudogene 17 O - 20121230 -9606 392485 LOC392485 - - - X Xq12 ataxin 7-like 3 pseudogene pseudo - - - - 20121230 -9606 392486 GPR165P - PGR15 HGNC:21462 X Xq12 G protein-coupled receptor 165 pseudogene pseudo GPR165P G protein-coupled receptor 165 pseudogene O - 20121230 -9606 392489 LOC392489 - - - X Xq13.1 ras homolog family member G pseudogene pseudo - - - - 20121230 -9606 392490 FLJ44635 - - HPRD:13491 X Xq13.1 TPT1-like protein protein-coding - - - - 20121230 -9606 392497 RPS6P26 - RPS6_11_1786 HGNC:36713 X Xq13.2 ribosomal protein S6 pseudogene 26 pseudo RPS6P26 ribosomal protein S6 pseudogene 26 O - 20121230 -9606 392501 RPL26P36 - RPL26_16_1792 HGNC:36685 X Xq21.32 ribosomal protein L26 pseudogene 36 pseudo RPL26P36 ribosomal protein L26 pseudogene 36 O - 20121230 -9606 392505 RPL6P29 - RPL6_17_1796 HGNC:36382 X Xq21.33 ribosomal protein L6 pseudogene 29 pseudo RPL6P29 ribosomal protein L6 pseudogene 29 O - 20121230 -9606 392508 LOC392508 - - - X Xq22.1 RAD21 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 392509 ARL13A RP3-341D10.2 ARL13|dJ341D10.2 HGNC:31709|Ensembl:ENSG00000174225|HPRD:18526|Vega:OTTHUMG00000022013 X Xq22.1 ADP-ribosylation factor-like 13A protein-coding ARL13A ADP-ribosylation factor-like 13A O ADP-ribosylation factor-like 13|ADP-ribosylation factor-like protein 13A 20121230 -9606 392510 YWHAQP8 - - HGNC:37687 X Xq22.1 YWHAQ pseudogene 8 pseudo YWHAQP8 YWHAQ pseudogene 8 O - 20121230 -9606 392516 KRT18P49 RP1-3D11.1 - HGNC:33419 X Xq22.3 keratin 18 pseudogene 49 pseudo KRT18P49 keratin 18 pseudogene 49 O - 20121230 -9606 392517 NCBP2L - dJ820B18.1 HGNC:31795 X Xq22.3 nuclear cap binding protein subunit 2-like pseudo NCBP2L nuclear cap binding protein subunit 2-like O - 20121230 -9606 392520 RPS5P7 - RPS5_3_1801 HGNC:36881 X Xq23 ribosomal protein S5 pseudogene 7 pseudo RPS5P7 ribosomal protein S5 pseudogene 7 O - 20121230 -9606 392522 RPL18AP15 - RPL18A_4_1802 HGNC:36010 X Xq23 ribosomal protein L18a pseudogene 15 pseudo RPL18AP15 ribosomal protein L18a pseudogene 15 O - 20121230 -9606 392525 AKR1B1P8 - - HGNC:33496 X Xq23 aldo-keto reductase family 1, member B1 pseudogene 8 pseudo AKR1B1P8 aldo-keto reductase family 1, member B1 pseudogene 8 O - 20121230 -9606 392529 LOC392529 - - - X Xq24 cordon-bleu homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 392536 LOC392536 - - - X Xq25 filamin binding LIM protein 1 pseudogene pseudo - - - - 20121230 -9606 392538 LOC392538 - - - X Xq25 RuvB-like 2 (E. coli) pseudogene pseudo - - - - 20121230 -9606 392539 LOC392539 - - - X Xq25 tight junction associated protein 1 pseudogene pseudo - - - - 20121230 -9606 392540 OR11N1P - - HGNC:19582 X Xq26.2 olfactory receptor, family 11, subfamily N, member 1 pseudogene pseudo OR11N1P olfactory receptor, family 11, subfamily N, member 1 pseudogene O - 20121230 -9606 392543 LOC392543 - - - X Xq26.2 acylglycerol kinase pseudogene pseudo - - - - 20121230 -9606 392545 HMGB3P31 - - HGNC:39334 X Xq26.3 high mobility group box 3 pseudogene 31 pseudo HMGB3P31 high mobility group box 3 pseudogene 31 O - 20121230 -9606 392547 CROCCP1 - CROCCP HGNC:33602 X Xq26.3 ciliary rootlet coiled-coil, rootletin pseudogene 1 pseudo CROCCP1 ciliary rootlet coiled-coil, rootletin pseudogene 1 O - 20121230 -9606 392552 KRT8P6 - - HGNC:33360 X Xq26.3 keratin 8 pseudogene 6 pseudo KRT8P6 keratin 8 pseudogene 6 O - 20121230 -9606 392555 LOC392555 - - - X Xq27.2 melanoma antigen family C, 2 pseudogene pseudo - - - - 20121230 -9606 392557 RPL19P21 - RPL19_13_1819 HGNC:35868 X Xq28 ribosomal protein L19 pseudogene 21 pseudo RPL19P21 ribosomal protein L19 pseudogene 21 O - 20121230 -9606 392561 OR3B1P - - HGNC:14839 X Xq28 olfactory receptor, family 3, subfamily B, member 1 pseudogene pseudo OR3B1P olfactory receptor, family 3, subfamily B, member 1 pseudogene O - 20121230 -9606 392597 TRAPPC2P7 - SEDLP7 HGNC:10716 Y Yq11.23 trafficking protein particle complex 2 pseudogene 7 pseudo TRAPPC2P7 trafficking protein particle complex 2 pseudogene 7 O - 20121209 -9606 392603 ZNF736P2Y - ZNF736P2|ZNF736PY2 HGNC:37727 Y Yq11.23 zinc finger protein 736 pseudogene 2, Y-linked pseudo ZNF736P2Y zinc finger protein 736 pseudogene 2, Y-linked O - 20121209 -9606 392617 ELFN1 - PPP1R28 HGNC:33154|MIM:614964|Ensembl:ENSG00000225968 7 7p22.3 extracellular leucine-rich repeat and fibronectin type III domain containing 1 protein-coding ELFN1 extracellular leucine-rich repeat and fibronectin type III domain containing 1 O extracellular leucine-rich repeat and fibronectin type III containing 1|extracellular leucine-rich repeat and fibronectin type-III domain-containing protein 1|protein phosphatase 1 regulatory subunit 28|protein phosphatase 1, regulatory subunit 28 20121230 -9606 392636 AGMO tcag7.1136 TMEM195 HGNC:33784|MIM:613738|Ensembl:ENSG00000187546|HPRD:13362|Vega:OTTHUMG00000152387 7 7p21.2 alkylglycerol monooxygenase protein-coding AGMO alkylglycerol monooxygenase O glyceryl-ether monooxygenase|transmembrane protein 195 20121230 -9606 392713 PMS2P12 - PMS2L12|PMSL12 HGNC:13641 7 7q22.1 postmeiotic segregation increased 2 pseudogene 12 pseudo PMS2P12 postmeiotic segregation increased 2 pseudogene 12 O - 20121230 -9606 392748 RPS27P17 - RPS27_5_819 HGNC:36291 7 7q21.3 ribosomal protein S27 pseudogene 17 pseudo RPS27P17 ribosomal protein S27 pseudogene 17 O - 20121230 -9606 392752 OR7E7P - - HGNC:8457 7 7q21.3 olfactory receptor, family 7, subfamily E, member 7 pseudogene pseudo OR7E7P olfactory receptor, family 7, subfamily E, member 7 pseudogene O - 20121230 -9606 392781 RPS2P31 tcag7.979 RPS2_15_841 HGNC:36965 7 7q31.33 ribosomal protein S2 pseudogene 31 pseudo RPS2P31 ribosomal protein S2 pseudogene 31 O - 20121230 -9606 392787 LOC392787 tcag7.1102 - - 7 7q32.1 filamin C pseudogene pseudo - - - - 20121230 -9606 392843 IQCA1P1 tcag7.1202 IQCA1L|TCAG_9762 HGNC:22831 7 7q36.1 IQ motif containing with AAA domain 1 pseudogene 1 pseudo IQCA1P1 IQ motif containing with AAA domain 1 pseudogene 1 O - 20121230 -9606 392862 GRID2IP tcag7.1041 DELPHILIN HGNC:18464|MIM:610639|Ensembl:ENSG00000215045|Vega:OTTHUMG00000155531 7 7p22.1 glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein protein-coding GRID2IP glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein O delphilin|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1|glutamate receptor, ionotropic, delta 2-interacting protein 1 20121230 -9606 392872 RPL12P10 - RPL12_8_793 HGNC:22583 7 7p15.3 ribosomal protein L12 pseudogene 10 pseudo RPL12P10 ribosomal protein L12 pseudogene 10 O - 20121230 -9606 392979 RPL18P4 tcag7.23 RPL18_1_838 HGNC:36144 7 7q31.31 ribosomal protein L18 pseudogene 4 pseudo RPL18P4 ribosomal protein L18 pseudogene 4 O - 20121230 -9606 393046 OR2A5 - OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 HGNC:8232|Ensembl:ENSG00000221836|HPRD:14932|Vega:OTTHUMG00000158006 7 7q35 olfactory receptor, family 2, subfamily A, member 5 protein-coding OR2A5 olfactory receptor, family 2, subfamily A, member 5 O olfactory receptor 2A26|olfactory receptor 2A5|olfactory receptor 2A8|olfactory receptor 7-138/7-141|olfactory receptor, family 2, subfamily A, member 11 pseudogene|olfactory receptor, family 2, subfamily A, member 26|olfactory receptor, family 2, subfamily A, member 8 20121230 -9606 393076 LOC393076 tcag7.1213 - - 7 7q36.3 uncharacterized LOC393076 unknown - - - - 20121103 -9606 393078 LOC393078 tcag7.1023 - - 7 7q36.3 uncharacterized LOC393078 unknown - - - - 20111025 -9606 393093 MYP4 - - HGNC:32549 7 7q36 myopia 4 (high grade, autosomal dominant) unknown MYP4 myopia 4 (high grade, autosomal dominant) O - 20120622 -9606 394214 COL11A2P - cD0826Q1.1 HGNC:13947 6 6p21 collagen, type XI, alpha 2 pseudogene pseudo COL11A2P collagen, type XI, alpha 2 pseudogene O - 20121230 -9606 394217 FGF7P2 - FGF7L|PRED3 HGNC:17193 21 21q11.2 fibroblast growth factor 7 pseudogene 2 pseudo FGF7P2 fibroblast growth factor 7 pseudogene 2 O - 20121230 -9606 394254 GPR89P RP1-97D16.1 C11H1.2-Lp|SH120P HGNC:13951 6 6p21 G protein-coupled receptor 89 pseudogene pseudo GPR89P G protein-coupled receptor 89 pseudogene O - 20121230 -9606 394255 RPS10P1 - RPS10_7_669|RPS10p|dJ34B20.13 HGNC:13981 6 6p21 ribosomal protein S10 pseudogene 1 pseudo RPS10P1 ribosomal protein S10 pseudogene 1 O - 20121230 -9606 394261 KLHL30-AS1 - C2orf19 HGNC:31018|HPRD:18620 2 2q37.3 KLHL30 antisense RNA 1 unknown KLHL30-AS1 KLHL30 antisense RNA 1 O - 20120816 -9606 394263 MUC21 DAAP-223I5.2 C6orf205|KMQK697|MUC-21|bCX31G15.2 HGNC:21661|Ensembl:ENSG00000204544|HPRD:16665|Vega:OTTHUMG00000031216 6 6p21.32 mucin 21, cell surface associated protein-coding MUC21 mucin 21, cell surface associated O epiglycanin|mucin-21 20121230 -9606 394269 BRCA1P1 - LBRCA1|PsiBRCA1|pseudo-BRCA1 HGNC:28470 17 17q21 BRCA1 pseudogene 1 pseudo BRCA1P1 BRCA1 pseudogene 1 O - 20121230 -9606 399473 SPRED3 - Eve-3|spred-3 HGNC:31041|MIM:609293|Ensembl:ENSG00000188766|Vega:OTTHUMG00000182082 19 19q13 sprouty-related, EVH1 domain containing 3 protein-coding SPRED3 sprouty-related, EVH1 domain containing 3 O sprouty-related, EVH1 domain-containing protein 3 20121230 -9606 399474 TMEM200B - TTMB HGNC:33785|Ensembl:ENSG00000253304|HPRD:13188|Vega:OTTHUMG00000003658 1 1p35 transmembrane protein 200B protein-coding TMEM200B transmembrane protein 200B O transmembrane protein TTMA|two transmembrane B|two transmembrane domain-containing family member B 20121230 -9606 399491 LOC399491 - - - 16 16p13.1 GPS, PLAT and transmembrane domain-containing protein miscRNA - - - - 20121117 -9606 399495 SLC2A3P4 - - HGNC:31076 8 8q21.3 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 4 pseudo SLC2A3P4 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 4 O - 20121230 -9606 399496 SLC2AXP1 - - HGNC:31077 2 2q11.1 solute carrier family 2 (facilitated glucose transporter), pseudogene 1 pseudo SLC2AXP1 solute carrier family 2 (facilitated glucose transporter), pseudogene 1 O - 20121230 -9606 399511 TCEA1P2 - - HGNC:29891 3 3p22 transcription elongation factor A (SII), 1 pseudogene 2 pseudo TCEA1P2 transcription elongation factor A (SII), 1 pseudogene 2 O - 20121230 -9606 399512 SLC25A35 - - HGNC:31921|MIM:610818|Ensembl:ENSG00000125434|HPRD:13444|Vega:OTTHUMG00000178480 17 17p13.1 solute carrier family 25, member 35 protein-coding SLC25A35 solute carrier family 25, member 35 O solute carrier family 25 member 35 20121230 -9606 399516 OTSC7 - - HGNC:31084|MIM:611572 6 6q13-q16.1 otosclerosis 7 unknown OTSC7 otosclerosis 7 O - 20120622 -9606 399520 TIMM8AP1 - DDPP|TIMM8AP HGNC:17802 2 2q24.2 translocase of inner mitochondrial membrane 8 homolog A (yeast) pseudogene 1 pseudo TIMM8AP1 translocase of inner mitochondrial membrane 8 homolog A (yeast) pseudogene 1 O - 20121230 -9606 399564 GLC1H - - HGNC:23256|MIM:611276 2 2p16.3-p15 glaucoma 1, open angle, H (adult-onset) unknown GLC1H glaucoma 1, open angle, H (adult-onset) O - 20120622 -9606 399565 GLC3C - - HGNC:30028|MIM:613085 14 14q24.3-q31.1 glaucoma 3, primary congenital, C unknown GLC3C glaucoma 3, primary congenital, C O - 20120622 -9606 399656 FAM32B - - HGNC:30945 22 22q11.1 family with sequence similarity 32, member B (pseudogene) pseudo FAM32B family with sequence similarity 32, member B (pseudogene) O - 20121230 -9606 399664 MEX3D - MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO HGNC:16734|MIM:611009|Ensembl:ENSG00000181588|HPRD:15254|Vega:OTTHUMG00000150369 19 19p13.3 mex-3 homolog D (C. elegans) protein-coding MEX3D mex-3 homolog D (C. elegans) O RING finger and KH domain-containing protein 1|RING finger protein 193|RNA-binding protein MEX3D|bcl-2 ARE RNA binding protein|ring finger (C3HC4 type) and KH domain containing 1|ring finger and KH domain containing 1 20121230 -9606 399665 FAM102A RP11-203J24.7 C9orf132|EEIG1|SYM-3A|bA203J24.7 HGNC:31419|MIM:610891|Ensembl:ENSG00000167106|HPRD:13262|Vega:OTTHUMG00000020720 9 9q34.11 family with sequence similarity 102, member A protein-coding FAM102A family with sequence similarity 102, member A O C230093N12Rik|early estrogen-induced gene 1 protein|protein FAM102A|sym-3 homolog A 20121230 -9606 399666 ARL2BPP1 - HsT2883 HGNC:17742 18 18q23 ADP-ribosylation factor-like 2 binding protein pseudogene 1 pseudo ARL2BPP1 ADP-ribosylation factor-like 2 binding protein pseudogene 1 O - 20121230 -9606 399668 LINC00086 - NCRNA00086 HGNC:34499|HPRD:14610 X Xq26.3 long intergenic non-protein coding RNA 86 miscRNA LINC00086 long intergenic non-protein coding RNA 86 O - 20121230 -9606 399669 ZNF321P - ZNF321 HGNC:13827|HPRD:14606 19 19q13.41 zinc finger protein 321, pseudogene pseudo ZNF321P zinc finger protein 321, pseudogene O - 20121230 -9606 399670 RPL13AP17 - RPL13A_6_816 HGNC:36167|HPRD:14588 7 7q21.11 ribosomal protein L13a pseudogene 17 pseudo RPL13AP17 ribosomal protein L13a pseudogene 17 O - 20121230 -9606 399671 HEATR4 - - HGNC:16761|Ensembl:ENSG00000187105|HPRD:14657|Vega:OTTHUMG00000171602 14 14q24.3 HEAT repeat containing 4 protein-coding HEATR4 HEAT repeat containing 4 O HEAT repeat-containing protein 4 20121230 -9606 399687 MYO18A - MYSPDZ|SPR210 HGNC:31104|MIM:610067|Ensembl:ENSG00000196535|HPRD:10106|Vega:OTTHUMG00000166360 17 17q11.2 myosin XVIIIA protein-coding MYO18A myosin XVIIIA O MAJN|SP-A receptor subunit SP-R210 alphaS|molecule associated with JAK3 N-terminus|myosin 18A|myosin containing PDZ domain|myosin containing a PDZ domain|myosin-XVIIIa|unconventional myosin-XVIIIa 20121230 -9606 399693 MGC50722 - - HPRD:14668 9 - uncharacterized MGC50722 protein-coding - - - uncharacterized protein LOC399693 20121230 -9606 399694 SHC4 UNQ6438/PRO21364 RaLP|SHCD HGNC:16743|Ensembl:ENSG00000185634|HPRD:15289|Vega:OTTHUMG00000131513 15 15q21.1-q21.2 SHC (Src homology 2 domain containing) family, member 4 protein-coding SHC4 SHC (Src homology 2 domain containing) family, member 4 O SH2 domain protein C4|SHC-transforming protein 4|SHC-transforming protein D|hShcD|rai-like protein|src homology 2 domain-containing-transforming protein C4 20121230 -9606 399697 CTXN2 - - HGNC:31109|Ensembl:ENSG00000233932|Vega:OTTHUMG00000172152 15 15q21.1 cortexin 2 protein-coding CTXN2 cortexin 2 O cortexin-2 20121230 -9606 399706 LINC00200 - C10orf139|NCRNA00200|RP11-529L18.1 HGNC:30974|HPRD:17990 10 10p15.3 long intergenic non-protein coding RNA 200 miscRNA LINC00200 long intergenic non-protein coding RNA 200 O - 20121230 -9606 399708 LINC00701 - - HGNC:44674 10 10p15.3 long intergenic non-protein coding RNA 701 miscRNA LINC00701 long intergenic non-protein coding RNA 701 O - 20121230 -9606 399715 LOC399715 - - - 10 10p15.1 uncharacterized LOC399715 miscRNA - - - - 20121230 -9606 399716 DKFZp667F0711 - - - 10 10p15.1 uncharacterized protein DKFZp667F0711 unknown - - - - 20121230 -9606 399717 GATA3-AS1 - - HGNC:33786|HPRD:13518 10 10p14 GATA3 antisense RNA 1 miscRNA GATA3-AS1 GATA3 antisense RNA 1 O - 20121230 -9606 399726 C10orf114 - bA418C1.3 HGNC:31448|Ensembl:ENSG00000204682|HPRD:16574|Vega:OTTHUMG00000017795 10 10p12.31 chromosome 10 open reading frame 114 protein-coding C10orf114 chromosome 10 open reading frame 114 O putative uncharacterized protein C10orf114 20121230 -9606 399744 LOC399744 - - HPRD:18408 10 10p11.1 uncharacterized LOC399744 miscRNA - - - - 20121230 -9606 399746 ACTR3BP5 - FKSG74 HGNC:38682 10 10p11.1 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 5 pseudo ACTR3BP5 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 5 O - 20121230 -9606 399748 CAP1P2 - - HGNC:31970 10 10q11.21 CAP1 pseudogene 2 pseudo CAP1P2 CAP1 pseudogene 2 O - 20121230 -9606 399753 LOC399753 RP11-144G6.7 - - 10 10q11.22 uncharacterized LOC399753 pseudo - - - - 20121018 -9606 399761 BMS1P5 RP11-508M1.10-001 BMS1LP5 HGNC:23653|Vega:OTTHUMG00000018157 10 10q11.22 BMS1 pseudogene 5 pseudo BMS1P5 BMS1 pseudogene 5 O - 20121230 -9606 399774 PRKRIRP3 - - HGNC:39567 10 10q21.1 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 3 pseudo PRKRIRP3 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 3 O - 20121230 -9606 399783 LOC399783 - - - 10 10q22.3 zinc finger protein 532 pseudogene pseudo - - - - 20121230 -9606 399804 LOC399804 - - - 10 10q24.1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 399806 FLJ41350 - - - 10 10q24.31 uncharacterized LOC399806 miscRNA - - - - 20121230 -9606 399814 C10orf120 RP11-318C4.1 bA318C4.1 HGNC:25707|Ensembl:ENSG00000183559|HPRD:16577|Vega:OTTHUMG00000019187 10 10q26.13 chromosome 10 open reading frame 120 protein-coding C10orf120 chromosome 10 open reading frame 120 O uncharacterized protein C10orf120 20121230 -9606 399815 LOC399815 - - - 10 10q26.13 chromosome 10 open reading frame 88 pseudogene pseudo - - - - 20121230 -9606 399818 METTL10 - C10orf138|Em:AC068896.3 HGNC:33787|Ensembl:ENSG00000203791|HPRD:14216|Vega:OTTHUMG00000019217 10 10q26.13 methyltransferase like 10 protein-coding METTL10 methyltransferase like 10 O methyltransferase-like protein 10 20121230 -9606 399819 FLJ40536 - - - 10 10q26.13 FLJ40536 protein unknown - - - - 20110512 -9606 399821 FLJ37035 - - - 10 10q26.13 uncharacterized LOC399821 miscRNA - - - - 20121230 -9606 399823 FOXI2 - - HGNC:32448|Ensembl:ENSG00000186766|HPRD:13540|Vega:OTTHUMG00000019250 10 10q26.2 forkhead box I2 protein-coding FOXI2 forkhead box I2 O forkhead box protein I2|homolog of mouse Foxi2 20121230 -9606 399827 FLJ46300 - - HPRD:13530 10 10q26.3 FLJ46300 protein miscRNA - - - - 20121230 -9606 399829 LOC399829 - - - 10 10q26.3 uncharacterized LOC399829 miscRNA - - - FLJ43861 protein 20121230 -9606 399832 DKFZp686M1136 - - - 10 10q26.3 uncharacterized LOC399832 protein-coding - - - - 20120508 -9606 399833 SPRNP1 - - HGNC:37819|HPRD:13492 10 10q26.3 shadow of prion protein homolog (zebrafish) pseudogene 1 pseudo SPRNP1 shadow of prion protein homolog (zebrafish) pseudogene 1 O - 20121230 -9606 399839 DUX4L11 XX-2136C48.2 - HGNC:38687 10 10q26.3 double homeobox 4 like 11 pseudo DUX4L11 double homeobox 4 like 11 O - 20121230 -9606 399844 FLJ45445 - - HPRD:13506 19 19p13.3 uncharacterized LOC399844 miscRNA - - - - 20121230 -9606 399851 LOC399851 - - - 11 11p15.5 uncharacterized LOC399851 unknown - - - - 20120710 -9606 399857 OR7E117P - OST716 HGNC:15303 11 11p15.4 olfactory receptor, family 7, subfamily E, member 117 pseudogene pseudo OR7E117P olfactory receptor, family 7, subfamily E, member 117 pseudogene O - 20121230 -9606 399876 NAV2-AS4 - - HGNC:40741 11 11p15.1 NAV2 antisense RNA 4 miscRNA NAV2-AS4 NAV2 antisense RNA 4 O - 20121230 -9606 399879 LINC00610 - C11orf55 HGNC:23262|HPRD:13500 11 11p13 long intergenic non-protein coding RNA 610 other LINC00610 long intergenic non-protein coding RNA 610 O - 20121021 -9606 399881 HNRNPKP3 - - HGNC:42376 11 11p12 heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo HNRNPKP3 heterogeneous nuclear ribonucleoprotein K pseudogene 3 O - 20121230 -9606 399884 LOC399884 - - - 11 11p11.2 uncharacterized LOC399884 protein-coding - - - - 20120508 -9606 399886 FLJ41423 - - HPRD:13453 11 11p11.2 uncharacterized LOC399886 unknown - - - - 20121230 -9606 399888 FAM180B - - HGNC:34451|Ensembl:ENSG00000196666|Vega:OTTHUMG00000167871 11 11p11.2 family with sequence similarity 180, member B protein-coding FAM180B family with sequence similarity 180, member B O hypothetical gene supported by BC065704|protein FAM180B 20121230 -9606 399898 LOC399898 - - HPRD:18409 11 11q12.1 uncharacterized LOC399898 unknown - - - - 20120508 -9606 399900 LOC399900 - - HPRD:18410 11 11q12.3 uncharacterized LOC399900 unknown - - - - 20121230 -9606 399904 LOC399904 - - HPRD:18411 11 11q13.1 uncharacterized LOC399904 unknown - - - - 20120511 -9606 399909 PCNXL3 - - HGNC:18760|Ensembl:ENSG00000197136|Vega:OTTHUMG00000166539 11 11q13.1 pecanex-like 3 (Drosophila) protein-coding PCNXL3 pecanex-like 3 (Drosophila) O pecanex-like protein 3 20121230 -9606 399923 FLJ42102 - - HPRD:13457 11 11q13.4 uncharacterized LOC399923 miscRNA - - - - 20121230 -9606 399937 TRIM51BP - SPRYD5P|SPRYD5P1 HGNC:37145 11 11q14.3 tripartite motif-containing 51B, pseudogene pseudo TRIM51BP tripartite motif-containing 51B, pseudogene O - 20121230 -9606 399939 TRIM49DP - TRIM49D HGNC:43973 11 11q14.3 tripartite motif containing 49D, pseudogene protein-coding TRIM49DP tripartite motif containing 49D, pseudogene O - 20121230 -9606 399940 TRIM51EP - - HGNC:43970 11 11q14.3 tripartite motif-containing 51E, pseudogene pseudo TRIM51EP tripartite motif-containing 51E, pseudogene O - 20121222 -9606 399942 TUBAP2 - - HGNC:14531 11 11q14.3 tubulin, alpha pseudogene 2 pseudo TUBAP2 tubulin, alpha pseudogene 2 O - 20121230 -9606 399947 C11orf87 - LOH11CR1A HGNC:33788|Ensembl:ENSG00000185742|HPRD:14218|Vega:OTTHUMG00000166559 11 11q22.3 chromosome 11 open reading frame 87 protein-coding C11orf87 chromosome 11 open reading frame 87 O uncharacterized protein C11orf87 20121230 -9606 399948 C11orf92 - - HGNC:33789|HPRD:13513 11 11q23.1 chromosome 11 open reading frame 92 miscRNA C11orf92 chromosome 11 open reading frame 92 O - 20121230 -9606 399949 C11orf88 - - HGNC:25061|Ensembl:ENSG00000183644|HPRD:13529|Vega:OTTHUMG00000166720 11 11q23.1 chromosome 11 open reading frame 88 protein-coding C11orf88 chromosome 11 open reading frame 88 O UPF0722 protein C11orf88|hypothetical gene supported by BC039505 20121230 -9606 399950 ST13P10 - - HGNC:38745 11 11q23.1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 10 pseudo ST13P10 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 10 O - 20121230 -9606 399959 MIR100HG - - HGNC:39522 11 11q24.1 mir-100-let-7a-2 cluster host gene (non-protein coding) miscRNA MIR100HG mir-100-let-7a-2 cluster host gene (non-protein coding) O - 20121230 -9606 399965 LOC399965 - - - 11 11q24.2 keratin 18 pseudogene pseudo - - - - 20121230 -9606 399967 PATE2 UNQ3112/PRO10144 C11orf38|PATE-M|UNQ3112 HGNC:32249|Ensembl:ENSG00000196844|HPRD:15617|Vega:OTTHUMG00000165856 11 11q24.2 prostate and testis expressed 2 protein-coding PATE2 prostate and testis expressed 2 O LVLF3112|PATE-like protein M|prostate and testis expressed protein 2|prostate and testis expression M 20121230 -9606 399968 PATE4 - PATE-B HGNC:35427|Ensembl:ENSG00000237353|Vega:OTTHUMG00000165235 11 11q24.2 prostate and testis expressed 4 protein-coding PATE4 prostate and testis expressed 4 O PATE-like protein B|prostate and testis expressed protein 4|prostate and testis expression B 20121230 -9606 399972 FLJ39051 - - - 11 11q24.2 uncharacterized LOC399972 miscRNA - - - - 20121230 -9606 399975 FLJ45950 - - - 11 11q24.3 FLJ45950 protein unknown - - - - 20120710 -9606 399979 SNX19 - CHET8 HGNC:21532|Ensembl:ENSG00000120451|HPRD:18621|Vega:OTTHUMG00000165663 11 11q25 sorting nexin 19 protein-coding SNX19 sorting nexin 19 O sorting nexin-19 20121230 -9606 399988 HSPA8P5 - - HGNC:44920 12 12p13.32 heat shock 70kDa protein 8 pseudogene 5 pseudo HSPA8P5 heat shock 70kDa protein 8 pseudogene 5 O - 20121230 -9606 399990 FLJ44874 - - - 12 12p13.31 FLJ44874 protein unknown - - - - 20120126 -9606 399994 HADHAP2 - - HGNC:38585 12 12p13.31 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit pseudogene 2 pseudo HADHAP2 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit pseudogene 2 O - 20121230 -9606 400002 FLJ46363 - - HPRD:13534 12 12p13.31 uncharacterized FLJ46363 unknown - - - - 20111109 -9606 400011 SUPT16HP - bcm670 HGNC:31388 12 12p12.3 suppressor of Ty 16 homolog (S. cerevisiae) pseudogene pseudo SUPT16HP suppressor of Ty 16 homolog (S. cerevisiae) pseudogene O - 20121230 -9606 400013 TCP1P3 - CCT1-1P|TCP1L3 HGNC:21630 12 12p12.2 t-complex 1 pseudogene 3 pseudo TCP1P3 t-complex 1 pseudogene 3 O - 20121230 -9606 400026 LOC400026 - - - 12 12q12 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene pseudo - - - - 20121230 -9606 400027 LOC400027 - - - 12 12q12 uncharacterized LOC400027 miscRNA - - - - 20121230 -9606 400036 LOC400036 - - - 12 12q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 pseudogene pseudo - - - - 20121230 -9606 400043 LOC400043 - - - 12 12q13.13 uncharacterized LOC400043 miscRNA - - - - 20121230 -9606 400046 FLJ41278 - - - 12 12q14.3 uncharacterized LOC400046 miscRNA - - - - 20121230 -9606 400055 RPL26P32 hCG_26523 RPL26_12_1262 HGNC:36448 12 12q21.31 ribosomal protein L26 pseudogene 32 pseudo RPL26P32 ribosomal protein L26 pseudogene 32 O - 20121230 -9606 400058 MKRN9P - MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 HGNC:7116 12 12q21.32 makorin ring finger protein 9, pseudogene pseudo MKRN9P makorin ring finger protein 9, pseudogene O - 20121230 -9606 400061 LOC400061 - - - 12 12q22 NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 400064 RPS4XP1 - RPS4P1|RPS4X_6_1269 HGNC:32444 12 12q23.1 ribosomal protein S4X pseudogene 1 pseudo RPS4XP1 ribosomal protein S4X pseudogene 1 O - 20121230 -9606 400070 DKFZp686F0839 - - - 12 12q23.3 uncharacterized LOC400070 miscRNA - - - - 20120508 -9606 400073 C12orf76 - - HGNC:33790|Ensembl:ENSG00000174456|HPRD:13443|Vega:OTTHUMG00000169315 12 12q24.11 chromosome 12 open reading frame 76 protein-coding C12orf76 chromosome 12 open reading frame 76 O uncharacterized protein C12orf76 20121230 -9606 400084 LOC400084 - - - 12 12q24.31 uncharacterized LOC400084 miscRNA - - - - 20121230 -9606 400087 FLJ37505 - - - 12 12q24.32 uncharacterized LOC400087 miscRNA - - - - 20121230 -9606 400094 SNX19P2 - - HGNC:38115 13 13q11 sorting nexin 19 pseudogene 2 pseudo SNX19P2 sorting nexin 19 pseudogene 2 O - 20121230 -9606 400099 LOC400099 - - - 13 13q12.11 uncharacterized LOC400099 unknown - - - - 20121017 -9606 400110 ANKRD20A19P - - HGNC:42737|HPRD:13533 13 13q12.12 ankyrin repeat domain 20 family, member A19, pseudogene pseudo ANKRD20A19P ankyrin repeat domain 20 family, member A19, pseudogene O - 20121230 -9606 400120 SERTM1 RP11-16L6.1 C13orf36 HGNC:33792|Ensembl:ENSG00000180440|HPRD:14219|Vega:OTTHUMG00000016735 13 13q13.3 serine-rich and transmembrane domain containing 1 protein-coding SERTM1 serine-rich and transmembrane domain containing 1 O serine-rich and transmembrane domain-containing 1|serine-rich and transmembrane domain-containing protein 1 20121230 -9606 400121 LINC00547 - - HGNC:43682 13 13q13.3 long intergenic non-protein coding RNA 547 miscRNA LINC00547 long intergenic non-protein coding RNA 547 O - 20121230 -9606 400123 LINC00548 - - HGNC:43683 13 13q14.11 long intergenic non-protein coding RNA 548 miscRNA LINC00548 long intergenic non-protein coding RNA 548 O - 20121230 -9606 400126 DGKZP1 - - HGNC:39263 13 13q14.11 diacylglycerol kinase, zeta pseudogene 1 pseudo DGKZP1 diacylglycerol kinase, zeta pseudogene 1 O - 20121230 -9606 400128 LOC400128 - - - 13 13q14.11 uncharacterized LOC400128 miscRNA - - - - 20120508 -9606 400129 SMARCE1P5 RP11-484D5.2 - HGNC:39734 13 13q14.11 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 5 pseudo SMARCE1P5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 5 O - 20121230 -9606 400141 RPSAP53 - RPSA_19_1317 HGNC:36641 13 13q21.32 ribosomal protein SA pseudogene 53 pseudo RPSAP53 ribosomal protein SA pseudogene 53 O - 20121230 -9606 400156 RPS26P47 - RPS26|RPS26L|RPS26_24_1332 HGNC:36368 13 13q32.3 ribosomal protein S26 pseudogene 47 pseudo RPS26P47 ribosomal protein S26 pseudogene 47 O - 20121230 -9606 400165 C13orf35 RP11-88E10.3 - HGNC:33793|Ensembl:ENSG00000197595|HPRD:16926|Vega:OTTHUMG00000056478 13 13q34 chromosome 13 open reading frame 35 protein-coding C13orf35 chromosome 13 open reading frame 35 O putative uncharacterized protein C13orf35 20121230 -9606 400169 DKFZp451A211 - - HPRD:13202 13 13q34 uncharacterized LOC400169 protein-coding - - - - 20121230 -9606 400174 LOC400174 - - - 14 14q11.2 single stranded DNA binding protein 4 pseudogene pseudo - - - - 20121230 -9606 400206 DPPA3P2 - STELLAR HGNC:20417 14 14q13.3 developmental pluripotency associated 3 pseudogene 2 pseudo DPPA3P2 developmental pluripotency associated 3 pseudogene 2 O - 20121230 -9606 400207 FLJ42220 - - - 14 14q13.3 FLJ42220 protein unknown - - - - 20111109 -9606 400208 LINC00517 - C14orf26 HGNC:19831 14 14q21.1 long intergenic non-protein coding RNA 517 unknown LINC00517 long intergenic non-protein coding RNA 517 O - 20121021 -9606 400209 YTHDF2P1 - HGRG8|NY-REN-2|YTHDF2P HGNC:19865 14 14q21.1 YTH domain family, member 2 pseudogene 1 pseudo YTHDF2P1 YTH domain family, member 2 pseudogene 1 O - 20121230 -9606 400212 FLJ45671 - - - 14 14q22.1 uncharacterized LOC400212 miscRNA - - - - 20120508 -9606 400221 FLJ22447 - - - 14 14q23.1 uncharacterized LOC400221 miscRNA - - - - 20121230 -9606 400224 PLEKHD1 - UPF0639 HGNC:20148|Ensembl:ENSG00000175985|Vega:OTTHUMG00000171233 14 14q24.1 pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 protein-coding PLEKHD1 pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 O PH domain-containing family D member 1|UPF0639 protein|pleckstrin homology domain containing, family D (with M protein repeats) member 1|pleckstrin homology domain-containing family D member 1 20121230 -9606 400236 FOXN3-AS1 - - HGNC:44290 14 14q32.11 FOXN3 antisense RNA 1 miscRNA FOXN3-AS1 FOXN3 antisense RNA 1 O - 20121230 -9606 400238 LINC00642 - - HGNC:44293 14 14q32.12 long intergenic non-protein coding RNA 642 miscRNA LINC00642 long intergenic non-protein coding RNA 642 O - 20121230 -9606 400242 DICER1-AS1 - DICER1-AS HGNC:43017|HPRD:13502 14 14q32.13 DICER1 antisense RNA 1 miscRNA DICER1-AS1 DICER1 antisense RNA 1 O - 20121230 -9606 400258 C14orf180 - C14orf77|NRAC HGNC:33795|Ensembl:ENSG00000184601|HPRD:17383|Vega:OTTHUMG00000029806 14 14q32.33 chromosome 14 open reading frame 180 protein-coding C14orf180 chromosome 14 open reading frame 180 O nutritionally-regulated adipose and cardiac-enriched|transmembrane protein C14orf180 20121230 -9606 400322 HERC2P2 - D15F37S3|MN7 HGNC:4870 15 15q11.2 hect domain and RLD 2 pseudogene 2 pseudo HERC2P2 hect domain and RLD 2 pseudogene 2 O - 20121230 -9606 400347 LOC400347 - - - 15 15q13.3 REX4, RNA exonuclease 4 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 400359 C15orf53 - - HGNC:33796|Ensembl:ENSG00000175779|HPRD:13418|Vega:OTTHUMG00000129841 15 15q14 chromosome 15 open reading frame 53 protein-coding C15orf53 chromosome 15 open reading frame 53 O uncharacterized protein C15orf53 20121230 -9606 400360 C15orf54 - - HGNC:33797|Ensembl:ENSG00000175746|HPRD:13437|Vega:OTTHUMG00000129843 15 15q14 chromosome 15 open reading frame 54 protein-coding C15orf54 chromosome 15 open reading frame 54 O putative uncharacterized protein C15orf54 20121230 -9606 400385 RPL5P3 - HsT18216|RPL5_13_1449 HGNC:31034 15 15q23 ribosomal protein L5 pseudogene 3 pseudo RPL5P3 ribosomal protein L5 pseudogene 3 O - 20121230 -9606 400389 RPL12P35 - RPL12_13_1452 HGNC:35969 15 15q23 ribosomal protein L12 pseudogene 35 pseudo RPL12P35 ribosomal protein L12 pseudogene 35 O - 20121230 -9606 400403 DNM1P9 - DNM1DN9|DNM1DN9-1|DNM1DN9@ HGNC:21126 15 15q24.3 DNM1 pseudogene 9 pseudo DNM1P9 DNM1 pseudogene 9 O - 20121230 -9606 400406 LOC400406 - - - 15 15q24.3 ADAM metallopeptidase with thrombospondin type 1 motif, 7 pseudogene pseudo - - - - 20121230 -9606 400410 ST20 - HCCS-1 HGNC:33520|Ensembl:ENSG00000180953|Vega:OTTHUMG00000172078 15 15q25.1 suppressor of tumorigenicity 20 protein-coding ST20 suppressor of tumorigenicity 20 O cervical cancer suppressor-1|human cervical cancer suppressor gene 1 protein|suppressor of tumorigenicity 20 protein 20121230 -9606 400419 LOC400419 - - - 15 15q25.2 ADAM metallopeptidase with thrombospondin type 1 motif, 7 pseudogene pseudo - - - - 20121209 -9606 400433 DNM1P40 - DNM1DN11-5|DNM1DN11.5|DNM1DN11@ HGNC:35190 15 15q25.2 DNM1 pseudogene 40 pseudo DNM1P40 DNM1 pseudogene 40 O - 20121230 -9606 400446 LOC400446 - - - 15 15q26.1 PERP, TP53 apoptosis effector pseudogene pseudo - - - - 20121230 -9606 400451 FAM174B - - HGNC:34339|Ensembl:ENSG00000185442|HPRD:14220|Vega:OTTHUMG00000171744 15 15q26.1 family with sequence similarity 174, member B protein-coding FAM174B family with sequence similarity 174, member B O membrane protein FAM174B 20121230 -9606 400454 UNQ9370 UNQ9370/PRO34162 - HPRD:17131 15 15q26.1 IFMQ9370 unknown - - - - 20121230 -9606 400456 LOC400456 - - - 15 15q26.2 uncharacterized LOC400456 miscRNA - - - - 20121230 -9606 400464 LOC400464 - - HPRD:18413 15 15q26.3 uncharacterized LOC400464 unknown - - - - 20121230 -9606 400499 LOC400499 - - Ensembl:ENSG00000188897|HPRD:18414 16 16p13.13 uncharacterized LOC400499 protein-coding - - - - 20121230 -9606 400500 BCAR4 - - HGNC:22170|MIM:613746 16 16p13.13 breast cancer anti-estrogen resistance 4 (non-protein coding) miscRNA BCAR4 breast cancer anti-estrogen resistance 4 (non-protein coding) O - 20121230 -9606 400506 C16orf88 - 101F10.1|FAM191A HGNC:34404|Ensembl:ENSG00000103550|HPRD:18415|Vega:OTTHUMG00000177249 16 16p12.3 chromosome 16 open reading frame 88 protein-coding C16orf88 chromosome 16 open reading frame 88 O family with sequence similarity 191, member A|protein C16orf88|testis-specific gene 118 protein 20121230 -9606 400508 CRYM-AS1 - NCRNA00169 HGNC:34405 16 16p12.2 CRYM antisense RNA 1 miscRNA CRYM-AS1 CRYM antisense RNA 1 O - 20121230 -9606 400511 FLJ45256 - - HPRD:16985 16 16p12.1 uncharacterized LOC400511 unknown - - - - 20121230 -9606 400512 FLJ21408 - - - 16 16p12.1 uncharacterized LOC400512 miscRNA - - - - 20121230 -9606 400533 FLJ26245 - - - 16 16p11.1 uncharacterized LOC400533 miscRNA - - - - 20121230 -9606 400535 FLJ44674 - - HPRD:13494 16 16q12.1 FLJ44674 protein unknown - - - - 20120511 -9606 400539 FLJ27243 - - - 16 16q21 FLJ27243 protein unknown - - - - 20121230 -9606 400541 LOC400541 - - - 16 16q22.1 uncharacterized LOC400541 miscRNA - - - - 20120909 -9606 400548 LOC400548 - - - 16 16q24.1 uncharacterized LOC400548 miscRNA - - - - 20121230 -9606 400550 FOXF1-AS1 - - HGNC:43894|MIM:614975 16 16q24.1 FOXF1 antisense RNA 1 (head to head) miscRNA FOXF1-AS1 FOXF1 antisense RNA 1 (head to head) O - 20121230 -9606 400553 LOC400553 - - - 16 16q24.2 uncharacterized LOC400553 unknown - - - FLJ44904 protein 20121230 -9606 400555 C16orf85 - - HGNC:33799|HPRD:13509 16 16q24.2 chromosome 16 open reading frame 85 unknown C16orf85 chromosome 16 open reading frame 85 O - 20121021 -9606 400558 LOC400558 - - - 16 16q24.3 uncharacterized LOC400558 miscRNA - - - - 20121230 -9606 400566 C17orf97 - - HGNC:33800|HPRD:18416 17 17p13.3 chromosome 17 open reading frame 97 protein-coding C17orf97 chromosome 17 open reading frame 97 O uncharacterized protein C17orf97 20121230 -9606 400568 LOC400568 - - - 17 17p13.2 uncharacterized LOC400568 unknown - - - - 20120508 -9606 400569 MED11 HSPC296 - HGNC:32687|MIM:612383|Ensembl:ENSG00000161920|HPRD:14709|Vega:OTTHUMG00000177896 17 17p13.2 mediator complex subunit 11 protein-coding MED11 mediator complex subunit 11 O mediator of RNA polymerase II transcription subunit 11|mediator of RNA polymerase II transcription, subunit 11 homolog 20121230 -9606 400576 FLJ45831 - - HPRD:13514 17 17p12 uncharacterized FLJ45831 unknown - - - - 20121230 -9606 400578 KRT16P2 - - HGNC:37807 17 17p11.2 keratin 16 pseudogene 2 pseudo KRT16P2 keratin 16 pseudogene 2 O - 20121230 -9606 400579 FLJ35934 - - HPRD:13421 17 17p11.2 FLJ35934 miscRNA - - - - 20120710 -9606 400581 GRAPL - - HGNC:37240|Ensembl:ENSG00000189152|Vega:OTTHUMG00000059435 17 17p11.2 GRB2-related adaptor protein-like protein-coding GRAPL GRB2-related adaptor protein-like O GRB2-related adapter protein LOC400581|GRB2-related adapter protein-like 20121230 -9606 400590 LOC400590 - - - 17 17q11.2 uncharacterized LOC400590 unknown - - - - 20121230 -9606 400591 C17orf102 - - HGNC:34412|Ensembl:ENSG00000197322|HPRD:16975|Vega:OTTHUMG00000156883 17 17q12 chromosome 17 open reading frame 102 protein-coding C17orf102 chromosome 17 open reading frame 102 O uncharacterized protein C17orf102 20121230 -9606 400593 FLJ43944 - - - 17 17q12 FLJ43944 protein unknown - - - - 20120622 -9606 400604 TOB1-AS1 - - HGNC:44340 17 17q21.33 TOB1 antisense RNA 1 miscRNA TOB1-AS1 TOB1 antisense RNA 1 O - 20121230 -9606 400612 FLJ37448 - - - 17 17q23.3 uncharacterized LOC400612 miscRNA - - - - 20120508 -9606 400617 KCNJ2-AS1 - - HGNC:43720 17 17q24.3 KCNJ2 antisense RNA 1 (head to head) miscRNA KCNJ2-AS1 KCNJ2 antisense RNA 1 (head to head) O - 20121230 -9606 400618 FLJ37644 - - - 17 17q24.3 uncharacterized LOC400618 miscRNA - - - - 20121230 -9606 400619 LINC00511 - - HGNC:43564 17 17q24.3 long intergenic non-protein coding RNA 511 miscRNA LINC00511 long intergenic non-protein coding RNA 511 O - 20121230 -9606 400620 LOC400620 - - - 17 17q25.1 uncharacterized LOC400620 miscRNA - - - - 20121230 -9606 400622 LOC400622 - - - 17 17q25.3 uncharacterized LOC400622 unknown - - - - 20120508 -9606 400624 FLJ45079 - - HPRD:16979 17 17q25.3 FLJ45079 protein miscRNA - - - - 20121230 -9606 400627 FLJ46026 - - HPRD:16999 17 17q25.3 FLJ46026 protein unknown - - - - 20121230 -9606 400629 TEX19 - - HGNC:33802|Ensembl:ENSG00000182459|HPRD:16940|Vega:OTTHUMG00000132857 17 17q25.3 testis expressed 19 protein-coding TEX19 testis expressed 19 O testis-expressed sequence 19 protein 20121230 -9606 400643 LINC00668 - - HGNC:44328 18 18p11.31 long intergenic non-protein coding RNA 668 miscRNA LINC00668 long intergenic non-protein coding RNA 668 O - 20121230 -9606 400644 FLJ44255 - - - 18 18p11.21 uncharacterized LOC400644 miscRNA - - - - 20120508 -9606 400645 RBM22P1 - - HGNC:31466 18 18q11.2-q12.1 RNA binding motif protein 22 pseudogene 1 pseudo RBM22P1 RNA binding motif protein 22 pseudogene 1 O - 20121230 -9606 400649 FLJ44087 - - - 18 18q12.3 uncharacterized LOC400649 miscRNA - - - - 20120508 -9606 400650 TPMTP1 - - HGNC:17490 18 18q21.1 thiopurine S-methyltransferase pseudogene 1 pseudo TPMTP1 thiopurine S-methyltransferase pseudogene 1 O - 20121230 -9606 400652 RPS3AP49 - RPS3A_23_1608 HGNC:36810 18 18q21.32 ribosomal protein S3a pseudogene 49 pseudo RPS3AP49 ribosomal protein S3a pseudogene 49 O - 20121230 -9606 400653 C18orf49 - - HGNC:25977 18 18q21.33 chromosome 18 open reading frame 49 unknown C18orf49 chromosome 18 open reading frame 49 O - 20120622 -9606 400654 LOC400654 - - - 18 18q22.1 uncharacterized LOC400654 miscRNA - - - - 20121230 -9606 400655 LOC400655 - - - 18 18q22.3 uncharacterized LOC400655 miscRNA - - - - 20121230 -9606 400657 LOC400657 - - HPRD:17385 18 18q22.3 uncharacterized LOC400657 miscRNA - - - - 20121230 -9606 400658 FLJ44313 - - HPRD:13489 18 18q23 FLJ44313 protein unknown - - - - 20121230 -9606 400660 LINC00683 - - HGNC:44467 18 18q23 long intergenic non-protein coding RNA 683 miscRNA LINC00683 long intergenic non-protein coding RNA 683 O - 20121230 -9606 400661 FLJ44881 - - HPRD:13497 18 18q23 FLJ44881 unknown - - - - 20121230 -9606 400662 LOC400662 - - - 18 18q23 uncharacterized LOC400662 unknown - - - - 20120508 -9606 400666 FLJ45684 - - HPRD:16989 19 19p13.3 FLJ45684 locus unknown - - - - 20111109 -9606 400668 PRSS57 UNQ782/PRO1599 PRSSL1|UNQ782 HGNC:31397|Ensembl:ENSG00000185198|HPRD:17916|Vega:OTTHUMG00000180662 19 19p13.3 protease, serine, 57 protein-coding PRSS57 protease, serine, 57 O GLGL782|protease, serine-like 1|serine protease 1-like protein 1|serine protease 57 20121230 -9606 400673 VMAC - - HGNC:33803|Ensembl:ENSG00000187650|HPRD:18623|Vega:OTTHUMG00000180618 19 19p13.3 vimentin-type intermediate filament associated coiled-coil protein protein-coding VMAC vimentin-type intermediate filament associated coiled-coil protein O vimentin-type IF-associated coiled-coil protein|vimentin-type intermediate filament-associated coiled-coil protein 20121230 -9606 400680 LOC400680 - - - 19 19p12 uncharacterized LOC400680 miscRNA - - - - 20121230 -9606 400682 LOC400682 - - - 19 19p12 zinc finger protein 100-like protein-coding - - - - 20121230 -9606 400684 LOC400684 - - - 19 19q13.11 uncharacterized LOC400684 miscRNA - - - - 20121230 -9606 400685 LOC400685 - - - 19 19q13.11 uncharacterized LOC400685 miscRNA - - - - 20121230 -9606 400692 LOC400692 - - - 19 19q13.12 uncharacterized LOC400692 unknown - - - - 20121230 -9606 400696 LGALS17A - - HPRD:14221 19 19q13.2 Charcot-Leyden crystal protein pseudogene pseudo - - - - 20121230 -9606 400706 LOC400706 - - - 19 19q13.32 uncharacterized LOC400706 miscRNA - - - - 20121230 -9606 400707 LOC400707 - - HPRD:18417 19 19q13.32 uncharacterized LOC400707 unknown - - - - 20120710 -9606 400709 SIGLEC16 - SIGLECP16|Siglec-P16 HGNC:24851 19 19q13.33 sialic acid binding Ig-like lectin 16 (gene/pseudogene) pseudo SIGLEC16 sialic acid binding Ig-like lectin 16 (gene/pseudogene) O - 20121230 -9606 400710 FLJ26850 - - HPRD:16927 19 19q13.33 FLJ26850 protein miscRNA - - - - 20121230 -9606 400713 ZNF880 - - HGNC:37249|Ensembl:ENSG00000221923|Vega:OTTHUMG00000167972 19 19q13.41 zinc finger protein 880 protein-coding ZNF880 zinc finger protein 880 O zinc finger protein LOC400713 20121230 -9606 400720 ZNF772 - - HGNC:33106|Ensembl:ENSG00000197128|HPRD:18624|Vega:OTTHUMG00000168007 19 19q13.43 zinc finger protein 772 protein-coding ZNF772 zinc finger protein 772 O - 20121230 -9606 400728 FAM87B - - HGNC:32236 1 1p36.33 family with sequence similarity 87, member B unknown FAM87B family with sequence similarity 87, member B O - 20121230 -9606 400735 PRAMEF4 - RP5-845O24.6 HGNC:31971|Ensembl:ENSG00000243073|HPRD:17992|Vega:OTTHUMG00000001987 1 1p36.21 PRAME family member 4 protein-coding PRAMEF4 PRAME family member 4 O - 20121230 -9606 400736 PRAMEF13 RP11-219C24.4 - HGNC:13262|Ensembl:ENSG00000204495|Vega:OTTHUMG00000008034 1 1p36.21 PRAME family member 13 protein-coding PRAMEF13 PRAME family member 13 O - 20121230 -9606 400743 LOC400743 - - - 1 1p36.13 uncharacterized LOC400743 unknown - - - - 20121230 -9606 400745 SH2D5 - - HGNC:28819|Ensembl:ENSG00000189410|Vega:OTTHUMG00000002620 1 1p36.12 SH2 domain containing 5 protein-coding SH2D5 SH2 domain containing 5 O SH2 domain-containing protein 5 20121230 -9606 400746 NCMAP - C1orf130|MP11 HGNC:29332|Ensembl:ENSG00000184454|HPRD:16963|Vega:OTTHUMG00000003317 1 1p36.11 noncompact myelin associated protein protein-coding NCMAP noncompact myelin associated protein O myelin protein of 11 kDa|noncompact myelin-associated protein 20121230 -9606 400748 LOC400748 - - - 1 1p35.2 uncharacterized LOC400748 unknown - - - - 20120508 -9606 400750 LOC400750 - - - 1 1p34.3 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) pseudogene pseudo - - - - 20121230 -9606 400752 LOC400752 hCG_1820661 - - 1 1p34.1 uncharacterized LOC400752 miscRNA - - - - 20121230 -9606 400756 LOC400756 - - - 1 1p31.3 uncharacterized LOC400756 unknown - - - - 20121230 -9606 400757 C1orf141 RP4-547N15.2 - HGNC:32044|Ensembl:ENSG00000203963|HPRD:18418|Vega:OTTHUMG00000009406 1 1p31.3 chromosome 1 open reading frame 141 protein-coding C1orf141 chromosome 1 open reading frame 141 O uncharacterized protein C1orf141 20121230 -9606 400759 GBP1P1 - - HGNC:39561 1 1p22.2 guanylate binding protein 1, interferon-inducible pseudogene 1 pseudo GBP1P1 guanylate binding protein 1, interferon-inducible pseudogene 1 O - 20121230 -9606 400761 FLJ27354 - - - 1 1p22.2 uncharacterized LOC400761 miscRNA - - - - 20121230 -9606 400765 MIR137HG - - HGNC:42871|HPRD:16937 1 1p21.3 MIR137 host gene (non-protein coding) miscRNA MIR137HG MIR137 host gene (non-protein coding) O - 20121230 -9606 400768 LOC400768 - - - 1 1p13.3 uncharacterized LOC400768 unknown - - - - 20121209 -9606 400769 LOC400769 - - - 1 1p13.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 400793 C1orf226 hCG_2036738 - HGNC:34351|Ensembl:ENSG00000239887|Vega:OTTHUMG00000031376 1 1q23.3 chromosome 1 open reading frame 226 protein-coding C1orf226 chromosome 1 open reading frame 226 O uncharacterized protein C1orf226 20121230 -9606 400794 LOC400794 - - - 1 1q23.3-q24.1 uncharacterized LOC400794 miscRNA - - - - 20121230 -9606 400797 LINC00083 - NCRNA00083 HGNC:34521|HPRD:16970 1 1q25.2 long intergenic non-protein coding RNA 83 unknown LINC00083 long intergenic non-protein coding RNA 83 O - 20121230 -9606 400798 C1orf220 RP5-990P15.2 - HGNC:33805|HPRD:13417 1 1q25.2 chromosome 1 open reading frame 220 miscRNA C1orf220 chromosome 1 open reading frame 220 O - 20121230 -9606 400799 FLJ46134 - - - 1 1q25.3 uncharacterized LOC400799 miscRNA - - - - 20121018 -9606 400800 FLJ43585 - - - 1 1q31.3-q32.1 uncharacterized LOC400800 unknown - - - - 20120508 -9606 400804 C1orf140 - - HPRD:17386 1 1q41 uncharacterized LOC400804 miscRNA - - - - 20121230 -9606 400812 FLJ39095 - - - 1 1q44 uncharacterized LOC400812 unknown - - - - 20120508 -9606 400818 NBPF9 RP11-89F3.1 AE01|NBPF10 HGNC:31991|MIM:613999|Ensembl:ENSG00000168614|Vega:OTTHUMG00000013845 1 1q21.1 neuroblastoma breakpoint family, member 9 protein-coding NBPF9 neuroblastoma breakpoint family, member 9 O neuroblastoma breakpoint family, member 10|uncharacterized protein LOC400818 20121230 -9606 400823 FAM177B RP11-452F19.2 - HGNC:34395|Ensembl:ENSG00000197520|HPRD:16965|Vega:OTTHUMG00000037766 1 1q41 family with sequence similarity 177, member B protein-coding FAM177B family with sequence similarity 177, member B O protein FAM177B 20121230 -9606 400830 DEFB132 RP5-1103G7.1 DEFB32|UNQ827 HGNC:33806|Ensembl:ENSG00000186458|HPRD:16792|Vega:OTTHUMG00000043061 20 20p13 defensin, beta 132 protein-coding DEFB132 defensin, beta 132 O BD-32|DEFB-32|KFLL827|RP5-1103G7.6|beta-defensin 132|beta-defensin 32|defensin HEL-75|defensin, beta 32 20121230 -9606 400831 C20orf202 - - HGNC:37254|Ensembl:ENSG00000215595|HPRD:17387|Vega:OTTHUMG00000129375 20 20p13 chromosome 20 open reading frame 202 protein-coding C20orf202 chromosome 20 open reading frame 202 O uncharacterized protein C20orf202 20121230 -9606 400836 SDAD1P2 - - HGNC:31404 20 20p12.2 SDA1 domain containing 1 pseudogene 2 pseudo SDAD1P2 SDA1 domain containing 1 pseudogene 2 O - 20121230 -9606 400839 FLJ33581 - - - 20 20p11.21 uncharacterized LOC400839 miscRNA - - - - 20121230 -9606 400841 FLJ45832 - - HPRD:16992 20 20q11.1 FLJ45832 protein unknown - - - - 20121230 -9606 400850 FLJ44790 - - HPRD:16974 20 20q13.33 uncharacterized FLJ44790 unknown - - - - 20121230 -9606 400860 FLJ42200 - - HPRD:16958 21 21q21.2 FLJ42200 protein other - - - - 20121017 -9606 400863 LINC00650 - - HGNC:44306|HPRD:13519 21 21q22.11 long intergenic non-protein coding RNA 650 unknown LINC00650 long intergenic non-protein coding RNA 650 O - 20121230 -9606 400866 LINC00114 - C21orf24|NCRNA00114 HGNC:1265|MIM:611723|HPRD:10744 21 21q22.2 long intergenic non-protein coding RNA 114 miscRNA LINC00114 long intergenic non-protein coding RNA 114 O - 20121230 -9606 400867 FLJ45139 - - HPRD:16980 21 21q22.2 FLJ45139 protein unknown - - - - 20121230 -9606 400870 FLJ41733 - - HPRD:16955 21 21q22.3 FLJ41733 protein unknown - - - - 20121230 -9606 400879 LOC400879 - - - 22 22q11.1 uncharacterized LOC400879 unknown - - - - 20121209 -9606 400891 LOC400891 - - HPRD:18419 22 22q11.21 chromosome 14 open reading frame 166B pseudogene pseudo - - - - 20121230 -9606 400892 BCRP2 - BCR-2|BCR2|BCRL2 HGNC:1015|MIM:113630|HPRD:13467 22 22q11.21 breakpoint cluster region pseudogene 2 pseudo BCRP2 breakpoint cluster region pseudogene 2 O - 20121230 -9606 400916 CHCHD10 - C22orf16|N27C7-4 HGNC:15559|Ensembl:ENSG00000250479|HPRD:12797|Vega:OTTHUMG00000150736 22 22q11.23 coiled-coil-helix-coiled-coil-helix domain containing 10 protein-coding CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 O coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial|protein N27C7-4 20121230 -9606 400926 FLJ90680 - - HPRD:13543 22 22q12.3 FLJ90680 protein unknown - - - - 20120511 -9606 400927 LOC400927 - - - 22 22q13.1 TPTE and PTEN homologous inositol lipid phosphatase pseudogene pseudo - - - hypothetical protein LOC400927 20121230 -9606 400930 DKFZp547B139 - - - 22 22q13.31 uncharacterized protein DKFZp547B139 protein-coding - - - uncharacterized protein LOC400930 20111025 -9606 400931 MIRLET7BHG RP4-695O20__B.10-001 RP4-695O20__B.10 HGNC:37189|HPRD:16929 22 22q13.31 MIRLET7B host gene (non-protein coding) miscRNA MIRLET7BHG MIRLET7B host gene (non-protein coding) O - 20121230 -9606 400932 FLJ46257 RP11-191L9.1 - HPRD:17000 22 22q13.31 uncharacterized LOC400932 miscRNA - - - - 20121230 -9606 400934 FLJ44385 - - HPRD:13490 22 22q13.33 uncharacterized FLJ44385 unknown - - - - 20120809 -9606 400935 IL17REL RP3-355C18.6 - HGNC:33808|MIM:613414|Ensembl:ENSG00000188263|HPRD:13456|Vega:OTTHUMG00000150242 22 22q13.33 interleukin 17 receptor E-like protein-coding IL17REL interleukin 17 receptor E-like O IL-17 receptor E-like|IL-17RE-like|putative interleukin-17 receptor E-like 20121230 -9606 400940 LOC400940 - - HPRD:16952 2 2p25.2 uncharacterized LOC400940 miscRNA - - - - 20121230 -9606 400941 LINC00487 - - HGNC:42947|HPRD:13462 2 2p25.2 long intergenic non-protein coding RNA 487 miscRNA LINC00487 long intergenic non-protein coding RNA 487 O - 20121230 -9606 400943 LOC400943 UNQ5830/PRO19650/PRO19816 - HPRD:15618 2 2p25.1 uncharacterized LOC400943 unknown - - - - 20120511 -9606 400945 FLJ41481 - - - 2 2p24.2 uncharacterized LOC400945 unknown - - - - 20120511 -9606 400946 FLJ12334 - - - 2 2p24.1 uncharacterized LOC400946 miscRNA - - - - 20121230 -9606 400949 FKSG49 - FKSG52|FKSG55|FKSG56|FKSG57|FKSG60|FKSG61|FKSG64|FKSG65|FKSG66|FKSG67|FKSG68|FKSG70 - 5 5q13.3 FKSG49 other - - - - 20121018 -9606 400950 C2orf91 - - HGNC:42966|Ensembl:ENSG00000205086|Vega:OTTHUMG00000152307 2 2p21 chromosome 2 open reading frame 91 protein-coding C2orf91 chromosome 2 open reading frame 91 O uncharacterized protein C2orf91 20121230 -9606 400952 UNQ6975 UNQ6975/PRO21958 - - 2 2p21 putative uncharacterized protein UNQ6975/PRO21958 miscRNA - - - - 20121230 -9606 400954 EML6 - - HGNC:35412|Ensembl:ENSG00000214595|Vega:OTTHUMG00000152035 2 2p16.1 echinoderm microtubule associated protein like 6 protein-coding EML6 echinoderm microtubule associated protein like 6 O EMAP-6|echinoderm microtubule-associated protein-like 6 20121230 -9606 400955 FLJ30838 - - - 2 2p16.1 uncharacterized LOC400955 miscRNA - - - - 20121230 -9606 400957 FLJ16341 - - - 2 2p16.1 uncharacterized LOC400957 miscRNA - - - - 20121230 -9606 400958 LOC400958 - - - 2 2p14 uncharacterized LOC400958 miscRNA - - - - 20121230 -9606 400960 PCBP1-AS1 - - HGNC:42948 2 2p14 PCBP1 antisense RNA 1 miscRNA PCBP1-AS1 PCBP1 antisense RNA 1 O - 20121230 -9606 400961 PAIP2B - - HGNC:29200|MIM:611018|Ensembl:ENSG00000124374|Vega:OTTHUMG00000153284 2 2p13.3 poly(A) binding protein interacting protein 2B protein-coding PAIP2B poly(A) binding protein interacting protein 2B O PABP-interacting protein 2B|PAIP-2B|poly(A)-binding protein-interacting protein 2B|polyadenylate-binding protein-interacting protein 2B 20121230 -9606 400963 RPS2P17 - RPS2_6_247 HGNC:35764 2 2p11.2 ribosomal protein S2 pseudogene 17 pseudo RPS2P17 ribosomal protein S2 pseudogene 17 O - 20121230 -9606 400965 LOC400965 - - HPRD:18421 2 2p11.2 uncharacterized LOC400965 unknown - - - - 20120511 -9606 400966 RGPD1 - RGP1|RGPD2|RanBP2L2 HGNC:32414|MIM:612704|Ensembl:ENSG00000187627|Vega:OTTHUMG00000153248 2 2p11.2 RANBP2-like and GRIP domain containing 1 protein-coding RGPD1 RANBP2-like and GRIP domain containing 1 O RANBP2-like and GRIP domain-containing protein 1|RANBP2-like and GRIP domain-containing protein 1/2|ran-binding protein 2-like 2/6|ran-binding protein 2-like 6|ranBP2-like 2/6|ranBP2-like 6|ranBP2L6 20121230 -9606 400968 LOC400968 - - HPRD:18422 15 15q11.2 uncharacterized LOC400968 unknown - - - - 20120511 -9606 400984 OR7E102P - OR7E102 HGNC:15043 2 2q11.1 olfactory receptor, family 7, subfamily E, member 102 pseudogene pseudo OR7E102P olfactory receptor, family 7, subfamily E, member 102 pseudogene O - 20121230 -9606 400986 ANKRD36C - - HGNC:32946|Ensembl:ENSG00000174501|HPRD:17388|Vega:OTTHUMG00000155211 2 2q11.1 ankyrin repeat domain 36C protein-coding ANKRD36C ankyrin repeat domain 36C O ankyrin repeat domain-containing protein 36C|protein immuno-reactive with anti-PTH polyclonal antibodies 20121230 -9606 400997 FLJ44006 - - HPRD:16971 2 2q13 uncharacterized FLJ44006 unknown - - - - 20121230 -9606 400999 FLJ42351 - - - 2 2q13 uncharacterized LOC400999 miscRNA - - - - 20121230 -9606 401002 LOC401002 - - - 2 2q21.1 single stranded DNA binding protein 3 pseudogene pseudo - - - - 20121230 -9606 401007 NF1P8 - NF1L2 HGNC:7767 2 2q21.1 neurofibromin 1 pseudogene 8 pseudo NF1P8 neurofibromin 1 pseudogene 8 O - 20121230 -9606 401010 LOC401010 - - - 2 2q21.1 nucleolar complex associated 2 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 401014 DKFZp686O1327 - - - 2 2q22.3 uncharacterized LOC401014 miscRNA - - - - 20121230 -9606 401018 CTAGE14P - - HGNC:37299 2 2q24.3 CTAGE family, member 14, pseudogene pseudo CTAGE14P CTAGE family, member 14, pseudogene O - 20121230 -9606 401019 RPS15P4 hCG_1783417 RPS15_2_291 HGNC:35712 2 2q31.1 ribosomal protein S15 pseudogene 4 pseudo RPS15P4 ribosomal protein S15 pseudogene 4 O - 20121230 -9606 401021 LOC401021 - - - 2 2q31.1 uncharacterized LOC401021 miscRNA - - - - 20120511 -9606 401022 HOXD-AS1 - - HGNC:43755 2 2q31.2 HOXD cluster antisense RNA 1 miscRNA HOXD-AS1 HOXD cluster antisense RNA 1 O - 20121230 -9606 401024 FSIP2 hCG_1799183 - HGNC:21675|Ensembl:ENSG00000188738|HPRD:13483|Vega:OTTHUMG00000153874 2 2q32.1 fibrous sheath interacting protein 2 protein-coding FSIP2 fibrous sheath interacting protein 2 O fibrous sheath-interacting protein 2 20121230 -9606 401027 C2orf66 UNQ6411/PRO21186 UNQ6411 HGNC:33809|Ensembl:ENSG00000187944|HPRD:13734|Vega:OTTHUMG00000132742 2 2q33.1 chromosome 2 open reading frame 66 protein-coding C2orf66 chromosome 2 open reading frame 66 O IIDS6411|hypothetical protein LOC401027|uncharacterized protein C2orf66 20121230 -9606 401036 ASB18 - ASB-18 HGNC:19770|Ensembl:ENSG00000182177|HPRD:16514|Vega:OTTHUMG00000153086 2 2q37.2 ankyrin repeat and SOCS box containing 18 protein-coding ASB18 ankyrin repeat and SOCS box containing 18 O ankyrin repeat and SOCS box protein 18|ankyrin repeat and SOCS box-containing 18 20121230 -9606 401037 LOC401037 - - - 2 2q37.3 uncharacterized LOC401037 unknown - - - - 20120508 -9606 401039 FLJ43879 - - HPRD:16969 2 2q37.3 FLJ43879 protein miscRNA - - - - 20121230 -9606 401040 FLJ45964 - - HPRD:16995 2 2q37.3 uncharacterized FLJ45964 unknown - - - - 20121230 -9606 401044 FLJ40712 - - HPRD:10990 2 2q37.3 FLJ40712 protein unknown - - - - 20120511 -9606 401045 FLJ41327 - - HPRD:16953 2 2q37.3 FLJ41327 protein unknown - - - - 20120511 -9606 401052 LOC401052 - - HPRD:17389 3 3p25.3 uncharacterized LOC401052 protein-coding - - - uncharacterized protein LOC401052 20121230 -9606 401067 IQCF3 - - HGNC:31816|Ensembl:ENSG00000229972|Vega:OTTHUMG00000156910 3 3p21.2 IQ motif containing F3 protein-coding IQCF3 IQ motif containing F3 O IQ domain-containing protein F3 20121230 -9606 401068 LOC401068 - - - 3 3p21.1 uncharacterized LOC401068 unknown - - - - 20121230 -9606 401074 LOC401074 - - - 3 3p12.3 uncharacterized LOC401074 miscRNA - - - - 20121230 -9606 401076 CAP1P1 - - HGNC:31134 3 3p12.3 CAP1 pseudogene 1 pseudo CAP1P1 CAP1 pseudogene 1 O - 20121230 -9606 401081 FLJ22763 - - - 3 3q13.13 uncharacterized LOC401081 miscRNA - - - - 20121230 -9606 401082 FLJ25363 - - - 3 3q13.13 uncharacterized LOC401082 protein-coding - - - uncharacterized protein LOC401082 20121230 -9606 401089 C3orf72 - - HGNC:34428|Ensembl:ENSG00000206262|Vega:OTTHUMG00000159886 3 3q22.3 chromosome 3 open reading frame 72 protein-coding C3orf72 chromosome 3 open reading frame 72 O FLJ43329 protein|uncharacterized protein C3orf72 20121230 -9606 401093 MBNL1-AS1 hCG_1806964 - HGNC:44584 3 3q25.1 MBNL1 antisense RNA 1 miscRNA MBNL1-AS1 MBNL1 antisense RNA 1 O - 20121230 -9606 401097 C3orf80 hCG_2022062 - HGNC:40048|Ensembl:ENSG00000180044 3 3q25.33 chromosome 3 open reading frame 80 protein-coding C3orf80 chromosome 3 open reading frame 80 O uncharacterized membrane protein C3orf80 20121230 -9606 401098 LOC401098 - - - 3 3q25.33 uncharacterized LOC401098 unknown - - - - 20120511 -9606 401103 FLJ46066 - - - 3 3q26.33 uncharacterized LOC401103 miscRNA - - - - 20121230 -9606 401105 FLJ42393 UNQ1948 AVPC1948 HPRD:16962 3 3q27.3 uncharacterized LOC401105 miscRNA - - - - 20121230 -9606 401106 FLJ34208 - - - 3 3q29 uncharacterized LOC401106 miscRNA - - - - 20121230 -9606 401109 LOC401109 - - HPRD:16924 3 3q29 uncharacterized LOC401109 miscRNA - - - - 20121230 -9606 401113 FLJ41130 - - - 4 4p16.3 uncharacterized LOC401113 unknown - - - - 20120508 -9606 401114 FLJ35816 - - HPRD:16941 4 4p16.3 FLJ35816 protein unknown - - - - 20121230 -9606 401115 C4orf48 Chr4_55 CHR4_55 HGNC:34437|MIM:614690|Ensembl:ENSG00000243449|Vega:OTTHUMG00000154503 4 4p16.3 chromosome 4 open reading frame 48 protein-coding C4orf48 chromosome 4 open reading frame 48 O neuropeptide-like protein C4orf48 20121230 -9606 401123 FLJ45721 - - HPRD:13512 4 4p15.2 uncharacterized LOC401123 unknown - - - - 20120511 -9606 401124 DTHD1 - - HGNC:37261|Ensembl:ENSG00000197057|Vega:OTTHUMG00000160371 4 4p14 death domain containing 1 protein-coding DTHD1 death domain containing 1 O death domain-containing protein 1 20121230 -9606 401127 LOC401127 - - - 4 4p14 WD repeat domain 5 pseudogene pseudo - - - - 20121230 -9606 401131 LOC401131 - - - 1 1q12 uncharacterized LOC401131 unknown - - - - 20111025 -9606 401134 LOC401134 - - - 4 4q13.1 uncharacterized LOC401134 miscRNA - - - - 20121230 -9606 401135 SYT14L - CHR415SYT|SYTDEP HGNC:33429|MIM:610892|HPRD:18501 4 4q13.2 synaptotagmin XIV-like pseudo SYT14L synaptotagmin XIV-like O - 20121230 -9606 401136 TMPRSS11BNL - - HGNC:37262|Ensembl:ENSG00000226894 4 4q13.2 TMPRSS11B N terminal-like protein-coding TMPRSS11BNL TMPRSS11B N terminal-like O TMPRSS11B N-terminus-like protein|transmembrane protease serine 11B-like protein 20121230 -9606 401137 C4orf40 - - HGNC:33193|Ensembl:ENSG00000187533|HPRD:14222|Vega:OTTHUMG00000129402 4 4q13.3 chromosome 4 open reading frame 40 protein-coding C4orf40 chromosome 4 open reading frame 40 O uncharacterized protein C4orf40 20121230 -9606 401138 AMTN UNQ689/PRO1329 UNQ689 HGNC:33188|MIM:610912|Ensembl:ENSG00000187689|HPRD:18270|Vega:OTTHUMG00000129906 4 4q13.3 amelotin protein-coding AMTN amelotin O RSTI689 20121230 -9606 401145 CCSER1 - FAM190A HGNC:29349|Ensembl:ENSG00000184305|HPRD:17561|Vega:OTTHUMG00000160950 4 4q22.1 coiled-coil serine-rich protein 1 protein-coding CCSER1 coiled-coil serine-rich protein 1 O family with sequence similarity 190, member A|protein FAM190A 20121230 -9606 401149 FLJ14186 - - - 4 4q26 uncharacterized LOC401149 miscRNA - - - - 20121230 -9606 401152 C4orf3 - - HGNC:19225|Ensembl:ENSG00000164096|HPRD:14223|Vega:OTTHUMG00000161333 4 4q26 chromosome 4 open reading frame 3 protein-coding C4orf3 chromosome 4 open reading frame 3 O HCV F-transactivated protein 1|hepatitis C virus F protein-transactivated protein 1|uncharacterized protein C4orf3 20121230 -9606 401157 FLJ44477 - - - 4 4q31.21 FLJ44477 protein unknown - - - - 20120511 -9606 401164 LOC401164 - - - 4 4q35.2 uncharacterized LOC401164 miscRNA - - - - 20121230 -9606 401166 FLJ44896 - - - 5 5p15.33 FLJ44896 protein unknown - - - - 20120511 -9606 401172 FLJ33360 - - HPRD:16934 5 5p15.31 FLJ33360 protein miscRNA - - - - 20121230 -9606 401176 LOC401176 - - - 5 5p15.1 uncharacterized LOC401176 unknown - - - - 20121230 -9606 401177 LOC401177 - - - 5 5p15.1 uncharacterized LOC401177 miscRNA - - - - 20121230 -9606 401180 LOC401180 - - - 5 5p13.2 uncharacterized LOC401180 protein-coding - - - - 20121209 -9606 401188 LOC401188 - - - 5 5q11.2 uncharacterized LOC401188 unknown - - - - 20120508 -9606 401190 RGS7BP - R7BP HGNC:23271|MIM:610890|Ensembl:ENSG00000186479|Vega:OTTHUMG00000162293 5 5q12.3 regulator of G-protein signaling 7 binding protein protein-coding RGS7BP regulator of G-protein signaling 7 binding protein O R7 family-binding protein|regulator of G-protein signaling 7-binding protein 20121230 -9606 401191 FLJ46010 - - HPRD:16998 5 5q12.3 FLJ46010 protein unknown - - - - 20120909 -9606 401206 RPS25P6 hCG_1640785 RPS25_4_602 HGNC:35532 5 5q23.1 ribosomal protein S25 pseudogene 6 pseudo RPS25P6 ribosomal protein S25 pseudogene 6 O - 20121230 -9606 401207 C5orf63 - YDR286C HGNC:40051|Ensembl:ENSG00000164241 5 5q23.2 chromosome 5 open reading frame 63 protein-coding C5orf63 chromosome 5 open reading frame 63 O glutaredoxin-like protein C5orf63|glutaredoxin-like protein YDR286C homolog 20121230 -9606 401209 FLJ44796 - - HPRD:13496 5 5q31.1 uncharacterized FLJ44796 other - - - - 20120622 -9606 401218 LOC401218 - - - 5 5q35.1 family with sequence similarity 58, member A pseudogene pseudo - - - - 20121230 -9606 401220 LOC401220 - - - 5 5q35.3 uncharacterized LOC401220 unknown - - - - 20120511 -9606 401225 FLJ31183 - - - 5 5q35.3 uncharacterized LOC401225 unknown - - - - 20120508 -9606 401230 FLJ46552 - - - 6 6p25.3 FLJ46552 protein unknown - - - - 20120511 -9606 401232 DKFZP686I15217 - - HPRD:16819 6 6p25.2 uncharacterized LOC401232 miscRNA - - - - 20121230 -9606 401233 HTATSF1P2 - - HGNC:38586|HPRD:18424 6 6p25.2 HIV-1 Tat specific factor 1 pseudogene 2 pseudo HTATSF1P2 HIV-1 Tat specific factor 1 pseudogene 2 O - 20121230 -9606 401236 STMND1 - - HGNC:44668|Ensembl:ENSG00000230873|Vega:OTTHUMG00000014304 6 6p22.3 stathmin domain containing 1 protein-coding STMND1 stathmin domain containing 1 O uncharacterized protein LOC401236 20121230 -9606 401237 LINC00340 - - HGNC:28245 6 6p22.3 long intergenic non-protein coding RNA 340 miscRNA LINC00340 long intergenic non-protein coding RNA 340 O - 20121230 -9606 401242 LOC401242 - - - 6 6p22.1 uncharacterized LOC401242 miscRNA - - - - 20121230 -9606 401247 LINC00243 - C6orf214|NCRNA00243|bQB10J12.2|bQB230F21.2 HGNC:30956 6 6p21.33 long intergenic non-protein coding RNA 243 miscRNA LINC00243 long intergenic non-protein coding RNA 243 O - 20121230 -9606 401250 MCCD1 DAAP-97M17.2 - HGNC:20668|MIM:609624|Ensembl:ENSG00000204511|HPRD:17470|Vega:OTTHUMG00000134292 6 6p21.33 mitochondrial coiled-coil domain 1 protein-coding MCCD1 mitochondrial coiled-coil domain 1 O mitochondrial coiled-coil domain protein 1 20121230 -9606 401251 SAPCD1 DAAP-21F2.3 C6orf26|NG23 HGNC:13938|Ensembl:ENSG00000228727|Vega:OTTHUMG00000031131 6 6p21.33 suppressor APC domain containing 1 protein-coding SAPCD1 suppressor APC domain containing 1 O protein G7d|suppressor APC domain-containing protein 1 20121230 -9606 401253 LINC00336 - C6orf227|NCRNA00336 HGNC:33813|HPRD:16966 6 6p21.31 long intergenic non-protein coding RNA 336 miscRNA LINC00336 long intergenic non-protein coding RNA 336 O - 20121230 -9606 401258 RAB44 RP3-431A14.3 RASD3|RASL13|dJ431A14.3 HGNC:21068|HPRD:13470 6 6p21.31-p21.2 RAB44, member RAS oncogene family protein-coding RAB44 RAB44, member RAS oncogene family O RAS-like, family 13|RASD family, member 3|ras-related protein Rab-44 20121230 -9606 401260 FLJ41649 - - HPRD:16954 6 6p21.2 uncharacterized LOC401260 miscRNA - - - - 20121230 -9606 401261 FLJ38717 - - HPRD:16945 6 6p21.1 FLJ38717 protein unknown - - - - 20121230 -9606 401262 CRIP3 RP11-480N24.2 TLP|TLP-A|bA480N24.2 HGNC:17751|Ensembl:ENSG00000146215|HPRD:16755|Vega:OTTHUMG00000014727 6 6p21.1 cysteine-rich protein 3 protein-coding CRIP3 cysteine-rich protein 3 O CRP-3|chromosome 6 LIM domain only protein|h6LIMo|thymus LIM protein TLP-A 20121230 -9606 401264 FLJ37798 - - - 6 6p12.3 uncharacterized LOC401264 miscRNA - - - - 20121230 -9606 401265 KLHL31 - BKLHD6|KBTBD1|KLHL|bA345L23.2 HGNC:21353|MIM:610749|Ensembl:ENSG00000124743|HPRD:13923 6 6p12.1 kelch-like 31 (Drosophila) protein-coding KLHL31 kelch-like 31 (Drosophila) O BTB and kelch domain-containing protein 6|kelch repeat and BTB (POZ) domain containing 1|kelch repeat and BTB domain-containing protein 1|kelch-like protein 31|kelch-like protein KLHL 20121230 -9606 401281 FLJ27255 - - HPRD:16928 6 6q25.3 uncharacterized LOC401281 unknown - - - - 20121230 -9606 401282 DKFZp451B082 - - - 6 6q26 uncharacterized LOC401282 miscRNA - - - - 20121230 -9606 401285 TCP10L2 RP11-517H2.3 bA517H2.3 HGNC:21254|Ensembl:ENSG00000166984|HPRD:18427|Vega:OTTHUMG00000016014 6 6q27 t-complex 10-like 2 protein-coding TCP10L2 t-complex 10-like 2 O T-complex 10-like protein 2|putative t-complex protein 10A homolog 2 20121230 -9606 401286 LOC401286 - - HPRD:18625 6 6q27 uncharacterized LOC401286 unknown - - - - 20121230 -9606 401287 DKFZp686L13185 - - - 6 6q27 uncharacterized LOC401287 unknown - - - - 20120622 -9606 401288 LINC00242 - C6orf122|NCRNA00242|dJ266L20.5 HGNC:21249|HPRD:16657 6 6q27 long intergenic non-protein coding RNA 242 miscRNA LINC00242 long intergenic non-protein coding RNA 242 O - 20121230 -9606 401289 FLJ38122 - - - 6 6q27 uncharacterized LOC401289 miscRNA - - - - 20120622 -9606 401296 LOC401296 - - HPRD:18626 7 7p22.3 uncharacterized LOC401296 unknown - - - - 20121230 -9606 401303 ZNF815P - ZNF815 HGNC:22029 7 7p22.1 zinc finger protein 815, pseudogene pseudo ZNF815P zinc finger protein 815, pseudogene O - 20121230 -9606 401312 LOC401312 - - - 7 7p15.3 uncharacterized LOC401312 unknown - - - - 20121230 -9606 401316 LOC401316 - - - 7 7p15.2 eukaryotic translation initiation factor 4H pseudogene pseudo - - - - 20121230 -9606 401317 LOC401317 - - - 7 7p15.1 uncharacterized LOC401317 unknown - - - - 20121230 -9606 401320 LOC401320 - - - 7 7p15.1 uncharacterized LOC401320 miscRNA - - - - 20121230 -9606 401321 LOC401321 - - - 7 7p14.3 uncharacterized LOC401321 miscRNA - - - - 20121230 -9606 401324 LOC401324 - - - 7 7p14.2 uncharacterized LOC401324 miscRNA - - - - 20121230 -9606 401331 RASA4CP - RASA4P HGNC:44185 7 7p13 RAS p21 protein activator 4C, pseudogene pseudo RASA4CP RAS p21 protein activator 4C, pseudogene O - 20121230 -9606 401335 C7orf65 tcag7.1180 - HGNC:34432|Ensembl:ENSG00000221845|Vega:OTTHUMG00000155550 7 7p12.3 chromosome 7 open reading frame 65 protein-coding C7orf65 chromosome 7 open reading frame 65 O FLJ44108 protein|uncharacterized protein C7orf65 20121230 -9606 401337 FLJ45974 - - HPRD:16997 7 7p12.1 uncharacterized LOC401337 miscRNA - - - - 20121230 -9606 401357 LOC401357 - - HPRD:18429 7 7p11.2 uncharacterized LOC401357 pseudo - - - - 20121230 -9606 401375 GTF2IRD2P1 - GTF2IRD2P HGNC:33127 7 7q11.23 GTF2I repeat domain containing 2 pseudogene 1 pseudo GTF2IRD2P1 GTF2I repeat domain containing 2 pseudogene 1 O - 20121230 -9606 401387 LRRD1 - - HGNC:34300|Ensembl:ENSG00000240720|Vega:OTTHUMG00000155861 7 7q21.2 leucine-rich repeats and death domain containing 1 protein-coding LRRD1 leucine-rich repeats and death domain containing 1 O leucine-rich repeat and death domain-containing protein 1|leucine-rich repeat and death domain-containing protein LOC401387 20121230 -9606 401388 C7orf76 - - HGNC:33815|Ensembl:ENSG00000197851|HPRD:16959 7 7q21.3 chromosome 7 open reading frame 76 protein-coding C7orf76 chromosome 7 open reading frame 76 O putative uncharacterized protein FLJ42280 20121230 -9606 401393 AZGP1P2 - - HGNC:912 7 7q22.1 alpha-2-glycoprotein 1, zinc-binding pseudogene 2 pseudo AZGP1P2 alpha-2-glycoprotein 1, zinc-binding pseudogene 2 O - 20121230 -9606 401396 LOC401396 - - - 7 7q22.3 uncharacterized LOC401396 unknown - - - - 20111025 -9606 401397 LOC401397 - - - 7 7q31.1 uncharacterized LOC401397 miscRNA - - - - 20121230 -9606 401399 PRRT4 hCG_1651889 - HGNC:37280|Ensembl:ENSG00000224940|Vega:OTTHUMG00000157714 7 7q32.1 proline-rich transmembrane protein 4 protein-coding PRRT4 proline-rich transmembrane protein 4 O - 20121230 -9606 401400 LOC401400 - - - 7 7q32.2 uncharacterized LOC401400 protein-coding - - - uncharacterized protein LOC401400 20120508 -9606 401409 RAB19 tcag7.1187 RAB19B HGNC:19982|Ensembl:ENSG00000146955|HPRD:17946|Vega:OTTHUMG00000157410 7 7q34 RAB19, member RAS oncogene family protein-coding RAB19 RAB19, member RAS oncogene family O GTP-binding protein RAB19B|ras-related protein Rab-19 20121230 -9606 401410 LOC401410 - - HPRD:17390 7 7q34 uncharacterized LOC401410 unknown - - - - 20120511 -9606 401427 OR2A7 - HSDJ0798C17|OR2A21 HGNC:8234|Ensembl:ENSG00000243896|HPRD:14933|Vega:OTTHUMG00000158002 7 7q35 olfactory receptor, family 2, subfamily A, member 7 protein-coding OR2A7 olfactory receptor, family 2, subfamily A, member 7 O olfactory receptor 2A7|olfactory receptor OR7-18|olfactory receptor OR7-20|olfactory receptor, family 2, subfamily A, member 21 20121230 -9606 401428 OR2A20P - OR2A20 HGNC:15413 7 7q35 olfactory receptor, family 2, subfamily A, member 20 pseudogene pseudo OR2A20P olfactory receptor, family 2, subfamily A, member 20 pseudogene O - 20121230 -9606 401431 ATP6V0E2-AS1 - - HGNC:44180|HPRD:17391 7 7q36.1 ATP6V0E2 antisense RNA 1 miscRNA ATP6V0E2-AS1 ATP6V0E2 antisense RNA 1 O - 20121230 -9606 401433 LOC401433 - - - 7 7q36.1 uncharacterized LOC401433 unknown - - - - 20120622 -9606 401442 LOC401442 - - - 8 8p23.3 uncharacterized LOC401442 unknown - - - - 20121230 -9606 401445 LOC401445 - - - 8 8p23.2 uncharacterized LOC401445 unknown - - - - 20120508 -9606 401447 USP17L1P - USP17L1 HGNC:37182 8 8p23.1 ubiquitin specific peptidase 17-like family member 1, pseudogene protein-coding USP17L1P ubiquitin specific peptidase 17-like family member 1, pseudogene O deubiquitinating enzyme 17-like protein 1|putative ubiquitin carboxyl-terminal hydrolase 17-like protein 1|ubiquitin specific peptidase 17-like 1 (pseudogene)|ubiquitin specific peptidase 17-like 1, pseudogene|ubiquitin thioesterase 17-like protein 1|ubiquitin-specific-processing protease 17-like protein 1 20121230 -9606 401450 OR7E96P - - HGNC:14815 8 8p23.1 olfactory receptor, family 7, subfamily E, member 96 pseudogene pseudo OR7E96P olfactory receptor, family 7, subfamily E, member 96 pseudogene O - 20121230 -9606 401459 FLJ46365 - - HPRD:13535 8 8q11.21 uncharacterized LOC401459 unknown - - - - 20120710 -9606 401463 LOC401463 - - - 8 8q12.3 uncharacterized LOC401463 miscRNA - - - - 20121230 -9606 401466 C8orf59 - - HGNC:32235|Ensembl:ENSG00000176731|Vega:OTTHUMG00000164787 8 8q21.2 chromosome 8 open reading frame 59 protein-coding C8orf59 chromosome 8 open reading frame 59 O uncharacterized protein C8orf59 20121230 -9606 401470 RPS26P10 - RPS26_16_925 HGNC:32201 8 8q21.3 ribosomal protein S26 pseudogene 10 pseudo RPS26P10 ribosomal protein S26 pseudogene 10 O - 20121230 -9606 401471 FLJ43903 - - - 8 8q22.3 uncharacterized LOC401471 miscRNA - - - - 20121018 -9606 401472 FLJ45248 - - HPRD:16984 8 8q22.3 FLJ45248 protein unknown - - - - 20121230 -9606 401474 SAMD12 - - HGNC:31750|Ensembl:ENSG00000177570|HPRD:15293|Vega:OTTHUMG00000059817 8 8q24.12 sterile alpha motif domain containing 12 protein-coding SAMD12 sterile alpha motif domain containing 12 O SAM domain-containing protein 12|sterile alpha motif domain-containing protein 12 20121230 -9606 401475 SRRM1P1 - SRRM1L|SRRM1P HGNC:31861 8 8q24.21 serine/arginine repetitive matrix 1 pseudogene 1 pseudo SRRM1P1 serine/arginine repetitive matrix 1 pseudogene 1 O - 20121230 -9606 401478 FLJ45872 - - - 8 8q24.23 FLJ45872 protein unknown - - - - 20121230 -9606 401480 LOC401480 - - - 8 8q24.3 uncharacterized LOC401480 unknown - - - - 20120508 -9606 401490 LOC401490 - - - 9 9p24.3 uncharacterized LOC401490 unknown - - - - 20120508 -9606 401491 FLJ35024 - - - 9 9p24.2 uncharacterized LOC401491 miscRNA - - - - 20121230 -9606 401492 FLJ41200 - - - 9 9p23 uncharacterized LOC401492 miscRNA - - - - 20121230 -9606 401494 PTPLAD2 - HACD4 HGNC:20920|Ensembl:ENSG00000188921|HPRD:17392|Vega:OTTHUMG00000021016 9 9p21.3 protein tyrosine phosphatase-like A domain containing 2 protein-coding PTPLAD2 protein tyrosine phosphatase-like A domain containing 2 O 3-hydroxyacyl-CoA dehydratase 4|protein tyrosine phosphatase-like protein PTPLAD2|protein-tyrosine phosphatase-like A domain-containing protein 2 20121230 -9606 401497 LOC401497 - - - 9 9p21.1 uncharacterized LOC401497 miscRNA - - - - 20121230 -9606 401498 TMEM215 - - HGNC:33816|Ensembl:ENSG00000188133|HPRD:17393|Vega:OTTHUMG00000129521 9 9p21.1 transmembrane protein 215 protein-coding TMEM215 transmembrane protein 215 O - 20121230 -9606 401505 TOMM5 RP11-613M10.3 C9orf105|RP11-263I4.1|Tom5|bA613M10.3 HGNC:31369|Ensembl:ENSG00000175768|HPRD:16672|Vega:OTTHUMG00000019923 9 9p13.2 translocase of outer mitochondrial membrane 5 homolog (yeast) protein-coding TOMM5 translocase of outer mitochondrial membrane 5 homolog (yeast) O mitochondrial import receptor subunit TOM5 homolog|mitochondrial outer membrane protein TOM5 20121230 -9606 401507 FAM74A1 - - HGNC:32029|HPRD:17394 9 9p13.1 family with sequence similarity 74, member A1 miscRNA FAM74A1 family with sequence similarity 74, member A1 O - 20121209 -9606 401508 FAM74A4 - - HGNC:32032|HPRD:16982 9 9q12 family with sequence similarity 74, member A4 miscRNA FAM74A4 family with sequence similarity 74, member A4 O - 20121230 -9606 401509 ZNF658B CTD-2173L22.2 - HGNC:32033 9 9p12 zinc finger protein 658B, pseudogene pseudo ZNF658B zinc finger protein 658B, pseudogene O - 20121211 -9606 401522 LOC401522 RP11-160N1.10-001 - - 9 9p11.2 uncharacterized LOC401522 unknown - - - - 20121216 -9606 401525 CDK2AP2P3 - - HGNC:38494 9 9q13 cyclin-dependent kinase 2 associated protein 2 pseudogene 3 pseudo CDK2AP2P3 cyclin-dependent kinase 2 associated protein 2 pseudogene 3 O - 20121230 -9606 401533 DDX10P2 - - HGNC:44961 9 9q21.32 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 pseudogene 2 pseudo DDX10P2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 pseudogene 2 O - 20121230 -9606 401535 C9orf170 - - HGNC:33817|Ensembl:ENSG00000204446|HPRD:16988|Vega:OTTHUMG00000159587 9 9q21.33 chromosome 9 open reading frame 170 protein-coding C9orf170 chromosome 9 open reading frame 170 O uncharacterized protein C9orf170 20121230 -9606 401537 RPSAP49 - RPSA_21_995 HGNC:35660 9 9q22.1 ribosomal protein SA pseudogene 49 pseudo RPSAP49 ribosomal protein SA pseudogene 49 O - 20121230 -9606 401540 OR7E109P - OR7E113P|OST721 HGNC:15118 9 9q22.2 olfactory receptor, family 7, subfamily E, member 109 pseudogene pseudo OR7E109P olfactory receptor, family 7, subfamily E, member 109 pseudogene O - 20121230 -9606 401541 CENPP RP11-19J3.3 CENP-P HGNC:32933|MIM:611505|Ensembl:ENSG00000188312|HPRD:17989|Vega:OTTHUMG00000020228 9 9q22.31 centromere protein P protein-coding CENPP centromere protein P O - 20121230 -9606 401546 C9orf152 RP11-470J20.2 bA470J20.2 HGNC:31455|Ensembl:ENSG00000188959|HPRD:10249|Vega:OTTHUMG00000020478 9 9q31.3 chromosome 9 open reading frame 152 protein-coding C9orf152 chromosome 9 open reading frame 152 O uncharacterized protein C9orf152 20121230 -9606 401548 SNX30 RP11-408O19.4 ATG24A HGNC:23685|Ensembl:ENSG00000148158|Vega:OTTHUMG00000020512 9 9q32 sorting nexin family member 30 protein-coding SNX30 sorting nexin family member 30 O sorting nexin-30 20121230 -9606 401550 TTLL11-IT1 - C9orf148 HGNC:24214 9 9q33.2 TTLL11 intronic transcript 1 (non-protein coding) unknown TTLL11-IT1 TTLL11 intronic transcript 1 (non-protein coding) O - 20121230 -9606 401551 WDR38 RP11-175D17.5 - HGNC:23745|Ensembl:ENSG00000136918|Vega:OTTHUMG00000020664 9 9q33.3 WD repeat domain 38 protein-coding WDR38 WD repeat domain 38 O WD repeat-containing protein 38 20121230 -9606 401554 FLJ46836 - - HPRD:13541 9 9q34.11 FLJ46836 protein unknown - - - - 20121230 -9606 401557 LOC401557 - - - 9 9q34.3 uncharacterized LOC401557 miscRNA - - - - 20121230 -9606 401561 LOC401561 - - - 9 9q34.3 FP7915 protein unknown - - - - 20121230 -9606 401562 LCNL1 - - HGNC:34436|Ensembl:ENSG00000214402|HPRD:16983|Vega:OTTHUMG00000159546 9 9q34.3 lipocalin-like 1 protein-coding LCNL1 lipocalin-like 1 O lipocalin-like 1 protein 20121230 -9606 401563 C9orf139 - - HGNC:31426|Ensembl:ENSG00000180539|HPRD:16942|Vega:OTTHUMG00000020959 9 9q34.3 chromosome 9 open reading frame 139 protein-coding C9orf139 chromosome 9 open reading frame 139 O uncharacterized protein C9orf139 20121230 -9606 401565 FAM166A HSD46 - HGNC:33818|Ensembl:ENSG00000188163|HPRD:13441|Vega:OTTHUMG00000159545 9 9q34.3 family with sequence similarity 166, member A protein-coding FAM166A family with sequence similarity 166, member A O protein FAM166A 20121230 -9606 401577 CD99P1 hCG_1653094 CD99L1|CXYorf12|MIC2R|NCRNA00103 HGNC:7083 X|Y Xp22.33;Yp11.31 CD99 molecule pseudogene 1 pseudo CD99P1 CD99 molecule pseudogene 1 O - 20121230 -9606 401585 FLJ25917 - - - X Xp11.3 uncharacterized LOC401585 miscRNA - - - - 20120622 -9606 401588 ZNF674-AS1 - - HGNC:44266 X Xp11.23 ZNF674 antisense RNA 1 (head to head) miscRNA ZNF674-AS1 ZNF674 antisense RNA 1 (head to head) O - 20121230 -9606 401589 LOC401589 RP11-114H20.1 - HPRD:18430 X Xp11.22 uncharacterized LOC401589 unknown - - - - 20121230 -9606 401602 LOC401602 - - - X Xq21.32 adaptor-related protein complex 2, beta 1 subunit pseudogene pseudo - - - - 20121230 -9606 401612 SLC25A53 LL0XNC01-46H11.2 MCART6 HGNC:31894|Ensembl:ENSG00000176274|HPRD:18628|Vega:OTTHUMG00000022124 X Xq22.2 solute carrier family 25, member 53 protein-coding SLC25A53 solute carrier family 25, member 53 O mitochondrial carrier triple repeat 6|mitochondrial carrier triple repeat protein 6|solute carrier family 25 member 53 20121230 -9606 401613 DKFZp686D0853 - - - X Xq23 uncharacterized LOC401613 miscRNA - - - - 20121230 -9606 401629 FAM224B - LINC00230B|NCRNA00230B HGNC:37737 Y Yq11.221 family with sequence similarity 224, member B (non-protein coding) miscRNA FAM224B family with sequence similarity 224, member B (non-protein coding) O - 20121209 -9606 401630 FAM224A - LINC00230A|NCRNA00230A HGNC:37736 Y Yq11.222 family with sequence similarity 224, member A (non-protein coding) miscRNA FAM224A family with sequence similarity 224, member A (non-protein coding) O - 20121230 -9606 401634 GOLGA2P3Y - GOLGA2LY2|GOLGA2P3 HGNC:32426 Y Yq11.223 golgin A2 pseudogene 3, Y-linked pseudo GOLGA2P3Y golgin A2 pseudogene 3, Y-linked O - 20121230 -9606 401637 OR7E26P - OR1-51|OR1-72|OR1-73|OR7E67P|OR7E68P|OR7E69P|OR7E70P|OR7E71P|OR7E72P|OR7E73P|OR7E74P|OR7E75P|OR912-108|OR912-109|OR912-110|OR912-46|OR912-95|hg523|hg674 HGNC:8398 10 10p13 olfactory receptor, family 7, subfamily E, member 26 pseudogene pseudo OR7E26P olfactory receptor, family 7, subfamily E, member 26 pseudogene O - 20121230 -9606 401638 RPSAP10 - LAMR1P10|RPSA_22_1026 HGNC:31460 10 10p12.1 ribosomal protein SA pseudogene 10 pseudo RPSAP10 ribosomal protein SA pseudogene 10 O - 20121230 -9606 401640 RPL7AP53 - RPL7A_22_1031 HGNC:36392 10 10p11.22 ribosomal protein L7a pseudogene 53 pseudo RPL7AP53 ribosomal protein L7a pseudogene 53 O - 20121230 -9606 401646 LOC401646 - - - 10 10q22.3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 pseudogene pseudo - - - - 20121230 -9606 401647 GOLGA7B - C10orf132|C10orf133|bA451M19.3|bA459F3.4 HGNC:31668|MIM:614189|Ensembl:ENSG00000155265|HPRD:16579|Vega:OTTHUMG00000018869 10 10q24.2 golgin A7 family, member B protein-coding GOLGA7B golgin A7 family, member B O Golgin subfamily A member 7B|golgi autoantigen, golgin subfamily a, 7B 20121230 -9606 401648 ST13P13 - - HGNC:38788 10 10q24.33 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 13 pseudo ST13P13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 13 O - 20121230 -9606 401661 OR51C1P - OR51C2P|OR51C3P|OST734 HGNC:15191 11 11p15.4 olfactory receptor, family 51, subfamily C, member 1 pseudogene pseudo OR51C1P olfactory receptor, family 51, subfamily C, member 1 pseudogene O - 20121230 -9606 401662 OR51A8P - - HGNC:15189 11 11p15.4 olfactory receptor, family 51, subfamily A, member 8 pseudogene pseudo OR51A8P olfactory receptor, family 51, subfamily A, member 8 pseudogene O - 20121230 -9606 401663 OR51H1P - OR51H1 HGNC:14833 11 11p15.4 olfactory receptor, family 51, subfamily H, member 1 pseudogene pseudo OR51H1P olfactory receptor, family 51, subfamily H, member 1 pseudogene O - 20121230 -9606 401664 OR51H2P - - HGNC:15199 11 11p15.4 olfactory receptor, family 51, subfamily H, member 2 pseudogene pseudo OR51H2P olfactory receptor, family 51, subfamily H, member 2 pseudogene O - 20121230 -9606 401665 OR51T1 - OR11-26 HGNC:15205|Ensembl:ENSG00000176900|HPRD:17740|Vega:OTTHUMG00000066507 11 11p15.4 olfactory receptor, family 51, subfamily T, member 1 protein-coding OR51T1 olfactory receptor, family 51, subfamily T, member 1 O olfactory receptor 51T1|olfactory receptor OR11-26 20121230 -9606 401666 OR51A4 - - HGNC:14795|Ensembl:ENSG00000205497|HPRD:14991|Vega:OTTHUMG00000066614 11 11p15.4 olfactory receptor, family 51, subfamily A, member 4 protein-coding OR51A4 olfactory receptor, family 51, subfamily A, member 4 O olfactory receptor 51A4 20121230 -9606 401667 OR51A2 - - HGNC:14764|Ensembl:ENSG00000205496|HPRD:17733|Vega:OTTHUMG00000066602 11 11p15.4 olfactory receptor, family 51, subfamily A, member 2 protein-coding OR51A2 olfactory receptor, family 51, subfamily A, member 2 O olfactory receptor 51A2 20121230 -9606 401675 OR56B3P - - HGNC:15247 11 11p15.4 olfactory receptor, family 56, subfamily B, member 3 pseudogene pseudo OR56B3P olfactory receptor, family 56, subfamily B, member 3 pseudogene O - 20121230 -9606 401676 LOC401676 - - - 11 11p15.2 60S ribosomal protein L13a-like pseudo - - - - 20121209 -9606 401677 LOC401677 - - - 11 11p14.1 eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 401679 LOC401679 - - - 11 11p11.2 filamin binding LIM protein 1 pseudogene pseudo - - - - 20121230 -9606 401687 OR5J1P - HTPCRH02|OR11-169|OR5J1 HGNC:8348 11 11q12.1 olfactory receptor, family 5, subfamily J, member 1 pseudogene pseudo OR5J1P olfactory receptor, family 5, subfamily J, member 1 pseudogene O - 20121230 -9606 401692 OR5B1P - OR3-144|OR5B14P|OR5B5|OR5B5P|OR5B6|OR5B6P|OR5B7|OR5B7P|OR5B8|OR5B8P|OR5B9|OR5B9P|OR6-55|OR6-57|OR8-122|OR8-123|OR912-92 HGNC:8322 11 11q12.1 olfactory receptor, family 5, subfamily B, member 1 pseudogene pseudo OR5B1P olfactory receptor, family 5, subfamily B, member 1 pseudogene O - 20121230 -9606 401696 OR4D8P - - HGNC:15177 11 11q12.1 olfactory receptor, family 4, subfamily D, member 8 pseudogene pseudo OR4D8P olfactory receptor, family 4, subfamily D, member 8 pseudogene O - 20121230 -9606 401703 LOC401703 - - - 11 11q13.4 U2 small nuclear RNA auxiliary factor 1-like 4 pseudogene pseudo - - - - 20121230 -9606 401708 GLULP3 - GLULL3 HGNC:4344 11 11q24.1 glutamate-ammonia ligase (glutamine synthetase) pseudogene 3 pseudo GLULP3 glutamate-ammonia ligase (glutamine synthetase) pseudogene 3 O - 20121230 -9606 401717 EEF1A1P17 - - HGNC:37890 12 12q12 eukaryotic translation elongation factor 1 alpha 1 pseudogene 17 pseudo EEF1A1P17 eukaryotic translation elongation factor 1 alpha 1 pseudogene 17 O - 20121230 -9606 401718 OR5BK1P - - HGNC:14817 12 12q13.11 olfactory receptor, family 5, subfamily BK, member 1 pseudogene pseudo OR5BK1P olfactory receptor, family 5, subfamily BK, member 1 pseudogene O - 20121230 -9606 401720 FIGNL2 - - HGNC:13287|HPRD:18433 12 12q13.13 fidgetin-like 2 protein-coding FIGNL2 fidgetin-like 2 O putative fidgetin-like protein 2 20121230 -9606 401725 RPL6P25 - RPL6_15_1263 HGNC:36840 12 12q21.31 ribosomal protein L6 pseudogene 25 pseudo RPL6P25 ribosomal protein L6 pseudogene 25 O - 20121230 -9606 401730 IPMKP1 RP11-363G2.2 - HGNC:39354 13 13q12.12 inositol polyphosphate multikinase pseudogene 1 pseudo IPMKP1 inositol polyphosphate multikinase pseudogene 1 O - 20121230 -9606 401742 OR11K2P - - HGNC:19635 14 14q11.2 olfactory receptor, family 11, subfamily K, member 2 pseudogene pseudo OR11K2P olfactory receptor, family 11, subfamily K, member 2 pseudogene O - 20121230 -9606 401744 SMARCE1P3 - - HGNC:39733 14 14q11.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 3 pseudo SMARCE1P3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 3 O - 20121230 -9606 401767 LOC401767 - - - 14 14q12 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) pseudogene pseudo - - - - 20121230 -9606 401770 LOC401770 - - - 14 14q21.2 DET1 and DDB1 associated 1 pseudogene pseudo - - - - 20121230 -9606 401777 LOC401777 - - - 14 14q22.3 serine/arginine-rich splicing factor 12 pseudogene pseudo - - - - 20121230 -9606 401805 LOC401805 - - - 15 15q11.2 ring finger protein 145 pseudogene pseudo - - - - 20121230 -9606 401817 RPS10P22 - RPS10_12_1442 HGNC:35814 15 15q22.2 ribosomal protein S10 pseudogene 22 pseudo RPS10P22 ribosomal protein S10 pseudogene 22 O - 20121230 -9606 401822 FDPSP9 - - HGNC:39086 15 15q25.1 farnesyl diphosphate synthase pseudogene 9 pseudo FDPSP9 farnesyl diphosphate synthase pseudogene 9 O - 20121230 -9606 401825 MKI67IPP1 - - HGNC:44949 10 10p11.23 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 1 pseudo MKI67IPP1 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 1 O - 20121230 -9606 401827 MSLNL - C16orf37|MPFL HGNC:14170 16 16p13.3 mesothelin-like pseudo MSLNL mesothelin-like O - 20121230 -9606 401863 RPL10AP12 - RPL10A_7_1502 HGNC:36108 16 16q24.1 ribosomal protein L10a pseudogene 12 pseudo RPL10AP12 ribosomal protein L10a pseudogene 12 O - 20121230 -9606 401864 LOC401864 - - - 16 16q24.1 chloride intracellular channel 1 pseudogene pseudo - - - - 20121230 -9606 401865 RPL7AP63 - RPL7A_28_1503 HGNC:35504 16 16q24.1 ribosomal protein L7a pseudogene 63 pseudo RPL7AP63 ribosomal protein L7a pseudogene 63 O - 20121230 -9606 401875 LOC401875 - - - 17 17p11.2 differentially expressed in FDCP 8 homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 401884 MGC57346 - - - 17 17q21.31 uncharacterized LOC401884 miscRNA - - - - 20121230 -9606 401895 RPS15P9 - RPS15_5_1616 HGNC:36440 19 19p13.3 ribosomal protein S15 pseudogene 9 pseudo RPS15P9 ribosomal protein S15 pseudogene 9 O - 20121230 -9606 401898 ZNF833P - ZNF833 HGNC:33819|HPRD:18434 19 19p13.2 zinc finger protein 833, pseudogene pseudo ZNF833P zinc finger protein 833, pseudogene O - 20121230 -9606 401903 OR10B1P - OR10B2 HGNC:8163 19 19p13.12 olfactory receptor, family 10, subfamily B, member 1 pseudogene pseudo OR10B1P olfactory receptor, family 10, subfamily B, member 1 pseudogene O - 20121230 -9606 401904 RPL23AP2 - RPL23A_38_1631 HGNC:10319 19 19p13.12 ribosomal protein L23a pseudogene 2 pseudo RPL23AP2 ribosomal protein L23a pseudogene 2 O - 20121230 -9606 401911 RPL29P33 - RPL29_22_1650 HGNC:36923 19 19q13.11 ribosomal protein L29 pseudogene 33 pseudo RPL29P33 ribosomal protein L29 pseudogene 33 O - 20121230 -9606 401913 LOC401913 - - - 19 19q13.11 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) pseudogene pseudo - - - - 20121230 -9606 401914 LOC401914 - - - 19 19q13.12 C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 401934 RNF223 - - HGNC:40020|Ensembl:ENSG00000237330 1 1p36.33 ring finger protein 223 protein-coding RNF223 ring finger protein 223 O RING finger protein 223 20121230 -9606 401940 PRAMEF3 RP11-248D7.1 - HGNC:14087|Ensembl:ENSG00000204503|HPRD:18435|Vega:OTTHUMG00000009404 1 1p36.21 PRAME family member 3 protein-coding PRAMEF3 PRAME family member 3 O - 20121230 -9606 401944 LDLRAD2 RP11-132G19.1 - HGNC:32071|Ensembl:ENSG00000187942|HPRD:18436|Vega:OTTHUMG00000002675 1 1p36.12 low density lipoprotein receptor class A domain containing 2 protein-coding LDLRAD2 low density lipoprotein receptor class A domain containing 2 O low density lipoprotein receptor A domain containing 2|low-density lipoprotein receptor class A domain-containing protein 2 20121230 -9606 401957 LOC401957 - - - 1 1p21.1 matrin 3 pseudogene pseudo - - - - 20121230 -9606 401959 LOC401959 - - - 1 1p12 voltage-dependent anion channel 2 pseudogene pseudo - - - - 20121230 -9606 401960 GAPDHP27 - - HGNC:37779 1 1p12 glyceraldehyde 3 phosphate dehydrogenase pseudogene 27 pseudo GAPDHP27 glyceraldehyde 3 phosphate dehydrogenase pseudogene 27 O - 20121230 -9606 401967 NBPF17P RP11-744H18.2 - HGNC:31997 1 1q21.2 neuroblastoma breakpoint family, member 17, pseudogene pseudo NBPF17P neuroblastoma breakpoint family, member 17, pseudogene O - 20121230 -9606 401973 OR10J6P - OR10J6 HGNC:14994 1 1q23.2 olfactory receptor, family 10, subfamily J, member 6 pseudogene pseudo OR10J6P olfactory receptor, family 10, subfamily J, member 6 pseudogene O - 20121230 -9606 401974 RPS2P10 - RPS2_4_110 HGNC:36892 1 1q24.1 ribosomal protein S2 pseudogene 10 pseudo RPS2P10 ribosomal protein S2 pseudogene 10 O - 20121230 -9606 401975 RPS3AP10 - RPS3A_2_114 HGNC:36036 1 1q24.1 ribosomal protein S3a pseudogene 10 pseudo RPS3AP10 ribosomal protein S3a pseudogene 10 O - 20121230 -9606 401980 LOC401980 - - - 1 1q32.1 4933406M09Rik pseudogene pseudo - - - - 20121115 -9606 401981 FDPSP8 - - HGNC:39085 1 1q32.3 farnesyl diphosphate synthase pseudogene 8 pseudo FDPSP8 farnesyl diphosphate synthase pseudogene 8 O - 20121230 -9606 401982 AKR1B1P1 - ALDRL1 HGNC:420 1 1q42.12 aldehyde reductase family 1, member B1 pseudogene 1 pseudo AKR1B1P1 aldehyde reductase family 1, member B1 pseudogene 1 O - 20121230 -9606 401983 ZNF847P RP5-870F10.1 gm127 HGNC:34384 1 1q42.13 zinc finger protein 847, pseudogene pseudo ZNF847P zinc finger protein 847, pseudogene O - 20121021 -9606 401992 OR2T2 - OR1-43|OR2T2P HGNC:14725|Ensembl:ENSG00000196240|HPRD:17706|Vega:OTTHUMG00000040480 1 1q44 olfactory receptor, family 2, subfamily T, member 2 protein-coding OR2T2 olfactory receptor, family 2, subfamily T, member 2 O olfactory receptor 2T2|olfactory receptor OR1-43|olfactory receptor, family 2, subfamily T, member 2 pseudogene 20121230 -9606 401993 OR2T5 - OR1-62 HGNC:15017|Ensembl:ENSG00000203661|HPRD:17710|Vega:OTTHUMG00000040481 1 1q44 olfactory receptor, family 2, subfamily T, member 5 protein-coding OR2T5 olfactory receptor, family 2, subfamily T, member 5 O olfactory receptor 2T5|olfactory receptor OR1-62 20121230 -9606 401994 OR14I1 - OR5BU1|OR5BU1P HGNC:19575|Ensembl:ENSG00000189181|HPRD:17755|Vega:OTTHUMG00000040378 1 1q44 olfactory receptor, family 14, subfamily I, member 1 protein-coding OR14I1 olfactory receptor, family 14, subfamily I, member 1 O olfactory receptor 14I1|olfactory receptor 5BU1|olfactory receptor, family 5, subfamily BU, member 1 pseudogene 20121230 -9606 402016 BPIFB9P - C20orf115|dJ1187J4.2|dJ1187J4.3 HGNC:16109 20 20q11.21 BPI fold containing family B, member 9, pseudogene pseudo BPIFB9P BPI fold containing family B, member 9, pseudogene O - 20121230 -9606 402036 LOC402036 - - - 22 22q11.21 hCG1646661-like protein-coding - - - - 20121018 -9606 402055 SRRD CTB-1048E9.5 HC/HCC|SRR1L HGNC:33910|MIM:602254|Ensembl:ENSG00000100104|HPRD:18437|Vega:OTTHUMG00000150885 22 22q12.1 SRR1 domain containing protein-coding SRRD SRR1 domain containing O SRR1 domain-containing protein|SRR1-like protein|hepatocellular carcinoma complicating hemochromatosis 20121230 -9606 402057 RPS17P16 SC22CB-1E7.1 RPS17_8_1748 HGNC:36821 22 22q12.3 ribosomal protein S17 pseudogene 16 pseudo RPS17P16 ribosomal protein S17 pseudogene 16 O - 20121230 -9606 402069 RPS16P2 - RPS16_1_197 HGNC:35928 2 2p24.1 ribosomal protein S16 pseudogene 2 pseudo RPS16P2 ribosomal protein S16 pseudogene 2 O - 20121230 -9606 402076 LOC402076 - - - 2 2p14 F-box and leucine-rich repeat protein 12 pseudogene pseudo - - - - 20121230 -9606 402077 OR7E46P - MCEEP|OST379 HGNC:8420 2 2p13.3 olfactory receptor, family 7, subfamily E, member 46 pseudogene pseudo OR7E46P olfactory receptor, family 7, subfamily E, member 46 pseudogene O - 20121230 -9606 402093 LOC402093 - - - 2 2q12.1 adenosylhomocysteinase pseudogene pseudo - - - - 20121230 -9606 402096 LOC402096 - - - 2 2q12.2 uncharacterized LOC402096 pseudo - - - - 20121209 -9606 402100 RPL22P11 - RPL22P15|RPL22P9|RPL22_3_260|RPL22_5_261 HGNC:35603 2 2q13 ribosomal protein L22 pseudogene 11 pseudo RPL22P11 ribosomal protein L22 pseudogene 11 O - 20121230 -9606 402112 LOC402112 - - - 2 2q31.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 402116 PKP4P1 - - HGNC:42661 2 2q34 plakophilin 4 pseudogene 1 pseudo PKP4P1 plakophilin 4 pseudogene 1 O - 20121230 -9606 402117 VWC2L - - HGNC:37203|Ensembl:ENSG00000174453|Vega:OTTHUMG00000154811 2 2q34-q35 von Willebrand factor C domain containing protein 2-like protein-coding VWC2L von Willebrand factor C domain containing protein 2-like O brorin-like|von Willebrand factor C domain-containing protein 2-like 20121230 -9606 402120 RPL23P5 - RPL23_3_328 HGNC:35747 2 2q36.1 ribosomal protein L23 pseudogene 5 pseudo RPL23P5 ribosomal protein L23 pseudogene 5 O - 20121230 -9606 402123 RPSAP32 - - - 3 3p26.3 ribosomal protein SA pseudogene 32 pseudo - - - - 20121230 -9606 402125 LOC402125 - - - 3 3p24.3 heat shock 70kDa protein 6 (HSP70B') pseudogene pseudo - - - - 20121230 -9606 402133 OR7E121P - - HGNC:15049 3 3p12.3 olfactory receptor, family 7, subfamily E, member 121 pseudogene pseudo OR7E121P olfactory receptor, family 7, subfamily E, member 121 pseudogene O - 20121230 -9606 402134 KRT8P25 - - HGNC:33377 3 3p11.2 keratin 8 pseudogene 25 pseudo KRT8P25 keratin 8 pseudogene 25 O - 20121230 -9606 402135 OR5K2 - OR3-9 HGNC:14774|Ensembl:ENSG00000231861|HPRD:15044|Vega:OTTHUMG00000160049 3 3q11.2 olfactory receptor, family 5, subfamily K, member 2 protein-coding OR5K2 olfactory receptor, family 5, subfamily K, member 2 O olfactory receptor 5K2|olfactory receptor OR3-9 20121230 -9606 402143 HSPA8P9 - - HGNC:44924 3 3q22.3 heat shock 70kDa protein 8 pseudogene 9 pseudo HSPA8P9 heat shock 70kDa protein 8 pseudogene 9 O - 20121230 -9606 402146 B3GAT3P1 - B3GAT3P|PSIGLCAT-I HGNC:35243 3 3q25.33 beta-1,3-glucuronyltransferase 3 pseudogene 1 pseudo B3GAT3P1 beta-1,3-glucuronyltransferase 3 pseudogene 1 O - 20121230 -9606 402149 RPL28P1 hCG_18247 RPL28_2_436|bcm2489 HGNC:31359 3 3q26.2 ribosomal protein L28 pseudogene 1 pseudo RPL28P1 ribosomal protein L28 pseudogene 1 O - 20121230 -9606 402150 RPL8P4 - RPL8_1_438 HGNC:35555 3 3q26.31 ribosomal protein L8 pseudogene 4 pseudo RPL8P4 ribosomal protein L8 pseudogene 4 O - 20121230 -9606 402152 RPL7L1P8 - - HGNC:39490 3 3q26.33 ribosomal protein L7-like 1 pseudogene 8 pseudo RPL7L1P8 ribosomal protein L7-like 1 pseudogene 8 O - 20121230 -9606 402160 LOC402160 - - - 4 4p16.3 uncharacterized LOC402160 protein-coding - - - uncharacterized protein LOC402160 20121230 -9606 402175 LOC402175 - - - 4 4p13 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene pseudo - - - - 20121230 -9606 402176 RPL21P44 - RPL21_17_477 HGNC:33820|HPRD:17396 4 4q12 ribosomal protein L21 pseudogene 44 pseudo RPL21P44 ribosomal protein L21 pseudogene 44 O - 20121230 -9606 402182 LOC402182 - - - 4 4q24 family with sequence similarity 64, member A pseudogene pseudo - - - - 20121230 -9606 402183 RAC1P5 - Psi1Rac1 HGNC:30593 4 4q25 ras-related C3 botulinum toxin substrate 1 pseudogene 5 pseudo RAC1P5 ras-related C3 botulinum toxin substrate 1 pseudogene 5 O - 20121230 -9606 402184 RPS12P8 - RPS12_4_508 HGNC:35945 4 4q25 ribosomal protein S12 pseudogene 8 pseudo RPS12P8 ribosomal protein S12 pseudogene 8 O - 20121230 -9606 402191 LOC402191 - - - 4 4q32.3 nucleolar protein 8 pseudogene pseudo - - - - 20121230 -9606 402192 LOC402192 - - - 4 4q33 chloride channel, nucleotide-sensitive, 1A pseudogene pseudo - - - - 20121230 -9606 402193 RPL5P11 - RPL5_6_536 HGNC:35483 4 4q34.1 ribosomal protein L5 pseudogene 11 pseudo RPL5P11 ribosomal protein L5 pseudogene 11 O - 20121230 -9606 402213 LOC402213 - - - 5 5p12 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 402214 RPL13AP13 - RPL13A_4_562 HGNC:36541 5 5q11.2 ribosomal protein L13a pseudogene 13 pseudo RPL13AP13 ribosomal protein L13a pseudogene 13 O - 20121230 -9606 402216 LOC402216 - - - 5 5q11.2 heterogeneous nuclear ribonucleoprotein H1 (H) pseudogene pseudo - - - - 20121230 -9606 402220 YTHDF1P1 - YTHDF1P HGNC:31681 5 5q15 YTH domain family, member 1 pseudogene 1 pseudo YTHDF1P1 YTH domain family, member 1 pseudogene 1 O - 20121230 -9606 402221 LOC402221 - - - 5 5q15 actin, beta pseudogene pseudo - - - - 20121230 -9606 402222 DDX18P4 - - HGNC:33967 5 5q15 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 4 pseudo DDX18P4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 4 O - 20121230 -9606 402226 CCT5P1 - CCT5-3P HGNC:35135 5 5q22.3 chaperonin containing TCP1, subunit 5 (epsilon) pseudogene 1 pseudo CCT5P1 chaperonin containing TCP1, subunit 5 (epsilon) pseudogene 1 O - 20121230 -9606 402229 LOC402229 - - - 5 5q23.3 splicing factor 4 pseudogene pseudo - - - - 20121230 -9606 402230 LOC402230 - - - 5 5q31.1 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) pseudogene pseudo - - - - 20121230 -9606 402236 OR1X1P - - HGNC:15062 5 5q35.2 olfactory receptor, family 1, subfamily X, member 1 pseudogene pseudo OR1X1P olfactory receptor, family 1, subfamily X, member 1 pseudogene O - 20121230 -9606 402240 OR1X5P - - HGNC:31245 5 5q35.3 olfactory receptor, family 1, subfamily X, member 5 pseudogene pseudo OR1X5P olfactory receptor, family 1, subfamily X, member 5 pseudogene O - 20121230 -9606 402246 OR10AH1P - - HGNC:19647 7 7p22.1 olfactory receptor, family 10, subfamily AH, member 1 pseudogene pseudo OR10AH1P olfactory receptor, family 10, subfamily AH, member 1 pseudogene O - 20121230 -9606 402249 OR7E59P - OR7E137P|OR7E59|OST119 HGNC:8434 7 7p22.1 olfactory receptor, family 7, subfamily E, member 59 pseudogene pseudo OR7E59P olfactory receptor, family 7, subfamily E, member 59 pseudogene O - 20121230 -9606 402269 LOC402269 - - - 7 7q11.21 equilibrative nucleoside transporter 4-like protein-coding - - - - 20121209 -9606 402273 VN1R37P - - HGNC:37357 7 7q11.21 vomeronasal 1 receptor 37 pseudogene pseudo VN1R37P vomeronasal 1 receptor 37 pseudogene O - 20121230 -9606 402279 LOC402279 - - - 7 7q11.21 glutamate receptor, metabotropic 8 pseudogene pseudo - - - - 20121230 -9606 402287 RPS3AP21 - RPS3A_7_600 HGNC:36841 5 5q22.1 ribosomal protein S3a pseudogene 21 pseudo RPS3AP21 ribosomal protein S3a pseudogene 21 O - 20121230 -9606 402317 OR2A42 - - HGNC:31230|Ensembl:ENSG00000212807|HPRD:18486|Vega:OTTHUMG00000157995 7 7q35 olfactory receptor, family 2, subfamily A, member 42 protein-coding OR2A42 olfactory receptor, family 2, subfamily A, member 42 O olfactory receptor 2A1/2A42|olfactory receptor OR7-16|olfactory receptor OR7-19 20121230 -9606 402329 LOC402329 - - - 8 8p23.1 ubiquitin carboxyl-terminal hydrolase 17-like protein 2-like pseudo - - - - 20121230 -9606 402333 OR7E160P - - HGNC:31233 8 8p23.1 olfactory receptor, family 7, subfamily E, member 160 pseudogene pseudo OR7E160P olfactory receptor, family 7, subfamily E, member 160 pseudogene O - 20121230 -9606 402342 RPL13AP18 - RPL13A_5_919 HGNC:36593 8 8q21.13 ribosomal protein L13a pseudogene 18 pseudo RPL13AP18 ribosomal protein L13a pseudogene 18 O - 20121230 -9606 402359 KHSRPP1 - - HGNC:39198 9 9p21.3 KH-type splicing regulatory protein pseudogene 1 pseudo KHSRPP1 KH-type splicing regulatory protein pseudogene 1 O - 20121230 -9606 402360 LOC402360 - - - 9 9p21.3 NOP56 ribonucleoprotein homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 402374 OR13D3P - - HGNC:15106 9 9q31.1 olfactory receptor, family 13, subfamily D, member 3 pseudogene pseudo OR13D3P olfactory receptor, family 13, subfamily D, member 3 pseudogene O - 20121230 -9606 402375 YBX1P6 - - HGNC:42427 9 9q31.3 Y box binding protein 1 pseudogene 6 pseudo YBX1P6 Y box binding protein 1 pseudogene 6 O - 20121230 -9606 402381 SOHLH1 RP11-100C15.3 C9orf157|NOHLH|SPATA27|TEB2|bA100C15.3|bHLHe80 HGNC:27845|MIM:610224|Ensembl:ENSG00000165643|HPRD:16678|Vega:OTTHUMG00000020915 9 9q34.3 spermatogenesis and oogenesis specific basic helix-loop-helix 1 protein-coding SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 O newborn ovary helix loop helix|spermatogenesis associated 27|spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1 20121230 -9606 402394 IMPDH1P2 - - HGNC:33957 X Xp11.4 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 2 pseudo IMPDH1P2 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 2 O - 20121230 -9606 402408 PKMP2 - - HGNC:44244 X Xq12 pyruvate kinase, muscle pseudogene 2 pseudo PKMP2 pyruvate kinase, muscle pseudogene 2 O - 20121230 -9606 402415 XKRX LL0XNC01-131B10.1 XKR2|XPLAC|XRG2 HGNC:29845|MIM:300684|Ensembl:ENSG00000182489|HPRD:11687|Vega:OTTHUMG00000022010 X Xq22.1 XK, Kell blood group complex subunit-related, X-linked protein-coding XKRX XK, Kell blood group complex subunit-related, X-linked O X Kell blood group precursor-related, X-linked|XK-related protein 2|membrane protein XPLAC 20121230 -9606 402420 EEF1A1P30 - - HGNC:37906 X Xq24 eukaryotic translation elongation factor 1 alpha 1 pseudogene 30 pseudo EEF1A1P30 eukaryotic translation elongation factor 1 alpha 1 pseudogene 30 O - 20121230 -9606 402422 LOC402422 - - - X Xq25 tubulin, beta 4A class IVa pseudogene pseudo - - - - 20121230 -9606 402424 OR13K1P - - HGNC:14721 X Xq26.2 olfactory receptor, family 13, subfamily K, member 1 pseudogene pseudo OR13K1P olfactory receptor, family 13, subfamily K, member 1 pseudogene O - 20121230 -9606 402425 LOC402425 - - - X Xq26.2 5'-nucleotidase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 402429 KRT8P8 - - HGNC:33362 X Xq28 keratin 8 pseudogene 8 pseudo KRT8P8 keratin 8 pseudogene 8 O - 20121230 -9606 402469 LOC402469 tcag7.1056 FKSG50|FKSG53|FKSG54 - 7 7q11.21 uncharacterized LOC402469 other - - - - 20120710 -9606 402481 PP13004 - - - 7 7p14.2 uncharacterized LOC402481 unknown - - - - 20121230 -9606 402483 FLJ45340 tcag7.907 - - 7 7q32.1 uncharacterized LOC402483 miscRNA - - - - 20121230 -9606 402509 SLC29A4P1 - - HGNC:43783 7 7p11.2 solute carrier family 29 (nucleoside transporters), member 4 pseudogene 1 pseudo SLC29A4P1 solute carrier family 29 (nucleoside transporters), member 4 pseudogene 1 O - 20121230 -9606 402562 HNRNPA1P8 hCG_2023776 - HGNC:39126 7 7q21.11 heterogeneous nuclear ribonucleoprotein A1 pseudogene 8 pseudo HNRNPA1P8 heterogeneous nuclear ribonucleoprotein A1 pseudogene 8 O - 20121230 -9606 402569 KPNA7 - - HGNC:21839|MIM:614107|Ensembl:ENSG00000185467|Vega:OTTHUMG00000154412 7 7q22.1 karyopherin alpha 7 (importin alpha 8) protein-coding KPNA7 karyopherin alpha 7 (importin alpha 8) O importin subunit alpha-8|karyopherin 7|karyopherin subunit alpha-7 20121230 -9606 402573 C7orf61 - - HGNC:22135|Ensembl:ENSG00000185955|HPRD:17558|Vega:OTTHUMG00000150234 7 7q22.1 chromosome 7 open reading frame 61 protein-coding C7orf61 chromosome 7 open reading frame 61 O uncharacterized protein C7orf61 20121230 -9606 402634 LOC402634 - - - 7 7p22.3 neugrin, neurite outgrowth associated pseudogene pseudo - - - - 20121230 -9606 402635 GRIFIN tcag7.945 - HGNC:4577 7 7p22.3 galectin-related inter-fiber protein pseudo GRIFIN galectin-related inter-fiber protein O - 20121230 -9606 402641 LOC402641 - - - 7 7p21.1 v-ral simian leukemia viral oncogene homolog A (ras related) pseudogene pseudo - - - - 20121230 -9606 402643 TPM3P4 - - HGNC:39167 7 7p15.2 tropomyosin 3 pseudogene 4 pseudo TPM3P4 tropomyosin 3 pseudogene 4 O - 20121230 -9606 402644 LOC402644 tcag7.873 - - 7 7p15.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 402665 IGLON5 - - HGNC:34550|Ensembl:ENSG00000142549|Vega:OTTHUMG00000154422 19 19q13.41 IgLON family member 5 protein-coding IGLON5 IgLON family member 5 O Ig-like domain-containing protein ENSP00000270642|hCG1651476|igLON family member 5 20121230 -9606 402676 NDUFAF4P2 - - HGNC:44541 7 7q21.3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 2 pseudo NDUFAF4P2 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 2 O - 20121230 -9606 402679 MARK2P10 - - HGNC:39801 7 7q21.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 10 pseudo MARK2P10 MAP/microtubule affinity-regulating kinase 2 pseudogene 10 O - 20121230 -9606 402682 UFSP1 tcag7.1226 UFSP HGNC:33821|MIM:611481|Ensembl:ENSG00000176125|HPRD:18630|Vega:OTTHUMG00000159662 7 7q22.1 UFM1-specific peptidase 1 (non-functional) protein-coding UFSP1 UFM1-specific peptidase 1 (non-functional) O inactive Ufm1-specific protease 1 20121230 -9606 402694 RPL15P11 tcag7.350 RPL15_5_851 HGNC:36093 7 7q33 ribosomal protein L15 pseudogene 11 pseudo RPL15P11 ribosomal protein L15 pseudogene 11 O - 20121230 -9606 402715 LOC402715 tcag7.926 - - 7 7q35 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) pseudogene pseudo - - - - 20121230 -9606 402716 RPL32P17 tcag7.986 RPL32_9_862 HGNC:36251 7 7q36.1 ribosomal protein L32 pseudogene 17 pseudo RPL32P17 ribosomal protein L32 pseudogene 17 O - 20121230 -9606 402778 IFITM10 - DSPA3 HGNC:40022|Ensembl:ENSG00000244242|Vega:OTTHUMG00000043933 11 11p15.5 interferon induced transmembrane protein 10 protein-coding IFITM10 interferon induced transmembrane protein 10 O dispanin subfamily A member 3|interferon-induced transmembrane protein 10 20121230 -9606 402779 LOC402779 - - - 1 - uncharacterized LOC402779 miscRNA - - - - 20121230 -9606 403150 FLJ31356 - - - 2 2p23.3 uncharacterized protein FLJ31356 miscRNA - - - - 20121230 -9606 403219 OR7E157P - - HGNC:31231 8 8p23 olfactory receptor, family 7, subfamily E, member 157 pseudogene pseudo OR7E157P olfactory receptor, family 7, subfamily E, member 157 pseudogene O - 20121230 -9606 403223 OR10AE3P - - HGNC:31235 12 12q13.2 olfactory receptor, family 10, subfamily AE, member 3 pseudogene pseudo OR10AE3P olfactory receptor, family 10, subfamily AE, member 3 pseudogene O - 20121230 -9606 403224 OR10AK1P - - HGNC:31236 11 11q olfactory receptor, family 10, subfamily AK, member 1 pseudogene pseudo OR10AK1P olfactory receptor, family 10, subfamily AK, member 1 pseudogene O - 20121230 -9606 403225 OR10V7P - - HGNC:31237 14 14q21.1 olfactory receptor, family 10, subfamily V, member 7 pseudogene pseudo OR10V7P olfactory receptor, family 10, subfamily V, member 7 pseudogene O - 20121230 -9606 403226 OR11J5P - - HGNC:31238 15 15q11.2 olfactory receptor, family 11, subfamily J, member 5 pseudogene pseudo OR11J5P olfactory receptor, family 11, subfamily J, member 5 pseudogene O - 20121230 -9606 403227 OR11Q1P - - HGNC:31239 X Xq26.1 olfactory receptor, family 11, subfamily Q, member 1 pseudogene pseudo OR11Q1P olfactory receptor, family 11, subfamily Q, member 1 pseudogene O - 20121230 -9606 403228 OR13Z1P - - HGNC:31240 1 1q21.1 olfactory receptor, family 13, subfamily Z, member 1 pseudogene pseudo OR13Z1P olfactory receptor, family 13, subfamily Z, member 1 pseudogene O - 20121230 -9606 403229 OR13Z2P - - HGNC:31241 1 1q21.1 olfactory receptor, family 13, subfamily Z, member 2 pseudogene pseudo OR13Z2P olfactory receptor, family 13, subfamily Z, member 2 pseudogene O - 20121230 -9606 403230 OR13Z3P - - HGNC:31242 1 1q21.1 olfactory receptor, family 13, subfamily Z, member 3 pseudogene pseudo OR13Z3P olfactory receptor, family 13, subfamily Z, member 3 pseudogene O - 20121230 -9606 403231 OR1AC1P - - HGNC:31243 17 17p13.3 olfactory receptor, family 1, subfamily AC, member 1 pseudogene pseudo OR1AC1P olfactory receptor, family 1, subfamily AC, member 1 pseudogene O - 20121230 -9606 403232 OR1M4P - - HGNC:31244 19 19p13.2 olfactory receptor, family 1, subfamily M, member 4 pseudogene pseudo OR1M4P olfactory receptor, family 1, subfamily M, member 4 pseudogene O - 20121230 -9606 403234 OR2A41P - - HGNC:31246 7 7q35 olfactory receptor, family 2, subfamily A, member 41 pseudogene pseudo OR2A41P olfactory receptor, family 2, subfamily A, member 41 pseudogene O - 20121230 -9606 403235 OR2AO1P - - HGNC:31247 7 7q35 olfactory receptor, family 2, subfamily AO, member 1 pseudogene pseudo OR2AO1P olfactory receptor, family 2, subfamily AO, member 1 pseudogene O - 20121230 -9606 403236 OR2AS2P - - HGNC:31248 1 1q44 olfactory receptor, family 2, subfamily AS, member 2 pseudogene pseudo OR2AS2P olfactory receptor, family 2, subfamily AS, member 2 pseudogene O - 20121230 -9606 403238 OR2BH1P - - HGNC:31250 11 11p14.1 olfactory receptor, family 2, subfamily BH, member 1 pseudogene pseudo OR2BH1P olfactory receptor, family 2, subfamily BH, member 1 pseudogene O - 20121230 -9606 403239 OR2T27 - - HGNC:31252|Ensembl:ENSG00000187701|HPRD:14952|Vega:OTTHUMG00000040376 1 1q44 olfactory receptor, family 2, subfamily T, member 27 protein-coding OR2T27 olfactory receptor, family 2, subfamily T, member 27 O olfactory receptor 2T27|olfactory receptor OR1-67 20121230 -9606 403241 OR2T32P - - HGNC:31254 1 1q44 olfactory receptor, family 2, subfamily T, member 32 pseudogene pseudo OR2T32P olfactory receptor, family 2, subfamily T, member 32 pseudogene O - 20121230 -9606 403244 OR2T35 - - HGNC:31257|Ensembl:ENSG00000177151|HPRD:17709|Vega:OTTHUMG00000040380 1 1q44 olfactory receptor, family 2, subfamily T, member 35 protein-coding OR2T35 olfactory receptor, family 2, subfamily T, member 35 O olfactory receptor 2T35|olfactory receptor OR1-66 20121230 -9606 403245 OR2X1P - - HGNC:31258 1 1q44 olfactory receptor, family 2, subfamily X, member 1 pseudogene pseudo OR2X1P olfactory receptor, family 2, subfamily X, member 1 pseudogene O - 20121230 -9606 403247 OR4A41P - - HGNC:31260 11 11p11.2 olfactory receptor, family 4, subfamily A, member 41 pseudogene pseudo OR4A41P olfactory receptor, family 4, subfamily A, member 41 pseudogene O - 20121230 -9606 403248 OR4A42P - - HGNC:31261 11 11p11.2 olfactory receptor, family 4, subfamily A, member 42 pseudogene pseudo OR4A42P olfactory receptor, family 4, subfamily A, member 42 pseudogene O - 20121230 -9606 403250 OR4A44P - - HGNC:31263 11 11p11.2 olfactory receptor, family 4, subfamily A, member 44 pseudogene pseudo OR4A44P olfactory receptor, family 4, subfamily A, member 44 pseudogene O - 20121230 -9606 403251 OR4A45P - - HGNC:31264 11 11p11.2 olfactory receptor, family 4, subfamily A, member 45 pseudogene pseudo OR4A45P olfactory receptor, family 4, subfamily A, member 45 pseudogene O - 20121230 -9606 403252 OR4A46P - - HGNC:31265 11 11p11.2 olfactory receptor, family 4, subfamily A, member 46 pseudogene pseudo OR4A46P olfactory receptor, family 4, subfamily A, member 46 pseudogene O - 20121230 -9606 403253 OR4A47 - OR11-113 HGNC:31266|Ensembl:ENSG00000237388|HPRD:17718|Vega:OTTHUMG00000166581 11 11p11.2 olfactory receptor, family 4, subfamily A, member 47 protein-coding OR4A47 olfactory receptor, family 4, subfamily A, member 47 O olfactory receptor 4A47|olfactory receptor OR11-113 20121230 -9606 403254 OR4A48P - - HGNC:31267 11 11p11.2 olfactory receptor, family 4, subfamily A, member 48 pseudogene pseudo OR4A48P olfactory receptor, family 4, subfamily A, member 48 pseudogene O - 20121230 -9606 403255 OR4A49P - - HGNC:31268 11 11p11.12 olfactory receptor, family 4, subfamily A, member 49 pseudogene pseudo OR4A49P olfactory receptor, family 4, subfamily A, member 49 pseudogene O - 20121230 -9606 403256 OR4A50P - - HGNC:31269 11 11q11 olfactory receptor, family 4, subfamily A, member 50 pseudogene pseudo OR4A50P olfactory receptor, family 4, subfamily A, member 50 pseudogene O - 20121230 -9606 403257 OR4C45 - - HGNC:31270|HPRD:17723 11 11p11.12 olfactory receptor, family 4, subfamily C, member 45 protein-coding OR4C45 olfactory receptor, family 4, subfamily C, member 45 O olfactory receptor 4C45 20121230 -9606 403259 OR4C48P - - HGNC:31272 11 - olfactory receptor, family 4, subfamily C, member 48 pseudogene pseudo OR4C48P olfactory receptor, family 4, subfamily C, member 48 pseudogene O - 20121230 -9606 403260 OR4C49P - - HGNC:31273 11 - olfactory receptor, family 4, subfamily C, member 49 pseudogene pseudo OR4C49P olfactory receptor, family 4, subfamily C, member 49 pseudogene O - 20121230 -9606 403263 OR4G11P - - HGNC:31276 1 1p36.33 olfactory receptor, family 4, subfamily G, member 11 pseudogene pseudo OR4G11P olfactory receptor, family 4, subfamily G, member 11 pseudogene O - 20121230 -9606 403264 OR4X7P - - HGNC:31277 11 11q11 olfactory receptor, family 4, subfamily X, member 7 pseudogene pseudo OR4X7P olfactory receptor, family 4, subfamily X, member 7 pseudogene O - 20121230 -9606 403265 OR51AB1P - - HGNC:31278 11 11p15.4 olfactory receptor, family 51, subfamily AB, member 1 pseudogene pseudo OR51AB1P olfactory receptor, family 51, subfamily AB, member 1 pseudogene O - 20121230 -9606 403266 OR51B8P - - HGNC:31279 11 11p15.4 olfactory receptor, family 51, subfamily B, member 8 pseudogene pseudo OR51B8P olfactory receptor, family 51, subfamily B, member 8 pseudogene O - 20121230 -9606 403271 OR5AC4P - - HGNC:31284 3 3q11.2 olfactory receptor, family 5, subfamily AC, member 4 pseudogene pseudo OR5AC4P olfactory receptor, family 5, subfamily AC, member 4 pseudogene O - 20121230 -9606 403272 OR5AO1P - - HGNC:31285 11 11q olfactory receptor, family 5, subfamily AO, member 1 pseudogene pseudo OR5AO1P olfactory receptor, family 5, subfamily AO, member 1 pseudogene O - 20121230 -9606 403273 OR5H14 - - HGNC:31286|Ensembl:ENSG00000236032|HPRD:15041|Vega:OTTHUMG00000160079 3 3q12.1 olfactory receptor, family 5, subfamily H, member 14 protein-coding OR5H14 olfactory receptor, family 5, subfamily H, member 14 O olfactory receptor 5H14|seven transmembrane helix receptor 20121230 -9606 403274 OR5H15 - - HGNC:31287|Ensembl:ENSG00000233412|HPRD:17760|Vega:OTTHUMG00000160076 3 3q12.1 olfactory receptor, family 5, subfamily H, member 15 protein-coding OR5H15 olfactory receptor, family 5, subfamily H, member 15 O olfactory receptor 5H15 20121230 -9606 403275 OR9S24P - OR5J6P HGNC:31288 2 2q37.3 olfactory receptor, family 9, subfamily S, member 24 pseudogene pseudo OR9S24P olfactory receptor, family 9, subfamily S, member 24 pseudogene O - 20121230 -9606 403276 OR5J7P - - HGNC:31289 11 11q olfactory receptor, family 5, subfamily J, member 7 pseudogene pseudo OR5J7P olfactory receptor, family 5, subfamily J, member 7 pseudogene O - 20121230 -9606 403277 OR5K3 - - HGNC:31290|Ensembl:ENSG00000206536|HPRD:17763|Vega:OTTHUMG00000160077 3 3q12.1 olfactory receptor, family 5, subfamily K, member 3 protein-coding OR5K3 olfactory receptor, family 5, subfamily K, member 3 O olfactory receptor 5K3 20121230 -9606 403278 OR5K4 - - HGNC:31291|Ensembl:ENSG00000196098|HPRD:17764|Vega:OTTHUMG00000160081 3 3q12.1 olfactory receptor, family 5, subfamily K, member 4 protein-coding OR5K4 olfactory receptor, family 5, subfamily K, member 4 O olfactory receptor 5K4 20121230 -9606 403281 OR6C64P - - HGNC:31294 12 12q13.2 olfactory receptor, family 6, subfamily C, member 64 pseudogene pseudo OR6C64P olfactory receptor, family 6, subfamily C, member 64 pseudogene O - 20121230 -9606 403282 OR6C65 - - HGNC:31295|Ensembl:ENSG00000205328|HPRD:15058|Vega:OTTHUMG00000169955 12 12q13.2 olfactory receptor, family 6, subfamily C, member 65 protein-coding OR6C65 olfactory receptor, family 6, subfamily C, member 65 O olfactory receptor 6C65 20121230 -9606 403283 OR6C66P - - HGNC:31296 12 12q13.2 olfactory receptor, family 6, subfamily C, member 66 pseudogene pseudo OR6C66P olfactory receptor, family 6, subfamily C, member 66 pseudogene O - 20121230 -9606 403284 OR6C68 - - HGNC:31297|Ensembl:ENSG00000205327|HPRD:17776|Vega:OTTHUMG00000169958 12 12q13.2 olfactory receptor, family 6, subfamily C, member 68 protein-coding OR6C68 olfactory receptor, family 6, subfamily C, member 68 O olfactory receptor 6C68 20121230 -9606 403285 OR6C69P - - HGNC:31298 12 12q13.2 olfactory receptor, family 6, subfamily C, member 69 pseudogene pseudo OR6C69P olfactory receptor, family 6, subfamily C, member 69 pseudogene O - 20121230 -9606 403288 OR6C72P - - HGNC:31301 12 12q13.2 olfactory receptor, family 6, subfamily C, member 72 pseudogene pseudo OR6C72P olfactory receptor, family 6, subfamily C, member 72 pseudogene O - 20121230 -9606 403289 OR6C73P - - HGNC:31302 12 12q13.2 olfactory receptor, family 6, subfamily C, member 73 pseudogene pseudo OR6C73P olfactory receptor, family 6, subfamily C, member 73 pseudogene O - 20121230 -9606 403294 OR6R2P - - HGNC:31307 8 8p21.3 olfactory receptor, family 6, subfamily R, member 2 pseudogene pseudo OR6R2P olfactory receptor, family 6, subfamily R, member 2 pseudogene O - 20121230 -9606 403295 OR7D11P - - HGNC:31308 19 19p13.2 olfactory receptor, family 7, subfamily D, member 11 pseudogene pseudo OR7D11P olfactory receptor, family 7, subfamily D, member 11 pseudogene O - 20121230 -9606 403296 OR7E154P - - HGNC:31309 8 8p23 olfactory receptor, family 7, subfamily E, member 154 pseudogene pseudo OR7E154P olfactory receptor, family 7, subfamily E, member 154 pseudogene O - 20121230 -9606 403297 OR7E155P - - HGNC:31310 13 13q14.11 olfactory receptor, family 7, subfamily E, member 155 pseudogene pseudo OR7E155P olfactory receptor, family 7, subfamily E, member 155 pseudogene O - 20121230 -9606 403299 OR7E159P - - HGNC:31312 14 14q22.1 olfactory receptor, family 7, subfamily E, member 159 pseudogene pseudo OR7E159P olfactory receptor, family 7, subfamily E, member 159 pseudogene O - 20121230 -9606 403300 OR7G15P - - HGNC:31313 19 19p13.2 olfactory receptor, family 7, subfamily G, member 15 pseudogene pseudo OR7G15P olfactory receptor, family 7, subfamily G, member 15 pseudogene O - 20121230 -9606 403301 OR7H2P - - HGNC:31314 5 5q21.1 olfactory receptor, family 7, subfamily H, member 2 pseudogene pseudo OR7H2P olfactory receptor, family 7, subfamily H, member 2 pseudogene O - 20121230 -9606 403302 OR8A3P - - HGNC:31315 11 11q olfactory receptor, family 8, subfamily A, member 3 pseudogene pseudo OR8A3P olfactory receptor, family 8, subfamily A, member 3 pseudogene O - 20121230 -9606 403303 OR8I4P - - HGNC:31316 11 11q12.1 olfactory receptor, family 8, subfamily I, member 4 pseudogene pseudo OR8I4P olfactory receptor, family 8, subfamily I, member 4 pseudogene O - 20121230 -9606 403304 OR8S21P - - HGNC:31317 12 12q13.11 olfactory receptor, family 8, subfamily S, member 21 pseudogene pseudo OR8S21P olfactory receptor, family 8, subfamily S, member 21 pseudogene O - 20121230 -9606 403305 OR8X1P - - HGNC:31318 11 11q24.2 olfactory receptor, family 8, subfamily X, member 1 pseudogene pseudo OR8X1P olfactory receptor, family 8, subfamily X, member 1 pseudogene O - 20121230 -9606 403312 MGC39545 - - HPRD:17540 11 11q24.2 uncharacterized LOC403312 unknown - - - - 20121230 -9606 403313 PPAPDC2 RP11-6J24.2 PDP1|PSDP|bA6J24.6 HGNC:23682|MIM:611666|Ensembl:ENSG00000205808|HPRD:17397|Vega:OTTHUMG00000019466 9 9p24.1 phosphatidic acid phosphatase type 2 domain containing 2 protein-coding PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2 O PPAP2 domain-containing protein 2|phosphatidic acid phosphatase type 2 domain-containing protein 2|polyisoprenoid diphosphate phosphatase type 1|presqualene diphosphate phosphatase 20121230 -9606 403314 APOBEC4 - C1orf169 HGNC:32152|MIM:609908|Ensembl:ENSG00000173627|HPRD:17522|Vega:OTTHUMG00000035459 1 1q25.3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) protein-coding APOBEC4 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) O apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 4|putative C->U-editing enzyme APOBEC-4 20121230 -9606 403315 FAM92A1P2 - FAM92A3 HGNC:32287 4 4q35.1 family with sequence similarity 92, member A3 pseudo FAM92A1P2 family with sequence similarity 92, member A1 pseudogene 2 O - 20121230 -9606 403323 FLJ20444 - - HPRD:16916 9 9q21 uncharacterized protein FLJ20444 unknown - - - - 20121209 -9606 403339 DEFB133 - - HGNC:31331|Ensembl:ENSG00000214643 6 6p12.3 defensin, beta 133 protein-coding DEFB133 defensin, beta 133 O beta-defensin 133 20121230 -9606 403340 MGC70870 - - HPRD:14702 17 - C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 403341 ZBTB34 - RP11-106H5.1|ZNF918 HGNC:31446|MIM:611692|Ensembl:ENSG00000177125|Vega:OTTHUMG00000020694 9 9q33.3 zinc finger and BTB domain containing 34 protein-coding ZBTB34 zinc finger and BTB domain containing 34 O zinc finger and BTB domain-containing protein 34 20121230 -9606 404024 TRIM26BP - TRIM26P|TRIM26P1 HGNC:31338 6 6p21 tripartite motif containing 26B, pseudogene pseudo TRIM26BP tripartite motif containing 26B, pseudogene O - 20121230 -9606 404026 MTCO3P1 - U92032.1 HGNC:31342 6 6p21.3 MT-CO3 pseudogene 1 pseudo MTCO3P1 MT-CO3 pseudogene 1 O - 20121230 -9606 404037 HAPLN4 - BRAL2 HGNC:31357|Ensembl:ENSG00000187664|HPRD:13630|Vega:OTTHUMG00000182221 19 19p13.1 hyaluronan and proteoglycan link protein 4 protein-coding HAPLN4 hyaluronan and proteoglycan link protein 4 O brain link protein 2 20121230 -9606 404093 CUEDC1 - - HGNC:31350|Ensembl:ENSG00000180891|HPRD:13098|Vega:OTTHUMG00000178775 17 17q23.2 CUE domain containing 1 protein-coding CUEDC1 CUE domain containing 1 O CUE domain-containing protein 1 20121230 -9606 404199 PPIHP2 - - HGNC:31356 X Xq23 peptidylprolyl isomerase H (cyclophilin H) pseudogene 2 pseudo PPIHP2 peptidylprolyl isomerase H (cyclophilin H) pseudogene 2 O - 20121230 -9606 404201 WDFY3-AS2 - C4orf12|FBI4|NCRNA00247 HGNC:21603|HPRD:13317 4 4q21.3 WDFY3 antisense RNA 2 miscRNA WDFY3-AS2 WDFY3 antisense RNA 2 O - 20121230 -9606 404203 SPINK6 UNQ844/PRO1782 BUSI2|UNQ844 HGNC:29486|Ensembl:ENSG00000178172|HPRD:15439|Vega:OTTHUMG00000163425 5 5q32 serine peptidase inhibitor, Kazal type 6 protein-coding SPINK6 serine peptidase inhibitor, Kazal type 6 O acrosin inhibitor|kallikrein inhibitor|protease inhibitor H|serine protease inhibitor Kazal-type 6 20121230 -9606 404204 UGT1A13P - - HGNC:32191|Ensembl:ENSG00000234143 2 2q37 UDP glucuronosyltransferase 1 family, polypeptide A13 pseudogene pseudo UGT1A13P UDP glucuronosyltransferase 1 family, polypeptide A13 pseudogene O - 20121230 -9606 404216 C10orf85 - - HGNC:31365|HPRD:18530 10 10q26.12 chromosome 10 open reading frame 85 unknown C10orf85 chromosome 10 open reading frame 85 O - 20121230 -9606 404217 CTXN1 - CTXN HGNC:31108|MIM:600135|Ensembl:ENSG00000178531|HPRD:13097 19 19p13.2 cortexin 1 protein-coding CTXN1 cortexin 1 O cortexin-1 20121230 -9606 404220 C6orf201 RP5-1013A10.5 dJ1013A10.5 HGNC:21620|Ensembl:ENSG00000185689|HPRD:12872|Vega:OTTHUMG00000014160 6 6p25.2 chromosome 6 open reading frame 201 protein-coding C6orf201 chromosome 6 open reading frame 201 O protein MGC87625|uncharacterized protein C6orf201 20121230 -9606 404266 HOXB-AS3 hCG_2042068 - HGNC:40283 17 17q21.32 HOXB cluster antisense RNA 3 miscRNA HOXB-AS3 HOXB cluster antisense RNA 3 O - 20121230 -9606 404281 YY2 - ZNF631 HGNC:31684|MIM:300570|Ensembl:ENSG00000230797|HPRD:15684|Vega:OTTHUMG00000021236 X Xp22.2-p22.1 YY2 transcription factor protein-coding YY2 YY2 transcription factor O transcription factor YY2|transcription factor yin yang 2|yin and yang 2|zinc finger protein 631 20121230 -9606 404542 DFNB50 - - HGNC:31380 12 12q23-qter deafness, autosomal recessive 50 unknown DFNB50 deafness, autosomal recessive 50 O - 20110215 -9606 404544 COX8BP - COX8-1|COX8B|COX8H HGNC:31395 11 11p15.5 cytochrome c oxidase subunit VIIIB, pseudogene pseudo COX8BP cytochrome c oxidase subunit VIIIB, pseudogene O - 20121230 -9606 404550 C16orf74 - - HGNC:23362|Ensembl:ENSG00000154102|HPRD:14460 16 16q24.1 chromosome 16 open reading frame 74 protein-coding C16orf74 chromosome 16 open reading frame 74 O uncharacterized protein C16orf74 20121230 -9606 404551 RWDD1P1 - - HGNC:31055 15 15q25.1 RWD domain containing 1 pseudogene 1 pseudo RWDD1P1 RWD domain containing 1 pseudogene 1 O - 20121230 -9606 404552 SCGB1D4 UNQ517/PRO812 - HGNC:31748|Ensembl:ENSG00000197745|HPRD:15301|Vega:OTTHUMG00000167510 11 11q12.3 secretoglobin, family 1D, member 4 protein-coding SCGB1D4 secretoglobin, family 1D, member 4 O IFN-gamma inducible SCGB (IIS)|IFN-gamma-inducible secretoglobin|IIS|secretoglobin family 1D member 4 20121230 -9606 404635 NANOGP1 - NANOG2 HGNC:23099 12 12p13 Nanog homeobox pseudogene 1 pseudo NANOGP1 Nanog homeobox pseudogene 1 O - 20121230 -9606 404636 FAM45A - - HGNC:31793|Ensembl:ENSG00000119979|HPRD:13310|Vega:OTTHUMG00000019143 10 10q25 family with sequence similarity 45, member A protein-coding FAM45A family with sequence similarity 45, member A O protein FAM45A 20121230 -9606 404663 CT49 - TAG HGNC:37171 5 - cancer/testis antigen 49 (non-protein coding) miscRNA CT49 cancer/testis antigen 49 (non-protein coding) O - 20121230 -9606 404665 CACTIN-AS1 - C19orf29-AS1|C19orf29OS HGNC:31391 19 19p13.3 CACTIN antisense RNA 1 miscRNA CACTIN-AS1 CACTIN antisense RNA 1 O - 20121230 -9606 404672 GTF2H5 - C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTDA|bA120J8.2 HGNC:21157|MIM:608780|Ensembl:ENSG00000185068|HPRD:10581|Vega:OTTHUMG00000015906 6 6q25.3 general transcription factor IIH, polypeptide 5 protein-coding GTF2H5 general transcription factor IIH, polypeptide 5 O TFB5 ortholog|TFIIH basal transcription factor complex TTD-A subunit|TFIIH basal transcription factor complex TTDA subunit|general transcription factor IIH subunit 5 20121230 -9606 404677 CIMT - - MIM:608447 12 12q24 Carotid intimal medial thickness unknown - - - - 20120622 -9606 404679 LGMD1F - - HGNC:33443|MIM:608423 7 7q32.1-q32.2 limb girdle muscular dystrophy 1F (autosomal dominant) unknown LGMD1F limb girdle muscular dystrophy 1F (autosomal dominant) O - 20120622 -9606 404682 MYP5 - - HGNC:35433|MIM:608474 17 17q21-q22 myopia 5 (high grade, autosomal dominant) unknown MYP5 myopia 5 (high grade, autosomal dominant) O - 20120622 -9606 404683 OB4 - - MIM:608410 4 4p15-p14 Obesity, susceptibility to, on chromosome 4 unknown - - - - 20120622 -9606 404684 PHOBS - - MIM:608251 14 - Phobia, specific unknown - - - - 20120622 -9606 404685 RTE1 - - MIM:608045 - - repressor of telomerase expression 1 unknown - - - - 20120622 -9606 404686 SCZD11 - - MIM:608078 10 10q22.3 Schizophrenia susceptibility locus, chromosome 10q-related unknown - - - - 20120622 -9606 404713 SSD - - MIM:608445 3 3p12-q13 Speech-sound disorder unknown - - - - 20120622 -9606 404714 SLEB4 - - MIM:608437 12 12q24 systemic lupus erythematosus, susceptibility to, 4 unknown - - - - 20120622 -9606 404715 PAFC - - MIM:128700 8 8q11.1-q13.3 Preauricular fistulae, congenital unknown - - - - 20110215 -9606 404716 MTBS1 - - MIM:607949 2 2q35 mycobacterium tuberculosis, susceptibility to infection by, 1 unknown - - - - 20120622 -9606 404718 GNRHR2P1 - - HGNC:39424 14 14q23.1 gonadotropin-releasing hormone (type 2) receptor 2 pseudogene 1 pseudo GNRHR2P1 gonadotropin-releasing hormone (type 2) receptor 2 pseudogene 1 O - 20121230 -9606 404719 HSCRM2 - - MIM:608462 9 9q31 Hirschsprung disease modifier 2 unknown - - - - 20120622 -9606 404720 HSCR5 - - MIM:600156 9 9q31 Hirschsprung disease, susceptibility to, 5 unknown - - - - 20120726 -9606 404734 ANKHD1-EIF4EBP3 - MASK-BP3|MASK-BP3ARF HGNC:33530|Ensembl:ENSG00000131503|Ensembl:ENSG00000254996|HPRD:17468|Vega:OTTHUMG00000166212 5 5q31.3 ANKHD1-EIF4EBP3 readthrough protein-coding ANKHD1-EIF4EBP3 ANKHD1-EIF4EBP3 readthrough O ANKHD1-EIF4EBP3 protein|MASK-4E-BP3 alternate reading frame 20121230 -9606 404744 NPSR1-AS1 - AAA1 HGNC:22128|MIM:608596|HPRD:12265 7 7p14.3 NPSR1 antisense RNA 1 miscRNA NPSR1-AS1 NPSR1 antisense RNA 1 O - 20121230 -9606 404766 FABP5P4 - FABP5L4 HGNC:31061 13 13q31.3 fatty acid binding protein 5 pseudogene 4 pseudo FABP5P4 fatty acid binding protein 5 pseudogene 4 O - 20121230 -9606 404770 SPATA31B1 RP11-388B24.2 C9orf36B|FAM75B|bA388B24.2 HGNC:31411 9 9q21.32 SPATA31 subfamily B, member 1 unknown SPATA31B1 SPATA31 subfamily B, member 1 O - 20121230 -9606 404785 POTEG - A26C2|ACTBL1|CT104.4|POTE-14|POTE14|POTE14alpha|POTE22 HGNC:33896|MIM:608916|Ensembl:ENSG00000222036|HPRD:12331|Vega:OTTHUMG00000170340 14 14q11.2 POTE ankyrin domain family, member G protein-coding POTEG POTE ankyrin domain family, member G O ANKRD26-like family C member 2|ANKRD26-like family C, member 2|POTE ankyrin domain family member G|cancer/testis antigen family 104, member 4|prostate, ovary, testis-expressed protein on chromosome 14|protein expressed in prostate, ovary, testis, and placenta 14 20121230 -9606 405753 DUOXA2 - SIMNIPHOM|TDH5 HGNC:32698|MIM:612772|Ensembl:ENSG00000140274|HPRD:14224|Vega:OTTHUMG00000131354 15 15q15.1 dual oxidase maturation factor 2 protein-coding DUOXA2 dual oxidase maturation factor 2 O - 20121230 -9606 405754 ERVFRD-1 UNQ6191/PRO20218 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD HGNC:33823|MIM:610524|Ensembl:ENSG00000244476|HPRD:13648|Vega:OTTHUMG00000159193 6 6p24.1 endogenous retrovirus group FRD, member 1 protein-coding ERVFRD-1 endogenous retrovirus group FRD, member 1 O HERV-FRD provirus ancestral Env polyprotein|HERV-FRD_6p24.1 provirus ancestral Env polyprotein|endogenous retrovirus group FRD member 1|envelope polyprotein|syncytin 2 20121230 -9606 406214 LRSL - - MIM:608545 6 6p25 Larsen-like syndrome unknown - - - - 20120622 -9606 406215 KTCN3 - - MIM:608586 3 3p14-q13 Keratoconus 3 unknown - - - - 20120622 -9606 406216 ATFB1 - - MIM:608583 10 10q22-q24 Atrial fibrillation, familial 1 unknown - - - - 20120622 -9606 406237 PDLA - LAP MIM:608526 1 1q25 Periodontitis, localized aggressive unknown - - - - 20120622 -9606 406238 ALS7 - - HGNC:34539|MIM:608031 20 20p13 amyotrophic lateral sclerosis 7 unknown ALS7 amyotrophic lateral sclerosis 7 O - 20120622 -9606 406874 DYX8 - - HGNC:19951|MIM:608995 1 1p36-p34 dyslexia susceptibility 8 unknown DYX8 dyslexia susceptibility 8 O - 20120622 -9606 406875 FXYD6P3 RP13-216E22.2 FXYD8 HGNC:31124 X Xq13.2 FXYD domain containing ion transport regulator 6 pseudogene 3 pseudo FXYD6P3 FXYD domain containing ion transport regulator 6 pseudogene 3 O - 20121230 -9606 406881 MIRLET7A1 - LET7A1|MIRNLET7A1|let-7a-1 HGNC:31476|MIM:605386|miRBase:MI0000060 9 9q22.32 microRNA let-7a-1 miscRNA MIRLET7A1 microRNA let-7a-1 O - 20121230 -9606 406882 MIRLET7A2 - LET7A2|MIRNLET7A2|let-7a-2 HGNC:31477|MIM:612142|miRBase:MI0000061 11 11q24.1 microRNA let-7a-2 miscRNA MIRLET7A2 microRNA let-7a-2 O - 20121230 -9606 406883 MIRLET7A3 - LET7A3|MIRNLET7A3|let-7a-3 HGNC:31478|MIM:612143|miRBase:MI0000062 22 22q13.31 microRNA let-7a-3 miscRNA MIRLET7A3 microRNA let-7a-3 O - 20121230 -9606 406884 MIRLET7B - LET7B|MIRNLET7B|hsa-let-7b|let-7b HGNC:31479|MIM:611249|miRBase:MI0000063 22 22q13.31 microRNA let-7b miscRNA MIRLET7B microRNA let-7b O - 20121230 -9606 406885 MIRLET7C - LET7C|MIRNLET7C|hsa-let-7c|let-7c HGNC:31480|MIM:612144|miRBase:MI0000064 21 21q21.1 microRNA let-7c miscRNA MIRLET7C microRNA let-7c O - 20121230 -9606 406886 MIRLET7D - LET7D|MIRNLET7D|hsa-let-7d|let-7d HGNC:31481|MIM:612145|miRBase:MI0000065 9 9q22.32 microRNA let-7d miscRNA MIRLET7D microRNA let-7d O - 20121230 -9606 406887 MIRLET7E - MIRNLET7E|hsa-let-7e|let-7e HGNC:31482|MIM:611250|miRBase:MI0000066 19 19q13.41 microRNA let-7e miscRNA MIRLET7E microRNA let-7e O - 20121230 -9606 406888 MIRLET7F1 - LET7F1|MIRNLET7F1|let-7f-1 HGNC:31483|MIM:612146|miRBase:MI0000067 9 9q22.32 microRNA let-7f-1 miscRNA MIRLET7F1 microRNA let-7f-1 O - 20121230 -9606 406889 MIRLET7F2 - LET7F2|MIRNLET7F2|let-7f-2 HGNC:31484|MIM:300721|miRBase:MI0000068 X Xp11.22 microRNA let-7f-2 miscRNA MIRLET7F2 microRNA let-7f-2 O - 20121230 -9606 406890 MIRLET7G - LET7G|MIRNLET7G|hsa-let-7g HGNC:31485|MIM:612102|miRBase:MI0000433 3 3p21.1 microRNA let-7g miscRNA MIRLET7G microRNA let-7g O - 20121230 -9606 406891 MIRLET7I - LET7I|MIRNLET7I|hsa-let-7i HGNC:31486|MIM:612148|miRBase:MI0000434 12 12q14.1 microRNA let-7i miscRNA MIRLET7I microRNA let-7i O - 20121230 -9606 406892 MIR100 - MIRN100|miR-100 HGNC:31487|MIM:613186|miRBase:MI0000102 11 11q24.1 microRNA 100 miscRNA MIR100 microRNA 100 O - 20121230 -9606 406893 MIR101-1 - MIRN101-1 HGNC:31488|MIM:612511|miRBase:MI0000103 1 1p31.3 microRNA 101-1 miscRNA MIR101-1 microRNA 101-1 O - 20121230 -9606 406894 MIR101-2 - MIRN101-2 HGNC:31489|MIM:612512|miRBase:MI0000739 9 9p24.1 microRNA 101-2 miscRNA MIR101-2 microRNA 101-2 O - 20121230 -9606 406895 MIR103A1 - MIR103-1|MIRN103-1 HGNC:31490|MIM:613187|miRBase:MI0000109 5 5q34 microRNA 103a-1 miscRNA MIR103A1 microRNA 103a-1 O - 20121230 -9606 406896 MIR103A2 - MIR103-2|MIRN103-2 HGNC:31491|MIM:613188|miRBase:MI0000108 20 20p13 microRNA 103a-2 miscRNA MIR103A2 microRNA 103a-2 O - 20121230 -9606 406897 MIR105-1 - MIRN105-1 HGNC:31492|MIM:300811|miRBase:MI0000111 X Xq28 microRNA 105-1 miscRNA MIR105-1 microRNA 105-1 O - 20121230 -9606 406898 MIR105-2 - MIRN105-2 HGNC:31493|MIM:300812|miRBase:MI0000112 X Xq28 microRNA 105-2 miscRNA MIR105-2 microRNA 105-2 O - 20121230 -9606 406899 MIR106A - MIRN106A|mir-106 HGNC:31494|MIM:300792|miRBase:MI0000113 X Xq26.2 microRNA 106a miscRNA MIR106A microRNA 106a O - 20121230 -9606 406900 MIR106B - MIRN106B HGNC:31495|MIM:612983|miRBase:MI0000734 7 7q22.1 microRNA 106b miscRNA MIR106B microRNA 106b O - 20121230 -9606 406901 MIR107 - MIRN107|miR-107 HGNC:31496|MIM:613189|miRBase:MI0000114 10 10q23.31 microRNA 107 miscRNA MIR107 microRNA 107 O - 20121230 -9606 406902 MIR10A - MIRN10A|hsa-mir-10a|miRNA10A|mir-10a HGNC:31497|MIM:610173|miRBase:MI0000266 17 17q21.32 microRNA 10a miscRNA MIR10A microRNA 10a O - 20121230 -9606 406903 MIR10B - MIRN10B|hsa-mir-10b|miRNA10B|mir-10b HGNC:31498|MIM:611576|miRBase:MI0000267 2 2q31.1 microRNA 10b miscRNA MIR10B microRNA 10b O - 20121230 -9606 406904 MIR1-1 - MIRN1-1|hsa-mir-1-1|miRNA1-1 HGNC:31499|MIM:609326|miRBase:MI0000651 20 20q13.33 microRNA 1-1 miscRNA MIR1-1 microRNA 1-1 O - 20121230 -9606 406905 MIR1-2 - MIRN1-2|hsa-mir-1-2|miRNA1-2 HGNC:31500|MIM:610252|miRBase:MI0000437 18 18q11.2 microRNA 1-2 miscRNA MIR1-2 microRNA 1-2 O - 20121230 -9606 406906 MIR122 - MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A HGNC:31501|MIM:609582|miRBase:MI0000442 18 18q21.31 microRNA 122 miscRNA MIR122 microRNA 122 O - 20121230 -9606 406907 MIR124-1 - MIR124A|MIR124A1|MIRN124-1|MIRN124A1 HGNC:31502|MIM:609327|miRBase:MI0000443 8 8p23.1 microRNA 124-1 miscRNA MIR124-1 microRNA 124-1 O - 20121230 -9606 406908 MIR124-2 - MIRN124-2|MIRN124A2 HGNC:31503|miRBase:MI0000444 8 8q12.3 microRNA 124-2 miscRNA MIR124-2 microRNA 124-2 O - 20121230 -9606 406909 MIR124-3 - MIRN124-3|MIRN124A3 HGNC:31504|miRBase:MI0000445 20 20q13.33 microRNA 124-3 miscRNA MIR124-3 microRNA 124-3 O - 20121230 -9606 406910 MIR125A - MIRN125A|miRNA125A HGNC:31505|MIM:611191|miRBase:MI0000469 19 19q13.41 microRNA 125a miscRNA MIR125A microRNA 125a O - 20121230 -9606 406911 MIR125B1 - MIRN125B1 HGNC:31506|MIM:610104|miRBase:MI0000446 11 11q24.1 microRNA 125b-1 miscRNA MIR125B1 microRNA 125b-1 O - 20121230 -9606 406912 MIR125B2 - MIRN125B2 HGNC:31507|MIM:610105|miRBase:MI0000470 21 21q21.1 microRNA 125b-2 miscRNA MIR125B2 microRNA 125b-2 O - 20121230 -9606 406913 MIR126 - MIRN126|miRNA126 HGNC:31508|MIM:611767|miRBase:MI0000471 9 9q34.3 microRNA 126 miscRNA MIR126 microRNA 126 O - 20121230 -9606 406914 MIR127 - MIRN127|miRNA127 HGNC:31509|MIM:611709|miRBase:MI0000472 14 14q32.2 microRNA 127 miscRNA MIR127 microRNA 127 O - 20121230 -9606 406915 MIR128-1 - MIR128A|MIRN128-1|MIRN128A HGNC:31510|MIM:611774|miRBase:MI0000447 2 2q21.3 microRNA 128-1 miscRNA MIR128-1 microRNA 128-1 O - 20121230 -9606 406916 MIR128-2 - MIR128B|MIRN128-2|MIRN128B|mir-128b HGNC:31511|MIM:611769|miRBase:MI0000727 3 3p22.3 microRNA 128-2 miscRNA MIR128-2 microRNA 128-2 O - 20121230 -9606 406917 MIR129-1 - MIR-129b|MIRN129-1 HGNC:31512|miRBase:MI0000252 7 7q32.1 microRNA 129-1 miscRNA MIR129-1 microRNA 129-1 O - 20121230 -9606 406918 MIR129-2 - MIR-129b|MIRN129-2|mir-129-2 HGNC:31513|miRBase:MI0000473 11 11p11.2 microRNA 129-2 miscRNA MIR129-2 microRNA 129-2 O - 20121230 -9606 406919 MIR130A - MIRN130A|miRNA130A HGNC:31514|MIM:610175|miRBase:MI0000448 11 11q12.1 microRNA 130a miscRNA MIR130A microRNA 130a O - 20121230 -9606 406920 MIR130B - MIRN130B|mir-130b HGNC:31515|MIM:613682|miRBase:MI0000748 22 - microRNA 130b miscRNA MIR130B microRNA 130b O - 20121230 -9606 406921 MIR132 - MIRN132|miRNA132 HGNC:31516|MIM:610016|miRBase:MI0000449 17 17p13.3 microRNA 132 miscRNA MIR132 microRNA 132 O - 20121230 -9606 406922 MIR133A1 - MIRN133A1 HGNC:31517|MIM:610254|miRBase:MI0000450 18 18q11.2 microRNA 133a-1 miscRNA MIR133A1 microRNA 133a-1 O - 20121230 -9606 406923 MIR133A2 - MIRN133A2 HGNC:31518|MIM:610255|miRBase:MI0000451 20 20q13.33 microRNA 133a-2 miscRNA MIR133A2 microRNA 133a-2 O - 20121230 -9606 406924 MIR134 - MIRN134 HGNC:31519|MIM:610164|miRBase:MI0000474 14 14q32.31 microRNA 134 miscRNA MIR134 microRNA 134 O - 20121230 -9606 406925 MIR135A1 - MIRN135-1|MIRN135A1 HGNC:31520|miRBase:MI0000452 3 3p21.1 microRNA 135a-1 miscRNA MIR135A1 microRNA 135a-1 O - 20121230 -9606 406926 MIR135A2 - MIRN135-2|MIRN135A2 HGNC:31521|miRBase:MI0000453 12 12q23.1 microRNA 135a-2 miscRNA MIR135A2 microRNA 135a-2 O - 20121230 -9606 406927 MIR136 - MIRN136|miRNA136 HGNC:31522|MIM:611710|miRBase:MI0000475 14 14q32.2 microRNA 136 miscRNA MIR136 microRNA 136 O - 20121230 -9606 406928 MIR137 - MIRN137|miR-137 HGNC:31523|MIM:614304|miRBase:MI0000454 1 1p21.3 microRNA 137 miscRNA MIR137 microRNA 137 O - 20121230 -9606 406929 MIR138-1 - MIRN138-1 HGNC:31524|MIM:613394|miRBase:MI0000476 3 3p21.32 microRNA 138-1 miscRNA MIR138-1 microRNA 138-1 O - 20121230 -9606 406930 MIR138-2 - MIRN138-2 HGNC:31525|MIM:613395|miRBase:MI0000455 16 16q13 microRNA 138-2 miscRNA MIR138-2 microRNA 138-2 O - 20121230 -9606 406931 MIR139 - MIRN139 HGNC:31526|miRBase:MI0000261 11 11q13.4 microRNA 139 miscRNA MIR139 microRNA 139 O - 20121230 -9606 406932 MIR140 - MIRN140|miRNA140 HGNC:31527|MIM:611894|miRBase:MI0000456 16 16q22.1 microRNA 140 miscRNA MIR140 microRNA 140 O - 20121230 -9606 406933 MIR141 - MIRN141 HGNC:31528|MIM:612093|miRBase:MI0000457 12 12p13.31 microRNA 141 miscRNA MIR141 microRNA 141 O - 20121230 -9606 406934 MIR142 - MIRN142 HGNC:31529|miRBase:MI0000458 17 17q22 microRNA 142 miscRNA MIR142 microRNA 142 O - 20121230 -9606 406935 MIR143 - MIRN143 HGNC:31530|MIM:612117|miRBase:MI0000459 5 5q32 microRNA 143 miscRNA MIR143 microRNA 143 O - 20121230 -9606 406936 MIR144 - MIRN144 HGNC:31531|MIM:612070|miRBase:MI0000460 17 17q11.2 microRNA 144 miscRNA MIR144 microRNA 144 O - 20121230 -9606 406937 MIR145 - MIRN145|miR-145|miRNA145 HGNC:31532|MIM:611795|miRBase:MI0000461 5 5q32 microRNA 145 miscRNA MIR145 microRNA 145 O - 20121230 -9606 406938 MIR146A - MIRN146|MIRN146A|miR-146a|miRNA146A HGNC:31533|MIM:610566|miRBase:MI0000477 5 5q34 microRNA 146a miscRNA MIR146A microRNA 146a O - 20121230 -9606 406939 MIR147A - MIR147|MIRN147|hsa-mir-147a HGNC:31534|miRBase:MI0000262 9 9q33.2 microRNA 147a miscRNA MIR147A microRNA 147a O - 20121230 -9606 406940 MIR148A - MIRN148|MIRN148A|hsa-mir-148 HGNC:31535|MIM:613786|miRBase:MI0000253 7 7p15.2 microRNA 148a miscRNA MIR148A microRNA 148a O - 20121230 -9606 406941 MIR149 - MIRN149 HGNC:31536|miRBase:MI0000478 2 2q37.3 microRNA 149 miscRNA MIR149 microRNA 149 O - 20121230 -9606 406942 MIR150 - MIRN150|miRNA150 HGNC:31537|MIM:611114|miRBase:MI0000479 19 19q13.33 microRNA 150 miscRNA MIR150 microRNA 150 O - 20121230 -9606 406943 MIR152 - MIRN152 HGNC:31538|MIM:613788|miRBase:MI0000462 17 17q21.32 microRNA 152 miscRNA MIR152 microRNA 152 O - 20121230 -9606 406944 MIR153-1 - MIRN153-1 HGNC:31539|miRBase:MI0000463 2 2q35 microRNA 153-1 miscRNA MIR153-1 microRNA 153-1 O - 20121230 -9606 406945 MIR153-2 - MIRN153-2 HGNC:31540|miRBase:MI0000464 7 7q36.3 microRNA 153-2 miscRNA MIR153-2 microRNA 153-2 O - 20121230 -9606 406946 MIR154 - MIRN154 HGNC:31541|miRBase:MI0000480 14 14q32.31 microRNA 154 miscRNA MIR154 microRNA 154 O - 20121230 -9606 406947 MIR155 - MIRN155|miRNA155 HGNC:31542|MIM:609337|miRBase:MI0000681 21 21q21.3 microRNA 155 miscRNA MIR155 microRNA 155 O - 20121230 -9606 406948 MIR15A - MIRN15A|hsa-mir-15a|miRNA15A HGNC:31543|MIM:609703|miRBase:MI0000069 13 13q14.2 microRNA 15a miscRNA MIR15A microRNA 15a O - 20121230 -9606 406949 MIR15B - MIRN15B|hsa-mir-15b|miR-15b HGNC:31544|miRBase:MI0000438 3 3q25.33 microRNA 15b miscRNA MIR15B microRNA 15b O - 20121230 -9606 406950 MIR16-1 - MIRN16-1|miRNA16-1 HGNC:31545|MIM:609704|miRBase:MI0000070 13 13q14.2 microRNA 16-1 miscRNA MIR16-1 microRNA 16-1 O - 20121230 -9606 406951 MIR16-2 - MIRN16-2|mir-16-3 HGNC:31546|miRBase:MI0000115 3 3q25.33 microRNA 16-2 miscRNA MIR16-2 microRNA 16-2 O - 20121230 -9606 406952 MIR17 - MIR17-5p|MIR91|MIRN17|MIRN91|hsa-mir-17|miR-17|miR17-3p|miRNA17|miRNA91 HGNC:31547|MIM:609416|miRBase:MI0000071 13 13q31.3 microRNA 17 miscRNA MIR17 microRNA 17 O - 20121230 -9606 406953 MIR18A - MIR18|MIRN18|MIRN18A|hsa-mir-18|hsa-mir-18a|miR-18|miRNA18A HGNC:31548|MIM:609417|miRBase:MI0000072 13 13q31.3 microRNA 18a miscRNA MIR18A microRNA 18a O - 20121230 -9606 406954 MIR181A2 - MIRN181A|MIRN181A2|hsa-mir-181a-2 HGNC:31549|MIM:612743|miRBase:MI0000269 9 9q33.3 microRNA 181a-2 miscRNA MIR181A2 microRNA 181a-2 O - 20121230 -9606 406955 MIR181B1 - MIRN181B1 HGNC:31550|MIM:612744|miRBase:MI0000270 1 1q32.1 microRNA 181b-1 miscRNA MIR181B1 microRNA 181b-1 O - 20121230 -9606 406956 MIR181B2 - MIRN181B2 HGNC:31551|MIM:612745|miRBase:MI0000683 9 9q33.3 microRNA 181b-2 miscRNA MIR181B2 microRNA 181b-2 O - 20121230 -9606 406957 MIR181C - MIRN181C|mir-181c HGNC:31552|MIM:612746|miRBase:MI0000271 19 19p13.13 microRNA 181c miscRNA MIR181C microRNA 181c O - 20121230 -9606 406958 MIR182 - MIRN182|miRNA182 HGNC:31553|MIM:611607|miRBase:MI0000272 7 7q32.2 microRNA 182 miscRNA MIR182 microRNA 182 O - 20121230 -9606 406959 MIR183 - MIRN183|miR-183|miRNA183 HGNC:31554|MIM:611608|miRBase:MI0000273 7 7q32.2 microRNA 183 miscRNA MIR183 microRNA 183 O - 20121230 -9606 406960 MIR184 - EDICT|MIRN184|miR-184 HGNC:31555|MIM:613146|miRBase:MI0000481 15 15q25.1 microRNA 184 miscRNA MIR184 microRNA 184 O - 20121230 -9606 406961 MIR185 - MIRN185|miR-185 HGNC:31556|miRBase:MI0000482 22 22q11.21 microRNA 185 miscRNA MIR185 microRNA 185 O - 20121230 -9606 406962 MIR186 - MIRN186|miR-186 HGNC:31557|miRBase:MI0000483 1 1p31.1 microRNA 186 miscRNA MIR186 microRNA 186 O - 20121230 -9606 406963 MIR187 - MIRN187|miR-187|miRNA187 HGNC:31558|MIM:612698|miRBase:MI0000274 18 18q12.2 microRNA 187 miscRNA MIR187 microRNA 187 O - 20121230 -9606 406964 MIR188 - MIRN188|miR-188 HGNC:31559|miRBase:MI0000484 X Xp11.23 microRNA 188 miscRNA MIR188 microRNA 188 O - 20121230 -9606 406965 MIR190A - MIR190|MIRN190|hsa-mir-190a|miR-190 HGNC:31560|miRBase:MI0000486 15 15q22.2 microRNA 190a miscRNA MIR190A microRNA 190a O - 20121230 -9606 406966 MIR191 - MIRN191|miR-191 HGNC:31561|miRBase:MI0000465 3 3p21.31 microRNA 191 miscRNA MIR191 microRNA 191 O - 20121230 -9606 406967 MIR192 - MIRN192|miR-192|miRNA192 HGNC:31562|MIM:610939|miRBase:MI0000234 11 11q13.1 microRNA 192 miscRNA MIR192 microRNA 192 O - 20121230 -9606 406968 MIR193A - MIRN193|MIRN193A HGNC:31563|MIM:614733|miRBase:MI0000487 17 17q11.2 microRNA 193a miscRNA MIR193A microRNA 193a O - 20121230 -9606 406969 MIR194-1 - MIRN194-1 HGNC:31564|MIM:610940|miRBase:MI0000488 1 1q41 microRNA 194-1 miscRNA MIR194-1 microRNA 194-1 O - 20121230 -9606 406970 MIR194-2 - MIRN194-2 HGNC:31565|MIM:610941|miRBase:MI0000732 11 11q13.1 microRNA 194-2 miscRNA MIR194-2 microRNA 194-2 O - 20121230 -9606 406971 MIR195 - MIRN195|miRNA195 HGNC:31566|MIM:610718|miRBase:MI0000489 17 17p13.1 microRNA 195 miscRNA MIR195 microRNA 195 O - 20121230 -9606 406972 MIR196A1 - MIRN196-1|MIRN196A1 HGNC:31567|MIM:608632|miRBase:MI0000238 17 17q21.32 microRNA 196a-1 miscRNA MIR196A1 microRNA 196a-1 O - 20121230 -9606 406973 MIR196A2 - MIRN196-2|MIRN196A2 HGNC:31568|MIM:609687|miRBase:MI0000279 12 12q13.13 microRNA 196a-2 miscRNA MIR196A2 microRNA 196a-2 O - 20121230 -9606 406974 MIR197 - MIRN197|miR-197|miRNA197 HGNC:31569|MIM:611189|miRBase:MI0000239 1 1p13.3 microRNA 197 miscRNA MIR197 microRNA 197 O - 20121230 -9606 406975 MIR198 - MIRN198|miR-198 HGNC:31570|miRBase:MI0000240 3 3q13.33 microRNA 198 miscRNA MIR198 microRNA 198 O - 20121230 -9606 406976 MIR199A1 - MIR-199-s|MIRN199A1 HGNC:31571|MIM:610719|miRBase:MI0000242 19 19p13.2 microRNA 199a-1 miscRNA MIR199A1 microRNA 199a-1 O - 20121230 -9606 406977 MIR199A2 - MIR-199-s|MIRN199A2 HGNC:31572|MIM:610720|miRBase:MI0000281 1 1q24.3 microRNA 199a-2 miscRNA MIR199A2 microRNA 199a-2 O - 20121230 -9606 406978 MIR199B - MIRN199B|mir-199b HGNC:31573|MIM:614791|miRBase:MI0000282 9 9q34.11 microRNA 199b miscRNA MIR199B microRNA 199b O - 20121230 -9606 406979 MIR19A - MIRN19A|hsa-mir-19a|miR-19a|miRNA19A HGNC:31574|MIM:609418|miRBase:MI0000073 13 13q31.3 microRNA 19a miscRNA MIR19A microRNA 19a O - 20121230 -9606 406980 MIR19B1 - MIRN19B1|miR-19b-1|miRNA19B1 HGNC:31575|MIM:609419|miRBase:MI0000074 13 13q31.3 microRNA 19b-1 miscRNA MIR19B1 microRNA 19b-1 O - 20121230 -9606 406981 MIR19B2 - MIRN19B2|miR-19b-2 HGNC:31576|MIM:300722|miRBase:MI0000075 X Xq26.2 microRNA 19b-2 miscRNA MIR19B2 microRNA 19b-2 O - 20121230 -9606 406982 MIR20A - MIR20|MIRN20|MIRN20A|hsa-mir-20|hsa-mir-20a|miR-20|miRNA20A HGNC:31577|MIM:609420|miRBase:MI0000076 13 13q31.3 microRNA 20a miscRNA MIR20A microRNA 20a O - 20121230 -9606 406983 MIR200A - MIRN200A HGNC:31578|MIM:612090|miRBase:MI0000737 1 1p36.33 microRNA 200a miscRNA MIR200A microRNA 200a O - 20121230 -9606 406984 MIR200B - MIRN200B HGNC:31579|MIM:612091|miRBase:MI0000342 1 1p36.33 microRNA 200b miscRNA MIR200B microRNA 200b O - 20121230 -9606 406985 MIR200C - MIRN200C HGNC:31580|MIM:612092|miRBase:MI0000650 12 12p13.31 microRNA 200c miscRNA MIR200C microRNA 200c O - 20121230 -9606 406986 MIR203 - MIRN203|miR-203|miRNA203 HGNC:31581|MIM:611899|miRBase:MI0000283 14 14q32.33 microRNA 203 miscRNA MIR203 microRNA 203 O - 20121230 -9606 406987 MIR204 - MIRN204|miRNA204 HGNC:31582|MIM:610942|miRBase:MI0000284 9 9q21.12 microRNA 204 miscRNA MIR204 microRNA 204 O - 20121230 -9606 406988 MIR205 - MIRN205 HGNC:31583|MIM:613147|miRBase:MI0000285 1 1q32.2 microRNA 205 miscRNA MIR205 microRNA 205 O - 20121230 -9606 406989 MIR206 - MIRN206|miRNA206 HGNC:31584|MIM:611599|miRBase:MI0000490 6 6p12.2 microRNA 206 miscRNA MIR206 microRNA 206 O - 20121230 -9606 406990 MIR208A - MIR208|MIRN208|MIRN208A|hsa-mir-208a|miRNA208 HGNC:31585|MIM:611116|miRBase:MI0000251 14 14q11.2 microRNA 208a miscRNA MIR208A microRNA 208a O - 20121230 -9606 406991 MIR21 - MIRN21|hsa-mir-21|miR-21|miRNA21 HGNC:31586|MIM:611020|miRBase:MI0000077 17 17q23.1 microRNA 21 miscRNA MIR21 microRNA 21 O - 20121230 -9606 406992 MIR210 - MIRN210|mir-210 HGNC:31587|MIM:612982|miRBase:MI0000286 11 11p15.5 microRNA 210 miscRNA MIR210 microRNA 210 O - 20121230 -9606 406993 MIR211 - MIRN211|mir-211 HGNC:31588|MIM:613753|miRBase:MI0000287 15 15q13.3 microRNA 211 miscRNA MIR211 microRNA 211 O - 20121230 -9606 406994 MIR212 - MIRN212|mir-212 HGNC:31589|MIM:613487|miRBase:MI0000288 17 17p13.3 microRNA 212 miscRNA MIR212 microRNA 212 O - 20121230 -9606 406995 MIR181A1 - MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-213 HGNC:31590|MIM:612742|miRBase:MI0000289 1 1q32.1 microRNA 181a-1 miscRNA MIR181A1 microRNA 181a-1 O - 20121230 -9606 406996 MIR214 - MIRN214|miRNA214|mir-214 HGNC:31591|MIM:610721|miRBase:MI0000290 1 1q24.3 microRNA 214 miscRNA MIR214 microRNA 214 O - 20121230 -9606 406997 MIR215 - MIRN215|miRNA215|mir-215 HGNC:31592|MIM:610943|miRBase:MI0000291 1 1q41 microRNA 215 miscRNA MIR215 microRNA 215 O - 20121230 -9606 406998 MIR216A - MIR216|MIRN216|MIRN216A|miRNA216|mir-216 HGNC:31593|MIM:610944|miRBase:MI0000292 2 2p16.1 microRNA 216a miscRNA MIR216A microRNA 216a O - 20121230 -9606 406999 MIR217 - MIRN217|mir-217 HGNC:31594|miRBase:MI0000293 2 2p16.1 microRNA 217 miscRNA MIR217 microRNA 217 O - 20121230 -9606 407000 MIR218-1 - MIRN218-1|mir-218-1 HGNC:31595|miRBase:MI0000294 4 4p15.31 microRNA 218-1 miscRNA MIR218-1 microRNA 218-1 O - 20121230 -9606 407001 MIR218-2 - MIRN218-2|mir-218-2 HGNC:31596|miRBase:MI0000295 5 5q34 microRNA 218-2 miscRNA MIR218-2 microRNA 218-2 O - 20121230 -9606 407002 MIR219-1 - MIRN219-1|MRI219-1|mir-219 HGNC:31597|MIM:611500|miRBase:MI0000296 6 6p21.32 microRNA 219-1 miscRNA MIR219-1 microRNA 219-1 O - 20121230 -9606 407003 MIR219-2 - MIRN219-2 HGNC:31598|miRBase:MI0000740 9 9q34.11 microRNA 219-2 miscRNA MIR219-2 microRNA 219-2 O - 20121230 -9606 407004 MIR22 - MIRN22|hsa-mir-22|miR-22 HGNC:31599|MIM:612077|miRBase:MI0000078 17 17p13.3 microRNA 22 miscRNA MIR22 microRNA 22 O - 20121230 -9606 407006 MIR221 - MIRN221|miRNA221|mir-221 HGNC:31601|MIM:300568|miRBase:MI0000298 X Xp11.3 microRNA 221 miscRNA MIR221 microRNA 221 O - 20121230 -9606 407007 MIR222 - MIRN222|miRNA222|mir-222 HGNC:31602|MIM:300569|miRBase:MI0000299 X Xp11.3 microRNA 222 miscRNA MIR222 microRNA 222 O - 20121230 -9606 407008 MIR223 - MIRN223|miRNA223|mir-223 HGNC:31603|MIM:300694|miRBase:MI0000300 X Xq12 microRNA 223 miscRNA MIR223 microRNA 223 O - 20121230 -9606 407009 MIR224 - MIRN224|miRNA224 HGNC:31604|MIM:300769|miRBase:MI0000301 X Xq28 microRNA 224 miscRNA MIR224 microRNA 224 O - 20121230 -9606 407010 MIR23A - MIRN23A|hsa-mir-23a|miRNA23A HGNC:31605|MIM:607962|miRBase:MI0000079 19 19p13.13 microRNA 23a miscRNA MIR23A microRNA 23a O - 20121230 -9606 407011 MIR23B - MIRN23B|hsa-mir-23b|miRNA23B HGNC:31606|MIM:610723|miRBase:MI0000439 9 9q22.32 microRNA 23b miscRNA MIR23B microRNA 23b O - 20121230 -9606 407012 MIR24-1 - MIR189|MIRN24-1|miR-24-1|miRNA24-1 HGNC:31607|MIM:609705|miRBase:MI0000080 9 9q22.32 microRNA 24-1 miscRNA MIR24-1 microRNA 24-1 O - 20121230 -9606 407013 MIR24-2 - MIRN24-2|miR-24-2|miRNA24-2 HGNC:31608|MIM:610724|miRBase:MI0000081 19 19p13.13 microRNA 24-2 miscRNA MIR24-2 microRNA 24-2 O - 20121230 -9606 407014 MIR25 - MIRN25|hsa-mir-25|miR-25 HGNC:31609|MIM:612150|miRBase:MI0000082 7 7q22.1 microRNA 25 miscRNA MIR25 microRNA 25 O - 20121230 -9606 407015 MIR26A1 - MIR26A|MIRN26A1 HGNC:31610|MIM:612151|miRBase:MI0000083 3 3p22.2 microRNA 26a-1 miscRNA MIR26A1 microRNA 26a-1 O - 20121230 -9606 407016 MIR26A2 - MIRN26A2 HGNC:31611|MIM:613057|miRBase:MI0000750 12 12q14.1 microRNA 26a-2 miscRNA MIR26A2 microRNA 26a-2 O - 20121230 -9606 407017 MIR26B - MIRN26B|hsa-mir-26b|miR-26b HGNC:31612|MIM:612152|miRBase:MI0000084 2 2q35 microRNA 26b miscRNA MIR26B microRNA 26b O - 20121230 -9606 407018 MIR27A - MIR27|MIRN27A HGNC:31613|MIM:612153|miRBase:MI0000085 19 19p13.13 microRNA 27a miscRNA MIR27A microRNA 27a O - 20121230 -9606 407019 MIR27B - MIR-27b|MIRN27B|miRNA27B HGNC:31614|MIM:610636|miRBase:MI0000440 9 9q22.32 microRNA 27b miscRNA MIR27B microRNA 27b O - 20121230 -9606 407020 MIR28 - MIRN28|hsa-mir-28|miR-28 HGNC:31615|MIM:612154|miRBase:MI0000086 3 3q28 microRNA 28 miscRNA MIR28 microRNA 28 O - 20121230 -9606 407021 MIR29A - MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A HGNC:31616|MIM:610782|miRBase:MI0000087 7 7q32.3 microRNA 29a miscRNA MIR29A microRNA 29a O - 20121230 -9606 407022 MIR296 - MIRN296|miRNA296 HGNC:31617|MIM:610945|miRBase:MI0000747 20 20q13.32 microRNA 296 miscRNA MIR296 microRNA 296 O - 20121230 -9606 407023 MIR299 - MIRN299 HGNC:31618|miRBase:MI0000744 14 14q32.31 microRNA 299 miscRNA MIR299 microRNA 299 O - 20121230 -9606 407024 MIR29B1 - MIRN29B1|miRNA29B1 HGNC:31619|MIM:610783|miRBase:MI0000105 7 7q32.3 microRNA 29b-1 miscRNA MIR29B1 microRNA 29b-1 O - 20121230 -9606 407025 MIR29B2 - MIRN29B2|mir-29b-2 HGNC:31620|miRBase:MI0000107 1 1q32.2 microRNA 29b-2 miscRNA MIR29B2 microRNA 29b-2 O - 20121230 -9606 407026 MIR29C - MIRN29C|miRNA29C HGNC:31621|MIM:610784|miRBase:MI0000735 1 1q32.2 microRNA 29c miscRNA MIR29C microRNA 29c O - 20121230 -9606 407027 MIR301A - MIRN301|MIRN301A HGNC:31622|miRBase:MI0000745 17 17q22 microRNA 301a miscRNA MIR301A microRNA 301a O - 20121230 -9606 407028 MIR302A - MIRN302|MIRN302A|hsa-mir-302 HGNC:31623|MIM:614596|miRBase:MI0000738 4 4q25 microRNA 302a miscRNA MIR302A microRNA 302a O - 20121230 -9606 407029 MIR30A - MIRN30A HGNC:31624|MIM:612329|miRBase:MI0000088 6 6q13 microRNA 30a miscRNA MIR30A microRNA 30a O - 20121230 -9606 407030 MIR30B - MIRN30B HGNC:31625|miRBase:MI0000441 8 8q24.22 microRNA 30b miscRNA MIR30B microRNA 30b O - 20121230 -9606 407031 MIR30C1 - MIRN30C1 HGNC:31626|miRBase:MI0000736 1 1p34.2 microRNA 30c-1 miscRNA MIR30C1 microRNA 30c-1 O - 20121230 -9606 407032 MIR30C2 - MIRN30C2 HGNC:31627|miRBase:MI0000254 6 6q13 microRNA 30c-2 miscRNA MIR30C2 microRNA 30c-2 O - 20121230 -9606 407033 MIR30D - MIRN30D HGNC:31628|miRBase:MI0000255 8 8q24.22 microRNA 30d miscRNA MIR30D microRNA 30d O - 20121230 -9606 407034 MIR30E - MIRN30E HGNC:31629|miRBase:MI0000749 1 1p34.2 microRNA 30e miscRNA MIR30E microRNA 30e O - 20121230 -9606 407035 MIR31 - MIRN31|hsa-mir-31|miR-31 HGNC:31630|MIM:612155|miRBase:MI0000089 9 9p21.3 microRNA 31 miscRNA MIR31 microRNA 31 O - 20121230 -9606 407036 MIR32 - MIRN32|hsa-mir-32|miR-32|miRNA32 HGNC:31631|MIM:609355|miRBase:MI0000090 9 9q31.3 microRNA 32 miscRNA MIR32 microRNA 32 O - 20121230 -9606 407037 MIR320A - MIRN320|MIRN320A|hsa-mir-320a HGNC:31632|MIM:614112|miRBase:MI0000542 8 8p21.3 microRNA 320a miscRNA MIR320A microRNA 320a O - 20121230 -9606 407039 MIR33A - MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A HGNC:31634|MIM:612156|miRBase:MI0000091 22 22q13.2 microRNA 33a miscRNA MIR33A microRNA 33a O - 20121230 -9606 407040 MIR34A - MIRN34A|miRNA34A|mir-34 HGNC:31635|MIM:611172|miRBase:MI0000268 1 1p36.22|1p36.22 microRNA 34a miscRNA MIR34A microRNA 34a O - 20121230 -9606 407041 MIR34B - MIRN34B|miRNA34B HGNC:31636|MIM:611374|miRBase:MI0000742 11 11q23.1 microRNA 34b miscRNA MIR34B microRNA 34b O - 20121230 -9606 407042 MIR34C - MIRN34C|miRNA34C HGNC:31637|MIM:611375|miRBase:MI0000743 11 11q23.1 microRNA 34c miscRNA MIR34C microRNA 34c O - 20121230 -9606 407043 MIR7-1 - MIRN7-1|hsa-mir-7-1|mir-7-1 HGNC:31638|miRBase:MI0000263 9 9q21.32 microRNA 7-1 miscRNA MIR7-1 microRNA 7-1 O - 20121230 -9606 407044 MIR7-2 - MIRN7-2|hsa-mir-7-2|mir-7-2 HGNC:31639|miRBase:MI0000264 15 15q26.1 microRNA 7-2 miscRNA MIR7-2 microRNA 7-2 O - 20121230 -9606 407045 MIR7-3 - MIRN7-3|hsa-mir-7-3|mir-7-3 HGNC:31640|miRBase:MI0000265 19 19p13.3 microRNA 7-3 miscRNA MIR7-3 microRNA 7-3 O - 20121230 -9606 407046 MIR9-1 - MIRN9-1|hsa-mir-9-1|miRNA9-1 HGNC:31641|MIM:611186|miRBase:MI0000466 1 1q22 microRNA 9-1 miscRNA MIR9-1 microRNA 9-1 O - 20121230 -9606 407047 MIR9-2 - MIRN9-2|hsa-mir-9-2|miRNA9-2 HGNC:31642|MIM:611187|miRBase:MI0000467 5 5q14.3 microRNA 9-2 miscRNA MIR9-2 microRNA 9-2 O - 20121230 -9606 407048 MIR92A1 - MIR92-1|MIRN92-1|MIRN92A-1|MIRN92A1|miRNA92-1 HGNC:31643|MIM:609422|miRBase:MI0000093 13 13q31.3 microRNA 92a-1 miscRNA MIR92A1 microRNA 92a-1 O - 20121230 -9606 407049 MIR92A2 - MIRN92-2|MIRN92A-2|MIRN92A2 HGNC:31644|miRBase:MI0000094 X Xq26.2 microRNA 92a-2 miscRNA MIR92A2 microRNA 92a-2 O - 20121230 -9606 407050 MIR93 - MIRN9|MIRN93|hsa-mir-93|miR-93 HGNC:31645|MIM:612984|miRBase:MI0000095 7 7q22.1 microRNA 93 miscRNA MIR93 microRNA 93 O - 20121230 -9606 407051 MIR9-3 - MIRN9-3|hsa-mir-9-3|miRNA9-3 HGNC:31646|MIM:611188|miRBase:MI0000468 15 15q26.1 microRNA 9-3 miscRNA MIR9-3 microRNA 9-3 O - 20121230 -9606 407052 MIR95 - MIRN95|hsa-mir-95|miR-95 HGNC:31647|MIM:613185|miRBase:MI0000097 4 - microRNA 95 miscRNA MIR95 microRNA 95 O - 20121230 -9606 407053 MIR96 - DFNA50|MIRN96|hsa-mir-96|miR-96|miRNA96 HGNC:31648|MIM:611606|miRBase:MI0000098 7 7q32.2 microRNA 96 miscRNA MIR96 microRNA 96 O - 20121230 -9606 407054 MIR98 - MIRN98|hsa-mir-98|miR-98 HGNC:31649|MIM:300810|miRBase:MI0000100 X Xp11.22 microRNA 98 miscRNA MIR98 microRNA 98 O - 20121230 -9606 407055 MIR99A - MIRN99A HGNC:31650|MIM:614509|miRBase:MI0000101 21 21q21.1 microRNA 99a miscRNA MIR99A microRNA 99a O - 20121230 -9606 407056 MIR99B - MIRN99B HGNC:31651|MIM:614510|miRBase:MI0000746 19 19q13.41 microRNA 99b miscRNA MIR99B microRNA 99b O - 20121230 -9606 407738 FAM19A1 - TAFA-1|TAFA1 HGNC:21587|Ensembl:ENSG00000183662|HPRD:13294|Vega:OTTHUMG00000158745 3 3p14.1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 protein-coding FAM19A1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 O chemokine-like protein TAFA-1|protein FAM19A1 20121230 -9606 407835 LOC407835 - - - 7 7q32.3 mitogen-activated protein kinase kinase 2 pseudogene pseudo - - - - 20121230 -9606 407973 SCA20 - C11DUPq12|DUP11q12 HGNC:17204|MIM:608687 11 11p11.2-q13.3 spinocerebellar ataxia 20 unknown SCA20 spinocerebellar ataxia 20 O - 20120622 -9606 407975 MIR17HG RP11-121J7.2 C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 HGNC:23564|MIM:609415|HPRD:12617 13 13q31.3 miR-17-92 cluster host gene (non-protein coding) miscRNA MIR17HG miR-17-92 cluster host gene (non-protein coding) O - 20121230 -9606 407977 TNFSF12-TNFSF13 - TWE-PRIL HGNC:33537|Ensembl:ENSG00000239697|Ensembl:ENSG00000248871|HPRD:05128|HPRD:18205|Vega:OTTHUMG00000161573 17 17p13.1 TNFSF12-TNFSF13 readthrough protein-coding TNFSF12-TNFSF13 TNFSF12-TNFSF13 readthrough O TNFSF12-TNFSF13 protein|tumor necrosis factor (ligand) superfamily, member 12-member 13 20121230 -9606 408029 C2orf27B - - HGNC:33824|Ensembl:ENSG00000186825|HPRD:14664|Vega:OTTHUMG00000154614 2 2q21 chromosome 2 open reading frame 27B protein-coding C2orf27B chromosome 2 open reading frame 27B O uncharacterized protein LOC408029 20121230 -9606 408050 NOMO3 - Nomo HGNC:25242|MIM:609159|Ensembl:ENSG00000103226|HPRD:12376|Vega:OTTHUMG00000177317 16 16p13 NODAL modulator 3 protein-coding NOMO3 NODAL modulator 3 O nodal modulator 3|pM5 protein 3|pM5 protein, middle copy 20121230 -9606 408186 OVOS - - - 12 12p13 ovostatin protein-coding - - - - 20121230 -9606 408187 SPINK14 - SPINK5L2 HGNC:33825|Ensembl:ENSG00000196800|HPRD:18098|Vega:OTTHUMG00000129732 5 5q32 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding SPINK14 serine peptidase inhibitor, Kazal type 14 (putative) O Kazal type serine protease inhibitor 5-like 2|serine protease inhibitor Kazal-type 14 20121230 -9606 408188 VTLGL1 - - - 5 5q32 vitellogenin-like 1 unknown - - - - 20120710 -9606 408221 SCA26 - - HGNC:31097|MIM:609306 19 19p13.3 spinocerebellar ataxia 26 unknown SCA26 spinocerebellar ataxia 26 O - 20120622 -9606 408257 CILD4 - - MIM:608646 15 15q13.1-q15.1 Ciliary dyskinesia, primary, 4 unknown - - - - 20120622 -9606 408258 CILD5 - - MIM:608647 - - Ciliary dyskinesia, primary, 5 unknown - - - - 20121027 -9606 408259 HPC3 - HPC20 MIM:608656 20 20q13 Prostate cancer, hereditary, 3 unknown - - - - 20121209 -9606 408260 HPC4 - HPC7 MIM:608658 7 7p11-q21 Prostate cancer, hereditary, 4 unknown - - - - 20120622 -9606 408263 FNDC9 - C5orf40 HGNC:33547|Ensembl:ENSG00000172568|HPRD:17524|Vega:OTTHUMG00000130248 5 5q33.3 fibronectin type III domain containing 9 protein-coding FNDC9 fibronectin type III domain containing 9 O fibronectin type III domain-containing protein 9|fibronectin type-III domain-containing protein C5orf40 20121230 -9606 414058 ACRPV - - MIM:102510 2 2q36 Acropectorovertebral dysplasia (F syndrome) unknown - - - - 20120622 -9606 414059 TBC1D3B - PRC17|TBC1D3I HGNC:27011|MIM:610144|Ensembl:ENSG00000224226|HPRD:11264|Vega:OTTHUMG00000132733 17 17q12 TBC1 domain family, member 3B protein-coding TBC1D3B TBC1 domain family, member 3B O Rab GTPase-activating protein PRC17 duplicate|TBC1 domain family member 3B|TBC1 domain family member 3B/I|TBC1 domain family, member 3I|prostate cancer gene 17 duplicate 20121230 -9606 414060 TBC1D3C - TBC1D3D HGNC:24889|MIM:610806|Ensembl:ENSG00000234972|HPRD:17559|Vega:OTTHUMG00000132734 17 17q12 TBC1 domain family, member 3C protein-coding TBC1D3C TBC1 domain family, member 3C O Rab GTPase-activating protein PRC17|TBC1 domain family member 3C-like protein ENSP00000341742|TBC1 domain family member 3C/3D 20121230 -9606 414061 DNAJB3 - HCG3 HGNC:32397|HPRD:13638 2 2q37 DnaJ (Hsp40) homolog, subfamily B, member 3 protein-coding DNAJB3 DnaJ (Hsp40) homolog, subfamily B, member 3 O dnaJ homolog subfamily B member 3 20121230 -9606 414062 CCL3L3 - 464.2|D17S1718|LD78|LD78BETA|SCYA3L|SCYA3L1 HGNC:30554|MIM:609468|Ensembl:ENSG00000256515|HPRD:14426|Vega:OTTHUMG00000180318 17 17q21.1 chemokine (C-C motif) ligand 3-like 3 protein-coding CCL3L3 chemokine (C-C motif) ligand 3-like 3 O C-C motif chemokine 3-like 1|G0/G1 switch regulatory protein 19-2|G0S19-2|LD78-beta(1-70)|PAT 464.2|chemokine (C-C motif) ligand 3-like, centromeric|small inducible cytokine A3-like 1|tonsillar lymphocyte LD78 beta protein 20121230 -9606 414130 NANOGP7 - NANOGP3 HGNC:23105 14 14q32 Nanog homeobox pseudogene 7 pseudo NANOGP7 Nanog homeobox pseudogene 7 O - 20121230 -9606 414131 NANOGP2 - NANOGP4 HGNC:23100 2 2q36 Nanog homeobox pseudogene 2 pseudo NANOGP2 Nanog homeobox pseudogene 2 O - 20121230 -9606 414132 NANOGP4 - NANOGP2 HGNC:23102 7 7p15 Nanog homeobox pseudogene 4 pseudo NANOGP4 Nanog homeobox pseudogene 4 O - 20121230 -9606 414133 NANOGP5 - - HGNC:23103 9 9q31 Nanog homeobox pseudogene 5 pseudo NANOGP5 Nanog homeobox pseudogene 5 O - 20121230 -9606 414134 NANOGP6 - - HGNC:23104 10 10q24 Nanog homeobox pseudogene 6 pseudo NANOGP6 Nanog homeobox pseudogene 6 O - 20121230 -9606 414135 NANOGP11 - - HGNC:32941 6 6q25 Nanog homeobox pseudogene 11 pseudo NANOGP11 Nanog homeobox pseudogene 11 O - 20121230 -9606 414149 ACBD7 RP11-455B2.6 bA455B2.2 HGNC:17715|Ensembl:ENSG00000176244|Vega:OTTHUMG00000017725 10 10p13 acyl-CoA binding domain containing 7 protein-coding ACBD7 acyl-CoA binding domain containing 7 O acyl-CoA-binding domain-containing protein 7|acyl-Coenzyme A binding domain containing 7 20121230 -9606 414152 C10orf105 RP11-472K8.2 - HGNC:20304|Ensembl:ENSG00000214688 10 10q22.1 chromosome 10 open reading frame 105 protein-coding C10orf105 chromosome 10 open reading frame 105 O uncharacterized protein C10orf105 20121230 -9606 414153 SNRPEP2 RP11-390F4.1 SNRPEL1|bA390F4.4 HGNC:20733 9 9p24.1 small nuclear ribonucleoprotein polypeptide E pseudogene 2 pseudo SNRPEP2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 O - 20121230 -9606 414155 FAM25HP RP11-145E20.5 C10orf43|bA145E20.4|bA145E20.5 HGNC:23591 10 10q11.22 family with sequence similarity 25, member H pseudogene unknown FAM25HP family with sequence similarity 25, member H pseudogene O - 20121102 -9606 414157 C10orf62 - bA548K23.1 HGNC:23294|Ensembl:ENSG00000203942|HPRD:16581|Vega:OTTHUMG00000018858 10 10q24.2 chromosome 10 open reading frame 62 protein-coding C10orf62 chromosome 10 open reading frame 62 O uncharacterized protein C10orf62 20121230 -9606 414169 BANF1P2 - BANF1L1|bA122K13.8 HGNC:23426 10 10q26.3 barrier to autointegration factor 1 pseudogene 2 pseudo BANF1P2 barrier to autointegration factor 1 pseudogene 2 O - 20121230 -9606 414189 AGAP6 - CTGLF3|bA324H6.1 HGNC:23466|Ensembl:ENSG00000204149|Vega:OTTHUMG00000018220 10 10q11.23 ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 protein-coding AGAP6 ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 O AGAP-6|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6|centaurin, gamma-like family, member 3|centaurin-gamma-like family member 3 20121230 -9606 414194 CCNYL2 RP11-178A10.2 C10orf21|bA178A10.2 HGNC:23495|Ensembl:ENSG00000182632|Vega:OTTHUMG00000018009 10 10q11.21 cyclin Y-like 2 pseudo CCNYL2 cyclin Y-like 2 O - 20121230 -9606 414196 CELF2-AS1 - C10orf31 HGNC:23515|HPRD:18529 10 10p14 CELF2 antisense RNA 1 unknown CELF2-AS1 CELF2 antisense RNA 1 O - 20121230 -9606 414197 ZNF32-AS1 RP11-402L1.3 ZNF32OS1|bA402L1.8 HGNC:23577 10 10q11.21 ZNF32 antisense RNA 1 miscRNA ZNF32-AS1 ZNF32 antisense RNA 1 O - 20121230 -9606 414200 NHP2P1 - NOLA2P1|bA360G10.4 HGNC:23582 10 10q23.32 NHP2 ribonucleoprotein pseudogene 1 pseudo NHP2P1 NHP2 ribonucleoprotein pseudogene 1 O - 20121230 -9606 414201 ZNF32-AS3 - C10orf44|ZNF32-OT1|bA402L1.3 HGNC:23583 10 10q11.21 ZNF32 antisense RNA 3 miscRNA ZNF32-AS3 ZNF32 antisense RNA 3 O - 20121230 -9606 414208 ZNF32-AS2 - ZNF32OS2|b402L1.7 HGNC:23593 10 10q11.21 ZNF32 antisense RNA 2 miscRNA ZNF32-AS2 ZNF32 antisense RNA 2 O - 20121230 -9606 414209 GLUD1P6 - GLUDP6|bK2173J9.1 HGNC:23610 10 10q11.22 glutamate dehydrogenase 1 pseudogene 6 pseudo GLUD1P6 glutamate dehydrogenase 1 pseudogene 6 O - 20121230 -9606 414212 GLUD1P7 - GLUDP7|bA342C24.3 HGNC:23636 10 10q11.22 glutamate dehydrogenase 1 pseudogene 7 pseudo GLUD1P7 glutamate dehydrogenase 1 pseudogene 7 O - 20121230 -9606 414213 GLUD1P8 - GLUDP8|bA144G6.5 HGNC:23637 10 10q11.22 glutamate dehydrogenase 1 pseudogene 8 pseudo GLUD1P8 glutamate dehydrogenase 1 pseudogene 8 O - 20121230 -9606 414216 BMS1P2 RP11-144G6.2 BMS1LP2 HGNC:23650|Vega:OTTHUMG00000018113 10 10q11.22 BMS1 pseudogene 2 pseudo BMS1P2 BMS1 pseudogene 2 O - 20121230 -9606 414217 BMS1P3 RP11-96C23.3 BMS1LP3 HGNC:23651|Vega:OTTHUMG00000018662 10 10q23.2 BMS1 pseudogene 3 pseudo BMS1P3 BMS1 pseudogene 3 O - 20121230 -9606 414224 CTGLF12P - bA164N7.2 HGNC:23661 10 10q11.22 centaurin, gamma-like family, member 12 pseudogene pseudo CTGLF12P centaurin, gamma-like family, member 12 pseudogene O - 20121230 -9606 414228 RPS27P1 - RPS27_10_1079|bA108M11.3 HGNC:23740 10 10q23.32 ribosomal protein S27 pseudogene 1 pseudo RPS27P1 ribosomal protein S27 pseudogene 1 O - 20121230 -9606 414230 RPS15AP5 - RPS15A_9_1106 HGNC:23743 10 10q26.13 ribosomal protein S15a pseudogene 5 pseudo RPS15AP5 ribosomal protein S15a pseudogene 5 O - 20121230 -9606 414235 PRR26 RP11-809C18.2 C10orf108 HGNC:30724|HPRD:18528 10 10p15.3 proline rich 26 miscRNA PRR26 proline rich 26 O - 20121230 -9606 414236 C10orf55 - bA417O11.3 HGNC:31008|Ensembl:ENSG00000222047|HPRD:16580|Vega:OTTHUMG00000018496 10 10q22.2 chromosome 10 open reading frame 55 protein-coding C10orf55 chromosome 10 open reading frame 55 O uncharacterized protein C10orf55 20121230 -9606 414241 FAM35B RP11-38L15.1 bA38L15.1 HGNC:31425 10 10q11.22 family with sequence similarity 35, member A pseudogene pseudo FAM35B family with sequence similarity 35, member B O - 20121230 -9606 414242 NRG3-AS1 - C10orf100 HGNC:31429 10 10q23.1 NRG3 antisense RNA 1 protein-coding NRG3-AS1 NRG3 antisense RNA 1 O NRG3 antisense RNA 1 (non-protein coding) 20121021 -9606 414243 LINC00595 - C10orf101 HGNC:31430 10 10q22.3 long intergenic non-protein coding RNA 595 miscRNA LINC00595 long intergenic non-protein coding RNA 595 O - 20121122 -9606 414245 DNAJC9-AS1 - C10orf103|bA537A6.3 HGNC:31432 10 10q22.2 DNAJC9 antisense RNA 1 miscRNA DNAJC9-AS1 DNAJC9 antisense RNA 1 O - 20121230 -9606 414246 CDH23-AS1 - C10orf106|NCRNA00223|bA327E2.3 HGNC:31433 10 10q22.1 CDH23 antisense RNA 1 miscRNA CDH23-AS1 CDH23 antisense RNA 1 O - 20121021 -9606 414247 COX20P1 - FAM36B|bA119F7.2 HGNC:31435 10 10q21.3 COX20 Cox2 chaperone homolog (S. cerevisiae) pseudogene 1 protein-coding COX20P1 COX20 Cox2 chaperone homolog (S. cerevisiae) pseudogene 1 O family with sequence similarity 36, member B (pseudogene) 20120226 -9606 414254 RPSAP6 - LAMR1P6|RPSA_23_1065 HGNC:31458 10 10q22.2 ribosomal protein SA pseudogene 6 pseudo RPSAP6 ribosomal protein SA pseudogene 6 O - 20121230 -9606 414260 LINC00619 - C10orf136|bA168P8.1 HGNC:31657 10 10q11.21 long intergenic non-protein coding RNA 619 miscRNA LINC00619 long intergenic non-protein coding RNA 619 O - 20121230 -9606 414269 CYP17A1-AS1 RP11-753C18.3 CYP17A1OS|bA753C18.3 HGNC:31671 10 10q24.32 CYP17A1 antisense RNA 1 miscRNA CYP17A1-AS1 CYP17A1 antisense RNA 1 O - 20121230 -9606 414300 LOC414300 - - - 12 12q23 uncharacterized LOC414300 unknown - - - - 20120508 -9606 414301 DDI1 - - HGNC:18961|Ensembl:ENSG00000170967|HPRD:13128|Vega:OTTHUMG00000165990 11 11q22.3 DNA-damage inducible 1 homolog 1 (S. cerevisiae) protein-coding DDI1 DNA-damage inducible 1 homolog 1 (S. cerevisiae) O DDI1, DNA-damage inducible 1, homolog 1|DNA-damage inducible protein 1|protein DDI1 homolog 1 20121230 -9606 414312 C9orf118 RP11-342C23.2 bA342C23.1 HGNC:25943 9 9q22.32 chromosome 9 open reading frame 118 protein-coding C9orf118 chromosome 9 open reading frame 118 O Putative uncharacterized protein C9orf118 20121216 -9606 414316 COL5A1-AS1 RP11-54A22.4 C9orf104|bA54A22.4 HGNC:31368 9 9q34.3 COL5A1 antisense RNA 1 miscRNA COL5A1-AS1 COL5A1 antisense RNA 1 O - 20121216 -9606 414318 C9orf106 - bA65J3.5 HGNC:31370|HPRD:10207 9 9q34.11 chromosome 9 open reading frame 106 protein-coding C9orf106 chromosome 9 open reading frame 106 O putative uncharacterized protein C9orf106 20121230 -9606 414319 LINC00587 RP11-785H23.1 C9orf107|bA785H23.1 HGNC:31372 9 9q31.1 long intergenic non-protein coding RNA 587 miscRNA LINC00587 long intergenic non-protein coding RNA 587 O - 20121216 -9606 414322 IKBKAP-IT1 - C9orf120|NCRNA00298|bA3J11.5 HGNC:31413 9 9q31.3 IKBKAP intronic transcript 1 (non-protein coding) miscRNA IKBKAP-IT1 IKBKAP intronic transcript 1 (non-protein coding) O - 20121021 -9606 414325 DEFB103A - BD-3|DEFB-3|DEFB103|DEFB3|HBD3|HBP-3|HBP3|hBD-3 HGNC:15967|Ensembl:ENSG00000176797|Vega:OTTHUMG00000143855 8 8p23.1 defensin, beta 103A protein-coding DEFB103A defensin, beta 103A O beta-defensin 103|beta-defensin 3|defensin, beta 103|defensin, beta 3|defensin-like protein 20121230 -9606 414327 PS1TP4 - - - 2 - HBV preS1-transactivated protein 4 unknown - - - - 20120710 -9606 414328 IDNK RP11-522I20.2 C9orf103|bA522I20.2 HGNC:31367|MIM:611343|Ensembl:ENSG00000148057|HPRD:16671|Vega:OTTHUMG00000020105 9 9q21.32 idnK, gluconokinase homolog (E. coli) protein-coding IDNK idnK, gluconokinase homolog (E. coli) O glucokinase-like protein|gluconate kinase|gluconokinase-like protein|probable gluconokinase 20121230 -9606 414332 LCN10 RP11-216L13.3 - HGNC:20892|MIM:612904|Ensembl:ENSG00000187922|HPRD:13977|Vega:OTTHUMG00000150428 9 9q34.3 lipocalin 10 protein-coding LCN10 lipocalin 10 O epididymal-specific lipocalin-10 20121230 -9606 414351 LINC00229 - C22orf10|NCRNA00229|dJ474I12.C22.2 HGNC:13240 22 22q13.3 long intergenic non-protein coding RNA 229 miscRNA LINC00229 long intergenic non-protein coding RNA 229 O - 20121230 -9606 414355 VKORC1P1 - - HGNC:33182 X Xp22.11 VKORC1 pseudogene 1 pseudo VKORC1P1 VKORC1 pseudogene 1 O - 20121230 -9606 414357 VKORC1P2 - - HGNC:33183 1 1p32 VKORC1 pseudogene 2 pseudo VKORC1P2 VKORC1 pseudogene 2 O - 20121230 -9606 414751 TRAPPC2P8 - TRAPPC2P3B HGNC:37731 Y Yq11.221 trafficking protein particle complex 2 pseudogene 8 pseudo TRAPPC2P8 trafficking protein particle complex 2 pseudogene 8 O - 20121209 -9606 414752 TRAPPC2P10 - TRAPPC2P5B HGNC:37732 Y Yq11.223 trafficking protein particle complex 2 pseudogene 10 pseudo TRAPPC2P10 trafficking protein particle complex 2 pseudogene 10 O - 20121209 -9606 414753 TRAPPC2P9 - TRAPPC2P4B HGNC:37733 Y Yq11.223 trafficking protein particle complex 2 pseudogene 9 pseudo TRAPPC2P9 trafficking protein particle complex 2 pseudogene 9 O - 20121209 -9606 414754 ACTG1P11 - - HGNC:37651 Y Yq11.221 actin, gamma 1 pseudogene 11 pseudo ACTG1P11 actin, gamma 1 pseudogene 11 O - 20121209 -9606 414760 HCG14 XXbac-BPG322C17.4 dJ111M5.4 HGNC:18323 6 6p21 HLA complex group 14 (non-protein coding) miscRNA HCG14 HLA complex group 14 (non-protein coding) O - 20121122 -9606 414761 HCG15 XXbac-BPG258E24.2 dJ25J6.6 HGNC:18361 6 6p21 HLA complex group 15 (non-protein coding) unknown HCG15 HLA complex group 15 (non-protein coding) O - 20120420 -9606 414763 LINC00516 - C14orf17 HGNC:19436 14 14q11.2 long intergenic non-protein coding RNA 516 pseudo LINC00516 long intergenic non-protein coding RNA 516 O - 20121122 -9606 414764 HCG23 - dJ1077I5.3 HGNC:19713 6 6p21 HLA complex group 23 (non-protein coding) miscRNA HCG23 HLA complex group 23 (non-protein coding) O - 20121230 -9606 414765 HCG25 - dJ1033B10.16 HGNC:20196 6 6p21 HLA complex group 25 (non-protein coding) miscRNA HCG25 HLA complex group 25 (non-protein coding) O - 20121230 -9606 414766 HCG16 XXbac-BPG258E24.6 dJ25J6.7 HGNC:20424 6 6p21.3 HLA complex group 16 unknown HCG16 HLA complex group 16 O - 20071004 -9606 414767 LINC00596 - C14orf165|CNSLT1I7G HGNC:23167|HPRD:18533 14 14q11.2 long intergenic non-protein coding RNA 596 miscRNA LINC00596 long intergenic non-protein coding RNA 596 O - 20121021 -9606 414768 HCG24 - dJ1033B10.15 HGNC:23500 6 6p21 HLA complex group 24 (non-protein coding) miscRNA HCG24 HLA complex group 24 (non-protein coding) O - 20120420 -9606 414771 DDR1-AS1 - TIGD1L|bCX111D4.7|bPG70P20.2|bQB10J12.1 HGNC:28694 6 6p21.3 DDR1 antisense RNA 1 (head to head) unknown DDR1-AS1 DDR1 antisense RNA 1 (head to head) O - 20121018 -9606 414774 HCG20 - NCRNA00149 HGNC:31334 6 6p21 HLA complex group 20 (non-protein coding) miscRNA HCG20 HLA complex group 20 (non-protein coding) O - 20080918 -9606 414775 HCG21 - NCRNA00150 HGNC:31335 6 6p21 HLA complex group 21 (non-protein coding) miscRNA HCG21 HLA complex group 21 (non-protein coding) O - 20080918 -9606 414776 HCG19P - - HGNC:31336 6 6p21.3 HLA complex group 19 pseudogene pseudo HCG19P HLA complex group 19 pseudogene O - 20070912 -9606 414777 HCG18 - - HGNC:31337 6 6p21.3 HLA complex group 18 (non-protein coding) miscRNA HCG18 HLA complex group 18 (non-protein coding) O - 20121230 -9606 414778 HCG17 - LINC00046|NCRNA00046 HGNC:31339 6 6p21 HLA complex group 17 (non-protein coding) miscRNA HCG17 HLA complex group 17 (non-protein coding) O - 20121230 -9606 414886 SPG27 - - HGNC:26071|MIM:609041 10 10q22.1-q24.1 spastic paraplegia 27 (autosomal recessive) unknown SPG27 spastic paraplegia 27 (autosomal recessive) O - 20120622 -9606 414899 BLID - BRCC2 HGNC:33495|MIM:608853|Ensembl:ENSG00000259571|HPRD:16392|Vega:OTTHUMG00000166060 11 11q24.1 BH3-like motif containing, cell death inducer protein-coding BLID BH3-like motif containing, cell death inducer O BH3-like motif-containing cell death inducer|breast cancer cell 2|breast cancer cell protein 2 20121230 -9606 414918 DENND6B AA-C720C749L.1 AFI1B|FAM116B HGNC:32690|Ensembl:ENSG00000205593|HPRD:17526|Vega:OTTHUMG00000150210 22 22q13.33 DENN/MADD domain containing 6B protein-coding DENND6B DENN/MADD domain containing 6B O family with sequence similarity 116, member B|protein FAM116B 20121230 -9606 414919 C8orf82 - - HGNC:33826|Ensembl:ENSG00000213563|HPRD:17567|Vega:OTTHUMG00000165181 8 8q24 chromosome 8 open reading frame 82 protein-coding C8orf82 chromosome 8 open reading frame 82 O UPF0598 protein C8orf82 20121230 -9606 414926 LINC00593 - C15orf50 HGNC:32382 15 15q23 long intergenic non-protein coding RNA 593 miscRNA LINC00593 long intergenic non-protein coding RNA 593 O - 20121230 -9606 414927 MGC34796 - - - 1 1p32 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo - - - - 20121230 -9606 415056 LOC415056 - - - 9 9p13 uncharacterized LOC415056 miscRNA - - - - 20121230 -9606 415116 PIM3 CITF22-49E9.1 pim-3 HGNC:19310|MIM:610580|Ensembl:ENSG00000198355|HPRD:15137|Vega:OTTHUMG00000150290 22 22q13 pim-3 oncogene protein-coding PIM3 pim-3 oncogene O serine/threonine kinase Pim-3|serine/threonine-protein kinase pim-3 20121230 -9606 415117 STX19 - - HGNC:19300|Ensembl:ENSG00000178750|HPRD:14477|Vega:OTTHUMG00000159013 3 3q11 syntaxin 19 protein-coding STX19 syntaxin 19 O syntaxin-19 20121230 -9606 425054 VCX3B - VCX-C|VCXC HGNC:31838|Ensembl:ENSG00000205642|HPRD:15646|Vega:OTTHUMG00000021106 X Xp22.31 variable charge, X-linked 3B protein-coding VCX3B variable charge, X-linked 3B O variable charge X-linked protein 3B|variably charged protein X-C 20121230 -9606 425057 TTTY9B - NCRNA00132|TTTY9|TTTY9A|TTY9 HGNC:32425 Y Yq11.221 testis-specific transcript, Y-linked 9B (non-protein coding) miscRNA TTTY9B testis-specific transcript, Y-linked 9B (non-protein coding) O - 20121207 -9606 431704 RGS21 - - HGNC:26839|MIM:612407|Ensembl:ENSG00000253148|Vega:OTTHUMG00000035594 1 1q31.1 regulator of G-protein signaling 21 protein-coding RGS21 regulator of G-protein signaling 21 O regulator of G-protein signalling 21 20121230 -9606 431705 ASTL - - HGNC:31704|MIM:608860|Ensembl:ENSG00000188886|HPRD:16396|Vega:OTTHUMG00000155212 2 2q11.1 astacin-like metallo-endopeptidase (M12 family) protein-coding ASTL astacin-like metallo-endopeptidase (M12 family) O astacin-like metalloendopeptidase|astacin-like metalloendopeptidase (M12 family)|oocyte astacin|ovastacin 20121230 -9606 431707 LHX8 - LHX7 HGNC:28838|MIM:604425|Ensembl:ENSG00000162624|HPRD:17275|Vega:OTTHUMG00000009692 1 1p31.1 LIM homeobox 8 protein-coding LHX8 LIM homeobox 8 O LIM-homeodomain protein Lhx8|LIM/homeobox protein Lhx8 20121230 -9606 431708 MDD1 - - MIM:608520 12 12q22-q23.2 Major depressive disorder unknown - - - - 20120622 -9606 431709 MDD2 - - MIM:608691 15 15q25.3-q26.2 Major depressive disorder 2 unknown - - - - 20120622 -9606 431710 ASPG1 - - MIM:608638 3 3q25-q27 Asperger syndrome, susceptibility to, 1 unknown - - - - 20120622 -9606 431711 ASPG2 - - MIM:608631 17 17p13 Asperger syndrome, susceptibility to, 2 unknown - - - - 20120622 -9606 431712 CMT2G - - MIM:608591 12 12q12-q13.3 Charcot-Marie-Tooth disease, axonal, type 2G unknown - - - - 20121018 -9606 432369 ATP5EP2 RP11-153M24.1 - HGNC:34026 13 13q12 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 pseudo ATP5EP2 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 O - 20121230 -9606 432400 EIG3 - - MIM:608762 9 9q32-q33 Epilepsy, idiopathic generalized, susceptibility to 3 unknown - - - - 20120622 -9606 439911 LOC439911 - - - 10 10q11.21 uncharacterized LOC439911 unknown - - - - 20121018 -9606 439915 KRTAP5-5 - KRTAP5-11|KRTAP5.5 HGNC:23601|Ensembl:ENSG00000185940|Vega:OTTHUMG00000057554 11 11p15.5 keratin associated protein 5-5 protein-coding KRTAP5-5 keratin associated protein 5-5 O keratin associated protein 5-11|keratin-associated protein 5-11|keratin-associated protein 5-5|keratin-associated protein 5.11|keratin-associated protein 5.5|ultrahigh sulfur keratin-associated protein 5.5 20121230 -9606 439916 LINC00615 - C12orf37 HGNC:26343 12 12q21.33 long intergenic non-protein coding RNA 615 miscRNA LINC00615 long intergenic non-protein coding RNA 615 O - 20121230 -9606 439921 MXRA7 - PS1TP1|TMAP1 HGNC:7541|Ensembl:ENSG00000182534|HPRD:18199|Vega:OTTHUMG00000180370 17 17q25.1 matrix-remodelling associated 7 protein-coding MXRA7 matrix-remodelling associated 7 O HBV PreS1-transactivated protein 1|matrix-remodeling-associated protein 7|transmembrane anchor protein 1 20121230 -9606 439927 C1orf180 - - HGNC:26647|HPRD:08182 1 1p22.3 chromosome 1 open reading frame 180 miscRNA C1orf180 chromosome 1 open reading frame 180 O - 20121230 -9606 439931 THAP7-AS1 - - HGNC:41013 22 22q11.21 THAP7 antisense RNA 1 miscRNA THAP7-AS1 THAP7 antisense RNA 1 O - 20121230 -9606 439933 MGC42157 - - - 4 4p14 uncharacterized locus MGC42157 unknown - - - - 20120511 -9606 439934 LINC00575 - C4orf11 HGNC:21342 4 4q21.3 long intergenic non-protein coding RNA 575 miscRNA LINC00575 long intergenic non-protein coding RNA 575 O - 20121230 -9606 439936 C5orf17 - - HGNC:26630 5 5p14.2 chromosome 5 open reading frame 17 unknown C5orf17 chromosome 5 open reading frame 17 O - 20121230 -9606 439938 LOC439938 - - - 6 6p21.33 uncharacterized LOC439938 unknown - - - - 20120622 -9606 439941 FER1L6-AS1 - C8orf54 HGNC:26652 8 8q24.13 FER1L6 antisense RNA 1 miscRNA FER1L6-AS1 FER1L6 antisense RNA 1 O - 20121230 -9606 439943 LINC00269 RP13-153N15.1 CXorf62|NCRNA00269 HGNC:26586 X Xq13.1 long intergenic non-protein coding RNA 269 unknown LINC00269 long intergenic non-protein coding RNA 269 O - 20121021 -9606 439944 FLJ32742 - - - X Xp21.3 uncharacterized locus FLJ32742 unknown - - - - 20120508 -9606 439945 IL9RP2 - - HGNC:6032 10 10p15.3 interleukin 9 receptor pseudogene 2 pseudo IL9RP2 interleukin 9 receptor pseudogene 2 O - 20121230 -9606 439949 PRKCQ-AS1 - - HGNC:44689 10 10p14 PRKCQ antisense RNA 1 miscRNA PRKCQ-AS1 PRKCQ antisense RNA 1 O - 20121230 -9606 439950 CELF2-AS2 - - HGNC:44703 10 10p14 CELF2 antisense RNA 2 miscRNA CELF2-AS2 CELF2 antisense RNA 2 O - 20121230 -9606 439951 LOC439951 - - - 10 10p14 uncharacterized LOC439951 unknown - - - - 20121230 -9606 439953 PPIAP31 - - HGNC:44962 10 10p11.22 peptidylprolyl isomerase A (cyclophilin A) pseudogene 31 pseudo PPIAP31 peptidylprolyl isomerase A (cyclophilin A) pseudogene 31 O - 20121230 -9606 439954 RPL7P37 - RPL7_17_1035 HGNC:36656 10 10p11.21 ribosomal protein L7 pseudogene 37 pseudo RPL7P37 ribosomal protein L7 pseudogene 37 O - 20121230 -9606 439957 IGKV1ORY-1 - IGKV1/ORY-1 HGNC:37729|IMGT/GENE-DB:IGKV1/ORY-1 Y Yq11.21 immunoglobulin kappa variable 1/ORY-1 (pseudogene) pseudo IGKV1ORY-1 immunoglobulin kappa variable 1/ORY-1 (pseudogene) O - 20120818 -9606 439965 FAM35B2 RP11-575L16.2 - HGNC:34038 10 10q11.22 family with sequence similarity 35, member A pseudogene pseudo FAM35B2 family with sequence similarity 35, member B2 (pseudogene) O - 20121230 -9606 439990 LOC439990 - - - 10 10q22.3 uncharacterized LOC439990 miscRNA - - - - 20121230 -9606 439992 RPS3AP5 - RPS3A_15_1074|bA486O22.3 HGNC:23744 10 10q23.1 ribosomal protein S3A pseudogene 5 pseudo RPS3AP5 ribosomal protein S3A pseudogene 5 O - 20121230 -9606 439994 LOC439994 - - - 10 10q23.2 uncharacterized LOC439994 miscRNA - - - - 20121230 -9606 439996 IFIT1B - IFIT1L|bA149I23.6 HGNC:23442|Ensembl:ENSG00000204010|HPRD:17129|Vega:OTTHUMG00000018709 10 10q23.31 interferon-induced protein with tetratricopeptide repeats 1B protein-coding IFIT1B interferon-induced protein with tetratricopeptide repeats 1B O interferon-induced protein with tetratricopeptide repeats 1-like protein 20121230 -9606 440013 DUX4L10 XX-2136C48.1 DUX10 HGNC:31354 10 10q26.3 double homeobox 4 like 10 pseudo DUX4L10 double homeobox 4 like 10 O - 20121230 -9606 440014 DUX4L12 XX-2136C48.3 - HGNC:38671 10 10q26.3 double homeobox 4 like 12 pseudo DUX4L12 double homeobox 4 like 12 O - 20121230 -9606 440017 DUX4L15 XX-2136C48.6 - HGNC:38674 10 10q26.3 double homeobox 4 like 15 pseudo DUX4L15 double homeobox 4 like 15 O - 20121209 -9606 440021 KRTAP5-2 - KRTAP5-8|KRTAP5.2 HGNC:23597|Ensembl:ENSG00000205867|HPRD:17249|Vega:OTTHUMG00000165547 11 11p15.5 keratin associated protein 5-2 protein-coding KRTAP5-2 keratin associated protein 5-2 O keratin-associated protein 5-2|keratin-associated protein 5-8|keratin-associated protein 5.2|keratin-associated protein 5.8|ultrahigh sulfur keratin-associated protein 5.2 20121230 -9606 440023 KRTAP5-6 - KRTAP5.6 HGNC:23600|Ensembl:ENSG00000205864|HPRD:17250|Vega:OTTHUMG00000043932 11 11p15.5 keratin associated protein 5-6 protein-coding KRTAP5-6 keratin associated protein 5-6 O keratin-associated protein 5-6|keratin-associated protein 5.6|ultrahigh sulfur keratin-associated protein 5.6 20121230 -9606 440026 TMEM41B - - HGNC:28948|Ensembl:ENSG00000166471|HPRD:18632|Vega:OTTHUMG00000165719 11 11p15.4 transmembrane protein 41B protein-coding TMEM41B transmembrane protein 41B O - 20121230 -9606 440027 RPL23AP65 - RPL23A_27_1119 HGNC:36289 11 11p15.4 ribosomal protein L23a pseudogene 65 pseudo RPL23AP65 ribosomal protein L23a pseudogene 65 O - 20121230 -9606 440028 LOC440028 - - - 11 11p15.4 uncharacterized LOC440028 miscRNA - - - - 20121230 -9606 440031 LOC440031 - - - 11 11p15.2 uncharacterized LOC440031 unknown - - - - 20120511 -9606 440034 DKFZp686K1684 - - - 11 11p13 uncharacterized LOC440034 miscRNA - - - - 20121230 -9606 440040 LOC440040 - - - 11 11p11.12 glutamate receptor, metabotropic 5 pseudogene pseudo - - - - 20121230 -9606 440041 TRIM51HP - - HGNC:43977 11 11q11 tripartite motif-containing 51H, pseudogene pseudo TRIM51HP tripartite motif-containing 51H, pseudogene O - 20121230 -9606 440043 PGAM1P8 - - HGNC:42455 11 11q13.1 phosphoglycerate mutase 1 pseudogene 8 pseudo PGAM1P8 phosphoglycerate mutase 1 pseudogene 8 O - 20121230 -9606 440044 SLC22A20 HC13567 Oat6 HGNC:29867|MIM:611696|HPRD:16913 11 11q13.1 solute carrier family 22, member 20 protein-coding SLC22A20 solute carrier family 22, member 20 O organic anion transporter 6|solute carrier family 22 member 20 20121230 -9606 440047 LOC440047 - - - 11 11q13.1 uncharacterized LOC440047 protein-coding - - - - 20120508 -9606 440049 FLJ42258 - - HPRD:13461 11 11q13.2 FLJ42258 protein unknown - - - - 20120710 -9606 440050 KRTAP5-7 - KRTAP5-3|KRTAP5.7 HGNC:23602|Ensembl:ENSG00000244411|HPRD:17251|Vega:OTTHUMG00000057570 11 11q13.4 keratin associated protein 5-7 protein-coding KRTAP5-7 keratin associated protein 5-7 O keratin-associated protein 5-3|keratin-associated protein 5-7|keratin-associated protein 5.3|keratin-associated protein 5.7|ultrahigh sulfur keratin-associated protein 5.7 20121230 -9606 440051 KRTAP5-11 - KRTAP5-5|KRTAP5-6|KRTAP5.11 HGNC:23606|Ensembl:ENSG00000204571|HPRD:17248|Vega:OTTHUMG00000057586 11 11q13.4 keratin associated protein 5-11 protein-coding KRTAP5-11 keratin associated protein 5-11 O keratin associated protein 5-5|keratin-associated protein 5-11|keratin-associated protein 5.11|ultrahigh sulfur keratin-associated protein 5.11 20121230 -9606 440055 RPS12P22 - RPS12_10_1156 HGNC:35671 11 11q13.4 ribosomal protein S12 pseudogene 22 pseudo RPS12P22 ribosomal protein S12 pseudogene 22 O - 20121230 -9606 440059 LOC440059 - - - 11 11q14.3 Cdon homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 440061 TRIM64EP - - HGNC:43975 11 11q14.3 tripartite motif containing 64E, pseudogene pseudo TRIM64EP tripartite motif containing 64E, pseudogene O - 20121230 -9606 440063 LOC440063 - - - 11 11q22.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 440067 CASP1P2 - - HGNC:43776 11 11q22.3 caspase 1, apoptosis-related cysteine peptidase pseudogene 2 pseudo CASP1P2 caspase 1, apoptosis-related cysteine peptidase pseudogene 2 O - 20121209 -9606 440068 CARD17 - INCA HGNC:33827|MIM:609490|Ensembl:ENSG00000255221|HPRD:17149|Vega:OTTHUMG00000166163 11 11q22.3 caspase recruitment domain family, member 17 protein-coding CARD17 caspase recruitment domain family, member 17 O Inhibitory CARD|caspase recruitment domain-containing protein 17|caspase-1 inhibitor INCA|inhibitory caspase recruitment domain (CARD) protein|inhibitory caspase recruitment domain protein 20121230 -9606 440072 LINC00167 - C11orf37|NCRNA00167 HGNC:30468|HPRD:16931 11 11q24.3 long intergenic non-protein coding RNA 167 miscRNA LINC00167 long intergenic non-protein coding RNA 167 O - 20121230 -9606 440073 IQSEC3 - - HGNC:29193|MIM:612118|Ensembl:ENSG00000120645|Vega:OTTHUMG00000167975 12 12p13.33 IQ motif and Sec7 domain 3 protein-coding IQSEC3 IQ motif and Sec7 domain 3 O IQ motif and SEC7 domain-containing protein 3 20121230 -9606 440077 ZNF705A - - HGNC:32281|Ensembl:ENSG00000196946|HPRD:13364|Vega:OTTHUMG00000168635 12 12p13.31 zinc finger protein 705A protein-coding ZNF705A zinc finger protein 705A O - 20121230 -9606 440078 FAM66C - - HGNC:21644 12 12p13.31 family with sequence similarity 66, member C miscRNA FAM66C family with sequence similarity 66, member C O - 20121230 -9606 440081 DDX12P - CHLR2|DDX12 HGNC:2737|MIM:601151 12 12p13.31 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene pseudo DDX12P DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene O - 20121230 -9606 440082 LOC440082 - - - 12 12p13.2 uncharacterized LOC440082 unknown - - - - 20120622 -9606 440084 LOC440084 hCG_1655019 - - 12 12p13.2 hCG1655019 unknown - - - - 20120511 -9606 440086 RPS6P1 - RPS6_9_1210 HGNC:32478 12 12p13.1 ribosomal protein S6 pseudogene 1 pseudo RPS6P1 ribosomal protein S6 pseudogene 1 O - 20121230 -9606 440087 C12orf69 - - HGNC:34401|Ensembl:ENSG00000179256|HPRD:18442|Vega:OTTHUMG00000167474 12 12p12.3 chromosome 12 open reading frame 69 protein-coding C12orf69 chromosome 12 open reading frame 69 O uncharacterized protein C12orf69 20121230 -9606 440093 H3F3C - H3.5 HGNC:33164|Ensembl:ENSG00000188375|HPRD:18443|Vega:OTTHUMG00000157811 12 12p11.21 H3 histone, family 3C protein-coding H3F3C H3 histone, family 3C O histone H3.3C|histone H3.5|histone variant H3.5 20121230 -9606 440097 DBX2 - - HGNC:33186|Ensembl:ENSG00000185610|HPRD:16910|Vega:OTTHUMG00000169559 12 12q12 developing brain homeobox 2 protein-coding DBX2 developing brain homeobox 2 O developing brain homeobox protein 2|homeobox protein DBX2 20121230 -9606 440101 FLJ12825 - - - 12 12q13.13 uncharacterized LOC440101 miscRNA - - - - 20121230 -9606 440104 TMEM198B UNQ1916 - HGNC:43629 12 12q13.2 transmembrane protein 198B, pseudogene pseudo TMEM198B transmembrane protein 198B, pseudogene O - 20121230 -9606 440107 PLEKHG7 - - HGNC:33829|Ensembl:ENSG00000187510|HPRD:17004|Vega:OTTHUMG00000170106 12 12q22 pleckstrin homology domain containing, family G (with RhoGef domain) member 7 protein-coding PLEKHG7 pleckstrin homology domain containing, family G (with RhoGef domain) member 7 O PH domain-containing family G member 7|pleckstrin homology domain-containing family G member 7 20121230 -9606 440117 LOC440117 - - - 12 12q24.32 uncharacterized LOC440117 miscRNA - - - - 20121230 -9606 440119 FLJ31485 - - - 12 12q24.33 uncharacterized LOC440119 miscRNA - - - - 20121230 -9606 440122 ZNF891 hCG_1646157 - HGNC:38709 12 12q24.33 zinc finger protein 891 unknown ZNF891 zinc finger protein 891 O - 20121211 -9606 440125 HNRNPA1P30 RP11-569O4.6 - HGNC:39548 13 13q12.11 heterogeneous nuclear ribonucleoprotein A1 pseudogene 30 pseudo HNRNPA1P30 heterogeneous nuclear ribonucleoprotein A1 pseudogene 30 O - 20121230 -9606 440129 FLJ26086 - - - 13 13q12.2 uncharacterized LOC440129 unknown - - - - 20120508 -9606 440131 LINC00544 RP11-90M5.1 - HGNC:43679|HPRD:17398 13 13q12.3 long intergenic non-protein coding RNA 544 miscRNA LINC00544 long intergenic non-protein coding RNA 544 O - 20121230 -9606 440132 LINC00545 hCG_1815504 - HGNC:43680 13 13q12.3 long intergenic non-protein coding RNA 545 miscRNA LINC00545 long intergenic non-protein coding RNA 545 O - 20121230 -9606 440137 FLJ31945 - - - 13 13q14.2 uncharacterized LOC440137 unknown - - - - 20121230 -9606 440138 ALG11 RP11-248G5.6 CDG1P|GT8 HGNC:32456|MIM:613666|Ensembl:ENSG00000253710|HPRD:11265|Vega:OTTHUMG00000016959 13 13q14.2 asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) protein-coding ALG11 asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) O GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase|asparagine-linked glycosylation protein 11 homolog|glycolipid 2-alpha-mannosyltransferase 20121230 -9606 440142 TARDBPP2 - - HGNC:39848 13 13q21.2 TAR DNA binding protein pseudogene 2 pseudo TARDBPP2 TAR DNA binding protein pseudogene 2 O - 20121230 -9606 440145 MZT1 RP11-11C5.2 C13orf37|MOZART1 HGNC:33830|MIM:613448|Ensembl:ENSG00000204899|Vega:OTTHUMG00000017069 13 13q22.1 mitotic spindle organizing protein 1 protein-coding MZT1 mitotic spindle organizing protein 1 O mitotic-spindle organizing protein 1|mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1 20121230 -9606 440149 LOC440149 - - - 13 13q34 uncharacterized LOC440149 unknown - - - - 20120508 -9606 440153 OR11H12 - - HGNC:30738|HPRD:18633 14 14q11.2 olfactory receptor, family 11, subfamily H, member 12 protein-coding OR11H12 olfactory receptor, family 11, subfamily H, member 12 O olfactory receptor 11H12 20121230 -9606 440157 LOC440157 - - HPRD:18445 14 14q11.1 uncharacterized LOC440157 unknown - - - - 20121230 -9606 440159 OR11H13P - ORNP-NP1 HGNC:29997 14 14q11.2 olfactory receptor, family 11, subfamily H, member 13 pseudogene pseudo OR11H13P olfactory receptor, family 11, subfamily H, member 13 pseudogene O - 20121230 -9606 440163 RNASE13 - - HGNC:25285|Ensembl:ENSG00000206150|HPRD:17980|Vega:OTTHUMG00000171110 14 14q11.1 ribonuclease, RNase A family, 13 (non-active) protein-coding RNASE13 ribonuclease, RNase A family, 13 (non-active) O ribonuclease 13|ribonuclease-like protein 13 20121230 -9606 440173 LOC440173 - - - 9 9q21 uncharacterized LOC440173 miscRNA - - - - 20121230 -9606 440176 RPL12P6 - RPL12_12_1352 HGNC:23538 14 14q13.1 ribosomal protein L12 pseudogene 6 pseudo RPL12P6 ribosomal protein L12 pseudogene 6 O - 20121230 -9606 440180 LOC440180 - - - 14 14q22.3 zinc finger, CCHC domain containing 7 pseudogene pseudo - - - - 20121230 -9606 440181 LOC440181 - - - 14 14q23.1 transmembrane protein 98 pseudogene pseudo - - - - 20121230 -9606 440184 LINC00238 - C14orf53|NCRNA00238 HGNC:20100|HPRD:14708 14 14q23.3 long intergenic non-protein coding RNA 238 miscRNA LINC00238 long intergenic non-protein coding RNA 238 O - 20121230 -9606 440193 CCDC88C - DAPLE|HkRP2|KIAA1509 HGNC:19967|MIM:611204|Ensembl:ENSG00000015133|Vega:OTTHUMG00000171099 14 14q32.11 coiled-coil domain containing 88C protein-coding CCDC88C coiled-coil domain containing 88C O Dvl-associating protein with a high frequency of leucine residues|coiled-coil domain-containing protein 88C|hook-related protein 2|protein Daple 20121230 -9606 440200 FLJ41170 - - HPRD:13450 14 14q32.31 uncharacterized LOC440200 unknown - - - - 20120511 -9606 440224 CXADRP3 - - HGNC:33974 18 18p11.21 coxsackie virus and adenovirus receptor pseudogene 3 pseudo CXADRP3 coxsackie virus and adenovirus receptor pseudogene 3 O - 20121230 -9606 440225 NF1P2 - NF1HHS HGNC:38664 15 15q11.2 neurofibromin 1 pseudogene 2 pseudo NF1P2 neurofibromin 1 pseudogene 2 O - 20121230 -9606 440233 LOC440233 - - Ensembl:ENSG00000259455|Vega:OTTHUMG00000171928 15 15q11.2 putative golgin subfamily A member 6-like protein 6-like protein-coding - - - - 20121209 -9606 440243 LOC440243 - - - 15 15q11.2 putative golgin subfamily A member 6-like protein-coding - - - - 20121230 -9606 440248 HERC2P9 - - HGNC:30495|HPRD:18634 15 15q13.1 hect domain and RLD 2 pseudogene 9 pseudo HERC2P9 hect domain and RLD 2 pseudogene 9 O - 20121230 -9606 440253 WHAMMP2 - WHAMML2|WHDC1L2 HGNC:32360 15 15q13.1 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2 pseudo WHAMMP2 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2 O - 20121230 -9606 440270 GOLGA8B - GOLGA5 HGNC:31973|MIM:609619|Ensembl:ENSG00000215252|HPRD:18635|Vega:OTTHUMG00000129549 15 15q14 golgin A8 family, member B protein-coding GOLGA8B golgin A8 family, member B O Golgin subfamily A member 8B|golgi autoantigen, golgin subfamily a, 8B|golgin-67 20121230 -9606 440272 ANP32F - - - 15 15q14 acidic (leucine-rich) nuclear phosphoprotein 32 family, member F unknown - - - - 20100404 -9606 440275 EIF2AK4 - GCN2 HGNC:19687|MIM:609280|Ensembl:ENSG00000128829|HPRD:18447|Vega:OTTHUMG00000172403 15 15q15.1 eukaryotic translation initiation factor 2 alpha kinase 4 protein-coding EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 O GCN2 eIF2alpha kinase|GCN2-like protein|eukaryotic translation initiation factor 2-alpha kinase 4 20121230 -9606 440278 CATSPER2P1 - - HGNC:31054 15 15q15.3 cation channel, sperm associated 2 pseudogene 1 pseudo CATSPER2P1 cation channel, sperm associated 2 pseudogene 1 O - 20121230 -9606 440279 UNC13C - - HGNC:23149|MIM:614568|Ensembl:ENSG00000137766|Vega:OTTHUMG00000172542 15 15q21.3 unc-13 homolog C (C. elegans) protein-coding UNC13C unc-13 homolog C (C. elegans) O Munc13-3|protein unc-13 homolog C|unc-13-like 3 20121230 -9606 440288 LOC440288 - - - 15 15q24.1 uncharacterized LOC440288 miscRNA - - - - 20121230 -9606 440292 LOC440292 - - - 15 15q24.3 uncharacterized LOC440292 protein-coding - - - - 20121209 -9606 440293 DNM1DN11-7 - DNM1DN11.7 - 15 15q25.2 DNM1DN11.7 duplicon other - - - - 20100404 -9606 440295 GOLGA6L9 - - HGNC:37229|Ensembl:ENSG00000197978|HPRD:11262|Vega:OTTHUMG00000170547 15 15q25.2 golgin A6 family-like 9 protein-coding GOLGA6L9 golgin A6 family-like 9 O Golgin subfamily A member 6-like protein 9|golgi autoantigen, golgin subfamily a, 6-like 9 20121230 -9606 440297 LOC440297 - - - 15 15q25.2 chondroitin sulfate proteoglycan 4 pseudogene pseudo - - - - 20121209 -9606 440299 DNM1P41 - DNM1DN11-6|DNM1DN11.6|DNM1DN11@ HGNC:35191 15 15q25.2 DNM1 pseudogene 41 pseudo DNM1P41 DNM1 pseudogene 41 O - 20121209 -9606 440300 LOC440300 - - - 15 15q25.2 chondroitin sulfate proteoglycan 4 pseudogene pseudo - - - - 20121209 -9606 440303 DNM1P44 - DNM1DN11-13|DNM1DN11.13|DNM1DN11@ HGNC:35194 15 15q25.2 DNM1 pseudogene 44 pseudo DNM1P44 DNM1 pseudogene 44 O - 20121209 -9606 440307 TTLL13 - - HGNC:32484|Ensembl:ENSG00000213471|Vega:OTTHUMG00000177210 15 15q26.1 tubulin tyrosine ligase-like family, member 13 protein-coding TTLL13 tubulin tyrosine ligase-like family, member 13 O tubulin polyglutamylase TTLL13|tubulin--tyrosine ligase-like protein 13 20121230 -9606 440311 LOC440311 - - - 15 15q26.2 glioma tumor suppressor candidate region gene 2 pseudogene pseudo - - - - 20121230 -9606 440313 LOC440313 - - HPRD:18448 15 15q26.3 uncharacterized LOC440313 unknown - - - - 20121230 -9606 440330 LOC440330 - - - 16 16p13.3 uncharacterized LOC440330 protein-coding - - - uncharacterized protein LOC440330 20120508 -9606 440335 LOC440335 - - Ensembl:ENSG00000267795|Vega:OTTHUMG00000177849 16 16p13.3 uncharacterized LOC440335 protein-coding - - - uncharacterized protein LOC440335 20121230 -9606 440337 LOC440337 - - HPRD:18449 16 16p13.2 uncharacterized LOC440337 unknown - - - - 20121230 -9606 440345 61E3.4 - - - 16 16p12.2 nuclear pore complex interacting protein-like protein-coding - - - - 20121230 -9606 440346 LOC440346 - - - 16 16p12.1 uncharacterized LOC440346 unknown - - - - 20120508 -9606 440348 NPIPL2 - A-761H5.4 HGNC:34409|HPRD:18636 16 16q23.1 nuclear pore complex interacting protein-like 2 protein-coding NPIPL2 nuclear pore complex interacting protein-like 2 O nuclear pore complex-interacting protein-like 2 20121209 -9606 440350 NPIPL1 - A-575C2.4|A-761H5.5 HGNC:33832|HPRD:18637 16 16p11.2 nuclear pore complex interacting protein-like 1 pseudo NPIPL1 nuclear pore complex interacting protein-like 1 O - 20121230 -9606 440352 SNX29P2 - RUNDC2C HGNC:31914 16 16p11.2 sorting nexin 29 pseudogene 2 pseudo SNX29P2 sorting nexin 29 pseudogene 2 O - 20121230 -9606 440353 LOC440353 - - - 16 16p11.2 nuclear pore complex interacting protein pseudogene pseudo - - - - 20121230 -9606 440354 LOC440354 - - - 16 16p11.2 smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene pseudo - - - - 20121230 -9606 440356 LOC440356 - - - 16 16p11.2 uncharacterized LOC440356 miscRNA - - - - 20121230 -9606 440359 CSDAP1 - - HGNC:2429 16 16p11.2 cold shock domain protein A pseudogene 1 pseudo CSDAP1 cold shock domain protein A pseudogene 1 O - 20121230 -9606 440362 HERC2P4 - D16F37S5 HGNC:4872 16 16p11.2 hect domain and RLD 2 pseudogene 4 pseudo HERC2P4 hect domain and RLD 2 pseudogene 4 O - 20121021 -9606 440366 HERC2P8 - - HGNC:38747 16 16p11.2 hect domain and RLD 2 pseudogene 8 pseudo HERC2P8 hect domain and RLD 2 pseudogene 8 O - 20121209 -9606 440375 RAB43P1 - RAB41P|RAB43P HGNC:33153 16 16q11.2 RAB43 pseudogene 1 pseudo RAB43P1 RAB43 pseudogene 1 O - 20121230 -9606 440386 LOC440386 - - - 16 16q23.1 uncharacterized LOC440386 unknown - - - - 20120511 -9606 440387 CTRB2 - - HGNC:2522|Ensembl:ENSG00000168928|Vega:OTTHUMG00000159271 16 16q23.1 chymotrypsinogen B2 protein-coding CTRB2 chymotrypsinogen B2 O chymotrypsin B2 20121230 -9606 440390 FLJ46320 - - - 16 16q24.2 uncharacterized LOC440390 miscRNA - - - - 20120508 -9606 440396 HNRNPA1P16 - - HGNC:39134 17 17p13.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene 16 pseudo HNRNPA1P16 heterogeneous nuclear ribonucleoprotein A1 pseudogene 16 O - 20121230 -9606 440400 RNASEK - - HGNC:33911|Ensembl:ENSG00000219200|HPRD:17568|Vega:OTTHUMG00000170145 17 17p13.1 ribonuclease, RNase K protein-coding RNASEK ribonuclease, RNase K O RNase kappa|ribonuclease kappa 20121230 -9606 440406 UBE2SP2 - - HGNC:32196 17 17p11.2 ubiquitin-conjugating enzyme E2S pseudogene 2 pseudo UBE2SP2 ubiquitin-conjugating enzyme E2S pseudogene 2 O - 20121230 -9606 440411 FAM106B - - HGNC:32450 17 17p11.2 family with sequence similarity 106, member B protein-coding FAM106B family with sequence similarity 106, member B O - 20121021 -9606 440414 TRE17 - - - 17 17p11.2 TRE17 protein protein-coding - - - - 20121209 -9606 440416 LOC440416 - - - 17 17p11.2 uncharacterized LOC440416 miscRNA - - - - 20120909 -9606 440419 TBC1D3P5 - - HGNC:43567 17 17q11.1 TBC1 domain family, member 3 pseudogene 5 pseudo TBC1D3P5 TBC1 domain family, member 3 pseudogene 5 O - 20121230 -9606 440423 SUZ12P1 - SUZ12P HGNC:32421 17 17q11.2 suppressor of zeste 12 homolog pseudogene 1 pseudo SUZ12P1 suppressor of zeste 12 homolog pseudogene 1 O - 20121230 -9606 440432 DKFZp564H213 - - - 17 17q12 uncharacterized LOC440432 miscRNA - - - - 20120508 -9606 440434 LOC440434 - - - 17 17q12 aminopeptidase puromycin sensitive pseudogene pseudo - - - - 20121230 -9606 440435 GPR179 - CSNB1E|GPR158L|GPR158L1 HGNC:31371|MIM:614515|Ensembl:ENSG00000188888|HPRD:13602|Vega:OTTHUMG00000132251 17 17q21.1 G protein-coupled receptor 179 protein-coding GPR179 G protein-coupled receptor 179 O GPR158-like 1|probable G-protein coupled receptor 158-like 1|probable G-protein coupled receptor 179 20121230 -9606 440446 FLJ42842 - - HPRD:13466 17 17q21.33 uncharacterized FLJ42842 unknown - - - - 20121230 -9606 440447 RPS2P27 - RPS2_6_520 HGNC:36876 4 4q28.3 ribosomal protein S2 pseudogene 27 pseudo RPS2P27 ribosomal protein S2 pseudogene 27 O - 20121230 -9606 440452 TBC1D3P2 - - HGNC:27783 17 17q23.2 TBC1 domain family, member 3 pseudogene 2 pseudo TBC1D3P2 TBC1 domain family, member 3 pseudogene 2 O - 20121230 -9606 440456 PLEKHM1P - - HGNC:35411 17 17q24.1 pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene pseudo PLEKHM1P pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene O - 20121230 -9606 440459 LOC440459 - - - 17 17q24.1 solute carrier family 16, member 6 pseudogene pseudo - - - - 20121230 -9606 440461 LOC440461 - - - 17 17q24.2 Rho GTPase activating protein 27 pseudogene pseudo - - - - 20121230 -9606 440465 BAIAP2-AS1 - - HGNC:44342|HPRD:13544 17 17q25.3 BAIAP2 antisense RNA 1 (head to head) miscRNA BAIAP2-AS1 BAIAP2 antisense RNA 1 (head to head) O - 20121230 -9606 440479 FLJ34223 - - - 18 18p11.22 uncharacterized LOC440479 unknown - - - - 20120511 -9606 440482 ANKRD20A5P - ANKRD20A5 HGNC:33833 18 18p11.21 ankyrin repeat domain 20 family, member A5, pseudogene pseudo ANKRD20A5P ankyrin repeat domain 20 family, member A5, pseudogene O - 20121230 -9606 440487 RPL21P128 - RPL21_62_1585 HGNC:36311 18 18q11.1 ribosomal protein L21 pseudogene 128 pseudo RPL21P128 ribosomal protein L21 pseudogene 128 O - 20121230 -9606 440489 LOC440489 - - - 18 18q11.2 ubiquitin fusion degradation 1 like (yeast) pseudogene pseudo - - - - 20121230 -9606 440498 HSBP1L1 - - HGNC:37243|Ensembl:ENSG00000226742|Vega:OTTHUMG00000180375 18 18q23 heat shock factor binding protein 1-like 1 protein-coding HSBP1L1 heat shock factor binding protein 1-like 1 O heat shock factor-binding protein 1-like protein 1 20121230 -9606 440503 PLIN5 - LSDA5|LSDP5|MLDP|OXPAT HGNC:33196|MIM:613248|Ensembl:ENSG00000214456|Vega:OTTHUMG00000182008 19 19p13.3 perilipin 5 protein-coding PLIN5 perilipin 5 O lipid storage droplet protein 5|perilipin-5 20121230 -9606 440508 CLEC4GP1 - - HGNC:33502 19 19p13.2 C-type lectin domain family 4, member G pseudogene 1 pseudo CLEC4GP1 C-type lectin domain family 4, member G pseudogene 1 O - 20121230 -9606 440514 LOC440514 - - - 19 19p13.11 citrate synthase, mitochondrial-like pseudo - - - - 20121230 -9606 440515 ZNF506 - - HGNC:23780|Ensembl:ENSG00000081665|Vega:OTTHUMG00000182367 19 19p13.11 zinc finger protein 506 protein-coding ZNF506 zinc finger protein 506 O - 20121230 -9606 440518 LOC440518 - - - 19 19p12 golgin A2 pseudogene pseudo - - - - 20121230 -9606 440519 ZNF724P - - HGNC:32460 19 19p12 zinc finger protein 724, pseudogene pseudo ZNF724P zinc finger protein 724, pseudogene O - 20121230 -9606 440525 LOC440525 - - - 19 19q13.2 proline rich 13 pseudogene pseudo - - - - 20121230 -9606 440533 PSG8 - PSG1 HGNC:9525|MIM:176397|Ensembl:ENSG00000124467|HPRD:15939|Vega:OTTHUMG00000151118 19 19q13.2 pregnancy specific beta-1-glycoprotein 8 protein-coding PSG8 pregnancy specific beta-1-glycoprotein 8 O C1 alternate|C2 alternate|C3 alternate|PS-beta-G-8|PSBG-8|pregnancy-specific beta-1 glycoprotein|pregnancy-specific beta-1-glycoprotein 8|pregnancy-specific glycoprotein 8 20121230 -9606 440556 FLJ42875 - - - 1 1p36.32 uncharacterized LOC440556 miscRNA - - - - 20121230 -9606 440558 LOC440558 - - HPRD:18451 10 10q21.1 uncharacterized LOC440558 unknown - - - - 20120511 -9606 440560 PRAMEF11 - RP5-845O24.2 HGNC:14086|Ensembl:ENSG00000204513|Vega:OTTHUMG00000001929 1 1p36.21 PRAME family member 11 protein-coding PRAMEF11 PRAME family member 11 O - 20121230 -9606 440561 PRAMEF6 - - HGNC:30583|Ensembl:ENSG00000232423|HPRD:17358|Vega:OTTHUMG00000001984 1 1p36.21 PRAME family member 6 protein-coding PRAMEF6 PRAME family member 6 O - 20121230 -9606 440563 LOC440563 - - - 1 1p36.21 heterogeneous nuclear ribonucleoprotein C-like protein-coding - - - - 20121230 -9606 440567 UQCRHL hCG_25371 - - 1 1p36.21 ubiquinol-cytochrome c reductase hinge protein-like protein-coding - - - hCG25371 20121230 -9606 440568 LOC440568 - - - 1 1p36.13 family with sequence similarity 131, member C pseudogene pseudo - - - - 20121230 -9606 440570 LOC440570 - - HPRD:18452 1 1p36.13 uncharacterized LOC440570 unknown - - - - 20121230 -9606 440574 MINOS1 RP5-1056L3.2 C1orf151|MIO10 HGNC:32068|Ensembl:ENSG00000173436|Vega:OTTHUMG00000002712 1 1p36.13 mitochondrial inner membrane organizing system 1 protein-coding MINOS1 mitochondrial inner membrane organizing system 1 O UPF0327 protein C1orf151|mitochondrial inner membrane organizing system protein 1 20121230 -9606 440575 RPL21P29 - RPL21_1_19 HGNC:35793 1 1p36.12 ribosomal protein L21 pseudogene 29 pseudo RPL21P29 ribosomal protein L21 pseudogene 29 O - 20121230 -9606 440577 LOC440577 - - - 1 1p36.11 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 440584 SLC2A1-AS1 - - HGNC:44187 1 1p34.2 SLC2A1 antisense RNA 1 miscRNA SLC2A1-AS1 SLC2A1 antisense RNA 1 O - 20121230 -9606 440585 FAM183A RP5-1034F7.1 - HGNC:34347|Ensembl:ENSG00000186973|Vega:OTTHUMG00000007286 1 1p34.2 family with sequence similarity 183, member A protein-coding FAM183A family with sequence similarity 183, member A O hCG23177|protein FAM183A 20121230 -9606 440587 RPL6P1 - RPL6_1_44 HGNC:35972 1 1p34.1 ribosomal protein L6 pseudogene 1 pseudo RPL6P1 ribosomal protein L6 pseudogene 1 O - 20121230 -9606 440589 RPS2P8 - RPS2_1_48 HGNC:36207 1 1p32.3 ribosomal protein S2 pseudogene 8 pseudo RPS2P8 ribosomal protein S2 pseudogene 8 O - 20121230 -9606 440590 ZYG11A - ZYG11 HGNC:32058|Ensembl:ENSG00000203995|HPRD:17399|Vega:OTTHUMG00000008923 1 1p32.3 zyg-11 family member A, cell cycle regulator protein-coding ZYG11A zyg-11 family member A, cell cycle regulator O ZYG-11A early embryogenesis protein|protein zyg-11 homolog A|zyg-11 homolog A 20121230 -9606 440594 FLJ31662 - - - 1 1p21.3 uncharacterized LOC440594 miscRNA - - - - 20121230 -9606 440595 EEF1A1P11 - EEF1AL9 HGNC:3206 1 1p21.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 11 pseudo EEF1A1P11 eukaryotic translation elongation factor 1 alpha 1 pseudogene 11 O - 20121230 -9606 440600 LOC440600 - - - 1 1p13.3 uncharacterized LOC440600 miscRNA - - - - 20121230 -9606 440602 LOC440602 - - - 1 1p13.3 uncharacterized LOC440602 unknown - - - - 20120508 -9606 440603 BCL2L15 - Bfk|C1orf178 HGNC:33624|Ensembl:ENSG00000188761|HPRD:16920|Vega:OTTHUMG00000011940 1 1p13.2 BCL2-like 15 protein-coding BCL2L15 BCL2-like 15 O bcl-2-like protein 15|bcl2-L-15|pro-apoptotic Bcl-2 protein 20121230 -9606 440606 HSD3BP2 - - HGNC:5220 1 1p13.1 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 2 pseudo HSD3BP2 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 2 O - 20121230 -9606 440670 AE01 - NBPF9 - 1 1q21.1 uncharacterized LOC440670 protein-coding - - - - 20120622 -9606 440672 NUDT4P1 - NUDT4P2 HGNC:18012 1 1q21.1 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 pseudo NUDT4P1 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 O - 20121230 -9606 440683 LOC440683 - - - 1 1q21.1 seven transmembrane helix receptor unknown - - - - 20120710 -9606 440686 HIST2H3PS2 RP5-998N21.6 p06 HGNC:32060 1 1q21.2 histone cluster 2, H3, pseudogene 2 pseudo HIST2H3PS2 histone cluster 2, H3, pseudogene 2 O - 20121230 -9606 440689 HIST2H2BF RP11-196G18.6 - HGNC:24700|Ensembl:ENSG00000203814|HPRD:18639|Vega:OTTHUMG00000012093 1 1q21.2 histone cluster 2, H2bf protein-coding HIST2H2BF histone cluster 2, H2bf O histone 2, H2bf|histone H2B type 2-F 20121230 -9606 440695 ETV3L - - HGNC:33834|Ensembl:ENSG00000253831|HPRD:13365|Vega:OTTHUMG00000041325 1 1q23.1 ets variant 3-like protein-coding ETV3L ets variant 3-like O ETS translocation variant 3-like protein|ets variant gene 3-like 20121230 -9606 440699 LRRC52 - - HGNC:32156|Ensembl:ENSG00000162763|HPRD:13396|Vega:OTTHUMG00000034625 1 1q24.1 leucine rich repeat containing 52 protein-coding LRRC52 leucine rich repeat containing 52 O BK channel auxilliary gamma subunit LRRC52|leucine-rich repeat-containing protein 52 20121230 -9606 440700 LOC440700 - - - 1 1q24.1 carbonic anhydrase XIV (CA14) pseudogene pseudo - - - - 20121230 -9606 440704 LOC440704 - - - 1 1q31.1-q31.2 uncharacterized LOC440704 miscRNA - - - - 20121230 -9606 440712 C1orf186 - - HGNC:25341|Ensembl:ENSG00000196533|HPRD:17400|Vega:OTTHUMG00000036122 1 1q32.1 chromosome 1 open reading frame 186 protein-coding C1orf186 chromosome 1 open reading frame 186 O uncharacterized protein C1orf186 20121230 -9606 440714 C1orf143 hCG_2045592 - HGNC:32045 1 1q41 chromosome 1 open reading frame 143 unknown C1orf143 chromosome 1 open reading frame 143 O - 20121021 -9606 440716 LOC440716 - - - 1 1q41 uncharacterized LOC440716 unknown - - - - 20120622 -9606 440730 TRIM67 - TNL HGNC:31859|MIM:610584|Ensembl:ENSG00000119283|HPRD:15570|Vega:OTTHUMG00000037958 1 1q42.2 tripartite motif containing 67 protein-coding TRIM67 tripartite motif containing 67 O TRIM9-like protein TNL|tripartite motif-containing 67|tripartite motif-containing protein 67 20121230 -9606 440732 RPS7P3 - RPS7_2_175 HGNC:36518 1 1q42.2 ribosomal protein S7 pseudogene 3 pseudo RPS7P3 ribosomal protein S7 pseudogene 3 O - 20121230 -9606 440737 RPL35P1 - RPL35_1_181 HGNC:36695 1 1q43 ribosomal protein L35 pseudogene 1 pseudo RPL35P1 ribosomal protein L35 pseudogene 1 O - 20121230 -9606 440738 MAP1LC3C - ATG8J|LC3C HGNC:13353|MIM:609605|Ensembl:ENSG00000197769|HPRD:14226|Vega:OTTHUMG00000039865 1 1q43 microtubule-associated protein 1 light chain 3 gamma protein-coding MAP1LC3C microtubule-associated protein 1 light chain 3 gamma O LC3-like protein 2|MAP1 light chain 3-like protein 2|MAP1 light chain 3-like protein 3|MAP1A/MAP1B LC3 C|MAP1A/MAP1B light chain 3 C|autophagy-related protein LC3 C|autophagy-related ubiquitin-like modifier LC3 C|microtubule-associated proteins 1A/1B light chain 3C 20121230 -9606 440742 LOC440742 - - HPRD:18453 1 1q44 uncharacterized LOC440742 unknown - - - - 20121230 -9606 440757 DZANK1-AS1 - - HGNC:43424|HPRD:14632 20 20p11.23 DZANK1 antisense RNA 1 (tail to tail) miscRNA DZANK1-AS1 DZANK1 antisense RNA 1 (tail to tail) O - 20121230 -9606 440766 FLJ26332 - - - 20 20q13.13 uncharacterized LOC440766 protein-coding - - - - 20120508 -9606 440786 LOC440786 - - - 22 22q11.1 uncharacterized LOC440786 other - - - - 20120610 -9606 440792 LOC440792 - - - 22 22q11.21 proline dehydrogenase (oxidase) 1 pseudogene pseudo - - - - 20121230 -9606 440795 CA15P2 - - HGNC:14916 22 22q11.21 carbonic anhydrase XV, pseudogene 2 pseudo CA15P2 carbonic anhydrase XV, pseudogene 2 O - 20121230 -9606 440799 P2RX6P - - HGNC:34076 22 22q11.21 purinergic receptor P2X, ligand-gated ion channel, 6 pseudogene pseudo P2RX6P purinergic receptor P2X, ligand-gated ion channel, 6 pseudogene O - 20121230 -9606 440804 RIMBP3B - RIM-BP3.2|RIM-BP3.B|RIMBP3.2 HGNC:33891|MIM:612700|Ensembl:ENSG00000196934|Vega:OTTHUMG00000150819 22 22q11.21 RIMS binding protein 3B protein-coding RIMBP3B RIMS binding protein 3B O RIMS binding protein 3.2|RIMS-binding protein 3.2|RIMS-binding protein 3B 20121209 -9606 440822 PIWIL3 - HIWI3 HGNC:18443|MIM:610314|Ensembl:ENSG00000184571|HPRD:17855|Vega:OTTHUMG00000150788 22 22q11.23 piwi-like 3 (Drosophila) protein-coding PIWIL3 piwi-like 3 (Drosophila) O piwi-like protein 3 20121230 -9606 440823 MIAT - C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2 HGNC:33425|MIM:611082 22 22q12.1 myocardial infarction associated transcript (non-protein coding) miscRNA MIAT myocardial infarction associated transcript (non-protein coding) O - 20121230 -9606 440829 SHISA8 C22:CTA-250D10.9 C22orf17|Orf26 HGNC:18351 22 22q13.2 shisa homolog 8 (Xenopus laevis) protein-coding SHISA8 shisa homolog 8 (Xenopus laevis) O CTA-250D10.17|putative protein shisa-8 20121230 -9606 440836 ODF3B - ODF3L3 HGNC:34388|Ensembl:ENSG00000177989|HPRD:18640|Vega:OTTHUMG00000150334 22 22q13.33 outer dense fiber of sperm tails 3B protein-coding ODF3B outer dense fiber of sperm tails 3B O orf2 5' to PD-ECGF/TP|outer dense fiber protein 3-like protein 3|outer dense fiber protein 3B 20121230 -9606 440854 CAPN14 - - HGNC:16664|MIM:610229|Ensembl:ENSG00000214711|Vega:OTTHUMG00000152039 2 2p23.1-p21 calpain 14 protein-coding CAPN14 calpain 14 O CANP 14|calcium-activated neutral proteinase 14|calpain-14 20121230 -9606 440862 FLJ41757 - - - 2 2p21 uncharacterized LOC440862 unknown - - - - 20121230 -9606 440864 LOC440864 - - - 2 2p16.3 uncharacterized LOC440864 protein-coding - - - - 20120511 -9606 440865 FLJ46838 - - HPRD:17005 2 2p16.3 FLJ46838 protein unknown - - - - 20120511 -9606 440867 FLJ16124 - - HPRD:16909 2 2p14 FLJ16124 protein unknown - - - - 20120710 -9606 440888 ACTR3BP2 - FKSG73 HGNC:38677 2 2p11.1 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2 pseudo ACTR3BP2 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2 O - 20121230 -9606 440894 LOC440894 - - - 2 2q13 uncharacterized LOC440894 miscRNA - - - - 20121230 -9606 440895 LOC440895 - - Ensembl:ENSG00000186148|Vega:OTTHUMG00000153222 2 2q13 two pore channel 3 pseudogene pseudo - - - - 20121230 -9606 440896 LOC440896 - - - 9 9q21.11 uncharacterized LOC440896 miscRNA - - - - 20121230 -9606 440900 LOC440900 - - - 2 2q14.1 uncharacterized LOC440900 miscRNA - - - - 20121230 -9606 440902 LOC440902 - - - 2 2q14.3 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 440905 LOC440905 - - HPRD:18454 2 2q21.1 uncharacterized LOC440905 miscRNA - - - - 20121230 -9606 440910 LOC440910 - - - 2 2q21.1 uncharacterized LOC440910 miscRNA - - - - 20121230 -9606 440915 POTEKP FKSG30 ACT|ACTBL3|POTE2delta|POTEK HGNC:30182|MIM:611266|HPRD:18642 2 2q21.1 POTE ankyrin domain family, member K, pseudogene pseudo POTEKP POTE ankyrin domain family, member K, pseudogene O - 20121230 -9606 440917 LOC440917 - - - 2 2q22.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene pseudo - - - - 20121230 -9606 440918 FLJ46875 - - - 2 2q24.1 uncharacterized LOC440918 protein-coding - - - - 20120622 -9606 440925 LOC440925 - - HPRD:18455 2 2q31.1 uncharacterized LOC440925 miscRNA - - - - 20121230 -9606 440926 H3F3AP4 - p13 HGNC:42980 2 2q31.1 H3 histone, family 3A, pseudogene 4 pseudo H3F3AP4 H3 histone, family 3A, pseudogene 4 O - 20121230 -9606 440934 LOC440934 - - - 2 2q36.1 uncharacterized LOC440934 unknown - - - - 20121230 -9606 440944 SETD5-AS1 - THUMPD3-AS1 HGNC:44478 3 3p25.3 SETD5 antisense RNA 1 miscRNA SETD5-AS1 SETD5 antisense RNA 1 O - 20121230 -9606 440952 EIF1B-AS1 - - HGNC:44555 3 3p22.1 EIF1B antisense RNA 1 miscRNA EIF1B-AS1 EIF1B antisense RNA 1 O - 20121230 -9606 440955 TMEM89 - - HGNC:32372|Ensembl:ENSG00000183396|HPRD:17401|Vega:OTTHUMG00000156647 3 3p21.31 transmembrane protein 89 protein-coding TMEM89 transmembrane protein 89 O - 20121230 -9606 440956 IQCF6 - - HGNC:35158 3 3p21.2 IQ motif containing F6 protein-coding IQCF6 IQ motif containing F6 O IQ domain-containing protein F6 20121230 -9606 440957 SMIM4 - C3orf78 HGNC:37257|Ensembl:ENSG00000168273|Vega:OTTHUMG00000158726 3 3p21.1 small integral membrane protein 4 protein-coding SMIM4 small integral membrane protein 4 O UPF0640 protein C3orf78 20121230 -9606 440970 LOC440970 - - - 3 3p12.1 uncharacterized LOC440970 miscRNA - - - - 20121230 -9606 440973 LOC440973 - - - 3 3q13.13 nuclear transcription factor Y, beta pseudogene pseudo - - - - 20121230 -9606 440981 LOC440981 - - - 3 3q24 phospholipid scramblase-like protein-coding - - - phospholipid scramblase 1-like|uncharacterized protein LOC440981 20121230 -9606 440982 FLJ30375 - - - 3 3q24 uncharacterized LOC440982 unknown - - - - 20121230 -9606 440991 RPS3P3 - RPS3_1_443 HGNC:36700 3 3q27.1 ribosomal protein S3 pseudogene 3 pseudo RPS3P3 ribosomal protein S3 pseudogene 3 O - 20121230 -9606 440992 RPS20P14 - RPS20_6_446 HGNC:36692 3 3q27.3 ribosomal protein S20 pseudogene 14 pseudo RPS20P14 ribosomal protein S20 pseudogene 14 O - 20121230 -9606 440993 LOC440993 - - HPRD:18457 3 3q29 uncharacterized LOC440993 unknown - - - - 20121230 -9606 441009 LOC441009 - - - 4 4p15.33 uncharacterized LOC441009 miscRNA - - - - 20121230 -9606 441013 RPS2P21 - RPS2_5_473 HGNC:35591 4 4p13 ribosomal protein S2 pseudogene 21 pseudo RPS2P21 ribosomal protein S2 pseudogene 21 O - 20121230 -9606 441024 MTHFD2L - - HGNC:31865|MIM:614047|Ensembl:ENSG00000163738|HPRD:17608|Vega:OTTHUMG00000157135 4 4q13.3 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like protein-coding MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like O MTHFD2-like|NADP-dependent methylenetetrahydrofolate dehydrogenase 2-like protein|probable bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2 20121230 -9606 441025 LOC441025 - - - 4 4q21.1 uncharacterized LOC441025 miscRNA - - - - 20121230 -9606 441026 LOC441026 - - - 4 4q21.22 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 441027 TMEM150C - - HGNC:37263|Ensembl:ENSG00000249242|Vega:OTTHUMG00000161083 4 4q21.22 transmembrane protein 150C protein-coding TMEM150C transmembrane protein 150C O - 20121230 -9606 441032 EEF1A1P9 - EEF1AL7 HGNC:3204 4 4q24 eukaryotic translation elongation factor 1 alpha 1 pseudogene 9 pseudo EEF1A1P9 eukaryotic translation elongation factor 1 alpha 1 pseudogene 9 O - 20121230 -9606 441034 RPL7AP30 - RPL7A_9_511 HGNC:35757 4 4q25 ribosomal protein L7a pseudogene 30 pseudo RPL7AP30 ribosomal protein L7a pseudogene 30 O - 20121230 -9606 441035 LOC441035 - - - 4 4q26 uncharacterized LOC441035 unknown - - - - 20120726 -9606 441046 GUSBP5 - GYPELOC441046 HGNC:42319|HPRD:17402 4 4q31.21 glucuronidase, beta pseudogene 5 pseudo GUSBP5 glucuronidase, beta pseudogene 5 O - 20121230 -9606 441050 PTGES3P3 hCG_2026038 PTGES3P HGNC:43823 4 4q33 prostaglandin E synthase 3 (cytosolic) pseudogene 3 pseudo PTGES3P3 prostaglandin E synthase 3 (cytosolic) pseudogene 3 O - 20121230 -9606 441051 HSP90AA6P - HSP90Af HGNC:32536 4 4q33 heat shock protein 90kDa alpha (cytosolic), class A member 6, pseudogene pseudo HSP90AA6P heat shock protein 90kDa alpha (cytosolic), class A member 6, pseudogene O - 20121230 -9606 441052 LOC441052 - - - 4 4q34.1 uncharacterized LOC441052 unknown - - - - 20120511 -9606 441054 C4orf47 Chr4_1746 - HGNC:34346|Ensembl:ENSG00000205129|Vega:OTTHUMG00000160458 4 4q35.1 chromosome 4 open reading frame 47 protein-coding C4orf47 chromosome 4 open reading frame 47 O UPF0602 protein C4orf47 20121230 -9606 441056 DUX4L4 - - HGNC:38686|Ensembl:ENSG00000258834|Vega:OTTHUMG00000161318 4 4q35.2 double homeobox 4 like 4 protein-coding DUX4L4 double homeobox 4 like 4 O double homeobox protein 4-like protein 4 20121230 -9606 441058 MGC39584 - - HPRD:17542 4 4q35.2 uncharacterized LOC441058 miscRNA - - - - 20121230 -9606 441061 MARCH11 - MARCH-XI HGNC:33609|MIM:613338|Ensembl:ENSG00000183654|Vega:OTTHUMG00000161789 5 5p15.1 membrane-associated ring finger (C3HC4) 11 protein-coding MARCH11 membrane-associated ring finger (C3HC4) 11 O E3 ubiquitin-protein ligase MARCH11|membrane-associated RING finger protein 11|membrane-associated RING-CH protein XI 20121230 -9606 441066 GUSBP8 - - HGNC:42322 5 5q21.1 glucuronidase, beta pseudogene 8 pseudo GUSBP8 glucuronidase, beta pseudogene 8 O - 20121230 -9606 441072 FLJ31104 - - - 5 5q11.2 uncharacterized LOC441072 miscRNA - - - - 20121230 -9606 441073 RPL26P19 - RPL26_4_565 HGNC:36393 5 5q11.2 ribosomal protein L26 pseudogene 19 pseudo RPL26P19 ribosomal protein L26 pseudogene 19 O - 20121230 -9606 441081 LOC441081 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121230 -9606 441086 LOC441086 - - - 5 5q13.3 uncharacterized LOC441086 unknown - - - - 20120511 -9606 441087 LOC441087 - - HPRD:18459 5 5q13.3 uncharacterized LOC441087 unknown - - - - 20120710 -9606 441089 CRSP8P - - - 5 5q14.1 mediator complex subunit 27 pseudogene pseudo - - - - 20121230 -9606 441094 FLJ42709 - - - 5 5q15 uncharacterized LOC441094 miscRNA - - - - 20121230 -9606 441098 LOC441098 - - - 5 5q21.1 putative POM121-like protein 1-like protein-coding - - - - 20121222 -9606 441108 C5orf56 - - HGNC:33838|HPRD:18460 5 5q31.1 chromosome 5 open reading frame 56 miscRNA C5orf56 chromosome 5 open reading frame 56 O - 20121230 -9606 441114 RPLP0P9 - - - 5 5q34 ribosomal protein, large, P0 pseudogene pseudo - - - - 20121230 -9606 441116 FLJ16171 - - HPRD:16911 5 5q35.2 FLJ16171 protein miscRNA - - - - 20121230 -9606 441123 LINC00266-3 - C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 HGNC:21112 6 6p25.3 long intergenic non-protein coding RNA 266-3 miscRNA LINC00266-3 long intergenic non-protein coding RNA 266-3 O - 20121021 -9606 441124 LOC441124 - - - 1 1q42.11 uncharacterized LOC441124 protein-coding - - - - 20121230 -9606 441131 ARPC3P5 - - HGNC:39435 6 6p22.3 actin related protein 2/3 complex, subunit 3 pseudogene 5 pseudo ARPC3P5 actin related protein 2/3 complex, subunit 3 pseudogene 5 O - 20121230 -9606 441132 IMPDH1P9 - - HGNC:33964 6 6p22.3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 9 pseudo IMPDH1P9 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 9 O - 20121230 -9606 441133 KRT18P38 - - HGNC:33407 6 6p22.3 keratin 18 pseudogene 38 pseudo KRT18P38 keratin 18 pseudogene 38 O - 20121230 -9606 441150 C6orf226 - - HGNC:34431|Ensembl:ENSG00000221821|HPRD:17403|Vega:OTTHUMG00000156926 6 6p21.1 chromosome 6 open reading frame 226 protein-coding C6orf226 chromosome 6 open reading frame 226 O uncharacterized protein C6orf226 20121230 -9606 441151 TMEM151B RP11-444E17.5 C6orf137|TMEM193|bA444E17.5 HGNC:21315|Ensembl:ENSG00000178233|Vega:OTTHUMG00000014765 6 6p21.1 transmembrane protein 151B protein-coding TMEM151B transmembrane protein 151B O transmembrane protein 193 20121230 -9606 441154 RPL7AP34 - RPL7A_14_708 HGNC:36778 6 6q12 ribosomal protein L7a pseudogene 34 pseudo RPL7AP34 ribosomal protein L7a pseudogene 34 O - 20121230 -9606 441155 LOC441155 RP11-74E24.2 - - 6 6q12 zinc finger CCCH-type domain-containing-like protein-coding - - - zinc finger CCCH-type containing 11A-like 20121230 -9606 441160 KRT19P1 - - HGNC:33422 6 6q13 keratin 19 pseudogene 1 pseudo KRT19P1 keratin 19 pseudogene 1 O - 20121230 -9606 441161 OOEP hCG_1779612 C6orf156|FLOPED|HOEP19|KHDC2 HGNC:21382|MIM:611689|Ensembl:ENSG00000203907|Vega:OTTHUMG00000150057 6 6q13 oocyte expressed protein protein-coding OOEP oocyte expressed protein O KH homology domain containing 2|KH homology domain-containing protein 2|oocyte and embryo protein 19|oocyte expressed protein homolog (dog)|oocyte- and embryo-specific protein 19|oocyte-expressed protein homolog 20121230 -9606 441166 CNN2P9 - - HGNC:39534 6 6q21 calponin 2 pseudogene 9 pseudo CNN2P9 calponin 2 pseudogene 9 O - 20121230 -9606 441167 LOC441167 hCG_1820801 - - 6 6q21 hCG1820801 unknown - - - - 20121230 -9606 441168 FAM26F RP1-93H18.5 C6orf187|dJ93H18.5 HGNC:33391|Ensembl:ENSG00000188820|HPRD:18644|Vega:OTTHUMG00000015438 6 6q22.1 family with sequence similarity 26, member F protein-coding FAM26F family with sequence similarity 26, member F O protein FAM26F 20121230 -9606 441172 FLJ46906 - - - 6 6q24.1 uncharacterized LOC441172 miscRNA - - - - 20121230 -9606 441177 LINC00602 - - HGNC:43917|HPRD:18645 6 6q27 long intergenic non-protein coding RNA 602 miscRNA LINC00602 long intergenic non-protein coding RNA 602 O - 20121230 -9606 441178 LOC441178 - - - 6 6q27 uncharacterized LOC441178 miscRNA - - - - 20120710 -9606 441179 LOC441179 - - - 6 6q27 uncharacterized LOC441179 unknown - - - - 20121230 -9606 441191 RNF216P1 hCG_2040556 RNF216L|hCG2040556 HGNC:33610 7 7p22.1 ring finger protein 216 pseudogene 1 pseudo RNF216P1 ring finger protein 216 pseudogene 1 O - 20121230 -9606 441194 PMS2CL - PMS2P13 HGNC:30061 7 7p22.1 PMS2 C-terminal like pseudogene pseudo PMS2CL PMS2 C-terminal like pseudogene O - 20121230 -9606 441204 LOC441204 hCG_2009921 - - 7 7p15.2 uncharacterized LOC441204 miscRNA - - - - 20121230 -9606 441208 ZNRF2P1 - - HGNC:42792|HPRD:18648 7 7p14.3 zinc and ring finger 2 pseudogene 1 pseudo ZNRF2P1 zinc and ring finger 2 pseudogene 1 O - 20121230 -9606 441212 RP9P - - HGNC:33969 7 7p14.3 retinitis pigmentosa 9 pseudogene pseudo RP9P retinitis pigmentosa 9 pseudogene O - 20121230 -9606 441218 KRT8P20 - - HGNC:33372 7 7p14.1 keratin 8 pseudogene 20 pseudo KRT8P20 keratin 8 pseudogene 20 O - 20121230 -9606 441228 LOC441228 - - - 7 7p11.2 exportin, tRNA (nuclear export receptor for tRNAs) pseudogene pseudo - - - - 20121230 -9606 441233 LOC441233 - - - 7 7p11.1 uncharacterized LOC441233 unknown - - - - 20120511 -9606 441234 ZNF716 - - HGNC:32458|Ensembl:ENSG00000182111|Vega:OTTHUMG00000156689 7 7p11.2 zinc finger protein 716 protein-coding ZNF716 zinc finger protein 716 O - 20121230 -9606 441238 NMD3P1 - NMD3P HGNC:22672 7 7q11.21 NMD3 homolog (S. cerevisiae) pseudogene 1 pseudo NMD3P1 NMD3 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 441239 LOC441239 - - - 7 7q11.21 uncharacterized LOC441239 protein-coding - - - uncharacterized protein LOC441239 20121230 -9606 441241 LOC441241 - - - 7 7q11.21 vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene pseudo - - - - 20121230 -9606 441242 LOC441242 - - HPRD:18462 7 7q11.21 uncharacterized LOC441242 miscRNA - - - - 20121230 -9606 441246 RPL35P5 hCG_1983332 RPL35_4_812 HGNC:36955 7 7q11.21 ribosomal protein L35 pseudogene 5 pseudo RPL35P5 ribosomal protein L35 pseudogene 5 O - 20121230 -9606 441250 TYW1B - LINC00069|NCRNA00069|RSAFD2 HGNC:33908 7 7q11.23 tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae) protein-coding TYW1B tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae) O long intergenic non-protein coding RNA 69|radical S-adenosyl methionine and flavodoxin domain-containing protein 2|radical S-adenosyl methionine and flavodoxin domains 1|tRNA wybutosine-synthesizing protein 1 homolog B|tRNA-yW synthesizing protein 1 homolog B (non-protein coding) 20121230 -9606 441251 SPDYE7P - - HGNC:35466 7 7q11.23 speedy homolog E7 (Xenopus laevis), pseudogene pseudo SPDYE7P speedy homolog E7 (Xenopus laevis), pseudogene O - 20121230 -9606 441253 LOC441253 - - - 7 7q11.23 nuclear envelope pore membrane LOC441253 protein-coding - - - - 20120511 -9606 441258 LOC441258 - - - 7 7q11.23 Williams Beuren syndrome chromosome region 19 pseudogene pseudo - - - - 20121230 -9606 441259 LOC441259 - - - 7 7q11.23 postmeiotic segregation increased 2 pseudogene pseudo - - - - 20121230 -9606 441261 FDPSP7 - FDPSL2B HGNC:33487 7 7q11.23 farnesyl diphosphate synthase pseudogene 7 pseudo FDPSP7 farnesyl diphosphate synthase pseudogene 7 O - 20121230 -9606 441263 DTX2P1-UPK3BP1-PMS2P11 - PMS2L11|PMS2P11|PMSR6 HGNC:42360 7 7q11.23 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo DTX2P1-UPK3BP1-PMS2P11 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene O - 20121230 -9606 441268 LOC441268 - - HPRD:18463 7 7q21.3 uncharacterized LOC441268 unknown - - - - 20121017 -9606 441272 SPDYE3 tcag7.1017 - HGNC:35462|Ensembl:ENSG00000214300|HPRD:14693|Vega:OTTHUMG00000155462 7 7q22.1 speedy homolog E3 (Xenopus laevis) protein-coding SPDYE3 speedy homolog E3 (Xenopus laevis) O Putative WBSCR19-like protein 7|putative Speedy protein E3|speedy protein E3 20121230 -9606 441273 SPDYE2 - SPDYB2-L1 HGNC:33841|Ensembl:ENSG00000205238|Vega:OTTHUMG00000150385 7 7q22.1 speedy homolog E2 (Xenopus laevis) protein-coding SPDYE2 speedy homolog E2 (Xenopus laevis) O Speedy B2-like 1|putative Speedy protein E2|speedy protein E2 20121230 -9606 441282 AKR1B15 tcag7.1260 AKR1B10L HGNC:37281|Ensembl:ENSG00000227471|Vega:OTTHUMG00000155376 7 7q33 aldo-keto reductase family 1, member B15 protein-coding AKR1B15 aldo-keto reductase family 1, member B15 O aldo-keto reductase family 1 member B15|putative aldo-keto reductase family 1 member B15 20121230 -9606 441294 CTAGE15P - - HGNC:37295|HPRD:17404 7 7q35 CTAGE family, member 15, pseudogene protein-coding CTAGE15P CTAGE family, member 15, pseudogene O CTAGE6-like 20121230 -9606 441295 OR2A9P - FKSG35|HSDJ0798C17|OR2A19|OR2A22P|OR2A9 HGNC:8236 7 7q35 olfactory receptor, family 2, subfamily A, member 9 pseudogene pseudo OR2A9P olfactory receptor, family 2, subfamily A, member 9 pseudogene O - 20121230 -9606 441307 FLJ44511 - - - 7 7p22.3 uncharacterized LOC441307 miscRNA - - - - 20121230 -9606 441308 OR4F21 - OR4F21P HGNC:19583|HPRD:17729 8 8p23.3 olfactory receptor, family 4, subfamily F, member 21 protein-coding OR4F21 olfactory receptor, family 4, subfamily F, member 21 O olfactory receptor 4F21|olfactory receptor, family 4, subfamily F, member 21 pseudogene 20121230 -9606 441310 FLJ00290 - - - 8 8p23.3 FLJ00290 protein unknown - - - - 20120710 -9606 441313 FAM90A4P - FAM90A4 HGNC:32252 8 8p23.1 family with sequence similarity 90, member A4 pseudogene pseudo FAM90A4P family with sequence similarity 90, member A4, pseudogene O - 20121209 -9606 441314 FAM90A13P - FAM90A13 HGNC:32261|MIM:613049 8 8p23.1 putative protein FAM90A13 pseudo FAM90A13P family with sequence similarity 90, member A13, pseudogene O - 20121209 -9606 441315 FAM90A5P - FAM90A5 HGNC:32253|MIM:613043 8 8p23.1 putative protein FAM90A5 pseudo FAM90A5P family with sequence similarity 90, member A5, pseudogene O - 20121209 -9606 441317 FAM90A7P - FAM90A7 HGNC:32255|MIM:613044 8 8p23.1 putative protein FAM90A7 pseudo FAM90A7P family with sequence similarity 90, member A7, pseudogene O - 20121209 -9606 441320 LOC441320 - - - 8 8p23.1 chromosome 11 open reading frame2 pseudogene pseudo - - - - 20121230 -9606 441323 FAM90A16P - FAM90A16 HGNC:32264 8 8p23.1 family with sequence similarity 90, member A16, pseudogene pseudo FAM90A16P family with sequence similarity 90, member A16, pseudogene O - 20121209 -9606 441324 FAM90A8P - FAM90A8 HGNC:32256|MIM:613045 8 8p23.1 putative protein FAM90A8 pseudo FAM90A8P family with sequence similarity 90, member A8, pseudogene O - 20121209 -9606 441326 FAM90A18P - FAM90A18 HGNC:32266|MIM:613052 8 8p23.1 putative protein FAM90A18/FAM90A19 pseudo FAM90A18P family with sequence similarity 90, member A18, pseudogene O - 20121209 -9606 441327 FAM90A9P - FAM90A9 HGNC:32257|MIM:613046 8 8p23.1 putative protein FAM90A9 pseudo FAM90A9P family with sequence similarity 90, member A9, pseudogene O - 20121209 -9606 441328 FAM90A10P - FAM90A10 HGNC:32258|MIM:613047 8 8p23.1 putative protein FAM90A10 pseudo FAM90A10P family with sequence similarity 90, member A10, pseudogene O - 20121230 -9606 441331 FAM90A11P - FAM90A11 HGNC:32259 8 8p23.1 family with sequence similarity 90, member A11 pseudogene pseudo FAM90A11P family with sequence similarity 90, member A11, pseudogene O - 20121230 -9606 441332 FAM90A24P - FAM90A24 HGNC:32272 8 8p23.1 family with sequence similarity 90, member A24 (pseudogene) pseudo FAM90A24P family with sequence similarity 90, member A24, pseudogene O - 20121230 -9606 441347 LOC441347 hCG_1795560 - - 8 8p11.21 hCG1795560 protein-coding - - - - 20111109 -9606 441355 FLJ39080 - - - 8 8q21.11 uncharacterized LOC441355 miscRNA - - - - 20121230 -9606 441359 REXO1L3P - - HGNC:32240 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 3, pseudogene pseudo REXO1L3P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 3, pseudogene O - 20121209 -9606 441361 REXO1L5P - - HGNC:32242 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 5, pseudogene pseudo REXO1L5P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 5, pseudogene O - 20121209 -9606 441362 REXO1L6P - - HGNC:32243 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 6 (pseudogene) pseudo REXO1L6P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 6 (pseudogene) O - 20121230 -9606 441363 REXO1L7P - - HGNC:32244 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 7, pseudogene pseudo REXO1L7P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 7, pseudogene O - 20120720 -9606 441369 FLJ46284 - - - 8 8q22.1 uncharacterized LOC441369 miscRNA - - - - 20121230 -9606 441374 FLJ42969 - - - 8 8q22.3 uncharacterized LOC441374 miscRNA - - - - 20121230 -9606 441376 AARD - C8orf85 HGNC:33842|Ensembl:ENSG00000205002|Vega:OTTHUMG00000164961 8 8q24.11 alanine and arginine rich domain containing protein protein-coding AARD alanine and arginine rich domain containing protein O alanine and arginine-rich domain-containing protein 20121230 -9606 441377 RPS26P35 - RPS26_17_946 HGNC:36229 8 8q24.12 ribosomal protein S26 pseudogene 35 pseudo RPS26P35 ribosomal protein S26 pseudogene 35 O - 20121230 -9606 441381 LRRC24 - LRRC14OS HGNC:28947|Ensembl:ENSG00000254402|HPRD:18651|Vega:OTTHUMG00000165180 8 8q24.3 leucine rich repeat containing 24 protein-coding LRRC24 leucine rich repeat containing 24 O leucine-rich repeat-containing protein 24 20121230 -9606 441386 RPS26P3 RP11-338L20.1 RPS26_11_962|bA338L20.1 HGNC:23411 9 9p23 ribosomal protein S26 pseudogene 3 pseudo RPS26P3 ribosomal protein S26 pseudogene 3 O - 20121230 -9606 441389 FLJ35282 - - - 9 9p21.3 uncharacterized LOC441389 miscRNA - - - - 20121230 -9606 441391 RBMXP2 - - HGNC:23284 9 9p21.1 RNA binding motif protein, X-linked pseudogene 2 pseudo RBMXP2 RNA binding motif protein, X-linked pseudogene 2 O - 20121230 -9606 441394 SUGT1P1 - SGT1P|SUGT1P|bA255A11.1 HGNC:19384|HPRD:18367 9 9p13.3 suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1 pseudo SUGT1P1 suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1 O - 20121230 -9606 441400 RAB1C RP11-613M10.1 - HGNC:23683 9 9p13.2 RAB1C, member RAS oncogene family pseudogene pseudo RAB1C RAB1C, member RAS oncogene family pseudogene O - 20121230 -9606 441402 LOC441402 - - - 9 9p13.1 contactin associated protein-like 3 pseudogene pseudo - - - - 20121230 -9606 441410 LOC441410 - - - 9 9p11.2 FK506 binding protein 4, 59kDa pseudogene pseudo - - - - 20121209 -9606 441416 GPR116P2 - - HGNC:32921 9 9p11.2 G protein-coupled receptor 116 pseudogene 2 pseudo GPR116P2 G protein-coupled receptor 116 pseudogene 2 O - 20121230 -9606 441420 MYO5BP1 - - HGNC:38495 9 9p11.2 myosin VB pseudogene 1 pseudo MYO5BP1 myosin VB pseudogene 1 O - 20121230 -9606 441425 ANKRD20A3 - - HGNC:31981|Ensembl:ENSG00000132498|HPRD:17405|Vega:OTTHUMG00000013276 9 9p12 ankyrin repeat domain 20 family, member A3 protein-coding ANKRD20A3 ankyrin repeat domain 20 family, member A3 O ankyrin repeat domain 20A-related|ankyrin repeat domain-containing protein 20A3 20121230 -9606 441426 LINC00268 - NCRNA00268|NCRNA00268A HGNC:38543|HPRD:18465 9 9p11.2 long intergenic non-protein coding RNA 268 miscRNA LINC00268 long intergenic non-protein coding RNA 268 O - 20120126 -9606 441430 ANKRD20A2 - - HGNC:31979|Ensembl:ENSG00000183148|HPRD:18652|Vega:OTTHUMG00000058641 9 9p12 ankyrin repeat domain 20 family, member A2 protein-coding ANKRD20A2 ankyrin repeat domain 20 family, member A2 O ankyrin repeat domain-containing protein 20A2 20121230 -9606 441432 AQP7P3 - AQPap-3 HGNC:31976|HPRD:17406 9 9p12 aquaporin 7 pseudogene 3 pseudo AQP7P3 aquaporin 7 pseudogene 3 O - 20121230 -9606 441440 RPL7AP46 - RPL7A_20_981 HGNC:35698 9 9q13 ribosomal protein L7a pseudogene 46 pseudo RPL7AP46 ribosomal protein L7a pseudogene 46 O - 20121230 -9606 441441 FLJ41455 - - - 9 9q12 uncharacterized LOC441441 unknown - - - - 20120508 -9606 441442 MYO5BP3 - - HGNC:38497 9 9q13 myosin VB pseudogene 3 pseudo MYO5BP3 myosin VB pseudogene 3 O - 20121230 -9606 441452 SPATA31C1 - FAM75C1 HGNC:27846 9 9q22 SPATA31 subfamily C, member 1 protein-coding SPATA31C1 SPATA31 subfamily C, member 1 O family with sequence similarity 75, member C1|uncharacterized protein LOC441452 20121230 -9606 441454 LOC441454 - - - 9 9q22.33 prothymosin, alpha pseudogene pseudo - - - - 20121230 -9606 441455 LOC441455 - - - 9 9q22.33 makorin ring finger protein 1 pseudogene pseudo - - - - 20121230 -9606 441457 FAM22G RP11-330M2.1 - HGNC:23449|Ensembl:ENSG00000188152|Vega:OTTHUMG00000020305 9 9q22.33 family with sequence similarity 22, member G protein-coding FAM22G family with sequence similarity 22, member G O family with sequence similarity 22, pseudogene|protein FAM22G 20121230 -9606 441459 ANKRD18B RP11-255A11.18-001 bA255A11.3|bA255A11.5 HGNC:23644|Ensembl:ENSG00000230453|HPRD:18466|Vega:OTTHUMG00000019776 9 9p13.3 ankyrin repeat domain 18B protein-coding ANKRD18B ankyrin repeat domain 18B O ankyrin repeat domain-containing protein 18B 20121230 -9606 441461 LOC441461 - - - 9 9q31.1 uncharacterized LOC441461 miscRNA - - - - 20121230 -9606 441476 C9orf173 - - HGNC:37285|Ensembl:ENSG00000197768|HPRD:17408 9 9q34.3 chromosome 9 open reading frame 173 protein-coding C9orf173 chromosome 9 open reading frame 173 O uncharacterized protein C9orf173 20121230 -9606 441478 NRARP RP13-122B23.6 - HGNC:33843|Ensembl:ENSG00000198435|HPRD:17564|Vega:OTTHUMG00000156150 9 9q34.3 NOTCH-regulated ankyrin repeat protein protein-coding NRARP NOTCH-regulated ankyrin repeat protein O notch-regulated ankyrin repeat-containing protein 20121230 -9606 441481 GPX1P1 - GPXL1|GPXL2|GPXP1 HGNC:4560 X Xp22.2 glutathione peroxidase pseudogene 1 pseudo GPX1P1 glutathione peroxidase pseudogene 1 O - 20121230 -9606 441484 HAUS1P2 - - HGNC:43761 X Xp22.13 HAUS augmin-like complex, subunit 1 pseudogene 2 pseudo HAUS1P2 HAUS augmin-like complex, subunit 1 pseudogene 2 O - 20121230 -9606 441487 LOC441487 - - - X Xp21.3 methyltransferase like 1 pseudogene pseudo - - - - 20121230 -9606 441488 LOC441488 hCG_1982709 - - X Xp21.1 transcription factor Dp-1-like pseudogene pseudo - - - - 20121230 -9606 441490 FTH1P18 - FTHL18 HGNC:3988 X Xp21.1 ferritin, heavy polypeptide 1 pseudogene 18 protein-coding FTH1P18 ferritin, heavy polypeptide 1 pseudogene 18 O ferritin, heavy polypeptide-like 18 20121230 -9606 441493 LOC441493 - - - X Xp11.23 uncharacterized LOC441493 unknown - - - - 20121230 -9606 441495 CENPVP2 - - HGNC:43879 X Xp11.22 centromere protein V pseudogene 2 pseudo CENPVP2 centromere protein V pseudogene 2 O - 20121230 -9606 441501 FLJ46446 - - - X Xq13.1 uncharacterized LOC441501 miscRNA - - - - 20121230 -9606 441502 RPS26P11 RP11-366E13.1 RPS26L1|RPS26_22_1784|bA366E13.1 HGNC:31817 X Xq13.1 ribosomal protein S26 pseudogene 11 pseudo RPS26P11 ribosomal protein S26 pseudogene 11 O - 20121230 -9606 441505 LOC441505 - - - X Xq21.2 stress-induced-phosphoprotein 1 pseudogene pseudo - - - - 20121230 -9606 441509 GLRA4 RP5-1055C14.3 - HGNC:31715|Ensembl:ENSG00000188828|Vega:OTTHUMG00000022110 X Xq22.2 glycine receptor, alpha 4 protein-coding GLRA4 glycine receptor, alpha 4 O glycine receptor subunit alpha-4 20121230 -9606 441511 LOC441511 - - - X Xq23 mitofusin-1-like pseudo - - - - 20121230 -9606 441518 FAM127C RP4-809E13.1 CXX1c|MAR8B HGNC:33156|Ensembl:ENSG00000212747|Vega:OTTHUMG00000022464 X Xq26.3 family with sequence similarity 127, member C protein-coding FAM127C family with sequence similarity 127, member C O mammalian retrotransposon derived protein 8B|protein FAM127C 20121230 -9606 441519 CT45A3 RP13-36C9.3 CT45-3|CT45.3|RP13-36C9.1 HGNC:33268|MIM:300794|Ensembl:ENSG00000232417|HPRD:18653|Vega:OTTHUMG00000022491 X Xq26.3 cancer/testis antigen family 45, member A3 protein-coding CT45A3 cancer/testis antigen family 45, member A3 O cancer/testis antigen 45-3|cancer/testis antigen 45A3|cancer/testis antigen CT45-3|cancer/testis antigen family 45 member A3 20121230 -9606 441520 CT45A4 - CT45-4|CT45.4 HGNC:33269|MIM:300795|Ensembl:ENSG00000228836|HPRD:18654|Vega:OTTHUMG00000022489 X Xq26.3 cancer/testis antigen family 45, member A4 protein-coding CT45A4 cancer/testis antigen family 45, member A4 O cancer/testis antigen 45-4/6|cancer/testis antigen 45A4/45A6|cancer/testis antigen CT45-4|cancer/testis antigen family 45 member A4/A6 20121230 -9606 441521 CT45A5 RP13-36C9.6 CT45.5|CT455 HGNC:33270|MIM:300796|Ensembl:ENSG00000242284|HPRD:17573|Vega:OTTHUMG00000022494 X Xq26.3 cancer/testis antigen family 45, member A5 protein-coding CT45A5 cancer/testis antigen family 45, member A5 O cancer/testis antigen 45-5|cancer/testis antigen 45A5|cancer/testis antigen CT45-5|cancer/testis antigen family 45 member A5 20121230 -9606 441525 SPANXN4 - CT11.9 HGNC:33177|MIM:300667|Ensembl:ENSG00000189326|HPRD:18093|Vega:OTTHUMG00000022575 X Xq27.3 SPANX family, member N4 protein-coding SPANXN4 SPANX family, member N4 O cancer/testis antigen family 11, member 9|nuclear-associated protein SPAN-Xn4|sperm protein associated with the nucleus on the X chromosome N4 20121230 -9606 441528 LOC441528 - - - X Xp22.33 uncharacterized LOC441528 unknown - - - - 20121209 -9606 441531 PGAM4 - PGAM-B|PGAM1|PGAM3|dJ1000K24.1 HGNC:21731|MIM:300567|Ensembl:ENSG00000226784|Vega:OTTHUMG00000057865 X Xq13 phosphoglycerate mutase family member 4 protein-coding PGAM4 phosphoglycerate mutase family member 4 O phosphoglycerate mutase 4|phosphoglycerate mutase family 3|phosphoglycerate mutase processed protein|probable phosphoglycerate mutase 4 20121230 -9606 441533 RPL26P37 - RPL26_17_1822 HGNC:36004 Y Yp11.2 ribosomal protein L26 pseudogene 37 pseudo RPL26P37 ribosomal protein L26 pseudogene 37 O - 20121230 -9606 441543 TTTY6B - LINC00128|NCRNA00128|TTTY6|TTY6 HGNC:31887 Y Yq11.223 testis-specific transcript, Y-linked 6B (non-protein coding) miscRNA TTTY6B testis-specific transcript, Y-linked 6B (non-protein coding) O - 20121209 -9606 441548 BTBD7P1 - - HGNC:44875 10 10p13 BTB (POZ) domain containing 7 pseudogene 1 pseudo BTBD7P1 BTB (POZ) domain containing 7 pseudogene 1 O - 20121230 -9606 441549 CDNF - ARMETL1 HGNC:24913|MIM:611233|Ensembl:ENSG00000185267|Vega:OTTHUMG00000017713 10 10p13 cerebral dopamine neurotrophic factor protein-coding CDNF cerebral dopamine neurotrophic factor O ARMET-like protein 1|arginine-rich, mutated in early stage tumors-like 1|conserved dopamine neurotrophic factor 20121230 -9606 441550 RPS4XP11 - RPS4P11|RPS4X_2_1029 HGNC:37013 10 10p11.22 ribosomal protein S4X pseudogene 11 pseudo RPS4XP11 ribosomal protein S4X pseudogene 11 O - 20121230 -9606 441554 DUSPP - HVH4 HGNC:3077 10 10q11.22 dual specificity phosphatase pseudogene pseudo DUSPP dual specificity phosphatase pseudogene O - 20121209 -9606 441572 GAPDHP28 - - HGNC:37780 10 10q23.32 glyceraldehyde 3 phosphate dehydrogenase pseudogene 28 pseudo GAPDHP28 glyceraldehyde 3 phosphate dehydrogenase pseudogene 28 O - 20121230 -9606 441581 FRG2B - - HGNC:33518|Ensembl:ENSG00000225899|Vega:OTTHUMG00000019328 10 10q26.3 FSHD region gene 2 family, member B protein-coding FRG2B FSHD region gene 2 family, member B O FSHD region gene 2 protein family member B|HSA10-FRG2|protein FRG2-like-1 20121230 -9606 441584 SSU72P4 - - HGNC:43623 11 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 4 pseudo SSU72P4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 4 O - 20121230 -9606 441592 LOC441592 - - - 11 11p15.1 MAS-related GPR, member X1 pseudogene pseudo - - - - 20121230 -9606 441601 LOC441601 - - - 11 11p11.12 septin 7 pseudogene pseudo - - - - 20121230 -9606 441608 OR5B3 - OR11-239|OR5B13|OST129 HGNC:8324|Ensembl:ENSG00000172769|HPRD:15038|Vega:OTTHUMG00000167516 11 11q12.1 olfactory receptor, family 5, subfamily B, member 3 protein-coding OR5B3 olfactory receptor, family 5, subfamily B, member 3 O olfactory receptor 5B13|olfactory receptor 5B3|olfactory receptor OR11-239|olfactory receptor, family 5, subfamily B, member 13 20121230 -9606 441609 YWHAZP9 - - HGNC:39030 11 11q12.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 9 pseudo YWHAZP9 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 9 O - 20121230 -9606 441623 FTLP7 - - HGNC:37955 11 11q23.3 ferritin, light polypeptide pseudogene 7 pseudo FTLP7 ferritin, light polypeptide pseudogene 7 O - 20121230 -9606 441630 BRI3P2 - - HGNC:32543 12 12p12.1 brain protein I3 pseudogene 2 pseudo BRI3P2 brain protein I3 pseudogene 2 O - 20121230 -9606 441631 TSPAN11 UNQ1971 VSSW1971 HGNC:30795|Ensembl:ENSG00000110900|Vega:OTTHUMG00000168484 12 12p11.21 tetraspanin 11 protein-coding TSPAN11 tetraspanin 11 O tetraspanin-11|tspan-11 20121230 -9606 441632 RPL13AP22 - RPL13A_9_1223 HGNC:35825 12 12p11.21 ribosomal protein L13a pseudogene 22 pseudo RPL13AP22 ribosomal protein L13a pseudogene 22 O - 20121230 -9606 441639 OR9K2 - OR12-2 HGNC:15339|Ensembl:ENSG00000170605|HPRD:15090|Vega:OTTHUMG00000169827 12 12q13.2 olfactory receptor, family 9, subfamily K, member 2 protein-coding OR9K2 olfactory receptor, family 9, subfamily K, member 2 O olfactory receptor 9K2|olfactory receptor OR12-2 20121230 -9606 441641 RPL13AP23 - RPL13A_10_1240 HGNC:36498 12 12q13.3 ribosomal protein L13a pseudogene 23 pseudo RPL13AP23 ribosomal protein L13a pseudogene 23 O - 20121230 -9606 441642 RPL7AP9 - RPL7AP59|RPL7A_24_1258|rpL7a HGNC:32398 12 12q21.2 ribosomal protein L7a pseudogene 9 pseudo RPL7AP9 ribosomal protein L7a pseudogene 9 O - 20121230 -9606 441644 LOC441644 - - - 12 12q22 REST corepressor 2 pseudogene pseudo - - - - 20121230 -9606 441654 SMPD4P2 RP11-408E5.3 - HGNC:39674 13 13q12.11 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 2 pseudo SMPD4P2 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 2 O - 20121230 -9606 441662 TET1P1 - CXXC6P1 HGNC:33586 13 13q31.2 tet methylcytosine dioxygenase 1 pseudogene 1 pseudo TET1P1 tet methylcytosine dioxygenase 1 pseudogene 1 O - 20121230 -9606 441666 LOC441666 - - - 10 10q11.21 zinc finger protein 91 pseudogene pseudo - - - - 20121230 -9606 441669 OR4Q3 - C14orf13|HSA6|OR14-3|OR4Q4|c14_5008 HGNC:15426|HPRD:17732 14 14q11.2 olfactory receptor, family 4, subfamily Q, member 3 protein-coding OR4Q3 olfactory receptor, family 4, subfamily Q, member 3 O olfactory receptor 4Q3|olfactory receptor 4Q4|olfactory receptor OR14-3|olfactory receptor, family 4, subfamily Q, member 4 20121230 -9606 441670 OR4M1 - OR14-7 HGNC:14735|Ensembl:ENSG00000176299|HPRD:14983|Vega:OTTHUMG00000170599 14 14q11.2 olfactory receptor, family 4, subfamily M, member 1 protein-coding OR4M1 olfactory receptor, family 4, subfamily M, member 1 O olfactory receptor 4M1|olfactory receptor OR14-7 20121230 -9606 441687 TEX21P - - HGNC:35455 14 14q23.3 testis expressed 21, pseudogene pseudo TEX21P testis expressed 21, pseudogene O - 20121230 -9606 441711 LOC441711 - - - 15 15q11.2 RING finger protein 145-like pseudo - - - - 20121230 -9606 441722 LOC441722 - - - 15 15q14 U2 small nuclear RNA auxiliary factor 1-like 4 pseudogene pseudo - - - - 20121230 -9606 441726 RPL28P4 - RPL28_1_1435 HGNC:36618 15 15q21.3 ribosomal protein L28 pseudogene 4 pseudo RPL28P4 ribosomal protein L28 pseudogene 4 O - 20121230 -9606 441727 RPL36AP45 - RPL36A_20_1453 HGNC:36032 15 15q24.2 ribosomal protein L36a pseudogene 45 pseudo RPL36AP45 ribosomal protein L36a pseudogene 45 O - 20121230 -9606 441728 LOC441728 - - - 15 15q24.2 golgin-like unknown - - - - 20121230 -9606 441733 PRKXP1 - - HGNC:9442 15 15q26.3 protein kinase, X-linked, pseudogene 1 pseudo PRKXP1 protein kinase, X-linked, pseudogene 1 O - 20121230 -9606 441736 LOC441736 - - - 15 15q26.3 golgin A8 family, member A pseudogene pseudo - - - - 20121230 -9606 441744 RPS16P7 - RPS16_4_1467 HGNC:36505 16 16p13.3 ribosomal protein S16 pseudogene 7 pseudo RPS16P7 ribosomal protein S16 pseudogene 7 O - 20121230 -9606 441750 LOC441750 - - - 16 16p12.3 chromosome 12 open reading frame 49 pseudogene pseudo - - - - 20121230 -9606 441768 LOC441768 - - - 16 16q11.2 RAB31, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 441771 MT1CP - - HGNC:7395 16 16q12.2 metallothionein 1C, pseudogene pseudo MT1CP metallothionein 1C, pseudogene O - 20121230 -9606 441774 RPS4Y1P1 - RPS4Y_1_1499 HGNC:36893 16 16q23.1 ribosomal protein S4Y pseudogene 1 pseudo RPS4Y1P1 ribosomal protein S4Y pseudogene 1 O - 20121230 -9606 441775 RPL18P13 - RPL18_5_1500 HGNC:35599 16 16q23.1 ribosomal protein L18 pseudogene 13 pseudo RPL18P13 ribosomal protein L18 pseudogene 13 O - 20121230 -9606 441781 RPL23AP76 - RPL23A_31_1517 HGNC:36555 17 17p12 ribosomal protein L23a pseudogene 76 pseudo RPL23AP76 ribosomal protein L23a pseudogene 76 O - 20121230 -9606 441783 LOC441783 - - - 17 17p11.2 POTE ankyrin domain family, member I pseudogene pseudo - - - - 20121230 -9606 441784 LOC441784 - - - 17 17p11.2 TBC1 domain family, member 25 pseudogene pseudo - - - - 20121230 -9606 441795 HMGB3P27 - - HGNC:39319 17 17q21.2 high mobility group box 3 pseudogene 27 pseudo HMGB3P27 high mobility group box 3 pseudogene 27 O - 20121230 -9606 441806 LOC441806 - - - 18 18p11.32 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 pseudogene pseudo - - - - 20121230 -9606 441818 WBP11P1 - HsT3017 HGNC:26250 18 18q12.1 WW domain binding protein 11 pseudogene 1 pseudo WBP11P1 WW domain binding protein 11 pseudogene 1 O - 20121230 -9606 441843 ZNF209P - ZNF209 HGNC:13000 19 19p12 zinc finger protein 209, pseudogene pseudo ZNF209P zinc finger protein 209, pseudogene O - 20121230 -9606 441849 MSRB1P1 - - HGNC:43985 19 19q13.2 methionine sulfoxide reductase B1 pseudogene 1 pseudo MSRB1P1 methionine sulfoxide reductase B1 pseudogene 1 O - 20121230 -9606 441862 LOC441862 - - - 19 19q13.41 DUT pseudogene pseudo - - - - 20121230 -9606 441864 TARM1 - OLT-2 HGNC:37250|Ensembl:ENSG00000248385 19 19q13.42 T cell-interacting, activating receptor on myeloid cells 1 protein-coding TARM1 T cell-interacting, activating receptor on myeloid cells 1 O OSCAR-like transcript-2 protein|T-cell-interacting, activating receptor on myeloid cells protein 1 20121230 -9606 441869 ANKRD65 hCG_20426 - HGNC:42950|Ensembl:ENSG00000235098|Vega:OTTHUMG00000002911 1 1p36.33 ankyrin repeat domain 65 protein-coding ANKRD65 ankyrin repeat domain 65 O ankyrin repeat domain-containing protein 65 20121230 -9606 441870 LOC441870 - - - 1 1p36.21 PRAME family member 10-like pseudo - - - - 20121230 -9606 441871 PRAMEF7 - - HGNC:28415|Ensembl:ENSG00000204510|HPRD:17409|Vega:OTTHUMG00000001982 1 1p36.21 PRAME family member 7 protein-coding PRAMEF7 PRAME family member 7 O - 20121230 -9606 441873 PRAMEF25 - - - 1 1p36.21 PRAME family member 25-like protein-coding - - - Putative PRAME family member 25 20121216 -9606 441876 RPS16P1 - RPS16_1_14 HGNC:36462 1 1p36.21 ribosomal protein S16 pseudogene 1 pseudo RPS16P1 ribosomal protein S16 pseudogene 1 O - 20121230 -9606 441878 RPS4XP4 - RPS4P4|RPS4X_1_17 HGNC:36545 1 1p36.12 ribosomal protein S4X pseudogene 4 pseudo RPS4XP4 ribosomal protein S4X pseudogene 4 O - 20121230 -9606 441880 LOC441880 - - - 1 1p35.2 eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 441884 CALR4P - - HGNC:35456 1 1p32.3 calreticulin 4, pseudogene pseudo CALR4P calreticulin 4, pseudogene O - 20121230 -9606 441887 LOC441887 - - - 1 1p31.3 DnaJ (Hsp40) homolog, subfamily C, member 7 pseudogene pseudo - - - - 20121230 -9606 441891 WDR82P2 - WDR82C HGNC:33513 1 1p22.2 WD repeat domain 82 pseudogene 2 pseudo WDR82P2 WD repeat domain 82 pseudogene 2 O - 20121230 -9606 441893 GAPDHP29 - - HGNC:37781 1 1p21.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 29 pseudo GAPDHP29 glyceraldehyde 3 phosphate dehydrogenase pseudogene 29 O - 20121230 -9606 441896 RPL7P8 - RPL7_2_84 HGNC:35914 1 1p13.3 ribosomal protein L7 pseudogene 8 pseudo RPL7P8 ribosomal protein L7 pseudogene 8 O - 20121230 -9606 441897 PGCP1 - - HGNC:39503 1 1p13.2 progastricsin (pepsinogen C) pseudogene 1 pseudo PGCP1 progastricsin (pepsinogen C) pseudogene 1 O - 20121230 -9606 441898 RPS15AP9 hCG_1642034 RPS15A_2_91 HGNC:36164 1 1p13.1 ribosomal protein S15a pseudogene 9 pseudo RPS15AP9 ribosomal protein S15a pseudogene 9 O - 20121230 -9606 441899 VPS25P1 - - HGNC:44250 1 1p12 vacuolar protein sorting 25 homolog (S. cerevisiae) pseudogene 1 pseudo VPS25P1 vacuolar protein sorting 25 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 441900 HSD3BP3 - - HGNC:5221 1 1p13.1 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 3 pseudo HSD3BP3 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 3 O - 20121230 -9606 441904 LOC441904 - - - 1 1q21.1 autoantigen La-like pseudo - - - - 20121230 -9606 441907 LOC441907 - - - 1 1q21.2 ribosomal protein L6 pseudogene pseudo - - - - 20121230 -9606 441908 NBPF18P RP11-139D23.6 - HGNC:31998 1 1q21.3 neuroblastoma breakpoint family, member 18, pseudogene pseudo NBPF18P neuroblastoma breakpoint family, member 18, pseudogene O - 20121230 -9606 441911 OR10J3 RP11-550P17.4 OR1-25|OR10J3P HGNC:14992|Ensembl:ENSG00000196266|HPRD:17672|Vega:OTTHUMG00000037233 1 1q23.2 olfactory receptor, family 10, subfamily J, member 3 protein-coding OR10J3 olfactory receptor, family 10, subfamily J, member 3 O olfactory receptor 10J3|olfactory receptor OR1-25 pseudogene|olfactory receptor, family 10, subfamily J, member 3 pseudogene 20121230 -9606 441914 LOC441914 - - - 1 1q24.2 dynactin 5 (p25) pseudogene pseudo - - - - 20121230 -9606 441915 SLC25A38P1 - - HGNC:43858 1 1q24.3 solute carrier family 25, member 38 pseudogene 1 pseudo SLC25A38P1 solute carrier family 25, member 38 pseudogene 1 O - 20121230 -9606 441925 BECN1P1 - BECN1L1 HGNC:38606 1 1q43 beclin 1, autophagy related, pseudogene 1 pseudo BECN1P1 beclin 1, autophagy related, pseudogene 1 O - 20121230 -9606 441931 VN1R17P - GPCR HGNC:37331 1 1q44 vomeronasal 1 receptor 17 pseudogene pseudo VN1R17P vomeronasal 1 receptor 17 pseudogene O - 20121230 -9606 441932 OR2W5 - OR2W5P|OST722 HGNC:15424|HPRD:17715 1 1q44 olfactory receptor, family 2, subfamily W, member 5 protein-coding OR2W5 olfactory receptor, family 2, subfamily W, member 5 O olfactory receptor 2W5|olfactory receptor, family 2, subfamily W, member 5 pseudogene|putative olfactory receptor 2W5 20121230 -9606 441933 OR13G1 - OR1-37 HGNC:14999|MIM:611677|Ensembl:ENSG00000197437|HPRD:17680|Vega:OTTHUMG00000040212 1 1q44 olfactory receptor, family 13, subfamily G, member 1 protein-coding OR13G1 olfactory receptor, family 13, subfamily G, member 1 O olfactory receptor 13G1|olfactory receptor OR1-37 20121230 -9606 441940 LIN28AP3 - - HGNC:38057 20 20p12.2 lin-28 homolog A (C. elegans) pseudogene 3 pseudo LIN28AP3 lin-28 homolog A (C. elegans) pseudogene 3 O - 20121230 -9606 441951 ZNFX1-AS1 - C20orf199|HSUP1|HSUP2|NCRNA00275|ZFAS1 HGNC:33101 20 20q13.13 ZNFX1 antisense RNA 1 miscRNA ZNFX1-AS1 ZNFX1 antisense RNA 1 O - 20121230 -9606 441956 LOC441956 - - HPRD:18467 21 21q11.2 uncharacterized LOC441956 unknown - - - - 20121230 -9606 441957 FEM1AP1 - FEM1DP HGNC:17219 21 21q11.2 fem-1 homolog a (C. elegans) pseudogene 1 pseudo FEM1AP1 fem-1 homolog a (C. elegans) pseudogene 1 O - 20121230 -9606 441958 GXYLT1P2 - - HGNC:39677 21 21q11.2 glucoside xylosyltransferase 1 pseudogene 2 pseudo GXYLT1P2 glucoside xylosyltransferase 1 pseudogene 2 O - 20121230 -9606 441996 LOC441996 - - - 22 22q12.3 aconitase 2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 442006 LOC442006 - - - 2 2p25.2 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 442013 LDHAP3 - LDHAL3 HGNC:6538 2 2p21 lactate dehydrogenase A pseudogene 3 pseudo LDHAP3 lactate dehydrogenase A pseudogene 3 O - 20121230 -9606 442017 LOC442017 - - - 2 2p16.1 interferon induced transmembrane protein 3 pseudogene pseudo - - - - 20121230 -9606 442028 LOC442028 - - - 2 2q11.1 uncharacterized LOC442028 miscRNA - - - - 20121230 -9606 442038 SULT1C3 - ST1C3 HGNC:33543|Ensembl:ENSG00000196228|HPRD:18131|Vega:OTTHUMG00000153227 2 2q12.3 sulfotransferase family, cytosolic, 1C, member 3 protein-coding SULT1C3 sulfotransferase family, cytosolic, 1C, member 3 O sulfotransferase 1C3 20121230 -9606 442041 LOC442041 - - - 2 2q13 zinc finger protein 532 pseudogene pseudo - - - - 20121230 -9606 442042 LOC442042 - - - 2 2q13 polymerase (RNA) II (DNA directed) polypeptide D pseudogene pseudo - - - - 20121230 -9606 442058 LOC442058 - - - 2 2q31.1 replication protein A3, 14kDa pseudogene pseudo - - - - 20121230 -9606 442060 LOC442060 - - - 2 2q31.3 Sin3A-associated protein, 18kDa pseudogene pseudo - - - - 20121230 -9606 442063 LOC442063 - - - 2 2q33.1 family with sequence similarity 64, member A pseudogene pseudo - - - - 20121230 -9606 442064 LOC442064 - - - 2 2q33.2 phosphatidylinositol glycan anchor biosynthesis, class Y pseudogene pseudo - - - - 20121230 -9606 442075 LOC442075 - - - 3 3p25.3 uncharacterized LOC442075 pseudo - - - - 20121230 -9606 442078 KRT8P18 - - HGNC:33370 3 3p22.3 keratin 8 pseudogene 18 pseudo KRT8P18 keratin 8 pseudogene 18 O - 20121230 -9606 442083 HSP90AB5P - HSP90BE HGNC:32539 3 3p13 heat shock protein 90kDa alpha (cytosolic), class B member 5, pseudogene pseudo HSP90AB5P heat shock protein 90kDa alpha (cytosolic), class B member 5, pseudogene O - 20121230 -9606 442086 RPL10P7 - RPL10_2_395 HGNC:35974 3 3q13.33 ribosomal protein L10 pseudogene 7 pseudo RPL10P7 ribosomal protein L10 pseudogene 7 O - 20121230 -9606 442087 LOC442087 - - - 3 3q13.33 prostate tumor overexpressed 1 pseudogene pseudo - - - - 20121230 -9606 442092 ARVP6125 UNQ6125 - - 3 3q22.1 uncharacterized LOC442092 unknown - - - - 20121230 -9606 442097 LOC442097 - - - 3 3q26.31 actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 442098 LOC442098 - - - 3 3q26.33 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene pseudo - - - - 20121230 -9606 442101 OR7E162P - OR7E77|OR7E77P|OST060 HGNC:28374 4 4p16.3 olfactory receptor, family 7, subfamily E, member 162 pseudogene pseudo OR7E162P olfactory receptor, family 7, subfamily E, member 162 pseudogene O - 20121230 -9606 442104 OR7E86P - - HGNC:14694 4 4p16.1 olfactory receptor, family 7, subfamily E, member 86 pseudogene pseudo OR7E86P olfactory receptor, family 7, subfamily E, member 86 pseudogene O - 20121230 -9606 442105 OR7E85P - OR7E118P|OR7E88P HGNC:14692 4 4p16.1 olfactory receptor, family 7, subfamily E, member 85 pseudogene pseudo OR7E85P olfactory receptor, family 7, subfamily E, member 85 pseudogene O - 20121230 -9606 442108 RPL22P13 - RPL22_7_478 HGNC:36352 4 4q12 ribosomal protein L22 pseudogene 13 pseudo RPL22P13 ribosomal protein L22 pseudogene 13 O - 20121230 -9606 442112 SERBP1P5 - - HGNC:44632 4 4q21.21 SERPINE1 mRNA binding protein 1 pseudogene 5 pseudo SERBP1P5 SERPINE1 mRNA binding protein 1 pseudogene 5 O - 20121230 -9606 442113 LOC442113 - - - 4 4q21.22 protein tyrosine phosphatase, non-receptor type 11 pseudogene pseudo - - - - 20121230 -9606 442114 KRT19P3 - - HGNC:33424 4 4q25 keratin 19 pseudogene 3 pseudo KRT19P3 keratin 19 pseudogene 3 O - 20121230 -9606 442117 GALNTL6 - GALNT17 HGNC:33844|Ensembl:ENSG00000174473|Vega:OTTHUMG00000160807 4 4q34.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6 protein-coding GALNTL6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6 O GaNTase 17|GalNAc transferase 17|UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 17|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 20|galNAc-T17|polypeptide GalNAc transferase 17|polypeptide N-acetylgalactosaminyltransferase-like 6|pp-GaNTase 17|protein-UDP acetylgalactosaminyltransferase 17|putative polypeptide N-acetylgalactosaminyltransferase 17 20121230 -9606 442122 LOC442122 - - - 4 4q35.1 uncharacterized LOC442122 unknown - - - - 20120511 -9606 442131 LOC442131 - - - 5 5p15.32 asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 442132 LOC442132 - - - 5 5p15.31 golgin A6 family-like 1 pseudogene pseudo - - - - 20121230 -9606 442142 SOX30P1 - - HGNC:35122 5 5q33.3 SRY (sex determining region Y)-box 30 pseudogene 1 pseudo SOX30P1 SRY (sex determining region Y)-box 30 pseudogene 1 O - 20121230 -9606 442153 PSMC1P11 - - HGNC:39786 6 6p25.1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 11 pseudo PSMC1P11 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 11 O - 20121230 -9606 442155 LOC442155 - - - 6 6p25.1 transcription factor B2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 442156 PKMP5 - - HGNC:44247 6 6p25.1 pyruvate kinase, muscle pseudogene 5 pseudo PKMP5 pyruvate kinase, muscle pseudogene 5 O - 20121230 -9606 442157 LOC442157 - - - 6 6p24.3 heterogeneous nuclear ribonucleoprotein L pseudogene pseudo - - - - 20121230 -9606 442158 RPS26P29 RP11-288G3.3 RPS26_6_653 HGNC:36456 6 6p24.3 ribosomal protein S26 pseudogene 29 pseudo RPS26P29 ribosomal protein S26 pseudogene 29 O - 20121230 -9606 442160 RPL21P62 - RPL21_23_656 HGNC:36843 6 6p24.3 ribosomal protein L21 pseudogene 62 pseudo RPL21P62 ribosomal protein L21 pseudogene 62 O - 20121230 -9606 442161 LOC442161 - - - 6 6p24.3 ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 442162 RPS4XP7 - RPS4P7|RPS4X_3_659 HGNC:36885 6 6p23 ribosomal protein S4X pseudogene 7 pseudo RPS4XP7 ribosomal protein S4X pseudogene 7 O - 20121230 -9606 442164 DDX18P3 RP11-528A10.2 - HGNC:33966 6 6p22.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 3 pseudo DDX18P3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 3 O - 20121230 -9606 442167 ASS1P1 - ASSP1 HGNC:759 6 6p22.3 argininosuccinate synthetase 1 pseudogene 1 pseudo ASS1P1 argininosuccinate synthetase 1 pseudogene 1 O - 20121230 -9606 442171 RPL10P2 - RPL10_2_670|RPL10p|bA209A2.1 HGNC:13975 6 6p22.1 ribosomal protein L10 pseudogene 2 pseudo RPL10P2 ribosomal protein L10 pseudogene 2 O - 20121230 -9606 442172 LOC442172 - - - 6 6p22.1 cell division cycle associated 7 pseudogene pseudo - - - - 20121230 -9606 442175 RPLP2P1 - RPLP2_1_671|dJ408B20.3 HGNC:18724 6 6p22.1 ribosomal protein, large P2, pseudogene 1 pseudo RPLP2P1 ribosomal protein, large P2, pseudogene 1 O - 20121230 -9606 442179 OR1F12 - OR1F12P|OR1F12Q|OR6-12|hs6M1-35P HGNC:13964 6 6p21.3 olfactory receptor, family 1, subfamily F, member 12 pseudo OR1F12 olfactory receptor, family 1, subfamily F, member 12 O - 20121230 -9606 442181 RPSAP2 - LAMR1P2|RPSA_15_672|bA60E24.1 HGNC:18771 6 6p22.1 ribosomal protein SA pseudogene 2 pseudo RPSAP2 ribosomal protein SA pseudogene 2 O - 20121230 -9606 442183 OR2P1P - hs6M1-26 HGNC:8272 6 6p22.1 olfactory receptor, family 2, subfamily P, member 1 pseudogene pseudo OR2P1P olfactory receptor, family 2, subfamily P, member 1 pseudogene O - 20121230 -9606 442184 OR2B3 DAAP-334J16.3 6M1-1|OR2B3P|OR6-14|OR6-4 HGNC:8238|Ensembl:ENSG00000204703|HPRD:14938|Vega:OTTHUMG00000031226 6 6p22.1 olfactory receptor, family 2, subfamily B, member 3 protein-coding OR2B3 olfactory receptor, family 2, subfamily B, member 3 O hs6M1-1|olfactory receptor 6-4|olfactory receptor OR6-14|putative olfactory receptor 2B3 20121230 -9606 442185 OR2J1 XXbac-BPG171B11.2 6M1-4P|OR2J1P|OR6-15|OR6-5|dJ80I19.2|hs6M1-4 HGNC:8259 6 6p22.1 olfactory receptor, family 2, subfamily J, member 1 (gene/pseudogene) pseudo OR2J1 olfactory receptor, family 2, subfamily J, member 1 (gene/pseudogene) O - 20121230 -9606 442186 OR2J3 DASS-357K17.2 6M1-3|HS6M1-3|OR6-16|OR6-6|OR6.3.6|ORL671 HGNC:8261|Ensembl:ENSG00000204701|HPRD:14941|Vega:OTTHUMG00000031092 6 6p22.1 olfactory receptor, family 2, subfamily J, member 3 protein-coding OR2J3 olfactory receptor, family 2, subfamily J, member 3 O olfactory receptor 2J3|olfactory receptor 6-6|olfactory receptor OR6-16 20121230 -9606 442188 OR2J4P - OR6-20|OR6-9|dJ80I19.5|hs6M1-5 HGNC:8262 6 6p22.1 olfactory receptor, family 2, subfamily J, member 4 pseudogene pseudo OR2J4P olfactory receptor, family 2, subfamily J, member 4 pseudogene O - 20121230 -9606 442189 OR2H4P - 6M1-7P|OR2H4|OR6-21|OR6-3|dJ80I19.6|hs6M1-7 HGNC:8255 6 6p22.1 olfactory receptor, family 2, subfamily H, member 4 pseudogene pseudo OR2H4P olfactory receptor, family 2, subfamily H, member 4 pseudogene O - 20121230 -9606 442190 OR2B4P - hs6M1-22 HGNC:8239 6 6p22.1 olfactory receptor, family 2, subfamily B, member 4 pseudogene pseudo OR2B4P olfactory receptor, family 2, subfamily B, member 4 pseudogene O - 20121230 -9606 442191 OR14J1 DAMC-143C14.2 OR5U1|OR6-25|bA150A6.4|hs6M1-28 HGNC:13971|Ensembl:ENSG00000204695|HPRD:15053|Vega:OTTHUMG00000031184 6 6p22.1 olfactory receptor, family 14, subfamily J, member 1 protein-coding OR14J1 olfactory receptor, family 14, subfamily J, member 1 O olfactory receptor 14J1|olfactory receptor 5U1|olfactory receptor OR6-25|olfactory receptor, family 5, subfamily U member 1|olfactory receptor, family 5, subfamily U, member 1 20121230 -9606 442192 DDX6P1 - DDX6-Lp|DDX6P|bA150A6.3 HGNC:13948 6 6p22.1 DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene 1 pseudo DDX6P1 DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene 1 O - 20121230 -9606 442194 OR10C1 DAAP-34I1.4 OR10C1P|OR10C2|OR6-31|hs6M1-17 HGNC:8165|Ensembl:ENSG00000206474|HPRD:14886|Vega:OTTHUMG00000031207 6 6p22.1 olfactory receptor, family 10, subfamily C, member 1 protein-coding OR10C1 olfactory receptor, family 10, subfamily C, member 1 O olfactory receptor 10C1|olfactory receptor 10C2|olfactory receptor OR6-31|olfactory receptor, family 10, subfamily C, member 2|seven transmembrane helix receptor 20121230 -9606 442195 RPS17P1 XXbac-BPG13B8.8 RPS17_3_674|RPS17p|dJ994E9.1 HGNC:13982 6 6p22.1 ribosomal protein S17 pseudogene 1 pseudo RPS17P1 ribosomal protein S17 pseudogene 1 O - 20121230 -9606 442197 OR2I1P - HS6M1-14|OR2I1|OR2I2|OR2I3P|OR2I4P|OR2I5P|OR2I6|OR2I7P|OR2I8P|OR2I9P|OR6-1|OR6-34 HGNC:8258 6 6p22.1 olfactory receptor, family 2, subfamily I, member 1 pseudogene pseudo OR2I1P olfactory receptor, family 2, subfamily I, member 1 pseudogene O - 20121230 -9606 442204 MYL8P XXbac-BPG185D15.2 BING3 HGNC:7589 6 6p21.32 myosin, light chain 8, pseudogene pseudo MYL8P myosin, light chain 8, pseudogene O - 20121230 -9606 442205 KRT18P9 - bA513I15.2 HGNC:17767 6 6p21.31 keratin 18 pseudogene 9 pseudo KRT18P9 keratin 18 pseudogene 9 O - 20121230 -9606 442206 GPR166P - GPCR|PGR9 HGNC:23626 6 6p21.2 G protein-coupled receptor 166 pseudogene pseudo GPR166P G protein-coupled receptor 166 pseudogene O - 20121230 -9606 442210 LOC442210 - - - 6 6p21.2 tubulin beta chain-like pseudo - - - - 20121230 -9606 442211 ATP6V0CP3 - - HGNC:40001 6 6p21.1 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3 pseudo ATP6V0CP3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3 O - 20121230 -9606 442213 PTCHD4 RP3-402H5.2 C6orf138|dJ402H5.2 HGNC:21345|Ensembl:ENSG00000244694|HPRD:18470|Vega:OTTHUMG00000150404 6 6p12.3 patched domain containing 4 protein-coding PTCHD4 patched domain containing 4 O patched domain-containing protein 4|patched domain-containing protein C6orf138 20121230 -9606 442215 LOC442215 - - - 6 6p12.3 eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 442216 RPS17P5 RP4-753D5.2 RPS17L4|RPS17_4_700|dJ753D5.2 HGNC:21352 6 6p12.3 ribosomal protein S17 pseudogene 5 pseudo RPS17P5 ribosomal protein S17 pseudogene 5 O - 20121230 -9606 442217 RPL31P28 - RPL31_12_703 HGNC:36253 6 6p12.1 ribosomal protein L31 pseudogene 28 pseudo RPL31P28 ribosomal protein L31 pseudogene 28 O - 20121230 -9606 442218 RPL31P33 - RPL31_13_704 HGNC:36886 6 6p12.1 ribosomal protein L31 pseudogene 33 pseudo RPL31P33 ribosomal protein L31 pseudogene 33 O - 20121230 -9606 442221 RCC2P7 - - HGNC:42383 6 6p12.1 regulator of chromosome condensation 2 pseudogene 7 pseudo RCC2P7 regulator of chromosome condensation 2 pseudogene 7 O - 20121230 -9606 442225 LOC442225 RP11-184C23.1 - - 6 6q12 keratin, type II pseudogene pseudo - - - - 20121230 -9606 442227 EEF1B2P5 - - HGNC:32476 6 6q12 eukaryotic translation elongation factor 1 beta 2 pseudogene 5 pseudo EEF1B2P5 eukaryotic translation elongation factor 1 beta 2 pseudogene 5 O - 20121230 -9606 442229 SLC25A51P1 - MCART3P|bA707M13.1 HGNC:23325 6 6q12 solute carrier family 25, member 51 pseudogene 1 pseudo SLC25A51P1 solute carrier family 25, member 51 pseudogene 1 O - 20121230 -9606 442231 GAPDHP63 RP3-357D13.1 GAPDHL8|GAPDL8 HGNC:4157 6 6q14.1 glyceraldehyde 3 phosphate dehydrogenase pseudogene 63 pseudo GAPDHP63 glyceraldehyde 3 phosphate dehydrogenase pseudogene 63 O - 20121230 -9606 442232 RPL17P25 - RPL17_6_718 HGNC:36844 6 6q14.1 ribosomal protein L17 pseudogene 25 pseudo RPL17P25 ribosomal protein L17 pseudogene 25 O - 20121230 -9606 442233 SMARCE1P2 RP3-526L9.2 - HGNC:39732 6 6q14.3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 2 pseudo SMARCE1P2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 2 O - 20121230 -9606 442234 RCN1P1 - - HGNC:39205 6 6q14.3 reticulocalbin 1, EF-hand calcium binding domain pseudogene 1 pseudo RCN1P1 reticulocalbin 1, EF-hand calcium binding domain pseudogene 1 O - 20121230 -9606 442236 KRT18P50 - - HGNC:33420 6 6q16.1 keratin 18 pseudogene 50 pseudo KRT18P50 keratin 18 pseudogene 50 O - 20121230 -9606 442237 RPS7P8 - RPS7_4_725 HGNC:35710 6 6q16.1 ribosomal protein S7 pseudogene 8 pseudo RPS7P8 ribosomal protein S7 pseudogene 8 O - 20121230 -9606 442239 PRDX2P4 - - HGNC:44969 6 6q16.2 peroxiredoxin 2 pseudogene 4 pseudo PRDX2P4 peroxiredoxin 2 pseudogene 4 O - 20121230 -9606 442240 ZNF259P1 - 354J5|ZNF259P HGNC:13052 6 6q21 zinc finger protein 259 pseudogene 1 pseudo ZNF259P1 zinc finger protein 259 pseudogene 1 O - 20121230 -9606 442242 RPL7P28 - RPL7_12_736 HGNC:35899 6 6q21 ribosomal protein L7 pseudogene 28 pseudo RPL7P28 ribosomal protein L7 pseudogene 28 O - 20121230 -9606 442244 LOC442244 - - - 6 6q21 PDGFA associated protein 1 pseudogene pseudo - - - - 20121230 -9606 442245 GSTM2P1 - - HGNC:38009 6 6q21 glutathione S-transferase mu 2 (muscle) pseudogene 1 pseudo GSTM2P1 glutathione S-transferase mu 2 (muscle) pseudogene 1 O - 20121230 -9606 442247 RFPL4B - RNF211 HGNC:33264|Ensembl:ENSG00000251258|HPRD:18472|Vega:OTTHUMG00000015390 6 6q21 ret finger protein-like 4B protein-coding RFPL4B ret finger protein-like 4B O RING finger protein 211 20121230 -9606 442249 LOC442249 - - - 6 6q21 keratin 18 pseudogene pseudo - - - - 20121230 -9606 442252 KRT18P22 - - HGNC:33390 6 6q22.1 keratin 18 pseudogene 22 pseudo KRT18P22 keratin 18 pseudogene 22 O - 20121230 -9606 442253 NEPNP - NEPN|NPN HGNC:33184 6 6q22.1 nephrocan, pseudogene pseudo NEPNP nephrocan, pseudogene O - 20121230 -9606 442255 SLC25A5P7 RP11-129H15.2 ANTP7 HGNC:513 6 6q22.31 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 7 pseudo SLC25A5P7 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 7 O - 20121230 -9606 442256 PPP1R14BP5 - - HGNC:16332 6 6q22.32 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 5 pseudo PPP1R14BP5 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 5 O - 20121230 -9606 442257 RPS4XP9 - RPS4P9|RPS4X_4_749 HGNC:35792 6 6q22.32 ribosomal protein S4X pseudogene 9 pseudo RPS4XP9 ribosomal protein S4X pseudogene 9 O - 20121230 -9606 442258 EEF1DP5 - - HGNC:33524 6 6q22.33 eukaryotic translation elongation factor 1 delta pseudogene 5 pseudo EEF1DP5 eukaryotic translation elongation factor 1 delta pseudogene 5 O - 20121230 -9606 442260 RPL23AP46 - RPL23A_17_757 HGNC:35894 6 6q23.2 ribosomal protein L23a pseudogene 46 pseudo RPL23AP46 ribosomal protein L23a pseudogene 46 O - 20121230 -9606 442262 GAPDHP73 RP1-38C16.1 GAPDHL19|GAPDL19 HGNC:22956 6 6q23.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene 73 pseudo GAPDHP73 glyceraldehyde-3-phosphate dehydrogenase pseudogene 73 O - 20121230 -9606 442263 LOC442263 - - - 6 6q23.3 protein tyrosine phosphatase, non-receptor type 11 pseudogene pseudo - - - - 20121230 -9606 442266 YAP1P1 - - HGNC:38016 6 6q24.3 Yes-associated protein 1 pseudogene 1 pseudo YAP1P1 Yes-associated protein 1 pseudogene 1 O - 20121230 -9606 442267 CCT7P1 - CCT7-2P HGNC:35149 6 6q25.1 chaperonin containing TCP1, subunit 7 (eta) pseudogene 1 pseudo CCT7P1 chaperonin containing TCP1, subunit 7 (eta) pseudogene 1 O - 20121230 -9606 442270 RPS12P11 - RPS12_6_769 HGNC:36042 6 6q25.1 ribosomal protein S12 pseudogene 11 pseudo RPS12P11 ribosomal protein S12 pseudogene 11 O - 20121230 -9606 442271 LOC442271 - - - 6 6q25.2 tubulin, beta 4B class IVb pseudogene pseudo - - - - 20121230 -9606 442272 LOC442272 - - - 6 6q25.3 YKT6 v-SNARE homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 442290 NHP2P2 - TCAG_30283 HGNC:22797 7 7p15.2 NHP2 ribonucleoprotein pseudogene 2 pseudo NHP2P2 NHP2 ribonucleoprotein pseudogene 2 O - 20121230 -9606 442291 PSMC1P2 - - HGNC:39777 7 7p15.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 2 pseudo PSMC1P2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 2 O - 20121230 -9606 442292 LOC442292 - - - 7 7p15.2 coiled-coil domain containing 86 pseudogene pseudo - - - - 20121230 -9606 442293 LOC442293 hCG_1642425 - - 7 7p14.2 glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo - - - - 20121230 -9606 442304 FTLP15 - - HGNC:37965 7 7p12.3 ferritin, light polypeptide pseudogene 15 pseudo FTLP15 ferritin, light polypeptide pseudogene 15 O - 20121230 -9606 442308 LOC442308 - - - 7 7p11.2 tubulin, beta class I pseudogene pseudo - - - - 20121230 -9606 442309 LOC442309 - - - 7 7p11.2 interferon induced transmembrane protein 3 pseudogene pseudo - - - - 20121230 -9606 442317 LOC442317 - - - 7 7p11.2 chromosome 9 open reading frame 140 pseudogene pseudo - - - - 20121230 -9606 442318 LOC442318 - - - 7 7q11.21 chromosome 9 open reading frame 140 pseudogene pseudo - - - - 20121230 -9606 442319 ZNF727 - - HGNC:22785|Ensembl:ENSG00000257482 7 7q11.21 zinc finger protein 727 protein-coding ZNF727 zinc finger protein 727 O putative zinc finger protein 727 20121230 -9606 442320 LOC442320 - - - 7 7q11.21 chromosome 9 open reading frame 140 pseudogene pseudo - - - - 20121230 -9606 442325 EEF1DP4 - - HGNC:22598 7 7q11.21 eukaryotic translation elongation factor 1 delta pseudogene 4 pseudo EEF1DP4 eukaryotic translation elongation factor 1 delta pseudogene 4 O - 20121230 -9606 442326 RPL31P38 - RPL31_17_813 HGNC:36834 7 7q11.21 ribosomal protein L31 pseudogene 38 pseudo RPL31P38 ribosomal protein L31 pseudogene 38 O - 20121230 -9606 442334 ARF1P1 - ARF1 HGNC:22500 7 7q21.3 ADP-ribosylation factor 1 pseudogene 1 pseudo ARF1P1 ADP-ribosylation factor 1 pseudogene 1 O - 20121230 -9606 442338 IRS3P - IRS3L HGNC:6127 7 7q22.1 insulin receptor substrate 3, pseudogene pseudo IRS3P insulin receptor substrate 3, pseudogene O - 20121230 -9606 442361 OR2A2 - OR2A17P|OR2A2P|OR7-11|OST008 HGNC:8230|Ensembl:ENSG00000221989|HPRD:14931|Vega:OTTHUMG00000158001 7 7q35 olfactory receptor, family 2, subfamily A, member 2 protein-coding OR2A2 olfactory receptor, family 2, subfamily A, member 2 O olfactory receptor 2A17|olfactory receptor 2A2|olfactory receptor OR7-11|olfactory receptor, family 2, subfamily A, member 17 pseudogene|olfactory receptor, family 2, subfamily A, member 2 pseudogene 20121230 -9606 442382 LOC442382 - - - 8 8p21.3 ATPase, Ca++ transporting, plasma membrane 1 pseudogene pseudo - - - - 20121230 -9606 442384 VENTXP5 - - HGNC:32214 8 8p12 VENT homeobox pseudogene 5 pseudo VENTXP5 VENT homeobox pseudogene 5 O - 20121230 -9606 442388 SDR16C6P - SDR16C6 HGNC:35413 8 8q12.1 short chain dehydrogenase/reductase family 16C, member 6, pseudogene pseudo SDR16C6P short chain dehydrogenase/reductase family 16C, member 6, pseudogene O - 20121230 -9606 442389 LOC442389 - - - 8 8q12.2 interferon induced transmembrane protein pseudogene pseudo - - - - 20121230 -9606 442396 ARF1P3 - - HGNC:39884 8 8q24.13 ADP-ribosylation factor 1 pseudogene 3 pseudo ARF1P3 ADP-ribosylation factor 1 pseudogene 3 O - 20121230 -9606 442405 LOC442405 - - - 9 9p21.1 keratin 18 pseudogene pseudo - - - - 20121230 -9606 442406 KRT18P36 - - HGNC:33405 9 9p21.1 keratin 18 pseudogene 36 pseudo KRT18P36 keratin 18 pseudogene 36 O - 20121230 -9606 442415 ATP5A1P7 - - HGNC:37665 9 9p11.2 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 7 pseudo ATP5A1P7 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 7 O - 20121230 -9606 442416 ATP5A1P5 RP11-186G6.2 ATP5AL1 HGNC:825 9 9p12 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 5 pseudo ATP5A1P5 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 5 O - 20121230 -9606 442421 PTGER4P2 - PTGER4P2-CDK2AP2P2 HGNC:9598 9 9q13 prostaglandin E receptor 4 (subtype EP4) pseudogene 2 pseudo PTGER4P2 prostaglandin E receptor 4 (subtype EP4) pseudogene 2 O - 20121230 -9606 442425 FOXB2 RP11-159H20.4 bA159H20.4 HGNC:23315|Ensembl:ENSG00000204612|HPRD:18473|Vega:OTTHUMG00000020051 9 9q21.2 forkhead box B2 protein-coding FOXB2 forkhead box B2 O forkhead box protein B2 20121230 -9606 442426 RPS2P34 - RPS2_16_990 HGNC:36370 9 9q21.32 ribosomal protein S2 pseudogene 34 pseudo RPS2P34 ribosomal protein S2 pseudogene 34 O - 20121230 -9606 442427 LOC442427 - - - 9 9q21.32 putative UPF0607 protein ENSP00000332738-like pseudo - - - - 20121209 -9606 442429 EEF1DP2 - - HGNC:33523 9 9q22.31 eukaryotic translation elongation factor 1 delta pseudogene 2 pseudo EEF1DP2 eukaryotic translation elongation factor 1 delta pseudogene 2 O - 20121230 -9606 442442 RPL14P5 RP11-309M23.2 - HGNC:37720 X|Y Xp22.33;Yp11.32 ribosomal protein L14 pseudogene 5 pseudo RPL14P5 ribosomal protein L14 pseudogene 5 O - 20121102 -9606 442443 LOC442443 - - - X Xp22.31 chromodomain Y-like protein pseudogene pseudo - - - - 20121230 -9606 442444 FAM47C RP11-31H15.5 - HGNC:25301|Ensembl:ENSG00000198173|HPRD:18474|Vega:OTTHUMG00000024025 X Xp21.1 family with sequence similarity 47, member C protein-coding FAM47C family with sequence similarity 47, member C O putative protein FAM47C 20121230 -9606 442445 LOC442445 - - - X Xp21.1 ferritin, heavy polypeptide-like 17 pseudogene pseudo - - - - 20121230 -9606 442446 LOC442446 - - - X Xp11.4 upstream binding transcription factor, RNA polymerase I pseudogene pseudo - - - - 20121230 -9606 442447 LOC442447 - - - X Xp11.4 chloride intracellular channel 4 pseudogene pseudo - - - - 20121230 -9606 442454 UQCRBP1 RP11-278E11.2 - HGNC:12583 X Xp11.21 ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo UQCRBP1 ubiquinol-cytochrome c reductase binding protein pseudogene 1 O - 20121230 -9606 442455 KRT8P27 - - HGNC:33379 X Xq11.2 keratin 8 pseudogene 27 pseudo KRT8P27 keratin 8 pseudogene 27 O - 20121230 -9606 442459 LOC442459 - - - X Xq22.1 X-ray repair complementing defective repair pseudogene pseudo - - - - 20121230 -9606 442460 LOC442460 - - - X Xq22.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 442465 LOC442465 - - - X Xq26.3 sarcoma antigen 1-like pseudo - - - - 20121209 -9606 442479 HSFY3P - HSFYP2 HGNC:37119 Y Yp11.31 heat shock transcription factor, Y-linked 3, pseudogene pseudo HSFY3P heat shock transcription factor, Y-linked 3, pseudogene O - 20121230 -9606 442485 OFD1P16Y - OFD1P16|OFD1PY16|OFDYP16 HGNC:18213 Y Yq11.223 OFD1 pseudogene 16, Y-linked pseudo OFD1P16Y OFD1 pseudogene 16, Y-linked O - 20121209 -9606 442486 ZNF736P1Y - ZNF736P1|ZNF736PY1 HGNC:37726 Y Yq11.23 zinc finger protein 736 pseudogene 1, Y-linked pseudo ZNF736P1Y zinc finger protein 736 pseudogene 1, Y-linked O - 20121209 -9606 442497 LOC442497 - - - 7 7p22 uncharacterized LOC442497 miscRNA - - - - 20121230 -9606 442517 LOC442517 - - - 7 7p15.3 ATP-binding cassette, sub-family E (OABP), member 1 pseudogene pseudo - - - - 20121230 -9606 442523 DPY19L2P4 - - HGNC:22176 7 7q21.13 dpy-19-like 2 pseudogene 4 (C. elegans) pseudo DPY19L2P4 dpy-19-like 2 pseudogene 4 (C. elegans) O - 20121230 -9606 442524 DPY19L2P3 - - HGNC:22367 7 7p15.1 dpy-19-like 2 pseudogene 3 (C. elegans) pseudo DPY19L2P3 dpy-19-like 2 pseudogene 3 (C. elegans) O - 20121230 -9606 442525 SLC25A5P5 - ANTP5|TCAG_29001 HGNC:511 7 7p14.3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 5 pseudo SLC25A5P5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 5 O - 20121230 -9606 442572 LOC442572 - - - 7 7q11.21 speedy homolog E1 (Xenopus laevis) pseudogene pseudo - - - - 20121230 -9606 442578 STAG3L3 - STAG3L1|STAG3L2 HGNC:33845|HPRD:18656 7 7q11.23 stromal antigen 3-like 3 pseudo STAG3L3 stromal antigen 3-like 3 O - 20121230 -9606 442582 STAG3L2 - STAG3L1|STAG3L3 HGNC:33886 7 7q11.23 stromal antigen 3-like 2 pseudo STAG3L2 stromal antigen 3-like 2 O - 20121230 -9606 442590 SPDYE5 - - HGNC:35464 7 7q11.23 speedy homolog E5 (Xenopus laevis) protein-coding SPDYE5 speedy homolog E5 (Xenopus laevis) O putative speedy protein E5 20121230 -9606 442603 LOC442603 - - - 7 7q22.1 ADP-ribosylation factor 6 pseudogene pseudo - - - - 20121230 -9606 442659 RPL23P7 - RPL23_5_797 HGNC:36215 7 7p15.2 ribosomal protein L23 pseudogene 7 pseudo RPL23P7 ribosomal protein L23 pseudogene 7 O - 20121230 -9606 442660 RPL7AP38 - RPL7A_11_798 HGNC:36161 7 7p15.2 ribosomal protein L7a pseudogene 38 pseudo RPL7AP38 ribosomal protein L7a pseudogene 38 O - 20121230 -9606 442661 HMGB3P20 - - HGNC:39312 7 7p15.2 high mobility group box 3 pseudogene 20 pseudo HMGB3P20 high mobility group box 3 pseudogene 20 O - 20121230 -9606 442668 NECAP1P1 - - HGNC:43912 7 7p14.1 NECAP endocytosis associated 1 pseudogene 1 pseudo NECAP1P1 NECAP endocytosis associated 1 pseudogene 1 O - 20121230 -9606 442673 TUBG1P - - HGNC:12418 7 7p13 tubulin, gamma 1 pseudogene pseudo TUBG1P tubulin, gamma 1 pseudogene O - 20121230 -9606 442676 CICP8 - - HGNC:37757 7 7p11.2 capicua homolog (Drosophila) pseudogene 8 pseudo CICP8 capicua homolog (Drosophila) pseudogene 8 O - 20121230 -9606 442695 ZNF722P - ZNF722 HGNC:22571 7 - zinc finger protein 722, pseudogene protein-coding ZNF722P zinc finger protein 722, pseudogene O - 20120707 -9606 442707 LOC442707 - - - 7 7q21.11 methylene tetrahydrofolate dehydrogenase 2 pseudogene pseudo - - - - 20121230 -9606 442709 EEF1A1P28 - - HGNC:37902 7 7q21.13 eukaryotic translation elongation factor 1 alpha 1 pseudogene 28 pseudo EEF1A1P28 eukaryotic translation elongation factor 1 alpha 1 pseudogene 28 O - 20121230 -9606 442712 RPL7AP40 - RPL7A_18_822 HGNC:35883 7 7q21.3 ribosomal protein L7a pseudogene 40 pseudo RPL7AP40 ribosomal protein L7a pseudogene 40 O - 20121230 -9606 442713 LOC442713 - - - 7 7q22.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 442720 EIF3IP1 - RG208K23 HGNC:13277 7 7q31.1 eukaryotic translation initiation factor 3, subunit I pseudogene 1 pseudo EIF3IP1 eukaryotic translation initiation factor 3, subunit I pseudogene 1 O - 20121230 -9606 442721 LMOD2 tcag7.1078 C-LMOD HGNC:6648|MIM:608006|Ensembl:ENSG00000170807|Vega:OTTHUMG00000157149 7 7q31.32 leiomodin 2 (cardiac) protein-coding LMOD2 leiomodin 2 (cardiac) O cardiac leiomodin|leiomodin-2 20121230 -9606 442723 RPL27P11 - RPL27_6_845 HGNC:36533 7 7q32.3 ribosomal protein L27 pseudogene 11 pseudo RPL27P11 ribosomal protein L27 pseudogene 11 O - 20121230 -9606 442726 RPS17P12 tcag7.955 RPS17_5_854 HGNC:35930 7 7q33 ribosomal protein S17 pseudogene 12 pseudo RPS17P12 ribosomal protein S17 pseudogene 12 O - 20121230 -9606 442727 LOC442727 - - - 7 7q33 prothymosin, alpha pseudogene pseudo - - - - 20121230 -9606 442730 ST13P17 - - HGNC:38859 7 7q34 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 17 pseudo ST13P17 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 17 O - 20121230 -9606 442744 LOC442744 - - - 7 7q35 peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121209 -9606 442775 RAC1P2 - Psi2Rac1 HGNC:31414 4 4p13 ras-related C3 botulinum toxin substrate 1 pseudogene 2 pseudo RAC1P2 ras-related C3 botulinum toxin substrate 1 pseudogene 2 O - 20121230 -9606 442777 TECRP1 - - HGNC:44050 4 4q21.3 trans-2,3-enoyl-CoA reductase pseudogene 1 pseudo TECRP1 trans-2,3-enoyl-CoA reductase pseudogene 1 O - 20121230 -9606 442862 PRY2 - PTPN13LY2 HGNC:21504|MIM:400041|Ensembl:ENSG00000169807|HPRD:11851|Vega:OTTHUMG00000043586 Y Yq11.223 PTPN13-like, Y-linked 2 protein-coding PRY2 PTPN13-like, Y-linked 2 O PTPN13-like protein, Y-linked|PTPN13-like, Y-linked, centromeric|testis-specific PTP-BL-related Y protein|testis-specific PTP-BL-related protein on Y 20121220 -9606 442863 PRYP1 - PRY4P|PRYP7 HGNC:34018 Y Yq11.221 PTPN13-like, Y-linked pseudogene 1 pseudo PRYP1 PTPN13-like, Y-linked pseudogene 1 O - 20121209 -9606 442864 PRYP2 - - HGNC:34019 Y Yq11.221 PTPN13-like, Y-linked pseudogene 2 pseudo PRYP2 PTPN13-like, Y-linked pseudogene 2 O - 20121209 -9606 442865 PRYP3 - - HGNC:34020 Y Yq11.223 PTPN13-like, Y-linked pseudogene 3 pseudo PRYP3 PTPN13-like, Y-linked pseudogene 3 O - 20121209 -9606 442866 PRYP4 - - HGNC:34021 Y Yq11.223 PTPN13-like, Y-linked pseudogene 4 pseudo PRYP4 PTPN13-like, Y-linked pseudogene 4 O - 20121209 -9606 442867 BPY2B - VCY2B HGNC:25449|Ensembl:ENSG00000183795|HPRD:12530|Vega:OTTHUMG00000045101 Y Yq11.223 basic charge, Y-linked, 2B protein-coding BPY2B basic charge, Y-linked, 2B O basic charge, Y-linked 2|basic protein on Y chromosome 2|testis-specific basic protein Y 2|testis-specific basic protein on Y, 2|variable charge, Y-linked, 2|variably charged protein Y 2 20121209 -9606 442868 BPY2C - VCY2C HGNC:18225|Ensembl:ENSG00000185894|HPRD:18658|Vega:OTTHUMG00000045199 Y Yq11.223 basic charge, Y-linked, 2C protein-coding BPY2C basic charge, Y-linked, 2C O basic charge, Y-linked 2|basic protein on Y chromosome 2|testis-specific basic protein Y 2|testis-specific basic protein on Y, 2|variable charge, Y-linked, 2|variably charged protein Y 2 20121209 -9606 442890 MIR133B - MIRN133B|miRNA133B|mir-133b HGNC:31759|MIM:610946|miRBase:MI0000822 6 6p12.2 microRNA 133b miscRNA MIR133B microRNA 133b O - 20121230 -9606 442891 MIR135B - MIRN135B HGNC:31760|miRBase:MI0000810 1 1q32.1 microRNA 135b miscRNA MIR135B microRNA 135b O - 20121230 -9606 442892 MIR148B - MIRN148B|mir-148b HGNC:31761|MIM:613787|miRBase:MI0000811 12 12q13.13 microRNA 148b miscRNA MIR148B microRNA 148b O - 20121230 -9606 442893 MIR151A - MIR151|MIRN151|hsa-mir-151|hsa-mir-151a HGNC:31762|miRBase:MI0000809 8 - microRNA 151a miscRNA MIR151A microRNA 151a O - 20121230 -9606 442894 MIR302B - MIRN302B HGNC:31763|MIM:614597|miRBase:MI0000772 4 4q25 microRNA 302b miscRNA MIR302B microRNA 302b O - 20121230 -9606 442895 MIR302C - MIRN302C HGNC:31764|MIM:614598|miRBase:MI0000773 4 4q25 microRNA 302c miscRNA MIR302C microRNA 302c O - 20121230 -9606 442896 MIR302D - MIRN302D HGNC:31765|MIM:614599|miRBase:MI0000774 4 4q25 microRNA 302d miscRNA MIR302D microRNA 302d O - 20121230 -9606 442897 MIR323A - MIR323|MIRN323|hsa-mir-323|hsa-mir-323a HGNC:31766|miRBase:MI0000807 14 14q32.31 microRNA 323a miscRNA MIR323A microRNA 323a O - 20121230 -9606 442898 MIR324 - MIRN324|hsa-mir-324 HGNC:31767|miRBase:MI0000813 17 17p13.1 microRNA 324 miscRNA MIR324 microRNA 324 O - 20121230 -9606 442899 MIR325 - MIRN325|hsa-mir-325 HGNC:31768|miRBase:MI0000824 X Xq21.1 microRNA 325 miscRNA MIR325 microRNA 325 O - 20121230 -9606 442900 MIR326 - MIRN326|hsa-mir-326 HGNC:31769|MIM:613755|miRBase:MI0000808 11 11q13.4 microRNA 326 miscRNA MIR326 microRNA 326 O - 20121230 -9606 442901 MIR328 - MIRN328|hsa-mir-328 HGNC:31770|MIM:613701|miRBase:MI0000804 16 16q22.1 microRNA 328 miscRNA MIR328 microRNA 328 O - 20121230 -9606 442902 MIR330 - MIRN330|hsa-mir-330 HGNC:31771|miRBase:MI0000803 19 19q13.32 microRNA 330 miscRNA MIR330 microRNA 330 O - 20121230 -9606 442903 MIR331 - MIRN331|hsa-mir-331 HGNC:31772|miRBase:MI0000812 12 12q22 microRNA 331 miscRNA MIR331 microRNA 331 O - 20121230 -9606 442904 MIR335 - MIRN335|hsa-mir-335|miRNA335 HGNC:31773|MIM:611768|miRBase:MI0000816 7 7q32.2 microRNA 335 miscRNA MIR335 microRNA 335 O - 20121230 -9606 442905 MIR337 - MIRN337|hsa-mir-337 HGNC:31774|miRBase:MI0000806 14 14q32.2 microRNA 337 miscRNA MIR337 microRNA 337 O - 20121230 -9606 442906 MIR338 - MIRN338|hsa-mir-338 HGNC:31775|MIM:614059|miRBase:MI0000814 17 17q25.3 microRNA 338 miscRNA MIR338 microRNA 338 O - 20121230 -9606 442907 MIR339 - MIRN339|hsa-mir-339 HGNC:31776|miRBase:MI0000815 7 7p22.3 microRNA 339 miscRNA MIR339 microRNA 339 O - 20121230 -9606 442908 MIR340 - MIRN340|hsa-mir-340 HGNC:31777|miRBase:MI0000802 5 5q35.3 microRNA 340 miscRNA MIR340 microRNA 340 O - 20121230 -9606 442909 MIR342 - MIRN342|hsa-mir-342 HGNC:31778|miRBase:MI0000805 14 14q32.2 microRNA 342 miscRNA MIR342 microRNA 342 O - 20121230 -9606 442910 MIR345 - MIRN345|hsa-mir-345 HGNC:31779|miRBase:MI0000825 14 14q32.2 microRNA 345 miscRNA MIR345 microRNA 345 O - 20121230 -9606 442911 MIR346 - MIRN346|hsa-mir-346|miR-346|miRNA346 HGNC:31780|MIM:611190|miRBase:MI0000826 10 10q23.2 microRNA 346 miscRNA MIR346 microRNA 346 O - 20121230 -9606 442912 MIR367 - MIRN367|hsa-mir-367 HGNC:31781|MIM:614600|miRBase:MI0000775 4 4q25 microRNA 367 miscRNA MIR367 microRNA 367 O - 20121230 -9606 442913 MIR376C - MIR368|MIRN368|MIRN376C|hsa-mir-368|miRNA368 HGNC:31782|MIM:610983|miRBase:MI0000776 14 14q32.31 microRNA 376c miscRNA MIR376C microRNA 376c O - 20121230 -9606 442914 MIR369 - MIR369-3|MIRN369|MIRN369-3|hsa-mir-369 HGNC:31783|MIM:611794|miRBase:MI0000777 14 14q32.31 microRNA 369 miscRNA MIR369 microRNA 369 O - 20121230 -9606 442915 MIR370 - MIRN370|hsa-mir-370 HGNC:31784|MIM:612553|miRBase:MI0000778 14 14q32.2 microRNA 370 miscRNA MIR370 microRNA 370 O - 20121230 -9606 442916 MIR371A - MIR371|MIRN371|hsa-mir-371|hsa-mir-371a HGNC:31785|MIM:612043|miRBase:MI0000779 19 19q13.42 microRNA 371a miscRNA MIR371A microRNA 371a O - 20121230 -9606 442917 MIR372 - MIRN372|hsa-mir-372 HGNC:31786|MIM:612044|miRBase:MI0000780 19 19q13.42 microRNA 372 miscRNA MIR372 microRNA 372 O - 20121230 -9606 442918 MIR373 - MIRN373|hsa-mir-373|miRNA373 HGNC:31787|MIM:611954|miRBase:MI0000781 19 19q13.42 microRNA 373 miscRNA MIR373 microRNA 373 O - 20121230 -9606 442919 MIR374A - MIRN374|MIRN374A|hsa-mir-374 HGNC:31788|miRBase:MI0000782 X Xq13.2 microRNA 374a miscRNA MIR374A microRNA 374a O - 20121230 -9606 442920 MIR196B - MIRN196B|miR-196b|miRNA196B HGNC:31790|MIM:609688|miRBase:MI0001150 7 7p15.2 microRNA 196b miscRNA MIR196B microRNA 196b O - 20121230 -9606 444882 IGFL4 - - HGNC:32931|MIM:610547|Ensembl:ENSG00000204869|HPRD:13730 19 19q13.32 IGF-like family member 4 protein-coding IGFL4 IGF-like family member 4 O insulin growth factor-like family member 4 20121230 -9606 444980 HYT4 - - MIM:608742 12 12p12.2-p12.1 Hypertension, essential, susceptibility to, 4 unknown - - - - 20120622 -9606 445328 ARHGEF35 - ARHGEF5L|CTAGE4 HGNC:33846|Ensembl:ENSG00000213214|HPRD:13476|Vega:OTTHUMG00000158010 7 7q35 Rho guanine nucleotide exchange factor (GEF) 35 protein-coding ARHGEF35 Rho guanine nucleotide exchange factor (GEF) 35 O rho guanine nucleotide exchange factor 35|rho guanine nucleotide exchange factor 5-like protein 20121230 -9606 445329 SULT1A4 - HAST3|M-PST|ST1A3/ST1A4|TL-PST HGNC:30004|Ensembl:ENSG00000213648|HPRD:18659|Vega:OTTHUMG00000170468 16 - sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 protein-coding SULT1A4 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 O aryl sulfotransferase 1A3/1A4|catecholamine-sulfating phenol sulfotransferase|monoamine-sulfating phenol sulfotransferase|placental estrogen sulfotransferase|sulfokinase|sulfotransferase 1A3/1A4|sulfotransferase, monoamine-preferring|thermolabile phenol sulfotransferase 20121230 -9606 445341 TNAP - - - 13 - TRAFs and NIK-associated protein unknown - - - - 20121209 -9606 445347 TARP - CD3G|TCRG|TCRGC1|TCRGC2 MIM:609642|HPRD:15468 7 7p15-p14 TCR gamma alternate reading frame protein protein-coding - - - T-cell receptor gamma-chain constant region 20121230 -9606 445372 TRIM6-TRIM34 - IFP1|RNF21|TRIM34 HGNC:33440|Ensembl:ENSG00000258588|Ensembl:ENSG00000258659|HPRD:18660|Vega:OTTHUMG00000066899 11 11p15 TRIM6-TRIM34 readthrough protein-coding TRIM6-TRIM34 TRIM6-TRIM34 readthrough O interferon-responsive finger protein 1 long form|tripartite motif-containing 6 and tripartite motif-containing 34 20121230 -9606 445571 CBWD3 RP11-561O23.4 bA561O23.1 HGNC:18519|MIM:611080|Ensembl:ENSG00000196873|Vega:OTTHUMG00000019958 9 9q13 COBW domain containing 3 protein-coding CBWD3 COBW domain containing 3 O COBW domain-containing protein 3|cobalamin synthase W domain-containing protein 3|cobalamin synthetase W domain-containing protein 3 20121230 -9606 445573 ATP5J2P3 - bA159H20.5 HGNC:21286 9 9q21.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 3 pseudo ATP5J2P3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 3 O - 20121230 -9606 445577 C9orf129 RP11-165J3.3 bA165J3.3 HGNC:31116|Ensembl:ENSG00000204352|Vega:OTTHUMG00000020248 9 9q22.31 chromosome 9 open reading frame 129 protein-coding C9orf129 chromosome 9 open reading frame 129 O putative uncharacterized protein C9orf129 20121230 -9606 445582 POTEE - A26C1|A26C1A|CT104.2|POTE-2|POTE2|POTE2gamma HGNC:33895|MIM:608914|Ensembl:ENSG00000188219|HPRD:12329 2 2q21.1 POTE ankyrin domain family, member E protein-coding POTEE POTE ankyrin domain family, member E O ANKRD26-like family C member 1A|ANKRD26-like family C, member 1A|POTE ankyrin domain family member E|cancer/testis antigen family 104, member 2|prostate, ovary, testis-expressed protein on chromosome 2|protein expressed in prostate, ovary, testis, and placenta 2 20121230 -9606 445815 PALM2-AKAP2 hCG_28765 AKAP2 HGNC:33529|Ensembl:ENSG00000157654|Ensembl:ENSG00000241978|HPRD:09197|HPRD:18661|Vega:OTTHUMG00000156812 9 9q31.3 PALM2-AKAP2 readthrough protein-coding PALM2-AKAP2 PALM2-AKAP2 readthrough O PALM2-AKAP2 protein|PALM2-AKAP2 readthrough transcript 20121230 -9606 446207 ACTBP10 - - HGNC:31819 14 14q11.2 actin, beta pseudogene 10 pseudo ACTBP10 actin, beta pseudogene 10 O - 20121209 -9606 446209 RPS26P9 - RPS26_25_1338 HGNC:31821 14 14q11.1 ribosomal protein S26 pseudogene 9 pseudo RPS26P9 ribosomal protein S26 pseudogene 9 O - 20121230 -9606 448831 FRG2 - FRG2A HGNC:19136|MIM:609032|Ensembl:ENSG00000205097|HPRD:16418|Vega:OTTHUMG00000160339 4 4q35 FSHD region gene 2 protein-coding FRG2 FSHD region gene 2 O FSHD region gene 2 protein|protein FRG2 20121230 -9606 448834 KPRP - C1orf45 HGNC:31823|MIM:613260|Ensembl:ENSG00000203786|Vega:OTTHUMG00000012402 1 1q21.3 keratinocyte proline-rich protein protein-coding KPRP keratinocyte proline-rich protein O hKPRP|keratinocyte expressed, proline-rich protein 20121230 -9606 448835 LCE6A - C1orf44 HGNC:31824|Ensembl:ENSG00000235942|Vega:OTTHUMG00000012448 1 1q21.3 late cornified envelope 6A protein-coding LCE6A late cornified envelope 6A O late cornified envelope protein 6A 20121230 -9606 448962 DFNA54 - - HGNC:23566 5 5q31 deafness, autosomal dominant 54 unknown DFNA54 deafness, autosomal dominant 54 O - 20110215 -9606 448963 DFNB51 - - HGNC:24367|MIM:609941 11 11p13-p12 deafness, autosomal recessive 51 unknown DFNB51 deafness, autosomal recessive 51 O - 20120622 -9606 448990 TAS2R6 - PS3|T2R06|T2R6 HGNC:20616 7 7q34 taste receptor, type 2, member 6 pseudo TAS2R6 taste receptor, type 2, member 6 O - 20121230 -9606 448991 TAS2R67P - PS5 HGNC:43898 12 12p13.2 taste receptor, type 2, member 67 pseudogene pseudo TAS2R67P taste receptor, type 2, member 67 pseudogene O - 20121230 -9606 449013 ANIB2 - AIB2 HGNC:31941|MIM:608542 19 19q13 aneurysm, intracranial berry 2 unknown ANIB2 aneurysm, intracranial berry 2 O - 20120622 -9606 449015 ASPG3 - - MIM:608781 1 1q21-q22 Asperger syndrome, susceptibility to, 3 unknown - - - - 20120622 -9606 449016 BMIQ5 - - HGNC:31117|MIM:608558 16 16p13 body mass index QTL 5 unknown BMIQ5 body mass index QTL 5 O - 20120622 -9606 449017 BMIQ6 - - HGNC:22120|MIM:608559 20 20pter-p11.2 body mass index QTL 6 unknown BMIQ6 body mass index QTL 6 O - 20120622 -9606 449018 EJM3 - - MIM:608816 6 6p21 Epilepsy, juvenile myoclonic 3 unknown - - - - 20120622 -9606 449481 DFNB43 - - HGNC:17480 15 15q24.1-q25.2 deafness, autosomal recessive 43 unknown DFNB43 deafness, autosomal recessive 43 O - 20110215 -9606 449483 DFNB45 - - HGNC:22400|MIM:612433 1 1q43-q44 deafness, autosomal recessive 45 unknown DFNB45 deafness, autosomal recessive 45 O - 20120622 -9606 449484 DFNB44 - - HGNC:23223|MIM:610154 7 7p14.1-q11.22 deafness, autosomal recessive 44 unknown DFNB44 deafness, autosomal recessive 44 O - 20120622 -9606 449488 DFNB46 - - HGNC:31085|MIM:609647 18 18p11.32-p11.31 deafness, autosomal recessive 46 unknown DFNB46 deafness, autosomal recessive 46 O - 20120622 -9606 449489 DFNB47 - - HGNC:31086|MIM:609946 2 2p25.1-p24.3 deafness, autosomal recessive 47 unknown DFNB47 deafness, autosomal recessive 47 O - 20120622 -9606 449491 DEFA8P - DEFAP1 HGNC:31799 8 8p23.1 defensin, alpha 8 pseudogene pseudo DEFA8P defensin, alpha 8 pseudogene O - 20121230 -9606 449492 DEFA9P - DEFAP2 HGNC:31800 8 8p23.1 defensin, alpha 9 pseudogene pseudo DEFA9P defensin, alpha 9 pseudogene O - 20121230 -9606 449493 DEFA10P - - HGNC:31801 8 8p23.1 defensin, alpha 10 pseudogene pseudo DEFA10P defensin, alpha 10 pseudogene O - 20121230 -9606 449518 P2RY10P2 - - HGNC:32924 X Xq21.1 purinergic receptor P2Y, G-protein coupled, 10 pseudogene 2 pseudo P2RY10P2 purinergic receptor P2Y, G-protein coupled, 10 pseudogene 2 O - 20121230 -9606 449519 LOC449519 - - - 11 - Mas-related gene LOC449519 protein-coding - - - - 20100404 -9606 449520 GGNBP1 - - HGNC:19427|MIM:609495 6 6p21 gametogenetin binding protein 1 (pseudogene) pseudo GGNBP1 gametogenetin binding protein 1 (pseudogene) O - 20121230 -9606 449523 JST - - - - - tumor suppressor gene JST protein-coding - - - - 20100404 -9606 449619 ERVK-7 - ERVK7|HERV-K(III)|HERV-K102|HERV-KIII HGNC:31828|MIM:614013 1 1q22 endogenous retrovirus group K, member 7 unknown ERVK-7 endogenous retrovirus group K, member 7 O - 20121017 -9606 449645 SF3A3P2 - - HGNC:23277 11 11q24.1 splicing factor 3a, subunit 3 pseudogene 2 pseudo SF3A3P2 splicing factor 3a, subunit 3 pseudogene 2 O - 20121230 -9606 450086 AD9 - - MIM:608907 19 19p13.2 Alzheimer disease 9 unknown - - - - 20121018 -9606 450087 ADHD1 - - MIM:608903 16 16p13 Attention deficit-hyperactivity disorder, susceptibility to, 1 unknown - - - - 20120622 -9606 450088 ADHD2 - - MIM:608904 17 17p11 Attention deficit-hyperactivity disorder, susceptibility to, 2 unknown - - - - 20120622 -9606 450089 ADHD3 - LOAS MIM:608905 6 6q12 Attention deficit-hyperactivity disorder, susceptibility to, 2 unknown - - - - 20120622 -9606 450090 ADHD4 - - MIM:608906 5 5p13 Attention deficit-hyperactivity disorder, susceptibility to, 4 unknown - - - - 20120622 -9606 450092 KTCN2 - - MIM:608932 16 16q22.3-q23.1 Keratoconus 2 unknown - - - - 20120622 -9606 450093 LNCR1 - - MIM:608935 6 6q23-q25 Lung cancer 1 unknown - - - - 20120622 -9606 450094 MYP6 - - HGNC:35434|MIM:608908 22 22q12 myopia 6 unknown MYP6 myopia 6 O - 20120622 -9606 450095 PLF - - MIM:608852 6 6q21-q22 Pulmonary function unknown - - - - 20120622 -9606 450096 PAPA4 - - MIM:608562 7 7q22 Polydactyly, postaxial, type A4 unknown - - - - 20120622 -9606 450097 RLS2 - - MIM:608831 14 14q13-q21 Restless legs syndrome 2 unknown - - - - 20120622 -9606 450208 LCEP1 RP1-43O17.2 - HGNC:31806 1 1q21.3 late cornified envelope pseudogene 1 pseudo LCEP1 late cornified envelope pseudogene 1 O - 20121230 -9606 450209 LCEP2 RP1-43O17.1 - HGNC:31807 1 1q21.3 late cornified envelope pseudogene 2 pseudo LCEP2 late cornified envelope pseudogene 2 O - 20121230 -9606 450210 LCEP4 RP1-52J10.9 - HGNC:31808 1 1q21.3 late cornified envelope pseudogene 4 pseudo LCEP4 late cornified envelope pseudogene 4 O - 20121230 -9606 450211 LCEP3 RP1-52J10.1 - HGNC:31809 1 1q22 late cornified envelope pseudogene 3 pseudo LCEP3 late cornified envelope pseudogene 3 O - 20121230 -9606 450232 PHF5CP - PHF5AP1 HGNC:32385 19 19p12 PHD finger protein 5C pseudogene pseudo PHF5CP PHD finger protein 5C pseudogene O - 20121230 -9606 450234 PHF5GP - - HGNC:23269 2 2q24.3 PHD finger protein 5G pseudogene pseudo PHF5GP PHD finger protein 5G pseudogene O - 20121230 -9606 450238 PHF5DP - - HGNC:23268 3 3q13.2 PHD finger protein 5D pseudogene pseudo PHF5DP PHD finger protein 5D pseudogene O - 20121230 -9606 450239 PHF5EP - - HGNC:23267 3 3p21.31 PHD finger protein 5E pseudogene pseudo PHF5EP PHD finger protein 5E pseudogene O - 20121230 -9606 450246 PHF5FP - - HGNC:23266 X Xq23 PHD finger protein 5F pseudogene pseudo PHF5FP PHD finger protein 5F pseudogene O - 20121230 -9606 450250 PHF5HP - - HGNC:23264 15 15q26.3 PHD finger protein 5H pseudogene pseudo PHF5HP PHD finger protein 5H pseudogene O - 20121230 -9606 474148 TTTY3B - LNCRNA00122|NCRNA00122 HGNC:31888 Y Yq11.223 testis-specific transcript, Y-linked 3B (non-protein coding) miscRNA TTTY3B testis-specific transcript, Y-linked 3B (non-protein coding) O - 20121230 -9606 474149 TTTY4B - LINC00124|NCRNA00124 HGNC:31891 Y Yq11.223 testis-specific transcript, Y-linked 4B (non-protein coding) miscRNA TTTY4B testis-specific transcript, Y-linked 4B (non-protein coding) O - 20121209 -9606 474150 TTTY4C - LINC00125|NCRNA00125 HGNC:31892 Y Yq11.223 testis-specific transcript, Y-linked 4C (non-protein coding) miscRNA TTTY4C testis-specific transcript, Y-linked 4C (non-protein coding) O - 20121209 -9606 474151 TTTY17B - NCRNA00141 HGNC:31889 Y Yq11.223 testis-specific transcript, Y-linked 17B (non-protein coding) miscRNA TTTY17B testis-specific transcript, Y-linked 17B (non-protein coding) O - 20121230 -9606 474152 TTTY17C - NCRNA00142 HGNC:31890 Y Yq11.223 testis-specific transcript, Y-linked 17C (non-protein coding) miscRNA TTTY17C testis-specific transcript, Y-linked 17C (non-protein coding) O - 20121209 -9606 474159 DYX9 - DXY9 HGNC:16755|MIM:300509 X Xq27.3 dyslexia susceptibility 9 unknown DYX9 dyslexia susceptibility 9 O - 20120622 -9606 474167 HDGFP1 - HDGFP HGNC:31836 X Xq25 hepatoma-derived growth factor pseudogene 1 pseudo HDGFP1 hepatoma-derived growth factor pseudogene 1 O - 20121230 -9606 474168 WG - - MIM:608710 6 6p21.3 Wegener granulomatosis unknown - - - - 20121209 -9606 474170 LRRC37A2 - - HGNC:32404|Ensembl:ENSG00000238083|HPRD:14227|Vega:OTTHUMG00000178032 17 17q21.31 leucine rich repeat containing 37, member A2 protein-coding LRRC37A2 leucine rich repeat containing 37, member A2 O c114 SLIT-like testicular protein|leucine-rich repeat-containing protein 37A2 20121230 -9606 474171 STGC3 - - HPRD:15444 3 3p21 uncharacterized STGC3 unknown - - - - 20121230 -9606 474174 SGCEP - - - 2 2q22.3 sarcoglycan, epsilon, pseudogene pseudo - - - - 20121230 -9606 474185 OA29 - - RGD:1298425 2 - Osteoarthritis QTL 29 unknown - - - - 20120809 -9606 474186 OA30 - - RGD:1298474 2 - Osteoarthritis QTL 29 unknown - - - - 20120809 -9606 474187 BP35 - - RGD:1298421 17 - Blood pressure QTL 35 unknown - - - - 20120809 -9606 474188 OA24 - - RGD:1298410 4 - Osteoarthritis QTL 24 unknown - - - - 20120809 -9606 474189 BP24 - - RGD:1298415 3 - Blood pressure QTL 24 unknown - - - - 20120809 -9606 474190 BP30 - - RGD:1298439 3 - Blood pressure QTL 30 unknown - - - - 20120809 -9606 474191 BP31 - - RGD:1298492 11 - Blood pressure QTL 31 unknown - - - - 20120809 -9606 474192 BP32 - - RGD:1298444 15 - Blood pressure QTL 32 unknown - - - - 20120809 -9606 474193 BP33 - - RGD:1298498 16 - Blood pressure QTL 33 unknown - - - - 20120809 -9606 474194 BP34 - - RGD:1298468 17 - Blood pressure QTL 34 unknown - - - - 20120809 -9606 474195 OA16 - - RGD:1298452 6 - Osteoarthritis QTL 16 unknown - - - - 20120809 -9606 474196 OA25 - - RGD:1298404 2 - Osteoarthritis QTL 25 unknown - - - - 20120809 -9606 474197 BP22 - - RGD:1298513 11 - Blood pressure QTL 22 unknown - - - - 20120809 -9606 474198 BP23 - - RGD:1298429 2 - Blood pressure QTL 23 unknown - - - - 20120809 -9606 474199 BP9 - - RGD:1298463 1 - Blood pressure QTL 9 unknown - - - - 20120809 -9606 474200 BW22 - - RGD:1300009 10 - Body weight QTL 22 unknown - - - - 20120809 -9606 474201 BP45 - - RGD:1300021 1 - Blood pressure QTL 45 unknown - - - - 20120809 -9606 474202 BP46 - - RGD:1300023 2 - Blood pressure QTL 46 unknown - - - - 20120809 -9606 474203 BP47 - - RGD:1300004 5 - Blood pressure QTL 47 unknown - - - - 20120809 -9606 474204 BP48 - - RGD:1300014 7 - Blood pressure QTL 48 unknown - - - - 20120809 -9606 474205 BP49 - - RGD:1300005 8 - Blood pressure QTL 49 unknown - - - - 20120809 -9606 474206 BP51 - - RGD:1300015 3 - Blood pressure QTL 51 unknown - - - - 20120809 -9606 474207 BP50 - - RGD:1300034 19 - Blood pressure QTL 50 unknown - - - - 20120809 -9606 474208 BP52 - - RGD:1300012 10 - Blood pressure QTL 52 unknown - - - - 20120809 -9606 474209 BP53 - - RGD:1300028 12 - Blood pressure QTL 53 unknown - - - - 20120809 -9606 474210 BP54 - - RGD:1300000 14 - Blood pressure QTL 54 unknown - - - - 20120809 -9606 474211 BP55 - - RGD:1300031 22 - Blood pressure QTL 55 unknown - - - - 20120809 -9606 474212 BP17 - - RGD:1298433 1 - Blood pressure QTL 17 unknown - - - - 20120809 -9606 474213 BP18 - - RGD:1298464 1 - Blood pressure QTL 18 unknown - - - - 20120809 -9606 474214 BP19 - - RGD:1298459 8 - Blood pressure QTL 19 unknown - - - - 20120809 -9606 474215 BP21 - - RGD:1298472 5 - Blood pressure QTL 21 unknown - - - - 20120809 -9606 474216 BP20 - - RGD:1298461 17 - Blood pressure QTL 20 unknown - - - - 20120809 -9606 474217 BP36 - - RGD:1300026 3 - Blood pressure QTL 36 unknown - - - - 20120809 -9606 474218 BP37 - - RGD:1300013 2 - Blood pressure QTL 37 unknown - - - - 20120809 -9606 474219 BP39 - - RGD:1300025 X - Blood pressure QTL 39 unknown - - - - 20120809 -9606 474220 BP38 - - RGD:1300033 22 - Blood pressure QTL 38 unknown - - - - 20120809 -9606 474221 RA1 - - RGD:1298412 1 - Rheumatoid arthritis QTL 01 unknown - - - - 20121209 -9606 474222 RA2 - - RGD:1298441 1 - Rheumatoid arthritis QTL 01 unknown - - - - 20120809 -9606 474223 RA3 - - RGD:1298511 3 - Rheumatoid arthritis QTL 02 unknown - - - - 20120809 -9606 474224 RA4 - - RGD:1298489 3 - Rheumatoid arthritis QTL 04 unknown - - - - 20120809 -9606 474225 RA5 - - RGD:1298479 3 - Rheumatoid arthritis QTL 01 unknown - - - - 20120809 -9606 474226 RA6 - - RGD:1298475 3 - Rheumatoid arthritis QTL 06 unknown - - - - 20120809 -9606 474227 RA7 - - RGD:1298442 4 - Rheumatoid arthritis QTL 07 unknown - - - - 20120809 -9606 474228 RA8 - - RGD:1298450 5 - Rheumatoid arthritis QTL 08 unknown - - - - 20120809 -9606 474229 RA9 - - RGD:1298427 5 - Rheumatoid arthritis QTL 09 unknown - - - - 20121209 -9606 474230 RA10 - - RGD:1298508 5 - Rheumatoid arthritis QTL 10 unknown - - - - 20120809 -9606 474231 RA11 - - RGD:1298431 6 - Rheumatoid arthritis QTL 11 unknown - - - - 20120809 -9606 474232 RA12 - - RGD:1298473 6 - Rheumatoid arthritis QTL 12 unknown - - - - 20120809 -9606 474233 RA13 - - RGD:1298514 6 - Rheumatoid arthritis QTL 13 unknown - - - - 20120809 -9606 474234 RA14 - - RGD:1298422 8 - Rheumatoid arthritis QTL 14 unknown - - - - 20120809 -9606 474235 RA15 - - RGD:1298506 8 - Rheumatoid arthritis QTL 15 unknown - - - - 20120809 -9606 474236 RA16 - - RGD:1298484 8 - Rheumatoid arthritis QTL 16 unknown - - - - 20120809 -9606 474237 RA17 - - RGD:1298447 9 - Rheumatoid arthritis QTL 17 unknown - - - - 20120809 -9606 474238 RA31 - - RGD:1298493 X - Rheumatoid arthritis QTL 31 unknown - - - - 20120809 -9606 474239 RA18 - - RGD:1298457 10 - Rheumatoid arthritis QTL 18 unknown - - - - 20120809 -9606 474240 RA19 - - RGD:1298500 11 - Rheumatoid arthritis QTL 19 unknown - - - - 20120809 -9606 474241 RA20 - - RGD:1298480 12 - Rheumatoid arthritis QTL 20 unknown - - - - 20120809 -9606 474242 RA21 - - RGD:1298509 12 - Rheumatoid arthritis QTL 21 unknown - - - - 20120809 -9606 474243 RA22 - - RGD:1298466 12 - Rheumatoid arthritis QTL 22 unknown - - - - 20120809 -9606 474244 RA23 - - RGD:1298469 14 - Rheumatoid arthritis QTL 23 unknown - - - - 20120809 -9606 474245 RA24 - - RGD:1298485 14 - Rheumatoid arthritis QTL 24 unknown - - - - 20120809 -9606 474246 RA25 - - RGD:1298501 16 - Rheumatoid arthritis QTL 25 unknown - - - - 20120809 -9606 474247 RA26 - - RGD:1298488 16 - Rheumatoid arthritis QTL 26 unknown - - - - 20120809 -9606 474248 RA27 - - RGD:1298430 17 - Rheumatoid arthritis QTL 27 unknown - - - - 20120809 -9606 474249 RA28 - - RGD:1298510 17 - Rheumatoid arthritis QTL 28 unknown - - - - 20120809 -9606 474250 RA29 - - RGD:1298512 17 - Rheumatoid arthritis QTL 29 unknown - - - - 20120809 -9606 474251 RA30 - - RGD:1298455 18 - Rheumatoid arthritis QTL 30 unknown - - - - 20120809 -9606 474252 BP10 - - RGD:1298483 2 - Blood pressure QTL 10 unknown - - - - 20120809 -9606 474253 BP11 - - RGD:1298453 8 - Blood pressure QTL 11 unknown - - - - 20120809 -9606 474254 BP12 - - RGD:1298478 21 - Blood pressure QTL 12 unknown - - - - 20120809 -9606 474255 BP13 - - RGD:1298409 18 - Blood pressure QTL 13 unknown - - - - 20120809 -9606 474256 BP1 - - RGD:1298434 4 - Blood pressure QTL 1 unknown - - - - 20120809 -9606 474257 BP2 - - RGD:1298482 8 - Blood pressure QTL 2 unknown - - - - 20120809 -9606 474258 BP4 - - RGD:1298438 6 - Blood pressure QTL 4 unknown - - - - 20120809 -9606 474259 BP3 - - RGD:1298476 19 - Blood pressure QTL 3 unknown - - - - 20120809 -9606 474260 BP14 - - RGD:1298465 17 - Blood pressure QTL 14 unknown - - - - 20120809 -9606 474261 BP15 - - RGD:1298443 17 - Blood pressure QTL 15 unknown - - - - 20120809 -9606 474262 BP16 - - RGD:1298406 17 - Blood pressure QTL 16 unknown - - - - 20120809 -9606 474263 BW8 - - RGD:1298507 5 - Body weight QTL 8 unknown - - - - 20120809 -9606 474264 BW9 - - RGD:1298458 6 - Body weight QTL 9 unknown - - - - 20120809 -9606 474265 BW10 - - RGD:1298497 3 - Body weight QTL 10 unknown - - - - 20120809 -9606 474266 BP25 - - RGD:1300019 1 - Blood pressure QTL 25 unknown - - - - 20120809 -9606 474267 BP26 - - RGD:1300001 4 - Blood pressure QTL 26 unknown - - - - 20120809 -9606 474268 BP28 - - RGD:1300008 X - Blood pressure QTL 28 unknown - - - - 20120809 -9606 474269 BP27 - - RGD:1300010 16 - Blood pressure QTL 27 unknown - - - - 20120809 -9606 474270 BW2 - - RGD:1298470 2 - Body weight QTL 2 unknown - - - - 20120809 -9606 474271 BW3 - - RGD:1298486 1 - Body weight QTL 3 unknown - - - - 20120809 -9606 474272 BW4 - - RGD:1298446 4 - Body weight QTL 4 unknown - - - - 20120809 -9606 474273 BW5 - - RGD:1298505 6 - Body weight QTL 5 unknown - - - - 20120809 -9606 474274 BW7 - - RGD:1298445 8 - Body weight QTL 7 unknown - - - - 20120809 -9606 474275 BW6 - - RGD:1298456 20 - Body weight QTL 6 unknown - - - - 20120809 -9606 474276 BW23 - - RGD:1300030 3 - Body weight QTL 23 unknown - - - - 20120809 -9606 474277 BW24 - - RGD:1300011 3 - Body weight QTL 24 unknown - - - - 20120809 -9606 474278 BW25 - - RGD:1300024 7 - Body weight QTL 25 unknown - - - - 20120809 -9606 474279 BW26 - - RGD:1299999 7 - Body weight QTL 26 unknown - - - - 20120809 -9606 474280 BW27 - - RGD:1300022 7 - Body weight QTL 27 unknown - - - - 20120809 -9606 474281 BW28 - - RGD:1300002 14 - Body weight QTL 28 unknown - - - - 20120809 -9606 474282 BW29 - - RGD:1300036 16 - Body weight QTL 29 unknown - - - - 20120809 -9606 474283 BW30 - - RGD:1300035 17 - Body weight QTL 30 unknown - - - - 20120809 -9606 474284 BW31 - - RGD:1300020 17 - Body weight QTL 31 unknown - - - - 20120809 -9606 474285 OA1 - - RGD:1298477 1 - Osteoarthritis QTL 1 unknown - - - - 20120809 -9606 474286 OA2 - - RGD:1298481 2 - Osteoarthritis QTL 2 unknown - - - - 20120809 -9606 474287 OSTEAR3_H - OA3_H RGD:1298502 7 - Osteoarthritis QTL 3 unknown - - - - 20120809 -9606 474288 OA4 - - RGD:1298471 9 - Osteoarthritis QTL 4 unknown - - - - 20120809 -9606 474289 OA5 - - RGD:1298420 11 - Osteoarthritis QTL 5 unknown - - - - 20120809 -9606 474290 OA6 - - RGD:1298435 12 - Osteoarthritis QTL 6 unknown - - - - 20120809 -9606 474291 OA7 - - RGD:1298460 13 - Osteoarthritis QTL 7 unknown - - - - 20120809 -9606 474292 OA8 - - RGD:1298436 19 - Osteoarthritis QTL 8 unknown - - - - 20120809 -9606 474293 OA9 - - RGD:1298467 19 - Osteoarthritis QTL 9 unknown - - - - 20120809 -9606 474294 BW19 - - RGD:1298437 1 - Body weight QTL 19 unknown - - - - 20120809 -9606 474295 BW20 - - RGD:1298503 8 - Body weight QTL 20 unknown - - - - 20120809 -9606 474296 BFD1 - - RGD:1298487 3 - Body fluid distribution QTL 1 unknown - - - - 20120809 -9606 474297 BFD2 - - RGD:1298411 5 - Body fluid distribution QTL 2 unknown - - - - 20120809 -9606 474298 BFD3 - - RGD:1298426 6 - Body fluid distribution QTL 3 unknown - - - - 20120809 -9606 474299 BFD4 - - RGD:1298407 6 - Body fluid distribution QTL 4 unknown - - - - 20120809 -9606 474300 BFD5 - - RGD:1298414 7 - Body fluid distribution QTL 5 unknown - - - - 20120809 -9606 474301 BP5 - - RGD:1298491 1 - Blood pressure QTL 5 unknown - - - - 20120809 -9606 474302 BP6 - - RGD:1298448 10 - Blood pressure QTL 6 unknown - - - - 20120809 -9606 474303 BW11 - - RGD:1298496 3 - Body weight QTL 11 unknown - - - - 20120809 -9606 474304 BW33 - - RGD:1300032 2 - Body weight QTL 33 unknown - - - - 20120809 -9606 474305 BW32 - - RGD:1300017 18 - Body weight QTL 32 unknown - - - - 20120809 -9606 474306 BW34 - - RGD:1300027 19 - Body weight QTL 34 unknown - - - - 20120809 -9606 474307 BW18 - - RGD:1300016 7 - Body weight QTL 18 unknown - - - - 20120809 -9606 474308 UAE1 - - RGD:1298499 19 - Urinary albumin excretion QTL 1 unknown - - - - 20120809 -9606 474309 UAE2 - - RGD:1298449 12 - Urinary albumin excretion QTL 2 unknown - - - - 20120809 -9606 474310 OA26 - - RGD:1298417 4 - Osteoarthritis QTL 26 unknown - - - - 20120809 -9606 474311 BW15 - - RGD:1300018 4 - Body weight QTL 15 unknown - - - - 20120809 -9606 474312 BW12 - - RGD:1299998 1 - Body weight QTL 12 unknown - - - - 20120809 -9606 474313 BW13 - - RGD:1300029 2 - Body weight QTL 13 unknown - - - - 20120809 -9606 474314 BW14 - - RGD:1300003 6 - Body weight QTL 14 unknown - - - - 20120809 -9606 474333 GEVQ2 - - MIM:608878 20 20q13 gene expression, variation in, quantitative trait locus unknown - - - - 20120622 -9606 474334 GEVQ1 - - MIM:608875 14 14q32 gene expression, variation in, quantitative trait locus unknown - - - - 20120622 -9606 474337 SUMO1P2 - bA375F2.1 HGNC:33149 1 1q24.2 SUMO1 pseudogene 2 pseudo SUMO1P2 SUMO1 pseudogene 2 O - 20121230 -9606 474338 SUMO1P3 - - HGNC:33150 1 1q22 SUMO1 pseudogene 3 pseudo SUMO1P3 SUMO1 pseudogene 3 O - 20121230 -9606 474340 SUMO1P4 - - HGNC:33151 19 19q13 SUMO1 pseudogene 4 pseudo SUMO1P4 SUMO1 pseudogene 4 O - 20121230 -9606 474341 SUMO1P5 - - HGNC:33152 5 5q23 SUMO1 pseudogene 5 pseudo SUMO1P5 SUMO1 pseudogene 5 O - 20121230 -9606 474343 SPIN2B RP3-323P24.2 SPIN-2|SPIN2_duplicate|dJ323P24.2 HGNC:33147|MIM:300517|Ensembl:ENSG00000186787|HPRD:18662|Vega:OTTHUMG00000021680 X Xp11.1 spindlin family, member 2B protein-coding SPIN2B spindlin family, member 2B O SPIN-2B|spindlin family, member 2 duplicate|spindlin-2B|spindlin-like protein 2B|telomeric SPIN2 copy 20121230 -9606 474344 GIMAP6 - IAN-2|IAN-6|IAN2|IAN6 HGNC:21918|Ensembl:ENSG00000133561|HPRD:13576|Vega:OTTHUMG00000159137 7 - GTPase, IMAP family member 6 protein-coding GIMAP6 GTPase, IMAP family member 6 O GTPase IMAP family member 6|immune associated nucleotide 2|immune associated nucleotide 6 20121230 -9606 474345 GIMAP3P - GIMAP3 HGNC:30975 7 7q36.1 GTPase, IMAP family member 3 pseudogene pseudo GIMAP3P GTPase, IMAP family member 3 pseudogene O - 20121230 -9606 474354 LRRC18 UNQ9338/PRO34010 UNQ933|UNQ9338|VKGE9338 HGNC:23199|Ensembl:ENSG00000165383|HPRD:17450|Vega:OTTHUMG00000018182 10 10q11.23 leucine rich repeat containing 18 protein-coding LRRC18 leucine rich repeat containing 18 O leucine-rich repeat-containing protein 18 20121230 -9606 474381 H2AFB2 - H2A.Bbd HGNC:18298|Ensembl:ENSG00000198307|HPRD:18663|Vega:OTTHUMG00000034292 X Xq28 H2A histone family, member B2 protein-coding H2AFB2 H2A histone family, member B2 O H2A Barr body deficient|H2A Barr body-deficient|histone H2A-Bbd type 2/3 20121230 -9606 474382 H2AFB1 - H2A.Bbd HGNC:22516|Ensembl:ENSG00000198082|HPRD:18664|Vega:OTTHUMG00000034291 X Xq28 H2A histone family, member B1 protein-coding H2AFB1 H2A histone family, member B1 O H2A Barr body-deficient|histone H2A-Bbd type 1 20121230 -9606 474383 F8A2 - - HGNC:31849|Ensembl:ENSG00000198444|HPRD:18665|Vega:OTTHUMG00000034293 X Xq28 coagulation factor VIII-associated 2 protein-coding F8A2 coagulation factor VIII-associated 2 O coagulation factor VIII-associated (intronic transcript) 2|cpG island protein|factor VIII intron 22 protein 20121230 -9606 474384 F8A3 - - HGNC:31850|Ensembl:ENSG00000185990|HPRD:18666|Vega:OTTHUMG00000034289 X Xq28 coagulation factor VIII-associated 3 protein-coding F8A3 coagulation factor VIII-associated 3 O coagulation factor VIII-associated (intronic transcript) 3|cpG island protein|factor VIII intron 22 protein 20121230 -9606 474386 SNAX1 - ADSA HGNC:23701|MIM:608984 8 8p12-q12.1 sensory ataxia 1 (autosomal dominant) unknown SNAX1 sensory ataxia 1 (autosomal dominant) O - 20120622 -9606 474387 OFC4 - - MIM:608371 4 4q21-q31 Orofacial cleft 4 unknown - - - - 20120622 -9606 474388 CMM4 - - MIM:608035 1 1p22 Melanoma, cutaneous malignant, 4 unknown - - - - 20120622 -9606 492295 RAC1P3 - Psi3Rac1 HGNC:31833 13 13q14.11 ras-related C3 botulinum toxin substrate 1 pseudogene 3 pseudo RAC1P3 ras-related C3 botulinum toxin substrate 1 pseudogene 3 O - 20121230 -9606 492303 GEMIN8P4 - - HGNC:37979 1 1p22 gem (nuclear organelle) associated protein 8 pseudogene 4 pseudo GEMIN8P4 gem (nuclear organelle) associated protein 8 pseudogene 4 O - 20121230 -9606 492307 C8orf22 - - HGNC:31745|Ensembl:ENSG00000168333|HPRD:16670|Vega:OTTHUMG00000164217 8 8q11 chromosome 8 open reading frame 22 protein-coding C8orf22 chromosome 8 open reading frame 22 O exocrine differentiation and proliferation factor-like protein|pancreatic progenitor cell differentiation and proliferation factor-like protein 20121230 -9606 492311 IGIP - C5orf53 HGNC:33847|Ensembl:ENSG00000182700|HPRD:17411|Vega:OTTHUMG00000163359 5 5q31 IgA-inducing protein homolog (Bos taurus) protein-coding IGIP IgA-inducing protein homolog (Bos taurus) O IgA-inducing protein (Bos taurus)|IgA-inducing protein homolog 20121230 -9606 493753 COA5 - 6330578E17Rik|C2orf64|Pet191 HGNC:33848|MIM:613920|Ensembl:ENSG00000183513|HPRD:17563|Vega:OTTHUMG00000153101 2 2q11.2 cytochrome c oxidase assembly factor 5 protein-coding COA5 cytochrome c oxidase assembly factor 5 O protein C2orf64 20121230 -9606 493754 LOC493754 - - - 7 7q11.21 RAB guanine nucleotide exchange factor (GEF) 1 pseudogene pseudo - - - - 20121230 -9606 493812 HCG11 - bK14H9.3 HGNC:17707 6 6p22.2 HLA complex group 11 (non-protein coding) miscRNA HCG11 HLA complex group 11 (non-protein coding) O - 20121230 -9606 493813 HCG13P - dJ193B12.5 HGNC:17724 6 6p21 HLA complex group 13 pseudogene pseudo HCG13P HLA complex group 13 pseudogene O - 20120404 -9606 493816 TUBBP4 - bA537H15.5 HGNC:19913 9 9p13.3 tubulin, beta pseudogene 4 pseudo TUBBP4 tubulin, beta pseudogene 4 O - 20121230 -9606 493818 MYMY3 - - HGNC:20769|MIM:608796 8 8q23 moyamoya disease 3 unknown MYMY3 moyamoya disease 3 O - 20120622 -9606 493821 ZNF603P - p373c6.7 HGNC:23322 6 6p21 zinc finger protein 603, pseudogene pseudo ZNF603P zinc finger protein 603, pseudogene O - 20121230 -9606 493824 ZNF601P - D6S2711|PRD51p|dJ313I6.8 HGNC:29407 6 6p21 zinc finger protein 601, pseudogene pseudo ZNF601P zinc finger protein 601, pseudogene O - 20121230 -9606 493825 POLR2LP - - HGNC:31340 6 6p21.3 polymerase (RNA) II (DNA directed) polypeptide L pseudogene pseudo POLR2LP polymerase (RNA) II (DNA directed) polypeptide L pseudogene O - 20121230 -9606 493829 TRIM72 - MG53 HGNC:32671|MIM:613288|Ensembl:ENSG00000177238|HPRD:17412|Vega:OTTHUMG00000176754 16 16p11.2 tripartite motif containing 72 protein-coding TRIM72 tripartite motif containing 72 O mitsugumin-53|tripartite motif-containing 72|tripartite motif-containing protein 72 20121230 -9606 493856 CISD2 - ERIS|Miner1|NAF-1|WFS2|ZCD2 HGNC:24212|MIM:611507|Ensembl:ENSG00000145354|HPRD:17413|Vega:OTTHUMG00000161014 4 4q24 CDGSH iron sulfur domain 2 protein-coding CISD2 CDGSH iron sulfur domain 2 O CDGSH iron-sulfur domain-containing protein 2|endoplasmic reticulum intermembrane small protein|mitoNEET related 1|mitoNEET-related 1 protein|nutrient-deprivation autophagy factor-1|zinc finger, CDGSH-type domain 2 20121230 -9606 493860 CCDC73 - NY-SAR-79 HGNC:23261|MIM:612328|Ensembl:ENSG00000186714|HPRD:17414|Vega:OTTHUMG00000166279 11 11p13 coiled-coil domain containing 73 protein-coding CCDC73 coiled-coil domain containing 73 O coiled-coil domain-containing protein 73|sarcoma antigen NY-SAR-79 20121230 -9606 493861 EID3 - NS4EB|NSE4B|NSMCE4B HGNC:32961|MIM:612986|Ensembl:ENSG00000255150|HPRD:17415|Vega:OTTHUMG00000165912 12 12q23.3 EP300 interacting inhibitor of differentiation 3 protein-coding EID3 EP300 interacting inhibitor of differentiation 3 O E1A-like inhibitor of differentiation 3|EID-1-like inhibitor of differentiation 3|EID-3|EP300-interacting inhibitor of differentiation 3|non-SMC element 4 homolog B|non-structural maintenance of chromosomes element 4 homolog B 20121230 -9606 493862 ARCC1 - - MIM:609026 6 6p12-q12 Age-related cortical cataract 1 unknown - - - - 20120622 -9606 493869 GPX8 UNQ847/PRO1785 EPLA847|GPx-8|GSHPx-8|UNQ847 HGNC:33100|Ensembl:ENSG00000164294|HPRD:17416|Vega:OTTHUMG00000162601 5 5q11.2 glutathione peroxidase 8 (putative) protein-coding GPX8 glutathione peroxidase 8 (putative) O probable glutathione peroxidase 8 20121230 -9606 493900 TMEM9B-AS1 - C11orf18 HGNC:19230 11 11p15.3 TMEM9B antisense RNA 1 miscRNA TMEM9B-AS1 TMEM9B antisense RNA 1 O - 20121117 -9606 493901 RNASE12 - - HGNC:24211|Ensembl:ENSG00000206171|Ensembl:ENSG00000258436|HPRD:18667|Vega:OTTHUMG00000170991 14 14q11.1 ribonuclease, RNase A family, 12 (non-active) protein-coding RNASE12 ribonuclease, RNase A family, 12 (non-active) O ribonuclease-like protein 12 20121230 -9606 493911 PHOSPHO2 - - HGNC:28316|Ensembl:ENSG00000144362|HPRD:17848|Vega:OTTHUMG00000153981 2 2q31.1 phosphatase, orphan 2 protein-coding PHOSPHO2 phosphatase, orphan 2 O pyridoxal phosphate phosphatase PHOSPHO2 20121230 -9606 493913 PAPPA-AS1 - DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 HGNC:35152|MIM:610689 9 9q33.2 PAPPA antisense RNA 1 unknown PAPPA-AS1 PAPPA antisense RNA 1 O - 20121021 -9606 493987 MT1P1 RP11-435O5.1 bA435O5.3 HGNC:23681 9 9q22.32 metallothionein 1 pseudogene 1 pseudo MT1P1 metallothionein 1 pseudogene 1 O - 20121230 -9606 494028 CVMRF - - MIM:300471 X - cubitus valgus with mental retardation and unusual facies unknown - - - - 20120622 -9606 494029 MENOQ1 - - MIM:300488 X Xp21.3 menopause, natural, age at, QTL unknown - - - - 20120622 -9606 494115 RBMXL1 RP4-531M19.2 RBM1 HGNC:25073|Ensembl:ENSG00000213516|HPRD:17417|Vega:OTTHUMG00000010661 1 1p22.2 RNA binding motif protein, X-linked-like 1 protein-coding RBMXL1 RNA binding motif protein, X-linked-like 1 O RNA binding motif protein, X-linked-like-1|heterogeneous nuclear ribonucleoprotein G-like 1 20121230 -9606 494118 SPANXN1 - CT11.6 HGNC:33174|MIM:300664|Ensembl:ENSG00000203923|HPRD:18090|Vega:OTTHUMG00000022593 X Xq27 SPANX family, member N1 protein-coding SPANXN1 SPANX family, member N1 O cancer/testis antigen family 11, member 6|nuclear-associated protein SPAN-Xn1|sperm protein associated with the nucleus on the X chromosome N1 20121230 -9606 494119 SPANXN2 - CT11.7|SPANX-N2 HGNC:33175|MIM:300665|Ensembl:ENSG00000203924|HPRD:18091|Vega:OTTHUMG00000022583 X Xq27.3 SPANX family, member N2 protein-coding SPANXN2 SPANX family, member N2 O cancer/testis antigen family 11, member 7|nuclear-associated protein SPAN-Xn2|sperm protein associated with the nucleus on the X chromosome N2 20121230 -9606 494127 LOC494127 - - - 9 9q21.33 NFYC pseudogene pseudo - - - - 20121230 -9606 494141 LOC494141 - - - 11 11p15.1 solute carrier family 25, member 51 pseudogene pseudo - - - - 20121230 -9606 494142 DFNM2 - - HGNC:31866 8 8p23 deafness (mitochondrial) modifier 2 unknown DFNM2 deafness (mitochondrial) modifier 2 O - 20110215 -9606 494143 CHAC2 - - HGNC:32363|Ensembl:ENSG00000143942|HPRD:17418|Vega:OTTHUMG00000151824 2 2p16 ChaC, cation transport regulator homolog 2 (E. coli) protein-coding CHAC2 ChaC, cation transport regulator homolog 2 (E. coli) O ChaC, cation transport regulator-like 2|cation transport regulator-like protein 2 20121230 -9606 494148 DFNB55 - - HGNC:28876|MIM:609952 4 4q12-q13.2 deafness, autosomal recessive 55 unknown DFNB55 deafness, autosomal recessive 55 O - 20120622 -9606 494149 DFNB56 - - HGNC:31877 - - deafness, autosomal recessive 56 unknown DFNB56 deafness, autosomal recessive 56 O - 20110215 -9606 494150 LOC494150 - - - 12 12q13 prohibitin pseudogene pseudo - - - - 20121230 -9606 494188 FBXO47 - - HGNC:31969|MIM:609498|Ensembl:ENSG00000204952|HPRD:16886|Vega:OTTHUMG00000178945 17 17q12|17q12 F-box protein 47 protein-coding FBXO47 F-box protein 47 O F-box only protein 47 20121230 -9606 494197 SPANXN5 - CT11.10|SPANX-N5 HGNC:33178|MIM:300668|Ensembl:ENSG00000204363|HPRD:18094|Vega:OTTHUMG00000021590 X Xp11.22 SPANX family, member N5 protein-coding SPANXN5 SPANX family, member N5 O cancer/testis antigen family 11, member 10|nuclear-associated protein SPAN-Xn5|sperm protein associated with the nucleus on the X chromosome N5 20121230 -9606 494323 MIR361 - MIRN361|hsa-mir-361 HGNC:31867|miRBase:MI0000760 X - microRNA 361 miscRNA MIR361 microRNA 361 O - 20121230 -9606 494324 MIR375 - MIRN375|hsa-mir-375|miRNA375 HGNC:31868|MIM:611173|miRBase:MI0000783 2 2q35 microRNA 375 miscRNA MIR375 microRNA 375 O - 20121230 -9606 494325 MIR376A1 - MIR376A-1|MIRN376A|MIRN376A-1|MIRN376A1 HGNC:31869|MIM:610959|miRBase:MI0000784 14 14q32.31 microRNA 376a-1 miscRNA MIR376A1 microRNA 376a-1 O - 20121230 -9606 494326 MIR377 - MIRN377|hsa-mir-377 HGNC:31870|miRBase:MI0000785 14 14q32.31 microRNA 377 miscRNA MIR377 microRNA 377 O - 20121230 -9606 494327 MIR378A - MIR378|MIRN378|hsa-mir-378|hsa-mir-378a|miRNA378 HGNC:31871|MIM:611957|miRBase:MI0000786 5 5q32 microRNA 378a miscRNA MIR378A microRNA 378a O - 20121230 -9606 494328 MIR379 - MIRN379|hsa-mir-379 HGNC:31872|miRBase:MI0000787 14 14q32.31 microRNA 379 miscRNA MIR379 microRNA 379 O - 20121230 -9606 494329 MIR380 - MIR380-3p|MIRN380|hsa-mir-380 HGNC:31873|MIM:613654|miRBase:MI0000788 14 14q32.31 microRNA 380 miscRNA MIR380 microRNA 380 O - 20121230 -9606 494330 MIR381 - MIRN381|hsa-mir-381 HGNC:31874|miRBase:MI0000789 14 14q32.31 microRNA 381 miscRNA MIR381 microRNA 381 O - 20121230 -9606 494331 MIR382 - MIRN382|hsa-mir-382 HGNC:31875|miRBase:MI0000790 14 14q32.31 microRNA 382 miscRNA MIR382 microRNA 382 O - 20121230 -9606 494332 MIR383 - MIRN383|hsa-mir-383 HGNC:31876|miRBase:MI0000791 8 8p22 microRNA 383 miscRNA MIR383 microRNA 383 O - 20121230 -9606 494333 MIR384 - MIRN384|hsa-mir-384 HGNC:31878|miRBase:MI0001145 X Xq21.1 microRNA 384 miscRNA MIR384 microRNA 384 O - 20121230 -9606 494334 MIR422A - MIRN422A HGNC:31879|miRBase:MI0001444 15 15q22.31 microRNA 422a miscRNA MIR422A microRNA 422a O - 20121230 -9606 494335 MIR423 - MIRN423|hsa-mir-423 HGNC:31880|miRBase:MI0001445 17 17q11.2 microRNA 423 miscRNA MIR423 microRNA 423 O - 20121230 -9606 494336 MIR424 - MIR322|MIRN424|hsa-mir-424|miRNA424 HGNC:31881|MIM:300682|miRBase:MI0001446 X Xq26.3 microRNA 424 miscRNA MIR424 microRNA 424 O - 20121230 -9606 494337 MIR425 - MIRN425|hsa-mir-425 HGNC:31882|miRBase:MI0001448 3 3p21.31 microRNA 425 miscRNA MIR425 microRNA 425 O - 20121230 -9606 494446 NRCLP3 - - MIM:609039 21 21q11.2 Narcolepsy 3 unknown - - - - 20120622 -9606 494447 COILP2 - COILP-2 HGNC:25389 4 4q27-q28 coilin pseudogene 2 pseudo COILP2 coilin pseudogene 2 O - 20121230 -9606 494470 RNF165 - ARKL2 HGNC:31696|Ensembl:ENSG00000141622|Vega:OTTHUMG00000179230 18 18q21.1 ring finger protein 165 protein-coding RNF165 ring finger protein 165 O RING finger protein 165 20121230 -9606 494513 DFNB59 - PJVK HGNC:29502|MIM:610219|Ensembl:ENSG00000204311|Vega:OTTHUMG00000154425 2 2q31.2 deafness, autosomal recessive 59 protein-coding DFNB59 deafness, autosomal recessive 59 O autosomal recessive deafness type 59 protein|pejvakin 20121230 -9606 494514 C18orf56 - - HGNC:29553|Ensembl:ENSG00000176912|HPRD:18668|Vega:OTTHUMG00000178257 18 18p11.32 chromosome 18 open reading frame 56 protein-coding C18orf56 chromosome 18 open reading frame 56 O putative uncharacterized protein C18orf56 20121230 -9606 494540 TBCAP1 - - HGNC:42630 X Xp21 tubulin folding cofactor A pseudogene 1 pseudo TBCAP1 tubulin folding cofactor A pseudogene 1 O - 20121230 -9606 494541 TBCAP2 - - HGNC:42631 1 1p36 tubulin folding cofactor A pseudogene 2 pseudo TBCAP2 tubulin folding cofactor A pseudogene 2 O - 20121230 -9606 494542 TBCAP3 - - HGNC:42632 4 4q23 tubulin folding cofactor A pseudogene 3 pseudo TBCAP3 tubulin folding cofactor A pseudogene 3 O - 20121230 -9606 494551 WEE2 hCG_39453 WEE1B HGNC:19684|MIM:614084|Ensembl:ENSG00000214102|Vega:OTTHUMG00000157536 7 7q32 WEE1 homolog 2 (S. pombe) protein-coding WEE2 WEE1 homolog 2 (S. pombe) O wee1-like protein kinase 1B|wee1-like protein kinase 2|wee1B kinase 20121230 -9606 494555 TWF1P2 RP13-228J13.6 A6ps2|PTK9P2 HGNC:21737 X Xq28 twinfilin 1 pseudogene 2 pseudo TWF1P2 twinfilin 1 pseudogene 2 O - 20121230 -9606 494558 LOC494558 - - - 9 9q21.11 uncharacterized LOC494558 miscRNA - - - - 20121230 -9606 497048 KU-MEL-3 - - HPRD:17255 6 6p25.3-p24.1 KU-MEL-3 unknown - - - - 20121230 -9606 497049 FLJ25758 - - HPRD:16923 19 19p13.3 MAP/microtubule affinity-regulating kinase 1 pseudogene pseudo - - - - 20121230 -9606 497188 GLC1I - - HGNC:31912|MIM:609745 15 15q11-q13 glaucoma 1, open angle, I unknown GLC1I glaucoma 1, open angle, I O - 20120622 -9606 497189 TIFAB - - HGNC:34024|MIM:612663|Ensembl:ENSG00000255833|Vega:OTTHUMG00000129140 5 5q31.1 TRAF-interacting protein with forkhead-associated domain, family member B protein-coding TIFAB TRAF-interacting protein with forkhead-associated domain, family member B O TIFA-like protein|TIFA-related protein TIFAB|TRAF-interacting protein with FHA domain-containing protein B 20121230 -9606 497190 CLEC18B UNQ306/PRO347 MRCL2 HGNC:33849|Ensembl:ENSG00000140839|HPRD:17419|Vega:OTTHUMG00000176998 16 16q22.3 C-type lectin domain family 18, member B protein-coding CLEC18B C-type lectin domain family 18, member B O C-type lectin domain family 18 member B|mannose receptor-like 2|mannose receptor-like protein 1|secretory protein LOC497190 20121230 -9606 497231 CLN9 - - HGNC:32782|MIM:609055 - - ceroid-lipofuscinosis, neuronal 9 unknown CLN9 ceroid-lipofuscinosis, neuronal 9 O - 20110714 -9606 497256 LOC497256 - - - 9 9q22.1 uncharacterized LOC497256 unknown - - - - 20120511 -9606 497257 LOC497257 - - - - - uncharacterized LOC497257 protein-coding - - - - 20120508 -9606 497258 BDNF-AS - ANTI-BDNF|BDNF|BDNF-AS1|BDNFOS|NCRNA00049 HGNC:20608|MIM:611468 11 11p14.1 BDNF antisense RNA miscRNA BDNF-AS BDNF antisense RNA O - 20121230 -9606 497259 C18orf61 - - - 18 18p11.22 uncharacterized LOC497259 miscRNA - - - - 20121230 -9606 497634 LINC00293 - BEYLA|NCRNA00293 HGNC:39078|MIM:609543 8 8q11.1 long intergenic non-protein coding RNA 293 miscRNA LINC00293 long intergenic non-protein coding RNA 293 O - 20121230 -9606 497657 ANIB3 - AIB3 HGNC:31942|MIM:609122 1 1p36.13-p34.3 aneurysm, intracranial berry 3 unknown ANIB3 aneurysm, intracranial berry 3 O - 20120622 -9606 497658 ARVD7 - ARVC7 MIM:609160 - - Arrhythmogenic right ventricular dysplasia, familial, 7 unknown - - - - 20121027 -9606 497661 C18orf32 - - HGNC:31690|Ensembl:ENSG00000177576|Vega:OTTHUMG00000179688 18 18q21.1 chromosome 18 open reading frame 32 protein-coding C18orf32 chromosome 18 open reading frame 32 O UPF0729 protein C18orf32|putative NF-kappa-B-activating protein 200|putative NFkB activating protein 20121230 -9606 497662 RRIS - - MIM:609116 10 10q26 Respiratory rhythmicity in sleep unknown - - - - 20120622 -9606 503496 MRX86 - - HGNC:25212 X Xp11.3-q13.1 mental retardation, X-linked 86 unknown MRX86 mental retardation, X-linked 86 O - 20110702 -9606 503497 MS4A13 - - HGNC:16674|Ensembl:ENSG00000204979|HPRD:17604|Vega:OTTHUMG00000167615 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 13 protein-coding MS4A13 membrane-spanning 4-domains, subfamily A, member 13 O membrane-spanning 4-domains subfamily A member 13|testis-expressed transmembrane protein 4|testis-expressed transmembrane-4 protein 20121230 -9606 503519 LOC503519 - - - 15 15q11.2 uncharacterized LOC503519 miscRNA - - - - 20121230 -9606 503538 A1BG-AS1 - A1BG-AS|A1BGAS|NCRNA00181 HGNC:37133 19 19q13.4 A1BG antisense RNA 1 miscRNA A1BG-AS1 A1BG antisense RNA 1 O - 20121230 -9606 503540 LOC503540 - - - 5 5p14.2 AKT interacting protein pseudogene pseudo - - - - 20121230 -9606 503542 SPRN - SHADOO|SHO|bA108K14.1 HGNC:16871|MIM:610447|Ensembl:ENSG00000203772|HPRD:18499|Vega:OTTHUMG00000019324 10 10q26.3 shadow of prion protein homolog (zebrafish) protein-coding SPRN shadow of prion protein homolog (zebrafish) O hypothetical protein BC004409|protein shadoo|shadow of prion protein 20121230 -9606 503543 BTF3P9 CTD-2090I13.4 - HGNC:38573 1 1q42 basic transcription factor 3 pseudogene 9 pseudo BTF3P9 basic transcription factor 3 pseudogene 9 O - 20121230 -9606 503569 FLJ35946 - - - 5 5q21.1 uncharacterized protein FLJ35946 miscRNA - - - - 20121230 -9606 503582 ARGFX - - HGNC:30146|MIM:611164|Ensembl:ENSG00000186103|HPRD:18525|Vega:OTTHUMG00000159395 3 3q13.33 arginine-fifty homeobox protein-coding ARGFX arginine-fifty homeobox O - 20121230 -9606 503583 ARGFXP1 - - HGNC:17252 5 5q23.2 arginine-fifty homeobox pseudogene 1 pseudo ARGFXP1 arginine-fifty homeobox pseudogene 1 O - 20121230 -9606 503611 TAAR7P - - HGNC:31925 6 6q23.2 trace amine associated receptor 7, pseudogene pseudo TAAR7P trace amine associated receptor 7, pseudogene O - 20121230 -9606 503612 TAAR4P - - HGNC:31924 6 6q23.2 trace amine associated receptor 4, pseudogene pseudo TAAR4P trace amine associated receptor 4, pseudogene O - 20121230 -9606 503613 PSORS10 - - HGNC:31919|MIM:612410 18 18p11.23 psoriasis susceptibility 10 unknown PSORS10 psoriasis susceptibility 10 O - 20120622 -9606 503614 DEFB107B - HsT21816 HGNC:31918|Ensembl:ENSG00000198129|Vega:OTTHUMG00000149987 8 8p23.1 defensin, beta 107B protein-coding DEFB107B defensin, beta 107B O beta-defensin 107|beta-defensin 7|defensin, beta 107 20121230 -9606 503618 DEFB104B - BD-4|DEFB-4|hBD-4 HGNC:26165|Ensembl:ENSG00000177023|Vega:OTTHUMG00000149986 8 8p23.1 defensin, beta 104B protein-coding DEFB104B defensin, beta 104B O beta-defensin 104|beta-defensin 4|defensin, beta 104 20121230 -9606 503627 TPRX2P - TPRX2P1|TPRXP1 HGNC:32175 19 19q13.32 tetra-peptide repeat homeobox 2 pseudogene pseudo TPRX2P tetra-peptide repeat homeobox 2 pseudogene O - 20121230 -9606 503628 TPRX1P1 - TPRXP2 HGNC:32176 10 10q22.3 tetra-peptide repeat homeobox 1 pseudogene 1 pseudo TPRX1P1 tetra-peptide repeat homeobox 1 pseudogene 1 O - 20121230 -9606 503630 DUXAP1 - - HGNC:32180 2 2p11.2 double homeobox A pseudogene 1 pseudo DUXAP1 double homeobox A pseudogene 1 O - 20121230 -9606 503631 DUXAP2 - - HGNC:32181 8 8q22.3 double homeobox A pseudogene 2 pseudo DUXAP2 double homeobox A pseudogene 2 O - 20121230 -9606 503632 DUXAP3 - - HGNC:32182 10 10q11.21 double homeobox A pseudogene 3 pseudo DUXAP3 double homeobox A pseudogene 3 O - 20121230 -9606 503633 DUXAP4 - - HGNC:32183 10 10q11.21 double homeobox A pseudogene 4 pseudo DUXAP4 double homeobox A pseudogene 4 O - 20121230 -9606 503634 DUXAP5 - - HGNC:32184 11 11q23.3 double homeobox A pseudogene 5 pseudo DUXAP5 double homeobox A pseudogene 5 O - 20121230 -9606 503635 DUXAP6 - - HGNC:32185 15 15q26.1 double homeobox A pseudogene 6 pseudo DUXAP6 double homeobox A pseudogene 6 O - 20121230 -9606 503636 DUXAP7 - - HGNC:32186 20 20p11.23 double homeobox A pseudogene 7 pseudo DUXAP7 double homeobox A pseudogene 7 O - 20121230 -9606 503637 DUXAP8 - - HGNC:32187 22 22q11.21 double homeobox A pseudogene 8 pseudo DUXAP8 double homeobox A pseudogene 8 O - 20121230 -9606 503638 DUXAP9 - - HGNC:32188 14 14q11.2 double homeobox A pseudogene 9 pseudo DUXAP9 double homeobox A pseudogene 9 O - 20121209 -9606 503639 DUXAP10 - - HGNC:32189 14 14q11.2 double homeobox A pseudogene 10 pseudo DUXAP10 double homeobox A pseudogene 10 O - 20121209 -9606 503640 ARGFXP2 - - HGNC:23977 17 17q11.2 arginine-fifty homeobox pseudogene 2 pseudo ARGFXP2 arginine-fifty homeobox pseudogene 2 O - 20121230 -9606 503641 DPRXP1 - - HGNC:32167 2 2q32.1 divergent-paired related homeobox pseudogene 1 pseudo DPRXP1 divergent-paired related homeobox pseudogene 1 O - 20121230 -9606 503643 DPRXP2 - - HGNC:32168 6 6p21.31 divergent-paired related homeobox pseudogene 2 pseudo DPRXP2 divergent-paired related homeobox pseudogene 2 O - 20121230 -9606 503644 DPRXP3 - - HGNC:32169 14 14q13.2 divergent-paired related homeobox pseudogene 3 pseudo DPRXP3 divergent-paired related homeobox pseudogene 3 O - 20121230 -9606 503645 DPRXP4 - - HGNC:32170 17 17q11.2 divergent-paired related homeobox pseudogene 4 pseudo DPRXP4 divergent-paired related homeobox pseudogene 4 O - 20121230 -9606 503646 DPRXP5 - - HGNC:32171 21 21q22.13 divergent-paired related homeobox pseudogene 5 pseudo DPRXP5 divergent-paired related homeobox pseudogene 5 O - 20121230 -9606 503647 DPRXP6 - - HGNC:32172 X Xp11.4 divergent-paired related homeobox pseudogene 6 pseudo DPRXP6 divergent-paired related homeobox pseudogene 6 O - 20121230 -9606 503648 DPRXP7 - - HGNC:32173 X Xq23 divergent-paired related homeobox pseudogene 7 pseudo DPRXP7 divergent-paired related homeobox pseudogene 7 O - 20121230 -9606 503693 LOH12CR2 - LOH2CR12 HGNC:26524 12 12p13.2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) miscRNA LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) O - 20121230 -9606 503694 DEFB108P1 - DEFB-8|DEFB108|DEFB108A HGNC:18089 8 8p23.1 defensin, beta 108, pseudogene 1 pseudo DEFB108P1 defensin, beta 108, pseudogene 1 O - 20121209 -9606 503834 DPRX - - HGNC:32166|MIM:611165|Ensembl:ENSG00000204595|HPRD:10561|Vega:OTTHUMG00000170632 19 19q13.42 divergent-paired related homeobox protein-coding DPRX divergent-paired related homeobox O divergent paired-related homeobox 20121230 -9606 503835 DUXA - - HGNC:32179|MIM:611168|Ensembl:ENSG00000258873|HPRD:10619|Vega:OTTHUMG00000170714 19 19q13.43 double homeobox A protein-coding DUXA double homeobox A O double homeobox protein A 20121230 -9606 503837 DEFB108P2 - - HGNC:30847 8 8p23.1 defensin, beta 108, pseudogene 2 pseudo DEFB108P2 defensin, beta 108, pseudogene 2 O - 20121230 -9606 503838 DEFB109P3 - - HGNC:30838 8 8p23.1 defensin, beta 109, pseudogene 3 pseudo DEFB109P3 defensin, beta 109, pseudogene 3 O - 20121230 -9606 503839 DEFB109P2 - - HGNC:30592 8 8p23.1 defensin, beta 109, pseudogene 2 pseudo DEFB109P2 defensin, beta 109, pseudogene 2 O - 20121230 -9606 503840 DEFB108P4 - - HGNC:30174 8 8p23.1 defensin, beta 108, pseudogene 4 pseudo DEFB108P4 defensin, beta 108, pseudogene 4 O - 20121230 -9606 503841 DEFB106B - - HGNC:28879|Ensembl:ENSG00000187082|Vega:OTTHUMG00000129312 8 8p23.1 defensin, beta 106B protein-coding DEFB106B defensin, beta 106B O BD-6|DEFB-6|beta-defensin 106|beta-defensin 6|defensin, beta 106 20121230 -9606 503842 DFNB60 - - HGNC:18300 5 5q22-q31 deafness, autosomal recessive 60 unknown DFNB60 deafness, autosomal recessive 60 O - 20110215 -9606 504175 OR3D1P - - HGNC:25339 1 1q44 olfactory receptor, family 3, subfamily D, member 1 pseudogene pseudo OR3D1P olfactory receptor, family 3, subfamily D, member 1 pseudogene O - 20121230 -9606 504180 DEFB105B - - HGNC:29930|Ensembl:ENSG00000186599|Vega:OTTHUMG00000129315 8 8p23.1 defensin, beta 105B protein-coding DEFB105B defensin, beta 105B O BD-5|DEFB-5|beta-defensin 105|beta-defensin 5|defensin, beta 105 20121230 -9606 504181 OR5BN2P - - HGNC:29194 11 11q11 olfactory receptor, family 5, subfamily BN, member 2 pseudogene pseudo OR5BN2P olfactory receptor, family 5, subfamily BN, member 2 pseudogene O - 20121230 -9606 504185 DEFB108P3 - - HGNC:26227 8 8p23.1 defensin, beta 108, pseudogene 3 pseudo DEFB108P3 defensin, beta 108, pseudogene 3 O - 20121230 -9606 504189 OR8U8 - - HGNC:27538|HPRD:18488 11 11q11 olfactory receptor, family 8, subfamily U, member 8 protein-coding OR8U8 olfactory receptor, family 8, subfamily U, member 8 O olfactory receptor 8U8 20121230 -9606 504190 OR8U9 - - HGNC:29166|HPRD:18489 11 11q1 olfactory receptor, family 8, subfamily U, member 9 protein-coding OR8U9 olfactory receptor, family 8, subfamily U, member 9 O olfactory receptor 8U9 20121230 -9606 504191 OR9G9 - - HGNC:31940|HPRD:18490 11 11q11 olfactory receptor, family 9, subfamily G, member 9 protein-coding OR9G9 olfactory receptor, family 9, subfamily G, member 9 O olfactory receptor 9G9 20121230 -9606 541461 PSHK2 - - MIM:609153 2 2q35-q36 Pseudohyperkalemia, familial, 2, due to red cell leak unknown - - - - 20120622 -9606 541465 CT45A6 RP13-36C9.7 CT45-6|CT45.6 HGNC:33271|MIM:300797|Ensembl:ENSG00000226907|HPRD:18672|Vega:OTTHUMG00000022495 X Xq26.3 cancer/testis antigen family 45, member A6 protein-coding CT45A6 cancer/testis antigen family 45, member A6 O cancer/testis antigen 45-4/6|cancer/testis antigen 45A4/45A6|cancer/testis antigen CT45-6|cancer/testis antigen family 45 member A4/A6 20121230 -9606 541466 CT45A1 XX-FW88277B6.1 CT45|CT45-1|CT45.1 HGNC:33267|MIM:300648|Ensembl:ENSG00000232478|HPRD:18673|Vega:OTTHUMG00000022488 X Xq26.3 cancer/testis antigen family 45, member A1 protein-coding CT45A1 cancer/testis antigen family 45, member A1 O XX-FW88277B6.1|cancer/testis antigen 45-1|cancer/testis antigen 45A1|cancer/testis antigen CT45-1|cancer/testis antigen family 45 member A1 20121230 -9606 541467 LOC541467 - - - 4 4q13.3 uncharacterized LOC541467 unknown - - - - 20120710 -9606 541468 LURAP1 - C1orf190|LRAP35a|LRP35A HGNC:32327|Ensembl:ENSG00000171357|HPRD:18478|Vega:OTTHUMG00000007605 1 1p34 leucine rich adaptor protein 1 protein-coding LURAP1 leucine rich adaptor protein 1 O NF-kappa-B activator C1orf190|leucine repeat adapter protein 35A|leucine repeat adaptor protein 35a 20121230 -9606 541471 LOC541471 - - - 2 2q13 uncharacterized LOC541471 miscRNA - - - - 20121230 -9606 541472 LOC541472 - - - 7 7p21 uncharacterized LOC541472 unknown - - - - 20121230 -9606 541473 LOC541473 - - HPRD:18674 7 7q11.23 FK506 binding protein 6, 36kDa pseudogene pseudo - - - - 20121230 -9606 541565 C8orf58 - - HGNC:32233|Ensembl:ENSG00000241852|HPRD:18675|Vega:OTTHUMG00000154160 8 8p21 chromosome 8 open reading frame 58 protein-coding C8orf58 chromosome 8 open reading frame 58 O uncharacterized protein C8orf58 20121230 -9606 541578 CXorf40B - - HGNC:17402|Ensembl:ENSG00000197021|HPRD:18676|Vega:OTTHUMG00000034327 X Xq28 chromosome X open reading frame 40B protein-coding CXorf40B chromosome X open reading frame 40B O protein CXorf40B 20121230 -9606 541611 HSP90AB6P - HSP90Bf HGNC:32540 13 13q32.1 heat shock protein 90kDa alpha (cytosolic), class B member 6, pseudogene pseudo HSP90AB6P heat shock protein 90kDa alpha (cytosolic), class B member 6, pseudogene O - 20121230 -9606 542767 C1QTNF9B-AS1 - PCOTH HGNC:39839|HPRD:18678 13 13q12 C1QTNF9B antisense RNA 1 protein-coding C1QTNF9B-AS1 C1QTNF9B antisense RNA 1 O C1QTNF9B antisense RNA 1 (non-protein coding)|prostate collagen triple helix protein|protein PCOTH 20121230 -9606 544315 COPD7 - - RGD:1331632 1 - Chronic obstructive pulmonary disease QTL 7 unknown - - - - 20120809 -9606 544316 COPD23 - - RGD:1331633 19 - Chronic obstructive pulmonary disease QTL 23 unknown - - - - 20120809 -9606 544317 AASTH1 - - RGD:1331634 4 - Allergic/atopic asthma related QTL 1 unknown - - - - 20120809 -9606 544318 OA19 - - RGD:1298405 3 - Osteoarthritis QTL 19 unknown - - - - 20120809 -9606 544319 BP7 - - RGD:1298408 12 - Blood pressure QTL 7 unknown - - - - 20120809 -9606 544320 OA18 - - RGD:1298413 4 - Osteoarthritis QTL 18 unknown - - - - 20120809 -9606 544321 OA13 - - RGD:1298416 4 - Osteoarthritis QTL 13 unknown - - - - 20120809 -9606 544322 OA28 - - RGD:1298418 16 - Osteoarthritis QTL 28 unknown - - - - 20120809 -9606 544323 OA20 - - RGD:1298419 2 - Osteoarthritis QTL 20 unknown - - - - 20120809 -9606 544324 OA23 - - RGD:1298423 16 - Osteoarthritis QTL 23 unknown - - - - 20120809 -9606 544325 OA21 - - RGD:1298424 4 - Osteoarthritis QTL 21 unknown - - - - 20120809 -9606 544326 BP8 - - RGD:1298428 15 - Blood pressure QTL 8 unknown - - - - 20120809 -9606 544327 OA10 - - RGD:1298432 2 - Osteoarthritis QTL 10 unknown - - - - 20120809 -9606 544328 OA11 - - RGD:1298440 2 - Osteoarthritis QTL 11 unknown - - - - 20120809 -9606 544329 OA17 - - RGD:1298451 11 - Osteoarthritis QTL 17 unknown - - - - 20120809 -9606 544330 BW1 - - RGD:1298454 4 - Body weight QTL 1 unknown - - - - 20120809 -9606 544331 OA14 - - RGD:1298462 7 - Osteoarthritis QTL 14 unknown - - - - 20120809 -9606 544332 OA22 - - RGD:1298490 6 - Osteoarthritis QTL 22 unknown - - - - 20120809 -9606 544333 OA12 - - RGD:1298494 2 - Osteoarthritis QTL 12 unknown - - - - 20120809 -9606 544334 OA27 - - RGD:1298495 16 - Osteoarthritis QTL 27 unknown - - - - 20120809 -9606 544335 OA15 - - RGD:1298504 9 - Osteoarthritis QTL 15 unknown - - - - 20120809 -9606 544336 BW17 - - RGD:1299997 20 - Body weight QTL 17 unknown - - - - 20120809 -9606 544337 BW16 - - RGD:1300006 10 - Body weight QTL 16 unknown - - - - 20120809 -9606 544338 BP29 - - RGD:1300007 20 - Blood pressure QTL 29 unknown - - - - 20120809 -9606 544416 COPD19 - - RGD:1331635 2 - Chronic obstructive pulmonary disease QTL 19 unknown - - - - 20120809 -9606 544417 COPD13 - - RGD:1331636 4 - Chronic obstructive pulmonary disease QTL 13 unknown - - - - 20120809 -9606 544418 COPD2 - - RGD:1331637 8 - Chronic obstructive pulmonary disease QTL 2 unknown - - - - 20120809 -9606 544419 COPD14 - - RGD:1331638 3 - Chronic obstructive pulmonary disease QTL 14 unknown - - - - 20120809 -9606 544420 COPD3 - - RGD:1331639 19 - Chronic obstructive pulmonary disease QTL 3 unknown - - - - 20120809 -9606 544421 COPD11 - - RGD:1331640 1 - Chronic obstructive pulmonary disease QTL 11 unknown - - - - 20120809 -9606 544422 COPD25 - - RGD:1331641 6 - Chronic obstructive pulmonary disease QTL 25 unknown - - - - 20120809 -9606 544423 AASTH6 - - RGD:1331642 12 - Allergic/atopic asthma related QTL 6 unknown - - - - 20120809 -9606 544424 COPD16 - - RGD:1331643 3 - Chronic obstructive pulmonary disease QTL 16 unknown - - - - 20120809 -9606 544425 AASTH7 - - RGD:1331644 12 - Allergic/atopic asthma related QTL 7 unknown - - - - 20120809 -9606 544426 COPD18 - - RGD:1331645 1 - Chronic obstructive pulmonary disease QTL 18 unknown - - - - 20120809 -9606 544427 COPD21 - - RGD:1331646 12 - Chronic obstructive pulmonary disease QTL 21 unknown - - - - 20120809 -9606 544428 COPD4 - - RGD:1331647 22 - Chronic obstructive pulmonary disease QTL 4 unknown - - - - 20120809 -9606 544429 COPD8 - - RGD:1331648 8 - Chronic obstructive pulmonary disease QTL 8 unknown - - - - 20120809 -9606 544430 COPD22 - - RGD:1331649 17 - Chronic obstructive pulmonary disease QTL 22 unknown - - - - 20120809 -9606 544431 COPD15 - - RGD:1331650 4 - Chronic obstructive pulmonary disease QTL 15 unknown - - - - 20120809 -9606 544432 COPD12 - - RGD:1331651 17 - Chronic obstructive pulmonary disease QTL 12 unknown - - - - 20120809 -9606 544433 COPD17 - - RGD:1331652 1 - Chronic obstructive pulmonary disease QTL 17 unknown - - - - 20120809 -9606 544434 AASTH5 - - RGD:1331653 7 - Allergic/atopic asthma related QTL 5 unknown - - - - 20120809 -9606 544435 COPD28 - - RGD:1331654 18 - Chronic obstructive pulmonary disease QTL 28 unknown - - - - 20120809 -9606 544436 COPD20 - - RGD:1331655 11 - Chronic obstructive pulmonary disease QTL 20 unknown - - - - 20120809 -9606 544437 COPD26 - - RGD:1331656 21 - Chronic obstructive pulmonary disease QTL 26 unknown - - - - 20120809 -9606 544438 COPD9 - - RGD:1331657 19 - Chronic obstructive pulmonary disease QTL 9 unknown - - - - 20120809 -9606 544439 COPD27 - - RGD:1331658 18 - Chronic obstructive pulmonary disease QTL 27 unknown - - - - 20120809 -9606 544440 AASTH4 - - RGD:1331659 5 - Allergic/atopic asthma related QTL 4 unknown - - - - 20120809 -9606 544441 AASTH3 - - RGD:1331660 5 - Allergic/atopic asthma related QTL 3 unknown - - - - 20120809 -9606 544442 COPD10 - - RGD:1331661 2 - Chronic obstructive pulmonary disease QTL 10 unknown - - - - 20120809 -9606 544443 COPD29 - - RGD:1331662 4 - Chronic obstructive pulmonary disease QTL 29 unknown - - - - 20120809 -9606 544444 COPD1 - - RGD:1331663 12 - Chronic obstructive pulmonary disease QTL 1 unknown - - - - 20121018 -9606 544445 COPD6 - - RGD:1331664 8 - Chronic obstructive pulmonary disease QTL 6 unknown - - - - 20120809 -9606 544446 AASTH2 - - RGD:1331665 5 - Allergic/atopic asthma related QTL 2 unknown - - - - 20120809 -9606 544447 COPD5 - - RGD:1331666 19 - Chronic obstructive pulmonary disease QTL 5 unknown - - - - 20120809 -9606 544448 COPD24 - - RGD:1331667 4 - Chronic obstructive pulmonary disease QTL 24 unknown - - - - 20120809 -9606 544560 AASTH30 - - RGD:1357288 2 - Allergic/atopic asthma related QTL 30 unknown - - - - 20120809 -9606 544561 AASTH31 - - RGD:1357289 11 - Allergic/atopic asthma related QTL 31 unknown - - - - 20120809 -9606 544562 AASTH52 - - RGD:1357290 21 - Allergic/atopic asthma related QTL 52 unknown - - - - 20120809 -9606 544563 AASTH48 - - RGD:1357291 9 - Allergic/atopic asthma related QTL 48 unknown - - - - 20120809 -9606 544564 AASTH34 - - RGD:1357292 6 - Allergic/atopic asthma related QTL 34 unknown - - - - 20120809 -9606 544565 AASTH20 - - RGD:1357293 12 - Allergic/atopic asthma related QTL 20 unknown - - - - 20120809 -9606 544566 AASTH40 - - RGD:1357294 5 - Allergic/atopic asthma related QTL 40 unknown - - - - 20120809 -9606 544567 AASTH14 - - RGD:1357295 13 - Allergic/atopic asthma related QTL 14 unknown - - - - 20120809 -9606 544568 AASTH9 - - RGD:1357296 1 - Allergic/atopic asthma related QTL 9 unknown - - - - 20120809 -9606 544569 AASTH21 - - RGD:1357297 11 - Allergic/atopic asthma related QTL 21 unknown - - - - 20120809 -9606 544570 AASTH25 - - RGD:1357298 20 - Allergic/atopic asthma related QTL 25 unknown - - - - 20120809 -9606 544571 AASTH47 - - RGD:1357299 9 - Allergic/atopic asthma related QTL 47 unknown - - - - 20120809 -9606 544572 AASTH39 - - RGD:1357300 20 - Allergic/atopic asthma related QTL 39 unknown - - - - 20120809 -9606 544573 AASTH17 - - RGD:1357301 5 - Allergic/atopic asthma related QTL 17 unknown - - - - 20120809 -9606 544574 AASTH35 - - RGD:1357302 7 - Allergic/atopic asthma related QTL 35 unknown - - - - 20120809 -9606 544575 AASTH38 - - RGD:1357303 6 - Allergic/atopic asthma related QTL 38 unknown - - - - 20120809 -9606 544576 AASTH26 - - RGD:1357304 1 - Allergic/atopic asthma related QTL 25 unknown - - - - 20120809 -9606 544577 AASTH49 - - RGD:1357305 12 - Allergic/atopic asthma related QTL 49 unknown - - - - 20120809 -9606 544578 AASTH50 - - RGD:1357306 13 - Allergic/atopic asthma related QTL 50 unknown - - - - 20120809 -9606 544579 AASTH12 - - RGD:1357307 9 - Allergic/atopic asthma related QTL 12 unknown - - - - 20120809 -9606 544580 AASTH23 - - RGD:1357308 8 - Allergic/atopic asthma related QTL 23 unknown - - - - 20120809 -9606 544581 AASTH55 - - RGD:1357309 5 - Allergic/atopic asthma related QTL 5 unknown - - - - 20120809 -9606 544582 AASTH42 - - RGD:1357310 2 - Allergic/atopic asthma related QTL 42 unknown - - - - 20120809 -9606 544583 AASTH13 - - RGD:1357311 17 - Allergic/atopic asthma related QTL 13 unknown - - - - 20120809 -9606 544584 AASTH11 - - RGD:1357312 6 - Allergic/atopic asthma related QTL 11 unknown - - - - 20120809 -9606 544585 AASTH36 - - RGD:1357313 13 - Allergic/atopic asthma related QTL 36 unknown - - - - 20120809 -9606 544586 AASTH54 - - RGD:1357314 5 - Allergic/atopic asthma related QTL 54 unknown - - - - 20120809 -9606 544587 AASTH51 - - RGD:1357315 19 - Allergic/atopic asthma related QTL 51 unknown - - - - 20120809 -9606 544588 AASTH33 - - RGD:1357316 13 - Allergic/atopic asthma related QTL 33 unknown - - - - 20120809 -9606 544589 AASTH19 - - RGD:1357317 5 - Allergic/atopic asthma related QTL 19 unknown - - - - 20120809 -9606 544590 AASTH43 - - RGD:1357318 3 - Allergic/atopic asthma related QTL 43 unknown - - - - 20120809 -9606 544591 AASTH8 - - RGD:1357319 1 - Allergic/atopic asthma related QTL 8 unknown - - - - 20120809 -9606 544592 AASTH27 - - RGD:1357320 18 - Allergic/atopic asthma related QTL 27 unknown - - - - 20121018 -9606 544593 AASTH53 - - RGD:1357321 21 - Allergic/atopic asthma related QTL 53 unknown - - - - 20120809 -9606 544594 AASTH44 - - RGD:1357322 3 - Allergic/atopic asthma related QTL 44 unknown - - - - 20120809 -9606 544595 AASTH18 - - RGD:1357323 14 - Allergic/atopic asthma related QTL 18 unknown - - - - 20120809 -9606 544596 AASTH16 - - RGD:1357324 13 - Allergic/atopic asthma related QTL 16 unknown - - - - 20120809 -9606 544597 AASTH15 - - RGD:1357325 13 - Allergic/atopic asthma related QTL 15 unknown - - - - 20120809 -9606 544598 AASTH37 - - RGD:1357326 14 - Allergic/atopic asthma related QTL 37 unknown - - - - 20120809 -9606 544599 AASTH45 - - RGD:1357327 3 - Allergic/atopic asthma related QTL 45 unknown - - - - 20120809 -9606 544600 AASTH24 - - RGD:1357328 19 - Allergic/atopic asthma related QTL 24 unknown - - - - 20120809 -9606 544601 AASTH46 - - RGD:1357329 5 - Allergic/atopic asthma related QTL 46 unknown - - - - 20120809 -9606 544602 AASTH22 - - RGD:1357330 6 - Allergic/atopic asthma related QTL 22 unknown - - - - 20120809 -9606 544603 AASTH10 - - RGD:1357331 5 - Allergic/atopic asthma related QTL 10 unknown - - - - 20120809 -9606 544614 BW59 - - RGD:1357356 8 - Body weight QTL 59 unknown - - - - 20120809 -9606 544615 BW56 - - RGD:1357357 17 - Body weight QTL 56 unknown - - - - 20120809 -9606 544616 COHEN2 - - RGD:1357358 8 - Cohen syndrome QTL 2 unknown - - - - 20120809 -9606 544617 BW35 - - RGD:1357359 7 - Body weight QTL 35 unknown - - - - 20120809 -9606 544618 COHEN1 - - RGD:1357360 8 - Cohen syndrome QTL 1 unknown - - - - 20120809 -9606 544619 BW37 - - RGD:1357361 12 - Body weight QTL 37 unknown - - - - 20120809 -9606 544620 BW54 - - RGD:1357362 6 - Body weight QTL 54 unknown - - - - 20120809 -9606 544621 BW55 - - RGD:1357363 17 - Body weight QTL 55 unknown - - - - 20120809 -9606 544622 BW36 - - RGD:1357364 11 - Body weight QTL 36 unknown - - - - 20120809 -9606 544623 HRTRT1 - - RGD:1357365 4 - Heart rate QTL 1 unknown - - - - 20120809 -9606 544624 BW69 - - RGD:1357366 8 - Body weight QTL 69 unknown - - - - 20120809 -9606 544625 BW53 - - RGD:1357367 2 - Body weight QTL 53 unknown - - - - 20120809 -9606 544626 BW52 - - RGD:1357368 8 - Body weight QTL 52 unknown - - - - 20120809 -9606 544627 BW72 - - RGD:1357378 5 - Body weight QTL 72 unknown - - - - 20120809 -9606 544628 BW70 - - RGD:1357379 11 - Body weight QTL 70 unknown - - - - 20120809 -9606 544629 BW64 - - RGD:1357380 11 - Body weight QTL 64 unknown - - - - 20120809 -9606 544630 BW57 - - RGD:1357381 1 - Body weight QTL 57 unknown - - - - 20120809 -9606 544631 SLEP2 - - RGD:1357382 2 - Serum leptin concentration QTL 2 unknown - - - - 20120809 -9606 544632 BW61 - - RGD:1357383 5 - Body weight QTL 61 unknown - - - - 20120809 -9606 544633 BW71 - - RGD:1357384 1 - Body weight QTL 71 unknown - - - - 20120809 -9606 544634 BW60 - - RGD:1357385 1 - Body weight QTL 60 unknown - - - - 20120809 -9606 544635 BW66 - - RGD:1357386 14 - Body weight QTL 66 unknown - - - - 20120809 -9606 544636 BW58 - - RGD:1357387 12 - Body weight QTL 58 unknown - - - - 20120809 -9606 544637 BW62 - - RGD:1357388 9 - Body weight QTL 62 unknown - - - - 20120809 -9606 544638 BW68 - - RGD:1357389 7 - Body weight QTL 68 unknown - - - - 20120809 -9606 544639 BW67 - - RGD:1357390 18 - Body weight QTL 67 unknown - - - - 20120809 -9606 544640 BW63 - - RGD:1357391 10 - Body weight QTL 63 unknown - - - - 20120809 -9606 544650 SLEP1 - - RGD:1357406 8 - Serum leptin concentration QTL 1 unknown - - - - 20120809 -9606 548313 SSX4B - CT5.4 HGNC:16880|Ensembl:ENSG00000198946|Vega:OTTHUMG00000021497 X Xp11.23 synovial sarcoma, X breakpoint 4B protein-coding SSX4B synovial sarcoma, X breakpoint 4B O OTTHUMT00000056510|cancer/testis antigen 5.4|protein SSX4 20121209 -9606 548321 FAM27A - FAM27A1|bA7G23.5 HGNC:19729 9 9q12 family with sequence similarity 27, member A miscRNA FAM27A family with sequence similarity 27, member A O - 20121230 -9606 548324 C9orf133 RP11-205M20.3 - HGNC:31420 9 - chromosome 9 open reading frame 133 unknown C9orf133 chromosome 9 open reading frame 133 O - 20121230 -9606 548327 MRX85 - - HGNC:25170 X Xp21 mental retardation, X-linked 85 unknown MRX85 mental retardation, X-linked 85 O - 20110215 -9606 548593 SLX1A - GIYD1 HGNC:20922|Ensembl:ENSG00000132207|HPRD:18681|Vega:OTTHUMG00000176859 16 16p11.2 SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae) protein-coding SLX1A SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae) O GIY-YIG domain-containing protein 1|structure-specific endonuclease subunit SLX1 20121230 -9606 548594 KIR3DP1 - CD158c|KIR2DS6|KIR3DS2P|KIR48|KIRX HGNC:16343|MIM:610604|HPRD:18682 19 19q13.42 killer cell immunoglobulin-like receptor, three domains, pseudogene 1 pseudo KIR3DP1 killer cell immunoglobulin-like receptor, three domains, pseudogene 1 O - 20121230 -9606 548596 CKMT1A - CKMT1 HGNC:31736|MIM:613415|Ensembl:ENSG00000223572|HPRD:18683|Vega:OTTHUMG00000059898 15 15q15 creatine kinase, mitochondrial 1A protein-coding CKMT1A creatine kinase, mitochondrial 1A O U-MtCK|acidic-type mitochondrial creatine kinase|creatine kinase U-type, mitochondrial|creatine kinase, mitochondrial 1 (ubiquitous)|mia-CK|ubiquitous mitochondrial creatine kinase 20121230 -9606 548599 PHBP7 - - HGNC:39286 9 9q21 prohibitin pseudogene 7 pseudo PHBP7 prohibitin pseudogene 7 O - 20121230 -9606 548637 DUTP1 - DUTL HGNC:31956 3 3q21.2 deoxyuridine triphosphatase pseudogene 1 pseudo DUTP1 deoxyuridine triphosphatase pseudogene 1 O - 20121230 -9606 548644 POLR2J3 - POLR2J2|RPB11b1|RPB11b2 HGNC:33853|Ensembl:ENSG00000168255|HPRD:18684|Vega:OTTHUMG00000150384 7 7q22.1 polymerase (RNA) II (DNA directed) polypeptide J3 protein-coding POLR2J3 polymerase (RNA) II (DNA directed) polypeptide J3 O DNA-directed RNA polymerase II subunit 11|DNA-directed RNA polymerase II subunit J3|DNA-directed RNA polymerase II subunit RPB11-b2|RNA polymerase II subunit B11-b2 20121230 -9606 548645 DNAJC25 - bA16L21.2.1 HGNC:34187|Ensembl:ENSG00000059769|HPRD:18685|Vega:OTTHUMG00000020491 9 9q31.3 DnaJ (Hsp40) homolog, subfamily C , member 25 protein-coding DNAJC25 DnaJ (Hsp40) homolog, subfamily C , member 25 O DnaJ-like protein|dnaJ homolog subfamily C member 25 20121230 -9606 550112 LOC550112 - - - 4 4q13.2 uncharacterized LOC550112 miscRNA - - - - 20121230 -9606 550113 LOC550113 - - - 4 4q13.2 uncharacterized LOC550113 miscRNA - - - - 20121230 -9606 550623 SPG26 - - HGNC:22494|MIM:609195 12 12p11.1-q14 spastic paraplegia 26 unknown SPG26 spastic paraplegia 26 O - 20120622 -9606 550624 KTCN4 - - MIM:609271 2 2p24 Keratoconus 4 unknown - - - - 20120622 -9606 550625 ANIC - - MIM:107200 18 18p11.23-q12.2 Anosmia, isolated congenital unknown - - - - 20120622 -9606 550626 FHASD - - MIM:609218 16 16q23.2-q24.2 Foveal hypoplasia and anterior segment dysgenesis unknown - - - - 20120622 -9606 550631 CCDC157 - - HGNC:33854|Ensembl:ENSG00000187860|HPRD:18686|Vega:OTTHUMG00000151007 22 22q12.2 coiled-coil domain containing 157 protein-coding CCDC157 coiled-coil domain containing 157 O coiled-coil domain-containing protein 157 20121230 -9606 550641 TELM - - MIM:609113 14 14q23.2 telomere length, mean leukocyte unknown - - - - 20120622 -9606 550643 LOC550643 - - - X Xp11.1 uncharacterized LOC550643 miscRNA - - - - 20121230 -9606 550644 LOC550644 - - - 2 2q11.2 structural maintenance of chromosomes 3 pseudogene pseudo - - - - 20121230 -9606 552852 NCRNA00249 - C8orf23 - 8 8q21.11 non-protein coding RNA 249 miscRNA - - - - 20120508 -9606 552853 NCRNA00250 - C8orf24 - 8 8q24.22 non-protein coding RNA 250 miscRNA - - - - 20120508 -9606 552859 LINC00251 - C8orf25|NCRNA00251 HGNC:31950 8 8q13.1 long intergenic non-protein coding RNA 251 miscRNA LINC00251 long intergenic non-protein coding RNA 251 O - 20121230 -9606 552860 SAMD12-AS1 - C8orf26|NCRNA00252 HGNC:30937 8 8q24.12 SAMD12 antisense RNA 1 miscRNA SAMD12-AS1 SAMD12 antisense RNA 1 O - 20121230 -9606 552867 FAM67A - - HGNC:23819 8 8p23.1 family with sequence similarity 67, member A unknown FAM67A family with sequence similarity 67, member A O - 20121201 -9606 552868 FAM67B - - HGNC:24907 8 8p23.1 family with sequence similarity 67, member B unknown FAM67B family with sequence similarity 67, member B O - 20121201 -9606 552879 VENTXP6 - - HGNC:32216 8 8q21.11 VENT homeobox pseudogene 6 pseudo VENTXP6 VENT homeobox pseudogene 6 O - 20121230 -9606 552889 ATXN7L3B - - HGNC:37931|Ensembl:ENSG00000253719|Vega:OTTHUMG00000163936 12 12q21 ataxin 7-like 3B protein-coding ATXN7L3B ataxin 7-like 3B O putative ataxin-7-like protein 3B 20121230 -9606 552891 DNAJC25-GNG10 - - HGNC:37501|Ensembl:ENSG00000059769|Ensembl:ENSG00000244115|HPRD:10374|Vega:OTTHUMG00000150303 9 9q31.3 DNAJC25-GNG10 readthrough protein-coding DNAJC25-GNG10 DNAJC25-GNG10 readthrough O DNAJC25-GNG10 protein|DNAJC25-GNG10 readthrough transcript 20121230 -9606 552900 BOLA2 - BOLA2A|My016 HGNC:29488|MIM:613182|Ensembl:ENSG00000183336|Vega:OTTHUMG00000176757 16 16p11.2 bolA homolog 2 (E. coli) protein-coding BOLA2 bolA homolog 2 (E. coli) O BolA-like protein 2|BolA-like protein 2 member A|bolA-like 2 20121230 -9606 553103 LOC553103 - - - 5 - uncharacterized LOC553103 miscRNA - - - - 20121230 -9606 553112 FERP1 - FERP|FERps HGNC:26443 X Xq25 fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) pseudogene 1 pseudo FERP1 fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) pseudogene 1 O - 20121230 -9606 553115 PEF1 UNQ1845/PRO3573 ABP32|PEF1A HGNC:30009|MIM:610033|Ensembl:ENSG00000162517|HPRD:10143|Vega:OTTHUMG00000003877 1 1p34 penta-EF-hand domain containing 1 protein-coding PEF1 penta-EF-hand domain containing 1 O PEF protein with a long N-terminal hydrophobic domain|peflin|penta-EF hand domain containing 1 20121230 -9606 553117 RPL39P5 - RPL39_7_406 HGNC:26015 3 3q22.1 ribosomal protein L39 pseudogene 5 pseudo RPL39P5 ribosomal protein L39 pseudogene 5 O - 20121230 -9606 553118 STK33P1 RP11-7N10.1 STK33P|STK33ps HGNC:26871 9 9q21.33 serine/threonine kinase 33 pseudogene 1 pseudo STK33P1 serine/threonine kinase 33 pseudogene 1 O - 20121230 -9606 553121 TLK2P2 RP11-162G10.1 TLK2ps2 HGNC:22227 10 10p11.1 tousled-like kinase 2 pseudogene 2 pseudo TLK2P2 tousled-like kinase 2 pseudogene 2 O - 20121230 -9606 553128 KIR2DL5B - KIR2DL5|KIR2DL5.2|KIR2DLX HGNC:16346|HPRD:18687 19 19p13.3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5B protein-coding KIR2DL5B killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5B O CD158 antigen-like family member F2|killer cell Ig-like receptor|killer cell immunoglobulin-like receptor 2DL5B|killer cell immunoglobulin-like receptor 2DLX 20121104 -9606 553137 LOC553137 - - - 6 6q21 uncharacterized LOC553137 unknown - - - - 20120511 -9606 553139 LOC553139 - - - 1 1p31.1 PAI-1 mRNA binding protein pseudogene pseudo - - - - 20121230 -9606 553140 SLEP3 - - RGD:1358215 17 - Serum leptin concentration QTL 3 unknown - - - - 20120809 -9606 553141 BW88 - - RGD:1358213 3 - Body weight QTL 88 unknown - - - - 20120809 -9606 553142 AASTH29 - - RGD:1358214 4 - Allergic/Atopic asthma related QTL 29 unknown - - - - 20120809 -9606 553143 BW65 - - RGD:1358216 12 - Body weight QTL 65 unknown - - - - 20120809 -9606 553144 AASTH56 - - RGD:1358217 10 - Allergic/Atopic asthma related QTL 56 unknown - - - - 20120809 -9606 553145 AASTH32 - - RGD:1358218 10 - Allergic/Atopic asthma related QTL 32 unknown - - - - 20120809 -9606 553146 AASTH41 - - RGD:1358219 5 - Allergic/Atopic asthma related QTL 41 unknown - - - - 20120809 -9606 553147 AASTH28 - - RGD:1358220 - - Allergic/Atopic asthma related QTL 28 unknown - - - - 20120809 -9606 553148 SERBP1P3 - - HGNC:44630 3 3p21.1 SERPINE1 mRNA binding protein 1 pseudogene 3 pseudo SERBP1P3 SERPINE1 mRNA binding protein 1 pseudogene 3 O - 20121230 -9606 553158 PRR5-ARHGAP8 - - HGNC:34512|Ensembl:ENSG00000241484|Ensembl:ENSG00000248405|HPRD:18688|Vega:OTTHUMG00000160954 22 22q13 PRR5-ARHGAP8 readthrough protein-coding PRR5-ARHGAP8 PRR5-ARHGAP8 readthrough O PRR5-ARHGAP8 fusion|PRR5-ARHGAP8 fusion protein 20121230 -9606 553190 MYP7 - - HGNC:35435|MIM:609256 11 11p13 myopia 7 unknown MYP7 myopia 7 O - 20120622 -9606 553192 MYP8 - - HGNC:35436|MIM:609257 3 3q26 myopia 8 unknown MYP8 myopia 8 O - 20120622 -9606 553194 MYP9 - - HGNC:35437|MIM:609258 4 4q12 myopia 9 unknown MYP9 myopia 9 O - 20120622 -9606 553195 MYP10 - - HGNC:35438|MIM:609259 8 8p23 myopia 10 unknown MYP10 myopia 10 O - 20120622 -9606 553820 EEF1A1P31 - - HGNC:37908 X Xq28 eukaryotic translation elongation factor 1 alpha 1 pseudogene 31 pseudo EEF1A1P31 eukaryotic translation elongation factor 1 alpha 1 pseudogene 31 O - 20121230 -9606 553939 LOC553939 - - - X Xq28 trimethyllysine hydroxylase, epsilon pseudogene pseudo - - - - 20121230 -9606 553989 LFS3 - - MIM:609266 1 1q23 Li-Fraumeni syndrome 3 unknown - - - - 20120622 -9606 553991 LGMD1G - - HGNC:32230|MIM:609115 4 4q21 limb girdle muscular dystrophy 1G (autosomal dominant) unknown LGMD1G limb girdle muscular dystrophy 1G (autosomal dominant) O - 20120622 -9606 553992 MGR7 - - MIM:609179 15 15q11.2-q12 Migraine with aura, susceptibility to, 7 unknown - - - - 20120622 -9606 554045 DUX4L9 - DUX4C HGNC:33855|HPRD:18689 4 4q35.2 double homeobox 4 like 9 unknown DUX4L9 double homeobox 4 like 9 O - 20121230 -9606 554049 C1DP1 - bA195O1.1 HGNC:31465 10 10p11.22 C1D nuclear receptor corepressor pseudogene 1 pseudo C1DP1 C1D nuclear receptor corepressor pseudogene 1 O - 20121230 -9606 554174 LOC554174 - - - 22 22q13.31 uncharacterized LOC554174 unknown - - - - 20120710 -9606 554175 DNM1P33 - DNM1DN7-2|DNM1DN7@ HGNC:35180 15 15q23 DNM1 pseudogene 33 pseudo DNM1P33 DNM1 pseudogene 33 O - 20121230 -9606 554188 FCMTE2 - ADCME|BAFME2|FAME|FAME2 HGNC:37159|MIM:607876 2 2p11.1-q12.2 familial cortical myoclonic tremor with epilepsy 2 unknown FCMTE2 familial cortical myoclonic tremor with epilepsy 2 O - 20120622 -9606 554201 CCDC148-AS1 - - HGNC:44134 2 2q24.1 CCDC148 antisense RNA 1 miscRNA CCDC148-AS1 CCDC148 antisense RNA 1 O - 20121230 -9606 554202 MIR31HG - - HGNC:37187 9 9p21.3 MIR31 host gene (non-protein coding) miscRNA MIR31HG MIR31 host gene (non-protein coding) O - 20121230 -9606 554203 JPX RP13-36G14.1 ENOX|LINC00183|NCRNA00183 HGNC:37191|MIM:300832 X Xq13.2 JPX transcript, XIST activator (non-protein coding) miscRNA JPX JPX transcript, XIST activator (non-protein coding) O - 20121230 -9606 554206 LOC554206 - - - 16 16p12.1 leucine carboxyl methyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 554207 LOC554207 - - - 14 14q11.2 uncharacterized LOC554207 unknown - - - - 20120710 -9606 554210 MIR429 - MIRN429|hsa-mir-429 HGNC:13784|MIM:612094|miRBase:MI0001641 1 1p36.33 microRNA 429 miscRNA MIR429 microRNA 429 O - 20121230 -9606 554212 MIR448 - MIRN448|hsa-mir-448|miRNA448 HGNC:26069|MIM:300686|miRBase:MI0001637 X Xq23 microRNA 448 miscRNA MIR448 microRNA 448 O - 20121230 -9606 554213 MIR449A - MIRN449|MIRN449A|hsa-mir-449 HGNC:27645|MIM:613131|miRBase:MI0001648 5 5q11.2 microRNA 449a miscRNA MIR449A microRNA 449a O - 20121230 -9606 554214 MIR450A1 - MIRN450|MIRN450-1|MIRN450A-1|MIRN450A1|hsa-mir-450 HGNC:28008|miRBase:MI0001652 X Xq26.3 microRNA 450a-1 miscRNA MIR450A1 microRNA 450a-1 O - 20121230 -9606 554223 LOC554223 - - - 6 6p21.3 histocompatibility antigen-related protein-coding - - - - 20121230 -9606 554224 PPIP5K1P1 - HISPPD2B|HISPPD2BP HGNC:32373 15 15q15.3 diphosphoinositol pentakisphosphate kinase 1 pseudogene 1 pseudo PPIP5K1P1 diphosphoinositol pentakisphosphate kinase 1 pseudogene 1 O - 20121230 -9606 554225 STRCP1 - STRCP HGNC:33915 15 15q15.3 stereocilin pseudogene 1 pseudo STRCP1 stereocilin pseudogene 1 O - 20121230 -9606 554226 ANKRD30BL - ANKRD30BP3|NCRNA00164 HGNC:35167 2 2q21.2 ankyrin repeat domain 30B-like pseudo ANKRD30BL ankyrin repeat domain 30B-like O - 20121230 -9606 554234 RPL36AP40 - RPL36A_15_1127 HGNC:36300 11 11p14.3 ribosomal protein L36a pseudogene 40 pseudo RPL36AP40 ribosomal protein L36a pseudogene 40 O - 20121230 -9606 554235 ASPDH - - HGNC:33856|Ensembl:ENSG00000204653|HPRD:18692 19 19q13.33 aspartate dehydrogenase domain containing protein-coding ASPDH aspartate dehydrogenase domain containing O aspartate dehydrogenase domain-containing protein|putative L-aspartate dehydrogenase 20121230 -9606 554236 DPY19L2P1 - - HGNC:22305 7 7p14.2 dpy-19-like 2 pseudogene 1 (C. elegans) pseudo DPY19L2P1 dpy-19-like 2 pseudogene 1 (C. elegans) O - 20121230 -9606 554247 LOC554247 - - - 18 18q23 uncharacterized LOC554247 unknown - - - - 20111025 -9606 554249 LOC554249 - - - 9 9q12 uncharacterized LOC554249 unknown - - - - 20121102 -9606 554250 GDF5OS RP3-477O4.13-001 - HGNC:33435 20 20q11.2 growth differentiation factor 5 opposite strand unknown GDF5OS growth differentiation factor 5 opposite strand O - 20121230 -9606 554251 FBXO48 - - HGNC:33857|Ensembl:ENSG00000204923|HPRD:18694|Vega:OTTHUMG00000152585 2 2p13.3 F-box protein 48 protein-coding FBXO48 F-box protein 48 O F-box only protein 48 20121230 -9606 554279 SMIM16 - C1orf98 HGNC:21901 1 1q32.1 small integral membrane protein 16 miscRNA SMIM16 small integral membrane protein 16 O - 20121230 -9606 554282 FAM72C RP5-998N21.9 - HGNC:30602 1 1q21.2 family with sequence similarity 72, member C protein-coding FAM72C family with sequence similarity 72, member C O - 20121230 -9606 554300 KIR2DP1 - KIR15|KIR2DL6|KIRY|KIRZ HGNC:16344 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, pseudogene 1 pseudo KIR2DP1 killer cell immunoglobulin-like receptor, two domains, pseudogene 1 O - 20121230 -9606 554313 HIST2H4B - H4/o HGNC:29607 1 1q21 histone cluster 2, H4b protein-coding HIST2H4B histone cluster 2, H4b O histone 2, H4b|histone H4 20121230 -9606 554314 AUTS6 - - MIM:609378 17 17q21 Autism, susceptibility to, 6 unknown - - - - 20120622 -9606 554315 BMND5 - - MIM:609354 11 11q23 Bone mineral density variation QTL 5 unknown - - - - 20120622 -9606 554316 BMND4 - - MIM:300536 X Xq27 Bone mineral density variation QTL 4 unknown - - - - 20120622 -9606 554354 LARP4P - - HGNC:21438 15 15q14 La ribonucleoprotein domain family, member 4 pseudogene pseudo LARP4P La ribonucleoprotein domain family, member 4 pseudogene O - 20121230 -9606 572558 PGM5-AS1 - - HGNC:44181 9 9q13 PGM5 antisense RNA 1 miscRNA PGM5-AS1 PGM5 antisense RNA 1 O - 20121230 -9606 573971 DHFRP1 - - HGNC:2862 18 18q11.2 dihydrofolate reductase pseudogene 1 pseudo DHFRP1 dihydrofolate reductase pseudogene 1 O - 20121230 -9606 574013 SMAN1 - - HGNC:20975 20 20q13.2-q13.3 survival of motor and autonomic neurons 1 unknown SMAN1 survival of motor and autonomic neurons 1 O - 20110215 -9606 574016 CLLU1OS - - HGNC:24070|Ensembl:ENSG00000205057|Vega:OTTHUMG00000161990 12 12q22 chronic lymphocytic leukemia up-regulated 1 opposite strand protein-coding CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand O chronic lymphocytic leukemia up-regulated 1 overlapping strand|putative chronic lymphocytic leukemia up-regulated protein 1 opposite strand transcript protein 20121230 -9606 574017 EKV3 - - HGNC:24106|MIM:609313 7 7q22 erythrokeratodermia variabilis 3 (Kamouraska type) unknown EKV3 erythrokeratodermia variabilis 3 (Kamouraska type) O - 20120622 -9606 574028 CLLU1 - - HGNC:29841|Ensembl:ENSG00000257127|Vega:OTTHUMG00000170103 12 12q22 chronic lymphocytic leukemia up-regulated 1 protein-coding CLLU1 chronic lymphocytic leukemia up-regulated 1 O chronic lymphocytic leukemia up-regulated protein 1 20121230 -9606 574029 DUSP5P1 RP4-621O15.1 DUSP5P|RP4-621O15.2 HGNC:32020 1 1q42.13 dual specificity phosphatase 5 pseudogene 1 pseudo DUSP5P1 dual specificity phosphatase 5 pseudogene 1 O - 20121230 -9606 574030 MIR362 - MIRN362|hsa-mir-362 HGNC:32022|miRBase:MI0000762 X Xp11.23 microRNA 362 miscRNA MIR362 microRNA 362 O - 20121230 -9606 574031 MIR363 - MIR-363|MIRN363|hsa-mir-363 HGNC:32023|miRBase:MI0000764 X Xq26.2 microRNA 363 miscRNA MIR363 microRNA 363 O - 20121230 -9606 574032 MIR20B - MIRN20B|hsa-mir-20b HGNC:32024|miRBase:MI0001519 X Xq26.2 microRNA 20b miscRNA MIR20B microRNA 20b O - 20121230 -9606 574033 MIR18B - MIRN18B|hsa-mir-18b HGNC:32025|miRBase:MI0001518 X Xq26.2 microRNA 18b miscRNA MIR18B microRNA 18b O - 20121230 -9606 574034 MIR433 - MIRN433|hsa-mir-433|miRNA433 HGNC:32026|MIM:611711|miRBase:MI0001723 14 14q32.2 microRNA 433 miscRNA MIR433 microRNA 433 O - 20121230 -9606 574036 SERTAD4-AS1 RP4-667H12.2 C1orf133 HGNC:32019 1 1q32.2 SERTAD4 antisense RNA 1 miscRNA SERTAD4-AS1 SERTAD4 antisense RNA 1 O - 20121230 -9606 574037 C1orf134 - - HGNC:32021 1 1p36.13 chromosome 1 open reading frame 134 protein-coding C1orf134 chromosome 1 open reading frame 134 O - 20121216 -9606 574038 MIR431 - MIRN431|hsa-mir-431|miRNA431 HGNC:32027|MIM:611708|miRBase:MI0001721 14 14q32.2 microRNA 431 miscRNA MIR431 microRNA 431 O - 20121230 -9606 574040 SNORA6 - ACA6 HGNC:32591 3 3p22.2 small nucleolar RNA, H/ACA box 6 snoRNA SNORA6 small nucleolar RNA, H/ACA box 6 O - 20121230 -9606 574042 SNORA10 - ACA10 HGNC:32598 16 16p13.3 small nucleolar RNA, H/ACA box 10 snoRNA SNORA10 small nucleolar RNA, H/ACA box 10 O - 20121230 -9606 574043 CDAGS - - MIM:603116 22 22q12-q13 Craniosynostosis, anal anomalies, and porokeratosis syndrome unknown - - - - 20120622 -9606 574044 EPRPDC - - MIM:608105 16 16p12-p11.2 Epilepsy, rolandic, with paroxysmal exercise-induced dystonia and writer's cramp unknown - - - - 20121018 -9606 574045 HNP1 - - MIM:608026 9 9q31-q32 Hypertensive nephropathy unknown - - - - 20120622 -9606 574047 MPDMRS - - MIM:300519 - - Martin-Probst deafness-mental retardation syndrome unknown - - - - 20121031 -9606 574048 OVCAS1 - - MIM:607893 3 3p25-p22 Ovarian cancer, epithelial, susceptibility to unknown - - - - 20120622 -9606 574049 TUKLS - - MIM:609428 21 21q22 Tukel syndrome unknown - - - - 20120622 -9606 574077 GLC1K - JOAG3 HGNC:21341|MIM:608696 20 20p12 glaucoma 1, open angle, K (juvenile-onset) unknown GLC1K glaucoma 1, open angle, K (juvenile-onset) O - 20120622 -9606 574078 GLC1J - JOAG2 HGNC:26986|MIM:608695 9 9q22 glaucoma 1, open angle, J (juvenile-onset) unknown GLC1J glaucoma 1, open angle, J (juvenile-onset) O - 20120622 -9606 574080 LOC574080 - - - 5 5q34 CDGSH iron sulfur domain 1 pseudogene pseudo - - - - 20121230 -9606 574406 C1orf138 RP11-54A4.4 - HGNC:32041 1 1q21.2 chromosome 1 open reading frame 138 unknown C1orf138 chromosome 1 open reading frame 138 O - 20121021 -9606 574407 C1orf145 RP11-520H14.6 - HGNC:32047 1 1q42.13 chromosome 1 open reading frame 145 miscRNA C1orf145 chromosome 1 open reading frame 145 O - 20121230 -9606 574408 MIR329-1 - MIRN329-1 HGNC:32050|miRBase:MI0001725 14 14q32.31 microRNA 329-1 miscRNA MIR329-1 microRNA 329-1 O - 20121230 -9606 574409 MIR329-2 - MIRN329-2 HGNC:32051|miRBase:MI0001726 14 14q32.31 microRNA 329-2 miscRNA MIR329-2 microRNA 329-2 O - 20121230 -9606 574410 MIR323B - MIR453|MIRN453|hsa-mir-453 HGNC:38349|miRBase:MI0014206 14 14q32.31 microRNA 323b miscRNA MIR323B microRNA 323b O - 20121230 -9606 574411 MIR451A - MIR451|MIRN451|hsa-mir-451|hsa-mir-451a HGNC:32053|MIM:612071|miRBase:MI0001729 17 17q11.2 microRNA 451a miscRNA MIR451A microRNA 451a O - 20121230 -9606 574412 MIR452 - MIRN452|hsa-mir-452 HGNC:32054|miRBase:MI0001733 X Xq28 microRNA 452 miscRNA MIR452 microRNA 452 O - 20121230 -9606 574413 MIR409 - MIRN409|hsa-mir-409 HGNC:32055|MIM:614057|miRBase:MI0001735 14 14q32.31 microRNA 409 miscRNA MIR409 microRNA 409 O - 20121230 -9606 574414 PRR9 - - HGNC:32057|Ensembl:ENSG00000203783|Vega:OTTHUMG00000013936 1 1q21.3 proline rich 9 protein-coding PRR9 proline rich 9 O proline-rich protein 9 20121230 -9606 574431 C1orf147 - - HGNC:32061 1 1q32.1 chromosome 1 open reading frame 147 unknown C1orf147 chromosome 1 open reading frame 147 O - 20121230 -9606 574432 C1orf148 RP11-520H14.4 - HGNC:32062 1 1q42.13 chromosome 1 open reading frame 148 unknown C1orf148 chromosome 1 open reading frame 148 O - 20121230 -9606 574433 MIR412 - MIRN412|hsa-mir-412 HGNC:32064|miRBase:MI0002464 14 14q32.31 microRNA 412 miscRNA MIR412 microRNA 412 O - 20121230 -9606 574434 MIR410 - MIRN410|hsa-mir-410 HGNC:32065|miRBase:MI0002465 14 14q32.31 microRNA 410 miscRNA MIR410 microRNA 410 O - 20121230 -9606 574435 MIR376B - MIRN376B HGNC:32066|MIM:610961|miRBase:MI0002466 14 14q32.31 microRNA 376b miscRNA MIR376B microRNA 376b O - 20121230 -9606 574436 MIR485 - MIRN485|hsa-mir-485 HGNC:32067|miRBase:MI0002469 14 14q32.31 microRNA 485 miscRNA MIR485 microRNA 485 O - 20121230 -9606 574441 MIR488 - MIRN488|hsa-mir-488 HGNC:32073|miRBase:MI0003123 1 1q25.2 microRNA 488 miscRNA MIR488 microRNA 488 O - 20121230 -9606 574442 MIR489 - MIRN489|hsa-mir-489 HGNC:32074|MIM:614523|miRBase:MI0003124 7 7q21.3 microRNA 489 miscRNA MIR489 microRNA 489 O - 20121230 -9606 574443 MIR490 - MIRN490|hsa-mir-490|miR-490 HGNC:32075|miRBase:MI0003125 7 7q33 microRNA 490 miscRNA MIR490 microRNA 490 O - 20121230 -9606 574444 MIR491 - MIRN491|hsa-mir-491 HGNC:32076|miRBase:MI0003126 9 9p21.3 microRNA 491 miscRNA MIR491 microRNA 491 O - 20121230 -9606 574445 MIR511-1 - MIRN511-1 HGNC:32077|miRBase:MI0003127 10 10p12.33 microRNA 511-1 miscRNA MIR511-1 microRNA 511-1 O - 20121230 -9606 574446 MIR511-2 - MIRN511-2 HGNC:32078|miRBase:MI0003128 10 10p12.33 microRNA 511-2 miscRNA MIR511-2 microRNA 511-2 O - 20121230 -9606 574447 MIR146B - MIRN146B|miRNA146B HGNC:32079|MIM:610567|miRBase:MI0003129 10 10q24.32 microRNA 146b miscRNA MIR146B microRNA 146b O - 20121230 -9606 574448 MIR202 - MIRN202|hsa-mir-202 HGNC:32080|miRBase:MI0003130 10 10q26.3 microRNA 202 miscRNA MIR202 microRNA 202 O - 20121230 -9606 574449 MIR492 - MIRN492|hsa-mir-492 HGNC:32081|MIM:614384|miRBase:MI0003131 12 12q22 microRNA 492 miscRNA MIR492 microRNA 492 O - 20121230 -9606 574450 MIR493 - MIRN493|hsa-mir-493 HGNC:32082|miRBase:MI0003132 14 14q32.2 microRNA 493 miscRNA MIR493 microRNA 493 O - 20121230 -9606 574451 MIR432 - MIRN432|hsa-mir-432 HGNC:32083|miRBase:MI0003133 14 14q32.2 microRNA 432 miscRNA MIR432 microRNA 432 O - 20121230 -9606 574452 MIR494 - MIRN494|hsa-mir-494 HGNC:32084|miRBase:MI0003134 14 14q32.31 microRNA 494 miscRNA MIR494 microRNA 494 O - 20121230 -9606 574453 MIR495 - MIRN495|hsa-mir-495 HGNC:32085|miRBase:MI0003135 14 14q32.31 microRNA 495 miscRNA MIR495 microRNA 495 O - 20121230 -9606 574454 MIR496 - MIRN496|hsa-mir-496 HGNC:32086|miRBase:MI0003136 14 14q32.31 microRNA 496 miscRNA MIR496 microRNA 496 O - 20121230 -9606 574455 MIR193B - MIRN193B HGNC:32087|MIM:614734|miRBase:MI0003137 16 16p13.12 microRNA 193b miscRNA MIR193B microRNA 193b O - 20121230 -9606 574456 MIR497 - MIRN497|hsa-mir-497 HGNC:32088|miRBase:MI0003138 17 17p13.1 microRNA 497 miscRNA MIR497 microRNA 497 O - 20121230 -9606 574457 MIR181D - MIRN181D HGNC:32089|miRBase:MI0003139 19 19p13.13 microRNA 181d miscRNA MIR181D microRNA 181d O - 20121230 -9606 574458 MIR512-1 - MIRN512-1 HGNC:32090|miRBase:MI0003140 19 19q13.42 microRNA 512-1 miscRNA MIR512-1 microRNA 512-1 O - 20121230 -9606 574459 MIR512-2 - MIRN512-2 HGNC:32091|miRBase:MI0003141 19 19q13.42 microRNA 512-2 miscRNA MIR512-2 microRNA 512-2 O - 20121230 -9606 574460 MIR498 - MIRN498|hsa-mir-498 HGNC:32092|miRBase:MI0003142 19 19q13.42 microRNA 498 miscRNA MIR498 microRNA 498 O - 20121230 -9606 574461 MIR520E - MIRN520E HGNC:32093|miRBase:MI0003143 19 19q13.42 microRNA 520e miscRNA MIR520E microRNA 520e O - 20121230 -9606 574462 MIR515-1 - MIRN515-1 HGNC:32094|miRBase:MI0003144 19 19q13.42 microRNA 515-1 miscRNA MIR515-1 microRNA 515-1 O - 20121230 -9606 574463 MIR519E - MIRN519E HGNC:32095|miRBase:MI0003145 19 19q13.42 microRNA 519e miscRNA MIR519E microRNA 519e O - 20121230 -9606 574464 MIR520F - MIRN520F HGNC:32096|miRBase:MI0003146 19 19q13.42 microRNA 520f miscRNA MIR520F microRNA 520f O - 20121230 -9606 574465 MIR515-2 - MIRN515-2 HGNC:32097|miRBase:MI0003147 19 19q13.42 microRNA 515-2 miscRNA MIR515-2 microRNA 515-2 O - 20121230 -9606 574466 MIR519C - MIRN519C HGNC:32098|miRBase:MI0003148 19 19q13.42 microRNA 519c miscRNA MIR519C microRNA 519c O - 20121230 -9606 574467 MIR520A - MIRN520A HGNC:32099|miRBase:MI0003149 19 19q13.42 microRNA 520a miscRNA MIR520A microRNA 520a O - 20121230 -9606 574468 MIR526B - MIRN526B HGNC:32100|miRBase:MI0003150 19 19q13.42 microRNA 526b miscRNA MIR526B microRNA 526b O - 20121230 -9606 574469 MIR519B - MIRN519B HGNC:32101|miRBase:MI0003151 19 19q13.42 microRNA 519b miscRNA MIR519B microRNA 519b O - 20121230 -9606 574470 MIR525 - MIRN525|hsa-mir-525 HGNC:32102|miRBase:MI0003152 19 19q13.42 microRNA 525 miscRNA MIR525 microRNA 525 O - 20121230 -9606 574471 MIR523 - MIRN523|hsa-mir-523 HGNC:32103|miRBase:MI0003153 19 19q13.42 microRNA 523 miscRNA MIR523 microRNA 523 O - 20121230 -9606 574472 MIR518F - MIRN518F HGNC:32104|miRBase:MI0003154 19 19q13.42 microRNA 518f miscRNA MIR518F microRNA 518f O - 20121230 -9606 574473 MIR520B - MIRN520B HGNC:32105|miRBase:MI0003155 19 - microRNA 520b miscRNA MIR520B microRNA 520b O - 20121230 -9606 574474 MIR518B - MIRN518B HGNC:32106|miRBase:MI0003156 19 19q13.42 microRNA 518b miscRNA MIR518B microRNA 518b O - 20121230 -9606 574475 MIR526A1 - MIRN526A-1|MIRN526A1 HGNC:32107|miRBase:MI0003157 19 19q13.42 microRNA 526a-1 miscRNA MIR526A1 microRNA 526a-1 O - 20121230 -9606 574476 MIR520C - MIRN520C HGNC:32108|miRBase:MI0003158 19 19q13.42 microRNA 520c miscRNA MIR520C microRNA 520c O - 20121230 -9606 574477 MIR518C - MIRN518C HGNC:32109|miRBase:MI0003159 19 19q13.42 microRNA 518c miscRNA MIR518C microRNA 518c O - 20121230 -9606 574478 MIR524 - MIRN524|hsa-mir-524 HGNC:32110|miRBase:MI0003160 19 19q13.42 microRNA 524 miscRNA MIR524 microRNA 524 O - 20121230 -9606 574479 MIR517A - MIRN517A HGNC:32111|miRBase:MI0003161 19 19q13.42 microRNA 517a miscRNA MIR517A microRNA 517a O - 20121230 -9606 574480 MIR519D - MIRN519D HGNC:32112|MIM:614247|miRBase:MI0003162 19 19q13.42 microRNA 519d miscRNA MIR519D microRNA 519d O - 20121230 -9606 574481 MIR521-2 - MIRN521-2 HGNC:32113|miRBase:MI0003163 19 19q13.42 microRNA 521-2 miscRNA MIR521-2 microRNA 521-2 O - 20121230 -9606 574482 MIR520D - MIRN520D HGNC:32114|miRBase:MI0003164 19 - microRNA 520d miscRNA MIR520D microRNA 520d O - 20121230 -9606 574483 MIR517B - MIRN517B HGNC:32115|miRBase:MI0003165 19 19q13.42 microRNA 517b miscRNA MIR517B microRNA 517b O - 20121230 -9606 574484 MIR520G - MIRN520G HGNC:32116|miRBase:MI0003166 19 19q13.42 microRNA 520g miscRNA MIR520G microRNA 520g O - 20121230 -9606 574485 MIR516B2 - MIRN516-3|MIRN516B-2|MIRN516B2 HGNC:32117|miRBase:MI0003167 19 19q13.42 microRNA 516b-2 miscRNA MIR516B2 microRNA 516b-2 O - 20121230 -9606 574486 MIR526A2 - MIRN526A-2|MIRN526A2 HGNC:32118|miRBase:MI0003168 19 - microRNA 526a-2 miscRNA MIR526A2 microRNA 526a-2 O - 20121230 -9606 574487 MIR518E - MIRN518E HGNC:32119|miRBase:MI0003169 19 19q13.42 microRNA 518e miscRNA MIR518E microRNA 518e O - 20121230 -9606 574488 MIR518A1 - MIRN518A-1|MIRN518A1 HGNC:32120|miRBase:MI0003170 19 19q13.42 microRNA 518a-1 miscRNA MIR518A1 microRNA 518a-1 O - 20121230 -9606 574489 MIR518D - MIRN518D HGNC:32121|miRBase:MI0003171 19 19q13.42 microRNA 518d miscRNA MIR518D microRNA 518d O - 20121230 -9606 574490 MIR516B1 - MIRN516-4|MIRN516B-1|MIRN516B1 HGNC:32122|miRBase:MI0003172 19 19q13.42 microRNA 516b-1 miscRNA MIR516B1 microRNA 516b-1 O - 20121230 -9606 574491 MIR518A2 - MIRN518A-2|MIRN518A2 HGNC:32123|miRBase:MI0003173 19 19q13.42 microRNA 518a-2 miscRNA MIR518A2 microRNA 518a-2 O - 20121230 -9606 574492 MIR517C - MIRN517C HGNC:32124|miRBase:MI0003174 19 19q13.42 microRNA 517c miscRNA MIR517C microRNA 517c O - 20121230 -9606 574493 MIR520H - MIRN520H HGNC:32125|MIM:614755|miRBase:MI0003175 19 19q13.42 microRNA 520h miscRNA MIR520H microRNA 520h O - 20121230 -9606 574494 MIR521-1 - MIRN521-1 HGNC:32126|miRBase:MI0003176 19 19q13.42 microRNA 521-1 miscRNA MIR521-1 microRNA 521-1 O - 20121230 -9606 574495 MIR522 - MIRN522|hsa-mir-522 HGNC:32127|miRBase:MI0003177 19 19q13.42 microRNA 522 miscRNA MIR522 microRNA 522 O - 20121230 -9606 574496 MIR519A1 - MIRN519A-1|MIRN519A1 HGNC:32128|miRBase:MI0003178 19 19q13.42 microRNA 519a-1 miscRNA MIR519A1 microRNA 519a-1 O - 20121230 -9606 574497 MIR527 - MIRN527|hsa-mir-527 HGNC:32129|miRBase:MI0003179 19 19q13.42 microRNA 527 miscRNA MIR527 microRNA 527 O - 20121230 -9606 574498 MIR516A1 - MIRN516-1|MIRN516A-1|MIRN516A1 HGNC:32130|miRBase:MI0003180 19 19q13.42 microRNA 516a-1 miscRNA MIR516A1 microRNA 516a-1 O - 20121230 -9606 574499 MIR516A2 - MIRN516-2|MIRN516A-2|MIRN516A2 HGNC:32131|miRBase:MI0003181 19 19q13.42 microRNA 516a-2 miscRNA MIR516A2 microRNA 516a-2 O - 20121230 -9606 574500 MIR519A2 - MIRN519A-2|MIRN519A2 HGNC:32132|miRBase:MI0003182 19 19q13.42 microRNA 519a-2 miscRNA MIR519A2 microRNA 519a-2 O - 20121230 -9606 574501 MIR499A - MIR499|MIRN499|hsa-mir-499a HGNC:32133|MIM:613614|miRBase:MI0003183 20 20q11.22 microRNA 499a miscRNA MIR499A microRNA 499a O - 20121230 -9606 574502 MIR500A - MIR500|MIRN500|hsa-mir-500|hsa-mir-500a HGNC:32134|miRBase:MI0003184 X Xp11.23 microRNA 500a miscRNA MIR500A microRNA 500a O - 20121230 -9606 574503 MIR501 - MIRN501|hsa-mir-501 HGNC:32135|miRBase:MI0003185 X Xp11.23 microRNA 501 miscRNA MIR501 microRNA 501 O - 20121230 -9606 574504 MIR502 - MIRN502|hsa-mir-502 HGNC:32136|miRBase:MI0003186 X Xp11.23 microRNA 502 miscRNA MIR502 microRNA 502 O - 20121230 -9606 574505 MIR450A2 - MIRN450-2|MIRN450A-2|MIRN450A2 HGNC:32137|miRBase:MI0003187 X Xq26.3 microRNA 450a-2 miscRNA MIR450A2 microRNA 450a-2 O - 20121230 -9606 574506 MIR503 - MIRN503|hsa-mir-503 HGNC:32138|MIM:300865|miRBase:MI0003188 X Xq26.3 microRNA 503 miscRNA MIR503 microRNA 503 O - 20121230 -9606 574507 MIR504 - MIRN504|hsa-mir-504 HGNC:32139|miRBase:MI0003189 X Xq26.3 microRNA 504 miscRNA MIR504 microRNA 504 O - 20121230 -9606 574508 MIR505 - MIRN505|hsa-mir-505 HGNC:32140|miRBase:MI0003190 X Xq27.1 microRNA 505 miscRNA MIR505 microRNA 505 O - 20121230 -9606 574509 MIR513A1 - MIRN513-1|MIRN513A1 HGNC:32141|miRBase:MI0003191 X Xq27.3 microRNA 513a-1 miscRNA MIR513A1 microRNA 513a-1 O - 20121230 -9606 574510 MIR513A2 - MIRN513-2|MIRN513A-2|MIRN513A2|hsa-mir-513a-2 HGNC:32142|miRBase:MI0003192 X Xq27.3 microRNA 513a-2 miscRNA MIR513A2 microRNA 513a-2 O - 20121230 -9606 574511 MIR506 - MIRN506|hsa-mir-506 HGNC:32143|MIM:300877|miRBase:MI0003193 X Xq27.3 microRNA 506 miscRNA MIR506 microRNA 506 O - 20121230 -9606 574512 MIR507 - MIRN507|hsa-mir-507 HGNC:32144|miRBase:MI0003194 X Xq27.3 microRNA 507 miscRNA MIR507 microRNA 507 O - 20121230 -9606 574513 MIR508 - MIRN508|hsa-mir-508 HGNC:32145|MIM:300874|miRBase:MI0003195 X Xq27.3 microRNA 508 miscRNA MIR508 microRNA 508 O - 20121230 -9606 574514 MIR509-1 - MIRN509|MIRN509-1|hsa-mir-509 HGNC:32146|MIM:300875|miRBase:MI0003196 X Xq27.3 microRNA 509-1 miscRNA MIR509-1 microRNA 509-1 O - 20121230 -9606 574515 MIR510 - MIRN510|hsa-mir-510 HGNC:32147|MIM:300866|miRBase:MI0003197 X Xq27.3 microRNA 510 miscRNA MIR510 microRNA 510 O - 20121230 -9606 574516 MIR514A1 - MIR514-1|MIRN514-1|hsa-mir-514a-1 HGNC:32148|miRBase:MI0003198 X Xq27.3 microRNA 514a-1 miscRNA MIR514A1 microRNA 514a-1 O - 20121230 -9606 574517 MIR514A2 - MIR514-2|MIRN514-2|hsa-mir-514a-2 HGNC:32149|miRBase:MI0003199 X Xq27.3 microRNA 514a-2 miscRNA MIR514A2 microRNA 514a-2 O - 20121230 -9606 574518 MIR514A3 - MIR514-3|MIRN514-3|hsa-mir-514a-3 HGNC:32150|miRBase:MI0003200 X Xq27.3 microRNA 514a-3 miscRNA MIR514A3 microRNA 514a-3 O - 20121230 -9606 574532 NUDT15P1 - - HGNC:17266 8 8q12.1 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene 1 pseudo NUDT15P1 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene 1 O - 20121230 -9606 574533 NUDT15P2 - - HGNC:20784 17 17q11.2 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene 2 pseudo NUDT15P2 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene 2 O - 20121230 -9606 574536 DPY19L1P2 - THC1072510 HGNC:22851 7 - dpy-19-like 1 pseudogene 2 (C. elegans) pseudo DPY19L1P2 dpy-19-like 1 pseudogene 2 (C. elegans) O - 20090331 -9606 574537 UGT2A2 - - HGNC:28183|Ensembl:ENSG00000173610 4 4q13.3 UDP glucuronosyltransferase 2 family, polypeptide A2 protein-coding UGT2A2 UDP glucuronosyltransferase 2 family, polypeptide A2 O UDP-glucuronosyltransferase 2A2 20121230 -9606 574538 LOC574538 - - - 12 12p13.33 uncharacterized LOC574538 miscRNA - - - - 20121230 -9606 594832 MYP11 - - HGNC:24906|MIM:609994 4 4q22-q27 myopia 11 (high grade, autosomal dominant) unknown MYP11 myopia 11 (high grade, autosomal dominant) O - 20120622 -9606 594837 SNORD101 - U101 HGNC:32764 6 6q23.2 small nucleolar RNA, C/D box 101 snoRNA SNORD101 small nucleolar RNA, C/D box 101 O - 20121230 -9606 594838 SNORD100 - HBII-429 HGNC:32763 6 6q23.2 small nucleolar RNA, C/D box 100 snoRNA SNORD100 small nucleolar RNA, C/D box 100 O - 20121230 -9606 594839 SNORA33 - ACA33 HGNC:32623 6 6q23.2 small nucleolar RNA, H/ACA box 33 snoRNA SNORA33 small nucleolar RNA, H/ACA box 33 O - 20121230 -9606 594840 ZFAT-AS1 - NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS HGNC:33992 8 8q24.22 ZFAT antisense RNA 1 miscRNA ZFAT-AS1 ZFAT antisense RNA 1 O - 20121230 -9606 594841 WDR45P - - - 4 4q31.3 WD repeat domain 45 pseudogene pseudo - - - - 20121230 -9606 594842 HAS2-AS1 - HAS2-AS|HAS2AS|HASNT|NCRNA00077 HGNC:34340|MIM:614353 8 8q24.13 HAS2 antisense RNA 1 miscRNA HAS2-AS1 HAS2 antisense RNA 1 O - 20121230 -9606 594855 CPLX3 Nbla11589 CPX-III|CPXIII HGNC:27652|MIM:609585|Ensembl:ENSG00000213578|Vega:OTTHUMG00000142816 15 15q24.1 complexin 3 protein-coding CPLX3 complexin 3 O CPX III|complexin III|complexin-3 20121230 -9606 594857 NPS - - HGNC:33940|MIM:609513|Ensembl:ENSG00000214285 10 10q26.2 neuropeptide S protein-coding NPS neuropeptide S O - 20121230 -9606 595097 SNORD16 - U16 HGNC:32712 15 15q22 small nucleolar RNA, C/D box 16 snoRNA SNORD16 small nucleolar RNA, C/D box 16 O - 20121230 -9606 595098 SNORD18A - U18A HGNC:32714 15 15q22 small nucleolar RNA, C/D box 18A snoRNA SNORD18A small nucleolar RNA, C/D box 18A O - 20121230 -9606 595099 SNORD18B - U18B HGNC:32715 15 15q22 small nucleolar RNA, C/D box 18B snoRNA SNORD18B small nucleolar RNA, C/D box 18B O - 20121230 -9606 595100 SNORD18C - U18C HGNC:32716 15 15q22 small nucleolar RNA, C/D box 18C snoRNA SNORD18C small nucleolar RNA, C/D box 18C O - 20121230 -9606 595101 LOC595101 - - - 16 16p11.2 smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene pseudo - - - - 20121230 -9606 595135 PGM5P2 - - HGNC:18965 9 9q12 phosphoglucomutase 5 pseudogene 2 pseudo PGM5P2 phosphoglucomutase 5 pseudogene 2 O - 20121230 -9606 606293 KLKP1 - KARMA|KLK31P|KRSP1|PsiKLK1|YKLK1 HGNC:21260 19 19q13.41 kallikrein pseudogene 1 pseudo KLKP1 kallikrein pseudogene 1 O - 20121230 -9606 606495 CYB5RL RP11-446E24.1 - HGNC:32220|Ensembl:ENSG00000215883|Vega:OTTHUMG00000008082 1 1p32.3 cytochrome b5 reductase-like protein-coding CYB5RL cytochrome b5 reductase-like O NADH-cytochrome b5 reductase-like 20121230 -9606 606500 SNORD68 - HBII-202 HGNC:32729 16 16q24.3 small nucleolar RNA, C/D box 68 snoRNA SNORD68 small nucleolar RNA, C/D box 68 O - 20121230 -9606 606523 DFNB57 - - HGNC:26774 10 10q23.1-q26.11 deafness, autosomal recessive 57 unknown DFNB57 deafness, autosomal recessive 57 O - 20120318 -9606 606551 UBE2MP1 - - HGNC:32195 16 16p11.2 ubiquitin-conjugating enzyme E2M pseudogene 1 pseudo UBE2MP1 ubiquitin-conjugating enzyme E2M pseudogene 1 O - 20121230 -9606 606553 C8orf49 - - HGNC:32200 8 8p23.1 chromosome 8 open reading frame 49 unknown C8orf49 chromosome 8 open reading frame 49 O - 20121230 -9606 606719 DFNB66 - - HGNC:32193|MIM:610212 6 6p22.3-p21.2 deafness, autosomal recessive 66 unknown DFNB66 deafness, autosomal recessive 66 O - 20120622 -9606 606724 LOC606724 - - - 16 16p11.2 coronin, actin binding protein, 1A pseudogene pseudo - - - - 20121230 -9606 613037 LOC613037 - - - 16 16p11.2 nuclear pore complex interacting protein pseudogene pseudo - - - - 20121230 -9606 613038 LOC613038 - - - 16 16p11.2 coiled-coil domain containing 101 pseudogene pseudo - - - - 20121230 -9606 613126 LOC613126 - - - 7 7q21.2 uncharacterized LOC613126 unknown - - - - 20121230 -9606 613204 IFITM8P HC1901 - HGNC:32202 8 8q12.3 interferon induced transmembrane protein 8 pseudogene pseudo IFITM8P interferon induced transmembrane protein 8 pseudogene O - 20121230 -9606 613206 LOC613206 - - - 9 9q33 myeloproliferative disease associated tumor antigen 5 unknown - - - - 20120725 -9606 613209 DEFB135 - DEFB136 HGNC:32400|Ensembl:ENSG00000205883|Vega:OTTHUMG00000158719 8 8p23.1 defensin, beta 135 protein-coding DEFB135 defensin, beta 135 O beta-defensin 135|beta-defensin 136 20121230 -9606 613210 DEFB136 - DEFB137 HGNC:34433|Ensembl:ENSG00000205884|Vega:OTTHUMG00000158720 8 8p23.1 defensin, beta 136 protein-coding DEFB136 defensin, beta 136 O beta-defensin 136|beta-defensin 137 20121230 -9606 613211 DEFB134 - - HGNC:32399|Ensembl:ENSG00000205882|Vega:OTTHUMG00000158718 8 8p23.1 defensin, beta 134 protein-coding DEFB134 defensin, beta 134 O beta-defensin 134|beta-defensin 135 20121230 -9606 613212 CTXN3 - KABE HGNC:31110|Ensembl:ENSG00000205279|Vega:OTTHUMG00000163285 5 5q23.2 cortexin 3 protein-coding CTXN3 cortexin 3 O cortexin-3|kidney and brain-expressed protein 20121230 -9606 613227 HIGD1C HC1096 GM921 HGNC:28044|Ensembl:ENSG00000214511|Vega:OTTHUMG00000169488 12 12q13.12 HIG1 hypoxia inducible domain family, member 1C protein-coding HIGD1C HIG1 hypoxia inducible domain family, member 1C O HIG1 domain family member 1C|HIG1 domain family, member 1C 20121230 -9606 613253 DEFA1A3 - DEFA1|DEFA3|DEFT1P HGNC:32231 8 8p23.1 defensin, alpha 1 and alpha 3, variable copy number locus other DEFA1A3 defensin, alpha 1 and alpha 3, variable copy number locus O - 20120318 -9606 613266 LOC613266 - - - 20 20p12.1 uncharacterized LOC613266 other - - - - 20120622 -9606 619189 SERINC4 - - HGNC:32237|MIM:614550|Ensembl:ENSG00000184716|Vega:OTTHUMG00000060144 15 15q15.3 serine incorporator 4 protein-coding SERINC4 serine incorporator 4 O - 20121230 -9606 619190 FDPSL2A - - - 7 7q11.23 MGC44478 pseudo - - - - 20121230 -9606 619207 LOC619207 - - - 10 10q26.3 scavenger receptor protein family member pseudo - - - - 20121230 -9606 619208 FAM229B RP1-142L7.6 C6orf225 HGNC:33858|Ensembl:ENSG00000203778|Vega:OTTHUMG00000015383 6 6q21 family with sequence similarity 229, member B protein-coding FAM229B family with sequence similarity 229, member B O UPF0731 protein C6orf225 20121230 -9606 619211 DFNB58 - - HGNC:18252 2 2q14.2-q14.3 deafness, autosomal recessive 58 unknown DFNB58 deafness, autosomal recessive 58 O - 20120318 -9606 619212 PA2G4P3 - HsT2542|PA2G4L4 HGNC:31731 18 18q11.2 proliferation-associated 2G4 pseudogene 3 pseudo PA2G4P3 proliferation-associated 2G4 pseudogene 3 O - 20121230 -9606 619279 ZNF704 - Gig1 HGNC:32291|Ensembl:ENSG00000164684|Vega:OTTHUMG00000164733 8 8q21.13 zinc finger protein 704 protein-coding ZNF704 zinc finger protein 704 O - 20121230 -9606 619341 FAM93A - - HGNC:32288 8 8p23.1 family with sequence similarity 93, member A unknown FAM93A family with sequence similarity 93, member A O - 20121201 -9606 619342 FAM93B - - HGNC:32289 8 8p23.1 family with sequence similarity 93, member B unknown FAM93B family with sequence similarity 93, member B O - 20121201 -9606 619343 ERICH1-AS1 - C8orf68 HGNC:32290 8 8p23.3 ERICH1 antisense RNA 1 miscRNA ERICH1-AS1 ERICH1 antisense RNA 1 O - 20121222 -9606 619344 C8orf69 - - - 8 8q22.1 uncharacterized LOC619344 miscRNA - - - - 20121230 -9606 619349 SETP3 - - HGNC:31115 17 17q23.2 SET pseudogene 3 pseudo SETP3 SET pseudogene 3 O - 20121230 -9606 619351 LINC00589 - C8orf75 HGNC:32299 8 8p12 long intergenic non-protein coding RNA 589 miscRNA LINC00589 long intergenic non-protein coding RNA 589 O - 20121230 -9606 619370 MCDR4 - - HGNC:32303 14 14q11.2 macular dystrophy, retinal, 4 (North Carolina type with progressive sensorineural hearing loss) unknown MCDR4 macular dystrophy, retinal, 4 (North Carolina type with progressive sensorineural hearing loss) O - 20120318 -9606 619373 MBOAT4 FKSG89 GOAT|OACT4 HGNC:32311|MIM:611940|Ensembl:ENSG00000177669|Vega:OTTHUMG00000163824 8 8p12 membrane bound O-acyltransferase domain containing 4 protein-coding MBOAT4 membrane bound O-acyltransferase domain containing 4 O O-acyltransferase (membrane bound) domain containing 4|O-acyltransferase domain-containing protein 4|ghrelin O-acyltransferase|membrane-bound O-acyltransferase domain-containing protein 4 20121230 -9606 619379 SPG29 - - HGNC:30161|MIM:609727 1 1p31.1-p21.1 spastic paraplegia 29 (autosomal dominant) unknown SPG29 spastic paraplegia 29 (autosomal dominant) O - 20120622 -9606 619383 SCARNA9 - Z32|mgU2-19/30 HGNC:32566 11 11q21 small Cajal body-specific RNA 9 miscRNA SCARNA9 small Cajal body-specific RNA 9 O - 20121230 -9606 619394 SPOAN - - MIM:609541 11 - spastic paraplegia, optic atrophy, and neuropathy unknown - - - - 20120622 -9606 619397 FEB6 - - HGNC:33478|MIM:609253 18 18p11.2 febrile convulsions 6 unknown FEB6 febrile convulsions 6 O - 20120622 -9606 619398 FEB5 - - HGNC:33477|MIM:609255 6 6q22-q24 febrile convulsions 5 unknown FEB5 febrile convulsions 5 O - 20120622 -9606 619399 ETL2 - FTLE MIM:608096 12 12q22-q23.3 epilepsy, familial temporal lobe unknown - - - - 20120622 -9606 619402 HPC5 - - MIM:609299 3 3p26 prostate cancer, hereditary, 5 unknown - - - - 20120622 -9606 619404 CATCN1 - - MIM:609376 19 19q13 cataract, congenital nuclear, autosomal recessive unknown - - - - 20120622 -9606 619405 AIS4 - VAMAS5 MIM:609400 4 4q13-q21 autoimmune disease, susceptibility to, 4 unknown - - - - 20120622 -9606 619406 HPE8 - - MIM:609408 14 14q13 holoprosencephaly 8 unknown - - - - 20120622 -9606 619407 MSSD - - MIM:609432 17 17p13.3 syndactyly, mesoaxial synostotic, with phalangeal reduction unknown - - - - 20120622 -9606 619408 PSNP2 - - MIM:609454 1 1q31.1 supranuclear palsy, progressive, 2 unknown - - - - 20120622 -9606 619409 LOC619409 - - MIM:609456 4 4p16.3 muscular dystrophy, congenital, merosin-positive unknown - - - - 20120622 -9606 619410 NEDE - - MIM:609469 11 11q24 nephropathy, progressive, with deafness unknown - - - - 20120622 -9606 619411 LVNC2 - - MIM:609470 11 11p15 noncompaction of left ventricular myocardium, familial isolated, autosomal dominant 2 unknown - - - - 20120622 -9606 619418 FAM90A21P - - HGNC:32269 8 8p23.1 family with sequence similarity 90, member A21 pseudogene pseudo FAM90A21P family with sequence similarity 90, member A21, pseudogene O - 20121230 -9606 619423 FAM85A - - HGNC:17606 8 8p23.1 family with sequence similarity 85, member A miscRNA FAM85A family with sequence similarity 85, member A O - 20121209 -9606 619426 C8orf60 - - HGNC:32274 8 8q24.3 chromosome 8 open reading frame 60 unknown C8orf60 chromosome 8 open reading frame 60 O - 20120622 -9606 619427 C8orf66 - - HGNC:32282 8 8q24.3 chromosome 8 open reading frame 66 unknown C8orf66 chromosome 8 open reading frame 66 O - 20120622 -9606 619431 FAM85B - - HGNC:32160 8 8p23.1 family with sequence similarity 85, member B protein-coding FAM85B family with sequence similarity 85, member B O - 20120508 -9606 619434 LINC00051 - C8orf43|NCRNA00051 HGNC:32028 8 8q24.3 long intergenic non-protein coding RNA 51 miscRNA LINC00051 long intergenic non-protein coding RNA 51 O - 20121230 -9606 619443 RPS26P7 - HsT24280|RPS26_15_908 HGNC:20077 8 8q12.1 ribosomal protein S26 pseudogene 7 pseudo RPS26P7 ribosomal protein S26 pseudogene 7 O - 20121230 -9606 619445 RPL10P3 - bA567J2.2 HGNC:23300 9 9q33.1 ribosomal protein L10 pseudogene 3 pseudo RPL10P3 ribosomal protein L10 pseudogene 3 O - 20121230 -9606 619448 RPS12P2 - RPS12_9_1071|bA40F6.3 HGNC:24221 10 10q22.3 ribosomal protein S12 pseudogene 2 pseudo RPS12P2 ribosomal protein S12 pseudogene 2 O - 20121230 -9606 619449 RPIAP1 - - HGNC:27250 18 18q21.33 ribose 5-phosphate isomerase A pseudogene 1 pseudo RPIAP1 ribose 5-phosphate isomerase A pseudogene 1 O - 20121230 -9606 619452 RPS29P2 - HsT23291|RPS29_12_897 HGNC:31083 8 8p11.21 ribosomal protein S29 pseudogene 2 pseudo RPS29P2 ribosomal protein S29 pseudogene 2 O - 20121230 -9606 619455 SPANXA2-OT1 RP1-171K16.4 CXorf18 HGNC:31683 X Xq27.2 SPANXA2 overlapping transcript 1 (non-protein coding) miscRNA SPANXA2-OT1 SPANXA2 overlapping transcript 1 (non-protein coding) O - 20121230 -9606 619457 UBE2WP1 - UBE2WP HGNC:32198 1 1p21.3 ubiquitin-conjugating enzyme E2W pseudogene 1 pseudo UBE2WP1 ubiquitin-conjugating enzyme E2W pseudogene 1 O - 20121230 -9606 619464 RPL31P9 - - HGNC:31893 18 18q22.1 ribosomal protein L31 pseudogene 9 pseudo RPL31P9 ribosomal protein L31 pseudogene 9 O - 20121230 -9606 619465 ERVK-8 - ERVK8|HERV-K115|envK6 HGNC:32302 8 8p23.1 endogenous retrovirus group K, member 8 unknown ERVK-8 endogenous retrovirus group K, member 8 O - 20120318 -9606 619468 RCM2 - - MIM:609578 10 10q23.3 cardiomyopathy, familial restrictive, 2 unknown - - - - 20120622 -9606 619469 SCO - CYDELq11|SPGFY1 MIM:400042 Y Yq11 Sertoli cell-only syndrome, Y-linked unknown - - - - 20120622 -9606 619471 PPR3 - - MIM:609573 7 7q32 photoparoxysmal response 3 unknown - - - - 20120622 -9606 619475 PFM3 - - HGNC:20094|MIM:609566 4 4q21-q23 parietal foramina 3 unknown PFM3 parietal foramina 3 O - 20120622 -9606 619477 GCCD3 - FGD2|FGD3|GCCD2 MIM:609197 8 8q11.2-q13.2 glucocorticoid deficiency 3 unknown - - - - 20120622 -9606 619478 ATFB2 - - MIM:608988 6 6q14-q16 familial atrial fibrillation 2 unknown - - - - 20120622 -9606 619479 STQTL5 - - MIM:608982 3 3p26 stature quantitative trait locus 5 unknown - - - - 20120622 -9606 619480 LOC619480 - - MIM:608970 5 5q21.2-q33.2 butterfly-shaped pigmentary macular dystrophy 2 unknown - - - - 20120622 -9606 619483 LCA9 - - HGNC:19105|MIM:608553 1 1p36 Leber congenital amaurosis 9 unknown LCA9 Leber congenital amaurosis 9 O - 20120622 -9606 619488 SCZD12 - - MIM:608543 1 1p schizophrenia 12 unknown - - - - 20120622 -9606 619493 PAND2 - - MIM:607853 9 9q31 panic disorder 2 unknown - - - - 20120622 -9606 619496 CMT2H - - MIM:607731 8 8q21.3 Charcot-Marie-Tooth disease, axonal, type 2H unknown - - - - 20120622 -9606 619498 SNORD74 - U74|Z18 HGNC:32734 1 1q25.1 small nucleolar RNA, C/D box 74 snoRNA SNORD74 small nucleolar RNA, C/D box 74 O - 20121230 -9606 619499 SNORA27 - ACA27 HGNC:32617 13 13q12.2 small nucleolar RNA, H/ACA box 27 snoRNA SNORA27 small nucleolar RNA, H/ACA box 27 O - 20121230 -9606 619501 HCC - - MIM:607464 17 17p13 thyroid carcinoma, Hurthle cell unknown - - - - 20120318 -9606 619503 FSI - - MIM:606035 6 6q22-q23 fasting glucose and specific insulin levels unknown - - - - 20120622 -9606 619505 SNORA21 - ACA21 HGNC:32611 17 17q12 small nucleolar RNA, H/ACA box 21 snoRNA SNORA21 small nucleolar RNA, H/ACA box 21 O - 20121230 -9606 619509 WTRS - - MIM:300421 X Xp22.3 Wittwer syndrome unknown - - - - 20120622 -9606 619510 AMCX5 - - MIM:300158 X Xq23-q27 arthrogryposis, X-linked, type 5 unknown - - - - 20120622 -9606 619511 MHB - - MIM:255160 3 3p22.2-p21.32 myopathy, hyaline body, autosomal recessive unknown - - - - 20120622 -9606 619518 C1orf191 MSTP128 MST128 HGNC:32328 1 1p32.3 chromosome 1 open reading frame 191 unknown C1orf191 chromosome 1 open reading frame 191 O - 20121230 -9606 619519 TWF1P1 - A6ps1|PTK9P|PTK9P1 HGNC:21736 17 17q11.2 twinfilin 1 pseudogene 1 pseudo TWF1P1 twinfilin 1 pseudogene 1 O - 20121230 -9606 619536 BPPV - - MIM:193007 6 6q vestibulopathy, familial unknown - - - - 20120622 -9606 619537 VV - - MIM:192200 16 16q24 varicose veins unknown - - - - 20120622 -9606 619538 OMS - COME/ROM MIM:166760 10|19|3 10q26.3;19q13.42-q13.43;3p25.3 otitis media, susceptibility to unknown - - - - 20120622 -9606 619539 LOC619539 - - MIM:151001 4 4q21.1-q22.3 lentiginosis, inherited patterned unknown - - - - 20120622 -9606 619540 LOC619540 - - MIM:148600 15 15q22-q24 keratosis palmoplantaris papulosa unknown - - - - 20120622 -9606 619552 MIR483 - MIRN483|hsa-mir-483 HGNC:32340|miRBase:MI0002467 11 11p15.5 microRNA 483 miscRNA MIR483 microRNA 483 O - 20121230 -9606 619553 MIR484 - MIRN484|hsa-mir-484 HGNC:32341|miRBase:MI0002468 16 16p13.11 microRNA 484 miscRNA MIR484 microRNA 484 O - 20121230 -9606 619554 MIR486 - MIRN486|hsa-mir-486 HGNC:32342|miRBase:MI0002470 8 8p11.21 microRNA 486 miscRNA MIR486 microRNA 486 O - 20121230 -9606 619555 MIR487A - MIRN487|MIRN487A|hsa-mir-487 HGNC:32343|miRBase:MI0002471 14 14q32.31 microRNA 487a miscRNA MIR487A microRNA 487a O - 20121230 -9606 619556 MIR455 - MIRN455|hsa-mir-455 HGNC:32344|miRBase:MI0003513 9 9q32 microRNA 455 miscRNA MIR455 microRNA 455 O - 20121230 -9606 619562 SNORA3 - ACA3 HGNC:32586 11 11p15 small nucleolar RNA, H/ACA box 3 snoRNA SNORA3 small nucleolar RNA, H/ACA box 3 O - 20121230 -9606 619563 SNORA7A - ACA7 HGNC:32592 3 3p25 small nucleolar RNA, H/ACA box 7A snoRNA SNORA7A small nucleolar RNA, H/ACA box 7A O - 20121230 -9606 619564 SNORD72 - HBII-240 HGNC:32733 5 5p13 small nucleolar RNA, C/D box 72 snoRNA SNORD72 small nucleolar RNA, C/D box 72 O - 20121230 -9606 619565 SNORA52 - ACA52 HGNC:32645 11 11p15 small nucleolar RNA, H/ACA box 52 snoRNA SNORA52 small nucleolar RNA, H/ACA box 52 O - 20121230 -9606 619567 SNORD2 - R39B|SNR39B HGNC:32678 3 3q27 small nucleolar RNA, C/D box 2 snoRNA SNORD2 small nucleolar RNA, C/D box 2 O - 20121230 -9606 619568 SNORA4 - ACA4 HGNC:32587 3 3q27 small nucleolar RNA, H/ACA box 4 snoRNA SNORA4 small nucleolar RNA, H/ACA box 4 O - 20121230 -9606 619569 SNORA41 - ACA41 HGNC:32634 2 2q33 small nucleolar RNA, H/ACA box 41 snoRNA SNORA41 small nucleolar RNA, H/ACA box 41 O - 20121230 -9606 619570 SNORD95 - U95 HGNC:32757 5 5q35.3 small nucleolar RNA, C/D box 95 snoRNA SNORD95 small nucleolar RNA, C/D box 95 O - 20121230 -9606 619571 SNORD96A - U96A HGNC:32758 5 5q35.3 small nucleolar RNA, C/D box 96A snoRNA SNORD96A small nucleolar RNA, C/D box 96A O - 20121230 -9606 641293 RPL21P19 - RPL21_7_151 HGNC:35748 1 1q32.1 ribosomal protein L21 pseudogene 19 pseudo RPL21P19 ribosomal protein L21 pseudogene 19 O - 20121230 -9606 641298 SMG1P1 - - HGNC:44186 16 16p12.2 smg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene 1 pseudo SMG1P1 smg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene 1 O - 20121230 -9606 641311 RPL31P11 - RPL31_1_108 HGNC:35849 1 1q23.3 ribosomal protein L31 pseudogene 11 pseudo RPL31P11 ribosomal protein L31 pseudogene 11 O - 20121230 -9606 641312 SAR1AP2 - SAR1P2|SARA1P HGNC:20770 10 10q26.2 SAR1 homolog A (S. cerevisiae) pseudogene 2 pseudo SAR1AP2 SAR1 homolog A (S. cerevisiae) pseudogene 2 O - 20121230 -9606 641314 LINC00594 - C15orf36 HGNC:32358 15 15q15.1 long intergenic non-protein coding RNA 594 protein-coding LINC00594 long intergenic non-protein coding RNA 594 O - 20121021 -9606 641339 ZNF674 hCG_15400 MRX92|ZNF673B HGNC:17625|MIM:300573|Ensembl:ENSG00000251192|Vega:OTTHUMG00000021420 X Xp11.3 zinc finger protein 674 protein-coding ZNF674 zinc finger protein 674 O zinc finger family member 674 20121230 -9606 641364 SLC7A11-AS1 - - HGNC:44064 4 4q28.3 SLC7A11 antisense RNA 1 miscRNA SLC7A11-AS1 SLC7A11 antisense RNA 1 O - 20121230 -9606 641365 LINC00616 - - HGNC:44065 4 4q28.3 long intergenic non-protein coding RNA 616 miscRNA LINC00616 long intergenic non-protein coding RNA 616 O - 20121230 -9606 641367 LOC641367 - - - 19 19p12 cyclin Y-like 1 pseudogene pseudo - - - - 20121230 -9606 641371 ACOT1 - ACH2|CTE-1|LACH2 HGNC:33128|MIM:614313|Ensembl:ENSG00000184227|Vega:OTTHUMG00000171607 14 14q24.3 acyl-CoA thioesterase 1 protein-coding ACOT1 acyl-CoA thioesterase 1 O CTE-I|CTE-Ib|acyl-coenzyme A thioesterase 1|inducible cytosolic acyl-coenzyme A thioester hydrolase|long chain acyl-CoA hydrolase|long chain acyl-CoA thioester hydrolase 20121230 -9606 641372 ACOT6 - C14orf42|c14_5530 HGNC:33159|MIM:614267|Ensembl:ENSG00000205669|Vega:OTTHUMG00000171609 14 14q24.3 acyl-CoA thioesterase 6 protein-coding ACOT6 acyl-CoA thioesterase 6 O putative acyl-coenzyme A thioesterase 6 20121230 -9606 641373 NRON - NCRNA00194 HGNC:37079|MIM:609618 9 9q33.3|9 non-protein coding RNA, repressor of NFAT miscRNA NRON non-protein coding RNA, repressor of NFAT O - 20121230 -9606 641378 LOC641378 RP3-473J16.1 - - X Xq13.3 ADP-ribosylation factor-like 5A pseudogene pseudo - - - - 20121230 -9606 641379 ARL5AP4 - - HGNC:43936 22 22q11.2 ADP-ribosylation factor-like 5A pseudogene 4 pseudo ARL5AP4 ADP-ribosylation factor-like 5A pseudogene 4 O - 20121230 -9606 641380 ARL5AP2 - RP11-379D21.2-001 HGNC:43937 10 10q24.2 ADP-ribosylation factor-like 5A pseudogene 2 pseudo ARL5AP2 ADP-ribosylation factor-like 5A pseudogene 2 O - 20121230 -9606 641381 LOC641381 - - - 2 2q23.1 ADP-ribosylation factor-like 5A pseudogene pseudo - - - - 20121230 -9606 641382 ARL5AP1 - RP11-320L24.1-001 HGNC:43933 X Xq24 ADP-ribosylation factor-like 5A pseudogene 1 pseudo ARL5AP1 ADP-ribosylation factor-like 5A pseudogene 1 O - 20121230 -9606 641384 TMEM75 - - HGNC:32295 8 8q24.21 transmembrane protein 75 unknown TMEM75 transmembrane protein 75 O - 20121230 -9606 641433 RP32 - - HGNC:21902|MIM:609913 1 1p21.2-p13.3 retinitis pigmentosa 32 (autosomal recessive) unknown RP32 retinitis pigmentosa 32 (autosomal recessive) O - 20120622 -9606 641451 SNORA19 - ACA19 HGNC:32609 10 10q26 small nucleolar RNA, H/ACA box 19 snoRNA SNORA19 small nucleolar RNA, H/ACA box 19 O - 20121230 -9606 641455 POTEM - ACT|P704P|POTE14beta HGNC:37096|Ensembl:ENSG00000187537|Vega:OTTHUMG00000170518 14 14q11.2 POTE ankyrin domain family, member M protein-coding POTEM POTE ankyrin domain family, member M O ANKRD26-like family C member ENSP00000349402|prostate-specific P704P|putative POTE ankyrin domain family member M 20121230 -9606 641456 CRIP1P2 - - HGNC:44517 3 3p24 cysteine-rich protein 1 (intestinal) pseudogene 2 pseudo CRIP1P2 cysteine-rich protein 1 (intestinal) pseudogene 2 O - 20121230 -9606 641457 CRIP1P4 - - HGNC:44519 22 22q11.2 cysteine-rich protein 1 (intestinal) pseudogene 4 pseudo CRIP1P4 cysteine-rich protein 1 (intestinal) pseudogene 4 O - 20121230 -9606 641467 TSC22D1-AS1 - - HGNC:43684 13 13q14.11 TSC22D1 antisense RNA 1 miscRNA TSC22D1-AS1 TSC22D1 antisense RNA 1 O - 20121230 -9606 641510 LOC641510 - - - - - uncharacterized LOC641510 unknown - - - - 20120508 -9606 641515 LOC641515 - - - 1 1q31 uncharacterized LOC641515 pseudo - - - - 20121230 -9606 641516 KC6 - - - 18 - keratoconus gene 6 miscRNA - - - - 20121230 -9606 641517 DEFB109P1B - DEF109P1B|DEFB109 HGNC:33469 8 8p23.1 defensin, beta 109, pseudogene 1B pseudo DEFB109P1B defensin, beta 109, pseudogene 1B O - 20121209 -9606 641518 LEF1-AS1 - - HGNC:40339 4 4q25 LEF1 antisense RNA 1 miscRNA LEF1-AS1 LEF1 antisense RNA 1 O - 20121230 -9606 641556 RPL36AP6 RP11-380I20.3 RPL36A_12_1002|bA380I20.1 HGNC:23365 9 9q31.2 ribosomal protein L36a pseudogene 6 pseudo RPL36AP6 ribosomal protein L36a pseudogene 6 O - 20121230 -9606 641589 NBPF19 - - HGNC:31999|MIM:614006 1 1q21.1 neuroblastoma breakpoint family, member 19 protein-coding NBPF19 neuroblastoma breakpoint family, member 19 O - 20120318 -9606 641590 NBPF20 - - HGNC:32000|MIM:614007 1 1q21.2 neuroblastoma breakpoint family, member 20 protein-coding NBPF20 neuroblastoma breakpoint family, member 20 O - 20121021 -9606 641613 RPL21P5 - - HGNC:23541 14 14q12 ribosomal protein L21 pseudogene 5 pseudo RPL21P5 ribosomal protein L21 pseudogene 5 O - 20121230 -9606 641614 RPL23AP8 - RPL23AP9|RPL23A_34_1351 HGNC:23543 14 14q13.2 ribosomal protein L23a pseudogene 8 pseudo RPL23AP8 ribosomal protein L23a pseudogene 8 O - 20121230 -9606 641616 RPL9P3 - RPL9_8_1354 HGNC:23555 14 14q13.2 ribosomal protein L9 pseudogene 3 pseudo RPL9P3 ribosomal protein L9 pseudogene 3 O - 20121230 -9606 641638 SNHG6 - HBII-276HG|NCRNA00058|U87HG HGNC:32965|MIM:612215 8 8q13|8q13 small nucleolar RNA host gene 6 (non-protein coding) miscRNA SNHG6 small nucleolar RNA host gene 6 (non-protein coding) O - 20121230 -9606 641648 SNORD87 - HBII-276|U87 HGNC:32746|MIM:612216 8 8q13.1 small nucleolar RNA, C/D box 87 snoRNA SNORD87 small nucleolar RNA, C/D box 87 O - 20121230 -9606 641649 TMEM91 - DSPC3|IFITMD6 HGNC:32393|Ensembl:ENSG00000142046|Vega:OTTHUMG00000168127 19 19q13.2 transmembrane protein 91 protein-coding TMEM91 transmembrane protein 91 O dispanin subfamily C member 3|interferon induced transmembrane protein domain containing 6 20121230 -9606 641654 HEPN1 - - HGNC:34400|MIM:611641|Ensembl:ENSG00000221932|Vega:OTTHUMG00000165939 11 11q24 hepatocellular carcinoma, down-regulated 1 protein-coding HEPN1 hepatocellular carcinoma, down-regulated 1 O HEPACAM opposite strand 1|cancer susceptibility gene HEPN1|putative cancer susceptibility gene HEPN1 protein 20121230 -9606 641695 LOC641695 - - - 12 12q21.2 reticulon 4 interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 641700 ECSCR - ARIA|ECSM2 HGNC:35454|Ensembl:ENSG00000249751|Vega:OTTHUMG00000163240 5 5q31.2 endothelial cell surface expressed chemotaxis and apoptosis regulator protein-coding ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator O apoptosis regulator through modulating IAP expression|endothelial cell-specific chemotaxis regulator|endothelial cell-specific molecule 2 20121230 -9606 641702 FAM138F - F379 HGNC:33581 19 19p13.3 family with sequence similarity 138, member F miscRNA FAM138F family with sequence similarity 138, member F O - 20121230 -9606 641708 LOC641708 - - - 6 6q25.3 hydroxysteroid (17-beta) dehydrogenase 12 pseudogene pseudo - - - - 20121230 -9606 641737 FLJ44124 - - - 7 7p22.3 uncharacterized LOC641737 unknown - - - - 20120622 -9606 641746 LOC641746 - - - 7 7q11.21 glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo - - - - 20121230 -9606 641776 LOC641776 - - - 7 7q11.23 Williams Beuren syndrome chromosome region 19 pseudogene pseudo - - - - 20121230 -9606 641790 RPL31P39 - RPL31_11_842 HGNC:35995 7 7q31.33 ribosomal protein L31 pseudogene 39 pseudo RPL31P39 ribosomal protein L31 pseudogene 39 O - 20121230 -9606 641808 FAM185BP - FAM185B HGNC:21813 7 7q11.23 family with sequence similarity 185, member A pseudogene pseudo FAM185BP family with sequence similarity 185, member B pseudogene O - 20121230 -9606 641842 SLC23A4P - SLC23A4 HGNC:20602 7 7q33 solute carrier family 23 (nucleobase transporters), member 4, pseudogene pseudo SLC23A4P solute carrier family 23 (nucleobase transporters), member 4, pseudogene O - 20121230 -9606 641922 UNC93B2 - UNC93B2P HGNC:13482 7 7p22.1 unc-93 homolog B2 pseudogene (C. elegans) pseudo UNC93B2 unc-93 homolog B2 pseudogene (C. elegans) O - 20121230 -9606 641924 FAM86LP - - HGNC:44099 7 7p22.1 family with sequence similarity 86, member A pseudogene pseudo FAM86LP family with sequence similarity 86, member L, pseudogene O - 20121230 -9606 641928 FLJ16734 - - - 7 7q36.2 uncharacterized LOC641928 unknown - - - - 20120622 -9606 641977 SEPT7P2 - SEPT13|SEPT7B HGNC:32339|MIM:611563 7 7p12.3 septin 7 pseudogene 2 pseudo SEPT7P2 septin 7 pseudogene 2 O - 20121230 -9606 642006 GUSBP10 - - HGNC:42324 7 7p11.2 glucuronidase, beta pseudogene 10 pseudo GUSBP10 glucuronidase, beta pseudogene 10 O - 20121230 -9606 642007 GUSBP12 - - HGNC:42326 7 7p11.2 glucuronidase, beta pseudogene 12 pseudo GUSBP12 glucuronidase, beta pseudogene 12 O - 20121230 -9606 642131 LOC642131 - - - 15 15q11.2 uncharacterized LOC642131 protein-coding - - - - 20121209 -9606 642204 LOC642204 hCG_2042718 - - 4 - ankyrin repeat domain-containing protein 26-like unknown - - - uncharacterized protein LOC642204 20120511 -9606 642236 LOC642236 - - - 9 9q13 FSHD region gene 1 pseudogene pseudo - - - - 20121230 -9606 642249 LOC642249 - - - 12 - uncharacterized LOC642249 pseudo - - - - 20121102 -9606 642259 GAPDHP70 - GAPDHL15|GAPDL15 HGNC:4148 11 11q14.2 glyceraldehyde 3 phosphate dehydrogenase pseudogene 70 pseudo GAPDHP70 glyceraldehyde 3 phosphate dehydrogenase pseudogene 70 O - 20121230 -9606 642262 LOC642262 - - - 5 5q31.2 nuclear receptor coactivator 4 pseudogene pseudo - - - - 20121230 -9606 642265 SPATA31A2 RP11-95H8.1 FAM75A2 HGNC:32002|Ensembl:ENSG00000204848|Vega:OTTHUMG00000013563 9 9p13.1 SPATA31 subfamily A, member 2 protein-coding SPATA31A2 SPATA31 subfamily A, member 2 O family with sequence similarity 75, member A2|protein FAM75A2 20121230 -9606 642273 FAM110C - - HGNC:33340|MIM:611395 2 2p25.3 family with sequence similarity 110, member C protein-coding FAM110C family with sequence similarity 110, member C O protein FAM110C 20121230 -9606 642280 ZNF876P - - HGNC:32472 4 4p16.3 zinc finger protein 876, pseudogene pseudo ZNF876P zinc finger protein 876, pseudogene O - 20121230 -9606 642288 LOC642288 - - - 15 15q25.2 chondroitin sulfate proteoglycan 4 pseudogene pseudo - - - - 20121209 -9606 642290 SLC25A1P5 - - HGNC:43849 19 19q11 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 5 pseudo SLC25A1P5 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 5 O - 20121230 -9606 642305 MAPRE1P2 - - HGNC:37761 4 4p15.1 MAPRE1 pseudogene 2 pseudo MAPRE1P2 MAPRE1 pseudogene 2 O - 20121230 -9606 642306 RPL19P15 - RPL19_10_1014 HGNC:35920 9 9q34.12 ribosomal protein L19 pseudogene 15 pseudo RPL19P15 ribosomal protein L19 pseudogene 15 O - 20121230 -9606 642311 LOC642311 - - - 15 15q11.1 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121230 -9606 642316 FLJ43763 - - - 6 6p25.3 uncharacterized LOC642316 unknown - - - - 20121230 -9606 642317 GAPDHP15 XXbac-BPG55C20.7 GAPDH-Lp|GAPDP15|b55C20.4 HGNC:13950 6 6p11.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene 15 pseudo GAPDHP15 glyceraldehyde-3-phosphate dehydrogenase pseudogene 15 O - 20121230 -9606 642319 TAGLN2P2 - - HGNC:31039 8 8p12 transgelin 2 pseudogene 2 pseudo TAGLN2P2 transgelin 2 pseudogene 2 O - 20121230 -9606 642320 RPL36AP31 - RPL36A_13_923 HGNC:36066 8 8q21.3 ribosomal protein L36a pseudogene 31 pseudo RPL36AP31 ribosomal protein L36a pseudogene 31 O - 20121230 -9606 642325 LOC642325 - - - 15 15q25.2 golgin A6 family, member A pseudogene pseudo - - - - 20121209 -9606 642326 CCNYL3 - - HGNC:33206 16 16p11.2 cyclin Y-like 3 protein-coding CCNYL3 cyclin Y-like 3 O Putative cyclin-Y-like protein 3 20121102 -9606 642335 LOC642335 - - - 6 6p25.3 uncharacterized LOC642335 unknown - - - - 20120511 -9606 642337 FTLP17 - - HGNC:37967 1 1p21.1 ferritin, light polypeptide pseudogene 17 pseudo FTLP17 ferritin, light polypeptide pseudogene 17 O - 20121230 -9606 642345 MIR4500HG hCG_1795283 - HGNC:42773 13 13q31.2 MIR4500 host gene (non-protein coding) miscRNA MIR4500HG MIR4500 host gene (non-protein coding) O - 20121230 -9606 642355 LOC642355 tcag7.1110 - - 7 7q34 nucleoside diphosphate kinase, mitochondrial-like pseudo - - - - 20121230 -9606 642357 EEF1GP5 - - HGNC:44560 X Xq23 eukaryotic translation elongation factor 1 gamma pseudogene 5 pseudo EEF1GP5 eukaryotic translation elongation factor 1 gamma pseudogene 5 O - 20121230 -9606 642361 LOC642361 - - - 10 10q22.3 uncharacterized LOC642361 miscRNA - - - - 20121230 -9606 642366 LOC642366 - - - 5 5q11.1 uncharacterized LOC642366 miscRNA - - - - 20121230 -9606 642373 LOC642373 - - - 9 9p13.1 contactin associated protein-like 3B pseudogene pseudo - - - - 20121230 -9606 642381 LOC642381 - - - 4 4q13.2 speckle-type POZ protein-like pseudogene pseudo - - - - 20121230 -9606 642389 LOC642389 - - - 9 9p13.1 RNA binding motif protein 17 pseudogene pseudo - - - - 20121230 -9606 642394 ADARB2-AS1 RP11-466B20.1 C10orf109|NCRNA00168|bA466B20.1 HGNC:23299 10 10p15.3 ADARB2 antisense RNA 1 miscRNA ADARB2-AS1 ADARB2 antisense RNA 1 O - 20121230 -9606 642395 PSPC1P1 RP11-408E5.7 - HGNC:42033 13 13q12.11 paraspeckle component 1 pseudogene 1 pseudo PSPC1P1 paraspeckle component 1 pseudogene 1 O - 20121230 -9606 642402 LOC642402 - - - 15 15q25.2 golgin A6 family, member A pseudogene pseudo - - - - 20121230 -9606 642413 CTSL1P6 RP11-479O17.6 CTSLL6|bA479O17.1 HGNC:23611 10 10q22.3 cathepsin L1 pseudogene 6 pseudo CTSL1P6 cathepsin L1 pseudogene 6 O - 20121230 -9606 642414 LOC642414 - - - 11 11q14.3 tripartite motif containing 64B pseudogene pseudo - - - - 20121209 -9606 642422 LOC642422 - - - 10 10p15.3 uncharacterized LOC642422 unknown - - - - 20121230 -9606 642423 LOC642423 - - - 15 15q25.3 uncharacterized LOC642423 pseudo - - - - 20121230 -9606 642424 LOC642424 - - - 10 10q11.21 Ig kappa chain V-I region Walker-like other - - - - 20121209 -9606 642425 TRIM53BP - TRIM53B|TRIM53L|TRIM53L1|TRIM80P HGNC:37144 11 11q14.3 tripartite motif containing 53B, pseudogene pseudo TRIM53BP tripartite motif containing 53B, pseudogene O - 20121230 -9606 642426 LOC642426 - - - 14 14q11.1 uncharacterized LOC642426 miscRNA - - - - 20121230 -9606 642441 LOC642441 - - - 1 1q21.2 uncharacterized LOC642441 protein-coding - - - - 20121209 -9606 642443 ADH5P4 - ADH5B|RCADH5|bA707M13.2 HGNC:21377 6 6q12 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 4 pseudo ADH5P4 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 4 O - 20121230 -9606 642446 TRIM64B - - HGNC:37147|Ensembl:ENSG00000189253|Vega:OTTHUMG00000167638 11 11q14.3 tripartite motif containing 64B protein-coding TRIM64B tripartite motif containing 64B O putative tripartite motif-containing protein 64B|tripartite motif-containing 64B 20121230 -9606 642448 KRT18P23 - - HGNC:33392 22 22q13.31 keratin 18 pseudogene 23 pseudo KRT18P23 keratin 18 pseudogene 23 O - 20121230 -9606 642451 RPL7P46 - RPL7_26_1472 HGNC:36706 16 16p13.13 ribosomal protein L7 pseudogene 46 pseudo RPL7P46 ribosomal protein L7 pseudogene 46 O - 20121230 -9606 642452 LOC642452 - - - 16 16q24.3 uncharacterized LOC642452 unknown - - - - 20121230 -9606 642460 ANKRD30BP1 - ANKRD30BP|C21orf110|PRED4 HGNC:19722 21 21q11.2 ankyrin repeat domain 30B pseudogene 1 pseudo ANKRD30BP1 ankyrin repeat domain 30B pseudogene 1 O - 20121230 -9606 642461 LOC642461 - - - 8 8q21.3 isoleucyl-tRNA synthetase, mitochondrial-like pseudo - - - - 20121230 -9606 642474 LOC642474 - - - 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene pseudo - - - - 20121230 -9606 642475 MROH6 - C8orf73 HGNC:27814|Ensembl:ENSG00000204839|Vega:OTTHUMG00000165164 8 8q24.3 maestro heat-like repeat family member 6 protein-coding MROH6 maestro heat-like repeat family member 6 O putative uncharacterized protein C8orf73 20121230 -9606 642477 FLJ39632 - - - 14 14q11.2 uncharacterized LOC642477 unknown - - - - 20121209 -9606 642484 FLJ45743 - - - 18 18q21.2 uncharacterized LOC642484 unknown - - - - 20121230 -9606 642487 LOC642487 - - - 3 3p14.1 H1 histone family, member O, oocyte-specific pseudogene pseudo - - - - 20121230 -9606 642489 FKBP1C RP11-184C23.2 bA184C23.2 HGNC:21376|HPRD:16899 6 6q12 FK506 binding protein 1C pseudo FKBP1C FK506 binding protein 1C O - 20121230 -9606 642490 LOC642490 - - - 9 9p13.1 S-phase kinase-associated protein 1 pseudogene pseudo - - - - 20121230 -9606 642493 RPL29P25 - RPL29_15_1277 HGNC:37039 12 12q24.11 ribosomal protein L29 pseudogene 25 pseudo RPL29P25 ribosomal protein L29 pseudogene 25 O - 20121230 -9606 642496 LOC642496 - - - 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene pseudo - - - - 20121230 -9606 642502 LOC642502 hCG_1776980 - - 17 17p13.3 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa pseudogene pseudo - - - - 20121230 -9606 642513 LOC642513 - - - 8 8p12 potassium channel tetramerisation domain containing 9 pseudogene pseudo - - - - 20121230 -9606 642515 LOC642515 - - - 9 9q34.13 proline-rich transmembrane protein 1-like protein-coding - - - - 20120511 -9606 642517 AGAP9 - AGAP-9|CTGLF6|bA301J7.2 HGNC:23463|Ensembl:ENSG00000198035|Vega:OTTHUMG00000018141 10 10q11.22 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 protein-coding AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 O arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9|centaurin, gamma-like family, member 6|centaurin-gamma-like family member 6 20121230 -9606 642521 C1DP3 - bA369J21.2 HGNC:31661 10 10q22.3 C1D nuclear receptor corepressor pseudogene 3 pseudo C1DP3 C1D nuclear receptor corepressor pseudogene 3 O - 20121230 -9606 642531 RPL36P11 hCG_1782906 RPL36_1_620 HGNC:36271 5 5q31.3 ribosomal protein L36 pseudogene 11 pseudo RPL36P11 ribosomal protein L36 pseudogene 11 O - 20121230 -9606 642533 LOC642533 - - - 16 16q24.3 uncharacterized LOC642533 unknown - - - - 20121230 -9606 642538 C1DP2 - bA369J21.3 HGNC:31660 10 10q22.3 C1D nuclear receptor corepressor pseudogene 2 pseudo C1DP2 C1D nuclear receptor corepressor pseudogene 2 O - 20121230 -9606 642545 ATP5A1P1 CTD-2340F8.2 ATP5AP1 HGNC:827 9 9p12 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 1 pseudo ATP5A1P1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 1 O - 20121230 -9606 642546 HK2P1 - HK2P HGNC:4924 X Xq21.1 hexokinase 2 pseudogene 1 pseudo HK2P1 hexokinase 2 pseudogene 1 O - 20121230 -9606 642550 LOC642550 - - - 12 12q21.2 v-ral simian leukemia viral oncogene homolog A (ras related) pseudogene pseudo - - - - 20121230 -9606 642554 LOC642554 - - - 6 6q12 leucine rich repeat containing 59 pseudogene pseudo - - - - 20121230 -9606 642555 LOC642555 - - - 9 9p12 peptidyl-prolyl cis-trans isomerase FKBP4-like pseudo - - - - 20121209 -9606 642559 POU5F1P3 - OTF3L|POU5F1L|POU5FLC12 HGNC:9222 12 12p13.31 POU class 5 homeobox 1 pseudogene 3 pseudo POU5F1P3 POU class 5 homeobox 1 pseudogene 3 O - 20121230 -9606 642569 TRIM53AP - TRIM53|TRIM53P|TRIM80P HGNC:19025 11 11q14.3 tripartite motif containing 53A, pseudogene pseudo TRIM53AP tripartite motif containing 53A, pseudogene O - 20121230 -9606 642574 LOC642574 - - - 8 8q24.3 IQ motif and ankyrin repeat domain-containing protein LOC642574 protein-coding - - - - 20120511 -9606 642579 LOC642579 - - - 11 11q14.3 tripartite motif containing 64B pseudogene pseudo - - - - 20121230 -9606 642580 HSPA8P14 - - HGNC:44929 12 12q24.12 heat shock 70kDa protein 8 pseudogene 14 pseudo HSPA8P14 heat shock 70kDa protein 8 pseudogene 14 O - 20121230 -9606 642585 VDAC1P1 - VDAC1P HGNC:12671 X Xq21.1 voltage-dependent anion channel 1 pseudogene 1 pseudo VDAC1P1 voltage-dependent anion channel 1 pseudogene 1 O - 20121230 -9606 642587 MIR205HG - LINC00510 HGNC:43562 1 1q32.2 MIR205 host gene (non-protein coding) protein-coding MIR205HG MIR205 host gene (non-protein coding) O NPC-A-5|long intergenic non-protein coding RNA 510|uncharacterized protein LOC642587 20121230 -9606 642590 LOC642590 - - - 6 6q13 spermine synthase pseudogene pseudo - - - - 20121230 -9606 642592 EIF5AP4 RP11-36D19.5 EIF5AL3 HGNC:31442 10 10q23.1 eukaryotic translation initiation factor 5A pseudogene 4 pseudo EIF5AP4 eukaryotic translation initiation factor 5A pseudogene 4 O - 20121230 -9606 642597 C18orf42 - - HGNC:28285|Ensembl:ENSG00000231824|Vega:OTTHUMG00000178457 18 18p11.31 chromosome 18 open reading frame 42 protein-coding C18orf42 chromosome 18 open reading frame 42 O putative uncharacterized protein C18orf42 20121230 -9606 642612 TRIM49C - TRIM49L2 HGNC:38877|Ensembl:ENSG00000204449|Vega:OTTHUMG00000167653 11 11q14.3 tripartite motif containing 49C protein-coding TRIM49C tripartite motif containing 49C O tripartite motif containing 49-like 2|tripartite motif-containing protein 49-like protein 2|tripartite motif-containing protein 49C 20121230 -9606 642614 LOC642614 - - - 16 16p11.1 chromosome 2 open reading frame 69 pseudogene pseudo - - - - 20121230 -9606 642620 LOC642620 hCG_1999814 - - 7 7q36.3 uncharacterized LOC642620 protein-coding - - - - 20120511 -9606 642623 UBTFL1 - C11orf27|HMGPI HGNC:14533|MIM:613696 11 11q14.3 upstream binding transcription factor, RNA polymerase I-like 1 protein-coding UBTFL1 upstream binding transcription factor, RNA polymerase I-like 1 O putative upstream-binding factor 1-like protein 1|upstream-binding factor 1-like protein 1 20121230 -9606 642627 MYL6P4 - - HGNC:37813 7 7q34 myosin, light chain 6 pseudogene 4 pseudo MYL6P4 myosin, light chain 6 pseudogene 4 O - 20121230 -9606 642629 SPATA31A4 - FAM75A4 HGNC:32004|Ensembl:ENSG00000234214|Vega:OTTHUMG00000066731 9 9p12 SPATA31 subfamily A, member 4 protein-coding SPATA31A4 SPATA31 subfamily A, member 4 O family with sequence similarity 75, member A4|protein FAM75A4 20121230 -9606 642631 TSPY15P - - HGNC:37474 Y Yp11.2 testis specific protein, Y-linked 15, pseudogene pseudo TSPY15P testis specific protein, Y-linked 15, pseudogene O - 20121230 -9606 642633 LOC642633 - - - 22 22q11.21 uncharacterized LOC642633 miscRNA - - - - 20121230 -9606 642635 LOC642635 - - - 2 2q23.3 tubulin, alpha 4a pseudogene pseudo - - - - 20121230 -9606 642636 RAD21L1 RP11-314N13.7 RAD21L|dJ545L17.2 HGNC:16271|Ensembl:ENSG00000244588|Vega:OTTHUMG00000031664 20 20p13 RAD21-like 1 (S. pombe) protein-coding RAD21L1 RAD21-like 1 (S. pombe) O double-strand-break repair protein rad21-like protein 1 20121230 -9606 642641 RPSAP54 RP11-569O4.5 RPSA_26_1300 HGNC:36373 13 13q12.11 ribosomal protein SA pseudogene 54 pseudo RPSAP54 ribosomal protein SA pseudogene 54 O - 20121230 -9606 642643 LOC642643 - - Ensembl:ENSG00000182824 22 22q11.21 uncharacterized LOC642643 protein-coding - - - - 20121230 -9606 642648 LOC642648 - - - 22 22q13.31 uncharacterized LOC642648 unknown - - - - 20120508 -9606 642652 LOC642652 - - - 16 16p11.1 retinoic acid receptor responder (tazarotene induced) 2 pseudogene pseudo - - - - 20121230 -9606 642658 SCXB - bHLHa48 HGNC:32322|Ensembl:ENSG00000187786 8 8q24.3 scleraxis homolog B (mouse) protein-coding SCXB scleraxis homolog B (mouse) O basic helix-loop-helix transcription factor scleraxis|class A basic helix-loop-helix protein 41|class A basic helix-loop-helix protein 48 20121209 -9606 642659 LOC642659 - - - 16 16q12.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 642661 LOC642661 - - - 14 14q11.2 translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 642663 LOC642663 - - - 7 7p12.1 protein capicua homolog pseudo - - - - 20121230 -9606 642669 LOC642669 - - - 14 14q11.2 chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121230 -9606 642677 LOC642677 - - - 15 15q25.2 family with sequence similarity 154, member B pseudogene pseudo - - - - 20121230 -9606 642683 LOC642683 - - - 16 16p11.1 kinesin family member 18B pseudogene pseudo - - - - 20121230 -9606 642687 RPS11P7 - RPS11_4_1771 HGNC:36724 X Xp11.4 ribosomal protein S11 pseudogene 7 pseudo RPS11P7 ribosomal protein S11 pseudogene 7 O - 20121230 -9606 642691 FLJ37786 - - - 1 1q21 uncharacterized LOC642691 unknown - - - - 20121209 -9606 642692 LOC642692 - - - 2 2q37.2 centrosomal protein 19kDa pseudogene pseudo - - - - 20121230 -9606 642696 FLJ32790 hCG_1983896 - - 16 16p13.13 hCG1983896 unknown - - - - 20121230 -9606 642721 CBX3P6 - - HGNC:42878 2 2q24.1 chromobox homolog 3 pseudogene 6 pseudo CBX3P6 chromobox homolog 3 pseudogene 6 O - 20121230 -9606 642730 LOC642730 - - - 8 8q21.3 uncharacterized LOC642730 protein-coding - - - - 20120318 -9606 642737 SETP22 - - HGNC:42941 5 5q15 SET pseudogene 22 pseudo SETP22 SET pseudogene 22 O - 20121230 -9606 642738 RPL21P69 - RPL21_27_774 HGNC:36753 6 6q25.3 ribosomal protein L21 pseudogene 69 pseudo RPL21P69 ribosomal protein L21 pseudogene 69 O - 20121230 -9606 642740 RPL9P11 - RPL9_1_9 HGNC:35621 1 1p36.22 ribosomal protein L9 pseudogene 11 pseudo RPL9P11 ribosomal protein L9 pseudogene 11 O - 20121230 -9606 642741 RPL3P7 - RPL3_3_732 HGNC:36797 6 6q21 ribosomal protein L3 pseudogene 7 pseudo RPL3P7 ribosomal protein L3 pseudogene 7 O - 20121230 -9606 642746 EIF4A1P9 - - HGNC:37928 17 17p13.3 eukaryotic translation initiation factor 4A1 pseudogene 9 pseudo EIF4A1P9 eukaryotic translation initiation factor 4A1 pseudogene 9 O - 20121230 -9606 642757 FLJ32756 - - - 22 22q13.31 uncharacterized LOC642757 unknown - - - - 20121230 -9606 642762 ABCD1P5 hCG_2042779 - HGNC:42662 2 2p11.1 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 5 pseudo ABCD1P5 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 5 O - 20121230 -9606 642776 LOC642776 - - - X Xq23 uncharacterized LOC642776 miscRNA - - - - 20120511 -9606 642778 LOC642778 - - Ensembl:ENSG00000224712|Vega:OTTHUMG00000166262 16 16p13.11 nuclear pore complex-interacting protein-like 1-like protein-coding - - - - 20121209 -9606 642791 LOC642791 - - - 11 11q14.3 eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 642796 TSPY18P - - HGNC:37725 Y Yp11.2 testis specific protein, Y-linked 18, pseudogene pseudo TSPY18P testis specific protein, Y-linked 18, pseudogene O - 20121230 -9606 642797 DNAH10OS - - HGNC:37121 12 12q24.31 dynein, axonemal, heavy chain 10 opposite strand unknown DNAH10OS dynein, axonemal, heavy chain 10 opposite strand O - 20121021 -9606 642799 LOC642799 - - Ensembl:ENSG00000254852|Vega:OTTHUMG00000166264 16 16p13.11 nuclear pore complex-interacting protein-like 1-like protein-coding - - - - 20121230 -9606 642802 CCDC137P - - HGNC:33459 3 3p13 coiled-coil domain containing 137 pseudogene pseudo CCDC137P coiled-coil domain containing 137 pseudogene O - 20121230 -9606 642812 API5P1 - API5L1 HGNC:595 X Xq24 API5 pseudogene 1 pseudo API5P1 API5 pseudogene 1 O - 20121230 -9606 642817 LOC642817 - - - 6 6p25.1 uncharacterized LOC642817 unknown - - - - 20121017 -9606 642818 ST13P21 - - HGNC:38864 1 1p13.3 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 21 pseudo ST13P21 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 21 O - 20121230 -9606 642819 ZNF487P RP11-517P14.1 KRBO1|ZNF487 HGNC:23488 10 10q11.21 zinc finger protein 487, pseudogene pseudo ZNF487P zinc finger protein 487, pseudogene O - 20121230 -9606 642826 BMS1P6 - BMS1LP6|bA302K17.2 HGNC:23654|Vega:OTTHUMG00000018142 10 10q11.22 BMS1 pseudogene 6 pseudo BMS1P6 BMS1 pseudogene 6 O - 20121230 -9606 642828 RPL6P10 - RPL6_9_488 HGNC:36575 4 4q13.1 ribosomal protein L6 pseudogene 10 pseudo RPL6P10 ribosomal protein L6 pseudogene 10 O - 20121230 -9606 642840 MEP1AP1 - MEP1AL1 HGNC:7016 9 9p12 meprin A, alpha pseudogene 1 pseudo MEP1AP1 meprin A, alpha pseudogene 1 O - 20121209 -9606 642843 CPSF4L - - HGNC:33632|Ensembl:ENSG00000187959|Vega:OTTHUMG00000132640 17 17q25.1 cleavage and polyadenylation specific factor 4-like protein-coding CPSF4L cleavage and polyadenylation specific factor 4-like O putative cleavage and polyadenylation specificity factor subunit 4-like protein 20121230 -9606 642846 LOC642846 - - - 12 12p13.31 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like miscRNA - - - - 20121230 -9606 642852 LOC642852 - - - 21 21q22.3 uncharacterized LOC642852 miscRNA - - - - 20121230 -9606 642862 LOC642862 - - - 10 10q11.22 Ras homolog enriched in brain pseudogene pseudo - - - - 20121230 -9606 642864 SRG7 - - - 1 1p13.3 spermatogenesis-related protein 7 miscRNA - - - - 20121230 -9606 642869 SETP4 hCG_1644608 - HGNC:42923 X Xq21.1 SET pseudogene 4 pseudo SETP4 SET pseudogene 4 O - 20121230 -9606 642879 SMARCE1P4 - - HGNC:39735 8 8p11.23 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 4 pseudo SMARCE1P4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 4 O - 20121230 -9606 642888 CNN2P2 - - HGNC:39527 9 9p12 calponin 2 pseudogene 2 pseudo CNN2P2 calponin 2 pseudogene 2 O - 20121230 -9606 642889 FLJ16423 - - - X Xq28 uncharacterized LOC642889 unknown - - - - 20120622 -9606 642890 LOC642890 - - - 11 11q12.1 N(alpha)-acetyltransferase 50, NatE catalytic subunit pseudogene pseudo - - - - 20121230 -9606 642891 CHL1-AS2 - - HGNC:40147 3 3p26.3 CHL1 antisense RNA 2 protein-coding CHL1-AS2 CHL1 antisense RNA 2 O CHL1 antisense RNA 2 (non-protein coding) 20121221 -9606 642892 RPS29P3 - RPS29_7_451|bcm2758 HGNC:31363 3 3q29 ribosomal protein S29 pseudogene 3 pseudo RPS29P3 ribosomal protein S29 pseudogene 3 O - 20121230 -9606 642897 LOC642897 - - - 11 11q21 N-6 adenine-specific DNA methyltransferase 1 (putative) pseudogene pseudo - - - - 20121230 -9606 642907 MKI67IPP8 - - HGNC:44956 15 15q25.3 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 8 pseudo MKI67IPP8 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 8 O - 20121230 -9606 642909 LOC642909 - - - 5 5q15 C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 642924 LINC00535 - - HGNC:43644 8 8q22.1 long intergenic non-protein coding RNA 535 miscRNA LINC00535 long intergenic non-protein coding RNA 535 O - 20121230 -9606 642929 LOC642929 - - - 9 9p11.2 general transcription factor II, i pseudogene pseudo - - - - 20121230 -9606 642934 LOC642934 - - - 10 10q23.1 uncharacterized LOC642934 unknown - - - - 20120511 -9606 642935 LOC642935 - - - 15 15q25.3 ADAM metallopeptidase with thrombospondin type 1 motif, 7 pseudogene pseudo - - - - 20121209 -9606 642938 FAM196A - C10orf141 HGNC:33859|Ensembl:ENSG00000188916|Vega:OTTHUMG00000019248 10 10q26.2 family with sequence similarity 196, member A protein-coding FAM196A family with sequence similarity 196, member A O protein FAM196A 20121230 -9606 642943 LOC642943 RP11-526D8.7 - - 9 9q22.31 SPATA31 subfamily A, member 4 pseudogene pseudo - - - - 20121230 -9606 642946 FLVCR1-AS1 - LQK1|NCRNA00292 HGNC:39077|MIM:610864 1 1q32.3 FLVCR1 antisense RNA 1 (head to head) miscRNA FLVCR1-AS1 FLVCR1 antisense RNA 1 (head to head) O - 20121230 -9606 642947 LOC642947 - - - 9 9q21.13 uncharacterized LOC642947 unknown - - - - 20120710 -9606 642952 SNX18P2 RP11-526D8.8 - HGNC:39610 9 9q22.31 sorting nexin 18 pseudogene 2 pseudo SNX18P2 sorting nexin 18 pseudogene 2 O - 20121230 -9606 642954 RBBP4P1 - RBBP4P HGNC:42368 5 5p15.2 retinoblastoma binding protein 4 pseudogene 1 pseudo RBBP4P1 retinoblastoma binding protein 4 pseudogene 1 O - 20121230 -9606 642956 FABP5P9 - FABP5L9 HGNC:31064 15 15q25.3 fatty acid binding protein 5 pseudogene 9 pseudo FABP5P9 fatty acid binding protein 5 pseudogene 9 O - 20121230 -9606 642958 LOC642958 - - - 4 4q13.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 642959 ALOX15P2 - - HGNC:39027 9 9q22.31 arachidonate 15-lipoxygenase pseudogene 2 pseudo ALOX15P2 arachidonate 15-lipoxygenase pseudogene 2 O - 20121230 -9606 642968 FAM163B - C9orf166 HGNC:33277|Ensembl:ENSG00000196990|Vega:OTTHUMG00000159557 9 9q34.2 family with sequence similarity 163, member B protein-coding FAM163B family with sequence similarity 163, member B O protein FAM163B 20121230 -9606 642969 LOC642969 hCG_2015138 - - 12 12q22 phosphoglycerate mutase 1 (brain) pseudogene pseudo - - - - 20121230 -9606 642975 LOC642975 - - - 11 11q12.1 transmembrane protein 230 pseudogene pseudo - - - - 20121230 -9606 642976 GRIK1-AS1 - C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 HGNC:16458 21 21q22.11 GRIK1 antisense RNA 1 miscRNA GRIK1-AS1 GRIK1 antisense RNA 1 O - 20121230 -9606 642980 LOC642980 - - - X Xq28 uncharacterized LOC642980 unknown - - - - 20120622 -9606 642987 TMEM232 - - HGNC:37270|Ensembl:ENSG00000186952|Vega:OTTHUMG00000163297 5 5q22.1 transmembrane protein 232 protein-coding TMEM232 transmembrane protein 232 O - 20121230 -9606 642996 NFE2L3P1 - - HGNC:22278 18 18q21.32 nuclear factor (erythroid-derived 2)-like 3 pseudogene 1 pseudo NFE2L3P1 nuclear factor (erythroid-derived 2)-like 3 pseudogene 1 O - 20121230 -9606 643001 DUX4L17 - DUXY3 HGNC:37717 Y Yq11.21 double homeobox 4 like 17 pseudo DUX4L17 double homeobox 4 like 17 O - 20121230 -9606 643003 RPS26P28 hCG_1989844 RPS26_11_544 HGNC:36149 5 5p15.1 ribosomal protein S26 pseudogene 28 pseudo RPS26P28 ribosomal protein S26 pseudogene 28 O - 20121230 -9606 643007 RPL36AP8 hCG_1787519 RPL36A_20_1424 HGNC:30973 15 15q14 ribosomal protein L36a pseudogene 8 pseudo RPL36AP8 ribosomal protein L36a pseudogene 8 O - 20121230 -9606 643008 SMIM5 - C17orf109|PP12104 HGNC:40030|Ensembl:ENSG00000204323|Vega:OTTHUMG00000167882 17 17q25.1 small integral membrane protein 5 protein-coding SMIM5 small integral membrane protein 5 O uncharacterized protein C17orf109 20121230 -9606 643014 LOC643014 - - - 4 4q13.3 coiled-coil domain containing 90B pseudogene pseudo - - - - 20121230 -9606 643015 LOC643015 - - - X Xq28 nucleolar protein 11 pseudogene pseudo - - - - 20121230 -9606 643031 MTND5P10 - - HGNC:42272 5 5q21.1 MT-ND5 pseudogene 10 pseudo MTND5P10 MT-ND5 pseudogene 10 O - 20121230 -9606 643034 DUX4L19 - DUXY4 HGNC:37718 Y Yq11.21 double homeobox 4 like 19 pseudo DUX4L19 double homeobox 4 like 19 O - 20121230 -9606 643036 SLED1 UNQ9368 - - 4 4q35.1 proteoglycan 3 pseudogene pseudo - - - - 20121230 -9606 643037 LOC643037 - - - 11 11q21 uncharacterized LOC643037 protein-coding - - - uncharacterized protein LOC643037 20121230 -9606 643043 LOC643043 - - - X Xp11.4 protein shisa-5-like pseudo - - - - 20121209 -9606 643050 ACTR3BP1 - - HGNC:37724 Y Yq11.21 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 1 pseudo ACTR3BP1 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 1 O - 20121230 -9606 643058 LOC643058 - - - 12 12q13.11 interferon induced transmembrane protein 3 pseudogene pseudo - - - - 20121230 -9606 643067 LOC643067 - - - 6 6q13 HORMA domain containing 1 pseudogene pseudo - - - - 20121230 -9606 643072 LOC643072 - - - 2 2q24.2 uncharacterized LOC643072 unknown - - - - 20121230 -9606 643085 LOC643085 - - - 2 2q11.1 uncharacterized LOC643085 unknown - - - - 20121102 -9606 643101 RPL26P22 - RPL26_5_860 HGNC:36244 7 7q35 ribosomal protein L26 pseudogene 22 pseudo RPL26P22 ribosomal protein L26 pseudogene 22 O - 20121230 -9606 643115 KRT223P - - HGNC:32968 17 17q21.2 keratin 223 pseudogene pseudo KRT223P keratin 223 pseudogene O - 20121230 -9606 643118 LOC643118 - - - 11 11q21 serine/arginine-rich splicing factor 2 pseudogene pseudo - - - - 20121230 -9606 643126 TRIM51JP - - HGNC:43978 2 2q11.1 tripartite motif-containing 51J, pseudogene pseudo TRIM51JP tripartite motif-containing 51J, pseudogene O - 20121230 -9606 643136 ZC3H11B - ZC3HDC11B HGNC:25659 1 1q41 zinc finger CCCH-type containing 11B pseudogene pseudo ZC3H11B zinc finger CCCH-type containing 11B pseudogene O - 20121230 -9606 643155 SMIM15 - C5orf43 HGNC:33861|Ensembl:ENSG00000188725|Vega:OTTHUMG00000162241 5 5q12.1 small integral membrane protein 15 protein-coding SMIM15 small integral membrane protein 15 O UPF0542 protein C5orf43 20121230 -9606 643157 MEP1AP4 - - HGNC:39138 9 9p11.2 meprin A, alpha pseudogene 4 pseudo MEP1AP4 meprin A, alpha pseudogene 4 O - 20121230 -9606 643159 ATF4P3 - ATF4C HGNC:788 17 17q25.1 activating transcription factor 4 pseudogene 3 pseudo ATF4P3 activating transcription factor 4 pseudogene 3 O - 20121230 -9606 643160 CYMP RP11-470L19.3 - HGNC:2588|MIM:118943 1 1p13.3 chymosin pseudogene pseudo CYMP chymosin pseudogene O - 20121230 -9606 643161 FAM25A RP11-96C23.2 FAM25B|FAM25C|FAM25G|bA96C23.5 HGNC:23436|Ensembl:ENSG00000188100|Vega:OTTHUMG00000018664 10 10q23.2 family with sequence similarity 25, member A protein-coding FAM25A family with sequence similarity 25, member A O protein FAM25|protein FAM25A 20121230 -9606 643162 DKFZP779L1853 - - - 12 12q13.11 uncharacterized LOC643162 unknown - - - - 20120909 -9606 643167 LOC643167 - - - X Xp11.3 RNA binding motif protein 39 pseudogene pseudo - - - - 20121230 -9606 643168 LOC643168 - - - 7 7p11.2 Rho GTPase activating protein 5 pseudogene pseudo - - - - 20121230 -9606 643171 GGT4P - - HGNC:33207 13 - gamma-glutamyltransferase 4 pseudogene pseudo GGT4P gamma-glutamyltransferase 4 pseudogene O - 20121230 -9606 643172 LOC643172 - - - 20 20q12 neurofilament, heavy polypeptide pseudogene pseudo - - - - 20121230 -9606 643180 CCT6P3 - CCT6-3P HGNC:35137 7 7q11.21 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3 pseudo CCT6P3 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3 O - 20121230 -9606 643181 FADS2P1 - - HGNC:43618 11 11q12.1 fatty acid desaturase 2 pseudogene 1 pseudo FADS2P1 fatty acid desaturase 2 pseudogene 1 O - 20121230 -9606 643182 UBTFL8 - - HGNC:44476 3 3p26.1 upstream binding transcription factor, RNA polymerase I-like 8 (pseudogene) pseudo UBTFL8 upstream binding transcription factor, RNA polymerase I-like 8 (pseudogene) O - 20121230 -9606 643193 CALM2P4 RP11-295B17.4 - HGNC:39661 13 13q32.2 calmodulin 2 pseudogene 4 pseudo CALM2P4 calmodulin 2 pseudogene 4 O - 20121230 -9606 643198 RBPJP6 - - HGNC:37486 9 9p11.2 RBPJ pseudogene 6 pseudo RBPJP6 RBPJ pseudogene 6 O - 20121209 -9606 643199 TAB3P1 - - HGNC:37723 Y Yq11.221 TGF-beta activated kinase 1/MAP3K7 binding protein 3 pseudogene 1 pseudo TAB3P1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 pseudogene 1 O - 20121230 -9606 643201 LOC643201 - - - 5 5q35.2 centrosomal protein 192kDa pseudogene pseudo - - - - 20121230 -9606 643205 RPL36P8 - RPL36_4_490 HGNC:36493 4 4q21.1 ribosomal protein L36 pseudogene 8 pseudo RPL36P8 ribosomal protein L36 pseudogene 8 O - 20121230 -9606 643210 FLJ40292 - - - 9 9q34.3 uncharacterized LOC643210 miscRNA - - - - 20121230 -9606 643219 LOC643219 - - - 2 2q11.1 glycerol-3-phosphate acyltransferase 2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 643220 RPL3P6 - RPL3_2_568 HGNC:36395 5 5q12.1 ribosomal protein L3 pseudogene 6 pseudo RPL3P6 ribosomal protein L3 pseudogene 6 O - 20121230 -9606 643224 TUBBP5 - - HGNC:23674 9 9q34.3 tubulin, beta pseudogene 5 pseudo TUBBP5 tubulin, beta pseudogene 5 O - 20121230 -9606 643226 GRXCR2 - - HGNC:33862|Ensembl:ENSG00000204928|Vega:OTTHUMG00000163417 5 5q32 glutaredoxin, cysteine rich 2 protein-coding GRXCR2 glutaredoxin, cysteine rich 2 O GRXCR1-like protein|Glutaredoxin domain-containing cysteine-rich protein 1-like protein|glutaredoxin domain-containing cysteine-rich protein 2 20121230 -9606 643228 GAPDHP30 - - HGNC:37782 8 8q22.1 glyceraldehyde 3 phosphate dehydrogenase pseudogene 30 pseudo GAPDHP30 glyceraldehyde 3 phosphate dehydrogenase pseudogene 30 O - 20121230 -9606 643232 NRBF2P3 - - HGNC:44606 1 1p13.3 nuclear receptor binding factor 2 pseudogene 3 pseudo NRBF2P3 nuclear receptor binding factor 2 pseudogene 3 O - 20121230 -9606 643236 TMEM72 RP11-285G1.3 C10orf127|KSP37|bA285G1.3 HGNC:31658|Ensembl:ENSG00000187783|Vega:OTTHUMG00000018067 10 10q11.21 transmembrane protein 72 protein-coding TMEM72 transmembrane protein 72 O kidney-specific secretory protein of 37 kDa 20121230 -9606 643244 RDXP1 - - HGNC:9945 11 11p15.4 radixin pseudogene 1 pseudo RDXP1 radixin pseudogene 1 O - 20121230 -9606 643246 MAP1LC3B2 - ATG8G HGNC:34390|Ensembl:ENSG00000171471 12 12q24.22 microtubule-associated protein 1 light chain 3 beta 2 protein-coding MAP1LC3B2 microtubule-associated protein 1 light chain 3 beta 2 O Microtubule-associated proteins 1A/1B light chain 3B-like protein|microtubule-associated proteins 1A/1B light chain 3 beta 2 20121230 -9606 643253 CCT6P1 - CCT6-5P|CCT6AP1 HGNC:33094 7 7q11.21 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1 pseudo CCT6P1 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1 O - 20121230 -9606 643255 LOC643255 - - - 3 3p12.3 retinoic acid receptor responder (tazarotene induced) 2 pseudogene pseudo - - - - 20121230 -9606 643263 SSU72P6 - - HGNC:43625 11 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 6 pseudo SSU72P6 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 6 O - 20121209 -9606 643264 RPL21P106 - RPL21_48_1266 HGNC:36188 12 12q21.33 ribosomal protein L21 pseudogene 106 pseudo RPL21P106 ribosomal protein L21 pseudogene 106 O - 20121230 -9606 643276 LOC643276 - - - 2 2q21.1 nucleolar complex associated 2 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 643284 RPS29P18 - RPS29_14_993 HGNC:37004 9 9q21.33 ribosomal protein S29 pseudogene 18 pseudo RPS29P18 ribosomal protein S29 pseudogene 18 O - 20121230 -9606 643300 HSPD1P1 - HSPD1-2P HGNC:35133 5 5p14.3 heat shock 60kDa protein 1 (chaperonin) pseudogene 1 pseudo HSPD1P1 heat shock 60kDa protein 1 (chaperonin) pseudogene 1 O - 20121230 -9606 643307 LOC643307 - - - 5 5q12.1 actin, beta pseudogene pseudo - - - - 20121230 -9606 643308 LOC643308 - - - 7 7q35 ribosomal protein L7 pseudogene pseudo - - - - 20121230 -9606 643309 ACTBP1 - - HGNC:134 X Xp11.3 actin, beta pseudogene 1 pseudo ACTBP1 actin, beta pseudogene 1 O - 20121230 -9606 643310 ST13P18 - - HGNC:38861 X Xq21.32 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 18 pseudo ST13P18 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 18 O - 20121230 -9606 643311 CT47B1 - CT47.13|CT47A13 HGNC:33293|MIM:300790|Ensembl:ENSG00000236446|Vega:OTTHUMG00000022308 X Xq24 cancer/testis antigen family 47, member B1 protein-coding CT47B1 cancer/testis antigen family 47, member B1 O cancer/testis CT47 family, member 13|cancer/testis antigen 47.13|cancer/testis antigen 47B|cancer/testis antigen family 147, member B1 20121230 -9606 643314 KIAA0754 - - HGNC:29111|Ensembl:ENSG00000255103|Vega:OTTHUMG00000166964 1 1p34.3 KIAA0754 protein-coding KIAA0754 KIAA0754 O uncharacterized protein KIAA0754 20121230 -9606 643327 LOC643327 - - - 6 6p25.2 uncharacterized LOC643327 unknown - - - - 20120511 -9606 643329 LOC643329 - - - 1 1p13.2 keratin 18 pseudogene pseudo - - - - 20121230 -9606 643332 ECRP - - - 14 14q11.2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) pseudogene pseudo - - - - 20121230 -9606 643336 CDC42P2 - - HGNC:33952 7 7p11.2 cell division cycle 42 pseudogene 2 pseudo CDC42P2 cell division cycle 42 pseudogene 2 O - 20121230 -9606 643338 C15orf62 - - HGNC:34489|Ensembl:ENSG00000188277|Vega:OTTHUMG00000172536 15 15q15.1 chromosome 15 open reading frame 62 protein-coding C15orf62 chromosome 15 open reading frame 62 O uncharacterized protein C15orf62, mitochondrial|uncharacterized protein FLJ75552, mitochondrial 20121230 -9606 643339 LOC643339 - - - 12 12q22 uncharacterized LOC643339 miscRNA - - - - 20121230 -9606 643342 LOC643342 - - - 9 9q22.32 ATM interactor pseudogene pseudo - - - - 20121230 -9606 643343 RPL5P4 - RPL5_1_31 HGNC:36095 1 1p34.3 ribosomal protein L5 pseudogene 4 pseudo RPL5P4 ribosomal protein L5 pseudogene 4 O - 20121230 -9606 643348 LOC643348 - - - 7 7p11.2 ankyrin repeat domain 26 pseudogene pseudo - - - - 20121230 -9606 643353 LOC643353 - - - 7 7q11.21 C9orf140 pseudogene pseudo - - - - 20121230 -9606 643355 LOC643355 - - - 1 1p13.2 uncharacterized LOC643355 protein-coding - - - uncharacterized protein LOC643355 20121230 -9606 643358 RPS27AP16 - RPS27A_8_1488 HGNC:36855 16 16q21 ribosomal protein S27a pseudogene 16 pseudo RPS27AP16 ribosomal protein S27a pseudogene 16 O - 20121230 -9606 643365 LINC00452 - - HGNC:42800 13 13q34 long intergenic non-protein coding RNA 452 miscRNA LINC00452 long intergenic non-protein coding RNA 452 O - 20121230 -9606 643367 LOC643367 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 643371 LOC643371 - - - X Xq21.33 tubulin, beta 2B class IIb pseudogene pseudo - - - - 20121230 -9606 643373 LOC643373 - - - 5 5p13.2 glucuronidase, beta pseudogene pseudo - - - - 20121230 -9606 643376 BTBD18 hCG_1730474 - HGNC:37214|Ensembl:ENSG00000233436|Vega:OTTHUMG00000167203 11 11q12.1 BTB (POZ) domain containing 18 protein-coding BTBD18 BTB (POZ) domain containing 18 O BTB/POZ domain-containing protein 18|hCG1730474 20121230 -9606 643381 LOC643381 - - - 11 11q22.1 zinc finger protein 614 pseudogene pseudo - - - - 20121230 -9606 643382 TMEM253 - C14orf176|C14orf95|NCRNA00220 HGNC:32545|Ensembl:ENSG00000232070|Vega:OTTHUMG00000171361 14 14q11.2 transmembrane protein 253 protein-coding TMEM253 transmembrane protein 253 O transmembrane protein C14orf176 20121230 -9606 643384 UNC93B4 - - HGNC:13484 4 4p16.3 unc-93 homolog B4 pseudogene (C. elegans) pseudo UNC93B4 unc-93 homolog B4 pseudogene (C. elegans) O - 20121230 -9606 643387 LOC643387 - - - 2 2q37.3 TAR DNA binding protein pseudogene pseudo - - - - 20121230 -9606 643394 SPINK9 - LEKTI2 HGNC:32951|MIM:613511|Ensembl:ENSG00000204909|Vega:OTTHUMG00000163431 5 5q32 serine peptidase inhibitor, Kazal type 9 protein-coding SPINK9 serine peptidase inhibitor, Kazal type 9 O lymphoepithelial Kazal-type-related inhibitor 2|serine protease inhibitor Kazal type 9|serine protease inhibitor Kazal-type 9 20121230 -9606 643395 LOC643395 - - - 9 9p11.2 uncharacterized LOC643395 pseudo - - - - 20121209 -9606 643401 LOC643401 - - - 5 5p14.1 uncharacterized LOC643401 miscRNA - - - - 20121230 -9606 643406 LOC643406 - - HPRD:14595 20 20p12.3 uncharacterized LOC643406 miscRNA - - - - 20121230 -9606 643412 BTF3P16 - - HGNC:38568 3 3q12.3 basic transcription factor 3 pseudogene 16 pseudo BTF3P16 basic transcription factor 3 pseudogene 16 O - 20121230 -9606 643414 LIPK RP11-186O14.2 LIPL2|bA186O14.2 HGNC:23444|MIM:613922|Ensembl:ENSG00000204021|Vega:OTTHUMG00000018693 10 10q23.31 lipase, family member K protein-coding LIPK lipase, family member K O lipase K|lipase member K|lipase-like abhydrolase domain-containing protein 2|lipase-like, ab-hydrolase domain containing 2 20121230 -9606 643418 LIPN - LI4|LIPL4|bA186O14.3 HGNC:23452|MIM:613924|Ensembl:ENSG00000204020|Vega:OTTHUMG00000018694 10 10q23.31 lipase, family member N protein-coding LIPN lipase, family member N O lipase member N|lipase-like abhydrolase domain-containing protein 4 20121230 -9606 643421 LOC643421 - - - X Xq25 tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 643427 RBMS2P1 - RBMS2P HGNC:30994 12 12q22 RNA binding motif, single stranded interacting protein 2 pseudogene 1 pseudo RBMS2P1 RNA binding motif, single stranded interacting protein 2 pseudogene 1 O - 20121230 -9606 643432 TSG1 - - - 6 6q16.1 tumor suppressor TSG1 miscRNA - - - - 20121230 -9606 643438 LOC643438 tcag7.1239 - - 7 7q36.1 huntingtin interacting protein K pseudogene pseudo - - - - 20121230 -9606 643441 LOC643441 - - - 1 1p13.2 uncharacterized LOC643441 miscRNA - - - - 20121230 -9606 643445 TRIM43CP - - HGNC:43981 2 2q11.2 tripartite motif containing 43C, pseudogene pseudo TRIM43CP tripartite motif containing 43C, pseudogene O - 20121230 -9606 643446 RNPS1P1 - - HGNC:39525 4 4p15.33 RNA binding protein S1, serine-rich domain pseudogene 1 pseudo RNPS1P1 RNA binding protein S1, serine-rich domain pseudogene 1 O - 20121230 -9606 643447 LOC643447 - - - 11 11p15.4 keratin 8 pseudogene pseudo - - - - 20121230 -9606 643454 LOC643454 - - - 1 1q41 adaptor-related protein complex 3, sigma 1 subunit pseudogene pseudo - - - - 20121230 -9606 643459 DUSP5P2 - - HGNC:44482 3 3p25.3 dual specificity phosphatase 5 pseudogene 2 pseudo DUSP5P2 dual specificity phosphatase 5 pseudogene 2 O - 20121230 -9606 643470 SURF6P1 - - HGNC:37722 Y Yq11.221 surfeit 6 pseudogene 1 pseudo SURF6P1 surfeit 6 pseudogene 1 O - 20121209 -9606 643471 KRT18P12 - - HGNC:33410 1 1q41 keratin 18 pseudogene 12 pseudo KRT18P12 keratin 18 pseudogene 12 O - 20121230 -9606 643479 FAM25E - AC012044.5 HGNC:23587 10 10q11.22 family with sequence similarity 25, member E protein-coding FAM25E family with sequence similarity 25, member E O - 20120511 -9606 643486 LOC643486 hCG_1811337 - - X Xq21.33 bromodomain, testis-specific pseudogene pseudo - - - - 20121230 -9606 643494 LOC643494 - - - 8 8q22.2 RNA binding motif protein 4B pseudogene pseudo - - - - 20121230 -9606 643496 LOC643496 hCG_1660379 - - 2 2q24.3 hCG1660379 unknown - - - - 20120511 -9606 643499 RPL11P5 - RPL11_3_1291 HGNC:36849 12 12q24.31 ribosomal protein L11 pseudogene 5 pseudo RPL11P5 ribosomal protein L11 pseudogene 5 O - 20121230 -9606 643503 TARDBPP1 - TARDBPL|bA318P23.1 HGNC:16536 20 20p12.3 TAR DNA binding protein pseudogene 1 pseudo TARDBPP1 TAR DNA binding protein pseudogene 1 O - 20121230 -9606 643507 RPL7P57 - RPL7_22_1777 HGNC:35901 X Xp11.23 ribosomal protein L7 pseudogene 57 pseudo RPL7P57 ribosomal protein L7 pseudogene 57 O - 20121230 -9606 643513 LOC643513 - - - 4 4q21.21 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) pseudogene pseudo - - - - 20121230 -9606 643520 LOC643520 - - - 9 9q22.32 uncharacterized LOC643520 protein-coding - - - - 20120318 -9606 643529 LOC643529 hCG_2024094 - - 10 10q23.31 hCG2024094 miscRNA - - - - 20121230 -9606 643531 RPL29P26 - RPL29_14_1268 HGNC:35717 12 12q22 ribosomal protein L29 pseudogene 26 pseudo RPL29P26 ribosomal protein L29 pseudogene 26 O - 20121230 -9606 643535 KCTD9P2 RP11-539A6__B.1 KCTD9L HGNC:29274 X Xq22.3 potassium channel tetramerisation domain containing 9 pseudogene 2 pseudo KCTD9P2 potassium channel tetramerisation domain containing 9 pseudogene 2 O - 20121230 -9606 643536 VDAC1P10 - - HGNC:37479 1 1q41 voltage-dependent anion channel 1 pseudogene 10 pseudo VDAC1P10 voltage-dependent anion channel 1 pseudogene 10 O - 20121230 -9606 643542 LOC643542 - - - 18 18q22.1 uncharacterized LOC643542 miscRNA - - - - 20121230 -9606 643549 FLJ40606 - - - 20 20q13.12 uncharacterized LOC643549 unknown - - - - 20120622 -9606 643550 RPL12P33 - RPL12_13_1292 HGNC:35696 12 12q24.31 ribosomal protein L12 pseudogene 33 pseudo RPL12P33 ribosomal protein L12 pseudogene 33 O - 20121230 -9606 643551 LOC643551 - - - 13 13q32.3 uncharacterized LOC643551 unknown - - - - 20120511 -9606 643554 LOC643554 - - - X Xp11.23 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 643562 LOC643562 - - - 6 6q14.1 Rho GTPase activating protein 21 pseudogene pseudo - - - - 20121230 -9606 643563 EEF1A1P15 - EEF1AL13 HGNC:3198 X Xq21.33 eukaryotic translation elongation factor 1 alpha 1 pseudogene 15 pseudo EEF1A1P15 eukaryotic translation elongation factor 1 alpha 1 pseudogene 15 O - 20121230 -9606 643576 LOC643576 hCG_2015269 - - 12 12q23.3 phosphoglycerate mutase 1 (brain) pseudogene pseudo - - - - 20121230 -9606 643579 LOC643579 - - - 4 4p11 uncharacterized LOC643579 pseudo - - - - 20121209 -9606 643582 LOC643582 - - - 18 18q22.1 aldo-keto reductase family 1, member B10 (aldose reductase) pseudogene pseudo - - - - 20121230 -9606 643586 PKMP1 - - HGNC:44243 1 1p13.2 pyruvate kinase, muscle pseudogene 1 pseudo PKMP1 pyruvate kinase, muscle pseudogene 1 O - 20121230 -9606 643587 CTSL1P5 RP11-342C24.5 CTSLL5|bA342C24.4 HGNC:23580 10 10q11.22 cathepsin L1 pseudogene 5 pseudo CTSL1P5 cathepsin L1 pseudogene 5 O - 20121209 -9606 643596 RNF224 - - HGNC:41912|Ensembl:ENSG00000233198 9 9q34.3 ring finger protein 224 protein-coding RNF224 ring finger protein 224 O RING finger protein 224 20121230 -9606 643605 LOC643605 - - - X Xq22.1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 pseudogene pseudo - - - - 20121230 -9606 643609 NR1H5P - Fxrb|NR1H5 HGNC:32673 1 1p13.2 nuclear receptor subfamily 1, group H, member 5, pseudogene pseudo NR1H5P nuclear receptor subfamily 1, group H, member 5, pseudogene O - 20121230 -9606 643615 UBTFL6 - - HGNC:35406 2 2q11.2 upstream binding transcription factor, RNA polymerase I-like 6 (pseudogene) pseudo UBTFL6 upstream binding transcription factor, RNA polymerase I-like 6 (pseudogene) O - 20121230 -9606 643616 MOP-1 - - - 4 4q21.22 MOP-1 unknown - - - - 20120710 -9606 643617 RPSAP8 RP11-402K9.2 LAMR1P8|RPSA_26_1797 HGNC:31462 X Xq22.1 ribosomal protein SA pseudogene 8 pseudo RPSAP8 ribosomal protein SA pseudogene 8 O - 20121230 -9606 643623 LOC643623 - - - 6 6q22.31 uncharacterized LOC643623 miscRNA - - - - 20121230 -9606 643627 RPS18P8 - RPS18_5_650 HGNC:35956 6 6p25.1 ribosomal protein S18 pseudogene 8 pseudo RPS18P8 ribosomal protein S18 pseudogene 8 O - 20121230 -9606 643630 LOC643630 - - - 9 9p11.2 ribosomal protein L7a pseudogene pseudo - - - - 20121230 -9606 643634 LOC643634 - - - 3 3p24.1 tropomyosin 1 (alpha) pseudogene pseudo - - - - 20121230 -9606 643637 GLYATL1P4 - - HGNC:37864 11 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 4 pseudo GLYATL1P4 glycine-N-acyltransferase-like 1 pseudogene 4 O - 20121230 -9606 643641 ZNF862 - - HGNC:34519|Ensembl:ENSG00000106479|Vega:OTTHUMG00000158093 7 7q36.1 zinc finger protein 862 protein-coding ZNF862 zinc finger protein 862 O - 20121230 -9606 643646 HSD17B1P1 - EDH17B1|EDHB17|HSD17|HSD17BP1|SDR28C1P1 HGNC:5216 17 17q21.2 hydroxysteroid (17-beta) dehydrogenase 1 pseudogene 1 pseudo HSD17B1P1 hydroxysteroid (17-beta) dehydrogenase 1 pseudogene 1 O - 20121230 -9606 643648 LOC643648 - - - 9 9p11.2 uncharacterized LOC643648 miscRNA - - - - 20121230 -9606 643650 LOC643650 - - - 10 10q11.22 uncharacterized LOC643650 miscRNA - - - - 20121230 -9606 643653 RPL35P8 - RPL35_6_1759 HGNC:36158 22 22q13.33 ribosomal protein L35 pseudogene 8 pseudo RPL35P8 ribosomal protein L35 pseudogene 8 O - 20121230 -9606 643659 LOC643659 hCG_2019139 - - 20 20p11.23 hCG2019139 unknown - - - - 20120511 -9606 643664 SLC35G6 - AMAC1L3|TMEM21B HGNC:31351|Ensembl:ENSG00000259224 17 17p13.1 solute carrier family 35, member G6 protein-coding SLC35G6 solute carrier family 35, member G6 O acyl-malonyl condensing enzyme 1-like 3|acyl-malonyl-condensing enzyme 1-like protein 3|protein AMAC1L3|solute carrier family 35 member G6|transmembrane protein 21B 20121230 -9606 643668 PSMC1P9 - - HGNC:39784 12 12p12.3 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 9 pseudo PSMC1P9 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 9 O - 20121230 -9606 643669 LOC643669 - - Ensembl:ENSG00000262484|Vega:OTTHUMG00000177374 19 19q13.2 uncharacterized LOC643669 protein-coding - - - uncharacterized protein LOC643669 20121230 -9606 643675 LOC643675 hCG_2045751 - - 4 4q24 hCG2045751 unknown - - - - 20120511 -9606 643677 CCDC168 hCG_2011852 C13orf40 HGNC:26851 13 13q33.1 coiled-coil domain containing 168 protein-coding CCDC168 coiled-coil domain containing 168 O coiled-coil domain-containing protein 168 20121230 -9606 643680 MS4A4E - - HGNC:14284|MIM:608401|Ensembl:ENSG00000214787|Vega:OTTHUMG00000167354 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 4E protein-coding MS4A4E membrane-spanning 4-domains, subfamily A, member 4E O - 20121230 -9606 643689 HNRNPA3P3 - - HGNC:39772 X Xq27.1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 3 pseudo HNRNPA3P3 heterogeneous nuclear ribonucleoprotein A3 pseudogene 3 O - 20121230 -9606 643696 LOC643696 - - - 15 15q25.2 uncharacterized LOC643696 unknown - - - - 20121209 -9606 643699 GOLGA8R - - HGNC:44407|Ensembl:ENSG00000232653|Vega:OTTHUMG00000175401 15 15q13.2 golgin A8 family, member R protein-coding GOLGA8R golgin A8 family, member R O - 20121230 -9606 643707 GOLGA6L4 - - Ensembl:ENSG00000184206|Vega:OTTHUMG00000163050 15 15q25.2 golgin A6 family-like 4 protein-coding - - - golgi autoantigen, golgin subfamily a, 6-like 4|putative golgin subfamily A member 6-like protein 4 20121230 -9606 643709 LOC643709 - - - 11 11q12.1 macrophage expressed 1 pseudogene pseudo - - - - 20121230 -9606 643711 LOC643711 - - - 12 12q23.1 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) pseudogene pseudo - - - - 20121230 -9606 643714 LOC643714 - - - 16 16q12.1 uncharacterized LOC643714 miscRNA - - - - 20121230 -9606 643719 SCGB1B2P - SCGB4A1P HGNC:20741 19 19q13.11 secretoglobin, family 1B, member 2, pseudogene pseudo SCGB1B2P secretoglobin, family 1B, member 2, pseudogene O - 20121230 -9606 643721 FLJ45508 - - - 12 12q23.3 uncharacterized LOC643721 unknown - - - - 20121221 -9606 643723 LOC643723 - - - 1 1q41 uncharacterized LOC643723 miscRNA - - - - 20121230 -9606 643733 LOC643733 - - - 11 11q22.3 caspase 4, apoptosis-related cysteine peptidase pseudogene pseudo - - - - 20121230 -9606 643736 LCA10 - LCAP - X Xq28 lung carcinoma-associated protein 10 protein-coding - - - putative lung carcinoma-associated protein 10 20120815 -9606 643739 GAPDHP31 - - HGNC:37783 12 12p13.31 glyceraldehyde 3 phosphate dehydrogenase pseudogene 31 pseudo GAPDHP31 glyceraldehyde 3 phosphate dehydrogenase pseudogene 31 O - 20121230 -9606 643744 HMGN2P4 - HMGN2L4 HGNC:33567 5 5q13.3 high mobility group nucleosomal binding domain 2 pseudogene 4 pseudo HMGN2P4 high mobility group nucleosomal binding domain 2 pseudogene 4 O - 20121230 -9606 643749 TRAF3IP2-AS1 - C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 HGNC:40005 6 6q21 TRAF3IP2 antisense RNA 1 miscRNA TRAF3IP2-AS1 TRAF3IP2 antisense RNA 1 O - 20121230 -9606 643751 CDC42P6 - - HGNC:44430 4 4p15.2 CDC42P6 pseudo CDC42P6 CDC42P6 O - 20121230 -9606 643752 RAP1BL hCG_1757335 - - 5 5q13.3 RAP1B, member of RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 643763 UG0898H09 - - - 8 8q12.3 uncharacterized LOC643763 miscRNA - - - - 20121230 -9606 643766 PSMC1P6 - - HGNC:39781 3 3p11.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 6 pseudo PSMC1P6 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 6 O - 20121230 -9606 643770 LOC643770 - - - 12 12q23.1 uncharacterized LOC643770 miscRNA - - - - 20121230 -9606 643773 PNPLA10P - - HGNC:32928 X Xq25 patatin-like phospholipase domain containing 10 pseudogene pseudo PNPLA10P patatin-like phospholipase domain containing 10 pseudogene O - 20121230 -9606 643779 RPLP0P5 - RPLP0_1_167 HGNC:35620 1 1q41 ribosomal protein, large, P0 pseudogene 5 pseudo RPLP0P5 ribosomal protein, large, P0 pseudogene 5 O - 20121230 -9606 643783 USP46-AS1 - - HGNC:43991 4 4q12 USP46 antisense RNA 1 miscRNA USP46-AS1 USP46 antisense RNA 1 O - 20121230 -9606 643784 LOC643784 - - - 5 5q13.2 NLR family, apoptosis inhibitory protein pseudogene pseudo - - - - 20121209 -9606 643790 HMGN1P38 - - HGNC:39422 15 15q26.1 high mobility group nucleosome binding domain 1 pseudogene 38 pseudo HMGN1P38 high mobility group nucleosome binding domain 1 pseudogene 38 O - 20121230 -9606 643792 LOC643792 AL953854.2 - - 9 9p11.2-p11.1 contactin associated protein-like 3 pseudogene pseudo - - - - 20121216 -9606 643797 LOC643797 UNQ6190 - - 15 15q26.1 AGVR6190 unknown - - - - 20121230 -9606 643802 LOC643802 - - - 16 16q12.2 u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding - - - uncharacterized protein LOC643802 20121230 -9606 643803 KRTAP24-1 - KAP24.1 HGNC:33902|Ensembl:ENSG00000188694|Vega:OTTHUMG00000125483 21 21q22.11 keratin associated protein 24-1 protein-coding KRTAP24-1 keratin associated protein 24-1 O keratin-associated protein 24-1 20121230 -9606 643812 KRTAP27-1 - - HGNC:33864|Ensembl:ENSG00000206107|Vega:OTTHUMG00000059577 21 21q22.11 keratin associated protein 27-1 protein-coding KRTAP27-1 keratin associated protein 27-1 O keratin-associated protein 27-1 20121230 -9606 643827 LOC643827 - - - 9 9q12 contactin associated protein-like 3 pseudogene pseudo - - - - 20121209 -9606 643831 PDCL3P2 - - HGNC:31705 8 8q22.3 phosducin-like 3 pseudogene 2 pseudo PDCL3P2 phosducin-like 3 pseudogene 2 O - 20121230 -9606 643832 GAGE10 - - HGNC:30968|MIM:300737|Ensembl:ENSG00000215274|Vega:OTTHUMG00000024136 X Xp11.23 G antigen 10 protein-coding GAGE10 G antigen 10 O GAGE-10 20121230 -9606 643834 PGA3 - PGA4|PGA5 HGNC:8885|MIM:169710|Ensembl:ENSG00000229859|Vega:OTTHUMG00000168071 11 11q12.2 pepsinogen 3, group I (pepsinogen A) protein-coding PGA3 pepsinogen 3, group I (pepsinogen A) O pepsin A|pepsinogen A3 20121230 -9606 643836 ZFP62 - ZET|ZNF755 HGNC:23241|MIM:610281|Ensembl:ENSG00000196670|Vega:OTTHUMG00000162273 5 5q35.3 ZFP62 zinc finger protein protein-coding ZFP62 ZFP62 zinc finger protein O zfp-62|zinc finger protein 62 homolog 20121230 -9606 643837 LOC643837 - - - 1 1p36.33 uncharacterized LOC643837 miscRNA - - - - 20121230 -9606 643845 LOC643845 - - - 9 - suppressor of hairless protein homolog pseudo - - - - 20121209 -9606 643847 PGA4 - PGA3|PGA5 HGNC:8886|MIM:169720|Ensembl:ENSG00000229183|Vega:OTTHUMG00000168073 11 11q12.2 pepsinogen 4, group I (pepsinogen A) protein-coding PGA4 pepsinogen 4, group I (pepsinogen A) O pepsin A|pepsinogen A4|pepsinogen-3|pepsinogen-4 20121209 -9606 643851 RPL31P32 - RPL31_14_719 HGNC:35719 6 6q14.3 ribosomal protein L31 pseudogene 32 pseudo RPL31P32 ribosomal protein L31 pseudogene 32 O - 20121230 -9606 643853 TMPPE - - HGNC:33865|Ensembl:ENSG00000188167|Vega:OTTHUMG00000155779 3 3p22.3 transmembrane protein with metallophosphoesterase domain protein-coding TMPPE transmembrane protein with metallophosphoesterase domain O - 20121230 -9606 643854 CTAGE9 hCG_2030429 - HGNC:37275|Ensembl:ENSG00000236761|Vega:OTTHUMG00000047966 6 6q23.2 CTAGE family, member 9 protein-coding CTAGE9 CTAGE family, member 9 O cutaneous T-cell lymphoma-associated antigen 9|protein cTAGE-9 20121230 -9606 643855 LOC643855 - - - 11 11q22.3 G1 to S phase transition pseudogene pseudo - - - - 20121230 -9606 643858 KRT18P30 - - HGNC:33399 6 6q14.3 keratin 18 pseudogene 30 pseudo KRT18P30 keratin 18 pseudogene 30 O - 20121230 -9606 643859 FEM1AP3 - - HGNC:39831 6 6q21 fem-1 homolog a (C. elegans) pseudogene 3 pseudo FEM1AP3 fem-1 homolog a (C. elegans) pseudogene 3 O - 20121230 -9606 643860 ATP5A1P6 - - HGNC:37664 9 9p11.2 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 6 pseudo ATP5A1P6 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 6 O - 20121209 -9606 643862 LOC643862 - - - 7 7q11.23 Williams Beuren syndrome chromosome region 19 pseudogene pseudo - - - - 20121230 -9606 643863 RPL17P34 - RPL17_10_1081 HGNC:36756 10 10q23.33 ribosomal protein L17 pseudogene 34 pseudo RPL17P34 ribosomal protein L17 pseudogene 34 O - 20121230 -9606 643865 KRT126P - KRT HGNC:32970 12 12q13.13 keratin 126 pseudogene pseudo KRT126P keratin 126 pseudogene O - 20121230 -9606 643866 CBLN3 UNQ755 PRO1486 HGNC:20146|MIM:612978|Ensembl:ENSG00000139899|Vega:OTTHUMG00000171315 14 14q12 cerebellin 3 precursor protein-coding CBLN3 cerebellin 3 precursor O cerebellin-3 20121230 -9606 643870 LOC643870 - - - 6 6q14.3 tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 643872 HMGN2P6 - HMGN2L6 HGNC:33574 14 14q12 high mobility group nucleosomal binding domain 2 pseudogene 6 pseudo HMGN2P6 high mobility group nucleosomal binding domain 2 pseudogene 6 O - 20121230 -9606 643873 EIF4BP7 - - HGNC:37940 X Xq23 eukaryotic translation initiation factor 4B pseudogene 7 pseudo EIF4BP7 eukaryotic translation initiation factor 4B pseudogene 7 O - 20121230 -9606 643875 CNN3P1 - - HGNC:38666 6 6p25.1 calponin 3, acidic pseudogene 1 pseudo CNN3P1 calponin 3, acidic pseudogene 1 O - 20121230 -9606 643880 LOC643880 - - - 9 9q13 FK506 binding protein 4, 59kDa pseudogene pseudo - - - - 20121209 -9606 643884 SOCS5P5 - - HGNC:44601 6 6q21 suppressor of cytokine signaling 5 pseudogene 5 pseudo SOCS5P5 suppressor of cytokine signaling 5 pseudogene 5 O - 20121230 -9606 643888 LOC643888 - - - X Xq23 coiled-coil domain containing 121 pseudogene pseudo - - - - 20121230 -9606 643896 LOC643896 hCG_1790474 - - 2 2q11.2 cAMP-regulated phosphoprotein, 19kDa pseudogene pseudo - - - - 20121230 -9606 643898 ARL2BPP2 - ARL2BPL|bcm1040 HGNC:31036 12 12q13.13 ADP-ribosylation factor-like 2 binding protein pseudogene 2 pseudo ARL2BPP2 ADP-ribosylation factor-like 2 binding protein pseudogene 2 O - 20121230 -9606 643904 RNF222 - - HGNC:34517|Ensembl:ENSG00000189051|Vega:OTTHUMG00000132049 17 17p13.1 ring finger protein 222 protein-coding RNF222 ring finger protein 222 O RING finger protein 222|RING finger protein LOC643904 20121230 -9606 643905 PRR21 - - HGNC:33866|Ensembl:ENSG00000221961|Vega:OTTHUMG00000159174 2 2q37.3 proline rich 21 protein-coding PRR21 proline rich 21 O putative proline-rich protein 21 20121230 -9606 643906 RPL7P27 - RPL7_11_720 HGNC:36649 6 6q14.3 ribosomal protein L7 pseudogene 27 pseudo RPL7P27 ribosomal protein L7 pseudogene 27 O - 20121230 -9606 643909 LOC643909 - - - 7 7q11.23 Williams Beuren syndrome chromosome region 19 pseudogene pseudo - - - - 20121230 -9606 643911 CRNDE hCG_1815491 LINC00180|NCRNA00180 HGNC:37078 16 16q12.2 colorectal neoplasia differentially expressed (non-protein coding) miscRNA CRNDE colorectal neoplasia differentially expressed (non-protein coding) O - 20121230 -9606 643915 MORF4L2P1 - MORF4LP4|MRG4 HGNC:20403 4 4q12 mortality factor 4 like 2 pseudogene 1 pseudo MORF4L2P1 mortality factor 4 like 2 pseudogene 1 O - 20121230 -9606 643916 LOC643916 - - - 6 6q14.3 RAB1A, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 643923 LOC643923 - - - 11 11q22.3 uncharacterized LOC643923 miscRNA - - - - 20121230 -9606 643932 RPS3AP20 - RPS3A_6_581 HGNC:36141 5 5q14.1 ribosomal protein S3a pseudogene 20 pseudo RPS3AP20 ribosomal protein S3a pseudogene 20 O - 20121230 -9606 643936 LOC643936 - - - 6 6p24.3 uncharacterized LOC643936 protein-coding - - - - 20120318 -9606 643941 PHKG1P1 - - HGNC:33916 7 7q11.21 phosphorylase kinase, gamma 1 pseudogene 1 pseudo PHKG1P1 phosphorylase kinase, gamma 1 pseudogene 1 O - 20121230 -9606 643949 RPLP2P3 - RPLP2_2_1170 HGNC:36494 11 11q22.3 ribosomal protein, large, P2 pseudogene 3 pseudo RPLP2P3 ribosomal protein, large, P2 pseudogene 3 O - 20121230 -9606 643954 RPSAP43 - RPSA_12_742 HGNC:35501 6 6q21 ribosomal protein SA pseudogene 43 pseudo RPSAP43 ribosomal protein SA pseudogene 43 O - 20121230 -9606 643955 ZNF733P - ZNF733 HGNC:32473 7 7q11.21 zinc finger protein 733, pseudogene pseudo ZNF733P zinc finger protein 733, pseudogene O - 20121230 -9606 643960 RPS2P18 - RPS2_7_293 HGNC:36449 2 2q31.1 ribosomal protein S2 pseudogene 18 pseudo RPS2P18 ribosomal protein S2 pseudogene 18 O - 20121230 -9606 643962 LOC643962 - - - 6 6q15 uncharacterized LOC643962 unknown - - - - 20121017 -9606 643965 TMEM88B - - HGNC:37099|Ensembl:ENSG00000205116|Vega:OTTHUMG00000153395 1 1p36.33 transmembrane protein 88B protein-coding TMEM88B transmembrane protein 88B O - 20121230 -9606 643971 RPL7P29 - RPL7_13_721 HGNC:35700 6 6q14.3 ribosomal protein L7 pseudogene 29 pseudo RPL7P29 ribosomal protein L7 pseudogene 29 O - 20121230 -9606 643974 RPL6P13 - RPL6_10_498 HGNC:36399 4 4q21.3 ribosomal protein L6 pseudogene 13 pseudo RPL6P13 ribosomal protein L6 pseudogene 13 O - 20121230 -9606 643976 FOXN3P1 - - HGNC:43882 X Xq22.1 forkhead box N3 pseudogene 1 pseudo FOXN3P1 forkhead box N3 pseudogene 1 O - 20121230 -9606 643977 FLJ32255 - - - 5 5p12 uncharacterized LOC643977 unknown - - - - 20121230 -9606 643981 RPS3AP36 - RPS3A_16_1083 HGNC:35596 10 10q24.1 ribosomal protein S3a pseudogene 36 pseudo RPS3AP36 ribosomal protein S3a pseudogene 36 O - 20121230 -9606 643987 HSFY4P - - HGNC:37721 Y Yq11.223 heat shock transcription factor, Y-linked 4, pseudogene pseudo HSFY4P heat shock transcription factor, Y-linked 4, pseudogene O - 20121230 -9606 643988 C1orf233 - - HGNC:42951|Ensembl:ENSG00000228594|Vega:OTTHUMG00000154864 1 1p36.33 chromosome 1 open reading frame 233 protein-coding C1orf233 chromosome 1 open reading frame 233 O fibronectin type-III domain-containing transmembrane protein C1orf233 20121230 -9606 643992 RPS2P26 - RPS2_8_601 HGNC:36157 5 5q22.3 ribosomal protein S2 pseudogene 26 pseudo RPS2P26 ribosomal protein S2 pseudogene 26 O - 20121230 -9606 643996 VDAC2P2 - - HGNC:32693 12 12p13.31 voltage-dependent anion channel 2 pseudogene 2 pseudo VDAC2P2 voltage-dependent anion channel 2 pseudogene 2 O - 20121230 -9606 643997 LOC643997 - - - 2 2q31.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 644000 ARAF2P - ARAF2|ARAFPS|PKS1 HGNC:647 7 7q11.21 v-raf murine sarcoma 3611 viral oncogene homolog 2, pseudogene pseudo ARAF2P v-raf murine sarcoma 3611 viral oncogene homolog 2, pseudogene O - 20121230 -9606 644006 LOC644006 - - - 1 1q42.2 ring finger protein 4 pseudogene pseudo - - - - 20121230 -9606 644013 RPS6P3 - RPS6_1_251 HGNC:36943 2 2q11.2 ribosomal protein S6 pseudogene 3 pseudo RPS6P3 ribosomal protein S6 pseudogene 3 O - 20121230 -9606 644016 HSPD1P10 - HSPD1-4P HGNC:35131 6 6q15 heat shock 60kDa protein 1 (chaperonin) pseudogene 10 pseudo HSPD1P10 heat shock 60kDa protein 1 (chaperonin) pseudogene 10 O - 20121230 -9606 644017 ZNF734P - ZNF734 HGNC:32465 7 7q11.21 zinc finger protein 734, pseudogene pseudo ZNF734P zinc finger protein 734, pseudogene O - 20121230 -9606 644019 CBWD6 BX255923.2 - HGNC:31978|Ensembl:ENSG00000204790|Vega:OTTHUMG00000066820 9 9q21.11 COBW domain containing 6 protein-coding CBWD6 COBW domain containing 6 O COBW domain-containing protein 6|cobalamin synthase W domain-containing protein 6|cobalamin synthetase W domain-containing protein 6 20121230 -9606 644020 RPL32P23 - RPL32_6_1020 HGNC:36007 10 10p15.1 ribosomal protein L32 pseudogene 23 pseudo RPL32P23 ribosomal protein L32 pseudogene 23 O - 20121230 -9606 644021 CTSL1P3 - CTSLL3 HGNC:2541 10 10q11.22 cathepsin L1 pseudogene 3 pseudo CTSL1P3 cathepsin L1 pseudogene 3 O - 20121230 -9606 644022 RPL22P19 - RPL22_8_1294 HGNC:36567 12 12q24.31 ribosomal protein L22 pseudogene 19 pseudo RPL22P19 ribosomal protein L22 pseudogene 19 O - 20121230 -9606 644029 RPL7AP62 - RPL7A_28_1429 HGNC:36890 15 15q21.1 ribosomal protein L7a pseudogene 62 pseudo RPL7AP62 ribosomal protein L7a pseudogene 62 O - 20121230 -9606 644030 LOC644030 - - - 11 11p15.4 keratin, type I cytoskeletal 18-like pseudo - - - - 20121230 -9606 644032 PHKG1P2 - - HGNC:33917 7 7q11.21 phosphorylase kinase, gamma 1 pseudogene 2 pseudo PHKG1P2 phosphorylase kinase, gamma 1 pseudogene 2 O - 20121230 -9606 644035 NONOP1 - - HGNC:42031 16 16q22.1 non-POU domain containing, octamer-binding pseudogene 1 pseudo NONOP1 non-POU domain containing, octamer-binding pseudogene 1 O - 20121230 -9606 644037 HNRNPA1P12 - - HGNC:39130 5 5q14.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 12 pseudo HNRNPA1P12 heterogeneous nuclear ribonucleoprotein A1 pseudogene 12 O - 20121230 -9606 644041 C18orf63 - DKFZP781G0119 HGNC:40037|Ensembl:ENSG00000206043|Vega:OTTHUMG00000178987 18 18q22.3 chromosome 18 open reading frame 63 protein-coding C18orf63 chromosome 18 open reading frame 63 O uncharacterized protein C18orf63 20121230 -9606 644042 SLC25A5P6 - ANTP6 HGNC:512 4 4q35.2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 6 pseudo SLC25A5P6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 6 O - 20121230 -9606 644050 LOC644050 - - - 19 19q13.12 uncharacterized LOC644050 miscRNA - - - - 20120622 -9606 644051 LOC644051 - - - 6 6p24.3 isocitrate dehydrogenase pseudogene pseudo - - - - 20121230 -9606 644054 FAM25C RP11-164N7.2 FAM25A|FAM25B|FAM25G|bA164N7.4 HGNC:23586|Ensembl:ENSG00000188279|Vega:OTTHUMG00000018165 10 10q11.22 family with sequence similarity 25, member C protein-coding FAM25C family with sequence similarity 25, member C O protein FAM25|protein FAM25C 20121230 -9606 644058 LOC644058 hCG_2045048 - - 6 6p24.3 hCG2045048 protein-coding - - - - 20120720 -9606 644059 PYY3 RP13-377G1__A.2 - HGNC:31855|Vega:OTTHUMG00000021515 X Xp11.22 peptide YY, 3 (pseudogene) pseudo PYY3 peptide YY, 3 (pseudogene) O - 20121230 -9606 644060 LOC644060 - - - 1 1q21.1 IGF-II mRNA-binding protein 2-like pseudo - - - - 20121230 -9606 644063 HNRNPKP4 - - HGNC:42377 3 3q11.2 heterogeneous nuclear ribonucleoprotein K pseudogene 4 pseudo HNRNPKP4 heterogeneous nuclear ribonucleoprotein K pseudogene 4 O - 20121230 -9606 644068 RPS14P3 - RPS14_1_16 HGNC:35797 1 1p36.13 ribosomal protein S14 pseudogene 3 pseudo RPS14P3 ribosomal protein S14 pseudogene 3 O - 20121230 -9606 644070 LOC644070 - - - 17 17p13.1 germ cell-specific gene 1-like protein 2-like protein-coding - - - GSG1-like protein 2|Putative germ cell-specific gene 1-like protein 2 20121104 -9606 644076 GLYCAM1 - - HGNC:18023 12 12q13.2 glycosylation dependent cell adhesion molecule 1 (pseudogene) pseudo GLYCAM1 glycosylation dependent cell adhesion molecule 1 (pseudogene) O - 20121230 -9606 644079 BCRP1 - BCR-1 HGNC:39073 22 22q11.23 breakpoint cluster region pseudogene 1 pseudo BCRP1 breakpoint cluster region pseudogene 1 O - 20121230 -9606 644082 RPL18AP8 - RPL18A_3_387 HGNC:36984 3 3q11.2 ribosomal protein L18a pseudogene 8 pseudo RPL18AP8 ribosomal protein L18a pseudogene 8 O - 20121230 -9606 644083 LOC644083 - - - 1 1p36.13 uncharacterized LOC644083 unknown - - - - 20121230 -9606 644086 LOC644086 - - - 7 7p15.1 uncharacterized LOC644086 unknown - - - - 20121230 -9606 644090 LOC644090 - - - 7 7q36.1 uncharacterized LOC644090 unknown - - - - 20121230 -9606 644093 LOC644093 hCG_2040054 - - 2 2p16.3 hCG2040054 miscRNA - - - - 20121230 -9606 644094 PSMC1P12 - - HGNC:39787 1 1p12 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 12 pseudo PSMC1P12 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 12 O - 20121230 -9606 644096 SDHAF1 - LYRM8 HGNC:33867|MIM:612848|Ensembl:ENSG00000205138|Vega:OTTHUMG00000181745 19 19q13.12 succinate dehydrogenase complex assembly factor 1 protein-coding SDHAF1 succinate dehydrogenase complex assembly factor 1 O LYR motif containing 8|LYR motif-containing protein 8|SDH assembly factor 1|succinate dehydrogenase assembly factor 1, mitochondrial 20121230 -9606 644100 ARL14EPL - - HGNC:44201 5 5q23.1 ADP-ribosylation factor-like 14 effector protein-like protein-coding ARL14EPL ADP-ribosylation factor-like 14 effector protein-like O ARL14 effector protein-like 20121230 -9606 644101 CBX3P9 - - HGNC:42881 6 6q22.1 chromobox homolog 3 pseudogene 9 pseudo CBX3P9 chromobox homolog 3 pseudogene 9 O - 20121230 -9606 644103 RPL29P18 - RPL29_8_938 HGNC:36327 8 8q22.3 ribosomal protein L29 pseudogene 18 pseudo RPL29P18 ribosomal protein L29 pseudogene 18 O - 20121230 -9606 644109 RPSAP50 - RPSA_24_1172 HGNC:35896 11 11q22.3 ribosomal protein SA pseudogene 50 pseudo RPSAP50 ribosomal protein SA pseudogene 50 O - 20121230 -9606 644110 LOC644110 - - - 15 15q13.3 hyperpolarization activated cyclic nucleotide-gated potassium channel pseudogene pseudo - - - - 20121230 -9606 644119 RPS14P9 - RPS14_6_722 HGNC:36286 6 6q15 ribosomal protein S14 pseudogene 9 pseudo RPS14P9 ribosomal protein S14 pseudogene 9 O - 20121230 -9606 644128 RPL23AP53 - RPL23A_20_869 HGNC:35921 8 8p23.3 ribosomal protein L23a pseudogene 53 pseudo RPL23AP53 ribosomal protein L23a pseudogene 53 O - 20121230 -9606 644129 HMGB1P15 - - HGNC:39097 X Xp11.22 high mobility group box 1 pseudogene 15 pseudo HMGB1P15 high mobility group box 1 pseudogene 15 O - 20121230 -9606 644131 CCT8P1 - CCT8-1P HGNC:35144 1 1q21.1 chaperonin containing TCP1, subunit 8 (theta) pseudogene 1 pseudo CCT8P1 chaperonin containing TCP1, subunit 8 (theta) pseudogene 1 O - 20121230 -9606 644135 LOC644135 - - - 6 6q23.3 uncharacterized LOC644135 unknown - - - - 20121230 -9606 644138 GOT2P3 - GOT2L3|GOT2L3P HGNC:4436 12 12p13.31 glutamic-oxaloacetic transaminase 2 pseudogene 3 pseudo GOT2P3 glutamic-oxaloacetic transaminase 2 pseudogene 3 O - 20121230 -9606 644139 PIRT hCG_1776018 - HGNC:37239|MIM:612068|Ensembl:ENSG00000233670|Vega:OTTHUMG00000178234 17 17p12 phosphoinositide-interacting regulator of transient receptor potential channels protein-coding PIRT phosphoinositide-interacting regulator of transient receptor potential channels O phosphoinositide-interacting protein|phosphoinositide-interacting regulator of TRPV1 20121230 -9606 644145 LOC644145 hCG_2040572 - - 4 4q12 exocyst complex component 1 pseudogene pseudo - - - - 20121230 -9606 644146 RPS14P8 - RPS14_5_603 HGNC:37027 5 5q23.1 ribosomal protein S14 pseudogene 8 pseudo RPS14P8 ribosomal protein S14 pseudogene 8 O - 20121230 -9606 644150 WIPF3 - CR16 HGNC:22004|MIM:612432|Ensembl:ENSG00000122574|Vega:OTTHUMG00000152761 7 7p14.3 WAS/WASL interacting protein family, member 3 protein-coding WIPF3 WAS/WASL interacting protein family, member 3 O WAS/WASL-interacting protein family member 3|corticosteroids and regional expression protein 16 homolog 20121230 -9606 644153 DNM1P31 - DNM1DN4-2|DNM1DN4.2|DNM1DN4@ HGNC:35178 15 15q13.3 DNM1 pseudogene 31 pseudo DNM1P31 DNM1 pseudogene 31 O - 20121209 -9606 644154 RPL10AP8 - RPL10A_3_573 HGNC:36709 5 5q13.2 ribosomal protein L10a pseudogene 8 pseudo RPL10AP8 ribosomal protein L10a pseudogene 8 O - 20121230 -9606 644157 DND1P1 - - HGNC:31444 17 17q21.31 dead end homolog 1 pseudogene 1 pseudo DND1P1 dead end homolog 1 pseudogene 1 O - 20121230 -9606 644158 LOC644158 - - - 2 2q31.1 leucine rich repeat containing 2 pseudogene pseudo - - - - 20121230 -9606 644159 SLC25A1P3 - - HGNC:43846 7 7q11.21 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 3 pseudo SLC25A1P3 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 3 O - 20121230 -9606 644160 LOC644160 - - - 9 9q31.1 actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 644165 BCRP3 - BCR3|BCRL3|BCRL6 HGNC:1016|MIM:113640 22 22q11.23 breakpoint cluster region pseudogene 3 pseudo BCRP3 breakpoint cluster region pseudogene 3 O - 20121230 -9606 644166 RPS26P20 - RPS26_7_290 HGNC:36485 2 2q31.1 ribosomal protein S26 pseudogene 20 pseudo RPS26P20 ribosomal protein S26 pseudogene 20 O - 20121230 -9606 644168 DRGX - DRG11|PRRXL1 HGNC:21536|MIM:606701|Ensembl:ENSG00000165606|Vega:OTTHUMG00000018192 10 10q11.23 dorsal root ganglia homeobox protein-coding DRGX dorsal root ganglia homeobox O dorsal root ganglia homeobox protein|paired related homeobox-like 1|paired-like homeodomain trancription factor DRG11|paired-related homeobox protein-like 1 20121230 -9606 644169 LOC644169 - - - 11 11p15.4 voltage-dependent anion channel 1 pseudogene pseudo - - - - 20121230 -9606 644172 LOC644172 - - - 17 17q21.31 mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 644173 LOC644173 - - - 4 4q12 uncharacterized LOC644173 unknown - - - - 20121017 -9606 644186 SYCE3 - C22orf41|THEG2 HGNC:35245|Ensembl:ENSG00000217442|Vega:OTTHUMG00000150273 22 22q13.33 synaptonemal complex central element protein 3 protein-coding SYCE3 synaptonemal complex central element protein 3 O testis highly expressed gene 2 protein|testis highly expressed protein 2 20121230 -9606 644189 LOC644189 - - - 19 19q13.12 acyl-CoA thioesterase 4 pseudogene pseudo - - - - 20121230 -9606 644191 RPS26P8 - RPS26_20_1551 HGNC:31329 17 17q21.31 ribosomal protein S26 pseudogene 8 pseudo RPS26P8 ribosomal protein S26 pseudogene 8 O - 20121230 -9606 644192 NR2F2-AS1 - - HGNC:44222 15 15q26.2 NR2F2 antisense RNA 1 miscRNA NR2F2-AS1 NR2F2 antisense RNA 1 O - 20121230 -9606 644198 RPLP2P2 - RPLP2_1_633 HGNC:36590 5 5q33.3 ribosomal protein, large, P2 pseudogene 2 pseudo RPLP2P2 ribosomal protein, large, P2 pseudogene 2 O - 20121230 -9606 644202 RPL12P27 - RPL12_9_1087 HGNC:36916 10 10q24.1 ribosomal protein L12 pseudogene 27 pseudo RPL12P27 ribosomal protein L12 pseudogene 27 O - 20121230 -9606 644203 LOC644203 - - - 12 12q23.3 glutaryl-CoA dehydrogenase, mitochondrial-like pseudo - - - - 20121230 -9606 644213 GAPDHP32 - - HGNC:37784 1 1p12 glyceraldehyde 3 phosphate dehydrogenase pseudogene 32 pseudo GAPDHP32 glyceraldehyde 3 phosphate dehydrogenase pseudogene 32 O - 20121230 -9606 644214 PHBP11 - - HGNC:39290 1 1q41 prohibitin pseudogene 11 pseudo PHBP11 prohibitin pseudogene 11 O - 20121230 -9606 644215 LOC644215 - - - 10 10q24.1 uncharacterized LOC644215 protein-coding - - - - 20120710 -9606 644218 TRPC6P - TRPC6L HGNC:23270 X|Y Xq28;Yq12 transient receptor potential cation channel, subfamily C, member 6 pseudogene pseudo TRPC6P transient receptor potential cation channel, subfamily C, member 6 pseudogene O - 20121230 -9606 644220 ACTBP11 - - HGNC:33971 1 1q41 actin, beta pseudogene 11 pseudo ACTBP11 actin, beta pseudogene 11 O - 20121230 -9606 644223 RPL9P4 - RPL9_9_1348 HGNC:23556 14 14q12 ribosomal protein L9 pseudogene 4 pseudo RPL9P4 ribosomal protein L9 pseudogene 4 O - 20121230 -9606 644233 AURKBPS1 - AurBps1 HGNC:18613 8 8q23.1 aurora kinase B pseudogene 1 pseudo AURKBPS1 aurora kinase B pseudogene 1 O - 20121230 -9606 644236 RPL7AP43 - RPL7A_17_815 HGNC:35775 7 7q11.23 ribosomal protein L7a pseudogene 43 pseudo RPL7AP43 ribosomal protein L7a pseudogene 43 O - 20121230 -9606 644237 GAPDHP33 - - HGNC:37785 1 1p12 glyceraldehyde 3 phosphate dehydrogenase pseudogene 33 pseudo GAPDHP33 glyceraldehyde 3 phosphate dehydrogenase pseudogene 33 O - 20121230 -9606 644242 LINC00622 - - HGNC:44251 1 1p12 long intergenic non-protein coding RNA 622 miscRNA LINC00622 long intergenic non-protein coding RNA 622 O - 20121230 -9606 644246 KANSL1-AS1 - - HGNC:43740 17 17q21.31 KANSL1 antisense RNA 1 miscRNA KANSL1-AS1 KANSL1 antisense RNA 1 O - 20121230 -9606 644248 LOC644248 - - - 4 4q22.1 uncharacterized LOC644248 miscRNA - - - - 20121230 -9606 644249 LOC644249 RP11-195B21.3 - Ensembl:ENSG00000155282|Vega:OTTHUMG00000067320 9 9q12 uncharacterized LOC644249 protein-coding - - - - 20121230 -9606 644253 MAPK8IPP - PRKM8IPP HGNC:6885 17 17q21.31 mitogen-activated protein kinase 8 interacting protein, pseudogene pseudo MAPK8IPP mitogen-activated protein kinase 8 interacting protein, pseudogene O - 20121230 -9606 644256 DND1P2 - - HGNC:31445 17 17q21.31 dead end homolog 1 pseudogene 2 pseudo DND1P2 dead end homolog 1 pseudogene 2 O - 20121230 -9606 644257 LOC644257 - - - 17 - uncharacterized LOC644257 protein-coding - - - - 20120318 -9606 644261 LOC644261 - - - X Xq22.2 solute carrier family 25, member 53 pseudogene pseudo - - - - 20121230 -9606 644265 LOC644265 - - - 2 2q12.1 capping protein (actin filament) muscle Z-line, beta pseudogene pseudo - - - - 20121230 -9606 644269 LOC644269 - - - 6 6q15 G protein pathway suppressor 1 pseudogene pseudo - - - - 20121230 -9606 644277 LOC644277 - - - 11 11q23.1 uncharacterized LOC644277 unknown - - - - 20121230 -9606 644283 FLJ43489 - - - 7 7q11.21 uncharacterized LOC644283 unknown - - - - 20120622 -9606 644285 LOC644285 - - - 5 5q14.3 uncharacterized LOC644285 other - - - - 20120815 -9606 644295 LOC644295 - - - 14 14q12 KIAA1143 pseudogene pseudo - - - - 20121230 -9606 644297 FAM215B - ARL17A-IT1 HGNC:43639 17 17q21.32 family with sequence similarity 215, member B (non-protein coding) unknown FAM215B family with sequence similarity 215, member B (non-protein coding) O - 20121102 -9606 644303 LOC644303 - - - 6 6q22.31 ATP-dependent RNA helicase DDX24-like pseudo - - - - 20121230 -9606 644309 RPS20P19 - RPS20_7_863 HGNC:36503 7 7q36.1 ribosomal protein S20 pseudogene 19 pseudo RPS20P19 ribosomal protein S20 pseudogene 19 O - 20121230 -9606 644310 LOC644310 - - - X Xp11.22 ubiquinol-cytochrome c reductase, complex III subunit X pseudogene pseudo - - - - 20121230 -9606 644314 MT1IP - MT1|MT1I|MTE HGNC:7401|MIM:156355 16 16q13 metallothionein 1I, pseudogene pseudo MT1IP metallothionein 1I, pseudogene O - 20121230 -9606 644315 RPS7P11 - RPS7_6_1552 HGNC:35841 17 17q21.31 ribosomal protein S7 pseudogene 11 pseudo RPS7P11 ribosomal protein S7 pseudogene 11 O - 20121230 -9606 644316 FLJ43315 - - - 22 - asparagine synthetase pseudogene pseudo - - - - 20121230 -9606 644325 ADAM20P3 - - HGNC:43902 4 4q35.2 ADAM metallopeptidase domain 20 pseudogene 3 pseudo ADAM20P3 ADAM metallopeptidase domain 20 pseudogene 3 O - 20121230 -9606 644330 TPM3P5 - - HGNC:39168 19 19q13.2 tropomyosin 3 pseudogene 5 pseudo TPM3P5 tropomyosin 3 pseudogene 5 O - 20121230 -9606 644333 ATP5F1P3 - - HGNC:39744 7 7q36.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 3 pseudo ATP5F1P3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 3 O - 20121230 -9606 644335 LOC644335 - - - 8 8q23.2 smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) pseudogene pseudo - - - - 20121230 -9606 644338 RPL37AP8 hCG_1791193 RPL37A_3_1174 HGNC:35645 11 11q23.1 ribosomal protein L37a pseudogene 8 pseudo RPL37AP8 ribosomal protein L37a pseudogene 8 O - 20121230 -9606 644339 LOC644339 - - - 22 - ankyrin repeat domain-containing protein 20B-like pseudo - - - - 20121209 -9606 644353 ZCCHC18 - PNMA7B|SIZN2 HGNC:32459 X Xq22.2 zinc finger, CCHC domain containing 18 protein-coding ZCCHC18 zinc finger, CCHC domain containing 18 O paraneoplastic Ma antigen family member 7B|putative zinc finger CCHC domain-containing protein 18|zinc finger, CCHC domain containing 12 pseudogene 1|zinc finger, CCHC domain containing 18 pseudogene 20121230 -9606 644354 LOC644354 - - - 17 17q21.31 putative protein FAM215A-like pseudo - - - - 20121209 -9606 644357 LOC644357 - - - 1 1p36.32 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) pseudogene pseudo - - - - 20121230 -9606 644378 GCNT6 - bA421M1.3 HGNC:21623 6 6p24.2 glucosaminyl (N-acetyl) transferase 6 protein-coding GCNT6 glucosaminyl (N-acetyl) transferase 6 O beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 6 20121216 -9606 644383 LOC644383 - - - 12 12q13.2 heat shock transcription factor 2 pseudogene pseudo - - - - 20121230 -9606 644384 RPL23AP71 - RPL23A_33_1349 HGNC:36908 14 14q13.1 ribosomal protein L23a pseudogene 71 pseudo RPL23AP71 ribosomal protein L23a pseudogene 71 O - 20121230 -9606 644387 LOC644387 - - - 7 7q11.21 myelin protein zero-like 1 pseudogene pseudo - - - - 20121230 -9606 644388 RPS2P47 - RPS2_25_1553 HGNC:35785 17 17q21.32 ribosomal protein S2 pseudogene 47 pseudo RPS2P47 ribosomal protein S2 pseudogene 47 O - 20121230 -9606 644390 LOC644390 - - - 15 15q14 heterogeneous nuclear ribonucleoprotein L-like pseudo - - - - 20121230 -9606 644397 LOC644397 - - - 17 17q21.32 leucine rich repeat containing 37A pseudogene pseudo - - - - 20121230 -9606 644403 LARP1BP3 - - HGNC:44085 X Xq26.2 La ribonucleoprotein domain family, member 1B pseudogene 3 pseudo LARP1BP3 La ribonucleoprotein domain family, member 1B pseudogene 3 O - 20121230 -9606 644414 DEFB131 - DEFB-31 HGNC:18108|Ensembl:ENSG00000186146|Vega:OTTHUMG00000160187 4 4p16.1 defensin, beta 131 protein-coding DEFB131 defensin, beta 131 O beta-defensin 131|beta-defensin 31|defensin, beta 31 20121230 -9606 644422 LOC644422 - - - 17 17p11.2 splicing factor, arginine/serine-rich 6 pseudogene pseudo - - - - 20121230 -9606 644425 LOC644425 - - - 10 10q26.3 retinoic acid receptor responder (tazarotene induced) 2 pseudogene pseudo - - - - 20121230 -9606 644429 HMGB3P15 - - HGNC:39307 4 4q22.3 high mobility group box 3 pseudogene 15 pseudo HMGB3P15 high mobility group box 3 pseudogene 15 O - 20121230 -9606 644435 AGGF1P2 XX-2136C111.3 - HGNC:38052 10 10q26.3 angiogenic factor with G patch and FHA domains 1 pseudogene 2 pseudo AGGF1P2 angiogenic factor with G patch and FHA domains 1 pseudogene 2 O - 20121230 -9606 644436 LOC644436 - - - 11 11q12.3 tubulin, alpha 4a pseudogene pseudo - - - - 20121230 -9606 644442 HMGB3P11 - - HGNC:39303 2 2q12.1 high mobility group box 3 pseudogene 11 pseudo HMGB3P11 high mobility group box 3 pseudogene 11 O - 20121230 -9606 644444 TMEM30C - CDC50C HGNC:30443|MIM:611030 3 3q12.1 transmembrane protein 30C pseudo TMEM30C transmembrane protein 30C O - 20121230 -9606 644449 LOC644449 - - - 1 1p34.2 heterogeneous nuclear ribonucleoprotein H1 (H) pseudogene pseudo - - - - 20121230 -9606 644450 LOC644450 - - - 1 1q12 uncharacterized LOC644450 unknown - - - - 20120710 -9606 644451 LOC644451 - - - 10 10q11.23 SHQ1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 644456 LOC644456 - - - 2 2p16.1 IK cytokine, down-regulator of HLA II pseudogene pseudo - - - - 20121230 -9606 644459 LOC644459 - - - 10 10q11.23 BEN domain containing 3 pseudogene pseudo - - - - 20121230 -9606 644462 LOC644462 - - - 1 1p33 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 pseudogene pseudo - - - - 20121230 -9606 644464 RPSAP61 - RPSA_31_1776 HGNC:36760 X Xp11.3 ribosomal protein SA pseudogene 61 pseudo RPSAP61 ribosomal protein SA pseudogene 61 O - 20121230 -9606 644482 LOC644482 - - - 1 1q42.12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa pseudogene pseudo - - - - 20121230 -9606 644491 LOC644491 - - - 4 4q35.2 NMDA receptor regulated 2 pseudogene pseudo - - - - 20121230 -9606 644495 HSP90AB7P - - HGNC:44701 10 10p14 heat shock protein 90kDa alpha (cytosolic), class B member 7, pseudogene pseudo HSP90AB7P heat shock protein 90kDa alpha (cytosolic), class B member 7, pseudogene O - 20121230 -9606 644496 CTSL1P4 - CTSLL4|bA564C4.3 HGNC:23645|Vega:OTTHUMG00000018237 10 10q11.23 cathepsin L1 pseudogene 4 pseudo CTSL1P4 cathepsin L1 pseudogene 4 O - 20121230 -9606 644498 HMGN2P7 - HMGN2L7 HGNC:33575 3 3p25.1 high mobility group nucleosomal binding domain 2 pseudogene 7 pseudo HMGN2P7 high mobility group nucleosomal binding domain 2 pseudogene 7 O - 20121230 -9606 644499 RPL39P21 - RPL39_9_576 HGNC:36218 5 5q13.3 ribosomal protein L39 pseudogene 21 pseudo RPL39P21 ribosomal protein L39 pseudogene 21 O - 20121230 -9606 644502 HMGB3P18 - - HGNC:39310 6 6q22.31 high mobility group box 3 pseudogene 18 pseudo HMGB3P18 high mobility group box 3 pseudogene 18 O - 20121230 -9606 644504 LOC644504 RP1-19N1.1 - - X Xq22.3 novel protein similar to chondroitin sulfate GalNAcT-2 (GALNACT-2) protein-coding - - - - 20121222 -9606 644509 RBM22P6 - - HGNC:39699 X Xp11.22 RNA binding motif protein 22 pseudogene 6 pseudo RBM22P6 RNA binding motif protein 22 pseudogene 6 O - 20121230 -9606 644511 RPL13AP6 - RPL13A_7_1096|bA348N5.5 HGNC:23737 10 10q25.2 ribosomal protein L13a pseudogene 6 pseudo RPL13AP6 ribosomal protein L13a pseudogene 6 O - 20121230 -9606 644517 FAM86MP - - HGNC:44100 4 4p16.1 family with sequence similarity 86, member A pseudogene pseudo FAM86MP family with sequence similarity 86, member M, pseudogene O - 20121230 -9606 644518 LOC644518 - - - X Xp11.22 G antigen family D member 5-like pseudo - - - - 20121209 -9606 644522 RPL31P44 - RPL31_14_1046 HGNC:35523 10 10q21.1 ribosomal protein L31 pseudogene 44 pseudo RPL31P44 ribosomal protein L31 pseudogene 44 O - 20121230 -9606 644524 NKX2-4 RP11-227D2.4 NKX2.4|NKX2D HGNC:7837|MIM:607808|Ensembl:ENSG00000125816|Vega:OTTHUMG00000032022 20 20p11.22 NK2 homeobox 4 protein-coding NKX2-4 NK2 homeobox 4 O NK-2 homolog D|NK2 transcription factor homolog D|NK2 transcription factor related, locus 4|homeobox protein NK-2 homolog D|homeobox protein Nkx-2.4 20121230 -9606 644525 LOC644525 - - - 22 22q11.1 chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121230 -9606 644534 HMGN1P11 - - HGNC:39355 4 4q13.1 high mobility group nucleosome binding domain 1 pseudogene 11 pseudo HMGN1P11 high mobility group nucleosome binding domain 1 pseudogene 11 O - 20121230 -9606 644538 SMIM10 - CXorf69 HGNC:41913|Ensembl:ENSG00000184785 X Xq26.3 small integral membrane protein 10 protein-coding SMIM10 small integral membrane protein 10 O putative uncharacterized protein CXorf69 20121230 -9606 644540 TCEB1P3 RP1-254P11.1 dJ254P11.1 HGNC:29457 10 10p14 transcription elongation factor B (SIII), polypeptide 1 pseudogene 3 pseudo TCEB1P3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 3 O - 20121230 -9606 644548 EXOC5P1 - - HGNC:43870 4 4q13.1 exocyst complex component 5 pseudogene 1 pseudo EXOC5P1 exocyst complex component 5 pseudogene 1 O - 20121230 -9606 644554 LOC644554 - - - 19 19q13.13 uncharacterized LOC644554 miscRNA - - - - 20121230 -9606 644563 LOC644563 - - - X Xq22.3 general transcription factor IIIC, polypeptide 6, alpha 35kDa pseudogene pseudo - - - - 20121230 -9606 644566 LOC644566 - - - 10 10q24.2 tropomyosin 2 (beta) pseudogene pseudo - - - - 20121230 -9606 644573 LOC644573 - - - 10 10q24.31 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 644576 SNX18P9 RP11-250H24.1 - HGNC:39617 9 9q21.11 sorting nexin 18 pseudogene 9 pseudo SNX18P9 sorting nexin 18 pseudogene 9 O - 20121209 -9606 644578 LARP1BP1 - - HGNC:37097 4 4q13.1 La ribonucleoprotein domain family, member 1B pseudogene 1 pseudo LARP1BP1 La ribonucleoprotein domain family, member 1B pseudogene 1 O - 20121230 -9606 644584 LOC644584 - - - 14 14q13.2 Ewing sarcoma breakpoint region 1 pseudogene pseudo - - - - 20121230 -9606 644588 DNAJA1P3 - - HGNC:39339 X Xq22.3 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 3 pseudo DNAJA1P3 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 3 O - 20121230 -9606 644589 LOC644589 - - - 14 14q21.2 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 644591 PPIAL4G RP6-206I17.5 BX284650.5 HGNC:33996|Ensembl:ENSG00000236334|Vega:OTTHUMG00000013629 1 1q21.1 peptidylprolyl isomerase A (cyclophilin A)-like 4G protein-coding PPIAL4G peptidylprolyl isomerase A (cyclophilin A)-like 4G O COAS-2|PPIase A-like 4A|PPIase A-like 4G|chromosome 1-amplified sequence 2|peptidyl-prolyl cis-trans isomerase A-like 4G|peptidylprolyl cis-trans isomerase A-like 4|peptidylprolyl cis-trans isomerase A-like 4A|peptidylprolyl cis-trans isomerase A-like 4G 20121230 -9606 644596 LINC00087 - NCRNA00087 HGNC:34500 X Xq26.3 long intergenic non-protein coding RNA 87 miscRNA LINC00087 long intergenic non-protein coding RNA 87 O - 20121230 -9606 644600 GEMIN8P2 - - HGNC:37977 16 16q21 gem (nuclear organelle) associated protein 8 pseudogene 2 pseudo GEMIN8P2 gem (nuclear organelle) associated protein 8 pseudogene 2 O - 20121230 -9606 644601 BIN2P2 - - HGNC:43661 5 5q13.3 bridging integrator 2 pseudogene 2 pseudo BIN2P2 bridging integrator 2 pseudogene 2 O - 20121230 -9606 644604 EEF1A1P12 - EEF1AL10 HGNC:3195 2 2q12.2 eukaryotic translation elongation factor 1 alpha 1 pseudogene 12 pseudo EEF1A1P12 eukaryotic translation elongation factor 1 alpha 1 pseudogene 12 O - 20121230 -9606 644616 ILF2P2 - - HGNC:44696 14 14q13.2 interleukin enhancer binding factor 2 pseudogene 2 pseudo ILF2P2 interleukin enhancer binding factor 2 pseudogene 2 O - 20121230 -9606 644617 LOC644617 - - - 2 2q12.1 uncharacterized LOC644617 unknown - - - - 20121230 -9606 644619 INTS4L2 - - HGNC:22351 7 7q11.21 integrator complex subunit 4-like 2 pseudo INTS4L2 integrator complex subunit 4-like 2 O - 20121230 -9606 644623 TPTE2P2 RP11-64P12.3 - HGNC:38076 13 13q14.3 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 2 pseudo TPTE2P2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 2 O - 20121230 -9606 644625 FUNDC2P3 - - HGNC:37970 6 6q24.3 FUN14 domain containing 2 pseudogene 3 pseudo FUNDC2P3 FUN14 domain containing 2 pseudogene 3 O - 20121230 -9606 644627 RPL21P107 - RPL21_46_1336 HGNC:36313 13 13q34 ribosomal protein L21 pseudogene 107 pseudo RPL21P107 ribosomal protein L21 pseudogene 107 O - 20121230 -9606 644632 LOC644632 - - - 9 9q21.11 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121230 -9606 644634 LOC644634 - - Ensembl:ENSG00000203815 1 1q21.2 UPF0627 protein ENSP00000358171-like protein-coding - - - - 20121209 -9606 644637 NF1P6 - NF1L4|NF1L6 HGNC:7771 22 22q11.1 neurofibromin 1 pseudogene 6 pseudo NF1P6 neurofibromin 1 pseudogene 6 O - 20121230 -9606 644649 LOC644649 - - - 16 16q21 apolipoprotein O pseudogene pseudo - - - - 20121230 -9606 644651 HMGB1P25 - - HGNC:39116 2 2p25.1 high mobility group box 1 pseudogene 25 pseudo HMGB1P25 high mobility group box 1 pseudogene 25 O - 20121230 -9606 644656 LOC644656 - - - 11 11p15.4 uncharacterized LOC644656 miscRNA - - - - 20121230 -9606 644659 HMGB1P22 - - HGNC:39107 5 5q23.2 high mobility group box 1 pseudogene 22 pseudo HMGB1P22 high mobility group box 1 pseudogene 22 O - 20121230 -9606 644660 RAD21-AS1 - C8orf81|NCRNA00255 HGNC:32158 8 8q24.11 RAD21 antisense RNA 1 miscRNA RAD21-AS1 RAD21 antisense RNA 1 O - 20121230 -9606 644661 LOC644661 - - - 9 9q31.2 importin subunit alpha-2-like pseudo - - - - 20121209 -9606 644662 LOC644662 - - - 3 3q21.3 uncharacterized LOC644662 miscRNA - - - - 20121209 -9606 644667 LOC644667 hCG_1793610 - - 7 7q11.21 golgin A7 pseudogene pseudo - - - - 20121230 -9606 644669 LOC644669 - - - 18 18p11.21 ankyrin repeat domain 30B pseudogene pseudo - - - - 20121230 -9606 644672 CLDN25 hCG_1646420 - HGNC:37218|Ensembl:ENSG00000228607|Vega:OTTHUMG00000168193 11 11q23.2 claudin 25 protein-coding CLDN25 claudin 25 O putative claudin-25 20121230 -9606 644681 LOC644681 - - - 3 3q13.11 synovial sarcoma, X breakpoint 2 interacting protein pseudogene pseudo - - - - 20121230 -9606 644684 LOC644684 - - - 9 9q21.11 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121209 -9606 644686 LOC644686 - - - 2 2p15 uncharacterized LOC644686 unknown - - - - 20120710 -9606 644694 CDRT15P2 - CDRT15L1 HGNC:34074 17 17p12 CMT1A duplicated region transcript 15 pseudogene 2 pseudo CDRT15P2 CMT1A duplicated region transcript 15 pseudogene 2 O - 20121230 -9606 644714 LIMD1-AS1 - - HGNC:44107 3 3p21.31 LIMD1 antisense RNA 1 miscRNA LIMD1-AS1 LIMD1 antisense RNA 1 O - 20121230 -9606 644716 LOC644716 RP11-460E7.5 - - 9 9q21.11 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121209 -9606 644717 LOC644717 - - - X Xq26.3 putative SAGE1-like protein protein-coding - - - - 20121102 -9606 644721 LOC644721 - - - 4 4q23 ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 644727 LOC644727 - - - 8 8q11.23 uncharacterized LOC644727 unknown - - - - 20120511 -9606 644731 IGKV1OR-3 - IGKV1/OR-3|IGKV1OR3|IGKVPZ3 HGNC:5762|IMGT/GENE-DB:IGKV1/OR-3 9 9q12 immunoglobulin kappa variable 1/OR-3 (pseudogene) pseudo IGKV1OR-3 immunoglobulin kappa variable 1/OR-3 (pseudogene) O - 20121102 -9606 644739 WASF4P RP3-393P12.2 WASF4 HGNC:20801 X Xp11.23 WAS protein family, member 4, pseudogene pseudo WASF4P WAS protein family, member 4, pseudogene O - 20121230 -9606 644743 KRT8P47 - - HGNC:44461 1 1p34.1 keratin 8 pseudogene 47 pseudo KRT8P47 keratin 8 pseudogene 47 O - 20121230 -9606 644745 HSPD1P4 - HSPD1-5P HGNC:35146 12 12q13.3 heat shock 60kDa protein 1 (chaperonin) pseudogene 4 pseudo HSPD1P4 heat shock 60kDa protein 1 (chaperonin) pseudogene 4 O - 20121230 -9606 644746 LOC644746 - - - 12 12q23.3 ret finger protein-like 3 pseudogene pseudo - - - - 20121230 -9606 644754 LOC644754 - - - 5 5q23.2 bolA homolog 3 (E. coli) pseudogene pseudo - - - - 20121230 -9606 644758 PABPC1P13 - - HGNC:37995 16 16p11.2 poly(A) binding protein, cytoplasmic 1 pseudogene 13 pseudo PABPC1P13 poly(A) binding protein, cytoplasmic 1 pseudogene 13 O - 20121230 -9606 644759 TMPRSS11GP - - HGNC:42983 4 4q13.2 transmembrane protease, serine 11G, pseudogene pseudo TMPRSS11GP transmembrane protease, serine 11G, pseudogene O - 20121230 -9606 644761 LOC644761 - - - 15 15q22.2 phosphatidylinositol glycan anchor biosynthesis, class H pseudogene pseudo - - - - 20121230 -9606 644762 LOC644762 - - - 5 5q33.1 uncharacterized LOC644762 pseudo - - - - 20121230 -9606 644766 LOC644766 - - - 15 15q14 uncharacterized LOC644766 unknown - - - - 20120622 -9606 644767 FLJ44838 - - - 17 - uncharacterized LOC644767 unknown - - - - 20121230 -9606 644768 SLC9B1P4 - - HGNC:43583 22 22q11.1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 4 pseudo SLC9B1P4 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 4 O - 20121230 -9606 644773 ACTR3BP6 - - HGNC:38683 22 22q11.1 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 6 pseudo ACTR3BP6 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 6 O - 20121230 -9606 644776 LOC644776 - - - 2 2q31.2 RAD52 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 644777 MEP1AP2 - MEP1AL2 HGNC:7017 9 9q21.11 meprin A, alpha pseudogene 2 pseudo MEP1AP2 meprin A, alpha pseudogene 2 O - 20121209 -9606 644790 RPS15AP11 - RPS15A_3_41 HGNC:36707 1 1p34.1 ribosomal protein S15a pseudogene 11 pseudo RPS15AP11 ribosomal protein S15a pseudogene 11 O - 20121230 -9606 644794 LOC644794 - - - 7 7q11.21 uncharacterized LOC644794 unknown - - - - 20121230 -9606 644809 C15orf56 - - HGNC:33868|Ensembl:ENSG00000176753|Vega:OTTHUMG00000172399 15 15q15.1 chromosome 15 open reading frame 56 protein-coding C15orf56 chromosome 15 open reading frame 56 O putative uncharacterized protein C15orf56 20121230 -9606 644815 FAM83G - - HGNC:32554|Ensembl:ENSG00000188522|Vega:OTTHUMG00000059411 17 17p11.2 family with sequence similarity 83, member G protein-coding FAM83G family with sequence similarity 83, member G O protein FAM83G 20121230 -9606 644820 EEF1B2P3 hCG_1983058 EEF1B4 HGNC:3210 X Xp22.11 eukaryotic translation elongation factor 1 beta 2 pseudogene 3 pseudo EEF1B2P3 eukaryotic translation elongation factor 1 beta 2 pseudogene 3 O - 20121230 -9606 644834 RPL36AP36 - RPL36A_13_1022 HGNC:36326 10 10p13 ribosomal protein L36a pseudogene 36 pseudo RPL36AP36 ribosomal protein L36a pseudogene 36 O - 20121230 -9606 644838 LOC644838 - - - 2 2p14 uncharacterized LOC644838 miscRNA - - - - 20121230 -9606 644841 LOC644841 - - - 7 7q36.3 uncharacterized LOC644841 unknown - - - - 20120511 -9606 644844 PHGR1 - - HGNC:37226|Ensembl:ENSG00000233041|Vega:OTTHUMG00000172416 15 15q15.1 proline/histidine/glycine-rich 1 protein-coding PHGR1 proline/histidine/glycine-rich 1 O proline, histidine and glycine-rich protein 1 20121230 -9606 644850 PDCL3P5 RP1-44A20.4 - HGNC:44506 6 6q25.1 phosducin-like 3 pseudogene 5 pseudo PDCL3P5 phosducin-like 3 pseudogene 5 O - 20121230 -9606 644852 LOC644852 - - - 1 1q44 uncharacterized LOC644852 unknown - - - - 20120511 -9606 644861 NBPF13P - - HGNC:31995 1 1q21.1 neuroblastoma breakpoint family, member 13, pseudogene pseudo NBPF13P neuroblastoma breakpoint family, member 13, pseudogene O - 20121230 -9606 644862 RPS28P3 RP11-520H14.1 RPS28_2_172 HGNC:36589 1 1q42.13 ribosomal protein S28 pseudogene 3 pseudo RPS28P3 ribosomal protein S28 pseudogene 3 O - 20121230 -9606 644871 LOC644871 - - - 10 10q21.1 TNF receptor-associated factor 6, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 644873 FLJ33630 - - - 5 5q23.3 uncharacterized LOC644873 miscRNA - - - - 20121230 -9606 644877 LOC644877 - - - 2 2q32.1 calcyclin binding protein pseudogene pseudo - - - - 20121230 -9606 644881 LOC644881 - - - 4 4q35.2 retinoic acid receptor responder (tazarotene induced) 2 pseudogene pseudo - - - - 20121230 -9606 644890 MEIG1 - bA2K17.3 HGNC:23429|MIM:614174|Ensembl:ENSG00000197889 10 10p13 meiosis expressed gene 1 homolog (mouse) protein-coding MEIG1 meiosis expressed gene 1 homolog (mouse) O meiosis expressed gene 1 protein homolog 20121230 -9606 644893 LOC644893 - - - X Xp11.21 melanoma antigen family E, 1 pseudogene pseudo - - - - 20121209 -9606 644896 RPL7P7 - RPL7_1_7 HGNC:36895 1 1p36.23 ribosomal protein L7 pseudogene 7 pseudo RPL7P7 ribosomal protein L7 pseudogene 7 O - 20121230 -9606 644899 TERF2IPP1 - - HGNC:19258 22 22q11.2 telomeric repeat binding factor 2, interacting protein pseudogene 1 pseudo TERF2IPP1 telomeric repeat binding factor 2, interacting protein pseudogene 1 O - 20121230 -9606 644903 FLJ38668 hCG_1993592 - - 2 2q12.3 uncharacterized LOC644903 unknown - - - - 20120622 -9606 644906 LOC644906 - - - 6 6p22.3 malate dehydrogenase 1, NAD (soluble) pseudogene pseudo - - - - 20121230 -9606 644907 RPL32P18 hCG_18290 RPL32_8_807 HGNC:36301 7 7p13 ribosomal protein L32 pseudogene 18 pseudo RPL32P18 ribosomal protein L32 pseudogene 18 O - 20121230 -9606 644909 LOC644909 - - - 17 17p11.2 ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 644911 RPL10P5 - RPL10_1_257 HGNC:35724 2 2q12.3 ribosomal protein L10 pseudogene 5 pseudo RPL10P5 ribosomal protein L10 pseudogene 5 O - 20121230 -9606 644914 H3F3AP6 - p21 HGNC:42982 4 4q31.1 H3 histone, family 3A, pseudogene 6 pseudo H3F3AP6 H3 histone, family 3A, pseudogene 6 O - 20121230 -9606 644915 METTL15P2 - - HGNC:39559 12 12q14.1 methyltransferase like 15 pseudogene 2 pseudo METTL15P2 methyltransferase like 15 pseudogene 2 O - 20121230 -9606 644919 LOC644919 - - - 14 14q21.1 uncharacterized LOC644919 miscRNA - - - - 20121017 -9606 644924 LOC644924 - - - X Xp11.21 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) pseudogene pseudo - - - - 20121230 -9606 644925 LOC644925 - - - 14 14q22.2 uncharacterized LOC644925 unknown - - - - 20121017 -9606 644928 RPS26P15 hCG_2033311 RPS26_1_56 HGNC:35680 1 1p32.2 ribosomal protein S26 pseudogene 15 pseudo RPS26P15 ribosomal protein S26 pseudogene 15 O - 20121230 -9606 644934 RPS26P50 - RPS26_18_1443 HGNC:35615 15 15q22.31 ribosomal protein S26 pseudogene 50 pseudo RPS26P50 ribosomal protein S26 pseudogene 50 O - 20121230 -9606 644935 ELF2P4 - - HGNC:33540 2 2q32.1 E74-like factor 2 pseudogene 4 pseudo ELF2P4 E74-like factor 2 pseudogene 4 O - 20121230 -9606 644936 LOC644936 - - - 5 5q14.1 actin, beta pseudogene pseudo - - - - 20121230 -9606 644937 RPL10P8 - - - 5 5q35.1 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 644943 RASSF10 - - HGNC:33984|MIM:614713 11 11p15.2 Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding RASSF10 Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 O ras association domain-containing protein 10 20121230 -9606 644945 KRT16P3 - - HGNC:37808 17 17p11.2 keratin 16 pseudogene 3 pseudo KRT16P3 keratin 16 pseudogene 3 O - 20121230 -9606 644961 LOC644961 - - - 1 1p36.11 actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 644962 TNRC18P1 - - HGNC:43881 4 4q31.21 TNRC18P1 pseudo TNRC18P1 TNRC18P1 O - 20121230 -9606 644972 RPS3AP26 - RPS3A_11_824 HGNC:36513 7 7q22.1 ribosomal protein S3a pseudogene 26 pseudo RPS3AP26 ribosomal protein S3a pseudogene 26 O - 20121230 -9606 644974 ALG1L2 - - HGNC:37258 3 3q22.1 asparagine-linked glycosylation 1-like 2 protein-coding ALG1L2 asparagine-linked glycosylation 1-like 2 O putative glycosyltransferase ALG1L2 20121230 -9606 644975 FLJ30064 - - - 7 7q21.3 uncharacterized LOC644975 unknown - - - - 20121230 -9606 644988 FAM108A7P - - HGNC:34044 17 17p11.2 family with sequence similarity 108, member A7, pseudogene pseudo FAM108A7P family with sequence similarity 108, member A7, pseudogene O - 20121230 -9606 644990 THRB-AS1 - - HGNC:44515 3 3p24.2 THRB antisense RNA 1 miscRNA THRB-AS1 THRB antisense RNA 1 O - 20121230 -9606 644994 C5orf50 - - HGNC:34440 5 5q35.1 chromosome 5 open reading frame 50 protein-coding C5orf50 chromosome 5 open reading frame 50 O uncharacterized protein C5orf50 20121230 -9606 644996 RPL32P22 - RPL32_14_1010 HGNC:36694 9 9q32 ribosomal protein L32 pseudogene 22 pseudo RPL32P22 ribosomal protein L32 pseudogene 22 O - 20121230 -9606 644997 C1orf200 - - HGNC:32346 1 1p36.22 chromosome 1 open reading frame 200 miscRNA C1orf200 chromosome 1 open reading frame 200 O - 20121230 -9606 644998 KRT8P19 - - HGNC:33371 12 12q14.1 keratin 8 pseudogene 19 pseudo KRT8P19 keratin 8 pseudogene 19 O - 20121230 -9606 645000 RPS3P6 - RPS3_2_1244 HGNC:36061 12 12q14.1 ribosomal protein S3 pseudogene 6 pseudo RPS3P6 ribosomal protein S3 pseudogene 6 O - 20121230 -9606 645001 LOC645001 - - - 19 19q13.2 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 645010 FLJ16126 - - - 1 1p36.22 uncharacterized LOC645010 unknown - - - - 20121230 -9606 645015 ALG1L8P - - HGNC:44377 11 11q13.2 asparagine-linked glycosylation 1-like 8, pseudogene pseudo ALG1L8P asparagine-linked glycosylation 1-like 8, pseudogene O - 20121230 -9606 645018 RPS2P20 - RPS2_7_524 HGNC:35992 4 4q31.21 ribosomal protein S2 pseudogene 20 pseudo RPS2P20 ribosomal protein S2 pseudogene 20 O - 20121230 -9606 645024 GAPDHP59 - GAPDHL3|GAPDL3 HGNC:4152 2 2q32.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 59 pseudo GAPDHP59 glyceraldehyde-3-phosphate dehydrogenase pseudogene 59 O - 20121230 -9606 645027 EVPLL - - HGNC:35236|Ensembl:ENSG00000214860|Vega:OTTHUMG00000059095 17 17p11.2 envoplakin-like protein-coding EVPLL envoplakin-like O envoplakin-like protein 20121230 -9606 645030 LOC645030 - - - 1 1p31.3 uncharacterized LOC645030 protein-coding - - - - 20120720 -9606 645037 GAGE2B - GAGE-2B HGNC:31957|MIM:300726|Ensembl:ENSG00000231850|Vega:OTTHUMG00000067391 X Xp11.23 G antigen 2B protein-coding GAGE2B G antigen 2B O CT4.2|G antigen 2B/2C|GAGE-2|cancer/testis antigen 4.2|g antigen 2A/2B 20121209 -9606 645051 GAGE13 AF235097.8 GAGE12A HGNC:29081|MIM:300734|Ensembl:ENSG00000237597|Vega:OTTHUMG00000024138 X Xp11.23 G antigen 13 protein-coding GAGE13 G antigen 13 O G antigen 12A|GAGE-12A|GAGE-13 20121230 -9606 645054 RPL6P4 - RPL6_3_194 HGNC:36344 2 2p25.1 ribosomal protein L6 pseudogene 4 pseudo RPL6P4 ribosomal protein L6 pseudogene 4 O - 20121230 -9606 645065 RPEP2 - - HGNC:44521 3 3p24.2 ribulose-5-phosphate-3-epimerase pseudogene 2 pseudo RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 O - 20121230 -9606 645073 GAGE12G - AL4|CT4.7|GAGE-12G|RP11-959H17.6 HGNC:31907|MIM:300731|Ensembl:ENSG00000215269|Vega:OTTHUMG00000024148 X Xp11.23 G antigen 12G protein-coding GAGE12G G antigen 12G O cancer/testis antigen 4.7|g antigen 12F/G/I 20121209 -9606 645078 ZCCHC23 - - HGNC:32963 4 4q25 zinc finger, CCHC domain containing 23 unknown ZCCHC23 zinc finger, CCHC domain containing 23 O - 20121211 -9606 645079 FLJ41309 - - - 5 5q14.2 uncharacterized LOC645079 unknown - - - - 20121230 -9606 645084 LOC645084 hCG_2024596 - - 10 10q21.3 DBF4 homolog pseudogene pseudo - - - - 20121230 -9606 645086 LOC645086 - - - 14 14q21.2 chromosome 11 open reading frame 58 pseudogene pseudo - - - - 20121230 -9606 645090 CXorf30 RP11-87M18.1 - HGNC:27298|Ensembl:ENSG00000205081|Vega:OTTHUMG00000021353 X Xp21.1 chromosome X open reading frame 30 protein-coding CXorf30 chromosome X open reading frame 30 O putative uncharacterized protein CXorf30 20121230 -9606 645094 LOC645094 - - - 15 15q15.2 myosin, light chain 12B, regulatory pseudogene pseudo - - - - 20121230 -9606 645100 LOC645100 hCG_1820764 - - 12 12q14.2 hCG1820764 protein-coding - - - - 20120511 -9606 645104 CLRN2 - - HGNC:33939|Ensembl:ENSG00000249581|Vega:OTTHUMG00000160273 4 4p15.32 clarin 2 protein-coding CLRN2 clarin 2 O clarin-2 20121230 -9606 645108 LOC645108 - - - 4 4p15.32 nascent polypeptide-associated complex alpha subunit pseudogene pseudo - - - - 20121230 -9606 645120 AIFM1P1 - - HGNC:44884 10 10p12.31 apoptosis-inducing factor, mitochondrion-associated, 1 pseudogene 1 pseudo AIFM1P1 apoptosis-inducing factor, mitochondrion-associated, 1 pseudogene 1 O - 20121230 -9606 645121 CCNI2 - - HGNC:33869|Ensembl:ENSG00000205089|Vega:OTTHUMG00000059737 5 5q31.1 cyclin I family, member 2 protein-coding CCNI2 cyclin I family, member 2 O cyclin-I2 20121230 -9606 645126 PFN1P6 - - HGNC:42988 1 1q21.2 profilin 1 pseudogene 6 pseudo PFN1P6 profilin 1 pseudogene 6 O - 20121209 -9606 645129 LOC645129 - - - 2 2q13 zinc finger and BTB domain containing 45 pseudogene pseudo - - - - 20121209 -9606 645135 LOC645135 - - - 2 2q13 zinc finger protein 532 pseudogene pseudo - - - - 20121230 -9606 645136 LOC645136 - - - X Xp11.21 v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) pseudogene pseudo - - - - 20121230 -9606 645139 LOC645139 - - - 17 17p11.2 poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 645142 PPIAL4D - - HGNC:33998|Ensembl:ENSG00000256374|Vega:OTTHUMG00000078265 1 1q21.2 peptidylprolyl isomerase A (cyclophilin A)-like 4D protein-coding PPIAL4D peptidylprolyl isomerase A (cyclophilin A)-like 4D O - 20121230 -9606 645145 ZBED1P1 - ZBED1P HGNC:44004 4 4q25 zinc finger, BED-type containing 1 pseudogene 1 pseudo ZBED1P1 zinc finger, BED-type containing 1 pseudogene 1 O - 20121230 -9606 645157 RPL21P61 - RPL21_24_663 HGNC:36712 6 6p22.3 ribosomal protein L21 pseudogene 61 pseudo RPL21P61 ribosomal protein L21 pseudogene 61 O - 20121230 -9606 645158 CBX3P2 - - HGNC:42874 18 18p11.32 chromobox homolog 3 pseudogene 2 pseudo CBX3P2 chromobox homolog 3 pseudogene 2 O - 20121230 -9606 645160 RPL5P30 - RPL5_16_1181 HGNC:35837 11 11q23.3 ribosomal protein L5 pseudogene 30 pseudo RPL5P30 ribosomal protein L5 pseudogene 30 O - 20121230 -9606 645161 RPL12P8 RP11-57G10.7 RPL12_10_1052|bA57G10.3 HGNC:23735 10 10q21.3 ribosomal protein L12 pseudogene 8 pseudo RPL12P8 ribosomal protein L12 pseudogene 8 O - 20121230 -9606 645163 LOC645163 - - - 17 17q22 phosphatidylinositol 4-kinase type 2 beta pseudogene pseudo - - - - 20121230 -9606 645166 LOC645166 - - - 1 1q21.1 lymphocyte-specific protein 1 pseudogene pseudo - - - - 20121230 -9606 645173 RPS2P48 - RPS2_26_1559 HGNC:35985 17 17q22 ribosomal protein S2 pseudogene 48 pseudo RPS2P48 ribosomal protein S2 pseudogene 48 O - 20121230 -9606 645174 RPL21P46 - RPL21_14_463 HGNC:35687 4 4p15.31 ribosomal protein L21 pseudogene 46 pseudo RPL21P46 ribosomal protein L21 pseudogene 46 O - 20121230 -9606 645175 MEMO1P2 - - HGNC:38502 6 6q23.3 mediator of cell motility 1 pseudogene 2 pseudo MEMO1P2 mediator of cell motility 1 pseudogene 2 O - 20121230 -9606 645177 LOC645177 - - - 12 12p12.1 uncharacterized LOC645177 protein-coding - - - - 20121209 -9606 645180 LOC645180 - - - 3 3q13.31 KIAA1539 pseudogene pseudo - - - - 20121230 -9606 645181 LOC645181 - - - 5 5q14.3 PDGFA associated protein 1 pseudogene pseudo - - - - 20121230 -9606 645188 LOC645188 RP1-171K16.5 - Vega:OTTHUMG00000022567 X Xq27.2 uncharacterized LOC645188 unknown - - - - 20121230 -9606 645191 LINGO3 hCG_2040376 LERN2|LRRN6B HGNC:21206|MIM:609792|Ensembl:ENSG00000220008 19 19p13.3 leucine rich repeat and Ig domain containing 3 protein-coding LINGO3 leucine rich repeat and Ig domain containing 3 O hCG2040376|leucine rich repeat neuronal 6B|leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3|leucine-rich repeat neuronal protein 2|leucine-rich repeat neuronal protein 6B 20121230 -9606 645195 LOC645195 - - - 1 1p31.3 uncharacterized LOC645195 unknown - - - - 20120511 -9606 645201 HMGB1P26 - - HGNC:39117 1 1q42.13 high mobility group box 1 pseudogene 26 pseudo HMGB1P26 high mobility group box 1 pseudogene 26 O - 20121230 -9606 645202 LOC645202 - - - 15 15q13.1 golgin A6 family-like protein-coding - - - Golgin subfamily A member 6-like protein 2-like 20121230 -9606 645203 TMEM14D RP11-524O24.3 TMEM14DP|bA524O24.3 HGNC:15660 10 10q21.3 transmembrane protein 14D (pseudogene) pseudo TMEM14D transmembrane protein 14D (pseudogene) O - 20121230 -9606 645204 LOC645204 - - - 15 15q15.3 heterogeneous nuclear ribonucleoprotein M pseudogene pseudo - - - - 20121230 -9606 645206 LINC00693 - - HGNC:44526 3 3p24.1 long intergenic non-protein coding RNA 693 miscRNA LINC00693 long intergenic non-protein coding RNA 693 O - 20121230 -9606 645207 LOC645207 - - - 3 3q13.31 eukaryotic translation initiation factor 4E family member 2 pseudogene pseudo - - - - 20121230 -9606 645212 LOC645212 - - - 15 15q21.1 uncharacterized LOC645212 miscRNA - - - - 20121230 -9606 645220 ADIPOR1P1 - - HGNC:44910 10 10p12.31 adiponectin receptor 1 pseudogene 1 pseudo ADIPOR1P1 adiponectin receptor 1 pseudogene 1 O - 20121230 -9606 645224 RPL29P17 - RPL29_8_665 HGNC:36910 6 6p22.3 ribosomal protein L29 pseudogene 17 pseudo RPL29P17 ribosomal protein L29 pseudogene 17 O - 20121230 -9606 645233 LOC645233 - - - 12 12p12.1 thymine-DNA glycosylase pseudogene pseudo - - - - 20121230 -9606 645249 LOC645249 - - - 7 7q36.3 uncharacterized LOC645249 miscRNA - - - - 20121230 -9606 645251 CBX1P1 - - HGNC:38655 X Xq11.1 chromobox homolog 1 pseudogene 1 pseudo CBX1P1 chromobox homolog 1 pseudogene 1 O - 20121230 -9606 645256 GAPDHP66 - GAPDHL11|GAPDL11 HGNC:4144 18 18p11.31 glyceraldehyde-3-phosphate dehydrogenase pseudogene 66 pseudo GAPDHP66 glyceraldehyde-3-phosphate dehydrogenase pseudogene 66 O - 20121230 -9606 645257 RPL7AP37 - RPL7A_15_759 HGNC:36507 6 6q23.3 ribosomal protein L7a pseudogene 37 pseudo RPL7AP37 ribosomal protein L7a pseudogene 37 O - 20121230 -9606 645261 LOC645261 - - - 5 5q14.3 PP565 unknown - - - - 20120511 -9606 645262 LOC645262 RP11-403I13.9 - Vega:OTTHUMG00000041633 1 1q21.2 phosphodiesterase 4D interacting protein-like protein-coding - - - - 20120726 -9606 645263 LOC645263 hCG_1793639 - - 15 15q21.1 hCG1793639 protein-coding - - - - 20120511 -9606 645264 OSTCP4 - - HGNC:42866 4 4q25 oligosaccharyltransferase complex subunit pseudogene 4 pseudo OSTCP4 oligosaccharyltransferase complex subunit pseudogene 4 O - 20121230 -9606 645266 LOC645266 - - - 9 9q32 PRP4 pre-mRNA processing factor 4 homolog B (yeast) pseudogene pseudo - - - - 20121230 -9606 645269 LOC645269 - - - 10 10q22.1 chromosome 17 open reading frame 61 pseudogene pseudo - - - - 20121230 -9606 645272 LOC645272 - - - 7 7q36.3 adenosylmethionine decarboxylase 1 pseudogene pseudo - - - - 20121230 -9606 645280 SMPD4P1 - - HGNC:39673 22 22q11.21 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 1 pseudo SMPD4P1 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 1 O - 20121230 -9606 645292 HMGB1P6 - HMG1L6|HMGB1L6 HGNC:4998 15 15q23 high mobility group box 1 pseudogene 6 pseudo HMGB1P6 high mobility group box 1 pseudogene 6 O - 20121230 -9606 645296 RPL17P39 hCG_2004593 RPL17_14_1450|hCG2004593 HGNC:36427 15 15q23 ribosomal protein L17 pseudogene 39 pseudo RPL17P39 ribosomal protein L17 pseudogene 39 O - 20121230 -9606 645297 LOC645297 - - - 11 11p15.1 MAS-related GPR, member X2 pseudogene pseudo - - - - 20121230 -9606 645299 RPS10P24 - RPS10_9_1493 HGNC:35989 16 16q22.1 ribosomal protein S10 pseudogene 24 pseudo RPS10P24 ribosomal protein S10 pseudogene 24 O - 20121230 -9606 645311 EEF1GP7 - - HGNC:44562 1 1p32.3 eukaryotic translation elongation factor 1 gamma pseudogene 7 pseudo EEF1GP7 eukaryotic translation elongation factor 1 gamma pseudogene 7 O - 20121230 -9606 645312 GLTPP1 - - HGNC:33991 11 11p15.1 glycolipid transfer protein pseudogene 1 pseudo GLTPP1 glycolipid transfer protein pseudogene 1 O - 20121230 -9606 645313 SCDP1 - SCDP HGNC:10572 17 17p11.2 stearoyl-CoA desaturase (delta-9-desaturase) pseudogene 1 pseudo SCDP1 stearoyl-CoA desaturase (delta-9-desaturase) pseudogene 1 O - 20121230 -9606 645314 LOC645314 - - - 2 2q32.3 DnaJ (Hsp40) homolog, subfamily C, member 17 pseudogene pseudo - - - - 20121230 -9606 645317 CHCHD2P6 - - HGNC:39590 1 1p36.21 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 6 pseudo CHCHD2P6 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 6 O - 20121230 -9606 645318 LOC645318 - - - 10 10q25.1 prohibitin 2 pseudogene pseudo - - - - 20121230 -9606 645319 LOC645319 - - - 11 11p15.1 MAS-related GPR, member X3 pseudogene pseudo - - - - 20121230 -9606 645321 LOC645321 - - - 18 18q23 uncharacterized LOC645321 miscRNA - - - - 20121209 -9606 645323 LINC00461 - - HGNC:42810 5 5q14.3 long intergenic non-protein coding RNA 461 miscRNA LINC00461 long intergenic non-protein coding RNA 461 O - 20121230 -9606 645324 LOC645324 - - - 7 7q11.23 GrpE-like 1, mitochondrial (E. coli) pseudogene pseudo - - - - 20121230 -9606 645326 RPSAP11 - LAMR|LAMR1P11|LAMRL1|LAMRP1|RPSA_9_357 HGNC:6503 3 3p22.3 ribosomal protein SA pseudogene 11 pseudo RPSAP11 ribosomal protein SA pseudogene 11 O - 20121230 -9606 645328 MRPL40P1 - - HGNC:44532 12 12q15 mitochondrial ribosomal protein L40 pseudogene 1 pseudo MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 O - 20121230 -9606 645332 FAM86C2P - - HGNC:42392 11 11q13.2 family with sequence similarity 86, member A pseudogene pseudo FAM86C2P family with sequence similarity 86, member C2, pseudogene O - 20121230 -9606 645339 SNRPD2P2 - - HGNC:38598 1 1q42.2 small nuclear ribonucleoprotein D2 pseudogene 2 pseudo SNRPD2P2 small nuclear ribonucleoprotein D2 pseudogene 2 O - 20121230 -9606 645345 CHCHD2P9 RP11-567E16.1 C9orf49|CHCHD9 HGNC:23676|HPRD:17395 9 9q21.31 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 9 pseudo CHCHD2P9 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 9 O - 20121230 -9606 645348 TUBA3GP - - HGNC:44096 22 22q11.21 tubulin, alpha 3g, pseudogene pseudo TUBA3GP tubulin, alpha 3g, pseudogene O - 20121230 -9606 645354 LOC645354 - - - 1 1p36.21 PRAME family member 14 pseudogene pseudo - - - - 20121230 -9606 645355 LOC645355 - - - 18 18p11.31 uncharacterized LOC645355 miscRNA - - - - 20121230 -9606 645357 LOC645357 tcag7.1093 - - 7 7p22.3 kinesin family member pseudogene pseudo - - - - 20121230 -9606 645359 LOC645359 WI2-2994D6.2 - - 1 1p36.21 PRAME family member protein-coding - - - - 20121216 -9606 645360 HMGB3P5 - - HGNC:39105 10 10q25.2 high mobility group box 3 pseudogene 5 pseudo HMGB3P5 high mobility group box 3 pseudogene 5 O - 20121230 -9606 645367 GGT8P - GGT1P1 HGNC:33438 2 2p11.1 gamma-glutamyltransferase 8 pseudogene pseudo GGT8P gamma-glutamyltransferase 8 pseudogene O - 20121230 -9606 645368 EIF3KP3 - - HGNC:44018 4 4q26 eukaryotic translation initiation factor 3, subunit K pseudogene 3 pseudo EIF3KP3 eukaryotic translation initiation factor 3, subunit K pseudogene 3 O - 20121230 -9606 645369 TMEM200C - TTMA HGNC:37208|Ensembl:ENSG00000206432 18 18p11.31 transmembrane protein 200C protein-coding TMEM200C transmembrane protein 200C O transmembrane protein TTMA|two transmembrane domain family member A|two transmembrane domain-containing family member A 20121230 -9606 645373 RPL21P76 tcag7.1244 RPL21_31_868 HGNC:37042 7 7q36.3 ribosomal protein L21 pseudogene 76 pseudo RPL21P76 ribosomal protein L21 pseudogene 76 O - 20121230 -9606 645381 TLE1P1 - - HGNC:39438 X Xq12 transducin-like enhancer of split 1 pseudogene 1 pseudo TLE1P1 transducin-like enhancer of split 1 pseudogene 1 O - 20121230 -9606 645382 LOC645382 - - - 1 1p36.21 PRAME family member 10 pseudogene pseudo - - - - 20121230 -9606 645387 RPL6P27 - RPL6_10_1582 HGNC:36133 18 18p11.31 ribosomal protein L6 pseudogene 27 pseudo RPL6P27 ribosomal protein L6 pseudogene 27 O - 20121230 -9606 645388 LOC645388 - - - X Xq12 adaptor-related protein complex 1, mu 2 subunit pseudogene pseudo - - - - 20121230 -9606 645397 LOC645397 - - - 11 11p15.1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene pseudo - - - - 20121230 -9606 645398 MKI67IPP2 - - HGNC:44950 5 5q35.2 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 2 pseudo MKI67IPP2 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 2 O - 20121230 -9606 645399 LOC645399 - - - 1 1p36.21 PRAME family member 10 pseudogene pseudo - - - - 20121230 -9606 645402 USP17L4 - - HGNC:37176 8 8p23.1 ubiquitin specific peptidase 17-like family member 4 protein-coding USP17L4 ubiquitin specific peptidase 17-like family member 4 O inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4|ubiquitin specific peptidase 17-like 4 20121230 -9606 645405 LOC645405 - - - 15 15q21.1 oxidation resistance 1 pseudogene pseudo - - - - 20121230 -9606 645412 RPS16P9 - RPS16_5_1659 HGNC:35659 19 19q13.32 ribosomal protein S16 pseudogene 9 pseudo RPS16P9 ribosomal protein S16 pseudogene 9 O - 20121230 -9606 645414 PRAMEF19 - - HGNC:24908|Ensembl:ENSG00000204480|Vega:OTTHUMG00000007919 1 1p36.21 PRAME family member 19 protein-coding PRAMEF19 PRAME family member 19 O - 20121230 -9606 645415 LOC645415 - - - 11 11p15.1 MAS-related GPR, member X1 pseudogene pseudo - - - - 20121230 -9606 645422 RPL10P12 - - - 12 12q15 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 645423 SLC25A51P2 - MCART4P HGNC:23327 18 18p11.23 solute carrier family 25, member 51 pseudogene 2 pseudo SLC25A51P2 solute carrier family 25, member 51 pseudogene 2 O - 20121230 -9606 645425 PRAMEF20 - - HGNC:25224|Ensembl:ENSG00000204478|Vega:OTTHUMG00000007911 1 1p36.21 PRAME family member 20 protein-coding PRAMEF20 PRAME family member 20 O PRAME family member 20/21 20121230 -9606 645426 TMEM191C - - HGNC:33601 22 22q11.21 transmembrane protein 191C protein-coding TMEM191C transmembrane protein 191C O - 20121230 -9606 645427 LOC645427 - - - 17 17p11.2 uncharacterized LOC645427 unknown - - - - 20120511 -9606 645431 FUT8-AS1 - - HGNC:44294 14 14q23.3 FUT8 antisense RNA 1 miscRNA FUT8-AS1 FUT8 antisense RNA 1 O - 20121230 -9606 645432 ARRDC5 - - HGNC:31407|Ensembl:ENSG00000205784|Vega:OTTHUMG00000180250 19 19p13.3 arrestin domain containing 5 protein-coding ARRDC5 arrestin domain containing 5 O arrestin domain-containing protein 5 20121230 -9606 645433 LOC645433 - - - 4 4p15.2 inositol-3-phosphate synthase 1 pseudogene pseudo - - - - 20121230 -9606 645434 LOC645434 hCG_1786283 - - 6 6q24.1 uncharacterized LOC645434 miscRNA - - - - 20121230 -9606 645436 LOC645436 - - - 1 1p32.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 645440 ATP5F1P6 - - HGNC:39747 6 6q24.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 6 pseudo ATP5F1P6 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 6 O - 20121230 -9606 645441 RPL17P6 hCG_22804 RPL17_1_64 HGNC:36520 1 1p31.1 ribosomal protein L17 pseudogene 6 pseudo RPL17P6 ribosomal protein L17 pseudogene 6 O - 20121230 -9606 645443 ATP5A1P3 - ATP5AP3 HGNC:829 16 16q22.2 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 3 pseudo ATP5A1P3 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 3 O - 20121230 -9606 645452 RPL21P68 - RPL21_25_668 HGNC:35720 6 6p22.2 ribosomal protein L21 pseudogene 68 pseudo RPL21P68 ribosomal protein L21 pseudogene 68 O - 20121230 -9606 645453 RLIMP3 - - HGNC:39684 15 15q21.2 ring finger protein, LIM domain interacting pseudogene 3 pseudo RLIMP3 ring finger protein, LIM domain interacting pseudogene 3 O - 20121230 -9606 645455 CEP170P1 - CEP170L|FAM68B|KIAA0470L HGNC:28364 4 4q26 centrosomal protein 170kDa pseudogene 1 pseudo CEP170P1 centrosomal protein 170kDa pseudogene 1 O - 20121230 -9606 645460 FLJ44342 - - - 17 17q22 uncharacterized LOC645460 unknown - - - - 20121230 -9606 645468 LOC645468 - - - 6 6q27 insulin-like growth factor 2 mRNA binding protein 3 pseudogene pseudo - - - - 20121230 -9606 645474 S100A11P3 - - HGNC:37842 11 11q13.4 S100 calcium binding protein A11 pseudogene 3 pseudo S100A11P3 S100 calcium binding protein A11 pseudogene 3 O - 20121230 -9606 645481 LOC645481 - - - 4 4p15.2 zinc finger protein 248 pseudogene pseudo - - - - 20121230 -9606 645482 LOC645482 - - - 9 9q33.2 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 pseudogene pseudo - - - - 20121230 -9606 645485 LOC645485 - - - 12 12p11.21 uncharacterized LOC645485 unknown - - - - 20120508 -9606 645486 LOC645486 - - - 15 15q21.2 adenosylhomocysteinase pseudogene pseudo - - - - 20121230 -9606 645503 LOC645503 - - - 6 6q24.1 SUMO-activating enzyme subunit 2-like pseudo - - - - 20121209 -9606 645506 GYG1P3 - - HGNC:39711 1 1p32.3 glycogenin 1 pseudogene 3 pseudo GYG1P3 glycogenin 1 pseudogene 3 O - 20121230 -9606 645513 LOC645513 - - - 4 4q26 uncharacterized LOC645513 miscRNA - - - - 20121230 -9606 645520 FAM138A RP11-34P13.4 F379 HGNC:32334 1 1p36.33 family with sequence similarity 138, member A miscRNA FAM138A family with sequence similarity 138, member A O - 20121209 -9606 645524 FLJ36840 - - - 7 - uncharacterized LOC645524 unknown - - - - 20120622 -9606 645528 LINC00264 - C10orf50|NCRNA00264|bA128B16.2 HGNC:17776 10 10p12.1 long intergenic non-protein coding RNA 264 miscRNA LINC00264 long intergenic non-protein coding RNA 264 O - 20121230 -9606 645529 LOC645529 - - - 2 2q14.1 acrosin pseudogene pseudo - - - - 20121230 -9606 645538 GOT2P1 RP4-633H17.1 GOT2L1 HGNC:4434 1 1p32.3 glutamic-oxaloacetic transaminase 2 pseudogene 1 pseudo GOT2P1 glutamic-oxaloacetic transaminase 2 pseudogene 1 O - 20121230 -9606 645544 LOC645544 - - - 11 11q13.4 uncharacterized LOC645544 pseudo - - - - 20121209 -9606 645545 IGBP1P2 hCG_1642624 - HGNC:43611 17 17q22 immunoglobulin (CD79A) binding protein 1 pseudogene 2 pseudo IGBP1P2 immunoglobulin (CD79A) binding protein 1 pseudogene 2 O - 20121230 -9606 645548 HSPD1P6 - HSPD1-6P|HSPDP6 HGNC:5267 3 3p22.2 heat shock 60kDa protein 1 (chaperonin) pseudogene 6 pseudo HSPD1P6 heat shock 60kDa protein 1 (chaperonin) pseudogene 6 O - 20121230 -9606 645553 LOC645553 - - - 19 19q13.32 uncharacterized LOC645553 unknown - - - - 20120508 -9606 645558 FAM90A22P - FAM90A22 HGNC:32270 8 8p23.1 family with sequence similarity 90, member A22 pseudogene pseudo FAM90A22P family with sequence similarity 90, member A22, pseudogene O - 20121209 -9606 645560 ATP5C1P1 - ATP5C2|ATP5CL2 HGNC:834 14 14q22.2 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene 1 pseudo ATP5C1P1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene 1 O - 20121230 -9606 645561 LOC645561 - - - 7 - carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like pseudo - - - - 20121209 -9606 645566 FLJ45482 - - - 7 - uncharacterized LOC645566 unknown - - - - 20120909 -9606 645571 PRADC1P1 - - HGNC:44534 3 3p22.2 protease-associated domain containing 1 pseudogene 1 pseudo PRADC1P1 protease-associated domain containing 1 pseudogene 1 O - 20121230 -9606 645572 FAM90A23P - FAM90A23 HGNC:32271 8 8p23.1 family with sequence similarity 90, member A23 pseudogene pseudo FAM90A23P family with sequence similarity 90, member A23, pseudogene O - 20121209 -9606 645573 RPS4XP19 - RPS4P19|RPS4X_9_1583 HGNC:36872 18 18p11.22 ribosomal protein S4X pseudogene 19 pseudo RPS4XP19 ribosomal protein S4X pseudogene 19 O - 20121230 -9606 645579 EIF4BP6 - - HGNC:37939 7 7q22.2 eukaryotic translation initiation factor 4B pseudogene 6 pseudo EIF4BP6 eukaryotic translation initiation factor 4B pseudogene 6 O - 20121230 -9606 645587 LINC00614 RP13-27G4.1 C10orf52 HGNC:30165 10 10p12.1 long intergenic non-protein coding RNA 614 protein-coding LINC00614 long intergenic non-protein coding RNA 614 O Putative uncharacterized protein C10orf52 20121021 -9606 645591 LHFPL3-AS1 - - HGNC:40341 7 7q22.1 LHFPL3 antisense RNA 1 miscRNA LHFPL3-AS1 LHFPL3 antisense RNA 1 O - 20121230 -9606 645598 LOC645598 - - - 11 11p14.3 widely interspaced zinc finger motifs pseudogene pseudo - - - - 20121230 -9606 645619 AK4P3 - AK3L2|AK3L2P HGNC:21596 12 12p11.21 adenylate kinase 4 pseudogene 3 pseudo AK4P3 adenylate kinase 4 pseudogene 3 O - 20121230 -9606 645626 LOC645626 RP11-38M15.10-001 - - 13 13q11 coiled-coil domain containing 29-like pseudo - - - - 20121230 -9606 645630 RPS13P8 - RPS13_5_1432 HGNC:36400 15 15q21.2 ribosomal protein S13 pseudogene 8 pseudo RPS13P8 ribosomal protein S13 pseudogene 8 O - 20121230 -9606 645634 ANO7P1 RP4-733M16.3 ANO7L1|C1orf224|TMEM16M HGNC:32248 1 1p36.13 anoctamin 7 pseudogene 1 protein-coding ANO7P1 anoctamin 7 pseudogene 1 O anoctamin 7-like 1|transmembrane protein 16M 20121216 -9606 645638 LOC645638 - - - 17 17q23.1 WDNM1-like pseudogene pseudo - - - - 20121230 -9606 645641 MESTP3 - - HGNC:38553 4 4p15.1 mesoderm specific transcript pseudogene 3 pseudo MESTP3 mesoderm specific transcript pseudogene 3 O - 20121230 -9606 645644 FLJ42627 - - - 16 16p13.3 uncharacterized LOC645644 miscRNA - - - - 20121230 -9606 645645 LOC645645 - - - 1 1q42.3 uncharacterized LOC645645 unknown - - - - 20120511 -9606 645646 FAM32C - - HGNC:34239 10 10q22.2 family with sequence similarity 32, member C (pseudogene) pseudo FAM32C family with sequence similarity 32, member C (pseudogene) O - 20121230 -9606 645651 FAM90A14P - FAM90A14 HGNC:32262|MIM:613050 8 8p23.1 putative protein FAM90A14 pseudo FAM90A14P family with sequence similarity 90, member A14, pseudogene O - 20121230 -9606 645652 MT1XP1 - MTL1 HGNC:7442 1 1p36.13 metallothionein 1X pseudogene 1 pseudo MT1XP1 metallothionein 1X pseudogene 1 O - 20121230 -9606 645654 RPL31P48 - RPL31_25_1257 HGNC:36129 12 12q21.1 ribosomal protein L31 pseudogene 48 pseudo RPL31P48 ribosomal protein L31 pseudogene 48 O - 20121230 -9606 645656 RPSAP56 - RPSA_23_1496 HGNC:36018 16 16q22.3 ribosomal protein SA pseudogene 56 pseudo RPSAP56 ribosomal protein SA pseudogene 56 O - 20121230 -9606 645668 TUFMP1 - TUFML HGNC:12421 17 17q11.1 Tu translation elongation factor, mitochondrial pseudogene 1 pseudo TUFMP1 Tu translation elongation factor, mitochondrial pseudogene 1 O - 20121230 -9606 645676 ASH1L-AS1 - - HGNC:44146 1 1q22 ASH1L antisense RNA 1 miscRNA ASH1L-AS1 ASH1L antisense RNA 1 O - 20121230 -9606 645680 LOC645680 - - - 7 7q21.12 karyopherin alpha 2 pseudogene pseudo - - - - 20121230 -9606 645682 POU5F1P4 - POU5FLC1 HGNC:33310 1 1q22 POU class 5 homeobox 1 pseudogene 4 pseudo POU5F1P4 POU class 5 homeobox 1 pseudogene 4 O - 20121230 -9606 645683 RPL13AP3 - RPL13A_11_1370 HGNC:23539 14 14q22.3 ribosomal protein L13a pseudogene 3 pseudo RPL13AP3 ribosomal protein L13a pseudogene 3 O - 20121230 -9606 645686 GTF2IP3 RP11-301J16.2 - HGNC:42640 13 13q12.11 general transcription factor IIi, pseudogene 3 pseudo GTF2IP3 general transcription factor IIi, pseudogene 3 O - 20121230 -9606 645687 LINC00520 - C14orf34 HGNC:19843 14 14q22.3 long intergenic non-protein coding RNA 520 miscRNA LINC00520 long intergenic non-protein coding RNA 520 O - 20121230 -9606 645688 RPL12P38 - RPL12_14_1564 HGNC:36838 17 17q23.2 ribosomal protein L12 pseudogene 38 pseudo RPL12P38 ribosomal protein L12 pseudogene 38 O - 20121230 -9606 645691 LOC645691 - - - 2 2q33.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 645693 EEF1A1P22 - - HGNC:37895 15 15q21.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 22 pseudo EEF1A1P22 eukaryotic translation elongation factor 1 alpha 1 pseudogene 22 O - 20121230 -9606 645694 HTR5BP - 5-HT5B|GPR134|HTR5B HGNC:16291 2 2q14.1 5-hydroxytryptamine (serotonin) receptor 5B, pseudogene pseudo HTR5BP 5-hydroxytryptamine (serotonin) receptor 5B, pseudogene O - 20121230 -9606 645700 ZNF890P hCG_1786132 - HGNC:38691 7 7p22.1 zinc finger protein 890, pseudogene pseudo ZNF890P zinc finger protein 890, pseudogene O - 20121230 -9606 645713 RPS10P23 - RPS10_13_1498 HGNC:36657 16 16q23.1 ribosomal protein S10 pseudogene 23 pseudo RPS10P23 ribosomal protein S10 pseudogene 23 O - 20121230 -9606 645715 EEF1A1P24 - - HGNC:37897 3 3p22.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 24 pseudo EEF1A1P24 eukaryotic translation elongation factor 1 alpha 1 pseudogene 24 O - 20121230 -9606 645739 LOC645739 RP11-408E5.4 - - 13 13q12.11 hCG1646718 unknown - - - - 20121216 -9606 645740 NOS2P1 - NOS2C HGNC:7875|MIM:600720 17 17q11.2 nitric oxide synthase 2 pseudogene 1 pseudo NOS2P1 nitric oxide synthase 2 pseudogene 1 O - 20121230 -9606 645744 TAF5LP1 - HsT33855|TAF5LP HGNC:24115 17 17q12 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa pseudogene 1 pseudo TAF5LP1 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa pseudogene 1 O - 20121230 -9606 645745 MT1P2 - - HGNC:31864 1 1q43 metallothionein 1 pseudogene 2 pseudo MT1P2 metallothionein 1 pseudogene 2 O - 20121230 -9606 645749 LOC645749 - - - 6 6q24.3 zinc finger protein 131 pseudogene pseudo - - - - 20121230 -9606 645752 LOC645752 - - - 15 15q24.3 golgin A6 family, member A pseudogene pseudo - - - - 20121230 -9606 645754 LOC645754 - - - 17 17q11.2 lectin, galactoside-binding, soluble, 9 pseudogene pseudo - - - - 20121230 -9606 645763 LOC645763 - - - 5 5p15.2 intersectin 1 (SH3 domain protein) pseudogene pseudo - - - - 20121230 -9606 645769 LOC645769 - - - X Xp22.2 uncharacterized LOC645769 unknown - - - - 20120511 -9606 645771 PARP4P2 RP11-385E5.2 - HGNC:37760 13 13q12.11 poly (ADP-ribose) polymerase family, member 4 pseudogene 2 pseudo PARP4P2 poly (ADP-ribose) polymerase family, member 4 pseudogene 2 O - 20121230 -9606 645773 LOC645773 - - - 4 4q28.1 tubulin, alpha 4a pseudogene pseudo - - - - 20121230 -9606 645784 ANKRD36BP2 - - HGNC:33607 2 2p11.2 ankyrin repeat domain 36B pseudogene 2 pseudo ANKRD36BP2 ankyrin repeat domain 36B pseudogene 2 O - 20121230 -9606 645798 RPL3P3 - RPL3_2_1372 HGNC:23550 14 14q22.3 ribosomal protein L3 pseudogene 3 pseudo RPL3P3 ribosomal protein L3 pseudogene 3 O - 20121230 -9606 645805 DAZAP2P1 - - HGNC:43869 2 2q33.1 DAZ associated protein 2 pseudogene 1 pseudo DAZAP2P1 DAZ associated protein 2 pseudogene 1 O - 20121230 -9606 645807 RPL5P10 - RPL5_4_365 HGNC:36846 3 3p22.1 ribosomal protein L5 pseudogene 10 pseudo RPL5P10 ribosomal protein L5 pseudogene 10 O - 20121230 -9606 645808 HSPD1P2 - HSP60P2|HSPD-9P|HSPDP2 HGNC:5263 8 8p23.1 heat shock 60kDa protein 1 (chaperonin) pseudogene 2 pseudo HSPD1P2 heat shock 60kDa protein 1 (chaperonin) pseudogene 2 O - 20121230 -9606 645809 RPL23AP56 - RPL23A_21_952 HGNC:35516 8 8q24.22 ribosomal protein L23a pseudogene 56 pseudo RPL23AP56 ribosomal protein L23a pseudogene 56 O - 20121230 -9606 645811 CCDC154 - C16orf29 HGNC:34454|Ensembl:ENSG00000197599|Vega:OTTHUMG00000154097 16 16p13.3 coiled-coil domain containing 154 protein-coding CCDC154 coiled-coil domain containing 154 O coiled-coil domain-containing protein 154 20121230 -9606 645832 SEBOX - OG-9|OG9|OG9X HGNC:32942|MIM:610975|Ensembl:ENSG00000109072|Vega:OTTHUMG00000171160 17 17q11.2 SEBOX homeobox protein-coding SEBOX SEBOX homeobox O homeobox OG-9|homeobox protein SEBOX|skin-, embryo-, brain- and oocyte-specific homeobox 20121230 -9606 645834 KRT8P15 - - HGNC:33367 2 2q33.1 keratin 8 pseudogene 15 pseudo KRT8P15 keratin 8 pseudogene 15 O - 20121230 -9606 645836 USP17L3 - USP17B|USP17F HGNC:37175 8 8p23.1 ubiquitin specific peptidase 17-like family member 3 protein-coding USP17L3 ubiquitin specific peptidase 17-like family member 3 O deubiquitinating enzyme 17-like protein 3|ubiquitin carboxyl-terminal hydrolase 17-like protein 3|ubiquitin specific peptidase 17-like 3|ubiquitin thioesterase 17-like protein 3|ubiquitin-specific-processing protease 17-like protein 3 20121230 -9606 645840 TXNRD3NB - TR2IT1|TXNRD3IT1|TXNRD3NT1 HGNC:33870|Ensembl:ENSG00000206483 3 3q21.3 thioredoxin reductase 3 neighbor protein-coding TXNRD3NB thioredoxin reductase 3 neighbor O TXNRD3 neighbor gene protein|protein TXNRD3NB|thioredoxin reductase 2 intronic transcript 1|thioredoxin reductase 3 intronic transcript 1|thioredoxin reductase 3 neighbor gene protein|thioredoxin reductase 3 new transcript 1 20121230 -9606 645841 TMEM248P1 - - HGNC:44053 4 4q28.1 transmembrane protein 248 pseudogene 1 pseudo TMEM248P1 transmembrane protein 248 pseudogene 1 O - 20121230 -9606 645843 TMEM14E UNQ9344/PRO34067 - HGNC:34386|Ensembl:ENSG00000221962|Vega:OTTHUMG00000159652 3 3q25.1 transmembrane protein 14E protein-coding TMEM14E transmembrane protein 14E O - 20121230 -9606 645846 RPL7AP58 - RPL7A_20_1131 HGNC:36586 11 11p14.1 ribosomal protein L7a pseudogene 58 pseudo RPL7AP58 ribosomal protein L7a pseudogene 58 O - 20121230 -9606 645852 LOC645852 - - - 3 3q21.3 splicing factor 3a, subunit 2, 66kDa pseudogene pseudo - - - - 20121230 -9606 645853 LOC645853 - - - 5 5q35.3 apolipoprotein A-I binding protein pseudogene pseudo - - - - 20121230 -9606 645857 RPS10P17 - RPS10_5_1013 HGNC:35562 9 9q33.3 ribosomal protein S10 pseudogene 17 pseudo RPS10P17 ribosomal protein S10 pseudogene 17 O - 20121230 -9606 645859 CCDC58P1 - - HGNC:32457 18 18p11.22 coiled-coil domain containing 58 pseudogene 1 pseudo CCDC58P1 coiled-coil domain containing 58 pseudogene 1 O - 20121230 -9606 645862 CHCHD4P1 - - HGNC:44489 7 7q21.2 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 1 pseudo CHCHD4P1 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 1 O - 20121230 -9606 645864 MAGEB17 - - HGNC:17418|MIM:300763|Ensembl:ENSG00000182798|Vega:OTTHUMG00000021188 X Xp22.2 melanoma antigen family B, 17 protein-coding MAGEB17 melanoma antigen family B, 17 O melanoma antigen family B, 17 (pseudogene) 20121230 -9606 645877 LOC645877 - - - 15 15q21.3 acyl-CoA binding domain containing 7 pseudogene pseudo - - - - 20121230 -9606 645879 FAM90A12P - FAM90A12 HGNC:32260|MIM:613048 8 8p23.1 Putative protein FAM90A12 pseudo FAM90A12P family with sequence similarity 90, member A12, pseudogene O - 20121209 -9606 645884 RPS7P5 - RPS7_2_183 HGNC:37037 1 1q43 ribosomal protein S7 pseudogene 5 pseudo RPS7P5 ribosomal protein S7 pseudogene 5 O - 20121230 -9606 645895 LOC645895 - - - 8 8q13.1 uncharacterized LOC645895 unknown - - - - 20120710 -9606 645899 RPS28P4 - RPS28_1_332 HGNC:36208 2 2q37.1 ribosomal protein S28 pseudogene 4 pseudo RPS28P4 ribosomal protein S28 pseudogene 4 O - 20121230 -9606 645900 LOC645900 - - - 1 1q21.3 lysosomal protein transmembrane 4 beta pseudogene pseudo - - - - 20121230 -9606 645916 RPS11P2 - RPS11_1_184 HGNC:37007 1 1q43 ribosomal protein S11 pseudogene 2 pseudo RPS11P2 ribosomal protein S11 pseudogene 2 O - 20121230 -9606 645918 RPS13P7 - RPS13_3_1434 HGNC:36310 15 15q21.3 ribosomal protein S13 pseudogene 7 pseudo RPS13P7 ribosomal protein S13 pseudogene 7 O - 20121230 -9606 645922 S100A7L2 - S100a7b HGNC:21655|Ensembl:ENSG00000197364 1 1q21.3 S100 calcium binding protein A7-like 2 protein-coding S100A7L2 S100 calcium binding protein A7-like 2 O S100 calcium-binding protein A7-like 2|protein S100-A7-like 2 20121230 -9606 645927 MCFD2P1 - C6orf44|MCFD2L|NUCB2-L|dJ153G14.2 HGNC:21582 6 6p22.1 multiple coagulation factor deficiency 2 pseudogene 1 pseudo MCFD2P1 multiple coagulation factor deficiency 2 pseudogene 1 O - 20121230 -9606 645930 HMGN2P31 - - HGNC:39398 9 9p24.1 high mobility group nucleosomal binding domain 2 pseudogene 31 pseudo HMGN2P31 high mobility group nucleosomal binding domain 2 pseudogene 31 O - 20121230 -9606 645931 FEN1P1 - FENL1 HGNC:3651 1 1p22.2 flap structure-specific endonuclease 1 pseudogene 1 pseudo FEN1P1 flap structure-specific endonuclease 1 pseudogene 1 O - 20121230 -9606 645937 LOC645937 - - - 9 9q22.1 zinc finger protein 598 pseudogene pseudo - - - - 20121230 -9606 645938 LOC645938 - - - X Xq13.2 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo - - - - 20121230 -9606 645939 PRKRIRP8 - - HGNC:39572 1 1q43 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 8 pseudo PRKRIRP8 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 8 O - 20121230 -9606 645940 HNRNPA1P32 - - HGNC:44958 10 10p11.23 heterogeneous nuclear ribonucleoprotein A1 pseudogene 32 pseudo HNRNPA1P32 heterogeneous nuclear ribonucleoprotein A1 pseudogene 32 O - 20121230 -9606 645949 LOC645949 - - - 2 2p24.1 uncharacterized LOC645949 miscRNA - - - - 20121230 -9606 645950 HNRNPA1P1 - HNRPA1P1|b34I8.2|hnRNPA1-Lp HGNC:13957 6 6p22.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 1 pseudo HNRNPA1P1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 1 O - 20121230 -9606 645954 SVILP1 hCG_1783494 - HGNC:44959 10 10p11.23 supervillin pseudogene 1 pseudo SVILP1 supervillin pseudogene 1 O - 20121230 -9606 645957 RPS3P7 - RPS3_3_1501 HGNC:36056 16 16q23.1 ribosomal protein S3 pseudogene 7 pseudo RPS3P7 ribosomal protein S3 pseudogene 7 O - 20121230 -9606 645958 RPS18P9 - RPS18_6_767 HGNC:36483 6 6q25.1 ribosomal protein S18 pseudogene 9 pseudo RPS18P9 ribosomal protein S18 pseudogene 9 O - 20121230 -9606 645960 LOC645960 - - - 8 8p23.1 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 645961 SPATA31C2 - FAM75C2 HGNC:24508 9 9q22.1 SPATA31 subfamily C, member 2 protein-coding SPATA31C2 SPATA31 subfamily C, member 2 O family with sequence similarity 75, member C2|uncharacterized protein LOC645961 20121230 -9606 645962 RPL23AP20 RP11-553N16.5 RPL23A_6_188 HGNC:36622 1 1q43 ribosomal protein L23a pseudogene 20 pseudo RPL23AP20 ribosomal protein L23a pseudogene 20 O - 20121230 -9606 645965 LOC645965 RP11-216N14.7 - - 1 1q21.3 adipose differentiation-related protein pseudogene pseudo - - - - 20121230 -9606 645967 LOC645967 - - - 6 6q25.1 uncharacterized LOC645967 unknown - - - - 20120511 -9606 645968 RPS3AP25 tcag7.1261 RPS3A_9_820 HGNC:36801 7 7q21.3 ribosomal protein S3a pseudogene 25 pseudo RPS3AP25 ribosomal protein S3a pseudogene 25 O - 20121230 -9606 645969 LOC645969 - - - 9 9p24.1 selenoprotein T pseudogene pseudo - - - - 20121230 -9606 645973 ATP5F1P2 - - HGNC:39743 7 7q21.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 2 pseudo ATP5F1P2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 2 O - 20121230 -9606 645974 PABPC1L2B RP11-493K23.2 RBM32B HGNC:31852|Ensembl:ENSG00000184388|Vega:OTTHUMG00000021823 X Xq13.2 poly(A) binding protein, cytoplasmic 1-like 2B protein-coding PABPC1L2B poly(A) binding protein, cytoplasmic 1-like 2B O RNA binding motif protein 32B|RNA-binding motif protein 32|RNA-binding protein 32|polyadenylate-binding protein 1-like 2 20121230 -9606 645978 LOC645978 - - - 2 2q33.3 alkaline ceramidase 2 pseudogene pseudo - - - - 20121230 -9606 645979 RPS26P31 - RPS26_8_840 HGNC:36614 7 7q31.32 ribosomal protein S26 pseudogene 31 pseudo RPS26P31 ribosomal protein S26 pseudogene 31 O - 20121230 -9606 645980 CFL1P4 - CFLL4|CFLP4 HGNC:1880 1 1q43 cofilin 1 (non-muscle) pseudogene 4 pseudo CFL1P4 cofilin 1 (non-muscle) pseudogene 4 O - 20121230 -9606 645984 LOC645984 - - - 10 10p11.23 uncharacterized LOC645984 protein-coding - - - - 20120511 -9606 645993 RPL31P57 hCG_1793136 RPL31_21_1570 HGNC:35703 17 17q23.3 ribosomal protein L31 pseudogene 57 pseudo RPL31P57 ribosomal protein L31 pseudogene 57 O - 20121230 -9606 645996 NAP1L6 - - HGNC:31706 X Xq13.2 nucleosome assembly protein 1-like 6 pseudo NAP1L6 nucleosome assembly protein 1-like 6 O - 20121230 -9606 645998 RPL10AP5 RP11-513D4.2 RPL10A_2_189 HGNC:36770 1 1q43 ribosomal protein L10a pseudogene 5 pseudo RPL10AP5 ribosomal protein L10a pseudogene 5 O - 20121230 -9606 646000 SLC35G4 - AMAC1L1 HGNC:31043 18 18p11.21 solute carrier family 35, member G4 protein-coding SLC35G4 solute carrier family 35, member G4 O acyl-malonyl condensing enzyme 1-like 1|acyl-malonyl-condensing enzyme 1-like protein 1|protein AMAC1L1|solute carrier family 35 member G4 20121230 -9606 646012 LOC646012 - - - 5 5p15.1 aurora kinase A interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 646013 RPS17P3 - RPS17B|RPS17L2|RPS17_7_1537 HGNC:10399 17 17q11.2 ribosomal protein S17 pseudogene 3 pseudo RPS17P3 ribosomal protein S17 pseudogene 3 O - 20121230 -9606 646014 LOC646014 - - - 17 17q24.1 uncharacterized LOC646014 protein-coding - - - - 20121018 -9606 646016 YWHAZP8 - - HGNC:39029 X Xq13.2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 8 pseudo YWHAZP8 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 8 O - 20121230 -9606 646019 CBY3 - - HGNC:33278|Ensembl:ENSG00000204659|Vega:OTTHUMG00000163163 5 5q35.3 chibby homolog 3 (Drosophila) protein-coding CBY3 chibby homolog 3 (Drosophila) O protein chibby homolog 3 20121230 -9606 646021 LOC646021 - - - 17 17q11.2 uncharacterized LOC646021 protein-coding - - - - 20121209 -9606 646023 ADORA2A-AS1 - C22orf45 HGNC:37122 22 22q11.23 ADORA2A antisense RNA 1 miscRNA ADORA2A-AS1 ADORA2A antisense RNA 1 O - 20121230 -9606 646024 RAET1K - - HGNC:16797 6 6q25.1 retinoic acid early transcript 1K pseudogene pseudo RAET1K retinoic acid early transcript 1K pseudogene O - 20121230 -9606 646029 FLJ38894 - - - 11 11q14.1 uncharacterized LOC646029 other - - - - 20120710 -9606 646030 LOC646030 - - - 17 17q11.2 leucine-rich repeat-containing protein 37A2-like pseudo - - - - 20121230 -9606 646034 LOC646034 - - - 10 10p11.22 uncharacterized LOC646034 unknown - - - - 20120511 -9606 646044 LOC646044 - - - 18 18p11.21 single stranded DNA binding protein 4 pseudogene pseudo - - - - 20121230 -9606 646049 HMGN2P20 - - HGNC:39385 2 2p23.3 high mobility group nucleosomal binding domain 2 pseudogene 20 pseudo HMGN2P20 high mobility group nucleosomal binding domain 2 pseudogene 20 O - 20121230 -9606 646050 LOC646050 - - - 2 2p25.1 axin interactor, dorsalization associated pseudogene pseudo - - - - 20121230 -9606 646052 SLC20A1P3 - - HGNC:42538 15 15q11.1 solute carrier family 20 (phosphate transporter), member 1 pseudogene 3 pseudo SLC20A1P3 solute carrier family 20 (phosphate transporter), member 1 pseudogene 3 O - 20121230 -9606 646057 LOC646057 - - - 15 15q11.1 Ig heavy chain V region 5A-like other - - - - 20121209 -9606 646058 LOC646058 - - - 5 5q35.3 chromosome 4 open reading frame 27 pseudogene pseudo - - - - 20121230 -9606 646065 PMM2P2 - - HGNC:21753 18 18p11.21 phosphomannomutase 2 pseudogene 2 pseudo PMM2P2 phosphomannomutase 2 pseudogene 2 O - 20121230 -9606 646066 LOC646066 - - - 5 5p15.1 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene pseudo - - - - 20121230 -9606 646070 LOC646070 - - - 6 6p25.3 capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 646071 LOC646071 - - - 15 15q11.1 disintegrin and metalloproteinase domain-containing protein 21-like pseudo - - - - 20121230 -9606 646074 POM121L10P - - HGNC:35448 22 22q11.23 POM121 transmembrane nucleoporin-like 10, pseudogene pseudo POM121L10P POM121 transmembrane nucleoporin-like 10, pseudogene O - 20121230 -9606 646077 RPL29P23 - RPL29_11_1134 HGNC:35946 11 11p13 ribosomal protein L29 pseudogene 23 pseudo RPL29P23 ribosomal protein L29 pseudogene 23 O - 20121230 -9606 646080 RAB11FIP1P1 RP3-368A4.3 - HGNC:42366 X Xq13.2 RAB11 family interacting protein 1 (class I) pseudogene 1 pseudo RAB11FIP1P1 RAB11 family interacting protein 1 (class I) pseudogene 1 O - 20121230 -9606 646083 PA2G4P6 - PA2G4L3 HGNC:32219 9 9q22.2 proliferation-associated 2G4 pseudogene 6 pseudo PA2G4P6 proliferation-associated 2G4 pseudogene 6 O - 20121230 -9606 646085 PSMC1P7 - - HGNC:39782 3 3q26.1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 7 pseudo PSMC1P7 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 7 O - 20121230 -9606 646086 WDR45LP1 - - HGNC:26605 17 17q11.2 WDR45-like pseudogene 1 pseudo WDR45LP1 WDR45-like pseudogene 1 O - 20121230 -9606 646087 LOC646087 - - - 9 9p23 IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 646090 RHPN2P1 - - HGNC:37708 15 15q11.1 rhophilin, Rho GTPase binding protein 2 pseudogene 1 pseudo RHPN2P1 rhophilin, Rho GTPase binding protein 2 pseudogene 1 O - 20121230 -9606 646093 RPS8P7 - RPS8_3_645 HGNC:35795 5 5q35.3 ribosomal protein S8 pseudogene 7 pseudo RPS8P7 ribosomal protein S8 pseudogene 7 O - 20121230 -9606 646096 CHEK2P2 - - HGNC:43578 15 15q11.1 checkpoint kinase 2 pseudogene 2 pseudo CHEK2P2 checkpoint kinase 2 pseudogene 2 O - 20121230 -9606 646103 LOC646103 - - - 5 5p15.1 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene pseudo - - - - 20121230 -9606 646104 RPL32P16 RP1-292B18.1 RPL32_7_768 HGNC:36086 6 6q25.1 ribosomal protein L32 pseudogene 16 pseudo RPL32P16 ribosomal protein L32 pseudogene 16 O - 20121230 -9606 646108 RPS7P14 - RPS7_5_1787 HGNC:36602 X Xq13.2 ribosomal protein S7 pseudogene 14 pseudo RPS7P14 ribosomal protein S7 pseudogene 14 O - 20121230 -9606 646112 LOC646112 - - - 11 11q14.1 origin recognition complex, subunit 3-like (yeast) pseudogene pseudo - - - - 20121230 -9606 646113 LINC00643 - - HGNC:44296 14 14q23.2 long intergenic non-protein coding RNA 643 miscRNA LINC00643 long intergenic non-protein coding RNA 643 O - 20121230 -9606 646114 LOC646114 - - - 9 9p23 A kinase (PRKA) anchor protein 8 pseudogene pseudo - - - - 20121230 -9606 646119 RPS8P4 - RPS8_2_1103 HGNC:17478 10 10q26.11 ribosomal protein S8 pseudogene 4 pseudo RPS8P4 ribosomal protein S8 pseudogene 4 O - 20121230 -9606 646120 LOC646120 - - - 11 11p13 Spi-C transcription factor (Spi-1/PU.1 related) pseudogene pseudo - - - - 20121230 -9606 646127 LOC646127 - - - X Xq13.3 telomeric repeat-binding factor 1-like pseudo - - - - 20121209 -9606 646140 LOC646140 - - - 16 16p13.3 ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 646161 RPL26P21 - RPL26_11_785 HGNC:35497 7 7p21.2 ribosomal protein L26 pseudogene 21 pseudo RPL26P21 ribosomal protein L26 pseudogene 21 O - 20121230 -9606 646164 DDX39AP1 RP11-274P12.2 - HGNC:39664 13 13q12.11 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A pseudogene 1 pseudo DDX39AP1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A pseudogene 1 O - 20121230 -9606 646168 LOC646168 - - - 3 3q26.1 uncharacterized LOC646168 pseudo - - - - 20121230 -9606 646171 EIF4A2P1 - - HGNC:37929 18 18p11.21 eukaryotic translation initiation factor 4A2 pseudogene 1 pseudo EIF4A2P1 eukaryotic translation initiation factor 4A2 pseudogene 1 O - 20121230 -9606 646174 C16orf90 - - HGNC:34455|Ensembl:ENSG00000215131|Vega:OTTHUMG00000154627 16 16p13.3 chromosome 16 open reading frame 90 protein-coding C16orf90 chromosome 16 open reading frame 90 O uncharacterized protein C16orf90 20121230 -9606 646175 RPL36AP48 - RPL36A_23_1571 HGNC:36721 17 17q24.2 ribosomal protein L36a pseudogene 48 pseudo RPL36AP48 ribosomal protein L36a pseudogene 48 O - 20121230 -9606 646177 SPATA31E2P - FAM75E2P HGNC:43827 15 15q11.2 SPATA31 subfamily E, member 2, pseudogene pseudo SPATA31E2P SPATA31 subfamily E, member 2, pseudogene O - 20121230 -9606 646179 LOC646179 hCG_2045614 - - 2 2q14.3 hCG2045614 unknown - - - - 20120318 -9606 646189 RPL18AP13 - RPL18A_8_1622 HGNC:36739 19 19p13.2 ribosomal protein L18a pseudogene 13 pseudo RPL18AP13 ribosomal protein L18a pseudogene 13 O - 20121230 -9606 646192 NOP56P1 XXbac-BCX419D21.1 NOL5B|NOL5BP|NOP56-L|dJ207F6.1 HGNC:13962 6 6p22.1 NOP56 ribonucleoprotein pseudogene 1 pseudo NOP56P1 NOP56 ribonucleoprotein pseudogene 1 O - 20121230 -9606 646193 LOC646193 hCG_1992287 - - X Xq13.3 C5orf44 pseudogene pseudo - - - - 20121230 -9606 646195 RPS28P7 - RPS28_3_1160 HGNC:35787 11 11q14.1 ribosomal protein S28 pseudogene 7 pseudo RPS28P7 ribosomal protein S28 pseudogene 7 O - 20121230 -9606 646196 SMARCE1P6 - - HGNC:39737 2 2p23.3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 6 pseudo SMARCE1P6 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 6 O - 20121230 -9606 646197 LOC646197 - - - 8 8q21.11 heat shock protein 90kDa alpha (cytosolic), class B member 1 pseudogene pseudo - - - - 20121230 -9606 646201 BASP1P1 - - HGNC:39418 13 13q12.12 brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo BASP1P1 brain abundant, membrane attached signal protein 1 pseudogene 1 O - 20121230 -9606 646202 TLK2P1 - TLK2ps1 HGNC:18048 17 17q12 tousled-like kinase 2 pseudogene 1 pseudo TLK2P1 tousled-like kinase 2 pseudogene 1 O - 20121230 -9606 646203 LOC646203 - - - 18 18p11.21 mRNA turnover 4 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 646208 NUS1P2 - - HGNC:38473 13 13q12.12 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 2 pseudo NUS1P2 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 646213 SS18L2P1 - - HGNC:44965 10 10p11.21 synovial sarcoma translocation gene on chromosome 18-like 2 pseudogene 1 pseudo SS18L2P1 synovial sarcoma translocation gene on chromosome 18-like 2 pseudogene 1 O - 20121230 -9606 646214 LOC646214 - - - 15 15q11.2 p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene pseudo - - - - 20121230 -9606 646216 LOC646216 - - - 22 22q12.1 ribosomal protein S3A pseudogene pseudo - - - - 20121230 -9606 646218 PRDX2P2 - - HGNC:44967 10 10p11.21 peroxiredoxin 2 pseudogene 2 pseudo PRDX2P2 peroxiredoxin 2 pseudogene 2 O - 20121230 -9606 646227 LOC646227 hCG_18385 - - 5 5q35.3 cAMP-regulated phosphoprotein 19 pseudogene pseudo - - - - 20121230 -9606 646231 AGPAT5P1 - - HGNC:37709 Y Yp11.2 1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1 pseudo AGPAT5P1 1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1 O - 20121230 -9606 646233 RPS27P10 - RPS27_2_322 HGNC:35961 2 2q34 ribosomal protein S27 pseudogene 10 pseudo RPS27P10 ribosomal protein S27 pseudogene 10 O - 20121230 -9606 646241 LOC646241 - - - 5 5p15.1 uncharacterized LOC646241 unknown - - - - 20120511 -9606 646243 CXADRP2 - - HGNC:33973 15 15q11.2 coxsackie virus and adenovirus receptor pseudogene 2 pseudo CXADRP2 coxsackie virus and adenovirus receptor pseudogene 2 O - 20121230 -9606 646249 PCED1CP hCG_1645016 - HGNC:44083 2 2q34 PC-esterase domain containing 1C, pseudogene pseudo PCED1CP PC-esterase domain containing 1C, pseudogene O - 20121230 -9606 646255 RPL19P16 - RPL19_5_1105 HGNC:36596 10 10q26.12 ribosomal protein L19 pseudogene 16 pseudo RPL19P16 ribosomal protein L19 pseudogene 16 O - 20121230 -9606 646260 SAR1AP1 RP1-88J8.2 SAR1P1|SARAP|SARAP1|dJ88J8.3|hsSARA-p HGNC:13983 6 6p22.1 SAR1 homolog A (S. cerevisiae) pseudogene 1 pseudo SAR1AP1 SAR1 homolog A (S. cerevisiae) pseudogene 1 O - 20121230 -9606 646262 LACTBL1 - - HGNC:35445|Ensembl:ENSG00000215906|Vega:OTTHUMG00000003228 1 1p36.12 lactamase, beta-like 1 protein-coding LACTBL1 lactamase, beta-like 1 O Putative beta-lactamase-like protein ENSP00000383859|putative beta-lactamase-like 1 20121230 -9606 646268 LOC646268 hCG_1654703 - - 1 1q23.1 hCG1654703 miscRNA - - - - 20121230 -9606 646269 RPS4XP8 - RPS4P8|RPS4X_5_772 HGNC:36683 6 6q25.2 ribosomal protein S4X pseudogene 8 pseudo RPS4XP8 ribosomal protein S4X pseudogene 8 O - 20121230 -9606 646270 ELL2P1 - - HGNC:39343 1 1q23.1 elongation factor, RNA polymerase II, 2 pseudogene 1 pseudo ELL2P1 elongation factor, RNA polymerase II, 2 pseudogene 1 O - 20121230 -9606 646273 HSPD1P15 - HSPD1-15P HGNC:35130 5 5p14.3 heat shock 60kDa protein 1 (chaperonin) pseudogene 15 pseudo HSPD1P15 heat shock 60kDa protein 1 (chaperonin) pseudogene 15 O - 20121230 -9606 646274 LOC646274 - - - 6 6q25.2 stathmin-like 2 pseudogene pseudo - - - - 20121230 -9606 646278 LOC646278 - - - 15 15q13.1 programmed cell death 6 interacting protein pseudogene pseudo - - - - 20121230 -9606 646282 AZGP1P1 - - HGNC:911 7 7q22.1 alpha-2-glycoprotein 1, zinc-binding pseudogene 1 pseudo AZGP1P1 alpha-2-glycoprotein 1, zinc-binding pseudogene 1 O - 20121230 -9606 646294 RPS2P29 - RPS2_9_695 HGNC:36011 6 6p21.1 ribosomal protein S2 pseudogene 29 pseudo RPS2P29 ribosomal protein S2 pseudogene 29 O - 20121230 -9606 646300 COL6A4P2 - COL6A4 HGNC:38501 3 3q22.1 collagen, type VI, alpha 4 pseudogene 2 pseudo COL6A4P2 collagen, type VI, alpha 4 pseudogene 2 O - 20121230 -9606 646309 NAMPTL RP11-92J19.4 PBEF2|bA92J19.4 HGNC:17633 10 10p11.21 nicotinamide phosphoribosyltransferase-like pseudo NAMPTL nicotinamide phosphoribosyltransferase-like O - 20121230 -9606 646316 TERF1P3 - - HGNC:38499 4 4q28.3 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 3 pseudo TERF1P3 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 3 O - 20121230 -9606 646324 LINC00607 - - HGNC:43944 2 2q35 long intergenic non-protein coding RNA 607 miscRNA LINC00607 long intergenic non-protein coding RNA 607 O - 20121230 -9606 646329 LOC646329 hCG_2038586 - - 7 7q32.3 uncharacterized LOC646329 miscRNA - - - - 20121230 -9606 646330 LOC646330 - - - 1 1p36.11 BTB (POZ) domain containing 6 pseudogene pseudo - - - - 20121230 -9606 646346 RPL7P58 - - - X Xp21.3 ribosomal protein L7 pseudogene pseudo - - - - 20121230 -9606 646347 LOC646347 - - - 1 1q23.3 spermine synthase pseudogene pseudo - - - - 20121230 -9606 646348 ARL6IP1P2 - - HGNC:44971 10 10p11.21 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 2 pseudo ARL6IP1P2 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 2 O - 20121230 -9606 646358 LOC646358 - - - 15 15q22.31 DnaJ (Hsp40) homolog, subfamily B, member 14 pseudogene pseudo - - - - 20121230 -9606 646359 TERF1P2 - - HGNC:38110 18 18p11.21 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 2 pseudo TERF1P2 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 2 O - 20121230 -9606 646360 TMEM161BP1 hCG_25653 - HGNC:44973 10 10p11.21 transmembrane protein 161B pseudogene 1 pseudo TMEM161BP1 transmembrane protein 161B pseudogene 1 O - 20121230 -9606 646362 FTH1P13 - FTHL13|FTHP3 HGNC:3983 14 14q23.3 ferritin, heavy polypeptide 1 pseudogene 13 pseudo FTH1P13 ferritin, heavy polypeptide 1 pseudogene 13 O - 20121230 -9606 646366 MAS1LP1 XXbac-BPG13B8.9 MAS1LP HGNC:33448|Vega:OTTHUMG00000086553 6 6p22.1 MAS1 oncogene-like pseudogene 1 pseudo MAS1LP1 MAS1 oncogene-like pseudogene 1 O - 20121230 -9606 646370 IGHV1OR15-3 - IGHV1OR153 HGNC:5565|IMGT/GENE-DB:IGHV1/OR15-3 15 15q11.2 immunoglobulin heavy variable 1/OR15-3 (pseudogene) pseudo IGHV1OR15-3 immunoglobulin heavy variable 1/OR15-3 (pseudogene) O - 20121230 -9606 646377 LOC646377 - - - 1 1q23.1 pyrin and HIN domain family, member 1 pseudogene pseudo - - - - 20121230 -9606 646378 DDX18P5 - - HGNC:33968 11 11q24.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 5 pseudo DDX18P5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 5 O - 20121230 -9606 646379 IGHV1OR15-4 - IGHV1OR154 HGNC:5566|IMGT/GENE-DB:IGHV1/OR15-4 15 15q11.2 immunoglobulin heavy variable 1/OR15-4 (pseudogene) pseudo IGHV1OR15-4 immunoglobulin heavy variable 1/OR15-4 (pseudogene) O - 20121102 -9606 646382 DPPA5P1 - - HGNC:43752 19 19q13.41 developmental pluripotency associated 5 pseudogene 1 pseudo DPPA5P1 developmental pluripotency associated 5 pseudogene 1 O - 20121230 -9606 646383 FLJ34521 - - - 11 11q24.3 uncharacterized LOC646383 unknown - - - - 20120622 -9606 646388 LOC646388 - - - 11 11p12 zinc finger, CCHC domain containing 9 pseudogene pseudo - - - - 20121230 -9606 646390 IRX1P1 RP11-534K14.1 - HGNC:33315 13 13q12.12 iroquois homeobox 1 pseudogene 1 pseudo IRX1P1 iroquois homeobox 1 pseudogene 1 O - 20121230 -9606 646392 LOC646392 - - - 3 3q22.1 nuclear import 7 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 646396 REREP3 - - HGNC:38797 15 15q11.2 arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 pseudo REREP3 arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 O - 20121230 -9606 646405 TPTE2P1 RP11-756A22.3 - HGNC:35196 13 13q12.13 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo TPTE2P1 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 O - 20121230 -9606 646408 LOC646408 - - - 22 22q12.1 chromosome 9 open reading frame 16 pseudogene pseudo - - - - 20121230 -9606 646409 DGAT2L7P - DGAT2L7 HGNC:44367|Ensembl:ENSG00000205267 7 7q22.1 diacylglycerol O-acyltransferase 2-like 7, pseudogene protein-coding DGAT2L7P diacylglycerol O-acyltransferase 2-like 7, pseudogene O diacylglycerol O-acyltransferase 2 like protein 7|diacylglycerol O-acyltransferase 2-like 7 pseudogene|putative diacylglycerol O-acyltransferase 2-like protein 7|putative diacylglycerol O-acyltransferase 2-like protein DGAT2L7P 20121230 -9606 646417 RPL29P5 - RPL29_2_63 HGNC:36786 1 1p31.1 ribosomal protein L29 pseudogene 5 pseudo RPL29P5 ribosomal protein L29 pseudogene 5 O - 20121230 -9606 646424 SPINK8 - - HGNC:33160|Ensembl:ENSG00000229453|Vega:OTTHUMG00000156832 3 3p21.31 serine peptidase inhibitor, Kazal type 8 (putative) protein-coding SPINK8 serine peptidase inhibitor, Kazal type 8 (putative) O serine protease inhibitor Kazal-type 8 20121230 -9606 646430 LOC646430 - - - 1 1q23.2 amyloid P component, serum pseudogene pseudo - - - - 20121230 -9606 646433 RPL32P19 hCG_1794003 RPL32_10_878 HGNC:36743 8 8p22 ribosomal protein L32 pseudogene 19 pseudo RPL32P19 ribosomal protein L32 pseudogene 19 O - 20121230 -9606 646440 CCT3P1 - CCT3-1P HGNC:35129 8 8p22 chaperonin containing TCP1, subunit 3 (gamma) pseudogene 1 pseudo CCT3P1 chaperonin containing TCP1, subunit 3 (gamma) pseudogene 1 O - 20121230 -9606 646442 SNX19P3 - - HGNC:38116 18 18p11.21 sorting nexin 19 pseudogene 3 pseudo SNX19P3 sorting nexin 19 pseudogene 3 O - 20121230 -9606 646446 RPL27P2 - RPL27_1_105 HGNC:36948 1 1q23.2 ribosomal protein L27 pseudogene 2 pseudo RPL27P2 ribosomal protein L27 pseudogene 2 O - 20121230 -9606 646450 ARIH2OS - C3orf71 HGNC:34425|Ensembl:ENSG00000221883|Vega:OTTHUMG00000156672 3 3p21.31 ariadne homolog 2 opposite strand protein-coding ARIH2OS ariadne homolog 2 opposite strand O uncharacterized protein C3orf71 20121230 -9606 646457 C19orf67 - - HGNC:34354|Ensembl:ENSG00000188032|Vega:OTTHUMG00000169303 19 19p13.12 chromosome 19 open reading frame 67 protein-coding C19orf67 chromosome 19 open reading frame 67 O UPF0575 protein C19orf67|UPF0575 protein C19orf67-like 20121230 -9606 646463 UBE2HP1 - UBE2HP HGNC:31079 8 8q21.13 ubiquitin-conjugating enzyme E2H pseudogene 1 pseudo UBE2HP1 ubiquitin-conjugating enzyme E2H pseudogene 1 O - 20121230 -9606 646467 CNN2P1 - - HGNC:39526 22 22q12.2 calponin 2 pseudogene 1 pseudo CNN2P1 calponin 2 pseudogene 1 O - 20121230 -9606 646471 LOC646471 - - - 1 1p36.11 uncharacterized LOC646471 miscRNA - - - - 20121230 -9606 646476 RPL7AP39 - RPL7A_12_828 HGNC:35881 7 7q22.1 ribosomal protein L7a pseudogene 39 pseudo RPL7AP39 ribosomal protein L7a pseudogene 39 O - 20121230 -9606 646479 ADAM24P - ADAM24 HGNC:203 8 8p22 ADAM metallopeptidase domain 24, pseudogene pseudo ADAM24P ADAM metallopeptidase domain 24, pseudogene O - 20121230 -9606 646480 FABP9 - PERF|PERF15|T-FABP HGNC:3563|Ensembl:ENSG00000205186|Vega:OTTHUMG00000164601 8 8q21.13 fatty acid binding protein 9, testis protein-coding FABP9 fatty acid binding protein 9, testis O TLBP|fatty acid-binding protein 9|lipid-binding protein|testis lipid binding protein|testis lipid-binding protein|testis-type fatty acid-binding protein 20121230 -9606 646482 LOC646482 - - - 13 13q12.13 uncharacterized LOC646482 unknown - - - - 20120511 -9606 646483 RPL6P19 - RPL6_14_853 HGNC:36754 7 7q33 ribosomal protein L6 pseudogene 19 pseudo RPL6P19 ribosomal protein L6 pseudogene 19 O - 20121230 -9606 646484 LOC646484 - - - 4 4q31.1 uncharacterized LOC646484 unknown - - - - 20120511 -9606 646486 FABP12 - - HGNC:34524|Ensembl:ENSG00000197416|Vega:OTTHUMG00000164679 8 8q21.13 fatty acid binding protein 12 protein-coding FABP12 fatty acid binding protein 12 O Probable fatty acid-binding protein ENSP00000353650|fatty acid binding protein ORF|fatty acid-binding protein 12|intracellular fatty acid-binding protein FABP12 20121230 -9606 646489 RPL21P70 - RPL21_4_205 HGNC:37024 2 2p23.1 ribosomal protein L21 pseudogene 70 pseudo RPL21P70 ribosomal protein L21 pseudogene 70 O - 20121230 -9606 646498 LOC646498 - - Ensembl:ENSG00000236980|Vega:OTTHUMG00000156816 3 3p21.31 uncharacterized LOC646498 protein-coding - - - uncharacterized protein LOC646498 20121230 -9606 646505 LOC646505 - - - 9 9p22.1 CDC-like kinase 3 pseudogene pseudo - - - - 20121230 -9606 646506 LOC646506 - - - X Xp21.1 lysosomal-associated membrane protein 1 pseudogene pseudo - - - - 20121230 -9606 646507 SPATA31E3P - FAM75E3P HGNC:43828 15 15q11.2 SPATA31 subfamily E, member 3, pseudogene pseudo SPATA31E3P SPATA31 subfamily E, member 3, pseudogene O - 20121230 -9606 646508 FAM90A27P - - HGNC:43617 19 19q13.42 family with sequence similarity 90, member A27, pseudogene pseudo FAM90A27P family with sequence similarity 90, member A27, pseudogene O - 20121230 -9606 646513 LOC646513 UNQ1945 - - 22 22q12.2 VLGN1945 unknown - - - - 20121230 -9606 646517 LOC646517 - - - 6 6p12.3 Wilms tumor 1 associated protein pseudogene pseudo - - - - 20121230 -9606 646520 SUCLA2P1 - Em:AB014080.4|SUCLA2P HGNC:21632 6 6p21.33 succinate-CoA ligase, ADP-forming, beta subunit pseudogene 1 pseudo SUCLA2P1 succinate-CoA ligase, ADP-forming, beta subunit pseudogene 1 O - 20121230 -9606 646522 LOC646522 - - - 11 11q25 uncharacterized LOC646522 unknown - - - - 20120511 -9606 646526 HMGB1P18 - - HGNC:39100 1 1p31.1 high mobility group box 1 pseudogene 18 pseudo HMGB1P18 high mobility group box 1 pseudogene 18 O - 20121230 -9606 646527 RPS3AP44 - RPS3A_18_1305 HGNC:36761 13 13q12.13 ribosomal protein S3a pseudogene 44 pseudo RPS3AP44 ribosomal protein S3a pseudogene 44 O - 20121230 -9606 646531 YBX1P2 - - HGNC:22635 7 7q22.3 Y box binding protein 1 pseudogene 2 pseudo YBX1P2 Y box binding protein 1 pseudogene 2 O - 20121230 -9606 646532 RPL19P5 - RPL19_2_325 HGNC:36325 2 2q35 ribosomal protein L19 pseudogene 5 pseudo RPL19P5 ribosomal protein L19 pseudogene 5 O - 20121230 -9606 646535 LOC646535 - - - 11 11p11.2 uncharacterized LOC646535 pseudo - - - - 20121209 -9606 646538 RPL7P10 - RPL7_2_66 HGNC:36599 1 1p31.1 ribosomal protein L7 pseudogene 10 pseudo RPL7P10 ribosomal protein L7 pseudogene 10 O - 20121230 -9606 646543 LOC646543 - - Ensembl:ENSG00000254918|Vega:OTTHUMG00000167123 11 11q25 uncharacterized LOC646543 protein-coding - - - - 20121209 -9606 646548 LOC646548 - - - 14 14q24.2 ADAM metallopeptidase domain 20 pseudogene pseudo - - - - 20121230 -9606 646555 LOC646555 - - - 1 1p31.1 AT rich interactive domain 3B pseudogene pseudo - - - - 20121230 -9606 646557 OSTCP3 - - HGNC:42865 19 19q13.42 oligosaccharyltransferase complex subunit pseudogene 3 pseudo OSTCP3 oligosaccharyltransferase complex subunit pseudogene 3 O - 20121230 -9606 646566 RPLP1P12 - RPLP1_6_1670 HGNC:36858 19 19q13.42 ribosomal protein, large, P1 pseudogene 12 pseudo RPLP1P12 ribosomal protein, large, P1 pseudogene 12 O - 20121230 -9606 646567 OSTCP2 - - HGNC:42864 1 1p36.11 oligosaccharyltransferase complex subunit pseudogene 2 protein-coding OSTCP2 oligosaccharyltransferase complex subunit pseudogene 2 O oligosaccharyltransferase complex subunit OSTC-like 20121209 -9606 646572 CHCHD3P3 - - HGNC:44699 1 1p36.11 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 3 pseudo CHCHD3P3 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 3 O - 20121230 -9606 646575 CYP4F10P - - HGNC:39943 19 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 10, pseudogene pseudo CYP4F10P cytochrome P450, family 4, subfamily F, polypeptide 10, pseudogene O - 20121230 -9606 646576 HHIP-AS1 - - HGNC:44182 4 4q31.21 HHIP antisense RNA 1 miscRNA HHIP-AS1 HHIP antisense RNA 1 O - 20121230 -9606 646577 HMGB1P16 - - HGNC:39098 X Xp21.1 high mobility group box 1 pseudogene 16 pseudo HMGB1P16 high mobility group box 1 pseudogene 16 O - 20121230 -9606 646581 IFNWP2 RP11-354P17.12-001 - HGNC:5452 9 9p21.3 interferon, omega 1 pseudogene 2 pseudo IFNWP2 interferon, omega 1 pseudogene 2 O - 20121230 -9606 646583 RPS4XP18 - RPS4P18|RPS4X_10_1587 HGNC:36170 18 18q11.2 ribosomal protein S4X pseudogene 18 pseudo RPS4XP18 ribosomal protein S4X pseudogene 18 O - 20121230 -9606 646588 LOC646588 - - - 7 7p15.2 uncharacterized LOC646588 protein-coding - - - - 20120511 -9606 646592 ZNF652P1 - ZNF652P HGNC:35166 3 3p21.31 zinc finger protein 652 pseudogene 1 pseudo ZNF652P1 zinc finger protein 652 pseudogene 1 O - 20121230 -9606 646595 UBE2CP2 - - HGNC:43551 18 18q11.2 ubiquitin-conjugating enzyme E2C pseudogene 2 pseudo UBE2CP2 ubiquitin-conjugating enzyme E2C pseudogene 2 O - 20121230 -9606 646597 CHMP1AP1 - - HGNC:39514 1 1p35.3 charged multivesicular body protein 1A pseudogene 1 pseudo CHMP1AP1 charged multivesicular body protein 1A pseudogene 1 O - 20121230 -9606 646600 C3orf65 - - HGNC:32674 3 3q27.2 chromosome 3 open reading frame 65 miscRNA C3orf65 chromosome 3 open reading frame 65 O - 20121230 -9606 646603 C4orf51 - - HGNC:37264|Ensembl:ENSG00000237136|Vega:OTTHUMG00000161367 4 4q31.21 chromosome 4 open reading frame 51 protein-coding C4orf51 chromosome 4 open reading frame 51 O uncharacterized protein C4orf51 20121230 -9606 646609 LOC646609 - - - 9 9p21.3 chloride intracellular channel 4 pseudogene pseudo - - - - 20121230 -9606 646612 EEF1A1P25 - - HGNC:37898 3 3q22.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 25 pseudo EEF1A1P25 eukaryotic translation elongation factor 1 alpha 1 pseudogene 25 O - 20121230 -9606 646614 LOC646614 - - - 7 7q31.1 budding uninhibited by benzimidazoles 3 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 646616 LOC646616 - - - 5 5p13.3 transmembrane protein 183A pseudogene pseudo - - - - 20121230 -9606 646619 ATP5G1P3 - - HGNC:39506 3 3q22.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 3 pseudo ATP5G1P3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 3 O - 20121230 -9606 646620 RPL3P8 - RPL3_4_835 HGNC:35498 7 7q31.1 ribosomal protein L3 pseudogene 8 pseudo RPL3P8 ribosomal protein L3 pseudogene 8 O - 20121230 -9606 646624 RPL27P4 - RPL27_1_28 HGNC:35503 1 1p35.3 ribosomal protein L27 pseudogene 4 pseudo RPL27P4 ribosomal protein L27 pseudogene 4 O - 20121230 -9606 646625 PRHOXNB - URAD HGNC:17785|Ensembl:ENSG00000183463 13 13q12.2 parahox cluster neighbor protein-coding PRHOXNB parahox cluster neighbor O OHCU decarboxylase|parahox neighbor|putative 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 20121230 -9606 646626 LOC646626 - - - 1 1p22.3 uncharacterized LOC646626 miscRNA - - - - 20121230 -9606 646627 LYPD8 UNQ511/PRO1026 - HGNC:44208|Ensembl:ENSG00000266949|Vega:OTTHUMG00000180686 1 1q44 LY6/PLAUR domain containing 8 protein-coding LYPD8 LY6/PLAUR domain containing 8 O ly6/PLAUR domain-containing protein 8|phospholipase inhibitor 20121230 -9606 646629 LOC646629 - - - 18 18q11.2 zinc finger protein 470 pseudogene pseudo - - - - 20121230 -9606 646630 CHCHD2P8 hCG_1790806 - HGNC:39592 13 13q12.2 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 8 pseudo CHCHD2P8 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 8 O - 20121230 -9606 646639 LOC646639 - - - 5 5p13.3 translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 646640 TTC39DP - - HGNC:35451 2 2p22.1 tetratricopeptide repeat domain 39D, pseudogene pseudo TTC39DP tetratricopeptide repeat domain 39D, pseudogene O - 20121230 -9606 646641 RPL7L1P7 - - HGNC:39489 3 3q23 ribosomal protein L7-like 1 pseudogene 7 pseudo RPL7L1P7 ribosomal protein L7-like 1 pseudogene 7 O - 20121230 -9606 646643 SBK2 - SGK069 HGNC:34416|Ensembl:ENSG00000187550|Vega:OTTHUMG00000155830 19 19q13.42 SH3-binding domain kinase family, member 2 protein-coding SBK2 SH3-binding domain kinase family, member 2 O Sugen kinase 69|serine/threonine-protein kinase SBK2 20121230 -9606 646644 LOC646644 - - - 2 2q36.1 LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene pseudo - - - - 20121230 -9606 646652 LOC646652 - - - 5 5p13.3 integral membrane glycoprotein-like unknown - - - - 20121230 -9606 646658 SYNDIG1L - CAPUCIN|DSPC1|IFITMD4|TMEM90A HGNC:32388|MIM:609999|Ensembl:ENSG00000183379|Vega:OTTHUMG00000171210 14 14q24.3 synapse differentiation inducing 1-like protein-coding SYNDIG1L synapse differentiation inducing 1-like O caudate- and putamen-enriched sequence|caudate-and putamen-enriched sequence|dispanin subfamily C member 1|interferon induced transmembrane protein domain containing 4|synapse differentiation-inducing gene protein 1-like|transmembrane protein 90A 20121230 -9606 646660 RPS20P26 - RPS20_11_1143 HGNC:36980 11 11p11.2 ribosomal protein S20 pseudogene 26 pseudo RPS20P26 ribosomal protein S20 pseudogene 26 O - 20121230 -9606 646663 LOC646663 - - - 19 19q13.42 ret finger protein-like 1 pseudogene pseudo - - - - 20121230 -9606 646665 LOC646665 - - - 15 15q24.1 golgin A6 family, member A pseudogene pseudo - - - - 20121230 -9606 646666 LOC646666 - - - 19 19p13.11 apolipoprotein A-I binding protein pseudogene pseudo - - - - 20121230 -9606 646670 LOC646670 - - - 15 15q24.1 uncharacterized LOC646670 protein-coding - - - - 20121209 -9606 646672 RPL15P20 - RPL15_7_1476 HGNC:36130 16 16p13.11 ribosomal protein L15 pseudogene 20 pseudo RPL15P20 ribosomal protein L15 pseudogene 20 O - 20121230 -9606 646674 LOC646674 - - - 2 2q21.1 single stranded DNA binding protein 4 pseudogene pseudo - - - - 20121230 -9606 646685 RPL23AP41 - RPL23A_18_409 HGNC:35634 3 3q23 ribosomal protein L23a pseudogene 41 pseudo RPL23AP41 ribosomal protein L23a pseudogene 41 O - 20121230 -9606 646688 RPL4P2 - RPL4_1_115 HGNC:36836 1 1q24.1 ribosomal protein L4 pseudogene 2 pseudo RPL4P2 ribosomal protein L4 pseudogene 2 O - 20121230 -9606 646693 CNN2P10 - - HGNC:39535 1 1q24.1 calponin 2 pseudogene 10 pseudo CNN2P10 calponin 2 pseudogene 10 O - 20121230 -9606 646696 LOC646696 - - - 2 2q36.1 MLX, MAX dimerization protein pseudogene pseudo - - - - 20121230 -9606 646698 ZSCAN5D - ZNF495D HGNC:37706 19 19q13.43 zinc finger and SCAN domain containing 5D protein-coding ZSCAN5D zinc finger and SCAN domain containing 5D O Putative zinc finger and SCAN domain-containing protein 5D|putative zinc finger and SCAN domain-containing protein 5D 20121230 -9606 646700 LOC646700 - - - 9 9p21.1 UPF0607 protein ENSP00000381418-like pseudogene pseudo - - - - 20121230 -9606 646701 LOC646701 - - - 14 14q24.3 developmental pluripotency associated 5 pseudogene pseudo - - - - 20121230 -9606 646702 HLA-DPA2 - HLA-DP2A HGNC:4939 6 6p21.32 major histocompatibility complex, class II, DP alpha 2 (pseudogene) pseudo HLA-DPA2 major histocompatibility complex, class II, DP alpha 2 (pseudogene) O - 20121230 -9606 646708 LOC646708 - - - 8 8p21.3-p21.2 DnaJ (Hsp40) homolog, subfamily C, member 5 pseudogene pseudo - - - - 20121230 -9606 646709 LOC646709 - - - 19 19q13.43 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 pseudogene pseudo - - - - 20121230 -9606 646710 RPL19P4 - RPL19_1_276 HGNC:36539 2 2q21.1 ribosomal protein L19 pseudogene 4 pseudo RPL19P4 ribosomal protein L19 pseudogene 4 O - 20121230 -9606 646719 LOC646719 - - - 5 5p13.2 uncharacterized LOC646719 miscRNA - - - - 20121230 -9606 646721 FAM60DP - - HGNC:19896 8 8p21.2 family with sequence similarity 60, member A pseudogene pseudo FAM60DP family with sequence similarity 60, member D pseudogene O - 20121230 -9606 646723 KRT18P31 - - HGNC:33400 5 5p13.2 keratin 18 pseudogene 31 pseudo KRT18P31 keratin 18 pseudogene 31 O - 20121230 -9606 646730 LOC646730 - - - 3 3q23 uncharacterized LOC646730 protein-coding - - - - 20121216 -9606 646736 LOC646736 - - - 2 2q36.3 uncharacterized LOC646736 miscRNA - - - - 20121230 -9606 646737 RPS14P6 - RPS14_3_529 HGNC:36241 4 4q31.3 ribosomal protein S14 pseudogene 6 pseudo RPS14P6 ribosomal protein S14 pseudogene 6 O - 20121230 -9606 646743 LOC646743 - - - 2 2q21.1 uncharacterized LOC646743 pseudo - - - - 20121230 -9606 646745 LOC646745 - - - 7 7p14.3 general transcription factor IIIC, polypeptide 6, alpha 35kDa pseudogene pseudo - - - - 20121230 -9606 646748 FLJ42022 - - - 15 15q24.1 uncharacterized LOC646748 unknown - - - - 20120622 -9606 646753 RPS26P2 - RPS26_19_971|bA98O11.1 HGNC:23662 9 9p21.1 ribosomal protein S26 pseudogene 2 pseudo RPS26P2 ribosomal protein S26 pseudogene 2 O - 20121230 -9606 646754 TRIM64C - - HGNC:37148|Ensembl:ENSG00000214891|Vega:OTTHUMG00000166752 11 11p11.12 tripartite motif containing 64C protein-coding TRIM64C tripartite motif containing 64C O putative tripartite motif-containing protein 64C|tripartite motif-containing 64C 20121230 -9606 646755 MFAP1P1 RP11-550P23.4 - HGNC:39694 13 13q12.3 microfibrillar-associated protein 1 pseudogene 1 pseudo MFAP1P1 microfibrillar-associated protein 1 pseudogene 1 O - 20121230 -9606 646758 PTPN2P2 RP11-550P23.5 - HGNC:9654 13 13q12.3 protein tyrosine phosphatase, non-receptor type 2 pseudogene 2 pseudo PTPN2P2 protein tyrosine phosphatase, non-receptor type 2 pseudogene 2 O - 20121230 -9606 646759 UBTFL7 hCG_1990491 - HGNC:35404 11 11p11.12 upstream binding transcription factor, RNA polymerase I-like 7 (pseudogene) pseudo UBTFL7 upstream binding transcription factor, RNA polymerase I-like 7 (pseudogene) O - 20121230 -9606 646762 LOC646762 - - - 7 7p14.3 uncharacterized LOC646762 miscRNA - - - - 20121230 -9606 646766 RPL35P2 - RPL35_1_683 HGNC:35789 6 6p21.31 ribosomal protein L35 pseudogene 2 pseudo RPL35P2 ribosomal protein L35 pseudogene 2 O - 20121230 -9606 646767 LOC646767 - - - 7 7p15.1 uncharacterized LOC646767 protein-coding - - - - 20120318 -9606 646770 LOC646770 - - - 11 11p11.12 tripartite motif containing 43 pseudogene pseudo - - - - 20121230 -9606 646778 LOC646778 - - - 18 18q12.1 uncharacterized LOC646778 unknown - - - - 20121230 -9606 646780 PHKA1P1 hCG_18635 - HGNC:33919 1 1p22.2 phosphorylase kinase, alpha 1 pseudogene 1 pseudo PHKA1P1 phosphorylase kinase, alpha 1 pseudogene 1 O - 20121230 -9606 646784 RPL5P6 - RPL5_2_71 HGNC:35890 1 1p22.2 ribosomal protein L5 pseudogene 6 pseudo RPL5P6 ribosomal protein L5 pseudogene 6 O - 20121230 -9606 646785 RPS10P13 - RPS10_8_685 HGNC:36374 6 6p21.31 ribosomal protein S10 pseudogene 13 pseudo RPS10P13 ribosomal protein S10 pseudogene 13 O - 20121230 -9606 646787 RPL31P37 - RPL31_18_839 HGNC:36197 7 7q31.32 ribosomal protein L31 pseudogene 37 pseudo RPL31P37 ribosomal protein L31 pseudogene 37 O - 20121230 -9606 646791 ANP32BP1 - - HGNC:24267 15 15q24.2 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 1 pseudo ANP32BP1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 1 O - 20121230 -9606 646794 LOC646794 - - - 2 2q36.3 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 646797 LOC646797 - - - 11 11p11.12 glutamyl aminopeptidase (aminopeptidase A) pseudogene pseudo - - - - 20121230 -9606 646799 ZAR1L RP11-37E23.4 ZAR2 HGNC:37116|Ensembl:ENSG00000189167|Vega:OTTHUMG00000016694 13 13q13.1 zygote arrest 1-like protein-coding ZAR1L zygote arrest 1-like O ZAR1-like protein 20121230 -9606 646801 LOC646801 - - - 11 11p11.12 pantothenate kinase 3 pseudogene pseudo - - - - 20121230 -9606 646802 CYP4F43P - - HGNC:39956 2 2q21.1 cytochrome P450, family 4, subfamily F, polypeptide 43, pseudogene pseudo CYP4F43P cytochrome P450, family 4, subfamily F, polypeptide 43, pseudogene O - 20121230 -9606 646804 LOC646804 - - - 1 1q24.3 alkylated DNA repair protein alkB homolog 8-like pseudo - - - - 20121230 -9606 646808 LOC646808 - - - 9 9p21.1 L antigen family, member 3 pseudogene pseudo - - - - 20121230 -9606 646813 LOC646813 - - - 11 11p11.12 DEAH (Asp-Glu-Ala-His) box polypeptide 9 pseudogene pseudo - - - - 20121230 -9606 646817 SETP18 - - HGNC:42937 1 1p22.1 SET pseudogene 18 pseudo SETP18 SET pseudogene 18 O - 20121230 -9606 646819 RPS15AP19 - RPS15A_5_686 HGNC:36603 6 6p21.31 ribosomal protein S15a pseudogene 19 pseudo RPS15AP19 ribosomal protein S15a pseudogene 19 O - 20121230 -9606 646820 RPL19P19 - RPL19_8_1674 HGNC:36194 19 19q13.43 ribosomal protein L19 pseudogene 19 pseudo RPL19P19 ribosomal protein L19 pseudogene 19 O - 20121230 -9606 646828 LOC646828 - - - 16 16p12.2 carbonic anhydrase VA, mitochondrial pseudogene pseudo - - - - 20121230 -9606 646836 LOC646836 - - - 2 2q21.1 uncharacterized LOC646836 protein-coding - - - Putative uncharacterized protein LOC646836 20120511 -9606 646837 EEF1GP1 - - HGNC:44556 7 7q31.33 eukaryotic translation elongation factor 1 gamma pseudogene 1 pseudo EEF1GP1 eukaryotic translation elongation factor 1 gamma pseudogene 1 O - 20121230 -9606 646839 TPM3P8 - - HGNC:39171 2 2q37.1 tropomyosin 3 pseudogene 8 pseudo TPM3P8 tropomyosin 3 pseudogene 8 O - 20121230 -9606 646849 LOC646849 - - - 3 3q24 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 646851 FAM227A RP1-199H16.1 - HGNC:44197|Ensembl:ENSG00000184949|Vega:OTTHUMG00000151133 22 22q13.1 family with sequence similarity 227, member A protein-coding FAM227A family with sequence similarity 227, member A O putative uncharacterized protein LOC388900 20121230 -9606 646853 LOC646853 - - - 15 15q24.3 non-histone chromosomal protein HMG-17 pseudogene pseudo - - - - 20121230 -9606 646862 LOC646862 - - - 19 19q13.43 uncharacterized LOC646862 protein-coding - - - uncharacterized protein LOC646862 20121230 -9606 646864 LOC646864 - - - 19 19p12 zinc finger protein 92 pseudogene pseudo - - - - 20121230 -9606 646865 LOC646865 hCG_1814936 - - 4 4q32.1 hCG1814936 protein-coding - - - - 20120511 -9606 646870 LOC646870 - - - 1 1q25.1 centrosomal protein 57kDa pseudogene pseudo - - - - 20121230 -9606 646873 LOC646873 - - - 7 7q31.33 slowmo homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 646875 RPL12P2 - RPL12_6_688|dJ441G21.1 HGNC:16070 6 6p21.2 ribosomal protein L12 pseudogene 2 pseudo RPL12P2 ribosomal protein L12 pseudogene 2 O - 20121230 -9606 646877 GAPDHP34 RP11-16L6.2 - HGNC:37786 13 13q13.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 34 pseudo GAPDHP34 glyceraldehyde 3 phosphate dehydrogenase pseudogene 34 O - 20121230 -9606 646879 ARL2BPP3 - - HGNC:39447 13 13q13.3 ADP-ribosylation factor-like 2 binding protein pseudogene 3 pseudo ARL2BPP3 ADP-ribosylation factor-like 2 binding protein pseudogene 3 O - 20121230 -9606 646884 RPL29P28 - RPL29_17_1307 HGNC:36842 13 13q13.1 ribosomal protein L29 pseudogene 28 pseudo RPL29P28 ribosomal protein L29 pseudogene 28 O - 20121230 -9606 646890 LOC646890 - - - 4 4q32.1 axin interactor, dorsalization associated pseudogene pseudo - - - - 20121230 -9606 646891 SDCCAG3P2 - - HGNC:39164 1 1q25.1 serologically defined colon cancer antigen 3 pseudogene 2 pseudo SDCCAG3P2 serologically defined colon cancer antigen 3 pseudogene 2 O - 20121230 -9606 646892 SH2D7 hCG_38941 - HGNC:34549|Ensembl:ENSG00000183476|Vega:OTTHUMG00000154271 15 15q25.1 SH2 domain containing 7 protein-coding SH2D7 SH2 domain containing 7 O Putative SH2 domain-containing protein LOC646892|SH2 domain-containing protein 7|hCG38941 20121230 -9606 646898 RPL12P40 - RPL12_19_1596 HGNC:36439 18 18q12.2 ribosomal protein L12 pseudogene 40 pseudo RPL12P40 ribosomal protein L12 pseudogene 40 O - 20121230 -9606 646903 LOC646903 - - - 3 3q25.1 uncharacterized LOC646903 miscRNA - - - - 20121230 -9606 646909 RPL17P33 - RPL17_19_888 HGNC:36654 8 8p12 ribosomal protein L17 pseudogene 33 pseudo RPL17P33 ribosomal protein L17 pseudogene 33 O - 20121230 -9606 646910 HSPD1P9 - HSPD1-14P HGNC:35132 13 13q13.3 heat shock 60kDa protein 1 (chaperonin) pseudogene 9 pseudo HSPD1P9 heat shock 60kDa protein 1 (chaperonin) pseudogene 9 O - 20121230 -9606 646912 RPL7P52 RP6-11O7.2 RPL7_21_1751 HGNC:35676 22 22q13.1 ribosomal protein L7 pseudogene 52 pseudo RPL7P52 ribosomal protein L7 pseudogene 52 O - 20121230 -9606 646913 SEPT7P3 tcag7.1317 - HGNC:38038 7 7p14.2 septin 7 pseudogene 3 pseudo SEPT7P3 septin 7 pseudogene 3 O - 20121230 -9606 646915 ZNF806 - - HGNC:33228 2 2q21.2 zinc finger protein 806 protein-coding ZNF806 zinc finger protein 806 O - 20121230 -9606 646927 LOC646927 C22:RP1-85F18.2 - - 22 22q13.2 uncharacterized LOC646927 pseudo - - - - 20121230 -9606 646929 ANKRD26P2 - - HGNC:39687 13 13q13.3 ankyrin repeat domain 26 pseudogene 2 pseudo ANKRD26P2 ankyrin repeat domain 26 pseudogene 2 O - 20121230 -9606 646934 LOC646934 - - - 15 15q25.1 golgin A6 family, member D pseudogene pseudo - - - - 20121230 -9606 646936 LOC646936 - - - 2 2p16.3 C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 646938 LOC646938 - - - 15 15q25.1 TBC1 domain family, member 2B pseudogene pseudo - - - - 20121230 -9606 646942 RPS10P14 - RPS10_9_805 HGNC:35880 7 7p14.1 ribosomal protein S10 pseudogene 14 pseudo RPS10P14 ribosomal protein S10 pseudogene 14 O - 20121230 -9606 646949 RPL23P6 - RPL23_1_689 HGNC:35554 6 6p21.2 ribosomal protein L23 pseudogene 6 pseudo RPL23P6 ribosomal protein L23 pseudogene 6 O - 20121230 -9606 646951 FAM188B2 - C3orf76|CLRN1 HGNC:35475 3 3q25.1 family with sequence similarity 188, member B2 protein-coding FAM188B2 family with sequence similarity 188, member B2 O Putative UPF0526 protein B 20121021 -9606 646954 YWHAQP4 - - HGNC:37683 4 4q32.3 YWHAQ pseudogene 4 pseudo YWHAQP4 YWHAQ pseudogene 4 O - 20121230 -9606 646956 LOC646956 - - - 15 15q25.1 heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudogene pseudo - - - - 20121230 -9606 646960 PRSS56 - MCOP6 HGNC:39433|MIM:613858 2 2q37.1 protease, serine, 56 protein-coding PRSS56 protease, serine, 56 O putative serine protease 56 20121230 -9606 646962 HRCT1 RP11-327L3.6 LGLL338|PRO537|UNQ338 HGNC:33872|Ensembl:ENSG00000196196|Vega:OTTHUMG00000154146 9 9p13.3 histidine rich carboxyl terminus 1 protein-coding HRCT1 histidine rich carboxyl terminus 1 O histidine-rich carboxyl terminus protein 1 20121230 -9606 646966 RPL26P16 - RPL26_3_532 HGNC:36098 4 4q32.3 ribosomal protein L26 pseudogene 16 pseudo RPL26P16 ribosomal protein L26 pseudogene 16 O - 20121230 -9606 646970 LOC646970 - - - 1 1p21.2 chromosome 5 open reading frame 15 pseudogene pseudo - - - - 20121230 -9606 646976 LOC646976 - - - 1 1q25.2 uncharacterized LOC646976 unknown - - - - 20120710 -9606 646981 PTPN2P1 hCG_2025063 PTPN2P|PTPTP1 HGNC:9653 1 1q25.2 protein tyrosine phosphatase, non-receptor type 2 pseudogene 1 pseudo PTPN2P1 protein tyrosine phosphatase, non-receptor type 2 pseudogene 1 O - 20121230 -9606 646982 LINC00598 - TTL HGNC:42770 13 13q14.11 long intergenic non-protein coding RNA 598 miscRNA LINC00598 long intergenic non-protein coding RNA 598 O - 20121230 -9606 646985 RPS12P25 - RPS12_14_1457 HGNC:36019 15 15q25.1 ribosomal protein S12 pseudogene 25 pseudo RPS12P25 ribosomal protein S12 pseudogene 25 O - 20121230 -9606 646993 HMGB3P24 - - HGNC:39316 9 9p13.2 high mobility group box 3 pseudogene 24 pseudo HMGB3P24 high mobility group box 3 pseudogene 24 O - 20121230 -9606 646995 LOC646995 - - - 4 4q32.3 tripartite motif-containing protein 38-like pseudo - - - - 20121230 -9606 646996 RAB42P1 hCG_2040201 RAB42|RAB42P HGNC:19799 14 14q32.11 RAB42, member RAS oncogene family, pseudogene 1 pseudo RAB42P1 RAB42, member RAS oncogene family, pseudogene 1 O - 20121230 -9606 646999 LOC646999 - - - 7 7p14.1 akirin 1 pseudogene pseudo - - - - 20121230 -9606 647000 TUBBP2 RP11-396A22.4 - HGNC:12415 13 13q14.11 tubulin, beta pseudogene 2 pseudo TUBBP2 tubulin, beta pseudogene 2 O - 20121230 -9606 647001 GAPDHP35 - - HGNC:37789 16 16p11.2 glyceraldehyde 3 phosphate dehydrogenase pseudogene 35 pseudo GAPDHP35 glyceraldehyde 3 phosphate dehydrogenase pseudogene 35 O - 20121230 -9606 647002 LOC647002 - - - 2 2q22.1 isopentenyl-diphosphate delta isomerase 1 pseudogene pseudo - - - - 20121230 -9606 647008 FLJ46120 - - - 3 3q25.31 uncharacterized LOC647008 other - - - - 20120622 -9606 647009 RWDD4P2 - FAM28CP HGNC:23754 7 7p14.1 RWD domain containing 4 pseudogene 2 pseudo RWDD4P2 RWD domain containing 4 pseudogene 2 O - 20121230 -9606 647012 LOC647012 - - - 2 2q22.1 YY1 transcription factor pseudogene pseudo - - - - 20121230 -9606 647013 LOC647013 - - - 9 9p13.2 potassium channel tetramerisation domain containing 9 pseudogene pseudo - - - - 20121230 -9606 647015 CDC37P2 - - HGNC:35453 16 16p11.2 cell division cycle 37 homolog (S. cerevisiae) pseudogene 2 pseudo CDC37P2 cell division cycle 37 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 647016 EIF2S2P7 - - HGNC:37795 2 2p16.1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 7 pseudo EIF2S2P7 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 7 O - 20121230 -9606 647020 LOC647020 - - - 15 15q25.1 uncharacterized LOC647020 protein-coding - - - - 20120511 -9606 647024 C6orf132 - bA7K24.2 HGNC:21288|Ensembl:ENSG00000188112|Vega:OTTHUMG00000014695 6 6p21.1 chromosome 6 open reading frame 132 protein-coding C6orf132 chromosome 6 open reading frame 132 O uncharacterized protein C6orf132 20121230 -9606 647030 LOC647030 hCG_19809 - - 7 7q32.3 eukaryotic translation elongation factor 1 beta 2 pseudogene pseudo - - - - 20121230 -9606 647033 PA2G4P4 - PA2G4L1 HGNC:32217 3 3q25.31 proliferation-associated 2G4 pseudogene 4 pseudo PA2G4P4 proliferation-associated 2G4 pseudogene 4 O - 20121230 -9606 647034 RPS14P10 tcag7.1149 RPS14_7_847 HGNC:35517 7 7q32.3 ribosomal protein S14 pseudogene 10 pseudo RPS14P10 ribosomal protein S14 pseudogene 10 O - 20121230 -9606 647042 GOLGA6L10 - - HGNC:37228|Ensembl:ENSG00000205281|Vega:OTTHUMG00000172603 15 15q25.2 golgin A6 family-like 10 protein-coding GOLGA6L10 golgin A6 family-like 10 O golgi autoantigen, golgin subfamily a, 6-like 10|putative golgin subfamily A member 6-like protein 10 20121230 -9606 647044 FAM220BP RP11-392E22.7 C9orf51|bA392E22.4 HGNC:23678 9 9p13.1 family with sequence similarity 220, member B, pseudogene unknown FAM220BP family with sequence similarity 220, member B, pseudogene O - 20121230 -9606 647047 TCP1P1 tcag7.1286 CCT1-3P|TCP1L1 HGNC:11659 7 7p14.1 t-complex 1 pseudogene 1 pseudo TCP1P1 t-complex 1 pseudogene 1 O - 20121230 -9606 647051 LOC647051 - - - 9 9p13.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide pseudogene pseudo - - - - 20121230 -9606 647060 SPATA31A1 RP11-347J14.5 C9orf36|C9orf36A|FAM75A1 HGNC:23394|Ensembl:ENSG00000204849|Vega:OTTHUMG00000013156 9 9p13.1 SPATA31 subfamily A, member 1 protein-coding SPATA31A1 SPATA31 subfamily A, member 1 O family with sequence similarity 75, member A1|protein FAM75A1 20121216 -9606 647069 LOC647069 - - - 9 9p13.1 FK506 binding protein 4, 59kDa pseudogene pseudo - - - - 20121209 -9606 647070 LOC647070 - - - 1 1q25.3 uncharacterized LOC647070 unknown - - - - 20120511 -9606 647076 BRD7P2 - - HGNC:33541 3 3q25.33 bromodomain containing 7 pseudogene 2 pseudo BRD7P2 bromodomain containing 7 pseudogene 2 O - 20121230 -9606 647077 LOC647077 - - - 2 2p15 ribosomal protein L14 pseudogene pseudo - - - - 20121230 -9606 647081 SDHDP2 - - HGNC:10685 7 7q32.1 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 2 pseudo SDHDP2 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 2 O - 20121230 -9606 647085 PPIAP25 - - HGNC:39270 13 13q14.13 peptidylprolyl isomerase A (cyclophilin A) pseudogene 25 pseudo PPIAP25 peptidylprolyl isomerase A (cyclophilin A) pseudogene 25 O - 20121230 -9606 647086 LOC647086 - - - 16 16p11.2 chromosome 20 open reading frame 27 pseudogene pseudo - - - - 20121230 -9606 647087 C7orf73 - PL-5283 HGNC:41909|Ensembl:ENSG00000243317|Vega:OTTHUMG00000155495 7 7q33 chromosome 7 open reading frame 73 protein-coding C7orf73 chromosome 7 open reading frame 73 O uncharacterized protein C7orf73 20121230 -9606 647088 CTF2P - NP HGNC:33173 16 16p11.2 cardiotrophin 2, pseudogene pseudo CTF2P cardiotrophin 2, pseudogene O - 20121230 -9606 647094 RPLP0P11 - RPLP0_4_1600 HGNC:36572 18 18q21.1 ribosomal protein, large, P0 pseudogene 11 pseudo RPLP0P11 ribosomal protein, large, P0 pseudogene 11 O - 20121230 -9606 647099 RPL23AP42 hCG_16001 RPL23A_13_431 HGNC:35942 3 3q26.1 ribosomal protein L23a pseudogene 42 pseudo RPL23AP42 ribosomal protein L23a pseudogene 42 O - 20121230 -9606 647102 ELK1P1 - - HGNC:39021 7 7p12.3 ELK1, member of ETS oncogene family pseudogene 1 pseudo ELK1P1 ELK1, member of ETS oncogene family pseudogene 1 O - 20121230 -9606 647107 CT64 - - HGNC:37197 3 3q26.1 cancer/testis antigen 64 (non-protein coding) miscRNA CT64 cancer/testis antigen 64 (non-protein coding) O - 20121230 -9606 647112 RPL27P6 - RPL27_2_233 HGNC:36330 2 2p15 ribosomal protein L27 pseudogene 6 pseudo RPL27P6 ribosomal protein L27 pseudogene 6 O - 20121230 -9606 647115 FLJ36848 - - - 2 2p15 uncharacterized LOC647115 unknown - - - - 20120511 -9606 647121 EMBP1 - - HGNC:38661 1 1p11.2 embigin pseudogene 1 pseudo EMBP1 embigin pseudogene 1 O - 20121230 -9606 647123 UQCRFS1P2 hCG_1641727 - HGNC:39172 7 7q34 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 2 pseudo UQCRFS1P2 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 2 O - 20121230 -9606 647132 LOC647132 - - - 1 1q31.1 DEAH (Asp-Glu-Ala-His) box polypeptide 29 pseudogene pseudo - - - - 20121230 -9606 647135 SRGAP2B RP3-365I19.1 SRGAP2L|SRGAP2P2 HGNC:35237|MIM:614703 1 1q21.1 SLIT-ROBO Rho GTPase activating protein 2B (pseudogene) protein-coding SRGAP2B SLIT-ROBO Rho GTPase activating protein 2B (pseudogene) O SLIT-ROBO Rho GTPase activating protein 2 pseudogene 2 20121230 -9606 647144 FAM108A9P - - HGNC:38509 16 16p11.2 family with sequence similarity 108, member A9, pseudogene pseudo FAM108A9P family with sequence similarity 108, member A9, pseudogene O - 20121230 -9606 647145 LOC647145 tcag7.940 - - 7 7p12.3 serine/arginine-rich splicing factor 8 pseudogene pseudo - - - - 20121230 -9606 647150 LOC647150 - - - 1 1q31.2 ATP-binding cassette, sub-family E (OABP), member 1 pseudogene pseudo - - - - 20121230 -9606 647155 RPS15AP20 - RPS15A_10_701 HGNC:36391 6 6p12.3 ribosomal protein S15a pseudogene 20 pseudo RPS15AP20 ribosomal protein S15a pseudogene 20 O - 20121230 -9606 647156 ACTR3BP3 - - HGNC:38678 16 16p11.2 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 3 pseudo ACTR3BP3 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 3 O - 20121230 -9606 647158 RPSAP33 - RPSA_10_433 HGNC:35556 3 3q26.2 ribosomal protein SA pseudogene 33 pseudo RPSAP33 ribosomal protein SA pseudogene 33 O - 20121230 -9606 647162 KRT18P33 - - HGNC:33402 2 2p14 keratin 18 pseudogene 33 pseudo KRT18P33 keratin 18 pseudogene 33 O - 20121230 -9606 647166 LINC00371 - - HGNC:42693 13 13q14.3 long intergenic non-protein coding RNA 371 unknown LINC00371 long intergenic non-protein coding RNA 371 O - 20121230 -9606 647167 EEF1A1P14 RP1-61P15.1 EEF1AL12 HGNC:3197 1 1q31.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 14 pseudo EEF1A1P14 eukaryotic translation elongation factor 1 alpha 1 pseudogene 14 O - 20121230 -9606 647169 LOC647169 - - - 6 6p12.2 glutathione S-transferase alpha 3 pseudogene pseudo - - - - 20121230 -9606 647174 SERPINE3 - - HGNC:24774|Ensembl:ENSG00000253309|Vega:OTTHUMG00000016943 13 13q14.3 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3 protein-coding SERPINE3 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3 O nexin-related serine protease inhibitor|serpin E3 20121230 -9606 647175 LOC647175 - - - 6 6p12.2 glutathione S-transferase alpha 3 pseudogene pseudo - - - - 20121230 -9606 647177 LOC647177 - - - 6 6p12.2 glutathione S-transferase alpha 3 pseudogene pseudo - - - - 20121230 -9606 647187 IGHV3OR16-6 - IGHV3OR166 HGNC:5641|IMGT/GENE-DB:IGHV3/OR16-6 16 16p11.2 immunoglobulin heavy variable 3/OR16-6 (pseudogene) pseudo IGHV3OR16-6 immunoglobulin heavy variable 3/OR16-6 (pseudogene) O - 20121230 -9606 647190 RPS16P5 - RPS16_3_702 HGNC:36183 6 6p12.1 ribosomal protein S16 pseudogene 5 pseudo RPS16P5 ribosomal protein S16 pseudogene 5 O - 20121230 -9606 647195 LOC647195 - - - 1 1q31.3 proline rich 13 pseudogene pseudo - - - - 20121230 -9606 647201 RPL23AP16 - RPL23A_4_145 HGNC:36652 1 1q32.1 ribosomal protein L23a pseudogene 16 pseudo RPL23AP16 ribosomal protein L23a pseudogene 16 O - 20121230 -9606 647208 LOC647208 - - - 16 16p11.2 protein phosphatase 2, regulatory subunit B'', beta pseudogene pseudo - - - - 20121230 -9606 647211 LOC647211 - - - 16 16p11.2 rhophilin-2-like pseudo - - - - 20121209 -9606 647215 MROH3P - C1orf81 HGNC:33122 1 1q32.1 maestro heat-like repeat family member 3, pseudogene unknown MROH3P maestro heat-like repeat family member 3, pseudogene O - 20121230 -9606 647219 ASCL5 - bHLHa47 HGNC:33169 1 1q32.1 achaete-scute complex homolog 5 (Drosophila) protein-coding ASCL5 achaete-scute complex homolog 5 (Drosophila) O ASH-5|achaete-scute homolog 5|class A basic helix-loop-helix protein 47|hASH5 20121230 -9606 647236 RPL39P15 - RPL39_5_239 HGNC:35856 2 2p13.3 ribosomal protein L39 pseudogene 15 pseudo RPL39P15 ribosomal protein L39 pseudogene 15 O - 20121230 -9606 647249 GAPDHP36 - - HGNC:37790 3 3q26.33 glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 pseudo GAPDHP36 glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 O - 20121230 -9606 647253 LOC647253 - - - 3 3q26.33 ring finger protein 13 pseudogene pseudo - - - - 20121230 -9606 647264 LOC647264 - - - 13 13q21.31 uncharacterized LOC647264 unknown - - - - 20121230 -9606 647265 CYP2AB1P - - HGNC:39975 3 3q27.1 cytochrome P450, family 2, subfamily AB, polypeptide 1, pseudogene pseudo CYP2AB1P cytochrome P450, family 2, subfamily AB, polypeptide 1, pseudogene O - 20121230 -9606 647275 LOC647275 - - - 2 2p12 purine nucleoside phosphorylase pseudogene pseudo - - - - 20121230 -9606 647276 RPL4P4 - RPL4_2_444 HGNC:36179 3 3q27.2 ribosomal protein L4 pseudogene 4 pseudo RPL4P4 ribosomal protein L4 pseudogene 4 O - 20121230 -9606 647285 RPL29P9 - RPL29_4_447 HGNC:35729 3 3q27.3 ribosomal protein L29 pseudogene 9 pseudo RPL29P9 ribosomal protein L29 pseudogene 9 O - 20121230 -9606 647286 RD3L - TDRD9-AS1|TDRD9AS1 HGNC:40912|Ensembl:ENSG00000227729|Vega:OTTHUMG00000152877 14 14q32.33 retinal degeneration 3-like protein-coding RD3L retinal degeneration 3-like O TDRD9 antisense 1|TDRD9 antisense RNA 1 (non-protein coding)|protein RD3-like|retinal degeneration protein 3-like 20121230 -9606 647288 CTAGE11P RP11-159J2.1 - HGNC:37293 13 13q22.2 CTAGE family, member 11, pseudogene pseudo CTAGE11P CTAGE family, member 11, pseudogene O - 20121230 -9606 647298 HSPD1P8 RP11-600P1.1 HSPD1-12P HGNC:35145 13 13q31.1 heat shock 60kDa protein 1 (chaperonin) pseudogene 8 pseudo HSPD1P8 heat shock 60kDa protein 1 (chaperonin) pseudogene 8 O - 20121230 -9606 647299 LOC647299 - - - 3 3q28 enolase-phosphatase 1 pseudogene pseudo - - - - 20121230 -9606 647302 LSM3P3 - - HGNC:44348 2 2p11.2 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 3 pseudo LSM3P3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 3 O - 20121230 -9606 647307 PEBP1P2 - - HGNC:44344 2 2p11.2 phosphatidylethanolamine binding protein 1 pseudogene 2 pseudo PEBP1P2 phosphatidylethanolamine binding protein 1 pseudogene 2 O - 20121230 -9606 647309 GMNC - GEMC1 HGNC:40049|MIM:614448|Ensembl:ENSG00000205835|Vega:OTTHUMG00000156195 3 3q28 geminin coiled-coil domain containing protein-coding GMNC geminin coiled-coil domain containing O geminin coiled-coil domain-containing protein 1 20121230 -9606 647310 TEX22 - - HGNC:40026|Ensembl:ENSG00000226174|Vega:OTTHUMG00000156137 14 14q32.33 testis expressed 22 protein-coding TEX22 testis expressed 22 O testis expressed gene 22|testis-expressed sequence 22 protein 20121230 -9606 647317 GYG1P2 - - HGNC:39710 13 13q31.1 glycogenin 1 pseudogene 2 pseudo GYG1P2 glycogenin 1 pseudogene 2 O - 20121230 -9606 647319 VEZF1P1 - VEZF1L1|ZNF161L1 HGNC:32320 3 3q29 vascular endothelial zinc finger 1 pseudogene 1 pseudo VEZF1P1 vascular endothelial zinc finger 1 pseudogene 1 O - 20121230 -9606 647323 LOC647323 - - - 3 3q29 uncharacterized LOC647323 miscRNA - - - - 20121230 -9606 647349 LOC647349 - - - 16 - AP-3 complex subunit sigma-1-like pseudo - - - - 20121102 -9606 647415 ALG1L5P - - HGNC:44374 7 7p22.1 asparagine-linked glycosylation 1-like 5, pseudogene pseudo ALG1L5P asparagine-linked glycosylation 1-like 5, pseudogene O - 20121230 -9606 647436 RPL5P1 - RPL5_12_1419 HGNC:10361 15 15q11.2 ribosomal protein L5 pseudogene 1 pseudo RPL5P1 ribosomal protein L5 pseudogene 1 O - 20121230 -9606 647476 FLJ20518 - - - 9 - FSHD region gene 2 family, member C pseudogene pseudo - - - - 20121102 -9606 647481 LOC647481 hCG_1979841 - - 1 1q21.1 family with sequence similarity 91, member A1 pseudogene pseudo - - - - 20121230 -9606 647503 LOC647503 - - - 12 12q24.33 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 647507 CNN2P4 - - HGNC:39529 9 9p11.2 calponin 2 pseudogene 4 pseudo CNN2P4 calponin 2 pseudogene 4 O - 20121230 -9606 647532 LOC647532 - - - 10 10q23.1 phenylalanine-tRNA synthetase-like, beta subunit pseudogene pseudo - - - - 20121230 -9606 647569 PFN1P12 - - HGNC:42995 1 1q21.2 profilin 1 pseudogene 12 pseudo PFN1P12 profilin 1 pseudogene 12 O - 20121230 -9606 647589 ANHX hCG_2007354 - HGNC:40024|Ensembl:ENSG00000227059|Vega:OTTHUMG00000167949 12 12q24.33 anomalous homeobox protein-coding ANHX anomalous homeobox O anomalous homeobox protein|hCG2007354 20121230 -9606 647633 LOC647633 - - - 2 2q11.1 uncharacterized LOC647633 pseudo - - - - 20121209 -9606 647654 LOC647654 - - - 2 - cell division cycle protein 27 homolog pseudo - - - - 20121102 -9606 647662 FLJ40039 - - - 12 - uncharacterized LOC647662 unknown - - - - 20120622 -9606 647696 CDC27P1 - - HGNC:38091 2 2q21.2 cell division cycle 27 homolog (S. cerevisiae) pseudogene 1 pseudo CDC27P1 cell division cycle 27 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 647859 LOC647859 - - - 5 5q13.2 occludin pseudogene pseudo - - - - 20121209 -9606 647946 LINC00669 - - HGNC:44332 18 18q12.2-q12.3 long intergenic non-protein coding RNA 669 miscRNA LINC00669 long intergenic non-protein coding RNA 669 O - 20121230 -9606 647979 LINC00657 - - HGNC:44311 20 20q11.23 long intergenic non-protein coding RNA 657 miscRNA LINC00657 long intergenic non-protein coding RNA 657 O - 20121230 -9606 647983 LOC647983 - - - 18 18p11.21 uncharacterized LOC647983 unknown - - - - 20120511 -9606 647996 LOC647996 - - - 2 2q21.2 chromosome 9 open reading frame 172 pseudogene pseudo - - - - 20121230 -9606 648000 RPL7P23 hCG_2015956 RPL7_7_580 HGNC:35658 5 5q13.3 ribosomal protein L7 pseudogene 23 pseudo RPL7P23 ribosomal protein L7 pseudogene 23 O - 20121230 -9606 648044 LOC648044 - - - 19 19p13.2 guanine nucleotide binding protein (G protein), gamma 12-like protein-coding - - - guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12-like 20121230 -9606 648149 LOC648149 - - - 2 2q34 uncharacterized LOC648149 unknown - - - - 20120508 -9606 648217 RPL37P23 - RPL37_8_1665 HGNC:37003 19 19q13.41 ribosomal protein L37 pseudogene 23 pseudo RPL37P23 ribosomal protein L37 pseudogene 23 O - 20121230 -9606 648262 LOC648262 - - - 1 1q42.13 capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 648283 TERF1P4 - - HGNC:38500 X Xq21.1 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 4 pseudo TERF1P4 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 4 O - 20121230 -9606 648294 RPL23AP57 - RPL23A_24_958 HGNC:36971 9 9p24.1 ribosomal protein L23a pseudogene 57 pseudo RPL23AP57 ribosomal protein L23a pseudogene 57 O - 20121230 -9606 648315 VN2R9P - - HGNC:33215 11 11q12.1 vomeronasal 2 receptor 9 pseudogene pseudo VN2R9P vomeronasal 2 receptor 9 pseudogene O - 20121230 -9606 648343 RPS29P9 - RPS29_6_317 HGNC:36913 2 2q33.3 ribosomal protein S29 pseudogene 9 pseudo RPS29P9 ribosomal protein S29 pseudogene 9 O - 20121230 -9606 648359 FAM108A4P - FAM108A4 HGNC:34041 1 1q41 family with sequence similarity 108, member A4, pseudogene pseudo FAM108A4P family with sequence similarity 108, member A4, pseudogene O - 20121230 -9606 648442 LOC648442 - - - 7 7q31.31 eukaryotic translation initiation factor 3, subunit I pseudogene pseudo - - - - 20121230 -9606 648532 NRBF2P1 - - HGNC:44604 18 18q12.2 nuclear receptor binding factor 2 pseudogene 1 pseudo NRBF2P1 nuclear receptor binding factor 2 pseudogene 1 O - 20121230 -9606 648570 LOC648570 - - - 9 9p22.2 uncharacterized LOC648570 unknown - - - - 20121230 -9606 648630 TSSK5P1 - TSSKps1 HGNC:31931 8 8q24.3 testis-specific serine kinase 5 pseudogene 1 pseudo TSSK5P1 testis-specific serine kinase 5 pseudogene 1 O - 20121230 -9606 648691 LOC648691 - - - 22 - uncharacterized LOC648691 miscRNA - - - - 20121230 -9606 648726 LOC648726 - - - 12 - calponin-2-like pseudo - - - - 20121102 -9606 648729 RPS15AP24 - RPS15A_13_889 HGNC:36174 8 8p12 ribosomal protein S15a pseudogene 24 pseudo RPS15AP24 ribosomal protein S15a pseudogene 24 O - 20121230 -9606 648740 ACTG1P4 - ACTGP4 HGNC:149 1 1p21.1 actin, gamma 1 pseudogene 4 pseudo ACTG1P4 actin, gamma 1 pseudogene 4 O - 20121230 -9606 648761 LOC648761 - - - 9 9p11.2 uncharacterized LOC648761 protein-coding - - - - 20121222 -9606 648771 LOC648771 - - - 22 - 60S ribosomal protein L12-like pseudo - - - - 20121102 -9606 648774 LOC648774 - - - 16 16q23.3 polo-like kinase 1 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 648791 PPP1R3G RP1-67E13.1 - HGNC:14945|Ensembl:ENSG00000219607|Vega:OTTHUMG00000014172 6 6p25.1 protein phosphatase 1, regulatory subunit 3G protein-coding PPP1R3G protein phosphatase 1, regulatory subunit 3G O protein phosphatase 1 regulatory subunit 3G|protein phosphatase 1, regulatory (inhibitor) subunit 3G|putative protein phosphatase 1 regulatory inhibitor subunit 3G 20121230 -9606 648809 EFTUD1P1 - FAM42B|HsT19321 HGNC:31739 15 15q25.2 elongation factor Tu GTP binding domain containing 1 pseudogene 1 pseudo EFTUD1P1 elongation factor Tu GTP binding domain containing 1 pseudogene 1 O - 20121230 -9606 648822 HMGN2P18 - - HGNC:39382 1 1q22 high mobility group nucleosomal binding domain 2 pseudogene 18 pseudo HMGN2P18 high mobility group nucleosomal binding domain 2 pseudogene 18 O - 20121230 -9606 648927 LOC648927 - - - X Xq21.33 K(lysine) acetyltransferase 7 pseudogene pseudo - - - - 20121230 -9606 648934 LOC648934 - - - 6 6q14.1 citrate synthase, mitochondrial-like pseudo - - - - 20121230 -9606 648947 AKR1C7P - - HGNC:44681 10 10p15.1 aldo-keto reductase family 1, member C7, pseudogene pseudo AKR1C7P aldo-keto reductase family 1, member C7, pseudogene O - 20121230 -9606 648980 BCRP5 - BCRL5 HGNC:1018 22 22q11.21 breakpoint cluster region pseudogene 5 pseudo BCRP5 breakpoint cluster region pseudogene 5 O - 20121230 -9606 648987 LOC648987 - - - 5 5p12 uncharacterized LOC648987 miscRNA - - - - 20121230 -9606 648999 LOC648999 - - - X - uncharacterized LOC648999 unknown - - - - 20120318 -9606 649024 LOC649024 - - - 3 3q13.12 citrate synthase pseudogene pseudo - - - - 20121230 -9606 649133 LOC649133 - - - 11 11q23.3 uncharacterized LOC649133 miscRNA - - - - 20121230 -9606 649137 ZSCAN5C - ZNF495C HGNC:34294 19 19q13.43 zinc finger and SCAN domain containing 5C pseudo ZSCAN5C zinc finger and SCAN domain containing 5C O - 20121230 -9606 649159 LINC00273 - NCRNA00273|TOP HGNC:38595 16 16p11.2 long intergenic non-protein coding RNA 273 miscRNA LINC00273 long intergenic non-protein coding RNA 273 O - 20121230 -9606 649166 LOC649166 - - - 9 9q21.33 eukaryotic translation initiation factor 3, subunit J pseudogene pseudo - - - - 20121230 -9606 649179 PRAMEL - - HGNC:34302 22 22q11.22 preferentially expressed antigen in melanoma-like unknown PRAMEL preferentially expressed antigen in melanoma-like O - 20121230 -9606 649186 VN2R17P - - HGNC:33223 19 19q13.43 vomeronasal 2 receptor 17 pseudogene pseudo VN2R17P vomeronasal 2 receptor 17 pseudogene O - 20121230 -9606 649201 LOC649201 - - - X Xq28 paraneoplastic antigen like 6A-like protein-coding - - - - 20121216 -9606 649238 LOC649238 - - - X Xq28 putative paraneoplastic antigen-like protein 6B-like protein-coding - - - - 20121230 -9606 649264 CES5AP1 - - HGNC:38516 22 22q11.23 carboxylesterase 5A pseudogene 1 pseudo CES5AP1 carboxylesterase 5A pseudogene 1 O - 20121230 -9606 649288 AK4P6 - - HGNC:39069 4 4q31.3 adenylate kinase 4 pseudogene 6 pseudo AK4P6 adenylate kinase 4 pseudogene 6 O - 20121230 -9606 649294 LOC649294 - - - 8 8p23.1 uncharacterized LOC649294 unknown - - - - 20120508 -9606 649299 RPL36AP51 - RPL36A_25_1638 HGNC:36632 19 19p12 ribosomal protein L36a pseudogene 51 pseudo RPL36AP51 ribosomal protein L36a pseudogene 51 O - 20121230 -9606 649305 LOC649305 - - - 8 - uncharacterized LOC649305 unknown - - - - 20120710 -9606 649324 LOC649324 - - - 1 1p36.21 PRAME family member 1-like pseudo - - - - 20121230 -9606 649330 LOC649330 - - - 1 - heterogeneous nuclear ribonucleoprotein C-like protein-coding - - - - 20121230 -9606 649352 LOC649352 - - - 8 8p23.1 ubiquitin carboxyl-terminal hydrolase 17-like protein 2-like pseudo - - - - 20121230 -9606 649395 LOC649395 - - - 7 7q11.21 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene pseudo - - - - 20121230 -9606 649408 LOC649408 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 649425 LOC649425 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 649446 DLGAP1-AS1 - HsT914 HGNC:31676 18 18p11.31 DLGAP1 antisense RNA 1 miscRNA DLGAP1-AS1 DLGAP1 antisense RNA 1 O - 20121230 -9606 649458 MPTX - - - 1 1q23.2 amyloid P component, serum pseudogene pseudo - - - - 20121230 -9606 649489 PPP1R2P5 - - HGNC:16320 2 2q12.3 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 5 pseudo PPP1R2P5 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 5 O - 20121230 -9606 649620 LOC649620 - - - Un - cell division cycle protein 27 homolog pseudo - - - - 20121102 -9606 649671 LOC649671 - - - 1 1q23.3 probable ATP-dependent RNA helicase DDX56-like pseudo - - - - 20121209 -9606 649783 LOC649783 - - - 6 6p21.3 HLA class II histocompatibility antigen-like protein-coding - - - - 20120710 -9606 649873 LOC649873 - - - 17 17p12 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 649925 SETP16 - - HGNC:42935 11 11q23.3 SET pseudogene 16 pseudo SETP16 SET pseudogene 16 O - 20121230 -9606 649935 LOC649935 - - - 2 2p14 UPF0607 protein ENSP00000381514-like protein-coding - - - Putative UPF0607 protein ENSP00000381514 20120511 -9606 649946 RPL23AP64 - RPL23A_25_1182 HGNC:36552 11 11q23.3 ribosomal protein L23a pseudogene 64 pseudo RPL23AP64 ribosomal protein L23a pseudogene 64 O - 20121230 -9606 649993 LOC649993 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 650024 LOC650024 - - - X Xq26.3 chromosome X open reading frame 48 pseudogene pseudo - - - - 20121230 -9606 650059 RPL21P82 - RPL21_34_997 HGNC:36307 9 9q22.31 ribosomal protein L21 pseudogene 82 pseudo RPL21P82 ribosomal protein L21 pseudogene 82 O - 20121230 -9606 650157 LOC650157 - - - 2 2p25.1 peptidyl-prolyl cis-trans isomerase A-like protein-coding - - - - 20121209 -9606 650172 CCT4P1 - CCT4-2P HGNC:35151 7 7q34 chaperonin containing TCP1, subunit 4 (delta) pseudogene 1 pseudo CCT4P1 chaperonin containing TCP1, subunit 4 (delta) pseudogene 1 O - 20121230 -9606 650181 LOC650181 - - - X Xq11.2 AhpC/TSA antioxidant enzyme domain containing 1 pseudogene pseudo - - - - 20121230 -9606 650226 LOC650226 - - - 7 7p11.2 ankyrin repeat domain 26 pseudogene pseudo - - - - 20121230 -9606 650236 LOC650236 - - - 1 1p36.21 PRAME family member 2 pseudogene pseudo - - - - 20121230 -9606 650267 LOC650267 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121222 -9606 650293 LOC650293 - - - 4 4p16.1 seven transmembrane helix receptor protein-coding - - - - 20121230 -9606 650368 LOC650368 - - - 11 11p15.4 asparagine-linked glycosylation 1-like pseudogene pseudo - - - - 20121230 -9606 650474 TPSP2 - - HGNC:14136 16 16p13.3 tryptase pseudogene 2 pseudo TPSP2 tryptase pseudogene 2 O - 20121230 -9606 650560 DDX3YP3 - - HGNC:42173 4 4q24 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 3 pseudo DDX3YP3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 3 O - 20121230 -9606 650623 LOC650623 - - - 10 10q22.3 BEN domain containing 3 pseudogene pseudo - - - - 20121230 -9606 650655 ABCA17P - ABCA17 HGNC:32972 16 16p13.3 ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene pseudo ABCA17P ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene O - 20121230 -9606 650669 GAS6-AS1 - - HGNC:39826 13 13q34 GAS6 antisense RNA 1 miscRNA GAS6-AS1 GAS6 antisense RNA 1 O - 20121230 -9606 650724 LOC650724 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 650747 IMPA1P - - HGNC:33956 8 8q21.13 inositol(myo)-1(or 4)-monophosphatase 1 pseudogene pseudo IMPA1P inositol(myo)-1(or 4)-monophosphatase 1 pseudogene O - 20121230 -9606 650788 RPS28P9 - RPS28_5_1524 HGNC:36193 17 17p11.1 ribosomal protein S28 pseudogene 9 pseudo RPS28P9 ribosomal protein S28 pseudogene 9 O - 20121230 -9606 650794 MIPEPP3 - LINC00539 HGNC:39458 13 13q12.11 mitochondrial intermediate peptidase pseudogene 3 pseudo MIPEPP3 mitochondrial intermediate peptidase pseudogene 3 O - 20121230 -9606 650808 RPL4P1 - RPL4_2_1340 HGNC:23551 14 14q11.2 ribosomal protein L4 pseudogene 1 pseudo RPL4P1 ribosomal protein L4 pseudogene 1 O - 20121230 -9606 650866 LOC650866 - - - 5 5q32 transient receptor potential cation channel, subfamily C, member 6 pseudogene pseudo - - - - 20121230 -9606 650901 RPS2P12 - RPS2_2_35 HGNC:36546 1 1p34.2 ribosomal protein S2 pseudogene 12 pseudo RPS2P12 ribosomal protein S2 pseudogene 12 O - 20121230 -9606 650983 RCC2P1 - - HGNC:37710 Y Yq11.21 regulator of chromosome condensation 2 pseudogene 1 pseudo RCC2P1 regulator of chromosome condensation 2 pseudogene 1 O - 20121209 -9606 651053 DDX18P2 - - HGNC:21432 15 15q22.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 2 pseudo DDX18P2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 2 O - 20121230 -9606 651144 LOC651144 - - - 10 10q26.12 nascent polypeptide-associated complex alpha subunit pseudogene pseudo - - - - 20121230 -9606 651249 RPL34P27 - RPL34_11_1303 HGNC:36369 13 13q12.12 ribosomal protein L34 pseudogene 27 pseudo RPL34P27 ribosomal protein L34 pseudogene 27 O - 20121230 -9606 651250 LRRC37A16P - - HGNC:43820 17 17q24.2 leucine rich repeat containing 37, member A16, pseudogene pseudo LRRC37A16P leucine rich repeat containing 37, member A16, pseudogene O - 20121230 -9606 651258 GAPDHP37 CTA-229A8.2 - HGNC:37791 22 22q13.2 glyceraldehyde 3 phosphate dehydrogenase pseudogene 37 pseudo GAPDHP37 glyceraldehyde 3 phosphate dehydrogenase pseudogene 37 O - 20121230 -9606 651302 ZNF192P1 - ZNF389|ZNF389P|dJ265C24.4 HGNC:18777 6 6p22.1 zinc finger protein 192 pseudogene 1 pseudo ZNF192P1 zinc finger protein 192 pseudogene 1 O - 20121230 -9606 651337 LOC651337 - - - 9 9q34.3 uncharacterized LOC651337 unknown - - - - 20121230 -9606 651430 FLJ38576 - - - 4 4q35.2 uncharacterized LOC651430 miscRNA - - - - 20121230 -9606 651446 LOC651446 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 651452 POM121L3P - POM121L3|dJ831C21.3 HGNC:16440 20 20p11.21 POM121 transmembrane nucleoporin-like 3, pseudogene pseudo POM121L3P POM121 transmembrane nucleoporin-like 3, pseudogene O - 20121230 -9606 651536 LOC651536 - - - Un - immunoglobulin iota chain-like protein-coding - - - - 20121102 -9606 651600 RPL36P16 - RPL36_7_1657 HGNC:37010 19 19q13.2 ribosomal protein L36 pseudogene 16 pseudo RPL36P16 ribosomal protein L36 pseudogene 16 O - 20121230 -9606 651628 EEF1GP3 - - HGNC:44558 3 3p22.1 eukaryotic translation elongation factor 1 gamma pseudogene 3 pseudo EEF1GP3 eukaryotic translation elongation factor 1 gamma pseudogene 3 O - 20121230 -9606 651644 LOC651644 - - - 4 4p14 LIM and senescent cell antigen-like domains 2 pseudogene pseudo - - - - 20121230 -9606 651714 LOC651714 - - - 3 3q29 mucin 20, cell surface associated pseudogene pseudo - - - - 20121230 -9606 651746 ANKRD33B - - HGNC:35240|Ensembl:ENSG00000164236|Vega:OTTHUMG00000162050 5 5p15.2 ankyrin repeat domain 33B protein-coding ANKRD33B ankyrin repeat domain 33B O Ankyrin repeat domain-containing protein LOC651746|ankyrin repeat domain-containing protein 33B 20121230 -9606 651815 KLF3P1 - - HGNC:41518 5 5q35.1 Kruppel-like factor 3 (basic) pseudogene 1 pseudo KLF3P1 Kruppel-like factor 3 (basic) pseudogene 1 O - 20121230 -9606 651856 LOC651856 - - - 3 3q21.2 uncharacterized LOC651856 pseudo - - - - 20121209 -9606 651959 LOC651959 - - - Un - FSHD region gene 2-like protein-coding - - - - 20121230 -9606 652070 SCFV - - - 14 - single-chain Fv fragment other - - - - 20120710 -9606 652119 LOC652119 - - - Un - double homeobox protein 4-like protein 4-like protein-coding - - - - 20121102 -9606 652170 COX4I1P2 RP11-154C3.1 - HGNC:38036 13 13q14.13 cytochrome c oxidase subunit IV isoform 1 pseudogene 2 pseudo COX4I1P2 cytochrome c oxidase subunit IV isoform 1 pseudogene 2 O - 20121230 -9606 652231 LOC652231 - - - 2 - L1 protein protein-coding - - - - 20120710 -9606 652276 LOC652276 PRO0461 - - 16 16p13.3 potassium channel tetramerisation domain containing 5 pseudogene pseudo - - - - 20121230 -9606 652301 LOC652301 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 652316 LOC652316 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 652411 RPSAP44 - RPSA_16_706 HGNC:36891 6 6p12.1 ribosomal protein SA pseudogene 44 pseudo RPSAP44 ribosomal protein SA pseudogene 44 O - 20121230 -9606 652423 LOC652423 - - - 6 6p12.1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 652489 SUMO2P3 - - HGNC:39013 7 7p11.2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 3 pseudo SUMO2P3 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 3 O - 20121230 -9606 652549 LOC652549 - - - 1 1p31.1 SNW domain containing 1 pseudogene pseudo - - - - 20121230 -9606 652586 LOC652586 - - - Un - double homeobox protein 4-like protein 4-like protein-coding - - - - 20121102 -9606 652608 LOC652608 - - - Un - 60S ribosomal protein L6-like pseudo - - - - 20121102 -9606 652624 RPSAP46 - RPSA_14_827 HGNC:36082 7 7q22.1 ribosomal protein SA pseudogene 46 pseudo RPSAP46 ribosomal protein SA pseudogene 46 O - 20121230 -9606 652670 RPS3AP15 - RPS3A_2_382 HGNC:35781 3 3p12.3 ribosomal protein S3a pseudogene 15 pseudo RPS3AP15 ribosomal protein S3a pseudogene 15 O - 20121230 -9606 652706 LOC652706 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 652749 LOC652749 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 652764 HPX-2 - - - - - homeobox HPX-2 protein-coding - - - - 20120710 -9606 652873 IGKV2OR2-7 - IGKV2/OR2-7|IGKV2OR27 HGNC:5810|IMGT/GENE-DB:IGKV2/OR2-7 2 2q11.2 immunoglobulin kappa variable 2/OR2-7 (pseudogene) pseudo IGKV2OR2-7 immunoglobulin kappa variable 2/OR2-7 (pseudogene) O - 20121209 -9606 652904 CKS1BP6 - - HGNC:24608 X Xp21.2 CDC28 protein kinase regulatory subunit 1B pseudogene 6 pseudo CKS1BP6 CDC28 protein kinase regulatory subunit 1B pseudogene 6 O - 20121230 -9606 652959 BTF3P5 - - HGNC:38565 2 2p16.1 basic transcription factor 3 pseudogene 5 pseudo BTF3P5 basic transcription factor 3 pseudogene 5 O - 20121230 -9606 652960 BTF3P7 RP11-320C15.1 - HGNC:38569 6 6p25.1 basic transcription factor 3 pseudogene 7 pseudo BTF3P7 basic transcription factor 3 pseudogene 7 O - 20121230 -9606 652961 BTF3P8 RP11-151A2.2 - HGNC:38572 X Xq11.1 basic transcription factor 3 pseudogene 8 pseudo BTF3P8 basic transcription factor 3 pseudogene 8 O - 20121230 -9606 652963 BTF3P12 - BTF3L2|HUMBTFC HGNC:1127|MIM:603738 8 8q13.3 basic transcription factor 3 pseudogene 12 pseudo BTF3P12 basic transcription factor 3 pseudogene 12 O - 20121230 -9606 652964 BTF3P3 - - HGNC:31100 8 8p21.3 basic transcription factor 3, pseudogene 3 pseudo BTF3P3 basic transcription factor 3, pseudogene 3 O - 20121230 -9606 652965 SNORA48 - ACA48 HGNC:32641 17 17p13.1 small nucleolar RNA, H/ACA box 48 snoRNA SNORA48 small nucleolar RNA, H/ACA box 48 O - 20121230 -9606 652966 SNORD10 - mgU6-77 HGNC:32706 17 17p13.1 small nucleolar RNA, C/D box 10 snoRNA SNORD10 small nucleolar RNA, C/D box 10 O - 20121230 -9606 652968 GATSL3 - - HGNC:34423|Ensembl:ENSG00000239282|Vega:OTTHUMG00000150929 22 22q12 GATS protein-like 3 protein-coding GATSL3 GATS protein-like 3 O GATS-like protein 3 20121230 -9606 652969 SLC6A21P - SLC6A21 HGNC:31400 19 19q13.33 solute carrier family 6 (neurotransmitter transporter), member 21, pseudogene pseudo SLC6A21P solute carrier family 6 (neurotransmitter transporter), member 21, pseudogene O - 20121230 -9606 652972 LRRC37A5P RP11-16L21.8 C9orf29 HGNC:23369 9 9q31.3 leucine rich repeat containing 37, member A5, pseudogene miscRNA LRRC37A5P leucine rich repeat containing 37, member A5, pseudogene O - 20121230 -9606 652974 RPL17P2 - RPL17_13_1376 HGNC:23540 14 14q23.1 ribosomal protein L17 pseudogene 2 pseudo RPL17P2 ribosomal protein L17 pseudogene 2 O - 20121230 -9606 652975 RPL21P6 - RPL21_47_1368 HGNC:23542 14 14q22.3 ribosomal protein L21 pseudogene 6 pseudo RPL21P6 ribosomal protein L21 pseudogene 6 O - 20121230 -9606 652978 RPL7AP2 - RPL7A_26_1357 HGNC:23552 14 14q21.1 ribosomal protein L7a pseudogene 2 pseudo RPL7AP2 ribosomal protein L7a pseudogene 2 O - 20121230 -9606 652980 RPS28P1 - - HGNC:23561 14 14q23.2 ribosomal protein S28 pseudogene 1 pseudo RPS28P1 ribosomal protein S28 pseudogene 1 O - 20121230 -9606 652983 RPL35AP2 RP11-571F15.2 RPL35A_10_973|bA571F15.2 HGNC:19914 9 9p ribosomal protein L35a pseudogene 2 pseudo RPL35AP2 ribosomal protein L35a pseudogene 2 O - 20121230 -9606 652985 RPL7AP4 - RPL7A_27_1369 HGNC:23554 14 14q22.3 ribosomal protein L7a pseudogene 4 pseudo RPL7AP4 ribosomal protein L7a pseudogene 4 O - 20121230 -9606 652990 LOC652990 - - - 6 6p21.1 uncharacterized LOC652990 unknown - - - - 20120710 -9606 652991 SKOR2 - CORL2|FUSSEL18 HGNC:32695|Ensembl:ENSG00000215474|Vega:OTTHUMG00000180309 18 18q21.1 SKI family transcriptional corepressor 2 protein-coding SKOR2 SKI family transcriptional corepressor 2 O LBX1 corepressor 1-like protein|functional Smad-suppressing element on chromosome 18|functional smad suppressing element 18|fussel-18|ladybird homeobox corepressor 1-like protein 20121230 -9606 652993 LOC652993 - - - 12 12q21 uncharacterized LOC652993 unknown - - - - 20120508 -9606 652995 UCA1 - CUDR|LINC00178|NCRNA00178 HGNC:37126 19 19p13.12 urothelial cancer associated 1 (non-protein coding) miscRNA UCA1 urothelial cancer associated 1 (non-protein coding) O - 20121230 -9606 653017 TBC1D3P3 - USP6P1 HGNC:32408 17 17p11.2 TBC1 domain family, member 3 pseudogene 3 pseudo TBC1D3P3 TBC1 domain family, member 3 pseudogene 3 O - 20121230 -9606 653018 TBC1D3P4 - USP6P2 HGNC:32409 17 17p11.2 TBC1 domain family, member 3 pseudogene 4 pseudo TBC1D3P4 TBC1 domain family, member 3 pseudogene 4 O - 20121021 -9606 653042 REXO1L4P - - HGNC:32241 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 4, pseudogene pseudo REXO1L4P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 4, pseudogene O - 20121230 -9606 653045 PTPN20C RP11-164N7.1 bA164N7.3 HGNC:23424 10 10q11.22 protein tyrosine phosphatase, non-receptor type 20C pseudo PTPN20C protein tyrosine phosphatase, non-receptor type 20C O - 20121230 -9606 653048 XAGE1C RP13-34L8.2 CT12.1|CT12.1C|CTP9|GAGED2 HGNC:30679|MIM:300744|Ensembl:ENSG00000183461|Vega:OTTHUMG00000021566 X Xp11.22 X antigen family, member 1C protein-coding XAGE1C X antigen family, member 1C O G antigen family D member 2|cancer/testis antigen 12.1|cancer/testis antigen family 12, member 1c|cancer/testis associated protein|protein XAGE-1 20121209 -9606 653061 GOLGA8S - - HGNC:44409 15 15q11.2 golgin A8 family, member S pseudo GOLGA8S golgin A8 family, member S O - 20121230 -9606 653067 XAGE1E RP13-34L8.5 CT12.1|CT12.1E|CTP9|GAGED2 HGNC:18372|MIM:300745|Ensembl:ENSG00000204375|Vega:OTTHUMG00000021569 X Xp11.22 X antigen family, member 1E protein-coding XAGE1E X antigen family, member 1E O G antigen family D member 2|cancer/testis antigen 12.1|cancer/testis antigen family 12, member 1e|cancer/testis associated protein|protein XAGE-1 20121230 -9606 653071 LOC653071 - - - 4 - ankyrin repeat domain 57 pseudogene pseudo - - - - 20121209 -9606 653073 GOLGA8J - - HGNC:38650|Ensembl:ENSG00000179938|Vega:OTTHUMG00000175635 15 15q13.2 golgin A8 family, member J protein-coding GOLGA8J golgin A8 family, member J O Golgin subfamily A member 8-like protein 3|golgin subfamily A member 8J 20121230 -9606 653075 GOLGA8T - - HGNC:44410 15 15q13.2 golgin A8 family, member T pseudo GOLGA8T golgin A8 family, member T O - 20121230 -9606 653079 RPL21P98 - RPL21_47_1259 HGNC:36397 12 12q21.2 ribosomal protein L21 pseudogene 98 pseudo RPL21P98 ribosomal protein L21 pseudogene 98 O - 20121230 -9606 653080 LOC653080 - - - 5 5q13.2 glucuronidase, beta pseudogene pseudo - - - - 20121230 -9606 653082 ZDHHC11B - DHHC-11B HGNC:32962 5 5p15.33 zinc finger, DHHC-type containing 11B protein-coding ZDHHC11B zinc finger, DHHC-type containing 11B O Probable palmitoyltransferase ZDHHC11B|Zinc finger DHHC domain-containing protein 11B 20121230 -9606 653108 CXADRP1 - CAR|CXADRP HGNC:23770 21 21q11.2 coxsackie virus and adenovirus receptor pseudogene 1 pseudo CXADRP1 coxsackie virus and adenovirus receptor pseudogene 1 O - 20121230 -9606 653113 FAM86FP - - HGNC:42357 12 12p13.31 family with sequence similarity 86, member A pseudogene pseudo FAM86FP family with sequence similarity 86, member F, pseudogene O - 20121230 -9606 653114 FAM74A2 RP11-95K23.4 - HGNC:32030 9 9p12 family with sequence similarity 74, member A2 miscRNA FAM74A2 family with sequence similarity 74, member A2 O - 20121209 -9606 653115 LOC653115 - - - 3 3p12.3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 653121 ZBTB8A - BOZF1|ZBTB8|ZNF916A HGNC:24172|Ensembl:ENSG00000160062|HPRD:10315|Vega:OTTHUMG00000007855 1 1p35.1 zinc finger and BTB domain containing 8A protein-coding ZBTB8A zinc finger and BTB domain containing 8A O BOZ-F1|BTB/POZ and zinc-finger domain-containing factor|BTB/POZ and zinc-finger domains factor on chromosome 1|zinc finger and BTB domain containing 8|zinc finger and BTB domain-containing protein 8A 20121230 -9606 653122 LSM12P1 - LSM12P HGNC:32453 8 8p12 LSM12 homolog (S. cerevisiae) pseudogene 1 pseudo LSM12P1 LSM12 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 653123 FAM74A6 - - HGNC:34036 9 9p12 family with sequence similarity 74, member A6 pseudo FAM74A6 family with sequence similarity 74, member A6 O - 20121209 -9606 653125 GOLGA8K - - HGNC:38652|Ensembl:ENSG00000249931|Vega:OTTHUMG00000175395 15 15q13.3 golgin A8 family, member K protein-coding GOLGA8K golgin A8 family, member K O putative golgin subfamily A member 8I-like 20121209 -9606 653129 PTPN20A - CT126|PTPN20B|bA142I17.1|hPTPN20 HGNC:23422|MIM:610630|Ensembl:ENSG00000204179|Vega:OTTHUMG00000018094 10 10q11.22 protein tyrosine phosphatase, non-receptor type 20A protein-coding PTPN20A protein tyrosine phosphatase, non-receptor type 20A O cancer/testis antigen 126|tyrosine-protein phosphatase non-receptor type 20 20121230 -9606 653140 FAM228A - C2orf84 HGNC:34418|Ensembl:ENSG00000186453|Vega:OTTHUMG00000151903 2 2p23.3 family with sequence similarity 228, member A protein-coding FAM228A family with sequence similarity 228, member A O UPF0638 protein C2orf84|protein FAM228A 20121230 -9606 653145 ANXA8 RP11-301J7.3 ANX8 HGNC:546|MIM:602396|Ensembl:ENSG00000165390|Vega:OTTHUMG00000018143 10 10q11.22 annexin A8 protein-coding ANXA8 annexin A8 O VAC-beta|annexin VIII|annexin-8|vascular anticoagulant-beta 20121230 -9606 653147 RPL26P30 hCG_1995786 RPL26_10_1113 HGNC:36733 11 11p15.5 ribosomal protein L26 pseudogene 30 pseudo RPL26P30 ribosomal protein L26 pseudogene 30 O - 20121230 -9606 653149 NBPF6 - - HGNC:31988|MIM:613996|Ensembl:ENSG00000186086|Vega:OTTHUMG00000039830 1 1p13.3 neuroblastoma breakpoint family, member 6 protein-coding NBPF6 neuroblastoma breakpoint family, member 6 O neuroblastoma breakpoint family member 6 20121230 -9606 653155 LOC653155 - - - X Xq23 PRP4 pre-mRNA processing factor 4 homolog B (yeast) pseudogene pseudo - - - - 20121230 -9606 653156 RPL21P53 - RPL21_19_517 HGNC:36574 4 4q28.1 ribosomal protein L21 pseudogene 53 pseudo RPL21P53 ribosomal protein L21 pseudogene 53 O - 20121230 -9606 653160 LOC653160 - - - 1 1p34.3 uncharacterized LOC653160 miscRNA - - - - 20121230 -9606 653162 RPSAP9 - LAMR1P9|RPSA_20_986 HGNC:31463 9 9q21.13 ribosomal protein SA pseudogene 9 pseudo RPSAP9 ribosomal protein SA pseudogene 9 O - 20121230 -9606 653163 LCN1P2 - LCN1L2|bA244N20.11 HGNC:23680 9 9q34.2 lipocalin 1 pseudogene 2 pseudo LCN1P2 lipocalin 1 pseudogene 2 O - 20121230 -9606 653166 OR1D4 - OR17-30 HGNC:8185 17 17p13.3 olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene) pseudo OR1D4 olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene) O olfactory receptor 1D4 20121230 -9606 653174 TSPY6P - TSPYP6 HGNC:34039 Y Yp11.2 testis specific protein, Y-linked 6, pseudogene pseudo TSPY6P testis specific protein, Y-linked 6, pseudogene O - 20121209 -9606 653175 HAUS6P1 - - HGNC:43764 7 7p12.1 HAUS augmin-like complex, subunit 6 pseudogene 1 pseudo HAUS6P1 HAUS augmin-like complex, subunit 6 pseudogene 1 O - 20121230 -9606 653188 GUSBP3 - - HGNC:37301 5 5q13.2 glucuronidase, beta pseudogene 3 pseudo GUSBP3 glucuronidase, beta pseudogene 3 O - 20121230 -9606 653189 BTF3L4P2 - BTF3L4P HGNC:39646 2 2q24.2 basic transcription factor 3-like 4 pseudogene 2 pseudo BTF3L4P2 basic transcription factor 3-like 4 pseudogene 2 O - 20121230 -9606 653190 ABCC6P1 - - HGNC:33352 16 16p12.3 ATP-binding cassette, sub-family C, member 6 pseudogene 1 pseudo ABCC6P1 ATP-binding cassette, sub-family C, member 6 pseudogene 1 O - 20121230 -9606 653192 TRIM43B - - HGNC:37146 2 2q11.1 tripartite motif containing 43B protein-coding TRIM43B tripartite motif containing 43B O Tripartite motif-containing protein 43-like protein 1|tripartite motif-containing 43B|tripartite motif-containing protein 43B 20121230 -9606 653194 KHDC1P1 - - HGNC:43757 6 6q13 KH homology domain containing 1 pseudogene 1 pseudo KHDC1P1 KH homology domain containing 1 pseudogene 1 O - 20121209 -9606 653199 FAM115B - - HGNC:33604 7 7q35 family with sequence similarity 115, member A pseudogene pseudo FAM115B family with sequence similarity 115, member B (pseudogene) O - 20121230 -9606 653203 LOC653203 - - - 22 22q11.21 long intergenic non-protein coding RNA 281 pseudogene pseudo - - - - 20121209 -9606 653214 PPIAP22 - PPIA3L|PPIAL3 HGNC:17236 21 21q21.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene 22 pseudo PPIAP22 peptidylprolyl isomerase A (cyclophilin A) pseudogene 22 O - 20121230 -9606 653219 XAGE1A RP11-485B17.7 CT12.1|CT12.1A|CTP9|GAGED2|XAGE1 HGNC:4111|MIM:300742|Ensembl:ENSG00000204379|Vega:OTTHUMG00000021557 X Xp11.22 X antigen family, member 1A protein-coding XAGE1A X antigen family, member 1A O G antigen family D member 2|cancer/testis antigen 12.1|cancer/testis antigen family 12, member 1a|cancer/testis associated protein|protein XAGE-1 20121230 -9606 653220 XAGE1B RP11-485B17.2 CT12.1|CT12.1B|CTP9|GAGED2 HGNC:25400|MIM:300743|Ensembl:ENSG00000204382|Vega:OTTHUMG00000163577 X Xp11.22 X antigen family, member 1B protein-coding XAGE1B X antigen family, member 1B O G antigen family D member 2|cancer/testis antigen 12.1|cancer/testis antigen family 12, member 1b|cancer/testis associated protein|protein XAGE-1 20121230 -9606 653226 SRP9P1 hCG_1781062 SRP9L1 HGNC:23402 10 10q23.32 signal recognition particle 9 pseudogene 1 pseudo SRP9P1 signal recognition particle 9 pseudogene 1 O - 20121230 -9606 653232 RPL15P3 RP11-511D14.1 RPL15_3_658|bA511S14.1 HGNC:21538 6 6p24.1 ribosomal protein L15 pseudogene 3 pseudo RPL15P3 ribosomal protein L15 pseudogene 3 O - 20121230 -9606 653234 CTGLF10P - bA358L16.1 HGNC:23659 10 10q11.22 centaurin, gamma-like family, member 10 pseudogene pseudo CTGLF10P centaurin, gamma-like family, member 10 pseudogene O - 20121230 -9606 653236 RPL23AP49 - RPL23A_12_383 HGNC:35689 3 3p12.3 ribosomal protein L23a pseudogene 49 pseudo RPL23AP49 ribosomal protein L23a pseudogene 49 O - 20121230 -9606 653238 GTF2H2B - - HGNC:31393 5 5q13.2 general transcription factor IIH, polypeptide 2B (pseudogene) pseudo GTF2H2B general transcription factor IIH, polypeptide 2B (pseudogene) O - 20121230 -9606 653240 KRTAP4-11 hCG_2005471 KAP4.11|KAP4.14|KRTAP4-14|KRTAP4.14 HGNC:18911|Ensembl:ENSG00000212721|Vega:OTTHUMG00000133586 17 17q21.2 keratin associated protein 4-11 protein-coding KRTAP4-11 keratin associated protein 4-11 O keratin associated protein 4-14|keratin-associated protein 4-11|keratin-associated protein 4-14|keratin-associated protein 4.11|keratin-associated protein 4.14|ultrahigh sulfur keratin-associated protein 4.14 20121230 -9606 653247 PRB2 - IB-9|PRPPRB1|Ps|cP7 HGNC:9338|MIM:168810|Ensembl:ENSG00000121335|HPRD:18511|Vega:OTTHUMG00000156975 12 12p13.2 proline-rich protein BstNI subfamily 2 protein-coding PRB2 proline-rich protein BstNI subfamily 2 O Basic proline-rich peptide P-E|basic salivary proline-rich protein 2|con1 glycoprotein|proline-rich protein BstNI, subfamily-2 (parotid size variant)|salivary proline-rich protein 2 20121230 -9606 653252 TIMM23B RP11-592B15.7 TIMM23|bA592B15.7 HGNC:23581|Ensembl:ENSG00000204152|Vega:OTTHUMG00000018204 10 10q11.23 translocase of inner mitochondrial membrane 23 homolog B (yeast) protein-coding TIMM23B translocase of inner mitochondrial membrane 23 homolog B (yeast) O putative mitochondrial import inner membrane translocase subunit Tim23B 20121216 -9606 653259 CTGLF11P - bA145E20.1 HGNC:23660 10 10q11.22 centaurin, gamma-like family, member 11 pseudogene pseudo CTGLF11P centaurin, gamma-like family, member 11 pseudogene O - 20121230 -9606 653268 AGAP7 RP11-109G10.3 CTGLF4|bA109G10.1 HGNC:23465|Ensembl:ENSG00000204169|Vega:OTTHUMG00000018211 10 10q11.23 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7 protein-coding AGAP7 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7 O AGAP-7|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 7|centaurin, gamma-like family, member 4|centaurin-gamma-like family member 4 20121230 -9606 653269 POTEI - POTE2beta HGNC:37093|Ensembl:ENSG00000196834|Vega:OTTHUMG00000153925 2 2q21.1 POTE ankyrin domain family, member I protein-coding POTEI POTE ankyrin domain family, member I O - 20121230 -9606 653275 CFC1B - - HGNC:33983|Ensembl:ENSG00000152093|Vega:OTTHUMG00000153959 2 2q21.1 cripto, FRL-1, cryptic family 1B protein-coding CFC1B cripto, FRL-1, cryptic family 1B O cryptic family protein 1B 20121209 -9606 653282 CT47A7 - CT47.7 HGNC:33288|MIM:300786|Ensembl:ENSG00000228517|Vega:OTTHUMG00000022317 X Xq24 cancer/testis antigen family 47, member A7 protein-coding CT47A7 cancer/testis antigen family 47, member A7 O cancer/testis CT47 family, member 7|cancer/testis antigen 47A 20121212 -9606 653288 TSPY7P - TSPYP7 HGNC:34040 Y Yp11.2 testis specific protein, Y-linked 7, pseudogene pseudo TSPY7P testis specific protein, Y-linked 7, pseudogene O - 20121209 -9606 653303 LOC653303 - - - 11 11q23.3 proprotein convertase subtilisin/kexin type 7 pseudogene pseudo - - - - 20121230 -9606 653308 ASAH2B RP11-564C4.1 ASAH2C|ASAH2L|bA449O16.3 HGNC:23456|MIM:610987|Ensembl:ENSG00000204147|Vega:OTTHUMG00000018239 10 10q11.23 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B protein-coding ASAH2B N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B O ASAH2-like protein|putative inactive N-acylsphingosine amidohydrolase 2B|putative inactive neutral ceramidase B|putative inactive non-lysosomal ceramidase B 20121230 -9606 653314 RPL19P9 - RPL19_7_643 HGNC:35918 5 5q35.3 ribosomal protein L19 pseudogene 9 pseudo RPL19P9 ribosomal protein L19 pseudogene 9 O - 20121230 -9606 653316 FAM153C - NY-REN-7-like HGNC:33936 5 5q35.3 family with sequence similarity 153, member C, pseudogene pseudo FAM153C family with sequence similarity 153, member C O - 20121230 -9606 653319 KIAA0895L - - HGNC:34408|Ensembl:ENSG00000196123|Vega:OTTHUMG00000172891 16 16q22.1 KIAA0895-like protein-coding KIAA0895L KIAA0895-like O uncharacterized protein KIAA0895-like 20121230 -9606 653333 FAM86B2 - - HGNC:32222|Ensembl:ENSG00000145002|Vega:OTTHUMG00000165462 8 8p23.1 family with sequence similarity 86, member B2 protein-coding FAM86B2 family with sequence similarity 86, member B2 O protein FAM86B2 20121230 -9606 653354 LOC653354 - - - X Xq22.1 armadillo repeat containing, X-linked 6 pseudogene pseudo - - - - 20121230 -9606 653361 NCF1 - NCF1A|NOXO2|SH3PXD1A|p47phox HGNC:7660|MIM:608512|Ensembl:ENSG00000158517|Vega:OTTHUMG00000149965 7 7q11.23 neutrophil cytosolic factor 1 protein-coding NCF1 neutrophil cytosolic factor 1 O 47 kDa autosomal chronic granulomatous disease protein|47 kDa neutrophil oxidase factor|NADPH oxidase organizer 2|NCF-1|NCF-47K|SH3 and PX domain-containing protein 1A|neutrophil NADPH oxidase factor 1|neutrophil cytosol factor 1|neutrophil cytosolic factor 1, (chronic granulomatous disease, autosomal 1)|nox organizer 2|nox-organizing protein 2|p47-phox 20121230 -9606 653363 TEX28P2 - CXorf2B|pTEX HGNC:33357 X Xq28 testis expressed 28 pseudogene 2 pseudo TEX28P2 testis expressed 28 pseudogene 2 O - 20121230 -9606 653364 HSPB1P2 - HSPBL3 HGNC:5252 X Xp11.23 heat shock 27kDa protein 1 pseudogene 2 pseudo HSPB1P2 heat shock 27kDa protein 1 pseudogene 2 O - 20121230 -9606 653365 ASAH2C RP11-98I6.3 bA98I6.3 HGNC:23457|Vega:OTTHUMG00000018134 10 10q11.22 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2C pseudo ASAH2C N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2C O - 20121230 -9606 653375 LOC653375 - - - 7 7q11.23 RCC1-like G exchanging factor-like protein-coding - - - - 20121230 -9606 653380 LOC653380 - - - 17 - TBC1 domain family member 3C-like protein ENSP00000341742 protein-coding - - - - 20120818 -9606 653381 SORD2 - - - 15 15q21.1 SORD pseudogene pseudo - - - - 20121230 -9606 653390 RRN3P2 - - HGNC:37619 16 16p11.2 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 pseudo RRN3P2 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 653394 PGM5P1 RP11-391M20.2 - HGNC:28452 9 9q21.11 phosphoglucomutase 5 pseudogene 1 pseudo PGM5P1 phosphoglucomutase 5 pseudogene 1 O - 20121230 -9606 653399 GSTTP2 - - HGNC:33606 22 22q11.23 glutathione S-transferase theta pseudogene 2 pseudo GSTTP2 glutathione S-transferase theta pseudogene 2 O - 20121230 -9606 653404 FOXD4L6 - - HGNC:31986|Ensembl:ENSG00000204793|Vega:OTTHUMG00000066822 9 9q21.11 forkhead box D4-like 6 protein-coding FOXD4L6 forkhead box D4-like 6 O FOXD4-like 6|forkhead box protein D4-like 6 20121216 -9606 653406 LOC653406 - - - 5 5q13.2 NLR family, apoptosis inhibitory protein pseudogene pseudo - - - - 20121230 -9606 653423 SPAG11A - EDDM2A|HE2 HGNC:33342|Ensembl:ENSG00000178287|Vega:OTTHUMG00000162440 8 8p23.1 sperm associated antigen 11A protein-coding SPAG11A sperm associated antigen 11A O epididymal protein 2A|human epididymis-specific protein 2|sperm antigen HE2|sperm-associated antigen 11A 20121230 -9606 653427 FOXD4L5 - bA15J10.2 HGNC:18522|Ensembl:ENSG00000204779|Vega:OTTHUMG00000013332 9 9q21.11 forkhead box D4-like 5 protein-coding FOXD4L5 forkhead box D4-like 5 O FOXD4-like 5|forkhead box protein D4-like 5 20121230 -9606 653435 LOC653435 - - - 7 7q11.21 glucuronidase, beta pseudogene pseudo - - - - 20121230 -9606 653436 ANKRD20A7P CR848007.8 - HGNC:31980 9 9p11.2 ankyrin repeat domain 20 family, member A7, pseudogene pseudo ANKRD20A7P ankyrin repeat domain 20 family, member A7, pseudogene O - 20121230 -9606 653437 AQP12B - INSSA3 HGNC:6096|Ensembl:ENSG00000185176|Vega:OTTHUMG00000152263 2 2q37.3 aquaporin 12B protein-coding AQP12B aquaporin 12B O AQP-12B|aquaporin-12B|insulin synthesis associated 3 20121230 -9606 653440 WASH6P - CXYorf1|FAM39A|WASH HGNC:31685|HPRD:16814 X|Y Xq28;Yq12 WAS protein family homolog 6 pseudogene pseudo WASH6P WAS protein family homolog 6 pseudogene O - 20121230 -9606 653441 PHC1P1 - PHC1B HGNC:34502 12 12q13.2 polyhomeotic homolog 1 (Drosophila) pseudogene 1 pseudo PHC1P1 polyhomeotic homolog 1 (Drosophila) pseudogene 1 O - 20121230 -9606 653447 LOC653447 hCG_1641229 - - 2 2q32.2 heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudogene pseudo - - - - 20121230 -9606 653450 FAM21D RP11-592B15.1 bA592B15.4 HGNC:23418 10 10q11.23 family with sequence similarity 21, member D pseudo FAM21D family with sequence similarity 21, member D O - 20121230 -9606 653453 LOC653453 - - - 9 9p11.2 fibroblast growth factor 7 pseudogene pseudo - - - - 20121209 -9606 653458 LOC653458 - - - 9 9q13 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121209 -9606 653464 SRGAP2C RP11-343N15.3 SRGAP2P1 HGNC:30584|MIM:614704 1 1p11.2 SLIT-ROBO Rho GTPase activating protein 2C protein-coding SRGAP2C SLIT-ROBO Rho GTPase activating protein 2C O SLIT-ROBO Rho GTPase activating protein 2 pseudogene 1|SLIT-ROBO Rho GTPase-activating protein 2C 20121230 -9606 653479 MRPL45P2 - - HGNC:29716 17 17q21.32 mitochondrial ribosomal protein L45 pseudogene 2 pseudo MRPL45P2 mitochondrial ribosomal protein L45 pseudogene 2 O - 20121230 -9606 653483 MLLT4-AS1 RP3-431P23.3 C6orf124|HGC6.4|dJ431P23.3 HGNC:21236 6 6q27 MLLT4 antisense RNA 1 (head to head) miscRNA MLLT4-AS1 MLLT4 antisense RNA 1 (head to head) O - 20121230 -9606 653486 LOC653486 hCG_1741344 - - 17 17p secretoglobin, family 1C, member 1-like protein-coding - - - - 20121230 -9606 653489 RGPD3 - RGP3 HGNC:32416|MIM:612706|Ensembl:ENSG00000153165|Vega:OTTHUMG00000153182 2 2q13 RANBP2-like and GRIP domain containing 3 protein-coding RGPD3 RANBP2-like and GRIP domain containing 3 O ranBP2-like and GRIP domain-containing protein 3 20121230 -9606 653492 PSG10P - PSG10|PSG12 HGNC:9515|MIM:176399 19 19q13.2 pregnancy specific beta-1-glycoprotein 10, pseudogene pseudo PSG10P pregnancy specific beta-1-glycoprotein 10, pseudogene O - 20121230 -9606 653499 LGALS7B - GAL7|Gal-7|HKL-14|LGALS7|PI7 HGNC:34447|Ensembl:ENSG00000178934 19 19q13.2 lectin, galactoside-binding, soluble, 7B protein-coding LGALS7B lectin, galactoside-binding, soluble, 7B O galectin 7B|galectin-7|galectin-7B|keratinocyte lectin 14|lectin galactoside-binding soluble 7|p53-induced gene 1 protein|p53-induced protein 1 20121230 -9606 653501 LOC653501 - - - 9 9p13.1 zinc finger protein 658 pseudogene pseudo - - - - 20121230 -9606 653503 LOC653503 - - - 11 11p15.4 guanine nucleotide binding protein (G protein), gamma 10 pseudogene pseudo - - - - 20121230 -9606 653505 PPIAL4B - COAS-2 HGNC:33994|Ensembl:ENSG00000255854|Vega:OTTHUMG00000013667 1 1q21.1 peptidylprolyl isomerase A (cyclophilin A)-like 4B protein-coding PPIAL4B peptidylprolyl isomerase A (cyclophilin A)-like 4B O chromosome 1-amplified sequence 2|cyclophilin homolog overexpressed in liver cancer|peptidyl-prolyl cis-trans isomerase A-like 4A/B/C|peptidylprolyl cis-trans isomerase A-like 4A/B/C 20121230 -9606 653509 SFTPA1 RP11-589B3.2 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 HGNC:10798|MIM:178630|Ensembl:ENSG00000122852|Vega:OTTHUMG00000018565 10 10q22.3 surfactant protein A1 protein-coding SFTPA1 surfactant protein A1 O 35 kDa pulmonary surfactant-associated protein|alveolar proteinosis protein|collectin-4|pulmonary surfactant-associated protein A1|surfactant protein A1 variant AB'D' 6A2|surfactant protein A1 variant AB'D' 6A3|surfactant protein A1 variant AB'D' 6A4|surfactant protein A1 variant ACD' 6A2|surfactant protein A1 variant ACD' 6A3|surfactant protein A1 variant ACD' 6A4|surfactant protein A1 variant AD' 6A|surfactant protein A1 variant AD' 6A2|surfactant protein A1 variant AD' 6A3|surfactant protein A1 variant AD' 6A4|surfactant protein A1B|surfactant, pulmonary-associated protein A1A|surfactant, pulmonary-associated protein A1B 20121230 -9606 653510 CBWD4P - - HGNC:18520 9 9q13 COBW domain containing 4 pseudogene pseudo CBWD4P COBW domain containing 4 pseudogene O - 20121209 -9606 653513 LOC653513 - - - 1 1q21.1 phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 653519 GPR89A RP11-373C9.3 GPR89B|UNQ192 HGNC:31984|MIM:612821|Ensembl:ENSG00000117262|Vega:OTTHUMG00000013738 1 1q21.1 G protein-coupled receptor 89A protein-coding GPR89A G protein-coupled receptor 89A O Golgi pH regulator A|protein GPR89|putative MAPK-activating protein PM01|putative NF-kappa-B-activating protein 90 20121230 -9606 653541 LOC653541 - - - 4 4q35.2 double homeobox, 4-like protein-coding - - - - 20120318 -9606 653543 DUX4L7 - - HGNC:37266|Ensembl:ENSG00000258755|Vega:OTTHUMG00000161314 4 4q35.2 double homeobox 4 like 7 protein-coding DUX4L7 double homeobox 4 like 7 O double homeobox protein 4-like protein 7 20121230 -9606 653544 DUX4L6 - - HGNC:37265|Ensembl:ENSG00000258697|Vega:OTTHUMG00000161313 4 4q35.2 double homeobox 4 like 6 protein-coding DUX4L6 double homeobox 4 like 6 O double homeobox protein 4-like protein 6 20121230 -9606 653545 DUX4L5 - - HGNC:38689|Ensembl:ENSG00000259063|Vega:OTTHUMG00000161315 4 4q35.2 double homeobox 4 like 5 protein-coding DUX4L5 double homeobox 4 like 5 O double homeobox protein 4-like protein 5 20121209 -9606 653548 DUX4L3 - - HGNC:38688|Ensembl:ENSG00000259034|Vega:OTTHUMG00000161319 4 4q35.2 double homeobox 4 like 3 protein-coding DUX4L3 double homeobox 4 like 3 O double homeobox protein 4-like protein 3 20121230 -9606 653550 TP53TG3C - TP53TG3 HGNC:42962|Ensembl:ENSG00000205457|Vega:OTTHUMG00000176458 16 16p11.2 TP53 target 3C protein-coding TP53TG3C TP53 target 3C O TP53-inducible gene 3 protein|TP53-target gene 3 protein 20121209 -9606 653553 HSPB1P1 - HSPBL2 HGNC:5251 9 9q21.13 heat shock 27kDa protein 1 pseudogene 1 pseudo HSPB1P1 heat shock 27kDa protein 1 pseudogene 1 O - 20121230 -9606 653557 LOC653557 - - - 16 16p11.2 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121230 -9606 653562 LOC653562 - - - 16 16p11.2 sodium- and chloride-dependent creatine transporter 1-like pseudo - - - - 20121230 -9606 653566 LOC653566 - - - 1 1p35.3 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 653567 TMEM236 RP11-162I21.1 FAM23A|FAM23B|bA162I21.2|bA16O1.2 HGNC:23473|Ensembl:ENSG00000148483|Vega:OTTHUMG00000017753 10 10p12.33 transmembrane protein 236 protein-coding TMEM236 transmembrane protein 236 O family with sequence similarity 23, member A|family with sequence similarity 23, member B 20121216 -9606 653579 CD177P1 - CD177P HGNC:34508 19 19q13.31 CD177 molecule pseudogene 1 pseudo CD177P1 CD177 molecule pseudogene 1 O - 20121230 -9606 653581 LOC653581 - - - 12 12q14.2 uncharacterized LOC653581 unknown - - - - 20120511 -9606 653583 PHLDB3 hCG_1995673 - HGNC:30499|Ensembl:ENSG00000176531|Vega:OTTHUMG00000150693 19 19q13.31 pleckstrin homology-like domain, family B, member 3 protein-coding PHLDB3 pleckstrin homology-like domain, family B, member 3 O pleckstrin homology-like domain family B member 3 20121230 -9606 653588 LOC653588 - - - X Xq11.1 Sjogren syndrome antigen B (autoantigen La) pseudogene pseudo - - - - 20121230 -9606 653590 GGTLC5P - GGT HGNC:33427 22 22q11.21 gamma-glutamyltransferase light chain 5 pseudogene pseudo GGTLC5P gamma-glutamyltransferase light chain 5 pseudogene O - 20121209 -9606 653598 PPIAL4C RP11-277L2.1 COAS-2 HGNC:33995|Ensembl:ENSG00000198161|Vega:OTTHUMG00000013954 1 1q21.2 peptidylprolyl isomerase A (cyclophilin A)-like 4C protein-coding PPIAL4C peptidylprolyl isomerase A (cyclophilin A)-like 4C O PPIase A-like 4A|chromosome 1-amplified sequence 2|cyclophilin homolog overexpressed in liver cancer|peptidyl-prolyl cis-trans isomerase A-like 4A/B/C|peptidylprolyl cis-trans isomerase A-like 4A/B/C 20121230 -9606 653602 LOC653602 - - - 2 2p24.3 uncharacterized LOC653602 unknown - - - - 20121018 -9606 653604 HIST2H3D - - HGNC:25311|Ensembl:ENSG00000183598|Vega:OTTHUMG00000012092 1 1q21.2 histone cluster 2, H3d protein-coding HIST2H3D histone cluster 2, H3d O histone 2, H3d|histone H3.2 20121230 -9606 653606 PRAMEF22 WI2-3308P17.1 PRAMEF3L HGNC:34393|Ensembl:ENSG00000204508|Vega:OTTHUMG00000074726 1 1p36.21 PRAME family member 22 protein-coding PRAMEF22 PRAME family member 22 O - 20121216 -9606 653619 PRAMEF15 - - HGNC:26764|Ensembl:ENSG00000157358|Vega:OTTHUMG00000007921 1 1p36.21 PRAME family member 15 protein-coding PRAMEF15 PRAME family member 15 O PRAME family member 9/15 20121230 -9606 653631 LOC653631 - - - 1 1p31.1 axin interactor, dorsalization associated pseudogene pseudo - - - - 20121230 -9606 653635 WASH7P - FAM39F|WASH5P HGNC:38034 1 1p36.33 WAS protein family homolog 7 pseudogene pseudo WASH7P WAS protein family homolog 7 pseudogene O - 20121230 -9606 653639 LYPLA2P1 - APT|LYPLA2L|dJ570F3.6 HGNC:21069 6 6p21.32 lysophospholipase II pseudogene 1 pseudo LYPLA2P1 lysophospholipase II pseudogene 1 O - 20121230 -9606 653641 GOLGA6C - - HGNC:32206|Ensembl:ENSG00000167195|Vega:OTTHUMG00000172671 15 15q24.2 golgin A6 family, member C protein-coding GOLGA6C golgin A6 family, member C O Golgin subfamily A member 6C|golgi autoantigen, golgin subfamily a, 6C|putative golgin subfamily A member 6C 20121230 -9606 653643 GOLGA6D - - HGNC:32204|Ensembl:ENSG00000140478|Vega:OTTHUMG00000172672 15 15q24.2 golgin A6 family, member D protein-coding GOLGA6D golgin A6 family, member D O golgi autoantigen, golgin subfamily a, 6D|putative golgin subfamily A member 6D 20121230 -9606 653645 TBC1D3P1-DHX40P1 - DHX40P|DHX40P1|TBC1D3P1 HGNC:42362 17 17q23 TBC1D3P1-DHX40P1 readthrough transcribed pseudogene pseudo TBC1D3P1-DHX40P1 TBC1D3P1-DHX40P1 readthrough transcribed pseudogene O - 20121230 -9606 653650 PDPK2 - - - 16 16p13.3 3-phosphoinositide dependent protein kinase-1 pseudogene pseudo - - - - 20121230 -9606 653653 LOC653653 - - - 17 17q23.1 adaptor-related protein complex 1, sigma 2 subunit pseudogene pseudo - - - - 20121230 -9606 653656 MBD3L4 - - HGNC:37206|Ensembl:ENSG00000205718 19 19p13.2 methyl-CpG binding domain protein 3-like 4 protein-coding MBD3L4 methyl-CpG binding domain protein 3-like 4 O MBD3-like 4|MBD3-like protein 4|putative methyl-CpG-binding domain protein 3-like 4 20121230 -9606 653657 MBD3L3 - - HGNC:37205|Ensembl:ENSG00000182315 19 19p13.2 methyl-CpG binding domain protein 3-like 3 protein-coding MBD3L3 methyl-CpG binding domain protein 3-like 3 O MBD3-like 3|MBD3-like protein 3|putative methyl-CpG-binding domain protein 3-like 3 20121230 -9606 653658 RPS23P8 - RPS23_5_1783 HGNC:35982 X Xq13.1 ribosomal protein S23 pseudogene 8 pseudo RPS23P8 ribosomal protein S23 pseudogene 8 O - 20121230 -9606 653659 TMEM183B - C1orf37-DUP HGNC:33205|MIM:611365 3 3q25.1 transmembrane protein 183B protein-coding TMEM183B transmembrane protein 183B O - 20121230 -9606 653665 RPL21P93 - RPL21_36_1027 HGNC:35646 10 10p12.1 ribosomal protein L21 pseudogene 93 pseudo RPL21P93 ribosomal protein L21 pseudogene 93 O - 20121230 -9606 653677 SEC1P - SEC1 HGNC:44149 19 19q13.33 secretory blood group 1, pseudogene pseudo SEC1P secretory blood group 1, pseudogene O - 20121230 -9606 653687 FAM226B hCG_1731871 CXorf50B|LINC00246B|NCRNA00246B HGNC:31964 X Xq13.2 family with sequence similarity 226, member B (non-protein coding) miscRNA FAM226B family with sequence similarity 226, member B (non-protein coding) O - 20121230 -9606 653689 GSTT2B - GSTT2P HGNC:33437|Ensembl:ENSG00000133433|Vega:OTTHUMG00000150774 22 22q11.23 glutathione S-transferase theta 2B (gene/pseudogene) protein-coding GSTT2B glutathione S-transferase theta 2B (gene/pseudogene) O GST class-theta-2|glutathione S-transferase theta 2|glutathione S-transferase theta-2|glutathione S-transferase theta-2B 20121230 -9606 653691 FAM115D - FAM139B HGNC:33603 7 7q35 family with sequence similarity 139, member B pseudo FAM115D family with sequence similarity 115, member D (pseudogene) O - 20121230 -9606 653698 LOC653698 - - - 11 11p11.12 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 pseudogene pseudo - - - - 20121230 -9606 653702 RPL7P9 RP11-122C9.1 RPL7_3_75 HGNC:37028 1 1p21.3 ribosomal protein L7 pseudogene 9 pseudo RPL7P9 ribosomal protein L7 pseudogene 9 O - 20121230 -9606 653707 LOC653707 - - - X Xp22.11 phosducin-like 2 pseudogene pseudo - - - - 20121230 -9606 653712 LOC653712 - - - 3 3q21.3 intraflagellar transport 122 homolog (Chlamydomonas) pseudogene pseudo - - - - 20121230 -9606 653720 GOLGA8M - - HGNC:44404|Ensembl:ENSG00000188626|Vega:OTTHUMG00000176338 15 15q13.1 golgin A8 family, member M protein-coding GOLGA8M golgin A8 family, member M O Putative golgin subfamily A member 6-like protein 7 20121230 -9606 653737 RPL21P119 - RPL21_56_1471 HGNC:35614 16 16p13.2 ribosomal protein L21 pseudogene 119 pseudo RPL21P119 ribosomal protein L21 pseudogene 119 O - 20121230 -9606 653739 LOC653739 - - - 7 7q33 uncharacterized LOC653739 unknown - - - - 20121230 -9606 653753 VN1R6P - VNR19I2|ZVNH2|ZVNR2 HGNC:13712 19 19q13.42 vomeronasal 1 receptor 6 pseudogene pseudo VN1R6P vomeronasal 1 receptor 6 pseudogene O - 20121230 -9606 653758 TPM3P6 - - HGNC:39169 19 19q13.42 tropomyosin 3 pseudogene 6 pseudo TPM3P6 tropomyosin 3 pseudogene 6 O - 20121230 -9606 653773 RPL31P17 - RPL31_4_330 HGNC:36995 2 2q36.1 ribosomal protein L31 pseudogene 17 pseudo RPL31P17 ribosomal protein L31 pseudogene 17 O - 20121230 -9606 653781 POTEJ - POTE2beta HGNC:37094|Ensembl:ENSG00000222038|Vega:OTTHUMG00000154050 2 2q21.1 POTE ankyrin domain family, member J protein-coding POTEJ POTE ankyrin domain family, member J O - 20121230 -9606 653784 MZT2A - FAM128A|MOZART2A HGNC:33187|MIM:613449|Ensembl:ENSG00000173272|Vega:OTTHUMG00000153606 2 2q21.1 mitotic spindle organizing protein 2A protein-coding MZT2A mitotic spindle organizing protein 2A O family with sequence similarity 128, member A|mitotic-spindle organizing protein 2A|mitotic-spindle organizing protein associated with a ring of gamma-tubulin 2A 20121230 -9606 653786 LOC653786 - - - 16 16p12.2 otoancorin pseudogene pseudo - - - - 20121230 -9606 653789 RPL23AP25 - RPL23A_7_192 HGNC:35672 1 1q44 ribosomal protein L23a pseudogene 25 pseudo RPL23AP25 ribosomal protein L23a pseudogene 25 O - 20121230 -9606 653794 TRIM60P14 - - HGNC:38486 4 4q32.3 tripartite motif containing 60 pseudogene 14 pseudo TRIM60P14 tripartite motif containing 60 pseudogene 14 O - 20121230 -9606 653805 RPS27P8 - RPS27_1_148 HGNC:36022 1 1q32.1 ribosomal protein S27 pseudogene 8 pseudo RPS27P8 ribosomal protein S27 pseudogene 8 O - 20121230 -9606 653808 ZG16 hCG_1641409 JCLN|JCLN1|ZG16A HGNC:30961|Ensembl:ENSG00000174992|Vega:OTTHUMG00000177139 16 16p11.2 zymogen granule protein 16 protein-coding ZG16 zymogen granule protein 16 O jacalin-like lectin domain containing|secretory lectin ZG16|zymogen granule membrane protein 16|zymogen granule protein 16 homolog 20121230 -9606 653809 FAM74A5 - - HGNC:34035 9 9p13.1 family with sequence similarity 74, member A5 pseudo FAM74A5 family with sequence similarity 74, member A5 O - 20121209 -9606 653820 FAM72B RP11-439A17.6 p17 HGNC:24805|MIM:614711|Ensembl:ENSG00000188610|Vega:OTTHUMG00000040902 1 1p11.2 family with sequence similarity 72, member B protein-coding FAM72B family with sequence similarity 72, member B O amyloid-beta peptide-induced protein p17|protein FAM72B 20121230 -9606 653857 ACTR3C - ARP11 HGNC:37282|Ensembl:ENSG00000106526|Vega:OTTHUMG00000158323 7 7q36.1 ARP3 actin-related protein 3 homolog C (yeast) protein-coding ACTR3C ARP3 actin-related protein 3 homolog C (yeast) O actin-related Arp11|actin-related protein 11|actin-related protein 3C 20121230 -9606 653895 LOC653895 - - - 10 10q11.23 geranylgeranyl transferase type-1 subunit beta-like pseudo - - - - 20121230 -9606 653924 LOC653924 - - - 2 2q11.2 glycerol-3-phosphate acyltransferase 2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 654029 RPS10P15 - RPS10_3_844 HGNC:35860 7 7q32.1 ribosomal protein S10 pseudogene 15 pseudo RPS10P15 ribosomal protein S10 pseudogene 15 O - 20121230 -9606 654170 RPS16P8 - RPS16_4_1529 HGNC:35608 17 17q11.1 ribosomal protein S16 pseudogene 8 pseudo RPS16P8 ribosomal protein S16 pseudogene 8 O - 20121230 -9606 654231 OCM hCG_18255 OCM1|OM|ONCM HGNC:8105|MIM:164795|Ensembl:ENSG00000122543|Vega:OTTHUMG00000155499 7 7p22.1 oncomodulin protein-coding OCM oncomodulin O hCG18255|oncomodulin 1|oncomodulin-1|parvalbumin beta 20121230 -9606 654254 ZNF732 hCG_1771830 - HGNC:37138 4 4p16.3 zinc finger protein 732 protein-coding ZNF732 zinc finger protein 732 O zinc finger protein LOC654254 20121230 -9606 654319 SNORA5A - ACA5|ACA5A/B/C HGNC:32588 7 7p13 small nucleolar RNA, H/ACA box 5A snoRNA SNORA5A small nucleolar RNA, H/ACA box 5A O - 20121230 -9606 654320 SNORA8 - ACA8 HGNC:32596 11 11q21 small nucleolar RNA, H/ACA box 8 snoRNA SNORA8 small nucleolar RNA, H/ACA box 8 O - 20121230 -9606 654321 SNORA75 - U23 HGNC:32661 2 2q37.1 small nucleolar RNA, H/ACA box 75 snoRNA SNORA75 small nucleolar RNA, H/ACA box 75 O - 20121230 -9606 654322 SNORA13 - ACA13 HGNC:32601 5 5q22.2 small nucleolar RNA, H/ACA box 13 snoRNA SNORA13 small nucleolar RNA, H/ACA box 13 O - 20121230 -9606 654337 BCYRN1P3 - - HGNC:39833 13 13q11 brain cytoplasmic RNA 1, pseudogene 3 pseudo BCYRN1P3 brain cytoplasmic RNA 1, pseudogene 3 O - 20121230 -9606 654338 LOC654338 - - - 21 21q11.2 brain cytoplasmic RNA 1 (non-protein coding) pseudogene pseudo - - - - 20121230 -9606 654340 LOC654340 - - - 3 3p13 RNA-binding region (RNP1, RRM) containing 3 pseudogene pseudo - - - - 20121230 -9606 654341 TBC1D3G - - HGNC:29860|MIM:610810|Ensembl:ENSG00000161583|Vega:OTTHUMG00000132711 17 17q12 TBC1 domain family, member 3G protein-coding TBC1D3G TBC1 domain family, member 3G O TBC1 domain family member 3G 20121230 -9606 654342 LOC654342 - - - 2 2p11.1 lymphocyte-specific protein 1 pseudogene pseudo - - - - 20121230 -9606 654346 LGALS9C - - HGNC:33874|Ensembl:ENSG00000171916|Vega:OTTHUMG00000059251 17 17p11.2 lectin, galactoside-binding, soluble, 9C protein-coding LGALS9C lectin, galactoside-binding, soluble, 9C O gal-9C|galectin 9 like|galectin-9-like protein B|galectin-9C|lectin, galactoside-binding, soluble, 9 (galectin 9) pseudogene 20121230 -9606 654348 PRAMEF16 RP11-219C24.2 - HGNC:25767|Ensembl:ENSG00000204488|Vega:OTTHUMG00000002933 1 1p36.21 PRAME family member 16 protein-coding PRAMEF16 PRAME family member 16 O - 20121216 -9606 654350 RPL9P25 - RPL9_13_1445 HGNC:36112 15 15q22.31 ribosomal protein L9 pseudogene 25 pseudo RPL9P25 ribosomal protein L9 pseudogene 25 O - 20121230 -9606 654364 NME1-NME2 hCG_2001850 NM23-LV|NMELV HGNC:33531|Ensembl:ENSG00000011052|Vega:OTTHUMG00000137475 17 17q21.3 NME1-NME2 readthrough protein-coding NME1-NME2 NME1-NME2 readthrough O NME1-NME2 protein|NME1-NME2 readthrough transcript 20121230 -9606 654365 RPS27P3 HC13216 RPS27_8_1194 HGNC:17445 12 12p13.32 ribosomal protein S27 pseudogene 3 pseudo RPS27P3 ribosomal protein S27 pseudogene 3 O - 20121230 -9606 654369 RPL37P5 - RPL37_12_1377 HGNC:23549 14 14q23.1 ribosomal protein L37 pseudogene 5 pseudo RPL37P5 ribosomal protein L37 pseudogene 5 O - 20121230 -9606 654370 RPL7AP3 - - HGNC:23553 14 14q13.2 ribosomal protein L7a pseudogene 3 pseudo RPL7AP3 ribosomal protein L7a pseudogene 3 O - 20121230 -9606 654371 RPS15AP4 - RPS15A_20_1378 HGNC:23559 14 14q23.1 ribosomal protein S15a pseudogene 4 pseudo RPS15AP4 ribosomal protein S15a pseudogene 4 O - 20121230 -9606 654376 RPL12P9 - RPL12_18_1725 HGNC:23766 21 21q21.3 ribosomal protein L12 pseudogene 9 pseudo RPL12P9 ribosomal protein L12 pseudogene 9 O - 20121230 -9606 654377 CHES1L1 - C18orf7 HGNC:23778 18 18q21.32 checkpoint suppressor 1-like 1 protein-coding CHES1L1 checkpoint suppressor 1-like 1 O - 20120318 -9606 654381 RPL7P5 - RPL7_18_1464 HGNC:28886 15 15q26.3 ribosomal protein L7 pseudogene 5 pseudo RPL7P5 ribosomal protein L7 pseudogene 5 O - 20121230 -9606 654382 RPL19P2 - RPL19_3_373 HGNC:29946 3 3p14.3 ribosomal protein L19 pseudogene 2 pseudo RPL19P2 ribosomal protein L19 pseudogene 2 O - 20121230 -9606 654383 RPL13P4 - HsT16723|RPL13_6_1454 HGNC:31027 15 15q24.2 ribosomal protein L13 pseudogene 4 pseudo RPL13P4 ribosomal protein L13 pseudogene 4 O - 20121230 -9606 654385 RPL21P15 - HsT18206|RPL21_54_1444 HGNC:31030 15 15q22.31 ribosomal protein L21 pseudogene 15 pseudo RPL21P15 ribosomal protein L21 pseudogene 15 O - 20121230 -9606 654386 RPL26P5 - HsT41398 HGNC:31031 15 15q26.2 ribosomal protein L26 pseudogene 5 pseudo RPL26P5 ribosomal protein L26 pseudogene 5 O - 20121230 -9606 654387 RPL31P6 - HsT19508|RPL31_30_1462 HGNC:31032 15 15q26.1 ribosomal protein L31 pseudogene 6 pseudo RPL31P6 ribosomal protein L31 pseudogene 6 O - 20121230 -9606 654388 RPL32P2 - HsT20607|RPL32_9_1423 HGNC:31033 15 15q14 ribosomal protein L32 pseudogene 2 pseudo RPL32P2 ribosomal protein L32 pseudogene 2 O - 20121230 -9606 654390 RPS27P2 - HsT16324|RPS27_11_1420 HGNC:31035 15 15q11.2 ribosomal protein S27 pseudogene 2 pseudo RPS27P2 ribosomal protein S27 pseudogene 2 O - 20121230 -9606 654391 RPL31P7 - RPL31_22_1578 HGNC:31325 17 17q25.3 ribosomal protein L31 pseudogene 7 pseudo RPL31P7 ribosomal protein L31 pseudogene 7 O - 20121230 -9606 654392 RPL39P4 - RPL39_18_1545 HGNC:31327 17 17q21.1 ribosomal protein L39 pseudogene 4 pseudo RPL39P4 ribosomal protein L39 pseudogene 4 O - 20121230 -9606 654412 FAM138B - F379|bA395L14.6 HGNC:33582 2 2q14.1 family with sequence similarity 138, member B miscRNA FAM138B family with sequence similarity 138, member B O - 20121230 -9606 654427 PCNPP1 - PCNPP HGNC:32440 12 12q24.12 PEST containing nuclear protein pseudogene 1 pseudo PCNPP1 PEST containing nuclear protein pseudogene 1 O - 20121230 -9606 654429 LRTM2 - - HGNC:32443|Ensembl:ENSG00000166159|Vega:OTTHUMG00000168088 12 12p13.33 leucine-rich repeats and transmembrane domains 2 protein-coding LRTM2 leucine-rich repeats and transmembrane domains 2 O leucine-rich repeat and transmembrane domain-containing protein 2 20121230 -9606 654433 LOC654433 - - - 2 2q13 uncharacterized LOC654433 miscRNA - - - - 20121230 -9606 654434 LINC00338 PRO0872 C17orf86|NCRNA00338 HGNC:33099 17 17q25.2 long intergenic non-protein coding RNA 338 miscRNA LINC00338 long intergenic non-protein coding RNA 338 O - 20121230 -9606 654463 FER1L6 - C8ORFK23 HGNC:28065|Ensembl:ENSG00000214814|Vega:OTTHUMG00000164998 8 8q24.1 fer-1-like 6 (C. elegans) protein-coding FER1L6 fer-1-like 6 (C. elegans) O fer-1-like protein 6 20121230 -9606 654466 KGFLP2 - - - 9 9p12 keratinocyte growth factor-like protein 2 pseudo - - - - 20121230 -9606 654480 ATP5G2P4 - - HGNC:42188 X Xp11.4 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 4 pseudo ATP5G2P4 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 4 O - 20121230 -9606 654483 BOLA2B My016 BOLA2 HGNC:32479|Ensembl:ENSG00000169627|Vega:OTTHUMG00000176858 16 16p11.2 bolA homolog 2B (E. coli) protein-coding BOLA2B bolA homolog 2B (E. coli) O BolA-like protein 2 member B|bolA-like 2B|bolA-like protein 2|bolA-like protein 2B 20121230 -9606 654484 ATP5J2P5 - - HGNC:33611 12 12p13.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 5 pseudo ATP5J2P5 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 5 O - 20121230 -9606 654485 ATP5J2P4 - - HGNC:32451 17 17q ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 4 pseudo ATP5J2P4 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 4 O - 20121230 -9606 654486 ATP5J2P6 - - HGNC:33612 15 15q22 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 6 pseudo ATP5J2P6 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 6 O - 20121230 -9606 654499 KIAA0125P2 - FAM30C|HsT16041 HGNC:31024 15 15q11.2 KIAA0125 pseudogene 2 unknown KIAA0125P2 KIAA0125 pseudogene 2 O - 20121021 -9606 654500 H2AFVP1 - H2AFVP|HsT19970 HGNC:31026 15 15q26.1 H2A histone family, member V, pseudogene 1 pseudo H2AFVP1 H2A histone family, member V, pseudogene 1 O - 20121230 -9606 654502 IQCJ - - HGNC:32406|MIM:611622|Ensembl:ENSG00000214216|Ensembl:ENSG00000250588|Vega:OTTHUMG00000162426|Vega:OTTHUMG00000166440 3 3q25.32 IQ motif containing J protein-coding IQCJ IQ motif containing J O IQ domain-containing protein J|calmodulin binding protein 20121230 -9606 654503 HMGB1P9 - HMG1L9|HMGB1L9 HGNC:13320 2 2q35 high mobility group box 1 pseudogene 9 pseudo HMGB1P9 high mobility group box 1 pseudogene 9 O - 20121230 -9606 654504 FAM30B - HsT16028 HGNC:31023 15 15q11.2 family with sequence similarity 30, member B unknown FAM30B family with sequence similarity 30, member B O - 20120318 -9606 654505 H3F3AP1 - HsT18159 HGNC:31028 15 15q15.1 H3 histone, family 3A pseudogene 1 pseudo H3F3AP1 H3 histone, family 3A pseudogene 1 O - 20121230 -9606 654506 RPSAP7 - LAMR1P7|RPSA_16_1024 HGNC:31461 10 10p13 ribosomal protein SA pseudogene 7 pseudo RPSAP7 ribosomal protein SA pseudogene 7 O - 20121230 -9606 654780 LOC654780 - - - 16 16q24.1 SFPQ unknown - - - - 20121230 -9606 654783 IFNNP1 - - HGNC:32009 9 9p21.3 interferon, nu 1, pseudogene pseudo IFNNP1 interferon, nu 1, pseudogene O - 20121230 -9606 654790 PCP4L1 - IQM1 HGNC:20448|Ensembl:ENSG00000248485|Vega:OTTHUMG00000034340 1 1q23.3 Purkinje cell protein 4 like 1 protein-coding PCP4L1 Purkinje cell protein 4 like 1 O PCP4-like protein 1|Purkinje cell protein 4-like protein 1 20121230 -9606 654813 P2RY10P1 - GPR121P|P2Y10P1 HGNC:19063 X Xq21.1 purinergic receptor P2Y, G-protein coupled, 10 pseudogene 1 pseudo P2RY10P1 purinergic receptor P2Y, G-protein coupled, 10 pseudogene 1 O - 20120318 -9606 654816 NCF1B - NCF-1B|SH3PXD1B HGNC:32522 7 7q11.23 neutrophil cytosolic factor 1B pseudogene pseudo NCF1B neutrophil cytosolic factor 1B pseudogene O - 20121230 -9606 654817 NCF1C - SH3PXD1C HGNC:32523|HPRD:01990 7 7q11.23 neutrophil cytosolic factor 1C pseudogene pseudo NCF1C neutrophil cytosolic factor 1C pseudogene O - 20121230 -9606 654835 FAM138C RP11-143M1.1 F379 HGNC:32333 9 9p24.3 family with sequence similarity 138, member C miscRNA FAM138C family with sequence similarity 138, member C O - 20121216 -9606 654841 LOC654841 - - - 2 2q36-q37 uncharacterized LOC654841 unknown - - - - 20121230 -9606 664611 H3F3AP2 - H3F3CP HGNC:19823 14 14q11.2 H3 histone, family 3A pseudogene 2 pseudo H3F3AP2 H3 histone, family 3A pseudogene 2 O - 20121230 -9606 664612 MIR539 - MIRN539|hsa-mir-539 HGNC:32529|miRBase:MI0003514 14 14q32.31 microRNA 539 miscRNA MIR539 microRNA 539 O - 20121230 -9606 664613 MIR544A - MIR544|MIRN544|hsa-mir-544|hsa-mir-544a HGNC:32530|miRBase:MI0003515 14 - microRNA 544a miscRNA MIR544A microRNA 544a O - 20121230 -9606 664614 MIR545 - MIRN545|hsa-mir-545 HGNC:32531|miRBase:MI0003516 X - microRNA 545 miscRNA MIR545 microRNA 545 O - 20121230 -9606 664615 MIR376A2 - MIR376A-2|MIRN376A-2|MIRN376A2 HGNC:32532|MIM:610960|miRBase:MI0003529 14 14q32.31 microRNA 376a-2 miscRNA MIR376A2 microRNA 376a-2 O - 20121230 -9606 664616 MIR487B - MIRN487B HGNC:32533|miRBase:MI0003530 14 14q32.31 microRNA 487b miscRNA MIR487B microRNA 487b O - 20121230 -9606 664617 MIR542 - MIRN542|hsa-mir-542 HGNC:32534|miRBase:MI0003686 X Xq26.3 microRNA 542 miscRNA MIR542 microRNA 542 O - 20121230 -9606 664618 HSP90AB4P - HSP90Bd HGNC:32538 15 15q22.1 heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene pseudo HSP90AB4P heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene O - 20121230 -9606 664629 LOC664629 - - - - - unknown transcript unknown - - - - 20120508 -9606 664701 ZNF826P - ZNF826 HGNC:33875 19 19p12 zinc finger protein 826, pseudogene pseudo ZNF826P zinc finger protein 826, pseudogene O - 20121211 -9606 664709 HNRNPA1P10 - HNRPA1L-2 HGNC:39128 19 19p13.2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo HNRNPA1P10 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 O - 20121230 -9606 664721 HNRNPA1P27 - HNRPA1P5 HGNC:39545 X Xq22 heterogeneous nuclear ribonucleoprotein A1 pseudogene 27 pseudo HNRNPA1P27 heterogeneous nuclear ribonucleoprotein A1 pseudogene 27 O - 20121230 -9606 664722 HNRNPA1P26 - HNRPA1P6 HGNC:39544 X Xq22 heterogeneous nuclear ribonucleoprotein A1 pseudogene 26 pseudo HNRNPA1P26 heterogeneous nuclear ribonucleoprotein A1 pseudogene 26 O - 20121230 -9606 664728 CMD1Q - - HGNC:32552|MIM:609915 7 7q22.3-q31.1 cardiomyopathy, dilated 1Q (autosomal dominant) unknown CMD1Q cardiomyopathy, dilated 1Q (autosomal dominant) O - 20120622 -9606 664780 MYP12 - - HGNC:32551|MIM:609995 2 2q37.1 myopia 12 (high grade, autosomal dominant) unknown MYP12 myopia 12 (high grade, autosomal dominant) O - 20120622 -9606 677662 PARK12 - - HGNC:34510|MIM:300557 X Xq21-q25 Parkinson disease 12 (susceptibility) unknown PARK12 Parkinson disease 12 (susceptibility) O - 20120622 -9606 677663 PAND3 - - MIM:609985 4 4q31-q34 panic disorder 3 unknown - - - - 20120622 -9606 677679 SCARNA3 - HBI-100 HGNC:32577 1 1q25.1 small Cajal body-specific RNA 3 miscRNA SCARNA3 small Cajal body-specific RNA 3 O - 20121230 -9606 677681 SCARNA20 - ACA66 HGNC:32578 17 17q23.2 small Cajal body-specific RNA 20 miscRNA SCARNA20 small Cajal body-specific RNA 20 O - 20121230 -9606 677739 LINC00108 LL0YNC03-29C1.1 CXYorf11|NCRNA00108 HGNC:31847 X|Y Xp22.33;Yp11.32 long intergenic non-protein coding RNA 108 pseudo LINC00108 long intergenic non-protein coding RNA 108 O - 20121230 -9606 677759 LOC677759 - - - 10 10q23.2 uncharacterized LOC677759 unknown - - - - 20121017 -9606 677762 LOC677762 - - - 3 3q25.1 Sin3A-associated protein, 30kDa pseudogene pseudo - - - - 20121230 -9606 677763 SCARNA21 - ACA68 HGNC:32579 17 17p13.1 small Cajal body-specific RNA 21 miscRNA SCARNA21 small Cajal body-specific RNA 21 O - 20121230 -9606 677764 MYP13 - - HGNC:32582|MIM:300613 X Xq23-q25 myopia 13 unknown MYP13 myopia 13 O - 20120622 -9606 677765 SCARNA18 - U109 HGNC:32559|MIM:611329 5 5q14.2 small Cajal body-specific RNA 18 miscRNA SCARNA18 small Cajal body-specific RNA 18 O - 20121230 -9606 677766 SCARNA2 - HBII-382|mgU2-25/61 HGNC:32558 1 1q13.1 small Cajal body-specific RNA 2 miscRNA SCARNA2 small Cajal body-specific RNA 2 O - 20121230 -9606 677767 SCARNA7 - U90 HGNC:32563 3 3q25.22 small Cajal body-specific RNA 7 miscRNA SCARNA7 small Cajal body-specific RNA 7 O - 20121230 -9606 677768 SCARNA13 - U93 HGNC:32570 14 14q32.12 small Cajal body-specific RNA 13 miscRNA SCARNA13 small Cajal body-specific RNA 13 O - 20121230 -9606 677769 SCARNA17 - U91 HGNC:32574 18 18q21.1 small Cajal body-specific RNA 17 miscRNA SCARNA17 small Cajal body-specific RNA 17 O - 20121230 -9606 677770 SCARNA22 - ACA11 HGNC:32580 4 4p16.3 small Cajal body-specific RNA 22 miscRNA SCARNA22 small Cajal body-specific RNA 22 O - 20121230 -9606 677771 SCARNA4 - ACA26 HGNC:32560 1 1q22 small Cajal body-specific RNA 4 miscRNA SCARNA4 small Cajal body-specific RNA 4 O - 20121230 -9606 677772 SCARNA6 - U88 HGNC:32562 2 2q37.1 small Cajal body-specific RNA 6 miscRNA SCARNA6 small Cajal body-specific RNA 6 O - 20121230 -9606 677773 SCARNA23 - ACA12 HGNC:32581 X Xp22.11 small Cajal body-specific RNA 23 miscRNA SCARNA23 small Cajal body-specific RNA 23 O - 20121230 -9606 677774 SCARNA1 - ACA35 HGNC:32555 1 1p35.3 small Cajal body-specific RNA 1 miscRNA SCARNA1 small Cajal body-specific RNA 1 O - 20121230 -9606 677775 SCARNA5 - U87 HGNC:32561 2 2q37.1 small Cajal body-specific RNA 5 miscRNA SCARNA5 small Cajal body-specific RNA 5 O - 20121230 -9606 677776 SCARNA8 - U92 HGNC:32564 9 9p22.1 small Cajal body-specific RNA 8 miscRNA SCARNA8 small Cajal body-specific RNA 8 O - 20121230 -9606 677777 SCARNA12 - U89 HGNC:32569 12 12p13.31 small Cajal body-specific RNA 12 miscRNA SCARNA12 small Cajal body-specific RNA 12 O - 20121230 -9606 677778 SCARNA15 - ACA45 HGNC:32572|MIM:612675 15 15q25.2 small Cajal body-specific RNA 15 miscRNA SCARNA15 small Cajal body-specific RNA 15 O - 20121230 -9606 677779 LINC00488 - C3orf66 HGNC:32675 3 3q13.13 long intergenic non-protein coding RNA 488 miscRNA LINC00488 long intergenic non-protein coding RNA 488 O - 20121230 -9606 677780 SCARNA11 - ACA57 HGNC:32568 12 12p13.31 small Cajal body-specific RNA 11 miscRNA SCARNA11 small Cajal body-specific RNA 11 O - 20121230 -9606 677781 SCARNA16 - ACA47 HGNC:32573 17 17q25.2 small Cajal body-specific RNA 16 miscRNA SCARNA16 small Cajal body-specific RNA 16 O - 20121230 -9606 677784 FAM138D - F379 HGNC:33583 12 12p13.33 family with sequence similarity 138, member D miscRNA FAM138D family with sequence similarity 138, member D O - 20121230 -9606 677790 TMEM78 - - HGNC:32307 1 1q42.13 transmembrane protein 78 unknown TMEM78 transmembrane protein 78 O - 20121021 -9606 677792 SNORA1 - ACA1 HGNC:32557 11 11q21 small nucleolar RNA, H/ACA box 1 snoRNA SNORA1 small nucleolar RNA, H/ACA box 1 O - 20121230 -9606 677793 SNORA2A - ACA2A HGNC:32584 12 12q13.11 small nucleolar RNA, H/ACA box 2A snoRNA SNORA2A small nucleolar RNA, H/ACA box 2A O - 20121230 -9606 677794 SNORA2B - ACA2b HGNC:32585 12 12q13.11 small nucleolar RNA, H/ACA box 2B snoRNA SNORA2B small nucleolar RNA, H/ACA box 2B O - 20121230 -9606 677795 SNORA5B - ACA5b HGNC:32589 7 7p13 small nucleolar RNA, H/ACA box 5B snoRNA SNORA5B small nucleolar RNA, H/ACA box 5B O - 20121230 -9606 677796 SNORA5C - ACA5c HGNC:32590|MIM:611335 7 7p13 small nucleolar RNA, H/ACA box 5C snoRNA SNORA5C small nucleolar RNA, H/ACA box 5C O - 20121230 -9606 677797 SNORA7B - ACA7B HGNC:32593 3 3q21.3 small nucleolar RNA, H/ACA box 7B snoRNA SNORA7B small nucleolar RNA, H/ACA box 7B O - 20121230 -9606 677798 SNORA9 - ACA9 HGNC:32597 7 7p13 small nucleolar RNA, H/ACA box 9 snoRNA SNORA9 small nucleolar RNA, H/ACA box 9 O - 20121230 -9606 677799 SNORA11 - SNORA11A|U107 HGNC:32599|MIM:300662 X Xp11.21 small nucleolar RNA, H/ACA box 11 snoRNA SNORA11 small nucleolar RNA, H/ACA box 11 O - 20121230 -9606 677800 SNORA12 - U108 HGNC:32600|MIM:611330 10 10q24.31 small nucleolar RNA, H/ACA box 12 snoRNA SNORA12 small nucleolar RNA, H/ACA box 12 O - 20121230 -9606 677801 SNORA14A - ACA14a HGNC:32602 7 7q11.23 small nucleolar RNA, H/ACA box 14A snoRNA SNORA14A small nucleolar RNA, H/ACA box 14A O - 20121230 -9606 677802 SNORA14B - ACA14b HGNC:32603 1 1q42.3 small nucleolar RNA, H/ACA box 14B snoRNA SNORA14B small nucleolar RNA, H/ACA box 14B O - 20121230 -9606 677803 SNORA15 - ACA15 HGNC:32604 7 7p11.2 small nucleolar RNA, H/ACA box 15 snoRNA SNORA15 small nucleolar RNA, H/ACA box 15 O - 20121230 -9606 677804 SNORA17 - ACA17 HGNC:32607 9 9q34.3 small nucleolar RNA, H/ACA box 17 snoRNA SNORA17 small nucleolar RNA, H/ACA box 17 O - 20121230 -9606 677805 SNORA18 - ACA18 HGNC:32608 11 11q21 small nucleolar RNA, H/ACA box 18 snoRNA SNORA18 small nucleolar RNA, H/ACA box 18 O - 20121230 -9606 677806 SNORA20 - ACA20 HGNC:32610 6 6q25.3 small nucleolar RNA, H/ACA box 20 snoRNA SNORA20 small nucleolar RNA, H/ACA box 20 O - 20121230 -9606 677807 SNORA22 - ACA22 HGNC:32612 7 7q11.21 small nucleolar RNA, H/ACA box 22 snoRNA SNORA22 small nucleolar RNA, H/ACA box 22 O - 20121230 -9606 677808 SNORA23 - ACA23 HGNC:32613 11 11p15.4 small nucleolar RNA, H/ACA box 23 snoRNA SNORA23 small nucleolar RNA, H/ACA box 23 O - 20121230 -9606 677809 SNORA24 - ACA24 HGNC:32614 4 4q26 small nucleolar RNA, H/ACA box 24 snoRNA SNORA24 small nucleolar RNA, H/ACA box 24 O - 20121230 -9606 677810 SNORA26 - HBI-6 HGNC:32616|MIM:614626 4 4q12 small nucleolar RNA, H/ACA box 26 snoRNA SNORA26 small nucleolar RNA, H/ACA box 26 O - 20121230 -9606 677811 SNORA28 - ACA28 HGNC:32618 14 14q32.32 small nucleolar RNA, H/ACA box 28 snoRNA SNORA28 small nucleolar RNA, H/ACA box 28 O - 20121230 -9606 677812 SNORA29 - ACA29 HGNC:32619 6 6q25.3 small nucleolar RNA, H/ACA box 29 snoRNA SNORA29 small nucleolar RNA, H/ACA box 29 O - 20121230 -9606 677813 SNORA30 - ACA30 HGNC:32620 16 16p11.2 small nucleolar RNA, H/ACA box 30 snoRNA SNORA30 small nucleolar RNA, H/ACA box 30 O - 20121230 -9606 677814 SNORA31 - ACA31 HGNC:32621 13 13q14.13 small nucleolar RNA, H/ACA box 31 snoRNA SNORA31 small nucleolar RNA, H/ACA box 31 O - 20121230 -9606 677815 SNORA34 - ACA34 HGNC:32624 12 12q13.11 small nucleolar RNA, H/ACA box 34 snoRNA SNORA34 small nucleolar RNA, H/ACA box 34 O - 20121230 -9606 677816 SNORA35 - HBI-36 HGNC:32625 X Xq23 small nucleolar RNA, H/ACA box 35 snoRNA SNORA35 small nucleolar RNA, H/ACA box 35 O - 20121230 -9606 677817 SNORA36A - ACA36 HGNC:32628 X Xq28 small nucleolar RNA, H/ACA box 36A snoRNA SNORA36A small nucleolar RNA, H/ACA box 36A O - 20121230 -9606 677818 SNORA36B - ACA36b HGNC:32629 1 1q41 small nucleolar RNA, H/ACA box 36B snoRNA SNORA36B small nucleolar RNA, H/ACA box 36B O - 20121230 -9606 677819 SNORA37 - ACA37 HGNC:32630 18 18q21.2 small nucleolar RNA, H/ACA box 37 snoRNA SNORA37 small nucleolar RNA, H/ACA box 37 O - 20121230 -9606 677820 SNORA38 - ACA38 HGNC:32631 6 6p21.33 small nucleolar RNA, H/ACA box 38 snoRNA SNORA38 small nucleolar RNA, H/ACA box 38 O - 20121230 -9606 677821 SNORA39 - ACA39 HGNC:32632 20 20q11.23 small nucleolar RNA, H/ACA box 39 snoRNA SNORA39 small nucleolar RNA, H/ACA box 39 O - 20121230 -9606 677822 SNORA40 - ACA40 HGNC:32633 11 11q21 small nucleolar RNA, H/ACA box 40 snoRNA SNORA40 small nucleolar RNA, H/ACA box 40 O - 20121230 -9606 677823 SNORA42 - ACA42 HGNC:32635 1 1q22 small nucleolar RNA, H/ACA box 42 snoRNA SNORA42 small nucleolar RNA, H/ACA box 42 O - 20121230 -9606 677824 SNORA43 - ACA43 HGNC:32636 9 9q34.3 small nucleolar RNA, H/ACA box 43 snoRNA SNORA43 small nucleolar RNA, H/ACA box 43 O - 20121230 -9606 677825 SNORA44 - ACA44 HGNC:32637 1 1p35.3 small nucleolar RNA, H/ACA box 44 snoRNA SNORA44 small nucleolar RNA, H/ACA box 44 O - 20121230 -9606 677826 SNORA45 - ACA3-2 HGNC:32638|MIM:611333 11 11p15.4 small nucleolar RNA, H/ACA box 45 snoRNA SNORA45 small nucleolar RNA, H/ACA box 45 O - 20121230 -9606 677827 SNORA46 - ACA46 HGNC:32639 16 16q21 small nucleolar RNA, H/ACA box 46 snoRNA SNORA46 small nucleolar RNA, H/ACA box 46 O - 20121230 -9606 677828 SNORA47 - HBI-115 HGNC:32640 5 5q13.3 small nucleolar RNA, H/ACA box 47 snoRNA SNORA47 small nucleolar RNA, H/ACA box 47 O - 20121230 -9606 677829 SNORA49 - ACA49 HGNC:32642 12 12q24.33 small nucleolar RNA, H/ACA box 49 snoRNA SNORA49 small nucleolar RNA, H/ACA box 49 O - 20121230 -9606 677830 SNORA50 - ACA50 HGNC:32643 16 16q21 small nucleolar RNA, H/ACA box 50 snoRNA SNORA50 small nucleolar RNA, H/ACA box 50 O - 20121230 -9606 677831 SNORA51 - ACA51 HGNC:32644 20 20p13 small nucleolar RNA, H/ACA box 51 snoRNA SNORA51 small nucleolar RNA, H/ACA box 51 O - 20121230 -9606 677832 SNORA53 - ACA53 HGNC:32646 12 12q23.1 small nucleolar RNA, H/ACA box 53 snoRNA SNORA53 small nucleolar RNA, H/ACA box 53 O - 20121230 -9606 677833 SNORA54 - ACA54 HGNC:32647 11 11p15.4 small nucleolar RNA, H/ACA box 54 snoRNA SNORA54 small nucleolar RNA, H/ACA box 54 O - 20121230 -9606 677834 SNORA55 - ACA55 HGNC:32649 1 1p34.3 small nucleolar RNA, H/ACA box 55 snoRNA SNORA55 small nucleolar RNA, H/ACA box 55 O - 20121230 -9606 677835 SNORA56 - ACA56 HGNC:32650 X Xq28 small nucleolar RNA, H/ACA box 56 snoRNA SNORA56 small nucleolar RNA, H/ACA box 56 O - 20121230 -9606 677836 SNORA58 - ACA58 HGNC:32652 3 3q21.2 small nucleolar RNA, H/ACA box 58 snoRNA SNORA58 small nucleolar RNA, H/ACA box 58 O - 20121230 -9606 677837 SNORA60 - ACA60 HGNC:32654 20 20q11.23 small nucleolar RNA, H/ACA box 60 snoRNA SNORA60 small nucleolar RNA, H/ACA box 60 O - 20121230 -9606 677838 SNORA61 - ACA61 HGNC:32655 1 1p35.3 small nucleolar RNA, H/ACA box 61 snoRNA SNORA61 small nucleolar RNA, H/ACA box 61 O - 20121230 -9606 677839 SNORA71C - U71c HGNC:32656 20 20q11.23 small nucleolar RNA, H/ACA box 71C snoRNA SNORA71C small nucleolar RNA, H/ACA box 71C O - 20121230 -9606 677840 SNORA71D - U71d HGNC:32657 20 20q11.23 small nucleolar RNA, H/ACA box 71D snoRNA SNORA71D small nucleolar RNA, H/ACA box 71D O - 20121230 -9606 677841 SNORA74B - U19-2 HGNC:32660|MIM:611331 5 5q35.1 small nucleolar RNA, H/ACA box 74B snoRNA SNORA74B small nucleolar RNA, H/ACA box 74B O - 20121230 -9606 677842 SNORA76 - ACA62 HGNC:32662 17 17q23.3 small nucleolar RNA, H/ACA box 76 snoRNA SNORA76 small nucleolar RNA, H/ACA box 76 O - 20121230 -9606 677843 SNORA77 - ACA63 HGNC:32663 1 1q32.1 small nucleolar RNA, H/ACA box 77 snoRNA SNORA77 small nucleolar RNA, H/ACA box 77 O - 20121230 -9606 677844 SNORA78 - ACA64 HGNC:32664 16 16p13.3 small nucleolar RNA, H/ACA box 78 snoRNA SNORA78 small nucleolar RNA, H/ACA box 78 O - 20121230 -9606 677845 SNORA79 - ACA65 HGNC:32665 14 14q31.1 small nucleolar RNA, H/ACA box 79 snoRNA SNORA79 small nucleolar RNA, H/ACA box 79 O - 20121230 -9606 677846 SNORA80 - ACA67 HGNC:32666 21 21q22.11 small nucleolar RNA, H/ACA box 80 snoRNA SNORA80 small nucleolar RNA, H/ACA box 80 O - 20121230 -9606 677847 SNORA81 - HBI-61 HGNC:32667|MIM:611334 3 3q27.3 small nucleolar RNA, H/ACA box 81 snoRNA SNORA81 small nucleolar RNA, H/ACA box 81 O - 20121230 -9606 677848 SNORD1A - R38A|snR38A HGNC:32556 17 17q25.1 small nucleolar RNA, C/D box 1A snoRNA SNORD1A small nucleolar RNA, C/D box 1A O - 20121230 -9606 677849 SNORD1B - R38B|snR38B HGNC:32676 17 17q25.1 small nucleolar RNA, C/D box 1B snoRNA SNORD1B small nucleolar RNA, C/D box 1B O - 20121230 -9606 677850 SNORD1C - R38C|snR38C HGNC:32677 17 17q25.1 small nucleolar RNA, C/D box 1C snoRNA SNORD1C small nucleolar RNA, C/D box 1C O - 20121230 -9606 677880 THEM4P1 - - HGNC:32692 12 12p12.1 thioesterase superfamily member 4 pseudogene 1 pseudo THEM4P1 thioesterase superfamily member 4 pseudogene 1 O - 20121230 -9606 677882 SNORA59B - ACA59 HGNC:32658 17 17p11.2 small nucleolar RNA, H/ACA box 59B snoRNA SNORA59B small nucleolar RNA, H/ACA box 59B O - 20121230 -9606 677883 CHTF8P1 RP11-377B2.1 CHTF8P|CTF8P HGNC:35443 X Xp11.3 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) pseudogene 1 pseudo CHTF8P1 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 677885 SNORA59A - ACA59 HGNC:32653 1 1p36.21 small nucleolar RNA, H/ACA box 59A snoRNA SNORA59A small nucleolar RNA, H/ACA box 59A O - 20121230 -9606 678655 CD27-AS1 - - HGNC:43896 12 12p13.31 CD27 antisense RNA 1 miscRNA CD27-AS1 CD27 antisense RNA 1 O - 20121230 -9606 678656 ZRF1PS - - - 6 6p21.31-p21.1 zuotin related factor 1 pseudogene pseudo - - - - 20121230 -9606 684959 SNORA25 - ACA25 HGNC:32615 11 11q21 small nucleolar RNA, H/ACA box 25 snoRNA SNORA25 small nucleolar RNA, H/ACA box 25 O - 20121230 -9606 692053 SNORD9 - mgU6-53B HGNC:32705 14 14q11.2 small nucleolar RNA, C/D box 9 snoRNA SNORD9 small nucleolar RNA, C/D box 9 O - 20121230 -9606 692057 SNORD12 - HBII-99|MIR1259|MIRN1259 HGNC:32708 20 20q13.13 small nucleolar RNA, C/D box 12 snoRNA SNORD12 small nucleolar RNA, C/D box 12 O - 20121230 -9606 692058 SNORD11 - HBII-95 HGNC:32707 2 2q33.1 small nucleolar RNA, C/D box 11 snoRNA SNORD11 small nucleolar RNA, C/D box 11 O - 20121230 -9606 692063 SNORA32 - ACA32 HGNC:32622 11 11q21 small nucleolar RNA, H/ACA box 32 snoRNA SNORA32 small nucleolar RNA, H/ACA box 32 O - 20121230 -9606 692072 SNORD5 - mgh28S-2410 HGNC:32702 11 11q21 small nucleolar RNA, C/D box 5 snoRNA SNORD5 small nucleolar RNA, C/D box 5 O - 20121230 -9606 692073 SNORA16A - ACA16 HGNC:32605 1 1p35.3 small nucleolar RNA, H/ACA box 16A snoRNA SNORA16A small nucleolar RNA, H/ACA box 16A O - 20121230 -9606 692075 SNORD6 - mgh28S-2412 HGNC:32703 11 11q21 small nucleolar RNA, C/D box 6 snoRNA SNORD6 small nucleolar RNA, C/D box 6 O - 20121230 -9606 692076 SNORD7 - Z30|mgU6-47 HGNC:32704 17 17q12 small nucleolar RNA, C/D box 7 snoRNA SNORD7 small nucleolar RNA, C/D box 7 O - 20121230 -9606 692084 SNORD13 - RNU13|U13 HGNC:32711 8 8p12 small nucleolar RNA, C/D box 13 snoRNA SNORD13 small nucleolar RNA, C/D box 13 O - 20121230 -9606 692085 SNORD45C - U45C HGNC:32720 1 1p31.1 small nucleolar RNA, C/D box 45C snoRNA SNORD45C small nucleolar RNA, C/D box 45C O - 20121230 -9606 692086 SNORD17 - HBI-43 HGNC:32713 20 20p11.23 small nucleolar RNA, C/D box 17 snoRNA SNORD17 small nucleolar RNA, C/D box 17 O - 20121230 -9606 692087 SNORD49B - U49B HGNC:32721 17 17p11.2 small nucleolar RNA, C/D box 49B snoRNA SNORD49B small nucleolar RNA, C/D box 49B O - 20121230 -9606 692088 SNORD50B - U50'|U50B HGNC:32722|MIM:613264 6 6q14.3 small nucleolar RNA, C/D box 50B snoRNA SNORD50B small nucleolar RNA, C/D box 50B O - 20121230 -9606 692089 SNORD19 - HBII-108 HGNC:32717 3 3p21.1 small nucleolar RNA, C/D box 19 snoRNA SNORD19 small nucleolar RNA, C/D box 19 O - 20121230 -9606 692090 SNORD59B - U59B HGNC:32723 12 12q13.3 small nucleolar RNA, C/D box 59B snoRNA SNORD59B small nucleolar RNA, C/D box 59B O - 20121230 -9606 692091 SNORD23 - HBII-115 HGNC:32718 19 19q13.32 small nucleolar RNA, C/D box 23 snoRNA SNORD23 small nucleolar RNA, C/D box 23 O - 20121230 -9606 692092 SNORD32B - U32B HGNC:32719 6 6p22.1 small nucleolar RNA, C/D box 32B snoRNA SNORD32B small nucleolar RNA, C/D box 32B O - 20121230 -9606 692093 SNORD62B - U62|U62B HGNC:23031 9 9q34.13 small nucleolar RNA, C/D box 62B snoRNA SNORD62B small nucleolar RNA, C/D box 62B O - 20121230 -9606 692094 MSMP - PSMP HGNC:29663|MIM:612191|Ensembl:ENSG00000215183|Vega:OTTHUMG00000019882 9 9p13.3 microseminoprotein, prostate associated protein-coding MSMP microseminoprotein, prostate associated O PC3 prostate cancer cell-secreted microprotein|prostate-associated microseminoprotein 20121230 -9606 692099 FAM86DP - FAM86D HGNC:32659 3 3p12.3 family with sequence similarity 86, member D, pseudogene pseudo FAM86DP family with sequence similarity 86, member D, pseudogene O - 20121230 -9606 692106 SNORD65 - HBII-135 HGNC:32726 17 17p11.2 small nucleolar RNA, C/D box 65 snoRNA SNORD65 small nucleolar RNA, C/D box 65 O - 20121209 -9606 692107 SNORD66 - HBII-142 HGNC:32727 3 3q27.1 small nucleolar RNA, C/D box 66 snoRNA SNORD66 small nucleolar RNA, C/D box 66 O - 20121230 -9606 692108 SNORD67 - HBII-166 HGNC:32728 11 11p11.2 small nucleolar RNA, C/D box 67 snoRNA SNORD67 small nucleolar RNA, C/D box 67 O - 20121230 -9606 692109 SNORD69 - HBII-210 HGNC:32730 3 3p21.1 small nucleolar RNA, C/D box 69 snoRNA SNORD69 small nucleolar RNA, C/D box 69 O - 20121230 -9606 692110 SNORD70 - HBII-234 HGNC:32731 2 2q33.1 small nucleolar RNA, C/D box 70 snoRNA SNORD70 small nucleolar RNA, C/D box 70 O - 20121230 -9606 692111 SNORD71 - HBII-239|MIRN768|hsa-mir-768 HGNC:32732 16 16q22.2 small nucleolar RNA, C/D box 71 snoRNA SNORD71 small nucleolar RNA, C/D box 71 O - 20121230 -9606 692146 RPS26P4 - RPS26_32_1733 HGNC:23775 21 21q22.2 ribosomal protein S26 pseudogene 4 pseudo RPS26P4 ribosomal protein S26 pseudogene 4 O - 20121230 -9606 692147 HMGB1P8 - HMG1L8|HMGB1L8 HGNC:13319 15 15q22 high mobility group box 1 pseudogene 8 pseudo HMGB1P8 high mobility group box 1 pseudogene 8 O - 20121230 -9606 692148 SCARNA10 - U85 HGNC:32567 12 12p13.31 small Cajal body-specific RNA 10 miscRNA SCARNA10 small Cajal body-specific RNA 10 O - 20121230 -9606 692149 SCARNA14 - U100 HGNC:32571 15 15q22.31 small Cajal body-specific RNA 14 miscRNA SCARNA14 small Cajal body-specific RNA 14 O - 20121230 -9606 692157 SNORA16B - U98b HGNC:32606 1 1q32.3 small nucleolar RNA, H/ACA box 16B snoRNA SNORA16B small nucleolar RNA, H/ACA box 16B O - 20121230 -9606 692158 SNORA57 - U99 HGNC:32651 11 11q12.2 small nucleolar RNA, H/ACA box 57 snoRNA SNORA57 small nucleolar RNA, H/ACA box 57 O - 20121230 -9606 692159 GRASPOS - - HGNC:32680 12 12q13.13 GRP1-associated scaffold protein opposite strand unknown GRASPOS GRP1-associated scaffold protein opposite strand O - 20120706 -9606 692195 SNORD75 - U75 HGNC:32735 1 1q25.1 small nucleolar RNA, C/D box 75 snoRNA SNORD75 small nucleolar RNA, C/D box 75 O - 20121230 -9606 692196 SNORD76 - U76 HGNC:32736 1 1q25.1 small nucleolar RNA, C/D box 76 snoRNA SNORD76 small nucleolar RNA, C/D box 76 O - 20121230 -9606 692197 SNORD77 - U77 HGNC:32737 1 1q25.1 small nucleolar RNA, C/D box 77 snoRNA SNORD77 small nucleolar RNA, C/D box 77 O - 20121230 -9606 692198 SNORD78 - U78 HGNC:32738 1 1q25.1 small nucleolar RNA, C/D box 78 snoRNA SNORD78 small nucleolar RNA, C/D box 78 O - 20121230 -9606 692199 SNORD84 - U84 HGNC:32743 6 6p21.33 small nucleolar RNA, C/D box 84 snoRNA SNORD84 small nucleolar RNA, C/D box 84 O - 20121230 -9606 692200 SNORD85 - HBII-251 HGNC:32744 1 1p35.2 small nucleolar RNA, C/D box 85 snoRNA SNORD85 small nucleolar RNA, C/D box 85 O - 20121230 -9606 692201 SNORD86 - U86 HGNC:32745 20 20p13 small nucleolar RNA, C/D box 86 snoRNA SNORD86 small nucleolar RNA, C/D box 86 O - 20121230 -9606 692202 SNORD88A - HBII-180A HGNC:32747 19 19q13.33 small nucleolar RNA, C/D box 88A snoRNA SNORD88A small nucleolar RNA, C/D box 88A O - 20121230 -9606 692203 SNORD88B - HBII-180B HGNC:32748 19 19q13.33 small nucleolar RNA, C/D box 88B snoRNA SNORD88B small nucleolar RNA, C/D box 88B O - 20121230 -9606 692204 SNORD88C - HBII-180C HGNC:32749 19 19q13.33 small nucleolar RNA, C/D box 88C snoRNA SNORD88C small nucleolar RNA, C/D box 88C O - 20121230 -9606 692205 SNORD89 - HBII-289 HGNC:32750 2 2q11.2 small nucleolar RNA, C/D box 89 snoRNA SNORD89 small nucleolar RNA, C/D box 89 O - 20121230 -9606 692206 SNORD90 - HBII-295 HGNC:32751 9 9q33.2 small nucleolar RNA, C/D box 90 snoRNA SNORD90 small nucleolar RNA, C/D box 90 O - 20121230 -9606 692207 SNORD91A - HBII-296a HGNC:32752 17 17p13.3 small nucleolar RNA, C/D box 91A snoRNA SNORD91A small nucleolar RNA, C/D box 91A O - 20121230 -9606 692208 SNORD91B - HBII-296b HGNC:32753 17 17p13.3 small nucleolar RNA, C/D box 91B snoRNA SNORD91B small nucleolar RNA, C/D box 91B O - 20121230 -9606 692209 SNORD92 - HBII-316 HGNC:32754 2 2p23.2 small nucleolar RNA, C/D box 92 snoRNA SNORD92 small nucleolar RNA, C/D box 92 O - 20121230 -9606 692210 SNORD93 - HBII-336 HGNC:32755 7 7p15.3 small nucleolar RNA, C/D box 93 snoRNA SNORD93 small nucleolar RNA, C/D box 93 O - 20121230 -9606 692211 SNORD98 - HBII-419 HGNC:32761 10 10q21.3 small nucleolar RNA, C/D box 98 snoRNA SNORD98 small nucleolar RNA, C/D box 98 O - 20121230 -9606 692212 SNORD99 - HBII-420 HGNC:32762 1 1p35.3 small nucleolar RNA, C/D box 99 snoRNA SNORD99 small nucleolar RNA, C/D box 99 O - 20121230 -9606 692213 SNORD110 - HBII-55 HGNC:32775 20 20p13 small nucleolar RNA, C/D box 110 snoRNA SNORD110 small nucleolar RNA, C/D box 110 O - 20121230 -9606 692214 SNORD111 - HBII-82 HGNC:32776 16 16q22.1 small nucleolar RNA, C/D box 111 snoRNA SNORD111 small nucleolar RNA, C/D box 111 O - 20121230 -9606 692215 SNORD112 - 14q(0) HGNC:32777|MIM:613649 14 14q32.31 small nucleolar RNA, C/D box 112 snoRNA SNORD112 small nucleolar RNA, C/D box 112 O - 20121230 -9606 692216 SNORD113@ - 14q(I) HGNC:32778 14 14q32.31 small nucleolar RNA, C/D box 113 cluster other SNORD113@ small nucleolar RNA, C/D box 113 cluster O - 20120318 -9606 692217 SNORD114@ - 14q(II) HGNC:32779 14 14q32.31 small nucleolar RNA, C/D box 114 cluster other SNORD114@ small nucleolar RNA, C/D box 114 cluster O - 20120318 -9606 692218 SNORD115@ - HBII-52 HGNC:32780 15 15q11.2 small nucleolar RNA, C/D box 115 cluster other SNORD115@ small nucleolar RNA, C/D box 115 cluster O - 20121230 -9606 692219 DFNB65 - - HGNC:28113|MIM:610248 20 20q13.2-q13.32 deafness, autosomal recessive 65 unknown DFNB65 deafness, autosomal recessive 65 O - 20120622 -9606 692220 DFNB62 - - HGNC:29439|MIM:610143 12 12p13.2-p11.23 deafness, autosomal recessive 62 unknown DFNB62 deafness, autosomal recessive 62 O - 20120622 -9606 692222 OPA5 - - HGNC:32787|MIM:610708 22 22q12.1-q13.1 optic atrophy 5 (autosomal dominant) unknown OPA5 optic atrophy 5 (autosomal dominant) O - 20120622 -9606 692223 SNORD97 - U97 HGNC:32760 11 11p15.3 small nucleolar RNA, C/D box 97 snoRNA SNORD97 small nucleolar RNA, C/D box 97 O - 20121230 -9606 692224 FBXO22-AS1 - FBXO22OS|FISTC1OS|HsT18082|NCRNA00053 HGNC:31025 15 15q24.2 FBXO22 antisense RNA 1 miscRNA FBXO22-AS1 FBXO22 antisense RNA 1 O - 20121230 -9606 692225 SNORD94 - U94 HGNC:32756 2 2p11.2 small nucleolar RNA, C/D box 94 snoRNA SNORD94 small nucleolar RNA, C/D box 94 O - 20121230 -9606 692226 SNORD96B - U96b HGNC:32759 X Xq23 small nucleolar RNA, C/D box 96B snoRNA SNORD96B small nucleolar RNA, C/D box 96B O - 20121230 -9606 692227 SNORD104 - U104 HGNC:32768 17 17q23.3 small nucleolar RNA, C/D box 104 snoRNA SNORD104 small nucleolar RNA, C/D box 104 O - 20121230 -9606 692229 SNORD105 - U105 HGNC:32769 19 19p13.2 small nucleolar RNA, C/D box 105 snoRNA SNORD105 small nucleolar RNA, C/D box 105 O - 20121230 -9606 692231 LOC692231 - - - 22 22q11.21 Ras homolog enriched in brain pseudogene pseudo - - - - 20121230 -9606 692232 SNORD3@ - U3|U3A|U3B HGNC:32739 17 17p11.2 small nucleolar RNA, C/D box 3 cluster other SNORD3@ small nucleolar RNA, C/D box 3 cluster O - 20120318 -9606 692233 SNORD117 - U83 HGNC:32742 6 6p21.33 small nucleolar RNA, C/D box 117 snoRNA SNORD117 small nucleolar RNA, C/D box 117 O - 20121230 -9606 692234 SNORD103A - U103 HGNC:32766 1 1p35.2 small nucleolar RNA, C/D box 103A snoRNA SNORD103A small nucleolar RNA, C/D box 103A O - 20121230 -9606 692235 SNORD103B - U103B HGNC:32767 1 1p35.2 small nucleolar RNA, C/D box 103B snoRNA SNORD103B small nucleolar RNA, C/D box 103B O - 20121230 -9606 692236 SNORD116@ - HBII-85|PET1|PWCR1 HGNC:32781 15 15q11.2 small nucleolar RNA, C/D box 116 cluster other SNORD116@ small nucleolar RNA, C/D box 116 cluster O - 20121230 -9606 692246 LOC692246 - - - 22 22q13.2-q13.3 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 692247 LOC692247 - - - 11 11p15.5 uncharacterized LOC692247 unknown - - - - 20121230 -9606 692312 PPAN-P2RY11 - - HGNC:33526|Ensembl:ENSG00000130810|Ensembl:ENSG00000243207|Vega:OTTHUMG00000150165 19 19p13 PPAN-P2RY11 readthrough protein-coding PPAN-P2RY11 PPAN-P2RY11 readthrough O PPAN-P2RY11 protein|PPAN-P2RY11 readthrough transcript|SSF1/P2Y11 protein 20121230 -9606 693120 MIR33B - MIRN33B|hsa-mir-33b HGNC:32791|MIM:613486|miRBase:MI0003646 17 17p11.2 microRNA 33b miscRNA MIR33B microRNA 33b O - 20121230 -9606 693121 MIR411 - MIRN411|hsa-mir-411 HGNC:32792|miRBase:MI0003675 14 14q32.31 microRNA 411 miscRNA MIR411 microRNA 411 O - 20121230 -9606 693122 MIR421 - MIRN421|hsa-mir-421 HGNC:32793|miRBase:MI0003685 X Xq13.2 microRNA 421 miscRNA MIR421 microRNA 421 O - 20121230 -9606 693123 MIR449B - MIRN449B HGNC:32794|MIM:613132|miRBase:MI0003673 5 5q11.2 microRNA 449b miscRNA MIR449B microRNA 449b O - 20121230 -9606 693124 MIR532 - MIRN532|hsa-mir-532 HGNC:32795|miRBase:MI0003205 X Xp11.23 microRNA 532 miscRNA MIR532 microRNA 532 O - 20121209 -9606 693125 MIR548A1 - MIRN548A1 HGNC:32796|miRBase:MI0003593 6 - microRNA 548a-1 miscRNA MIR548A1 microRNA 548a-1 O - 20121230 -9606 693126 MIR548A2 - MIRN548A2 HGNC:32797|miRBase:MI0003598 6 - microRNA 548a-2 miscRNA MIR548A2 microRNA 548a-2 O - 20121230 -9606 693127 MIR548A3 - MIRN548A3 HGNC:32798|miRBase:MI0003612 8 - microRNA 548a-3 miscRNA MIR548A3 microRNA 548a-3 O - 20121209 -9606 693128 MIR548B - MIRN548B HGNC:32799|miRBase:MI0003596 6 6q22.31 microRNA 548b miscRNA MIR548B microRNA 548b O - 20121230 -9606 693129 MIR548C - MIRN548C HGNC:32800|miRBase:MI0003630 12 - microRNA 548c miscRNA MIR548C microRNA 548c O - 20121230 -9606 693130 MIR548D1 - MIRN548D1 HGNC:32801|miRBase:MI0003668 8 - microRNA 548d-1 miscRNA MIR548D1 microRNA 548d-1 O - 20121230 -9606 693131 MIR548D2 - MIRN548D2 HGNC:32802|miRBase:MI0003671 17 - microRNA 548d-2 miscRNA MIR548D2 microRNA 548d-2 O - 20121230 -9606 693132 MIR549 - MIRN549|hsa-mir-549 HGNC:32803|miRBase:MI0003679 15 15q25.1 microRNA 549 miscRNA MIR549 microRNA 549 O - 20121230 -9606 693133 MIR550A1 - MIR550-1|MIRN550-1|hsa-mir-550a-1 HGNC:32804|miRBase:MI0003600 7 7p14.3 microRNA 550a-1 miscRNA MIR550A1 microRNA 550a-1 O - 20121230 -9606 693134 MIR550A2 - MIR550-2|MIRN550-2|hsa-mir-550a-2 HGNC:32805|miRBase:MI0003601 7 7p14.3 microRNA 550a-2 miscRNA MIR550A2 microRNA 550a-2 O - 20121230 -9606 693135 MIR551A - MIRN551A HGNC:32806|miRBase:MI0003556 1 1p36.32 microRNA 551a miscRNA MIR551A microRNA 551a O - 20121230 -9606 693136 MIR551B - MIRN551B HGNC:32807|miRBase:MI0003575 3 3q26.2 microRNA 551b miscRNA MIR551B microRNA 551b O - 20121230 -9606 693137 MIR552 - MIRN552|hsa-mir-552 HGNC:32808|miRBase:MI0003557 1 1p34.3 microRNA 552 miscRNA MIR552 microRNA 552 O - 20121230 -9606 693138 MIR553 - MIRN553|hsa-mir-553 HGNC:32809|miRBase:MI0003558 1 1p21.2 microRNA 553 miscRNA MIR553 microRNA 553 O - 20121230 -9606 693139 MIR554 - MIRN554|hsa-mir-554 HGNC:32810|miRBase:MI0003559 1 1q21.3 microRNA 554 miscRNA MIR554 microRNA 554 O - 20121230 -9606 693140 MIR555 - MIRN555|hsa-mir-555 HGNC:32811|miRBase:MI0003561 1 1q22 microRNA 555 miscRNA MIR555 microRNA 555 O - 20121230 -9606 693141 MIR556 - MIRN556|hsa-mir-556 HGNC:32812|miRBase:MI0003562 1 1q23.3 microRNA 556 miscRNA MIR556 microRNA 556 O - 20121230 -9606 693142 MIR557 - MIRN557|hsa-mir-557 HGNC:32813|miRBase:MI0003563 1 1q24.2 microRNA 557 miscRNA MIR557 microRNA 557 O - 20121230 -9606 693143 MIR558 - MIRN558|hsa-mir-558 HGNC:32814|miRBase:MI0003564 2 2p22.3 microRNA 558 miscRNA MIR558 microRNA 558 O - 20121230 -9606 693144 MIR559 - MIRN559|hsa-mir-559 HGNC:32815|miRBase:MI0003565 2 2p21 microRNA 559 miscRNA MIR559 microRNA 559 O - 20121230 -9606 693146 MIR561 - MIRN561|hsa-mir-561 HGNC:32817|miRBase:MI0003567 2 2q32.1 microRNA 561 miscRNA MIR561 microRNA 561 O - 20121230 -9606 693147 MIR562 - MIRN562|hsa-mir-562 HGNC:32818|miRBase:MI0003568 2 - microRNA 562 miscRNA MIR562 microRNA 562 O - 20121230 -9606 693148 MIR563 - MIRN563|hsa-mir-563 HGNC:32819|miRBase:MI0003569 3 3p25.1 microRNA 563 miscRNA MIR563 microRNA 563 O - 20121230 -9606 693149 MIR564 - MIRN564|hsa-mir-564 HGNC:32820|miRBase:MI0003570 3 3p21.31 microRNA 564 miscRNA MIR564 microRNA 564 O - 20121230 -9606 693151 MIR566 - MIRN566|hsa-mir-566 HGNC:32822|miRBase:MI0003572 3 - microRNA 566 miscRNA MIR566 microRNA 566 O - 20121230 -9606 693152 MIR567 - MIRN567|hsa-mir-567 HGNC:32823|miRBase:MI0003573 3 3q13.2 microRNA 567 miscRNA MIR567 microRNA 567 O - 20121230 -9606 693153 MIR568 - MIRN568|hsa-mir-568 HGNC:32824|miRBase:MI0003574 3 - microRNA 568 miscRNA MIR568 microRNA 568 O - 20121230 -9606 693154 MIR569 - MIRN569|hsa-mir-569 HGNC:32825|miRBase:MI0003576 3 3q26.2 microRNA 569 miscRNA MIR569 microRNA 569 O - 20121230 -9606 693155 MIR570 - MIRN570|hsa-mir-570 HGNC:32826|MIM:614538|miRBase:MI0003577 3 - microRNA 570 miscRNA MIR570 microRNA 570 O - 20121230 -9606 693156 MIR571 - MIRN571|hsa-mir-571 HGNC:32827|miRBase:MI0003578 4 4p16.3 microRNA 571 miscRNA MIR571 microRNA 571 O - 20121230 -9606 693157 MIR572 - MIRN572|hsa-mir-572 HGNC:32828|miRBase:MI0003579 4 4p15.33 microRNA 572 miscRNA MIR572 microRNA 572 O - 20121230 -9606 693158 MIR573 - MIRN573|hsa-mir-573 HGNC:32829|miRBase:MI0003580 4 4p15.2 microRNA 573 miscRNA MIR573 microRNA 573 O - 20121230 -9606 693159 MIR574 - MIRN574|hsa-mir-574 HGNC:32830|miRBase:MI0003581 4 - microRNA 574 miscRNA MIR574 microRNA 574 O - 20121230 -9606 693160 MIR575 - MIRN575|hsa-mir-575 HGNC:32831|miRBase:MI0003582 4 4q21.22 microRNA 575 miscRNA MIR575 microRNA 575 O - 20121230 -9606 693161 MIR576 - MIRN576|hsa-mir-576 HGNC:32832|miRBase:MI0003583 4 - microRNA 576 miscRNA MIR576 microRNA 576 O - 20121230 -9606 693162 MIR577 - MIRN577|hsa-mir-577 HGNC:32833|miRBase:MI0003584 4 4q26 microRNA 577 miscRNA MIR577 microRNA 577 O - 20121230 -9606 693163 MIR578 - MIRN578|hsa-mir-578 HGNC:32834|miRBase:MI0003585 4 4q32.3 microRNA 578 miscRNA MIR578 microRNA 578 O - 20121230 -9606 693164 MIR579 - MIRN579|hsa-mir-579 HGNC:32835|miRBase:MI0003586 5 5p13.3 microRNA 579 miscRNA MIR579 microRNA 579 O - 20121230 -9606 693165 MIR580 - MIRN580|hsa-mir-580 HGNC:32836|miRBase:MI0003587 5 5p13.2 microRNA 580 miscRNA MIR580 microRNA 580 O - 20121230 -9606 693166 MIR581 - MIRN581|hsa-mir-581 HGNC:32837|miRBase:MI0003588 5 5q11.2 microRNA 581 miscRNA MIR581 microRNA 581 O - 20121230 -9606 693167 MIR582 - MIRN582|hsa-mir-582 HGNC:32838|miRBase:MI0003589 5 5q12.1 microRNA 582 miscRNA MIR582 microRNA 582 O - 20121230 -9606 693168 MIR583 - MIRN583|hsa-mir-583 HGNC:32839|miRBase:MI0003590 5 5q15 microRNA 583 miscRNA MIR583 microRNA 583 O - 20121230 -9606 693169 MIR584 - MIRN584|hsa-mir-584 HGNC:32840|miRBase:MI0003591 5 5q32 microRNA 584 miscRNA MIR584 microRNA 584 O - 20121230 -9606 693170 MIR585 - MIRN585|hsa-mir-585 HGNC:32841|miRBase:MI0003592 5 5q35.1 microRNA 585 miscRNA MIR585 microRNA 585 O - 20121230 -9606 693171 MIR586 - MIRN586|hsa-mir-586 HGNC:32842|miRBase:MI0003594 6 6p21.1 microRNA 586 miscRNA MIR586 microRNA 586 O - 20121230 -9606 693172 MIR587 - MIRN587|hsa-mir-587 HGNC:32843|miRBase:MI0003595 6 6q21 microRNA 587 miscRNA MIR587 microRNA 587 O - 20121230 -9606 693173 MIR588 - MIRN588|hsa-mir-588 HGNC:32844|miRBase:MI0003597 6 6q22.32 microRNA 588 miscRNA MIR588 microRNA 588 O - 20121230 -9606 693174 MIR589 - MIRN589|hsa-mir-589 HGNC:32845|miRBase:MI0003599 7 7p22.1 microRNA 589 miscRNA MIR589 microRNA 589 O - 20121230 -9606 693175 MIR590 - MIRN590|hsa-mir-590 HGNC:32846|miRBase:MI0003602 7 7q11.23 microRNA 590 miscRNA MIR590 microRNA 590 O - 20121230 -9606 693176 MIR591 - MIRN591|hsa-mir-591 HGNC:32847|miRBase:MI0003603 7 7q21.3 microRNA 591 miscRNA MIR591 microRNA 591 O - 20121230 -9606 693177 MIR592 - MIRN592|hsa-mir-592 HGNC:32848|miRBase:MI0003604 7 7q31.33 microRNA 592 miscRNA MIR592 microRNA 592 O - 20121230 -9606 693178 MIR593 - MIRN593|hsa-mir-593 HGNC:32849|miRBase:MI0003605 7 7q32.1 microRNA 593 miscRNA MIR593 microRNA 593 O - 20121230 -9606 693180 MIR595 - MIRN595|hsa-mir-595 HGNC:32851|miRBase:MI0003607 7 7q36.3 microRNA 595 miscRNA MIR595 microRNA 595 O - 20121230 -9606 693181 MIR596 - MIRN596|hsa-mir-596 HGNC:32852|miRBase:MI0003608 8 8p23.3 microRNA 596 miscRNA MIR596 microRNA 596 O - 20121230 -9606 693182 MIR597 - MIRN597|hsa-mir-597 HGNC:32853|miRBase:MI0003609 8 8p23.1 microRNA 597 miscRNA MIR597 microRNA 597 O - 20121230 -9606 693183 MIR598 - MIRN598|hsa-mir-598 HGNC:32854|miRBase:MI0003610 8 8p23.1 microRNA 598 miscRNA MIR598 microRNA 598 O - 20121230 -9606 693184 MIR599 - MIRN599|hsa-mir-599 HGNC:32855|miRBase:MI0003611 8 8q22.2 microRNA 599 miscRNA MIR599 microRNA 599 O - 20121230 -9606 693185 MIR600 - MIRN600|hsa-mir-600 HGNC:32856|miRBase:MI0003613 9 9q33.3 microRNA 600 miscRNA MIR600 microRNA 600 O - 20121230 -9606 693186 MIR601 - MIRN601|hsa-mir-601 HGNC:32857|miRBase:MI0003614 9 9q33.3 microRNA 601 miscRNA MIR601 microRNA 601 O - 20121230 -9606 693187 MIR602 - MIRN602|hsa-mir-602 HGNC:32858|miRBase:MI0003615 9 9q34.3 microRNA 602 miscRNA MIR602 microRNA 602 O - 20121230 -9606 693188 MIR603 - MIRN603|hsa-mir-603 HGNC:32859|miRBase:MI0003616 10 - microRNA 603 miscRNA MIR603 microRNA 603 O - 20121230 -9606 693189 MIR604 - MIRN604|hsa-mir-604 HGNC:32860|miRBase:MI0003617 10 10p11.23 microRNA 604 miscRNA MIR604 microRNA 604 O - 20121230 -9606 693190 MIR605 - MIRN605|hsa-mir-605 HGNC:32861|miRBase:MI0003618 10 10q21.1 microRNA 605 miscRNA MIR605 microRNA 605 O - 20121230 -9606 693191 MIR606 - MIRN606|hsa-mir-606 HGNC:32862|miRBase:MI0003619 10 10q22.2 microRNA 606 miscRNA MIR606 microRNA 606 O - 20121230 -9606 693192 MIR607 - MIRN607|hsa-mir-607 HGNC:32863|miRBase:MI0003620 10 - microRNA 607 miscRNA MIR607 microRNA 607 O - 20121230 -9606 693193 MIR608 - MIRN608|hsa-mir-608 HGNC:32864|miRBase:MI0003621 10 10q24.31 microRNA 608 miscRNA MIR608 microRNA 608 O - 20121230 -9606 693194 MIR609 - MIRN609|hsa-mir-609 HGNC:32865|miRBase:MI0003622 10 10q25.1 microRNA 609 miscRNA MIR609 microRNA 609 O - 20121230 -9606 693195 MIR610 - MIRN610|hsa-mir-610 HGNC:32866|MIM:612330|miRBase:MI0003623 11 11p14.1 microRNA 610 miscRNA MIR610 microRNA 610 O - 20121230 -9606 693196 MIR611 - MIRN611|hsa-mir-611 HGNC:32867|miRBase:MI0003624 11 11q12.2 microRNA 611 miscRNA MIR611 microRNA 611 O - 20121230 -9606 693197 MIR612 - MIRN612|hsa-mir-612 HGNC:32868|miRBase:MI0003625 11 11q13.1 microRNA 612 miscRNA MIR612 microRNA 612 O - 20121230 -9606 693198 MIR613 - MIRN613|hsa-mir-613 HGNC:32869|miRBase:MI0003626 12 12p13.1 microRNA 613 miscRNA MIR613 microRNA 613 O - 20121230 -9606 693199 MIR614 - MIRN614|hsa-mir-614 HGNC:32870|miRBase:MI0003627 12 12p13.1 microRNA 614 miscRNA MIR614 microRNA 614 O - 20121230 -9606 693200 MIR615 - MIRN615|hsa-mir-615 HGNC:32871|miRBase:MI0003628 12 12q13.13 microRNA 615 miscRNA MIR615 microRNA 615 O - 20121230 -9606 693201 MIR616 - MIRN616|hsa-mir-616 HGNC:32872|MIM:614489|miRBase:MI0003629 12 12q13.3 microRNA 616 miscRNA MIR616 microRNA 616 O - 20121230 -9606 693202 MIR617 - MIRN617|hsa-mir-617 HGNC:32873|miRBase:MI0003631 12 12q21.31 microRNA 617 miscRNA MIR617 microRNA 617 O - 20121230 -9606 693203 MIR618 - MIRN618|hsa-mir-618 HGNC:32874|miRBase:MI0003632 12 12q21.31 microRNA 618 miscRNA MIR618 microRNA 618 O - 20121230 -9606 693204 MIR619 - MIRN619|hsa-mir-619 HGNC:32875|miRBase:MI0003633 12 12q24.11 microRNA 619 miscRNA MIR619 microRNA 619 O - 20121230 -9606 693205 MIR620 - MIRN620|hsa-mir-620 HGNC:32876|miRBase:MI0003634 12 - microRNA 620 miscRNA MIR620 microRNA 620 O - 20121230 -9606 693206 MIR621 - MIRN621|hsa-mir-621 HGNC:32877|miRBase:MI0003635 13 13q14.11 microRNA 621 miscRNA MIR621 microRNA 621 O - 20121230 -9606 693207 MIR622 - MIRN622|hsa-mir-622 HGNC:32878|miRBase:MI0003636 13 13q31.3 microRNA 622 miscRNA MIR622 microRNA 622 O - 20121230 -9606 693208 MIR623 - MIRN623|hsa-mir-623 HGNC:32879|miRBase:MI0003637 13 13q32.3 microRNA 623 miscRNA MIR623 microRNA 623 O - 20121230 -9606 693209 MIR624 - MIRN624|hsa-mir-624 HGNC:32880|miRBase:MI0003638 14 14q12 microRNA 624 miscRNA MIR624 microRNA 624 O - 20121230 -9606 693210 MIR625 - MIRN625|hsa-mir-625 HGNC:32881|miRBase:MI0003639 14 14q23.3 microRNA 625 miscRNA MIR625 microRNA 625 O - 20121230 -9606 693211 MIR626 - MIRN626|hsa-mir-626 HGNC:32882|miRBase:MI0003640 15 15q15.1 microRNA 626 miscRNA MIR626 microRNA 626 O - 20121230 -9606 693212 MIR627 - MIRN627|hsa-mir-627 HGNC:32883|miRBase:MI0003641 15 15q15.1 microRNA 627 miscRNA MIR627 microRNA 627 O - 20121230 -9606 693213 MIR628 - MIRN628|hsa-mir-628 HGNC:32884|miRBase:MI0003642 15 15q21.3 microRNA 628 miscRNA MIR628 microRNA 628 O - 20121230 -9606 693214 MIR629 - MIRN629|hsa-mir-629 HGNC:32885|miRBase:MI0003643 15 15q23 microRNA 629 miscRNA MIR629 microRNA 629 O - 20121230 -9606 693215 MIR630 - MIRN630|hsa-mir-630 HGNC:32886|miRBase:MI0003644 15 15q24.1 microRNA 630 miscRNA MIR630 microRNA 630 O - 20121230 -9606 693216 MIR631 - MIRN631|hsa-mir-631 HGNC:32887|miRBase:MI0003645 15 15q24.2 microRNA 631 miscRNA MIR631 microRNA 631 O - 20121230 -9606 693217 MIR632 - MIRN632|hsa-mir-632 HGNC:32888|miRBase:MI0003647 17 17q11.2 microRNA 632 miscRNA MIR632 microRNA 632 O - 20121230 -9606 693218 MIR633 - MIRN633|hsa-mir-633 HGNC:32889|miRBase:MI0003648 17 17q23.2 microRNA 633 miscRNA MIR633 microRNA 633 O - 20121230 -9606 693219 MIR634 - MIRN634|hsa-mir-634 HGNC:32890|miRBase:MI0003649 17 17q24.2 microRNA 634 miscRNA MIR634 microRNA 634 O - 20121230 -9606 693220 MIR635 - MIRN635|hsa-mir-635 HGNC:32891|miRBase:MI0003650 17 17q24.2 microRNA 635 miscRNA MIR635 microRNA 635 O - 20121230 -9606 693221 MIR636 - MIRN636|hsa-mir-636 HGNC:32892|miRBase:MI0003651 17 17q25.1 microRNA 636 miscRNA MIR636 microRNA 636 O - 20121230 -9606 693222 MIR637 - MIRN637|hsa-mir-637 HGNC:32893|miRBase:MI0003652 19 19p13.3 microRNA 637 miscRNA MIR637 microRNA 637 O - 20121230 -9606 693223 MIR638 - MIRN638|hsa-mir-638 HGNC:32894|miRBase:MI0003653 19 19p13.2 microRNA 638 miscRNA MIR638 microRNA 638 O - 20121230 -9606 693224 MIR639 - MIRN639|hsa-mir-639 HGNC:32895|miRBase:MI0003654 19 19p13.12 microRNA 639 miscRNA MIR639 microRNA 639 O - 20121230 -9606 693225 MIR640 - MIRN640|hsa-mir-640 HGNC:32896|miRBase:MI0003655 19 19p13.11 microRNA 640 miscRNA MIR640 microRNA 640 O - 20121230 -9606 693226 MIR641 - MIRN641|hsa-mir-641 HGNC:32897|miRBase:MI0003656 19 19q13.2 microRNA 641 miscRNA MIR641 microRNA 641 O - 20121230 -9606 693227 MIR642A - MIR642|MIRN642|hsa-mir-642|hsa-mir-642a HGNC:32898 19 19q13.32 microRNA 642a miscRNA MIR642A microRNA 642a O - 20121230 -9606 693228 MIR643 - MIRN643|hsa-mir-643 HGNC:32899|miRBase:MI0003658 19 19q13.41 microRNA 643 miscRNA MIR643 microRNA 643 O - 20121230 -9606 693229 MIR644A - MIR644|MIRN644|hsa-mir-644|hsa-mir-644a HGNC:32900|miRBase:MI0003659 20 20q11.22 microRNA 644a miscRNA MIR644A microRNA 644a O - 20121230 -9606 693230 MIR645 - MIRN645|hsa-mir-645 HGNC:32901|miRBase:MI0003660 20 20q13.13 microRNA 645 miscRNA MIR645 microRNA 645 O - 20121230 -9606 693231 MIR646 - MIRN646|hsa-mir-646 HGNC:32902|miRBase:MI0003661 20 20q13.33 microRNA 646 miscRNA MIR646 microRNA 646 O - 20121230 -9606 693232 MIR647 - MIRN647|hsa-mir-647 HGNC:32903|miRBase:MI0003662 20 20q13.33 microRNA 647 miscRNA MIR647 microRNA 647 O - 20121230 -9606 693233 MIR648 - MIRN648|hsa-mir-648 HGNC:32904|miRBase:MI0003663 22 22q11.21 microRNA 648 miscRNA MIR648 microRNA 648 O - 20121230 -9606 693234 MIR649 - MIRN649|hsa-mir-649 HGNC:32905|miRBase:MI0003664 22 - microRNA 649 miscRNA MIR649 microRNA 649 O - 20121230 -9606 693235 MIR92B - MIRN92B|hsa-mir-92b HGNC:32920|miRBase:MI0003560 1 1q22 microRNA 92b miscRNA MIR92B microRNA 92b O - 20121230 -9606 723778 MIR650 - MIRN650|hsa-mir-650 HGNC:32906|miRBase:MI0003665 22 22q11.22 microRNA 650 miscRNA MIR650 microRNA 650 O - 20121230 -9606 723779 MIR651 - MIRN651|hsa-mir-651 HGNC:32907|miRBase:MI0003666 X Xp22.31 microRNA 651 miscRNA MIR651 microRNA 651 O - 20121230 -9606 723788 MIG7 - - - 1 1p22.1 mig-7 unknown - - - - 20120710 -9606 723790 HIST2H2AA4 - H2A/R HGNC:29668|Ensembl:ENSG00000203812|Vega:OTTHUMG00000012097 1 1q21.2 histone cluster 2, H2aa4 protein-coding HIST2H2AA4 histone cluster 2, H2aa4 O histone 2, H2aa4|histone H2A type 2-A|histone H2A/r 20121230 -9606 723805 LOC723805 - - - 19 19q13.2 interleukin-like unknown - - - - 20121230 -9606 723809 LHFPL3-AS2 - - HGNC:44106 7 - LHFPL3 antisense RNA 2 miscRNA LHFPL3-AS2 LHFPL3 antisense RNA 2 O - 20121230 -9606 723961 INS-IGF2 - INSIGF HGNC:33527|Ensembl:ENSG00000129965|Vega:OTTHUMG00000166213 11 11p15.5 INS-IGF2 readthrough protein-coding INS-IGF2 INS-IGF2 readthrough O insulin- insulin-like growth factor 2 read-through|insulin- insulin-like growth factor 2 read-through product 20121230 -9606 723972 ANP32AP1 - - HGNC:42949 15 15q14 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 pseudo ANP32AP1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 O - 20121230 -9606 724022 MIR652 - MIRN652|hsa-mir-652 HGNC:32908|miRBase:MI0003667 X Xq23 microRNA 652 miscRNA MIR652 microRNA 652 O - 20121230 -9606 724023 MIR653 - MIRN653|hsa-mir-653 HGNC:32909|miRBase:MI0003674 7 7q21.3 microRNA 653 miscRNA MIR653 microRNA 653 O - 20121230 -9606 724024 MIR654 - MIRN654|hsa-mir-654 HGNC:32910|miRBase:MI0003676 14 14q32.31 microRNA 654 miscRNA MIR654 microRNA 654 O - 20121230 -9606 724025 MIR655 - MIRN655|hsa-mir-655 HGNC:32911|miRBase:MI0003677 14 14q32.31 microRNA 655 miscRNA MIR655 microRNA 655 O - 20121230 -9606 724026 MIR656 - MIRN656|hsa-mir-656 HGNC:32912|miRBase:MI0003678 14 14q32.31 microRNA 656 miscRNA MIR656 microRNA 656 O - 20121230 -9606 724027 MIR657 - MIRN657|hsa-mir-657 HGNC:32913|miRBase:MI0003681 17 17q25.3 microRNA 657 miscRNA MIR657 microRNA 657 O - 20121230 -9606 724028 MIR658 - MIRN658|hsa-mir-658 HGNC:32914|miRBase:MI0003682 22 22q13.1 microRNA 658 miscRNA MIR658 microRNA 658 O - 20121230 -9606 724029 MIR659 - MIRN659|hsa-mir-659 HGNC:32915|MIM:613556|miRBase:MI0003683 22 22q13.1 microRNA 659 miscRNA MIR659 microRNA 659 O - 20121230 -9606 724030 MIR660 - MIRN660|hsa-mir-660 HGNC:32916|miRBase:MI0003684 X Xp11.23 microRNA 660 miscRNA MIR660 microRNA 660 O - 20121230 -9606 724031 MIR661 - MIRN661|hsa-mir-661 HGNC:32917|MIM:613716|miRBase:MI0003669 8 8q24.3 microRNA 661 miscRNA MIR661 microRNA 661 O - 20121230 -9606 724032 MIR662 - MIRN662|hsa-mir-662 HGNC:32918|miRBase:MI0003670 16 16p13.3 microRNA 662 miscRNA MIR662 microRNA 662 O - 20121230 -9606 724033 MIR663A - MIR663|MIRN663|hsa-mir-663|hsa-mir-663a HGNC:32919|miRBase:MI0003672 20 20p11.1 microRNA 663a miscRNA MIR663A microRNA 663a O - 20121230 -9606 724034 CEND1P2 - - HGNC:43675 13 13q12.12 cell cycle exit and neuronal differentiation 1 pseudogene 2 pseudo CEND1P2 cell cycle exit and neuronal differentiation 1 pseudogene 2 O - 20121230 -9606 724038 BDP1P - - HGNC:31044 18 18q23 B double prime 1 pseudogene pseudo BDP1P B double prime 1 pseudogene O - 20121230 -9606 724058 ANIB4 - - HGNC:31943|MIM:610213 5 5p15.2-p14.3 aneurysm, intracranial berry 4 unknown ANIB4 aneurysm, intracranial berry 4 O - 20120622 -9606 724059 TMEM97P2 - - HGNC:39641 8 8p21.3 transmembrane protein 97 pseudogene 2 pseudo TMEM97P2 transmembrane protein 97 pseudogene 2 O - 20121230 -9606 724060 LOC724060 - - - 1 1p32.3 TRA2A pseudogene pseudo - - - - 20121230 -9606 724065 LOC724065 - - - 10 10q25.2 chromosome 19 open reading frame 53 pseudogene pseudo - - - - 20121230 -9606 724066 ATXN8 - ATXN3 HGNC:32925|MIM:613289 13 13q21 ataxin 8 protein-coding ATXN8 ataxin 8 O ataxin-8|protein 1C2 20121220 -9606 724067 DEFA7P - DEFA7 HGNC:31798 8 8p23.1 defensin, alpha 7 pseudogene pseudo DEFA7P defensin, alpha 7 pseudogene O - 20121230 -9606 724068 DEFA11P - DEFAP3 HGNC:33354 8 8p23.1 defensin, alpha 11 pseudogene pseudo DEFA11P defensin, alpha 11 pseudogene O - 20121230 -9606 724074 DFNY1 - - HGNC:26547|MIM:400043 Y - deafness, Y-linked 1 unknown DFNY1 deafness, Y-linked 1 O - 20120622 -9606 724084 LOC724084 - - - 1 1q42.11 zinc finger protein 706 pseudogene pseudo - - - - 20121230 -9606 724085 LOC724085 - - - 12 12q24.13 immediate early response 3 interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 724087 CXorf31 - - HGNC:17986|Vega:OTTHUMG00000021429 X Xp11.3 chromosome X open reading frame 31 miscRNA CXorf31 chromosome X open reading frame 31 O - 20121230 -9606 724094 FAM27D1 RP11-268E1.4 - HGNC:32015|Vega:OTTHUMG00000013267 9 9p11.2 family with sequence similarity 27, member D1 unknown FAM27D1 family with sequence similarity 27, member D1 O - 20121230 -9606 724097 ZNF723 - - HGNC:32286 19 19p12 zinc finger protein 723 protein-coding ZNF723 zinc finger protein 723 O - 20120318 -9606 724101 SS18L2P2 - - HGNC:44966 18 18q21.2 synovial sarcoma translocation gene on chromosome 18-like 2 pseudogene 2 pseudo SS18L2P2 synovial sarcoma translocation gene on chromosome 18-like 2 pseudogene 2 O - 20121230 -9606 724102 SNHG4 - NCRNA00059|U19H HGNC:32964 5 5q31.2 small nucleolar RNA host gene 4 (non-protein coding) miscRNA SNHG4 small nucleolar RNA host gene 4 (non-protein coding) O - 20121230 -9606 724104 LOC724104 - - - 6 6p12.2 SH3 domain binding glutamic acid-rich protein like 3 pseudogene pseudo - - - - 20121230 -9606 724105 LOC724105 - - - 5 5q35.2 cysteine-rich transmembrane module containing 1 pseudogene pseudo - - - - 20121230 -9606 724107 SPG32 - SPG29 HGNC:32314|MIM:611252 14 14q12-q21 spastic paraplegia 32 (autosomal recessive) unknown SPG32 spastic paraplegia 32 (autosomal recessive) O - 20120622 -9606 724110 SPG34 - - HGNC:32944|MIM:300750 X Xq24-q25 spastic paraplegia 34 (autosomal dominant) unknown SPG34 spastic paraplegia 34 (autosomal dominant) O - 20120715 -9606 727676 SNORD118 - U8 HGNC:32952 17 17p13.1 small nucleolar RNA, C/D box 118 snoRNA SNORD118 small nucleolar RNA, C/D box 118 O - 20121230 -9606 727677 LOC727677 - - - 8 8q24.21 uncharacterized LOC727677 miscRNA - - - - 20121230 -9606 727681 LOC727681 - - - X Xq13.2 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 727682 TAB3-AS1 - CXorf29 HGNC:20176|Vega:OTTHUMG00000021331 X Xp21.2 TAB3 antisense RNA 1 unknown TAB3-AS1 TAB3 antisense RNA 1 O - 20121023 -9606 727684 C1orf195 RP1-21O18.4 - HGNC:32332 1 1p36.21 chromosome 1 open reading frame 195 unknown C1orf195 chromosome 1 open reading frame 195 O - 20121216 -9606 727686 SNURFL RP3-523M5.1 CXorf19 HGNC:29543 X Xq27 SNRPN upstream reading frame-like pseudo SNURFL SNRPN upstream reading frame-like O - 20121230 -9606 727694 PABPC5-AS1 - CXorf46 HGNC:31845|Vega:OTTHUMG00000021960 X Xq21.31 PABPC5 antisense RNA 1 unknown PABPC5-AS1 PABPC5 antisense RNA 1 O - 20121023 -9606 727699 LINC00163 - C21orf134|NCRNA00163|NLC1-A|NLC1A HGNC:33165|MIM:610259 21 21q22.3 long intergenic non-protein coding RNA 163 miscRNA LINC00163 long intergenic non-protein coding RNA 163 O - 20121230 -9606 727701 LINC00165 - C21orf135|NCRNA00165|NLC1-B|NLC1B HGNC:33166 21 21q22.3 long intergenic non-protein coding RNA 165 miscRNA LINC00165 long intergenic non-protein coding RNA 165 O - 20120508 -9606 727703 IGFL1P1 - IGFL-5P HGNC:32956 19 19q13.32 IGF-like family member 1 pseudogene 1 pseudo IGFL1P1 IGF-like family member 1 pseudogene 1 O - 20121230 -9606 727704 IGFL1P2 - IGFL-6P HGNC:32957 19 19q13.32 IGF-like family member 1 pseudogene 2 pseudo IGFL1P2 IGF-like family member 1 pseudogene 2 O - 20121230 -9606 727708 SNORD116-19 - HBII-85-19 HGNC:33085 15 15q11.2 small nucleolar RNA, C/D box 116-19 snoRNA SNORD116-19 small nucleolar RNA, C/D box 116-19 O - 20121230 -9606 727709 LOC727709 - - - 4 4q27 DNA-damage regulated autophagy modulator 1 pseudogene pseudo - - - - 20121230 -9606 727710 LOC727710 - - - 16 16q24.1 uncharacterized LOC727710 miscRNA - - - - 20121017 -9606 727713 LOC727713 - - - 2 2q22.3 methionyl aminopeptidase 2 pseudogene pseudo - - - - 20121230 -9606 727714 SCAX2 - - HGNC:32973|MIM:302600 X - spinocerebellar ataxia, X-linked 2 unknown SCAX2 spinocerebellar ataxia, X-linked 2 O - 20120318 -9606 727715 SCAX3 - - HGNC:32974|MIM:301790 X - spinocerebellar ataxia, X-linked 3 unknown SCAX3 spinocerebellar ataxia, X-linked 3 O - 20120318 -9606 727716 SCAX4 - - HGNC:32975|MIM:301840 X - spinocerebellar ataxia, X-linked 4 unknown SCAX4 spinocerebellar ataxia, X-linked 4 O - 20120318 -9606 727719 SCAR7 - - HGNC:32978|MIM:609270 11 11p15 spinocerebellar ataxia, autosomal recessive 7 unknown SCAR7 spinocerebellar ataxia, autosomal recessive 7 O - 20120622 -9606 727721 LOC727721 - - - 1 1p36.22 uncharacterized LOC727721 unknown - - - - 20121230 -9606 727736 SH3GL1P3 - CNSA-P3|SH3GLP3 HGNC:10837 17 17q24.2 SH3-domain GRB2-like 1 pseudogene 3 pseudo SH3GL1P3 SH3-domain GRB2-like 1 pseudogene 3 O - 20121230 -9606 727738 AREGB - - HGNC:34509|Ensembl:ENSG00000205595|Vega:OTTHUMG00000160870 4 4q13.3 amphiregulin B protein-coding AREGB amphiregulin B O - 20121209 -9606 727747 RPL22P12 - RPL22_6_262 HGNC:36345 2 2q13 ribosomal protein L22 pseudogene 12 pseudo RPL22P12 ribosomal protein L22 pseudogene 12 O - 20121230 -9606 727751 LOC727751 - - - 15 15q25.2 uncharacterized LOC727751 miscRNA - - - - 20121209 -9606 727758 ROCK1P1 - - HGNC:37832 18 18p11.32 Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 pseudo ROCK1P1 Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 O - 20121230 -9606 727764 MAFIP PP5644 MIP|TEKT4P4|pp5644 HGNC:31102 4 - MAFF interacting protein (pseudogene) pseudo MAFIP MAFF interacting protein (pseudogene) O - 20121230 -9606 727768 TEKT4P1 - - HGNC:37711 Y Yq11.1 tektin 4 pseudogene 1 pseudo TEKT4P1 tektin 4 pseudogene 1 O - 20121230 -9606 727775 LOC727775 - - - 3 - uncharacterized LOC727775 unknown - - - - 20120508 -9606 727787 LOC727787 - - - 19 - killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2-like protein-coding - - - - 20121209 -9606 727789 RWDD1P3 - RWDD1L1 HGNC:31794 12 12q21.2 RWD domain containing 1 pseudogene 3 pseudo RWDD1P3 RWD domain containing 1 pseudogene 3 O - 20121230 -9606 727792 RPL31P31 - RPL31_10_468 HGNC:35678 4 4p15.1 ribosomal protein L31 pseudogene 31 pseudo RPL31P31 ribosomal protein L31 pseudogene 31 O - 20121230 -9606 727795 HMGN2P5 - HMGN2L5 HGNC:33568 15 15q13.1 high mobility group nucleosomal binding domain 2 pseudogene 5 pseudo HMGN2P5 high mobility group nucleosomal binding domain 2 pseudogene 5 O - 20121230 -9606 727799 LOC727799 - - - 7 7p22.3 uncharacterized LOC727799 unknown - - - - 20120511 -9606 727800 RNF208 - - HGNC:25420|Ensembl:ENSG00000212864|HPRD:13182 9 9q34.3 ring finger protein 208 protein-coding RNF208 ring finger protein 208 O RING finger protein 208 20121230 -9606 727803 LOC727803 - - - 12 12q21.2 RAN binding protein 1 pseudogene pseudo - - - - 20121230 -9606 727805 POM121L14P - - HGNC:44414 6 6p11.2 POM121 transmembrane nucleoporin-like 14, pseudogene pseudo POM121L14P POM121 transmembrane nucleoporin-like 14, pseudogene O - 20121209 -9606 727808 LOC727808 - - - 15 15q13.1 uncharacterized LOC727808 unknown - - - - 20120511 -9606 727810 RPL21P17 - RPL21_9_342 HGNC:19416 3 3p26.3 ribosomal protein L21 pseudogene 17 pseudo RPL21P17 ribosomal protein L21 pseudogene 17 O - 20121230 -9606 727820 LOC727820 - - - 1 1q21.1 uncharacterized LOC727820 unknown - - - - 20120909 -9606 727821 RPL21P45 - RPL21_15_469 HGNC:35983 4 4p14 ribosomal protein L21 pseudogene 45 pseudo RPL21P45 ribosomal protein L21 pseudogene 45 O - 20121230 -9606 727826 RPS11P5 - RPS11_3_1298 HGNC:36312 12 12q24.33 ribosomal protein S11 pseudogene 5 pseudo RPS11P5 ribosomal protein S11 pseudogene 5 O - 20121230 -9606 727828 TRIM64DP - - HGNC:43974 11 11q14.3 tripartite motif containing 64D, pseudogene pseudo TRIM64DP tripartite motif containing 64D, pseudogene O - 20121230 -9606 727830 SPATA31A3 RP11-395E19.3 FAM75A3 HGNC:32003|Ensembl:ENSG00000147926|Vega:OTTHUMG00000013164 9 9p13.1 SPATA31 subfamily A, member 3 protein-coding SPATA31A3 SPATA31 subfamily A, member 3 O family with sequence similarity 75, member A3|protein FAM75A3 20121216 -9606 727831 RPL13AP8 - RPL13A_2_157 HGNC:36966 1 1q32.1 ribosomal protein L13a pseudogene 8 pseudo RPL13AP8 ribosomal protein L13a pseudogene 8 O - 20121230 -9606 727832 GOLGA6L6 - - HGNC:37225 15 15q11.2 golgin A6 family-like 6 protein-coding GOLGA6L6 golgin A6 family-like 6 O golgi autoantigen, golgin subfamily a, 6-like 6|putative golgin subfamily A member 6-like protein 6 20121230 -9606 727833 IMPDH1P11 - IMPDH1|IMPDHL1 HGNC:6054 16 16p13.2 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 11 pseudo IMPDH1P11 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 11 O - 20121230 -9606 727835 RPL9P16 - RPL9_3_534 HGNC:36851 4 4q32.3 ribosomal protein L9 pseudogene 16 pseudo RPL9P16 ribosomal protein L9 pseudogene 16 O - 20121230 -9606 727837 SSX2B RP13-77O11.9 CT5.2b HGNC:22263|Ensembl:ENSG00000157950|Vega:OTTHUMG00000021593 X Xp11.22 synovial sarcoma, X breakpoint 2B protein-coding SSX2B synovial sarcoma, X breakpoint 2B O CT5.2|HOM-MEL-40|SSX|cancer/testis antigen 5.2|cancer/testis antigen family 5, member 2b|protein SSX2|tumor antigen HOM-MEL-40 20121230 -9606 727838 LOC727838 - - - X Xq24 cancer/testis antigen family 47, member A11 pseudogene pseudo - - - - 20121230 -9606 727842 RBBP4P4 - - HGNC:42371 6 6p11.2 retinoblastoma binding protein 4 pseudogene 4 pseudo RBBP4P4 retinoblastoma binding protein 4 pseudogene 4 O - 20121230 -9606 727849 LOC727849 - - - 15 15q25.2 golgin A2 pseudogene pseudo - - - - 20121230 -9606 727851 RGPD8 - RANBP2L1|RGP8|RanBP2alpha HGNC:9849|MIM:602752|Ensembl:ENSG00000169629|Vega:OTTHUMG00000153289 2 2q13 RANBP2-like and GRIP domain containing 8 protein-coding RGPD8 RANBP2-like and GRIP domain containing 8 O RAN binding protein 2-like 1|RANBP2-like and GRIP domain-containing protein 8|ran-binding protein 2-like 3|ranBP2-like 3|ranBP2L3 20121230 -9606 727856 DDX11L16 - - HGNC:37115 X|Y Xq28; Yq12 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16 pseudo DDX11L16 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16 O - 20121230 -9606 727857 BHLHA9 - BHLHF42 HGNC:35126|Ensembl:ENSG00000205899|Vega:OTTHUMG00000132192 17 17p13.3 basic helix-loop-helix family, member a9 protein-coding BHLHA9 basic helix-loop-helix family, member a9 O class A basic helix-loop-helix protein 9|class F basic helix-loop-helix factor 42|class II basic helix-loop-helix protein 20121230 -9606 727859 C4BPAP1 RP11-164O23.6 C4BPAL1 HGNC:1326 1 1q32.2 complement component 4 binding protein, alpha pseudogene 1 pseudo C4BPAP1 complement component 4 binding protein, alpha pseudogene 1 O - 20121230 -9606 727865 RPL9P32 - RPL9_18_1643 HGNC:36418 19 19q12 ribosomal protein L9 pseudogene 32 pseudo RPL9P32 ribosomal protein L9 pseudogene 32 O - 20121230 -9606 727866 FAM156B PP12994 TMEM29B HGNC:31962|Ensembl:ENSG00000179304|Vega:OTTHUMG00000021594 X Xp11.22 family with sequence similarity 156, member B protein-coding FAM156B family with sequence similarity 156, member B O protein FAM156A|protein FAM156A/FAM156B|transmembrane protein 29|transmembrane protein 29B 20121230 -9606 727874 LOC727874 - - - X Xq21.1 WW domain binding protein 11 pseudogene pseudo - - - - 20121230 -9606 727879 C1DP4 - - HGNC:38028 10 10q22.3 C1D nuclear receptor corepressor pseudogene 4 pseudo C1DP4 C1D nuclear receptor corepressor pseudogene 4 O - 20121230 -9606 727880 LOC727880 - - - 15 15q13.2 uncharacterized LOC727880 unknown - - - - 20120511 -9606 727884 LOC727884 - - - 12 12q12 insulin-like growth factor 2 mRNA binding protein 2 pseudogene pseudo - - - - 20121230 -9606 727896 LOC727896 - - - 18 18p11.31 cysteine and histidine-rich domain (CHORD) containing 1 pseudogene pseudo - - - - 20121230 -9606 727897 MUC5B - MG1|MUC-5B|MUC5|MUC9 HGNC:7516|MIM:600770|Ensembl:ENSG00000117983|Vega:OTTHUMG00000166494 11 11p15.5 mucin 5B, oligomeric mucus/gel-forming protein-coding MUC5B mucin 5B, oligomeric mucus/gel-forming O cervical mucin MUC5B|high molecular weight salivary mucin MG1|mucin 5, subtype B, tracheobronchial|mucin-5B|sublingual gland mucin 20121230 -9606 727905 SPATA31A5 - FAM75A5 HGNC:32005|Ensembl:ENSG00000233788|Vega:OTTHUMG00000013204 9 9p12 SPATA31 subfamily A, member 5 protein-coding SPATA31A5 SPATA31 subfamily A, member 5 O family with sequence similarity 75, member A5|protein FAM75A5 20121230 -9606 727909 GOLGA8Q - - HGNC:44408 15 15q13.2 golgin A8 family, member Q pseudo GOLGA8Q golgin A8 family, member Q O - 20121230 -9606 727910 TLCD2 - - HGNC:33522|Ensembl:ENSG00000185561|Vega:OTTHUMG00000132477 17 17p13.3 TLC domain containing 2 protein-coding TLCD2 TLC domain containing 2 O TLC domain-containing protein 2 20121230 -9606 727914 LOC727914 - - - 15 15q11.2 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121209 -9606 727915 LOC727915 - - - 15 15q25.3 uncharacterized LOC727915 miscRNA - - - - 20121230 -9606 727916 LOC727916 - - - 6 6q12 uncharacterized LOC727916 unknown - - - - 20120511 -9606 727919 LOC727919 hCG_1795065 - - 2 2p24.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 pseudogene pseudo - - - - 20121230 -9606 727924 LOC727924 - - - 15 15q11.2 uncharacterized LOC727924 miscRNA - - - - 20121230 -9606 727925 LOC727925 hCG_2031213 - - 6 6q12 hCG2031213 protein-coding - - - - 20120511 -9606 727930 LOC727930 - - - 5 5q11.2 chondroitin sulfate proteoglycan 4-like pseudo - - - - 20121230 -9606 727936 GXYLT2 - GLT8D4 HGNC:33383|MIM:613322|Ensembl:ENSG00000172986|Vega:OTTHUMG00000158815 3 3p13 glucoside xylosyltransferase 2 protein-coding GXYLT2 glucoside xylosyltransferase 2 O glycosyltransferase 8 domain containing 4|glycosyltransferase 8 domain-containing protein 4 20121230 -9606 727940 RHOXF2B - - HGNC:33519|Ensembl:ENSG00000203989|Vega:OTTHUMG00000022288 X Xq24 Rhox homeobox family, member 2B protein-coding RHOXF2B Rhox homeobox family, member 2B O rhox homeobox family member 2B 20121230 -9606 727941 LOC727941 - - - 1 1p13.3 uncharacterized LOC727941 pseudo - - - - 20121230 -9606 727944 LOC727944 - - - 2 2p25.3 uncharacterized LOC727944 miscRNA - - - - 20121209 -9606 727947 LOC727947 - - - 5 5q33.3 ubiquinol-cytochrome c reductase binding protein pseudogene pseudo - - - - 20121230 -9606 727951 RPS3AP16 - RPS3A_3_456 HGNC:36052 4 4p16.3 ribosomal protein S3a pseudogene 16 pseudo RPS3AP16 ribosomal protein S3a pseudogene 16 O - 20121230 -9606 727956 SDHAP2 - SDHAL2|SDHALP2 HGNC:27408 3 3q29 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 pseudo SDHAP2 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 O - 20121230 -9606 727957 MROH1 - HEATR7A HGNC:26958|Ensembl:ENSG00000179832|Vega:OTTHUMG00000165781 8 8q24.3 maestro heat-like repeat family member 1 protein-coding MROH1 maestro heat-like repeat family member 1 O HEAT repeat containing 7A|HEAT repeat-containing protein 7A 20121230 -9606 727961 LOC727961 hCG_1776047 - - 18 18q21.2 hCG1776047 protein-coding - - - - 20120511 -9606 727964 LOC727964 - - - 16 16p11.1 chromosome 2 open reading frame 69 pseudogene pseudo - - - - 20121230 -9606 727967 LOC727967 - - - 8 8q24.3 block of proliferation 1 pseudogene pseudo - - - - 20121230 -9606 727969 TSPY16P - - HGNC:37712 Y Yp11.2 testis specific protein, Y-linked 16, pseudogene pseudo TSPY16P testis specific protein, Y-linked 16, pseudogene O - 20121230 -9606 727970 RPS3AP43 - RPS3A_21_1203 HGNC:36684 12 12p13.31 ribosomal protein S3a pseudogene 43 pseudo RPS3AP43 ribosomal protein S3a pseudogene 43 O - 20121230 -9606 727978 LOC727978 - - - 3 3q29 uncharacterized LOC727978 pseudo - - - - 20121209 -9606 727980 LOC727980 - - - 14 14q11.2 translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 727982 LOC727982 - - - 2 2p25.2 uncharacterized LOC727982 miscRNA - - - - 20121230 -9606 727983 LOC727983 - - - 22 22q11.21 putative POM121-like protein 1-like unknown - - - - 20121230 -9606 727984 RPL17P22 - RPL17_13_564 HGNC:35761 5 5q11.2 ribosomal protein L17 pseudogene 22 pseudo RPL17P22 ribosomal protein L17 pseudogene 22 O - 20121230 -9606 727987 FAM207CP - - HGNC:42676 21 21q11.2 family with sequence similarity 207, member C pseudo FAM207CP family with sequence similarity 207, member C O - 20121230 -9606 727991 SLC35E1P1 - - HGNC:42046 13 13q12.11 solute carrier family 35, member E1 pseudogene 1 pseudo SLC35E1P1 solute carrier family 35, member E1 pseudogene 1 O - 20121230 -9606 727993 LOC727993 - - - 20 20p13 uncharacterized LOC727993 unknown - - - - 20120511 -9606 727997 RPS12P9 - RPS12_3_484 HGNC:36719 4 4q13.1 ribosomal protein S12 pseudogene 9 pseudo RPS12P9 ribosomal protein S12 pseudogene 9 O - 20121230 -9606 728002 RPL15P17 - RPL15_10_1204 HGNC:36852 12 12p13.31 ribosomal protein L15 pseudogene 17 pseudo RPL15P17 ribosomal protein L15 pseudogene 17 O - 20121230 -9606 728005 CTGLF9P - bA548K23.1 HGNC:23499 10 10q11.22 centaurin, gamma-like family, member 9 pseudogene pseudo CTGLF9P centaurin, gamma-like family, member 9 pseudogene O - 20121209 -9606 728008 C11orf89 - - HGNC:35118 11 11p15.5 chromosome 11 open reading frame 89 unknown C11orf89 chromosome 11 open reading frame 89 O - 20121021 -9606 728010 RPL35P3 - RPL35_2_728 HGNC:35488 6 6q21 ribosomal protein L35 pseudogene 3 pseudo RPL35P3 ribosomal protein L35 pseudogene 3 O - 20121230 -9606 728012 LOC728012 - - - 6 6q16.3 uncharacterized LOC728012 miscRNA - - - - 20121230 -9606 728013 CBWD7 - - HGNC:31977|Ensembl:ENSG00000215126|Vega:OTTHUMG00000067194 9 9p12 COBW domain containing 7 protein-coding CBWD7 COBW domain containing 7 O putative COBW domain-containing protein 7|putative cobalamin synthase W domain-containing protein 7 20121209 -9606 728015 LOC728015 - - - 4 4p16.3-p16.2 ribosomal protein S7 pseudogene pseudo - - - - 20121230 -9606 728019 LOC728019 - - - 4 4q13.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 728022 DUX4L14 XX-2136C48.5 - HGNC:38673 10 10q26.3 double homeobox 4 like 14 pseudo DUX4L14 double homeobox 4 like 14 O - 20121209 -9606 728023 H2AFZP3 RP11-461N23.3 - HGNC:38013 13 13q32.3 H2A histone family, member Z pseudogene 3 pseudo H2AFZP3 H2A histone family, member Z pseudogene 3 O - 20121230 -9606 728024 LOC728024 hCG_1640171 - - 8 8p11.23 chromosome X open reading frame 56 pseudogene pseudo - - - - 20121230 -9606 728026 LOC728026 - - - 9 9q22.32 prothymosin alpha-like protein-coding - - - - 20121209 -9606 728034 LOC728034 - - - 9 9p12 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121209 -9606 728036 CT47A10 RP6-166C19.10 CT47|CT47.10 HGNC:33291|MIM:300789|Ensembl:ENSG00000224089|Vega:OTTHUMG00000022309 X Xq24 cancer/testis antigen family 47, member A10 protein-coding CT47A10 cancer/testis antigen family 47, member A10 O cancer/testis CT47 family, member 10|cancer/testis antigen 47|cancer/testis antigen 47A 20121209 -9606 728039 SSR4P1 hCG_401283 C21orf122|PRED57|PRED90 HGNC:23131 21 21q22.3 signal sequence receptor, delta pseudogene 1 pseudo SSR4P1 signal sequence receptor, delta pseudogene 1 O - 20121230 -9606 728040 LOC728040 hCG_1813624 - - 4 4q13.3 hCG1813624 miscRNA - - - - 20121230 -9606 728042 CT47A9 RP6-166C19.9 CT47.9 HGNC:33290|MIM:300788|Ensembl:ENSG00000226600|Vega:OTTHUMG00000022319 X Xq24 cancer/testis antigen family 47, member A9 protein-coding CT47A9 cancer/testis antigen family 47, member A9 O cancer/testis CT47 family, member 9|cancer/testis antigen 47A 20121212 -9606 728045 PPBPP1 - PPBPL1|TGB2 HGNC:9241|MIM:188035 4 4q13.3 pro-platelet basic protein pseudogene 1 pseudo PPBPP1 pro-platelet basic protein pseudogene 1 O - 20121230 -9606 728047 GOLGA8O - - HGNC:44406|Ensembl:ENSG00000206127|Vega:OTTHUMG00000162878 15 15q13.3 golgin A8 family, member O protein-coding GOLGA8O golgin A8 family, member O O golgin subfamily A member 8-like protein 2-like 20121209 -9606 728048 LOC728048 - - - 4 4q13.2 interferon induced transmembrane protein pseudogene pseudo - - - - 20121230 -9606 728049 CT47A8 - CT47.8 HGNC:33289|MIM:300787|Ensembl:ENSG00000230347|Vega:OTTHUMG00000022318 X Xq24 cancer/testis antigen family 47, member A8 protein-coding CT47A8 cancer/testis antigen family 47, member A8 O cancer/testis CT47 family, member 8|cancer/testis antigen 47A 20121212 -9606 728053 BMS1P1 RP11-556L1.4 BMS1LP1|bA556L1.3 HGNC:23649|Vega:OTTHUMG00000018098 10 10q11.22 BMS1 pseudogene 1 pseudo BMS1P1 BMS1 pseudogene 1 O - 20121230 -9606 728056 LOC728056 - - - 20 20q13.33 IQ motif and Sec7 domain 3 pseudogene pseudo - - - - 20121230 -9606 728061 LOC728061 hCG_2003663 - - 9 9q22.32 hCG2003663 unknown - - - - 20120511 -9606 728062 CT47A6 RP6-166C19.6 CT47.6 HGNC:33287|MIM:300785|Ensembl:ENSG00000226023|Vega:OTTHUMG00000022316 X Xq24 cancer/testis antigen family 47, member A6 protein-coding CT47A6 cancer/testis antigen family 47, member A6 O cancer/testis CT47 family, member 6|cancer/testis antigen 47A 20121212 -9606 728064 LOC728064 - - - 10 10q11.21 cubilin (intrinsic factor-cobalamin receptor) pseudogene pseudo - - - - 20121230 -9606 728065 LOC728065 - - - 10 10q26.2 uncharacterized LOC728065 protein-coding - - - - 20121209 -9606 728066 FAM133DP - - HGNC:44192 2 2q24.1 family with sequence similarity 133, member A pseudogene pseudo FAM133DP family with sequence similarity 133, member D, pseudogene O - 20121230 -9606 728071 FAM203B - BRP16L|C8orf30B HGNC:32323|Ensembl:ENSG00000230567|Vega:OTTHUMG00000165109 8 8q24.3 family with sequence similarity 203, member B protein-coding FAM203B family with sequence similarity 203, member B O protein FAM203B 20121230 -9606 728072 CT47A5 RP6-166C19.5 CT47.5 HGNC:33286|MIM:300784|Ensembl:ENSG00000237957|Vega:OTTHUMG00000022315 X Xq24 cancer/testis antigen family 47, member A5 protein-coding CT47A5 cancer/testis antigen family 47, member A5 O CT47|cancer/testis CT47 family, member 5|cancer/testis antigen 47|cancer/testis antigen 47A 20121209 -9606 728073 LOC728073 - - - 17 17q25.1 uncharacterized LOC728073 unknown - - - - 20120511 -9606 728075 CT47A4 RP6-166C19.4 CT47.4 HGNC:33285|MIM:300783|Ensembl:ENSG00000230594|Vega:OTTHUMG00000022314 X Xq24 cancer/testis antigen family 47, member A4 protein-coding CT47A4 cancer/testis antigen family 47, member A4 O cancer/testis CT47 family, member 4|cancer/testis antigen 47A 20121212 -9606 728081 LINC00290 hCG_2025798 NCRNA00290 HGNC:38515 4 4q34.3 long intergenic non-protein coding RNA 290 miscRNA LINC00290 long intergenic non-protein coding RNA 290 O - 20121230 -9606 728082 CT47A3 RP6-166C19.3 CT47.3 HGNC:33284|MIM:300782|Ensembl:ENSG00000236126|Vega:OTTHUMG00000022313 X Xq24 cancer/testis antigen family 47, member A3 protein-coding CT47A3 cancer/testis antigen family 47, member A3 O cancer/testis CT47 family, member 3|cancer/testis antigen 47A 20121212 -9606 728084 LOC728084 - - - 12 12q21.33 uncharacterized LOC728084 miscRNA - - - - 20121230 -9606 728088 RPL15P18 - RPL15_5_1331 HGNC:36515 13 13q32.3 ribosomal protein L15 pseudogene 18 pseudo RPL15P18 ribosomal protein L15 pseudogene 18 O - 20121230 -9606 728090 CT47A2 RP6-166C19.2 CT47.2 HGNC:33283|MIM:300781|Ensembl:ENSG00000242362|Vega:OTTHUMG00000022312 X Xq24 cancer/testis antigen family 47, member A2 protein-coding CT47A2 cancer/testis antigen family 47, member A2 O cancer/testis CT47 family, member 2|cancer/testis antigen 47A 20121212 -9606 728093 LOC728093 - - - 5 5q21.1 putative POM121-like protein 1-like unknown - - - - 20121230 -9606 728095 LOC728095 - - - 5 5q34 uncharacterized LOC728095 unknown - - - - 20121230 -9606 728096 CT47A1 RP6-166C19.1 CT47.1 HGNC:33282|MIM:300780|Ensembl:ENSG00000236371|Vega:OTTHUMG00000022311 X Xq24 cancer/testis antigen family 47, member A1 protein-coding CT47A1 cancer/testis antigen family 47, member A1 O cancer/testis CT47 family, member 1|cancer/testis antigen 47A 20121212 -9606 728097 FAM8A2P - - HGNC:16373 11 11q12.1 family with sequence similarity 8, member A1 pseudogene pseudo FAM8A2P family with sequence similarity 8, member A2 pseudogene O - 20121230 -9606 728098 LOC728098 - - - 6 6q16.3 mitogen-activated protein kinase 1 interacting protein 1-like pseudogene pseudo - - - - 20121230 -9606 728099 LOC728099 - - - 13 13q12.11 uncharacterized LOC728099 unknown - - - - 20120511 -9606 728100 LOC728100 - - - 3 3q29 uncharacterized LOC728100 protein-coding - - - - 20120318 -9606 728106 RPL23AP50 - RPL23A_20_731 HGNC:35958 6 6q21 ribosomal protein L23a pseudogene 50 pseudo RPL23AP50 ribosomal protein L23a pseudogene 50 O - 20121230 -9606 728111 HMGN1P31 hCG_1659830 - HGNC:39375 18 18q21.32 high mobility group nucleosome binding domain 1 pseudogene 31 pseudo HMGN1P31 high mobility group nucleosome binding domain 1 pseudogene 31 O - 20121230 -9606 728113 ANXA8L1 RP11-144G6.1 ANXA8|bA301J7.3 HGNC:23334|Ensembl:ENSG00000150165|Vega:OTTHUMG00000018114 10 10q11.22 annexin A8-like 1 protein-coding ANXA8L1 annexin A8-like 1 O VAC-beta|annexin A8-like protein 1|annexin VIII|annexin-8|vascular anticoagulant-beta 20121230 -9606 728114 LOC728114 - - - 12 12q13.11 uncharacterized LOC728114 unknown - - - - 20121117 -9606 728115 FAM60CP - - HGNC:31737 18 18q21.32 family with sequence similarity 60, member C pseudogene pseudo FAM60CP family with sequence similarity 60, member C pseudogene O - 20121230 -9606 728116 ZBTB8B - RP1-27O5.1|ZNF916B HGNC:37057|Ensembl:ENSG00000215897|Vega:OTTHUMG00000167087 1 1p35.1 zinc finger and BTB domain containing 8B protein-coding ZBTB8B zinc finger and BTB domain containing 8B O putative zinc finger and BTB domain-containing protein 8B|zinc finger and BTB domain-containing protein 8B 20121230 -9606 728118 FAM22A RP11-322M19.3 - HGNC:23438|Ensembl:ENSG00000184923|Vega:OTTHUMG00000018670 10 10q23.2 family with sequence similarity 22, member A protein-coding FAM22A family with sequence similarity 22, member A O protein FAM22A 20121230 -9606 728121 LOC728121 - - - 15 15q25.3 chondroitin sulfate proteoglycan 4 pseudogene pseudo - - - - 20121230 -9606 728126 RPSAP30 - RPSA_7_452 HGNC:35861 3 3q29 ribosomal protein SA pseudogene 30 pseudo RPSAP30 ribosomal protein SA pseudogene 30 O - 20121230 -9606 728127 AGAP10 - CTGLF7|bA144G6.2 HGNC:23462|Ensembl:ENSG00000204172|Vega:OTTHUMG00000018115 10 10q11.22 ArfGAP with GTPase domain, ankyrin repeat and PH domain 10 protein-coding AGAP10 ArfGAP with GTPase domain, ankyrin repeat and PH domain 10 O centaurin, gamma-like family, member 7 20121230 -9606 728128 RPL7AP26 - RPL7A_8_496 HGNC:36815 4 4q21.22 ribosomal protein L7a pseudogene 26 pseudo RPL7AP26 ribosomal protein L7a pseudogene 26 O - 20121230 -9606 728130 FAM22D RP11-157H10.1 - HGNC:23447|Ensembl:ENSG00000214562|Vega:OTTHUMG00000018672 10 10q23.2 family with sequence similarity 22, member D protein-coding FAM22D family with sequence similarity 22, member D O protein FAM22D 20121230 -9606 728131 RPS6P6 - - - 4 4q21.22 ribosomal protein S6 pseudogene pseudo - - - - 20121230 -9606 728132 TSPY9P - TSPY9 HGNC:37472 Y Yp11.2 testis specific protein, Y-linked 9, pseudogene pseudo TSPY9P testis specific protein, Y-linked 9, pseudogene O - 20121209 -9606 728134 RPL23AP18 RP11-384C4.3 RPL23A_3_161 HGNC:36726 1 1q32.3 ribosomal protein L23a pseudogene 18 pseudo RPL23AP18 ribosomal protein L23a pseudogene 18 O - 20121230 -9606 728137 TSPY3 - - HGNC:33876|Ensembl:ENSG00000228927|Vega:OTTHUMG00000041535 Y Yp11.2 testis specific protein, Y-linked 3 protein-coding TSPY3 testis specific protein, Y-linked 3 O testis-specific Y-encoded protein 3 20121209 -9606 728138 LOC728138 - - - 16 16p13.11 KIAA2013 pseudogene pseudo - - - - 20121230 -9606 728139 RPL7AP70 - RPL7A_32_1739 HGNC:36752 22 22q11.21 ribosomal protein L7a pseudogene 70 pseudo RPL7AP70 ribosomal protein L7a pseudogene 70 O - 20121230 -9606 728143 CHCHD4P4 - - HGNC:44492 3 3p25.3 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 4 pseudo CHCHD4P4 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 4 O - 20121230 -9606 728145 LOC728145 - - - 5 5q35.1 uncharacterized LOC728145 unknown - - - - 20121230 -9606 728147 LOC728147 - - - 12 12p13.33 uncharacterized LOC728147 unknown - - - - 20120909 -9606 728157 ANKRD20A6P - - HGNC:37714 Y Yq11.1 ankyrin repeat domain 20 family, member A6, pseudogene pseudo ANKRD20A6P ankyrin repeat domain 20 family, member A6, pseudogene O - 20121209 -9606 728158 LOC728158 hCG_2044975 - - 10 10q26.2 hCG2044975 unknown - - - - 20120511 -9606 728162 ST13P11 - - HGNC:38746 11 11q21 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 11 pseudo ST13P11 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 11 O - 20121230 -9606 728167 KRT8P31 - - HGNC:39865 5 5q12.1 keratin 8 pseudogene 31 pseudo KRT8P31 keratin 8 pseudogene 31 O - 20121230 -9606 728169 DUX4L16 - DUXY1 HGNC:37719 Y Yq11.21 double homeobox 4 like 16 pseudo DUX4L16 double homeobox 4 like 16 O - 20121230 -9606 728170 LOC728170 - - - 12 12q22 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 728175 LOC728175 - - - 4 4q35.1 uncharacterized LOC728175 miscRNA - - - - 20121230 -9606 728178 LOC728178 - - - 5 5p15.2 uncharacterized LOC728178 unknown - - - - 20120511 -9606 728179 RPL7AP36 - RPL7A_9_655 HGNC:36356 6 6p24.3 ribosomal protein L7a pseudogene 36 pseudo RPL7AP36 ribosomal protein L7a pseudogene 36 O - 20121230 -9606 728190 LOC728190 - - - 10 10q23.2 uncharacterized LOC728190 miscRNA - - - - 20121230 -9606 728192 LINC00460 - - HGNC:42809 13 13q33.3 long intergenic non-protein coding RNA 460 miscRNA LINC00460 long intergenic non-protein coding RNA 460 O - 20121230 -9606 728194 RSPH10B2 - - HGNC:34385|Ensembl:ENSG00000169402|Vega:OTTHUMG00000151856 7 7p22.1 radial spoke head 10 homolog B2 (Chlamydomonas) protein-coding RSPH10B2 radial spoke head 10 homolog B2 (Chlamydomonas) O radial spoke head 10 homolog B 20121230 -9606 728195 LOC728195 - - - 9 9p11.2 fibroblast growth factor 7 pseudogene pseudo - - - - 20121230 -9606 728196 LOC728196 - - - 11 11q23.1 uncharacterized LOC728196 unknown - - - - 20120508 -9606 728202 RPL36AP7 hCG_1789827 RPL36A_24_1574 HGNC:31328 17 17q25.1 ribosomal protein L36a pseudogene 7 pseudo RPL36AP7 ribosomal protein L36a pseudogene 7 O - 20121230 -9606 728207 RPL23AP75 - RPL23A_32_1546 HGNC:35975 17 17q21.2 ribosomal protein L23a pseudogene 75 pseudo RPL23AP75 ribosomal protein L23a pseudogene 75 O - 20121230 -9606 728208 LOC728208 - - - 2 2q37.3 uncharacterized LOC728208 unknown - - - - 20121230 -9606 728215 FAM155A - - HGNC:33877|Ensembl:ENSG00000204442|Vega:OTTHUMG00000017326 13 13q33.3 family with sequence similarity 155, member A protein-coding FAM155A family with sequence similarity 155, member A O transmembrane protein FAM155A 20121230 -9606 728218 LOC728218 - - - 10 10q23.2 uncharacterized LOC728218 miscRNA - - - - 20121230 -9606 728224 KRTAP4-8 hCG_2042992 KAP4.8|KRTAP4.8 HGNC:17230|Ensembl:ENSG00000204880|Vega:OTTHUMG00000133580 17 17q21.2 keratin associated protein 4-8 protein-coding KRTAP4-8 keratin associated protein 4-8 O keratin associated protein 4.8|keratin-associated protein 4-8|keratin-associated protein 4.8|ultrahigh sulfur keratin-associated protein 4.8 20121230 -9606 728226 GGTLC3 - GGT HGNC:33426|MIM:612340 22 22q11.21 gamma-glutamyltransferase light chain 3 pseudo GGTLC3 gamma-glutamyltransferase light chain 3 O - 20121230 -9606 728228 LOC728228 hCG_2045830 - - 20 20p13 uncharacterized LOC728228 miscRNA - - - - 20121230 -9606 728229 TMEM191B - - HGNC:33600 22 22q11.21 transmembrane protein 191B protein-coding TMEM191B transmembrane protein 191B O - 20121230 -9606 728231 UBTFL5 - - HGNC:35405 2 2q11.1 upstream binding transcription factor, RNA polymerase I-like 5 (pseudogene) pseudo UBTFL5 upstream binding transcription factor, RNA polymerase I-like 5 (pseudogene) O - 20121209 -9606 728233 PI4KAP1 - - HGNC:33576 22 22q11.21 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 pseudo PI4KAP1 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 O - 20121230 -9606 728234 HMGN2P16 - HMGN2L HGNC:31330 9 9p22.3 high mobility group nucleosomal binding domain 2 pseudogene 16 pseudo HMGN2P16 high mobility group nucleosomal binding domain 2 pseudogene 16 O - 20121230 -9606 728239 MAGED4 hCG_32481 MAGE-E1|MAGE1|MAGEE1 HGNC:23793|MIM:300702|Ensembl:ENSG00000154545|Vega:OTTHUMG00000042235 X Xp11.22 melanoma antigen family D, 4 protein-coding MAGED4 melanoma antigen family D, 4 O MAGE-D4 antigen|MAGE-E1 antigen|melanoma-associated antigen D4 20121230 -9606 728242 XAGE2B CTD-2267G17.3 - HGNC:30680 X Xp11.22 X antigen family, member 2B protein-coding XAGE2B X antigen family, member 2B O CT12.2|G antigen family D member 3|cancer/testis antigen 12.2|protein XAGE-2 20121104 -9606 728244 RPS12P29 - RPS12_15_1507 HGNC:36206 17 17p13.2 ribosomal protein S12 pseudogene 29 pseudo RPS12P29 ribosomal protein S12 pseudogene 29 O - 20121230 -9606 728247 LOC728247 - - - 3 3q29 putative tubulin beta chain-like protein ENSP00000290377-like pseudo - - - - 20121209 -9606 728248 ABCB10P3 - - HGNC:31129 15 15q13.1 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 3 pseudo ABCB10P3 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 3 O - 20121230 -9606 728254 LOC728254 - - - 5 5q22.3 uncharacterized LOC728254 unknown - - - - 20120508 -9606 728255 KRTAP1-4 - KAP1.4|KRTAP1.4 HGNC:18904|MIM:608821|Ensembl:ENSG00000204887|Vega:OTTHUMG00000133631 17 17q21.2 keratin associated protein 1-4 protein-coding KRTAP1-4 keratin associated protein 1-4 O high sulfur keratin-associated protein 1.4|keratin-associated protein 1-4|keratin-associated protein 1.4 20121230 -9606 728262 FAM157A - - HGNC:34079|Ensembl:ENSG00000236438 3 3q29 family with sequence similarity 157, member A protein-coding FAM157A family with sequence similarity 157, member A O putative protein FAM157A 20121230 -9606 728263 ALG1L7P - - HGNC:44376 4 4p16.3 asparagine-linked glycosylation 1-like 7, pseudogene pseudo ALG1L7P asparagine-linked glycosylation 1-like 7, pseudogene O - 20121230 -9606 728264 MIR143HG - - HGNC:42872 5 5q32 MIR143 host gene (non-protein coding) miscRNA MIR143HG MIR143 host gene (non-protein coding) O - 20121230 -9606 728269 MAGEA9B - - HGNC:31909|MIM:300764|Ensembl:ENSG00000123584|Vega:OTTHUMG00000022621 X Xq28 melanoma antigen family A, 9B protein-coding MAGEA9B melanoma antigen family A, 9B O CT1.9|MAGE-9 antigen|cancer/testis antigen 1.9|melanoma-associated antigen 9 20121230 -9606 728276 CLEC19A UNQ5810/PRO19627 - HGNC:34522 16 16p12.3 C-type lectin domain family 19, member A protein-coding CLEC19A C-type lectin domain family 19, member A O C-type lectin domain family 19 member A 20121230 -9606 728279 KRTAP2-2 - KAP2.2 HGNC:18905|Ensembl:ENSG00000214518|Vega:OTTHUMG00000133593 17 17q21.2 keratin associated protein 2-2 protein-coding KRTAP2-2 keratin associated protein 2-2 O putative keratin-associated protein ENSP00000381495 20121230 -9606 728283 FLJ33544 - - - 20 20p12.3 uncharacterized LOC728283 unknown - - - - 20120909 -9606 728287 LOC728287 - - - 5 5q33.1 uncharacterized LOC728287 unknown - - - - 20120511 -9606 728290 LOC728290 - - - 3 3p12.2 uncharacterized LOC728290 miscRNA - - - - 20121209 -9606 728294 D2HGDH hCG_31745 D2HGD HGNC:28358|MIM:609186|Ensembl:ENSG00000180902|HPRD:14502|Vega:OTTHUMG00000151474 2 2q37.3 D-2-hydroxyglutarate dehydrogenase protein-coding D2HGDH D-2-hydroxyglutarate dehydrogenase O D-2-hydroxyglutarate dehydrogenase, mitochondrial 20121230 -9606 728299 KRTAP19-8 - - HGNC:33898|Ensembl:ENSG00000206102|Vega:OTTHUMG00000057787 21 21q22.11 keratin associated protein 19-8 protein-coding KRTAP19-8 keratin associated protein 19-8 O keratin-associated protein 19-8 20121230 -9606 728300 KRT18P5 - - HGNC:19259 22 22q11.21 keratin 18 pseudogene 5 pseudo KRT18P5 keratin 18 pseudogene 5 O - 20121230 -9606 728307 LOC728307 - - - X Xq28 melanoma associated antigen (mutated) 1-like 1 pseudogene pseudo - - - - 20121209 -9606 728310 GOLGA6L7P - GOLGA6L7 HGNC:37442 15 15q13.1 golgin A6 family-like 7, pseudogene pseudo GOLGA6L7P golgin A6 family-like 7, pseudogene O - 20121230 -9606 728311 RPL26P24 - RPL26_12_861 HGNC:35774 7 7q35 ribosomal protein L26 pseudogene 24 pseudo RPL26P24 ribosomal protein L26 pseudogene 24 O - 20121230 -9606 728315 RPL7AP31 - RPL7A_7_480 HGNC:36857 4 4q12 ribosomal protein L7a pseudogene 31 pseudo RPL7AP31 ribosomal protein L7a pseudogene 31 O - 20121230 -9606 728317 LOC728317 - - - X Xq28 melanoma associated antigen (mutated) 1-like 1 pseudogene pseudo - - - - 20121230 -9606 728318 KRTAP9-1 - KAP9.1|KRTAP9L3 HGNC:18912|Ensembl:ENSG00000240542|Vega:OTTHUMG00000133636 17 17q21.2 keratin associated protein 9-1 protein-coding KRTAP9-1 keratin associated protein 9-1 O Putative keratin-associated protein 9-2-like 3|keratin associated protein 9-like 3|keratin-associated protein 9-1 20121230 -9606 728323 LOC728323 - - - 2 2q37.3 uncharacterized LOC728323 miscRNA - - - - 20121230 -9606 728324 CHCHD2P2 - - HGNC:39586 5 5q13.2 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 2 pseudo CHCHD2P2 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 2 O - 20121230 -9606 728325 HMGN1P21 - - HGNC:39365 11 11p15.4 high mobility group nucleosome binding domain 1 pseudogene 21 pseudo HMGN1P21 high mobility group nucleosome binding domain 1 pseudogene 21 O - 20121230 -9606 728327 LOC728327 hCG_1795091 - - 10 10q26.3 hCG1795091 unknown - - - - 20120511 -9606 728333 LOC728333 - - - 4 4q22.1 nuclear receptor coactivator 4 pseudogene pseudo - - - - 20121230 -9606 728339 LOC728339 - - - 4 4q35.2 uncharacterized LOC728339 unknown - - - - 20120511 -9606 728340 GTF2H2C - - HGNC:31394|Ensembl:ENSG00000183474|Vega:OTTHUMG00000162365 5 5q13.2 general transcription factor IIH, polypeptide 2C protein-coding GTF2H2C general transcription factor IIH, polypeptide 2C O general transcription factor IIH polypeptide 2-like protein|general transcription factor IIH subunit 2-like protein 20121230 -9606 728342 LOC728342 - - - 5 5q23.1 uncharacterized LOC728342 miscRNA - - - - 20121230 -9606 728343 NXF2B RP11-353J17.1 bA353J17.1 HGNC:23984|Ensembl:ENSG00000185945|Vega:OTTHUMG00000154920 X Xq22.1 nuclear RNA export factor 2B protein-coding NXF2B nuclear RNA export factor 2B O TAP-like protein 2|cancer/testis antigen 39|nuclear RNA export factor 2 20121230 -9606 728344 LOC728344 - - - 6 6p25.2 glutaredoxin 3 pseudogene pseudo - - - - 20121230 -9606 728350 EIF2S2P4 - - HGNC:37626 2 2q31.1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 4 pseudo EIF2S2P4 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 4 O - 20121230 -9606 728353 LOC728353 - - - 14 14q11.2 uncharacterized LOC728353 unknown - - - - 20121018 -9606 728358 DEFA1B - HNP-1|HP-1|HP1 HGNC:33596|Ensembl:ENSG00000240247|Vega:OTTHUMG00000149850 8 8p23.1 defensin, alpha 1B protein-coding DEFA1B defensin, alpha 1B O neutrophil defensin 1 20121209 -9606 728361 OVOL3 - - HGNC:14186|Ensembl:ENSG00000105261|Vega:OTTHUMG00000181748 19 19q13.12 ovo-like 3 (Drosophila) protein-coding OVOL3 ovo-like 3 (Drosophila) O OVO homolog-like 3|putative transcription factor ovo-like protein 3 20121230 -9606 728365 RPL6P16 - RPL6_12_538 HGNC:35674 4 4q35.1 ribosomal protein L6 pseudogene 16 pseudo RPL6P16 ribosomal protein L6 pseudogene 16 O - 20121230 -9606 728366 LOC728366 - - - 5 5q22.1 BCL2-associated transcription factor 1 pseudogene pseudo - - - - 20121230 -9606 728369 USP17L24 - - HGNC:44453|Ensembl:ENSG00000232264|Vega:OTTHUMG00000160201 4 4p16.1 ubiquitin specific peptidase 17-like family member 24 protein-coding USP17L24 ubiquitin specific peptidase 17-like family member 24 O - 20121209 -9606 728373 USP17L25 - - HGNC:44452|Ensembl:ENSG00000230430|Vega:OTTHUMG00000160192 4 4p16.1 ubiquitin specific peptidase 17-like family member 25 protein-coding USP17L25 ubiquitin specific peptidase 17-like family member 25 O - 20121209 -9606 728374 RPL9P21 - RPL9_8_1037 HGNC:35886 10 10q11.21 ribosomal protein L9 pseudogene 21 pseudo RPL9P21 ribosomal protein L9 pseudogene 21 O - 20121230 -9606 728375 LOC728375 - - - 2 2q24.3 uncharacterized LOC728375 protein-coding - - - - 20120710 -9606 728376 LOC728376 - - - 7 7p11.2 zinc finger protein pseudogene pseudo - - - - 20121230 -9606 728377 LOC728377 - - - 7 7q35 Rho guanine nucleotide exchange factor (GEF) 5 pseudogene pseudo - - - - 20121230 -9606 728378 POTEF - A26C1B|ACTB|POTE2alpha|POTEACTIN HGNC:33905|Ensembl:ENSG00000196604|Vega:OTTHUMG00000153628 2 2q21.1 POTE ankyrin domain family, member F protein-coding POTEF POTE ankyrin domain family, member F O ANKRD26-like family C member 1B|ANKRD26-like family C, member 1B|POTE ankyrin domain family member F|POTE-2 alpha-actin|beta actin|chimeric POTE-actin protein|prostate, ovary, testis expressed protein on chromosome 2 20121230 -9606 728379 USP17L26 - - HGNC:44454|Ensembl:ENSG00000229579|Vega:OTTHUMG00000160189 4 4p16.1 ubiquitin specific peptidase 17-like family member 26 protein-coding USP17L26 ubiquitin specific peptidase 17-like family member 26 O - 20121230 -9606 728380 RPL7P26 - RPL7_9_661 HGNC:36630 6 6p22.3 ribosomal protein L7 pseudogene 26 pseudo RPL7P26 ribosomal protein L7 pseudogene 26 O - 20121230 -9606 728381 NRBF2P4 - - HGNC:44607 8 8q23.1 nuclear receptor binding factor 2 pseudogene 4 pseudo NRBF2P4 nuclear receptor binding factor 2 pseudogene 4 O - 20121230 -9606 728386 USP17L5 - - HGNC:37177|Ensembl:ENSG00000227140|Vega:OTTHUMG00000160182 4 4p16.1 ubiquitin specific peptidase 17-like family member 5 protein-coding USP17L5 ubiquitin specific peptidase 17-like family member 5 O deubiquitinating enzyme 17-like protein 5|ubiquitin carboxyl-terminal hydrolase 17-like protein 5|ubiquitin specific peptidase 17-like 5|ubiquitin thioesterase 17-like protein 5|ubiquitin thiolesterase 17-like protein 5|ubiquitin-specific-processing protease 17-like protein 5 20121209 -9606 728388 DNM1P30 - DNM1DN3-4|DNM1DN3.4|DNM1DN3@|DNM1DN4-3|DNM1DN4@ HGNC:35177 15 15q13.2 DNM1 pseudogene 30 pseudo DNM1P30 DNM1 pseudogene 30 O - 20121230 -9606 728392 LOC728392 - - - 17 17p13.2 uncharacterized LOC728392 protein-coding - - - uncharacterized protein LOC728392 20121230 -9606 728393 USP17L27 - - HGNC:44455|Ensembl:ENSG00000235780|Vega:OTTHUMG00000160186 4 4p16.1 ubiquitin specific peptidase 17-like family member 27 protein-coding USP17L27 ubiquitin specific peptidase 17-like family member 27 O - 20121230 -9606 728395 TSPY4 - TSPY10|TSPY8 HGNC:37287|Ensembl:ENSG00000233803|Vega:OTTHUMG00000041529 Y Yp11.2 testis specific protein, Y-linked 4 protein-coding TSPY4 testis specific protein, Y-linked 4 O testis-specific Y-encoded protein 4 20121209 -9606 728400 USP17L28 - - HGNC:44456|Ensembl:ENSG00000231051|Vega:OTTHUMG00000160191 4 4p16.1 ubiquitin specific peptidase 17-like family member 28 protein-coding USP17L28 ubiquitin specific peptidase 17-like family member 28 O - 20121209 -9606 728402 TPI1P3 - - HGNC:38070 6 6q22.1 triosephosphate isomerase 1 pseudogene 3 pseudo TPI1P3 triosephosphate isomerase 1 pseudogene 3 O - 20121230 -9606 728403 TSPY8 - - HGNC:37471|Ensembl:ENSG00000229549|Vega:OTTHUMG00000041531 Y Yp11.2 testis specific protein, Y-linked 8 protein-coding TSPY8 testis specific protein, Y-linked 8 O testis-specific Y-encoded protein 8 20121209 -9606 728404 AGAP8 - CTGLF5 HGNC:23464|Ensembl:ENSG00000174194|Vega:OTTHUMG00000018205 10 10q11.23 ArfGAP with GTPase domain, ankyrin repeat and PH domain 8 protein-coding AGAP8 ArfGAP with GTPase domain, ankyrin repeat and PH domain 8 O AGAP-8|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 8|centaurin, gamma-like family, member 5|centaurin-gamma-like family member 5 20121230 -9606 728405 USP17L29 - - HGNC:44457|Ensembl:ENSG00000231637|Vega:OTTHUMG00000160183 4 4p16.1 ubiquitin specific peptidase 17-like family member 29 protein-coding USP17L29 ubiquitin specific peptidase 17-like family member 29 O - 20121230 -9606 728407 LOC728407 RP11-592B15.4 - - 10 10q11.23 poly (ADP-ribose) glycohydrolase pseudogene pseudo - - - - 20121209 -9606 728409 C21orf54 hCG_2045804 - HGNC:1296 21 21q22.11 chromosome 21 open reading frame 54 miscRNA C21orf54 chromosome 21 open reading frame 54 O - 20121230 -9606 728410 DUX4L2 - DUX4 HGNC:37267|Ensembl:ENSG00000259128 4 4q35.2 double homeobox 4 like 2 protein-coding DUX4L2 double homeobox 4 like 2 O double homeobox protein 4-like protein 2 20121230 -9606 728411 GUSBP1 - - HGNC:13670 5 5p14.3 glucuronidase, beta pseudogene 1 pseudo GUSBP1 glucuronidase, beta pseudogene 1 O - 20121230 -9606 728416 LOC728416 - - - 7 7p11.2 translational machinery associated 7 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 728417 LOC728417 - - - 1 1q41 uncharacterized LOC728417 pseudo - - - - 20121230 -9606 728418 POM121L7 - - HGNC:35444 22 22q11.21 POM121 transmembrane nucleoporin-like 7 pseudo POM121L7 POM121 transmembrane nucleoporin-like 7 O - 20121209 -9606 728419 USP17L30 - - HGNC:44458|Ensembl:ENSG00000228856|Vega:OTTHUMG00000160199 4 4p16.1 ubiquitin specific peptidase 17-like family member 30 protein-coding USP17L30 ubiquitin specific peptidase 17-like family member 30 O - 20121230 -9606 728424 LOC728424 - - - 15 15q13.2 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 pseudogene pseudo - - - - 20121209 -9606 728428 RPS15P1 - RPS15_1_87 HGNC:35725 1 1p13.2 ribosomal protein S15 pseudogene 1 pseudo RPS15P1 ribosomal protein S15 pseudogene 1 O - 20121230 -9606 728429 LOC728429 - - - 4 4p16.1 zinc finger protein 705A-like pseudo - - - - 20121222 -9606 728430 FAM90A20P - FAM90A20 HGNC:32268|MIM:613054 8 8p23.1 putative protein FAM90A20 pseudo FAM90A20P family with sequence similarity 90, member A20, pseudogene O - 20121230 -9606 728431 LOC728431 - - - 1 1p34.3 uncharacterized LOC728431 miscRNA - - - - 20121230 -9606 728432 LOC728432 - - - 3 3p11.1 NMDA receptor regulated 2 pseudogene pseudo - - - - 20121230 -9606 728433 LOC728433 - - - 9 9p11.2 fibroblast growth factor 7 pseudogene pseudo - - - - 20121209 -9606 728434 C20orf187 RP4-727I10.1 dJ727I10.1 HGNC:16180 20 20p12.2 chromosome 20 open reading frame 187 unknown C20orf187 chromosome 20 open reading frame 187 O putative uncharacterized protein C20orf187 20121216 -9606 728441 GGT2 - GGT|GGT 2 HGNC:4251|MIM:137181|Ensembl:ENSG00000133475|Vega:OTTHUMG00000150617 22 22q11.21 gamma-glutamyltransferase 2 protein-coding GGT2 gamma-glutamyltransferase 2 O gamma-glutamyltranspeptidase 2|glutathione hydrolase 2 20121230 -9606 728445 LOC728445 - - - 8 8p11.21 uncharacterized LOC728445 unknown - - - - 20120508 -9606 728447 TEX28P1 - pTEX HGNC:33356 X Xq28 testis expressed 28 pseudogene 1 pseudo TEX28P1 testis expressed 28 pseudogene 1 O - 20121230 -9606 728448 PPIEL - PPIEP1 HGNC:33195 1 1p34.3 peptidylprolyl isomerase E-like pseudogene pseudo PPIEL peptidylprolyl isomerase E-like pseudogene O - 20121230 -9606 728450 LINC00687 - C20orf61|dJ1012F16.1 HGNC:16194 20 20p12.2 long intergenic non-protein coding RNA 687 unknown LINC00687 long intergenic non-protein coding RNA 687 O - 20121230 -9606 728452 LOC728452 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 728453 RPS28P6 - RPS28_2_814 HGNC:36085 7 7q11.22 ribosomal protein S28 pseudogene 6 pseudo RPS28P6 ribosomal protein S28 pseudogene 6 O - 20121230 -9606 728458 OPN1MW2 - GOP HGNC:26952|Ensembl:ENSG00000166160|Vega:OTTHUMG00000024231 X Xq28 opsin 1 (cone pigments), medium-wave-sensitive 2 protein-coding OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 O green cone photoreceptor pigment|green-sensitive opsin|medium-wave-sensitive opsin 1 20121230 -9606 728461 CSAG2 - CSAG3B|CT24.2|TRAG-3|TRAG3 HGNC:16847 X Xq28 CSAG family, member 2 protein-coding CSAG2 CSAG family, member 2 O CSAG family, member 3B|cancer/testis antigen 24.2|cancer/testis antigen family 24, member 2|chondrosarcoma-associated gene 2/3 protein|taxol resistance associated gene 3|taxol-resistant-associated gene 3 protein 20121230 -9606 728463 LOC728463 - - - 1 1q41 uncharacterized LOC728463 miscRNA - - - - 20121230 -9606 728464 METTL24 RP1-71D21.2 C6orf186|dJ71D21.2 HGNC:21566|Ensembl:ENSG00000053328|Vega:OTTHUMG00000015359 6 6q21 methyltransferase like 24 protein-coding METTL24 methyltransferase like 24 O UPF0624 protein C6orf186|methyltransferase-like protein 24 20121230 -9606 728467 SNX5P2 - - HGNC:41513 12 12q23.1 sorting nexin 5 pseudogene 2 pseudo SNX5P2 sorting nexin 5 pseudogene 2 O - 20121230 -9606 728468 BCRP6 - - HGNC:39074 22 22q11.21 breakpoint cluster region pseudogene 6 pseudo BCRP6 breakpoint cluster region pseudogene 6 O - 20121209 -9606 728470 LOC728470 - - - X Xq26.3 chromosome X open reading frame 48 pseudogene pseudo - - - - 20121230 -9606 728477 LOC728477 - - - 15 15q26.1 golgin A2 pseudogene pseudo - - - - 20121230 -9606 728481 RPL23AP21 - RPL23A_1_1 HGNC:35827 1 1p36.33 ribosomal protein L23a pseudogene 21 pseudo RPL23AP21 ribosomal protein L23a pseudogene 21 O - 20121209 -9606 728484 RPL23AP61 - RPL23A_22_1044 HGNC:36016 10 10q11.23 ribosomal protein L23a pseudogene 61 pseudo RPL23AP61 ribosomal protein L23a pseudogene 61 O - 20121230 -9606 728485 LOC728485 - - - 19 19q13.12 uncharacterized LOC728485 unknown - - - - 20121230 -9606 728486 RPL7AP64 - RPL7A_29_1509 HGNC:35821 17 17p13.1 ribosomal protein L7a pseudogene 64 pseudo RPL7AP64 ribosomal protein L7a pseudogene 64 O - 20121230 -9606 728488 LOC728488 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 728489 DNLZ RP11-413M3.2 C9orf151|HEP|TIMM15|ZIM17|bA413M3.2 HGNC:33879|Ensembl:ENSG00000213221|Vega:OTTHUMG00000020931 9 9q34.3 DNL-type zinc finger protein-coding DNLZ DNL-type zinc finger O DNL-type zinc finger protein|HSP70 escort protein|RP11-413M3.2|translocase of inner mitochondrial membrane 15 homolog 20121230 -9606 728492 SERF1B - FAM2B|H4F5C HGNC:10756|Ensembl:ENSG00000205572|Vega:OTTHUMG00000162391 5 5q13.2 small EDRK-rich factor 1B (centromeric) protein-coding SERF1B small EDRK-rich factor 1B (centromeric) O SMA modifier 1|h4F5|protein 4F5|small EDRK-rich factor 1 20121230 -9606 728493 DPPA3P1 GHc-362H12.2 - HGNC:32345 X Xq22.2 developmental pluripotency associated 3 pseudogene 1 pseudo DPPA3P1 developmental pluripotency associated 3 pseudogene 1 O - 20121230 -9606 728495 FAM74A3 - - HGNC:32031|Vega:OTTHUMG00000067149 9 9p13.1 family with sequence similarity 74, member A3 miscRNA FAM74A3 family with sequence similarity 74, member A3 O - 20121230 -9606 728498 GOLGA8H - GOLGA6L11 HGNC:37443|Ensembl:ENSG00000261794|Vega:OTTHUMG00000175654 15 15q13.2 golgin A8 family, member H protein-coding GOLGA8H golgin A8 family, member H O Golgin subfamily A member 8-like protein 1|golgi autoantigen, golgin subfamily a, 6-like 11 20121230 -9606 728499 LOC728499 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 728501 RPL21P75 - RPL21_29_789 HGNC:36460 7 7p21.1 ribosomal protein L21 pseudogene 75 pseudo RPL21P75 ribosomal protein L21 pseudogene 75 O - 20121230 -9606 728503 LOC728503 - - - 12 12q13.13 uncharacterized LOC728503 protein-coding - - - - 20121209 -9606 728505 WDR82P1 hCG_26824 SW2|SWD2|WDR82|WDR82B|hCG26824 HGNC:32447 3 3q11.2 WD repeat domain 82 pseudogene 1 pseudo WDR82P1 WD repeat domain 82 pseudogene 1 O - 20121230 -9606 728506 LOC728506 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 728509 RPS19P7 - RPS19_3_1038 HGNC:35550 10 10q11.21 ribosomal protein S19 pseudogene 7 pseudo RPS19P7 ribosomal protein S19 pseudogene 7 O - 20121230 -9606 728513 PNMA6B - - HGNC:26681 X Xq28 paraneoplastic Ma antigen family member 6B protein-coding PNMA6B paraneoplastic Ma antigen family member 6B O paraneoplastic antigen like 6B 20121230 -9606 728517 RPL23AP24 - RPL23A_1_2 HGNC:36176 1 1p36.33 ribosomal protein L23a pseudogene 24 pseudo RPL23AP24 ribosomal protein L23a pseudogene 24 O - 20121209 -9606 728519 LOC728519 - BIRC|NAIP1B - 5 5q13.2 NLR family, apoptosis inhibitory protein pseudogene pseudo - - - - 20121230 -9606 728523 RPL9P17 - RPL9_5_548 HGNC:36337 5 5p13.3 ribosomal protein L9 pseudogene 17 pseudo RPL9P17 ribosomal protein L9 pseudogene 17 O - 20121230 -9606 728524 LOC728524 - - - 7 7q11.23 Williams Beuren syndrome chromosome region 19 pseudogene pseudo - - - - 20121230 -9606 728526 LOC728526 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 728532 LOC728532 - - - 10 10q11.23 dynein, cytoplasmic 1, intermediate chain 2 pseudogene pseudo - - - - 20121230 -9606 728533 LOC728533 - - - 19 19q13.12 IST1 homolog pseudo - - - - 20121230 -9606 728535 LOC728535 - - - 5 5q13.2 NLR family, apoptosis inhibitory protein pseudogene pseudo - - - - 20121230 -9606 728537 LOC728537 - - - 2 2q11.2 uncharacterized LOC728537 miscRNA - - - - 20121230 -9606 728538 RPL23AP77 - RPL23A_33_1589 HGNC:36354 18 18q11.2 ribosomal protein L23a pseudogene 77 pseudo RPL23AP77 ribosomal protein L23a pseudogene 77 O - 20121230 -9606 728540 LOC728540 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 728543 LOC728543 - - - 12 12q24.13 uncharacterized LOC728543 unknown - - - - 20120511 -9606 728549 LOC728549 - - - 5 5q13.2 calcium binding protein P22 pseudogene pseudo - - - - 20121230 -9606 728553 RPS8P8 - RPS8_1_552 HGNC:36213 5 5p13.3 ribosomal protein S8 pseudogene 8 pseudo RPS8P8 ribosomal protein S8 pseudogene 8 O - 20121230 -9606 728554 LOC728554 - - - 5 5q35.3 THO complex 3 pseudogene pseudo - - - - 20121230 -9606 728556 MEMO1P1 - C21orf19|C2orf4P|MEMO1P|rcC2orf4 HGNC:23274 21 21q22.12 mediator of cell motility 1 pseudogene 1 pseudo MEMO1P1 mediator of cell motility 1 pseudogene 1 O - 20121230 -9606 728558 LOC728558 - - Vega:OTTHUMG00000018822 10 10q24.1 uncharacterized LOC728558 miscRNA - - - - 20121230 -9606 728562 RPSAP45 - RPSA_11_739 HGNC:35857 6 6q21 ribosomal protein SA pseudogene 45 pseudo RPSAP45 ribosomal protein SA pseudogene 45 O - 20121230 -9606 728564 GMPSP1 - - HGNC:39428 4 4p16.1 guanine monphosphate synthetase pseudogene 1 pseudo GMPSP1 guanine monphosphate synthetase pseudogene 1 O - 20121230 -9606 728567 RPL23AP48 - RPL23A_16_748 HGNC:36110 6 6q22.31 ribosomal protein L23a pseudogene 48 pseudo RPL23AP48 ribosomal protein L23a pseudogene 48 O - 20121230 -9606 728568 C12orf73 - - HGNC:34450|Ensembl:ENSG00000204954|Vega:OTTHUMG00000170119 12 12q23.3 chromosome 12 open reading frame 73 protein-coding C12orf73 chromosome 12 open reading frame 73 O uncharacterized protein C12orf73 20121230 -9606 728572 RPL32P11 - RPL32_2_350 HGNC:35723 3 3p24.2 ribosomal protein L32 pseudogene 11 pseudo RPL32P11 ribosomal protein L32 pseudogene 11 O - 20121230 -9606 728573 LOC728573 - - - 20 20p12.2 uncharacterized LOC728573 unknown - - - - 20120511 -9606 728575 LOC728575 - - - 5 5q13.2 POM121 membrane glycoprotein (rat) pseudogene pseudo - - - - 20121209 -9606 728576 RPL15P7 - RPL15_2_475 HGNC:36808 4 4p12 ribosomal protein L15 pseudogene 7 pseudo RPL15P7 ribosomal protein L15 pseudogene 7 O - 20121230 -9606 728577 CNTNAP3B AL353791.1 - HGNC:32035|Ensembl:ENSG00000154529|Vega:OTTHUMG00000013174 9 9p11.2 contactin associated protein-like 3B protein-coding CNTNAP3B contactin associated protein-like 3B O cell recognition molecule Caspr3b|contactin-associated protein-like 3B 20121230 -9606 728586 LOC728586 hCG_1981531 - - 5 5q23.2 hCG1981531 unknown - - - - 20121230 -9606 728587 LOC728587 - - - 8 8q11.1 zinc finger protein 736 pseudogene pseudo - - - - 20121230 -9606 728588 MS4A18 - - HGNC:37636|Ensembl:ENSG00000214782|Vega:OTTHUMG00000167687 11 11q12.2 membrane-spanning 4-domains, subfamily A, member 18 protein-coding MS4A18 membrane-spanning 4-domains, subfamily A, member 18 O - 20121230 -9606 728589 NAP1L4P1 RP4-781D12.3 - HGNC:39740 1 1p13.1 nucleosome assembly protein 1-like 4 pseudogene 1 pseudo NAP1L4P1 nucleosome assembly protein 1-like 4 pseudogene 1 O - 20121230 -9606 728590 RPS27AP11 - RPS27A_4_740 HGNC:36126 6 6q21 ribosomal protein S27a pseudogene 11 pseudo RPS27AP11 ribosomal protein S27a pseudogene 11 O - 20121230 -9606 728591 CCDC169 RP11-251J8.1 C13orf38 HGNC:34361|Ensembl:ENSG00000242715|Vega:OTTHUMG00000016731 13 13q13.3 coiled-coil domain containing 169 protein-coding CCDC169 coiled-coil domain containing 169 O RP11-251J8.1|coiled-coil domain-containing protein 169 20121230 -9606 728597 DCDC2C - - HGNC:32696|Ensembl:ENSG00000214866|Vega:OTTHUMG00000151490 2 2p25.3 doublecortin domain containing 2C protein-coding DCDC2C doublecortin domain containing 2C O doublecortin domain containing 2C pseudogene|doublecortin domain-containing protein 2C 20121230 -9606 728599 CIAPIN1P - HsT2384 HGNC:31087 18 18q11.2 cytokine induced apoptosis inhibitor 1 pseudogene pseudo CIAPIN1P cytokine induced apoptosis inhibitor 1 pseudogene O - 20121230 -9606 728602 LOC728602 - - - 1 1p34.2 ornithine decarboxylase antizyme 1 pseudogene pseudo - - - - 20121230 -9606 728603 FRMPD2P2 RP11-556L1.3 FRMPD2L2|FRMPDP2|PDZD5B|PDZK5B|bA556L1.2 HGNC:23453 10 10q11.22 FERM and PDZ domain containing 2 pseudogene 2 pseudo FRMPD2P2 FERM and PDZ domain containing 2 pseudogene 2 O - 20121209 -9606 728606 LOC728606 - - - 18 18q11.2 uncharacterized LOC728606 miscRNA - - - - 20121230 -9606 728608 CTGLF8P RP11-556L1.2 bA556L1.5 HGNC:23461 10 10q11.22 centaurin, gamma-like family, member 8 pseudogene pseudo CTGLF8P centaurin, gamma-like family, member 8 pseudogene O - 20121209 -9606 728609 SDHAP3 - SDHACL|SDHAL HGNC:18781 5 5p15.33 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 pseudo SDHAP3 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 O - 20121230 -9606 728611 LOC728611 - - - 9 9q13 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121230 -9606 728613 LOC728613 - - - 5 5p15.33 programmed cell death 6 pseudogene pseudo - - - - 20121230 -9606 728614 DNAJA1P4 - - HGNC:39340 6 6q22.1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 4 pseudo DNAJA1P4 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 4 O - 20121230 -9606 728615 CICP13 - - HGNC:37907 1 1q41 capicua homolog (Drosophila) pseudogene 13 pseudo CICP13 capicua homolog (Drosophila) pseudogene 13 O - 20121230 -9606 728619 ASB9P1 - - HGNC:20972 15 15q26.1 ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo ASB9P1 ankyrin repeat and SOCS box containing 9 pseudogene 1 O - 20121230 -9606 728620 RPL7P22 - RPL7_6_574 HGNC:35802 5 5q13.2 ribosomal protein L7 pseudogene 22 pseudo RPL7P22 ribosomal protein L7 pseudogene 22 O - 20121230 -9606 728621 CCDC30 RP4-692D3.1 PFD6L|PFDN6L HGNC:26103|Ensembl:ENSG00000186409|HPRD:08632|Vega:OTTHUMG00000007334 1 1p34.2 coiled-coil domain containing 30 protein-coding CCDC30 coiled-coil domain containing 30 O coiled-coil domain-containing protein 30|prefoldin subunit 6-like protein 20121230 -9606 728622 SKP1P2 - SKP1B|p19B HGNC:10900|MIM:601435 12 12p12.3 S-phase kinase-associated protein 1 pseudogene 2 pseudo SKP1P2 S-phase kinase-associated protein 1 pseudogene 2 O - 20121230 -9606 728629 TPI1P4 - - HGNC:38071 4 4p11 triosephosphate isomerase 1 pseudogene 4 pseudo TPI1P4 triosephosphate isomerase 1 pseudogene 4 O - 20121230 -9606 728632 HMGN2P3 - HMGN2L3 HGNC:33566 16 16p12.1 high mobility group nucleosomal binding domain 2 pseudogene 3 pseudo HMGN2P3 high mobility group nucleosomal binding domain 2 pseudogene 3 O - 20121230 -9606 728633 GTF2F2P2 - - HGNC:39092 1 1p34.2 general transcription factor IIF, polypeptide 2 pseudogene 2 pseudo GTF2F2P2 general transcription factor IIF, polypeptide 2 pseudogene 2 O - 20121230 -9606 728635 DHRS4L1 - SDR25C4 HGNC:19732 14 14q11.2 dehydrogenase/reductase (SDR family) member 4 like 1 protein-coding DHRS4L1 dehydrogenase/reductase (SDR family) member 4 like 1 O putative dehydrogenase/reductase SDR family member 4-like 2|short chain dehydrogenase/reductase family 25C, member 4 20121230 -9606 728636 LOC728636 - - - 15 15q25.2 golgin A6 family, member D pseudogene pseudo - - - - 20121230 -9606 728637 LOC728637 - - - 5 5q31.1 uncharacterized LOC728637 protein-coding - - - - 20121230 -9606 728638 KRT8P3 hCG_1988300 - HGNC:31056 8 8q12.3 keratin 8 pseudogene 3 pseudo KRT8P3 keratin 8 pseudogene 3 O - 20121230 -9606 728640 FAM133CP - - HGNC:44190 10 10q21.1 family with sequence similarity 133, member A pseudogene pseudo FAM133CP family with sequence similarity 133, member C, pseudogene O - 20121230 -9606 728641 FABP5P7 - FABP5L7 HGNC:31070 11 11q12.1 fatty acid binding protein 5 pseudogene 7 pseudo FABP5P7 fatty acid binding protein 5 pseudogene 7 O - 20121230 -9606 728642 CDK11A RP1-283E3.2 CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA HGNC:1730|MIM:116951|Ensembl:ENSG00000008128|Vega:OTTHUMG00000000703 1 1p36.33 cyclin-dependent kinase 11A protein-coding CDK11A cyclin-dependent kinase 11A O PITSLRE B|PITSLRE protein kinase beta|PITSLRE serine/threonine-protein kinase CDC2L2|cell division cycle 2-like 2 (PITSLRE proteins)|cell division cycle 2-like protein kinase 2|cell division protein kinase 11A|galactosyltransferase-associated protein kinase p58/GTA 20121230 -9606 728643 LOC728643 - - - 10 10q11.22 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 728655 HULC - LINC00078|NCRNA00078 HGNC:34232|MIM:612210 6 6p24.3 highly up-regulated in liver cancer (non-protein coding) miscRNA HULC highly up-regulated in liver cancer (non-protein coding) O - 20121230 -9606 728656 DMRTC1B - - HGNC:31686|Ensembl:ENSG00000184911|Vega:OTTHUMG00000021818 X Xq13.2 DMRT-like family C1B protein-coding DMRTC1B DMRT-like family C1B O DMRT-like family C1|doublesex- and mab-3-related transcription factor C1 20121230 -9606 728657 LOC728657 - - - 10 10q11.22 dual specificity phosphatase 8 pseudogene pseudo - - - - 20121209 -9606 728658 RPL13AP5 - RPL13A_8_1086|bA196N24.2 HGNC:23736 10 10q24.1 ribosomal protein L13a pseudogene 5 pseudo RPL13AP5 ribosomal protein L13a pseudogene 5 O - 20121230 -9606 728660 LOC728660 - - Vega:OTTHUMG00000022540 X Xq27.1 uncharacterized LOC728660 unknown - - - - 20121017 -9606 728661 SLC35E2B RP11-345P4.4 SLC35E2 HGNC:33941|Ensembl:ENSG00000189339|Vega:OTTHUMG00000078639 1 1p36.33 solute carrier family 35, member E2B protein-coding SLC35E2B solute carrier family 35, member E2B O solute carrier family 35 member E2|solute carrier family 35 member E2B 20121230 -9606 728664 API5P2 - - HGNC:39070 2 2q31.2 API5 pseudogene 2 pseudo API5P2 API5 pseudogene 2 O - 20121230 -9606 728666 PRELID1P1 - - HGNC:43886 6 6q22.32 PRELI domain containing 1 pseudogene 1 pseudo PRELID1P1 PRELI domain containing 1 pseudogene 1 O - 20121230 -9606 728667 LOC728667 - - - 14 14q11.2 dehydrogenase/reductase (SDR family) member 2 pseudogene pseudo - - - - 20121230 -9606 728671 LOC728671 - - - 20 20q13.13 uncharacterized LOC728671 protein-coding - - - - 20121209 -9606 728673 LOC728673 RP11-262H14.4 - - 9 9q12 family with sequence similarity 88, member B unknown - - - - 20120511 -9606 728675 LOC728675 - - - 17 17q21.31 chromosome 11 open reading frame 75 pseudogene pseudo - - - - 20121230 -9606 728684 LOC728684 - - - 10 10q11.22 uncharacterized LOC728684 unknown - - - - 20120511 -9606 728688 LOC728688 hCG_23738 - - 12 12p12.2 ubiquitin-like, containing PHD and RING finger domains, 1 pseudogene pseudo - - - - 20121230 -9606 728689 EIF3CL - - HGNC:26347|Ensembl:ENSG00000205609|Vega:OTTHUMG00000097025 16 16p11.2 eukaryotic translation initiation factor 3, subunit C-like protein-coding EIF3CL eukaryotic translation initiation factor 3, subunit C-like O eIF3 p110|eIF3c|eukaryotic translation initiation factor 3 subunit 8|eukaryotic translation initiation factor 3 subunit C|eukaryotic translation initiation factor 3, subunit 8, 110kDa-like 20121230 -9606 728690 LOC728690 hCG_1647286 - - 1 1p36.33 uncharacterized LOC728690 protein-coding - - - - 20120511 -9606 728693 RPL21P105 - RPL21_43_1282 HGNC:36304 12 12q24.22 ribosomal protein L21 pseudogene 105 pseudo RPL21P105 ribosomal protein L21 pseudogene 105 O - 20121230 -9606 728695 SPANXB1 RP3-376H23.1 B1|CT11.2|SPANX-B|SPANXB HGNC:14329|MIM:300669|Ensembl:ENSG00000235604|HPRD:15423|Vega:OTTHUMG00000022553 X Xq27.1 SPANX family, member B1 protein-coding SPANXB1 SPANX family, member B1 O SPANX family member B/F|cancer/testis antigen 11.2|cancer/testis antigen family 11, member 2|nuclear-associated protein SPAN-Xb|nuclear-associated protein SPAN-Xf|sperm protein associated with the nucleus on the X chromosome B/F|sperm protein associated with the nucleus, X chromosome, family member B1 20121230 -9606 728698 EIF4A1P4 - - HGNC:37923 12 12q13.13 eukaryotic translation initiation factor 4A1 pseudogene 4 pseudo EIF4A1P4 eukaryotic translation initiation factor 4A1 pseudogene 4 O - 20121230 -9606 728700 RPS3AP19 - RPS3A_8_458 HGNC:36467 4 4p16.1 ribosomal protein S3a pseudogene 19 pseudo RPS3AP19 ribosomal protein S3a pseudogene 19 O - 20121230 -9606 728705 LOC728705 - - - 12 12q23.3 uncharacterized LOC728705 unknown - - - - 20120508 -9606 728706 SUGT1P2 - - HGNC:31377 3 3p22.3 suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 2 pseudo SUGT1P2 suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 2 O - 20121230 -9606 728710 FAM177A1P1 - FAM177A2 HGNC:34441 4 4q23 Putative protein FAM177A2 pseudo FAM177A1P1 family with sequence similarity 177, member A1 pseudogene 1 O - 20121230 -9606 728712 SPANXA2 RP1-171K16.2 CT11.1|SPANX|SPANX-A|SPANXA HGNC:14328|MIM:300493|Ensembl:ENSG00000203926|HPRD:06720|Vega:OTTHUMG00000022565 X Xq27.1 SPANX family, member A2 protein-coding SPANXA2 SPANX family, member A2 O SPANX family member A|cancer/testis antigen 11.1|nuclear-associated protein SPAN-Xa|sperm protein associated with the nucleus on the X chromosome A|sperm protein associated with the nucleus, X chromosome, family member A2 20121230 -9606 728715 LOC728715 - - - 12 12p13.31 ovostatin homolog 2-like protein-coding - - - - 20121230 -9606 728716 LOC728716 hCG_2036596 - - 1 1p36.32 uncharacterized LOC728716 miscRNA - - - - 20121230 -9606 728723 ZBED3-AS1 - - HGNC:44188 5 5q13.3 ZBED3 antisense RNA 1 miscRNA ZBED3-AS1 ZBED3 antisense RNA 1 O - 20121230 -9606 728724 LOC728724 hCG_1814486 - - 8 8q24.21 hCG1814486 miscRNA - - - - 20121230 -9606 728725 LOC728725 - - - 10 10q11.22 dual specificity phosphatase 8 pseudogene pseudo - - - - 20121230 -9606 728728 LOC728728 - - - 1 1q42.13 putative uncharacterized protein encoded by LINC00174-like protein-coding - - - - 20121209 -9606 728729 FABP5P8 - FABP5L8 HGNC:31063 15 15q25.2 fatty acid binding protein 5 pseudogene 8 pseudo FABP5P8 fatty acid binding protein 5 pseudogene 8 O - 20121230 -9606 728730 LOC728730 - - - 2 2p22.1 uncharacterized LOC728730 miscRNA - - - - 20121230 -9606 728732 LOC728732 - - - 11 11p15.4 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 728734 LOC728734 - - Ensembl:ENSG00000255524|Vega:OTTHUMG00000166386 16 16p11.2 nuclear pore complex-interacting protein-like 2-like protein-coding - - - - 20121209 -9606 728737 LOC728737 - - - 10 10q21.3 TatD DNase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 728739 LOC728739 - - - 12 12q23.3 programmed cell death 2 pseudogene pseudo - - - - 20121230 -9606 728741 LOC728741 - - Ensembl:ENSG00000198156|Vega:OTTHUMG00000166319 16 16p11.2 uncharacterized LOC728741 protein-coding - - - - 20121230 -9606 728743 LOC728743 tcag7.1196 - - 7 7q36.1 zinc finger protein pseudogene pseudo - - - - 20121230 -9606 728746 FAM90A17P - FAM90A17 HGNC:32265 8 8p23.1 family with sequence similarity 90, member A17, pseudogene pseudo FAM90A17P family with sequence similarity 90, member A17, pseudogene O - 20121230 -9606 728747 ANKRD20A4 CR769776.1 - HGNC:31982|Ensembl:ENSG00000172014|Vega:OTTHUMG00000066855 9 9q21.11 ankyrin repeat domain 20 family, member A4 protein-coding ANKRD20A4 ankyrin repeat domain 20 family, member A4 O ankyrin repeat domain-containing protein 20A4 20121230 -9606 728748 PRKRIRP1 - - HGNC:39563 X Xq13.2 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 1 pseudo PRKRIRP1 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 1 O - 20121230 -9606 728752 LOC728752 - - - 19 19q13.12 uncharacterized LOC728752 miscRNA - - - - 20121230 -9606 728753 FAM90A19P - FAM90A19 HGNC:32267|MIM:613053 8 8p23.1 putative protein FAM90A18/FAM90A19 pseudo FAM90A19P family with sequence similarity 90, member A19, pseudogene O - 20121209 -9606 728755 LOC728755 - - - 14 14q12 uncharacterized LOC728755 unknown - - - - 20121230 -9606 728758 PIN4P1 hCG_1789710 - HGNC:44193 15 15q15.3 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 pseudo PIN4P1 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 O - 20121230 -9606 728763 LOC728763 - - - 2 2q37.3 rootletin-like protein-coding - - - - 20121230 -9606 728769 LOC728769 - - - 5 5q14.1 uncharacterized LOC728769 unknown - - - - 20121230 -9606 728770 DNM1P5 - DNM1DN5|DNM1DN5@ HGNC:21122 15 15q14 DNM1 pseudogene 5 pseudo DNM1P5 DNM1 pseudogene 5 O - 20121230 -9606 728773 PABPC1P2 - PABP2|PABP4|PABPCP2|PABPCP4 HGNC:8559 2 2q22.3 poly(A) binding protein, cytoplasmic 1 pseudogene 2 pseudo PABPC1P2 poly(A) binding protein, cytoplasmic 1 pseudogene 2 O - 20121230 -9606 728774 RPS15AP25 - RPS15A_14_912 HGNC:36848 8 8q13.2 ribosomal protein S15a pseudogene 25 pseudo RPS15AP25 ribosomal protein S15a pseudogene 25 O - 20121230 -9606 728776 HMGN1P37 hCG_17955 - HGNC:39421 X Xq28 high mobility group nucleosome binding domain 1 pseudogene 37 pseudo HMGN1P37 high mobility group nucleosome binding domain 1 pseudogene 37 O - 20121230 -9606 728780 ANKDD1B - - HGNC:32525|Ensembl:ENSG00000189045|Vega:OTTHUMG00000162490 5 5q13.3 ankyrin repeat and death domain containing 1B protein-coding ANKDD1B ankyrin repeat and death domain containing 1B O ankyrin repeat and death domain-containing protein 1B|ankyrin repeat and death domain-containing protein ENSP00000345065 20121230 -9606 728782 RPL21P134 - RPL21_61_1788 HGNC:36006 X Xq13.3 ribosomal protein L21 pseudogene 134 pseudo RPL21P134 ribosomal protein L21 pseudogene 134 O - 20121230 -9606 728788 ANKRD20A20P CR769776.2 CCDC29 HGNC:32319 9 9q21.11 ankyrin repeat domain 20 family, member A20, pseudogene pseudo ANKRD20A20P ankyrin repeat domain 20 family, member A20, pseudogene O - 20121209 -9606 728791 RPS10P4 - RPS10_2_393|bcm1851 HGNC:31364 3 3q13.31 ribosomal protein S10 pseudogene 4 pseudo RPS10P4 ribosomal protein S10 pseudogene 4 O - 20121230 -9606 728798 FRMPD2P1 XXyac-YX59F3.1 FRMPD2L1|PDZD5A|PDZK5A|yX59F3.2 HGNC:16843 10 10q11.22 FERM and PDZ domain containing 2 pseudogene 1 pseudo FRMPD2P1 FERM and PDZ domain containing 2 pseudogene 1 O - 20121230 -9606 728802 LOC728802 - - - 1 1q21.1 myomegalin-like protein-coding - - - - 20121102 -9606 728805 LOC728805 - - - 20 20q13.2 uncharacterized LOC728805 unknown - - - - 20120511 -9606 728806 NSFP1 - NSFP HGNC:31405 17 17q21.31 N-ethylmaleimide-sensitive factor pseudogene 1 pseudo NSFP1 N-ethylmaleimide-sensitive factor pseudogene 1 O - 20121230 -9606 728807 LOC728807 - - - 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide B15 pseudogene pseudo - - - - 20121230 -9606 728811 LOC728811 - - - 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide B15 pseudogene pseudo - - - - 20121230 -9606 728813 LOC728813 - - - 10 10q11.22 dual specificity phosphatase 8 pseudogene pseudo - - - - 20121209 -9606 728815 LOC728815 - - - 2 2q12.1 cytokine receptor-like factor 3 pseudogene pseudo - - - - 20121230 -9606 728819 LOC728819 hCG_1645220 - - 2 2p21 hCG1645220 protein-coding - - - C1GALT1-specific chaperone 1-like 20121230 -9606 728820 RPL29P15 - RPL29_4_582 HGNC:36159 5 5q14.1 ribosomal protein L29 pseudogene 15 pseudo RPL29P15 ribosomal protein L29 pseudogene 15 O - 20121230 -9606 728823 RPS26P53 - RPS26_19_1511 HGNC:35582 17 17p13.1 ribosomal protein S26 pseudogene 53 pseudo RPS26P53 ribosomal protein S26 pseudogene 53 O - 20121230 -9606 728825 LOC728825 - - - X Xq23 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 728833 FAM72D WI2-929E21.1 GCUD2 HGNC:33593|MIM:614712|Ensembl:ENSG00000215784|Vega:OTTHUMG00000074801 1 1q21.1 family with sequence similarity 72, member D protein-coding FAM72D family with sequence similarity 72, member D O family with sequence similarity 72 member|gastric cancer up-regulated protein 2|gastric cancer up-regulated-2|protein FAM72D 20121230 -9606 728841 NBPF8 RP3-377D14.1 NBPF21 HGNC:31990|MIM:613998 1 1q21.1 neuroblastoma breakpoint family, member 8 unknown NBPF8 neuroblastoma breakpoint family, member 8 O hypothetical protein LOC728841 20121230 -9606 728843 RPL7P20 - RPL7_8_636 HGNC:36013 5 5q34 ribosomal protein L7 pseudogene 20 pseudo RPL7P20 ribosomal protein L7 pseudogene 20 O - 20121230 -9606 728851 HMGN1P36 - - HGNC:39380 2 2q11.2 high mobility group nucleosome binding domain 1 pseudogene 36 pseudo HMGN1P36 high mobility group nucleosome binding domain 1 pseudogene 36 O - 20121230 -9606 728853 LOC728853 - - - 19 19q13.13 WD repeat domain 87 pseudogene pseudo - - - - 20121230 -9606 728855 LINC00623 - - HGNC:44252 1 1q21.1 long intergenic non-protein coding RNA 623 miscRNA LINC00623 long intergenic non-protein coding RNA 623 O - 20121230 -9606 728858 C12orf71 hCG_1794298 - HGNC:34452|Ensembl:ENSG00000214700|Vega:OTTHUMG00000169274 12 12p11.23 chromosome 12 open reading frame 71 protein-coding C12orf71 chromosome 12 open reading frame 71 O hCG1794298|uncharacterized protein C12orf71 20121230 -9606 728868 LOC728868 - - - 8 8p23.1 uncharacterized LOC728868 unknown - - - - 20120511 -9606 728873 PTMAP8 - - HGNC:42437 3 3q13.31 prothymosin, alpha pseudogene 8 pseudo PTMAP8 prothymosin, alpha pseudogene 8 O - 20121230 -9606 728875 LOC728875 - - - 1 1q21.1 uncharacterized LOC728875 miscRNA - - - - 20121230 -9606 728877 LOC728877 - - - 22 - COBW domain containing 3 pseudogene pseudo - - - - 20121209 -9606 728882 FAM182B RP13-401N8.2 - HGNC:34503 20 20p11.1 family with sequence similarity 182, member B miscRNA FAM182B family with sequence similarity 182, member B O - 20121230 -9606 728887 CCNB1IP1P1 - - HGNC:37693 1 1p34.1 cyclin B1 interacting protein 1 pseudogene 1 pseudo CCNB1IP1P1 cyclin B1 interacting protein 1 pseudogene 1 O - 20121230 -9606 728888 LOC728888 - - Ensembl:ENSG00000254206|Vega:OTTHUMG00000170467 16 16p11.2 nuclear pore complex-interacting protein-like 3-like protein-coding - - - - 20121209 -9606 728903 LOC728903 - - - 9 9p11.2 uncharacterized LOC728903 unknown - - - - 20120511 -9606 728911 CT45A2 RP13-36C9.1 CT45-2|CT45.2 HGNC:28400|MIM:300793|Ensembl:ENSG00000242185|HPRD:06644|Vega:OTTHUMG00000022490 X Xq26.3 cancer/testis antigen family 45, member A2 protein-coding CT45A2 cancer/testis antigen family 45, member A2 O cancer/testis antigen 45-2|cancer/testis antigen 45A2|cancer/testis antigen CT45|cancer/testis antigen family 45 member A2 20121230 -9606 728912 NBPF24 XXyac-YX155B6.1 - HGNC:27299|Ensembl:ENSG00000203836|Vega:OTTHUMG00000043167 1 1q21.2 neuroblastoma breakpoint family, member 24 protein-coding NBPF24 neuroblastoma breakpoint family, member 24 O - 20121230 -9606 728913 RCN1P2 XXyac-R12DG2.2 - HGNC:39204 13 13q14.13 reticulocalbin 1, EF-hand calcium binding domain pseudogene 2 pseudo RCN1P2 reticulocalbin 1, EF-hand calcium binding domain pseudogene 2 O - 20121230 -9606 728917 FAM108A2 - - HGNC:28394 1 1q21.2 Abhydrolase domain-containing protein FAM108A2 pseudo FAM108A2 family with sequence similarity 108, member A2 O - 20121230 -9606 728920 LOC728920 XXyac-YX155B6.2 - - 1 1q21.2 phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 728921 HAUS1P1 - - HGNC:43760 5 5q31.3 HAUS augmin-like complex, subunit 1 pseudogene 1 pseudo HAUS1P1 HAUS augmin-like complex, subunit 1 pseudogene 1 O - 20121230 -9606 728927 ZNF736 - - HGNC:32467|Ensembl:ENSG00000234444|Vega:OTTHUMG00000156537 7 7q11.21 zinc finger protein 736 protein-coding ZNF736 zinc finger protein 736 O KRAB-containing zinc-finger repressor protein 20121230 -9606 728929 TCEB3CL - HsT828 HGNC:31007|Ensembl:ENSG00000234298|Vega:OTTHUMG00000180383 18 18q21.1 transcription elongation factor B polypeptide 3C-like protein-coding TCEB3CL transcription elongation factor B polypeptide 3C-like O RNA polymerase II transcription factor SIII subunit A3-like-1|eloA3-like-1|elongin-A3-like-1|transcription elongation factor B polypeptide 3C-like-1 20121230 -9606 728931 LOC728931 - - - 5 5p12 adenosylmethionine decarboxylase 1 pseudogene pseudo - - - - 20121230 -9606 728932 GPR89C - - HGNC:31985|Ensembl:ENSG00000196644|Vega:OTTHUMG00000013744 1 1q21.1 G protein-coupled receptor 89C protein-coding GPR89C G protein-coupled receptor 89C O Putative protein GPR89C|putative Golgi pH regulator C 20121230 -9606 728933 RPL23AP60 - RPL23A_26_1111 HGNC:35966 10 10q26.3 ribosomal protein L23a pseudogene 60 pseudo RPL23AP60 ribosomal protein L23a pseudogene 60 O - 20121230 -9606 728936 NBPF16 - AG3 HGNC:31996|MIM:614005|Ensembl:ENSG00000203827|Vega:OTTHUMG00000040624 1 1q21.2 neuroblastoma breakpoint family, member 16 protein-coding NBPF16 neuroblastoma breakpoint family, member 16 O neuroblastoma breakpoint family member 16 20121230 -9606 728937 RPS26P25 - RPS26_10_512 HGNC:35730 4 4q26 ribosomal protein S26 pseudogene 25 pseudo RPS26P25 ribosomal protein S26 pseudogene 25 O - 20121230 -9606 728938 SUB1P1 hCG_17750 hCG17750 HGNC:32300 8 8p23.1 SUB1 homolog (S. cerevisiae) pseudogene 1 pseudo SUB1P1 SUB1 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 728939 PDZK1P1 RP11-94I2.3 - HGNC:31974 1 1q21.1 PDZ domain containing 1 pseudogene 1 pseudo PDZK1P1 PDZ domain containing 1 pseudogene 1 O - 20121230 -9606 728945 PPIAL4F RP11-763B22.5 - HGNC:33999 1 1q21.2 peptidylprolyl isomerase A (cyclophilin A)-like 4F protein-coding PPIAL4F peptidylprolyl isomerase A (cyclophilin A)-like 4F O cyclophilin-LC (COAS2) pseudogene 20121230 -9606 728947 LOC728947 - - - 7 7q11.21 zinc finger protein 680 pseudogene pseudo - - - - 20121230 -9606 728953 RPS19P3 - RPS19_4_1350 HGNC:23560 14 14q13.2 ribosomal protein S19 pseudogene 3 pseudo RPS19P3 ribosomal protein S19 pseudogene 3 O - 20121102 -9606 728955 FAM25D RP11-592B15.2 bA592B15.5 HGNC:23588 10 10q11.23 family with sequence similarity 25, member D protein-coding FAM25D family with sequence similarity 25, member D O - 20121021 -9606 728957 ZNF705D - ZNF705C HGNC:33202|Ensembl:ENSG00000215343|Vega:OTTHUMG00000165474 8 8p23.1 zinc finger protein 705D protein-coding ZNF705D zinc finger protein 705D O putative zinc finger protein 705C|zinc finger protein 705C 20121211 -9606 728962 RPL7P56 - RPL7_33_1817 HGNC:35588 X Xq26.3 ribosomal protein L7 pseudogene 56 pseudo RPL7P56 ribosomal protein L7 pseudogene 56 O - 20121230 -9606 728963 RPS15AP10 - RPS15A_4_42 HGNC:37001 1 1p34.1 ribosomal protein S15a pseudogene 10 pseudo RPS15AP10 ribosomal protein S15a pseudogene 10 O - 20121230 -9606 728970 PPP1R2P4 RP11-189B4.1 - HGNC:16319 13 13q14.13 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 4 pseudo PPP1R2P4 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 4 O - 20121230 -9606 728971 RPS27AP7 - RPS27A_2_217 HGNC:35735 2 2p16.3 ribosomal protein S27a pseudogene 7 pseudo RPS27AP7 ribosomal protein S27a pseudogene 7 O - 20121230 -9606 728975 LOC728975 - - - 11 11q13.1 uncharacterized LOC728975 unknown - - - - 20121102 -9606 728978 LOC728978 RP11-790G19.2 - Vega:OTTHUMG00000018423 10 10q22.1 uncharacterized LOC728978 miscRNA - - - - 20121230 -9606 728979 RPL10AP9 - RPL10A_3_593 HGNC:35947 5 5q14.3 ribosomal protein L10a pseudogene 9 pseudo RPL10AP9 ribosomal protein L10a pseudogene 9 O - 20121230 -9606 728989 LOC728989 - - - 1 1q21.1 phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 728990 SLC9A3P3 RP11-324H6.4 - HGNC:33492 10 10q11.23 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 3 pseudo SLC9A3P3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 3 O - 20121230 -9606 728992 RPL7AP11 - RPL7A_5_397 HGNC:35242 3 3q13.33 ribosomal protein L7a pseudogene 11 pseudo RPL7AP11 ribosomal protein L7a pseudogene 11 O - 20121230 -9606 728996 LOC728996 - - - 12 12p12.3 methyltransferase like 8 pseudogene pseudo - - - - 20121230 -9606 728999 LOC728999 hCG_1783052 - - X Xp22.2 hCG1783052 unknown - - - - 20120318 -9606 729004 RPL9P2 - RPL9_10_1518 HGNC:17049 17 17p12 ribosomal protein L9 pseudogene 2 pseudo RPL9P2 ribosomal protein L9 pseudogene 2 O - 20121230 -9606 729008 LOC729008 - - - 17 17q21.31 putative protein FAM215A-like pseudo - - - - 20121209 -9606 729009 FTH1P20 - FTHL20 HGNC:37639 2 2q31.3 ferritin, heavy polypeptide 1 pseudogene 20 pseudo FTH1P20 ferritin, heavy polypeptide 1 pseudogene 20 O - 20121230 -9606 729012 SKA2L - Em:AC006313.1|FAM33B HGNC:23122 9 9q33.2 spindle and kinetochore associated complex subunit 2-like pseudo SKA2L spindle and kinetochore associated complex subunit 2-like O - 20121230 -9606 729013 LOC729013 - - - 11 11p15.3 uncharacterized LOC729013 miscRNA - - - - 20121230 -9606 729020 LOC729020 hCG_2024410 - - 10 10q24.33 rcRPE protein-coding - - - hCG2024410|rcRPE protein 20121230 -9606 729021 LOC729021 - - - 4 4q26 uncharacterized LOC729021 unknown - - - - 20120511 -9606 729023 LOC729023 - - - 10 10q11.23 protein FAM22D-like pseudo - - - - 20121230 -9606 729025 SLC15A5 - - HGNC:33455|Ensembl:ENSG00000188991|Vega:OTTHUMG00000168793 12 12p12.3 solute carrier family 15, member 5 protein-coding SLC15A5 solute carrier family 15, member 5 O Peptide/histidine transporter ENSP00000340402|solute carrier family 15 member 5 20121230 -9606 729032 RPL36P20 - - HGNC:44564 3 3p22.1 ribosomal protein L36 pseudogene 20 pseudo RPL36P20 ribosomal protein L36 pseudogene 20 O - 20121230 -9606 729033 LOC729033 - - - 1 1q42.13 putative uncharacterized protein FLJ44672-like pseudo - - - - 20121209 -9606 729040 LOC729040 - - - 5 5q14.3 uncharacterized LOC729040 unknown - - - - 20121230 -9606 729041 LOC729041 - - - 1 1p33 fatty acid amide hydrolase pseudogene pseudo - - - - 20121230 -9606 729042 RPL29P3 - RPL29_19_1356 HGNC:23565 14 14q13.3 ribosomal protein L29 pseudogene 3 pseudo RPL29P3 ribosomal protein L29 pseudogene 3 O - 20121230 -9606 729046 LOC729046 - - - 10 10q22.1 ribosomal protein L17 pseudogene pseudo - - - - 20121230 -9606 729047 LOC729047 - - - 10 10q11.23 uncharacterized LOC729047 unknown - - - - 20120511 -9606 729050 KRT18P29 - - HGNC:33398 2 2q31.3 keratin 18 pseudogene 29 pseudo KRT18P29 keratin 18 pseudogene 29 O - 20121230 -9606 729056 LOC729056 - - - 21 21q22.2 KIAA1462 pseudogene pseudo - - - - 20121230 -9606 729057 LOC729057 - - - 22 22q11.1 translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene pseudo - - - - 20121209 -9606 729059 LOC729059 - - Ensembl:ENSG00000227868|Vega:OTTHUMG00000003226 1 1p36.12 uncharacterized LOC729059 protein-coding - - - uncharacterized protein LOC729059 20121230 -9606 729073 FAM92A1P1 - FAM92A2 HGNC:32278 15 15q15.1 family with sequence similarity 92, member A2 (pseudogene) pseudo FAM92A1P1 family with sequence similarity 92, member A1 pseudogene 1 O - 20121230 -9606 729075 RPL36AP23 - RPL36A_6_507 HGNC:36002 4 4q25 ribosomal protein L36a pseudogene 23 pseudo RPL36AP23 ribosomal protein L36a pseudogene 23 O - 20121230 -9606 729078 LOC729078 - - Vega:OTTHUMG00000022543 X Xq27.1 uncharacterized LOC729078 unknown - - - - 20120511 -9606 729079 RPSAP21 - RPSA_2_180 HGNC:36928 1 1q43 ribosomal protein SA pseudogene 21 pseudo RPSAP21 ribosomal protein SA pseudogene 21 O - 20121230 -9606 729080 LOC729080 - - - 5 5q31.3 glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo - - - - 20121230 -9606 729082 OIP5-AS1 - cyrano HGNC:43563 15 15q15.1 OIP5 antisense RNA 1 miscRNA OIP5-AS1 OIP5 antisense RNA 1 O - 20121230 -9606 729083 LOC729083 - - - 3 3p22.1 uncharacterized LOC729083 unknown - - - - 20120508 -9606 729085 FAM198A - C3orf41 HGNC:24485|Ensembl:ENSG00000144649|Vega:OTTHUMG00000156449 3 3p22.1 family with sequence similarity 198, member A protein-coding FAM198A family with sequence similarity 198, member A O protein FAM198A 20121230 -9606 729086 LOC729086 - - - 1 1q21.2 vesicular, overexpressed in cancer, prosurvival protein 1 pseudogene pseudo - - - - 20121230 -9606 729088 LOC729088 - - - 6 6q27 uncharacterized LOC729088 unknown - - - - 20121017 -9606 729092 AGAP5 - CTGLF2 HGNC:23467|Ensembl:ENSG00000172650|Vega:OTTHUMG00000018473 10 10q22.2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 5 protein-coding AGAP5 ArfGAP with GTPase domain, ankyrin repeat and PH domain 5 O AGAP-5|arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5|centaurin, gamma-like family, member 2|centaurin-gamma-like family member 2 20121230 -9606 729096 BMS1P4 - BMS1LP4 HGNC:23652|Vega:OTTHUMG00000018478 10 10q22.2 BMS1 pseudogene 4 pseudo BMS1P4 BMS1 pseudogene 4 O - 20121230 -9606 729097 RPS4XP14 - RPS4P14|RPS4X_5_1190 HGNC:36737 12 12p13.33 ribosomal protein S4X pseudogene 14 pseudo RPS4XP14 ribosomal protein S4X pseudogene 14 O - 20121230 -9606 729101 LOC729101 - - - 11 11q12.3-q13.1 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 729102 HNRNPA1P22 - - HGNC:39540 3 3p22.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 22 pseudo HNRNPA1P22 heterogeneous nuclear ribonucleoprotein A1 pseudogene 22 O - 20121230 -9606 729119 HMGB2P1 - - HGNC:39174 19 19p13.3 high mobility group box 2 pseudogene 1 pseudo HMGB2P1 high mobility group box 2 pseudogene 1 O - 20121230 -9606 729121 LOC729121 - - - 2 2q12.3 uncharacterized LOC729121 miscRNA - - - - 20121230 -9606 729123 RPL7P21 - RPL7_10_623 HGNC:36762 5 5q31.3 ribosomal protein L7 pseudogene 21 pseudo RPL7P21 ribosomal protein L7 pseudogene 21 O - 20121230 -9606 729126 LOC729126 - - - 7 7q11.21 GrpE-like 1, mitochondrial (E. coli) pseudogene pseudo - - - - 20121230 -9606 729131 KRT8P7 - - HGNC:33361 11 11q23.3 keratin 8 pseudogene 7 pseudo KRT8P7 keratin 8 pseudogene 7 O - 20121230 -9606 729138 RPLP1P2 RP11-435F13.2 RPLP1_2_185 HGNC:36210 1 1q43 ribosomal protein, large, P1 pseudogene 2 pseudo RPLP1P2 ribosomal protein, large, P1 pseudogene 2 O - 20121230 -9606 729141 LOC729141 - - - 2 2q32.1 chromosome 18 open reading frame 25 pseudogene pseudo - - - - 20121230 -9606 729146 RPL9P28 - RPL9_16_1554 HGNC:36445 17 17q21.32 ribosomal protein L9 pseudogene 28 pseudo RPL9P28 ribosomal protein L9 pseudogene 28 O - 20121230 -9606 729148 NUS1P1 - - HGNC:38472 X Xp11.23 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 1 pseudo NUS1P1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 729150 RPS3AP14 - RPS3A_7_401 HGNC:35715 3 3q21.2 ribosomal protein S3a pseudogene 14 pseudo RPS3AP14 ribosomal protein S3a pseudogene 14 O - 20121230 -9606 729156 GTF2IRD1P1 tcag7.967 - HGNC:44136 7 7q11.21 GTF2I repeat domain containing 1 pseusogene 1 pseudo GTF2IRD1P1 GTF2I repeat domain containing 1 pseusogene 1 O - 20121230 -9606 729159 LOC729159 - - - 16 16q21 UPF0607 protein ENSP00000381418-like protein-coding - - - Putative UPF0607 protein ENSP00000381418 20121230 -9606 729162 LOC729162 - - - X Xp22.33 uncharacterized LOC729162 protein-coding - - - - 20121209 -9606 729163 FABP5P2 RP11-381L18.2 FABP5L2 HGNC:31060 13 13q14.3 fatty acid binding protein 5 pseudogene 2 pseudo FABP5P2 fatty acid binding protein 5 pseudogene 2 O - 20121230 -9606 729164 LOC729164 hCG_1732469 - - 2 2q13 hCG1732469 unknown - - - - 20121230 -9606 729171 ANKRD20A8P RP11-146D12.2 ANKRD20B HGNC:23666 2 2q11.1 ankyrin repeat domain 20 family, member A8, pseudogene pseudo ANKRD20A8P ankyrin repeat domain 20 family, member A8, pseudogene O - 20121230 -9606 729173 LOC729173 - - - 11 11q23.3 uncharacterized LOC729173 unknown - - - - 20121230 -9606 729175 LOC729175 - - - 4 4p15.2 uncharacterized LOC729175 protein-coding - - - - 20121209 -9606 729176 LOC729176 - - - 6 6q24.3 katanin p80 subunit B-like 1 pseudogene pseudo - - - - 20121230 -9606 729177 LOC729177 - - - 6 6p22.3 uncharacterized LOC729177 miscRNA - - - - 20121230 -9606 729178 STXBP5-AS1 - - HGNC:44183 6 6q24.3 STXBP5 antisense RNA 1 miscRNA STXBP5-AS1 STXBP5 antisense RNA 1 O - 20121230 -9606 729182 FAM91A3P RP11-403I13.6 - HGNC:32273 1 1q21.2 family with sequence similarity 91, member A3 pseudogene pseudo FAM91A3P family with sequence similarity 91, member A3 pseudogene O - 20121230 -9606 729187 LOC729187 - - - 10 10q22.3 uncharacterized LOC729187 unknown - - - - 20120511 -9606 729188 RPS26P58 - RPS26_33_1769 HGNC:36571 X Xp22.11 ribosomal protein S26 pseudogene 58 pseudo RPS26P58 ribosomal protein S26 pseudogene 58 O - 20121230 -9606 729196 UNC93B5 - - HGNC:34051 11 11q13.2 unc-93 homolog B5 pseudogene (C. elegans) pseudo UNC93B5 unc-93 homolog B5 pseudogene (C. elegans) O - 20121230 -9606 729198 ANAPC10P1 - ANAPC10P HGNC:33976 1 1p32.3 anaphase promoting complex subunit 10 pseudogene 1 pseudo ANAPC10P1 anaphase promoting complex subunit 10 pseudogene 1 O - 20121230 -9606 729200 LOC729200 - - - 6 6q25.1 small nuclear ribonucleoprotein polypeptide B pseudogene pseudo - - - - 20121230 -9606 729201 SPACA5B UNQ6288/PRO20753 - HGNC:19142|Ensembl:ENSG00000171478|Vega:OTTHUMG00000021465 X Xp11.23 sperm acrosome associated 5B protein-coding SPACA5B sperm acrosome associated 5B O SLLP-X|lysozyme-like protein 5|sperm acrosome-associated protein 5|sperm-specific lysozyme-like protein X 20121230 -9606 729203 RPL31P30 - RPL31_2_226 HGNC:35679 2 2p15 ribosomal protein L31 pseudogene 30 pseudo RPL31P30 ribosomal protein L31 pseudogene 30 O - 20121230 -9606 729208 RPL21P14 - HsT16795|RPL21_53_1436 HGNC:31029 15 15q22.1 ribosomal protein L21 pseudogene 14 pseudo RPL21P14 ribosomal protein L21 pseudogene 14 O - 20121230 -9606 729209 RPSAP26 - RPSA_3_227 HGNC:36195 2 2p15 ribosomal protein SA pseudogene 26 pseudo RPSAP26 ribosomal protein SA pseudogene 26 O - 20121230 -9606 729211 KRT18P15 - KRT18L5 HGNC:32449 3 3p22.3 keratin 18 pseudogene 15 pseudo KRT18P15 keratin 18 pseudogene 15 O - 20121230 -9606 729212 RPL13AP26 - RPL13A_13_1745 HGNC:35492 22 22q12.2 ribosomal protein L13a pseudogene 26 pseudo RPL13AP26 ribosomal protein L13a pseudogene 26 O - 20121230 -9606 729215 RPL32P29 - RPL32_8_1362 HGNC:35771 14 14q21.3 ribosomal protein L32 pseudogene 29 pseudo RPL32P29 ribosomal protein L32 pseudogene 29 O - 20121230 -9606 729217 LOC729217 - - - 16 16q21 emopamil binding protein-like pseudogene pseudo - - - - 20121230 -9606 729218 LOC729218 - - - 4 4q26 uncharacterized LOC729218 pseudo - - - - 20121230 -9606 729220 FLJ45513 - - - 17 17q21.33 uncharacterized LOC729220 protein-coding - - - uncharacterized protein LOC729220 20121230 -9606 729222 LOC729222 - - - 12 12p11.23 liprin-beta-1-like pseudo - - - - 20121209 -9606 729224 LOC729224 hCG_2044152 - - 2 2q33.1 uncharacterized LOC729224 unknown - - - - 20121230 -9606 729230 CCR2 hCG_14621 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R HGNC:1603|MIM:601267|Ensembl:ENSG00000121807|Vega:OTTHUMG00000156466 3 3p21.31 chemokine (C-C motif) receptor 2 protein-coding CCR2 chemokine (C-C motif) receptor 2 O C-C chemokine receptor type 2|MCP-1 receptor|monocyte chemoattractant protein 1 receptor|monocyte chemotactic protein 1 receptor 20121230 -9606 729233 PRR20B - - HGNC:37220|Ensembl:ENSG00000204918 13 13q21.1 proline rich 20B protein-coding PRR20B proline rich 20B O FLJ40296 protein family member|proline-rich protein 20B 20121230 -9606 729234 FAHD2CP - - HGNC:44135 2 2q11.1 fumarylacetoacetate hydrolase domain containing 2C, pseudogene pseudo FAHD2CP fumarylacetoacetate hydrolase domain containing 2C, pseudogene O - 20121230 -9606 729236 RPS13P2 - RPS13_1_51 HGNC:36364 1 1p32.3 ribosomal protein S13 pseudogene 2 pseudo RPS13P2 ribosomal protein S13 pseudogene 2 O - 20121230 -9606 729238 SFTPA2 RP11-589B3.4 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-A|SPA2|SPAII HGNC:10799|MIM:178642|Ensembl:ENSG00000185303|Vega:OTTHUMG00000018566 10 10q22.3 surfactant protein A2 protein-coding SFTPA2 surfactant protein A2 O 35 kDa pulmonary surfactant-associated protein|alveolar proteinosis protein|collectin 5|pulmonary surfactant-associated protein A2|surfactant, pulmonary-associated protein A2A 20121230 -9606 729240 PRR20C - - HGNC:37221|Ensembl:ENSG00000229665 13 13q21.1 proline rich 20C protein-coding PRR20C proline rich 20C O FLJ40296 protein family member|proline-rich protein 20C 20121209 -9606 729241 RPL21P117 - RPL21_53_1439 HGNC:35987 15 15q22.2 ribosomal protein L21 pseudogene 117 pseudo RPL21P117 ribosomal protein L21 pseudogene 117 O - 20121230 -9606 729246 PRR20D - - HGNC:37222|Ensembl:ENSG00000227151 13 13q21.1 proline rich 20D protein-coding PRR20D proline rich 20D O FLJ40296 protein family member|proline-rich protein 20D 20121209 -9606 729248 LOC729248 - - - 2 2q13 zinc finger and BTB domain containing 45 pseudogene pseudo - - - - 20121230 -9606 729249 KLHL2P1 - MAVP1 HGNC:44046 4 4q26 kelch-like 2, Mayven (Drosophila) pseudogene 1 pseudo KLHL2P1 kelch-like 2, Mayven (Drosophila) pseudogene 1 O - 20121230 -9606 729250 PRR20E - - HGNC:37223|Ensembl:ENSG00000234278 13 13q21.1 proline rich 20E protein-coding PRR20E proline rich 20E O FLJ40296 protein family member|proline-rich protein 20E 20121209 -9606 729252 KRT16P1 - KRT14P|KRT16P HGNC:6420 17 17p11.2 keratin 16 pseudogene 1 pseudo KRT16P1 keratin 16 pseudogene 1 O - 20121230 -9606 729254 LOC729254 hCG_2045843 - - 2 2q32.3 hCG2045843 protein-coding - - - - 20120511 -9606 729257 RPS24P4 - RPS24_2_174 HGNC:35852 1 1q42.2 ribosomal protein S24 pseudogene 4 pseudo RPS24P4 ribosomal protein S24 pseudogene 4 O - 20121230 -9606 729258 RPS11P6 - RPS11_2_1249 HGNC:36693 12 12q14.2 ribosomal protein S11 pseudogene 6 pseudo RPS11P6 ribosomal protein S11 pseudogene 6 O - 20121230 -9606 729259 RPL17P43 - RPL17_24_1526 HGNC:35996 17 17p11.2 ribosomal protein L17 pseudogene 43 pseudo RPL17P43 ribosomal protein L17 pseudogene 43 O - 20121230 -9606 729262 FAM22B - bA119F19.1 HGNC:23445 10 10q22.3 family with sequence similarity 22, member B pseudo FAM22B family with sequence similarity 22, member B O - 20121230 -9606 729264 TP53TG3D - - HGNC:44657|Ensembl:ENSG00000205456|Vega:OTTHUMG00000132469 16 16p11.2 TP53 target 3D protein-coding TP53TG3D TP53 target 3D O - 20121230 -9606 729268 LOC729268 hCG_2013212 - - 14 14q22.1 hCG2013212 protein-coding - - - - 20120318 -9606 729274 RPS2P53 - RPS2_24_1626 HGNC:36690 19 19p13.2 ribosomal protein S2 pseudogene 53 pseudo RPS2P53 ribosomal protein S2 pseudogene 53 O - 20121230 -9606 729275 LOC729275 - - - X Xp11.23 uncharacterized LOC729275 unknown - - - - 20121018 -9606 729277 RPL23AP47 - RPL23A_21_778 HGNC:36576 6 6q27 ribosomal protein L23a pseudogene 47 pseudo RPL23AP47 ribosomal protein L23a pseudogene 47 O - 20121209 -9606 729279 RPL28P5 - RPL28_2_1625 HGNC:35766 19 19p13.2 ribosomal protein L28 pseudogene 5 pseudo RPL28P5 ribosomal protein L28 pseudogene 5 O - 20121230 -9606 729288 ZNF286B - ZNF286C|ZNF286L|ZNF590 HGNC:33241|Ensembl:ENSG00000249459|Vega:OTTHUMG00000178136 17 17p11.2 zinc finger protein 286B protein-coding ZNF286B zinc finger protein 286B O putative zinc finger protein 286B|zinc finger 286C pseudogene|zinc finger protein 590 20121230 -9606 729291 LOC729291 - - - 12 12p11.22 uncharacterized LOC729291 unknown - - - - 20120511 -9606 729293 RPS18P10 - RPS18_2_763 HGNC:35566 6 6q24.1 ribosomal protein S18 pseudogene 10 pseudo RPS18P10 ribosomal protein S18 pseudogene 10 O - 20121230 -9606 729296 LOC729296 - - - 20 20q13.33 uncharacterized LOC729296 miscRNA - - - - 20121209 -9606 729298 PCNPP3 - - HGNC:41975 12 12q14.3 PEST containing nuclear protein pseudogene 3 pseudo PCNPP3 PEST containing nuclear protein pseudogene 3 O - 20121230 -9606 729299 PMS2P8 - - HGNC:33516 7 7q11.23 postmeiotic segregation increased 2 pseudogene 8 pseudo PMS2P8 postmeiotic segregation increased 2 pseudogene 8 O - 20121209 -9606 729301 RPL17P9 - RPL17_1_25 HGNC:36230 1 1p36.11 ribosomal protein L17 pseudogene 9 pseudo RPL17P9 ribosomal protein L17 pseudogene 9 O - 20121230 -9606 729305 LOC729305 - - - 11 11q25 uncharacterized LOC729305 unknown - - - - 20121230 -9606 729307 LOC729307 - - - 4 4q28.3 uncharacterized LOC729307 unknown - - - - 20120511 -9606 729308 RPL31P45 hCG_1642535 RPL31_22_1025 HGNC:36796 10 10p12.31 ribosomal protein L31 pseudogene 45 pseudo RPL31P45 ribosomal protein L31 pseudogene 45 O - 20121230 -9606 729310 KYNUP2 - - HGNC:39200 17 17p11.2 kynureninase pseudogene 2 pseudo KYNUP2 kynureninase pseudogene 2 O - 20121230 -9606 729313 LOC729313 - - - 16 16q23.2 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 729316 LOC729316 - - - 15 15q21.1 POM121 membrane glycoprotein pseudogene pseudo - - - - 20121230 -9606 729317 LOC729317 - - - 2 2p14 voltage-dependent anion channel 2 pseudogene pseudo - - - - 20121230 -9606 729321 KYNUP1 - - HGNC:39199 17 17p11.2 kynureninase pseudogene 1 pseudo KYNUP1 kynureninase pseudogene 1 O - 20121230 -9606 729323 KYNUP3 - - HGNC:39201 17 17p11.2 kynureninase pseudogene 3 pseudo KYNUP3 kynureninase pseudogene 3 O - 20121209 -9606 729324 LOC729324 hCG_1986447 - - 2 2p14 hCG1986447 unknown - - - - 20120622 -9606 729327 LOC729327 - - - 20 20p11.1 mediator complex subunit 28 pseudogene pseudo - - - - 20121230 -9606 729330 OC90 - PLA2L HGNC:8100|MIM:601658|Ensembl:ENSG00000253117|Ensembl:ENSG00000258417|Vega:OTTHUMG00000164672|Vega:OTTHUMG00000170745 8 8q24.22 otoconin 90 protein-coding OC90 otoconin 90 O otoconin-90|phospholipase A2 homolog 20121230 -9606 729332 RPL27P8 - RPL27_3_316 HGNC:36012 2 2q33.3 ribosomal protein L27 pseudogene 8 pseudo RPL27P8 ribosomal protein L27 pseudogene 8 O - 20121230 -9606 729334 LOC729334 - - - 17 17p11.2 cytospin B pseudogene pseudo - - - - 20121230 -9606 729338 CETN4P - - HGNC:35450 4 4q27 centrin EF-hand protein 4, pseudogene pseudo CETN4P centrin EF-hand protein 4, pseudogene O - 20121230 -9606 729340 RPL17P36 - RPL17_11_1102 HGNC:36051 10 10q26.11 ribosomal protein L17 pseudogene 36 pseudo RPL17P36 ribosomal protein L17 pseudogene 36 O - 20121230 -9606 729342 LOC729342 - - - 2 2q33.1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 729344 KRT8P24 - - HGNC:33376 15 15q21.1 keratin 8 pseudogene 24 pseudo KRT8P24 keratin 8 pseudogene 24 O - 20121230 -9606 729347 AKR1B1P3 - ALDRL3 HGNC:422 11 11p15.1 aldo-keto reductase family 1, member B1 pseudogene 3 pseudo AKR1B1P3 aldo-keto reductase family 1, member B1 pseudogene 3 O - 20121230 -9606 729348 LOC729348 - - - 2 2p14 LINE1 retrotransposable element other - - - - 20120511 -9606 729349 RPL17P16 - RPL17_4_369 HGNC:35939 3 3p21.31 ribosomal protein L17 pseudogene 16 pseudo RPL17P16 ribosomal protein L17 pseudogene 16 O - 20121230 -9606 729353 LOC729353 - - - 15 - uncharacterized LOC729353 protein-coding - - - - 20120318 -9606 729355 TP53TG3B - - HGNC:37202|Ensembl:ENSG00000261509|Vega:OTTHUMG00000176461 16 16p11.2 TP53 target 3B protein-coding TP53TG3B TP53 target 3B O TP53-inducible gene 3 protein|TP53-target gene 3 protein 20121230 -9606 729356 LOC729356 - - - 1 1p36.21 PRAME family member 2 pseudogene pseudo - - - - 20121230 -9606 729359 PLIN4 - KIAA1881|S3-12 HGNC:29393|MIM:613247|Ensembl:ENSG00000167676|Vega:OTTHUMG00000167571 19 19p13.3 perilipin 4 protein-coding PLIN4 perilipin 4 O adipocyte protein S3-12|perilipin-4 20121230 -9606 729362 RPL36AP37 - RPL36A_14_1122 HGNC:36969 11 11p15.1 ribosomal protein L36a pseudogene 37 pseudo RPL36AP37 ribosomal protein L36a pseudogene 37 O - 20121230 -9606 729366 LOC729366 - - - 2 2q33.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 729368 PRAMEF23 - PRAMEF5L HGNC:34394 1 1p36.21 PRAME family member 23 protein-coding PRAMEF23 PRAME family member 23 O - 20121209 -9606 729369 LOC729369 - - - 13 - ankyrin repeat domain-containing protein 36C-like pseudo - - - - 20121209 -9606 729374 RPS10P6 - RPS10_1_98 HGNC:35765 1 1q21.3 ribosomal protein S10 pseudogene 6 pseudo RPS10P6 ribosomal protein S10 pseudogene 6 O - 20121230 -9606 729375 FAM86HP - - HGNC:42359 3 3q22.1 family with sequence similarity 86, member A pseudogene pseudo FAM86HP family with sequence similarity 86, member H, pseudogene O - 20121230 -9606 729384 TRIM49L1 - TRIM48L1|TRIM49L HGNC:37217 11 11q14.3 tripartite motif containing 49-like 1 protein-coding TRIM49L1 tripartite motif containing 49-like 1 O tripartite motif-containing 49-like 1|tripartite motif-containing protein 49-like protein 1 20121230 -9606 729389 RPS6P25 - RPS6_13_1629 HGNC:35948 19 19p13.2 ribosomal protein S6 pseudogene 25 pseudo RPS6P25 ribosomal protein S6 pseudogene 25 O - 20121230 -9606 729391 RFWD2P1 - RFWD2P HGNC:31900 18 18p11.23 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase pseudogene 1 pseudo RFWD2P1 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase pseudogene 1 O - 20121230 -9606 729392 POM121L6P - bA239L20.2 HGNC:31343 6 6p21.3 POM121 transmembrane nucleoporin-like 6 pseudogene pseudo POM121L6P POM121 transmembrane nucleoporin-like 6 pseudogene O - 20121230 -9606 729396 GAGE12J - GAGE11 HGNC:17778|MIM:300733|Ensembl:ENSG00000224659|Vega:OTTHUMG00000024137 X Xp11.23 G antigen 12J protein-coding GAGE12J G antigen 12J O G antigen 11|GAGE-12J 20121230 -9606 729399 SEPHS1P6 - - HGNC:42168 2 2q33.1 selenophosphate synthetase 1 pseudogene 6 pseudo SEPHS1P6 selenophosphate synthetase 1 pseudogene 6 O - 20121230 -9606 729402 RPL21P16 - RPL21_38_1104 HGNC:31396 10 10q26.12 ribosomal protein L21 pseudogene 16 pseudo RPL21P16 ribosomal protein L21 pseudogene 16 O - 20121230 -9606 729403 GAPDHP61 - GAPDHL6|GAPDL6 HGNC:4155 15 15q22.31 glyceraldehyde 3 phosphate dehydrogenase pseudogene 61 pseudo GAPDHP61 glyceraldehyde 3 phosphate dehydrogenase pseudogene 61 O - 20121230 -9606 729406 PPP1R14BP2 - - HGNC:16329 2 2q33.3 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 2 pseudo PPP1R14BP2 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 2 O - 20121230 -9606 729408 GAGE2D CTD-2248C21.2 CT4.8|GAGE-2D|GAGE-8|GAGE8 HGNC:31959|MIM:300735|Ensembl:ENSG00000240257|Vega:OTTHUMG00000067393 X Xp11.23 G antigen 2D protein-coding GAGE2D G antigen 2D O cancer/testis antigen 4.8 20121209 -9606 729409 LOC729409 - - - 12 12q15 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 pseudogene pseudo - - - - 20121230 -9606 729412 PSMA6P2 - - HGNC:39607 X Xp22.2 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 2 pseudo PSMA6P2 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 2 O - 20121230 -9606 729416 RPLP1P6 hCG_1641617 RPLP1_5_629 HGNC:35809 5 5q33.1 ribosomal protein, large, P1 pseudogene 6 pseudo RPLP1P6 ribosomal protein, large, P1 pseudogene 6 O - 20121230 -9606 729420 C13orf45 - - HGNC:44370|Ensembl:ENSG00000178734 13 13q22.2 chromosome 13 open reading frame 45 protein-coding C13orf45 chromosome 13 open reading frame 45 O uncharacterized protein C13orf45 20121230 -9606 729422 GAGE12C - GAGE-12B HGNC:28402|MIM:300727|Ensembl:ENSG00000237671|Vega:OTTHUMG00000024144 X Xp11.23 G antigen 12C protein-coding GAGE12C G antigen 12C O G antigen 12B/C/D/E|GAGE-12C|g antigen 12C/D/E 20121209 -9606 729423 HNRNPA1P6 - HNRNPA1L|HNRNPA1L1|HNRPA1L HGNC:5032 1 1p32.2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 6 pseudo HNRNPA1P6 heterogeneous nuclear ribonucleoprotein A1 pseudogene 6 O - 20121230 -9606 729428 GAGE12B - GAGE-12B HGNC:26779|Vega:OTTHUMG00000024142 X Xp11.23 G antigen 12B protein-coding GAGE12B G antigen 12B O G antigen 12B/C/D/E|g antigen 12C/D/E 20121023 -9606 729431 GAGE12E RP11-959H17.4 GAGE-12B HGNC:31905|MIM:300729|Ensembl:ENSG00000216649|Vega:OTTHUMG00000024146 X Xp11.23 G antigen 12E protein-coding GAGE12E G antigen 12E O G antigen 12B/C/D/E|GAGE-12E|g antigen 12C/D/E 20121209 -9606 729435 ATP6V1E1P3 - ATP6EL1|ATP6V1EL1 HGNC:858 12 12q14.2 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 3 pseudo ATP6V1E1P3 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 3 O - 20121230 -9606 729438 GATSL2 - - HGNC:37073|Ensembl:ENSG00000198750|Vega:OTTHUMG00000156013 7 7q11.23 GATS protein-like 2 protein-coding GATSL2 GATS protein-like 2 O GATS-like protein 2 20121230 -9606 729440 CCDC61 - - HGNC:33629|Ensembl:ENSG00000104983 19 19q13.32 coiled-coil domain containing 61 protein-coding CCDC61 coiled-coil domain containing 61 O coiled-coil domain-containing protein 61 20121230 -9606 729442 GAGE12H - RP11-959H17.7 HGNC:31908|MIM:300732|Ensembl:ENSG00000224902|Vega:OTTHUMG00000024149 X Xp11.23 G antigen 12H protein-coding GAGE12H G antigen 12H O GAGE-12H 20121209 -9606 729444 LOC729444 - - - 22 22q11.21 uncharacterized LOC729444 miscRNA - - - - 20121230 -9606 729447 GAGE2A - CT4.2|GAGE-2|GAGE-2A|GAGE2 HGNC:4099|MIM:300720|Ensembl:ENSG00000189064|Vega:OTTHUMG00000024143 X Xp11.23 G antigen 2A protein-coding GAGE2A G antigen 2A O G antigen 2A/2B|cancer/testis antigen 4.2|cancer/testis antigen family 4, member 2 20121209 -9606 729449 RPL7P50 - RPL7_28_1618 HGNC:35816 19 19p13.3 ribosomal protein L7 pseudogene 50 pseudo RPL7P50 ribosomal protein L7 pseudogene 50 O - 20121230 -9606 729450 SUSD2P2 - - HGNC:35197 22 22q11.21 sushi domain containing 2 pseudogene 2 pseudo SUSD2P2 sushi domain containing 2 pseudogene 2 O - 20121230 -9606 729451 LOC729451 - - - 14 14q22.2 uncharacterized LOC729451 unknown - - - - 20120511 -9606 729453 PMS2P6 - PMS2L14 HGNC:33514 7 7q11.23 postmeiotic segregation increased 2 pseudogene 6 pseudo PMS2P6 postmeiotic segregation increased 2 pseudogene 6 O - 20121230 -9606 729454 DSTNP4 - - HGNC:44548 3 3p22.2 destrin (actin depolymerizing factor) pseudogene 4 protein-coding DSTNP4 destrin (actin depolymerizing factor) pseudogene 4 O destrin-like 20121209 -9606 729458 LOC729458 - - Ensembl:ENSG00000196589 19 19p13.2 methyl-CpG-binding domain protein 3-like 2-like protein-coding - - - - 20121209 -9606 729461 LOC729461 - - - 22 22q11.21 uncharacterized LOC729461 protein-coding - - - - 20121230 -9606 729466 LOC729466 - - - 11 11q21 signal recognition particle 14 kDa protein-like pseudo - - - - 20121209 -9606 729467 HSD52 HSD52 - - 1 1p32.1 uncharacterized LOC729467 miscRNA - - - - 20121230 -9606 729468 LOC729468 - - - 2 2q13 putative PGM5-like protein 1 protein-coding - - - - 20120318 -9606 729475 RAD51AP2 - - HGNC:34417|Ensembl:ENSG00000214842|Vega:OTTHUMG00000151761 2 2p24.2 RAD51 associated protein 2 protein-coding RAD51AP2 RAD51 associated protein 2 O RAD51-associated protein 2 20121230 -9606 729480 RPL23AP5 - RPL23AL|RPL23A_35_1465|RPL2B|c367G8.3|rjd10 HGNC:14194 16 16p13.3 ribosomal protein L23a pseudogene 5 pseudo RPL23AP5 ribosomal protein L23a pseudogene 5 O - 20121230 -9606 729484 RPL21P18 - RPL21_46_1252 HGNC:28362 12 12q14.3 ribosomal protein L21 pseudogene 18 pseudo RPL21P18 ribosomal protein L21 pseudogene 18 O - 20121230 -9606 729486 IL9RP3 - - HGNC:6033 16 16p13.3 interleukin 9 receptor pseudogene 3 pseudo IL9RP3 interleukin 9 receptor pseudogene 3 O - 20121230 -9606 729490 NCOR1P2 - - HGNC:42997 17 17p11.2 nuclear receptor corepressor 1 pseudogene 2 pseudo NCOR1P2 nuclear receptor corepressor 1 pseudogene 2 O - 20121230 -9606 729493 GAPDHP38 - - HGNC:37792 19 19q13.32 glyceraldehyde 3 phosphate dehydrogenase pseudogene 38 pseudo GAPDHP38 glyceraldehyde 3 phosphate dehydrogenase pseudogene 38 O - 20121230 -9606 729494 ARPC3P3 - - HGNC:39432 11 11q21 actin related protein 2/3 complex, subunit 3 pseudogene 3 pseudo ARPC3P3 actin related protein 2/3 complex, subunit 3 pseudogene 3 O - 20121230 -9606 729495 FAM108A5P - FAM108A5 HGNC:34042 22 22q11.21 putative abhydrolase domain-containing protein FAM108A5 pseudo FAM108A5P family with sequence similarity 108, member A5, pseudogene O - 20121230 -9606 729496 LOC729496 - - - 6 6q25.1 coiled-coil domain containing 59 pseudogene pseudo - - - - 20121230 -9606 729497 LOC729497 - - - 4 4q31.21 nuclear receptor coactivator 4 pseudogene pseudo - - - - 20121230 -9606 729500 RPL12P14 - RPL12_1_13 HGNC:36495 1 1p36.21 ribosomal protein L12 pseudogene 14 pseudo RPL12P14 ribosomal protein L12 pseudogene 14 O - 20121230 -9606 729501 ZNF962P - - HGNC:39250 13 13q11 zinc finger protein 962, pseudogene pseudo ZNF962P zinc finger protein 962, pseudogene O - 20121230 -9606 729505 HMGN2P24 - - HGNC:39389 3 3p22.1 high mobility group nucleosomal binding domain 2 pseudogene 24 pseudo HMGN2P24 high mobility group nucleosomal binding domain 2 pseudogene 24 O - 20121230 -9606 729506 LOC729506 - - - 5 5p15.31 uncharacterized LOC729506 miscRNA - - - - 20121230 -9606 729515 TMEM242 RP11-96F3.3 BM033|C6orf35 HGNC:17206|Ensembl:ENSG00000215712|Vega:OTTHUMG00000015893 6 6q25.3 transmembrane protein 242 protein-coding TMEM242 transmembrane protein 242 O UPF0463 transmembrane protein C6orf35 20121230 -9606 729516 PRAMEF24 - - - 1 1p36.21 putative PRAME family member 24 unknown - - - - 20121209 -9606 729522 AACSP1 - AACSL HGNC:18226 5 5q35.3 acetoacetyl-CoA synthetase pseudogene 1 pseudo AACSP1 acetoacetyl-CoA synthetase pseudogene 1 O - 20121230 -9606 729524 FEM1AP4 RP11-484H12.4 - HGNC:39832 13 13q11 fem-1 homolog a (C. elegans) pseudogene 4 pseudo FEM1AP4 fem-1 homolog a (C. elegans) pseudogene 4 O - 20121230 -9606 729528 PRAMEF14 RP11-584P2.2 - HGNC:13576|Ensembl:ENSG00000204481|Vega:OTTHUMG00000007916 1 1p36.21 PRAME family member 14 protein-coding PRAMEF14 PRAME family member 14 O - 20121230 -9606 729530 CNOT6LP1 - - HGNC:32355 15 15q21.3 CCR4-NOT transcription complex, subunit 6-like pseudogene 1 pseudo CNOT6LP1 CCR4-NOT transcription complex, subunit 6-like pseudogene 1 O - 20121230 -9606 729532 LOC729532 - - - 2 2q33.2 zinc finger protein 207 pseudogene pseudo - - - - 20121230 -9606 729533 FAM72A RP11-312O7.1 LMPIP HGNC:24044|MIM:614710|Ensembl:ENSG00000196550|Vega:OTTHUMG00000042552 1 1q32.1 family with sequence similarity 72, member A protein-coding FAM72A family with sequence similarity 72, member A O LMP1-induced protein|Ugene|latent membrane protein 1-induced protein|protein FAM72A 20121230 -9606 729535 FAM207BP - - HGNC:39715 13 13q11 family with sequence similarity 207, member B, pseudogene pseudo FAM207BP family with sequence similarity 207, member B, pseudogene O - 20121230 -9606 729536 RPL34P31 - RPL34_16_1528 HGNC:36899 17 17q11.1 ribosomal protein L34 pseudogene 31 pseudo RPL34P31 ribosomal protein L34 pseudogene 31 O - 20121230 -9606 729540 RGPD6 - RGP6|RGPD7|RanBP2L1|RanBP2L2 HGNC:32419|MIM:612709|Ensembl:ENSG00000183054|Vega:OTTHUMG00000153196 2 2q13 RANBP2-like and GRIP domain containing 6 protein-coding RGPD6 RANBP2-like and GRIP domain containing 6 O RANBP2-like and GRIP domain-containing protein 5/6|RANBP2-like and GRIP domain-containing protein 7|ran-binding protein 2-like 1/2|ranBP2-like 1/2 20121230 -9606 729545 LOC729545 - - - 7 7q11.23 WBSCR19-like protein 5-like protein-coding - - - - 20120511 -9606 729557 LOC729557 - - - 20 20q11.22 density-regulated protein pseudogene pseudo - - - - 20121230 -9606 729558 LOC729558 - - - 4 4q31.3 uncharacterized LOC729558 unknown - - - - 20120511 -9606 729561 NAP1L1P1 - - HGNC:38004 11 11q24.2 nucleosome assembly protein 1-like 1 pseudogene 1 pseudo NAP1L1P1 nucleosome assembly protein 1-like 1 pseudogene 1 O - 20121230 -9606 729562 LOC729562 - - - 17 17q11.1 uncharacterized LOC729562 unknown - - - - 20120825 -9606 729564 HMGN2P41 - - HGNC:39412 16 16p11.1 high mobility group nucleosomal binding domain 2 pseudogene 41 pseudo HMGN2P41 high mobility group nucleosomal binding domain 2 pseudogene 41 O - 20121230 -9606 729565 NDUFB8P2 - - HGNC:33978 17 17q23.1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 2 pseudo NDUFB8P2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 2 O - 20121230 -9606 729566 ZBTB8OSP1 - - HGNC:19043 4 4q31.3 zinc finger and BTB domain containing 8 opposite strand pseudogene 1 pseudo ZBTB8OSP1 zinc finger and BTB domain containing 8 opposite strand pseudogene 1 O - 20121230 -9606 729568 SUSD2P1 - - HGNC:33889 22 22q11.21 sushi domain containing 2 pseudogene 1 pseudo SUSD2P1 sushi domain containing 2 pseudogene 1 O - 20121209 -9606 729574 LOC729574 - - Ensembl:ENSG00000237847 1 1p36.13 UPF0627 protein ENSP00000341061/ENSP00000339743 protein-coding - - - - 20121230 -9606 729582 DIRC3 - - HGNC:17805|MIM:608262 2 2q35 disrupted in renal carcinoma 3 miscRNA DIRC3 disrupted in renal carcinoma 3 O - 20121230 -9606 729583 C6orf100 DAMC-4K22.1 dJ25J6.5 HGNC:21195 6 6p22.1 chromosome 6 open reading frame 100 unknown C6orf100 chromosome 6 open reading frame 100 O - 20121224 -9606 729587 LOC729587 - - - 1 1p36.13 UPF0627 protein ENSP00000341061/ENSP00000339743-like protein-coding - - - - 20121209 -9606 729595 HMGB3P22 - - HGNC:39314 5 5q35.3 high mobility group box 3 pseudogene 22 pseudo HMGB3P22 high mobility group box 3 pseudogene 22 O - 20121230 -9606 729597 SPDYE6 hCG_1989182 - HGNC:35465 7 7q22.1 speedy homolog E6 (Xenopus laevis) protein-coding SPDYE6 speedy homolog E6 (Xenopus laevis) O putative speedy protein E6 20121230 -9606 729602 LOC729602 - - - 18 18p11.21 nuclear pore complex interacting protein pseudogene pseudo - - - - 20121230 -9606 729603 LOC729603 - - - 6 6q25.3 calcium binding protein P22 pseudogene pseudo - - - - 20121230 -9606 729608 RPF2P1 RP11-353C18.53-001 BXDC1P|C20orf53|RPF2P|bA353C18.4 HGNC:16186 20 20q11.22 ribosome production factor 2 homolog (S. cerevisiae) pseudogene 1 pseudo RPF2P1 ribosome production factor 2 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 729609 LOC729609 - - - X Xp22.12 uncharacterized LOC729609 miscRNA - - - - 20121230 -9606 729610 FAHD2P1 - FAHD2P HGNC:32441 12 12q15 fumarylacetoacetate hydrolase domain containing 2 pseudogene 1 pseudo FAHD2P1 fumarylacetoacetate hydrolase domain containing 2 pseudogene 1 O - 20121230 -9606 729611 RPL29P30 - RPL29_20_1448 HGNC:36601 15 15q23 ribosomal protein L29 pseudogene 30 pseudo RPL29P30 ribosomal protein L29 pseudogene 30 O - 20121230 -9606 729614 FLJ37453 hCG_2008140 - - 1 1p36.21 uncharacterized LOC729614 miscRNA - - - - 20121230 -9606 729617 RPL23AP74 hCG_2001000 RPL23A_37_1566 HGNC:36148 17 17q23.2 ribosomal protein L23a pseudogene 74 pseudo RPL23AP74 ribosomal protein L23a pseudogene 74 O - 20121230 -9606 729621 RPL36AP46 - RPL36A_22_1565 HGNC:35812 17 17q23.2 ribosomal protein L36a pseudogene 46 pseudo RPL36AP46 ribosomal protein L36a pseudogene 46 O - 20121230 -9606 729627 PRR23A - - HGNC:37172|Ensembl:ENSG00000206260|Vega:OTTHUMG00000160635 3 3q23 proline rich 23A protein-coding PRR23A proline rich 23A O UPF0572 protein ENSP00000372650|proline-rich protein 23A|proline-rich protein 23C 20121230 -9606 729630 LOC729630 tcag7.1130 - - 7 7q21.11 dynein, light chain, LC8-type 1 pseudogene pseudo - - - - 20121230 -9606 729633 MRS2P2 - - HGNC:33942 12 12q21.1 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 2 pseudo MRS2P2 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 729634 KRT18P26 - - HGNC:33395 2 2p13.1 keratin 18 pseudogene 26 pseudo KRT18P26 keratin 18 pseudogene 26 O - 20120420 -9606 729635 HMGB3P19 - - HGNC:39311 6 6q25.2 high mobility group box 3 pseudogene 19 pseudo HMGB3P19 high mobility group box 3 pseudogene 19 O - 20121230 -9606 729646 RPL31P4 - RPL31_28_1375 HGNC:23546 14 14q23.1 ribosomal protein L31 pseudogene 4 pseudo RPL31P4 ribosomal protein L31 pseudogene 4 O - 20121230 -9606 729648 ZNF812 - - HGNC:33242|Ensembl:ENSG00000224689|Vega:OTTHUMG00000167867 19 19p13.2 zinc finger protein 812 protein-coding ZNF812 zinc finger protein 812 O putative zinc finger protein 812 20121230 -9606 729650 METTL15P3 - - HGNC:39558 X Xp22.11 methyltransferase like 15 pseudogene 3 pseudo METTL15P3 methyltransferase like 15 pseudogene 3 O - 20121230 -9606 729652 LOC729652 - - - 16 16p13.3 uncharacterized LOC729652 unknown - - - - 20120511 -9606 729654 LOC729654 - - - 19 19p13.12 inositol polyphosphate multikinase pseudogene pseudo - - - - 20121230 -9606 729658 LOC729658 - - - 6 6q26 uncharacterized LOC729658 unknown - - - - 20121230 -9606 729659 S100A11P1 - S100A11P|S100A14 HGNC:10491 7 7q22.1 S100 calcium binding protein A11 pseudogene 1 pseudo S100A11P1 S100 calcium binding protein A11 pseudogene 1 O - 20121230 -9606 729662 RPL22P3 RP11-430L17.1 RPL22_1_15 HGNC:36804 1 1p36.13 ribosomal protein L22 pseudogene 3 pseudo RPL22P3 ribosomal protein L22 pseudogene 3 O - 20121230 -9606 729665 CCDC175 - C14orf38|c14_5395 HGNC:19847|Ensembl:ENSG00000151838 14 14q23.1 coiled-coil domain containing 175 protein-coding CCDC175 coiled-coil domain containing 175 O uncharacterized protein C14orf38 20121230 -9606 729666 LDHAP5 - LDHAL5 HGNC:6540 10 10q26.11 lactate dehydrogenase A pseudogene 5 pseudo LDHAP5 lactate dehydrogenase A pseudogene 5 O - 20121230 -9606 729667 TRMT112P3 - - HGNC:44022 17 17q23.2 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 3 pseudo TRMT112P3 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 3 O - 20121230 -9606 729668 LOC729668 - - - 10 10p11.23 golgin A6 family, member A pseudogene pseudo - - - - 20121230 -9606 729673 PPIAP18 - - HGNC:32454 3 3p21.32 peptidylprolyl isomerase A (cyclophilin A) pseudogene 18 pseudo PPIAP18 peptidylprolyl isomerase A (cyclophilin A) pseudogene 18 O - 20121230 -9606 729674 LOC729674 - - - 3 3q22.1 proteasome (prosome, macropain) 26S subunit, ATPase, 2 pseudogene pseudo - - - - 20121230 -9606 729677 RPL7P16 - RPL7_5_405 HGNC:36591 3 3q22.1 ribosomal protein L7 pseudogene 16 pseudo RPL7P16 ribosomal protein L7 pseudogene 16 O - 20121230 -9606 729678 LOC729678 - - - 5 5q35.3 uncharacterized LOC729678 miscRNA - - - - 20121230 -9606 729679 RPS2P51 - RPS2_25_1632 HGNC:36422 19 19p13.11 ribosomal protein S2 pseudogene 51 pseudo RPS2P51 ribosomal protein S2 pseudogene 51 O - 20121230 -9606 729680 LOC729680 - - - 13 13q12.11 uncharacterized LOC729680 unknown - - - - 20121102 -9606 729681 LOC729681 - - - 6 6q27 uncharacterized LOC729681 unknown - - - - 20120511 -9606 729682 KRT17P3 - - HGNC:33697 17 17q11.2 keratin 17 pseudogene 3 pseudo KRT17P3 keratin 17 pseudogene 3 O - 20121230 -9606 729683 LOC729683 - - - 17 17q23.3 uncharacterized LOC729683 miscRNA - - - - 20121230 -9606 729686 LOC729686 - - - 15 15q24.1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 729687 HMGN2P25 - - HGNC:39392 3 3q23 high mobility group nucleosomal binding domain 2 pseudogene 25 pseudo HMGN2P25 high mobility group nucleosomal binding domain 2 pseudogene 25 O - 20121230 -9606 729689 FAM90A2P - - HGNC:32250 8 8p23.1 family with sequence similarity 90, member A2 pseudogene pseudo FAM90A2P family with sequence similarity 90, member A2, pseudogene O - 20121230 -9606 729696 LOC729696 - - - 8 8q21.11 uncharacterized LOC729696 protein-coding - - - - 20120511 -9606 729707 LOC729707 - - - 5 5q35.3 transmembrane and tetratricopeptide repeat containing 4 pseudogene pseudo - - - - 20121230 -9606 729708 TPI1P1 - RCTPI1 HGNC:35449 1 1p31.1 triosephosphate isomerase 1 pseudogene 1 pseudo TPI1P1 triosephosphate isomerase 1 pseudogene 1 O - 20121230 -9606 729722 LOC729722 - - - 15 15q11.1 ankyrin repeat domain-containing protein ENSP00000383090-like protein-coding - - - putative ankyrin repeat domain-containing protein ENSP00000383090 20121101 -9606 729723 DNAJC27-AS1 - - HGNC:42943 2 2p23.3 DNAJC27 antisense RNA 1 miscRNA DNAJC27-AS1 DNAJC27 antisense RNA 1 O - 20121230 -9606 729727 RPL12P1 DAQB-126H3.6 CICK0721Q.1|RPL12-L|RPL12_5_682|dJ570F3.5 HGNC:13976 6 6p21.32 ribosomal protein L12 pseudogene 1 pseudo RPL12P1 ribosomal protein L12 pseudogene 1 O - 20121230 -9606 729732 LOC729732 - - - 8 8p23.1 uncharacterized LOC729732 miscRNA - - - - 20121230 -9606 729737 LOC729737 - - - 1 1p36.33 uncharacterized LOC729737 miscRNA - - - - 20121230 -9606 729739 LOC729739 - - - 15 15q24.1 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 729747 ZNF878 - - HGNC:37246|Ensembl:ENSG00000257446|Vega:OTTHUMG00000169370 19 19p13.2 zinc finger protein 878 protein-coding ZNF878 zinc finger protein 878 O - 20121230 -9606 729756 PRSS44 - TESSP-4|TESSP4 HGNC:37324 3 3p21.31 protease, serine, 44 protein-coding PRSS44 protease, serine, 44 O serine protease 44|testis serine protease 4 20121230 -9606 729759 OR4F29 - OR7-21 HGNC:31275|HPRD:14971 1 1p36.33 olfactory receptor, family 4, subfamily F, member 29 protein-coding OR4F29 olfactory receptor, family 4, subfamily F, member 29 O olfactory receptor 4F3/4F16/4F29|olfactory receptor OR1-1|olfactory receptor OR7-21|seven transmembrane helix receptor 20121230 -9606 729760 RPL12P18 - RPL12_3_246 HGNC:36750 2 2p11.2 ribosomal protein L12 pseudogene 18 pseudo RPL12P18 ribosomal protein L12 pseudogene 18 O - 20121230 -9606 729764 RPL23AP45 - RPL23A_19_648 HGNC:36896 5 5q35.3 ribosomal protein L23a pseudogene 45 pseudo RPL23AP45 ribosomal protein L23a pseudogene 45 O - 20121209 -9606 729767 CEACAM18 - - HGNC:31949|Ensembl:ENSG00000213822|Vega:OTTHUMG00000151557 19 19q13.41 carcinoembryonic antigen-related cell adhesion molecule 18 protein-coding CEACAM18 carcinoembryonic antigen-related cell adhesion molecule 18 O - 20121230 -9606 729769 UQCRHP2 - - HGNC:38045 2 2p23.3 ubiquinol-cytochrome c reductase hinge protein pseudogene 2 pseudo UQCRHP2 ubiquinol-cytochrome c reductase hinge protein pseudogene 2 O - 20121230 -9606 729770 LOC729770 - - - 2 2q36.1 uncharacterized LOC729770 unknown - - - - 20121230 -9606 729774 LOC729774 - - - 18 18p11.21 family with sequence similarity 207, member A pseudogene pseudo - - - - 20121230 -9606 729779 PSAT1P3 - - HGNC:43989 1 1p31.1 phosphoserine aminotransferase 1 pseudogene 3 pseudo PSAT1P3 phosphoserine aminotransferase 1 pseudogene 3 O - 20121230 -9606 729780 RPS10P8 - RPS10_1_104 HGNC:36606 1 1q23.1 ribosomal protein S10 pseudogene 8 pseudo RPS10P8 ribosomal protein S10 pseudogene 8 O - 20121230 -9606 729786 GOLGA8CP - GOLGA8C HGNC:32375 15 15q11.2 golgin A8 family, member C, pseudogene pseudo GOLGA8CP golgin A8 family, member C, pseudogene O - 20121230 -9606 729789 RPS15P5 - RPS15_3_372 HGNC:35536 3 3p14.3 ribosomal protein S15 pseudogene 5 pseudo RPS15P5 ribosomal protein S15 pseudogene 5 O - 20121230 -9606 729790 ARL6IP1P3 - - HGNC:44972 11 11q14.1 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 3 pseudo ARL6IP1P3 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 3 O - 20121230 -9606 729798 RPL23AP63 - RPL23A_28_1140 HGNC:35502 11 11p11.2 ribosomal protein L23a pseudogene 63 pseudo RPL23AP63 ribosomal protein L23a pseudogene 63 O - 20121230 -9606 729799 SEC14L1P1 - - HGNC:44189 11 11p11.2 SEC14-like 1 pseudogene 1 pseudo SEC14L1P1 SEC14-like 1 pseudogene 1 O - 20121230 -9606 729800 LOC729800 - - - 10 10q26.13 ZP domain-containing protein LOC729800-like protein-coding - - - Putative ZP domain-containing protein LOC729800 20120825 -9606 729806 ZNF731P - ZNF731 HGNC:32471 1 1q44 zinc finger protein 731, pseudogene pseudo ZNF731P zinc finger protein 731, pseudogene O - 20121230 -9606 729809 DNM1P34 - DNM1DN8-1|DNM1DN8-5|DNM1DN8@ HGNC:35181 15 15q24.2 DNM1 pseudogene 34 pseudo DNM1P34 DNM1 pseudogene 34 O - 20121230 -9606 729810 LOC729810 - - - 1 1q44 uncharacterized LOC729810 unknown - - - - 20121017 -9606 729815 LOC729815 - - - 10 10q22.3 uncharacterized LOC729815 unknown - - - - 20121230 -9606 729816 DHFRP2 - - HGNC:2863 6 6p21.33 dihydrofolate reductase pseudogene 2 pseudo DHFRP2 dihydrofolate reductase pseudogene 2 O - 20121230 -9606 729817 LOC729817 - - - 1 1p31.1 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 729828 ST13P20 - - HGNC:38863 1 1p31.1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 20 pseudo ST13P20 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 20 O - 20121230 -9606 729830 FAM160A1 - - HGNC:34237|Ensembl:ENSG00000164142|Vega:OTTHUMG00000161675 4 4q31.3 family with sequence similarity 160, member A1 protein-coding FAM160A1 family with sequence similarity 160, member A1 O protein FAM160A1 20121230 -9606 729835 LOC729835 - - - 17 17q12 ubiquitin-fold modifier 1 pseudogene pseudo - - - - 20121230 -9606 729838 GGTLC4P - GGT HGNC:33428 22 22q11.23 gamma-glutamyltransferase light chain 4 pseudogene pseudo GGTLC4P gamma-glutamyltransferase light chain 4 pseudogene O - 20121230 -9606 729839 LOC729839 - - - 17 17q12 DTW domain containing 2 pseudogene pseudo - - - - 20121230 -9606 729842 RPS2P50 - RPS2_23_1541 HGNC:36034 17 17q12 ribosomal protein S2 pseudogene 50 pseudo RPS2P50 ribosomal protein S2 pseudogene 50 O - 20121230 -9606 729852 LOC729852 tcag7.903 - - 7 7p21.3 uncharacterized LOC729852 miscRNA - - - - 20121230 -9606 729856 LOC729856 - - - 1 1p36.11 elongation factor 1-alpha-like pseudo - - - - 20121230 -9606 729857 RGPD2 - NUP358|RANBP2L2|RGP2 HGNC:32415|MIM:612705|Ensembl:ENSG00000185304|HPRD:18641|Vega:OTTHUMG00000153276 2 2p11.2 RANBP2-like and GRIP domain containing 2 protein-coding RGPD2 RANBP2-like and GRIP domain containing 2 O RANBP2-like and GRIP domain-containing protein 2|Ran binding protein 2-like 2|nucleoporin|ran-binding protein 2-like 2|ranBP2-like 2 20121230 -9606 729859 LOC729859 - - - 2 2p11.2 WW domain binding protein 1 pseudogene pseudo - - - - 20121230 -9606 729860 LOC729860 - - - 11 11q25 uncharacterized LOC729860 unknown - - - - 20120710 -9606 729862 LSP1P3 - - HGNC:39718 5 5p13.3 lymphocyte-specific protein 1 pseudogene 3 pseudo LSP1P3 lymphocyte-specific protein 1 pseudogene 3 O - 20121230 -9606 729866 LOC729866 hCG_1994895 - - 1 1q23.1 hCG1994895 unknown - - - - 20120622 -9606 729867 LOC729867 - - - 1 1q23.2 uncharacterized LOC729867 unknown - - - - 20120511 -9606 729870 LOC729870 - - - 4 4q31.3 uncharacterized LOC729870 unknown - - - - 20120511 -9606 729873 TBC1D3 - PRC17|TBC1D3A|TBC1D3F HGNC:19031|MIM:607741|Ensembl:ENSG00000197681|Vega:OTTHUMG00000164417 17 17q12 TBC1 domain family, member 3 protein-coding TBC1D3 TBC1 domain family, member 3 O Rab GTPase-activating protein PRC17|TBC1 domain family member 3|TBC1 domain family, member 3F|prostate cancer gene 17 protein|protein TRE17-alpha 20121230 -9606 729877 TBC1D3H - - HGNC:30708|MIM:610811|Ensembl:ENSG00000242384|Vega:OTTHUMG00000132712 17 17q12 TBC1 domain family, member 3H protein-coding TBC1D3H TBC1 domain family, member 3H O TBC1 domain family member 3-like protein LOC729837 20121230 -9606 729879 LOC729879 - - - 2 2q37.1 uncharacterized LOC729879 unknown - - - - 20120511 -9606 729885 VN1R101P - - HGNC:37424 19 19q13.42 vomeronasal 1 receptor 101 pseudogene pseudo VN1R101P vomeronasal 1 receptor 101 pseudogene O - 20121230 -9606 729887 LOC729887 - - - 16 16q23.3 uncharacterized LOC729887 unknown - - - - 20120511 -9606 729894 ELMO2P1 - - HGNC:38008 15 15q11.2 engulfment and cell motility 2 pseudogene 1 pseudo ELMO2P1 engulfment and cell motility 2 pseudogene 1 O - 20121230 -9606 729898 ZBTB8OSP2 - - HGNC:30326 2 2q37.1 zinc finger and BTB domain containing 8 opposite strand pseudogene 2 pseudo ZBTB8OSP2 zinc finger and BTB domain containing 8 opposite strand pseudogene 2 O - 20121230 -9606 729900 LOC729900 - - - 15 15q11.2 golgin subfamily A member 6-like protein 2-like pseudo - - - - 20121209 -9606 729903 RPS16P10 - RPS16_5_1636 HGNC:35739 19 19p12 ribosomal protein S16 pseudogene 10 pseudo RPS16P10 ribosomal protein S16 pseudogene 10 O - 20121230 -9606 729909 RPL36AP26 - RPL36A_8_787 HGNC:36758 7 7p21.2 ribosomal protein L36a pseudogene 26 pseudo RPL36AP26 ribosomal protein L36a pseudogene 26 O - 20121230 -9606 729911 LOC729911 - - - 15 15q25.1 uncharacterized LOC729911 miscRNA - - - - 20121230 -9606 729915 LOC729915 bA110H4.2 - - 5 5p13.2 putative POM121-like protein 1 unknown - - - uncharacterized protein LOC729915 20120726 -9606 729920 ISPD hCG_1745121 MDDGA7|Nip HGNC:37276|MIM:614631|Ensembl:ENSG00000214960|Vega:OTTHUMG00000152447 7 7p21.2 isoprenoid synthase domain containing protein-coding ISPD isoprenoid synthase domain containing O 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein|4-diphosphocytidyl-2C-methyl-D-erythritol synthase homolog|isoprenoid synthase domain-containing protein|notch1-induced protein 20121230 -9606 729927 RPS20P27 - RPS20_12_1158 HGNC:36154 11 11q14.1 ribosomal protein S20 pseudogene 27 pseudo RPS20P27 ribosomal protein S20 pseudogene 27 O - 20121230 -9606 729930 LOC729930 - - - 1 1p22.2 chromosome 11 open reading frame 74 pseudogene pseudo - - - - 20121230 -9606 729941 LOC729941 - - - 14 14q24.2 PDZ domain containing 11 pseudogene pseudo - - - - 20121230 -9606 729944 ZNF75CP - ZNF75C HGNC:13148 11 11q14.1 zinc finger protein 75C, pseudogene pseudo ZNF75CP zinc finger protein 75C, pseudogene O - 20121230 -9606 729945 LOC729945 - - - 16 16p13.13 Rho GTPase activating protein 21 pseudogene pseudo - - - - 20121230 -9606 729948 CDC26P1 TCAG_1970866 CDC26P HGNC:22770 7 7q32.1 cell division cycle 26 homolog (S. cerevisiae) pseudogene 1 pseudo CDC26P1 cell division cycle 26 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 729950 LOC729950 - - - 18 18q11.2 uncharacterized LOC729950 miscRNA - - - - 20121230 -9606 729952 HMGB3P6 - - HGNC:39283 1 1q23.3 high mobility group box 3 pseudogene 6 pseudo HMGB3P6 high mobility group box 3 pseudogene 6 O - 20121230 -9606 729955 RPL18AP5 - RPL18A_1_27 HGNC:36777 1 1p36.11 ribosomal protein L18a pseudogene 5 pseudo RPL18AP5 ribosomal protein L18a pseudogene 5 O - 20121230 -9606 729956 SHISA7 hCG_2039146 - HGNC:35409|Ensembl:ENSG00000187902|Vega:OTTHUMG00000154240 19 19q13.42 shisa homolog 7 (Xenopus laevis) protein-coding SHISA7 shisa homolog 7 (Xenopus laevis) O UPF0626 protein A|protein shisa-7 20121230 -9606 729960 LOC729960 - - - 11 11p11.12 NADPH oxidase 4 pseudogene pseudo - - - - 20121230 -9606 729962 RPL21P71 - RPL21_12_416 HGNC:36049 3 3q24 ribosomal protein L21 pseudogene 71 pseudo RPL21P71 ribosomal protein L21 pseudogene 71 O - 20121230 -9606 729966 LOC729966 - - - 19 19p13.11 uncharacterized LOC729966 pseudo - - - - 20121230 -9606 729967 MORN2 hCG_1818386 BLOCK27|MOPT HGNC:30166|Ensembl:ENSG00000188010|Vega:OTTHUMG00000128589 2 2p22.1 MORN repeat containing 2 protein-coding MORN2 MORN repeat containing 2 O MORN motif protein in testis|MORN repeat-containing protein 2|protein containing single MORN motif in testis 20121230 -9606 729968 LOC729968 - - - 2 2q36.3 uncharacterized LOC729968 unknown - - - - 20121221 -9606 729970 LOC729970 - - - 1 1p21.3 hCG2028352-like miscRNA - - - - 20121230 -9606 729973 LOC729973 - - - 1 1p36.11 uncharacterized LOC729973 pseudo - - - - 20121230 -9606 729974 LOC729974 - - - 19 19q13.42 ret finger protein-like 4A-like protein-coding - - - - 20121209 -9606 729975 FLJ30403 - - - 19 19q13.41 uncharacterized LOC729975 miscRNA - - - - 20121230 -9606 729978 LOC729978 - - - 16 16p13.13 nuclear pore complex interacting protein pseudogene pseudo - - - - 20121230 -9606 729987 LOC729987 - - - 1 1p21.3 uncharacterized LOC729987 miscRNA - - - - 20121230 -9606 729991 MEF2BNB - - HGNC:37247|Ensembl:ENSG00000254901|Vega:OTTHUMG00000166546 19 19p13.11 MEF2B neighbor protein-coding MEF2BNB MEF2B neighbor O MEF2B neighbor gene protein|protein MEF2BNB 20121230 -9606 729992 ST13P1 - - HGNC:38715 2 2p25.1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 1 pseudo ST13P1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 1 O - 20121230 -9606 729993 SHISA9 - CKAMP44 HGNC:37231|MIM:613346|Ensembl:ENSG00000237515|Vega:OTTHUMG00000154258 16 16p13.12 shisa homolog 9 (Xenopus laevis) protein-coding SHISA9 shisa homolog 9 (Xenopus laevis) O cystine-knot AMPAR modulating protein|protein shisa-9 20121230 -9606 729995 LOC729995 hCG_1817208 - - 6 6q27 hCG1817208 unknown - - - - 20121230 -9606 729998 LOC729998 - - - 7 7q33 eukaryotic translation elongation factor 1 gamma pseudogene pseudo - - - - 20121230 -9606 729999 LOC729999 - - - 19 19q13.43 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) pseudogene pseudo - - - - 20121230 -9606 730005 SEC14L6 - - HGNC:40047|Ensembl:ENSG00000214491|Vega:OTTHUMG00000151267 22 22q12.2 SEC14-like 6 (S. cerevisiae) protein-coding SEC14L6 SEC14-like 6 (S. cerevisiae) O putative SEC14-like protein 6 20121230 -9606 730010 BRI3P1 - - HGNC:33533 1 1p21.2 brain protein I3 pseudogene 1 pseudo BRI3P1 brain protein I3 pseudogene 1 O - 20121230 -9606 730013 ABCC6P2 - - HGNC:33353 16 16p13.11 ATP-binding cassette, sub-family C, member 6 pseudogene 2 pseudo ABCC6P2 ATP-binding cassette, sub-family C, member 6 pseudogene 2 O - 20121230 -9606 730016 QRSL1P1 - - HGNC:43667 1 1q24.2 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 1 pseudo QRSL1P1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 1 O - 20121230 -9606 730020 LOC730020 - - - 7 7p15.3 uncharacterized LOC730020 unknown - - - - 20120511 -9606 730021 LOC730021 - - - 3 3q25.1 eukaryotic translation initiation factor 3, subunit J pseudogene pseudo - - - - 20121230 -9606 730023 KRT8P13 - - HGNC:33365 3 3q26.2 keratin 8 pseudogene 13 pseudo KRT8P13 keratin 8 pseudogene 13 O - 20121230 -9606 730029 RPSAP19 RP11-556K13.1 RPSA_2_81 HGNC:36508 1 1p21.1 ribosomal protein SA pseudogene 19 pseudo RPSAP19 ribosomal protein SA pseudogene 19 O - 20121230 -9606 730041 RHOQP2 - - HGNC:37836 2 2q21.1 ras homolog family member Q pseudogene 2 pseudo RHOQP2 ras homolog family member Q pseudogene 2 O - 20121230 -9606 730043 LOC730043 - - - 2 2p21 uncharacterized LOC730043 pseudo - - - - 20121230 -9606 730051 ZNF814 - - HGNC:33258|Ensembl:ENSG00000204514 19 19q13.43 zinc finger protein 814 protein-coding ZNF814 zinc finger protein 814 O putative uncharacterized zinc finger protein 814 20121230 -9606 730052 UBE2V1P2 - - HGNC:32648 3 3q26.31 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 2 pseudo UBE2V1P2 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 2 O - 20121230 -9606 730058 LOC730058 - - - 15 15q24.2 UPF0621 protein C-like protein-coding - - - Putative UPF0621 protein C 20121230 -9606 730061 RPL34P33 - RPL34_18_1640 HGNC:36666 19 19p12 ribosomal protein L34 pseudogene 33 pseudo RPL34P33 ribosomal protein L34 pseudogene 33 O - 20121230 -9606 730066 VN1R103P - - HGNC:37426 19 19q13.42 vomeronasal 1 receptor 103 pseudogene pseudo VN1R103P vomeronasal 1 receptor 103 pseudogene O - 20121230 -9606 730069 LOC730069 - - - 2 2q37.1 nuclear receptor binding factor 2 pseudogene pseudo - - - - 20121230 -9606 730070 RPL26P11 - RPL26_5_125 HGNC:35768 1 1q25.1 ribosomal protein L26 pseudogene 11 pseudo RPL26P11 ribosomal protein L26 pseudogene 11 O - 20121230 -9606 730076 LOC730076 - - - 2 2q21.2 zinc finger domain containing pseudogene pseudo - - - - 20121230 -9606 730081 LOC730081 - - - 1 1p21.2 uncharacterized LOC730081 unknown - - - - 20121230 -9606 730086 ALG1L15P - - HGNC:44384 3 3q25.31 asparagine-linked glycosylation 1-like 15, pseudogene pseudo ALG1L15P asparagine-linked glycosylation 1-like 15, pseudogene O - 20121230 -9606 730087 ZNF726 HC5121 - HGNC:32462|Ensembl:ENSG00000213967|Vega:OTTHUMG00000167681 19 19p12 zinc finger protein 726 protein-coding ZNF726 zinc finger protein 726 O - 20121230 -9606 730091 LOC730091 - - - 3 3q25.31 uncharacterized LOC730091 miscRNA - - - - 20121230 -9606 730092 RRN3P1 - - HGNC:30548|HPRD:14301 16 16p12.2 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 pseudo RRN3P1 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 730094 C16orf52 - - HGNC:27087|Ensembl:ENSG00000185716|Vega:OTTHUMG00000131587 16 16p12.2 chromosome 16 open reading frame 52 protein-coding C16orf52 chromosome 16 open reading frame 52 O uncharacterized protein C16orf52 20121230 -9606 730098 LOC730098 - - - 9 9p13.3 uncharacterized LOC730098 unknown - - - - 20121230 -9606 730100 LOC730100 - - - 2 2p16.3 uncharacterized LOC730100 unknown - - - - 20120815 -9606 730101 LOC730101 - - - 6 6p12.2 uncharacterized LOC730101 miscRNA - - - - 20121230 -9606 730102 LOC730102 - - - 1 1q25.2 quinone oxidoreductase-like protein 2 pseudogene pseudo - - - - 20121230 -9606 730109 LOC730109 - - - 3 3q25.33 uncharacterized LOC730109 protein-coding - - - - 20120511 -9606 730110 LOC730110 - - - 9 9p13.3 zinc finger protein 492 pseudogene pseudo - - - - 20121230 -9606 730112 FAM166B RP11-156G14.3 - HGNC:34242|Ensembl:ENSG00000215187|Vega:OTTHUMG00000019858 9 9p13.3 family with sequence similarity 166, member B protein-coding FAM166B family with sequence similarity 166, member B O protein FAM166B 20121230 -9606 730129 LOC730129 - - - 3 3q26.1 neugrin, neurite outgrowth associated pseudogene pseudo - - - - 20121230 -9606 730130 TMEM229A tcag7.977 - HGNC:37279|Ensembl:ENSG00000234224|Vega:OTTHUMG00000154762 7 7q31.32 transmembrane protein 229A protein-coding TMEM229A transmembrane protein 229A O - 20121230 -9606 730138 PFN1P1 - - HGNC:42989 1 1q24.3 profilin 1 pseudogene 1 pseudo PFN1P1 profilin 1 pseudogene 1 O - 20121230 -9606 730139 LOC730139 - - - 3 3q27.3 uncharacterized LOC730139 unknown - - - - 20120511 -9606 730144 LOC730144 - - - 1 1q25.3 eukaryotic translation initiation factor 1 pseudogene pseudo - - - - 20121230 -9606 730152 GSTA7P - GSTAP2 HGNC:4631 6 6p12.2 glutathione S-transferase alpha 7, pseudogene pseudo GSTA7P glutathione S-transferase alpha 7, pseudogene O - 20121230 -9606 730153 LOC730153 - - - 16 16p11.2 nuclear pore complex interacting protein pseudogene pseudo - - - - 20121209 -9606 730159 LOC730159 - - - 1 1q25.1 uncharacterized LOC730159 protein-coding - - - uncharacterized protein LOC730159 20121230 -9606 730174 NAP1L4P3 - - HGNC:39738 13 13q14.2 nucleosome assembly protein 1-like 4 pseudogene 3 pseudo NAP1L4P3 nucleosome assembly protein 1-like 4 pseudogene 3 O - 20121230 -9606 730177 RPS26P16 - RPS26_3_133 HGNC:35557 1 1q25.2 ribosomal protein S26 pseudogene 16 pseudo RPS26P16 ribosomal protein S26 pseudogene 16 O - 20121230 -9606 730179 LOC730179 - - - 1 1q25.2 uncharacterized LOC730179 unknown - - - - 20120815 -9606 730180 RBBP4P3 - - HGNC:42370 6 6p11.2 retinoblastoma binding protein 4 pseudogene 3 pseudo RBBP4P3 retinoblastoma binding protein 4 pseudogene 3 O - 20121230 -9606 730183 LOC730183 - - - 16 16p11.2 uncharacterized LOC730183 protein-coding - - - uncharacterized protein LOC730183 20121230 -9606 730187 RPS10P9 - RPS10_3_235 HGNC:36451 2 2p14 ribosomal protein S10 pseudogene 9 pseudo RPS10P9 ribosomal protein S10 pseudogene 9 O - 20121230 -9606 730190 ZNF101P2 - - HGNC:44942 1 1q31.2 zinc finger protein 101 pseudogene 2 pseudo ZNF101P2 zinc finger protein 101 pseudogene 2 O - 20121230 -9606 730196 VN1R64P - - HGNC:37384 16 16p11.2 vomeronasal 1 receptor 64 pseudogene pseudo VN1R64P vomeronasal 1 receptor 64 pseudogene O - 20121230 -9606 730198 MEIS1-AS3 - - HGNC:40369 2 2p14 MEIS1 antisense RNA 3 miscRNA MEIS1-AS3 MEIS1 antisense RNA 3 O - 20121230 -9606 730202 LOC730202 - - - 14 14q32.2 uncharacterized LOC730202 unknown - - - - 20120511 -9606 730211 HSP90AA5P - HSP90Ae HGNC:32535 3 3q27.1 heat shock protein 90kDa alpha (cytosolic), class A member 5, pseudogene pseudo HSP90AA5P heat shock protein 90kDa alpha (cytosolic), class A member 5, pseudogene O - 20121230 -9606 730213 RPL5P5 - RPL5_1_139 HGNC:35564 1 1q25.3 ribosomal protein L5 pseudogene 5 pseudo RPL5P5 ribosomal protein L5 pseudogene 5 O - 20121230 -9606 730222 LOC730222 - - - 1 1q32.1 tubulin, alpha 3d pseudogene pseudo - - - - 20121230 -9606 730227 LOC730227 - - - 1 1q32.1 uncharacterized LOC730227 miscRNA - - - - 20121230 -9606 730232 EEF1A1P32 - - HGNC:37909 1 1q31.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 pseudo EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 O - 20121230 -9606 730234 LOC730234 - - - 7 7p12.3 uncharacterized LOC730234 pseudo - - - - 20121230 -9606 730236 LOC730236 - - - 13 13q21.32 uncharacterized LOC730236 unknown - - - - 20120726 -9606 730239 ZDHHC20P4 RP11-264M20.1 - HGNC:39776 13 13q21.33 zinc finger, DHHC-type containing 20 pseudogene 4 pseudo ZDHHC20P4 zinc finger, DHHC-type containing 20 pseudogene 4 O - 20121230 -9606 730246 LOC730246 - - - 1 1q32.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 730249 IRG1 - - HGNC:33904|Ensembl:ENSG00000102794|Vega:OTTHUMG00000017098 13 13q22.3 immunoresponsive 1 homolog (mouse) protein-coding IRG1 immunoresponsive 1 homolog (mouse) O immune-responsive gene 1 protein homolog 20121230 -9606 730255 RPL17P8 - RPL17_4_153 HGNC:35651 1 1q32.1 ribosomal protein L17 pseudogene 8 pseudo RPL17P8 ribosomal protein L17 pseudogene 8 O - 20121230 -9606 730256 LOC730256 - - - 1 1q21.1 uncharacterized LOC730256 protein-coding - - - - 20121209 -9606 730257 LOC730257 - - - 1 1q21.1 uncharacterized LOC730257 pseudo - - - - 20121209 -9606 730262 PPIAL4E - COAS2 HGNC:33997|MIM:608608 1 1q21.2 peptidylprolyl isomerase A (cyclophilin A)-like 4E protein-coding PPIAL4E peptidylprolyl isomerase A (cyclophilin A)-like 4E O - 20121230 -9606 730268 LOC730268 - - - 2 2p11.2 anaphase-promoting complex subunit 1-like protein-coding - - - - 20121209 -9606 730291 ZNF735 - - HGNC:32466 7 7q11.21 zinc finger protein 735 protein-coding ZNF735 zinc finger protein 735 O putative zinc finger protein 735 20121230 -9606 730338 LOC730338 - - - 7 7p12.3 uncharacterized LOC730338 unknown - - - - 20120622 -9606 730376 LOC730376 - - - 7 7p11.2 uncharacterized LOC730376 unknown - - - - 20121230 -9606 730378 LOC730378 tcag7.1293 - - 7 - uncharacterized LOC730378 unknown - - - - 20121230 -9606 730394 GTF2H2D - - HGNC:35418 5 5q13.2 general transcription factor IIH, polypeptide 2D protein-coding GTF2H2D general transcription factor IIH, polypeptide 2D O general transcription factor IIH polypeptide 2-like protein|general transcription factor IIH subunit 2-like protein 20121222 -9606 730441 LOC730441 - - - 7 7q34 trypsin X3 pseudogene pseudo - - - - 20120726 -9606 730535 LOC730535 - - - 12 - cell division cycle protein 27 homolog pseudo - - - - 20121102 -9606 730647 HINT1P1 tcag7.1217 HINTP1 HGNC:18467 7 7q34 histidine triad nucleotide binding protein 1 pseudogene 1 pseudo HINT1P1 histidine triad nucleotide binding protein 1 pseudogene 1 O - 20121230 -9606 730668 LOC730668 - - - 22 22q13.31 dynein heavy chain -like pseudogene pseudo - - - - 20121230 -9606 730747 RPL14P3 - RPL14_2_522 HGNC:36638 4 4q31.1 ribosomal protein L14 pseudogene 3 pseudo RPL14P3 ribosomal protein L14 pseudogene 3 O - 20121230 -9606 730755 KRTAP2-3 hCG_1749898 KAP2.3|KRTAP2.3 HGNC:18906|Ensembl:ENSG00000212724|Vega:OTTHUMG00000133655 17 17q21.2 keratin associated protein 2-3 protein-coding KRTAP2-3 keratin associated protein 2-3 O high sulfur keratin-associated protein 2.4|keratin-associated protein 2-3|keratin-associated protein 2.3 20121230 -9606 730792 LOC730792 - - - X Xq21.2 SWI5-dependent recombination repair 1 pseudogene pseudo - - - - 20121230 -9606 730811 LOC730811 - - - 2 2p25.3 uncharacterized LOC730811 miscRNA - - - - 20121230 -9606 730861 RPS3AP29 - RPS3A_10_823 HGNC:35531 7 7q21.3 ribosomal protein S3a pseudogene 29 pseudo RPS3AP29 ribosomal protein S3a pseudogene 29 O - 20121230 -9606 730888 DEPDC1P1 - - HGNC:31125 15 15q13.3 DEP domain containing 1 pseudogene 1 pseudo DEPDC1P1 DEP domain containing 1 pseudogene 1 O - 20121230 -9606 730909 LOC730909 - - - 15 15q13.2 uncharacterized LOC730909 unknown - - - - 20120710 -9606 730961 LOC730961 - - - 5 - uncharacterized LOC730961 unknown - - - - 20121018 -9606 730971 FLJ36777 - - - 4 - uncharacterized LOC730971 miscRNA - - - - 20121230 -9606 730974 LOC730974 - - - 5 5p12 slowmo homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 730978 CICP5 - - HGNC:37754 1 1q42.11 capicua homolog (Drosophila) pseudogene 5 pseudo CICP5 capicua homolog (Drosophila) pseudogene 5 O - 20121230 -9606 730993 RPS3AP39 - RPS3A_18_1114 HGNC:35490 11 11p15.4 ribosomal protein S3a pseudogene 39 pseudo RPS3AP39 ribosomal protein S3a pseudogene 39 O - 20121230 -9606 731075 LOC731075 tcag7.1227 - - 7 7q36.1 uncharacterized LOC731075 protein-coding - - - - 20120511 -9606 731157 LOC731157 - - - 5 5q14.3 uncharacterized LOC731157 pseudo - - - - 20121209 -9606 731220 RFX8 hCG_1645516 - HGNC:37253|Ensembl:ENSG00000196460|Vega:OTTHUMG00000130693 2 2q11.2 RFX family member 8, lacking RFX DNA binding domain protein-coding RFX8 RFX family member 8, lacking RFX DNA binding domain O DNA-binding protein RFX8|RFX gene family member 8, lacking RFX DNA binding domain|regulatory factor X, 8 20121230 -9606 731223 LOC731223 - - - 14 14q24.3 uncharacterized LOC731223 miscRNA - - - - 20121230 -9606 731275 LOC731275 - - - 1 1q43 uncharacterized LOC731275 miscRNA - - - - 20121230 -9606 731282 LOC731282 - - - 4 4q22.1 uncharacterized LOC731282 protein-coding - - - - 20121209 -9606 731308 DYNLL1P2 - DNCL1P2 HGNC:20724 14 14q31.1 dynein, light chain, LC8-type 1 pseudogene 2 pseudo DYNLL1P2 dynein, light chain, LC8-type 1 pseudogene 2 O - 20121230 -9606 731424 LOC731424 - - - 4 - uncharacterized LOC731424 miscRNA - - - - 20121230 -9606 731467 LOC731467 RP11-255A11.3 - - 9 - uncharacterized LOC731467 protein-coding - - - - 20120710 -9606 731605 LOC731605 - - - 16 - bcl-2-associated transcription factor 1-like pseudo - - - - 20121102 -9606 731631 LOC731631 - - - 7 7p11.2 putative uncharacterized protein FLJ44672-like pseudo - - - - 20121230 -9606 731642 RPL18AP9 - - - 3 3p22.1-p21.33 ribosomal protein L18a pseudogene pseudo - - - - 20121230 -9606 731656 LOC731656 - - - 1 - uncharacterized LOC731656 miscRNA - - - - 20121230 -9606 731688 RPL21P120 - RPL21_57_1527 HGNC:35743 17 17p11.2 ribosomal protein L21 pseudogene 120 pseudo RPL21P120 ribosomal protein L21 pseudogene 120 O - 20121230 -9606 731716 PRKRAP1 - - HGNC:33447 6 - protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene 1 pseudo PRKRAP1 protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene 1 O - 20121230 -9606 731741 RPL32P12 - RPL32_4_459 HGNC:36600 4 4p15.33 ribosomal protein L32 pseudogene 12 pseudo RPL32P12 ribosomal protein L32 pseudogene 12 O - 20121230 -9606 731755 LOC731755 - - - 3 3q23 eukaryotic translation initiation factor 2-alpha kinase 1 pseudogene pseudo - - - - 20121230 -9606 731779 LOC731779 - - - 8 8q24.3 uncharacterized LOC731779 miscRNA - - - - 20121230 -9606 731789 LINC00202-2 - - HGNC:44917 10 10p12.1 long intergenic non-protein coding RNA 202-2 miscRNA LINC00202-2 long intergenic non-protein coding RNA 202-2 O - 20121230 -9606 731932 LOC731932 - - - 13 13q14.13 uncharacterized LOC731932 protein-coding - - - - 20121209 -9606 731996 LOC731996 RP11-175B12.2 - - 13 - uncharacterized LOC731996 protein-coding - - - - 20120318 -9606 732199 RPL29P21 - RPL29_9_1124 HGNC:36322 11 11p15.1 ribosomal protein L29 pseudogene 21 pseudo RPL29P21 ribosomal protein L29 pseudogene 21 O - 20121230 -9606 732210 LOC732210 - - - 18 18p11.21 uncharacterized LOC732210 unknown - - - - 20120710 -9606 732226 LOC732226 - - - 21 21q22.2 uncharacterized LOC732226 unknown - - - - 20120511 -9606 732229 LOC732229 - - - 19 19q13.2 AN1-type zinc finger protein 5-like pseudo - - - - 20121209 -9606 732253 TDRG1 - LINC00532 HGNC:43642 6 6p21.2 testis development related 1 (non-protein coding) miscRNA TDRG1 testis development related 1 (non-protein coding) O - 20121230 -9606 732265 LOC732265 - - - 15 - COMM domain-containing protein 4-like protein-coding - - - - 20121209 -9606 732272 LOC732272 - - - - - uncharacterized LOC732272 unknown - - - - 20120622 -9606 732275 LOC732275 - - - 16 16q24.1 uncharacterized LOC732275 miscRNA - - - - 20121230 -9606 732360 LOC732360 - - - 12 - G/T mismatch-specific thymine DNA glycosylase-like pseudo - - - - 20121102 -9606 732448 LOC732448 - - - 18 18p11.21 coiled-coil domain containing 58 pseudogene pseudo - - - - 20121230 -9606 732538 LOC732538 - - - 17 17q24.2 F-box only protein 36 pseudogene pseudo - - - - 20121230 -9606 735301 SNHG9 - NCRNA00062 HGNC:33102 16 16p13.3 small nucleolar RNA host gene 9 (non-protein coding) miscRNA SNHG9 small nucleolar RNA host gene 9 (non-protein coding) O - 20121230 -9606 751071 METTL12 - U99HG HGNC:33113|Ensembl:ENSG00000214756|Vega:OTTHUMG00000167545 11 11q12.3 methyltransferase like 12 protein-coding METTL12 methyltransferase like 12 O Putative methyltransferase LOC751071, mitochondrial|methyltransferase-like protein 12, mitochondrial 20121230 -9606 751580 LINC00106 - CXYorf8|NCRNA00106 HGNC:31843|Vega:OTTHUMG00000021061 X|Y Xp22.33; Yp11.32 long intergenic non-protein coding RNA 106 miscRNA LINC00106 long intergenic non-protein coding RNA 106 O - 20121023 -9606 751599 TPM3P7 - - HGNC:39170 2 2p24.1 tropomyosin 3 pseudogene 7 pseudo TPM3P7 tropomyosin 3 pseudogene 7 O - 20121230 -9606 751602 LOC751602 - - - 10 10q25.1 tropomyosin 3 pseudogene pseudo - - - - 20121230 -9606 751603 LOC751603 - - - 15 15q14 tropomyosin 3 pseudogene pseudo - - - - 20121230 -9606 751609 DFNB68 - - HGNC:21322|MIM:610419 19 19p13.2 deafness, autosomal recessive 68 unknown DFNB68 deafness, autosomal recessive 68 O - 20120318 -9606 751781 GLC1L - - HGNC:33120 3 3p22-p21 glaucoma 1, open angle, L (adult-onset) unknown GLC1L glaucoma 1, open angle, L (adult-onset) O - 20120318 -9606 751782 DFNB70 - - HGNC:33103 - - deafness, autosomal recessive 70 unknown DFNB70 deafness, autosomal recessive 70 O - 20120318 -9606 751783 DFNB69 - - HGNC:33121 - - deafness, autosomal recessive 69 unknown DFNB69 deafness, autosomal recessive 69 O - 20120318 -9606 751798 AUNX1 - DFNX5 HGNC:31916|MIM:300614 X - auditory neuropathy, X-linked recessive 1 unknown AUNX1 auditory neuropathy, X-linked recessive 1 O - 20120622 -9606 751816 DSERG1 - - - 9 - Down syndrome encephalopathy related protein 1 unknown - - - - 20121230 -9606 751837 LOC751837 - - - 3 3q26.1 WD repeat domain 57 (U5 snRNP specific) pseudogene pseudo - - - - 20121230 -9606 752014 CEMP1 - CP-23|CP23 HGNC:32553|MIM:611113|Ensembl:ENSG00000205923|Vega:OTTHUMG00000177160 16 16p13.3 cementum protein 1 protein-coding CEMP1 cementum protein 1 O cementoblastoma-derived protein 1|cementum protein 23|cementum protein-23 20121230 -9606 767557 SYS1-DBNDD2 hCG_2019108 C20orf169-DBNDD2 HGNC:33535|Ensembl:ENSG00000254806|Vega:OTTHUMG00000166214 20 20q13.12 SYS1-DBNDD2 readthrough (non-protein coding) miscRNA SYS1-DBNDD2 SYS1-DBNDD2 readthrough (non-protein coding) O - 20121230 -9606 767558 LUZP6 - MPD6|MTPNUT HGNC:33955|MIM:611050 7 7q33 leucine zipper protein 6 protein-coding LUZP6 leucine zipper protein 6 O myeloproliferative disease-associated 6 kDa antigen|myeloproliferative disease-associated SEREX antigen|myeloproliferative disease-associated antigen, 6-kD|myotrophin 3'UTR transcript 20121230 -9606 767561 SNORD113-1 - 14q(I-1) HGNC:32980|MIM:613650 14 14q32.31 small nucleolar RNA, C/D box 113-1 snoRNA SNORD113-1 small nucleolar RNA, C/D box 113-1 O - 20121230 -9606 767562 SNORD113-2 - 14q(I-2) HGNC:32981 14 14q32.31 small nucleolar RNA, C/D box 113-2 snoRNA SNORD113-2 small nucleolar RNA, C/D box 113-2 O - 20121230 -9606 767563 SNORD113-3 - 14q(I-3) HGNC:32982 14 14q32.31 small nucleolar RNA, C/D box 113-3 snoRNA SNORD113-3 small nucleolar RNA, C/D box 113-3 O - 20121230 -9606 767564 SNORD113-4 - 14q(I-4) HGNC:32983 14 14q32.31 small nucleolar RNA, C/D box 113-4 snoRNA SNORD113-4 small nucleolar RNA, C/D box 113-4 O - 20121230 -9606 767565 SNORD113-5 - 14q(I-5) HGNC:32984 14 14q32.31 small nucleolar RNA, C/D box 113-5 snoRNA SNORD113-5 small nucleolar RNA, C/D box 113-5 O - 20121230 -9606 767566 SNORD113-6 - 14q(I-6) HGNC:32985 14 14q32.31 small nucleolar RNA, C/D box 113-6 snoRNA SNORD113-6 small nucleolar RNA, C/D box 113-6 O - 20121230 -9606 767567 SNORD113-7 - 14q(I-7) HGNC:32986 14 14q32.31 small nucleolar RNA, C/D box 113-7 snoRNA SNORD113-7 small nucleolar RNA, C/D box 113-7 O - 20121230 -9606 767568 SNORD113-8 - 14q(I-8) HGNC:32987 14 14q32.31 small nucleolar RNA, C/D box 113-8 snoRNA SNORD113-8 small nucleolar RNA, C/D box 113-8 O - 20121230 -9606 767569 SNORD113-9 - 14q(I-9) HGNC:32988 14 14q32.31 small nucleolar RNA, C/D box 113-9 snoRNA SNORD113-9 small nucleolar RNA, C/D box 113-9 O - 20121230 -9606 767575 MRX71 - - HGNC:13367 X Xq24-q27 mental retardation, X-linked 71 unknown MRX71 mental retardation, X-linked 71 O - 20120318 -9606 767577 SNORD114-1 - 14q(II-1) HGNC:32989|MIM:613651 14 14q32 small nucleolar RNA, C/D box 114-1 snoRNA SNORD114-1 small nucleolar RNA, C/D box 114-1 O - 20121230 -9606 767578 SNORD114-2 - 14q(II-2) HGNC:32990 14 14q32 small nucleolar RNA, C/D box 114-2 snoRNA SNORD114-2 small nucleolar RNA, C/D box 114-2 O - 20121230 -9606 767579 SNORD114-3 - 14q(II-3) HGNC:32991 14 14q32 small nucleolar RNA, C/D box 114-3 snoRNA SNORD114-3 small nucleolar RNA, C/D box 114-3 O - 20121230 -9606 767580 SNORD114-4 - 14q(II-4) HGNC:32992 14 14q32 small nucleolar RNA, C/D box 114-4 snoRNA SNORD114-4 small nucleolar RNA, C/D box 114-4 O - 20121230 -9606 767581 SNORD114-5 - 14q(II-5) HGNC:32993 14 14q32 small nucleolar RNA, C/D box 114-5 snoRNA SNORD114-5 small nucleolar RNA, C/D box 114-5 O - 20121230 -9606 767582 SNORD114-6 - 14q(II-6) HGNC:32994 14 14q32 small nucleolar RNA, C/D box 114-6 snoRNA SNORD114-6 small nucleolar RNA, C/D box 114-6 O - 20121230 -9606 767583 SNORD114-7 - 14q(II-7) HGNC:32995 14 14q32 small nucleolar RNA, C/D box 114-7 snoRNA SNORD114-7 small nucleolar RNA, C/D box 114-7 O - 20121230 -9606 767584 SNORD114-8 - 14q(II-8) HGNC:32996 14 14q32 small nucleolar RNA, C/D box 114-8 snoRNA SNORD114-8 small nucleolar RNA, C/D box 114-8 O - 20121230 -9606 767585 SNORD114-9 - 14q(II-9) HGNC:32997 14 14q32 small nucleolar RNA, C/D box 114-9 snoRNA SNORD114-9 small nucleolar RNA, C/D box 114-9 O - 20121230 -9606 767588 SNORD114-10 - 14q(II-10) HGNC:32998 14 14q32 small nucleolar RNA, C/D box 114-10 snoRNA SNORD114-10 small nucleolar RNA, C/D box 114-10 O - 20121230 -9606 767589 SNORD114-11 - 14q(II-11) HGNC:32999 14 14q32 small nucleolar RNA, C/D box 114-11 snoRNA SNORD114-11 small nucleolar RNA, C/D box 114-11 O - 20121230 -9606 767590 SNORD114-12 - 14q(II-12) HGNC:33000 14 14q32 small nucleolar RNA, C/D box 114-12 snoRNA SNORD114-12 small nucleolar RNA, C/D box 114-12 O - 20121230 -9606 767591 SNORD114-13 - 14q(II-13) HGNC:33001 14 14q32 small nucleolar RNA, C/D box 114-13 snoRNA SNORD114-13 small nucleolar RNA, C/D box 114-13 O - 20121230 -9606 767592 SNORD114-14 - 14q(II-14) HGNC:33002 14 14q32 small nucleolar RNA, C/D box 114-14 snoRNA SNORD114-14 small nucleolar RNA, C/D box 114-14 O - 20121230 -9606 767593 SNORD114-15 - 14q(II-15) HGNC:33003 14 14q32 small nucleolar RNA, C/D box 114-15 snoRNA SNORD114-15 small nucleolar RNA, C/D box 114-15 O - 20121230 -9606 767594 SNORD114-16 - 14q(II-16) HGNC:33004 14 14q32 small nucleolar RNA, C/D box 114-16 snoRNA SNORD114-16 small nucleolar RNA, C/D box 114-16 O - 20121230 -9606 767595 SNORD114-17 - 14q(II-17) HGNC:33005 14 14q32 small nucleolar RNA, C/D box 114-17 snoRNA SNORD114-17 small nucleolar RNA, C/D box 114-17 O - 20121230 -9606 767596 SNORD114-18 - 14q(II-18) HGNC:33006 14 14q32 small nucleolar RNA, C/D box 114-18 snoRNA SNORD114-18 small nucleolar RNA, C/D box 114-18 O - 20121230 -9606 767597 SNORD114-19 - 14q(II-19) HGNC:33007 14 14q32 small nucleolar RNA, C/D box 114-19 snoRNA SNORD114-19 small nucleolar RNA, C/D box 114-19 O - 20121230 -9606 767598 SNORD114-20 - 14q(II-20) HGNC:33008 14 14q32 small nucleolar RNA, C/D box 114-20 snoRNA SNORD114-20 small nucleolar RNA, C/D box 114-20 O - 20121230 -9606 767599 SNORD114-21 - 14q(II-21) HGNC:33009 14 14q32 small nucleolar RNA, C/D box 114-21 snoRNA SNORD114-21 small nucleolar RNA, C/D box 114-21 O - 20121230 -9606 767600 SNORD114-22 - 14q(II-22) HGNC:33010 14 14q32 small nucleolar RNA, C/D box 114-22 snoRNA SNORD114-22 small nucleolar RNA, C/D box 114-22 O - 20121230 -9606 767603 SNORD114-23 - 14q(II-23) HGNC:33011 14 14q32 small nucleolar RNA, C/D box 114-23 snoRNA SNORD114-23 small nucleolar RNA, C/D box 114-23 O - 20121230 -9606 767604 SNORD114-24 - 14q(II-24) HGNC:33012 14 14q32 small nucleolar RNA, C/D box 114-24 snoRNA SNORD114-24 small nucleolar RNA, C/D box 114-24 O - 20121230 -9606 767605 SNORD114-25 - 14q(II-25) HGNC:33013 14 14q32 small nucleolar RNA, C/D box 114-25 snoRNA SNORD114-25 small nucleolar RNA, C/D box 114-25 O - 20121230 -9606 767606 SNORD114-26 - 14q(II-26) HGNC:33014 14 14q32 small nucleolar RNA, C/D box 114-26 snoRNA SNORD114-26 small nucleolar RNA, C/D box 114-26 O - 20121230 -9606 767608 SNORD114-27 - 14q(II-27) HGNC:33015 14 14q32 small nucleolar RNA, C/D box 114-27 snoRNA SNORD114-27 small nucleolar RNA, C/D box 114-27 O - 20121230 -9606 767609 SNORD114-28 - 14q(II-28) HGNC:33016 14 14q32 small nucleolar RNA, C/D box 114-28 snoRNA SNORD114-28 small nucleolar RNA, C/D box 114-28 O - 20121230 -9606 767610 SNORD114-29 - 14q(II-29) HGNC:33017 14 14q32 small nucleolar RNA, C/D box 114-29 snoRNA SNORD114-29 small nucleolar RNA, C/D box 114-29 O - 20121230 -9606 767611 SNORD114-30 - 14q(II-30) HGNC:33018 14 14q32 small nucleolar RNA, C/D box 114-30 snoRNA SNORD114-30 small nucleolar RNA, C/D box 114-30 O - 20121230 -9606 767612 SNORD114-31 - 14q(II-31) HGNC:33019 14 14q32 small nucleolar RNA, C/D box 114-31 snoRNA SNORD114-31 small nucleolar RNA, C/D box 114-31 O - 20121230 -9606 767811 H2BFXP - - HGNC:25757 X Xq22.2 H2B histone family, member X, pseudogene pseudo H2BFXP H2B histone family, member X, pseudogene O - 20121230 -9606 767846 PFN1P2 - C1orf152|COAS3 HGNC:24298|MIM:608609 1 1q21 profilin 1 pseudogene 2 pseudo PFN1P2 profilin 1 pseudogene 2 O - 20121230 -9606 767850 PFN1P9 - - HGNC:42991 1 1p12 profilin 1 pseudogene 9 pseudo PFN1P9 profilin 1 pseudogene 9 O - 20121230 -9606 767851 PFN1P4 - - HGNC:42992 1 1q21.1 profilin 1 pseudogene 4 pseudo PFN1P4 profilin 1 pseudogene 4 O - 20121230 -9606 767852 PFN1P5 - - HGNC:42990 1 1q21.1 profilin 1 pseudogene 5 pseudo PFN1P5 profilin 1 pseudogene 5 O - 20121209 -9606 767853 PFN1P10 - - HGNC:42985 1 1p36.12 profilin 1 pseudogene 10 pseudo PFN1P10 profilin 1 pseudogene 10 O - 20121230 -9606 767854 PFN1P7 - - HGNC:42993 1 1q21.1 profilin 1 pseudogene 7 pseudo PFN1P7 profilin 1 pseudogene 7 O - 20121230 -9606 768086 LOC768086 - - - 11 11q23.3 trehalase (brush-border membrane glycoprotein) pseudogene pseudo - - - - 20121230 -9606 768096 HAR1A - HAR1F|LINC00064|NCRNA00064 HGNC:33117|MIM:610556 20 20q13.33 highly accelerated region 1A (non-protein coding) miscRNA HAR1A highly accelerated region 1A (non-protein coding) O - 20121230 -9606 768097 HAR1B - HAR1R|LINC00065|NCRNA00065 HGNC:33118|MIM:610557 20 20q13.33 highly accelerated region 1B (non-protein coding) miscRNA HAR1B highly accelerated region 1B (non-protein coding) O - 20121230 -9606 768206 PRCD - RP36 HGNC:32528|MIM:610598|Ensembl:ENSG00000214140|Vega:OTTHUMG00000132200 17 17q25.1 progressive rod-cone degeneration protein-coding PRCD progressive rod-cone degeneration O progressive rod-cone degeneration protein 20121230 -9606 768211 RELL1 PSEC0162 - HGNC:27379|MIM:611212|Ensembl:ENSG00000181826|Vega:OTTHUMG00000160389 4 4p14 RELT-like 1 protein-coding RELL1 RELT-like 1 O RELT-like protein 1|receptor expressed in lymphoid tissues like 1|tmp_locus_29 20121230 -9606 768212 MIR758 - MIRN758|hsa-mir-758 HGNC:33133|miRBase:MI0003757 14 14q32.31 microRNA 758 miscRNA MIR758 microRNA 758 O - 20121230 -9606 768213 MIR671 - MIRN671|hsa-mir-671 HGNC:33134|miRBase:MI0003760 7 7q36.1 microRNA 671 miscRNA MIR671 microRNA 671 O - 20121230 -9606 768214 MIR668 - MIRN668|hsa-mir-668 HGNC:33135|miRBase:MI0003761 14 14q32.31 microRNA 668 miscRNA MIR668 microRNA 668 O - 20121230 -9606 768215 MIR767 - MIRN767|hsa-mir-767 HGNC:33136|miRBase:MI0003763 X Xq28 microRNA 767 miscRNA MIR767 microRNA 767 O - 20121230 -9606 768216 MIR454 - MIRN454|hsa-mir-454 HGNC:33137|miRBase:MI0003820 17 17q22 microRNA 454 miscRNA MIR454 microRNA 454 O - 20121230 -9606 768217 MIR769 - MIRN769|hsa-mir-769 HGNC:33138|miRBase:MI0003834 19 19q13.32 microRNA 769 miscRNA MIR769 microRNA 769 O - 20121230 -9606 768218 MIR766 - MIRN766|hsa-mir-766 HGNC:33139|miRBase:MI0003836 X Xq24 microRNA 766 miscRNA MIR766 microRNA 766 O - 20121230 -9606 768219 MIR802 - MIRN802|hsa-mir-802 HGNC:33140|miRBase:MI0003906 21 21q22.12 microRNA 802 miscRNA MIR802 microRNA 802 O - 20121230 -9606 768220 MIR765 - MIRN765|hsa-mir-765 HGNC:33141|miRBase:MI0005116 1 1q23.1 microRNA 765 miscRNA MIR765 microRNA 765 O - 20121230 -9606 768222 MIR770 - MIRN770|hsa-mir-770 HGNC:33143|miRBase:MI0005118 14 14q32.2 microRNA 770 miscRNA MIR770 microRNA 770 O - 20121230 -9606 768239 PSAPL1 - - HGNC:33131|Ensembl:ENSG00000178597|Vega:OTTHUMG00000160006 4 4p16.1 prosaposin-like 1 (gene/pseudogene) protein-coding PSAPL1 prosaposin-like 1 (gene/pseudogene) O proactivator polypeptide-like 1|prosaposin-like protein 1 20121230 -9606 768328 EIF4EBP1P2 - - HGNC:44047 22 22q12 eukaryotic translation initiation factor 4E binding protein 1 pseudogene 2 pseudo EIF4EBP1P2 eukaryotic translation initiation factor 4E binding protein 1 pseudogene 2 O - 20121230 -9606 777642 RP34 - - HGNC:33161|MIM:300605 X Xq28 retinitis pigmentosa 34 (X-linked recessive) unknown RP34 retinitis pigmentosa 34 (X-linked recessive) O - 20120622 -9606 777643 GLC1M - - HGNC:33162|MIM:610535 5 5q glaucoma 1, open angle, M (juvenile-onset) unknown GLC1M glaucoma 1, open angle, M (juvenile-onset) O - 20120622 -9606 777645 GLC1N - - HGNC:33163|MIM:611274 15 15q22-q24 glaucoma 1, open angle, N (juvenile-onset) unknown GLC1N glaucoma 1, open angle, N (juvenile-onset) O - 20120318 -9606 777650 LOC777650 - - - 7 7q36.3 UBX domain protein 2B pseudogene pseudo - - - - 20121230 -9606 777774 ACTR3BP4 - - HGNC:38681 4 4q24 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 4 pseudo ACTR3BP4 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 4 O - 20121230 -9606 777778 OPA6 - ROA1 HGNC:33170|MIM:258500 8 8q21.13-q22.1 optic atrophy 6 (autosomal recessive) unknown OPA6 optic atrophy 6 (autosomal recessive) O - 20120622 -9606 780529 LOC780529 - - - 13 13q31 uncharacterized LOC780529 unknown - - - - 20120508 -9606 780776 TVP23A - FAM18A|YDR084C HGNC:20398|Ensembl:ENSG00000166676|Vega:OTTHUMG00000177389 16 16p13.13 trans-golgi network vesicle protein 23 homolog A (S. cerevisiae) protein-coding TVP23A trans-golgi network vesicle protein 23 homolog A (S. cerevisiae) O family with sequence similarity 18, member A|protein FAM18A 20121230 -9606 780778 USP10P2 - - HGNC:33272 14 14q11.1 ubiquitin specific peptidase10 pseudogene 2 pseudo USP10P2 ubiquitin specific peptidase10 pseudogene 2 O - 20121230 -9606 780779 USP10P1 - - HGNC:31752 14 14q11.2 ubiquitin specific peptidase 10 pseudogene 1 pseudo USP10P1 ubiquitin specific peptidase 10 pseudogene 1 O - 20121230 -9606 780780 LOC780780 - - - 22 22q11.1 ubiquitin specific peptidase 10 pseudogene pseudo - - - - 20121209 -9606 780789 C1orf196 - - HGNC:32336 1 1p36.21 chromosome 1 open reading frame 196 protein-coding C1orf196 chromosome 1 open reading frame 196 O - 20121216 -9606 780810 PAICSP3 - - HGNC:38096 6 6q13 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 3 pseudo PAICSP3 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 3 O - 20121230 -9606 780811 PAICSP5 - - HGNC:38098 7 7q35 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 5 pseudo PAICSP5 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 5 O - 20121230 -9606 780812 PAICSP6 - - HGNC:38099 7 7q35 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 pseudo PAICSP6 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 O - 20121230 -9606 780813 PAICSP4 - - HGNC:38097 8 8p23.2 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4 pseudo PAICSP4 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4 O - 20121230 -9606 780814 PAICSP1 - - HGNC:8588 9 9p13 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 1 pseudo PAICSP1 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 1 O - 20121230 -9606 780815 PAICSP2 - - HGNC:8589 9 9q22 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 2 pseudo PAICSP2 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 2 O - 20121230 -9606 780816 PAICSP7 - - HGNC:38100 X Xq21 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 pseudo PAICSP7 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 O - 20121230 -9606 780851 SNORD3A - RNU3|U3 HGNC:33189|MIM:180710 17 17p11.2 small nucleolar RNA, C/D box 3A snoRNA SNORD3A small nucleolar RNA, C/D box 3A O - 20121230 -9606 780852 SNORD3B-2 - U3-2B|U3b2 HGNC:33190 17 17p11.2 small nucleolar RNA, C/D box 3B-2 snoRNA SNORD3B-2 small nucleolar RNA, C/D box 3B-2 O - 20121230 -9606 780853 SNORD3C - U3-3 HGNC:33191 17 17p11.2 small nucleolar RNA, C/D box 3C snoRNA SNORD3C small nucleolar RNA, C/D box 3C O - 20121209 -9606 780854 SNORD3D - U3-4 HGNC:33192 17 17p11.2 small nucleolar RNA, C/D box 3D snoRNA SNORD3D small nucleolar RNA, C/D box 3D O - 20121230 -9606 780895 DUPC1 - - MIM:126900 16 16q11.1-q22 Dupuytren contracture 1 unknown - - - - 20120622 -9606 780896 ACTD - - MIM:142700 13 13q22 Acetabular dysplasia unknown - - - - 20120622 -9606 780897 HPP1 - FPH1|HPP|MUH HGNC:37055|MIM:145250 19 19pter-p13.1 hyperpigmentation, progressive, 1 unknown HPP1 hyperpigmentation, progressive, 1 O - 20120622 -9606 780898 AMRS - - MIM:203650 3 3q26.3-q27.3 Alopecia-mental retardation syndrome unknown - - - - 20120622 -9606 780899 DIH2 - - MIM:222400 8 8p23.1 Hernia, congenital diaphragmatic 2 unknown - - - - 20120622 -9606 780900 FGS5 - - HGNC:37735|MIM:300581 X Xq22.3 FG syndrome 5 unknown FGS5 FG syndrome 5 O - 20120622 -9606 780901 NYS5 - - MIM:300589 X - Nystagmus 5, infantile periodic alternating unknown - - - - 20120622 -9606 780903 ORW3 - HHT3 MIM:601101 5 5q31.3-q32 Osler-Rendu-Weber syndrome 3 unknown - - - - 20120622 -9606 780904 PSS - - MIM:601224 11 11p11.2 Potocki-Shaffer syndrome unknown - - - - 20120622 -9606 780905 EA3 - - MIM:606554 1 1q42 Episodic ataxia, type 3 unknown - - - - 20120622 -9606 780906 SLI3 - - MIM:607134 13 13q21 Specific language impairment QTL, 3 unknown - - - - 20120622 -9606 780908 PEE2 - - MIM:609402 2 2p25 Preeclampsia/eclampsia 2 unknown - - - - 20120622 -9606 780909 PEE3 - - MIM:609403 9 9p13 Preeclampsia/eclampsia 3 unknown - - - - 20120622 -9606 780910 PPR2 - - MIM:609572 13 13q31.3 Photoparoxysmal response 2 unknown - - - - 20120622 -9606 780911 TQDS - C10q26DEL MIM:609625 10 10q Chromosome 10q deletion syndrome unknown - - - - 20120622 -9606 780912 AD10 - - MIM:609636 7 7q36 Alzheimer disease-10 unknown - - - - 20120622 -9606 780913 EIG4 - - MIM:609750 10 10q25-q26 Epilepsy, idiopathic generalized, susceptibility to 4 unknown - - - - 20120622 -9606 780914 ZD1 - - MIM:609815 3 3p21.31 Zygodactyly 1 unknown - - - - 20120622 -9606 780915 CHNG3 - RTSH MIM:609893 15 15q25.3-q26.1 Hypothyroidism, congenital, nongoitrous, 3 unknown - - - - 20120622 -9606 780916 GINGF3 - GGF3|HGF3 MIM:609955 2 2p23.3-p22.3 Fibromatosis, gingival, 3 unknown - - - - 20120622 -9606 780917 NKCD - - MIM:609981 - - Natural killer cell deficiency, familial isolated unknown - - - - 20121201 -9606 780919 HRPT3 - - MIM:610071 2 2p14-p13.3 Hyperparathyroidism 3 unknown - - - - 20120622 -9606 780920 MPD3 - - MIM:610099 8 8p22-q11 Myopathy, distal 3 unknown - - - - 20120622 -9606 780921 KYPSC1 - - MIM:610170 5 5p13 Kyphoscoliosis 1 unknown - - - - 20120622 -9606 780922 SPD3 - - MIM:610234 14 14q11.2-q12 Synpolydactyly 3 unknown - - - - 20120622 -9606 780923 IHPS2 - - MIM:610260 16 16p13-p12 Pyloric stenosis, infantile hypertrophic, 2 unknown - - - - 20120622 -9606 780925 CHMRQ - - MIM:610185 17 17p Cerebellar hypoplasia, mental retardation, and quadrupedal locomotion unknown - - - - 20120622 -9606 790951 TRNAS4 - TRS4 HGNC:33201 6 6p22.1 transfer RNA serine 4 (anticodon AGA) tRNA TRNAS4 transfer RNA serine 4 (anticodon AGA) O - 20121230 -9606 790952 ESRG - HESRG HGNC:39079|MIM:611473 3 3p14.3|3p14.3 embryonic stem cell related (non-protein coding) miscRNA ESRG embryonic stem cell related (non-protein coding) O - 20121230 -9606 790953 TSL - - - 7 7p15.2 testis-expressed, seven-twelve, leukemia unknown - - - - 20120508 -9606 790955 C11orf83 UNQ655/PRO1286 CCDS41658.1|UNQ655 HGNC:34399|Ensembl:ENSG00000204922 11 11q12.3 chromosome 11 open reading frame 83 protein-coding C11orf83 chromosome 11 open reading frame 83 O UPF0723 protein C11orf83|VEGA:LOC790955 20121230 -9606 790966 TRNAK2 - TRK2 HGNC:33199|MIM:612996 5 5q35.3 transfer RNA lysine 2 (anticodon CUU) tRNA TRNAK2 transfer RNA lysine 2 (anticodon CUU) O - 20121230 -9606 790969 ZNF705F - - HGNC:33204 8 8p23.1 zinc finger protein 705F protein-coding ZNF705F zinc finger protein 705F O - 20121211 -9606 791082 DBIP3 - - HGNC:38517 16 16p13.3 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 3 pseudo DBIP3 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 3 O - 20121230 -9606 791085 DEL17Q21.31 - C17DELq21.31 MIM:610443 - - Microdeletion 17q21.31 syndrome unknown - - - - 20120622 -9606 791086 CTPP5 - - MIM:610634 14 14q22-q23 Cataract, posterior polar, 5 unknown - - - - 20120622 -9606 791087 HHT4 - - MIM:610655 7 7p14 Telangiectasia, hereditary hemorrhagic, type 4 unknown - - - - 20120622 -9606 791091 LOC791091 - - - X Xp11.2 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791092 LOC791092 - - - X Xp11.23 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791093 LOC791093 - - - X Xp11.23 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791094 LOC791094 - - - X Xp11.23 ornithine aminotransferase pseudogene pseudo - - - - 20121102 -9606 791095 LOC791095 - - - X Xp11.23 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791096 LOC791096 - - - X Xp11.2 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791097 LOC791097 - - - X Xp11.23 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791098 LOC791098 - - - X Xp11.23-p11.22 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791099 LOC791099 - - - X Xp11.22 ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 791114 PWRN1 - NCRNA00198 HGNC:33235|MIM:611215 15 15q11.2 Prader-Willi region non-protein coding RNA 1 miscRNA PWRN1 Prader-Willi region non-protein coding RNA 1 O - 20121230 -9606 791115 PWRN2 - NCRNA00199 HGNC:33236|MIM:611217 15 15q11.2 Prader-Willi region non-protein coding RNA 2 miscRNA PWRN2 Prader-Willi region non-protein coding RNA 2 O - 20121230 -9606 791121 SHFL1 - SHFLD MIM:119100 1 1q42.2-q43 Split-hand/foot malformation with long bone deficiency 1 unknown - - - - 20120622 -9606 791122 KTWS - KTS MIM:149000 8 8q22.3 Klippel-Trenaunay-Weber syndrome unknown - - - - 20120622 -9606 791123 SHFLD2 - - MIM:610685 6 6q14.1 Split-hand/foot malformation with long deficiency 2 unknown - - - - 20120622 -9606 791126 LOC791126 - - - 18 18q12.2 WDR45-like pseudogene pseudo - - - - 20121230 -9606 791226 TRNAN2 - TRN2 HGNC:33197 1 1p36.13 transfer RNA asparagine 2 (anticodon GUU) tRNA TRNAN2 transfer RNA asparagine 2 (anticodon GUU) O - 20121230 -9606 791227 TRNAN3 - TRN3 HGNC:33198 1 1q21.1 transfer RNA asparagine 3 (anticodon GUU) tRNA TRNAN3 transfer RNA asparagine 3 (anticodon GUU) O - 20121230 -9606 791228 SPG36 - - HGNC:33240|MIM:613096 12 12q23-q24 spastic paraplegia 36 (autosomal dominant) unknown SPG36 spastic paraplegia 36 (autosomal dominant) O - 20120622 -9606 791229 MACOM - - HGNC:33244|MIM:602499 2 2p23-p16 macrophthalmia, colobomatous, with microcornea unknown MACOM macrophthalmia, colobomatous, with microcornea O - 20120318 -9606 791230 TRNAV7 - HtV1|TRV7 HGNC:33246 6 6p22.1 transfer RNA valine 7 (anticodon AAC) tRNA TRNAV7 transfer RNA valine 7 (anticodon AAC) O - 20121230 -9606 791231 TRNAV8 - HtV2|TRV8 HGNC:33247 6 6p22.1 transfer RNA valine 8 (anticodon AAC) tRNA TRNAV8 transfer RNA valine 8 (anticodon AAC) O - 20121230 -9606 791232 TRNAV9 - HtV3|TRV9 HGNC:33248 5 5q35.3 transfer RNA valine 9 (anticodon CAC) tRNA TRNAV9 transfer RNA valine 9 (anticodon CAC) O - 20121209 -9606 791254 EDS8 - - MIM:130080 12 12p13 Ehlers-Danlos syndrome, type VIII unknown - - - - 20120622 -9606 791255 SPDA2 - - MIM:183840 9 9q31-q34 Spondyloarthropathy, susceptibility to, 2 unknown - - - - 20120622 -9606 100008586 GAGE12F - - HGNC:31906|MIM:300730|Ensembl:ENSG00000236362|Vega:OTTHUMG00000024147 X Xp11.23 G antigen 12F protein-coding GAGE12F G antigen 12F O GAGE-12F|g antigen 12F/G/I 20121209 -9606 100008587 RNA5-8S5 - RN5-8S1 HGNC:37660 22 22p12 RNA, 5.8S ribosomal 5 rRNA RNA5-8S5 RNA, 5.8S ribosomal 5 O - 20121209 -9606 100008588 RNA18S5 - RN18S1 HGNC:37657 22 22p12 RNA, 18S ribosomal 5 rRNA RNA18S5 RNA, 18S ribosomal 5 O - 20121230 -9606 100008589 RNA28S5 - RN28S1 HGNC:37659 22 22p12 RNA, 28S ribosomal 5 rRNA RNA28S5 RNA, 28S ribosomal 5 O - 20121230 -9606 100009601 TRNAY1 - Tyr-tRNA HGNC:33249 14 14q11.2 transfer RNA tyrosine 1 (anticodon GUA) tRNA TRNAY1 transfer RNA tyrosine 1 (anticodon GUA) O - 20121230 -9606 100009602 TRNAY2 - Tyr-tRNA HGNC:33250 14 14q11.2 transfer RNA tyrosine 2 (anticodon GUA) tRNA TRNAY2 transfer RNA tyrosine 2 (anticodon GUA) O - 20121230 -9606 100009603 TRNAA2 - - HGNC:33253 6 6p22.1 transfer RNA alanine 2 (anticodon AGC) tRNA TRNAA2 transfer RNA alanine 2 (anticodon AGC) O - 20121230 -9606 100009604 TRNAA3 - - HGNC:33254 2 2p23.3 transfer RNA alanine 3 (anticodon AGC) tRNA TRNAA3 transfer RNA alanine 3 (anticodon AGC) O - 20121230 -9606 100009605 TRNAF1 - - HGNC:33255 11 11q12.1 transfer RNA phenylalanine 1 (anticodon GAA) tRNA TRNAF1 transfer RNA phenylalanine 1 (anticodon GAA) O - 20121230 -9606 100009606 TRNAF2 - - HGNC:33259 12 12q24.31 transfer RNA phenylalanine 2 (anticodon GAA) tRNA TRNAF2 transfer RNA phenylalanine 2 (anticodon GAA) O - 20121230 -9606 100009607 TRNAH5 - - HGNC:33260 9 - transfer RNA histidine 5 (anticodon GUG) tRNA TRNAH5 transfer RNA histidine 5 (anticodon GUG) O - 20121230 -9606 100009613 ANO1-AS2 - C11orf78|NCRNA00224 HGNC:33275 11 11q13.3 ANO1 antisense RNA 2 (head to head) miscRNA ANO1-AS2 ANO1 antisense RNA 2 (head to head) O - 20121230 -9606 100009665 POU5F1P2 - - HGNC:33309 8 8q22.2 POU class 5 homeobox 1 pseudogene 2 pseudo POU5F1P2 POU class 5 homeobox 1 pseudogene 2 O - 20121230 -9606 100009667 POU5F1P5 RP11-474D14.3 - HGNC:33311 10 10q21.3 POU class 5 homeobox 1 pseudogene 5 pseudo POU5F1P5 POU class 5 homeobox 1 pseudogene 5 O - 20121230 -9606 100009668 POU5F1P6 - - HGNC:33312 3 3q21.3 POU class 5 homeobox 1 pseudogene 6 pseudo POU5F1P6 POU class 5 homeobox 1 pseudogene 6 O - 20121230 -9606 100009669 POU5F1P7 - - HGNC:33313 3 3q12.1 POU class 5 homeobox 1 pseudogene 7 pseudo POU5F1P7 POU class 5 homeobox 1 pseudogene 7 O - 20121230 -9606 100009670 POU5F1P8 - - HGNC:33314 17 17q25.3 POU class 5 homeobox 1 pseudogene 8 pseudo POU5F1P8 POU class 5 homeobox 1 pseudogene 8 O - 20120318 -9606 100009675 MRT4 - - HGNC:33243|MIM:611107 1 1p21.3-p13.3 mental retardation, non-syndromic, autosomal recessive, 4 unknown MRT4 mental retardation, non-syndromic, autosomal recessive, 4 O - 20120622 -9606 100009676 LOC100009676 - - - 3 3q12.3 uncharacterized LOC100009676 miscRNA - - - - 20121230 -9606 100033391 VN2R2P - - HGNC:33208 5 5q35.3 vomeronasal 2 receptor 2 pseudogene pseudo VN2R2P vomeronasal 2 receptor 2 pseudogene O - 20121230 -9606 100033392 VN2R3P - - HGNC:33209 9 9p13.1 vomeronasal 2 receptor 3 pseudogene pseudo VN2R3P vomeronasal 2 receptor 3 pseudogene O - 20121230 -9606 100033393 VN2R4P - - HGNC:33210 9 9p13.1 vomeronasal 2 receptor 4 pseudogene pseudo VN2R4P vomeronasal 2 receptor 4 pseudogene O - 20121209 -9606 100033394 VN2R5P - VN2R8P HGNC:33211 9 9p12 vomeronasal 2 receptor 5 pseudogene pseudo VN2R5P vomeronasal 2 receptor 5 pseudogene O - 20121209 -9606 100033395 VN2R6P - - HGNC:33212 9 9p11.1 vomeronasal 2 receptor 6 pseudogene pseudo VN2R6P vomeronasal 2 receptor 6 pseudogene O - 20121209 -9606 100033396 VN2R7P - - HGNC:33213 9 9q12 vomeronasal 2 receptor 7 pseudogene pseudo VN2R7P vomeronasal 2 receptor 7 pseudogene O - 20121209 -9606 100033398 VN2R10P - - HGNC:33216 16 16q23.1 vomeronasal 2 receptor 10 pseudogene pseudo VN2R10P vomeronasal 2 receptor 10 pseudogene O - 20121230 -9606 100033399 VN2R11P - - HGNC:33217 19 19p13.3 vomeronasal 2 receptor 11 pseudogene pseudo VN2R11P vomeronasal 2 receptor 11 pseudogene O - 20121230 -9606 100033400 VN2R12P - - HGNC:33218 19 19p13.2 vomeronasal 2 receptor 12 pseudogene pseudo VN2R12P vomeronasal 2 receptor 12 pseudogene O - 20121230 -9606 100033401 VN2R13P - - HGNC:33219 19 19p13.2 vomeronasal 2 receptor 13 pseudogene pseudo VN2R13P vomeronasal 2 receptor 13 pseudogene O - 20121230 -9606 100033402 VN2R14P - - HGNC:33220 19 19p13.2 vomeronasal 2 receptor 14 pseudogene pseudo VN2R14P vomeronasal 2 receptor 14 pseudogene O - 20121230 -9606 100033403 VN2R15P - - HGNC:33221 19 19p13.2 vomeronasal 2 receptor 15 pseudogene pseudo VN2R15P vomeronasal 2 receptor 15 pseudogene O - 20121230 -9606 100033404 VN2R16P - - HGNC:33222 19 19p13.2 vomeronasal 2 receptor 16 pseudogene pseudo VN2R16P vomeronasal 2 receptor 16 pseudogene O - 20121230 -9606 100033406 VN2R18P - - HGNC:33224 19 19q13.43 vomeronasal 2 receptor 18 pseudogene pseudo VN2R18P vomeronasal 2 receptor 18 pseudogene O - 20121230 -9606 100033407 VN2R19P - - HGNC:33225 19 19q13.43 vomeronasal 2 receptor 19 pseudogene pseudo VN2R19P vomeronasal 2 receptor 19 pseudogene O - 20121230 -9606 100033408 VN2R20P - - HGNC:33226 21 21q21.2 vomeronasal 2 receptor 20 pseudogene pseudo VN2R20P vomeronasal 2 receptor 20 pseudogene O - 20121230 -9606 100033409 OTX2P1 - OTX2P HGNC:33281 9 9q21 orthodenticle homeobox 2 pseudogene 1 pseudo OTX2P1 orthodenticle homeobox 2 pseudogene 1 O - 20121230 -9606 100033410 SATB1P1 - - HGNC:33344 6 6q22.31 SATB homeobox 1 pseudogene 1 pseudo SATB1P1 SATB homeobox 1 pseudogene 1 O - 20120318 -9606 100033411 DUXB - - HGNC:33345 16 16q23.1 double homeobox B protein-coding DUXB double homeobox B O - 20120318 -9606 100033413 SNORD116-1 - HBII-85-1|PWCR1 HGNC:33067|MIM:605436 15 15q11.2 small nucleolar RNA, C/D box 116-1 snoRNA SNORD116-1 small nucleolar RNA, C/D box 116-1 O - 20121230 -9606 100033414 SNORD116-2 - HBII-85-2 HGNC:33068 15 15q11.2 small nucleolar RNA, C/D box 116-2 snoRNA SNORD116-2 small nucleolar RNA, C/D box 116-2 O - 20121230 -9606 100033415 SNORD116-3 - HBII-85-3 HGNC:33069 15 15q11.2 small nucleolar RNA, C/D box 116-3 snoRNA SNORD116-3 small nucleolar RNA, C/D box 116-3 O - 20121230 -9606 100033416 SNORD116-4 - HBII-85-4 HGNC:33070 15 15q11.2 small nucleolar RNA, C/D box 116-4 snoRNA SNORD116-4 small nucleolar RNA, C/D box 116-4 O - 20121230 -9606 100033417 SNORD116-5 - HBII-85-5 HGNC:33071 15 15q11.2 small nucleolar RNA, C/D box 116-5 snoRNA SNORD116-5 small nucleolar RNA, C/D box 116-5 O - 20121230 -9606 100033418 SNORD116-6 - HBII-85-6 HGNC:33072 15 15q11.2 small nucleolar RNA, C/D box 116-6 snoRNA SNORD116-6 small nucleolar RNA, C/D box 116-6 O - 20121230 -9606 100033419 SNORD116-7 - HBII-85-7 HGNC:33073 15 15q11.2 small nucleolar RNA, C/D box 116-7 snoRNA SNORD116-7 small nucleolar RNA, C/D box 116-7 O - 20121230 -9606 100033420 SNORD116-8 - HBII-85-8 HGNC:33074 15 15q11.2 small nucleolar RNA, C/D box 116-8 snoRNA SNORD116-8 small nucleolar RNA, C/D box 116-8 O - 20121230 -9606 100033421 SNORD116-9 - HBII-85-9 HGNC:33075 15 15q11.2 small nucleolar RNA, C/D box 116-9 snoRNA SNORD116-9 small nucleolar RNA, C/D box 116-9 O - 20121230 -9606 100033422 SNORD116-10 - HBII-85-10 HGNC:33076 15 15q11.2 small nucleolar RNA, C/D box 116-10 snoRNA SNORD116-10 small nucleolar RNA, C/D box 116-10 O - 20121230 -9606 100033423 SNORD116-11 - HBII-85-11 HGNC:33077 15 15q11.2 small nucleolar RNA, C/D box 116-11 snoRNA SNORD116-11 small nucleolar RNA, C/D box 116-11 O - 20121230 -9606 100033424 SNORD116-12 - HBII-85-12 HGNC:33078 15 15q11.2 small nucleolar RNA, C/D box 116-12 snoRNA SNORD116-12 small nucleolar RNA, C/D box 116-12 O - 20121230 -9606 100033425 SNORD116-13 - HBII-85-13 HGNC:33079 15 15q11.2 small nucleolar RNA, C/D box 116-13 snoRNA SNORD116-13 small nucleolar RNA, C/D box 116-13 O - 20121230 -9606 100033426 SNORD116-14 - HBII-85-14 HGNC:33080 15 15q11.2 small nucleolar RNA, C/D box 116-14 snoRNA SNORD116-14 small nucleolar RNA, C/D box 116-14 O - 20121230 -9606 100033427 SNORD116-15 - HBII-85-15 HGNC:33081 15 15q11.2 small nucleolar RNA, C/D box 116-15 snoRNA SNORD116-15 small nucleolar RNA, C/D box 116-15 O - 20121230 -9606 100033428 SNORD116-16 - HBII-85-16 HGNC:33082 15 15q11.2 small nucleolar RNA, C/D box 116-16 snoRNA SNORD116-16 small nucleolar RNA, C/D box 116-16 O - 20121230 -9606 100033429 SNORD116-17 - HBII-85-17 HGNC:33083 15 15q11.2 small nucleolar RNA, C/D box 116-17 snoRNA SNORD116-17 small nucleolar RNA, C/D box 116-17 O - 20121230 -9606 100033430 SNORD116-18 - HBII-85-18 HGNC:33084 15 15q11.2 small nucleolar RNA, C/D box 116-18 snoRNA SNORD116-18 small nucleolar RNA, C/D box 116-18 O - 20121230 -9606 100033431 SNORD116-20 - HBII-85-20 HGNC:33086 15 15q11.2 small nucleolar RNA, C/D box 116-20 snoRNA SNORD116-20 small nucleolar RNA, C/D box 116-20 O - 20121230 -9606 100033432 SNORD116-21 - HBII-85-21 HGNC:33087 15 15q11.2 small nucleolar RNA, C/D box 116-21 snoRNA SNORD116-21 small nucleolar RNA, C/D box 116-21 O - 20121230 -9606 100033433 SNORD116-22 - HBII-85-22 HGNC:33088 15 15q11.2 small nucleolar RNA, C/D box 116-22 snoRNA SNORD116-22 small nucleolar RNA, C/D box 116-22 O - 20121230 -9606 100033434 SNORD116-23 - HBII-85-23 HGNC:33089 15 15q11.2 small nucleolar RNA, C/D box 116-23 snoRNA SNORD116-23 small nucleolar RNA, C/D box 116-23 O - 20121230 -9606 100033435 SNORD116-24 - HBII-85-24 HGNC:33090 15 15q11.2 small nucleolar RNA, C/D box 116-24 snoRNA SNORD116-24 small nucleolar RNA, C/D box 116-24 O - 20121230 -9606 100033436 SNORD116-25 - HBII-85-25 HGNC:33091 15 15q11.2 small nucleolar RNA, C/D box 116-25 snoRNA SNORD116-25 small nucleolar RNA, C/D box 116-25 O - 20121230 -9606 100033437 SNORD115-2 - HBII-52-2 HGNC:33021 15 15q11.2 small nucleolar RNA, C/D box 115-2 snoRNA SNORD115-2 small nucleolar RNA, C/D box 115-2 O - 20121230 -9606 100033438 SNORD116-26 - HBII-85-26 HGNC:33092 15 15q11.2 small nucleolar RNA, C/D box 116-26 snoRNA SNORD116-26 small nucleolar RNA, C/D box 116-26 O - 20121230 -9606 100033439 SNORD116-27 - HBII-85-27 HGNC:33093 15 15q11.2 small nucleolar RNA, C/D box 116-27 snoRNA SNORD116-27 small nucleolar RNA, C/D box 116-27 O - 20121230 -9606 100033440 SNORD115-3 - HBII-52-3 HGNC:33022 15 15q11.2 small nucleolar RNA, C/D box 115-3 snoRNA SNORD115-3 small nucleolar RNA, C/D box 115-3 O - 20121230 -9606 100033441 SNORD115-4 - HBII-52-4 HGNC:33023 15 15q11.2 small nucleolar RNA, C/D box 115-4 snoRNA SNORD115-4 small nucleolar RNA, C/D box 115-4 O - 20121230 -9606 100033442 SNORD115-5 - HBII-52-5 HGNC:33024 15 15q11.2 small nucleolar RNA, C/D box 115-5 snoRNA SNORD115-5 small nucleolar RNA, C/D box 115-5 O - 20121230 -9606 100033443 SNORD115-6 - HBII-52-6 HGNC:33025 15 15q11.2 small nucleolar RNA, C/D box 115-6 snoRNA SNORD115-6 small nucleolar RNA, C/D box 115-6 O - 20121230 -9606 100033444 SNORD115-7 - HBII-52-7 HGNC:33026 15 15q11.2 small nucleolar RNA, C/D box 115-7 snoRNA SNORD115-7 small nucleolar RNA, C/D box 115-7 O - 20121230 -9606 100033445 SNORD115-8 - HBII-52-8 HGNC:33027 15 15q11.2 small nucleolar RNA, C/D box 115-8 snoRNA SNORD115-8 small nucleolar RNA, C/D box 115-8 O - 20121230 -9606 100033446 SNORD115-9 - HBII-52-9 HGNC:33028 15 15q11.2 small nucleolar RNA, C/D box 115-9 snoRNA SNORD115-9 small nucleolar RNA, C/D box 115-9 O - 20121230 -9606 100033447 SNORD115-10 - HBII-52-10 HGNC:33029 15 15q11.2 small nucleolar RNA, C/D box 115-10 snoRNA SNORD115-10 small nucleolar RNA, C/D box 115-10 O - 20121230 -9606 100033448 SNORD115-11 - HBII-52-11 HGNC:33030 15 15q11.2 small nucleolar RNA, C/D box 115-11 snoRNA SNORD115-11 small nucleolar RNA, C/D box 115-11 O - 20121230 -9606 100033449 SNORD115-12 - HBII-52-12 HGNC:33031 15 15q11.2 small nucleolar RNA, C/D box 115-12 snoRNA SNORD115-12 small nucleolar RNA, C/D box 115-12 O - 20121230 -9606 100033450 SNORD115-13 - HBII-52-13 HGNC:33032 15 15q11.2 small nucleolar RNA, C/D box 115-13 snoRNA SNORD115-13 small nucleolar RNA, C/D box 115-13 O - 20121230 -9606 100033451 SNORD115-14 - HBII-52-14 HGNC:33033 15 15q11.2 small nucleolar RNA, C/D box 115-14 snoRNA SNORD115-14 small nucleolar RNA, C/D box 115-14 O - 20121230 -9606 100033453 SNORD115-15 - HBII-52-15 HGNC:33034 15 15q11.2 small nucleolar RNA, C/D box 115-15 snoRNA SNORD115-15 small nucleolar RNA, C/D box 115-15 O - 20121230 -9606 100033454 SNORD115-16 - HBII-52-16 HGNC:33035 15 15q11.2 small nucleolar RNA, C/D box 115-16 snoRNA SNORD115-16 small nucleolar RNA, C/D box 115-16 O - 20121230 -9606 100033455 SNORD115-17 - HBII-52-17 HGNC:33036 15 15q11.2 small nucleolar RNA, C/D box 115-17 snoRNA SNORD115-17 small nucleolar RNA, C/D box 115-17 O - 20121230 -9606 100033456 SNORD115-18 - HBII-52-18 HGNC:33037 15 15q11.2 small nucleolar RNA, C/D box 115-18 snoRNA SNORD115-18 small nucleolar RNA, C/D box 115-18 O - 20121230 -9606 100033458 SNORD115-19 - HBII-52-19 HGNC:33038 15 15q11.2 small nucleolar RNA, C/D box 115-19 snoRNA SNORD115-19 small nucleolar RNA, C/D box 115-19 O - 20121230 -9606 100033460 SNORD115-20 - HBII-52-20 HGNC:33039 15 15q11.2 small nucleolar RNA, C/D box 115-20 snoRNA SNORD115-20 small nucleolar RNA, C/D box 115-20 O - 20121230 -9606 100033603 SNORD115-21 - HBII-52-21 HGNC:33040 15 15q11.2 small nucleolar RNA, C/D box 115-21 snoRNA SNORD115-21 small nucleolar RNA, C/D box 115-21 O - 20121230 -9606 100033799 SNORD115-22 - HBII-52-22 HGNC:33041 15 15q11.2 small nucleolar RNA, C/D box 115-22 snoRNA SNORD115-22 small nucleolar RNA, C/D box 115-22 O - 20121230 -9606 100033800 SNORD115-23 - HBII-52-23 HGNC:33042 15 15q11.2 small nucleolar RNA, C/D box 115-23 snoRNA SNORD115-23 small nucleolar RNA, C/D box 115-23 O - 20121230 -9606 100033801 SNORD115-25 - HBII-52-25 HGNC:33044 15 15q11.2 small nucleolar RNA, C/D box 115-25 snoRNA SNORD115-25 small nucleolar RNA, C/D box 115-25 O - 20121230 -9606 100033802 SNORD115-26 - HBII-52-26 HGNC:33045 15 15q11.2 small nucleolar RNA, C/D box 115-26 snoRNA SNORD115-26 small nucleolar RNA, C/D box 115-26 O - 20121230 -9606 100033803 SNORD115-29 - HBII-52-29 HGNC:33048 15 15q11.2 small nucleolar RNA, C/D box 115-29 snoRNA SNORD115-29 small nucleolar RNA, C/D box 115-29 O - 20121230 -9606 100033804 SNORD115-30 - HBII-52-30 HGNC:33049 15 15q11.2 small nucleolar RNA, C/D box 115-30 snoRNA SNORD115-30 small nucleolar RNA, C/D box 115-30 O - 20121230 -9606 100033805 SNORD115-31 - HBII-52-31 HGNC:33050 15 15q11.2 small nucleolar RNA, C/D box 115-31 snoRNA SNORD115-31 small nucleolar RNA, C/D box 115-31 O - 20121230 -9606 100033806 SNORD115-32 - HBII-52-32 HGNC:33051 15 15q11.2 small nucleolar RNA, C/D box 115-32 snoRNA SNORD115-32 small nucleolar RNA, C/D box 115-32 O - 20121230 -9606 100033807 SNORD115-33 - HBII-52-33 HGNC:33052 15 15q11.2 small nucleolar RNA, C/D box 115-33 snoRNA SNORD115-33 small nucleolar RNA, C/D box 115-33 O - 20121230 -9606 100033808 SNORD115-34 - HBII-52-34 HGNC:33053 15 15q11.2 small nucleolar RNA, C/D box 115-34 snoRNA SNORD115-34 small nucleolar RNA, C/D box 115-34 O - 20121230 -9606 100033809 SNORD115-35 - HBII-52-35 HGNC:33054 15 15q11.2 small nucleolar RNA, C/D box 115-35 snoRNA SNORD115-35 small nucleolar RNA, C/D box 115-35 O - 20121230 -9606 100033810 SNORD115-36 - HBII-52-36 HGNC:33055 15 15q11.2 small nucleolar RNA, C/D box 115-36 snoRNA SNORD115-36 small nucleolar RNA, C/D box 115-36 O - 20121230 -9606 100033811 SNORD115-37 - HBII-52-37 HGNC:33056 15 15q11.2 small nucleolar RNA, C/D box 115-37 snoRNA SNORD115-37 small nucleolar RNA, C/D box 115-37 O - 20121230 -9606 100033812 SNORD115-38 - HBII-52-38 HGNC:33057 15 15q11.2 small nucleolar RNA, C/D box 115-38 snoRNA SNORD115-38 small nucleolar RNA, C/D box 115-38 O - 20121230 -9606 100033813 SNORD115-39 - HBII-52-39 HGNC:33058 15 15q11.2 small nucleolar RNA, C/D box 115-39 snoRNA SNORD115-39 small nucleolar RNA, C/D box 115-39 O - 20121230 -9606 100033814 SNORD115-40 - HBII-52-40 HGNC:33059 15 15q11.2 small nucleolar RNA, C/D box 115-40 snoRNA SNORD115-40 small nucleolar RNA, C/D box 115-40 O - 20121230 -9606 100033815 SNORD115-41 - HBII-52-41 HGNC:33060 15 15q11.2 small nucleolar RNA, C/D box 115-41 snoRNA SNORD115-41 small nucleolar RNA, C/D box 115-41 O - 20121230 -9606 100033816 SNORD115-42 - HBII-52-42 HGNC:33061 15 15q11.2 small nucleolar RNA, C/D box 115-42 snoRNA SNORD115-42 small nucleolar RNA, C/D box 115-42 O - 20121230 -9606 100033817 SNORD115-43 - HBII-52-43 HGNC:33062 15 15q11.2 small nucleolar RNA, C/D box 115-43 snoRNA SNORD115-43 small nucleolar RNA, C/D box 115-43 O - 20121230 -9606 100033818 SNORD115-44 - HBII-52-44 HGNC:33063 15 15q11.2 small nucleolar RNA, C/D box 115-44 snoRNA SNORD115-44 small nucleolar RNA, C/D box 115-44 O - 20121230 -9606 100033819 MIR675 - MIRN675|hsa-mir-675 HGNC:33351|miRBase:MI0005416 11 11p15.5 microRNA 675 miscRNA MIR675 microRNA 675 O - 20121230 -9606 100033820 SNORD116-28 - HBII-85-28 HGNC:33347 15 15q11.2 small nucleolar RNA, C/D box 116-28 snoRNA SNORD116-28 small nucleolar RNA, C/D box 116-28 O - 20121230 -9606 100033821 SNORD116-29 - HBII-85-29 HGNC:33348 15 15q11.2 small nucleolar RNA, C/D box 116-29 snoRNA SNORD116-29 small nucleolar RNA, C/D box 116-29 O - 20121230 -9606 100033822 SNORD115-48 - HBII-52-48 HGNC:33343 15 15q11.2 small nucleolar RNA, C/D box 115-48 snoRNA SNORD115-48 small nucleolar RNA, C/D box 115-48 O - 20121230 -9606 100034248 LOC100034248 - - - 19 19p13.3 uncharacterized LOC100034248 unknown - - - - 20121230 -9606 100034700 AA1 - - MIM:104000 18 18p11.3-p11.2 Alopecia areata 1 unknown - - - - 20120622 -9606 100034701 TAR - - MIM:274000 - - Thrombocytopenia-absent radius syndrome unknown - - - - 20121209 -9606 100034703 AA2 - - MIM:610753 16 16q11-q22 Alopecia areata 2 unknown - - - - 20120622 -9606 100034704 RHDNS1 - - MIM:610805 1 1p33-p32 Renal hypodysplasia, nonsyndromic, 1 unknown - - - - 20120622 -9606 100034705 MMVP3 - - MIM:610840 13 13q31.3-q32.1 Mitral valve prolapse, myxomatous 3 unknown - - - - 20120622 -9606 100034736 ANE1 - ADANE HGNC:33355 2 2q12.1-q13 acute necrotizing encephalopathy 1 (autosomal dominant) unknown ANE1 acute necrotizing encephalopathy 1 (autosomal dominant) O - 20120318 -9606 100034743 PDZK1P2 RP6-74O6.5 - HGNC:31975|Vega:OTTHUMG00000074107 1 1q21.2 PDZ domain containing 1 pseudogene 2 pseudo PDZK1P2 PDZ domain containing 1 pseudogene 2 O - 20121230 -9606 100036519 FOXD4L2 - - HGNC:24813|MIM:611085|Ensembl:ENSG00000204828|Vega:OTTHUMG00000066752 9 9p12 forkhead box D4-like 2 protein-coding FOXD4L2 forkhead box D4-like 2 O - 20121209 -9606 100036563 SNORD115-24 - HBII-52-24 HGNC:33043 15 15q11.2 small nucleolar RNA, C/D box 115-24 snoRNA SNORD115-24 small nucleolar RNA, C/D box 115-24 O - 20121230 -9606 100036564 SNORD115-27 - HBII-52-27 HGNC:33046 15 15q11.2 small nucleolar RNA, C/D box 115-27 snoRNA SNORD115-27 small nucleolar RNA, C/D box 115-27 O - 20121230 -9606 100036565 SNORD115-28 - HBII-52-28 HGNC:33047 15 15q11.2 small nucleolar RNA, C/D box 115-28 snoRNA SNORD115-28 small nucleolar RNA, C/D box 115-28 O - 20121230 -9606 100036566 SNORD115-45 - HBII-52-45|SNORD115-48 HGNC:33064 15 15q11.2 small nucleolar RNA, C/D box 115-45 snoRNA SNORD115-45 small nucleolar RNA, C/D box 115-45 O - 20121230 -9606 100036567 SNORD115-47 - HBII-52-46|HBII-52-47 HGNC:33065 15 15q11.2 small nucleolar RNA, C/D box 115-47 snoRNA SNORD115-47 small nucleolar RNA, C/D box 115-47 O - 20121230 -9606 100036574 HMGN1P3 - - HGNC:23343 14 14q24.1 high mobility group nucleosome binding domain 1 pseudogene 3 pseudo HMGN1P3 high mobility group nucleosome binding domain 1 pseudogene 3 O - 20121230 -9606 100036575 HMGN1P4 - - HGNC:39336 1 1q25.3 high mobility group nucleosome binding domain 1 pseudogene 4 pseudo HMGN1P4 high mobility group nucleosome binding domain 1 pseudogene 4 O - 20121230 -9606 100037264 STQTL6 - - MIM:300591 X Xq24-q25 stature quantitative trait locus 6 unknown - - - - 20120622 -9606 100037265 STQTL7 - - MIM:609822 1 1p21 stature quantitative trait locus 7 unknown - - - - 20120622 -9606 100037266 STQTL8 - - MIM:610114 9 9q22 stature quantitative trait locus 8 unknown - - - - 20120622 -9606 100037267 LOC100037267 - - - 11 11q13.4 developmental pluripotency associated 4 pseudogene pseudo - - - - 20121230 -9606 100037280 UBE2D3P1 - RP4-680N4|UBE2D3L|UBE2D3P|UBE2D5P HGNC:33349 20 20p12.3 ubiquitin-conjugating enzyme E2D 3 pseudogene 1 pseudo UBE2D3P1 ubiquitin-conjugating enzyme E2D 3 pseudogene 1 O - 20121230 -9606 100037417 DDTL - - HGNC:33446|Ensembl:ENSG00000099974|Vega:OTTHUMG00000150800 22 22q11.23 D-dopachrome tautomerase-like protein-coding DDTL D-dopachrome tautomerase-like O D-dopachrome decarboxylase-like protein|D-dopachrome tautomerase-like protein 20121230 -9606 100038246 TLX1NB - APT-B7|TD1|TDI HGNC:37183|MIM:612734 10 10q24 TLX1 neighbor protein-coding TLX1NB TLX1 neighbor O Putative protein TDI|TLX1 divergent gene protein|putative TLX1 neighbor protein 20121230 -9606 100038247 PTLS - - MIM:610883 17 17p11.2 Potocki-Lupski syndrome unknown - - - - 20120622 -9606 100038248 PSNP3 - - MIM:610898 11 11p12-p11 Supranuclear palsy, progressive, 3 unknown - - - - 20120622 -9606 100038747 SCA29 - ACV|CLA4 HGNC:33444|MIM:117360 3 3p26 spinocerebellar ataxia 29 unknown SCA29 spinocerebellar ataxia 29 O - 20120622 -9606 100048903 MCCD1P1 - - HGNC:33449|Vega:OTTHUMG00000130506 6 6p22.1-p21.33 mitochondrial coiled-coil domain 1 pseudogene 1 pseudo MCCD1P1 mitochondrial coiled-coil domain 1 pseudogene 1 O - 20121230 -9606 100048904 DDX39BP1 - BAT1P1 HGNC:33450 6 6p21.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 1 pseudo DDX39BP1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 1 O - 20121230 -9606 100048905 GBD2 - - HGNC:33452|MIM:609918 1 1p36.21 gallbladder disease 2 unknown GBD2 gallbladder disease 2 O - 20120622 -9606 100048906 GBD3 - - HGNC:33453|MIM:609919 1 1p34.3 gallbladder disease 3 unknown GBD3 gallbladder disease 3 O - 20120622 -9606 100048907 ZDHHC20P1 - - HGNC:33456|Vega:OTTHUMG00000086707 6 6p21.3 zinc finger, DHHC-type containing 20 pseudogene 1 pseudo ZDHHC20P1 zinc finger, DHHC-type containing 20 pseudogene 1 O - 20121230 -9606 100048908 ZDHHC20P2 - - HGNC:33457|Vega:OTTHUMG00000133740 6 6p21.3 zinc finger, DHHC-type containing 20 pseudogene 2 pseudo ZDHHC20P2 zinc finger, DHHC-type containing 20 pseudogene 2 O - 20121230 -9606 100048909 TMEM183AP1 - - HGNC:33458|Vega:OTTHUMG00000086663 6 6p21.3 transmembrane protein 183A pseudogene 1 pseudo TMEM183AP1 transmembrane protein 183A pseudogene 1 O - 20121230 -9606 100048912 CDKN2B-AS1 RP11-145E5.4 ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|p15AS HGNC:34341|MIM:613149 9 9p21.3 CDKN2B antisense RNA 1 miscRNA CDKN2B-AS1 CDKN2B antisense RNA 1 O - 20121230 -9606 100048922 RPL35AP4 - BPG294E21.7 HGNC:33460|Vega:OTTHUMG00000140156 6 6p21 ribosomal protein L35a pseudogene 4 pseudo RPL35AP4 ribosomal protein L35a pseudogene 4 O - 20121230 -9606 100048923 DDX39BP2 - BAT1P2|BPG309N1.15 HGNC:33461 6 6p21.33 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 2 pseudo DDX39BP2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 2 O - 20121230 -9606 100048924 MCCD1P2 - BPG309N1.16 HGNC:33462 6 6p21.33 mitochondrial coiled-coil domain 1 pseudogene 2 pseudo MCCD1P2 mitochondrial coiled-coil domain 1 pseudogene 2 O - 20121230 -9606 100049076 GUSBP9 - - HGNC:42323 5 5q13.2 glucuronidase, beta pseudogene 9 pseudo GUSBP9 glucuronidase, beta pseudogene 9 O - 20121230 -9606 100049159 SPG37 - - HGNC:33472|MIM:611945 8 8p21.2-q13.3 spastic paraplegia 37 (autosomal dominant) unknown SPG37 spastic paraplegia 37 (autosomal dominant) O - 20120622 -9606 100049160 FEB7 - - HGNC:33479|MIM:611515 21 21q22 febrile convulsions 7 unknown FEB7 febrile convulsions 7 O - 20120622 -9606 100049541 STUT1 - - MIM:184450 18 18p11.3-p11.2 Stuttering, familial persistent 1 unknown - - - - 20120622 -9606 100049542 SHFM3 - C10DUPq24|DUP10q24|SHSF3 MIM:246560 10 10q24 Split-hand/foot malformation 3 unknown - - - - 20120622 -9606 100049543 STUT2 - - MIM:609261 12 12q24.1 Stuttering, familial persistent 2 unknown - - - - 20120622 -9606 100049544 APMR2 - - MIM:610422 3 3q26.2-q26.31 Alopecia with mental retardation syndrome 2 unknown - - - - 20120622 -9606 100049579 OCTN3 - - - 5 5q31 organic cation transporter 3 protein-coding - - - - 20120318 -9606 100049587 SIGLEC14 UNQ294 - HGNC:32926|Ensembl:ENSG00000254415|Vega:OTTHUMG00000165511 19 19q13.4 sialic acid binding Ig-like lectin 14 protein-coding SIGLEC14 sialic acid binding Ig-like lectin 14 O sialic acid-binding Ig-like lectin 14|siglec-14 20121222 -9606 100049613 TRNAK3 - - HGNC:33256 11 11q12.1 transfer RNA lysine 3 (anticodon UUU) tRNA TRNAK3 transfer RNA lysine 3 (anticodon UUU) O - 20121230 -9606 100049614 TRNAV6 - TRV6 HGNC:33245 5 5q35.3 transfer RNA valine 6 (anticodon CAC) tRNA TRNAV6 transfer RNA valine 6 (anticodon CAC) O - 20121230 -9606 100049615 SKCG-1 - - - 11 - sporadic kidney cancer gene 1 unknown - - - - 20121230 -9606 100049707 SPG38 - - HGNC:33485|MIM:612335 4 4p16-p15 spastic paraplegia 38 (autosomal dominant, Silver syndrome) unknown SPG38 spastic paraplegia 38 (autosomal dominant, Silver syndrome) O - 20120622 -9606 100049716 LOC100049716 - - - 12 12p13.33 uncharacterized LOC100049716 unknown - - - - 20121230 -9606 100049717 LOC100049717 - - - 9 9p23 JNK1/MAPK8-associated membrane protein pseudogene pseudo - - - - 20121230 -9606 100073347 MIMT1 - LINC00067|MIM1|NCRNA00067 HGNC:33464 19 19q13.43 MER1 repeat containing imprinted transcript 1 (non-protein coding) miscRNA MIMT1 MER1 repeat containing imprinted transcript 1 (non-protein coding) O - 20121230 -9606 100073349 DFNB74 - - HGNC:33490 12 12q14.1-q15 deafness, autosomal recessive 74 unknown DFNB74 deafness, autosomal recessive 74 O - 20120318 -9606 100093624 CDH12P3 - - HGNC:37699 5 5q13.2 cadherin 12 (N-cadherin 2) pseudogene 3 pseudo CDH12P3 cadherin 12 (N-cadherin 2) pseudogene 3 O - 20121230 -9606 100093625 CDH12P1 - - HGNC:37698 5 5q13.2 cadherin 12 (N-cadherin 2) pseudogene 1 pseudo CDH12P1 cadherin 12 (N-cadherin 2) pseudogene 1 O - 20121230 -9606 100093626 CDH12P4 - - HGNC:37700 5 5q13.2 cadherin 12 (N-cadherin 2) pseudogene 4 pseudo CDH12P4 cadherin 12 (N-cadherin 2) pseudogene 4 O - 20121230 -9606 100093630 SNHG8 - LINC00060|NCRNA00060 HGNC:33098 4 4q26 small nucleolar RNA host gene 8 (non-protein coding) miscRNA SNHG8 small nucleolar RNA host gene 8 (non-protein coding) O - 20121230 -9606 100093631 LOC100093631 - - - 7 7q11.23 general transcription factor II, i, pseudogene pseudo - - - - 20121230 -9606 100093632 DFNA57 - - HGNC:33491 19 19p13.2 deafness, autosomal dominant 57 unknown DFNA57 deafness, autosomal dominant 57 O - 20120318 -9606 100093698 LOC100093698 - - - X - unknown transcript miscRNA - - - - 20121230 -9606 100093716 DFNB75 - - HGNC:33503 - - deafness, autosomal recessive 75 unknown DFNB75 deafness, autosomal recessive 75 O - 20120318 -9606 100101111 GXYLT1P1 - - HGNC:39676 13 13q11 glucoside xylosyltransferase 1 pseudogene 1 pseudo GXYLT1P1 glucoside xylosyltransferase 1 pseudogene 1 O - 20121230 -9606 100101112 CDC14BL - - - 7 7p12.3 CDC14 cell division cycle 14 C-like pseudo - - - - 20121230 -9606 100101115 TTTY21B - - HGNC:37980 Y Yp11.2 testis-specific transcript, Y-linked 21B (non-protein coding) miscRNA TTTY21B testis-specific transcript, Y-linked 21B (non-protein coding) O - 20121230 -9606 100101116 TTTY1B - - HGNC:37981 Y Yp11.2 testis-specific transcript, Y-linked 1B (non-protein coding) miscRNA TTTY1B testis-specific transcript, Y-linked 1B (non-protein coding) O - 20121230 -9606 100101117 TTTY2B - - HGNC:37982 Y Yp11.2 testis-specific transcript, Y-linked 2B (non-protein coding) miscRNA TTTY2B testis-specific transcript, Y-linked 2B (non-protein coding) O - 20121230 -9606 100101118 TTTY8B - NCRNA00217 HGNC:37622 Y Yp11.2 testis-specific transcript, Y-linked 8B (non-protein coding) miscRNA TTTY8B testis-specific transcript, Y-linked 8B (non-protein coding) O - 20121230 -9606 100101119 LOC100101119 - - - 9 9p12 S-phase kinase-associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100101120 TTTY7B - NCRNA00215 HGNC:37463 Y Yp11.2 testis-specific transcript, Y-linked 7B (non-protein coding) miscRNA TTTY7B testis-specific transcript, Y-linked 7B (non-protein coding) O - 20121209 -9606 100101121 TTTY23B - - HGNC:37983 Y Yp11.2 testis-specific transcript, Y-linked 23B (non-protein coding) miscRNA TTTY23B testis-specific transcript, Y-linked 23B (non-protein coding) O - 20121209 -9606 100101126 LOC100101126 - - - 7 7p thioredoxin-related transmembrane protein 1 pseudogene pseudo - - - - 20121230 -9606 100101127 LOC100101127 - - - 8 8q thioredoxin-related transmembrane protein 1 pseudogene pseudo - - - - 20121230 -9606 100101148 LOC100101148 - - - 7 7q11.2 FK506 binding protein 6, 36kDa pseudogene pseudo - - - - 20121230 -9606 100101246 LOC100101246 - - - 12 12q interferon induced transmembrane protein 3 pseudogene pseudo - - - - 20121230 -9606 100101247 LOC100101247 - - - 6 6p interferon induced transmembrane protein pseudogene pseudo - - - - 20121230 -9606 100101266 HAVCR1P1 - - HGNC:44033 19 19p hepatitis A virus cellular receptor 1 pseudogene 1 pseudo HAVCR1P1 hepatitis A virus cellular receptor 1 pseudogene 1 O - 20121230 -9606 100101267 POM121C - POM121-2 HGNC:34005|Ensembl:ENSG00000135213|Vega:OTTHUMG00000156238 7 7q11.2 POM121 transmembrane nucleoporin C protein-coding POM121C POM121 transmembrane nucleoporin C O POM121 membrane glycoprotein C|nuclear envelope pore membrane protein POM 121C|nuclear pore membrane protein 121-2|pore membrane protein of 121 kDa C 20121230 -9606 100101268 LOC100101268 - - - 7 7q11.2 Williams Beuren syndrome chromosome region 19 pseudogene pseudo - - - - 20121230 -9606 100101405 TMA16P1 - - HGNC:43780 11 11q12.1 translation machinery associated 16 homolog pseudogene 1 pseudo TMA16P1 translation machinery associated 16 homolog pseudogene 1 O - 20121230 -9606 100101407 TMA16P2 - - HGNC:43781 1 1p34.1 translation machinery associated 16 homolog pseudogene 2 pseudo TMA16P2 translation machinery associated 16 homolog pseudogene 2 O - 20121230 -9606 100101420 MRT12 - - HGNC:39151|MIM:611090 1 1p34-p33 mental retardation, non-syndromic, autosomal recessive, 12 unknown MRT12 mental retardation, non-syndromic, autosomal recessive, 12 O - 20120622 -9606 100101423 MRT8 - - HGNC:39147|MIM:611094 10 10q22 mental retardation, non-syndromic, autosomal recessive, 8 unknown MRT8 mental retardation, non-syndromic, autosomal recessive, 8 O - 20120622 -9606 100101424 MRT9 - MRT26 HGNC:39148|MIM:611095 14 14q11.2-q12 mental retardation, non-syndromic, autosomal recessive, 9 unknown MRT9 mental retardation, non-syndromic, autosomal recessive, 9 O - 20120622 -9606 100101425 MRT10 - MRT20 HGNC:39149|MIM:611096 16 16p12-q12 mental retardation, non-syndromic, autosomal recessive, 10 unknown MRT10 mental retardation, non-syndromic, autosomal recessive, 10 O - 20120622 -9606 100101426 MRT11 - - HGNC:39150|MIM:611097 19 19q13.2-q13.3 mental retardation, non-syndromic, autosomal recessive, 11 unknown MRT11 mental retardation, non-syndromic, autosomal recessive, 11 O - 20120622 -9606 100101440 PMS2LP2 - PMSR7 HGNC:33515 7 7q11.2 postmeiotic segregation increased 2-like pseudogene 2 pseudo PMS2LP2 postmeiotic segregation increased 2-like pseudogene 2 O - 20121230 -9606 100101467 ZSCAN30 - ZNF397OS|ZNF917 HGNC:33517|Ensembl:ENSG00000186814|Vega:OTTHUMG00000178569 18 18q12.2 zinc finger and SCAN domain containing 30 protein-coding ZSCAN30 zinc finger and SCAN domain containing 30 O ZNF-WYM|ZNF397 opposite strand|zinc finger and SCAN domain-containing protein 30|zinc finger protein 397 opposite strand|zinc finger protein 397OS 20121230 -9606 100101478 LOC100101478 - - - X Xq22 H2B histone family, member W, testis-specific pseudogene pseudo - - - - 20121230 -9606 100101483 LOC100101483 - - - 7 7p11.2 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100101490 PSIMCT-1 - - - 20 20q11.2 malignant T cell amplified sequence 1 pseudogene pseudo - - - - 20121230 -9606 100101554 BRI3P3 - - HGNC:32544 17 17p11.2 brain protein I3 pseudogene 3 pseudo BRI3P3 brain protein I3 pseudogene 3 O - 20121230 -9606 100101629 GAGE8 - CT4.8|GAGE-8 HGNC:4106|MIM:300638 X Xp11 G antigen 8 protein-coding GAGE8 G antigen 8 O G antigen 2D|cancer/testis antigen 4.8|cancer/testis antigen family 4, member 8 20121117 -9606 100101917 ELF2P1 - - HGNC:33539 X Xq22.2 E74-like factor 2 pseudogene 1 pseudo ELF2P1 E74-like factor 2 pseudogene 1 O - 20121230 -9606 100101932 GNG5P3 - - HGNC:33552 11 11q23.1 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 3 pseudo GNG5P3 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 3 O - 20121230 -9606 100101933 GNG5P4 - - HGNC:33553 2 2p13.1 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 4 pseudo GNG5P4 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 4 O - 20121230 -9606 100101935 GNG5P5 - - HGNC:33554 13 13q14.2 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 5 pseudo GNG5P5 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 5 O - 20121230 -9606 100101938 ANKRD26P3 hCG_1791940 LINC00414 HGNC:39689 13 13q12.11 ankyrin repeat domain 26 pseudogene 3 pseudo ANKRD26P3 ankyrin repeat domain 26 pseudogene 3 O - 20121230 -9606 100113373 HMGN2P17 RP3-477M7.4 - HGNC:39381 1 1p36.23 high mobility group nucleosomal binding domain 2 pseudogene 17 pseudo HMGN2P17 high mobility group nucleosomal binding domain 2 pseudogene 17 O - 20121230 -9606 100113374 LOC100113374 - - - 1 1q tRNA nucleotidyl transferase, CCA-adding, 1 pseudogene pseudo - - - - 20121230 -9606 100113375 LOC100113375 - - - 22 22q tRNA nucleotidyl transferase, CCA-adding, 1 pseudogene pseudo - - - - 20121230 -9606 100113378 SNORD119 - - HGNC:33558 20 20p13 small nucleolar RNA, C/D box 119 snoRNA SNORD119 small nucleolar RNA, C/D box 119 O - 20121230 -9606 100113379 SNORD121A - - HGNC:33560 9 9p13.3 small nucleolar RNA, C/D box 121A snoRNA SNORD121A small nucleolar RNA, C/D box 121A O - 20121230 -9606 100113380 SNORD125 - - HGNC:33564 22 22q12.2 small nucleolar RNA, C/D box 125 snoRNA SNORD125 small nucleolar RNA, C/D box 125 O - 20121230 -9606 100113381 SNORD19B - - HGNC:33570 3 3p21.1 small nucleolar RNA, C/D box 19B snoRNA SNORD19B small nucleolar RNA, C/D box 19B O - 20121230 -9606 100113382 SNORD105B - - HGNC:33572 19 19p13.2 small nucleolar RNA, C/D box 105B snoRNA SNORD105B small nucleolar RNA, C/D box 105B O - 20121230 -9606 100113383 PCBP3-OT1 - PCBP3OT HGNC:33548 21 21q22.3 PCBP3 overlapping transcript (non-protein coding) unknown PCBP3-OT1 PCBP3 overlapping transcript (non-protein coding) O - 20120622 -9606 100113384 SNORD123 - - HGNC:33562 5 5p15.2 small nucleolar RNA, C/D box 123 snoRNA SNORD123 small nucleolar RNA, C/D box 123 O - 20121230 -9606 100113385 SNORD121B - - HGNC:33569 9 9p13.3 small nucleolar RNA, C/D box 121B snoRNA SNORD121B small nucleolar RNA, C/D box 121B O - 20121230 -9606 100113386 UCKL1-AS1 - UCKL1-AS|UCKL1AS|UCKL1OS HGNC:31967 20 20q13.33 UCKL1 antisense RNA 1 miscRNA UCKL1-AS1 UCKL1 antisense RNA 1 O - 20121230 -9606 100113389 SNORD127 - - HGNC:33555 14 14q21.3 small nucleolar RNA, C/D box 127 snoRNA SNORD127 small nucleolar RNA, C/D box 127 O - 20121230 -9606 100113390 SNORD124 - - HGNC:33563 17 17q21.1 small nucleolar RNA, C/D box 124 snoRNA SNORD124 small nucleolar RNA, C/D box 124 O - 20121230 -9606 100113391 SNORD126 - MIR1201|MIRN1201 HGNC:33565 14 14q11.2 small nucleolar RNA, C/D box 126 snoRNA SNORD126 small nucleolar RNA, C/D box 126 O - 20121230 -9606 100113392 SNORD11B - - HGNC:33571 2 2q33.1 small nucleolar RNA, C/D box 11B snoRNA SNORD11B small nucleolar RNA, C/D box 11B O - 20121230 -9606 100113393 SNORD12B - - HGNC:33573 20 20q13.13 small nucleolar RNA, C/D box 12B snoRNA SNORD12B small nucleolar RNA, C/D box 12B O - 20121230 -9606 100113397 LOC100113397 - - - X Xp vezatin, adherens junctions transmembrane protein pseudogene pseudo - - - - 20121230 -9606 100113402 SNORD111B - MIR3647 HGNC:33579 16 16q22.1 small nucleolar RNA, C/D box 111B snoRNA SNORD111B small nucleolar RNA, C/D box 111B O - 20121230 -9606 100113403 LINC00577 - C6orf220|dJ439I14.1 HGNC:21553 6 6q21 long intergenic non-protein coding RNA 577 miscRNA LINC00577 long intergenic non-protein coding RNA 577 O - 20121230 -9606 100113404 LINC00583 RP11-284P20.1 C9orf146 HGNC:31437 9 9p23 long intergenic non-protein coding RNA 583 miscRNA LINC00583 long intergenic non-protein coding RNA 583 O - 20121230 -9606 100113407 TMEM170B RP11-679B17.1 - HGNC:34244|Ensembl:ENSG00000205269|Vega:OTTHUMG00000014259 6 6p24.2 transmembrane protein 170B protein-coding TMEM170B transmembrane protein 170B O - 20121230 -9606 100113421 LOC100113421 - - - 9 9q13 fibroblast growth factor 7 pseudogene pseudo - - - - 20121209 -9606 100114903 NRBF2P2 - - HGNC:44605 3 3p nuclear receptor binding factor 2 pseudogene 2 pseudo NRBF2P2 nuclear receptor binding factor 2 pseudogene 2 O - 20121230 -9606 100118954 NRBF2P5 - - HGNC:44683 10 10p nuclear receptor binding factor 2 pseudogene 5 pseudo NRBF2P5 nuclear receptor binding factor 2 pseudogene 5 O - 20121230 -9606 100124332 LOC100124332 - - - 10 10q Y box binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100124334 LOC100124334 - - - 15 15q Y box binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100124373 LOC100124373 - - - 6 6p ankyrin repeat domain 39 pseudogene pseudo - - - - 20121230 -9606 100124394 KLF3P2 - - HGNC:41519 3 3q Kruppel-like factor 3 (basic) pseudogene 2 pseudo KLF3P2 Kruppel-like factor 3 (basic) pseudogene 2 O - 20121230 -9606 100124401 LOC100124401 - - - 2 2p11.2 cytokine receptor-like factor 3 pseudogene pseudo - - - - 20121230 -9606 100124402 LOC100124402 - - - 7 7q ubiquitin-fold modifier conjugating enzyme 1 pseudogene pseudo - - - - 20121230 -9606 100124412 FAM138E - F379 HGNC:32335 15 15q26.3 family with sequence similarity 138, member E miscRNA FAM138E family with sequence similarity 138, member E O - 20121230 -9606 100124414 GINGF4 - GGF4|HGF4 HGNC:37734|MIM:611010 11 11p15 gingival fibromatosis, hereditary, 4 unknown GINGF4 gingival fibromatosis, hereditary, 4 O - 20120622 -9606 100124415 EKD2 - - MIM:611031 16 16q13-q22.1 Episodic kinesigenic dyskinesia 2 unknown - - - - 20120622 -9606 100124516 SNORD58C - U58 HGNC:33613 18 18q21.1 small nucleolar RNA, C/D box 58C snoRNA SNORD58C small nucleolar RNA, C/D box 58C O - 20121230 -9606 100124533 SCARNA27 - - HGNC:33614 6 6p24.3 small Cajal body-specific RNA 27 miscRNA SCARNA27 small Cajal body-specific RNA 27 O - 20121230 -9606 100124534 SNORA84 - - HGNC:33615 9 9q22.31 small nucleolar RNA, H/ACA box 84 snoRNA SNORA84 small nucleolar RNA, H/ACA box 84 O - 20121230 -9606 100124535 SNORA36C - - HGNC:33616 2 2p14 small nucleolar RNA, H/ACA box 36C snoRNA SNORA36C small nucleolar RNA, H/ACA box 36C O - 20121230 -9606 100124536 SNORA38B - - HGNC:33617 17 17q24.2 small nucleolar RNA, H/ACA box 38B snoRNA SNORA38B small nucleolar RNA, H/ACA box 38B O - 20121230 -9606 100124537 SNORA70B - - HGNC:33618 2 2p15 small nucleolar RNA, H/ACA box 70B snoRNA SNORA70B small nucleolar RNA, H/ACA box 70B O - 20121230 -9606 100124538 SNORA70C - U70C HGNC:33619 9 9q33.1 small nucleolar RNA, H/ACA box 70C snoRNA SNORA70C small nucleolar RNA, H/ACA box 70C O - 20121230 -9606 100124539 SNORA11B - - HGNC:33620 14 14q32.12 small nucleolar RNA, H/ACA box 11B snoRNA SNORA11B small nucleolar RNA, H/ACA box 11B O - 20121230 -9606 100124540 SNORA11C - - HGNC:33621 X Xp11.3 small nucleolar RNA, H/ACA box 11C snoRNA SNORA11C small nucleolar RNA, H/ACA box 11C O - 20121230 -9606 100124541 SNORA11D - - HGNC:33622 X Xp11.22 small nucleolar RNA, H/ACA box 11D snoRNA SNORA11D small nucleolar RNA, H/ACA box 11D O - 20121230 -9606 100124542 SNORA11E - - HGNC:33623 X Xp11.22 small nucleolar RNA, H/ACA box 11E snoRNA SNORA11E small nucleolar RNA, H/ACA box 11E O - 20121230 -9606 100124692 LOC100124692 - - - 7 7q34 maltase-glucoamylase (alpha-glucosidase) pseudogene pseudo - - - - 20120726 -9606 100124696 TEC - - MIM:227050 19 19q13.2 transient erythroblastopenia of childhood unknown - - - - 20120622 -9606 100124700 HOTAIR - HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072 HGNC:33510|MIM:611400 12 12q13.13 HOX transcript antisense RNA miscRNA HOTAIR HOX transcript antisense RNA O - 20121230 -9606 100125288 ZGLP1 - GLP-1|GLP1 HGNC:37245|MIM:611639|Ensembl:ENSG00000220201|Vega:OTTHUMG00000152114 19 19p13.2 zinc finger, GATA-like protein 1 protein-coding ZGLP1 zinc finger, GATA-like protein 1 O GATA like protein 1|GATA like protein-1|GATA-like protein 1|GATA-type zinc finger protein 1 20121230 -9606 100125387 HNRNPRP1 - - HGNC:44907 10 10p12.31 heterogeneous nuclear ribonucleoprotein R pseudogene 1 pseudo HNRNPRP1 heterogeneous nuclear ribonucleoprotein R pseudogene 1 O - 20121230 -9606 100125392 LOC100125392 - - - X Xp11.22 TIMELESS interacting protein pseudogene pseudo - - - - 20121230 -9606 100125393 LOC100125393 - - - 16 16q TIMELESS interacting protein pseudogene pseudo - - - - 20121230 -9606 100125409 LOC100125409 - - - 12 12q chromosome 4 open reading frame 27 pseudogene pseudo - - - - 20121230 -9606 100125556 FAM86JP - - HGNC:44097 3 3q21.2 family with sequence similarity 86, member A pseudogene pseudo FAM86JP family with sequence similarity 86, member J, pseudogene O - 20121230 -9606 100125918 LOC100125918 - - - - - uncharacterized LOC100125918 unknown - - - - 20120622 -9606 100126007 LOC100126007 - - - 13 13q LINE-1 type transposase domain containing 1 pseudogene pseudo - - - - 20121219 -9606 100126008 NUDT19P1 - - HGNC:43585 X Xq nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 1 pseudo NUDT19P1 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 1 O - 20121230 -9606 100126095 SAX2 - SATX2|SPAX2 HGNC:33157|MIM:611302 17 17p13 spastic ataxia 2 (autosomal recessive) unknown SAX2 spastic ataxia 2 (autosomal recessive) O - 20120622 -9606 100126270 FMR1-AS1 - ASFMR1|FMR1-AS|FMR1AS|FMR4 HGNC:39081|MIM:300805 X Xq27.3 FMR1 antisense RNA 1 miscRNA FMR1-AS1 FMR1 antisense RNA 1 O - 20121230 -9606 100126296 MIR298 - MIRN298|hsa-mir-298 HGNC:33634|MIM:614914|miRBase:MI0005523 20 20q13.32 microRNA 298 miscRNA MIR298 microRNA 298 O - 20121230 -9606 100126297 MIR300 - MIRN300|hsa-mir-300 HGNC:33636|miRBase:MI0005525 14 14q32.31 microRNA 300 miscRNA MIR300 microRNA 300 O - 20121230 -9606 100126299 VTRNA2-1 - CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886 HGNC:37054|MIM:614938 5 5q31.1 vault RNA 2-1 miscRNA VTRNA2-1 vault RNA 2-1 O - 20121230 -9606 100126301 MIR509-2 - MIRN509-2 HGNC:33641|miRBase:MI0005530 X Xq27.3 microRNA 509-2 miscRNA MIR509-2 microRNA 509-2 O - 20121230 -9606 100126302 MIR450B - MIRN450B HGNC:33642|miRBase:MI0005531 X Xq26.3 microRNA 450b miscRNA MIR450B microRNA 450b O - 20121230 -9606 100126303 MIR890 - MIRN890|hsa-mir-890 HGNC:33644|miRBase:MI0005533 X Xq27.3 microRNA 890 miscRNA MIR890 microRNA 890 O - 20121230 -9606 100126304 MIR891B - MIRN891B HGNC:33645|miRBase:MI0005534 X Xq27.3 microRNA 891b miscRNA MIR891B microRNA 891b O - 20121230 -9606 100126306 MIR888 - MIRN888|hsa-mir-888 HGNC:33648|miRBase:MI0005537 X Xq27.3 microRNA 888 miscRNA MIR888 microRNA 888 O - 20121230 -9606 100126307 MIR892B - MIRN892B HGNC:33649|miRBase:MI0005538 X Xq27.3 microRNA 892b miscRNA MIR892B microRNA 892b O - 20121230 -9606 100126308 MIR541 - MIRN541|hsa-mir-541 HGNC:33650|miRBase:MI0005539 14 14q32.31 microRNA 541 miscRNA MIR541 microRNA 541 O - 20121230 -9606 100126309 MIR875 - MIRN875|hsa-mir-875 HGNC:33652|miRBase:MI0005541 8 8q22.2 microRNA 875 miscRNA MIR875 microRNA 875 O - 20121230 -9606 100126310 MIR876 - MIRN876|hsa-mir-876 HGNC:33653|miRBase:MI0005542 9 9p21.1 microRNA 876 miscRNA MIR876 microRNA 876 O - 20121230 -9606 100126311 MIR147B - MIRN147B HGNC:33655|miRBase:MI0005544 15 15q21.1 microRNA 147b miscRNA MIR147B microRNA 147b O - 20121230 -9606 100126313 MIR744 - MIRN744|hsa-mir-744 HGNC:33658|miRBase:MI0005559 17 17p12 microRNA 744 miscRNA MIR744 microRNA 744 O - 20121230 -9606 100126314 MIR877 - MIRN877|hsa-mir-877|miRNA877 HGNC:33660|MIM:611619|miRBase:MI0005561 6 6p21.33 microRNA 877 miscRNA MIR877 microRNA 877 O - 20121230 -9606 100126315 MIR665 - MIRN665|hsa-mir-665 HGNC:33662|miRBase:MI0005563 14 14q32.2 microRNA 665 miscRNA MIR665 microRNA 665 O - 20121230 -9606 100126316 MIR873 - MIRN873|hsa-mir-873 HGNC:33663|miRBase:MI0005564 9 9p21.1 microRNA 873 miscRNA MIR873 microRNA 873 O - 20121230 -9606 100126317 MIR374B - MIRN374B HGNC:33665|miRBase:MI0005566 X Xq13.2 microRNA 374b miscRNA MIR374B microRNA 374b O - 20121230 -9606 100126318 MIR301B - MIRN301B HGNC:33667|miRBase:MI0005568 22 22q11.21 microRNA 301b miscRNA MIR301B microRNA 301b O - 20121230 -9606 100126319 MIR216B - MIRN216B HGNC:33668|miRBase:MI0005569 2 2p16.1 microRNA 216b miscRNA MIR216B microRNA 216b O - 20121230 -9606 100126320 MIR920 - MIRN920|hsa-mir-920 HGNC:33670|miRBase:MI0005712 12 12p12.1 microRNA 920 miscRNA MIR920 microRNA 920 O - 20121230 -9606 100126321 MIR922 - MIRN922|hsa-mir-922 HGNC:33672|miRBase:MI0005714 3 3q29 microRNA 922 miscRNA MIR922 microRNA 922 O - 20121230 -9606 100126323 MIR924 - MIRN924|hsa-mir-924 HGNC:33674|miRBase:MI0005716 18 18q12.3 microRNA 924 miscRNA MIR924 microRNA 924 O - 20121230 -9606 100126324 MIR934 - MIRN934|hsa-mir-934 HGNC:33677|miRBase:MI0005756 X Xq26.3 microRNA 934 miscRNA MIR934 microRNA 934 O - 20121230 -9606 100126325 MIR935 - MIRN935|hsa-mir-935 HGNC:33678|miRBase:MI0005757 19 19q13.42 microRNA 935 miscRNA MIR935 microRNA 935 O - 20121230 -9606 100126326 MIR936 - MIRN936|hsa-mir-936 HGNC:33679|miRBase:MI0005758 10 10q25.1 microRNA 936 miscRNA MIR936 microRNA 936 O - 20121230 -9606 100126327 MIR938 - MIRN938|hsa-mir-938 HGNC:33681|miRBase:MI0005760 10 10p11.23 microRNA 938 miscRNA MIR938 microRNA 938 O - 20121230 -9606 100126328 MIR940 - MIRN940|hsa-mir-940 HGNC:33683|miRBase:MI0005762 16 16p13.3 microRNA 940 miscRNA MIR940 microRNA 940 O - 20121230 -9606 100126329 MIR941-1 - MIRN941-1 HGNC:33684|miRBase:MI0005763 20 20q13.33 microRNA 941-1 miscRNA MIR941-1 microRNA 941-1 O - 20121230 -9606 100126330 MIR941-4 - MIRN941-4 HGNC:33687|miRBase:MI0005766 20 20q13.33 microRNA 941-4 miscRNA MIR941-4 microRNA 941-4 O - 20121230 -9606 100126331 MIR942 - MIRN942|hsa-mir-942 HGNC:33688|miRBase:MI0005767 1 1p13.1 microRNA 942 miscRNA MIR942 microRNA 942 O - 20121230 -9606 100126332 MIR943 - MIRN943|hsa-mir-943 HGNC:33689|miRBase:MI0005768 4 4p16.3 microRNA 943 miscRNA MIR943 microRNA 943 O - 20121230 -9606 100126333 MIR708 - MIRN708|hsa-mir-708 HGNC:33654|miRBase:MI0005543 11 11q14.1 microRNA 708 miscRNA MIR708 microRNA 708 O - 20121230 -9606 100126334 MIR885 - MIRN885|hsa-mir-885 HGNC:33659|miRBase:MI0005560 3 3p25.3 microRNA 885 miscRNA MIR885 microRNA 885 O - 20121230 -9606 100126335 MIR543 - MIRN543|hsa-mir-543 HGNC:33664|miRBase:MI0005565 14 14q32.31 microRNA 543 miscRNA MIR543 microRNA 543 O - 20121230 -9606 100126336 MIR208B - MIRN208B HGNC:33669|MIM:613613|miRBase:MI0005570 14 14q11.2 microRNA 208b miscRNA MIR208B microRNA 208b O - 20121230 -9606 100126337 MIR509-3 - MIRN509-3 HGNC:33675|MIM:300876|miRBase:MI0005717 X - microRNA 509-3 miscRNA MIR509-3 microRNA 509-3 O - 20121230 -9606 100126338 MIR937 - MIRN937|hsa-mir-937 HGNC:33680|miRBase:MI0005759 8 8q24.3 microRNA 937 miscRNA MIR937 microRNA 937 O - 20121230 -9606 100126339 MIR941-2 - MIRN941-2 HGNC:33685|miRBase:MI0005764 20 20q13.33 microRNA 941-2 miscRNA MIR941-2 microRNA 941-2 O - 20121230 -9606 100126340 MIR944 - MIRN944|hsa-mir-944 HGNC:33690|miRBase:MI0005769 3 3q28 microRNA 944 miscRNA MIR944 microRNA 944 O - 20121230 -9606 100126341 MIR891A - MIRN891A HGNC:33635|miRBase:MI0005524 X Xq27.3 microRNA 891a miscRNA MIR891A microRNA 891a O - 20121230 -9606 100126342 MIR892A - MIRN892A HGNC:33639|miRBase:MI0005528 X Xq27.3 microRNA 892a miscRNA MIR892A microRNA 892a O - 20121230 -9606 100126343 MIR874 - MIRN874|hsa-mir-874 HGNC:33643|miRBase:MI0005532 5 5q31.2 microRNA 874 miscRNA MIR874 microRNA 874 O - 20121230 -9606 100126345 MIR889 - MIRN889|hsa-mir-889 HGNC:33651|miRBase:MI0005540 14 14q32.31 microRNA 889 miscRNA MIR889 microRNA 889 O - 20121230 -9606 100126346 MIR190B - MIRN190B HGNC:33656|miRBase:MI0005545 1 1q21.3 microRNA 190b miscRNA MIR190B microRNA 190b O - 20121230 -9606 100126347 MIR887 - MIRN887|hsa-mir-887 HGNC:33661|miRBase:MI0005562 5 5p15.1 microRNA 887 miscRNA MIR887 microRNA 887 O - 20121230 -9606 100126348 MIR760 - MIRN760|hsa-mir-760 HGNC:33666|miRBase:MI0005567 1 1p22.1 microRNA 760 miscRNA MIR760 microRNA 760 O - 20121230 -9606 100126349 MIR921 - MIRN921|hsa-mir-921 HGNC:33671|miRBase:MI0005713 1 1q24.1 microRNA 921 miscRNA MIR921 microRNA 921 O - 20121230 -9606 100126350 MIR933 - MIRN933|hsa-mir-933 HGNC:33676|miRBase:MI0005755 2 2q31.1 microRNA 933 miscRNA MIR933 microRNA 933 O - 20121230 -9606 100126351 MIR939 - MIRN939|hsa-mir-939 HGNC:33682|miRBase:MI0005761 8 8q24.3 microRNA 939 miscRNA MIR939 microRNA 939 O - 20121230 -9606 100126352 MIR941-3 - MIRN941-3 HGNC:33686|miRBase:MI0005765 20 20q13.33 microRNA 941-3 miscRNA MIR941-3 microRNA 941-3 O - 20121230 -9606 100126354 MIR297 - MIRN297|hsa-mir-297 HGNC:33691|miRBase:MI0005775 4 4q25 microRNA 297 miscRNA MIR297 microRNA 297 O - 20121230 -9606 100126355 MIR365A - MIR365-1|MIRN365-1|hsa-mir-365a HGNC:33692|MIM:614735|miRBase:MI0000767 16 16p13.12 microRNA 365a miscRNA MIR365A microRNA 365a O - 20121230 -9606 100126356 MIR365B - MIR365-2|MIRN365-2|hsa-mir-365b HGNC:33693|miRBase:MI0000769 17 17q11.2 microRNA 365b miscRNA MIR365B microRNA 365b O - 20121230 -9606 100126446 DEPDC1P2 RP11-18B3.2 - HGNC:33975 9 9q31.2 DEP domain containing 1 pseudogene 2 pseudo DEPDC1P2 DEP domain containing 1 pseudogene 2 O - 20121230 -9606 100126447 LOC100126447 - - - X Xq23 uncharacterized LOC100126447 unknown - - - - 20121230 -9606 100126448 LOC100126448 - - - - - uncharacterized LOC100126448 unknown - - - - 20120508 -9606 100126474 TRNAF-GAA - - - 6 6p22.1 transfer RNA phenylalanine (anticodon GAA) tRNA - - - - 20120318 -9606 100126475 TRNAL-UAA - - - 6 6q24.2 transfer RNA leucine (anticodon UAA) tRNA - - - - 20120318 -9606 100126476 TRNAL-CAA - - - 6 6p22.1 transfer RNA leucine (anticodon CAA) tRNA - - - - 20121230 -9606 100126477 TRNAL-AAG - - - 6 6p22.1 transfer RNA leucine (anticodon AAG) tRNA - - - - 20121230 -9606 100126479 TRNAL-UAG - - - 17 17p13.1 transfer RNA leucine (anticodon UAG) tRNA - - - - 20121230 -9606 100126480 TRNAL-CAG - - - 6 6p22.2 transfer RNA leucine (anticodon CAG) tRNA - - - - 20120318 -9606 100126481 TRNAI-AAU - - - 6 6p11.2 transfer RNA isoleucine (anticodon AAU) tRNA - - - - 20121230 -9606 100126482 TRNAI-GAU - - - X Xp22.33 transfer RNA isoleucine (anticodon GAU) tRNA - - - - 20120318 -9606 100126483 TRNAI-UAU - - - 6 6p22.1 transfer RNA isoleucine (anticodon UAU) tRNA - - - - 20120318 -9606 100126484 TRNAM-CAU - - - 8 8q24.13 transfer RNA methionine (anticodon CAU) tRNA - - - - 20121230 -9606 100126485 TRNAV-AAC - - - 6 6p22.1 transfer RNA valine (anticodon AAC) tRNA - - - - 20120318 -9606 100126487 TRNAV-UAC - - - X Xp22.13 transfer RNA valine (anticodon UAC) tRNA - - - - 20120318 -9606 100126488 TRNAV-CAC - - - 6 6p22.1 transfer RNA valine (anticodon CAC) tRNA - - - - 20121230 -9606 100126489 TRNAS-AGA - - - 8 8q22.1 transfer RNA serine (anticodon AGA) tRNA - - - - 20120318 -9606 100126491 TRNAS-UGA - - - 6 6p22.1 transfer RNA serine (anticodon UGA) tRNA - - - - 20120318 -9606 100126492 TRNAS-CGA - - - 6 6p22.1 transfer RNA serine (anticodon CGA) tRNA - - - - 20120318 -9606 100126493 TRNAP-AGG - - - 7 7q32.1 transfer RNA proline (anticodon AGG) tRNA - - - - 20120318 -9606 100126495 TRNAP-UGG - - - 5 5q35.3 transfer RNA proline (anticodon UGG) tRNA - - - - 20120318 -9606 100126496 TRNAP-CGG - - - 6 6p22.1 transfer RNA proline (anticodon CGG) tRNA - - - - 20120318 -9606 100126497 TRNAT-AGU - - - 6 6p22.1 transfer RNA threonine (anticodon AGU) tRNA - - - - 20120318 -9606 100126499 TRNAT-UGU - - - 6 6p22.1 transfer RNA threonine (anticodon UGU) tRNA - - - - 20120318 -9606 100126500 TRNAT-CGU - - - 6 6p22.1 transfer RNA threonine (anticodon CGU) tRNA - - - - 20120318 -9606 100126501 TRNAA-AGC - - - 8 8q13.1 transfer RNA alanine (anticodon AGC) tRNA - - - - 20121230 -9606 100126503 TRNAA-UGC - - - 6 6p22.1 transfer RNA alanine (anticodon UGC) tRNA - - - - 20120318 -9606 100126504 TRNAA-CGC - - - 6 6p22.1 transfer RNA alanine (anticodon CGC) tRNA - - - - 20120318 -9606 100126505 TRNAY-AUA - - - 2 2q35 transfer RNA tyrosine (anticodon AUA) tRNA - - - - 20120318 -9606 100126506 TRNAY-GUA - - - 8 8q13.1 transfer RNA tyrosine (anticodon GUA) tRNA - - - - 20120318 -9606 100126508 TRNAH-GUG - - - 9 9p22.3 transfer RNA histidine(anticodon GUG) tRNA - - - - 20121230 -9606 100126509 TRNAQ-UUG - - - 6 6q24.2 transfer RNA glutamine (anticodon UUG) tRNA - - - - 20120318 -9606 100126510 TRNAQ-CUG - - - 6 6p22.1 transfer RNA glutamine (anticodon CUG) tRNA - - - - 20121230 -9606 100126512 TRNAN-GUU - - - 19 19p13.3 transfer RNA asparagine (anticodon GUU) tRNA - - - - 20121230 -9606 100126513 TRNAK-UUU - - - 6 6p22.1 transfer RNA lysine (anticodon UUU) tRNA - - - - 20121230 -9606 100126514 TRNAK-CUU - - - 6 6p22.2 transfer RNA lysine (anticodon CUU) tRNA - - - - 20121230 -9606 100126516 TRNAD-GUC - - - 6 6p22.1 transfer RNA aspartic acid (anticodon GUC) tRNA - - - - 20121230 -9606 100126517 TRNAE-UUC - - - 2 2q21.1 transfer RNA glutamic acid (anticodon UUC) tRNA - - - - 20121230 -9606 100126518 TRNAE-CUC - - - 6 6q22.32 transfer RNA glutamic acid (anticodon CUC) tRNA - - - - 20121230 -9606 100126520 TRNAC-GCA - - - 7 7q36.1 transfer RNA cysteine (anticodon GCA) tRNA - - - - 20121230 -9606 100126521 TRNAW-CCA - - - 7 7q22.1 transfer RNA tryptophan (anticodon CCA) tRNA - - - - 20120318 -9606 100126522 TRNAR-ACG - - - 6 6p22.1 transfer RNA arginine (anticodon ACG) tRNA - - - - 20120318 -9606 100126523 TRNAR-CCG - - - 6 6p22.1 transfer RNA arginine (anticodon CCG) tRNA - - - - 20120318 -9606 100126524 TRNAR-UCG - - - 9 9q31.3 transfer RNA arginine (anticodon UCG) tRNA - - - - 20120318 -9606 100126526 TRNAR-UCU - - - 9 9q34.11 transfer RNA arginine (anticodon UCU) tRNA - - - - 20120318 -9606 100126527 TRNAR-CCU - - - 7 7q34 transfer RNA arginine (anticodon CCU) tRNA - - - - 20120318 -9606 100126529 TRNAS-GCU - - - 6 6p22.1 transfer RNA serine (anticodon GCU) tRNA - - - - 20120318 -9606 100126531 TRNAG-GCC - - - 6 6p22.1 transfer RNA glycine (anticodon GCC) tRNA - - - - 20121230 -9606 100126532 TRNAG-UCC - - - 19 19p13.3 transfer RNA glycine (anticodon UCC) tRNA - - - - 20121230 -9606 100126533 TRNAG-CCC - - - 2 2p13.3 transfer RNA glycine (anticodon CCC) tRNA - - - - 20121230 -9606 100126534 TRNASTOP-UCA - - - 22 22q13.31 transfer RNA opal suppressor (anticodon UCA) tRNA - - - - 20120318 -9606 100126536 TRNASTOP-UUA - - - 17 17q23.2 transfer RNA ochre suppressor(anticodon UUA) tRNA - - - - 20120318 -9606 100126572 GJE1 - CX23 HGNC:33251 6 6q24.1 gap junction protein, epsilon 1, 23kDa protein-coding GJE1 gap junction protein, epsilon 1, 23kDa O connexin-23|gap junction epsilon-1 protein 20121021 -9606 100126582 LOC100126582 - - - 9 - uncharacterized LOC100126582 unknown - - - - 20121230 -9606 100126584 LOC100126584 - - - - - uncharacterized LOC100126584 unknown - - - - 20120622 -9606 100126593 MAFD4 - BPAD MIM:611247 16 16p12 Major affective disorder 4 unknown - - - - 20120622 -9606 100126594 EJM4 - - MIM:611364 5 5q12-q14 Myoclonic epilepsy, juvenile, 4 unknown - - - - 20120622 -9606 100126595 MGS - - MIM:611376 8 8q23-q24 Mungen syndrome unknown - - - - 20120622 -9606 100126596 CUX2P1 - - HGNC:33694 10 10p14 cut-like homeobox 2 pseudogene 1 pseudo CUX2P1 cut-like homeobox 2 pseudogene 1 O - 20121230 -9606 100126597 CUX2P2 - - HGNC:33695 4 4q32.1 cut-like homeobox 2 pseudogene 2 pseudo CUX2P2 cut-like homeobox 2 pseudogene 2 O - 20120318 -9606 100126693 LINC00322 - C21orf136|NCRNA00322 HGNC:33698 21 21q22.3 long intergenic non-protein coding RNA 322 unknown LINC00322 long intergenic non-protein coding RNA 322 O - 20121230 -9606 100126780 SNAR-G1 - - HGNC:34327 19 19q13.33 small ILF3/NF90-associated RNA G1 snRNA SNAR-G1 small ILF3/NF90-associated RNA G1 O - 20121230 -9606 100126781 SNAR-F - - HGNC:34326 19 19q13.33 small ILF3/NF90-associated RNA F snRNA SNAR-F small ILF3/NF90-associated RNA F O - 20121230 -9606 100126784 LOC100126784 - - - 11 11p15.1 uncharacterized LOC100126784 miscRNA - - - - 20121230 -9606 100126791 EGOT - EGO|NCRNA00190 HGNC:37129|MIM:611662 3 3p26.1 eosinophil granule ontogeny transcript (non-protein coding) miscRNA EGOT eosinophil granule ontogeny transcript (non-protein coding) O - 20121230 -9606 100126793 GHRLOS - GHRL-AS1|GHRLAS|NCRNA00068 HGNC:33885 3 3p25.3 ghrelin opposite strand/antisense RNA miscRNA GHRLOS ghrelin opposite strand/antisense RNA O - 20121230 -9606 100126794 GAEC1 - - MIM:612130 7 7q22.1 gene amplified in esophageal cancer 1 other - - - - 20120318 -9606 100126798 SNAR-A1 - SNAR-A53113498 HGNC:34304 19 19q13.33 small ILF3/NF90-associated RNA A1 snRNA SNAR-A1 small ILF3/NF90-associated RNA A1 O - 20121230 -9606 100126799 SNAR-A2 - SNAR-A53129250 HGNC:34305 19 19q13.33 small ILF3/NF90-associated RNA A2 snRNA SNAR-A2 small ILF3/NF90-associated RNA A2 O - 20121230 -9606 100126800 SNAR-A12 - SNAR-A53102747 HGNC:34315 19 19q13.33 small ILF3/NF90-associated RNA A12 snRNA SNAR-A12 small ILF3/NF90-associated RNA A12 O - 20121230 -9606 100126822 LOC100126822 - - - 1 1q42.13 ubiquitin-like modifier activating enzyme 5 pseudogene pseudo - - - - 20121230 -9606 100126825 GJA6P RP1-245G19.2 - HGNC:32542 X Xp22 gap junction protein, alpha 6, pseudogene pseudo GJA6P gap junction protein, alpha 6, pseudogene O - 20121230 -9606 100127050 VN2R21P - - HGNC:33938 19 19p13.2 vomeronasal 2 receptor 21 pseudogene pseudo VN2R21P vomeronasal 2 receptor 21 pseudogene O - 20121230 -9606 100127173 HLA-Y - HLA-DEL|HLA-GOR HGNC:33913 6 6p21.33 major histocompatibility complex, class I, Y (pseudogene) pseudo HLA-Y major histocompatibility complex, class I, Y (pseudogene) O - 20120318 -9606 100127206 KIAA1024L - - HGNC:33914|Ensembl:ENSG00000186367|Vega:OTTHUMG00000163041 5 5q23.3 KIAA1024-like protein-coding KIAA1024L KIAA1024-like O UPF0258 protein KIAA1024-like 20121230 -9606 100127883 IBTKP1 - - HGNC:31672 18 18q12.3 IBTK pseudogene 1 pseudo IBTKP1 IBTK pseudogene 1 O - 20121230 -9606 100127886 LOC100127886 PRO0628 - - 20 20q12 uncharacterized LOC100127886 unknown - - - putative uncharacterized protein PRO0628 20120511 -9606 100127888 LOC100127888 hCG_2018279 - - 20 20q13.33 uncharacterized LOC100127888 miscRNA - - - - 20121230 -9606 100127889 C10orf131 RP11-690P14.3 bA690P14.3 HGNC:31667|Ensembl:ENSG00000173088 10 10q24.1 chromosome 10 open reading frame 131 protein-coding C10orf131 chromosome 10 open reading frame 131 O uncharacterized protein C10orf131 20121230 -9606 100127892 LOC100127892 - - - 3 3q13.31 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene pseudo - - - - 20121230 -9606 100127893 RPL7P24 - RPL7_8_586 HGNC:36715 5 5q14.1 ribosomal protein L7 pseudogene 24 pseudo RPL7P24 ribosomal protein L7 pseudogene 24 O - 20121230 -9606 100127900 LOC100127900 - - - 6 6q13 nucleoporin 50kDa pseudogene pseudo - - - - 20121230 -9606 100127902 LOC100127902 - - - X Xq12 BMI1 polycomb ring finger oncogene pseudogene pseudo - - - - 20121230 -9606 100127903 LOC100127903 - - - 4 4q13.2 speckle-type POZ protein-like pseudogene pseudo - - - - 20121230 -9606 100127904 LOC100127904 - - - 20 20q13.12 uncharacterized LOC100127904 unknown - - - - 20120511 -9606 100127905 SMIM11P1 RP11-33E24.4 C6orf161|FAM165A|bA33E24.4 HGNC:21400 6 6q14.3 small integral membrane protein 11 pseudogene 1 pseudo SMIM11P1 small integral membrane protein 11 pseudogene 1 O - 20121230 -9606 100127906 PQLC1P2 - - HGNC:43987 4 4q21.22 PQ loop repeat containing 1 pseudogene 2 pseudo PQLC1P2 PQ loop repeat containing 1 pseudogene 2 O - 20121230 -9606 100127907 LOC100127907 - - - 7 7q11.21 heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudogene pseudo - - - - 20121230 -9606 100127908 LOC100127908 - - - 6 6q23.2 selenoprotein K pseudogene pseudo - - - - 20121230 -9606 100127909 LOC100127909 - - - 18 18q21.1 uncharacterized LOC100127909 unknown - - - - 20121230 -9606 100127910 LOC100127910 - - - 1 1q24.2 uncharacterized LOC100127910 unknown - - - - 20121230 -9606 100127911 ST13P12 - - HGNC:38787 5 5q14.2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 12 pseudo ST13P12 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 12 O - 20121230 -9606 100127912 LOC100127912 - - - 4 4q28.2 chromosome 2 open reading frame 27B pseudogene pseudo - - - - 20121230 -9606 100127917 LOC100127917 - - - 6 6q14.3 heat shock protein 90kDa alpha (cytosolic), class B member 1 pseudogene pseudo - - - - 20121230 -9606 100127919 LOC100127919 - - - 12 12q22 developmental pluripotency associated 3 pseudogene pseudo - - - - 20121230 -9606 100127922 SUMO2P6 - - HGNC:39016 5 5q35.2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 6 pseudo SUMO2P6 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 6 O - 20121230 -9606 100127924 RPS15AP14 - RPS15A_4_297 HGNC:36629 2 2q31.1 ribosomal protein S15a pseudogene 14 pseudo RPS15AP14 ribosomal protein S15a pseudogene 14 O - 20121230 -9606 100127934 LOC100127934 - - - 1 1p22.1 meiotic nuclear divisions 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100127938 LOC100127938 - - - 11 11q22.1 KIAA1191 pseudogene pseudo - - - - 20121230 -9606 100127940 LOC100127940 - - - 7 7p22.3 uncharacterized LOC100127940 unknown - - - - 20120511 -9606 100127945 SOCS5P3 - - HGNC:44599 3 3p21.31 suppressor of cytokine signaling 5 pseudogene 3 pseudo SOCS5P3 suppressor of cytokine signaling 5 pseudogene 3 O - 20121230 -9606 100127946 LOC100127946 - - - 11 11q13.3 uncharacterized LOC100127946 protein-coding - - - - 20121209 -9606 100127947 LOC100127947 PP632 - - 1 1p34.3 uncharacterized LOC100127947 unknown - - - - 20121230 -9606 100127949 RPL15P16 - RPL15_9_1154 HGNC:36067 11 11q13.4 ribosomal protein L15 pseudogene 16 pseudo RPL15P16 ribosomal protein L15 pseudogene 16 O - 20121230 -9606 100127950 HECW1-IT1 - - HGNC:41465 7 7p14.1 HECW1 intronic transcript 1 (non-protein coding) unknown HECW1-IT1 HECW1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100127951 LOC100127951 UNQ6484 - - 16 16q22.2 ISPF6484 unknown - - - - 20121017 -9606 100127952 ATF4P4 - ATF4B HGNC:787 11 11q23.2 activating transcription factor 4 pseudogene 4 pseudo ATF4P4 activating transcription factor 4 pseudogene 4 O - 20121230 -9606 100127954 LOC100127954 - - - 11 11q12.3 pituitary tumor-transforming 1 pseudogene pseudo - - - - 20121230 -9606 100127955 LOC100127955 - - - 7 7p22.3 uncharacterized LOC100127955 unknown - - - - 20120508 -9606 100127958 LOC100127958 - - - 16 16p11.2 angiogenic factor with G patch and FHA domains 1 pseudogene pseudo - - - - 20121230 -9606 100127960 BCAS2P1 - - HGNC:39594 11 11q14.1 breast carcinoma amplified sequence 2 pseudogene 1 pseudo BCAS2P1 breast carcinoma amplified sequence 2 pseudogene 1 O - 20121230 -9606 100127962 LOC100127962 - - - 9 9q31.1 family with sequence similarity 190, member B pseudogene pseudo - - - - 20121230 -9606 100127963 RPS3AP48 - RPS3A_22_1469 HGNC:36792 16 16p13.3 ribosomal protein S3a pseudogene 48 pseudo RPS3AP48 ribosomal protein S3a pseudogene 48 O - 20121230 -9606 100127965 LOC100127965 - - - 16 16p11.2 ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 100127967 LOC100127967 - - - 12 12q13.13 uncharacterized LOC100127967 miscRNA - - - - 20120511 -9606 100127969 VN1R96P - - HGNC:37416 19 19q13.2 vomeronasal 1 receptor 96 pseudogene pseudo VN1R96P vomeronasal 1 receptor 96 pseudogene O - 20121230 -9606 100127971 LOC100127971 - - - 12 12q13.13 uncharacterized LOC100127971 protein-coding - - - uncharacterized protein LOC100127971 20121018 -9606 100127972 LOC100127972 - - - 19 19q13.12 uncharacterized LOC100127972 unknown - - - - 20120622 -9606 100127974 LOC100127974 - - - 12 12p13.31 uncharacterized LOC100127974 unknown - - - - 20121230 -9606 100127976 VTI1BP3 - - HGNC:43729 12 12q13.13 vesicle transport through interaction with t-SNAREs 1B pseudogene 3 pseudo VTI1BP3 vesicle transport through interaction with t-SNAREs 1B pseudogene 3 O - 20121230 -9606 100127978 LOC100127978 - - - 12 12q13.11 starch binding domain 1 pseudogene pseudo - - - - 20121230 -9606 100127979 FUNDC2P4 - - HGNC:37971 22 22q13.1 FUN14 domain containing 2 pseudogene 4 pseudo FUNDC2P4 FUN14 domain containing 2 pseudogene 4 O - 20121230 -9606 100127981 LOC100127981 - - - 4 4q35.1 fibrillarin pseudogene pseudo - - - - 20121230 -9606 100127982 LOC100127982 - - - 8 8q22.1 transmembrane protein 69 pseudogene pseudo - - - - 20121230 -9606 100127983 LOC100127983 - - Ensembl:ENSG00000253250|Vega:OTTHUMG00000164011 8 8q21.3 uncharacterized LOC100127983 protein-coding - - - uncharacterized protein LOC100127983 20121230 -9606 100127986 LOC100127986 - - - 5 5q23.1 cation channel, sperm associated 2 pseudogene pseudo - - - - 20121230 -9606 100127989 LOC100127989 - - - 2 2q21.1 mediator complex subunit 15 pseudogene pseudo - - - - 20121230 -9606 100127991 LOC100127991 - - - 7 7q36.3 uncharacterized LOC100127991 protein-coding - - - - 20120511 -9606 100127993 RPL15P5 - RPL15_1_277 HGNC:35746 2 2q22.1 ribosomal protein L15 pseudogene 5 pseudo RPL15P5 ribosomal protein L15 pseudogene 5 O - 20121230 -9606 100127994 LOC100127994 - - - 18 18q23 uncharacterized LOC100127994 unknown - - - - 20120511 -9606 100127995 RPL34P7 - RPL34_1_168 HGNC:35575 1 1q42.12 ribosomal protein L34 pseudogene 7 pseudo RPL34P7 ribosomal protein L34 pseudogene 7 O - 20121230 -9606 100127999 RPL18AP11 - RPL18A_5_961 HGNC:36661 9 9p24.1 ribosomal protein L18a pseudogene 11 pseudo RPL18AP11 ribosomal protein L18a pseudogene 11 O - 20121230 -9606 100128001 LOC100128001 - - - 11 11p15.5 uncharacterized LOC100128001 protein-coding - - - - 20120511 -9606 100128002 LOC100128002 - - - 12 12q24.33 uncharacterized LOC100128002 unknown - - - - 20121230 -9606 100128004 RPL32P21 - RPL32_13_977 HGNC:36363 9 9p13.2 ribosomal protein L32 pseudogene 21 pseudo RPL32P21 ribosomal protein L32 pseudogene 21 O - 20121230 -9606 100128006 LOC100128006 - - - 17 17p12 uncharacterized LOC100128006 unknown - - - - 20120511 -9606 100128007 LOC100128007 - - - 17 17p13.1 Spi-C transcription factor (Spi-1/PU.1 related) pseudogene pseudo - - - - 20121230 -9606 100128010 LOC100128010 - - - 17 17q21.32 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100128011 FAR1P1 - - HGNC:39675 13 13q31.3 fatty acyl CoA reductase 1 pseudogene 1 pseudo FAR1P1 fatty acyl CoA reductase 1 pseudogene 1 O - 20121230 -9606 100128012 ISCA1P4 - - HGNC:38025 15 15q15.1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 4 pseudo ISCA1P4 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 4 O - 20121230 -9606 100128015 HMGN1P26 - - HGNC:39370 15 15q22.2 high mobility group nucleosome binding domain 1 pseudogene 26 pseudo HMGN1P26 high mobility group nucleosome binding domain 1 pseudogene 26 O - 20121230 -9606 100128016 WHSC1L2P - HsT36289|NSD4P|WHSC1L1P HGNC:14647 17 17q21.31 Wolf-Hirschhorn syndrome candidate 1-like 2, pseudogene pseudo WHSC1L2P Wolf-Hirschhorn syndrome candidate 1-like 2, pseudogene O - 20121230 -9606 100128017 TULP3P1 RP11-65L19.2 - HGNC:39262 13 13q32.1 tubby like protein 3 pseudogene 1 pseudo TULP3P1 tubby like protein 3 pseudogene 1 O - 20121230 -9606 100128019 LOC100128019 - - - 7 7p11.2 uncharacterized LOC100128019 unknown - - - - 20120511 -9606 100128020 ACTR3P3 - - HGNC:38679 3 3q12.2 ARP3 actin-related protein 3 homolog (yeast) pseudogene 3 pseudo ACTR3P3 ARP3 actin-related protein 3 homolog (yeast) pseudogene 3 O - 20121230 -9606 100128022 LOC100128022 - - - 18 18q21.32 pleckstrin homology domain containing, family B (evectins) member 2 pseudogene pseudo - - - - 20121230 -9606 100128023 DPPA2P3 - - HGNC:44628 3 3q29 developmental pluripotency associated 2 pseudogene 3 pseudo DPPA2P3 developmental pluripotency associated 2 pseudogene 3 O - 20121230 -9606 100128025 WWTR1-AS1 - - HGNC:41035 3 3q25.1 WWTR1 antisense RNA 1 miscRNA WWTR1-AS1 WWTR1 antisense RNA 1 O - 20121230 -9606 100128027 LOC100128027 - - - 2 2p16.1 cysteine-rich, DPF motif domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100128028 LOC100128028 - - - 20 20q13.12 uncharacterized LOC100128028 unknown - - - - 20121230 -9606 100128029 LOC100128029 - - - 2 2p16.3 chromosome 16 open reading frame 88 pseudogene pseudo - - - - 20121230 -9606 100128030 RPL10P11 - RPL10_4_817 HGNC:36565 7 7q21.11 ribosomal protein L10 pseudogene 11 pseudo RPL10P11 ribosomal protein L10 pseudogene 11 O - 20121230 -9606 100128033 LOC100128033 - - - 20 20q11.22 phosphatidylinositol glycan anchor biosynthesis, class P pseudogene pseudo - - - - 20121230 -9606 100128035 LOC100128035 UNQ5840 - - 3 3q13.2 VGSA5840 unknown - - - - 20120710 -9606 100128036 KLF7P1 - KLF7P HGNC:17207 3 3q26.2 kruppel-like factor 7 pseudogene 1 pseudo KLF7P1 kruppel-like factor 7 pseudogene 1 O - 20121230 -9606 100128041 LOC100128041 - - - 10 10q21.3 keratin 19 pseudogene pseudo - - - - 20121230 -9606 100128042 BRD7P6 - - HGNC:37632 2 2p13.3 bromodomain containing 7 pseudogene 6 pseudo BRD7P6 bromodomain containing 7 pseudogene 6 O - 20121230 -9606 100128043 LOC100128043 - - - 10 10q23.32 Fas associated factor family member 2 pseudogene pseudo - - - - 20121230 -9606 100128044 HNRNPA1P11 - - HGNC:39129 18 18q22.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene 11 pseudo HNRNPA1P11 heterogeneous nuclear ribonucleoprotein A1 pseudogene 11 O - 20121230 -9606 100128045 LOC100128045 - - - 3 3p12.3 uncharacterized LOC100128045 pseudo - - - - 20121209 -9606 100128046 PP13439 - - - 3 3q26.31 uncharacterized LOC100128046 unknown - - - - 20121221 -9606 100128048 LOC100128048 - - - 2 2p21 cysteine and histidine-rich domain (CHORD) containing 1 pseudogene pseudo - - - - 20121230 -9606 100128050 LOC100128050 - - - 4 4q31.3 WD repeat domain 77 pseudogene pseudo - - - - 20121230 -9606 100128052 LOC100128052 - - - 7 7q33 protein phosphatase 2, regulatory subunit B', gamma pseudogene pseudo - - - - 20121230 -9606 100128054 LOC100128054 - - - 10 10q23.33 uncharacterized LOC100128054 miscRNA - - - - 20121230 -9606 100128055 SMARCA5-AS1 - - HGNC:39982 4 4q31.21 SMARCA5 antisense RNA 1 unknown SMARCA5-AS1 SMARCA5 antisense RNA 1 O - 20121230 -9606 100128056 LOC100128056 - - - 7 7q31.1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 pseudogene pseudo - - - - 20121230 -9606 100128057 NIPA2P3 - - HGNC:42043 21 21q21.1 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 3 pseudo NIPA2P3 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 3 O - 20121230 -9606 100128059 LOC100128059 - - - 5 5q35.1 uncharacterized LOC100128059 unknown - - - - 20121230 -9606 100128060 RPS7P10 - - HGNC:39903 13 13q12.11 ribosomal protein S7 pseudogene 10 pseudo RPS7P10 ribosomal protein S7 pseudogene 10 O - 20121230 -9606 100128061 LOC100128061 - - - 2 2q24.1 heterogeneous nuclear ribonucleoprotein D-like pseudogene pseudo - - - - 20121230 -9606 100128062 SLC2A3P1 - GLUT3P1|GLUT6|SLC2A3P HGNC:11008 5 5q34 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 1 pseudo SLC2A3P1 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 1 O - 20121230 -9606 100128063 LOC100128063 - - - 5 5q35.2 uncharacterized LOC100128063 unknown - - - - 20120508 -9606 100128071 FAM229A - - HGNC:44652|Ensembl:ENSG00000225828|Vega:OTTHUMG00000007587 1 1p35.1 family with sequence similarity 229, member A protein-coding FAM229A family with sequence similarity 229, member A O uncharacterized protein LOC100128071 20121230 -9606 100128072 RPL36AP27 - RPL36A_9_808 HGNC:35650 7 7p13 ribosomal protein L36a pseudogene 27 pseudo RPL36AP27 ribosomal protein L36a pseudogene 27 O - 20121230 -9606 100128075 LOC100128075 - - - 14 14q31.3 uncharacterized LOC100128075 unknown - - - - 20121230 -9606 100128076 LOC100128076 - - - 9 9q22.31 protein tyrosine phosphatase pseudogene pseudo - - - - 20121230 -9606 100128077 LOC100128077 - - - 9 9q34.11 uncharacterized LOC100128077 unknown - - - - 20121230 -9606 100128078 LOC100128078 - - - 20 20p11.21 NIPA-like domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100128079 LOC100128079 - - - 16 16p11.2 uncharacterized LOC100128079 unknown - - - - 20120511 -9606 100128081 JAZF1-AS1 - - HGNC:41218 7 7p15.1 JAZF1 antisense RNA 1 miscRNA JAZF1-AS1 JAZF1 antisense RNA 1 O - 20121230 -9606 100128083 RPS15AP40 - RPS15A_26_1770 HGNC:36041 X Xp21.1 ribosomal protein S15a pseudogene 40 pseudo RPS15AP40 ribosomal protein S15a pseudogene 40 O - 20121230 -9606 100128086 LOC100128086 - - - 9 9q31.2 APAF1 interacting protein pseudogene pseudo - - - - 20121230 -9606 100128088 LOC100128088 - - - 11 11q22.2 matrix metallopeptidase 1-like protein-coding - - - - 20121102 -9606 100128091 LOC100128091 - - - 1 1p34.2 coiled-coil domain containing 25 pseudogene pseudo - - - - 20121230 -9606 100128092 PRDX3P2 - - HGNC:39265 1 1p35.3 peroxiredoxin 3 pseudogene 2 pseudo PRDX3P2 peroxiredoxin 3 pseudogene 2 O - 20121230 -9606 100128093 LOC100128093 - - - 1 1p34.3 magnesium transporter 1 pseudogene pseudo - - - - 20121230 -9606 100128094 LPCAT2BP - - HGNC:38003 1 1p22.1 lysophosphatidylcholine acyltransferase 2b, pseudogene pseudo LPCAT2BP lysophosphatidylcholine acyltransferase 2b, pseudogene O - 20121230 -9606 100128098 ST8SIA6-AS1 - - HGNC:44880 10 10p12.33 ST8SIA6 antisense RNA 1 miscRNA ST8SIA6-AS1 ST8SIA6 antisense RNA 1 O - 20121230 -9606 100128102 LOC100128102 - - - 11 11q21 prohibitin-like pseudo - - - - 20121209 -9606 100128103 LOC100128103 - - - 16 16p11.1 angiogenic factor with G patch and FHA domains 1 pseudogene pseudo - - - - 20121230 -9606 100128105 LOC100128105 - - - 17 17q25.3 uncharacterized LOC100128105 unknown - - - - 20121230 -9606 100128107 LOC100128107 - - - 19 19q13.32 uncharacterized LOC100128107 protein-coding - - - - 20121018 -9606 100128108 LOC100128108 - - - 15 15q26.3 uncharacterized LOC100128108 miscRNA - - - - 20121209 -9606 100128109 LOC100128109 - - - 12 12p12.3 MEF2B neighbor pseudogene pseudo - - - - 20121230 -9606 100128110 CHCHD2P3 - - HGNC:39587 19 19q13.11 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 3 pseudo CHCHD2P3 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 3 O - 20121230 -9606 100128115 RPL26P35 - RPL26_15_1614 HGNC:36278 18 18q23 ribosomal protein L26 pseudogene 35 pseudo RPL26P35 ribosomal protein L26 pseudogene 35 O - 20121230 -9606 100128117 RPL17P15 - RPL17_5_269 HGNC:36889 2 2q14.2 ribosomal protein L17 pseudogene 15 pseudo RPL17P15 ribosomal protein L17 pseudogene 15 O - 20121230 -9606 100128118 LOC100128118 - - - 4 4q34.3 cyclin H pseudogene pseudo - - - - 20121230 -9606 100128119 SLC25A51P3 - MCART5P HGNC:31051 8 8q21.13 solute carrier family 25, member 51 pseudogene 3 pseudo SLC25A51P3 solute carrier family 25, member 51 pseudogene 3 O - 20121230 -9606 100128121 LOC100128121 - - - 5 5q31.3 60S ribosomal protein L9-like pseudo - - - - 20121209 -9606 100128122 LOC100128122 - - - X Xq24 Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1 pseudogene pseudo - - - - 20121230 -9606 100128124 HGC6.3 - - - 6 6q27 uncharacterized LOC100128124 protein-coding - - - uncharacterized protein LOC100128124 20121230 -9606 100128126 STAU2-AS1 - - HGNC:44101 8 8q21.11 STAU2 antisense RNA 1 miscRNA STAU2-AS1 STAU2 antisense RNA 1 O - 20121230 -9606 100128127 LOC100128127 - - - 10 10q26.3 uncharacterized LOC100128127 pseudo - - - - 20121209 -9606 100128130 LOC100128130 - - - 2 2q13 uncharacterized LOC100128130 unknown - - - - 20121230 -9606 100128131 LOC100128131 - - - 2 2q12.1 uncharacterized LOC100128131 miscRNA - - - - 20121209 -9606 100128132 TMCC1P1 - TMCC1P HGNC:31901 8 8q23.1 transmembrane and coiled-coil domain family 1 pseudogene 1 pseudo TMCC1P1 transmembrane and coiled-coil domain family 1 pseudogene 1 O - 20121230 -9606 100128135 GVINP2 - - HGNC:38876 11 11p15.4 GTPase, very large interferon inducible pseudogene 2 pseudo GVINP2 GTPase, very large interferon inducible pseudogene 2 O - 20121230 -9606 100128136 LOC100128136 - - - 9 9p13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa pseudogene pseudo - - - - 20121230 -9606 100128139 LOC100128139 - - - 19 19p12 uncharacterized LOC100128139 miscRNA - - - - 20121209 -9606 100128140 RPS4XP17 - RPS4P17|RPS4X_7_1505 HGNC:36789 17 17p13.3 ribosomal protein S4X pseudogene 17 pseudo RPS4XP17 ribosomal protein S4X pseudogene 17 O - 20121230 -9606 100128144 LOC100128144 - - - 19 19p13.3 ribosomal protein L32 pseudogene pseudo - - - - 20121230 -9606 100128145 CLCP2 RP11-569D9.3 LGALS10P1 HGNC:42536 13 13q34 Charcot-Leyden crystal protein pseudogene 2 pseudo CLCP2 Charcot-Leyden crystal protein pseudogene 2 O - 20121230 -9606 100128154 LOC100128154 - - - 5 5q11.2 KIAA1919 pseudogene pseudo - - - - 20121230 -9606 100128159 ATF1P1 - - HGNC:37691 6 6q16.1 activating transcription factor 1 pseudogene 1 pseudo ATF1P1 activating transcription factor 1 pseudogene 1 O - 20121230 -9606 100128160 LOC100128160 - - - 3 3p13 uncharacterized LOC100128160 protein-coding - - - - 20120511 -9606 100128162 RPS6P7 - RPS6_3_716 HGNC:36092 6 6q14.1 ribosomal protein S6 pseudogene 7 pseudo RPS6P7 ribosomal protein S6 pseudogene 7 O - 20121230 -9606 100128164 LOC100128164 - - - 3 3q26.2 four and a half LIM domains 1 pseudogene pseudo - - - - 20121230 -9606 100128168 RPS26P39 - RPS26_21_1107 HGNC:36958 10 10q26.13 ribosomal protein S26 pseudogene 39 pseudo RPS26P39 ribosomal protein S26 pseudogene 39 O - 20121230 -9606 100128170 LOC100128170 - - - 20 20q13.12 uncharacterized LOC100128170 protein-coding - - - - 20120511 -9606 100128171 LOC100128171 - - - X Xq12 mitochondrial fission regulator 1 pseudogene pseudo - - - - 20121230 -9606 100128172 LOC100128172 - - - 20 20q13.33 uncharacterized LOC100128172 protein-coding - - - - 20120511 -9606 100128174 LOC100128174 - - - 8 8p23.1 defensin, beta 131 pseudogene pseudo - - - - 20121230 -9606 100128175 LOC100128175 - - - 3 3q13.31 uncharacterized LOC100128175 unknown - - - - 20120710 -9606 100128176 LOC100128176 - - - 6 6q25.1 uncharacterized LOC100128176 miscRNA - - - - 20121230 -9606 100128177 NDUFS5P5 - - HGNC:44043 4 4q26 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 5 pseudo NDUFS5P5 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 5 O - 20121230 -9606 100128178 LOC100128178 - - - 1 1q24.3 uncharacterized LOC100128178 unknown - - - - 20120909 -9606 100128179 LOC100128179 - - - 3 3q13.11 RAP1B, member of RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100128180 LOC100128180 - - - 4 4q24 PRO2116 unknown - - - - 20121006 -9606 100128181 FMO10P - - HGNC:32211 1 1q24.1 flavin containing monooxygenase 10, pseudogene pseudo FMO10P flavin containing monooxygenase 10, pseudogene O - 20121230 -9606 100128183 PABPC1P7 - - HGNC:37987 4 4q24 poly(A) binding protein, cytoplasmic 1 pseudogene 7 pseudo PABPC1P7 poly(A) binding protein, cytoplasmic 1 pseudogene 7 O - 20121230 -9606 100128184 LOC100128184 - - - 20 20q13.33 uncharacterized LOC100128184 protein-coding - - - - 20120511 -9606 100128185 LOC100128185 - - - 2 2p25.3 PNAS-19 unknown - - - - 20120710 -9606 100128190 SLC9B1P1 - NHEDC1P1 HGNC:37492 Y Yq11.21 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 1 pseudo SLC9B1P1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 1 O - 20121230 -9606 100128191 TMPO-AS1 - - HGNC:44158 12 12q23.1 TMPO antisense RNA 1 miscRNA TMPO-AS1 TMPO antisense RNA 1 O - 20121230 -9606 100128198 LOC100128198 - - - 21 21q22.11 uncharacterized LOC100128198 protein-coding - - - - 20120508 -9606 100128202 FLJ25694 - - - 13 13q21.31 uncharacterized protein FLJ25694 other - - - - 20121102 -9606 100128203 ENSAP3 - - HGNC:37946 2 2q35 endosulfine alpha pseudogene 3 pseudo ENSAP3 endosulfine alpha pseudogene 3 O - 20121230 -9606 100128210 LOC100128210 - - - 11 11q12.1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) pseudogene pseudo - - - - 20121230 -9606 100128217 LOC100128217 - - - 7 7p21.2 general transcription factor IIIA pseudogene pseudo - - - - 20121230 -9606 100128218 PSMC6P3 - - HGNC:34012 5 5p13.2 proteasome 26S subunit, ATPase, 6 pseudogene 3 pseudo PSMC6P3 proteasome 26S subunit, ATPase, 6 pseudogene 3 O - 20121230 -9606 100128219 LOC100128219 - - - 18 18p11.23 uncharacterized LOC100128219 unknown - - - - 20120511 -9606 100128220 EDDM3DP - - HGNC:37707 14 14q11.2 epididymal protein 3D, pseudogene pseudo EDDM3DP epididymal protein 3D, pseudogene O - 20121230 -9606 100128226 LOC100128226 - - - 11 11q23.1 hypothetic protein unknown - - - - 20120511 -9606 100128227 HMGB1P20 - - HGNC:39103 6 6p12.1 high mobility group box 1 pseudogene 20 pseudo HMGB1P20 high mobility group box 1 pseudogene 20 O - 20121230 -9606 100128233 LOC100128233 - - - 14 14q23.3 uncharacterized LOC100128233 miscRNA - - - - 20120710 -9606 100128236 GAFA3 - - - 4 4p14 FGF-2 activity-associated protein 3 unknown - - - - 20120710 -9606 100128237 YRDCP2 - - HGNC:39920 9 9q22.33 yrdC domain containing (E. coli) pseudogene 2 pseudo YRDCP2 yrdC domain containing (E. coli) pseudogene 2 O - 20121230 -9606 100128238 LOC100128238 - - - 18 18p11.22 KIAA0895-like pseudogene pseudo - - - - 20121230 -9606 100128239 LOC100128239 - - - 11 11q25 uncharacterized LOC100128239 miscRNA - - - - 20121230 -9606 100128240 CD83P1 - CD83P|HB15p|b34I8.3 HGNC:13946 6 6p22.1 CD83 molecule pseudogene 1 pseudo CD83P1 CD83 molecule pseudogene 1 O - 20121230 -9606 100128242 LOC100128242 - - - 11 11q24.1 uncharacterized LOC100128242 unknown - - - - 20121230 -9606 100128248 LOC100128248 - - - 12 12q12 mesoderm development candidate 2 pseudogene pseudo - - - - 20121230 -9606 100128250 RPL31P55 - RPL31_31_1463 HGNC:36982 15 15q26.2 ribosomal protein L31 pseudogene 55 pseudo RPL31P55 ribosomal protein L31 pseudogene 55 O - 20121230 -9606 100128252 LOC100128252 - - - 19 19q13.43 uncharacterized LOC100128252 miscRNA - - - - 20121230 -9606 100128253 LOC100128253 - - - 12 12p13.32 uncharacterized LOC100128253 unknown - - - - 20121102 -9606 100128254 FAM90A28P - - HGNC:43747 19 19q13.42 family with sequence similarity 90, member A28, pseudogene pseudo FAM90A28P family with sequence similarity 90, member A28, pseudogene O - 20121230 -9606 100128258 RPS18P3 - RPS18_2_171 HGNC:36198 1 1q42.13 ribosomal protein S18 pseudogene 3 pseudo RPS18P3 ribosomal protein S18 pseudogene 3 O - 20121230 -9606 100128260 WASIR1 hCG_1742852 NCRNA00286B HGNC:38513 X|Y Xq28; Yq12 WASH and IL9R antisense RNA 1 miscRNA WASIR1 WASH and IL9R antisense RNA 1 O - 20121021 -9606 100128262 LOC100128262 - - - 3 3q29 uncharacterized LOC100128262 unknown - - - - 20121230 -9606 100128264 LOC100128264 - - - 7 7q36.2 uncharacterized LOC100128264 miscRNA - - - - 20121230 -9606 100128265 LOC100128265 - - - X Xq27.3 uncharacterized LOC100128265 protein-coding - - - - 20121221 -9606 100128266 RANP6 - - HGNC:39861 4 4q34.1 RAN, member RAS oncogene family pseudogene 6 pseudo RANP6 RAN, member RAS oncogene family pseudogene 6 O - 20121230 -9606 100128268 LOC100128268 - - - X Xq25 actin-related protein T1 pseudogene pseudo - - - - 20121230 -9606 100128274 LOC100128274 - - - 9 9p21.1 putative p150 protein-coding - - - uncharacterized protein LOC100128274 20120318 -9606 100128275 SYF2P2 - - HGNC:38139 9 9p13.3 SYF2 homolog, RNA splicing factor (S. cerevisiae) pseudogene 2 pseudo SYF2P2 SYF2 homolog, RNA splicing factor (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100128276 LOC100128276 - - - 12 12q24.33 uncharacterized LOC100128276 unknown - - - - 20121230 -9606 100128277 RPL35AP20 - RPL35A_9_959 HGNC:36053 9 9p24.1 ribosomal protein L35a pseudogene 20 pseudo RPL35AP20 ribosomal protein L35a pseudogene 20 O - 20121230 -9606 100128281 LOC100128281 - - - 17 17p13.1 uncharacterized LOC100128281 unknown - - - - 20120511 -9606 100128284 LOC100128284 - - - 17 17p13.2 nipsnap homolog 1 (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100128285 DNM1P35 hCG_1739398 DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88 HGNC:35182 15 15q24.2 DNM1 pseudogene 35 pseudo DNM1P35 DNM1 pseudogene 35 O - 20121230 -9606 100128288 LOC100128288 - - - 17 17p13.1 uncharacterized LOC100128288 miscRNA - - - - 20121230 -9606 100128292 LOC100128292 - - - 10 10q22.3 uncharacterized LOC100128292 miscRNA - - - - 20121230 -9606 100128293 LOC100128293 - - - 6 6q12 histone-lysine N-methyltransferase SUV39H2-like pseudo - - - - 20121230 -9606 100128297 LOC100128297 - - - 4 4q21.1 serine/arginine-rich splicing factor 10 pseudogene pseudo - - - - 20121230 -9606 100128298 OCR1 - - - 1 1q32.1 ovarian cancer-related protein 1 unknown - - - - 20120511 -9606 100128299 SOCS5P2 - - HGNC:44598 9 9q34.3 suppressor of cytokine signaling 5 pseudogene 2 pseudo SOCS5P2 suppressor of cytokine signaling 5 pseudogene 2 O - 20121230 -9606 100128302 LOC100128302 - - - 10 10q23.32 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa pseudogene pseudo - - - - 20121230 -9606 100128305 RPS13P1 - RPS13_1_111 HGNC:36309 1 1q24.1 ribosomal protein S13 pseudogene 1 pseudo RPS13P1 ribosomal protein S13 pseudogene 1 O - 20121230 -9606 100128307 LOC100128307 - - - 7 7q31.1 phosphatidylinositol glycan anchor biosynthesis, class C pseudogene pseudo - - - - 20121230 -9606 100128310 LOC100128310 RP11-429E11.3 - - 20 20q13.33 uncharacterized LOC100128310 unknown - - - - 20121230 -9606 100128312 SLC25A6P6 - - HGNC:43855 6 6q13 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 6 pseudo SLC25A6P6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 6 O - 20121230 -9606 100128317 LOC100128317 - - - 7 7q21.11 uncharacterized LOC100128317 protein-coding - - - - 20120511 -9606 100128318 RPL26P17 - RPL26_8_492 HGNC:35662 4 4q21.1 ribosomal protein L26 pseudogene 17 pseudo RPL26P17 ribosomal protein L26 pseudogene 17 O - 20121230 -9606 100128320 LOC100128320 - - - 10 10q24.1 uncharacterized LOC100128320 protein-coding - - - - 20120511 -9606 100128324 EXOGP1 - - HGNC:44547 18 18q11.1 endo/exonuclease (5'-3'), endonuclease G-like pseudogene 1 pseudo EXOGP1 endo/exonuclease (5'-3'), endonuclease G-like pseudogene 1 O - 20121230 -9606 100128325 LOC100128325 - - - 7 7q32.2 uncharacterized LOC100128325 unknown - - - - 20120511 -9606 100128326 LOC100128326 - - - 7 7p11.2 putative uncharacterized protein FLJ92257-like protein-coding - - - - 20121209 -9606 100128327 BET3L RP11-259P20.2 TRAPPC3L|bA259P20.2 HGNC:21090|MIM:614137|Ensembl:ENSG00000173626|Vega:OTTHUMG00000015440 6 6q22.1 BET3 like (S. cerevisiae) protein-coding BET3L BET3 like (S. cerevisiae) O BET3-like protein|TRAPPC3-like protein|trafficking protein particle complex subunit 3-like protein 20121230 -9606 100128329 PRO2958 - - - 2 2p24.3 uncharacterized LOC100128329 unknown - - - - 20121006 -9606 100128333 LOC100128333 - - - 2 2p14 uncharacterized LOC100128333 unknown - - - - 20121018 -9606 100128334 LOC100128334 - - - 7 7q22.1 gap junction protein, gamma 3, 30.2kDa pseudogene pseudo - - - - 20121230 -9606 100128335 LOC100128335 - - - 12 12q21.31 WD repeat domain 12 pseudogene pseudo - - - - 20121230 -9606 100128337 IPO7P2 RP11-309I15.2 - HGNC:39838 13 13q12.12 importin 7 pseudogene 2 pseudo IPO7P2 importin 7 pseudogene 2 O - 20121230 -9606 100128338 LOC100128338 hCG_1995004 - - 8 8q24.3 uncharacterized LOC100128338 miscRNA - - - - 20121230 -9606 100128339 BCAS2P3 - - HGNC:39596 13 13q31.1 breast carcinoma amplified sequence 2 pseudogene 3 pseudo BCAS2P3 breast carcinoma amplified sequence 2 pseudogene 3 O - 20121230 -9606 100128340 LOC100128340 - - - 5 5q35.3 uncharacterized LOC100128340 unknown - - - - 20121230 -9606 100128341 RBMX2P1 - - HGNC:39923 21 21q11.2 RNA binding motif protein, X-linked 2 pseudogene 1 pseudo RBMX2P1 RNA binding motif protein, X-linked 2 pseudogene 1 O - 20121230 -9606 100128343 LOC100128343 - - - 14 14q32.33 uncharacterized LOC100128343 unknown - - - - 20121230 -9606 100128345 LOC100128345 - - - X Xp21.1 nuclear transcription factor Y, gamma pseudogene pseudo - - - - 20121230 -9606 100128347 RPL15P15 - RPL15_4_1179 HGNC:36780 11 11q23.3 ribosomal protein L15 pseudogene 15 pseudo RPL15P15 ribosomal protein L15 pseudogene 15 O - 20121230 -9606 100128348 LOC100128348 - - - 16 16p11.2 uncharacterized LOC100128348 protein-coding - - - - 20120511 -9606 100128351 RPL21P52 - RPL21_16_474 HGNC:36621 4 4p12 ribosomal protein L21 pseudogene 52 pseudo RPL21P52 ribosomal protein L21 pseudogene 52 O - 20121230 -9606 100128355 LOC100128355 - - - X Xp22.33 ribosomal protein S27a pseudogene pseudo - - - - 20121230 -9606 100128356 LOC100128356 - - - 10 10p15.1 protein transactivated by hepatitis B virus E antigen unknown - - - - 20121230 -9606 100128358 RPS6P24 - RPS6_12_1345 HGNC:36070 14 14q12 ribosomal protein S6 pseudogene 24 pseudo RPS6P24 ribosomal protein S6 pseudogene 24 O - 20121230 -9606 100128360 LOC100128360 - - - 18 18p11.32 axin interactor, dorsalization associated pseudogene pseudo - - - - 20121230 -9606 100128361 LOC100128361 - - - 9 9q22.31 uncharacterized LOC100128361 miscRNA - - - - 20121230 -9606 100128362 LOC100128362 - - - 1 1p34.2 protein phosphatase 2, catalytic subunit, alpha isozyme pseudogene pseudo - - - - 20121230 -9606 100128364 LOC100128364 - - - 7 7p13 uncharacterized LOC100128364 unknown - - - - 20121230 -9606 100128365 LOC100128365 - - - 6 6p22.3 interferon stimulated exonuclease gene 20kDa-like 2 pseudogene pseudo - - - - 20121230 -9606 100128366 LOC100128366 - - - 14 14q32.33 uncharacterized LOC100128366 pseudo - - - - 20121209 -9606 100128368 VN1R21P - - HGNC:37336 3 3p25.1 vomeronasal 1 receptor 21 pseudogene pseudo VN1R21P vomeronasal 1 receptor 21 pseudogene O - 20121230 -9606 100128371 LOC100128371 - - - 16 16p11.2 uncharacterized LOC100128371 unknown - - - - 20121230 -9606 100128372 HMGN2P28 - - HGNC:39395 6 6p25.2 high mobility group nucleosomal binding domain 2 pseudogene 28 pseudo HMGN2P28 high mobility group nucleosomal binding domain 2 pseudogene 28 O - 20121230 -9606 100128373 LOC100128373 - - - 14 14q32.31 AKT interacting protein pseudogene pseudo - - - - 20121230 -9606 100128374 LOC100128374 - - - 7 7p22.3 uncharacterized LOC100128374 unknown - - - - 20121230 -9606 100128377 RPS29P7 - RPS29_2_60 HGNC:36594 1 1p31.3 ribosomal protein S29 pseudogene 7 pseudo RPS29P7 ribosomal protein S29 pseudogene 7 O - 20121230 -9606 100128378 LINC00696 - C3orf74 HGNC:34426 3 3p21.2 long intergenic non-protein coding RNA 696 miscRNA LINC00696 long intergenic non-protein coding RNA 696 O - 20121230 -9606 100128379 LOC100128379 - - - 6 6p21.2 TRK-fused gene pseudogene pseudo - - - - 20121230 -9606 100128384 VN1R65P - - HGNC:37385 16 16p11.2 vomeronasal 1 receptor 65 pseudogene pseudo VN1R65P vomeronasal 1 receptor 65 pseudogene O - 20121230 -9606 100128385 FAM225B - C9orf110|LINC00256B|NCRNA00256B HGNC:21865 9 9q32 family with sequence similarity 225, member B (non-protein coding) miscRNA FAM225B family with sequence similarity 225, member B (non-protein coding) O - 20121230 -9606 100128386 LOC100128386 - - - 11 11q22.1 uncharacterized LOC100128386 unknown - - - - 20120511 -9606 100128390 CALM2P1 - - HGNC:1446 17 17q24.3 calmodulin 2 pseudogene 1 pseudo CALM2P1 calmodulin 2 pseudogene 1 O - 20121230 -9606 100128393 RPL35AP36 - RPL35A_20_1756 HGNC:36103 22 22q13.31 ribosomal protein L35a pseudogene 36 pseudo RPL35AP36 ribosomal protein L35a pseudogene 36 O - 20121230 -9606 100128397 MKI67IPP5 - - HGNC:44953 15 15q26.1 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 5 pseudo MKI67IPP5 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 5 O - 20121230 -9606 100128398 LOC100128398 - - - 19 19q13.43 uncharacterized LOC100128398 miscRNA - - - - 20121230 -9606 100128400 LOC100128400 - - - 22 22q13.1 uncharacterized LOC100128400 unknown - - - - 20121209 -9606 100128401 LOC100128401 - - - 22 22q12.1 uncharacterized LOC100128401 unknown - - - - 20120511 -9606 100128402 LOC100128402 - - - 12 12p13.31 uncharacterized LOC100128402 protein-coding - - - - 20120511 -9606 100128406 AZFP - - - 2 2q21.2 AML-associated zinc finger protein unknown - - - - 20121230 -9606 100128407 LOC100128407 - - - 5 5q23.1 N-acetylneuraminic acid phosphatase pseudogene pseudo - - - - 20121230 -9606 100128408 RPL22P10 - RPL22_3_253 HGNC:36559 2 2q12.2 ribosomal protein L22 pseudogene 10 pseudo RPL22P10 ribosomal protein L22 pseudogene 10 O - 20121230 -9606 100128410 LOC100128410 - - - X Xq25 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100128412 LOC100128412 - - - 8 8q21.3 Vps20-associated 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100128413 LOC100128413 - - - 2 2q13 X-linked inhibitor of apoptosis pseudogene pseudo - - - - 20121230 -9606 100128416 LOC100128416 - - - X Xq26.3 RAB28, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100128420 LOC100128420 RP3-527F8.2 - Vega:OTTHUMG00000022511 X Xq26.3 uncharacterized LOC100128420 miscRNA - - - - 20121230 -9606 100128423 RPS24P14 - RPS24_4_1115 HGNC:35744 11 11p15.4 ribosomal protein S24 pseudogene 14 pseudo RPS24P14 ribosomal protein S24 pseudogene 14 O - 20121230 -9606 100128427 LOC100128427 - - - 11 11p11.12 upstream binding transcription factor, RNA polymerase I pseudogene pseudo - - - - 20121230 -9606 100128428 LOC100128428 - - - 19 19p13.2 UBX domain protein 2A pseudogene pseudo - - - - 20121230 -9606 100128429 LOC100128429 - - - 19 19p13.11 uncharacterized LOC100128429 protein-coding - - - - 20120511 -9606 100128430 LOC100128430 - - - 13 13q34 uncharacterized LOC100128430 protein-coding - - - uncharacterized protein LOC100128430 20120511 -9606 100128431 GEMIN8P1 - FAM51A2P|GEMIN8P HGNC:31818 15 15q23 gem (nuclear organelle) associated protein 8 pseudogene 1 pseudo GEMIN8P1 gem (nuclear organelle) associated protein 8 pseudogene 1 O - 20121230 -9606 100128437 LOC100128437 - - - 15 15q22.2 uncharacterized LOC100128437 protein-coding - - - - 20120511 -9606 100128441 LOC100128441 - - - 8 8p12 general transcription factor IIA, 2, 12kDa pseudogene pseudo - - - - 20121230 -9606 100128442 LOC100128442 - - - X Xp11.3 serine/arginine-rich splicing factor 6 pseudogene pseudo - - - - 20121230 -9606 100128448 UQCRHP4 - - HGNC:38047 3 3p13 ubiquinol-cytochrome c reductase hinge protein pseudogene 4 pseudo UQCRHP4 ubiquinol-cytochrome c reductase hinge protein pseudogene 4 O - 20121230 -9606 100128449 IL9RP1 - - HGNC:6031 9 9q34.3 interleukin 9 receptor pseudogene 1 pseudo IL9RP1 interleukin 9 receptor pseudogene 1 O - 20121230 -9606 100128450 RPS6P8 - RPS6_3_713 HGNC:36999 6 6q13 ribosomal protein S6 pseudogene 8 pseudo RPS6P8 ribosomal protein S6 pseudogene 8 O - 20121230 -9606 100128454 LOC100128454 - - - X Xp11.22 39S ribosomal protein L32, mitochondrial-like pseudo - - - - 20121209 -9606 100128456 CCNB1IP1P3 - - HGNC:37695 X Xq21.33 cyclin B1 interacting protein 1 pseudogene 3 pseudo CCNB1IP1P3 cyclin B1 interacting protein 1 pseudogene 3 O - 20121230 -9606 100128457 LOC100128457 - - - 4 4q31.1 uncharacterized LOC100128457 unknown - - - uncharacterized protein LOC100128457 20120511 -9606 100128459 CCNJP1 - CCNJP HGNC:22512 7 7p11.2 cyclin J pseudogene 1 pseudo CCNJP1 cyclin J pseudogene 1 O - 20121230 -9606 100128462 RPF2P2 - - HGNC:44015 4 4q26 ribosome production factor 2 homolog (S. cerevisiae) pseudogene 2 pseudo RPF2P2 ribosome production factor 2 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100128464 LOC100128464 - - - 7 7q21.12 PET117 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100128465 IFIT6P - - HGNC:38020 10 10q23.31 interferon-induced protein with tetratricopeptide repeats 6, pseudogene pseudo IFIT6P interferon-induced protein with tetratricopeptide repeats 6, pseudogene O - 20121230 -9606 100128467 LOC100128467 - - - X Xq12 nuclear distribution protein nudE-like 1-like pseudo - - - - 20121230 -9606 100128469 LOC100128469 - - - 3 3q25.1 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100128477 LOC100128477 - - - 6 6q21 uncharacterized LOC100128477 unknown - - - - 20121018 -9606 100128482 LOC100128482 - - - 5 5q35.1 uncharacterized LOC100128482 unknown - - - - 20121230 -9606 100128483 LOC100128483 - - - 2 2q34 translationally-controlled tumor protein-like pseudo - - - - 20121209 -9606 100128493 UBE2V2P1 - - HGNC:44885 10 10p12.31 ubiquitin-conjugating enzyme E2 variant 2 pseudogene 1 pseudo UBE2V2P1 ubiquitin-conjugating enzyme E2 variant 2 pseudogene 1 O - 20121230 -9606 100128494 LOC100128494 - - - 11 11q13.4 uncharacterized LOC100128494 miscRNA - - - - 20120511 -9606 100128496 C20orf78 RP5-1068E13.5 dJ1068E13.1 HGNC:16210|Ensembl:ENSG00000149443|Vega:OTTHUMG00000031982 20 20p11.23 chromosome 20 open reading frame 78 protein-coding C20orf78 chromosome 20 open reading frame 78 O putative uncharacterized protein C20orf78 20121230 -9606 100128497 LOC100128497 - - - 16 16q23.1 mitotic spindle assembly checkpoint protein MAD2A-like pseudo - - - - 20121209 -9606 100128498 LOC100128498 - - - 16 16q22.1 uncharacterized LOC100128498 protein-coding - - - - 20121018 -9606 100128501 LOC100128501 - - - 9 9q34.11 uncharacterized LOC100128501 unknown - - - - 20120508 -9606 100128503 DPPA2P2 - - HGNC:44627 1 1p36.11 developmental pluripotency associated 2 pseudogene 2 pseudo DPPA2P2 developmental pluripotency associated 2 pseudogene 2 O - 20121230 -9606 100128505 LOC100128505 - - - 9 9q33.1 uncharacterized LOC100128505 miscRNA - - - - 20121230 -9606 100128508 LOC100128508 - - - 5 5p15.2 PP12100 unknown - - - - 20121230 -9606 100128511 NEBL-AS1 - - HGNC:44899 10 10p12.31 NEBL antisense RNA 1 miscRNA NEBL-AS1 NEBL antisense RNA 1 O - 20121230 -9606 100128512 FXYD6P2 - - HGNC:4032 10 10p11.1 FXYD domain containing ion transport regulator 6 pseudogene 2 pseudo FXYD6P2 FXYD domain containing ion transport regulator 6 pseudogene 2 O - 20121230 -9606 100128514 ARHGAP42P5 - - HGNC:43942 14 14q11.2 Rho GTPase activating protein 42 pseudogene 5 pseudo ARHGAP42P5 Rho GTPase activating protein 42 pseudogene 5 O - 20121230 -9606 100128516 ATP5F1P5 - - HGNC:39746 11 11q24.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 5 pseudo ATP5F1P5 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 5 O - 20121230 -9606 100128517 LOC100128517 - - - 6 6p23 uncharacterized LOC100128517 protein-coding - - - - 20120511 -9606 100128519 RPS24P11 - RPS24_6_457 HGNC:36050 4 4p16.1 ribosomal protein S24 pseudogene 11 pseudo RPS24P11 ribosomal protein S24 pseudogene 11 O - 20121230 -9606 100128521 LOC100128521 - - - X Xp22.2 tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 100128522 HPRTP4 - - HGNC:5162 11 11q21 hypoxanthine phosphoribosyltransferase pseudogene 4 pseudo HPRTP4 hypoxanthine phosphoribosyltransferase pseudogene 4 O - 20121230 -9606 100128523 LOC100128523 - - - 16 16q12.2 mitochondrial carrier 2 pseudogene pseudo - - - - 20121230 -9606 100128525 UQCRFS1P1 - UQCRFSL1 HGNC:12588 22 22q13.1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 1 pseudo UQCRFS1P1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 1 O - 20121230 -9606 100128529 LOC100128529 - - - 19 19q13.32 uncharacterized LOC100128529 protein-coding - - - - 20120511 -9606 100128531 LOC100128531 - - - 22 22q11.23 uncharacterized LOC100128531 miscRNA - - - - 20121230 -9606 100128535 RPS18P14 - RPS18_10_1747 HGNC:36386 22 22q12.2 ribosomal protein S18 pseudogene 14 pseudo RPS18P14 ribosomal protein S18 pseudogene 14 O - 20121230 -9606 100128536 SETP8 - - HGNC:42927 X Xq23 SET pseudogene 8 pseudo SETP8 SET pseudogene 8 O - 20121230 -9606 100128537 C1orf132 AL035209.1 - HGNC:32018 1 1q32.2 chromosome 1 open reading frame 132 unknown C1orf132 chromosome 1 open reading frame 132 O - 20121021 -9606 100128540 LOC100128540 - - - 8 8q12.3 TAR DNA-binding protein 43-like pseudo - - - - 20121209 -9606 100128541 ATP6V1G1P2 - ATP6V1GP2 HGNC:29359 8 8q11.21 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 2 pseudo ATP6V1G1P2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 2 O - 20121230 -9606 100128542 LOC100128542 tcag7.1033 - - 7 7q36.1 blocked early in transport 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100128546 LOC100128546 - - - X Xq24 glutaredoxin 5 pseudogene pseudo - - - - 20121230 -9606 100128548 LOC100128548 - - - 8 8q22.1 ribosomal protein L17 pseudogene pseudo - - - - 20121230 -9606 100128551 LOC100128551 - - - 6 6q25.3 uncharacterized LOC100128551 protein-coding - - - - 20120511 -9606 100128553 CTAGE4 - cTAGE-4 HGNC:24772|MIM:608910|Ensembl:ENSG00000225932|Vega:OTTHUMG00000157997 7 7q35 CTAGE family, member 4 protein-coding CTAGE4 CTAGE family, member 4 O cutaneous T-cell lymphoma-associated antigen 4|cutaneous-T-cell-lymphoma-specific tumor antigen 4|protein cTAGE-4 20121230 -9606 100128554 LOC100128554 hCG_2015435 - - 12 12q24.32 uncharacterized LOC100128554 miscRNA - - - - 20121230 -9606 100128560 LOC100128560 - - - 17 17p13.1 uncharacterized LOC100128560 unknown - - - - 20120511 -9606 100128563 LOC100128563 - - - 2 2q37.3 uncharacterized LOC100128563 unknown - - - - 20121230 -9606 100128568 LOC100128568 - - - 19 19p13.3 uncharacterized LOC100128568 miscRNA - - - - 20121230 -9606 100128569 C19orf71 - - HGNC:34496|Ensembl:ENSG00000183397|Vega:OTTHUMG00000180764 19 19p13.3 chromosome 19 open reading frame 71 protein-coding C19orf71 chromosome 19 open reading frame 71 O Uncharacterized protein ENSP00000327950|uncharacterized protein C19orf71 20121230 -9606 100128571 LOC100128571 - - - 17 17q21.33 uncharacterized LOC100128571 protein-coding - - - - 20120511 -9606 100128573 LOC100128573 - - - 19 19p13.2 uncharacterized LOC100128573 miscRNA - - - - 20121230 -9606 100128574 ARMCX3-AS1 - - HGNC:41038 X Xq22.1 ARMCX3 antisense RNA 1 unknown ARMCX3-AS1 ARMCX3 antisense RNA 1 O - 20121230 -9606 100128575 LOC100128575 - - - 7 7p11.2 protein FAM182A-like pseudo - - - - 20121209 -9606 100128579 CDKN2AIPNLP2 - - HGNC:39855 2 2p23.3 CDKN2A interacting protein N-terminal like pseudogene 2 pseudo CDKN2AIPNLP2 CDKN2A interacting protein N-terminal like pseudogene 2 O - 20121230 -9606 100128582 SSX10 - - HGNC:34047 X Xp11.23 synovial sarcoma, X breakpoint 10 unknown SSX10 synovial sarcoma, X breakpoint 10 O - 20121021 -9606 100128588 LOC100128588 - - - 6 6q21 PIN2/TERF1 interacting, telomerase inhibitor 1 pseudogene pseudo - - - - 20121230 -9606 100128589 GAPDHP39 - - HGNC:37796 3 3q22.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 39 pseudo GAPDHP39 glyceraldehyde 3 phosphate dehydrogenase pseudogene 39 O - 20121230 -9606 100128590 SLC8A1-AS1 - - HGNC:44102 2 2p22.1 SLC8A1 antisense RNA 1 miscRNA SLC8A1-AS1 SLC8A1 antisense RNA 1 O - 20121230 -9606 100128591 LOC100128591 - - - 20 20q13.12 uncharacterized LOC100128591 protein-coding - - - - 20120511 -9606 100128592 LOC100128592 - - - 6 6q13 family with sequence similarity 136, member A pseudogene pseudo - - - - 20121230 -9606 100128593 LOC100128593 - - - 9 9q34.3 uncharacterized LOC100128593 miscRNA - - - - 20121230 -9606 100128594 LOC100128594 - - - X Xq22.2 uncharacterized LOC100128594 unknown - - - - 20121117 -9606 100128595 LOC100128595 - - - X Xq21.33 heterogeneous nuclear ribonucleoprotein D-like pseudogene pseudo - - - - 20121230 -9606 100128596 LOC100128596 - - - 7 7q32.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa pseudogene pseudo - - - - 20121230 -9606 100128601 LOC100128601 - - - X Xq22.1 zinc finger protein 770 pseudogene pseudo - - - - 20121230 -9606 100128603 LOC100128603 - - - 5 5q11.2 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 pseudogene pseudo - - - - 20121230 -9606 100128605 RPS15AP13 - RPS15A_3_241 HGNC:36774 2 2p13.2 ribosomal protein S15a pseudogene 13 pseudo RPS15AP13 ribosomal protein S15a pseudogene 13 O - 20121230 -9606 100128607 LOC100128607 - - - 2 2p14 uncharacterized LOC100128607 unknown - - - - 20121221 -9606 100128610 LOC100128610 - - - 6 6q12 UPF0607 protein ENSP00000383144-like pseudogene pseudo - - - - 20121230 -9606 100128617 UBA52P7 - RPL40_2_1281 HGNC:36615 12 12q24.21 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7 pseudo UBA52P7 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7 O - 20121230 -9606 100128618 SLC25A3P2 - - HGNC:43784 12 12q24.13 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 2 pseudo SLC25A3P2 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 2 O - 20121230 -9606 100128621 CYB5AP2 - CYB5P2 HGNC:2573 2 2q31.1 cytochrome b5 type A (microsomal) pseudogene 2 pseudo CYB5AP2 cytochrome b5 type A (microsomal) pseudogene 2 O - 20121230 -9606 100128622 LOC100128622 - - - 5 5q35.3 uncharacterized LOC100128622 pseudo - - - - 20121209 -9606 100128625 SRSF1P1 RP11-459J23.2 - HGNC:39417 13 13q21.33 serine/arginine-rich splicing factor 1 pseudogene 1 pseudo SRSF1P1 serine/arginine-rich splicing factor 1 pseudogene 1 O - 20121230 -9606 100128626 PPP1R2P10 - - HGNC:42008 13 13q21.31 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 10 pseudo PPP1R2P10 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 10 O - 20121230 -9606 100128627 CDC42P3 - - HGNC:44427 8 8q24.3 cell division cycle 42 pseudogene 3 pseudo CDC42P3 cell division cycle 42 pseudogene 3 O - 20121230 -9606 100128628 RGS17P1 RP11-2P5.4 - HGNC:39729 13 13q14.11 regulator of G-protein signaling 17 pseudogene 1 pseudo RGS17P1 regulator of G-protein signaling 17 pseudogene 1 O - 20121230 -9606 100128637 EEF1A1P26 - - HGNC:37899 7 7p21.2 eukaryotic translation elongation factor 1 alpha 1 pseudogene 26 pseudo EEF1A1P26 eukaryotic translation elongation factor 1 alpha 1 pseudogene 26 O - 20121230 -9606 100128639 HMGB1P48 - - HGNC:39281 1 1p34.1 high mobility group box 1 pseudogene 48 pseudo HMGB1P48 high mobility group box 1 pseudogene 48 O - 20121230 -9606 100128640 ACVR2B-AS1 - - HGNC:44161 3 3p22.2 ACVR2B antisense RNA 1 miscRNA ACVR2B-AS1 ACVR2B antisense RNA 1 O - 20121230 -9606 100128644 LOC100128644 UNQ6487 - - 3 3p25.1 LMNE6487 unknown - - - - 20121230 -9606 100128646 RPL10AP7 - RPL10A_2_460 HGNC:35601 4 4p15.32 ribosomal protein L10a pseudogene 7 pseudo RPL10AP7 ribosomal protein L10a pseudogene 7 O - 20121230 -9606 100128651 LOC100128651 - - - 4 4p16.1 uncharacterized LOC100128651 protein-coding - - - - 20120622 -9606 100128653 LOC100128653 - - - 7 7p22.3 uncharacterized LOC100128653 unknown - - - - 20121230 -9606 100128655 LOC100128655 - - - 6 6p21.2 ribosomal protein S2 pseudogene pseudo - - - - 20121230 -9606 100128657 CHCHD4P2 - - HGNC:44490 9 9q31.2 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 2 pseudo CHCHD4P2 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 2 O - 20121230 -9606 100128662 RPL27P3 - - - 1 1p36.23 ribosomal protein L27 pseudogene pseudo - - - - 20121230 -9606 100128664 RPL22P20 - RPL22_10_1337 HGNC:36281 14 14q11.2 ribosomal protein L22 pseudogene 20 pseudo RPL22P20 ribosomal protein L22 pseudogene 20 O - 20121230 -9606 100128665 FYTTD1P1 - - HGNC:38035 9 9q31.1 forty-two-three domain containing 1 pseudogene 1 pseudo FYTTD1P1 forty-two-three domain containing 1 pseudogene 1 O - 20121230 -9606 100128668 LOC100128668 - - - 20 20p12.3 uncharacterized LOC100128668 protein-coding - - - - 20120511 -9606 100128670 LOC100128670 - - - 9 9q22.2 uncharacterized LOC100128670 unknown - - - - 20120511 -9606 100128673 LOC100128673 - - - 12 12q21.1 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene pseudo - - - - 20121230 -9606 100128674 LOC100128674 - - - 12 12q21.1 splicing factor 4 pseudogene pseudo - - - - 20121230 -9606 100128675 LOC100128675 - - - 19 19q13.12 uncharacterized LOC100128675 miscRNA - - - - 20121230 -9606 100128676 LOC100128676 - - - 12 12q13.3 TBCC domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100128678 LOC100128678 - - - 12 12q13.13 BTB (POZ) domain containing 10 pseudogene pseudo - - - - 20121230 -9606 100128681 LOC100128681 - - - 12 12q21.1 cyclin G2 pseudogene pseudo - - - - 20121230 -9606 100128682 LOC100128682 - - - 19 19q13.12 uncharacterized LOC100128682 miscRNA - - - - 20121230 -9606 100128685 SLC16A14P1 - - HGNC:43809 8 8q23.1 solute carrier family 16, member 14 (monocarboxylic acid transporter 14) pseudogene 1 pseudo SLC16A14P1 solute carrier family 16, member 14 (monocarboxylic acid transporter 14) pseudogene 1 O - 20121230 -9606 100128686 LOC100128686 - - - 8 8q11.21 programmed cell death 10 pseudogene pseudo - - - - 20121230 -9606 100128688 GPR50-AS1 - - HGNC:40259 X Xq28 GPR50 antisense RNA 1 unknown GPR50-AS1 GPR50 antisense RNA 1 O - 20121021 -9606 100128690 ELL2P4 - - HGNC:39346 X Xq27.3 elongation factor, RNA polymerase II, 2 pseudogene 4 pseudo ELL2P4 elongation factor, RNA polymerase II, 2 pseudogene 4 O - 20121230 -9606 100128691 LOC100128691 - - - 5 5q23.1 hCG1810796-like protein-coding - - - uncharacterized protein LOC100128691 20121018 -9606 100128696 PABPC1P6 - - HGNC:37986 2 2p11.1 poly(A) binding protein, cytoplasmic 1 pseudogene 6 pseudo PABPC1P6 poly(A) binding protein, cytoplasmic 1 pseudogene 6 O - 20121230 -9606 100128697 LOC100128697 - - - 10 10q26.3 uncharacterized LOC100128697 protein-coding - - - - 20120511 -9606 100128699 LOC100128699 - - - 2 2q14.3 uncharacterized LOC100128699 unknown - - - - 20120511 -9606 100128701 LOC100128701 - - - 9 9p24.1 heterogeneous nuclear ribonucleoprotein A1-like 2 pseudogene pseudo - - - - 20121230 -9606 100128703 LOC100128703 - - - 11 11p15.5 uncharacterized LOC100128703 unknown - - - - 20120815 -9606 100128705 AK4P4 - - HGNC:39067 9 9p24.1 adenylate kinase 4 pseudogene 4 pseudo AK4P4 adenylate kinase 4 pseudogene 4 O - 20121230 -9606 100128707 MKI67IPP4 - - HGNC:44952 15 15q24.2 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 4 pseudo MKI67IPP4 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 4 O - 20121230 -9606 100128710 RPL9P30 - RPL9_11_1536 HGNC:36316 17 17q11.2 ribosomal protein L9 pseudogene 30 pseudo RPL9P30 ribosomal protein L9 pseudogene 30 O - 20121230 -9606 100128711 LOC100128711 - - - 15 15q21.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa pseudogene pseudo - - - - 20121230 -9606 100128712 LOC100128712 - - - 17 17q23.2 slowmo homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100128713 LOC100128713 - - - 17 17q22 zinc finger protein 816A pseudogene pseudo - - - - 20121230 -9606 100128714 LOC100128714 - - - 15 15q12 uncharacterized LOC100128714 miscRNA - - - - 20121230 -9606 100128721 LOC100128721 - - - 15 15q24.2 stromal cell-derived factor 2 pseudogene pseudo - - - - 20121230 -9606 100128723 CBX1P3 - - HGNC:38657 1 1q32.1 chromobox homolog 1 pseudogene 3 pseudo CBX1P3 chromobox homolog 1 pseudogene 3 O - 20121230 -9606 100128725 LOC100128725 - - - 4 4q13.2 apolipoprotein O pseudogene pseudo - - - - 20121230 -9606 100128727 LOC100128727 - - - 7 7q33 uncharacterized LOC100128727 unknown - - - - 20120511 -9606 100128731 OST4 - - HGNC:32483|Ensembl:ENSG00000228474|Vega:OTTHUMG00000151990 2 2p23.3 oligosaccharyltransferase 4 homolog (S. cerevisiae) protein-coding OST4 oligosaccharyltransferase 4 homolog (S. cerevisiae) O dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4 20121230 -9606 100128733 FCF1P3 - - HGNC:44615 3 3q13.12 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 3 pseudo FCF1P3 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 3 O - 20121230 -9606 100128738 LOC100128738 - - - X Xq13.2 leucine rich repeat (in FLII) interacting protein 2 pseudogene pseudo - - - - 20121230 -9606 100128739 LOC100128739 - - - 3 3q24 ubiquitin domain containing 2 pseudogene pseudo - - - - 20121230 -9606 100128740 LOC100128740 RP1-169I5.4-00 - - X Xp11.4 gem associated protein 7 pseudogene pseudo - - - - 20120815 -9606 100128745 RPLP1P8 - RPLP1_2_758 HGNC:36104 6 6q23.3 ribosomal protein, large, P1 pseudogene 8 pseudo RPLP1P8 ribosomal protein, large, P1 pseudogene 8 O - 20121230 -9606 100128750 LOC100128750 - - - 8 8p12 uncharacterized LOC100128750 miscRNA - - - - 20121230 -9606 100128751 LOC100128751 - - - 1 1q24.2 INM04 unknown - - - - 20121230 -9606 100128756 RPS7P9 - RPS7_5_1072 HGNC:36998 10 10q23.1 ribosomal protein S7 pseudogene 9 pseudo RPS7P9 ribosomal protein S7 pseudogene 9 O - 20121230 -9606 100128759 LOC100128759 - - - 2 2q24.1 heme binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100128762 LOC100128762 - - - 5 5q35.3 telomeric repeat binding factor 2, interacting protein pseudogene pseudo - - - - 20121230 -9606 100128764 PRKRIRP6 RP11-380N8.3 - HGNC:39570 13 13q12.13 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 6 pseudo PRKRIRP6 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 6 O - 20121230 -9606 100128766 RPL8P2 - - HGNC:17220 21 21q22.11 ribosomal protein L8 pseudogene 2 pseudo RPL8P2 ribosomal protein L8 pseudogene 2 O - 20121230 -9606 100128770 LOC100128770 - - - 16 16p13.3 uncharacterized LOC100128770 miscRNA - - - - 20121230 -9606 100128771 EIF4BP3 - - HGNC:37936 9 9q22.32 eukaryotic translation initiation factor 4B pseudogene 3 pseudo EIF4BP3 eukaryotic translation initiation factor 4B pseudogene 3 O - 20121230 -9606 100128772 LOC100128772 - - - 3 3p25.1 proline-rich protein 3-like pseudo - - - - 20121209 -9606 100128775 LOC100128775 - - - 1 1p31.1 neural precursor cell expressed, developmentally down-regulated 8 pseudogene pseudo - - - - 20121230 -9606 100128776 LOC100128776 - - - 18 18p11.21 non-SMC element 4 homolog A (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100128777 KLF8P1 - - HGNC:41520 16 16q12.1 Kruppel-like factor 8 pseudogene 1 pseudo KLF8P1 Kruppel-like factor 8 pseudogene 1 O - 20121230 -9606 100128781 FAM35A2 - FAM35AP HGNC:31427 14 14q31.3 family with sequence similarity 35, member A pseudogene pseudo FAM35A2 family with sequence similarity 35, member A2 (pseudogene) O - 20121230 -9606 100128782 LINC00476 NAG12 C9orf130|NAG11 HGNC:27858 9 9q22.32 long intergenic non-protein coding RNA 476 miscRNA LINC00476 long intergenic non-protein coding RNA 476 O - 20121230 -9606 100128785 GS85 - - - 16 16p13.3 uncharacterized LOC100128785 unknown - - - - 20120511 -9606 100128787 LOC100128787 - - - 1 1p21.2 uncharacterized LOC100128787 miscRNA - - - - 20121230 -9606 100128788 SRRM2-AS1 - - HGNC:44162 16 16p13.3 SRRM2 antisense RNA 1 miscRNA SRRM2-AS1 SRRM2 antisense RNA 1 O - 20121230 -9606 100128790 LOC100128790 - - - 9 9q21.2 lysophospholipase II pseudogene pseudo - - - - 20121230 -9606 100128792 LOC100128792 - - - 11 11q23.3 uncharacterized LOC100128792 unknown - - - - 20121018 -9606 100128795 LOC100128795 - - - 7 7p14.1 coiled-coil domain-containing protein 144A-like protein-coding - - - - 20120420 -9606 100128800 LOC100128800 - - - 11 11q14.3 Cdon homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100128801 DRAXINP1 - - HGNC:44334 X Xp22.31 dorsal inhibitory axon guidance protein pseudogene 1 pseudo DRAXINP1 dorsal inhibitory axon guidance protein pseudogene 1 O - 20121230 -9606 100128803 LOC100128803 - - - 5 5p15.33 Spi-C transcription factor (Spi-1/PU.1 related) pseudogene pseudo - - - - 20121230 -9606 100128804 LOC100128804 - - - 16 16p11.2 angiogenic factor with G patch and FHA domains 1 pseudogene pseudo - - - - 20121230 -9606 100128807 RPL35AP37 - RPL35A_16_1766 HGNC:36426 X Xp22.2 ribosomal protein L35a pseudogene 37 pseudo RPL35AP37 ribosomal protein L35a pseudogene 37 O - 20121230 -9606 100128808 LOC100128808 - - - X Xp22.31 chromosome 11 open reading frame 51 pseudogene pseudo - - - - 20121230 -9606 100128811 GPR158-AS1 - - HGNC:44163 10 10p12.1 GPR158 antisense RNA 1 miscRNA GPR158-AS1 GPR158 antisense RNA 1 O - 20121230 -9606 100128816 LOC100128816 UNQ3104 - - 12 12p13.32 ACAH3104 unknown - - - - 20121230 -9606 100128817 LOC100128817 - - - 12 12q12 adenylate kinase isoenzyme 6-like pseudo - - - - 20121209 -9606 100128818 LOC100128818 UNQ6126 - - 22 22q13.31 LPEQ6126 unknown - - - - 20121230 -9606 100128822 LOC100128822 - - - 7 7q36.1 uncharacterized LOC100128822 miscRNA - - - - 20121230 -9606 100128824 LOC100128824 - - - 4 4q33 uncharacterized LOC100128824 protein-coding - - - - 20120511 -9606 100128827 LOC100128827 - - - 3 3q29 FSHD region gene 2 pseudogene pseudo - - - - 20121230 -9606 100128830 LOC100128830 - - - 10 10q26.3 uncharacterized LOC100128830 unknown - - - - 20120511 -9606 100128833 LOC100128833 - - - 5 5q33.2 vacuolar protein sorting 37 homolog A pseudogene pseudo - - - - 20121230 -9606 100128834 LOC100128834 - - - 1 1q44 CDC-like kinase 3 pseudogene pseudo - - - - 20121230 -9606 100128836 LOC100128836 - - - 8 8q21.13 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100128840 LOC100128840 - - - 12 12q24.33 uncharacterized LOC100128840 unknown - - - - 20121230 -9606 100128843 LOC100128843 - - - 12 12q24.33 uncharacterized LOC100128843 unknown - - - - 20120511 -9606 100128845 LOC100128845 - - - 19 19p12 CDC42 effector protein (Rho GTPase binding) 3 pseudogene pseudo - - - - 20121230 -9606 100128849 LOC100128849 - - - 19 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100128851 LOC100128851 - - - 17 17p11.2 uncharacterized LOC100128851 protein-coding - - - - 20120511 -9606 100128853 ZNF725P - ZNF725 HGNC:32461 19 19p12 zinc finger protein 725, pseudogene pseudo ZNF725P zinc finger protein 725, pseudogene O - 20121230 -9606 100128857 LOC100128857 - - - 2 2p13.3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) pseudogene pseudo - - - - 20121230 -9606 100128863 RPS15AP29 - RPS15A_17_1092 HGNC:35981 10 10q24.32 ribosomal protein S15a pseudogene 29 pseudo RPS15AP29 ribosomal protein S15a pseudogene 29 O - 20121230 -9606 100128865 LOC100128865 - - - 4 4q12 methyltransferase like 5 pseudogene pseudo - - - - 20121230 -9606 100128867 RBM22P3 - - HGNC:39696 7 7p11.2 RNA binding motif protein 22 pseudogene 3 pseudo RBM22P3 RNA binding motif protein 22 pseudogene 3 O - 20121230 -9606 100128880 LOC100128880 - - - 10 10q26.11 RAD1 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100128881 LOC100128881 - - - 16 16q24.3 uncharacterized LOC100128881 miscRNA - - - - 20121230 -9606 100128882 LOC100128882 - - - 16 16q24.2 uncharacterized LOC100128882 unknown - - - uncharacterized protein LOC100128882 20120511 -9606 100128885 LOC100128885 - - - 7 7q11.21 uncharacterized LOC100128885 pseudo - - - - 20121230 -9606 100128888 RPSAP36 - RPSA_14_525 HGNC:35727 4 4q31.21 ribosomal protein SA pseudogene 36 pseudo RPSAP36 ribosomal protein SA pseudogene 36 O - 20121230 -9606 100128889 NDUFAF4P4 - - HGNC:44543 1 1q25.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 4 pseudo NDUFAF4P4 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 4 O - 20121230 -9606 100128890 FAM66B - FAM66E HGNC:28890 8 8p23.1 family with sequence similarity 66, member B miscRNA FAM66B family with sequence similarity 66, member B O - 20121230 -9606 100128893 LOC100128893 - - - 18 18q11.2 uncharacterized LOC100128893 miscRNA - - - - 20121230 -9606 100128894 NAP1L1P2 - - HGNC:38005 Y Yp11.31 nucleosome assembly protein 1-like 1 pseudogene 2 pseudo NAP1L1P2 nucleosome assembly protein 1-like 1 pseudogene 2 O - 20121230 -9606 100128895 LOC100128895 - - - 12 12q24.23 uncharacterized LOC100128895 unknown - - - - 20121230 -9606 100128898 LOC100128898 - - - 5 5q33.3 latexin pseudogene pseudo - - - - 20121230 -9606 100128899 RPL7L1P9 - - HGNC:39491 2 2q35 ribosomal protein L7-like 1 pseudogene 9 pseudo RPL7L1P9 ribosomal protein L7-like 1 pseudogene 9 O - 20121230 -9606 100128902 PRDX3P3 - - HGNC:39266 13 13q13.3 peroxiredoxin 3 pseudogene 3 pseudo PRDX3P3 peroxiredoxin 3 pseudogene 3 O - 20121230 -9606 100128903 NPM1P4 - NG4-5|NPMP4 HGNC:7924 13 13q12.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 4 pseudo NPM1P4 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 4 O - 20121230 -9606 100128905 LOC100128905 - - - 2 2q31.1 uncharacterized LOC100128905 protein-coding - - - - 20121209 -9606 100128906 LOC100128906 - - - 9 9q31.1 WDR45-like pseudogene pseudo - - - - 20121230 -9606 100128908 LOC100128908 - - - 14 14q11.2 uncharacterized LOC100128908 unknown - - - - 20121230 -9606 100128909 LOC100128909 - - - 9 9q22.2-q22.31 uncharacterized LOC100128909 miscRNA - - - - 20121209 -9606 100128911 PCNPP2 - - HGNC:41974 9 9q22.1 PEST containing nuclear protein pseudogene 2 pseudo PCNPP2 PEST containing nuclear protein pseudogene 2 O - 20121230 -9606 100128912 RPS21P4 - RPS21_2_461 HGNC:35922 4 4p15.32 ribosomal protein S21 pseudogene 4 pseudo RPS21P4 ribosomal protein S21 pseudogene 4 O - 20121230 -9606 100128922 LOC100128922 - - - 1 1p33 connexin unknown - - - - 20120710 -9606 100128923 RPS6P16 - RPS6_8_1176 HGNC:35668 11 11q23.1 ribosomal protein S6 pseudogene 16 pseudo RPS6P16 ribosomal protein S6 pseudogene 16 O - 20121230 -9606 100128926 LOC100128926 - - - 18 18p11.32 ubiquitin-conjugating enzyme E2 variant 1-like pseudo - - - - 20121209 -9606 100128927 ZBTB42 - ZNF925 HGNC:32550|MIM:613915|Ensembl:ENSG00000179627|Vega:OTTHUMG00000170790 14 14q32.33 zinc finger and BTB domain containing 42 protein-coding ZBTB42 zinc finger and BTB domain containing 42 O zinc finger and BTB domain-containing protein 42 20121230 -9606 100128929 LOC100128929 - - - X Xp21.3 archaelysin family metallopeptidase 2 pseudogene pseudo - - - - 20121230 -9606 100128930 SDCBPP1 RP11-298K24.2 - HGNC:44684 10 10p15.1 syndecan binding protein (syntenin) pseudogene 1 pseudo SDCBPP1 syndecan binding protein (syntenin) pseudogene 1 O - 20121230 -9606 100128934 FXYD6P1 - - HGNC:4031 10 10q11.21 FXYD domain containing ion transport regulator 6 pseudogene 1 pseudo FXYD6P1 FXYD domain containing ion transport regulator 6 pseudogene 1 O - 20121230 -9606 100128936 RPL10AP6 - RPL10A_1_376 HGNC:36504 3 3p14.2 ribosomal protein L10a pseudogene 6 pseudo RPL10AP6 ribosomal protein L10a pseudogene 6 O - 20121230 -9606 100128939 LOC100128939 - - - 14 14q32.12 pyruvate dehydrogenase kinase, isozyme 3 pseudogene pseudo - - - - 20121230 -9606 100128944 YWHAQP3 - - HGNC:37682 12 12q13.3 YWHAQ pseudogene 3 pseudo YWHAQP3 YWHAQ pseudogene 3 O - 20121230 -9606 100128946 LOC100128946 - - - 22 22q13.32 uncharacterized LOC100128946 miscRNA - - - - 20121230 -9606 100128948 LOC100128948 - - - 19 19q13.12 zinc finger protein 607 pseudogene pseudo - - - - 20121230 -9606 100128950 LOC100128950 - - - 3 3q29 uncharacterized LOC100128950 protein-coding - - - - 20120511 -9606 100128958 LOC100128958 - - - 1 1q43 ferredoxin 1-like pseudogene pseudo - - - - 20121230 -9606 100128961 GAPDHP62 - GAPDHL7|GAPDL7 HGNC:4156 8 8q22.2 glyceraldehyde 3 phosphate dehydrogenase pseudogene 62 pseudo GAPDHP62 glyceraldehyde 3 phosphate dehydrogenase pseudogene 62 O - 20121230 -9606 100128963 RPL3P9 - RPL3_6_918 HGNC:36839 8 8q21.13 ribosomal protein L3 pseudogene 9 pseudo RPL3P9 ribosomal protein L3 pseudogene 9 O - 20121230 -9606 100128964 LOC100128964 - - - 2 2q12.3 serine/arginine-rich splicing factor 3-like pseudo - - - - 20121209 -9606 100128966 LOC100128966 - - - 5 5q31.2 uncharacterized LOC100128966 unknown - - - uncharacterized protein LOC100128966 20120511 -9606 100128974 LOC100128974 - - - 15 15q14 RNA binding motif protein 17 pseudogene pseudo - - - - 20121230 -9606 100128977 MAPT-AS1 - - HGNC:43738 17 17q21.31 MAPT antisense RNA 1 miscRNA MAPT-AS1 MAPT antisense RNA 1 O - 20121230 -9606 100128979 LOC100128979 - - - 15 15q22.2 uncharacterized LOC100128979 unknown - - - - 20121230 -9606 100128981 LOC100128981 - - - X Xp11.22 G antigen family D member 5-like pseudo - - - - 20121209 -9606 100128982 LOC100128982 - - - 5 5q11.2 katanin p80 subunit B-like 1 pseudogene pseudo - - - - 20121230 -9606 100128983 LOC100128983 - - - 4 4q28.2 mbt domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100128984 RPL35AP7 - RPL35A_1_109 HGNC:36212 1 1q23.3 ribosomal protein L35a pseudogene 7 pseudo RPL35AP7 ribosomal protein L35a pseudogene 7 O - 20121230 -9606 100128985 LOC100128985 - - - 6 6q16.2 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100128988 LOC100128988 - - - 20 20q12 uncharacterized LOC100128988 unknown - - - - 20121230 -9606 100128990 LOC100128990 - - - 10 10q23.31 mediator complex subunit 6 pseudogene pseudo - - - - 20121230 -9606 100128991 RSL24D1P9 - - HGNC:37880 18 18q21.2 ribosomal L24 domain containing 1 pseudogene 9 pseudo RSL24D1P9 ribosomal L24 domain containing 1 pseudogene 9 O - 20121230 -9606 100128993 LOC100128993 - - - 8 8p21.3 uncharacterized LOC100128993 miscRNA - - - - 20121230 -9606 100128998 C20orf181 RP5-824A14.1 dJ824A14.1 HGNC:16174 20 20q13.33 chromosome 20 open reading frame 181 unknown C20orf181 chromosome 20 open reading frame 181 O - 20121230 -9606 100129001 LOC100129001 - - - X Xq21.33 general transcription factor IIIC, polypeptide 6, alpha 35kDa pseudogene pseudo - - - - 20121230 -9606 100129004 RPL3P10 - RPL3_5_896 HGNC:36819 8 8p11.22 ribosomal protein L3 pseudogene 10 pseudo RPL3P10 ribosomal protein L3 pseudogene 10 O - 20121230 -9606 100129005 LOC100129005 - - - 3 3p11.2 apolipoprotein O pseudogene pseudo - - - - 20121230 -9606 100129007 FMO8P - - HGNC:32209 1 1q24.1 flavin containing monooxygenase 8 pseudogene pseudo FMO8P flavin containing monooxygenase 8 pseudogene O - 20121230 -9606 100129008 CUL4AP1 - - HGNC:44027 4 4q26 cullin 4A pseudogene 1 pseudo CUL4AP1 cullin 4A pseudogene 1 O - 20121230 -9606 100129009 DCAF13P1 - - HGNC:43866 7 7q22.3 DDB1 and CUL4 associated factor 13 pseudogene 1 pseudo DCAF13P1 DDB1 and CUL4 associated factor 13 pseudogene 1 O - 20121230 -9606 100129011 LSM6P1 - HsT818|LSM6P HGNC:31738 18 18q21.33 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 1 pseudo LSM6P1 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100129013 ACTR3P2 - - HGNC:38676 X Xq13.1 ARP3 actin-related protein 3 homolog (yeast) pseudogene 2 pseudo ACTR3P2 ARP3 actin-related protein 3 homolog (yeast) pseudogene 2 O - 20121230 -9606 100129017 RPL24P5 - RPL24_1_143 HGNC:36102 1 1q31.3 ribosomal protein L24 pseudogene 5 pseudo RPL24P5 ribosomal protein L24 pseudogene 5 O - 20121230 -9606 100129020 LOC100129020 - - - 12 12q24.21 uncharacterized LOC100129020 unknown - - - uncharacterized protein LOC100129020 20120511 -9606 100129023 ARF4P4 - - HGNC:37628 13 13q31.1 ADP-ribosylation factor 4 pseudogene 4 pseudo ARF4P4 ADP-ribosylation factor 4 pseudogene 4 O - 20121230 -9606 100129027 LOC100129027 - - - 21 21q22.3 uncharacterized LOC100129027 miscRNA - - - - 20121230 -9606 100129028 RPLP1P4 - RPLP1_3_298 HGNC:36939 2 2q31.1 ribosomal protein, large, P1 pseudogene 4 pseudo RPLP1P4 ribosomal protein, large, P1 pseudogene 4 O - 20121230 -9606 100129029 LOC100129029 - - - 2 2q24.1 uncharacterized LOC100129029 unknown - - - - 20120622 -9606 100129031 UBL5P3 - - HGNC:44641 3 3p14.2 ubiquitin-like 5 pseudogene 3 pseudo UBL5P3 ubiquitin-like 5 pseudogene 3 O - 20121230 -9606 100129032 GLYATL1P1 - - HGNC:37866 11 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 1 pseudo GLYATL1P1 glycine-N-acyltransferase-like 1 pseudogene 1 O - 20121230 -9606 100129033 LOC100129033 UNQ5815 - - 6 6p25.1 QIQN5815 unknown - - - - 20121230 -9606 100129034 LOC100129034 - - - 9 9q33.3 uncharacterized LOC100129034 miscRNA - - - - 20121230 -9606 100129037 LOC100129037 - - - 4 4p16.3 WEE1 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100129040 CCDC11P1 - - HGNC:43919 5 5p13.1 coiled-coil domain containing 11 pseudogene 1 pseudo CCDC11P1 coiled-coil domain containing 11 pseudogene 1 O - 20121230 -9606 100129042 LOC100129042 - - - 1 1p36.21 uncharacterized LOC100129042 protein-coding - - - - 20120511 -9606 100129045 EIF3KP2 - - HGNC:44017 3 3p24.2 eukaryotic translation initiation factor 3, subunit K pseudogene 2 pseudo EIF3KP2 eukaryotic translation initiation factor 3, subunit K pseudogene 2 O - 20121230 -9606 100129046 LOC100129046 - - - 1 1p22.1 uncharacterized LOC100129046 miscRNA - - - - 20121230 -9606 100129048 LOC100129048 - - - 1 1p36.23 uncharacterized LOC100129048 unknown - - - - 20120511 -9606 100129049 LOC100129049 - - - X Xp21.2 phosphatidylinositol glycan anchor biosynthesis, class F pseudogene pseudo - - - - 20121230 -9606 100129050 LOC100129050 - - - 7 7p12.3 capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100129052 LOC100129052 - - - 6 6p25.2 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100129053 LOC100129053 - - - 11 11q21 lysine (K)-specific demethylase 4E pseudogene pseudo - - - - 20121230 -9606 100129055 LOC100129055 - - - 10 10p11.1 cyclin Y-like pseudogene pseudo - - - - 20121230 -9606 100129058 IQCF5-AS1 - - HGNC:41297 3 3p21.2 IQCF5 antisense RNA 1 unknown IQCF5-AS1 IQCF5 antisense RNA 1 O - 20121021 -9606 100129060 LOC100129060 - - - 3 3p21.31 uncharacterized LOC100129060 unknown - - - - 20121230 -9606 100129061 RPL7P25 - RPL7_12_684 HGNC:36455 6 6p21.31 ribosomal protein L7 pseudogene 25 pseudo RPL7P25 ribosomal protein L7 pseudogene 25 O - 20121230 -9606 100129066 UNQ6494 UNQ6494 - - 9 9q22.2 uncharacterized LOC100129066 miscRNA - - - - 20121230 -9606 100129067 LOC100129067 - - - 11 11q12.3 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100129069 LOC100129069 - - - 11 11q24.2 uncharacterized LOC100129069 protein-coding - - - - 20120511 -9606 100129072 LOC100129072 - - - 14 14q32.2 uncharacterized LOC100129072 unknown - - - - 20120511 -9606 100129074 PRKRIRP5 - - HGNC:39569 6 6p24.2 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 5 pseudo PRKRIRP5 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 5 O - 20121230 -9606 100129075 KTN1-AS1 - C14orf33 HGNC:19842 14 14q22.3 KTN1 antisense RNA 1 miscRNA KTN1-AS1 KTN1 antisense RNA 1 O - 20121230 -9606 100129078 LOC100129078 - - - 12 12q12 tetratricopeptide repeat domain 5 pseudogene pseudo - - - - 20121230 -9606 100129080 TDGF1P7 - CR-7|CRIPTO-7|TDGF7 HGNC:11707 19 19q13.2 teratocarcinoma-derived growth factor 1 pseudogene 7 pseudo TDGF1P7 teratocarcinoma-derived growth factor 1 pseudogene 7 O - 20121230 -9606 100129083 LOC100129083 - - - 19 19q13.41 uncharacterized LOC100129083 protein-coding - - - uncharacterized protein LOC100129083 20121230 -9606 100129085 LOC100129085 - - - 19 19q13.12 selenoprotein K pseudogene pseudo - - - - 20121230 -9606 100129086 HIGD1AP1 HC20185 HIG1|HIGD1D|HIGD1DP HGNC:22804 12 12q13.13 HIG1 hypoxia inducible domain family, member 1A pseudogene 1 pseudo HIGD1AP1 HIG1 hypoxia inducible domain family, member 1A pseudogene 1 O - 20121230 -9606 100129089 LOC100129089 - - - 18 18q23 uncharacterized LOC100129089 unknown - - - - 20120511 -9606 100129090 RPS5P4 - RPS5_1_162 HGNC:36122 1 1q32.3 ribosomal protein S5 pseudogene 4 pseudo RPS5P4 ribosomal protein S5 pseudogene 4 O - 20121230 -9606 100129094 BTNL10 - BUTR1 HGNC:42540 1 1q42.13 butyrophilin-like 10 protein-coding BTNL10 butyrophilin-like 10 O butyrophilin related 1|butyrophilin-like protein 10 20121230 -9606 100129096 LOC100129096 - - - 8 8q13.2 tropomyosin 1 (alpha) pseudogene pseudo - - - - 20121230 -9606 100129098 LOC100129098 - - - 8 8q11.23 uncharacterized LOC100129098 protein-coding - - - - 20121209 -9606 100129099 LOC100129099 - - - 5 5q22.1 proline-rich nuclear receptor coactivator 2 pseudogene pseudo - - - - 20121230 -9606 100129100 LOC100129100 - - - 8 8q21.3 uncharacterized LOC100129100 pseudo - - - - 20121209 -9606 100129102 RPL22P4 - RPL22_2_154 HGNC:36299 1 1q32.1 ribosomal protein L22 pseudogene 4 pseudo RPL22P4 ribosomal protein L22 pseudogene 4 O - 20121230 -9606 100129104 LOC100129104 - - - 8 8q24.22 uncharacterized LOC100129104 unknown - - - - 20121017 -9606 100129107 LOC100129107 - - - 9 9p24.1 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) pseudogene pseudo - - - - 20121230 -9606 100129108 LOC100129108 - - - 11 11p11.12 tripartite motif containing 64B pseudogene pseudo - - - - 20121230 -9606 100129110 LOC100129110 - - - 1 1p36.33 uncharacterized LOC100129110 protein-coding - - - - 20120511 -9606 100129111 LOC100129111 - - - 11 11p15.4 uncharacterized LOC100129111 unknown - - - - 20120511 -9606 100129112 LOC100129112 - - - 17 17q23.2 uncharacterized LOC100129112 protein-coding - - - - 20121018 -9606 100129113 LOC100129113 - - - 22 22q11.21 uncharacterized LOC100129113 unknown - - - - 20121018 -9606 100129115 LOC100129115 - - - 17 17q21.31 uncharacterized LOC100129115 protein-coding - - - - 20120511 -9606 100129118 LOC100129118 - - - 19 19p13.12 transmembrane protein 167A pseudogene pseudo - - - - 20121230 -9606 100129123 ACE3P - ACE3 HGNC:44365 17 17q23.3 angiotensin I converting enzyme (peptidyl-dipeptidase A) 3, pseudogene pseudo ACE3P angiotensin I converting enzyme (peptidyl-dipeptidase A) 3, pseudogene O - 20121230 -9606 100129124 TVP23BP1 - FAM18B3P HGNC:31127 15 15q12 trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 1 pseudo TVP23BP1 trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100129125 LOC100129125 - - - 17 17p11.2 uncharacterized LOC100129125 protein-coding - - - - 20120511 -9606 100129126 LOC100129126 hCG_1812962 - - 7 7q11.21 uncharacterized LOC100129126 protein-coding - - - - 20120511 -9606 100129128 KHDC1L RP11-257K9.7 - HGNC:37274|Ensembl:ENSG00000256980|Vega:OTTHUMG00000132474 6 6q13 KH homology domain containing 1-like protein-coding KHDC1L KH homology domain containing 1-like O RP11-257K9.7|putative KHDC1-like protein 20121230 -9606 100129129 LOC100129129 - - - 8 8p23.1 uncharacterized LOC100129129 unknown - - - - 20121230 -9606 100129130 LOC100129130 - - - 7 7q11.23 THO complex 4 pseudogene pseudo - - - - 20121230 -9606 100129133 LOC100129133 - - - X Xq21.31 transmembrane protein 184C pseudogene pseudo - - - - 20121230 -9606 100129135 LOC100129135 - - - 18 18q22.1 selenocysteine insertion sequence-binding protein 2-like pseudo - - - - 20121230 -9606 100129137 LOC100129137 - - - 4 4q22.1 CD53 molecule pseudogene pseudo - - - - 20121230 -9606 100129138 LOC100129138 - - - 1 1p21.1 THAP domain containing, apoptosis associated protein 3 pseudogene pseudo - - - - 20121230 -9606 100129140 LOC100129140 - - - 2 2p14 DnaJ (Hsp40) homolog, subfamily B, member 12 pseudogene pseudo - - - - 20121230 -9606 100129141 RPL21P37 - RPL21_11_229 HGNC:35704 2 2p15 ribosomal protein L21 pseudogene 37 pseudo RPL21P37 ribosomal protein L21 pseudogene 37 O - 20121230 -9606 100129143 LOC100129143 - - - 18 18q21.1 single-strand-selective monofunctional uracil-DNA glycosylase 1 pseudogene pseudo - - - - 20121230 -9606 100129144 LOC100129144 - - - X Xq12 zinc finger protein 681 pseudogene pseudo - - - - 20121230 -9606 100129148 LOC100129148 - - - 7 7q34 uncharacterized LOC100129148 miscRNA - - - - 20121230 -9606 100129149 LOC100129149 - - - 2 2p22.2 uncharacterized LOC100129149 unknown - - - - 20121017 -9606 100129155 LOC100129155 - - - 6 6q21 phosphatase, orphan 1 pseudogene pseudo - - - - 20121230 -9606 100129156 LOC100129156 - - - 10 10q22.3 retinoblastoma binding protein 6 pseudogene pseudo - - - - 20121230 -9606 100129160 LOC100129160 - - - 1 1q23.3 nicotinamide nucleotide adenylyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100129162 RSL24D1P2 - - HGNC:37867 2 2p15 ribosomal L24 domain containing 1 pseudogene 2 pseudo RSL24D1P2 ribosomal L24 domain containing 1 pseudogene 2 O - 20121230 -9606 100129167 RFESDP1 - - HGNC:39420 13 13q12.12 Rieske (Fe-S) domain containing pseudogene 1 pseudo RFESDP1 Rieske (Fe-S) domain containing pseudogene 1 O - 20121230 -9606 100129168 LOC100129168 - - - 21 21q22.11 chromosome 6 open reading frame 203 pseudogene pseudo - - - - 20121230 -9606 100129171 LOC100129171 - - - 2 2q36.1 uncharacterized LOC100129171 protein-coding - - - - 20120511 -9606 100129174 POLR2KP2 RP11-90M2.3 - HGNC:42652 13 13q14.2 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 2 pseudo POLR2KP2 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 2 O - 20121230 -9606 100129175 LOC100129175 - - - 2 2q35 uncharacterized LOC100129175 miscRNA - - - - 20121230 -9606 100129176 RPL13P6 - RPL13AP4|RPL13_5_1409 HGNC:19809 14 14q32.32 ribosomal protein L13 pseudogene 6 pseudo RPL13P6 ribosomal protein L13 pseudogene 6 O - 20121230 -9606 100129179 RPL9P5 - RPL9_9_1374 HGNC:23557 14 14q23.1 ribosomal protein L9 pseudogene 5 pseudo RPL9P5 ribosomal protein L9 pseudogene 5 O - 20121230 -9606 100129180 RPL36AP11 - RPL36A_2_73 HGNC:36385 1 1p22.1 ribosomal protein L36a pseudogene 11 pseudo RPL36AP11 ribosomal protein L36a pseudogene 11 O - 20121230 -9606 100129184 LOC100129184 - - - 16 16p11.2 uncharacterized LOC100129184 pseudo - - - - 20121230 -9606 100129186 LOC100129186 - - - 5 5p12 uncharacterized LOC100129186 unknown - - - - 20120511 -9606 100129192 MICC - PERB11.3 HGNC:7092 6 6p22.1 MHC class I polypeptide-related sequence C (pseudogene) pseudo MICC MHC class I polypeptide-related sequence C (pseudogene) O - 20121230 -9606 100129193 MUP - - - 9 9q32 major urinary protein pseudogene pseudo - - - - 20121230 -9606 100129195 LOC100129195 - - - 6 6p22.1 uncharacterized LOC100129195 miscRNA - - - - 20121230 -9606 100129196 MATN1-AS1 - - HGNC:40364 1 1p35.2 MATN1 antisense RNA 1 miscRNA MATN1-AS1 MATN1 antisense RNA 1 O - 20121230 -9606 100129198 LOC100129198 - - - 3 3p26.3 PRO2866 unknown - - - - 20121006 -9606 100129199 RPS3AP40 - RPS3A_19_1151 HGNC:35869 11 11q13.2 ribosomal protein S3a pseudogene 40 pseudo RPS3AP40 ribosomal protein S3a pseudogene 40 O - 20121230 -9606 100129201 LOC100129201 - - - 11 11q23.3 proline rich 13 pseudogene pseudo - - - - 20121230 -9606 100129202 LOC100129202 - - - 9 9q22.1 arginine/serine-rich coiled-coil 1 pseudogene pseudo - - - - 20121230 -9606 100129203 LOC100129203 - - - 11 11q21 uncharacterized LOC100129203 miscRNA - - - - 20121209 -9606 100129204 LOC100129204 - - - 5 5p15.33 uncharacterized LOC100129204 protein-coding - - - - 20120511 -9606 100129205 LOC100129205 - - - 1 1p31.3 ribosomal protein S24 pseudogene pseudo - - - - 20121230 -9606 100129213 LOC100129213 - - - 10 10p12.33 uncharacterized LOC100129213 miscRNA - - - - 20121230 -9606 100129215 LOC100129215 - - - 16 16q24.2 uncharacterized LOC100129215 unknown - - - - 20121230 -9606 100129216 LOC100129216 - - - 11 11q13.4 beta-defensin 131-like protein-coding - - - - 20121230 -9606 100129223 LOC100129223 - - - 12 12p13.32 uncharacterized LOC100129223 unknown - - - - 20121230 -9606 100129224 LOC100129224 - - - 22 - uncharacterized LOC100129224 pseudo - - - - 20121209 -9606 100129227 RPS6P22 - RPS6_10_1242 HGNC:35655 12 12q14.1 ribosomal protein S6 pseudogene 22 pseudo RPS6P22 ribosomal protein S6 pseudogene 22 O - 20121230 -9606 100129229 LOC100129229 - - - X Xq27.3 heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudogene pseudo - - - - 20121230 -9606 100129231 HSPA8P20 - - HGNC:44936 X Xq25 heat shock 70kDa protein 8 pseudogene 20 pseudo HSPA8P20 heat shock 70kDa protein 8 pseudogene 20 O - 20121230 -9606 100129233 LOC100129233 - - - 5 5q21.3 uncharacterized LOC100129233 unknown - - - - 20121230 -9606 100129234 RPL27P7 - RPL27_3_270 HGNC:36107 2 2q14.2 ribosomal protein L27 pseudogene 7 pseudo RPL27P7 ribosomal protein L27 pseudogene 7 O - 20121230 -9606 100129237 NPM1P21 - - HGNC:13855 8 8q12.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 21 pseudo NPM1P21 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 21 O - 20121230 -9606 100129239 CXorf51A - CXorf51 HGNC:30533 X Xq27.3 chromosome X open reading frame 51A protein-coding CXorf51A chromosome X open reading frame 51A O uncharacterized protein LOC100129239 20121230 -9606 100129240 LOC100129240 - - - 4 4q35.1 uncharacterized LOC100129240 protein-coding - - - - 20120511 -9606 100129243 RPS15AP12 - RPS15A_5_166 HGNC:36759 1 1q41 ribosomal protein S15a pseudogene 12 pseudo RPS15AP12 ribosomal protein S15a pseudogene 12 O - 20121230 -9606 100129245 LOC100129245 - - - 4 4q35.1 GAR1 ribonucleoprotein homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100129248 LOC100129248 RP11-39K24.9 - - 9 9p24.1 polyprenyl pyrophosphate synthetase pseudogene pseudo - - - - 20121230 -9606 100129250 LOC100129250 - - - 9 9p21.1 uncharacterized LOC100129250 miscRNA - - - - 20121230 -9606 100129251 FTLP4 - - HGNC:37952 9 9p21.1 ferritin, light polypeptide pseudogene 4 pseudo FTLP4 ferritin, light polypeptide pseudogene 4 O - 20121230 -9606 100129254 LOC100129254 - - - 22 22q11.21 chromosome 3 open reading frame 38 pseudogene pseudo - - - - 20121230 -9606 100129256 LOC100129256 - - - 15 15q22.2 nicotinamide nucleotide adenylyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100129259 BRD7P5 RP11-477B16.3 - HGNC:37631 13 13q32.1 bromodomain containing 7 pseudogene 5 pseudo BRD7P5 bromodomain containing 7 pseudogene 5 O - 20121230 -9606 100129260 RPL7L1P1 - - HGNC:39455 13 13q31.3 ribosomal protein L7-like 1 pseudogene 1 pseudo RPL7L1P1 ribosomal protein L7-like 1 pseudogene 1 O - 20121230 -9606 100129262 LOC100129262 - - - 22 22q11.21 ribosomal protein L28 pseudogene pseudo - - - - 20121230 -9606 100129265 LOC100129265 - - - 19 19p12 zinc finger protein 66-like pseudo - - - - 20121230 -9606 100129269 LOC100129269 - - - 1 1p13.2 uncharacterized LOC100129269 miscRNA - - - - 20121230 -9606 100129271 C1orf68 RP1-43O17.3 LEP7|XP32 HGNC:29468|Ensembl:ENSG00000198854 1 1q21.3 chromosome 1 open reading frame 68 protein-coding C1orf68 chromosome 1 open reading frame 68 O skin-specific protein (xp32)|skin-specific protein 32 20121230 -9606 100129272 LOC100129272 - - - X Xq13.2 translocase of outer mitochondrial membrane 20 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100129274 LOC100129274 - - - 1 1q31.1 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100129275 LOC100129275 - - - 3 3q13.33 uncharacterized LOC100129275 protein-coding - - - - 20120511 -9606 100129276 LOC100129276 - - - 7 7p11.2 RNA exonuclease 1 homolog pseudo - - - - 20121230 -9606 100129277 TPMTP3 - - HGNC:44566 X Xp11.22 thiopurine S-methyltransferase pseudogene 3 pseudo TPMTP3 thiopurine S-methyltransferase pseudogene 3 O - 20121230 -9606 100129278 LOC100129278 - - - 2 2p24.1 tudor domain-containing protein 6-like protein-coding - - - - 20120511 -9606 100129279 RPS27P14 - RPS27_7_572 HGNC:35923 5 5q13.2 ribosomal protein S27 pseudogene 14 pseudo RPS27P14 ribosomal protein S27 pseudogene 14 O - 20121230 -9606 100129280 LOC100129280 - - - 7 7q21.3 uncharacterized LOC100129280 protein-coding - - - - 20120508 -9606 100129283 LDHBP3 - - HGNC:39136 5 5q14.3 lactate dehydrogenase B pseudogene 3 pseudo LDHBP3 lactate dehydrogenase B pseudogene 3 O - 20121230 -9606 100129284 RPS15AP39 - RPS15A_14_1774 HGNC:35800 X Xp11.4 ribosomal protein S15a pseudogene 39 pseudo RPS15AP39 ribosomal protein S15a pseudogene 39 O - 20121230 -9606 100129288 MORF4L1P5 - MORF4LP5 HGNC:35425 X Xq11.2 mortality factor 4 like 1 pseudogene 5 pseudo MORF4L1P5 mortality factor 4 like 1 pseudogene 5 O - 20121230 -9606 100129291 LOC100129291 - - - X Xq13.1 uncharacterized LOC100129291 pseudo - - - - 20121209 -9606 100129292 LOC100129292 - - - 20 20q13.12 uncharacterized LOC100129292 protein-coding - - - - 20120511 -9606 100129293 LOC100129293 - - - 7 7q11.21 IgLON family member 5 pseudogene pseudo - - - - 20121230 -9606 100129295 LOC100129295 - - - 1 1q25.3 ribosomal protein L22 pseudogene pseudo - - - - 20121230 -9606 100129297 LOC100129297 - - - 3 3q13.2 uncharacterized LOC100129297 unknown - - - - 20121230 -9606 100129298 TPMTP4 - - HGNC:44567 X Xq21.2 thiopurine S-methyltransferase pseudogene 4 pseudo TPMTP4 thiopurine S-methyltransferase pseudogene 4 O - 20121230 -9606 100129306 RPS20P32 - RPS20_15_1306 HGNC:36444 13 13q12.13 ribosomal protein S20 pseudogene 32 pseudo RPS20P32 ribosomal protein S20 pseudogene 32 O - 20121230 -9606 100129307 LOC100129307 - - - 13 13q22.3 UPF0607 protein ENSP00000383144-like protein-coding - - - Putative UPF0607 protein ENSP00000383144 20121230 -9606 100129308 DNAJA1P1 - - HGNC:39337 13 13q21.1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 1 pseudo DNAJA1P1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 1 O - 20121230 -9606 100129310 RPL31P14 - RPL31_4_324 HGNC:35477 2 2q35 ribosomal protein L31 pseudogene 14 pseudo RPL31P14 ribosomal protein L31 pseudogene 14 O - 20121230 -9606 100129311 LOC100129311 - - - 21 21q22.3 uncharacterized LOC100129311 protein-coding - - - - 20120511 -9606 100129312 LOC100129312 - - - 2 2q31.1 uncharacterized LOC100129312 unknown - - - - 20121018 -9606 100129315 VN1R66P - - HGNC:37386 16 16p11.2 vomeronasal 1 receptor 66 pseudogene pseudo VN1R66P vomeronasal 1 receptor 66 pseudogene O - 20121230 -9606 100129316 LOC100129316 - - - 9 9q22.2 uncharacterized LOC100129316 miscRNA - - - - 20121230 -9606 100129319 SLC25A6P5 - - HGNC:43854 9 9q31.2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 5 pseudo SLC25A6P5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 5 O - 20121230 -9606 100129320 HMGB3P10 - - HGNC:39302 1 1p21.2 high mobility group box 3 pseudogene 10 pseudo HMGB3P10 high mobility group box 3 pseudogene 10 O - 20121230 -9606 100129321 LOC100129321 - - - 7 7p14.1 single stranded DNA binding protein 3 pseudogene pseudo - - - - 20121230 -9606 100129322 LOC100129322 - - - 6 6p24.1 uncharacterized LOC100129322 protein-coding - - - - 20120511 -9606 100129324 LOC100129324 - - - 16 16q22.1 uncharacterized LOC100129324 protein-coding - - - - 20120511 -9606 100129325 LOC100129325 - - - 1 1p31.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100129329 SNRPEP3 - - HGNC:43445 16 16p12.3 small nuclear ribonucleoprotein polypeptide E pseudogene 3 pseudo SNRPEP3 small nuclear ribonucleoprotein polypeptide E pseudogene 3 O - 20121230 -9606 100129331 LOC100129331 - - - 9 9p11.2 RAB28, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100129332 RPL29P20 - RPL29_10_1009 HGNC:36682 9 9q32 ribosomal protein L29 pseudogene 20 pseudo RPL29P20 ribosomal protein L29 pseudogene 20 O - 20121230 -9606 100129337 EIF4BP2 - - HGNC:37935 10 10p12.31 eukaryotic translation initiation factor 4B pseudogene 2 pseudo EIF4BP2 eukaryotic translation initiation factor 4B pseudogene 2 O - 20121230 -9606 100129339 TPSP1 - MP-2 HGNC:14182 16 16p13.3 tryptase pseudogene 1 pseudo TPSP1 tryptase pseudogene 1 O - 20121230 -9606 100129340 LOC100129340 - - - 9 9q22.1 mitofusin-1-like pseudo - - - - 20121209 -9606 100129344 LOC100129344 - - - 4 4p16.1 developmental pluripotency associated 4 pseudogene pseudo - - - - 20121230 -9606 100129345 LOC100129345 - - - 14 14q32.2 uncharacterized LOC100129345 miscRNA - - - - 20121230 -9606 100129347 LINC00484 - C9orf73 HGNC:27862 9 9q22.2 long intergenic non-protein coding RNA 484 unknown LINC00484 long intergenic non-protein coding RNA 484 O - 20121021 -9606 100129348 LOC100129348 - - - 1 1p22.3 cell division cycle associated 4 pseudogene pseudo - - - - 20121230 -9606 100129351 AGGF1P4 - - HGNC:38054 16 16p11.1 angiogenic factor with G patch and FHA domains 1 pseudogene 4 pseudo AGGF1P4 angiogenic factor with G patch and FHA domains 1 pseudogene 4 O - 20121230 -9606 100129352 LOC100129352 - - - 9 9q34.11 protein PAT1 homolog 1-like pseudo - - - - 20121230 -9606 100129354 NRADDP - - HGNC:19337 3 3p21.31 neurotrophin receptor associated death domain, pseudogene pseudo NRADDP neurotrophin receptor associated death domain, pseudogene O - 20121230 -9606 100129355 LOC100129355 - - - 18 18p11.31 biorientation of chromosomes in cell division 1 pseudogene pseudo - - - - 20121230 -9606 100129357 RPL9P29 - RPL9_17_1576 HGNC:35533 17 17q25.3 ribosomal protein L9 pseudogene 29 pseudo RPL9P29 ribosomal protein L9 pseudogene 29 O - 20121230 -9606 100129358 LOC100129358 - - - 22 22q11.23 kelch-like 5 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100129361 LOC100129361 - - - 12 12p13.2 chromosome X open reading frame 69-like protein-coding - - - uncharacterized protein LOC100129361 20121230 -9606 100129363 LOC100129363 - - - 15 15q26.1 uncharacterized LOC100129363 protein-coding - - - - 20120511 -9606 100129367 LOC100129367 - - - 8 8q24.23 nucleolar and coiled-body phosphoprotein 1 pseudogene pseudo - - - - 20121230 -9606 100129368 LOC100129368 - - - X Xq27.3 heterogeneous nuclear ribonucleoprotein H-like pseudo - - - - 20121230 -9606 100129370 LOC100129370 - - - 8 8q23.2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa pseudogene pseudo - - - - 20121230 -9606 100129373 LOC100129373 - - - X Xq28 uncharacterized LOC100129373 unknown - - - - 20120511 -9606 100129374 RPL18P3 - RPL18_2_608 HGNC:35783 5 5q23.1 ribosomal protein L18 pseudogene 3 pseudo RPL18P3 ribosomal protein L18 pseudogene 3 O - 20121230 -9606 100129375 LOC100129375 - - - 2 2q22.1 ring finger protein 14 pseudogene pseudo - - - - 20121230 -9606 100129377 RPL23P9 - RPL23_3_937 HGNC:36853 8 8q22.3 ribosomal protein L23 pseudogene 9 pseudo RPL23P9 ribosomal protein L23 pseudogene 9 O - 20121230 -9606 100129379 RPS29P17 - RPS29_13_976 HGNC:35479 9 9p13.3 ribosomal protein S29 pseudogene 17 pseudo RPS29P17 ribosomal protein S29 pseudogene 17 O - 20121230 -9606 100129380 LOC100129380 - - - 12 12q24.31 uncharacterized LOC100129380 protein-coding - - - - 20120511 -9606 100129381 LOC100129381 - - - 1 1p36.33 ribosomal protein S7 pseudogene pseudo - - - - 20121230 -9606 100129382 PRKRIRP4 - - HGNC:39568 11 11p14.3 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 4 pseudo PRKRIRP4 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 4 O - 20121230 -9606 100129384 LOC100129384 - - - 11 11p11.12 ankyrin repeat domain-containing protein 33B-like pseudo - - - - 20121230 -9606 100129385 C9orf92 - Em:AL513424.1 HGNC:19054 9 9p22.3 chromosome 9 open reading frame 92 protein-coding C9orf92 chromosome 9 open reading frame 92 O putative uncharacterized protein C9orf92 20121201 -9606 100129387 GABPB1-AS1 - - HGNC:44157 15 15q21.2 GABPB1 antisense RNA 1 miscRNA GABPB1-AS1 GABPB1 antisense RNA 1 O - 20121230 -9606 100129391 LOC100129391 - - - 19 19p13.2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 pseudogene pseudo - - - - 20121230 -9606 100129393 LOC100129393 - - - 15 15q15.1 uncharacterized LOC100129393 protein-coding - - - - 20120511 -9606 100129394 RPL12P42 - RPL12_15_1630 HGNC:36165 19 19p13.2 ribosomal protein L12 pseudogene 42 pseudo RPL12P42 ribosomal protein L12 pseudogene 42 O - 20121230 -9606 100129395 LOC100129395 - - - 17 17q12 NS5ATP13TP1 unknown - - - - 20121117 -9606 100129396 FAM106CP - FAM106C HGNC:38396 17 17p11.2 family with sequence similarity 106, member C pseudogene pseudo FAM106CP family with sequence similarity 106, member C, pseudogene O - 20121230 -9606 100129397 LOC100129397 - - - 15 15q21.1 uncharacterized LOC100129397 protein-coding - - - - 20120511 -9606 100129398 LPGAT1P1 - FAM34A2P|FAM34BP HGNC:31402 8 8p12 lysophosphatidylglycerol acyltransferase 1 pseudogene 1 pseudo LPGAT1P1 lysophosphatidylglycerol acyltransferase 1 pseudogene 1 O - 20121230 -9606 100129399 LOC100129399 - - - 6 6q21 uncharacterized LOC100129399 protein-coding - - - - 20120511 -9606 100129401 LYPLA1P1 - - HGNC:44005 7 7q31.32 lysophospholipase I pseudogene 1 pseudo LYPLA1P1 lysophospholipase I pseudogene 1 O - 20121230 -9606 100129402 HAUS4P1 - - HGNC:43763 1 1q24.2 HAUS augmin-like complex, subunit 4 pseudogene 1 pseudo HAUS4P1 HAUS augmin-like complex, subunit 4 pseudogene 1 O - 20121230 -9606 100129403 EEF1GP4 - - HGNC:44559 3 3q26.1 eukaryotic translation elongation factor 1 gamma pseudogene 4 pseudo EEF1GP4 eukaryotic translation elongation factor 1 gamma pseudogene 4 O - 20121230 -9606 100129404 LOC100129404 - - - 8 8p21.2 matrix metallopeptidase 12 (macrophage elastase) pseudogene pseudo - - - - 20121230 -9606 100129405 MSTO2P - MSTO2 HGNC:26329 1 1q22 misato homolog 2 pseudogene pseudo MSTO2P misato homolog 2 pseudogene O - 20121230 -9606 100129406 LOC100129406 - - - 1 1p13.2 uncharacterized LOC100129406 protein-coding - - - - 20121117 -9606 100129407 LINC00684 - DMRTC1-AS1 HGNC:44268 X Xq13.2 long intergenic non-protein coding RNA 684 miscRNA LINC00684 long intergenic non-protein coding RNA 684 O - 20121230 -9606 100129408 LOC100129408 - - - 18 18q21.31 uncharacterized LOC100129408 protein-coding - - - - 20120511 -9606 100129418 RPL31P16 - RPL31_3_207 HGNC:36001 2 2p22.2 ribosomal protein L31 pseudogene 16 pseudo RPL31P16 ribosomal protein L31 pseudogene 16 O - 20121230 -9606 100129421 RPL18P2 - RPL18_1_137 HGNC:35759 1 1q25.3 ribosomal protein L18 pseudogene 2 pseudo RPL18P2 ribosomal protein L18 pseudogene 2 O - 20121230 -9606 100129422 LOC100129422 - - - 6 6q22.31 LSM14A, SCD6 homolog A (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100129423 EI24P1 - - HGNC:44586 3 3q26.32 etoposide induced 2.4 pseudogene 1 pseudo EI24P1 etoposide induced 2.4 pseudogene 1 O - 20121230 -9606 100129424 RPL19P12 - RPL19_4_829 HGNC:36047 7 7q22.1 ribosomal protein L19 pseudogene 12 pseudo RPL19P12 ribosomal protein L19 pseudogene 12 O - 20121230 -9606 100129427 LOC100129427 - - - 7 7p12.2 uncharacterized LOC100129427 miscRNA - - - - 20121230 -9606 100129428 RANP5 - - HGNC:39860 1 1p13.3 RAN, member RAS oncogene family pseudogene 5 pseudo RANP5 RAN, member RAS oncogene family pseudogene 5 O - 20121230 -9606 100129434 LOC100129434 - - - 2 2p16.1 uncharacterized LOC100129434 unknown - - - - 20121230 -9606 100129438 ZFRP1 - - HGNC:38030 X Xq11.1 zinc finger RNA binding protein pseudogene 1 pseudo ZFRP1 zinc finger RNA binding protein pseudogene 1 O - 20121230 -9606 100129447 LOC100129447 - - - 12 12q24.13 uncharacterized LOC100129447 protein-coding - - - - 20120511 -9606 100129449 LOC100129449 - - - 2 2q23.3 PRO2055 unknown - - - - 20120710 -9606 100129452 GAMTP2 - - HGNC:37697 13 13q13.2 guanidinoacetate N-methyltransferase pseudogene 2 pseudo GAMTP2 guanidinoacetate N-methyltransferase pseudogene 2 O - 20121230 -9606 100129454 SNRPEP1 - - HGNC:35244 5 5q33.3 small nuclear ribonucleoprotein polypeptide E pseudogene 1 pseudo SNRPEP1 small nuclear ribonucleoprotein polypeptide E pseudogene 1 O - 20121230 -9606 100129455 LOC100129455 - - - 2 2q31.1 uncharacterized LOC100129455 unknown - - - - 20120710 -9606 100129456 LOC100129456 - - - 2 2q31.1 heat shock protein 90kDa alpha (cytosolic), class B member 1 pseudogene pseudo - - - - 20121230 -9606 100129457 LOC100129457 - - - 5 5q35.3 coiled-coil domain containing 86 pseudogene pseudo - - - - 20121230 -9606 100129459 PWWP2AP1 - - HGNC:39709 13 13q31.1 PWWP domain containing 2A pseudogene 1 pseudo PWWP2AP1 PWWP domain containing 2A pseudogene 1 O - 20121230 -9606 100129460 DPY19L1P1 - - HGNC:22395 7 7p14.3 dpy-19-like 1 pseudogene 1 (C. elegans) pseudo DPY19L1P1 dpy-19-like 1 pseudogene 1 (C. elegans) O - 20121230 -9606 100129461 LOC100129461 - - - 6 6p25.1 uncharacterized LOC100129461 unknown - - - - 20121230 -9606 100129464 CXorf28 - - HGNC:27336|Vega:OTTHUMG00000021082 X Xp22.33 chromosome X open reading frame 28 miscRNA CXorf28 chromosome X open reading frame 28 O - 20121230 -9606 100129468 LOC100129468 - - - 18 18p11.31 biorientation of chromosomes in cell division 1 pseudogene pseudo - - - - 20121230 -9606 100129471 LOC100129471 - - - 11 11q22.1 plastin 1 pseudogene pseudo - - - - 20121230 -9606 100129472 PTP4A1P6 - - HGNC:41933 11 11q14.2 protein tyrosine phosphatase type IVA, member 1 pseudogene 6 pseudo PTP4A1P6 protein tyrosine phosphatase type IVA, member 1 pseudogene 6 O - 20121230 -9606 100129473 LOC100129473 - - - 11 11q12.2 uncharacterized LOC100129473 unknown - - - - 20121230 -9606 100129476 LOC100129476 - - - 1 1p36.31 uncharacterized LOC100129476 unknown - - - - 20121230 -9606 100129478 LOC100129478 - - - 16 16p13.3 chromosome 4 open reading frame 46 pseudogene pseudo - - - - 20121230 -9606 100129480 LOC100129480 - - Ensembl:ENSG00000225526|Vega:OTTHUMG00000155368 3 3p25.2 uncharacterized LOC100129480 protein-coding - - - uncharacterized protein LOC100129480 20121230 -9606 100129482 ZNF37BP hCG_1770448 KOX21|ZNF37B HGNC:13103 10 10q11.21 zinc finger protein 37B, pseudogene pseudo ZNF37BP zinc finger protein 37B, pseudogene O - 20121230 -9606 100129483 LOC100129483 - - - X Xp22.2 solute carrier family 35, member C2 pseudogene pseudo - - - - 20121230 -9606 100129484 LOC100129484 - - - 7 7p22.1 uncharacterized LOC100129484 unknown - - - - 20121230 -9606 100129487 RPL24P9 - - - X Xp22.33 ribosomal protein L24 pseudogene pseudo - - - - 20121230 -9606 100129492 LOC100129492 - - - 1 1p34.1 small nuclear ribonucleoprotein Sm D1 pseudogene pseudo - - - - 20121230 -9606 100129497 LOC100129497 - - - 1 1p34.3 methyltransferase like 21D pseudogene pseudo - - - - 20121230 -9606 100129498 LOC100129498 - - - 11 11q23.3 uncharacterized LOC100129498 unknown - - - - 20120511 -9606 100129502 LOC100129502 - - - 15 15q26.1 uncharacterized LOC100129502 miscRNA - - - uncharacterized protein LOC100129502 20120726 -9606 100129503 PP13 - - - 17 17q25.3 uncharacterized LOC100129503 unknown - - - - 20121230 -9606 100129507 LOC100129507 - - - 19 19q12 mannosidase, alpha, class 1A, member 2 pseudogene pseudo - - - - 20121230 -9606 100129512 LOC100129512 - - - 8 8q22.3 POU class 5 homeobox 1 pseudogene pseudo - - - - 20121230 -9606 100129515 LINC00633 - - HGNC:44269 X Xq26.3 long intergenic non-protein coding RNA 633 miscRNA LINC00633 long intergenic non-protein coding RNA 633 O - 20121230 -9606 100129516 LOC100129516 - - - 3 3q29 uncharacterized LOC100129516 unknown - - - - 20121230 -9606 100129517 RPL26P23 - RPL26_13_865 HGNC:36634 7 7q36.3 ribosomal protein L26 pseudogene 23 pseudo RPL26P23 ribosomal protein L26 pseudogene 23 O - 20121230 -9606 100129518 LOC100129518 - - - 6 6q25.3 uncharacterized LOC100129518 miscRNA - - - - 20121230 -9606 100129520 LOC100129520 - - - X Xq25 testis expressed sequence 13-like protein-coding - - - uncharacterized protein LOC100129520 20121230 -9606 100129526 LOC100129526 - - - 5 5q23.1 protein tyrosine phosphatase, receptor type, D pseudogene pseudo - - - - 20121230 -9606 100129527 LOC100129527 - - - 8 8q13.3 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100129528 MUC8 - - HGNC:7519|MIM:601932 12 12q24.33 mucin 8 protein-coding MUC8 mucin 8 O mucin 8, tracheobronchial 20121230 -9606 100129534 LOC100129534 - - - 1 1p36.33 small nuclear ribonucleoprotein polypeptide N pseudogene pseudo - - - - 20121230 -9606 100129540 LOC100129540 - - - 15 15q25.1 uncharacterized LOC100129540 unknown - - - - 20121230 -9606 100129542 RPS29P21 - RPS29_16_1562 HGNC:36479 17 17q23.1 ribosomal protein S29 pseudogene 21 pseudo RPS29P21 ribosomal protein S29 pseudogene 21 O - 20121230 -9606 100129543 ZNF730 - - HGNC:32470|Ensembl:ENSG00000183850 19 19p12 zinc finger protein 730 protein-coding ZNF730 zinc finger protein 730 O - 20121230 -9606 100129550 LOC100129550 - - - 3 3q21.1 uncharacterized LOC100129550 miscRNA - - - - 20121230 -9606 100129552 RPS26P38 - RPS26_15_1076 HGNC:36406 10 10q23.2 ribosomal protein S26 pseudogene 38 pseudo RPS26P38 ribosomal protein S26 pseudogene 38 O - 20121230 -9606 100129553 RPL13AP16 - RPL13A_7_832 HGNC:35722 7 7q22.3 ribosomal protein L13a pseudogene 16 pseudo RPL13AP16 ribosomal protein L13a pseudogene 16 O - 20121230 -9606 100129554 LOC100129554 - - - 6 6q24.1 thyroid hormone receptor interactor 4 pseudogene pseudo - - - - 20121230 -9606 100129555 HMGN1P7 - - HGNC:39350 3 3q11.2 high mobility group nucleosome binding domain 1 pseudogene 7 pseudo HMGN1P7 high mobility group nucleosome binding domain 1 pseudogene 7 O - 20121230 -9606 100129556 RPS10P27 - RPS10_12_1588 HGNC:36850 18 18q11.2 ribosomal protein S10 pseudogene 27 pseudo RPS10P27 ribosomal protein S10 pseudogene 27 O - 20121230 -9606 100129557 LOC100129557 - - - 3 3p12.2 heterogeneous nuclear ribonucleoprotein A1-like pseudo - - - - 20121230 -9606 100129561 MYL6P3 - - HGNC:37812 10 10q21.3 myosin, light chain 6 pseudogene 3 pseudo MYL6P3 myosin, light chain 6 pseudogene 3 O - 20121230 -9606 100129564 PTP4A1P4 - - HGNC:41931 5 5q14.3 protein tyrosine phosphatase type IVA, member 1 pseudogene 4 pseudo PTP4A1P4 protein tyrosine phosphatase type IVA, member 1 pseudogene 4 O - 20121230 -9606 100129566 LOC100129566 - - - 5 5q13.3 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100129570 PEBP1P3 - - HGNC:44345 1 1q31.3 phosphatidylethanolamine binding protein 1 pseudogene 3 pseudo PEBP1P3 phosphatidylethanolamine binding protein 1 pseudogene 3 O - 20121230 -9606 100129572 LOC100129572 - - - 4 4q31.23 uncharacterized LOC100129572 protein-coding - - - - 20120511 -9606 100129573 LOC100129573 - - - 1 1q25.3 tRNA methyltransferase 2 homolog B (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100129574 LOC100129574 - - - 5 5q11.2 chromosome 12 open reading frame 29 pseudogene pseudo - - - - 20121230 -9606 100129575 MR1P1 - MR1B - 1 1q25.3 major histocompatibility complex, class I-related pseudogene pseudo - - - - 20121230 -9606 100129577 LOC100129577 - - - 6 6q23.3 mitochondrial carrier 1 pseudogene pseudo - - - - 20121230 -9606 100129581 LOC100129581 - - - 2 2p25.1 uncharacterized LOC100129581 unknown - - - - 20120511 -9606 100129583 FAM47E hCG_23000 - HGNC:34343|Ensembl:ENSG00000189157|Vega:OTTHUMG00000160966 4 4q21.1 family with sequence similarity 47, member E protein-coding FAM47E family with sequence similarity 47, member E O protein FAM47E 20121230 -9606 100129584 RPL17P44 - RPL17_28_1610 HGNC:36396 18 18q21.33 ribosomal protein L17 pseudogene 44 pseudo RPL17P44 ribosomal protein L17 pseudogene 44 O - 20121230 -9606 100129586 LOC100129586 - - - 1 1q21.2 ubiquitin-conjugating enzyme E2D 4 (putative) pseudogene pseudo - - - - 20121230 -9606 100129587 VN1R34P - - HGNC:37354 7 7q11.21 vomeronasal 1 receptor 34 pseudogene pseudo VN1R34P vomeronasal 1 receptor 34 pseudogene O - 20121230 -9606 100129589 LOC100129589 - - - 12 12q21.31 TM2 domain containing 3 pseudogene pseudo - - - - 20121230 -9606 100129591 RPL29P24 - RPL29_16_1290 HGNC:35616 12 12q24.31 ribosomal protein L29 pseudogene 24 pseudo RPL29P24 ribosomal protein L29 pseudogene 24 O - 20121230 -9606 100129594 FAM8A3P - - HGNC:16374 2 2q23.2 family with sequence similarity 8, member A1 pseudogene pseudo FAM8A3P family with sequence similarity 8, member A3 pseudogene O - 20121230 -9606 100129595 PRUNEP1 RP11-380N8.1 - HGNC:39723 13 13q12.13 prune homolog (Drosophila) pseudogene 1 pseudo PRUNEP1 prune homolog (Drosophila) pseudogene 1 O - 20121230 -9606 100129596 LOC100129596 - - - 8 8q24.3 uncharacterized LOC100129596 unknown - - - - 20121230 -9606 100129597 LINC00462 - - HGNC:42811 13 13q14.2 long intergenic non-protein coding RNA 462 miscRNA LINC00462 long intergenic non-protein coding RNA 462 O - 20121230 -9606 100129599 RPS29P14 - RPS29_3_802 HGNC:36471 7 7p14.3 ribosomal protein S29 pseudogene 14 pseudo RPS29P14 ribosomal protein S29 pseudogene 14 O - 20121230 -9606 100129601 LOC100129601 - - - 9 9q21.13 cell division cycle associated 7 pseudogene pseudo - - - - 20121230 -9606 100129603 LOC100129603 tcag7.935 - - 7 7p22.2 uncharacterized LOC100129603 miscRNA - - - - 20120511 -9606 100129604 PABPC1P12 - - HGNC:37994 10 10p11.1 poly(A) binding protein, cytoplasmic 1 pseudogene 12 pseudo PABPC1P12 poly(A) binding protein, cytoplasmic 1 pseudogene 12 O - 20121230 -9606 100129606 LOC100129606 - - - 7 7p15.2 heterogeneous nuclear ribonucleoprotein A1-like pseudo - - - - 20121209 -9606 100129607 LOC100129607 - - - 11 11q12.1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) pseudogene pseudo - - - - 20121230 -9606 100129611 LOC100129611 - - - 1 1p36.21 PRAME family member 17-like pseudo - - - - 20121209 -9606 100129616 LOC100129616 - - - 6 6p22.3 putative UPF0607 protein ENSP00000332738-like pseudo - - - - 20121230 -9606 100129617 LOC100129617 - - - 16 16q23.2 uncharacterized LOC100129617 miscRNA - - - - 20121230 -9606 100129618 THAP5P2 - - HGNC:44502 3 3p24.3 THAP domain containing 5 pseudogene 2 pseudo THAP5P2 THAP domain containing 5 pseudogene 2 O - 20121230 -9606 100129620 LOC100129620 - - - 1 1p21.3 uncharacterized LOC100129620 miscRNA - - - - 20121230 -9606 100129622 RSU1P1 AL022344.6 Y214H10.6 HGNC:31114 10 10q11.21 Ras suppressor protein 1 pseudogene 1 pseudo RSU1P1 Ras suppressor protein 1 pseudogene 1 O - 20121230 -9606 100129626 LOC100129626 - - - 6 6p25.2 translocase of outer mitochondrial membrane 5 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100129627 PPP1R1AP2 - - HGNC:16317 16 16p11.1 protein phosphatase 1, regulatory (inhibitor) subunit 1A pseudogene 2 pseudo PPP1R1AP2 protein phosphatase 1, regulatory (inhibitor) subunit 1A pseudogene 2 O - 20121230 -9606 100129629 EIF2S2P6 - - HGNC:37794 11 11q14.1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 6 pseudo EIF2S2P6 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 6 O - 20121230 -9606 100129631 IGHV2OR16-5 - IGHV2OR165 HGNC:5579|IMGT/GENE-DB:IGHV2/OR16-5 16 16p11.2 immunoglobulin heavy variable 2/OR16-5 (non-functional) pseudo IGHV2OR16-5 immunoglobulin heavy variable 2/OR16-5 (non-functional) O - 20121230 -9606 100129634 RPL9P19 - RPL9_4_783 HGNC:36688 7 7p21.3 ribosomal protein L9 pseudogene 19 pseudo RPL9P19 ribosomal protein L9 pseudogene 19 O - 20121230 -9606 100129636 LOC100129636 - - - 6 6p22.1 uncharacterized LOC100129636 protein-coding - - - uncharacterized protein LOC100129636 20121230 -9606 100129637 LOC100129637 - - - 16 16q24.2 uncharacterized LOC100129637 unknown - - - - 20120815 -9606 100129640 LOC100129640 - - - 12 12p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 pseudogene pseudo - - - - 20121230 -9606 100129641 BTG1P1 - - HGNC:37692 12 12p13.31 B-cell translocation gene 1 pseudogene 1 pseudo BTG1P1 B-cell translocation gene 1 pseudogene 1 O - 20121230 -9606 100129643 POM121L11P - - HGNC:35447 22 22q11.23 POM121 transmembrane nucleoporin-like 11, pseudogene pseudo POM121L11P POM121 transmembrane nucleoporin-like 11, pseudogene O - 20121230 -9606 100129645 RPL18P9 - RPL18_3_1196 HGNC:36766 12 12p13.32 ribosomal protein L18 pseudogene 9 pseudo RPL18P9 ribosomal protein L18 pseudogene 9 O - 20121230 -9606 100129646 LOC100129646 - - - 12 12p11.22 intraflagellar transport 57 homolog (Chlamydomonas) pseudogene pseudo - - - - 20121230 -9606 100129647 RPL5P35 - RPL5_16_1760 HGNC:36967 22 22q13.33 ribosomal protein L5 pseudogene 35 pseudo RPL5P35 ribosomal protein L5 pseudogene 35 O - 20121230 -9606 100129648 LOC100129648 - - - 22 22q13.2 uncharacterized LOC100129648 unknown - - - - 20120511 -9606 100129649 PGDP2 - - HGNC:39144 12 12q21.2 phosphogluconate dehydrogenase pseudogene 2 pseudo PGDP2 phosphogluconate dehydrogenase pseudogene 2 O - 20121230 -9606 100129650 RPS26P55 - RPS26_30_1651 HGNC:36500 19 19q13.11 ribosomal protein S26 pseudogene 55 pseudo RPS26P55 ribosomal protein S26 pseudogene 55 O - 20121230 -9606 100129654 TCF24 - TCF-24|bHLHa25 HGNC:32275|Ensembl:ENSG00000261787|Vega:OTTHUMG00000177282 8 8q13.1 transcription factor 24 protein-coding TCF24 transcription factor 24 O - 20121230 -9606 100129657 RPL17P18 - RPL17_5_454 HGNC:36538 3 3q29 ribosomal protein L17 pseudogene 18 pseudo RPL17P18 ribosomal protein L17 pseudogene 18 O - 20121230 -9606 100129661 LOC100129661 - - - X Xq28 HCLS1 associated protein X-1 pseudogene pseudo - - - - 20121230 -9606 100129662 FGF13-AS1 - - HGNC:44264 X Xq26.3 FGF13 antisense RNA 1 miscRNA FGF13-AS1 FGF13 antisense RNA 1 O - 20121230 -9606 100129664 LOC100129664 - - - 1 1q41 slowmo homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100129667 LOC100129667 - - - 8 8q11.23 chromosome 5 open reading frame 13 pseudogene pseudo - - - - 20121230 -9606 100129669 IZUMO3 RP11-20A20.1 C9orf134|bA20A20.1 HGNC:31421|Ensembl:ENSG00000205442|Vega:OTTHUMG00000019704 9 9p21.3 IZUMO family member 3 protein-coding IZUMO3 IZUMO family member 3 O izumo sperm-egg fusion protein 3 20121230 -9606 100129670 RPL18P8 - RPL18_5_1138 HGNC:36878 11 11p12 ribosomal protein L18 pseudogene 8 pseudo RPL18P8 ribosomal protein L18 pseudogene 8 O - 20121230 -9606 100129672 LOC100129672 - - - 11 11p11.12 Cdon homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100129675 LOC100129675 - - - 2 2q37.3 uncharacterized LOC100129675 unknown - - - - 20120511 -9606 100129682 LOC100129682 - - - 19 19p13.2 ribosomal protein L17 pseudogene pseudo - - - - 20121230 -9606 100129683 LOC100129683 - - - 17 17p11.1 WEE1 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100129685 RPL21P125 - RPL21_55_1506 HGNC:36039 17 17p13.2 ribosomal protein L21 pseudogene 125 pseudo RPL21P125 ribosomal protein L21 pseudogene 125 O - 20121230 -9606 100129687 LOC100129687 - - - 15 15q13.1 chromosome 16 open reading frame 61 pseudogene pseudo - - - - 20121230 -9606 100129690 LOC100129690 - - - 1 1q23.1-q23.2 RAD1 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100129692 EIF4BP9 - - HGNC:37942 X Xq12 eukaryotic translation initiation factor 4B pseudogene 9 pseudo EIF4BP9 eukaryotic translation initiation factor 4B pseudogene 9 O - 20121230 -9606 100129693 LOC100129693 - - - 4 4q22.1 mitochondrial ribosomal protein L19 pseudogene pseudo - - - - 20121230 -9606 100129694 R3HDM2P2 - - HGNC:44057 6 6q16.3 R3H domain containing 2 pseudogene 2 pseudo R3HDM2P2 R3H domain containing 2 pseudogene 2 O - 20121230 -9606 100129696 TFP1 - TFP HGNC:11759 3 3q22.1 transferrin pseudogene 1 pseudo TFP1 transferrin pseudogene 1 O - 20121230 -9606 100129697 LOC100129697 - - - 16 16q24.3 uncharacterized LOC100129697 unknown - - - - 20121230 -9606 100129703 NAG20 - - - 7 7q33 NAG20 unknown - - - - 20121230 -9606 100129706 HMGB1P13 - HMGB1L13 HGNC:13318 6 6q23.2 high mobility group box 1 pseudogene 13 pseudo HMGB1P13 high mobility group box 1 pseudogene 13 O - 20121230 -9606 100129707 LOC100129707 - - - 3 3q13.33 presenilin associated, rhomboid-like pseudogene pseudo - - - - 20121230 -9606 100129708 IPO7P1 - - HGNC:39837 X Xp11.22 importin 7 pseudogene 1 pseudo IPO7P1 importin 7 pseudogene 1 O - 20121230 -9606 100129714 RCC2P8 - - HGNC:42384 4 4q25 regulator of chromosome condensation 2 pseudogene 8 pseudo RCC2P8 regulator of chromosome condensation 2 pseudogene 8 O - 20121230 -9606 100129716 ARRDC3-AS1 - - HGNC:44145 5 5q14.3 ARRDC3 antisense RNA 1 miscRNA ARRDC3-AS1 ARRDC3 antisense RNA 1 O - 20121230 -9606 100129717 LOC100129717 - - - 8 8p21.2 uncharacterized LOC100129717 unknown - - - - 20120815 -9606 100129718 RPS13P3 - RPS13_3_211 HGNC:36866 2 2p21 ribosomal protein S13 pseudogene 3 pseudo RPS13P3 ribosomal protein S13 pseudogene 3 O - 20121230 -9606 100129721 LOC100129721 - - - 10 10q21.1 uncharacterized LOC100129721 protein-coding - - - - 20120511 -9606 100129722 LOC100129722 - - - 9 9q34.3 uncharacterized LOC100129722 miscRNA - - - - 20121230 -9606 100129723 HMGB1P12 - HMGB1L12 HGNC:13317 X Xq23 high mobility group box 1 pseudogene 12 pseudo HMGB1P12 high mobility group box 1 pseudogene 12 O - 20121230 -9606 100129724 LOC100129724 - - - 2 2p23.3 uncharacterized LOC100129724 unknown - - - - 20120511 -9606 100129725 LOC100129725 - - - 3 3q28 PERP, TP53 apoptosis effector pseudogene pseudo - - - - 20121230 -9606 100129726 LOC100129726 - - - 2 2p21 uncharacterized LOC100129726 miscRNA - - - - 20121230 -9606 100129727 TMED10P2 - - HGNC:38105 3 3q21.3 transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 2 pseudo TMED10P2 transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 2 O - 20121230 -9606 100129728 LOC100129728 - - - 4 4q12 nucleic acid binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100129731 LOC100129731 - - - 10 10q23.33 RAB11A, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100129732 RPS6P15 - RPS6_7_1097 HGNC:36942 10 10q25.2 ribosomal protein S6 pseudogene 15 pseudo RPS6P15 ribosomal protein S6 pseudogene 15 O - 20121230 -9606 100129734 LOC100129734 - - - 1 1q25.2 zinc finger, AN1-type domain 1 pseudogene pseudo - - - - 20121230 -9606 100129736 CDV3P1 - - HGNC:42387 3 3q11.2 CDV3 homolog (mouse) pseudogene 1 pseudo CDV3P1 CDV3 homolog (mouse) pseudogene 1 O - 20121230 -9606 100129738 SETP9 - - HGNC:42928 1 1q23.3 SET pseudogene 9 pseudo SETP9 SET pseudogene 9 O - 20121230 -9606 100129739 LOC100129739 - - - 12 12q24.13 dynein, light chain, LC8-type 1 pseudogene pseudo - - - - 20121230 -9606 100129742 RPS3AP13 - - - 2 2q24.2 ribosomal protein S3A pseudogene pseudo - - - - 20121230 -9606 100129743 RPL7P14 - RPL7_5_313 HGNC:35984 2 2q33.2 ribosomal protein L7 pseudogene 14 pseudo RPL7P14 ribosomal protein L7 pseudogene 14 O - 20121230 -9606 100129755 RSL24D1P1 - RPL24p|RPL30BP|RSL24D1P|dJ97D16.2 HGNC:13979 6 6p22.1 ribosomal L24 domain containing 1 pseudogene 1 pseudo RSL24D1P1 ribosomal L24 domain containing 1 pseudogene 1 O - 20121230 -9606 100129761 LOC100129761 - - - 6 6p24.1 adenosylmethionine decarboxylase 1 pseudogene pseudo - - - - 20121230 -9606 100129763 LOC100129763 - - - 4 4p16.1 uncharacterized LOC100129763 protein-coding - - - - 20120511 -9606 100129769 AKR1B1P6 - - HGNC:33498 18 18p11.22 aldo-keto reductase family 1, member B1 pseudogene 6 pseudo AKR1B1P6 aldo-keto reductase family 1, member B1 pseudogene 6 O - 20121230 -9606 100129772 TMPOP1 - Em:AB014080.3|TMPOL1 HGNC:21364 6 6p21.33 thymopoietin pseudogene 1 pseudo TMPOP1 thymopoietin pseudogene 1 O - 20121230 -9606 100129774 LOC100129774 - - - 18 18p11.32 ATPase family, AAA domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100129775 LOC100129775 - - - 11 11q13.5 uncharacterized LOC100129775 protein-coding - - - - 20121018 -9606 100129776 LOC100129776 - - - 1 1p36.23 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa pseudogene pseudo - - - - 20121230 -9606 100129777 BNIP3P6 - - HGNC:39659 14 14q11.2 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 6 pseudo BNIP3P6 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 6 O - 20121209 -9606 100129779 LOC100129779 - - - 11 11q13.3 DnaJ (Hsp40) homolog, subfamily B, member 7 pseudogene pseudo - - - - 20121230 -9606 100129781 LOC100129781 - - - 16 16p13.12 uncharacterized LOC100129781 miscRNA - - - - 20121209 -9606 100129782 ATP5A1P4 - ATP5AP4 HGNC:23563 14 14q23.2 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 4 pseudo ATP5A1P4 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 4 O - 20121230 -9606 100129784 RPL17P26 - RPL17_14_707 HGNC:35597 6 6p12.1 ribosomal protein L17 pseudogene 26 pseudo RPL17P26 ribosomal protein L17 pseudogene 26 O - 20121230 -9606 100129785 LOC100129785 - - - 9 9q34.11 uncharacterized LOC100129785 protein-coding - - - - 20120511 -9606 100129792 CCDC152 Chr5_400 CH5400 HGNC:34438|Ensembl:ENSG00000198865|Vega:OTTHUMG00000162141 5 5p12 coiled-coil domain containing 152 protein-coding CCDC152 coiled-coil domain containing 152 O coiled-coil domain-containing protein 152 20121230 -9606 100129793 TLK1P1 - TLK1P|TLK1ps HGNC:28608 9 9q33.2 tousled-like kinase 1 pseudogene 1 pseudo TLK1P1 tousled-like kinase 1 pseudogene 1 O - 20121230 -9606 100129794 LOC100129794 - - - 14 14q13.3 uncharacterized LOC100129794 miscRNA - - - - 20121230 -9606 100129795 LOC100129795 - - - 11 11q13.4 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100129796 RPL13P13 - RPL13_5_1672 HGNC:36832 19 19q13.43 ribosomal protein L13 pseudogene 13 pseudo RPL13P13 ribosomal protein L13 pseudogene 13 O - 20121230 -9606 100129799 RPL13AP21 - RPL13A_10_1231 HGNC:35654 12 12q12 ribosomal protein L13a pseudogene 21 pseudo RPL13AP21 ribosomal protein L13a pseudogene 21 O - 20121230 -9606 100129800 ZNF807 - ZNF181P1|ZNF807P HGNC:33229 19 19q13.11 zinc finger protein 807 unknown ZNF807 zinc finger protein 807 O - 20121230 -9606 100129801 RPL12P37 - RPL12_18_1579 HGNC:35565 17 17q25.3 ribosomal protein L12 pseudogene 37 pseudo RPL12P37 ribosomal protein L12 pseudogene 37 O - 20121230 -9606 100129808 RPL24P6 - RPL24_3_450 HGNC:36637 3 3q29 ribosomal protein L24 pseudogene 6 pseudo RPL24P6 ribosomal protein L24 pseudogene 6 O - 20121230 -9606 100129813 LOC100129813 - - - X Xq26.3 cancer/testis antigen family 45, member A5 pseudogene pseudo - - - - 20121230 -9606 100129815 PGAM1P13 - - HGNC:42461 8 8q23.1 phosphoglycerate mutase 1 pseudogene 13 pseudo PGAM1P13 phosphoglycerate mutase 1 pseudogene 13 O - 20121230 -9606 100129818 LOC100129818 - - - X Xq23 tubulin, alpha 1a pseudogene pseudo - - - - 20121230 -9606 100129819 RPL22P7 - RPL22_4_275 HGNC:35602 2 2q21.1 ribosomal protein L22 pseudogene 7 pseudo RPL22P7 ribosomal protein L22 pseudogene 7 O - 20121230 -9606 100129824 PIP5K1P2 - - HGNC:38068 7 7q36.3 phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 2 pseudo PIP5K1P2 phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 2 O - 20121230 -9606 100129827 MRVI1-AS1 - - HGNC:43434 11 11p15.4 MRVI1 antisense RNA 1 miscRNA MRVI1-AS1 MRVI1 antisense RNA 1 O - 20121230 -9606 100129830 LOC100129830 - - - 15 15q21.1 5-azacytidine induced 2 pseudogene pseudo - - - - 20121230 -9606 100129831 LOC100129831 UNQ6493 - - 19 19p13.3 EPWW6493 unknown - - - - 20121230 -9606 100129836 COL4A2-AS2 - - HGNC:39849 13 13q34 COL4A2 antisense RNA 2 unknown COL4A2-AS2 COL4A2 antisense RNA 2 O uncharacterized protein LOC100129836 20121222 -9606 100129840 LOC100129840 - - - 15 15q23 uncharacterized LOC100129840 protein-coding - - - - 20120511 -9606 100129842 ZNF737 - ZNF102 HGNC:32468|MIM:603984|Ensembl:ENSG00000237440|Vega:OTTHUMG00000179732 19 19p12 zinc finger protein 737 protein-coding ZNF737 zinc finger protein 737 O zinc finger protein 102 (Y3) 20121230 -9606 100129843 LOC100129843 - - - X Xq21.1 pyruvate dehydrogenase kinase, isozyme 1 pseudogene pseudo - - - - 20121230 -9606 100129844 LOC100129844 - - - 6 6q24.1 DnaJ (Hsp40) homolog, subfamily C, member 7 pseudogene pseudo - - - - 20121230 -9606 100129845 PCOLCE-AS1 - - HGNC:40430 7 7q22.1 PCOLCE antisense RNA 1 miscRNA PCOLCE-AS1 PCOLCE antisense RNA 1 O - 20121230 -9606 100129846 LOC100129846 - - - 8 8p12 uncharacterized LOC100129846 protein-coding - - - - 20120511 -9606 100129847 LOC100129847 - - - 6 6q15 ras homolog family member A pseudogene pseudo - - - - 20121230 -9606 100129851 LOC100129851 - - - X Xp11.4 claudin 7 pseudogene pseudo - - - - 20121230 -9606 100129852 LOC100129852 RP3-439I14.1 - - 6 6q16.3 uncharacterized LOC100129852 protein-coding - - - - 20120511 -9606 100129853 LOC100129853 - - - 10 10q21.3 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 100129854 LOC100129854 - - - 6 6q16.3 arginase, type II pseudogene pseudo - - - - 20121230 -9606 100129856 RPL37AP5 - RPL37A_2_859 HGNC:36977 7 7q34 ribosomal protein L37a pseudogene 5 pseudo RPL37AP5 ribosomal protein L37a pseudogene 5 O - 20121230 -9606 100129858 LOC100129858 - - - 4 4q31.1 uncharacterized LOC100129858 miscRNA - - - - 20121230 -9606 100129860 LOC100129860 RP11-363G10.2 - - X Xp11.22 uncharacterized LOC100129860 unknown - - - - 20121230 -9606 100129861 RSL24D1P7 - - HGNC:37877 8 8p23.2 ribosomal L24 domain containing 1 pseudogene 7 pseudo RSL24D1P7 ribosomal L24 domain containing 1 pseudogene 7 O - 20121230 -9606 100129863 SUCLA2P2 - - HGNC:38102 2 2p12 succinate-CoA ligase, ADP-forming, beta subunit pseudogene 2 pseudo SUCLA2P2 succinate-CoA ligase, ADP-forming, beta subunit pseudogene 2 O - 20121230 -9606 100129866 EI24P2 - - HGNC:44587 1 1q23.1 etoposide induced 2.4 pseudogene 2 pseudo EI24P2 etoposide induced 2.4 pseudogene 2 O - 20121230 -9606 100129867 RPL30P14 - RPL30_8_1609 HGNC:36257 18 18q21.33 ribosomal protein L30 pseudogene 14 pseudo RPL30P14 ribosomal protein L30 pseudogene 14 O - 20121230 -9606 100129869 LOC100129869 - - - 20 20q13.32 uncharacterized LOC100129869 unknown - - - - 20120710 -9606 100129871 GRPEL2P3 - - HGNC:41971 7 7q21.3 GrpE-like 2, mitochondrial (E. coli) pseudogene 3 pseudo GRPEL2P3 GrpE-like 2, mitochondrial (E. coli) pseudogene 3 O - 20121230 -9606 100129872 LOC100129872 - - - 20 20q13.12 uncharacterized LOC100129872 unknown - - - - 20120511 -9606 100129878 LOC100129878 - - - 18 18q21.1 uncharacterized LOC100129878 unknown - - - - 20121017 -9606 100129880 LOC100129880 - - - 12 12q23.2 neudesin neurotrophic factor pseudogene pseudo - - - - 20121230 -9606 100129882 RPL31P49 - RPL31_26_1276 HGNC:35909 12 12q24.11 ribosomal protein L31 pseudogene 49 pseudo RPL31P49 ribosomal protein L31 pseudogene 49 O - 20121230 -9606 100129884 LOC100129884 - - - 13 13q22.1 uncharacterized LOC100129884 protein-coding - - - uncharacterized protein LOC100129884 20120511 -9606 100129885 SCXA - SCX|bHLHa41 HGNC:24312|MIM:609067|Ensembl:ENSG00000188686|Vega:OTTHUMG00000165112 8 8q24.3 scleraxis homolog A (mouse) protein-coding SCXA scleraxis homolog A (mouse) O basic helix-loop-helix transcription factor scleraxis|class A basic helix-loop-helix protein 41|class A basic helix-loop-helix protein 48|class II bHLH protein scleraxis 20121230 -9606 100129888 LOC100129888 - - - 2 2q33.1 uncharacterized LOC100129888 unknown - - - - 20120622 -9606 100129894 LOC100129894 - - - 10 10p15.3 uncharacterized LOC100129894 unknown - - - - 20120511 -9606 100129900 LOC100129900 - - - 3 3p24.1 P008-1 unknown - - - - 20120710 -9606 100129902 RPS29P11 - RPS29_8_466 HGNC:36413 4 4p15.2 ribosomal protein S29 pseudogene 11 pseudo RPS29P11 ribosomal protein S29 pseudogene 11 O - 20121230 -9606 100129905 RPS27P19 - RPS27_7_1180 HGNC:36094 11 11q23.3 ribosomal protein S27 pseudogene 19 pseudo RPS27P19 ribosomal protein S27 pseudogene 19 O - 20121230 -9606 100129917 LOC100129917 - - - 4 4p16.3 uncharacterized LOC100129917 miscRNA - - - - 20121230 -9606 100129919 HMGB1P45 - - HGNC:39277 1 1p32.3 high mobility group box 1 pseudogene 45 pseudo HMGB1P45 high mobility group box 1 pseudogene 45 O - 20121230 -9606 100129920 LOC100129920 - - - 11 11q13.4 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100129921 RPL15P4 - Em:AC006046.2|RPL15_4_680 HGNC:21663 6 6p21.33 ribosomal protein L15 pseudogene 4 pseudo RPL15P4 ribosomal protein L15 pseudogene 4 O - 20121230 -9606 100129923 LOC100129923 - - - 14 14q11.2 myoneurin pseudogene pseudo - - - - 20121230 -9606 100129924 LOC100129924 - - Ensembl:ENSG00000164008|Vega:OTTHUMG00000007568 1 1p34.2 uncharacterized LOC100129924 protein-coding - - - uncharacterized protein LOC100129924 20121230 -9606 100129926 RPL12P13 - - - 1 1p36.11 ribosomal protein L12 pseudogene pseudo - - - - 20121230 -9606 100129927 LOC100129927 - - - 4 4p16.1 putative uncharacterized protein UNQ6125/PRO20090-like pseudo - - - - 20121209 -9606 100129928 RPL31P5 - RPL31_29_1379 HGNC:23547 14 14q23.2 ribosomal protein L31 pseudogene 5 pseudo RPL31P5 ribosomal protein L31 pseudogene 5 O - 20121230 -9606 100129929 NUP210P2 - - HGNC:42707 3 3p25.2 nucleoporin 210kDa pseudogene 2 pseudo NUP210P2 nucleoporin 210kDa pseudogene 2 O - 20121230 -9606 100129930 RPL10P10 - RPL10_3_705 HGNC:35486 6 6p12.1 ribosomal protein L10 pseudogene 10 pseudo RPL10P10 ribosomal protein L10 pseudogene 10 O - 20121230 -9606 100129931 LOC100129931 - - - 4 4p16.1 uncharacterized LOC100129931 miscRNA - - - - 20121230 -9606 100129933 GLYATL1P2 - - HGNC:37863 11 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 2 pseudo GLYATL1P2 glycine-N-acyltransferase-like 1 pseudogene 2 O - 20121230 -9606 100129934 RPL34P14 - RPL34_9_693 HGNC:35927 6 6p21.1 ribosomal protein L34 pseudogene 14 pseudo RPL34P14 ribosomal protein L34 pseudogene 14 O - 20121230 -9606 100129935 LOC100129935 - - - 19 19q13.2 lectin, galactoside-binding, soluble, 14 pseudogene pseudo - - - - 20121230 -9606 100129936 LOC100129936 - - - 22 22q12.1 uncharacterized LOC100129936 unknown - - - - 20120511 -9606 100129937 LOC100129937 - - - 12 12p12.1 chromosome 16 open reading frame 88 pseudogene pseudo - - - - 20121230 -9606 100129938 LOC100129938 - - - 19 19q13.33 uncharacterized LOC100129938 unknown - - - - 20120511 -9606 100129939 RPS10P31 - RPS10_16_1758 HGNC:35998 22 22q13.31 ribosomal protein S10 pseudogene 31 pseudo RPS10P31 ribosomal protein S10 pseudogene 31 O - 20121230 -9606 100129940 LOC100129940 - - - 12 12q14.3 uncharacterized LOC100129940 unknown - - - - 20121230 -9606 100129941 RSL24D1P5 - - HGNC:37870 12 12q14.2 ribosomal L24 domain containing 1 pseudogene 5 pseudo RSL24D1P5 ribosomal L24 domain containing 1 pseudogene 5 O - 20121230 -9606 100129942 LOC100129942 - - - 15 15q26.1 capping protein (actin filament) muscle Z-line, alpha 2 pseudogene pseudo - - - - 20121230 -9606 100129947 LOC100129947 - - - X Xq25 zinc finger protein 674 pseudogene pseudo - - - - 20121230 -9606 100129948 LOC100129948 - - - 1 1q32.3 riboflavin kinase pseudogene pseudo - - - - 20121230 -9606 100129949 LOC100129949 - - - 1 1q43 protein RCC2-like pseudo - - - - 20121230 -9606 100129952 RPL39P10 - RPL39_4_182 HGNC:35745 1 1q43 ribosomal protein L39 pseudogene 10 pseudo RPL39P10 ribosomal protein L39 pseudogene 10 O - 20121230 -9606 100129955 LOC100129955 - - - 2 2q22.2 RNA polymerase I-specific transcription initiation factor RRN3-like pseudo - - - - 20121230 -9606 100129956 LOC100129956 - - - X Xq28 high mobility group nucleosomal binding domain 2 pseudogene pseudo - - - - 20121230 -9606 100129957 LOC100129957 - - - 4 4q34.1 PC4 and SFRS1 interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 100129958 KRT8P44 - - HGNC:39878 6 6q26 keratin 8 pseudogene 44 pseudo KRT8P44 keratin 8 pseudogene 44 O - 20121230 -9606 100129959 AK3P4 - - HGNC:39063 5 5q22.3 adenylate kinase 3 pseudogene 4 pseudo AK3P4 adenylate kinase 3 pseudogene 4 O - 20121230 -9606 100129960 SDCBPP2 - - HGNC:44686 8 8q13.3 syndecan binding protein (syntenin) pseudogene 2 pseudo SDCBPP2 syndecan binding protein (syntenin) pseudogene 2 O - 20121230 -9606 100129961 LOC100129961 - - - 2 2q21.3 uncharacterized LOC100129961 miscRNA - - - - 20121230 -9606 100129966 LOC100129966 - - - 11 11p15.1 mitochondrial carrier 1 pseudogene pseudo - - - - 20121230 -9606 100129969 FAM205CP - - HGNC:42673 9 9p13.3 transmembrane protein C9orf144B pseudogene pseudo FAM205CP family with sequence similarity 205, member C, pseudogene O - 20121230 -9606 100129972 LOC100129972 - - - 15 15q22.2 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100129973 LOC100129973 - - - 15 15q21.2 uncharacterized LOC100129973 miscRNA - - - - 20121230 -9606 100129974 LOC100129974 - - - 17 17p13.3 uncharacterized LOC100129974 protein-coding - - - - 20120511 -9606 100129975 RPL10P15 - - - 19 19p13.2 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 100129976 LOC100129976 - - - 19 19p12 BRI3 binding protein pseudogene pseudo - - - - 20121230 -9606 100129982 RPL12P19 - RPL12_2_212 HGNC:36248 2 2p21 ribosomal protein L12 pseudogene 19 pseudo RPL12P19 ribosomal protein L12 pseudogene 19 O - 20121230 -9606 100129983 UBE2CP3 - - HGNC:43552 4 4q12 ubiquitin-conjugating enzyme E2C pseudogene 3 pseudo UBE2CP3 ubiquitin-conjugating enzyme E2C pseudogene 3 O - 20121230 -9606 100129989 LOC100129989 - - - 3 3q13.13 chromosome 12 open reading frame 29 pseudogene pseudo - - - - 20121230 -9606 100129991 RPL38P2 - RPL38_1_244 HGNC:36620 2 2p12 ribosomal protein L38 pseudogene 2 pseudo RPL38P2 ribosomal protein L38 pseudogene 2 O - 20121230 -9606 100129994 GRPEL2P2 - - HGNC:41970 X Xq11.2 GrpE-like 2, mitochondrial (E. coli) pseudogene 2 pseudo GRPEL2P2 GrpE-like 2, mitochondrial (E. coli) pseudogene 2 O - 20121230 -9606 100129995 LOC100129995 - - - 2 2p23.2 uncharacterized LOC100129995 unknown - - - - 20120511 -9606 100129996 LOC100129996 - - - 6 6q25.2 chromosome 6 open reading frame 203 pseudogene pseudo - - - - 20121230 -9606 100129997 LOC100129997 - - - X Xp11.21 spindlin family, member 2B pseudogene pseudo - - - - 20121230 -9606 100129998 RPL5P27 - RPL5_14_1100 HGNC:36172 10 10q25.3 ribosomal protein L5 pseudogene 27 pseudo RPL5P27 ribosomal protein L5 pseudogene 27 O - 20121230 -9606 100129999 LOC100129999 - - - 9 9q34.3 uncharacterized LOC100129999 unknown - - - - 20121230 -9606 100130000 LOC100130000 - - - 1 1q21.1 phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 100130001 LOC100130001 - - - 5 5q11.2 small nuclear ribonucleoprotein polypeptide B pseudogene pseudo - - - - 20121230 -9606 100130002 HNRNPA1P23 - - HGNC:39541 3 3q21.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 23 pseudo HNRNPA1P23 heterogeneous nuclear ribonucleoprotein A1 pseudogene 23 O - 20121230 -9606 100130003 SNRPGP2 - HsT2742 HGNC:30999 18 18q21.2 small nuclear ribonucleoprotein polypeptide G pseudogene 2 pseudo SNRPGP2 small nuclear ribonucleoprotein polypeptide G pseudogene 2 O - 20121230 -9606 100130004 LOC100130004 - - - X Xp11.22 G antigen family D member 3-like pseudo - - - - 20121209 -9606 100130006 EIF4A1P11 - - HGNC:37932 1 1q25.2 eukaryotic translation initiation factor 4A1 pseudogene 11 pseudo EIF4A1P11 eukaryotic translation initiation factor 4A1 pseudogene 11 O - 20121230 -9606 100130009 HMGA1P8 - - HGNC:39183 2 2p13.1 high mobility group AT-hook 1 pseudogene 8 pseudo HMGA1P8 high mobility group AT-hook 1 pseudogene 8 O - 20121230 -9606 100130011 LOC100130011 - - - 3 3q25.2 synaptophysin-like 1 pseudogene pseudo - - - - 20121230 -9606 100130014 SETP5 - - HGNC:42924 9 9q34.3 SET pseudogene 5 pseudo SETP5 SET pseudogene 5 O - 20121230 -9606 100130015 LOC100130015 - - - 16 16q24.3 5-hydroxyisourate hydrolase pseudogene pseudo - - - - 20121230 -9606 100130017 FTLP10 - - HGNC:37959 4 4q13.2 ferritin, light polypeptide pseudogene 10 pseudo FTLP10 ferritin, light polypeptide pseudogene 10 O - 20121230 -9606 100130018 LOC100130018 - - - 1 1q21.1 prostaglandin reductase 1 pseudogene pseudo - - - - 20121230 -9606 100130026 LOC100130026 - - - 2 2q33.1 ribosomal protein L38 pseudogene pseudo - - - - 20121230 -9606 100130027 LOC100130027 - - - 8 8q24.3 uncharacterized LOC100130027 unknown - - - - 20121018 -9606 100130029 HMGA1P6 - HMGA1L6 HGNC:19121 13 13q12.12 high mobility group AT-hook 1 pseudogene 6 pseudo HMGA1P6 high mobility group AT-hook 1 pseudogene 6 O - 20121230 -9606 100130034 RPL36AP12 - RPL36A_2_79 HGNC:35897 1 1p21.2 ribosomal protein L36a pseudogene 12 pseudo RPL36AP12 ribosomal protein L36a pseudogene 12 O - 20121230 -9606 100130035 LOC100130035 - - - X Xp22.13 pallidin-like pseudo - - - - 20121209 -9606 100130038 LOC100130038 - - - 11 11q14.3 oxysterol binding protein-like 9 pseudogene pseudo - - - - 20121230 -9606 100130039 LOC100130039 - - - 9 9q13 uncharacterized LOC100130039 pseudo - - - - 20121209 -9606 100130042 LOC100130042 - - - 5 5p13.1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene pseudo - - - - 20121230 -9606 100130043 SETP17 - - HGNC:42936 11 11q14.2 SET pseudogene 17 pseudo SETP17 SET pseudogene 17 O - 20121230 -9606 100130044 LOC100130044 - - - 16 16q13 chromosome 7 open reading frame 63 pseudogene pseudo - - - - 20121230 -9606 100130048 LOC100130048 - - - 14 14q24.3 H1 histone family, member O, oocyte-specific pseudogene pseudo - - - - 20121230 -9606 100130049 LOC100130049 - - - 9 9q21.33 ribosomal L1 domain-containing protein 1-like pseudo - - - - 20121230 -9606 100130051 LOC100130051 - - - 16 16p13.3 uncharacterized LOC100130051 protein-coding - - - - 20120511 -9606 100130052 LOC100130052 - - - X Xp21.3 melanoma antigen family B, 3 pseudogene pseudo - - - - 20121230 -9606 100130057 LOC100130057 - - - 16 16q12.1 uncharacterized LOC100130057 protein-coding - - - - 20120511 -9606 100130059 VN1R70P - - HGNC:37391 16 16p11.1 vomeronasal 1 receptor 70 pseudogene pseudo VN1R70P vomeronasal 1 receptor 70 pseudogene O - 20121230 -9606 100130060 GNPATP - - HGNC:34031 16 16q21 glyceronephosphate O-acyltransferase pseudogene pseudo GNPATP glyceronephosphate O-acyltransferase pseudogene O - 20121230 -9606 100130063 LOC100130063 - - - 5 5p15.31 chromosome 16 open reading frame 61 pseudogene pseudo - - - - 20121230 -9606 100130064 EIF4BP4 - - HGNC:37937 3 3p22.1 eukaryotic translation initiation factor 4B pseudogene 4 pseudo EIF4BP4 eukaryotic translation initiation factor 4B pseudogene 4 O - 20121230 -9606 100130066 RPL9P22 - RPL9_6_1163 HGNC:36994 11 11q14.1 ribosomal protein L9 pseudogene 22 pseudo RPL9P22 ribosomal protein L9 pseudogene 22 O - 20121230 -9606 100130067 LOC100130067 - - - 4 4p15.32 hypoxanthine phosphoribosyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100130070 RPS27P13 - RPS27_6_465 HGNC:36203 4 4p15.2 ribosomal protein S27 pseudogene 13 pseudo RPS27P13 ribosomal protein S27 pseudogene 13 O - 20121230 -9606 100130071 LOC100130071 UNQ6193 - - 1 1p36.31 GSQS6193 unknown - - - - 20121230 -9606 100130072 LOC100130072 - - - 4 4p16.1 heat-responsive protein 12 pseudogene pseudo - - - - 20121230 -9606 100130073 LOC100130073 - - - 12 12p13.2 IQ motif and Sec7 domain 3 pseudogene pseudo - - - - 20121230 -9606 100130074 LOC100130074 - - - 12 12p13.31 keratin 17 pseudogene pseudo - - - - 20121230 -9606 100130075 LOC100130075 - - - 12 12q15 SUZ RNA binding domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100130078 LOC100130078 - - - 17 17q25.3 uncharacterized LOC100130078 protein-coding - - - - 20120511 -9606 100130079 LOC100130079 - - - 22 22q12.2 ret finger protein-like 4A pseudogene pseudo - - - - 20121230 -9606 100130083 HBCBP - - - 12 12q13.3 HBcAg-binding protein unknown - - - - 20121230 -9606 100130086 HSFX2 - - HGNC:32701|Ensembl:ENSG00000171129|Vega:OTTHUMG00000164446 X Xq28 heat shock transcription factor family, X linked 2 protein-coding HSFX2 heat shock transcription factor family, X linked 2 O heat shock transcription factor, X-linked 20121230 -9606 100130088 LOC100130088 - - - 5 5q33.2 oligonucleotide/oligosaccharide-binding fold containing 1 pseudogene pseudo - - - - 20121230 -9606 100130090 LOC100130090 - - - X Xq24 SWI5-dependent recombination repair 1 pseudogene pseudo - - - - 20121230 -9606 100130093 LOC100130093 - - - 1 1q42.13 uncharacterized LOC100130093 miscRNA - - - - 20121230 -9606 100130097 LOC100130097 RP11-439E19.8 - - 1 1q44 kinesin-like protein family member 6-like protein-coding - - - - 20121230 -9606 100130099 MIPEPP2 - - HGNC:39457 1 1q43 mitochondrial intermediate peptidase pseudogene 2 pseudo MIPEPP2 mitochondrial intermediate peptidase pseudogene 2 O - 20121230 -9606 100130100 LOC100130100 - - - 2 2q13 Ig kappa chain V-I region Walker-like other - - - - 20121209 -9606 100130101 LOC100130101 - - - 8 8q22.1 uncharacterized LOC100130101 protein-coding - - - - 20120511 -9606 100130102 LOC100130102 - - - 2 2q14.3 WW domain binding protein 11 pseudogene pseudo - - - - 20121230 -9606 100130105 TRIM51CP - - HGNC:43968 11 11p11.12 tripartite motif-containing 51C, pseudogene pseudo TRIM51CP tripartite motif-containing 51C, pseudogene O - 20121230 -9606 100130106 RPS23P7 - - HGNC:43899 17 17q23.2 ribosomal protein S23 pseudogene 7 pseudo RPS23P7 ribosomal protein S23 pseudogene 7 O - 20121230 -9606 100130108 ZNF849P - - HGNC:34389 19 19p12 zinc finger protein 849, pseudogene pseudo ZNF849P zinc finger protein 849, pseudogene O - 20121230 -9606 100130109 SNRPEP4 - - HGNC:43446 19 19p13.3 small nuclear ribonucleoprotein polypeptide E pseudogene 4 pseudo SNRPEP4 small nuclear ribonucleoprotein polypeptide E pseudogene 4 O - 20121230 -9606 100130110 ZSWIM5P1 - - HGNC:43768 17 17p12 zinc finger, SWIM-type containing 5 pseudogene 1 pseudo ZSWIM5P1 zinc finger, SWIM-type containing 5 pseudogene 1 O - 20121230 -9606 100130111 LOC100130111 - - - 15 15q13.1 uncharacterized LOC100130111 unknown - - - - 20121230 -9606 100130114 LOC100130114 - - - 17 17q12 Spi-C transcription factor (Spi-1/PU.1 related) pseudogene pseudo - - - - 20121230 -9606 100130117 DDX6P2 - - HGNC:37806 13 13q31.1 DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene 2 pseudo DDX6P2 DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene 2 O - 20121230 -9606 100130119 LAMTOR3P1 - - HGNC:39726 13 13q13.3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 1 pseudo LAMTOR3P1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 1 O - 20121230 -9606 100130121 LOC100130121 - - - 7 7p11.2 solute carrier family 19, member 3 pseudogene pseudo - - - - 20121230 -9606 100130134 LOC100130134 - - - X Xq21.31 staufen, RNA binding protein, homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100130137 LOC100130137 - - - 1 1q31.2 integrin beta 1 binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100130139 UBE2D3P2 - - HGNC:39010 3 3p22.2 ubiquitin-conjugating enzyme E2D 3 pseudogene 2 pseudo UBE2D3P2 ubiquitin-conjugating enzyme E2D 3 pseudogene 2 O - 20121230 -9606 100130148 MAPT-IT1 - - HGNC:43741 17 17q21.31 MAPT intronic transcript 1 (non-protein coding) miscRNA MAPT-IT1 MAPT intronic transcript 1 (non-protein coding) O - 20121230 -9606 100130152 LOC100130152 - - - 20 20q13.33 uncharacterized LOC100130152 protein-coding - - - - 20120511 -9606 100130155 LOC100130155 - - - 8 8q12.3 uncharacterized LOC100130155 miscRNA - - - - 20121230 -9606 100130156 LOC100130156 - - - 20 20q13.31 uncharacterized LOC100130156 unknown - - - - 20121230 -9606 100130157 LOC100130157 - - - 20 20q13.12 uncharacterized LOC100130157 unknown - - - - 20121230 -9606 100130158 LOC100130158 - - - 8 8q24.13 chromosome 16 open reading frame 88 pseudogene pseudo - - - - 20121230 -9606 100130161 LOC100130161 - - - 4 4p16.1 developmental pluripotency associated 4 pseudogene pseudo - - - - 20121230 -9606 100130167 NUS1P4 - - HGNC:38474 13 13q32.2 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 4 pseudo NUS1P4 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 4 O - 20121230 -9606 100130169 LOC100130169 - - - 7 7q34 uncharacterized LOC100130169 unknown - - - - 20121230 -9606 100130170 LOC100130170 - - - X Xq26.1 chromosome 12 open reading frame 49 pseudogene pseudo - - - - 20121230 -9606 100130171 LOC100130171 - - - 2 2q31.1 hematological and neurological expressed 1 pseudogene pseudo - - - - 20121230 -9606 100130172 LOC100130172 - - - 5 5q31.2 uncharacterized LOC100130172 unknown - - - - 20121230 -9606 100130175 LOC100130175 - - - 10 10q25.2 uncharacterized LOC100130175 protein-coding - - - - 20120511 -9606 100130176 LOC100130176 - - - X Xq22.2 transmembrane protein 188 pseudogene pseudo - - - - 20121230 -9606 100130177 LOC100130177 - - - 5 5q33.3 uracil-DNA glycosylase pseudogene pseudo - - - - 20121230 -9606 100130178 LSM3P4 - - HGNC:44349 4 4q31.21 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 4 pseudo LSM3P4 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 4 O - 20121230 -9606 100130180 LOC100130180 - - - 16 16q11.2 nuclear factor (erythroid-derived 2)-like 3 pseudogene pseudo - - - - 20121230 -9606 100130183 RPS24P19 - RPS24_9_1812 HGNC:35683 X Xq26.2 ribosomal protein S24 pseudogene 19 pseudo RPS24P19 ribosomal protein S24 pseudogene 19 O - 20121230 -9606 100130187 LOC100130187 tcag7.1058 - - 7 7q33 tubulin, beta 3 class III pseudogene pseudo - - - - 20121230 -9606 100130190 SRRM1P3 - - HGNC:38164 X Xq26.3 serine/arginine repetitive matrix 1 pseudogene 3 pseudo SRRM1P3 serine/arginine repetitive matrix 1 pseudogene 3 O - 20121230 -9606 100130192 RPS12P31 - RPS12_17_1644 HGNC:35578 19 19q13.11 ribosomal protein S12 pseudogene 31 pseudo RPS12P31 ribosomal protein S12 pseudogene 31 O - 20121230 -9606 100130193 LOC100130193 - - - 1 1p36.13 uncharacterized LOC100130193 unknown - - - - 20120511 -9606 100130196 LOC100130196 - - - 1 1p31.3 heterogeneous nuclear ribonucleoprotein C-like 1-like pseudo - - - - 20121209 -9606 100130197 EFCAB14-AS1 - KIAA0494-AS1 HGNC:44108|Ensembl:ENSG00000228237|Vega:OTTHUMG00000007993 1 1p33 EFCAB14 antisense RNA 1 miscRNA EFCAB14-AS1 EFCAB14 antisense RNA 1 O - 20121230 -9606 100130203 LOC100130203 - - - 11 11q14.3 Cdon homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100130204 NIPA2P2 - - HGNC:42042 3 3p12.3 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 2 pseudo NIPA2P2 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 2 O - 20121230 -9606 100130207 LOC100130207 - - - 3 3p26.2 uncharacterized LOC100130207 unknown - - - - 20120909 -9606 100130209 LOC100130209 - - - 2 2p12 charged multivesicular body protein 4A pseudogene pseudo - - - - 20121230 -9606 100130210 LOC100130210 - - - 7 7p11.2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene pseudo - - - - 20121230 -9606 100130211 EEF1A1P29 - - HGNC:37904 X Xq21.2 eukaryotic translation elongation factor 1 alpha 1 pseudogene 29 pseudo EEF1A1P29 eukaryotic translation elongation factor 1 alpha 1 pseudogene 29 O - 20121230 -9606 100130219 LOC100130219 - - - 12 12p13.33 uncharacterized LOC100130219 unknown - - - - 20121230 -9606 100130225 RPL13P11 - RPL13_3_914 HGNC:35805 8 8q13.3 ribosomal protein L13 pseudogene 11 pseudo RPL13P11 ribosomal protein L13 pseudogene 11 O - 20121230 -9606 100130231 LOC100130231 - - - 8 8q24.13 uncharacterized LOC100130231 miscRNA - - - - 20121230 -9606 100130232 LOC100130232 - - - 8 8q22.3 LP2209 unknown - - - - 20121230 -9606 100130233 NPM1P8 - - HGNC:7928 X Xp21.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 8 pseudo NPM1P8 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 8 O - 20121230 -9606 100130234 EEF1A1P27 - - HGNC:37900 7 7p21.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 27 pseudo EEF1A1P27 eukaryotic translation elongation factor 1 alpha 1 pseudogene 27 O - 20121230 -9606 100130235 LOC100130235 - - - 1 1p21.3 katanin p80 subunit B-like 1 pseudogene pseudo - - - - 20121230 -9606 100130236 LOC100130236 - - - 1 1q21.1 uncharacterized LOC100130236 unknown - - - - 20120511 -9606 100130238 LOC100130238 - - - 12 12q24.33 uncharacterized LOC100130238 miscRNA - - - - 20121230 -9606 100130239 UBA52P6 - RPL40_3_969 HGNC:36763 9 9p21.3 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 6 pseudo UBA52P6 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 6 O - 20121230 -9606 100130240 RPS5P2 - RPS5_4_1727 HGNC:17222 21 21q22.11 ribosomal protein S5 pseudogene 2 pseudo RPS5P2 ribosomal protein S5 pseudogene 2 O - 20121230 -9606 100130241 LOC100130241 - - - 17 17p13.2 putative uncharacterized protein FLJ46089-like pseudo - - - - 20121209 -9606 100130247 COX6CP3 - - HGNC:31721 18 18p11.32 cytochrome c oxidase subunit VIc pseudogene 3 pseudo COX6CP3 cytochrome c oxidase subunit VIc pseudogene 3 O - 20121230 -9606 100130249 PP2672 - - - 1 1q42.3 uncharacterized LOC100130249 unknown - - - - 20121230 -9606 100130251 LOC100130251 - - - 1 1q41 nucleoredoxin pseudogene pseudo - - - - 20121230 -9606 100130253 LOC100130253 - - - 10 10q23.31 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 pseudogene pseudo - - - - 20121230 -9606 100130256 LOC100130256 - - - 2 - uncharacterized LOC100130256 unknown - - - - 20120622 -9606 100130259 SALL4P2 - - HGNC:39819 X Xq26.1 sal-like 4 (Drosophila) pseudogene 2 pseudo SALL4P2 sal-like 4 (Drosophila) pseudogene 2 O - 20121230 -9606 100130260 EEF1GP2 - - HGNC:44557 5 5q32 eukaryotic translation elongation factor 1 gamma pseudogene 2 pseudo EEF1GP2 eukaryotic translation elongation factor 1 gamma pseudogene 2 O - 20121230 -9606 100130264 LOC100130264 - - - 20 20p11.23 uncharacterized LOC100130264 miscRNA - - - - 20121230 -9606 100130265 ARL2BPP4 - - HGNC:39448 5 5q23.3 ADP-ribosylation factor-like 2 binding protein pseudogene 4 pseudo ARL2BPP4 ADP-ribosylation factor-like 2 binding protein pseudogene 4 O - 20121230 -9606 100130268 LOC100130268 - - - 12 12q21.1 uncharacterized LOC100130268 unknown - - - - 20120511 -9606 100130269 LOC100130269 - - - 22 22q12.3 uncharacterized LOC100130269 unknown - - - - 20120511 -9606 100130270 LOC100130270 RP11-182I10.1 - - 1 1p31.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa pseudogene pseudo - - - - 20121230 -9606 100130274 CCDC166 - - HGNC:41910|Ensembl:ENSG00000255181|Vega:OTTHUMG00000165148 8 8q24.3 coiled-coil domain containing 166 protein-coding CCDC166 coiled-coil domain containing 166 O coiled-coil domain-containing protein 166 20121230 -9606 100130275 LOC100130275 - - - 6 6p24.3 uncharacterized LOC100130275 miscRNA - - - - 20121230 -9606 100130276 LOC100130276 - - - 16 16p13.13 uncharacterized LOC100130276 protein-coding - - - - 20120511 -9606 100130277 CDC27P2 - - HGNC:38092 Y Yp11.2 cell division cycle 27 homolog (S. cerevisiae) pseudogene 2 pseudo CDC27P2 cell division cycle 27 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100130278 LOC100130278 - - - 3 3p21.31 uncharacterized LOC100130278 protein-coding - - - - 20120511 -9606 100130279 HMGB1P44 - - HGNC:39275 4 4q21.1 high mobility group box 1 pseudogene 44 pseudo HMGB1P44 high mobility group box 1 pseudogene 44 O - 20121230 -9606 100130283 LOC100130283 - - - 16 16p13.2 uncharacterized LOC100130283 unknown - - - - 20120508 -9606 100130285 LOC100130285 - - - 16 16p13.3 uncharacterized LOC100130285 unknown - - - - 20121230 -9606 100130286 RPL34P11 - RPL34_6_354 HGNC:36412 3 3p24.1 ribosomal protein L34 pseudogene 11 pseudo RPL34P11 ribosomal protein L34 pseudogene 11 O - 20121230 -9606 100130289 SNRPGP10 - - HGNC:39329 1 1q32.1 small nuclear ribonucleoprotein polypeptide G pseudogene 10 pseudo SNRPGP10 small nuclear ribonucleoprotein polypeptide G pseudogene 10 O - 20121230 -9606 100130298 LOC100130298 - - - 8 8q12.2 hCG1816373-like miscRNA - - - - 20121230 -9606 100130299 LOC100130299 - - - 8 8q11.21 isopentenyl-diphosphate delta isomerase 1 pseudogene pseudo - - - - 20121230 -9606 100130300 RPS27AP13 - RPS27A_4_904 HGNC:36667 8 8q11.23 ribosomal protein S27a pseudogene 13 pseudo RPS27AP13 ribosomal protein S27a pseudogene 13 O - 20121230 -9606 100130301 LOC100130301 - - - 8 8q21.11 uncharacterized LOC100130301 protein-coding - - - uncharacterized protein LOC100130301 20121230 -9606 100130302 SUPT20HL1 - FAM48B1 HGNC:30773 X Xp22.11 suppressor of Ty 20 homolog (S. cerevisiae)-like 1 protein-coding SUPT20HL1 suppressor of Ty 20 homolog (S. cerevisiae)-like 1 O family with sequence similarity 48, member B1|protein FAM48B1 20121230 -9606 100130307 LOC100130307 - - - 7 7p22.1 speedy homolog E2 (Xenopus laevis) pseudogene pseudo - - - - 20121230 -9606 100130310 MSANTD2P1 - - HGNC:39637 21 21q21.2 Myb/SANT-like DNA-binding domain containing 2 pseudogene 1 pseudo MSANTD2P1 Myb/SANT-like DNA-binding domain containing 2 pseudogene 1 O - 20121230 -9606 100130311 C17orf107 - - HGNC:37238|Ensembl:ENSG00000205710|Vega:OTTHUMG00000164838 17 17p13.2 chromosome 17 open reading frame 107 protein-coding C17orf107 chromosome 17 open reading frame 107 O uncharacterized protein C17orf107 20121230 -9606 100130313 RPS6P23 - - HGNC:39581 13 13q32.3 ribosomal protein S6 pseudogene 23 pseudo RPS6P23 ribosomal protein S6 pseudogene 23 O - 20121230 -9606 100130314 LOC100130314 - - - 16 16q12.1 uncharacterized LOC100130314 protein-coding - - - - 20120511 -9606 100130316 LOC100130316 - - - 5 5q23.2 putative RNA-binding protein 15-like pseudo - - - - 20121209 -9606 100130319 TAF9BP2 - - HGNC:38836 10 10q25.3 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 2 pseudo TAF9BP2 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 2 O - 20121230 -9606 100130321 LOC100130321 - - - 8 8p23.3 DNA fragmentation factor, 45kDa, alpha polypeptide pseudogene pseudo - - - - 20121230 -9606 100130322 GAFA2 - - - 16 16q23.2 FGF-2 activity-associated protein 2 unknown - - - - 20120710 -9606 100130326 LOC100130326 - - - 3 3p12.1 transmembrane protein 183A pseudogene pseudo - - - - 20121230 -9606 100130327 LOC100130327 - - - 3 3p11.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa pseudogene pseudo - - - - 20121230 -9606 100130329 LOC100130329 - - - 18 18p11.21 solute carrier family 41, member 2 pseudogene pseudo - - - - 20121230 -9606 100130331 LOC100130331 - - - 1 1q43 POTE ankyrin domain family, member F pseudogene pseudo - - - - 20121230 -9606 100130333 LOC100130333 - - - 3 3q22.1 uncharacterized LOC100130333 pseudo - - - - 20121209 -9606 100130335 NAP1L1P3 - - HGNC:38007 3 3q13.33 nucleosome assembly protein 1-like 1 pseudogene 3 pseudo NAP1L1P3 nucleosome assembly protein 1-like 1 pseudogene 3 O - 20121230 -9606 100130338 PABPC1P9 - - HGNC:37991 22 22q11.1 poly(A) binding protein, cytoplasmic 1 pseudogene 9 pseudo PABPC1P9 poly(A) binding protein, cytoplasmic 1 pseudogene 9 O - 20121230 -9606 100130340 LOC100130340 - - - 12 - glucoside xylosyltransferase 1-like pseudo - - - - 20121102 -9606 100130342 SCGB2B3P - C2B|SCGB4A3P HGNC:31895 19 19q13.11 secretoglobin, family 2B, member 3, pseudogene pseudo SCGB2B3P secretoglobin, family 2B, member 3, pseudogene O - 20121230 -9606 100130345 LOC100130345 - - - 3 3p14.1 cadherin-related family member 3-like protein-coding - - - - 20120511 -9606 100130347 RPS6P5 - RPS6_2_487 HGNC:36242 4 4q13.1 ribosomal protein S6 pseudogene 5 pseudo RPS6P5 ribosomal protein S6 pseudogene 5 O - 20121230 -9606 100130348 LOC100130348 - - Ensembl:ENSG00000187066|Vega:OTTHUMG00000165598 11 11q13.1 uncharacterized LOC100130348 protein-coding - - - uncharacterized protein LOC100130348 20121230 -9606 100130353 LOC100130353 - - - 11 11q23.3 hippocampus abundant transcript-like 1 pseudogene pseudo - - - - 20121230 -9606 100130357 LOC100130357 - - - 6 6p24.1 uncharacterized LOC100130357 protein-coding - - - uncharacterized protein LOC100130357 20121230 -9606 100130359 LOC100130359 - - - X Xp11.3 mediator complex subunit 28 pseudogene pseudo - - - - 20121230 -9606 100130361 CXorf49 - CXorf49B HGNC:30891 X Xq13.1 chromosome X open reading frame 49 protein-coding CXorf49 chromosome X open reading frame 49 O putative uncharacterized protein CXorf49|uncharacterized protein CXorf49 20121230 -9606 100130368 SNRPGP4 - - HGNC:39323 17 17q24.3 small nuclear ribonucleoprotein polypeptide G pseudogene 4 pseudo SNRPGP4 small nuclear ribonucleoprotein polypeptide G pseudogene 4 O - 20121230 -9606 100130370 LOC100130370 - - - 17 17q25.3 uncharacterized LOC100130370 protein-coding - - - - 20121209 -9606 100130372 LOC100130372 - - - 20 20q13.13 uncharacterized LOC100130372 protein-coding - - - - 20120511 -9606 100130373 LOC100130373 - - - 20 20q11.23 uncharacterized LOC100130373 unknown - - - - 20120511 -9606 100130374 RPL13P14 - RPL13_6_1708 HGNC:36387 20 20q13.12 ribosomal protein L13 pseudogene 14 pseudo RPL13P14 ribosomal protein L13 pseudogene 14 O - 20121230 -9606 100130376 LOC100130376 - - - 8 8q24.21 mitochondrial translational release factor 1-like pseudogene pseudo - - - - 20121230 -9606 100130383 HIGD1AP12 - - HGNC:43007 1 1p13.2 HIG1 hypoxia inducible domain family, member 1A pseudogene 12 pseudo HIGD1AP12 HIG1 hypoxia inducible domain family, member 1A pseudogene 12 O - 20121230 -9606 100130384 LOC100130384 - - - 11 11p15.2 MLF1 interacting protein pseudogene pseudo - - - - 20121230 -9606 100130386 LINC00552 - - HGNC:43692 13 13q34 long intergenic non-protein coding RNA 552 miscRNA LINC00552 long intergenic non-protein coding RNA 552 O - 20121230 -9606 100130388 LOC100130388 - - - 2 2q13 eukaryotic translation elongation factor 1 epsilon 1 pseudogene pseudo - - - - 20121230 -9606 100130391 YWHAQP5 - - HGNC:37684 2 2q11.2 YWHAQ pseudogene 5 pseudo YWHAQP5 YWHAQ pseudogene 5 O - 20121230 -9606 100130392 RPL9P20 - RPL9_7_879 HGNC:36996 8 8p22 ribosomal protein L9 pseudogene 20 pseudo RPL9P20 ribosomal protein L9 pseudogene 20 O - 20121230 -9606 100130394 LOC100130394 - - - 5 5q35.1 CCDC72 pseudogene pseudo - - - - 20121230 -9606 100130396 ATP5LP4 - - HGNC:38165 4 4q31.23 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4 pseudo ATP5LP4 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4 O - 20121230 -9606 100130400 RPL21P92 - RPL21_38_1051 HGNC:35606 10 10q21.3 ribosomal protein L21 pseudogene 92 pseudo RPL21P92 ribosomal protein L21 pseudogene 92 O - 20121230 -9606 100130402 LOC100130402 - - - 6 6q22.33 beta-1,3-N-acetylgalactosaminyltransferase 2 pseudogene pseudo - - - - 20121230 -9606 100130403 LOC100130403 - - - 6 6p12.1 replication protein A3, 14kDa pseudogene pseudo - - - - 20121230 -9606 100130405 HMGB3P26 - - HGNC:39318 14 14q32.32 high mobility group box 3 pseudogene 26 pseudo HMGB3P26 high mobility group box 3 pseudogene 26 O - 20121230 -9606 100130409 BTF3P15 - - HGNC:38567 10 10q25.1 basic transcription factor 3 pseudogene 15 pseudo BTF3P15 basic transcription factor 3 pseudogene 15 O - 20121230 -9606 100130417 LOC100130417 - - - 1 1p36.33 uncharacterized LOC100130417 miscRNA - - - - 20121230 -9606 100130418 CECR7 - SAHL1 HGNC:1845 22 22q11.1 cat eye syndrome chromosome region, candidate 7 (non-protein coding) miscRNA CECR7 cat eye syndrome chromosome region, candidate 7 (non-protein coding) O - 20121230 -9606 100130419 LOC100130419 - - - 19 19q13.32 uncharacterized LOC100130419 unknown - - - - 20120511 -9606 100130428 LOC100130428 UNQ565 - - 11 11q24.2 IGYY565 unknown - - - - 20121230 -9606 100130429 LOC100130429 - - - 2 2p21 uncharacterized LOC100130429 unknown - - - - 20120511 -9606 100130430 LOC100130430 - - - 16 16p13.3 uncharacterized LOC100130430 miscRNA - - - - 20120622 -9606 100130433 LOC100130433 - - - 9 9q21.33 uncharacterized LOC100130433 protein-coding - - - - 20120511 -9606 100130435 RPS7P13 - RPS7_7_1794 HGNC:35756 X Xq21.33 ribosomal protein S7 pseudogene 13 pseudo RPS7P13 ribosomal protein S7 pseudogene 13 O - 20121230 -9606 100130436 LOC100130436 - - - 16 16p13.3 uncharacterized LOC100130436 protein-coding - - - - 20120511 -9606 100130437 LOC100130437 - - - 15 15q22.31 transmembrane protein 126A pseudogene pseudo - - - - 20121230 -9606 100130442 LOC100130442 - - - 19 19p13.11 uncharacterized LOC100130442 protein-coding - - - - 20120511 -9606 100130446 RPS27AP12 - RPS27A_5_866 HGNC:35732 7 7q36.3 ribosomal protein S27a pseudogene 12 pseudo RPS27AP12 ribosomal protein S27a pseudogene 12 O - 20121230 -9606 100130447 RPL12P16 - RPL12_4_315 HGNC:36926 2 2q33.2 ribosomal protein L12 pseudogene 16 pseudo RPL12P16 ribosomal protein L12 pseudogene 16 O - 20121230 -9606 100130448 MRS2P1 - MRS2LP1 HGNC:20590 8 8q24.13 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 1 pseudo MRS2P1 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100130449 PP14571 - - - 2 2q37.3 uncharacterized LOC100130449 miscRNA - - - - 20121230 -9606 100130450 RPL3P5 - RPL3_1_338 HGNC:36934 2 2q37.3 ribosomal protein L3 pseudogene 5 pseudo RPL3P5 ribosomal protein L3 pseudogene 5 O - 20121230 -9606 100130451 LOC100130451 - - - 2 2q34 uncharacterized LOC100130451 protein-coding - - - uncharacterized protein LOC100130451 20121230 -9606 100130452 LOC100130452 - - - 2 2q33.1 uncharacterized LOC100130452 miscRNA - - - - 20121230 -9606 100130453 LOC100130453 - - - 18 18q23 uncharacterized LOC100130453 unknown - - - - 20120511 -9606 100130455 LOC100130455 - - - 1 1p22.2 chromosome 20 open reading frame 196 pseudogene pseudo - - - - 20121230 -9606 100130456 LOC100130456 - - - 7 7p22.3 uncharacterized LOC100130456 unknown - - - - 20120511 -9606 100130458 LOC100130458 - - - 9 9p13.2 uncharacterized LOC100130458 unknown - - - - 20121230 -9606 100130459 LOC100130459 - - - 4 4p16.3 uncharacterized LOC100130459 pseudo - - - - 20121209 -9606 100130460 LOC100130460 - - - 11 11p15.4 uncharacterized LOC100130460 miscRNA - - - - 20120511 -9606 100130461 CBX1P4 - - HGNC:38658 X Xp22.13 chromobox homolog 1 pseudogene 4 pseudo CBX1P4 chromobox homolog 1 pseudogene 4 O - 20121230 -9606 100130462 HNF4GP1 - - HGNC:35417 13 13q21.1 hepatocyte nuclear factor 4, gamma pseudogene 1 pseudo HNF4GP1 hepatocyte nuclear factor 4, gamma pseudogene 1 O - 20121230 -9606 100130463 LOC100130463 - - - 13 13q34 uncharacterized LOC100130463 protein-coding - - - - 20121018 -9606 100130466 LOC100130466 - - - 1 1q42.13 nuclear ubiquitous casein and cyclin-dependent kinase substrate 1-like pseudo - - - - 20121209 -9606 100130468 LOC100130468 - - - 18 18p11.22 uncharacterized LOC100130468 unknown - - - - 20120511 -9606 100130476 LOC100130476 - - - 6 6q23.3 uncharacterized LOC100130476 miscRNA - - - - 20121230 -9606 100130480 LOC100130480 - - Ensembl:ENSG00000265944|Vega:OTTHUMG00000178464 18 18p11.31 uncharacterized LOC100130480 protein-coding - - - uncharacterized protein LOC100130480 20121230 -9606 100130481 CCT6P4 - CCT6-4P HGNC:35148 3 3q28 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 4 pseudo CCT6P4 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 4 O - 20121230 -9606 100130484 UBFD1P1 - - HGNC:42389 3 3q11.2 ubiquitin family domain containing 1 pseudogene 1 pseudo UBFD1P1 ubiquitin family domain containing 1 pseudogene 1 O - 20121230 -9606 100130485 LOC100130485 - - - 1 1q42.3 FK506 binding protein 3, 25kDa pseudogene pseudo - - - - 20121230 -9606 100130487 LOC100130487 - - - 18 18p11.21 WD repeat domain 89 pseudogene pseudo - - - - 20121230 -9606 100130488 LOC100130488 - - - 2 2q11.1 glucoside xylosyltransferase 2 pseudogene pseudo - - - - 20121230 -9606 100130489 LOC100130489 - - - 12 - uncharacterized LOC100130489 pseudo - - - - 20121102 -9606 100130490 LOC100130490 - - - 19 19q13.43 tumor protein p63 regulated 1-like pseudogene pseudo - - - - 20121230 -9606 100130495 RPS12P26 - RPS12_12_1461 HGNC:36320 15 15q26.1 ribosomal protein S12 pseudogene 26 pseudo RPS12P26 ribosomal protein S12 pseudogene 26 O - 20121230 -9606 100130497 LOC100130497 - - - 1 1p31.3 dnaJ homolog subfamily B member 6-like pseudo - - - - 20121209 -9606 100130500 LOC100130500 - - - X Xq21.33 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 100130502 LOC100130502 - - - 2 2p21 uncharacterized LOC100130502 unknown - - - - 20121230 -9606 100130503 LOC100130503 - - - 3 3p22.3 uncharacterized LOC100130503 unknown - - - - 20120726 -9606 100130507 LOC100130507 - - - 11 11q25 uncharacterized LOC100130507 unknown - - - - 20121230 -9606 100130514 PGAM1P1 - - HGNC:42448 5 5q11.2 phosphoglycerate mutase 1 pseudogene 1 pseudo PGAM1P1 phosphoglycerate mutase 1 pseudogene 1 O - 20121230 -9606 100130519 TMEM221 - - HGNC:21943|Ensembl:ENSG00000188051 19 19p13.11 transmembrane protein 221 protein-coding TMEM221 transmembrane protein 221 O Putative transmembrane protein ENSP00000342162 20121230 -9606 100130520 LOC100130520 - - - 17 17q25.1 CD300c molecule-like protein-coding - - - - 20120508 -9606 100130522 PARD6G-AS1 - - HGNC:44109 18 18q23 PARD6G antisense RNA 1 miscRNA PARD6G-AS1 PARD6G antisense RNA 1 O - 20121230 -9606 100130523 RPL5P8 - RPL5_3_323 HGNC:36290 2 2q34 ribosomal protein L5 pseudogene 8 pseudo RPL5P8 ribosomal protein L5 pseudogene 8 O - 20121230 -9606 100130524 RPL6P23 - - - 8 8q22.1 ribosomal protein L6 pseudogene pseudo - - - - 20121230 -9606 100130527 LOC100130527 - - - 7 7p22.1 putative uncharacterized protein UNQ6125/PRO20090-like pseudo - - - - 20121209 -9606 100130528 SUCLG2P4 - - HGNC:43999 5 5p13.3 succinate-CoA ligase, GDP-forming, beta subunit pseudogene 4 pseudo SUCLG2P4 succinate-CoA ligase, GDP-forming, beta subunit pseudogene 4 O - 20121230 -9606 100130531 LOC100130531 - - - 1 1p22.1 ribosomal protein L39 pseudogene pseudo - - - - 20121230 -9606 100130532 LOC100130532 - - - 4 4p14 F-box protein 38 pseudogene pseudo - - - - 20121230 -9606 100130533 LOC100130533 - - - 13 - uncharacterized LOC100130533 other - - - - 20120710 -9606 100130535 VIMP1 - - HGNC:43891 6 6q22.32 vimentin pseudogene 1 pseudo VIMP1 vimentin pseudogene 1 O - 20121230 -9606 100130537 RPL31P26 - RPL31_7_527 HGNC:36063 4 4q31.22 ribosomal protein L31 pseudogene 26 pseudo RPL31P26 ribosomal protein L31 pseudogene 26 O - 20121230 -9606 100130539 LOC100130539 - - - 10 10q11.21 uncharacterized LOC100130539 protein-coding - - - uncharacterized protein LOC100130539 20121230 -9606 100130540 LOC100130540 - - - 3 3q21.3 uncharacterized LOC100130540 protein-coding - - - - 20120511 -9606 100130542 LOC100130542 - - - 14 14q24.1 uncharacterized LOC100130542 protein-coding - - - - 20120508 -9606 100130547 LOC100130547 - - - 9 9q34.3 uncharacterized LOC100130547 unknown - - - - 20121230 -9606 100130548 LOC100130548 - - - 9 9q34.2 uncharacterized LOC100130548 unknown - - - - 20121230 -9606 100130549 ISCA1P6 - - HGNC:38027 2 2q14.3 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 6 pseudo ISCA1P6 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 6 O - 20121230 -9606 100130550 LOC100130550 - - - 3 3q22.1 g2/M phase-specific E3 ubiquitin-protein ligase-like pseudo - - - - 20121230 -9606 100130555 RPL23AP68 - RPL23A_26_1264 HGNC:35489 12 12q21.32 ribosomal protein L23a pseudogene 68 pseudo RPL23AP68 ribosomal protein L23a pseudogene 68 O - 20121230 -9606 100130557 LOC100130557 - - - 1 1p34.2 uncharacterized LOC100130557 miscRNA - - - - 20121230 -9606 100130560 LOC100130560 - - - 15 15q26.1 uncharacterized LOC100130560 protein-coding - - - - 20120511 -9606 100130561 HMGB1P10 CTA-445C9.11-001 HMG1L10|HMGB1L10|bK445C9.3 HGNC:4994 22 22q12.1 high mobility group box 1 pseudogene 10 pseudo HMGB1P10 high mobility group box 1 pseudogene 10 O - 20121230 -9606 100130562 RPS2P5 - RPS2_20_1284|bcm384 HGNC:31386 12 12q24.23 ribosomal protein S2 pseudogene 5 pseudo RPS2P5 ribosomal protein S2 pseudogene 5 O - 20121230 -9606 100130564 SEPT7P7 RP11-207C11.2 - HGNC:38043 9 9q22.33 septin 7 pseudogene 7 pseudo SEPT7P7 septin 7 pseudogene 7 O - 20121230 -9606 100130566 LOC100130566 - - - 16 16p13.3 eukaryotic translation initiation factor 1 pseudogene pseudo - - - - 20121230 -9606 100130571 LOC100130571 - - - 14 14q11.2 coiled-coil domain containing 107 pseudogene pseudo - - - - 20121230 -9606 100130572 RAD23BP2 - - HGNC:44510 7 7q21.11 RAD23 homolog B (S. cerevisiae) pseudogene 2 pseudo RAD23BP2 RAD23 homolog B (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100130573 LOC100130573 - - - 1 1q32.1 uncharacterized LOC100130573 protein-coding - - - - 20120511 -9606 100130574 LOC100130574 - - - 5 5q11.2 thiosulfate sulfurtransferase (rhodanese)-like domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100130579 LOC100130579 - - - 15 15q24.1 prohibitin pseudogene pseudo - - - - 20121230 -9606 100130581 LOC100130581 - - - 17 17q21.31 uncharacterized LOC100130581 miscRNA - - - - 20121230 -9606 100130582 LOC100130582 - - - 12 12p13.31 myosin, light chain 9, regulatory pseudogene pseudo - - - - 20121230 -9606 100130584 LOC100130584 - - - 19 19p13.3 chloride intracellular channel 4 pseudogene pseudo - - - - 20121230 -9606 100130587 LOC100130587 - - - 20 20q13.33 uncharacterized LOC100130587 unknown - - - - 20120511 -9606 100130591 LOC100130591 - - - 7 7q36.1 uncharacterized LOC100130591 miscRNA - - - - 20120511 -9606 100130597 LOC100130597 - - - 21 21q22.3 uncharacterized LOC100130597 protein-coding - - - - 20120511 -9606 100130600 CICP14 - - HGNC:38542 7 7q32.1 capicua homolog (Drosophila) pseudogene 14 pseudo CICP14 capicua homolog (Drosophila) pseudogene 14 O - 20121230 -9606 100130602 LOC100130602 - - - 16 16q12.1 regulation of nuclear pre-mRNA domain containing 1A pseudogene pseudo - - - - 20121230 -9606 100130603 LOC100130603 - - - 16 16p11.2 RNA binding motif protein 22 pseudogene pseudo - - - - 20121230 -9606 100130606 LOC100130606 - - - 6 6p21.1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100130607 LOC100130607 - - - X Xq26.3 WD repeat domain 4 pseudogene pseudo - - - - 20121230 -9606 100130609 PP12708 - - - 7 7q34 uncharacterized LOC100130609 unknown - - - - 20121230 -9606 100130612 LOC100130612 - - - 8 8p21.1 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene pseudo - - - - 20121230 -9606 100130613 CXorf64 RP13-218H24.1 - HGNC:34498|Ensembl:ENSG00000183631|Vega:OTTHUMG00000022355 X Xq25 chromosome X open reading frame 64 protein-coding CXorf64 chromosome X open reading frame 64 O uncharacterized protein CXorf64 20121230 -9606 100130618 LOC100130618 - - - 7 7q31.32 tetratricopeptide repeat domain 14 pseudogene pseudo - - - - 20121230 -9606 100130620 LOC100130620 - - - X Xq26.3 tropomyosin 1 (alpha) pseudogene pseudo - - - - 20121230 -9606 100130621 RANP4 - - HGNC:39859 X Xq26.3 RAN, member RAS oncogene family pseudogene 4 pseudo RANP4 RAN, member RAS oncogene family pseudogene 4 O - 20121230 -9606 100130624 RPL15P22 - RPL15_10_1742 HGNC:36933 22 22q12.1 ribosomal protein L15 pseudogene 22 pseudo RPL15P22 ribosomal protein L15 pseudogene 22 O - 20121230 -9606 100130626 TCEB1P18 - - HGNC:38154 1 1p31.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 18 pseudo TCEB1P18 transcription elongation factor B (SIII), polypeptide 1 pseudogene 18 O - 20121230 -9606 100130627 LOC100130627 - - - 1 1p34.3 uncharacterized LOC100130627 unknown - - - - 20120511 -9606 100130630 RPL23P3 - RPL23_1_65 HGNC:35988 1 1p31.1 ribosomal protein L23 pseudogene 3 pseudo RPL23P3 ribosomal protein L23 pseudogene 3 O - 20121230 -9606 100130631 EEF1B2P4 - - HGNC:32475 12 12q23.3 eukaryotic translation elongation factor 1 beta 2 pseudogene 4 pseudo EEF1B2P4 eukaryotic translation elongation factor 1 beta 2 pseudogene 4 O - 20121230 -9606 100130632 LOC100130632 - - - 19 19q13.11 zinc finger protein 530-like pseudo - - - - 20121230 -9606 100130636 SPATA31D2P - FAM75D2P HGNC:38607 9 9q21.32 SPATA31 subfamily D, member 2, pseudogene pseudo SPATA31D2P SPATA31 subfamily D, member 2, pseudogene O - 20121230 -9606 100130637 MORF4L1P7 - - HGNC:39259 1 1q25.2 mortality factor 4 like 1 pseudogene 7 pseudo MORF4L1P7 mortality factor 4 like 1 pseudogene 7 O - 20121230 -9606 100130639 LOC100130639 - - - 5 5q13.1 leucine rich repeat containing 3C pseudogene pseudo - - - - 20121230 -9606 100130640 YWHAZP7 - - HGNC:39028 X Xq11.2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 7 pseudo YWHAZP7 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 7 O - 20121230 -9606 100130642 LOC100130642 - - - 2 2p21 uncharacterized LOC100130642 unknown - - - - 20120511 -9606 100130649 LOC100130649 - - - 2 2p11.2 G protein-coupled receptor 160 pseudogene pseudo - - - - 20121230 -9606 100130654 LOC100130654 - - - 17 17q21.2 uncharacterized LOC100130654 protein-coding - - - - 20120511 -9606 100130657 LOC100130657 - - - 17 17q24.2 uncharacterized LOC100130657 protein-coding - - - - 20120511 -9606 100130660 LOC100130660 - - - 15 15q14 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100130664 LOC100130664 - - - 16 16q24.3 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic pseudogene pseudo - - - - 20121230 -9606 100130671 IFNWP9 RP11-1P8.5 - HGNC:5455 9 9p21.3 interferon, omega 1 pseudogene 9 pseudo IFNWP9 interferon, omega 1 pseudogene 9 O - 20121230 -9606 100130673 LOC100130673 - - - 7 7p14.3 phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo - - - - 20121230 -9606 100130674 LOC100130674 - - - 4 4p15.1 cathepsin B pseudogene pseudo - - - - 20121230 -9606 100130676 RPSAP38 - RPSA_9_557 HGNC:35963 5 5p13.1 ribosomal protein SA pseudogene 38 pseudo RPSAP38 ribosomal protein SA pseudogene 38 O - 20121230 -9606 100130677 NFYAP1 RP11-520F9.1 NFYAP HGNC:34078 13 13q21.31 nuclear transcription factor Y, alpha pseudogene 1 pseudo NFYAP1 nuclear transcription factor Y, alpha pseudogene 1 O - 20121230 -9606 100130680 LOC100130680 - - - 7 7q31.2 ankyrin repeat domain 49 pseudogene pseudo - - - - 20121230 -9606 100130682 LOC100130682 - - - 2 2q23.1 ubiquitin specific peptidase 12 pseudogene pseudo - - - - 20121230 -9606 100130683 LOC100130683 - - - 6 6q21 chromatin assembly factor 1, subunit B (p60) pseudogene pseudo - - - - 20121230 -9606 100130684 LOC100130684 - - - X Xq26.1 fibrous sheath-interacting protein 2-like pseudo - - - - 20121230 -9606 100130687 FABP5P6 - FABP5L6 HGNC:31069 5 5q23.1 fatty acid binding protein 5 pseudogene 6 pseudo FABP5P6 fatty acid binding protein 5 pseudogene 6 O - 20121230 -9606 100130691 LOC100130691 hCG_1817306 - - 2 2q31.2 uncharacterized LOC100130691 miscRNA - - - - 20121230 -9606 100130693 ARHGAP42P2 - - HGNC:43939 2 2q21.1 Rho GTPase activating protein 42 pseudogene 2 pseudo ARHGAP42P2 Rho GTPase activating protein 42 pseudogene 2 O - 20121209 -9606 100130694 LOC100130694 - - - 20 20p12.2 uncharacterized LOC100130694 unknown - - - - 20120511 -9606 100130698 LOC100130698 - - - 10 10q23.1 uncharacterized LOC100130698 unknown - - - - 20121230 -9606 100130699 RSL24D1P10 - - HGNC:37875 5 5q23.1 ribosomal L24 domain containing 1 pseudogene 10 pseudo RSL24D1P10 ribosomal L24 domain containing 1 pseudogene 10 O - 20121230 -9606 100130700 LOC100130700 - - - 16 16p11.1 uncharacterized LOC100130700 miscRNA - - - - 20121230 -9606 100130701 LOC100130701 - - - 3 3q13.33 uncharacterized LOC100130701 protein-coding - - - uncharacterized protein LOC100130701 20120818 -9606 100130704 LOC100130704 - - - 7 7q32.3 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo - - - - 20121230 -9606 100130705 LOC100130705 - - - 7 7q32.1 uncharacterized LOC100130705 protein-coding - - - uncharacterized protein LOC100130705 20121230 -9606 100130708 ANP32BP2 - - HGNC:38552 22 22q13.31 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 2 pseudo ANP32BP2 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 2 O - 20121230 -9606 100130713 LOC100130713 - - - 19 19q13.2 uncharacterized LOC100130713 unknown - - - - 20120725 -9606 100130714 LOC100130714 - - - 1 1p34.1 metaxin 3 pseudogene pseudo - - - - 20121230 -9606 100130717 CECR5-AS1 - CECR4|NCRNA00017 HGNC:1842 22 22q11.1 CECR5 antisense RNA 1 miscRNA CECR5-AS1 CECR5 antisense RNA 1 O - 20121230 -9606 100130718 RPL34P26 - RPL34_12_1312 HGNC:36100 13 13q14.3 ribosomal protein L34 pseudogene 26 pseudo RPL34P26 ribosomal protein L34 pseudogene 26 O - 20121230 -9606 100130719 UQCRBP2 - - HGNC:12584 1 1q23.3 ubiquinol-cytochrome c reductase binding protein pseudogene 2 pseudo UQCRBP2 ubiquinol-cytochrome c reductase binding protein pseudogene 2 O - 20121230 -9606 100130721 RSL24D1P3 - - HGNC:37883 7 7q11.21 ribosomal L24 domain containing 1 pseudogene 3 pseudo RSL24D1P3 ribosomal L24 domain containing 1 pseudogene 3 O - 20121230 -9606 100130724 LOC100130724 - - - X Xq12 cyclin Y-like pseudogene pseudo - - - - 20121230 -9606 100130731 LOC100130731 - - - 2 2p25.1 proteasome (prosome, macropain) subunit, beta type, 1 pseudogene pseudo - - - - 20121230 -9606 100130733 LRRC70 UNQ1891 SLRN HGNC:35155|Ensembl:ENSG00000186105|Vega:OTTHUMG00000154401 5 5q12.1 leucine rich repeat containing 70 protein-coding LRRC70 leucine rich repeat containing 70 O leucine-rich repeat-containing protein 70|synleurin 20121230 -9606 100130741 LOC100130741 - - - 7 7q36.3 uncharacterized LOC100130741 protein-coding - - - - 20120511 -9606 100130742 LRRC69 - - HGNC:34303|Ensembl:ENSG00000214954|Vega:OTTHUMG00000164023 8 8q21.3 leucine rich repeat containing 69 protein-coding LRRC69 leucine rich repeat containing 69 O leucine-rich repeat-containing protein 69 20121230 -9606 100130744 LOC100130744 - - - 5 5p15.2 uncharacterized LOC100130744 miscRNA - - - - 20121230 -9606 100130745 LOC100130745 - - - 7 7p22.3 uncharacterized LOC100130745 unknown - - - - 20120511 -9606 100130746 LOC100130746 - - - 5 5p14.2 AKT interacting protein pseudogene pseudo - - - - 20121230 -9606 100130747 LOC100130747 - - - 11 11p14.3 N-acetylneuraminic acid phosphatase pseudogene pseudo - - - - 20121230 -9606 100130748 LOC100130748 - - - 5 5p15.33 3-hydroxyisobutyryl-Coenzyme A hydrolase pseudogene pseudo - - - - 20121230 -9606 100130750 RPS8P9 - RPS8_4_974 HGNC:35524 9 9p13.3 ribosomal protein S8 pseudogene 9 pseudo RPS8P9 ribosomal protein S8 pseudogene 9 O - 20121230 -9606 100130756 UQCRHP1 - Em:AF129756.18|UQCRHP5 HGNC:31341 6 6p21.33 ubiquinol-cytochrome c reductase hinge protein pseudogene 1 pseudo UQCRHP1 ubiquinol-cytochrome c reductase hinge protein pseudogene 1 O - 20121230 -9606 100130758 METTL15P1 - METT5D2 HGNC:31926 3 3q25.31 methyltransferase like 15 pseudogene 1 pseudo METTL15P1 methyltransferase like 15 pseudogene 1 O - 20121230 -9606 100130760 LOC100130760 - - - 3 3q21.3 jumonji domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100130761 LOC100130761 - - - 2 2q24.2 uncharacterized LOC100130761 protein-coding - - - - 20120511 -9606 100130766 LOC100130766 - - - 2 2q24.1 metastasis associated 1 family, member 3 pseudogene pseudo - - - - 20121230 -9606 100130768 LOC100130768 - - - 2 2q14.3 uncharacterized LOC100130768 unknown - - - - 20120511 -9606 100130771 EFCAB10 - - HGNC:34531 7 7q22.3 EF-hand calcium binding domain 10 miscRNA EFCAB10 EF-hand calcium binding domain 10 O - 20121230 -9606 100130775 RPS27P23 - RPS27_13_1271 HGNC:35716 12 12q23.2 ribosomal protein S27 pseudogene 23 pseudo RPS27P23 ribosomal protein S27 pseudogene 23 O - 20121230 -9606 100130776 LOC100130776 hCG_2014417 - - 12 12q14.1 uncharacterized LOC100130776 miscRNA - - - - 20121230 -9606 100130777 LOC100130777 - - - 1 - 60S ribosomal protein L34-like pseudo - - - - 20121102 -9606 100130778 LOC100130778 - - - 12 12q24.33 uncharacterized LOC100130778 protein-coding - - - - 20120511 -9606 100130782 RPS15AP15 - RPS15A_6_237 HGNC:35640 2 2p14 ribosomal protein S15a pseudogene 15 pseudo RPS15AP15 ribosomal protein S15a pseudogene 15 O - 20121230 -9606 100130783 LOC100130783 - - - 11 11q24.3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 pseudogene pseudo - - - - 20121230 -9606 100130785 SALL4P5 - - HGNC:39822 3 3p24.3 sal-like 4 (Drosophila) pseudogene 5 pseudo SALL4P5 sal-like 4 (Drosophila) pseudogene 5 O - 20121230 -9606 100130786 RPS3AP22 - RPS3A_9_594 HGNC:36573 5 5q14.3 ribosomal protein S3a pseudogene 22 pseudo RPS3AP22 ribosomal protein S3a pseudogene 22 O - 20121230 -9606 100130791 LOC100130791 - - - Un - uncharacterized LOC100130791 pseudo - - - - 20121102 -9606 100130792 RPL29P27 - RPL29_13_1221 HGNC:35551 12 12p11.22 ribosomal protein L29 pseudogene 27 pseudo RPL29P27 ribosomal protein L29 pseudogene 27 O - 20121230 -9606 100130794 NDUFS5P7 - - HGNC:44045 17 17q11.2 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 7 pseudo NDUFS5P7 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 7 O - 20121230 -9606 100130798 LOC100130798 - - - 5 5q35.3 uncharacterized LOC100130798 unknown - - - - 20120815 -9606 100130799 SRSF10P1 - FUSIP1P|HsT2687|SFRS13AP1 HGNC:31002 18 18q21.2 serine/arginine-rich splicing factor 10 pseudogene 1 pseudo SRSF10P1 serine/arginine-rich splicing factor 10 pseudogene 1 O - 20121230 -9606 100130801 LOC100130801 - - - 9 9p23 lupus La protein-like pseudo - - - - 20121209 -9606 100130802 RPL39P13 - RPL39_3_72 HGNC:36705 1 1p22.1 ribosomal protein L39 pseudogene 13 pseudo RPL39P13 ribosomal protein L39 pseudogene 13 O - 20121230 -9606 100130803 UBL5P1 - - HGNC:44639 5 5p13.3 ubiquitin-like 5 pseudogene 1 pseudo UBL5P1 ubiquitin-like 5 pseudogene 1 O - 20121230 -9606 100130811 LOC100130811 - - - 14 - Ig heavy chain V-I region V35-like other - - - - 20121102 -9606 100130815 LOC100130815 - - - 14 14q32.2 uncharacterized LOC100130815 unknown - - - - 20121230 -9606 100130817 LOC100130817 - - - 16 16q13 uncharacterized LOC100130817 protein-coding - - - - 20120511 -9606 100130820 CCNG1P1 - - HGNC:39177 6 6q23.2 cyclin G1 pseudogene 1 pseudo CCNG1P1 cyclin G1 pseudogene 1 O - 20121230 -9606 100130821 LOC100130821 - - - 3 3p12.2 oxysterol binding protein-like 9 pseudogene pseudo - - - - 20121230 -9606 100130823 RPS17P9 - RPS17_3_404 HGNC:36160 3 3q22.1 ribosomal protein S17 pseudogene 9 pseudo RPS17P9 ribosomal protein S17 pseudogene 9 O - 20121230 -9606 100130827 SGK110 - - Ensembl:ENSG00000231274|Vega:OTTHUMG00000155831 19 19q13.42 putative uncharacterized serine/threonine-protein kinase SgK110-like protein-coding - - - Sugen kinase 110|putative uncharacterized serine/threonine-protein kinase SgK110 20121230 -9606 100130841 LOC100130841 - - - 2 2p24.1 Mdm2, p53 E3 ubiquitin protein ligase homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100130842 LOC100130842 - - - 2 2p22.3 small integral membrane protein 7 pseudogene pseudo - - - - 20121230 -9606 100130843 LOC100130843 - - - X Xq21.1 SPRY domain containing 7 pseudogene pseudo - - - - 20121230 -9606 100130848 TSPY20P - - HGNC:38093 Y Yp11.2 testis specific protein, Y-linked 20, pseudogene pseudo TSPY20P testis specific protein, Y-linked 20, pseudogene O - 20121230 -9606 100130849 LOC100130849 - - - 7 7p11.2 phosphorylase kinase, gamma 1 (muscle) pseudogene pseudo - - - - 20121230 -9606 100130854 LOC100130854 - - - 19 19p13.2 zinc finger protein 562 pseudogene pseudo - - - - 20121230 -9606 100130855 LOC100130855 - - - 15 15q22.31 uncharacterized LOC100130855 miscRNA - - - - 20121230 -9606 100130856 LOC100130856 - - - 19 19p13.3 uncharacterized LOC100130856 unknown - - - - 20121120 -9606 100130857 LOC100130857 - - - 15 15q13.3 uncharacterized LOC100130857 protein-coding - - - - 20120511 -9606 100130861 LOC100130861 - - - 8 8q11.1 zinc finger protein 736 pseudogene pseudo - - - - 20121230 -9606 100130863 ZNF840 - C20orf157|ZNF840P|dJ981L23.3 HGNC:34344 20 20q13.12 zinc finger protein 840 protein-coding ZNF840 zinc finger protein 840 O putative zinc finger protein 840|zinc finger protein 840 (pseudogene)|zinc finger protein 840, pseudogene 20121211 -9606 100130865 LOC100130865 - - - 4 4p16.3 uncharacterized LOC100130865 protein-coding - - - - 20120511 -9606 100130866 IFNWP15 - - HGNC:5449 9 9p22 interferon, omega 1 pseudogene 15 pseudo IFNWP15 interferon, omega 1 pseudogene 15 O - 20121230 -9606 100130871 LOC100130871 - - - 9 9p13.1 armadillo repeat-containing protein 8-like pseudo - - - - 20121230 -9606 100130872 LOC100130872 - - - 4 4p16.3 uncharacterized LOC100130872 miscRNA - - - - 20121230 -9606 100130873 CARM1P1 RP11-255J3.1 CARM1L HGNC:23392 9 9p24.2 coactivator-associated arginine methyltransferase 1 pseudogene 1 pseudo CARM1P1 coactivator-associated arginine methyltransferase 1 pseudogene 1 O - 20121230 -9606 100130876 LOC100130876 - - - 17 17p13.3 uncharacterized LOC100130876 unknown - - - - 20120726 -9606 100130878 LOC100130878 - - - 6 - uncharacterized LOC100130878 pseudo - - - - 20121102 -9606 100130879 LOC100130879 - - - 10 10q22.3 zinc and ring finger 2 pseudogene pseudo - - - - 20121230 -9606 100130880 LOC100130880 - - - 7 7q33 uncharacterized LOC100130880 protein-coding - - - uncharacterized protein LOC100130880 20121230 -9606 100130881 LOC100130881 - - - 10 10q11.21 zinc finger protein 12 pseudogene pseudo - - - - 20121230 -9606 100130887 LOC100130887 - - - 10 10q26.13 uncharacterized LOC100130887 miscRNA - - - - 20121230 -9606 100130889 PSORS1C3 DAQB-185I1.1 AB023059.1|NCRNA00196 HGNC:17203 6 6p21.33 psoriasis susceptibility 1 candidate 3 (non-protein coding) miscRNA PSORS1C3 psoriasis susceptibility 1 candidate 3 (non-protein coding) O - 20121230 -9606 100130890 TSTD3 - - HGNC:40910 6 6q16.2 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 protein-coding TSTD3 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 O rhodanese domain-containing protein 3|thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3 20121230 -9606 100130891 LOC100130891 - - - 8 8p21.1 PDZ and LIM domain 7 (enigma) pseudogene pseudo - - - - 20121230 -9606 100130892 RPL7P32 - RPL7P|RPL7_15_834 HGNC:35692 7 7q31.1 ribosomal protein L7 pseudogene 32 pseudo RPL7P32 ribosomal protein L7 pseudogene 32 O - 20121230 -9606 100130894 LOC100130894 - - - 16 16q22.1-q22.2 uncharacterized LOC100130894 miscRNA - - - - 20121230 -9606 100130898 FLYWCH1P1 - - HGNC:38033 3 3q26.33 FLYWCH-type zinc finger 1 pseudogene 1 pseudo FLYWCH1P1 FLYWCH-type zinc finger 1 pseudogene 1 O - 20121230 -9606 100130899 LOC100130899 - - - 22 22q13.1 uncharacterized LOC100130899 miscRNA - - - - 20121230 -9606 100130909 LOC100130909 - - - 7 7p11.2 ribonuclease T2 pseudogene pseudo - - - - 20121230 -9606 100130913 LOC100130913 - - - 7 7p11.2 uncharacterized LOC100130913 unknown - - - - 20120511 -9606 100130916 LOC100130916 UNQ5836 - - 9 9q22.33 HSAL5836 unknown - - - - 20120710 -9606 100130920 LOC100130920 - - - 10 10p15.1 uncharacterized LOC100130920 protein-coding - - - - 20120511 -9606 100130921 LOC100130921 - - - 2 2p21 uncharacterized LOC100130921 protein-coding - - - - 20121209 -9606 100130922 RPL22P22 - RPL22_10_1790 HGNC:36109 X Xq21.1 ribosomal protein L22 pseudogene 22 pseudo RPL22P22 ribosomal protein L22 pseudogene 22 O - 20121230 -9606 100130923 PSMA2P1 - - HGNC:43832 11 11q14.2 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 1 pseudo PSMA2P1 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 1 O - 20121230 -9606 100130924 LOC100130924 - - - 3 3p25.2 uncharacterized LOC100130924 unknown - - - - 20120511 -9606 100130927 LOC100130927 - - - 6 6p25.2 uncharacterized LOC100130927 protein-coding - - - - 20120511 -9606 100130929 RPL5P33 - RPL5_18_1557 HGNC:36703 17 17q21.33 ribosomal protein L5 pseudogene 33 pseudo RPL5P33 ribosomal protein L5 pseudogene 33 O - 20121230 -9606 100130930 LOC100130930 - - - 19 19p13.3 uncharacterized LOC100130930 unknown - - - - 20121018 -9606 100130931 LOC100130931 - - - 17 17q11.2 uncharacterized LOC100130931 unknown - - - - 20120511 -9606 100130932 LOC100130932 - - - 19 19p13.12 small nuclear ribonucleoprotein polypeptide G pseudogene pseudo - - - - 20121230 -9606 100130933 SMIM6 hCG_1643808 C17orf110 HGNC:40032|Ensembl:ENSG00000259120|Vega:OTTHUMG00000179796 17 - small integral membrane protein 6 protein-coding SMIM6 small integral membrane protein 6 O putative uncharacterized protein C17orf110 20121230 -9606 100130934 ZNF663 - - HGNC:25342 20 20q13.12 zinc finger protein 663 pseudo ZNF663 zinc finger protein 663 O - 20121230 -9606 100130935 CSAG4 - - HGNC:20923 X Xq28 CSAG family, member 4 (pseudogene) pseudo CSAG4 CSAG family, member 4 (pseudogene) O - 20121230 -9606 100130936 LOC100130936 - - - 20 20q12 acireductone dioxygenase 1 pseudogene pseudo - - - - 20121230 -9606 100130938 LOC100130938 - - - 18 18q21.33 uncharacterized LOC100130938 miscRNA - - - - 20121209 -9606 100130950 LOC100130950 - - - 17 17p13.2 uncharacterized LOC100130950 miscRNA - - - - 20121230 -9606 100130954 LOC100130954 - - - 9 9q34.3 uncharacterized LOC100130954 miscRNA - - - - 20121230 -9606 100130958 SYCE1L - MRP2 HGNC:37236|Ensembl:ENSG00000205078|Vega:OTTHUMG00000176809 16 16q23.1 synaptonemal complex central element protein 1-like protein-coding SYCE1L synaptonemal complex central element protein 1-like O meiosis-related protein 20121230 -9606 100130962 ATP5G1P7 - - HGNC:39510 10 10q22.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 7 pseudo ATP5G1P7 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 7 O - 20121230 -9606 100130963 LOC100130963 - - - 3 3q11.2 ribosomal protein L38 pseudogene pseudo - - - - 20121230 -9606 100130964 LOC100130964 - - - 8 8p11.22 ADAM metallopeptidase domain 3A-like miscRNA - - - - 20121230 -9606 100130967 C6orf99 XXyac-YR21IF11.1 yR211F11.1 HGNC:21179 6 6q25.3 chromosome 6 open reading frame 99 protein-coding C6orf99 chromosome 6 open reading frame 99 O putative uncharacterized protein C6orf99 20121230 -9606 100130968 RPL7L1P4 - - HGNC:39486 5 5q23.1 ribosomal protein L7-like 1 pseudogene 4 pseudo RPL7L1P4 ribosomal protein L7-like 1 pseudogene 4 O - 20121230 -9606 100130970 LOC100130970 - - - 10 10q23.33 C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100130972 PPP1R2P6 - - HGNC:16321 7 7q34 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 6 pseudo PPP1R2P6 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 6 O - 20121230 -9606 100130976 LOC100130976 - - - 15 15q26.2 uncharacterized LOC100130976 protein-coding - - - - 20120511 -9606 100130980 RPS2P35 - RPS2_12_1000 HGNC:36757 9 9q31.1 ribosomal protein S2 pseudogene 35 pseudo RPS2P35 ribosomal protein S2 pseudogene 35 O - 20121230 -9606 100130983 RPL26P28 - RPL26_8_1018 HGNC:35776 10 10p15.1 ribosomal protein L26 pseudogene 28 pseudo RPL26P28 ribosomal protein L26 pseudogene 28 O - 20121230 -9606 100130987 LOC100130987 - - - 11 11q13.2 uncharacterized LOC100130987 miscRNA - - - - 20121230 -9606 100130988 C7orf72 tcag7.1071 - HGNC:22564|Ensembl:ENSG00000164500|Vega:OTTHUMG00000155883 7 7p12.2 chromosome 7 open reading frame 72 protein-coding C7orf72 chromosome 7 open reading frame 72 O uncharacterized protein C7orf72 20121230 -9606 100130990 LOC100130990 - - - 5 5q11.2 zinc finger protein 561-like pseudo - - - - 20121230 -9606 100130992 LOC100130992 - - - 10 10p12.31 uncharacterized LOC100130992 miscRNA - - - - 20121230 -9606 100130994 UQCRFS1P3 - - HGNC:39173 6 6p22.3 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 3 pseudo UQCRFS1P3 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 3 O - 20121230 -9606 100130995 ZNF969P - - HGNC:44211 4 4q25 zinc finger protein 969, pseudogene pseudo ZNF969P zinc finger protein 969, pseudogene O - 20121230 -9606 100130996 LOC100130996 - - - 1 1q25.3 yippee-like 5 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100131000 LOC100131000 - - - 17 17q25.3 uncharacterized LOC100131000 protein-coding - - - - 20120511 -9606 100131004 LOC100131004 - - - 17 17q24.1 uncharacterized LOC100131004 protein-coding - - - - 20120511 -9606 100131011 LOC100131011 - - - 18 18q22.1 myotubularin related protein 14 pseudogene pseudo - - - - 20121230 -9606 100131012 YBX1P4 - - HGNC:42425 7 7q36.1 Y box binding protein 1 pseudogene 4 pseudo YBX1P4 Y box binding protein 1 pseudogene 4 O - 20121230 -9606 100131013 LOC100131013 - - - 8 8q12.1 ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 100131015 LOC100131015 - - - 2 2q36.3 uncharacterized LOC100131015 protein-coding - - - - 20120508 -9606 100131017 ZNF316 - MZF-3|ZNF853 HGNC:13843 7 7p22.1 zinc finger protein 316 unknown ZNF316 zinc finger protein 316 O - 20121222 -9606 100131020 RPL9P23 - RPL9_5_1139 HGNC:36807 11 11p12 ribosomal protein L9 pseudogene 23 pseudo RPL9P23 ribosomal protein L9 pseudogene 23 O - 20121230 -9606 100131023 LOC100131023 - - - 11 11p12 uncharacterized LOC100131023 unknown - - - - 20120511 -9606 100131027 SLC25A5P4 RP11-640E11.1 - HGNC:35471 13 13q21.1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 4 pseudo SLC25A5P4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 4 O - 20121230 -9606 100131029 LOC100131029 - - - X Xq23 transportin 3 pseudogene pseudo - - - - 20121230 -9606 100131031 ANKRD18EP - - HGNC:43609 6 6p21.2 ankyrin repeat domain 18E, pseudogene pseudo ANKRD18EP ankyrin repeat domain 18E, pseudogene O uncharacterized protein LOC100131031 20121230 -9606 100131032 LOC100131032 - - - 1 1q32.2 uncharacterized LOC100131032 protein-coding - - - - 20120511 -9606 100131033 PPIGP1 - - HGNC:34231 5 5q33.2 peptidylprolyl isomerase G (cyclophilin G) pseudogene 1 pseudo PPIGP1 peptidylprolyl isomerase G (cyclophilin G) pseudogene 1 O - 20121230 -9606 100131034 LOC100131034 - - - 14 14q32.33 uncharacterized LOC100131034 protein-coding - - - - 20120511 -9606 100131036 HMGB3P28 - - HGNC:39320 18 18p11.21 high mobility group box 3 pseudogene 28 pseudo HMGB3P28 high mobility group box 3 pseudogene 28 O - 20121230 -9606 100131038 LOC100131038 - - - 4 4q32.1 GC-rich promoter binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100131041 LOC100131041 - - - 6 6q24.2 FK506 binding protein 7 pseudogene pseudo - - - - 20121230 -9606 100131043 LOC100131043 - - - 6 6p21.2 uncharacterized LOC100131043 unknown - - - - 20120511 -9606 100131046 SALL4P3 - - HGNC:39820 16 16p12.3 sal-like 4 (Drosophila) pseudogene 3 pseudo SALL4P3 sal-like 4 (Drosophila) pseudogene 3 O - 20121230 -9606 100131047 LOC100131047 - - - 6 6p21.2 uncharacterized LOC100131047 miscRNA - - - - 20121230 -9606 100131048 LOC100131048 - - - 2 2q21.1 uncharacterized LOC100131048 unknown - - - - 20120511 -9606 100131051 LOC100131051 - - - 2 2q32.1 mediator complex subunit 28 pseudogene pseudo - - - - 20121230 -9606 100131053 LOC100131053 - - - 1 1p36.13 uncharacterized LOC100131053 unknown - - - - 20120511 -9606 100131055 RPS4XP15 - RPS4P15|RPS4X_7_1265 HGNC:36308 12 12q21.32 ribosomal protein S4X pseudogene 15 pseudo RPS4XP15 ribosomal protein S4X pseudogene 15 O - 20121230 -9606 100131060 LOC100131060 - - - 1 1p32.1 uncharacterized LOC100131060 miscRNA - - - - 20121230 -9606 100131065 VN1R38P - - HGNC:37358 7 7q11.21 vomeronasal 1 receptor 38 pseudogene pseudo VN1R38P vomeronasal 1 receptor 38 pseudogene O - 20121230 -9606 100131066 LOC100131066 - - - 5 5q15 uncharacterized LOC100131066 unknown - - - - 20120511 -9606 100131067 LOC100131067 - - - 5 5q14.1 uncharacterized LOC100131067 miscRNA - - - - 20121230 -9606 100131068 ERVI-1 - - HGNC:39052 9 - endogenous retrovirus group I, member 1 unknown ERVI-1 endogenous retrovirus group I, member 1 O - 20121017 -9606 100131069 LOC100131069 - - - X Xq13.1 coiled-coil domain containing 53 pseudogene pseudo - - - - 20121230 -9606 100131072 LOC100131072 - - - X Xq21.33 karyopherin (importin) beta 1 pseudogene pseudo - - - - 20121230 -9606 100131077 OK/SW-CL.36 - - - 4 4q21.23 OK/SW-CL.36 unknown - - - - 20120710 -9606 100131078 LOC100131078 - - - 11 11q14.2 MOB family member 4, phocein pseudogene pseudo - - - - 20121230 -9606 100131080 LOC100131080 - - - 16 16p13.2 ribosomal protein S14 pseudogene pseudo - - - - 20121230 -9606 100131083 RPS8P5 - RPS8_2_374 HGNC:36417 3 3p14.3 ribosomal protein S8 pseudogene 5 pseudo RPS8P5 ribosomal protein S8 pseudogene 5 O - 20121230 -9606 100131084 DNM1P17 RP11-449I17.2 DNM1DN17|DNM1DN17@ HGNC:21134 10 10p11.23 DNM1 pseudogene 17 pseudo DNM1P17 DNM1 pseudogene 17 O - 20121230 -9606 100131085 RPL7P12 - RPL7_3_208 HGNC:36611 2 2p22.2 ribosomal protein L7 pseudogene 12 pseudo RPL7P12 ribosomal protein L7 pseudogene 12 O - 20121230 -9606 100131087 RPLP1P11 - RPLP1_5_1519 HGNC:36196 17 17p12 ribosomal protein, large, P1 pseudogene 11 pseudo RPLP1P11 ribosomal protein, large, P1 pseudogene 11 O - 20121230 -9606 100131089 LOC100131089 - - - 15 15q15.1 uncharacterized LOC100131089 miscRNA - - - - 20121230 -9606 100131092 ISCA1P3 - - HGNC:38024 17 17q22 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 3 pseudo ISCA1P3 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 3 O - 20121230 -9606 100131094 LOC100131094 - - - 19 19p13.3 uncharacterized LOC100131094 protein-coding - - - uncharacterized protein LOC100131094 20121230 -9606 100131096 LOC100131096 - - - 17 17q25.3 uncharacterized LOC100131096 miscRNA - - - - 20121230 -9606 100131099 LOC100131099 - - - 20 20q13.33 uncharacterized LOC100131099 protein-coding - - - - 20120511 -9606 100131101 LOC100131101 - - - 2 2q37.2 uncharacterized LOC100131101 protein-coding - - - - 20120511 -9606 100131103 TATDN2P1 - - HGNC:39254 X Xp11.3 TatD DNase domain containing 2 pseudogene 1 pseudo TATDN2P1 TatD DNase domain containing 2 pseudogene 1 O - 20121230 -9606 100131107 LOC100131107 - - - 1 1q21.3 UPF0607 protein ENSP00000383783-like protein-coding - - - Putative UPF0607 protein ENSP00000383783 20121230 -9606 100131114 LOC100131114 - - - 2 2q12.2 serine/arginine-rich splicing factor 3-like pseudo - - - - 20121209 -9606 100131117 ZBTB20-AS1 - - HGNC:40640 3 3q13.31 ZBTB20 antisense RNA 1 miscRNA ZBTB20-AS1 ZBTB20 antisense RNA 1 O - 20121230 -9606 100131118 VN1R67P - - HGNC:37387 16 16p11.2 vomeronasal 1 receptor 67 pseudogene pseudo VN1R67P vomeronasal 1 receptor 67 pseudogene O - 20121230 -9606 100131120 LOC100131120 - - - 6 6q23.3 PRO1828 unknown - - - - 20120710 -9606 100131124 LOC100131124 - - - 6 6q15 adaptor-related protein complex 4, sigma 1 subunit pseudogene pseudo - - - - 20121230 -9606 100131126 LOC100131126 - - - 16 16q23.1 leucine rich repeat containing 59 pseudogene pseudo - - - - 20121230 -9606 100131127 LOC100131127 - - - 8 8p21.1 degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100131129 LOC100131129 - - - 16 16q24.1 uncharacterized LOC100131129 protein-coding - - - - 20120511 -9606 100131130 HNRNPA1P13 - - HGNC:39131 5 5q31.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 13 pseudo HNRNPA1P13 heterogeneous nuclear ribonucleoprotein A1 pseudogene 13 O - 20121230 -9606 100131131 LOC100131131 UNQ9419 - - 2 2q12.1 AHPA9419 unknown - - - - 20121230 -9606 100131132 LOC100131132 - - - 10 10q22.3 uncharacterized LOC100131132 unknown - - - - 20121230 -9606 100131135 LOC100131135 - - - 4 4q32.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene pseudo - - - - 20121230 -9606 100131137 BSPH1 - BSP1|ELSPBP2 HGNC:33906|MIM:612213|Ensembl:ENSG00000188334 19 19q13.33 binder of sperm protein homolog 1 protein-coding BSPH1 binder of sperm protein homolog 1 O binder of sperm 1|bovine seminal plasma protein homolog 1|bovine seminal plasma protein-like 1|epididymal sperm binding protein 2 20121230 -9606 100131138 LOC100131138 - - - 12 12q24.11 uncharacterized LOC100131138 miscRNA - - - - 20121230 -9606 100131141 VN1R95P - - HGNC:37415 19 19q11 vomeronasal 1 receptor 95 pseudogene pseudo VN1R95P vomeronasal 1 receptor 95 pseudogene O - 20121230 -9606 100131143 RPL23AP19 - RPL23A_2_8 HGNC:36708 1 1p36.23 ribosomal protein L23a pseudogene 19 pseudo RPL23AP19 ribosomal protein L23a pseudogene 19 O - 20121230 -9606 100131146 LOC100131146 - - - 8 8q24.3 DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene pseudo - - - - 20121230 -9606 100131150 LOC100131150 - - - 11 11q13.1 uncharacterized LOC100131150 protein-coding - - - - 20121018 -9606 100131151 RPLP0P8 - RPLP0_3_381 HGNC:35867 3 3p14.1 ribosomal protein, large, P0 pseudogene 8 pseudo RPLP0P8 ribosomal protein, large, P0 pseudogene 8 O - 20121230 -9606 100131158 LOC100131158 - - - 4 4q25 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa pseudogene pseudo - - - - 20121230 -9606 100131159 LOC100131159 - - - 6 6p22.3 PERP, TP53 apoptosis effector pseudogene pseudo - - - - 20121230 -9606 100131160 RPL39P20 - RPL39_10_584 HGNC:36366 5 5q14.1 ribosomal protein L39 pseudogene 20 pseudo RPL39P20 ribosomal protein L39 pseudogene 20 O - 20121230 -9606 100131161 RPSAP39 - RPSA_12_495 HGNC:37040 4 4q21.21 ribosomal protein SA pseudogene 39 pseudo RPSAP39 ribosomal protein SA pseudogene 39 O - 20121230 -9606 100131170 LOC100131170 - - - 17 17q25.3 uncharacterized LOC100131170 protein-coding - - - - 20120511 -9606 100131173 RPS29P12 - RPS29_9_646 HGNC:36458 5 5q35.3 ribosomal protein S29 pseudogene 12 pseudo RPS29P12 ribosomal protein S29 pseudogene 12 O - 20121230 -9606 100131174 LOC100131174 - - - 20 20q13.33 uncharacterized LOC100131174 unknown - - - - 20121230 -9606 100131176 WDR86-AS1 - - HGNC:41186 7 7q36.1 WDR86 antisense RNA 1 miscRNA WDR86-AS1 WDR86 antisense RNA 1 O - 20121230 -9606 100131180 LOC100131180 - - - 9 9p21.1 uncharacterized LOC100131180 unknown - - - - 20120511 -9606 100131183 HMGN2P30 - - HGNC:39397 7 7p14.1 high mobility group nucleosomal binding domain 2 pseudogene 30 pseudo HMGN2P30 high mobility group nucleosomal binding domain 2 pseudogene 30 O - 20121230 -9606 100131187 TSTD1 RP11-544M22.4 KAT HGNC:35410|Ensembl:ENSG00000215845|Vega:OTTHUMG00000031476 1 1q23.3 thiosulfate sulfurtransferase (rhodanese)-like domain containing 1 protein-coding TSTD1 thiosulfate sulfurtransferase (rhodanese)-like domain containing 1 O putative thiosulfate sulfurtransferase KAT|thiosulfate sulfurtransferase KAT, putative|thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 20121230 -9606 100131188 LIPT1P1 - - HGNC:39278 13 13q33.1 lipoyltransferase 1 pseudogene 1 pseudo LIPT1P1 lipoyltransferase 1 pseudogene 1 O - 20121230 -9606 100131189 SSR1P2 - - HGNC:39274 13 13q22.2 signal sequence receptor, alpha pseudogene 2 pseudo SSR1P2 signal sequence receptor, alpha pseudogene 2 O - 20121230 -9606 100131190 LOC100131190 - - - 21 21q22.3 uncharacterized LOC100131190 protein-coding - - - - 20120511 -9606 100131193 KIAA1984-AS1 hCG_2022318 - HGNC:44105 9 9q34.3 KIAA1984 antisense RNA 1 miscRNA KIAA1984-AS1 KIAA1984 antisense RNA 1 O - 20121230 -9606 100131195 LOC100131195 - - - 10 10q11.21 uncharacterized LOC100131195 protein-coding - - - - 20120511 -9606 100131196 RPS25P8 - RPS25_6_1012 HGNC:36075 9 9q33.2 ribosomal protein S25 pseudogene 8 pseudo RPS25P8 ribosomal protein S25 pseudogene 8 O - 20121230 -9606 100131200 LOC100131200 - - - X Xq23 mannose-6-phosphate receptor (cation dependent) pseudogene pseudo - - - - 20121230 -9606 100131205 RPL21P28 - RPL21_8_160 HGNC:36258 1 1q32.3 ribosomal protein L21 pseudogene 28 pseudo RPL21P28 ribosomal protein L21 pseudogene 28 O - 20121230 -9606 100131206 RPL29P16 - RPL29_9_696 HGNC:36898 6 6p21.1 ribosomal protein L29 pseudogene 16 pseudo RPL29P16 ribosomal protein L29 pseudogene 16 O - 20121230 -9606 100131207 DNAJA1P2 - - HGNC:39338 2 2q23.3 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 2 pseudo DNAJA1P2 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 2 O - 20121230 -9606 100131208 SNAP25-AS1 - - HGNC:44312 20 20p12.2 SNAP25 antisense RNA 1 miscRNA SNAP25-AS1 SNAP25 antisense RNA 1 O - 20121230 -9606 100131211 TMEM194B - - HGNC:33700|Ensembl:ENSG00000189362|Vega:OTTHUMG00000154454 2 2q32.2 transmembrane protein 194B protein-coding TMEM194B transmembrane protein 194B O UPF0571 transmembrane protein 20121230 -9606 100131213 ZNF503-AS2 - C10orf41|NCRNA00245 HGNC:23525 10 10q22.2 ZNF503 antisense RNA 2 miscRNA ZNF503-AS2 ZNF503 antisense RNA 2 O - 20121230 -9606 100131216 LOC100131216 - - - 3 3q26.32 transmembrane protein 38B pseudogene pseudo - - - - 20121230 -9606 100131223 LOC100131223 - - - 1 1p35.3 ADP-ribosylation factor-like 8B pseudogene pseudo - - - - 20121230 -9606 100131227 GAFA1 - - - 14 14q11.2 FGF2-associated protein GAFA1 unknown - - - - 20120610 -9606 100131229 RPL6P17 - RPL6_4_660 HGNC:36914 6 6p23 ribosomal protein L6 pseudogene 17 pseudo RPL6P17 ribosomal protein L6 pseudogene 17 O - 20121230 -9606 100131230 RPL30P4 - RPL30_3_359 HGNC:35871 3 3p22.3 ribosomal protein L30 pseudogene 4 pseudo RPL30P4 ribosomal protein L30 pseudogene 4 O - 20121230 -9606 100131232 LOC100131232 - - - 11 11q13.1 uncharacterized LOC100131232 unknown - - - - 20120511 -9606 100131233 LOC100131233 - - - 11 11q21 AKT interacting protein pseudogene pseudo - - - - 20121230 -9606 100131234 LOC100131234 - - - 1 1q32.1 familial acute myelogenous leukemia related factor miscRNA - - - - 20121230 -9606 100131236 PCBP2P3 - - HGNC:39032 5 5q14.3 poly(rC) binding protein 2 pseudogene 3 pseudo PCBP2P3 poly(rC) binding protein 2 pseudogene 3 O - 20121230 -9606 100131241 LOC100131241 - - - 17 17q24.3 SERPINE1 mRNA binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100131242 LOC100131242 - - - 17 17q25.3 uncharacterized LOC100131242 protein-coding - - - - 20120511 -9606 100131244 ANKRD63 - - HGNC:40027|Ensembl:ENSG00000230778|Vega:OTTHUMG00000176892 15 15q15.1 ankyrin repeat domain 63 protein-coding ANKRD63 ankyrin repeat domain 63 O ankyrin repeat domain-containing protein 63 20121230 -9606 100131246 RPL9P27 - RPL9_12_1427 HGNC:37012 15 15q15.1 ribosomal protein L9 pseudogene 27 pseudo RPL9P27 ribosomal protein L9 pseudogene 27 O - 20121230 -9606 100131249 LOC100131249 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100131250 LOC100131250 - - - 15 15q15.2 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100131252 LOC100131252 - - - 8 8q21.11 family with sequence similarity 213, member A pseudogene pseudo - - - - 20121230 -9606 100131254 LOC100131254 - - - 8 8q11.23 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100131257 LOC100131257 - - - 7 7p22.1 zinc finger protein 655 pseudogene pseudo - - - - 20121230 -9606 100131261 LOC100131261 - - - 1 1p12 proline-rich nuclear receptor coactivator 2 pseudogene pseudo - - - - 20121230 -9606 100131262 LOC100131262 - - - 11 - uncharacterized LOC100131262 unknown - - - - 20121230 -9606 100131264 LOC100131264 - - - 7 7p22.2 prefoldin subunit 4 pseudogene pseudo - - - - 20121230 -9606 100131268 TPT1P1 - TPT1P HGNC:16742 21 21q22.11 tumor protein, translationally-controlled 1 pseudogene 1 pseudo TPT1P1 tumor protein, translationally-controlled 1 pseudogene 1 O - 20121230 -9606 100131270 LOC100131270 - - - 2 2q24.1 uncharacterized LOC100131270 unknown - - - - 20120511 -9606 100131275 NSAP11 - - - 8 8p22 nervous system abundant protein 11 unknown - - - - 20121230 -9606 100131279 LOC100131279 - - - 16 16p11.1 chromosome 2 open reading frame 69 pseudogene pseudo - - - - 20121230 -9606 100131280 LOC100131280 - - - 5 5q22.1 integrin alpha FG-GAP repeat containing 2 pseudogene pseudo - - - - 20121230 -9606 100131281 GLUD1P9 - - HGNC:37696 X Xq23 glutamate dehydrogenase 1 pseudogene 9 pseudo GLUD1P9 glutamate dehydrogenase 1 pseudogene 9 O - 20121230 -9606 100131284 LOC100131284 - - - 2 2q14.3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 pseudogene pseudo - - - - 20121230 -9606 100131286 RPS19P5 - RPS19_1_737 HGNC:35850 6 6q21 ribosomal protein S19 pseudogene 5 pseudo RPS19P5 ribosomal protein S19 pseudogene 5 O - 20121230 -9606 100131289 LOC100131289 - - - 6 6p22.1 uncharacterized LOC100131289 miscRNA - - - - 20121230 -9606 100131291 LOC100131291 - - - 1 1p31.1 actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 100131294 LOC100131294 - - - 12 12q13.2 RAB13, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100131302 PTCD2P1 - - HGNC:31718 14 14q11.2 pentatricopeptide repeat domain 2 pseudogene 1 pseudo PTCD2P1 pentatricopeptide repeat domain 2 pseudogene 1 O - 20121230 -9606 100131303 LOC100131303 - - - 16 16q22.1 uncharacterized LOC100131303 miscRNA - - - - 20120511 -9606 100131306 LOC100131306 - - - 19 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100131309 PRKRIRP9 - - HGNC:39573 4 4p12 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 9 pseudo PRKRIRP9 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 9 O - 20121230 -9606 100131310 LOC100131310 - - - X Xp11.4 uncharacterized LOC100131310 protein-coding - - - - 20120511 -9606 100131315 LOC100131315 - - - 15 15q13.3 uncharacterized LOC100131315 miscRNA - - - - 20120511 -9606 100131320 LOC100131320 - - - 2 2q21.1 uncharacterized LOC100131320 miscRNA - - - - 20121230 -9606 100131327 UQCRC2P1 - - HGNC:44309 3 3p21.31 ubiquinol-cytochrome c reductase core protein II pseudogene 1 pseudo UQCRC2P1 ubiquinol-cytochrome c reductase core protein II pseudogene 1 O - 20121230 -9606 100131328 FAM210CP - - HGNC:44938 10 10p12.1 family with sequence similarity 210, member B pseudogene pseudo FAM210CP family with sequence similarity 210, member C, pseudogene O - 20121230 -9606 100131333 RPL18P6 - RPL18_2_942 HGNC:35528 8 8q23.2 ribosomal protein L18 pseudogene 6 pseudo RPL18P6 ribosomal protein L18 pseudogene 6 O - 20121230 -9606 100131338 RPL15P13 - RPL15_8_1099 HGNC:35915 10 10q25.3 ribosomal protein L15 pseudogene 13 pseudo RPL15P13 ribosomal protein L15 pseudogene 13 O - 20121230 -9606 100131339 RPL32P4 - RPL32L|RPL32_11_924 HGNC:10337 8 8q21.3 ribosomal protein L32 pseudogene 4 pseudo RPL32P4 ribosomal protein L32 pseudogene 4 O - 20121230 -9606 100131340 LOC100131340 - - - X Xq21.32 5'-nucleotidase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100131346 LOC100131346 - - - 22 22q13.33 uncharacterized LOC100131346 unknown - - - - 20120511 -9606 100131347 LOC100131347 - - - 17 17q12 RAD52 motif 1 pseudogene pseudo - - - - 20121230 -9606 100131348 LOC100131348 - - - 1 1p21.1 adaptor-related protein complex 2, beta 1 subunit pseudogene pseudo - - - - 20121230 -9606 100131355 LOC100131355 - - - 9 9q34.11 uncharacterized LOC100131355 protein-coding - - - - 20120511 -9606 100131358 RPL3P12 - RPL3_3_1807 HGNC:36298 X Xq25 ribosomal protein L3 pseudogene 12 pseudo RPL3P12 ribosomal protein L3 pseudogene 12 O - 20121230 -9606 100131360 LOC100131360 - - - 3 3q29 serine/threonine-protein phosphatase 4 regulatory subunit 2-like pseudo - - - - 20121230 -9606 100131361 LOC100131361 - - - 5 5q31.2 uncharacterized LOC100131361 pseudo - - - - 20121209 -9606 100131366 LINC00605 - - HGNC:43928 14 14q32.32 long intergenic non-protein coding RNA 605 miscRNA LINC00605 long intergenic non-protein coding RNA 605 O - 20121230 -9606 100131369 LOC100131369 - - - 12 12p11.1 double homeobox, 4-like pseudogene pseudo - - - - 20121230 -9606 100131370 DDX18P6 - - HGNC:31126 10 10q23.31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 6 pseudo DDX18P6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 6 O - 20121230 -9606 100131372 LOC100131372 - - - 7 - uncharacterized LOC100131372 unknown - - - - 20121230 -9606 100131373 LOC100131373 - - - 2 2p24.1 uncharacterized LOC100131373 unknown - - - - 20121230 -9606 100131374 PABPC1P5 - - HGNC:37985 Y Yq11.21 poly(A) binding protein, cytoplasmic 1 pseudogene 5 pseudo PABPC1P5 poly(A) binding protein, cytoplasmic 1 pseudogene 5 O - 20121209 -9606 100131378 C11orf91 hCG_2033382 - HGNC:34444|Ensembl:ENSG00000205177|Vega:OTTHUMG00000166320 11 11p13 chromosome 11 open reading frame 91 protein-coding C11orf91 chromosome 11 open reading frame 91 O uncharacterized protein C11orf91 20121230 -9606 100131379 RPL36AP1 - RPL36A_19_1371 HGNC:23548 14 14q22.3 ribosomal protein L36a pseudogene 1 pseudo RPL36AP1 ribosomal protein L36a pseudogene 1 O - 20121230 -9606 100131381 LOC100131381 - - - 11 11p11.2 uncharacterized LOC100131381 protein-coding - - - - 20121209 -9606 100131387 RPL39P32 - RPL39_13_1539 HGNC:36959 17 17q12 ribosomal protein L39 pseudogene 32 pseudo RPL39P32 ribosomal protein L39 pseudogene 32 O - 20121230 -9606 100131388 LOC100131388 - - - 19 19q13.31 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa pseudogene pseudo - - - - 20121230 -9606 100131390 SP9 - ZNF990 HGNC:30690|Ensembl:ENSG00000217236|Vega:OTTHUMG00000150371 2 2q31.1 Sp9 transcription factor protein-coding SP9 Sp9 transcription factor O Sp9 transcription factor homolog|transcription factor Sp9|zinc finger protein 990 20121230 -9606 100131392 LOC100131392 - - - 11 - tripartite motif-containing protein 49-like protein 1-like protein-coding - - - - 20121102 -9606 100131393 UBQLN4P2 - - HGNC:38662 2 2q23.3 ubiquilin 4 pseudogene 2 pseudo UBQLN4P2 ubiquilin 4 pseudogene 2 O - 20121230 -9606 100131395 LOC100131395 - - - 8 8p23.3 uncharacterized LOC100131395 unknown - - - - 20121230 -9606 100131396 RPS6P14 - RPS6_6_1039 HGNC:36738 10 10q11.22 ribosomal protein S6 pseudogene 14 pseudo RPS6P14 ribosomal protein S6 pseudogene 14 O - 20121230 -9606 100131411 LOC100131411 - - - 5 5q13.3 zinc finger protein 28 pseudogene pseudo - - - - 20121230 -9606 100131415 LOC100131415 - - - 4 4p16.3 olfactory receptor 7E24-like pseudo - - - - 20121209 -9606 100131418 RPS27P22 - RPS27_12_1218 HGNC:36090 12 12p12.1 ribosomal protein S27 pseudogene 22 pseudo RPS27P22 ribosomal protein S27 pseudogene 22 O - 20121230 -9606 100131425 LOC100131425 - - - 7 7p21.1 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100131429 LOC100131429 - - - 4 4q28.3 armadillo repeat containing 1 pseudogene pseudo - - - - 20121230 -9606 100131432 LOC100131432 - - - 11 11p11.2 uncharacterized LOC100131432 unknown - - - - 20120511 -9606 100131434 LOC100131434 - - - X Xq28 uncharacterized LOC100131434 miscRNA - - - - 20121230 -9606 100131439 CD300LD UNQ9218 CD300D|CLM-4|CMRF35-A4|CMRF35A4 HGNC:16848|Ensembl:ENSG00000204345|Vega:OTTHUMG00000067614 17 17q25.1 CD300 molecule-like family member d protein-coding CD300LD CD300 molecule-like family member d O CD300 antigen-like family member D|CMRF35-like molecule 4|immune receptor CD300d 20121230 -9606 100131440 CDC42P4 - - HGNC:44428 4 4q25 cell division cycle 42 pseudogene 4 pseudo CDC42P4 cell division cycle 42 pseudogene 4 O - 20121230 -9606 100131441 LOC100131441 - - - 4 4q13.1 coiled-coil domain containing 65 pseudogene pseudo - - - - 20121230 -9606 100131442 RCC2P5 - - HGNC:42381 3 3q11.2 regulator of chromosome condensation 2 pseudogene 5 pseudo RCC2P5 regulator of chromosome condensation 2 pseudogene 5 O - 20121230 -9606 100131448 LOC100131448 RP11-560L11.1 - - X Xq22.3 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 pseudogene pseudo - - - - 20121230 -9606 100131451 TLR12P - - HGNC:31754 1 1p35.1 toll-like receptor 12, pseudogene pseudo TLR12P toll-like receptor 12, pseudogene O - 20121230 -9606 100131454 DBIL5P - ELP2P HGNC:38519 17 17p13.3 diazepam binding inhibitor-like 5, pseudogene pseudo DBIL5P diazepam binding inhibitor-like 5, pseudogene O - 20121230 -9606 100131457 SLC25A1P1 - - HGNC:43845 11 11q14.2 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 1 pseudo SLC25A1P1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 1 O - 20121230 -9606 100131460 LOC100131460 - - - 7 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121209 -9606 100131465 LOC100131465 - - - 1 1q44 peroxisomal biogenesis factor 5 pseudogene pseudo - - - - 20121230 -9606 100131467 RPS6P9 - RPS6_4_936 HGNC:35938 8 8q22.3 ribosomal protein S6 pseudogene 9 pseudo RPS6P9 ribosomal protein S6 pseudogene 9 O - 20121230 -9606 100131469 RPSAP62 - RPSA_32_1778 HGNC:35583 X Xp11.22 ribosomal protein SA pseudogene 62 pseudo RPSAP62 ribosomal protein SA pseudogene 62 O - 20121230 -9606 100131470 LOC100131470 - - - 4 4q33 uncharacterized LOC100131470 unknown - - - uncharacterized protein LOC100131470 20120511 -9606 100131471 LOC100131471 - - - 6 6q24.2 presenilins-associated rhomboid-like protein, mitochondrial-like pseudo - - - - 20121230 -9606 100131472 LOC100131472 - - - 7 7p21.3 uncharacterized LOC100131472 unknown - - - - 20120511 -9606 100131478 LOC100131478 - - - 2 2q33.2 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100131479 LOC100131479 - - - 19 19p12 zinc finger protein 430 pseudogene pseudo - - - - 20121230 -9606 100131481 RPL21P38 - RPL21_7_292 HGNC:36349 2 2q31.1 ribosomal protein L21 pseudogene 38 pseudo RPL21P38 ribosomal protein L21 pseudogene 38 O - 20121230 -9606 100131482 LOC100131482 - - - 2 2q31.3 thioredoxin-like 4A pseudogene pseudo - - - - 20121230 -9606 100131490 LOC100131490 - - - 12 - uncharacterized LOC100131490 unknown - - - - 20120710 -9606 100131492 LOC100131492 - - - 2 2q14.3 PP12901 unknown - - - - 20121230 -9606 100131493 ZIK1P1 - - HGNC:38031 X Xq25 zinc finger protein interacting with K protein 1 pseudogene 1 pseudo ZIK1P1 zinc finger protein interacting with K protein 1 pseudogene 1 O - 20121230 -9606 100131495 LOC100131495 - - - 1 1p31.1 nitrilase family, member 2 pseudogene pseudo - - - - 20121230 -9606 100131496 LOC100131496 - - - 20 20q13.12 uncharacterized LOC100131496 miscRNA - - - - 20121230 -9606 100131497 LOC100131497 - - - 14 14q24.3 uncharacterized LOC100131497 miscRNA - - - - 20120710 -9606 100131501 LOC100131501 - - - 11 11q13.2 putative uncharacterized protein UNQ6125/PRO20090-like pseudo - - - - 20121209 -9606 100131503 LOC100131503 - - - 4 4p16.3 putative uncharacterized protein UNQ6125/PRO20090-like pseudo - - - - 20121209 -9606 100131506 LOC100131506 - - - 2 2p25.1 uncharacterized LOC100131506 unknown - - - - 20120710 -9606 100131508 LOC100131508 - - - 6 6q14.1 PRO2122 unknown - - - - 20121006 -9606 100131510 LOC100131510 - - - 2 2p23.3 uncharacterized LOC100131510 unknown - - - - 20121230 -9606 100131514 LOC100131514 - - - Un - uncharacterized LOC100131514 protein-coding - - - - 20121102 -9606 100131515 MST152 - - - 6 6q25.1 MSTP152 unknown - - - - 20121017 -9606 100131520 LOC100131520 - - - 5 5q33.2 ribosomal protein L6 pseudogene pseudo - - - - 20121230 -9606 100131526 RPL26P6 - RPL26_9_1063 HGNC:34023 10 10q22.2 ribosomal protein L26 pseudogene 6 pseudo RPL26P6 ribosomal protein L26 pseudogene 6 O - 20121230 -9606 100131527 RPL19P7 - RPL19_4_388 HGNC:36088 3 3q12 ribosomal protein L19 pseudogene 7 pseudo RPL19P7 ribosomal protein L19 pseudogene 7 O - 20121230 -9606 100131528 LOC100131528 - - - 12 12q14.3 apolipoprotein O pseudogene pseudo - - - - 20121230 -9606 100131529 LOC100131529 - - - 12 12q23.1 family with sequence similarity 60, member A pseudogene pseudo - - - - 20121230 -9606 100131530 LOC100131530 - - - 22 22q13.1 uncharacterized LOC100131530 unknown - - - - 20121230 -9606 100131532 LOC100131532 - - - 6 - uncharacterized LOC100131532 miscRNA - - - - 20121230 -9606 100131533 LOC100131533 - - - 1 1q44 dpy-19-like 4 (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100131535 RPL5P28 - RPL5_11_1110 HGNC:36827 10 10q26.3 ribosomal protein L5 pseudogene 28 pseudo RPL5P28 ribosomal protein L5 pseudogene 28 O - 20121230 -9606 100131536 LOC100131536 - - - 22 22q12.3 tRNA methyltransferase 11 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100131539 ZNF705E - - HGNC:33203 11 11q13.4 zinc finger protein 705E protein-coding ZNF705E zinc finger protein 705E O - 20121230 -9606 100131540 LOC100131540 - - - 9 9q22.1 uncharacterized LOC100131540 unknown - - - - 20120710 -9606 100131541 LOC100131541 UNQ6228 - - 11 11q21 uncharacterized LOC100131541 unknown - - - - 20121230 -9606 100131546 LOC100131546 - - - 2 2q37.1 endothelin-converting enzyme-like 1-like pseudo - - - - 20121230 -9606 100131548 RPS6P4 - RPS6_2_432 HGNC:36548 3 3q26.1 ribosomal protein S6 pseudogene 4 pseudo RPS6P4 ribosomal protein S6 pseudogene 4 O - 20121230 -9606 100131550 CNN2P12 - - HGNC:39834 13 13q11 calponin 2 pseudogene 12 pseudo CNN2P12 calponin 2 pseudogene 12 O - 20121230 -9606 100131551 LOC100131551 - - - 3 3q29 uncharacterized LOC100131551 miscRNA - - - - 20121230 -9606 100131553 LOC100131553 - - - 4 4q34.1 disintegrin and metalloproteinase domain-containing protein 21-like pseudo - - - - 20121230 -9606 100131556 LOC100131556 - - - X Xq13.1 zinc finger CCHC-type and RNA binding motif 1 pseudogene pseudo - - - - 20121230 -9606 100131557 LOC100131557 - - - 11 11p14.3 programmed cell death 2-like pseudogene pseudo - - - - 20121230 -9606 100131561 FKSG29 - - - 13 13q32.3 FKSG29 miscRNA - - - - 20121230 -9606 100131562 LOC100131562 - - - 2 2q31.1 chibby homolog 1 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100131564 LOC100131564 - - - 1 1p22.1 uncharacterized LOC100131564 miscRNA - - - - 20121230 -9606 100131565 LOC100131565 - - - 8 8p22 eukaryotic translation initiation factor 4E pseudogene pseudo - - - - 20121230 -9606 100131568 LOC100131568 - - - 3 3p14.1 RNA binding motif protein 43 pseudogene pseudo - - - - 20121230 -9606 100131572 RPS27P9 - RPS27_1_33 HGNC:36964 1 1p34.3 ribosomal protein S27 pseudogene 9 pseudo RPS27P9 ribosomal protein S27 pseudogene 9 O - 20121230 -9606 100131577 LOC100131577 - - - 2 2q13 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121230 -9606 100131581 LOC100131581 - - - 8 8p23.1 uncharacterized LOC100131581 protein-coding - - - - 20120511 -9606 100131582 LOC100131582 - - - 16 16p13.3 uncharacterized LOC100131582 unknown - - - - 20121017 -9606 100131593 LOC100131593 - - - 8 8q22.3 SAP domain containing ribonucleoprotein pseudogene pseudo - - - - 20121230 -9606 100131597 LOC100131597 - - - 11 11p15.4 phosphorylated adaptor for RNA export pseudogene pseudo - - - - 20121230 -9606 100131599 LOC100131599 - - - 20 20p12.3 uncharacterized LOC100131599 protein-coding - - - - 20120511 -9606 100131604 LOC100131604 - - - 2 2q24.2 uncharacterized LOC100131604 unknown - - - - 20120622 -9606 100131608 LOC100131608 - - Ensembl:ENSG00000255251|Vega:OTTHUMG00000165386 8 8p23.1 uncharacterized LOC100131608 protein-coding - - - - 20121209 -9606 100131609 HNRNPA1P2 - HNRPA1P2|dJ372B18.1 HGNC:13958 6 6p21.32 heterogeneous nuclear ribonucleoprotein A1 pseudogene 2 pseudo HNRNPA1P2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 2 O - 20121230 -9606 100131611 PGAM4P2 - - HGNC:42466 4 4q26 phosphoglycerate mutase family member 4 pseudogene 2 pseudo PGAM4P2 phosphoglycerate mutase family member 4 pseudogene 2 O - 20121230 -9606 100131613 LOC100131613 - - - 12 12q15 PRO1454 unknown - - - - 20120710 -9606 100131614 RPS4XP22 - RPS4P22|RPS4X_8_1621 HGNC:36125 19 19p13.2 ribosomal protein S4X pseudogene 22 pseudo RPS4XP22 ribosomal protein S4X pseudogene 22 O - 20121230 -9606 100131616 CASP3P1 - - HGNC:43596 1 1p31.1 caspase 3, apoptosis-related cysteine peptidase pseudogene 1 pseudo CASP3P1 caspase 3, apoptosis-related cysteine peptidase pseudogene 1 O - 20121230 -9606 100131617 LOC100131617 - - - X Xq26.3 v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) pseudogene pseudo - - - - 20121230 -9606 100131623 LOC100131623 - - - 15 15q14 nuclear transport factor 2 pseudogene pseudo - - - - 20121230 -9606 100131624 LOC100131624 - - - 2 2q12.3 WAS protein family, member 1 pseudogene pseudo - - - - 20121230 -9606 100131625 LOC100131625 - - - 9 9q22.33 ADP-ribosylation factor-like 8B pseudogene pseudo - - - - 20121230 -9606 100131626 LOC100131626 - - - 11 11q23.3 uncharacterized LOC100131626 miscRNA - - - - 20121230 -9606 100131629 ARL2BPP7 - - HGNC:39451 9 9q31.1 ADP-ribosylation factor-like 2 binding protein pseudogene 7 pseudo ARL2BPP7 ADP-ribosylation factor-like 2 binding protein pseudogene 7 O - 20121230 -9606 100131635 LOC100131635 - - - 3 3q27.3 hCG1645011-like miscRNA - - - - 20121230 -9606 100131638 CCT4P2 - CCT4-1P HGNC:35141 X Xq11.2 chaperonin containing TCP1, subunit 4 (delta) pseudogene 2 pseudo CCT4P2 chaperonin containing TCP1, subunit 4 (delta) pseudogene 2 O - 20121230 -9606 100131641 LOC100131641 - - - 16 16p11.2 RNA binding motif protein 22 pseudogene pseudo - - - - 20121230 -9606 100131650 LOC100131650 - - - 17 17q21.31 uncharacterized LOC100131650 unknown - - - - 20120511 -9606 100131652 LOC100131652 - - - X Xq28 MORF4 family-associated protein 1-like pseudo - - - - 20121209 -9606 100131654 LOC100131654 - - - 15 15q26.1 uncharacterized LOC100131654 protein-coding - - - - 20120511 -9606 100131655 LOC100131655 hCG_2045206 - - 18 - uncharacterized LOC100131655 miscRNA - - - - 20121230 -9606 100131656 SDCBPP3 - - HGNC:44687 X Xp11.4 syndecan binding protein (syntenin) pseudogene 3 pseudo SDCBPP3 syndecan binding protein (syntenin) pseudogene 3 O - 20121230 -9606 100131657 LOC100131657 - - - 6 6p21.2 uncharacterized LOC100131657 protein-coding - - - - 20120909 -9606 100131661 FTLP5 - - HGNC:37953 19 19p13.3 ferritin, light polypeptide pseudogene 5 pseudo FTLP5 ferritin, light polypeptide pseudogene 5 O - 20121230 -9606 100131662 LOC100131662 - - - 2 2q11.1 uncharacterized LOC100131662 unknown - - - - 20120511 -9606 100131667 LOC100131667 - - - 22 22q13.1 uncharacterized LOC100131667 protein-coding - - - - 20120511 -9606 100131668 LOC100131668 - - - 16 16p13.3 uncharacterized LOC100131668 pseudo - - - - 20121209 -9606 100131669 LOC100131669 - - - 18 18q12.3 uncharacterized LOC100131669 unknown - - - - 20120511 -9606 100131671 SEC13P1 - - HGNC:44529 3 3p22.3 SEC13 homolog (S. cerevisiae) pseudogene 1 pseudo SEC13P1 SEC13 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100131672 RPL21P87 - RPL21_35_1007 HGNC:36411 9 9q31.3 ribosomal protein L21 pseudogene 87 pseudo RPL21P87 ribosomal protein L21 pseudogene 87 O - 20121230 -9606 100131676 LOC100131676 - - - 12 12p13.31 clathrin, light chain A pseudogene pseudo - - - - 20121230 -9606 100131678 LOC100131678 - - - 5 5p14.1 cyclin B3 pseudogene pseudo - - - - 20121230 -9606 100131680 LOC100131680 - - - 6 6q14.1 52 kDa repressor of the inhibitor of the protein kinase-like pseudo - - - - 20121230 -9606 100131685 LOC100131685 - - - 3 3q28 enabled homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100131688 VN1R68P - - HGNC:37389 16 16p11.2 vomeronasal 1 receptor 68 pseudogene pseudo VN1R68P vomeronasal 1 receptor 68 pseudogene O - 20121230 -9606 100131689 LOC100131689 - - - 14 14q22.1 pumilio domain-containing protein KIAA0020-like pseudo - - - - 20121230 -9606 100131691 LOC100131691 - - - 19 19q13.43 uncharacterized LOC100131691 miscRNA - - - - 20121230 -9606 100131693 EIF4EP2 - - HGNC:32428 17 17q21.33 eukaryotic translation initiation factor 4E pseudogene 2 pseudo EIF4EP2 eukaryotic translation initiation factor 4E pseudogene 2 O - 20121230 -9606 100131695 RNF11P1 - - HGNC:33988 2 2q32.2 ring finger protein 11 pseudogene 1 pseudo RNF11P1 ring finger protein 11 pseudogene 1 O - 20121230 -9606 100131702 LOC100131702 - - - 22 22q11.23 uncharacterized LOC100131702 unknown - - - - 20120511 -9606 100131711 RFC3P1 - - HGNC:44531 3 3p22.3 replication factor C (activator 1) 3, 38kDa pseudogene 1 pseudo RFC3P1 replication factor C (activator 1) 3, 38kDa pseudogene 1 O - 20121230 -9606 100131713 RPL29P11 - RPL29_2_362 HGNC:36905 3 3p22.2 ribosomal protein L29 pseudogene 11 pseudo RPL29P11 ribosomal protein L29 pseudogene 11 O - 20121230 -9606 100131719 LOC100131719 - - - 10 10q26.13 uncharacterized LOC100131719 protein-coding - - - - 20120511 -9606 100131725 LOC100131725 - - - 1 1q42.3 solute carrier family 39 (zinc transporter), member 14 pseudogene pseudo - - - - 20121230 -9606 100131726 LOC100131726 - HCCC11|HCCC11_v1|HCCC11_v2 - 8 8q24.13 HCC-related HCC-C11_v3 miscRNA - - - - 20121230 -9606 100131730 RPL37AP7 - RPL37A_4_1128 HGNC:35888 11 11p14.1 ribosomal protein L37a pseudogene 7 pseudo RPL37AP7 ribosomal protein L37a pseudogene 7 O - 20121230 -9606 100131733 USP30-AS1 - - HGNC:40909 12 12q24.11 USP30 antisense RNA 1 miscRNA USP30-AS1 USP30 antisense RNA 1 O - 20121230 -9606 100131736 LOC100131736 - - - 2 2q24.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo - - - - 20121230 -9606 100131740 CIR1P1 - - HGNC:44011 5 5q33.2 corepressor interacting with RBPJ, 1 pseudogene 1 pseudo CIR1P1 corepressor interacting with RBPJ, 1 pseudogene 1 O - 20121230 -9606 100131742 LOC100131742 - - - 1 1p36.32 uncharacterized LOC100131742 unknown - - - - 20120710 -9606 100131743 GAPDHP40 - - HGNC:37797 5 5q33.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 40 pseudo GAPDHP40 glyceraldehyde 3 phosphate dehydrogenase pseudogene 40 O - 20121230 -9606 100131747 LOC100131747 - - - 1 1q32.1 small EDRK-rich factor 2 pseudogene pseudo - - - - 20121230 -9606 100131755 ARMCX4 LL0XNC01-209G1.1 CXorf35 HGNC:28615|Ensembl:ENSG00000196440|Vega:OTTHUMG00000022030 X Xq22.1 armadillo repeat containing, X-linked 4 protein-coding ARMCX4 armadillo repeat containing, X-linked 4 O armadillo repeat containing, X-linked 4 pseudogene|armadillo repeat-containing X-linked protein 4 20121230 -9606 100131756 LOC100131756 - - - 1 1p34.2 uncharacterized LOC100131756 unknown - - - - 20120508 -9606 100131759 RPL19P3 - RPL19_1_59 HGNC:36671 1 1p31.3 ribosomal protein L19 pseudogene 3 pseudo RPL19P3 ribosomal protein L19 pseudogene 3 O - 20121230 -9606 100131760 LOC100131760 - - - 9 9q13 glucoside xylosyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100131761 RPS12P12 - RPS12_5_662 HGNC:36235 6 6p22.3 ribosomal protein S12 pseudogene 12 pseudo RPS12P12 ribosomal protein S12 pseudogene 12 O - 20121230 -9606 100131763 LOC100131763 - - - 2 2q37.3 uncharacterized LOC100131763 unknown - - - - 20120511 -9606 100131766 OK/SW-CL.58 - - - 13 13q12.3 OK/SW-CL.58 unknown - - - - 20120710 -9606 100131768 LOC100131768 - - - 6 6q23.1 uncharacterized LOC100131768 unknown - - - - 20120511 -9606 100131770 LOC100131770 - - - 8 8q13.1 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene pseudo - - - - 20121230 -9606 100131775 PSMA2P2 - - HGNC:43833 8 8q22.1 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 2 pseudo PSMA2P2 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 2 O - 20121230 -9606 100131777 DPPA2P4 - - HGNC:44629 16 16q13 developmental pluripotency associated 2 pseudogene 4 pseudo DPPA2P4 developmental pluripotency associated 2 pseudogene 4 O - 20121230 -9606 100131779 LOC100131779 - - - 12 12q24.31 translocase of outer mitochondrial membrane 6 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100131784 ARL2BPP8 - - HGNC:39452 17 17q22 ADP-ribosylation factor-like 2 binding protein pseudogene 8 pseudo ARL2BPP8 ADP-ribosylation factor-like 2 binding protein pseudogene 8 O - 20121230 -9606 100131785 LOC100131785 - - - 7 7q22.3 ring finger protein 181 pseudogene pseudo - - - - 20121230 -9606 100131787 RPS27P7 - RPS27_3_126 HGNC:35622 1 1q25.1 ribosomal protein S27 pseudogene 7 pseudo RPS27P7 ribosomal protein S27 pseudogene 7 O - 20121230 -9606 100131788 RPL26P29 RP11-9E13.4 RPL26_14_1054 HGNC:36135 10 10q21.3 ribosomal protein L26 pseudogene 29 pseudo RPL26P29 ribosomal protein L26 pseudogene 29 O - 20121230 -9606 100131789 VN1R46P - - HGNC:37366 8 8p11.21 vomeronasal 1 receptor 46 pseudogene pseudo VN1R46P vomeronasal 1 receptor 46 pseudogene O - 20121230 -9606 100131792 LOC100131792 - - - 5 5q23.2 uncharacterized LOC100131792 unknown - - - - 20120511 -9606 100131795 LOC100131795 - - - 15 15q21.3 uncharacterized LOC100131795 unknown - - - - 20120511 -9606 100131796 LOC100131796 - - - 15 15q22.33 LP2570 unknown - - - - 20120710 -9606 100131797 RPL15P19 - - - 15 15q21.1 ribosomal protein L15 pseudogene pseudo - - - - 20121230 -9606 100131800 UBE2D3P4 RP11-163N15.1 - HGNC:39391 13 13q31.1 ubiquitin-conjugating enzyme E2D 3 pseudogene 4 pseudo UBE2D3P4 ubiquitin-conjugating enzyme E2D 3 pseudogene 4 O - 20121230 -9606 100131801 PET100 - C19orf79 HGNC:40038|MIM:614770|Ensembl:ENSG00000229833 19 19p13.2 PET100 homolog (S. cerevisiae) protein-coding PET100 PET100 homolog (S. cerevisiae) O protein PET100 homolog, mitochondrial 20121230 -9606 100131802 LOC100131802 - - - 22 22q12.3 uncharacterized LOC100131802 unknown - - - - 20121230 -9606 100131805 RPL6P18 - RPL6_13_667 HGNC:36911 6 6p22.3 ribosomal protein L6 pseudogene 18 pseudo RPL6P18 ribosomal protein L6 pseudogene 18 O - 20121230 -9606 100131809 LOC100131809 - - - Un - cell division cycle protein 27 homolog pseudo - - - - 20121102 -9606 100131810 ADH5P3 - - HGNC:22991 1 1q43 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 3 pseudo ADH5P3 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 3 O - 20121230 -9606 100131814 LINC00271 - C6orf217|NCRNA00271 HGNC:32526 6 6q23.3 long intergenic non-protein coding RNA 271 miscRNA LINC00271 long intergenic non-protein coding RNA 271 O - 20121230 -9606 100131815 LOC100131815 - - - X Xp11.23 uncharacterized LOC100131815 pseudo - - - - 20121209 -9606 100131816 UBE2DNL - - HGNC:28656 X Xq21.1 ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene) pseudo UBE2DNL ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene) O - 20121230 -9606 100131820 LOC100131820 - - - 11 11p15.4 uncharacterized LOC100131820 protein-coding - - - - 20120511 -9606 100131821 LOC100131821 - - - 17 17q21.2 uncharacterized LOC100131821 protein-coding - - - - 20120511 -9606 100131822 LOC100131822 - - - 17 17q12 uncharacterized LOC100131822 protein-coding - - - - 20120511 -9606 100131823 SUMO2P7 - - HGNC:39017 17 17q21.33 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 7 pseudo SUMO2P7 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 7 O - 20121230 -9606 100131825 LOC100131825 - - - 1 1q23.2 uncharacterized LOC100131825 miscRNA - - - - 20121230 -9606 100131826 LOC100131826 UNQ3028 - - 4 4q21.1 TSSP3028 unknown - - - - 20121230 -9606 100131827 ZNF717 - X17|ZNF838 HGNC:29448|Ensembl:ENSG00000227124|Vega:OTTHUMG00000158965 3 3p12.3 zinc finger protein 717 protein-coding ZNF717 zinc finger protein 717 O krueppel-like factor X17|kruppel-like zinc finger factor X17|zinc finger protein 838 20121230 -9606 100131828 CIR1P2 - - HGNC:44012 4 4q26 corepressor interacting with RBPJ, 1 pseudogene 2 pseudo CIR1P2 corepressor interacting with RBPJ, 1 pseudogene 2 O - 20121230 -9606 100131829 LOC100131829 - - - 4 4q23 uncharacterized LOC100131829 protein-coding - - - - 20120511 -9606 100131831 LOC100131831 - - - 19 19p13.13 uncharacterized LOC100131831 unknown - - - - 20120420 -9606 100131832 LOC100131832 - - - 2 2q14.3 ZFP91 zinc finger protein pseudogene pseudo - - - - 20121230 -9606 100131840 LOC100131840 - - - 3 3p21.31 uncharacterized LOC100131840 protein-coding - - - - 20120511 -9606 100131842 LOC100131842 - - - 11 11q14.2 heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudogene pseudo - - - - 20121230 -9606 100131846 RPL23AP83 - RPL23A_38_1781 HGNC:35846 X Xp11.21 ribosomal protein L23a pseudogene 83 pseudo RPL23AP83 ribosomal protein L23a pseudogene 83 O - 20121230 -9606 100131849 LOC100131849 - - - 8 8q22.2 coiled-coil domain containing 53 pseudogene pseudo - - - - 20121230 -9606 100131852 LOC100131852 - - - 2 2p16.3 coiled-coil domain containing 12 pseudogene pseudo - - - - 20121230 -9606 100131855 LOC100131855 - - - 9 9p21.1 chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121230 -9606 100131859 LOC100131859 tcag7.1306 - - 7 7q22.1 SAP domain containing ribonucleoprotein pseudogene pseudo - - - - 20121230 -9606 100131860 LOC100131860 - - - 15 15q25.2 uncharacterized LOC100131860 protein-coding - - - - 20120511 -9606 100131863 RPS18P5 RP5-1033B10.18-010 RPS18|RPS18_1_389 HGNC:36287 3 3q12.3 ribosomal protein S18 pseudogene 5 pseudo RPS18P5 ribosomal protein S18 pseudogene 5 O - 20121230 -9606 100131864 LOC100131864 - - - 1 1p36.31 uncharacterized LOC100131864 protein-coding - - - - 20120511 -9606 100131866 RPS2P9 - RPS2_5_144 HGNC:36704 1 1q32.1 ribosomal protein S2 pseudogene 9 pseudo RPS2P9 ribosomal protein S2 pseudogene 9 O - 20121230 -9606 100131868 LOC100131868 - - - 3 3q29 serine/threonine-protein phosphatase 4 regulatory subunit 2-like pseudo - - - - 20121230 -9606 100131874 CFL1P3 - CFLL3|CFLP3 HGNC:1879 1 1p31.3 cofilin 1 (non-muscle) pseudogene 3 pseudo CFL1P3 cofilin 1 (non-muscle) pseudogene 3 O - 20121230 -9606 100131877 LOC100131877 - - - 9 9q32 small EDRK-rich factor 2 pseudogene pseudo - - - - 20121230 -9606 100131878 LOC100131878 - - - 14 14q32.11 uncharacterized LOC100131878 protein-coding - - - - 20120511 -9606 100131879 ZYG11AP1 - - HGNC:38032 9 9q31.1 zyg-11 family member A, cell cycle regulator pseudogene 1 pseudo ZYG11AP1 zyg-11 family member A, cell cycle regulator pseudogene 1 O - 20121230 -9606 100131881 EI24P3 - - HGNC:44588 3 3p21.31 etoposide induced 2.4 pseudogene 3 pseudo EI24P3 etoposide induced 2.4 pseudogene 3 O - 20121230 -9606 100131884 LOC100131884 - - - 4 4q26 capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100131890 LOC100131890 - - - 6 6q13 neugrin, neurite outgrowth associated pseudogene pseudo - - - - 20121230 -9606 100131893 RPL3P11 - RPL3_7_963 HGNC:35521 9 9p23 ribosomal protein L3 pseudogene 11 pseudo RPL3P11 ribosomal protein L3 pseudogene 11 O - 20121230 -9606 100131894 LOC100131894 - - - 12 12q24.33 uncharacterized LOC100131894 protein-coding - - - - 20120511 -9606 100131897 FAM196B - C5orf57 HGNC:37271|Ensembl:ENSG00000204767|Vega:OTTHUMG00000163083 5 5q35.1 family with sequence similarity 196, member B protein-coding FAM196B family with sequence similarity 196, member B O protein FAM196B 20121230 -9606 100131899 E2F4P1 - - HGNC:38684 6 6p21.2 E2F transcription factor 4, p107/p130-binding pseudogene 1 pseudo E2F4P1 E2F transcription factor 4, p107/p130-binding pseudogene 1 O - 20121230 -9606 100131901 LOC100131901 - - - 3 3p12.3 putative uncharacterized protein UNQ6125/PRO20090-like pseudo - - - - 20121209 -9606 100131902 KRTAP25-1 - KAP25.1 HGNC:34003|Ensembl:ENSG00000232263|Vega:OTTHUMG00000125482 21 21q22.11 keratin associated protein 25-1 protein-coding KRTAP25-1 keratin associated protein 25-1 O keratin-associated protein 25-1 20121230 -9606 100131905 RPS27P21 - RPS27_9_1229 HGNC:35826 12 12q12 ribosomal protein S27 pseudogene 21 pseudo RPS27P21 ribosomal protein S27 pseudogene 21 O - 20121230 -9606 100131907 LOC100131907 - - - 19 19p13.3 uncharacterized LOC100131907 protein-coding - - - - 20120511 -9606 100131910 LOC100131910 - - - 8 8q24.3 uncharacterized LOC100131910 unknown - - - - 20121230 -9606 100131913 RPL5P20 - RPL5_9_664 HGNC:36660 6 6p22.3 ribosomal protein L5 pseudogene 20 pseudo RPL5P20 ribosomal protein L5 pseudogene 20 O - 20121230 -9606 100131918 LOC100131918 - - - 1 1q42.13 KIAA1191 pseudogene pseudo - - - - 20121230 -9606 100131920 LOC100131920 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100131921 SERF1AP1 - - HGNC:44061 4 4q28.3 small EDRK-rich factor 1A (telomeric) pseudogene 1 pseudo SERF1AP1 small EDRK-rich factor 1A (telomeric) pseudogene 1 O - 20121230 -9606 100131924 LOC100131924 - - - X Xq11.2 biogenesis of lysosomal organelles complex-1, subunit 2 pseudogene pseudo - - - - 20121230 -9606 100131929 LOC100131929 - - - 7 7q22.2 uncharacterized LOC100131929 unknown - - - - 20120622 -9606 100131932 RCC2P3 - - HGNC:42379 7 7q33 regulator of chromosome condensation 2 pseudogene 3 pseudo RCC2P3 regulator of chromosome condensation 2 pseudogene 3 O - 20121230 -9606 100131934 LETM1P2 - - HGNC:33985 19 19q13.43 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 2 pseudo LETM1P2 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 2 O - 20121230 -9606 100131935 GAPDHP41 RP11-343D24.1 - HGNC:37798 6 6p11.2 glyceraldehyde 3 phosphate dehydrogenase pseudogene 41 pseudo GAPDHP41 glyceraldehyde 3 phosphate dehydrogenase pseudogene 41 O - 20121230 -9606 100131938 LOC100131938 - - - 1 1q23.3 uncharacterized LOC100131938 unknown - - - - 20120511 -9606 100131939 LOC100131939 - - - 1 1q31.1 PARK2 co-regulated-like pseudogene pseudo - - - - 20121230 -9606 100131940 SNX5P1 - - HGNC:41512 4 4q21.1 sorting nexin 5 pseudogene 1 pseudo SNX5P1 sorting nexin 5 pseudogene 1 O - 20121230 -9606 100131943 LOC100131943 UNQ1944 - - 17 17p11.2 uncharacterized LOC100131943 unknown - - - - 20121230 -9606 100131945 RPL35AP13 - RPL35A_5_575 HGNC:35916 5 5q13.2 ribosomal protein L35a pseudogene 13 pseudo RPL35AP13 ribosomal protein L35a pseudogene 13 O - 20121230 -9606 100131947 PRPF38AP2 - - HGNC:44693 10 10p12.33 PRP38 domain containing A pseudogene 2 pseudo PRPF38AP2 PRP38 domain containing A pseudogene 2 O - 20121230 -9606 100131950 LOC100131950 - - - 14 14q24.3 methyltransferase like 5 pseudogene pseudo - - - - 20121230 -9606 100131953 LOC100131953 - - - 2 2p16.1 actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 100131956 RPS3P5 - RPS3_2_726 HGNC:36869 6 6q16.2 ribosomal protein S3 pseudogene 5 pseudo RPS3P5 ribosomal protein S3 pseudogene 5 O - 20121230 -9606 100131958 RPL15P12 - RPL15_6_949 HGNC:35529 8 8q24.21 ribosomal protein L15 pseudogene 12 pseudo RPL15P12 ribosomal protein L15 pseudogene 12 O - 20121230 -9606 100131961 ST13P19 - - HGNC:38862 1 1q32.2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 19 pseudo ST13P19 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 19 O - 20121230 -9606 100131962 LOC100131962 - - - 1 1q21.2 ubiquitin-conjugating enzyme E2D 4 (putative) pseudogene pseudo - - - - 20121230 -9606 100131964 RPL7L1P3 - - HGNC:39485 7 7q11.23 ribosomal protein L7-like 1 pseudogene 3 pseudo RPL7L1P3 ribosomal protein L7-like 1 pseudogene 3 O - 20121230 -9606 100131971 RPS26P54 - RPS26_21_1607 HGNC:36868 18 18q21.32 ribosomal protein S26 pseudogene 54 pseudo RPS26P54 ribosomal protein S26 pseudogene 54 O - 20121230 -9606 100131977 LOC100131977 - - - 3 3q27.1 prickle homolog 1 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100131980 ZNF705G - - HGNC:37134|Ensembl:ENSG00000215372|Vega:OTTHUMG00000165384 8 8p23.1 zinc finger protein 705G protein-coding ZNF705G zinc finger protein 705G O putative zinc finger protein 705G 20121230 -9606 100131981 UBE2V1P9 - - HGNC:44894 X Xq21.31 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 9 pseudo UBE2V1P9 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 9 O - 20121230 -9606 100131983 HNRNPA1P25 - - HGNC:39543 X Xq13.2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 25 pseudo HNRNPA1P25 heterogeneous nuclear ribonucleoprotein A1 pseudogene 25 O - 20121230 -9606 100131984 ANKRD57P1 - - HGNC:37984 Y Yq11.1 ankyrin repeat domain 57 pseudogene 1 pseudo ANKRD57P1 ankyrin repeat domain 57 pseudogene 1 O - 20121209 -9606 100131990 LOC100131990 - - - 2 2q24.3 uncharacterized LOC100131990 unknown - - - - 20120508 -9606 100131991 RPL29P8 - RPL29_1_300 HGNC:37026 2 2q31.1 ribosomal protein L29 pseudogene 8 pseudo RPL29P8 ribosomal protein L29 pseudogene 8 O - 20121230 -9606 100131992 TSSK5P2 - - HGNC:30274 8 8q24.3 testis-specific serine kinase 5 pseudogene 2 pseudo TSSK5P2 testis-specific serine kinase 5 pseudogene 2 O - 20121230 -9606 100131995 UQCRHP3 - - HGNC:38046 10 10q11.21 ubiquinol-cytochrome c reductase hinge protein pseudogene 3 pseudo UQCRHP3 ubiquinol-cytochrome c reductase hinge protein pseudogene 3 O - 20121230 -9606 100131997 FAM27E3 - - HGNC:28655|Ensembl:ENSG00000232833|Vega:OTTHUMG00000067317 9 9q13 family with sequence similarity 27, member E3 protein-coding FAM27E3 family with sequence similarity 27, member E3 O - 20121230 -9606 100131998 RRN3P3 - - HGNC:37620 16 16p12.2 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3 pseudo RRN3P3 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3 O - 20121230 -9606 100132004 LOC100132004 - - - 9 9q13 uncharacterized LOC100132004 miscRNA - - - - 20121209 -9606 100132005 LOC100132005 - - - 6 6p21.2 uncharacterized LOC100132005 unknown - - - - 20120511 -9606 100132006 LOC100132006 - - - 16 16p13.2 uncharacterized LOC100132006 protein-coding - - - - 20120508 -9606 100132009 LOC100132009 - - - 19 19q13.43 pentatricopeptide repeat domain 3 pseudogene pseudo - - - - 20121230 -9606 100132014 LOC100132014 - - - 5 5q23.1 uncharacterized LOC100132014 unknown - - - - 20120511 -9606 100132015 LOC100132015 - - - X Xq25 testis expressed sequence 13-like pseudogene pseudo - - - - 20121230 -9606 100132021 LOC100132021 - - - 11 11p15.4 uncharacterized LOC100132021 pseudo - - - - 20121209 -9606 100132025 LOC100132025 - - - 15 15q11.2 transmembrane domain-containing protein ENSP00000320207-like protein-coding - - - Putative transmembrane domain-containing protein ENSP00000320207 20120610 -9606 100132027 LOC100132027 - - - 17 17q24.1 putative protein FAM215A-like pseudo - - - - 20121209 -9606 100132031 DNM1P28 - DNM1DN3-1|DNM1DN3-3|DNM1DN3.1|DNM1DN3.3|DNM1DN3@ HGNC:35175 15 15q13.2 DNM1 pseudogene 28 pseudo DNM1P28 DNM1 pseudogene 28 O - 20121230 -9606 100132036 LOC100132036 - - - 5 5q11.2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene pseudo - - - - 20121230 -9606 100132037 RPS29P10 - RPS29_1_224 HGNC:37006 2 2p15 ribosomal protein S29 pseudogene 10 pseudo RPS29P10 ribosomal protein S29 pseudogene 10 O - 20121230 -9606 100132039 LOC100132039 - - - 5 5q13.3 spermine synthase pseudogene pseudo - - - - 20121230 -9606 100132043 LOC100132043 - - - 20 20q13.33 uncharacterized LOC100132043 pseudo - - - - 20121209 -9606 100132046 LOC100132046 - - - 8 8p23.1 uncharacterized LOC100132046 pseudo - - - - 20121209 -9606 100132047 RPL22P6 - RPL22_1_94 HGNC:36473 1 1p11.2 ribosomal protein L22 pseudogene 6 pseudo RPL22P6 ribosomal protein L22 pseudogene 6 O - 20121230 -9606 100132049 RPS19P4 - RPS19_2_563 HGNC:35778 5 5q11.2 ribosomal protein S19 pseudogene 4 pseudo RPS19P4 ribosomal protein S19 pseudogene 4 O - 20121230 -9606 100132053 RPL30P8 - RPL30_4_741 HGNC:36058 6 6q21 ribosomal protein L30 pseudogene 8 pseudo RPL30P8 ribosomal protein L30 pseudogene 8 O - 20121230 -9606 100132055 FAM157C - - HGNC:34081 9 - family with sequence similarity 157, member C miscRNA FAM157C family with sequence similarity 157, member C O - 20121230 -9606 100132056 LOC100132056 - - - 6 6q11.1 dihydrofolate reductase pseudogene pseudo - - - - 20121230 -9606 100132057 LOC100132057 - - - 1 1q21.2 phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 100132058 LOC100132058 - - - 3 3q27.3 G protein pathway suppressor 2 pseudogene pseudo - - - - 20121230 -9606 100132061 RPL9P14 - RPL9_3_318 HGNC:36816 2 2q33.3 ribosomal protein L9 pseudogene 14 pseudo RPL9P14 ribosomal protein L9 pseudogene 14 O - 20121230 -9606 100132062 LOC100132062 - - - 5 5q35.3 uncharacterized LOC100132062 miscRNA - - - - 20121209 -9606 100132066 ALG1L3P - - HGNC:44372 4 4p16.1 asparagine-linked glycosylation 1-like 3, pseudogene pseudo ALG1L3P asparagine-linked glycosylation 1-like 3, pseudogene O - 20121230 -9606 100132069 LOC100132069 - - - 3 3p21.1 uncharacterized LOC100132069 protein-coding - - - - 20120511 -9606 100132070 LOC100132070 - - - 1 1p36.13 UPF0627 protein ENSP00000358171-like pseudogene pseudo - - - - 20121230 -9606 100132071 LOC100132071 - - - 16 16p13.13 uncharacterized LOC100132071 protein-coding - - - - 20120511 -9606 100132073 LOC100132073 - - - 7 7p21.3 cyclin B2 pseudogene pseudo - - - - 20121230 -9606 100132074 FOXO6 - - HGNC:24814|MIM:611457 1 1p34.2 forkhead box O6 protein-coding FOXO6 forkhead box O6 O forkhead box protein O6 20121230 -9606 100132076 LOC100132076 - - - X Xp21.3 radixin pseudogene pseudo - - - - 20121230 -9606 100132077 LOC100132077 - - - 9 9q22.32 uncharacterized LOC100132077 miscRNA - - - - 20121230 -9606 100132078 LOC100132078 - - - 11 11q23.1 uncharacterized LOC100132078 miscRNA - - - - 20121230 -9606 100132079 KARSP3 - - HGNC:39209 16 16q22.1 lysyl-tRNA synthetase pseudogene 3 pseudo KARSP3 lysyl-tRNA synthetase pseudogene 3 O - 20121230 -9606 100132081 LOC100132081 - - - 19 19q11 ladinin 1 pseudogene pseudo - - - - 20121230 -9606 100132086 LOC100132086 - - - 12 12p11.1 adenylate kinase isoenzyme 6-like pseudo - - - - 20121209 -9606 100132090 LOC100132090 - - - 4 4q35.1 survival of motor neuron 1, telomeric pseudogene pseudo - - - - 20121230 -9606 100132093 LOC100132093 - - - 1 1p36.33 uncharacterized LOC100132093 unknown - - - - 20121017 -9606 100132099 LOC100132099 UNQ1829 - - 13 13q32.3 FRSS1829 unknown - - - - 20120710 -9606 100132100 DNM1P32 - DNM1DN4-5|DNM1DN4.5|DNM1DN4@ HGNC:35179 15 15q13.3 DNM1 pseudogene 32 pseudo DNM1P32 DNM1 pseudogene 32 O - 20121230 -9606 100132101 HERC2P7 - - HGNC:4875 15 15q11.2 hect domain and RLD 2 pseudogene 7 pseudo HERC2P7 hect domain and RLD 2 pseudogene 7 O - 20121230 -9606 100132103 FAM66E - - HGNC:18735 8 8p23.1 family with sequence similarity 66, member E miscRNA FAM66E family with sequence similarity 66, member E O - 20121230 -9606 100132104 AK4P2 - - HGNC:39066 5 5q11.2 adenylate kinase 4 pseudogene 2 pseudo AK4P2 adenylate kinase 4 pseudogene 2 O - 20121230 -9606 100132108 LOC100132108 - - - 1 1q22 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 pseudogene pseudo - - - - 20121230 -9606 100132111 LOC100132111 - - - 1 1q21.3 uncharacterized LOC100132111 miscRNA - - - - 20121230 -9606 100132115 RBM22P11 - - HGNC:39704 X Xp11.22 RNA binding motif protein 22 pseudogene 11 pseudo RBM22P11 RNA binding motif protein 22 pseudogene 11 O - 20121230 -9606 100132116 LOC100132116 - - - 10 10q23.31 uncharacterized LOC100132116 unknown - - - - 20121230 -9606 100132121 ETF1P3 - SUP45L4 HGNC:3480 X Xq12 eukaryotic translation termination factor 1 pseudogene 3 pseudo ETF1P3 eukaryotic translation termination factor 1 pseudogene 3 O - 20121230 -9606 100132122 RPL35AP5 - RPL35A_2_150 HGNC:35570 1 1q32.1 ribosomal protein L35a pseudogene 5 pseudo RPL35AP5 ribosomal protein L35a pseudogene 5 O - 20121230 -9606 100132124 TSPY17P - - HGNC:37713 Y Yp11.2 testis specific protein, Y-linked 17, pseudogene pseudo TSPY17P testis specific protein, Y-linked 17, pseudogene O - 20121209 -9606 100132126 LOC100132126 - - - 12 12q22 mitochondrial carrier 2 pseudogene pseudo - - - - 20121230 -9606 100132127 RPL39P14 - RPL39_6_311 HGNC:36609 2 2q33.1 ribosomal protein L39 pseudogene 14 pseudo RPL39P14 ribosomal protein L39 pseudogene 14 O - 20121230 -9606 100132132 DSTNP5 - - HGNC:44549 2 2q33.3 destrin (actin depolymerizing factor) pseudogene 5 pseudo DSTNP5 destrin (actin depolymerizing factor) pseudogene 5 O - 20121230 -9606 100132142 RPS3AP4 - - HGNC:23562 14 14q13.2 ribosomal protein S3A pseudogene 4 pseudo RPS3AP4 ribosomal protein S3A pseudogene 4 O - 20121230 -9606 100132146 LOC100132146 - - - 3 3p21.31 uncharacterized LOC100132146 protein-coding - - - uncharacterized protein LOC100132146 20121230 -9606 100132147 LOC100132147 - - - 1 1p36.13 uncharacterized LOC100132147 unknown - - - - 20120710 -9606 100132153 LOC100132153 - - - 6 6p25.2 tubulin, beta 2B pseudogene pseudo - - - - 20121230 -9606 100132154 LOC100132154 - - - 9 9q21.11 putative ankyrin repeat domain-containing protein 30B-like protein-coding - - - - 20121209 -9606 100132159 CALML3-AS1 - - HGNC:44682 10 10p15.1 CALML3 antisense RNA 1 miscRNA CALML3-AS1 CALML3 antisense RNA 1 O - 20121230 -9606 100132161 LOC100132161 - - - 9 9p11.2 ribosomal protein L7a pseudogene pseudo - - - - 20121230 -9606 100132163 PHKA2-AS1 - - HGNC:44110 X Xp22.13 PHKA2 antisense RNA 1 miscRNA PHKA2-AS1 PHKA2 antisense RNA 1 O - 20121230 -9606 100132166 IL9RP4 - - HGNC:6034 18 18p11.32 interleukin 9 receptor pseudogene 4 pseudo IL9RP4 interleukin 9 receptor pseudogene 4 O - 20121230 -9606 100132167 LOC100132167 - - - 9 9p12 uncharacterized LOC100132167 unknown - - - - 20121017 -9606 100132169 WASIR2 - NCRNA00286A HGNC:38609 16 16p13.3 WASH and IL9R antisense RNA 2 unknown WASIR2 WASH and IL9R antisense RNA 2 O - 20121021 -9606 100132172 LOC100132172 - - - 11 11q23.2 histone deacetylase 2 pseudogene pseudo - - - - 20121230 -9606 100132173 PPP1R26P3 - KIAA0649P3 HGNC:42017 22 22q11.21 protein phosphatase 1, regulatory subunit 26 pseudogene 3 pseudo PPP1R26P3 protein phosphatase 1, regulatory subunit 26 pseudogene 3 O - 20121230 -9606 100132174 LOC100132174 - - - 17 17q25.3 uncharacterized LOC100132174 protein-coding - - - - 20121230 -9606 100132179 LOC100132179 - - - 1 1q41 solute carrier family 35, member E3 pseudogene pseudo - - - - 20121230 -9606 100132183 FP6628 - - - 8 8q22.1 uncharacterized LOC100132183 unknown - - - - 20121230 -9606 100132188 LOC100132188 - - - 6 6q27 LP7097 unknown - - - - 20120710 -9606 100132195 TRIM60P13 - - HGNC:38485 13 13q31.2 tripartite motif containing 60 pseudogene 13 pseudo TRIM60P13 tripartite motif containing 60 pseudogene 13 O - 20121230 -9606 100132197 LOC100132197 - - - 17 17p11.2 uncharacterized LOC100132197 protein-coding - - - - 20120511 -9606 100132199 RPL36AP44 - RPL36A_21_1441 HGNC:36986 15 15q22.2 ribosomal protein L36a pseudogene 44 pseudo RPL36AP44 ribosomal protein L36a pseudogene 44 O - 20121230 -9606 100132201 ZSWIM5P2 - - HGNC:43769 17 17p11.2 zinc finger, SWIM-type containing 5 pseudogene 2 pseudo ZSWIM5P2 zinc finger, SWIM-type containing 5 pseudogene 2 O - 20121230 -9606 100132202 LOC100132202 - - - 15 15q13.1 golgin subfamily A member 6-like protein 1-like protein-coding - - - - 20121209 -9606 100132204 DNM1P29 - DNM1DN3-2|DNM1DN3.2|DNM1DN3@ HGNC:35176 15 15q13.2 DNM1 pseudogene 29 pseudo DNM1P29 DNM1 pseudogene 29 O - 20121230 -9606 100132207 LOC100132207 - - - 3 3q21.3 uncharacterized LOC100132207 unknown - - - - 20120511 -9606 100132215 LOC100132215 - - - 2 2p15 uncharacterized LOC100132215 miscRNA - - - - 20121230 -9606 100132217 LOC100132217 - - - 7 7q11.21 uncharacterized LOC100132217 unknown - - - - 20121017 -9606 100132222 RBM22P10 - - HGNC:39703 X Xp11.22 RNA binding motif protein 22 pseudogene 10 pseudo RBM22P10 RNA binding motif protein 22 pseudogene 10 O - 20121209 -9606 100132223 LOC100132223 - - - 3 3q26.33 actin, beta pseudogene pseudo - - - - 20121230 -9606 100132229 LOC100132229 - - - 8 8p21.2 nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100132230 FAM201C - - HGNC:37996 Y Yq11.1 family with sequence similarity 201, member C pseudo FAM201C family with sequence similarity 201, member C O - 20121209 -9606 100132234 LINC00543 - - HGNC:43678 13 13q12.2 long intergenic non-protein coding RNA 543 unknown LINC00543 long intergenic non-protein coding RNA 543 O uncharacterized protein LOC100132234 20121230 -9606 100132239 LOC100132239 - - - 6 6p22.3 calcium activated nucleotidase 1 pseudogene pseudo - - - - 20121230 -9606 100132240 LOC100132240 - - - 1 1p22.1 uncharacterized LOC100132240 pseudo - - - - 20121209 -9606 100132242 LOC100132242 - - - 6 6p21.1 exosome component 8 pseudogene pseudo - - - - 20121230 -9606 100132244 LOC100132244 - - - 7 7p22.3 uncharacterized LOC100132244 protein-coding - - - - 20120508 -9606 100132247 LOC100132247 - - Ensembl:ENSG00000243716|Vega:OTTHUMG00000163573 16 16p12.2 nuclear pore complex interacting protein related gene protein-coding - - - nuclear pore complex interacting protein family member 20121230 -9606 100132249 LOC100132249 - - - 9 9q13 uncharacterized LOC100132249 unknown - - - - 20121230 -9606 100132251 FAM108A10P - - HGNC:38510 16 16p11.2 family with sequence similarity 108, member A10, pseudogene pseudo FAM108A10P family with sequence similarity 108, member A10, pseudogene O - 20121230 -9606 100132253 LOC100132253 - - - 9 9p12 RAB28, member RAS oncogene family pseudogene pseudo - - - - 20121209 -9606 100132257 LOC100132257 - - - 14 14q11.2 Putative ankyrin repeat domain-containing protein ENSP00000383069 protein-coding - - - - 20121102 -9606 100132260 LOC100132260 - - - 3 3p24.3 chromodomain protein, Y-like pseudogene pseudo - - - - 20121230 -9606 100132261 LOC100132261 - - - 11 11q13.2 uncharacterized LOC100132261 pseudo - - - - 20121209 -9606 100132264 RNFT1P2 - - HGNC:44388 1 1p31.1 ring finger protein, transmembrane 1 pseudogene 2 pseudo RNFT1P2 ring finger protein, transmembrane 1 pseudogene 2 O - 20121230 -9606 100132265 RPL32P15 - RPL32_5_690 HGNC:36119 6 6p21.1 ribosomal protein L32 pseudogene 15 pseudo RPL32P15 ribosomal protein L32 pseudogene 15 O - 20121230 -9606 100132268 LOC100132268 - - - 9 9p11.2 FK506 binding protein 4, 59kDa pseudogene pseudo - - - - 20121209 -9606 100132272 LOC100132272 - - - 19 19q13.2 uncharacterized LOC100132272 unknown - - - - 20121230 -9606 100132273 LOC100132273 - - - 22 22q13.2 uncharacterized LOC100132273 miscRNA - - - - 20121230 -9606 100132280 LOC100132280 - - - 8 8q23.2 ataxin 3 pseudogene pseudo - - - - 20121230 -9606 100132285 KIR2DS2 CU464060.1 183ActI|CD158J|CD158b|NKAT5|cl-49 HGNC:6334|MIM:604953 19 19q13.4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2 protein-coding KIR2DS2 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2 O 1060P11.9.2|CD158 antigen-like family member J|MHC class I NK cell receptor|NK receptor 183 ActI|NKAT-5|killer cell immunoglobulin-like receptor 2DS2|killer-cell Ig-like receptor|killer-cell immunoglobulin-like receptor two domains short tail 2 protein|natural killer associated transcript 5|natural killer cell inhibitory receptor|natural killer-associated transcript 5|p58 KIR|p58 NK receptor CL-49|p58 killer cell inhibitory receptor KIR-K7a|p58 natural killer cell receptor clone CL-49 20121209 -9606 100132286 NDUFB8P3 - - HGNC:33979 11 11p13 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 3 pseudo NDUFB8P3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 3 O - 20121230 -9606 100132287 LOC100132287 - - - 1 1p36.33 uncharacterized LOC100132287 miscRNA - - - - 20121230 -9606 100132288 TEKT4P2 - MAFIPL|TEKT4P HGNC:40046 21 21p11.2 tektin 4 pseudogene 2 pseudo TEKT4P2 tektin 4 pseudogene 2 O - 20121230 -9606 100132289 ABCB10P4 - - HGNC:31130 15 15q13.1 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 4 pseudo ABCB10P4 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 4 O - 20121230 -9606 100132291 RPS27P29 - RPS27_17_1641 HGNC:36516 19 19p12 ribosomal protein S27 pseudogene 29 pseudo RPS27P29 ribosomal protein S27 pseudogene 29 O - 20121230 -9606 100132292 LOC100132292 - - - 15 15q11.2 uncharacterized LOC100132292 unknown - - - - 20120508 -9606 100132295 PPP1R26P4 - KIAA0649P4 HGNC:42018 22 22q11.21 protein phosphatase 1, regulatory subunit 26 pseudogene 4 pseudo PPP1R26P4 protein phosphatase 1, regulatory subunit 26 pseudogene 4 O - 20121209 -9606 100132304 LOC100132304 - - - X Xq13.2 uncharacterized LOC100132304 miscRNA - - - - 20121209 -9606 100132306 LOC100132306 - - - 1 1q21.2 family with sequence similarity 91, member A1 pseudogene pseudo - - - - 20121230 -9606 100132308 SLC29A4P2 - - HGNC:43782 7 7q11.21 solute carrier family 29 (nucleoside transporters), member 4 pseudogene 2 pseudo SLC29A4P2 solute carrier family 29 (nucleoside transporters), member 4 pseudogene 2 O - 20121230 -9606 100132310 FCF1P11 - - HGNC:44623 7 7q34 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 11 pseudo FCF1P11 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 11 O - 20121230 -9606 100132311 RPL38P3 - RPL38_2_479 HGNC:35980 4 4q12 ribosomal protein L38 pseudogene 3 pseudo RPL38P3 ribosomal protein L38 pseudogene 3 O - 20121230 -9606 100132319 LOC100132319 - - - 3 3q28 uncharacterized LOC100132319 unknown - - - - 20120710 -9606 100132321 NIPA2P1 - - HGNC:42041 7 7q21.13 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 1 pseudo NIPA2P1 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 1 O - 20121230 -9606 100132322 SAR1AP4 RP11-212D3.1 - HGNC:37638 X Xq13.3 SAR1 homolog A (S. cerevisiae) pseudogene 4 pseudo SAR1AP4 SAR1 homolog A (S. cerevisiae) pseudogene 4 O - 20121230 -9606 100132330 LOC100132330 - - - 2 2p11.2 mal, T-cell differentiation protein-like pseudogene pseudo - - - - 20121230 -9606 100132332 CNOT7P2 - - HGNC:44249 1 1p13.1 CCR4-NOT transcription complex, subunit 7 pseudogene 2 pseudo CNOT7P2 CCR4-NOT transcription complex, subunit 7 pseudogene 2 O - 20121230 -9606 100132336 LOC100132336 - - - 8 - GDNF family receptor alpha-2-like protein-coding - - - - 20121209 -9606 100132339 LOC100132339 - - - 16 16q12.2 uncharacterized LOC100132339 protein-coding - - - - 20121209 -9606 100132340 CYP4F59P - - HGNC:39947 9 9p12 cytochrome P450, family 4, subfamily F, polypeptide 59, pseudogene pseudo CYP4F59P cytochrome P450, family 4, subfamily F, polypeptide 59, pseudogene O - 20121209 -9606 100132341 CLUHP3 - C16orf67|KIAA0664L3|KIAA0664P3 HGNC:28447 16 16p11.2 clustered mitochondria (cluA/CLU1) homolog pseudogene 3 miscRNA CLUHP3 clustered mitochondria (cluA/CLU1) homolog pseudogene 3 O - 20121230 -9606 100132344 LOC100132344 - - - 16 16q24.1 uncharacterized LOC100132344 unknown - - - - 20120511 -9606 100132346 LOC100132346 - - - 16 16q23.1 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100132348 LOC100132348 - - - 9 9q21.33 uncharacterized LOC100132348 unknown - - - - 20120511 -9606 100132352 LOC100132352 - - - 9 9q12 FSHD region gene 1 pseudogene pseudo - - - - 20121230 -9606 100132354 LOC100132354 - - - 6 6p21.1 uncharacterized LOC100132354 miscRNA - - - - 20121230 -9606 100132355 SLC25A1P4 - - HGNC:43848 16 16p11.2 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 4 pseudo SLC25A1P4 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 4 O - 20121230 -9606 100132356 LOC100132356 hCG_2039148 - - 5 5p12 uncharacterized LOC100132356 miscRNA - - - - 20121230 -9606 100132358 EEF1A1P34 - - HGNC:37912 20 20p11.23 eukaryotic translation elongation factor 1 alpha 1 pseudogene 34 pseudo EEF1A1P34 eukaryotic translation elongation factor 1 alpha 1 pseudogene 34 O - 20121230 -9606 100132363 LOC100132363 - - - 16 16p13.3 uncharacterized LOC100132363 protein-coding - - - - 20120511 -9606 100132365 LOC100132365 - - - 14 14q24.3 uncharacterized LOC100132365 protein-coding - - - - 20120511 -9606 100132368 LOC100132368 - - - 12 12p13.1 uncharacterized LOC100132368 unknown - - - - 20120511 -9606 100132372 RPS10P28 - RPS10_14_1658 HGNC:35511 19 19q13.2 ribosomal protein S10 pseudogene 28 pseudo RPS10P28 ribosomal protein S10 pseudogene 28 O - 20121230 -9606 100132375 LOC100132375 - - - 2 2q11.2 uncharacterized LOC100132375 unknown - - - - 20120511 -9606 100132376 RPS29P8 - RPS29_5_283 HGNC:36915 2 2q23.1 ribosomal protein S29 pseudogene 8 pseudo RPS29P8 ribosomal protein S29 pseudogene 8 O - 20121230 -9606 100132380 AGGF1P1 - - HGNC:38051 4 4q35.2 angiogenic factor with G patch and FHA domains 1 pseudogene 1 pseudo AGGF1P1 angiogenic factor with G patch and FHA domains 1 pseudogene 1 O - 20121230 -9606 100132382 RPS14P4 - RPS14_2_264 HGNC:36419 2 2q13 ribosomal protein S14 pseudogene 4 pseudo RPS14P4 ribosomal protein S14 pseudogene 4 O - 20121230 -9606 100132386 KRTAP4-9 - KAP4.9 HGNC:18910|Ensembl:ENSG00000212722|Vega:OTTHUMG00000133584 17 17q21.2 keratin associated protein 4-9 protein-coding KRTAP4-9 keratin associated protein 4-9 O keratin-associated protein 4-9|keratin-associated protein 4.9|ultrahigh sulfur keratin-associated protein 4.9 20121230 -9606 100132396 ZNF705B - - HGNC:32284|Ensembl:ENSG00000215356|Vega:OTTHUMG00000165401 8 8p23.1 zinc finger protein 705B protein-coding ZNF705B zinc finger protein 705B O Putative zinc finger protein 705D-like protein LOC100132396 20121211 -9606 100132399 GAGE12D - GAGE-12B HGNC:31904|MIM:300728|Ensembl:ENSG00000227488|Vega:OTTHUMG00000024145 X Xp11.23 G antigen 12D protein-coding GAGE12D G antigen 12D O G antigen 12B/C/D/E|GAGE-12D|g antigen 12C/D/E 20121209 -9606 100132400 RPS15AP28 - RPS15A_16_1058 HGNC:36381 10 10q22.1 ribosomal protein S15a pseudogene 28 pseudo RPS15AP28 ribosomal protein S15a pseudogene 28 O - 20121230 -9606 100132402 LOC100132402 - - - 10 10q22.3 protein geranylgeranyltransferase type I, beta subunit pseudogene pseudo - - - - 20121230 -9606 100132403 FAM157B RP11-885N19.7 - HGNC:34080 9 9q34.3 family with sequence similarity 157, member B protein-coding FAM157B family with sequence similarity 157, member B O putative protein FAM157B 20121230 -9606 100132406 NBPF10 RP11-458D21.4 AB6|AG1|NBPF9 HGNC:31992|MIM:614000|Ensembl:ENSG00000163386 1 1q21.1 neuroblastoma breakpoint family, member 10 protein-coding NBPF10 neuroblastoma breakpoint family, member 10 O neuroblastoma breakpoint family member 10 20121230 -9606 100132407 RBM22P8 - - HGNC:39701 X Xp11.22 RNA binding motif protein 22 pseudogene 8 pseudo RBM22P8 RNA binding motif protein 22 pseudogene 8 O - 20121209 -9606 100132413 GKN3P - - HGNC:37701 2 2p13.3 gastrokine 3, pseudogene pseudo GKN3P gastrokine 3, pseudogene O - 20121230 -9606 100132415 SOCS5P4 - - HGNC:44600 X Xq13.1 suppressor of cytokine signaling 5 pseudogene 4 pseudo SOCS5P4 suppressor of cytokine signaling 5 pseudogene 4 O - 20121230 -9606 100132416 LOC100132416 - - - 9 - ATP synthase subunit alpha, mitochondrial-like pseudo - - - - 20121209 -9606 100132417 FCGR1C - CD64c|FCRIC|IGFR1|IGFRC HGNC:3615|MIM:601503 1 1q21.2 Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene pseudo FCGR1C Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene O - 20121230 -9606 100132418 LOC100132418 - - - 10 10q11.23 Uncharacterized PRO1102-like protein LOC100132418 protein-coding - - - - 20120511 -9606 100132420 ANKRD36P1 - - HGNC:37759 Y Yq11.23 ankyrin repeat domain 36 pseudogene 1 pseudo ANKRD36P1 ankyrin repeat domain 36 pseudogene 1 O - 20121230 -9606 100132421 DUX4L18 - DUXY2 HGNC:37716 Y Yq11.21 double homeobox 4 like 18 pseudo DUX4L18 double homeobox 4 like 18 O - 20121230 -9606 100132439 FAM27E4P - - HGNC:44415 9 9p11.2 family with sequence similarity 27, member E4, pseudogene protein-coding FAM27E4P family with sequence similarity 27, member E4, pseudogene O protein FAM27E3-like 20121209 -9606 100132441 LOC100132441 - - - 9 9p12 glucoside xylosyltransferase 1 pseudogene pseudo - - - - 20121209 -9606 100132443 LOC100132443 - - - 1 1p36.21 PRAME family member 17-like pseudo - - - - 20121230 -9606 100132450 LOC100132450 - - - 12 12p13.33 IQ motif and Sec7 domain 3 pseudogene pseudo - - - - 20121230 -9606 100132456 GUSBP7 - - HGNC:42321 5 5q21.1 glucuronidase, beta pseudogene 7 pseudo GUSBP7 glucuronidase, beta pseudogene 7 O - 20121230 -9606 100132463 CLDN24 - CLDN21 HGNC:37200|Ensembl:ENSG00000185758|Vega:OTTHUMG00000160628 4 4q35.1 claudin 24 protein-coding CLDN24 claudin 24 O claudin 21|putative claudin-24 20121230 -9606 100132464 FAM99B - - HGNC:32369 11 11p15.5 family with sequence similarity 99, member B (non-protein coding) miscRNA FAM99B family with sequence similarity 99, member B (non-protein coding) O - 20121230 -9606 100132467 RNF2P1 RP11-390F4.4 RNF2P HGNC:33987 9 9p24.1 ring finger protein 2 pseudogene 1 pseudo RNF2P1 ring finger protein 2 pseudogene 1 O - 20121230 -9606 100132474 LOC100132474 - - - 19 19p13.2 uncharacterized LOC100132474 protein-coding - - - - 20120511 -9606 100132476 KRTAP4-7 hCG_1818025 KAP4.7|KRTAP4.7 HGNC:18898|Ensembl:ENSG00000240871|Vega:OTTHUMG00000133582 17 17q21.2 keratin associated protein 4-7 protein-coding KRTAP4-7 keratin associated protein 4-7 O Ultrahigh sulfur keratin-associated protein 4.7|putative keratin-associated protein 4-X 20121230 -9606 100132479 RPL22P5 - RPL22_2_96 HGNC:37022 1 1q21.2 ribosomal protein L22 pseudogene 5 pseudo RPL22P5 ribosomal protein L22 pseudogene 5 O - 20121230 -9606 100132481 LOC100132481 - - - 3 3q21.3 uncharacterized LOC100132481 unknown - - - - 20121230 -9606 100132482 LOC100132482 - - - 1 1q21.1 uncharacterized LOC100132482 pseudo - - - - 20121209 -9606 100132487 LOC100132487 - - - 10 10q23.31 pentatricopeptide repeat domain 2 pseudogene pseudo - - - - 20121230 -9606 100132488 RPS27P6 - RPS27_2_83 HGNC:36163 1 1p13.3 ribosomal protein S27 pseudogene 6 pseudo RPS27P6 ribosomal protein S27 pseudogene 6 O - 20121230 -9606 100132495 LOC100132495 - - - 1 1q21.1 uncharacterized LOC100132495 protein-coding - - - - 20120511 -9606 100132496 RPS24P9 - RPS24_5_400 HGNC:35711 3 3q21.2 ribosomal protein S24 pseudogene 9 pseudo RPS24P9 ribosomal protein S24 pseudogene 9 O - 20121230 -9606 100132498 LOC100132498 - - - 2 2p11.2 centromere protein N pseudogene pseudo - - - - 20121230 -9606 100132499 RPS29P16 - RPS29_11_830 HGNC:35560 7 7q22.1 ribosomal protein S29 pseudogene 16 pseudo RPS29P16 ribosomal protein S29 pseudogene 16 O - 20121230 -9606 100132501 LOC100132501 - - - 18 18q21.2 uncharacterized LOC100132501 unknown - - - - 20121230 -9606 100132504 TSPY19P - - HGNC:37998 Y Yp11.2 testis specific protein, Y-linked 19, pseudogene pseudo TSPY19P testis specific protein, Y-linked 19, pseudogene O - 20121209 -9606 100132506 FAM197Y3 - - HGNC:37465 Y Yp11.2 family with sequence similarity 197, Y-linked, member 3 protein-coding FAM197Y3 family with sequence similarity 197, Y-linked, member 3 O - 20121209 -9606 100132507 LOC100132507 - - - 21 21p11.2 uncharacterized LOC100132507 pseudo - - - - 20121209 -9606 100132509 ZNF114P1 - - HGNC:23771 21 21q11.2 zinc finger protein 114 pseudogene 1 pseudo ZNF114P1 zinc finger protein 114 pseudogene 1 O - 20121230 -9606 100132510 GLRXP3 - GLRXL HGNC:34049 5 5q34 glutaredoxin (thioltransferase) pseudogene 3 pseudo GLRXP3 glutaredoxin (thioltransferase) pseudogene 3 O - 20121230 -9606 100132520 LOC100132520 - - - 11 11q23.2 mitochondrial translational release factor 1-like pseudogene pseudo - - - - 20121230 -9606 100132524 LOC100132524 - - - 5 5p13.2 UBX domain protein 2A pseudogene pseudo - - - - 20121230 -9606 100132526 FGD5P1 - - HGNC:44498 3 3p25.1 FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo FGD5P1 FYVE, RhoGEF and PH domain containing 5 pseudogene 1 O - 20121230 -9606 100132529 LOC100132529 - - - 16 16q22.2 uncharacterized LOC100132529 miscRNA - - - - 20121230 -9606 100132534 PDHA1P1 - - HGNC:44636 3 3p14.3 pyruvate dehydrogenase (lipoamide) alpha 1 pseudogene 1 pseudo PDHA1P1 pyruvate dehydrogenase (lipoamide) alpha 1 pseudogene 1 O - 20121230 -9606 100132537 DOCK11P1 - - HGNC:31719 14 14q21.2 dedicator of cytokinesis 11 pseudogene 1 pseudo DOCK11P1 dedicator of cytokinesis 11 pseudogene 1 O - 20121230 -9606 100132541 LOC100132541 - - - 9 9p12 glucoside xylosyltransferase 1 pseudogene pseudo - - - - 20121209 -9606 100132543 LOC100132543 - - - 12 12p11.21 family with sequence similarity 98, member B pseudogene pseudo - - - - 20121230 -9606 100132547 RPL26P33 - RPL26_16_1236 HGNC:36755 12 12q13.12 ribosomal protein L26 pseudogene 33 pseudo RPL26P33 ribosomal protein L26 pseudogene 33 O - 20121230 -9606 100132562 LOC100132562 - - - 11 11p11.2 yippee-like 5 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100132565 GOLGA8F - - HGNC:32378 15 15q13.1 golgin A8 family, member F pseudo GOLGA8F golgin A8 family, member F O - 20121230 -9606 100132570 LOC100132570 - - - 17 17q21.31 chromosome 17 open reading frame 58 pseudogene pseudo - - - - 20121230 -9606 100132571 LOC100132571 - - - 1 1q21.3 short coiled-coil protein pseudogene pseudo - - - - 20121230 -9606 100132580 RBMXP4 - - HGNC:34028 4 4q25 RNA binding motif protein, X-linked pseudogene 4 pseudo RBMXP4 RNA binding motif protein, X-linked pseudogene 4 O - 20121230 -9606 100132581 LOC100132581 - - - 7 7q11.23 putative speedy protein E8-like protein-coding - - - - 20121209 -9606 100132591 SERBP1P4 - - HGNC:44631 X Xq21.31 SERPINE1 mRNA binding protein 1 pseudogene 4 pseudo SERBP1P4 SERPINE1 mRNA binding protein 1 pseudogene 4 O - 20121230 -9606 100132593 LOC100132593 - - - 7 7q22.1 uncharacterized LOC100132593 unknown - - - - 20120511 -9606 100132594 PGAM1P5 - - HGNC:42452 12 12q22 phosphoglycerate mutase 1 pseudogene 5 pseudo PGAM1P5 phosphoglycerate mutase 1 pseudogene 5 O - 20121230 -9606 100132596 XGPY2 - XG|XGPY HGNC:34022 Y Yp11.31 Xg pseudogene, Y-linked 2 pseudo XGPY2 Xg pseudogene, Y-linked 2 O - 20121209 -9606 100132597 EIF3EP2 - - HGNC:37919 2 2q24.2 eukaryotic translation initiation factor 3, subunit E pseudogene 2 pseudo EIF3EP2 eukaryotic translation initiation factor 3, subunit E pseudogene 2 O - 20121230 -9606 100132598 ZNF965P - - HGNC:42025 13 13q11 zinc finger protein 965, pseudogene pseudo ZNF965P zinc finger protein 965, pseudogene O - 20121230 -9606 100132599 LOC100132599 - - - 9 9p12 zinc finger protein 114 pseudogene pseudo - - - - 20121209 -9606 100132601 GAPDHP68 - GAPDHL13|GAPDL13 HGNC:4146 7 7p21.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 pseudo GAPDHP68 glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 O - 20121230 -9606 100132605 LOC100132605 - - - 5 5p15.33 uncharacterized LOC100132605 unknown - - - - 20120710 -9606 100132606 LOC100132606 - - - 16 16p11.1 angiogenic factor with G patch and FHA domains 1 pseudogene pseudo - - - - 20121230 -9606 100132609 LOC100132609 - - - 9 9q32 programmed cell death 2 pseudogene pseudo - - - - 20121230 -9606 100132612 LOC100132612 - - - 14 14q32.2 uncharacterized LOC100132612 protein-coding - - - - 20121221 -9606 100132613 LOC100132613 - - - 4 4p16.1 uncharacterized LOC100132613 pseudo - - - - 20121209 -9606 100132615 LOC100132615 - - - 10 10q11.21 chromosome 12 open reading frame 49 pseudogene pseudo - - - - 20121230 -9606 100132617 SNX18P23 - - HGNC:39631 4 4p11 sorting nexin 18 pseudogene 23 pseudo SNX18P23 sorting nexin 18 pseudogene 23 O - 20121230 -9606 100132618 ZRANB2-AS1 - - HGNC:43594 1 1p31.1 ZRANB2 antisense RNA 1 miscRNA ZRANB2-AS1 ZRANB2 antisense RNA 1 O - 20121230 -9606 100132619 ATP5A1P10 - - HGNC:37668 9 9q13 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 10 pseudo ATP5A1P10 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 10 O - 20121230 -9606 100132621 LOC100132621 - - - 22 22q13.1 mitochondrial fission regulator 2 pseudogene pseudo - - - - 20121230 -9606 100132626 LOC100132626 - - - 1 1q41 family with sequence similarity 103, member A1 pseudogene pseudo - - - - 20121230 -9606 100132630 CICP3 - - HGNC:37742 1 1p36.33 capicua homolog (Drosophila) pseudogene 3 pseudo CICP3 capicua homolog (Drosophila) pseudogene 3 O - 20121227 -9606 100132641 BTF3P14 - - HGNC:38571 17 17p13.2 basic transcription factor 3 pseudogene 14 pseudo BTF3P14 basic transcription factor 3 pseudogene 14 O - 20121230 -9606 100132644 LOC100132644 - - - 15 15q22.2 ribosomal protein L7a pseudogene pseudo - - - - 20121230 -9606 100132645 RPL17P41 - RPL17_26_1572 HGNC:36292 17 17q24.2 ribosomal protein L17 pseudogene 41 pseudo RPL17P41 ribosomal protein L17 pseudogene 41 O - 20121230 -9606 100132647 LOC100132647 - - - 18 18q22.3 signal peptide peptidase like 3 pseudogene pseudo - - - - 20121230 -9606 100132651 LOC100132651 - - - 4 4q13.2 UBX domain protein 2A pseudogene pseudo - - - - 20121230 -9606 100132656 FKBP4P1 - - HGNC:44038 4 4q26 FK506 binding protein 4, 59kDa pseudogene 1 pseudo FKBP4P1 FK506 binding protein 4, 59kDa pseudogene 1 O - 20121230 -9606 100132658 LOC100132658 - - - X Xq22.1 NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100132659 LOC100132659 - - - 6 6q14.1 single-stranded DNA binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100132660 LOC100132660 - - - 9 - RAB28, member RAS oncogene family pseudogene pseudo - - - - 20121209 -9606 100132661 LOC100132661 - - - 3 3q24 PRO0419 unknown - - - - 20121006 -9606 100132669 LOC100132669 - - - 2 2q33.3 carboxymethylenebutenolidase homolog (Pseudomonas) pseudogene pseudo - - - - 20121230 -9606 100132672 LOC100132672 - - - 9 9q21.11 glucoside xylosyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100132673 RPS2P28 - RPS2_13_694 HGNC:35780 6 6p21.1 ribosomal protein S2 pseudogene 28 pseudo RPS2P28 ribosomal protein S2 pseudogene 28 O - 20121230 -9606 100132677 BSN-AS2 - - HGNC:42445 3 3p21.31 BSN antisense RNA 2 (head to head) miscRNA BSN-AS2 BSN antisense RNA 2 (head to head) O - 20121230 -9606 100132678 RPL7AP45 - RPL7A_15_979 HGNC:35935 9 9p11.2 ribosomal protein L7a pseudogene 45 pseudo RPL7AP45 ribosomal protein L7a pseudogene 45 O - 20121230 -9606 100132681 NFU1P1 - - HGNC:44553 3 3p22.1 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) pseudogene 1 pseudo NFU1P1 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100132683 PDCL3P3 - - HGNC:44504 3 3p24.3 phosducin-like 3 pseudogene 3 pseudo PDCL3P3 phosducin-like 3 pseudogene 3 O - 20121230 -9606 100132686 LOC100132686 - - - 11 11q23.1 uncharacterized LOC100132686 unknown - - - - 20120710 -9606 100132698 LOC100132698 - - - 14 14q11.2 single stranded DNA binding protein 4 pseudogene pseudo - - - - 20121230 -9606 100132699 NFU1P2 - - HGNC:44554 1 1p21.3 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) pseudogene 2 pseudo NFU1P2 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100132705 LOC100132705 - - - 22 22q11.21 immunoglobulin superfamily member 3-like protein-coding - - - - 20121209 -9606 100132707 LOC100132707 - - - 7 7q36.2 uncharacterized LOC100132707 miscRNA - - - - 20121230 -9606 100132708 CYP4F30P - C2orf14 HGNC:25270 2 2q21.1 cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene pseudo CYP4F30P cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene O - 20121230 -9606 100132712 LOC100132712 - - - 5 5q31.3 nicotinamide phosphoribosyltransferase pseudogene pseudo - - - - 20121230 -9606 100132722 RPL15P21 - RPL15_8_1514 HGNC:36190 17 17p12 ribosomal protein L15 pseudogene 21 pseudo RPL15P21 ribosomal protein L15 pseudogene 21 O - 20121230 -9606 100132723 LOC100132723 - - - 22 22q11.1 single stranded DNA binding protein 4 pseudogene pseudo - - - - 20121230 -9606 100132724 DCAF13P3 - - HGNC:43868 15 15q21.2 DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo DCAF13P3 DDB1 and CUL4 associated factor 13 pseudogene 3 O - 20121230 -9606 100132731 LOC100132731 - - Ensembl:ENSG00000187695 3 3q21.3 uncharacterized LOC100132731 protein-coding - - - - 20121230 -9606 100132733 ANKRD20A13P - - HGNC:43604 1 1q21.1 ankyrin repeat domain 20 family, member A13, pseudogene pseudo ANKRD20A13P ankyrin repeat domain 20 family, member A13, pseudogene O - 20121230 -9606 100132735 LOC100132735 - - - 6 6q24.1 uncharacterized LOC100132735 miscRNA - - - - 20121230 -9606 100132736 LOC100132736 - - - 6 6q15 family with sequence similarity 64, member A pseudogene pseudo - - - - 20121230 -9606 100132741 LOC100132741 - - - X Xq13.1 uncharacterized LOC100132741 miscRNA - - - - 20121209 -9606 100132742 RPL17P7 hCG_39912 RPL17L|RPL17_3_82 HGNC:36005 1 1p13.3 ribosomal protein L17 pseudogene 7 pseudo RPL17P7 ribosomal protein L17 pseudogene 7 O - 20121230 -9606 100132753 RFKP2 - - HGNC:39182 3 3q13.2 riboflavin kinase pseudogene 2 pseudo RFKP2 riboflavin kinase pseudogene 2 O - 20121230 -9606 100132759 VN1R7P - ORLP1|PHB4C5 HGNC:8496 21 21p11.2 vomeronasal 1 receptor 7 pseudogene pseudo VN1R7P vomeronasal 1 receptor 7 pseudogene O - 20121230 -9606 100132762 LOC100132762 - - - 2 2q24.2 chromosome 17 open reading frame 80 pseudogene pseudo - - - - 20121230 -9606 100132764 LOC100132764 - - - 11 11q23.2 uncharacterized LOC100132764 unknown - - - - 20120622 -9606 100132766 PABPC1P8 - - HGNC:37988 10 10q11.21 poly(A) binding protein, cytoplasmic 1 pseudogene 8 pseudo PABPC1P8 poly(A) binding protein, cytoplasmic 1 pseudogene 8 O - 20121230 -9606 100132772 LOC100132772 - - - 9 9p11.2 RAB28, member RAS oncogene family pseudogene pseudo - - - - 20121209 -9606 100132773 LOC100132773 - - - 5 5p15.33 serine/threonine-protein phosphatase 4 regulatory subunit 2-like pseudo - - - - 20121230 -9606 100132774 KDM4A-AS1 - - HGNC:40528 1 1p34.1 KDM4A antisense RNA 1 miscRNA KDM4A-AS1 KDM4A antisense RNA 1 O - 20121230 -9606 100132778 LOC100132778 - - - 5 5p15.1 nascent polypeptide-associated complex alpha subunit pseudogene pseudo - - - - 20121230 -9606 100132781 LOC100132781 - - - 9 9q22.33 cyclin Y-like 1 pseudogene pseudo - - - - 20121230 -9606 100132789 LOC100132789 - - - 5 5p13.1 transmembrane protein 126A pseudogene pseudo - - - - 20121230 -9606 100132790 LOC100132790 - - - 9 9p12 uncharacterized LOC100132790 unknown - - - - 20120710 -9606 100132795 RPL12P32 - RPL12_12_1226 HGNC:36597 12 12p11.21 ribosomal protein L12 pseudogene 32 pseudo RPL12P32 ribosomal protein L12 pseudogene 32 O - 20121230 -9606 100132796 MKI67IPP6 - - HGNC:44954 19 19q13.41 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 6 pseudo MKI67IPP6 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 6 O - 20121230 -9606 100132797 LOC100132797 - - - 12 12q12 fragile X mental retardation, autosomal homolog 1 pseudogene pseudo - - - - 20121230 -9606 100132800 LOC100132800 - - - 19 19q13.33 uncharacterized LOC100132800 protein-coding - - - - 20120511 -9606 100132803 LOC100132803 - - - 6 6q25.3 heterogeneous nuclear ribonucleoprotein H1 (H) pseudogene pseudo - - - - 20121230 -9606 100132808 RBMX2P2 - - HGNC:39924 X Xq27.2 RNA binding motif protein, X-linked 2 pseudogene 2 pseudo RBMX2P2 RNA binding motif protein, X-linked 2 pseudogene 2 O - 20121230 -9606 100132812 LOC100132812 - - - 8 8q13.2 nascent polypeptide-associated complex alpha subunit 2 pseudogene pseudo - - - - 20121230 -9606 100132813 LOC100132813 - - - 8 8q23.2 uncharacterized LOC100132813 unknown - - - - 20121102 -9606 100132815 LOC100132815 - - - 19 19p12 importin 5 pseudogene pseudo - - - - 20121230 -9606 100132817 LOC100132817 - - - 15 15q11.2 chromosome 16 open reading frame 61 pseudogene pseudo - - - - 20121230 -9606 100132824 LOC100132824 - - - 15 15q14 tubulin alpha-1C chain-like pseudo - - - - 20121230 -9606 100132830 LOC100132830 - - - 6 6q16.1 zinc finger CCCH-type containing 14 pseudogene pseudo - - - - 20121230 -9606 100132831 LOC100132831 - - - X Xp11.4 A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo - - - - 20121230 -9606 100132832 LOC100132832 - - - 7 7q11.23 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100132834 LOC100132834 - - - 6 6q13 coiled-coil domain containing 112 pseudogene pseudo - - - - 20121230 -9606 100132841 LOC100132841 - - - 4 4q31.21 nicotinamide nucleotide adenylyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100132842 LOC100132842 - - - X Xp11.22 uncharacterized LOC100132842 pseudo - - - - 20121209 -9606 100132849 LOC100132849 - - - 2 2q33.3 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit pseudogene pseudo - - - - 20121230 -9606 100132850 LOC100132850 - - - 3 3p22.1 uncharacterized LOC100132850 unknown - - - - 20120511 -9606 100132857 LOC100132857 - - - X Xp22.2 heat shock protein 90kDa alpha (cytosolic), class B member 1 pseudogene pseudo - - - - 20121230 -9606 100132858 LOC100132858 - - - 7 7p22.3 putative protein FAM157B-like protein-coding - - - - 20121209 -9606 100132859 LOC100132859 - - - 9 9q13 protein FAM27E2-like protein-coding - - - - 20121209 -9606 100132863 HMGB1P37 - - HGNC:39184 9 9q33.2 high mobility group box 1 pseudogene 37 pseudo HMGB1P37 high mobility group box 1 pseudogene 37 O - 20121230 -9606 100132865 LOC100132865 - - - 1 1p36.21 PRAME family member 17-like pseudo - - - - 20121230 -9606 100132871 LOC100132871 - - - 9 9q13 RAB28, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100132874 LOC100132874 - - - 9 9p11.2 uncharacterized LOC100132874 protein-coding - - - - 20120511 -9606 100132884 LOC100132884 - - - 7 7q36.1 uncharacterized LOC100132884 unknown - - - - 20121017 -9606 100132891 LOC100132891 - - - 8 8q13.3 uncharacterized LOC100132891 miscRNA - - - - 20121230 -9606 100132900 LOC100132900 - - - 22 22q11.21 immunoglobulin superfamily member 3-like protein-coding - - - - 20121209 -9606 100132906 RPL13AP10 - RPL13A_2_89 HGNC:36864 1 1p13.2 ribosomal protein L13a pseudogene 10 pseudo RPL13AP10 ribosomal protein L13a pseudogene 10 O - 20121230 -9606 100132910 LOC100132910 - - - 18 18q12.2 PRO1477 unknown - - - - 20120710 -9606 100132911 DPH3P1 - C20orf143|DPH3B|ZCSL1|dJ885L7.5 HGNC:16136 20 20q13.33 DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1 protein-coding DPH3P1 DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1 O CSL-type zinc finger-containing protein 1|DPH3 homolog B (KTI11, S. cerevisiae)|putative DPH3 homolog B|zinc finger, CSL domain containing 1 20121230 -9606 100132913 LOC100132913 - - - 1 1p11.2 uncharacterized LOC100132913 miscRNA - - - - 20121209 -9606 100132916 FAM159B - - HGNC:34236|Ensembl:ENSG00000145642|Vega:OTTHUMG00000162292 5 5q12.3 family with sequence similarity 159, member B protein-coding FAM159B family with sequence similarity 159, member B O membrane protein FAM159B 20121230 -9606 100132917 LOC100132917 - - - 6 6q22.1 RAP1B, member of RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100132918 LOC100132918 - - - 3 3q26.33 eukaryotic translation initiation factor 4E pseudogene pseudo - - - - 20121230 -9606 100132920 CICP4 - - HGNC:37753 20 20q13.33 capicua homolog (Drosophila) pseudogene 4 pseudo CICP4 capicua homolog (Drosophila) pseudogene 4 O - 20121209 -9606 100132922 RPL6P11 - - - 4 4q32.1 ribosomal protein L6 pseudogene pseudo - - - - 20121230 -9606 100132923 FAM66D - - HGNC:24159 8 8p23.1 family with sequence similarity 66, member D miscRNA FAM66D family with sequence similarity 66, member D O - 20121230 -9606 100132924 RPL13AP19 - RPL13A_6_1040 HGNC:35855 10 10q11.23 ribosomal protein L13a pseudogene 19 pseudo RPL13AP19 ribosomal protein L13a pseudogene 19 O - 20121230 -9606 100132929 FAM25B RP11-144G6.3 FAM25A|FAM25C|FAM25G|bA144G6.8 HGNC:23584|Ensembl:ENSG00000189090|Vega:OTTHUMG00000018117 10 10q11.22 family with sequence similarity 25, member B protein-coding FAM25B family with sequence similarity 25, member B O protein FAM25|protein FAM25B 20121230 -9606 100132932 FAM197Y9 - - HGNC:37477 Y Yp11.2 family with sequence similarity 197, Y-linked, member 9 protein-coding FAM197Y9 family with sequence similarity 197, Y-linked, member 9 O - 20121209 -9606 100132938 AQP7P4 RP11-381O7.1 - HGNC:32056 9 9q13 aquaporin 7 pseudogene 4 pseudo AQP7P4 aquaporin 7 pseudogene 4 O - 20121230 -9606 100132940 LOC100132940 - - - 5 5p12 slowmo homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100132941 LOC100132941 - - - 16 16p11.2 Ig heavy chain V-III region VH26-like other - - - - 20121209 -9606 100132942 LOC100132942 - - - 1 1p36.21 uncharacterized LOC100132942 unknown - - - - 20120622 -9606 100132947 LOC100132947 - - - 9 9q13 uncharacterized LOC100132947 pseudo - - - - 20121209 -9606 100132948 FAM27C RP11-374M1.1 FAM27A3|bA374M1.5 HGNC:23668 9 9p11.2 family with sequence similarity 27, member C miscRNA FAM27C family with sequence similarity 27, member C O - 20121230 -9606 100132949 LOC100132949 - - - 9 9p11.2 RNA binding motif protein 17 pseudogene pseudo - - - - 20121230 -9606 100132961 RPS21P2 - RPS21_1_254 HGNC:36191 2 2q12.2 ribosomal protein S21 pseudogene 2 pseudo RPS21P2 ribosomal protein S21 pseudogene 2 O - 20121230 -9606 100132963 SMIM9 hCG_1808463 CXorf68 HGNC:41915|Ensembl:ENSG00000203870|Vega:OTTHUMG00000024243 X Xq28 small integral membrane protein 9 protein-coding SMIM9 small integral membrane protein 9 O - 20121230 -9606 100132965 GYG1P1 - - HGNC:39712 8 8q21.11 glycogenin 1 pseudogene 1 pseudo GYG1P1 glycogenin 1 pseudogene 1 O - 20121230 -9606 100132967 FAM223A - CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX HGNC:30612 X Xq28 family with sequence similarity 223, member A (non-protein coding) miscRNA FAM223A family with sequence similarity 223, member A (non-protein coding) O - 20121230 -9606 100132972 LOC100132972 - - - 17 17q11.1 synaptophysin-like 1 pseudogene pseudo - - - - 20121230 -9606 100132973 LOC100132973 - - - 19 19p13.2 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) pseudogene pseudo - - - - 20121230 -9606 100132977 LOC100132977 - - - 17 17p11.2 chromosome 2 open reading frame 27B pseudogene pseudo - - - - 20121230 -9606 100132978 ATP6V0CP1 - ATCD1 HGNC:31323 17 17p13.2 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 1 pseudo ATP6V0CP1 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 1 O - 20121230 -9606 100132979 GOLGA8DP - GOLGA8D HGNC:32376 15 15q11.2 golgin A8 family, member D, pseudogene pseudo GOLGA8DP golgin A8 family, member D, pseudogene O - 20121230 -9606 100132984 LOC100132984 - - - X Xp11.22 uncharacterized LOC100132984 miscRNA - - - - 20121018 -9606 100132987 LOC100132987 - - - 10 10q22.3 uncharacterized LOC100132987 miscRNA - - - - 20121230 -9606 100132988 RPL37AP3 - RPL37A_1_734 HGNC:36222 6 6q21 ribosomal protein L37a pseudogene 3 pseudo RPL37AP3 ribosomal protein L37a pseudogene 3 O - 20121230 -9606 100132992 HMGN1P30 - - HGNC:39374 18 18q21.31 high mobility group nucleosome binding domain 1 pseudogene 30 pseudo HMGN1P30 high mobility group nucleosome binding domain 1 pseudogene 30 O - 20121230 -9606 100132993 RPS21P3 - RPS21_2_494 HGNC:36847 4 4q21.21 ribosomal protein S21 pseudogene 3 pseudo RPS21P3 ribosomal protein S21 pseudogene 3 O - 20121230 -9606 100132994 CXorf49B RP11-402P6.8 - HGNC:34229 X Xq13.1 chromosome X open reading frame 49B protein-coding CXorf49B chromosome X open reading frame 49B O uncharacterized protein LOC100132994 20121209 -9606 100132995 RPS8P3 - HsT2707|RPS8_7_1602 HGNC:31000 18 18q21.2 ribosomal protein S8 pseudogene 3 pseudo RPS8P3 ribosomal protein S8 pseudogene 3 O - 20121230 -9606 100132999 LOC100132999 - - - 1 1q21.2 uncharacterized LOC100132999 unknown - - - - 20121230 -9606 100133005 RASA4DP - - HGNC:44226 7 7q22.1 RAS p21 protein activator 4CD, pseudogene pseudo RASA4DP RAS p21 protein activator 4CD, pseudogene O - 20121230 -9606 100133007 LOC100133007 - - - 6 6q12 DENN/MADD domain containing 1C pseudogene pseudo - - - - 20121230 -9606 100133012 CHEK2P1 - CHEK2L1 HGNC:37999 Y Yq11.21 checkpoint kinase 2 pseudogene 1 pseudo CHEK2P1 checkpoint kinase 2 pseudogene 1 O - 20121209 -9606 100133021 FAM74A7 - - HGNC:34037 9 9p11.2 family with sequence similarity 74, member A7 unknown FAM74A7 family with sequence similarity 74, member A7 O - 20121021 -9606 100133023 LOC100133023 - - - 16 16p11.2 Ig heavy chain V-III region VH26-like other - - - - 20121209 -9606 100133024 AMD1P1 - - HGNC:44898 10 10p12.31 adenosylmethionine decarboxylase 1 pseudogene 1 pseudo AMD1P1 adenosylmethionine decarboxylase 1 pseudogene 1 O - 20121230 -9606 100133029 LOC100133029 RP4-609E1.2 - - 1 1p31.3 sirtuin 5 pseudogene pseudo - - - - 20121230 -9606 100133032 LOC100133032 - - - 3 3p21.31 uncharacterized LOC100133032 unknown - - - - 20120710 -9606 100133036 FAM95B1 RP11-146D12.4 - HGNC:32318 9 9p12 family with sequence similarity 95, member B1 miscRNA FAM95B1 family with sequence similarity 95, member B1 O - 20121209 -9606 100133037 RPL7P4 - Em:AB023049.2|RPL7_10_678 HGNC:21634 6 6p21.33 ribosomal protein L7 pseudogene 4 pseudo RPL7P4 ribosomal protein L7 pseudogene 4 O - 20121230 -9606 100133038 RPL18AP7 - RPL18A_2_364 HGNC:35607 3 3p22.2 ribosomal protein L18a pseudogene 7 pseudo RPL18AP7 ribosomal protein L18a pseudogene 7 O - 20121230 -9606 100133039 LOC100133039 - - - 3 3p25.2 uncharacterized LOC100133039 unknown - - - - 20121230 -9606 100133040 PPP1R26P5 - KIAA0649P5 HGNC:42019 22 22q11.21 protein phosphatase 1, regulatory subunit 26 pseudogene 5 pseudo PPP1R26P5 protein phosphatase 1, regulatory subunit 26 pseudogene 5 O - 20121209 -9606 100133044 BCRP8 - - HGNC:39076 22 22q11.23 breakpoint cluster region pseudogene 8 pseudo BCRP8 breakpoint cluster region pseudogene 8 O - 20121230 -9606 100133046 KIR3DL3 XXbac-BPG525F11.1 - - 19 - killer cell immunoglobulin-like receptor three domains long cytoplasmic tail 3 protein-coding - - - - 20121209 -9606 100133050 LOC100133050 - - - 5 5q21.1 glucuronidase, beta pseudogene pseudo - - - - 20121230 -9606 100133053 CXorf51B - - HGNC:42787 X Xq27.3 chromosome X open reading frame 51B protein-coding CXorf51B chromosome X open reading frame 51B O uncharacterized protein LOC100133053 20121230 -9606 100133054 RPS9P3 - RPS9_1_598 HGNC:36635 5 5q21.1 ribosomal protein S9 pseudogene 3 pseudo RPS9P3 ribosomal protein S9 pseudogene 3 O - 20121230 -9606 100133059 LOC100133059 - - - 2 2q13 centromere protein N pseudogene pseudo - - - - 20121230 -9606 100133062 LOC100133062 - - - 9 9p24.3 chromosome 6 open reading frame 146 pseudogene pseudo - - - - 20121230 -9606 100133064 PPP1R26P2 - KIAA0649P2 HGNC:42016 22 22q11.21 protein phosphatase 1, regulatory subunit 26 pseudogene 2 pseudo PPP1R26P2 protein phosphatase 1, regulatory subunit 26 pseudogene 2 O - 20121230 -9606 100133073 LOC100133073 - - - 8 8p22 family with sequence similarity 175, member A pseudogene pseudo - - - - 20121230 -9606 100133074 SLC25A5P9 - - HGNC:35468 5 5q13.3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 9 pseudo SLC25A5P9 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 9 O - 20121230 -9606 100133077 LOC100133077 - - - 9 9q34.3 uncharacterized LOC100133077 unknown - - - - 20121209 -9606 100133079 SLC25A1P2 - - HGNC:43847 7 7q11.21 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 2 pseudo SLC25A1P2 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 2 O - 20121230 -9606 100133087 VN1R18P - - HGNC:37334 2 2p16.3 vomeronasal 1 receptor 18 pseudogene pseudo VN1R18P vomeronasal 1 receptor 18 pseudogene O - 20121230 -9606 100133089 LOC100133089 - - - 10 10q11.23 uncharacterized LOC100133089 protein-coding - - - - 20120511 -9606 100133091 LOC100133091 - - - 7 7q11.23 uncharacterized LOC100133091 miscRNA - - - - 20121230 -9606 100133092 LOC100133092 - - - 7 7q11.21 P antigen family, member 4 (prostate associated) pseudogene pseudo - - - - 20121230 -9606 100133093 FAM25G RP11-301J7.1 FAM25A|FAM25B|FAM25C|bA301J7.4 HGNC:23590|Ensembl:ENSG00000197910|Vega:OTTHUMG00000018140 10 10q11.22 family with sequence similarity 25, member G protein-coding FAM25G family with sequence similarity 25, member G O protein FAM25|protein FAM25G 20121230 -9606 100133097 LOC100133097 - - - 4 4p11 uncharacterized LOC100133097 pseudo - - - - 20121209 -9606 100133100 RPL6P8 - RPL6_8_430 HGNC:37044 3 3q25.33 ribosomal protein L6 pseudogene 8 pseudo RPL6P8 ribosomal protein L6 pseudogene 8 O - 20121230 -9606 100133102 LOC100133102 - - - 6 6q14.3 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) pseudogene pseudo - - - - 20121230 -9606 100133103 RPL7L1P13 - - HGNC:44212 4 4q25 ribosomal protein L7-like 1 pseudogene 13 pseudo RPL7L1P13 ribosomal protein L7-like 1 pseudogene 13 O - 20121230 -9606 100133106 LOC100133106 UNQ9374 - - 5 5q35.1 VCEW9374 unknown - - - - 20121230 -9606 100133108 RPL13P10 - RPL13_2_647 HGNC:35943 5 5q35.3 ribosomal protein L13 pseudogene 10 pseudo RPL13P10 ribosomal protein L13 pseudogene 10 O - 20121230 -9606 100133121 FAM27B RP11-12A20.3 FAM27A2|bA12A20.3 HGNC:23667 9 9q13 family with sequence similarity 27, member B miscRNA FAM27B family with sequence similarity 27, member B O - 20121230 -9606 100133122 RBPJP7 - - HGNC:37487 9 9p11.2 RBPJ pseudogene 7 pseudo RBPJP7 RBPJ pseudogene 7 O - 20121209 -9606 100133123 LOC100133123 - - - X Xp22.2 uncharacterized LOC100133123 miscRNA - - - - 20121230 -9606 100133127 LOC100133127 - - - 16 16p13.11 geminin, DNA replication inhibitor pseudogene 1 pseudo - - - - 20121230 -9606 100133128 LOC100133128 - - - 4 4p16.1 Beta-defensin 108B-like protein-coding - - - - 20120511 -9606 100133130 LOC100133130 PRO1102 - - 10 10q11.22 PRO1102 protein-coding - - - - 20120318 -9606 100133131 LOC100133131 - - - 4 4p16.1 uncharacterized LOC100133131 unknown - - - - 20120710 -9606 100133137 LOC100133137 - - - 16 16p12.3 geminin, DNA replication inhibitor pseudogene 2 pseudo - - - - 20121230 -9606 100133139 RPL12P41 - RPL12_21_1660 HGNC:35999 19 19q13.32 ribosomal protein L12 pseudogene 41 pseudo RPL12P41 ribosomal protein L12 pseudogene 41 O - 20121230 -9606 100133140 LOC100133140 - - - 17 - carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like pseudo - - - - 20121209 -9606 100133144 UBE2Q2P3 - - HGNC:37669 15 15q25.2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 3 pseudo UBE2Q2P3 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 3 O - 20121230 -9606 100133145 LOC100133145 - - - 17 17q25.3 uncharacterized LOC100133145 protein-coding - - - - 20120511 -9606 100133147 LOC100133147 - - - 8 8q24.12 glucosamine-phosphate N-acetyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100133150 LOC100133150 - - - 3 3q29 uncharacterized LOC100133150 pseudo - - - - 20121209 -9606 100133160 LOC100133160 - - - 9 9p13.1 S-phase kinase-associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100133161 LOC100133161 - - - 11 11p15.5 uncharacterized LOC100133161 miscRNA - - - - 20121230 -9606 100133162 RPL32P34 - RPL32_22_1617 HGNC:35903 19 19p13.3 ribosomal protein L32 pseudogene 34 pseudo RPL32P34 ribosomal protein L32 pseudogene 34 O - 20121230 -9606 100133163 BCRP7 - - HGNC:39075 22 22q11.21 breakpoint cluster region pseudogene 7 pseudo BCRP7 breakpoint cluster region pseudogene 7 O - 20121230 -9606 100133165 LOC100133165 - - - 15 15q11.2 Dexi homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100133168 CCR12P - GPR183P1 HGNC:39812 13 13q32.3 chemokine (C-C motif) receptor 12, pseudogene pseudo CCR12P chemokine (C-C motif) receptor 12, pseudogene O - 20121230 -9606 100133170 RPL11P1 - RPL11_1_236 HGNC:37021 2 2p14 ribosomal protein L11 pseudogene 1 pseudo RPL11P1 ribosomal protein L11 pseudogene 1 O - 20121230 -9606 100133171 SPANXB2 RP3-376H23.2 SPANX|SPANXB HGNC:14330|Ensembl:ENSG00000227234|Vega:OTTHUMG00000022554 X Xq27.1 SPANX family, member B2 protein-coding SPANXB2 SPANX family, member B2 O CT11.2|SPAN-Xb protein|SPAN-Xf|SPANX family member B/F|SPANX family member B1|SPANX-B|SPANX-C|SPANX-F|cancer/testis antigen 11.2|hCG2036708|nuclear-associated protein SPAN-Xb|nuclear-associated protein SPAN-Xf|sperm protein associated with the nucleus on the X chromosome B/F|sperm protein associated with the nucleus, X chromosome, family member B2 20121230 -9606 100133172 FAM66A hCG_1990697 - HGNC:30444 8 8p23.1 family with sequence similarity 66, member A miscRNA FAM66A family with sequence similarity 66, member A O - 20121230 -9606 100133175 LRLE1 - - - 8 8p23.1 liver-related low express protein 1 unknown - - - - 20120511 -9606 100133177 LOC100133177 - - - 7 7p12.1 uncharacterized LOC100133177 pseudo - - - - 20121230 -9606 100133180 DDX3YP1 - - HGNC:42171 X Xq13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 1 pseudo DDX3YP1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 1 O - 20121230 -9606 100133182 LOC100133182 - - - 16 16q24.3 uncharacterized LOC100133182 protein-coding - - - - 20120318 -9606 100133183 LOC100133183 - - - 1 1q21.2 family with sequence similarity 91, member A1 pseudogene pseudo - - - - 20121230 -9606 100133189 CTSL1P7 RP11-144G6.11-001 CTSLL7|bA144G6.6 HGNC:23635 10 10q11.22 cathepsin L1 pseudogene 7 pseudo CTSL1P7 cathepsin L1 pseudogene 7 O - 20121230 -9606 100133190 LOC100133190 - - - 10 10q23.2 uncharacterized LOC100133190 miscRNA - - - - 20121230 -9606 100133193 RPL32P28 - RPL32_18_1316 HGNC:36328 13 13q21.31 ribosomal protein L32 pseudogene 28 pseudo RPL32P28 ribosomal protein L32 pseudogene 28 O - 20121230 -9606 100133203 LOC100133203 - - - 9 9p12 RAB28, member RAS oncogene family pseudogene pseudo - - - - 20121209 -9606 100133204 C9orf147 RP11-32M23.3 bA32M23.3 HGNC:31438 9 9q32 chromosome 9 open reading frame 147 unknown C9orf147 chromosome 9 open reading frame 147 O - 20121230 -9606 100133205 LINC00240 RP11-373D17.1 C6orf41|NCRNA00240|bA373D17.1 HGNC:18772 6 6p22.2 long intergenic non-protein coding RNA 240 miscRNA LINC00240 long intergenic non-protein coding RNA 240 O - 20121230 -9606 100133206 RBM22P5 - - HGNC:39698 9 9q21.13 RNA binding motif protein 22 pseudogene 5 pseudo RBM22P5 RNA binding motif protein 22 pseudogene 5 O - 20121230 -9606 100133207 LOC100133207 - - - 14 14q32.13 uncharacterized LOC100133207 unknown - - - - 20121230 -9606 100133210 COX6B1P7 - - HGNC:37677 1 1p31.3 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 7 pseudo COX6B1P7 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 7 O - 20121230 -9606 100133211 LOC100133211 - - - 1 1p32.3 related RAS viral (r-ras) oncogene homolog 2 pseudogene pseudo - - - - 20121230 -9606 100133212 FAM108A8P - - HGNC:38508 16 16p11.2 family with sequence similarity 108, member A8, pseudogene pseudo FAM108A8P family with sequence similarity 108, member A8, pseudogene O - 20121209 -9606 100133220 GOLGA6L3 - - HGNC:37441 15 15q25.3 golgin A6 family-like 3 protein-coding GOLGA6L3 golgin A6 family-like 3 O golgi autoantigen, golgin subfamily a, 6-like 3 20121230 -9606 100133222 RPL39P27 - RPL39_13_1220 HGNC:36114 12 12p12.1 ribosomal protein L39 pseudogene 27 pseudo RPL39P27 ribosomal protein L39 pseudogene 27 O - 20121230 -9606 100133225 LOC100133225 - - - 19 19q13.41 zinc finger, DHHC-type containing 7 pseudogene pseudo - - - - 20121230 -9606 100133234 SBF1P1 - - HGNC:31098 8 8q12.1 SET binding factor 1 pseudogene 1 pseudo SBF1P1 SET binding factor 1 pseudogene 1 O - 20121230 -9606 100133235 RPL26P14 - RPL26_7_282 HGNC:36184 2 2q22.3 ribosomal protein L26 pseudogene 14 pseudo RPL26P14 ribosomal protein L26 pseudogene 14 O - 20121230 -9606 100133244 LOC100133244 - - - 17 17q12 leucine rich repeat containing 37, member A3 pseudogene pseudo - - - - 20121230 -9606 100133251 LOC100133251 - - Ensembl:ENSG00000255378|Vega:OTTHUMG00000165398 8 8p23.1 uncharacterized LOC100133251 protein-coding - - - - 20121209 -9606 100133252 LOC100133252 - - - 7 7q32.3 zinc finger protein 131 pseudogene pseudo - - - - 20121230 -9606 100133255 RPS14P5 - RPS14_3_249 HGNC:36087 2 2p11.2 ribosomal protein S14 pseudogene 5 pseudo RPS14P5 ribosomal protein S14 pseudogene 5 O - 20121230 -9606 100133259 CBX1P5 - CBX9 HGNC:21006 3 3q26.1 chromobox homolog 1 pseudogene 5 pseudo CBX1P5 chromobox homolog 1 pseudogene 5 O - 20121230 -9606 100133261 LOC100133261 - - - 4 4q32.3 cysteine and histidine-rich domain (CHORD) containing 1 pseudogene pseudo - - - - 20121230 -9606 100133262 ATP6V0E1P3 - - HGNC:41937 2 2p22.3 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 3 pseudo ATP6V0E1P3 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 3 O - 20121230 -9606 100133265 BMS1P7 - BMS1LP7|bA164N7.1 HGNC:23655|Vega:OTTHUMG00000018163 10 10q11.22 BMS1 pseudogene 7 pseudo BMS1P7 BMS1 pseudogene 7 O - 20121230 -9606 100133267 LOC100133267 - - Ensembl:ENSG00000233050|Vega:OTTHUMG00000158721 8 8p23.1 defensin, beta 130-like protein-coding - - - beta-defensin 130-like 20121230 -9606 100133268 HAUS6P2 - - HGNC:43765 20 20q11.21 HAUS augmin-like complex, subunit 6 pseudogene 2 pseudo HAUS6P2 HAUS augmin-like complex, subunit 6 pseudogene 2 O - 20121230 -9606 100133273 RPL21P80 - RPL21_32_892 HGNC:35697 8 8p12 ribosomal protein L21 pseudogene 80 pseudo RPL21P80 ribosomal protein L21 pseudogene 80 O - 20121230 -9606 100133284 LOC100133284 - - - 13 13q12.13 striatin, calmodulin binding protein pseudogene pseudo - - - - 20121230 -9606 100133285 PCDH8P1 - - HGNC:39937 13 13q14.3 protocadherin 8 pseudogene 1 pseudo PCDH8P1 protocadherin 8 pseudogene 1 O - 20121230 -9606 100133286 LOC100133286 - - - 21 21q22.12 uncharacterized LOC100133286 miscRNA - - - - 20121230 -9606 100133294 RPL34P16 - RPL34_4_651 HGNC:37033 6 6p25.1 ribosomal protein L34 pseudogene 16 pseudo RPL34P16 ribosomal protein L34 pseudogene 16 O - 20121230 -9606 100133295 CNN2P5 - - HGNC:39530 9 9q13 calponin 2 pseudogene 5 pseudo CNN2P5 calponin 2 pseudogene 5 O - 20121230 -9606 100133299 LOC100133299 UNQ1870 - - 5 5p15.2 GALI1870 unknown - - - - 20121230 -9606 100133300 LOC100133300 - - - 9 9p12 FK506 binding protein 4, 59kDa pseudogene pseudo - - - - 20121230 -9606 100133301 LOC100133301 - - - 1 1p36.13 UPF0627 protein ENSP00000364708 protein-coding - - - - 20121230 -9606 100133302 LOC100133302 - - - 9 9p12 FK506 binding protein 4, 59kDa pseudogene pseudo - - - - 20121230 -9606 100133306 LOC100133306 - - - 11 11q13.3 uncharacterized LOC100133306 unknown - - - - 20120511 -9606 100133307 CYP1D1P RP11-71A24.3 CYP1A8P|CYP1D1 HGNC:39968 9 9q21.13 cytochrome P450, family 1, subfamily D, polypeptide 1, pseudogene pseudo CYP1D1P cytochrome P450, family 1, subfamily D, polypeptide 1, pseudogene O - 20121230 -9606 100133308 RSU1P2 - - HGNC:44391 10 10q11.21 Ras suppressor protein 1 pseudogene 2 pseudo RSU1P2 Ras suppressor protein 1 pseudogene 2 O - 20121230 -9606 100133309 LOC100133309 - - - 11 11q12.1 eukaryotic translation initiation factor 4A2 pseudogene pseudo - - - - 20121230 -9606 100133310 HMGB1P28 - - HGNC:39119 4 4p13 high mobility group box 1 pseudogene 28 pseudo HMGB1P28 high mobility group box 1 pseudogene 28 O - 20121230 -9606 100133311 HOXA-AS3 - - HGNC:43748 7 7p15.2 HOXA cluster antisense RNA 3 miscRNA HOXA-AS3 HOXA cluster antisense RNA 3 O - 20121230 -9606 100133312 LOC100133312 - - - 9 9p11.2 protein FAM27E3-like pseudo - - - - 20121209 -9606 100133314 SETP1 - SETP|SETP19 HGNC:19279 14 14q11.2 SET pseudogene 1 pseudo SETP1 SET pseudogene 1 O - 20121230 -9606 100133315 LOC100133315 - - - 11 11q13.4 transient receptor potential cation channel, subfamily C, member 2-like pseudo - - - - 20121230 -9606 100133316 LOC100133316 - - - 9 9q21.13 required for meiotic nuclear division 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100133317 LOC100133317 - - - 7 7p14.3 protein dpy-19 homolog 1-like pseudo - - - - 20121209 -9606 100133319 PRO1804 - - - 17 17q24.3 uncharacterized LOC100133319 miscRNA - - - - 20121017 -9606 100133321 KLF17P1 - - HGNC:41521 12 12q14.1 Kruppel-like factor 17 pseudogene 1 pseudo KLF17P1 Kruppel-like factor 17 pseudogene 1 O - 20121230 -9606 100133326 LOC100133326 - - - 3 3q29 serine/threonine-protein phosphatase 4 regulatory subunit 2-like pseudo - - - - 20121230 -9606 100133330 LOC100133330 - - - 9 9p13.1 RNA binding motif protein 17 pseudogene pseudo - - - - 20121230 -9606 100133331 LOC100133331 - - - 1 1p36.33 uncharacterized LOC100133331 miscRNA - - - - 20121230 -9606 100133398 LOC100133398 - - - - - selenoprotein K pseudogene pseudo - - - - 20120318 -9606 100133400 LOC100133400 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100133445 LOC100133445 - - - 1 1p36 uncharacterized LOC100133445 miscRNA - - - - 20121230 -9606 100133452 LOC100133452 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100133461 LOC100133461 - - - 4 - uncharacterized LOC100133461 miscRNA - - - - 20121230 -9606 100133467 LOC100133467 hCG_2045426 - - 4 - uncharacterized LOC100133467 unknown - - - - 20121017 -9606 100133478 LOC100133478 - - - 22 - mitochondrial carrier homolog 2-like pseudo - - - - 20121102 -9606 100133495 LOC100133495 - - - 4 - HERV-K_11q22.1 provirus ancestral Pol protein [Includes: Reverse transcriptase unknown - - - - 20121211 -9606 100133545 MRPL23-AS1 hCG_2045710 - HGNC:42812 11 11p15.5 MRPL23 antisense RNA 1 miscRNA MRPL23-AS1 MRPL23 antisense RNA 1 O - 20121230 -9606 100133612 LOC100133612 - - - 1 1p36.32 uncharacterized LOC100133612 miscRNA - - - - 20121230 -9606 100133616 LOC100133616 - - - 1 - uncharacterized LOC100133616 unknown - - - - 20120622 -9606 100133668 RPS27P24 - RPS27_10_1247 HGNC:37005 12 12q14.2 ribosomal protein S27 pseudogene 24 pseudo RPS27P24 ribosomal protein S27 pseudogene 24 O - 20121230 -9606 100133669 LOC100133669 hCG_1994695 - - 8 8q24.3 uncharacterized LOC100133669 miscRNA - - - - 20121230 -9606 100133683 LOC100133683 - - - 4 - hCG2042714-like unknown - - - - 20120622 -9606 100133746 LOC100133746 - - - 15 - uncharacterized LOC100133746 unknown - - - - 20121230 -9606 100133790 MUC3 - - - - - intestinal mucin-like protein-coding - - - - 20120710 -9606 100133791 ERV18-1 - - HGNC:41524 15 - endogenous retrovirus group 18, member 1 unknown ERV18-1 endogenous retrovirus group 18, member 1 O - 20120318 -9606 100133857 LOC100133857 - - - 20 - uncharacterized LOC100133857 unknown - - - - 20120508 -9606 100133862 LOC100133862 - - - Un - Ig heavy chain V-I region V35-like other - - - - 20121102 -9606 100133900 LOC100133900 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100133903 LOC100133903 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100133920 LOC100133920 - - - 2 2p11.1 uncharacterized LOC100133920 miscRNA - - - - 20121102 -9606 100133932 LOC100133932 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100133941 CD24 - CD24A HGNC:1645|MIM:600074 6 6q21 CD24 molecule protein-coding CD24 CD24 molecule O CD24 antigen (small cell lung carcinoma cluster 4 antigen)|signal transducer CD24 20121230 -9606 100133957 LOC100133957 - - - X - uncharacterized LOC100133957 miscRNA - - - - 20121230 -9606 100133985 LOC100133985 - - - 2 2p13.3 uncharacterized LOC100133985 miscRNA - - - - 20121230 -9606 100133991 MAP3K14-AS1 - - HGNC:44359 17 17q21.31 MAP3K14 antisense RNA 1 miscRNA MAP3K14-AS1 MAP3K14 antisense RNA 1 O - 20121230 -9606 100133995 LOC100133995 - - - 8 - uncharacterized LOC100133995 pseudo - - - - 20121102 -9606 100134015 UBOX5-AS1 - - HGNC:44111 20 - UBOX5 antisense RNA 1 miscRNA UBOX5-AS1 UBOX5 antisense RNA 1 O - 20121230 -9606 100134040 LOC100134040 - - - 7 7q36.1 uncharacterized LOC100134040 unknown - - - - 20121222 -9606 100134091 LOC100134091 - - - Un - protein FRG1B-like protein-coding - - - - 20121102 -9606 100134129 LOC100134129 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100134169 LOC100134169 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100134173 LOC100134173 - - - Un - dead end protein homolog 1-like pseudo - - - - 20121102 -9606 100134179 LOC100134179 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100134215 LOC100134215 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100134216 LOC100134216 - - - Un - uncharacterized LOC100134216 miscRNA - - - - 20121102 -9606 100134229 LOC100134229 - - - 7 7q34 uncharacterized LOC100134229 miscRNA - - - - 20121230 -9606 100134237 LOC100134237 - - - 1 - uncharacterized LOC100134237 unknown - - - - 20120508 -9606 100134240 LOC100134240 - - - 2 - uncharacterized LOC100134240 protein-coding - - - - 20120726 -9606 100134256 LOC100134256 - - - Un - Ig heavy chain V-III region VH26-like other - - - - 20121102 -9606 100134259 LOC100134259 - - - 2 2p21 uncharacterized LOC100134259 miscRNA - - - - 20121230 -9606 100134264 LOC100134264 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100134267 LOC100134267 - - - 17 - keratin-associated protein 4-8-like protein-coding - - - - 20121102 -9606 100134301 LOC100134301 - - - - - uncharacterized LOC100134301 protein-coding - - - - 20120318 -9606 100134317 LOC100134317 PP6455 - - 19 19q13.12 uncharacterized LOC100134317 miscRNA - - - - 20121230 -9606 100134340 LOC100134340 - - - Un - double homeobox protein 5-like pseudo - - - - 20121102 -9606 100134361 LOC100134361 - - - 22 - uncharacterized LOC100134361 miscRNA - - - - 20121209 -9606 100134362 LOC100134362 - - - 10 - 60S ribosomal protein L19-like pseudo - - - - 20121102 -9606 100134365 LOC100134365 - - - 2 - uncharacterized LOC100134365 miscRNA - - - - 20121102 -9606 100134368 LOC100134368 - - - 16 16p13.3 uncharacterized LOC100134368 miscRNA - - - - 20121230 -9606 100134391 LOC100134391 - - - 17 17q25.1 uncharacterized LOC100134391 miscRNA - - - - 20121230 -9606 100134409 LOC100134409 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121102 -9606 100134412 LOC100134412 - - - Un - sodium/hydrogen exchanger 9B1-like pseudo - - - - 20121102 -9606 100134415 LOC100134415 - - - Un - zinc finger protein 717-like pseudo - - - - 20121102 -9606 100134423 LOC100134423 - - - 21 - uncharacterized LOC100134423 miscRNA - - - - 20121102 -9606 100134441 LOC100134441 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100134444 KCNJ18 - KIR2.6|TTPP2 HGNC:39080|MIM:613236 17 - potassium inwardly-rectifying channel, subfamily J, member 18 protein-coding KCNJ18 potassium inwardly-rectifying channel, subfamily J, member 18 O inward rectifier potassium channel 18|thyrotoxic periodic paralysis susceptibility ion channel 20121230 -9606 100134445 LOC100134445 - - - - - uncharacterized LOC100134445 unknown - - - - 20120508 -9606 100134507 LOC100134507 - - - 7 - metaxin 2 pseudogene pseudo - - - - 20121230 -9606 100134589 LOC100134589 - - - 7 - protein FAM27E2-like pseudo - - - - 20121102 -9606 100134663 LOC100134663 - - - 7 - uncharacterized LOC100134663 protein-coding - - - - 20121102 -9606 100134713 NDUFB2-AS1 - - HGNC:40396 7 7q34 NDUFB2 antisense RNA 1 miscRNA NDUFB2-AS1 NDUFB2 antisense RNA 1 O - 20121230 -9606 100134822 LOC100134822 - - - 7 - uncharacterized LOC100134822 unknown - - - - 20121230 -9606 100134868 LOC100134868 CTD-2514C3.1 - - 20 20p11.1 uncharacterized LOC100134868 miscRNA - - - - 20121209 -9606 100134869 UBE2Q2P2 - UBE2QP2 HGNC:37440 15 15q25 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo UBE2Q2P2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 O - 20121209 -9606 100134934 TEN1 - C17orf106 HGNC:37242|MIM:613130|Ensembl:ENSG00000257949|Vega:OTTHUMG00000132686 17 17q25.1 TEN1 telomerase capping complex subunit homolog (S. cerevisiae) protein-coding TEN1 TEN1 telomerase capping complex subunit homolog (S. cerevisiae) O CST complex subunit TEN1|protein telomeric pathways with STN1 homolog|telomere length regulation protein TEN1 homolog|telomeric pathways in association with Stn1, number 1 20121230 -9606 100134937 LOC100134937 - - - 4 - uncharacterized LOC100134937 unknown - - - - 20120508 -9606 100134938 UPK3BL - UPLP HGNC:37278|Ensembl:ENSG00000267368|Vega:OTTHUMG00000165036 7 7q22.1 uroplakin 3B-like protein-coding UPK3BL uroplakin 3B-like O uroplakin-3-like protein|uroplakin-3b-like protein|uroplakin-like protein 20121230 -9606 100135063 LOC100135063 - - - 7 7q31.31 general transcription factor IIIA pseudogene pseudo - - - - 20121230 -9606 100135064 LOC100135064 - - - 9 9p24.1 general transcription factor IIIA pseudogene pseudo - - - - 20121230 -9606 100135756 ATG3P1 - AGP3|ATG3P|dJ54G6.1 HGNC:31123 20 20q12 autophagy related 3 pseudogene 1 pseudo ATG3P1 autophagy related 3 pseudogene 1 O - 20121230 -9606 100137047 JMJD7 hCG_37726 - HGNC:34397|Ensembl:ENSG00000168970|Ensembl:ENSG00000243789|Vega:OTTHUMG00000156810 15 15q15.1 jumonji domain containing 7 protein-coding JMJD7 jumonji domain containing 7 O jmjC domain-containing protein 7|jumonji domain-containing protein 7 20121230 -9606 100137049 PLA2G4B - HsT16992|cPLA2-beta HGNC:9036|MIM:606088|Ensembl:ENSG00000168970|Ensembl:ENSG00000243708|Vega:OTTHUMG00000156809 15 15q11.2-q21.3 phospholipase A2, group IVB (cytosolic) protein-coding PLA2G4B phospholipase A2, group IVB (cytosolic) O cytosolic phospholipase A2 beta|phospholipase A2 group IVB 20121230 -9606 100141515 C17orf99 UNQ464 - HGNC:34490|Ensembl:ENSG00000187997|Vega:OTTHUMG00000153871 17 17q25.3 chromosome 17 open reading frame 99 protein-coding C17orf99 chromosome 17 open reading frame 99 O GLPG464|uncharacterized protein C17orf99 20121230 -9606 100142659 CTAGE8 - - HGNC:37294 7 7q CTAGE family, member 8 unknown CTAGE8 CTAGE family, member 8 O - 20121021 -9606 100144434 EPOLM - ETOLM MIM:611631 9 9q21-q22 epilepsy, occipitotemporal lobe, and migraine with aura unknown - - - - 20120622 -9606 100144435 VTRNA3-1P - HVG4|HVGX|VAULTRC4|VTRNA3P|hvg-4 HGNC:23027 X Xp11.22 vault RNA 3-1, pseudogene pseudo VTRNA3-1P vault RNA 3-1, pseudogene O - 20121230 -9606 100144494 KDELC1P1 - - HGNC:39193 5 5q23.3 KDEL (Lys-Asp-Glu-Leu) containing 1 pseudogene 1 pseudo KDELC1P1 KDEL (Lys-Asp-Glu-Leu) containing 1 pseudogene 1 O - 20121230 -9606 100144595 LOC100144595 - - - 2 - uncharacterized LOC100144595 protein-coding - - - uncharacterized protein LOC100144595 20121230 -9606 100144596 LINC00029 RP11-305P22.7 C20orf51|NCRNA00029 HGNC:16184 20 20q13.33 long intergenic non-protein coding RNA 29 miscRNA LINC00029 long intergenic non-protein coding RNA 29 O - 20121230 -9606 100144597 LOC100144597 - - - 20 - uncharacterized LOC100144597 miscRNA - - - - 20121230 -9606 100144602 LOC100144602 - - - 4 - uncharacterized LOC100144602 miscRNA - - - - 20121230 -9606 100144603 LOC100144603 - - - 22 22q13.33 uncharacterized transcript miscRNA - - - - 20121230 -9606 100144604 LOC100144604 - - - 15 15q26.1 uncharacterized LOC100144604 miscRNA - - - - 20121230 -9606 100144631 PPP6CP - - HGNC:34077 X Xq22.3 protein phosphatase 6, catalytic subunit pseudogene pseudo PPP6CP protein phosphatase 6, catalytic subunit pseudogene O - 20121230 -9606 100144632 HPBP - - - - - phosphate binding apolipoprotein miscRNA - - - - 20120318 -9606 100144748 KLLN - KILLIN HGNC:37212|MIM:612105|Ensembl:ENSG00000227268 10 10q23 killin, p53-regulated DNA replication inhibitor protein-coding KLLN killin, p53-regulated DNA replication inhibitor O killin 20121230 -9606 100144878 LRRC53 hCG_1645854 - HGNC:25255 1 1p31.3 leucine rich repeat containing 53 protein-coding LRRC53 leucine rich repeat containing 53 O - 20121101 -9606 100147744 RNU7-1 - RNU7|U7.1 HGNC:34033 12 12p13.31 RNA, U7 small nuclear 1 snRNA RNU7-1 RNA, U7 small nuclear 1 O - 20121230 -9606 100147745 RNU7-2P - U7.2 HGNC:34098 2 2q22.3 RNA, U7 small nuclear 2 pseudogene pseudo RNU7-2P RNA, U7 small nuclear 2 pseudogene O - 20121230 -9606 100147746 RNU7-3P - U7.3 HGNC:34099 6 6q25.1 RNA, U7 small nuclear 3 pseudogene pseudo RNU7-3P RNA, U7 small nuclear 3 pseudogene O - 20121230 -9606 100147747 RNU7-4P - U7.4 HGNC:34100 12 12q15 RNA, U7 small nuclear 4 pseudogene pseudo RNU7-4P RNA, U7 small nuclear 4 pseudogene O - 20120720 -9606 100147748 RNU7-5P - U7.5 HGNC:34101 15 15q21.1 RNA, U7 small nuclear 5 pseudogene pseudo RNU7-5P RNA, U7 small nuclear 5 pseudogene O - 20121021 -9606 100147749 RNU7-6P - U7.6 HGNC:34102 20 20q13.2 RNA, U7 small nuclear 6 pseudogene pseudo RNU7-6P RNA, U7 small nuclear 6 pseudogene O - 20121230 -9606 100147750 RNU5B-2P - - HGNC:34182 3 3p22.1 RNA, U5B small nuclear 2, pseudogene pseudo RNU5B-2P RNA, U5B small nuclear 2, pseudogene O - 20121021 -9606 100147751 RNU5B-3P - - HGNC:34183 3 3p21.31 RNA, U5B small nuclear 3, pseudogene pseudo RNU5B-3P RNA, U5B small nuclear 3, pseudogene O - 20121230 -9606 100147752 RNU5B-4P - - HGNC:34184 5 5q31.2 RNA, U5B small nuclear 4, pseudogene pseudo RNU5B-4P RNA, U5B small nuclear 4, pseudogene O - 20121230 -9606 100147753 RNU5B-5P - - HGNC:34185 9 9q33.3 RNA, U5B small nuclear 5, pseudogene pseudo RNU5B-5P RNA, U5B small nuclear 5, pseudogene O - 20121230 -9606 100147754 RNU5B-6P - - HGNC:34186 10 10q25.1 RNA, U5B small nuclear 6, pseudogene pseudo RNU5B-6P RNA, U5B small nuclear 6, pseudogene O - 20121021 -9606 100147755 RNU7-7P - U7.7 HGNC:34103 X Xp11.4 RNA, U7 small nuclear 7 pseudogene pseudo RNU7-7P RNA, U7 small nuclear 7 pseudogene O - 20121230 -9606 100147756 RNU7-8P - U7.8 HGNC:34104 1 1p31.1 RNA, U7 small nuclear 8 pseudogene pseudo RNU7-8P RNA, U7 small nuclear 8 pseudogene O - 20121230 -9606 100147757 RNU7-9P - U7.9 HGNC:34105 2 2q36.3 RNA, U7 small nuclear 9 pseudogene pseudo RNU7-9P RNA, U7 small nuclear 9 pseudogene O - 20121230 -9606 100147758 RNU7-10P - U7.10 HGNC:34106 3 3p24.3 RNA, U7 small nuclear 10 pseudogene pseudo RNU7-10P RNA, U7 small nuclear 10 pseudogene O - 20121230 -9606 100147759 RNU7-11P - U7.11 HGNC:34107 4 4p14 RNA, U7 small nuclear 11 pseudogene pseudo RNU7-11P RNA, U7 small nuclear 11 pseudogene O - 20121230 -9606 100147760 RNU7-12P - U7.12 HGNC:34108 10 10p12.1 RNA, U7 small nuclear 12 pseudogene pseudo RNU7-12P RNA, U7 small nuclear 12 pseudogene O - 20121230 -9606 100147761 RNU7-13P - U7.13 HGNC:34109 1 1q25.3 RNA, U7 small nuclear 13 pseudogene pseudo RNU7-13P RNA, U7 small nuclear 13 pseudogene O - 20121230 -9606 100147762 RNU7-14P - U7.14 HGNC:34110 20 20q13.2 RNA, U7 small nuclear 14 pseudogene pseudo RNU7-14P RNA, U7 small nuclear 14 pseudogene O - 20121230 -9606 100147763 RNU7-15P - U7.15 HGNC:34111 5 5q31.1 RNA, U7 small nuclear 15 pseudogene pseudo RNU7-15P RNA, U7 small nuclear 15 pseudogene O - 20121230 -9606 100147764 RNU7-16P - U7.16 HGNC:34112 7 7q32.1 RNA, U7 small nuclear 16 pseudogene pseudo RNU7-16P RNA, U7 small nuclear 16 pseudogene O - 20121230 -9606 100147765 RNU7-17P - U7.17 HGNC:34113 18 18q11.2 RNA, U7 small nuclear 17 pseudogene pseudo RNU7-17P RNA, U7 small nuclear 17 pseudogene O - 20121230 -9606 100147766 RNU7-18P - U7.18 HGNC:34114 3 3q29 RNA, U7 small nuclear 18 pseudogene pseudo RNU7-18P RNA, U7 small nuclear 18 pseudogene O - 20121230 -9606 100147767 RNU7-19P - U7.19 HGNC:34115 3 3p13 RNA, U7 small nuclear 19 pseudogene pseudo RNU7-19P RNA, U7 small nuclear 19 pseudogene O - 20121230 -9606 100147768 RNU7-20P - U7.20 HGNC:34116 7 7q36.1 RNA, U7 small nuclear 20 pseudogene pseudo RNU7-20P RNA, U7 small nuclear 20 pseudogene O - 20121230 -9606 100147769 RNU7-21P - U7.21 HGNC:34117 9 9q34.13 RNA, U7 small nuclear 21 pseudogene pseudo RNU7-21P RNA, U7 small nuclear 21 pseudogene O - 20121230 -9606 100147770 RNU7-22P - U7.22 HGNC:34118 10 - RNA, U7 small nuclear 22 pseudogene pseudo RNU7-22P RNA, U7 small nuclear 22 pseudogene O - 20121230 -9606 100147771 RNU7-23P - U7.23 HGNC:34119 11 11q13.2 RNA, U7 small nuclear 23 pseudogene pseudo RNU7-23P RNA, U7 small nuclear 23 pseudogene O - 20121230 -9606 100147773 LOC100147773 - - - 1 - uncharacterized LOC100147773 unknown - - - - 20121230 -9606 100147811 CBX1P2 - - HGNC:38656 X Xp22 chromobox homolog 1 pseudogene 2 pseudo CBX1P2 chromobox homolog 1 pseudogene 2 O - 20121230 -9606 100147812 RNU7-25P - U7.25 HGNC:34121 18 18p11.31 RNA, U7 small nuclear 25 pseudogene pseudo RNU7-25P RNA, U7 small nuclear 25 pseudogene O - 20121230 -9606 100147813 RNU7-26P - U7.26 HGNC:34122 6 6p22.1 RNA, U7 small nuclear 26 pseudogene pseudo RNU7-26P RNA, U7 small nuclear 26 pseudogene O - 20121230 -9606 100147814 RNU7-27P - U7.27 HGNC:34123 7 7q32.1 RNA, U7 small nuclear 27 pseudogene pseudo RNU7-27P RNA, U7 small nuclear 27 pseudogene O - 20121230 -9606 100147815 RNU7-28P - U7.28 HGNC:34124 11 11p15.4 RNA, U7 small nuclear 28 pseudogene pseudo RNU7-28P RNA, U7 small nuclear 28 pseudogene O - 20121230 -9606 100147816 RNU7-29P - U7.29 HGNC:34125 1 1p35.3 RNA, U7 small nuclear 29 pseudogene pseudo RNU7-29P RNA, U7 small nuclear 29 pseudogene O - 20121230 -9606 100147817 RNU7-30P - U7.30 HGNC:34126 14 14q32.11 RNA, U7 small nuclear 30 pseudogene pseudo RNU7-30P RNA, U7 small nuclear 30 pseudogene O - 20121230 -9606 100147818 RNU7-31P - U7.31 HGNC:34127 17 17p13.2 RNA, U7 small nuclear 31 pseudogene pseudo RNU7-31P RNA, U7 small nuclear 31 pseudogene O - 20121021 -9606 100147819 RNU7-32P - U7.32 HGNC:34128 3 3q26.2 RNA, U7 small nuclear 32 pseudogene pseudo RNU7-32P RNA, U7 small nuclear 32 pseudogene O - 20121230 -9606 100147820 RNU7-33P - U7.33 HGNC:34129 4 4p16.3 RNA, U7 small nuclear 33 pseudogene pseudo RNU7-33P RNA, U7 small nuclear 33 pseudogene O - 20120720 -9606 100147821 RNU7-34P - U7.34 HGNC:34130 5 5q23.1 RNA, U7 small nuclear 34 pseudogene pseudo RNU7-34P RNA, U7 small nuclear 34 pseudogene O - 20121230 -9606 100147822 RNU7-35P - U7.35 HGNC:34131 7 7p14.1 RNA, U7 small nuclear 35 pseudogene pseudo RNU7-35P RNA, U7 small nuclear 35 pseudogene O - 20121230 -9606 100147823 RNU7-36P - U7.36 HGNC:34132 9 9p13.3 RNA, U7 small nuclear 36 pseudogene pseudo RNU7-36P RNA, U7 small nuclear 36 pseudogene O - 20121230 -9606 100147824 RNU7-37P - U7.37 HGNC:34133 X Xp11.22 RNA, U7 small nuclear 37 pseudogene pseudo RNU7-37P RNA, U7 small nuclear 37 pseudogene O - 20121021 -9606 100147825 RNU7-38P - U7.38 HGNC:34134 10 10q22.1 RNA, U7 small nuclear 38 pseudogene pseudo RNU7-38P RNA, U7 small nuclear 38 pseudogene O - 20121230 -9606 100147826 RNU7-39P - U7.39 HGNC:34135 12 12q13.12 RNA, U7 small nuclear 39 pseudogene pseudo RNU7-39P RNA, U7 small nuclear 39 pseudogene O - 20121230 -9606 100147827 RNU7-40P - U7.40 HGNC:34136 12 12q13.3 RNA, U7 small nuclear 40 pseudogene pseudo RNU7-40P RNA, U7 small nuclear 40 pseudogene O - 20121230 -9606 100147828 RNU7-41P - U7.41 HGNC:34137 14 14q13.2 RNA, U7 small nuclear 41 pseudogene pseudo RNU7-41P RNA, U7 small nuclear 41 pseudogene O - 20121230 -9606 100147829 RNU7-42P - U7.42 HGNC:34138 16 16q22.1 RNA, U7 small nuclear 42 pseudogene pseudo RNU7-42P RNA, U7 small nuclear 42 pseudogene O - 20121230 -9606 100147830 RNU7-43P - U7.43 HGNC:34139 17 17p13.1 RNA, U7 small nuclear 43 pseudogene pseudo RNU7-43P RNA, U7 small nuclear 43 pseudogene O - 20120720 -9606 100147831 RNU7-44P - U7.44 HGNC:34140 2 2q31.1 RNA, U7 small nuclear 44 pseudogene pseudo RNU7-44P RNA, U7 small nuclear 44 pseudogene O - 20121230 -9606 100147832 RNU7-45P - U7.45 HGNC:34141 2 2q33.1 RNA, U7 small nuclear 45 pseudogene pseudo RNU7-45P RNA, U7 small nuclear 45 pseudogene O - 20121230 -9606 100147833 RNU7-46P - U7.46 HGNC:34142 2 2q11.2 RNA, U7 small nuclear 46 pseudogene pseudo RNU7-46P RNA, U7 small nuclear 46 pseudogene O - 20121021 -9606 100147834 RNU7-47P - U7.47 HGNC:34143 3 3q23 RNA, U7 small nuclear 47 pseudogene pseudo RNU7-47P RNA, U7 small nuclear 47 pseudogene O - 20121230 -9606 100147835 RNU7-48P - U7.48 HGNC:34144 6 6q13 RNA, U7 small nuclear 48 pseudogene pseudo RNU7-48P RNA, U7 small nuclear 48 pseudogene O - 20121021 -9606 100147836 RNU7-49P - U7.49 HGNC:34145 11 11p15.2 RNA, U7 small nuclear 49 pseudogene pseudo RNU7-49P RNA, U7 small nuclear 49 pseudogene O - 20121230 -9606 100147837 RNU7-50P - U7.50 HGNC:34146 11 11p15.4 RNA, U7 small nuclear 50 pseudogene pseudo RNU7-50P RNA, U7 small nuclear 50 pseudogene O - 20121230 -9606 100151640 EXOSC3P1 - - HGNC:33989 21 21q22.11 exosome component 3 pseudogene 1 pseudo EXOSC3P1 exosome component 3 pseudogene 1 O - 20121230 -9606 100151641 PHKG1P4 - - HGNC:33918 7 7p11.2 phosphorylase kinase, gamma 1 pseudogene 4 pseudo PHKG1P4 phosphorylase kinase, gamma 1 pseudogene 4 O - 20121230 -9606 100151642 ATG12P1 - ATG12P HGNC:21466 17 17q25.1 autophagy related 12 pseudogene 1 pseudo ATG12P1 autophagy related 12 pseudogene 1 O - 20121230 -9606 100151643 KRTAP20-4 - KAP20.4 HGNC:34002 21 21q22.11 keratin associated protein 20-4 miscRNA KRTAP20-4 keratin associated protein 20-4 O - 20121230 -9606 100151644 OTSC8 - - HGNC:32939|MIM:612096 9 9p13.1-9q21.11 otosclerosis 8 unknown OTSC8 otosclerosis 8 O - 20120622 -9606 100151645 USF1P1 - USF1P HGNC:23773 21 21q22.11 upstream transcription factor 1 pseudogene 1 pseudo USF1P1 upstream transcription factor 1 pseudogene 1 O - 20121230 -9606 100151646 LETM1P3 - - HGNC:33986 8 8q22.2 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 3 pseudo LETM1P3 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 3 O - 20121230 -9606 100151647 RNU7-51P - U7.51 HGNC:34147 14 14q31.1 RNA, U7 small nuclear 51 pseudogene pseudo RNU7-51P RNA, U7 small nuclear 51 pseudogene O - 20121230 -9606 100151648 RNU7-52P - U7.52 HGNC:34148 17 17q23.2 RNA, U7 small nuclear 52 pseudogene pseudo RNU7-52P RNA, U7 small nuclear 52 pseudogene O - 20121230 -9606 100151649 RNU7-53P - U7.53 HGNC:34149 5 5q23.3 RNA, U7 small nuclear 53 pseudogene pseudo RNU7-53P RNA, U7 small nuclear 53 pseudogene O - 20121230 -9606 100151650 RNU7-54P - U7.54 HGNC:34150 7 7q32.1 RNA, U7 small nuclear 54 pseudogene pseudo RNU7-54P RNA, U7 small nuclear 54 pseudogene O - 20121230 -9606 100151651 RNU7-56P - U7.56 HGNC:34152 X Xp22.2 RNA, U7 small nuclear 56 pseudogene pseudo RNU7-56P RNA, U7 small nuclear 56 pseudogene O - 20121021 -9606 100151652 RNU7-57P - U7.57 HGNC:34153 1 1q21.3 RNA, U7 small nuclear 57 pseudogene pseudo RNU7-57P RNA, U7 small nuclear 57 pseudogene O - 20121230 -9606 100151653 RNU7-58P - U7.58 HGNC:34154 11 11q12.1 RNA, U7 small nuclear 58 pseudogene pseudo RNU7-58P RNA, U7 small nuclear 58 pseudogene O - 20121230 -9606 100151654 RNU7-59P - U7.59 HGNC:34155 11 11q14.1 RNA, U7 small nuclear 59 pseudogene pseudo RNU7-59P RNA, U7 small nuclear 59 pseudogene O - 20121021 -9606 100151655 RNU7-60P - U7.60 HGNC:34156 12 12p13.2 RNA, U7 small nuclear 60 pseudogene pseudo RNU7-60P RNA, U7 small nuclear 60 pseudogene O - 20121230 -9606 100151656 RNU7-61P - U7.61 HGNC:34157 16 16p11.2 RNA, U7 small nuclear 61 pseudogene pseudo RNU7-61P RNA, U7 small nuclear 61 pseudogene O - 20121230 -9606 100151657 RNU7-62P - U7.62 HGNC:34158 1 1p31.3 RNA, U7 small nuclear 62 pseudogene pseudo RNU7-62P RNA, U7 small nuclear 62 pseudogene O - 20121221 -9606 100151658 RNU7-63P - U7.63 HGNC:34159 16 16p13.2 RNA, U7 small nuclear 63 pseudogene pseudo RNU7-63P RNA, U7 small nuclear 63 pseudogene O - 20121230 -9606 100151661 CBX5P1 - - HGNC:38659 3 3p11.1 chromobox homolog 5 pseudogene 1 pseudo CBX5P1 chromobox homolog 5 pseudogene 1 O - 20121230 -9606 100151662 RNU7-64P - U7.64 HGNC:34160 2 2p11.2 RNA, U7 small nuclear 64 pseudogene pseudo RNU7-64P RNA, U7 small nuclear 64 pseudogene O - 20121230 -9606 100151663 RNU7-65P - U7.65 HGNC:34161 6 6p12.3 RNA, U7 small nuclear 65 pseudogene pseudo RNU7-65P RNA, U7 small nuclear 65 pseudogene O - 20121230 -9606 100151664 RNU7-66P - U7.66 HGNC:34162 6 6q12 RNA, U7 small nuclear 66 pseudogene pseudo RNU7-66P RNA, U7 small nuclear 66 pseudogene O - 20121021 -9606 100151665 RNU7-67P - U7.67 HGNC:34163 8 8q22.3 RNA, U7 small nuclear 67 pseudogene pseudo RNU7-67P RNA, U7 small nuclear 67 pseudogene O - 20121021 -9606 100151666 RNU7-69P - U7.69 HGNC:34165 X Xq25 RNA, U7 small nuclear 69 pseudogene pseudo RNU7-69P RNA, U7 small nuclear 69 pseudogene O - 20121230 -9606 100151667 RNU7-70P - U7.70 HGNC:34166 1 1p13.2 RNA, U7 small nuclear 70 pseudogene pseudo RNU7-70P RNA, U7 small nuclear 70 pseudogene O - 20121230 -9606 100151668 RNU7-71P - U7.71 HGNC:34167 16 16q22.2 RNA, U7 small nuclear 71 pseudogene pseudo RNU7-71P RNA, U7 small nuclear 71 pseudogene O - 20121230 -9606 100151669 RNU7-72P - U7.72 HGNC:34168 20 20q13.13 RNA, U7 small nuclear 72 pseudogene pseudo RNU7-72P RNA, U7 small nuclear 72 pseudogene O - 20121230 -9606 100151670 RNU7-73P - U7.73 HGNC:34169 3 3p22.2 RNA, U7 small nuclear 73 pseudogene pseudo RNU7-73P RNA, U7 small nuclear 73 pseudogene O - 20121230 -9606 100151671 RNU7-74P - U7.74 HGNC:34170 4 4p14 RNA, U7 small nuclear 74 pseudogene pseudo RNU7-74P RNA, U7 small nuclear 74 pseudogene O - 20121230 -9606 100151672 RNU7-75P - U7.75 HGNC:34171 5 5p13.2 RNA, U7 small nuclear 75 pseudogene pseudo RNU7-75P RNA, U7 small nuclear 75 pseudogene O - 20121230 -9606 100151673 RNU7-76P - U7.76 HGNC:34172 7 7p12.3 RNA, U7 small nuclear 76 pseudogene pseudo RNU7-76P RNA, U7 small nuclear 76 pseudogene O - 20121021 -9606 100151674 RNU7-77P - U7.77 HGNC:34173 10 10p11.21 RNA, U7 small nuclear 77 pseudogene pseudo RNU7-77P RNA, U7 small nuclear 77 pseudogene O - 20121230 -9606 100151675 RNU7-78P - U7.78 HGNC:34174 1 1q25.1 RNA, U7 small nuclear 78 pseudogene pseudo RNU7-78P RNA, U7 small nuclear 78 pseudogene O - 20120720 -9606 100151676 RNU7-79P - U7.79 HGNC:34175 15 15q25.3 RNA, U7 small nuclear 79 pseudogene pseudo RNU7-79P RNA, U7 small nuclear 79 pseudogene O - 20121230 -9606 100151677 RNU7-80P - U7.80 HGNC:34176 1 1p31.3 RNA, U7 small nuclear 80 pseudogene pseudo RNU7-80P RNA, U7 small nuclear 80 pseudogene O - 20121230 -9606 100151678 RNU7-81P - U7.81 HGNC:34177 2 2p16.1 RNA, U7 small nuclear 81 pseudogene pseudo RNU7-81P RNA, U7 small nuclear 81 pseudogene O - 20121230 -9606 100151679 RNU7-82P - U7.82 HGNC:34178 3 3q26.1 RNA, U7 small nuclear 82 pseudogene pseudo RNU7-82P RNA, U7 small nuclear 82 pseudogene O - 20121230 -9606 100151680 RNU7-83P - U7.83 HGNC:34179 7 7q31.1 RNA, U7 small nuclear 83 pseudogene pseudo RNU7-83P RNA, U7 small nuclear 83 pseudogene O - 20120720 -9606 100151681 RNU7-84P - U7.84 HGNC:34180 8 8q23.1 RNA, U7 small nuclear 84 pseudogene pseudo RNU7-84P RNA, U7 small nuclear 84 pseudogene O - 20121230 -9606 100151682 RNU7-85P - U7.85 HGNC:34181 8 8q21.13 RNA, U7 small nuclear 85 pseudogene pseudo RNU7-85P RNA, U7 small nuclear 85 pseudogene O - 20121230 -9606 100151683 RNU4ATAC - MOPD1|RNU4ATAC1|TALS|U4ATAC HGNC:34016|MIM:601428 2 2q14.2 RNA, U4atac small nuclear (U12-dependent splicing) snRNA RNU4ATAC RNA, U4atac small nuclear (U12-dependent splicing) O - 20121230 -9606 100151684 RNU6ATAC - RNU6ATAC1|U6ATAC HGNC:34017|MIM:601429 9 9q34.2 RNA, U6atac small nuclear (U12-dependent splicing) snRNA RNU6ATAC RNA, U6atac small nuclear (U12-dependent splicing) O - 20121230 -9606 100151685 RNU6ATAC2P - - HGNC:34092 5 5q11.2 RNA, U6atac small nuclear 2, pseudogene pseudo RNU6ATAC2P RNA, U6atac small nuclear 2, pseudogene O - 20121230 -9606 100151686 RNU6ATAC3P - - HGNC:34093 17 17q21.32 RNA, U6atac small nuclear 3, pseudogene pseudo RNU6ATAC3P RNA, U6atac small nuclear 3, pseudogene O - 20121230 -9606 100151687 RNU6ATAC4P - - HGNC:34094 3 3p22.2 RNA, U6atac small nuclear 4, pseudogene pseudo RNU6ATAC4P RNA, U6atac small nuclear 4, pseudogene O - 20121230 -9606 100151688 RNU6ATAC5P - - HGNC:34095 4 4q13.3 RNA, U6atac small nuclear 5, pseudogene pseudo RNU6ATAC5P RNA, U6atac small nuclear 5, pseudogene O - 20121230 -9606 100158257 NF1P7 - NF1L7 HGNC:34230 14 14q11.1 neurofibromin 1 pseudogene 7 pseudo NF1P7 neurofibromin 1 pseudogene 7 O - 20121209 -9606 100158258 NEK2P3 - - HGNC:37817 14 14q11.1 NEK2 pseudogene 3 pseudo NEK2P3 NEK2 pseudogene 3 O - 20121230 -9606 100158262 SCARNA9L - - HGNC:33559 X Xp22.12 small Cajal body-specific RNA 9-like miscRNA SCARNA9L small Cajal body-specific RNA 9-like O - 20121230 -9606 100169750 PRINS - NCRNA00074 HGNC:34235 10 10p12.1 psoriasis associated non-protein coding RNA induced by stress miscRNA PRINS psoriasis associated non-protein coding RNA induced by stress O - 20121021 -9606 100169751 RNA5S1 - RN5S1 HGNC:34362 1 1q42 RNA, 5S ribosomal 1 rRNA RNA5S1 RNA, 5S ribosomal 1 O - 20121230 -9606 100169752 LOC100169752 - - - 10 10q uncharacterized LOC100169752 miscRNA - - - - 20121230 -9606 100169753 RNA5S2 - RN5S2 HGNC:34363 1 1q42 RNA, 5S ribosomal 2 rRNA RNA5S2 RNA, 5S ribosomal 2 O - 20121230 -9606 100169754 RNA5S3 - RN5S3 HGNC:34364 1 1q42 RNA, 5S ribosomal 3 rRNA RNA5S3 RNA, 5S ribosomal 3 O - 20121230 -9606 100169755 RNA5S4 - RN5S4 HGNC:34365 1 1q42 RNA, 5S ribosomal 4 rRNA RNA5S4 RNA, 5S ribosomal 4 O - 20121209 -9606 100169756 RNA5S5 - RN5S5 HGNC:34366 1 1q42 RNA, 5S ribosomal 5 rRNA RNA5S5 RNA, 5S ribosomal 5 O - 20121209 -9606 100169757 RNA5S6 - RN5S6 HGNC:34367 1 1q42 RNA, 5S ribosomal 6 rRNA RNA5S6 RNA, 5S ribosomal 6 O - 20121209 -9606 100169758 RNA5S7 - RN5S7 HGNC:34368 1 1q42 RNA, 5S ribosomal 7 rRNA RNA5S7 RNA, 5S ribosomal 7 O - 20121230 -9606 100169759 RNA5S8 - RN5S8 HGNC:34369 1 1q42 RNA, 5S ribosomal 8 rRNA RNA5S8 RNA, 5S ribosomal 8 O - 20121209 -9606 100169760 RNA5S9 - RN5S9 HGNC:34370 1 1q42 RNA, 5S ribosomal 9 rRNA RNA5S9 RNA, 5S ribosomal 9 O - 20121230 -9606 100169761 RNA5S10 - RN5S10 HGNC:34371 1 1q42 RNA, 5S ribosomal 10 rRNA RNA5S10 RNA, 5S ribosomal 10 O - 20121230 -9606 100169762 RNA5S11 - RN5S11 HGNC:34372 1 1q42 RNA, 5S ribosomal 11 rRNA RNA5S11 RNA, 5S ribosomal 11 O - 20121230 -9606 100169763 RNA5S12 - RN5S12 HGNC:34373 1 1q42 RNA, 5S ribosomal 12 rRNA RNA5S12 RNA, 5S ribosomal 12 O - 20121230 -9606 100169764 RNA5S13 - RN5S13 HGNC:34374 1 1q42 RNA, 5S ribosomal 13 rRNA RNA5S13 RNA, 5S ribosomal 13 O - 20121209 -9606 100169765 RNA5S14 - RN5S14 HGNC:34375 1 1q42 RNA, 5S ribosomal 14 rRNA RNA5S14 RNA, 5S ribosomal 14 O - 20121209 -9606 100169766 RNA5S15 - RN5S15 HGNC:34376 1 1q42 RNA, 5S ribosomal 15 rRNA RNA5S15 RNA, 5S ribosomal 15 O - 20121209 -9606 100169767 RNA5S16 - RN5S16 HGNC:34377 1 1q42 RNA, 5S ribosomal 16 rRNA RNA5S16 RNA, 5S ribosomal 16 O - 20121230 -9606 100169768 RNA5S17 - RN5S17 HGNC:34378 1 1q42 RNA, 5S ribosomal 17 rRNA RNA5S17 RNA, 5S ribosomal 17 O - 20121230 -9606 100169834 RNY4P19 - - HGNC:34069 2 2q36.3 RNA, Ro-associated Y4 pseudogene 19 pseudo RNY4P19 RNA, Ro-associated Y4 pseudogene 19 O - 20121230 -9606 100169835 RNY5P7 - - HGNC:34088 10 10q24.31 RNA, Ro-associated Y5 pseudogene 7 pseudo RNY5P7 RNA, Ro-associated Y5 pseudogene 7 O - 20121230 -9606 100169836 RNY5P9 - - HGNC:34090 16 16q21 RNA, Ro-associated Y5 pseudogene 9 pseudo RNY5P9 RNA, Ro-associated Y5 pseudogene 9 O - 20121230 -9606 100169837 RNY5P10 - - HGNC:34091 19 19q13.12 RNA, Ro-associated Y5 pseudogene 10 pseudo RNY5P10 RNA, Ro-associated Y5 pseudogene 10 O - 20121230 -9606 100169850 RNY4P7 - - HGNC:34056 2 2q14.3 RNA, Ro-associated Y4 pseudogene 7 pseudo RNY4P7 RNA, Ro-associated Y4 pseudogene 7 O - 20121230 -9606 100169851 PATE3 hCG_2036778 HEL-127|PATE-DJ HGNC:35426|Ensembl:ENSG00000236027|Vega:OTTHUMG00000165857 11 11q24.2 prostate and testis expressed 3 protein-coding PATE3 prostate and testis expressed 3 O PATE-like protein DJ|acrosomal vesicle protein HEL-127|prostate and testis expressed protein 3|secreted TFP/Ly-6/uPAR protein PATE-DJ 20121230 -9606 100169881 MTPN-LUZP6 - - - 7 7q33 myotrophin, leucine zipper protein 6 transcription unit other - - - - 20121018 -9606 100169890 PEG3-AS1 - APEG3|NCRNA00155|PEG3-AS|PEG3AS HGNC:35127 19 19q13.43 PEG3 antisense RNA 1 miscRNA PEG3-AS1 PEG3 antisense RNA 1 O - 20121230 -9606 100169951 SNAR-A3 - - HGNC:34306 19 19q13.33 small ILF3/NF90-associated RNA A3 snRNA SNAR-A3 small ILF3/NF90-associated RNA A3 O - 20121209 -9606 100169952 SNAR-A5 - - HGNC:34308 19 19q13.33 small ILF3/NF90-associated RNA A5 snRNA SNAR-A5 small ILF3/NF90-associated RNA A5 O - 20121230 -9606 100169953 SNAR-A7 - - HGNC:34310 19 19q13.33 small ILF3/NF90-associated RNA A7 snRNA SNAR-A7 small ILF3/NF90-associated RNA A7 O - 20121209 -9606 100169954 SNAR-A11 - - HGNC:34314 19 19q13.33 small ILF3/NF90-associated RNA A11 snRNA SNAR-A11 small ILF3/NF90-associated RNA A11 O - 20121209 -9606 100169955 SNAR-A9 - - HGNC:34312 19 19q13.33 small ILF3/NF90-associated RNA A9 snRNA SNAR-A9 small ILF3/NF90-associated RNA A9 O - 20121209 -9606 100169956 SNAR-A4 - - HGNC:34307 19 19q13.33 small ILF3/NF90-associated RNA A4 snRNA SNAR-A4 small ILF3/NF90-associated RNA A4 O - 20121230 -9606 100169957 SNAR-A6 - - HGNC:34309 19 19q13.33 small ILF3/NF90-associated RNA A6 snRNA SNAR-A6 small ILF3/NF90-associated RNA A6 O - 20121209 -9606 100169958 SNAR-A8 - - HGNC:34311 19 19q13.33 small ILF3/NF90-associated RNA A8 snRNA SNAR-A8 small ILF3/NF90-associated RNA A8 O - 20121209 -9606 100169959 SNAR-A13 - - HGNC:34316 19 19q13.33 small ILF3/NF90-associated RNA A13 snRNA SNAR-A13 small ILF3/NF90-associated RNA A13 O - 20121209 -9606 100169989 DBIL5P2 - ELP1P HGNC:38518 2 2p15 diazepam binding inhibitor-like 5 pseudogene 2 pseudo DBIL5P2 diazepam binding inhibitor-like 5 pseudogene 2 O - 20121230 -9606 100170216 SNAR-A10 - - HGNC:34313 19 19q13.33 small ILF3/NF90-associated RNA A10 snRNA SNAR-A10 small ILF3/NF90-associated RNA A10 O - 20121209 -9606 100170217 SNAR-B2 - - HGNC:34318 19 19q13.33 small ILF3/NF90-associated RNA B2 snRNA SNAR-B2 small ILF3/NF90-associated RNA B2 O - 20121230 -9606 100170218 SNAR-C2 - - HGNC:34320 19 19q13.32 small ILF3/NF90-associated RNA C2 snRNA SNAR-C2 small ILF3/NF90-associated RNA C2 O - 20121230 -9606 100170219 SNAR-C4 - - HGNC:34322 19 19q13.32 small ILF3/NF90-associated RNA C4 snRNA SNAR-C4 small ILF3/NF90-associated RNA C4 O - 20121230 -9606 100170220 SNAR-E - - HGNC:34325 19 19q13.32 small ILF3/NF90-associated RNA E snRNA SNAR-E small ILF3/NF90-associated RNA E O - 20121230 -9606 100170221 SNAR-H - snaR-2 HGNC:34329 2 2p12 small ILF3/NF90-associated RNA H snRNA SNAR-H small ILF3/NF90-associated RNA H O - 20121230 -9606 100170222 SNAR-I - snaR-3 HGNC:34330 3 3q28 small ILF3/NF90-associated RNA I snRNA SNAR-I small ILF3/NF90-associated RNA I O - 20121230 -9606 100170223 SNAR-C5 - - HGNC:34323 19 19q13.32 small ILF3/NF90-associated RNA C5 snRNA SNAR-C5 small ILF3/NF90-associated RNA C5 O - 20121230 -9606 100170224 SNAR-B1 - - HGNC:34317 19 19q13.33 small ILF3/NF90-associated RNA B1 snRNA SNAR-B1 small ILF3/NF90-associated RNA B1 O - 20121230 -9606 100170225 SNAR-C1 - - HGNC:34319 19 19q13.32 small ILF3/NF90-associated RNA C1 snRNA SNAR-C1 small ILF3/NF90-associated RNA C1 O - 20121230 -9606 100170226 SNAR-C3 - - HGNC:34321 19 19q13.32 small ILF3/NF90-associated RNA C3 snRNA SNAR-C3 small ILF3/NF90-associated RNA C3 O - 20121230 -9606 100170227 SNAR-D - - HGNC:34324 19 19q13.33 small ILF3/NF90-associated RNA D snRNA SNAR-D small ILF3/NF90-associated RNA D O - 20121230 -9606 100170228 SNAR-G2 - - HGNC:34328 19 19q13.33 small ILF3/NF90-associated RNA G2 snRNA SNAR-G2 small ILF3/NF90-associated RNA G2 O - 20121230 -9606 100170229 SRRM5 - ZNF576 HGNC:37248|Ensembl:ENSG00000226763 19 19q13.31 serine/arginine repetitive matrix 5 protein-coding SRRM5 serine/arginine repetitive matrix 5 O serine/arginine repetitive matrix protein 5|zinc finger protein 576 20121230 -9606 100170765 C19orf69 - - HGNC:34497|Ensembl:ENSG00000204978 19 19q13.2 chromosome 19 open reading frame 69 protein-coding C19orf69 chromosome 19 open reading frame 69 O uncharacterized protein C19orf69 20121230 -9606 100170841 C17orf96 - - HGNC:34493|Ensembl:ENSG00000179294|Vega:OTTHUMG00000132343 17 17q12 chromosome 17 open reading frame 96 protein-coding C17orf96 chromosome 17 open reading frame 96 O Uncharacterized protein ENSP00000317905|uncharacterized protein C17orf96 20121230 -9606 100170939 LOC100170939 - - - 5 5q13 glucuronidase, beta pseudogene pseudo - - - - 20121230 -9606 100174857 GSTA4P - - - 6 6p12.1 glutathione S-transferase alpha 4 pseudogene pseudo - - - - 20121230 -9606 100174949 TRIM59-IFT80 - IFT80-L - 3 3q26.1 TRIM59-IFT80 protein protein-coding - - - - 20120318 -9606 100174950 LOC100174950 - - - 4 4q speckle-type POZ protein-like pseudogene pseudo - - - - 20121230 -9606 100187710 CRCS6 - - MIM:612231 8 8q23 colorectal cancer, susceptibility to, 6 unknown - - - - 20120622 -9606 100187711 CRCS7 - - MIM:612232 11 11q23 colorectal cancer, susceptibility to, 7 unknown - - - - 20120622 -9606 100187716 MIR1224 - MIRN1224 HGNC:33923|MIM:611620|miRBase:MI0003764 3 3q27.1 microRNA 1224 miscRNA MIR1224 microRNA 1224 O - 20121230 -9606 100187717 NNO3 - - MIM:611897 2 2q11-q14 nanophthalmos 3 unknown - - - - 20120622 -9606 100187724 AUTS14 - AUTS14A|C16DELp11.2|C16DUPp11.2|DUP16p11.2 MIM:611913 16 16p11.2 autism, susceptibility to, 14 unknown - - - - 20120622 -9606 100187725 LOC100187725 - - - 15 15q21.1 5-azacytidine induced 2 pseudogene pseudo - - - - 20121230 -9606 100187749 ASDP - - MIM:105563 - - anal sphincter dysplasia unknown - - - - 20120622 -9606 100187761 AN - - MIM:110350 - - blood group Ahonen unknown - - - - 20120318 -9606 100187828 HBD - - MIM:146350 - - hypophosphatemic bone disease unknown - - - - 20120318 -9606 100187907 TRAP - - MIM:190445 - - triiodothyronine receptor auxiliary protein protein-coding - - - - 20120318 -9606 100188011 DIP - - MIM:263000 - - interstitial pneumonitis, desquamative, familial unknown - - - - 20120318 -9606 100188278 FECD2 - FCD1 MIM:610158 13 13pter-q12.13 corneal dystrophy, Fuchs endothelial 2 unknown - - - - 20120622 -9606 100188314 AUTS12 - - MIM:610838 21 21p13-q11 autism, susceptibility to, 12 unknown - - - - 20120622 -9606 100188317 AUTS13 - - MIM:610908 12 12q14.2 autism, susceptibility to, 13 unknown - - - - 20120622 -9606 100188321 HYT8 - - MIM:611014 18 18q21.2 hypertension, essential, susceptibility to, 8 unknown - - - - 20120622 -9606 100188328 PNKD2 - - MIM:611147 2 2q31 paroxysmal nonkinesigenic dyskinesia 2 unknown - - - - 20120622 -9606 100188340 AOS - - MIM:100300 - - Adams-Oliver syndrome unknown - - - - 20120622 -9606 100188397 HLP - - MIM:144150 - - hyperkeratosis lenticularis perstans unknown - - - - 20120622 -9606 100188695 DA4 - - MIM:609128 - - arthrogryposis, distal, type 4 unknown - - - - 20120318 -9606 100188748 STHAG5 - - MIM:610926 10 10q tooth agenesis, selective, 5 unknown - - - - 20120622 -9606 100188754 AD14 - - MIM:611154 1 1q25 Alzheimer disease 14 unknown - - - - 20120622 -9606 100188765 CFTDX - - MIM:300580 X Xq13.1-q22.1 Myopathy, congenital, with fiber-type disproportion, X-linked unknown - - - - 20120622 -9606 100188767 AGSPX - - MIM:300652 X Xp11.3-q12 Angio serpiginosum unknown - - - - 20120622 -9606 100188768 SCAX5 - - MIM:300703 X Xq25-q27.1 Spinocerebellar ataxia, X-linked 5 unknown - - - - 20120622 -9606 100188769 HPCX2 - - MIM:300704 X Xp11.22 Prostate cancer, hereditary, X-linked 2 unknown - - - - 20120622 -9606 100188771 AGA2 - - MIM:300710 X Xq11-q12 Alopecia, androgenetic, 2 unknown - - - - 20120622 -9606 100188772 IHPS4 - - MIM:300711 X Xq23 Pyloric stenosis, infantile hypertrophic, 4 unknown - - - - 20120622 -9606 100188773 CFSS - - MIM:300712 X Xq26-q27 craniofacioskeletal syndrome unknown - - - - 20120622 -9606 100188774 DFCTRPS - - MIM:300719 X - Deafness, cataract, retinitis pigmentosa, and sperm abnormalities unknown - - - - 20120622 -9606 100188775 LOAS - - MIM:308905 X Xp11 Leber optic atrophy, susceptibility to unknown - - - - 20120622 -9606 100188776 HEY - - MIM:425500 Y Yq hairy ears, Y-linked unknown - - - - 20120318 -9606 100188782 NIDDM4 - - MIM:608036 5 5q34-q35.2 Diabetes mellitus, noninsulin-dependent unknown - - - - 20120622 -9606 100188784 AFA1 - MPB MIM:109200 3 3q26 Alopecia, androgenetic unknown - - - - 20120622 -9606 100188785 ITC1 - - MIM:145701 8 8q22 hypertrichosis universalis congenita, Ambras type unknown - - - - 20120318 -9606 100188787 WM1 - - MIM:153600 6 6p21.3 Macroglobulinemia, Waldenstrom, susceptibility to, 1 unknown - - - - 20120622 -9606 100188788 MICRODEL3Q29 - - MIM:609425 3 3q29 Chromosome 3q29 microdeletion syndrome unknown - - - - 20120622 -9606 100188789 HPC6 - - MIM:609558 22 22q12.3 Prostate cancer, susceptibility to unknown - - - - 20120622 -9606 100188790 MGR8 - - MIM:609570 5 5q21 Migraine, susceptibility to, 8 unknown - - - - 20120622 -9606 100188791 CLLS1 - - MIM:609630 11 11q13.3 Leukemia, chronic lymphocytic, susceptibility to, 1 unknown - - - - 20120622 -9606 100188792 MAFD3 - BPEO MIM:609633 21 21q22.13 Major affective disorder 3, early onset unknown - - - - 20120622 -9606 100188793 BSZQTL - - MIM:609656 17 17q23 Bone size QTL unknown - - - - 20120622 -9606 100188794 BSZQTL2 - - MIM:609657 5 5q Bone size QTL unknown - - - - 20120622 -9606 100188795 AD11 - - MIM:609790 9 9p22.1 Alzheimer disease-11 unknown - - - - 20120622 -9606 100188796 GEFSP4 - - MIM:609800 2 2p24 Epilepsy, generalized, with febrile seizures plus, type 4 unknown - - - - 20120622 -9606 100188797 BMND6 - - MIM:609876 21 21q22.13-qter Bone mineral density QTL 6 unknown - - - - 20120622 -9606 100188798 SLEB5 - - MIM:609903 13 13q32 Systemic lupus erythematosus, susceptibility to, 5 unknown - - - - 20120622 -9606 100188800 ASPG4 - - MIM:609954 3 3p24-p21 Asperger syndrome, susceptibility to, 4 unknown - - - - 20120622 -9606 100188801 ASRT3 - - MIM:609958 2 2p16 Asthma-related traits, susceptibility to, 3 unknown - - - - 20120622 -9606 100188802 ODS1 - - MIM:610064 17 - Opioid dependence, susceptibility to, 1 unknown - - - - 20120622 -9606 100188803 SLEB7 - - MIM:610065 20 20p12 Systemic lupus erythematosus, susceptibility to, 7 unknown - - - - 20120622 -9606 100188804 SLEB8 - - MIM:610066 20 20q13 Systemic lupus erythematosus, susceptibility to, 8 unknown - - - - 20120622 -9606 100188805 STBMS1 - - MIM:185100 7 7p22.1 Strabismus, susceptibility to, 1 unknown - - - - 20120622 -9606 100188806 HDLCQ4 - - MIM:610239 4 4q32.3 High density lipoprotein cholesterol level QTL 4 unknown - - - - 20120622 -9606 100188807 HYT5 - - MIM:610261 20 20q11-q13 Hypertension, essential, susceptibility to, 5 unknown - - - - 20120622 -9606 100188808 HYT6 - - MIM:610262 5 5p13-q12 Hypertension, essential, susceptibility to, 6 unknown - - - - 20120622 -9606 100188809 HPC7 - - MIM:610321 15 15q12 Prostate cancer, hereditary, 7 unknown - - - - 20120622 -9606 100188810 ANIB5 - - MIM:610402 2 2p15-q14 Aneurysm, intracranial berry, 5 unknown - - - - 20120622 -9606 100188811 WM2 - - MIM:610430 4 4q Macroglobulinemia, Waldenstrom, susceptibility to, 2 unknown - - - - 20120622 -9606 100188812 RLS3 - - MIM:610438 9 9p24-p22 Restless legs syndrome 3 unknown - - - - 20120622 -9606 100188813 RLS4 - - MIM:610439 2 2q33 Restless legs syndrome 4 unknown - - - - 20120622 -9606 100188814 RSTSS - - MIM:610543 16 16p13.3 Chromosome 16p13.3 deletion syndrome unknown - - - - 20120622 -9606 100188815 BSZQTL3 - - MIM:610649 8 8q24 Bone size quantitative trait locus 3 unknown - - - - 20120622 -9606 100188816 AUTS7 - - MIM:610676 17 17q21 Autism, susceptibility to, 7 unknown - - - - 20120622 -9606 100188817 CLQTL2 - - MIM:610760 2 2p24-p22 Cholesterol level QTL 2 unknown - - - - 20120622 -9606 100188818 HDLCQ5 - - MIM:610761 3 3q24-q26 High density lipoprotein cholesterol level QTL 5 unknown - - - - 20120622 -9606 100188819 HDLCQ6 - - MIM:610762 - - High density lipoprotein cholesterol level QTL 6 unknown - - - - 20120622 -9606 100188820 AUTS11 - - MIM:610836 1 1q24.2 Autism, susceptibility to, 11 unknown - - - - 20120622 -9606 100188821 GOA1 - - MIM:610839 2 2q33.3 Osteoarthritis, generalized, without dysplasia, susceptibility to unknown - - - - 20120622 -9606 100188822 MENAQ1 - - MIM:610873 22 22q13 Menarche, age at, QTL unknown - - - - 20120622 -9606 100188823 ASRT4 - - MIM:610906 1 1p31 Asthma-related traits, susceptibility to, 4 unknown - - - - 20120622 -9606 100188825 HYT7 - - MIM:610948 3 3p14.1-q12.3 Hypertension, essential, susceptibility to, 7 unknown - - - - 20120622 -9606 100188826 HPC9 - - MIM:610997 17 17q21-q22 Prostate cancer, hereditary, 9 unknown - - - - 20120622 -9606 100188827 SQTL1 - - MIM:611003 10 10q22 Smoking as a quantitative trait locus 1 unknown - - - - 20120622 -9606 100188828 SQTL2 - - MIM:611004 22 22q12 Smoking as a quantitative trait locus 2 unknown - - - - 20120622 -9606 100188829 MTBS2 - - MIM:611046 8 8q12-q13 Mycobacterium tuberculosis, susceptibility to, 2 unknown - - - - 20120622 -9606 100188830 AD12 - - MIM:611073 8 8p12-q22 Alzheimer disease 12 unknown - - - - 20120622 -9606 100188831 MRT5 - - HGNC:39146|MIM:611091 5 5p15-p14 mental retardation, non-syndromic, autosomal recessive, 5 unknown MRT5 mental retardation, non-syndromic, autosomal recessive, 5 O - 20120622 -9606 100188832 AUTS1 - - MIM:209850 7 7q22 Autism, susceptibility to, 1 unknown - - - - 20120622 -9606 100188834 HPC10 - - MIM:611100 8 8q24 Prostate cancer, hereditary, 10 unknown - - - - 20120622 -9606 100188835 CINN - - MIM:611109 4 4q32.3 Cinnamon odor, pleasantness of unknown - - - - 20120622 -9606 100188836 CHDS8 - - MIM:611139 9 9p21 Coronary heart disease, susceptibility to, 8 unknown - - - - 20120622 -9606 100188837 AD13 - - MIM:611152 1 1q21 Alzheimer disease-13 unknown - - - - 20120622 -9606 100188838 AD15 - - MIM:611155 3 3q22-q24 Alzheimer disease-15 unknown - - - - 20120622 -9606 100188839 RLS5 - - MIM:611242 20 20p13 Restless legs syndrome, susceptibility to, 5 unknown - - - - 20120622 -9606 100188840 ASRT6 - - MIM:611403 17 17q21 Asthma-related traits, susceptibility to, 6 unknown - - - - 20120622 -9606 100188841 CRCS2 - - MIM:611469 8 8q24 Colorectal cancer, susceptibility to, 2 unknown - - - - 20120622 -9606 100188842 ATFB5 - - MIM:611494 4 4q25 Atrial fibrillation, familial, 5 unknown - - - - 20120622 -9606 100188843 MAFD5 - - MIM:611535 2 2q22-q24 Major affective disorder 5 unknown - - - - 20120622 -9606 100188844 MAFD6 - BPAD MIM:611536 6 6q23-q24 Major affective disorder 6 unknown - - - - 20120622 -9606 100188845 CODA - - MIM:611543 12 12q Cavitary optic disc anomalies unknown - - - - 20120622 -9606 100188846 CELIAC6 - AIS5 MIM:611598 4 4q27 Celiac disease, susceptibility to, 6 unknown - - - - 20120622 -9606 100188847 MIR1225 - MIRN1225 HGNC:33931|MIM:611621|miRBase:MI0006311 16 16p13.3 microRNA 1225 miscRNA MIR1225 microRNA 1225 O - 20121230 -9606 100188848 FMTLE - ETL3 MIM:611630 4 4q13.2-q21.3 Epilepsy, familial mesial temporal lobe unknown - - - - 20120622 -9606 100188849 FEB9 - - MIM:611634 3 3p24.2-p23 Febrile convulsions, familial, 9 unknown - - - - 20120622 -9606 100188850 HSCR9 - - MIM:611644 4 4q31.3-q32.3 Hirschsprung disease, susceptibility to, 9 unknown - - - - 20120622 -9606 100188851 MGR12 - - MIM:611706 10 10q22-q23 Migraine, with or without aura, susceptibility to, 12 unknown - - - - 20120622 -9606 100188852 SHEP8 - - MIM:611724 6 6p25.3 Skin/hair/eye pigmentation 8, freckling unknown - - - - 20120622 -9606 100188853 BMND7 - - MIM:611738 20 20p12.3 Osteoporosis unknown - - - - 20120622 -9606 100188854 BMND8 - - MIM:611739 11 11p12 Osteoporosis unknown - - - - 20120622 -9606 100188855 MNDEC - - MIM:611863 4 4p16-p15 Microtia with nasolacrimal duct imperforation and eye coloboma unknown - - - - 20120622 -9606 100188856 C22DDELS - C22DELq11.2 MIM:611867 22 22q11.2 Chromosome 22q11.2 deletion syndrome, distal unknown - - - - 20121118 -9606 100188857 AAA3 - - MIM:611891 9 9p21 Aneurysm, familial abdominal 3 unknown - - - - 20120622 -9606 100188858 ANIB6 - - MIM:611892 9 9p21 Aneurysm, intracranial berry, 6 unknown - - - - 20120622 -9606 100188859 EA7 - - MIM:611907 19 19q13 Episodic ataxia, type 7 unknown - - - - 20120622 -9606 100188860 CPROTQ - - MIM:611920 10 10q23-q24 C-reactive protein QTL unknown - - - - 20120622 -9606 100188861 EIG5 - - MIM:611934 10 10p11.22 Epilepsy, idiopathic generalized, susceptibility to, 5 unknown - - - - 20120622 -9606 100188862 DUP3Q29 - MICRODUP3Q29 MIM:611936 3 3q29 chromosome 3q29 microduplication syndrome unknown - - - - 20120622 -9606 100188863 ENDO1 - - MIM:131200 10 10q26 Endometriosis, susceptibility to, 1 unknown - - - - 20120622 -9606 100188864 IH - HHP MIM:235000 11 11p15 Hemihypertrophy unknown - - - - 20120622 -9606 100188865 LMPH1B - - MIM:611944 6 6q16.2-q22.1 Lymphedema, hereditary, IB unknown - - - - 20120622 -9606 100188867 HPC14 - - MIM:611958 11 11q13 Prostate cancer, hereditary, 14 unknown - - - - 20120622 -9606 100188868 HPC15 - - MIM:611959 19 19q13.4 Prostate cancer, hereditary, 15 unknown - - - - 20120622 -9606 100188869 MICRODEL15Q13.3 - EIG7|SCZD13 MIM:612001 15 15q13.3 Chromosome 15q13.3 microdeletion syndrome unknown - - - - 20120622 -9606 100188870 CELIAC8 - - MIM:612006 2 2q11-q12 Celiac disease, susceptibility to, 8 unknown - - - - 20120622 -9606 100188871 CELIAC9 - - MIM:612007 3 3p21 Celiac disease, susceptibility to, 9 unknown - - - - 20120622 -9606 100188872 CELIAC10 - - MIM:612008 3 3q25-q26 Celiac disease, susceptibility to, 10 unknown - - - - 20120622 -9606 100188873 CELIAC11 - - MIM:612009 3 3q28 Celiac disease, susceptibility to, 11 unknown - - - - 20120622 -9606 100188874 CELIAC12 - - MIM:612010 6 6q25.3 Celiac disease, susceptibility to, 12 unknown - - - - 20120622 -9606 100188875 CELIAC13 - - MIM:612011 12 12q24 Celiac disease, susceptibility to, 13 unknown - - - - 20120622 -9606 100188876 IHPS3 - - MIM:612017 11 11q14-q22 Pyloric stenosis, infantile hypertrophic, 3 unknown - - - - 20120622 -9606 100188877 CHDS9 - - MIM:612030 8 8p22 Coronary heart disease, suscpetibility to, 9 unknown - - - - 20120622 -9606 100188880 HPRHP - - MIM:612089 13 13q13.1 Hypophosphatemic rickets and hyperparathyroidism unknown - - - - 20120622 -9606 100188881 MFT2 - TEM MIM:612099 9 9p21 Trichoepithelioma, multiple familial, 2 unknown - - - - 20120622 -9606 100188882 BMND9 - - MIM:612110 13 13q14 Bone mineral density QTL 9 unknown - - - - 20120622 -9606 100188883 BMND10 - - MIM:612113 8 8q24 Bone mineral density QTL 10 unknown - - - - 20120622 -9606 100188884 BMND11 - - MIM:612114 6 6q25 Bone mineral density QTL 11 unknown - - - - 20120622 -9606 100188885 ANIB7 - - MIM:612161 11 11q24-q25 Aneurysm, intracranial berry, 7 unknown - - - - 20120622 -9606 100188886 ANIB8 - - MIM:612162 14 14q23 Aneurysm, intracranial berry, 8 unknown - - - - 20120622 -9606 100188887 CRCS5 - - MIM:612230 10 10p14 Colorectal cancer, susceptibility to, 5 unknown - - - - 20120622 -9606 100188891 ZNF123P - HZF-1|ZNF123 HGNC:12906|MIM:194630 11 11q24.3 zinc finger protein 123, pseudogene pseudo ZNF123P zinc finger protein 123, pseudogene O - 20121230 -9606 100188893 TOMM6 - OBTP HGNC:34528|Ensembl:ENSG00000214736|Vega:OTTHUMG00000137505 6 6p21.1 translocase of outer mitochondrial membrane 6 homolog (yeast) protein-coding TOMM6 translocase of outer mitochondrial membrane 6 homolog (yeast) O mitochondrial import receptor subunit TOM6 homolog|over-expressed breast tumor protein|overexpressed breast tumor protein|translocase of outer membrane 6 kDa subunit homolog 20121230 -9606 100188917 ESP33 - - - 9 9q34.3 uncharacterized locus ESP33 unknown - - - - 20121230 -9606 100188945 LOC100188945 - - - 1 1p cell division cycle associated 4 pseudogene pseudo - - - - 20121230 -9606 100188947 LOC100188947 - - - 10 10q23.32 uncharacterized LOC100188947 miscRNA - - - - 20121230 -9606 100188949 LINC00426 RP11-374F3.4 - HGNC:42761 13 13q12.3 long intergenic non-protein coding RNA 426 miscRNA LINC00426 long intergenic non-protein coding RNA 426 O - 20121230 -9606 100188952 IBD12 - - MIM:612241 3 3p21.3 Inflammatory bowel disease 12 unknown - - - - 20120622 -9606 100188953 LINC00092 - NCRNA00092|bA346B7.1 HGNC:31408 9 9q22.32 long intergenic non-protein coding RNA 92 miscRNA LINC00092 long intergenic non-protein coding RNA 92 O - 20121230 -9606 100188954 DNMBP-AS1 - NCRNA00093|bA287G8.2 HGNC:20431 10 10q24.2 DNMBP antisense RNA 1 miscRNA DNMBP-AS1 DNMBP antisense RNA 1 O - 20121230 -9606 100188985 TRNAG6 - - HGNC:34533 16 16q22.1 transfer RNA glycine 6 (anticodon GCC) tRNA TRNAG6 transfer RNA glycine 6 (anticodon GCC) O - 20121230 -9606 100188986 TRNAH1 - - HGNC:34536 15 - transfer RNA histidine 1 (anticodon GUG) tRNA TRNAH1 transfer RNA histidine 1 (anticodon GUG) O - 20121230 -9606 100188987 TRNAH3 - - HGNC:34538 6 - transfer RNA histidine 3 (anticodon GUG) tRNA TRNAH3 transfer RNA histidine 3 (anticodon GUG) O - 20121230 -9606 100188988 TRNAH2 - - HGNC:34537 15 - transfer RNA histidine 2 (anticodon GUG) tRNA TRNAH2 transfer RNA histidine 2 (anticodon GUG) O - 20121230 -9606 100188989 TRNAU3 - - HGNC:34525 17 17q21.1 transfer RNA selenocysteine 3 (anticodon UCA) tRNA TRNAU3 transfer RNA selenocysteine 3 (anticodon UCA) O - 20120318 -9606 100188990 TRNAV5 - - HGNC:34542 5 - transfer RNA valine 5 (anticodon AAC) tRNA TRNAV5 transfer RNA valine 5 (anticodon AAC) O - 20121230 -9606 100188991 TRNAH4 - - HGNC:34535 1 1q21.1 transfer RNA histidine 4 (anticodon GUG) tRNA TRNAH4 transfer RNA histidine 4 (anticodon GUG) O - 20121230 -9606 100188992 TRNAV10 - - HGNC:34543 5 - transfer RNA valine 10 (anticodon AAC) tRNA TRNAV10 transfer RNA valine 10 (anticodon AAC) O - 20121230 -9606 100188993 TRNAV11 - - HGNC:34544 11 - transfer RNA valine 11 (anticodon UAC) tRNA TRNAV11 transfer RNA valine 11 (anticodon UAC) O - 20121230 -9606 100188994 TRNAD2 - - HGNC:34551 9 - transfer RNA aspartic acid 2 (anticodon GUC) tRNA TRNAD2 transfer RNA aspartic acid 2 (anticodon GUC) O - 20120318 -9606 100188995 TRNAK4 - - HGNC:34552 18 - transfer RNA lysine 4 (anticodon CUU) tRNA TRNAK4 transfer RNA lysine 4 (anticodon CUU) O - 20121230 -9606 100188996 TRNAN4 - - HGNC:34553 1 - transfer RNA asparagine 4 (anticodon GUU) tRNA TRNAN4 transfer RNA asparagine 4 (anticodon GUU) O - 20120318 -9606 100188997 TRNAG7 - - HGNC:34554 1 - transfer RNA glycine 7 (anticodon UCC) tRNA TRNAG7 transfer RNA glycine 7 (anticodon UCC) O - 20121230 -9606 100188998 TRNAQ3 - - HGNC:34555 1 - transfer RNA glutamine 3 (anticodon CUG) tRNA TRNAQ3 transfer RNA glutamine 3 (anticodon CUG) O - 20121230 -9606 100188999 TRNAK5 - - HGNC:34556 11 - transfer RNA lysine 5 (anticodon CUU) tRNA TRNAK5 transfer RNA lysine 5 (anticodon CUU) O - 20120318 -9606 100189000 TRNAE3 - - HGNC:34557 1 - transfer RNA glutamic acid 3 (anticodon UUC) tRNA TRNAE3 transfer RNA glutamic acid 3 (anticodon UUC) O - 20120318 -9606 100189001 TRNAY3 - - HGNC:34558 14 - transfer RNA tyrosine 3 (anticodon GUA) tRNA TRNAY3 transfer RNA tyrosine 3 (anticodon GUA) O - 20121230 -9606 100189002 TRNAS5 - - HGNC:34559 6 - transfer RNA serine 5 (anticodon GCU) tRNA TRNAS5 transfer RNA serine 5 (anticodon GCU) O - 20121230 -9606 100189003 TRNAL3 - - HGNC:34560 1 - transfer RNA leucine 3 (anticodon CAA) tRNA TRNAL3 transfer RNA leucine 3 (anticodon CAA) O - 20121230 -9606 100189004 TRNAL4 - - HGNC:34561 5 - transfer RNA leucine 4 (anticodon AAG) tRNA TRNAL4 transfer RNA leucine 4 (anticodon AAG) O - 20121230 -9606 100189005 TRNAN5 - - HGNC:34562 1 - transfer RNA asparagine 5 (anticodon GUU) tRNA TRNAN5 transfer RNA asparagine 5 (anticodon GUU) O - 20121230 -9606 100189006 TRNAT4 - - HGNC:34563 19 - transfer RNA threonine 4 (anticodon AGU) tRNA TRNAT4 transfer RNA threonine 4 (anticodon AGU) O - 20121230 -9606 100189007 TRNAE4 - - HGNC:34564 13 - transfer RNA glutamic acid 4 (anticodon CUC) tRNA TRNAE4 transfer RNA glutamic acid 4 (anticodon CUC) O - 20120318 -9606 100189008 TRNAC2 - - HGNC:34566 7 - transfer RNA cysteine 2 (anticodon GCA) tRNA TRNAC2 transfer RNA cysteine 2 (anticodon GCA) O - 20121230 -9606 100189009 TRNAL5 - - HGNC:34568 1 - transfer RNA leucine 5 (anticodon CAG) tRNA TRNAL5 transfer RNA leucine 5 (anticodon CAG) O - 20121230 -9606 100189010 TRNAQ5 - - HGNC:34569 6 - transfer RNA glutamine 5 (anticodon UUG) tRNA TRNAQ5 transfer RNA glutamine 5 (anticodon UUG) O - 20120318 -9606 100189011 TRNAG8 - - HGNC:34570 1 - transfer RNA glycine 8 (anticodon UCC) tRNA TRNAG8 transfer RNA glycine 8 (anticodon UCC) O - 20121230 -9606 100189012 TRNAR5 - - HGNC:34571 6 - transfer RNA arginine 5 (anticodon UCU) tRNA TRNAR5 transfer RNA arginine 5 (anticodon UCU) O - 20121230 -9606 100189013 TRNAK6 - - HGNC:34572 15 - transfer RNA lysine 6 (anticodon CUU) tRNA TRNAK6 transfer RNA lysine 6 (anticodon CUU) O - 20121230 -9606 100189014 TRNAV12 - - HGNC:34573 6 - transfer RNA valine 12 (anticodon AAC) tRNA TRNAV12 transfer RNA valine 12 (anticodon AAC) O - 20121230 -9606 100189015 TRNAM3 - - HGNC:34574 1 - transfer RNA methionine 3 (anticodon CAU) tRNA TRNAM3 transfer RNA methionine 3 (anticodon CAU) O - 20121230 -9606 100189016 TRNAQ6 - - HGNC:34575 9 - transfer RNA glutamine 6 (anticodon CUG) tRNA TRNAQ6 transfer RNA glutamine 6 (anticodon CUG) O - 20120318 -9606 100189017 TRNAE5 - - HGNC:34576 1 - transfer RNA glutamic acid 5 (anticodon CUC) tRNA TRNAE5 transfer RNA glutamic acid 5 (anticodon CUC) O - 20121230 -9606 100189018 TRNAL6 - - HGNC:34577 1 - transfer RNA leucine 6 (anticodon CAG) tRNA TRNAL6 transfer RNA leucine 6 (anticodon CAG) O - 20121230 -9606 100189019 TRNAP4 - - HGNC:34578 1 - transfer RNA proline 4 (anticodon AGG) tRNA TRNAP4 transfer RNA proline 4 (anticodon AGG) O - 20121230 -9606 100189020 TRNAP5 - - HGNC:34579 16 - transfer RNA proline 5 (anticodon AGG) tRNA TRNAP5 transfer RNA proline 5 (anticodon AGG) O - 20121230 -9606 100189021 TRNAA4 - - HGNC:34580 2 - transfer RNA alanine 4 (anticodon CGC) tRNA TRNAA4 transfer RNA alanine 4 (anticodon CGC) O - 20121230 -9606 100189022 TRNAY4 - - HGNC:34581 2 - transfer RNA tyrosine 4 (anticodon GUA) tRNA TRNAY4 transfer RNA tyrosine 4 (anticodon GUA) O - 20121230 -9606 100189024 TRNAE6 - - HGNC:34583 6 - transfer RNA glutamic acid 6 (anticodon CUC) tRNA TRNAE6 transfer RNA glutamic acid 6 (anticodon CUC) O - 20121230 -9606 100189025 TRNAR6 - - HGNC:34584 9 - transfer RNA arginine 6 (anticodon UCG) tRNA TRNAR6 transfer RNA arginine 6 (anticodon UCG) O - 20121230 -9606 100189026 TRNAQ7 - - HGNC:34585 4 - transfer RNA glutamine 7 (anticodon UUG) tRNA TRNAQ7 transfer RNA glutamine 7 (anticodon UUG) O - 20120318 -9606 100189028 TRNAI2 - - HGNC:34587 6 - transfer RNA isoleucine 2 (anticodon UAU) tRNA TRNAI2 transfer RNA isoleucine 2 (anticodon UAU) O - 20121230 -9606 100189029 TRNAC3 - - HGNC:34588 7 - transfer RNA cysteine 3 (anticodon GCA) tRNA TRNAC3 transfer RNA cysteine 3 (anticodon GCA) O - 20121230 -9606 100189030 TRNAE7 - - HGNC:34589 13 - transfer RNA glutamic acid 7 (anticodon UUC) tRNA TRNAE7 transfer RNA glutamic acid 7 (anticodon UUC) O - 20121230 -9606 100189031 TRNAE8 - - HGNC:34590 1 - transfer RNA glutamic acid 8 (anticodon UUC) tRNA TRNAE8 transfer RNA glutamic acid 8 (anticodon UUC) O - 20120318 -9606 100189032 TRNAL7 - - HGNC:34591 16 - transfer RNA leucine 7 (anticodon UAG) tRNA TRNAL7 transfer RNA leucine 7 (anticodon UAG) O - 20121230 -9606 100189033 TRNAA5 - - HGNC:34592 6 - transfer RNA alanine 5 (anticodon CGC) tRNA TRNAA5 transfer RNA alanine 5 (anticodon CGC) O - 20121230 -9606 100189034 TRNAR7 - - HGNC:34593 6 - transfer RNA arginine 7 (anticodon UCG) tRNA TRNAR7 transfer RNA arginine 7 (anticodon UCG) O - 20121230 -9606 100189035 TRNAT5 - - HGNC:34594 6 - transfer RNA threonine 5 (anticodon CGU) tRNA TRNAT5 transfer RNA threonine 5 (anticodon CGU) O - 20121230 -9606 100189036 TRNAN7 - - HGNC:34595 13 - transfer RNA asparagine 7 (anticodon GUU) tRNA TRNAN7 transfer RNA asparagine 7 (anticodon GUU) O - 20121230 -9606 100189037 TRNAS6 - - HGNC:34596 17 - transfer RNA serine 6 (anticodon CGA) tRNA TRNAS6 transfer RNA serine 6 (anticodon CGA) O - 20121230 -9606 100189038 TRNAL8 - - HGNC:34597 6 - transfer RNA leucine 8 (anticodon CAA) tRNA TRNAL8 transfer RNA leucine 8 (anticodon CAA) O - 20121230 -9606 100189039 TRNAG9 - - HGNC:34598 1 - transfer RNA glycine 9 (anticodon UCC) tRNA TRNAG9 transfer RNA glycine 9 (anticodon UCC) O - 20121230 -9606 100189040 TRNAM4 - - HGNC:34599 6 - transfer RNA methionine 4 (anticodon CAU) tRNA TRNAM4 transfer RNA methionine 4 (anticodon CAU) O - 20121230 -9606 100189041 TRNAS7 - - HGNC:34600 6 - transfer RNA serine 7 (anticodon CGA) tRNA TRNAS7 transfer RNA serine 7 (anticodon CGA) O - 20121230 -9606 100189042 TRNAA6 - - HGNC:34601 6 6p22.1 transfer RNA alanine 6 (anticodon AGC) tRNA TRNAA6 transfer RNA alanine 6 (anticodon AGC) O - 20121230 -9606 100189043 TRNAL9 - - HGNC:34602 2 - transfer RNA leucine 9 (anticodon AAG) tRNA TRNAL9 transfer RNA leucine 9 (anticodon AAG) O - 20120318 -9606 100189044 TRNAE9 - - HGNC:34603 3 - transfer RNA glutamic acid 9 (anticodon CUC) tRNA TRNAE9 transfer RNA glutamic acid 9 (anticodon CUC) O - 20120318 -9606 100189045 TRNAG10 - - HGNC:34604 1 - transfer RNA glycine 10 (anticodon CCC) tRNA TRNAG10 transfer RNA glycine 10 (anticodon CCC) O - 20121230 -9606 100189046 TRNAA7 - - HGNC:34605 6 - transfer RNA alanine 7 (anticodon AGC) tRNA TRNAA7 transfer RNA alanine 7 (anticodon AGC) O - 20121230 -9606 100189047 TRNAA8 - - HGNC:34606 6 - transfer RNA alanine 8 (anticodon AGC) tRNA TRNAA8 transfer RNA alanine 8 (anticodon AGC) O - 20121230 -9606 100189048 TRNAW2 - - HGNC:34607 6 - transfer RNA tryptophan 2 (anticodon CCA) tRNA TRNAW2 transfer RNA tryptophan 2 (anticodon CCA) O - 20121230 -9606 100189049 TRNAC4 - - HGNC:34608 7 - transfer RNA cysteine 4 (anticodon GCA) tRNA TRNAC4 transfer RNA cysteine 4 (anticodon GCA) O - 20121230 -9606 100189050 TRNAI3 - - HGNC:34609 X - transfer RNA isoleucine 3 (anticodon GAU) tRNA TRNAI3 transfer RNA isoleucine 3 (anticodon GAU) O - 20121209 -9606 100189051 TRNAK7 - - HGNC:34610 19 - transfer RNA lysine 7 (anticodon UUU) tRNA TRNAK7 transfer RNA lysine 7 (anticodon UUU) O - 20120318 -9606 100189052 TRNAC5 - - HGNC:34611 17 - transfer RNA cysteine 5 (anticodon GCA) tRNA TRNAC5 transfer RNA cysteine 5 (anticodon GCA) O - 20121230 -9606 100189053 TRNAK8 - - HGNC:34612 6 - transfer RNA lysine 8 (anticodon UUU) tRNA TRNAK8 transfer RNA lysine 8 (anticodon UUU) O - 20121230 -9606 100189054 TRNAE10 - - HGNC:34613 2 - transfer RNA glutamic acid 10 (anticodon UUC) tRNA TRNAE10 transfer RNA glutamic acid 10 (anticodon UUC) O - 20120318 -9606 100189055 TRNAS8 - - HGNC:34614 2 - transfer RNA serine 8 (anticodon UGA) tRNA TRNAS8 transfer RNA serine 8 (anticodon UGA) O - 20120318 -9606 100189056 TRNAQ8 - - HGNC:34615 1 - transfer RNA glutamine 8 (anticodon CUG) tRNA TRNAQ8 transfer RNA glutamine 8 (anticodon CUG) O - 20121230 -9606 100189057 TRNAY5 - - HGNC:34616 8 - transfer RNA tyrosine 5 (anticodon GUA) tRNA TRNAY5 transfer RNA tyrosine 5 (anticodon GUA) O - 20120318 -9606 100189058 TRNAQ9 - - HGNC:34617 9 - transfer RNA glutamine 9 (anticodon UUG) tRNA TRNAQ9 transfer RNA glutamine 9 (anticodon UUG) O - 20120318 -9606 100189059 TRNAN8 - - HGNC:34618 1 - transfer RNA asparagine 8 (anticodon GUU) tRNA TRNAN8 transfer RNA asparagine 8 (anticodon GUU) O - 20121230 -9606 100189060 TRNAA9 - - HGNC:34619 6 - transfer RNA alanine 9 (anticodon AGC) tRNA TRNAA9 transfer RNA alanine 9 (anticodon AGC) O - 20121230 -9606 100189061 TRNAD3 - - HGNC:34620 5 - transfer RNA aspartic acid 3 (anticodon GUC) tRNA TRNAD3 transfer RNA aspartic acid 3 (anticodon GUC) O - 20121230 -9606 100189062 TRNAK9 - - HGNC:34621 16 - transfer RNA lysine 9 (anticodon CUU) tRNA TRNAK9 transfer RNA lysine 9 (anticodon CUU) O - 20121230 -9606 100189063 TRNAE11 - - HGNC:34622 15 - transfer RNA glutamic acid 11 (anticodon UUC) tRNA TRNAE11 transfer RNA glutamic acid 11 (anticodon UUC) O - 20121230 -9606 100189064 TRNAG11 - - HGNC:34623 1 - transfer RNA glycine 11 (anticodon UCC) tRNA TRNAG11 transfer RNA glycine 11 (anticodon UCC) O - 20121230 -9606 100189065 TRNAH6 - - HGNC:34624 15 - transfer RNA histidine 6 (anticodon GUG) tRNA TRNAH6 transfer RNA histidine 6 (anticodon GUG) O - 20121230 -9606 100189066 TRNAA10 - - HGNC:34625 6 - transfer RNA alanine 10 (anticodon UGC) tRNA TRNAA10 transfer RNA alanine 10 (anticodon UGC) O - 20121230 -9606 100189067 TRNAL10 - - HGNC:34626 6 - transfer RNA leucine 10 (anticodon UAA) tRNA TRNAL10 transfer RNA leucine 10 (anticodon UAA) O - 20121230 -9606 100189068 TRNAE12 - - HGNC:34627 1 - transfer RNA glutamic acid 12 (anticodon UUC) tRNA TRNAE12 transfer RNA glutamic acid 12 (anticodon UUC) O - 20120318 -9606 100189069 TRNAN9 - - HGNC:34628 1 - transfer RNA asparagine 9 (anticodon GUU) tRNA TRNAN9 transfer RNA asparagine 9 (anticodon GUU) O - 20120318 -9606 100189070 TRNAS9 - - HGNC:34629 6 - transfer RNA serine 9 (anticodon AGA) tRNA TRNAS9 transfer RNA serine 9 (anticodon AGA) O - 20121230 -9606 100189071 TRNAI4 - - HGNC:34630 6 - transfer RNA isoleucine 4 (anticodon AAU) tRNA TRNAI4 transfer RNA isoleucine 4 (anticodon AAU) O - 20121230 -9606 100189072 TRNAP6 - - HGNC:34631 11 - transfer RNA proline 6 (anticodon AGG) tRNA TRNAP6 transfer RNA proline 6 (anticodon AGG) O - 20121230 -9606 100189073 TRNAV14 - - HGNC:34632 6 - transfer RNA valine 14 (anticodon CAC) tRNA TRNAV14 transfer RNA valine 14 (anticodon CAC) O - 20120318 -9606 100189074 TRNAQ10 - - HGNC:34633 6 - transfer RNA glutamine 10 (anticodon UUG) tRNA TRNAQ10 transfer RNA glutamine 10 (anticodon UUG) O - 20121230 -9606 100189075 TRNAC6 - - HGNC:34634 7 - transfer RNA cysteine 6 (anticodon GCA) tRNA TRNAC6 transfer RNA cysteine 6 (anticodon GCA) O - 20121230 -9606 100189077 TRNAS10 - - HGNC:34637 6 - transfer RNA serine 10 (anticodon AGA) tRNA TRNAS10 transfer RNA serine 10 (anticodon AGA) O - 20121230 -9606 100189078 TRNAR8 - - HGNC:34638 17 - transfer RNA arginine 8 (anticodon CCU) tRNA TRNAR8 transfer RNA arginine 8 (anticodon CCU) O - 20121230 -9606 100189079 TRNAN10 - - HGNC:34639 1 - transfer RNA asparagine 10 (anticodon GUU) tRNA TRNAN10 transfer RNA asparagine 10 (anticodon GUU) O - 20120318 -9606 100189080 TRNASUP1 - - HGNC:34640 17 17q23.2 transfer RNA suppressor 1 (anticodon UUA) tRNA TRNASUP1 transfer RNA suppressor 1 (anticodon UUA) O - 20121230 -9606 100189081 TRNAG12 - - HGNC:34641 6 - transfer RNA glycine 12 (anticodon GCC) tRNA TRNAG12 transfer RNA glycine 12 (anticodon GCC) O - 20120318 -9606 100189082 TRNAA11 - - HGNC:34642 6 - transfer RNA alanine 11 (anticodon UGC) tRNA TRNAA11 transfer RNA alanine 11 (anticodon UGC) O - 20121230 -9606 100189083 TRNAN11 - - HGNC:34643 10 - transfer RNA asparagine 11 (anticodon GUU) tRNA TRNAN11 transfer RNA asparagine 11 (anticodon GUU) O - 20121230 -9606 100189084 TRNAR9 - - HGNC:34644 6 - transfer RNA arginine 9 (anticodon CCG) tRNA TRNAR9 transfer RNA arginine 9 (anticodon CCG) O - 20121230 -9606 100189085 TRNAM5 - - HGNC:34645 6 - transfer RNA methionine 5 (anticodon CAU) tRNA TRNAM5 transfer RNA methionine 5 (anticodon CAU) O - 20121230 -9606 100189086 TRNAT6 - - HGNC:34646 16 - transfer RNA threonine 6 (anticodon CGU) tRNA TRNAT6 transfer RNA threonine 6 (anticodon CGU) O - 20121230 -9606 100189087 TRNAD4 - - HGNC:34647 1 - transfer RNA aspartic acid 4 (anticodon GUC) tRNA TRNAD4 transfer RNA aspartic acid 4 (anticodon GUC) O - 20120318 -9606 100189088 TRNAP7 - - HGNC:34648 14 - transfer RNA proline 7 (anticodon UGG) tRNA TRNAP7 transfer RNA proline 7 (anticodon UGG) O - 20121230 -9606 100189089 TRNAL11 - - HGNC:34649 16 - transfer RNA leucine 11 (anticodon CAG) tRNA TRNAL11 transfer RNA leucine 11 (anticodon CAG) O - 20121230 -9606 100189090 TRNAC7 - - HGNC:34650 17 - transfer RNA cysteine 7 (anticodon GCA) tRNA TRNAC7 transfer RNA cysteine 7 (anticodon GCA) O - 20121230 -9606 100189091 TRNAE13 - - HGNC:34651 1 - transfer RNA glutamic acid 13 (anticodon CUC) tRNA TRNAE13 transfer RNA glutamic acid 13 (anticodon CUC) O - 20121230 -9606 100189092 TRNAA12 - - HGNC:34653 6 - transfer RNA alanine 12 (anticodon AGC) tRNA TRNAA12 transfer RNA alanine 12 (anticodon AGC) O - 20121230 -9606 100189093 TRNAA13 - - HGNC:34654 6 - transfer RNA alanine 13 (anticodon AGC) tRNA TRNAA13 transfer RNA alanine 13 (anticodon AGC) O - 20121230 -9606 100189094 TRNAM6 - - HGNC:34655 6 - transfer RNA methionine 6 (anticodon CAU) tRNA TRNAM6 transfer RNA methionine 6 (anticodon CAU) O - 20121230 -9606 100189095 TRNAI5 - - HGNC:34656 6 - transfer RNA isoleucine 5 (anticodon AAU) tRNA TRNAI5 transfer RNA isoleucine 5 (anticodon AAU) O - 20121230 -9606 100189096 TRNAN12 - - HGNC:34657 1 - transfer RNA asparagine 12 (anticodon GUU) tRNA TRNAN12 transfer RNA asparagine 12 (anticodon GUU) O - 20120318 -9606 100189097 TRNAC8 - - HGNC:34658 7 - transfer RNA cysteine 8 (anticodon GCA) tRNA TRNAC8 transfer RNA cysteine 8 (anticodon GCA) O - 20121230 -9606 100189098 TRNAK11 - - HGNC:34659 1 - transfer RNA lysine 11 (anticodon UUU) tRNA TRNAK11 transfer RNA lysine 11 (anticodon UUU) O - 20121230 -9606 100189099 TRNAR10 - - HGNC:34660 6 - transfer RNA arginine 10 (anticodon ACG) tRNA TRNAR10 transfer RNA arginine 10 (anticodon ACG) O - 20121230 -9606 100189100 TRNAM7 - - HGNC:34661 6 - transfer RNA methionine 7 (anticodon CAU) tRNA TRNAM7 transfer RNA methionine 7 (anticodon CAU) O - 20120318 -9606 100189101 TRNAV15 - - HGNC:34662 6 - transfer RNA valine 15 (anticodon CAC) tRNA TRNAV15 transfer RNA valine 15 (anticodon CAC) O - 20121230 -9606 100189102 TRNAY6 - - HGNC:34663 8 - transfer RNA tyrosine 6 (anticodon GUA) tRNA TRNAY6 transfer RNA tyrosine 6 (anticodon GUA) O - 20121230 -9606 100189103 TRNAR11 - - HGNC:34664 3 - transfer RNA arginine 11 (anticodon ACG) tRNA TRNAR11 transfer RNA arginine 11 (anticodon ACG) O - 20121230 -9606 100189104 TRNAK12 - - HGNC:34665 12 - transfer RNA lysine 12 (anticodon UUU) tRNA TRNAK12 transfer RNA lysine 12 (anticodon UUU) O - 20120318 -9606 100189105 TRNAC9 - - HGNC:34666 17 - transfer RNA cysteine 9 (anticodon GCA) tRNA TRNAC9 transfer RNA cysteine 9 (anticodon GCA) O - 20121230 -9606 100189106 TRNAA14 - - HGNC:34667 6 - transfer RNA alanine 14 (anticodon AGC) tRNA TRNAA14 transfer RNA alanine 14 (anticodon AGC) O - 20121230 -9606 100189107 TRNAK13 - - HGNC:34668 14 - transfer RNA lysine 13 (anticodon CUU) tRNA TRNAK13 transfer RNA lysine 13 (anticodon CUU) O - 20121230 -9606 100189108 TRNAN13 - - HGNC:34669 1 - transfer RNA asparagine 13 (anticodon GUU) tRNA TRNAN13 transfer RNA asparagine 13 (anticodon GUU) O - 20121230 -9606 100189109 TRNAR12 - - HGNC:34670 9 - transfer RNA arginine 12 (anticodon UCU) tRNA TRNAR12 transfer RNA arginine 12 (anticodon UCU) O - 20121230 -9606 100189110 TRNAK14 - - HGNC:34671 6 - transfer RNA lysine 14 (anticodon CUU) tRNA TRNAK14 transfer RNA lysine 14 (anticodon CUU) O - 20121230 -9606 100189111 TRNAM8 - - HGNC:34673 6 - transfer RNA methionine 8 (anticodon CAU) tRNA TRNAM8 transfer RNA methionine 8 (anticodon CAU) O - 20121230 -9606 100189112 TRNAW3 - - HGNC:34674 17 - transfer RNA tryptophan 3 (anticodon CCA) tRNA TRNAW3 transfer RNA tryptophan 3 (anticodon CCA) O - 20121230 -9606 100189113 TRNAE14 - - HGNC:34675 1 - transfer RNA glutamic acid 14 (anticodon CUC) tRNA TRNAE14 transfer RNA glutamic acid 14 (anticodon CUC) O - 20121118 -9606 100189114 TRNAA15 - - HGNC:34676 6 - transfer RNA alanine 15 (anticodon UGC) tRNA TRNAA15 transfer RNA alanine 15 (anticodon UGC) O - 20121230 -9606 100189115 TRNAR14 - - HGNC:34677 11 - transfer RNA arginine 14 (anticodon UCU) tRNA TRNAR14 transfer RNA arginine 14 (anticodon UCU) O - 20121230 -9606 100189116 TRNAA16 - - HGNC:34678 1 - transfer RNA alanine 16 (anticodon AGC) tRNA TRNAA16 transfer RNA alanine 16 (anticodon AGC) O - 20120318 -9606 100189117 TRNAA17 - - HGNC:34679 14 - transfer RNA alanine 17 (anticodon AGC) tRNA TRNAA17 transfer RNA alanine 17 (anticodon AGC) O - 20121230 -9606 100189118 TRNAL12 - - HGNC:34680 6 - transfer RNA leucine 12 (anticodon AAG) tRNA TRNAL12 transfer RNA leucine 12 (anticodon AAG) O - 20121230 -9606 100189119 TRNAK15 - - HGNC:34681 16 - transfer RNA lysine 15 (anticodon CUU) tRNA TRNAK15 transfer RNA lysine 15 (anticodon CUU) O - 20121230 -9606 100189120 TRNAD5 - - HGNC:34682 1 - transfer RNA aspartic acid 5 (anticodon GUC) tRNA TRNAD5 transfer RNA aspartic acid 5 (anticodon GUC) O - 20121230 -9606 100189121 TRNAQ11 - - HGNC:34683 6 - transfer RNA glutamine 11 (anticodon CUG) tRNA TRNAQ11 transfer RNA glutamine 11 (anticodon CUG) O - 20121230 -9606 100189122 TRNAK16 - - HGNC:34684 1 - transfer RNA lysine 16 (anticodon UUU) tRNA TRNAK16 transfer RNA lysine 16 (anticodon UUU) O - 20121230 -9606 100189123 TRNAW4 - - HGNC:34685 17 - transfer RNA tryptophan 4 (anticodon CCA) tRNA TRNAW4 transfer RNA tryptophan 4 (anticodon CCA) O - 20121230 -9606 100189124 TRNAP8 - - HGNC:34686 17 - transfer RNA proline 8 (anticodon CGG) tRNA TRNAP8 transfer RNA proline 8 (anticodon CGG) O - 20121230 -9606 100189125 TRNAK17 - - HGNC:34687 16 - transfer RNA lysine 17 (anticodon UUU) tRNA TRNAK17 transfer RNA lysine 17 (anticodon UUU) O - 20121230 -9606 100189126 TRNAN14 - - HGNC:34688 1 - transfer RNA asparagine 14 (anticodon GUU) tRNA TRNAN14 transfer RNA asparagine 14 (anticodon GUU) O - 20121230 -9606 100189127 TRNAN15 - - HGNC:34689 1 - transfer RNA asparagine 15 (anticodon GUU) tRNA TRNAN15 transfer RNA asparagine 15 (anticodon GUU) O - 20121230 -9606 100189128 TRNAA18 - - HGNC:34690 6 - transfer RNA alanine 18 (anticodon AGC) tRNA TRNAA18 transfer RNA alanine 18 (anticodon AGC) O - 20121230 -9606 100189129 TRNAE15 - - HGNC:34691 14 - transfer RNA glutamic acid 15 (anticodon UUC) tRNA TRNAE15 transfer RNA glutamic acid 15 (anticodon UUC) O - 20120318 -9606 100189130 TRNAL13 - - HGNC:34692 16 - transfer RNA leucine 13 (anticodon CAG) tRNA TRNAL13 transfer RNA leucine 13 (anticodon CAG) O - 20121230 -9606 100189131 TRNAI6 - - HGNC:34693 6 - transfer RNA isoleucine 6 (anticodon UAU) tRNA TRNAI6 transfer RNA isoleucine 6 (anticodon UAU) O - 20121230 -9606 100189132 TRNAI7 - - HGNC:34694 X - transfer RNA isoleucine 7 (anticodon GAU) tRNA TRNAI7 transfer RNA isoleucine 7 (anticodon GAU) O - 20121230 -9606 100189133 TRNAR15 - - HGNC:34695 1 - transfer RNA arginine 15 (anticodon UCU) tRNA TRNAR15 transfer RNA arginine 15 (anticodon UCU) O - 20121230 -9606 100189134 TRNAD6 - - HGNC:34696 1 - transfer RNA aspartic acid 6 (anticodon GUC) tRNA TRNAD6 transfer RNA aspartic acid 6 (anticodon GUC) O - 20121209 -9606 100189135 TRNAM9 - - HGNC:34697 16 - transfer RNA methionine 9 (anticodon CAU) tRNA TRNAM9 transfer RNA methionine 9 (anticodon CAU) O - 20121230 -9606 100189136 TRNAP9 - - HGNC:34698 16 - transfer RNA proline 9 (anticodon AGG) tRNA TRNAP9 transfer RNA proline 9 (anticodon AGG) O - 20121230 -9606 100189137 TRNAF3 - - HGNC:34699 6 - transfer RNA phenylalanine 3 (anticodon GAA) tRNA TRNAF3 transfer RNA phenylalanine 3 (anticodon GAA) O - 20121230 -9606 100189138 TRNAQ12 - - HGNC:34700 6 - transfer RNA glutamine 12 (anticodon UUG) tRNA TRNAQ12 transfer RNA glutamine 12 (anticodon UUG) O - 20121230 -9606 100189139 TRNAL14 - - HGNC:34701 1 - transfer RNA leucine 14 (anticodon CAG) tRNA TRNAL14 transfer RNA leucine 14 (anticodon CAG) O - 20121230 -9606 100189140 TRNAQ13 - - HGNC:34702 1 - transfer RNA glutamine 13 (anticodon CUG) tRNA TRNAQ13 transfer RNA glutamine 13 (anticodon CUG) O - 20121230 -9606 100189141 TRNAG13 - - HGNC:34703 1 - transfer RNA glycine 13 (anticodon UCC) tRNA TRNAG13 transfer RNA glycine 13 (anticodon UCC) O - 20121230 -9606 100189142 TRNAV16 - - HGNC:34704 1 - transfer RNA valine 16 (anticodon CAC) tRNA TRNAV16 transfer RNA valine 16 (anticodon CAC) O - 20121230 -9606 100189143 TRNAT7 - - HGNC:34705 6 - transfer RNA threonine 7 (anticodon AGU) tRNA TRNAT7 transfer RNA threonine 7 (anticodon AGU) O - 20121230 -9606 100189144 TRNAC10 - - HGNC:34706 7 - transfer RNA cysteine 10 (anticodon GCA) tRNA TRNAC10 transfer RNA cysteine 10 (anticodon GCA) O - 20121230 -9606 100189145 TRNAF4 - - HGNC:34707 6 - transfer RNA phenylalanine 4 (anticodon GAA) tRNA TRNAF4 transfer RNA phenylalanine 4 (anticodon GAA) O - 20121230 -9606 100189146 TRNAC11 - - HGNC:34708 7 - transfer RNA cysteine 11 (anticodon GCA) tRNA TRNAC11 transfer RNA cysteine 11 (anticodon GCA) O - 20121230 -9606 100189148 TRNAI8 - - HGNC:34710 6 - transfer RNA isoleucine 8 (anticodon AAU) tRNA TRNAI8 transfer RNA isoleucine 8 (anticodon AAU) O - 20120318 -9606 100189149 TRNAA19 - - HGNC:34711 6 - transfer RNA alanine 19 (anticodon UGC) tRNA TRNAA19 transfer RNA alanine 19 (anticodon UGC) O - 20121230 -9606 100189150 TRNAD7 - - HGNC:34712 3 - transfer RNA aspartic acid 7 (anticodon GUC) tRNA TRNAD7 transfer RNA aspartic acid 7 (anticodon GUC) O - 20120318 -9606 100189151 TRNAL15 - - HGNC:34713 14 - transfer RNA leucine 15 (anticodon UAG) tRNA TRNAL15 transfer RNA leucine 15 (anticodon UAG) O - 20121230 -9606 100189152 TRNAS11 - - HGNC:34714 12 - transfer RNA serine 11 (anticodon CGA) tRNA TRNAS11 transfer RNA serine 11 (anticodon CGA) O - 20121230 -9606 100189153 TRNAI9 - - HGNC:34715 6 - transfer RNA isoleucine 9 (anticodon AAU) tRNA TRNAI9 transfer RNA isoleucine 9 (anticodon AAU) O - 20121230 -9606 100189154 TRNAQ14 - - HGNC:34716 1 - transfer RNA glutamine 14 (anticodon CUG) tRNA TRNAQ14 transfer RNA glutamine 14 (anticodon CUG) O - 20120318 -9606 100189155 TRNAC12 - - HGNC:34717 15 - transfer RNA cysteine 12 (anticodon GCA) tRNA TRNAC12 transfer RNA cysteine 12 (anticodon GCA) O - 20121230 -9606 100189156 TRNAA20 - - HGNC:34718 6 - transfer RNA alanine 20 (anticodon AGC) tRNA TRNAA20 transfer RNA alanine 20 (anticodon AGC) O - 20121230 -9606 100189157 TRNAS12 - - HGNC:34719 6 - transfer RNA serine 12 (anticodon GCU) tRNA TRNAS12 transfer RNA serine 12 (anticodon GCU) O - 20121230 -9606 100189158 TRNAD8 - - HGNC:34720 6 - transfer RNA aspartic acid 8 (anticodon GUC) tRNA TRNAD8 transfer RNA aspartic acid 8 (anticodon GUC) O - 20121230 -9606 100189159 TRNAS13 - - HGNC:34721 6 - transfer RNA serine 13 (anticodon GCU) tRNA TRNAS13 transfer RNA serine 13 (anticodon GCU) O - 20121230 -9606 100189160 TRNAG15 - - HGNC:34722 1 - transfer RNA glycine 15 (anticodon GCC) tRNA TRNAG15 transfer RNA glycine 15 (anticodon GCC) O - 20121230 -9606 100189161 TRNAV17 - - HGNC:34723 6 - transfer RNA valine 17 (anticodon AAC) tRNA TRNAV17 transfer RNA valine 17 (anticodon AAC) O - 20121230 -9606 100189162 TRNAY7 - - HGNC:34724 6 - transfer RNA tyrosine 7 (anticodon GUA) tRNA TRNAY7 transfer RNA tyrosine 7 (anticodon GUA) O - 20121230 -9606 100189163 TRNAG16 - - HGNC:34725 16 - transfer RNA glycine 16 (anticodon GCC) tRNA TRNAG16 transfer RNA glycine 16 (anticodon GCC) O - 20121230 -9606 100189164 TRNAL16 - - HGNC:34726 6 - transfer RNA leucine 16 (anticodon UAA) tRNA TRNAL16 transfer RNA leucine 16 (anticodon UAA) O - 20121230 -9606 100189165 TRNAN16 - - HGNC:34727 1 - transfer RNA asparagine 16 (anticodon GUU) tRNA TRNAN16 transfer RNA asparagine 16 (anticodon GUU) O - 20120318 -9606 100189166 TRNAR16 - - HGNC:34728 1 - transfer RNA arginine 16 (anticodon UCU) tRNA TRNAR16 transfer RNA arginine 16 (anticodon UCU) O - 20121230 -9606 100189167 TRNAR17 - - HGNC:34729 6 - transfer RNA arginine 17 (anticodon ACG) tRNA TRNAR17 transfer RNA arginine 17 (anticodon ACG) O - 20121230 -9606 100189168 TRNAR18 - - HGNC:34730 16 - transfer RNA arginine 18 (anticodon CCU) tRNA TRNAR18 transfer RNA arginine 18 (anticodon CCU) O - 20121230 -9606 100189169 TRNAL17 - - HGNC:34731 6 - transfer RNA leucine 17 (anticodon AAG) tRNA TRNAL17 transfer RNA leucine 17 (anticodon AAG) O - 20121230 -9606 100189170 TRNAF5 - - HGNC:34732 6 - transfer RNA phenylalanine 5 (anticodon GAA) tRNA TRNAF5 transfer RNA phenylalanine 5 (anticodon GAA) O - 20121230 -9606 100189171 TRNAW5 - - HGNC:34733 12 - transfer RNA tryptophan 5 (anticodon CCA) tRNA TRNAW5 transfer RNA tryptophan 5 (anticodon CCA) O - 20121230 -9606 100189172 TRNAP10 - - HGNC:34734 6 - transfer RNA proline 10 (anticodon CGG) tRNA TRNAP10 transfer RNA proline 10 (anticodon CGG) O - 20121230 -9606 100189173 TRNAR19 - - HGNC:34735 16 - transfer RNA arginine 19 (anticodon CCG) tRNA TRNAR19 transfer RNA arginine 19 (anticodon CCG) O - 20121230 -9606 100189174 TRNAH7 - - HGNC:34736 1 - transfer RNA histidine 7 (anticodon GUG) tRNA TRNAH7 transfer RNA histidine 7 (anticodon GUG) O - 20121230 -9606 100189175 TRNAL18 - - HGNC:34737 6 - transfer RNA leucine 18 (anticodon UAA) tRNA TRNAL18 transfer RNA leucine 18 (anticodon UAA) O - 20120318 -9606 100189176 TRNAN17 - - HGNC:34738 17 - transfer RNA asparagine 17 (anticodon GUU) tRNA TRNAN17 transfer RNA asparagine 17 (anticodon GUU) O - 20121230 -9606 100189177 TRNAC13 - - HGNC:34739 7 - transfer RNA cysteine 13 (anticodon GCA) tRNA TRNAC13 transfer RNA cysteine 13 (anticodon GCA) O - 20121230 -9606 100189178 TRNAV18 - - HGNC:34740 6 - transfer RNA valine 18 (anticodon AAC) tRNA TRNAV18 transfer RNA valine 18 (anticodon AAC) O - 20121230 -9606 100189179 TRNAC14 - - HGNC:34741 3 - transfer RNA cysteine 14 (anticodon GCA) tRNA TRNAC14 transfer RNA cysteine 14 (anticodon GCA) O - 20121230 -9606 100189180 TRNAK18 - - HGNC:34742 5 - transfer RNA lysine 18 (anticodon CUU) tRNA TRNAK18 transfer RNA lysine 18 (anticodon CUU) O - 20121230 -9606 100189181 TRNAR20 - - HGNC:34744 17 - transfer RNA arginine 20 (anticodon CCU) tRNA TRNAR20 transfer RNA arginine 20 (anticodon CCU) O - 20121230 -9606 100189182 TRNAK19 - - HGNC:34745 6 - transfer RNA lysine 19 (anticodon UUU) tRNA TRNAK19 transfer RNA lysine 19 (anticodon UUU) O - 20121230 -9606 100189183 TRNAN18 - - HGNC:34746 1 - transfer RNA asparagine 18 (anticodon GUU) tRNA TRNAN18 transfer RNA asparagine 18 (anticodon GUU) O - 20121230 -9606 100189184 TRNAS14 - - HGNC:34747 17 - transfer RNA serine 14 (anticodon AGA) tRNA TRNAS14 transfer RNA serine 14 (anticodon AGA) O - 20121230 -9606 100189185 TRNAQ15 - - HGNC:34748 6 - transfer RNA glutamine 15 (anticodon UUG) tRNA TRNAQ15 transfer RNA glutamine 15 (anticodon UUG) O - 20121230 -9606 100189186 TRNAM10 - - HGNC:34749 9 - transfer RNA methionine 10 (anticodon CAU) tRNA TRNAM10 transfer RNA methionine 10 (anticodon CAU) O - 20120318 -9606 100189187 TRNAT8 - - HGNC:34750 17 - transfer RNA threonine 8 (anticodon AGU) tRNA TRNAT8 transfer RNA threonine 8 (anticodon AGU) O - 20121230 -9606 100189188 TRNAG17 - - HGNC:34751 1 - transfer RNA glycine 17 (anticodon UCC) tRNA TRNAG17 transfer RNA glycine 17 (anticodon UCC) O - 20121230 -9606 100189189 TRNAQ16 - - HGNC:34752 6 - transfer RNA glutamine 16 (anticodon CUG) tRNA TRNAQ16 transfer RNA glutamine 16 (anticodon CUG) O - 20121230 -9606 100189190 TRNAW6 - - HGNC:34753 7 - transfer RNA tryptophan 6 (anticodon CCA) tRNA TRNAW6 transfer RNA tryptophan 6 (anticodon CCA) O - 20121230 -9606 100189191 TRNAV19 - - HGNC:34754 X - transfer RNA valine 19 (anticodon UAC) tRNA TRNAV19 transfer RNA valine 19 (anticodon UAC) O - 20121230 -9606 100189192 TRNAA21 - - HGNC:34755 6 - transfer RNA alanine 21 (anticodon AGC) tRNA TRNAA21 transfer RNA alanine 21 (anticodon AGC) O - 20120318 -9606 100189193 TRNAN19 - - HGNC:34756 1 - transfer RNA asparagine 19 (anticodon GUU) tRNA TRNAN19 transfer RNA asparagine 19 (anticodon GUU) O - 20121230 -9606 100189194 TRNAC15 - - HGNC:34757 7 - transfer RNA cysteine 15 (anticodon GCA) tRNA TRNAC15 transfer RNA cysteine 15 (anticodon GCA) O - 20121230 -9606 100189195 TRNAN20 - - HGNC:34758 19 - transfer RNA asparagine 20 (anticodon GUU) tRNA TRNAN20 transfer RNA asparagine 20 (anticodon GUU) O - 20121230 -9606 100189196 TRNAV20 - - HGNC:34759 6 - transfer RNA valine 20 (anticodon CAC) tRNA TRNAV20 transfer RNA valine 20 (anticodon CAC) O - 20121230 -9606 100189197 TRNAC16 - - HGNC:34760 4 - transfer RNA cysteine 16 (anticodon GCA) tRNA TRNAC16 transfer RNA cysteine 16 (anticodon GCA) O - 20121230 -9606 100189198 TRNAK20 - - HGNC:34761 1 - transfer RNA lysine 20 (anticodon CUU) tRNA TRNAK20 transfer RNA lysine 20 (anticodon CUU) O - 20121230 -9606 100189199 TRNAL19 - - HGNC:34762 1 - transfer RNA leucine 19 (anticodon CAA) tRNA TRNAL19 transfer RNA leucine 19 (anticodon CAA) O - 20121230 -9606 100189200 TRNAD9 - - HGNC:34763 6 - transfer RNA aspartic acid 9 (anticodon GUC) tRNA TRNAD9 transfer RNA aspartic acid 9 (anticodon GUC) O - 20121230 -9606 100189201 TRNAM11 - - HGNC:34764 8 - transfer RNA methionine 11 (anticodon CAU) tRNA TRNAM11 transfer RNA methionine 11 (anticodon CAU) O - 20121230 -9606 100189202 TRNAL20 - - HGNC:34765 6 - transfer RNA leucine 20 (anticodon AAG) tRNA TRNAL20 transfer RNA leucine 20 (anticodon AAG) O - 20121230 -9606 100189203 TRNAW7 - - HGNC:34766 17 - transfer RNA tryptophan 7 (anticodon CCA) tRNA TRNAW7 transfer RNA tryptophan 7 (anticodon CCA) O - 20121230 -9606 100189204 TRNAL21 - - HGNC:34767 5 - transfer RNA leucine 21 (anticodon CAG) tRNA TRNAL21 transfer RNA leucine 21 (anticodon CAG) O - 20120318 -9606 100189205 TRNAS15 - - HGNC:34768 6 - transfer RNA serine 15 (anticodon CGA) tRNA TRNAS15 transfer RNA serine 15 (anticodon CGA) O - 20121230 -9606 100189206 TRNAG18 - - HGNC:34769 17 - transfer RNA glycine 18 (anticodon UCC) tRNA TRNAG18 transfer RNA glycine 18 (anticodon UCC) O - 20121230 -9606 100189207 TRNAD10 - - HGNC:34770 12 - transfer RNA aspartic acid 10 (anticodon GUC) tRNA TRNAD10 transfer RNA aspartic acid 10 (anticodon GUC) O - 20121230 -9606 100189208 TRNAG19 - - HGNC:34771 2 - transfer RNA glycine 19 (anticodon GCC) tRNA TRNAG19 transfer RNA glycine 19 (anticodon GCC) O - 20121230 -9606 100189209 TRNAK21 - - HGNC:34772 16 - transfer RNA lysine 21 (anticodon CUU) tRNA TRNAK21 transfer RNA lysine 21 (anticodon CUU) O - 20121230 -9606 100189210 TRNAE16 - - HGNC:34773 1 - transfer RNA glutamic acid 16 (anticodon UUC) tRNA TRNAE16 transfer RNA glutamic acid 16 (anticodon UUC) O - 20120318 -9606 100189211 TRNAP11 - - HGNC:34774 1 - transfer RNA proline 11 (anticodon CGG) tRNA TRNAP11 transfer RNA proline 11 (anticodon CGG) O - 20121230 -9606 100189212 TRNAA22 - - HGNC:34775 6 - transfer RNA alanine 22 (anticodon AGC) tRNA TRNAA22 transfer RNA alanine 22 (anticodon AGC) O - 20120318 -9606 100189213 TRNAI11 - - HGNC:34776 6 - transfer RNA isoleucine 11 (anticodon AAU) tRNA TRNAI11 transfer RNA isoleucine 11 (anticodon AAU) O - 20121230 -9606 100189214 TRNAQ17 - - HGNC:34777 6 - transfer RNA glutamine 17 (anticodon CUG) tRNA TRNAQ17 transfer RNA glutamine 17 (anticodon CUG) O - 20121230 -9606 100189215 TRNAQ18 - - HGNC:34778 2 - transfer RNA glutamine 18 (anticodon UUG) tRNA TRNAQ18 transfer RNA glutamine 18 (anticodon UUG) O - 20120318 -9606 100189216 TRNAM12 - - HGNC:34779 6 - transfer RNA methionine 12 (anticodon CAU) tRNA TRNAM12 transfer RNA methionine 12 (anticodon CAU) O - 20121230 -9606 100189217 TRNAQ19 - - HGNC:34780 1 - transfer RNA glutamine 19 (anticodon CUG) tRNA TRNAQ19 transfer RNA glutamine 19 (anticodon CUG) O - 20120318 -9606 100189218 TRNAS16 - - HGNC:34781 6 - transfer RNA serine 16 (anticodon GCU) tRNA TRNAS16 transfer RNA serine 16 (anticodon GCU) O - 20121230 -9606 100189219 TRNAY8 - - HGNC:34782 6 - transfer RNA tyrosine 8 (anticodon GUA) tRNA TRNAY8 transfer RNA tyrosine 8 (anticodon GUA) O - 20121230 -9606 100189220 TRNAG20 - - HGNC:34783 16 - transfer RNA glycine 20 (anticodon GCC) tRNA TRNAG20 transfer RNA glycine 20 (anticodon GCC) O - 20121230 -9606 100189221 TRNAP12 - - HGNC:34784 16 - transfer RNA proline 12 (anticodon CGG) tRNA TRNAP12 transfer RNA proline 12 (anticodon CGG) O - 20121230 -9606 100189222 TRNAT9 - - HGNC:34785 17 - transfer RNA threonine 9 (anticodon AGU) tRNA TRNAT9 transfer RNA threonine 9 (anticodon AGU) O - 20121230 -9606 100189223 TRNAP13 - - HGNC:34786 6 - transfer RNA proline 13 (anticodon AGG) tRNA TRNAP13 transfer RNA proline 13 (anticodon AGG) O - 20121230 -9606 100189224 TRNAP14 - - HGNC:34787 11 - transfer RNA proline 14 (anticodon UGG) tRNA TRNAP14 transfer RNA proline 14 (anticodon UGG) O - 20121230 -9606 100189225 TRNAS17 - - HGNC:34788 6 - transfer RNA serine 17 (anticodon GCU) tRNA TRNAS17 transfer RNA serine 17 (anticodon GCU) O - 20121230 -9606 100189226 TRNAM13 - - HGNC:34789 16 - transfer RNA methionine 13 (anticodon CAU) tRNA TRNAM13 transfer RNA methionine 13 (anticodon CAU) O - 20121230 -9606 100189227 TRNAV21 - - HGNC:34790 6 - transfer RNA valine 21 (anticodon CAC) tRNA TRNAV21 transfer RNA valine 21 (anticodon CAC) O - 20121230 -9606 100189228 TRNAV22 - - HGNC:34791 1 - transfer RNA valine 22 (anticodon CAC) tRNA TRNAV22 transfer RNA valine 22 (anticodon CAC) O - 20121230 -9606 100189229 TRNAS18 - - HGNC:34792 15 - transfer RNA serine 18 (anticodon GCU) tRNA TRNAS18 transfer RNA serine 18 (anticodon GCU) O - 20121230 -9606 100189230 TRNAG21 - - HGNC:34793 1 - transfer RNA glycine 21 (anticodon GCC) tRNA TRNAG21 transfer RNA glycine 21 (anticodon GCC) O - 20121230 -9606 100189231 TRNAG22 - - HGNC:34794 2 - transfer RNA glycine 22 (anticodon CCC) tRNA TRNAG22 transfer RNA glycine 22 (anticodon CCC) O - 20121230 -9606 100189232 TRNAA23 - - HGNC:34795 12 - transfer RNA alanine 23 (anticodon UGC) tRNA TRNAA23 transfer RNA alanine 23 (anticodon UGC) O - 20121230 -9606 100189233 TRNAN21 - - HGNC:34796 1 - transfer RNA asparagine 21 (anticodon GUU) tRNA TRNAN21 transfer RNA asparagine 21 (anticodon GUU) O - 20120318 -9606 100189234 TRNAK22 - - HGNC:34797 6 - transfer RNA lysine 22 (anticodon UUU) tRNA TRNAK22 transfer RNA lysine 22 (anticodon UUU) O - 20121230 -9606 100189235 TRNAD11 - - HGNC:34798 1 - transfer RNA aspartic acid 11 (anticodon GUC) tRNA TRNAD11 transfer RNA aspartic acid 11 (anticodon GUC) O - 20121230 -9606 100189236 TRNAE17 - - HGNC:34799 8 - transfer RNA glutamic acid 17 (anticodon CUC) tRNA TRNAE17 transfer RNA glutamic acid 17 (anticodon CUC) O - 20120318 -9606 100189237 TRNAL22 - - HGNC:34800 6 - transfer RNA leucine 22 (anticodon CAA) tRNA TRNAL22 transfer RNA leucine 22 (anticodon CAA) O - 20121230 -9606 100189238 TRNAK23 - - HGNC:34801 11 - transfer RNA lysine 23 (anticodon UUU) tRNA TRNAK23 transfer RNA lysine 23 (anticodon UUU) O - 20121230 -9606 100189239 TRNAD12 - - HGNC:34802 12 - transfer RNA aspartic acid 12 (anticodon GUC) tRNA TRNAD12 transfer RNA aspartic acid 12 (anticodon GUC) O - 20121230 -9606 100189240 TRNAL23 - - HGNC:34803 11 - transfer RNA leucine 23 (anticodon UAA) tRNA TRNAL23 transfer RNA leucine 23 (anticodon UAA) O - 20121230 -9606 100189242 TRNAH8 - - HGNC:34805 3 - transfer RNA histidine 8 (anticodon GUG) tRNA TRNAH8 transfer RNA histidine 8 (anticodon GUG) O - 20120318 -9606 100189243 TRNAR21 - - HGNC:34806 14 - transfer RNA arginine 21 (anticodon ACG) tRNA TRNAR21 transfer RNA arginine 21 (anticodon ACG) O - 20121230 -9606 100189244 TRNAK24 - - HGNC:34807 16 - transfer RNA lysine 24 (anticodon CUU) tRNA TRNAK24 transfer RNA lysine 24 (anticodon CUU) O - 20121230 -9606 100189245 TRNAT10 - - HGNC:34808 17 - transfer RNA threonine 10 (anticodon CGU) tRNA TRNAT10 transfer RNA threonine 10 (anticodon CGU) O - 20121230 -9606 100189246 TRNAA24 - - HGNC:34809 6 - transfer RNA alanine 24 (anticodon AGC) tRNA TRNAA24 transfer RNA alanine 24 (anticodon AGC) O - 20120318 -9606 100189247 TRNAS19 - - HGNC:34810 6 - transfer RNA serine 19 (anticodon AGA) tRNA TRNAS19 transfer RNA serine 19 (anticodon AGA) O - 20121230 -9606 100189248 TRNAS20 - - HGNC:34811 8 - transfer RNA serine 20 (anticodon AGA) tRNA TRNAS20 transfer RNA serine 20 (anticodon AGA) O - 20121230 -9606 100189249 TRNAI12 - - HGNC:34812 6 - transfer RNA isoleucine 12 (anticodon AAU) tRNA TRNAI12 transfer RNA isoleucine 12 (anticodon AAU) O - 20121230 -9606 100189250 TRNAC18 - - HGNC:34813 3 - transfer RNA cysteine 18 (anticodon GCA) tRNA TRNAC18 transfer RNA cysteine 18 (anticodon GCA) O - 20121230 -9606 100189251 TRNAF6 - - HGNC:34814 13 - transfer RNA phenylalanine 6 (anticodon GAA) tRNA TRNAF6 transfer RNA phenylalanine 6 (anticodon GAA) O - 20121230 -9606 100189252 TRNAG23 - - HGNC:34815 1 - transfer RNA glycine 23 (anticodon GCC) tRNA TRNAG23 transfer RNA glycine 23 (anticodon GCC) O - 20121230 -9606 100189253 TRNAY9 - - HGNC:34816 2 - transfer RNA tyrosine 9 (anticodon AUA) tRNA TRNAY9 transfer RNA tyrosine 9 (anticodon AUA) O - 20121209 -9606 100189254 TRNAF7 - - HGNC:34817 6 - transfer RNA phenylalanine 7 (anticodon GAA) tRNA TRNAF7 transfer RNA phenylalanine 7 (anticodon GAA) O - 20121230 -9606 100189255 TRNAM14 - - HGNC:34818 17 - transfer RNA methionine 14 (anticodon CAU) tRNA TRNAM14 transfer RNA methionine 14 (anticodon CAU) O - 20121230 -9606 100189256 TRNAA25 - - HGNC:34819 11 - transfer RNA alanine 25 (anticodon UGC) tRNA TRNAA25 transfer RNA alanine 25 (anticodon UGC) O - 20120318 -9606 100189257 TRNAN22 - - HGNC:34820 1 - transfer RNA asparagine 22 (anticodon GUU) tRNA TRNAN22 transfer RNA asparagine 22 (anticodon GUU) O - 20121230 -9606 100189258 TRNAT11 - - HGNC:34821 6 - transfer RNA threonine 11 (anticodon CGU) tRNA TRNAT11 transfer RNA threonine 11 (anticodon CGU) O - 20120318 -9606 100189259 TRNAE18 - - HGNC:34822 1 - transfer RNA glutamic acid 18 (anticodon CUC) tRNA TRNAE18 transfer RNA glutamic acid 18 (anticodon CUC) O - 20121230 -9606 100189260 TRNAG24 - - HGNC:34823 1 - transfer RNA glycine 24 (anticodon UCC) tRNA TRNAG24 transfer RNA glycine 24 (anticodon UCC) O - 20121230 -9606 100189261 TRNAQ20 - - HGNC:34824 1 - transfer RNA glutamine 20 (anticodon CUG) tRNA TRNAQ20 transfer RNA glutamine 20 (anticodon CUG) O - 20121230 -9606 100189262 TRNAF8 - - HGNC:34825 6 - transfer RNA phenylalanine 8 (anticodon GAA) tRNA TRNAF8 transfer RNA phenylalanine 8 (anticodon GAA) O - 20121230 -9606 100189263 TRNAT12 - - HGNC:34826 14 - transfer RNA threonine 12 (anticodon UGU) tRNA TRNAT12 transfer RNA threonine 12 (anticodon UGU) O - 20121230 -9606 100189264 TRNAR22 - - HGNC:34827 15 - transfer RNA arginine 22 (anticodon UCG) tRNA TRNAR22 transfer RNA arginine 22 (anticodon UCG) O - 20121230 -9606 100189265 TRNAI13 - - HGNC:34828 2 - transfer RNA isoleucine 13 (anticodon UAU) tRNA TRNAI13 transfer RNA isoleucine 13 (anticodon UAU) O - 20121230 -9606 100189266 TRNAN23 - - HGNC:34829 1 - transfer RNA asparagine 23 (anticodon GUU) tRNA TRNAN23 transfer RNA asparagine 23 (anticodon GUU) O - 20120318 -9606 100189267 TRNAC19 - - HGNC:34830 7 - transfer RNA cysteine 19 (anticodon GCA) tRNA TRNAC19 transfer RNA cysteine 19 (anticodon GCA) O - 20121230 -9606 100189268 TRNAQ21 - - HGNC:34831 6 - transfer RNA glutamine 21 (anticodon CUG) tRNA TRNAQ21 transfer RNA glutamine 21 (anticodon CUG) O - 20121230 -9606 100189269 TRNAE19 - - HGNC:34832 6 - transfer RNA glutamic acid 19 (anticodon CUC) tRNA TRNAE19 transfer RNA glutamic acid 19 (anticodon CUC) O - 20121230 -9606 100189270 TRNAR23 - - HGNC:34833 16 - transfer RNA arginine 23 (anticodon CCU) tRNA TRNAR23 transfer RNA arginine 23 (anticodon CCU) O - 20121230 -9606 100189271 TRNAN24 - - HGNC:34834 1 - transfer RNA asparagine 24 (anticodon GUU) tRNA TRNAN24 transfer RNA asparagine 24 (anticodon GUU) O - 20120318 -9606 100189272 TRNAY10 - - HGNC:34835 6 - transfer RNA tyrosine 10 (anticodon GUA) tRNA TRNAY10 transfer RNA tyrosine 10 (anticodon GUA) O - 20121230 -9606 100189273 TRNAL24 - - HGNC:34836 5 - transfer RNA leucine 24 (anticodon AAG) tRNA TRNAL24 transfer RNA leucine 24 (anticodon AAG) O - 20121209 -9606 100189274 TRNAG25 - - HGNC:34838 1 - transfer RNA glycine 25 (anticodon GCC) tRNA TRNAG25 transfer RNA glycine 25 (anticodon GCC) O - 20121230 -9606 100189275 TRNAI15 - - HGNC:34839 14 - transfer RNA isoleucine 15 (anticodon AAU) tRNA TRNAI15 transfer RNA isoleucine 15 (anticodon AAU) O - 20121230 -9606 100189276 TRNAP15 - - HGNC:34840 7 - transfer RNA proline 15 (anticodon AGG) tRNA TRNAP15 transfer RNA proline 15 (anticodon AGG) O - 20121230 -9606 100189277 TRNAG26 - - HGNC:34841 17 - transfer RNA glycine 26 (anticodon CCC) tRNA TRNAG26 transfer RNA glycine 26 (anticodon CCC) O - 20121230 -9606 100189278 TRNAY11 - - HGNC:34842 7 - transfer RNA tyrosine 11 (anticodon GUA) tRNA TRNAY11 transfer RNA tyrosine 11 (anticodon GUA) O - 20120318 -9606 100189279 TRNAS21 - - HGNC:34845 10 - transfer RNA serine 21 (anticodon UGA) tRNA TRNAS21 transfer RNA serine 21 (anticodon UGA) O - 20121230 -9606 100189280 TRNAA26 - - HGNC:34846 5 - transfer RNA alanine 26 (anticodon UGC) tRNA TRNAA26 transfer RNA alanine 26 (anticodon UGC) O - 20121230 -9606 100189281 TRNAP16 - - HGNC:34847 16 - transfer RNA proline 16 (anticodon UGG) tRNA TRNAP16 transfer RNA proline 16 (anticodon UGG) O - 20121230 -9606 100189282 TRNAK26 - - HGNC:34848 16 - transfer RNA lysine 26 (anticodon CUU) tRNA TRNAK26 transfer RNA lysine 26 (anticodon CUU) O - 20121230 -9606 100189283 TRNAV23 - - HGNC:34849 11 - transfer RNA valine 23 (anticodon UAC) tRNA TRNAV23 transfer RNA valine 23 (anticodon UAC) O - 20121230 -9606 100189284 TRNAG27 - - HGNC:34850 21 - transfer RNA glycine 27 (anticodon GCC) tRNA TRNAG27 transfer RNA glycine 27 (anticodon GCC) O - 20121230 -9606 100189285 TRNAS22 - - HGNC:34851 11 - transfer RNA serine 22 (anticodon GCU) tRNA TRNAS22 transfer RNA serine 22 (anticodon GCU) O - 20121230 -9606 100189286 TRNAP17 - - HGNC:34852 14 - transfer RNA proline 17 (anticodon UGG) tRNA TRNAP17 transfer RNA proline 17 (anticodon UGG) O - 20121230 -9606 100189287 TRNAQ22 - - HGNC:34853 6 - transfer RNA glutamine 22 (anticodon CUG) tRNA TRNAQ22 transfer RNA glutamine 22 (anticodon CUG) O - 20121230 -9606 100189288 TRNAL26 - - HGNC:34854 6 - transfer RNA leucine 26 (anticodon CAG) tRNA TRNAL26 transfer RNA leucine 26 (anticodon CAG) O - 20121230 -9606 100189289 TRNAC20 - - HGNC:34855 7 - transfer RNA cysteine 20 (anticodon GCA) tRNA TRNAC20 transfer RNA cysteine 20 (anticodon GCA) O - 20121230 -9606 100189290 TRNAD13 - - HGNC:34856 1 - transfer RNA aspartic acid 13 (anticodon GUC) tRNA TRNAD13 transfer RNA aspartic acid 13 (anticodon GUC) O - 20121230 -9606 100189291 TRNAL27 - - HGNC:34857 16 - transfer RNA leucine 27 (anticodon AAG) tRNA TRNAL27 transfer RNA leucine 27 (anticodon AAG) O - 20121230 -9606 100189292 TRNAD14 - - HGNC:34858 6 - transfer RNA aspartic acid 14 (anticodon GUC) tRNA TRNAD14 transfer RNA aspartic acid 14 (anticodon GUC) O - 20121230 -9606 100189293 TRNAF9 - - HGNC:34859 6 - transfer RNA phenylalanine 9 (anticodon GAA) tRNA TRNAF9 transfer RNA phenylalanine 9 (anticodon GAA) O - 20121230 -9606 100189294 TRNAK27 - - HGNC:34860 11 - transfer RNA lysine 27 (anticodon UUU) tRNA TRNAK27 transfer RNA lysine 27 (anticodon UUU) O - 20121230 -9606 100189295 TRNAA27 - - HGNC:34861 6 - transfer RNA alanine 27 (anticodon AGC) tRNA TRNAA27 transfer RNA alanine 27 (anticodon AGC) O - 20121230 -9606 100189296 TRNAP18 - - HGNC:34862 16 - transfer RNA proline 18 (anticodon AGG) tRNA TRNAP18 transfer RNA proline 18 (anticodon AGG) O - 20121230 -9606 100189297 TRNAM15 - - HGNC:34863 6 - transfer RNA methionine 15 (anticodon CAU) tRNA TRNAM15 transfer RNA methionine 15 (anticodon CAU) O - 20121230 -9606 100189298 TRNAG28 - - HGNC:34864 1 - transfer RNA glycine 28 (anticodon CCC) tRNA TRNAG28 transfer RNA glycine 28 (anticodon CCC) O - 20121230 -9606 100189299 TRNAA28 - - HGNC:34865 6 - transfer RNA alanine 28 (anticodon AGC) tRNA TRNAA28 transfer RNA alanine 28 (anticodon AGC) O - 20121230 -9606 100189300 TRNAT13 - - HGNC:34866 6 - transfer RNA threonine 13 (anticodon CGU) tRNA TRNAT13 transfer RNA threonine 13 (anticodon CGU) O - 20121230 -9606 100189301 TRNAL28 - - HGNC:34867 6 - transfer RNA leucine 28 (anticodon CAA) tRNA TRNAL28 transfer RNA leucine 28 (anticodon CAA) O - 20121230 -9606 100189302 TRNAQ23 - - HGNC:34868 20 - transfer RNA glutamine 23 (anticodon CUG) tRNA TRNAQ23 transfer RNA glutamine 23 (anticodon CUG) O - 20120318 -9606 100189303 TRNAM16 - - HGNC:34869 6 - transfer RNA methionine 16 (anticodon CAU) tRNA TRNAM16 transfer RNA methionine 16 (anticodon CAU) O - 20121230 -9606 100189304 TRNAN25 - - HGNC:34870 1 - transfer RNA asparagine 25 (anticodon GUU) tRNA TRNAN25 transfer RNA asparagine 25 (anticodon GUU) O - 20121230 -9606 100189305 TRNAC21 - - HGNC:34871 7 - transfer RNA cysteine 21 (anticodon GCA) tRNA TRNAC21 transfer RNA cysteine 21 (anticodon GCA) O - 20121230 -9606 100189306 TRNAF10 - - HGNC:34873 19 - transfer RNA phenylalanine 10 (anticodon GAA) tRNA TRNAF10 transfer RNA phenylalanine 10 (anticodon GAA) O - 20121230 -9606 100189307 TRNAH9 - - HGNC:34874 1 - transfer RNA histidine 9 (anticodon GUG) tRNA TRNAH9 transfer RNA histidine 9 (anticodon GUG) O - 20121230 -9606 100189308 TRNAA29 - - HGNC:34875 6 - transfer RNA alanine 29 (anticodon CGC) tRNA TRNAA29 transfer RNA alanine 29 (anticodon CGC) O - 20121230 -9606 100189309 TRNAW8 - - HGNC:34876 9 - transfer RNA tryptophan 8 (anticodon CCA) tRNA TRNAW8 transfer RNA tryptophan 8 (anticodon CCA) O - 20120318 -9606 100189310 TRNAI17 - - HGNC:34877 6 - transfer RNA isoleucine 17 (anticodon AAU) tRNA TRNAI17 transfer RNA isoleucine 17 (anticodon AAU) O - 20121230 -9606 100189311 TRNAK28 - - HGNC:34878 19 - transfer RNA lysine 28 (anticodon CUU) tRNA TRNAK28 transfer RNA lysine 28 (anticodon CUU) O - 20120318 -9606 100189312 TRNAA30 - - HGNC:34879 6 - transfer RNA alanine 30 (anticodon AGC) tRNA TRNAA30 transfer RNA alanine 30 (anticodon AGC) O - 20121230 -9606 100189313 TRNAL29 - - HGNC:34880 6 - transfer RNA leucine 29 (anticodon UAA) tRNA TRNAL29 transfer RNA leucine 29 (anticodon UAA) O - 20121230 -9606 100189314 TRNAG29 - - HGNC:34881 6 - transfer RNA glycine 29 (anticodon GCC) tRNA TRNAG29 transfer RNA glycine 29 (anticodon GCC) O - 20121230 -9606 100189315 TRNAM17 - - HGNC:34882 6 - transfer RNA methionine 17 (anticodon CAU) tRNA TRNAM17 transfer RNA methionine 17 (anticodon CAU) O - 20121230 -9606 100189316 TRNAL30 - - HGNC:34883 1 - transfer RNA leucine 30 (anticodon CAG) tRNA TRNAL30 transfer RNA leucine 30 (anticodon CAG) O - 20121230 -9606 100189317 TRNAQ24 - - HGNC:34884 15 - transfer RNA glutamine 24 (anticodon CUG) tRNA TRNAQ24 transfer RNA glutamine 24 (anticodon CUG) O - 20121230 -9606 100189318 TRNAV24 - - HGNC:34885 3 - transfer RNA valine 24 (anticodon AAC) tRNA TRNAV24 transfer RNA valine 24 (anticodon AAC) O - 20121230 -9606 100189319 TRNAT14 - - HGNC:34886 6 - transfer RNA threonine 14 (anticodon AGU) tRNA TRNAT14 transfer RNA threonine 14 (anticodon AGU) O - 20121230 -9606 100189320 TRNAN26 - - HGNC:34887 1 - transfer RNA asparagine 26 (anticodon AUU) tRNA TRNAN26 transfer RNA asparagine 26 (anticodon AUU) O - 20120318 -9606 100189321 TRNAQ25 - - HGNC:34888 6 - transfer RNA glutamine 25 (anticodon UUG) tRNA TRNAQ25 transfer RNA glutamine 25 (anticodon UUG) O - 20121230 -9606 100189322 TRNAQ26 - - HGNC:34889 1 - transfer RNA glutamine 26 (anticodon CUG) tRNA TRNAQ26 transfer RNA glutamine 26 (anticodon CUG) O - 20120318 -9606 100189323 TRNAN27 - - HGNC:34890 1 - transfer RNA asparagine 27 (anticodon GUU) tRNA TRNAN27 transfer RNA asparagine 27 (anticodon GUU) O - 20121230 -9606 100189324 TRNAI18 - - HGNC:34891 19 - transfer RNA isoleucine 18 (anticodon UAU) tRNA TRNAI18 transfer RNA isoleucine 18 (anticodon UAU) O - 20121230 -9606 100189325 TRNAL31 - - HGNC:34892 4 - transfer RNA leucine 31 (anticodon UAA) tRNA TRNAL31 transfer RNA leucine 31 (anticodon UAA) O - 20120318 -9606 100189326 TRNAV25 - - HGNC:34893 1 - transfer RNA valine 25 (anticodon CAC) tRNA TRNAV25 transfer RNA valine 25 (anticodon CAC) O - 20121230 -9606 100189327 TRNAA31 - - HGNC:34894 6 - transfer RNA alanine 31 (anticodon AGC) tRNA TRNAA31 transfer RNA alanine 31 (anticodon AGC) O - 20120318 -9606 100189328 TRNAL32 - - HGNC:34895 5 - transfer RNA leucine 32 (anticodon AAG) tRNA TRNAL32 transfer RNA leucine 32 (anticodon AAG) O - 20121230 -9606 100189329 TRNAQ27 - - HGNC:34896 6 - transfer RNA glutamine 27 (anticodon CUG) tRNA TRNAQ27 transfer RNA glutamine 27 (anticodon CUG) O - 20121230 -9606 100189330 TRNASUP2 - - HGNC:34897 21 - transfer RNA suppressor 2 (anticodon UUA) tRNA TRNASUP2 transfer RNA suppressor 2 (anticodon UUA) O - 20120318 -9606 100189331 TRNAS23 - - HGNC:34898 17 - transfer RNA serine 23 (anticodon GCU) tRNA TRNAS23 transfer RNA serine 23 (anticodon GCU) O - 20121230 -9606 100189332 TRNAK29 - - HGNC:34900 6 - transfer RNA lysine 29 (anticodon UUU) tRNA TRNAK29 transfer RNA lysine 29 (anticodon UUU) O - 20121230 -9606 100189333 TRNAE20 - - HGNC:34901 13 - transfer RNA glutamic acid 20 (anticodon UUC) tRNA TRNAE20 transfer RNA glutamic acid 20 (anticodon UUC) O - 20121230 -9606 100189334 TRNAH10 - - HGNC:34902 1 - transfer RNA histidine 10 (anticodon GUG) tRNA TRNAH10 transfer RNA histidine 10 (anticodon GUG) O - 20121230 -9606 100189335 TRNAP19 - - HGNC:34903 16 - transfer RNA proline 19 (anticodon UGG) tRNA TRNAP19 transfer RNA proline 19 (anticodon UGG) O - 20121230 -9606 100189336 TRNAI20 - - HGNC:34904 6 - transfer RNA isoleucine 20 (anticodon AAU) tRNA TRNAI20 transfer RNA isoleucine 20 (anticodon AAU) O - 20121230 -9606 100189337 TRNAY12 - - HGNC:34905 6 - transfer RNA tyrosine 12 (anticodon GUA) tRNA TRNAY12 transfer RNA tyrosine 12 (anticodon GUA) O - 20121230 -9606 100189338 TRNAN28 - - HGNC:34906 1 - transfer RNA asparagine 28 (anticodon GUU) tRNA TRNAN28 transfer RNA asparagine 28 (anticodon GUU) O - 20120318 -9606 100189339 TRNAA32 - - HGNC:34907 12 - transfer RNA alanine 32 (anticodon UGC) tRNA TRNAA32 transfer RNA alanine 32 (anticodon UGC) O - 20121230 -9606 100189340 TRNAT15 - - HGNC:34908 6 - transfer RNA threonine 15 (anticodon AGU) tRNA TRNAT15 transfer RNA threonine 15 (anticodon AGU) O - 20121230 -9606 100189341 TRNAA33 - - HGNC:34909 6 - transfer RNA alanine 33 (anticodon AGC) tRNA TRNAA33 transfer RNA alanine 33 (anticodon AGC) O - 20120318 -9606 100189342 TRNAV26 - - HGNC:34910 10 - transfer RNA valine 26 (anticodon UAC) tRNA TRNAV26 transfer RNA valine 26 (anticodon UAC) O - 20121230 -9606 100189343 TRNAD15 - - HGNC:34911 12 - transfer RNA aspartic acid 15 (anticodon GUC) tRNA TRNAD15 transfer RNA aspartic acid 15 (anticodon GUC) O - 20121230 -9606 100189344 TRNAT16 - - HGNC:34912 6 - transfer RNA threonine 16 (anticodon UGU) tRNA TRNAT16 transfer RNA threonine 16 (anticodon UGU) O - 20121230 -9606 100189345 TRNAM18 - - HGNC:34913 6 - transfer RNA methionine 18 (anticodon CAU) tRNA TRNAM18 transfer RNA methionine 18 (anticodon CAU) O - 20121230 -9606 100189346 TRNAA34 - - HGNC:34914 6 - transfer RNA alanine 34 (anticodon AGC) tRNA TRNAA34 transfer RNA alanine 34 (anticodon AGC) O - 20121230 -9606 100189347 TRNAD16 - - HGNC:34915 12 - transfer RNA aspartic acid 16 (anticodon GUC) tRNA TRNAD16 transfer RNA aspartic acid 16 (anticodon GUC) O - 20121230 -9606 100189348 TRNAI21 - - HGNC:34916 6 - transfer RNA isoleucine 21 (anticodon UAU) tRNA TRNAI21 transfer RNA isoleucine 21 (anticodon UAU) O - 20121230 -9606 100189349 TRNAL33 - - HGNC:34917 3 - transfer RNA leucine 33 (anticodon AAG) tRNA TRNAL33 transfer RNA leucine 33 (anticodon AAG) O - 20120318 -9606 100189350 TRNAH11 - - HGNC:34918 1 - transfer RNA histidine 11 (anticodon GUG) tRNA TRNAH11 transfer RNA histidine 11 (anticodon GUG) O - 20121209 -9606 100189351 TRNAQ28 - - HGNC:34919 16 - transfer RNA glutamine 28 (anticodon CUG) tRNA TRNAQ28 transfer RNA glutamine 28 (anticodon CUG) O - 20120318 -9606 100189352 TRNAS24 - - HGNC:34920 6 - transfer RNA serine 24 (anticodon AGA) tRNA TRNAS24 transfer RNA serine 24 (anticodon AGA) O - 20121230 -9606 100189353 TRNAA35 - - HGNC:34921 6 - transfer RNA alanine 35 (anticodon AGC) tRNA TRNAA35 transfer RNA alanine 35 (anticodon AGC) O - 20120318 -9606 100189354 TRNAM19 - - HGNC:34922 6 - transfer RNA methionine 19 (anticodon CAU) tRNA TRNAM19 transfer RNA methionine 19 (anticodon CAU) O - 20121230 -9606 100189355 TRNAC22 - - HGNC:34923 7 - transfer RNA cysteine 22 (anticodon GCA) tRNA TRNAC22 transfer RNA cysteine 22 (anticodon GCA) O - 20121230 -9606 100189356 TRNAN29 - - HGNC:34924 1 - transfer RNA asparagine 29 (anticodon GUU) tRNA TRNAN29 transfer RNA asparagine 29 (anticodon GUU) O - 20121230 -9606 100189357 TRNAC23 - - HGNC:34925 7 - transfer RNA cysteine 23 (anticodon GCA) tRNA TRNAC23 transfer RNA cysteine 23 (anticodon GCA) O - 20121230 -9606 100189358 TRNAA36 - - HGNC:34926 6 - transfer RNA alanine 36 (anticodon AGC) tRNA TRNAA36 transfer RNA alanine 36 (anticodon AGC) O - 20121230 -9606 100189359 TRNAC24 - - HGNC:34927 14 - transfer RNA cysteine 24 (anticodon GCA) tRNA TRNAC24 transfer RNA cysteine 24 (anticodon GCA) O - 20121230 -9606 100189360 TRNAT17 - - HGNC:34928 6 - transfer RNA threonine 17 (anticodon CGU) tRNA TRNAT17 transfer RNA threonine 17 (anticodon CGU) O - 20121230 -9606 100189361 TRNAP20 - - HGNC:34929 16 - transfer RNA proline 20 (anticodon AGG) tRNA TRNAP20 transfer RNA proline 20 (anticodon AGG) O - 20120318 -9606 100189362 TRNAL34 - - HGNC:34930 5 - transfer RNA leucine 34 (anticodon AAG) tRNA TRNAL34 transfer RNA leucine 34 (anticodon AAG) O - 20121230 -9606 100189363 TRNAV27 - - HGNC:34931 6 - transfer RNA valine 27 (anticodon CAC) tRNA TRNAV27 transfer RNA valine 27 (anticodon CAC) O - 20121230 -9606 100189364 TRNAL35 - - HGNC:34932 1 - transfer RNA leucine 35 (anticodon CAG) tRNA TRNAL35 transfer RNA leucine 35 (anticodon CAG) O - 20121230 -9606 100189365 TRNAR24 - - HGNC:34933 6 - transfer RNA arginine 24 (anticodon CCG) tRNA TRNAR24 transfer RNA arginine 24 (anticodon CCG) O - 20121230 -9606 100189366 TRNAG30 - - HGNC:34934 1 - transfer RNA glycine 30 (anticodon GCC) tRNA TRNAG30 transfer RNA glycine 30 (anticodon GCC) O - 20121209 -9606 100189367 TRNAK30 - - HGNC:34935 19 - transfer RNA lysine 30 (anticodon CUU) tRNA TRNAK30 transfer RNA lysine 30 (anticodon CUU) O - 20120318 -9606 100189368 TRNAV28 - - HGNC:34936 6 - transfer RNA valine 28 (anticodon CAC) tRNA TRNAV28 transfer RNA valine 28 (anticodon CAC) O - 20121230 -9606 100189369 TRNAA37 - - HGNC:34937 6 - transfer RNA alanine 37 (anticodon AGC) tRNA TRNAA37 transfer RNA alanine 37 (anticodon AGC) O - 20121230 -9606 100189370 TRNAL36 - - HGNC:34938 11 - transfer RNA leucine 36 (anticodon CAA) tRNA TRNAL36 transfer RNA leucine 36 (anticodon CAA) O - 20121230 -9606 100189371 TRNAR25 - - HGNC:34939 17 - transfer RNA arginine 25 (anticodon UCG) tRNA TRNAR25 transfer RNA arginine 25 (anticodon UCG) O - 20121230 -9606 100189372 TRNAI22 - - HGNC:34940 6 - transfer RNA isoleucine 22 (anticodon AAU) tRNA TRNAI22 transfer RNA isoleucine 22 (anticodon AAU) O - 20121230 -9606 100189373 TRNAV29 - - HGNC:34941 1 - transfer RNA valine 29 (anticodon CAC) tRNA TRNAV29 transfer RNA valine 29 (anticodon CAC) O - 20121230 -9606 100189374 TRNAT18 - - HGNC:34942 6 - transfer RNA threonine 18 (anticodon AGU) tRNA TRNAT18 transfer RNA threonine 18 (anticodon AGU) O - 20121230 -9606 100189375 TRNAC25 - - HGNC:34943 7 - transfer RNA cysteine 25 (anticodon GCA) tRNA TRNAC25 transfer RNA cysteine 25 (anticodon GCA) O - 20121230 -9606 100189376 TRNAC26 - - HGNC:34944 7 - transfer RNA cysteine 26 (anticodon GCA) tRNA TRNAC26 transfer RNA cysteine 26 (anticodon GCA) O - 20121230 -9606 100189377 TRNAL37 - - HGNC:34945 X Xp11.21 transfer RNA leucine 37 (anticodon UAA) tRNA TRNAL37 transfer RNA leucine 37 (anticodon UAA) O - 20120318 -9606 100189378 TRNAT19 - - HGNC:34946 1 - transfer RNA threonine 19 (anticodon UGU) tRNA TRNAT19 transfer RNA threonine 19 (anticodon UGU) O - 20121230 -9606 100189379 TRNAC27 - - HGNC:34947 7 - transfer RNA cysteine 27 (anticodon GCA) tRNA TRNAC27 transfer RNA cysteine 27 (anticodon GCA) O - 20121230 -9606 100189380 TRNAG31 - - HGNC:34948 1 - transfer RNA glycine 31 (anticodon GCC) tRNA TRNAG31 transfer RNA glycine 31 (anticodon GCC) O - 20121230 -9606 100189381 TRNAN30 - - HGNC:34949 1 - transfer RNA asparagine 30 (anticodon GUU) tRNA TRNAN30 transfer RNA asparagine 30 (anticodon GUU) O - 20120318 -9606 100189382 TRNAS25 - - HGNC:34950 6 - transfer RNA serine 25 (anticodon AGA) tRNA TRNAS25 transfer RNA serine 25 (anticodon AGA) O - 20121230 -9606 100189383 TRNAD17 - - HGNC:34951 17 - transfer RNA aspartic acid 17 (anticodon GUC) tRNA TRNAD17 transfer RNA aspartic acid 17 (anticodon GUC) O - 20121230 -9606 100189384 TRNAE21 - - HGNC:34952 1 - transfer RNA glutamic acid 21 (anticodon CUC) tRNA TRNAE21 transfer RNA glutamic acid 21 (anticodon CUC) O - 20121230 -9606 100189385 TRNAE22 - - HGNC:34953 1 - transfer RNA glutamic acid 22 (anticodon CUC) tRNA TRNAE22 transfer RNA glutamic acid 22 (anticodon CUC) O - 20121230 -9606 100189386 TRNAQ29 - - HGNC:34954 1 - transfer RNA glutamine 29 (anticodon CUG) tRNA TRNAQ29 transfer RNA glutamine 29 (anticodon CUG) O - 20121230 -9606 100189387 TRNAI23 - - HGNC:34955 17 - transfer RNA isoleucine 23 (anticodon AAU) tRNA TRNAI23 transfer RNA isoleucine 23 (anticodon AAU) O - 20121230 -9606 100189388 TRNAP21 - - HGNC:34956 16 - transfer RNA proline 21 (anticodon UGG) tRNA TRNAP21 transfer RNA proline 21 (anticodon UGG) O - 20121230 -9606 100189389 TRNAQ30 - - HGNC:34957 12 - transfer RNA glutamine 30 (anticodon CUG) tRNA TRNAQ30 transfer RNA glutamine 30 (anticodon CUG) O - 20120318 -9606 100189390 TRNAK31 - - HGNC:34958 6 - transfer RNA lysine 31 (anticodon UUU) tRNA TRNAK31 transfer RNA lysine 31 (anticodon UUU) O - 20121230 -9606 100189391 TRNAM20 - - HGNC:34959 6 - transfer RNA methionine 20 (anticodon CAU) tRNA TRNAM20 transfer RNA methionine 20 (anticodon CAU) O - 20121209 -9606 100189392 TRNAK32 - - HGNC:34960 19 - transfer RNA lysine 32 (anticodon UUU) tRNA TRNAK32 transfer RNA lysine 32 (anticodon UUU) O - 20120318 -9606 100189393 TRNAI24 - - HGNC:34961 17 - transfer RNA isoleucine 24 (anticodon AAU) tRNA TRNAI24 transfer RNA isoleucine 24 (anticodon AAU) O - 20121230 -9606 100189394 TRNAL38 - - HGNC:34962 1 - transfer RNA leucine 38 (anticodon CAG) tRNA TRNAL38 transfer RNA leucine 38 (anticodon CAG) O - 20121230 -9606 100189395 TRNAA38 - - HGNC:34963 6 - transfer RNA alanine 38 (anticodon CGC) tRNA TRNAA38 transfer RNA alanine 38 (anticodon CGC) O - 20121230 -9606 100189396 TRNAR26 - - HGNC:34964 6 - transfer RNA arginine 26 (anticodon ACG) tRNA TRNAR26 transfer RNA arginine 26 (anticodon ACG) O - 20121230 -9606 100189397 TRNAQ31 - - HGNC:34965 16 - transfer RNA glutamine 31 (anticodon UUG) tRNA TRNAQ31 transfer RNA glutamine 31 (anticodon UUG) O - 20120318 -9606 100189398 TRNAA39 - - HGNC:34966 8 - transfer RNA alanine 39 (anticodon AGC) tRNA TRNAA39 transfer RNA alanine 39 (anticodon AGC) O - 20121230 -9606 100189399 TRNAK33 - - HGNC:34967 5 - transfer RNA lysine 33 (anticodon CUU) tRNA TRNAK33 transfer RNA lysine 33 (anticodon CUU) O - 20121230 -9606 100189400 TRNAA40 - - HGNC:34969 6 - transfer RNA alanine 40 (anticodon CGC) tRNA TRNAA40 transfer RNA alanine 40 (anticodon CGC) O - 20121230 -9606 100189401 TRNAI25 - - HGNC:34970 6 - transfer RNA isoleucine 25 (anticodon AAU) tRNA TRNAI25 transfer RNA isoleucine 25 (anticodon AAU) O - 20121209 -9606 100189402 TRNAN32 - - HGNC:34971 1 - transfer RNA asparagine 32 (anticodon GUU) tRNA TRNAN32 transfer RNA asparagine 32 (anticodon GUU) O - 20121230 -9606 100189404 TRNAV30 - - HGNC:34973 1 - transfer RNA valine 30 (anticodon AAC) tRNA TRNAV30 transfer RNA valine 30 (anticodon AAC) O - 20120318 -9606 100189405 TRNAY13 - - HGNC:34974 14 - transfer RNA tyrosine 13 (anticodon GUA) tRNA TRNAY13 transfer RNA tyrosine 13 (anticodon GUA) O - 20121230 -9606 100189406 TRNAR27 - - HGNC:34975 7 - transfer RNA arginine 27 (anticodon CCU) tRNA TRNAR27 transfer RNA arginine 27 (anticodon CCU) O - 20121230 -9606 100189407 TRNAE23 - - HGNC:34976 1 - transfer RNA glutamic acid 23 (anticodon UUC) tRNA TRNAE23 transfer RNA glutamic acid 23 (anticodon UUC) O - 20121230 -9606 100189408 TRNAV31 - - HGNC:34977 6 - transfer RNA valine 31 (anticodon UAC) tRNA TRNAV31 transfer RNA valine 31 (anticodon UAC) O - 20121230 -9606 100189409 TRNAE24 - - HGNC:34978 1 - transfer RNA glutamic acid 24 (anticodon CUC) tRNA TRNAE24 transfer RNA glutamic acid 24 (anticodon CUC) O - 20121230 -9606 100189410 TRNAR28 - - HGNC:34979 6 - transfer RNA arginine 28 (anticodon UCG) tRNA TRNAR28 transfer RNA arginine 28 (anticodon UCG) O - 20121230 -9606 100189411 TRNAA41 - - HGNC:34980 6 - transfer RNA alanine 41 (anticodon AGC) tRNA TRNAA41 transfer RNA alanine 41 (anticodon AGC) O - 20121230 -9606 100189412 TRNAD18 - - HGNC:34981 1 - transfer RNA aspartic acid 18 (anticodon GUC) tRNA TRNAD18 transfer RNA aspartic acid 18 (anticodon GUC) O - 20121230 -9606 100189413 TRNAC28 - - HGNC:34982 7 - transfer RNA cysteine 28 (anticodon GCA) tRNA TRNAC28 transfer RNA cysteine 28 (anticodon GCA) O - 20121230 -9606 100189414 TRNAC29 - - HGNC:34983 17 - transfer RNA cysteine 29 (anticodon GCA) tRNA TRNAC29 transfer RNA cysteine 29 (anticodon GCA) O - 20121230 -9606 100189415 TRNAF11 - - HGNC:34984 11 - transfer RNA phenylalanine 11 (anticodon GAA) tRNA TRNAF11 transfer RNA phenylalanine 11 (anticodon GAA) O - 20121230 -9606 100189416 TRNAV32 - - HGNC:34985 19 - transfer RNA valine 32 (anticodon CAC) tRNA TRNAV32 transfer RNA valine 32 (anticodon CAC) O - 20121230 -9606 100189417 TRNAE25 - - HGNC:34986 18 - transfer RNA glutamic acid 25 (anticodon CUC) tRNA TRNAE25 transfer RNA glutamic acid 25 (anticodon CUC) O - 20120318 -9606 100189418 TRNAE26 - - HGNC:34987 2 - transfer RNA glutamic acid 26 (anticodon UUC) tRNA TRNAE26 transfer RNA glutamic acid 26 (anticodon UUC) O - 20121230 -9606 100189419 TRNAT20 - - HGNC:34988 14 - transfer RNA threonine 20 (anticodon UGU) tRNA TRNAT20 transfer RNA threonine 20 (anticodon UGU) O - 20121230 -9606 100189420 TRNAS26 - - HGNC:34989 11 - transfer RNA serine 26 (anticodon AGA) tRNA TRNAS26 transfer RNA serine 26 (anticodon AGA) O - 20120318 -9606 100189421 TRNAF12 - - HGNC:34990 6 - transfer RNA phenylalanine 12 (anticodon GAA) tRNA TRNAF12 transfer RNA phenylalanine 12 (anticodon GAA) O - 20120318 -9606 100189422 TRNAQ32 - - HGNC:34991 6 - transfer RNA glutamine 32 (anticodon UUG) tRNA TRNAQ32 transfer RNA glutamine 32 (anticodon UUG) O - 20121230 -9606 100189423 TRNAA42 - - HGNC:34992 6 - transfer RNA alanine 42 (anticodon AGC) tRNA TRNAA42 transfer RNA alanine 42 (anticodon AGC) O - 20120318 -9606 100189424 TRNAY14 - - HGNC:34993 14 - transfer RNA tyrosine 14 (anticodon GUA) tRNA TRNAY14 transfer RNA tyrosine 14 (anticodon GUA) O - 20121230 -9606 100189425 TRNAK34 - - HGNC:34994 1 - transfer RNA lysine 34 (anticodon UUU) tRNA TRNAK34 transfer RNA lysine 34 (anticodon UUU) O - 20121230 -9606 100189426 TRNASUP3 - - HGNC:34995 17 - transfer RNA suppressor 3 (anticodon CUA) tRNA TRNASUP3 transfer RNA suppressor 3 (anticodon CUA) O - 20120318 -9606 100189427 TRNAI26 - - HGNC:34996 X - transfer RNA isoleucine 26 (anticodon GAU) tRNA TRNAI26 transfer RNA isoleucine 26 (anticodon GAU) O - 20121209 -9606 100189428 TRNAR29 - - HGNC:34997 6 - transfer RNA arginine 29 (anticodon ACG) tRNA TRNAR29 transfer RNA arginine 29 (anticodon ACG) O - 20121230 -9606 100189429 TRNAL39 - - HGNC:34998 20 - transfer RNA leucine 39 (anticodon AAG) tRNA TRNAL39 transfer RNA leucine 39 (anticodon AAG) O - 20120318 -9606 100189430 TRNAS27 - - HGNC:34999 6 - transfer RNA serine 27 (anticodon UGA) tRNA TRNAS27 transfer RNA serine 27 (anticodon UGA) O - 20121230 -9606 100189431 TRNAD19 - - HGNC:35000 12 - transfer RNA aspartic acid 19 (anticodon GUC) tRNA TRNAD19 transfer RNA aspartic acid 19 (anticodon GUC) O - 20120318 -9606 100189432 TRNAS28 - - HGNC:35001 7 - transfer RNA serine 28 (anticodon AGA) tRNA TRNAS28 transfer RNA serine 28 (anticodon AGA) O - 20121230 -9606 100189433 TRNAT21 - - HGNC:35003 6 - transfer RNA threonine 21 (anticodon AGU) tRNA TRNAT21 transfer RNA threonine 21 (anticodon AGU) O - 20121230 -9606 100189434 TRNAA43 - - HGNC:35004 6 - transfer RNA alanine 43 (anticodon AGC) tRNA TRNAA43 transfer RNA alanine 43 (anticodon AGC) O - 20120318 -9606 100189435 TRNAC30 - - HGNC:35005 17 - transfer RNA cysteine 30 (anticodon GCA) tRNA TRNAC30 transfer RNA cysteine 30 (anticodon GCA) O - 20121230 -9606 100189436 TRNAW9 - - HGNC:35006 6 - transfer RNA tryptophan 9 (anticodon CCA) tRNA TRNAW9 transfer RNA tryptophan 9 (anticodon CCA) O - 20121230 -9606 100189437 TRNAY15 - - HGNC:35007 8 - transfer RNA tyrosine 15 (anticodon GUA) tRNA TRNAY15 transfer RNA tyrosine 15 (anticodon GUA) O - 20121230 -9606 100189438 TRNAT22 - - HGNC:35008 17 - transfer RNA threonine 22 (anticodon AGU) tRNA TRNAT22 transfer RNA threonine 22 (anticodon AGU) O - 20121230 -9606 100189439 TRNAK35P - - HGNC:35009 1 1q24.1 transfer RNA lysine 35 (anticodon CUU) pseudogene pseudo TRNAK35P transfer RNA lysine 35 (anticodon CUU) pseudogene O - 20120720 -9606 100189440 TRNAE27P - - HGNC:35010 3 3q13.11 transfer RNA glutamic acid 27 (anticodon CUC) pseudogene pseudo TRNAE27P transfer RNA glutamic acid 27 (anticodon CUC) pseudogene O - 20121230 -9606 100189441 TRNAL40P - - HGNC:35011 14 14q11.2 transfer RNA leucine 40 (anticodon UAG) pseudogene pseudo TRNAL40P transfer RNA leucine 40 (anticodon UAG) pseudogene O - 20121230 -9606 100189442 TRNASUP4P - - HGNC:35012 3 3p25.1 transfer RNA suppressor 4 (anticodon CUA) pseudogene pseudo TRNASUP4P transfer RNA suppressor 4 (anticodon CUA) pseudogene O - 20120720 -9606 100189443 TRNAR30P - - HGNC:35013 1 1q21.2 transfer RNA arginine 30 (anticodon CCU) pseudogene pseudo TRNAR30P transfer RNA arginine 30 (anticodon CCU) pseudogene O - 20121230 -9606 100189444 TRNAQ33P - - HGNC:35014 5 5q14.1 transfer RNA glutamine 33 (anticodon UUG) pseudogene pseudo TRNAQ33P transfer RNA glutamine 33 (anticodon UUG) pseudogene O - 20121230 -9606 100189445 TRNAQ34P - - HGNC:35015 2 2q21.1 transfer RNA glutamine 34 (anticodon UUG) pseudogene pseudo TRNAQ34P transfer RNA glutamine 34 (anticodon UUG) pseudogene O - 20121230 -9606 100189446 TRNAF13P - - HGNC:35016 6 6q14.1 transfer RNA phenylalanine 13 (anticodon GAA) pseudogene pseudo TRNAF13P transfer RNA phenylalanine 13 (anticodon GAA) pseudogene O - 20121230 -9606 100189447 TRNAC31P - - HGNC:35017 3 3p24.3 transfer RNA cysteine 31 (anticodon GCA) pseudogene pseudo TRNAC31P transfer RNA cysteine 31 (anticodon GCA) pseudogene O - 20121230 -9606 100189448 TRNAQ35P - - HGNC:35018 Y Yp11.2 transfer RNA glutamine 35 (anticodon UUG) pseudogene pseudo TRNAQ35P transfer RNA glutamine 35 (anticodon UUG) pseudogene O - 20121230 -9606 100189449 TRNAR31P - - HGNC:35019 1 1q21.2 transfer RNA arginine 31 (anticodon CCU) pseudogene pseudo TRNAR31P transfer RNA arginine 31 (anticodon CCU) pseudogene O - 20121230 -9606 100189450 TRNAE28P - - HGNC:35020 8 8q13.2 transfer RNA glutamic acid 28 (anticodon CUC) pseudogene pseudo TRNAE28P transfer RNA glutamic acid 28 (anticodon CUC) pseudogene O - 20121230 -9606 100189451 TRNAQ36P - - HGNC:35022 2 2q21.1 transfer RNA glutamine 36 (anticodon UUG) pseudogene pseudo TRNAQ36P transfer RNA glutamine 36 (anticodon UUG) pseudogene O - 20121230 -9606 100189452 TRNAQ37P - - HGNC:35023 1 1q21.2 transfer RNA glutamine 37 (anticodon CUG) pseudogene pseudo TRNAQ37P transfer RNA glutamine 37 (anticodon CUG) pseudogene O - 20121230 -9606 100189453 TRNASUP5P - - HGNC:35024 4 4p16.1 transfer RNA suppressor 5 (anticodon UUA) pseudogene pseudo TRNASUP5P transfer RNA suppressor 5 (anticodon UUA) pseudogene O - 20121230 -9606 100189454 TRNAE29P - - HGNC:35025 1 1q21.2 transfer RNA glutamic acid 29 (anticodon UUC) pseudogene pseudo TRNAE29P transfer RNA glutamic acid 29 (anticodon UUC) pseudogene O - 20121230 -9606 100189455 TRNAP22P - - HGNC:35026 10 10p12.2 transfer RNA proline 22 (anticodon GGG) pseudogene pseudo TRNAP22P transfer RNA proline 22 (anticodon GGG) pseudogene O - 20121230 -9606 100189456 TRNAL41P - - HGNC:35027 8 8q11.1 transfer RNA leucine 41 (anticodon UAA) pseudogene pseudo TRNAL41P transfer RNA leucine 41 (anticodon UAA) pseudogene O - 20121230 -9606 100189457 TRNAE30P - - HGNC:35028 1 1q21.2 transfer RNA glutamic acid 30 (anticodon UUC) pseudogene pseudo TRNAE30P transfer RNA glutamic acid 30 (anticodon UUC) pseudogene O - 20121230 -9606 100189458 TRNAG32P - - HGNC:35030 2 2p25.1 transfer RNA glycine 32 (anticodon CCC) pseudogene pseudo TRNAG32P transfer RNA glycine 32 (anticodon CCC) pseudogene O - 20121230 -9606 100189459 TRNAE31P - - HGNC:35031 2 2q11.1 transfer RNA glutamic acid 31 (anticodon CUC) pseudogene pseudo TRNAE31P transfer RNA glutamic acid 31 (anticodon CUC) pseudogene O - 20120720 -9606 100189460 TRNAG33P - - HGNC:35032 18 18q21.31 transfer RNA glycine 33 (anticodon UCC) pseudogene pseudo TRNAG33P transfer RNA glycine 33 (anticodon UCC) pseudogene O - 20120815 -9606 100189461 TRNAQ38P - - HGNC:35033 10 10p12.31 transfer RNA glutamine 38 (anticodon CUG) pseudogene pseudo TRNAQ38P transfer RNA glutamine 38 (anticodon CUG) pseudogene O - 20121230 -9606 100189462 TRNAI28P - - HGNC:35034 6 6p22.1 transfer RNA isoleucine 28 (anticodon AAU) pseudogene pseudo TRNAI28P transfer RNA isoleucine 28 (anticodon AAU) pseudogene O - 20121230 -9606 100189463 TRNAP23P - - HGNC:35035 1 1q43 transfer RNA proline 23 (anticodon UGG) pseudogene pseudo TRNAP23P transfer RNA proline 23 (anticodon UGG) pseudogene O - 20121230 -9606 100189464 TRNAK36P - - HGNC:35036 1 1p34.3 transfer RNA lysine 36 (anticodon CUU) pseudogene pseudo TRNAK36P transfer RNA lysine 36 (anticodon CUU) pseudogene O - 20120720 -9606 100189465 TRNAE32P - - HGNC:35037 1 1q21.2 transfer RNA glutamic acid 32 (anticodon UUC) pseudogene pseudo TRNAE32P transfer RNA glutamic acid 32 (anticodon UUC) pseudogene O - 20121230 -9606 100189466 TRNAL42P - - HGNC:35038 20 20q13.31 transfer RNA leucine 42 (anticodon UAA) pseudogene pseudo TRNAL42P transfer RNA leucine 42 (anticodon UAA) pseudogene O - 20121230 -9606 100189467 TRNAK37P - - HGNC:35039 16 16p13.3 transfer RNA lysine 37 (anticodon CUU) pseudogene pseudo TRNAK37P transfer RNA lysine 37 (anticodon CUU) pseudogene O - 20121230 -9606 100189468 TRNAA44P - - HGNC:35040 6 6p22.1 transfer RNA alanine 44 (anticodon AGC) pseudogene pseudo TRNAA44P transfer RNA alanine 44 (anticodon AGC) pseudogene O - 20121230 -9606 100189469 TRNAA45P - - HGNC:35041 11 11q12.2 transfer RNA alanine 45 (anticodon UGC) pseudogene pseudo TRNAA45P transfer RNA alanine 45 (anticodon UGC) pseudogene O - 20121230 -9606 100189470 TRNASUP6P - - HGNC:35043 14 14q24.3 transfer RNA suppressor 6 (anticodon CUA) pseudogene pseudo TRNASUP6P transfer RNA suppressor 6 (anticodon CUA) pseudogene O - 20121230 -9606 100189471 TRNAF14P - - HGNC:35044 8 8q24.13 transfer RNA phenylalanine 14 (anticodon GAA) pseudogene pseudo TRNAF14P transfer RNA phenylalanine 14 (anticodon GAA) pseudogene O - 20121230 -9606 100189472 TRNAF15P - - HGNC:35045 6 6p22.1 transfer RNA phenylalanine 15 (anticodon GAA) pseudogene pseudo TRNAF15P transfer RNA phenylalanine 15 (anticodon GAA) pseudogene O - 20121230 -9606 100189473 TRNAQ39P - - HGNC:35046 2 2p21 transfer RNA glutamine 39 (anticodon UUG) pseudogene pseudo TRNAQ39P transfer RNA glutamine 39 (anticodon UUG) pseudogene O - 20121230 -9606 100189474 TRNAI29P - - HGNC:35047 12 12q24.33 transfer RNA isoleucine 29 (anticodon AAU) pseudogene pseudo TRNAI29P transfer RNA isoleucine 29 (anticodon AAU) pseudogene O - 20121230 -9606 100189475 TRNAQ40P - - HGNC:35048 X Xp11.21 transfer RNA glutamine 40 (anticodon UUG) pseudogene pseudo TRNAQ40P transfer RNA glutamine 40 (anticodon UUG) pseudogene O - 20121230 -9606 100189476 TRNAP24P - - HGNC:35049 16 16p13.3 transfer RNA proline 24 (anticodon AGG) pseudogene pseudo TRNAP24P transfer RNA proline 24 (anticodon AGG) pseudogene O - 20121230 -9606 100189477 TRNAV33P - - HGNC:35050 20 20q13.12 transfer RNA valine 33 (anticodon CAC) pseudogene pseudo TRNAV33P transfer RNA valine 33 (anticodon CAC) pseudogene O - 20121230 -9606 100189478 TRNAQ41P - - HGNC:35051 17 17p11.2 transfer RNA glutamine 41 (anticodon UUG) pseudogene pseudo TRNAQ41P transfer RNA glutamine 41 (anticodon UUG) pseudogene O - 20121230 -9606 100189479 TRNAV34P - - HGNC:35052 1 1p36.13 transfer RNA valine 34 (anticodon CAC) pseudogene pseudo TRNAV34P transfer RNA valine 34 (anticodon CAC) pseudogene O - 20121230 -9606 100189480 TRNAK38P - - HGNC:35053 19 19q13.2 transfer RNA lysine 38 (anticodon UUU) pseudogene pseudo TRNAK38P transfer RNA lysine 38 (anticodon UUU) pseudogene O - 20121230 -9606 100189481 TRNAI30P - - HGNC:35054 20 20q13.2 transfer RNA isoleucine 30 (anticodon AAU) pseudogene pseudo TRNAI30P transfer RNA isoleucine 30 (anticodon AAU) pseudogene O - 20121230 -9606 100189482 TRNAP25P - - HGNC:35055 2 2p12 transfer RNA proline 25 (anticodon AGG) pseudogene pseudo TRNAP25P transfer RNA proline 25 (anticodon AGG) pseudogene O - 20121230 -9606 100189483 TRNAP26P - - HGNC:35056 16 16p13.3 transfer RNA proline 26 (anticodon UGG) pseudogene pseudo TRNAP26P transfer RNA proline 26 (anticodon UGG) pseudogene O - 20121230 -9606 100189484 TRNAE33P - - HGNC:35057 6 6q26 transfer RNA glutamic acid 33 (anticodon UUC) pseudogene pseudo TRNAE33P transfer RNA glutamic acid 33 (anticodon UUC) pseudogene O - 20121230 -9606 100189485 TRNAE34P - - HGNC:35058 1 1q21.1 transfer RNA glutamic acid 34 (anticodon UUC) pseudogene pseudo TRNAE34P transfer RNA glutamic acid 34 (anticodon UUC) pseudogene O - 20121230 -9606 100189486 TRNAG36 - TRNAV35P HGNC:35059 1 1p36.13 transfer RNA glycine 36 (anticodon CCC) pseudo TRNAG36 transfer RNA glycine 36 (anticodon CCC) O - 20121230 -9606 100189487 TRNAS29P - - HGNC:35060 20 20q11.21 transfer RNA serine 29 (anticodon AGA) pseudogene pseudo TRNAS29P transfer RNA serine 29 (anticodon AGA) pseudogene O - 20121230 -9606 100189488 TRNAE35P - - HGNC:35061 8 8p23.1 transfer RNA glutamic acid 35 (anticodon CUC) pseudogene pseudo TRNAE35P transfer RNA glutamic acid 35 (anticodon CUC) pseudogene O - 20120720 -9606 100189489 TRNAQ42P - - HGNC:35062 3 3q13.12 transfer RNA glutamine 42 (anticodon UUG) pseudogene pseudo TRNAQ42P transfer RNA glutamine 42 (anticodon UUG) pseudogene O - 20121230 -9606 100189490 TRNAN34P - - HGNC:35064 1 1q21.2 transfer RNA asparagine 34 (anticodon GUU) pseudogene pseudo TRNAN34P transfer RNA asparagine 34 (anticodon GUU) pseudogene O - 20121230 -9606 100189491 TRNAE36P - - HGNC:35065 2 2q24.1 transfer RNA glutamic acid 36 (anticodon CUC) pseudogene pseudo TRNAE36P transfer RNA glutamic acid 36 (anticodon CUC) pseudogene O - 20120720 -9606 100189492 TRNAE37P - - HGNC:35067 X Xp11.22 transfer RNA glutamic acid 37 (anticodon CUC) pseudogene pseudo TRNAE37P transfer RNA glutamic acid 37 (anticodon CUC) pseudogene O - 20120720 -9606 100189493 TRNAL43P - - HGNC:35068 5 5q35.3 transfer RNA leucine 43 (anticodon AAG) pseudogene pseudo TRNAL43P transfer RNA leucine 43 (anticodon AAG) pseudogene O - 20121230 -9606 100189494 TRNAE38P - - HGNC:35069 2 2q23.3 transfer RNA glutamic acid 38 (anticodon CUC) pseudogene pseudo TRNAE38P transfer RNA glutamic acid 38 (anticodon CUC) pseudogene O - 20121230 -9606 100189495 TRNAD20P - - HGNC:35070 1 1q23.3 transfer RNA aspartic acid 20 (anticodon GUC) pseudogene pseudo TRNAD20P transfer RNA aspartic acid 20 (anticodon GUC) pseudogene O - 20121230 -9606 100189496 TRNAY16P - - HGNC:35071 15 15q26.1 transfer RNA tyrosine 16 (anticodon GUA) pseudogene pseudo TRNAY16P transfer RNA tyrosine 16 (anticodon GUA) pseudogene O - 20121230 -9606 100189497 TRNAF16P - - HGNC:35072 1 1q21.2 transfer RNA phenylalanine 16 (anticodon GAA) pseudogene pseudo TRNAF16P transfer RNA phenylalanine 16 (anticodon GAA) pseudogene O - 20121230 -9606 100189498 TRNAG34P - - HGNC:35073 1 1q21.2 transfer RNA glycine 34 (anticodon CCC) pseudogene pseudo TRNAG34P transfer RNA glycine 34 (anticodon CCC) pseudogene O - 20121230 -9606 100189499 TRNAL44P - - HGNC:35074 10 10p11.21 transfer RNA leucine 44 (anticodon CAA) pseudogene pseudo TRNAL44P transfer RNA leucine 44 (anticodon CAA) pseudogene O - 20120720 -9606 100189500 TRNAV36P - - HGNC:35075 1 1p36.13 transfer RNA valine 36 (anticodon CAC) pseudogene pseudo TRNAV36P transfer RNA valine 36 (anticodon CAC) pseudogene O - 20121230 -9606 100189501 TRNAQ43P - - HGNC:35076 8 8p12 transfer RNA glutamine 43 (anticodon UUG) pseudogene pseudo TRNAQ43P transfer RNA glutamine 43 (anticodon UUG) pseudogene O - 20121230 -9606 100189502 TRNAR32P - - HGNC:35077 1 1q21.2 transfer RNA arginine 32 (anticodon CCU) pseudogene pseudo TRNAR32P transfer RNA arginine 32 (anticodon CCU) pseudogene O - 20121230 -9606 100189503 TRNAQ44P - - HGNC:35078 2 2q35 transfer RNA glutamine 44 (anticodon CUG) pseudogene pseudo TRNAQ44P transfer RNA glutamine 44 (anticodon CUG) pseudogene O - 20121230 -9606 100189504 TRNAK39P - - HGNC:35079 2 2q36.1 transfer RNA lysine 39 (anticodon UUU) pseudogene pseudo TRNAK39P transfer RNA lysine 39 (anticodon UUU) pseudogene O - 20121230 -9606 100189505 TRNAQ45P - - HGNC:35080 19 19p13.2 transfer RNA glutamine 45 (anticodon UUG) pseudogene pseudo TRNAQ45P transfer RNA glutamine 45 (anticodon UUG) pseudogene O - 20121230 -9606 100189506 TRNAE39P - - HGNC:35081 13 13q21.1 transfer RNA glutamic acid 39 (anticodon CUC) pseudogene pseudo TRNAE39P transfer RNA glutamic acid 39 (anticodon CUC) pseudogene O - 20121230 -9606 100189507 TRNAY17P - - HGNC:35082 7 7q36.1 transfer RNA tyrosine 17 (anticodon GUA) pseudogene pseudo TRNAY17P transfer RNA tyrosine 17 (anticodon GUA) pseudogene O - 20121230 -9606 100189508 TRNAC32P - - HGNC:35083 5 5q33.1 transfer RNA cysteine 32 (anticodon ACA) pseudogene pseudo TRNAC32P transfer RNA cysteine 32 (anticodon ACA) pseudogene O - 20121230 -9606 100189509 TRNAQ46P - - HGNC:35084 12 12q23.1 transfer RNA glutamine 46 (anticodon UUG) pseudogene pseudo TRNAQ46P transfer RNA glutamine 46 (anticodon UUG) pseudogene O - 20121230 -9606 100189510 TRNAQ47P - - HGNC:35085 12 12q13.12 transfer RNA glutamine 47 (anticodon UUG) pseudogene pseudo TRNAQ47P transfer RNA glutamine 47 (anticodon UUG) pseudogene O - 20121230 -9606 100189511 TRNAG35P - - HGNC:35086 18 18q21.31 transfer RNA glycine 35 (anticodon UCC) pseudogene pseudo TRNAG35P transfer RNA glycine 35 (anticodon UCC) pseudogene O - 20120815 -9606 100189512 TRNAS30P - - HGNC:35087 17 17p11.2 transfer RNA serine 30 (anticodon UGA) pseudogene pseudo TRNAS30P transfer RNA serine 30 (anticodon UGA) pseudogene O - 20121230 -9606 100189513 TRNAV37P - - HGNC:35088 6 6q25.3 transfer RNA valine 37 (anticodon UAC) pseudogene pseudo TRNAV37P transfer RNA valine 37 (anticodon UAC) pseudogene O - 20121230 -9606 100189514 TRNAK40P - - HGNC:35089 14 14q24.3 transfer RNA lysine 40 (anticodon UUU) pseudogene pseudo TRNAK40P transfer RNA lysine 40 (anticodon UUU) pseudogene O - 20120720 -9606 100189515 TRNAP27P - - HGNC:35090 1 1q32.1 transfer RNA proline 27 (anticodon UGG) pseudogene pseudo TRNAP27P transfer RNA proline 27 (anticodon UGG) pseudogene O - 20121230 -9606 100189516 TRNAQ48P - - HGNC:35091 7 7q34 transfer RNA glutamine 48 (anticodon UUG) pseudogene pseudo TRNAQ48P transfer RNA glutamine 48 (anticodon UUG) pseudogene O - 20121230 -9606 100189517 TRNAN35 - TRNAN35P HGNC:35092 1 1q21.1 transfer RNA asparagine 35 (anticodon GUU) tRNA TRNAN35 transfer RNA asparagine 35 (anticodon GUU) O - 20120511 -9606 100189518 TRNAE40P - - HGNC:35093 2 2q33.2 transfer RNA glutamic acid 40 (anticodon UUC) pseudogene pseudo TRNAE40P transfer RNA glutamic acid 40 (anticodon UUC) pseudogene O - 20121230 -9606 100189519 TRNAK41P - - HGNC:35094 8 8p22 transfer RNA lysine 41 (anticodon UUU) pseudogene pseudo TRNAK41P transfer RNA lysine 41 (anticodon UUU) pseudogene O - 20121230 -9606 100189520 TRNAL45P - - HGNC:35095 1 1q43 transfer RNA leucine 45 (anticodon UAA) pseudogene pseudo TRNAL45P transfer RNA leucine 45 (anticodon UAA) pseudogene O - 20121230 -9606 100189521 TRNAR33P - - HGNC:35096 1 1q21.1 transfer RNA arginine 33 (anticodon CCU) pseudogene pseudo TRNAR33P transfer RNA arginine 33 (anticodon CCU) pseudogene O - 20121230 -9606 100189522 TRNAL46P - - HGNC:35097 2 2q14.1 transfer RNA leucine 46 (anticodon UAA) pseudogene pseudo TRNAL46P transfer RNA leucine 46 (anticodon UAA) pseudogene O - 20121230 -9606 100189523 TRNAQ55 - - HGNC:38574 1 1p36.13 transfer RNA glutamine 55 (anticodon CUG) tRNA TRNAQ55 transfer RNA glutamine 55 (anticodon CUG) O - 20121102 -9606 100189524 TRNAQ50P - - HGNC:35099 13 13q13.3 transfer RNA glutamine 50 (anticodon UUG) pseudogene pseudo TRNAQ50P transfer RNA glutamine 50 (anticodon UUG) pseudogene O - 20121230 -9606 100189525 TRNAS31P - - HGNC:35100 2 2q21.1 transfer RNA serine 31 (anticodon UGA) pseudogene pseudo TRNAS31P transfer RNA serine 31 (anticodon UGA) pseudogene O - 20121230 -9606 100189526 TRNAS32P - - HGNC:35102 6 6p22.1 transfer RNA serine 32 (anticodon ACU) pseudogene pseudo TRNAS32P transfer RNA serine 32 (anticodon ACU) pseudogene O - 20121230 -9606 100189527 TRNAE41P - - HGNC:35104 2 2p13.3 transfer RNA glutamic acid 41 (anticodon CUC) pseudogene pseudo TRNAE41P transfer RNA glutamic acid 41 (anticodon CUC) pseudogene O - 20120720 -9606 100189528 TRNAE42P - - HGNC:35105 12 12q24.21 transfer RNA glutamic acid 42 (anticodon CUC) pseudogene pseudo TRNAE42P transfer RNA glutamic acid 42 (anticodon CUC) pseudogene O - 20121230 -9606 100189529 TRNAA46P - - HGNC:35106 6 6p22.1 transfer RNA alanine 46 (anticodon UGC) pseudogene pseudo TRNAA46P transfer RNA alanine 46 (anticodon UGC) pseudogene O - 20121230 -9606 100189530 TRNAP28P - - HGNC:35107 2 2p11.2 transfer RNA proline 28 (anticodon AGG) pseudogene pseudo TRNAP28P transfer RNA proline 28 (anticodon AGG) pseudogene O - 20121230 -9606 100189531 TRNAQ51P - - HGNC:35108 1 1q21.2 transfer RNA glutamine 51 (anticodon CUG) pseudogene pseudo TRNAQ51P transfer RNA glutamine 51 (anticodon CUG) pseudogene O - 20121230 -9606 100189532 TRNAE43P - - HGNC:35109 20 20p12.1 transfer RNA glutamic acid 43 (anticodon CUC) pseudogene pseudo TRNAE43P transfer RNA glutamic acid 43 (anticodon CUC) pseudogene O - 20121230 -9606 100189533 TRNAF17P - - HGNC:35110 1 1q21.2 transfer RNA phenylalanine 17 (anticodon GAA) pseudogene pseudo TRNAF17P transfer RNA phenylalanine 17 (anticodon GAA) pseudogene O - 20121230 -9606 100189534 TRNAN36P - - HGNC:35111 1 1q21.2 transfer RNA asparagine 36 (anticodon GUU) pseudogene pseudo TRNAN36P transfer RNA asparagine 36 (anticodon GUU) pseudogene O - 20121230 -9606 100189535 TRNAQ52P - - HGNC:35112 7 7p11.2 transfer RNA glutamine 52 (anticodon UUG) pseudogene pseudo TRNAQ52P transfer RNA glutamine 52 (anticodon UUG) pseudogene O - 20121230 -9606 100189536 TRNAK42P - - HGNC:35113 15 15q24.3 transfer RNA lysine 42 (anticodon CUU) pseudogene pseudo TRNAK42P transfer RNA lysine 42 (anticodon CUU) pseudogene O - 20121230 -9606 100189537 TRNAR34P - - HGNC:35114 11 11q13.1 transfer RNA arginine 34 (anticodon CCU) pseudogene pseudo TRNAR34P transfer RNA arginine 34 (anticodon CCU) pseudogene O - 20121230 -9606 100189538 TRNAQ53P - - HGNC:35115 5 5q33.1 transfer RNA glutamine 53 (anticodon CUG) pseudogene pseudo TRNAQ53P transfer RNA glutamine 53 (anticodon CUG) pseudogene O - 20121230 -9606 100189539 TRNAK43P - - HGNC:35116 6 6p22.1 transfer RNA lysine 43 (anticodon UUU) pseudogene pseudo TRNAK43P transfer RNA lysine 43 (anticodon UUU) pseudogene O - 20121230 -9606 100189540 TRNAQ54P - - HGNC:35117 4 4q32.1 transfer RNA glutamine 54 (anticodon UUG) pseudogene pseudo TRNAQ54P transfer RNA glutamine 54 (anticodon UUG) pseudogene O - 20121230 -9606 100189541 TRNAV4 - - HGNC:34541 5 - transfer RNA valine 4 (anticodon CAC) tRNA TRNAV4 transfer RNA valine 4 (anticodon CAC) O - 20121230 -9606 100189589 DCTN1-AS1 - - HGNC:44151 2 2p13 DCTN1 antisense RNA 1 miscRNA DCTN1-AS1 DCTN1 antisense RNA 1 O - 20121230 -9606 100190785 IS4 - - MIM:612238 9 9q31.2-q34.2 Scoliosis, idiopathic, susceptibility to, 4 unknown - - - - 20120622 -9606 100190786 CILD8 - - MIM:612274 15 15q24-q25 Ciliary dyskinesia, primary, 8 unknown - - - - 20120622 -9606 100190787 GEFSP6 - - MIM:612279 8 8p23-p21 Generalized epilepsy with febrile seizures plus, type 6 unknown - - - - 20120622 -9606 100190788 IBD20 - - MIM:612288 10 10q24 Inflammatory bowel disease-20 unknown - - - - 20120622 -9606 100190789 TSHQTL1 - - MIM:612306 5 5q13 Thyroid-stimulating hormone level QTL 1 unknown - - - - 20120622 -9606 100190790 ADHD5 - - MIM:612311 2 2q21.1 Attention deficit-hyperactivity disorder, susceptibility to, 5 unknown - - - - 20120622 -9606 100190791 ADHD6 - - MIM:612312 13 13q12.11 Attention deficit-hyperactivity disorder, susceptibility to, 6 unknown - - - - 20120622 -9606 100190799 LDHAP2 - LDHAL2 HGNC:6537 1 1q42.3 lactate dehydrogenase A pseudogene 2 pseudo LDHAP2 lactate dehydrogenase A pseudogene 2 O - 20121230 -9606 100190800 LDHAP7 - LDHAL7 HGNC:23144 2 2p11.2 lactate dehydrogenase A pseudogene 7 pseudo LDHAP7 lactate dehydrogenase A pseudogene 7 O - 20121230 -9606 100190922 LOC100190922 - - - 11 11q22.3 eukaryotic translation initiation factor 4E binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100190923 LOC100190923 - - - 15 15q15.2 eukaryotic translation initiation factor 4E binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100190924 LOC100190924 - - - 6 6q16.1 eukaryotic translation initiation factor 4E binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100190926 IBD19 - - MIM:612278 - - Inflammatory bowel disease 19 unknown - - - - 20120622 -9606 100190928 SLEB12 - - MIM:612254 8 8p23.1 Systemic lupus erythematosus, susceptibility to, 12 unknown - - - - 20120622 -9606 100190929 IBD15 - - MIM:612255 10 10q21 Inflammatory bowel disease-15 unknown - - - - 20120622 -9606 100190930 IBD16 - - MIM:612259 9 9q32 Inflammatory bowel disease-16 unknown - - - - 20120622 -9606 100190931 IBD18 - - MIM:612262 5 5p13.1 Inflammatory bowel disease-18 unknown - - - - 20120622 -9606 100190932 CMM7 - - MIM:612263 20 20q11.2 Melanoma, cutaneous malignant, susceptibility to, 7 unknown - - - - 20120622 -9606 100190933 SHEP11 - - MIM:612271 9 9p23 Skin/hair/eye pigmentation 11, blue/nonblue eyes unknown - - - - 20120622 -9606 100190934 LOC100190934 - - - 1 1p32.3 alcohol dehydrogenase 5 (class III), chi polypeptide pseudogene pseudo - - - - 20121230 -9606 100190938 RAMP2-AS1 - - HGNC:44358 17 17q21.31 RAMP2 antisense RNA 1 miscRNA RAMP2-AS1 RAMP2 antisense RNA 1 O - 20121230 -9606 100190939 TPT1-AS1 - - HGNC:43686 13 13q14.13 TPT1 antisense RNA 1 miscRNA TPT1-AS1 TPT1 antisense RNA 1 O - 20121230 -9606 100190940 LOC100190940 - - - 12 12q24.33 uncharacterized LOC100190940 miscRNA - - - - 20121230 -9606 100190947 SUPT4H1P - - HGNC:33981 2 2p12 SUPT4H1 pseudogene pseudo SUPT4H1P SUPT4H1 pseudogene O - 20121230 -9606 100190949 C5orf52 - - HGNC:35121|Ensembl:ENSG00000187658|Vega:OTTHUMG00000154518 5 5q33.3 chromosome 5 open reading frame 52 protein-coding C5orf52 chromosome 5 open reading frame 52 O uncharacterized protein C5orf52 20121230 -9606 100190952 NDUFB1P1 - NDUFB1P|bcm3095 HGNC:30893 3 3p21.31 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 pseudogene 1 pseudo NDUFB1P1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 pseudogene 1 O - 20121230 -9606 100190954 EXOSC3P2 - - HGNC:33990 19 19p13.2 exosome component 3 pseudogene 2 pseudo EXOSC3P2 exosome component 3 pseudogene 2 O - 20121230 -9606 100190955 FAM32D - - HGNC:34240 18 18q22.1 family with sequence similarity 32, member D (pseudogene) pseudo FAM32D family with sequence similarity 32, member D (pseudogene) O - 20121230 -9606 100190956 FAM32E - - HGNC:34241 12 12q24.32 family with sequence similarity 32, member E (pseudogene) pseudo FAM32E family with sequence similarity 32, member E (pseudogene) O - 20121230 -9606 100190982 DSAP3 - - MIM:612293 1 1p31.3-p31.1 Porokeratosis, disseminated superficial actinic, 3 unknown - - - - 20120622 -9606 100190983 DEL2Q32Q33 - C2DELq32q33 MIM:612313 2 2q32-q33 Chromosome 2q32-q33 deletion syndrome unknown - - - - 20120622 -9606 100190984 DEL1Q42Q44 - C1DELq42q44 MIM:612337 1 1q42-q44 Chromosome 1q42-q44 deletion syndrome unknown - - - - 20120622 -9606 100190985 IS5 - - MIM:612239 17 17q25.3 scoliosis, idiopathic, susceptibility to, 5 unknown - - - - 20120318 -9606 100190986 LOC100190986 - - - 16 16p12.2 uncharacterized LOC100190986 miscRNA - - - - 20121230 -9606 100190987 FDPSP10 - - HGNC:39087 15 15q15.2 farnesyl diphosphate synthase pseudogene 10 pseudo FDPSP10 farnesyl diphosphate synthase pseudogene 10 O - 20121230 -9606 100191039 RPL36AP33 - RPL36A_15_975 HGNC:36475 9 9p13.3 ribosomal protein L36a pseudogene 33 pseudo RPL36AP33 ribosomal protein L36a pseudogene 33 O - 20121230 -9606 100191040 C2CD4D - FAM148D HGNC:37210|Ensembl:ENSG00000225556|Vega:OTTHUMG00000167218 1 1q21.3 C2 calcium-dependent domain containing 4D protein-coding C2CD4D C2 calcium-dependent domain containing 4D O C2 calcium-dependent domain-containing protein 4D|family with sequence similarity 148, member D 20121230 -9606 100191063 SNAR-A14 - - HGNC:34338 19 19q13.33 small ILF3/NF90-associated RNA A14 snRNA SNAR-A14 small ILF3/NF90-associated RNA A14 O - 20121230 -9606 100192204 PPIAP30 - - HGNC:44878 10 10p13 peptidylprolyl isomerase A (cyclophilin A) pseudogene 30 pseudo PPIAP30 peptidylprolyl isomerase A (cyclophilin A) pseudogene 30 O - 20121230 -9606 100192306 JAWAD - - MIM:251255 - - Microcephaly with digital anomalies unknown - - - - 20121031 -9606 100192307 MUSQTL1 - - MIM:612343 4 4q22 Musical aptitude QTL 1 unknown - - - - 20120622 -9606 100192308 DEL2Q31 - - MIM:612345 2 2q31.2 Chromosome 2q31.2 deletion syndrome unknown - - - - 20120622 -9606 100192311 MUSTQTL1 - - MIM:612083 14 14q24.3 Muscle strength quantitative trait locus 1 unknown - - - - 20120622 -9606 100192312 IBD21 - - MIM:612354 18 18p11 Inflammatory bowel disease-21 unknown - - - - 20120622 -9606 100192378 ZFHX4-AS1 - - HGNC:44165 8 8q21.11 ZFHX4 antisense RNA 1 miscRNA ZFHX4-AS1 ZFHX4 antisense RNA 1 O - 20121230 -9606 100192379 PP12613 - - - 4 4q27 uncharacterized LOC100192379 miscRNA - - - - 20121230 -9606 100192386 FLJ16779 - - - 20 20q13.33 uncharacterized LOC100192386 miscRNA - - - - 20121230 -9606 100192388 LOC100192388 - - - 20 - anaphase promoting complex subunit 13 pseudogene pseudo - - - - 20121230 -9606 100192389 LOC100192389 - - - 1 1p12 anaphase promoting complex subunit 13 pseudogene pseudo - - - - 20121230 -9606 100192420 FLJ41941 - - - 22 22q11.21 uncharacterized LOC100192420 miscRNA - - - - 20121230 -9606 100192426 LOC100192426 hCG_2045685 - - 18 18p11.23 uncharacterized LOC100192426 miscRNA - - - - 20121230 -9606 100192455 FASA - - - 11 - fertility associated sperm antigen protein-coding - - - - 20120318 -9606 100194425 LOC100194425 - - - 16 16p11.2 B-cell receptor-associated protein 31 pseudogene pseudo - - - - 20121230 -9606 100194426 LOC100194426 - - - 16 16p11.2 B-cell receptor-associated protein 31 pseudogene pseudo - - - - 20121230 -9606 100196909 ALPQTL1 - - MIM:171720 9 9q34.13 Alkaline phosphatase, plasma level of, QTL1 unknown - - - - 20120622 -9606 100196910 PPPD1 - - MIM:175850 12 12q24.1-q24.2 Porokeratosis, palmar, plantar, and disseminated 1 unknown - - - - 20120622 -9606 100196911 DSAP4 - - MIM:612353 18 18p11.3 Porokeratosis, disseminated superficial actinic, 4 unknown - - - - 20120622 -9606 100196912 MAFD8 - - MIM:612357 10 10q21 Major affective disorder-8, susceptibility to unknown - - - - 20120622 -9606 100196913 SCZD14 - - MIM:612361 2 2q32.1 schizophrenia, susceptibility to, 14 unknown - - - - 20120622 -9606 100196914 ALPQTL2 - - MIM:612367 1 1p36 Alkaline phosphatase, plasma level of, QTL 2 unknown - - - - 20120622 -9606 100196915 ALPQTL3 - - MIM:612368 6 6p22 Alkaline phosphatase, plasma level of, QTL3 unknown - - - - 20120622 -9606 100196916 ALPQTL4 - - MIM:612369 10 10q21 Alkaline phosphatase, plasma level of, QTL4 unknown - - - - 20120622 -9606 100196917 MAFD9 - - MIM:612372 12 12p13.3 Major affective disorder-9, susceptibility to unknown - - - - 20120622 -9606 100196918 SLEB13 - - MIM:612378 6 6q23 Systemic lupus erythematosus, susceptibility to, 13 unknown - - - - 20120622 -9606 100196919 SS3 - - MIM:612388 10 10q22.3 Sarcoidosis, susceptibility to, 3 unknown - - - - 20120622 -9606 100196944 LOC100196944 - - - 7 7q32.1 CD2 (cytoplasmic tail) binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100216001 LINC00704 - - HGNC:44678 10 10p15.1 long intergenic non-protein coding RNA 704 miscRNA LINC00704 long intergenic non-protein coding RNA 704 O - 20121230 -9606 100216336 RPS24P8 - RPS24_4_368 HGNC:37016 3 3p21.31 ribosomal protein S24 pseudogene 8 pseudo RPS24P8 ribosomal protein S24 pseudogene 8 O - 20121230 -9606 100216337 LOC100216337 - - - 2 2p ADP-ribosylation factor-like 1 pseudogene pseudo - - - - 20121230 -9606 100216338 RPS24P13 RP11-460H18.2 RPS24_7_1030 HGNC:36805 10 10p11.22 ribosomal protein S24 pseudogene 13 pseudo RPS24P13 ribosomal protein S24 pseudogene 13 O - 20121230 -9606 100216339 RPS24P6 - RPS24_2_250 HGNC:36240 2 2q11.1 ribosomal protein S24 pseudogene 6 pseudo RPS24P6 ribosomal protein S24 pseudogene 6 O - 20121230 -9606 100216340 RPS24P16 - RPS24_6_1447 HGNC:35542 15 15q23 ribosomal protein S24 pseudogene 16 pseudo RPS24P16 ribosomal protein S24 pseudogene 16 O - 20121230 -9606 100216341 RPS24P17 - RPS24_7_1485 HGNC:36348 16 16q13 ribosomal protein S24 pseudogene 17 pseudo RPS24P17 ribosomal protein S24 pseudogene 17 O - 20121230 -9606 100216342 RPS24P7 - RPS24_1_225 HGNC:35737 2 2p15 ribosomal protein S24 pseudogene 7 pseudo RPS24P7 ribosomal protein S24 pseudogene 7 O - 20121230 -9606 100216344 DYT17 - - HGNC:35416|MIM:612406 20 20p11.2-q13.12 dystonia 17 unknown DYT17 dystonia 17 O - 20120622 -9606 100216346 LOC100216346 - - - 8 8q ADP-ribosylation-like factor 6 interacting protein 6 pseudogene pseudo - - - - 20121230 -9606 100216355 LOC100216355 - - - 11 11p methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria pseudogene pseudo - - - - 20121230 -9606 100216356 LOC100216356 - - - X Xq methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria pseudogene pseudo - - - - 20121230 -9606 100216466 DNM1P43 - DNM1DN11-10|DNM1DN11@ HGNC:35193 15 15q25.2 DNM1 pseudogene 43 pseudo DNM1P43 DNM1 pseudogene 43 O - 20121209 -9606 100216479 LOC100216479 - - - 2 2q21.1 uncharacterized LOC100216479 miscRNA - - - - 20121230 -9606 100216483 DEL18Q - - MIM:601808 18 18q Chromosome 18q deletion syndrome unknown - - - - 20120622 -9606 100216484 NRCLP4 - - MIM:612417 22 22q13 Narcolepsy 4 unknown - - - - 20120622 -9606 100216487 LOC100216487 - - - 4 4q31.23 akirin 2 pseudogene pseudo - - - - 20121230 -9606 100216488 LOC100216488 - - - 1 1q44 akirin 2 pseudogene pseudo - - - - 20121230 -9606 100216505 DNM1P24 - DNM1DN15-1|DNM1DN15@ HGNC:35171 Y Yq11.223 DNM1 pseudogene 24 pseudo DNM1P24 DNM1 pseudogene 24 O - 20121209 -9606 100216506 DNM1P25 - DNM1DN15-3|DNM1DN15@ HGNC:35172 Y Yq11.223 DNM1 pseudogene 25 pseudo DNM1P25 DNM1 pseudogene 25 O - 20121209 -9606 100216507 DNM1P26 - DNM1DN16-1|DNM1DN16@ HGNC:35173 Y Yq11.23 DNM1 pseudogene 26 pseudo DNM1P26 DNM1 pseudogene 26 O - 20121209 -9606 100216514 DNM1P27 - DNM1DN16-3|DNM1DN16@ HGNC:35174 Y Yq11.23 DNM1 pseudogene 27 pseudo DNM1P27 DNM1 pseudogene 27 O - 20121209 -9606 100216515 DNM1P36 - DNM1DN8-3|DNM1DN8@ HGNC:35186 15 15q25.2 DNM1 pseudogene 36 pseudo DNM1P36 DNM1 pseudogene 36 O - 20121209 -9606 100216516 DNM1P37 - DNM1DN10-1|DNM1DN10@ HGNC:35187 15 15q25.1 DNM1 pseudogene 37 pseudo DNM1P37 DNM1 pseudogene 37 O - 20121230 -9606 100216517 DNM1P38 - DNM1DN10-2|DNM1DN10@ HGNC:35188 15 15q25.2 DNM1 pseudogene 38 pseudo DNM1P38 DNM1 pseudogene 38 O - 20121209 -9606 100216518 DNM1P39 - DNM1DN11-3|DNM1DN11@ HGNC:35189 15 15q25.2 DNM1 pseudogene 39 pseudo DNM1P39 DNM1 pseudogene 39 O - 20121209 -9606 100216541 DNM1P42 - DNM1DN11-8|DNM1DN11@ HGNC:35192 15 15q25.2 DNM1 pseudogene 42 pseudo DNM1P42 DNM1 pseudogene 42 O - 20121230 -9606 100216542 DNM1P45 - DNM1DN12-2|DNM1DN12@ HGNC:35195 15 15q25.3 DNM1 pseudogene 45 pseudo DNM1P45 DNM1 pseudogene 45 O - 20121230 -9606 100216544 DNM1P47 - DNM1DN14-3|DNM1DN14@ HGNC:35200 15 15q26.3 DNM1 pseudogene 47 pseudo DNM1P47 DNM1 pseudogene 47 O - 20121230 -9606 100216545 LOC100216545 - - - 7 7q22.3 uncharacterized LOC100216545 miscRNA - - - - 20121230 -9606 100216546 LOC100216546 - - - 7 7q22.1 uncharacterized LOC100216546 miscRNA - - - - 20121230 -9606 100217367 LOC100217367 - - - X Xp22.11 chromosome 11 open reading frame 73 pseudogene pseudo - - - - 20121230 -9606 100217370 DEL1Q21 - C1DELq21 MIM:612474 1 1q21.1 Chromosome 1q21.1 deletion syndrome unknown - - - - 20120622 -9606 100217371 DUP1Q21 - C1DUPq21 MIM:612475 1 1q21.1 Chromosome 1q21.1 duplication syndrome unknown - - - - 20120622 -9606 100217387 AGA3 - - MIM:612421 20 20p11.22 Alopecia, androgenetic, 3 unknown - - - - 20120622 -9606 100233146 LOC100233146 - - - 7 7q21.3 histidine triad nucleotide binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100233147 ARHI1 - - MIM:612448 8 8q24.13-q24.22 Age-related hearing impairment 1 unknown - - - - 20120622 -9606 100233156 LOC100233156 - - - 4 4p16.3 tektin 4 pseudogene pseudo - - - - 20121230 -9606 100233157 BMIQ13 - - MIM:612459 2 2q14.1 Body mass index QTL13 unknown - - - - 20120622 -9606 100233158 BMIQ14 - - MIM:612460 16 16q12.2 Body mass index QTL14 unknown - - - - 20120622 -9606 100233159 WAGRO - DEL11p14p12 MIM:612469 11 11p13-p12 WAGRO syndrome unknown - - - - 20120622 -9606 100233198 LOC100233198 - - - 9 9p13.2 thioredoxin-related transmembrane protein 2 pseudogene pseudo - - - - 20121230 -9606 100233209 PCED1B-AS1 - - HGNC:44166 12 12q13.11 PCED1B antisense RNA 1 miscRNA PCED1B-AS1 PCED1B antisense RNA 1 O - 20121230 -9606 100233226 MCI2 - - MIM:608557 13 13q12 Myocardial infarction, susceptiblity to, 2 unknown - - - - 20120622 -9606 100233227 SLI4 - - MIM:612514 7 7q35-q36 Specific language impairment 4 unknown - - - - 20120622 -9606 100240702 PLSA1 - PLSA MIM:611637 4 4p16 Primary lateral sclerosis, adult, 1 unknown - - - - 20120622 -9606 100240707 GAPDHP42 - - HGNC:37799 6 6q13 glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 pseudo GAPDHP42 glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 O - 20121230 -9606 100240708 GAPDHP43 - - HGNC:37800 15 15q15.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 43 pseudo GAPDHP43 glyceraldehyde 3 phosphate dehydrogenase pseudogene 43 O - 20121230 -9606 100240709 GAPDHP44 - - HGNC:37801 12 12q14.2 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 pseudo GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 O - 20121230 -9606 100240710 GAPDHP45 - - HGNC:37802 10 10p13 glyceraldehyde 3 phosphate dehydrogenase pseudogene 45 pseudo GAPDHP45 glyceraldehyde 3 phosphate dehydrogenase pseudogene 45 O - 20121230 -9606 100240711 GAPDHP46 - - HGNC:37804 1 1p22.1 glyceraldehyde 3 phosphate dehydrogenase pseudogene 46 pseudo GAPDHP46 glyceraldehyde 3 phosphate dehydrogenase pseudogene 46 O - 20121230 -9606 100240712 GAPDHP47 - - HGNC:37803 3 3q24 glyceraldehyde 3 phosphate dehydrogenase pseudogene 47 pseudo GAPDHP47 glyceraldehyde 3 phosphate dehydrogenase pseudogene 47 O - 20121230 -9606 100240713 GAPDHP48 - - HGNC:37805 2 2p25.3 glyceraldehyde 3 phosphate dehydrogenase pseudogene 48 pseudo GAPDHP48 glyceraldehyde 3 phosphate dehydrogenase pseudogene 48 O - 20121230 -9606 100240714 LOC100240714 - - - 6 6q25.1 multimerin 2 pseudogene pseudo - - - - 20121230 -9606 100240728 LOC100240728 hCG_2038692 - - 7 - uncharacterized LOC100240728 unknown - - - - 20120508 -9606 100240730 DUP7Q11.23 - C7DUPq11.23 MIM:609757 7 7q11.23 Chromosome 7q11.23 duplication syndrome unknown - - - - 20120622 -9606 100240731 DEL15Q15.3 - C15DELq15.3 MIM:611102 15 15q15.3 Deafness and male infertility unknown - - - - 20120622 -9606 100240732 IBD22 - - MIM:612380 17 17q21.2 Inflammatory bowel disease-22 unknown - - - - 20120622 -9606 100240733 IBD23 - - MIM:612381 1 1q32 Inflammatory bowel disease-23 unknown - - - - 20120622 -9606 100240734 LOC100240734 - - - 12 12q13.13 uncharacterized LOC100240734 miscRNA - - - - 20121230 -9606 100240735 LOC100240735 - - - 12 12q13.13 uncharacterized LOC100240735 miscRNA - - - - 20121230 -9606 100240736 DEL11P15P14 - C11DELp15p14 MIM:606528 11 11p15-p14 Chromosome 11p15-p14 deletion syndrome unknown - - - - 20120622 -9606 100240737 DEL1P36 - C1DELp36 MIM:607872 1 1p36 Chromosome 1p36 deletion syndrome unknown - - - - 20120622 -9606 100240738 DUP22Q11.2 - - MIM:608363 22 22q11.2 Chromosome 22q11.2 microduplication syndrome unknown - - - - 20120902 -9606 100240739 DUP18PDEL18Q - DUP81qDEL18p MIM:609334 18 18q22 Chromosome 18 pericentric inversion unknown - - - - 20120622 -9606 100240740 DEL2P16.1-P15 - C2DELp161-p15 MIM:612513 2 2p16.1-p15 Chromosome 2p16.1-p15 deletion syndrome unknown - - - - 20120622 -9606 100240747 DEL18P - C18DELp MIM:146390 18 18p Chromosome 18p deletion syndrome unknown - - - - 20120622 -9606 100240748 DEL9P - C9DELp MIM:158170 9 9p Chromosome 9p deletion syndrome unknown - - - - 20120902 -9606 100240749 LOC100240749 - - - 5 5p34 tubulin, epsilon 1 pseudogene pseudo - - - - 20121230 -9606 100268168 LOC100268168 - - - 5 5q35.1 uncharacterized LOC100268168 miscRNA - - - - 20121230 -9606 100270639 IHPS5 - - MIM:612525 16 16q24.3 Pyloric stenosis, infantile hypertrophic, 5 unknown - - - - 20120622 -9606 100270641 MYP16 - - HGNC:35441|MIM:612554 5 5p15.33-p15.2 myopia 16 unknown MYP16 myopia 16 O - 20120622 -9606 100270642 CLLS3 - - MIM:612557 9 9q34.1 Leukemia, chronic lymphocytic, susceptibility to, 3 unknown - - - - 20120622 -9606 100270643 CLLS4 - - MIM:612558 6 6p25 Leukemia, chronic lymphocytic susceptibility to, 4 unknown - - - - 20120622 -9606 100270644 CLLS5 - - MIM:612559 11 11q24.1 Leukemia, chronic lymphocytic susceptiblity to, 5 unknown - - - - 20120622 -9606 100270647 LOC100270647 - - - 5 5p15.1 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene pseudo - - - - 20121230 -9606 100270648 MKI67IPP3 - - HGNC:44951 12 12p13 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 3 pseudo MKI67IPP3 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 3 O - 20121230 -9606 100270670 LOC100270670 - - - 1 1q21 chloride channel, nucleotide-sensitive, 1A pseudogene pseudo - - - - 20121230 -9606 100270673 FABP5P12 - FABP5L12 HGNC:31067 4 4q32.1 fatty acid binding protein 5 pseudogene 12 pseudo FABP5P12 fatty acid binding protein 5 pseudogene 12 O - 20121230 -9606 100270679 LOC100270679 - - - 20 20p11.22 uncharacterized LOC100270679 miscRNA - - - - 20121230 -9606 100270680 LOC100270680 - - - 8 8q24 uncharacterized LOC100270680 unknown - - - - 20120622 -9606 100270709 FTH1P27 - - HGNC:39091 X Xp21.1 ferritin, heavy polypeptide 1 pseudogene 27 pseudo FTH1P27 ferritin, heavy polypeptide 1 pseudogene 27 O - 20121230 -9606 100270746 LOC100270746 - - - 6 6p22.2 uncharacterized LOC100270746 miscRNA - - - - 20121230 -9606 100270753 RPL21P112 - RPL21_45_1329 HGNC:36526 13 13q32.1 ribosomal protein L21 pseudogene 112 pseudo RPL21P112 ribosomal protein L21 pseudogene 112 O - 20121230 -9606 100270754 RPL7AP72 RP1-30E17.1 RPL7A_34_1809 HGNC:36442 X Xq25 ribosomal protein L7a pseudogene 72 pseudo RPL7AP72 ribosomal protein L7a pseudogene 72 O - 20121230 -9606 100270755 RPSAP63 RP3-417G15.3 RPSA_33_1813 HGNC:35581 X Xq26.2 ribosomal protein SA pseudogene 63 pseudo RPSAP63 ribosomal protein SA pseudogene 63 O - 20121230 -9606 100270790 LOC100270790 - - - 7 7p12.2 guanine nucleotide binding protein-like 2 (nucleolar) pseudogene pseudo - - - - 20121230 -9606 100270794 STQTL10 - - MIM:612221 3 3q23 Stature QTL 10 unknown - - - - 20120622 -9606 100270795 STQTL11 - - MIM:612223 7 7q21 Stature QTL 11 unknown - - - - 20120622 -9606 100270796 STQTL13 - - MIM:612226 4 4p15.3 Stature QTL 13 unknown - - - - 20120622 -9606 100270797 STQTL14 - - MIM:612228 20 20q11.22 Stature QTL 14 unknown - - - - 20120622 -9606 100270798 IBD24 - - MIM:612566 20 20q13 Inflammatory bowel disease-24 unknown - - - - 20120622 -9606 100270799 IBD25 - - MIM:612567 - - Inflammatory bowel disease-25 unknown - - - - 20120622 -9606 100270800 SHFLD3 - - MIM:612576 17 17p13.3-p13.1 Split-hand/foot malformation with long bone deficiency 3 unknown - - - - 20120622 -9606 100270801 STQTL15 - - MIM:612578 8 8q21.13 Stature QTL 15 unknown - - - - 20120622 -9606 100270802 STQTL16 - - MIM:612579 15 15q22.32 Stature QTL 16 unknown - - - - 20120622 -9606 100270803 DEL6PTER - C6DELpter MIM:612582 6 6pter-p24 Chromosome 6pter deletion syndrome unknown - - - - 20120622 -9606 100270804 LOC100270804 - - - 20 20p11.23 uncharacterized LOC100270804 miscRNA - - - - 20121230 -9606 100270823 RPL7P11 - RPL7_1_6 HGNC:35667 1 1p36.23 ribosomal protein L7 pseudogene 11 pseudo RPL7P11 ribosomal protein L7 pseudogene 11 O - 20121230 -9606 100270825 RPL9P12 - RPL9_1_50 HGNC:36728 1 1p32.3 ribosomal protein L9 pseudogene 12 pseudo RPL9P12 ribosomal protein L9 pseudogene 12 O - 20121230 -9606 100270826 RPS2P13 - RPS2_1_34 HGNC:36021 1 1p33 ribosomal protein S2 pseudogene 13 pseudo RPS2P13 ribosomal protein S2 pseudogene 13 O - 20121230 -9606 100270827 RPS2P14 - RPS2_2_88 HGNC:36389 1 1p13 ribosomal protein S2 pseudogene 14 pseudo RPS2P14 ribosomal protein S2 pseudogene 14 O - 20121230 -9606 100270828 RPL37P9 - RPL37_1_4 HGNC:35688 1 1p36.31-p36.23 ribosomal protein L37 pseudogene 9 pseudo RPL37P9 ribosomal protein L37 pseudogene 9 O - 20121230 -9606 100270829 RPL39P12 - RPL39_1_3 HGNC:36166 1 1p36.33 ribosomal protein L39 pseudogene 12 pseudo RPL39P12 ribosomal protein L39 pseudogene 12 O - 20121230 -9606 100270832 RPL5P9 - RPL5_3_263 HGNC:36557 2 2q13 ribosomal protein L5 pseudogene 9 pseudo RPL5P9 ribosomal protein L5 pseudogene 9 O - 20121230 -9606 100270833 RPL5P12 - RPL5_4_502 HGNC:36221 4 4q22.3-q23 ribosomal protein L5 pseudogene 12 pseudo RPL5P12 ribosomal protein L5 pseudogene 12 O - 20121230 -9606 100270834 RPL5P13 - RPL5_5_523 HGNC:37023 4 4q31.21 ribosomal protein L5 pseudogene 13 pseudo RPL5P13 ribosomal protein L5 pseudogene 13 O - 20121230 -9606 100270835 RPL5P14 - RPL5_5_550 HGNC:35924 5 5p13.3 ribosomal protein L5 pseudogene 14 pseudo RPL5P14 ribosomal protein L5 pseudogene 14 O - 20121230 -9606 100270836 RPL5P15 - RPL5_6_566 HGNC:36769 5 5q13 ribosomal protein L5 pseudogene 15 pseudo RPL5P15 ribosomal protein L5 pseudogene 15 O - 20121230 -9606 100270837 RPL5P16 - RPL5_7_588 HGNC:36009 5 5q14.2 ribosomal protein L5 pseudogene 16 pseudo RPL5P16 ribosomal protein L5 pseudogene 16 O - 20121230 -9606 100270838 RPL5P21 - RPL5_7_753 HGNC:37029 6 6q22.33 ribosomal protein L5 pseudogene 21 pseudo RPL5P21 ribosomal protein L5 pseudogene 21 O - 20121230 -9606 100270839 RPL5P17 - RPL5_8_591 HGNC:36605 5 5q14.3 ribosomal protein L5 pseudogene 17 pseudo RPL5P17 ribosomal protein L5 pseudogene 17 O - 20121230 -9606 100270840 RPL5P23 - RPL5_8_899 HGNC:36553 8 8p12 ribosomal protein L5 pseudogene 23 pseudo RPL5P23 ribosomal protein L5 pseudogene 23 O - 20121230 -9606 100270841 RPL5P24 - RPL5_9_935 HGNC:35828 8 8q22.3 ribosomal protein L5 pseudogene 24 pseudo RPL5P24 ribosomal protein L5 pseudogene 24 O - 20121230 -9606 100270843 RPL6P15 - RPL6_3_613 HGNC:36903 5 5q31.1 ribosomal protein L6 pseudogene 15 pseudo RPL6P15 ribosomal protein L6 pseudogene 15 O - 20121230 -9606 100270844 RPL6P5 - RPL6_4_280 HGNC:36199 2 2q22.3 ribosomal protein L6 pseudogene 5 pseudo RPL6P5 ribosomal protein L6 pseudogene 5 O - 20121230 -9606 100270845 RPL6P6 - RPL6_5_321 HGNC:36673 2 2q34 ribosomal protein L6 pseudogene 6 pseudo RPL6P6 ribosomal protein L6 pseudogene 6 O - 20121230 -9606 100270846 RPL6P21 - RPL6_5_786 HGNC:35994 7 7p21.2 ribosomal protein L6 pseudogene 21 pseudo RPL6P21 ribosomal protein L6 pseudogene 21 O - 20121230 -9606 100270847 RPL6P9 - RPL6_6_412 HGNC:36484 3 3q22-q24 ribosomal protein L6 pseudogene 9 pseudo RPL6P9 ribosomal protein L6 pseudogene 9 O - 20121230 -9606 100270848 RPL6P7 - RPL6_7_423 HGNC:35801 3 3q25.31 ribosomal protein L6 pseudogene 7 pseudo RPL6P7 ribosomal protein L6 pseudogene 7 O - 20121230 -9606 100270850 RPL7P15 - RPL7_4_398 HGNC:36740 3 3q21.1-q21.2 ribosomal protein L7 pseudogene 15 pseudo RPL7P15 ribosomal protein L7 pseudogene 15 O - 20121230 -9606 100270851 RPL7P17 - RPL7_6_493 HGNC:36116 4 4q21.1 ribosomal protein L7 pseudogene 17 pseudo RPL7P17 ribosomal protein L7 pseudogene 17 O - 20121230 -9606 100270852 RPL7P18 - RPL7_7_596 HGNC:36949 5 5q15 ribosomal protein L7 pseudogene 18 pseudo RPL7P18 ribosomal protein L7 pseudogene 18 O - 20121230 -9606 100270853 RPL7P19 - RPL7_9_617 HGNC:36268 5 5q31 ribosomal protein L7 pseudogene 19 pseudo RPL7P19 ribosomal protein L7 pseudogene 19 O - 20121230 -9606 100270854 RPL8P3 - RPL8_1_413 HGNC:36407 3 3q23 ribosomal protein L8 pseudogene 3 pseudo RPL8P3 ribosomal protein L8 pseudogene 3 O - 20121230 -9606 100270855 RPL9P10 - RPL9_2_176 HGNC:35686 1 1q42.2 ribosomal protein L9 pseudogene 10 pseudo RPL9P10 ribosomal protein L9 pseudogene 10 O - 20121230 -9606 100270856 RPL9P13 - RPL9_2_278 HGNC:36558 2 2q22.1 ribosomal protein L9 pseudogene 13 pseudo RPL9P13 ribosomal protein L9 pseudogene 13 O - 20121230 -9606 100270857 RPL9P15 - RPL9_4_422 HGNC:35539 3 3q25.2 ribosomal protein L9 pseudogene 15 pseudo RPL9P15 ribosomal protein L9 pseudogene 15 O - 20121230 -9606 100270858 RPS2P15 - RPS2_3_202 HGNC:36468 2 2p23 ribosomal protein S2 pseudogene 15 pseudo RPS2P15 ribosomal protein S2 pseudogene 15 O - 20121230 -9606 100270859 RPS2P19 - RPS2_4_428 HGNC:35786 3 3q25.33 ribosomal protein S2 pseudogene 19 pseudo RPS2P19 ribosomal protein S2 pseudogene 19 O - 20121230 -9606 100270860 RPS2P16 - RPS2_8_310 HGNC:36865 2 2q33.1 ribosomal protein S2 pseudogene 16 pseudo RPS2P16 ribosomal protein S2 pseudogene 16 O - 20121230 -9606 100270861 RPS2P22 - RPS2_9_556 HGNC:35506 5 5p12 ribosomal protein S2 pseudogene 22 pseudo RPS2P22 ribosomal protein S2 pseudogene 22 O - 20121230 -9606 100270862 RPS3P4 - RPS3_1_652 HGNC:36616 6 6p25 ribosomal protein S3 pseudogene 4 pseudo RPS3P4 ribosomal protein S3 pseudogene 4 O - 20121230 -9606 100270864 RPS6P2 - RPS6_1_301 HGNC:36446 2 2q31.2 ribosomal protein S6 pseudogene 2 pseudo RPS6P2 ribosomal protein S6 pseudogene 2 O - 20121230 -9606 100270865 RPS6P10 - RPS6_4_967 HGNC:36730 9 9p22.1 ribosomal protein S6 pseudogene 10 pseudo RPS6P10 ribosomal protein S6 pseudogene 10 O - 20121230 -9606 100270866 RPS6P11 - RPS6_5_956 HGNC:36270 9 9p24 ribosomal protein S6 pseudogene 11 pseudo RPS6P11 ribosomal protein S6 pseudogene 11 O - 20121230 -9606 100270867 RPS6P12 - RPS6_5_991 HGNC:36375 9 9q21.32 ribosomal protein S6 pseudogene 12 pseudo RPS6P12 ribosomal protein S6 pseudogene 12 O - 20121230 -9606 100270868 RPS7P2 - RPS7_1_102 HGNC:36079 1 1q21 ribosomal protein S7 pseudogene 2 pseudo RPS7P2 ribosomal protein S7 pseudogene 2 O - 20121230 -9606 100270869 RPS7P6 - RPS7_3_462 HGNC:36334 4 4p15.31 ribosomal protein S7 pseudogene 6 pseudo RPS7P6 ribosomal protein S7 pseudogene 6 O - 20121230 -9606 100270870 RPS7P7 - RPS7_3_472 HGNC:35690 4 4p13 ribosomal protein S7 pseudogene 7 pseudo RPS7P7 ribosomal protein S7 pseudogene 7 O - 20121230 -9606 100270871 RPS8P6 - RPS8_1_339 HGNC:36947 3 3p26.1 ribosomal protein S8 pseudogene 6 pseudo RPS8P6 ribosomal protein S8 pseudogene 6 O - 20121230 -9606 100270872 RPSAP16 - RPSA_1_135 HGNC:35478 1 1q24.2 ribosomal protein SA pseudogene 16 pseudo RPSAP16 ribosomal protein SA pseudogene 16 O - 20121230 -9606 100270873 RPSAP17 - RPSA_3_103 HGNC:35707 1 1q21 ribosomal protein SA pseudogene 17 pseudo RPSAP17 ribosomal protein SA pseudogene 17 O - 20121230 -9606 100270874 RPSAP22 - RPSA_5_248 HGNC:36435 2 2p12 ribosomal protein SA pseudogene 22 pseudo RPSAP22 ribosomal protein SA pseudogene 22 O - 20121230 -9606 100270875 RPSAP23 - RPSA_5_268 HGNC:36742 2 2q14.1 ribosomal protein SA pseudogene 23 pseudo RPSAP23 ribosomal protein SA pseudogene 23 O - 20121230 -9606 100270876 RPSAP34 - RPSA_8_506 HGNC:36643 4 4q25 ribosomal protein SA pseudogene 34 pseudo RPSAP34 ribosomal protein SA pseudogene 34 O - 20121230 -9606 100270877 RPL21P21 - RPL21_1_11 HGNC:35728 1 1p36.3 ribosomal protein L21 pseudogene 21 pseudo RPL21P21 ribosomal protein L21 pseudogene 21 O - 20121230 -9606 100270878 RPL21P22 - RPL21_2_29 HGNC:36550 1 1p35.2 ribosomal protein L21 pseudogene 22 pseudo RPL21P22 ribosomal protein L21 pseudogene 22 O - 20121230 -9606 100270879 RPL21P23 - RPL21_2_54 HGNC:36205 1 1pter-p22.1 ribosomal protein L21 pseudogene 23 pseudo RPL21P23 ribosomal protein L21 pseudogene 23 O - 20121230 -9606 100270880 RPL21P24 - RPL21_4_45 HGNC:35702 1 1p33 ribosomal protein L21 pseudogene 24 pseudo RPL21P24 ribosomal protein L21 pseudogene 24 O - 20121230 -9606 100270881 RPL21P25 - RPL21_5_46 HGNC:36785 1 1p33 ribosomal protein L21 pseudogene 25 pseudo RPL21P25 ribosomal protein L21 pseudogene 25 O - 20121230 -9606 100270882 RPL21P26 - RPL21_6_74 HGNC:35910 1 1p22-p21 ribosomal protein L21 pseudogene 26 pseudo RPL21P26 ribosomal protein L21 pseudogene 26 O - 20121230 -9606 100270883 RPL26P7 - RPL26_1_10 HGNC:37030 1 1p36.2 ribosomal protein L26 pseudogene 7 pseudo RPL26P7 ribosomal protein L26 pseudogene 7 O - 20121230 -9606 100270884 RPL26P8 - RPL26_1_22 HGNC:36192 1 1p36.11 ribosomal protein L26 pseudogene 8 pseudo RPL26P8 ribosomal protein L26 pseudogene 8 O - 20121230 -9606 100270885 RPL26P9 - RPL26_2_76 HGNC:36180 1 1p22 ribosomal protein L26 pseudogene 9 pseudo RPL26P9 ribosomal protein L26 pseudogene 9 O - 20121230 -9606 100270886 RPL26P10 - RPL26_3_90 HGNC:36323 1 1p13.1 ribosomal protein L26 pseudogene 10 pseudo RPL26P10 ribosomal protein L26 pseudogene 10 O - 20121230 -9606 100270887 RPL31P12 - RPL31_1_62 HGNC:35546 1 1p31.1 ribosomal protein L31 pseudogene 12 pseudo RPL31P12 ribosomal protein L31 pseudogene 12 O - 20121230 -9606 100270888 RPL32P6 - RPL32_1_26 HGNC:36655 1 1p36.1 ribosomal protein L32 pseudogene 6 pseudo RPL32P6 ribosomal protein L32 pseudogene 6 O - 20121230 -9606 100270889 RPL34P4 - RPL34_1_24 HGNC:36665 1 1p36 ribosomal protein L34 pseudogene 4 pseudo RPL34P4 ribosomal protein L34 pseudogene 4 O - 20121230 -9606 100270890 RPL37P7 - RPL37_1_52 HGNC:36499 1 1p32.3 ribosomal protein L37 pseudogene 7 pseudo RPL37P7 ribosomal protein L37 pseudogene 7 O - 20121230 -9606 100270891 RPL39P6 - RPL39_1_12 HGNC:35803 1 1p36.2 ribosomal protein L39 pseudogene 6 pseudo RPL39P6 ribosomal protein L39 pseudogene 6 O - 20121230 -9606 100270892 RPL39P7 - RPL39_2_23 HGNC:36651 1 1p36.11 ribosomal protein L39 pseudogene 7 pseudo RPL39P7 ribosomal protein L39 pseudogene 7 O - 20121230 -9606 100270893 RPL39P8 - RPL39_2_85 HGNC:36329 1 1p13.2 ribosomal protein L39 pseudogene 8 pseudo RPL39P8 ribosomal protein L39 pseudogene 8 O - 20121230 -9606 100270894 RPL39P9 - RPL39_4_77 HGNC:35580 1 1p21 ribosomal protein L39 pseudogene 9 pseudo RPL39P9 ribosomal protein L39 pseudogene 9 O - 20121230 -9606 100270895 RPL7AP15 - RPL7A_1_95 HGNC:36873 1 1q12 ribosomal protein L7a pseudogene 15 pseudo RPL7AP15 ribosomal protein L7a pseudogene 15 O - 20121230 -9606 100270896 RPL7AP16 - RPL7A_2_43 HGNC:35898 1 1p34.1 ribosomal protein L7a pseudogene 16 pseudo RPL7AP16 ribosomal protein L7a pseudogene 16 O - 20121230 -9606 100270897 RPL7AP17 - RPL7A_3_78 HGNC:36501 1 1p21.2 ribosomal protein L7a pseudogene 17 pseudo RPL7AP17 ribosomal protein L7a pseudogene 17 O - 20121230 -9606 100270898 RPS11P3 - RPS11_1_99 HGNC:35870 1 1q21 ribosomal protein S11 pseudogene 3 pseudo RPS11P3 ribosomal protein S11 pseudogene 3 O - 20121230 -9606 100270899 RPS20P5 - RPS20_1_55 HGNC:36367 1 1p32-p31 ribosomal protein S20 pseudogene 5 pseudo RPS20P5 ribosomal protein S20 pseudogene 5 O - 20121230 -9606 100270900 RPS20P6 - RPS20_1_80 HGNC:35629 1 1p21 ribosomal protein S20 pseudogene 6 pseudo RPS20P6 ribosomal protein S20 pseudogene 6 O - 20121230 -9606 100270901 RPS20P7 - RPS20_2_68 HGNC:35911 1 1p31.1 ribosomal protein S20 pseudogene 7 pseudo RPS20P7 ribosomal protein S20 pseudogene 7 O - 20121230 -9606 100270902 RPS26P14 - RPS26_1_49 HGNC:36992 1 1p32.3 ribosomal protein S26 pseudogene 14 pseudo RPS26P14 ribosomal protein S26 pseudogene 14 O - 20121230 -9606 100270903 RPS29P6 - RPS29_1_32 HGNC:35718 1 1p34.3 ribosomal protein S29 pseudogene 6 pseudo RPS29P6 ribosomal protein S29 pseudogene 6 O - 20121230 -9606 100270904 RPS3AP11 - RPS3A_1_40 HGNC:36825 1 1p34.2 ribosomal protein S3a pseudogene 11 pseudo RPS3AP11 ribosomal protein S3a pseudogene 11 O - 20121230 -9606 100270905 RPS3AP12 - RPS3A_1_92 HGNC:35527 1 1p13.3-p13.1 ribosomal protein S3a pseudogene 12 pseudo RPS3AP12 ribosomal protein S3a pseudogene 12 O - 20121230 -9606 100270906 RPL5P19 - RPL5_10_724 HGNC:36604 6 6q15 ribosomal protein L5 pseudogene 19 pseudo RPL5P19 ribosomal protein L5 pseudogene 19 O - 20121230 -9606 100270907 RPL6P12 - RPL6_11_535 HGNC:35681 4 4q32.3-q33 ribosomal protein L6 pseudogene 12 pseudo RPL6P12 ribosomal protein L6 pseudogene 12 O - 20121230 -9606 100270908 RPL7P30 - RPL7_13_818 HGNC:36151 7 7q21.11 ribosomal protein L7 pseudogene 30 pseudo RPL7P30 ribosomal protein L7 pseudogene 30 O - 20121230 -9606 100270909 RPL7P31 - RPL7_14_803 HGNC:36988 7 7p14.3 ribosomal protein L7 pseudogene 31 pseudo RPL7P31 ribosomal protein L7 pseudogene 31 O - 20121230 -9606 100270910 RPS2P23 - RPS2_10_570 HGNC:35760 5 5q12 ribosomal protein S2 pseudogene 23 pseudo RPS2P23 ribosomal protein S2 pseudogene 23 O - 20121230 -9606 100270911 RPS2P30 - RPS2_10_800 HGNC:36987 7 7p15.1 ribosomal protein S2 pseudogene 30 pseudo RPS2P30 ribosomal protein S2 pseudogene 30 O - 20121230 -9606 100270912 RPS2P24 - RPS2_11_579 HGNC:35887 5 5q14.1 ribosomal protein S2 pseudogene 24 pseudo RPS2P24 ribosomal protein S2 pseudogene 24 O - 20121230 -9606 100270913 RPS2P25 - RPS2_12_592 HGNC:36410 5 5q14.3 ribosomal protein S2 pseudogene 25 pseudo RPS2P25 ribosomal protein S2 pseudogene 25 O - 20121230 -9606 100270914 RPS7P12 - RPS7_6_1816 HGNC:36147 X Xq26 ribosomal protein S7 pseudogene 12 pseudo RPS7P12 ribosomal protein S7 pseudogene 12 O - 20121230 -9606 100270915 RPSAP37 - RPSA_10_610 HGNC:35844 5 5q23.2 ribosomal protein SA pseudogene 37 pseudo RPSAP37 ribosomal protein SA pseudogene 37 O - 20121230 -9606 100270916 RPSAP35 - RPSA_13_513 HGNC:36447 4 4q26 ribosomal protein SA pseudogene 35 pseudo RPSAP35 ribosomal protein SA pseudogene 35 O - 20121230 -9606 100270917 RPSAP40 - RPSA_13_766 HGNC:36828 6 6q25.1 ribosomal protein SA pseudogene 40 pseudo RPSAP40 ribosomal protein SA pseudogene 40 O - 20121230 -9606 100270918 RPSAP41 - RPSA_17_711 HGNC:36663 6 6q13 ribosomal protein SA pseudogene 41 pseudo RPSAP41 ribosomal protein SA pseudogene 41 O - 20121230 -9606 100270919 RPSAP42 - RPSA_18_761 HGNC:36265 6 6q23.3 ribosomal protein SA pseudogene 42 pseudo RPSAP42 ribosomal protein SA pseudogene 42 O - 20121230 -9606 100270920 RPL12P15 - RPL12_1_272 HGNC:36619 2 2q14.3 ribosomal protein L12 pseudogene 15 pseudo RPL12P15 ribosomal protein L12 pseudogene 15 O - 20121230 -9606 100270921 RPL12P21 - RPL12_3_619 HGNC:36845 5 5q31 ribosomal protein L12 pseudogene 21 pseudo RPL12P21 ribosomal protein L12 pseudogene 21 O - 20121230 -9606 100270922 RPL12P22 - RPL12_4_640 HGNC:35762 5 5q35.2 ribosomal protein L12 pseudogene 22 pseudo RPL12P22 ribosomal protein L12 pseudogene 22 O - 20121230 -9606 100270923 RPL12P20 - RPL12_5_471 HGNC:36968 4 4p13 ribosomal protein L12 pseudogene 20 pseudo RPL12P20 ribosomal protein L12 pseudogene 20 O - 20121230 -9606 100270924 RPL12P24 - RPL12_6_940 HGNC:35952 8 8q23 ribosomal protein L12 pseudogene 24 pseudo RPL12P24 ribosomal protein L12 pseudogene 24 O - 20121230 -9606 100270925 RPL12P23 - RPL12_7_777 HGNC:36408 6 6q27 ribosomal protein L12 pseudogene 23 pseudo RPL12P23 ribosomal protein L12 pseudogene 23 O - 20121230 -9606 100270926 RPL12P25 - RPL12_9_954 HGNC:37008 9 9p24.3 ribosomal protein L12 pseudogene 25 pseudo RPL12P25 ribosomal protein L12 pseudogene 25 O - 20121230 -9606 100270927 RPL13P9 - RPL13_1_589 HGNC:36587 5 5q13-q14 ribosomal protein L13 pseudogene 9 pseudo RPL13P9 ribosomal protein L13 pseudogene 9 O - 20121230 -9606 100270928 RPL13P8 - RPL13_2_391 HGNC:35513 3 3q13.13 ribosomal protein L13 pseudogene 8 pseudo RPL13P8 ribosomal protein L13 pseudogene 8 O - 20121230 -9606 100270930 RPL14P2 - RPL14_1_377 HGNC:35962 3 3p14.2 ribosomal protein L14 pseudogene 2 pseudo RPL14P2 ribosomal protein L14 pseudogene 2 O - 20121230 -9606 100270933 RPL15P6 - RPL15_1_425 HGNC:36185 3 3q25.32 ribosomal protein L15 pseudogene 6 pseudo RPL15P6 ribosomal protein L15 pseudogene 6 O - 20121230 -9606 100270934 RPL15P8 - RPL15_2_518 HGNC:36390 4 4q28.2 ribosomal protein L15 pseudogene 8 pseudo RPL15P8 ribosomal protein L15 pseudogene 8 O - 20121230 -9606 100270935 RPL15P9 - RPL15P10|RPL15_3_755 HGNC:36466 6 6q23.2 ribosomal protein L15 pseudogene 9 pseudo RPL15P9 ribosomal protein L15 pseudogene 9 O - 20121230 -9606 100270936 RPL17P10 - RPL17_2_309 HGNC:35838 2 2q31.3 ribosomal protein L17 pseudogene 10 pseudo RPL17P10 ribosomal protein L17 pseudogene 10 O - 20121230 -9606 100270937 RPL17P11 - RPL17_3_336 HGNC:36509 2 2q37 ribosomal protein L17 pseudogene 11 pseudo RPL17P11 ribosomal protein L17 pseudogene 11 O - 20121230 -9606 100270938 RPL17P12 - RPL17_6_281 HGNC:36779 2 2q22.3 ribosomal protein L17 pseudogene 12 pseudo RPL17P12 ribosomal protein L17 pseudogene 12 O - 20121230 -9606 100270939 RPL17P13 - RPL17_7_285 HGNC:36378 2 2q23.2 ribosomal protein L17 pseudogene 13 pseudo RPL17P13 ribosomal protein L17 pseudogene 13 O - 20121230 -9606 100270940 RPL17P28 - RPL17_7_858 HGNC:36055 7 7q34 ribosomal protein L17 pseudogene 28 pseudo RPL17P28 ribosomal protein L17 pseudogene 28 O - 20121230 -9606 100270941 RPL17P14 - RPL17_8_331 HGNC:35806 2 2q36.3 ribosomal protein L17 pseudogene 14 pseudo RPL17P14 ribosomal protein L17 pseudogene 14 O - 20121230 -9606 100270942 RPL17P32 - RPL17_8_939 HGNC:36492 8 8q23 ribosomal protein L17 pseudogene 32 pseudo RPL17P32 ribosomal protein L17 pseudogene 32 O - 20121230 -9606 100270943 RPL17P17 - RPL17_9_379 HGNC:35515 3 3p14.1 ribosomal protein L17 pseudogene 17 pseudo RPL17P17 ribosomal protein L17 pseudogene 17 O - 20121230 -9606 100270944 RPL18P5 - RPL18_3_852 HGNC:36425 7 7q33 ribosomal protein L18 pseudogene 5 pseudo RPL18P5 ribosomal protein L18 pseudogene 5 O - 20121230 -9606 100270945 RPL18P7 - RPL18_4_944 HGNC:35936 8 8q23.3 ribosomal protein L18 pseudogene 7 pseudo RPL18P7 ribosomal protein L18 pseudogene 7 O - 20121230 -9606 100270946 RPL19P6 - RPL19_2_411 HGNC:36795 3 3q23 ribosomal protein L19 pseudogene 6 pseudo RPL19P6 ribosomal protein L19 pseudogene 6 O - 20121230 -9606 100270948 RPL19P10 - RPL19_3_638 HGNC:36534 5 5q34 ribosomal protein L19 pseudogene 10 pseudo RPL19P10 ribosomal protein L19 pseudogene 10 O - 20121230 -9606 100270950 RPL19P11 - RPL19_6_547 HGNC:36953 5 5p13.3 ribosomal protein L19 pseudogene 11 pseudo RPL19P11 ribosomal protein L19 pseudogene 11 O - 20121230 -9606 100270951 RPL19P14 - RPL19_9_931 HGNC:35684 8 8q22.2 ribosomal protein L19 pseudogene 14 pseudo RPL19P14 ribosomal protein L19 pseudogene 14 O - 20121230 -9606 100270952 RPL21P27 - RPL21_3_112 HGNC:36371 1 1q23 ribosomal protein L21 pseudogene 27 pseudo RPL21P27 ribosomal protein L21 pseudogene 27 O - 20121230 -9606 100270953 RPL21P33 - RPL21_5_222 HGNC:36686 2 2p16.1 ribosomal protein L21 pseudogene 33 pseudo RPL21P33 ribosomal protein L21 pseudogene 33 O - 20121230 -9606 100270954 RPL21P34 - RPL21_6_274 HGNC:36529 2 2q21 ribosomal protein L21 pseudogene 34 pseudo RPL21P34 ribosomal protein L21 pseudogene 34 O - 20121230 -9606 100270955 RPL21P35 - RPL21_8_333 HGNC:36900 2 2q37.1 ribosomal protein L21 pseudogene 35 pseudo RPL21P35 ribosomal protein L21 pseudogene 35 O - 20121230 -9606 100270956 RPL21P36 - RPL21_9_206 HGNC:36128 2 2p21 ribosomal protein L21 pseudogene 36 pseudo RPL21P36 ribosomal protein L21 pseudogene 36 O - 20121230 -9606 100270957 RPL22P8 - RPL22_4_256 HGNC:36782 2 2q12 ribosomal protein L22 pseudogene 8 pseudo RPL22P8 ribosomal protein L22 pseudogene 8 O - 20121230 -9606 100270959 RPL22P16 - RPL22_6_780 HGNC:36536 7 7p22.1 ribosomal protein L22 pseudogene 16 pseudo RPL22P16 ribosomal protein L22 pseudogene 16 O - 20121230 -9606 100270960 RPL22P14 - RPL22_8_723 HGNC:35990 6 6q15 ribosomal protein L22 pseudogene 14 pseudo RPL22P14 ribosomal protein L22 pseudogene 14 O - 20121230 -9606 100270961 RPL23P4 - RPL23_2_327 HGNC:36678 2 2q35 ribosomal protein L23 pseudogene 4 pseudo RPL23P4 ribosomal protein L23 pseudogene 4 O - 20121230 -9606 100270962 RPL23P10 - RPL23_2_893 HGNC:36177 8 8p12 ribosomal protein L23 pseudogene 10 pseudo RPL23P10 ribosomal protein L23 pseudogene 10 O - 20121230 -9606 100270963 RPL24P7 - RPL24_2_348 HGNC:36862 3 3p24.3 ribosomal protein L24 pseudogene 7 pseudo RPL24P7 ribosomal protein L24 pseudogene 7 O - 20121230 -9606 100270964 RPL24P8 - RPL24_4_982 HGNC:36409 9 9q21.11 ribosomal protein L24 pseudogene 8 pseudo RPL24P8 ribosomal protein L24 pseudogene 8 O - 20121230 -9606 100270965 RPL26P15 - RPL26_2_213 HGNC:35512 2 2p21 ribosomal protein L26 pseudogene 15 pseudo RPL26P15 ribosomal protein L26 pseudogene 15 O - 20121230 -9606 100270966 RPL26P25 - RPL26_6_894 HGNC:36383 8 8p12 ribosomal protein L26 pseudogene 25 pseudo RPL26P25 ribosomal protein L26 pseudogene 25 O - 20121230 -9606 100270967 RPL26P26 - RPL26_7_907 HGNC:35693 8 8q12.1 ribosomal protein L26 pseudogene 26 pseudo RPL26P26 ribosomal protein L26 pseudogene 26 O - 20121230 -9606 100270968 RPL26P18 - RPL26_9_632 HGNC:36579 5 5q33.3 ribosomal protein L26 pseudogene 18 pseudo RPL26P18 ribosomal protein L26 pseudogene 18 O - 20121230 -9606 100270969 RPL27P5 - RPL27_2_231 HGNC:36120 2 2p13 ribosomal protein L27 pseudogene 5 pseudo RPL27P5 ribosomal protein L27 pseudogene 5 O - 20121230 -9606 100270970 RPL27P9 - RPL27_4_375 HGNC:36874 3 3p14.3 ribosomal protein L27 pseudogene 9 pseudo RPL27P9 ribosomal protein L27 pseudogene 9 O - 20121230 -9606 100270971 RPL28P2 - RPL28_1_335 HGNC:36234 2 2q37.1 ribosomal protein L28 pseudogene 2 pseudo RPL28P2 ribosomal protein L28 pseudogene 2 O - 20121230 -9606 100270972 RPL29P7 - RPL29_3_121 HGNC:36859 1 1q24.2 ribosomal protein L29 pseudogene 7 pseudo RPL29P7 ribosomal protein L29 pseudogene 7 O - 20121230 -9606 100270973 RPL29P10 - RPL29_3_370 HGNC:36054 3 3p21 ribosomal protein L29 pseudogene 10 pseudo RPL29P10 ribosomal protein L29 pseudogene 10 O - 20121230 -9606 100270974 RPL29P14 - RPL29_7_626 HGNC:36687 5 5q32 ribosomal protein L29 pseudogene 14 pseudo RPL29P14 ribosomal protein L29 pseudogene 14 O - 20121230 -9606 100270975 RPL30P1 - RPL30_1_127 HGNC:36642 1 1q25.1 ribosomal protein L30 pseudogene 1 pseudo RPL30P1 ribosomal protein L30 pseudogene 1 O - 20121230 -9606 100270976 RPL30P2 - RPL30_1_286 HGNC:35642 2 2q23.3 ribosomal protein L30 pseudogene 2 pseudo RPL30P2 ribosomal protein L30 pseudogene 2 O - 20121230 -9606 100270977 RPL30P3 - RPL30_2_193 HGNC:36380 2 2p25 ribosomal protein L30 pseudogene 3 pseudo RPL30P3 ribosomal protein L30 pseudogene 3 O - 20121230 -9606 100270978 RPL30P5 - RPL30_2_497 HGNC:36302 4 4q21.23 ribosomal protein L30 pseudogene 5 pseudo RPL30P5 ribosomal protein L30 pseudogene 5 O - 20121230 -9606 100270979 RPL30P7 - RPL30_3_541 HGNC:36402 5 5p15.2 ribosomal protein L30 pseudogene 7 pseudo RPL30P7 ribosomal protein L30 pseudogene 7 O - 20121230 -9606 100270980 RPL30P6 - RPL30_4_501 HGNC:37015 4 4q22.3 ribosomal protein L30 pseudogene 6 pseudo RPL30P6 ribosomal protein L30 pseudogene 6 O - 20121230 -9606 100270981 RPL30P9 - RPL30_5_882 HGNC:35763 8 8p22 ribosomal protein L30 pseudogene 9 pseudo RPL30P9 ribosomal protein L30 pseudogene 9 O - 20121230 -9606 100270982 RPL30P10 - RPL30_5_906 HGNC:36822 8 8q12.1 ribosomal protein L30 pseudogene 10 pseudo RPL30P10 ribosomal protein L30 pseudogene 10 O - 20121230 -9606 100270983 RPL31P13 - RPL31_2_164 HGNC:35598 1 1q32.3 ribosomal protein L31 pseudogene 13 pseudo RPL31P13 ribosomal protein L31 pseudogene 13 O - 20121230 -9606 100270984 RPL31P15 - RPL31_3_303 HGNC:36339 2 2qter ribosomal protein L31 pseudogene 15 pseudo RPL31P15 ribosomal protein L31 pseudogene 15 O - 20121230 -9606 100270985 RPL31P19 - RPL31_5_346 HGNC:35589 3 3p24.3 ribosomal protein L31 pseudogene 19 pseudo RPL31P19 ribosomal protein L31 pseudogene 19 O - 20121230 -9606 100270986 RPL31P20 - RPL31_6_349 HGNC:36303 3 3p24.2 ribosomal protein L31 pseudogene 20 pseudo RPL31P20 ribosomal protein L31 pseudogene 20 O - 20121230 -9606 100270987 RPL31P25 - RPL31_6_464 HGNC:36698 4 4p15.31 ribosomal protein L31 pseudogene 25 pseudo RPL31P25 ribosomal protein L31 pseudogene 25 O - 20121230 -9606 100270988 RPL31P21 - RPL31_8_410 HGNC:36245 3 3q23 ribosomal protein L31 pseudogene 21 pseudo RPL31P21 ribosomal protein L31 pseudogene 21 O - 20121230 -9606 100270989 RPL31P22 - RPL31_9_449 HGNC:36430 3 3q29 ribosomal protein L31 pseudogene 22 pseudo RPL31P22 ribosomal protein L31 pseudogene 22 O - 20121230 -9606 100270990 RPL31P29 - RPL31_9_773 HGNC:36647 6 6q25.2 ribosomal protein L31 pseudogene 29 pseudo RPL31P29 ribosomal protein L31 pseudogene 29 O - 20121230 -9606 100270991 RPL32P8 - RPL32_2_419 HGNC:36414 3 3q25 ribosomal protein L32 pseudogene 8 pseudo RPL32P8 ribosomal protein L32 pseudogene 8 O - 20121230 -9606 100270992 RPL32P9 - RPL32_3_420 HGNC:35481 3 3q25.1 ribosomal protein L32 pseudogene 9 pseudo RPL32P9 ribosomal protein L32 pseudogene 9 O - 20121230 -9606 100270993 RPL32P13 - RPL32_4_510 HGNC:35950 4 4q25 ribosomal protein L32 pseudogene 13 pseudo RPL32P13 ribosomal protein L32 pseudogene 13 O - 20121230 -9606 100270994 RPL32P14 - RPL32_5_546 HGNC:37038 5 5p14.3 ribosomal protein L32 pseudogene 14 pseudo RPL32P14 ribosomal protein L32 pseudogene 14 O - 20121230 -9606 100270995 RPL34P5 - RPL34_2_101 HGNC:36527 1 1q21 ribosomal protein L34 pseudogene 5 pseudo RPL34P5 ribosomal protein L34 pseudogene 5 O - 20121230 -9606 100270996 RPL34P12 - RPL34_2_514 HGNC:35845 4 4q26 ribosomal protein L34 pseudogene 12 pseudo RPL34P12 ribosomal protein L34 pseudogene 12 O - 20121230 -9606 100270997 RPL34P13 - RPL34_3_616 HGNC:36398 5 5q23 ribosomal protein L34 pseudogene 13 pseudo RPL34P13 ribosomal protein L34 pseudogene 13 O - 20121230 -9606 100270998 RPL34P6 - RPL34_4_146 HGNC:35810 1 1q32.1 ribosomal protein L34 pseudogene 6 pseudo RPL34P6 ribosomal protein L34 pseudogene 6 O - 20121230 -9606 100270999 RPL34P8 - RPL34_5_265 HGNC:36963 2 2q12.1 ribosomal protein L34 pseudogene 8 pseudo RPL34P8 ribosomal protein L34 pseudogene 8 O - 20121230 -9606 100271000 RPL34P15 - RPL34_5_775 HGNC:35965 6 6q26 ribosomal protein L34 pseudogene 15 pseudo RPL34P15 ribosomal protein L34 pseudogene 15 O - 20121230 -9606 100271001 RPL34P17 - RPL34_6_902 HGNC:36636 8 8q11.23 ribosomal protein L34 pseudogene 17 pseudo RPL34P17 ribosomal protein L34 pseudogene 17 O - 20121230 -9606 100271002 RPL34P9 - RPL34_7_396 HGNC:36771 3 3q13.33 ribosomal protein L34 pseudogene 9 pseudo RPL34P9 ribosomal protein L34 pseudogene 9 O - 20121230 -9606 100271003 RPL34P18 - RPL34_7_926 HGNC:35968 8 8q22.1 ribosomal protein L34 pseudogene 18 pseudo RPL34P18 ribosomal protein L34 pseudogene 18 O - 20121230 -9606 100271004 RPL34P10 - RPL34_8_445 HGNC:36962 3 3q27.2 ribosomal protein L34 pseudogene 10 pseudo RPL34P10 ribosomal protein L34 pseudogene 10 O - 20121230 -9606 100271006 RPL35P4 - RPL35_3_799 HGNC:36285 7 7p15.2 ribosomal protein L35 pseudogene 4 pseudo RPL35P4 ribosomal protein L35 pseudogene 4 O - 20121230 -9606 100271007 RPL35P6 - RPL35_5_881 HGNC:35520 8 8p22 ribosomal protein L35 pseudogene 6 pseudo RPL35P6 ribosomal protein L35 pseudogene 6 O - 20121230 -9606 100271008 RPL36P6 - RPL36_2_186 HGNC:36046 1 1q43 ribosomal protein L36 pseudogene 6 pseudo RPL36P6 ribosomal protein L36 pseudogene 6 O - 20121230 -9606 100271009 RPL36P9 - RPL36_2_687 HGNC:36746 6 6p21.2 ribosomal protein L36 pseudogene 9 pseudo RPL36P9 ribosomal protein L36 pseudogene 9 O - 20121230 -9606 100271010 RPL36P7 - RPL36_3_453 HGNC:35830 3 3q29 ribosomal protein L36 pseudogene 7 pseudo RPL36P7 ribosomal protein L36 pseudogene 7 O - 20121230 -9606 100271011 RPL36P10 - RPL36_3_697 HGNC:36318 6 6p12.3 ribosomal protein L36 pseudogene 10 pseudo RPL36P10 ribosomal protein L36 pseudogene 10 O - 20121230 -9606 100271012 RPL36P12 - RPL36_4_831 HGNC:35590 7 7q22-q31.1 ribosomal protein L36 pseudogene 12 pseudo RPL36P12 ribosomal protein L36 pseudogene 12 O - 20121230 -9606 100271013 RPL36P13 - RPL36_5_837 HGNC:36941 7 7q31 ribosomal protein L36 pseudogene 13 pseudo RPL36P13 ribosomal protein L36 pseudogene 13 O - 20121230 -9606 100271014 RPL37P8 - RPL37_2_190 HGNC:36279 1 1q44 ribosomal protein L37 pseudogene 8 pseudo RPL37P8 ribosomal protein L37 pseudogene 8 O - 20121230 -9606 100271015 RPL37P10 - RPL37_2_245 HGNC:36951 2 2p11.2 ribosomal protein L37 pseudogene 10 pseudo RPL37P10 ribosomal protein L37 pseudogene 10 O - 20121230 -9606 100271016 RPL37P11 - RPL37_3_203 HGNC:36459 2 2p23 ribosomal protein L37 pseudogene 11 pseudo RPL37P11 ribosomal protein L37 pseudogene 11 O - 20121230 -9606 100271017 RPL37P12 - RPL37_3_259 HGNC:36989 2 2q13 ribosomal protein L37 pseudogene 12 pseudo RPL37P12 ribosomal protein L37 pseudogene 12 O - 20121230 -9606 100271018 RPL37P13 - RPL37_4_228 HGNC:36255 2 2p15 ribosomal protein L37 pseudogene 13 pseudo RPL37P13 ribosomal protein L37 pseudogene 13 O - 20121230 -9606 100271019 RPL37P14 - RPL37_4_470 HGNC:36871 4 4p13-p12 ribosomal protein L37 pseudogene 14 pseudo RPL37P14 ribosomal protein L37 pseudogene 14 O - 20121230 -9606 100271020 RPL37P15 - RPL37_5_710 HGNC:36659 6 6q12-q13 ribosomal protein L37 pseudogene 15 pseudo RPL37P15 ribosomal protein L37 pseudogene 15 O - 20121230 -9606 100271021 RPL37P16 - RPL37_6_843 HGNC:35949 7 7q32.1 ribosomal protein L37 pseudogene 16 pseudo RPL37P16 ribosomal protein L37 pseudogene 16 O - 20121230 -9606 100271022 RPL39P11 - RPL39_3_134 HGNC:36798 1 1q25 ribosomal protein L39 pseudogene 11 pseudo RPL39P11 ribosomal protein L39 pseudogene 11 O - 20121230 -9606 100271023 RPL39P16 - RPL39_5_258 HGNC:35912 2 2q13 ribosomal protein L39 pseudogene 16 pseudo RPL39P16 ribosomal protein L39 pseudogene 16 O - 20121230 -9606 100271024 RPL39P17 - RPL39_6_343 HGNC:35545 3 3p25.1 ribosomal protein L39 pseudogene 17 pseudo RPL39P17 ribosomal protein L39 pseudogene 17 O - 20121230 -9606 100271025 RPL39P18 - RPL39_7_347 HGNC:36111 3 3p24.3 ribosomal protein L39 pseudogene 18 pseudo RPL39P18 ribosomal protein L39 pseudogene 18 O - 20121230 -9606 100271027 RPL39P19 - RPL39_8_448 HGNC:36346 3 3q27 ribosomal protein L39 pseudogene 19 pseudo RPL39P19 ribosomal protein L39 pseudogene 19 O - 20121230 -9606 100271028 RPL39P22 - RPL39_8_554 HGNC:36072 5 5p13 ribosomal protein L39 pseudogene 22 pseudo RPL39P22 ribosomal protein L39 pseudogene 22 O - 20121230 -9606 100271030 UBA52P4 - RPL40_1_352 HGNC:35929 3 3p22 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 4 pseudo UBA52P4 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 4 O - 20121230 -9606 100271031 UBA52P5 - RPL40_2_948 HGNC:36993 8 8q24.13 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 5 pseudo UBA52P5 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 5 O - 20121230 -9606 100271033 RPL4P6 - RPL4_4_1752 HGNC:35611 22 22q13.2 ribosomal protein L4 pseudogene 6 pseudo RPL4P6 ribosomal protein L4 pseudogene 6 O - 20121230 -9606 100271034 RPL6P24 - RPL6_8_1023 HGNC:36343 10 10p13 ribosomal protein L6 pseudogene 24 pseudo RPL6P24 ribosomal protein L6 pseudogene 24 O - 20121230 -9606 100271035 RPL6P26 - RPL6_9_1550 HGNC:36152 17 17q21.31 ribosomal protein L6 pseudogene 26 pseudo RPL6P26 ribosomal protein L6 pseudogene 26 O - 20121230 -9606 100271036 RPL7AP19 - RPL7A_2_119 HGNC:36820 1 1q23 ribosomal protein L7a pseudogene 19 pseudo RPL7AP19 ribosomal protein L7a pseudogene 19 O - 20121230 -9606 100271037 RPL7AP20 - RPL7A_3_155 HGNC:36358 1 1q32.1 ribosomal protein L7a pseudogene 20 pseudo RPL7AP20 ribosomal protein L7a pseudogene 20 O - 20121230 -9606 100271038 RPL7AP21 - RPL7A_4_120 HGNC:37020 1 1q23 ribosomal protein L7a pseudogene 21 pseudo RPL7AP21 ribosomal protein L7a pseudogene 21 O - 20121230 -9606 100271039 RPL7AP22 - RPL7A_4_289 HGNC:36592 2 2q24.1 ribosomal protein L7a pseudogene 22 pseudo RPL7AP22 ribosomal protein L7a pseudogene 22 O - 20121230 -9606 100271040 RPL7AP23 - RPL7A_5_385 HGNC:36884 3 3p12.2 ribosomal protein L7a pseudogene 23 pseudo RPL7AP23 ribosomal protein L7a pseudogene 23 O - 20121230 -9606 100271041 RPL7AP24 - RPL7A_6_424 HGNC:36588 3 3q24 ribosomal protein L7a pseudogene 24 pseudo RPL7AP24 ribosomal protein L7a pseudogene 24 O - 20121230 -9606 100271042 RPL7AP25 - RPL7A_6_441 HGNC:36714 3 3q26.33 ribosomal protein L7a pseudogene 25 pseudo RPL7AP25 ribosomal protein L7a pseudogene 25 O - 20121230 -9606 100271043 RPL7AP29 - RPL7A_7_455 HGNC:36394 4 4p16.2 ribosomal protein L7a pseudogene 29 pseudo RPL7AP29 ribosomal protein L7a pseudogene 29 O - 20121230 -9606 100271044 RPL8P5 - RPL8_2_1740 HGNC:35758 22 22q11.21 ribosomal protein L8 pseudogene 5 pseudo RPL8P5 ribosomal protein L8 pseudogene 5 O - 20121230 -9606 100271045 RPL9P24 - RPL9_7_1272 HGNC:36347 12 12q23.2 ribosomal protein L9 pseudogene 24 pseudo RPL9P24 ribosomal protein L9 pseudogene 24 O - 20121230 -9606 100271047 RPLP0P7 - RPLP0_2_288 HGNC:36578 2 2q24.1 ribosomal protein, large, P0 pseudogene 7 pseudo RPLP0P7 ribosomal protein, large, P0 pseudogene 7 O - 20121230 -9606 100271049 RPLP1P9 - RPLP1_3_885 HGNC:36069 8 8p21-p11.2 ribosomal protein, large, P1 pseudogene 9 pseudo RPLP1P9 ribosomal protein, large, P1 pseudogene 9 O - 20121230 -9606 100271050 RPS10P16 - RPS10_4_945 HGNC:36200 8 8q24.11 ribosomal protein S10 pseudogene 16 pseudo RPS10P16 ribosomal protein S10 pseudogene 16 O - 20121230 -9606 100271052 RPS11P4 - RPS11_2_972 HGNC:35644 9 9p21.1 ribosomal protein S11 pseudogene 4 pseudo RPS11P4 ribosomal protein S11 pseudogene 4 O - 20121230 -9606 100271053 RPS12P5 - RPS12_1_355 HGNC:36525 3 3p24.1 ribosomal protein S12 pseudogene 5 pseudo RPS12P5 ribosomal protein S12 pseudogene 5 O - 20121230 -9606 100271054 RPS12P6 - RPS12_2_384 HGNC:35790 3 3p12 ribosomal protein S12 pseudogene 6 pseudo RPS12P6 ribosomal protein S12 pseudogene 6 O - 20121230 -9606 100271055 RPS12P7 - RPS12_3_426 HGNC:36699 3 3q25.1 ribosomal protein S12 pseudogene 7 pseudo RPS12P7 ribosomal protein S12 pseudogene 7 O - 20121230 -9606 100271056 RPS12P10 - RPS12_4_622 HGNC:35824 5 5q31.3 ribosomal protein S12 pseudogene 10 pseudo RPS12P10 ribosomal protein S12 pseudogene 10 O - 20121230 -9606 100271057 RPS12P13 - RPS12_5_735 HGNC:36549 6 6q21 ribosomal protein S12 pseudogene 13 pseudo RPS12P13 ribosomal protein S12 pseudogene 13 O - 20121230 -9606 100271058 RPS12P14 - RPS12_6_698 HGNC:35632 6 6p12 ribosomal protein S12 pseudogene 14 pseudo RPS12P14 ribosomal protein S12 pseudogene 14 O - 20121230 -9606 100271059 RPS12P15 - RPS12_7_934 HGNC:35610 8 8q22.3 ribosomal protein S12 pseudogene 15 pseudo RPS12P15 ribosomal protein S12 pseudogene 15 O - 20121230 -9606 100271060 RPS13P4 - RPS13_2_199 HGNC:35731 2 2p23.3 ribosomal protein S13 pseudogene 4 pseudo RPS13P4 ribosomal protein S13 pseudogene 4 O - 20121230 -9606 100271061 RPS13P5 - RPS13_2_201 HGNC:36610 2 2p23.3 ribosomal protein S13 pseudogene 5 pseudo RPS13P5 ribosomal protein S13 pseudogene 5 O - 20121230 -9606 100271062 RPS13P6 - RPS13_4_614 HGNC:35653 5 5q31 ribosomal protein S13 pseudogene 6 pseudo RPS13P6 ribosomal protein S13 pseudogene 6 O - 20121230 -9606 100271063 RPS14P1 - RPS14_1_156 HGNC:35572 1 1q32 ribosomal protein S14 pseudogene 1 pseudo RPS14P1 ribosomal protein S14 pseudogene 1 O - 20121230 -9606 100271064 RPS14P2 - RPS14_2_132 HGNC:36080 1 1q24 ribosomal protein S14 pseudogene 2 pseudo RPS14P2 ribosomal protein S14 pseudogene 2 O - 20121230 -9606 100271065 RPS14P7 - RPS14_4_530 HGNC:36961 4 4q32.1 ribosomal protein S14 pseudogene 7 pseudo RPS14P7 ribosomal protein S14 pseudogene 7 O - 20121230 -9606 100271066 RPS15P2 - RPS15_1_177 HGNC:36033 1 1q42.2 ribosomal protein S15 pseudogene 2 pseudo RPS15P2 ribosomal protein S15 pseudogene 2 O - 20121230 -9606 100271067 RPS16P3 - RPS16_2_279 HGNC:35986 2 2q21.2 ribosomal protein S16 pseudogene 3 pseudo RPS16P3 ribosomal protein S16 pseudogene 3 O - 20121230 -9606 100271068 RPS16P4 - RPS16_2_363 HGNC:36502 3 3p22 ribosomal protein S16 pseudogene 4 pseudo RPS16P4 ribosomal protein S16 pseudogene 4 O - 20121230 -9606 100271069 RPS17P7 - RPS17_1_271 HGNC:35796 2 2q14 ribosomal protein S17 pseudogene 7 pseudo RPS17P7 ribosomal protein S17 pseudogene 7 O - 20121230 -9606 100271070 RPS17P8 - RPS17_2_307 HGNC:36772 2 2q32 ribosomal protein S17 pseudogene 8 pseudo RPS17P8 ribosomal protein S17 pseudogene 8 O - 20121230 -9606 100271071 RPS17P10 - RPS17_2_414 HGNC:36438 3 3q24 ribosomal protein S17 pseudogene 10 pseudo RPS17P10 ribosomal protein S17 pseudogene 10 O - 20121230 -9606 100271072 RPS17P11 - RPS17_4_560 HGNC:36132 5 5q11.2 ribosomal protein S17 pseudogene 11 pseudo RPS17P11 ribosomal protein S17 pseudogene 11 O - 20121230 -9606 100271073 RPS17P13 - RPS17_6_804 HGNC:36664 7 7p14.2 ribosomal protein S17 pseudogene 13 pseudo RPS17P13 ribosomal protein S17 pseudogene 13 O - 20121230 -9606 100271074 RPS17P14 - RPS17_6_941 HGNC:35534 8 8q23.1 ribosomal protein S17 pseudogene 14 pseudo RPS17P14 ribosomal protein S17 pseudogene 14 O - 20121230 -9606 100271075 RPS18P4 - RPS18_1_117 HGNC:36952 1 1q24 ribosomal protein S18 pseudogene 4 pseudo RPS18P4 ribosomal protein S18 pseudogene 4 O - 20121230 -9606 100271076 RPS18P6 - RPS18_3_386 HGNC:36028 3 3q11.2 ribosomal protein S18 pseudogene 6 pseudo RPS18P6 ribosomal protein S18 pseudogene 6 O - 20121230 -9606 100271077 RPS18P11 - RPS18_3_913 HGNC:36319 8 8q13.3 ribosomal protein S18 pseudogene 11 pseudo RPS18P11 ribosomal protein S18 pseudogene 11 O - 20121230 -9606 100271078 RPS19P6 - RPS19_2_988 HGNC:36217 9 9q21.31 ribosomal protein S19 pseudogene 6 pseudo RPS19P6 ribosomal protein S19 pseudogene 6 O - 20121230 -9606 100271079 RPS20P8 - RPS20_2_149 HGNC:35770 1 1q32.1 ribosomal protein S20 pseudogene 8 pseudo RPS20P8 ribosomal protein S20 pseudogene 8 O - 20121230 -9606 100271080 RPS20P9 - RPS20_3_230 HGNC:36472 2 2p15 ribosomal protein S20 pseudogene 9 pseudo RPS20P9 ribosomal protein S20 pseudogene 9 O - 20121230 -9606 100271081 RPS20P10 - RPS20_3_240 HGNC:36800 2 2p13.2 ribosomal protein S20 pseudogene 10 pseudo RPS20P10 ribosomal protein S20 pseudogene 10 O - 20121230 -9606 100271082 RPS20P11 - RPS20_4_266 HGNC:36084 2 2q13 ribosomal protein S20 pseudogene 11 pseudo RPS20P11 ribosomal protein S20 pseudogene 11 O - 20121230 -9606 100271083 RPS20P12 - RPS20_4_337 HGNC:36519 2 2q37.1 ribosomal protein S20 pseudogene 12 pseudo RPS20P12 ribosomal protein S20 pseudogene 12 O - 20121230 -9606 100271084 RPS20P13 - RPS20_5_284 HGNC:36071 2 2q22.3 ribosomal protein S20 pseudogene 13 pseudo RPS20P13 ribosomal protein S20 pseudogene 13 O - 20121230 -9606 100271085 RPS20P15 - RPS20_5_351 HGNC:36340 3 3p22 ribosomal protein S20 pseudogene 15 pseudo RPS20P15 ribosomal protein S20 pseudogene 15 O - 20121230 -9606 100271086 RPS20P16 - RPS20_7_597 HGNC:35851 5 5q15 ribosomal protein S20 pseudogene 16 pseudo RPS20P16 ribosomal protein S20 pseudogene 16 O - 20121230 -9606 100271087 RPS20P22 - RPS20_8_895 HGNC:36379 8 8p12 ribosomal protein S20 pseudogene 22 pseudo RPS20P22 ribosomal protein S20 pseudogene 22 O - 20121230 -9606 100271088 RPS20P17 - RPS20_9_642 HGNC:35822 5 5q35.3 ribosomal protein S20 pseudogene 17 pseudo RPS20P17 ribosomal protein S20 pseudogene 17 O - 20121230 -9606 100271089 RPS20P23 - RPS20_9_932 HGNC:36146 8 8q22.3 ribosomal protein S20 pseudogene 23 pseudo RPS20P23 ribosomal protein S20 pseudogene 23 O - 20121230 -9606 100271090 RPS21P1 - RPS21_1_179 HGNC:36401 1 1q42.3 ribosomal protein S21 pseudogene 1 pseudo RPS21P1 ribosomal protein S21 pseudogene 1 O - 20121230 -9606 100271091 RPS23P3 - RPS23_1_489 HGNC:35499 4 4q13.2 ribosomal protein S23 pseudogene 3 pseudo RPS23P3 ribosomal protein S23 pseudogene 3 O - 20121230 -9606 100271092 RPS23P4 - RPS23_1_526 HGNC:36633 4 4q31.22 ribosomal protein S23 pseudogene 4 pseudo RPS23P4 ribosomal protein S23 pseudogene 4 O - 20121230 -9606 100271093 RPS23P5 - RPS23_2_542 HGNC:35726 5 5p15.2 ribosomal protein S23 pseudogene 5 pseudo RPS23P5 ribosomal protein S23 pseudogene 5 O - 20121230 -9606 100271094 RPS24P5 - RPS24_1_136 HGNC:36026 1 1p36.13-q41 ribosomal protein S24 pseudogene 5 pseudo RPS24P5 ribosomal protein S24 pseudogene 5 O - 20121230 -9606 100271097 RPS24P10 - RPS24_3_344 HGNC:36554 3 3p25 ribosomal protein S24 pseudogene 10 pseudo RPS24P10 ribosomal protein S24 pseudogene 10 O - 20121230 -9606 100271098 RPS24P12 - RPS24_3_730 HGNC:35623 6 6q21 ribosomal protein S24 pseudogene 12 pseudo RPS24P12 ribosomal protein S24 pseudogene 12 O - 20121230 -9606 100271100 RPS25P2 - RPS25_1_159 HGNC:36701 1 1q32.2 ribosomal protein S25 pseudogene 2 pseudo RPS25P2 ribosomal protein S25 pseudogene 2 O - 20121230 -9606 100271101 RPS25P3 - RPS25_1_198 HGNC:36073 2 2p24.1 ribosomal protein S25 pseudogene 3 pseudo RPS25P3 ribosomal protein S25 pseudogene 3 O - 20121230 -9606 100271102 RPS25P5 - RPS25_3_418 HGNC:35788 3 3q21-q25 ribosomal protein S25 pseudogene 5 pseudo RPS25P5 ribosomal protein S25 pseudogene 5 O - 20121230 -9606 100271103 RPS25P7 - RPS25_5_649 HGNC:36585 6 6p25 ribosomal protein S25 pseudogene 7 pseudo RPS25P7 ribosomal protein S25 pseudogene 7 O - 20121230 -9606 100271104 RPS26P12 - RPS26_2_128 HGNC:35487 1 1q24 ribosomal protein S26 pseudogene 12 pseudo RPS26P12 ribosomal protein S26 pseudogene 12 O - 20121230 -9606 100271105 RPS26P21 - RPS26_3_394 HGNC:36469 3 3q13.33 ribosomal protein S26 pseudogene 21 pseudo RPS26P21 ribosomal protein S26 pseudogene 21 O - 20121230 -9606 100271106 RPS26P13 - RPS26_4_158 HGNC:35784 1 1q32.2 ribosomal protein S26 pseudogene 13 pseudo RPS26P13 ribosomal protein S26 pseudogene 13 O - 20121230 -9606 100271107 RPS26P23 - RPS26_4_515 HGNC:36332 4 4q26 ribosomal protein S26 pseudogene 23 pseudo RPS26P23 ribosomal protein S26 pseudogene 23 O - 20121230 -9606 100271108 RPS26P18 - RPS26_5_195 HGNC:35782 2 2p24 ribosomal protein S26 pseudogene 18 pseudo RPS26P18 ribosomal protein S26 pseudogene 18 O - 20121230 -9606 100271109 RPS26P26 - RPS26_5_578 HGNC:36029 5 5q13.3 ribosomal protein S26 pseudogene 26 pseudo RPS26P26 ribosomal protein S26 pseudogene 26 O - 20121230 -9606 100271110 RPS26P19 - RPS26_6_273 HGNC:36377 2 2q21 ribosomal protein S26 pseudogene 19 pseudo RPS26P19 ribosomal protein S26 pseudogene 19 O - 20121230 -9606 100271111 RPS26P30 - RPS26_7_791 HGNC:35574 7 7p15.3 ribosomal protein S26 pseudogene 30 pseudo RPS26P30 ribosomal protein S26 pseudogene 30 O - 20121230 -9606 100271112 RPS26P22 - RPS26_8_399 HGNC:36261 3 3q13 ribosomal protein S26 pseudogene 22 pseudo RPS26P22 ribosomal protein S26 pseudogene 22 O - 20121230 -9606 100271113 RPS26P24 - RPS26_9_482 HGNC:36917 4 4q12 ribosomal protein S26 pseudogene 24 pseudo RPS26P24 ribosomal protein S26 pseudogene 24 O - 20121230 -9606 100271114 RPS26P34 - RPS26_9_922 HGNC:36894 8 8q21.13 ribosomal protein S26 pseudogene 34 pseudo RPS26P34 ribosomal protein S26 pseudogene 34 O - 20121230 -9606 100271115 RPS27P11 - RPS27_3_353 HGNC:36014 3 3p21.3-p21.2 ribosomal protein S27 pseudogene 11 pseudo RPS27P11 ribosomal protein S27 pseudogene 11 O - 20121230 -9606 100271116 RPS27P5 - RPS27_4_170 HGNC:36734 1 1q42.13 ribosomal protein S27 pseudogene 5 pseudo RPS27P5 ribosomal protein S27 pseudogene 5 O - 20121230 -9606 100271117 RPS27P12 - RPS27_4_403 HGNC:35843 3 3q21 ribosomal protein S27 pseudogene 12 pseudo RPS27P12 ribosomal protein S27 pseudogene 12 O - 20121230 -9606 100271118 RPS27P15 - RPS27_8_714 HGNC:35863 6 6q14-q15 ribosomal protein S27 pseudogene 15 pseudo RPS27P15 ribosomal protein S27 pseudogene 15 O - 20121230 -9606 100271119 RPS27P16 - RPS27_9_801 HGNC:36560 7 7p15.1 ribosomal protein S27 pseudogene 16 pseudo RPS27P16 ribosomal protein S27 pseudogene 16 O - 20121230 -9606 100271120 RPS28P2 - RPS28_1_163 HGNC:36211 1 1q41 ribosomal protein S28 pseudogene 2 pseudo RPS28P2 ribosomal protein S28 pseudogene 2 O - 20121230 -9606 100271121 RPS28P5 - RPS28_3_243 HGNC:36802 2 2p13.1 ribosomal protein S28 pseudogene 5 pseudo RPS28P5 ribosomal protein S28 pseudogene 5 O - 20121230 -9606 100271122 RPS29P13 - RPS29_2_744 HGNC:35818 6 6q22.1 ribosomal protein S29 pseudogene 13 pseudo RPS29P13 ribosomal protein S29 pseudogene 13 O - 20121230 -9606 100271123 RPS29P4 - RPS29_3_129 HGNC:35908 1 1q24-q25 ribosomal protein S29 pseudogene 4 pseudo RPS29P4 ribosomal protein S29 pseudogene 4 O - 20121230 -9606 100271124 RPS29P5 - RPS29_4_130 HGNC:35584 1 1q25.1-q25.2 ribosomal protein S29 pseudogene 5 pseudo RPS29P5 ribosomal protein S29 pseudogene 5 O - 20121230 -9606 100271125 FAUP2 - RPS30_1_440 HGNC:36535 3 3q26.33 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 2 pseudo FAUP2 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 2 O - 20121230 -9606 100271126 FAUP3 - RPS30_1_539 HGNC:36970 4 4q35.2 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 3 pseudo FAUP3 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 3 O - 20121230 -9606 100271127 RPS3AP8 - RPS3A_3_138 HGNC:35638 1 1q25 ribosomal protein S3a pseudogene 8 pseudo RPS3AP8 ribosomal protein S3a pseudogene 8 O - 20121230 -9606 100271129 RPS3AP9 - RPS3A_4_140 HGNC:36150 1 1q31.1 ribosomal protein S3a pseudogene 9 pseudo RPS3AP9 ribosomal protein S3a pseudogene 9 O - 20121230 -9606 100271130 RPS3AP17 - RPS3A_4_467 HGNC:36083 4 4p15.1 ribosomal protein S3a pseudogene 17 pseudo RPS3AP17 ribosomal protein S3a pseudogene 17 O - 20121230 -9606 100271131 RPS3AP23 - RPS3A_8_764 HGNC:36767 6 6q24.1 ribosomal protein S3a pseudogene 23 pseudo RPS3AP23 ribosomal protein S3a pseudogene 23 O - 20121230 -9606 100271132 RPS4XP5 - RPS4P5|RPS4X_1_232 HGNC:36670 2 2p15 ribosomal protein S4X pseudogene 5 pseudo RPS4XP5 ribosomal protein S4X pseudogene 5 O - 20121230 -9606 100271133 RPS4XP10 - RPS4P10|RPS4X_6_927 HGNC:35741 8 8q21.3-q22 ribosomal protein S4X pseudogene 10 pseudo RPS4XP10 ribosomal protein S4X pseudogene 10 O - 20121230 -9606 100271135 RPS6P18 - RPS6_8_1191 HGNC:36496 12 12p13.3 ribosomal protein S6 pseudogene 18 pseudo RPS6P18 ribosomal protein S6 pseudogene 18 O - 20121230 -9606 100271136 RPS6P19 - RPS6_9_1270 HGNC:36136 12 12q23.2 ribosomal protein S6 pseudogene 19 pseudo RPS6P19 ribosomal protein S6 pseudogene 19 O - 20121230 -9606 100271137 RPL13AP9 - RPL13A_1_58 HGNC:36341 1 1p31.3 ribosomal protein L13a pseudogene 9 pseudo RPL13AP9 ribosomal protein L13a pseudogene 9 O - 20121230 -9606 100271138 RPL23AP17 - RPL23A_3_37 HGNC:35904 1 1p34 ribosomal protein L23a pseudogene 17 pseudo RPL23AP17 ribosomal protein L23a pseudogene 17 O - 20121230 -9606 100271139 RPL36AP9 - RPL36A_1_38 HGNC:35872 1 1p34.1 ribosomal protein L36a pseudogene 9 pseudo RPL36AP9 ribosomal protein L36a pseudogene 9 O - 20121230 -9606 100271140 RPL36AP10 - RPL36A_1_70 HGNC:36175 1 1p22.2 ribosomal protein L36a pseudogene 10 pseudo RPL36AP10 ribosomal protein L36a pseudogene 10 O - 20121230 -9606 100271141 RPS15AP6 - RPS15A_1_18 HGNC:35657 1 1p36.12 ribosomal protein S15a pseudogene 6 pseudo RPS15AP6 ribosomal protein S15a pseudogene 6 O - 20121230 -9606 100271142 RPS15AP7 - RPS15A_1_57 HGNC:35648 1 1p31.3 ribosomal protein S15a pseudogene 7 pseudo RPS15AP7 ribosomal protein S15a pseudogene 7 O - 20121230 -9606 100271143 RPS15AP8 - RPS15A_2_39 HGNC:36887 1 1p34.2 ribosomal protein S15a pseudogene 8 pseudo RPS15AP8 ribosomal protein S15a pseudogene 8 O - 20121230 -9606 100271144 RPS27AP6 - RPS27A_1_97 HGNC:36236 1 1q21 ribosomal protein S27a pseudogene 6 pseudo RPS27AP6 ribosomal protein S27a pseudogene 6 O - 20121230 -9606 100271145 RPL7P53 - RPL7_30_1785 HGNC:36831 X Xq13.2 ribosomal protein L7 pseudogene 53 pseudo RPL7P53 ribosomal protein L7 pseudogene 53 O - 20121230 -9606 100271146 RPL7P54 - RPL7_31_1789 HGNC:36817 X Xq21.1 ribosomal protein L7 pseudogene 54 pseudo RPL7P54 ribosomal protein L7 pseudogene 54 O - 20121230 -9606 100271147 RPL7P55 - RPL7_32_1793 HGNC:36105 X Xq21.32 ribosomal protein L7 pseudogene 55 pseudo RPL7P55 ribosomal protein L7 pseudogene 55 O - 20121230 -9606 100271148 RPSAP59 - RPSA_27_1799 HGNC:36957 X Xq22.1-q22.3 ribosomal protein SA pseudogene 59 pseudo RPSAP59 ribosomal protein SA pseudogene 59 O - 20121230 -9606 100271149 RPSAP60 - RPSA_28_1820 HGNC:36331 X Xq28 ribosomal protein SA pseudogene 60 pseudo RPSAP60 ribosomal protein SA pseudogene 60 O - 20121230 -9606 100271150 RPL17P19 - RPL17_11_483 HGNC:36919 4 4q13.1 ribosomal protein L17 pseudogene 19 pseudo RPL17P19 ribosomal protein L17 pseudogene 19 O - 20121230 -9606 100271151 RPL17P21 - RPL17_12_561 HGNC:36037 5 5q11.2 ribosomal protein L17 pseudogene 21 pseudo RPL17P21 ribosomal protein L17 pseudogene 21 O - 20121230 -9606 100271152 RPL17P23 - RPL17_15_751 HGNC:35832 6 6q22.33 ribosomal protein L17 pseudogene 23 pseudo RPL17P23 ribosomal protein L17 pseudogene 23 O - 20121230 -9606 100271153 RPL17P24 - RPL17_16_771 HGNC:36506 6 6q25.2 ribosomal protein L17 pseudogene 24 pseudo RPL17P24 ribosomal protein L17 pseudogene 24 O - 20121230 -9606 100271154 RPL17P29 - RPL17_18_874 HGNC:36510 8 8p23.1 ribosomal protein L17 pseudogene 29 pseudo RPL17P29 ribosomal protein L17 pseudogene 29 O - 20121230 -9606 100271155 RPL17P30 - RPL17_20_898 HGNC:35604 8 8p12 ribosomal protein L17 pseudogene 30 pseudo RPL17P30 ribosomal protein L17 pseudogene 30 O - 20121230 -9606 100271156 RPL17P31 - RPL17_21_910 HGNC:37036 8 8q13.2 ribosomal protein L17 pseudogene 31 pseudo RPL17P31 ribosomal protein L17 pseudogene 31 O - 20121230 -9606 100271157 RPL21P30 - RPL21_10_219 HGNC:36091 2 2p16.2 ribosomal protein L21 pseudogene 30 pseudo RPL21P30 ribosomal protein L21 pseudogene 30 O - 20121230 -9606 100271158 RPL21P40 - RPL21_10_356 HGNC:36189 3 3p22.3 ribosomal protein L21 pseudogene 40 pseudo RPL21P40 ribosomal protein L21 pseudogene 40 O - 20121230 -9606 100271159 RPL21P41 - RPL21_11_380 HGNC:36765 3 3p14.1 ribosomal protein L21 pseudogene 41 pseudo RPL21P41 ribosomal protein L21 pseudogene 41 O - 20121230 -9606 100271160 RPL21P31 - RPL21_12_296 HGNC:36306 2 2q32 ribosomal protein L21 pseudogene 31 pseudo RPL21P31 ribosomal protein L21 pseudogene 31 O - 20121230 -9606 100271161 RPL21P32 - RPL21_13_305 HGNC:36978 2 2q32.1 ribosomal protein L21 pseudogene 32 pseudo RPL21P32 ribosomal protein L21 pseudogene 32 O - 20121230 -9606 100271162 RPL21P42 - RPL21_13_421 HGNC:37017 3 3q25.2 ribosomal protein L21 pseudogene 42 pseudo RPL21P42 ribosomal protein L21 pseudogene 42 O - 20121230 -9606 100271163 RPL21P43 - RPL21_15_434 HGNC:36008 3 3q26.2 ribosomal protein L21 pseudogene 43 pseudo RPL21P43 ribosomal protein L21 pseudogene 43 O - 20121230 -9606 100271164 RPL21P47 - RPL21_16_486 HGNC:36711 4 4q13.1 ribosomal protein L21 pseudogene 47 pseudo RPL21P47 ribosomal protein L21 pseudogene 47 O - 20121230 -9606 100271165 RPL21P48 - RPL21_17_503 HGNC:35891 4 4q23 ribosomal protein L21 pseudogene 48 pseudo RPL21P48 ribosomal protein L21 pseudogene 48 O - 20121230 -9606 100271166 RPL21P49 - RPL21_18_504 HGNC:35769 4 4q24 ribosomal protein L21 pseudogene 49 pseudo RPL21P49 ribosomal protein L21 pseudogene 49 O - 20121230 -9606 100271167 RPL21P50 - RPL21_18_516 HGNC:36433 4 4q28.1 ribosomal protein L21 pseudogene 50 pseudo RPL21P50 ribosomal protein L21 pseudogene 50 O - 20121230 -9606 100271168 RPL21P54 - RPL21_19_553 HGNC:35552 5 5p13.2 ribosomal protein L21 pseudogene 54 pseudo RPL21P54 ribosomal protein L21 pseudogene 54 O - 20121230 -9606 100271169 RPL21P51 - RPL21_20_533 HGNC:36081 4 4q32.3 ribosomal protein L21 pseudogene 51 pseudo RPL21P51 ribosomal protein L21 pseudogene 51 O - 20121230 -9606 100271170 RPL21P55 - RPL21_20_571 HGNC:36434 5 5q12.3 ribosomal protein L21 pseudogene 55 pseudo RPL21P55 ribosomal protein L21 pseudogene 55 O - 20121230 -9606 100271171 RPL21P56 - RPL21_21_549 HGNC:35525 5 5p13.3 ribosomal protein L21 pseudogene 56 pseudo RPL21P56 ribosomal protein L21 pseudogene 56 O - 20121230 -9606 100271172 RPL21P57 - RPL21_21_631 HGNC:36644 5 5q33.2 ribosomal protein L21 pseudogene 57 pseudo RPL21P57 ribosomal protein L21 pseudogene 57 O - 20121230 -9606 100271173 RPL21P58 - RPL21_22_606 HGNC:35755 5 5q23.1 ribosomal protein L21 pseudogene 58 pseudo RPL21P58 ribosomal protein L21 pseudogene 58 O - 20121230 -9606 100271174 RPL21P59 - RPL21_22_635 HGNC:36922 5 5q34 ribosomal protein L21 pseudogene 59 pseudo RPL21P59 ribosomal protein L21 pseudogene 59 O - 20121230 -9606 100271175 RPL21P60 - RPL21_23_641 HGNC:36044 5 5q35.3 ribosomal protein L21 pseudogene 60 pseudo RPL21P60 ribosomal protein L21 pseudogene 60 O - 20121230 -9606 100271176 RPL21P63 - RPL21_24_657 HGNC:35526 6 6p24.2 ribosomal protein L21 pseudogene 63 pseudo RPL21P63 ribosomal protein L21 pseudogene 63 O - 20121230 -9606 100271177 RPL21P64 - RPL21_25_752 HGNC:36259 6 6q22.33 ribosomal protein L21 pseudogene 64 pseudo RPL21P64 ribosomal protein L21 pseudogene 64 O - 20121230 -9606 100271178 RPL21P65 - RPL21_26_729 HGNC:36017 6 6q21 ribosomal protein L21 pseudogene 65 pseudo RPL21P65 ribosomal protein L21 pseudogene 65 O - 20121230 -9606 100271179 RPL21P66 - RPL21_26_756 HGNC:36476 6 6q23 ribosomal protein L21 pseudogene 66 pseudo RPL21P66 ribosomal protein L21 pseudogene 66 O - 20121230 -9606 100271180 RPL21P67 - RPL21_27_754 HGNC:36139 6 6q23.2 ribosomal protein L21 pseudogene 67 pseudo RPL21P67 ribosomal protein L21 pseudogene 67 O - 20121230 -9606 100271181 RPL21P72 - RPL21_28_779 HGNC:37043 7 7p22.2 ribosomal protein L21 pseudogene 72 pseudo RPL21P72 ribosomal protein L21 pseudogene 72 O - 20121230 -9606 100271182 RPL21P73 - RPL21_28_856 HGNC:36794 7 7q34 ribosomal protein L21 pseudogene 73 pseudo RPL21P73 ribosomal protein L21 pseudogene 73 O - 20121230 -9606 100271183 RPL21P77 - RPL21_29_883 HGNC:36186 8 8p21.3 ribosomal protein L21 pseudogene 77 pseudo RPL21P77 ribosomal protein L21 pseudogene 77 O - 20121230 -9606 100271184 RPL21P74 - RPL21_30_821 HGNC:35854 7 7q21.3 ribosomal protein L21 pseudogene 74 pseudo RPL21P74 ribosomal protein L21 pseudogene 74 O - 20121230 -9606 100271185 RPL21P78 - RPL21_30_950 HGNC:35917 8 8q24 ribosomal protein L21 pseudogene 78 pseudo RPL21P78 ribosomal protein L21 pseudogene 78 O - 20121230 -9606 100271186 RPL21P83 - RPL21_31_978 HGNC:35864 9 9p13.2 ribosomal protein L21 pseudogene 83 pseudo RPL21P83 ribosomal protein L21 pseudogene 83 O - 20121230 -9606 100271187 RPL21P84 - RPL21_32_987 HGNC:36612 9 9q21.2 ribosomal protein L21 pseudogene 84 pseudo RPL21P84 ribosomal protein L21 pseudogene 84 O - 20121230 -9606 100271188 RPL21P79 - RPL21_33_903 HGNC:36931 8 8q11.23 ribosomal protein L21 pseudogene 79 pseudo RPL21P79 ribosomal protein L21 pseudogene 79 O - 20121230 -9606 100271189 RPL21P85 - RPL21_33_996 HGNC:35694 9 9q22.1-q22.3 ribosomal protein L21 pseudogene 85 pseudo RPL21P85 ribosomal protein L21 pseudogene 85 O - 20121230 -9606 100271190 RPL21P86 - RPL21_34_998 HGNC:37032 9 9q22.31 ribosomal protein L21 pseudogene 86 pseudo RPL21P86 ribosomal protein L21 pseudogene 86 O - 20121230 -9606 100271191 RPL26P20 - RPL26_10_715 HGNC:35933 6 6q14.1 ribosomal protein L26 pseudogene 20 pseudo RPL26P20 ribosomal protein L26 pseudogene 20 O - 20121230 -9606 100271192 RPL30P15 - RPL30_7_1765 HGNC:36542 X Xp22 ribosomal protein L30 pseudogene 15 pseudo RPL30P15 ribosomal protein L30 pseudogene 15 O - 20121230 -9606 100271193 RPL31P34 - RPL31_10_781 HGNC:35853 7 7p22.1 ribosomal protein L31 pseudogene 34 pseudo RPL31P34 ribosomal protein L31 pseudogene 34 O - 20121230 -9606 100271194 RPL31P24 - RPL31_11_499 HGNC:36353 4 4q22 ribosomal protein L31 pseudogene 24 pseudo RPL31P24 ribosomal protein L31 pseudogene 24 O - 20121230 -9606 100271196 RPL31P40 - RPL31_12_911 HGNC:36134 8 8q13.2 ribosomal protein L31 pseudogene 40 pseudo RPL31P40 ribosomal protein L31 pseudogene 40 O - 20121230 -9606 100271197 RPL31P42 - RPL31_13_966 HGNC:36930 9 9p22.2 ribosomal protein L31 pseudogene 42 pseudo RPL31P42 ribosomal protein L31 pseudogene 42 O - 20121230 -9606 100271198 RPL31P27 - RPL31_15_765 HGNC:36275 6 6q24.2 ribosomal protein L31 pseudogene 27 pseudo RPL31P27 ribosomal protein L31 pseudogene 27 O - 20121230 -9606 100271199 RPL31P35 - RPL31_16_810 HGNC:36932 7 7p11.2 ribosomal protein L31 pseudogene 35 pseudo RPL31P35 ribosomal protein L31 pseudogene 35 O - 20121230 -9606 100271200 RPL31P36 - RPL31_19_846 HGNC:36676 7 7q32 ribosomal protein L31 pseudogene 36 pseudo RPL31P36 ribosomal protein L31 pseudogene 36 O - 20121230 -9606 100271201 RPL31P41 - RPL31_20_909 HGNC:36720 8 8q13.1 ribosomal protein L31 pseudogene 41 pseudo RPL31P41 ribosomal protein L31 pseudogene 41 O - 20121230 -9606 100271202 RPL37P17 - RPL37_7_1015 HGNC:36023 9 9q34 ribosomal protein L37 pseudogene 17 pseudo RPL37P17 ribosomal protein L37 pseudogene 17 O - 20121230 -9606 100271203 RPL39P23 - RPL39_10_809 HGNC:36581 7 7p12-p11.2 ribosomal protein L39 pseudogene 23 pseudo RPL39P23 ribosomal protein L39 pseudogene 23 O - 20121230 -9606 100271204 RPL5P25 - RPL5_10_1021 HGNC:35493 10 10p13 ribosomal protein L5 pseudogene 25 pseudo RPL5P25 ribosomal protein L5 pseudogene 25 O - 20121230 -9606 100271206 RPL5P26 - RPL5_13_1059 HGNC:36247 10 10q22 ribosomal protein L5 pseudogene 26 pseudo RPL5P26 ribosomal protein L5 pseudogene 26 O - 20121230 -9606 100271207 RPL5P32 - RPL5_17_1422 HGNC:36973 15 15q13.1 ribosomal protein L5 pseudogene 32 pseudo RPL5P32 ribosomal protein L5 pseudogene 32 O - 20121230 -9606 100271208 RPL6P28 - RPL6_16_1757 HGNC:36065 22 22q13.31 ribosomal protein L6 pseudogene 28 pseudo RPL6P28 ribosomal protein L6 pseudogene 28 O - 20121230 -9606 100271209 RPL7AP28 - RPL7A_10_519 HGNC:35656 4 4q28.3 ribosomal protein L7a pseudogene 28 pseudo RPL7AP28 ribosomal protein L7a pseudogene 28 O - 20121230 -9606 100271210 RPL7AP35 - RPL7A_10_727 HGNC:36113 6 6q21 ribosomal protein L7a pseudogene 35 pseudo RPL7AP35 ribosomal protein L7a pseudogene 35 O - 20121230 -9606 100271211 RPL7AP47 - RPL7A_13_964 HGNC:36833 9 9p23 ribosomal protein L7a pseudogene 47 pseudo RPL7AP47 ribosomal protein L7a pseudogene 47 O - 20121230 -9606 100271212 RPL7AP48 - RPL7A_14_968 HGNC:35953 9 9p22 ribosomal protein L7a pseudogene 48 pseudo RPL7AP48 ribosomal protein L7a pseudogene 48 O - 20121230 -9606 100271213 RPL7AP41 - RPL7A_16_795 HGNC:36403 7 7p15.2 ribosomal protein L7a pseudogene 41 pseudo RPL7AP41 ribosomal protein L7a pseudogene 41 O - 20121230 -9606 100271214 RPL7AP49 - RPL7A_16_980 HGNC:35507 9 9p12 ribosomal protein L7a pseudogene 49 pseudo RPL7AP49 ribosomal protein L7a pseudogene 49 O - 20121230 -9606 100271215 RPL7AP42 - RPL7A_19_836 HGNC:36716 7 7q31.1 ribosomal protein L7a pseudogene 42 pseudo RPL7AP42 ribosomal protein L7a pseudogene 42 O - 20121230 -9606 100271216 RPL7P35 - RPL7_15_1095 HGNC:36153 10 10q25 ribosomal protein L7 pseudogene 35 pseudo RPL7P35 ribosomal protein L7 pseudogene 35 O - 20121230 -9606 100271217 RPL7P39 - RPL7_16_1250 HGNC:36214 12 12q14.3 ribosomal protein L7 pseudogene 39 pseudo RPL7P39 ribosomal protein L7 pseudogene 39 O - 20121230 -9606 100271218 RPL7P36 - RPL7_18_1089 HGNC:37045 10 10q24.2 ribosomal protein L7 pseudogene 36 pseudo RPL7P36 ribosomal protein L7 pseudogene 36 O - 20121230 -9606 100271220 RPL7P40 - RPL7_19_1215 HGNC:36031 12 12p12.3 ribosomal protein L7 pseudogene 40 pseudo RPL7P40 ribosomal protein L7 pseudogene 40 O - 20121230 -9606 100271221 RPL7P49 - RPL7_20_1575 HGNC:36912 17 17q25 ribosomal protein L7 pseudogene 49 pseudo RPL7P49 ribosomal protein L7 pseudogene 49 O - 20121230 -9606 100271222 RPL7P41 - RPL7_21_1238 HGNC:36297 12 12q13 ribosomal protein L7 pseudogene 41 pseudo RPL7P41 ribosomal protein L7 pseudogene 41 O - 20121230 -9606 100271223 RPL7P42 - RPL7_22_1255 HGNC:35543 12 12q15 ribosomal protein L7 pseudogene 42 pseudo RPL7P42 ribosomal protein L7 pseudogene 42 O - 20121230 -9606 100271224 RPL7P43 - RPL7_23_1260 HGNC:36441 12 12q21.2 ribosomal protein L7 pseudogene 43 pseudo RPL7P43 ribosomal protein L7 pseudogene 43 O - 20121230 -9606 100271225 RPL7P45 - RPL7_25_1334 HGNC:35522 13 13q33.2 ribosomal protein L7 pseudogene 45 pseudo RPL7P45 ribosomal protein L7 pseudogene 45 O - 20121230 -9606 100271226 RPL7P51 - RPL7_29_1664 HGNC:36432 19 19q13.3 ribosomal protein L7 pseudogene 51 pseudo RPL7P51 ribosomal protein L7 pseudogene 51 O - 20121230 -9606 100271227 RPL9P26 - RPL9_11_1421 HGNC:35633 15 15q11.2-q12 ribosomal protein L9 pseudogene 26 pseudo RPL9P26 ribosomal protein L9 pseudogene 26 O - 20121230 -9606 100271228 RPL9P31 - RPL9_12_1606 HGNC:36617 18 18q21 ribosomal protein L9 pseudogene 31 pseudo RPL9P31 ribosomal protein L9 pseudogene 31 O - 20121230 -9606 100271229 RPL9P33 - RPL9_13_1663 HGNC:36273 19 19q13.3 ribosomal protein L9 pseudogene 33 pseudo RPL9P33 ribosomal protein L9 pseudogene 33 O - 20121230 -9606 100271230 RPS17P17 - RPS17_8_1818 HGNC:35647 X Xq27.1 ribosomal protein S17 pseudogene 17 pseudo RPS17P17 ribosomal protein S17 pseudogene 17 O - 20121230 -9606 100271231 RPS20P18 - RPS20_10_738 HGNC:36937 6 6q21 ribosomal protein S20 pseudogene 18 pseudo RPS20P18 ribosomal protein S20 pseudogene 18 O - 20121230 -9606 100271232 RPS20P24 - RPS20_10_984 HGNC:36283 9 9q21.12 ribosomal protein S20 pseudogene 24 pseudo RPS20P24 ribosomal protein S20 pseudogene 24 O - 20121230 -9606 100271233 RPS20P20 - RPS20_11_915 HGNC:36674 8 8q13 ribosomal protein S20 pseudogene 20 pseudo RPS20P20 ribosomal protein S20 pseudogene 20 O - 20121230 -9606 100271234 RPS20P21 - RPS20_12_916 HGNC:35993 8 8q21.11 ribosomal protein S20 pseudogene 21 pseudo RPS20P21 ribosomal protein S20 pseudogene 21 O - 20121230 -9606 100271235 RPS20P25 - RPS20_13_989 HGNC:35866 9 9q21.31 ribosomal protein S20 pseudogene 25 pseudo RPS20P25 ribosomal protein S20 pseudogene 25 O - 20121230 -9606 100271236 RPS21P5 - RPS21_3_1008 HGNC:36359 9 9q31.3-q32 ribosomal protein S21 pseudogene 5 pseudo RPS21P5 ribosomal protein S21 pseudogene 5 O - 20121230 -9606 100271237 RPS26P27 - RPS26_12_587 HGNC:35636 5 5q11-q12 ribosomal protein S26 pseudogene 27 pseudo RPS26P27 ribosomal protein S26 pseudogene 27 O - 20121230 -9606 100271238 RPS26P37 - RPS26_12_999 HGNC:36875 9 9q22.3 ribosomal protein S26 pseudogene 37 pseudo RPS26P37 ribosomal protein S26 pseudogene 37 O - 20121230 -9606 100271239 RPS26P33 - RPS26_14_825 HGNC:36227 7 7q21.3-q22.1 ribosomal protein S26 pseudogene 33 pseudo RPS26P33 ribosomal protein S26 pseudogene 33 O - 20121230 -9606 100271240 RPS26P36 - RPS26_18_953 HGNC:36561 8 8q24.3 ribosomal protein S26 pseudogene 36 pseudo RPS26P36 ribosomal protein S26 pseudogene 36 O - 20121230 -9606 100271241 RPS29P15 - RPS29_10_826 HGNC:35876 7 7q22 ribosomal protein S29 pseudogene 15 pseudo RPS29P15 ribosomal protein S29 pseudogene 15 O - 20121230 -9606 100271243 RPS2P36 - RPS2_13_1085 HGNC:36784 10 10q24.1 ribosomal protein S2 pseudogene 36 pseudo RPS2P36 ribosomal protein S2 pseudogene 36 O - 20121230 -9606 100271244 RPS2P39 - RPS2_15_1171 HGNC:36131 11 11q22.3 ribosomal protein S2 pseudogene 39 pseudo RPS2P39 ribosomal protein S2 pseudogene 39 O - 20121230 -9606 100271245 RPS2P41 - RPS2_16_1278 HGNC:36357 12 12q24.2 ribosomal protein S2 pseudogene 41 pseudo RPS2P41 ribosomal protein S2 pseudogene 41 O - 20121230 -9606 100271246 RPS2P43 - RPS2_18_1391 HGNC:35652 14 14q24 ribosomal protein S2 pseudogene 43 pseudo RPS2P43 ribosomal protein S2 pseudogene 43 O - 20121230 -9606 100271247 RPS2P42 - RPS2_19_1214 HGNC:36481 12 12p13.3-p13.2 ribosomal protein S2 pseudogene 42 pseudo RPS2P42 ribosomal protein S2 pseudogene 42 O - 20121230 -9606 100271248 RPS2P44 - RPS2_21_1482 HGNC:35811 16 16q12.1 ribosomal protein S2 pseudogene 44 pseudo RPS2P44 ribosomal protein S2 pseudogene 44 O - 20121230 -9606 100271250 RPS2P52 - RPS2_23_1615 HGNC:36059 19 19p13 ribosomal protein S2 pseudogene 52 pseudo RPS2P52 ribosomal protein S2 pseudogene 52 O - 20121230 -9606 100271251 RPS2P49 - RPS2_24_1542 HGNC:36521 17 17q21 ribosomal protein S2 pseudogene 49 pseudo RPS2P49 ribosomal protein S2 pseudogene 49 O - 20121230 -9606 100271252 RPS2P54 - RPS2_28_1709 HGNC:35835 20 20q13.1 ribosomal protein S2 pseudogene 54 pseudo RPS2P54 ribosomal protein S2 pseudogene 54 O - 20121230 -9606 100271253 RPS3AP24 - RPS3A_10_762 HGNC:36267 6 6q24.1 ribosomal protein S3a pseudogene 24 pseudo RPS3AP24 ribosomal protein S3a pseudogene 24 O - 20121230 -9606 100271254 RPS3AP30 - RPS3A_11_871 HGNC:35538 8 8p23 ribosomal protein S3a pseudogene 30 pseudo RPS3AP30 ribosomal protein S3a pseudogene 30 O - 20121230 -9606 100271255 RPS3AP27 - RPS3A_12_850 HGNC:35978 7 7q31 ribosomal protein S3a pseudogene 27 pseudo RPS3AP27 ribosomal protein S3a pseudogene 27 O - 20121230 -9606 100271256 RPS3AP31 - RPS3A_12_873 HGNC:36860 8 8p23.1 ribosomal protein S3a pseudogene 31 pseudo RPS3AP31 ribosomal protein S3a pseudogene 31 O - 20121209 -9606 100271257 RPS3AP28 - RPS3A_13_855 HGNC:35738 7 7q34 ribosomal protein S3a pseudogene 28 pseudo RPS3AP28 ribosomal protein S3a pseudogene 28 O - 20121230 -9606 100271258 RPS3AP32 - RPS3A_13_917 HGNC:36717 8 8q21.11 ribosomal protein S3a pseudogene 32 pseudo RPS3AP32 ribosomal protein S3a pseudogene 32 O - 20121230 -9606 100271259 RPS3AP33 - RPS3A_14_872 HGNC:35476 8 8p23 ribosomal protein S3a pseudogene 33 pseudo RPS3AP33 ribosomal protein S3a pseudogene 33 O - 20121230 -9606 100271260 RPS3AP34 - RPS3A_15_876 HGNC:36293 8 8p23.1 ribosomal protein S3a pseudogene 34 pseudo RPS3AP34 ribosomal protein S3a pseudogene 34 O - 20121230 -9606 100271261 RPS3AP35 - RPS3A_16_877 HGNC:35902 8 8p23.1 ribosomal protein S3a pseudogene 35 pseudo RPS3AP35 ribosomal protein S3a pseudogene 35 O - 20121230 -9606 100271262 RPS6P20 - RPS6_10_1296 HGNC:36940 12 12q24.33 ribosomal protein S6 pseudogene 20 pseudo RPS6P20 ribosomal protein S6 pseudogene 20 O - 20121230 -9606 100271263 RPS6P21 - RPS6_11_1297 HGNC:36478 12 12q24.33 ribosomal protein S6 pseudogene 21 pseudo RPS6P21 ribosomal protein S6 pseudogene 21 O - 20121230 -9606 100271267 RPSAP51 - RPSA_25_1205 HGNC:36224 12 12p13.31 ribosomal protein SA pseudogene 51 pseudo RPSAP51 ribosomal protein SA pseudogene 51 O - 20121230 -9606 100271271 RPL11P3 - RPL11_2_1077 HGNC:36342 10 10q23.3 ribosomal protein L11 pseudogene 3 pseudo RPL11P3 ribosomal protein L11 pseudogene 3 O - 20121230 -9606 100271272 RPL11P4 - RPL11_2_1080 HGNC:36137 10 10q24.1 ribosomal protein L11 pseudogene 4 pseudo RPL11P4 ribosomal protein L11 pseudogene 4 O - 20121230 -9606 100271273 RPL12P28 - RPL12_7_1019 HGNC:36818 10 10p ribosomal protein L12 pseudogene 28 pseudo RPL12P28 ribosomal protein L12 pseudogene 28 O - 20121230 -9606 100271274 RPL12P29 - RPL12_8_1073 HGNC:35791 10 10q23.1 ribosomal protein L12 pseudogene 29 pseudo RPL12P29 ribosomal protein L12 pseudogene 29 O - 20121230 -9606 100271276 RPL13AP11 - RPL13A_1_152 HGNC:36566 1 1q32.1 ribosomal protein L13a pseudogene 11 pseudo RPL13AP11 ribosomal protein L13a pseudogene 11 O - 20121230 -9606 100271277 RPL13AP12 - RPL13A_3_312 HGNC:35673 2 2q33-q34 ribosomal protein L13a pseudogene 12 pseudo RPL13AP12 ribosomal protein L13a pseudogene 12 O - 20121230 -9606 100271278 RPL13AP14 - RPL13A_3_590 HGNC:36360 5 5q14.3 ribosomal protein L13a pseudogene 14 pseudo RPL13AP14 ribosomal protein L13a pseudogene 14 O - 20121230 -9606 100271279 RPL13AP15 - RPL13A_4_746 HGNC:36883 6 6q22 ribosomal protein L13a pseudogene 15 pseudo RPL13AP15 ribosomal protein L13a pseudogene 15 O - 20121230 -9606 100271282 RPL14P4 - RPL14_2_1267 HGNC:35663 12 12q22 ribosomal protein L14 pseudogene 4 pseudo RPL14P4 ribosomal protein L14 pseudogene 4 O - 20121230 -9606 100271283 RPL15P14 - RPL15_7_1062 HGNC:36487 10 10q22.1 ribosomal protein L15 pseudogene 14 pseudo RPL15P14 ribosomal protein L15 pseudogene 14 O - 20121230 -9606 100271284 RPL17P35 - RPL17_9_1049 HGNC:35819 10 10q21.3 ribosomal protein L17 pseudogene 35 pseudo RPL17P35 ribosomal protein L17 pseudogene 35 O - 20121230 -9606 100271285 RPL18AP10 - RPL18A_4_806 HGNC:35885 7 7p14.1-p13 ribosomal protein L18a pseudogene 10 pseudo RPL18AP10 ribosomal protein L18a pseudogene 10 O - 20121230 -9606 100271286 RPL18P10 - RPL18_6_1311 HGNC:35957 13 13q14 ribosomal protein L18 pseudogene 10 pseudo RPL18P10 ribosomal protein L18 pseudogene 10 O - 20121230 -9606 100271287 RPL19P17 - RPL19_6_1208 HGNC:36829 12 12p13 ribosomal protein L19 pseudogene 17 pseudo RPL19P17 ribosomal protein L19 pseudogene 17 O - 20121230 -9606 100271288 RPL19P18 - RPL19_7_1512 HGNC:36121 17 17p12 ribosomal protein L19 pseudogene 18 pseudo RPL19P18 ribosomal protein L19 pseudogene 18 O - 20121230 -9606 100271289 RPL22P17 - RPL22_7_1091 HGNC:36985 10 10q24.3 ribosomal protein L22 pseudogene 17 pseudo RPL22P17 ribosomal protein L22 pseudogene 17 O - 20121230 -9606 100271290 RPL22P18 - RPL22_9_1070 HGNC:36232 10 10q23 ribosomal protein L22 pseudogene 18 pseudo RPL22P18 ribosomal protein L22 pseudogene 18 O - 20121230 -9606 100271291 RPL23AP22 - RPL23A_2_142 HGNC:35505 1 1q31.2 ribosomal protein L23a pseudogene 22 pseudo RPL23AP22 ribosomal protein L23a pseudogene 22 O - 20121230 -9606 100271292 RPL23AP23 - RPL23A_5_178 HGNC:36272 1 1q43 ribosomal protein L23a pseudogene 23 pseudo RPL23AP23 ribosomal protein L23a pseudogene 23 O - 20121230 -9606 100271293 RPL23AP33 - RPL23A_7_304 HGNC:36946 2 2q32.1 ribosomal protein L23a pseudogene 33 pseudo RPL23AP33 ribosomal protein L23a pseudogene 33 O - 20121230 -9606 100271294 RPL23AP34 - RPL23A_8_204 HGNC:36035 2 2p23.2 ribosomal protein L23a pseudogene 34 pseudo RPL23AP34 ribosomal protein L23a pseudogene 34 O - 20121230 -9606 100271295 RPL23AP35 - RPL23A_8_306 HGNC:36580 2 2q32.1 ribosomal protein L23a pseudogene 35 pseudo RPL23AP35 ribosomal protein L23a pseudogene 35 O - 20121230 -9606 100271296 RPL23AP36 - RPL23A_9_314 HGNC:35685 2 2q33.2 ribosomal protein L23a pseudogene 36 pseudo RPL23AP36 ribosomal protein L23a pseudogene 36 O - 20121230 -9606 100271297 RPL23P11 - RPL23_6_1032 HGNC:36457 10 10p11.22 ribosomal protein L23 pseudogene 11 pseudo RPL23P11 ribosomal protein L23 pseudogene 11 O - 20121230 -9606 100271298 RPL27AP3 - RPL27A_1_302 HGNC:35553 2 2q32.1 ribosomal protein L27a pseudogene 3 pseudo RPL27AP3 ribosomal protein L27a pseudogene 3 O - 20121230 -9606 100271299 RPL27AP4 - RPL27A_2_255 HGNC:36262 2 2q13 ribosomal protein L27a pseudogene 4 pseudo RPL27AP4 ribosomal protein L27a pseudogene 4 O - 20121230 -9606 100271300 RPL27AP5 - RPL27A_2_577 HGNC:36420 5 5q13.3 ribosomal protein L27a pseudogene 5 pseudo RPL27AP5 ribosomal protein L27a pseudogene 5 O - 20121230 -9606 100271301 RPL27AP7 - RPL27A_3_699 HGNC:36064 6 6p12 ribosomal protein L27a pseudogene 7 pseudo RPL27AP7 ribosomal protein L27a pseudogene 7 O - 20121230 -9606 100271302 RPL27P12 - RPL27_4_1293 HGNC:36736 12 12q24.31 ribosomal protein L27 pseudogene 12 pseudo RPL27P12 ribosomal protein L27 pseudogene 12 O - 20121230 -9606 100271303 RPL30P11 - RPL30_6_1213 HGNC:36260 12 12p13.1 ribosomal protein L30 pseudogene 11 pseudo RPL30P11 ribosomal protein L30 pseudogene 11 O - 20121230 -9606 100271304 RPL30P12 - RPL30_6_1274 HGNC:36909 12 12q23.3 ribosomal protein L30 pseudogene 12 pseudo RPL30P12 ribosomal protein L30 pseudogene 12 O - 20121230 -9606 100271305 RPL30P13 - RPL30_7_1228 HGNC:36280 12 12q12 ribosomal protein L30 pseudogene 13 pseudo RPL30P13 ribosomal protein L30 pseudogene 13 O - 20121230 -9606 100271306 RPL32P27 - RPL32_7_1234 HGNC:36924 12 12q13 ribosomal protein L32 pseudogene 27 pseudo RPL32P27 ribosomal protein L32 pseudogene 27 O - 20121230 -9606 100271308 RPL34P20 - RPL34_8_1088 HGNC:35535 10 10q24 ribosomal protein L34 pseudogene 20 pseudo RPL34P20 ribosomal protein L34 pseudogene 20 O - 20121230 -9606 100271309 RPL34P24 - RPL34_9_1123 HGNC:36823 11 11p15.5-p14 ribosomal protein L34 pseudogene 24 pseudo RPL34P24 ribosomal protein L34 pseudogene 24 O - 20121230 -9606 100271310 RPL35AP8 - RPL35A_1_367 HGNC:36976 3 3p21 ribosomal protein L35a pseudogene 8 pseudo RPL35AP8 ribosomal protein L35a pseudogene 8 O - 20121230 -9606 100271311 RPL35AP9 - RPL35A_2_427 HGNC:35643 3 3q25.32 ribosomal protein L35a pseudogene 9 pseudo RPL35AP9 ribosomal protein L35a pseudogene 9 O - 20121230 -9606 100271312 RPL35AP6 - RPL35A_3_191 HGNC:36793 1 1q44 ribosomal protein L35a pseudogene 6 pseudo RPL35AP6 ribosomal protein L35a pseudogene 6 O - 20121230 -9606 100271313 RPL35AP10 - RPL35A_3_429 HGNC:35905 3 3q26.1 ribosomal protein L35a pseudogene 10 pseudo RPL35AP10 ribosomal protein L35a pseudogene 10 O - 20121230 -9606 100271314 RPL35AP11 - RPL35A_4_500 HGNC:35708 4 4q22 ribosomal protein L35a pseudogene 11 pseudo RPL35AP11 ribosomal protein L35a pseudogene 11 O - 20121230 -9606 100271315 RPL35AP14 - RPL35A_4_569 HGNC:36783 5 5q12.1 ribosomal protein L35a pseudogene 14 pseudo RPL35AP14 ribosomal protein L35a pseudogene 14 O - 20121230 -9606 100271316 RPL35AP12 - RPL35A_5_531 HGNC:36068 4 4q32.2 ribosomal protein L35a pseudogene 12 pseudo RPL35AP12 ribosomal protein L35a pseudogene 12 O - 20121230 -9606 100271317 RPL35AP15 - RPL35A_6_605 HGNC:36974 5 5q23.1 ribosomal protein L35a pseudogene 15 pseudo RPL35AP15 ribosomal protein L35a pseudogene 15 O - 20121230 -9606 100271318 RPL35AP16 - RPL35A_6_624 HGNC:35485 5 5q32 ribosomal protein L35a pseudogene 16 pseudo RPL35AP16 ribosomal protein L35a pseudogene 16 O - 20121230 -9606 100271319 RPL35AP17 - RPL35A_7_625 HGNC:36384 5 5q32 ribosomal protein L35a pseudogene 17 pseudo RPL35AP17 ribosomal protein L35a pseudogene 17 O - 20121230 -9606 100271321 RPL35AP18 - RPL35A_8_717 HGNC:36812 6 6q14 ribosomal protein L35a pseudogene 18 pseudo RPL35AP18 ribosomal protein L35a pseudogene 18 O - 20121230 -9606 100271322 RPL35AP19 - RPL35A_8_947 HGNC:36631 8 8q24.12 ribosomal protein L35a pseudogene 19 pseudo RPL35AP19 ribosomal protein L35a pseudogene 19 O - 20121230 -9606 100271323 RPL36AP13 - RPL36A_3_200 HGNC:35877 2 2pter-p25.1 ribosomal protein L36a pseudogene 13 pseudo RPL36AP13 ribosomal protein L36a pseudogene 13 O - 20121230 -9606 100271324 RPL36AP14 - RPL36A_3_214 HGNC:36788 2 2p21-p16 ribosomal protein L36a pseudogene 14 pseudo RPL36AP14 ribosomal protein L36a pseudogene 14 O - 20121230 -9606 100271325 RPL36AP15 - RPL36A_4_216 HGNC:36648 2 2p16 ribosomal protein L36a pseudogene 15 pseudo RPL36AP15 ribosomal protein L36a pseudogene 15 O - 20121230 -9606 100271326 RPL36AP17 - RPL36A_4_361 HGNC:35750 3 3p22.3 ribosomal protein L36a pseudogene 17 pseudo RPL36AP17 ribosomal protein L36a pseudogene 17 O - 20121230 -9606 100271327 RPL36AP16 - RPL36A_5_238 HGNC:36416 2 2p14 ribosomal protein L36a pseudogene 16 pseudo RPL36AP16 ribosomal protein L36a pseudogene 16 O - 20121230 -9606 100271328 RPL36AP18 - RPL36A_5_491 HGNC:35484 4 4q21.1 ribosomal protein L36a pseudogene 18 pseudo RPL36AP18 ribosomal protein L36a pseudogene 18 O - 20121230 -9606 100271329 RPL36AP20 - RPL36A_6_630 HGNC:36250 5 5q33.1 ribosomal protein L36a pseudogene 20 pseudo RPL36AP20 ribosomal protein L36a pseudogene 20 O - 20121230 -9606 100271330 RPL36AP19 - RPL36A_7_509 HGNC:36436 4 4q25 ribosomal protein L36a pseudogene 19 pseudo RPL36AP19 ribosomal protein L36a pseudogene 19 O - 20121230 -9606 100271331 RPL36AP25 - RPL36A_7_666 HGNC:35926 6 6p22.3 ribosomal protein L36a pseudogene 25 pseudo RPL36AP25 ribosomal protein L36a pseudogene 25 O - 20121230 -9606 100271332 RPL36AP21 - RPL36A_8_545 HGNC:37041 5 5p15.1 ribosomal protein L36a pseudogene 21 pseudo RPL36AP21 ribosomal protein L36a pseudogene 21 O - 20121230 -9606 100271334 RPL36P15 - RPL36_6_1283 HGNC:36787 12 12q24.22 ribosomal protein L36 pseudogene 15 pseudo RPL36P15 ribosomal protein L36 pseudogene 15 O - 20121230 -9606 100271336 RPL36P17 - RPL36_8_1743 HGNC:35884 22 22q12.2 ribosomal protein L36 pseudogene 17 pseudo RPL36P17 ribosomal protein L36 pseudogene 17 O - 20121230 -9606 100271337 RPL37AP2 - RPL37A_1_476 HGNC:36880 4 4q12 ribosomal protein L37a pseudogene 2 pseudo RPL37AP2 ribosomal protein L37a pseudogene 2 O - 20121230 -9606 100271338 RPL37AP4 - RPL37A_2_776 HGNC:35586 6 6q26 ribosomal protein L37a pseudogene 4 pseudo RPL37AP4 ribosomal protein L37a pseudogene 4 O - 20121230 -9606 100271339 RPL37AP6 - RPL37A_3_833 HGNC:36824 7 7q22-q31 ribosomal protein L37a pseudogene 6 pseudo RPL37AP6 ribosomal protein L37a pseudogene 6 O - 20121230 -9606 100271340 RPL37P20 - RPL37_6_1200 HGNC:36562 12 12p13 ribosomal protein L37 pseudogene 20 pseudo RPL37P20 ribosomal protein L37 pseudogene 20 O - 20121230 -9606 100271341 RPL37P22 - RPL37_7_1538 HGNC:37019 17 17q12 ribosomal protein L37 pseudogene 22 pseudo RPL37P22 ribosomal protein L37 pseudogene 22 O - 20121230 -9606 100271342 RPL37P18 - RPL37_8_1033 HGNC:35919 10 10p11.22-p11.21 ribosomal protein L37 pseudogene 18 pseudo RPL37P18 ribosomal protein L37 pseudogene 18 O - 20121230 -9606 100271343 UBA52P8 - RPL40_3_1481 HGNC:35625 16 16q12 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 8 pseudo UBA52P8 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 8 O - 20121230 -9606 100271344 UBA52P9 - RPL40_4_1591 HGNC:36169 18 18q11.2-q12.1 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 9 pseudo UBA52P9 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 9 O - 20121230 -9606 100271346 RPLP1P10 - RPLP1_6_1047 HGNC:35509 10 10q11 ribosomal protein, large, P1 pseudogene 10 pseudo RPLP1P10 ribosomal protein, large, P1 pseudogene 10 O - 20121230 -9606 100271347 RPLP2P4 - RPLP2_3_1225 HGNC:36837 12 12p11.21 ribosomal protein, large, P2 pseudogene 4 pseudo RPLP2P4 ribosomal protein, large, P2 pseudogene 4 O - 20121230 -9606 100271348 RPLP2P5 - RPLP2_4_1568 HGNC:35706 17 17q23.2 ribosomal protein, large, P2 pseudogene 5 pseudo RPLP2P5 ribosomal protein, large, P2 pseudogene 5 O - 20121230 -9606 100271349 RPS10P18 - RPS10_6_1108 HGNC:36239 10 10q26 ribosomal protein S10 pseudogene 18 pseudo RPS10P18 ribosomal protein S10 pseudogene 18 O - 20121230 -9606 100271350 RPS10P19 - RPS10_7_1142 HGNC:35907 11 11p11.2 ribosomal protein S10 pseudogene 19 pseudo RPS10P19 ribosomal protein S10 pseudogene 19 O - 20121230 -9606 100271351 RPS10P21 - RPS10_8_1322 HGNC:35906 13 13q21.33 ribosomal protein S10 pseudogene 21 pseudo RPS10P21 ribosomal protein S10 pseudogene 21 O - 20121230 -9606 100271352 RPS12P16 - RPS12_7_1034 HGNC:36595 10 10p11.22-p11.21 ribosomal protein S12 pseudogene 16 pseudo RPS12P16 ribosomal protein S12 pseudogene 16 O - 20121230 -9606 100271353 RPS12P17 - RPS12_8_1057 HGNC:35705 10 10q21.1 ribosomal protein S12 pseudogene 17 pseudo RPS12P17 ribosomal protein S12 pseudogene 17 O - 20121230 -9606 100271354 RPS12P18 - RPS12P19|RPS12_8_1068|RPS12_9_1069 HGNC:36421 10 10q22.3 ribosomal protein S12 pseudogene 18 pseudo RPS12P18 ribosomal protein S12 pseudogene 18 O - 20121230 -9606 100271357 RPS15AP21 - RPS15A_6_747 HGNC:36142 6 6q22.31 ribosomal protein S15a pseudogene 21 pseudo RPS15AP21 ribosomal protein S15a pseudogene 21 O - 20121230 -9606 100271358 RPS15AP16 - RPS15A_7_402 HGNC:36764 3 3q21.3 ribosomal protein S15a pseudogene 16 pseudo RPS15AP16 ribosomal protein S15a pseudogene 16 O - 20121230 -9606 100271359 RPS15AP26 - RPS15A_7_928 HGNC:36773 8 8q22.1 ribosomal protein S15a pseudogene 26 pseudo RPS15AP26 ribosomal protein S15a pseudogene 26 O - 20121230 -9606 100271360 RPS15AP18 - RPS15A_9_644 HGNC:36524 5 5q35.3 ribosomal protein S15a pseudogene 18 pseudo RPS15AP18 ribosomal protein S15a pseudogene 18 O - 20121230 -9606 100271361 RPS15P7 - RPS15_4_1197 HGNC:36623 12 12p13 ribosomal protein S15 pseudogene 7 pseudo RPS15P7 ribosomal protein S15 pseudogene 7 O - 20121230 -9606 100271362 RPS16P6 - RPS16_3_1149 HGNC:36741 11 11q13 ribosomal protein S16 pseudogene 6 pseudo RPS16P6 ribosomal protein S16 pseudogene 6 O - 20121230 -9606 100271363 RPS17P15 - RPS17_7_1173 HGNC:35931 11 11q23.1 ribosomal protein S17 pseudogene 15 pseudo RPS17P15 ribosomal protein S17 pseudogene 15 O - 20121230 -9606 100271364 RPS18P13 - RPS18_8_1634 HGNC:36901 19 19p13.1 ribosomal protein S18 pseudogene 13 pseudo RPS18P13 ribosomal protein S18 pseudogene 13 O - 20121230 -9606 100271365 RPS21P6 - RPS21_3_1599 HGNC:36317 18 18q21.1 ribosomal protein S21 pseudogene 6 pseudo RPS21P6 ribosomal protein S21 pseudogene 6 O - 20121230 -9606 100271366 RPS21P7 - RPS21_4_1681 HGNC:35577 20 20p13 ribosomal protein S21 pseudogene 7 pseudo RPS21P7 ribosomal protein S21 pseudogene 7 O - 20121230 -9606 100271367 RPS23P6 - RPS23_4_1473 HGNC:36511 16 16p13.13 ribosomal protein S23 pseudogene 6 pseudo RPS23P6 ribosomal protein S23 pseudogene 6 O - 20121230 -9606 100271371 RPS24P18 - RPS24_8_1590 HGNC:36745 18 18q11.2 ribosomal protein S24 pseudogene 18 pseudo RPS24P18 ribosomal protein S24 pseudogene 18 O - 20121230 -9606 100271372 RPS25P10 - RPS25_3_1755 HGNC:36078 22 22q13.1 ribosomal protein S25 pseudogene 10 pseudo RPS25P10 ribosomal protein S25 pseudogene 10 O - 20121230 -9606 100271373 RPS25P9 - RPS25_7_1060 HGNC:36936 10 10q22 ribosomal protein S25 pseudogene 9 pseudo RPS25P9 ribosomal protein S25 pseudogene 9 O - 20121230 -9606 100271374 RPS27AP5 - RPS27A_1_141 HGNC:36867 1 1q31.2 ribosomal protein S27a pseudogene 5 pseudo RPS27AP5 ribosomal protein S27a pseudogene 5 O - 20121230 -9606 100271375 RPS27AP8 - RPS27A_2_437 HGNC:36361 3 3q26.31 ribosomal protein S27a pseudogene 8 pseudo RPS27AP8 ribosomal protein S27a pseudogene 8 O - 20121230 -9606 100271376 RPS27AP9 - RPS27A_3_585 HGNC:35630 5 5q14 ribosomal protein S27a pseudogene 9 pseudo RPS27AP9 ribosomal protein S27a pseudogene 9 O - 20121230 -9606 100271377 RPS27AP10 - RPS27A_3_621 HGNC:36570 5 5q31 ribosomal protein S27a pseudogene 10 pseudo RPS27AP10 ribosomal protein S27a pseudogene 10 O - 20121230 -9606 100271378 RPS27AP14 - RPS27A_5_955 HGNC:36530 9 9p24.3 ribosomal protein S27a pseudogene 14 pseudo RPS27AP14 ribosomal protein S27a pseudogene 14 O - 20121230 -9606 100271379 RPS27AP15 - RPS27A_6_985 HGNC:35817 9 9q21.12 ribosomal protein S27a pseudogene 15 pseudo RPS27AP15 ribosomal protein S27a pseudogene 15 O - 20121230 -9606 100271380 RPS27P18 - RPS27_6_1109 HGNC:36296 10 10q26.13 ribosomal protein S27 pseudogene 18 pseudo RPS27P18 ribosomal protein S27 pseudogene 18 O - 20121230 -9606 100271381 RPS28P8 - RPS28_4_1309 HGNC:36938 13 13q14.11 ribosomal protein S28 pseudogene 8 pseudo RPS28P8 ribosomal protein S28 pseudogene 8 O - 20121230 -9606 100271383 RPS29P19 - RPS29_4_1178 HGNC:36118 11 11q23 ribosomal protein S29 pseudogene 19 pseudo RPS29P19 ribosomal protein S29 pseudogene 19 O - 20121230 -9606 100271384 RPS29P22 - RPS29_6_1530 HGNC:35799 17 17q11.2 ribosomal protein S29 pseudogene 22 pseudo RPS29P22 ribosomal protein S29 pseudogene 22 O - 20121230 -9606 100271385 RPS4XP12 - RPS4P12|RPS4X_4_1183 HGNC:35951 11 11q23.3 ribosomal protein S4X pseudogene 12 pseudo RPS4XP12 ribosomal protein S4X pseudogene 12 O - 20121230 -9606 100271386 RPS4XP20 - RPS4P20|RPS4X_9_1648 HGNC:36437 19 19q13.11 ribosomal protein S4X pseudogene 20 pseudo RPS4XP20 ribosomal protein S4X pseudogene 20 O - 20121230 -9606 100271387 RPL12P43 - RPL12_24_1805 HGNC:35840 X Xq24 ribosomal protein L12 pseudogene 43 pseudo RPL12P43 ribosomal protein L12 pseudogene 43 O - 20121230 -9606 100271388 RPL17P49 - RPL17_20_1764 HGNC:37009 X Xp22.2 ribosomal protein L17 pseudogene 49 pseudo RPL17P49 ribosomal protein L17 pseudogene 49 O - 20121230 -9606 100271389 RPL21P81 - RPL21_35_1017 HGNC:35530 9 9q34 ribosomal protein L21 pseudogene 81 pseudo RPL21P81 ribosomal protein L21 pseudogene 81 O - 20121230 -9606 100271390 RPL21P132 - RPL21_62_1798 HGNC:35865 X Xq22 ribosomal protein L21 pseudogene 132 pseudo RPL21P132 ribosomal protein L21 pseudogene 132 O - 20121230 -9606 100271391 RPL21P133 - RPL21_63_1815 HGNC:36003 X Xq26 ribosomal protein L21 pseudogene 133 pseudo RPL21P133 ribosomal protein L21 pseudogene 133 O - 20121230 -9606 100271392 RPL31P63 - RPL31_36_1782 HGNC:35666 X Xq13.1 ribosomal protein L31 pseudogene 63 pseudo RPL31P63 ribosomal protein L31 pseudogene 63 O - 20121230 -9606 100271393 RPL32P35 - RPL32_11_1810 HGNC:36547 X Xq25 ribosomal protein L32 pseudogene 35 pseudo RPL32P35 ribosomal protein L32 pseudogene 35 O - 20121230 -9606 100271394 RPL36P18 - RPL36_10_1804 HGNC:36856 X Xq23 ribosomal protein L36 pseudogene 18 pseudo RPL36P18 ribosomal protein L36 pseudogene 18 O - 20121230 -9606 100271395 RPL37P24 - RPL37_11_1779 HGNC:36201 X Xp11.22 ribosomal protein L37 pseudogene 24 pseudo RPL37P24 ribosomal protein L37 pseudogene 24 O - 20121230 -9606 100271396 RPL39P24 - RPL39_11_1016 HGNC:36431 9 9q34.13 ribosomal protein L39 pseudogene 24 pseudo RPL39P24 ribosomal protein L39 pseudogene 24 O - 20121230 -9606 100271397 RPL39P42 - RPL39_23_1806 HGNC:36204 X Xq24 ribosomal protein L39 pseudogene 42 pseudo RPL39P42 ribosomal protein L39 pseudogene 42 O - 20121230 -9606 100271398 RPL7AP44 - RPL7A_21_1001 HGNC:36645 9 9q31.2 ribosomal protein L7a pseudogene 44 pseudo RPL7AP44 ribosomal protein L7a pseudogene 44 O - 20121230 -9606 100271399 RPL7AP71 - RPL7A_33_1780 HGNC:35754 X Xp11.22 ribosomal protein L7a pseudogene 71 pseudo RPL7AP71 ribosomal protein L7a pseudogene 71 O - 20121230 -9606 100271400 RPS26P56 - RPS26_23_1811 HGNC:35858 X Xq25 ribosomal protein S26 pseudogene 56 pseudo RPS26P56 ribosomal protein S26 pseudogene 56 O - 20121230 -9606 100271401 RPS26P57 - RPS26_34_1808 HGNC:36537 X Xq25 ribosomal protein S26 pseudogene 57 pseudo RPS26P57 ribosomal protein S26 pseudogene 57 O - 20121230 -9606 100271402 RPS29P28 - RPS29_22_1795 HGNC:36830 X Xq21.33 ribosomal protein S29 pseudogene 28 pseudo RPS29P28 ribosomal protein S29 pseudogene 28 O - 20121230 -9606 100271404 RPL12P26 - RPL12_10_1101 HGNC:36811 10 10q25 ribosomal protein L12 pseudogene 26 pseudo RPL12P26 ribosomal protein L12 pseudogene 26 O - 20121230 -9606 100271405 RPL12P30 - RPL12_11_1132 HGNC:35970 11 11p13 ribosomal protein L12 pseudogene 30 pseudo RPL12P30 ribosomal protein L12 pseudogene 30 O - 20121230 -9606 100271406 RPL12P31 - RPL12_11_1136 HGNC:37025 11 11p13 ribosomal protein L12 pseudogene 31 pseudo RPL12P31 ribosomal protein L12 pseudogene 31 O - 20121230 -9606 100271407 RPL12P34 - RPL12_14_1319 HGNC:36168 13 13q21.33 ribosomal protein L12 pseudogene 34 pseudo RPL12P34 ribosomal protein L12 pseudogene 34 O - 20121230 -9606 100271408 RPL12P36 - RPL12_17_1486 HGNC:36598 16 16q21 ribosomal protein L12 pseudogene 36 pseudo RPL12P36 ribosomal protein L12 pseudogene 36 O - 20121230 -9606 100271410 RPL12P39 - RPL12_20_1611 HGNC:35976 18 18q22.1 ribosomal protein L12 pseudogene 39 pseudo RPL12P39 ribosomal protein L12 pseudogene 39 O - 20121230 -9606 100271411 RPL17P37 - RPL17_12_1285 HGNC:36854 12 12q24.23 ribosomal protein L17 pseudogene 37 pseudo RPL17P37 ribosomal protein L17 pseudogene 37 O - 20121230 -9606 100271413 RPL17P40 - RPL17_15_1477 HGNC:36672 16 16p13 ribosomal protein L17 pseudogene 40 pseudo RPL17P40 ribosomal protein L17 pseudogene 40 O - 20121230 -9606 100271414 RPL17P45 - RPL17_16_1598 HGNC:35618 18 18q12.3 ribosomal protein L17 pseudogene 45 pseudo RPL17P45 ribosomal protein L17 pseudogene 45 O - 20121230 -9606 100271415 RPL17P47 - RPL17_17_1624 HGNC:36089 19 19p13.2 ribosomal protein L17 pseudogene 47 pseudo RPL17P47 ribosomal protein L17 pseudogene 47 O - 20121230 -9606 100271416 RPL17P48 - RPL17_19_1717 HGNC:36997 20 20q13.33 ribosomal protein L17 pseudogene 48 pseudo RPL17P48 ribosomal protein L17 pseudogene 48 O - 20121230 -9606 100271417 RPL17P38 - RPL17_22_1275 HGNC:36219 12 12q23.3 ribosomal protein L17 pseudogene 38 pseudo RPL17P38 ribosomal protein L17 pseudogene 38 O - 20121230 -9606 100271418 RPL17P42 - RPL17_25_1540 HGNC:36749 17 17q12 ribosomal protein L17 pseudogene 42 pseudo RPL17P42 ribosomal protein L17 pseudogene 42 O - 20121230 -9606 100271419 RPL17P46 - RPL17_27_1601 HGNC:36202 18 18q21 ribosomal protein L17 pseudogene 46 pseudo RPL17P46 ribosomal protein L17 pseudogene 46 O - 20121230 -9606 100271420 RPL18AP14 - RPL18A_9_1800 HGNC:36624 X Xq22.3 ribosomal protein L18a pseudogene 14 pseudo RPL18AP14 ribosomal protein L18a pseudogene 14 O - 20121230 -9606 100271421 RPL21P88 - RPL21_36_1036 HGNC:35714 10 10q11.21 ribosomal protein L21 pseudogene 88 pseudo RPL21P88 ribosomal protein L21 pseudogene 88 O - 20121230 -9606 100271422 RPL21P89 - RPL21_37_1041 HGNC:36474 10 10q11.23 ribosomal protein L21 pseudogene 89 pseudo RPL21P89 ribosomal protein L21 pseudogene 89 O - 20121230 -9606 100271423 RPL21P90 - RPL21_37_1084 HGNC:35548 10 10q23.33 ribosomal protein L21 pseudogene 90 pseudo RPL21P90 ribosomal protein L21 pseudogene 90 O - 20121230 -9606 100271424 RPL21P91 - RPL21_39_1094 HGNC:36450 10 10q25.1 ribosomal protein L21 pseudogene 91 pseudo RPL21P91 ribosomal protein L21 pseudogene 91 O - 20121230 -9606 100271425 RPL21P94 - RPL21_39_1117 HGNC:35568 11 11p15 ribosomal protein L21 pseudogene 94 pseudo RPL21P94 ribosomal protein L21 pseudogene 94 O - 20121230 -9606 100271427 RPL21P95 - RPL21_40_1159 HGNC:36097 11 11q14.1 ribosomal protein L21 pseudogene 95 pseudo RPL21P95 ribosomal protein L21 pseudogene 95 O - 20121230 -9606 100271428 RPL21P96 - RPL21_41_1169 HGNC:36790 11 11q22.3 ribosomal protein L21 pseudogene 96 pseudo RPL21P96 ribosomal protein L21 pseudogene 96 O - 20121230 -9606 100271429 RPL21P99 - RPL21_41_1222 HGNC:36628 12 12p11.22 ribosomal protein L21 pseudogene 99 pseudo RPL21P99 ribosomal protein L21 pseudogene 99 O - 20121230 -9606 100271430 RPL21P100 - RPL21_42_1206 HGNC:36048 12 12p13.2 ribosomal protein L21 pseudogene 100 pseudo RPL21P100 ribosomal protein L21 pseudogene 100 O - 20121230 -9606 100271431 RPL21P101 - RPL21_42_1230 HGNC:35733 12 12q12 ribosomal protein L21 pseudogene 101 pseudo RPL21P101 ribosomal protein L21 pseudogene 101 O - 20121230 -9606 100271432 RPL21P102 - RPL21_43_1219 HGNC:36295 12 12p12.1 ribosomal protein L21 pseudogene 102 pseudo RPL21P102 ribosomal protein L21 pseudogene 102 O - 20121230 -9606 100271433 RPL21P103 - RPL21_44_1241 HGNC:36732 12 12q14.1 ribosomal protein L21 pseudogene 103 pseudo RPL21P103 ribosomal protein L21 pseudogene 103 O - 20121230 -9606 100271434 RPL21P108 - RPL21_44_1324 HGNC:35496 13 13q22.1 ribosomal protein L21 pseudogene 108 pseudo RPL21P108 ribosomal protein L21 pseudogene 108 O - 20121230 -9606 100271435 RPL21P104 - RPL21_45_1243 HGNC:36918 12 12q14.1 ribosomal protein L21 pseudogene 104 pseudo RPL21P104 ribosomal protein L21 pseudogene 104 O - 20121230 -9606 100271437 RPL21P109 - RPL21_49_1320 HGNC:36388 13 13q22 ribosomal protein L21 pseudogene 109 pseudo RPL21P109 ribosomal protein L21 pseudogene 109 O - 20121230 -9606 100271438 RPL21P110 - RPL21_50_1323 HGNC:35627 13 13q22.1 ribosomal protein L21 pseudogene 110 pseudo RPL21P110 ribosomal protein L21 pseudogene 110 O - 20121230 -9606 100271439 RPL21P111 - RPL21_51_1327 HGNC:36564 13 13q31.1 ribosomal protein L21 pseudogene 111 pseudo RPL21P111 ribosomal protein L21 pseudogene 111 O - 20121230 -9606 100271440 RPL21P113 - RPL21_51_1437 HGNC:36563 15 15q21 ribosomal protein L21 pseudogene 113 pseudo RPL21P113 ribosomal protein L21 pseudogene 113 O - 20121230 -9606 100271441 RPL21P114 - RPL21_52_1438 HGNC:36776 15 15q22.2 ribosomal protein L21 pseudogene 114 pseudo RPL21P114 ribosomal protein L21 pseudogene 114 O - 20121230 -9606 100271443 RPL21P115 - RPL21_54_1451 HGNC:35878 15 15q22 ribosomal protein L21 pseudogene 115 pseudo RPL21P115 ribosomal protein L21 pseudogene 115 O - 20121230 -9606 100271444 RPL21P116 - RPL21_55_1456 HGNC:36101 15 15q24 ribosomal protein L21 pseudogene 116 pseudo RPL21P116 ribosomal protein L21 pseudogene 116 O - 20121230 -9606 100271445 RPL21P121 - RPL21_56_1523 HGNC:36429 17 17p11.2 ribosomal protein L21 pseudogene 121 pseudo RPL21P121 ribosomal protein L21 pseudogene 121 O - 20121230 -9606 100271446 RPL21P118 - RPL21_57_1497 HGNC:35954 16 16q22.3 ribosomal protein L21 pseudogene 118 pseudo RPL21P118 ribosomal protein L21 pseudogene 118 O - 20121230 -9606 100271447 RPL21P122 - RPL21_58_1515 HGNC:36990 17 17p12 ribosomal protein L21 pseudogene 122 pseudo RPL21P122 ribosomal protein L21 pseudogene 122 O - 20121230 -9606 100271448 RPL21P123 - RPL21_59_1535 HGNC:35691 17 17p11.2 ribosomal protein L21 pseudogene 123 pseudo RPL21P123 ribosomal protein L21 pseudogene 123 O - 20121230 -9606 100271449 RPL21P126 - RPL21_59_1605 HGNC:35959 18 18q21.2 ribosomal protein L21 pseudogene 126 pseudo RPL21P126 ribosomal protein L21 pseudogene 126 O - 20121230 -9606 100271450 RPL21P124 - RPL21_60_1556 HGNC:36060 17 17q21 ribosomal protein L21 pseudogene 124 pseudo RPL21P124 ribosomal protein L21 pseudogene 124 O - 20121230 -9606 100271451 RPL21P129 - RPL21_60_1619 HGNC:36747 19 19p13 ribosomal protein L21 pseudogene 129 pseudo RPL21P129 ribosomal protein L21 pseudogene 129 O - 20121230 -9606 100271452 RPL21P127 - RPL21_61_1581 HGNC:36099 18 18p11.3 ribosomal protein L21 pseudogene 127 pseudo RPL21P127 ribosomal protein L21 pseudogene 127 O - 20121230 -9606 100271453 RPL21P130 - RPL21_63_1633 HGNC:36453 19 19p13.2 ribosomal protein L21 pseudogene 130 pseudo RPL21P130 ribosomal protein L21 pseudogene 130 O - 20121230 -9606 100271455 RPL22P21 - RPL22_11_1520 HGNC:35547 17 17p12 ribosomal protein L22 pseudogene 21 pseudo RPL22P21 ribosomal protein L22 pseudogene 21 O - 20121230 -9606 100271456 RPL23AP27 - RPL23A_10_252 HGNC:36497 2 2q12.1 ribosomal protein L23a pseudogene 27 pseudo RPL23AP27 ribosomal protein L23a pseudogene 27 O - 20121230 -9606 100271457 RPL23AP28 - RPL23A_10_329 HGNC:36727 2 2q36.3 ribosomal protein L23a pseudogene 28 pseudo RPL23AP28 ribosomal protein L23a pseudogene 28 O - 20121230 -9606 100271458 RPL23AP29 - RPL23A_11_287 HGNC:36355 2 2q23.3 ribosomal protein L23a pseudogene 29 pseudo RPL23AP29 ribosomal protein L23a pseudogene 29 O - 20121230 -9606 100271459 RPL23AP30 - RPL23A_12_308 HGNC:35617 2 2q31.3 ribosomal protein L23a pseudogene 30 pseudo RPL23AP30 ribosomal protein L23a pseudogene 30 O - 20121230 -9606 100271460 RPL23AP31 - RPL23A_13_326 HGNC:35777 2 2q33 ribosomal protein L23a pseudogene 31 pseudo RPL23AP31 ribosomal protein L23a pseudogene 31 O - 20121230 -9606 100271461 RPL23AP39 - RPL23A_15_341 HGNC:36470 3 3p26.3 ribosomal protein L23a pseudogene 39 pseudo RPL23AP39 ribosomal protein L23a pseudogene 39 O - 20121230 -9606 100271462 RPL23AP40 - RPL23A_17_408 HGNC:35587 3 3q22.3 ribosomal protein L23a pseudogene 40 pseudo RPL23AP40 ribosomal protein L23a pseudogene 40 O - 20121230 -9606 100271464 RPL23AP51 - RPL23A_18_782 HGNC:36040 7 7p22 ribosomal protein L23a pseudogene 51 pseudo RPL23AP51 ribosomal protein L23a pseudogene 51 O - 20121230 -9606 100271465 RPL23AP52 - RPL23A_19_784 HGNC:36723 7 7p21.3 ribosomal protein L23a pseudogene 52 pseudo RPL23AP52 ribosomal protein L23a pseudogene 52 O - 20121230 -9606 100271466 RPL23AP54 - RPL23A_22_870 HGNC:36689 8 8p23.2 ribosomal protein L23a pseudogene 54 pseudo RPL23AP54 ribosomal protein L23a pseudogene 54 O - 20121230 -9606 100271467 RPL23AP55 - RPL23A_23_884 HGNC:35997 8 8p21 ribosomal protein L23a pseudogene 55 pseudo RPL23AP55 ribosomal protein L23a pseudogene 55 O - 20121230 -9606 100271469 RPL26P31 - RPL26_11_1166 HGNC:36907 11 11q21-q22 ribosomal protein L26 pseudogene 31 pseudo RPL26P31 ribosomal protein L26 pseudogene 31 O - 20121230 -9606 100271470 RPL26P34 - RPL26_13_1302 HGNC:36249 13 13q12.12 ribosomal protein L26 pseudogene 34 pseudo RPL26P34 ribosomal protein L26 pseudogene 34 O - 20121230 -9606 100271471 RPL26P27 - RPL26_15_1055 HGNC:36735 10 10q21 ribosomal protein L26 pseudogene 27 pseudo RPL26P27 ribosomal protein L26 pseudogene 27 O - 20121230 -9606 100271472 RPL29P22 - RPL29_12_1148 HGNC:35675 11 11q11 ribosomal protein L29 pseudogene 22 pseudo RPL29P22 ribosomal protein L29 pseudogene 22 O - 20121230 -9606 100271474 RPL29P29 - RPL29_18_1328 HGNC:36577 13 13q31.2 ribosomal protein L29 pseudogene 29 pseudo RPL29P29 ribosomal protein L29 pseudogene 29 O - 20121230 -9606 100271475 RPL31P51 - RPL31_17_1239 HGNC:35600 12 12q13 ribosomal protein L31 pseudogene 51 pseudo RPL31P51 ribosomal protein L31 pseudogene 51 O - 20121230 -9606 100271476 RPL31P52 - RPL31_18_1289 HGNC:36607 12 12q24.2 ribosomal protein L31 pseudogene 52 pseudo RPL31P52 ribosomal protein L31 pseudogene 52 O - 20121230 -9606 100271477 RPL31P53 - RPL31_19_1315 HGNC:35749 13 13q21.1 ribosomal protein L31 pseudogene 53 pseudo RPL31P53 ribosomal protein L31 pseudogene 53 O - 20121230 -9606 100271478 RPL31P56 - RPL31_20_1484 HGNC:36336 16 16q11.2-q13 ribosomal protein L31 pseudogene 56 pseudo RPL31P56 ribosomal protein L31 pseudogene 56 O - 20121230 -9606 100271479 RPL31P46 - RPL31_23_1157 HGNC:35559 11 11q13.4 ribosomal protein L31 pseudogene 46 pseudo RPL31P46 ribosomal protein L31 pseudogene 46 O - 20121230 -9606 100271480 RPL31P59 - RPL31_23_1580 HGNC:36975 18 18p11.3 ribosomal protein L31 pseudogene 59 pseudo RPL31P59 ribosomal protein L31 pseudogene 59 O - 20121230 -9606 100271481 RPL31P47 - RPL31_24_1186 HGNC:36124 11 11q24.1 ribosomal protein L31 pseudogene 47 pseudo RPL31P47 ribosomal protein L31 pseudogene 47 O - 20121230 -9606 100271482 RPL31P62 - RPL31_26_1736 HGNC:36569 22 22q11.1 ribosomal protein L31 pseudogene 62 pseudo RPL31P62 ribosomal protein L31 pseudogene 62 O - 20121230 -9606 100271483 RPL31P54 - RPL31_27_1326 HGNC:36077 13 13q22.3 ribosomal protein L31 pseudogene 54 pseudo RPL31P54 ribosomal protein L31 pseudogene 54 O - 20121230 -9606 100271485 RPL31P58 - RPL31_32_1533 HGNC:35862 17 17q11 ribosomal protein L31 pseudogene 58 pseudo RPL31P58 ribosomal protein L31 pseudogene 58 O - 20121230 -9606 100271486 RPL31P60 - RPL31_33_1645 HGNC:36123 19 19q13.11 ribosomal protein L31 pseudogene 60 pseudo RPL31P60 ribosomal protein L31 pseudogene 60 O - 20121230 -9606 100271487 RPL31P61 - RPL31_34_1652 HGNC:35635 19 19q13.12 ribosomal protein L31 pseudogene 61 pseudo RPL31P61 ribosomal protein L31 pseudogene 61 O - 20121230 -9606 100271488 RPL32P32 - RPL32_10_1563 HGNC:36024 17 17q23.2 ribosomal protein L32 pseudogene 32 pseudo RPL32P32 ribosomal protein L32 pseudogene 32 O - 20121230 -9606 100271489 RPL32P24 - RPL32_15_1162 HGNC:36722 11 11q13 ribosomal protein L32 pseudogene 24 pseudo RPL32P24 ribosomal protein L32 pseudogene 24 O - 20121230 -9606 100271490 RPL32P25 - RPL32_16_1167 HGNC:35721 11 11q21 ribosomal protein L32 pseudogene 25 pseudo RPL32P25 ribosomal protein L32 pseudogene 25 O - 20121230 -9606 100271491 RPL32P26 - RPL32_17_1245 HGNC:36027 12 12q14.1 ribosomal protein L32 pseudogene 26 pseudo RPL32P26 ribosomal protein L32 pseudogene 26 O - 20121230 -9606 100271492 RPL32P30 - RPL32_19_1431 HGNC:36729 15 15q21.2 ribosomal protein L32 pseudogene 30 pseudo RPL32P30 ribosomal protein L32 pseudogene 30 O - 20121230 -9606 100271493 RPL32P33 - RPL32_20_1573 HGNC:36231 17 17q24.3 ribosomal protein L32 pseudogene 33 pseudo RPL32P33 ribosomal protein L32 pseudogene 33 O - 20121230 -9606 100271494 RPL34P19 - RPL34_10_1028 HGNC:36925 10 10p11.22 ribosomal protein L34 pseudogene 19 pseudo RPL34P19 ribosomal protein L34 pseudogene 19 O - 20121230 -9606 100271495 RPL34P21 - RPL34_10_1189 HGNC:35677 11 11q24 ribosomal protein L34 pseudogene 21 pseudo RPL34P21 ribosomal protein L34 pseudogene 21 O - 20121230 -9606 100271498 RPL34P22 - RPL34_12_1141 HGNC:36454 11 11p11.2 ribosomal protein L34 pseudogene 22 pseudo RPL34P22 ribosomal protein L34 pseudogene 22 O - 20121230 -9606 100271499 RPL34P23 - RPL34_13_1184 HGNC:35820 11 11q24.1 ribosomal protein L34 pseudogene 23 pseudo RPL34P23 ribosomal protein L34 pseudogene 23 O - 20121230 -9606 100271500 RPL34P28 - RPL34_13_1367 HGNC:36781 14 14q22 ribosomal protein L34 pseudogene 28 pseudo RPL34P28 ribosomal protein L34 pseudogene 28 O - 20121230 -9606 100271501 RPL34P25 - RPL34_14_1217 HGNC:35895 12 12p12 ribosomal protein L34 pseudogene 25 pseudo RPL34P25 ribosomal protein L34 pseudogene 25 O - 20121230 -9606 100271502 RPL34P32 - RPL34_14_1586 HGNC:36902 18 18q11.2 ribosomal protein L34 pseudogene 32 pseudo RPL34P32 ribosomal protein L34 pseudogene 32 O - 20121230 -9606 100271503 RPL34P29 - RPL34_15_1483 HGNC:35631 16 16q12.1 ribosomal protein L34 pseudogene 29 pseudo RPL34P29 ribosomal protein L34 pseudogene 29 O - 20121230 -9606 100271504 RPL34P35 - RPL34_16_1738 HGNC:35798 22 22q11.21 ribosomal protein L34 pseudogene 35 pseudo RPL34P35 ribosomal protein L34 pseudogene 35 O - 20121230 -9606 100271505 RPL34P30 - RPL34_17_1547 HGNC:36477 17 17q21 ribosomal protein L34 pseudogene 30 pseudo RPL34P30 ribosomal protein L34 pseudogene 30 O - 20121230 -9606 100271506 RPL35AP21 - RPL35A_11_983 HGNC:36814 9 9q21.13 ribosomal protein L35a pseudogene 21 pseudo RPL35AP21 ribosomal protein L35a pseudogene 21 O - 20121230 -9606 100271507 RPL35AP22 - RPL35A_9_1011 HGNC:35932 9 9q33.1 ribosomal protein L35a pseudogene 22 pseudo RPL35AP22 ribosomal protein L35a pseudogene 22 O - 20121230 -9606 100271508 RPL36AP24 - RPL36A_10_733 HGNC:36252 6 6q21 ribosomal protein L36a pseudogene 24 pseudo RPL36AP24 ribosomal protein L36a pseudogene 24 O - 20121230 -9606 100271509 RPL36AP28 - RPL36A_10_864 HGNC:36702 7 7q36.1 ribosomal protein L36a pseudogene 28 pseudo RPL36AP28 ribosomal protein L36a pseudogene 28 O - 20121230 -9606 100271510 RPL36AP29 - RPL36A_11_788 HGNC:36897 7 7p21.1 ribosomal protein L36a pseudogene 29 pseudo RPL36AP29 ribosomal protein L36a pseudogene 29 O - 20121230 -9606 100271511 RPL36AP30 - RPL36A_11_867 HGNC:36216 7 7q36.3 ribosomal protein L36a pseudogene 30 pseudo RPL36AP30 ribosomal protein L36a pseudogene 30 O - 20121230 -9606 100271512 RPL36AP32 - RPL36A_12_887 HGNC:36540 8 8p21.1 ribosomal protein L36a pseudogene 32 pseudo RPL36AP32 ribosomal protein L36a pseudogene 32 O - 20121230 -9606 100271513 RPL36AP34 - RPL36A_14_970 HGNC:35882 9 9p21 ribosomal protein L36a pseudogene 34 pseudo RPL36AP34 ribosomal protein L36a pseudogene 34 O - 20121230 -9606 100271515 RPL37P19 - RPL37_10_1232 HGNC:35576 12 12q13.1 ribosomal protein L37 pseudogene 19 pseudo RPL37P19 ribosomal protein L37 pseudogene 19 O - 20121230 -9606 100271516 RPL37P21 - RPL37_11_1318 HGNC:36256 13 13q21.33 ribosomal protein L37 pseudogene 21 pseudo RPL37P21 ribosomal protein L37 pseudogene 21 O - 20121230 -9606 100271517 RPL39P25 - RPL39_11_1067 HGNC:37002 10 10q22.2 ribosomal protein L39 pseudogene 25 pseudo RPL39P25 ribosomal protein L39 pseudogene 25 O - 20121230 -9606 100271518 RPL39P26 - RPL39_12_1121 HGNC:35900 11 11p15.2 ribosomal protein L39 pseudogene 26 pseudo RPL39P26 ribosomal protein L39 pseudogene 26 O - 20121230 -9606 100271519 RPL39P30 - RPL39_12_1504 HGNC:36979 16 16q24.2 ribosomal protein L39 pseudogene 30 pseudo RPL39P30 ribosomal protein L39 pseudogene 30 O - 20121230 -9606 100271520 RPL39P28 - RPL39_14_1253 HGNC:35619 12 12q15 ribosomal protein L39 pseudogene 28 pseudo RPL39P28 ribosomal protein L39 pseudogene 28 O - 20121230 -9606 100271521 RPL39P33 - RPL39_14_1560 HGNC:36315 17 17q22 ribosomal protein L39 pseudogene 33 pseudo RPL39P33 ribosomal protein L39 pseudogene 33 O - 20121230 -9606 100271522 RPL39P29 - RPL39_15_1333 HGNC:35808 13 13q34 ribosomal protein L39 pseudogene 29 pseudo RPL39P29 ribosomal protein L39 pseudogene 29 O - 20121230 -9606 100271523 RPL39P34 - RPL39_15_1666 HGNC:36528 19 19q13.3 ribosomal protein L39 pseudogene 34 pseudo RPL39P34 ribosomal protein L39 pseudogene 34 O - 20121230 -9606 100271524 RPL39P35 - RPL39_16_1667 HGNC:35815 19 19q13.41 ribosomal protein L39 pseudogene 35 pseudo RPL39P35 ribosomal protein L39 pseudogene 35 O - 20121230 -9606 100271525 RPL39P31 - RPL39_17_1495 HGNC:36488 16 16q22 ribosomal protein L39 pseudogene 31 pseudo RPL39P31 ribosomal protein L39 pseudogene 31 O - 20121230 -9606 100271526 RPL39P36 - RPL39_17_1668 HGNC:36076 19 19q13.41 ribosomal protein L39 pseudogene 36 pseudo RPL39P36 ribosomal protein L39 pseudogene 36 O - 20121230 -9606 100271528 RPL39P37 - RPL39_18_1669 HGNC:36282 19 19q13.41 ribosomal protein L39 pseudogene 37 pseudo RPL39P37 ribosomal protein L39 pseudogene 37 O - 20121230 -9606 100271529 RPL39P38 - RPL39_19_1635 HGNC:36935 19 19p13.1 ribosomal protein L39 pseudogene 38 pseudo RPL39P38 ribosomal protein L39 pseudogene 38 O - 20121230 -9606 100271530 RPL39P39 - RPL39_19_1716 HGNC:36514 20 20q13.31 ribosomal protein L39 pseudogene 39 pseudo RPL39P39 ribosomal protein L39 pseudogene 39 O - 20121230 -9606 100271531 RPL39P40 - RPL39_21_1719 HGNC:35823 21 21q21.1 ribosomal protein L39 pseudogene 40 pseudo RPL39P40 ribosomal protein L39 pseudogene 40 O - 20121230 -9606 100271532 RPL39P41 - RPL39_22_1750 HGNC:35941 22 22q13.1 ribosomal protein L39 pseudogene 41 pseudo RPL39P41 ribosomal protein L39 pseudogene 41 O - 20121230 -9606 100271533 RPL7AP51 - RPL7A_17_1050 HGNC:36826 10 10q22.2 ribosomal protein L7a pseudogene 51 pseudo RPL7AP51 ribosomal protein L7a pseudogene 51 O - 20121230 -9606 100271534 RPL7AP52 - RPL7A_18_1082 HGNC:36233 10 10q24.1-q24.3 ribosomal protein L7a pseudogene 52 pseudo RPL7AP52 ribosomal protein L7a pseudogene 52 O - 20121230 -9606 100271535 RPL7AP55 - RPL7A_19_1118 HGNC:36314 11 11p15.4 ribosomal protein L7a pseudogene 55 pseudo RPL7AP55 ribosomal protein L7a pseudogene 55 O - 20121230 -9606 100271536 RPL7AP56 - RPL7A_21_1137 HGNC:35585 11 11p12 ribosomal protein L7a pseudogene 56 pseudo RPL7AP56 ribosomal protein L7a pseudogene 56 O - 20121230 -9606 100271537 RPL7AP57 - RPL7A_23_1164 HGNC:36551 11 11q14.3 ribosomal protein L7a pseudogene 57 pseudo RPL7AP57 ribosomal protein L7a pseudogene 57 O - 20121230 -9606 100271538 RPL7AP60 - RPL7A_25_1279 HGNC:35859 12 12q24.13 ribosomal protein L7a pseudogene 60 pseudo RPL7AP60 ribosomal protein L7a pseudogene 60 O - 20121230 -9606 100271539 RPL7AP61 - RPL7A_25_1330 HGNC:35482 13 13q32.2 ribosomal protein L7a pseudogene 61 pseudo RPL7AP61 ribosomal protein L7a pseudogene 61 O - 20121230 -9606 100271542 RPL7AP67 - RPL7A_29_1595 HGNC:35537 18 18q12 ribosomal protein L7a pseudogene 67 pseudo RPL7AP67 ribosomal protein L7a pseudogene 67 O - 20121230 -9606 100271543 RPL7AP65 - RPL7A_30_1522 HGNC:37031 17 17p11.2 ribosomal protein L7a pseudogene 65 pseudo RPL7AP65 ribosomal protein L7a pseudogene 65 O - 20121230 -9606 100271545 RPL7AP69 - RPL7A_31_1673 HGNC:36697 19 19q13.43 ribosomal protein L7a pseudogene 69 pseudo RPL7AP69 ribosomal protein L7a pseudogene 69 O - 20121230 -9606 100271546 RPS10P25 - RPS10_10_1555 HGNC:36532 17 17q21 ribosomal protein S10 pseudogene 25 pseudo RPS10P25 ribosomal protein S10 pseudogene 25 O - 20121230 -9606 100271547 RPS10P20 - RPS10_11_1233 HGNC:35829 12 12q13 ribosomal protein S10 pseudogene 20 pseudo RPS10P20 ribosomal protein S10 pseudogene 20 O - 20121230 -9606 100271548 RPS10P26 - RPS10_11_1569 HGNC:36321 17 17q23 ribosomal protein S10 pseudogene 26 pseudo RPS10P26 ribosomal protein S10 pseudogene 26 O - 20121230 -9606 100271549 RPS12P20 - RPS12_10_1153 HGNC:36187 11 11q13 ribosomal protein S12 pseudogene 20 pseudo RPS12P20 ribosomal protein S12 pseudogene 20 O - 20121230 -9606 100271550 RPS12P21 - RPS12_11_1175 HGNC:36464 11 11q22 ribosomal protein S12 pseudogene 21 pseudo RPS12P21 ribosomal protein S12 pseudogene 21 O - 20121230 -9606 100271551 RPS12P24 - RPS12_12_1308 HGNC:35561 13 13q13.3 ribosomal protein S12 pseudogene 24 pseudo RPS12P24 ribosomal protein S12 pseudogene 24 O - 20121230 -9606 100271552 RPS12P27 - RPS12_13_1490 HGNC:35892 16 16q22.1 ribosomal protein S12 pseudogene 27 pseudo RPS12P27 ribosomal protein S12 pseudogene 27 O - 20121230 -9606 100271553 RPS12P28 - RPS12_14_1532 HGNC:36972 17 17p13.2 ribosomal protein S12 pseudogene 28 pseudo RPS12P28 ribosomal protein S12 pseudogene 28 O - 20121230 -9606 100271555 RPS12P30 - RPS12_15_1561 HGNC:36813 17 17q22 ribosomal protein S12 pseudogene 30 pseudo RPS12P30 ribosomal protein S12 pseudogene 30 O - 20121230 -9606 100271556 RPS12P32 - RPS12_16_1623 HGNC:35571 19 19p13.2 ribosomal protein S12 pseudogene 32 pseudo RPS12P32 ribosomal protein S12 pseudogene 32 O - 20121230 -9606 100271557 RPS15AP22 - RPS15A_11_848 HGNC:36305 7 7q32.3 ribosomal protein S15a pseudogene 22 pseudo RPS15AP22 ribosomal protein S15a pseudogene 22 O - 20121230 -9606 100271558 RPS15AP23 - RPS15A_12_849 HGNC:36718 7 7q31 ribosomal protein S15a pseudogene 23 pseudo RPS15AP23 ribosomal protein S15a pseudogene 23 O - 20121230 -9606 100271560 RPS20P28 - RPS20_13_1202 HGNC:36452 12 12p13 ribosomal protein S20 pseudogene 28 pseudo RPS20P28 ribosomal protein S20 pseudogene 28 O - 20121230 -9606 100271561 RPS20P29 - RPS20_14_1201 HGNC:36237 12 12p13.31 ribosomal protein S20 pseudogene 29 pseudo RPS20P29 ribosomal protein S20 pseudogene 29 O - 20121230 -9606 100271562 RPS20P30 - RPS20_14_1295 HGNC:36626 12 12q24.33 ribosomal protein S20 pseudogene 30 pseudo RPS20P30 ribosomal protein S20 pseudogene 30 O - 20121230 -9606 100271563 RPS20P31 - RPS20_15_1287 HGNC:35767 12 12q24.2 ribosomal protein S20 pseudogene 31 pseudo RPS20P31 ribosomal protein S20 pseudogene 31 O - 20121230 -9606 100271564 RPS20P33 - RPS20_16_1416 HGNC:36725 14 14q32.3 ribosomal protein S20 pseudogene 33 pseudo RPS20P33 ribosomal protein S20 pseudogene 33 O - 20121230 -9606 100271565 RPS20P34 - RPS20_17_1430 HGNC:36668 15 15q21.1 ribosomal protein S20 pseudogene 34 pseudo RPS20P34 ribosomal protein S20 pseudogene 34 O - 20121230 -9606 100271566 RPS20P35 - RPS20_18_1544 HGNC:36929 17 17q ribosomal protein S20 pseudogene 35 pseudo RPS20P35 ribosomal protein S20 pseudogene 35 O - 20121230 -9606 100271567 RPS26P41 - RPS26_13_1064 HGNC:36062 10 10q22.2 ribosomal protein S26 pseudogene 41 pseudo RPS26P41 ribosomal protein S26 pseudogene 41 O - 20121230 -9606 100271568 RPS26P42 - RPS26_14_1066 HGNC:36243 10 10q22 ribosomal protein S26 pseudogene 42 pseudo RPS26P42 ribosomal protein S26 pseudogene 42 O - 20121230 -9606 100271569 RPS26P44 - RPS26_16_1195 HGNC:36927 12 12p13.3 ribosomal protein S26 pseudogene 44 pseudo RPS26P44 ribosomal protein S26 pseudogene 44 O - 20121230 -9606 100271570 RPS26P45 - RPS26_17_1256 HGNC:36944 12 12q15 ribosomal protein S26 pseudogene 45 pseudo RPS26P45 ribosomal protein S26 pseudogene 45 O - 20121230 -9606 100271571 RPS26P43 - RPS26_22_1185 HGNC:36675 11 11q24.1 ribosomal protein S26 pseudogene 43 pseudo RPS26P43 ribosomal protein S26 pseudogene 43 O - 20121230 -9606 100271572 RPS26P46 - RPS26_23_1212 HGNC:35807 12 12p13.1 ribosomal protein S26 pseudogene 46 pseudo RPS26P46 ribosomal protein S26 pseudogene 46 O - 20121230 -9606 100271574 RPS26P48 - RPS26_26_1396 HGNC:35519 14 14q31 ribosomal protein S26 pseudogene 48 pseudo RPS26P48 ribosomal protein S26 pseudogene 48 O - 20121230 -9606 100271575 RPS26P49 - RPS26_27_1414 HGNC:35514 14 14q32.33 ribosomal protein S26 pseudogene 49 pseudo RPS26P49 ribosomal protein S26 pseudogene 49 O - 20121230 -9606 100271576 RPS26P51 - RPS26_28_1470 HGNC:36254 16 16p13.3 ribosomal protein S26 pseudogene 51 pseudo RPS26P51 ribosomal protein S26 pseudogene 51 O - 20121230 -9606 100271577 RPS26P52 - RPS26_29_1475 HGNC:36863 16 16p13.3 ribosomal protein S26 pseudogene 52 pseudo RPS26P52 ribosomal protein S26 pseudogene 52 O - 20121230 -9606 100271581 RPS27P20 - RPS27_11_1188 HGNC:36333 11 11q24.3 ribosomal protein S27 pseudogene 20 pseudo RPS27P20 ribosomal protein S27 pseudogene 20 O - 20121230 -9606 100271583 RPS27P26 - RPS27_12_1494 HGNC:36904 16 16q22 ribosomal protein S27 pseudogene 26 pseudo RPS27P26 ribosomal protein S27 pseudogene 26 O - 20121230 -9606 100271584 RPS27P25 - RPS27_14_1288 HGNC:36020 12 12q ribosomal protein S27 pseudogene 25 pseudo RPS27P25 ribosomal protein S27 pseudogene 25 O - 20121230 -9606 100271585 RPS27P27 - RPS27_15_1487 HGNC:36043 16 16q21 ribosomal protein S27 pseudogene 27 pseudo RPS27P27 ribosomal protein S27 pseudogene 27 O - 20121230 -9606 100271586 RPS27P28 - RPS27_16_1593 HGNC:36748 18 18q12.1 ribosomal protein S27 pseudogene 28 pseudo RPS27P28 ribosomal protein S27 pseudogene 28 O - 20121230 -9606 100271587 RPS29P20 - RPS29_15_1116 HGNC:36491 11 11p15.4 ribosomal protein S29 pseudogene 20 pseudo RPS29P20 ribosomal protein S29 pseudogene 20 O - 20121230 -9606 100271588 RPS29P23 - RPS29_17_1627 HGNC:35779 19 19p13.2 ribosomal protein S29 pseudogene 23 pseudo RPS29P23 ribosomal protein S29 pseudogene 23 O - 20121230 -9606 100271589 RPS29P24 - RPS29_18_1653 HGNC:35794 19 19q13 ribosomal protein S29 pseudogene 24 pseudo RPS29P24 ribosomal protein S29 pseudogene 24 O - 20121230 -9606 100271590 RPS29P25 - RPS29_19_1654 HGNC:35649 19 19q13 ribosomal protein S29 pseudogene 25 pseudo RPS29P25 ribosomal protein S29 pseudogene 25 O - 20121230 -9606 100271591 RPS29P26 - RPS29_20_1655 HGNC:36490 19 19q13.1 ribosomal protein S29 pseudogene 26 pseudo RPS29P26 ribosomal protein S29 pseudogene 26 O - 20121230 -9606 100271592 RPS29P27 - RPS29_21_1656 HGNC:35836 19 19q13.1 ribosomal protein S29 pseudogene 27 pseudo RPS29P27 ribosomal protein S29 pseudogene 27 O - 20121230 -9606 100271593 RPS3AP37 - RPS3A_14_1056 HGNC:36691 10 10q21 ribosomal protein S3a pseudogene 37 pseudo RPS3AP37 ribosomal protein S3a pseudogene 37 O - 20121230 -9606 100271594 RPS3AP38 - RPS3A_17_1053 HGNC:36145 10 10q21.3 ribosomal protein S3a pseudogene 38 pseudo RPS3AP38 ribosomal protein S3a pseudogene 38 O - 20121230 -9606 100271595 RPS3AP41 - RPS3A_17_1152 HGNC:37000 11 11q13.4 ribosomal protein S3a pseudogene 41 pseudo RPS3AP41 ribosomal protein S3a pseudogene 41 O - 20121230 -9606 100271596 RPS3AP46 - RPS3A_19_1365 HGNC:36338 14 14q22.1 ribosomal protein S3a pseudogene 46 pseudo RPS3AP46 ribosomal protein S3a pseudogene 46 O - 20121230 -9606 100271597 RPS3AP42 - RPS3A_20_1165 HGNC:35605 11 11q14.3 ribosomal protein S3a pseudogene 42 pseudo RPS3AP42 ribosomal protein S3a pseudogene 42 O - 20121230 -9606 100271600 RPS3AP51 - RPS3A_23_1744 HGNC:35480 22 22q12.2 ribosomal protein S3a pseudogene 51 pseudo RPS3AP51 ribosomal protein S3a pseudogene 51 O - 20121230 -9606 100271601 RPS3AP50 - RPS3A_24_1646 HGNC:37018 19 19q13.1 ribosomal protein S3a pseudogene 50 pseudo RPS3AP50 ribosomal protein S3a pseudogene 50 O - 20121230 -9606 100271602 RPL10AP13 - RPL10A_8_1594 HGNC:36155 18 18q12 ribosomal protein L10a pseudogene 13 pseudo RPL10AP13 ribosomal protein L10a pseudogene 13 O - 20121230 -9606 100271603 RPL13AP24 - RPL13A_8_1193 HGNC:36209 12 12p13.3-p13.2 ribosomal protein L13a pseudogene 24 pseudo RPL13AP24 ribosomal protein L13a pseudogene 24 O - 20121230 -9606 100271604 RPL18AP12 - RPL18A_7_1543 HGNC:36991 17 17q21 ribosomal protein L18a pseudogene 12 pseudo RPL18AP12 ribosomal protein L18a pseudogene 12 O - 20121230 -9606 100271605 RPL27AP8 - RPL27A_5_1310 HGNC:36544 13 13q14.2 ribosomal protein L27a pseudogene 8 pseudo RPL27AP8 ribosomal protein L27a pseudogene 8 O - 20121230 -9606 100271606 RPL37AP9 - RPL37A_4_1209 HGNC:36835 12 12p13.1 ribosomal protein L37a pseudogene 9 pseudo RPL37AP9 ribosomal protein L37a pseudogene 9 O - 20121230 -9606 100271607 RPS15AP30 - RPS15A_8_1098 HGNC:35495 10 10q25.2 ribosomal protein S15a pseudogene 30 pseudo RPS15AP30 ribosomal protein S15a pseudogene 30 O - 20121230 -9606 100271610 RPL36AP35 - RPL36A_16_1006 HGNC:35639 9 9q31.3 ribosomal protein L36a pseudogene 35 pseudo RPL36AP35 ribosomal protein L36a pseudogene 35 O - 20121230 -9606 100271611 RPL36AP53 - RPL36A_27_1803 HGNC:36517 X Xq24 ribosomal protein L36a pseudogene 53 pseudo RPL36AP53 ribosomal protein L36a pseudogene 53 O - 20121230 -9606 100271612 RPL36AP54 - RPL36A_28_1814 HGNC:35831 X Xq26 ribosomal protein L36a pseudogene 54 pseudo RPL36AP54 ribosomal protein L36a pseudogene 54 O - 20121230 -9606 100271613 RPS15AP27 - RPS15A_15_1003 HGNC:37011 9 9q31.2 ribosomal protein S15a pseudogene 27 pseudo RPS15AP27 ribosomal protein S15a pseudogene 27 O - 20121230 -9606 100271616 RPL23AP58 - RPL23A_23_1090 HGNC:36138 10 10q24.32 ribosomal protein L23a pseudogene 58 pseudo RPL23AP58 ribosomal protein L23a pseudogene 58 O - 20121230 -9606 100271617 RPL23AP62 - RPL23A_24_1177 HGNC:36276 11 11q23.1 ribosomal protein L23a pseudogene 62 pseudo RPL23AP62 ribosomal protein L23a pseudogene 62 O - 20121230 -9606 100271618 RPL23AP59 - RPL23A_25_1093 HGNC:36920 10 10q23-q25 ribosomal protein L23a pseudogene 59 pseudo RPL23AP59 ribosomal protein L23a pseudogene 59 O - 20121230 -9606 100271619 RPL23AP70 - RPL23A_27_1353 HGNC:36030 14 14q13.2 ribosomal protein L23a pseudogene 70 pseudo RPL23AP70 ribosomal protein L23a pseudogene 70 O - 20121230 -9606 100271620 RPL23AP66 - RPL23A_30_1207 HGNC:35940 12 12p12 ribosomal protein L23a pseudogene 66 pseudo RPL23AP66 ribosomal protein L23a pseudogene 66 O - 20121230 -9606 100271621 RPL23AP72 - RPL23A_30_1480 HGNC:35736 16 16q11 ribosomal protein L23a pseudogene 72 pseudo RPL23AP72 ribosomal protein L23a pseudogene 72 O - 20121230 -9606 100271622 RPL23AP67 - RPL23A_31_1299 HGNC:36658 12 12q24.33 ribosomal protein L23a pseudogene 67 pseudo RPL23AP67 ribosomal protein L23a pseudogene 67 O - 20121230 -9606 100271623 RPL23AP69 - RPL23A_32_1304 HGNC:36625 13 13q12.13 ribosomal protein L23a pseudogene 69 pseudo RPL23AP69 ribosomal protein L23a pseudogene 69 O - 20121230 -9606 100271624 RPL23AP78 - RPL23A_34_1620 HGNC:35518 19 19p13.2 ribosomal protein L23a pseudogene 78 pseudo RPL23AP78 ribosomal protein L23a pseudogene 78 O - 20121230 -9606 100271625 RPL23AP73 - RPL23A_36_1508 HGNC:36443 17 17p13.2 ribosomal protein L23a pseudogene 73 pseudo RPL23AP73 ribosomal protein L23a pseudogene 73 O - 20121230 -9606 100271626 RPL23AP79 - RPL23A_39_1676 HGNC:36226 19 19q13.4 ribosomal protein L23a pseudogene 79 pseudo RPL23AP79 ribosomal protein L23a pseudogene 79 O - 20121230 -9606 100271627 RPL23AP81 - RPL23A_40_1702 HGNC:36246 20 20q12 ribosomal protein L23a pseudogene 81 pseudo RPL23AP81 ribosomal protein L23a pseudogene 81 O - 20121230 -9606 100271629 RPL35AP23 - RPL35A_10_1045 HGNC:36045 10 10q11.2 ribosomal protein L35a pseudogene 23 pseudo RPL35AP23 ribosomal protein L35a pseudogene 23 O - 20121230 -9606 100271630 RPL35AP26 - RPL35A_11_1187 HGNC:36465 11 11q24.2 ribosomal protein L35a pseudogene 26 pseudo RPL35AP26 ribosomal protein L35a pseudogene 26 O - 20121230 -9606 100271631 RPL35AP24 - RPL35A_12_1042 HGNC:35544 10 10q11.23 ribosomal protein L35a pseudogene 24 pseudo RPL35AP24 ribosomal protein L35a pseudogene 24 O - 20121209 -9606 100271632 RPL35AP32 - RPL35A_12_1446 HGNC:36269 15 15q22 ribosomal protein L35a pseudogene 32 pseudo RPL35AP32 ribosomal protein L35a pseudogene 32 O - 20121230 -9606 100271633 RPL35AP25 - RPL35A_13_1043 HGNC:36294 10 10q11.23 ribosomal protein L35a pseudogene 25 pseudo RPL35AP25 ribosomal protein L35a pseudogene 25 O - 20121209 -9606 100271634 RPL35AP33 - RPL35A_13_1491 HGNC:36950 16 16q22.1 ribosomal protein L35a pseudogene 33 pseudo RPL35AP33 ribosomal protein L35a pseudogene 33 O - 20121230 -9606 100271635 RPL35AP27 - RPL35A_14_1227 HGNC:35979 12 12p11 ribosomal protein L35a pseudogene 27 pseudo RPL35AP27 ribosomal protein L35a pseudogene 27 O - 20121230 -9606 100271636 RPL35AP35 - RPL35A_14_1534 HGNC:36677 17 17q11.2 ribosomal protein L35a pseudogene 35 pseudo RPL35AP35 ribosomal protein L35a pseudogene 35 O - 20121230 -9606 100271637 RPL35AP28 - RPL35A_15_1235 HGNC:36480 12 12q13 ribosomal protein L35a pseudogene 28 pseudo RPL35AP28 ribosomal protein L35a pseudogene 28 O - 20121230 -9606 100271638 RPL35AP29 - RPL35A_16_1237 HGNC:35569 12 12q13 ribosomal protein L35a pseudogene 29 pseudo RPL35AP29 ribosomal protein L35a pseudogene 29 O - 20121230 -9606 100271639 RPL35AP30 - RPL35A_17_1286 HGNC:36751 12 12q24.23 ribosomal protein L35a pseudogene 30 pseudo RPL35AP30 ribosomal protein L35a pseudogene 30 O - 20121230 -9606 100271640 RPL35AP31 - RPL35A_18_1321 HGNC:36284 13 13q22 ribosomal protein L35a pseudogene 31 pseudo RPL35AP31 ribosomal protein L35a pseudogene 31 O - 20121230 -9606 100271641 RPL35AP34 - RPL35A_19_1474 HGNC:36324 16 16p13.12 ribosomal protein L35a pseudogene 34 pseudo RPL35AP34 ribosomal protein L35a pseudogene 34 O - 20121230 -9606 100271642 RPL36AP38 - RPL36A_16_1155 HGNC:35594 11 11q14 ribosomal protein L36a pseudogene 38 pseudo RPL36AP38 ribosomal protein L36a pseudogene 38 O - 20121230 -9606 100271643 RPL36AP39 - RPL36A_17_1112 HGNC:36074 11 11p15.5 ribosomal protein L36a pseudogene 39 pseudo RPL36AP39 ribosomal protein L36a pseudogene 39 O - 20121230 -9606 100271644 RPL36AP41 - RPL36A_17_1248 HGNC:35813 12 12q14.2 ribosomal protein L36a pseudogene 41 pseudo RPL36AP41 ribosomal protein L36a pseudogene 41 O - 20121230 -9606 100271645 RPL36AP42 - RPL36A_18_1363 HGNC:36277 14 14q ribosomal protein L36a pseudogene 42 pseudo RPL36AP42 ribosomal protein L36a pseudogene 42 O - 20121230 -9606 100271646 RPL36AP43 - RPL36A_21_1460 HGNC:36791 15 15q26 ribosomal protein L36a pseudogene 43 pseudo RPL36AP43 ribosomal protein L36a pseudogene 43 O - 20121230 -9606 100271647 RPL36AP47 - RPL36A_22_1567 HGNC:35624 17 17q23.2 ribosomal protein L36a pseudogene 47 pseudo RPL36AP47 ribosomal protein L36a pseudogene 47 O - 20121230 -9606 100271648 RPL36AP50 - RPL36A_26_1671 HGNC:36372 19 19q13.4 ribosomal protein L36a pseudogene 50 pseudo RPL36AP50 ribosomal protein L36a pseudogene 50 O - 20121230 -9606 100271649 RPS15AP32 - RPS15A_10_1280 HGNC:35879 12 12q24.13 ribosomal protein S15a pseudogene 32 pseudo RPS15AP32 ribosomal protein S15a pseudogene 32 O - 20121230 -9606 100271650 RPS15AP36 - RPS15A_12_1675 HGNC:36803 19 19qter ribosomal protein S15a pseudogene 36 pseudo RPS15AP36 ribosomal protein S15a pseudogene 36 O - 20121230 -9606 100271651 RPS15AP37 - RPS15A_13_1746 HGNC:36173 22 22q12.2 ribosomal protein S15a pseudogene 37 pseudo RPS15AP37 ribosomal protein S15a pseudogene 37 O - 20121230 -9606 100271652 RPS15AP31 - RPS15A_18_1130 HGNC:36960 11 11p14.1 ribosomal protein S15a pseudogene 31 pseudo RPS15AP31 ribosomal protein S15a pseudogene 31 O - 20121230 -9606 100271654 RPS15AP33 - RPS15A_21_1479 HGNC:36178 16 16p11 ribosomal protein S15a pseudogene 33 pseudo RPS15AP33 ribosomal protein S15a pseudogene 33 O - 20121230 -9606 100271655 RPS15AP38 - RPS15A_25_1749 HGNC:36523 22 22q12.3 ribosomal protein S15a pseudogene 38 pseudo RPS15AP38 ribosomal protein S15a pseudogene 38 O - 20121230 -9606 100271656 LOC100271656 - - - 1 1p13.3 N-acetylneuraminic acid phosphatase pseudogene pseudo - - - - 20121230 -9606 100271686 DELXP11.3 - CXDELp11.3 MIM:300578 X Xp11.3 Chromosome Xp11.3 deletion syndrome unknown - - - - 20120622 -9606 100271687 LNCR3 - - MIM:612571 5 5p15.33 Lung cancer susceptibility 3 unknown - - - - 20120622 -9606 100271688 ANIB9 - - MIM:612586 2 2q33.1 Aneurysm, intracranial berry, 9 unknown - - - - 20120622 -9606 100271689 ANIB10 - - MIM:612587 8 8q12.1 Aneurysm, intracranial berry, 10 unknown - - - - 20120622 -9606 100271690 CRCS8 - - MIM:612589 14 14q22.2 Colorectal cancer, susceptibility to, 8 unknown - - - - 20120622 -9606 100271691 CRCS10 - - MIM:612591 19 19q13.1 Colorectal cancer, susceptibility to, 10 unknown - - - - 20120622 -9606 100271692 CRCS11 - - MIM:612592 20 20p12.3 Colorectal cancer, susceptibility to, 11 unknown - - - - 20120622 -9606 100271693 LNCR4 - - MIM:612593 6 6p21.33 Lung cancer susceptibility 4 unknown - - - - 20120622 -9606 100271694 MS2 - - MIM:612594 10 10p15.1 Multiple sclerosis, susceptibility to, 2 unknown - - - - 20120622 -9606 100271695 MS3 - - MIM:612595 5 5p13.2 Multiple sclerosis, susceptibility to, 3 unknown - - - - 20120622 -9606 100271696 MS4 - - MIM:612596 1 1p36 Multiple sclerosis, susceptiblity to, 4 unknown - - - - 20120622 -9606 100271697 IDDM23 - - MIM:612622 4 4q27 Diabetes mellitus, insulin-dependent, 23 unknown - - - - 20120622 -9606 100271698 ADIPQTL4 - - MIM:612629 11 11q23-q24 Adiponectin, serum level of, QTL4 unknown - - - - 20120622 -9606 100271700 NONOP2 - - HGNC:42032 2 2p16 non-POU domain containing, octamer-binding pseudogene 2 pseudo NONOP2 non-POU domain containing, octamer-binding pseudogene 2 O - 20121230 -9606 100271702 LOC100271702 - - - 12 - uncharacterized LOC100271702 miscRNA - - - - 20121230 -9606 100271703 HAUS1P3 - - HGNC:43762 8 8q13.3 HAUS augmin-like complex, subunit 1 pseudogene 3 pseudo HAUS1P3 HAUS augmin-like complex, subunit 1 pseudogene 3 O - 20121230 -9606 100271715 ARHGEF33 - - HGNC:37252|Ensembl:ENSG00000214694|Vega:OTTHUMG00000153540 2 2p22.1 Rho guanine nucleotide exchange factor (GEF) 33 protein-coding ARHGEF33 Rho guanine nucleotide exchange factor (GEF) 33 O DH and coiled-coil domain-containing protein ENSP00000381780|rho guanine nucleotide exchange factor 33 20121230 -9606 100271717 LOC100271717 - - - 1 1q25.3 natural cytotoxicity triggering receptor 1 pseudogene pseudo - - - - 20121230 -9606 100271718 AD16 - - MIM:300756 X Xq21.3 Alzheimer disease 16 unknown - - - - 20120622 -9606 100271719 PSORS11 - - MIM:612599 5 5q31.1-q33.1 Psoriasis susceptibility 11 unknown - - - - 20120622 -9606 100271722 LOC100271722 hCG_2039027 - - 22 22q13.31 uncharacterized LOC100271722 miscRNA - - - - 20121230 -9606 100271832 LOC100271832 - - - 2 2p22.3 uncharacterized LOC100271832 miscRNA - - - - 20121230 -9606 100271835 LIMS3-LOC440895 - - - 2 2q13 LIMS3-LOC440895 readthrough miscRNA - - - - 20121230 -9606 100271836 LOC100271836 - - - 16 16p12.2 smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100271837 USH1H - - HGNC:22433|MIM:612632 15 15q22-q23 Usher syndrome 1H (autosomal recessive) unknown USH1H Usher syndrome 1H (autosomal recessive) O - 20120622 -9606 100271838 IBD26 - - MIM:612639 12 12q15 Inflammatory bowel disease-26 unknown - - - - 20120622 -9606 100271840 LOC100271840 - - - 13 - uncharacterized LOC100271840 unknown - - - - 20121222 -9606 100271842 LOC100271842 - - - 1 1q42 phosphatidylinositol 4-kinase type 2 beta pseudogene pseudo - - - - 20121230 -9606 100271846 ERVV-2 - ENVV2|HERV-V2 HGNC:39051 19 - endogenous retrovirus group V, member 2 protein-coding ERVV-2 endogenous retrovirus group V, member 2 O HERV-V_19q13.41 provirus ancestral Env polyprotein 2|endogenous retrovirus HSV2|envelope glycoprotein ENVV2 20121230 -9606 100271849 MEF2B hCG_38559 RSRFR2 HGNC:6995|MIM:600661|Ensembl:ENSG00000213999|Vega:OTTHUMG00000161595 19 19p13.11 myocyte enhancer factor 2B protein-coding MEF2B myocyte enhancer factor 2B O MADS box transcription enhancer factor 2, polypeptide B (myocyte enhancer factor 2B)|myocyte-specific enhancer factor 2B|serum response factor-like protein 2 20121230 -9606 100271867 MPVQTL1 - - MIM:612573 12 12q24.31 Mean platelet volume QTL1 unknown - - - - 20120622 -9606 100271868 MPVQTL2 - - MIM:612574 3 3p21-p13 Mean platelet volume QTL2 unknown - - - - 20120622 -9606 100271869 MPVQTL3 - - MIM:612575 17 17q11.2 Mean platelet volume QTL3 unknown - - - - 20120622 -9606 100271870 RBM22P4 - - HGNC:39697 6 6p21 RNA binding motif protein 22 pseudogene 4 pseudo RBM22P4 RNA binding motif protein 22 pseudogene 4 O - 20121230 -9606 100271871 RBM22P2 - - HGNC:39695 13 13q12 RNA binding motif protein 22 pseudogene 2 pseudo RBM22P2 RNA binding motif protein 22 pseudogene 2 O - 20121230 -9606 100271873 AIRN - AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088 HGNC:34515|MIM:604893 6 6q26 antisense of IGF2R non-protein coding RNA miscRNA AIRN antisense of IGF2R non-protein coding RNA O - 20121230 -9606 100271874 ZNRF2P2 - - HGNC:42793 7 - zinc and ring finger 2 pseudogene 2 pseudo ZNRF2P2 zinc and ring finger 2 pseudogene 2 O - 20121230 -9606 100271884 SMARCE1P1 - - HGNC:39731 11 11q22.3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1 pseudo SMARCE1P1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1 O - 20121230 -9606 100271893 LOC100271893 - - - 9 - sorting and assembly machinery component 50 homolog pseudogene pseudo - - - - 20121230 -9606 100271907 LOC100271907 - - - 5 5q33.2 myotubularin related protein 7 pseudogene pseudo - - - - 20121230 -9606 100271918 LOC100271918 - - - X Xp11 antigen identified by monoclonal antibody Ki-67 pseudogene pseudo - - - - 20121230 -9606 100271921 DEL15Q26QTER - C15DELq26qter MIM:612626 15 15q26-qter Chromosome 15q26-qter deletion syndrome unknown - - - - 20120622 -9606 100271922 BFIC4 - BFIS4 MIM:612627 1 1p36.12-p35.1 Convulsions, benign familial infantile, 4 unknown - - - - 20120622 -9606 100271923 FEB10 - - MIM:612637 3 3q26.2-q26.33 Febrile convulsions, familial, 10 unknown - - - - 20120622 -9606 100271924 DFNA59 - - HGNC:35168|MIM:612642 11 11p14.2-q12.3 deafness, autosomal dominant 59 unknown DFNA59 deafness, autosomal dominant 59 O - 20120622 -9606 100271927 RASA4B - - HGNC:35202|Ensembl:ENSG00000170667|Vega:OTTHUMG00000022944 7 7q22.1 RAS p21 protein activator 4B protein-coding RASA4B RAS p21 protein activator 4B O putative Ras GTPase-activating protein 4B 20121209 -9606 100272146 NFE2L3P2 - - HGNC:44191 17 17q21.32 nuclear factor (erythroid-derived 2)-like 3 pseudogene 2 pseudo NFE2L3P2 nuclear factor (erythroid-derived 2)-like 3 pseudogene 2 O - 20121230 -9606 100272147 CMC4 GS1-273L24.5 C6.1B|MTCP1|MTCP1B|MTCP1NB|p8|p8MTCP1 HGNC:35428|Ensembl:ENSG00000182712|Vega:OTTHUMG00000158504 X Xq28 C-x(9)-C motif containing 4 homolog (S. cerevisiae) protein-coding CMC4 C-x(9)-C motif containing 4 homolog (S. cerevisiae) O MTCP-1 type A|mature T-cell proliferation 1|mature T-cell proliferation 1 neighbor protein|mature T-cell proliferation-1 type A|protein p8 MTCP-1 20121230 -9606 100272169 L1RE4 - - HGNC:37056 6 6p21 LINE1 retrotransposable element 4 unknown L1RE4 LINE1 retrotransposable element 4 O - 20120318 -9606 100272205 TATDN2P2 - - HGNC:39255 6 6q25 TatD DNase domain containing 2 pseudogene 2 pseudo TATDN2P2 TatD DNase domain containing 2 pseudogene 2 O - 20121230 -9606 100272216 LOC100272216 - - - 5 - uncharacterized LOC100272216 miscRNA - - - - 20121230 -9606 100272217 LOC100272217 - - - 9 - uncharacterized LOC100272217 miscRNA - - - - 20121230 -9606 100272220 LOC100272220 - - - 10 10q23 RNA polymerase II associated protein 2 pseudogene pseudo - - - - 20121230 -9606 100272224 UAQTL3 - GOUT3 MIM:612670 - - Uric acid concentration, serum, QTL3 unknown - - - - 20120622 -9606 100272225 UAQTL4 - GOUT4 MIM:612671 6 6p21 Uric acid concentration, serum, QTL4 unknown - - - - 20120622 -9606 100272228 LOC100272228 - - - X - uncharacterized LOC100272228 miscRNA - - - - 20121230 -9606 100286746 LOC100286746 - - - 8 - GABA(A) receptor-associated protein-like 2 pseudogene pseudo - - - - 20121230 -9606 100286793 LOC100286793 - - - 1 - uncharacterized LOC100286793 miscRNA - - - - 20121209 -9606 100286836 OS6 - - MIM:612401 3 3p24.3 Osteoarthritis susceptibility 6 unknown - - - - 20120622 -9606 100286844 BCDIN3D-AS1 - - HGNC:44113 12 12q13.13 BCDIN3D antisense RNA 1 miscRNA BCDIN3D-AS1 BCDIN3D antisense RNA 1 O - 20121230 -9606 100286881 LOC100286881 - - - 1 1q32.1 signal peptidase complex subunit 1-like pseudo - - - - 20121102 -9606 100286895 LOC100286895 - - - 22 - cell division cycle 27 homolog pseudogene pseudo - - - - 20121209 -9606 100286906 LOC100286906 - - - 7 7q36.3 uncharacterized LOC100286906 protein-coding - - - - 20120511 -9606 100286908 LOC100286908 - - - 15 15q13.3 uncharacterized LOC100286908 pseudo - - - - 20121209 -9606 100286914 LOC100286914 - - Ensembl:ENSG00000250765|Vega:OTTHUMG00000162985 5 5q35.3 putative uncharacterized protein C20orf69-like protein-coding - - - - 20121209 -9606 100286918 NDUFS5P2 - - HGNC:44040 1 1p21.3 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 2 pseudo NDUFS5P2 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 2 O - 20121230 -9606 100286922 LOC100286922 - - - 2 2q37.1 DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene pseudo - - - - 20121230 -9606 100286925 LOC100286925 - - - 22 22q11.22 uncharacterized LOC100286925 unknown - - - - 20121230 -9606 100286929 NMD3P2 - - HGNC:37820 7 7p11.2 NMD3 homolog (S. cerevisiae) pseudogene 2 pseudo NMD3P2 NMD3 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100286931 LOC100286931 - - - 9 9q22.32 proline-rich nuclear receptor coactivator 2-like pseudo - - - - 20121209 -9606 100286938 VPS13A-AS1 RP11-470P4.2 - HGNC:44167 9 9q21.2 VPS13A antisense RNA 1 miscRNA VPS13A-AS1 VPS13A antisense RNA 1 O - 20121230 -9606 100286942 LOC100286942 - - - 15 15q23 ribosomal protein S15a pseudogene pseudo - - - - 20121230 -9606 100286945 LOC100286945 - - - 4 4p16.3 X antigen family, member 3 pseudogene pseudo - - - - 20121230 -9606 100286946 LOC100286946 - - - 4 4p16.1 ribosomal protein S3A pseudogene pseudo - - - - 20121230 -9606 100286948 LOC100286948 - - - 5 5q33.3 apolipoprotein O pseudogene pseudo - - - - 20121230 -9606 100286954 LOC100286954 - - - 12 12p13.2 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100286958 LOC100286958 - - - 5 5q22.2 transmembrane protein 183A pseudogene pseudo - - - - 20121230 -9606 100286962 LOC100286962 - - - 20 20p12.1 ras homolog family member G pseudogene pseudo - - - - 20121230 -9606 100286963 DEFB109 - - - 8 8p23.1 defensin, beta 109 protein-coding - - - beta-defensin 109 20120401 -9606 100286964 TSPY23P - - HGNC:38594 Y Yq11.223 testis specific protein, Y-linked 23, pseudogene pseudo TSPY23P testis specific protein, Y-linked 23, pseudogene O - 20121209 -9606 100286965 CBX3P8 - - HGNC:42880 11 11p11.12 chromobox homolog 3 pseudogene 8 pseudo CBX3P8 chromobox homolog 3 pseudogene 8 O - 20121230 -9606 100286969 LOC100286969 - - - 19 19q13.31 uncharacterized LOC100286969 pseudo - - - - 20121209 -9606 100286971 UBDP1 - dJ994E9.3 HGNC:18796 6 6p22.1 ubiquitin D pseudogene 1 pseudo UBDP1 ubiquitin D pseudogene 1 O - 20121230 -9606 100286973 LOC100286973 - - - 6 6q16.1 protein phosphatase 1, catalytic subunit, alpha isozyme pseudogene pseudo - - - - 20121230 -9606 100286979 ANAPC1P1 - - HGNC:44150 2 2p11.2 anaphase promoting complex subunit 1 pseudogene 1 pseudo ANAPC1P1 anaphase promoting complex subunit 1 pseudogene 1 O - 20121230 -9606 100286986 LOC100286986 - - - 18 18p11.31 uncharacterized LOC100286986 unknown - - - - 20120511 -9606 100286989 HSPC081 - - - 1 1q23.2 uncharacterized LOC100286989 unknown - - - - 20120710 -9606 100286992 LOC100286992 - - - 18 18q21.32 signal recognition particle 19kDa pseudogene pseudo - - - - 20121230 -9606 100286996 TSPY22P - - HGNC:38522 Y Yq11.223 testis specific protein, Y-linked 22, pseudogene pseudo TSPY22P testis specific protein, Y-linked 22, pseudogene O - 20121230 -9606 100286997 LOC100286997 - - - 8 8q22.1 ribosomal protein L31 pseudogene pseudo - - - - 20121230 -9606 100287010 LOC100287010 - - - 2 2q12.1 uncharacterized LOC100287010 miscRNA - - - - 20121230 -9606 100287013 FAM86KP - - HGNC:44098 4 4p16.1 protein FAM86A-like pseudo FAM86KP family with sequence similarity 86, member K, pseudogene O - 20121209 -9606 100287014 LOC100287014 - - - 4 4q31.21 LysM, putative peptidoglycan-binding, domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100287015 LOC100287015 - - - 8 8p23.1 uncharacterized LOC100287015 miscRNA - - - - 20121230 -9606 100287016 DSTNP3 - - HGNC:34547 8 8q21.11 destrin (actin depolymerizing factor) pseudogene 3 pseudo DSTNP3 destrin (actin depolymerizing factor) pseudogene 3 O - 20121230 -9606 100287020 DUX4L8 - - HGNC:38670 4 4q35.2 double homeobox 4 like 8 (pseudogene) pseudo DUX4L8 double homeobox 4 like 8 (pseudogene) O - 20120511 -9606 100287026 TTTY25P - - HGNC:38524 Y Yq11.223 testis-specific transcript, Y-linked 25, pseudogene pseudo TTTY25P testis-specific transcript, Y-linked 25, pseudogene O - 20121230 -9606 100287028 LOC100287028 - - - 11 11p11.12 ankyrin repeat domain-containing protein 33B-like pseudo - - - - 20121209 -9606 100287029 DDX11L10 - DDX11L1|DDX11P HGNC:14125 16 16p13.3 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 10 pseudo DDX11L10 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 10 O - 20121230 -9606 100287033 LOC100287033 - - - X Xq21.31 TSC22 domain family, member 3 pseudogene pseudo - - - - 20121230 -9606 100287036 LOC100287036 - - - 16 16q24.3 uncharacterized LOC100287036 protein-coding - - - uncharacterized protein LOC100287036 20121230 -9606 100287042 LOC100287042 - - - 17 17q25.1 uncharacterized LOC100287042 miscRNA - - - - 20121230 -9606 100287045 FAM90A26P - - HGNC:43746 4 4p16.1 family with sequence similarity 90, member A26, pseudogene pseudo FAM90A26P family with sequence similarity 90, member A26, pseudogene O - 20121209 -9606 100287046 LOC100287046 - - - 5 5q13.2 glucuronidase, beta pseudogene pseudo - - - - 20121209 -9606 100287049 LOC100287049 - - - 1 1q23.2 uncharacterized LOC100287049 unknown - - - - 20121230 -9606 100287055 TSPY21P - - HGNC:38101 Y Yq11.223 testis specific protein, Y-linked 21, pseudogene pseudo TSPY21P testis specific protein, Y-linked 21, pseudogene O - 20121230 -9606 100287063 LOC100287063 - - - 3 3p22.1 uncharacterized LOC100287063 pseudo - - - - 20121209 -9606 100287065 BANF1P5 - - HGNC:43885 7 7q22.3 barrier to autointegration factor 1 pseudogene 5 pseudo BANF1P5 barrier to autointegration factor 1 pseudogene 5 O - 20121230 -9606 100287066 LOC100287066 - - - 8 8p23.1 defensin, beta 131 pseudogene pseudo - - - - 20121230 -9606 100287067 LOC100287067 - - - 9 9q21.31 mitochondrially encoded cytochrome c oxidase I pseuodgene pseudo - - - - 20121230 -9606 100287072 LOC100287072 - - - 17 17p11.2 ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene pseudo - - - - 20121230 -9606 100287074 LOC100287074 - - - 2 2q13 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) pseudogene pseudo - - - - 20121230 -9606 100287082 LOC100287082 - - - 18 18p11.22 uncharacterized LOC100287082 miscRNA - - - - 20121209 -9606 100287083 DEFT1P2 - - HGNC:33599 8 8p23.1 defensin, theta 1 pseudogene 2 pseudo DEFT1P2 defensin, theta 1 pseudogene 2 O - 20121209 -9606 100287084 ZNF72P - Cos8|ZNF72 HGNC:13142|MIM:194546 22 22q11.1 zinc finger protein 72, pseudogene pseudo ZNF72P zinc finger protein 72, pseudogene O - 20121021 -9606 100287085 OCIAD2P1 - - HGNC:31827 8 8q21.13 OCIA domain containing 2 pseudogene 1 pseudo OCIAD2P1 OCIA domain containing 2 pseudogene 1 O - 20121230 -9606 100287087 H3F3BP1 - - HGNC:42030 13 13q21.33 H3 histone, family 3B (H3.3B) pseudogene 1 pseudo H3F3BP1 H3 histone, family 3B (H3.3B) pseudogene 1 O - 20121230 -9606 100287091 ATP5LP5 - - HGNC:38167 3 3q25.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 5 pseudo ATP5LP5 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 5 O - 20121230 -9606 100287098 LOC100287098 - - - 8 8q24.3 uncharacterized LOC100287098 miscRNA - - - - 20121230 -9606 100287102 DDX11L1 - - HGNC:37102 1 1p36.33 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 pseudo DDX11L1 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 O - 20121230 -9606 100287114 LINC00421 - - HGNC:42755 13 13q12.11 long intergenic non-protein coding RNA 421 miscRNA LINC00421 long intergenic non-protein coding RNA 421 O - 20121230 -9606 100287128 IGHV1OR15-2 - IGHV1OR152 HGNC:5564|IMGT/GENE-DB:IGHV1/OR15-2 15 15q11.2 immunoglobulin heavy variable 1/OR15-2 (pseudogene) pseudo IGHV1OR15-2 immunoglobulin heavy variable 1/OR15-2 (pseudogene) O - 20121230 -9606 100287136 LOC100287136 - - - 7 7p11.2 capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100287140 HSPD1P14 - HSPD1-17P HGNC:35143 1 1p35.1 heat shock 60kDa protein 1 (chaperonin) pseudogene 14 pseudo HSPD1P14 heat shock 60kDa protein 1 (chaperonin) pseudogene 14 O - 20121230 -9606 100287144 USP17L10 - - HGNC:44438|Ensembl:ENSG00000231396|Vega:OTTHUMG00000160160 4 4p16.1 ubiquitin specific peptidase 17-like family member 10 protein-coding USP17L10 ubiquitin specific peptidase 17-like family member 10 O - 20121209 -9606 100287148 LOC100287148 - - - 12 12q22 peroxiredoxin 6 pseudogene pseudo - - - - 20121230 -9606 100287157 LOC100287157 - - - 8 8q11.21 cell division cycle associated 8 pseudogene pseudo - - - - 20121230 -9606 100287160 LOC100287160 - - - 19 19p13.11 uncharacterized LOC100287160 unknown - - - - 20121230 -9606 100287163 LOC100287163 - - - Un - zinc finger protein 717-like protein-coding - - - - 20121209 -9606 100287166 LOC100287166 - - - 20 20p11.23 uncharacterized LOC100287166 unknown - - - - 20121209 -9606 100287167 TTTY29P - - HGNC:38547 Y Yq11.223 testis-specific transcript, Y-linked 29, pseudogene pseudo TTTY29P testis-specific transcript, Y-linked 29, pseudogene O - 20120511 -9606 100287169 LOC100287169 - - - 8 8q22.2 ubiquitin-conjugating enzyme E2 variant 1-like pseudo - - - - 20121209 -9606 100287171 WASH1 - FAM39E|WASH HGNC:24361|MIM:613632 9 9p24.3 WAS protein family homolog 1 protein-coding WASH1 WAS protein family homolog 1 O CXYorf1-like protein on chromosome 9|FLJ00075 protein|family with sequence similarity 39, member E 20121230 -9606 100287173 UBE2V1P5 - - HGNC:44888 10 10q25.3 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 5 pseudo UBE2V1P5 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 5 O - 20121230 -9606 100287175 LOC100287175 - - - 16 16p13.3 uncharacterized LOC100287175 unknown - - - - 20121230 -9606 100287177 LOC100287177 - - Ensembl:ENSG00000267757|Vega:OTTHUMG00000182128 19 19q13.32 uncharacterized LOC100287177 protein-coding - - - uncharacterized protein LOC100287177 20121230 -9606 100287178 USP17L11 - - HGNC:44439|Ensembl:ENSG00000233136|Vega:OTTHUMG00000160162 4 4p16.1 ubiquitin specific peptidase 17-like family member 11 protein-coding USP17L11 ubiquitin specific peptidase 17-like family member 11 O - 20121209 -9606 100287183 LOC100287183 - - - 2 2p24.1 nuclear transport factor 2 pseudogene pseudo - - - - 20121230 -9606 100287188 LOC100287188 - - - 17 - family with sequence similarity 104, member B pseudogene pseudo - - - - 20121230 -9606 100287189 LOC100287189 - - - 11 11p11.2 Sec61 beta subunit pseudogene pseudo - - - - 20121230 -9606 100287191 LOC100287191 - - - 2 2q32.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100287193 ISCA2P1 - - HGNC:38022 22 22q12.1 iron-sulfur cluster assembly 2 homolog (S. cerevisiae) pseudogene 1 pseudo ISCA2P1 iron-sulfur cluster assembly 2 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100287195 LOC100287195 - - - Un - 60S ribosomal protein L23a-like pseudo - - - - 20121209 -9606 100287199 LOC100287199 - - - 20 20p11.23 protein LLP homolog pseudo - - - - 20121209 -9606 100287200 RAB9AP1 - - HGNC:38104 Y Yq11.223 RAB9A, member RAS oncogene family pseudogene 1 pseudo RAB9AP1 RAB9A, member RAS oncogene family pseudogene 1 O - 20121230 -9606 100287205 USP17L12 - - HGNC:44440|Ensembl:ENSG00000227551|Vega:OTTHUMG00000160148 4 4p16.1 ubiquitin specific peptidase 17-like family member 12 protein-coding USP17L12 ubiquitin specific peptidase 17-like family member 12 O - 20121230 -9606 100287210 LOC100287210 - - - 7 7q36.2 uncharacterized LOC100287210 unknown - - - - 20120511 -9606 100287211 LOC100287211 - - - 9 9p11.2 protein FAM27D1-like pseudo - - - - 20121102 -9606 100287212 LOC100287212 - - - 9 9q21.33 chromosome 4 open reading frame 3 pseudogene pseudo - - - - 20121230 -9606 100287215 UBL5P2 - - HGNC:44640 17 17q11.2 ubiquitin-like 5 pseudogene 2 pseudo UBL5P2 ubiquitin-like 5 pseudogene 2 O - 20121230 -9606 100287216 SH3RF3-AS1 - - HGNC:44168 2 2q12.3 SH3RF3 antisense RNA 1 miscRNA SH3RF3-AS1 SH3RF3 antisense RNA 1 O - 20121230 -9606 100287221 LOC100287221 - - - 16 16q24.2 uncharacterized LOC100287221 unknown - - - - 20120710 -9606 100287225 LOC100287225 - - - 18 18q21.2 uncharacterized LOC100287225 miscRNA - - - - 20121230 -9606 100287226 ZNF729 - - HGNC:32464|Ensembl:ENSG00000196350 19 19p12 zinc finger protein 729 protein-coding ZNF729 zinc finger protein 729 O - 20121230 -9606 100287227 TIPARP-AS1 - - HGNC:41028 3 3q25.31 TIPARP antisense RNA 1 miscRNA TIPARP-AS1 TIPARP antisense RNA 1 O - 20121230 -9606 100287229 BRD7P4 - - HGNC:37630 6 6q21 bromodomain containing 7 pseudogene 4 pseudo BRD7P4 bromodomain containing 7 pseudogene 4 O - 20121230 -9606 100287234 RAB9AP5 - - HGNC:38109 Y Yq11.223 RAB9A, member RAS oncogene family pseudogene 5 pseudo RAB9AP5 RAB9A, member RAS oncogene family pseudogene 5 O - 20121209 -9606 100287238 USP17L13 - - HGNC:44441|Ensembl:ENSG00000232399|Vega:OTTHUMG00000160152 4 4p16.1 ubiquitin specific peptidase 17-like family member 13 protein-coding USP17L13 ubiquitin specific peptidase 17-like family member 13 O - 20121230 -9606 100287243 LOC100287243 - - - 15 15q22.2 uncharacterized LOC100287243 pseudo - - - - 20121209 -9606 100287261 CSPG4P3Y - CSPG4P3|CSPG4P6Y HGNC:38111 Y Yq11.23 chondroitin sulfate proteoglycan 4 pseudogene 3, Y-linked pseudo CSPG4P3Y chondroitin sulfate proteoglycan 4 pseudogene 3, Y-linked O - 20121230 -9606 100287266 LOC100287266 - - - 1 1q43 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100287270 USP17L14P - - HGNC:44442 4 4p16.1 ubiquitin specific peptidase 17-like family member 14, pseudogene pseudo USP17L14P ubiquitin specific peptidase 17-like family member 14, pseudogene O - 20121230 -9606 100287272 USP8P1 - D84394.7|USP8P HGNC:13987 6 6p21.33 ubiquitin specific peptidase 8 pseudogene 1 pseudo USP8P1 ubiquitin specific peptidase 8 pseudogene 1 O - 20121230 -9606 100287275 LOC100287275 - - - 13 13q12.12 protein PCOTH pseudogene pseudo - - - - 20121230 -9606 100287279 UBE2V1P6 - - HGNC:44889 2 2q31.1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 6 pseudo UBE2V1P6 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 6 O - 20121230 -9606 100287284 MANSC4 - - HGNC:40023|Ensembl:ENSG00000205693|Vega:OTTHUMG00000169216 12 12p11.22 MANSC domain containing 4 protein-coding MANSC4 MANSC domain containing 4 O MANSC domain-containing protein 4|MANSC domain-containing protein ENSP00000370673 20121230 -9606 100287290 LOC100287290 - - - 3 3q25.32 cytokine receptor CRL2 protein-coding - - - - 20121230 -9606 100287294 LOC100287294 - - - 7 7p11.2 equilibrative nucleoside transporter 4-like protein-coding - - - - 20121209 -9606 100287296 LINC00265-2P - NCRNA00265-2P|NCRNA00265B HGNC:38523 Y Yq11.23 long intergenic non-protein coding RNA 265-2, pseudogene pseudo LINC00265-2P long intergenic non-protein coding RNA 265-2, pseudogene O - 20121209 -9606 100287301 GS52 - - - 16 16p13.3 uncharacterized LOC100287301 unknown - - - - 20121230 -9606 100287302 USP17L16P - - HGNC:44444 4 4p16.1 ubiquitin specific peptidase 17-like family member 16, pseudogene pseudo USP17L16P ubiquitin specific peptidase 17-like family member 16, pseudogene O - 20121209 -9606 100287306 LOC100287306 - - - 13 13q12.13 uncharacterized LOC100287306 unknown - - - - 20120710 -9606 100287309 LOC100287309 - - - 17 17p11.2 abhydrolase domain containing 15 pseudogene pseudo - - - - 20121230 -9606 100287313 LOC100287313 - - - 8 8q11.23 uncharacterized LOC100287313 protein-coding - - - - 20121209 -9606 100287314 LOC100287314 - - - 12 12p11.21 uncharacterized LOC100287314 miscRNA - - - - 20121230 -9606 100287320 LOC100287320 - - - Un - olfactory receptor 7E24-like pseudo - - - - 20121209 -9606 100287325 KRT8P37 - - HGNC:39871 10 10p14 keratin 8 pseudogene 37 pseudo KRT8P37 keratin 8 pseudogene 37 O - 20121230 -9606 100287327 USP17L17 - - HGNC:44445|Ensembl:ENSG00000249104|Vega:OTTHUMG00000160158 4 4p16.1 ubiquitin specific peptidase 17-like family member 17 protein-coding USP17L17 ubiquitin specific peptidase 17-like family member 17 O - 20121230 -9606 100287329 LOC100287329 - - - 6 6p21.33 uncharacterized LOC100287329 unknown - - - - 20121230 -9606 100287333 FAM27E1 - - HGNC:32014 9 9p11.2 family with sequence similarity 27, member E1 unknown FAM27E1 family with sequence similarity 27, member E1 O - 20121230 -9606 100287335 LOC100287335 - - - 14 14q24.2 transmembrane protein 183A pseudogene pseudo - - - - 20121230 -9606 100287345 LOC100287345 - - - 13 13q31.1 VENT homeobox pseudogene pseudo - - - - 20121230 -9606 100287348 LOC100287348 - - - Un - uncharacterized LOC100287348 pseudo - - - - 20121209 -9606 100287355 LOC100287355 - - - 12 12q21.33 microtubule-associated protein 1 light chain 3 beta pseudogene pseudo - - - - 20121230 -9606 100287357 LOC100287357 - - - 15 15q11.2 coxsackie virus and adenovirus receptor pseudogene pseudo - - - - 20121230 -9606 100287361 LOC100287361 - - - 2 2p14 peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121209 -9606 100287362 PRSS46 - TESSP6 HGNC:37325|Ensembl:ENSG00000261603|Vega:OTTHUMG00000177121 3 3p21.31 protease, serine, 46 protein-coding PRSS46 protease, serine, 46 O putative serine protease 46|testis serine protease 6 20121230 -9606 100287364 USP17L18 - - HGNC:44446|Ensembl:ENSG00000250844|Vega:OTTHUMG00000160153 4 4p16.1 ubiquitin specific peptidase 17-like family member 18 protein-coding USP17L18 ubiquitin specific peptidase 17-like family member 18 O - 20121230 -9606 100287366 OSTM1-AS1 - - HGNC:43666 6 6q21 OSTM1 antisense RNA 1 unknown OSTM1-AS1 OSTM1 antisense RNA 1 O - 20121230 -9606 100287368 LOC100287368 - - - 9 9p11.2 protein FAM27D1-like protein-coding - - - - 20121209 -9606 100287369 LOC100287369 - - - 12 12q23.2 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100287372 IGHV3OR16-13 - IGHV3OR1613 HGNC:5637|IMGT/GENE-DB:IGHV3/OR16-13 16 16p11.2 immunoglobulin heavy variable 3/OR16-13 (non-functional) pseudo IGHV3OR16-13 immunoglobulin heavy variable 3/OR16-13 (non-functional) O - 20121230 -9606 100287387 LOC100287387 - - - 2 2q37.3 uncharacterized LOC100287387 protein-coding - - - - 20121209 -9606 100287388 LIN28AP2 - - HGNC:38056 13 13q31.2 lin-28 homolog A (C. elegans) pseudogene 2 pseudo LIN28AP2 lin-28 homolog A (C. elegans) pseudogene 2 O - 20121230 -9606 100287399 LOC100287399 - - Ensembl:ENSG00000230031 15 15q11.2 POTE ankyrin domain family member B-like protein-coding - - - - 20121209 -9606 100287402 LOC100287402 - - - 3 3q27.3 uncharacterized LOC100287402 pseudo - - - - 20121230 -9606 100287404 USP17L19 - - HGNC:44447|Ensembl:ENSG00000248920|Vega:OTTHUMG00000160146 4 4p16.1 ubiquitin specific peptidase 17-like family member 19 protein-coding USP17L19 ubiquitin specific peptidase 17-like family member 19 O - 20121209 -9606 100287413 LOC100287413 - - - 11 11q12.1 uncharacterized LOC100287413 unknown - - - - 20121230 -9606 100287419 LOC100287419 - - - 2 2q13 cyclin-dependent kinase 8 pseudogene pseudo - - - - 20121230 -9606 100287425 LOC100287425 - - - 2 2q33.1 chromosome 7 open reading frame 73 pseudogene pseudo - - - - 20121230 -9606 100287427 LOC100287427 - - - 4 4q21.23 chromosome 18 open reading frame 21 pseudogene pseudo - - - - 20121230 -9606 100287428 PNMA6C hCG_1792470 - HGNC:41914|Ensembl:ENSG00000235961 X Xq28 paraneoplastic Ma antigen family member 6C protein-coding PNMA6C paraneoplastic Ma antigen family member 6C O paraneoplastic antigen like 6C|paraneoplastic antigen-like 6A related protein|paraneoplastic antigen-like protein 6A related|paraneoplastic antigen-like protein 6C 20121230 -9606 100287430 LOC100287430 - - - 6 6q22.1 ribosomal protein S5 pseudogene pseudo - - - - 20121230 -9606 100287441 USP17L20 - - HGNC:44448|Ensembl:ENSG00000250745|Vega:OTTHUMG00000160150 4 4p16.1 ubiquitin specific peptidase 17-like family member 20 protein-coding USP17L20 ubiquitin specific peptidase 17-like family member 20 O - 20121209 -9606 100287453 LOC100287453 - - - 19 19q13.33 neurotrophin 4 pseudogene pseudo - - - - 20121230 -9606 100287456 LOC100287456 - - - 21 21p11.2 uncharacterized LOC100287456 pseudo - - - - 20121209 -9606 100287461 MTND1P8 - - HGNC:42100 16 16p13.3 MT-ND1 pseudogene 8 pseudo MTND1P8 MT-ND1 pseudogene 8 O - 20121230 -9606 100287463 LOC100287463 - - - 19 19p13.2 uncharacterized LOC100287463 pseudo - - - - 20121209 -9606 100287466 PNMA6D - - HGNC:41924|Ensembl:ENSG00000257088 X Xq28 paraneoplastic Ma antigen family member 6D protein-coding PNMA6D paraneoplastic Ma antigen family member 6D O paraneoplastic antigen like 6D|paraneoplastic antigen-like protein 6D 20121209 -9606 100287467 LOC100287467 - - - 6 6q22.1 uncharacterized LOC100287467 unknown - - - - 20121117 -9606 100287469 LOC100287469 - - - 20 20p11.1 protein FAM27E2-like pseudo - - - - 20121209 -9606 100287470 LINC00265-3P - NCRNA00265-3P|NCRNA00265C HGNC:38536 Y Yq11.23 long intergenic non-protein coding RNA 265-3, pseudogene pseudo LINC00265-3P long intergenic non-protein coding RNA 265-3, pseudogene O - 20121209 -9606 100287472 LOC100287472 - - - 10 10q26.13 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100287477 LOC100287477 - - - 19 19q13.33 zinc finger protein 420-like protein-coding - - - uncharacterized protein LOC100287477 20121230 -9606 100287478 USP17L21 - - HGNC:44449|Ensembl:ENSG00000249811|Vega:OTTHUMG00000160149 4 4p16.1 ubiquitin specific peptidase 17-like family member 21 protein-coding USP17L21 ubiquitin specific peptidase 17-like family member 21 O - 20121209 -9606 100287482 SMKR1 - - HGNC:43561|Ensembl:ENSG00000240204|Vega:OTTHUMG00000157696 7 7q32.1 small lysine-rich protein 1 protein-coding SMKR1 small lysine-rich protein 1 O - 20121230 -9606 100287483 LOC100287483 - - - 19 19p13.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene pseudo - - - - 20121230 -9606 100287485 LOC100287485 - - - 11 11q12.1 glycine-N-acyltransferase-like 2 pseudogene pseudo - - - - 20121230 -9606 100287489 LOC100287489 - - - 19 19q13.33 neurotrophin 4 pseudogene pseudo - - - - 20121230 -9606 100287495 GCSHP4 - - HGNC:43930 12 12p13.31 glycine cleavage system protein H (aminomethyl carrier) pseudogene 4 pseudo GCSHP4 glycine cleavage system protein H (aminomethyl carrier) pseudogene 4 O - 20121230 -9606 100287497 LOC100287497 - - - 1 1q42.11 uncharacterized LOC100287497 unknown - - - - 20121230 -9606 100287498 LOC100287498 - - - 2 2q33.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa pseudogene pseudo - - - - 20121230 -9606 100287502 CSPG4P4Y - CSPG4P4|CSPG4P7Y HGNC:38535 Y Yq11.23 chondroitin sulfate proteoglycan 4 pseudogene 4, Y-linked pseudo CSPG4P4Y chondroitin sulfate proteoglycan 4 pseudogene 4, Y-linked O - 20121209 -9606 100287505 LOC100287505 - - - 12 12q21.33 bromodomain and WD repeat domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100287512 RPS3AP53 - - HGNC:44500 3 3p25.1 ribosomal protein S3a pseudogene 53 pseudo RPS3AP53 ribosomal protein S3a pseudogene 53 O - 20121230 -9606 100287513 USP17L22 - - HGNC:44450|Ensembl:ENSG00000248933|Vega:OTTHUMG00000160159 4 4p16.1 ubiquitin specific peptidase 17-like family member 22 protein-coding USP17L22 ubiquitin specific peptidase 17-like family member 22 O - 20121209 -9606 100287515 LOC100287515 - - - Un - zinc finger protein 26-like protein-coding - - - - 20121209 -9606 100287520 GLYATL1P3 - - HGNC:37865 11 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 3 pseudo GLYATL1P3 glycine-N-acyltransferase-like 1 pseudogene 3 O - 20121230 -9606 100287523 LOC100287523 - - - 2 2q11.1 zinc finger protein 2-like pseudo - - - - 20121230 -9606 100287525 LOC100287525 - - - 17 17q21.2 uncharacterized LOC100287525 unknown - - - - 20120511 -9606 100287528 IGLL4P - IGLL4 HGNC:38475 22 22q11.21 immunoglobulin lambda-like polypeptide 4, pseudogene pseudo IGLL4P immunoglobulin lambda-like polypeptide 4, pseudogene O - 20121230 -9606 100287534 LOC100287534 - - - 19 - killer cell immunoglobulin-like receptor 2DL4-like protein-coding - - - - 20121209 -9606 100287538 LOC100287538 - - - 16 16p13.3 uncharacterized LOC100287538 pseudo - - - - 20121222 -9606 100287539 LOC100287539 - - - 18 18q12.1 epsin 2 pseudogene pseudo - - - - 20121230 -9606 100287541 LOC100287541 - - - 22 22q11.21 POM121 transmembrane nucleoporin pseudogene pseudo - - - - 20121230 -9606 100287542 RAB9AP2 - - HGNC:38106 Y Yq11.23 RAB9A, member RAS oncogene family pseudogene 2 pseudo RAB9AP2 RAB9A, member RAS oncogene family pseudogene 2 O - 20121209 -9606 100287544 LOC100287544 - - - 12 12q22 s-adenosylmethionine synthase isoform type-2-like pseudo - - - - 20121230 -9606 100287549 LOC100287549 - - - Un - uncharacterized LOC100287549 pseudo - - - - 20121209 -9606 100287551 HSPA8P8 tcag7.1163 - HGNC:44923 7 7p21.3 heat shock 70kDa protein 8 pseudogene 8 pseudo HSPA8P8 heat shock 70kDa protein 8 pseudogene 8 O - 20121230 -9606 100287559 ADPGK-AS1 - - HGNC:44144 15 15q24.1 ADPGK antisense RNA 1 miscRNA ADPGK-AS1 ADPGK antisense RNA 1 O - 20121230 -9606 100287567 TRMT112P7 - - HGNC:44026 8 8q11.23 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 7 pseudo TRMT112P7 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 7 O - 20121230 -9606 100287569 LINC00173 - NCRNA00173 HGNC:33791 12 12q24.22 long intergenic non-protein coding RNA 173 miscRNA LINC00173 long intergenic non-protein coding RNA 173 O - 20121230 -9606 100287570 LOC100287570 - - - 2 2q33.3 peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121102 -9606 100287573 TOMM22P6 - - HGNC:38742 3 3q26.1 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 6 pseudo TOMM22P6 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 6 O - 20121230 -9606 100287575 LOC100287575 - - - 7 7p11.2 protein FAM27E2-like pseudo - - - - 20121209 -9606 100287576 LOC100287576 - - - 22 22q11.21 uncharacterized LOC100287576 unknown - - - - 20121230 -9606 100287577 RAB9AP3 - - HGNC:38107 Y Yq11.23 RAB9A, member RAS oncogene family pseudogene 3 pseudo RAB9AP3 RAB9A, member RAS oncogene family pseudogene 3 O - 20121209 -9606 100287579 TCEB1P22 - - HGNC:38158 11 11q23.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 22 pseudo TCEB1P22 transcription elongation factor B (SIII), polypeptide 1 pseudogene 22 O - 20121230 -9606 100287590 LOC100287590 - - - 17 17q21.2 uncharacterized LOC100287590 unknown - - - - 20120710 -9606 100287591 MTND1P22 - - HGNC:42093 4 4q32.1 MT-ND1 pseudogene 22 pseudo MTND1P22 MT-ND1 pseudogene 22 O - 20121230 -9606 100287592 LOC100287592 - - - 5 5q11.1 uncharacterized LOC100287592 miscRNA - - - - 20121209 -9606 100287596 DDX11L5 - - HGNC:37106 9 9p24.3 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5 pseudo DDX11L5 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5 O - 20121230 -9606 100287598 LOC100287598 - - - 16 16p13.2 uncharacterized LOC100287598 miscRNA - - - - 20121102 -9606 100287603 SSXP10 - psiSSX10 HGNC:30638 6 6q22.31 SSX family pseudogene 10 pseudo SSXP10 SSX family pseudogene 10 O - 20121230 -9606 100287605 LOC100287605 - - - 20 20p11.1 protein FAM27E2-like pseudo - - - - 20121209 -9606 100287606 TTTY28P - - HGNC:38534 Y Yq11.23 testis-specific transcript, Y-linked 28, pseudogene pseudo TTTY28P testis-specific transcript, Y-linked 28, pseudogene O - 20120511 -9606 100287610 LOC100287610 - - - Un - zinc finger protein 717-like pseudo - - - - 20121209 -9606 100287612 LOC100287612 - - - 6 6q21 uncharacterized LOC100287612 miscRNA - - - - 20121209 -9606 100287613 LOC100287613 - - - 7 7p21.1 Rho GTPase activating protein 20 pseudogene pseudo - - - - 20121230 -9606 100287614 LOC100287614 - - - 19 19p13.3 ribosomal protein S10 pseudogene pseudo - - - - 20121230 -9606 100287616 LOXL1-AS1 - - HGNC:44169 15 15q24.1 LOXL1 antisense RNA 1 miscRNA LOXL1-AS1 LOXL1 antisense RNA 1 O - 20121230 -9606 100287625 LOC100287625 - - - 12 12p13.31 suppressor of Ty 4 homolog 1 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100287628 LOC100287628 - - - 16 16p13.2 uncharacterized LOC100287628 miscRNA - - - - 20121209 -9606 100287630 PSAT1P4 - - HGNC:43990 3 3q26.1 phosphoserine aminotransferase 1 pseudogene 4 pseudo PSAT1P4 phosphoserine aminotransferase 1 pseudogene 4 O - 20121230 -9606 100287632 LOC100287632 - - - 6 6q22.31 selenoprotein K pseudogene pseudo - - - - 20121230 -9606 100287633 LOC100287633 - - - 7 7p11.2 protein FAM27E2-like protein-coding - - - - 20121209 -9606 100287635 LOC100287635 - - - 22 22q11.21 keratin 18 pseudogene pseudo - - - - 20121230 -9606 100287637 LOC100287637 - - - 15 15q11.1 uncharacterized LOC100287637 pseudo - - - - 20121209 -9606 100287639 LOC100287639 - - - 3 3q11.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene pseudo - - - - 20121230 -9606 100287647 PCMTD1P2 - - HGNC:38805 16 16p11.2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 2 pseudo PCMTD1P2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 2 O - 20121230 -9606 100287651 LOC100287651 - - - 8 8q12.1 lipoxygenase homology domain-containing protein 1-like protein-coding - - - - 20121209 -9606 100287653 LOC100287653 - - - 12 12q24.23 PDGFA associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100287663 LOC100287663 - - - 7 7p11.2 protein FAM27E2-like pseudo - - - - 20121209 -9606 100287664 TSRM - - - 7 7q31.1 zinc finger domain-related protein TSRM unknown - - - - 20121230 -9606 100287672 LOC100287672 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100287680 SUB1P2 - - HGNC:43992 14 14q24.3 SUB1 homolog (S. cerevisiae) pseudogene 2 pseudo SUB1P2 SUB1 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100287682 EXTL2P1 - EXTL2P HGNC:3517 2 2q31.1 exostoses (multiple)-like 2 pseudogene 1 pseudo EXTL2P1 exostoses (multiple)-like 2 pseudogene 1 O - 20121230 -9606 100287685 LOC100287685 - - - 1 1p36.33 uncharacterized LOC100287685 unknown - - - - 20120511 -9606 100287692 TCEB1P24 - TCEB1P25 HGNC:38160 X|Y Xq28 and Yq12 transcription elongation factor B (SIII), polypeptide 1 pseudogene 24 pseudo TCEB1P24 transcription elongation factor B (SIII), polypeptide 1 pseudogene 24 O - 20121230 -9606 100287702 LOC100287702 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100287704 LOC100287704 - - - 7 7q11.21 uncharacterized LOC100287704 miscRNA - - - - 20121230 -9606 100287708 LOC100287708 - - - 10 10q11.23 coiled-coil domain containing 58 pseudogene pseudo - - - - 20121230 -9606 100287715 LOC100287715 - - - 17 17q21.2 keratin associated protein 16-1 pseudogene pseudo - - - - 20121230 -9606 100287718 ANKRD66 - - HGNC:44669|Ensembl:ENSG00000230062|Vega:OTTHUMG00000014791 6 6p12.3 ankyrin repeat domain 66 protein-coding ANKRD66 ankyrin repeat domain 66 O hypothetical protein LOC100287718 20121230 -9606 100287722 AP4B1-AS1 - - HGNC:44114 1 1p13.2 AP4B1 antisense RNA 1 miscRNA AP4B1-AS1 AP4B1 antisense RNA 1 O - 20121230 -9606 100287723 LOC100287723 - - - 2 2p11.2 Ig kappa chain V-I region Walker-like other - - - - 20121209 -9606 100287725 LOC100287725 - - - 19 19p13.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20121230 -9606 100287728 LOC100287728 - - - X Xq26.3 uncharacterized LOC100287728 miscRNA - - - - 20121230 -9606 100287735 TTTY13B - pFIV HGNC:38596 Y Yp11.2 testis-specific transcript, Y-linked 13B miscRNA TTTY13B testis-specific transcript, Y-linked 13B O - 20120617 -9606 100287745 MTATP6P2 - - HGNC:44576 5 5q21.1 mitochondrially encoded ATP synthase 6 pseudogene 2 pseudo MTATP6P2 mitochondrially encoded ATP synthase 6 pseudogene 2 O - 20121230 -9606 100287747 LOC100287747 - - - 16 16p11.1 TP53 target 3B pseudogene pseudo - - - - 20121230 -9606 100287754 LOC100287754 - - - 19 19p13.2 zinc finger protein 44 pseudogene pseudo - - - - 20121230 -9606 100287755 ATP5G1P4 - - HGNC:39507 3 3q26.31 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 4 pseudo ATP5G1P4 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 4 O - 20121230 -9606 100287757 LOC100287757 - - - X Xq27.3 SRA stem-loop interacting RNA binding protein pseudogene pseudo - - - - 20121230 -9606 100287765 LINC00630 - - HGNC:44263 X Xq22.1 long intergenic non-protein coding RNA 630 miscRNA LINC00630 long intergenic non-protein coding RNA 630 O - 20121230 -9606 100287768 COX6A1P3 - - HGNC:37633 6 6q22.31 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 3 pseudo COX6A1P3 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 3 O - 20121230 -9606 100287769 RBMY1GP - RBMY1G HGNC:9915 Y Yp11.2 RNA binding motif protein, Y-linked, family 1, member G, pseudogene pseudo RBMY1GP RNA binding motif protein, Y-linked, family 1, member G, pseudogene O - 20121230 -9606 100287778 TCEB1P20 - - HGNC:38156 1 1p13.2-p13.1 transcription elongation factor B (SIII), polypeptide 1 pseudogene 20 pseudo TCEB1P20 transcription elongation factor B (SIII), polypeptide 1 pseudogene 20 O - 20121230 -9606 100287785 LINC00266-2P - NCRNA00266-2P|NCRNA00266B|NCRNA00266Y|NCRNA00266Y1 HGNC:38529 Y Yq11.23 long intergenic non-protein coding RNA 266-2, pseudogene pseudo LINC00266-2P long intergenic non-protein coding RNA 266-2, pseudogene O - 20121230 -9606 100287791 LOC100287791 - - - 4 4p16.1 uncharacterized LOC100287791 pseudo - - - - 20121209 -9606 100287792 LOC100287792 - - - 20 20q11.23 uncharacterized LOC100287792 miscRNA - - - - 20121230 -9606 100287794 LOC100287794 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100287798 FAM197Y8 - - HGNC:37470 Y Yp11.2 family with sequence similarity 197, Y-linked, member 8 protein-coding FAM197Y8 family with sequence similarity 197, Y-linked, member 8 O - 20121209 -9606 100287808 LOC100287808 - - - 17 17q12 uncharacterized LOC100287808 unknown - - - - 20121230 -9606 100287813 LOC100287813 - - - 1 1q24.2 uncharacterized LOC100287813 pseudo - - - - 20121209 -9606 100287814 LINC00582 - - HGNC:43842 1 1q42.2 long intergenic non-protein coding RNA 582 miscRNA LINC00582 long intergenic non-protein coding RNA 582 O - 20121230 -9606 100287817 NDUFS5P4 - - HGNC:44042 4 4q23 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 4 pseudo NDUFS5P4 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 4 O - 20121230 -9606 100287818 TTTY26P - - HGNC:38528 Y Yp11.2 testis-specific transcript, Y-linked 26, pseudogene pseudo TTTY26P testis-specific transcript, Y-linked 26, pseudogene O - 20120511 -9606 100287822 SETP10 - - HGNC:42929 1 1q25.2 SET pseudogene 10 pseudo SETP10 SET pseudogene 10 O - 20121230 -9606 100287823 LOC100287823 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100287825 LOC100287825 tcag7.1141 - - 7 7p14.3 golgin A8 family, member A pseudogene pseudo - - - - 20121230 -9606 100287826 FAM197Y7 - - HGNC:37469 Y Yp11.2 family with sequence similarity 197, Y-linked, member 7 protein-coding FAM197Y7 family with sequence similarity 197, Y-linked, member 7 O - 20121209 -9606 100287834 LOC100287834 - - - 7 7q11.21 uncharacterized LOC100287834 miscRNA - - - - 20121230 -9606 100287837 LOC100287837 - - - 11 11q13.4 uncharacterized LOC100287837 protein-coding - - - - 20121230 -9606 100287840 LOC100287840 - - - 1 1p13.1 tetraspanin 12 pseudogene pseudo - - - - 20121230 -9606 100287844 TTTY30P - - HGNC:38604 Y Yp11.2 testis-specific transcript, Y-linked 30, pseudogene pseudo TTTY30P testis-specific transcript, Y-linked 30, pseudogene O - 20121230 -9606 100287845 GOLGA6L16P - - HGNC:38117 Y Yq11.23 golgin A6 family-like 16, pseudogene pseudo GOLGA6L16P golgin A6 family-like 16, pseudogene O - 20121230 -9606 100287846 LOC100287846 - - - 8 8q11.21 patched 1 pseudogene pseudo - - - - 20121230 -9606 100287852 LOC100287852 - - - 3 3q12.3 protein FAM136A-like protein-coding - - - - 20121209 -9606 100287856 LOC100287856 - - - 6 6q22.33 cornichon homolog 4 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100287859 FAM197Y6 - - HGNC:37468 Y Yp11.2 family with sequence similarity 197, Y-linked, member 6 protein-coding FAM197Y6 family with sequence similarity 197, Y-linked, member 6 O - 20121209 -9606 100287868 LOC100287868 - - - X Xq13.1 nuclear transport factor 2 pseudogene pseudo - - - - 20121230 -9606 100287869 LOC100287869 - - - 6 6p12.2 uncharacterized LOC100287869 unknown - - - - 20120622 -9606 100287874 TTTY27P - - HGNC:38527 Y Yp11.2 testis-specific transcript, Y-linked 27, pseudogene pseudo TTTY27P testis-specific transcript, Y-linked 27, pseudogene O - 20120511 -9606 100287877 LOC100287877 - - - 1 1p36.31 uncharacterized LOC100287877 unknown - - - - 20120508 -9606 100287879 LOC100287879 - - - 3 3p14.1 uncharacterized LOC100287879 miscRNA - - - - 20121230 -9606 100287880 NDUFA4P2 - NDUFA4L|bcm1723 HGNC:31362 3 3q13.11 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa, pseudogene 2 pseudo NDUFA4P2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa, pseudogene 2 O - 20121230 -9606 100287887 RPL13AP25 - FWP004|RPL13A_11_1314|S863-4 HGNC:36981 13 13q14.3 ribosomal protein L13a pseudogene 25 pseudo RPL13AP25 ribosomal protein L13a pseudogene 25 O - 20121230 -9606 100287894 LOC100287894 - - - 7 7q11.21 uncharacterized LOC100287894 pseudo - - - - 20121209 -9606 100287895 LOC100287895 - - - 8 8q12.3 asparaginyl-tRNA synthetase pseudogene pseudo - - - - 20121230 -9606 100287896 LOC100287896 hCG_2042286 - - 11 11q13.4 uncharacterized LOC100287896 unknown - - - - 20121230 -9606 100287898 TTC34 - - HGNC:34297|Ensembl:ENSG00000215912 1 1p36.32 tetratricopeptide repeat domain 34 protein-coding TTC34 tetratricopeptide repeat domain 34 O TPR repeat protein 34|TPR repeat-containing protein ENSP00000383873|tetratricopeptide repeat protein 34 20121230 -9606 100287900 GM2AP2 - - HGNC:38002 1 1q24.3 GM2 ganglioside activator pseudogene 2 pseudo GM2AP2 GM2 ganglioside activator pseudogene 2 O - 20121230 -9606 100287902 LGALS8-AS1 - - HGNC:40340 1 1q43 LGALS8 antisense RNA 1 miscRNA LGALS8-AS1 LGALS8 antisense RNA 1 O - 20121230 -9606 100287905 TTTY31P - - HGNC:38711 Y Yp11.2 testis-specific transcript, Y-linked 31, pseudogene pseudo TTTY31P testis-specific transcript, Y-linked 31, pseudogene O - 20120511 -9606 100287908 LOC100287908 - - - 15 15q11.2 zinc finger protein 519 pseudogene pseudo - - - - 20121230 -9606 100287912 LOC100287912 - - - 2 2p12 ankyrin repeat domain 11 pseudogene pseudo - - - - 20121230 -9606 100287916 LOC100287916 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100287919 VN1R30P - - HGNC:37350 7 7q11.21 vomeronasal 1 receptor 30 pseudogene pseudo VN1R30P vomeronasal 1 receptor 30 pseudogene O - 20121230 -9606 100287922 ANKRD18CP - - HGNC:43601 9 9q22.33 ankyrin repeat domain 18C, pseudogene pseudo ANKRD18CP ankyrin repeat domain 18C, pseudogene O - 20121230 -9606 100287928 LOC100287928 - - - X Xp22.32 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit pseudogene pseudo - - - - 20121230 -9606 100287931 LOC100287931 - - - 4 4p16.3 uncharacterized LOC100287931 unknown - - - - 20121117 -9606 100287932 TIMM23 RP11-481A12.7 TIM23 HGNC:17312|MIM:605034|Ensembl:ENSG00000138297|Vega:OTTHUMG00000018213 10 10q11.23 translocase of inner mitochondrial membrane 23 homolog (yeast) protein-coding TIMM23 translocase of inner mitochondrial membrane 23 homolog (yeast) O mitochondrial import inner membrane translocase subunit Tim23 20121230 -9606 100287934 LOC100287934 - - - 1 1p36.33 uncharacterized LOC100287934 unknown - - - - 20121230 -9606 100287941 TTTY24P - - HGNC:38521 Y Yp11.2 testis-specific transcript, Y-linked 24, pseudogene pseudo TTTY24P testis-specific transcript, Y-linked 24, pseudogene O - 20121230 -9606 100287944 LOC100287944 - - - 12 12q23.3 uncharacterized LOC100287944 miscRNA - - - - 20121230 -9606 100287945 LOC100287945 - - - 15 15q11.2 uncharacterized LOC100287945 pseudo - - - - 20121209 -9606 100287948 GM140 - - - 1 1q25.3 uncharacterized LOC100287948 miscRNA - - - - 20121230 -9606 100287951 LOC100287951 - - - 4 4p16.1 dynein, light chain, Tctex-type 1 pseudogene pseudo - - - - 20121230 -9606 100287954 LOC100287954 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100287960 HIGD1AP10 - - HGNC:43005 11 11q13.1 HIG1 hypoxia inducible domain family, member 1A pseudogene 10 pseudo HIGD1AP10 HIG1 hypoxia inducible domain family, member 1A pseudogene 10 O - 20121230 -9606 100287964 ATP5LP7 - - HGNC:38169 17 17q21.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 7 pseudo ATP5LP7 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 7 O - 20120726 -9606 100287965 LOC100287965 - - - 2 2q32.2 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene pseudo - - - - 20121230 -9606 100287966 LOC100287966 - - - 22 22q11.22 sodium/glucose cotransporter 1-like pseudo - - - - 20121209 -9606 100287979 TTTY13C - - HGNC:38613 Y Yp11.2 testis-specific transcript, Y-linked 13C protein-coding TTTY13C testis-specific transcript, Y-linked 13C O - 20120511 -9606 100287985 LOC100287985 - - - 2 2p12 ring-box 1, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 100287990 LOC100287990 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100287991 LOC100287991 - - - 6 6p12.3 myotubularin-related protein 9-like pseudo - - - - 20121209 -9606 100288001 LOC100288001 - - - 8 8q13.1 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100288008 LOC100288008 - - - 18 18q21.1 proline rich 13 pseudogene pseudo - - - - 20121230 -9606 100288010 LOC100288010 - - - 5 5q33.2 cytochrome c oxidase subunit VIIa polypeptide 2 like pseudogene pseudo - - - - 20121230 -9606 100288013 LOC100288013 - - - 8 8q11.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa pseudogene pseudo - - - - 20121230 -9606 100288016 LOC100288016 - - - 3 3q29 serine/threonine-protein phosphatase 4 regulatory subunit 2-like pseudo - - - - 20121230 -9606 100288019 LOC100288019 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100288022 VN1R33P - - HGNC:37353 7 7q11.21 vomeronasal 1 receptor 33 pseudogene pseudo VN1R33P vomeronasal 1 receptor 33 pseudogene O - 20121230 -9606 100288025 DYZ1L2 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100288028 LOC100288028 - - - 14 14q32.13 coiled-coil domain containing 59 pseudogene pseudo - - - - 20121230 -9606 100288031 LOC100288031 - - - X Xp22.31 BRICK1, SCAR/WAVE actin-nucleating complex subunit pseudogene pseudo - - - - 20121230 -9606 100288035 LOC100288035 - - - 9 9p22.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa pseudogene pseudo - - - - 20121230 -9606 100288038 HNRNPA1P28 - - HGNC:39546 X Xq24 heterogeneous nuclear ribonucleoprotein A1 pseudogene 28 pseudo HNRNPA1P28 heterogeneous nuclear ribonucleoprotein A1 pseudogene 28 O - 20121230 -9606 100288042 LOC100288042 - - - 15 15q11.2 zinc finger protein 519 pseudogene pseudo - - - - 20121230 -9606 100288049 LOC100288049 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100288053 DYZ1L3 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288067 LOC100288067 - - - 9 9q22.33 uncharacterized LOC100288067 pseudo - - - - 20121209 -9606 100288069 LOC100288069 - - - 1 1p36.33 general transcription factor IIi pseudogene pseudo - - - - 20121230 -9606 100288072 SDR42E2 - - HGNC:35414 16 16p12.2 short chain dehydrogenase/reductase family 42E, member 2 protein-coding SDR42E2 short chain dehydrogenase/reductase family 42E, member 2 O Putative 3-beta-HSD family protein ENSP00000330812|putative short-chain dehydrogenase/reductase family 42E member 2 20121021 -9606 100288073 LOC100288073 - - - 4 4q32.3 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) pseudogene pseudo - - - - 20121230 -9606 100288077 WTAPP1 - - HGNC:44115 11 11q22.2 Wilms tumor 1 associated protein pseudogene 1 pseudo WTAPP1 Wilms tumor 1 associated protein pseudogene 1 O - 20121230 -9606 100288079 LOC100288079 - - - 1 1q25.3 microtubule-associated protein 1 light chain 3 beta pseudogene pseudo - - - - 20121230 -9606 100288081 LOC100288081 - - - Un - olfactory receptor 4F3/4F16/4F29-like pseudo - - - - 20121209 -9606 100288083 LOC100288083 - - - 7 7p14.1 protein capicua homolog pseudo - - - - 20121230 -9606 100288085 DYZ1L5 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288093 LOC100288093 - - - 19 19q13.42 nuclear RNA export factor 3 pseudogene pseudo - - - - 20121230 -9606 100288097 LOC100288097 - - - 8 8q13.3 BCL2-associated athanogene 4 pseudogene pseudo - - - - 20121230 -9606 100288102 LOC100288102 - - - 1 1q42.11 uncharacterized LOC100288102 miscRNA - - - - 20121209 -9606 100288111 LOC100288111 - - - 11 11q22.2 bolA homolog 3 (E. coli) pseudogene pseudo - - - - 20121230 -9606 100288112 OR11J7P - - HGNC:38589 15 15q11.2 olfactory receptor, family 11, subfamily J, member 7 pseudogene pseudo OR11J7P olfactory receptor, family 11, subfamily J, member 7 pseudogene O - 20121230 -9606 100288114 LOC100288114 - - - 19 19q13.43 uncharacterized LOC100288114 unknown - - - - 20120511 -9606 100288115 LOC100288115 - - - 3 3q29 uncharacterized LOC100288115 pseudo - - - - 20121209 -9606 100288119 LOC100288119 - - - 4 - capicua homolog pseudogene pseudo - - - - 20121209 -9606 100288122 LOC100288122 - - - 18 18p11.21 uncharacterized LOC100288122 miscRNA - - - - 20121230 -9606 100288123 LOC100288123 - - - 19 19p13.3 uncharacterized LOC100288123 miscRNA - - - - 20121230 -9606 100288124 DYZ1L8 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288125 LOC100288125 - - - 9 9q22.33 NME/NM23 nucleoside diphosphate kinase 2 pseudogene pseudo - - - - 20121230 -9606 100288129 LOC100288129 - - - 12 12q13.11 acireductone dioxygenase 1 pseudogene pseudo - - - - 20121230 -9606 100288130 SOGA2P1 - CCDC165P1 HGNC:42040 13 13q21.33 SOGA family member 2 pseudogene 1 pseudo SOGA2P1 SOGA family member 2 pseudogene 1 O - 20121230 -9606 100288136 LOC100288136 - - - 5 5q11.2 protein mago nashi homolog pseudo - - - - 20121209 -9606 100288139 PIH2 - - - 8 8q13.3 pregnancy-induced hypertension syndrome-related protein unknown - - - - 20120710 -9606 100288142 LOC100288142 - - - 1 1q21.2 neuroblastoma breakpoint family member unknown - - - - 20121230 -9606 100288144 LOC100288144 - - - 14 14q32.33 uncharacterized LOC100288144 unknown - - - - 20121230 -9606 100288146 LOC100288146 - - - 4 4q24 nucleoporin Nup43-like pseudo - - - - 20121230 -9606 100288148 OR11J6P - - HGNC:38588 15 15q11.2 olfactory receptor, family 11, subfamily J, member 6 pseudogene pseudo OR11J6P olfactory receptor, family 11, subfamily J, member 6 pseudogene O - 20121227 -9606 100288149 NDUFS5P3 - - HGNC:44041 1 1p32.3 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 3 pseudo NDUFS5P3 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 3 O - 20121230 -9606 100288151 LOC100288151 - - - 21 21q21.1 SREK1-interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 100288152 LOC100288152 - - - 5 5p15.33 uncharacterized LOC100288152 unknown - - - - 20121230 -9606 100288157 DYZ1L9 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288160 LOC100288160 - - - 14 14q32.2 esophagus cancer-related gene-2 interaction susceptibility protein unknown - - - - 20121230 -9606 100288162 LOC100288162 - - - 16 16p13.11 uncharacterized LOC100288162 miscRNA - - - - 20121230 -9606 100288165 HMGN2P15 - - HGNC:39020 17 17q21.31 high mobility group nucleosomal binding domain 2 pseudogene 15 pseudo HMGN2P15 high mobility group nucleosomal binding domain 2 pseudogene 15 O - 20121230 -9606 100288170 LOC100288170 - - - 6 6q14.1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo - - - - 20121230 -9606 100288172 LOC100288172 - - - 4 4p16.3 WEE1 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100288173 TRMT112P4 - - HGNC:44023 9 9q31.1 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 4 pseudo TRMT112P4 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 4 O - 20121230 -9606 100288175 LOC100288175 - - - 1 1p36.33 uncharacterized LOC100288175 unknown - - - - 20121102 -9606 100288179 TSEN15P1 - - HGNC:43962 17 17p11.2 tRNA splicing endonuclease 15 homolog (S. cerevisiae) pseudogene 1 pseudo TSEN15P1 tRNA splicing endonuclease 15 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100288181 LOC100288181 - - - 8 8q24.3 uncharacterized LOC100288181 miscRNA - - - - 20121230 -9606 100288185 PPIAP1 - PPIAP HGNC:9254 21 21q21.1 peptidylprolyl isomerase A (cyclophilin A), pseudogene 1 pseudo PPIAP1 peptidylprolyl isomerase A (cyclophilin A), pseudogene 1 O - 20121230 -9606 100288188 DYZ1L10 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288192 LOC100288192 - - - 2 2q14.3 archaelysin family metallopeptidase 2 pseudogene pseudo - - - - 20121230 -9606 100288195 VN1R104P - - HGNC:37427 19 19q13.42 vomeronasal 1 receptor 104 pseudogene pseudo VN1R104P vomeronasal 1 receptor 104 pseudogene O - 20121230 -9606 100288198 LOC100288198 - - - 6 6q14.1 uncharacterized LOC100288198 miscRNA - - - - 20121230 -9606 100288203 LOC100288203 - - - 15 15q13.2 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene pseudo - - - - 20121230 -9606 100288208 LOC100288208 - - - 13 13q22.1 uncharacterized LOC100288208 unknown - - - - 20121230 -9606 100288211 LOC100288211 - - - 19 19q13.43 PPPDE peptidase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100288220 DYZ1L11 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100288222 ATP5G1P8 - - HGNC:39511 10 10q22.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 8 pseudo ATP5G1P8 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 8 O - 20121230 -9606 100288227 MTND1P27 - - HGNC:42076 2 2q22.1 MT-ND1 pseudogene 27 pseudo MTND1P27 MT-ND1 pseudogene 27 O - 20121230 -9606 100288233 LOC100288233 - - - X Xp22.11 ribosomal protein L23 pseudogene pseudo - - - - 20121230 -9606 100288235 LOC100288235 - - - 5 5q23.2 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100288238 LOC100288238 - - - 9 9p21.3 uncharacterized LOC100288238 unknown - - - - 20120511 -9606 100288241 LOC100288241 - - - 15 15q25.2 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene pseudo - - - - 20121230 -9606 100288248 ZNHIT1P1 - - HGNC:44474 8 8q24.3 zinc finger, HIT-type containing 1 pseudogene 1 pseudo ZNHIT1P1 zinc finger, HIT-type containing 1 pseudogene 1 O - 20121230 -9606 100288250 ISCA1P5 - - HGNC:38026 19 19p13.11 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 5 pseudo ISCA1P5 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 5 O - 20121230 -9606 100288252 LOC100288252 - - - 21 21q21.3 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 100288254 FLJ40453 - - - 5 5q35.1 uncharacterized LOC100288254 other - - - - 20120710 -9606 100288255 LOC100288255 - - - Un - FSHD region gene 2-like protein-coding - - - - 20121209 -9606 100288259 DYZ1L12 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288264 VN1R105P - - HGNC:37428 19 19q13.42 vomeronasal 1 receptor 105 pseudogene pseudo VN1R105P vomeronasal 1 receptor 105 pseudogene O - 20121230 -9606 100288268 LOC100288268 - - - 7 7q11.21 uncharacterized LOC100288268 pseudo - - - - 20121209 -9606 100288283 LOC100288283 - - - 2 2p22.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100288287 KRTAP22-2 - KAP22.2 HGNC:37091|Ensembl:ENSG00000206106|Vega:OTTHUMG00000065630 21 21q22.11 keratin associated protein 22-2 protein-coding KRTAP22-2 keratin associated protein 22-2 O keratin-associated protein 22-2 20121230 -9606 100288289 LOC100288289 - - - Un - double homeobox protein 4-like pseudo - - - - 20121209 -9606 100288293 DYZ1L13 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288298 GCSHP2 - - HGNC:43927 14 14q32.32 glycine cleavage system protein H (aminomethyl carrier) pseudogene 2 pseudo GCSHP2 glycine cleavage system protein H (aminomethyl carrier) pseudogene 2 O - 20121230 -9606 100288306 LOC100288306 - - - 5 5q23.2 uncharacterized LOC100288306 unknown - - - - 20120511 -9606 100288307 USMG5P1 RP3-368A4.1 - HGNC:31716 X Xq13.2 up-regulated during skeletal muscle growth 5 homolog (mouse) pseudogene 1 pseudo USMG5P1 up-regulated during skeletal muscle growth 5 homolog (mouse) pseudogene 1 O - 20121230 -9606 100288310 LOC100288310 - - - 8 8q13.3 uncharacterized LOC100288310 unknown - - - - 20121230 -9606 100288315 LOC100288315 - - - 16 16p11.2 uncharacterized LOC100288315 protein-coding - - - - 20120710 -9606 100288318 LOC100288318 - - - 8 8q24.3 uncharacterized protein FLJ40521-like other - - - - 20120622 -9606 100288319 AK3P5 - - HGNC:39064 10 10p11.22 adenylate kinase 3 pseudogene 5 pseudo AK3P5 adenylate kinase 3 pseudogene 5 O - 20121230 -9606 100288323 KRTAP21-3 - - HGNC:34216|Ensembl:ENSG00000231068|Vega:OTTHUMG00000125533 21 21q22.11 keratin associated protein 21-3 protein-coding KRTAP21-3 keratin associated protein 21-3 O keratin-associated protein 21-3 20121230 -9606 100288325 LOC100288325 - - - Un - double homeobox protein 4-like pseudo - - - - 20121209 -9606 100288329 DYZ1L14 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100288330 H2AFZP5 - - HGNC:38018 10 10q22.3 H2A histone family, member Z pseudogene 5 pseudo H2AFZP5 H2A histone family, member Z pseudogene 5 O - 20121230 -9606 100288332 LOC100288332 - - Ensembl:ENSG00000183793|Vega:OTTHUMG00000166305 16 16p13.11 NPIP-like protein 1-like protein-coding - - - - 20121209 -9606 100288336 LOC100288336 - - - 21 21q22.3 Putative uncharacterized protein ENSP00000383251 protein-coding - - - - 20121230 -9606 100288337 LOC100288337 - - - 4 4q34.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa pseudogene pseudo - - - - 20121230 -9606 100288339 LOC100288339 - - - 12 12q24.32 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa pseudogene pseudo - - - - 20121230 -9606 100288343 SLC25A14P1 - - HGNC:43856 4 4q21.23 solute carrier family 25 (mitochondrial carrier, brain), member 14 pseudogene 1 pseudo SLC25A14P1 solute carrier family 25 (mitochondrial carrier, brain), member 14 pseudogene 1 O - 20121230 -9606 100288346 LOC100288346 - - - 11 11q23.2 uncharacterized LOC100288346 miscRNA - - - - 20121230 -9606 100288355 LOC100288355 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121222 -9606 100288358 LOC100288358 - - - 16 16q23.1 uncharacterized LOC100288358 unknown - - - - 20120511 -9606 100288363 DYZ1L15 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288365 LOC100288365 - - - 11 11p15.3 activating transcription factor 7 interacting protein 2 pseudogene pseudo - - - - 20121230 -9606 100288367 LOC100288367 - - - 15 15q25.2 golgin A2 pseudogene pseudo - - - - 20121230 -9606 100288378 LOC100288378 - - - 12 12p12.1 leucine rich repeat containing 34 pseudogene pseudo - - - - 20121230 -9606 100288379 LOC100288379 - - - 1 1p36.33 ribosomal protein S7 pseudogene pseudo - - - - 20121230 -9606 100288380 ULK4P2 - D-X|FAM7A2 HGNC:15776 15 15q13.2 unc-51-like kinase 4 (C. elegans) pseudogene 2 pseudo ULK4P2 unc-51-like kinase 4 (C. elegans) pseudogene 2 O - 20121230 -9606 100288385 LOC100288385 - - - 11 11q23.2 cytochrome c oxidase subunit VIIa polypeptide 2 like pseudogene pseudo - - - - 20121230 -9606 100288392 LOC100288392 - - - 4 4p16.1 olfactory receptor pseudogene pseudo - - - - 20121230 -9606 100288397 RAB9AP4 - - HGNC:38108 Y Yq11.222 RAB9A, member RAS oncogene family pseudogene 4 pseudo RAB9AP4 RAB9A, member RAS oncogene family pseudogene 4 O - 20121209 -9606 100288398 LOC100288398 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121222 -9606 100288402 DYZ1L17 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288405 SFTPA3P RP11-589B3.3 COLEC6|SFTPAP1|SFTPP1 HGNC:10800 10 10q22.3 surfactant protein A3, pseudogene pseudo SFTPA3P surfactant protein A3, pseudogene O - 20121230 -9606 100288413 ERVMER34-1 hCG_1746629 - HGNC:42970|Ensembl:ENSG00000226887|Vega:OTTHUMG00000150366 4 4q12 endogenous retrovirus group MER34, member 1 protein-coding ERVMER34-1 endogenous retrovirus group MER34, member 1 O HERV-MER_4q12 provirus ancestral Env polyprotein|LP9056 protein|endogenous retrovirus group MER34 member 1 20121230 -9606 100288416 LOC100288416 - - - 9 9q31.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene pseudo - - - - 20121230 -9606 100288420 LOC100288420 - - - 17 17p11.2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene pseudo - - - - 20121230 -9606 100288425 LOC100288425 - - - 1 1p34.3 eukaryotic translation initiation factor 1 pseudogene pseudo - - - - 20121230 -9606 100288428 LMCD1-AS1 - - HGNC:44477 3 3p26.1 LMCD1 antisense RNA 1 (head to head) miscRNA LMCD1-AS1 LMCD1 antisense RNA 1 (head to head) O - 20121230 -9606 100288430 LOC100288430 - - - 4 4p16.1 uncharacterized LOC100288430 pseudo - - - - 20121209 -9606 100288432 LOC100288432 - - - 21 21q22.11 uncharacterized LOC100288432 miscRNA - - - - 20121230 -9606 100288433 LOC100288433 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121222 -9606 100288435 DYZ1L18 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100288436 LOC100288436 - - - 9 9p21.1 solute carrier family 4 (anion exchanger), member 1, adaptor protein pseudogene pseudo - - - - 20121230 -9606 100288437 LOC100288437 - - - 9 9q31.2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 100288440 COX5BP5 - COX5BL5 HGNC:2274 12 12q13.12 cytochrome c oxidase subunit Vb pseudogene 5 pseudo COX5BP5 cytochrome c oxidase subunit Vb pseudogene 5 O - 20121230 -9606 100288443 LOC100288443 - - - 2 2q14.3 uncharacterized LOC100288443 unknown - - - - 20120622 -9606 100288451 RBBP4P5 - - HGNC:42372 14 14q11.2 retinoblastoma binding protein 4 pseudogene 5 pseudo RBBP4P5 retinoblastoma binding protein 4 pseudogene 5 O - 20121230 -9606 100288463 LOC100288463 - - - 5 5q23.2 cullin 1 pseudogene pseudo - - - - 20121230 -9606 100288465 FAM197Y10 - - HGNC:37627 Y Yq11.223 family with sequence similarity 197, Y-linked, member 10 protein-coding FAM197Y10 family with sequence similarity 197, Y-linked, member 10 O - 20121110 -9606 100288466 LOC100288466 - - - Un - double homeobox protein 4-like pseudo - - - - 20121209 -9606 100288468 DYZ1L21 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288470 REXO1L11P - - HGNC:44434 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 11, pseudogene pseudo REXO1L11P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 11, pseudogene O - 20121230 -9606 100288482 LOC100288482 - - - 15 15q13.2 uncharacterized LOC100288482 pseudo - - - - 20121230 -9606 100288483 HSBP1P2 - - HGNC:37300 4 4q25 heat shock factor binding protein 1 pseudogene 2 pseudo HSBP1P2 heat shock factor binding protein 1 pseudogene 2 O - 20121230 -9606 100288484 LOC100288484 - - - 5 5q32 formyl peptide receptor 1 pseudogene pseudo - - - - 20121230 -9606 100288485 MTRNR2L7 - HN7 HGNC:37164|Ensembl:ENSG00000256892 10 10p11.21 MT-RNR2-like 7 protein-coding MTRNR2L7 MT-RNR2-like 7 O MT-RNR2-like protein 7|MTRNR2-like 7|humanin 7|humanin-like protein 7 20121230 -9606 100288486 DDX11L9 - - HGNC:37109 15 15q26.3 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9 pseudo DDX11L9 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9 O - 20121230 -9606 100288490 LOC100288490 - - - 19 19q13.43 uncharacterized LOC100288490 unknown - - - - 20120511 -9606 100288493 TCEB1P5 - - HGNC:38140 Y Yq11.223 transcription elongation factor B (SIII), polypeptide 1 pseudogene 5 pseudo TCEB1P5 transcription elongation factor B (SIII), polypeptide 1 pseudogene 5 O - 20121230 -9606 100288494 LOC100288494 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121222 -9606 100288496 LOC100288496 - MUC-B1 - 7 7p22.3 uncharacterized LOC100288496 pseudo - - - - 20121102 -9606 100288499 DYZ1L22 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288500 REXO1L10P - - HGNC:44433 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 10, pseudogene pseudo REXO1L10P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 10, pseudogene O - 20121209 -9606 100288503 LOC100288503 - - - 2 2q12.3 chromosome 1 open reading frame 212 pseudogene pseudo - - - - 20121230 -9606 100288504 LOC100288504 - - - 2 2q14.3 uncharacterized LOC100288504 unknown - - - - 20121102 -9606 100288506 PNPT1P1 - - HGNC:44468 3 3p26.1 polyribonucleotide nucleotidyltransferase 1 pseudogene 1 pseudo PNPT1P1 polyribonucleotide nucleotidyltransferase 1 pseudogene 1 O - 20121230 -9606 100288510 LOC100288510 - - - 5 5q11.2 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100288513 LOC100288513 - - - 6 6q15 tubulin, beta 3 pseudogene pseudo - - - - 20121230 -9606 100288517 ISCA1P2 - - HGNC:38023 1 1q42.13 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 2 pseudo ISCA1P2 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100288520 USP17L15 - - HGNC:44443 4 4p16.1 ubiquitin specific peptidase 17-like family member 15 protein-coding USP17L15 ubiquitin specific peptidase 17-like family member 15 O ubiquitin carboxyl-terminal hydrolase 17-like 20121230 -9606 100288523 LOC100288523 - - - Un - double homeobox protein 4-like pseudo - - - - 20121209 -9606 100288524 LOC100288524 - - - 7 7p22.3 forkhead box L1-like protein-coding - - - - 20121230 -9606 100288526 DYZ1L24 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288527 REXO1L2P - - HGNC:32239 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo REXO1L2P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) O - 20121209 -9606 100288533 LOC100288533 - - - 2 2q14.3 ribosomal protein L14 pseudogene pseudo - - - - 20121230 -9606 100288540 POM121B - - HGNC:34004 7 7q11.23 POM121 transmembrane nucleoporin B (pseudogene) pseudo POM121B POM121 transmembrane nucleoporin B (pseudogene) O - 20121230 -9606 100288542 LOC100288542 - - - 9 9q32 chromosome 14 open reading frame 119 pseudogene pseudo - - - - 20121230 -9606 100288543 FOLR3P1 - - HGNC:38074 11 11q13.4 folate receptor 3 (gamma) pseudogene 1 pseudo FOLR3P1 folate receptor 3 (gamma) pseudogene 1 O - 20121230 -9606 100288557 LOC100288557 - - - Un - double homeobox protein 4-like pseudo - - - - 20121209 -9606 100288558 LOC100288558 - - - 6 6q24.2 chromosome 4 open reading frame 46 pseudogene pseudo - - - - 20121230 -9606 100288560 LOC100288560 - - - X Xp11.22 mitochondrial ribosomal protein S18C pseudogene pseudo - - - - 20121230 -9606 100288561 DYZ1L25 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288562 LOC100288562 - - - 8 8q21.2 exonuclease GOR-like protein-coding - - - - 20121209 -9606 100288563 HMGB3P23 - - HGNC:39315 9 9p21.1 high mobility group box 3 pseudogene 23 pseudo HMGB3P23 high mobility group box 3 pseudogene 23 O - 20121230 -9606 100288568 LOC100288568 - - - 14 14q32.33 uncharacterized LOC100288568 protein-coding - - - - 20121209 -9606 100288570 LOC100288570 - - - 2 2q13 glycosylphosphatidylinositol anchor attachment protein 1 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100288580 ACTR3P1 - - HGNC:31820 14 14q11.2 ARP3 actin-related protein 3 homolog (yeast) pseudogene 1 pseudo ACTR3P1 ARP3 actin-related protein 3 homolog (yeast) pseudogene 1 O - 20121230 -9606 100288584 CCDC34P1 - - HGNC:44008 4 4q25 coiled-coil domain containing 34 pseudogene 1 pseudo CCDC34P1 coiled-coil domain containing 34 pseudogene 1 O - 20121230 -9606 100288590 LOC100288590 - - - 21 21q22.13 cutaneous T-cell lymphoma-associated antigen 1 pseudogene pseudo - - - - 20121230 -9606 100288593 LOC100288593 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121222 -9606 100288594 LOC100288594 - - - 7 7p22.3 uncharacterized LOC100288594 unknown - - - - 20121230 -9606 100288595 DYZ1L26 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120511 -9606 100288596 LOC100288596 - - - 9 9p21.1 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100288610 LINC00268-2P - NCRNA00268-2P|NCRNA00268B HGNC:37771 Y Yq11.1 long intergenic non-protein coding RNA 268-2, pseudogene pseudo LINC00268-2P long intergenic non-protein coding RNA 268-2, pseudogene O - 20121230 -9606 100288613 UBE2NP1 - - HGNC:20337 14 14q11.2 ubiquitin-conjugating enzyme E2N pseudogene 1 pseudo UBE2NP1 ubiquitin-conjugating enzyme E2N pseudogene 1 O - 20121230 -9606 100288615 WHAMMP1 - WHDC1P1 HGNC:32361 15 15q13.3 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 1 pseudo WHAMMP1 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 1 O - 20121230 -9606 100288619 LOC100288619 - - - 10 10p15.3 uncharacterized LOC100288619 unknown - - - - 20121230 -9606 100288623 LOC100288623 - - - 19 19p12 zinc finger protein 93-like pseudo - - - - 20121230 -9606 100288627 LOC100288627 - - - Un - double homeobox protein 4-like pseudo - - - - 20121209 -9606 100288628 LOC100288628 - - - 6 6p11.2 SUMO1/sentrin specific peptidase 6 pseudogene pseudo - - - - 20121230 -9606 100288637 LOC100288637 - - - 15 15q13.2 OTU domain containing 7A pseudogene pseudo - - - - 20121230 -9606 100288644 LOC100288644 - - - 4 4q35.1 uncharacterized LOC100288644 unknown - - - - 20121017 -9606 100288646 LOC100288646 - - - 1 1p36.33 putative uncharacterized protein C20orf69-like protein-coding - - - - 20121209 -9606 100288654 LOC100288654 - - - 3 3p14.1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene pseudo - - - - 20121230 -9606 100288656 LOC100288656 - - - 5 5q35.3 ankyrin repeat domain 20 family, member A2 pseudogene pseudo - - - - 20121230 -9606 100288657 LOC100288657 - - - Un - double homeobox protein 4-like protein-coding - - - - 20121209 -9606 100288659 ZNF317P1 - - HGNC:31062 8 8q22.1 zinc finger protein 317 pseudogene 1 pseudo ZNF317P1 zinc finger protein 317 pseudogene 1 O - 20121230 -9606 100288661 SUB1P4 - - HGNC:43994 16 16p12.2 SUB1 homolog (S. cerevisiae) pseudogene 4 pseudo SUB1P4 SUB1 homolog (S. cerevisiae) pseudogene 4 O - 20121230 -9606 100288663 LOC100288663 - - - 2 2q34 actin related protein 2/3 complex, subunit 1A, 41kDa pseudogene pseudo - - - - 20121230 -9606 100288666 LOC100288666 - - - 8 8p11.21 ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 100288667 CICP7 - - HGNC:37756 1 1p36.33 capicua homolog (Drosophila) pseudogene 7 pseudo CICP7 capicua homolog (Drosophila) pseudogene 7 O - 20121209 -9606 100288669 LOC100288669 - - - 1 1p36.13 uncharacterized LOC100288669 pseudo - - - - 20121209 -9606 100288675 LOC100288675 - - - X Xq26.2 uncharacterized LOC100288675 protein-coding - - - - 20120710 -9606 100288683 LOC100288683 - - - 4 4p15.33 ribosomal protein L21 pseudogene pseudo - - - - 20121230 -9606 100288687 DUX4L - - - 10 - double homeobox 4-like miscRNA - - - - 20121230 -9606 100288690 LOC100288690 - - - 10 10q11.22 WASH complex subunit FAM21B-like pseudo - - - - 20121209 -9606 100288691 HMGN2P8 - AC022394.1|HMGN2L8 HGNC:31662 10 10q23.1 high mobility group nucleosomal binding domain 2 pseudogene 8 pseudo HMGN2P8 high mobility group nucleosomal binding domain 2 pseudogene 8 O - 20121230 -9606 100288695 LIMS3L - - HGNC:39941|Ensembl:ENSG00000256671|Vega:OTTHUMG00000169984 2 2q13 LIM and senescent cell antigen-like domains 3-like protein-coding LIMS3L LIM and senescent cell antigen-like domains 3-like O LIM and senescent cell antigen-like-containing domain protein 3-like|particularly interesting new Cys-His protein 3 20121230 -9606 100288702 ARL6IP1P1 - ARL6IPP1 HGNC:23178 14 14q11.2 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 1 pseudo ARL6IP1P1 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 1 O - 20121230 -9606 100288703 LOC100288703 - - - 1 1q42.2 peptidylprolyl isomerase A (cyclophilin A)-like 4C pseudogene pseudo - - - - 20121230 -9606 100288708 LOC100288708 - - - 1 1q21.2 myomegalin-like pseudo - - - - 20121209 -9606 100288711 LOC100288711 - - - Un - double homeobox 4 pseudogene pseudo - - - - 20121209 -9606 100288712 LOC100288712 - - - 7 7p22.1 S100 calcium binding protein A11 pseudogene pseudo - - - - 20121230 -9606 100288713 PMS2P10 - PMS2L10|PMSR4 HGNC:9124 7 7q11.23 postmeiotic segregation increased 2 pseudogene 10 pseudo PMS2P10 postmeiotic segregation increased 2 pseudogene 10 O - 20121230 -9606 100288721 LOC100288721 - - - 3 3q13.13 uncharacterized LOC100288721 unknown - - - - 20120511 -9606 100288724 LOC100288724 - - - 7 7q36.1 transient receptor potential cation channel, subfamily C, member 6 pseudogene pseudo - - - - 20121230 -9606 100288726 LOC100288726 - - - 12 12q24.32 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100288728 LOC100288728 - - - 17 17p13.3 uncharacterized LOC100288728 unknown - - - - 20121230 -9606 100288730 PAN3-AS1 - - HGNC:39932 13 13q12.2 PAN3 antisense RNA 1 miscRNA PAN3-AS1 PAN3 antisense RNA 1 O - 20121230 -9606 100288739 LOC100288739 - - - 5 5p15.33 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100288741 LOC100288741 - - - Un - retinoic acid receptor responder protein 2-like pseudo - - - - 20121209 -9606 100288742 HIST1H2BPS1 - H2BFVP|bA317E16.4 HGNC:18719 6 6p22.2 histone cluster 1, H2b, pseudogene 1 pseudo HIST1H2BPS1 histone cluster 1, H2b, pseudogene 1 O - 20121230 -9606 100288748 LOC100288748 - - - 8 8q22.1 uncharacterized LOC100288748 miscRNA - - - - 20121230 -9606 100288757 SUMO2P4 - - HGNC:39014 5 5q13.1 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 4 pseudo SUMO2P4 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 4 O - 20121230 -9606 100288763 LOC100288763 - - - 16 16q12.2 KIAA1191 pseudogene pseudo - - - - 20121230 -9606 100288771 LOC100288771 - - - 4 4p15.32 prefoldin subunit 1 pseudogene pseudo - - - - 20121230 -9606 100288772 CCT7P2 - CCT7-1P HGNC:35134 5 5q14.3 chaperonin containing TCP1, subunit 7 (eta) pseudogene 2 pseudo CCT7P2 chaperonin containing TCP1, subunit 7 (eta) pseudogene 2 O - 20121230 -9606 100288774 LOC100288774 - - - Un - angiogenic factor with G patch and FHA domains 1-like pseudo - - - - 20121209 -9606 100288778 LOC100288778 - - - 12 12p13.33 WAS protein family homolog 1 pseudogene pseudo - - - - 20121230 -9606 100288785 UQCRBP3 - - HGNC:39033 5 5p15.2 ubiquinol-cytochrome c reductase binding protein pseudogene 3 pseudo UQCRBP3 ubiquinol-cytochrome c reductase binding protein pseudogene 3 O - 20121230 -9606 100288788 LOC100288788 - - - X Xq12 RNA binding motif protein, X-linked-like 3 pseudogene pseudo - - - - 20121230 -9606 100288797 TMEM239 - - HGNC:40044|Ensembl:ENSG00000198326|Vega:OTTHUMG00000031713 20 20p13 transmembrane protein 239 protein-coding TMEM239 transmembrane protein 239 O - 20121230 -9606 100288798 LOC100288798 - - - 12 12q13.11 uncharacterized LOC100288798 unknown - - - - 20121230 -9606 100288801 FRG2C - - HGNC:33626|Ensembl:ENSG00000172969|Vega:OTTHUMG00000158963 3 3p12.3 FSHD region gene 2 family, member C protein-coding FRG2C FSHD region gene 2 family, member C O FSHD region gene 2 protein family member C|HSA3-FRG2|protein FRG2-like-2 20121230 -9606 100288802 LOC100288802 - - - 3 3q29 ribosomal protein L23a pseudogene pseudo - - - - 20121230 -9606 100288803 LOC100288803 - - - 5 5q35.3 F-box and WD repeat domain containing 2 pseudogene pseudo - - - - 20121230 -9606 100288805 HYDIN2 - HYDINP1 HGNC:33129|MIM:610813 1 1q21.1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo HYDIN2 HYDIN2, axonemal central pair apparatus protein (pseudogene) O - 20121230 -9606 100288806 LOC100288806 - - - Un - cell division cycle protein 27 homolog pseudo - - - - 20121209 -9606 100288807 LOC100288807 - - - 7 7q11.23 putative speedy protein-like protein 2-like protein-coding - - - - 20121209 -9606 100288814 LOC100288814 - - - X Xp22.2 uncharacterized LOC100288814 protein-coding - - - uncharacterized protein LOC100288814 20121230 -9606 100288825 TTC39CP1 - - HGNC:44019 4 4q26 tetratricopeptide repeat domain 39C pseudogene 1 pseudo TTC39CP1 tetratricopeptide repeat domain 39C pseudogene 1 O - 20121230 -9606 100288827 CYP4F25P - - HGNC:39949 9 9q21.11 cytochrome P450, family 4, subfamily F, polypeptide 25, pseudogene pseudo CYP4F25P cytochrome P450, family 4, subfamily F, polypeptide 25, pseudogene O - 20121230 -9606 100288831 SRGAP3-AS3 - - HGNC:40900 3 3p25.3 SRGAP3 antisense RNA 3 protein-coding SRGAP3-AS3 SRGAP3 antisense RNA 3 O SRGAP3 antisense RNA 3 (non-protein coding) 20121230 -9606 100288841 RBPJP5 - - HGNC:37485 9 9p12 RBPJ pseudogene 5 pseudo RBPJP5 RBPJ pseudogene 5 O - 20121209 -9606 100288842 LOC100288842 - - - 9 9q33.2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 pseudogene pseudo - - - - 20121230 -9606 100288843 LOC100288843 - - - 10 10q23.31 N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene pseudo - - - - 20121230 -9606 100288844 LOC100288844 - - - 11 11p14.3 zinc finger protein 133-like pseudo - - - - 20121230 -9606 100288846 LOC100288846 - - - 14 14q21.1 uncharacterized LOC100288846 miscRNA - - - - 20121230 -9606 100288853 LOC100288853 - - - X Xq12 poly(A) binding protein, nuclear 1 pseudogene pseudo - - - - 20121230 -9606 100288860 LOC100288860 - - - 19 19q13.11 uncharacterized LOC100288860 unknown - - - - 20120511 -9606 100288861 TRMT112P1 - - HGNC:44020 4 4q26 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 1 pseudo TRMT112P1 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100288864 LOC100288864 - - - 15 15q26.1 uncharacterized LOC100288864 unknown - - - - 20121017 -9606 100288866 LOC100288866 - - - 17 17q21.33 uncharacterized LOC100288866 miscRNA - - - - 20121230 -9606 100288868 LOC100288868 - - - 4 4p15.31 keratin 18 pseudogene pseudo - - - - 20121230 -9606 100288869 LOC100288869 - - - 20 20q11.23 uncharacterized LOC100288869 unknown - - - - 20120710 -9606 100288870 ERLEC1P1 - - HGNC:38012 21 21q11.2 endoplasmic reticulum lectin 1 pseudogene 1 pseudo ERLEC1P1 endoplasmic reticulum lectin 1 pseudogene 1 O - 20121230 -9606 100288884 LOC100288884 - - - 21 21p11.2 uncharacterized LOC100288884 unknown - - - - 20120622 -9606 100288885 LOC100288885 - - - 4 4q23 dynein, light chain, LC8-type 1 pseudogene pseudo - - - - 20121230 -9606 100288892 COX6CP4 - - HGNC:32374 15 15q14 cytochrome c oxidase subunit VIc pseudogene 4 pseudo COX6CP4 cytochrome c oxidase subunit VIc pseudogene 4 O - 20121230 -9606 100288893 LOC100288893 - - - 2 2p25.3 uncharacterized LOC100288893 unknown - - - - 20120622 -9606 100288897 LOC100288897 - - - 2 2q21.1 fatty acyl-CoA reductase 2-like pseudo - - - - 20121209 -9606 100288903 LOC100288903 - - - Un - zinc finger protein 717-like pseudo - - - - 20121209 -9606 100288904 CICP11 - - HGNC:37903 7 7p11.2 capicua homolog (Drosophila) pseudogene 11 pseudo CICP11 capicua homolog (Drosophila) pseudogene 11 O - 20121230 -9606 100288908 LOC100288908 - - - 11 11p15.4 PRO2898 protein-coding - - - - 20120710 -9606 100288910 LOC100288910 - - - 14 14q21.3 uncharacterized LOC100288910 unknown - - - - 20120710 -9606 100288911 LOC100288911 - - - 2 2p22.3 uncharacterized LOC100288911 miscRNA - - - - 20121230 -9606 100288914 LOC100288914 - - - 4 4q24 mannosidase, beta A, lysosomal-like pseudogene pseudo - - - - 20121230 -9606 100288929 LOC100288929 - - - Un - coxsackievirus and adenovirus receptor-like pseudo - - - - 20121209 -9606 100288935 LOC100288935 - - - 11 11p15.4 chromosome 11 open reading frame 10 pseudogene pseudo - - - - 20121230 -9606 100288948 BRD7P1 - BRD7P HGNC:19923 14 14q11.2 bromodomain containing 7 pseudogene 1 pseudo BRD7P1 bromodomain containing 7 pseudogene 1 O - 20121230 -9606 100288950 MTND1P25 - - HGNC:42091 1 1q43 MT-ND1 pseudogene 25 pseudo MTND1P25 MT-ND1 pseudogene 25 O - 20121230 -9606 100288960 PRSS43 - TESSP3 HGNC:37323 3 3p21.31 protease, serine, 43 protein-coding PRSS43 protease, serine, 43 O - 20121216 -9606 100288962 LOC100288962 - - - 4 4p15.2 S-phase kinase-associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100288964 FABP5P5 - FABP5L5 HGNC:31068 5 5q15 fatty acid binding protein 5 pseudogene 5 pseudo FABP5P5 fatty acid binding protein 5 pseudogene 5 O - 20121230 -9606 100288966 LOC100288966 - - - 21|Un - POTE ankyrin domain family member D-like protein-coding - - - uncharacterized protein LOC100288966 20121230 -9606 100288971 LOC100288971 - - - 8 8q22.3 acireductone dioxygenase 1 pseudogene pseudo - - - - 20121230 -9606 100288974 LOC100288974 hCG_1993574 - - 10 10q22.3 BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo - - - - 20121230 -9606 100288978 LOC100288978 - - - 14 14q22.1 myeloma overexpressed 2 pseudogene pseudo - - - - 20121230 -9606 100288979 DCAF13P2 - - HGNC:43867 5 5p15.1 DDB1 and CUL4 associated factor 13 pseudogene 2 pseudo DCAF13P2 DDB1 and CUL4 associated factor 13 pseudogene 2 O - 20121230 -9606 100288984 MTND1P3 - - HGNC:42052 7 7q34 MT-ND1 pseudogene 3 pseudo MTND1P3 MT-ND1 pseudogene 3 O - 20121230 -9606 100288998 MTND1P15 - - HGNC:42064 17 17p11.2 MT-ND1 pseudogene 15 pseudo MTND1P15 MT-ND1 pseudogene 15 O - 20121230 -9606 100289004 LOC100289004 - - - Un - actin-related protein 3B-like pseudo - - - - 20121209 -9606 100289009 LOC100289009 - - - 11 11p13 uncharacterized LOC100289009 protein-coding - - - - 20120710 -9606 100289017 MOXD2P - MOXD2 HGNC:33605 7 7q34 monooxygenase, DBH-like 2, pseudogene pseudo MOXD2P monooxygenase, DBH-like 2, pseudogene O - 20121230 -9606 100289019 LOC100289019 - - - 9 9q34.11 uncharacterized LOC100289019 miscRNA - - - - 20121230 -9606 100289026 LOC100289026 - - - Un - coiled-coil domain-containing protein 29-like pseudo - - - - 20121209 -9606 100289027 CDK2AP2P1 - - HGNC:38492 9 9p11.2 cyclin-dependent kinase 2 associated protein 2 pseudogene 1 pseudo CDK2AP2P1 cyclin-dependent kinase 2 associated protein 2 pseudogene 1 O - 20121230 -9606 100289028 BNIP3P4 - - HGNC:39657 9 9q21.11 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 4 pseudo BNIP3P4 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 4 O - 20121230 -9606 100289034 LOC100289034 - - - 2 2q37.3 ribosomal protein L23a pseudogene pseudo - - - - 20121230 -9606 100289037 LOC100289037 - - - 5 5q15 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100289038 LOC100289038 - - - Un - von Willebrand factor-like pseudo - - - - 20121209 -9606 100289045 LOC100289045 - - - 5 5q13.2 uncharacterized LOC100289045 unknown - - - - 20120710 -9606 100289047 LOC100289047 - - - 8 8p21.2 dnaJ homolog subfamily B member 6-like pseudo - - - - 20121209 -9606 100289051 CYB5AP5 - CYB5P5 HGNC:2576 14 14q12 cytochrome b5 type A (microsomal) pseudogene 5 pseudo CYB5AP5 cytochrome b5 type A (microsomal) pseudogene 5 O - 20121230 -9606 100289055 LOC100289055 - - - Un - uncharacterized LOC100289055 pseudo - - - - 20121209 -9606 100289058 LOC100289058 - - - 13 13q14.11 uncharacterized LOC100289058 protein-coding - - - - 20120710 -9606 100289059 LOC100289059 - - - 15 15q11.2 chromosome 9 open reading frame 123 pseudogene pseudo - - - - 20121230 -9606 100289060 LOC100289060 - - - 15 15q21.3 guanine nucleotide binding protein (G protein), gamma 10 pseudogene pseudo - - - - 20121230 -9606 100289061 LOC100289061 - - - 1 1q21.3 uncharacterized LOC100289061 miscRNA - - - - 20120511 -9606 100289079 LOC100289079 - - - 1 - 60S ribosomal protein L36-like protein-coding - - - - 20121209 -9606 100289085 LOC100289085 - - - Un - protein fem-1 homolog A-like pseudo - - - - 20121209 -9606 100289087 TSPY10 - - HGNC:37473|Ensembl:ENSG00000236424|Vega:OTTHUMG00000041524 Y Yp11.2 testis specific protein, Y-linked 10 protein-coding TSPY10 testis specific protein, Y-linked 10 O Testis-specific Y-encoded protein 10 20121230 -9606 100289090 LOC100289090 - - - 15 15q15.1 uncharacterized LOC100289090 unknown - - - - 20121230 -9606 100289091 LOC100289091 - - - 15 15q21.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2 pseudogene pseudo - - - - 20121230 -9606 100289092 LOC100289092 - - - 16 16p11.2 uncharacterized LOC100289092 miscRNA - - - - 20121230 -9606 100289094 LOC100289094 - - - 2 2q37.3 uncharacterized LOC100289094 unknown - - - - 20120511 -9606 100289095 LOC100289095 - - - 3 3q22.1 BCL2-like 12 (proline rich) pseudogene pseudo - - - - 20121230 -9606 100289097 LOC100289097 - - - 2 - protein FRG1-like protein-coding - - - protein FRG1B-like 20121209 -9606 100289098 LOC100289098 - - - 7 7q11.21 uncharacterized LOC100289098 miscRNA - - - - 20121209 -9606 100289099 LOC100289099 - - - 8 8q23.3 ribosomal protein L30 pseudogene pseudo - - - - 20121230 -9606 100289102 EIF4A1P8 RP11-360G10.3 - HGNC:37927 10 10q23.32 eukaryotic translation initiation factor 4A1 pseudogene 8 pseudo EIF4A1P8 eukaryotic translation initiation factor 4A1 pseudogene 8 O - 20121230 -9606 100289117 LOC100289117 - - - 2 2q36.1 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene pseudo - - - - 20121230 -9606 100289118 LOC100289118 - - - 3 3q22.3 mitochondrial carrier 2 pseudogene pseudo - - - - 20121230 -9606 100289120 LOC100289120 RP11-274K13.2 - - X Xq26.3 uncharacterized LOC100289120 unknown - - - - 20120511 -9606 100289121 LOC100289121 - - - Un - coxsackievirus and adenovirus receptor-like pseudo - - - - 20121209 -9606 100289124 FAM27E2 - - HGNC:32013 9 9p11.2 family with sequence similarity 27, member E2 unknown FAM27E2 family with sequence similarity 27, member E2 O - 20121230 -9606 100289131 LOC100289131 - - - 3 3p13 cytochrome c oxidase subunit VIc pseudogene pseudo - - - - 20121230 -9606 100289133 KRT8P32 - - HGNC:39866 5 5q15 keratin 8 pseudogene 32 pseudo KRT8P32 keratin 8 pseudogene 32 O - 20121230 -9606 100289137 LOC100289137 - - - 9 9p13.1 uncharacterized LOC100289137 miscRNA - - - - 20121230 -9606 100289141 LOC100289141 - - - 5 5p15.1 H3 histone, family 3B (H3.3B) pseudogene pseudo - - - - 20121230 -9606 100289143 LOC100289143 - - - 12 12q21.2 NOP10 ribonucleoprotein homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100289144 LOC100289144 - - - 1 1q21.1 uncharacterized LOC100289144 pseudo - - - - 20121209 -9606 100289150 FAM197Y5 - - HGNC:37467 Y Yp11.2 family with sequence similarity 197, Y-linked, member 5 miscRNA FAM197Y5 family with sequence similarity 197, Y-linked, member 5 O - 20121209 -9606 100289151 DCLRE1CP1 - - HGNC:44877 10 10p13 DNA cross-link repair 1C pseudogene 1 protein-coding DCLRE1CP1 DNA cross-link repair 1C pseudogene 1 O - 20121213 -9606 100289158 HMGB3P13 - - HGNC:39305 3 3q22.2 high mobility group box 3 pseudogene 13 pseudo HMGB3P13 high mobility group box 3 pseudogene 13 O - 20121230 -9606 100289161 LOC100289161 - - - Un - uncharacterized LOC100289161 pseudo - - - - 20121209 -9606 100289170 COX20P2 - - HGNC:43772 2 2q37.1 COX20 Cox2 chaperone homolog (S. cerevisiae) pseudogene 2 pseudo COX20P2 COX20 Cox2 chaperone homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100289178 GNG12-AS1 - - HGNC:43938 1 1p31.3 GNG12 antisense RNA 1 miscRNA GNG12-AS1 GNG12 antisense RNA 1 O - 20121230 -9606 100289184 LOC100289184 - - - X Xq26.3 ribosomal protein L22 pseudogene pseudo - - - - 20121230 -9606 100289185 LOC100289185 - - - Un - telomeric repeat-binding factor 1-like pseudo - - - - 20121209 -9606 100289186 SDHDP1 - - HGNC:10684 18 18p11.21 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 1 pseudo SDHDP1 succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 1 O - 20121230 -9606 100289187 LOC100289187 - - - 7 7q22.1 transmembrane protein 225-like protein-coding - - - - 20121230 -9606 100289188 FAM197Y4 - - HGNC:37466 Y Yp11.2 family with sequence similarity 197, Y-linked, member 4 protein-coding FAM197Y4 family with sequence similarity 197, Y-linked, member 4 O - 20121209 -9606 100289191 HMGN3P1 - - HGNC:39206 1 1q21.3 high mobility group nucleosomal binding domain 3 pseudogene 1 pseudo HMGN3P1 high mobility group nucleosomal binding domain 3 pseudogene 1 O - 20121230 -9606 100289193 LOC100289193 - - - 4 4q13.1 ubiquitin-conjugating enzyme E2L 3 pseudogene pseudo - - - - 20121230 -9606 100289194 LOC100289194 - - - 22|Un - uncharacterized LOC100289194 pseudo - - - - 20121209 -9606 100289196 LOC100289196 - - - 7 7p11.2 chromosome 7 open reading frame 73 pseudogene pseudo - - - - 20121230 -9606 100289197 LOC100289197 - - - 7 7q11.22 prefoldin subunit 4-like pseudo - - - - 20121209 -9606 100289206 LOC100289206 - - - X Xq13.1 uncharacterized LOC100289206 pseudo - - - - 20121209 -9606 100289207 LOC100289207 - - - 8 8p12 mitogen-activated protein kinase kinase 1 pseudogene pseudo - - - - 20121230 -9606 100289211 LINC00624 - - HGNC:44254 1 1q21.1 long intergenic non-protein coding RNA 624 miscRNA LINC00624 long intergenic non-protein coding RNA 624 O - 20121230 -9606 100289220 LTV1P1 - - HGNC:44049 4 4q27 LTV1 homolog (S. cerevisiae) pseudogene 1 pseudo LTV1P1 LTV1 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100289230 LOC100289230 - - - 5 5q21.1 uncharacterized LOC100289230 miscRNA - - - - 20121230 -9606 100289237 LOC100289237 - - - 10 10q11.21 centrosomal protein 164kDa pseudogene pseudo - - - - 20121230 -9606 100289238 LOC100289238 - - - 10 10q23.31 zinc finger RNA binding protein pseudogene pseudo - - - - 20121230 -9606 100289244 LOC100289244 - - - 5 5q14.3 peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 100289248 LOC100289248 - - - 4 - uncharacterized LOC100289248 pseudo - - - - 20121102 -9606 100289252 FAM108A3P - C1orf47|FAM108A11P|FAM108A2|FAM108A3 HGNC:33538 1 1q21.1 family with sequence similarity 108, member A2 pseudo FAM108A3P family with sequence similarity 108, member A3, pseudogene O - 20121209 -9606 100289255 LINC00675 - - HGNC:44356 17 17p13.1-p12 long intergenic non-protein coding RNA 675 miscRNA LINC00675 long intergenic non-protein coding RNA 675 O - 20121230 -9606 100289259 ZFYVE9P1 - - HGNC:33359 X Xq26.3 zinc finger, FYVE domain containing 9 pseudogene 1 pseudo ZFYVE9P1 zinc finger, FYVE domain containing 9 pseudogene 1 O - 20121230 -9606 100289260 LOC100289260 - - - Un - calponin-2-like pseudo - - - - 20121209 -9606 100289264 LOC100289264 - - - 7 7q22.1 ribosomal protein L7 pseudogene pseudo - - - - 20121230 -9606 100289265 FAM197Y1 - - HGNC:37464 Y Yp11.2 family with sequence similarity 197, Y-linked, member 1 protein-coding FAM197Y1 family with sequence similarity 197, Y-linked, member 1 O - 20121209 -9606 100289269 LOC100289269 - - - 19 19p12 uncharacterized LOC100289269 protein-coding - - - - 20121018 -9606 100289274 DNAJC3-AS1 - - HGNC:39808 13 13q32.1 DNAJC3 antisense RNA 1 (head to head) miscRNA DNAJC3-AS1 DNAJC3 antisense RNA 1 (head to head) O - 20121209 -9606 100289279 ATP5A1P9 - - HGNC:37667 9 9p13.1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 9 pseudo ATP5A1P9 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 9 O - 20121209 -9606 100289280 LOC100289280 - - - 10 10q11.21 cubilin-like pseudo - - - - 20121209 -9606 100289283 LOC100289283 - - - 16 16p11.2 uncharacterized LOC100289283 unknown - - - - 20121230 -9606 100289286 LOC100289286 - - - 6 6p22.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100289290 LOC100289290 - - - 16 16p11.2 Ig heavy chain V-III region VH26-like other - - - - 20121209 -9606 100289295 NUPL1P1 - - HGNC:44052 4 4q28.1 nucleoporin like 1 pseudogene 1 pseudo NUPL1P1 nucleoporin like 1 pseudogene 1 O - 20121230 -9606 100289300 HIGD1AP5 - - HGNC:42999 11 11p15.1 HIG1 hypoxia inducible domain family, member 1A pseudogene 5 pseudo HIGD1AP5 HIG1 hypoxia inducible domain family, member 1A pseudogene 5 O - 20121230 -9606 100289303 LOC100289303 - - - 15 15q26.2 tubulin, alpha 1b pseudogene pseudo - - - - 20121230 -9606 100289308 LOC100289308 - - - 20 20p11.21 uncharacterized LOC100289308 unknown - - - - 20121230 -9606 100289315 LOC100289315 - - - 2 2p16.3 NME/NM23 nucleoside diphosphate kinase 2 pseudogene pseudo - - - - 20121230 -9606 100289319 KRT8P43 - - HGNC:39877 6 6p22.3 keratin 8 pseudogene 43 pseudo KRT8P43 keratin 8 pseudogene 43 O - 20121230 -9606 100289320 LOC100289320 - - - 9 9q21.13 NME1-NME2 readthrough pseudogene pseudo - - - - 20121230 -9606 100289328 LOC100289328 - - - Un - glucoside xylosyltransferase 1-like pseudo - - - - 20121209 -9606 100289333 LOC100289333 - - - 19 19p13.2 uncharacterized LOC100289333 miscRNA - - - - 20121017 -9606 100289341 LOC100289341 hCG_2022304 - - 9 9q34.3 uncharacterized LOC100289341 miscRNA - - - - 20121230 -9606 100289346 LOC100289346 - - - 3 3p24.1 uncharacterized LOC100289346 pseudo - - - - 20121209 -9606 100289347 LOC100289347 - - - 5 5q14.3 uncharacterized LOC100289347 unknown - - - - 20120511 -9606 100289350 LOC100289350 - - - 2 2p11.1 immunoglobulin superfamily, member 3 pseudogene pseudo - - - - 20121230 -9606 100289351 LOC100289351 - - - 9 9q21.13 ribosomal protein S12 pseudogene pseudo - - - - 20121230 -9606 100289360 LOC100289360 - - - 2 2q37.1 HIG1 hypoxia inducible domain family, member 2A pseudogene pseudo - - - - 20121230 -9606 100289361 LOC100289361 - - - 3 3q23 uncharacterized LOC100289361 miscRNA - - - - 20121230 -9606 100289363 LOC100289363 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100289371 LOC100289371 - - - 5 5q21.1 mitochondrially encoded cytochrome c oxidase III pseudogene pseudo - - - - 20121230 -9606 100289373 UBAC2-AS1 - - HGNC:42502 13 13q32.3 UBAC2 antisense RNA 1 miscRNA UBAC2-AS1 UBAC2 antisense RNA 1 O - 20121230 -9606 100289375 LOC100289375 - - - 20 20p11.1 protein FAM27E2-like protein-coding - - - - 20121209 -9606 100289380 PTP4A1P5 - - HGNC:41932 X Xp21.3 protein tyrosine phosphatase type IVA, member 1 pseudogene 5 pseudo PTP4A1P5 protein tyrosine phosphatase type IVA, member 1 pseudogene 5 O - 20121230 -9606 100289381 LOC100289381 - - - 6 6p22.3 adaptor-related protein complex 3, sigma 1 subunit pseudogene pseudo - - - - 20121230 -9606 100289383 LOC100289383 - - - 16 16q24.3 capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100289388 LOC100289388 - - - 11 11q14.1 uncharacterized LOC100289388 miscRNA - - - - 20121230 -9606 100289404 LOC100289404 - - - 5 5q21.1 mitochondrially encoded cytochrome c oxidase II pseudogene pseudo - - - - 20121230 -9606 100289409 LOC100289409 - - - 9 9q34.3 uncharacterized LOC100289409 unknown - - - - 20120511 -9606 100289410 MCF2L-AS1 hCG_1774568 - HGNC:39825 13 13q34 MCF2L antisense RNA 1 miscRNA MCF2L-AS1 MCF2L antisense RNA 1 O - 20121230 -9606 100289414 PHBP9 - - HGNC:39288 10 10q24.31 prohibitin pseudogene 9 pseudo PHBP9 prohibitin pseudogene 9 O - 20121230 -9606 100289416 LOC100289416 - - - 11 11q22.1 zinc finger protein 793 pseudo - - - - 20121230 -9606 100289419 LOC100289419 - - - 16 16p11.2 cardiotrophin-2-like pseudo - - - - 20121209 -9606 100289424 LOC100289424 - - - 10 10q26.3 uncharacterized LOC100289424 unknown - - - - 20121230 -9606 100289435 LOC100289435 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100289442 LOC100289442 - - - 3 3q23 PHD finger protein 5A pseudogene pseudo - - - - 20121230 -9606 100289448 REXO1L12P - - HGNC:44435 8 8q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 12, pseudogene pseudo REXO1L12P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 12, pseudogene O - 20121209 -9606 100289450 SLC7A15P - ARPAT HGNC:32724 2 2p24.1 solute carrier family 7, member 15, pseudogene pseudo SLC7A15P solute carrier family 7, member 15, pseudogene O - 20121230 -9606 100289455 LOC100289455 - - - 10 10p12.2 uncharacterized LOC100289455 unknown - - - - 20121230 -9606 100289462 DEFB4B - DEFB4P HGNC:30193|Ensembl:ENSG00000177257|Vega:OTTHUMG00000143857 8 8p23.1 defensin, beta 4B protein-coding DEFB4B defensin, beta 4B O beta-defensin 4B|defensin, beta 4, pseudogene 20121230 -9606 100289470 LOC100289470 - - - 5 5q35.3 chromosome 5 open reading frame 60 pseudogene pseudo - - - - 20121230 -9606 100289473 LOC100289473 - - - 20 20p13 cytoskeleton associated protein 2-like pseudogene pseudo - - - - 20121230 -9606 100289475 LDHBP1 - LDHBL1 HGNC:6542 13 13q34 lactate dehydrogenase B pseudogene 1 pseudo LDHBP1 lactate dehydrogenase B pseudogene 1 O - 20121230 -9606 100289479 LOC100289479 - - - 2 2q31.1 cytochrome c oxidase subunit VIIb pseudogene pseudo - - - - 20121230 -9606 100289489 MINOS1P2 - - HGNC:44092 17 17q24.1 mitochondrial inner membrane organizing system 1 pseudogene 2 pseudo MINOS1P2 mitochondrial inner membrane organizing system 1 pseudogene 2 O - 20121230 -9606 100289495 LOC100289495 hCG_2029702 - - 6 6q27 uncharacterized LOC100289495 miscRNA - - - - 20121230 -9606 100289500 LOC100289500 - - - 1 1p22.1 zinc finger, AN1-type domain 1 pseudogene pseudo - - - - 20121230 -9606 100289501 FTLP11 - - HGNC:37960 15 15q13.1 ferritin, light polypeptide pseudogene 11 pseudo FTLP11 ferritin, light polypeptide pseudogene 11 O - 20121230 -9606 100289509 LOC100289509 - - - 10 10q24.32 uncharacterized LOC100289509 miscRNA - - - - 20121230 -9606 100289511 LOC100289511 - - - 14 14q24.2 uncharacterized LOC100289511 miscRNA - - - - 20121230 -9606 100289518 LOC100289518 - - - 11 11q14.2 immunoglobin superfamily, member 21 pseudogene pseudo - - - - 20121230 -9606 100289533 LOC100289533 - - - 18 18q11.2 uncharacterized LOC100289533 unknown - - - - 20120511 -9606 100289543 LOC100289543 - - - 15 15q13.3 uncharacterized LOC100289543 pseudo - - - - 20121230 -9606 100289545 HIST1H3PS1 - H3F3AP1|dJ45P21.6 HGNC:18982 6 6p22.1 histone cluster 1, H3, pseudogene 1 pseudo HIST1H3PS1 histone cluster 1, H3, pseudogene 1 O - 20121230 -9606 100289561 LOC100289561 - - - 7 7q22.1 uncharacterized LOC100289561 protein-coding - - - uncharacterized protein LOC100289561 20121230 -9606 100289564 LOC100289564 - - - 15 15q26.3 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100289568 LOC100289568 - - - 4 4q13.2 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus pseudogene pseudo - - - - 20121230 -9606 100289569 LOC100289569 - - - 5 5q21.3 zinc finger protein 736 pseudogene pseudo - - - - 20121230 -9606 100289574 LOC100289574 - - - 16 16p11.2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene pseudo - - - - 20121230 -9606 100289579 LOC100289579 - - - 6 6q14.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa pseudogene pseudo - - - - 20121230 -9606 100289580 LOC100289580 hCG_2045214 - - 16 16q24.3 uncharacterized LOC100289580 miscRNA - - - - 20121230 -9606 100289581 DUX4L13 XX-2136C48.4 - HGNC:38672 10 10q26.3 double homeobox 4 like 13 pseudo DUX4L13 double homeobox 4 like 13 O - 20121230 -9606 100289584 LOC100289584 - - - 1 1q32.1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100289585 LOC100289585 - - - 2 2p13.2 proliferation-inducing protein 25 unknown - - - - 20120511 -9606 100289604 LOC100289604 - - - 7 7q35 CTAGE family, member 4 pseudogene pseudo - - - - 20121230 -9606 100289605 HIGD1AP15 - - HGNC:43010 20 20p12.2 HIG1 hypoxia inducible domain family, member 1A pseudogene 15 pseudo HIGD1AP15 HIG1 hypoxia inducible domain family, member 1A pseudogene 15 O - 20121230 -9606 100289607 LOC100289607 - - - 9 9q22.31 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100289619 TRIAP1P1 - C10orf135|bA748L13.4 HGNC:31659 10 10p12.1 TP53 regulated inhibitor of apoptosis 1 pseudogene 1 pseudo TRIAP1P1 TP53 regulated inhibitor of apoptosis 1 pseudogene 1 O - 20121230 -9606 100289623 LOC100289623 - - - 2 2q22.2 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo - - - - 20121230 -9606 100289635 ZNF605 - - HGNC:28068|Ensembl:ENSG00000196458|Vega:OTTHUMG00000167934 12 12q24.33 zinc finger protein 605 protein-coding ZNF605 zinc finger protein 605 O - 20121230 -9606 100289637 LOC100289637 - - - 15 15q13.2 uncharacterized LOC100289637 unknown - - - - 20120909 -9606 100289640 PPATP1 - - HGNC:9239 3 3p12.1 phosphoribosyl pyrophosphate amidotransferase pseudogene 1 pseudo PPATP1 phosphoribosyl pyrophosphate amidotransferase pseudogene 1 O - 20121230 -9606 100289643 HSPA8P16 - - HGNC:44931 7 7q21.11 heat shock 70kDa protein 8 pseudogene 16 pseudo HSPA8P16 heat shock 70kDa protein 8 pseudogene 16 O - 20121230 -9606 100289644 LOC100289644 - - - 8 8q21.3 proline rich 13 pseudogene pseudo - - - - 20121230 -9606 100289650 LOC100289650 - - - 19 19q13.2 uncharacterized LOC100289650 miscRNA - - - - 20121230 -9606 100289656 LOC100289656 - - - 15 15q13.1 Dexi homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100289662 COX6B1P5 - - HGNC:37675 4 4p16.3 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 5 pseudo COX6B1P5 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 5 O - 20121230 -9606 100289663 STMN1P2 - - HGNC:44063 4 4q28.3 stathmin 1 pseudogene 2 pseudo STMN1P2 stathmin 1 pseudogene 2 O - 20121230 -9606 100289667 POLR3KP1 - - HGNC:39577 13 13q21.2 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 1 pseudo POLR3KP1 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 1 O - 20121230 -9606 100289673 LOC100289673 - - - 5 5q21.3 phosphoglycerate mutase family member 5 pseudogene pseudo - - - - 20121230 -9606 100289678 ZNF783 hCG_1640448 - HGNC:27222|Ensembl:ENSG00000204946|Vega:OTTHUMG00000158969 7 7q36.1 zinc finger family member 783 protein-coding - - - protein ZNF783 20121230 -9606 100289682 HMGN2P13 - - HGNC:33557 3 3q25.2 high mobility group nucleosomal binding domain 2 pseudogene 13 pseudo HMGN2P13 high mobility group nucleosomal binding domain 2 pseudogene 13 O - 20121230 -9606 100289683 ERVH-3 - HERV-H/F HGNC:39055 6 6q12 endogenous retrovirus group H, member 3 unknown ERVH-3 endogenous retrovirus group H, member 3 O - 20121017 -9606 100289897 LOC100289897 - - - 20 - protein FAM27E2-like pseudo - - - - 20121102 -9606 100290036 LOC100290036 - - - 14 - immunglobulin heavy chain variable region other - - - - 20120710 -9606 100290481 CYAT1 - - - 22 - immunoglobulin lambda light chain-like other - - - - 20120318 -9606 100290877 LOC100290877 - - - 2 - Ig kappa chain V-II region RPMI 6410-like other - - - - 20121102 -9606 100291105 LOC100291105 - - - 20 - uncharacterized LOC100291105 unknown - - - - 20121230 -9606 100291323 LOC100291323 - - - X - uncharacterized LOC100291323 protein-coding - - - - 20120710 -9606 100291626 LOC100291626 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100291628 LOC100291628 - - - 1 - penta-EF-hand domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100291666 LOC100291666 - - - 15 - serologically defined breast cancer antigen NY-BR-40 unknown - - - - 20120710 -9606 100291699 LOC100291699 - - - 15 - A disintegrin and metalloproteinase with thrombospondin motifs 7-like protein-coding - - - - 20121102 -9606 100291786 LOC100291786 - - - 2 - Ig kappa chain V-III region HAH-like other - - - - 20121209 -9606 100292025 LOC100292025 - - - 15 - histone H3.3-like pseudo - - - - 20121102 -9606 100292073 LOC100292073 - - - 12 - uncharacterized LOC100292073 unknown - - - - 20120710 -9606 100292239 LOC100292239 - - - 15 - uncharacterized LOC100292239 pseudo - - - - 20121102 -9606 100292290 LOC100292290 - - - 1 1p32-p31 heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100292429 LOC100292429 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100292650 LOC100292650 - - - 12 - protein FAM27E2-like pseudo - - - - 20121102 -9606 100292669 LOC100292669 - - - Un - double homeobox protein 4-like protein 2-like protein-coding - - - - 20121222 -9606 100292676 LOC100292676 - - - 7 - putative uncharacterized protein FLJ44672-like pseudo - - - - 20121102 -9606 100292680 LOC100292680 - - - 12 12p13 uncharacterized LOC100292680 miscRNA - - - - 20121230 -9606 100292888 LOC100292888 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100292909 LOC100292909 - - - 2 - uncharacterized LOC100292909 protein-coding - - - - 20121102 -9606 100292922 LOC100292922 - - - 22 - ankyrin repeat domain-containing protein 30B-like protein-coding - - - - 20121102 -9606 100292952 LOC100292952 - - - Y - zinc finger protein 285-like pseudo - - - - 20121102 -9606 100293044 LOC100293044 - - - 19 - uncharacterized LOC100293044 unknown - - - - 20121230 -9606 100293090 MTND4P12 - - HGNC:42199 5 5q31.1 MT-ND4 pseudogene 12 pseudo MTND4P12 MT-ND4 pseudogene 12 O - 20121230 -9606 100293211 LOC100293211 - - - Un - Ig heavy chain V-III region VH26-like other - - - - 20121102 -9606 100293516 ZNF587B - - HGNC:37142|Ensembl:ENSG00000198466 19 - zinc finger protein 587B protein-coding ZNF587B zinc finger protein 587B O - 20121230 -9606 100293534 LOC100293534 - - - 6 - complement C4-B-like protein-coding - - - - 20121216 -9606 100293612 LOC100293612 - - - 3 - uncharacterized LOC100293612 unknown - - - - 20121230 -9606 100293641 LOC100293641 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100293704 LOC100293704 - - - 12 - uncharacterized LOC100293704 miscRNA - - - - 20121209 -9606 100293710 LOC100293710 - - - Un - double homeobox protein 4-like pseudo - - - - 20121102 -9606 100293748 LOC100293748 - - - 1 - putative neuroblastoma breakpoint family member 6-like protein-like protein-coding - - - - 20121102 -9606 100293948 ATG12P2 - - HGNC:38605 2 - autophagy related 12 pseudogene 2 pseudo ATG12P2 autophagy related 12 pseudogene 2 O - 20121230 -9606 100293962 LOC100293962 - - - 12 - uncharacterized LOC100293962 miscRNA - - - - 20121209 -9606 100294033 LOC100294033 - - - 7 - protein FAM115A-like protein-coding - - - - 20121102 -9606 100294145 LOC100294145 - - - 6 - uncharacterized LOC100294145 miscRNA - - - - 20121230 -9606 100294160 LOC100294160 - - - 6 - protein FAM136A-like pseudo - - - - 20121102 -9606 100294188 LOC100294188 - - - 6 - protein FAM136A-like pseudo - - - - 20121102 -9606 100294316 LOC100294316 - - - 6 - protein FAM136A-like pseudo - - - - 20121102 -9606 100294336 LOC100294336 - - - 17 - dead end protein homolog 1-like pseudo - - - - 20121102 -9606 100294339 LOC100294339 - - - 17 - putative protein FAM215A-like pseudo - - - - 20121209 -9606 100294341 LOC100294341 - - - 17 - ADP-ribosylation factor-like protein 17-like protein-coding - - - - 20121102 -9606 100294362 LOC100294362 - - - 17 - uncharacterized LOC100294362 miscRNA - - - - 20121230 -9606 100294391 LOC100294391 - - - 1 - uncharacterized LOC100294391 protein-coding - - - uncharacterized protein LOC100294391 20120318 -9606 100294713 LOC100294713 - - - 12 12q12 IQ motif containing F1 pseudogene pseudo - - - - 20121230 -9606 100294715 BOP - - MIM:612691 6 6q16.3-q22.1 Polymicrogyria, bilateral occipital unknown - - - - 20120622 -9606 100294716 MYP15 - - HGNC:35440|MIM:612717 10 10q21.1 myopia 15 unknown MYP15 myopia 15 O - 20120622 -9606 100294717 BMND13 - - MIM:612727 16 16q23 Bone mineral density QTL 13 unknown - - - - 20120622 -9606 100294718 BMND14 - - MIM:612728 1 1p33-p32 Bone mineral density QTL 14 unknown - - - - 20120622 -9606 100294719 LBMQTL1 - - MIM:612729 8 8q23 Lean body mass QTL 1 unknown - - - - 20120622 -9606 100294720 NHEG1 - - - 6 6q23 neuroblastoma highly expressed 1 miscRNA - - - - 20121230 -9606 100301516 LOC100301516 - - - 7 - acyl-CoA thioesterase 13 pseudogene pseudo - - - - 20121230 -9606 100301521 LOC100301521 - - - 18 - chromosome 15 open reading frame 40 pseudogene pseudo - - - - 20121230 -9606 100301522 CELIAC7 - - MIM:612005 1 1q31 Celiac disease, susceptibility to, 7 unknown - - - - 20120622 -9606 100301523 STQTL12 - - MIM:612224 4 4q31 Stature QTL 12 unknown - - - - 20120622 -9606 100301525 DUH2 - - MIM:612715 12 12q21-q23 Dyschromatosis universalis hereditaria 2 unknown - - - - 20120622 -9606 100301526 STQTL17 - - MIM:612737 7 7p15 Stature QTL 17 unknown - - - - 20120622 -9606 100301527 SYNSTH - - MIM:612759 2 2q24.1 Synesthesia unknown - - - - 20120622 -9606 100301572 PRBNS - - MIM:261800 17 17q24.3-q25.1 Pierre Robin syndrome unknown - - - - 20120622 -9606 100301990 LOC100301990 - - - 3 3p21 zinc finger protein 610 pseudogene pseudo - - - - 20121230 -9606 100302058 LKMCD - - MIM:300660 X Xq25-q27 Leukoencephalopathy with metaphyseal chondrodysplasia unknown - - - - 20120622 -9606 100302059 IBD27 - - MIM:612796 13 13q13.3 Inflammatory bowel disease-27 unknown - - - - 20120622 -9606 100302090 DDX11L8 - - HGNC:37101 12 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 8 pseudo DDX11L8 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 8 O - 20121209 -9606 100302111 MIR1184-1 - MIR1184|MIRN1184|hsa-mir-1184|hsa-mir-1184-1 HGNC:35265|miRBase:MI0006277 X - microRNA 1184-1 miscRNA MIR1184-1 microRNA 1184-1 O - 20121209 -9606 100302112 MIR1284 - MIRN1284|hsa-mir-1284 HGNC:35362|miRBase:MI0006431 3 - microRNA 1284 miscRNA MIR1284 microRNA 1284 O - 20121230 -9606 100302113 MIR1200 - MIRN1200|hsa-mir-1200 HGNC:35266|miRBase:MI0006332 7 7p14.2 microRNA 1200 miscRNA MIR1200 microRNA 1200 O - 20121230 -9606 100302114 MIR513C - MIRN513C|hsa-mir-513c HGNC:33934|miRBase:MI0006649 X - microRNA 513c miscRNA MIR513C microRNA 513c O - 20121230 -9606 100302115 MIR1468 - MIRN1468|hsa-mir-1468 HGNC:35250|miRBase:MI0003782 X - microRNA 1468 miscRNA MIR1468 microRNA 1468 O - 20121230 -9606 100302116 MIR1265 - MIRN1265|hsa-mir-1265 HGNC:35332|miRBase:MI0006401 10 - microRNA 1265 miscRNA MIR1265 microRNA 1265 O - 20121230 -9606 100302117 MIR320B1 - MIR320B-1|MIRN320B1|hsa-mir-320b-1 HGNC:35247|miRBase:MI0003776 1 - microRNA 320b-1 miscRNA MIR320B1 microRNA 320b-1 O - 20121230 -9606 100302118 MIR1286 - MIRN1286|hsa-mir-1286 HGNC:35279|miRBase:MI0006348 22 - microRNA 1286 miscRNA MIR1286 microRNA 1286 O - 20121230 -9606 100302119 MIR1538 - MIRN1538|hsa-mir-1538 HGNC:35382|miRBase:MI0007259 16 - microRNA 1538 miscRNA MIR1538 microRNA 1538 O - 20121230 -9606 100302121 MIR1276 - MIRN1276|hsa-mir-1276 HGNC:35347|miRBase:MI0006416 15 15q25.3 microRNA 1276 miscRNA MIR1276 microRNA 1276 O - 20121230 -9606 100302122 MIR1183 - MIRN1183|hsa-mir-1183 HGNC:35264|miRBase:MI0006276 7 - microRNA 1183 miscRNA MIR1183 microRNA 1183 O - 20121230 -9606 100302123 MIR1275 - MIRN1275|hsa-mir-1275 HGNC:35346|miRBase:MI0006415 6 - microRNA 1275 miscRNA MIR1275 microRNA 1275 O - 20121230 -9606 100302124 MIR1288 - MIRN1288|hsa-mir-1288 HGNC:35363|miRBase:MI0006432 17 - microRNA 1288 miscRNA MIR1288 microRNA 1288 O - 20121230 -9606 100302125 MIR1289-1 - MIRN1289-1|hsa-mir-1289-1 HGNC:35281|miRBase:MI0006350 20 - microRNA 1289-1 miscRNA MIR1289-1 microRNA 1289-1 O - 20121230 -9606 100302126 MIR1471 - MIRN1471|hsa-mir-1471 HGNC:35380|miRBase:MI0007076 2 - microRNA 1471 miscRNA MIR1471 microRNA 1471 O - 20121230 -9606 100302127 MIR1470 - MIRN1470|hsa-mir-1470 HGNC:35379|miRBase:MI0007075 19 19p13.12 microRNA 1470 miscRNA MIR1470 microRNA 1470 O - 20121230 -9606 100302128 MIR1302-3 - MIRN1302-3|hsa-mir-1302-3 HGNC:35295|miRBase:MI0006364 2 2q13 microRNA 1302-3 miscRNA MIR1302-3 microRNA 1302-3 O - 20121230 -9606 100302129 MIR1915 - MIRN1915|hsa-mir-1915 HGNC:35399|miRBase:MI0008336 10 10p12.31 microRNA 1915 miscRNA MIR1915 microRNA 1915 O - 20121230 -9606 100302130 MIR1302-4 - MIRN1302-4|hsa-mir-1302-4 HGNC:35296|miRBase:MI0006365 2 - microRNA 1302-4 miscRNA MIR1302-4 microRNA 1302-4 O - 20121230 -9606 100302131 MIR302F - MIRN302F|hsa-mir-302f HGNC:35349|miRBase:MI0006418 18 18q12.1 microRNA 302f miscRNA MIR302F microRNA 302f O - 20121230 -9606 100302132 MIR1182 - MIRN1182|hsa-mir-1182 HGNC:35263|miRBase:MI0006275 1 1q42.2 microRNA 1182 miscRNA MIR1182 microRNA 1182 O - 20121230 -9606 100302133 MIR1287 - MIRN1287|hsa-mir-1287 HGNC:35280|miRBase:MI0006349 10 10q24.2 microRNA 1287 miscRNA MIR1287 microRNA 1287 O - 20121230 -9606 100302134 MIR1289-2 - MIRN1289-2|hsa-mir-1289-2 HGNC:35282|miRBase:MI0006351 5 - microRNA 1289-2 miscRNA MIR1289-2 microRNA 1289-2 O - 20121230 -9606 100302135 MIR320C1 - MIR320C-1|MIRN320C1|hsa-mir-320c-1 HGNC:35248|miRBase:MI0003778 18 - microRNA 320c-1 miscRNA MIR320C1 microRNA 320c-1 O - 20121230 -9606 100302136 MIR1252 - MIRN1252|hsa-mir-1252 HGNC:35365|miRBase:MI0006434 12 12q24.23 microRNA 1252 miscRNA MIR1252 microRNA 1252 O - 20121230 -9606 100302137 MIR1914 - MIRN1914|hsa-mir-1914 HGNC:35398|miRBase:MI0008335 20 20q13.33 microRNA 1914 miscRNA MIR1914 microRNA 1914 O - 20121230 -9606 100302138 MIR1292 - MIRN1292|hsa-mir-1292 HGNC:35364|MIM:614155|miRBase:MI0006433 20 - microRNA 1292 miscRNA MIR1292 microRNA 1292 O - 20121230 -9606 100302139 MIR1537 - MIRN1537|hsa-mir-1537 HGNC:35381|miRBase:MI0007258 1 - microRNA 1537 miscRNA MIR1537 microRNA 1537 O - 20121230 -9606 100302140 MIR1302-6 - MIRN1302-6|hsa-mir-1302-6 HGNC:35298|miRBase:MI0006367 7 7p21.1 microRNA 1302-6 miscRNA MIR1302-6 microRNA 1302-6 O - 20121230 -9606 100302141 MIR1913 - MIRN1913|hsa-mir-1913 HGNC:35397|miRBase:MI0008334 6 - microRNA 1913 miscRNA MIR1913 microRNA 1913 O - 20121230 -9606 100302142 MIR1246 - MIRN1246|hsa-mir-1246 HGNC:35312|miRBase:MI0006381 2 2q31.1 microRNA 1246 miscRNA MIR1246 microRNA 1246 O - 20121230 -9606 100302143 MIR1248 - MIRN1248|hsa-mir-1248 HGNC:35314|miRBase:MI0006383 3 3q27.3 microRNA 1248 miscRNA MIR1248 microRNA 1248 O - 20120511 -9606 100302144 MIR1912 - MIRN1912|hsa-mir-1912 HGNC:35396|miRBase:MI0008333 X - microRNA 1912 miscRNA MIR1912 microRNA 1912 O - 20121230 -9606 100302145 MIR1247 - MIRN1247|hsa-mir-1247 HGNC:35313|miRBase:MI0006382 14 - microRNA 1247 miscRNA MIR1247 microRNA 1247 O - 20121230 -9606 100302146 MIR1302-5 - MIRN1302-5|hsa-mir-1302-5 HGNC:35297|miRBase:MI0006366 20 - microRNA 1302-5 miscRNA MIR1302-5 microRNA 1302-5 O - 20121230 -9606 100302147 MIR1302-7 - MIRN1302-7|hsa-mir-1302-7 HGNC:35299|miRBase:MI0006368 8 - microRNA 1302-7 miscRNA MIR1302-7 microRNA 1302-7 O - 20121230 -9606 100302148 MIR1263 - MIRN1263|hsa-mir-1263 HGNC:35329|miRBase:MI0006398 3 3q26.1 microRNA 1263 miscRNA MIR1263 microRNA 1263 O - 20121230 -9606 100302149 MIR1249 - MIRN1249|hsa-mir-1249 HGNC:35315|miRBase:MI0006384 22 22q13.31 microRNA 1249 miscRNA MIR1249 microRNA 1249 O - 20121230 -9606 100302150 MIR1296 - MIRN1296|hsa-mir-1296 HGNC:35249|miRBase:MI0003780 10 - microRNA 1296 miscRNA MIR1296 microRNA 1296 O - 20121230 -9606 100302152 MIR548N - MIRN548N|hsa-mir-548n HGNC:35330|miRBase:MI0006399 7 7p14.3 microRNA 548n miscRNA MIR548N microRNA 548n O - 20121230 -9606 100302153 MIR1298 - MIRN1298|hsa-mir-1298 HGNC:35258|miRBase:MI0003938 X - microRNA 1298 miscRNA MIR1298 microRNA 1298 O - 20121230 -9606 100302155 MIR1256 - MIRN1256|hsa-mir-1256 HGNC:35321|miRBase:MI0006390 1 - microRNA 1256 miscRNA MIR1256 microRNA 1256 O - 20121230 -9606 100302156 MIR1229 - MIRN1229|hsa-mir-1229 HGNC:33924|miRBase:MI0006319 5 - microRNA 1229 miscRNA MIR1229 microRNA 1229 O - 20121230 -9606 100302157 MIR1185-1 - MIRN1185-1|hsa-mir-1185-1 HGNC:35257|miRBase:MI0003844 14 - microRNA 1185-1 miscRNA MIR1185-1 microRNA 1185-1 O - 20121230 -9606 100302158 MIR1231 - MIRN1231|hsa-mir-1231 HGNC:33921|miRBase:MI0006321 1 - microRNA 1231 miscRNA MIR1231 microRNA 1231 O - 20121230 -9606 100302159 MIR548F3 - MIR548F-3|MIRN548F3|hsa-mir-548f-3 HGNC:35307|miRBase:MI0006376 5 - microRNA 548f-3 miscRNA MIR548F3 microRNA 548f-3 O - 20121230 -9606 100302160 MIR1233-1 - MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1 HGNC:33929|miRBase:MI0006323 15 - microRNA 1233-1 miscRNA MIR1233-1 microRNA 1233-1 O - 20121209 -9606 100302161 MIR1205 - MIRN1205|hsa-mir-1205 HGNC:35271|miRBase:MI0006338 8 - microRNA 1205 miscRNA MIR1205 microRNA 1205 O - 20121230 -9606 100302163 MIR1278 - MIRN1278|hsa-mir-1278 HGNC:35356|miRBase:MI0006425 1 - microRNA 1278 miscRNA MIR1278 microRNA 1278 O - 20121230 -9606 100302164 MIR2113 - hsa-mir-2113 HGNC:37058|miRBase:MI0003939 6 - microRNA 2113 miscRNA MIR2113 microRNA 2113 O - 20121230 -9606 100302165 MIR1273A - MIR1273|MIRN1273|hsa-mir-1273|hsa-mir-1273a HGNC:35340|miRBase:MI0006409 8 8q22.2 microRNA 1273a miscRNA MIR1273A microRNA 1273a O - 20121230 -9606 100302166 MIR1322 - MIRN1322|hsa-mir-1322 HGNC:35374|miRBase:MI0006653 8 - microRNA 1322 miscRNA MIR1322 microRNA 1322 O - 20121230 -9606 100302167 MIR1299 - MIRN1299|hsa-mir-1299 HGNC:35290|miRBase:MI0006359 9 9q12 microRNA 1299 miscRNA MIR1299 microRNA 1299 O - 20121230 -9606 100302168 MIR1257 - MIRN1257|hsa-mir-1257 HGNC:35322|miRBase:MI0006391 20 20q13.33 microRNA 1257 miscRNA MIR1257 microRNA 1257 O - 20121230 -9606 100302169 MIR320D2 - MIR320D-2|MIRN320D2|hsa-mir-320d-2 HGNC:35388|miRBase:MI0008192 X - microRNA 320d-2 miscRNA MIR320D2 microRNA 320d-2 O - 20121230 -9606 100302170 MIR1206 - MIRN1206|hsa-mir-1206 HGNC:35272|miRBase:MI0006339 8 - microRNA 1206 miscRNA MIR1206 microRNA 1206 O - 20121230 -9606 100302171 MIR1321 - MIRN1321|hsa-mir-1321 HGNC:35373|miRBase:MI0006652 X Xq21.2 microRNA 1321 miscRNA MIR1321 microRNA 1321 O - 20121230 -9606 100302172 MIR1258 - MIRN1258|hsa-mir-1258 HGNC:35323|MIM:614488|miRBase:MI0006392 2 2q31.3 microRNA 1258 miscRNA MIR1258 microRNA 1258 O - 20121230 -9606 100302174 MIR1307 - MIRN1307|hsa-mir-1307 HGNC:35372|miRBase:MI0006444 10 - microRNA 1307 miscRNA MIR1307 microRNA 1307 O - 20121230 -9606 100302175 MIR1207 - MIRN1207|hsa-mir-1207 HGNC:35273|miRBase:MI0006340 8 - microRNA 1207 miscRNA MIR1207 microRNA 1207 O - 20121230 -9606 100302177 MIR1269A - MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a HGNC:35337|miRBase:MI0006406 4 - microRNA 1269a miscRNA MIR1269A microRNA 1269a O - 20121230 -9606 100302178 MIR1295A - MIR1295|MIRN1295|hsa-mir-1295|hsa-mir-1295a HGNC:35288|miRBase:MI0006357 1 - microRNA 1295a miscRNA MIR1295A microRNA 1295a O - 20121230 -9606 100302179 MIR1270-1 - MIR1270|MIRN1270|hsa-mir-1270|hsa-mir-1270-1 HGNC:35338|miRBase:MI0006407 19 - microRNA 1270-1 miscRNA MIR1270-1 microRNA 1270-1 O - 20121230 -9606 100302181 MIR1294 - MIRN1294|hsa-mir-1294 HGNC:35287|miRBase:MI0006356 5 - microRNA 1294 miscRNA MIR1294 microRNA 1294 O - 20121230 -9606 100302182 MIR1279 - MIRN1279|hsa-mir-1279 HGNC:35357|miRBase:MI0006426 12 - microRNA 1279 miscRNA MIR1279 microRNA 1279 O - 20121230 -9606 100302183 MIR1825 - MIRN1825|hsa-mir-1825 HGNC:35389|miRBase:MI0008193 20 - microRNA 1825 miscRNA MIR1825 microRNA 1825 O - 20121230 -9606 100302184 MIR1272 - MIRN1272|hsa-mir-1272 HGNC:35339|miRBase:MI0006408 15 - microRNA 1272 miscRNA MIR1272 microRNA 1272 O - 20121230 -9606 100302185 MIR1204 - hsa-mir-1204 HGNC:37059|miRBase:MI0006337 8 - microRNA 1204 miscRNA MIR1204 microRNA 1204 O - 20121230 -9606 100302186 MIR548I3 - MIR548I-3|MIRN548I3|hsa-mir-548i-3 HGNC:35354|miRBase:MI0006423 8 - microRNA 548i-3 miscRNA MIR548I3 microRNA 548i-3 O - 20121209 -9606 100302187 MIR1297 - MIRN1297|hsa-mir-1297 HGNC:35289|miRBase:MI0006358 13 - microRNA 1297 miscRNA MIR1297 microRNA 1297 O - 20121230 -9606 100302188 MIR1243 - MIRN1243|hsa-mir-1243 HGNC:35304|miRBase:MI0006373 4 - microRNA 1243 miscRNA MIR1243 microRNA 1243 O - 20121230 -9606 100302190 MIR1976 - hsa-mir-1976 HGNC:37064|miRBase:MI0009986 1 - microRNA 1976 miscRNA MIR1976 microRNA 1976 O - 20121230 -9606 100302191 MIR548I4 - MIR548I-4|MIRN548I4|hsa-mir-548i-4 HGNC:35355|miRBase:MI0006424 X Xq21.1 microRNA 548i-4 miscRNA MIR548I4 microRNA 548i-4 O - 20121230 -9606 100302192 MIR548F1 - MIR548F-1|MIRN548F1|hsa-mir-548f-1 HGNC:35305|miRBase:MI0006374 10 10q21.1 microRNA 548f-1 miscRNA MIR548F1 microRNA 548f-1 O - 20121230 -9606 100302193 MIR1255A - MIRN1255A|hsa-mir-1255a HGNC:35320|miRBase:MI0006389 4 - microRNA 1255a miscRNA MIR1255A microRNA 1255a O - 20121230 -9606 100302195 MIR320C2 - MIR320C-2|MIRN320C2|hsa-mir-320c-2 HGNC:35387|miRBase:MI0008191 18 18q11.2 microRNA 320c-2 miscRNA MIR320C2 microRNA 320c-2 O - 20121230 -9606 100302196 MIR1234 - MIRN1234|hsa-mir-1234 HGNC:33926|miRBase:MI0006324 8 - microRNA 1234 miscRNA MIR1234 microRNA 1234 O - 20121209 -9606 100302197 MIR1306 - MIRN1306|hsa-mir-1306 HGNC:35371|miRBase:MI0006443 22 - microRNA 1306 miscRNA MIR1306 microRNA 1306 O - 20121230 -9606 100302201 MIR1228 - MIRN1228|hsa-mir-1228 HGNC:33928|miRBase:MI0006318 12 - microRNA 1228 miscRNA MIR1228 microRNA 1228 O - 20121230 -9606 100302202 MIR1266 - MIRN1266|hsa-mir-1266 HGNC:35334|miRBase:MI0006403 15 - microRNA 1266 miscRNA MIR1266 microRNA 1266 O - 20121230 -9606 100302203 MIR1271 - MIRN1271|hsa-mir-1271 HGNC:35252|miRBase:MI0003814 5 5q35 microRNA 1271 miscRNA MIR1271 microRNA 1271 O - 20121230 -9606 100302204 MIR548I1 - MIR548I-1|MIRN548I1|hsa-mir-548i-1 HGNC:35352|miRBase:MI0006421 3 - microRNA 548i-1 miscRNA MIR548I1 microRNA 548i-1 O - 20121230 -9606 100302205 MIR1283-2 - MIRN1283-2|hsa-mir-1283-2 HGNC:35361|miRBase:MI0006430 19 - microRNA 1283-2 miscRNA MIR1283-2 microRNA 1283-2 O - 20121230 -9606 100302208 MIR1253 - MIRN1253|hsa-mir-1253 HGNC:35318|miRBase:MI0006387 17 - microRNA 1253 miscRNA MIR1253 microRNA 1253 O - 20121230 -9606 100302209 MIR1185-2 - MIRN1185-2|hsa-mir-1185-2 HGNC:35254|miRBase:MI0003821 14 - microRNA 1185-2 miscRNA MIR1185-2 microRNA 1185-2 O - 20121230 -9606 100302210 MIR1909 - MIRN1909|hsa-mir-1909 HGNC:35393|miRBase:MI0008330 19 19p13.3 microRNA 1909 miscRNA MIR1909 microRNA 1909 O - 20121230 -9606 100302211 MIR1203 - MIRN1203|hsa-mir-1203 HGNC:35269|miRBase:MI0006335 17 - microRNA 1203 miscRNA MIR1203 microRNA 1203 O - 20121230 -9606 100302212 MIR1324 - MIRN1324|hsa-mir-1324 HGNC:35377|miRBase:MI0006657 3 - microRNA 1324 miscRNA MIR1324 microRNA 1324 O - 20121230 -9606 100302213 MIR1181 - MIRN1181|hsa-mir-1181 HGNC:35262|miRBase:MI0006274 19 - microRNA 1181 miscRNA MIR1181 microRNA 1181 O - 20121230 -9606 100302214 MIR1277 - MIRN1277|hsa-mir-1277 HGNC:35350|miRBase:MI0006419 X Xq24 microRNA 1277 miscRNA MIR1277 microRNA 1277 O - 20121230 -9606 100302217 MIR1827 - MIRN1827|hsa-mir-1827 HGNC:35391|miRBase:MI0008195 12 - microRNA 1827 miscRNA MIR1827 microRNA 1827 O - 20121230 -9606 100302218 MIR1285-1 - MIRN1285-1|hsa-mir-1285-1 HGNC:35277|miRBase:MI0006346 7 7q21-q22 microRNA 1285-1 miscRNA MIR1285-1 microRNA 1285-1 O - 20121230 -9606 100302219 MIR1245A - MIR1245|MIRN1245|hsa-mir-1245|hsa-mir-1245a HGNC:35311|miRBase:MI0006380 2 2q32.2 microRNA 1245a miscRNA MIR1245A microRNA 1245a O - 20121230 -9606 100302220 MIR1293 - MIRN1293|hsa-mir-1293 HGNC:35286|miRBase:MI0006355 12 - microRNA 1293 miscRNA MIR1293 microRNA 1293 O - 20121230 -9606 100302221 MIR1291 - MIRN1291|hsa-mir-1291 HGNC:35284|miRBase:MI0006353 12 - microRNA 1291 miscRNA MIR1291 microRNA 1291 O - 20120508 -9606 100302222 MIR1911 - MIRN1911|hsa-mir-1911 HGNC:35395|miRBase:MI0008332 X - microRNA 1911 miscRNA MIR1911 microRNA 1911 O - 20121230 -9606 100302223 MIR1302-8 - MIRN1302-8|hsa-mir-1302-8 HGNC:35300|miRBase:MI0006369 9 - microRNA 1302-8 miscRNA MIR1302-8 microRNA 1302-8 O - 20121230 -9606 100302224 MIR2110 - hsa-mir-2110 HGNC:37071|miRBase:MI0010629 10 - microRNA 2110 miscRNA MIR2110 microRNA 2110 O - 20121230 -9606 100302225 MIR2053 - hsa-mir-2053 HGNC:37069|miRBase:MI0010487 8 - microRNA 2053 miscRNA MIR2053 microRNA 2053 O - 20121230 -9606 100302226 MIR1238 - MIRN1238|hsa-mir-1238 HGNC:33933|miRBase:MI0006328 19 - microRNA 1238 miscRNA MIR1238 microRNA 1238 O - 20121230 -9606 100302227 MIR1302-1 - MIRN1302-1|hsa-mir-1302-1 HGNC:35293|miRBase:MI0006362 12 12q24 microRNA 1302-1 miscRNA MIR1302-1 microRNA 1302-1 O - 20121230 -9606 100302228 MIR1261 - MIRN1261|hsa-mir-1261 HGNC:35327|miRBase:MI0006396 11 - microRNA 1261 miscRNA MIR1261 microRNA 1261 O - 20121230 -9606 100302229 MIR1250 - MIRN1250|hsa-mir-1250 HGNC:35316|miRBase:MI0006385 17 - microRNA 1250 miscRNA MIR1250 microRNA 1250 O - 20121230 -9606 100302232 MIR1226 - MIRN1226|hsa-mir-1226 HGNC:33922|miRBase:MI0006313 3 3p21.31 microRNA 1226 miscRNA MIR1226 microRNA 1226 O - 20121230 -9606 100302233 MIR1268A - MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a HGNC:35336|miRBase:MI0006405 15 15q11.2 microRNA 1268a miscRNA MIR1268A microRNA 1268a O - 20121230 -9606 100302234 MIR664 - MIRN664|hsa-mir-664 HGNC:35370|miRBase:MI0006442 1 - microRNA 664 miscRNA MIR664 microRNA 664 O - 20121230 -9606 100302235 MIR1179 - MIRN1179|hsa-mir-1179 HGNC:35260|miRBase:MI0006272 15 - microRNA 1179 miscRNA MIR1179 microRNA 1179 O - 20121230 -9606 100302236 MIR1260A - MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a HGNC:35325|miRBase:MI0006394 14 - microRNA 1260a miscRNA MIR1260A microRNA 1260a O - 20121230 -9606 100302237 MIR1281 - MIRN1281|hsa-mir-1281 HGNC:35359|miRBase:MI0006428 22 - microRNA 1281 miscRNA MIR1281 microRNA 1281 O - 20121230 -9606 100302238 MIR103B1 - MIR103-1AS|MIRN103-1AS|hsa-mir-103-1-as HGNC:35384|miRBase:MI0007261 5 - microRNA 103b-1 miscRNA MIR103B1 microRNA 103b-1 O - 20121230 -9606 100302239 MIR548F5 - MIR548F-5|MIRN548F5|hsa-mir-548f-5 HGNC:35309|miRBase:MI0006378 X Xp21.1 microRNA 548f-5 miscRNA MIR548F5 microRNA 548f-5 O - 20121230 -9606 100302240 MIR1304 - MIRN1304|hsa-mir-1304 HGNC:35302|miRBase:MI0006371 11 - microRNA 1304 miscRNA MIR1304 microRNA 1304 O - 20121230 -9606 100302242 MIR1236 - MIRN1236|hsa-mir-1236 HGNC:33925|miRBase:MI0006326 6 - microRNA 1236 miscRNA MIR1236 microRNA 1236 O - 20121230 -9606 100302243 MIR1972-1 - MIR1972|hsa-mir-1972|hsa-mir-1972-1 HGNC:37060|miRBase:MI0009982 16 - microRNA 1972-1 miscRNA MIR1972-1 microRNA 1972-1 O - 20121230 -9606 100302246 MIR1301 - MIRN1301|hsa-mir-1301 HGNC:35253|miRBase:MI0003815 2 - microRNA 1301 miscRNA MIR1301 microRNA 1301 O - 20121230 -9606 100302250 MIR1197 - MIRN1197|hsa-mir-1197 HGNC:35376|miRBase:MI0006656 14 - microRNA 1197 miscRNA MIR1197 microRNA 1197 O - 20121230 -9606 100302251 MIR1264 - MIRN1264|hsa-mir-1264 HGNC:35246|miRBase:MI0003758 X - microRNA 1264 miscRNA MIR1264 microRNA 1264 O - 20121230 -9606 100302254 MIR1282 - MIRN1282|hsa-mir-1282 HGNC:35360|miRBase:MI0006429 15 - microRNA 1282 miscRNA MIR1282 microRNA 1282 O - 20121230 -9606 100302255 MIR1323 - MIRN1323|hsa-mir-1323 HGNC:35251|miRBase:MI0003786 19 19q13.42 microRNA 1323 miscRNA MIR1323 microRNA 1323 O - 20121230 -9606 100302256 MIR1180 - MIRN1180|hsa-mir-1180 HGNC:35261|miRBase:MI0006273 17 - microRNA 1180 miscRNA MIR1180 microRNA 1180 O - 20121230 -9606 100302257 MIR1539 - MIRN1539|hsa-mir-1539 HGNC:35383|miRBase:MI0007260 18 - microRNA 1539 miscRNA MIR1539 microRNA 1539 O - 20121230 -9606 100302258 MIR1469 - MIRN1469|hsa-mir-1469 HGNC:35378|miRBase:MI0007074 15 15q26.2 microRNA 1469 miscRNA MIR1469 microRNA 1469 O - 20121230 -9606 100302259 MIR1202 - MIRN1202|hsa-mir-1202 HGNC:35268|miRBase:MI0006334 6 - microRNA 1202 miscRNA MIR1202 microRNA 1202 O - 20121230 -9606 100302260 MIR2052 - hsa-mir-2052 HGNC:37068|miRBase:MI0010486 8 - microRNA 2052 miscRNA MIR2052 microRNA 2052 O - 20121230 -9606 100302261 MIR1910 - MIRN1910|hsa-mir-1910 HGNC:35394|miRBase:MI0008331 16 - microRNA 1910 miscRNA MIR1910 microRNA 1910 O - 20121230 -9606 100302263 MIR1908 - MIRN1908|hsa-mir-1908 HGNC:35392|miRBase:MI0008329 11 - microRNA 1908 miscRNA MIR1908 microRNA 1908 O - 20121230 -9606 100302265 MIR1283-1 - MIRN1283-1|hsa-mir-1283-1 HGNC:35255|miRBase:MI0003832 19 - microRNA 1283-1 miscRNA MIR1283-1 microRNA 1283-1 O - 20121230 -9606 100302267 MIR2054 - hsa-mir-2054 HGNC:37070|miRBase:MI0010488 4 4q28.1 microRNA 2054 miscRNA MIR2054 microRNA 2054 O - 20121230 -9606 100302268 MIR1285-2 - MIRN1285-2|hsa-mir-1285-2 HGNC:35278|miRBase:MI0006347 2 - microRNA 1285-2 miscRNA MIR1285-2 microRNA 1285-2 O - 20121230 -9606 100302270 MIR1305 - MIRN1305|hsa-mir-1305 HGNC:35303|miRBase:MI0006372 4 4q34.3 microRNA 1305 miscRNA MIR1305 microRNA 1305 O - 20121230 -9606 100302273 MIR1254-1 - MIR1254|MIRN1254|hsa-mir-1254|hsa-mir-1254-1 HGNC:35319|miRBase:MI0006388 10 10q21.3 microRNA 1254-1 miscRNA MIR1254-1 microRNA 1254-1 O - 20121230 -9606 100302274 MIR1178 - MIRN1178|hsa-mir-1178 HGNC:35259|miRBase:MI0006271 12 12q24.23 microRNA 1178 miscRNA MIR1178 microRNA 1178 O - 20121230 -9606 100302275 MIR548L - MIRN548L|hsa-mir-548l HGNC:35292|miRBase:MI0006361 11 - microRNA 548l miscRNA MIR548L microRNA 548l O - 20121230 -9606 100302276 MIR1290 - MIRN1290|hsa-mir-1290 HGNC:35283|miRBase:MI0006352 1 - microRNA 1290 miscRNA MIR1290 microRNA 1290 O - 20121230 -9606 100302277 MIR548I2 - MIR548I-2|MIRN548I2|hsa-mir-548i-2 HGNC:35353|miRBase:MI0006422 4 - microRNA 548i-2 miscRNA MIR548I2 microRNA 548i-2 O - 20121230 -9606 100302278 MIR1302-2 - MIRN1302-2|hsa-mir-1302-2 HGNC:35294|miRBase:MI0006363 1 - microRNA 1302-2 miscRNA MIR1302-2 microRNA 1302-2 O - 20121209 -9606 100302279 MIR1262 - MIRN1262|hsa-mir-1262 HGNC:35328|miRBase:MI0006397 1 1p31.3 microRNA 1262 miscRNA MIR1262 microRNA 1262 O - 20121230 -9606 100302280 MIR1237 - MIRN1237|hsa-mir-1237 HGNC:33927|miRBase:MI0006327 11 - microRNA 1237 miscRNA MIR1237 microRNA 1237 O - 20121230 -9606 100302281 MIR1208 - MIRN1208|hsa-mir-1208 HGNC:35274|miRBase:MI0006341 8 8q24.21 microRNA 1208 miscRNA MIR1208 microRNA 1208 O - 20121230 -9606 100302282 MIR103B2 - MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as HGNC:35385|miRBase:MI0007262 20 - microRNA 103b-2 miscRNA MIR103B2 microRNA 103b-2 O - 20121230 -9606 100302283 MIR1227 - MIRN1227|hsa-mir-1227 HGNC:33932|miRBase:MI0006316 19 - microRNA 1227 miscRNA MIR1227 microRNA 1227 O - 20121230 -9606 100302284 MIR1303 - MIRN1303|hsa-mir-1303 HGNC:35301|miRBase:MI0006370 5 - microRNA 1303 miscRNA MIR1303 microRNA 1303 O - 20121230 -9606 100302285 MIR1244-1 - MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 HGNC:35310|miRBase:MI0006379 2 - microRNA 1244-1 miscRNA MIR1244-1 microRNA 1244-1 O - 20121230 -9606 100302286 MIR1267 - MIRN1267|hsa-mir-1267 HGNC:35335|miRBase:MI0006404 13 - microRNA 1267 miscRNA MIR1267 microRNA 1267 O - 20121230 -9606 100302287 MIR548H3 - MIR548H-3|MIRN548H3|hsa-mir-548h-3 HGNC:35344|miRBase:MI0006413 17 - microRNA 548h-3 miscRNA MIR548H3 microRNA 548h-3 O - 20121230 -9606 100302288 MIR548P - MIRN548P|hsa-mir-548p HGNC:35351|miRBase:MI0006420 5 5q21.1 microRNA 548p miscRNA MIR548P microRNA 548p O - 20121230 -9606 100302289 MIR1251 - MIRN1251|hsa-mir-1251 HGNC:35317|miRBase:MI0006386 12 - microRNA 1251 miscRNA MIR1251 microRNA 1251 O - 20121230 -9606 100302290 MIR1973 - hsa-mir-1973 HGNC:37061|miRBase:MI0009983 4 - microRNA 1973 miscRNA MIR1973 microRNA 1973 O - 20121230 -9606 100302291 LOC100302291 - - - 1 1q forty-two-three domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100302292 NBPF23 - - HGNC:37075|MIM:612970 1 1q21.2 neuroblastoma breakpoint family, member 23 protein-coding NBPF23 neuroblastoma breakpoint family, member 23 O - 20120508 -9606 100302300 ARTC1 - - - - - Ag recognized by Treg cells 1 unknown - - - - 20120508 -9606 100302401 RASAL2-AS1 - - HGNC:44170 1 - RASAL2 antisense RNA 1 miscRNA RASAL2-AS1 RASAL2 antisense RNA 1 O - 20121230 -9606 100302509 LECD - - MIM:300778 X Xp22.3 Corneal dystrophy, Lisch epithelial unknown - - - - 20120622 -9606 100302510 XECD - - MIM:300779 X Xq25 Corneal dystrophy, endothelial, X-linked unknown - - - - 20120622 -9606 100302511 EE - - MIM:610247 17 17q11.2 Esophagitis, eosinophilic unknown - - - - 20120622 -9606 100302512 RLS6 - - MIM:611185 6 6p21 Restless legs syndrome, susceptibility to, 6 unknown - - - - 20120622 -9606 100302513 DFNB71 - - HGNC:33172|MIM:612789 8 8p22-p21.3 deafness, autosomal recessive 71 unknown DFNB71 deafness, autosomal recessive 71 O - 20120622 -9606 100302514 NRCLP5 - - MIM:612851 14 14q11.2 Narcolepsy 5 unknown - - - - 20120622 -9606 100302515 OFC12 - - MIM:612858 8 8q24.31 Orofacial cleft 12 unknown - - - - 20121010 -9606 100302516 CTEPH1 - - MIM:612862 6 6p21.3 Pulmonary hypertension, chronic thromboembolic, without deep vein thrombosis, susceptibility to unknown - - - - 20120622 -9606 100302517 MENOQ2 - - MIM:612884 19 19q13.4 Menopause, natural, age at, QTL2 unknown - - - - 20120622 -9606 100302518 MENOQ3 - - MIM:612885 20 20p12.3 Menopause, natural, age at, QTL3 unknown - - - - 20120622 -9606 100302519 MENOQ4 - - MIM:612886 5 5q35.2 Menopause, natural, age at, QTL4 unknown - - - - 20120622 -9606 100302522 PTCSC1 - NCRNA00197|PTCSC HGNC:37127 8 8q24 papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding) miscRNA PTCSC1 papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding) O - 20120619 -9606 100302526 FAM41AY2 - - HGNC:37135 Y Yq11.2 family with sequence similarity 41, member A, Y-linked 2 miscRNA FAM41AY2 family with sequence similarity 41, member A, Y-linked 2 O - 20121230 -9606 100302559 PURAQTL1 - - MIM:612795 11 11q12-q13.1 Polyunsaturated fatty acids plasma level QTL1 unknown - - - - 20120622 -9606 100302560 MUHH2 - - MIM:612841 1 1p21.1-q21.3 Hypotrichosis, hereditary, Marie Unna type, 2 unknown - - - - 20120622 -9606 100302561 RLS7 - - MIM:612853 2 2p14-p13 Restless legs syndrome 7 unknown - - - - 20120622 -9606 100302562 MENAQ2 - - MIM:612882 6 6q21 Menarche, age at, QTL2 unknown - - - - 20120622 -9606 100302563 MENAQ3 - - MIM:612883 9 9q31.2 Menarche, age at, QTL3 unknown - - - - 20120622 -9606 100302591 LOC100302591 - - MIM:610808 17 17q12 TBC1 domain family member unknown - - - - 20120318 -9606 100302640 LOC100302640 - - - 3 3q13.12 uncharacterized LOC100302640 miscRNA - - - - 20121230 -9606 100302650 BRE-AS1 - - HGNC:44171 2 2p23 BRE antisense RNA 1 miscRNA BRE-AS1 BRE antisense RNA 1 O - 20121230 -9606 100302652 GPR75-ASB3 - - HGNC:40043|Ensembl:ENSG00000115239|Vega:OTTHUMG00000129279 2 2p16 GPR75-ASB3 readthrough protein-coding GPR75-ASB3 GPR75-ASB3 readthrough O GPR75-ASB3 protein 20121230 -9606 100302657 DDX11L3 - - HGNC:37104 3 3q29 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 3 pseudo DDX11L3 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 3 O - 20121120 -9606 100302666 LOC100302666 - - - 15 - chondroitin sulfate proteoglycan 4 pseudogene pseudo - - - - 20121230 -9606 100302680 DELXQ28 - MICRODELXq28 MIM:300475 X Xq28 Chromosome Xq28 microdeletion syndrome unknown - - - - 20120622 -9606 100302681 PVNH3 - - MIM:608098 5 5p15.1 Periventricular nodular heterotopia 3 unknown - - - - 20120622 -9606 100302682 PVNH5 - - MIM:612881 5 5q14.3-q15 Periventricular nodular heterotopia 5 unknown - - - - 20120622 -9606 100302683 STQTL18 - - MIM:612892 6 6p22.1 Stature QTL 18 unknown - - - - 20120622 -9606 100302684 STQTL19 - - MIM:612893 6 6p21.31 Stature QTL 19 unknown - - - - 20120622 -9606 100302685 STQTL20 - - MIM:612894 13 13q14.3 Stature QTL 20 unknown - - - - 20120622 -9606 100302686 MTBS3 - - MIM:612929 19 19q13.31-q33 Mycobacterium tuberculosis, susceptibility to, 3 unknown - - - - 20120622 -9606 100302689 GPN3P1 - - HGNC:44914 10 - GPN-loop GTPase 3 pseudogene 1 pseudo GPN3P1 GPN-loop GTPase 3 pseudogene 1 O - 20121230 -9606 100302690 DLG2-AS1 - DLG2-AS|DLG2AS|PSZA11q14|SZ-1 HGNC:37132 11 11q14.1 DLG2 antisense RNA 1 unknown DLG2-AS1 DLG2 antisense RNA 1 O - 20120816 -9606 100302691 LINC00184 - HANC|NCRNA00184 HGNC:37192 1 1q42.3 long intergenic non-protein coding RNA 184 miscRNA LINC00184 long intergenic non-protein coding RNA 184 O - 20121230 -9606 100302692 FTX - LINC00182|MIR374AHG|NCRNA00182 HGNC:37190 X Xq13.2 FTX transcript, XIST regulator (non-protein coding) miscRNA FTX FTX transcript, XIST regulator (non-protein coding) O - 20121230 -9606 100302716 HTGH - DEL17q24 MIM:135400 17 17q24.2-q24.3 Hypertrichosis terminalis, generalized, with or without gingival hyperplasia unknown - - - - 20120622 -9606 100302718 B6QTL1 - - MIM:612957 1 1p36.12 Vitamin B6 plasma level QTL 1 unknown - - - - 20120622 -9606 100302719 BMIQ15 - - MIM:612967 17 17q23.2-q25.1 Body mass index QTL 15 unknown - - - - 20120622 -9606 100302720 CATC3 - - MIM:612968 1 1p34.3-p32.2 Cataract, autosomal recessive congenital 3 unknown - - - - 20120622 -9606 100302721 ARHI2 - - MIM:612976 3 3p26.1-p25.1 Age-related hearing impairment 2 unknown - - - - 20120622 -9606 100302736 TMED7-TICAM2 - TAG HGNC:33945|Ensembl:ENSG00000243414|Ensembl:ENSG00000251201|Vega:OTTHUMG00000162911 5 - TMED7-TICAM2 readthrough protein-coding TMED7-TICAM2 TMED7-TICAM2 readthrough O TMED7-TICAM2 read-through transcript|TRAM adaptor with GOLD domain 20121230 -9606 100302737 ZNF861P - - HGNC:34514 19 19p13.12 zinc finger protein 861, pseudogene pseudo ZNF861P zinc finger protein 861, pseudogene O - 20121230 -9606 100302738 RNU6-21 - - HGNC:34265 16 - RNA, U6 small nuclear 21 snRNA RNU6-21 RNA, U6 small nuclear 21 O - 20121230 -9606 100302739 PCNA-AS1 - PCNA-AS|PCNAAS HGNC:37184 20 20pter-p12 PCNA antisense RNA 1 miscRNA PCNA-AS1 PCNA antisense RNA 1 O - 20121230 -9606 100302740 FAS-AS1 - FAS-AS|FASAS|SAF HGNC:37128 10 10q24.1 FAS antisense RNA 1 miscRNA FAS-AS1 FAS antisense RNA 1 O - 20121230 -9606 100302741 RNU6-15 - - HGNC:34259 10 - RNA, U6 small nuclear 15 snRNA RNU6-15 RNA, U6 small nuclear 15 O - 20121230 -9606 100302742 RNU6-42 - - HGNC:34286 3 - RNA, U6 small nuclear 42 snRNA RNU6-42 RNA, U6 small nuclear 42 O - 20121230 -9606 100302743 SNORA80B - ACA67B HGNC:34355 2 2p25.1 small nucleolar RNA, H/ACA box 80B snoRNA SNORA80B small nucleolar RNA, H/ACA box 80B O - 20121230 -9606 100302746 NCRUPAR - NCRNA00193|ncR-uPAR HGNC:37153 5 5q13.3 non-protein coding RNA, upstream of F2R/PAR1 miscRNA NCRUPAR non-protein coding RNA, upstream of F2R/PAR1 O - 20121230 -9606 100302751 NCLP1 - - HGNC:35472 9 9q34.3 nucleolin pseudogene 1 pseudo NCLP1 nucleolin pseudogene 1 O - 20121230 -9606 100303453 TSNAX-DISC1 - - - 1 1q42.1 TSNAX-DISC1 readthrough miscRNA - - - - 20121230 -9606 100303491 ZEB2-AS1 - ZEB2-AS|ZEB2AS|ZEB2NAT HGNC:37149 2 2q22.3 ZEB2 antisense RNA 1 miscRNA ZEB2-AS1 ZEB2 antisense RNA 1 O - 20121230 -9606 100303715 IDDM24 - - MIM:613006 10 10q23.31 Diabetes mellitus, insulin-dependent, 24 unknown - - - - 20120622 -9606 100303716 PBC2 - - MIM:613007 6 6p21.3 Biliary cirrhosis, primary, 2 unknown - - - - 20120622 -9606 100303717 PBC3 - - MIM:613008 1 1p31.2 Biliary cirrhosis, primary, 3 unknown - - - - 20120622 -9606 100303728 SLC25A5-AS1 - - HGNC:43438 X - SLC25A5 antisense RNA 1 miscRNA SLC25A5-AS1 SLC25A5 antisense RNA 1 O - 20121230 -9606 100303743 LSM3P5 - - HGNC:44350 16 16q LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 5 pseudo LSM3P5 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 5 O - 20121230 -9606 100303745 LSM3P2 - - HGNC:44347 12 12q LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 2 pseudo LSM3P2 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100303748 LSM3P1 - - HGNC:44346 17 17q LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 1 pseudo LSM3P1 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100303749 LOC100303749 - - - 5 5q LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100303755 PET117 UNQ607 - HGNC:40045|MIM:614771|Ensembl:ENSG00000232838 20 20p11.23 PET117 homolog (S. cerevisiae) protein-coding PET117 PET117 homolog (S. cerevisiae) O protein PET117 homolog, mitochondrial 20121230 -9606 100306937 NBLST4 - - MIM:613015 6 6p22 Neuroblastoma, susceptibility to, 4 unknown - - - - 20120622 -9606 100306938 NBLST5 - - MIM:613016 2 2q35 Neuroblastoma, susceptibility to, 5 unknown - - - - 20120622 -9606 100306939 NBLST6 - - MIM:613017 1 1q21.1 Neuroblastoma, susceptibility to, 6 unknown - - - - 20120622 -9606 100306940 FL1 - - MIM:613024 6 6p21.33 Follicular lymphoma, susceptibility to, 1 unknown - - - - 20120622 -9606 100306951 PITPNA-AS1 - - HGNC:44116 17 17p13.3 PITPNA antisense RNA 1 miscRNA PITPNA-AS1 PITPNA antisense RNA 1 O - 20121230 -9606 100306975 NDUFAF4P1 - - HGNC:44194 15 - NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 1 pseudo NDUFAF4P1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 1 O - 20121230 -9606 100306978 DEL19Q13.11 - C19DELq13.11 MIM:613026 19 19q13.11 Chromosome 19q13.11 deletion syndrome unknown - - - - 20120622 -9606 100306979 ATFB8 - - MIM:613055 16 16q22 Atrial fibrillation, familial, 8 unknown - - - - 20120622 -9606 100307118 BCC1 - - MIM:605462 1 1p36 Basal cell carcinoma, susceptibility to, 1 unknown - - - - 20120622 -9606 100307119 BCC2 - - MIM:613058 1 1q42 Basal cell carcinoma, susceptibility to, 2 unknown - - - - 20120622 -9606 100307120 BCC3 - - MIM:613059 5 5p15.33 Basal cell carcinoma, susceptibility to, 3 unknown - - - - 20120622 -9606 100307121 BCC4 - - MIM:613061 12 12q13 Basal cell carcinoma, susceptibility to, 4 unknown - - - - 20120622 -9606 100307122 BCC5 - - MIM:613062 9 9p21 Basal cell carcinoma, susceptibility to, 5 unknown - - - - 20120622 -9606 100307123 BCC6 - - MIM:613063 7 7q32 Basal cell carcinoma, susceptibility to, 6 unknown - - - - 20120622 -9606 100307126 CHMP4BP1 - - HGNC:43616 14 14q22.3 charged multivesicular body protein 4B pseudogene 1 pseudo CHMP4BP1 charged multivesicular body protein 4B pseudogene 1 O - 20121230 -9606 100309464 OTX2-AS1 - OTX2OS1 HGNC:43906 14 - OTX2 antisense RNA 1 (head to head) miscRNA OTX2-AS1 OTX2 antisense RNA 1 (head to head) O - 20121230 -9606 100310754 DUPXP11.23P11.22 - CXDUPp11.23p11.22 MIM:300801 X Xp11.23-p11.22 Chromosome Xp11.23-p11.22 duplication syndrome unknown - - - - 20120622 -9606 100310755 ATOD7 - - MIM:613064 11 11q13.5 Dermatitis, atopic, susceptibility to, 7 unknown - - - - 20120622 -9606 100310756 LOC100310756 - - - 8 8q24.3 uncharacterized LOC100310756 unknown - - - - 20120508 -9606 100310782 LOC100310782 - - - 5 5p15.3 mitochondrial translational initiation factor 3 pseudogene pseudo - - - - 20121230 -9606 100310785 ALL1 - - MIM:613065 10 10q21 Leukemia, acute lymphocytic, susceptibility to, 1 unknown - - - - 20121209 -9606 100310786 ALL2 - - MIM:613067 7 7p12.2 Leukemia, acute lymphoblastic, susceptibility to, 2 unknown - - - - 20120622 -9606 100310812 SPDYE2L - - Ensembl:ENSG00000173678|Vega:OTTHUMG00000158393 7 7q22.1 WBSCR19-like protein 3 protein-coding - - - putative WBSCR19-like protein 3|putative speedy protein E2-like protein 20121209 -9606 100310835 LOC100310835 - - - 16 16q12.2 thyroid hormone receptor interactor 13 pseudogene pseudo - - - - 20121230 -9606 100310838 VDAC1P3 - - HGNC:37478 X - voltage-dependent anion channel 1 pseudogene 3 pseudo VDAC1P3 voltage-dependent anion channel 1 pseudogene 3 O - 20121230 -9606 100310839 VDAC1P7 - - HGNC:37482 3 - voltage-dependent anion channel 1 pseudogene 7 pseudo VDAC1P7 voltage-dependent anion channel 1 pseudogene 7 O - 20121230 -9606 100310840 VDAC1P8 - - HGNC:37483 6 - voltage-dependent anion channel 1 pseudogene 8 pseudo VDAC1P8 voltage-dependent anion channel 1 pseudogene 8 O - 20121230 -9606 100310841 VDAC1P11 - - HGNC:37480 9 - voltage-dependent anion channel 1 pseudogene 11 pseudo VDAC1P11 voltage-dependent anion channel 1 pseudogene 11 O - 20121230 -9606 100310842 RBPJP1 - IGKJRBP1|RBPSUHP1 HGNC:5725 9 9p13-p12 RBPJ pseudogene 1 pseudo RBPJP1 RBPJ pseudogene 1 O - 20120720 -9606 100310846 ANKRD61 - - HGNC:22467 7 7p22 ankyrin repeat domain 61 protein-coding ANKRD61 ankyrin repeat domain 61 O ankyrin repeat domain-containing protein 61 20121201 -9606 100310848 LOC100310848 - - - 18 18p11.3 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310849 LOC100310849 - - - 7 7p15 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310850 LOC100310850 - - - 3 3q21 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310851 LOC100310851 - - - 3 3q21 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310852 LOC100310852 - - - 12 12p13 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310853 LOC100310853 - - - 7 7q21 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310854 LOC100310854 - - - 11 11q13 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310855 LOC100310855 - - - 11 11q13 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310856 LOC100310856 - - - 8 8p23 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310857 LOC100310857 - - - 8 8p23 small nuclear ribonucleoprotein polypeptide C pseudogene pseudo - - - - 20121230 -9606 100310869 IGKV2OR2-7D - - HGNC:37489|IMGT/GENE-DB:IGKV2/OR2-7D 2 2q11.2 immunoglobulin kappa variable 2/OR2-7D (pseudogene) pseudo IGKV2OR2-7D immunoglobulin kappa variable 2/OR2-7D (pseudogene) O - 20121230 -9606 100312774 VN1R56P - - HGNC:37376 11 11p15.4 vomeronasal 1 receptor 56 pseudogene pseudo VN1R56P vomeronasal 1 receptor 56 pseudogene O - 20121230 -9606 100312775 VN1R20P - - HGNC:37335 3 3p25.1 vomeronasal 1 receptor 20 pseudogene pseudo VN1R20P vomeronasal 1 receptor 20 pseudogene O - 20121230 -9606 100312781 VN1R24P - - HGNC:37344 7 7p11.2 vomeronasal 1 receptor 24 pseudogene pseudo VN1R24P vomeronasal 1 receptor 24 pseudogene O - 20121230 -9606 100312782 VN1R25P - - HGNC:37345 7 7p11.2 vomeronasal 1 receptor 25 pseudogene pseudo VN1R25P vomeronasal 1 receptor 25 pseudogene O - 20121230 -9606 100312783 VN1R26P - - HGNC:37346 7 7p11.2 vomeronasal 1 receptor 26 pseudogene pseudo VN1R26P vomeronasal 1 receptor 26 pseudogene O - 20121230 -9606 100312784 VN1R27P - - HGNC:37347 7 7p11.2 vomeronasal 1 receptor 27 pseudogene pseudo VN1R27P vomeronasal 1 receptor 27 pseudogene O - 20121230 -9606 100312785 VN1R28P - - HGNC:37348 7 7p11.2 vomeronasal 1 receptor 28 pseudogene pseudo VN1R28P vomeronasal 1 receptor 28 pseudogene O - 20121230 -9606 100312786 VN1R29P - - HGNC:37349 7 7p11.2 vomeronasal 1 receptor 29 pseudogene pseudo VN1R29P vomeronasal 1 receptor 29 pseudogene O - 20121230 -9606 100312787 VN1R31P - - HGNC:37351 7 7q11.21 vomeronasal 1 receptor 31 pseudogene pseudo VN1R31P vomeronasal 1 receptor 31 pseudogene O - 20121230 -9606 100312788 VN1R32P - - HGNC:37352 7 7q11.21 vomeronasal 1 receptor 32 pseudogene pseudo VN1R32P vomeronasal 1 receptor 32 pseudogene O - 20121230 -9606 100312789 VN1R35P - - HGNC:37355 7 7q11.21 vomeronasal 1 receptor 35 pseudogene pseudo VN1R35P vomeronasal 1 receptor 35 pseudogene O - 20121230 -9606 100312790 VN1R36P - - HGNC:37356 7 7q11.21 vomeronasal 1 receptor 36 pseudogene pseudo VN1R36P vomeronasal 1 receptor 36 pseudogene O - 20121230 -9606 100312791 VN1R39P - - HGNC:37359 7 7q11.21 vomeronasal 1 receptor 39 pseudogene pseudo VN1R39P vomeronasal 1 receptor 39 pseudogene O - 20121230 -9606 100312792 VN1R40P - - HGNC:37360 7 7q11.21 vomeronasal 1 receptor 40 pseudogene pseudo VN1R40P vomeronasal 1 receptor 40 pseudogene O - 20121230 -9606 100312793 VN1R41P - - HGNC:37361 7 7q11.21 vomeronasal 1 receptor 41 pseudogene pseudo VN1R41P vomeronasal 1 receptor 41 pseudogene O - 20121230 -9606 100312794 VN1R42P - - HGNC:37362 7 7q11.21 vomeronasal 1 receptor 42 pseudogene pseudo VN1R42P vomeronasal 1 receptor 42 pseudogene O - 20121230 -9606 100312795 VN1R43P - - HGNC:37363 7 7q11.21 vomeronasal 1 receptor 43 pseudogene pseudo VN1R43P vomeronasal 1 receptor 43 pseudogene O - 20121230 -9606 100312796 VN1R45P - - HGNC:37365 8 8p11.21 vomeronasal 1 receptor 45 pseudogene pseudo VN1R45P vomeronasal 1 receptor 45 pseudogene O - 20121230 -9606 100312797 VN1R47P - - HGNC:37367 9 9p13.3 vomeronasal 1 receptor 47 pseudogene pseudo VN1R47P vomeronasal 1 receptor 47 pseudogene O - 20121230 -9606 100312798 VN1R48P - - HGNC:37368 9 9p13.1 vomeronasal 1 receptor 48 pseudogene pseudo VN1R48P vomeronasal 1 receptor 48 pseudogene O - 20121230 -9606 100312799 VN1R49P - - HGNC:37369 9 9q13 vomeronasal 1 receptor 49 pseudogene pseudo VN1R49P vomeronasal 1 receptor 49 pseudogene O - 20121230 -9606 100312800 VN1R50P - - HGNC:37370 9 9q21.11 vomeronasal 1 receptor 50 pseudogene pseudo VN1R50P vomeronasal 1 receptor 50 pseudogene O - 20121230 -9606 100312801 VN1R51P - - HGNC:37371 9 9q22.33 vomeronasal 1 receptor 51 pseudogene pseudo VN1R51P vomeronasal 1 receptor 51 pseudogene O - 20121230 -9606 100312802 VN1R52P - - HGNC:37372 9 9q22.33 vomeronasal 1 receptor 52 pseudogene pseudo VN1R52P vomeronasal 1 receptor 52 pseudogene O - 20121230 -9606 100312803 VN1R110P - - HGNC:37438 X Xp11.23 vomeronasal 1 receptor 110 pseudogene pseudo VN1R110P vomeronasal 1 receptor 110 pseudogene O - 20121230 -9606 100312804 VN1R15P - - HGNC:37327 1 1q42.13 vomeronasal 1 receptor 15 pseudogene pseudo VN1R15P vomeronasal 1 receptor 15 pseudogene O - 20121230 -9606 100312805 VN1R16P - - HGNC:37330 1 1q44 vomeronasal 1 receptor 16 pseudogene pseudo VN1R16P vomeronasal 1 receptor 16 pseudogene O - 20121230 -9606 100312806 VN1R53P - - HGNC:37373 10 10p11.21 vomeronasal 1 receptor 53 pseudogene pseudo VN1R53P vomeronasal 1 receptor 53 pseudogene O - 20121230 -9606 100312807 VN1R54P - - HGNC:37374 10 10q11.21 vomeronasal 1 receptor 54 pseudogene pseudo VN1R54P vomeronasal 1 receptor 54 pseudogene O - 20121230 -9606 100312808 VN1R55P - - HGNC:37375 10 10q23.31 vomeronasal 1 receptor 55 pseudogene pseudo VN1R55P vomeronasal 1 receptor 55 pseudogene O - 20121230 -9606 100312809 VN1R57P - - HGNC:37377 12 12q21.31 vomeronasal 1 receptor 57 pseudogene pseudo VN1R57P vomeronasal 1 receptor 57 pseudogene O - 20121230 -9606 100312810 VN1R58P - - HGNC:37378 13 13q11 vomeronasal 1 receptor 58 pseudogene pseudo VN1R58P vomeronasal 1 receptor 58 pseudogene O - 20121230 -9606 100312811 VN1R59P - - HGNC:37379 14 14q23.1 vomeronasal 1 receptor 59 pseudogene pseudo VN1R59P vomeronasal 1 receptor 59 pseudogene O - 20121230 -9606 100312812 VN1R60P - - HGNC:37380 15 15q11.2 vomeronasal 1 receptor 60 pseudogene pseudo VN1R60P vomeronasal 1 receptor 60 pseudogene O - 20121209 -9606 100312813 VN1R61P - - HGNC:37381 15 15q11.2 vomeronasal 1 receptor 61 pseudogene pseudo VN1R61P vomeronasal 1 receptor 61 pseudogene O - 20121230 -9606 100312814 VN1R62P - - HGNC:37382 15 15q11.2 vomeronasal 1 receptor 62 pseudogene pseudo VN1R62P vomeronasal 1 receptor 62 pseudogene O - 20121230 -9606 100312815 VN1R63P - - HGNC:37383 15 15q11.2 vomeronasal 1 receptor 63 pseudogene pseudo VN1R63P vomeronasal 1 receptor 63 pseudogene O - 20121230 -9606 100312816 VN1R69P - - HGNC:37390 16 16p11.2 vomeronasal 1 receptor 69 pseudogene pseudo VN1R69P vomeronasal 1 receptor 69 pseudogene O - 20121230 -9606 100312817 VN1R71P - - HGNC:37392 17 17q11.1 vomeronasal 1 receptor 71 pseudogene pseudo VN1R71P vomeronasal 1 receptor 71 pseudogene O - 20121230 -9606 100312818 VN1R73P - - HGNC:37394 18 18p11.21 vomeronasal 1 receptor 73 pseudogene pseudo VN1R73P vomeronasal 1 receptor 73 pseudogene O - 20121230 -9606 100312819 VN1R74P - - HGNC:37395 18 18p11.21 vomeronasal 1 receptor 74 pseudogene pseudo VN1R74P vomeronasal 1 receptor 74 pseudogene O - 20121230 -9606 100312820 VN1R75P - - HGNC:37396 18 18p11.21 vomeronasal 1 receptor 75 pseudogene pseudo VN1R75P vomeronasal 1 receptor 75 pseudogene O - 20121230 -9606 100312821 VN1R76P - - HGNC:37397 18 18q21.2 vomeronasal 1 receptor 76 pseudogene pseudo VN1R76P vomeronasal 1 receptor 76 pseudogene O - 20121230 -9606 100312822 VN1R77P - - HGNC:37398 19 19p12 vomeronasal 1 receptor 77 pseudogene pseudo VN1R77P vomeronasal 1 receptor 77 pseudogene O - 20121230 -9606 100312823 VN1R78P - - HGNC:37399 19 19p12 vomeronasal 1 receptor 78 pseudogene pseudo VN1R78P vomeronasal 1 receptor 78 pseudogene O - 20121230 -9606 100312824 VN1R79P - - HGNC:37400 19 19p12 vomeronasal 1 receptor 79 pseudogene pseudo VN1R79P vomeronasal 1 receptor 79 pseudogene O - 20121230 -9606 100312825 VN1R80P - - HGNC:37329 19 19p12 vomeronasal 1 receptor 80 pseudogene pseudo VN1R80P vomeronasal 1 receptor 80 pseudogene O - 20121230 -9606 100312826 VN1R81P - - HGNC:37401 19 19p12 vomeronasal 1 receptor 81 pseudogene pseudo VN1R81P vomeronasal 1 receptor 81 pseudogene O - 20121230 -9606 100312827 VN1R82P - - HGNC:37402 19 19p12 vomeronasal 1 receptor 82 pseudogene pseudo VN1R82P vomeronasal 1 receptor 82 pseudogene O - 20121230 -9606 100312828 VN1R83P - - HGNC:37403 19 19p12 vomeronasal 1 receptor 83 pseudogene pseudo VN1R83P vomeronasal 1 receptor 83 pseudogene O - 20121230 -9606 100312829 VN1R84P - - HGNC:37404 19 19p12 vomeronasal 1 receptor 84 pseudogene pseudo VN1R84P vomeronasal 1 receptor 84 pseudogene O - 20121230 -9606 100312830 VN1R85P - - HGNC:37405 19 19p12 vomeronasal 1 receptor 85 pseudogene pseudo VN1R85P vomeronasal 1 receptor 85 pseudogene O - 20121230 -9606 100312831 VN1R86P - - HGNC:37406 19 19p12 vomeronasal 1 receptor 86 pseudogene pseudo VN1R86P vomeronasal 1 receptor 86 pseudogene O - 20121230 -9606 100312832 VN1R87P - - HGNC:37407 19 19p12 vomeronasal 1 receptor 87 pseudogene pseudo VN1R87P vomeronasal 1 receptor 87 pseudogene O - 20121230 -9606 100312833 VN1R88P - - HGNC:37408 19 19p12 vomeronasal 1 receptor 88 pseudogene pseudo VN1R88P vomeronasal 1 receptor 88 pseudogene O - 20121230 -9606 100312834 VN1R89P - - HGNC:37409 19 19p12 vomeronasal 1 receptor 89 pseudogene pseudo VN1R89P vomeronasal 1 receptor 89 pseudogene O - 20121230 -9606 100312835 VN1R90P - - HGNC:37410 19 19p12 vomeronasal 1 receptor 90 pseudogene pseudo VN1R90P vomeronasal 1 receptor 90 pseudogene O - 20121230 -9606 100312836 VN1R91P - - HGNC:37411 19 19p12 vomeronasal 1 receptor 91 pseudogene pseudo VN1R91P vomeronasal 1 receptor 91 pseudogene O - 20121230 -9606 100312837 VN1R92P - - HGNC:37412 19 19p12 vomeronasal 1 receptor 92 pseudogene pseudo VN1R92P vomeronasal 1 receptor 92 pseudogene O - 20121230 -9606 100312838 VN1R93P - - HGNC:37413 19 19p12 vomeronasal 1 receptor 93 pseudogene pseudo VN1R93P vomeronasal 1 receptor 93 pseudogene O - 20121230 -9606 100312839 VN1R94P - - HGNC:37414 19 19p12 vomeronasal 1 receptor 94 pseudogene pseudo VN1R94P vomeronasal 1 receptor 94 pseudogene O - 20121230 -9606 100312840 VN1R97P - - HGNC:37417 19 19q13.33 vomeronasal 1 receptor 97 pseudogene pseudo VN1R97P vomeronasal 1 receptor 97 pseudogene O - 20121230 -9606 100312841 VN1R98P - - HGNC:37418 19 19q13.41 vomeronasal 1 receptor 98 pseudogene pseudo VN1R98P vomeronasal 1 receptor 98 pseudogene O - 20121230 -9606 100312842 VN1R99P - - HGNC:37419 19 19q13.41 vomeronasal 1 receptor 99 pseudogene pseudo VN1R99P vomeronasal 1 receptor 99 pseudogene O - 20121230 -9606 100312843 VN1R19P - - HGNC:37328 2 2q21.2 vomeronasal 1 receptor 19 pseudogene pseudo VN1R19P vomeronasal 1 receptor 19 pseudogene O - 20121230 -9606 100312844 VN1R22P - - HGNC:37337 4 4q25 vomeronasal 1 receptor 22 pseudogene pseudo VN1R22P vomeronasal 1 receptor 22 pseudogene O - 20121230 -9606 100312845 VN1R23P - - HGNC:37338 4 4q25 vomeronasal 1 receptor 23 pseudogene pseudo VN1R23P vomeronasal 1 receptor 23 pseudogene O - 20121230 -9606 100312846 VN1R100P - - HGNC:37420 19 19q13.41 vomeronasal 1 receptor 100 pseudogene pseudo VN1R100P vomeronasal 1 receptor 100 pseudogene O - 20121230 -9606 100312847 VN1R102P - - HGNC:37425 19 19q13.42 vomeronasal 1 receptor 102 pseudogene pseudo VN1R102P vomeronasal 1 receptor 102 pseudogene O - 20121230 -9606 100312848 VN1R106P hCG_2008275 FKSG41 HGNC:37429 19 19q13.42 vomeronasal 1 receptor 106 pseudogene pseudo VN1R106P vomeronasal 1 receptor 106 pseudogene O - 20121230 -9606 100312849 VN1R107P - - HGNC:37431 19 19q13.43 vomeronasal 1 receptor 107 pseudogene pseudo VN1R107P vomeronasal 1 receptor 107 pseudogene O - 20121230 -9606 100312850 VN1R108P - - HGNC:37432 20 20p11.1 vomeronasal 1 receptor 108 pseudogene pseudo VN1R108P vomeronasal 1 receptor 108 pseudogene O - 20121230 -9606 100312851 VN1R109P - - HGNC:37434 21 21q11.2 vomeronasal 1 receptor 109 pseudogene pseudo VN1R109P vomeronasal 1 receptor 109 pseudogene O - 20121230 -9606 100312852 VN1R111P - - HGNC:37332 13 - vomeronasal 1 receptor 111 pseudogene pseudo VN1R111P vomeronasal 1 receptor 111 pseudogene O - 20121230 -9606 100312853 VN1R72P - - HGNC:37393 17 - vomeronasal 1 receptor 72 pseudogene pseudo VN1R72P vomeronasal 1 receptor 72 pseudogene O - 20121209 -9606 100312854 VN1R112P - - HGNC:37437 22 - vomeronasal 1 receptor 112 pseudogene pseudo VN1R112P vomeronasal 1 receptor 112 pseudogene O - 20121230 -9606 100312855 VN1R44P - - HGNC:37364 7 - vomeronasal 1 receptor 44 pseudogene pseudo VN1R44P vomeronasal 1 receptor 44 pseudogene O - 20121230 -9606 100312950 SCA31 - - HGNC:35432|MIM:117210 16 16q22 spinocerebellar ataxia 31 unknown SCA31 spinocerebellar ataxia 31 O - 20120622 -9606 100312951 NPCA2 - - MIM:161550 6 6p21.3 Nasopharyngeal carcinoma, susceptibility to, 2 unknown - - - - 20120622 -9606 100312952 PVOP1 - - MIM:176780 1 1q31 Pelvic organ prolapse, susceptibility to, 1 unknown - - - - 20120622 -9606 100312954 GRD1 - - MIM:275000 14 14q31 Graves disease, susceptiblity to, 1 unknown - - - - 20120622 -9606 100312955 PVOP2 - - MIM:613088 9 9q21 Pelvic organ prolapse, susceptibility to, 2 unknown - - - - 20120622 -9606 100312957 RNU1-6 - - HGNC:37499 1 1q21.2 RNA, U1 small nuclear 6 snRNA RNU1-6 RNA, U1 small nuclear 6 O - 20121230 -9606 100312985 IGKV1OR15-118 - IGKV1/OR-118|IGKV1/OR15-118|IGKV1OR118|IGKVP2 HGNC:5765|IMGT/GENE-DB:IGKV1/OR15-118 15 - immunoglobulin kappa variable 1/OR15-118 (pseudogene) pseudo IGKV1OR15-118 immunoglobulin kappa variable 1/OR15-118 (pseudogene) O - 20120318 -9606 100313532 LOC100313532 - - - 17 17p13.2 major facilitator superfamily domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100313769 MIR320B2 - MIR320B-2|MIRN320B2 HGNC:35256|miRBase:MI0003839 1 1q42.11 microRNA 320b-2 miscRNA MIR320B2 microRNA 320b-2 O - 20121230 -9606 100313770 MIR548K - MIRN548K HGNC:35285|miRBase:MI0006354 11 11q13.3 microRNA 548k miscRNA MIR548K microRNA 548k O - 20121230 -9606 100313771 MIR548F2 - MIR548F-2|MIRN548F2|hsa-mir-548f-2 HGNC:35306|miRBase:MI0006375 2 2q34 microRNA 548f-2 miscRNA MIR548F2 microRNA 548f-2 O - 20121230 -9606 100313772 MIR548M - MIRN548M HGNC:35331|miRBase:MI0006400 X Xq21.33 microRNA 548m miscRNA MIR548M microRNA 548m O - 20121230 -9606 100313773 MIR548H2 - MIR548H-2|MIRN548H2 HGNC:35343|miRBase:MI0006412 16 - microRNA 548h-2 miscRNA MIR548H2 microRNA 548h-2 O - 20121230 -9606 100313774 MIR302E - MIRN302E HGNC:35348|miRBase:MI0006417 11 11p15.4 microRNA 302e miscRNA MIR302E microRNA 302e O - 20121230 -9606 100313777 MIR670 - hsa-mir-670 HGNC:37304|miRBase:MI0003933 11 - microRNA 670 miscRNA MIR670 microRNA 670 O - 20121230 -9606 100313778 MIR759 - hsa-mir-759 HGNC:37307|miRBase:MI0004065 13 - microRNA 759 miscRNA MIR759 microRNA 759 O - 20121230 -9606 100313779 MIR2117 - - HGNC:37311|miRBase:MI0010636 17 - microRNA 2117 miscRNA MIR2117 microRNA 2117 O - 20121230 -9606 100313780 MIR2278 - - HGNC:37315|miRBase:MI0011285 9 - microRNA 2278 miscRNA MIR2278 microRNA 2278 O - 20121230 -9606 100313781 MIR718 - hsa-mir-718 HGNC:37317|miRBase:MI0012489 X - microRNA 718 miscRNA MIR718 microRNA 718 O - 20121230 -9606 100313782 PIRC7 - - HGNC:37511 1 - piwi-interacting RNA cluster 7 other PIRC7 piwi-interacting RNA cluster 7 O - 20120318 -9606 100313783 PIRC10 - - HGNC:37514 2 - piwi-interacting RNA cluster 10 other PIRC10 piwi-interacting RNA cluster 10 O - 20120318 -9606 100313784 PIRC14 - - HGNC:37518 3 - piwi-interacting RNA cluster 14 other PIRC14 piwi-interacting RNA cluster 14 O - 20120318 -9606 100313785 PIRC20 - - HGNC:37524 5 - piwi-interacting RNA cluster 20 other PIRC20 piwi-interacting RNA cluster 20 O - 20120318 -9606 100313786 PIRC23 - - HGNC:37527 5 - piwi-interacting RNA cluster 23 other PIRC23 piwi-interacting RNA cluster 23 O - 20120318 -9606 100313787 PIRC31 - - HGNC:37535 7 - piwi-interacting RNA cluster 31 other PIRC31 piwi-interacting RNA cluster 31 O - 20120318 -9606 100313788 PIRC38 - - HGNC:37542 9 - piwi-interacting RNA cluster 38 other PIRC38 piwi-interacting RNA cluster 38 O - 20120318 -9606 100313789 PIRC42 - - HGNC:37546 9 - piwi-interacting RNA cluster 42 other PIRC42 piwi-interacting RNA cluster 42 O - 20120318 -9606 100313790 PIRC48 - - HGNC:37552 10 - piwi-interacting RNA cluster 48 other PIRC48 piwi-interacting RNA cluster 48 O - 20120318 -9606 100313791 PIRC52 - - HGNC:37556 11 - piwi-interacting RNA cluster 52 other PIRC52 piwi-interacting RNA cluster 52 O - 20120318 -9606 100313792 PIRC55 - - HGNC:37559 12 - piwi-interacting RNA cluster 55 other PIRC55 piwi-interacting RNA cluster 55 O - 20120318 -9606 100313793 PIRC63 - - HGNC:37567 15 - piwi-interacting RNA cluster 63 other PIRC63 piwi-interacting RNA cluster 63 O - 20120318 -9606 100313794 PIRC65 - - HGNC:37569 15 - piwi-interacting RNA cluster 65 other PIRC65 piwi-interacting RNA cluster 65 O - 20120318 -9606 100313795 PIRC73 - - HGNC:37577 15 - piwi-interacting RNA cluster 73 other PIRC73 piwi-interacting RNA cluster 73 O - 20120318 -9606 100313796 PIRC76 - - HGNC:37580 15 - piwi-interacting RNA cluster 76 other PIRC76 piwi-interacting RNA cluster 76 O - 20120318 -9606 100313797 PIRC79 - - HGNC:37583 15 - piwi-interacting RNA cluster 79 other PIRC79 piwi-interacting RNA cluster 79 O - 20120318 -9606 100313798 PIRC90 - - HGNC:37594 17 - piwi-interacting RNA cluster 90 other PIRC90 piwi-interacting RNA cluster 90 O - 20120318 -9606 100313799 PIRC94 - - HGNC:37598 17 - piwi-interacting RNA cluster 94 other PIRC94 piwi-interacting RNA cluster 94 O - 20120318 -9606 100313800 PIRC96 - - HGNC:37600 18 - piwi-interacting RNA cluster 96 other PIRC96 piwi-interacting RNA cluster 96 O - 20120318 -9606 100313801 PIRC104 - - HGNC:37608 20 - piwi-interacting RNA cluster 104 other PIRC104 piwi-interacting RNA cluster 104 O - 20120318 -9606 100313802 PIRC107 - - HGNC:37611 22 - piwi-interacting RNA cluster 107 other PIRC107 piwi-interacting RNA cluster 107 O - 20120318 -9606 100313803 PIRC112 - - HGNC:37616 22 - piwi-interacting RNA cluster 112 other PIRC112 piwi-interacting RNA cluster 112 O - 20120318 -9606 100313806 MIR1255B1 - MIR1255B-1|MIRN1255B1 HGNC:35366|miRBase:MI0006435 4 - microRNA 1255b-1 miscRNA MIR1255B1 microRNA 1255b-1 O - 20121230 -9606 100313807 PIRC4 - - HGNC:37508 1 - piwi-interacting RNA cluster 4 other PIRC4 piwi-interacting RNA cluster 4 O - 20120318 -9606 100313808 PIRC12 - - HGNC:37516 3 - piwi-interacting RNA cluster 12 other PIRC12 piwi-interacting RNA cluster 12 O - 20120318 -9606 100313809 PIRC17 - - HGNC:37521 4 - piwi-interacting RNA cluster 17 other PIRC17 piwi-interacting RNA cluster 17 O - 20120318 -9606 100313810 PIRC24 - - HGNC:37528 6 - piwi-interacting RNA cluster 24 other PIRC24 piwi-interacting RNA cluster 24 O - 20120318 -9606 100313811 PIRC32 - - HGNC:37536 7 - piwi-interacting RNA cluster 32 other PIRC32 piwi-interacting RNA cluster 32 O - 20120318 -9606 100313812 PIRC37 - - HGNC:37541 9 - piwi-interacting RNA cluster 37 other PIRC37 piwi-interacting RNA cluster 37 O - 20120318 -9606 100313813 PIRC45 - - HGNC:37549 9 - piwi-interacting RNA cluster 45 other PIRC45 piwi-interacting RNA cluster 45 O - 20120318 -9606 100313814 PIRC50 - - HGNC:37554 11 - piwi-interacting RNA cluster 50 other PIRC50 piwi-interacting RNA cluster 50 O - 20120318 -9606 100313815 PIRC54 - - HGNC:37558 12 - piwi-interacting RNA cluster 54 other PIRC54 piwi-interacting RNA cluster 54 O - 20120318 -9606 100313816 PIRC62 - - HGNC:37566 15 - piwi-interacting RNA cluster 62 other PIRC62 piwi-interacting RNA cluster 62 O - 20120318 -9606 100313817 PIRC67 - - HGNC:37571 15 - piwi-interacting RNA cluster 67 other PIRC67 piwi-interacting RNA cluster 67 O - 20120318 -9606 100313818 PIRC71 - - HGNC:37575 15 - piwi-interacting RNA cluster 71 other PIRC71 piwi-interacting RNA cluster 71 O - 20120318 -9606 100313819 PIRC80 - - HGNC:37584 15 - piwi-interacting RNA cluster 80 other PIRC80 piwi-interacting RNA cluster 80 O - 20120318 -9606 100313820 PIRC84 - - HGNC:37588 16 - piwi-interacting RNA cluster 84 other PIRC84 piwi-interacting RNA cluster 84 O - 20120318 -9606 100313821 PIRC97 - - HGNC:37601 19 - piwi-interacting RNA cluster 97 other PIRC97 piwi-interacting RNA cluster 97 O - 20120318 -9606 100313822 MIR513B - MIRN513B HGNC:33935|miRBase:MI0006648 X Xq27.3 microRNA 513b miscRNA MIR513B microRNA 513b O - 20121230 -9606 100313824 MIR663B - MIRN663B HGNC:35270|miRBase:MI0006336 2 - microRNA 663b miscRNA MIR663B microRNA 663b O - 20121230 -9606 100313829 MIR548O - MIRN548O HGNC:35333|miRBase:MI0006402 7 7q22.1 microRNA 548o miscRNA MIR548O microRNA 548o O - 20121230 -9606 100313830 MIR548H1 - MIR548H-1|MIRN548H1 HGNC:35342|miRBase:MI0006411 14 14q23.2 microRNA 548h-1 miscRNA MIR548H1 microRNA 548h-1 O - 20121230 -9606 100313835 MIR1255B2 - MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 HGNC:35367|miRBase:MI0006436 1 - microRNA 1255b-2 miscRNA MIR1255B2 microRNA 1255b-2 O - 20121230 -9606 100313837 MIR762 - hsa-mir-762 HGNC:37303|miRBase:MI0003892 16 - microRNA 762 miscRNA MIR762 microRNA 762 O - 20121230 -9606 100313838 MIR764 - hsa-mir-764 HGNC:37306|miRBase:MI0003944 X - microRNA 764 miscRNA MIR764 microRNA 764 O - 20121230 -9606 100313839 MIR2114 - - HGNC:37308|miRBase:MI0010633 X - microRNA 2114 miscRNA MIR2114 microRNA 2114 O - 20121230 -9606 100313840 MIR2115 - - HGNC:37309|miRBase:MI0010634 3 - microRNA 2115 miscRNA MIR2115 microRNA 2115 O - 20121230 -9606 100313841 MIR548Q - - HGNC:37312|miRBase:MI0010637 10 10p13 microRNA 548q miscRNA MIR548Q microRNA 548q O - 20121230 -9606 100313842 MIR2276 - - HGNC:37313|miRBase:MI0011282 13 - microRNA 2276 miscRNA MIR2276 microRNA 2276 O - 20121230 -9606 100313843 MIR711 - hsa-mir-711 HGNC:37316|miRBase:MI0012488 3 - microRNA 711 miscRNA MIR711 microRNA 711 O - 20121230 -9606 100313844 PIRC1 - - HGNC:37505 1 - piwi-interacting RNA cluster 1 other PIRC1 piwi-interacting RNA cluster 1 O - 20120318 -9606 100313845 PIRC5 - - HGNC:37509 1 - piwi-interacting RNA cluster 5 other PIRC5 piwi-interacting RNA cluster 5 O - 20120318 -9606 100313846 PIRC6 - - HGNC:37510 1 - piwi-interacting RNA cluster 6 other PIRC6 piwi-interacting RNA cluster 6 O - 20120318 -9606 100313847 PIRC9 - - HGNC:37513 2 - piwi-interacting RNA cluster 9 other PIRC9 piwi-interacting RNA cluster 9 O - 20120318 -9606 100313848 PIRC15 - - HGNC:37519 3 - piwi-interacting RNA cluster 15 other PIRC15 piwi-interacting RNA cluster 15 O - 20120318 -9606 100313849 PIRC16 - - HGNC:37520 4 - piwi-interacting RNA cluster 16 other PIRC16 piwi-interacting RNA cluster 16 O - 20120318 -9606 100313850 PIRC22 - - HGNC:37526 5 - piwi-interacting RNA cluster 22 other PIRC22 piwi-interacting RNA cluster 22 O - 20120318 -9606 100313851 PIRC25 - - HGNC:37529 6 - piwi-interacting RNA cluster 25 other PIRC25 piwi-interacting RNA cluster 25 O - 20120318 -9606 100313852 PIRC26 - - HGNC:37530 6 - piwi-interacting RNA cluster 26 other PIRC26 piwi-interacting RNA cluster 26 O - 20120318 -9606 100313853 PIRC30 - - HGNC:37534 7 - piwi-interacting RNA cluster 30 other PIRC30 piwi-interacting RNA cluster 30 O - 20120318 -9606 100313854 PIRC33 - - HGNC:37537 7 - piwi-interacting RNA cluster 33 other PIRC33 piwi-interacting RNA cluster 33 O - 20120318 -9606 100313855 PIRC35 - - HGNC:37539 8 - piwi-interacting RNA cluster 35 other PIRC35 piwi-interacting RNA cluster 35 O - 20120318 -9606 100313856 PIRC39 - - HGNC:37543 9 - piwi-interacting RNA cluster 39 other PIRC39 piwi-interacting RNA cluster 39 O - 20120318 -9606 100313857 PIRC43 - - HGNC:37547 9 - piwi-interacting RNA cluster 43 other PIRC43 piwi-interacting RNA cluster 43 O - 20120318 -9606 100313858 PIRC46 - - HGNC:37550 9 - piwi-interacting RNA cluster 46 other PIRC46 piwi-interacting RNA cluster 46 O - 20120318 -9606 100313859 PIRC47 - - HGNC:37551 9 - piwi-interacting RNA cluster 47 other PIRC47 piwi-interacting RNA cluster 47 O - 20120318 -9606 100313860 PIRC51 - - HGNC:37555 11 - piwi-interacting RNA cluster 51 other PIRC51 piwi-interacting RNA cluster 51 O - 20120318 -9606 100313861 PIRC53 - - HGNC:37557 12 - piwi-interacting RNA cluster 53 other PIRC53 piwi-interacting RNA cluster 53 O - 20120318 -9606 100313862 PIRC56 - - HGNC:37560 12 - piwi-interacting RNA cluster 56 other PIRC56 piwi-interacting RNA cluster 56 O - 20120318 -9606 100313863 PIRC60 - - HGNC:37564 14 - piwi-interacting RNA cluster 60 other PIRC60 piwi-interacting RNA cluster 60 O - 20120318 -9606 100313864 PIRC64 - - HGNC:37568 15 - piwi-interacting RNA cluster 64 other PIRC64 piwi-interacting RNA cluster 64 O - 20120318 -9606 100313865 PIRC66 - - HGNC:37570 15 - piwi-interacting RNA cluster 66 other PIRC66 piwi-interacting RNA cluster 66 O - 20120318 -9606 100313866 PIRC70 - - HGNC:37574 15 - piwi-interacting RNA cluster 70 other PIRC70 piwi-interacting RNA cluster 70 O - 20120318 -9606 100313867 PIRC72 - - HGNC:37576 15 - piwi-interacting RNA cluster 72 other PIRC72 piwi-interacting RNA cluster 72 O - 20120318 -9606 100313868 PIRC77 - - HGNC:37581 15 - piwi-interacting RNA cluster 77 other PIRC77 piwi-interacting RNA cluster 77 O - 20120318 -9606 100313869 PIRC78 - - HGNC:37582 15 - piwi-interacting RNA cluster 78 other PIRC78 piwi-interacting RNA cluster 78 O - 20120318 -9606 100313870 PIRC81 - - HGNC:37585 15 - piwi-interacting RNA cluster 81 other PIRC81 piwi-interacting RNA cluster 81 O - 20120318 -9606 100313871 PIRC85 - - HGNC:37589 16 - piwi-interacting RNA cluster 85 other PIRC85 piwi-interacting RNA cluster 85 O - 20120318 -9606 100313872 PIRC87 - - HGNC:37591 16 - piwi-interacting RNA cluster 87 other PIRC87 piwi-interacting RNA cluster 87 O - 20120318 -9606 100313873 PIRC89 - - HGNC:37593 16 - piwi-interacting RNA cluster 89 other PIRC89 piwi-interacting RNA cluster 89 O - 20120318 -9606 100313874 PIRC98 - - HGNC:37602 19 - piwi-interacting RNA cluster 98 other PIRC98 piwi-interacting RNA cluster 98 O - 20120318 -9606 100313875 PIRC99 - - HGNC:37603 19 - piwi-interacting RNA cluster 99 other PIRC99 piwi-interacting RNA cluster 99 O - 20120318 -9606 100313876 PIRC102 - - HGNC:37606 19 - piwi-interacting RNA cluster 102 other PIRC102 piwi-interacting RNA cluster 102 O - 20120318 -9606 100313877 PIRC106 - - HGNC:37610 22 - piwi-interacting RNA cluster 106 other PIRC106 piwi-interacting RNA cluster 106 O - 20120318 -9606 100313878 PIRC108 - - HGNC:37612 22 - piwi-interacting RNA cluster 108 other PIRC108 piwi-interacting RNA cluster 108 O - 20120318 -9606 100313879 PIRC110 - - HGNC:37614 22 - piwi-interacting RNA cluster 110 other PIRC110 piwi-interacting RNA cluster 110 O - 20120318 -9606 100313880 PIRC113 - - HGNC:37617 X - piwi-interacting RNA cluster 113 other PIRC113 piwi-interacting RNA cluster 113 O - 20120318 -9606 100313881 PIRC114 - - HGNC:37618 X - piwi-interacting RNA cluster 114 other PIRC114 piwi-interacting RNA cluster 114 O - 20120318 -9606 100313884 MIR548H4 - MIR548H-4|MIRN548H4|hsa-mir-548h-4 HGNC:35345|miRBase:MI0006414 8 - microRNA 548h-4 miscRNA MIR548H4 microRNA 548h-4 O - 20121230 -9606 100313886 MIR2116 - - HGNC:37310|miRBase:MI0010635 15 - microRNA 2116 miscRNA MIR2116 microRNA 2116 O - 20121230 -9606 100313887 MIR2277 - - HGNC:37314|miRBase:MI0011284 5 - microRNA 2277 miscRNA MIR2277 microRNA 2277 O - 20121230 -9606 100313888 PIRC101 - - HGNC:37605 19 - piwi-interacting RNA cluster 101 other PIRC101 piwi-interacting RNA cluster 101 O - 20120318 -9606 100313890 PIRC34 - - HGNC:37538 7 - piwi-interacting RNA cluster 34 other PIRC34 piwi-interacting RNA cluster 34 O - 20120318 -9606 100313891 PIRC83 - - HGNC:37587 16 - piwi-interacting RNA cluster 83 other PIRC83 piwi-interacting RNA cluster 83 O - 20120318 -9606 100313892 MIR761 - hsa-mir-761 HGNC:37305|miRBase:MI0003941 1 - microRNA 761 miscRNA MIR761 microRNA 761 O - 20121230 -9606 100313893 PIRC28 - - HGNC:37532 6 - piwi-interacting RNA cluster 28 other PIRC28 piwi-interacting RNA cluster 28 O - 20120318 -9606 100313894 PIRC88 - - HGNC:37592 16 - piwi-interacting RNA cluster 88 other PIRC88 piwi-interacting RNA cluster 88 O - 20120318 -9606 100313895 MIR548F4 - MIR548F-4|MIRN548F4|hsa-mir-548f-4 HGNC:35308|miRBase:MI0006377 7 7q35 microRNA 548f-4 miscRNA MIR548F4 microRNA 548f-4 O - 20121230 -9606 100313896 MIR320D1 - MIR320D-1|MIRN320D1 HGNC:35386|miRBase:MI0008190 13 13q14.11 microRNA 320d-1 miscRNA MIR320D1 microRNA 320d-1 O - 20121230 -9606 100313897 PIRC11 - - HGNC:37515 3 - piwi-interacting RNA cluster 11 other PIRC11 piwi-interacting RNA cluster 11 O - 20120318 -9606 100313898 PIRC40 - - HGNC:37544 9 - piwi-interacting RNA cluster 40 other PIRC40 piwi-interacting RNA cluster 40 O - 20120318 -9606 100313899 PIRC61 - - HGNC:37565 15 - piwi-interacting RNA cluster 61 other PIRC61 piwi-interacting RNA cluster 61 O - 20120318 -9606 100313900 PIRC91 - - HGNC:37595 17 - piwi-interacting RNA cluster 91 other PIRC91 piwi-interacting RNA cluster 91 O - 20120318 -9606 100313901 PIRC103 - - HGNC:37607 20 - piwi-interacting RNA cluster 103 other PIRC103 piwi-interacting RNA cluster 103 O - 20120318 -9606 100313905 PIRC3 - - HGNC:37507 1 - piwi-interacting RNA cluster 3 other PIRC3 piwi-interacting RNA cluster 3 O - 20120318 -9606 100313906 PIRC18 - - HGNC:37522 4 - piwi-interacting RNA cluster 18 other PIRC18 piwi-interacting RNA cluster 18 O - 20120318 -9606 100313907 PIRC27 - - HGNC:37531 6 - piwi-interacting RNA cluster 27 other PIRC27 piwi-interacting RNA cluster 27 O - 20120318 -9606 100313908 PIRC44 - - HGNC:37548 9 - piwi-interacting RNA cluster 44 other PIRC44 piwi-interacting RNA cluster 44 O - 20120318 -9606 100313909 PIRC59 - - HGNC:37563 14 - piwi-interacting RNA cluster 59 other PIRC59 piwi-interacting RNA cluster 59 O - 20120318 -9606 100313910 PIRC69 - - HGNC:37573 15 - piwi-interacting RNA cluster 69 other PIRC69 piwi-interacting RNA cluster 69 O - 20120318 -9606 100313911 PIRC86 - - HGNC:37590 16 - piwi-interacting RNA cluster 86 other PIRC86 piwi-interacting RNA cluster 86 O - 20120318 -9606 100313912 PIRC100 - - HGNC:37604 19 - piwi-interacting RNA cluster 100 other PIRC100 piwi-interacting RNA cluster 100 O - 20120318 -9606 100313913 PIRC109 - - HGNC:37613 22 - piwi-interacting RNA cluster 109 other PIRC109 piwi-interacting RNA cluster 109 O - 20120318 -9606 100313914 MIR548J - MIRN548J|hsa-mir-548j HGNC:35276|miRBase:MI0006345 22 22q12.1 microRNA 548j miscRNA MIR548J microRNA 548j O - 20121230 -9606 100313915 PIRC8 - - HGNC:37512 1 - piwi-interacting RNA cluster 8 other PIRC8 piwi-interacting RNA cluster 8 O - 20120318 -9606 100313916 PIRC21 - - HGNC:37525 5 - piwi-interacting RNA cluster 21 other PIRC21 piwi-interacting RNA cluster 21 O - 20120318 -9606 100313917 PIRC41 - - HGNC:37545 9 - piwi-interacting RNA cluster 41 other PIRC41 piwi-interacting RNA cluster 41 O - 20120318 -9606 100313918 PIRC58 - - HGNC:37562 13 - piwi-interacting RNA cluster 58 other PIRC58 piwi-interacting RNA cluster 58 O - 20120318 -9606 100313919 PIRC75 - - HGNC:37579 15 - piwi-interacting RNA cluster 75 other PIRC75 piwi-interacting RNA cluster 75 O - 20120318 -9606 100313920 PIRC92 - - HGNC:37596 17 - piwi-interacting RNA cluster 92 other PIRC92 piwi-interacting RNA cluster 92 O - 20120318 -9606 100313921 MIR548E - MIRN548E|hsa-mir-548e HGNC:35275|miRBase:MI0006344 10 10q25.2 microRNA 548e miscRNA MIR548E microRNA 548e O - 20121230 -9606 100313923 MIR449C - - HGNC:37302|miRBase:MI0003823 5 - microRNA 449c miscRNA MIR449C microRNA 449c O - 20121230 -9606 100313924 PIRC2 - - HGNC:37506 1 - piwi-interacting RNA cluster 2 other PIRC2 piwi-interacting RNA cluster 2 O - 20120318 -9606 100313925 PIRC13 - - HGNC:37517 3 - piwi-interacting RNA cluster 13 other PIRC13 piwi-interacting RNA cluster 13 O - 20120318 -9606 100313926 PIRC19 - - HGNC:37523 4 - piwi-interacting RNA cluster 19 other PIRC19 piwi-interacting RNA cluster 19 O - 20120318 -9606 100313927 PIRC29 - - HGNC:37533 7 - piwi-interacting RNA cluster 29 other PIRC29 piwi-interacting RNA cluster 29 O - 20120318 -9606 100313928 PIRC36 - - HGNC:37540 9 - piwi-interacting RNA cluster 36 other PIRC36 piwi-interacting RNA cluster 36 O - 20120318 -9606 100313929 PIRC49 - - HGNC:37553 10 - piwi-interacting RNA cluster 49 other PIRC49 piwi-interacting RNA cluster 49 O - 20120318 -9606 100313930 PIRC57 - - HGNC:37561 12 - piwi-interacting RNA cluster 57 other PIRC57 piwi-interacting RNA cluster 57 O - 20120318 -9606 100313931 PIRC68 - - HGNC:37572 15 - piwi-interacting RNA cluster 68 other PIRC68 piwi-interacting RNA cluster 68 O - 20120318 -9606 100313932 PIRC74 - - HGNC:37578 15 - piwi-interacting RNA cluster 74 other PIRC74 piwi-interacting RNA cluster 74 O - 20120318 -9606 100313933 PIRC82 - - HGNC:37586 16 - piwi-interacting RNA cluster 82 other PIRC82 piwi-interacting RNA cluster 82 O - 20120318 -9606 100313934 PIRC93 - - HGNC:37597 17 - piwi-interacting RNA cluster 93 other PIRC93 piwi-interacting RNA cluster 93 O - 20120318 -9606 100313935 PIRC95 - - HGNC:37599 17 - piwi-interacting RNA cluster 95 other PIRC95 piwi-interacting RNA cluster 95 O - 20120318 -9606 100313936 PIRC105 - - HGNC:37609 21 - piwi-interacting RNA cluster 105 other PIRC105 piwi-interacting RNA cluster 105 O - 20120318 -9606 100313937 PIRC111 - - HGNC:37615 22 - piwi-interacting RNA cluster 111 other PIRC111 piwi-interacting RNA cluster 111 O - 20120318 -9606 100313938 MIR548G - MIRN548G|hsa-mir-548g HGNC:35326|miRBase:MI0006395 4 - microRNA 548g miscRNA MIR548G microRNA 548g O - 20121230 -9606 100313942 LOC100313942 - - - 14 - transmembrane protein 92 pseudogene pseudo - - - - 20121230 -9606 100313948 BRV2 - - MIM:613106 22 22q12 Vertigo, benign recurrent, 2 unknown - - - - 20120622 -9606 100313962 RFKP1 - - HGNC:39181 1 1q riboflavin kinase pseudogene 1 pseudo RFKP1 riboflavin kinase pseudogene 1 O - 20121230 -9606 100313968 LOC100313968 - - - 22 22q riboflavin kinase pseudogene pseudo - - - - 20121230 -9606 100316847 GLM8 - - MIM:613033 5 5p15.33 Glioma susceptibility 8 unknown - - - - 20120622 -9606 100316867 ARF4P5 - - HGNC:37629 1 1p31.1 ADP-ribosylation factor 4 pseudogene 5 pseudo ARF4P5 ADP-ribosylation factor 4 pseudogene 5 O - 20121230 -9606 100316868 HOTTIP - HOXA-AS6|HOXA13-AS1|NCRNA00213 HGNC:37461|MIM:614060 7 7p15.2 HOXA distal transcript antisense RNA miscRNA HOTTIP HOXA distal transcript antisense RNA O - 20121230 -9606 100316904 SAP25 - - HGNC:41908|Ensembl:ENSG00000205307 7 7q22.1 Sin3A-associated protein, 25kDa protein-coding SAP25 Sin3A-associated protein, 25kDa O 25 kDa Sin3-associated polypeptide|Sin3 corepressor complex subunit SAP25|histone deacetylase complex subunit SAP25|sin3-associated polypeptide, 25kDa|sin3A-binding protein 25 20121230 -9606 100322878 SLEB14 - - MIM:613145 1 1q21-q23 Systemic lupus erythematosus, susceptiblity to, 14 unknown - - - - 20120622 -9606 100322879 SPG45 - - HGNC:35431|MIM:613162 10 10q24.3-q25.1 spastic paraplegia 45 (autosomal recessive) unknown SPG45 spastic paraplegia 45 (autosomal recessive) O - 20120622 -9606 100327036 PPP2R2DP1 - - HGNC:44544 3 3p protein phosphatase 2, regulatory subunit B, delta pseudogene 1 pseudo PPP2R2DP1 protein phosphatase 2, regulatory subunit B, delta pseudogene 1 O - 20121230 -9606 100328982 LOC100328982 - - - 1 - eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa pseudogene pseudo - - - - 20121230 -9606 100329108 GCSHP5 - - HGNC:44195 1 - glycine cleavage system protein H pseudogene 5 pseudo GCSHP5 glycine cleavage system protein H pseudogene 5 O - 20121230 -9606 100329109 GCSHP3 - - HGNC:43929 2 - glycine cleavage system protein H (aminomethyl carrier) pseudogene 3 pseudo GCSHP3 glycine cleavage system protein H (aminomethyl carrier) pseudogene 3 O - 20121230 -9606 100329129 LOC100329129 - - - 5 5q35.3 proteolipid protein 2 (colonic epithelium-enriched) pseudogene pseudo - - - - 20121230 -9606 100329135 TRPC5OS hCG_1798305 TRPC5-AS1 HGNC:40593 X - TRPC5 opposite strand protein-coding TRPC5OS TRPC5 opposite strand O TRPC5 antisense RNA 1 (non-protein coding)|uncharacterized protein LOC100288395 20121230 -9606 100329167 AAA1 - AAA MIM:100070 19 19q13 aortic aneurysm, familial abdominal 1 unknown - - - - 20120630 -9606 100329168 LVG2 - - MIM:606460 6 6q21 longevity 2 unknown - - - - 20120622 -9606 100329169 CRCS9 - - MIM:612590 16 16q22.1 colorectal cancer, susceptibility to, 9 unknown - - - - 20120719 -9606 100329170 SCZD13 - - MIM:613025 15 15q13 schizophrenia 13 unknown - - - - 20120622 -9606 100335030 LOC100335030 - - - 12 12q13.12 FGFR1 oncogene partner 2 pseudogene pseudo - - - - 20121230 -9606 100337589 FMO7P - - HGNC:32208 1 1q24.1 flavin containing monooxygenase 7 pseudogene pseudo FMO7P flavin containing monooxygenase 7 pseudogene O - 20121230 -9606 100337590 FMO11P - - HGNC:32212 1 1q24.1 flavin containing monooxygenase 11, pseudogene pseudo FMO11P flavin containing monooxygenase 11, pseudogene O - 20121230 -9606 100337591 SNORA70F - U70F HGNC:34358 2 - small nucleolar RNA, H/ACA box 70F snoRNA SNORA70F small nucleolar RNA, H/ACA box 70F O - 20121230 -9606 100337616 CSN1S2BP - CSN1S2B HGNC:20227 4 4q13.3 casein alpha s2-like B, pseudogene pseudo CSN1S2BP casein alpha s2-like B, pseudogene O - 20121230 -9606 100337622 DDX11L4 - - HGNC:37105 6 6p25.3 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 4 pseudo DDX11L4 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 4 O - 20120720 -9606 100337646 CT45B1P - - HGNC:33580 5 5q21 cancer/testis antigen family 45, member B1 pseudogene pseudo CT45B1P cancer/testis antigen family 45, member B1 pseudogene O - 20121230 -9606 100359393 SCA30 - - HGNC:33445|MIM:613371 4 4q34.3-q35.1 spinocerebellar ataxia 30 unknown SCA30 spinocerebellar ataxia 30 O - 20120318 -9606 100359394 LINC00102 - NCRNA00102 HGNC:30470 X|Y Xp22.33 and Yp11.31 long intergenic non-protein coding RNA 102 miscRNA LINC00102 long intergenic non-protein coding RNA 102 O - 20121230 -9606 100359395 DFNA58 - - HGNC:34029 2 2p21-p12 deafness, autosomal dominant 58 unknown DFNA58 deafness, autosomal dominant 58 O - 20120318 -9606 100359396 HSPD1P11 - HSPD1-11P HGNC:35142 5 5q15 heat shock 60kDa protein 1 (chaperonin) pseudogene 11 pseudo HSPD1P11 heat shock 60kDa protein 1 (chaperonin) pseudogene 11 O - 20121230 -9606 100359397 HSPD1P18 - HSPD1-1P HGNC:35136 5 5q31.1 heat shock 60kDa protein 1 (chaperonin) pseudogene 18 pseudo HSPD1P18 heat shock 60kDa protein 1 (chaperonin) pseudogene 18 O - 20121230 -9606 100359399 DFNB85 - - HGNC:37053|MIM:613392 17 17p12-q11.2 deafness, autosomal recessive 85 unknown DFNB85 deafness, autosomal recessive 85 O - 20120622 -9606 100359400 DFNB83 - - HGNC:37051|MIM:613685 9 9p23-p21.2 deafness, autosomal recessive 83 unknown DFNB83 deafness, autosomal recessive 83 O - 20120622 -9606 100359401 MYP17 - MYP4 HGNC:37047|MIM:608367 7 7p15 myopia 17 unknown MYP17 myopia 17 O - 20120622 -9606 100359402 SPG41 - - HGNC:34382|MIM:613364 11 11p14.1-p11.2 spastic paraplegia 41 (autosomal dominant) unknown SPG41 spastic paraplegia 41 (autosomal dominant) O - 20120318 -9606 100359403 PARK16 - - HGNC:37450|MIM:613164 1 1q32 Parkinson disease 16 (susceptibility) unknown PARK16 Parkinson disease 16 (susceptibility) O - 20120622 -9606 100359406 MYP18 - - HGNC:37048|MIM:255500 14 14q22.1-q24.2 myopia 18 (high grade, autosomal recessive) unknown MYP18 myopia 18 (high grade, autosomal recessive) O - 20120622 -9606 100359407 MYP14 - - HGNC:35439|MIM:610320 1 1p36 myopia 14 unknown MYP14 myopia 14 O - 20120622 -9606 100379132 SNORA70G - U70G HGNC:34359 12 12q14 small nucleolar RNA, H/ACA box 70G snoRNA SNORA70G small nucleolar RNA, H/ACA box 70G O - 20121230 -9606 100379141 SNORA70D - U70D HGNC:34356 16 16q22.3 small nucleolar RNA, H/ACA box 70D snoRNA SNORA70D small nucleolar RNA, H/ACA box 70D O - 20121230 -9606 100379142 NCLP2 - bA85L21.1 HGNC:35473 X Xq26.3 nucleolin pseudogene 2 pseudo NCLP2 nucleolin pseudogene 2 O - 20121230 -9606 100379174 MACROD2-AS1 RP11-318C17.1 NCRNA00186 HGNC:37193 20 20p12.1 MACROD2 antisense RNA 1 miscRNA MACROD2-AS1 MACROD2 antisense RNA 1 O - 20121230 -9606 100379198 ECT - BECTS MIM:117100 11 11p13 centralopathic epilepsy unknown - - - - 20120622 -9606 100379199 HRM2 - - MIM:139450 1 1q21.3 hair, curly unknown - - - - 20120913 -9606 100379200 SLEB15 - - MIM:300809 X Xq28 Systemic lupus erthematosus, susceptibility to, 15 unknown - - - - 20120622 -9606 100379201 SPAX3 - ARSAL MIM:611390 2 2q33-q34 Ataxia, spastic, 3, autosomal recessive unknown - - - - 20120622 -9606 100379202 DUP5P13 - C5DUPp13 MIM:613174 5 5p13 Chromosome 5p13 duplication syndrome unknown - - - - 20120622 -9606 100379203 DUP17P13.3 - C17DUPp13.3 MIM:613215 17 17p13.3 Chromosome 17p13.3 duplication syndrome unknown - - - - 20120622 -9606 100379215 QTV - - MIM:610141 1 1q23.3 QT interval, variation in unknown - - - - 20120622 -9606 100379216 FGQTL2 - BWQTL1 MIM:613219 7 7p15-p13 Fasting plasma glucose level QTL2 unknown - - - - 20120622 -9606 100379217 FGQTL3 - - MIM:613233 11 11q21-q22 Fasting plasma glucose level QTL3 unknown - - - - 20120622 -9606 100379218 SPDA3 - - MIM:613238 2 2q36.1-q36.3 Spondylarthropathy, susceptibility to, 3 unknown - - - - 20120622 -9606 100379220 TMED11P - - HGNC:35401 4 4p16.3 transmembrane emp24 protein transport domain containing 11, pseudogene pseudo TMED11P transmembrane emp24 protein transport domain containing 11, pseudogene O - 20121230 -9606 100379224 LOC100379224 - - - 19 19q13.2 uncharacterized LOC100379224 miscRNA - - - - 20121230 -9606 100379236 LOC100379236 - - - Y - patatin-like phospholipase domain containing 4 pseudogene 1 pseudo - - - - 20121230 -9606 100379249 BOK-AS1 - BOK-AS|BOKAS|NAToB|NCRNA00151 HGNC:35125 2 2q37.3 BOK antisense RNA 1 miscRNA BOK-AS1 BOK antisense RNA 1 O - 20121230 -9606 100379250 SNORA70E - U70E HGNC:34357 11 - small nucleolar RNA, H/ACA box 70E snoRNA SNORA70E small nucleolar RNA, H/ACA box 70E O - 20121230 -9606 100379251 NPPA-AS1 - NPPA-AS|NPPAAS HGNC:37635 1 1p36.21 NPPA antisense RNA 1 miscRNA NPPA-AS1 NPPA antisense RNA 1 O - 20121230 -9606 100379287 RNY4P6 - - HGNC:34055 11 11q23.3 RNA, Ro-associated Y4 pseudogene 6 pseudo RNY4P6 RNA, Ro-associated Y4 pseudogene 6 O - 20121230 -9606 100379288 RNY4P11 - - HGNC:34061 20 20p11.23 RNA, Ro-associated Y4 pseudogene 11 pseudo RNY4P11 RNA, Ro-associated Y4 pseudogene 11 O - 20121021 -9606 100379290 LOC100379290 - - - 2 2p13 transmembrane and coiled-coil domain family 1 pseudogene pseudo - - - - 20121230 -9606 100379291 RNY4P15 - - HGNC:34065 2 - RNA, Ro-associated Y4 pseudogene 15 pseudo RNY4P15 RNA, Ro-associated Y4 pseudogene 15 O - 20121021 -9606 100379295 RNY4P8 - - HGNC:34057 17 17q21.2 RNA, Ro-associated Y4 pseudogene 8 pseudo RNY4P8 RNA, Ro-associated Y4 pseudogene 8 O - 20121230 -9606 100379296 RNY4P13 - - HGNC:34063 17 17q11.2 RNA, Ro-associated Y4 pseudogene 13 pseudo RNY4P13 RNA, Ro-associated Y4 pseudogene 13 O - 20121230 -9606 100379297 RNY4P4 - - HGNC:34050 3 3q22.3 RNA, Ro-associated Y4 pseudogene 4 pseudo RNY4P4 RNA, Ro-associated Y4 pseudogene 4 O - 20121230 -9606 100379298 RNY4P18 - - HGNC:34068 9 9q31.3 RNA, Ro-associated Y4 pseudogene 18 pseudo RNY4P18 RNA, Ro-associated Y4 pseudogene 18 O - 20121230 -9606 100379299 RNY4P5 - - HGNC:34052 8 8q24.13 RNA, Ro-associated Y4 pseudogene 5 pseudo RNY4P5 RNA, Ro-associated Y4 pseudogene 5 O - 20121230 -9606 100379300 RNY4P9 - - HGNC:34058 13 13q14.3 RNA, Ro-associated Y4 pseudogene 9 pseudo RNY4P9 RNA, Ro-associated Y4 pseudogene 9 O - 20121021 -9606 100379323 ERVW-2 - ERVWE2|NTrenv HGNC:37653 X Xq22.3 endogenous retrovirus group W, member 2 unknown ERVW-2 endogenous retrovirus group W, member 2 O - 20121017 -9606 100379329 RNY4P12 - - HGNC:34062 11 11q23.3 RNA, Ro-associated Y4 pseudogene 12 pseudo RNY4P12 RNA, Ro-associated Y4 pseudogene 12 O - 20120720 -9606 100379345 MIR181A2HG - - HGNC:37188 9 9q33.3 MIR181A2 host gene (non-protein coding) miscRNA MIR181A2HG MIR181A2 host gene (non-protein coding) O - 20121230 -9606 100379378 RNY4P20 - - HGNC:34070 6 6q25.1 RNA, Ro-associated Y4 pseudogene 20 pseudo RNY4P20 RNA, Ro-associated Y4 pseudogene 20 O - 20121230 -9606 100379564 RNY4P17 - - HGNC:34067 4 4q32.3 RNA, Ro-associated Y4 pseudogene 17 pseudo RNY4P17 RNA, Ro-associated Y4 pseudogene 17 O - 20121230 -9606 100379571 BACE1-AS - BACE1-AS1|BACE1AS|FJ573250|NCRNA00177 HGNC:37125|MIM:614263 11 11q23.3 BACE1 antisense RNA miscRNA BACE1-AS BACE1 antisense RNA O - 20121230 -9606 100379584 RNY4P14 - - HGNC:34064 13 13q13.3 RNA, Ro-associated Y4 pseudogene 14 pseudo RNY4P14 RNA, Ro-associated Y4 pseudogene 14 O - 20121230 -9606 100379592 RNY4P10 - - HGNC:34060 6 6p21.3 RNA, Ro-associated Y4 pseudogene 10 pseudo RNY4P10 RNA, Ro-associated Y4 pseudogene 10 O - 20121230 -9606 100379623 LARP1P1 - HCG10P|dJ221C16.7 HGNC:23183 6 6p22 La ribonucleoprotein domain family, member 1 pseudogene 1 pseudo LARP1P1 La ribonucleoprotein domain family, member 1 pseudogene 1 O - 20121230 -9606 100379658 RNY5P5 - - HGNC:34086 6 6p22.2 RNA, Ro-associated Y5 pseudogene 5 pseudo RNY5P5 RNA, Ro-associated Y5 pseudogene 5 O - 20121230 -9606 100379661 GRIK1-AS2 - C21orf41|NCRNA00258 HGNC:1282 21 21q22.11 GRIK1 antisense RNA 2 miscRNA GRIK1-AS2 GRIK1 antisense RNA 2 O - 20121230 -9606 100379663 RNY5P6 - - HGNC:34087 8 8p11.21 RNA, Ro-associated Y5 pseudogene 6 pseudo RNY5P6 RNA, Ro-associated Y5 pseudogene 6 O - 20121230 -9606 100379664 RNY5P3 - - HGNC:34084 3 3q26.2 RNA, Ro-associated Y5 pseudogene 3 pseudo RNY5P3 RNA, Ro-associated Y5 pseudogene 3 O - 20121230 -9606 100379666 RNY5P1 - - HGNC:34082 1 1p34.3 RNA, Ro-associated Y5 pseudogene 1 pseudo RNY5P1 RNA, Ro-associated Y5 pseudogene 1 O - 20121230 -9606 100379667 NEK2P2 - - HGNC:37816 22 22q11.1 NEK2 pseudogene 2 pseudo NEK2P2 NEK2 pseudogene 2 O - 20121230 -9606 100380271 RNY5P4 - - HGNC:34085 4 4q28.2 RNA, Ro-associated Y5 pseudogene 4 pseudo RNY5P4 RNA, Ro-associated Y5 pseudogene 4 O - 20121230 -9606 100380272 NDUFB1P2 - - HGNC:37815 1 1q41 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 pseudogene 2 pseudo NDUFB1P2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 pseudogene 2 O - 20121230 -9606 100380873 FECD3 - FCD2 MIM:613267 18 18q21.2-q21.3 Corneal dystrophy, Fuchs endothelial, 3 unknown - - - - 20120622 -9606 100380874 FECD5 - FCD3 MIM:613269 5 5q33.1-q35.2 Corneal dystrophy, Fuchs endothelial, 5 unknown - - - - 20120622 -9606 100380875 FECD7 - FCD4 MIM:613271 9 9p24.1-p22.1 Corneal dystrophy, Fuchs endothelial, 7 unknown - - - - 20120622 -9606 100380876 FLD1 - - MIM:613282 22 22q13 Fatty liver disease 1, susceptiblity to unknown - - - - 20120622 -9606 100380878 RNY5P8 - - HGNC:34089 13 13q33.1 RNA, Ro-associated Y5 pseudogene 8 pseudo RNY5P8 RNA, Ro-associated Y5 pseudogene 8 O - 20121230 -9606 100380945 ZNF848P - - HGNC:34387 17 - zinc finger protein 848, pseudogene pseudo ZNF848P zinc finger protein 848, pseudogene O - 20121230 -9606 100381178 TMPRSS11CP - - HGNC:31934 4 - transmembrane protease, serine 11C, pseudogene pseudo TMPRSS11CP transmembrane protease, serine 11C, pseudogene O - 20121230 -9606 100381202 NEK2P4 - - HGNC:37818 2 2q21.1 NEK2 pseudogene 4 pseudo NEK2P4 NEK2 pseudogene 4 O - 20121230 -9606 100381203 GLUD1P2 - GLUDP2 HGNC:4337 10 10q11.2 glutamate dehydrogenase 1 pseudogene 2 pseudo GLUD1P2 glutamate dehydrogenase 1 pseudogene 2 O - 20121209 -9606 100381204 HCHGQ1 - - MIM:609319 6 6q23 Hematocrit/hemoglobin quantitative trait locus 1 unknown - - - - 20120622 -9606 100381205 HCHGQ2 - - MIM:609320 9 9q Hematocrit/hemoglobin quantitative trait locus 2 unknown - - - - 20120622 -9606 100381206 HCHGQ3 - - MIM:613284 22 22q12-q13 Hematocrit/hemoglobin quantitative trait locus 3 unknown - - - - 20120622 -9606 100381207 CIHL - - MIM:613290 6 6p22.3 hearing loss, cisplatin-induced, susceptibility to unknown - - - - 20120622 -9606 100381208 RNY5P2 - - HGNC:34083 2 2q33.1 RNA, Ro-associated Y5 pseudogene 2 pseudo RNY5P2 RNA, Ro-associated Y5 pseudogene 2 O - 20120720 -9606 100381210 CAMPD1 - - MIM:114200 3 3q11.2-q13.12 Camptodactyly 1 unknown - - - - 20120622 -9606 100381211 ARCODS - - MIM:602483 - - Ariculocondylar syndrome unknown - - - - 20120909 -9606 100381215 DYNLT3P2 - - HGNC:37081 2 - dynein, light chain, Tctex-type 3 pseudogene 2 pseudo DYNLT3P2 dynein, light chain, Tctex-type 3 pseudogene 2 O - 20121230 -9606 100381270 ZBED6 - MGR HGNC:33273|MIM:613512|Ensembl:ENSG00000257315|Vega:OTTHUMG00000170422 1 1q32.1 zinc finger, BED-type containing 6 protein-coding ZBED6 zinc finger, BED-type containing 6 O zinc finger BED domain-containing protein 6 20121230 -9606 100384884 IGHV1OR15-5 - IGHV1OR155 HGNC:5567|IMGT/GENE-DB:IGHV1/OR15-5 15 - immunoglobulin heavy variable 1/OR15-5 (non-functional) pseudo IGHV1OR15-5 immunoglobulin heavy variable 1/OR15-5 (non-functional) O - 20121230 -9606 100384885 LOC100384885 - - - 2 2q36.1 related RAS viral (r-ras) oncogene homolog 2 pseudogene pseudo - - - - 20121230 -9606 100415893 DUPXQ28 - CXq28 MIM:300815 X Xq28 Chromosome Xq28 duplication syndrome unknown - - - - 20120622 -9606 100415894 GLM5 - - MIM:613030 9 9p21.3 Glioma susceptibility 5 unknown - - - - 20120622 -9606 100415895 GLM6 - - MIM:613031 20 20q13.33 Glioma susceptibility 6 unknown - - - - 20120622 -9606 100415896 ASRT8 - - MIM:613207 9 9q33 Asthma-related traits, susceptibility to, 8 unknown - - - - 20120622 -9606 100415903 HWE1 - - MIM:613339 10 10q21.3-q22.3 Epilepsy, hot water, 1 unknown - - - - 20120622 -9606 100415904 HWE2 - - MIM:613340 4 4q24-q28 Epilepsy, hot water, 2 unknown - - - - 20120622 -9606 100415941 DEL17Q23.1Q23.2 - C17DELq23.1q23.2 MIM:613355 17 17q23.1-q23.2 Chromosome 17q23.1-q23.2 deletion syndrome unknown - - - - 20120622 -9606 100415942 DEL2P21 - C2DELp21 MIM:606407 2 2p21 Hypotonia-cystinuria syndrome unknown - - - - 20120622 -9606 100415943 MGR9 - - MIM:609670 11 11q24 Migraine with aura, susceptibility to, 9 unknown - - - - 20120622 -9606 100418484 LOC100418484 - - - - - KAT8 regulatory NSL complex subunit 1 pseudogene pseudo - - - - 20120318 -9606 100418485 LOC100418485 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100418486 LOC100418486 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100418487 LOC100418487 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100418488 LOC100418488 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100418489 LOC100418489 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100418490 LOC100418490 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100418491 LOC100418491 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100418492 LOC100418492 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100418493 LOC100418493 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100418494 LOC100418494 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100418495 LOC100418495 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100418496 LOC100418496 - - - - - fibrosin-like 1 pseudogene pseudo - - - - 20120318 -9606 100418497 LOC100418497 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418498 LOC100418498 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418499 LOC100418499 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418500 LOC100418500 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418501 LOC100418501 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418502 LOC100418502 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418503 LOC100418503 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418504 LOC100418504 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418505 LOC100418505 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418506 LOC100418506 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418507 LOC100418507 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418508 LOC100418508 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418509 LOC100418509 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418510 LOC100418510 - - - - - MAS1 oncogene-like pseudogene pseudo - - - - 20120318 -9606 100418511 LOC100418511 - - - - - ribosomal protein SA pseudogene pseudo - - - - 20120318 -9606 100418512 LOC100418512 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100418513 LOC100418513 - - - - - lysophospholipase II pseudogene pseudo - - - - 20120318 -9606 100418514 LOC100418514 - - - - - ribosomal protein SA pseudogene pseudo - - - - 20120318 -9606 100418515 LOC100418515 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100418516 LOC100418516 - - - - - lysophospholipase II pseudogene pseudo - - - - 20120318 -9606 100418517 LOC100418517 - - - - - ribosomal protein SA pseudogene pseudo - - - - 20120318 -9606 100418518 LOC100418518 - - - - - ribosomal protein SA pseudogene pseudo - - - - 20120318 -9606 100418519 LOC100418519 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100418520 LOC100418520 - - - - - lysophospholipase II pseudogene pseudo - - - - 20120318 -9606 100418521 LOC100418521 - - - - - ribosomal protein SA pseudogene pseudo - - - - 20120318 -9606 100418522 LOC100418522 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100418523 LOC100418523 - - - - - lysophospholipase II pseudogene pseudo - - - - 20120318 -9606 100418524 LOC100418524 - - - - - ribosomal protein SA pseudogene pseudo - - - - 20120318 -9606 100418525 LOC100418525 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100418526 LOC100418526 - - - - - ribosomal protein SA pseudogene pseudo - - - - 20120318 -9606 100418527 LOC100418527 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100418528 LOC100418528 - - - - - ribosomal protein L7a pseudogene pseudo - - - - 20120318 -9606 100418529 LOC100418529 - - - - - ribosomal protein L13 pseudogene pseudo - - - - 20120318 -9606 100418530 LOC100418530 - - - - - ribosomal protein L15 pseudogene pseudo - - - - 20120318 -9606 100418531 LOC100418531 - - - - - ribosomal protein L7a pseudogene pseudo - - - - 20120318 -9606 100418532 LOC100418532 - - - - - ribosomal protein L13 pseudogene pseudo - - - - 20120318 -9606 100418533 LOC100418533 - - - - - ribosomal protein L15 pseudogene pseudo - - - - 20120318 -9606 100418534 LOC100418534 - - - - - ribosomal protein L7a pseudogene pseudo - - - - 20120318 -9606 100418535 LOC100418535 - - - - - ribosomal protein L15 pseudogene pseudo - - - - 20120318 -9606 100418536 LOC100418536 - - - - - ribosomal protein L7a pseudogene pseudo - - - - 20120318 -9606 100418537 LOC100418537 - - - - - ribosomal protein L13 pseudogene pseudo - - - - 20120318 -9606 100418538 LOC100418538 - - - - - ribosomal protein L15 pseudogene pseudo - - - - 20120318 -9606 100418539 LOC100418539 - - - - - ribosomal protein L7a pseudogene pseudo - - - - 20120318 -9606 100418540 LOC100418540 - - - - - ribosomal protein L15 pseudogene pseudo - - - - 20120318 -9606 100418541 LOC100418541 - - - - - ribosomal protein L7a pseudogene pseudo - - - - 20120318 -9606 100418542 LOC100418542 - - - - - ribosomal protein L13 pseudogene pseudo - - - - 20120318 -9606 100418543 LOC100418543 - - - - - ribosomal protein L15 pseudogene pseudo - - - - 20120318 -9606 100418544 LOC100418544 - - - - - ribosomal protein L7a pseudogene pseudo - - - - 20120318 -9606 100418545 LOC100418545 - - - - - ribosomal protein L15 pseudogene pseudo - - - - 20120318 -9606 100418546 LOC100418546 - - - - - zinc finger protein 70 pseudogene pseudo - - - - 20120318 -9606 100418547 LOC100418547 - - - - - zinc finger protein 93 pseudogene pseudo - - - - 20120318 -9606 100418548 LOC100418548 - - - - - zinc finger protein 70 pseudogene pseudo - - - - 20120318 -9606 100418549 LOC100418549 - - - - - zinc finger protein 93 pseudogene pseudo - - - - 20120318 -9606 100418550 LOC100418550 - - - - - zinc finger protein 93 pseudogene pseudo - - - - 20120318 -9606 100418551 LOC100418551 - - - - - zinc finger protein 70 pseudogene pseudo - - - - 20120318 -9606 100418552 LOC100418552 - - - - - zinc finger protein 93 pseudogene pseudo - - - - 20120318 -9606 100418553 LOC100418553 - - - - - zinc finger protein 70 pseudogene pseudo - - - - 20120318 -9606 100418554 LOC100418554 - - - - - zinc finger protein 93 pseudogene pseudo - - - - 20120318 -9606 100418555 LOC100418555 - - - - - zinc finger protein 70 pseudogene pseudo - - - - 20120318 -9606 100418556 LOC100418556 - - - - - zinc finger protein 70 pseudogene pseudo - - - - 20120318 -9606 100418558 LOC100418558 - - - - - dihydrofolate reductase pseudogene pseudo - - - - 20120318 -9606 100418559 LOC100418559 - - - - - dihydrofolate reductase pseudogene pseudo - - - - 20120318 -9606 100418560 LOC100418560 - - - - - dihydrofolate reductase pseudogene pseudo - - - - 20120318 -9606 100418561 LOC100418561 - - - - - ADP-ribosylation factor 3 pseudogene pseudo - - - - 20120318 -9606 100418562 LOC100418562 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100418563 LOC100418563 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100418564 LOC100418564 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100418565 LOC100418565 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100418566 LOC100418566 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100418567 LOC100418567 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100418571 LOC100418571 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100418572 LOC100418572 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100418573 LOC100418573 - - - - - dihydrofolate reductase-like 1 pseudogene pseudo - - - - 20120318 -9606 100418574 LOC100418574 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100418575 LOC100418575 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100418576 LOC100418576 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100418577 LOC100418577 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100418578 LOC100418578 - - - - - RAN, member RAS oncogene family pseudogene pseudo - - - - 20120318 -9606 100418579 LOC100418579 - - - - - RAN, member RAS oncogene family pseudogene pseudo - - - - 20120318 -9606 100418580 LOC100418580 - - - - - RAN, member RAS oncogene family pseudogene pseudo - - - - 20120318 -9606 100418581 LOC100418581 - - - - - RAN, member RAS oncogene family pseudogene pseudo - - - - 20120318 -9606 100418582 LOC100418582 - - - - - RAN, member RAS oncogene family pseudogene pseudo - - - - 20120318 -9606 100418583 LOC100418583 - - - - - mucin 4, cell surface associated pseudogene pseudo - - - - 20120318 -9606 100418584 LOC100418584 - - - - - mucin 4, cell surface associated pseudogene pseudo - - - - 20120318 -9606 100418585 LOC100418585 - - - - - mucin 4, cell surface associated pseudogene pseudo - - - - 20120318 -9606 100418586 LOC100418586 - - - - - N-ethylmaleimide-sensitive factor pseudogene pseudo - - - - 20120318 -9606 100418587 LOC100418587 - - - - - myosin, light chain 12B, regulatory pseudogene pseudo - - - - 20120318 -9606 100418588 LOC100418588 - - - - - myosin, light chain 12B, regulatory pseudogene pseudo - - - - 20120318 -9606 100418589 LOC100418589 - - - - - myosin, light chain 12B, regulatory pseudogene pseudo - - - - 20120318 -9606 100418590 LOC100418590 - - - - - myosin, light chain 12B, regulatory pseudogene pseudo - - - - 20120318 -9606 100418591 LOC100418591 - - - - - tigger transposable element derived 1 pseudogene pseudo - - - - 20120318 -9606 100418592 LOC100418592 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100418593 LOC100418593 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100418594 LOC100418594 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100418595 LOC100418595 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100418596 LOC100418596 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100418597 LOC100418597 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418598 LOC100418598 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418599 LOC100418599 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418600 LOC100418600 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418601 LOC100418601 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418602 LOC100418602 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418603 LOC100418603 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418604 LOC100418604 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418605 LOC100418605 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418606 LOC100418606 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418607 LOC100418607 - - - - - MHC class I polypeptide-related sequence B pseudogene pseudo - - - - 20120318 -9606 100418608 LOC100418608 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100418609 LOC100418609 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100418610 LOC100418610 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100418611 LOC100418611 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100418612 LOC100418612 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100418613 LOC100418613 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100418614 LOC100418614 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100418615 LOC100418615 - - - - - family with sequence similarity 8, member A1 pseudogene pseudo - - - - 20120318 -9606 100418616 LOC100418616 - - - - - family with sequence similarity 8, member A1 pseudogene pseudo - - - - 20120318 -9606 100418617 LOC100418617 - - - - - major histocompatibility complex, class I, B pseudogene pseudo - - - - 20120318 -9606 100418618 LOC100418618 - - - - - family with sequence similarity 8, member A1 pseudogene pseudo - - - - 20120318 -9606 100418619 LOC100418619 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418620 LOC100418620 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418621 LOC100418621 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418622 LOC100418622 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418623 LOC100418623 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418624 LOC100418624 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418625 LOC100418625 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418626 LOC100418626 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100418627 LOC100418627 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100418628 LOC100418628 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100418629 LOC100418629 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100418630 LOC100418630 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100418631 LOC100418631 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418632 LOC100418632 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418633 LOC100418633 - - - - - olfactory receptor, family 2, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100418634 LOC100418634 - - - - - olfactory receptor, family 2, subfamily G, member 6 pseudogene pseudo - - - - 20120318 -9606 100418635 LOC100418635 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418636 LOC100418636 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418637 LOC100418637 - - - - - olfactory receptor, family 2, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100418638 LOC100418638 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418639 LOC100418639 - - - - - olfactory receptor, family 2, subfamily Y, member 1 pseudogene pseudo - - - - 20120318 -9606 100418640 LOC100418640 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418641 LOC100418641 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418642 LOC100418642 - - - - - olfactory receptor, family 2, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100418643 LOC100418643 - - - - - olfactory receptor, family 2, subfamily G, member 6 pseudogene pseudo - - - - 20120318 -9606 100418644 LOC100418644 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418645 LOC100418645 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418646 LOC100418646 - - - - - olfactory receptor, family 2, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100418647 LOC100418647 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418648 LOC100418648 - - - - - olfactory receptor, family 2, subfamily Y, member 1 pseudogene pseudo - - - - 20120318 -9606 100418649 LOC100418649 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418650 LOC100418650 - - - - - olfactory receptor, family 2, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100418651 LOC100418651 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418652 LOC100418652 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418653 LOC100418653 - - - - - olfactory receptor, family 2, subfamily Y, member 1 pseudogene pseudo - - - - 20120318 -9606 100418654 LOC100418654 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418655 LOC100418655 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418656 LOC100418656 - - - - - olfactory receptor, family 2, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100418657 LOC100418657 - - - - - olfactory receptor, family 2, subfamily G, member 6 pseudogene pseudo - - - - 20120318 -9606 100418658 LOC100418658 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418659 LOC100418659 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418660 LOC100418660 - - - - - olfactory receptor, family 2, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100418661 LOC100418661 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418662 LOC100418662 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418663 LOC100418663 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418664 LOC100418664 - - - - - olfactory receptor, family 2, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100418665 LOC100418665 - - - - - olfactory receptor, family 2, subfamily G, member 6 pseudogene pseudo - - - - 20120318 -9606 100418666 LOC100418666 - - - - - olfactory receptor, family 2, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100418667 LOC100418667 - - - - - olfactory receptor, family 2, subfamily Y, member 1 pseudogene pseudo - - - - 20120318 -9606 100418668 LOC100418668 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418669 LOC100418669 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418670 LOC100418670 - - - - - olfactory receptor, family 2, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100418671 LOC100418671 - - - - - olfactory receptor, family 2, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100418672 LOC100418672 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418673 LOC100418673 - - - - - olfactory receptor, family 2, subfamily Y, member 1 pseudogene pseudo - - - - 20120318 -9606 100418674 LOC100418674 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418675 LOC100418675 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418676 LOC100418676 - - - - - olfactory receptor, family 2, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100418677 LOC100418677 - - - - - olfactory receptor, family 2, subfamily G, member 6 pseudogene pseudo - - - - 20120318 -9606 100418678 LOC100418678 - - - - - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100418679 LOC100418679 - - - - - olfactory receptor, family 2, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100418680 LOC100418680 - - - - - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100418681 LOC100418681 - - - - - olfactory receptor, family 2, subfamily Y, member 1 pseudogene pseudo - - - - 20120318 -9606 100418682 LOC100418682 - - - - - protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene pseudo - - - - 20120318 -9606 100418683 LOC100418683 - - - - - protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene pseudo - - - - 20120318 -9606 100418684 LOC100418684 - - - - - protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene pseudo - - - - 20120318 -9606 100418685 LOC100418685 - - - - - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418686 LOC100418686 - - - - - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418687 LOC100418687 - - - - - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100418688 LOC100418688 - - - - - N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene pseudo - - - - 20120318 -9606 100418689 LOC100418689 - - - - - N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene pseudo - - - - 20120318 -9606 100418690 LOC100418690 - - - - - N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene pseudo - - - - 20120318 -9606 100418691 LOC100418691 - - - - - N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene pseudo - - - - 20120318 -9606 100418692 LOC100418692 - - - - - N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene pseudo - - - - 20120318 -9606 100418693 LOC100418693 - - - - - protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene pseudo - - - - 20120318 -9606 100418694 LOC100418694 - - - - - protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene pseudo - - - - 20120318 -9606 100418696 LOC100418696 - - - 2 - axin 2 pseudogene pseudo - - - - 20121209 -9606 100418699 LOC100418699 - - - 2 - nebulin pseudogene pseudo - - - - 20120606 -9606 100418700 LOC100418700 - - - 4 - plectin pseudogene pseudo - - - - 20121230 -9606 100418701 LOC100418701 - - - 4 - talin 2 pseudogene pseudo - - - - 20121230 -9606 100418703 LOC100418703 - - - X|Y X;Y repetin pseudogene pseudo - - - - 20121209 -9606 100418705 LOC100418705 - - - 9 - KIAA1586 pseudogene pseudo - - - - 20121230 -9606 100418706 LOC100418706 - - - 9 - frataxin pseudogene pseudo - - - - 20121230 -9606 100418707 LOC100418707 - - - 5 - septin 7 pseudogene pseudo - - - - 20121230 -9606 100418708 CLUHP1 - KIAA0664P1 HGNC:38416 Y - clustered mitochondria (cluA/CLU1) homolog pseudogene 1 pseudo CLUHP1 clustered mitochondria (cluA/CLU1) homolog pseudogene 1 O - 20121209 -9606 100418709 CLUHP2 - KIAA0664P2 HGNC:38453 Y - clustered mitochondria (cluA/CLU1) homolog pseudogene 2 pseudo CLUHP2 clustered mitochondria (cluA/CLU1) homolog pseudogene 2 O - 20121209 -9606 100418710 LOC100418710 - - - 4 - KIAA1191 pseudogene pseudo - - - - 20121230 -9606 100418711 CLUHP4 - KIAA0664P4 HGNC:38470 4 - clustered mitochondria (cluA/CLU1) homolog pseudogene 4 pseudo CLUHP4 clustered mitochondria (cluA/CLU1) homolog pseudogene 4 O - 20121209 -9606 100418712 LOC100418712 - - - 3 - KIAA1328 pseudogene pseudo - - - - 20121230 -9606 100418713 LOC100418713 - - - 6 - stomatin pseudogene pseudo - - - - 20121230 -9606 100418714 LOC100418714 - - - 7 - septin 7 pseudogene pseudo - - - - 20121230 -9606 100418715 SEPT7P4 - - HGNC:38039 7 - septin 7 pseudogene 4 pseudo SEPT7P4 septin 7 pseudogene 4 O - 20121230 -9606 100418716 LOC100418716 - - - 7 - KIAA1468 pseudogene pseudo - - - - 20121230 -9606 100418718 SEPT7P5 - - HGNC:38041 7 - septin 7 pseudogene 5 pseudo SEPT7P5 septin 7 pseudogene 5 O - 20121230 -9606 100418719 LOC100418719 - - - 7 - KIAA0664 pseudogene pseudo - - - - 20121230 -9606 100418720 SEPT7P6 - - HGNC:38042 7 - septin 7 pseudogene 6 pseudo SEPT7P6 septin 7 pseudogene 6 O - 20121230 -9606 100418721 LOC100418721 - - - X - formin 2 pseudogene pseudo - - - - 20121230 -9606 100418722 LOC100418722 - - - 1 - KIAA1430 pseudogene pseudo - - - - 20121230 -9606 100418723 LOC100418723 - - - 1 - KIAA1429 pseudogene pseudo - - - - 20121230 -9606 100418724 CCNJP2 - - HGNC:37997 1 - cyclin J pseudogene 2 pseudo CCNJP2 cyclin J pseudogene 2 O - 20121230 -9606 100418727 LOC100418727 - - - 2 - nucleolin pseudogene pseudo - - - - 20121230 -9606 100418728 KRT8P40 - - HGNC:39874 2 - keratin 8 pseudogene 40 pseudo KRT8P40 keratin 8 pseudogene 40 O - 20121230 -9606 100418730 LOC100418730 - - - 12 - T-box 20 pseudogene pseudo - - - - 20121230 -9606 100418731 LOC100418731 - - - 12 - akirin 1 pseudogene pseudo - - - - 20121230 -9606 100418732 LOC100418732 - - - 12 - KIAA1586 pseudogene pseudo - - - - 20121230 -9606 100418733 LOC100418733 - - - 12 - KIAA0664 pseudogene pseudo - - - - 20121230 -9606 100418734 LOC100418734 - - - 12 - KIAA1586 pseudogene pseudo - - - - 20121230 -9606 100418735 SEPT7P8 - - HGNC:38044 19 - septin 7 pseudogene 8 pseudo SEPT7P8 septin 7 pseudogene 8 O - 20121230 -9606 100418736 GOLGA5P1 - - HGNC:43925 5 - golgin A5 pseudogene 1 pseudo GOLGA5P1 golgin A5 pseudogene 1 O - 20121230 -9606 100418737 KRT8P33 - - HGNC:39867 5 - keratin 8 pseudogene 33 pseudo KRT8P33 keratin 8 pseudogene 33 O - 20121230 -9606 100418738 LOC100418738 - - - Y - dynamin 1 pseudogene pseudo - - - - 20121230 -9606 100418739 DNM1P48 - - HGNC:38801 Y - DNM1 pseudogene 48 pseudo DNM1P48 DNM1 pseudogene 48 O - 20121209 -9606 100418740 PPP1R26P1 - KIAA0649P1 HGNC:42015 13 - protein phosphatase 1, regulatory subunit 26 pseudogene 1 pseudo PPP1R26P1 protein phosphatase 1, regulatory subunit 26 pseudogene 1 O - 20121230 -9606 100418742 LOC100418742 - - - 13 - KIAA0664 pseudogene pseudo - - - - 20121230 -9606 100418743 LOC100418743 - - - 4 - cyclin L2 pseudogene pseudo - - - - 20121230 -9606 100418744 KRT8P46 - - HGNC:39880 4 - keratin 8 pseudogene 46 pseudo KRT8P46 keratin 8 pseudogene 46 O - 20121230 -9606 100418745 CLUHP5 - KIAA0664P5 HGNC:38471 10 - clustered mitochondria (cluA/CLU1) homolog pseudogene 5 pseudo CLUHP5 clustered mitochondria (cluA/CLU1) homolog pseudogene 5 O - 20121230 -9606 100418747 KRT8P35 - - HGNC:39869 3 - keratin 8 pseudogene 35 pseudo KRT8P35 keratin 8 pseudogene 35 O - 20121230 -9606 100418748 KRT8P36 - - HGNC:39870 3 - keratin 8 pseudogene 36 pseudo KRT8P36 keratin 8 pseudogene 36 O - 20121230 -9606 100418750 KRT8P42 - - HGNC:39876 6 - keratin 8 pseudogene 42 pseudo KRT8P42 keratin 8 pseudogene 42 O - 20121230 -9606 100418751 GOLGA2P1 - - HGNC:31052 8 8q21.3 golgin A2 pseudogene 1 pseudo GOLGA2P1 golgin A2 pseudogene 1 O - 20121230 -9606 100418753 LOC100418753 - - - 17 - septin 7 pseudogene pseudo - - - - 20121230 -9606 100418754 LOC100418754 - - - 18 - KIAA0664 pseudogene pseudo - - - - 20121230 -9606 100418756 LOC100418756 - - - 16 - KIAA0664 pseudogene pseudo - - - - 20121230 -9606 100418759 LOC100418759 - - - X - myoneurin pseudogene pseudo - - - - 20121230 -9606 100418763 CCNT2P1 - - HGNC:39178 1 - cyclin T2 pseudogene 1 pseudo CCNT2P1 cyclin T2 pseudogene 1 O - 20121230 -9606 100418768 LOC100418768 - - - 14 - ataxin 3 pseudogene pseudo - - - - 20121230 -9606 100418769 KRT18P52 - - HGNC:37888 2 - keratin 18 pseudogene 52 pseudo KRT18P52 keratin 18 pseudogene 52 O - 20121230 -9606 100418770 LOC100418770 - - - 2 - keratin 18 pseudogene pseudo - - - - 20121230 -9606 100418774 PHBP4 - - HGNC:8916 2 2q21 prohibitin pseudogene 4 pseudo PHBP4 prohibitin pseudogene 4 O - 20121230 -9606 100418779 KRT3P1 - - HGNC:40019 12 - keratin 3 pseudogene 1 pseudo KRT3P1 keratin 3 pseudogene 1 O - 20121230 -9606 100418781 KRT8P39 - - HGNC:39873 12 - keratin 8 pseudogene 39 pseudo KRT8P39 keratin 8 pseudogene 39 O - 20121230 -9606 100418792 KRT18P54 - - HGNC:39425 4 - keratin 18 pseudogene 54 pseudo KRT18P54 keratin 18 pseudogene 54 O - 20121230 -9606 100418799 KRT8P38 - - HGNC:39872 10 - keratin 8 pseudogene 38 pseudo KRT8P38 keratin 8 pseudogene 38 O - 20121230 -9606 100418804 PHBP8 - - HGNC:39287 3 - prohibitin pseudogene 8 pseudo PHBP8 prohibitin pseudogene 8 O - 20121230 -9606 100418811 KRT8P34 - - HGNC:39868 17 - keratin 8 pseudogene 34 pseudo KRT8P34 keratin 8 pseudogene 34 O - 20121230 -9606 100418814 LOC100418814 - - - 7 - metadherin pseudogene pseudo - - - - 20121230 -9606 100418815 PHBP10 - - HGNC:39289 X - prohibitin pseudogene 10 pseudo PHBP10 prohibitin pseudogene 10 O - 20121230 -9606 100418819 IPO8P1 - - HGNC:41955 1 - importin 8 pseudogene 1 pseudo IPO8P1 importin 8 pseudogene 1 O - 20121230 -9606 100418820 PHBP12 - - HGNC:39291 1 - prohibitin pseudogene 12 pseudo PHBP12 prohibitin pseudogene 12 O - 20121230 -9606 100418822 LOC100418822 - - - 1 - atrophin 1 pseudogene pseudo - - - - 20121230 -9606 100418828 LOC100418828 - - - 12 - keratin 79 pseudogene pseudo - - - - 20121230 -9606 100418829 LOC100418829 - - - 12 - keratin 18 pseudogene pseudo - - - - 20121230 -9606 100418832 LOC100418832 - - - 19 - metadherin pseudogene pseudo - - - - 20121230 -9606 100418834 LOC100418834 - - - 19 - metadherin pseudogene pseudo - - - - 20121230 -9606 100418835 LOC100418835 - - - 19 - metadherin pseudogene pseudo - - - - 20121230 -9606 100418836 LOC100418836 - - - 19 - metadherin pseudogene pseudo - - - - 20121230 -9606 100418837 PHBP2 - - HGNC:8914 11 11p11.2 prohibitin pseudogene 2 pseudo PHBP2 prohibitin pseudogene 2 O - 20121230 -9606 100418843 PHBP13 - - HGNC:39292 13 - prohibitin pseudogene 13 pseudo PHBP13 prohibitin pseudogene 13 O - 20121230 -9606 100418848 LOC100418848 - - - 15 - calponin 2 pseudogene pseudo - - - - 20121230 -9606 100418861 LOC100418861 - - - 17 - keratin 37 pseudogene pseudo - - - - 20121230 -9606 100418862 LOC100418862 - - - 17 - sperm antigen with calponin homology and coiled-coil domains 1 pseudogene pseudo - - - - 20121230 -9606 100418865 LOC100418865 - - - 17 - keratin 18 pseudogene pseudo - - - - 20121230 -9606 100418868 LOC100418868 - - - 16 - calponin 2 pseudogene pseudo - - - - 20121230 -9606 100418871 LOC100418871 - - - X - cytohesin 1 pseudogene pseudo - - - - 20121230 -9606 100418874 LOC100418874 - - - 1 - cathepsin B pseudogene pseudo - - - - 20121230 -9606 100418877 KRT18P7 - - HGNC:20283 14 14q24.2 keratin 18 pseudogene 7 pseudo KRT18P7 keratin 18 pseudogene 7 O - 20121230 -9606 100418881 NBEAP2 - BCL8D HGNC:40003 2 - neurobeachin pseudogene 2 pseudo NBEAP2 neurobeachin pseudogene 2 O - 20121230 -9606 100418882 LOC100418882 - - - 12 - reticulon 3 pseudogene pseudo - - - - 20121230 -9606 100418883 LOC100418883 - - - 19 - actin, beta pseudogene pseudo - - - - 20121230 -9606 100418884 LOC100418884 - - - 11 - TSPY-like 1 pseudogene pseudo - - - - 20121230 -9606 100418885 LOC100418885 - - - 11 - amphiphysin pseudogene pseudo - - - - 20121230 -9606 100418887 TAGLN2P1 - - HGNC:21739 8 8q23.1 transgelin 2 pseudogene 1 pseudo TAGLN2P1 transgelin 2 pseudogene 1 O - 20121230 -9606 100418888 LOC100418888 - - - 17 - peptidase D pseudogene pseudo - - - - 20121230 -9606 100418889 STX18P1 - - HGNC:43995 17 - syntaxin 18 pseudogene 1 pseudo STX18P1 syntaxin 18 pseudogene 1 O - 20121230 -9606 100418892 GYG2P2 - - HGNC:39713 1 - glycogenin 2 pseudogene 2 pseudo GYG2P2 glycogenin 2 pseudogene 2 O - 20121230 -9606 100418897 NBEAP4 - - HGNC:40009 15 - neurobeachin pseudogene 4 pseudo NBEAP4 neurobeachin pseudogene 4 O - 20121230 -9606 100418898 LOC100418898 - - - 6 - transportin 3 pseudogene pseudo - - - - 20121230 -9606 100418902 LOC100418902 - - - 1 - tubulin, beta class I pseudogene pseudo - - - - 20121230 -9606 100418903 NBEAP5 - - HGNC:40010 14 - neurobeachin pseudogene 5 pseudo NBEAP5 neurobeachin pseudogene 5 O - 20121209 -9606 100418904 NBEAP6 - - HGNC:40011 14 - neurobeachin pseudogene 6 pseudo NBEAP6 neurobeachin pseudogene 6 O - 20121209 -9606 100418905 NBEAP3 - BCL8C HGNC:40004 22 - neurobeachin pseudogene 3 pseudo NBEAP3 neurobeachin pseudogene 3 O - 20121230 -9606 100418906 LOC100418906 - - - 2 - sideroflexin 4 pseudogene pseudo - - - - 20121230 -9606 100418908 LOC100418908 - - - 9 - glutaredoxin 3 pseudogene pseudo - - - - 20121230 -9606 100418910 LOC100418910 - - - 9 - actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 100418919 LOC100418919 - - - 10 - transportin 1 pseudogene pseudo - - - - 20121230 -9606 100418920 LOC100418920 - - - 3 - actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 100418921 ACTG1P12 - - HGNC:44496 3 - actin, gamma 1 pseudogene 12 pseudo ACTG1P12 actin, gamma 1 pseudogene 12 O - 20121230 -9606 100418923 LOC100418923 - - - 6 - TWIST neighbor pseudogene pseudo - - - - 20121230 -9606 100418924 LOC100418924 - - - 6 - actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 100418926 LOC100418926 - - - 8 - actin, gamma 1 pseudogene pseudo - - - - 20120726 -9606 100418928 LOC100418928 - - - 17 - RAD52 motif 1 pseudogene pseudo - - - - 20121230 -9606 100418937 LOC100418937 - - - 9 - tubulin, beta 8 class VIII pseudogene pseudo - - - - 20121230 -9606 100418938 LOC100418938 - - - 9 - forkhead box H1 pseudogene pseudo - - - - 20121230 -9606 100418939 LOC100418939 - - - 12 - tetraspanin 11 pseudogene pseudo - - - - 20121230 -9606 100418940 LOC100418940 - - - 12 - ATM interactor pseudogene pseudo - - - - 20121230 -9606 100418942 PRDX4P2 - - HGNC:43599 5 - peroxiredoxin 4 pseudogene 2 pseudo PRDX4P2 peroxiredoxin 4 pseudogene 2 O - 20121230 -9606 100418943 PRDX2P3 - - HGNC:44968 5 - peroxiredoxin 2 pseudogene 3 pseudo PRDX2P3 peroxiredoxin 2 pseudogene 3 O - 20121230 -9606 100418949 PRDX4P1 - - HGNC:43598 4 - peroxiredoxin 4 pseudogene 1 pseudo PRDX4P1 peroxiredoxin 4 pseudogene 1 O - 20121230 -9606 100418951 LOC100418951 - - - 15 - actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 100418955 PRDX3P4 - - HGNC:44643 3 3p14 peroxiredoxin 3 pseudogene 4 pseudo PRDX3P4 peroxiredoxin 3 pseudogene 4 O - 20121230 -9606 100418956 LOC100418956 - - - 6 - proline rich 11 pseudogene pseudo - - - - 20121230 -9606 100418957 LOC100418957 - - - 6 - forkhead box H1 pseudogene pseudo - - - - 20121230 -9606 100418959 LOC100418959 - - - 18 - aminoacylase 1 pseudogene pseudo - - - - 20121230 -9606 100418960 LOC100418960 - - - 16 - actin, gamma 1 pseudogene pseudo - - - - 20121230 -9606 100418961 LOC100418961 - - - 7 - aurora kinase A pseudogene pseudo - - - - 20121230 -9606 100418964 LOC100418964 - - - 1 - tubulin, beta 6 class V pseudogene pseudo - - - - 20121230 -9606 100418965 LOC100418965 - - - 1 - peroxiredoxin 5 pseudogene pseudo - - - - 20121230 -9606 100418968 SNX2P1 - - HGNC:41514 1 - sorting nexin 2 pseudogene 1 pseudo SNX2P1 sorting nexin 2 pseudogene 1 O - 20121230 -9606 100418972 SNX18P14 - - HGNC:39622 2 - sorting nexin 18 pseudogene 14 pseudo SNX18P14 sorting nexin 18 pseudogene 14 O - 20121230 -9606 100418973 LOC100418973 - - - 2 - citrate synthase pseudogene pseudo - - - - 20121230 -9606 100418974 LOC100418974 - - - 9 - tubulin, beta 2B class IIb pseudogene pseudo - - - - 20121230 -9606 100418975 SNX18P3 - - HGNC:39611 9 - sorting nexin 18 pseudogene 3 pseudo SNX18P3 sorting nexin 18 pseudogene 3 O - 20121230 -9606 100418976 SNX18P4 - - HGNC:39612 9 - sorting nexin 18 pseudogene 4 pseudo SNX18P4 sorting nexin 18 pseudogene 4 O - 20121209 -9606 100418977 SNX18P5 - - HGNC:39613 9 - sorting nexin 18 pseudogene 5 pseudo SNX18P5 sorting nexin 18 pseudogene 5 O - 20121230 -9606 100418978 SNX18P6 - - HGNC:39614 9 - sorting nexin 18 pseudogene 6 pseudo SNX18P6 sorting nexin 18 pseudogene 6 O - 20121209 -9606 100418980 SNX18P7 - - HGNC:39615 9 - sorting nexin 18 pseudogene 7 pseudo SNX18P7 sorting nexin 18 pseudogene 7 O - 20121230 -9606 100418981 SNX18P8 - - HGNC:39616 9 - sorting nexin 18 pseudogene 8 pseudo SNX18P8 sorting nexin 18 pseudogene 8 O - 20121230 -9606 100418983 LOC100418983 - - - 12 - neurofibromin 1 pseudogene pseudo - - - - 20121230 -9606 100418986 LOC100418986 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418987 LOC100418987 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418988 LOC100418988 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418989 LOC100418989 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418990 LOC100418990 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418991 LOC100418991 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418992 LOC100418992 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418993 LOC100418993 - - - 19 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418997 LOC100418997 - - - 11 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100418999 SNX18P1Y - - HGNC:38442 Y - sorting nexin 18 pseudogene 1, Y-linked pseudo SNX18P1Y sorting nexin 18 pseudogene 1, Y-linked O - 20121209 -9606 100419003 LOC100419003 - - - 4 - sorting nexin 18 pseudogene pseudo - - - - 20121230 -9606 100419004 SNX18P24 - - HGNC:39632 4 - sorting nexin 18 pseudogene 24 pseudo SNX18P24 sorting nexin 18 pseudogene 24 O - 20121230 -9606 100419005 SNX18P25 - - HGNC:39633 4 - sorting nexin 18 pseudogene 25 pseudo SNX18P25 sorting nexin 18 pseudogene 25 O - 20121230 -9606 100419006 NF1P1 - NF1HHS HGNC:7772 15 15q11.2 neurofibromin 1 pseudogene 1 pseudo NF1P1 neurofibromin 1 pseudogene 1 O - 20121209 -9606 100419007 TUBA8P1 - - HGNC:44568 3 - tubulin, alpha 8 pseudogene 1 pseudo TUBA8P1 tubulin, alpha 8 pseudogene 1 O - 20121230 -9606 100419008 LOC100419008 - - - 3 - proline rich 20B pseudogene pseudo - - - - 20121230 -9606 100419014 LOC100419014 - - - 17 - tubulin, beta 6 class V pseudogene pseudo - - - - 20121230 -9606 100419016 LOC100419016 - - - 16 - proline rich 21 pseudogene pseudo - - - - 20121230 -9606 100419017 LOC100419017 - - - 16 - cyclin Y-like 1 pseudogene pseudo - - - - 20121230 -9606 100419019 SNX18P15 - - HGNC:39623 1 - sorting nexin 18 pseudogene 15 pseudo SNX18P15 sorting nexin 18 pseudogene 15 O - 20121230 -9606 100419020 SNX18P16 - - HGNC:39624 1 - sorting nexin 18 pseudogene 16 pseudo SNX18P16 sorting nexin 18 pseudogene 16 O - 20121230 -9606 100419021 SNX18P18 - - HGNC:39626 1 - sorting nexin 18 pseudogene 18 pseudo SNX18P18 sorting nexin 18 pseudogene 18 O - 20121230 -9606 100419022 SNX18P19 - - HGNC:39627 1 - sorting nexin 18 pseudogene 19 pseudo SNX18P19 sorting nexin 18 pseudogene 19 O - 20121230 -9606 100419023 PDCL3P6 - - HGNC:44507 1 - phosducin-like 3 pseudogene 6 pseudo PDCL3P6 phosducin-like 3 pseudogene 6 O - 20121230 -9606 100419024 SNX18P17 - - HGNC:39625 1 - sorting nexin 18 pseudogene 17 pseudo SNX18P17 sorting nexin 18 pseudogene 17 O - 20121209 -9606 100419025 SNX18P21 - - HGNC:39629 1 - sorting nexin 18 pseudogene 21 pseudo SNX18P21 sorting nexin 18 pseudogene 21 O - 20121230 -9606 100419026 SNX18P20 - - HGNC:39628 1 - sorting nexin 18 pseudogene 20 pseudo SNX18P20 sorting nexin 18 pseudogene 20 O - 20121230 -9606 100419027 SNX18P22 - - HGNC:39630 1 - sorting nexin 18 pseudogene 22 pseudo SNX18P22 sorting nexin 18 pseudogene 22 O - 20121230 -9606 100419028 SNX25P1 - - HGNC:41509 1 - sorting nexin 25 pseudogene 1 pseudo SNX25P1 sorting nexin 25 pseudogene 1 O - 20121230 -9606 100419029 NF1P4 - NF1L4|NF1L6 HGNC:7769 14 14q11.1 neurofibromin 1 pseudogene 4 pseudo NF1P4 neurofibromin 1 pseudogene 4 O - 20121209 -9606 100419031 PRDX3P1 - - HGNC:39264 22 - peroxiredoxin 3 pseudogene 1 pseudo PRDX3P1 peroxiredoxin 3 pseudogene 1 O - 20121230 -9606 100419033 LOC100419033 - - - 12 - apolipoprotein F pseudogene pseudo - - - - 20121230 -9606 100419036 LOC100419036 - - - 5 - tubulin, alpha 3e pseudogene pseudo - - - - 20121230 -9606 100419037 LOC100419037 - - - 5 - spermine synthase pseudogene pseudo - - - - 20121230 -9606 100419038 SNX18P26 - - HGNC:39634 13 - sorting nexin 18 pseudogene 26 pseudo SNX18P26 sorting nexin 18 pseudogene 26 O - 20121230 -9606 100419040 SNX18P10 - - HGNC:39618 21 - sorting nexin 18 pseudogene 10 pseudo SNX18P10 sorting nexin 18 pseudogene 10 O - 20121230 -9606 100419041 SNX18P12 - - HGNC:39620 21 - sorting nexin 18 pseudogene 12 pseudo SNX18P12 sorting nexin 18 pseudogene 12 O - 20121230 -9606 100419042 SNX18P13 - - HGNC:39621 21 - sorting nexin 18 pseudogene 13 pseudo SNX18P13 sorting nexin 18 pseudogene 13 O - 20121230 -9606 100419043 SNX18P11 - - HGNC:39619 21 - sorting nexin 18 pseudogene 11 pseudo SNX18P11 sorting nexin 18 pseudogene 11 O - 20121230 -9606 100419045 LOC100419045 - - - 4 - tubulin, alpha 4a pseudogene pseudo - - - - 20121230 -9606 100419046 LOC100419046 - - - 4 - tubulin, alpha 4a pseudogene pseudo - - - - 20121230 -9606 100419047 SNX19P4 - - HGNC:41510 10 - sorting nexin 19 pseudogene 4 pseudo SNX19P4 sorting nexin 19 pseudogene 4 O - 20121230 -9606 100419052 LOC100419052 - - - 18 - sorting nexin 18 pseudogene pseudo - - - - 20121230 -9606 100419053 LOC100419053 - - - X - spermine synthase pseudogene pseudo - - - - 20121230 -9606 100419054 LOC100419054 - - - X - sarcoma antigen 1 pseudogene pseudo - - - - 20121230 -9606 100419056 LOC100419056 - - - 9 - chloride channel, voltage-sensitive 3 pseudogene pseudo - - - - 20121230 -9606 100419058 LOC100419058 - - - 11 - GPN-loop GTPase 1 pseudogene pseudo - - - - 20121230 -9606 100419059 LOC100419059 - - - 5 - tubulin, epsilon 1 pseudogene pseudo - - - - 20121230 -9606 100419062 FOSL1P1 - - HGNC:44055 4 - FOS-like antigen 1 pseudogene 1 pseudo FOSL1P1 FOS-like antigen 1 pseudogene 1 O - 20121230 -9606 100419066 LOC100419066 - - - 10 - nucleoporin 35kDa pseudogene pseudo - - - - 20121230 -9606 100419068 LOC100419068 - - - 10 - pancreatic lipase pseudogene pseudo - - - - 20121230 -9606 100419069 ENO1P3 - - HGNC:37944 3 - enolase 1, (alpha) pseudogene 3 pseudo ENO1P3 enolase 1, (alpha) pseudogene 3 O - 20121230 -9606 100419070 NUP210P3 - - HGNC:42712 3 - nucleoporin 210kDa pseudogene 3 pseudo NUP210P3 nucleoporin 210kDa pseudogene 3 O - 20121230 -9606 100419073 LOC100419073 - - - 6 - nucleoporin 155kDa pseudogene pseudo - - - - 20121230 -9606 100419074 AK3P2 - HsT26053 HGNC:31099 8 8q24.3 adenylate kinase 3 pseudogene 2 pseudo AK3P2 adenylate kinase 3 pseudogene 2 O - 20121230 -9606 100419075 AK3P3 - - HGNC:39062 7 - adenylate kinase 3 pseudogene 3 pseudo AK3P3 adenylate kinase 3 pseudogene 3 O - 20121230 -9606 100419077 LOC100419077 - - - 1 - Fc receptor-like 6 pseudogene pseudo - - - - 20121230 -9606 100419079 LOC100419079 - - - 14 - tubulin, alpha 1c pseudogene pseudo - - - - 20121230 -9606 100419081 LOC100419081 - - - 14 - double homeobox A pseudogene pseudo - - - - 20121230 -9606 100419085 LOC100419085 - - - 2 - spermidine synthase pseudogene pseudo - - - - 20121230 -9606 100419092 LOC100419092 - - - 11 - REST corepressor 1 pseudogene pseudo - - - - 20121230 -9606 100419095 TXNL1P1 - - HGNC:39459 13 - thioredoxin-like 1 pseudogene 1 pseudo TXNL1P1 thioredoxin-like 1 pseudogene 1 O - 20121230 -9606 100419096 LOC100419096 - - - 4 - WD repeat domain 12 pseudogene pseudo - - - - 20121230 -9606 100419098 ENO1P2 - - HGNC:37943 15 - enolase 1, (alpha) pseudogene 2 pseudo ENO1P2 enolase 1, (alpha) pseudogene 2 O - 20121230 -9606 100419102 LOC100419102 - - - 17 - calponin 3, acidic pseudogene pseudo - - - - 20121230 -9606 100419108 LOC100419108 - - - 2 - centromere protein L pseudogene pseudo - - - - 20121230 -9606 100419110 LOC100419110 - - - 2 - ribosomal protein L4 pseudogene pseudo - - - - 20121230 -9606 100419140 LOC100419140 - - - 5 - ribosomal protein L5 pseudogene pseudo - - - - 20121230 -9606 100419149 HCFC2P1 - - HGNC:39815 13 - host cell factor C2 pseudogene 1 pseudo HCFC2P1 host cell factor C2 pseudogene 1 O - 20121230 -9606 100419154 LOC100419154 - - - 4 - ribosomal protein L4 pseudogene pseudo - - - - 20121230 -9606 100419158 SETP12 - - HGNC:42931 4 - SET pseudogene 12 pseudo SETP12 SET pseudogene 12 O - 20121230 -9606 100419161 LOC100419161 - - - 4 - nei endonuclease VIII-like 2 (E. coli) pseudogene pseudo - - - - 20121230 -9606 100419170 LOC100419170 - - - 4 - toll-like receptor 2 pseudogene pseudo - - - - 20121230 -9606 100419174 LOC100419174 - - - 15 - WD repeat domain 12 pseudogene pseudo - - - - 20121230 -9606 100419178 SETP6 - - HGNC:42925 3 - SET pseudogene 6 pseudo SETP6 SET pseudogene 6 O - 20121230 -9606 100419185 LOC100419185 - - - 3 - PDZ and LIM domain 1 pseudogene pseudo - - - - 20121230 -9606 100419187 SETP11 - - HGNC:42930 3 - SET pseudogene 11 pseudo SETP11 SET pseudogene 11 O - 20121230 -9606 100419209 PRSS52P - - HGNC:37322 8 - protease, serine, 52, pseudogene pseudo PRSS52P protease, serine, 52, pseudogene O - 20121230 -9606 100419232 LOC100419232 - - - X - UBX domain protein 4 pseudogene pseudo - - - - 20121230 -9606 100419238 LOC100419238 - - - X - centromere protein V pseudogene pseudo - - - - 20121230 -9606 100419246 LOC100419246 - - - X - BTG family, member 3 pseudogene pseudo - - - - 20121230 -9606 100419257 LOC100419257 - - - 1 - ribosomal protein S2 pseudogene pseudo - - - - 20121230 -9606 100419284 LOC100419284 - - - 9 - RAN binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100419293 LOC100419293 - - - 12 - carbonyl reductase 1 pseudogene pseudo - - - - 20121230 -9606 100419301 LOC100419301 - - - 19 - ribosomal protein S8 pseudogene pseudo - - - - 20121230 -9606 100419307 LOC100419307 - - - 19 - ribosomal protein L5 pseudogene pseudo - - - - 20121230 -9606 100419318 LOC100419318 - - - 5 - FAST kinase domains 3 pseudogene pseudo - - - - 20121230 -9606 100419319 LOC100419319 - - - 5 - UBX domain protein 2A pseudogene pseudo - - - - 20121230 -9606 100419321 LOC100419321 - - - 5 - ribosomal protein S3A pseudogene pseudo - - - - 20121230 -9606 100419324 LOC100419324 - - - 5 - B-cell CLL/lymphoma 9 pseudogene pseudo - - - - 20121230 -9606 100419337 CENPIP1 - - HGNC:39575 13 - centromere protein I pseudogene 1 pseudo CENPIP1 centromere protein I pseudogene 1 O - 20121230 -9606 100419353 LOC100419353 - - - 4 - histone cluster 3, H3 pseudogene pseudo - - - - 20121230 -9606 100419356 LOC100419356 - - - 4 - ethanolamine kinase 1 pseudogene pseudo - - - - 20121230 -9606 100419366 LOC100419366 - - - 15 - phosphodiesterase 8B pseudogene pseudo - - - - 20121230 -9606 100419391 RPL21P135 - - HGNC:44539 3 - ribosomal protein L21 pseudogene 135 pseudo RPL21P135 ribosomal protein L21 pseudogene 135 O - 20121230 -9606 100419392 RPL12P44 - - HGNC:44603 3 - ribosomal protein L12 pseudogene 44 pseudo RPL12P44 ribosomal protein L12 pseudogene 44 O - 20121230 -9606 100419416 SRPK2P - SRPK2ps HGNC:30303 8 8q12.3 SRSF protein kinase 2 pseudogene pseudo SRPK2P SRSF protein kinase 2 pseudogene O - 20121230 -9606 100419423 ASNSP4 - - HGNC:39400 8 - asparagine synthetase pseudogene 4 pseudo ASNSP4 asparagine synthetase pseudogene 4 O - 20121230 -9606 100419426 LOC100419426 - - - 17 - PDZ and LIM domain 1 pseudogene pseudo - - - - 20121230 -9606 100419427 LOC100419427 - - - 17 - PDZ and LIM domain 1 pseudogene pseudo - - - - 20121230 -9606 100419436 LOC100419436 - - - 17 - ribosomal protein S2 pseudogene pseudo - - - - 20121230 -9606 100419447 LOC100419447 - - - 7 - CSRP2 binding protein pseudogene pseudo - - - - 20121230 -9606 100419451 LOC100419451 - - - 7 - zinc finger protein 3 pseudogene pseudo - - - - 20121230 -9606 100419458 LOC100419458 - - - 7 - ribosomal protein L21 pseudogene pseudo - - - - 20121230 -9606 100419471 LOC100419471 - - - 1 - ribosomal protein S23 pseudogene pseudo - - - - 20121230 -9606 100419472 LOC100419472 - - - 1 - ribosomal protein S23 pseudogene pseudo - - - - 20121230 -9606 100419477 LOC100419477 - - - 1 - ribosomal protein L12 pseudogene pseudo - - - - 20121230 -9606 100419489 LOC100419489 - - - 1 - histone deacetylase 1 pseudogene pseudo - - - - 20121230 -9606 100419503 LOC100419503 - - - 14 - ribosomal protein S2 pseudogene pseudo - - - - 20121230 -9606 100419506 LOC100419506 - - - 22 - ribosomal protein L4 pseudogene pseudo - - - - 20121230 -9606 100419511 LOC100419511 - - - 2 - zinc finger protein 79 pseudogene pseudo - - - - 20121230 -9606 100419512 LOC100419512 - - - 2 - zinc finger protein 19 pseudogene pseudo - - - - 20121230 -9606 100419513 LOC100419513 - - - 2 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419515 LOC100419515 - - - 9 - zinc finger protein 41 pseudogene pseudo - - - - 20121230 -9606 100419516 LOC100419516 - - - 9 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419520 LOC100419520 - - - 12 - RAN binding protein 6 pseudogene pseudo - - - - 20121230 -9606 100419521 LOC100419521 - - - 12 - ribosomal protein L21 pseudogene pseudo - - - - 20121230 -9606 100419525 LOC100419525 - - - 12 - ribosomal protein S3A pseudogene pseudo - - - - 20121230 -9606 100419542 LOC100419542 - - - 11 - ribosomal protein L37 pseudogene pseudo - - - - 20121230 -9606 100419545 LOC100419545 - - - 5 - zinc finger protein 35 pseudogene pseudo - - - - 20121230 -9606 100419548 LOC100419548 - - - 5 - ribosomal protein S27a pseudogene pseudo - - - - 20121230 -9606 100419549 LOC100419549 - - - 5 - PRAME family member 17 pseudogene pseudo - - - - 20121230 -9606 100419552 LOC100419552 - - - 5 - zinc finger protein 57 pseudogene pseudo - - - - 20121230 -9606 100419553 LOC100419553 - - - 5 - zinc finger protein 35 pseudogene pseudo - - - - 20121230 -9606 100419554 ZNF92P1Y - - HGNC:39553 Y - zinc finger protein 92 pseudogene 1, Y-linked pseudo ZNF92P1Y zinc finger protein 92 pseudogene 1, Y-linked O - 20121230 -9606 100419558 KARSP1 - - HGNC:39207 13 - lysyl-tRNA synthetase pseudogene 1 pseudo KARSP1 lysyl-tRNA synthetase pseudogene 1 O - 20121230 -9606 100419560 KARSP2 - - HGNC:39208 13 - lysyl-tRNA synthetase pseudogene 2 pseudo KARSP2 lysyl-tRNA synthetase pseudogene 2 O - 20121230 -9606 100419562 LOC100419562 - - - 20 - ribosomal protein L13 pseudogene pseudo - - - - 20121230 -9606 100419565 LOC100419565 - - - 20 - ribosomal protein S3A pseudogene pseudo - - - - 20121230 -9606 100419570 LOC100419570 - - - 20 - ribosomal protein L29 pseudogene pseudo - - - - 20121230 -9606 100419572 LOC100419572 - - - 4 - uracil-DNA glycosylase pseudogene pseudo - - - - 20121230 -9606 100419574 LOC100419574 - - - 15 - HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene pseudo - - - - 20121230 -9606 100419579 LOC100419579 - - - 15 - HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene pseudo - - - - 20121209 -9606 100419583 LOC100419583 - - - 15 - ring finger protein 4 pseudogene pseudo - - - - 20121230 -9606 100419595 LOC100419595 - - - 10 - histone deacetylase 1 pseudogene pseudo - - - - 20121230 -9606 100419599 RNF10P1 - - HGNC:44472 3 - ring finger protein 10 pseudogene 1 pseudo RNF10P1 ring finger protein 10 pseudogene 1 O - 20121230 -9606 100419606 ZNF90P2 - ZNF463P|dJ111M5.3 HGNC:21687 6 - zinc finger protein 90 pseudogene 2 pseudo ZNF90P2 zinc finger protein 90 pseudogene 2 O - 20121230 -9606 100419608 ZNF602P - dJ265C24.5 HGNC:23313 6 6p21 zinc finger protein 602, pseudogene pseudo ZNF602P zinc finger protein 602, pseudogene O - 20121230 -9606 100419609 ZNF70P1 - ZNF314P|bCX269C15.3|dJ1033B10.7 HGNC:13846 6 6p21.32 zinc finger protein 70 pseudogene 1 pseudo ZNF70P1 zinc finger protein 70 pseudogene 1 O - 20121230 -9606 100419610 LOC100419610 - - - 6 - thymidylate synthetase pseudogene pseudo - - - - 20121230 -9606 100419613 LOC100419613 - - - 8 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419614 LOC100419614 - - - 8 - myo-inositol oxygenase pseudogene pseudo - - - - 20121230 -9606 100419615 LOC100419615 - - - 8 - complement component 7 pseudogene pseudo - - - - 20121230 -9606 100419616 LOC100419616 - - - 8 - Impact homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100419617 LOC100419617 - - - 8 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419620 LOC100419620 - - - 17 - RAN binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100419621 LOC100419621 - - - 17 - ribosomal protein L24 pseudogene pseudo - - - - 20121230 -9606 100419622 LOC100419622 - - - 17 - ribosomal protein L37 pseudogene pseudo - - - - 20121230 -9606 100419624 LOC100419624 - - - 17 - RAN binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100419639 LOC100419639 - - - 16 - ribosomal protein L21 pseudogene pseudo - - - - 20121230 -9606 100419641 LOC100419641 - - - 7 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419642 LOC100419642 - - - 7 - zinc finger protein 85 pseudogene pseudo - - - - 20121230 -9606 100419643 LOC100419643 - - - 7 - ring finger protein 14 pseudogene pseudo - - - - 20121230 -9606 100419644 LOC100419644 - - - 7 - sorbitol dehydrogenase pseudogene pseudo - - - - 20121230 -9606 100419645 LOC100419645 - - - 7 - ring finger protein 14 pseudogene pseudo - - - - 20121230 -9606 100419649 LOC100419649 - - - 1 - PRAME family member 10 pseudogene pseudo - - - - 20121230 -9606 100419650 LOC100419650 - - - 1 - ribosomal protein L23a pseudogene pseudo - - - - 20121230 -9606 100419654 LOC100419654 - - - 1 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419668 LOC100419668 - - - 14 - protein kinase C, eta pseudogene pseudo - - - - 20121230 -9606 100419673 LOC100419673 - - - 22 - PHD finger protein 10 pseudogene pseudo - - - - 20121230 -9606 100419678 LOC100419678 - - - 2 - zinc finger, MYM-type 1 pseudogene pseudo - - - - 20121230 -9606 100419679 LOC100419679 - - - 2 - zinc finger protein 670 pseudogene pseudo - - - - 20121230 -9606 100419680 LOC100419680 - - - 2 - zinc finger protein 430 pseudogene pseudo - - - - 20121230 -9606 100419682 ZNF863P - - HGNC:35156 2 - zinc finger protein 863, pseudogene pseudo ZNF863P zinc finger protein 863, pseudogene O - 20121230 -9606 100419684 LOC100419684 - - - 2 - zinc finger protein 114 pseudogene pseudo - - - - 20121230 -9606 100419685 LOC100419685 - - - 2 - zinc finger protein 555 pseudogene pseudo - - - - 20121230 -9606 100419686 LOC100419686 - - - 2 - zinc finger protein 256 pseudogene pseudo - - - - 20121230 -9606 100419687 LOC100419687 - - - 9 - ring finger protein 152 pseudogene pseudo - - - - 20121230 -9606 100419690 LOC100419690 - - - 9 - zinc finger protein 114 pseudogene pseudo - - - - 20121230 -9606 100419691 LOC100419691 - - - 9 - zinc finger protein 114 pseudogene pseudo - - - - 20121230 -9606 100419692 LOC100419692 - - - 9 - zinc finger protein 791 pseudogene pseudo - - - - 20121230 -9606 100419693 LOC100419693 - - - 9 - zinc finger protein 114 pseudogene pseudo - - - - 20121209 -9606 100419694 LOC100419694 - - - 9 - zinc finger protein 114 pseudogene pseudo - - - - 20121209 -9606 100419700 LOC100419700 - - - 12 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419701 LOC100419701 - - - 12 - CTAGE family, member 9 pseudogene pseudo - - - - 20121230 -9606 100419702 LOC100419702 - - - 12 - necdin homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100419704 LOC100419704 - - - 19 - zinc finger protein 57 pseudogene pseudo - - - - 20121230 -9606 100419705 ZNF92P2 - - HGNC:39554 19 - zinc finger protein 92 pseudogene 2 pseudo ZNF92P2 zinc finger protein 92 pseudogene 2 O - 20121230 -9606 100419706 LOC100419706 - - - 19 - zinc finger protein 84 pseudogene pseudo - - - - 20121230 -9606 100419707 LOC100419707 - - - 19 - zinc finger protein 41 pseudogene pseudo - - - - 20121230 -9606 100419709 ZNF887P - ZNF887 HGNC:38700 19 - zinc finger protein 887, pseudogene pseudo ZNF887P zinc finger protein 887, pseudogene O - 20121230 -9606 100419711 ZNF92P3 - - HGNC:39555 19 - zinc finger protein 92 pseudogene 3 pseudo ZNF92P3 zinc finger protein 92 pseudogene 3 O - 20121230 -9606 100419712 LOC100419712 - - - 11 - zinc finger protein 12 pseudogene pseudo - - - - 20121230 -9606 100419713 LOC100419713 - - - 11 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419714 LOC100419714 - - - 11 11q14 adenosylhomocysteinase pseudogene pseudo - - - - 20121230 -9606 100419715 LOC100419715 - - - 5 - zinc finger protein 626 pseudogene pseudo - - - - 20121230 -9606 100419716 LOC100419716 - - - 5 - zinc finger protein 709 pseudogene pseudo - - - - 20121230 -9606 100419717 SALL4P1 - - HGNC:39818 5 - sal-like 4 (Drosophila) pseudogene 1 pseudo SALL4P1 sal-like 4 (Drosophila) pseudogene 1 O - 20121230 -9606 100419720 LOC100419720 - - - 5 - RUN domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100419721 LOC100419721 - - - 5 - zinc finger protein 670 pseudogene pseudo - - - - 20121230 -9606 100419722 RNF19BPY - - HGNC:38398 Y - ring finger protein 19B pseudogene, Y-linked pseudo RNF19BPY ring finger protein 19B pseudogene, Y-linked O - 20121230 -9606 100419724 ZNF736P8Y - - HGNC:38406 Y - zinc finger protein 736 pseudogene 8, Y-linked pseudo ZNF736P8Y zinc finger protein 736 pseudogene 8, Y-linked O - 20121230 -9606 100419725 ZNF736P7Y - - HGNC:38404 Y - zinc finger protein 736 pseudogene 7, Y-linked pseudo ZNF736P7Y zinc finger protein 736 pseudogene 7, Y-linked O - 20121230 -9606 100419726 ZNF736P9Y - - HGNC:38408 Y - zinc finger protein 736 pseudogene 9, Y-linked pseudo ZNF736P9Y zinc finger protein 736 pseudogene 9, Y-linked O - 20121230 -9606 100419727 ZNF736P10Y - - HGNC:38410 Y - zinc finger protein 736 pseudogene 10, Y-linked pseudo ZNF736P10Y zinc finger protein 736 pseudogene 10, Y-linked O - 20121230 -9606 100419728 ZNF886P - - HGNC:38420 Y - zinc finger protein 886, pseudogene pseudo ZNF886P zinc finger protein 886, pseudogene O - 20121230 -9606 100419729 ZNF884P - - HGNC:38421 Y - zinc finger protein 884, pseudogene pseudo ZNF884P zinc finger protein 884, pseudogene O - 20121230 -9606 100419730 ZNF736P11Y - - HGNC:38426 Y - zinc finger protein 736 pseudogene 11, Y-linked pseudo ZNF736P11Y zinc finger protein 736 pseudogene 11, Y-linked O - 20121230 -9606 100419731 ZNF736P12Y - - HGNC:38431 Y - zinc finger protein 736 pseudogene 12, Y-linked pseudo ZNF736P12Y zinc finger protein 736 pseudogene 12, Y-linked O - 20121209 -9606 100419732 ZNF736P6Y - - HGNC:38440 Y - zinc finger protein 736 pseudogene 6, Y-linked pseudo ZNF736P6Y zinc finger protein 736 pseudogene 6, Y-linked O - 20121209 -9606 100419733 ZNF839P1 - - HGNC:38455 Y - zinc finger protein 839 pseudogene 1 pseudo ZNF839P1 zinc finger protein 839 pseudogene 1 O - 20121230 -9606 100419734 ZNF885P - - HGNC:38456 Y - zinc finger protein 885, pseudogene pseudo ZNF885P zinc finger protein 885, pseudogene O - 20121230 -9606 100419735 ZNF736P4Y - - HGNC:38464 Y - zinc finger protein 736 pseudogene 4, Y-linked pseudo ZNF736P4Y zinc finger protein 736 pseudogene 4, Y-linked O - 20121209 -9606 100419737 LOC100419737 - - - 21 - CTAGE family, member 5 pseudogene pseudo - - - - 20121230 -9606 100419739 LOC100419739 - - - 4 - zinc finger protein 341 pseudogene pseudo - - - - 20121230 -9606 100419741 LOC100419741 - - - 4 - zinc finger protein 772 pseudogene pseudo - - - - 20121230 -9606 100419742 R3HDM2P1 - - HGNC:44056 4 - R3H domain containing 2 pseudogene 1 pseudo R3HDM2P1 R3H domain containing 2 pseudogene 1 O - 20121230 -9606 100419743 LOC100419743 - - - 4 - double homeobox 4 like 4 pseudogene pseudo - - - - 20121230 -9606 100419748 LOC100419748 - - - 3 - zinc finger protein 852 pseudogene pseudo - - - - 20121230 -9606 100419750 LOC100419750 - - - 3 - DTW domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100419751 ZNF587P1 - - HGNC:42438 3 - zinc finger protein 587 pseudogene 1 pseudo ZNF587P1 zinc finger protein 587 pseudogene 1 O - 20121230 -9606 100419752 LOC100419752 - - - 3 - zinc finger protein 251 pseudogene pseudo - - - - 20121230 -9606 100419755 LOC100419755 - - - 3 - zinc finger protein 426 pseudogene pseudo - - - - 20121230 -9606 100419756 ZNF968P - - HGNC:44091 6 - zinc finger protein 968, pseudogene pseudo ZNF968P zinc finger protein 968, pseudogene O - 20121230 -9606 100419758 PKMP3 - - HGNC:44245 6 - pyruvate kinase, muscle pseudogene 3 pseudo PKMP3 pyruvate kinase, muscle pseudogene 3 O - 20121230 -9606 100419761 LOC100419761 - - - 8 - zinc finger protein 654 pseudogene pseudo - - - - 20121230 -9606 100419762 LOC100419762 - - - 8 - zinc finger protein 773 pseudogene pseudo - - - - 20121230 -9606 100419763 LOC100419763 - - - 8 - zinc finger protein 192 pseudogene pseudo - - - - 20121230 -9606 100419764 LOC100419764 - - - 17 - glycyl-tRNA synthetase pseudogene pseudo - - - - 20121230 -9606 100419768 LOC100419768 - - - 17 - ribosomal protein S15a pseudogene pseudo - - - - 20121230 -9606 100419772 LOC100419772 - - - 7 - CGRP receptor component pseudogene pseudo - - - - 20121230 -9606 100419773 LOC100419773 - - - 7 - zinc finger protein 33B pseudogene pseudo - - - - 20121230 -9606 100419774 LOC100419774 - - - 7 - zinc finger protein 383 pseudogene pseudo - - - - 20121230 -9606 100419775 LOC100419775 - - - 7 - zinc finger protein 519 pseudogene pseudo - - - - 20121230 -9606 100419776 LOC100419776 - - - 7 - zinc finger protein 619 pseudogene pseudo - - - - 20121230 -9606 100419777 LOC100419777 - - - 7 - ring finger protein 138, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 100419779 LOC100419779 - - - 7 - zinc finger protein 195 pseudogene pseudo - - - - 20121230 -9606 100419780 LOC100419780 - - - 7 - zinc finger protein 479 pseudogene pseudo - - - - 20121230 -9606 100419781 LOC100419781 - - - 7 - zinc finger protein 267 pseudogene pseudo - - - - 20121230 -9606 100419782 LOC100419782 - - - 7 - zinc finger protein 717 pseudogene pseudo - - - - 20121230 -9606 100419783 LOC100419783 - - - X - zinc finger protein 831 pseudogene pseudo - - - - 20121230 -9606 100419784 LOC100419784 - - - X - zinc finger protein 484 pseudogene pseudo - - - - 20121230 -9606 100419786 LOC100419786 - - - X - zinc finger protein 670 pseudogene pseudo - - - - 20121230 -9606 100419788 RNF19BPX - RNF19BX HGNC:38484 X - ring finger protein 19B pseudogene, X-linked pseudo RNF19BPX ring finger protein 19B pseudogene, X-linked O - 20121230 -9606 100419790 LOC100419790 - - - X - zinc finger protein 670 pseudogene pseudo - - - - 20121230 -9606 100419791 LOC100419791 - - - X - zinc finger protein 449 pseudogene pseudo - - - - 20121230 -9606 100419792 LOC100419792 - - - X - zinc finger protein 622 pseudogene pseudo - - - - 20121230 -9606 100419793 LOC100419793 - - - X - BEN domain containing 7 pseudogene pseudo - - - - 20121230 -9606 100419794 LOC100419794 - - - X - zinc finger protein 449 pseudogene pseudo - - - - 20121230 -9606 100419795 LOC100419795 - - - X - zinc finger, MYM-type 1 pseudogene pseudo - - - - 20121230 -9606 100419796 LOC100419796 - - - 1 - zinc finger protein 146 pseudogene pseudo - - - - 20121230 -9606 100419798 LOC100419798 - - - 1 - gon-4-like (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100419799 LOC100419799 - - - 1 - gon-4-like (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100419801 LOC100419801 - - - 1 - zinc finger protein 532 pseudogene pseudo - - - - 20121230 -9606 100419802 LOC100419802 - - - 1 - zinc finger protein 184 pseudogene pseudo - - - - 20121230 -9606 100419803 LOC100419803 - - - 1 - zinc finger protein 510 pseudogene pseudo - - - - 20121230 -9606 100419806 LOC100419806 - - - 1 - zinc finger protein 519 pseudogene pseudo - - - - 20121230 -9606 100419811 LOC100419811 - - - 22 - interleukin 9 receptor pseudogene pseudo - - - - 20121230 -9606 100419812 LOC100419812 - - - 2 - COBW domain containing 7 pseudogene pseudo - - - - 20121230 -9606 100419814 LOC100419814 - - - 2 - ankyrin repeat domain 49 pseudogene pseudo - - - - 20121230 -9606 100419815 LOC100419815 - - - 2 - ankyrin repeat domain 57 pseudogene pseudo - - - - 20121230 -9606 100419816 LOC100419816 - - - 2 - orthodenticle homeobox 2 pseudogene pseudo - - - - 20121230 -9606 100419821 LOC100419821 - - - 9 - casein kinase 1, gamma 2 pseudogene pseudo - - - - 20121230 -9606 100419824 LOC100419824 - - - 9 - kinesin family member 27 pseudogene pseudo - - - - 20121230 -9606 100419825 LOC100419825 - - - 12 - zinc finger protein 655 pseudogene pseudo - - - - 20121230 -9606 100419827 LOC100419827 - - - 12 - zinc finger protein 167 pseudogene pseudo - - - - 20121230 -9606 100419829 LOC100419829 - - - 12 - arginyl-tRNA synthetase pseudogene pseudo - - - - 20121230 -9606 100419830 LOC100419830 - - - 12 - zinc finger protein 337 pseudogene pseudo - - - - 20121230 -9606 100419831 LOC100419831 - - - 19 - zinc finger protein 420 pseudogene pseudo - - - - 20121230 -9606 100419833 LOC100419833 - - - 19 - zinc finger protein 709 pseudogene pseudo - - - - 20121230 -9606 100419834 LOC100419834 - - - 19 - zinc finger protein 134 pseudogene pseudo - - - - 20121230 -9606 100419835 LOC100419835 - - - 19 - zinc finger protein 160 pseudogene pseudo - - - - 20121230 -9606 100419836 LOC100419836 - - - 19 - zinc finger protein 347 pseudogene pseudo - - - - 20121230 -9606 100419838 LOC100419838 - - - 19 - zinc finger protein 860 pseudogene pseudo - - - - 20121230 -9606 100419839 LOC100419839 - - - 19 - zinc finger protein 300 pseudogene pseudo - - - - 20121230 -9606 100419840 LOC100419840 - - - 19 - zinc finger protein 446 pseudogene pseudo - - - - 20121230 -9606 100419841 LOC100419841 - - - 19 - zinc finger protein 107 pseudogene pseudo - - - - 20121230 -9606 100419842 LOC100419842 - - - 19 - zinc finger protein 396 pseudogene pseudo - - - - 20121230 -9606 100419844 LOC100419844 - - - 19 - zinc finger protein 610 pseudogene pseudo - - - - 20121230 -9606 100419845 LOC100419845 - - - 19 - zinc finger protein 415 pseudogene pseudo - - - - 20121230 -9606 100419847 LOC100419847 - - - 19 - zinc finger protein 436 pseudogene pseudo - - - - 20121230 -9606 100419848 LOC100419848 - - - 19 - zinc finger protein 250 pseudogene pseudo - - - - 20121230 -9606 100419851 LOC100419851 - - - 5 - protein serine kinase H1 pseudogene pseudo - - - - 20121230 -9606 100419852 LOC100419852 - - - 5 - sterol carrier protein 2 pseudogene pseudo - - - - 20121230 -9606 100419853 LOC100419853 - - - 5 - transmembrane protein 69 pseudogene pseudo - - - - 20121230 -9606 100419854 ZNF646P1 - - HGNC:39749 13 - zinc finger protein 646 pseudogene 1 pseudo ZNF646P1 zinc finger protein 646 pseudogene 1 O - 20121230 -9606 100419855 SALL4P4 - - HGNC:39821 13 - sal-like 4 (Drosophila) pseudogene 4 pseudo SALL4P4 sal-like 4 (Drosophila) pseudogene 4 O - 20121230 -9606 100419859 LOC100419859 - - - 20 - zinc finger, MYM-type 1 pseudogene pseudo - - - - 20121230 -9606 100419861 LOC100419861 - - - 4 - metallophosphoesterase 1 pseudogene pseudo - - - - 20121230 -9606 100419862 LOC100419862 - - - 4 - HEAT repeat containing 2 pseudogene pseudo - - - - 20121230 -9606 100419863 LOC100419863 - - - 4 - zinc finger protein 705A pseudogene pseudo - - - - 20121230 -9606 100419866 ZNF444P1 - ZNF864P HGNC:35157 15 - zinc finger protein 444 pseudogene 1 pseudo ZNF444P1 zinc finger protein 444 pseudogene 1 O - 20121230 -9606 100419867 ZNF101P1 - - HGNC:44940 10 - zinc finger protein 101 pseudogene 1 pseudo ZNF101P1 zinc finger protein 101 pseudogene 1 O - 20121230 -9606 100419868 ZNF33BP1 - - HGNC:44975 10 - zinc finger protein 33B pseudogene 1 pseudo ZNF33BP1 zinc finger protein 33B pseudogene 1 O - 20121230 -9606 100419870 LOC100419870 - - - 10 - zinc finger protein 717 pseudogene pseudo - - - - 20121230 -9606 100419872 LOC100419872 - - - 10 - zinc finger, MYM-type 4 pseudogene pseudo - - - - 20121230 -9606 100419873 LOC100419873 - - - 10 - zinc finger protein 519 pseudogene pseudo - - - - 20121230 -9606 100419875 FNBP1P2 - - HGNC:44527 3 - formin binding protein 1 pseudogene 2 pseudo FNBP1P2 formin binding protein 1 pseudogene 2 O - 20121230 -9606 100419877 LOC100419877 - - - 3 - bromodomain containing 7 pseudogene pseudo - - - - 20121230 -9606 100419878 LOC100419878 - - - 3 - methyltransferase like 5 pseudogene pseudo - - - - 20121230 -9606 100419880 LOC100419880 - - - 3 - kinesin family member 3A pseudogene pseudo - - - - 20121230 -9606 100419882 LOC100419882 - - - 6 - transmembrane protein 98 pseudogene pseudo - - - - 20121230 -9606 100419883 YAP1P3 - - HGNC:43890 6 - Yes-associated protein 1 pseudogene 3 pseudo YAP1P3 Yes-associated protein 1 pseudogene 3 O - 20121230 -9606 100419888 LOC100419888 - - - 17 - zinc finger protein 331 pseudogene pseudo - - - - 20121230 -9606 100419890 LOC100419890 - - - 17 - zinc finger, MYM-type 4 pseudogene pseudo - - - - 20121230 -9606 100419891 LOC100419891 - - - 18 - zinc finger protein 114 pseudogene pseudo - - - - 20121230 -9606 100419892 LOC100419892 - - - 18 - zinc finger protein 592 pseudogene pseudo - - - - 20121230 -9606 100419893 LOC100419893 - - - 18 - zinc finger protein 415 pseudogene pseudo - - - - 20121230 -9606 100419894 LOC100419894 - - - 18 - zinc finger protein 347 pseudogene pseudo - - - - 20121230 -9606 100419895 LOC100419895 - - - 16 - zinc finger protein 670 pseudogene pseudo - - - - 20121230 -9606 100419896 LOC100419896 - - - 16 - zinc finger protein 267 pseudogene pseudo - - - - 20121230 -9606 100419901 LOC100419901 - - - 7 - casein kinase 1, alpha 1 pseudogene pseudo - - - - 20121230 -9606 100419903 RWDD4P1 - FAM28BP HGNC:23753 7 - RWD domain containing 4 pseudogene 1 pseudo RWDD4P1 RWD domain containing 4 pseudogene 1 O - 20121230 -9606 100419906 LOC100419906 - - - X - ankyrin repeat domain 11 pseudogene pseudo - - - - 20121230 -9606 100419907 LOC100419907 - - - X - kinesin family member 23 pseudogene pseudo - - - - 20121230 -9606 100419908 LOC100419908 - - - X - zinc finger protein 585A pseudogene pseudo - - - - 20121230 -9606 100419909 YAP1P2 - - HGNC:38017 X - Yes-associated protein 1 pseudogene 2 pseudo YAP1P2 Yes-associated protein 1 pseudogene 2 O - 20121230 -9606 100419911 LOC100419911 - - - 1 - prenylcysteine oxidase 1 pseudogene pseudo - - - - 20121230 -9606 100419912 LOC100419912 - - - 14 - sal-like 4 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100419913 LOC100419913 - - - 14 - zinc finger protein 124 pseudogene pseudo - - - - 20121230 -9606 100419915 LOC100419915 - - - 22 - OTU domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100419916 LOC100419916 - - - 2 - cyclin-dependent kinase 8 pseudogene pseudo - - - - 20121230 -9606 100419917 LOC100419917 - - - 2 - lysine-rich coiled-coil 1 pseudogene pseudo - - - - 20121230 -9606 100419920 LOC100419920 - - - 2 - ankyrin repeat domain 33B pseudogene pseudo - - - - 20121230 -9606 100419921 LOC100419921 - - - 2 - uncharacterized LOC100419921 pseudo - - - - 20121230 -9606 100419923 LOC100419923 - - - 9 - density-regulated protein pseudogene pseudo - - - - 20121230 -9606 100419924 LOC100419924 - - - 9 - uncharacterized LOC100419924 pseudo - - - - 20121209 -9606 100419925 LOC100419925 - - - 9 - uncharacterized LOC100419925 pseudo - - - - 20121230 -9606 100419926 LOC100419926 - - - 9 - uncharacterized LOC100419926 pseudo - - - - 20121230 -9606 100419928 LOC100419928 - - - 12 - M-phase phosphoprotein 8 pseudogene pseudo - - - - 20121230 -9606 100419929 LOC100419929 - - - 12 - acidic repeat containing pseudogene pseudo - - - - 20121230 -9606 100419930 LOC100419930 - - - 12 - MLF1 interacting protein pseudogene pseudo - - - - 20121230 -9606 100419932 LOC100419932 - - - 12 - FGFR1 oncogene partner 2 pseudogene pseudo - - - - 20121230 -9606 100419935 LOC100419935 - - - 12 - tumor protein D52-like 2 pseudogene pseudo - - - - 20121230 -9606 100419945 TRIM51DP - - HGNC:43969 11 - tripartite motif-containing 51D, pseudogene pseudo TRIM51DP tripartite motif-containing 51D, pseudogene O - 20121230 -9606 100419947 HMGB1P21 - - HGNC:39106 5 - high mobility group box 1 pseudogene 21 pseudo HMGB1P21 high mobility group box 1 pseudogene 21 O - 20121230 -9606 100419948 HMGB3P17 - - HGNC:39309 5 - high mobility group box 3 pseudogene 17 pseudo HMGB3P17 high mobility group box 3 pseudogene 17 O - 20121230 -9606 100419949 HMGB3P3 - - HGNC:39102 5 - high mobility group box 3 pseudogene 3 pseudo HMGB3P3 high mobility group box 3 pseudogene 3 O - 20121230 -9606 100419950 HMGB1P35 - - HGNC:39175 5 - high mobility group box 1 pseudogene 35 pseudo HMGB1P35 high mobility group box 1 pseudogene 35 O - 20121230 -9606 100419951 LOC100419951 - - - 5 - uncharacterized LOC100419951 pseudo - - - - 20121230 -9606 100419952 LOC100419952 - - - Y - uncharacterized LOC100419952 pseudo - - - - 20121230 -9606 100419955 SDAD1P4 - - HGNC:39261 13 - SDA1 domain containing 1 pseudogene 4 pseudo SDAD1P4 SDA1 domain containing 1 pseudogene 4 O - 20121230 -9606 100419956 LOC100419956 - - - 20 - kinesin family member 15 pseudogene pseudo - - - - 20121230 -9606 100419957 LOC100419957 - - - 21 - ankyrin repeat domain 57 pseudogene pseudo - - - - 20121230 -9606 100419959 LOC100419959 - - - 4 - HBS1-like (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100419960 LOC100419960 - - - 4 - kelch domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100419962 ANKRD54P1 - - HGNC:39214 10 - ankyrin repeat domain 54 pseudogene 1 pseudo ANKRD54P1 ankyrin repeat domain 54 pseudogene 1 O - 20121230 -9606 100419963 LOC100419963 - - - 10 - YY1 transcription factor pseudogene pseudo - - - - 20121230 -9606 100419964 RSU1P3 - - HGNC:44392 10 - Ras suppressor protein 1 pseudogene 3 pseudo RSU1P3 Ras suppressor protein 1 pseudogene 3 O - 20121230 -9606 100419966 LOC100419966 - - - 3 - uncharacterized LOC100419966 pseudo - - - - 20121230 -9606 100419967 LOC100419967 - - - 3 - phospholipid scramblase 4 pseudogene pseudo - - - - 20121230 -9606 100419968 HMGB1P36 - - HGNC:39176 3 - high mobility group box 1 pseudogene 36 pseudo HMGB1P36 high mobility group box 1 pseudogene 36 O - 20121230 -9606 100419969 LOC100419969 - - - 3 - myosin light chain kinase pseudogene pseudo - - - - 20121230 -9606 100419971 PRELID1P2 - - HGNC:43887 6 - PRELI domain containing 1 pseudogene 2 pseudo PRELID1P2 PRELI domain containing 1 pseudogene 2 O - 20121230 -9606 100419972 HMGB1P39 - - HGNC:39186 6 - high mobility group box 1 pseudogene 39 pseudo HMGB1P39 high mobility group box 1 pseudogene 39 O - 20121230 -9606 100419974 HMGB1P17 - - HGNC:39099 6 - high mobility group box 1 pseudogene 17 pseudo HMGB1P17 high mobility group box 1 pseudogene 17 O - 20121230 -9606 100419975 LOC100419975 - - - 6 - transmembrane protein 192 pseudogene pseudo - - - - 20121230 -9606 100419977 LOC100419977 - - - 8 - myeloid leukemia factor 2 pseudogene pseudo - - - - 20121230 -9606 100419978 HMGB1P46 - - HGNC:39279 8 - high mobility group box 1 pseudogene 46 pseudo HMGB1P46 high mobility group box 1 pseudogene 46 O - 20121230 -9606 100419979 HMGB1P19 - - HGNC:39101 8 - high mobility group box 1 pseudogene 19 pseudo HMGB1P19 high mobility group box 1 pseudogene 19 O - 20121230 -9606 100419980 LOC100419980 - - - 17 - golgi membrane protein 1 pseudogene pseudo - - - - 20121230 -9606 100419984 LOC100419984 - - - 7 - uncharacterized LOC100419984 pseudo - - - - 20121230 -9606 100419985 LOC100419985 - - - 7 - uncharacterized LOC100419985 pseudo - - - - 20121230 -9606 100419986 LOC100419986 - - - 7 - uncharacterized LOC100419986 pseudo - - - - 20121209 -9606 100419987 LOC100419987 - - - 7 - uncharacterized LOC100419987 pseudo - - - - 20121230 -9606 100419989 LOC100419989 - - - 7 - THUMP domain containing 3 pseudogene pseudo - - - - 20121230 -9606 100419991 LOC100419991 - - - 7 - phosphoserine phosphatase pseudogene pseudo - - - - 20121230 -9606 100419992 LOC100419992 - - - 7 - uncharacterized LOC100419992 pseudo - - - - 20121230 -9606 100419995 HMGB1P32 - - HGNC:39123 X - high mobility group box 1 pseudogene 32 pseudo HMGB1P32 high mobility group box 1 pseudogene 32 O - 20121230 -9606 100419996 HMGB1P11 - HMGB1L11 HGNC:13316 1 - high mobility group box 1 pseudogene 11 pseudo HMGB1P11 high mobility group box 1 pseudogene 11 O - 20121230 -9606 100420002 LOC100420002 - - - 2 - PDGFA associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420003 E2F3P2 - - HGNC:3117 2 2q33-q35 E2F transcription factor 3 pseudogene 2 pseudo E2F3P2 E2F transcription factor 3 pseudogene 2 O - 20121230 -9606 100420004 HSPA8P10 - - HGNC:44925 2 - heat shock 70kDa protein 8 pseudogene 10 pseudo HSPA8P10 heat shock 70kDa protein 8 pseudogene 10 O - 20121230 -9606 100420005 LOC100420005 - - - 2 - fatty acyl CoA reductase 2 pseudogene pseudo - - - - 20121230 -9606 100420006 LOC100420006 - - - 2 - fatty acyl CoA reductase 2 pseudogene pseudo - - - - 20121230 -9606 100420008 LOC100420008 - - - 9 - transmembrane protein 126B pseudogene pseudo - - - - 20121230 -9606 100420011 LOC100420011 - - - 12 - transmembrane protein 38A pseudogene pseudo - - - - 20121230 -9606 100420012 ARF1P2 - - HGNC:39883 12 - ADP-ribosylation factor 1 pseudogene 2 pseudo ARF1P2 ADP-ribosylation factor 1 pseudogene 2 O - 20121230 -9606 100420013 HMGB1P49 - - HGNC:39282 12 - high mobility group box 1 pseudogene 49 pseudo HMGB1P49 high mobility group box 1 pseudogene 49 O - 20121230 -9606 100420015 HMGB3P29 - - HGNC:39321 19 - high mobility group box 3 pseudogene 29 pseudo HMGB3P29 high mobility group box 3 pseudogene 29 O - 20121230 -9606 100420018 LOC100420018 - - - 11 - WEE1 homolog 2 (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100420019 LOC100420019 - - - 11 - glycine-N-acyltransferase pseudogene pseudo - - - - 20121230 -9606 100420020 LOC100420020 - - - 11 - transmembrane protein 55B pseudogene pseudo - - - - 20121230 -9606 100420021 LOC100420021 - - - 11 - ankyrin repeat domain 33B pseudogene pseudo - - - - 20121230 -9606 100420022 LOC100420022 - - - 11 - ankyrin repeat domain 33B pseudogene pseudo - - - - 20121230 -9606 100420024 LOC100420024 - - - 11 - ankyrin repeat domain 33B pseudogene pseudo - - - - 20121209 -9606 100420025 LOC100420025 - - - 11 - ankyrin repeat domain 33B pseudogene pseudo - - - - 20121209 -9606 100420027 LOC100420027 - - - 5 - dedicator of cytokinesis 9 pseudogene pseudo - - - - 20121230 -9606 100420028 HSPA8P4 - - HGNC:44919 5 - heat shock 70kDa protein 8 pseudogene 4 pseudo HSPA8P4 heat shock 70kDa protein 8 pseudogene 4 O - 20121230 -9606 100420030 MORF4L1P4 - - HGNC:39257 13 - mortality factor 4 like 1 pseudogene 4 pseudo MORF4L1P4 mortality factor 4 like 1 pseudogene 4 O - 20121230 -9606 100420033 HMGB3P7 - - HGNC:39299 13 - high mobility group box 3 pseudogene 7 pseudo HMGB3P7 high mobility group box 3 pseudogene 7 O - 20121230 -9606 100420035 LOC100420035 - - - 21 - phosphoglycerate kinase 1 pseudogene pseudo - - - - 20121230 -9606 100420036 LOC100420036 - - - 4 - ret finger protein-like 4A pseudogene pseudo - - - - 20121230 -9606 100420038 HSPA8P12 - - HGNC:44927 4 - heat shock 70kDa protein 8 pseudogene 12 pseudo HSPA8P12 heat shock 70kDa protein 8 pseudogene 12 O - 20121230 -9606 100420041 HMGB1P43 - - HGNC:39191 15 - high mobility group box 1 pseudogene 43 pseudo HMGB1P43 high mobility group box 1 pseudogene 43 O - 20121230 -9606 100420042 LOC100420042 - - - 15 - cysteinyl-tRNA synthetase pseudogene pseudo - - - - 20121230 -9606 100420043 LOC100420043 - - - 10 - calcyclin binding protein pseudogene pseudo - - - - 20121230 -9606 100420044 HMGB1P7 - - HGNC:39096 10 - high mobility group box 1 pseudogene 7 pseudo HMGB1P7 high mobility group box 1 pseudogene 7 O - 20121230 -9606 100420046 PRELID1P3 - - HGNC:43888 10 - PRELI domain containing 1 pseudogene 3 pseudo PRELID1P3 PRELI domain containing 1 pseudogene 3 O - 20121230 -9606 100420047 LOC100420047 - - - 3 - RAD51 associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420048 LOC100420048 - - - 3 - poly(rC) binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100420049 HSPA8P19 - - HGNC:44935 3 - heat shock 70kDa protein 8 pseudogene 19 pseudo HSPA8P19 heat shock 70kDa protein 8 pseudogene 19 O - 20121230 -9606 100420050 LOC100420050 - - - 3 - downstream neighbor of SON pseudogene pseudo - - - - 20121230 -9606 100420051 HSPA8P15 - - HGNC:44930 6 - heat shock 70kDa protein 8 pseudogene 15 pseudo HSPA8P15 heat shock 70kDa protein 8 pseudogene 15 O - 20121230 -9606 100420052 LOC100420052 - - - 6 - poly(rC) binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100420053 LOC100420053 - - - 8 - transmembrane protein 126A pseudogene pseudo - - - - 20121230 -9606 100420054 LOC100420054 - - - 8 - NSFL1 (p97) cofactor (p47) pseudogene pseudo - - - - 20121230 -9606 100420055 LOC100420055 - - - 8 - ret finger protein-like 4A pseudogene pseudo - - - - 20121230 -9606 100420057 LOC100420057 - - - 8 - aconitase 2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 100420058 LOC100420058 - - - 8 - ret finger protein-like 4A pseudogene pseudo - - - - 20121230 -9606 100420059 LOC100420059 - - - 8 - ret finger protein-like 4A pseudogene pseudo - - - - 20121230 -9606 100420060 LOC100420060 - - - 17 - stem-loop binding protein pseudogene pseudo - - - - 20121230 -9606 100420061 LOC100420061 - - - 17 - adenylosuccinate synthase pseudogene pseudo - - - - 20121230 -9606 100420062 LOC100420062 - - - 17 - transmembrane protein 160 pseudogene pseudo - - - - 20121230 -9606 100420063 HMGB1P24 - - HGNC:39115 17 - high mobility group box 1 pseudogene 24 pseudo HMGB1P24 high mobility group box 1 pseudogene 24 O - 20121230 -9606 100420064 LOC100420064 - - - 17 - density-regulated protein pseudogene pseudo - - - - 20121230 -9606 100420066 LOC100420066 - - - 16 - transmembrane protein 111 pseudogene pseudo - - - - 20121230 -9606 100420067 LOC100420067 - - - 16 - transmembrane protein 231 pseudogene pseudo - - - - 20121230 -9606 100420072 EI24P4 - - HGNC:44589 7 - etoposide induced 2.4 pseudogene 4 pseudo EI24P4 etoposide induced 2.4 pseudogene 4 O - 20121230 -9606 100420073 LOC100420073 - - - 7 - dpy-19-like 4 (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100420074 LOC100420074 - - - 7 - transmembrane protein 183A pseudogene pseudo - - - - 20121230 -9606 100420075 LOC100420075 - - - X - phospholipase C, epsilon 1 pseudogene pseudo - - - - 20121230 -9606 100420080 HSPA8P7 - - HGNC:44922 X - heat shock 70kDa protein 8 pseudogene 7 pseudo HSPA8P7 heat shock 70kDa protein 8 pseudogene 7 O - 20121230 -9606 100420083 LOC100420083 - - - X - ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 100420084 LOC100420084 - - - X - ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 100420089 LOC100420089 - - - X - ornithine aminotransferase pseudogene pseudo - - - - 20121230 -9606 100420092 LOC100420092 - - - 1 - poly(rC) binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100420095 LOC100420095 - - - 14 - uncharacterized LOC100420095 pseudo - - - - 20121230 -9606 100420096 LOC100420096 - - - 14 - IGF-like family receptor 1 pseudogene pseudo - - - - 20121230 -9606 100420097 LOC100420097 - - - 14 - uncharacterized LOC100420097 pseudo - - - - 20121230 -9606 100420098 LOC100420098 - - - 14 - kinesin family member 20B pseudogene pseudo - - - - 20120720 -9606 100420100 HMGB1P34 - - HGNC:23342 14 - high mobility group box 1 pseudogene 34 pseudo HMGB1P34 high mobility group box 1 pseudogene 34 O - 20121230 -9606 100420103 LOC100420103 - - - 22 - uncharacterized LOC100420103 pseudo - - - - 20121230 -9606 100420108 LOC100420108 - - - 2 - RNA binding motif protein 7 pseudogene pseudo - - - - 20121230 -9606 100420109 LOC100420109 - - - 2 - WW domain binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100420110 LOC100420110 - - - 2 - SCY1-like 2 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100420113 LOC100420113 - - - 9 - Kruppel-like factor 4 (gut) pseudogene pseudo - - - - 20121230 -9606 100420114 LOC100420114 - - - 9 - SPATA31 subfamily D, member 1 pseudogene pseudo - - - - 20121230 -9606 100420116 LOC100420116 - - - 12 - transmembrane protein 132B pseudogene pseudo - - - - 20121230 -9606 100420117 LOC100420117 - - - 12 - methionyl aminopeptidase 1 pseudogene pseudo - - - - 20121230 -9606 100420118 LOC100420118 - - - 12 - transmembrane protein 132C pseudogene pseudo - - - - 20121230 -9606 100420119 LOC100420119 - - - 12 - transmembrane protein 132B pseudogene pseudo - - - - 20121230 -9606 100420121 LOC100420121 - - - 11 - MAS-related GPR, member X3 pseudogene pseudo - - - - 20121230 -9606 100420122 LOC100420122 - - - 11 - dihydropyrimidinase-like 5 pseudogene pseudo - - - - 20121230 -9606 100420123 LOC100420123 - - - 11 - MAS-related GPR, member X2 pseudogene pseudo - - - - 20121230 -9606 100420127 LOC100420127 - - - 5 - mediator complex subunit 13 pseudogene pseudo - - - - 20121230 -9606 100420130 LOC100420130 - - - 5 - RB1-inducible coiled-coil 1 pseudogene pseudo - - - - 20121230 -9606 100420133 HSPA8P2 - - HGNC:39806 13 - heat shock 70kDa protein 8 pseudogene 2 pseudo HSPA8P2 heat shock 70kDa protein 8 pseudogene 2 O - 20121230 -9606 100420143 HSPA8P3 - - HGNC:44918 10 - heat shock 70kDa protein 8 pseudogene 3 pseudo HSPA8P3 heat shock 70kDa protein 8 pseudogene 3 O - 20121230 -9606 100420144 LOC100420144 - - - 3 - mediator of cell motility 1 pseudogene pseudo - - - - 20121230 -9606 100420149 LOC100420149 - - - 6 - beclin 1, autophagy related pseudogene pseudo - - - - 20121230 -9606 100420155 RPL7L1P2 - - HGNC:39484 7 - ribosomal protein L7-like 1 pseudogene 2 pseudo RPL7L1P2 ribosomal protein L7-like 1 pseudogene 2 O - 20121230 -9606 100420158 FTLP16 - - HGNC:37966 X - ferritin, light polypeptide pseudogene 16 pseudo FTLP16 ferritin, light polypeptide pseudogene 16 O - 20121230 -9606 100420159 LOC100420159 - - - X - ribonucleotide reductase M2 pseudogene pseudo - - - - 20121230 -9606 100420162 LOC100420162 - - - X - nuclear RNA export factor 5 pseudogene pseudo - - - - 20121230 -9606 100420166 LOC100420166 - - - 1 - ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 100420170 LOC100420170 - - - 1 - ribosomal protein L7-like 1 pseudogene pseudo - - - - 20121230 -9606 100420171 LOC100420171 - - - 14 - fatty acyl CoA reductase 2 pseudogene pseudo - - - - 20121230 -9606 100420172 LOC100420172 - - - 14 - fatty acyl CoA reductase 2 pseudogene pseudo - - - - 20121209 -9606 100420174 LOC100420174 - - - 14 - centrosomal protein 170kDa pseudogene pseudo - - - - 20121230 -9606 100420175 LOC100420175 - - - 22 - fatty acyl CoA reductase 2 pseudogene pseudo - - - - 20121209 -9606 100420177 LOC100420177 - - - 22 - kelch-like 12 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420178 LOC100420178 - - - 22 - E2F transcription factor 6 pseudogene pseudo - - - - 20121209 -9606 100420180 LOC100420180 - - - 2 - DBF4 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100420186 LOC100420186 - - - 12 - WW domain binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100420187 LOC100420187 - - - 19 - YME1-like 1 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100420189 SEPHS1P3 - - HGNC:42163 5 - selenophosphate synthetase 1 pseudogene 3 pseudo SEPHS1P3 selenophosphate synthetase 1 pseudogene 3 O - 20121230 -9606 100420190 SEPHS1P5 - - HGNC:42165 5 - selenophosphate synthetase 1 pseudogene 5 pseudo SEPHS1P5 selenophosphate synthetase 1 pseudogene 5 O - 20121230 -9606 100420198 LUC7L3P1 - - HGNC:39790 13 - LUC7-like 3 (S. cerevisiae) pseudogene 1 pseudo LUC7L3P1 LUC7-like 3 (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100420200 RPL7L1P12 - - HGNC:39811 13 - ribosomal protein L7-like 1 pseudogene 12 pseudo RPL7L1P12 ribosomal protein L7-like 1 pseudogene 12 O - 20121230 -9606 100420201 RPL7L1P6 - - HGNC:39488 13 - ribosomal protein L7-like 1 pseudogene 6 pseudo RPL7L1P6 ribosomal protein L7-like 1 pseudogene 6 O - 20121230 -9606 100420203 CICP16 - - HGNC:38550 4 - capicua homolog (Drosophila) pseudogene 16 pseudo CICP16 capicua homolog (Drosophila) pseudogene 16 O - 20121230 -9606 100420205 LOC100420205 - - - 15 - ribonucleotide reductase M2 pseudogene pseudo - - - - 20121230 -9606 100420206 RPL36AP55 - - HGNC:44939 10 - ribosomal protein L36a pseudogene 55 pseudo RPL36AP55 ribosomal protein L36a pseudogene 55 O - 20121230 -9606 100420207 LOC100420207 - - - 10 - mediator complex subunit 28 pseudogene pseudo - - - - 20121230 -9606 100420211 LOC100420211 - - - 6 - SH3-domain binding protein 4 pseudogene pseudo - - - - 20121230 -9606 100420213 RBM11P1 - - HGNC:43743 6 - RNA binding motif protein 11 pseudogene 1 pseudo RBM11P1 RNA binding motif protein 11 pseudogene 1 O - 20121230 -9606 100420214 LOC100420214 - - - 6 - rhomboid domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100420215 LOC100420215 - - - 8 - RNA binding motif protein 45 pseudogene pseudo - - - - 20121230 -9606 100420216 ALOXE3P1 - - HGNC:44238 17 - arachidonate lipoxygenase 3 pseudogene 1 pseudo ALOXE3P1 arachidonate lipoxygenase 3 pseudogene 1 O - 20121230 -9606 100420223 RNMTL1P2 - - HGNC:44906 7 - RNA methyltransferase like 1 pseudogene 2 pseudo RNMTL1P2 RNA methyltransferase like 1 pseudogene 2 O - 20121230 -9606 100420224 CICP12 - - HGNC:37905 7 - capicua homolog (Drosophila) pseudogene 12 pseudo CICP12 capicua homolog (Drosophila) pseudogene 12 O - 20121230 -9606 100420226 LOC100420226 - - - 7 - argininosuccinate synthase 1 pseudogene pseudo - - - - 20121230 -9606 100420228 LOC100420228 - - - X - melanoma antigen family C, 3 pseudogene pseudo - - - - 20121230 -9606 100420230 LOC100420230 - - - X - melanoma antigen family C, 3 pseudogene pseudo - - - - 20121230 -9606 100420245 LOC100420245 - - - X - melanoma antigen family B, 3 pseudogene pseudo - - - - 20121230 -9606 100420247 LOC100420247 - - - X - mitochondrial fission factor pseudogene pseudo - - - - 20121230 -9606 100420249 LOC100420249 - - - X - melanoma antigen family C, 3 pseudogene pseudo - - - - 20121230 -9606 100420250 LOC100420250 - - - X - melanoma antigen family A, 4 pseudogene pseudo - - - - 20121230 -9606 100420251 LOC100420251 - - - 1 - mitochondrial fission factor pseudogene pseudo - - - - 20121230 -9606 100420252 LOC100420252 - - - 1 1p34.2 transmembrane channel-like 6 pseudogene pseudo - - - - 20121230 -9606 100420253 LOC100420253 - - - 1 - C-terminal binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100420254 LOC100420254 - - - 1 - T, brachyury homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100420255 LOC100420255 - - - 1 - collagen, type XXII, alpha 1 pseudogene pseudo - - - - 20121230 -9606 100420257 LOC100420257 - - - 1 - capicua homolog (Drosophila) pseudogene pseudo - - - - 20121209 -9606 100420258 PLA2G12AP1 - - HGNC:39248 1 - phospholipase A2, group XIIA pseudogene 1 pseudo PLA2G12AP1 phospholipase A2, group XIIA pseudogene 1 O - 20121230 -9606 100420259 GDI2P2 - - HGNC:37976 1 - GDP dissociation inhibitor 2 pseudogene 2 pseudo GDI2P2 GDP dissociation inhibitor 2 pseudogene 2 O - 20121230 -9606 100420260 NOTCH2P1 - - HGNC:44253 1 - notch 2 pseudogene 1 pseudo NOTCH2P1 notch 2 pseudogene 1 O - 20121230 -9606 100420262 LOC100420262 - - - 1 - mitochondrial fission factor pseudogene pseudo - - - - 20121230 -9606 100420263 LOC100420263 - - - 1 - capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420267 LOC100420267 - - - 22 - l(3)mbt-like 4 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420269 LOC100420269 - - - 9 - fructose-1,6-bisphosphatase 2 pseudogene pseudo - - - - 20121230 -9606 100420273 LOC100420273 - - - 19 - RAD54-like 2 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100420275 LOC100420275 - - - 5 - slowmo homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420277 LOC100420277 - - - 5 - slowmo homolog 2 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420281 PLA2G12AP2 - - HGNC:39249 13 - phospholipase A2, group XIIA pseudogene 2 pseudo PLA2G12AP2 phospholipase A2, group XIIA pseudogene 2 O - 20121230 -9606 100420287 SEC63P2 - - HGNC:41954 4 - SEC63 homolog (S. cerevisiae) pseudogene 2 pseudo SEC63P2 SEC63 homolog (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100420289 LOC100420289 - - - 4 - TBC1 domain family, member 3H pseudogene pseudo - - - - 20121230 -9606 100420292 SEPHS1P2 - - HGNC:42162 15 - selenophosphate synthetase 1 pseudogene 2 pseudo SEPHS1P2 selenophosphate synthetase 1 pseudogene 2 O - 20121230 -9606 100420293 LOC100420293 - - - 10 - capicua homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420295 RNMTL1P1 - - HGNC:44905 10 - RNA methyltransferase like 1 pseudogene 1 pseudo RNMTL1P1 RNA methyltransferase like 1 pseudogene 1 O - 20121230 -9606 100420298 LOC100420298 - - - 3 - makorin ring finger protein 1 pseudogene pseudo - - - - 20121230 -9606 100420300 FTH1P23 - FTHL23 HGNC:37641 3 - ferritin, heavy polypeptide 1 pseudogene 23 pseudo FTH1P23 ferritin, heavy polypeptide 1 pseudogene 23 O - 20121230 -9606 100420303 FTH1P26 - FTHL26 HGNC:37644 6 - ferritin, heavy polypeptide 1 pseudogene 26 pseudo FTH1P26 ferritin, heavy polypeptide 1 pseudogene 26 O - 20121230 -9606 100420304 LOC100420304 - - - 6 - alpha-methylacyl-CoA racemase pseudogene pseudo - - - - 20121230 -9606 100420305 LOC100420305 - - - 6 - unc-93 homolog A (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100420307 LOC100420307 - - - 8 - N-terminal asparagine amidase pseudogene pseudo - - - - 20121230 -9606 100420308 ITM2BP1 - HsT33912|ITM2BP HGNC:20919 17 - integral membrane protein 2B pseudogene 1 pseudo ITM2BP1 integral membrane protein 2B pseudogene 1 O - 20121230 -9606 100420311 LOC100420311 - - - 17 - TBC1 domain family, member 3 pseudogene pseudo - - - - 20121230 -9606 100420317 LOC100420317 - - - X - charged multivesicular body protein 5 pseudogene pseudo - - - - 20121230 -9606 100420318 LOC100420318 - - - X - melanoma antigen family A, 12 pseudogene pseudo - - - - 20121230 -9606 100420320 LOC100420320 - - - X - kinesin heavy chain member 2A pseudogene pseudo - - - - 20121230 -9606 100420321 LOC100420321 - - - X - melanoma antigen family A, 11 pseudogene pseudo - - - - 20121230 -9606 100420322 LOC100420322 - - - X - melanoma antigen family A, 10 pseudogene pseudo - - - - 20121230 -9606 100420323 LOC100420323 - - - X - melanoma antigen family B, 18 pseudogene pseudo - - - - 20121230 -9606 100420324 LOC100420324 - - - X - melanoma antigen family A, 10 pseudogene pseudo - - - - 20121230 -9606 100420325 LOC100420325 - - - X - melanoma antigen family B, 16 pseudogene pseudo - - - - 20121230 -9606 100420326 LOC100420326 - - - X - ferritin, heavy polypeptide 1 pseudogene pseudo - - - - 20121230 -9606 100420331 LOC100420331 - - - X - melanoma antigen family A, 10 pseudogene pseudo - - - - 20121230 -9606 100420334 LOC100420334 - - - X - melanoma antigen family A, 11 pseudogene pseudo - - - - 20121230 -9606 100420336 LOC100420336 - - - 1 - ferritin, heavy polypeptide 1 pseudogene pseudo - - - - 20121230 -9606 100420338 LOC100420338 - - - 1 - charged multivesicular body protein 5 pseudogene pseudo - - - - 20121230 -9606 100420339 LOC100420339 - - - 1 - opioid growth factor receptor pseudogene pseudo - - - - 20121209 -9606 100420341 SEC63P1 - - HGNC:41953 1 - SEC63 homolog (S. cerevisiae) pseudogene 1 pseudo SEC63P1 SEC63 homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100420342 CHIAP1 - - HGNC:44462 1 - chitinase, acidic pseudogene 1 pseudo CHIAP1 chitinase, acidic pseudogene 1 O - 20121230 -9606 100420343 LOC100420343 - - - 14 - translin-associated factor X pseudogene pseudo - - - - 20121230 -9606 100420347 LOC100420347 - - - 14 - polycomb group ring finger 3 pseudogene pseudo - - - - 20121230 -9606 100420351 LOC100420351 - - - 2 - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20121230 -9606 100420353 LOC100420353 - - - 2 - tripartite motif containing 60 pseudogene pseudo - - - - 20121230 -9606 100420354 LOC100420354 - - - 9 - extracellular matrix protein 1 pseudogene pseudo - - - - 20121230 -9606 100420356 LOC100420356 - - - 12 - N-terminal asparagine amidase pseudogene pseudo - - - - 20121230 -9606 100420358 LOC100420358 - - - 11 - BUD13 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100420359 LOC100420359 - - - 11 - replication protein A2, 32kDa pseudogene pseudo - - - - 20121230 -9606 100420362 TRIM60P1Y - TRIM60P1|TRIM60PY1 HGNC:38403 Y - tripartite motif containing 60 pseudogene 1, Y-linked pseudo TRIM60P1Y tripartite motif containing 60 pseudogene 1, Y-linked O - 20121230 -9606 100420363 TRIM60P2Y - TRIM60P2|TRIM60PY2 HGNC:38405 Y - tripartite motif containing 60 pseudogene 2, Y-linked pseudo TRIM60P2Y tripartite motif containing 60 pseudogene 2, Y-linked O - 20121230 -9606 100420364 TRIM60P3Y - TRIM60P3|TRIM60PY3 HGNC:38409 Y - tripartite motif containing 60 pseudogene 3, Y-linked pseudo TRIM60P3Y tripartite motif containing 60 pseudogene 3, Y-linked O - 20121230 -9606 100420367 TRIM60P4Y - TRIM60P4|TRIM60PY4 HGNC:38425 Y - tripartite motif containing 60 pseudogene 4, Y-linked pseudo TRIM60P4Y tripartite motif containing 60 pseudogene 4, Y-linked O - 20121230 -9606 100420368 TRIM60P5Y - TRIM60P5|TRIM60PY5 HGNC:38430 Y - tripartite motif containing 60 pseudogene 5, Y-linked pseudo TRIM60P5Y tripartite motif containing 60 pseudogene 5, Y-linked O - 20121209 -9606 100420369 TRIM60P6Y - TRIM60P6|TRIM60PY6 HGNC:38432 Y - tripartite motif containing 60 pseudogene 6, Y-linked pseudo TRIM60P6Y tripartite motif containing 60 pseudogene 6, Y-linked O - 20121209 -9606 100420370 TRIM60P7Y - TRIM60P7|TRIM60PY7 HGNC:38433 Y - tripartite motif containing 60 pseudogene 7, Y-linked pseudo TRIM60P7Y tripartite motif containing 60 pseudogene 7, Y-linked O - 20121209 -9606 100420373 TRIM60P8Y - TRIM60P8|TRIM60PY8 HGNC:38458 Y - tripartite motif containing 60 pseudogene 8, Y-linked pseudo TRIM60P8Y tripartite motif containing 60 pseudogene 8, Y-linked O - 20121209 -9606 100420374 TRIM60P9Y - TRIM60P9|TRIM60PY9 HGNC:38459 Y - tripartite motif containing 60 pseudogene 9, Y-linked pseudo TRIM60P9Y tripartite motif containing 60 pseudogene 9, Y-linked O - 20121209 -9606 100420376 TRIM60P10Y - TRIM60P10|TRIM60PY10 HGNC:38462 Y - tripartite motif containing 60 pseudogene 10, Y-linked pseudo TRIM60P10Y tripartite motif containing 60 pseudogene 10, Y-linked O - 20121209 -9606 100420377 TRIM60P11Y - TRIM60P11|TRIM60PY11 HGNC:38463 Y - tripartite motif containing 60 pseudogene 11, Y-linked pseudo TRIM60P11Y tripartite motif containing 60 pseudogene 11, Y-linked O - 20121209 -9606 100420378 TRIM60P12Y - TRIM60P12|TRIM60PY12 HGNC:38465 Y - tripartite motif containing 60 pseudogene 12, Y-linked pseudo TRIM60P12Y tripartite motif containing 60 pseudogene 12, Y-linked O - 20121209 -9606 100420385 LOC100420385 - - - 4 - tripartite motif-containing 75 pseudogene pseudo - - - - 20121230 -9606 100420386 LOC100420386 - - - 4 - tripartite motif-containing 75 pseudogene pseudo - - - - 20121230 -9606 100420389 LOC100420389 - - - 10 - N-terminal asparagine amidase pseudogene pseudo - - - - 20121230 -9606 100420392 BTBD7P2 - - HGNC:44876 10 - BTB (POZ) domain containing 7 pseudogene 2 pseudo BTBD7P2 BTB (POZ) domain containing 7 pseudogene 2 O - 20121230 -9606 100420393 TPMTP2 - - HGNC:44565 3 - thiopurine S-methyltransferase pseudogene 2 pseudo TPMTP2 thiopurine S-methyltransferase pseudogene 2 O - 20121230 -9606 100420394 LOC100420394 - - - 3 - 5'-nucleotidase, cytosolic III pseudogene pseudo - - - - 20121230 -9606 100420401 LOC100420401 - - - 6 - BTB (POZ) domain containing 10 pseudogene pseudo - - - - 20121230 -9606 100420403 LOC100420403 - - - 8 - K(lysine) acetyltransferase 2B pseudogene pseudo - - - - 20121230 -9606 100420404 LOC100420404 - - - 8 - DENN/MADD domain containing 4A pseudogene pseudo - - - - 20121230 -9606 100420405 TRIM60P15 - - HGNC:38487 8 - tripartite motif containing 60 pseudogene 15 pseudo TRIM60P15 tripartite motif containing 60 pseudogene 15 O - 20121230 -9606 100420406 IRF5P1 - - HGNC:41981 8 - interferon regulatory factor 5 pseudogene 1 pseudo IRF5P1 interferon regulatory factor 5 pseudogene 1 O - 20121230 -9606 100420408 LOC100420408 - - - 17 - TBC1 domain family, member 29 pseudogene pseudo - - - - 20121230 -9606 100420410 H3F3BP2 - - HGNC:42979 17 - H3 histone, family 3B (H3.3B) pseudogene 2 pseudo H3F3BP2 H3 histone, family 3B (H3.3B) pseudogene 2 O - 20121230 -9606 100420412 TRIM60P16 - - HGNC:38488 7 - tripartite motif containing 60 pseudogene 16 pseudo TRIM60P16 tripartite motif containing 60 pseudogene 16 O - 20121230 -9606 100420413 LOC100420413 - - - 7 - G protein-coupled receptor 141 pseudogene pseudo - - - - 20121230 -9606 100420414 TRIM60P17 - - HGNC:38489 7 - tripartite motif containing 60 pseudogene 17 pseudo TRIM60P17 tripartite motif containing 60 pseudogene 17 O - 20121230 -9606 100420415 TRIM60P18 - - HGNC:38490 7 - tripartite motif containing 60 pseudogene 18 pseudo TRIM60P18 tripartite motif containing 60 pseudogene 18 O - 20121230 -9606 100420418 LOC100420418 - - - 1 - tripartite motif containing 60 pseudogene pseudo - - - - 20121230 -9606 100420420 LOC100420420 - - - 1 - tripartite motif containing 39 pseudogene pseudo - - - - 20121230 -9606 100420423 LOC100420423 - - - 1 - FK506 binding protein 8, 38kDa pseudogene pseudo - - - - 20121230 -9606 100420424 LOC100420424 - - - 14 - Vac14 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100420428 LOC100420428 - - - 2 - ubiquitin specific peptidase 21 pseudogene pseudo - - - - 20121230 -9606 100420429 LOC100420429 - - - 2 - ubiquitin specific peptidase 15 pseudogene pseudo - - - - 20121230 -9606 100420430 LOC100420430 - - - 2 - glioblastoma amplified sequence pseudogene pseudo - - - - 20121230 -9606 100420432 LOC100420432 - - - 2 - ubiquitin specific peptidase 26 pseudogene pseudo - - - - 20121230 -9606 100420434 LOC100420434 - - - 2 - stress-induced-phosphoprotein 1 pseudogene pseudo - - - - 20121230 -9606 100420435 LOC100420435 - - - 2 - ubiquitin specific peptidase 21 pseudogene pseudo - - - - 20121230 -9606 100420436 LOC100420436 - - - 2 - stress-induced-phosphoprotein 1 pseudogene pseudo - - - - 20121230 -9606 100420437 LOC100420437 - - - 9 - ubiquitin specific peptidase 12 pseudogene pseudo - - - - 20121230 -9606 100420438 LOC100420438 - - - 9 - ubiquitin specific peptidase 12 pseudogene pseudo - - - - 20121230 -9606 100420439 LOC100420439 - - - 9 - ubiquitin specific peptidase 12 pseudogene pseudo - - - - 20121230 -9606 100420440 LOC100420440 - - - 9 - ubiquitin specific peptidase 12 pseudogene pseudo - - - - 20121230 -9606 100420442 LOC100420442 - - - 12 - tripartite motif-containing 75 pseudogene pseudo - - - - 20121230 -9606 100420446 LOC100420446 - - - 11 - tripartite motif containing 48 pseudogene pseudo - - - - 20121230 -9606 100420449 LOC100420449 - - - 11 - tripartite motif containing 48 pseudogene pseudo - - - - 20121230 -9606 100420450 SERBP1P6 - - HGNC:44635 5 - SERPINE1 mRNA binding protein 1 pseudogene 6 pseudo SERBP1P6 SERPINE1 mRNA binding protein 1 pseudogene 6 O - 20121230 -9606 100420457 NT5CP3 - - HGNC:39789 13 - 5',3'-nucleotidase, cytosolic pseudogene 3 pseudo NT5CP3 5',3'-nucleotidase, cytosolic pseudogene 3 O - 20121230 -9606 100420458 TATDN2P3 - - HGNC:39256 13 - TatD DNase domain containing 2 pseudogene 3 pseudo TATDN2P3 TatD DNase domain containing 2 pseudogene 3 O - 20121230 -9606 100420462 LDHAL6EP - - HGNC:44241 4 - lactate dehydrogenase A-like 6E, pseudogene pseudo LDHAL6EP lactate dehydrogenase A-like 6E, pseudogene O - 20121230 -9606 100420464 LOC100420464 - - - 4 - salvador homolog 1 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420466 LOC100420466 - - - 15 - dual specificity phosphatase 3 pseudogene pseudo - - - - 20121230 -9606 100420467 LOC100420467 - - - 10 - glyoxalase domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100420471 LOC100420471 - - - 3 - ADP-ribosylation factor-like 4A pseudogene pseudo - - - - 20121230 -9606 100420473 LOC100420473 - - - 3 - dual specificity phosphatase 12 pseudogene pseudo - - - - 20121230 -9606 100420476 SSR1P1 - - HGNC:39273 6 - signal sequence receptor, alpha pseudogene 1 pseudo SSR1P1 signal sequence receptor, alpha pseudogene 1 O - 20121230 -9606 100420477 LDHAL6FP - - HGNC:44240 6 - lactate dehydrogenase A-like 6F, pseudogene pseudo LDHAL6FP lactate dehydrogenase A-like 6F, pseudogene O - 20121230 -9606 100420480 LOC100420480 - - - 8 - polo-like kinase 4 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100420482 LOC100420482 - - - 17 - G protein-coupled receptor 160 pseudogene pseudo - - - - 20121230 -9606 100420484 LOC100420484 - - - 18 - thymocyte selection associated pseudogene pseudo - - - - 20121230 -9606 100420489 LOC100420489 - - - 16 - tripartite motif containing 13 pseudogene pseudo - - - - 20121230 -9606 100420494 LOC100420494 - - - 1 - ADP-ribosylation factor-like 16 pseudogene pseudo - - - - 20121230 -9606 100420499 LOC100420499 - - - 2 - BAI1-associated protein 2-like 1 pseudogene pseudo - - - - 20121230 -9606 100420500 LOC100420500 - - - 2 - galactose-3-O-sulfotransferase 1 pseudogene pseudo - - - - 20121230 -9606 100420501 YRDCP1 - - HGNC:39919 9 - yrdC domain containing (E. coli) pseudogene 1 pseudo YRDCP1 yrdC domain containing (E. coli) pseudogene 1 O - 20121230 -9606 100420502 LOC100420502 - - - 9 - cell division cycle associated 4 pseudogene pseudo - - - - 20121230 -9606 100420503 LOC100420503 - - - 12 - egl nine homolog 3 (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100420505 ADAM1B - - HGNC:44366 12 - ADAM metallopeptidase domain 1B, pseudogene pseudo ADAM1B ADAM metallopeptidase domain 1B, pseudogene O - 20121230 -9606 100420508 LDHAL6DP - - HGNC:44239 11 - lactate dehydrogenase A-like 6D, pseudogene pseudo LDHAL6DP lactate dehydrogenase A-like 6D, pseudogene O - 20121230 -9606 100420509 LOC100420509 - - - 11 - X-linked inhibitor of apoptosis pseudogene pseudo - - - - 20121230 -9606 100420510 LOC100420510 - - - 11 - myotubularin related protein 12 pseudogene pseudo - - - - 20121230 -9606 100420512 RPEP1 - - HGNC:44520 5 - ribulose-5-phosphate-3-epimerase pseudogene 1 pseudo RPEP1 ribulose-5-phosphate-3-epimerase pseudogene 1 O - 20121230 -9606 100420513 LOC100420513 - - - 5 - TNF receptor-associated factor 4 pseudogene pseudo - - - - 20121230 -9606 100420514 LOC100420514 - - - 5 - coiled-coil domain containing 86 pseudogene pseudo - - - - 20121230 -9606 100420515 LOC100420515 - - - 5 - CTD nuclear envelope phosphatase 1 pseudogene pseudo - - - - 20121230 -9606 100420519 RANP8 - - HGNC:39863 13 - RAN, member RAS oncogene family pseudogene 8 pseudo RANP8 RAN, member RAS oncogene family pseudogene 8 O - 20121230 -9606 100420520 MOCS3P2 - - HGNC:39444 13 - molybdenum cofactor synthesis 3 pseudogene 2 pseudo MOCS3P2 molybdenum cofactor synthesis 3 pseudogene 2 O - 20121230 -9606 100420526 LOC100420526 - - - 10 - PRKC, apoptosis, WT1, regulator pseudogene pseudo - - - - 20121230 -9606 100420527 RBBP4P2 - - HGNC:42369 3 - retinoblastoma binding protein 4 pseudogene 2 pseudo RBBP4P2 retinoblastoma binding protein 4 pseudogene 2 O - 20121230 -9606 100420528 LOC100420528 - - - 3 - CTD nuclear envelope phosphatase 1 pseudogene pseudo - - - - 20121230 -9606 100420530 LOC100420530 - - - 6 - mucin 4, cell surface associated pseudogene pseudo - - - - 20121230 -9606 100420531 LOC100420531 - - - 6 - abhydrolase domain containing 10 pseudogene pseudo - - - - 20121230 -9606 100420532 LOC100420532 - - - 8 - ribosomal protein S4, Y-linked 2 pseudogene pseudo - - - - 20121230 -9606 100420534 LOC100420534 - - - 8 - Rho GTPase activating protein 20 pseudogene pseudo - - - - 20121230 -9606 100420535 LOC100420535 - - - 16 - PRKC, apoptosis, WT1, regulator pseudogene pseudo - - - - 20121230 -9606 100420536 LOC100420536 - - - 16 - islet cell autoantigen 1, 69kDa pseudogene pseudo - - - - 20121230 -9606 100420539 LOC100420539 - - - 7 - FK506 binding protein 10, 65 kDa pseudogene pseudo - - - - 20121230 -9606 100420540 LOC100420540 - - - 7 - cell division cycle associated 8 pseudogene pseudo - - - - 20121230 -9606 100420541 LOC100420541 - - - 7 - abhydrolase domain containing 15 pseudogene pseudo - - - - 20121230 -9606 100420545 LOC100420545 - - - 7 - abhydrolase domain containing 15 pseudogene pseudo - - - - 20121230 -9606 100420546 LOC100420546 - - - 7 - general transcription factor IIi pseudogene pseudo - - - - 20121230 -9606 100420547 LOC100420547 - - - 7 - GTF2I repeat domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100420548 LOC100420548 - - - 7 - GTF2I repeat domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100420549 LOC100420549 - - - 7 - coiled-coil domain containing 41 pseudogene pseudo - - - - 20121230 -9606 100420551 LOC100420551 - - - X - synovial sarcoma, X breakpoint 5 pseudogene pseudo - - - - 20121230 -9606 100420552 RBBP8P1 - - HGNC:39583 X - retinoblastoma binding protein 8 pseudogene 1 pseudo RBBP8P1 retinoblastoma binding protein 8 pseudogene 1 O - 20121230 -9606 100420555 RPEP3 - - HGNC:44522 1 - ribulose-5-phosphate-3-epimerase pseudogene 3 pseudo RPEP3 ribulose-5-phosphate-3-epimerase pseudogene 3 O - 20121230 -9606 100420556 LOC100420556 - - - 1 - carnitine palmitoyltransferase 2 pseudogene pseudo - - - - 20121230 -9606 100420557 NSRP1P1 - CCDC55P1 HGNC:38087 1 - nuclear speckle splicing regulatory protein 1 pseudogene 1 pseudo NSRP1P1 nuclear speckle splicing regulatory protein 1 pseudogene 1 O - 20121230 -9606 100420558 LOC100420558 - - - 1 - cell division cycle associated 4 pseudogene pseudo - - - - 20121230 -9606 100420563 LOC100420563 - - - 14 - ADAM metallopeptidase domain 20 pseudogene pseudo - - - - 20121230 -9606 100420567 PGAM1P6 - - HGNC:42453 2 - phosphoglycerate mutase 1 pseudogene 6 pseudo PGAM1P6 phosphoglycerate mutase 1 pseudogene 6 O - 20121230 -9606 100420568 LOC100420568 - - - 2 - voltage-dependent anion channel 1 pseudogene pseudo - - - - 20121230 -9606 100420569 LOC100420569 - - - 2 - ribosomal L24 domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100420571 LOC100420571 - - - 2 - RAB1A, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100420572 LOC100420572 - - - 2 - glutathione S-transferase alpha 5 pseudogene pseudo - - - - 20121230 -9606 100420574 LOC100420574 - - - 2 - voltage-dependent anion channel 2 pseudogene pseudo - - - - 20121230 -9606 100420575 LOC100420575 - - - 2 - leucine rich repeat containing 57 pseudogene pseudo - - - - 20121230 -9606 100420576 LOC100420576 - - - 9 - death-associated protein kinase 1 pseudogene pseudo - - - - 20121230 -9606 100420580 LOC100420580 - - - 12 - taste receptor, type 2, member 7 pseudogene pseudo - - - - 20121230 -9606 100420583 LOC100420583 - - - 12 - taste receptor, type 2, member 7 pseudogene pseudo - - - - 20121230 -9606 100420584 LOC100420584 - - - 12 - microtubule-associated protein 6 pseudogene pseudo - - - - 20121230 -9606 100420586 LOC100420586 - - - 19 - Rho GTPase activating protein 33 pseudogene pseudo - - - - 20121230 -9606 100420587 LOC100420587 - - - 19 - SHC SH2-domain binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100420588 LOC100420588 - - - 11 - coiled-coil domain containing 58 pseudogene pseudo - - - - 20121230 -9606 100420589 LOC100420589 - - - 11 - leucine rich repeat containing 6 pseudogene pseudo - - - - 20121230 -9606 100420590 RPEP6 - - HGNC:44525 11 - ribulose-5-phosphate-3-epimerase pseudogene 6 pseudo RPEP6 ribulose-5-phosphate-3-epimerase pseudogene 6 O - 20121230 -9606 100420591 LOC100420591 - - - 11 - oxysterol binding protein-like 9 pseudogene pseudo - - - - 20121230 -9606 100420593 LOC100420593 - - - 5 - general transcription factor IIIA pseudogene pseudo - - - - 20121230 -9606 100420607 RBBP8P2 - - HGNC:39584 13 - retinoblastoma binding protein 8 pseudogene 2 pseudo RBBP8P2 retinoblastoma binding protein 8 pseudogene 2 O - 20121230 -9606 100420608 RPP40P2 - - HGNC:39770 13 - ribonuclease P/MRP 40kDa subunit pseudogene 2 pseudo RPP40P2 ribonuclease P/MRP 40kDa subunit pseudogene 2 O - 20121230 -9606 100420611 LOC100420611 - - - 20 - coiled-coil domain containing 84 pseudogene pseudo - - - - 20121230 -9606 100420612 LOC100420612 - - - 20 - endoplasmic reticulum protein 29 pseudogene pseudo - - - - 20121230 -9606 100420613 LOC100420613 - - - 4 - leucine rich repeat containing 34 pseudogene pseudo - - - - 20121230 -9606 100420615 LOC100420615 - - - 15 15q21.2 signal peptide peptidase like 2A pseudogene pseudo - - - - 20121230 -9606 100420617 LOC100420617 - - - 10 - FERM and PDZ domain containing 2 pseudogene pseudo - - - - 20121209 -9606 100420618 LOC100420618 - - - 10 - phospholipase D family, member 5 pseudogene pseudo - - - - 20121230 -9606 100420620 LOC100420620 - - - 3 - coiled-coil domain containing 90A pseudogene pseudo - - - - 20121230 -9606 100420621 MTAPP2 - - HGNC:42443 3 - methylthioadenosine phosphorylase pseudogene 2 pseudo MTAPP2 methylthioadenosine phosphorylase pseudogene 2 O - 20121230 -9606 100420627 LOC100420627 - - - 6 - glutathione S-transferase alpha 5 pseudogene pseudo - - - - 20121230 -9606 100420631 LOC100420631 - - - 6 - beta-transducin repeat containing pseudogene pseudo - - - - 20121230 -9606 100420633 PGAM1P10 - - HGNC:42457 6 - phosphoglycerate mutase 1 pseudogene 10 pseudo PGAM1P10 phosphoglycerate mutase 1 pseudogene 10 O - 20121230 -9606 100420638 LOC100420638 - - - 17 - chloride intracellular channel 1 pseudogene pseudo - - - - 20121230 -9606 100420641 LOC100420641 - - - 16 - TNF receptor-associated factor 7, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 100420642 LOC100420642 - - - 16 - Rho GTPase activating protein 20 pseudogene pseudo - - - - 20121230 -9606 100420644 LOC100420644 - - - 16 - cell division cycle associated 8 pseudogene pseudo - - - - 20121230 -9606 100420647 LOC100420647 - - - 7 - voltage-dependent anion channel 3 pseudogene pseudo - - - - 20121230 -9606 100420648 LOC100420648 - - - 7 - Der1-like domain family, member 2 pseudogene pseudo - - - - 20121230 -9606 100420650 PGAM1P7 - - HGNC:42454 X - phosphoglycerate mutase 1 pseudogene 7 pseudo PGAM1P7 phosphoglycerate mutase 1 pseudogene 7 O - 20121230 -9606 100420653 LOC100420653 - - - X - guanosine monophosphate reductase pseudogene pseudo - - - - 20121230 -9606 100420656 QTRT1P1 - - HGNC:39179 X - queuine tRNA-ribosyltransferase 1 pseudogene 1 pseudo QTRT1P1 queuine tRNA-ribosyltransferase 1 pseudogene 1 O - 20121230 -9606 100420658 LOC100420658 - - - 1 - post-GPI attachment to proteins 2 pseudogene pseudo - - - - 20121230 -9606 100420660 PGAM1P11 - - HGNC:42464 1 - phosphoglycerate mutase 1 pseudogene 11 pseudo PGAM1P11 phosphoglycerate mutase 1 pseudogene 11 O - 20121230 -9606 100420665 RPEP4 - - HGNC:44523 22 - ribulose-5-phosphate-3-epimerase pseudogene 4 pseudo RPEP4 ribulose-5-phosphate-3-epimerase pseudogene 4 O - 20121230 -9606 100420666 LOC100420666 - - - 2 - lysine (K)-specific demethylase 3A pseudogene pseudo - - - - 20121230 -9606 100420667 LOC100420667 - - - 2 - solute carrier family 19, member 3 pseudogene pseudo - - - - 20121230 -9606 100420668 LOC100420668 - - - 2 - chromosome 2 open reading frame 16 pseudogene pseudo - - - - 20121230 -9606 100420669 LOC100420669 - - - 2 - solute carrier family 44, member 3 pseudogene pseudo - - - - 20121230 -9606 100420670 LOC100420670 - - - 9 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420671 LOC100420671 - - - 9 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420673 LOC100420673 - - - 12 - RAB5A, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100420678 LOC100420678 - - - 12 - coiled-coil domain containing 150 pseudogene pseudo - - - - 20121230 -9606 100420679 LOC100420679 - - - 11 - signal recognition particle 19kDa pseudogene pseudo - - - - 20121230 -9606 100420680 LOC100420680 - - - 11 - coiled-coil domain containing 90B pseudogene pseudo - - - - 20121230 -9606 100420681 PGAM1P9 - - HGNC:42456 11 - phosphoglycerate mutase 1 pseudogene 9 pseudo PGAM1P9 phosphoglycerate mutase 1 pseudogene 9 O - 20121230 -9606 100420683 LOC100420683 - - - 5 - chromosome X open reading frame 67 pseudogene pseudo - - - - 20121230 -9606 100420689 CASC4P1 - - HGNC:39251 13 - cancer susceptibility candidate 4 pseudogene 1 pseudo CASC4P1 cancer susceptibility candidate 4 pseudogene 1 O - 20121230 -9606 100420693 LOC100420693 - - - 4 - solute carrier family 47, member 2 pseudogene pseudo - - - - 20121230 -9606 100420694 LOC100420694 - - - 4 - transmembrane protease, serine 11B pseudogene pseudo - - - - 20121230 -9606 100420695 ABT1P1 - - HGNC:39557 4 - activator of basal transcription 1 pseudogene 1 pseudo ABT1P1 activator of basal transcription 1 pseudogene 1 O - 20121230 -9606 100420707 LOC100420707 - - - 15 - DDB1 and CUL4 associated factor 6 pseudogene pseudo - - - - 20121230 -9606 100420710 TPST2P1 - - HGNC:44425 15 - tyrosylprotein sulfotransferase 2 pseudogene 1 pseudo TPST2P1 tyrosylprotein sulfotransferase 2 pseudogene 1 O - 20121230 -9606 100420711 LOC100420711 - - - 15 - thioesterase superfamily member 4 pseudogene pseudo - - - - 20121230 -9606 100420734 LOC100420734 - - - 10 - RAB5C, member RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100420737 LOC100420737 - - - 10 - neurofilament, medium polypeptide pseudogene pseudo - - - - 20121230 -9606 100420738 LOC100420738 - - - 3 - chromosome 9 open reading frame 78 pseudogene pseudo - - - - 20121230 -9606 100420741 LOC100420741 - - - 6 - adenosylmethionine decarboxylase 1 pseudogene pseudo - - - - 20121230 -9606 100420742 LOC100420742 - - - 6 - tetratricopeptide repeat domain 22 pseudogene pseudo - - - - 20121230 -9606 100420743 LOC100420743 - - - 6 - chromosome 6 open reading frame 58 pseudogene pseudo - - - - 20121230 -9606 100420746 LOC100420746 hCG_1644355 - - 8 8q23.3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 pseudogene pseudo - - - - 20121230 -9606 100420748 LOC100420748 - - - 8 - suppressor of cytokine signaling 5 pseudogene pseudo - - - - 20121230 -9606 100420752 SRP72P1 - - HGNC:31095 18 18q21.1 signal recognition particle 72kDa pseudogene 1 pseudo SRP72P1 signal recognition particle 72kDa pseudogene 1 O - 20121230 -9606 100420754 SOCS5P1 - - HGNC:44597 7 - suppressor of cytokine signaling 5 pseudogene 1 pseudo SOCS5P1 suppressor of cytokine signaling 5 pseudogene 1 O - 20121230 -9606 100420758 LOC100420758 - - - X - poly(A) binding protein, nuclear 1 pseudogene pseudo - - - - 20121230 -9606 100420759 LOC100420759 - - - X - suppressor of cytokine signaling 6 pseudogene pseudo - - - - 20121230 -9606 100420760 LOC100420760 - - - X - coronin, actin binding protein, 1C pseudogene pseudo - - - - 20121230 -9606 100420763 LOC100420763 - - - 14 - cytoskeleton associated protein 2 pseudogene pseudo - - - - 20121230 -9606 100420765 LOC100420765 - - - 14 - leucine-rich pentatricopeptide repeat containing pseudogene pseudo - - - - 20121230 -9606 100420769 LOC100420769 - - - 22 - glutathione S-transferase theta 1 pseudogene pseudo - - - - 20121230 -9606 100420770 LOC100420770 - - - 2 - chromosome 12 open reading frame 10 pseudogene pseudo - - - - 20121230 -9606 100420772 LOC100420772 - - - 2 - coordinator of PRMT5, differentiation stimulator pseudogene pseudo - - - - 20121230 -9606 100420774 LOC100420774 - - - 2 - zinc finger, DHHC-type containing 6 pseudogene pseudo - - - - 20121230 -9606 100420775 LOC100420775 - - - 2 - 5'-nucleotidase domain containing 2 pseudogene pseudo - - - - 20121230 -9606 100420776 LOC100420776 - - - 9 - contactin associated protein-like 3 pseudogene pseudo - - - - 20121230 -9606 100420777 LOC100420777 - - - 9 - contactin associated protein-like 3 pseudogene pseudo - - - - 20121230 -9606 100420778 LOC100420778 - - - 9 - chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121230 -9606 100420779 LOC100420779 - - - 9 - chromosome 16 open reading frame 70 pseudogene pseudo - - - - 20121230 -9606 100420784 LOC100420784 - - - 9 - chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121209 -9606 100420785 LOC100420785 - - - 9 - contactin associated protein-like 3 pseudogene pseudo - - - - 20121230 -9606 100420786 LOC100420786 - - - 9 - contactin associated protein-like 3 pseudogene pseudo - - - - 20121209 -9606 100420787 LOC100420787 - - - 9 - contactin associated protein-like 3 pseudogene pseudo - - - - 20121209 -9606 100420788 LOC100420788 - - - 9 - chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121230 -9606 100420789 LOC100420789 - - - 9 - chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121230 -9606 100420790 LOC100420790 - - - 9 - glucosamine-6-phosphate deaminase 2 pseudogene pseudo - - - - 20121230 -9606 100420792 LOC100420792 - - - 12 - Nedd4 family interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 100420794 LOC100420794 - - - 12 - RE1-silencing transcription factor pseudogene pseudo - - - - 20121230 -9606 100420797 LOC100420797 - - - 19 - Fc fragment of IgG binding protein pseudogene pseudo - - - - 20121230 -9606 100420798 LOC100420798 - - - 19 - poly(A) binding protein, nuclear 1 pseudogene pseudo - - - - 20121230 -9606 100420800 LOC100420800 - - - 11 - suppressor of cytokine signaling 6 pseudogene pseudo - - - - 20121230 -9606 100420801 LOC100420801 - - - 11 - lysine (K)-specific demethylase 4D pseudogene pseudo - - - - 20121230 -9606 100420802 LOC100420802 - - - 11 - lysine (K)-specific demethylase 4D pseudogene pseudo - - - - 20121230 -9606 100420803 LOC100420803 - - - 11 - lysine (K)-specific demethylase 4D pseudogene pseudo - - - - 20121230 -9606 100420804 LOC100420804 - - - 5 - zinc finger CCCH-type containing 14 pseudogene pseudo - - - - 20121230 -9606 100420811 C2orf27AP1 - - HGNC:38413 Y - chromosome 2 open reading frame 27A pseudogene 1 pseudo C2orf27AP1 chromosome 2 open reading frame 27A pseudogene 1 O - 20121230 -9606 100420818 LOC100420818 - - - 4 - family with sequence similarity 176, member C pseudogene pseudo - - - - 20121230 -9606 100420821 LOC100420821 - - - 4 - family with sequence similarity 176, member C pseudogene pseudo - - - - 20121230 -9606 100420823 LOC100420823 - - - 15 - family with sequence similarity 208, member A pseudogene pseudo - - - - 20121230 -9606 100420827 LOC100420827 - - - 10 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420828 LOC100420828 - - - 10 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420829 LOC100420829 - - - 10 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420830 LOC100420830 - - - 10 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100420831 LOC100420831 - - - 3 - chromosome 1 open reading frame 106 pseudogene pseudo - - - - 20121230 -9606 100420832 LOC100420832 - - - 3 - cysteine and glycine-rich protein 2 pseudogene pseudo - - - - 20121230 -9606 100420833 FGFR3P4 - - HGNC:37949 3 - fibroblast growth factor receptor 3 pseudogene 4 pseudo FGFR3P4 fibroblast growth factor receptor 3 pseudogene 4 O - 20121230 -9606 100420834 SRRM1P2 - - HGNC:38163 3 - serine/arginine repetitive matrix 1 pseudogene 2 pseudo SRRM1P2 serine/arginine repetitive matrix 1 pseudogene 2 O - 20121230 -9606 100420839 LOC100420839 - - - 6 - chromosome 18 open reading frame 21 pseudogene pseudo - - - - 20121230 -9606 100420841 LOC100420841 - - - 6 - katanin p80 subunit B-like 1 pseudogene pseudo - - - - 20121230 -9606 100420843 LOC100420843 - - - 6 - chromosome 16 open reading frame 88 pseudogene pseudo - - - - 20121230 -9606 100420845 LOC100420845 - - - 8 - solute carrier family 25, member 43 pseudogene pseudo - - - - 20121230 -9606 100420848 LOC100420848 - - - 17 - Myb/SANT-like DNA-binding domain containing 3 pseudogene pseudo - - - - 20121230 -9606 100420850 LOC100420850 - - - 17 - leucine rich repeat containing 37B pseudogene pseudo - - - - 20121209 -9606 100420851 LOC100420851 - - - 17 - nitric oxide synthase 2, inducible pseudogene pseudo - - - - 20121230 -9606 100420852 LOC100420852 - - - 17 - nitric oxide synthase 2, inducible pseudogene pseudo - - - - 20121230 -9606 100420853 LOC100420853 - - - 17 - nitric oxide synthase 2, inducible pseudogene pseudo - - - - 20121230 -9606 100420854 LOC100420854 - - - 17 - speedy homolog E1 (Xenopus laevis) pseudogene pseudo - - - - 20121230 -9606 100420859 LOC100420859 - - - 16 - chromosome 2 open reading frame 69 pseudogene pseudo - - - - 20121230 -9606 100420863 LOC100420863 - - - 7 - family with sequence similarity 176, member C pseudogene pseudo - - - - 20121230 -9606 100420864 LOC100420864 - - - 7 - chromosome 11 open reading frame 58 pseudogene pseudo - - - - 20121230 -9606 100420869 LOC100420869 - - - X - acetyl-CoA acyltransferase 2 pseudogene pseudo - - - - 20121230 -9606 100420872 LOC100420872 - - - X - ribosome binding factor A (putative) pseudogene pseudo - - - - 20121230 -9606 100420875 FAM204BP - - HGNC:42011 1 - family with sequence similarity 204, member B, pseudogene pseudo FAM204BP family with sequence similarity 204, member B, pseudogene O - 20121230 -9606 100420877 SLC25A39P1 - - HGNC:43859 1 - solute carrier family 25, member 39 pseudogene 1 pseudo SLC25A39P1 solute carrier family 25, member 39 pseudogene 1 O - 20121230 -9606 100420878 LOC100420878 - - - 1 - GABA(A) receptor-associated protein pseudogene pseudo - - - - 20121230 -9606 100420879 LOC100420879 - - - 1 - chromosome 2 open reading frame 27B pseudogene pseudo - - - - 20121230 -9606 100420880 LOC100420880 - - - 1 - primase, DNA, polypeptide 1 (49kDa) pseudogene pseudo - - - - 20121230 -9606 100420881 FGFR3P6 - - HGNC:37951 1 - fibroblast growth factor receptor 3 pseudogene 6 pseudo FGFR3P6 fibroblast growth factor receptor 3 pseudogene 6 O - 20121230 -9606 100420885 LOC100420885 - - - 22 - suppressor of cytokine signaling 2 pseudogene pseudo - - - - 20121230 -9606 100420886 RNFT1P1 - - HGNC:44387 2 - ring finger protein, transmembrane 1 pseudogene 1 pseudo RNFT1P1 ring finger protein, transmembrane 1 pseudogene 1 O - 20121230 -9606 100420887 LOC100420887 - - - 2 - UPF0607 protein ENSP00000381418-like pseudogene pseudo - - - - 20121230 -9606 100420888 LOC100420888 - - - 2 - torsin family 1, member B (torsin B) pseudogene pseudo - - - - 20121230 -9606 100420889 LOC100420889 - - - 2 - anaphase promoting complex subunit 1 pseudogene pseudo - - - - 20121230 -9606 100420890 LOC100420890 - - - 2 - anaphase promoting complex subunit 1 pseudogene pseudo - - - - 20121230 -9606 100420892 LOC100420892 - - - 2 - chromosome 14 open reading frame 166 pseudogene pseudo - - - - 20121230 -9606 100420893 LOC100420893 - - - 2 - Down syndrome critical region gene 3 pseudogene pseudo - - - - 20121230 -9606 100420895 LOC100420895 - - - 2 - fibrous sheath-interacting protein 2 pseudogene pseudo - - - - 20121230 -9606 100420896 LOC100420896 - - - 9 - UPF0607 protein ENSP00000381418-like pseudogene pseudo - - - - 20121230 -9606 100420897 LOC100420897 - - - 12 - aminolevulinate, delta-, synthase 1 pseudogene pseudo - - - - 20121230 -9606 100420898 LOC100420898 - - - 12 - chromosome 16 open reading frame 88 pseudogene pseudo - - - - 20121230 -9606 100420899 LOC100420899 - - - 12 - mitochondrial ribosomal protein S25 pseudogene pseudo - - - - 20121230 -9606 100420900 LOC100420900 - - - 12 - family with sequence similarity 213, member A pseudogene pseudo - - - - 20121230 -9606 100420901 HAUS8P1 - - HGNC:43766 12 - HAUS augmin-like complex, subunit 8 pseudogene 1 pseudo HAUS8P1 HAUS augmin-like complex, subunit 8 pseudogene 1 O - 20121230 -9606 100420902 LOC100420902 - - - 19 - exocyst complex component 3-like 4 pseudogene pseudo - - - - 20121230 -9606 100420904 LOC100420904 - - - 19 - SIGLEC family like 1 pseudogene pseudo - - - - 20121230 -9606 100420907 LOC100420907 - - - 11 - family with sequence similarity 176, member C pseudogene pseudo - - - - 20121230 -9606 100420909 LOC100420909 - - - 5 - transmembrane protein 251 pseudogene pseudo - - - - 20121230 -9606 100420910 LOC100420910 - - - 5 - protein arginine methyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100420911 LOC100420911 - - - 5 - chromosome 14 open reading frame 166 pseudogene pseudo - - - - 20121230 -9606 100420916 FAM204CP - - HGNC:42012 13 - family with sequence similarity 204, member C, pseudogene pseudo FAM204CP family with sequence similarity 204, member C, pseudogene O - 20121230 -9606 100420919 LOC100420919 - - - 13 - katanin p80 subunit B-like 1 pseudogene pseudo - - - - 20121230 -9606 100420920 ZDHHC4P1 - - HGNC:39443 13 - zinc finger, DHHC-type containing 4 pseudogene 1 pseudo ZDHHC4P1 zinc finger, DHHC-type containing 4 pseudogene 1 O - 20121230 -9606 100420921 AMMECR1LP1 - - HGNC:39809 13 - AMMECR1-like pseudogene 1 pseudo AMMECR1LP1 AMMECR1-like pseudogene 1 O - 20121230 -9606 100420924 RNF6P1 - - HGNC:39922 21 - ring finger protein (C3H2C3 type) 6 pseudogene 1 pseudo RNF6P1 ring finger protein (C3H2C3 type) 6 pseudogene 1 O - 20121230 -9606 100420925 LOC100420925 - - - 21 - chromosome 2 open reading frame 27A pseudogene pseudo - - - - 20121230 -9606 100420926 ZEB2P1 - ZEB1P1 HGNC:33346 4 4p15.32 zinc finger E-box binding homeobox 2 pseudogene 1 pseudo ZEB2P1 zinc finger E-box binding homeobox 2 pseudogene 1 O - 20121230 -9606 100420927 LOC100420927 - - - 4 - protein arginine methyltransferase 5 pseudogene pseudo - - - - 20121230 -9606 100420928 LOC100420928 - - - 15 - chromosome 15 open reading frame 43 pseudogene pseudo - - - - 20121230 -9606 100420929 LOC100420929 - - - 15 - ribosome binding factor A (putative) pseudogene pseudo - - - - 20121230 -9606 100420930 LOC100420930 - - - 15 - SWI5 recombination repair homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100420939 LOC100420939 - - - 3 - nucleosome assembly protein 1-like 5 pseudogene pseudo - - - - 20121230 -9606 100420940 LOC100420940 - - - 6 - transcription elongation regulator 1 pseudogene pseudo - - - - 20121230 -9606 100420941 LOC100420941 - - - 6 - butyrophilin, subfamily 1, member A1 pseudogene pseudo - - - - 20121230 -9606 100420944 LOC100420944 - - - 8 - nuclear transcription factor Y, beta pseudogene pseudo - - - - 20121230 -9606 100420946 LOC100420946 - - - 18 - katanin p80 subunit B-like 1 pseudogene pseudo - - - - 20121230 -9606 100420948 LOC100420948 - - - 18 - ADP-ribosylation factor-like 14 effector protein pseudogene pseudo - - - - 20121230 -9606 100420949 LOC100420949 - - - 18 - neuroepithelial cell transforming 1 pseudogene pseudo - - - - 20121230 -9606 100420950 MRPL37P1 - HsT4307 HGNC:31003 18 18q21.31 mitochondrial ribosomal protein L37 pseudogene 1 pseudo MRPL37P1 mitochondrial ribosomal protein L37 pseudogene 1 O - 20121230 -9606 100420951 LOC100420951 - - - 16 - mitochondrial ribosomal protein L18 pseudogene pseudo - - - - 20121230 -9606 100420952 FGFR3P5 - - HGNC:37950 16 - fibroblast growth factor receptor 3 pseudogene 5 pseudo FGFR3P5 fibroblast growth factor receptor 3 pseudogene 5 O - 20121230 -9606 100420954 LOC100420954 - - - 7 - GrpE-like 1, mitochondrial (E. coli) pseudogene pseudo - - - - 20121230 -9606 100420955 LOC100420955 - - - X - scavenger receptor class B, member 1 pseudogene pseudo - - - - 20121230 -9606 100420957 LOC100420957 - - - X - transcription elongation regulator 1 pseudogene pseudo - - - - 20121230 -9606 100420958 LOC100420958 - - - X - transmembrane 9 superfamily member 2 pseudogene pseudo - - - - 20121230 -9606 100420963 FAM204DP - - HGNC:42013 14 - family with sequence similarity 204, member D, pseudogene pseudo FAM204DP family with sequence similarity 204, member D, pseudogene O - 20121230 -9606 100420966 LOC100420966 - - - 14 - chromosome 17 open reading frame 98 pseudogene pseudo - - - - 20121230 -9606 100420967 LOC100420967 - - - 22 - chromosome 2 open reading frame 27B pseudogene pseudo - - - - 20121230 -9606 100420968 LOC100420968 - - - 2 - Ly1 antibody reactive homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100420972 ZFYVE9P2 - - HGNC:39046 2 - zinc finger, FYVE domain containing 9 pseudogene 2 pseudo ZFYVE9P2 zinc finger, FYVE domain containing 9 pseudogene 2 O - 20121230 -9606 100420975 GMCL1P2 - - HGNC:42863 2 - germ cell-less, spermatogenesis associated 1 pseudogene 2 pseudo GMCL1P2 germ cell-less, spermatogenesis associated 1 pseudogene 2 O - 20121230 -9606 100420981 LOC100420981 - - - 12 - nucleosome assembly protein 1-like 1 pseudogene pseudo - - - - 20121230 -9606 100420982 LOC100420982 - - - 12 - retinol dehydrogenase 16 (all-trans) pseudogene pseudo - - - - 20121230 -9606 100420983 LOC100420983 - - - 12 - chromosome 10 open reading frame 129 pseudogene pseudo - - - - 20121230 -9606 100420990 LOC100420990 - - - 5 - aurora kinase A interacting protein 1 pseudogene pseudo - - - - 20121230 -9606 100421002 HAVCR1P2 - - HGNC:44035 4 - hepatitis A virus cellular receptor 1 pseudogene 2 pseudo HAVCR1P2 hepatitis A virus cellular receptor 1 pseudogene 2 O - 20121230 -9606 100421006 LOC100421006 - - - 4 - very low density lipoprotein receptor pseudogene pseudo - - - - 20121230 -9606 100421008 SLC9B1P3 - - HGNC:43582 10 - solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 3 pseudo SLC9B1P3 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 3 O - 20121230 -9606 100421009 LOC100421009 - - - 10 - UPF0607 protein ENSP00000381418-like pseudogene pseudo - - - - 20121230 -9606 100421010 LOC100421010 - - - 10 - UPF0607 protein ENSP00000381418-like pseudogene pseudo - - - - 20121230 -9606 100421012 LOC100421012 - - - 3 - tigger transposable element derived 2 pseudogene pseudo - - - - 20120720 -9606 100421018 AMZ2P2 - - HGNC:38072 6 - archaelysin family metallopeptidase 2 pseudogene 2 pseudo AMZ2P2 archaelysin family metallopeptidase 2 pseudogene 2 O - 20121230 -9606 100421022 LOC100421022 - - - 6 - tigger transposable element derived 6 pseudogene pseudo - - - - 20121230 -9606 100421023 LOC100421023 - - - 8 - nuclear transcription factor Y, gamma pseudogene pseudo - - - - 20121230 -9606 100421028 LOC100421028 - - - 17 - gap junction protein, alpha 4, 37kDa pseudogene pseudo - - - - 20121230 -9606 100421029 LOC100421029 - - - 16 - transcription elongation regulator 1 pseudogene pseudo - - - - 20121230 -9606 100421031 LOC100421031 - - - 16 - carbonic anhydrase VA, mitochondrial pseudogene pseudo - - - - 20121230 -9606 100421039 LOC100421039 - - - X - NLR family, pyrin domain containing 7 pseudogene pseudo - - - - 20121230 -9606 100421043 LOC100421043 - - - X - tigger transposable element derived 7 pseudogene pseudo - - - - 20121230 -9606 100421045 BCAS2P2 - - HGNC:39595 1 - breast carcinoma amplified sequence 2 pseudogene 2 pseudo BCAS2P2 breast carcinoma amplified sequence 2 pseudogene 2 O - 20121230 -9606 100421046 LOC100421046 - - - 1 - superoxide dismutase 2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 100421047 RBMX2P3 - - HGNC:39925 1 - RNA binding motif protein, X-linked 2 pseudogene 3 pseudo RBMX2P3 RNA binding motif protein, X-linked 2 pseudogene 3 O - 20121230 -9606 100421053 DSCR6P1 - - HGNC:23340 14 - DSCR6 pseudogene 1 pseudo DSCR6P1 DSCR6 pseudogene 1 O - 20121230 -9606 100421055 ZMYND19P1 - - HGNC:44540 14 - zinc finger, MYND-type containing 19 pseudogene 1 pseudo ZMYND19P1 zinc finger, MYND-type containing 19 pseudogene 1 O - 20121230 -9606 100421057 GSTM3P2 - - HGNC:38006 2 - glutathione S-transferase mu 3 pseudogene 2 pseudo GSTM3P2 glutathione S-transferase mu 3 pseudogene 2 O - 20121230 -9606 100421058 PABPC1P11 - - HGNC:37993 9 - poly(A) binding protein, cytoplasmic 1 pseudogene 11 pseudo PABPC1P11 poly(A) binding protein, cytoplasmic 1 pseudogene 11 O - 20121230 -9606 100421061 LOC100421061 - - - 12 - hepatitis A virus cellular receptor 1 pseudogene pseudo - - - - 20121230 -9606 100421064 LOC100421064 - - - 19 - sushi, nidogen and EGF-like domains 1 pseudogene pseudo - - - - 20121230 -9606 100421071 LOC100421071 - - - 5 - zinc finger, CCHC domain containing 10 pseudogene pseudo - - - - 20121230 -9606 100421072 COQ10BP2 - - HGNC:44913 5 - coenzyme Q10 homolog B pseudogene 2 pseudo COQ10BP2 coenzyme Q10 homolog B pseudogene 2 O - 20121230 -9606 100421074 LOC100421074 - - - 5 - ZFP14 zinc finger protein pseudogene pseudo - - - - 20121230 -9606 100421075 RCC2P2 - - HGNC:38419 Y - regulator of chromosome condensation 2 pseudogene 2 pseudo RCC2P2 regulator of chromosome condensation 2 pseudogene 2 O - 20121230 -9606 100421087 LOC100421087 - - - 15 - zinc finger, CCHC domain containing 9 pseudogene pseudo - - - - 20121230 -9606 100421090 RCC2P4 - - HGNC:42380 3 - regulator of chromosome condensation 2 pseudogene 4 pseudo RCC2P4 regulator of chromosome condensation 2 pseudogene 4 O - 20121230 -9606 100421091 LOC100421091 - - - 6 - LSM14A, SCD6 homolog A (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421092 LOC100421092 - - - 6 - esterase D/formylglutathione hydrolase pseudogene pseudo - - - - 20121230 -9606 100421093 LOC100421093 - - - 6 - karyopherin alpha 3 (importin alpha 4) pseudogene pseudo - - - - 20121230 -9606 100421094 LOC100421094 - - - 8 - ubiquitin specific peptidase 17-like family member 2 pseudogene pseudo - - - - 20121230 -9606 100421096 LOC100421096 - - - 8 - non-SMC condensin I complex, subunit G pseudogene pseudo - - - - 20121230 -9606 100421097 ALG1L12P - - HGNC:44381 8 - asparagine-linked glycosylation 1-like 12, pseudogene pseudo ALG1L12P asparagine-linked glycosylation 1-like 12, pseudogene O - 20121230 -9606 100421100 LOC100421100 - - - 17 - RNA terminal phosphate cyclase-like 1 pseudogene pseudo - - - - 20121230 -9606 100421108 LOC100421108 - - - X - inositol 1,3,4-triphosphate 5/6 kinase pseudogene pseudo - - - - 20121230 -9606 100421109 LOC100421109 - - - X - karyopherin alpha 4 (importin alpha 3) pseudogene pseudo - - - - 20121230 -9606 100421110 LOC100421110 - - - X - VENT homeobox pseudogene pseudo - - - - 20121230 -9606 100421113 CROCCP4 - - HGNC:43864 1 - ciliary rootlet coiled-coil, rootletin pseudogene 4 pseudo CROCCP4 ciliary rootlet coiled-coil, rootletin pseudogene 4 O - 20121230 -9606 100421114 CROCCP5 - - HGNC:43865 1 - ciliary rootlet coiled-coil, rootletin pseudogene 5 pseudo CROCCP5 ciliary rootlet coiled-coil, rootletin pseudogene 5 O - 20121230 -9606 100421116 LOC100421116 - - - 1 - trafficking protein, kinesin binding 2 pseudogene pseudo - - - - 20121230 -9606 100421121 LOC100421121 - - - 22 - small G protein signaling modulator 1 pseudogene pseudo - - - - 20121230 -9606 100421122 LOC100421122 - - - 2 - zinc finger protein 106 homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100421123 PGBD4P5 - - HGNC:44070 2 - piggyBac transposable element derived 4 pseudogene 5 pseudo PGBD4P5 piggyBac transposable element derived 4 pseudogene 5 O - 20121230 -9606 100421125 LOC100421125 - - - 2 - structural maintenance of chromosomes 4 pseudogene pseudo - - - - 20121230 -9606 100421126 LOC100421126 - - - 12 - sucrase-isomaltase (alpha-glucosidase) pseudogene pseudo - - - - 20121230 -9606 100421129 IFNL3P1 - IL28BP1 HGNC:44483 19 - interferon, lambda 3 pseudogene 1 pseudo IFNL3P1 interferon, lambda 3 pseudogene 1 O - 20121230 -9606 100421130 LOC100421130 - - - 19 - LSM14A, SCD6 homolog A (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421131 RCC2P6 - - HGNC:42382 11 - regulator of chromosome condensation 2 pseudogene 6 pseudo RCC2P6 regulator of chromosome condensation 2 pseudogene 6 O - 20121230 -9606 100421133 PGAM5P1 - - HGNC:42467 5 - phosphoglycerate mutase family member 5 pseudogene 1 pseudo PGAM5P1 phosphoglycerate mutase family member 5 pseudogene 1 O - 20121230 -9606 100421136 PGBD4P3 - - HGNC:44068 5 - piggyBac transposable element derived 4 pseudogene 3 pseudo PGBD4P3 piggyBac transposable element derived 4 pseudogene 3 O - 20121230 -9606 100421137 DPPA2P1 - - HGNC:38448 Y - developmental pluripotency associated 2 pseudogene 1 pseudo DPPA2P1 developmental pluripotency associated 2 pseudogene 1 O - 20121230 -9606 100421141 LOC100421141 - - - 4 - developmental pluripotency associated 2 pseudogene pseudo - - - - 20121230 -9606 100421142 LOC100421142 - - - 4 - developmental pluripotency associated 2 pseudogene pseudo - - - - 20121230 -9606 100421143 ELL2P2 - - HGNC:39344 4 - elongation factor, RNA polymerase II, 2 pseudogene 2 pseudo ELL2P2 elongation factor, RNA polymerase II, 2 pseudogene 2 O - 20121230 -9606 100421146 PGBD4P4 - - HGNC:44076 4 - piggyBac transposable element derived 4 pseudogene 4 pseudo PGBD4P4 piggyBac transposable element derived 4 pseudogene 4 O - 20121230 -9606 100421148 LOC100421148 - - - 15 - non-SMC condensin I complex, subunit G pseudogene pseudo - - - - 20121230 -9606 100421150 COQ10BP1 - - HGNC:44912 10 - coenzyme Q10 homolog B pseudogene 1 pseudo COQ10BP1 coenzyme Q10 homolog B pseudogene 1 O - 20121230 -9606 100421153 DLEC1P1 - - HGNC:44545 3 - deleted in lung and esophageal cancer 1 pseudogene 1 pseudo DLEC1P1 deleted in lung and esophageal cancer 1 pseudogene 1 O - 20121230 -9606 100421154 LOC100421154 - - - 3 - developmental pluripotency associated 4 pseudogene pseudo - - - - 20121230 -9606 100421156 DPPA4P1 - - HGNC:44903 3 - developmental pluripotency associated 4 pseudogene 1 pseudo DPPA4P1 developmental pluripotency associated 4 pseudogene 1 O - 20121230 -9606 100421158 LOC100421158 - - - 6 - piggyBac transposable element derived 4 pseudogene pseudo - - - - 20121230 -9606 100421160 LOC100421160 - - - 8 - structural maintenance of chromosomes 5 pseudogene pseudo - - - - 20121230 -9606 100421161 LOC100421161 - - - 8 - ependymin related protein 1 (zebrafish) pseudogene pseudo - - - - 20121230 -9606 100421165 LOC100421165 - - - 17 - fermitin family member 3 pseudogene pseudo - - - - 20121230 -9606 100421166 LOC100421166 - - - 17 - SEC24 family, member A (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421167 SCML2P1 - - HGNC:44329 18 - sex comb on midleg-like 2 (Drosophila) pseudogene 1 pseudo SCML2P1 sex comb on midleg-like 2 (Drosophila) pseudogene 1 O - 20121230 -9606 100421169 LOC100421169 - - - 16 - thyroid hormone receptor interactor 11 pseudogene pseudo - - - - 20121230 -9606 100421171 LOC100421171 - - - 16 - thyroid hormone receptor interactor 11 pseudogene pseudo - - - - 20121230 -9606 100421172 SCML2P2 - - HGNC:44330 16 - sex comb on midleg-like 2 (Drosophila) pseudogene 2 pseudo SCML2P2 sex comb on midleg-like 2 (Drosophila) pseudogene 2 O - 20121230 -9606 100421173 LOC100421173 - - - 16 - thyroid hormone receptor interactor 11 pseudogene pseudo - - - - 20121230 -9606 100421174 LOC100421174 - - - 16 - thyroid hormone receptor interactor 13 pseudogene pseudo - - - - 20121230 -9606 100421175 NCAPD2P1 - - HGNC:43831 7 - non-SMC condensin I complex, subunit D2 pseudogene 1 pseudo NCAPD2P1 non-SMC condensin I complex, subunit D2 pseudogene 1 O - 20121230 -9606 100421177 TDGF1P1 - - HGNC:42350 X - teratocarcinoma-derived growth factor 1 pseudogene 1 pseudo TDGF1P1 teratocarcinoma-derived growth factor 1 pseudogene 1 O - 20121230 -9606 100421178 PGAM4P1 - - HGNC:42465 X - phosphoglycerate mutase family member 4 pseudogene 1 pseudo PGAM4P1 phosphoglycerate mutase family member 4 pseudogene 1 O - 20121230 -9606 100421179 LOC100421179 - - - X - component of oligomeric golgi complex 1 pseudogene pseudo - - - - 20121230 -9606 100421180 PGBD4P6 - - HGNC:44071 X - piggyBac transposable element derived 4 pseudogene 6 pseudo PGBD4P6 piggyBac transposable element derived 4 pseudogene 6 O - 20121230 -9606 100421182 PGBD4P7 - - HGNC:44074 1 - piggyBac transposable element derived 4 pseudogene 7 pseudo PGBD4P7 piggyBac transposable element derived 4 pseudogene 7 O - 20121230 -9606 100421184 LOC100421184 - - - 1 - zinc finger and BTB domain containing 2 pseudogene pseudo - - - - 20121230 -9606 100421185 PGBD4P8 - - HGNC:44075 1 - piggyBac transposable element derived 4 pseudogene 8 pseudo PGBD4P8 piggyBac transposable element derived 4 pseudogene 8 O - 20121230 -9606 100421188 GAPDHP57 - - HGNC:38563 2 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 pseudo GAPDHP57 glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 O - 20121230 -9606 100421189 GAPDHP49 - - HGNC:38555 2 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 49 pseudo GAPDHP49 glyceraldehyde 3 phosphate dehydrogenase pseudogene 49 O - 20121230 -9606 100421194 LOC100421194 - - - 9 - pyruvate dehydrogenase kinase, isozyme 1 pseudogene pseudo - - - - 20121230 -9606 100421197 LOC100421197 - - - 9 - zinc finger and BTB domain containing 10 pseudogene pseudo - - - - 20121230 -9606 100421198 LAMP1P1 - LAMP1L1 HGNC:6500 12 12p13.3 lysosomal-associated membrane protein 1 pseudogene 1 pseudo LAMP1P1 lysosomal-associated membrane protein 1 pseudogene 1 O - 20121230 -9606 100421201 LOC100421201 - - - 12 - piggyBac transposable element derived 3 pseudogene pseudo - - - - 20121230 -9606 100421202 LOC100421202 - - - 12 - C-type lectin domain family 1, member B pseudogene pseudo - - - - 20121230 -9606 100421204 LOC100421204 - - - 11 - cyclic nucleotide gated channel alpha 1 pseudogene pseudo - - - - 20121230 -9606 100421207 LOC100421207 - - - 11 - Fanconi anemia, complementation group L pseudogene pseudo - - - - 20121230 -9606 100421217 USP9YP5 - - HGNC:38418 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 5 pseudo USP9YP5 ubiquitin specific peptidase 9, Y-linked pseudogene 5 O - 20121209 -9606 100421219 USP9YP8 - - HGNC:38424 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 8 pseudo USP9YP8 ubiquitin specific peptidase 9, Y-linked pseudogene 8 O - 20121230 -9606 100421220 USP9YP9 - - HGNC:38435 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 9 pseudo USP9YP9 ubiquitin specific peptidase 9, Y-linked pseudogene 9 O - 20121209 -9606 100421222 USP9YP10 - - HGNC:38454 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 10 pseudo USP9YP10 ubiquitin specific peptidase 9, Y-linked pseudogene 10 O - 20121209 -9606 100421224 USP9YP11 - - HGNC:38460 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 11 pseudo USP9YP11 ubiquitin specific peptidase 9, Y-linked pseudogene 11 O - 20121209 -9606 100421226 RABEPKP1 - - HGNC:39791 13 - Rab9 effector protein with kelch motifs pseudogene 1 pseudo RABEPKP1 Rab9 effector protein with kelch motifs pseudogene 1 O - 20121230 -9606 100421228 PGBD4P2 - - HGNC:44077 20 - piggyBac transposable element derived 4 pseudogene 2 pseudo PGBD4P2 piggyBac transposable element derived 4 pseudogene 2 O - 20121230 -9606 100421232 GAPDHP56 - - HGNC:38562 4 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 56 pseudo GAPDHP56 glyceraldehyde 3 phosphate dehydrogenase pseudogene 56 O - 20121230 -9606 100421235 LOC100421235 - - - 15 - serine/arginine-rich splicing factor 9 pseudogene pseudo - - - - 20121230 -9606 100421236 GAPDHP50 - - HGNC:38556 3 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 50 pseudo GAPDHP50 glyceraldehyde 3 phosphate dehydrogenase pseudogene 50 O - 20121230 -9606 100421238 LOC100421238 - - - 3 - DEAD (Asp-Glu-Ala-Asp) box helicase 5 pseudogene pseudo - - - - 20121230 -9606 100421239 FANCD2P1 - - HGNC:44487 3 - Fanconi anemia, complementation group D2 pseudogene 1 pseudo FANCD2P1 Fanconi anemia, complementation group D2 pseudogene 1 O - 20121230 -9606 100421243 LOC100421243 - - - 6 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421244 LOC100421244 - - - 6 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421245 LOC100421245 - - - 6 - nuclear import 7 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421246 LOC100421246 - - - 6 - D4, zinc and double PHD fingers family 2 pseudogene pseudo - - - - 20121230 -9606 100421247 LOC100421247 - - - 6 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421248 LOC100421248 - - - 6 - siah E3 ubiquitin protein ligase family member 3 pseudogene pseudo - - - - 20121230 -9606 100421250 LOC100421250 - - - 6 - epithelial splicing regulatory protein 1 pseudogene pseudo - - - - 20121230 -9606 100421251 LOC100421251 - - - 6 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421253 LOC100421253 - - - 8 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421256 LOC100421256 - - - 8 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20121230 -9606 100421257 LOC100421257 - - - 18 - lysosomal-associated membrane protein 1 pseudogene pseudo - - - - 20121230 -9606 100421258 LOC100421258 - - - 16 - NOP58 ribonucleoprotein homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100421259 LOC100421259 - - - 16 - ZFP161 zinc finger protein pseudogene pseudo - - - - 20121230 -9606 100421261 LOC100421261 - - - 7 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421264 LOC100421264 - - - X - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421265 LOC100421265 - - - X - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421267 LOC100421267 - - - 1 - phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 100421269 LOC100421269 - - - 1 - phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 100421271 GAPDHP51 - - HGNC:38557 1 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 51 pseudo GAPDHP51 glyceraldehyde 3 phosphate dehydrogenase pseudogene 51 O - 20121230 -9606 100421273 LOC100421273 - - - 1 - F-box and WD repeat domain containing 11 pseudogene pseudo - - - - 20121230 -9606 100421279 LOC100421279 - - - 1 - phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121230 -9606 100421281 LOC100421281 - - - 1 - high density lipoprotein binding protein pseudogene pseudo - - - - 20121230 -9606 100421282 LOC100421282 - - - 1 - phosphodiesterase 4D interacting protein pseudogene pseudo - - - - 20121209 -9606 100421287 LOC100421287 - - - 2 - cAMP responsive element binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100421288 LOC100421288 - - - 2 - cAMP responsive element binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100421289 LOC100421289 - - - 2 - prolylcarboxypeptidase (angiotensinase C) pseudogene pseudo - - - - 20121230 -9606 100421292 LOC100421292 - - - 2 - cAMP responsive element binding protein 1 pseudogene pseudo - - - - 20121209 -9606 100421293 LOC100421293 - - - 9 - serine/arginine-rich splicing factor 10 pseudogene pseudo - - - - 20121230 -9606 100421294 LOC100421294 - - - 9 - phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo - - - - 20121230 -9606 100421295 PRPS1P2 - PRPS1L2 HGNC:9464 9 - phosphoribosyl pyrophosphate synthetase 1 pseudogene 2 pseudo PRPS1P2 phosphoribosyl pyrophosphate synthetase 1 pseudogene 2 O - 20121230 -9606 100421296 LOC100421296 - - - 12 - serine/arginine-rich splicing factor 11 pseudogene pseudo - - - - 20121230 -9606 100421300 LOC100421300 - - - 19 - pregnancy specific beta-1-glycoprotein 9 pseudogene pseudo - - - - 20121230 -9606 100421303 LOC100421303 - - - 11 - DEAH (Asp-Glu-Ala-His) box polypeptide 9 pseudogene pseudo - - - - 20121230 -9606 100421304 LOC100421304 - - - 11 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421306 LOC100421306 - - - 11 - RecQ protein-like (DNA helicase Q1-like) pseudogene pseudo - - - - 20121230 -9606 100421307 LOC100421307 - - - 5 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 pseudogene pseudo - - - - 20121230 -9606 100421308 LOC100421308 - - - 5 - phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo - - - - 20121230 -9606 100421309 LOC100421309 - - - 5 - DEAD (Asp-Glu-Ala-Asp) box helicase 25 pseudogene pseudo - - - - 20121230 -9606 100421311 LOC100421311 - - - 5 - BRCA1/BRCA2-containing complex, subunit 3 pseudogene pseudo - - - - 20121230 -9606 100421313 GAPDHP52 - - HGNC:38558 13 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 52 pseudo GAPDHP52 glyceraldehyde 3 phosphate dehydrogenase pseudogene 52 O - 20121230 -9606 100421314 LOC100421314 - - - 13 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421317 LOC100421317 - - - 20 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421318 GAPDHP53 - - HGNC:38559 20 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 53 pseudo GAPDHP53 glyceraldehyde 3 phosphate dehydrogenase pseudogene 53 O - 20121230 -9606 100421319 GAPDHP54 - - HGNC:38560 20 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 54 pseudo GAPDHP54 glyceraldehyde 3 phosphate dehydrogenase pseudogene 54 O - 20121230 -9606 100421321 LOC100421321 - - - 21 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421322 LOC100421322 - - - 21 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421323 HNRNPRP3 - - HGNC:44909 4 - heterogeneous nuclear ribonucleoprotein R pseudogene 3 pseudo HNRNPRP3 heterogeneous nuclear ribonucleoprotein R pseudogene 3 O - 20121230 -9606 100421324 GAPDHP55 - - HGNC:38561 15 - glyceraldehyde 3 phosphate dehydrogenase pseudogene 55 pseudo GAPDHP55 glyceraldehyde 3 phosphate dehydrogenase pseudogene 55 O - 20121230 -9606 100421328 LOC100421328 - - - 3 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 pseudogene pseudo - - - - 20121230 -9606 100421330 LOC100421330 - - - 6 - lysophosphatidylcholine acyltransferase 3 pseudogene pseudo - - - - 20121230 -9606 100421331 SAMD11P1 - - HGNC:44473 17 - sterile alpha motif domain containing 11 pseudogene 1 pseudo SAMD11P1 sterile alpha motif domain containing 11 pseudogene 1 O - 20121230 -9606 100421332 LOC100421332 - - - 17 - zinc finger with KRAB and SCAN domains 1 pseudogene pseudo - - - - 20121230 -9606 100421335 LOC100421335 - - - 18 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20120318 -9606 100421336 LOC100421336 - - - 7 - RAB3A interacting protein (rabin3)-like 1 pseudogene pseudo - - - - 20121230 -9606 100421338 CNOT7P1 - - HGNC:44248 X - CCR4-NOT transcription complex, subunit 7 pseudogene 1 pseudo CNOT7P1 CCR4-NOT transcription complex, subunit 7 pseudogene 1 O - 20121230 -9606 100421340 FNDC3CP - - HGNC:35452 X - fibronectin type III domain containing 3C, pseudogene pseudo FNDC3CP fibronectin type III domain containing 3C, pseudogene O - 20121230 -9606 100421341 UBE2V2P3 - - HGNC:44891 1 - ubiquitin-conjugating enzyme E2 variant 2 pseudgene 3 pseudo UBE2V2P3 ubiquitin-conjugating enzyme E2 variant 2 pseudgene 3 O - 20121230 -9606 100421343 LOC100421343 - - - 1 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B pseudogene pseudo - - - - 20121230 -9606 100421344 LOC100421344 - - - 1 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 pseudogene pseudo - - - - 20121230 -9606 100421347 LOC100421347 - - - 2 - golgi reassembly stacking protein 2, 55kDa pseudogene pseudo - - - - 20121230 -9606 100421349 LOC100421349 - - - 2 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421350 TCEA1P4 - - HGNC:31091 9 9p21.1 transcription elongation factor A (SII), 1 pseudogene 4 pseudo TCEA1P4 transcription elongation factor A (SII), 1 pseudogene 4 O - 20121230 -9606 100421351 HNRNPA1P14 - - HGNC:39132 9 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 14 pseudo HNRNPA1P14 heterogeneous nuclear ribonucleoprotein A1 pseudogene 14 O - 20121230 -9606 100421353 HNRNPA1P15 - - HGNC:39133 9 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 15 pseudo HNRNPA1P15 heterogeneous nuclear ribonucleoprotein A1 pseudogene 15 O - 20121230 -9606 100421354 HNRNPRP2 - - HGNC:44908 11 - heterogeneous nuclear ribonucleoprotein R pseudogene 2 pseudo HNRNPRP2 heterogeneous nuclear ribonucleoprotein R pseudogene 2 O - 20121230 -9606 100421357 LOC100421357 - - - 5 - heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 100421358 LOC100421358 - - - 5 - CREB regulated transcription coactivator 2 pseudogene pseudo - - - - 20121230 -9606 100421361 LOC100421361 - - - 20 - isopentenyl-diphosphate delta isomerase 1 pseudogene pseudo - - - - 20121230 -9606 100421362 LOC100421362 - - - 20 - hydroxysteroid (17-beta) dehydrogenase 12 pseudogene pseudo - - - - 20121230 -9606 100421363 ANKRD20A17P - - HGNC:43608 4 - ankyrin repeat domain 20 family, member A17, pseudogene pseudo ANKRD20A17P ankyrin repeat domain 20 family, member A17, pseudogene O - 20121230 -9606 100421364 LOC100421364 - - - 4 - fibroblast growth factor binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100421368 LOC100421368 - - - 15 - zinc finger and SCAN domain containing 5A pseudogene pseudo - - - - 20121230 -9606 100421369 DDX20P1 - - HGNC:44673 10 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 pseudogene 1 pseudo DDX20P1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 pseudogene 1 O - 20121230 -9606 100421371 DDX10P1 - - HGNC:44960 10 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 pseudogene 1 pseudo DDX10P1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 pseudogene 1 O - 20121230 -9606 100421372 LOC100421372 - - - 10 - zinc finger and SCAN domain containing 29 pseudogene pseudo - - - - 20121230 -9606 100421374 MPRIPP1 - - HGNC:44594 3 - myosin phosphatase Rho interacting protein pseudogene 1 pseudo MPRIPP1 myosin phosphatase Rho interacting protein pseudogene 1 O - 20121230 -9606 100421376 HNRNPA1P17 - - HGNC:39135 3 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 17 pseudo HNRNPA1P17 heterogeneous nuclear ribonucleoprotein A1 pseudogene 17 O - 20121230 -9606 100421378 LOC100421378 - - - 3 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421379 LOC100421379 - - - 6 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421384 LOC100421384 - - - 8 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421385 LOC100421385 - - - 18 - testis derived transcript (3 LIM domains) pseudogene pseudo - - - - 20121230 -9606 100421386 LOC100421386 - - - 7 - glutamyl aminopeptidase (aminopeptidase A) pseudogene pseudo - - - - 20121230 -9606 100421387 LOC100421387 - - - 7 - heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 100421389 HNRNPA1P9 - - HGNC:39127 7 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 9 pseudo HNRNPA1P9 heterogeneous nuclear ribonucleoprotein A1 pseudogene 9 O - 20121230 -9606 100421390 LOC100421390 - - - X - eukaryotic translation initiation factor 5 pseudogene pseudo - - - - 20121230 -9606 100421391 LOC100421391 - - - X - eukaryotic translation initiation factor 5 pseudogene pseudo - - - - 20121230 -9606 100421395 LOC100421395 - - - 1 - heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 100421397 LOC100421397 - - - 1 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421398 LOC100421398 - - - 1 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421399 LOC100421399 - - - 1 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421400 LOC100421400 - - - 1 - alanyl-tRNA synthetase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100421401 LOC100421401 - - - 1 - guanylate binding protein family, member 6 pseudogene pseudo - - - - 20121230 -9606 100421402 LOC100421402 - - - 1 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421404 LOC100421404 - - - 2 - retinitis pigmentosa 9 (autosomal dominant) pseudogene pseudo - - - - 20121230 -9606 100421409 LOC100421409 - - - 2 - glucosamine-phosphate N-acetyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100421411 LOC100421411 - - - 9 - DnaJ (Hsp40) homolog, subfamily B, member 5 pseudogene pseudo - - - - 20121230 -9606 100421413 LOC100421413 - - - 12 - heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 100421414 LOC100421414 - - - 19 - glial cells missing homolog 1 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100421415 LOC100421415 - - - 11 - heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 100421417 LOC100421417 - - - 11 - ATPase, H+/K+ exchanging, beta polypeptide pseudogene pseudo - - - - 20121230 -9606 100421419 LOC100421419 - - - 5 - protein phosphatase 4, regulatory subunit 2 pseudogene pseudo - - - - 20121230 -9606 100421420 LOC100421420 - - - 5 - tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 100421422 ANKRD20A10P - ANKRD20A4P1 HGNC:39707 13 - ankyrin repeat domain 20 family, member A10, pseudogene pseudo ANKRD20A10P ankyrin repeat domain 20 family, member A10, pseudogene O - 20121230 -9606 100421424 HNRNPA1P29 - - HGNC:39547 13 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 29 pseudo HNRNPA1P29 heterogeneous nuclear ribonucleoprotein A1 pseudogene 29 O - 20121230 -9606 100421425 LOC100421425 - - - 13 - calmodulin 2 (phosphorylase kinase, delta) pseudogene pseudo - - - - 20120318 -9606 100421427 ANKRD20A16P - - HGNC:43607 21 - ankyrin repeat domain 20 family, member A16, pseudogene pseudo ANKRD20A16P ankyrin repeat domain 20 family, member A16, pseudogene O - 20121230 -9606 100421428 RNGTTP1 - - HGNC:39652 21 - RNA guanylyltransferase and 5'-phosphatase pseudogene 1 pseudo RNGTTP1 RNA guanylyltransferase and 5'-phosphatase pseudogene 1 O - 20121230 -9606 100421429 RTEL1P1 - - HGNC:44213 4 - regulator of telomere elongation helicase 1 pseudogene 1 pseudo RTEL1P1 regulator of telomere elongation helicase 1 pseudogene 1 O - 20121230 -9606 100421430 LOC100421430 - - - 15 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421431 LOC100421431 - - - 15 - heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 100421432 LOC100421432 - - - 15 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421433 LOC100421433 - - - 15 - heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo - - - - 20121230 -9606 100421436 UBE2FP1 - - HGNC:44535 3 - ubiquitin-conjugating enzyme E2F (putative) pseudogene 1 pseudo UBE2FP1 ubiquitin-conjugating enzyme E2F (putative) pseudogene 1 O - 20121230 -9606 100421437 LOC100421437 - - - 3 - DnaJ (Hsp40) homolog, subfamily B, member 7 pseudogene pseudo - - - - 20121230 -9606 100421438 LOC100421438 - - - 3 - DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene pseudo - - - - 20121230 -9606 100421439 LOC100421439 - - - 3 - tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 100421444 LOC100421444 - - - 8 - glucosamine-phosphate N-acetyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100421446 LOC100421446 - - - 8 - Wolf-Hirschhorn syndrome candidate 1-like 1 pseudogene pseudo - - - - 20121230 -9606 100421451 LOC100421451 - - - 18 - heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo - - - - 20121230 -9606 100421455 LOC100421455 - - - 7 - eukaryotic translation initiation factor 4E pseudogene pseudo - - - - 20121230 -9606 100421462 LOC100421462 - - - X - trafficking protein particle complex 2-like pseudogene pseudo - - - - 20121230 -9606 100421465 LOC100421465 - - - 1 - ubiquitin-like modifier activating enzyme 2 pseudogene pseudo - - - - 20121230 -9606 100421468 LOC100421468 - - - 1 - ubiquitin-like modifier activating enzyme 2 pseudogene pseudo - - - - 20121230 -9606 100421471 LOC100421471 - - - 1 - non-SMC element 4 homolog A (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421472 LOC100421472 - - - 2 - mitochondrial fission regulator 2 pseudogene pseudo - - - - 20121230 -9606 100421473 TVP23BP2 - FAM18B4P HGNC:38869 2 - trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 2 pseudo TVP23BP2 trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100421474 LOC100421474 - - - 2 - family with sequence similarity 49, member B pseudogene pseudo - - - - 20121230 -9606 100421476 LOC100421476 - - - 2 - family with sequence similarity 71, member A pseudogene pseudo - - - - 20121230 -9606 100421478 LOC100421478 - - - 9 - family with sequence similarity 71, member B pseudogene pseudo - - - - 20121230 -9606 100421479 HTR1DP1 - - HGNC:5290 12 - 5-hydroxytryptamine (serotonin) receptor 1D pseudogene 1 pseudo HTR1DP1 5-hydroxytryptamine (serotonin) receptor 1D pseudogene 1 O - 20121230 -9606 100421480 LOC100421480 - - - 12 - tumor protein, translationally-controlled 1 pseudogene pseudo - - - - 20121230 -9606 100421482 LOC100421482 - - - 12 - DnaJ (Hsp40) homolog, subfamily C, member 2 pseudogene pseudo - - - - 20121230 -9606 100421483 LOC100421483 - - - 19 - transforming growth factor, beta receptor 1 pseudogene pseudo - - - - 20121230 -9606 100421484 MARK2P11 - - HGNC:39802 5 - MAP/microtubule affinity-regulating kinase 2 pseudogene 11 pseudo MARK2P11 MAP/microtubule affinity-regulating kinase 2 pseudogene 11 O - 20121230 -9606 100421485 MARK2P5 - - HGNC:39796 5 - MAP/microtubule affinity-regulating kinase 2 pseudogene 5 pseudo MARK2P5 MAP/microtubule affinity-regulating kinase 2 pseudogene 5 O - 20121230 -9606 100421487 FAM58CP - FAM58AP1|FAM58Y HGNC:38436 Y - family with sequence similarity 58, member A pseudogene 1 pseudo FAM58CP family with sequence similarity 58, member C, pseudogene O - 20121230 -9606 100421490 LOC100421490 - - - 20 - DnaJ (Hsp40) homolog, subfamily C, member 9 pseudogene pseudo - - - - 20121230 -9606 100421493 LOC100421493 - - - 4 - family with sequence similarity 64, member A pseudogene pseudo - - - - 20121230 -9606 100421494 LOC100421494 - - - 4 - MAP/microtubule affinity-regulating kinase 2 pseudogene pseudo - - - - 20121230 -9606 100421495 ACTR6P1 - - HGNC:44210 4 - ARP6 actin-related protein 6 homolog (yeast) pseudogene 1 pseudo ACTR6P1 ARP6 actin-related protein 6 homolog (yeast) pseudogene 1 O - 20121230 -9606 100421496 MARK2P4 - - HGNC:39795 4 - MAP/microtubule affinity-regulating kinase 2 pseudogene 4 pseudo MARK2P4 MAP/microtubule affinity-regulating kinase 2 pseudogene 4 O - 20121230 -9606 100421498 MARK2P8 - - HGNC:39799 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene 8 pseudo MARK2P8 MAP/microtubule affinity-regulating kinase 2 pseudogene 8 O - 20121230 -9606 100421499 LOC100421499 - - - 3 - MAP/microtubule affinity-regulating kinase 4 pseudogene pseudo - - - - 20121230 -9606 100421500 MARK2P6 - - HGNC:39797 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene 6 pseudo MARK2P6 MAP/microtubule affinity-regulating kinase 2 pseudogene 6 O - 20121230 -9606 100421501 MARK2P1 - - HGNC:39792 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene 1 pseudo MARK2P1 MAP/microtubule affinity-regulating kinase 2 pseudogene 1 O - 20121230 -9606 100421502 MARK2P2 - - HGNC:39793 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene 2 pseudo MARK2P2 MAP/microtubule affinity-regulating kinase 2 pseudogene 2 O - 20121230 -9606 100421503 LOC100421503 - - - 3 - MAP/microtubule affinity-regulating kinase 3 pseudogene pseudo - - - - 20121230 -9606 100421504 LOC100421504 - - - 3 - MAP/microtubule affinity-regulating kinase 4 pseudogene pseudo - - - - 20121230 -9606 100421505 LOC100421505 - - - 3 - MAP/microtubule affinity-regulating kinase 4 pseudogene pseudo - - - - 20121230 -9606 100421506 ILF2P1 - - HGNC:44695 3 - interleukin enhancer binding factor 2 pseudogene 1 pseudo ILF2P1 interleukin enhancer binding factor 2 pseudogene 1 O - 20121230 -9606 100421507 MARK2P3 - - HGNC:39794 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene 3 pseudo MARK2P3 MAP/microtubule affinity-regulating kinase 2 pseudogene 3 O - 20121230 -9606 100421508 LOC100421508 - - - 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene pseudo - - - - 20121230 -9606 100421509 LOC100421509 - - - 3 - La ribonucleoprotein domain family, member 7 pseudogene pseudo - - - - 20121230 -9606 100421510 LOC100421510 - - - 3 - family with sequence similarity 20, member B pseudogene pseudo - - - - 20121230 -9606 100421511 LOC100421511 - - - 6 - MAP/microtubule affinity-regulating kinase 2 pseudogene pseudo - - - - 20121230 -9606 100421512 LOC100421512 - - - 6 - RNA binding protein with multiple splicing 2 pseudogene pseudo - - - - 20121230 -9606 100421513 LOC100421513 - - - 6 - transducin (beta)-like 1 X-linked receptor 1 pseudogene pseudo - - - - 20121230 -9606 100421515 BMPR1APS1 - - HGNC:21742 6 6q22.33 bone morphogenetic protein receptor, type IA pseudogene 1 pseudo BMPR1APS1 bone morphogenetic protein receptor, type IA pseudogene 1 O - 20121230 -9606 100421517 LOC100421517 - - - 6 - DnaJ (Hsp40) homolog, subfamily C, member 17 pseudogene pseudo - - - - 20121230 -9606 100421518 LOC100421518 - - - 6 - MAD2 mitotic arrest deficient-like 1 (yeast) pseudogene pseudo - - - - 20121230 -9606 100421523 LOC100421523 - - - 17 - UDP-N-acteylglucosamine pyrophosphorylase 1 pseudogene pseudo - - - - 20121230 -9606 100421525 LOC100421525 - - - 17 - DnaJ (Hsp40) homolog, subfamily B, member 7 pseudogene pseudo - - - - 20121230 -9606 100421527 LOC100421527 - - - 18 - DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene pseudo - - - - 20121230 -9606 100421528 EIF4BP5 - - HGNC:37938 16 - eukaryotic translation initiation factor 4B pseudogene 5 pseudo EIF4BP5 eukaryotic translation initiation factor 4B pseudogene 5 O - 20121230 -9606 100421531 MARK2P7 - - HGNC:39798 7 - MAP/microtubule affinity-regulating kinase 2 pseudogene 7 pseudo MARK2P7 MAP/microtubule affinity-regulating kinase 2 pseudogene 7 O - 20121230 -9606 100421533 EIF4A1P10 - - HGNC:37930 X - eukaryotic translation initiation factor 4A1 pseudogene 10 pseudo EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 O - 20121230 -9606 100421535 GEMIN8P3 - - HGNC:37978 X - gem (nuclear organelle) associated protein 8 pseudogene 3 pseudo GEMIN8P3 gem (nuclear organelle) associated protein 8 pseudogene 3 O - 20121230 -9606 100421536 LOC100421536 - - - 1 - diphosphoinositol pentakisphosphate kinase 2 pseudogene pseudo - - - - 20121230 -9606 100421537 LOC100421537 - - - 1 - inositol monophosphatase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100421539 SUZ12P2 - - HGNC:43872 14 - suppressor of zeste 12 homolog pseudogene 2 pseudo SUZ12P2 suppressor of zeste 12 homolog pseudogene 2 O - 20121230 -9606 100421541 LOC100421541 - - - 14 - DnaJ (Hsp40) homolog, subfamily C, member 9 pseudogene pseudo - - - - 20121230 -9606 100421542 DNAJA1P6 - - HGNC:39342 22 - DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 6 pseudo DNAJA1P6 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 6 O - 20121230 -9606 100421545 LOC100421545 - - - 22 - eukaryotic translation initiation factor 4H pseudogene pseudo - - - - 20121230 -9606 100421548 LOC100421548 - - - 2 - family with sequence similarity 178, member B pseudogene pseudo - - - - 20121209 -9606 100421549 LOC100421549 - - - 9 - replication factor C (activator 1) 5, 36.5kDa pseudogene pseudo - - - - 20121230 -9606 100421550 LOC100421550 - - - 12 - MAP/microtubule affinity-regulating kinase 3 pseudogene pseudo - - - - 20121230 -9606 100421552 LOC100421552 - - - 19 - family with sequence similarity 47, member C pseudogene pseudo - - - - 20121230 -9606 100421558 LOC100421558 - - - 11 - MAP/microtubule affinity-regulating kinase 2 pseudogene pseudo - - - - 20121230 -9606 100421559 LOC100421559 - - - 11 - adaptor-related protein complex 5, mu 1 subunit pseudogene pseudo - - - - 20121230 -9606 100421560 GCNT1P2 - - HGNC:37972 5 - glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 2 pseudo GCNT1P2 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 2 O - 20121230 -9606 100421561 LOC100421561 - - - 5 5q12.1 family with sequence similarity 133, member A pseudogene pseudo - - - - 20121230 -9606 100421565 MARK2P12 - - HGNC:39803 13 - MAP/microtubule affinity-regulating kinase 2 pseudogene 12 pseudo MARK2P12 MAP/microtubule affinity-regulating kinase 2 pseudogene 12 O - 20121230 -9606 100421566 FAM58DP - - HGNC:42022 13 - family with sequence similarity 58, member A pseudogene pseudo FAM58DP family with sequence similarity 58, member D, pseudogene O - 20121230 -9606 100421569 LOC100421569 - - - 20 - glyoxylate reductase 1 homolog (Arabidopsis) pseudogene pseudo - - - - 20121230 -9606 100421572 MESTP2 - - HGNC:18208 15 - mesoderm specific transcript pseudogene 2 pseudo MESTP2 mesoderm specific transcript pseudogene 2 O - 20121230 -9606 100421574 LOC100421574 - - - 15 - family with sequence similarity 47, member C pseudogene pseudo - - - - 20121230 -9606 100421577 LOC100421577 - - - 10 - family with sequence similarity 21, member A pseudogene pseudo - - - - 20121230 -9606 100421579 LOC100421579 - - - 10 - eukaryotic translation initiation factor 4A2 pseudogene pseudo - - - - 20121230 -9606 100421580 LOC100421580 - - - 3 - family with sequence similarity 175, member A pseudogene pseudo - - - - 20121230 -9606 100421581 GCNT1P3 - - HGNC:37973 3 - glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 3 pseudo GCNT1P3 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 3 O - 20121230 -9606 100421582 PAIP1P1 - bCX300M20.3|bPG254M11.3|bQB44E15.5 HGNC:18240 6 6p21.3 poly(A) binding protein interacting protein 1 pseudogene 1 pseudo PAIP1P1 poly(A) binding protein interacting protein 1 pseudogene 1 O - 20121230 -9606 100421583 LOC100421583 - - - 6 - hormonally up-regulated Neu-associated kinase pseudogene pseudo - - - - 20121230 -9606 100421587 LOC100421587 - - - 18 - family with sequence similarity 38, member A pseudogene pseudo - - - - 20121230 -9606 100421588 FAM60BP - HsT2323 HGNC:19052 18 18q11.2 family with sequence similarity 60, member A pseudogene pseudo FAM60BP family with sequence similarity 60, member B pseudogene O - 20121230 -9606 100421589 LRRC37A7P - - HGNC:43792 18 - leucine rich repeat containing 37, member A7, pseudogene pseudo LRRC37A7P leucine rich repeat containing 37, member A7, pseudogene O - 20121230 -9606 100421591 LOC100421591 - - - 18 - family with sequence similarity 76, member A pseudogene pseudo - - - - 20121230 -9606 100421593 LOC100421593 - - - 16 - family with sequence similarity 71, member A pseudogene pseudo - - - - 20121230 -9606 100421594 LOC100421594 - - - 16 - mitochondrial carrier 2 pseudogene pseudo - - - - 20121230 -9606 100421595 LOC100421595 - - - 7 - thyroid hormone receptor associated protein 3 pseudogene pseudo - - - - 20121230 -9606 100421597 LOC100421597 - - - 7 - peptidylprolyl isomerase (cyclophilin)-like 4 pseudogene pseudo - - - - 20121230 -9606 100421598 GCNT1P5 - - HGNC:37975 7 - glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 5 pseudo GCNT1P5 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 5 O - 20121230 -9606 100421599 TVP23CP1 - - HGNC:44646 7 - trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) pseudogene 1 pseudo TVP23CP1 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100421601 LOC100421601 - - - X - phosphoribosyl pyrophosphate amidotransferase pseudogene pseudo - - - - 20121230 -9606 100421602 LOC100421602 - - - X - CDC42 binding protein kinase beta (DMPK-like) pseudogene pseudo - - - - 20121230 -9606 100421603 LOC100421603 - - - X - family with sequence similarity 156, member A pseudogene pseudo - - - - 20121230 -9606 100421606 LOC100421606 - - - 1 - family with sequence similarity 133, member A pseudogene pseudo - - - - 20121230 -9606 100421610 LOC100421610 - - - 1 - complement component 4 binding protein, alpha pseudogene pseudo - - - - 20121230 -9606 100421611 LOC100421611 - - - 14 - family with sequence similarity 71, member B pseudogene pseudo - - - - 20121230 -9606 100421614 LOC100421614 - - - 22 - ARP2 actin-related protein 2 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100421617 LOC100421617 - - - 12 - family with sequence similarity 133, member A pseudogene pseudo - - - - 20121230 -9606 100421618 LOC100421618 - - - 12 - family with sequence similarity 166, member A pseudogene pseudo - - - - 20121230 -9606 100421620 LOC100421620 - - - 19 - polymerase (RNA) mitochondrial (DNA directed) pseudogene pseudo - - - - 20121230 -9606 100421621 LOC100421621 - - - 19 - family with sequence similarity 187, member B pseudogene pseudo - - - - 20121230 -9606 100421622 LOC100421622 - - - 11 - family with sequence similarity 91, member A1 pseudogene pseudo - - - - 20121230 -9606 100421623 LOC100421623 - - - 5 - zona pellucida glycoprotein 3 (sperm receptor) pseudogene pseudo - - - - 20121230 -9606 100421629 METTL21AP1 - - HGNC:41921 21 - methyltransferase like 21A pseudogene 1 pseudo METTL21AP1 methyltransferase like 21A pseudogene 1 O - 20121230 -9606 100421630 LOC100421630 - - - 4 - cutaneous T-cell lymphoma-associated antigen 1 pseudogene pseudo - - - - 20121230 -9606 100421632 LOC100421632 - - - 15 - thyroid hormone receptor associated protein 3 pseudogene pseudo - - - - 20121230 -9606 100421633 LOC100421633 - - - 10 - tryptophanyl tRNA synthetase 2, mitochondrial pseudogene pseudo - - - - 20121230 -9606 100421634 LOC100421634 - - - 10 - cubilin (intrinsic factor-cobalamin receptor) pseudogene pseudo - - - - 20121230 -9606 100421636 LOC100421636 - - - 3 - poly (ADP-ribose) polymerase family, member 14 pseudogene pseudo - - - - 20121230 -9606 100421637 LOC100421637 - - - 3 - acyl-CoA synthetase long-chain family member 3 pseudogene pseudo - - - - 20121230 -9606 100421638 CTAGE13P - - HGNC:37298 6 - CTAGE family, member 13, pseudogene pseudo CTAGE13P CTAGE family, member 13, pseudogene O - 20121230 -9606 100421641 LOC100421641 - - - 16 - zinc finger CCHC-type and RNA binding motif 1 pseudogene pseudo - - - - 20121230 -9606 100421642 LOC100421642 - - - 7 - zona pellucida glycoprotein 3 (sperm receptor) pseudogene pseudo - - - - 20121230 -9606 100421646 LOC100421646 - - - 14 - von Willebrand factor A domain containing 5B2 pseudogene pseudo - - - - 20121230 -9606 100421648 SUCLA2P3 - - HGNC:38103 2 - succinate-CoA ligase, ADP-forming, beta subunit pseudogene 3 pseudo SUCLA2P3 succinate-CoA ligase, ADP-forming, beta subunit pseudogene 3 O - 20121230 -9606 100421651 LOC100421651 - - - 2 - ClpX caseinolytic peptidase X homolog (E. coli) pseudogene pseudo - - - - 20121230 -9606 100421652 PTP4A1P1 - - HGNC:41928 2 - protein tyrosine phosphatase type IVA, member 1 pseudogene 1 pseudo PTP4A1P1 protein tyrosine phosphatase type IVA, member 1 pseudogene 1 O - 20121230 -9606 100421655 LOC100421655 - - - 9 - adaptor-related protein complex 3, mu 2 subunit pseudogene pseudo - - - - 20121230 -9606 100421657 LOC100421657 - - - 19 - heterogeneous nuclear ribonucleoprotein D-like pseudogene pseudo - - - - 20121230 -9606 100421658 LOC100421658 - - - 11 - spastic ataxia of Charlevoix-Saguenay (sacsin) pseudogene pseudo - - - - 20121230 -9606 100421663 LOC100421663 - - - 20 - cutaneous T-cell lymphoma-associated antigen 1 pseudogene pseudo - - - - 20121230 -9606 100421664 LOC100421664 - - - 4 - Spi-C transcription factor (Spi-1/PU.1 related) pseudogene pseudo - - - - 20121230 -9606 100421667 LOC100421667 - - - 15 - family with sequence similarity 108, member C1 pseudogene pseudo - - - - 20121230 -9606 100421669 LOC100421669 - - - 3 - ribosome binding protein 1 homolog 180kDa (dog) pseudogene pseudo - - - - 20121230 -9606 100421670 LOC100421670 - - - 3 - developmentally regulated GTP binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100421671 SUCLG2P1 - - HGNC:43996 3 - succinate-CoA ligase, GDP-forming, beta subunit pseudogene 1 pseudo SUCLG2P1 succinate-CoA ligase, GDP-forming, beta subunit pseudogene 1 O - 20121230 -9606 100421672 LOC100421672 - - - 3 - small nuclear ribonucleoprotein polypeptide B pseudogene pseudo - - - - 20121230 -9606 100421673 LOC100421673 - - - 8 - small nuclear ribonucleoprotein polypeptide B pseudogene pseudo - - - - 20121230 -9606 100421674 LOC100421674 - - - 17 - kelch repeat and BTB (POZ) domain containing 2 pseudogene pseudo - - - - 20121230 -9606 100421675 ARL2BPP9 - - HGNC:39453 17 - ADP-ribosylation factor-like 2 binding protein pseudogene 9 pseudo ARL2BPP9 ADP-ribosylation factor-like 2 binding protein pseudogene 9 O - 20121230 -9606 100421681 PTP4A1P7 - - HGNC:41934 1 - protein tyrosine phosphatase type IVA, member 1 pseudogene 7 pseudo PTP4A1P7 protein tyrosine phosphatase type IVA, member 1 pseudogene 7 O - 20121230 -9606 100421684 LOC100421684 - - - 14 - tetratricopeptide repeat domain 34 pseudogene pseudo - - - - 20121230 -9606 100421685 LOC100421685 - - - 22 - tetratricopeptide repeat domain 34 pseudogene pseudo - - - - 20121230 -9606 100421689 LOC100421689 - - - 2 - NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421690 LOC100421690 - - - 9 - NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421691 LOC100421691 - - - 9 - NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421692 LOC100421692 - - - 9 - leishmanolysin-like (metallopeptidase M8 family) pseudogene pseudo - - - - 20121230 -9606 100421693 LOC100421693 - - - 9 - NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421694 GLULP5 - - HGNC:37989 12 - glutamate-ammonia ligase (glutamine synthetase) pseudogene 5 pseudo GLULP5 glutamate-ammonia ligase (glutamine synthetase) pseudogene 5 O - 20121230 -9606 100421695 LOC100421695 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421696 LOC100421696 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421697 LOC100421697 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421698 LOC100421698 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421699 LOC100421699 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421700 LOC100421700 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421701 LOC100421701 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421702 LOC100421702 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421703 LOC100421703 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421704 LOC100421704 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421705 LOC100421705 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421706 LOC100421706 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421707 LOC100421707 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421708 LOC100421708 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421709 LOC100421709 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421710 LOC100421710 - - - 19 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene pseudo - - - - 20121230 -9606 100421712 SUCLG2P3 - - HGNC:43998 11 - succinate-CoA ligase, GDP-forming, beta subunit pseudogene 3 pseudo SUCLG2P3 succinate-CoA ligase, GDP-forming, beta subunit pseudogene 3 O - 20121230 -9606 100421716 UBE2Q2P4Y - UBE2Q2PY1 HGNC:38429 Y - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 4, Y-linked pseudo UBE2Q2P4Y ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 4, Y-linked O - 20121230 -9606 100421717 UBE2Q2P5Y - UBE2Q2PY2 HGNC:38466 Y - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 5, Y-linked pseudo UBE2Q2P5Y ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 5, Y-linked O - 20121209 -9606 100421718 NEK4P1 - - HGNC:39649 21 - NIMA-related kinase 4 pseudogene 1 pseudo NEK4P1 NIMA-related kinase 4 pseudogene 1 O - 20121230 -9606 100421721 LOC100421721 - - - 4 - NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421724 BNIP3P5 - - HGNC:39658 15 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 5 pseudo BNIP3P5 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 5 O - 20121230 -9606 100421728 NEK4P3 - - HGNC:39651 10 - NIMA-related kinase 4 pseudogene 3 pseudo NEK4P3 NIMA-related kinase 4 pseudogene 3 O - 20121230 -9606 100421729 VPS26BP1 - - HGNC:44612 3 - vacuolar protein sorting 26 homolog B (S. pombe) pseudogene 1 pseudo VPS26BP1 vacuolar protein sorting 26 homolog B (S. pombe) pseudogene 1 O - 20121230 -9606 100421730 LOC100421730 - - - 3 - transmembrane emp24 domain trafficking protein 2 pseudogene pseudo - - - - 20121230 -9606 100421731 VPS26AP1 - - HGNC:44611 3 - vacuolar protein sorting 26 homolog A (S. pombe) pseudogene 1 pseudo VPS26AP1 vacuolar protein sorting 26 homolog A (S. pombe) pseudogene 1 O - 20121230 -9606 100421733 EEF1GP6 - - HGNC:44561 6 - eukaryotic translation elongation factor 1 gamma pseudogene 6 pseudo EEF1GP6 eukaryotic translation elongation factor 1 gamma pseudogene 6 O - 20121230 -9606 100421734 NEK4P2 - - HGNC:39650 17 - NIMA-related kinase 4 pseudogene 2 pseudo NEK4P2 NIMA-related kinase 4 pseudogene 2 O - 20121230 -9606 100421736 BNIP3P3 - - HGNC:39656 18 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 3 pseudo BNIP3P3 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 3 O - 20121230 -9606 100421737 LOC100421737 - - - 18 - ubiquitin specific peptidase 4 (proto-oncogene) pseudogene pseudo - - - - 20121230 -9606 100421741 LOC100421741 - - - 7 - v-raf murine sarcoma 3611 viral oncogene homolog pseudogene pseudo - - - - 20121230 -9606 100421742 LOC100421742 - - - 7 - NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) pseudo - - - - 20121230 -9606 100421746 LOC100421746 - - - X - P antigen family, member 5 (prostate associated) pseudogene pseudo - - - - 20121230 -9606 100421749 LOC100421749 - - - 1 - NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421751 LOC100421751 - - - 14 - ATPase, Na+/K+ transporting, beta 3 polypeptide pseudogene pseudo - - - - 20121230 -9606 100421754 BNIP3P2 - - HGNC:39655 22 - BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 2 pseudo BNIP3P2 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 2 O - 20121230 -9606 100421756 LOC100421756 - - - 2 - eukaryotic translation elongation factor 1 beta 2 pseudogene pseudo - - - - 20121230 -9606 100421765 LOC100421765 - - - 15 - NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421766 LOC100421766 - - - 15 - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene pseudo - - - - 20121230 -9606 100421767 LOC100421767 - - - 15 - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene pseudo - - - - 20121209 -9606 100421768 LOC100421768 - - - 15 - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene pseudo - - - - 20121230 -9606 100421769 LOC100421769 - - - 15 - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene pseudo - - - - 20121209 -9606 100421770 LOC100421770 - - - 15 - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene pseudo - - - - 20121209 -9606 100421771 LOC100421771 - - - 15 - ubiquitin-conjugating enzyme E2Q family member 2 pseudogene pseudo - - - - 20121230 -9606 100421774 LOC100421774 - - - 3 - eukaryotic translation elongation factor 1 beta 2 pseudogene pseudo - - - - 20121230 -9606 100421775 LOC100421775 - - - 6 - leucine rich repeat containing 8 family, member B pseudogene pseudo - - - - 20121230 -9606 100421776 NIPA2P4 - - HGNC:42044 8 - non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 4 pseudo NIPA2P4 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 4 O - 20121230 -9606 100421779 LOC100421779 - - - 16 - acyl-CoA synthetase medium-chain family member 5 pseudogene pseudo - - - - 20121230 -9606 100421782 LOC100421782 - - - 7 - heterogeneous nuclear ribonucleoprotein A1-like 2 pseudogene pseudo - - - - 20121230 -9606 100421784 LOC100421784 - - - X - serine/threonine kinase 24 (STE20 homolog, yeast) pseudogene pseudo - - - - 20121230 -9606 100421787 LOC100421787 - - - 14 - sulfotransferase family, cytosolic, 1C, member 2 pseudogene pseudo - - - - 20121230 -9606 100421788 LOC100421788 - - - 2 - SET domain containing (lysine methyltransferase) 8 pseudogene pseudo - - - - 20121230 -9606 100421790 LOC100421790 - - - 9 - pseudouridylate synthase 7 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421793 LOC100421793 - - - 11 - tRNA methyltransferase 11 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100421794 LOC100421794 - - - 11 - heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudogene pseudo - - - - 20121230 -9606 100421795 LOC100421795 - - - 5 - ST3 beta-galactoside alpha-2,3-sialyltransferase 5 pseudogene pseudo - - - - 20121230 -9606 100421796 EEF1A1P19 - - HGNC:37892 5 - eukaryotic translation elongation factor 1 alpha 1 pseudogene 19 pseudo EEF1A1P19 eukaryotic translation elongation factor 1 alpha 1 pseudogene 19 O - 20121230 -9606 100421797 EEF1A1P20 - - HGNC:37893 5 - eukaryotic translation elongation factor 1 alpha 1 pseudogene 20 pseudo EEF1A1P20 eukaryotic translation elongation factor 1 alpha 1 pseudogene 20 O - 20121230 -9606 100421798 LOC100421798 - - - 5 - eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 100421799 LONRF2P2 - - HGNC:39829 13 - LON peptidase N-terminal domain and ring finger 2 pseudogene 2 pseudo LONRF2P2 LON peptidase N-terminal domain and ring finger 2 pseudogene 2 O - 20121230 -9606 100421802 LOC100421802 - - - 4 - protein phosphatase 2, regulatory subunit B, alpha pseudogene pseudo - - - - 20121230 -9606 100421803 LOC100421803 - - - 4 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121230 -9606 100421804 LOC100421804 - - - 4 - ST3 beta-galactoside alpha-2,3-sialyltransferase 1 pseudogene pseudo - - - - 20121230 -9606 100421805 LOC100421805 - - - 4 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121230 -9606 100421806 LOC100421806 - - - 4 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121230 -9606 100421807 EEF1A1P21 - - HGNC:37894 4 - eukaryotic translation elongation factor 1 alpha 1 pseudogene 21 pseudo EEF1A1P21 eukaryotic translation elongation factor 1 alpha 1 pseudogene 21 O - 20121230 -9606 100421808 LOC100421808 - - - 4 - protein phosphatase 2, regulatory subunit B, gamma pseudogene pseudo - - - - 20121230 -9606 100421809 LOC100421809 - - - 15 - LON peptidase N-terminal domain and ring finger 2 pseudogene pseudo - - - - 20121209 -9606 100421810 LOC100421810 - - - 15 - LON peptidase N-terminal domain and ring finger 2 pseudogene pseudo - - - - 20121209 -9606 100421811 LOC100421811 - - - 15 - fumarylacetoacetate hydrolase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100421813 LOC100421813 - - - 3 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121230 -9606 100421815 EEF1A1P23 - - HGNC:37896 3 - eukaryotic translation elongation factor 1 alpha 1 pseudogene 23 pseudo EEF1A1P23 eukaryotic translation elongation factor 1 alpha 1 pseudogene 23 O - 20121230 -9606 100421816 LOC100421816 - - - 3 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121230 -9606 100421817 LOC100421817 - - - 3 - eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 100421819 LOC100421819 - - - 3 - SET domain containing (lysine methyltransferase) 8 pseudogene pseudo - - - - 20121230 -9606 100421820 EEF1A1P36 - - HGNC:37914 6 - eukaryotic translation elongation factor 1 alpha 1 pseudogene 36 pseudo EEF1A1P36 eukaryotic translation elongation factor 1 alpha 1 pseudogene 36 O - 20121230 -9606 100421821 LOC100421821 - - - 8 - SMEK homolog 2, suppressor of mek1 (Dictyostelium) pseudogene pseudo - - - - 20121230 -9606 100421822 LOC100421822 - - - 8 - protein tyrosine phosphatase, non-receptor type 11 pseudogene pseudo - - - - 20121230 -9606 100421823 LOC100421823 - - - 8 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121209 -9606 100421824 LOC100421824 - - - 8 - polymerase (DNA directed), epsilon 2, accessory subunit pseudogene pseudo - - - - 20121230 -9606 100421825 EEF1A1P37 - - HGNC:37915 8 - eukaryotic translation elongation factor 1 alpha 1 pseudogene 37 pseudo EEF1A1P37 eukaryotic translation elongation factor 1 alpha 1 pseudogene 37 O - 20121230 -9606 100421827 LONRF2P1 - - HGNC:39828 18 - LON peptidase N-terminal domain and ring finger 2 pseudogene 1 pseudo LONRF2P1 LON peptidase N-terminal domain and ring finger 2 pseudogene 1 O - 20121230 -9606 100421828 LOC100421828 - - - 16 - heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudogene pseudo - - - - 20121230 -9606 100421829 EEF1A1P10 - EEF1AL8 HGNC:3205 7 - eukaryotic translation elongation factor 1 alpha 1 pseudogene 10 pseudo EEF1A1P10 eukaryotic translation elongation factor 1 alpha 1 pseudogene 10 O - 20121230 -9606 100421840 LOC100421840 - - - 1 - eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 100421842 LOC100421842 - - - 1 - eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo - - - - 20121230 -9606 100421845 LOC100421845 - - - 2 - olfactory receptor, family 1, subfamily S, member 2 pseudogene pseudo - - - - 20120318 -9606 100421846 LOC100421846 - - - 2 - olfactory receptor, family 9, subfamily G, member 4 pseudogene pseudo - - - - 20120318 -9606 100421848 LOC100421848 - - - 9 - olfactory receptor, family 2, subfamily S, member 2 pseudogene pseudo - - - - 20120318 -9606 100421849 LOC100421849 - - - 9 - olfactory receptor, family 2, subfamily S, member 2 pseudogene pseudo - - - - 20120318 -9606 100421850 LOC100421850 - - - 9 - olfactory receptor, family 2, subfamily S, member 2 pseudogene pseudo - - - - 20120318 -9606 100421852 LOC100421852 - - - 9 - olfactory receptor, family 2, subfamily K, member 2 pseudogene pseudo - - - - 20120318 -9606 100421853 LOC100421853 - - - 9 - olfactory receptor, family 1, subfamily N, member 1 pseudogene pseudo - - - - 20120318 -9606 100421854 EEF1A1P4 - EEF1AL2 HGNC:3199 12 12p12.3-p12.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 4 pseudo EEF1A1P4 eukaryotic translation elongation factor 1 alpha 1 pseudogene 4 O - 20121230 -9606 100421855 LOC100421855 - - - 12 - SCO1 cytochrome c oxidase assembly protein pseudogene pseudo - - - - 20121230 -9606 100421859 LOC100421859 - - - 11 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121230 -9606 100421860 LOC100421860 - - - 11 - ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene pseudo - - - - 20121230 -9606 100421861 CBX3P3 - - HGNC:42875 5 - chromobox homolog 3 pseudogene 3 pseudo CBX3P3 chromobox homolog 3 pseudogene 3 O - 20121230 -9606 100421863 LOC100421863 - - - 5 - ash2 (absent, small, or homeotic)-like (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100421864 LOC100421864 - - - 5 - olfactory receptor, family 7, subfamily D, member 2 pseudogene pseudo - - - - 20120318 -9606 100421865 EEF1A1P3 - EEF1AL|EEF1AL1 HGNC:3194 13 13q21 eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 pseudo EEF1A1P3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 O - 20121230 -9606 100421868 LOC100421868 - - - 4 - glucose-fructose oxidoreductase domain containing 2 pseudogene pseudo - - - - 20121230 -9606 100421870 LOC100421870 - - - 10 - WW domain containing E3 ubiquitin protein ligase 2 pseudogene pseudo - - - - 20121230 -9606 100421874 LOC100421874 - - - 3 - olfactory receptor, family 5, subfamily H, member 2 pseudogene pseudo - - - - 20120318 -9606 100421880 LOC100421880 - - - 6 - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100421885 LOC100421885 - - - 6 - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100421886 LOC100421886 - - - 6 - olfactory receptor, family 2, subfamily W, member 1 pseudogene pseudo - - - - 20120318 -9606 100421887 LOC100421887 - - - 6 - olfactory receptor, family 2, subfamily W, member 3 pseudogene pseudo - - - - 20120318 -9606 100421893 LOC100421893 - - - 8 - insulin-like growth factor 2 mRNA binding protein 2 pseudogene pseudo - - - - 20121230 -9606 100421894 LOC100421894 - - - 18 - exportin, tRNA (nuclear export receptor for tRNAs) pseudogene pseudo - - - - 20121230 -9606 100421898 LOC100421898 - - - 7 - olfactory receptor, family 2, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421901 LOC100421901 - - - 7 - immunoglobulin (CD79A) binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100421902 LOC100421902 - - - 7 - olfactory receptor, family 9, subfamily A, member 2 pseudogene pseudo - - - - 20120318 -9606 100421904 LOC100421904 - - - 7 - olfactory receptor, family 2, subfamily F, member 1 pseudogene pseudo - - - - 20120318 -9606 100421907 LOC100421907 - - - 7 - olfactory receptor, family 2, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421909 LOC100421909 - - - X - olfactory receptor, family 8, subfamily B, member 4 pseudogene pseudo - - - - 20120318 -9606 100421910 LOC100421910 - - - X - olfactory receptor, family 5, subfamily R, member 1 pseudogene pseudo - - - - 20121230 -9606 100421911 LOC100421911 - - - X - olfactory receptor, family 1, subfamily M, member 1 pseudogene pseudo - - - - 20120318 -9606 100421912 LOC100421912 - - - X - olfactory receptor, family 1, subfamily N, member 1 pseudogene pseudo - - - - 20120318 -9606 100421913 LOC100421913 - - - X - olfactory receptor, family 2, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100421925 LOC100421925 - - - 2 - MOB family member 4, phocein pseudogene pseudo - - - - 20121230 -9606 100421926 LOC100421926 - - - 2 - nascent polypeptide-associated complex alpha subunit pseudogene pseudo - - - - 20121230 -9606 100421927 LOC100421927 - - - 2 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100421929 LOC100421929 - - - 2 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100421933 LOC100421933 - - - 9 - olfactory receptor, family 13, subfamily C, member 2 pseudogene pseudo - - - - 20120318 -9606 100421934 LOC100421934 - - - 9 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100421935 LOC100421935 - - - 9 - olfactory receptor, family 13, subfamily C, member 8 pseudogene pseudo - - - - 20120318 -9606 100421937 LOC100421937 - - - 9 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100421938 LOC100421938 - - - 9 - olfactory receptor, family 13, subfamily D, member 1 pseudogene pseudo - - - - 20120318 -9606 100421939 LOC100421939 - - - 12 - olfactory receptor, family 5, subfamily M, member 8 pseudogene pseudo - - - - 20120318 -9606 100421941 LOC100421941 - - - 12 - olfactory receptor, family 6, subfamily Y, member 1 pseudogene pseudo - - - - 20120318 -9606 100421942 LOC100421942 - - - 12 - olfactory receptor, family 6, subfamily C, member 2 pseudogene pseudo - - - - 20120318 -9606 100421943 CBX3P5 - - HGNC:42877 12 - chromobox homolog 3 pseudogene 5 pseudo CBX3P5 chromobox homolog 3 pseudogene 5 O - 20121230 -9606 100421944 LOC100421944 - - - 12 - olfactory receptor, family 9, subfamily K, member 2 pseudogene pseudo - - - - 20120318 -9606 100421945 LOC100421945 - - - 12 - olfactory receptor, family 6, subfamily C, member 1 pseudogene pseudo - - - - 20120318 -9606 100421946 LOC100421946 - - - 12 - olfactory receptor, family 6, subfamily C, member 1 pseudogene pseudo - - - - 20120318 -9606 100421947 LOC100421947 - - - 12 - olfactory receptor, family 6, subfamily C, member 3 pseudogene pseudo - - - - 20120318 -9606 100421948 LOC100421948 - - - 12 - olfactory receptor, family 6, subfamily C, member 2 pseudogene pseudo - - - - 20120318 -9606 100421950 LOC100421950 - - - 19 - olfactory receptor, family 7, subfamily C, member 1 pseudogene pseudo - - - - 20120318 -9606 100421951 LOC100421951 - - - 11 - olfactory receptor, family 5, subfamily P, member 3 pseudogene pseudo - - - - 20120318 -9606 100421953 LOC100421953 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421954 LOC100421954 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421955 LOC100421955 - - - 11 - olfactory receptor, family 8, subfamily U, member 1 pseudogene pseudo - - - - 20120318 -9606 100421956 LOC100421956 - - - 11 - olfactory receptor, family 5, subfamily F, member 1 pseudogene pseudo - - - - 20120318 -9606 100421957 LOC100421957 - - - 11 - olfactory receptor, family 8, subfamily D, member 4 pseudogene pseudo - - - - 20120318 -9606 100421958 LOC100421958 - - - 11 - olfactory receptor, family 8, subfamily K, member 5 pseudogene pseudo - - - - 20120318 -9606 100421960 LOC100421960 - - - 11 - olfactory receptor, family 8, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100421961 LOC100421961 - - - 11 - olfactory receptor, family 8, subfamily I, member 2 pseudogene pseudo - - - - 20120318 -9606 100421962 LOC100421962 - - - 11 - olfactory receptor, family 5, subfamily M, member 8 pseudogene pseudo - - - - 20120318 -9606 100421963 LOC100421963 - - - 11 - olfactory receptor, family 5, subfamily M, member 3 pseudogene pseudo - - - - 20120318 -9606 100421964 LOC100421964 - - - 11 - olfactory receptor, family 9, subfamily G, member 9 pseudogene pseudo - - - - 20120318 -9606 100421965 LOC100421965 - - - 11 - olfactory receptor, family 5, subfamily R, member 1 pseudogene pseudo - - - - 20120318 -9606 100421967 LOC100421967 - - - 11 - olfactory receptor, family 9, subfamily I, member 1 pseudogene pseudo - - - - 20120318 -9606 100421968 LOC100421968 - - - 11 - olfactory receptor, family 5, subfamily B, member 3 pseudogene pseudo - - - - 20120318 -9606 100421971 LOC100421971 - - - 11 - olfactory receptor, family 5, subfamily B, member 3 pseudogene pseudo - - - - 20120318 -9606 100421972 LOC100421972 - - - 11 - olfactory receptor, family 5, subfamily A, member 2 pseudogene pseudo - - - - 20120318 -9606 100421973 ARPC3P4 - - HGNC:39434 11 - actin related protein 2/3 complex, subunit 3 pseudogene 4 pseudo ARPC3P4 actin related protein 2/3 complex, subunit 3 pseudogene 4 O - 20121230 -9606 100421975 CBX3P7 - - HGNC:42879 11 - chromobox homolog 3 pseudogene 7 pseudo CBX3P7 chromobox homolog 3 pseudogene 7 O - 20121230 -9606 100421976 LOC100421976 - - - 11 - interferon stimulated exonuclease gene 20kDa-like 2 pseudogene pseudo - - - - 20121230 -9606 100421977 LOC100421977 - - - 11 - olfactory receptor, family 6, subfamily M, member 1 pseudogene pseudo - - - - 20120318 -9606 100421978 LOC100421978 - - - 11 - olfactory receptor, family 6, subfamily M, member 1 pseudogene pseudo - - - - 20120318 -9606 100421984 LOC100421984 - - - 11 - olfactory receptor, family 8, subfamily B, member 8 pseudogene pseudo - - - - 20120318 -9606 100421985 LOC100421985 - - - 11 - olfactory receptor, family 8, subfamily B, member 3 pseudogene pseudo - - - - 20121230 -9606 100421986 LOC100421986 - - - 11 - olfactory receptor, family 5, subfamily P, member 3 pseudogene pseudo - - - - 20120318 -9606 100421989 LOC100421989 - - - 11 - olfactory receptor, family 2, subfamily V, member 2 pseudogene pseudo - - - - 20120318 -9606 100421990 LOC100421990 - - - 11 - olfactory receptor, family 4, subfamily B, member 1 pseudogene pseudo - - - - 20120318 -9606 100421991 LOC100421991 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421992 LOC100421992 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421993 LOC100421993 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421994 LOC100421994 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421995 LOC100421995 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421996 LOC100421996 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421997 LOC100421997 - - - 11 - olfactory receptor, family 4, subfamily A, member 5 pseudogene pseudo - - - - 20120318 -9606 100421998 LOC100421998 - - - 11 - olfactory receptor, family 4, subfamily C, member 6 pseudogene pseudo - - - - 20120318 -9606 100421999 LOC100421999 - - - 11 - olfactory receptor, family 5, subfamily J, member 2 pseudogene pseudo - - - - 20120318 -9606 100422000 LOC100422000 - - - 11 - olfactory receptor, family 5, subfamily J, member 2 pseudogene pseudo - - - - 20120318 -9606 100422001 LOC100422001 - - - 11 - olfactory receptor, family 5, subfamily J, member 2 pseudogene pseudo - - - - 20120318 -9606 100422002 LOC100422002 - - - 11 - olfactory receptor, family 5, subfamily J, member 2 pseudogene pseudo - - - - 20120318 -9606 100422003 LOC100422003 - - - 11 - olfactory receptor, family 8, subfamily K, member 5 pseudogene pseudo - - - - 20120318 -9606 100422004 LOC100422004 - - - 11 - olfactory receptor, family 5, subfamily R, member 1 pseudogene pseudo - - - - 20120318 -9606 100422005 LOC100422005 - - - 11 - olfactory receptor, family 8, subfamily H, member 3 pseudogene pseudo - - - - 20120318 -9606 100422006 LOC100422006 - - - 11 - olfactory receptor, family 8, subfamily H, member 3 pseudogene pseudo - - - - 20120318 -9606 100422007 LOC100422007 - - - 11 - olfactory receptor, family 9, subfamily G, member 9 pseudogene pseudo - - - - 20120318 -9606 100422009 LOC100422009 - - - 11 - olfactory receptor, family 4, subfamily D, member 9 pseudogene pseudo - - - - 20120318 -9606 100422010 LOC100422010 - - - 11 - olfactory receptor, family 8, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100422011 LOC100422011 - - - 11 - olfactory receptor, family 8, subfamily A, member 1 pseudogene pseudo - - - - 20120318 -9606 100422012 LOC100422012 - - - 11 - olfactory receptor, family 8, subfamily A, member 1 pseudogene pseudo - - - - 20120318 -9606 100422013 LOC100422013 - - - 5 - catenin (cadherin-associated protein), beta 1, 88kDa pseudogene pseudo - - - - 20121230 -9606 100422017 LOC100422017 - - - 21 - olfactory receptor, family 4, subfamily F, member 5 pseudogene pseudo - - - - 20120318 -9606 100422018 LOC100422018 - - - 4 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422019 EFTUD1P2 - - HGNC:44202 4 - elongation factor Tu GTP binding domain containing 1 pseudogene 2 pseudo EFTUD1P2 elongation factor Tu GTP binding domain containing 1 pseudogene 2 O - 20121230 -9606 100422020 LOC100422020 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide B17 pseudogene pseudo - - - - 20121230 -9606 100422021 LOC100422021 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide B4 pseudogene pseudo - - - - 20121230 -9606 100422022 LOC100422022 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene pseudo - - - - 20121230 -9606 100422023 UGT2A3P7 - - HGNC:39429 4 - UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene 7 pseudo UGT2A3P7 UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene 7 O - 20121230 -9606 100422024 LOC100422024 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide B7 pseudogene pseudo - - - - 20121230 -9606 100422026 LOC100422026 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene pseudo - - - - 20121230 -9606 100422029 LOC100422029 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide B7 pseudogene pseudo - - - - 20121230 -9606 100422032 LOC100422032 - - - 15 - intraflagellar transport 80 homolog (Chlamydomonas) pseudogene pseudo - - - - 20121230 -9606 100422033 LOC100422033 - - - 15 - olfactory receptor, family 4, subfamily Q, member 3 pseudogene pseudo - - - - 20120318 -9606 100422034 LOC100422034 - - - 10 - olfactory receptor, family 6, subfamily A, member 2 pseudogene pseudo - - - - 20120318 -9606 100422035 LOC100422035 - - - 10 - olfactory receptor, family 6, subfamily A, member 2 pseudogene pseudo - - - - 20120318 -9606 100422036 LOC100422036 - - - 10 - olfactory receptor, family 6, subfamily C, member 2 pseudogene pseudo - - - - 20120318 -9606 100422037 LOC100422037 - - - 3 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422038 LOC100422038 - - - 3 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422039 LOC100422039 - - - 3 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422040 LOC100422040 - - - 3 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422041 LOC100422041 - - - 3 - olfactory receptor, family 5, subfamily AC, member 2 pseudogene pseudo - - - - 20120318 -9606 100422044 LOC100422044 - - - 3 - actin related protein 2/3 complex, subunit 1A, 41kDa pseudogene pseudo - - - - 20121230 -9606 100422045 LOC100422045 - - - 3 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422046 LOC100422046 - - - 8 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422053 LOC100422053 - - - 18 - intraflagellar transport 57 homolog (Chlamydomonas) pseudogene pseudo - - - - 20121230 -9606 100422055 LOC100422055 - - - 16 - vacuolar protein sorting 35 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422056 LOC100422056 - - - 7 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422059 LOC100422059 - - - 7 - ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene pseudo - - - - 20121230 -9606 100422061 LOC100422061 - - - X - olfactory receptor, family 11, subfamily H, member 4 pseudogene pseudo - - - - 20120318 -9606 100422062 LOC100422062 - - - X - olfactory receptor, family 11, subfamily A, member 1 pseudogene pseudo - - - - 20120318 -9606 100422063 LOC100422063 - - - X - olfactory receptor, family 13, subfamily H, member 1 pseudogene pseudo - - - - 20120318 -9606 100422076 LOC100422076 - - - 1 - phosphatidylinositol transfer protein, cytoplasmic 1 pseudogene pseudo - - - - 20121230 -9606 100422081 LOC100422081 - - - 14 - olfactory receptor, family 4, subfamily E, member 2 pseudogene pseudo - - - - 20120318 -9606 100422088 LOC100422088 - - - 22 - ash2 (absent, small, or homeotic)-like (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100422091 LOC100422091 - - - 2 - solute carrier family 30 (zinc transporter), member 6 pseudogene pseudo - - - - 20121230 -9606 100422094 LOC100422094 - - - 2 - potassium channel tetramerisation domain containing 5 pseudogene pseudo - - - - 20121230 -9606 100422098 LOC100422098 - - - 12 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422099 LOC100422099 - - - 12 - olfactory receptor, family 5, subfamily B, member 21 pseudogene pseudo - - - - 20120318 -9606 100422100 LOC100422100 - - - 12 - olfactory receptor, family 6, subfamily C, member 65 pseudogene pseudo - - - - 20120318 -9606 100422101 LOC100422101 - - - 19 - olfactory receptor, family 4, subfamily F, member 21 pseudogene pseudo - - - - 20120318 -9606 100422102 LOC100422102 - - - 19 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422104 LOC100422104 - - - 19 - olfactory receptor, family 7, subfamily A, member 17 pseudogene pseudo - - - - 20120318 -9606 100422106 LOC100422106 - - - 19 - staufen, RNA binding protein, homolog 1 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100422108 LOC100422108 - - - 19 - olfactory receptor, family 4, subfamily F, member 21 pseudogene pseudo - - - - 20120318 -9606 100422110 LOC100422110 - - - 19 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422111 LOC100422111 - - - 19 - olfactory receptor, family 7, subfamily A, member 10 pseudogene pseudo - - - - 20120318 -9606 100422115 LOC100422115 - - - 11 - olfactory receptor, family 52, subfamily B, member 6 pseudogene pseudo - - - - 20120318 -9606 100422116 LOC100422116 - - - 11 - olfactory receptor, family 52, subfamily M, member 1 pseudogene pseudo - - - - 20120318 -9606 100422117 LOC100422117 - - - 11 - olfactory receptor, family 51, subfamily L, member 1 pseudogene pseudo - - - - 20120318 -9606 100422123 LOC100422123 - - - 11 - olfactory receptor, family 51, subfamily I, member 1 pseudogene pseudo - - - - 20120318 -9606 100422124 LOC100422124 - - - 11 - olfactory receptor, family 51, subfamily B, member 4 pseudogene pseudo - - - - 20120318 -9606 100422125 LOC100422125 - - - 11 - olfactory receptor, family 51, subfamily B, member 2 pseudogene pseudo - - - - 20120318 -9606 100422126 LOC100422126 - - - 11 - olfactory receptor, family 51, subfamily I, member 2 pseudogene pseudo - - - - 20120318 -9606 100422127 LOC100422127 - - - 11 - olfactory receptor, family 52, subfamily H, member 1 pseudogene pseudo - - - - 20120318 -9606 100422128 LOC100422128 - - - 11 - olfactory receptor, family 52, subfamily H, member 1 pseudogene pseudo - - - - 20120318 -9606 100422129 LOC100422129 - - - 11 - olfactory receptor, family 56, subfamily A, member 1 pseudogene pseudo - - - - 20120318 -9606 100422131 LOC100422131 - - - 11 - olfactory receptor, family 52, subfamily N, member 1 pseudogene pseudo - - - - 20120318 -9606 100422135 LOC100422135 - - - 11 - olfactory receptor, family 4, subfamily C, member 46 pseudogene pseudo - - - - 20120318 -9606 100422136 LOC100422136 - - - 11 - olfactory receptor, family 4, subfamily A, member 16 pseudogene pseudo - - - - 20120318 -9606 100422137 LOC100422137 - - - 11 - olfactory receptor, family 4, subfamily A, member 15 pseudogene pseudo - - - - 20120318 -9606 100422138 LOC100422138 - - - 11 - olfactory receptor, family 4, subfamily C, member 12 pseudogene pseudo - - - - 20120318 -9606 100422139 LOC100422139 - - - 11 - olfactory receptor, family 5, subfamily B, member 12 pseudogene pseudo - - - - 20120318 -9606 100422140 LOC100422140 - - - 11 - olfactory receptor, family 2, subfamily A, member 42 pseudogene pseudo - - - - 20120318 -9606 100422141 LOC100422141 - - - 11 - olfactory receptor, family 10, subfamily Q, member 1 pseudogene pseudo - - - - 20120318 -9606 100422142 LOC100422142 - - - 11 - olfactory receptor, family 5, subfamily B, member 12 pseudogene pseudo - - - - 20120318 -9606 100422145 LOC100422145 - - - 11 - olfactory receptor, family 2, subfamily AT, member 4 pseudogene pseudo - - - - 20120318 -9606 100422148 LOC100422148 - - - 11 - olfactory receptor, family 52, subfamily B, member 4 pseudogene pseudo - - - - 20120318 -9606 100422149 LOC100422149 - - - 11 - olfactory receptor, family 51, subfamily G, member 2 pseudogene pseudo - - - - 20120318 -9606 100422150 LOC100422150 - - - 11 - olfactory receptor, family 52, subfamily K, member 1 pseudogene pseudo - - - - 20120318 -9606 100422151 LOC100422151 - - - 11 - olfactory receptor, family 51, subfamily A, member 7 pseudogene pseudo - - - - 20120318 -9606 100422152 LOC100422152 - - - 11 - olfactory receptor, family 51, subfamily L, member 1 pseudogene pseudo - - - - 20120318 -9606 100422157 LOC100422157 - - - 11 - olfactory receptor, family 52, subfamily J, member 3 pseudogene pseudo - - - - 20120318 -9606 100422158 LOC100422158 - - - 11 - olfactory receptor, family 52, subfamily B, member 4 pseudogene pseudo - - - - 20120318 -9606 100422159 LOC100422159 - - - 11 - olfactory receptor, family 52, subfamily N, member 2 pseudogene pseudo - - - - 20120318 -9606 100422160 LOC100422160 - - - 11 - olfactory receptor, family 56, subfamily B, member 4 pseudogene pseudo - - - - 20120318 -9606 100422161 LOC100422161 - - - 11 - olfactory receptor, family 52, subfamily N, member 2 pseudogene pseudo - - - - 20120318 -9606 100422162 LOC100422162 - - - 11 - olfactory receptor, family 52, subfamily E, member 4 pseudogene pseudo - - - - 20120318 -9606 100422163 LOC100422163 - - - 11 - olfactory receptor, family 52, subfamily E, member 4 pseudogene pseudo - - - - 20120318 -9606 100422165 LOC100422165 - - - 11 - olfactory receptor, family 4, subfamily A, member 15 pseudogene pseudo - - - - 20120318 -9606 100422166 LOC100422166 - - - 11 - olfactory receptor, family 4, subfamily A, member 16 pseudogene pseudo - - - - 20120318 -9606 100422168 LOC100422168 - - - 11 - olfactory receptor, family 4, subfamily C, member 46 pseudogene pseudo - - - - 20120318 -9606 100422170 LOC100422170 - - - 11 - olfactory receptor, family 4, subfamily A, member 16 pseudogene pseudo - - - - 20120318 -9606 100422171 LOC100422171 - - - 11 - olfactory receptor, family 4, subfamily A, member 15 pseudogene pseudo - - - - 20120318 -9606 100422173 LOC100422173 - - - 11 - olfactory receptor, family 5, subfamily D, member 13 pseudogene pseudo - - - - 20120318 -9606 100422174 LOC100422174 - - - 11 - olfactory receptor, family 5, subfamily AK, member 2 pseudogene pseudo - - - - 20120318 -9606 100422176 LOC100422176 - - - 11 - olfactory receptor, family 4, subfamily D, member 11 pseudogene pseudo - - - - 20120318 -9606 100422177 LOC100422177 - - - 11 - olfactory receptor, family 10, subfamily Q, member 1 pseudogene pseudo - - - - 20120318 -9606 100422178 LOC100422178 - - - 11 - olfactory receptor, family 10, subfamily Q, member 1 pseudogene pseudo - - - - 20120318 -9606 100422179 LOC100422179 - - - 5 - potassium channel tetramerisation domain containing 9 pseudogene pseudo - - - - 20121230 -9606 100422181 LOC100422181 - - - 13 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422182 LOC100422182 - - - 13 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422185 LOC100422185 - - - 21 - olfactory receptor, family 4, subfamily K, member 15 pseudogene pseudo - - - - 20120318 -9606 100422186 LOC100422186 - - - 21 - olfactory receptor, family 7, subfamily E, member 24 pseudogene pseudo - - - - 20120318 -9606 100422188 LOC100422188 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide B11 pseudogene pseudo - - - - 20121230 -9606 100422189 LOC100422189 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide B17 pseudogene pseudo - - - - 20121230 -9606 100422190 LOC100422190 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide B7 pseudogene pseudo - - - - 20121230 -9606 100422194 LOC100422194 - - - 15 - ATP-binding cassette, sub-family G (WHITE), member 2 pseudogene pseudo - - - - 20121230 -9606 100422195 LOC100422195 - - - 15 - olfactory receptor, family 4, subfamily F, member 21 pseudogene pseudo - - - - 20120318 -9606 100422196 LOC100422196 - - - 15 - olfactory receptor, family 4, subfamily F, member 15 pseudogene pseudo - - - - 20120318 -9606 100422200 EIF3EP4 - - HGNC:37921 3 - eukaryotic translation initiation factor 3, subunit E pseudogene 4 pseudo EIF3EP4 eukaryotic translation initiation factor 3, subunit E pseudogene 4 O - 20121230 -9606 100422204 LOC100422204 - - - 8 - regulatory solute carrier protein, family 1, member 1 pseudogene pseudo - - - - 20121230 -9606 100422209 LOC100422209 - - - X - phenazine biosynthesis-like protein domain containing pseudogene pseudo - - - - 20121230 -9606 100422212 LOC100422212 - - - 1 - eukaryotic translation initiation factor 3, subunit J pseudogene pseudo - - - - 20121230 -9606 100422213 LOC100422213 - - - 1 - guanine nucleotide binding protein-like 3 (nucleolar) pseudogene pseudo - - - - 20121230 -9606 100422216 LOC100422216 - - - 14 - olfactory receptor, family 10, subfamily G, member 2 pseudogene pseudo - - - - 20120318 -9606 100422225 LOC100422225 - - - 14 - ATP-binding cassette, sub-family G (WHITE), member 2 pseudogene pseudo - - - - 20121230 -9606 100422227 LOC100422227 - - - 2 - SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422229 MAPRE1P3 - - HGNC:37762 2 - MAPRE1 pseudogene 3 pseudo MAPRE1P3 MAPRE1 pseudogene 3 O - 20121230 -9606 100422230 LOC100422230 - - - 9 - potassium channel tetramerisation domain containing 10 pseudogene pseudo - - - - 20121230 -9606 100422232 LOC100422232 - - - 9 - parkinson protein 7 pseudogene pseudo - - - - 20121230 -9606 100422233 LOC100422233 - - - 9 - iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422235 CYP4F36P - - HGNC:42407 19 - cytochrome P450, family 4, subfamily F, polypeptide 36, pseudogene pseudo CYP4F36P cytochrome P450, family 4, subfamily F, polypeptide 36, pseudogene O - 20121230 -9606 100422238 CYP4F23P - - HGNC:39944 19 - cytochrome P450, family 4, subfamily F, polypeptide 23, pseudogene pseudo CYP4F23P cytochrome P450, family 4, subfamily F, polypeptide 23, pseudogene O - 20121230 -9606 100422241 LOC100422241 - - - 11 - transforming, acidic coiled-coil containing protein 3 pseudogene pseudo - - - - 20121230 -9606 100422242 LOC100422242 - - - 11 - potassium channel tetramerisation domain containing 9 pseudogene pseudo - - - - 20121230 -9606 100422243 LOC100422243 - - - 5 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422247 CYP4F34P - - HGNC:39953 13 - cytochrome P450, family 4, subfamily F, polypeptide 34, pseudogene pseudo CYP4F34P cytochrome P450, family 4, subfamily F, polypeptide 34, pseudogene O - 20121230 -9606 100422249 LOC100422249 - - - 4 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422250 LOC100422250 - - - 4 - SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422252 LOC100422252 - - - 15 - olfactory receptor, family 11, subfamily H, member 12 pseudogene pseudo - - - - 20120318 -9606 100422253 LOC100422253 - - - 15 - olfactory receptor, family 11, subfamily H, member 12 pseudogene pseudo - - - - 20120318 -9606 100422254 LOC100422254 - - - 10 - estrogen receptor binding site associated, antigen, 9 pseudogene pseudo - - - - 20121230 -9606 100422256 NPM1P23 - - HGNC:44513 3 - nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 23 pseudo NPM1P23 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 23 O - 20121230 -9606 100422259 LOC100422259 - - - 3 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422261 LOC100422261 - - - 6 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422263 LOC100422263 - - - 6 - serine palmitoyltransferase, long chain base subunit 2 pseudogene pseudo - - - - 20121230 -9606 100422264 CYP51P3 - - HGNC:41991 6 - cytochrome P450, family 51, pseudogene 3 pseudo CYP51P3 cytochrome P450, family 51, pseudogene 3 O - 20121230 -9606 100422265 LOC100422265 - - - 8 - SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422267 LOC100422267 - - - 8 - coagulation factor III (thromboplastin, tissue factor) pseudogene pseudo - - - - 20121230 -9606 100422268 LOC100422268 - - - 8 - BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422270 LOC100422270 - - - 8 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422271 LOC100422271 - - - 8 - proteasome (prosome, macropain) 26S subunit, ATPase, 2 pseudogene pseudo - - - - 20121230 -9606 100422272 LOC100422272 - - - 8 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422273 KCTD9P1 - HsT38306 HGNC:21428 17 17p11.2 potassium channel tetramerisation domain containing 9 pseudogene 1 pseudo KCTD9P1 potassium channel tetramerisation domain containing 9 pseudogene 1 O - 20121230 -9606 100422274 LOC100422274 - - - 18 - transforming, acidic coiled-coil containing protein 3 pseudogene pseudo - - - - 20121230 -9606 100422275 LOC100422275 - - - 16 - proteasome (prosome, macropain) subunit, beta type, 5 pseudogene pseudo - - - - 20121230 -9606 100422284 LOC100422284 - - - X - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422285 LOC100422285 - - - X - cleavage and polyadenylation specific factor 1, 160kDa pseudogene pseudo - - - - 20121230 -9606 100422286 LOC100422286 - - - X - proteasome (prosome, macropain) subunit, alpha type, 1 pseudogene pseudo - - - - 20121230 -9606 100422287 LOC100422287 - - - 1 - proteasome (prosome, macropain) subunit, alpha type, 3 pseudogene pseudo - - - - 20121230 -9606 100422288 LOC100422288 - - - 1 - cytochrome P450, family 4, subfamily A, polypeptide 11 pseudogene pseudo - - - - 20121230 -9606 100422289 LOC100422289 - - - 14 - proteasome (prosome, macropain) subunit, beta type, 7 pseudogene pseudo - - - - 20121230 -9606 100422292 LOC100422292 - - - 22 - ral guanine nucleotide dissociation stimulator-like 4 pseudogene pseudo - - - - 20121230 -9606 100422294 LOC100422294 - - - 2 - capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo - - - - 20121230 -9606 100422296 LOC100422296 - - - 12 - parkinson protein 7 pseudogene pseudo - - - - 20121230 -9606 100422298 LOC100422298 - - - 19 - iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422299 LOC100422299 - - - 11 - complement component 1, q subcomponent binding protein pseudogene pseudo - - - - 20121230 -9606 100422300 LOC100422300 - - - 11 - pyridine nucleotide-disulphide oxidoreductase domain 1 pseudogene pseudo - - - - 20121230 -9606 100422305 PSMC1P13 - - HGNC:39788 13 - proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 13 pseudo PSMC1P13 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 13 O - 20121230 -9606 100422309 LOC100422309 - - - 15 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422310 LOC100422310 - - - 15 - complement component 1, q subcomponent binding protein pseudogene pseudo - - - - 20121230 -9606 100422312 LOC100422312 - - - 10 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422313 LOC100422313 - - - 10 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422315 LOC100422315 - - - 6 - poly(A) binding protein, cytoplasmic 4 (inducible form) pseudogene pseudo - - - - 20121230 -9606 100422316 LOC100422316 - - - 17 - nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene pseudo - - - - 20121230 -9606 100422317 LOC100422317 - - - 18 - proteasome (prosome, macropain) 26S subunit, ATPase, 5 pseudogene pseudo - - - - 20121230 -9606 100422319 LOC100422319 - - - 16 - iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422324 LOC100422324 - - - 7 - capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo - - - - 20121230 -9606 100422325 LOC100422325 - - - 7 - poly(A) binding protein, cytoplasmic 4 (inducible form) pseudogene pseudo - - - - 20121230 -9606 100422330 QRSL1P2 - - HGNC:43668 1 - glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 2 pseudo QRSL1P2 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 2 O - 20121230 -9606 100422334 LOC100422334 - - - 14 - general transcription factor IIH, polypeptide 3, 34kDa pseudogene pseudo - - - - 20121230 -9606 100422337 LOC100422337 - - - 2 - guanine nucleotide binding protein (G protein), alpha 13 pseudogene pseudo - - - - 20121230 -9606 100422338 LOC100422338 - - - 2 - GTPase activating protein (SH3 domain) binding protein 1 pseudogene pseudo - - - - 20121230 -9606 100422339 LOC100422339 - - - 2 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121230 -9606 100422340 LOC100422340 - - - 9 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121209 -9606 100422341 LOC100422341 - - - 9 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121209 -9606 100422342 LOC100422342 - - - 9 - phosphatidylinositol glycan anchor biosynthesis, class U pseudogene pseudo - - - - 20121230 -9606 100422343 UPF3AP3 - - HGNC:38395 9 - UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 3 pseudo UPF3AP3 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 3 O - 20121230 -9606 100422344 LOC100422344 - - - 9 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121230 -9606 100422345 LOC100422345 - - - 9 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121230 -9606 100422346 LOC100422346 - - - 9 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121209 -9606 100422347 LOC100422347 - - - 9 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121209 -9606 100422348 LOC100422348 - - - 9 - short chain dehydrogenase/reductase family 42E, member 1 pseudogene pseudo - - - - 20121209 -9606 100422349 LOC100422349 - - - 9 - phosphatidylinositol glycan anchor biosynthesis, class F pseudogene pseudo - - - - 20121230 -9606 100422352 LOC100422352 - - - 12 - transmembrane and tetratricopeptide repeat containing 1 pseudogene pseudo - - - - 20121230 -9606 100422354 CHCHD3P2 - - HGNC:44698 12 - coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 2 pseudo CHCHD3P2 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 2 O - 20121230 -9606 100422363 LOC100422363 - - - 10 - budding uninhibited by benzimidazoles 1 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100422368 LOC100422368 - - - X - UPF3 regulator of nonsense transcripts homolog B (yeast) pseudogene pseudo - - - - 20121230 -9606 100422369 LOC100422369 - - - X - par-6 partitioning defective 6 homolog beta (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100422371 RIMKLBP2 - - HGNC:39163 1 - ribosomal modification protein rimK-like family member B pseudogene 2 pseudo RIMKLBP2 ribosomal modification protein rimK-like family member B pseudogene 2 O - 20121230 -9606 100422372 LOC100422372 - - - 1 - nudE nuclear distribution E homolog 1 (A. nidulans) pseudogene pseudo - - - - 20121230 -9606 100422374 QRSL1P3 - - HGNC:43669 14 - glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 3 pseudo QRSL1P3 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 3 O - 20121230 -9606 100422375 LOC100422375 - - - 22 - phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha pseudogene pseudo - - - - 20121230 -9606 100422376 LOC100422376 - - - 9 - ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 pseudogene pseudo - - - - 20121230 -9606 100422381 PPP1R10P1 - PPP1R10P HGNC:16325 11 11q24.3 protein phosphatase 1, regulatory subunit 10 pseudogene 1 pseudo PPP1R10P1 protein phosphatase 1, regulatory subunit 10 pseudogene 1 O - 20121230 -9606 100422382 LOC100422382 - - - 11 - CCR4 carbon catabolite repression 4-like (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422384 LOC100422384 - - - 10 - polymerase (RNA) III (DNA directed) polypeptide D, 44kDa pseudogene pseudo - - - - 20121230 -9606 100422385 LOC100422385 - - - 3 - DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422386 ADAD1P1 - - HGNC:44550 3 - adenosine deaminase domain containing 1 (testis-specific) pseudogene 1 pseudo ADAD1P1 adenosine deaminase domain containing 1 (testis-specific) pseudogene 1 O - 20121230 -9606 100422391 LOC100422391 - - - 18 - polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene pseudo - - - - 20121230 -9606 100422394 LOC100422394 - - - 1 - NACC family member 2, BEN and BTB (POZ) domain containing pseudogene pseudo - - - - 20121209 -9606 100422395 LOC100422395 - - - 14 - polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene pseudo - - - - 20121230 -9606 100422398 LOC100422398 - - - 11 - protein kinase, cAMP-dependent, regulatory, type II, beta pseudogene pseudo - - - - 20121230 -9606 100422399 LOC100422399 - - - 11 - protein kinase, cAMP-dependent, regulatory, type II, beta pseudogene pseudo - - - - 20121230 -9606 100422402 LOC100422402 - - - 4 - RAS guanyl releasing protein 2 (calcium and DAG-regulated) pseudogene pseudo - - - - 20121230 -9606 100422407 ADAD1P2 - - HGNC:44552 18 - adenosine deaminase domain containing 1 (testis-specific) pseudogene 2 pseudo ADAD1P2 adenosine deaminase domain containing 1 (testis-specific) pseudogene 2 O - 20121230 -9606 100422408 LOC100422408 - - - X - LanC lantibiotic synthetase component C-like 3 (bacterial) pseudogene pseudo - - - - 20121230 -9606 100422411 PSMD8P1 - - HGNC:34013 1 - proteasome 26S subunit, non-ATPase, 8 pseudogene 1 pseudo PSMD8P1 proteasome 26S subunit, non-ATPase, 8 pseudogene 1 O - 20121230 -9606 100422413 LOC100422413 - - - 1 - proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 pseudogene pseudo - - - - 20121230 -9606 100422414 LOC100422414 - - - 1 - proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 pseudogene pseudo - - - - 20121230 -9606 100422416 LOC100422416 - - - 22 - ADAM metallopeptidase with thrombospondin type 1 motif, 7 pseudogene pseudo - - - - 20121230 -9606 100422417 LOC100422417 - - - 2 - solute carrier family 6 (amino acid transporter), member 14 pseudogene pseudo - - - - 20121230 -9606 100422418 LOC100422418 - - - 2 - proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 pseudogene pseudo - - - - 20121230 -9606 100422426 LOC100422426 - - - 3 - CASP2 and RIPK1 domain containing adaptor with death domain pseudogene pseudo - - - - 20121230 -9606 100422429 LOC100422429 - - - 6 - N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene pseudo - - - - 20121230 -9606 100422431 LOC100422431 - - - X - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa pseudogene pseudo - - - - 20121230 -9606 100422432 LOC100422432 - - - X - solute carrier family 6 (amino acid transporter), member 14 pseudogene pseudo - - - - 20121230 -9606 100422434 LOC100422434 - - - 1 - complement component (3b/4b) receptor 1 (Knops blood group) pseudogene pseudo - - - - 20121230 -9606 100422437 LOC100422437 - - - 2 - myosin, light chain 6B, alkali, smooth muscle and non-muscle pseudogene pseudo - - - - 20121230 -9606 100422438 LOC100422438 - - - 12 - mitogen-activated protein kinase-activated protein kinase 2 pseudogene pseudo - - - - 20121230 -9606 100422440 LOC100422440 - - - 11 - general transcription factor IIE, polypeptide 2, beta 34kDa pseudogene pseudo - - - - 20121230 -9606 100422441 LOC100422441 - - - 5 - heat shock protein 90kDa alpha (cytosolic), class B member 1 pseudogene pseudo - - - - 20121230 -9606 100422445 NUDT19P5 - - HGNC:43589 4 - nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 5 pseudo NUDT19P5 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 5 O - 20121230 -9606 100422449 LOC100422449 - - - 6 - TIA1 cytotoxic granule-associated RNA binding protein-like 1 pseudogene pseudo - - - - 20121230 -9606 100422450 NUDT19P3 - - HGNC:43587 6 - nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 3 pseudo NUDT19P3 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 3 O - 20121230 -9606 100422452 NUDT19P4 - - HGNC:43588 6 - nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 4 pseudo NUDT19P4 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 4 O - 20121230 -9606 100422453 LOC100422453 - - - 6 - polymerase (DNA directed), delta 1, catalytic subunit 125kDa pseudogene pseudo - - - - 20121230 -9606 100422456 LOC100422456 - - - 7 - v-rel reticuloendotheliosis viral oncogene homolog A (avian) pseudogene pseudo - - - - 20121230 -9606 100422458 NUDT19P2 - - HGNC:43586 X - nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 2 pseudo NUDT19P2 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 2 O - 20121230 -9606 100422463 LOC100422463 - - - 12 - calcium channel, voltage-dependent, L type, alpha 1C subunit pseudogene pseudo - - - - 20121230 -9606 100422467 NUDT21P1 - - HGNC:39461 13 - nudix (nucleoside diphosphate linked moiety X)-type motif 21 pseudogene 1 pseudo NUDT21P1 nudix (nucleoside diphosphate linked moiety X)-type motif 21 pseudogene 1 O - 20121230 -9606 100422469 LOC100422469 - - - X - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 pseudogene pseudo - - - - 20121230 -9606 100422471 LOC100422471 - - - X - solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 pseudogene pseudo - - - - 20121230 -9606 100422473 LOC100422473 - - - 2 - translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100422478 LOC100422478 - - - 17 - potassium inwardly-rectifying channel, subfamily J, member 12 pseudogene pseudo - - - - 20121230 -9606 100422479 LOC100422479 - - - 16 - integrin, alpha X (complement component 3 receptor 4 subunit) pseudogene pseudo - - - - 20121230 -9606 100422486 KRR1P1 - - HGNC:39580 13 - KRR1, small subunit (SSU) processome component, homolog (yeast) pseudogene 1 pseudo KRR1P1 KRR1, small subunit (SSU) processome component, homolog (yeast) pseudogene 1 O - 20121230 -9606 100422490 LOC100422490 - - - 15 - UTP6, small subunit (SSU) processome component, homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100422491 LOC100422491 - - - 15 - amyloid beta (A4) precursor protein-binding, family A, member 2 pseudogene pseudo - - - - 20121209 -9606 100422492 LOC100422492 - - - 15 - amyloid beta (A4) precursor protein-binding, family A, member 2 pseudogene pseudo - - - - 20121230 -9606 100422493 LOC100422493 - - - 14 - required for meiotic nuclear division 1 homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422495 LOC100422495 - - - 8 - protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) pseudogene pseudo - - - - 20121230 -9606 100422496 PRPF19P - HsT1682|PRP19P HGNC:23182 18 - PRP19 pre-mRNA processing factor 19 homolog (S. cerevisiae) pseudogene pseudo PRPF19P PRP19 pre-mRNA processing factor 19 homolog (S. cerevisiae) pseudogene O - 20121230 -9606 100422497 LOC100422497 - - - 18 - UTP18, small subunit (SSU) processome component, homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100422500 LOC100422500 - - - 9 - transient receptor potential cation channel, subfamily C, member 6 pseudogene pseudo - - - - 20121230 -9606 100422501 LOC100422501 - - - 9 - COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) pseudogene pseudo - - - - 20121230 -9606 100422502 LOC100422502 - - - 5 - transient receptor potential cation channel, subfamily C, member 6 pseudogene pseudo - - - - 20121230 -9606 100422505 ATP8A2P1 - - HGNC:39662 10 - ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 1 pseudo ATP8A2P1 ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 1 O - 20121230 -9606 100422510 LOC100422510 - - - 14 - solute carrier family 12 (sodium/chloride transporters), member 3 pseudogene pseudo - - - - 20121230 -9606 100422513 LOC100422513 - - - 2 - pleckstrin homology domain containing, family B (evectins) member 2 pseudogene pseudo - - - - 20121230 -9606 100422514 ATP5F1P4 - - HGNC:39745 2 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 4 pseudo ATP5F1P4 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 4 O - 20121230 -9606 100422517 LOC100422517 - - - 20 - Bartter syndrome, infantile, with sensorineural deafness (Barttin) pseudogene pseudo - - - - 20121230 -9606 100422519 LOC100422519 - - - 7 - pleckstrin homology domain containing, family B (evectins) member 2 pseudogene pseudo - - - - 20121230 -9606 100422523 ATP5F1P1 - - HGNC:39742 13 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 1 pseudo ATP5F1P1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 1 O - 20121230 -9606 100422524 LOC100422524 - - - 10 - solute carrier family 4, sodium bicarbonate cotransporter, member 8 pseudogene pseudo - - - - 20121230 -9606 100422526 LOC100422526 - - - 1 - proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) pseudogene pseudo - - - - 20121230 -9606 100422527 LOC100422527 - - - 1 - solute carrier family 4 (anion exchanger), member 1, adaptor protein pseudogene pseudo - - - - 20121230 -9606 100422528 LOC100422528 - - - 14 - pleckstrin homology domain containing, family B (evectins) member 2 pseudogene pseudo - - - - 20121230 -9606 100422529 LOC100422529 - - - 14 - pleckstrin homology domain containing, family B (evectins) member 2 pseudogene pseudo - - - - 20121209 -9606 100422530 LOC100422530 - - - 22 - pleckstrin homology domain containing, family B (evectins) member 2 pseudogene pseudo - - - - 20121209 -9606 100422531 FCF1P8 - - HGNC:44620 4 - FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 8 pseudo FCF1P8 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 8 O - 20121230 -9606 100422532 NDUFAF4P3 - - HGNC:44542 3 - NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 3 pseudo NDUFAF4P3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 3 O - 20121230 -9606 100422533 FCF1P1 - - HGNC:44613 7 - FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 1 pseudo FCF1P1 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 1 O - 20121230 -9606 100422535 FCF1P6 - - HGNC:44618 1 - FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 6 pseudo FCF1P6 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 6 O - 20121230 -9606 100422536 FCF1P7 - - HGNC:44619 1 - FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 7 pseudo FCF1P7 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 7 O - 20121230 -9606 100422537 LOC100422537 - - - 1 - signal sequence receptor, gamma (translocon-associated protein gamma) pseudogene pseudo - - - - 20121230 -9606 100422538 LOC100422538 - - - 9 - recombination signal binding protein for immunoglobulin kappa J region pseudogene pseudo - - - - 20121230 -9606 100422540 VTI1BP4 - - HGNC:43730 9 - vesicle transport through interaction with t-SNAREs 1B pseudogene 4 pseudo VTI1BP4 vesicle transport through interaction with t-SNAREs 1B pseudogene 4 O - 20121230 -9606 100422545 HIRAP1 - - HGNC:44916 10 - HIR histone cell cycle regulation defective homolog A pseudogene 1 pseudo HIRAP1 HIR histone cell cycle regulation defective homolog A pseudogene 1 O - 20121230 -9606 100422546 LOC100422546 - - - 8 - X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene pseudo - - - - 20121230 -9606 100422547 LOC100422547 - - - 7 - solute carrier family 16, member 1 (monocarboxylic acid transporter 1) pseudogene pseudo - - - - 20121230 -9606 100422548 LOC100422548 - - - 1 - solute carrier family 5 (low affinity glucose cotransporter), member 4 pseudogene pseudo - - - - 20121230 -9606 100422549 LOC100422549 - - - 1 - solute carrier family 5 (low affinity glucose cotransporter), member 4 pseudogene pseudo - - - - 20121230 -9606 100422550 LOC100422550 - - - 11 - solute carrier family 5 (low affinity glucose cotransporter), member 4 pseudogene pseudo - - - - 20121230 -9606 100422556 LOC100422556 - - - 15 - Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422558 LOC100422558 - - - 16 - smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100422559 LOC100422559 - - - 2 - guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 pseudogene pseudo - - - - 20121230 -9606 100422561 LOC100422561 - - - 5 5q21.3 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 pseudogene pseudo - - - uncharacterized protein LOC643534 20121230 -9606 100422562 LOC100422562 - - - 4 - guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 pseudogene pseudo - - - - 20121230 -9606 100422564 LOC100422564 - - - 6 - glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) pseudogene pseudo - - - - 20121230 -9606 100422580 LOC100422580 - - - 2 - transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) pseudogene pseudo - - - - 20121230 -9606 100422581 LOC100422581 - - - 9 - DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) pseudogene pseudo - - - - 20121230 -9606 100422582 LOC100422582 - - - 12 - transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) pseudogene pseudo - - - - 20121230 -9606 100422587 LOC100422587 - - - 6 - platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) pseudogene pseudo - - - - 20121230 -9606 100422588 LOC100422588 - - - X - mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase pseudogene pseudo - - - - 20121230 -9606 100422589 LOC100422589 - - - X - mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase pseudogene pseudo - - - - 20121230 -9606 100422591 LOC100422591 - - - 2 - succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa pseudogene pseudo - - - - 20121230 -9606 100422593 LOC100422593 - - - 5 - DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422595 PCMTD1P3 - - HGNC:38806 7 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 3 pseudo PCMTD1P3 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 3 O - 20121230 -9606 100422598 LOC100422598 - - - 11 - succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa pseudogene pseudo - - - - 20121230 -9606 100422600 SDHCP1 - - HGNC:31734 18 - succinate dehydrogenase complex, subunit C pseudogene 1 pseudo SDHCP1 succinate dehydrogenase complex, subunit C pseudogene 1 O - 20121230 -9606 100422602 ST13P14 - - HGNC:38849 3 - suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 14 pseudo ST13P14 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 14 O - 20121230 -9606 100422603 ST13P15 - - HGNC:38850 3 - suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 15 pseudo ST13P15 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 15 O - 20121230 -9606 100422604 LOC100422604 - - - 3 - leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 pseudogene pseudo - - - - 20121230 -9606 100422605 ST13P16 - - HGNC:38851 6 - suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 16 pseudo ST13P16 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 16 O - 20121230 -9606 100422606 SLC25A3P3 - - HGNC:43785 18 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene pseudo SLC25A3P3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene O - 20121230 -9606 100422608 LOC100422608 - - - 1 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 pseudogene pseudo - - - - 20121209 -9606 100422610 LOC100422610 - - - 19 - solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene pseudo - - - - 20121230 -9606 100422611 LOC100422611 - - - 19 - leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 pseudogene pseudo - - - - 20121230 -9606 100422614 LOC100422614 - - - 8 - solute carrier family 7 (anionic amino acid transporter), member 13 pseudogene pseudo - - - - 20121230 -9606 100422622 LOC100422622 - - - 12 - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa pseudogene pseudo - - - - 20121230 -9606 100422623 LOC100422623 - - - 19 - carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) pseudogene pseudo - - - - 20121230 -9606 100422624 SLC25A15P1 - SLC25A15P|SLC25A15PY1 HGNC:18497 Y - solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 1 pseudo SLC25A15P1 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 1 O - 20121230 -9606 100422625 GOT2P5 - GOT2Y HGNC:38439 Y - glutamic-oxaloacetic transaminase 2 pseudogene 5 pseudo GOT2P5 glutamic-oxaloacetic transaminase 2 pseudogene 5 O - 20121230 -9606 100422627 LOC100422627 - - - 4 - TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa pseudogene pseudo - - - - 20121230 -9606 100422628 LOC100422628 - - - X - glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) pseudogene pseudo - - - - 20121230 -9606 100422633 LOC100422633 - - - 19 - asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100422634 CASP1P3 - - HGNC:43777 11 - caspase 1, apoptosis-related cysteine peptidase pseudogene 3 pseudo CASP1P3 caspase 1, apoptosis-related cysteine peptidase pseudogene 3 O - 20121230 -9606 100422635 SLC25A15P3 - - HGNC:39844 13 - solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 3 pseudo SLC25A15P3 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 3 O - 20121230 -9606 100422636 SLC25A15P4 - - HGNC:39845 21 - solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 4 pseudo SLC25A15P4 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 4 O - 20121230 -9606 100422637 LOC100422637 - - - 4 - myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) pseudogene pseudo - - - - 20121230 -9606 100422638 LOC100422638 - - - 4 - myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) pseudogene pseudo - - - - 20121230 -9606 100422639 LOC100422639 - - - 4 - myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) pseudogene pseudo - - - - 20121230 -9606 100422640 LOC100422640 - - - 4 - 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase pseudogene pseudo - - - - 20121230 -9606 100422641 LOC100422641 - - - 14 - STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422642 SLC25A15P5 - - HGNC:39846 22 - solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 5 pseudo SLC25A15P5 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 5 O - 20121230 -9606 100422644 LOC100422644 - - - X - serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 pseudogene pseudo - - - - 20121230 -9606 100422645 LOC100422645 - - - 15 - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 pseudogene pseudo - - - - 20121230 -9606 100422646 LOC100422646 - - - 6 - 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like pseudogene pseudo - - - - 20121230 -9606 100422656 LOC100422656 - - - 17 - eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) pseudogene pseudo - - - - 20121230 -9606 100422657 RAC1P6 - - HGNC:42006 7 - ras-related C3 botulinum toxin substrate 1 pseudogene 6 pseudo RAC1P6 ras-related C3 botulinum toxin substrate 1 pseudogene 6 O - 20121230 -9606 100422658 LOC100422658 - - - 7 - ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) pseudogene pseudo - - - - 20121230 -9606 100422666 LOC100422666 - - - 11 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide pseudogene pseudo - - - - 20121230 -9606 100422669 LOC100422669 - - - 15 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide pseudogene pseudo - - - - 20121230 -9606 100422671 LOC100422671 - - - 6 - cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100422674 YWHAQP7 - - HGNC:37686 12 - YWHAQ pseudogene 7 pseudo YWHAQP7 YWHAQ pseudogene 7 O - 20121230 -9606 100422685 LOC100422685 - - - X - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene pseudo - - - - 20121230 -9606 100422686 SLC25A6P3 - - HGNC:43852 1 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 3 pseudo SLC25A6P3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 3 O - 20121230 -9606 100422687 LOC100422687 - - - 5 - pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 pseudogene pseudo - - - - 20121230 -9606 100422690 SLC25A6P4 - - HGNC:43853 18 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 4 pseudo SLC25A6P4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 4 O - 20121230 -9606 100422691 ITGB1P1 - FNRBL|ITGB1L HGNC:3781 19 19p integrin beta 1 pseudogene 1 pseudo ITGB1P1 integrin beta 1 pseudogene 1 O - 20121209 -9606 100422693 LOC100422693 - - - 17 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) pseudogene pseudo - - - - 20121230 -9606 100422694 LOC100422694 - - - 1 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) pseudogene pseudo - - - - 20121230 -9606 100422695 LOC100422695 - - - 7 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo - - - - 20121230 -9606 100422696 LOC100422696 - - - 7 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo - - - - 20121230 -9606 100422710 LOC100422710 - - - 2 - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 pseudogene pseudo - - - - 20121230 -9606 100422711 PRKRIRP2 - - HGNC:39566 3 - protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 2 pseudo PRKRIRP2 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 2 O - 20121230 -9606 100422712 PRKRIRP7 - - HGNC:39574 8 - protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 7 pseudo PRKRIRP7 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 7 O - 20121230 -9606 100422713 LOC100422713 - - - 16 - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 pseudogene pseudo - - - - 20121230 -9606 100422715 PRKRIRP10 - - HGNC:39741 13 - protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 10 pseudo PRKRIRP10 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 10 O - 20121230 -9606 100422716 LOC100422716 - - - 2 - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 pseudogene pseudo - - - - 20121230 -9606 100422717 LOC100422717 - - - 17 - pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 pseudogene pseudo - - - - 20121230 -9606 100422730 LOC100422730 - - - 5 - sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A pseudogene pseudo - - - - 20121230 -9606 100422737 LOC100422737 - - - 6 - uncharacterized LOC100422737 miscRNA - - - - 20121230 -9606 100422781 LOC100422781 - - - - - uncharacterized LOC100422781 miscRNA - - - - 20120622 -9606 100422821 MIR1273C - - HGNC:38173|miRBase:MI0014171 6 - microRNA 1273c miscRNA MIR1273C microRNA 1273c O - 20121230 -9606 100422823 MIR4300 - - HGNC:38184|miRBase:MI0015831 11 - microRNA 4300 miscRNA MIR4300 microRNA 4300 O - 20121230 -9606 100422824 MIR3128 - - HGNC:38188|miRBase:MI0014145 2 - microRNA 3128 miscRNA MIR3128 microRNA 3128 O - 20121230 -9606 100422825 MIR3160-2 - - HGNC:38192|miRBase:MI0014190 11 - microRNA 3160-2 miscRNA MIR3160-2 microRNA 3160-2 O - 20121230 -9606 100422826 MIR4274 - - HGNC:38194|miRBase:MI0015884 4 - microRNA 4274 miscRNA MIR4274 microRNA 4274 O - 20121209 -9606 100422827 MIR3160-1 - - HGNC:38197|miRBase:MI0014189 11 - microRNA 3160-1 miscRNA MIR3160-1 microRNA 3160-1 O - 20121230 -9606 100422828 MIR4287 - - HGNC:38208|miRBase:MI0015895 8 - microRNA 4287 miscRNA MIR4287 microRNA 4287 O - 20121230 -9606 100422829 MIR4319 - - HGNC:38212|miRBase:MI0015848 18 - microRNA 4319 miscRNA MIR4319 microRNA 4319 O - 20121230 -9606 100422830 MIR3171 - - HGNC:38216|miRBase:MI0014202 14 - microRNA 3171 miscRNA MIR3171 microRNA 3171 O - 20120318 -9606 100422831 MIR1302-9 - - HGNC:38218|miRBase:MI0015978 9 - microRNA 1302-9 miscRNA MIR1302-9 microRNA 1302-9 O - 20121209 -9606 100422832 MIR3191 - - HGNC:38222|miRBase:MI0014236 19 - microRNA 3191 miscRNA MIR3191 microRNA 3191 O - 20121230 -9606 100422833 MIR3188 - - HGNC:38226|miRBase:MI0014232 19 - microRNA 3188 miscRNA MIR3188 microRNA 3188 O - 20121230 -9606 100422834 MIR1302-10 - - HGNC:38233|miRBase:MI0015979 15 - microRNA 1302-10 miscRNA MIR1302-10 microRNA 1302-10 O - 20121230 -9606 100422835 MIR3183 - - HGNC:38237|miRBase:MI0014225 17 - microRNA 3183 miscRNA MIR3183 microRNA 3183 O - 20121230 -9606 100422836 MIR3180-3 - - HGNC:38239|miRBase:MI0014217 16 - microRNA 3180-3 miscRNA MIR3180-3 microRNA 3180-3 O - 20121230 -9606 100422837 MIR1193 - - HGNC:38247|miRBase:MI0014205 14 - microRNA 1193 miscRNA MIR1193 microRNA 1193 O - 20121230 -9606 100422838 MIR3195 - - HGNC:38250|miRBase:MI0014240 20 - microRNA 3195 miscRNA MIR3195 microRNA 3195 O - 20120318 -9606 100422839 MIR3119-1 - - HGNC:38253|miRBase:MI0014134 1 - microRNA 3119-1 miscRNA MIR3119-1 microRNA 3119-1 O - 20121230 -9606 100422840 MIR4317 - - HGNC:38260|miRBase:MI0015850 18 - microRNA 4317 miscRNA MIR4317 microRNA 4317 O - 20121230 -9606 100422841 MIR3174 - - HGNC:38264|miRBase:MI0014208 15 - microRNA 3174 miscRNA MIR3174 microRNA 3174 O - 20121230 -9606 100422842 MIR3074 - - HGNC:38268|miRBase:MI0014181 9 - microRNA 3074 miscRNA MIR3074 microRNA 3074 O - 20121230 -9606 100422843 MIR4293 - - HGNC:38270|miRBase:MI0015826 10 - microRNA 4293 miscRNA MIR4293 microRNA 4293 O - 20121230 -9606 100422844 MIR3118-3 - - HGNC:38274|miRBase:MI0014133 1 - microRNA 3118-3 miscRNA MIR3118-3 microRNA 3118-3 O - 20121230 -9606 100422845 MIR1233-2 - - HGNC:38277|miRBase:MI0015973 15 - microRNA 1233-2 miscRNA MIR1233-2 microRNA 1233-2 O - 20121230 -9606 100422846 MIR3164 - - HGNC:38288|miRBase:MI0014194 11 - microRNA 3164 miscRNA MIR3164 microRNA 3164 O - 20121230 -9606 100422847 MIR514B - - HGNC:38292|miRBase:MI0014251 X Xq27.3 microRNA 514b miscRNA MIR514B microRNA 514b O - 20121230 -9606 100422848 MIR4283-2 - - HGNC:38296|miRBase:MI0015982 7 - microRNA 4283-2 miscRNA MIR4283-2 microRNA 4283-2 O - 20121230 -9606 100422849 MIR548T - - HGNC:38298|miRBase:MI0014164 4 - microRNA 548t miscRNA MIR548T microRNA 548t O - 20121230 -9606 100422850 MIR548V - - HGNC:38302|miRBase:MI0014174 8 - microRNA 548v miscRNA MIR548V microRNA 548v O - 20121230 -9606 100422851 MIR4316 - - HGNC:38306|miRBase:MI0015845 17 - microRNA 4316 miscRNA MIR4316 microRNA 4316 O - 20121230 -9606 100422852 MIR4259 - - HGNC:38309|miRBase:MI0015858 1 - microRNA 4259 miscRNA MIR4259 microRNA 4259 O - 20120318 -9606 100422853 MIR3182 - - HGNC:38317|miRBase:MI0014224 16 - microRNA 3182 miscRNA MIR3182 microRNA 3182 O - 20121230 -9606 100422854 MIR3187 - - HGNC:38319|miRBase:MI0014231 19 - microRNA 3187 miscRNA MIR3187 microRNA 3187 O - 20121230 -9606 100422855 MIR4301 - - HGNC:38323|miRBase:MI0015828 11 - microRNA 4301 miscRNA MIR4301 microRNA 4301 O - 20121230 -9606 100422856 MIR3123 - - HGNC:38330|miRBase:MI0014139 1 - microRNA 3123 miscRNA MIR3123 microRNA 3123 O - 20121230 -9606 100422857 MIR4318 - - HGNC:38333|miRBase:MI0015847 18 - microRNA 4318 miscRNA MIR4318 microRNA 4318 O - 20121230 -9606 100422858 MIR4285 - - HGNC:38337|miRBase:MI0015891 7 - microRNA 4285 miscRNA MIR4285 microRNA 4285 O - 20121230 -9606 100422859 MIR3136 - - HGNC:38340|miRBase:MI0014158 3 - microRNA 3136 miscRNA MIR3136 microRNA 3136 O - 20121230 -9606 100422860 MIR4292 - - HGNC:38348|miRBase:MI0015897 9 - microRNA 4292 miscRNA MIR4292 microRNA 4292 O - 20121230 -9606 100422861 MIR4306 - - HGNC:38350|miRBase:MI0015836 13 - microRNA 4306 miscRNA MIR4306 microRNA 4306 O - 20121230 -9606 100422862 MIR548S - - HGNC:38354|miRBase:MI0014141 2 - microRNA 548s miscRNA MIR548S microRNA 548s O - 20121230 -9606 100422863 MIR4265 - - HGNC:38358|miRBase:MI0015869 2 - microRNA 4265 miscRNA MIR4265 microRNA 4265 O - 20121230 -9606 100422864 MIR544B - - HGNC:38361|miRBase:MI0014159 3 - microRNA 544b miscRNA MIR544B microRNA 544b O - 20121230 -9606 100422865 MIR4320 - - HGNC:38369|miRBase:MI0015849 18 - microRNA 4320 miscRNA MIR4320 microRNA 4320 O - 20121230 -9606 100422866 MIR3115 - - HGNC:38371|miRBase:MI0014127 1 - microRNA 3115 miscRNA MIR3115 microRNA 3115 O - 20121230 -9606 100422867 MIR378C - - HGNC:38374|miRBase:MI0015825 10 - microRNA 378c miscRNA MIR378C microRNA 378c O - 20121230 -9606 100422868 MIR4270 - - HGNC:38377|miRBase:MI0015878 3 - microRNA 4270 miscRNA MIR4270 microRNA 4270 O - 20121230 -9606 100422869 MIR3152 - - HGNC:38379|miRBase:MI0014179 9 - microRNA 3152 miscRNA MIR3152 microRNA 3152 O - 20121230 -9606 100422870 MIR3180-1 - - HGNC:38382|miRBase:MI0014214 16 - microRNA 3180-1 miscRNA MIR3180-1 microRNA 3180-1 O - 20121230 -9606 100422871 MIR3117 - - HGNC:38385|miRBase:MI0014130 1 - microRNA 3117 miscRNA MIR3117 microRNA 3117 O - 20121230 -9606 100422872 MIR1244-3 - - HGNC:38390|miRBase:MI0015975 12 - microRNA 1244-3 miscRNA MIR1244-3 microRNA 1244-3 O - 20121230 -9606 100422873 MIR4297 - - HGNC:38393|miRBase:MI0015824 10 - microRNA 4297 miscRNA MIR4297 microRNA 4297 O - 20121230 -9606 100422874 MIR4279 - - HGNC:38195|miRBase:MI0015887 5 - microRNA 4279 miscRNA MIR4279 microRNA 4279 O - 20121230 -9606 100422875 MIR3192 - - HGNC:38202|miRBase:MI0014237 20 - microRNA 3192 miscRNA MIR3192 microRNA 3192 O - 20121230 -9606 100422876 MIR3148 - - HGNC:38215|miRBase:MI0014175 8 - microRNA 3148 miscRNA MIR3148 microRNA 3148 O - 20121230 -9606 100422877 MIR3202-2 - - HGNC:38228|miRBase:MI0014253 X - microRNA 3202-2 miscRNA MIR3202-2 microRNA 3202-2 O - 20121230 -9606 100422878 MIR3168 - - HGNC:38249|miRBase:MI0014199 13 - microRNA 3168 miscRNA MIR3168 microRNA 3168 O - 20121230 -9606 100422879 MIR3124 - - HGNC:38262|miRBase:MI0014140 1 - microRNA 3124 miscRNA MIR3124 microRNA 3124 O - 20121230 -9606 100422880 MIR3162 - - HGNC:38271|miRBase:MI0014192 11 - microRNA 3162 miscRNA MIR3162 microRNA 3162 O - 20121230 -9606 100422881 MIR3170 - - HGNC:38282|miRBase:MI0014201 13 - microRNA 3170 miscRNA MIR3170 microRNA 3170 O - 20121230 -9606 100422882 MIR3120 - - HGNC:38295|MIM:614722|miRBase:MI0014136 1 - microRNA 3120 miscRNA MIR3120 microRNA 3120 O - 20121230 -9606 100422883 MIR4325 - - HGNC:38304|miRBase:MI0015865 20 - microRNA 4325 miscRNA MIR4325 microRNA 4325 O - 20121230 -9606 100422884 MIR548U - - HGNC:38316|miRBase:MI0014168 6 - microRNA 548u miscRNA MIR548U microRNA 548u O - 20121230 -9606 100422885 MIR1244-2 - - HGNC:38321|miRBase:MI0015974 5 - microRNA 1244-2 miscRNA MIR1244-2 microRNA 1244-2 O - 20121230 -9606 100422886 MIR3179-2 - - HGNC:38325|miRBase:MI0014216 16 - microRNA 3179-2 miscRNA MIR3179-2 microRNA 3179-2 O - 20121209 -9606 100422887 MIR4280 - - HGNC:38334|miRBase:MI0015889 5 - microRNA 4280 miscRNA MIR4280 microRNA 4280 O - 20121230 -9606 100422888 MIR4264 - - HGNC:38338|miRBase:MI0015877 2 - microRNA 4264 miscRNA MIR4264 microRNA 4264 O - 20121230 -9606 100422889 MIR3194 - - HGNC:38346|miRBase:MI0014239 20 - microRNA 3194 miscRNA MIR3194 microRNA 3194 O - 20121230 -9606 100422890 MIR3118-5 - - HGNC:38351|miRBase:MI0014243 21 - microRNA 3118-5 miscRNA MIR3118-5 microRNA 3118-5 O - 20121209 -9606 100422891 MIR4327 - - HGNC:38355|miRBase:MI0015867 21 - microRNA 4327 miscRNA MIR4327 microRNA 4327 O - 20121230 -9606 100422892 MIR3157 - - HGNC:38172|miRBase:MI0014185 10 - microRNA 3157 miscRNA MIR3157 microRNA 3157 O - 20121230 -9606 100422893 MIR3154 - - HGNC:38176|miRBase:MI0014182 9 9q34 microRNA 3154 miscRNA MIR3154 microRNA 3154 O - 20121230 -9606 100422894 MIR4260 - - HGNC:38179|miRBase:MI0015859 1 - microRNA 4260 miscRNA MIR4260 microRNA 4260 O - 20121230 -9606 100422895 MIR4294 - - HGNC:38180|miRBase:MI0015827 10 - microRNA 4294 miscRNA MIR4294 microRNA 4294 O - 20121230 -9606 100422896 MIR3140 - - HGNC:38183|miRBase:MI0014163 4 - microRNA 3140 miscRNA MIR3140 microRNA 3140 O - 20121230 -9606 100422897 MIR4302 - - HGNC:38185|miRBase:MI0015833 12 - microRNA 4302 miscRNA MIR4302 microRNA 4302 O - 20121230 -9606 100422898 MIR4255 - - HGNC:38187|miRBase:MI0015863 1 - microRNA 4255 miscRNA MIR4255 microRNA 4255 O - 20121230 -9606 100422899 MIR3190 - - HGNC:38190|miRBase:MI0014235 19 - microRNA 3190 miscRNA MIR3190 microRNA 3190 O - 20121230 -9606 100422900 MIR3158-1 - - HGNC:38196|miRBase:MI0014186 10 - microRNA 3158-1 miscRNA MIR3158-1 microRNA 3158-1 O - 20121230 -9606 100422901 MIR3135A - MIR3135|hsa-mir-3135a HGNC:38199|miRBase:MI0014156 3 - microRNA 3135a miscRNA MIR3135A microRNA 3135a O - 20121230 -9606 100422902 MIR3116-1 - - HGNC:38200|miRBase:MI0014128 1 - microRNA 3116-1 miscRNA MIR3116-1 microRNA 3116-1 O - 20121230 -9606 100422903 MIR4288 - - HGNC:38203|miRBase:MI0015896 8 8p21 microRNA 4288 miscRNA MIR4288 microRNA 4288 O - 20121230 -9606 100422904 MIR3193 - - HGNC:38204|miRBase:MI0014238 20 - microRNA 3193 miscRNA MIR3193 microRNA 3193 O - 20121230 -9606 100422905 MIR4311 - - HGNC:38207|miRBase:MI0015841 15 - microRNA 4311 miscRNA MIR4311 microRNA 4311 O - 20121230 -9606 100422906 MIR3118-6 - - HGNC:38210|miRBase:MI0015981 15 - microRNA 3118-6 miscRNA MIR3118-6 microRNA 3118-6 O - 20121230 -9606 100422907 MIR3156-2 - - HGNC:38213|miRBase:MI0014230 18 - microRNA 3156-2 miscRNA MIR3156-2 microRNA 3156-2 O - 20121230 -9606 100422908 MIR3129 - - HGNC:38217|miRBase:MI0014146 2 - microRNA 3129 miscRNA MIR3129 microRNA 3129 O - 20121230 -9606 100422909 MIR4295 - - HGNC:38220|miRBase:MI0015822 10 - microRNA 4295 miscRNA MIR4295 microRNA 4295 O - 20121230 -9606 100422910 MIR2861 - BMND15|MIRN2861 HGNC:38221|MIM:613405|miRBase:MI0013006 9 - microRNA 2861 miscRNA MIR2861 microRNA 2861 O - 20121230 -9606 100422911 MIR500B - - HGNC:38223|miRBase:MI0015903 X Xp11.23 microRNA 500b miscRNA MIR500B microRNA 500b O - 20121230 -9606 100422912 MIR3200 - - HGNC:38227|miRBase:MI0014249 22 - microRNA 3200 miscRNA MIR3200 microRNA 3200 O - 20121230 -9606 100422913 MIR320E - - HGNC:38230|miRBase:MI0014234 19 19q13.32 microRNA 320e miscRNA MIR320E microRNA 320e O - 20121230 -9606 100422914 MIR4253 - - HGNC:38231|miRBase:MI0015860 1 - microRNA 4253 miscRNA MIR4253 microRNA 4253 O - 20121230 -9606 100422915 MIR3065 - - HGNC:38234|miRBase:MI0014228 17 - microRNA 3065 miscRNA MIR3065 microRNA 3065 O - 20121230 -9606 100422916 MIR3201 - - HGNC:38235|miRBase:MI0014250 22 - microRNA 3201 miscRNA MIR3201 microRNA 3201 O - 20121230 -9606 100422917 MIR4283-1 - - HGNC:38238|miRBase:MI0015892 7 - microRNA 4283-1 miscRNA MIR4283-1 microRNA 4283-1 O - 20121230 -9606 100422918 MIR3167 - - HGNC:38242|miRBase:MI0014198 11 - microRNA 3167 miscRNA MIR3167 microRNA 3167 O - 20121230 -9606 100422919 MIR1302-11 - - HGNC:38246|miRBase:MI0015980 19 - microRNA 1302-11 miscRNA MIR1302-11 microRNA 1302-11 O - 20121230 -9606 100422920 MIR548X - - HGNC:38248|miRBase:MI0014244 21 - microRNA 548x miscRNA MIR548X microRNA 548x O - 20121230 -9606 100422921 MIR3149 - - HGNC:38251|miRBase:MI0014176 8 - microRNA 3149 miscRNA MIR3149 microRNA 3149 O - 20120318 -9606 100422922 MIR1972-2 - - HGNC:38252|miRBase:MI0015977 16 - microRNA 1972-2 miscRNA MIR1972-2 microRNA 1972-2 O - 20121230 -9606 100422923 MIR548W - - HGNC:38255|miRBase:MI0014222 16 - microRNA 548w miscRNA MIR548W microRNA 548w O - 20121230 -9606 100422924 MIR4303 - - HGNC:38256|miRBase:MI0015834 12 - microRNA 4303 miscRNA MIR4303 microRNA 4303 O - 20121230 -9606 100422925 MIR4322 - - HGNC:38261|miRBase:MI0015851 19 - microRNA 4322 miscRNA MIR4322 microRNA 4322 O - 20121230 -9606 100422926 MIR3137 - - HGNC:38263|miRBase:MI0014160 3 - microRNA 3137 miscRNA MIR3137 microRNA 3137 O - 20121230 -9606 100422927 MIR4291 - - HGNC:38267|miRBase:MI0015900 9 - microRNA 4291 miscRNA MIR4291 microRNA 4291 O - 20121230 -9606 100422928 MIR3127 - - HGNC:38269|miRBase:MI0014144 2 - microRNA 3127 miscRNA MIR3127 microRNA 3127 O - 20121230 -9606 100422929 MIR4261 - - HGNC:38272|miRBase:MI0015868 2 - microRNA 4261 miscRNA MIR4261 microRNA 4261 O - 20121230 -9606 100422930 MIR4330 - - HGNC:38273|miRBase:MI0015902 X - microRNA 4330 miscRNA MIR4330 microRNA 4330 O - 20121230 -9606 100422931 MIR4304 - - HGNC:38276|miRBase:MI0015832 12 - microRNA 4304 miscRNA MIR4304 microRNA 4304 O - 20121230 -9606 100422932 MIR4328 - - HGNC:38280|miRBase:MI0015904 X - microRNA 4328 miscRNA MIR4328 microRNA 4328 O - 20121230 -9606 100422933 MIR378B - - HGNC:38283|miRBase:MI0014154 3 - microRNA 378b miscRNA MIR378B microRNA 378b O - 20121230 -9606 100422934 MIR3143 - - HGNC:38284|miRBase:MI0014167 6 - microRNA 3143 miscRNA MIR3143 microRNA 3143 O - 20121230 -9606 100422935 MIR3118-4 - - HGNC:38287|miRBase:MI0014207 15 - microRNA 3118-4 miscRNA MIR3118-4 microRNA 3118-4 O - 20121230 -9606 100422936 MIR3153 - - HGNC:38289|miRBase:MI0014180 9 - microRNA 3153 miscRNA MIR3153 microRNA 3153 O - 20121230 -9606 100422937 MIR4275 - - HGNC:38293|miRBase:MI0015883 4 - microRNA 4275 miscRNA MIR4275 microRNA 4275 O - 20121230 -9606 100422938 MIR3142 - - HGNC:38297|miRBase:MI0014166 5 - microRNA 3142 miscRNA MIR3142 microRNA 3142 O - 20121230 -9606 100422939 MIR3147 - - HGNC:38300|miRBase:MI0014173 7 - microRNA 3147 miscRNA MIR3147 microRNA 3147 O - 20121230 -9606 100422940 MIR4305 - - HGNC:38301|miRBase:MI0015835 13 - microRNA 4305 miscRNA MIR4305 microRNA 4305 O - 20121230 -9606 100422941 MIR4272 - - HGNC:38303|miRBase:MI0015880 3 - microRNA 4272 miscRNA MIR4272 microRNA 4272 O - 20121230 -9606 100422942 MIR3133 - - HGNC:38305|miRBase:MI0014153 2 - microRNA 3133 miscRNA MIR3133 microRNA 3133 O - 20121230 -9606 100422943 MIR3189 - - HGNC:38307|miRBase:MI0014233 19 - microRNA 3189 miscRNA MIR3189 microRNA 3189 O - 20121230 -9606 100422944 MIR3186 - - HGNC:38311|miRBase:MI0014229 17 - microRNA 3186 miscRNA MIR3186 microRNA 3186 O - 20121230 -9606 100422945 MIR4326 - - HGNC:38314|miRBase:MI0015866 20 - microRNA 4326 miscRNA MIR4326 microRNA 4326 O - 20121230 -9606 100422946 MIR3116-2 - - HGNC:38318|miRBase:MI0014129 1 - microRNA 3116-2 miscRNA MIR3116-2 microRNA 3116-2 O - 20121230 -9606 100422947 MIR3122 - - HGNC:38320|miRBase:MI0014138 1 - microRNA 3122 miscRNA MIR3122 microRNA 3122 O - 20121230 -9606 100422948 MIR4284 - - HGNC:38322|miRBase:MI0015893 7 - microRNA 4284 miscRNA MIR4284 microRNA 4284 O - 20121230 -9606 100422949 MIR3118-2 - - HGNC:38324|miRBase:MI0014132 1 - microRNA 3118-2 miscRNA MIR3118-2 microRNA 3118-2 O - 20121230 -9606 100422950 MIR3141 - - HGNC:38326|miRBase:MI0014165 5 - microRNA 3141 miscRNA MIR3141 microRNA 3141 O - 20121230 -9606 100422951 MIR3144 - - HGNC:38331|miRBase:MI0014169 6 - microRNA 3144 miscRNA MIR3144 microRNA 3144 O - 20121230 -9606 100422952 MIR4271 - - HGNC:38332|miRBase:MI0015879 3 - microRNA 4271 miscRNA MIR4271 microRNA 4271 O - 20121230 -9606 100422953 MIR3165 - - HGNC:38335|miRBase:MI0014195 11 - microRNA 3165 miscRNA MIR3165 microRNA 3165 O - 20121230 -9606 100422954 MIR4309 - - HGNC:38336|miRBase:MI0015837 14 - microRNA 4309 miscRNA MIR4309 microRNA 4309 O - 20121230 -9606 100422955 MIR4273 - - HGNC:38339|miRBase:MI0015881 3 - microRNA 4273 miscRNA MIR4273 microRNA 4273 O - 20121230 -9606 100422956 MIR3180-2 - - HGNC:38343|miRBase:MI0014215 16 - microRNA 3180-2 miscRNA MIR3180-2 microRNA 3180-2 O - 20121230 -9606 100422957 MIR3131 - - HGNC:38347|miRBase:MI0014151 2 - microRNA 3131 miscRNA MIR3131 microRNA 3131 O - 20121230 -9606 100422959 MIR4268 - - HGNC:38352|miRBase:MI0015874 2 - microRNA 4268 miscRNA MIR4268 microRNA 4268 O - 20121230 -9606 100422960 MIR3179-1 - - HGNC:38353|miRBase:MI0014213 16 - microRNA 3179-1 miscRNA MIR3179-1 microRNA 3179-1 O - 20121230 -9606 100422961 MIR4315-2 - - HGNC:38356|miRBase:MI0015983 17 - microRNA 4315-2 miscRNA MIR4315-2 microRNA 4315-2 O - 20121230 -9606 100422962 MIR4281 - - HGNC:38357|miRBase:MI0015885 5 - microRNA 4281 miscRNA MIR4281 microRNA 4281 O - 20121230 -9606 100422963 MIR4290 - - HGNC:38360|miRBase:MI0015899 9 - microRNA 4290 miscRNA MIR4290 microRNA 4290 O - 20121230 -9606 100422964 MIR3150A - MIR3150 HGNC:38362|miRBase:MI0014177 8 - microRNA 3150a miscRNA MIR3150A microRNA 3150a O - 20121230 -9606 100422965 MIR4263 - - HGNC:38365|miRBase:MI0015876 2 - microRNA 4263 miscRNA MIR4263 microRNA 4263 O - 20121230 -9606 100422966 MIR4277 - - HGNC:38367|miRBase:MI0015886 5 - microRNA 4277 miscRNA MIR4277 microRNA 4277 O - 20121230 -9606 100422967 MIR3146 - - HGNC:38368|miRBase:MI0014172 7 - microRNA 3146 miscRNA MIR3146 microRNA 3146 O - 20121230 -9606 100422968 MIR4251 - - HGNC:38370|miRBase:MI0015861 1 - microRNA 4251 miscRNA MIR4251 microRNA 4251 O - 20121230 -9606 100422969 MIR2909 - - HGNC:38372|miRBase:MI0013083 17 - microRNA 2909 miscRNA MIR2909 microRNA 2909 O - 20121230 -9606 100422970 MIR1273D - - HGNC:38375|miRBase:MI0014254 1 - microRNA 1273d miscRNA MIR1273D microRNA 1273d O - 20121230 -9606 100422971 MIR4312 - - HGNC:38376|miRBase:MI0015842 15 - microRNA 4312 miscRNA MIR4312 microRNA 4312 O - 20121230 -9606 100422972 MIR3181 - - HGNC:38378|miRBase:MI0014223 16 - microRNA 3181 miscRNA MIR3181 microRNA 3181 O - 20120318 -9606 100422973 MIR3169 - - HGNC:38380|miRBase:MI0014200 13 - microRNA 3169 miscRNA MIR3169 microRNA 3169 O - 20121230 -9606 100422974 MIR3178 - - HGNC:38381|miRBase:MI0014212 16 - microRNA 3178 miscRNA MIR3178 microRNA 3178 O - 20121230 -9606 100422975 MIR4252 - - HGNC:38384|miRBase:MI0015864 1 - microRNA 4252 miscRNA MIR4252 microRNA 4252 O - 20121230 -9606 100422976 MIR4256 - - HGNC:38388|miRBase:MI0015855 1 - microRNA 4256 miscRNA MIR4256 microRNA 4256 O - 20121230 -9606 100422977 MIR1184-3 - - HGNC:38389|miRBase:MI0015972 X - microRNA 1184-3 miscRNA MIR1184-3 microRNA 1184-3 O - 20121230 -9606 100422978 MIR3185 - - HGNC:38391|miRBase:MI0014227 17 - microRNA 3185 miscRNA MIR3185 microRNA 3185 O - 20121230 -9606 100422979 MIR4324 - - HGNC:38392|miRBase:MI0015854 19 - microRNA 4324 miscRNA MIR4324 microRNA 4324 O - 20121230 -9606 100422980 MIR4323 - - HGNC:38394|miRBase:MI0015853 19 - microRNA 4323 miscRNA MIR4323 microRNA 4323 O - 20121230 -9606 100422981 MIR3173 - - HGNC:38174|miRBase:MI0014204 14 - microRNA 3173 miscRNA MIR3173 microRNA 3173 O - 20121230 -9606 100422982 MIR4286 - - HGNC:38186|miRBase:MI0015894 8 - microRNA 4286 miscRNA MIR4286 microRNA 4286 O - 20121230 -9606 100422983 MIR4314 - - HGNC:38191|miRBase:MI0015846 17 - microRNA 4314 miscRNA MIR4314 microRNA 4314 O - 20121230 -9606 100422984 MIR4308 - - HGNC:38206|miRBase:MI0015839 14 - microRNA 4308 miscRNA MIR4308 microRNA 4308 O - 20121230 -9606 100422985 MIR1184-2 - - HGNC:38211|miRBase:MI0015971 X - microRNA 1184-2 miscRNA MIR1184-2 microRNA 1184-2 O - 20121230 -9606 100422986 MIR3125 - - HGNC:38219|miRBase:MI0014142 2 - microRNA 3125 miscRNA MIR3125 microRNA 3125 O - 20121230 -9606 100422987 MIR3202-1 - - HGNC:38224|miRBase:MI0014252 X - microRNA 3202-1 miscRNA MIR3202-1 microRNA 3202-1 O - 20121230 -9606 100422988 MIR3156-1 - - HGNC:38241|miRBase:MI0014184 10 - microRNA 3156-1 miscRNA MIR3156-1 microRNA 3156-1 O - 20121230 -9606 100422989 MIR3155A - MIR3155|hsa-mir-3155a HGNC:38245|miRBase:MI0014183 10 - microRNA 3155a miscRNA MIR3155A microRNA 3155a O - 20121230 -9606 100422990 MIR3134 - - HGNC:38254|miRBase:MI0014155 3 - microRNA 3134 miscRNA MIR3134 microRNA 3134 O - 20121230 -9606 100422991 MIR1260B - - HGNC:38258|miRBase:MI0014197 11 - microRNA 1260b miscRNA MIR1260B microRNA 1260b O - 20121230 -9606 100422992 MIR3151 - - HGNC:38266|miRBase:MI0014178 8 - microRNA 3151 miscRNA MIR3151 microRNA 3151 O - 20121230 -9606 100422993 MIR3130-1 - MIR3130-3 HGNC:38275|miRBase:MI0014147 2 - microRNA 3130-1 miscRNA MIR3130-1 microRNA 3130-1 O - 20121230 -9606 100422994 MIR4267 - - HGNC:38286|miRBase:MI0015871 2 - microRNA 4267 miscRNA MIR4267 microRNA 4267 O - 20121230 -9606 100422995 MIR3175 - - HGNC:38299|miRBase:MI0014209 15 - microRNA 3175 miscRNA MIR3175 microRNA 3175 O - 20121230 -9606 100422996 MIR4262 - - HGNC:38308|miRBase:MI0015872 2 - microRNA 4262 miscRNA MIR4262 microRNA 4262 O - 20121230 -9606 100422997 MIR4257 - - HGNC:38312|miRBase:MI0015856 1 - microRNA 4257 miscRNA MIR4257 microRNA 4257 O - 20121230 -9606 100422998 MIR3199-2 - - HGNC:38205|miRBase:MI0014248 22 - microRNA 3199-2 miscRNA MIR3199-2 microRNA 3199-2 O - 20121230 -9606 100422999 MIR4278 - - HGNC:38243|miRBase:MI0015888 5 - microRNA 4278 miscRNA MIR4278 microRNA 4278 O - 20121230 -9606 100423000 MIR3161 - - HGNC:38285|miRBase:MI0014191 11 - microRNA 3161 miscRNA MIR3161 microRNA 3161 O - 20121230 -9606 100423001 MIR3145 - - HGNC:38327|miRBase:MI0014170 6 - microRNA 3145 miscRNA MIR3145 microRNA 3145 O - 20121230 -9606 100423002 MIR3130-2 - MIR3130-4 HGNC:38363|miRBase:MI0014148 2 - microRNA 3130-2 miscRNA MIR3130-2 microRNA 3130-2 O - 20121230 -9606 100423003 MIR3184 - - HGNC:38182|miRBase:MI0014226 17 - microRNA 3184 miscRNA MIR3184 microRNA 3184 O - 20121230 -9606 100423004 MIR4315-1 - - HGNC:38342|miRBase:MI0015844 17 - microRNA 4315-1 miscRNA MIR4315-1 microRNA 4315-1 O - 20121230 -9606 100423005 MIR4282 - - HGNC:38189|miRBase:MI0015890 6 - microRNA 4282 miscRNA MIR4282 microRNA 4282 O - 20121230 -9606 100423006 MIR3179-3 - - HGNC:38214|miRBase:MI0014221 16 - microRNA 3179-3 miscRNA MIR3179-3 microRNA 3179-3 O - 20121230 -9606 100423008 MIR3118-1 - - HGNC:38265|miRBase:MI0014131 1 - microRNA 3118-1 miscRNA MIR3118-1 microRNA 3118-1 O - 20121230 -9606 100423009 MIR4329 - - HGNC:38290|miRBase:MI0015901 X - microRNA 4329 miscRNA MIR4329 microRNA 4329 O - 20121230 -9606 100423010 MIR3119-2 - - HGNC:38315|miRBase:MI0014135 1 - microRNA 3119-2 miscRNA MIR3119-2 microRNA 3119-2 O - 20121230 -9606 100423011 MIR3138 - - HGNC:38341|miRBase:MI0014161 4 - microRNA 3138 miscRNA MIR3138 microRNA 3138 O - 20121230 -9606 100423012 MIR3177 - - HGNC:38364|miRBase:MI0014211 16 - microRNA 3177 miscRNA MIR3177 microRNA 3177 O - 20121230 -9606 100423013 MIR4310 - - HGNC:38383|miRBase:MI0015840 15 - microRNA 4310 miscRNA MIR4310 microRNA 4310 O - 20121230 -9606 100423014 MIR3196 - - HGNC:38198|miRBase:MI0014241 20 - microRNA 3196 miscRNA MIR3196 microRNA 3196 O - 20121230 -9606 100423015 MIR4289 - - HGNC:38278|miRBase:MI0015898 9 - microRNA 4289 miscRNA MIR4289 microRNA 4289 O - 20121230 -9606 100423016 MIR3159 - - HGNC:38181|miRBase:MI0014188 11 - microRNA 3159 miscRNA MIR3159 microRNA 3159 O - 20121230 -9606 100423017 MIR3139 - - HGNC:38201|miRBase:MI0014162 4 - microRNA 3139 miscRNA MIR3139 microRNA 3139 O - 20121230 -9606 100423018 MIR3156-3 - - HGNC:38229|miRBase:MI0014242 21 - microRNA 3156-3 miscRNA MIR3156-3 microRNA 3156-3 O - 20121230 -9606 100423019 MIR4307 - - HGNC:38257|miRBase:MI0015838 14 - microRNA 4307 miscRNA MIR4307 microRNA 4307 O - 20121230 -9606 100423020 MIR4258 - - HGNC:38281|miRBase:MI0015857 1 - microRNA 4258 miscRNA MIR4258 microRNA 4258 O - 20121230 -9606 100423021 MIR4298 - - HGNC:38313|miRBase:MI0015830 11 - microRNA 4298 miscRNA MIR4298 microRNA 4298 O - 20121230 -9606 100423023 MIR3197 - - HGNC:38366|miRBase:MI0014245 21 - microRNA 3197 miscRNA MIR3197 microRNA 3197 O - 20121230 -9606 100423024 MIR1270-2 - - HGNC:38387|miRBase:MI0015976 19 - microRNA 1270-2 miscRNA MIR1270-2 microRNA 1270-2 O - 20121209 -9606 100423025 MIR3198-1 - MIR3198 HGNC:38236|miRBase:MI0014246 22 - microRNA 3198-1 miscRNA MIR3198-1 microRNA 3198-1 O - 20121230 -9606 100423026 MIR4299 - - HGNC:38329|miRBase:MI0015829 11 - microRNA 4299 miscRNA MIR4299 microRNA 4299 O - 20121230 -9606 100423027 MIR4266 - - HGNC:38175|miRBase:MI0015870 2 - microRNA 4266 miscRNA MIR4266 microRNA 4266 O - 20121230 -9606 100423028 MIR4254 - - HGNC:38193|miRBase:MI0015862 1 - microRNA 4254 miscRNA MIR4254 microRNA 4254 O - 20121230 -9606 100423029 MIR3163 - - HGNC:38209|miRBase:MI0014193 11 - microRNA 3163 miscRNA MIR3163 microRNA 3163 O - 20121230 -9606 100423030 MIR3126 - - HGNC:38225|miRBase:MI0014143 2 - microRNA 3126 miscRNA MIR3126 microRNA 3126 O - 20121230 -9606 100423031 MIR4321 - - HGNC:38244|miRBase:MI0015852 19 - microRNA 4321 miscRNA MIR4321 microRNA 4321 O - 20121230 -9606 100423032 MIR3121 - - HGNC:38259|miRBase:MI0014137 1 - microRNA 3121 miscRNA MIR3121 microRNA 3121 O - 20121230 -9606 100423033 MIR3158-2 - - HGNC:38279|miRBase:MI0014187 10 - microRNA 3158-2 miscRNA MIR3158-2 microRNA 3158-2 O - 20121230 -9606 100423034 MIR3199-1 - - HGNC:38294|miRBase:MI0014247 22 - microRNA 3199-1 miscRNA MIR3199-1 microRNA 3199-1 O - 20121230 -9606 100423035 MIR4313 - - HGNC:38310|miRBase:MI0015843 15 - microRNA 4313 miscRNA MIR4313 microRNA 4313 O - 20121230 -9606 100423036 MIR2355 - - HGNC:38328|miRBase:MI0015873 2 - microRNA 2355 miscRNA MIR2355 microRNA 2355 O - 20121230 -9606 100423037 MIR3176 - - HGNC:38345|miRBase:MI0014210 16 - microRNA 3176 miscRNA MIR3176 microRNA 3176 O - 20121230 -9606 100423038 MIR466 - hsa-mir-466 HGNC:38359|miRBase:MI0014157 3 - microRNA 466 miscRNA MIR466 microRNA 466 O - 20120318 -9606 100423039 MIR3132 - - HGNC:38373|miRBase:MI0014152 2 - microRNA 3132 miscRNA MIR3132 microRNA 3132 O - 20121230 -9606 100423040 MIR3166 - - HGNC:38386|miRBase:MI0014196 11 - microRNA 3166 miscRNA MIR3166 microRNA 3166 O - 20121230 -9606 100423041 MIR4296 - - HGNC:38178|miRBase:MI0015823 10 - microRNA 4296 miscRNA MIR4296 microRNA 4296 O - 20121230 -9606 100423042 MIR4276 - - HGNC:38232|miRBase:MI0015882 4 - microRNA 4276 miscRNA MIR4276 microRNA 4276 O - 20121230 -9606 100423043 MIR4269 - - HGNC:38291|miRBase:MI0015875 2 - microRNA 4269 miscRNA MIR4269 microRNA 4269 O - 20121230 -9606 100423044 LOC100423044 - - - 7 - sodium-dependent phosphate transport protein 2B pseudogene pseudo - - - - 20121230 -9606 100423046 LOC100423046 - - - 12 - syntaxin 8 pseudogene pseudo - - - - 20121230 -9606 100423060 LOC100423060 - - - 18 18p11.2 asparagine synthetase (glutamine-hydrolyzing) pseudogene pseudo - - - - 20121230 -9606 100423061 ASNSP3 - - HGNC:39399 13 13q32 asparagine synthetase pseudogene 3 pseudo ASNSP3 asparagine synthetase pseudogene 3 O - 20121230 -9606 100423062 IGLL5 - - HGNC:38476|Ensembl:ENSG00000254709|Vega:OTTHUMG00000165670 22 22q11.22 immunoglobulin lambda-like polypeptide 5 protein-coding IGLL5 immunoglobulin lambda-like polypeptide 5 O G lambda-1|germline immunoglobulin lambda 1|immunoglobulin lambda-3 surrogate light chain|omega light chain protein 14.1 20121230 -9606 100431168 MYL6P2 - - HGNC:23772 21 21q22.2 myosin, light chain 6 pseudogene 2 pseudo MYL6P2 myosin, light chain 6 pseudogene 2 O - 20121230 -9606 100431172 KLRF2 - NKp65 HGNC:37646|Ensembl:ENSG00000256797 12 12p13 killer cell lectin-like receptor subfamily F, member 2 protein-coding KLRF2 killer cell lectin-like receptor subfamily F, member 2 O activating coreceptor NKp65|killer cell lectin-like receptor subfamily F member 2|lectin-like receptor F2 20121230 -9606 100431173 RNY4P16 - - HGNC:34066 1 1q42.11 RNA, Ro-associated Y4 pseudogene 16 pseudo RNY4P16 RNA, Ro-associated Y4 pseudogene 16 O - 20121230 -9606 100431174 LOC100431174 - - - 8 8p22 clathrin, light chain A pseudogene pseudo - - - - 20121230 -9606 100431175 LOC100431175 - - - 5 - apolipoprotein O-like pseudogene pseudo - - - - 20121230 -9606 100431177 LOC100431177 - - - 14 - basic helix-loop-helix domain containing, class B, 9 pseudogene pseudo - - - - 20121230 -9606 100462647 NKAIN1P1 - - HGNC:38593 1 1q21 Na+/K+ transporting ATPase interacting 1 pseudogene 1 pseudo NKAIN1P1 Na+/K+ transporting ATPase interacting 1 pseudogene 1 O - 20121230 -9606 100462648 LOC100462648 - - - 2 - Na+/K+ transporting ATPase interacting 1 pseudogene pseudo - - - - 20121230 -9606 100462652 LOC100462652 - - - X - solute carrier family 6 (amino acid transporter), member 14 pseudogene pseudo - - - - 20121230 -9606 100462676 RCHTS - - MIM:613328 15 15q11-q21.1 Roifman-Chitayat syndrome unknown - - - - 20120318 -9606 100462721 INTLQ1 - - MIM:603783 4 4p16-q34 Intelligence QTL1 unknown - - - - 20120622 -9606 100462722 INTLQ3 - - MIM:610294 6 6p25.3-p22.3 Intelligence QTL3 unknown - - - - 20120622 -9606 100462723 INTLQ2 - - MIM:610295 2 2q24.1-q31.1 Intelligence QTL3 unknown - - - - 20120622 -9606 100462724 OFC9 - - MIM:610361 13 13q33.1-q34 Orofacial cleft 9 unknown - - - - 20120622 -9606 100462725 NAFLD2 - - MIM:613387 11 11q23 Fatty liver disease, nonalcoholic, susceptibility to, 2 unknown - - - - 20120622 -9606 100462732 ATP6V1G1P6 - - HGNC:37673 5 5q14.1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 6 pseudo ATP6V1G1P6 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 6 O - 20121230 -9606 100462767 ACTBP12 - ACTGP5 HGNC:150 1 1p21 actin, beta pseudogene 12 pseudo ACTBP12 actin, beta pseudogene 12 O - 20121230 -9606 100462772 FTH1P22 - FTHL22 HGNC:37640 1 - ferritin, heavy polypeptide 1 pseudogene 22 pseudo FTH1P22 ferritin, heavy polypeptide 1 pseudogene 22 O - 20121230 -9606 100462776 RRAGAP1 - RRAGAP HGNC:20242 14 - Ras-related GTP binding A pseudogene 1 pseudo RRAGAP1 Ras-related GTP binding A pseudogene 1 O - 20121230 -9606 100462780 FTLP9 - - HGNC:37958 4 - ferritin, light polypeptide pseudogene 9 pseudo FTLP9 ferritin, light polypeptide pseudogene 9 O - 20121230 -9606 100462782 MEMO1P3 - - HGNC:38503 3 - mediator of cell motility 1 pseudogene 3 pseudo MEMO1P3 mediator of cell motility 1 pseudogene 3 O - 20121230 -9606 100462785 MEMO1P4 - - HGNC:38504 X - mediator of cell motility 1 pseudogene 4 pseudo MEMO1P4 mediator of cell motility 1 pseudogene 4 O - 20121230 -9606 100462786 FTLP18 - - HGNC:37968 1 - ferritin, light polypeptide pseudogene 18 pseudo FTLP18 ferritin, light polypeptide pseudogene 18 O - 20121230 -9606 100462787 CICP10 - - HGNC:37901 2 - capicua homolog (Drosophila) pseudogene 10 pseudo CICP10 capicua homolog (Drosophila) pseudogene 10 O - 20121230 -9606 100462788 FTLP6 - - HGNC:37954 11 - ferritin, light polypeptide pseudogene 6 pseudo FTLP6 ferritin, light polypeptide pseudogene 6 O - 20121230 -9606 100462790 FTLP8 - - HGNC:37956 13 - ferritin, light polypeptide pseudogene 8 pseudo FTLP8 ferritin, light polypeptide pseudogene 8 O - 20121230 -9606 100462792 FTLP12 - - HGNC:37961 17 - ferritin, light polypeptide pseudogene 12 pseudo FTLP12 ferritin, light polypeptide pseudogene 12 O - 20121230 -9606 100462793 FTLP13 - - HGNC:37963 17 - ferritin, light polypeptide pseudogene 13 pseudo FTLP13 ferritin, light polypeptide pseudogene 13 O - 20121230 -9606 100462794 FTLP14 - - HGNC:37964 16 - ferritin, light polypeptide pseudogene 14 pseudo FTLP14 ferritin, light polypeptide pseudogene 14 O - 20121230 -9606 100462795 H2AFZP4 - - HGNC:38015 11 - H2A histone family, member Z pseudogene 4 pseudo H2AFZP4 H2A histone family, member Z pseudogene 4 O - 20121230 -9606 100462797 FTH1P24 - FTHL24 HGNC:37642 4 - ferritin, heavy polypeptide 1 pseudogene 24 pseudo FTH1P24 ferritin, heavy polypeptide 1 pseudogene 24 O - 20121230 -9606 100462799 FTH1P25 - FTHL25 HGNC:37643 1 - ferritin, heavy polypeptide 1 pseudogene 25 pseudo FTH1P25 ferritin, heavy polypeptide 1 pseudogene 25 O - 20121230 -9606 100462800 H2AFZP6 - - HGNC:38019 22 - H2A histone family, member Z pseudogene 6 pseudo H2AFZP6 H2A histone family, member Z pseudogene 6 O - 20121230 -9606 100462809 RSL24D1P8 - - HGNC:37873 19 - ribosomal L24 domain containing 1 pseudogene 8 pseudo RSL24D1P8 ribosomal L24 domain containing 1 pseudogene 8 O - 20121230 -9606 100462810 RHOT1P3 - - HGNC:37839 13 - ras homolog family member T1 pseudogene 3 pseudo RHOT1P3 ras homolog family member T1 pseudogene 3 O - 20121230 -9606 100462811 RHOT1P2 - - HGNC:37838 21 - ras homolog family member T1 pseudogene 2 pseudo RHOT1P2 ras homolog family member T1 pseudogene 2 O - 20121230 -9606 100462812 FGFR3P1 - D84394.2|FGFR3P|FGFR6 HGNC:21664 6 6p21.33 fibroblast growth factor receptor 3 pseudogene 1 pseudo FGFR3P1 fibroblast growth factor receptor 3 pseudogene 1 O - 20121230 -9606 100462813 RHOT1P1 - RHOT1P|RHOT3 HGNC:23777 18 18p11.21 ras homolog family member T1 pseudogene 1 pseudo RHOT1P1 ras homolog family member T1 pseudogene 1 O - 20121230 -9606 100462815 FGFR3P2 - - HGNC:37947 11 - fibroblast growth factor receptor 3 pseudogene 2 pseudo FGFR3P2 fibroblast growth factor receptor 3 pseudogene 2 O - 20121230 -9606 100462816 FGFR3P3 - - HGNC:37948 20 - fibroblast growth factor receptor 3 pseudogene 3 pseudo FGFR3P3 fibroblast growth factor receptor 3 pseudogene 3 O - 20121230 -9606 100462820 USP9YP6 - CDY24P HGNC:38078 Y Yq11.221 ubiquitin specific peptidase 9, Y-linked pseudogene 6 pseudo USP9YP6 ubiquitin specific peptidase 9, Y-linked pseudogene 6 O - 20121209 -9606 100462821 USP9YP7 - - HGNC:38079 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 7 pseudo USP9YP7 ubiquitin specific peptidase 9, Y-linked pseudogene 7 O - 20121209 -9606 100462824 EIF4A1P3 - - HGNC:37922 9 - eukaryotic translation initiation factor 4A1 pseudogene 3 pseudo EIF4A1P3 eukaryotic translation initiation factor 4A1 pseudogene 3 O - 20121230 -9606 100462825 ATP7BP1 - - HGNC:31014 18 - ATPase, Cu++ transporting, beta polypeptide pseudogene 1 pseudo ATP7BP1 ATPase, Cu++ transporting, beta polypeptide pseudogene 1 O - 20121230 -9606 100462826 EIF4A1P13 - - HGNC:37934 7 - eukaryotic translation initiation factor 4A1 pseudogene 13 pseudo EIF4A1P13 eukaryotic translation initiation factor 4A1 pseudogene 13 O - 20121230 -9606 100462829 GCNT1P4 - - HGNC:37974 6 - glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 4 pseudo GCNT1P4 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 4 O - 20121230 -9606 100462830 EIF4A1P12 - - HGNC:37933 14 - eukaryotic translation initiation factor 4A1 pseudogene 12 pseudo EIF4A1P12 eukaryotic translation initiation factor 4A1 pseudogene 12 O - 20121230 -9606 100462832 PNPLA4P1 - - HGNC:38085 Y - patatin-like phospholipase domain containing 4 pseudogene 1 pseudo PNPLA4P1 patatin-like phospholipase domain containing 4 pseudogene 1 O - 20121230 -9606 100462833 ISCUP1 - - HGNC:38021 1 - iron-sulfur cluster scaffold homolog (E. coli) pseudogene 1 pseudo ISCUP1 iron-sulfur cluster scaffold homolog (E. coli) pseudogene 1 O - 20121230 -9606 100462836 EIF3EP3 - - HGNC:37920 2 - eukaryotic translation initiation factor 3, subunit E pseudogene 3 pseudo EIF3EP3 eukaryotic translation initiation factor 3, subunit E pseudogene 3 O - 20121230 -9606 100462838 ATP6V1G1P3 - - HGNC:37670 9 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 3 pseudo ATP6V1G1P3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 3 O - 20121230 -9606 100462840 ATP6V1G1P5 - - HGNC:37672 5 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 5 pseudo ATP6V1G1P5 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 5 O - 20121230 -9606 100462843 ATP6V1G1P4 - - HGNC:37671 10 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 4 pseudo ATP6V1G1P4 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 4 O - 20121230 -9606 100462844 ATP6V1E1P2 - ATP6EP2|ATP6V1EP2 HGNC:860 18 - ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 2 pseudo ATP6V1E1P2 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 2 O - 20121230 -9606 100462850 COX6B1P4 - COX6BP4 HGNC:2284 8 8p21.2 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 4 pseudo COX6B1P4 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 4 O - 20121230 -9606 100462851 COX6B1P6 - - HGNC:37676 8 - cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 6 pseudo COX6B1P6 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 6 O - 20121230 -9606 100462857 LSM6P2 - - HGNC:37811 12 - LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 2 pseudo LSM6P2 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100462862 ATP5LP8 - - HGNC:38170 11 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 8 pseudo ATP5LP8 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 8 O - 20121230 -9606 100462865 ATP5LP6 - - HGNC:38168 17 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 6 pseudo ATP5LP6 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 6 O - 20121230 -9606 100462866 TCEB1P21 - - HGNC:38157 2 - transcription elongation factor B (SIII), polypeptide 1 pseudogene 21 pseudo TCEB1P21 transcription elongation factor B (SIII), polypeptide 1 pseudogene 21 O - 20121230 -9606 100462867 TCEB1P6 - - HGNC:38142 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 6 pseudo TCEB1P6 transcription elongation factor B (SIII), polypeptide 1 pseudogene 6 O - 20121209 -9606 100462868 TCEB1P7 - - HGNC:38143 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 7 pseudo TCEB1P7 transcription elongation factor B (SIII), polypeptide 1 pseudogene 7 O - 20121209 -9606 100462869 TCEB1P8 - - HGNC:38144 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 8 pseudo TCEB1P8 transcription elongation factor B (SIII), polypeptide 1 pseudogene 8 O - 20121230 -9606 100462870 TCEB1P9 - - HGNC:38145 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 9 pseudo TCEB1P9 transcription elongation factor B (SIII), polypeptide 1 pseudogene 9 O - 20121230 -9606 100462871 TCEB1P10 - - HGNC:38146 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 10 pseudo TCEB1P10 transcription elongation factor B (SIII), polypeptide 1 pseudogene 10 O - 20121230 -9606 100462872 TCEB1P11 - - HGNC:38147 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 11 pseudo TCEB1P11 transcription elongation factor B (SIII), polypeptide 1 pseudogene 11 O - 20121230 -9606 100462873 TCEB1P4 - - HGNC:38141 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 4 pseudo TCEB1P4 transcription elongation factor B (SIII), polypeptide 1 pseudogene 4 O - 20121209 -9606 100462874 TCEB1P12 - - HGNC:38148 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 12 pseudo TCEB1P12 transcription elongation factor B (SIII), polypeptide 1 pseudogene 12 O - 20121209 -9606 100462875 TCEB1P13 - - HGNC:38149 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 13 pseudo TCEB1P13 transcription elongation factor B (SIII), polypeptide 1 pseudogene 13 O - 20121209 -9606 100462876 TCEB1P14 - - HGNC:38150 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 14 pseudo TCEB1P14 transcription elongation factor B (SIII), polypeptide 1 pseudogene 14 O - 20121209 -9606 100462877 TCEB1P15 - - HGNC:38151 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 15 pseudo TCEB1P15 transcription elongation factor B (SIII), polypeptide 1 pseudogene 15 O - 20121209 -9606 100462878 TCEB1P16 - - HGNC:38152 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 16 pseudo TCEB1P16 transcription elongation factor B (SIII), polypeptide 1 pseudogene 16 O - 20121209 -9606 100462879 TCEB1P17 - - HGNC:38153 Y - transcription elongation factor B (SIII), polypeptide 1 pseudogene 17 pseudo TCEB1P17 transcription elongation factor B (SIII), polypeptide 1 pseudogene 17 O - 20121209 -9606 100462880 TCEB1P19 - - HGNC:38155 1 - transcription elongation factor B (SIII), polypeptide 1 pseudogene 19 pseudo TCEB1P19 transcription elongation factor B (SIII), polypeptide 1 pseudogene 19 O - 20121230 -9606 100462881 TCEB1P23 - - HGNC:38159 13 - transcription elongation factor B (SIII), polypeptide 1 pseudogene 23 pseudo TCEB1P23 transcription elongation factor B (SIII), polypeptide 1 pseudogene 23 O - 20121230 -9606 100462886 TAF13P2 - - HGNC:38161 2 - TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa pseudogene 2 pseudo TAF13P2 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa pseudogene 2 O - 20121230 -9606 100462953 MINOS1P1 - CG012|N4BP2L2-IT|N4BP2L2-IT1|N4BP2L2IT1 HGNC:25036 13 13q13.1 mitochondrial inner membrane organizing system 1 pseudogene 1 pseudo MINOS1P1 mitochondrial inner membrane organizing system 1 pseudogene 1 O - 20121230 -9606 100462954 MINOS1P3 - - HGNC:44093 3 - mitochondrial inner membrane organizing system 1 pseudogene 3 pseudo MINOS1P3 mitochondrial inner membrane organizing system 1 pseudogene 3 O - 20121230 -9606 100462957 MINOS1P4 - - HGNC:44094 4 4q mitochondrial inner membrane organizing system 1 pseudogene 4 pseudo MINOS1P4 mitochondrial inner membrane organizing system 1 pseudogene 4 O - 20121230 -9606 100462977 MTRNR2L1 - HN1 HGNC:37155|Ensembl:ENSG00000256618|Vega:OTTHUMG00000179068 17 17p11.2 MT-RNR2-like 1 protein-coding MTRNR2L1 MT-RNR2-like 1 O MT-RNR2-like protein 1|MTRNR2-like 1|humanin 1|humanin-like protein 1 20121230 -9606 100462981 MTRNR2L2 - HN2 HGNC:37156 5 5q14.1 MT-RNR2-like 2 protein-coding MTRNR2L2 MT-RNR2-like 2 O MT-RNR2-like protein 2|MTRNR2-like 2|humanin 2|humanin-like protein 2 20121230 -9606 100462982 CCT5-2P - - - 13 - chaperonin containing TCP1, subunit 5 (epsilon) pseudogene 2 pseudo - - - - 20121230 -9606 100462983 MTRNR2L3 - HN3 HGNC:37157|Ensembl:ENSG00000256222 20 20q13.31 MT-RNR2-like 3 protein-coding MTRNR2L3 MT-RNR2-like 3 O MT-RNR2-like protein 3|MTRNR2-like 3|humanin 3|humanin-like protein 3 20121230 -9606 100462984 HSPD1P22 - HSPD1-21P HGNC:39502 5 - heat shock 60kDa protein 1 (chaperonin) pseudogene 22 pseudo HSPD1P22 heat shock 60kDa protein 1 (chaperonin) pseudogene 22 O - 20121230 -9606 100462985 HSPD1P16 - HSPD1-13P HGNC:35128 6 - heat shock 60kDa protein 1 (chaperonin) pseudogene 16 pseudo HSPD1P16 heat shock 60kDa protein 1 (chaperonin) pseudogene 16 O - 20121230 -9606 100462986 HSPD1P17 - HSPD1-19P HGNC:35147 10 - heat shock 60kDa protein 1 (chaperonin) pseudogene 17 pseudo HSPD1P17 heat shock 60kDa protein 1 (chaperonin) pseudogene 17 O - 20121230 -9606 100462987 HSPD1P13 - HSPD1-16P HGNC:35138 11 - heat shock 60kDa protein 1 (chaperonin) pseudogene 13 pseudo HSPD1P13 heat shock 60kDa protein 1 (chaperonin) pseudogene 13 O - 20121230 -9606 100462988 LOC100462988 - - - 12 - heat shock 60kDa protein 1 (chaperonin) pseudogene pseudo - - - - 20121230 -9606 100462989 HSPD1P20 - HSPD1-20P HGNC:38591 12 - heat shock 60kDa protein 1 (chaperonin) pseudogene 20 pseudo HSPD1P20 heat shock 60kDa protein 1 (chaperonin) pseudogene 20 O - 20121230 -9606 100462990 HSPD1P21 - HSPD1-3P HGNC:38592 20 - heat shock 60kDa protein 1 (chaperonin) pseudogene 21 pseudo HSPD1P21 heat shock 60kDa protein 1 (chaperonin) pseudogene 21 O - 20121230 -9606 100463285 MTRNR2L4 - HN4 HGNC:37161|Ensembl:ENSG00000232196 16 16p13.3 MT-RNR2-like 4 protein-coding MTRNR2L4 MT-RNR2-like 4 O MT-RNR2-like protein 4|MTRNR2-like 4|humanin 4|humanin-like protein 4 20121230 -9606 100463286 CCT6P5 - CCT6-2P HGNC:38608 11 - chaperonin containing TCP1, subunit 6 (zeta) pseudogene 5 pseudo CCT6P5 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 5 O - 20121230 -9606 100463288 HSPD1P19 - HSPD1-18P HGNC:38590 20 - heat shock 60kDa protein 1 (chaperonin) pseudogene 19 pseudo HSPD1P19 heat shock 60kDa protein 1 (chaperonin) pseudogene 19 O - 20121230 -9606 100463289 MTRNR2L5 - HN5 HGNC:37162|Ensembl:ENSG00000249860 10 10q21.1 MT-RNR2-like 5 protein-coding MTRNR2L5 MT-RNR2-like 5 O MT-RNR2-like protein 5|MTRNR2-like 5|humanin 5|humanin-like protein 5 20121230 -9606 100463482 MTRNR2L6 - HN6 HGNC:37163 7 7q34 MT-RNR2-like 6 protein-coding MTRNR2L6 MT-RNR2-like 6 O MT-RNR2-like protein 6|MTRNR2-like 6|humanin 6|humanin-like protein 6 20121230 -9606 100463486 MTRNR2L8 - HN8 HGNC:37165|Ensembl:ENSG00000255823 11 11p15.3 MT-RNR2-like 8 protein-coding MTRNR2L8 MT-RNR2-like 8 O MT-RNR2-like protein 8|MTRNR2-like 8|humanin 8|humanin-like protein 8 20121230 -9606 100463487 MTRNR2L9 - HN9 HGNC:37166 6 6q11.1 MT-RNR2-like 9 (pseudogene) pseudo MTRNR2L9 MT-RNR2-like 9 (pseudogene) O - 20121230 -9606 100463488 MTRNR2L10 - HN10 HGNC:37167|Ensembl:ENSG00000256045 X Xp11.21 MT-RNR2-like 10 protein-coding MTRNR2L10 MT-RNR2-like 10 O MT-RNR2-like protein 10|MTRNR2-like 10|humanin 10|humanin-like protein 10 20121230 -9606 100463489 MTRNR2L11 - HN11 HGNC:37168 1 1q43 MT-RNR2-like 11 (pseudogene) pseudo MTRNR2L11 MT-RNR2-like 11 (pseudogene) O - 20121230 -9606 100463498 MTRNR2L12 - HN12 HGNC:37169 3 3q11.2 MT-RNR2-like 12 (pseudogene) pseudo MTRNR2L12 MT-RNR2-like 12 (pseudogene) O - 20121230 -9606 100463500 MTRNR2L13 - HN13 HGNC:37170 4 4q26 MT-RNR2-like 13 (pseudogene) pseudo MTRNR2L13 MT-RNR2-like 13 (pseudogene) O - 20121230 -9606 100463528 LSP1P1 - - HGNC:39716 13 13q12.13 lymphocyte-specific protein 1 pseudogene 1 pseudo LSP1P1 lymphocyte-specific protein 1 pseudogene 1 O - 20121230 -9606 100498661 LOC100498661 - - - 12 12q oxysterol binding protein-like 9 pseudogene pseudo - - - - 20121230 -9606 100498859 LOC100498859 - - - 3 3q25.31 uncharacterized LOC100498859 miscRNA - - - - 20121230 -9606 100499165 FGQTL1 - - MIM:612108 2 2q24-q32 Fasting plasma glucose level QTL 1 unknown - - - - 20120622 -9606 100499166 LPRS6 - - MIM:613407 13 13q14.11 Leprosy, susceptiblity to, 6 unknown - - - - 20120622 -9606 100499167 EOE2 - - MIM:613412 5 5q22 Esophagitis, eosinophilic, 2 unknown - - - - 20120622 -9606 100499168 FGQTL6 - BWQTL3|PGQTL1 MIM:613460 3 3q21 Fasting plasma glucose level QTL 6 unknown - - - - 20120622 -9606 100499169 FGQTL4 - - MIM:613462 7 7p21.2 Fasting plasma glucose level QTL 4 unknown - - - - 20120622 -9606 100499171 LINC00276 - NCRNA00276 HGNC:38663 2 2p24.3 long intergenic non-protein coding RNA 276 miscRNA LINC00276 long intergenic non-protein coding RNA 276 O - 20121021 -9606 100499177 THAP9-AS1 - - HGNC:44172 4 - THAP9 antisense RNA 1 miscRNA THAP9-AS1 THAP9 antisense RNA 1 O - 20121230 -9606 100499183 LOC100499183 - - - 8 8q22.3 uncharacterized LOC100499183 miscRNA - - - - 20121230 -9606 100499191 LOC100499191 - - - 7 7q male-specific lethal 3 homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100499192 LOC100499192 - - - 8 8q male-specific lethal 3 homolog (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100499194 LOC100499194 - - - 2 2q14.1 uncharacterized LOC100499194 miscRNA - - - - 20121230 -9606 100499221 LOC100499221 - - - 15 - uncharacterized LOC100499221 miscRNA - - - - 20120622 -9606 100499223 LOC100499223 - - - 1 1q25.2 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) pseudogene pseudo - - - - 20121230 -9606 100499227 LOC100499227 - - - 11 11q23 uncharacterized LOC100499227 miscRNA - - - - 20121230 -9606 100499251 GMFBP1 - - HGNC:38654 3 3q12.2 glia maturation factor, beta pseudogene 1 pseudo GMFBP1 glia maturation factor, beta pseudogene 1 O - 20121230 -9606 100499252 ZBTB12B - ZNF920 HGNC:37702 4 4p14 zinc finger and BTB domain containing 12B, pseudogene pseudo ZBTB12B zinc finger and BTB domain containing 12B, pseudogene O - 20121103 -9606 100499253 YWHAQP6 - - HGNC:37685 3 3q23 YWHAQ pseudogene 6 pseudo YWHAQP6 YWHAQ pseudogene 6 O - 20121230 -9606 100499258 SNRPBP1 - - HGNC:38665 7 7q21.11 small nuclear ribonucleoprotein polypeptides B and B1 pseudogene 1 pseudo SNRPBP1 small nuclear ribonucleoprotein polypeptides B and B1 pseudogene 1 O - 20121230 -9606 100499259 CKS1BP4 - - HGNC:17395 11 11q14.1 CDC28 protein kinase regulatory subunit 1B pseudogene 4 pseudo CKS1BP4 CDC28 protein kinase regulatory subunit 1B pseudogene 4 O - 20121230 -9606 100499260 AMMEC - CXDELq22.3|DELXq22.3 MIM:300194 X Xq22.3 Alport syndrome, mental retardation, midface hypoplasia, and elliptocytosis unknown - - - - 20120622 -9606 100499261 BTF3P6 - - HGNC:23765 21 21q22.1 basic transcription factor 3 pseudogene 6 pseudo BTF3P6 basic transcription factor 3 pseudogene 6 O - 20121230 -9606 100499397 DYZ1L1 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499398 DYZ1L4 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499399 LOC100499399 - - - 3 3p21.1 adenylate kinase 3 pseudogene pseudo - - - - 20121230 -9606 100499405 LOC100499405 - - - 12 12p13.31 uncharacterized LOC100499405 miscRNA - - - - 20121230 -9606 100499409 DYZ1L6 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499411 DYZ1L7 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499412 DYZ1L16 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499416 TOMM22P1 - - HGNC:38736 Y Yq11.223 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 1 pseudo TOMM22P1 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 1 O - 20121230 -9606 100499417 TOMM22P2 - - HGNC:38737 Y Yp11.31 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 2 pseudo TOMM22P2 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 2 O - 20121230 -9606 100499418 MTCYBP1 - - HGNC:38729 Y - MT-CYB pseudogene 1 pseudo MTCYBP1 MT-CYB pseudogene 1 O - 20121209 -9606 100499435 TEX16P - - HGNC:37957 X Xq21.1 testis expressed 16, pseudogene pseudo TEX16P testis expressed 16, pseudogene O - 20121230 -9606 100499437 DYZ1L19 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499438 DYZ1L20 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499442 DYZ1L23 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499443 DYZ1L27 - - - Y Yq12 DYZ1 repeat sequence other - - - - 20120318 -9606 100499457 MTND2P3 - - HGNC:38727 Y Yp11.2 MT-ND2 pseudogene 3 pseudo MTND2P3 MT-ND2 pseudogene 3 O - 20121209 -9606 100499466 LINC00674 - - HGNC:44355 17 17q24.2 long intergenic non-protein coding RNA 674 miscRNA LINC00674 long intergenic non-protein coding RNA 674 O - 20121230 -9606 100499467 LINC00673 - - HGNC:44354 17 - long intergenic non-protein coding RNA 673 miscRNA LINC00673 long intergenic non-protein coding RNA 673 O - 20121230 -9606 100499468 MTND1P1 - - HGNC:38728 Y Yp11.2 MT-ND1 pseudogene 1 pseudo MTND1P1 MT-ND1 pseudogene 1 O - 20121209 -9606 100499469 MTND6P1 - - HGNC:38730 Y Yp11.2 MT-ND6 pseudogene 1 pseudo MTND6P1 MT-ND6 pseudogene 1 O - 20121230 -9606 100499471 LOC100499471 - - - X - leucine rich repeat containing 14 pseudogene pseudo - - - - 20121230 -9606 100499481 MED13P1 - - HGNC:38733 Y Yq11.221 mediator complex subunit 13 pseudogene 1 pseudo MED13P1 mediator complex subunit 13 pseudogene 1 O - 20121230 -9606 100499483 C9orf174 hCG_1994099 BDAG1|KIAA1529 HGNC:29303|Ensembl:ENSG00000197816|Vega:OTTHUMG00000167001 9 9q22.33 chromosome 9 open reading frame 174 protein-coding C9orf174 chromosome 9 open reading frame 174 O Behcet's Disease Associated Gene 1|uncharacterized protein C9orf174 20121230 -9606 100499484 LOC100499484 RP11-23J9.1 - - 9 9q22.33 SUGT1-1300002K09Rik pseudogene pseudo - - - - 20121230 -9606 100499485 SRIP2 - - HGNC:38734 X Xq21.31 sorcin pseudogene 2 pseudo SRIP2 sorcin pseudogene 2 O - 20121230 -9606 100499489 LOC100499489 - - - 10 10p12.2 uncharacterized LOC100499489 miscRNA - - - - 20121230 -9606 100499496 LOC100499496 - - - X Xq13 matrin 3 pseudogene pseudo - - - - 20121230 -9606 100499497 LOC100499497 - - - 1 - matrin 3 pseudogene pseudo - - - - 20121230 -9606 100499532 ATPLS - - MIM:107320 6 6p21.3 antiphospholipid syndrome, familial unknown - - - - 20120622 -9606 100499563 PTP4A1P2 - - HGNC:41929 12 12q24 protein tyrosine phosphatase type IVA, member 1 pseudogene 2 pseudo PTP4A1P2 protein tyrosine phosphatase type IVA, member 1 pseudogene 2 O - 20121230 -9606 100500719 LOC100500719 - - - 22 22q12.3 Hermansky-Pudlak syndrome 1 pseudogene pseudo - - - - 20121230 -9606 100500737 PPIAP20 - - HGNC:38037 19 19p13.2 peptidylprolyl isomerase A (cyclophilin A) pseudogene 20 pseudo PPIAP20 peptidylprolyl isomerase A (cyclophilin A) pseudogene 20 O - 20121230 -9606 100500773 LOC100500773 - - - 8 - serine/arginine-rich splicing factor 3 pseudogene pseudo - - - - 20121230 -9606 100500797 USP9YP19 AC010682.5 - HGNC:38755 Y Yq11.23 ubiquitin specific peptidase 9, Y-linked pseudogene 19 pseudo USP9YP19 ubiquitin specific peptidase 9, Y-linked pseudogene 19 O - 20121209 -9606 100500798 USP9YP23 - - HGNC:38759 Y Yq11.222 ubiquitin specific peptidase 9, Y-linked pseudogene 23 pseudo USP9YP23 ubiquitin specific peptidase 9, Y-linked pseudogene 23 O - 20121209 -9606 100500801 MIR3659 - - HGNC:38882|miRBase:MI0016060 1 - microRNA 3659 miscRNA MIR3659 microRNA 3659 O - 20121230 -9606 100500802 MIR3685 - - HGNC:38886|miRBase:MI0016086 12 - microRNA 3685 miscRNA MIR3685 microRNA 3685 O - 20121230 -9606 100500803 MIR3919 - - HGNC:38890|miRBase:MI0016425 3 - microRNA 3919 miscRNA MIR3919 microRNA 3919 O - 20121230 -9606 100500804 MIR3654 - - HGNC:38896|miRBase:MI0016054 7 - microRNA 3654 miscRNA MIR3654 microRNA 3654 O - 20121230 -9606 100500805 MIR3607 - - HGNC:38900|miRBase:MI0015997 5 - microRNA 3607 miscRNA MIR3607 microRNA 3607 O - 20121230 -9606 100500807 MIR374C - - HGNC:38907|miRBase:MI0016684 X - microRNA 374c miscRNA MIR374C microRNA 374c O - 20121230 -9606 100500808 MIR3917 - - HGNC:38911|miRBase:MI0016423 1 - microRNA 3917 miscRNA MIR3917 microRNA 3917 O - 20121230 -9606 100500809 MIR23C - hsa-mir-23c HGNC:38913|miRBase:MI0016010 X - microRNA 23c miscRNA MIR23C microRNA 23c O - 20121230 -9606 100500810 MIR3620 - - HGNC:38917|miRBase:MI0016011 1 - microRNA 3620 miscRNA MIR3620 microRNA 3620 O - 20121230 -9606 100500811 MIR3621 - - HGNC:38930|miRBase:MI0016012 9 - microRNA 3621 miscRNA MIR3621 microRNA 3621 O - 20121230 -9606 100500812 MIR3677 - - HGNC:38932|miRBase:MI0016078 16 - microRNA 3677 miscRNA MIR3677 microRNA 3677 O - 20121230 -9606 100500813 MIR3646 - - HGNC:38935|miRBase:MI0016046 20 - microRNA 3646 miscRNA MIR3646 microRNA 3646 O - 20121230 -9606 100500814 MIR3616 - - HGNC:38943|miRBase:MI0016006 20 - microRNA 3616 miscRNA MIR3616 microRNA 3616 O - 20121230 -9606 100500815 MIR3687 - - HGNC:38946|miRBase:MI0016088 21 - microRNA 3687 miscRNA MIR3687 microRNA 3687 O - 20121230 -9606 100500816 MIR3649 - - HGNC:38948|miRBase:MI0016049 12 - microRNA 3649 miscRNA MIR3649 microRNA 3649 O - 20121230 -9606 100500817 MIR3612 - - HGNC:38951|miRBase:MI0016002 12 - microRNA 3612 miscRNA MIR3612 microRNA 3612 O - 20121230 -9606 100500818 MIR3945 - - HGNC:38954|miRBase:MI0016602 4 - microRNA 3945 miscRNA MIR3945 microRNA 3945 O - 20121230 -9606 100500819 MIR3609 - - HGNC:38956|miRBase:MI0015999 7 7q21.2-q22.1 microRNA 3609 miscRNA MIR3609 microRNA 3609 O - 20121230 -9606 100500820 MIR3655 - - HGNC:38960|miRBase:MI0016055 5 - microRNA 3655 miscRNA MIR3655 microRNA 3655 O - 20121230 -9606 100500821 MIR3910-1 - - HGNC:38966|miRBase:MI0016414 9 - microRNA 3910-1 miscRNA MIR3910-1 microRNA 3910-1 O - 20121230 -9606 100500822 MIR3937 - - HGNC:38970|miRBase:MI0016593 X - microRNA 3937 miscRNA MIR3937 microRNA 3937 O - 20121230 -9606 100500823 MIR3920 - - HGNC:38974|miRBase:MI0016427 11 - microRNA 3920 miscRNA MIR3920 microRNA 3920 O - 20121230 -9606 100500824 MIR3650 - - HGNC:38981|miRBase:MI0016050 5 - microRNA 3650 miscRNA MIR3650 microRNA 3650 O - 20121230 -9606 100500825 MIR3660 - - HGNC:38985|miRBase:MI0016061 5 - microRNA 3660 miscRNA MIR3660 microRNA 3660 O - 20121230 -9606 100500826 MIR3909 - - HGNC:38987|miRBase:MI0016413 22 - microRNA 3909 miscRNA MIR3909 microRNA 3909 O - 20121230 -9606 100500827 MIR3614 - - HGNC:38995|miRBase:MI0016004 17 - microRNA 3614 miscRNA MIR3614 microRNA 3614 O - 20121230 -9606 100500828 MIR3619 - - HGNC:38998|miRBase:MI0016009 22 - microRNA 3619 miscRNA MIR3619 microRNA 3619 O - 20121230 -9606 100500829 MIR3943 - - HGNC:38888|miRBase:MI0016600 7 - microRNA 3943 miscRNA MIR3943 microRNA 3943 O - 20121230 -9606 100500830 MIR550B2 - - HGNC:38910|miRBase:MI0016687 7 - microRNA 550b-2 miscRNA MIR550B2 microRNA 550b-2 O - 20121230 -9606 100500831 MIR3912 - - HGNC:38923|miRBase:MI0016416 5 - microRNA 3912 miscRNA MIR3912 microRNA 3912 O - 20121230 -9606 100500832 MIR3658 - - HGNC:38963|miRBase:MI0016058 1 - microRNA 3658 miscRNA MIR3658 microRNA 3658 O - 20121230 -9606 100500833 MIR3653 - - HGNC:38971|miRBase:MI0016053 22 - microRNA 3653 miscRNA MIR3653 microRNA 3653 O - 20121230 -9606 100500834 MIR3924 - - HGNC:38984|miRBase:MI0016432 10 - microRNA 3924 miscRNA MIR3924 microRNA 3924 O - 20121230 -9606 100500835 MIR3907 - - HGNC:38988|miRBase:MI0016410 7 - microRNA 3907 miscRNA MIR3907 microRNA 3907 O - 20121230 -9606 100500836 MIR3914-1 - - HGNC:38993|miRBase:MI0016419 7 - microRNA 3914-1 miscRNA MIR3914-1 microRNA 3914-1 O - 20121230 -9606 100500837 MIR3606 - - HGNC:38881|miRBase:MI0015996 2 - microRNA 3606 miscRNA MIR3606 microRNA 3606 O - 20121230 -9606 100500838 MIR3926-2 - - HGNC:38883|miRBase:MI0016437 8 - microRNA 3926-2 miscRNA MIR3926-2 microRNA 3926-2 O - 20121230 -9606 100500839 MIR3686 - - HGNC:38887|miRBase:MI0016087 8 - microRNA 3686 miscRNA MIR3686 microRNA 3686 O - 20121230 -9606 100500840 MIR3656 - - HGNC:38889|miRBase:MI0016056 11 - microRNA 3656 miscRNA MIR3656 microRNA 3656 O - 20121230 -9606 100500841 MIR3678 - - HGNC:38891|miRBase:MI0016079 17 - microRNA 3678 miscRNA MIR3678 microRNA 3678 O - 20121230 -9606 100500842 MIR3652 - - HGNC:38894|miRBase:MI0016052 12 - microRNA 3652 miscRNA MIR3652 microRNA 3652 O - 20121230 -9606 100500843 MIR3922 - - HGNC:38895|miRBase:MI0016429 12 - microRNA 3922 miscRNA MIR3922 microRNA 3922 O - 20121230 -9606 100500844 MIR3664 - - HGNC:38899|miRBase:MI0016065 11 - microRNA 3664 miscRNA MIR3664 microRNA 3664 O - 20121230 -9606 100500845 MIR642B - - HGNC:38902|miRBase:MI0016685 19 - microRNA 642b miscRNA MIR642B microRNA 642b O - 20121230 -9606 100500846 MIR3689A - - HGNC:38904|miRBase:MI0016090 9 - microRNA 3689a miscRNA MIR3689A microRNA 3689a O - 20121230 -9606 100500847 MIR3615 - - HGNC:38905|miRBase:MI0016005 17 - microRNA 3615 miscRNA MIR3615 microRNA 3615 O - 20121230 -9606 100500848 MIR3673 - - HGNC:38908|miRBase:MI0016074 8 - microRNA 3673 miscRNA MIR3673 microRNA 3673 O - 20120318 -9606 100500849 MIR3916 - - HGNC:38912|miRBase:MI0016422 1 - microRNA 3916 miscRNA MIR3916 microRNA 3916 O - 20121230 -9606 100500850 MIR3682 - - HGNC:38916|miRBase:MI0016083 2 - microRNA 3682 miscRNA MIR3682 microRNA 3682 O - 20121230 -9606 100500851 MIR3918 - - HGNC:38919|miRBase:MI0016424 6 - microRNA 3918 miscRNA MIR3918 microRNA 3918 O - 20121230 -9606 100500852 MIR3180-4 - - HGNC:38920|miRBase:MI0016408 16 - microRNA 3180-4 miscRNA MIR3180-4 microRNA 3180-4 O - 20121209 -9606 100500853 MIR3605 - - HGNC:38922|miRBase:MI0015995 1 - microRNA 3605 miscRNA MIR3605 microRNA 3605 O - 20121230 -9606 100500854 MIR3671 - - HGNC:38925|miRBase:MI0016072 1 - microRNA 3671 miscRNA MIR3671 microRNA 3671 O - 20121230 -9606 100500855 MIR3713 - - HGNC:38926|miRBase:MI0016134 15 - microRNA 3713 miscRNA MIR3713 microRNA 3713 O - 20121230 -9606 100500856 MIR548Z - - HGNC:38929|miRBase:MI0016688 12 - microRNA 548z miscRNA MIR548Z microRNA 548z O - 20121230 -9606 100500857 MIR3939 - - HGNC:38931|miRBase:MI0016596 6 - microRNA 3939 miscRNA MIR3939 microRNA 3939 O - 20121230 -9606 100500858 MIR3622A - - HGNC:38934|miRBase:MI0016013 8 - microRNA 3622a miscRNA MIR3622A microRNA 3622a O - 20121230 -9606 100500859 MIR3921 - - HGNC:38936|miRBase:MI0016428 3 - microRNA 3921 miscRNA MIR3921 microRNA 3921 O - 20121230 -9606 100500860 MIR3618 - - HGNC:38937|miRBase:MI0016008 22 - microRNA 3618 miscRNA MIR3618 microRNA 3618 O - 20121230 -9606 100500861 MIR3665 - - HGNC:38939|miRBase:MI0016066 13 - microRNA 3665 miscRNA MIR3665 microRNA 3665 O - 20121230 -9606 100500862 MIR3648 - - HGNC:38941|miRBase:MI0016048 21 - microRNA 3648 miscRNA MIR3648 microRNA 3648 O - 20121230 -9606 100500863 MIR548AA1 - - HGNC:38944|miRBase:MI0016689 8 - microRNA 548aa-1 miscRNA MIR548AA1 microRNA 548aa-1 O - 20121230 -9606 100500864 MIR3929 - - HGNC:38945|miRBase:MI0016439 18 - microRNA 3929 miscRNA MIR3929 microRNA 3929 O - 20121230 -9606 100500865 MIR3936 - - HGNC:38947|miRBase:MI0016592 5 - microRNA 3936 miscRNA MIR3936 microRNA 3936 O - 20121230 -9606 100500866 MIR3941 - - HGNC:38949|miRBase:MI0016598 10 - microRNA 3941 miscRNA MIR3941 microRNA 3941 O - 20121230 -9606 100500867 MIR3684 - - HGNC:38950|miRBase:MI0016085 4 - microRNA 3684 miscRNA MIR3684 microRNA 3684 O - 20121230 -9606 100500868 MIR3913-2 - - HGNC:38953|miRBase:MI0016418 12 - microRNA 3913-2 miscRNA MIR3913-2 microRNA 3913-2 O - 20121230 -9606 100500869 MIR3672 - - HGNC:38957|miRBase:MI0016073 X - microRNA 3672 miscRNA MIR3672 microRNA 3672 O - 20121230 -9606 100500870 MIR3926-1 - - HGNC:38959|miRBase:MI0016434 8 - microRNA 3926-1 miscRNA MIR3926-1 microRNA 3926-1 O - 20121230 -9606 100500871 MIR3622B - - HGNC:38961|miRBase:MI0016014 8 - microRNA 3622b miscRNA MIR3622B microRNA 3622b O - 20121230 -9606 100500872 MIR3911 - - HGNC:38962|miRBase:MI0016415 9 - microRNA 3911 miscRNA MIR3911 microRNA 3911 O - 20121230 -9606 100500873 MIR3934 - - HGNC:38965|miRBase:MI0016590 6 - microRNA 3934 miscRNA MIR3934 microRNA 3934 O - 20121230 -9606 100500874 MIR3669 - - HGNC:38968|miRBase:MI0016070 8 - microRNA 3669 miscRNA MIR3669 microRNA 3669 O - 20120318 -9606 100500875 MIR3938 - - HGNC:38972|miRBase:MI0016594 3 - microRNA 3938 miscRNA MIR3938 microRNA 3938 O - 20121230 -9606 100500876 MIR3675 - - HGNC:38973|miRBase:MI0016076 1 - microRNA 3675 miscRNA MIR3675 microRNA 3675 O - 20121230 -9606 100500877 MIR3923 - - HGNC:38978|miRBase:MI0016430 3 - microRNA 3923 miscRNA MIR3923 microRNA 3923 O - 20121230 -9606 100500878 MIR3679 - - HGNC:38979|miRBase:MI0016080 2 - microRNA 3679 miscRNA MIR3679 microRNA 3679 O - 20121230 -9606 100500879 MIR3668 - - HGNC:38982|miRBase:MI0016069 6 - microRNA 3668 miscRNA MIR3668 microRNA 3668 O - 20121230 -9606 100500880 MIR3662 - - HGNC:38983|miRBase:MI0016063 6 - microRNA 3662 miscRNA MIR3662 microRNA 3662 O - 20121230 -9606 100500881 MIR3688-1 - MIR3688 HGNC:38986|miRBase:MI0016089 4 - microRNA 3688-1 miscRNA MIR3688-1 microRNA 3688-1 O - 20121230 -9606 100500882 MIR3667 - - HGNC:38990|miRBase:MI0016068 22 - microRNA 3667 miscRNA MIR3667 microRNA 3667 O - 20121230 -9606 100500883 MIR550B1 - - HGNC:38992|miRBase:MI0016686 7 - microRNA 550b-1 miscRNA MIR550B1 microRNA 550b-1 O - 20121230 -9606 100500884 MIR3681 - - HGNC:38994|miRBase:MI0016082 2 - microRNA 3681 miscRNA MIR3681 microRNA 3681 O - 20121230 -9606 100500885 MIR3925 - - HGNC:38996|miRBase:MI0016433 6 - microRNA 3925 miscRNA MIR3925 microRNA 3925 O - 20121230 -9606 100500886 MIR3683 - - HGNC:38999|miRBase:MI0016084 7 - microRNA 3683 miscRNA MIR3683 microRNA 3683 O - 20121230 -9606 100500887 MIR676 - hsa-mir-676 HGNC:38880|miRBase:MI0016436 X - microRNA 676 miscRNA MIR676 microRNA 676 O - 20121230 -9606 100500888 MIR3940 - - HGNC:38893|miRBase:MI0016597 19 - microRNA 3940 miscRNA MIR3940 microRNA 3940 O - 20121230 -9606 100500889 MIR3657 - - HGNC:38906|miRBase:MI0016057 12 - microRNA 3657 miscRNA MIR3657 microRNA 3657 O - 20121230 -9606 100500890 MIR3611 - - HGNC:38914|miRBase:MI0016001 10 - microRNA 3611 miscRNA MIR3611 microRNA 3611 O - 20121230 -9606 100500891 MIR3935 - - HGNC:38918|miRBase:MI0016591 16 - microRNA 3935 miscRNA MIR3935 microRNA 3935 O - 20121230 -9606 100500892 MIR3676 - - HGNC:38927|miRBase:MI0016077 17 - microRNA 3676 miscRNA MIR3676 microRNA 3676 O - 20121230 -9606 100500893 MIR3663 - - HGNC:38958|miRBase:MI0016064 10 - microRNA 3663 miscRNA MIR3663 microRNA 3663 O - 20121230 -9606 100500894 MIR3690 - - HGNC:38967|miRBase:MI0016091 X|Y Xp22.32 and Yp11.3 microRNA 3690 miscRNA MIR3690 microRNA 3690 O - 20121230 -9606 100500895 MIR548AA2 - - HGNC:38921|miRBase:MI0016690 17 - microRNA 548aa-2 miscRNA MIR548AA2 microRNA 548aa-2 O - 20121230 -9606 100500896 MIR3666 - - HGNC:38940|miRBase:MI0016067 7 - microRNA 3666 miscRNA MIR3666 microRNA 3666 O - 20121230 -9606 100500897 MIR3617 - - HGNC:38977|miRBase:MI0016007 20 - microRNA 3617 miscRNA MIR3617 microRNA 3617 O - 20121230 -9606 100500898 MIR3927 - - HGNC:38901|miRBase:MI0016435 9 - microRNA 3927 miscRNA MIR3927 microRNA 3927 O - 20121230 -9606 100500899 MIR3692 - - HGNC:38885|miRBase:MI0016093 6 - microRNA 3692 miscRNA MIR3692 microRNA 3692 O - 20121230 -9606 100500900 MIR3691 - - HGNC:38909|miRBase:MI0016092 6 - microRNA 3691 miscRNA MIR3691 microRNA 3691 O - 20121230 -9606 100500901 MIR3928 - - HGNC:38933|miRBase:MI0016438 22 - microRNA 3928 miscRNA MIR3928 microRNA 3928 O - 20121230 -9606 100500902 MIR3910-2 - - HGNC:38952|miRBase:MI0016431 9 - microRNA 3910-2 miscRNA MIR3910-2 microRNA 3910-2 O - 20121230 -9606 100500903 MIR3913-1 - - HGNC:38884|miRBase:MI0016417 12 - microRNA 3913-1 miscRNA MIR3913-1 microRNA 3913-1 O - 20121230 -9606 100500904 MIR3942 - - HGNC:38976|miRBase:MI0016599 15 - microRNA 3942 miscRNA MIR3942 microRNA 3942 O - 20121230 -9606 100500905 MIR3661 - - HGNC:38892|miRBase:MI0016062 5 - microRNA 3661 miscRNA MIR3661 microRNA 3661 O - 20121230 -9606 100500906 MIR3689B - - HGNC:38924|miRBase:MI0016411 9 - microRNA 3689b miscRNA MIR3689B microRNA 3689b O - 20121230 -9606 100500907 MIR3150B - - HGNC:38938|miRBase:MI0016426 8 - microRNA 3150b miscRNA MIR3150B microRNA 3150b O - 20121230 -9606 100500908 MIR3613 - - HGNC:38964|miRBase:MI0016003 13 - microRNA 3613 miscRNA MIR3613 microRNA 3613 O - 20121230 -9606 100500909 MIR3908 - - HGNC:38991|miRBase:MI0016412 12 - microRNA 3908 miscRNA MIR3908 microRNA 3908 O - 20121230 -9606 100500910 MIR3670-1 - MIR3670|hsa-mir-3670-1 HGNC:38997|miRBase:MI0016071 16 - microRNA 3670-1 miscRNA MIR3670-1 microRNA 3670-1 O - 20121230 -9606 100500911 MIR3944 - - HGNC:38898|miRBase:MI0016601 10 - microRNA 3944 miscRNA MIR3944 microRNA 3944 O - 20121230 -9606 100500912 MIR3674 - - HGNC:38915|miRBase:MI0016075 8 - microRNA 3674 miscRNA MIR3674 microRNA 3674 O - 20121230 -9606 100500913 MIR3714 - - HGNC:38928|miRBase:MI0016135 3 - microRNA 3714 miscRNA MIR3714 microRNA 3714 O - 20121230 -9606 100500914 MIR3610 - - HGNC:38942|miRBase:MI0016000 8 - microRNA 3610 miscRNA MIR3610 microRNA 3610 O - 20121230 -9606 100500915 MIR3915 - - HGNC:38955|miRBase:MI0016420 X - microRNA 3915 miscRNA MIR3915 microRNA 3915 O - 20121230 -9606 100500916 MIR3180-5 - - HGNC:38969|miRBase:MI0016409 16 - microRNA 3180-5 miscRNA MIR3180-5 microRNA 3180-5 O - 20121230 -9606 100500917 MIR3680-1 - MIR3680|hsa-mir-3680-1 HGNC:38989|miRBase:MI0016081 16 - microRNA 3680-1 miscRNA MIR3680-1 microRNA 3680-1 O - 20121230 -9606 100500918 MIR3651 - - HGNC:38897|miRBase:MI0016051 9 - microRNA 3651 miscRNA MIR3651 microRNA 3651 O - 20121230 -9606 100500919 MIR548Y - - HGNC:38980|miRBase:MI0016595 14 - microRNA 548y miscRNA MIR548Y microRNA 548y O - 20121230 -9606 100500920 MIR3914-2 - - HGNC:38975|miRBase:MI0016421 7 - microRNA 3914-2 miscRNA MIR3914-2 microRNA 3914-2 O - 20121230 -9606 100500934 LOC100500934 - - - 5 5q14 ring-box 1, E3 ubiquitin protein ligase pseudogene pseudo - - - - 20121230 -9606 100500938 CCDC179 - - HGNC:44653|Ensembl:ENSG00000255359|Vega:OTTHUMG00000166074 11 11p14.2 coiled-coil domain containing 179 protein-coding CCDC179 coiled-coil domain containing 179 O uncharacterized protein LOC100500938 20121230 -9606 100502567 DEL15Q24 - CHR15DELq24 MIM:613406 15 15q24 Chromosome 15q24 deletion syndrome unknown - - - - 20120622 -9606 100502568 STQTL21 - - MIM:613440 2 2q37.1 Stature QTL 21 unknown - - - - 20120622 -9606 100502569 BWQTL2 - - MIM:613459 3 3q25 Birth weight QTL 2 unknown - - - - 20120622 -9606 100502572 LOC100502572 - - - 5 5q35 chromosome 5 open reading frame 60 pseudogene pseudo - - - - 20121230 -9606 100505381 MMD2 - - MIM:613318 10 10p Miyoshi muscular dystrophy 2 unknown - - - - 20120318 -9606 100505383 BPIFB5P - - HGNC:42177 20 - BPI fold containing family B, member 5, pseudogene pseudo BPIFB5P BPI fold containing family B, member 5, pseudogene O - 20121230 -9606 100505385 IQCJ-SCHIP1 - - HGNC:38842|Ensembl:ENSG00000250588|Vega:OTTHUMG00000162426 3 - IQCJ-SCHIP1 readthrough protein-coding IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough O IQ motif containing J-schwannomin interacting protein 1 fusion protein|IQ motif containing J-schwannomin interacting protein 1 read-through transcript 20121230 -9606 100505389 DELXP21 - CXDELp21 MIM:300679 X Xp21 Chromosome Xp21 deletion syndrome unknown - - - - 20120622 -9606 100505390 AAA2 - - MIM:609782 4 4q31 Aortic aneurysm, familial abdominal 2 unknown - - - - 20120622 -9606 100505391 DEL6Q24Q25 - C6DELq25q25 MIM:612863 6 6q24-q25 Chromosome 6q25-q25 deletion syndrome unknown - - - - 20120622 -9606 100505392 DEL14Q11Q22 - C14DELq11q22 MIM:613457 14 14q11-q22 Chromosome 14q11-q22 deletion syndrome unknown - - - - 20120622 -9606 100505393 DUP16P13.3 - C16DUPq13.3 MIM:613458 16 16p13.3 Chromosome 16p13.3 duplication syndrome unknown - - - - 20120622 -9606 100505394 EDSS2 - - MIM:613576 7 7p21.2-p14.3 Ectodermal dysplasia-syndactyly syndrome 2 unknown - - - - 20120622 -9606 100505471 LOC100505471 - - - 2 - putative uncharacterized protein encoded by LINC00269-like pseudo - - - - 20121209 -9606 100505472 LOC100505472 - - - 2 - uncharacterized LOC100505472 pseudo - - - - 20121209 -9606 100505474 LOC100505474 - - - 18 - uncharacterized LOC100505474 miscRNA - - - - 20121230 -9606 100505475 SYNE1-AS1 - - HGNC:40793 6 - SYNE1 antisense RNA 1 miscRNA SYNE1-AS1 SYNE1 antisense RNA 1 O - 20121230 -9606 100505477 T1560 - - - 8 8q12.1 T1560 protein other - - - - 20120710 -9606 100505478 LOC100505478 - - - 9 9q32 uncharacterized LOC100505478 protein-coding - - - uncharacterized protein LOC100505478 20121230 -9606 100505483 PRKAG2-AS1 - - HGNC:40468 7 - PRKAG2 antisense RNA 1 miscRNA PRKAG2-AS1 PRKAG2 antisense RNA 1 O - 20121230 -9606 100505491 LOC100505491 - - - 4 - uncharacterized LOC100505491 miscRNA - - - - 20121209 -9606 100505494 ANKRD10-IT1 - - HGNC:39891 13 - ANKRD10 intronic transcript 1 (non-protein coding) miscRNA ANKRD10-IT1 ANKRD10 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100505495 LOC100505495 - - - 19 - uncharacterized LOC100505495 miscRNA - - - - 20121230 -9606 100505496 LOC100505496 - - - 19 - zinc finger protein ENSP00000375192-like pseudo - - - - 20121209 -9606 100505498 LOC100505498 - - - 2 - uncharacterized LOC100505498 miscRNA - - - - 20121209 -9606 100505501 LOC100505501 - - - 8 - uncharacterized LOC100505501 unknown - - - - 20121230 -9606 100505502 LOC100505502 - - - 10 10p11.22 putative UPF0607 protein FLJ37424-like unknown - - - - 20121230 -9606 100505503 RPS17L - - HGNC:40029|Ensembl:ENSG00000182774|Vega:OTTHUMG00000147355 15 - ribosomal protein S17-like protein-coding RPS17L ribosomal protein S17-like O 40S ribosomal protein S17-like 20121230 -9606 100505504 LOC100505504 - - - 11 - uncharacterized LOC100505504 miscRNA - - - - 20121209 -9606 100505506 BANF1P3 - - HGNC:43883 2 - barrier to autointegration factor 1 pseudogene 3 pseudo BANF1P3 barrier to autointegration factor 1 pseudogene 3 O - 20121230 -9606 100505515 LOC100505515 - - - 20 - uncharacterized LOC100505515 miscRNA - - - - 20121209 -9606 100505518 LOC100505518 - - - 13 - uncharacterized LOC100505518 miscRNA - - - - 20121230 -9606 100505519 LOC100505519 - - - 6 - uncharacterized LOC100505519 miscRNA - - - - 20121209 -9606 100505524 LOC100505524 - - - 11 11q13 chromosome 5 open reading frame 63 pseudogene pseudo - - - - 20121230 -9606 100505530 FLJ45825 hCG_2045734 - - 6 - uncharacterized LOC100505530 unknown - - - - 20121230 -9606 100505532 LOC100505532 - - - 8 - uncharacterized LOC100505532 miscRNA - - - - 20121230 -9606 100505534 LOC100505534 - - - 15 - uncharacterized LOC100505534 miscRNA - - - - 20121209 -9606 100505536 ISM1-AS1 - - HGNC:44313 20 - ISM1 antisense RNA 1 miscRNA ISM1-AS1 ISM1 antisense RNA 1 O - 20121230 -9606 100505538 RBM26-AS1 - - HGNC:39805 13 - RBM26 antisense RNA 1 miscRNA RBM26-AS1 RBM26 antisense RNA 1 O - 20121230 -9606 100505540 LOC100505540 - - - 10 - uncharacterized LOC100505540 miscRNA - - - - 20121230 -9606 100505543 LOC100505543 - - - 17 - uncharacterized LOC100505543 miscRNA - - - - 20121209 -9606 100505545 LOC100505545 - - - 4 - uncharacterized LOC100505545 miscRNA - - - - 20121230 -9606 100505547 LOC100505547 - - - 3 - uncharacterized LOC100505547 miscRNA - - - - 20121209 -9606 100505549 LOC100505549 - - - 18 - uncharacterized LOC100505549 protein-coding - - - uncharacterized protein LOC100505549 20121230 -9606 100505550 LOC100505550 - - - 6 - uncharacterized LOC100505550 miscRNA - - - - 20121209 -9606 100505555 LOC100505555 - - - 19 - uncharacterized LOC100505555 miscRNA - - - - 20121209 -9606 100505557 LOC100505557 - - - 3 - glutathione S-transferase mu 2 (muscle) pseudogene pseudo - - - - 20121230 -9606 100505558 LOC100505558 - - - 13 - uncharacterized LOC100505558 pseudo - - - - 20121209 -9606 100505561 LOC100505561 - - - 10 - uncharacterized LOC100505561 miscRNA - - - - 20121209 -9606 100505564 LOC100505564 - - - 16 - uncharacterized LOC100505564 unknown - - - - 20121230 -9606 100505566 LINC00578 - - HGNC:43807 3 - long intergenic non-protein coding RNA 578 miscRNA LINC00578 long intergenic non-protein coding RNA 578 O - 20121230 -9606 100505567 BTBD9-AS1 - - HGNC:40959 6 - BTBD9 antisense RNA 1 miscRNA BTBD9-AS1 BTBD9 antisense RNA 1 O - 20121021 -9606 100505570 LOC100505570 - - - 11 - uncharacterized LOC100505570 miscRNA - - - - 20121209 -9606 100505573 LOC100505573 - - - 15 - uncharacterized LOC100505573 miscRNA - - - - 20121209 -9606 100505576 LINC00672 - - HGNC:44353 17 - long intergenic non-protein coding RNA 672 miscRNA LINC00672 long intergenic non-protein coding RNA 672 O - 20121230 -9606 100505583 LINC00838 - - HGNC:44963 10 - long intergenic non-protein coding RNA 838 miscRNA LINC00838 long intergenic non-protein coding RNA 838 O - 20121230 -9606 100505585 LOC100505585 - - - 19 - uncharacterized LOC100505585 miscRNA - - - - 20121209 -9606 100505588 LOC100505588 - - - 9 - uncharacterized LOC100505588 miscRNA - - - - 20121209 -9606 100505591 LRRC3C hCG_2044133 - HGNC:40034|Ensembl:ENSG00000204913|Vega:OTTHUMG00000179521 17 17q12-q21.1 leucine rich repeat containing 3C protein-coding LRRC3C leucine rich repeat containing 3C O leucine-rich repeat-containing protein 3C|putative LRRC3-like protein ENSP00000367157 20121230 -9606 100505592 LOC100505592 - - - 18 - uncharacterized LOC100505592 miscRNA - - - - 20121209 -9606 100505594 LOC100505594 - - - 19 - uncharacterized LOC100505594 miscRNA - - - - 20121209 -9606 100505596 LOC100505596 - - - 4 - uncharacterized LOC100505596 miscRNA - - - - 20121209 -9606 100505598 PEX5L-AS2 - - HGNC:41252 3 - PEX5L antisense RNA 2 miscRNA PEX5L-AS2 PEX5L antisense RNA 2 O - 20121021 -9606 100505601 PARD3-AS1 - - HGNC:44964 10 - PARD3 antisense RNA 1 miscRNA PARD3-AS1 PARD3 antisense RNA 1 O - 20121227 -9606 100505609 LOC100505609 - - - 3 - uncharacterized LOC100505609 miscRNA - - - - 20121209 -9606 100505610 LINC00422 - - HGNC:42757 13 - long intergenic non-protein coding RNA 422 miscRNA LINC00422 long intergenic non-protein coding RNA 422 O - 20121021 -9606 100505613 LOC100505613 - - - 8 - uncharacterized LOC100505613 miscRNA - - - - 20121209 -9606 100505616 LOC100505616 - - - 15 - uncharacterized LOC100505616 miscRNA - - - - 20121209 -9606 100505619 LOC100505619 - - - 16 - uncharacterized LOC100505619 miscRNA - - - - 20121230 -9606 100505620 LOC100505620 - - - 17 - uncharacterized LOC100505620 unknown - - - - 20121230 -9606 100505621 C11orf72 hCG_1779686 - HGNC:26915 11 11q13.2 chromosome 11 open reading frame 72 other C11orf72 chromosome 11 open reading frame 72 O - 20121021 -9606 100505622 LOC100505622 - - - 19 - uncharacterized LOC100505622 miscRNA - - - - 20121230 -9606 100505624 LOC100505624 - - - 2 2p23.3 uncharacterized LOC100505624 miscRNA - - - - 20121230 -9606 100505625 LOC100505625 - - - 5 - uncharacterized LOC100505625 miscRNA - - - - 20120511 -9606 100505630 LOC100505630 - - - 1 - uncharacterized LOC100505630 miscRNA - - - - 20121209 -9606 100505633 LOC100505633 - - - 1 1q21-q23 uncharacterized LOC100505633 miscRNA - - - - 20121230 -9606 100505634 LOC100505634 - - - 2 - uncharacterized LOC100505634 miscRNA - - - - 20121209 -9606 100505635 LOC100505635 - - - 6 - uncharacterized LOC100505635 miscRNA - - - - 20121230 -9606 100505636 LOC100505636 - - - 5 - uncharacterized LOC100505636 miscRNA - - - - 20121230 -9606 100505639 LOC100505639 - - - 19 - uncharacterized LOC100505639 miscRNA - - - - 20121209 -9606 100505641 FGD5-AS1 - - HGNC:40410 3 - FGD5 antisense RNA 1 miscRNA FGD5-AS1 FGD5 antisense RNA 1 O - 20121230 -9606 100505642 LOC100505642 - - - 3 - chromosome 9 open reading frame 85 pseudogene pseudo - - - - 20121230 -9606 100505645 LOC100505645 - - - 12 - uncharacterized LOC100505645 miscRNA - - - - 20121209 -9606 100505648 LOC100505648 - - - 15 15q15.1 uncharacterized LOC100505648 miscRNA - - - - 20121230 -9606 100505650 LOC100505650 - - - 1 - uncharacterized LOC100505650 miscRNA - - - - 20121209 -9606 100505651 LOC100505651 - - - 20 - uncharacterized LOC100505651 miscRNA - - - - 20121209 -9606 100505658 LOC100505658 - - - 5 - uncharacterized LOC100505658 miscRNA - - - - 20121230 -9606 100505659 LOC100505659 - - - 8 - uncharacterized LOC100505659 miscRNA - - - - 20121230 -9606 100505663 LOC100505663 - - - 20 - uncharacterized LOC100505663 miscRNA - - - - 20121209 -9606 100505664 LOC100505664 - - - 20 - uncharacterized LOC100505664 miscRNA - - - - 20121209 -9606 100505666 LOC100505666 - - - 1 - uncharacterized LOC100505666 miscRNA - - - - 20121230 -9606 100505667 LOC100505667 - - - 2 - uncharacterized LOC100505667 pseudo - - - - 20121209 -9606 100505669 LOC100505669 - - - 7 - uncharacterized LOC100505669 miscRNA - - - - 20121209 -9606 100505676 LOC100505676 - - - 8 - uncharacterized LOC100505676 miscRNA - - - - 20121230 -9606 100505678 STARD4-AS1 - - HGNC:44117 5 5q22.1 STARD4 antisense RNA 1 miscRNA STARD4-AS1 STARD4 antisense RNA 1 O - 20121230 -9606 100505679 LOC100505679 - - Ensembl:ENSG00000259511|Vega:OTTHUMG00000172496 15 - uncharacterized LOC100505679 protein-coding - - - uncharacterized protein LOC100505679 20121230 -9606 100505681 NAPA-AS1 - - HGNC:44118 19 - NAPA antisense RNA 1 miscRNA NAPA-AS1 NAPA antisense RNA 1 O - 20121230 -9606 100505683 LOC100505683 - - - 20 - uncharacterized LOC100505683 miscRNA - - - - 20121209 -9606 100505685 LOC100505685 - - - 4 - uncharacterized LOC100505685 miscRNA - - - - 20121209 -9606 100505687 LOC100505687 - - - 3 - uncharacterized LOC100505687 miscRNA - - - - 20121230 -9606 100505690 LOC100505690 - - - 1 - thioredoxin 2 pseudogene pseudo - - - - 20121230 -9606 100505692 FTO-IT1 - - HGNC:43758 16 - FTO intronic transcript 1 (non-protein coding) miscRNA FTO-IT1 FTO intronic transcript 1 (non-protein coding) O - 20121230 -9606 100505694 LOC100505694 - - - 2 - family with sequence similarity 133, member A pseudogene pseudo - - - - 20121230 -9606 100505695 LOC100505695 - - - 2 2q31.1 uncharacterized LOC100505695 miscRNA - - - - 20121230 -9606 100505696 SH3BP5-AS1 - - HGNC:44501 3 3p25.1 SH3BP5 antisense RNA 1 miscRNA SH3BP5-AS1 SH3BP5 antisense RNA 1 O - 20121230 -9606 100505697 LOC100505697 - - - 6 - uncharacterized LOC100505697 miscRNA - - - - 20121209 -9606 100505702 LOC100505702 - - - 4 - uncharacterized LOC100505702 miscRNA - - - - 20121230 -9606 100505704 ATP5G1P6 - - HGNC:39509 18 18q21.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 6 pseudo ATP5G1P6 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 6 O - 20121230 -9606 100505705 SDIM1 - - HGNC:38749 6 - stress responsive DNAJB4 interacting membrane protein 1 unknown SDIM1 stress responsive DNAJB4 interacting membrane protein 1 O - 20121230 -9606 100505710 LOC100505710 - - - 3 - uncharacterized LOC100505710 miscRNA - - - - 20121209 -9606 100505711 LOC100505711 - - - 6 - uncharacterized LOC100505711 miscRNA - - - - 20121209 -9606 100505715 LOC100505715 - - - 19 - uncharacterized LOC100505715 miscRNA - - - - 20121230 -9606 100505716 LOC100505716 - - - 2 2p23 uncharacterized LOC100505716 miscRNA - - - - 20121230 -9606 100505718 LOC100505718 - - - 8 - uncharacterized LOC100505718 miscRNA - - - - 20121230 -9606 100505722 LOC100505722 - - - 16 - uncharacterized LOC100505722 miscRNA - - - - 20121209 -9606 100505724 KRTAP9-7 - KAP9.7|KRTAP9L1 HGNC:18915|Ensembl:ENSG00000180386|Vega:OTTHUMG00000133605 17 17q21.2 keratin associated protein 9-7 protein-coding KRTAP9-7 keratin associated protein 9-7 O Putative keratin-associated protein 9-2-like 1|keratin associated protein 9-like 1 20121230 -9606 100505727 LOC100505727 - - - 21 - uncharacterized LOC100505727 miscRNA - - - - 20121209 -9606 100505728 LOC100505728 - - - 1 - uncharacterized LOC100505728 unknown - - - - 20120511 -9606 100505729 LOC100505729 - - - 3 - uncharacterized LOC100505729 miscRNA - - - - 20121209 -9606 100505735 LOC100505735 - - - 20 - uncharacterized LOC100505735 miscRNA - - - - 20121209 -9606 100505736 LOC100505736 - - - 2 2p23.2 uncharacterized LOC100505736 miscRNA - - - - 20121230 -9606 100505738 LOC100505738 - - - 5 - uncharacterized LOC100505738 miscRNA - - - - 20121230 -9606 100505739 LOC100505739 - - - 8 - uncharacterized LOC100505739 miscRNA - - - - 20121209 -9606 100505741 SPATA1 RP11-118B23.4 SP-2|SPAP1 HGNC:14682 1 1p22.3 spermatogenesis associated 1 protein-coding SPATA1 spermatogenesis associated 1 O sperm-specific protein SP-2|spermatogenesis associated protein 1|spermatogenesis-associated protein 1 20121230 -9606 100505746 ITGB2-AS1 - - HGNC:44304 21 - ITGB2 antisense RNA 1 miscRNA ITGB2-AS1 ITGB2 antisense RNA 1 O - 20121230 -9606 100505753 KRTAP16-1 hCG_2043352 KAP16.1 HGNC:18916|Ensembl:ENSG00000212657|Vega:OTTHUMG00000133640 17 17q21.2 keratin associated protein 16-1 protein-coding KRTAP16-1 keratin associated protein 16-1 O keratin-associated protein 16-1|putative keratin-associated protein 10-like ENSP00000375147 20121230 -9606 100505754 LOC100505754 - - - 19 - uncharacterized LOC100505754 miscRNA - - - - 20121209 -9606 100505755 MTND5P28 - - HGNC:42290 2 2q14.2 MT-ND5 pseudogene 28 pseudo MTND5P28 MT-ND5 pseudogene 28 O - 20121230 -9606 100505758 PRMT5-AS1 - - HGNC:40533 14 - PRMT5 antisense RNA 1 miscRNA PRMT5-AS1 PRMT5 antisense RNA 1 O - 20121230 -9606 100505759 LOC100505759 - - - 12 - uncharacterized LOC100505759 miscRNA - - - - 20120511 -9606 100505761 LOC100505761 - - - 10 - uncharacterized LOC100505761 miscRNA - - - - 20121230 -9606 100505767 LOC100505767 - - - 7 - putative speedy protein-like protein 2-like protein-coding - - - speedy protein E3-like 20121209 -9606 100505768 LOC100505768 - - - 1 - uncharacterized LOC100505768 miscRNA - - - - 20121230 -9606 100505771 LOC100505771 - - - 20 - uncharacterized LOC100505771 miscRNA - - - - 20121209 -9606 100505774 LOC100505774 - - - 2 - uncharacterized LOC100505774 miscRNA - - - - 20121209 -9606 100505775 LOC100505775 - - - 8 - uncharacterized LOC100505775 miscRNA - - - - 20121209 -9606 100505776 LOC100505776 - - - 18 - uncharacterized LOC100505776 miscRNA - - - - 20121230 -9606 100505781 LOC100505781 - - - 9 - protein FAM27D1-like protein-coding - - - protein FAM27E2-like 20121209 -9606 100505782 LOC100505782 - - - 17 - uncharacterized LOC100505782 miscRNA - - - - 20121230 -9606 100505783 LOC100505783 - - - 20 - uncharacterized LOC100505783 miscRNA - - - - 20121230 -9606 100505784 LOC100505784 - - - 4 - uncharacterized LOC100505784 miscRNA - - - - 20121209 -9606 100505785 KIRREL-IT1 - - HGNC:41412 1 1q23.1 KIRREL intronic transcript 1 (non-protein coding) unknown KIRREL-IT1 KIRREL intronic transcript 1 (non-protein coding) O - 20121230 -9606 100505786 LOC100505786 - - - 3 - uncharacterized LOC100505786 miscRNA - - - - 20121209 -9606 100505788 LOC100505788 - - - 1 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa pseudogene pseudo - - - - 20121230 -9606 100505794 LOC100505794 - - - 1 - uncharacterized LOC100505794 miscRNA - - - - 20121209 -9606 100505795 LOC100505795 - - - 1 - uncharacterized LOC100505795 miscRNA - - - - 20121230 -9606 100505796 LOC100505796 - - - 5 - protein IMPACT-like protein-coding - - - - 20120825 -9606 100505797 LOC100505797 - - - 18 - uncharacterized LOC100505797 miscRNA - - - - 20121209 -9606 100505798 LOC100505798 - - - 5 - uncharacterized LOC100505798 protein-coding - - - - 20120318 -9606 100505799 LOC100505799 - - - 1 - uncharacterized LOC100505799 miscRNA - - - - 20121209 -9606 100505806 LOC100505806 - - - 5 - uncharacterized LOC100505806 miscRNA - - - - 20121230 -9606 100505811 LOC100505811 - - - 5 - uncharacterized LOC100505811 miscRNA - - - - 20121209 -9606 100505812 LOC100505812 - - - 19 - uncharacterized LOC100505812 miscRNA - - - - 20121230 -9606 100505817 LOC100505817 - - - 18 - uncharacterized LOC100505817 miscRNA - - - - 20121230 -9606 100505821 LOC100505821 - - - 1 - uncharacterized LOC100505821 miscRNA - - - - 20121209 -9606 100505822 LOC100505822 - - - 5 - uncharacterized LOC100505822 miscRNA - - - - 20121209 -9606 100505824 LOC100505824 - - - 1 - uncharacterized LOC100505824 miscRNA - - - - 20121209 -9606 100505826 STK4-AS1 - - HGNC:43811 20 - STK4 antisense RNA 1 (head to head) miscRNA STK4-AS1 STK4 antisense RNA 1 (head to head) O - 20121230 -9606 100505827 LOC100505827 - - - 21 - uncharacterized LOC100505827 miscRNA - - - - 20121209 -9606 100505828 LOC100505828 - - - 1 - uncharacterized LOC100505828 miscRNA - - - - 20121209 -9606 100505832 PROX1-AS1 - - HGNC:43656 1 1q32.3 PROX1 antisense RNA 1 miscRNA PROX1-AS1 PROX1 antisense RNA 1 O - 20121021 -9606 100505834 LOC100505834 - - - 11 - uncharacterized LOC100505834 miscRNA - - - - 20121209 -9606 100505835 LOC100505835 - - - 19 - uncharacterized LOC100505835 miscRNA - - - - 20121230 -9606 100505836 LOC100505836 - - - 3 - uncharacterized LOC100505836 protein-coding - - - - 20121230 -9606 100505839 LOC100505839 - - - 10 - uncharacterized LOC100505839 miscRNA - - - - 20121230 -9606 100505840 LOC100505840 - - - 1 - uncharacterized LOC100505840 miscRNA - - - - 20121209 -9606 100505841 LOC100505841 - - - 5 5q23.2 zinc finger protein 474-like protein-coding - - - uncharacterized protein LOC100505841 20121230 -9606 100505845 ROPN1L-AS1 - - HGNC:39984 5 5p15.2 ROPN1L antisense RNA 1 miscRNA ROPN1L-AS1 ROPN1L antisense RNA 1 O - 20121230 -9606 100505848 LOC100505848 hCG_2036644 - - 11 - uncharacterized LOC100505848 unknown - - - - 20120622 -9606 100505851 LOC100505851 - - - 19 - uncharacterized LOC100505851 unknown - - - - 20121230 -9606 100505852 ZNF355P PRED65 ZNF834 HGNC:17218 21 21q11.2 zinc finger protein 355, pseudogene pseudo ZNF355P zinc finger protein 355, pseudogene O - 20121230 -9606 100505853 LOC100505853 - - - 18 - uncharacterized LOC100505853 miscRNA - - - - 20121209 -9606 100505854 RSBN1L-AS1 - - HGNC:44173 7 - RSBN1L antisense RNA 1 miscRNA RSBN1L-AS1 RSBN1L antisense RNA 1 O - 20121230 -9606 100505855 LOC100505855 - - - 9 - eukaryotic translation initiation factor 1 pseudogene pseudo - - - - 20121230 -9606 100505862 LOC100505862 - - - 6 - uncharacterized LOC100505862 miscRNA - - - - 20121209 -9606 100505863 LOC100505863 - - - 7 - uncharacterized LOC100505863 miscRNA - - - - 20121209 -9606 100505865 LOC100505865 - - - 16 - uncharacterized LOC100505865 miscRNA - - - - 20121230 -9606 100505869 LOC100505869 - - - 10 - uncharacterized LOC100505869 miscRNA - - - - 20121209 -9606 100505870 LOC100505870 - - - 11 - uncharacterized LOC100505870 unknown - - - - 20121230 -9606 100505873 LOC100505873 - - - 17 - putative protein FAM215A-like pseudo - - - - 20121209 -9606 100505874 LOC100505874 - - - Un - uncharacterized LOC100505874 miscRNA - - - - 20121209 -9606 100505875 LOC100505875 - - - 4 - uncharacterized LOC100505875 miscRNA - - - - 20121230 -9606 100505876 LOC100505876 - - - 2 2p22 uncharacterized LOC100505876 miscRNA - - - - 20121230 -9606 100505877 UBE2E2-AS1 - - HGNC:44512 3 - UBE2E2 antisense RNA 1 (head to head) miscRNA UBE2E2-AS1 UBE2E2 antisense RNA 1 (head to head) O - 20121209 -9606 100505878 LOC100505878 - - - 5 - uncharacterized LOC100505878 miscRNA - - - - 20121209 -9606 100505879 KIF25-AS1 hCG_15383 C6orf54|HGC6.1.1|NCRNA00300 HGNC:20953 6 6q27 KIF25 antisense RNA 1 miscRNA KIF25-AS1 KIF25 antisense RNA 1 O - 20121230 -9606 100505881 MAGI2-AS3 - - HGNC:40862 7 - MAGI2 antisense RNA 3 miscRNA MAGI2-AS3 MAGI2 antisense RNA 3 O - 20121230 -9606 100505887 LOC100505887 - - - 1 - uncharacterized LOC100505887 miscRNA - - - - 20121209 -9606 100505890 LOC100505890 - - - 10 - uncharacterized LOC100505890 miscRNA - - - uncharacterized protein LOC100505890 20121230 -9606 100505892 CCNB1IP1P2 - - HGNC:37694 20 - cyclin B1 interacting protein 1 pseudogene 2 pseudo CCNB1IP1P2 cyclin B1 interacting protein 1 pseudogene 2 O - 20121230 -9606 100505893 SLIT2-IT1 hCG_2045574 - HGNC:41383 4 - SLIT2 intronic transcript 1 (non-protein coding) miscRNA SLIT2-IT1 SLIT2 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100505894 TMEM161B-AS1 - - HGNC:43839 5 - TMEM161B antisense RNA 1 miscRNA TMEM161B-AS1 TMEM161B antisense RNA 1 O - 20121230 -9606 100505902 LOC100505902 - - - 3 - uncharacterized LOC100505902 miscRNA - - - - 20121209 -9606 100505903 LOC100505903 - - - 6 - uncharacterized LOC100505903 miscRNA - - - - 20121209 -9606 100505904 LOC100505904 - - - 7 - uncharacterized LOC100505904 miscRNA - - - - 20121209 -9606 100505909 LOC100505909 - - - 17 - uncharacterized LOC100505909 miscRNA - - - - 20121209 -9606 100505911 SOS1-IT1 - - HGNC:41385 2 2p21 SOS1 intronic transcript 1 (non-protein coding) miscRNA SOS1-IT1 SOS1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100505912 LOC100505912 - - - 4 - uncharacterized LOC100505912 miscRNA - - - - 20121230 -9606 100505913 LOC100505913 - - - 7 - uncharacterized LOC100505913 miscRNA - - - - 20121209 -9606 100505915 LOC100505915 - - - 16 - uncharacterized LOC100505915 miscRNA - - - - 20120508 -9606 100505918 LOC100505918 - - - 1 1q23-q24 uncharacterized LOC100505918 miscRNA - - - - 20121230 -9606 100505919 CFL1P7 - - HGNC:39959 3 3p24 cofilin 1 (non-muscle) pseudogene 7 pseudo CFL1P7 cofilin 1 (non-muscle) pseudogene 7 O - 20121230 -9606 100505920 LOC100505920 - - - 3 - uncharacterized LOC100505920 miscRNA - - - - 20121209 -9606 100505921 LOC100505921 - - - 7 - uncharacterized LOC100505921 miscRNA - - - - 20121209 -9606 100505923 LOC100505923 - - - 12 - uncharacterized LOC100505923 unknown - - - - 20121230 -9606 100505929 C21orf37 hCG_1817258 - HGNC:1277 21 21q21.1 chromosome 21 open reading frame 37 miscRNA C21orf37 chromosome 21 open reading frame 37 O - 20121230 -9606 100505932 LOC100505932 - - - 7 - uncharacterized LOC100505932 unknown - - - - 20120726 -9606 100505933 LOC100505933 - - - 10 - uncharacterized LOC100505933 miscRNA - - - - 20121230 -9606 100505938 LOC100505938 - - - 7 - uncharacterized LOC100505938 miscRNA - - - - 20121230 -9606 100505940 LOC100505940 - - - 1 - uncharacterized LOC100505940 miscRNA - - - - 20121209 -9606 100505942 LOC100505942 - - - 16 - uncharacterized LOC100505942 miscRNA - - - - 20121209 -9606 100505945 BTF3L4P1 - - HGNC:39645 21 - basic transcription factor 3-like 4 pseudogene 1 pseudo BTF3L4P1 basic transcription factor 3-like 4 pseudogene 1 O - 20121230 -9606 100505946 LOC100505946 - - - 4 - uncharacterized LOC100505946 miscRNA - - - - 20121209 -9606 100505947 LOC100505947 - - - 3 - uncharacterized LOC100505947 miscRNA - - - - 20121209 -9606 100505948 LOC100505948 - - - 16 - uncharacterized LOC100505948 miscRNA - - - - 20121209 -9606 100505949 LOC100505949 - - - 5 - uncharacterized LOC100505949 miscRNA - - - - 20121209 -9606 100505951 LOC100505951 - - - 7 - uncharacterized LOC100505951 unknown - - - - 20120726 -9606 100505953 LOC100505953 - - - 11 11p15.5 capicua homolog (Drosophila) pseudogene pseudo - - - - 20121209 -9606 100505955 LOC100505955 - - - 1 - putative uncharacterized protein FLJ44672-like pseudo - - - - 20121209 -9606 100505964 LOC100505964 - - - 2 2p25 uncharacterized LOC100505964 miscRNA - - - - 20121230 -9606 100505967 LINC00645 - - HGNC:44299 14 - long intergenic non-protein coding RNA 645 miscRNA LINC00645 long intergenic non-protein coding RNA 645 O - 20121230 -9606 100505970 HEXDC-IT1 - - HGNC:43650 17 - HEXDC intronic transcript 1 (non-protein coding) miscRNA HEXDC-IT1 HEXDC intronic transcript 1 (non-protein coding) O - 20121230 -9606 100505973 LOC100505973 - - - 21 - uncharacterized LOC100505973 miscRNA - - - - 20121209 -9606 100505975 ENO1-AS1 - - HGNC:40214 1 1p36.2 ENO1 antisense RNA 1 miscRNA ENO1-AS1 ENO1 antisense RNA 1 O - 20121230 -9606 100505978 LOC100505978 - - - 12 - uncharacterized LOC100505978 miscRNA - - - - 20121230 -9606 100505982 LOC100505982 - - - 1 - ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo - - - - 20121230 -9606 100505983 LOC100505983 - - - 20 - uncharacterized LOC100505983 miscRNA - - - - 20121209 -9606 100505984 LOC100505984 - - - 2 - uncharacterized LOC100505984 miscRNA - - - - 20120318 -9606 100505985 LOC100505985 - - - 6 - uncharacterized LOC100505985 miscRNA - - - - 20121209 -9606 100505986 LOC100505986 - - - 9 - uncharacterized LOC100505986 miscRNA - - - - 20121209 -9606 100505989 LOC100505989 - - - 4 4q32 uncharacterized LOC100505989 miscRNA - - - - 20121230 -9606 100505991 LOC100505991 - - - 1 - uncharacterized LOC100505991 miscRNA - - - - 20121230 -9606 100505992 LOC100505992 - - - 3 - uncharacterized LOC100505992 pseudo - - - - 20121209 -9606 100505993 TMEM210 - - HGNC:34059|Ensembl:ENSG00000185863|Vega:OTTHUMG00000020981 9 9q34.3 transmembrane protein 210 protein-coding TMEM210 transmembrane protein 210 O - 20121230 -9606 100505994 LOC100505994 - - - 5 - uncharacterized LOC100505994 unknown - - - - 20121230 -9606 100505995 LOC100505995 - - - 7 - apoptosis-inducing, TAF9-like domain 1 pseudogene pseudo - - - - 20121230 -9606 100505996 LINC00403 - - HGNC:42733 13 - long intergenic non-protein coding RNA 403 miscRNA LINC00403 long intergenic non-protein coding RNA 403 O - 20121209 -9606 100505997 LOC100505997 - - - 12 - uncharacterized LOC100505997 miscRNA - - - - 20120511 -9606 100506000 LOC100506000 - - - 16 - heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100506001 NARF-OT1 - - HGNC:43651 17 - NARF overlapping transcript 1 (non-protein coding) miscRNA NARF-OT1 NARF overlapping transcript 1 (non-protein coding) O - 20121021 -9606 100506003 ZFY-AS1 - ZFY-AS|ZFYAS HGNC:38798 Y - ZFY antisense RNA 1 miscRNA ZFY-AS1 ZFY antisense RNA 1 O - 20121021 -9606 100506004 LOC100506004 - - - 14 - uncharacterized LOC100506004 miscRNA - - - - 20121209 -9606 100506007 LOC100506007 - - - 1 - uncharacterized LOC100506007 miscRNA - - - - 20121209 -9606 100506011 LOC100506011 - - - 1 - uncharacterized LOC100506011 miscRNA - - - - 20121209 -9606 100506012 PPP5D1 - - HGNC:44209|Ensembl:ENSG00000230510 19 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 O PPP5 TPR repeat domain-containing protein 1|protein PPP5D1 20121230 -9606 100506013 LOC100506013 - - - 4 4q32 uncharacterized LOC100506013 miscRNA - - - - 20121230 -9606 100506014 LOC100506014 - - - 2 - uncharacterized LOC100506014 miscRNA - - - - 20121209 -9606 100506016 LOC100506016 - - - 13 - uncharacterized LOC100506016 miscRNA - - - - 20121209 -9606 100506020 ARAP1-AS2 - - HGNC:39994 11 11q13.4 ARAP1 antisense RNA 2 miscRNA ARAP1-AS2 ARAP1 antisense RNA 2 O - 20121230 -9606 100506022 LOC100506022 - - - 1 - uncharacterized LOC100506022 miscRNA - - - - 20121209 -9606 100506023 LOC100506023 - - - 1 1q23-q25 uncharacterized LOC100506023 miscRNA - - - - 20121230 -9606 100506025 LOC100506025 - - - 7 - uncharacterized LOC100506025 miscRNA - - - - 20121230 -9606 100506029 LOC100506029 - - - 1 - uncharacterized LOC100506029 miscRNA - - - - 20121209 -9606 100506031 LOC100506031 - - - 16 - uncharacterized LOC100506031 unknown - - - - 20120622 -9606 100506033 PTOV1-AS1 - - HGNC:44174 19 - PTOV1 antisense RNA 1 miscRNA PTOV1-AS1 PTOV1 antisense RNA 1 O - 20121230 -9606 100506035 LOC100506035 - - - 4 4q21.21 uncharacterized LOC100506035 miscRNA - - - - 20121230 -9606 100506036 LOC100506036 - - - 2 - uncharacterized LOC100506036 miscRNA - - - - 20121209 -9606 100506038 LOC100506038 - - - 6 - uncharacterized LOC100506038 pseudo - - - - 20121209 -9606 100506039 HMGB3P8 - - HGNC:39300 10 10q25.3 high mobility group box 3 pseudogene 8 pseudo HMGB3P8 high mobility group box 3 pseudogene 8 O - 20121230 -9606 100506043 LOC100506043 - - - 17 - uncharacterized LOC100506043 pseudo - - - - 20121209 -9606 100506046 GAS5-AS1 - - HGNC:44119 1 - GAS5 antisense RNA 1 miscRNA GAS5-AS1 GAS5 antisense RNA 1 O - 20121230 -9606 100506047 LOC100506047 - - - 2 - uncharacterized LOC100506047 miscRNA - - - - 20121209 -9606 100506048 LOC100506048 - - - 4 - uncharacterized LOC100506048 miscRNA - - - - 20121209 -9606 100506049 LRRC72 - - HGNC:42972|Ensembl:ENSG00000205858|Vega:OTTHUMG00000152446 7 7p21.1 leucine rich repeat containing 72 protein-coding LRRC72 leucine rich repeat containing 72 O leucine-rich repeat-containing protein 72|leucine-rich repeat-containing protein ENSP00000371558 20121230 -9606 100506050 LOC100506050 - - - 7 - uncharacterized LOC100506050 miscRNA - - - - 20121230 -9606 100506051 LOC100506051 - - - 1 - uncharacterized LOC100506051 miscRNA - - - - 20121209 -9606 100506053 LOC100506053 - - - 20 - uncharacterized LOC100506053 miscRNA - - - - 20121209 -9606 100506054 LOC100506054 - - - 2 2p25 uncharacterized LOC100506054 miscRNA - - - - 20121230 -9606 100506055 LOC100506055 - - - 2 - matrix-remodelling associated 7 pseudogene pseudo - - - - 20121230 -9606 100506057 LOC100506057 - - - 10 - uncharacterized LOC100506057 miscRNA - - - - 20121209 -9606 100506058 LOC100506058 - - - 15 - eukaryotic translation initiation factor 5A2 pseudogene pseudo - - - - 20121230 -9606 100506059 LOC100506059 - - - 15 - uncharacterized LOC100506059 miscRNA - - - - 20121209 -9606 100506060 LOC100506060 - - - 16 16q22.1 SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100506061 BTF3L4P4 - - HGNC:39648 4 4q32.3 basic transcription factor 3-like 4 pseudogene 4 pseudo BTF3L4P4 basic transcription factor 3-like 4 pseudogene 4 O - 20121230 -9606 100506063 LOC100506063 - - - 13 - uncharacterized LOC100506063 miscRNA - - - - 20121209 -9606 100506068 DACT3-AS1 - - HGNC:44120 19 - DACT3 antisense RNA 1 miscRNA DACT3-AS1 DACT3 antisense RNA 1 O - 20121230 -9606 100506069 LOC100506069 - - - 20 - uncharacterized LOC100506069 miscRNA - - - - 20121209 -9606 100506070 LOC100506070 - - - 18 - uncharacterized LOC100506070 miscRNA - - - - 20121230 -9606 100506071 LOC100506071 - - - 14 - uncharacterized LOC100506071 miscRNA - - - - 20121230 -9606 100506075 LOC100506075 - - - 22 - uncharacterized LOC100506075 miscRNA - - - - 20121209 -9606 100506076 LOC100506076 - - - 2 - uncharacterized LOC100506076 miscRNA - - - - 20121209 -9606 100506077 LOC100506077 - - - 2 - uncharacterized LOC100506077 miscRNA - - - - 20120511 -9606 100506080 HMGA1P4 - - HGNC:39093 9 - high mobility group AT-hook 1 pseudogene 4 pseudo HMGA1P4 high mobility group AT-hook 1 pseudogene 4 O - 20121230 -9606 100506082 LOC100506082 - - - 11 - uncharacterized LOC100506082 miscRNA - - - - 20121230 -9606 100506083 LOC100506083 - - - 16 - uncharacterized LOC100506083 miscRNA - - - - 20121230 -9606 100506084 ARL17B PRO2667 ARL17|ARL17A HGNC:32387|Ensembl:ENSG00000228696|Vega:OTTHUMG00000178031 17 17q21.31 ADP-ribosylation factor-like 17B protein-coding ARL17B ADP-ribosylation factor-like 17B O ADP-ribosylation factor 7|ADP-ribosylation factor-like protein 17 20121230 -9606 100506085 LOC100506085 - - - 4 - uncharacterized LOC100506085 miscRNA - - - - 20121230 -9606 100506088 LOC100506088 - - - 2 - uncharacterized LOC100506088 miscRNA - - - - 20121209 -9606 100506089 LOC100506089 - - - 18 - uncharacterized LOC100506089 miscRNA - - - - 20121230 -9606 100506091 LOC100506091 - - - 6 - uncharacterized LOC100506091 miscRNA - - - - 20121209 -9606 100506098 LOC100506098 - - - 7 - uncharacterized LOC100506098 miscRNA - - - - 20121209 -9606 100506099 LOC100506099 - - - 12 - peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 100506100 LOC100506100 - - - 9 - uncharacterized LOC100506100 miscRNA - - - - 20121230 -9606 100506101 LOC100506101 - - - 11 - uncharacterized LOC100506101 miscRNA - - - - 20121209 -9606 100506102 LOC100506102 - - - 5 - uncharacterized LOC100506102 miscRNA - - - - 20121209 -9606 100506103 LOC100506103 - - - 9 - 6-pyruvoyltetrahydropterin synthase pseudogene pseudo - - - - 20121209 -9606 100506105 LOC100506105 - - - 16 - uncharacterized LOC100506105 miscRNA - - - - 20121209 -9606 100506107 LOC100506107 - - - 4 4q32-q34 uncharacterized LOC100506107 miscRNA - - - - 20121230 -9606 100506108 SIX3-AS1 - - HGNC:40532 2 - SIX3 antisense RNA 1 miscRNA SIX3-AS1 SIX3 antisense RNA 1 O - 20121230 -9606 100506110 LOC100506110 - - - 14 - uncharacterized LOC100506110 miscRNA - - - - 20121209 -9606 100506113 LOC100506113 - - - 11 - uncharacterized LOC100506113 miscRNA - - - - 20121209 -9606 100506114 LOC100506114 - - - 19 - uncharacterized LOC100506114 miscRNA - - - - 20121209 -9606 100506115 LOC100506115 - - - 20 - uncharacterized LOC100506115 miscRNA - - - - 20121230 -9606 100506119 LOC100506119 - - - 9 - uncharacterized LOC100506119 miscRNA - - - - 20121209 -9606 100506122 LOC100506122 - - - 4 4q32-q34 uncharacterized LOC100506122 miscRNA - - - - 20121230 -9606 100506123 LOC100506123 - - - 2 2q11 uncharacterized LOC100506123 miscRNA - - - - 20121230 -9606 100506124 LOC100506124 - - - 2 - uncharacterized LOC100506124 miscRNA - - - - 20121230 -9606 100506125 LOC100506125 - - - 12 - uncharacterized LOC100506125 miscRNA - - - - 20121209 -9606 100506126 LOC100506126 - - - 10 - uncharacterized LOC100506126 miscRNA - - - - 20121209 -9606 100506127 LOC100506127 - - Ensembl:ENSG00000179240|Vega:OTTHUMG00000165281 11 11q13.5 putative uncharacterized protein FLJ37770-like protein-coding - - - - 20121230 -9606 100506128 LOC100506128 - - - 1 - uncharacterized LOC100506128 miscRNA - - - - 20121209 -9606 100506133 LOC100506133 - - - 4 - ubiquitin-conjugating enzyme E2N pseudogene pseudo - - - - 20121230 -9606 100506134 LOC100506134 - - - 2 2q24 uncharacterized LOC100506134 miscRNA - - - - 20121230 -9606 100506136 LOC100506136 - - - 7 - uncharacterized LOC100506136 miscRNA - - - - 20121230 -9606 100506142 LOC100506142 - - - 2 2p21 uncharacterized LOC100506142 miscRNA - - - - 20120511 -9606 100506144 ZMYM6NB hCG_37762 - HGNC:40021|Ensembl:ENSG00000243749|Vega:OTTHUMG00000004158 1 1p34.3 ZMYM6 neighbor protein-coding ZMYM6NB ZMYM6 neighbor O ZMYM6 neighbor protein|uncharacterized protein ZMYM6NB 20121230 -9606 100506145 LOC100506145 - - - 1 - uncharacterized LOC100506145 pseudo - - - - 20121209 -9606 100506154 LOC100506154 - - - 4 - uncharacterized LOC100506154 miscRNA - - - - 20121209 -9606 100506155 LOC100506155 - - - 2 - uncharacterized LOC100506155 miscRNA - - - - 20120511 -9606 100506157 LOC100506157 - - - 14 - uncharacterized LOC100506157 miscRNA - - - - 20121209 -9606 100506159 LOC100506159 - - - 12 - uncharacterized LOC100506159 miscRNA - - - - 20121017 -9606 100506161 LOC100506161 - - - 1 - uncharacterized LOC100506161 miscRNA - - - - 20121209 -9606 100506164 HSFX1 hCG_27154 LW-1 HGNC:29603|Ensembl:ENSG00000171116|Vega:OTTHUMG00000022626 X Xq28 heat shock transcription factor family, X linked 1 protein-coding HSFX1 heat shock transcription factor family, X linked 1 O heat shock transcription factor, X-linked 20121230 -9606 100506165 LOC100506165 - - - 6 - uncharacterized LOC100506165 miscRNA - - - - 20121209 -9606 100506169 MTND5P11 - - HGNC:42273 5 5q31.1 MT-ND5 pseudogene 11 pseudo MTND5P11 MT-ND5 pseudogene 11 O - 20121230 -9606 100506172 LOC100506172 - - - 16 - uncharacterized LOC100506172 miscRNA - - - - 20121230 -9606 100506173 1060P11.3 - - - 19 - killer cell immunoglobulin-like receptor, three domains, pseudogene pseudo - - - - 20121209 -9606 100506175 LOC100506175 - - - 20 - uncharacterized LOC100506175 miscRNA - - - - 20121209 -9606 100506178 LOC100506178 - - - 7 - uncharacterized LOC100506178 miscRNA - - - - 20121230 -9606 100506183 LOC100506183 - - - 16 - uncharacterized LOC100506183 miscRNA - - - - 20121209 -9606 100506185 LOC100506185 - - - 21 - putative uncharacterized protein UNQ6125/PRO20090-like pseudo - - - - 20121209 -9606 100506188 LOC100506188 - - - 6 - uncharacterized LOC100506188 miscRNA - - - - 20121230 -9606 100506189 LOC100506189 - - - 9 - uncharacterized LOC100506189 miscRNA - - - - 20121209 -9606 100506190 LOC100506190 - - - 9 - uncharacterized LOC100506190 miscRNA - - - - 20121230 -9606 100506191 LOC100506191 - - - 2 - uncharacterized LOC100506191 unknown - - - - 20121230 -9606 100506195 LOC100506195 - - - 22 - uncharacterized LOC100506195 miscRNA - - - - 20121230 -9606 100506205 TMEM185AP1 - FAM11C|TMEM185AL HGNC:31717 X Xq28 transmembrane protein 185A pseudogene 1 pseudo TMEM185AP1 transmembrane protein 185A pseudogene 1 O - 20121230 -9606 100506206 LOC100506206 - - - 1 - uncharacterized LOC100506206 miscRNA - - - - 20121209 -9606 100506207 LOC100506207 - - - 6 - uncharacterized LOC100506207 miscRNA - - - - 20121230 -9606 100506211 MIR210HG - - HGNC:39524 11 11p15.5 MIR210 host gene (non-protein coding) miscRNA MIR210HG MIR210 host gene (non-protein coding) O - 20121230 -9606 100506215 GCFC1-AS1 - - HGNC:39603 21 - GCFC1 antisense RNA 1 miscRNA GCFC1-AS1 GCFC1 antisense RNA 1 O - 20121230 -9606 100506216 LOC100506216 - - - 2 - uncharacterized LOC100506216 miscRNA - - - - 20121209 -9606 100506217 LOC100506217 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121209 -9606 100506219 LOC100506219 - - - 5 - uncharacterized LOC100506219 miscRNA - - - - 20121209 -9606 100506224 LOC100506224 - - - 6 - translocase of outer mitochondrial membrane 5 homolog (yeast) pseudogene pseudo - - - - 20121230 -9606 100506226 LOC100506226 - - - 12 - uncharacterized LOC100506226 miscRNA - - - - 20121209 -9606 100506227 LOC100506227 - - - 15 - uncharacterized LOC100506227 miscRNA - - - - 20120511 -9606 100506228 LOC100506228 - - - 17 - putative uncharacterized protein encoded by LINC00596-like pseudo - - - - 20121209 -9606 100506229 LOC100506229 - - - 4 - uncharacterized LOC100506229 miscRNA - - - - 20121230 -9606 100506233 LOC100506233 - - - 11 - uncharacterized LOC100506233 miscRNA - - - - 20121230 -9606 100506235 LOC100506235 - - - 2 - uncharacterized LOC100506235 miscRNA - - - - 20121209 -9606 100506236 LOC100506236 - - - 7 - uncharacterized LOC100506236 miscRNA - - - - 20121209 -9606 100506237 NKX2-1-AS1 - - HGNC:40585 14 - NKX2-1 antisense RNA 1 unknown NKX2-1-AS1 NKX2-1 antisense RNA 1 O - 20121230 -9606 100506238 LOC100506238 - - - 11 - uncharacterized LOC100506238 miscRNA - - - - 20121209 -9606 100506241 LOC100506241 - - - 22 - uncharacterized protein FLJ39582-like miscRNA - - - - 20121230 -9606 100506242 LOC100506242 UNQ3061 - - 1 - GLLV3061 protein-coding - - - - 20121017 -9606 100506243 KRBOX1 hCG_2039480 - HGNC:38708|Ensembl:ENSG00000240747|Vega:OTTHUMG00000156448 3 3p22.1 KRAB box domain containing 1 protein-coding KRBOX1 KRAB box domain containing 1 O KRAB domain-containing protein 1 20121230 -9606 100506244 SUMO2P8 - - HGNC:39018 6 - SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 8 pseudo SUMO2P8 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 8 O - 20121230 -9606 100506246 REXO1L9P - - HGNC:44432 8 - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 9, pseudogene pseudo REXO1L9P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 9, pseudogene O - 20121209 -9606 100506248 LOC100506248 - - - 12 - prothymosin alpha-like protein-coding - - - - 20121216 -9606 100506253 LOC100506253 - - - 4 - uncharacterized LOC100506253 miscRNA - - - - 20121209 -9606 100506255 LOC100506255 - - - 10 - uncharacterized LOC100506255 unknown - - - - 20121230 -9606 100506257 LOC100506257 - - - 1 1p21-p13 uncharacterized LOC100506257 unknown - - - - 20121230 -9606 100506258 LOC100506258 - - - 11 - uncharacterized LOC100506258 miscRNA - - - - 20121230 -9606 100506268 LOC100506268 - - - 16 - uncharacterized LOC100506268 miscRNA - - - - 20120726 -9606 100506271 LOC100506271 - - - 22 - uncharacterized LOC100506271 miscRNA - - - - 20121209 -9606 100506272 LOC100506272 - - - 4 - uncharacterized LOC100506272 miscRNA - - - - 20121209 -9606 100506273 LOC100506273 - - - 1 1p36 uncharacterized protein C1orf167-like unknown - - - - 20120726 -9606 100506274 LOC100506274 - - - 2 2p25 uncharacterized LOC100506274 miscRNA - - - - 20121230 -9606 100506275 KRBOX1-AS1 - - HGNC:42942 3 - KRBOX1 antisense RNA 1 miscRNA KRBOX1-AS1 KRBOX1 antisense RNA 1 O - 20121230 -9606 100506276 LOC100506276 - - - 6 - uncharacterized LOC100506276 unknown - - - - 20121230 -9606 100506281 LOC100506281 - - - 16 - uncharacterized LOC100506281 miscRNA - - - - 20120318 -9606 100506282 LOC100506282 - - - 11 - uncharacterized LOC100506282 unknown - - - - 20121230 -9606 100506286 LOC100506286 - - - 2 - uncharacterized LOC100506286 miscRNA - - - - 20121209 -9606 100506288 LOC100506288 - - - 6 - uncharacterized LOC100506288 miscRNA - - - - 20121209 -9606 100506289 LOC100506289 - - - 7 - uncharacterized LOC100506289 miscRNA - - - - 20121209 -9606 100506290 LOC100506290 - - - 14 - uncharacterized LOC100506290 other - - - - 20120726 -9606 100506295 LOC100506295 - - - 17 - uncharacterized LOC100506295 miscRNA - - - - 20121209 -9606 100506299 LOC100506299 - - - 2 - uncharacterized LOC100506299 miscRNA - - - - 20121209 -9606 100506300 LOC100506300 - - - 2 - uncharacterized LOC100506300 miscRNA - - - - 20121209 -9606 100506301 LINC00694 - - HGNC:44570 3 - long intergenic non-protein coding RNA 694 miscRNA LINC00694 long intergenic non-protein coding RNA 694 O - 20121209 -9606 100506302 LOC100506302 - - - 7 - uncharacterized LOC100506302 miscRNA - - - - 20121209 -9606 100506303 LOC100506303 - - - 14 - uncharacterized LOC100506303 miscRNA - - - - 20121209 -9606 100506304 LOC100506304 - - - 9 - uncharacterized LOC100506304 miscRNA - - - - 20121209 -9606 100506305 LOC100506305 - - - 11 - uncharacterized LOC100506305 miscRNA - - - - 20121230 -9606 100506310 LOC100506310 - - Ensembl:ENSG00000215910|Vega:OTTHUMG00000002228 1 1p36 uncharacterized protein C1orf167-like protein-coding - - - - 20121230 -9606 100506311 HOTAIRM1 - HOXA-AS1|HOXA1-AS1|NCRNA00179 HGNC:37117 7 7p15.2 HOXA transcript antisense RNA, myeloid-specific 1 miscRNA HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 O - 20121230 -9606 100506312 LOC100506312 - - - 7 - uncharacterized LOC100506312 miscRNA - - - - 20121209 -9606 100506314 LOC100506314 - - - 12 - uncharacterized LOC100506314 miscRNA - - - - 20121230 -9606 100506317 LOC100506317 - - - 2 - uncharacterized LOC100506317 miscRNA - - - - 20121209 -9606 100506319 LOC100506319 - - - 3 - uncharacterized LOC100506319 miscRNA - - - - 20121209 -9606 100506321 LOC100506321 - - - 14 - uncharacterized LOC100506321 miscRNA - - - - 20121230 -9606 100506325 LOC100506325 - - - 17 - uncharacterized LOC100506325 miscRNA - - - - 20121230 -9606 100506326 LOC100506326 - - - 22 - uncharacterized LOC100506326 unknown - - - - 20120511 -9606 100506328 LOC100506328 - - - 2 2q12.1 uncharacterized LOC100506328 miscRNA - - - - 20121230 -9606 100506329 LOC100506329 - - - 5 - uncharacterized LOC100506329 miscRNA - - - - 20121209 -9606 100506330 WBP1LP2 - - HGNC:43949 7 - WW domain binding protein 1-like pseudogene 2 pseudo WBP1LP2 WW domain binding protein 1-like pseudogene 2 O - 20121230 -9606 100506331 LOC100506331 - - - 9 - uncharacterized LOC100506331 miscRNA - - - - 20121209 -9606 100506333 LOC100506333 - - - 16 - uncharacterized LOC100506333 pseudo - - - - 20121209 -9606 100506334 LINC00649 - - HGNC:44305 21 - long intergenic non-protein coding RNA 649 miscRNA LINC00649 long intergenic non-protein coding RNA 649 O - 20121230 -9606 100506342 LOC100506342 - - - 8 - uncharacterized LOC100506342 unknown - - - - 20121230 -9606 100506343 LOC100506343 - - - 1 - uncharacterized LOC100506343 miscRNA - - - - 20121230 -9606 100506346 LOC100506346 - - - 15 - uncharacterized LOC100506346 miscRNA - - - - 20120511 -9606 100506347 LOC100506347 - - - 16 - uncharacterized LOC100506347 miscRNA - - - - 20121209 -9606 100506348 LOC100506348 - - - 20 - uncharacterized LOC100506348 miscRNA - - - - 20121209 -9606 100506351 LOC100506351 - - - 8 - uncharacterized LOC100506351 miscRNA - - - - 20121209 -9606 100506352 LOC100506352 - - - 11 - uncharacterized LOC100506352 miscRNA - - - - 20121209 -9606 100506354 LOC100506354 - - - 1 - uncharacterized LOC100506354 unknown - - - - 20121017 -9606 100506356 ARSD-AS1 - - HGNC:40085 X - ARSD antisense RNA 1 miscRNA ARSD-AS1 ARSD antisense RNA 1 O - 20121021 -9606 100506357 LOC100506357 - - - 2 - uncharacterized LOC100506357 miscRNA - - - - 20120511 -9606 100506358 LOC100506358 - - - 14 - uncharacterized LOC100506358 unknown - - - - 20121230 -9606 100506365 LOC100506365 - - - 8 - uncharacterized LOC100506365 miscRNA - - - - 20121209 -9606 100506368 LOC100506368 - - - 11 - uncharacterized LOC100506368 miscRNA - - - - 20121230 -9606 100506369 LOC100506369 - - - 21 - uncharacterized LOC100506369 miscRNA - - - - 20121209 -9606 100506371 LOC100506371 - - - 17 - uncharacterized LOC100506371 miscRNA - - - - 20121209 -9606 100506373 LOC100506373 - - - 17 - uncharacterized LOC100506373 miscRNA - - - - 20121209 -9606 100506374 LOC100506374 - - - 19 - uncharacterized LOC100506374 miscRNA - - - - 20121209 -9606 100506376 TTLL10-AS1 - - HGNC:41159 1 1p36.33 TTLL10 antisense RNA 1 unknown TTLL10-AS1 TTLL10 antisense RNA 1 O - 20121230 -9606 100506377 LOC100506377 - - - 3 - uncharacterized LOC100506377 miscRNA - - - - 20121209 -9606 100506379 LOC100506379 - - - 6 - uncharacterized LOC100506379 miscRNA - - - - 20121209 -9606 100506380 LOC100506380 hCG_2040076 - - 7 - uncharacterized LOC100506380 miscRNA - - - - 20121230 -9606 100506384 LOC100506384 - - - 20 - uncharacterized LOC100506384 miscRNA - - - - 20121230 -9606 100506385 LOC100506385 - - - 21 - uncharacterized LOC100506385 miscRNA - - - - 20121230 -9606 100506388 LOC100506388 - - - 17 - uncharacterized LOC100506388 protein-coding - - - uncharacterized protein LOC100506388 20121230 -9606 100506389 LOC100506389 - - - 6 - uncharacterized LOC100506389 miscRNA - - - - 20121209 -9606 100506390 LOC100506390 - - - 9 - RAP1B, member of RAS oncogene family pseudogene pseudo - - - - 20121230 -9606 100506392 LOC100506392 - - - 1 1p13-p12 uncharacterized LOC100506392 miscRNA - - - - 20121230 -9606 100506393 LOC100506393 - - - 12 12p12 uncharacterized LOC100506393 miscRNA - - - - 20121230 -9606 100506394 LOC100506394 - - - 13 - uncharacterized LOC100506394 miscRNA - - - - 20121230 -9606 100506399 LOC100506399 - - - X - FLJ00363 protein unknown - - - - 20120710 -9606 100506400 LOC100506400 - - - 3 - chromosome 11 open reading frame 10 pseudogene pseudo - - - - 20121230 -9606 100506403 LOC100506403 - - - 21 - uncharacterized LOC100506403 miscRNA - - - - 20121230 -9606 100506405 LOC100506405 - - - 2 - uncharacterized LOC100506405 miscRNA - - - - 20121209 -9606 100506406 LOC100506406 - - - 5 - uncharacterized LOC100506406 miscRNA - - - - 20121209 -9606 100506409 ELOVL2-AS1 - - HGNC:44156 6 - ELOVL2 antisense RNA 1 miscRNA ELOVL2-AS1 ELOVL2 antisense RNA 1 O - 20121230 -9606 100506411 LOC100506411 - - - 14 - uncharacterized LOC100506411 miscRNA - - - - 20121209 -9606 100506412 LOC100506412 - - - 14 - uncharacterized LOC100506412 miscRNA - - - - 20121102 -9606 100506413 LOC100506413 - - - 7 - uncharacterized LOC100506413 miscRNA - - - - 20121230 -9606 100506414 LOC100506414 - - - 9 - uncharacterized LOC100506414 miscRNA - - - - 20121209 -9606 100506417 LOC100506417 - - - 16 - uncharacterized LOC100506417 unknown - - - - 20120511 -9606 100506418 LOC100506418 - - - 17 - uncharacterized LOC100506418 miscRNA - - - - 20121209 -9606 100506421 LOC100506421 - - - 2 2q12 uncharacterized LOC100506421 miscRNA - - - - 20121230 -9606 100506422 LOC100506422 - - - 9 9p21.2 putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding - - - dUTPase-like protein 20121230 -9606 100506424 UBE2L2 - - HGNC:12487 12 12q12 ubiquitin-conjugating enzyme E2L 2 (pseudogene) pseudo UBE2L2 ubiquitin-conjugating enzyme E2L 2 (pseudogene) O - 20121230 -9606 100506427 LOC100506427 - - - 20 - uncharacterized LOC100506427 pseudo - - - - 20121209 -9606 100506428 CBR3-AS1 - PlncRNA-1 HGNC:43664 21 - CBR3 antisense RNA 1 miscRNA CBR3-AS1 CBR3 antisense RNA 1 O - 20121230 -9606 100506431 LOC100506431 - - - 6 6p25-p24 B2 RNA miscRNA - - - - 20121230 -9606 100506433 LINC00648 - - HGNC:44302 14 - long intergenic non-protein coding RNA 648 miscRNA LINC00648 long intergenic non-protein coding RNA 648 O - 20121230 -9606 100506436 SPAG5-AS1 - - HGNC:41140 17 - SPAG5 antisense RNA 1 miscRNA SPAG5-AS1 SPAG5 antisense RNA 1 O - 20121230 -9606 100506443 ITPKB-IT1 - - HGNC:41349 1 1q42.13 ITPKB intronic transcript 1 (non-protein coding) miscRNA ITPKB-IT1 ITPKB intronic transcript 1 (non-protein coding) O - 20121230 -9606 100506444 LOC100506444 - - - 4 4q11-q12 uncharacterized LOC100506444 miscRNA - - - - 20120511 -9606 100506446 LOC100506446 - - - 14 - uncharacterized LOC100506446 miscRNA - - - - 20121209 -9606 100506447 LOC100506447 - - - 7 - uncharacterized LOC100506447 unknown - - - - 20121102 -9606 100506449 LOC100506449 - - - 9 - uncharacterized LOC100506449 pseudo - - - - 20121209 -9606 100506451 LOC100506451 - - - 12 - uncharacterized LOC100506451 miscRNA - - - - 20121230 -9606 100506453 LOC100506453 - - - X - uncharacterized LOC100506453 miscRNA - - - - 20121209 -9606 100506454 LOC100506454 - - - 22 - uncharacterized LOC100506454 miscRNA - - - - 20121209 -9606 100506457 LOC100506457 - - - 2 - uncharacterized LOC100506457 miscRNA - - - - 20121209 -9606 100506458 LOC100506458 - - - 7 - putative uncharacterized protein LOC65996-like unknown - - - - 20121230 -9606 100506459 LOC100506459 - - - 1 - uncharacterized LOC100506459 unknown - - - - 20121230 -9606 100506462 SRD5A3-AS1 - - HGNC:44138 4 - SRD5A3 antisense RNA 1 miscRNA SRD5A3-AS1 SRD5A3 antisense RNA 1 O - 20121230 -9606 100506465 LOC100506465 - - - 12 - uncharacterized LOC100506465 miscRNA - - - - 20121209 -9606 100506469 LOC100506469 - - - 19 - uncharacterized LOC100506469 miscRNA - - - - 20121230 -9606 100506470 LOC100506470 - - - 20 - uncharacterized LOC100506470 miscRNA - - - - 20121209 -9606 100506472 LOC100506472 - - - 22 - uncharacterized LOC100506472 miscRNA - - - - 20121230 -9606 100506473 LOC100506473 - - - 2 - uncharacterized LOC100506473 miscRNA - - - - 20121209 -9606 100506474 LOC100506474 - - - 2 2p24 uncharacterized LOC100506474 miscRNA - - - - 20121230 -9606 100506475 EGFLAM-AS2 - - HGNC:41168 5 5p13.2 EGFLAM antisense RNA 2 miscRNA EGFLAM-AS2 EGFLAM antisense RNA 2 O - 20121230 -9606 100506476 LOC100506476 - - - 14 - uncharacterized LOC100506476 miscRNA - - - - 20121209 -9606 100506478 LOC100506478 - - - 1 - uncharacterized LOC100506478 miscRNA - - - - 20121209 -9606 100506486 LOC100506486 - - - 4 - uncharacterized LOC100506486 unknown - - - - 20120726 -9606 100506489 LOC100506489 - - - 7 - uncharacterized LOC100506489 miscRNA - - - - 20121209 -9606 100506492 DSCAM-AS1 - M41 HGNC:40197 21 - DSCAM antisense RNA 1 miscRNA DSCAM-AS1 DSCAM antisense RNA 1 O - 20121230 -9606 100506495 LIFR-AS1 - - HGNC:43600 5 - LIFR antisense RNA 1 unknown LIFR-AS1 LIFR antisense RNA 1 O - 20121230 -9606 100506496 LOC100506496 - - - 6 - uncharacterized LOC100506496 miscRNA - - - - 20121209 -9606 100506497 LOC100506497 - - - 7 - uncharacterized LOC100506497 miscRNA - - - - 20121230 -9606 100506498 LOC100506498 - - - 14 - uncharacterized LOC100506498 miscRNA - - - - 20121209 -9606 100506499 LOC100506499 - - - 14 - uncharacterized LOC100506499 miscRNA - - - - 20121230 -9606 100506502 LOC100506502 - - - X - uncharacterized LOC100506502 miscRNA - - - - 20121209 -9606 100506504 LOC100506504 - - - 1 - uncharacterized LOC100506504 protein-coding - - - - 20121230 -9606 100506506 MORC1-AS1 - - HGNC:40377 3 - MORC1 antisense RNA 1 miscRNA MORC1-AS1 MORC1 antisense RNA 1 O - 20121021 -9606 100506513 CATX-1 - - - 2 - uncharacterized LOC100506513 unknown - - - - 20120511 -9606 100506514 LOC100506514 - - - 4 4q12 uncharacterized LOC100506514 protein-coding - - - - 20120622 -9606 100506516 LOC100506516 - - - 7 - uncharacterized LOC100506516 miscRNA - - - - 20121209 -9606 100506518 LOC100506518 - - - 11 - uncharacterized LOC100506518 miscRNA - - - - 20121209 -9606 100506526 LOC100506526 - - - 5 - uncharacterized LOC100506526 miscRNA - - - - 20121209 -9606 100506527 LOC100506527 - - - 7 - uncharacterized LOC100506527 miscRNA - - - - 20121209 -9606 100506530 LOC100506530 - - - 15 - uncharacterized LOC100506530 miscRNA - - - - 20121209 -9606 100506532 LOC100506532 - - - 9 - uncharacterized LOC100506532 miscRNA - - - - 20121209 -9606 100506533 LOC100506533 - - - 1 - putative uncharacterized protein FLJ35883-like protein-coding - - - - 20121209 -9606 100506534 LOC100506534 - - - 7 - uncharacterized LOC100506534 miscRNA - - - - 20121209 -9606 100506538 LOC100506538 - - - 8 - uncharacterized LOC100506538 miscRNA - - - - 20121209 -9606 100506540 SPTY2D1-AS1 - - HGNC:44122 11 - SPTY2D1 antisense RNA 1 miscRNA SPTY2D1-AS1 SPTY2D1 antisense RNA 1 O - 20121230 -9606 100506542 LOC100506542 - - MIM:614978 16 - uncharacterized LOC100506542 miscRNA - - - - 20121230 -9606 100506543 LOC100506543 - - - 1 - uncharacterized LOC100506543 miscRNA - - - - 20121209 -9606 100506544 LOC100506544 - - - 22 - uncharacterized LOC100506544 unknown - - - - 20121230 -9606 100506545 LOC100506545 - - - X - histone H2B type W-T-like protein-coding - - - - 20120318 -9606 100506546 LOC100506546 - - - 1 - uncharacterized LOC100506546 miscRNA - - - - 20121209 -9606 100506548 LOC100506548 - - - 5 - uncharacterized LOC100506548 miscRNA - - - - 20121230 -9606 100506551 LOC100506551 - - - 12 - uncharacterized LOC100506551 miscRNA - - - - 20121230 -9606 100506555 PVRL3-AS1 - - HGNC:40813 3 - PVRL3 antisense RNA 1 miscRNA PVRL3-AS1 PVRL3 antisense RNA 1 O - 20121230 -9606 100506557 LOC100506557 tcag7.1184 - - 7 - uncharacterized LOC100506557 unknown - - - - 20121230 -9606 100506558 LOC100506558 - - - 8 - uncharacterized LOC100506558 miscRNA - - - - 20121209 -9606 100506562 LOC100506562 hCG_2013595 - - 22 22q13.2 protein LLP homolog protein-coding - - - uncharacterized protein LOC100506562 20121230 -9606 100506563 LOC100506563 - - - 2 - uncharacterized LOC100506563 miscRNA - - - - 20121209 -9606 100506564 THEGL - - HGNC:43771|Ensembl:ENSG00000249693|Vega:OTTHUMG00000160770 4 - theg spermatid protein-like protein-coding THEGL theg spermatid protein-like O testicular haploid expressed gene protein-like|theg spermatid-like protein 20121230 -9606 100506569 LOC100506569 - - - 11 11p15.1 serine/arginine-rich splicing factor 3 pseudogene pseudo - - - - 20121230 -9606 100506571 LOC100506571 - - - 1 - uncharacterized LOC100506571 protein-coding - - - - 20121230 -9606 100506574 SNRPGP9 - - HGNC:39328 2 2q13 small nuclear ribonucleoprotein polypeptide G pseudogene 9 pseudo SNRPGP9 small nuclear ribonucleoprotein polypeptide G pseudogene 9 O - 20121230 -9606 100506576 LOC100506576 - - - 14 - ubiquitin-conjugating enzyme E2L 3 pseudogene pseudo - - - - 20121230 -9606 100506578 LOC100506578 - - - 12 - uncharacterized LOC100506578 pseudo - - - - 20121209 -9606 100506581 C16orf95 hCG_1980668 - HGNC:40033|Ensembl:ENSG00000131152|Ensembl:ENSG00000260456|Vega:OTTHUMG00000175680|Vega:OTTHUMG00000175684 16 16q24.2 chromosome 16 open reading frame 95 protein-coding C16orf95 chromosome 16 open reading frame 95 O uncharacterized protein C16orf95 20121230 -9606 100506585 LOC100506585 - - - 7 - uncharacterized LOC100506585 miscRNA - - - - 20121230 -9606 100506595 HMGB1P40 hCG_1991922 - HGNC:39187 11 11p15.1 high mobility group box 1 pseudogene 40 pseudo HMGB1P40 high mobility group box 1 pseudogene 40 O - 20121230 -9606 100506596 LOC100506596 - - - 17 - uncharacterized LOC100506596 unknown - - - - 20121230 -9606 100506599 LOC100506599 - - - 9 - uncharacterized LOC100506599 miscRNA - - - - 20121230 -9606 100506600 MAST4-AS1 - - HGNC:40865 5 - MAST4 antisense RNA 1 miscRNA MAST4-AS1 MAST4 antisense RNA 1 O - 20121021 -9606 100506603 LOC100506603 - - - 14 - uncharacterized LOC100506603 miscRNA - - - - 20120622 -9606 100506606 LOC100506606 - - - 12 - uncharacterized LOC100506606 miscRNA - - - - 20121230 -9606 100506609 LOC100506609 - - - 17 - uncharacterized LOC100506609 miscRNA - - - - 20121209 -9606 100506610 LOC100506610 - - - X - uncharacterized LOC100506610 miscRNA - - - - 20121102 -9606 100506620 LOC100506620 - - - 9 - uncharacterized LOC100506620 miscRNA - - - - 20121209 -9606 100506621 LOC100506621 - - - 3 - uncharacterized LOC100506621 miscRNA - - - - 20120511 -9606 100506622 LINC00540 - - HGNC:43673 13 - long intergenic non-protein coding RNA 540 miscRNA LINC00540 long intergenic non-protein coding RNA 540 O - 20121230 -9606 100506627 DCDC5 hCG_1990724 - HGNC:24799|MIM:612321|Ensembl:ENSG00000170959|Vega:OTTHUMG00000150145 11 11p14.1 doublecortin domain containing 5 protein-coding DCDC5 doublecortin domain containing 5 O doublecortin domain-containing protein 5 20121230 -9606 100506629 LOC100506629 - - - 17 - uncharacterized LOC100506629 miscRNA - - - - 20121209 -9606 100506630 LOC100506630 - - - X - uncharacterized LOC100506630 miscRNA - - - - 20121209 -9606 100506631 LOC100506631 - - - 6 - uncharacterized LOC100506631 miscRNA - - - - 20121209 -9606 100506633 LOC100506633 - - - 8 - ubiquitin-fold modifier 1 pseudogene pseudo - - - - 20121230 -9606 100506634 LOC100506634 - - - 19 - hepatocellular carcinoma-associated antigen HCA25a unknown - - - - 20121209 -9606 100506635 LOC100506635 - - - 1 - uncharacterized LOC100506635 protein-coding - - - - 20120511 -9606 100506636 LOC100506636 - - - 1 - uncharacterized LOC100506636 miscRNA - - - - 20121209 -9606 100506637 PRKAR2A-AS1 - - HGNC:40471 3 - PRKAR2A antisense RNA 1 miscRNA PRKAR2A-AS1 PRKAR2A antisense RNA 1 O - 20121209 -9606 100506639 LOC100506639 - - - 5 5p12 uncharacterized LOC100506639 miscRNA - - - - 20121230 -9606 100506641 LOC100506641 - - - X - uncharacterized LOC100506641 miscRNA - - - - 20121209 -9606 100506643 LOC100506643 - - - 17 - uncharacterized LOC100506643 miscRNA - - - - 20121209 -9606 100506647 LOC100506647 - - - 6 - uncharacterized LOC100506647 miscRNA - - - - 20121209 -9606 100506649 PXN-AS1 - - HGNC:44123 12 - PXN antisense RNA 1 miscRNA PXN-AS1 PXN antisense RNA 1 O - 20121230 -9606 100506650 C17orf112 - - HGNC:42963|Ensembl:ENSG00000227011|Vega:OTTHUMG00000132355 17 - chromosome 17 open reading frame 112 protein-coding C17orf112 chromosome 17 open reading frame 112 O uncharacterized protein C17orf112 20121230 -9606 100506651 LOC100506651 - - - 3 - uncharacterized LOC100506651 miscRNA - - - - 20121209 -9606 100506652 LOC100506652 - - - 8 - uncharacterized LOC100506652 miscRNA - - - - 20121209 -9606 100506654 LOC100506654 - - - X - gem (nuclear organelle) associated protein 7 pseudogene pseudo - - - - 20121230 -9606 100506655 LOC100506655 - - - 16 - uncharacterized LOC100506655 miscRNA - - - - 20121230 -9606 100506658 OCLN hCG_1988850 BLCPMG HGNC:8104|MIM:602876|Ensembl:ENSG00000197822|Vega:OTTHUMG00000099356 5 5q13.1 occludin protein-coding OCLN occludin O tight junction protein occludin 20121230 -9606 100506660 DDX11-AS1 - - HGNC:44176 12 - DDX11 antisense RNA 1 miscRNA DDX11-AS1 DDX11 antisense RNA 1 O - 20121230 -9606 100506661 LOC100506661 - - - X - uncharacterized LOC100506661 miscRNA - - - - 20121209 -9606 100506664 LOC100506664 - - - 7 - uncharacterized LOC100506664 miscRNA - - - - 20121209 -9606 100506667 LOC100506667 - - - 9 - uncharacterized LOC100506667 protein-coding - - - - 20121230 -9606 100506668 LOC100506668 - - - 12 - uncharacterized LOC100506668 miscRNA - - - - 20121230 -9606 100506671 PHKA1-AS1 - - HGNC:40446 X - PHKA1 antisense RNA 1 miscRNA PHKA1-AS1 PHKA1 antisense RNA 1 O - 20121021 -9606 100506672 LOC100506672 - - - 1 - cytochrome c oxidase subunit VIIc pseudogene pseudo - - - - 20121230 -9606 100506673 ZBTB20-AS2 - - HGNC:42421 3 - ZBTB20 antisense RNA 2 miscRNA ZBTB20-AS2 ZBTB20 antisense RNA 2 O - 20121021 -9606 100506674 LOC100506674 - - - 5 - uncharacterized LOC100506674 miscRNA - - - - 20121209 -9606 100506675 LOC100506675 - - - 11 - uncharacterized LOC100506675 miscRNA - - - - 20121209 -9606 100506677 AA06 - AA02|AA04|AA05 - 17 17q12 uncharacterized LOC100506677 pseudo - - - - 20121230 -9606 100506679 LOC100506679 - - - 22 - uncharacterized LOC100506679 miscRNA - - - - 20121230 -9606 100506680 SACS-AS1 - - HGNC:39835 13 13q12 SACS antisense RNA 1 miscRNA SACS-AS1 SACS antisense RNA 1 O - 20121230 -9606 100506681 JARID2-AS1 - - HGNC:40314 6 - JARID2 antisense RNA 1 miscRNA JARID2-AS1 JARID2 antisense RNA 1 O - 20121230 -9606 100506682 LOC100506682 - - - 7 - uncharacterized LOC100506682 miscRNA - - - - 20121209 -9606 100506684 LOC100506684 - - - 12 - uncharacterized LOC100506684 miscRNA - - - - 20121209 -9606 100506685 STMN1P1 - - HGNC:44062 12 - stathmin 1 pseudogene 1 pseudo STMN1P1 stathmin 1 pseudogene 1 O - 20121230 -9606 100506686 IQCH-AS1 - - HGNC:44104 15 15q23 IQCH antisense RNA 1 miscRNA IQCH-AS1 IQCH antisense RNA 1 O - 20121230 -9606 100506688 LOC100506688 - - - 5 - uncharacterized LOC100506688 protein-coding - - - uncharacterized protein LOC100506688 20121230 -9606 100506691 LOC100506691 - - - 12 - uncharacterized LOC100506691 miscRNA - - - - 20121209 -9606 100506695 LOC100506695 - - - 22 - uncharacterized LOC100506695 miscRNA - - - - 20121209 -9606 100506696 KDM5B-AS1 - ncRNA-a2 HGNC:43714 1 - KDM5B antisense RNA 1 (head to head) miscRNA KDM5B-AS1 KDM5B antisense RNA 1 (head to head) O - 20121230 -9606 100506697 LINC00327 - NCRNA00327 HGNC:42009 13 - long intergenic non-protein coding RNA 327 miscRNA LINC00327 long intergenic non-protein coding RNA 327 O - 20121230 -9606 100506699 LOC100506699 - - - 7 - uncharacterized LOC100506699 unknown - - - - 20120710 -9606 100506700 LOC100506700 - - - 14 - uncharacterized LOC100506700 miscRNA - - - - 20121209 -9606 100506705 LOC100506705 - - - 16 - uncharacterized LOC100506705 miscRNA - - - - 20121209 -9606 100506706 LOC100506706 - - - 19 - uncharacterized LOC100506706 pseudo - - - - 20121209 -9606 100506708 LSAMP-AS1 - - HGNC:40350 3 - LSAMP antisense RNA 1 miscRNA LSAMP-AS1 LSAMP antisense RNA 1 O - 20121021 -9606 100506710 LOC100506710 - - - 9 9p13.2 endogenous Bornavirus-like nucleoprotein 2 pseudogene pseudo - - - - 20121230 -9606 100506712 HNRNPA1P5 - - HGNC:15787 15 15q23 heterogeneous nuclear ribonucleoprotein A1 pseudogene 5 pseudo HNRNPA1P5 heterogeneous nuclear ribonucleoprotein A1 pseudogene 5 O - 20121230 -9606 100506713 LOC100506713 - - - 17 - uncharacterized LOC100506713 miscRNA - - - - 20121230 -9606 100506714 LOC100506714 - - - 22 - uncharacterized LOC100506714 miscRNA - - - - 20121230 -9606 100506715 LOC100506715 - - - X - paroxysmal nonkinesigenic dyskinesia pseudogene pseudo - - - - 20121230 -9606 100506718 LOC100506718 - - - 14 - uncharacterized LOC100506718 miscRNA - - - - 20121209 -9606 100506721 MTND1P36 - - HGNC:42086 11 11q22.3 MT-ND1 pseudogene 36 pseudo MTND1P36 MT-ND1 pseudogene 36 O - 20121230 -9606 100506723 TMSB10P1 - - HGNC:41949 2 2q37 thymosin beta 10 pseudogene 1 pseudo TMSB10P1 thymosin beta 10 pseudogene 1 O - 20121230 -9606 100506724 LSAMP-AS4 - - HGNC:40352 3 - LSAMP antisense RNA 4 miscRNA LSAMP-AS4 LSAMP antisense RNA 4 O - 20121209 -9606 100506725 LOC100506725 - - - 7 - uncharacterized LOC100506725 miscRNA - - - - 20121209 -9606 100506730 LOC100506730 - - - 1 1p36 uncharacterized LOC100506730 miscRNA - - - - 20121230 -9606 100506731 LOC100506731 - - - 14 - uncharacterized LOC100506731 miscRNA - - - - 20121209 -9606 100506733 LOC100506733 - - - 10 - uncharacterized LOC100506733 miscRNA - - - - 20121230 -9606 100506734 LOC100506734 - - - 12 - uncharacterized LOC100506734 pseudo - - - - 20121209 -9606 100506735 LOC100506735 - - - 16 - uncharacterized LOC100506735 miscRNA - - - - 20121209 -9606 100506736 SLFN12L - - HGNC:33920|MIM:614956|Ensembl:ENSG00000205045|Vega:OTTHUMG00000167707 17 17q12 schlafen family member 12-like protein-coding SLFN12L schlafen family member 12-like O - 20121230 -9606 100506737 LOC100506737 - - - 22 - uncharacterized LOC100506737 miscRNA - - - - 20121209 -9606 100506742 CASP12 UNQ9415 CASP-12|CASP12P1 HGNC:19004|MIM:608633|Ensembl:ENSG00000204403|Vega:OTTHUMG00000154965 11 11q22.3 caspase 12 (gene/pseudogene) protein-coding CASP12 caspase 12 (gene/pseudogene) O caspase 12 pseudogene 1|inactive caspase-12 20121230 -9606 100506745 LOC100506745 - - - X - protein shisa-5-like protein-coding - - - - 20121209 -9606 100506746 LOC100506746 - - - 4 4q21 uncharacterized LOC100506746 miscRNA - - - - 20121230 -9606 100506747 LOC100506747 - - - 1 - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog pseudo - - - - 20121230 -9606 100506748 LOC100506748 - - - 2 - uncharacterized LOC100506748 miscRNA - - - - 20121209 -9606 100506749 AGAP1-IT1 - - HGNC:41427 2 2q37 AGAP1 intronic transcript 1 (non-protein coding) miscRNA AGAP1-IT1 AGAP1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100506753 LOC100506753 - - - 8 - uncharacterized LOC100506753 miscRNA - - - - 20121209 -9606 100506755 MIR497HG - - HGNC:39523 17 17p13.1 mir-497-195 cluster host gene (non-protein coding) miscRNA MIR497HG mir-497-195 cluster host gene (non-protein coding) O - 20121230 -9606 100506757 LINC00629 - - HGNC:44262 X - long intergenic non-protein coding RNA 629 miscRNA LINC00629 long intergenic non-protein coding RNA 629 O - 20121230 -9606 100506759 OR7E37P - OR7E48P|OST193|hg533 HGNC:8410 13 - olfactory receptor, family 7, subfamily E, member 37 pseudogene pseudo OR7E37P olfactory receptor, family 7, subfamily E, member 37 pseudogene O - 20121230 -9606 100506765 IGSF11-AS1 - - HGNC:40777 3 3q13.32 IGSF11 antisense RNA 1 miscRNA IGSF11-AS1 IGSF11 antisense RNA 1 O - 20121230 -9606 100506766 LOC100506766 - - - 5 - uncharacterized LOC100506766 unknown - - - - 20121230 -9606 100506769 LOC100506769 - - - 10 - uncharacterized LOC100506769 miscRNA - - - - 20121209 -9606 100506775 LOC100506775 - - - 1 - uncharacterized LOC100506775 miscRNA - - - - 20121209 -9606 100506776 LOC100506776 - - - 7 7p14 uncharacterized LOC100506776 miscRNA - - - - 20121230 -9606 100506779 BZRAP1-AS1 - - HGNC:44148 17 - BZRAP1 antisense RNA 1 miscRNA BZRAP1-AS1 BZRAP1 antisense RNA 1 O - 20121230 -9606 100506783 HOXD-AS2 - - HGNC:43756 2 2q31.1 HOXD cluster antisense RNA 2 miscRNA HOXD-AS2 HOXD cluster antisense RNA 2 O - 20121230 -9606 100506785 LOC100506785 - - - 10 - poly (ADP-ribose) glycohydrolase pseudogene pseudo - - - - 20121230 -9606 100506787 LOC100506787 - - - 18 - uncharacterized LOC100506787 miscRNA - - - - 20121209 -9606 100506790 LOC100506790 - - - X - uncharacterized LOC100506790 miscRNA - - - - 20121209 -9606 100506791 LOC100506791 - - - 5 - uncharacterized LOC100506791 miscRNA - - - - 20121209 -9606 100506792 LOC100506792 - - - 14 - uncharacterized LOC100506792 miscRNA - - - - 20121209 -9606 100506795 LOC100506795 - - - 1 1q42-q43 uncharacterized LOC100506795 miscRNA - - - - 20121230 -9606 100506797 LOC100506797 - - - 2 - uncharacterized LOC100506797 miscRNA - - - - 20121209 -9606 100506801 LOC100506801 - - - 1 1p36.1 uncharacterized LOC100506801 miscRNA - - - - 20121230 -9606 100506803 LOC100506803 - - - 13 - uncharacterized LOC100506803 pseudo - - - - 20121209 -9606 100506804 LOC100506804 - - - 6 6q14.1 uncharacterized LOC100506804 miscRNA - - - - 20121230 -9606 100506810 LOC100506810 - - - 1 1q42-q43 uncharacterized LOC100506810 miscRNA - - - - 20121230 -9606 100506811 LOC100506811 - - - X - H3 histone, family 3B (H3.3B) pseudogene pseudo - - - - 20121230 -9606 100506813 LOC100506813 - - - 22 - uncharacterized LOC100506813 unknown - - - - 20121230 -9606 100506815 FOXP1-IT1 - - HGNC:41335 3 - FOXP1 intronic transcript 1 (non-protein coding) unknown FOXP1-IT1 FOXP1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100506821 LOC100506821 - - - 18 - uncharacterized LOC100506821 miscRNA - - - - 20121209 -9606 100506826 MYLK-AS1 - - HGNC:42440 3 3q21 MYLK antisense RNA 1 miscRNA MYLK-AS1 MYLK antisense RNA 1 O - 20121230 -9606 100506827 LOC100506827 - - - 4 - uncharacterized LOC100506827 miscRNA - - - - 20121209 -9606 100506834 LOC100506834 - - - 9 - uncharacterized LOC100506834 miscRNA - - - - 20121230 -9606 100506835 LOC100506835 - - - 10 - uncharacterized LOC100506835 miscRNA - - - - 20121230 -9606 100506837 LOC100506837 - - - 18 - uncharacterized LOC100506837 miscRNA - - - - 20121209 -9606 100506840 IQCF4 - - - 3 - IQ motif containing F5 pseudogene pseudo - - - - 20121230 -9606 100506844 LOC100506844 - - - 12 - uncharacterized LOC100506844 miscRNA - - - - 20121230 -9606 100506851 LOC100506851 - - - 6 - uncharacterized LOC100506851 miscRNA - - - - 20121209 -9606 100506853 LOC100506853 - - - 10 - uncharacterized LOC100506853 miscRNA - - - - 20121209 -9606 100506858 LOC100506858 - - - 5 - uncharacterized LOC100506858 miscRNA - - - - 20121209 -9606 100506859 LOC100506859 - - - 13 - serine/threonine-protein kinase Nek5-like protein-coding - - - - 20121209 -9606 100506860 LOC100506860 - - - 7 - uncharacterized LOC100506860 miscRNA - - - - 20121230 -9606 100506861 LOC100506861 - - - 8 - uncharacterized LOC100506861 miscRNA - - - - 20121102 -9606 100506863 CLTC-IT1 - PRO0456 HGNC:41321 17 17q23.2 CLTC intronic transcript 1 (non-protein coding) unknown CLTC-IT1 CLTC intronic transcript 1 (non-protein coding) O - 20121230 -9606 100506865 LOC100506865 - - - 3 - uncharacterized LOC100506865 miscRNA - - - - 20121209 -9606 100506866 TTN-AS1 - - HGNC:44124 2 - TTN antisense RNA 1 miscRNA TTN-AS1 TTN antisense RNA 1 O - 20121230 -9606 100506869 LOC100506869 - - - 12 - uncharacterized LOC100506869 miscRNA - - - - 20121209 -9606 100506870 LOC100506870 - - - 11 - uncharacterized LOC100506870 protein-coding - - - - 20121209 -9606 100506872 RNF7P1 - - HGNC:43425 3 - ring finger protein 7 pseudogene 1 pseudo RNF7P1 ring finger protein 7 pseudogene 1 O - 20121230 -9606 100506874 LOC100506874 - - - 15 - uncharacterized LOC100506874 miscRNA - - - - 20121230 -9606 100506877 LOC100506877 - - - 22 - uncharacterized LOC100506877 miscRNA - - - - 20121209 -9606 100506881 LOC100506881 - - - 7 - uncharacterized LOC100506881 miscRNA - - - - 20121230 -9606 100506882 LOC100506882 - - - 17 - uncharacterized LOC100506882 miscRNA - - - - 20121209 -9606 100506885 LOC100506885 - - - 6 - uncharacterized LOC100506885 miscRNA - - - - 20121209 -9606 100506888 TCEB3CL2 - - HGNC:33511|Ensembl:ENSG00000266996|Vega:OTTHUMG00000180382 18 18q21.1 transcription elongation factor B polypeptide 3C-like 2 protein-coding TCEB3CL2 transcription elongation factor B polypeptide 3C-like 2 O RNA polymerase II transcription factor SIII subunit A3-like-2|eloA3-like-2|elongin-A3-like-2|transcription elongation factor B polypeptide 3C-like-2 20121230 -9606 100506891 LOC100506891 - - - 2 - uncharacterized LOC100506891 miscRNA - - - - 20121209 -9606 100506895 LOC100506895 - - - 7 - uncharacterized LOC100506895 miscRNA - - - - 20121230 -9606 100506897 DAPK1-IT1 - - HGNC:43591 9 - DAPK1 intronic transcript 1 (non-protein coding) miscRNA DAPK1-IT1 DAPK1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100506898 MAGOH2 - - HGNC:30148 17 - mago-nashi homolog 2 (pseudogene) pseudo MAGOH2 mago-nashi homolog 2 (pseudogene) O - 20121230 -9606 100506899 LOC100506899 - - - 1 - uncharacterized LOC100506899 miscRNA - - - - 20121209 -9606 100506901 LOC100506901 - - - X - uncharacterized LOC100506901 miscRNA - - - - 20121209 -9606 100506903 LOC100506903 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121209 -9606 100506906 FLNB-AS1 - - HGNC:40239 3 - FLNB antisense RNA 1 miscRNA FLNB-AS1 FLNB antisense RNA 1 O - 20121021 -9606 100506907 LOC100506907 - - - 3 - uncharacterized LOC100506907 miscRNA - - - - 20121230 -9606 100506908 LOC100506908 - - - 6 - uncharacterized LOC100506908 miscRNA - - - - 20121209 -9606 100506911 LOC100506911 - - - 12 - chromosome 6 open reading frame 35 pseudogene pseudo - - - - 20121230 -9606 100506912 LOC100506912 - - - 9 - uncharacterized LOC100506912 miscRNA - - - - 20121209 -9606 100506915 CHRM3-AS2 - - HGNC:43725 1 - CHRM3 antisense RNA 2 miscRNA CHRM3-AS2 CHRM3 antisense RNA 2 O - 20121230 -9606 100506916 CYP4F9P hCG_36930 - HGNC:39940 19 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 9, pseudogene pseudo CYP4F9P cytochrome P450, family 4, subfamily F, polypeptide 9, pseudogene O - 20121230 -9606 100506917 LOC100506917 - - - 22 - uncharacterized LOC100506917 miscRNA - - - - 20121209 -9606 100506922 LOC100506922 - - - 2 - uncharacterized LOC100506922 miscRNA - - - - 20121209 -9606 100506923 LOC100506923 - - - 2 - uncharacterized LOC100506923 miscRNA - - - - 20121209 -9606 100506925 HNRNPA1P31 - - HGNC:39549 13 13q31.1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 31 pseudo HNRNPA1P31 heterogeneous nuclear ribonucleoprotein A1 pseudogene 31 O - 20121230 -9606 100506926 LOC100506926 - - - 6 - uncharacterized LOC100506926 miscRNA - - - - 20121209 -9606 100506928 LOC100506928 - - - 16 - uncharacterized LOC100506928 unknown - - - - 20121230 -9606 100506929 LOC100506929 - - - 1 - uncharacterized LOC100506929 miscRNA - - - - 20121209 -9606 100506930 LINC00665 - - HGNC:44323 19 19q13.12 long intergenic non-protein coding RNA 665 miscRNA LINC00665 long intergenic non-protein coding RNA 665 O - 20121230 -9606 100506934 LOC100506934 - - - 2 - uncharacterized LOC100506934 miscRNA - - - - 20121209 -9606 100506937 LOC100506937 - - - 7 - uncharacterized LOC100506937 miscRNA - - - - 20121209 -9606 100506938 S100A11P4 - - HGNC:37841 12 - S100 calcium binding protein A11 pseudogene 4 pseudo S100A11P4 S100 calcium binding protein A11 pseudogene 4 O - 20121230 -9606 100506939 LOC100506939 - - - 10 - uncharacterized LOC100506939 miscRNA - - - - 20121230 -9606 100506943 LOC100506943 - - - 16 - uncharacterized LOC100506943 pseudo - - - - 20121209 -9606 100506944 LOC100506944 - - - 3 - uncharacterized LOC100506944 miscRNA - - - - 20121209 -9606 100506946 LOC100506946 - - - 3 - peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 100506947 LOC100506947 - - - 6 - uncharacterized LOC100506947 other - - - - 20120710 -9606 100506948 LOC100506948 - - - 15 - uncharacterized LOC100506948 miscRNA - - - - 20121209 -9606 100506953 FABP7P1 - - HGNC:41951 1 1q44 fatty acid binding protein 7, brain pseudogene 1 pseudo FABP7P1 fatty acid binding protein 7, brain pseudogene 1 O - 20121230 -9606 100506955 LOC100506955 - - - X - chromosome X open reading frame 61 pseudogene pseudo - - - - 20121230 -9606 100506963 LOC100506963 - - - 1 - uncharacterized LOC100506963 miscRNA - - - - 20121230 -9606 100506965 LOC100506965 - - - 15 - uncharacterized LOC100506965 miscRNA - - - - 20120726 -9606 100506971 LOC100506971 - - - 13 - uncharacterized LOC100506971 protein-coding - - - - 20120318 -9606 100506972 LOC100506972 - - - 14 - uncharacterized protein C14orf113-like protein-coding - - - - 20121230 -9606 100506974 LOC100506974 - - - 17 - uncharacterized LOC100506974 miscRNA - - - - 20121209 -9606 100506978 LOC100506978 - - - 12 - uncharacterized LOC100506978 miscRNA - - - - 20121209 -9606 100506985 LOC100506985 - - - 1 - uncharacterized LOC100506985 miscRNA - - - - 20121017 -9606 100506990 LOC100506990 - - - 8 8p23.1 uncharacterized LOC100506990 miscRNA - - - - 20121230 -9606 100506993 LOC100506993 - - - 2 - uncharacterized LOC100506993 miscRNA - - - - 20121209 -9606 100506994 PTPRG-AS1 - - HGNC:44638 3 - PTPRG antisense RNA 1 miscRNA PTPRG-AS1 PTPRG antisense RNA 1 O - 20121230 -9606 100506997 LOC100506997 - - - 13 - uncharacterized LOC100506997 miscRNA - - - - 20121209 -9606 100506999 LOC100506999 - - - 14 - uncharacterized LOC100506999 miscRNA - - - - 20121209 -9606 100507002 LOC100507002 - - - 17 - uncharacterized LOC100507002 miscRNA - - - - 20121209 -9606 100507003 LOC100507003 - - - 19 19q13.33 uncharacterized LOC100507003 protein-coding - - - uncharacterized protein LOC100507003 20121230 -9606 100507006 LOC100507006 - - - 2 - uncharacterized LOC100507006 miscRNA - - - - 20121230 -9606 100507008 LOC100507008 - - - 10 - uncharacterized LOC100507008 miscRNA - - - - 20121209 -9606 100507009 LOC100507009 - - - 9 - uncharacterized LOC100507009 miscRNA - - - - 20121209 -9606 100507012 LOC100507012 - - - 4 - uncharacterized LOC100507012 miscRNA - - - - 20121209 -9606 100507018 LOC100507018 - - - 8 - uncharacterized LOC100507018 miscRNA - - - - 20121209 -9606 100507022 LOC100507022 - - - 19 - FLJ00291 protein unknown - - - - 20120710 -9606 100507024 LOC100507024 - - - 6 - uncharacterized LOC100507024 miscRNA - - - - 20121209 -9606 100507027 M1 - - - 10 - uncharacterized LOC100507027 miscRNA - - - - 20121230 -9606 100507032 LOC100507032 - - - 3 3q21-q22 uncharacterized LOC100507032 miscRNA - - - - 20121230 -9606 100507033 LOC100507033 - - - 3 - uncharacterized LOC100507033 miscRNA - - - - 20121209 -9606 100507034 PITRM1-AS1 - - HGNC:44675 10 - PITRM1 antisense RNA 1 miscRNA PITRM1-AS1 PITRM1 antisense RNA 1 O - 20121230 -9606 100507040 LINC00427 - - HGNC:42762 13 - long intergenic non-protein coding RNA 427 miscRNA LINC00427 long intergenic non-protein coding RNA 427 O - 20121209 -9606 100507043 LINC00617 - - HGNC:44088 14 - long intergenic non-protein coding RNA 617 miscRNA LINC00617 long intergenic non-protein coding RNA 617 O - 20121230 -9606 100507044 NBPF5 RP11-242D10.1 DKFZp434D177-like HGNC:24491|MIM:613995 1 1p13.3 neuroblastoma breakpoint family, member 5 pseudo NBPF5 neuroblastoma breakpoint family, member 5 O - 20121230 -9606 100507046 LOC100507046 - - - 15 - heat shock 10kDa protein 1 (chaperonin 10) pseudogene pseudo - - - - 20121230 -9606 100507050 TPBGL - - HGNC:44159 11 11q13.4 trophoblast glycoprotein-like protein-coding TPBGL trophoblast glycoprotein-like O - 20121230 -9606 100507053 LOC100507053 - - - 4 - uncharacterized LOC100507053 miscRNA - - - - 20121230 -9606 100507054 LOC100507054 - - - 4 - uncharacterized LOC100507054 miscRNA - - - - 20121209 -9606 100507055 LRCOL1 - - HGNC:44160 12 12q24.33 leucine rich colipase-like 1 protein-coding LRCOL1 leucine rich colipase-like 1 O leucine-rich colipase-like protein 1 20121230 -9606 100507056 LOC100507056 - - - 8 - uncharacterized LOC100507056 miscRNA - - - - 20121209 -9606 100507057 MFI2-AS1 - - HGNC:40373 3 - MFI2 antisense RNA 1 miscRNA MFI2-AS1 MFI2 antisense RNA 1 O - 20121230 -9606 100507058 LOC100507058 - - - 10 - uncharacterized LOC100507058 miscRNA - - - - 20121209 -9606 100507059 LINC00703 - - HGNC:44677 10 - long intergenic non-protein coding RNA 703 miscRNA LINC00703 long intergenic non-protein coding RNA 703 O - 20121207 -9606 100507062 PSMD6-AS2 - - HGNC:44125 3 3p14 PSMD6 antisense RNA 2 miscRNA PSMD6-AS2 PSMD6 antisense RNA 2 O - 20121230 -9606 100507064 TEX26-AS1 - LINC00447 HGNC:42784 13 - TEX26 antisense RNA 1 miscRNA TEX26-AS1 TEX26 antisense RNA 1 O - 20121230 -9606 100507065 LOC100507065 - - - 12 - uncharacterized LOC100507065 miscRNA - - - - 20121209 -9606 100507066 LOC100507066 - - - 12 - uncharacterized LOC100507066 miscRNA - - - - 20121230 -9606 100507067 GOLGA8UP - - HGNC:44411 15 - golgin A8 family, member U, pseudogene pseudo GOLGA8UP golgin A8 family, member U, pseudogene O - 20121102 -9606 100507071 LOC100507071 - - - 8 - uncharacterized LOC100507071 miscRNA - - - - 20121209 -9606 100507073 LOC100507073 - - - 2 - uncharacterized LOC100507073 miscRNA - - - - 20121209 -9606 100507077 LOC100507077 - - - 11 - uncharacterized LOC100507077 miscRNA - - - - 20121209 -9606 100507079 LOC100507079 - - - 15 - uncharacterized LOC100507079 unknown - - - - 20121230 -9606 100507082 ADAMTS9-AS1 - - HGNC:40625 3 - ADAMTS9 antisense RNA 1 miscRNA ADAMTS9-AS1 ADAMTS9 antisense RNA 1 O - 20121021 -9606 100507083 LOC100507083 - - - 3 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene pseudo - - - - 20121230 -9606 100507086 DLG1-AS1 - - HGNC:44154 3 - DLG1 antisense RNA 1 miscRNA DLG1-AS1 DLG1 antisense RNA 1 O - 20121230 -9606 100507091 LOC100507091 - - - 12 - uncharacterized LOC100507091 miscRNA - - - - 20121230 -9606 100507092 LOC100507092 - - - 16 - uncharacterized LOC100507092 miscRNA - - - - 20121209 -9606 100507096 GIMD1 - - HGNC:44141 4 4q24 GIMAP family P-loop NTPase domain containing 1 protein-coding GIMD1 GIMAP family P-loop NTPase domain containing 1 O GIMAP family P-loop NTPase domain-containing protein 1|GTPase IMAP family member GIMD1 20121230 -9606 100507097 ATP5G2P3 - - HGNC:42187 2 2q33.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 3 pseudo ATP5G2P3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 3 O - 20121230 -9606 100507098 ADAMTS9-AS2 - - HGNC:42435 3 - ADAMTS9 antisense RNA 2 miscRNA ADAMTS9-AS2 ADAMTS9 antisense RNA 2 O - 20121230 -9606 100507099 FRY-AS1 - - HGNC:39725 13 - FRY antisense RNA 1 miscRNA FRY-AS1 FRY antisense RNA 1 O - 20121230 -9606 100507101 LOC100507101 - - - 8 - uncharacterized LOC100507101 miscRNA - - - - 20121209 -9606 100507102 LOC100507102 - - - 10 10q21 COX20 Cox2 chaperone homolog (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100507103 LOC100507103 - - - 9 - uncharacterized LOC100507103 miscRNA - - - - 20121209 -9606 100507108 LOC100507108 - - - 14 - uncharacterized LOC100507108 miscRNA - - - - 20121209 -9606 100507109 LOC100507109 - - - 11 - uncharacterized LOC100507109 miscRNA - - - - 20121209 -9606 100507113 ZNF638-IT1 - - HGNC:41434 2 2p13.1 ZNF638 intronic transcript 1 (non-protein coding) unknown ZNF638-IT1 ZNF638 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100507114 LINC00445 - - HGNC:42782 13 - long intergenic non-protein coding RNA 445 miscRNA LINC00445 long intergenic non-protein coding RNA 445 O - 20121209 -9606 100507117 LOC100507117 - - - 8 - uncharacterized LOC100507117 miscRNA - - - - 20121230 -9606 100507118 LOC100507118 - - - 15 - uncharacterized LOC100507118 miscRNA - - - - 20121230 -9606 100507124 HMGN1P25 - - HGNC:39369 14 14q32 high mobility group nucleosome binding domain 1 pseudogene 25 pseudo HMGN1P25 high mobility group nucleosome binding domain 1 pseudogene 25 O - 20121230 -9606 100507125 ERHP1 - - HGNC:41916 7 7q34 enhancer of rudimentary homolog (Drosophila) pseudogene 1 pseudo ERHP1 enhancer of rudimentary homolog (Drosophila) pseudogene 1 O - 20121230 -9606 100507127 LINC00707 - - HGNC:44691 10 - long intergenic non-protein coding RNA 707 miscRNA LINC00707 long intergenic non-protein coding RNA 707 O - 20121230 -9606 100507131 LOC100507131 - - - 17 - uncharacterized LOC100507131 unknown - - - - 20121230 -9606 100507134 LOC100507134 - - - 3 - uncharacterized LOC100507134 miscRNA - - - - 20121209 -9606 100507135 SPG20OS RP11-251J8.3 C13orf43 HGNC:39933 13 13q13.3 SPG20 opposite strand miscRNA SPG20OS SPG20 opposite strand O - 20121230 -9606 100507136 LOC100507136 - - - 6 - uncharacterized LOC100507136 miscRNA - - - - 20121209 -9606 100507137 FP2234 - - - 9 - uncharacterized LOC100507137 unknown - - - - 20121230 -9606 100507138 LOC100507138 - - - 7 - putative uncharacterized protein FLJ44672-like pseudo - - - - 20121209 -9606 100507140 LOC100507140 - - - 2 2q33 uncharacterized LOC100507140 miscRNA - - - - 20121230 -9606 100507143 LINC00708 - - HGNC:44694 10 - long intergenic non-protein coding RNA 708 miscRNA LINC00708 long intergenic non-protein coding RNA 708 O - 20121208 -9606 100507144 LOC100507144 - - - 11 - uncharacterized LOC100507144 miscRNA - - - - 20121209 -9606 100507145 LOC100507145 - - - 11 - uncharacterized LOC100507145 miscRNA - - - - 20121209 -9606 100507150 LOC100507150 - - - 4 - uncharacterized LOC100507150 miscRNA - - - - 20121209 -9606 100507156 LOC100507156 - - - 8 - uncharacterized LOC100507156 miscRNA - - - - 20121230 -9606 100507157 MTND1P30 - - HGNC:42079 X Xp11.21 MT-ND1 pseudogene 30 pseudo MTND1P30 MT-ND1 pseudogene 30 O - 20121230 -9606 100507160 LOC100507160 - - - 4 - uncharacterized LOC100507160 miscRNA - - - - 20121209 -9606 100507161 LOC100507161 - - - 5 - putative uncharacterized protein NCRNA00269-like protein-coding - - - - 20121230 -9606 100507162 LOC100507162 - - - 8 - uncharacterized LOC100507162 miscRNA - - - - 20121209 -9606 100507163 LINC00709 - - HGNC:44700 10 - long intergenic non-protein coding RNA 709 miscRNA LINC00709 long intergenic non-protein coding RNA 709 O - 20121207 -9606 100507165 LOC100507165 - - - 11 - uncharacterized LOC100507165 miscRNA - - - - 20121209 -9606 100507166 LOC100507166 - - - 15 - uncharacterized LOC100507166 miscRNA - - - - 20121209 -9606 100507170 CT47A12 - CT47|CT47.12 HGNC:33292|Ensembl:ENSG00000226685 X Xq24 cancer/testis antigen family 47, member A12 protein-coding CT47A12 cancer/testis antigen family 47, member A12 O cancer/testis CT47 family, member 12|cancer/testis antigen 47|cancer/testis antigen 47A|cancer/testis antigen 47A family member 20121209 -9606 100507171 BOLA3-AS1 - - HGNC:42922 2 - BOLA3 antisense RNA 1 (head to head) miscRNA BOLA3-AS1 BOLA3 antisense RNA 1 (head to head) O - 20121230 -9606 100507172 LOC100507172 - - - 6 - uncharacterized LOC100507172 protein-coding - - - - 20121209 -9606 100507173 LOC100507173 - - - 6 - uncharacterized LOC100507173 miscRNA - - - - 20121230 -9606 100507175 LOC100507175 - - - 12 - uncharacterized LOC100507175 miscRNA - - - - 20121230 -9606 100507178 SLFNL1-AS1 - - HGNC:44126 1 1p34 SLFNL1 antisense RNA 1 miscRNA SLFNL1-AS1 SLFNL1 antisense RNA 1 O - 20121230 -9606 100507191 LOC100507191 - - - 17 17q25.1 uncharacterized LOC100507191 unknown - - - - 20121230 -9606 100507194 LOC100507194 - - - 6 - uncharacterized LOC100507194 miscRNA - - - - 20121230 -9606 100507195 LOC100507195 - - - 12 - uncharacterized LOC100507195 miscRNA - - - - 20121209 -9606 100507199 LOC100507199 - - - X - uncharacterized LOC100507199 miscRNA - - - - 20121209 -9606 100507201 LOC100507201 - - - 2 - uncharacterized LOC100507201 miscRNA - - - - 20121209 -9606 100507203 SMLR1 - - HGNC:44670|Ensembl:ENSG00000256162|Vega:OTTHUMG00000176259 6 6q23.1 small leucine-rich protein 1 protein-coding SMLR1 small leucine-rich protein 1 O uncharacterized protein LOC100507203 20121230 -9606 100507205 LOC100507205 - - - 11 - uncharacterized LOC100507205 miscRNA - - - - 20121230 -9606 100507206 LOC100507206 - - - 12 - uncharacterized LOC100507206 miscRNA - - - - 20121230 -9606 100507207 LOC100507207 - - - 8 - uncharacterized LOC100507207 miscRNA - - - - 20121209 -9606 100507209 LOC100507209 - - - 4 - uncharacterized LOC100507209 unknown - - - - 20121230 -9606 100507210 LOC100507210 - - - 3 - uncharacterized LOC100507210 miscRNA - - - - 20121209 -9606 100507213 USP6NL-IT1 - - HGNC:44704 10 - USP6NL intronic transcript 1 (non-protein coding) miscRNA USP6NL-IT1 USP6NL intronic transcript 1 (non-protein coding) O - 20121208 -9606 100507217 LOC100507217 - - - 15 - uncharacterized LOC100507217 miscRNA - - - - 20121230 -9606 100507218 RNF157-AS1 - - HGNC:44127 17 - RNF157 antisense RNA 1 miscRNA RNF157-AS1 RNF157 antisense RNA 1 O - 20121230 -9606 100507221 LOC100507221 - - - 16 - uncharacterized LOC100507221 miscRNA - - - - 20121209 -9606 100507222 LOC100507222 - - - 8 - uncharacterized LOC100507222 miscRNA - - - - 20121209 -9606 100507223 LOC100507223 - - - 3 - uncharacterized LOC100507223 pseudo - - - - 20121209 -9606 100507224 LOC100507224 - - - 3 - uncharacterized LOC100507224 miscRNA - - - - 20121209 -9606 100507231 LOC100507231 - - - 11 - peptidylprolyl isomerase A (cyclophilin A) pseudogene pseudo - - - - 20121230 -9606 100507236 LOC100507236 - - - 8 - uncharacterized LOC100507236 unknown - - - - 20120710 -9606 100507240 VWA8-AS1 - - HGNC:44270 13 - VWA8 antisense RNA 1 (head to head) miscRNA VWA8-AS1 VWA8 antisense RNA 1 (head to head) O - 20121230 -9606 100507242 LOC100507242 - - - 14 - uncharacterized LOC100507242 miscRNA - - - - 20121209 -9606 100507244 LOC100507244 - - - 9 - uncharacterized LOC100507244 miscRNA - - - - 20121230 -9606 100507246 SNHG16 - - HGNC:44352 17 - small nucleolar RNA host gene 16 (non-protein coding) miscRNA SNHG16 small nucleolar RNA host gene 16 (non-protein coding) O - 20121230 -9606 100507249 C8orf17 hCG_1767091 MOST-1 HGNC:17737 8 8q24.3 chromosome 8 open reading frame 17 other C8orf17 chromosome 8 open reading frame 17 O - 20121021 -9606 100507250 LOC100507250 - - - 12 - uncharacterized LOC100507250 miscRNA - - - - 20121230 -9606 100507251 CICP6 - - HGNC:37755 3 - capicua homolog (Drosophila) pseudogene 6 pseudo CICP6 capicua homolog (Drosophila) pseudogene 6 O - 20121209 -9606 100507253 SMIM2-AS1 - C13orf44-AS1|C3orf81-AS1 HGNC:42674 13 - SMIM2 antisense RNA 1 miscRNA SMIM2-AS1 SMIM2 antisense RNA 1 O - 20121021 -9606 100507254 LOC100507254 - - - 6 - uncharacterized LOC100507254 miscRNA - - - - 20121230 -9606 100507257 MEG9 - LINC00584 HGNC:43874 14 - maternally expressed 9 (non-protein coding) miscRNA MEG9 maternally expressed 9 (non-protein coding) O - 20121230 -9606 100507258 LOC100507258 - - - 8 - uncharacterized LOC100507258 miscRNA - - - - 20121209 -9606 100507261 LOC100507261 - - - 11 - uncharacterized LOC100507261 miscRNA - - - - 20121209 -9606 100507266 LOC100507266 - - - 4 - uncharacterized LOC100507266 miscRNA - - - - 20121230 -9606 100507267 LOC100507267 - - - 5 - uncharacterized LOC100507267 miscRNA - - - - 20121209 -9606 100507274 LOC100507274 - - - 3 - uncharacterized LOC100507274 miscRNA - - - - 20121209 -9606 100507277 LOC100507277 - - - 14 - uncharacterized LOC100507277 miscRNA - - - - 20121209 -9606 100507281 LOC100507281 - - - 10 - uncharacterized LOC100507281 unknown - - - - 20120710 -9606 100507283 LOC100507283 - - - 11 - uncharacterized LOC100507283 miscRNA - - - - 20121230 -9606 100507284 LOC100507284 - - - 9 - uncharacterized LOC100507284 miscRNA - - - - 20121209 -9606 100507288 LOC100507288 - - - 15 - uncharacterized LOC100507288 miscRNA - - - - 20121209 -9606 100507290 ZNF865 - - HGNC:38705|Ensembl:ENSG00000261221|Vega:OTTHUMG00000177108 19 19q13.42 zinc finger protein 865 protein-coding ZNF865 zinc finger protein 865 O - 20121230 -9606 100507291 LOC100507291 - - - 3 - uncharacterized LOC100507291 miscRNA - - - - 20121209 -9606 100507297 TMEM44-AS1 - - HGNC:44272 3 3q29 TMEM44 antisense RNA 1 miscRNA TMEM44-AS1 TMEM44 antisense RNA 1 O - 20121230 -9606 100507299 LOC100507299 - - - 9 - uncharacterized LOC100507299 miscRNA - - - - 20121230 -9606 100507300 LOC100507300 - - - 11 - uncharacterized LOC100507300 miscRNA - - - - 20121230 -9606 100507303 LOC100507303 - - - 16 - uncharacterized LOC100507303 miscRNA - - - - 20121209 -9606 100507306 LOC100507306 - - - 4 - uncharacterized LOC100507306 miscRNA - - - - 20121209 -9606 100507308 LOC100507308 - - - 6 6q23 uncharacterized LOC100507308 miscRNA - - - - 20121230 -9606 100507311 LOC100507311 - - - 15 - uncharacterized LOC100507311 unknown - - - - 20121230 -9606 100507312 LOC100507312 - - - 7 - uncharacterized LOC100507312 miscRNA - - - - 20121209 -9606 100507316 LOC100507316 - - - 8 - uncharacterized LOC100507316 miscRNA - - - - 20121209 -9606 100507319 LOC100507319 - - - 9 - uncharacterized LOC100507319 miscRNA - - - - 20121209 -9606 100507321 ERVK13-1 - - HGNC:27548 16 16p13.3 endogenous retrovirus group K13, member 1 miscRNA ERVK13-1 endogenous retrovirus group K13, member 1 O - 20121230 -9606 100507324 LOC100507324 - - - 12 - uncharacterized LOC100507324 pseudo - - - - 20121209 -9606 100507325 LOC100507325 - - - 15 - uncharacterized LOC100507325 miscRNA - - - - 20121209 -9606 100507326 LOC100507326 - - - X - extracellular matrix protein 2-like protein-coding - - - - 20120511 -9606 100507330 LOC100507330 - - - 12 - uncharacterized LOC100507330 unknown - - - - 20121230 -9606 100507331 LOC100507331 - - - 10 - uncharacterized LOC100507331 miscRNA - - - - 20121230 -9606 100507334 LOC100507334 - - - 2 - two pore channel 3 pseudogene pseudo - - - - 20121230 -9606 100507336 LOC100507336 - - - 6 - uncharacterized LOC100507336 miscRNA - - - - 20121102 -9606 100507341 SMIM18 - - HGNC:42973|Ensembl:ENSG00000253457|Vega:OTTHUMG00000163839 8 - small integral membrane protein 18 protein-coding SMIM18 small integral membrane protein 18 O uncharacterized protein LOC100507341 20121230 -9606 100507342 LOC100507342 - - - 19 - uncharacterized LOC100507342 miscRNA - - - - 20121209 -9606 100507346 LOC100507346 - - - 9 - uncharacterized LOC100507346 miscRNA - - - - 20121230 -9606 100507347 VIM-AS1 - - HGNC:44879 10 - VIM antisense RNA 1 miscRNA VIM-AS1 VIM antisense RNA 1 O - 20121214 -9606 100507351 LOC100507351 - - - 17 - uncharacterized LOC100507351 miscRNA - - - - 20121230 -9606 100507353 LOC100507353 - - - 19 - uncharacterized LOC100507353 miscRNA - - - - 20121209 -9606 100507354 CDC42P5 - - HGNC:44429 5 - cell division cycle 42 pseudogene 5 pseudo CDC42P5 cell division cycle 42 pseudogene 5 O - 20121230 -9606 100507357 LOC100507357 - - - 16 - 60S ribosomal protein L23a-like pseudo - - - - 20121209 -9606 100507361 PCNPP5 - - HGNC:41977 13 13q14.2 PEST containing nuclear protein pseudogene 5 pseudo PCNPP5 PEST containing nuclear protein pseudogene 5 O - 20121230 -9606 100507362 LOC100507362 - - - 6 6p21.33 uncharacterized LOC100507362 miscRNA - - - - 20121230 -9606 100507363 LOC100507363 - - - 12 - uncharacterized LOC100507363 miscRNA - - - - 20121209 -9606 100507364 LOC100507364 - - - 9 - uncharacterized LOC100507364 miscRNA - - - - 20121209 -9606 100507367 LOC100507367 - - - 6 - uncharacterized LOC100507367 miscRNA - - - - 20121209 -9606 100507369 LOC100507369 - - - 7 - putative uncharacterized protein encoded by LINC00174-like protein-coding - - - - 20121209 -9606 100507373 LOC100507373 - - - 19 - uncharacterized LOC100507373 miscRNA - - - - 20121230 -9606 100507376 LOC100507376 - - - 4 - uncharacterized LOC100507376 miscRNA - - - - 20121209 -9606 100507377 LOC100507377 - - - 12 - uncharacterized LOC100507377 miscRNA - - - - 20121230 -9606 100507378 LOC100507378 - - - 16 - uncharacterized LOC100507378 miscRNA - - - - 20121209 -9606 100507379 LOC100507379 - - - 8 - RNA binding motif protein 4 pseudogene pseudo - - - - 20121230 -9606 100507381 KCNQ5-IT1 - - HGNC:41354 6 - KCNQ5 intronic transcript 1 (non-protein coding) miscRNA KCNQ5-IT1 KCNQ5 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100507384 LOC100507384 - - - 11 - uncharacterized LOC100507384 miscRNA - - - - 20121230 -9606 100507386 LOC100507386 - - - 17 - uncharacterized LOC100507386 unknown - - - - 20120710 -9606 100507387 LOC100507387 - - - 5 - uncharacterized LOC100507387 miscRNA - - - - 20121230 -9606 100507388 LOC100507388 - - - 4 - uncharacterized LOC100507388 pseudo - - - - 20121209 -9606 100507389 LOC100507389 - - - 3 3q23 uncharacterized LOC100507389 miscRNA - - - - 20121230 -9606 100507391 LOC100507391 - - - 3 3q29 uncharacterized LOC100507391 miscRNA - - - - 20121230 -9606 100507392 FLI1-AS1 - - HGNC:44177 11 - FLI1 antisense RNA 1 miscRNA FLI1-AS1 FLI1 antisense RNA 1 O - 20121230 -9606 100507393 LOC100507393 - - - 7 - putative uncharacterized protein FLJ44672-like pseudo - - - - 20121230 -9606 100507395 LOC100507395 - - - Un - uncharacterized LOC100507395 miscRNA - - - - 20121209 -9606 100507397 LOC100507397 - - - 5 - uncharacterized LOC100507397 miscRNA - - - - 20120511 -9606 100507398 INTS6-AS1 - - HGNC:42691 13 - INTS6 antisense RNA 1 miscRNA INTS6-AS1 INTS6 antisense RNA 1 O - 20121230 -9606 100507399 HCG8 UNQ6501 HCGVIII|HCGVIII-1 HGNC:21242 6 6p21.3 HLA complex group 8 unknown HCG8 HLA complex group 8 O - 20121230 -9606 100507401 LRP4-AS1 - - HGNC:44128 11 - LRP4 antisense RNA 1 miscRNA LRP4-AS1 LRP4 antisense RNA 1 O - 20121230 -9606 100507403 LOC100507403 - - - 8 - uncharacterized LOC100507403 miscRNA - - - - 20121209 -9606 100507404 TMLHE-AS1 - - HGNC:44261 X - TMLHE antisense RNA 1 miscRNA TMLHE-AS1 TMLHE antisense RNA 1 O - 20121230 -9606 100507406 LOC100507406 - - - 6 - uncharacterized LOC100507406 miscRNA - - - - 20121209 -9606 100507410 LOC100507410 - - - 17 - uncharacterized LOC100507410 miscRNA - - - - 20121230 -9606 100507412 LOC100507412 - - - 22 - uncharacterized LOC100507412 miscRNA - - - - 20121230 -9606 100507415 FAM220CP - - HGNC:43640 9 - putative SIPAR-like protein C9orf51-like pseudo FAM220CP family with sequence similarity 220, member C, pseudogene O - 20121209 -9606 100507417 LOC100507417 - - - 11 - uncharacterized LOC100507417 miscRNA - - - - 20121209 -9606 100507419 LOC100507419 - - - 16 - uncharacterized LOC100507419 miscRNA - - - - 20121230 -9606 100507420 LOC100507420 - - - 8 - uncharacterized LOC100507420 miscRNA - - - - 20121209 -9606 100507421 TMEM178B - - HGNC:44112|Ensembl:ENSG00000261115|Vega:OTTHUMG00000172737 7 7q34 transmembrane protein 178B protein-coding TMEM178B transmembrane protein 178B O - 20121230 -9606 100507422 LOC100507422 - - - 8 - ubiquitin-conjugating enzyme E2N pseudogene pseudo - - - - 20121230 -9606 100507423 MKNK1-AS1 - - HGNC:44129 1 1p33 MKNK1 antisense RNA 1 miscRNA MKNK1-AS1 MKNK1 antisense RNA 1 O - 20121230 -9606 100507424 LOC100507424 - - - 12 - uncharacterized LOC100507424 miscRNA - - - - 20121230 -9606 100507425 LOC100507425 - - - 17 - uncharacterized LOC100507425 miscRNA - - - - 20121209 -9606 100507426 LOC100507426 - - - X|Y X;Y uncharacterized LOC100507426 pseudo - - - - 20121209 -9606 100507427 LOC100507427 - - - 5 - uncharacterized LOC100507427 miscRNA - - - - 20121209 -9606 100507428 LINC00458 - - HGNC:42807 13 - long intergenic non-protein coding RNA 458 miscRNA LINC00458 long intergenic non-protein coding RNA 458 O - 20121209 -9606 100507431 LOC100507431 hCG_2032978 - - 11 11q24.3 uncharacterized LOC100507431 unknown - - - - 20121230 -9606 100507433 LOC100507433 - - - 19 - uncharacterized LOC100507433 miscRNA - - - - 20121230 -9606 100507435 LOC100507435 - - - 8 - uncharacterized LOC100507435 miscRNA - - - - 20121230 -9606 100507436 MICA DAMA-345G11.2 MIC-A|PERB11.1 HGNC:7090|MIM:600169|Ensembl:ENSG00000204520|Vega:OTTHUMG00000031073 6 6p21.33 MHC class I polypeptide-related sequence A protein-coding MICA MHC class I polypeptide-related sequence A O HLA class I antigen|MHC class I chain-related protein A|stress inducible class I homolog 20121230 -9606 100507437 LOC100507437 - - - 14 - uncharacterized LOC100507437 unknown - - - - 20121230 -9606 100507438 LOC100507438 - - - 9 - uncharacterized LOC100507438 miscRNA - - - - 20121209 -9606 100507439 LOC100507439 - - - 8 - uncharacterized LOC100507439 miscRNA - - - - 20121209 -9606 100507440 LOC100507440 - - - 17 - uncharacterized LOC100507440 miscRNA - - - - 20121209 -9606 100507443 LOC100507443 - - - 2 2q33-q35 uncharacterized LOC100507443 miscRNA - - - - 20121230 -9606 100507444 PPP1R2P1 hCG_2001578 IPP-2P|PPP1R2P HGNC:9289 6 - protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 1 pseudo PPP1R2P1 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 1 O - 20121230 -9606 100507445 LOC100507445 - - - 10 - uncharacterized LOC100507445 unknown - - - - 20121230 -9606 100507447 LOC100507447 - - - 3 - uncharacterized LOC100507447 miscRNA - - - - 20121209 -9606 100507449 LOC100507449 - - - 9 - uncharacterized LOC100507449 miscRNA - - - - 20121209 -9606 100507450 C11orf39 hCG_2045219 - HGNC:32293 11 11q25 chromosome 11 open reading frame 39 unknown C11orf39 chromosome 11 open reading frame 39 O - 20121230 -9606 100507458 LOC100507458 - - - 16 - uncharacterized LOC100507458 miscRNA - - - - 20121209 -9606 100507459 LOC100507459 - - - 20 - uncharacterized LOC100507459 miscRNA - - - - 20121209 -9606 100507460 LOC100507460 - - - 2 2q21 uncharacterized LOC100507460 unknown - - - - 20121230 -9606 100507461 LOC100507461 - - - 3 - uncharacterized LOC100507461 miscRNA - - - - 20121209 -9606 100507462 LOC100507462 - - - 6 - uncharacterized LOC100507462 protein-coding - - - uncharacterized protein LOC100507462 20121230 -9606 100507463 LOC100507463 - - - 6 - uncharacterized LOC100507463 miscRNA - - - - 20121230 -9606 100507464 LOC100507464 - - - 8 - uncharacterized LOC100507464 miscRNA - - - - 20121209 -9606 100507466 ATPBD4-AS1 - - HGNC:44147 15 - ATPBD4 antisense RNA 1 (head to head) miscRNA ATPBD4-AS1 ATPBD4 antisense RNA 1 (head to head) O - 20121230 -9606 100507468 LOC100507468 - - - 7 - uncharacterized LOC100507468 miscRNA - - - - 20121209 -9606 100507470 GRID1-AS1 - - HGNC:44131 10 - GRID1 antisense RNA 1 miscRNA GRID1-AS1 GRID1 antisense RNA 1 O - 20121230 -9606 100507472 LOC100507472 - - - 15 - uncharacterized LOC100507472 miscRNA - - - - 20121230 -9606 100507474 LOC100507474 - - - 2 - uncharacterized LOC100507474 miscRNA - - - - 20121209 -9606 100507475 IDH1-AS1 - - HGNC:40292 2 - IDH1 antisense RNA 1 miscRNA IDH1-AS1 IDH1 antisense RNA 1 O - 20121230 -9606 100507477 LOC100507477 - - - 6 - uncharacterized LOC100507477 miscRNA - - - - 20121209 -9606 100507480 LOC100507480 - - - 15 - uncharacterized LOC100507480 miscRNA - - - - 20121209 -9606 100507481 LOC100507481 - - - 8 - uncharacterized LOC100507481 miscRNA - - - - 20121209 -9606 100507483 LOC100507483 - - - 19 - uncharacterized LOC100507483 protein-coding - - - 3-AS protein 20120511 -9606 100507484 LOC100507484 - - - 12 - uncharacterized LOC100507484 miscRNA - - - - 20121209 -9606 100507486 LOC100507486 - - - 19 - uncharacterized LOC100507486 miscRNA - - - - 20121209 -9606 100507487 LOC100507487 - - - 4 - uncharacterized LOC100507487 miscRNA - - - - 20121209 -9606 100507488 DNAPTP3 - - - 2 2q34-q35 histone demethylase UTY-like unknown - - - - 20120726 -9606 100507489 LOC100507489 - - - 6 - uncharacterized LOC100507489 miscRNA - - - - 20121230 -9606 100507490 ZNF859P - - HGNC:34507 1 1p33 zinc finger protein 859, pseudogene pseudo ZNF859P zinc finger protein 859, pseudogene O - 20121230 -9606 100507494 LOC100507494 - - - 17 - uncharacterized LOC100507494 protein-coding - - - FLJ00403 protein 20121230 -9606 100507495 SDCBP2-AS1 - - HGNC:44314 20 - SDCBP2 antisense RNA 1 miscRNA SDCBP2-AS1 SDCBP2 antisense RNA 1 O - 20121230 -9606 100507498 LOC100507498 - - - 12 - uncharacterized LOC100507498 miscRNA - - - - 20121209 -9606 100507500 EGFR-AS1 - - HGNC:40207 7 - EGFR antisense RNA 1 miscRNA EGFR-AS1 EGFR antisense RNA 1 O - 20121230 -9606 100507501 LOC100507501 - - - 16 - uncharacterized LOC100507501 miscRNA - - - - 20121230 -9606 100507506 LOC100507506 - - - 6 - uncharacterized LOC100507506 miscRNA - - - - 20121230 -9606 100507507 LOC100507507 - - - 7 - uncharacterized LOC100507507 miscRNA - - - - 20121209 -9606 100507511 LOC100507511 - - - 12 - uncharacterized LOC100507511 miscRNA - - - - 20121209 -9606 100507513 LOC100507513 - - - 14 - uncharacterized LOC100507513 miscRNA - - - - 20121209 -9606 100507516 LOC100507516 - - - 8 - uncharacterized LOC100507516 unknown - - - - 20121230 -9606 100507520 LOC100507520 - - - 17 - uncharacterized LOC100507520 miscRNA - - - - 20121209 -9606 100507521 LOC100507521 - - - 11 - uncharacterized LOC100507521 miscRNA - - - - 20121209 -9606 100507524 ARHGEF26-AS1 - - HGNC:41048 3 3q25 ARHGEF26 antisense RNA 1 miscRNA ARHGEF26-AS1 ARHGEF26 antisense RNA 1 O - 20121230 -9606 100507526 LOC100507526 - - - 16 - smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene pseudo - - - - 20121230 -9606 100507527 THEG5 - - Ensembl:ENSG00000267465|Vega:OTTHUMG00000180518 19 - testis highly expressed protein 5 protein-coding - - - uncharacterized protein LOC100507527 20121230 -9606 100507528 LINC00613 - - HGNC:44060 4 - long intergenic non-protein coding RNA 613 miscRNA LINC00613 long intergenic non-protein coding RNA 613 O - 20121230 -9606 100507530 LOC100507530 hCG_2002332 - - 8 8p23.1 uncharacterized LOC100507530 unknown - - - - 20121230 -9606 100507531 LINC00836 - - HGNC:44915 10 - long intergenic non-protein coding RNA 836 miscRNA LINC00836 long intergenic non-protein coding RNA 836 O - 20121227 -9606 100507533 SOX21-AS1 - - HGNC:39807 13 13q32.1 SOX21 antisense RNA 1 (head to head) miscRNA SOX21-AS1 SOX21 antisense RNA 1 (head to head) O - 20121021 -9606 100507534 LOC100507534 - - - 16 - uncharacterized LOC100507534 miscRNA - - - - 20121209 -9606 100507535 LOC100507535 - - - 19 - uncharacterized LOC100507535 miscRNA - - - - 20121230 -9606 100507537 LOC100507537 - - - 3 3q25 uncharacterized LOC100507537 miscRNA - - - - 20121230 -9606 100507538 LOC100507538 - - - 7 - uncharacterized LOC100507538 miscRNA - - - - 20121209 -9606 100507540 LOC100507540 - - - 9 - uncharacterized LOC100507540 miscRNA - - - - 20121209 -9606 100507546 LOC100507546 - - - 5 - uncharacterized LOC100507546 unknown - - - - 20121230 -9606 100507547 LOC100507547 - - - 6 - uncharacterized LOC100507547 miscRNA - - - - 20121230 -9606 100507548 LOC100507548 - - - 11 - uncharacterized LOC100507548 unknown - - - - 20121230 -9606 100507549 HMGB3P32 - - HGNC:39335 16 - high mobility group box 3 pseudogene 32 pseudo HMGB3P32 high mobility group box 3 pseudogene 32 O - 20121230 -9606 100507551 LOC100507551 - - - 19 - uncharacterized LOC100507551 unknown - - - - 20120710 -9606 100507554 LOC100507554 - - - 2 - uncharacterized LOC100507554 miscRNA - - - - 20121209 -9606 100507556 LOC100507556 - - - 3 - putative uncharacterized protein NCRNA00269-like unknown - - - - 20121230 -9606 100507557 LOC100507557 - - - 6 - uncharacterized LOC100507557 miscRNA - - - - 20121230 -9606 100507559 LOC100507559 - - - 12 - uncharacterized LOC100507559 miscRNA - - - - 20121209 -9606 100507560 LOC100507560 - - - 12 - uncharacterized LOC100507560 miscRNA - - - - 20121209 -9606 100507561 LOC100507561 - - - 11 - ankyrin repeat domain-containing protein 33B-like pseudo - - - - 20121209 -9606 100507562 LOC100507562 - - - 2 - uncharacterized LOC100507562 miscRNA - - - - 20121209 -9606 100507564 LOC100507564 - - - 1 - uncharacterized LOC100507564 miscRNA - - - - 20121230 -9606 100507567 RAB11B-AS1 - - HGNC:44178 19 - RAB11B antisense RNA 1 miscRNA RAB11B-AS1 RAB11B antisense RNA 1 O - 20121230 -9606 100507568 LOC100507568 - - - 15 - uncharacterized LOC100507568 miscRNA - - - - 20121209 -9606 100507569 LOC100507569 - - - 15 - uncharacterized LOC100507569 pseudo - - - - 20121209 -9606 100507577 LOC100507577 - - - 16 - uncharacterized LOC100507577 miscRNA - - - - 20121230 -9606 100507579 LOC100507579 - - - 20 - uncharacterized LOC100507579 pseudo - - - - 20121209 -9606 100507580 LOC100507580 - - - 22 - uncharacterized LOC100507580 miscRNA - - - - 20121209 -9606 100507581 LOC100507581 - - - 2 - uncharacterized LOC100507581 miscRNA - - - - 20121209 -9606 100507582 BHLHE40-AS1 - - HGNC:44471 3 3p26 BHLHE40 antisense RNA 1 miscRNA BHLHE40-AS1 BHLHE40 antisense RNA 1 O - 20121230 -9606 100507583 LOC100507583 - - - 13 - uncharacterized LOC100507583 pseudo - - - - 20121209 -9606 100507584 LOC100507584 - - - 6 - uncharacterized LOC100507584 miscRNA - - - - 20121230 -9606 100507586 LOC100507586 - - - 1 - cytochrome c oxidase subunit VIIb pseudogene pseudo - - - - 20121230 -9606 100507587 FARP1-IT1 - - HGNC:39810 13 13q32.2 FARP1 intronic transcript 1 (non-protein coding) miscRNA FARP1-IT1 FARP1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100507588 TGFBR3L - TGFR-3L HGNC:44152|Ensembl:ENSG00000260001|Vega:OTTHUMG00000175717 19 19p13.2 transforming growth factor, beta receptor III-like protein-coding TGFBR3L transforming growth factor, beta receptor III-like O TGF-beta receptor type III-like protein|TGF-beta receptor type-3-like protein|transforming growth factor-beta receptor type 3-like protein|transforming growth factor-beta receptor type III-like protein 20121230 -9606 100507589 NAGPA-AS1 - - HGNC:44184 16 - NAGPA antisense RNA 1 miscRNA NAGPA-AS1 NAGPA antisense RNA 1 O - 20121230 -9606 100507594 LOC100507594 - - - 12 - uncharacterized LOC100507594 miscRNA - - - - 20121209 -9606 100507595 LOC100507595 - - - 3 - uncharacterized LOC100507595 pseudo - - - - 20121209 -9606 100507599 LOC100507599 - - - 22 - uncharacterized LOC100507599 miscRNA - - - - 20121209 -9606 100507600 LOC100507600 - - - 2 - uncharacterized LOC100507600 miscRNA - - - - 20121230 -9606 100507601 GRM7-AS3 - - HGNC:42444 3 - GRM7 antisense RNA 3 miscRNA GRM7-AS3 GRM7 antisense RNA 3 O - 20121021 -9606 100507602 LOC100507602 - - - 5 - uncharacterized LOC100507602 miscRNA - - - - 20121230 -9606 100507605 LINC00837 - - HGNC:27436 10 10p12.1 long intergenic non-protein coding RNA 837 miscRNA LINC00837 long intergenic non-protein coding RNA 837 O - 20121230 -9606 100507606 LOC100507606 - - - 11 - ankyrin repeat domain-containing protein 33B-like pseudo - - - - 20121209 -9606 100507607 LOC100507607 - - Ensembl:ENSG00000196993|Vega:OTTHUMG00000170452 16 - nuclear pore complex-interacting protein-like 2-like protein-coding - - - - 20121209 -9606 100507608 KRTAP9-6 - KAP9.6|KRTAP9.6|KRTAP9L2 HGNC:18914|Ensembl:ENSG00000212659|Vega:OTTHUMG00000133600 17 17q12-q21 keratin associated protein 9-6 protein-coding KRTAP9-6 keratin associated protein 9-6 O keratin associated protein 9-like 2|keratin-associated protein 9-6|putative keratin-associated protein 9-2-like 2 20121230 -9606 100507612 LINC00402 - - HGNC:42732 13 - long intergenic non-protein coding RNA 402 miscRNA LINC00402 long intergenic non-protein coding RNA 402 O - 20121209 -9606 100507616 LOC100507616 - - - 12 - uncharacterized LOC100507616 miscRNA - - - - 20121209 -9606 100507617 PPP1R14BP3 - - HGNC:16330 4 - protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 3 pseudo PPP1R14BP3 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 3 O - 20121230 -9606 100507629 LINC00658 - - HGNC:44315 20 - long intergenic non-protein coding RNA 658 miscRNA LINC00658 long intergenic non-protein coding RNA 658 O - 20121230 -9606 100507630 LOC100507630 - - - 2 - uncharacterized LOC100507630 unknown - - - - 20121230 -9606 100507632 LOC100507632 - - - 8 - uncharacterized LOC100507632 miscRNA - - - - 20121230 -9606 100507633 LOC100507633 - - - 10 - uncharacterized LOC100507633 miscRNA - - - - 20121209 -9606 100507634 LOC100507634 - - - 1 1p32.3 uncharacterized LOC100507634 miscRNA - - - - 20121230 -9606 100507637 LOC100507637 - - - 22 - uncharacterized LOC100507637 unknown - - - - 20120622 -9606 100507639 LOC100507639 - - - 4 - uncharacterized LOC100507639 miscRNA - - - - 20121209 -9606 100507642 LOC100507642 - - - 7 - uncharacterized LOC100507642 miscRNA - - - - 20121209 -9606 100507646 LOC100507646 UNQ6167 - - 19 19q13.2 uncharacterized LOC100507646 unknown - - - - 20121230 -9606 100507648 CICP15 - - HGNC:38549 5 - capicua homolog (Drosophila) pseudogene 15 pseudo CICP15 capicua homolog (Drosophila) pseudogene 15 O - 20121209 -9606 100507650 C14orf164 hCG_1815045 - HGNC:20438|Ensembl:ENSG00000215277|Vega:OTTHUMG00000149918 14 14q11.2 chromosome 14 open reading frame 164 protein-coding C14orf164 chromosome 14 open reading frame 164 O RING finger protein C14orf164|RING finger protein C14orf164-like 20121230 -9606 100507651 LOC100507651 - - - 8 - uncharacterized LOC100507651 miscRNA - - - - 20121230 -9606 100507652 LOC100507652 - - - 1 - uncharacterized LOC100507652 miscRNA - - - - 20121209 -9606 100507654 LOC100507654 - - - 13 - uncharacterized LOC100507654 unknown - - - - 20121230 -9606 100507656 LOC100507656 - - - 17 - uncharacterized LOC100507656 protein-coding - - - - 20121209 -9606 100507657 LOC100507657 - - - 22 - uncharacterized LOC100507657 miscRNA - - - - 20121209 -9606 100507660 SRGAP3-AS2 - - HGNC:40899 3 - SRGAP3 antisense RNA 2 miscRNA SRGAP3-AS2 SRGAP3 antisense RNA 2 O - 20121021 -9606 100507661 LOC100507661 - - - 3 - uncharacterized LOC100507661 miscRNA - - - - 20121209 -9606 100507662 LOC100507662 - - - 6 - uncharacterized LOC100507662 miscRNA - - - - 20120726 -9606 100507663 LOC100507663 - - - 10 - uncharacterized LOC100507663 unknown - - - - 20121230 -9606 100507664 LOC100507664 - - - 1 1p31 uncharacterized LOC100507664 unknown - - - - 20121230 -9606 100507670 LOC100507670 - - - 1 - uncharacterized LOC100507670 miscRNA - - - - 20121209 -9606 100507672 LOC100507672 - - - 6 - uncharacterized LOC100507672 miscRNA - - - - 20121209 -9606 100507674 MARK2P9 - - HGNC:39800 10 10q23.33 MAP/microtubule affinity-regulating kinase 2 pseudogene 9 pseudo MARK2P9 MAP/microtubule affinity-regulating kinase 2 pseudogene 9 O - 20121230 -9606 100507679 MUC22 - PBMUCL1 HGNC:39755|MIM:613917|Ensembl:ENSG00000261272|Vega:OTTHUMG00000133673 6 6p21.33 mucin 22 protein-coding MUC22 mucin 22 O mucin-22|panbronchiolitis related mucin-like 1|panbronchiolitis-related mucin-like protein 1 20121230 -9606 100507703 LOC100507703 DADB-123D8.3 - - 6 - HLA class I histocompatibility antigen, A-69 alpha chain-like protein-coding - - - MHC class I antigen|major histocompatibility complex, class I, A 20121216 -9606 100507709 LOC100507709 - - - 6 - HLA class II histocompatibility antigen, DRB1-7 beta chain-like protein-coding - - - - 20121102 -9606 100507714 LOC100507714 - - - 6 - HLA class II histocompatibility antigen, DRB1-7 beta chain-like protein-coding - - - HLA class II histocompatibility antigen, DRB1-9 beta chain-like 20121110 -9606 100507739 ERVK3-1 - - HGNC:30466 19 - endogenous retrovirus group K3, member 1 unknown ERVK3-1 endogenous retrovirus group K3, member 1 O - 20121021 -9606 100507747 LOC100507747 - - - 13 - uncharacterized LOC100507747 protein-coding - - - - 20121102 -9606 100507759 LOC100507759 - - - 16 - uncharacterized LOC100507759 miscRNA - - - - 20121102 -9606 100507762 LOC100507762 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100507803 LOC100507803 - - - 16 - uncharacterized LOC100507803 miscRNA - - - - 20121102 -9606 100507855 LOC100507855 - - - 12 - adenylate kinase isoenzyme 4, mitochondrial-like protein-coding - - - - 20121222 -9606 100507884 LOC100507884 - - - 17 - ubiquitin-40S ribosomal protein S27a-like pseudo - - - - 20121209 -9606 100507918 LOC100507918 - - - 16 - uncharacterized LOC100507918 miscRNA - - - - 20121102 -9606 100507930 LOC100507930 - - - 4 - uncharacterized LOC100507930 miscRNA - - - - 20121102 -9606 100507948 LOC100507948 - - - 2 - uncharacterized LOC100507948 miscRNA - - - - 20121230 -9606 100507965 LOC100507965 - - - 3 - uncharacterized LOC100507965 pseudo - - - - 20121102 -9606 100507995 LOC100507995 - - - 6 - putative POM121-like protein 1-like pseudo - - - - 20121102 -9606 100508046 LOC100508046 - - - 14 - uncharacterized LOC100508046 unknown - - - - 20121230 -9606 100508120 LOC100508120 - - - 6 - uncharacterized LOC100508120 miscRNA - - - - 20121230 -9606 100508175 LOC100508175 - - - 5 - uncharacterized LOC100508175 pseudo - - - - 20121102 -9606 100508226 LOC100508226 UNQ751 - - 3 - HHSL751 unknown - - - - 20121230 -9606 100508227 LOC100508227 - - - 3 - uncharacterized LOC100508227 unknown - - - - 20121230 -9606 100508329 LOC100508329 - - - 12 - uncharacterized LOC100508329 miscRNA - - - - 20121102 -9606 100508383 LOC100508383 - - - 3 - uncharacterized LOC100508383 protein-coding - - - - 20121102 -9606 100508384 LOC100508384 - - - 12 - uncharacterized LOC100508384 protein-coding - - - - 20121102 -9606 100508408 LOC100508408 - - - 11 - uncharacterized LOC100508408 miscRNA - - - - 20121117 -9606 100508432 LOC100508432 - - - Un - putative trypsin-6-like pseudo - - - - 20121102 -9606 100508483 LOC100508483 - - - 3 - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100508631 LOC100508631 - - - 4 - uncharacterized LOC100508631 miscRNA - - - - 20121102 -9606 100508689 LOC100508689 - - - 11 - mucin protein-coding - - - - 20120710 -9606 100508697 LOC100508697 - - - Y - tubulin beta-8 chain-like pseudo - - - - 20121102 -9606 100508728 LOC100508728 - - - 7 - uncharacterized LOC100508728 pseudo - - - - 20121102 -9606 100508734 LOC100508734 - - - Un - ankyrin repeat domain-containing protein SOWAHC-like pseudo - - - - 20121102 -9606 100508736 LOC100508736 - - - 11 - uncharacterized LOC100508736 protein-coding - - - - 20121221 -9606 100508750 LOC100508750 - - - Y - adenylate kinase isoenzyme 6-like pseudo - - - - 20121102 -9606 100508751 LOC100508751 - - - 2 - uncharacterized LOC100508751 miscRNA - - - - 20121102 -9606 100508781 LOC100508781 - - - 7 - protein FAM115A-like protein-coding - - - - 20121102 -9606 100508782 LOC100508782 - - - Un - inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like pseudo - - - - 20121120 -9606 100508803 LOC100508803 - - - Un - uncharacterized LOC100508803 pseudo - - - - 20121102 -9606 100509072 LOC100509072 - - - 2 - uncharacterized LOC100509072 protein-coding - - - - 20120710 -9606 100509091 LOC100509091 - - - X - extracellular matrix protein 2-like protein-coding - - - - 20121209 -9606 100509116 LOC100509116 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100509195 LOC100509195 - - - 1 - uncharacterized LOC100509195 miscRNA - - - - 20121209 -9606 100509196 LOC100509196 - - - 21 - putative uncharacterized protein encoded by LINC00205-like protein-coding - - - - 20121102 -9606 100509205 LOC100509205 - - - 1 - uncharacterized LOC100509205 miscRNA - - - - 20121209 -9606 100509240 LOC100509240 - - - 4 - uncharacterized LOC100509240 miscRNA - - - - 20121102 -9606 100509247 LOC100509247 - - - 7 - protein FAM27E2-like protein-coding - - - - 20121209 -9606 100509290 LOC100509290 hCG_95695 - - 17 - DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene pseudo - - - - 20121230 -9606 100509303 LOC100509303 - - - 1 - uncharacterized LOC100509303 miscRNA - - - - 20121209 -9606 100509315 LOC100509315 - - - 18 - uncharacterized LOC100509315 miscRNA - - - - 20121102 -9606 100509340 LOC100509340 - - - Y - testis-specific Y-encoded protein 2-like pseudo - - - - 20121102 -9606 100509370 LOC100509370 - - - 12 - 39S ribosomal protein L21, mitochondrial-like pseudo - - - - 20121209 -9606 100509378 LOC100509378 - - - 1 - uncharacterized LOC100509378 protein-coding - - - - 20121102 -9606 100509398 LOC100509398 - - - 3 - cytochrome c, somatic-like pseudo - - - - 20121209 -9606 100509413 LOC100509413 - - - 11 - uncharacterized LOC100509413 miscRNA - - - - 20121102 -9606 100509445 LOC100509445 - - - 12 - uncharacterized LOC100509445 miscRNA - - - - 20121102 -9606 100509457 LOC100509457 - - - Un - HLA class II histocompatibility antigen, DQ alpha 1 chain-like protein-coding - - - - 20121102 -9606 100509484 LOC100509484 - - - 9 - uncharacterized LOC100509484 miscRNA - - - - 20121209 -9606 100509487 LOC100509487 - - - 18 - uncharacterized LOC100509487 miscRNA - - - - 20121102 -9606 100509490 LOC100509490 - - - 2 - uncharacterized LOC100509490 protein-coding - - - - 20121102 -9606 100509510 LOC100509510 - - - Y - cyclin-dependent kinase 2-associated protein 2-like pseudo - - - - 20121102 -9606 100509512 LOC100509512 - - - 2 - uncharacterized LOC100509512 pseudo - - - - 20121102 -9606 100509541 LOC100509541 - - - 12 - uncharacterized LOC100509541 miscRNA - - - - 20121102 -9606 100509542 LOC100509542 - - - 6 - uncharacterized LOC100509542 protein-coding - - - - 20121102 -9606 100509553 LOC100509553 - - - 14 - ETS domain-containing protein Elk-1-like pseudo - - - - 20121102 -9606 100509620 LOC100509620 - - - 2 - aquaporin-7-like protein-coding - - - - 20121102 -9606 100509621 LOC100509621 - - - 3 - uncharacterized LOC100509621 miscRNA - - - - 20121102 -9606 100509635 LOC100509635 - - - 10 - uncharacterized LOC100509635 miscRNA - - - - 20121102 -9606 100509638 LOC100509638 - - - 9 - protein FAM27D1-like protein-coding - - - - 20121102 -9606 100509646 LOC100509646 - - - Y - PTPN13-like protein, Y-linked-like protein-coding - - - - 20121102 -9606 100509686 LOC100509686 - - - 9 - protein FAM27D1-like protein-coding - - - - 20121102 -9606 100509764 LOC100509764 - - - 12 - uncharacterized LOC100509764 miscRNA - - - - 20121102 -9606 100509780 LOC100509780 - - - 5 - uncharacterized LOC100509780 unknown - - - - 20121230 -9606 100509814 LOC100509814 - - - 10 - uncharacterized LOC100509814 unknown - - - - 20120710 -9606 100509853 LOC100509853 - - - Y - putative uncharacterized protein FLJ44672-like pseudo - - - - 20121102 -9606 100509857 LOC100509857 - - - 8 - keratin, type II cytoskeletal 8-like pseudo - - - - 20121209 -9606 100509860 LOC100509860 - - - 20 - uncharacterized LOC100509860 protein-coding - - - - 20121102 -9606 100509861 LOC100509861 - - - 20 - uncharacterized LOC100509861 protein-coding - - - - 20121102 -9606 100509894 CPB2-AS1 - - HGNC:39898 13 - CPB2 antisense RNA 1 miscRNA CPB2-AS1 CPB2 antisense RNA 1 O - 20121230 -9606 100509927 HIST1H2APS6 hCG_1643984 - HGNC:42647 13 13q13.3 histone cluster 1, H2a, pseudogene 6 pseudo HIST1H2APS6 histone cluster 1, H2a, pseudogene 6 O - 20121230 -9606 100509937 LOC100509937 - - - 7 - centromere protein S-like pseudo - - - - 20121102 -9606 100509976 LOC100509976 - - - 12 - uncharacterized LOC100509976 miscRNA - - - - 20121102 -9606 100509988 LOC100509988 - - - 10 - uncharacterized LOC100509988 pseudo - - - - 20121209 -9606 100509997 LOC100509997 - - - 7 - protein FAM27D1-like pseudo - - - - 20121102 -9606 100510007 LOC100510007 - - - 7 - uncharacterized LOC100510007 miscRNA - - - - 20121102 -9606 100510701 LOC100510701 - - - 9 - uncharacterized LOC100510701 miscRNA - - - - 20121102 -9606 100510707 LOC100510707 - - - 17 - TBC1 domain family member 3H-like protein-coding - - - - 20121102 -9606 100510709 LOC100510709 - - - 6 - ADP/ATP translocase 2-like pseudo - - - - 20121102 -9606 100510710 LOC100510710 - - - 1 - glucosylceramidase-like pseudo - - - - 20121102 -9606 100510713 LOC100510713 - - - 17 - protein FAM182A-like pseudo - - - - 20121102 -9606 100526416 AK4P5 - - HGNC:39068 6 - adenylate kinase 4 pseudogene 5 pseudo AK4P5 adenylate kinase 4 pseudogene 5 O - 20121230 -9606 100526648 MIR1273E - hsa-mir-1273e miRBase:MI0016059 - - microRNA mir-1273e miscRNA - - - - 20120318 -9606 100526656 LOC100526656 - - - 10 10q guanine nucleotide binding protein (G protein), gamma 10 pseudogene pseudo - - - - 20121230 -9606 100526664 LY75-CD302 - - HGNC:38828|Ensembl:ENSG00000054219|Ensembl:ENSG00000248672|Vega:OTTHUMG00000161661 2 2q LY75-CD302 readthrough protein-coding LY75-CD302 LY75-CD302 readthrough O DEC-205/DCL-1 fusion|LY75-CD302 fusion protein 20121230 -9606 100526693 ARPC4-TTLL3 - - HGNC:38830|Ensembl:ENSG00000250151|Vega:OTTHUMG00000161408 3 3p ARPC4-TTLL3 readthrough protein-coding ARPC4-TTLL3 ARPC4-TTLL3 readthrough O ARPC4-TTLL3 fusion protein|ARPC4-TTLL3 read-through transcript 20121230 -9606 100526694 MSANTD3-TMEFF1 - C9orf3-TMEFF1|C9orf30-TMEFF1 HGNC:38838|Ensembl:ENSG00000241697|Ensembl:ENSG00000251349|Vega:OTTHUMG00000161540 9 9q MSANTD3-TMEFF1 readthrough protein-coding MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough O C9orf30-TMEFF1 fusion protein 20121230 -9606 100526735 LOC100526735 - - - 4 - crystallin, zeta (quinone reductase) pseudogene pseudo - - - - 20121230 -9606 100526736 LOC100526736 - - - 4 - quinone oxidoreductase-like protein 2 pseudogene pseudo - - - - 20121230 -9606 100526737 RBM14-RBM4 hCG_20662 COAZ HGNC:38840|Ensembl:ENSG00000248643|Vega:OTTHUMG00000160813 11 11q RBM14-RBM4 readthrough protein-coding RBM14-RBM4 RBM14-RBM4 readthrough O RBM14-RBM4 protein|RBM14/RBM4 fusion|transcriptional coactivator CoAZ 20121230 -9606 100526738 SUMO2P5 - - HGNC:39015 5 - SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 5 pseudo SUMO2P5 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 5 O - 20121230 -9606 100526739 APITD1-CORT RP5-1113E3.1 - HGNC:38843|Ensembl:ENSG00000175279|Ensembl:ENSG00000251503|Vega:OTTHUMG00000162436 1 1p APITD1-CORT readthrough protein-coding APITD1-CORT APITD1-CORT readthrough O APITD1-CORT protein 20121230 -9606 100526740 ATP5J2-PTCD1 - - HGNC:38844|Ensembl:ENSG00000106246|Ensembl:ENSG00000248919|Vega:OTTHUMG00000160779 7 7q ATP5J2-PTCD1 readthrough protein-coding ATP5J2-PTCD1 ATP5J2-PTCD1 readthrough O ATP5J2-PTCD1 fusion protein|ATP5J2-PTCD1 read-through transcript 20121230 -9606 100526741 DEL8Q13 - C8DELq13 MIM:600383 8 8q13 Mesomelia-synostoses syndrome unknown - - - - 20120622 -9606 100526742 DEL16P12.1P11.2 - C16DELp12.1p11.2 MIM:613604 16 16q12.2-p11.2 Chromosome 16p12.2-p11.2 deletion syndrome unknown - - - - 20120622 -9606 100526743 DUP17Q23.1Q23.2 - C17DUPq23.1q23.2 MIM:613618 17 17q23.1-q23.2 Chromosome 17q23.1-q23.2 duplication syndrome unknown - - - - 20120622 -9606 100526760 ABHD14A-ACY1 - - HGNC:38856|Ensembl:ENSG00000114786|Vega:OTTHUMG00000166447 3 3p ABHD14A-ACY1 readthrough (non-protein coding) miscRNA ABHD14A-ACY1 ABHD14A-ACY1 readthrough (non-protein coding) O - 20121230 -9606 100526761 CCDC169-SOHLH2 - C13orf38-SOHLH2 HGNC:38866|Ensembl:ENSG00000120669|Ensembl:ENSG00000250709|Vega:OTTHUMG00000162258 13 13q CCDC169-SOHLH2 readthrough protein-coding CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough O CCDC169-SOHLH2 protein 20121230 -9606 100526767 RNF103-CHMP3 - RNF103-VPS24 HGNC:38847|Ensembl:ENSG00000115561|Ensembl:ENSG00000249884|Vega:OTTHUMG00000160822 2 2p RNF103-CHMP3 readthrough protein-coding RNF103-CHMP3 RNF103-CHMP3 readthrough O RNF103-CHMP3 protein|RNF103-CHMP3 read-through|RNF103-VPS24 readthrough 20121230 -9606 100526771 TMPRSS4-AS1 - - HGNC:44179 11 - TMPRSS4 antisense RNA 1 miscRNA TMPRSS4-AS1 TMPRSS4 antisense RNA 1 O - 20121230 -9606 100526772 TMEM110-MUSTN1 - - HGNC:38834|Ensembl:ENSG00000248592|Vega:OTTHUMG00000160756 3 - TMEM110-MUSTN1 readthrough protein-coding TMEM110-MUSTN1 TMEM110-MUSTN1 readthrough O TMEM110-MUSTN1 fusion protein|TMEM110-MUSTN1 read-through transcript 20121230 -9606 100526773 EPPIN-WFDC6 - SPINLW1-WFDC6 HGNC:38825|Ensembl:ENSG00000101448|Ensembl:ENSG00000249139|Vega:OTTHUMG00000161548 20 20q EPPIN-WFDC6 readthrough protein-coding EPPIN-WFDC6 EPPIN-WFDC6 readthrough O SPINLW1-WFDC6 fusion protein|SPINLW1-WFDC6 read-through transcript|SPINLW1-WFDC6 readthrough 20121230 -9606 100526776 CSNK1A1P3 - - HGNC:38669 5 - casein kinase 1, alpha 1 pseudogene 3 pseudo CSNK1A1P3 casein kinase 1, alpha 1 pseudogene 3 O - 20121230 -9606 100526783 C15orf38-AP3S2 - - HGNC:38824|Ensembl:ENSG00000250021|Vega:OTTHUMG00000162161 15 15q C15orf38-AP3S2 readthrough protein-coding C15orf38-AP3S2 C15orf38-AP3S2 readthrough O C15orf38-AP3S2 fusion protein 20121230 -9606 100526790 TST1 - - MIM:613636 11 11p14 Tuberculin skin test reactivity, absence of unknown - - - - 20120622 -9606 100526791 DEL19P13.13 - C19DELp13.13|C19DUPp13.13|DUP19p13.13 MIM:613638 19 19p13.13 Chromosome 19p13.13 deletion syndrome unknown - - - - 20120622 -9606 100526793 CKS1BP5 - - HGNC:17640 5 - CDC28 protein kinase regulatory subunit 1B pseudogene 5 pseudo CKS1BP5 CDC28 protein kinase regulatory subunit 1B pseudogene 5 O - 20121230 -9606 100526794 NT5C1B-RDH14 - - HGNC:38831|Ensembl:ENSG00000250741|Vega:OTTHUMG00000161546 2 2p NT5C1B-RDH14 readthrough protein-coding NT5C1B-RDH14 NT5C1B-RDH14 readthrough O NT5C1B-RDH14 protein|NT5C1B-RDH14 read-through transcript 20121230 -9606 100526820 CAHM - LINC00468 HGNC:42860 6 - colon adenocarcinoma hypermethylated (non-protein coding) miscRNA CAHM colon adenocarcinoma hypermethylated (non-protein coding) O - 20121230 -9606 100526823 TST2 - - MIM:613637 5 5p15 Tuberculin skin test reactivity QTL unknown - - - - 20120622 -9606 100526825 INMT-FAM188B - - HGNC:41995|Ensembl:ENSG00000254959|Vega:OTTHUMG00000022897 7 7p INMT-FAM188B readthrough (non-protein coding) miscRNA INMT-FAM188B INMT-FAM188B readthrough (non-protein coding) O - 20121230 -9606 100526830 SLX1A-SULT1A3 - - HGNC:44437 16 16p SLX1A-SULT1A3 readthrough (non-protein coding) miscRNA SLX1A-SULT1A3 SLX1A-SULT1A3 readthrough (non-protein coding) O - 20121230 -9606 100526831 SLX1B-SULT1A4 - - - 16 16p SLX1B-SULT1A4 readthrough miscRNA - - - - 20121230 -9606 100526832 PHOSPHO2-KLHL23 - - Ensembl:ENSG00000213160|Vega:OTTHUMG00000132213 2 2q PHOSPHO2-KLHL23 readthrough protein-coding - - - kelch-like protein 23 20121230 -9606 100526833 SEPT5-GP1BB - - - 22 22q SEPT5-GP1BB readthrough miscRNA - - - - 20121230 -9606 100526835 FPGT-TNNI3K - - HGNC:42952|Ensembl:ENSG00000116783|Ensembl:ENSG00000259030|Vega:OTTHUMG00000166281 1 1p31.1 FPGT-TNNI3K readthrough protein-coding FPGT-TNNI3K FPGT-TNNI3K readthrough O FPGT-TNNI3K fusion protein 20121230 -9606 100526836 BLOC1S5-TXNDC5 hCG_2043289 MUTED-TXNDC5 HGNC:42001|Ensembl:ENSG00000259040|Vega:OTTHUMG00000171453 6 6p BLOC1S5-TXNDC5 readthrough (non-protein coding) miscRNA BLOC1S5-TXNDC5 BLOC1S5-TXNDC5 readthrough (non-protein coding) O - 20121230 -9606 100526837 EEF1E1-MUTED - - - 6 6p EEF1E1-MUTED readthrough miscRNA - - - - 20121230 -9606 100526838 LOC100526838 - - - 16 16q chromosome 18 open reading frame 32 pseudogene pseudo - - - - 20121230 -9606 100526839 LOC100526839 - - - 1 1q chromosome 18 open reading frame 32 pseudogene pseudo - - - - 20121230 -9606 100526840 LOC100526840 - - - 2 2q chromosome 18 open reading frame 32 pseudogene pseudo - - - - 20121230 -9606 100526841 LOC100526841 - - - 2 2q chromosome 18 open reading frame 32 pseudogene pseudo - - - - 20121230 -9606 100526842 RPL17-C18orf32 - - HGNC:44661|Ensembl:ENSG00000215472|Vega:OTTHUMG00000179689 18 18q RPL17-C18orf32 readthrough protein-coding RPL17-C18orf32 RPL17-C18orf32 readthrough O RPL17-C18orf32 protein 20121230 -9606 100527943 TGIF2-C20orf24 - - HGNC:44664|Ensembl:ENSG00000259399|Vega:OTTHUMG00000032382 20 20q TGIF2-C20orf24 readthrough protein-coding TGIF2-C20orf24 TGIF2-C20orf24 readthrough O TGIF2-C20orf24 protein 20121230 -9606 100527945 NDUFA12P1 - - HGNC:39419 13 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 pseudogene 1 pseudo NDUFA12P1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 pseudogene 1 O - 20121230 -9606 100527946 LOC100527946 - - - 12 - programmed cell death 5 pseudogene pseudo - - - - 20121230 -9606 100527947 LOC100527947 - - - 5 - programmed cell death 5 pseudogene pseudo - - - - 20121230 -9606 100527948 HMGB1P27 - - HGNC:39118 2 - high mobility group box 1 pseudogene 27 pseudo HMGB1P27 high mobility group box 1 pseudogene 27 O - 20121230 -9606 100527949 GIMAP1-GIMAP5 - - - 7 7q GIMAP1-GIMAP5 readthrough protein-coding - - - GIMAP1-GIMAP5 protein 20121230 -9606 100527950 GJA9-MYCBP - - - 1 1p GJA9-MYCBP readthrough miscRNA - - - - 20121230 -9606 100527960 HEATR8-TTC4 - - - 1 1p HEATR8-TTC4 readthrough miscRNA - - - - 20121230 -9606 100527961 LRRFIP1P1 - - HGNC:32937 3 - leucine rich repeat (in FLII) interacting protein 1 pseudogene 1 pseudo LRRFIP1P1 leucine rich repeat (in FLII) interacting protein 1 pseudogene 1 O - 20121230 -9606 100527963 PMF1-BGLAP - PMF1 HGNC:42953|Ensembl:ENSG00000160783|Ensembl:ENSG00000260238|Vega:OTTHUMG00000014817 1 1q PMF1-BGLAP readthrough protein-coding PMF1-BGLAP PMF1-BGLAP readthrough O PMF1-BGLAP protein|polyamine-modulated factor 1 20121230 -9606 100527964 LOC100527964 - - - 1 - uncharacterized LOC100527964 miscRNA - - - - 20121230 -9606 100527978 TMEM56-RWDD3 - - Ensembl:ENSG00000152078|Vega:OTTHUMG00000010847 1 1p TMEM56-RWDD3 readthrough protein-coding - - - TMEM56-RWDD3 protein 20121230 -9606 100528006 DPPA5P3 - - HGNC:44688 10 10p15 developmental pluripotency associated 5 pseudogene 3 pseudo DPPA5P3 developmental pluripotency associated 5 pseudogene 3 O - 20121230 -9606 100528007 C10orf32-AS3MT - - - 10 10q C10orf32-AS3MT readthrough miscRNA - - - - 20121230 -9606 100528016 TMX2-CTNND1 - - HGNC:41992|Ensembl:ENSG00000254462|Vega:OTTHUMG00000167384 11 - TMX2-CTNND1 readthrough (non-protein coding) miscRNA TMX2-CTNND1 TMX2-CTNND1 readthrough (non-protein coding) O - 20121230 -9606 100528017 SAA2-SAA4 - - HGNC:39550|Ensembl:ENSG00000255071|Vega:OTTHUMG00000166482 11 11p15.1 SAA2-SAA4 readthrough protein-coding SAA2-SAA4 SAA2-SAA4 readthrough O SAA2-SAA2 protein|SAA2-SAA2 read-through transcript 20121230 -9606 100528018 ARL2-SNX15 - - - 11 11q ARL2-SNX15 readthrough miscRNA - - - - 20121230 -9606 100528019 HSPB2-C11orf52 - - HGNC:41996|Vega:OTTHUMG00000166887 11 11q HSPB2-C11orf52 readthrough (non-protein coding) miscRNA HSPB2-C11orf52 HSPB2-C11orf52 readthrough (non-protein coding) O - 20121230 -9606 100528020 FAM187A - - HGNC:35153 17 17q21.31 family with sequence similarity 187, member A protein-coding FAM187A family with sequence similarity 187, member A O Ig-like V-type domain-containing protein FAM187A 20121120 -9606 100528021 ST20-MTHFS - - HGNC:44655|Ensembl:ENSG00000259332|Vega:OTTHUMG00000172077 15 15q25.1 ST20-MTHFS readthrough protein-coding ST20-MTHFS ST20-MTHFS readthrough O ST20-MTHFS protein 20121230 -9606 100528022 BLOC1S1-RDH5 - - - 12 12q BLOC1S1-RDH5 readthrough miscRNA - - - - 20121230 -9606 100528023 PPR1 - PPR MIM:132100 6 6p21.1 Photoparoxysmal response 1 unknown - - - - 20120622 -9606 100528024 DEL11P13 - C11DELp13|WAGR MIM:194072 11 11p13 Wilms tumor, aniridia, genitourinary anomalies and mental retardation syndrome unknown - - - - 20120622 -9606 100528025 SXGQTL1 - - MIM:613498 17 17p13 Sex hormone-binding blobulin circulating level QTL 1 unknown - - - - 20120622 -9606 100528026 DEL4Q21 - C4DELq21 MIM:613509 4 4q21 Chromosome 4q21 deletion syndrome unknown - - - - 20120622 -9606 100528027 RJBS - - MIM:613658 2 2q36.2 Rajab syndrome unknown - - - - 20120622 -9606 100528030 POC1B-GALNT4 - - HGNC:42957|Ensembl:ENSG00000259075|Vega:OTTHUMG00000171333 12 12q POC1B-GALNT4 readthrough protein-coding POC1B-GALNT4 POC1B-GALNT4 readthrough O POC1B-GALNT4 fusion|POC1B-GALNT4 protein 20121230 -9606 100528031 FKBP1A-SDCBP2 - - HGNC:41997|Ensembl:ENSG00000234684|Vega:OTTHUMG00000031671 20 20p13 FKBP1A-SDCBP2 readthrough (non-protein coding) miscRNA FKBP1A-SDCBP2 FKBP1A-SDCBP2 readthrough (non-protein coding) O - 20121230 -9606 100528032 KLRC4-KLRK1 - - - 12 12p KLRC4-KLRK1 readthrough protein-coding - - - NK cell receptor D|NKG2-D type II integral membrane protein|NKG2-D-activating NK receptor|killer cell lectin-like receptor subfamily K member 1 20121230 -9606 100528061 LOC100528061 - - - 5 5q15 gamma-glutamylcyclotransferase pseudogene pseudo - - - - 20121230 -9606 100528062 ARMCX5-GPRASP2 - - HGNC:42000 X Xq22.1 ARMCX5-GPRASP2 readthrough protein-coding ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough O G-protein coupled receptor-associated sorting protein 2 20121230 -9606 100528063 LOC100528063 - - - 2 2p16 gamma-glutamylcyclotransferase pseudogene pseudo - - - - 20121230 -9606 100528064 NEDD8-MDP1 - - HGNC:39551|Ensembl:ENSG00000255526|Vega:OTTHUMG00000167107 14 14q NEDD8-MDP1 readthrough protein-coding NEDD8-MDP1 NEDD8-MDP1 readthrough O NEDD8-MDP1 protein|NEDD8-MDP1 read-through transcript 20121230 -9606 100529052 LOC100529052 - - - 20 20p11 gamma-glutamylcyclotransferase pseudogene pseudo - - - - 20121230 -9606 100529063 BCL2L2-PABPN1 - - HGNC:42959|Ensembl:ENSG00000258643|Vega:OTTHUMG00000171498 14 14q BCL2L2-PABPN1 readthrough protein-coding BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough O BCL2L2-PABPN1 protein 20121230 -9606 100529067 SERF2-C15ORF63 hCG_2003792 - - 15 15q SERF2-C15orf63 readthrough miscRNA - - - - 20121230 -9606 100529097 RPL36A-HNRNPH2 - - Ensembl:ENSG00000257529|Vega:OTTHUMG00000170052 X Xq22 RPL36A-HNRNPH2 readthrough protein-coding - - - RPL36A-HNRNPH2 protein 20121230 -9606 100529099 DUP2Q31.1 - C2DUPq31.1 MIM:613681 2 2q31.1 Chromosome 2q31.1 duplication syndrome unknown - - - - 20120622 -9606 100529111 LOC100529111 - - - 2 2p22 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) pseudogene pseudo - - - - 20121230 -9606 100529118 AUTSX4 - CXDELp22.11 MIM:300830 X Xp22.11 Autism, X-linked, susceptibility to, 4 unknown - - - - 20120622 -9606 100529119 SCLL - - MIM:613523 8 8p11 Chromosome 8p11 myeloproliferative syndrome unknown - - - - 20120622 -9606 100529141 LGTN - - HGNC:39494|MIM:151625 - - ligatin protein-coding LGTN ligatin O - 20120318 -9606 100529144 CORO7-PAM16 - - HGNC:44424|Ensembl:ENSG00000103426|Vega:OTTHUMG00000177664 16 16p CORO7-PAM16 readthrough protein-coding CORO7-PAM16 CORO7-PAM16 readthrough O CORO7-PAM16 protein 20121230 -9606 100529145 TEN1-CDK3 - C17orf106-CDK3 HGNC:44420 17 17q TEN1-CDK3 readthrough (non-protein coding) miscRNA TEN1-CDK3 TEN1-CDK3 readthrough (non-protein coding) O - 20121230 -9606 100529146 DER22T11-22 - - MIM:609029 22 22q11.2 Emanuel syndrome unknown - - - - 20120622 -9606 100529147 MMRFCGU - - MIM:613680 16 16p13.3 Microcephaly, mental retardation, and distinctive facies, with cardiac and genitourinary malformations unknown - - - - 20120622 -9606 100529148 MDNS - - MIM:613689 22 22q12.3-q13.1 Mammary-digital-nail syndrome unknown - - - - 20120622 -9606 100529149 DER22T8-22 - - MIM:613700 22 22q11.2 Supernumerary der(22)t(8-22) syndrome unknown - - - - 20120622 -9606 100529151 IBD11 - - MIM:191390 7 7q22 Inflammatory bowel disease 11 unknown - - - - 20120622 -9606 100529207 RAD51L3-RFFL - - - 17 17q RAD51L3-RFFL readthrough miscRNA - - - - 20121230 -9606 100529209 RNASEK-C17orf49 hCG_32827 - HGNC:44419 17 17p RNASEK-C17orf49 readthrough (non-protein coding) miscRNA RNASEK-C17orf49 RNASEK-C17orf49 readthrough (non-protein coding) O - 20121230 -9606 100529211 C17orf61-PLSCR3 - - - 17 17p C17orf61-PLSCR3 readthrough miscRNA - - - - 20121230 -9606 100529215 ZNF559-ZNF177 - - HGNC:42964|Ensembl:ENSG00000188629|Vega:OTTHUMG00000179943 19 19p ZNF559-ZNF177 readthrough protein-coding ZNF559-ZNF177 ZNF559-ZNF177 readthrough O zinc finger protein 177 20121230 -9606 100529221 DEL6Q11Q14 - C6DELq11q14 MIM:613544 6 6q11-q14 Chromosome 6q11-q14 deletion syndrome unknown - - - - 20120622 -9606 100529222 STQTL23 - - MIM:613548 1 1p32 Stature QTL 23 unknown - - - - 20120622 -9606 100529223 STQTL24 - - MIM:613549 2 2p16 Stature QTL 24 unknown - - - - 20120622 -9606 100529224 FWS - - MIM:613606 1 1p33-p31.1 Forsythe-Wakeling syndrome unknown - - - - 20120622 -9606 100529225 SMALED - - MIM:158600 - - Spinal muscular atrophy, lower extremity, autosomal dominant unknown - - - - 20121123 -9606 100529226 DUP17Q21.31 - C17DUPq21.31 MIM:613533 17 17q21.31 Chromosome 17q21.31 duplication syndrome unknown - - - - 20120622 -9606 100529227 STQTL22 - - MIM:613547 16 16q24 Stature QTL 22 unknown - - - - 20120622 -9606 100529228 TRIP4Q32.1Q32.2 - C4TRIPq32.1q32.2 MIM:613603 4 4q32.1-q32.2 Chromosome 4q32.1-q32.2 triplication syndrome unknown - - - - 20120622 -9606 100529229 FAME3 - FCMTE3 MIM:613608 5 5p15.31-p15.1 Epilepsy, familial adult myoclonic, 3 unknown - - - - 20120622 -9606 100529230 LGMD1H - - HGNC:38505|MIM:613530 3 3p25.1-p23 limb girdle muscular dystrophy 1H (autosomal dominant) unknown LGMD1H limb girdle muscular dystrophy 1H (autosomal dominant) O - 20120622 -9606 100529231 MACST - - MIM:613545 1 1p34-p32 Macrostomia unknown - - - - 20120622 -9606 100529239 RPS10-NUDT3 - - - 6 6p21 RPS10-NUDT3 readthrough protein-coding - - - RPS10-NUDT3 protein 20121230 -9606 100529240 ZNF816-ZNF321P - ZNF816-ZNF321 HGNC:38879|Ensembl:ENSG00000180257|Ensembl:ENSG00000221874|Vega:OTTHUMG00000167759 19 19q ZNF816-ZNF321P readthrough protein-coding ZNF816-ZNF321P ZNF816-ZNF321P readthrough O ZNF816-ZNF321 protein|ZNF816-ZNF321 read-through transcript|ZNF816-ZNF321 readthrough 20121230 -9606 100529241 HSPE1-MOB4 - HSPE1-PHOCN - 2 2q33 HSPE1-MOB4 readthrough protein-coding - - - HSPE1-MOB4 protein 20121230 -9606 100529242 DEL1Q41Q42 - C1DELq41q42 MIM:612530 1 1q41-q42 Chromosome 1q41-q42 deletion syndrome unknown - - - - 20120622 -9606 100529243 DEL2P12P11.2 - C2DELp12p11.2 MIM:613564 2 2p12-p11.2 Chromosome 2p12-p11.2 deletion syndrome unknown - - - - 20120622 -9606 100529251 CKLF-CMTM1 - - HGNC:39977|Ensembl:ENSG00000254788|Vega:OTTHUMG00000167106 16 16q21 CKLF-CMTM1 readthrough protein-coding CKLF-CMTM1 CKLF-CMTM1 readthrough O CKLF-CMTM1 protein 20121230 -9606 100529257 SYNJ2BP-COX16 - - - 14 14q24 SYNJ2BP-COX16 readthrough protein-coding - - - SYNJ2BP-COX16 protein 20121230 -9606 100529261 CHURC1-FNTB - - HGNC:42960|Ensembl:ENSG00000125954|Vega:OTTHUMG00000170219 14 14q23 CHURC1-FNTB readthrough protein-coding CHURC1-FNTB CHURC1-FNTB readthrough O CHURC1-FNTB protein 20121230 -9606 100529262 MIA-RAB4B - - - 19 19q MIA-RAB4B readthrough miscRNA - - - - 20121230 -9606 100529264 RAB4B-EGLN2 - RERT-lncRNA HGNC:44465 19 19q RAB4B-EGLN2 readthrough (non-protein coding) miscRNA RAB4B-EGLN2 RAB4B-EGLN2 readthrough (non-protein coding) O - 20121230 -9606 100529855 ZNF625-ZNF20 - - - 19 19p ZNF625-ZNF20 readthrough miscRNA - - - - 20121230 -9606 100532724 NPHP3-ACAD11 - - - 3 3q NPHP3-ACAD11 readthrough miscRNA - - - - 20121230 -9606 100532726 NDUFC2-KCTD14 - - HGNC:42956|Ensembl:ENSG00000259112|Vega:OTTHUMG00000171802 11 11q14.1 NDUFC2-KCTD14 readthrough protein-coding NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough O NDUFC2-KCTD14 protein 20121230 -9606 100532727 DDX11L12 - - - 19 - DEAD/H box polypeptide 11 like 12 protein-coding - - - - 20120508 -9606 100532731 COMMD3-BMI1 - - - 10 - COMMD3-BMI1 readthrough protein-coding - - - COMMD3-BMI1 read-through protein 20121230 -9606 100532732 MSH5-SAPCD1 - MSH5-C6orf26 HGNC:41994|Ensembl:ENSG00000255152|Vega:OTTHUMG00000031139 6 6p MSH5-SAPCD1 readthrough (non-protein coding) miscRNA MSH5-SAPCD1 MSH5-SAPCD1 readthrough (non-protein coding) O - 20121230 -9606 100532735 INO80B-WBP1 - - - 2 - INO80B-WBP1 readthrough miscRNA - - - - 20121230 -9606 100532736 C1orf151-NBL1 - - - 1 1p36.13 C1orf151-NBL1 readthrough protein-coding - - - C1orf151-NBL1 read-through protein 20121230 -9606 100532737 ATP6V1G2-DDX39B - - HGNC:41999|Ensembl:ENSG00000254870|Vega:OTTHUMG00000031200 6 6p ATP6V1G2-DDX39B readthrough (non-protein coding) miscRNA ATP6V1G2-DDX39B ATP6V1G2-DDX39B readthrough (non-protein coding) O - 20121230 -9606 100532738 DEL1P32P31 - C1DELp32p31 MIM:613735 1 1p32-p31 Chromosome 1p32-p31 deletion syndrome unknown - - - - 20120622 -9606 100532742 PIR-FIGF - - - X Xp22 PIR-FIGF readthrough miscRNA - - - - 20121230 -9606 100532746 PPT2-EGFL8 - - Ensembl:ENSG00000258388|Vega:OTTHUMG00000171245 6 6p PPT2-EGFL8 readthrough miscRNA - - - - 20121230 -9606 100532749 LOC100532749 - - - 3 3q13 ubiquitination factor E4A (UFD2 homolog, yeast) pseudogene pseudo - - - - 20121230 -9606 100533105 C8orf44-SGK3 - - Ensembl:ENSG00000104205|Vega:OTTHUMG00000164561 8 - C8orf44-SGK3 readthrough protein-coding - - - cytokine-independent survival kinase|serine/threonine-protein kinase Sgk3|serum/glucocorticoid-regulated kinase 3 20121230 -9606 100533106 ZHX1-C8ORF76 - - HGNC:42975|Ensembl:ENSG00000259305|Vega:OTTHUMG00000165087 8 8q ZHX1-C8ORF76 readthrough protein-coding ZHX1-C8ORF76 ZHX1-C8ORF76 readthrough O ZHX1-C8orf76 readthrough transcript protein|zinc fingers and homeoboxes protein 1 20121230 -9606 100533107 RTEL1-TNFRSF6B - - HGNC:44095|Ensembl:ENSG00000026036|Vega:OTTHUMG00000170363 20 20q13.33 RTEL1-TNFRSF6B readthrough (non-protein coding) miscRNA RTEL1-TNFRSF6B RTEL1-TNFRSF6B readthrough (non-protein coding) O - 20121230 -9606 100533111 ZNF670-ZNF695 - - - 1 1q ZNF670-ZNF695 readthrough miscRNA - - - - 20121230 -9606 100533177 KRTAP29-1 - KAP29.2 HGNC:34211 17 17q21.2 keratin associated protein 29-1 protein-coding KRTAP29-1 keratin associated protein 29-1 O Keratin-associated protein 29.2|keratin-associated protein 29-1 20121128 -9606 100533178 CYorf17 - - HGNC:38732|Ensembl:ENSG00000183146|Vega:OTTHUMG00000042036 Y Yq11.223 chromosome Y open reading frame 17 protein-coding CYorf17 chromosome Y open reading frame 17 O Putative uncharacterized protein CYorf17|putative uncharacterized protein CYorf17 20121230 -9606 100533179 UBE2F-SCLY - - - 2 - UBE2F-SCLY readthrough miscRNA - - - - 20121230 -9606 100533181 FXYD6-FXYD2 - - HGNC:39978|Ensembl:ENSG00000255245|Vega:OTTHUMG00000166496 11 11q23 FXYD6-FXYD2 readthrough protein-coding FXYD6-FXYD2 FXYD6-FXYD2 readthrough O FXYD6-FXYD2 read-through protein 20121230 -9606 100533182 SEC24B-AS1 - 1/2-SBSRNA4 HGNC:44003 4 4q25 SEC24B antisense RNA 1 miscRNA SEC24B-AS1 SEC24B antisense RNA 1 O - 20121230 -9606 100533183 ZNF664-FAM101A - - Ensembl:ENSG00000255906|Vega:OTTHUMG00000168597 12 12q24.31 protein FAM101A protein-coding - - - ZNF664-FAM101A readthrough 20121230 -9606 100533184 ARHGAP19-SLIT1 - - - 10 10q ARHGAP19-SLIT1 readthrough miscRNA - - - - 20121230 -9606 100533195 FAM24B-CUZD1 UNQ224 - - 10 10q FAM24B-CUZD1 readthrough miscRNA - - - - 20121230 -9606 100533464 PRH1-PRR4 - PRH1 - 12 12p PRH1-PRR4 readthrough miscRNA - - - - 20121230 -9606 100533467 BIVM-ERCC5 - - - 13 13q BIVM-ERCC5 readthrough protein-coding - - - BIVM-ERCC5 protein 20121230 -9606 100533483 DYX1C1-CCPG1 - - HGNC:43019 15 15q DYX1C1-CCPG1 readthrough (non-protein coding) miscRNA DYX1C1-CCPG1 DYX1C1-CCPG1 readthrough (non-protein coding) O - 20121230 -9606 100533496 TVP23C-CDRT4 - FAM18B2-CDRT4 HGNC:42961|Ensembl:ENSG00000259024|Vega:OTTHUMG00000165004 17 17p TVP23C-CDRT4 readthrough protein-coding TVP23C-CDRT4 TVP23C-CDRT4 readthrough O FAM18B2-CDRT4 readthrough|uncharacterized protein LOC100533496 20121230 -9606 100533618 LOC100533618 - - - X - ubinuclein 1 pseudogene pseudo - - - - 20121230 -9606 100533619 LOC100533619 - - - 16 - thymopoietin pseudogene pseudo - - - - 20121230 -9606 100533620 LOC100533620 - - - 8 - tubulin, beta pseudogene pseudo - - - - 20121230 -9606 100533621 LOC100533621 - - - 3 - fibrosin-like 1 pseudogene pseudo - - - - 20121230 -9606 100533622 LOC100533622 - - - 8 - sulfite oxidase pseudogene pseudo - - - - 20121230 -9606 100533624 LOC100533624 - - - 19 - sorting nexin 33 pseudogene pseudo - - - - 20121230 -9606 100533625 LOC100533625 - - - 19 - sorting nexin 18 pseudogene pseudo - - - - 20121230 -9606 100533626 LOC100533626 - - - 1 - tubulin, alpha 1c pseudogene pseudo - - - - 20121230 -9606 100533627 LOC100533627 - - - 1 - tubulin, alpha 1c pseudogene pseudo - - - - 20121230 -9606 100533628 LOC100533628 - - - 14 - WD repeat domain 75 pseudogene pseudo - - - - 20121230 -9606 100533629 LOC100533629 - - - 5 - FAST kinase domains 1 pseudogene pseudo - - - - 20121230 -9606 100533630 LOC100533630 - - - 4 - chimerin 1 pseudogene pseudo - - - - 20121230 -9606 100533631 LOC100533631 - - - 7 - 5-azacytidine induced 2 pseudogene pseudo - - - - 20121230 -9606 100533632 LOC100533632 - - - 7 - zinc finger protein 736 pseudogene pseudo - - - - 20121230 -9606 100533633 LOC100533633 - - - 7 - zinc finger protein 257 pseudogene pseudo - - - - 20121230 -9606 100533634 LOC100533634 - - - 7 - zinc finger protein 737 pseudogene pseudo - - - - 20121230 -9606 100533635 LOC100533635 - - - 7 - zinc finger protein 384 pseudogene pseudo - - - - 20121230 -9606 100533636 LOC100533636 - - - X - zinc finger protein 519 pseudogene pseudo - - - - 20121230 -9606 100533637 LOC100533637 - - - 22 - zinc finger protein 83 pseudogene pseudo - - - - 20121230 -9606 100533638 LOC100533638 - - - 19 - zinc finger protein 85 pseudogene pseudo - - - - 20121230 -9606 100533640 LOC100533640 - - - 17 - WEE1 homolog (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100533641 LOC100533641 - - - 12 - zinc finger protein 100 pseudogene pseudo - - - - 20121230 -9606 100533642 FNBP1P1 - - HGNC:44528 2 - formin binding protein 1 pseudogene 1 pseudo FNBP1P1 formin binding protein 1 pseudogene 1 O - 20121230 -9606 100533643 LOC100533643 - - - 11 - zinc finger protein 91 pseudogene pseudo - - - - 20121230 -9606 100533644 LOC100533644 - - - 11 - zinc finger protein 628 pseudogene pseudo - - - - 20121230 -9606 100533646 LOC100533646 - - - 20 - zinc finger protein 135 pseudogene pseudo - - - - 20121230 -9606 100533648 LOC100533648 - - - 7 - uncharacterized LOC100533648 pseudo - - - - 20121230 -9606 100533649 LOC100533649 - - - 7 - uncharacterized LOC100533649 pseudo - - - - 20121230 -9606 100533650 LOC100533650 - - - 7 - uncharacterized LOC100533650 pseudo - - - - 20121230 -9606 100533651 LOC100533651 - - - 7 - uncharacterized LOC100533651 pseudo - - - - 20121230 -9606 100533652 LOC100533652 - - - 7 - uncharacterized LOC100533652 pseudo - - - - 20121230 -9606 100533653 LOC100533653 - - - 17 - fermitin family member 3 pseudogene pseudo - - - - 20121230 -9606 100533654 LOC100533654 - - - 12 - SDA1 domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100533655 LOC100533655 - - - 6 - aryl hydrocarbon receptor pseudogene pseudo - - - - 20121230 -9606 100533658 HSPA8P17 - - HGNC:44932 9 - heat shock 70kDa protein 8 pseudogene 17 pseudo HSPA8P17 heat shock 70kDa protein 8 pseudogene 17 O - 20121230 -9606 100533659 LOC100533659 - - - 12 - ERO1-like (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100533660 EI24P5 - - HGNC:44590 8 - etoposide induced 2.4 pseudogene 5 pseudo EI24P5 etoposide induced 2.4 pseudogene 5 O - 20121230 -9606 100533661 LOC100533661 - - - 7 - shugoshin-like 1 (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100533662 LOC100533662 - - - 18 - serine/threonine kinase 25 pseudogene pseudo - - - - 20121230 -9606 100533663 LOC100533663 - - - 3 - histidine-rich glycoprotein pseudogene pseudo - - - - 20121230 -9606 100533664 PTCHD3P2 - - HGNC:44946 2 - patched domain containing 3 pseudogene 2 pseudo PTCHD3P2 patched domain containing 3 pseudogene 2 O - 20121230 -9606 100533665 PTCHD3P3 - - HGNC:44947 6 - patched domain containing 3 pseudogene 3 pseudo PTCHD3P3 patched domain containing 3 pseudogene 3 O - 20121230 -9606 100533666 LOC100533666 - - - 1 - shugoshin-like 1 (S. pombe) pseudogene pseudo - - - - 20121230 -9606 100533667 LOC100533667 - - - 5 - T, brachyury homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100533668 LOC100533668 - - - 2 - Kruppel-like factor 2 (lung) pseudogene pseudo - - - - 20121230 -9606 100533669 LOC100533669 - - - X - melanoma antigen family A, 10 pseudogene pseudo - - - - 20121230 -9606 100533670 LOC100533670 - - - 4 - tripartite motif containing 60 pseudogene pseudo - - - - 20121230 -9606 100533671 ADAM20P2 - - HGNC:43901 4 - ADAM metallopeptidase domain 20 pseudogene 2 pseudo ADAM20P2 ADAM metallopeptidase domain 20 pseudogene 2 O - 20121230 -9606 100533672 TRIM60P19 - - HGNC:42010 13 - tripartite motif containing 60 pseudogene 19 pseudo TRIM60P19 tripartite motif containing 60 pseudogene 19 O - 20121230 -9606 100533673 LOC100533673 - - - 7 - oxysterol binding protein-like 9 pseudogene pseudo - - - - 20121230 -9606 100533674 LOC100533674 - - - 9 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100533675 LOC100533675 - - - 9 - nuclear pore associated protein 1 pseudogene pseudo - - - - 20121230 -9606 100533676 LOC100533676 - - - 10 - phosphatase and actin regulator 2 pseudogene pseudo - - - - 20121230 -9606 100533677 LOC100533677 - - - 5 - coiled-coil domain containing 176 pseudogene pseudo - - - - 20121230 -9606 100533678 LOC100533678 - - - 2 - serine/arginine repetitive matrix 1 pseudogene pseudo - - - - 20121230 -9606 100533679 LOC100533679 - - - 22 - URI1, prefoldin-like chaperone pseudogene pseudo - - - - 20121230 -9606 100533682 MIPEPP1 - - HGNC:39456 7 - mitochondrial intermediate peptidase pseudogene 1 pseudo MIPEPP1 mitochondrial intermediate peptidase pseudogene 1 O - 20121230 -9606 100533695 RLIMP1 - - HGNC:39682 13 - ring finger protein, LIM domain interacting pseudogene 1 pseudo RLIMP1 ring finger protein, LIM domain interacting pseudogene 1 O - 20121230 -9606 100533705 SLC9B1P5 - - HGNC:43584 16 - solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 5 pseudo SLC9B1P5 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 5 O - 20121230 -9606 100533706 LOC100533706 - - - 11 - NEDD8 activating enzyme E1 subunit 1 pseudogene pseudo - - - - 20121230 -9606 100533707 LOC100533707 - - - 9 - ZFP37 zinc finger protein pseudogene pseudo - - - - 20121230 -9606 100533708 LOC100533708 - - - 4 - protein inhibitor of activated STAT, 2 pseudogene pseudo - - - - 20121230 -9606 100533709 LOC100533709 - - - 2 - piggyBac transposable element derived 2 pseudogene pseudo - - - - 20121230 -9606 100533710 LOC100533710 - - - 11 - mannosidase, alpha, class 1B, member 1 pseudogene pseudo - - - - 20121230 -9606 100533711 LOC100533711 - - - 20 - cytoskeleton associated protein 2-like pseudogene pseudo - - - - 20121230 -9606 100533712 LOC100533712 - - - X - Mdm4 p53 binding protein homolog (mouse) pseudogene pseudo - - - - 20121230 -9606 100533713 ELL2P3 - - HGNC:39345 13 - elongation factor, RNA polymerase II, 2 pseudogene 3 pseudo ELL2P3 elongation factor, RNA polymerase II, 2 pseudogene 3 O - 20121230 -9606 100533714 LOC100533714 - - - 7 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 pseudogene pseudo - - - - 20121230 -9606 100533716 LOC100533716 - - - X - DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 pseudogene pseudo - - - - 20121230 -9606 100533717 LOC100533717 - - - 15 - breast cancer anti-estrogen resistance 1 pseudogene pseudo - - - - 20121230 -9606 100533718 LOC100533718 - - - 15 - breast cancer anti-estrogen resistance 1 pseudogene pseudo - - - - 20121209 -9606 100533719 ANKRD20A14P - - HGNC:43605 1 - ankyrin repeat domain 20 family, member A14, pseudogene pseudo ANKRD20A14P ankyrin repeat domain 20 family, member A14, pseudogene O - 20121230 -9606 100533720 ANKRD20A15P - - HGNC:43606 1 - ankyrin repeat domain 20 family, member A15, pseudogene pseudo ANKRD20A15P ankyrin repeat domain 20 family, member A15, pseudogene O - 20121209 -9606 100533721 PNPT1P2 - - HGNC:44469 7 - polyribonucleotide nucleotidyltransferase 1 pseudogene 2 pseudo PNPT1P2 polyribonucleotide nucleotidyltransferase 1 pseudogene 2 O - 20121230 -9606 100533722 LOC100533722 - - - 7 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533723 LOC100533723 - - - Y - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533725 LOC100533725 - - - 9 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533727 LOC100533727 - - - 2 - replication factor C (activator 1) 2, 40kDa pseudogene pseudo - - - - 20121230 -9606 100533728 LOC100533728 - - - X - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533729 LOC100533729 - - - X - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533730 LOC100533730 - - - X - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533731 RLIMP2 - - HGNC:39683 1 - ring finger protein, LIM domain interacting pseudogene 2 pseudo RLIMP2 ring finger protein, LIM domain interacting pseudogene 2 O - 20121230 -9606 100533732 LOC100533732 - - - 1 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533733 LOC100533733 - - - 4 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533734 LOC100533734 - - - 4 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533735 LOC100533735 - - - 4 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533736 LOC100533736 - - - 4 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533754 LOC100533754 - - - 3 - MAP/microtubule affinity-regulating kinase 3 pseudogene pseudo - - - - 20121230 -9606 100533755 LOC100533755 - - - 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene pseudo - - - - 20121230 -9606 100533757 LOC100533757 - - - 12 - Sjogren syndrome antigen B (autoantigen La) pseudogene pseudo - - - - 20121230 -9606 100533787 LOC100533787 - - - 14 - HERV-FRD provirus ancestral Env polyprotein pseudogene pseudo - - - - 20121230 -9606 100533789 LRRC37A8P - - HGNC:43793 17 - leucine rich repeat containing 37, member A8, pseudogene pseudo LRRC37A8P leucine rich repeat containing 37, member A8, pseudogene O - 20121230 -9606 100533790 LRRC37A9P - - HGNC:43813 17 - leucine rich repeat containing 37, member A9, pseudogene pseudo LRRC37A9P leucine rich repeat containing 37, member A9, pseudogene O - 20121230 -9606 100533791 LRRC37A10P - - HGNC:43814 17 - leucine rich repeat containing 37, member A10, pseudogene pseudo LRRC37A10P leucine rich repeat containing 37, member A10, pseudogene O - 20121230 -9606 100533794 LOC100533794 - - - 10 - MAP/microtubule affinity-regulating kinase 2 pseudogene pseudo - - - - 20121230 -9606 100533795 LOC100533795 - - - 10 - MAP/microtubule affinity-regulating kinase 2 pseudogene pseudo - - - - 20121230 -9606 100533800 BMPR1APS2 - - HGNC:21743 11 11q24.1 bone morphogenetic protein receptor, type IA pseudogene 2 pseudo BMPR1APS2 bone morphogenetic protein receptor, type IA pseudogene 2 O - 20121230 -9606 100533814 LOC100533814 - - - 7 - family with sequence similarity 115, member C pseudogene pseudo - - - - 20121230 -9606 100533842 LOC100533842 - - - 2 - ATP-binding cassette, sub-family G (WHITE), member 2 pseudogene pseudo - - - - 20121230 -9606 100533843 LOC100533843 - - - X - karyopherin alpha 2 (RAG cohort 1, importin alpha 1) pseudogene pseudo - - - - 20121230 -9606 100533844 TARS2P1 - - HGNC:43712 4 - threonyl-tRNA synthetase 2, mitochondrial pseudogene pseudo TARS2P1 threonyl-tRNA synthetase 2, mitochondrial pseudogene O - 20121230 -9606 100533845 LOC100533845 - - - 4 - UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene pseudo - - - - 20121230 -9606 100533846 LOC100533846 - - - 19 - solute carrier family 30 (zinc transporter), member 5 pseudogene pseudo - - - - 20121230 -9606 100533847 TYW1P1 - - HGNC:41905 2 - tRNA-yW synthesizing protein 1 homolog pseudogene 1 pseudo TYW1P1 tRNA-yW synthesizing protein 1 homolog pseudogene 1 O - 20121230 -9606 100533848 LOC100533848 - - - 2 - ATPase, H+/K+ transporting, nongastric, alpha polypeptide pseudogene pseudo - - - - 20121230 -9606 100533849 LOC100533849 - - - 10 - mitogen-activated protein kinase-activated protein kinase 5 pseudogene pseudo - - - - 20121230 -9606 100533850 LOC100533850 - - - 15 - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20121230 -9606 100533851 ATP8A2P2 - - HGNC:39663 13 - ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 2 pseudo ATP8A2P2 ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 2 O - 20121230 -9606 100533852 LOC100533852 - - - 18 - nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) pseudogene pseudo - - - - 20121230 -9606 100533853 LOC100533853 - - - 15 - protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene pseudo - - - - 20121230 -9606 100533884 LOC100533884 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100533885 LOC100533885 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100533886 LOC100533886 - - - - - tenascin XB pseudogene pseudo - - - - 20120318 -9606 100533887 LOC100533887 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100533888 LOC100533888 - - - - - tenascin XB pseudogene pseudo - - - - 20120318 -9606 100533889 LOC100533889 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100533890 LOC100533890 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100533891 LOC100533891 - - - - - tenascin XB pseudogene pseudo - - - - 20120318 -9606 100533892 LOC100533892 - - - - - ubiquilin 1 pseudogene pseudo - - - - 20120318 -9606 100533893 LOC100533893 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100533894 LOC100533894 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100533895 LOC100533895 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100533896 LOC100533896 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100533897 LOC100533897 - - - - - thymopoietin pseudogene pseudo - - - - 20120318 -9606 100533898 LOC100533898 - - - - - fibrosin-like 1 pseudogene pseudo - - - - 20120318 -9606 100533899 LOC100533899 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100533900 LOC100533900 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100533901 LOC100533901 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100533902 LOC100533902 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100533903 LOC100533903 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100533904 LOC100533904 - - - - - ribosomal protein L3 pseudogene pseudo - - - - 20120318 -9606 100533905 LOC100533905 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100533906 LOC100533906 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100533907 LOC100533907 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100533908 LOC100533908 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100533909 LOC100533909 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100533910 LOC100533910 - - - - - WAS protein family, member 3 pseudogene pseudo - - - - 20120318 -9606 100533911 LOC100533911 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100533912 LOC100533912 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100533913 LOC100533913 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100533914 LOC100533914 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100533915 LOC100533915 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100533916 LOC100533916 - - - - - ubiquitin specific peptidase 8 pseudogene pseudo - - - - 20120318 -9606 100533917 LOC100533917 - - - - - N-ethylmaleimide-sensitive factor pseudogene pseudo - - - - 20120318 -9606 100533918 LOC100533918 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100533919 LOC100533919 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100533920 LOC100533920 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100533921 LOC100533921 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100533922 LOC100533922 - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene pseudo - - - - 20120318 -9606 100533923 LOC100533923 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100533924 LOC100533924 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100533925 LOC100533925 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100533926 LOC100533926 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100533927 LOC100533927 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100533928 LOC100533928 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100533929 LOC100533929 - - - - - eukaryotic translation termination factor 1 pseudogene pseudo - - - - 20120318 -9606 100533930 LOC100533930 - - - - - family with sequence similarity 8, member A1 pseudogene pseudo - - - - 20120318 -9606 100533931 LOC100533931 - - - - - family with sequence similarity 8, member A1 pseudogene pseudo - - - - 20120318 -9606 100533932 LOC100533932 - - - - - family with sequence similarity 8, member A1 pseudogene pseudo - - - - 20120318 -9606 100533933 LOC100533933 - - - - - leucine rich repeat containing 37A pseudogene pseudo - - - - 20121024 -9606 100533934 LOC100533934 - - - - - leucine rich repeat containing 37A pseudogene pseudo - - - - 20121024 -9606 100533935 LOC100533935 - - - - - leucine rich repeat containing 37, member A2 pseudogene pseudo - - - - 20120602 -9606 100533936 LOC100533936 - - - - - major histocompatibility complex, class I, B pseudogene pseudo - - - - 20120318 -9606 100533937 LOC100533937 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533938 LOC100533938 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533939 LOC100533939 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533940 LOC100533940 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533941 LOC100533941 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533942 LOC100533942 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533943 LOC100533943 - - - - - poly(A) binding protein interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533944 LOC100533944 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100533945 LOC100533945 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100533946 LOC100533946 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100533947 LOC100533947 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100533948 LOC100533948 - - - - - succinate-CoA ligase, ADP-forming, beta subunit pseudogene pseudo - - - - 20120318 -9606 100533949 LOC100533949 - - - - - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533950 LOC100533950 - - - - - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533951 LOC100533951 - - - - - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo - - - - 20120318 -9606 100533952 RBAK-LOC389458 - - Ensembl:ENSG00000146587|Vega:OTTHUMG00000121155 7 - RBAK-LOC389458 readthrough protein-coding - - - uncharacterized protein LOC100533952 20121230 -9606 100533955 SENP3-EIF4A1 - - - 17 17p SENP3-EIF4A1 readthrough miscRNA - - - - 20121230 -9606 100533970 P2RX5-TAX1BP3 - - - 17 17p P2RX5-TAX1BP3 readthrough miscRNA - - - - 20121230 -9606 100533975 SLMO2-ATP5E - - - 20 - SLMO2-ATP5E readthrough miscRNA - - - - 20121230 -9606 100533990 APOC4-APOC2 - - - 19 19q APOC4-APOC2 readthrough miscRNA - - - - 20121230 -9606 100533997 MAGEA10-MAGEA5 - CT1.5 - X Xq28 MAGEA10-MAGEA5 readthrough protein-coding - - - MAGE-5 antigen|cancer/testis antigen 1.5|melanoma-associated antigen 5 20121230 -9606 100534012 TNFAIP8L2-SCNM1 - - - 1 1q21.3 TNFAIP8L2-SCNM1 readthrough protein-coding - - - TNFAIP8L2-SCNM1 protein 20121230 -9606 100534589 HOXA10-HOXA9 - - - 7 7p15.2 HOXA10-HOXA9 readthrough miscRNA - - - - 20121230 -9606 100534592 URGCP-MRPS24 - - - 7 7p13 URGCP-MRPS24 readthrough protein-coding - - - uncharacterized protein LOC100534592 20121230 -9606 100534593 STX16-NPEPL1 - - HGNC:41993|Ensembl:ENSG00000254995|Vega:OTTHUMG00000167390 20 20q STX16-NPEPL1 readthrough (non-protein coding) miscRNA STX16-NPEPL1 STX16-NPEPL1 readthrough (non-protein coding) O - 20121230 -9606 100534595 HNRNPUL2-BSCL2 - - - 11 - HNRNPUL2-BSCL2 readthrough miscRNA - - - - 20121230 -9606 100534599 ISY1-RAB43 - - HGNC:42969|Ensembl:ENSG00000240682|Ensembl:ENSG00000261796|Vega:OTTHUMG00000137365|Vega:OTTHUMG00000177122 3 3q ISY1-RAB43 readthrough protein-coding ISY1-RAB43 ISY1-RAB43 readthrough O ISY1-RAB43 protein 20121230 -9606 100534611 TM4SF19-TCTEX1D2 - - - 3 3q TM4SF19-TCTEX1D2 readthrough miscRNA - - - - 20121230 -9606 100534612 C1QTNF3-AMACR - - - 5 5p C1QTNF3-AMACR readthrough miscRNA - - - - 20121230 -9606 100534624 LCR-OPSIN - - MIM:300824 X - opsin locus control region other - - - - 20120815 -9606 100551499 LINC00159 - C21orf44|NCRNA00159 HGNC:1285 21 21q22.11 long intergenic non-protein coding RNA 159 miscRNA LINC00159 long intergenic non-protein coding RNA 159 O - 20121230 -9606 100568447 IGHV3OR16-14 - IGHV3OR1614 HGNC:5638|IMGT/GENE-DB:IGHV3/OR16-14 16 16p11.2 immunoglobulin heavy variable 3/OR16-14 (pseudogene) pseudo IGHV3OR16-14 immunoglobulin heavy variable 3/OR16-14 (pseudogene) O - 20120318 -9606 100616100 ERVK-2 - c3_A HGNC:39001 3 3p25.3 endogenous retrovirus group K, member 2 unknown ERVK-2 endogenous retrovirus group K, member 2 O - 20120726 -9606 100616101 ERVK-10 - PR|Protease|Proteinase HGNC:39004 5 5q33.3 endogenous retrovirus group K, member 10 unknown ERVK-10 endogenous retrovirus group K, member 10 O - 20121211 -9606 100616102 ERVK-9 - polymerase HGNC:39005 6 6q14.1 endogenous retrovirus group K, member 9 unknown ERVK-9 endogenous retrovirus group K, member 9 O - 20120726 -9606 100616103 ERVK-21 - Endo-Rev2|c12_A|envK1 HGNC:39035 12 12q14.1 endogenous retrovirus group K, member 21 unknown ERVK-21 endogenous retrovirus group K, member 21 O - 20121017 -9606 100616104 ERVFH21-1 - - HGNC:39047 7 7p21.3 endogenous retrovirus group FH21, member 1 unknown ERVFH21-1 endogenous retrovirus group FH21, member 1 O - 20121017 -9606 100616105 ERVE-4 - CT-RCC-1 HGNC:39050 6 6q15 endogenous retrovirus group E, member 4 unknown ERVE-4 endogenous retrovirus group E, member 4 O - 20121017 -9606 100616106 ERVK3-4 - HML6-c11 HGNC:39109 11 11p15.4 endogenous retrovirus group K3, member 4 unknown ERVK3-4 endogenous retrovirus group K3, member 4 O - 20121017 -9606 100616107 ERVK3-6 - HML6-c19A HGNC:39111 19 19q13.41 endogenous retrovirus group K3, member 6 unknown ERVK3-6 endogenous retrovirus group K3, member 6 O - 20121017 -9606 100616108 ERVK3-8 - - HGNC:39113 20 20p11.21 endogenous retrovirus group K3, member 8 unknown ERVK3-8 endogenous retrovirus group K3, member 8 O - 20121017 -9606 100616109 MIR4464 - - HGNC:41528|miRBase:MI0016812 6 - microRNA 4464 miscRNA MIR4464 microRNA 4464 O - 20121230 -9606 100616110 MIR2681 - - HGNC:41532|miRBase:MI0012062 13 - microRNA 2681 miscRNA MIR2681 microRNA 2681 O - 20121230 -9606 100616111 MIR4455 - - HGNC:41536|miRBase:MI0016801 4 - microRNA 4455 miscRNA MIR4455 microRNA 4455 O - 20121230 -9606 100616112 MIR4793 - - HGNC:41538|miRBase:MI0017440 3 - microRNA 4793 miscRNA MIR4793 microRNA 4793 O - 20121230 -9606 100616113 MIR4680 - - HGNC:41541|miRBase:MI0017312 10 - microRNA 4680 miscRNA MIR4680 microRNA 4680 O - 20121230 -9606 100616114 MIR4668 - - HGNC:41545|miRBase:MI0017298 9 - microRNA 4668 miscRNA MIR4668 microRNA 4668 O - 20121230 -9606 100616115 MIR4469 - - HGNC:41556|miRBase:MI0016820 8 - microRNA 4469 miscRNA MIR4469 microRNA 4469 O - 20121230 -9606 100616116 MIR4648 - - HGNC:41560|miRBase:MI0017275 7 - microRNA 4648 miscRNA MIR4648 microRNA 4648 O - 20121230 -9606 100616117 MIR4653 - - HGNC:41562|miRBase:MI0017281 7 - microRNA 4653 miscRNA MIR4653 microRNA 4653 O - 20121230 -9606 100616118 MIR4486 - - HGNC:41566|miRBase:MI0016847 11 - microRNA 4486 miscRNA MIR4486 microRNA 4486 O - 20121230 -9606 100616119 MIR4697 - - HGNC:41570|miRBase:MI0017330 11 - microRNA 4697 miscRNA MIR4697 microRNA 4697 O - 20121230 -9606 100616120 MIR4695 - - HGNC:41573|miRBase:MI0017328 1 - microRNA 4695 miscRNA MIR4695 microRNA 4695 O - 20121230 -9606 100616121 MIR1268B - - HGNC:41581|miRBase:MI0016748 17 - microRNA 1268b miscRNA MIR1268B microRNA 1268b O - 20121230 -9606 100616122 MIR4523 - - HGNC:41583|miRBase:MI0016890 17 - microRNA 4523 miscRNA MIR4523 microRNA 4523 O - 20121209 -9606 100616123 MIR4436B1 - MIR4436B|hsa-mir-4436b-1 HGNC:41587|miRBase:MI0017425 2 - microRNA 4436b-1 miscRNA MIR4436B1 microRNA 4436b-1 O - 20121230 -9606 100616124 MIR4647 - - HGNC:41594|miRBase:MI0017274 6 - microRNA 4647 miscRNA MIR4647 microRNA 4647 O - 20121230 -9606 100616125 MIR4731 - - HGNC:41597|miRBase:MI0017368 17 - microRNA 4731 miscRNA MIR4731 microRNA 4731 O - 20121230 -9606 100616126 MIR4686 - - HGNC:41601|miRBase:MI0017318 11 - microRNA 4686 miscRNA MIR4686 microRNA 4686 O - 20121230 -9606 100616127 MIR4448 - - HGNC:41604|miRBase:MI0016791 3 - microRNA 4448 miscRNA MIR4448 microRNA 4448 O - 20121230 -9606 100616128 MIR4679-1 - - HGNC:41612|miRBase:MI0017310 10 - microRNA 4679-1 miscRNA MIR4679-1 microRNA 4679-1 O - 20121230 -9606 100616129 MIR4445 - - HGNC:41614|miRBase:MI0016788 3 - microRNA 4445 miscRNA MIR4445 microRNA 4445 O - 20121230 -9606 100616130 MIR4526 - - HGNC:41618|miRBase:MI0016893 18 - microRNA 4526 miscRNA MIR4526 microRNA 4526 O - 20121230 -9606 100616131 MIR3689D1 - - HGNC:41621|miRBase:MI0016834 9 - microRNA 3689d-1 miscRNA MIR3689D1 microRNA 3689d-1 O - 20121230 -9606 100616132 MIR4728 - - HGNC:41632|miRBase:MI0017365 17 - microRNA 4728 miscRNA MIR4728 microRNA 4728 O - 20121230 -9606 100616133 MIR4699 - - HGNC:41636|miRBase:MI0017332 12 - microRNA 4699 miscRNA MIR4699 microRNA 4699 O - 20121230 -9606 100616134 MIR499B - MIR499A|hsa-mir-499b HGNC:41640|miRBase:MI0017396 20 - microRNA 499b miscRNA MIR499B microRNA 499b O - 20121230 -9606 100616135 MIR4507 - - HGNC:41642|miRBase:MI0016871 14 - microRNA 4507 miscRNA MIR4507 microRNA 4507 O - 20121230 -9606 100616136 MIR4430 - - HGNC:41646|miRBase:MI0016769 2 - microRNA 4430 miscRNA MIR4430 microRNA 4430 O - 20121230 -9606 100616137 MIR4501 - - HGNC:41650|miRBase:MI0016864 13 - microRNA 4501 miscRNA MIR4501 microRNA 4501 O - 20121230 -9606 100616138 MIR4787 - - HGNC:41653|miRBase:MI0017434 3 - microRNA 4787 miscRNA MIR4787 microRNA 4787 O - 20121230 -9606 100616139 MIR4741 - - HGNC:41661|miRBase:MI0017379 18 - microRNA 4741 miscRNA MIR4741 microRNA 4741 O - 20121230 -9606 100616140 MIR4506 - - HGNC:41663|miRBase:MI0016869 14 - microRNA 4506 miscRNA MIR4506 microRNA 4506 O - 20121230 -9606 100616141 MIR4428 - - HGNC:41667|miRBase:MI0016767 1 - microRNA 4428 miscRNA MIR4428 microRNA 4428 O - 20121230 -9606 100616142 MIR4458 - - HGNC:41674|miRBase:MI0016804 5 - microRNA 4458 miscRNA MIR4458 microRNA 4458 O - 20121230 -9606 100616143 MIR4763 - - HGNC:41677|miRBase:MI0017404 22 - microRNA 4763 miscRNA MIR4763 microRNA 4763 O - 20121230 -9606 100616144 MIR548AN - - HGNC:41681|miRBase:MI0016907 X - microRNA 548an miscRNA MIR548AN microRNA 548an O - 20121230 -9606 100616145 MIR1273G - - HGNC:41684|miRBase:MI0018003 1 - microRNA 1273g miscRNA MIR1273G microRNA 1273g O - 20121230 -9606 100616146 MIR4534 - - HGNC:41692|miRBase:MI0016901 22 - microRNA 4534 miscRNA MIR4534 microRNA 4534 O - 20121230 -9606 100616147 MIR4769 - - HGNC:41694|miRBase:MI0017410 X - microRNA 4769 miscRNA MIR4769 microRNA 4769 O - 20121230 -9606 100616148 MIR4760 - - HGNC:41698|miRBase:MI0017401 21 - microRNA 4760 miscRNA MIR4760 microRNA 4760 O - 20121230 -9606 100616149 MIR4512 - - HGNC:41701|miRBase:MI0016878 15 - microRNA 4512 miscRNA MIR4512 microRNA 4512 O - 20121230 -9606 100616150 MIR4720 - - HGNC:41705|miRBase:MI0017355 16 - microRNA 4720 miscRNA MIR4720 microRNA 4720 O - 20121230 -9606 100616151 MIR4480 - - HGNC:41716|miRBase:MI0016841 10 - microRNA 4480 miscRNA MIR4480 microRNA 4480 O - 20121230 -9606 100616152 MIR4804 - - HGNC:41720|miRBase:MI0017452 5 - microRNA 4804 miscRNA MIR4804 microRNA 4804 O - 20121230 -9606 100616153 MIR4726 - - HGNC:41722|miRBase:MI0017363 17 - microRNA 4726 miscRNA MIR4726 microRNA 4726 O - 20121230 -9606 100616154 MIR4466 - - HGNC:41726|miRBase:MI0016817 6 - microRNA 4466 miscRNA MIR4466 microRNA 4466 O - 20121230 -9606 100616155 MIR4536-1 - MIR4536|hsa-mir-4536-1 HGNC:41730|miRBase:MI0016906 X - microRNA 4536-1 miscRNA MIR4536-1 microRNA 4536-1 O - 20121230 -9606 100616156 MIR1273F - - HGNC:41733|miRBase:MI0018002 1 - microRNA 1273f miscRNA MIR1273F microRNA 1273f O - 20121230 -9606 100616157 MIR4772 - - HGNC:41741|miRBase:MI0017414 2 - microRNA 4772 miscRNA MIR4772 microRNA 4772 O - 20121230 -9606 100616158 MIR4505 - - HGNC:41743|miRBase:MI0016868 14 - microRNA 4505 miscRNA MIR4505 microRNA 4505 O - 20121230 -9606 100616159 MIR4779 - - HGNC:41747|miRBase:MI0017423 2 - microRNA 4779 miscRNA MIR4779 microRNA 4779 O - 20121230 -9606 100616160 MIR4655 - - HGNC:41754|miRBase:MI0017283 7 - microRNA 4655 miscRNA MIR4655 microRNA 4655 O - 20121230 -9606 100616161 MIR4795 - - HGNC:41757|miRBase:MI0017442 3 - microRNA 4795 miscRNA MIR4795 microRNA 4795 O - 20121230 -9606 100616162 MIR4483 - - HGNC:41761|miRBase:MI0016844 10 - microRNA 4483 miscRNA MIR4483 microRNA 4483 O - 20121230 -9606 100616163 MIR4530 - - HGNC:41764|miRBase:MI0016897 19 - microRNA 4530 miscRNA MIR4530 microRNA 4530 O - 20121230 -9606 100616164 MIR4420 - - HGNC:41772|miRBase:MI0016757 1 - microRNA 4420 miscRNA MIR4420 microRNA 4420 O - 20121230 -9606 100616165 MIR4771-2 - - HGNC:41774|miRBase:MI0017413 2 - microRNA 4771-2 miscRNA MIR4771-2 microRNA 4771-2 O - 20121230 -9606 100616166 MIR4796 - - HGNC:41779|miRBase:MI0017443 3 - microRNA 4796 miscRNA MIR4796 microRNA 4796 O - 20121230 -9606 100616167 MIR4722 - - HGNC:41782|miRBase:MI0017357 16 - microRNA 4722 miscRNA MIR4722 microRNA 4722 O - 20121230 -9606 100616168 MIR4754 - - HGNC:41786|miRBase:MI0017394 19 - microRNA 4754 miscRNA MIR4754 microRNA 4754 O - 20121230 -9606 100616169 MIR378D2 - - HGNC:41797|miRBase:MI0003840 8 - microRNA 378d-2 miscRNA MIR378D2 microRNA 378d-2 O - 20121230 -9606 100616170 MIR4739 - - HGNC:41801|miRBase:MI0017377 17 - microRNA 4739 miscRNA MIR4739 microRNA 4739 O - 20121230 -9606 100616171 MIR4752 - - HGNC:41803|miRBase:MI0017391 19 - microRNA 4752 miscRNA MIR4752 microRNA 4752 O - 20121230 -9606 100616172 MIR4719 - - HGNC:41807|miRBase:MI0017354 16 - microRNA 4719 miscRNA MIR4719 microRNA 4719 O - 20121230 -9606 100616173 MIR3545 - - HGNC:41811|miRBase:MI0017343 14 - microRNA 3545 miscRNA MIR3545 microRNA 3545 O - 20121230 -9606 100616174 MIR4643 - - HGNC:41814|miRBase:MI0017270 6 - microRNA 4643 miscRNA MIR4643 microRNA 4643 O - 20121230 -9606 100616175 MIR4633 - - HGNC:41822|miRBase:MI0017260 5 - microRNA 4633 miscRNA MIR4633 microRNA 4633 O - 20121230 -9606 100616176 MIR4708 - - HGNC:41824|miRBase:MI0017341 14 - microRNA 4708 miscRNA MIR4708 microRNA 4708 O - 20121230 -9606 100616177 MIR4419A - - HGNC:41828|miRBase:MI0016755 1 - microRNA 4419a miscRNA MIR4419A microRNA 4419a O - 20121230 -9606 100616178 MIR4641 - - HGNC:41835|miRBase:MI0017268 6 - microRNA 4641 miscRNA MIR4641 microRNA 4641 O - 20121230 -9606 100616179 MIR4498 - - HGNC:41838|miRBase:MI0016860 12 - microRNA 4498 miscRNA MIR4498 microRNA 4498 O - 20121230 -9606 100616180 MIR4465 - - HGNC:41842|miRBase:MI0016816 6 - microRNA 4465 miscRNA MIR4465 microRNA 4465 O - 20121230 -9606 100616181 MIR4514 - - HGNC:41845|miRBase:MI0016880 15 - microRNA 4514 miscRNA MIR4514 microRNA 4514 O - 20121230 -9606 100616182 MIR4500 - - HGNC:41853|miRBase:MI0016863 13 13q31.2 microRNA 4500 miscRNA MIR4500 microRNA 4500 O - 20121230 -9606 100616183 MIR4513 - - HGNC:41855|miRBase:MI0016879 15 - microRNA 4513 miscRNA MIR4513 microRNA 4513 O - 20121230 -9606 100616184 MIR4477A - - HGNC:41859|miRBase:MI0016829 9 - microRNA 4477a miscRNA MIR4477A microRNA 4477a O - 20121230 -9606 100616185 MIR371B - - HGNC:41863|miRBase:MI0017393 19 - microRNA 371b miscRNA MIR371B microRNA 371b O - 20121230 -9606 100616186 MIR4490 - - HGNC:41871|miRBase:MI0016852 11 - microRNA 4490 miscRNA MIR4490 microRNA 4490 O - 20121230 -9606 100616187 MIR4783 - - HGNC:41874|miRBase:MI0017428 2 - microRNA 4783 miscRNA MIR4783 microRNA 4783 O - 20121230 -9606 100616188 MIR3972 - - HGNC:41876|miRBase:MI0016990 1 - microRNA 3972 miscRNA MIR3972 microRNA 3972 O - 20121230 -9606 100616189 MIR4421 - - HGNC:41879|miRBase:MI0016758 1 - microRNA 4421 miscRNA MIR4421 microRNA 4421 O - 20121230 -9606 100616190 MIR548O2 - - HGNC:41882|miRBase:MI0016746 20 - microRNA 548o-2 miscRNA MIR548O2 microRNA 548o-2 O - 20121230 -9606 100616191 MIR548AJ1 - - HGNC:41884|miRBase:MI0016814 6 - microRNA 548aj-1 miscRNA MIR548AJ1 microRNA 548aj-1 O - 20121230 -9606 100616192 MIR4679-2 - - HGNC:41890|miRBase:MI0017311 10 - microRNA 4679-2 miscRNA MIR4679-2 microRNA 4679-2 O - 20121230 -9606 100616193 MIR4453 - - HGNC:41892|miRBase:MI0016799 4 - microRNA 4453 miscRNA MIR4453 microRNA 4453 O - 20121230 -9606 100616194 MIR4477B - - HGNC:41898|miRBase:MI0016830 9 - microRNA 4477b miscRNA MIR4477B microRNA 4477b O - 20121230 -9606 100616195 MIR4718 - - HGNC:41900|miRBase:MI0017353 16 - microRNA 4718 miscRNA MIR4718 microRNA 4718 O - 20121230 -9606 100616196 MIR4525 - - HGNC:41903|miRBase:MI0016892 17 - microRNA 4525 miscRNA MIR4525 microRNA 4525 O - 20121230 -9606 100616197 ERVK-23 - c21_A HGNC:39037 21 21q21.1 endogenous retrovirus group K, member 23 unknown ERVK-23 endogenous retrovirus group K, member 23 O - 20121017 -9606 100616198 ERVW-6 - - HGNC:39045 11 11q14.1 endogenous retrovirus group W, member 6 unknown ERVW-6 endogenous retrovirus group W, member 6 O - 20121017 -9606 100616199 ERVK3-7 - HML6-c19B HGNC:39112 19 19p13.2 endogenous retrovirus group K3, member 7 unknown ERVK3-7 endogenous retrovirus group K3, member 7 O - 20121017 -9606 100616200 ERVS71-2 - HERV-HC2 HGNC:41526 10 10p11.1 endogenous retrovirus group S71, member 2 unknown ERVS71-2 endogenous retrovirus group S71, member 2 O - 20121017 -9606 100616201 MIR378D1 - - HGNC:41550|miRBase:MI0016749 4 - microRNA 378d-1 miscRNA MIR378D1 microRNA 378d-1 O - 20121230 -9606 100616202 MIR4634 - - HGNC:41559|miRBase:MI0017261 5 - microRNA 4634 miscRNA MIR4634 microRNA 4634 O - 20121230 -9606 100616203 MIR4734 - - HGNC:41572|miRBase:MI0017371 17 - microRNA 4734 miscRNA MIR4734 microRNA 4734 O - 20121230 -9606 100616204 MIR4729 - - HGNC:41585|miRBase:MI0017366 17 - microRNA 4729 miscRNA MIR4729 microRNA 4729 O - 20121230 -9606 100616205 MIR4704 - - HGNC:41602|miRBase:MI0017337 13 - microRNA 4704 miscRNA MIR4704 microRNA 4704 O - 20121230 -9606 100616206 MIR4652 - - HGNC:41615|miRBase:MI0017280 7 - microRNA 4652 miscRNA MIR4652 microRNA 4652 O - 20121230 -9606 100616207 MIR4439 - - HGNC:41622|miRBase:MI0016782 2 - microRNA 4439 miscRNA MIR4439 microRNA 4439 O - 20121230 -9606 100616208 MIR4782 - - HGNC:41635|miRBase:MI0017427 2 - microRNA 4782 miscRNA MIR4782 microRNA 4782 O - 20121230 -9606 100616209 MIR4461 - - HGNC:41656|miRBase:MI0016807 5 - microRNA 4461 miscRNA MIR4461 microRNA 4461 O - 20121230 -9606 100616210 MIR4737 - - HGNC:41669|miRBase:MI0017374 17 - microRNA 4737 miscRNA MIR4737 microRNA 4737 O - 20121230 -9606 100616211 MIR4709 - - HGNC:41690|miRBase:MI0017342 14 - microRNA 4709 miscRNA MIR4709 microRNA 4709 O - 20121230 -9606 100616212 MIR3689F - - HGNC:41702|miRBase:MI0016837 9 - microRNA 3689f miscRNA MIR3689F microRNA 3689f O - 20121230 -9606 100616213 MIR4437 - - HGNC:41715|miRBase:MI0016778 2 - microRNA 4437 miscRNA MIR4437 microRNA 4437 O - 20121230 -9606 100616214 MIR4667 - - HGNC:41723|miRBase:MI0017297 9 - microRNA 4667 miscRNA MIR4667 microRNA 4667 O - 20121230 -9606 100616215 MIR548AL - - HGNC:41736|miRBase:MI0016851 11 - microRNA 548al miscRNA MIR548AL microRNA 548al O - 20121230 -9606 100616216 MIR4797 - - HGNC:41758|miRBase:MI0017444 3 - microRNA 4797 miscRNA MIR4797 microRNA 4797 O - 20121230 -9606 100616217 MIR1254-2 - - HGNC:41770|miRBase:MI0016747 10 - microRNA 1254-2 miscRNA MIR1254-2 microRNA 1254-2 O - 20121230 -9606 100616218 MIR3135B - - HGNC:41783|miRBase:MI0016809 6 - microRNA 3135b miscRNA MIR3135B microRNA 3135b O - 20121230 -9606 100616219 MIR4765 - - HGNC:41791|miRBase:MI0017406 2 - microRNA 4765 miscRNA MIR4765 microRNA 4765 O - 20121230 -9606 100616220 MIR4736 - - HGNC:41804|miRBase:MI0017373 17 - microRNA 4736 miscRNA MIR4736 microRNA 4736 O - 20121230 -9606 100616221 MIR4662A - - HGNC:41826|miRBase:MI0017290 8 - microRNA 4662a miscRNA MIR4662A microRNA 4662a O - 20121230 -9606 100616222 MIR4487 - - HGNC:41851|miRBase:MI0016848 11 - microRNA 4487 miscRNA MIR4487 microRNA 4487 O - 20121230 -9606 100616223 MIR4509-1 - - HGNC:41860|miRBase:MI0016873 15 - microRNA 4509-1 miscRNA MIR4509-1 microRNA 4509-1 O - 20121230 -9606 100616224 MIR4753 - - HGNC:41527|miRBase:MI0017392 1 - microRNA 4753 miscRNA MIR4753 microRNA 4753 O - 20121230 -9606 100616225 MIR4756 - - HGNC:41529|miRBase:MI0017397 20 - microRNA 4756 miscRNA MIR4756 microRNA 4756 O - 20121230 -9606 100616226 MIR4468 - - HGNC:41533|miRBase:MI0016819 7 - microRNA 4468 miscRNA MIR4468 microRNA 4468 O - 20121230 -9606 100616227 MIR4502 - - HGNC:41534|miRBase:MI0016865 13 - microRNA 4502 miscRNA MIR4502 microRNA 4502 O - 20121230 -9606 100616228 MIR4509-2 - - HGNC:41537|miRBase:MI0016874 15 - microRNA 4509-2 miscRNA MIR4509-2 microRNA 4509-2 O - 20121230 -9606 100616229 MIR4473 - - HGNC:41540|miRBase:MI0016825 9 - microRNA 4473 miscRNA MIR4473 microRNA 4473 O - 20121230 -9606 100616230 MIR4646 - - HGNC:41543|miRBase:MI0017273 6 - microRNA 4646 miscRNA MIR4646 microRNA 4646 O - 20121230 -9606 100616231 MIR4519 - - HGNC:41544|miRBase:MI0016885 16 - microRNA 4519 miscRNA MIR4519 microRNA 4519 O - 20121230 -9606 100616232 MIR4528 - - HGNC:41547|miRBase:MI0016895 18 - microRNA 4528 miscRNA MIR4528 microRNA 4528 O - 20120318 -9606 100616233 MIR4459 - - HGNC:41551|miRBase:MI0016805 5 - microRNA 4459 miscRNA MIR4459 microRNA 4459 O - 20121230 -9606 100616234 MIR4454 - - HGNC:41553|miRBase:MI0016800 4 4q32.2 microRNA 4454 miscRNA MIR4454 microRNA 4454 O - 20121230 -9606 100616235 MIR4457 - - HGNC:41554|miRBase:MI0016803 5 - microRNA 4457 miscRNA MIR4457 microRNA 4457 O - 20121230 -9606 100616236 MIR4669 - - HGNC:41558|miRBase:MI0017300 9 - microRNA 4669 miscRNA MIR4669 microRNA 4669 O - 20121230 -9606 100616237 MIR4640 - - HGNC:41561|miRBase:MI0017267 6 - microRNA 4640 miscRNA MIR4640 microRNA 4640 O - 20121230 -9606 100616238 MIR3529 - - HGNC:41564|miRBase:MI0017351 15 - microRNA 3529 miscRNA MIR3529 microRNA 3529 O - 20121230 -9606 100616239 MIR4705 - - HGNC:41567|miRBase:MI0017338 13 - microRNA 4705 miscRNA MIR4705 microRNA 4705 O - 20121230 -9606 100616240 MIR4496 - - HGNC:41569|miRBase:MI0016858 12 - microRNA 4496 miscRNA MIR4496 microRNA 4496 O - 20121230 -9606 100616241 MIR4717 - - HGNC:41571|miRBase:MI0017352 16 - microRNA 4717 miscRNA MIR4717 microRNA 4717 O - 20121230 -9606 100616242 MIR4673 - - HGNC:41574|miRBase:MI0017304 9 - microRNA 4673 miscRNA MIR4673 microRNA 4673 O - 20121230 -9606 100616243 MIR4759 - - HGNC:41575|miRBase:MI0017400 21 - microRNA 4759 miscRNA MIR4759 microRNA 4759 O - 20121230 -9606 100616244 MIR3976 - - HGNC:41578|miRBase:MI0016994 18 - microRNA 3976 miscRNA MIR3976 microRNA 3976 O - 20121230 -9606 100616245 MIR4661 - - HGNC:41582|miRBase:MI0017289 8 - microRNA 4661 miscRNA MIR4661 microRNA 4661 O - 20121230 -9606 100616246 MIR4799 - - HGNC:41584|miRBase:MI0017446 4 - microRNA 4799 miscRNA MIR4799 microRNA 4799 O - 20121230 -9606 100616247 MIR151B - - HGNC:41588|miRBase:MI0003772 14 - microRNA 151b miscRNA MIR151B microRNA 151b O - 20121230 -9606 100616248 MIR4724 - - HGNC:41590|miRBase:MI0017361 17 - microRNA 4724 miscRNA MIR4724 microRNA 4724 O - 20121230 -9606 100616249 MIR4768 - - HGNC:41592|miRBase:MI0017409 X - microRNA 4768 miscRNA MIR4768 microRNA 4768 O - 20121230 -9606 100616250 MIR3960 - - HGNC:41595|miRBase:MI0016964 9 - microRNA 3960 miscRNA MIR3960 microRNA 3960 O - 20121230 -9606 100616251 MIR1587 - - HGNC:41596|miRBase:MI0016905 X - microRNA 1587 miscRNA MIR1587 microRNA 1587 O - 20121230 -9606 100616252 MIR548AJ2 - - HGNC:41600|miRBase:MI0016815 X Xp21.1 microRNA 548aj-2 miscRNA MIR548AJ2 microRNA 548aj-2 O - 20121230 -9606 100616253 MIR4762 - - HGNC:41603|miRBase:MI0017403 22 - microRNA 4762 miscRNA MIR4762 microRNA 4762 O - 20121230 -9606 100616254 MIR548AH - - HGNC:41605|miRBase:MI0016796 4 - microRNA 548ah miscRNA MIR548AH microRNA 548ah O - 20121230 -9606 100616255 MIR4662B - - HGNC:41607|miRBase:MI0017293 8 - microRNA 4662b miscRNA MIR4662B microRNA 4662b O - 20121230 -9606 100616256 MIR4721 - - HGNC:41609|miRBase:MI0017356 16 - microRNA 4721 miscRNA MIR4721 microRNA 4721 O - 20121230 -9606 100616257 MIR3975 - - HGNC:41613|miRBase:MI0016993 18 - microRNA 3975 miscRNA MIR3975 microRNA 3975 O - 20121230 -9606 100616258 MIR4516 - - HGNC:41617|miRBase:MI0016882 16 - microRNA 4516 miscRNA MIR4516 microRNA 4516 O - 20121230 -9606 100616259 MIR378I - - HGNC:41620|miRBase:MI0016902 22 - microRNA 378i miscRNA MIR378I microRNA 378i O - 20121230 -9606 100616260 MIR4663 - - HGNC:41623|miRBase:MI0017292 8 - microRNA 4663 miscRNA MIR4663 microRNA 4663 O - 20121230 -9606 100616261 MIR4504 - - HGNC:41624|miRBase:MI0016867 14 - microRNA 4504 miscRNA MIR4504 microRNA 4504 O - 20121230 -9606 100616262 MIR4701 - - HGNC:41627|miRBase:MI0017334 12 - microRNA 4701 miscRNA MIR4701 microRNA 4701 O - 20121230 -9606 100616263 MIR4485 - - HGNC:41628|miRBase:MI0016846 11 - microRNA 4485 miscRNA MIR4485 microRNA 4485 O - 20121230 -9606 100616264 MIR4527 - - HGNC:41633|miRBase:MI0016894 18 - microRNA 4527 miscRNA MIR4527 microRNA 4527 O - 20121230 -9606 100616265 MIR4433 - - HGNC:41634|miRBase:MI0016773 2 - microRNA 4433 miscRNA MIR4433 microRNA 4433 O - 20121230 -9606 100616266 MIR4733 - - HGNC:41638|miRBase:MI0017370 17 - microRNA 4733 miscRNA MIR4733 microRNA 4733 O - 20121230 -9606 100616267 MIR4776-1 - - HGNC:41641|miRBase:MI0017419 2 - microRNA 4776-1 miscRNA MIR4776-1 microRNA 4776-1 O - 20121230 -9606 100616268 MIR4472-1 - - HGNC:41644|miRBase:MI0016823 8 - microRNA 4472-1 miscRNA MIR4472-1 microRNA 4472-1 O - 20121230 -9606 100616269 MIR4639 - - HGNC:41645|miRBase:MI0017266 6 - microRNA 4639 miscRNA MIR4639 microRNA 4639 O - 20121230 -9606 100616270 MIR4651 - - HGNC:41647|miRBase:MI0017279 7 - microRNA 4651 miscRNA MIR4651 microRNA 4651 O - 20121230 -9606 100616271 MIR4637 - - HGNC:41651|miRBase:MI0017264 5 - microRNA 4637 miscRNA MIR4637 microRNA 4637 O - 20121230 -9606 100616272 MIR4422 - - HGNC:41654|miRBase:MI0016759 1 - microRNA 4422 miscRNA MIR4422 microRNA 4422 O - 20121230 -9606 100616273 MIR451B - - HGNC:41655|miRBase:MI0017360 17 - microRNA 451b miscRNA MIR451B microRNA 451b O - 20121230 -9606 100616274 MIR4802 - - HGNC:41658|miRBase:MI0017450 4 - microRNA 4802 miscRNA MIR4802 microRNA 4802 O - 20121230 -9606 100616275 MIR4508 - - HGNC:41659|miRBase:MI0016872 15 - microRNA 4508 miscRNA MIR4508 microRNA 4508 O - 20121230 -9606 100616276 MIR4538 - - HGNC:41664|miRBase:MI0016909 14 - microRNA 4538 miscRNA MIR4538 microRNA 4538 O - 20120318 -9606 100616277 MIR4522 - - HGNC:41668|miRBase:MI0016889 17 - microRNA 4522 miscRNA MIR4522 microRNA 4522 O - 20121230 -9606 100616278 MIR4540 - - HGNC:41670|miRBase:MI0016911 9 - microRNA 4540 miscRNA MIR4540 microRNA 4540 O - 20121230 -9606 100616279 MIR3974 - - HGNC:41672|miRBase:MI0016992 12 - microRNA 3974 miscRNA MIR3974 microRNA 3974 O - 20121230 -9606 100616280 MIR4503 - - HGNC:41675|miRBase:MI0016866 14 - microRNA 4503 miscRNA MIR4503 microRNA 4503 O - 20121230 -9606 100616281 MIR4788 - - HGNC:41676|miRBase:MI0017435 3 - microRNA 4788 miscRNA MIR4788 microRNA 4788 O - 20121230 -9606 100616282 MIR4738 - - HGNC:41679|miRBase:MI0017376 17 - microRNA 4738 miscRNA MIR4738 microRNA 4738 O - 20121230 -9606 100616283 MIR4766 - - HGNC:41680|miRBase:MI0017407 22 - microRNA 4766 miscRNA MIR4766 microRNA 4766 O - 20121230 -9606 100616284 MIR4489 - - HGNC:41685|miRBase:MI0016850 11 - microRNA 4489 miscRNA MIR4489 microRNA 4489 O - 20121230 -9606 100616285 MIR4645 - - HGNC:41689|miRBase:MI0017272 6 - microRNA 4645 miscRNA MIR4645 microRNA 4645 O - 20121230 -9606 100616286 MIR4676 - - HGNC:41691|miRBase:MI0017307 10 - microRNA 4676 miscRNA MIR4676 microRNA 4676 O - 20121230 -9606 100616287 MIR4495 - - HGNC:41693|miRBase:MI0016857 12 - microRNA 4495 miscRNA MIR4495 microRNA 4495 O - 20121230 -9606 100616288 MIR4665 - - HGNC:41696|miRBase:MI0017295 9 - microRNA 4665 miscRNA MIR4665 microRNA 4665 O - 20121230 -9606 100616289 MIR4475 - - HGNC:41697|miRBase:MI0016827 9 - microRNA 4475 miscRNA MIR4475 microRNA 4475 O - 20121230 -9606 100616290 MIR4529 - - HGNC:41703|miRBase:MI0016896 18 - microRNA 4529 miscRNA MIR4529 microRNA 4529 O - 20121230 -9606 100616291 MIR4791 - - HGNC:41704|miRBase:MI0017438 3 - microRNA 4791 miscRNA MIR4791 microRNA 4791 O - 20121230 -9606 100616292 MIR4690 - - HGNC:41707|miRBase:MI0017323 11 - microRNA 4690 miscRNA MIR4690 microRNA 4690 O - 20121230 -9606 100616293 MIR4510 - - HGNC:41708|miRBase:MI0016876 15 - microRNA 4510 miscRNA MIR4510 microRNA 4510 O - 20121230 -9606 100616294 MIR4740 - - HGNC:41711|miRBase:MI0017378 17 - microRNA 4740 miscRNA MIR4740 microRNA 4740 O - 20121230 -9606 100616295 MIR4764 - - HGNC:41714|miRBase:MI0017405 22 - microRNA 4764 miscRNA MIR4764 microRNA 4764 O - 20121230 -9606 100616296 MIR4678 - - HGNC:41717|miRBase:MI0017309 10 - microRNA 4678 miscRNA MIR4678 microRNA 4678 O - 20121230 -9606 100616297 MIR3977 - - HGNC:41721|miRBase:MI0016995 5 - microRNA 3977 miscRNA MIR3977 microRNA 3977 O - 20121230 -9606 100616298 MIR4419B - - HGNC:41724|miRBase:MI0016861 12 - microRNA 4419b miscRNA MIR4419B microRNA 4419b O - 20121230 -9606 100616299 MIR4450 - - HGNC:41725|miRBase:MI0016795 4 - microRNA 4450 miscRNA MIR4450 microRNA 4450 O - 20121230 -9606 100616300 MIR4710 - - HGNC:41727|miRBase:MI0017344 14 - microRNA 4710 miscRNA MIR4710 microRNA 4710 O - 20121230 -9606 100616301 MIR4674 - - HGNC:41729|miRBase:MI0017305 9 - microRNA 4674 miscRNA MIR4674 microRNA 4674 O - 20121230 -9606 100616302 MIR548X2 - - HGNC:41734|miRBase:MI0016833 13 - microRNA 548x-2 miscRNA MIR548X2 microRNA 548x-2 O - 20121230 -9606 100616303 MIR3688-2 - - HGNC:41735|miRBase:MI0017447 4 - microRNA 3688-2 miscRNA MIR3688-2 microRNA 3688-2 O - 20121230 -9606 100616304 MIR4499 - - HGNC:41739|miRBase:MI0016862 13 - microRNA 4499 miscRNA MIR4499 microRNA 4499 O - 20121230 -9606 100616305 MIR548AE1 - - HGNC:41742|miRBase:MI0016779 2 - microRNA 548ae-1 miscRNA MIR548AE1 microRNA 548ae-1 O - 20121230 -9606 100616306 MIR378H - - HGNC:41744|miRBase:MI0016808 5 - microRNA 378h miscRNA MIR378H microRNA 378h O - 20121230 -9606 100616307 MIR4757 - - HGNC:41746|miRBase:MI0017398 2 - microRNA 4757 miscRNA MIR4757 microRNA 4757 O - 20121230 -9606 100616308 MIR4666A - MIR4666|hsa-mir-4666a HGNC:41750|miRBase:MI0017296 1 - microRNA 4666a miscRNA MIR4666A microRNA 4666a O - 20121230 -9606 100616309 MIR4472-2 - - HGNC:41752|miRBase:MI0016824 12 - microRNA 4472-2 miscRNA MIR4472-2 microRNA 4472-2 O - 20121230 -9606 100616310 MIR4650-1 - - HGNC:41755|miRBase:MI0017277 7 - microRNA 4650-1 miscRNA MIR4650-1 microRNA 4650-1 O - 20121230 -9606 100616311 MIR3973 - - HGNC:41756|miRBase:MI0016991 11 - microRNA 3973 miscRNA MIR3973 microRNA 3973 O - 20121230 -9606 100616312 MIR4478 - - HGNC:41759|miRBase:MI0016831 9 - microRNA 4478 miscRNA MIR4478 microRNA 4478 O - 20121230 -9606 100616313 MIR4749 - - HGNC:41760|miRBase:MI0017388 19 - microRNA 4749 miscRNA MIR4749 microRNA 4749 O - 20121230 -9606 100616314 MIR4750 - - HGNC:41765|miRBase:MI0017389 19 - microRNA 4750 miscRNA MIR4750 microRNA 4750 O - 20121230 -9606 100616315 MIR4781 - - HGNC:41769|miRBase:MI0017426 1 - microRNA 4781 miscRNA MIR4781 microRNA 4781 O - 20121230 -9606 100616316 MIR4524A - MIR4524|hsa-mir-4524a HGNC:41771|miRBase:MI0016891 17 - microRNA 4524a miscRNA MIR4524A microRNA 4524a O - 20121230 -9606 100616317 MIR4777 - - HGNC:41773|miRBase:MI0017421 2 - microRNA 4777 miscRNA MIR4777 microRNA 4777 O - 20121230 -9606 100616318 MIR4664 - - HGNC:41777|miRBase:MI0017294 8 - microRNA 4664 miscRNA MIR4664 microRNA 4664 O - 20121230 -9606 100616319 MIR4493 - - HGNC:41778|miRBase:MI0016855 11 - microRNA 4493 miscRNA MIR4493 microRNA 4493 O - 20121230 -9606 100616320 MIR4481 - - HGNC:41781|miRBase:MI0016842 10 - microRNA 4481 miscRNA MIR4481 microRNA 4481 O - 20121230 -9606 100616321 MIR378G - - HGNC:41785|miRBase:MI0016761 1 - microRNA 378g miscRNA MIR378G microRNA 378g O - 20121230 -9606 100616322 MIR4682 - - HGNC:41788|miRBase:MI0017314 10 - microRNA 4682 miscRNA MIR4682 microRNA 4682 O - 20121230 -9606 100616323 MIR4482-1 - MIR4482|hsa-mir-4482-1 HGNC:41792|miRBase:MI0016843 10 - microRNA 4482-1 miscRNA MIR4482-1 microRNA 4482-1 O - 20121230 -9606 100616324 MIR1245B - - HGNC:41794|miRBase:MI0017431 2 - microRNA 1245b miscRNA MIR1245B microRNA 1245b O - 20121230 -9606 100616325 MIR4460 - - HGNC:41795|miRBase:MI0016806 5 - microRNA 4460 miscRNA MIR4460 microRNA 4460 O - 20121230 -9606 100616326 MIR4636 - - HGNC:41798|miRBase:MI0017263 5 - microRNA 4636 miscRNA MIR4636 microRNA 4636 O - 20121230 -9606 100616327 MIR4484 - - HGNC:41799|miRBase:MI0016845 10 - microRNA 4484 miscRNA MIR4484 microRNA 4484 O - 20121230 -9606 100616328 MIR4424 - - HGNC:41805|miRBase:MI0016763 1 - microRNA 4424 miscRNA MIR4424 microRNA 4424 O - 20121230 -9606 100616329 MIR4700 - - HGNC:41806|miRBase:MI0017333 12 - microRNA 4700 miscRNA MIR4700 microRNA 4700 O - 20121230 -9606 100616330 MIR4491 - - HGNC:41808|miRBase:MI0016853 11 - microRNA 4491 miscRNA MIR4491 microRNA 4491 O - 20121230 -9606 100616331 MIR4650-2 - - HGNC:41810|miRBase:MI0017278 7 - microRNA 4650-2 miscRNA MIR4650-2 microRNA 4650-2 O - 20121230 -9606 100616332 MIR4716 - - HGNC:41812|miRBase:MI0017350 15 - microRNA 4716 miscRNA MIR4716 microRNA 4716 O - 20121230 -9606 100616333 MIR3689C - - HGNC:41816|miRBase:MI0016832 9 - microRNA 3689c miscRNA MIR3689C microRNA 3689c O - 20121230 -9606 100616334 MIR4790 - - HGNC:41820|miRBase:MI0017437 3 - microRNA 4790 miscRNA MIR4790 microRNA 4790 O - 20121230 -9606 100616335 MIR2964A - - HGNC:41823|miRBase:MI0017299 9 - microRNA 2964a miscRNA MIR2964A microRNA 2964a O - 20121230 -9606 100616336 MIR548AB - - HGNC:41825|miRBase:MI0016752 3 - microRNA 548ab miscRNA MIR548AB microRNA 548ab O - 20121230 -9606 100616337 MIR4747 - - HGNC:41827|miRBase:MI0017386 19 - microRNA 4747 miscRNA MIR4747 microRNA 4747 O - 20121230 -9606 100616338 MIR4794 - - HGNC:41829|miRBase:MI0017441 1 - microRNA 4794 miscRNA MIR4794 microRNA 4794 O - 20121230 -9606 100616339 MIR548AE2 - - HGNC:41831|miRBase:MI0016780 5 - microRNA 548ae-2 miscRNA MIR548AE2 microRNA 548ae-2 O - 20121230 -9606 100616340 MIR4758 - - HGNC:41836|miRBase:MI0017399 20 - microRNA 4758 miscRNA MIR4758 microRNA 4758 O - 20121230 -9606 100616341 MIR4435-2 - - HGNC:41837|miRBase:MI0016777 2 - microRNA 4435-2 miscRNA MIR4435-2 microRNA 4435-2 O - 20121230 -9606 100616342 MIR4638 - - HGNC:41841|miRBase:MI0017265 5 - microRNA 4638 miscRNA MIR4638 microRNA 4638 O - 20121230 -9606 100616343 MIR4677 - - HGNC:41844|miRBase:MI0017308 1 - microRNA 4677 miscRNA MIR4677 microRNA 4677 O - 20121230 -9606 100616344 MIR3689D2 - - HGNC:41846|miRBase:MI0016835 9 - microRNA 3689d-2 miscRNA MIR3689D2 microRNA 3689d-2 O - 20121230 -9606 100616345 MIR4426 - - HGNC:41848|miRBase:MI0016765 1 - microRNA 4426 miscRNA MIR4426 microRNA 4426 O - 20121230 -9606 100616346 MIR4649 - - HGNC:41852|miRBase:MI0017276 7 - microRNA 4649 miscRNA MIR4649 microRNA 4649 O - 20121230 -9606 100616347 MIR548AI - - HGNC:41854|miRBase:MI0016813 6 - microRNA 548ai miscRNA MIR548AI microRNA 548ai O - 20121230 -9606 100616348 MIR4659A - - HGNC:41857|miRBase:MI0017287 8 - microRNA 4659a miscRNA MIR4659A microRNA 4659a O - 20121230 -9606 100616349 MIR4451 - - HGNC:41858|miRBase:MI0016797 4 - microRNA 4451 miscRNA MIR4451 microRNA 4451 O - 20121230 -9606 100616350 MIR4660 - - HGNC:41861|miRBase:MI0017288 8 - microRNA 4660 miscRNA MIR4660 microRNA 4660 O - 20121230 -9606 100616351 MIR4670 - - HGNC:41862|miRBase:MI0017301 9 - microRNA 4670 miscRNA MIR4670 microRNA 4670 O - 20121230 -9606 100616352 MIR4642 - - HGNC:41865|miRBase:MI0017269 6 - microRNA 4642 miscRNA MIR4642 microRNA 4642 O - 20121230 -9606 100616353 MIR4532 - - HGNC:41869|miRBase:MI0016899 20 - microRNA 4532 miscRNA MIR4532 microRNA 4532 O - 20121230 -9606 100616354 MIR550A3 - - HGNC:41870|miRBase:MI0003762 7 - microRNA 550a-3 miscRNA MIR550A3 microRNA 550a-3 O - 20121230 -9606 100616355 MIR4531 - - HGNC:41872|miRBase:MI0016898 19 - microRNA 4531 miscRNA MIR4531 microRNA 4531 O - 20121230 -9606 100616356 MIR4774 - - HGNC:41873|miRBase:MI0017417 2 2q24.3 microRNA 4774 miscRNA MIR4774 microRNA 4774 O - 20121230 -9606 100616357 MIR3591 - - HGNC:41875|miRBase:MI0017383 18 - microRNA 3591 miscRNA MIR3591 microRNA 3591 O - 20121230 -9606 100616358 MIR4800 - - HGNC:41877|miRBase:MI0017448 4 - microRNA 4800 miscRNA MIR4800 microRNA 4800 O - 20121230 -9606 100616359 MIR4730 - - HGNC:41880|miRBase:MI0017367 17 - microRNA 4730 miscRNA MIR4730 microRNA 4730 O - 20121230 -9606 100616360 MIR2467 - - HGNC:41881|miRBase:MI0017432 2 - microRNA 2467 miscRNA MIR2467 microRNA 2467 O - 20121230 -9606 100616361 MIR4775 - - HGNC:41885|miRBase:MI0017418 2 - microRNA 4775 miscRNA MIR4775 microRNA 4775 O - 20121230 -9606 100616362 MIR4533 - - HGNC:41886|miRBase:MI0016900 20 - microRNA 4533 miscRNA MIR4533 microRNA 4533 O - 20121230 -9606 100616363 MIR4735 - - HGNC:41888|miRBase:MI0017372 1 - microRNA 4735 miscRNA MIR4735 microRNA 4735 O - 20121230 -9606 100616364 MIR4785 - - HGNC:41889|miRBase:MI0017430 2 - microRNA 4785 miscRNA MIR4785 microRNA 4785 O - 20121209 -9606 100616365 MIR4425 - - HGNC:41891|miRBase:MI0016764 1 - microRNA 4425 miscRNA MIR4425 microRNA 4425 O - 20121230 -9606 100616366 MIR4743 - - HGNC:41894|miRBase:MI0017381 18 - microRNA 4743 miscRNA MIR4743 microRNA 4743 O - 20121230 -9606 100616367 MIR4467 - - HGNC:41896|miRBase:MI0016818 7 - microRNA 4467 miscRNA MIR4467 microRNA 4467 O - 20121230 -9606 100616368 MIR4688 - - HGNC:41897|miRBase:MI0017321 11 - microRNA 4688 miscRNA MIR4688 microRNA 4688 O - 20121230 -9606 100616369 MIR4713 - - HGNC:41899|miRBase:MI0017347 15 - microRNA 4713 miscRNA MIR4713 microRNA 4713 O - 20121230 -9606 100616370 MIR4771-1 - - HGNC:41901|miRBase:MI0017412 2 - microRNA 4771-1 miscRNA MIR4771-1 microRNA 4771-1 O - 20121230 -9606 100616371 MIR4746 - - HGNC:41904|miRBase:MI0017385 19 - microRNA 4746 miscRNA MIR4746 microRNA 4746 O - 20121230 -9606 100616372 MIR4659B - - HGNC:41530|miRBase:MI0017291 8 - microRNA 4659b miscRNA MIR4659B microRNA 4659b O - 20121230 -9606 100616373 MIR4770 - - HGNC:41542|miRBase:MI0017411 X - microRNA 4770 miscRNA MIR4770 microRNA 4770 O - 20121230 -9606 100616374 MIR4539 - - HGNC:41546|miRBase:MI0016910 14 - microRNA 4539 miscRNA MIR4539 microRNA 4539 O - 20120318 -9606 100616375 MIR4438 - - HGNC:41555|miRBase:MI0016781 2 - microRNA 4438 miscRNA MIR4438 microRNA 4438 O - 20121230 -9606 100616376 MIR4492 - - HGNC:41563|miRBase:MI0016854 11 - microRNA 4492 miscRNA MIR4492 microRNA 4492 O - 20121230 -9606 100616377 MIR4803 - - HGNC:41568|miRBase:MI0017451 5 - microRNA 4803 miscRNA MIR4803 microRNA 4803 O - 20121230 -9606 100616378 MIR4784 - - HGNC:41580|miRBase:MI0017429 2 - microRNA 4784 miscRNA MIR4784 microRNA 4784 O - 20121230 -9606 100616379 MIR4511 - - HGNC:41589|miRBase:MI0016877 15 - microRNA 4511 miscRNA MIR4511 microRNA 4511 O - 20121230 -9606 100616380 MIR4671 - - HGNC:41598|miRBase:MI0017302 1 - microRNA 4671 miscRNA MIR4671 microRNA 4671 O - 20121230 -9606 100616381 MIR4456 - - HGNC:41606|miRBase:MI0016802 5 - microRNA 4456 miscRNA MIR4456 microRNA 4456 O - 20121230 -9606 100616382 MIR4509-3 - - HGNC:41610|miRBase:MI0016875 15 - microRNA 4509-3 miscRNA MIR4509-3 microRNA 4509-3 O - 20121230 -9606 100616383 MIR4675 - - HGNC:41619|miRBase:MI0017306 10 - microRNA 4675 miscRNA MIR4675 microRNA 4675 O - 20121230 -9606 100616384 MIR548AC - - HGNC:41626|miRBase:MI0016762 1 - microRNA 548ac miscRNA MIR548AC microRNA 548ac O - 20121230 -9606 100616385 MIR4732 - - HGNC:41639|miRBase:MI0017369 17 - microRNA 4732 miscRNA MIR4732 microRNA 4732 O - 20121230 -9606 100616386 MIR4654 - - HGNC:41643|miRBase:MI0017282 1 - microRNA 4654 miscRNA MIR4654 microRNA 4654 O - 20121230 -9606 100616387 MIR3064 - - HGNC:41652|miRBase:MI0017375 17 - microRNA 3064 miscRNA MIR3064 microRNA 3064 O - 20121230 -9606 100616388 MIR4723 - - HGNC:41660|miRBase:MI0017359 17 - microRNA 4723 miscRNA MIR4723 microRNA 4723 O - 20121230 -9606 100616389 MIR4463 - - HGNC:41665|miRBase:MI0016811 6 - microRNA 4463 miscRNA MIR4463 microRNA 4463 O - 20121230 -9606 100616390 MIR4427 - - HGNC:41678|miRBase:MI0016766 1 - microRNA 4427 miscRNA MIR4427 microRNA 4427 O - 20121230 -9606 100616391 MIR4684 - - HGNC:41695|miRBase:MI0017316 1 - microRNA 4684 miscRNA MIR4684 microRNA 4684 O - 20121230 -9606 100616392 MIR4773-1 - - HGNC:41699|miRBase:MI0017415 2 - microRNA 4773-1 miscRNA MIR4773-1 microRNA 4773-1 O - 20121230 -9606 100616393 MIR4657 - - HGNC:41706|miRBase:MI0017285 7 - microRNA 4657 miscRNA MIR4657 microRNA 4657 O - 20121230 -9606 100616394 MIR4444-1 - MIR4444|hsa-mir-4444-1 HGNC:41710|miRBase:MI0016787 2 - microRNA 4444-1 miscRNA MIR4444-1 microRNA 4444-1 O - 20121230 -9606 100616395 MIR4789 - - HGNC:41719|miRBase:MI0017436 3 - microRNA 4789 miscRNA MIR4789 microRNA 4789 O - 20121230 -9606 100616396 MIR4712 - - HGNC:41732|miRBase:MI0017346 15 - microRNA 4712 miscRNA MIR4712 microRNA 4712 O - 20121230 -9606 100616397 MIR4440 - - HGNC:41740|miRBase:MI0016783 2 - microRNA 4440 miscRNA MIR4440 microRNA 4440 O - 20121230 -9606 100616398 MIR4681 - - HGNC:41753|miRBase:MI0017313 10 - microRNA 4681 miscRNA MIR4681 microRNA 4681 O - 20121230 -9606 100616399 MIR4436A - - HGNC:41762|miRBase:MI0016776 2 - microRNA 4436a miscRNA MIR4436A microRNA 4436a O - 20121230 -9606 100616400 MIR3198-2 - - HGNC:41766|miRBase:MI0017335 12 - microRNA 3198-2 miscRNA MIR3198-2 microRNA 3198-2 O - 20121230 -9606 100616401 MIR4520A - - HGNC:41775|miRBase:MI0016886 17 - microRNA 4520a miscRNA MIR4520A microRNA 4520a O - 20121230 -9606 100616402 MIR4696 - - HGNC:41780|miRBase:MI0017329 11 - microRNA 4696 miscRNA MIR4696 microRNA 4696 O - 20121230 -9606 100616403 MIR4691 - - HGNC:41796|miRBase:MI0017324 11 - microRNA 4691 miscRNA MIR4691 microRNA 4691 O - 20121230 -9606 100616404 MIR4515 - - HGNC:41800|miRBase:MI0016881 15 - microRNA 4515 miscRNA MIR4515 microRNA 4515 O - 20121230 -9606 100616405 MIR4518 - - HGNC:41809|miRBase:MI0016884 16 - microRNA 4518 miscRNA MIR4518 microRNA 4518 O - 20121230 -9606 100616406 MIR4521 - - HGNC:41813|miRBase:MI0016887 17 - microRNA 4521 miscRNA MIR4521 microRNA 4521 O - 20121230 -9606 100616407 MIR4443 - - HGNC:41830|miRBase:MI0016786 3 - microRNA 4443 miscRNA MIR4443 microRNA 4443 O - 20121230 -9606 100616408 MIR5047 - - HGNC:41834|miRBase:MI0017932 17 - microRNA 5047 miscRNA MIR5047 microRNA 5047 O - 20121230 -9606 100616409 MIR4711 - - HGNC:41847|miRBase:MI0017345 1 - microRNA 4711 miscRNA MIR4711 microRNA 4711 O - 20121230 -9606 100616410 MIR4692 - - HGNC:41856|miRBase:MI0017325 11 - microRNA 4692 miscRNA MIR4692 microRNA 4692 O - 20121230 -9606 100616411 ERVK-16 - M3.8|c10_A HGNC:39023 10 10p14 endogenous retrovirus group K, member 16 unknown ERVK-16 endogenous retrovirus group K, member 16 O - 20120801 -9606 100616412 ERVK3-5 - HML6-c12 HGNC:39110 12 12q24.12 endogenous retrovirus group K3, member 5 unknown ERVK3-5 endogenous retrovirus group K3, member 5 O - 20121017 -9606 100616413 MIR4462 - - HGNC:41549|miRBase:MI0016810 6 - microRNA 4462 miscRNA MIR4462 microRNA 4462 O - 20121230 -9606 100616414 MIR4761 - - HGNC:41591|miRBase:MI0017402 22 - microRNA 4761 miscRNA MIR4761 microRNA 4761 O - 20121230 -9606 100616415 MIR4535 - - HGNC:41629|miRBase:MI0016903 22 - microRNA 4535 miscRNA MIR4535 microRNA 4535 O - 20121230 -9606 100616416 MIR4727 - - HGNC:41709|miRBase:MI0017364 17 - microRNA 4727 miscRNA MIR4727 microRNA 4727 O - 20121230 -9606 100616417 MIR4786 - - HGNC:41751|miRBase:MI0017433 2 - microRNA 4786 miscRNA MIR4786 microRNA 4786 O - 20121230 -9606 100616418 MIR4773-2 - - HGNC:41790|miRBase:MI0017416 2 - microRNA 4773-2 miscRNA MIR4773-2 microRNA 4773-2 O - 20121230 -9606 100616419 MIR4434 - - HGNC:41832|miRBase:MI0016774 2 - microRNA 4434 miscRNA MIR4434 microRNA 4434 O - 20121230 -9606 100616420 MIR4744 - - HGNC:41866|miRBase:MI0017382 18 - microRNA 4744 miscRNA MIR4744 microRNA 4744 O - 20121230 -9606 100616421 MIR4689 - - HGNC:41895|miRBase:MI0017322 1 - microRNA 4689 miscRNA MIR4689 microRNA 4689 O - 20121230 -9606 100616422 MIR4537 - - HGNC:41682|miRBase:MI0016908 14 - microRNA 4537 miscRNA MIR4537 microRNA 4537 O - 20120318 -9606 100616423 MIR4703 - - HGNC:41817|miRBase:MI0017336 13 - microRNA 4703 miscRNA MIR4703 microRNA 4703 O - 20121230 -9606 100616424 MIR4707 - - HGNC:41531|miRBase:MI0017340 14 - microRNA 4707 miscRNA MIR4707 microRNA 4707 O - 20121230 -9606 100616425 MIR4748 - - HGNC:41557|miRBase:MI0017387 19 - microRNA 4748 miscRNA MIR4748 microRNA 4748 O - 20121230 -9606 100616426 MIR4694 - - HGNC:41586|miRBase:MI0017327 11 - microRNA 4694 miscRNA MIR4694 microRNA 4694 O - 20121230 -9606 100616427 MIR5096 - - HGNC:41611|miRBase:MI0018004 4 - microRNA 5096 miscRNA MIR5096 microRNA 5096 O - 20121230 -9606 100616428 MIR548AM - - HGNC:41637|miRBase:MI0016904 X - microRNA 548am miscRNA MIR548AM microRNA 548am O - 20121230 -9606 100616429 MIR4672 - - HGNC:41662|miRBase:MI0017303 9 - microRNA 4672 miscRNA MIR4672 microRNA 4672 O - 20121230 -9606 100616430 MIR4644 - - HGNC:41687|miRBase:MI0017271 6 - microRNA 4644 miscRNA MIR4644 microRNA 4644 O - 20121230 -9606 100616431 MIR4431 - - HGNC:41738|miRBase:MI0016771 2 - microRNA 4431 miscRNA MIR4431 microRNA 4431 O - 20121230 -9606 100616432 MIR4714 - - HGNC:41763|miRBase:MI0017348 15 - microRNA 4714 miscRNA MIR4714 microRNA 4714 O - 20121230 -9606 100616433 MIR4418 - - HGNC:41789|miRBase:MI0016754 1 - microRNA 4418 miscRNA MIR4418 microRNA 4418 O - 20121230 -9606 100616434 MIR4755 - - HGNC:41815|miRBase:MI0017395 20 - microRNA 4755 miscRNA MIR4755 microRNA 4755 O - 20121230 -9606 100616435 MIR4801 - - HGNC:41840|miRBase:MI0017449 4 - microRNA 4801 miscRNA MIR4801 microRNA 4801 O - 20121230 -9606 100616436 MIR4449 - - HGNC:41864|MIM:614627|miRBase:MI0016792 4 - microRNA 4449 miscRNA MIR4449 microRNA 4449 O - 20121230 -9606 100616437 MIR1343 - - HGNC:41902|miRBase:MI0017320 11 - microRNA 1343 miscRNA MIR1343 microRNA 1343 O - 20121230 -9606 100616438 MIR4632 - - HGNC:41593|miRBase:MI0017259 1 - microRNA 4632 miscRNA MIR4632 microRNA 4632 O - 20121230 -9606 100616439 MIR4658 - - HGNC:41673|miRBase:MI0017286 7 - microRNA 4658 miscRNA MIR4658 microRNA 4658 O - 20121230 -9606 100616440 MIR548AG2 - - HGNC:41745|miRBase:MI0016794 20 - microRNA 548ag-2 miscRNA MIR548AG2 microRNA 548ag-2 O - 20121230 -9606 100616441 MIR4474 - - HGNC:41821|miRBase:MI0016826 9 - microRNA 4474 miscRNA MIR4474 microRNA 4474 O - 20121230 -9606 100616442 ERVK-12 - - HGNC:39007 4 4q32.3 endogenous retrovirus group K, member 12 unknown ERVK-12 endogenous retrovirus group K, member 12 O - 20120726 -9606 100616443 ERVK-15 - P1.10|c7_C HGNC:39022 7 7q34 endogenous retrovirus group K, member 15 unknown ERVK-15 endogenous retrovirus group K, member 15 O - 20120801 -9606 100616444 ERVK-20 - c11_B|env HGNC:39031 11 11q23.3 endogenous retrovirus group K, member 20 unknown ERVK-20 endogenous retrovirus group K, member 20 O - 20121017 -9606 100616445 ERVK-22 - c19_A HGNC:39036 19 19p13.3 endogenous retrovirus group K, member 22 unknown ERVK-22 endogenous retrovirus group K, member 22 O - 20120726 -9606 100616446 ERVH-1 - - HGNC:39053 4 4p15.2 endogenous retrovirus group H, member 1 unknown ERVH-1 endogenous retrovirus group H, member 1 O - 20121017 -9606 100616447 MIR4780 - - HGNC:41552|miRBase:MI0017424 2 - microRNA 4780 miscRNA MIR4780 microRNA 4780 O - 20121230 -9606 100616448 MIR4792 - miR-4792 HGNC:41577|miRBase:MI0017439 3 - microRNA 4792 miscRNA MIR4792 microRNA 4792 O - 20121230 -9606 100616449 MIR4725 - - HGNC:41608|miRBase:MI0017362 17 - microRNA 4725 miscRNA MIR4725 microRNA 4725 O - 20121230 -9606 100616450 MIR548AG1 - - HGNC:41625|miRBase:MI0016793 4 - microRNA 548ag-1 miscRNA MIR548AG1 microRNA 548ag-1 O - 20121230 -9606 100616451 MIR4471 - - HGNC:41657|miRBase:MI0016822 8 - microRNA 4471 miscRNA MIR4471 microRNA 4471 O - 20121230 -9606 100616452 MIR2682 - - HGNC:41688|miRBase:MI0012063 1 - microRNA 2682 miscRNA MIR2682 microRNA 2682 O - 20121230 -9606 100616453 MIR4687 - - HGNC:41712|miRBase:MI0017319 11 - microRNA 4687 miscRNA MIR4687 microRNA 4687 O - 20121230 -9606 100616454 MIR4497 - - HGNC:41737|miRBase:MI0016859 12 - microRNA 4497 miscRNA MIR4497 microRNA 4497 O - 20121230 -9606 100616455 MIR548H5 - - HGNC:41768|miRBase:MI0016751 6 - microRNA 548h-5 miscRNA MIR548H5 microRNA 548h-5 O - 20121230 -9606 100616456 MIR4476 - - HGNC:41793|miRBase:MI0016828 9 - microRNA 4476 miscRNA MIR4476 microRNA 4476 O - 20121230 -9606 100616457 MIR4693 - - HGNC:41818|miRBase:MI0017326 11 - microRNA 4693 miscRNA MIR4693 microRNA 4693 O - 20121230 -9606 100616458 MIR5095 - - HGNC:41849|miRBase:MI0018001 1 - microRNA 5095 miscRNA MIR5095 microRNA 5095 O - 20121230 -9606 100616459 MIR4745 - - HGNC:41868|miRBase:MI0017384 19 - microRNA 4745 miscRNA MIR4745 microRNA 4745 O - 20121230 -9606 100616460 MIR3689E - - HGNC:41887|miRBase:MI0016836 9 - microRNA 3689e miscRNA MIR3689E microRNA 3689e O - 20121230 -9606 100616461 ERVH-2 - HERV-HX HGNC:39054 X Xp22.32 endogenous retrovirus group H, member 2 unknown ERVH-2 endogenous retrovirus group H, member 2 O - 20121017 -9606 100616462 ERVK3-3 - HML6-c5 HGNC:39108 5 5q13.2 endogenous retrovirus group K3, member 3 unknown ERVK3-3 endogenous retrovirus group K3, member 3 O - 20121017 -9606 100616463 MIR4452 - - HGNC:41539|miRBase:MI0016798 4 - microRNA 4452 miscRNA MIR4452 microRNA 4452 O - 20121230 -9606 100616464 MIR4778 - - HGNC:41648|miRBase:MI0017422 2 - microRNA 4778 miscRNA MIR4778 microRNA 4778 O - 20121230 -9606 100616465 MIR4656 - - HGNC:41749|miRBase:MI0017284 7 - microRNA 4656 miscRNA MIR4656 microRNA 4656 O - 20121230 -9606 100616466 MIR4520B - - HGNC:41839|miRBase:MI0017358 17 - microRNA 4520b miscRNA MIR4520B microRNA 4520b O - 20121230 -9606 100616467 MIR4767 - - HGNC:41548|miRBase:MI0017408 X - microRNA 4767 miscRNA MIR4767 microRNA 4767 O - 20121230 -9606 100616468 MIR4742 - - HGNC:41565|miRBase:MI0017380 1 - microRNA 4742 miscRNA MIR4742 microRNA 4742 O - 20121230 -9606 100616469 MIR4429 - - HGNC:41579|miRBase:MI0016768 2 - microRNA 4429 miscRNA MIR4429 microRNA 4429 O - 20121230 -9606 100616470 MIR4488 - - HGNC:41599|miRBase:MI0016849 11 - microRNA 4488 miscRNA MIR4488 microRNA 4488 O - 20121230 -9606 100616471 MIR4798 - - HGNC:41616|miRBase:MI0017445 4 - microRNA 4798 miscRNA MIR4798 microRNA 4798 O - 20121230 -9606 100616472 MIR4776-2 - - HGNC:41631|miRBase:MI0017420 2 - microRNA 4776-2 miscRNA MIR4776-2 microRNA 4776-2 O - 20121230 -9606 100616473 MIR4432 - - HGNC:41649|miRBase:MI0016772 2 - microRNA 4432 miscRNA MIR4432 microRNA 4432 O - 20121230 -9606 100616474 MIR4715 - - HGNC:41666|miRBase:MI0017349 15 - microRNA 4715 miscRNA MIR4715 microRNA 4715 O - 20121230 -9606 100616475 MIR548AD - - HGNC:41683|miRBase:MI0016770 2 - microRNA 548ad miscRNA MIR548AD microRNA 548ad O - 20121230 -9606 100616476 MIR4446 - - HGNC:41700|miRBase:MI0016789 3 - microRNA 4446 miscRNA MIR4446 microRNA 4446 O - 20121230 -9606 100616477 MIR4442 - - HGNC:41718|miRBase:MI0016785 3 - microRNA 4442 miscRNA MIR4442 microRNA 4442 O - 20121230 -9606 100616478 MIR4494 - - HGNC:41731|miRBase:MI0016856 12 - microRNA 4494 miscRNA MIR4494 microRNA 4494 O - 20121230 -9606 100616479 MIR4635 - - HGNC:41748|miRBase:MI0017262 5 - microRNA 4635 miscRNA MIR4635 microRNA 4635 O - 20121230 -9606 100616480 MIR4479 - - HGNC:41767|miRBase:MI0016838 9 - microRNA 4479 miscRNA MIR4479 microRNA 4479 O - 20121230 -9606 100616481 MIR4423 - - HGNC:41784|miRBase:MI0016760 1 - microRNA 4423 miscRNA MIR4423 microRNA 4423 O - 20121230 -9606 100616482 MIR4685 - - HGNC:41802|miRBase:MI0017317 10 - microRNA 4685 miscRNA MIR4685 microRNA 4685 O - 20121230 -9606 100616483 MIR4751 - - HGNC:41819|miRBase:MI0017390 19 - microRNA 4751 miscRNA MIR4751 microRNA 4751 O - 20121230 -9606 100616484 MIR4470 - - HGNC:41833|miRBase:MI0016821 8 - microRNA 4470 miscRNA MIR4470 microRNA 4470 O - 20121230 -9606 100616485 MIR4447 - - HGNC:41850|miRBase:MI0016790 3 - microRNA 4447 miscRNA MIR4447 microRNA 4447 O - 20121230 -9606 100616486 MIR4698 - - HGNC:41867|miRBase:MI0017331 12 - microRNA 4698 miscRNA MIR4698 microRNA 4698 O - 20121230 -9606 100616487 MIR4517 - - HGNC:41878|miRBase:MI0016883 16 - microRNA 4517 miscRNA MIR4517 microRNA 4517 O - 20121230 -9606 100616488 MIR548AK - - HGNC:41893|miRBase:MI0016840 10 - microRNA 548ak miscRNA MIR548AK microRNA 548ak O - 20121230 -9606 100616489 MIR4417 - - HGNC:41535|miRBase:MI0016753 1 - microRNA 4417 miscRNA MIR4417 microRNA 4417 O - 20121230 -9606 100616490 MIR4706 - - HGNC:41576|miRBase:MI0017339 14 - microRNA 4706 miscRNA MIR4706 microRNA 4706 O - 20121230 -9606 100616491 MIR3978 - - HGNC:41630|miRBase:MI0016996 X - microRNA 3978 miscRNA MIR3978 microRNA 3978 O - 20121230 -9606 100616492 MIR378F - - HGNC:41686|miRBase:MI0016756 1 - microRNA 378f miscRNA MIR378F microRNA 378f O - 20121230 -9606 100616493 MIR4441 - - HGNC:41728|miRBase:MI0016784 2 - microRNA 4441 miscRNA MIR4441 microRNA 4441 O - 20121230 -9606 100616494 MIR1269B - - HGNC:41787|miRBase:MI0016888 17 - microRNA 1269b miscRNA MIR1269B microRNA 1269b O - 20121230 -9606 100616495 MIR2392 - - HGNC:41843|miRBase:MI0016870 14 - microRNA 2392 miscRNA MIR2392 microRNA 2392 O - 20121230 -9606 100616496 ERVW-4 - C187-23|pol HGNC:39043 15 15q21.3 endogenous retrovirus group W, member 4 unknown ERVW-4 endogenous retrovirus group W, member 4 O - 20121017 -9606 100616497 ERV9-1 - pTR2 HGNC:39060 11 11q13.2 endogenous retrovirus group 9, member 1 unknown ERV9-1 endogenous retrovirus group 9, member 1 O - 20121017 -9606 100616498 MIR378E - - HGNC:41671|miRBase:MI0016750 5 - microRNA 378e miscRNA MIR378E microRNA 378e O - 20121230 -9606 100616499 MIR4435-1 - - HGNC:41713|miRBase:MI0016775 2 - microRNA 4435-1 miscRNA MIR4435-1 microRNA 4435-1 O - 20121230 -9606 100616500 MIR4683 - - HGNC:41883|miRBase:MI0017315 10 - microRNA 4683 miscRNA MIR4683 microRNA 4683 O - 20121230 -9606 100616530 LOC100616530 - - - 8 - tospeak miscRNA - - - - 20121230 -9606 100616668 TPTE2P5 - - HGNC:42356 13 13q14.11 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 pseudo TPTE2P5 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 O - 20121230 -9606 100628307 DIO2-AS1 - - HGNC:44153 14 - DIO2 antisense RNA 1 miscRNA DIO2-AS1 DIO2 antisense RNA 1 O - 20121230 -9606 100628314 LOC100628314 - - - 20 20p11.22 uncharacterized LOC100628314 unknown - - - - 20120622 -9606 100628315 DNM3OS - DNM3-AS1|MIR199A2HG HGNC:41228 1 1q24.3 DNM3 opposite strand/antisense RNA miscRNA DNM3OS DNM3 opposite strand/antisense RNA O - 20121230 -9606 100628560 MIR3155B - hsa-mir-3155b miRBase:MI0016839 10 - microRNA mir-3155b miscRNA - - - - 20121230 -9606 100629121 LOC100629121 - - - 15 15q13.2 endonuclease domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100630918 LOC100630918 - - - 2 - uncharacterized LOC100630918 miscRNA - - - - 20121230 -9606 100630919 LOC100630919 - - - 8 8p12 thymosin beta 4, X-linked pseudogene pseudo - - - - 20121230 -9606 100630920 LOC100630920 - - - 8 8p12 ribosomal protein L10 pseudogene pseudo - - - - 20121230 -9606 100630923 LOC100630923 - - - 7 7q22.1 LOC100289561-PRKRIP1 readthrough miscRNA - - - - 20121230 -9606 100631239 LOC100631239 - - - 9 - keratin 18 pseudogene pseudo - - - - 20121230 -9606 100631242 LOC100631242 - - - X - zinc finger protein 852 pseudogene pseudo - - - - 20121230 -9606 100631243 LOC100631243 - - - 2 - zinc finger protein 211 pseudogene pseudo - - - - 20121230 -9606 100631247 LOC100631247 - - - 2 - GRAM domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100631248 LOC100631248 - - - 14 - GRAM domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100631249 LOC100631249 - - - 15 - GRAM domain containing 4 pseudogene pseudo - - - - 20121209 -9606 100631250 LOC100631250 - - - 15 - GRAM domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100631251 LOC100631251 - - - 18 - GRAM domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100631252 LOC100631252 - - - 21 - GRAM domain containing 4 pseudogene pseudo - - - - 20121230 -9606 100631253 LOC100631253 - - - 17 - TBC1 domain family, member 3 pseudogene pseudo - - - - 20121230 -9606 100631254 LOC100631254 - - - 15 - chondroitin sulfate proteoglycan 4 pseudogene pseudo - - - - 20121209 -9606 100631255 LOC100631255 - - - 15 - arginine/serine-rich coiled-coil 2 pseudogene pseudo - - - - 20121230 -9606 100631258 LOC100631258 - - - 11 - isocitrate dehydrogenase 3 (NAD+) gamma pseudogene pseudo - - - - 20121230 -9606 100631260 MARK2P13 - - HGNC:39804 7 - MAP/microtubule affinity-regulating kinase 2 pseudogene 13 pseudo MARK2P13 MAP/microtubule affinity-regulating kinase 2 pseudogene 13 O - 20121230 -9606 100631261 MARK2P14 - - HGNC:44495 3 - MAP/microtubule affinity-regulating kinase 2 pseudogene 14 pseudo MARK2P14 MAP/microtubule affinity-regulating kinase 2 pseudogene 14 O - 20121230 -9606 100631265 LOC100631265 - - - 15 - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20121230 -9606 100631266 LOC100631266 - - - 15 - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20121209 -9606 100631267 LOC100631267 - - - 15 - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20121230 -9606 100631268 LOC100631268 - - - 15 - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20121230 -9606 100631269 LOC100631269 - - - 8 - solute carrier family 10 (sodium/bile acid cotransporter family), member 5 pseudogene pseudo - - - - 20121230 -9606 100631287 LOC100631287 - - - - - keratin 18 pseudogene pseudo - - - - 20120318 -9606 100631288 LOC100631288 - - - - - keratin 18 pseudogene pseudo - - - - 20120318 -9606 100631289 LOC100631289 - - - - - keratin 18 pseudogene pseudo - - - - 20120318 -9606 100631290 LOC100631290 - - - - - keratin 18 pseudogene pseudo - - - - 20120318 -9606 100631291 LOC100631291 - - - - - keratin 38 pseudogene pseudo - - - - 20120318 -9606 100631292 LOC100631292 - - - - - keratin 18 pseudogene pseudo - - - - 20120318 -9606 100631299 LOC100631299 - - - - - perilipin 2 pseudogene pseudo - - - - 20120318 -9606 100631300 LOC100631300 - - - - - tenascin XB pseudogene pseudo - - - - 20120318 -9606 100631301 LOC100631301 - - - - - tenascin XB pseudogene pseudo - - - - 20120318 -9606 100631302 LOC100631302 - - - - - tenascin XB pseudogene pseudo - - - - 20120318 -9606 100631309 LOC100631309 - - - - - proline rich 21 pseudogene pseudo - - - - 20120318 -9606 100631310 LOC100631310 - - - - - proline rich 21 pseudogene pseudo - - - - 20120318 -9606 100631311 LOC100631311 - - - - - Obg-like ATPase 1 pseudogene pseudo - - - - 20120318 -9606 100631318 LOC100631318 - - - - - zinc finger protein 85 pseudogene pseudo - - - - 20120318 -9606 100631319 LOC100631319 - - - - - zinc finger protein 273 pseudogene pseudo - - - - 20120318 -9606 100631320 LOC100631320 - - - - - zinc finger protein 486 pseudogene pseudo - - - - 20120318 -9606 100631321 LOC100631321 - - - - - zinc finger protein 100 pseudogene pseudo - - - - 20120318 -9606 100631322 LOC100631322 - - - - - MAM domain containing 2 pseudogene pseudo - - - - 20120318 -9606 100631323 LOC100631323 - - - - - fermitin family member 3 pseudogene pseudo - - - - 20120318 -9606 100631330 LOC100631330 - - - - - polycomb group ring finger 6 pseudogene pseudo - - - - 20120318 -9606 100631337 LOC100631337 - - - - - nitric oxide synthase trafficker pseudogene pseudo - - - - 20120318 -9606 100631343 LOC100631343 - - - - - diffuse panbronchiolitis critical region 1 pseudogene pseudo - - - - 20120318 -9606 100631344 LOC100631344 - - - - - diffuse panbronchiolitis critical region 1 pseudogene pseudo - - - - 20120318 -9606 100631345 LOC100631345 - - - - - diffuse panbronchiolitis critical region 1 pseudogene pseudo - - - - 20120318 -9606 100631346 LOC100631346 - - - - - diffuse panbronchiolitis critical region 1 pseudogene pseudo - - - - 20120318 -9606 100631354 LOC100631354 - - - - - SMAD specific E3 ubiquitin protein ligase 2 pseudogene pseudo - - - - 20120318 -9606 100631370 LOC100631370 - - - - - immunoglobulin superfamily, DCC subclass, member 3 pseudogene pseudo - - - - 20120318 -9606 100631371 LOC100631371 - - - - - cytochrome P450, family 2, subfamily D, polypeptide 6 pseudogene pseudo - - - - 20120318 -9606 100631372 LOC100631372 - - - - - ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene pseudo - - - - 20120318 -9606 100631373 LOC100631373 - - - - - ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene pseudo - - - - 20120318 -9606 100631374 LOC100631374 - - - - - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20120318 -9606 100631375 LOC100631375 - - - - - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20120318 -9606 100631376 LOC100631376 - - - - - sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) pseudogene pseudo - - - - 20120318 -9606 100631377 LOC100631377 - - - 1 1q25.1 uncharacterized LOC100631377 unknown - - - - 20120622 -9606 100631378 LOC100631378 - - - 19 19q13.13 uncharacterized 100631378 miscRNA - - - - 20121230 -9606 100631380 LOC100631380 - - - 18 18p11.2 protein phosphatase 6, regulatory subunit 2 pseudogene 1 pseudo - - - - 20121230 -9606 100631381 PPP6R2P1 - - HGNC:39605 21 21q11.2 protein phosphatase 6, regulatory subunit 2 pseudogene 1 pseudo PPP6R2P1 protein phosphatase 6, regulatory subunit 2 pseudogene 1 O - 20121230 -9606 100631382 ZFAND6P1 - - HGNC:42978 9 9p zinc finger, AN1-type domain 6 pseudogene 1 pseudo ZFAND6P1 zinc finger, AN1-type domain 6 pseudogene 1 O - 20121230 -9606 100631383 FAM47E-STBD1 - - Ensembl:ENSG00000189157|Vega:OTTHUMG00000160966 4 4q FAM47E-STBD1 readthrough protein-coding - - - uncharacterized protein LOC100631383 20121230 -9606 100642175 SPRY4-IT1 - - HGNC:42394 5 5q31.3 SPRY4 intronic transcript 1 (non-protein coding) miscRNA SPRY4-IT1 SPRY4 intronic transcript 1 (non-protein coding) O - 20120508 -9606 100642176 LINC00266-4P - NCRNA00266-4P|NCRNA00266D|NCRNA00266Y2 HGNC:38800 Y Yq11.23 long intergenic non-protein coding RNA 266-4, pseudogene pseudo LINC00266-4P long intergenic non-protein coding RNA 266-4, pseudogene O - 20121209 -9606 100652730 LINC00659 - - HGNC:44316 20 - long intergenic non-protein coding RNA 659 miscRNA LINC00659 long intergenic non-protein coding RNA 659 O - 20121230 -9606 100652732 LOC100652732 - - - 10 - coiled-coil and C2 domain-containing protein 2A-like protein-coding - - - - 20121209 -9606 100652736 LOC100652736 - - - 22 - uncharacterized LOC100652736 miscRNA - - - - 20121230 -9606 100652737 LOC100652737 - - - 17 - uncharacterized LOC100652737 pseudo - - - - 20121209 -9606 100652739 LOC100652739 - - - 6 - uncharacterized LOC100652739 miscRNA - - - - 20121230 -9606 100652740 LOC100652740 - - Ensembl:ENSG00000261359|Vega:OTTHUMG00000132405 16 - uncharacterized LOC100652740 protein-coding - - - - 20121209 -9606 100652741 LOC100652741 - - - 19 - protein capicua homolog protein-coding - - - - 20121209 -9606 100652743 LOC100652743 - - - 2 - ig kappa chain V-III region VH-like pseudogene pseudo - - - - 20121230 -9606 100652748 LOC100652748 - - - 10 - uncharacterized LOC100652748 miscRNA - - - - 20121209 -9606 100652749 LOC100652749 - - - 15 - uncharacterized LOC100652749 miscRNA - - - - 20121230 -9606 100652752 LOC100652752 - - - 16 - HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene pseudo - - - - 20121230 -9606 100652758 LOC100652758 - - - 5 - uncharacterized LOC100652758 protein-coding - - - - 20121230 -9606 100652759 PRICKLE2-AS1 - - HGNC:40916 3 - PRICKLE2 antisense RNA 1 miscRNA PRICKLE2-AS1 PRICKLE2 antisense RNA 1 O - 20121230 -9606 100652766 LOC100652766 - - Ensembl:ENSG00000151914|Vega:OTTHUMG00000014913 6 - dystonin-like protein-coding - - - - 20121209 -9606 100652768 LOC100652768 - - - 11 - uncharacterized LOC100652768 miscRNA - - - - 20121230 -9606 100652770 LOC100652770 - - - 18 - uncharacterized LOC100652770 miscRNA - - - - 20121230 -9606 100652772 LOC100652772 - - - 5 - uncharacterized LOC100652772 miscRNA - - - - 20121230 -9606 100652773 LOC100652773 - - - X|Y X;Y ribosomal protein L14 pseudogene pseudo - - - - 20121230 -9606 100652774 LOC100652774 - - - 2 - putative uncharacterized protein UNQ3029/PRO9830-like protein-coding - - - - 20121209 -9606 100652775 HP11026 - - - 2 - uncharacterized protein HP11026 protein-coding - - - - 20121230 -9606 100652776 LOC100652776 - - - 6 - uncharacterized LOC100652776 pseudo - - - - 20121209 -9606 100652777 LOC100652777 - - - 16 - group 10 secretory phospholipase A2-like protein-coding - - - - 20121209 -9606 100652778 LOC100652778 - - - 18 - uncharacterized LOC100652778 miscRNA - - - - 20121209 -9606 100652780 LOC100652780 - - - 2 - Ig heavy chain V-I region V35-like other - - - - 20121209 -9606 100652781 SNX29P1 - RUNDC2B|RUNDC2L HGNC:31913 16 16p12.2 sorting nexin 29 pseudogene 1 pseudo SNX29P1 sorting nexin 29 pseudogene 1 O - 20121230 -9606 100652782 LOC100652782 - - - 5 - uncharacterized LOC100652782 miscRNA - - - - 20121209 -9606 100652783 LOC100652783 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121209 -9606 100652791 LOC100652791 - - - 8 8p23.1 uncharacterized LOC100652791 miscRNA - - - - 20121230 -9606 100652792 LOC100652792 - - - 15 - ferritin, light polypeptide pseudogene pseudo - - - - 20121230 -9606 100652794 LOC100652794 - - - 6 - UMP-CMP kinase-like pseudo - - - - 20121209 -9606 100652796 LOC100652796 - - - 18 - bolA homolog 2B (E. coli) pseudogene pseudo - - - - 20121230 -9606 100652801 NXT1P1 - - HGNC:39708 13 - NTF2-like export factor 1 pseudogene 1 pseudo NXT1P1 NTF2-like export factor 1 pseudogene 1 O - 20121230 -9606 100652803 LOC100652803 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121209 -9606 100652807 LOC100652807 - - - 3 - putative uncharacterized protein C3orf53-like protein-coding - - - - 20121209 -9606 100652813 LOC100652813 - - - 18 - zinc finger protein 138 pseudogene pseudo - - - - 20121230 -9606 100652818 LOC100652818 - - - 16 - Ig heavy chain V-I region V35-like other - - - - 20121209 -9606 100652823 LOC100652823 - - - 18 - uncharacterized LOC100652823 miscRNA - - - - 20121209 -9606 100652824 LOC100652824 - - Ensembl:ENSG00000182329 2 - uncharacterized LOC100652824 protein-coding - - - - 20121230 -9606 100652831 NANOGNBP3 - - HGNC:42160 X - NANOGNB pseudogene 3 pseudo NANOGNBP3 NANOGNB pseudogene 3 O - 20121230 -9606 100652833 LOC100652833 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121209 -9606 100652834 LOC100652834 - - - 1 - uncharacterized LOC100652834 miscRNA - - - - 20121209 -9606 100652835 RBSG2 - - - 9 - retinoblastoma-specific gene 2 unknown - - - - 20121230 -9606 100652840 LOC100652840 - - - 15 - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) pseudogene pseudo - - - - 20121230 -9606 100652844 LOC100652844 - - - 5 - uncharacterized LOC100652844 pseudo - - - - 20121209 -9606 100652846 CACNA1C-AS1 - - HGNC:40119 12 - CACNA1C antisense RNA 1 miscRNA CACNA1C-AS1 CACNA1C antisense RNA 1 O - 20121230 -9606 100652853 HP07349 - - - 5 - uncharacterized LOC100652853 miscRNA - - - - 20121230 -9606 100652856 LOC100652856 - - - 13 - uncharacterized LOC100652856 miscRNA - - - - 20121230 -9606 100652857 TMCO5B - - HGNC:34243 15 15q13.3 transmembrane and coiled-coil domains 5B, pseudogene pseudo TMCO5B transmembrane and coiled-coil domains 5B, pseudogene O - 20121230 -9606 100652865 LINC00539 - - HGNC:43672 13 - long intergenic non-protein coding RNA 539 miscRNA LINC00539 long intergenic non-protein coding RNA 539 O - 20121230 -9606 100652869 LOC100652869 - - - 13 - uncharacterized LOC100652869 miscRNA - - - - 20121209 -9606 100652871 LOC100652871 - - - 22 - glutathione S-transferase theta-4-like protein-coding - - - - 20121209 -9606 100652883 ALOX15P1 - ALOX15P HGNC:13742 17 - arachidonate 15-lipoxygenase pseudogene 1 pseudo ALOX15P1 arachidonate 15-lipoxygenase pseudogene 1 O - 20121230 -9606 100652885 LOC100652885 - - - 20 - signal-regulatory protein beta-1-like pseudo - - - - 20121209 -9606 100652894 LOC100652894 - - - 22 - uncharacterized LOC100652894 protein-coding - - - - 20121230 -9606 100652897 LOC100652897 - - - 12 - density-regulated protein pseudogene pseudo - - - - 20121230 -9606 100652899 ANP32BP3 - - HGNC:44089 15 - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 3 pseudo ANP32BP3 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 3 O - 20121230 -9606 100652900 LOC100652900 - - - 9 - peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121209 -9606 100652901 LOC100652901 - - - 22 - uncharacterized LOC100652901 protein-coding - - - - 20121230 -9606 100652902 LOC100652902 - - - 20 - uncharacterized LOC100652902 pseudo - - - - 20121209 -9606 100652908 LOC100652908 - - - 1 - GRB2-related adaptor protein pseudogene pseudo - - - - 20121230 -9606 100652909 LOC100652909 - - - 19 - uncharacterized LOC100652909 miscRNA - - - - 20121230 -9606 100652911 LOC100652911 - - - 19 - uncharacterized LOC100652911 miscRNA - - - - 20121209 -9606 100652913 LOC100652913 - - - 9 - uncharacterized LOC100652913 miscRNA - - - - 20121230 -9606 100652918 LOC100652918 - - - 1 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo - - - - 20121230 -9606 100652925 LOC100652925 - - - 22 - uncharacterized LOC100652925 unknown - - - - 20120726 -9606 100652927 LOC100652927 - - - 17 - uncharacterized LOC100652927 miscRNA - - - - 20121209 -9606 100652928 LOC100652928 - - - 6 - glyceraldehyde-3-phosphate dehydrogenase-like pseudo - - - - 20121209 -9606 100652929 HP09025 hCG_1987623 - - 17 17q25.3 uncharacterized LOC100652929 miscRNA - - - - 20121230 -9606 100652930 LOC100652930 - - - 20 - uncharacterized LOC100652930 unknown - - - - 20121230 -9606 100652931 LOC100652931 - - - Y - RNA binding motif protein, Y-linked, family 1, member B pseudogene pseudo - - - - 20120726 -9606 100652933 IGANRP - - - 12 - uncharacterized LOC100652933 unknown - - - - 20121230 -9606 100652939 MTND2P28 - - HGNC:42129 1 - MT-ND2 pseudogene 28 pseudo MTND2P28 MT-ND2 pseudogene 28 O - 20121230 -9606 100652943 LOC100652943 - - - 19 - putative uncharacterized protein FLJ38264-like protein-coding - - - - 20121230 -9606 100652953 LOC100652953 - - - 6 - 60S ribosomal protein L30-like protein-coding - - - - 20121209 -9606 100652954 LOC100652954 - - - 15 - uncharacterized LOC100652954 miscRNA - - - - 20121209 -9606 100652955 LOC100652955 - - - 4 - COP9 signalosome complex subunit 3-like pseudo - - - - 20121209 -9606 100652960 LOC100652960 - - - 6 - SUZ RNA binding domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100652967 LOC100652967 - - - 1 - chromosome 14 open reading frame 2 pseudogene pseudo - - - - 20121230 -9606 100652969 LOC100652969 - - - 1 - putative uncharacterized protein encoded by LINC00269-like pseudo - - - - 20121209 -9606 100652972 LOC100652972 - - - 21 - uncharacterized LOC100652972 unknown - - - - 20121102 -9606 100652974 LOC100652974 - - - 16 - superoxide dismutase 1, soluble pseudogene pseudo - - - - 20121230 -9606 100652976 LOC100652976 - - - 11 - ankyrin repeat domain-containing protein 33B-like pseudo - - - - 20121209 -9606 100652981 LOC100652981 - - - 6 - putative uncharacterized protein encoded by LINC00269-like pseudo - - - - 20121209 -9606 100652982 LOC100652982 - - - 5 - uncharacterized LOC100652982 pseudo - - - - 20121209 -9606 100652985 LOC100652985 - - - 12 - uncharacterized LOC100652985 pseudo - - - - 20121209 -9606 100652988 LINC00702 - - HGNC:44676 10 - long intergenic non-protein coding RNA 702 miscRNA LINC00702 long intergenic non-protein coding RNA 702 O - 20121207 -9606 100652990 LOC100652990 - - - 7 - uncharacterized LOC100652990 pseudo - - - - 20121209 -9606 100652991 LOC100652991 - - - 2 - uncharacterized LOC100652991 miscRNA - - - - 20121209 -9606 100652994 LOC100652994 - - - 21 - uncharacterized LOC100652994 miscRNA - - - - 20121209 -9606 100652997 LINC00706 - - HGNC:44690 10 - long intergenic non-protein coding RNA 706 miscRNA LINC00706 long intergenic non-protein coding RNA 706 O - 20121207 -9606 100652999 LOC100652999 - - - 12 - uncharacterized LOC100652999 miscRNA - - - - 20121230 -9606 100653000 LOC100653000 - - - 12 - uncharacterized LOC100653000 miscRNA - - - - 20121209 -9606 100653005 LOC100653005 - - - 6 - uncharacterized LOC100653005 miscRNA - - - - 20121209 -9606 100653021 LOC100653021 - - - 14 - uncharacterized LOC100653021 miscRNA - - - - 20121209 -9606 100653022 PP12719 - - - 12 - uncharacterized LOC100653022 unknown - - - - 20121230 -9606 100653034 LOC100653034 - - - 6 - uncharacterized LOC100653034 protein-coding - - - - 20121102 -9606 100653039 LOC100653039 - - - 2 - Ig heavy chain V-III region VH26-like other - - - - 20121209 -9606 100653044 LOC100653044 - - - 19 - protein LSM14 homolog A-like pseudo - - - - 20121102 -9606 100653046 LOC100653046 - - - 4 - double homeobox protein 4-like pseudo - - - - 20121102 -9606 100653047 LOC100653047 - - - 4 - 60S ribosomal protein L23a-like pseudo - - - - 20121102 -9606 100653048 LOC100653048 - - - 19 - killer cell immunoglobulin-like receptor 2DL5A-like pseudo - - - - 20121102 -9606 100653049 LOC100653049 - - - 17 - keratin, type I cuticular Ha4-like protein-coding - - - - 20121102 -9606 100653050 LOC100653050 - - - 19 - killer cell immunoglobulin-like receptor 2DL2-like protein-coding - - - - 20121120 -9606 100653052 LOC100653052 - - - 19 - putative killer cell immunoglobulin-like receptor like protein KIR3DP1-like protein-coding - - - - 20121102 -9606 100653053 TAS2R68P - PS7|T2R68P HGNC:43905 12 - taste receptor, type 2, member 68 pseudogene pseudo TAS2R68P taste receptor, type 2, member 68 pseudogene O - 20121230 -9606 100653055 LOC100653055 - - - 13 - 60S ribosomal protein L23a-like pseudo - - - - 20121102 -9606 100653056 LOC100653056 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121102 -9606 100653057 LOC100653057 - - - 16 - liver carboxylesterase 1-like protein-coding - - - - 20121110 -9606 100653058 LOC100653058 - - - 5 - putative POM121-like protein 1-like protein-coding - - - - 20121102 -9606 100653059 LOC100653059 - - - 5 - putative POM121-like protein 1-like protein-coding - - - - 20121120 -9606 100653060 LOC100653060 - - - 5 - putative POM121-like protein 1-like protein-coding - - - - 20121102 -9606 100653061 LOC100653061 - - - 5 - beta-glucuronidase-like protein SMA4-like protein-coding - - - - 20121120 -9606 100653065 LOC100653065 - - - 5 - uncharacterized LOC100653065 pseudo - - - - 20121102 -9606 100653066 LOC100653066 - - - 19 - killer cell immunoglobulin-like receptor 3DL1-like pseudo - - - - 20121102 -9606 100653067 LOC100653067 - - - 19 - putative killer cell immunoglobulin-like receptor like protein KIR3DP1-like protein-coding - - - - 20121102 -9606 100653068 LOC100653068 - - - 19 - putative killer cell immunoglobulin-like receptor like protein KIR3DP1-like protein-coding - - - - 20121102 -9606 100653071 LOC100653071 - - - 3 - cartilage-associated protein-like protein-coding - - - - 20121102 -9606 100653084 LOC100653084 - - - 14 - Ig heavy chain V-III region VH26-like other - - - - 20121102 -9606 100653086 LOC100653086 - - - 6 - uncharacterized LOC100653086 miscRNA - - - - 20121102 -9606 100653091 LOC100653091 - - - 9 - uncharacterized LOC100653091 pseudo - - - - 20121209 -9606 100653104 LOC100653104 - - - 6 - putative uncharacterized protein encoded by LINC00269-like pseudo - - - - 20121102 -9606 100653113 LOC100653113 - - - Un - uncharacterized LOC100653113 protein-coding - - - - 20121222 -9606 100653133 LOC100653133 - - - 15 - U3 small nucleolar ribonucleoprotein protein MPP10-like pseudo - - - - 20121102 -9606 100653137 LOC100653137 - - - 10 - cadherin-23-like protein-coding - - - - 20121120 -9606 100653149 LOC100653149 - - - 22 - uncharacterized LOC100653149 miscRNA - - - - 20121102 -9606 100653162 LOC100653162 - - - 2 - rho-related GTP-binding protein RhoQ-like pseudo - - - - 20121102 -9606 100653165 LOC100653165 - - - Un - double homeobox protein 4-like protein 2-like pseudo - - - - 20121102 -9606 100653166 LOC100653166 - - - Un - uncharacterized LOC100653166 miscRNA - - - - 20121102 -9606 100653184 LOC100653184 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100653190 LOC100653190 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100653194 LOC100653194 - - - 20 - signal-regulatory protein beta-1 isoform 3-like protein-coding - - - - 20121102 -9606 100653200 LOC100653200 - - - 11 - putative uncharacterized protein FLJ38264-like pseudo - - - - 20121102 -9606 100653206 LOC100653206 - - - 9 - uncharacterized LOC100653206 miscRNA - - - - 20121209 -9606 100653217 LOC100653217 - - - 11 - neurotrimin-like protein-coding - - - - 20121110 -9606 100653225 LOC100653225 - - - Un - ovostatin homolog 2-like protein-coding - - - - 20121102 -9606 100653231 LOC100653231 - - - 20 - signal-regulatory protein beta-1-like protein-coding - - - - 20121102 -9606 100653233 LOC100653233 - - - 7 - uncharacterized LOC100653233 miscRNA - - - - 20121102 -9606 100653243 LOC100653243 - - - 15 - uncharacterized LOC100653243 protein-coding - - - putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8-like 20121222 -9606 100653245 LOC100653245 - - - Un - Ig heavy chain V-III region VH26-like other - - - - 20121102 -9606 100653247 LOC100653247 - - - 6 - dual specificity protein phosphatase 22-like protein-coding - - - - 20121102 -9606 100653251 LOC100653251 - - - Un - ankyrin repeat domain-containing protein SOWAHC-like protein-coding - - - - 20121102 -9606 100653274 LOC100653274 - - - Y - testis-specific chromodomain protein Y 1-like pseudo - - - - 20121102 -9606 100653275 LOC100653275 - - - 11 - uncharacterized LOC100653275 miscRNA - - - - 20121102 -9606 100653282 LOC100653282 - - - Y - uncharacterized LOC100653282 pseudo - - - - 20121102 -9606 100653284 LOC100653284 - - - 9 - uncharacterized LOC100653284 pseudo - - - - 20121102 -9606 100653292 LOC100653292 - - - Un - putative HERC2-like protein 3-like protein-coding - - - - 20121102 -9606 100653295 LOC100653295 - - - Y - uncharacterized LOC100653295 pseudo - - - - 20121102 -9606 100653296 LOC100653296 - - - 12 - uncharacterized LOC100653296 pseudo - - - - 20121102 -9606 100653309 LOC100653309 - - - 22 - uncharacterized LOC100653309 miscRNA - - - - 20121102 -9606 100653334 LOC100653334 - - - 2 - COBW domain-containing protein 1-like protein-coding - - - - 20121102 -9606 100653336 LOC100653336 - - - 2 - uncharacterized LOC100653336 miscRNA - - - - 20121102 -9606 100653348 LOC100653348 - - - 7 - uncharacterized LOC100653348 miscRNA - - - - 20121102 -9606 100653358 LOC100653358 - - - 7 - putative uncharacterized protein C20orf69-like protein-coding - - - - 20121102 -9606 100653365 BED - - MIM:300843 X Xq28 Bornholm eye disease unknown - - - - 20120622 -9606 100653366 PSC - - MIM:613806 3 3p21 Cholangitis, primary sclerosing unknown - - - - 20120622 -9606 100653367 OFC13 - - MIM:613857 1 1p33 Orofacial cleft 13 unknown - - - - 20120622 -9606 100653368 SCA32 - - HGNC:37475|MIM:613909 7 7q32-q33 spinocerebellar ataxia 32 unknown SCA32 spinocerebellar ataxia 32 O - 20120622 -9606 100653369 APMR3 - - MIM:613930 18 18q11.2-q12.2 Alopecia-mental retardation syndrome 3 unknown - - - - 20120622 -9606 100653370 MYP19 - - MIM:613969 5 5p15.1-p13.3 Myopia 19, autosomal dominant unknown - - - - 20120622 -9606 100653371 CPVT3 - - MIM:614021 7 7p22-p14 Ventricular tachycardia, catecholaminergic polymorphic, 3 unknown - - - - 20120622 -9606 100653372 SRXX3 - - MIM:300833 X Xq26.3 46XX sex reversal 3 unknown - - - - 20120622 -9606 100653373 KONDS - - MIM:606242 1 1p36.32-p35.3 Kondoh syndrome unknown - - - - 20120622 -9606 100653374 DEL17P13.1 - C17DELp13.1 MIM:613776 17 17p13.1 Chromosome 17p13.1 deletion syndrome unknown - - - - 20120622 -9606 100653375 ADIPQTL5 - - MIM:613836 16 16q23.3 Adiponectin, serum level of, QTL5 unknown - - - - 20120622 -9606 100653376 DFNB89 - - HGNC:37648|MIM:613916 16 16q21-q23.2 deafness, autosomal recessive 89 unknown DFNB89 deafness, autosomal recessive 89 O - 20120622 -9606 100653377 ASG - - MIM:108420 1 - Spermatogenic failure unknown - - - - 20120622 -9606 100653378 SRXX2 - DEL17q24.3|DUP17q24.3 MIM:278850 17 17q24.3-q25.1 46XX sex reversal 2 unknown - - - - 20120622 -9606 100653379 MYMY4 - CXDELq38 MIM:300845 X Xq28 Moyamoya disease 4 unknown - - - - 20120622 -9606 100653380 DEL7Q11.23 - C7DELq11.23 MIM:613729 7 7q11.23 Chromosome 7q11.23 deletion syndrome, distal, 1.2Mb unknown - - - - 20120902 -9606 100653381 GEFSP8 - - MIM:613828 6 6q16.3-q22.31 Generalized epilepsy with febrile seizures plus, type 8 unknown - - - - 20120622 -9606 100653382 DEL13Q14 - C13DELq14 MIM:613884 13 13q14 Chromosome 13q14 deletion syndrome unknown - - - - 20120622 -9606 100653383 PSMNSW - - MIM:613938 20 20q12-q13.12 Parasomnia, sleepwalking type unknown - - - - 20120622 -9606 100653384 IGAN2 - - MIM:613944 2 2q36 IgA nephropathy, susceptibility to, 2 unknown - - - - 20120622 -9606 100653385 DEL3PTERP25 - C3DELpterp25 MIM:613792 3 3pter-p25 3p- syndrome unknown - - - - 20120622 -9606 100653390 DFNB81 - - HGNC:35420|MIM:614129 19 19p13 deafness, autosomal recessive 81 unknown DFNB81 deafness, autosomal recessive 81 O - 20120622 -9606 100653393 CACD3 - - MIM:613144 - - Choroidal dystrophy, central areolar 3 unknown - - - - 20120622 -9606 100653395 LOC100653395 - - - 3 3q13.2 methionine adenosyltransferase II, alpha pseudogene pseudo - - - - 20121230 -9606 100653396 LOC100653396 - - - 12 - yippee-like 5 (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100653397 NAMA - - HGNC:42408 9 9q22.33 non-protein coding RNA, associated with MAP kinase pathway and growth arrest miscRNA NAMA non-protein coding RNA, associated with MAP kinase pathway and growth arrest O - 20120608 -9606 100653423 BANF1P4 - - HGNC:43884 1 - barrier to autointegration factor 1 pseudogene 4 pseudo BANF1P4 barrier to autointegration factor 1 pseudogene 4 O - 20121230 -9606 100653489 MTND4P14 - - HGNC:42201 9 9p24.1 MT-ND4 pseudogene 14 pseudo MTND4P14 MT-ND4 pseudogene 14 O - 20121230 -9606 100653515 LOC100653515 - - Ensembl:ENSG00000178404|Vega:OTTHUMG00000177628 17 17q25 differential display clone 8 protein-coding - - - - 20121230 -9606 100682260 HPPD - - MIM:614187 14 14q31 Hypertelorism, preauricular sinus, punctal pits, and deafness unknown - - - - 20120622 -9606 100682325 NDNC9 - - MIM:614149 17 17q25.1-q25.3 Nail disorder, nonsyndromic congenital, 9 unknown - - - - 20120622 -9606 100682326 MYP20 - - MIM:614166 13 13q12.12 Myopia 20, autosomal dominant unknown - - - - 20120622 -9606 100682395 LNCR5 - - MIM:614210 3 3q28 Lung cancer susceptibility 5 unknown - - - - 20120622 -9606 100689013 MRT17 - MRT21 MIM:614207 11 11p15 Mental retardation, autosomal recessive 17 unknown - - - - 20120622 -9606 100689014 MRT16 - - MIM:614208 9 9p23-p13.3 Mental retardation, autosomal recessive 16 unknown - - - - 20120622 -9606 100689073 ARHGAP22-IT1 - - HGNC:42944 10 10q11.22 ARHGAP22 intronic transcript 1 (non-protein coding) miscRNA ARHGAP22-IT1 ARHGAP22 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100689074 POU6F2-AS2 - - HGNC:21887 7 7p14.1 POU6F2 antisense RNA 2 miscRNA POU6F2-AS2 POU6F2 antisense RNA 2 O - 20121021 -9606 100689211 HYSP3 - - MIM:146450 7 7q32.2-q36.1 Hypospadias 3, autosomal unknown - - - - 20120622 -9606 100689212 PBC5 - - MIM:614221 17 17q12 Biliary cirrhosis, primary, 5 unknown - - - - 20120622 -9606 100689213 GFND1 - - MIM:137950 1 1q32 Glomerulopathy with fibronectin deposits 1 unknown - - - - 20120622 -9606 100689214 HYSP4 - - MIM:300856 X Xp11.22 Hypospadias 4, X-linked, susceptibilty to unknown - - - - 20120622 -9606 100689215 PBC4 - - MIM:614220 7 7q32 Biliary cirrhosis, primary, 4 unknown - - - - 20120622 -9606 100689216 NRCLP6 - - MIM:614223 19 19p13.2 Narcolepsy 6 unknown - - - - 20120622 -9606 100689229 H3F3AP3 - p18 HGNC:42873 3 3q13.13 H3 histone, family 3A pseudogene 3 pseudo H3F3AP3 H3 histone, family 3A pseudogene 3 O - 20121230 -9606 100689296 CNN2P11 - - HGNC:39536 2 - calponin 2 pseudogene 11 pseudo CNN2P11 calponin 2 pseudogene 11 O - 20121230 -9606 100689490 HNFJ3 - - MIM:614227 2 2p22.1-p21 Hyperuricemic nephropathy, familial juvenile, 3 unknown - - - - 20120622 -9606 100689491 DEL8Q21.11 - C8DELq21.11 MIM:614230 8 8q21.11 Chromosome 8q21.11 deletion syndrome unknown - - - - 20120622 -9606 100736250 HYPT9 - - MIM:614237 10 10q11.23-q22.3 Hypotrichosis 9 unknown - - - - 20120622 -9606 100736251 HYP10 - - MIM:614238 7 7p22.3-p21.3 Hypotrichosis 10 unknown - - - - 20120622 -9606 100736408 LOC100736408 - - - 22 - NAD kinase domain containing 1 pseudogene pseudo - - - - 20121230 -9606 100736411 LOC100736411 - - - 22 - ash2 (absent, small, or homeotic)-like (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100736412 LOC100736412 - - - 22 - ash2 (absent, small, or homeotic)-like (Drosophila) pseudogene pseudo - - - - 20121230 -9606 100739996 MRXS17 - - MIM:300858 X Xp21.1-p11.23 Mental retardation, X-linked, syndromic 17 unknown - - - - 20120622 -9606 100750225 PCAT1 - PCAT-1 HGNC:43022 8 8q24.21 prostate cancer associated transcript 1 (non-protein coding) miscRNA PCAT1 prostate cancer associated transcript 1 (non-protein coding) O - 20121230 -9606 100750238 EJM9 - - MIM:614280 2 2q33-q36 Epilepsy, juvenile myoclonic, susceptiblity to, 9 unknown - - - - 20120622 -9606 100750245 SNAPC5P1 - - HGNC:38667 6 - small nuclear RNA activating complex, polypeptide 5, 19kDa pseudogene 1 pseudo SNAPC5P1 small nuclear RNA activating complex, polypeptide 5, 19kDa pseudogene 1 O - 20121230 -9606 100750246 HIF1A-AS1 - 5'aHIF-1A HGNC:43014|MIM:614528 14 14q23.2 HIF1A antisense RNA 1 miscRNA HIF1A-AS1 HIF1A antisense RNA 1 O - 20121117 -9606 100750247 HIF1A-AS2 - 3'aHIF-1A|aHIF HGNC:43015|MIM:614529 14 14q23.2 HIF1A antisense RNA 2 miscRNA HIF1A-AS2 HIF1A antisense RNA 2 O - 20121230 -9606 100750325 RCAN3AS - - HGNC:39009 1 1p36.11 RCAN3 antisense miscRNA RCAN3AS RCAN3 antisense O - 20121230 -9606 100750326 HTT-AS1 - HTTAS HGNC:37118 4 4p16.3 HTT antisense RNA 1 (head to head) miscRNA HTT-AS1 HTT antisense RNA 1 (head to head) O - 20121230 -9606 100750328 ANIB11 - - MIM:614252 8 8p22 Aneurysm, intracranial berry, 11 unknown - - - - 20120622 -9606 100750329 TET18P - - MIM:614290 18 18p Tetrasomy 18p unknown - - - - 20120622 -9606 100750330 SCA34 - - HGNC:37503|MIM:133190 6 6q12.3-q16.2 spinocerebellar ataxia 34 unknown SCA34 spinocerebellar ataxia 34 O - 20120622 -9606 100775104 KLHL7-AS1 - PLATAK HGNC:43431 7 7p15.3 KLHL7 antisense RNA 1 (head to head) miscRNA KLHL7-AS1 KLHL7 antisense RNA 1 (head to head) O - 20121230 -9606 100775105 ERVK-18 - HERV-K18|c1_C|env HGNC:39025 1 1q23.3 endogenous retrovirus group K, member 18 unknown ERVK-18 endogenous retrovirus group K, member 18 O - 20121017 -9606 100775107 LUST - - - 3 3p21.3 RBM5 antisense RNA miscRNA - - - - 20121230 -9606 100820631 MLSM7 - C7DELq|DEL7q MIM:252270 7 7q Myelodysplasia and leukemia syndrome with monosomy 7 unknown - - - - 20120622 -9606 100820632 DEL15Q25 - C15DELq25 MIM:614294 15 15q25 Chromosome 15q25 deletion syndrome unknown - - - - 20120622 -9606 100820633 DEL2Q23.1 - C2DELq23.1 MIM:156200 2 2q23.1 Chromosome 2q23.1 deletion syndrome unknown - - - - 20120622 -9606 100820709 LINC00501 - - HGNC:43439 3 3q26.32 long intergenic non-protein coding RNA 501 miscRNA LINC00501 long intergenic non-protein coding RNA 501 O - 20121021 -9606 100820732 LOC100820732 - - - 9 9p22.2 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100820733 LOC100820733 - - - 5 5q21 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100820734 LOC100820734 - - - 19 19p13.1 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo - - - - 20121230 -9606 100820735 HIST1H2BPS3 - - HGNC:42633 13 - histone cluster 1, H2b, pseudogene 3 pseudo HIST1H2BPS3 histone cluster 1, H2b, pseudogene 3 O - 20121230 -9606 100820741 RBBP4P6 - - HGNC:42373 5 - retinoblastoma binding protein 4 pseudogene 6 pseudo RBBP4P6 retinoblastoma binding protein 4 pseudogene 6 O - 20121230 -9606 100820757 VUR4 - - MIM:614317 5 5q14.2 Vesicoureteral reflux 4 unknown - - - - 20120622 -9606 100820758 CCCSX - - MIM:300864 X - Cerebral-cerebellar-coloboma syndrome, X-linked unknown - - - - 20120622 -9606 100820759 SPGFX2 - - MIM:309120 X - Spermatogenic failure, X-linked, 2 unknown - - - - 20120622 -9606 100820760 VUR5 - - MIM:614318 13 13q33.2 Vesicoureteral reflux 5 unknown - - - - 20120622 -9606 100820761 MRXSCS - - MIM:300861 X Xq21.33-q23 Mental retardation, X-linked, syndromic, Chudley-Schwartz type unknown - - - - 20120622 -9606 100820762 CPBHM - - MIM:300863 X - Chondrodysplasia with platyspondyly, distinctive brachydactyly, hydrocephaly, and microphthalmia unknown - - - - 20120622 -9606 100820763 VUR6 - - MIM:614319 18 18q12.3 Vesicoureteral reflux 6 unknown - - - - 20120622 -9606 100820764 SCAR12 - - MIM:614322 16 16q21-q23 Spinocerebellar ataxia, autosomal recessive 12 unknown - - - - 20120622 -9606 100820829 MYZAP - GCOM1|Gup|Gup1|Gup2|MYOZAP HGNC:43444|MIM:614071|Ensembl:ENSG00000137878|Ensembl:ENSG00000263155|Vega:OTTHUMG00000132453|Vega:OTTHUMG00000176411 15 15q21.3 myocardial zonula adherens protein protein-coding MYZAP myocardial zonula adherens protein O GRINL1A upstream protein|myocardial intercalated disc protein|myocardium-enriched Zo-associated protein|myocardium-enriched zonula adherens protein|myocardium-enriched zonula occludens-1-associated protein 20121230 -9606 100846978 LINC00506 - - HGNC:43557 3 3p12.1 long intergenic non-protein coding RNA 506 miscRNA LINC00506 long intergenic non-protein coding RNA 506 O - 20120508 -9606 100846991 MIR5197 - - HGNC:43450|miRBase:MI0018176 5 - microRNA 5197 miscRNA MIR5197 microRNA 5197 O - 20121230 -9606 100846992 MIR548AW - - HGNC:43454|miRBase:MI0019283 9 - microRNA 548aw miscRNA MIR548AW microRNA 548aw O - 20121230 -9606 100846993 MIR5009 - - HGNC:43458|miRBase:MI0017877 15 - microRNA 5009 miscRNA MIR5009 microRNA 5009 O - 20121230 -9606 100846994 MIR3670-2 - - HGNC:43460|miRBase:MI0019112 16 - microRNA 3670-2 miscRNA MIR3670-2 microRNA 3670-2 O - 20121222 -9606 100846995 MIR5000 - - HGNC:43464|miRBase:MI0017866 2 - microRNA 5000 miscRNA MIR5000 microRNA 5000 O - 20121230 -9606 100846996 MIR5007 - - HGNC:43468|miRBase:MI0017874 13 - microRNA 5007 miscRNA MIR5007 microRNA 5007 O - 20121230 -9606 100846997 MIR5583-2 - - HGNC:43471|miRBase:MI0019140 18 - microRNA 5583-2 miscRNA MIR5583-2 microRNA 5583-2 O - 20121230 -9606 100846998 MIR5689 - - HGNC:43479|miRBase:MI0019294 6 - microRNA 5689 miscRNA MIR5689 microRNA 5689 O - 20121230 -9606 100846999 MIR4444-2 - - HGNC:43481|miRBase:MI0019111 3 - microRNA 4444-2 miscRNA MIR4444-2 microRNA 4444-2 O - 20120522 -9606 100847000 MIR5579 - - HGNC:43485|miRBase:MI0019133 11 - microRNA 5579 miscRNA MIR5579 microRNA 5579 O - 20121230 -9606 100847001 MIR5680 - - HGNC:43492|miRBase:MI0019280 8 - microRNA 5680 miscRNA MIR5680 microRNA 5680 O - 20121230 -9606 100847002 MIR5011 - - HGNC:43496|miRBase:MI0017879 18 - microRNA 5011 miscRNA MIR5011 microRNA 5011 O - 20121230 -9606 100847003 MIR5693 - - HGNC:43499|miRBase:MI0019300 13 - microRNA 5693 miscRNA MIR5693 microRNA 5693 O - 20121230 -9606 100847004 MIR5188 - - HGNC:43502|miRBase:MI0018167 12 - microRNA 5188 miscRNA MIR5188 microRNA 5188 O - 20121230 -9606 100847005 MIR5701-2 - - HGNC:43510|miRBase:MI0019593 15 - microRNA 5701-2 miscRNA MIR5701-2 microRNA 5701-2 O - 20121230 -9606 100847006 MIR5571 - - HGNC:43513|miRBase:MI0019115 22 - microRNA 5571 miscRNA MIR5571 microRNA 5571 O - 20120522 -9606 100847007 MIR5696 - - HGNC:43516|miRBase:MI0019303 2 - microRNA 5696 miscRNA MIR5696 microRNA 5696 O - 20121230 -9606 100847008 MIR4524B - - HGNC:43520|miRBase:MI0019114 17 - microRNA 4524b miscRNA MIR4524B microRNA 4524b O - 20121230 -9606 100847009 MIR1295B - - HGNC:43524|miRBase:MI0019146 1 - microRNA 1295b miscRNA MIR1295B microRNA 1295b O - 20121230 -9606 100847010 MIR5581 - - HGNC:43527|miRBase:MI0019136 1 - microRNA 5581 miscRNA MIR5581 microRNA 5581 O - 20121230 -9606 100847011 MIR5686 - - HGNC:43529|miRBase:MI0019290 10 - microRNA 5686 miscRNA MIR5686 microRNA 5686 O - 20120522 -9606 100847012 MIR5004 - - HGNC:43532|miRBase:MI0017870 6 - microRNA 5004 miscRNA MIR5004 microRNA 5004 O - 20121230 -9606 100847013 MIR5692B - - HGNC:43535|miRBase:MI0019311 21 - microRNA 5692b miscRNA MIR5692B microRNA 5692b O - 20121230 -9606 100847014 MIR5100 - - HGNC:43540|miRBase:MI0019116 10 - microRNA 5100 miscRNA MIR5100 microRNA 5100 O - 20121230 -9606 100847015 MIR5691 - - HGNC:43545|miRBase:MI0019296 11 - microRNA 5691 miscRNA MIR5691 microRNA 5691 O - 20121230 -9606 100847016 MIR5695 - - HGNC:43548|miRBase:MI0019302 19 - microRNA 5695 miscRNA MIR5695 microRNA 5695 O - 20121230 -9606 100847017 MIR5692C2 - - HGNC:43448|miRBase:MI0019289 7 - microRNA 5692c-2 miscRNA MIR5692C2 microRNA 5692c-2 O - 20121230 -9606 100847018 MIR5585 - - HGNC:43452|miRBase:MI0019142 1 - microRNA 5585 miscRNA MIR5585 microRNA 5585 O - 20121230 -9606 100847019 MIR5687 - - HGNC:43457|miRBase:MI0019291 5 - microRNA 5687 miscRNA MIR5687 microRNA 5687 O - 20121230 -9606 100847020 MIR5582 - - HGNC:43461|miRBase:MI0019138 11 - microRNA 5582 miscRNA MIR5582 microRNA 5582 O - 20121230 -9606 100847021 MIR5002 - - HGNC:43470|miRBase:MI0017868 3 - microRNA 5002 miscRNA MIR5002 microRNA 5002 O - 20121230 -9606 100847022 MIR5093 - - HGNC:43474|miRBase:MI0017982 16 - microRNA 5093 miscRNA MIR5093 microRNA 5093 O - 20121230 -9606 100847023 MIR5091 - - HGNC:43478|miRBase:MI0017980 4 - microRNA 5091 miscRNA MIR5091 microRNA 5091 O - 20121230 -9606 100847024 MIR5698 - - HGNC:43487|miRBase:MI0019305 1 - microRNA 5698 miscRNA MIR5698 microRNA 5698 O - 20121230 -9606 100847025 MIR5583-1 - - HGNC:43491|miRBase:MI0019139 18 - microRNA 5583-1 miscRNA MIR5583-1 microRNA 5583-1 O - 20121230 -9606 100847026 MIR5006 - - HGNC:43495|miRBase:MI0017873 13 - microRNA 5006 miscRNA MIR5006 microRNA 5006 O - 20121230 -9606 100847027 MIR5705 - - HGNC:43504|miRBase:MI0019313 4 - microRNA 5705 miscRNA MIR5705 microRNA 5705 O - 20121230 -9606 100847028 MIR5587 - - HGNC:43508|miRBase:MI0019144 16 - microRNA 5587 miscRNA MIR5587 microRNA 5587 O - 20121230 -9606 100847029 MIR5003 - - HGNC:43512|miRBase:MI0017869 5 - microRNA 5003 miscRNA MIR5003 microRNA 5003 O - 20121230 -9606 100847030 MIR548AT - - HGNC:43517|miRBase:MI0019137 17 - microRNA 548at miscRNA MIR548AT microRNA 548at O - 20121230 -9606 100847031 MIR5700 - - HGNC:43521|miRBase:MI0019307 12 - microRNA 5700 miscRNA MIR5700 microRNA 5700 O - 20121230 -9606 100847032 MIR5707 - - HGNC:43449|miRBase:MI0019315 7 - microRNA 5707 miscRNA MIR5707 microRNA 5707 O - 20121230 -9606 100847033 MIR4436B2 - - HGNC:43451|miRBase:MI0019110 2 - microRNA 4436b-2 miscRNA MIR4436B2 microRNA 4436b-2 O - 20121230 -9606 100847034 MIR5683 - - HGNC:43453|miRBase:MI0019284 6 - microRNA 5683 miscRNA MIR5683 microRNA 5683 O - 20121230 -9606 100847035 MIR548AR - - HGNC:43455|miRBase:MI0019131 13 - microRNA 548ar miscRNA MIR548AR microRNA 548ar O - 20121230 -9606 100847036 MIR5186 - - HGNC:43459|miRBase:MI0018165 3 - microRNA 5186 miscRNA MIR5186 microRNA 5186 O - 20121230 -9606 100847037 MIR5001 - - HGNC:43462|miRBase:MI0017867 2 - microRNA 5001 miscRNA MIR5001 microRNA 5001 O - 20121230 -9606 100847038 MIR5692A2 - - HGNC:43466|miRBase:MI0019298 8 - microRNA 5692a-2 miscRNA MIR5692A2 microRNA 5692a-2 O - 20121230 -9606 100847039 MIR5092 - - HGNC:43467|miRBase:MI0017981 3 - microRNA 5092 miscRNA MIR5092 microRNA 5092 O - 20121230 -9606 100847040 MIR5704 - - HGNC:43469|miRBase:MI0019312 3 - microRNA 5704 miscRNA MIR5704 microRNA 5704 O - 20121230 -9606 100847041 MIR3680-2 - - HGNC:43472|miRBase:MI0019113 16 - microRNA 3680-2 miscRNA MIR3680-2 microRNA 3680-2 O - 20121230 -9606 100847042 MIR5572 - - HGNC:43476|miRBase:MI0019117 15 - microRNA 5572 miscRNA MIR5572 microRNA 5572 O - 20120522 -9606 100847043 MIR5682 - - HGNC:43477|miRBase:MI0019282 3 - microRNA 5682 miscRNA MIR5682 microRNA 5682 O - 20121230 -9606 100847044 MIR5087 - - HGNC:43480|miRBase:MI0017976 1 - microRNA 5087 miscRNA MIR5087 microRNA 5087 O - 20121230 -9606 100847045 MIR548AU - - HGNC:43483|miRBase:MI0019145 9 - microRNA 548au miscRNA MIR548AU microRNA 548au O - 20121230 -9606 100847046 MIR5010 - - HGNC:43484|miRBase:MI0017878 17 - microRNA 5010 miscRNA MIR5010 microRNA 5010 O - 20121230 -9606 100847047 MIR4666B - - HGNC:43486|miRBase:MI0019299 X - microRNA 4666b miscRNA MIR4666B microRNA 4666b O - 20121230 -9606 100847048 MIR5690 - - HGNC:43490|miRBase:MI0019295 6 - microRNA 5690 miscRNA MIR5690 microRNA 5690 O - 20121230 -9606 100847049 MIR4999 - - HGNC:43494|miRBase:MI0017865 19 - microRNA 4999 miscRNA MIR4999 microRNA 4999 O - 20121230 -9606 100847050 MIR5191 - - HGNC:43497|miRBase:MI0018170 1 - microRNA 5191 miscRNA MIR5191 microRNA 5191 O - 20121230 -9606 100847051 MIR5194 - - HGNC:43498|miRBase:MI0018173 8 - microRNA 5194 miscRNA MIR5194 microRNA 5194 O - 20121230 -9606 100847052 MIR644B - - HGNC:43501|miRBase:MI0019134 X - microRNA 644b miscRNA MIR644B microRNA 644b O - 20121230 -9606 100847053 MIR5702 - - HGNC:43503|miRBase:MI0019309 2 - microRNA 5702 miscRNA MIR5702 microRNA 5702 O - 20121230 -9606 100847054 MIR5588 - - HGNC:43505|miRBase:MI0019147 3 - microRNA 5588 miscRNA MIR5588 microRNA 5588 O - 20120522 -9606 100847055 MIR5697 - - HGNC:43509|miRBase:MI0019304 1 - microRNA 5697 miscRNA MIR5697 microRNA 5697 O - 20121230 -9606 100847056 MIR5708 - - HGNC:43511|miRBase:MI0019316 8 - microRNA 5708 miscRNA MIR5708 microRNA 5708 O - 20121230 -9606 100847057 MIR5189 - - HGNC:43515|miRBase:MI0018168 16 - microRNA 5189 miscRNA MIR5189 microRNA 5189 O - 20121230 -9606 100847058 MIR5681A - - HGNC:43518|miRBase:MI0019281 8 - microRNA 5681a miscRNA MIR5681A microRNA 5681a O - 20121222 -9606 100847059 MIR5094 - - HGNC:43519|miRBase:MI0017983 15 - microRNA 5094 miscRNA MIR5094 microRNA 5094 O - 20121230 -9606 100847060 MIR5701-1 - - HGNC:43522|miRBase:MI0019308 15 - microRNA 5701-1 miscRNA MIR5701-1 microRNA 5701-1 O - 20121230 -9606 100847061 MIR4536-2 - - HGNC:43525|miRBase:MI0019149 X - microRNA 4536-2 miscRNA MIR4536-2 microRNA 4536-2 O - 20120522 -9606 100847062 MIR5195 - - HGNC:43526|miRBase:MI0018174 14 - microRNA 5195 miscRNA MIR5195 microRNA 5195 O - 20120522 -9606 100847063 MIR548AX - - HGNC:43528|miRBase:MI0019286 X - microRNA 548ax miscRNA MIR548AX microRNA 548ax O - 20121230 -9606 100847064 MIR5694 - - HGNC:43530|miRBase:MI0019301 14 - microRNA 5694 miscRNA MIR5694 microRNA 5694 O - 20121230 -9606 100847065 MIR5591 - - HGNC:43531|miRBase:MI0019151 4 - microRNA 5591 miscRNA MIR5591 microRNA 5591 O - 20121230 -9606 100847066 MIR5692A1 - - HGNC:43533|miRBase:MI0019297 7 - microRNA 5692a-1 miscRNA MIR5692A1 microRNA 5692a-1 O - 20121230 -9606 100847067 MIR5089 - - HGNC:43536|miRBase:MI0017978 17 - microRNA 5089 miscRNA MIR5089 microRNA 5089 O - 20121230 -9606 100847068 MIR548AO - - HGNC:43539|miRBase:MI0017871 8 - microRNA 548ao miscRNA MIR548AO microRNA 548ao O - 20121230 -9606 100847069 MIR5590 - - HGNC:43541|miRBase:MI0019150 2 - microRNA 5590 miscRNA MIR5590 microRNA 5590 O - 20121230 -9606 100847070 MIR5196 - - HGNC:43542|miRBase:MI0018175 19 - microRNA 5196 miscRNA MIR5196 microRNA 5196 O - 20121230 -9606 100847071 MIR5684 - - HGNC:43544|miRBase:MI0019285 19 - microRNA 5684 miscRNA MIR5684 microRNA 5684 O - 20121230 -9606 100847072 MIR5008 - - HGNC:43546|miRBase:MI0017876 1 - microRNA 5008 miscRNA MIR5008 microRNA 5008 O - 20121230 -9606 100847073 MIR5090 - - HGNC:43547|miRBase:MI0017979 7 - microRNA 5090 miscRNA MIR5090 microRNA 5090 O - 20121230 -9606 100847074 MIR5088 - - HGNC:43489|miRBase:MI0017977 19 - microRNA 5088 miscRNA MIR5088 microRNA 5088 O - 20121230 -9606 100847075 MIR5685 - - HGNC:43543|miRBase:MI0019287 6 - microRNA 5685 miscRNA MIR5685 microRNA 5685 O - 20121230 -9606 100847076 MIR5580 - - HGNC:43482|miRBase:MI0019135 14 - microRNA 5580 miscRNA MIR5580 microRNA 5580 O - 20121230 -9606 100847077 MIR5688 - - HGNC:43463|miRBase:MI0019292 3 - microRNA 5688 miscRNA MIR5688 microRNA 5688 O - 20121230 -9606 100847078 MIR548AQ - - HGNC:43488|miRBase:MI0019130 3 - microRNA 548aq miscRNA MIR548AQ microRNA 548aq O - 20121230 -9606 100847079 MIR5193 - - HGNC:43534|miRBase:MI0018172 3 - microRNA 5193 miscRNA MIR5193 microRNA 5193 O - 20121230 -9606 100847080 MIR5190 - - HGNC:43549|miRBase:MI0018169 18 - microRNA 5190 miscRNA MIR5190 microRNA 5190 O - 20121230 -9606 100847081 MIR5703 - - HGNC:43475|miRBase:MI0019310 2 - microRNA 5703 miscRNA MIR5703 microRNA 5703 O - 20121230 -9606 100847082 MIR5692C1 - - HGNC:43506|miRBase:MI0019288 5 - microRNA 5692c-1 miscRNA MIR5692C1 microRNA 5692c-1 O - 20121230 -9606 100847083 MIR548AV - - HGNC:43537|miRBase:MI0019152 18 - microRNA 548av miscRNA MIR548AV microRNA 548av O - 20121230 -9606 100847084 MIR548AP - - HGNC:43465|miRBase:MI0017875 15 - microRNA 548ap miscRNA MIR548AP microRNA 548ap O - 20121230 -9606 100847085 MIR5706 - - HGNC:43500|miRBase:MI0019314 5 - microRNA 5706 miscRNA MIR5706 microRNA 5706 O - 20121230 -9606 100847086 MIR5699 - - HGNC:43456|miRBase:MI0019306 10 - microRNA 5699 miscRNA MIR5699 microRNA 5699 O - 20121230 -9606 100847087 MIR5192 - - HGNC:43473|miRBase:MI0018171 2 - microRNA 5192 miscRNA MIR5192 microRNA 5192 O - 20121230 -9606 100847088 MIR5586 - - HGNC:43493|miRBase:MI0019143 14 - microRNA 5586 miscRNA MIR5586 microRNA 5586 O - 20121230 -9606 100847089 MIR5584 - - HGNC:43507|miRBase:MI0019141 1 - microRNA 5584 miscRNA MIR5584 microRNA 5584 O - 20121230 -9606 100847090 MIR5187 - - HGNC:43523|miRBase:MI0018166 1 - microRNA 5187 miscRNA MIR5187 microRNA 5187 O - 20121230 -9606 100847091 MIR5681B - - HGNC:43538|miRBase:MI0019293 8 - microRNA 5681b miscRNA MIR5681B microRNA 5681b O - 20121230 -9606 100847092 MIR548AS - - HGNC:43550|miRBase:MI0019132 13 - microRNA 548as miscRNA MIR548AS microRNA 548as O - 20121230 -9606 100847093 MIR5589 - - HGNC:43514|miRBase:MI0019148 19 - microRNA 5589 miscRNA MIR5589 microRNA 5589 O - 20121230 -9606 100852393 MRT29 - - MIM:614333 4 4q27-q28.2 Mental retardation, autosomal recessive 29 unknown - - - - 20120622 -9606 100852394 MRT33 - - MIM:614341 17 17p13.2-p13.1 Mental retardation, autosomal recessive 33 unknown - - - - 20120622 -9606 100852395 MRT19 - - HGNC:39153|MIM:614343 18 18p11.3 mental retardation, non-syndromic, autosomal recessive, 19 unknown MRT19 mental retardation, non-syndromic, autosomal recessive, 19 O - 20120622 -9606 100852396 MRT28 - - HGNC:39162|MIM:614347 6 6q26-q27 mental retardation, non-syndromic, autosomal recessive, 28 unknown MRT28 mental retardation, non-syndromic, autosomal recessive, 28 O - 20120622 -9606 100852397 MRT27 - - HGNC:39161|MIM:614340 15 15q24.1-q26.1 mental retardation, non-syndromic, autosomal recessive, 27 unknown MRT27 mental retardation, non-syndromic, autosomal recessive, 27 O - 20120622 -9606 100852398 MRT23 - - HGNC:39157|MIM:614344 11 11p13-q14.1 mental retardation, non-syndromic, autosomal recessive, 23 unknown MRT23 mental retardation, non-syndromic, autosomal recessive, 23 O - 20120622 -9606 100852399 MRT31 - - MIM:614329 4 4q12-q13.1 Mental retardation, autosomal recessive 31 unknown - - - - 20120622 -9606 100852400 MRT32 - - MIM:614339 14 14q32.13-q32.2 Mental retardation, autosomal recessive 32 unknown - - - - 20120622 -9606 100852401 MRT30 - - MIM:614342 6 6q12-q15 Mental retardation, autosomal recessive 30 unknown - - - - 20120622 -9606 100852402 MRT24 - - HGNC:39158|MIM:614345 6 6p12 mental retardation, non-syndromic, autosomal recessive, 24 unknown MRT24 mental retardation, non-syndromic, autosomal recessive, 24 O - 20120622 -9606 100852403 MRT25 - - HGNC:39159|MIM:614346 12 12q13.11-q15 mental retardation, non-syndromic, autosomal recessive, 25 unknown MRT25 mental retardation, non-syndromic, autosomal recessive, 25 O - 20120622 -9606 100852404 DEL17Q11.2 - C17DELq11.2 MIM:613675 17 17q11.2 chromosome 17q11.2 deletion syndrome unknown - - - - 20120622 -9606 100852405 RNF185-AS1 - - HGNC:41161 22 22q12.2 RNF185 antisense RNA 1 miscRNA RNF185-AS1 RNF185 antisense RNA 1 O - 20121021 -9606 100852406 POTEH-AS1 - - HGNC:40058 22 22q11.1 POTEH antisense RNA 1 miscRNA POTEH-AS1 POTEH antisense RNA 1 O - 20121021 -9606 100852407 CARS-AS1 - - HGNC:40125 11 11p15.4 CARS antisense RNA 1 miscRNA CARS-AS1 CARS antisense RNA 1 O - 20121021 -9606 100852408 EGFLAM-AS4 - - HGNC:41166 5 5p13.2 EGFLAM antisense RNA 4 miscRNA EGFLAM-AS4 EGFLAM antisense RNA 4 O - 20121230 -9606 100852409 NEGR1-IT1 - - HGNC:41432 1 1p31.1 NEGR1 intronic transcript 1 (non-protein coding) miscRNA NEGR1-IT1 NEGR1 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100852410 ZRANB2-AS2 - - HGNC:43595 1 1p31.1 ZRANB2 antisense RNA 2 (head to head) miscRNA ZRANB2-AS2 ZRANB2 antisense RNA 2 (head to head) O - 20121230 -9606 100856791 LOC100856791 - - - 3 3q26 TBP-like 1 pseudogene pseudo - - - - 20121230 -9606 100856809 OR3A5P RP11-64J4.6 OLFRA06|OR17-25|OR25 HGNC:8286 17 17p13.3 olfactory receptor, family 3, subfamily A, member 5 pseudogene pseudo OR3A5P olfactory receptor, family 3, subfamily A, member 5 pseudogene O - 20121230 -9606 100856810 TCEB2P3 - - HGNC:39721 2 2p16.3 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 3 pseudo TCEB2P3 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 3 O - 20121230 -9606 100856811 NRG1-IT1 - - HGNC:43633 8 8p12 NRG1 intronic transcript 1 (non-protein coding) miscRNA NRG1-IT1 NRG1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100856877 SETP15 - - HGNC:42934 X - SET pseudogene 15 pseudo SETP15 SET pseudogene 15 O - 20121230 -9606 100856878 SETP21 - - HGNC:42940 5 - SET pseudogene 21 pseudo SETP21 SET pseudogene 21 O - 20121230 -9606 100856881 MTND1P32 - - HGNC:42081 X - MT-ND1 pseudogene 32 pseudo MTND1P32 MT-ND1 pseudogene 32 O - 20121230 -9606 100859919 LOC100859919 - - - 2 2q21.2 chromosome 9 open reading frame 86 pseudogene 2 pseudo - - - - 20121230 -9606 100859920 HIGD1AP3 - - HGNC:42998 5 - HIG1 hypoxia inducible domain family, member 1A pseudogene 3 pseudo HIGD1AP3 HIG1 hypoxia inducible domain family, member 1A pseudogene 3 O - 20121230 -9606 100859921 LINC00536 - - HGNC:43645 8 8q23.3 long intergenic non-protein coding RNA 536 miscRNA LINC00536 long intergenic non-protein coding RNA 536 O - 20121230 -9606 100859922 ERVK11-1 - - HGNC:43647 1 1p13.3 endogenous retrovirus group K11, member 1 unknown ERVK11-1 endogenous retrovirus group K11, member 1 O - 20121016 -9606 100859924 SUMO2P2 - - HGNC:39012 9 9p21.3 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 2 pseudo SUMO2P2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 2 O - 20121230 -9606 100859925 COX5BP8 - - HGNC:39083 1 1q25.2 cytochrome c oxidase subunit Vb pseudogene 8 pseudo COX5BP8 cytochrome c oxidase subunit Vb pseudogene 8 O - 20121230 -9606 100859926 NANOGNBP1 - - HGNC:42158 2 2q11.2 NANOGNB pseudogene 1 pseudo NANOGNBP1 NANOGNB pseudogene 1 O - 20121230 -9606 100859927 AAA4 - - MIM:614375 12 12q13.3 Aortic aneurysm, familial abdominal, 4 unknown - - - - 20120622 -9606 100859928 BMIQ16 - C16DELp11.2|DEL16p.11.2 MIM:613444 16 16p11.2 Chromosome 16p11.2 deletion syndrome, 220kb unknown - - - - 20120622 -9606 100859930 LOC100859930 - - - 5 5q35.3 uncharacterized LOC100859930 miscRNA - - - - 20121230 -9606 100861402 CERS6-AS1 - - HGNC:44485 2 2q CERS6 antisense RNA 1 miscRNA CERS6-AS1 CERS6 antisense RNA 1 O - 20121230 -9606 100861412 FSBP - - HGNC:43653|Ensembl:ENSG00000265817|Vega:OTTHUMG00000178341 8 8q fibrinogen silencer binding protein protein-coding FSBP fibrinogen silencer binding protein O fibrinogen silencer-binding protein 20121230 -9606 100861429 YRDCP3 - - HGNC:39921 21 - yrdC domain containing (E. coli) pseudogene 3 pseudo YRDCP3 yrdC domain containing (E. coli) pseudogene 3 O - 20121230 -9606 100861430 LOC100861430 - - - 15 15q programmed cell death 6 interacting protein pseudogene pseudo - - - - 20121230 -9606 100861431 YBX1P7 - - HGNC:42428 2 - Y box binding protein 1 pseudogene 7 pseudo YBX1P7 Y box binding protein 1 pseudogene 7 O - 20121230 -9606 100861434 USP9YP13 - - HGNC:38721 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 13 pseudo USP9YP13 ubiquitin specific peptidase 9, Y-linked pseudogene 13 O - 20121230 -9606 100861435 SRIP3 - - HGNC:38735 Y - sorcin pseudogene 3 pseudo SRIP3 sorcin pseudogene 3 O - 20121209 -9606 100861436 PRPS1P1 - - HGNC:39427 2 - phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 pseudo PRPS1P1 phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 O - 20121230 -9606 100861437 NARR - - Ensembl:ENSG00000109113|Vega:OTTHUMG00000132680 17 17q nine-amino acid residue-repeats protein-coding - - - nine amino-acid residue-repeats|ras-related protein Rab-34 20121230 -9606 100861438 SPG46 - - HGNC:37080|MIM:614409 9 9p21.2-q21.12 spastic paraplegia 46 (autosomal recessive) unknown SPG46 spastic paraplegia 46 (autosomal recessive) O - 20120622 -9606 100861439 CCA5 - - MIM:614422 12 12q24.2-q24.3 Cataract, congenital cerulean type, 5 unknown - - - - 20120622 -9606 100861440 DFNB96 - - HGNC:39437|MIM:614414 1 1p36.31-p36.13 deafness, autosomal recessive 96 unknown DFNB96 deafness, autosomal recessive 96 O - 20120622 -9606 100861443 LOC100861443 - - - 19 19q DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 100861445 LOC100861445 - - - 19 19q DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 100861449 LOC100861449 - - - 6 6q DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 100861453 LOC100861453 - - - 2 2q DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 100861455 LOC100861455 - - - 1 1p DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 100861458 LOC100861458 - - - 1 1p DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene pseudo - - - - 20121230 -9606 100861467 ERVK-13 - c3_D HGNC:39008 3 3q24 endogenous retrovirus group K, member 13 unknown ERVK-13 endogenous retrovirus group K, member 13 O - 20121017 -9606 100861468 LINC00492 - - HGNC:43429 5 5q21.1 long intergenic non-protein coding RNA 492 miscRNA LINC00492 long intergenic non-protein coding RNA 492 O - 20121021 -9606 100861469 PTP4A1P3 - - HGNC:41930 7 7q21.13 protein tyrosine phosphatase type IVA, member 1 pseudogene 3 pseudo PTP4A1P3 protein tyrosine phosphatase type IVA, member 1 pseudogene 3 O - 20121230 -9606 100861470 YBX1P9 - - HGNC:42430 1 1q42.12 Y box binding protein 1 pseudogene 9 pseudo YBX1P9 Y box binding protein 1 pseudogene 9 O - 20121230 -9606 100861476 YBX1P8 - - HGNC:42429 X Xp11.23 Y box binding protein 1 pseudogene 8 pseudo YBX1P8 Y box binding protein 1 pseudogene 8 O - 20121230 -9606 100861485 DUTP3 - - HGNC:39516 7 7q35 deoxyuridine triphosphatase pseudogene 3 pseudo DUTP3 deoxyuridine triphosphatase pseudogene 3 O - 20121230 -9606 100861504 LINC00538 - Yiya HGNC:43655|MIM:614635 1 1q32.3 long intergenic non-protein coding RNA 538 miscRNA LINC00538 long intergenic non-protein coding RNA 538 O - 20121230 -9606 100861506 LSAMP-AS2 - - HGNC:40351 3 3q13.31 LSAMP antisense RNA 2 miscRNA LSAMP-AS2 LSAMP antisense RNA 2 O - 20121021 -9606 100861507 FTCD-AS1 - - HGNC:40243 21 21q22.3 FTCD antisense RNA 1 miscRNA FTCD-AS1 FTCD antisense RNA 1 O - 20121021 -9606 100861508 HMBOX1-OT1 - - HGNC:43631 8 8p12 HMBOX1 overlapping transcript 1 (non-protein coding) miscRNA HMBOX1-OT1 HMBOX1 overlapping transcript 1 (non-protein coding) O - 20120508 -9606 100861509 ULK4-IT1 - - HGNC:41413 3 3p22.1 ULK4 intronic transcript 1 (non-protein coding) miscRNA ULK4-IT1 ULK4 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100861510 LRRC3-AS1 - - HGNC:43636 21 21q22.3 LRRC3 antisense RNA 1 (head to head) miscRNA LRRC3-AS1 LRRC3 antisense RNA 1 (head to head) O - 20121230 -9606 100861512 CDKN1A-AS1 - p21NAT HGNC:42399 6 6p21.1 CDKN1A antisense RNA 1 miscRNA CDKN1A-AS1 CDKN1A antisense RNA 1 O - 20120816 -9606 100861513 ZMYM4-AS1 - - HGNC:40624 1 1p34.3 ZMYM4 antisense RNA 1 miscRNA ZMYM4-AS1 ZMYM4 antisense RNA 1 O - 20121021 -9606 100861514 ELMO1-AS1 - - HGNC:40765 7 7p14.2 ELMO1 antisense RNA 1 miscRNA ELMO1-AS1 ELMO1 antisense RNA 1 O - 20121021 -9606 100861515 TRAPPC12-AS1 - - HGNC:41046 2 2p25.3 TRAPPC12 antisense RNA 1 miscRNA TRAPPC12-AS1 TRAPPC12 antisense RNA 1 O - 20121021 -9606 100861516 RAI1-AS1 - - HGNC:40496 17 17p11.2 RAI1 antisense RNA 1 miscRNA RAI1-AS1 RAI1 antisense RNA 1 O - 20121021 -9606 100861517 OCIAD1-AS1 - - HGNC:40751 4 4p11 OCIAD1 antisense RNA 1 miscRNA OCIAD1-AS1 OCIAD1 antisense RNA 1 O - 20121021 -9606 100861518 P4HA2-AS1 - - HGNC:43560 5 5q31.1 P4HA2 antisense RNA 1 miscRNA P4HA2-AS1 P4HA2 antisense RNA 1 O - 20121021 -9606 100861519 GDNF-AS1 - GDNFOS HGNC:43592 5 5p13.2 GDNF antisense RNA 1 (head to head) miscRNA GDNF-AS1 GDNF antisense RNA 1 (head to head) O - 20121230 -9606 100861520 POU6F2-AS1 - - HGNC:40979 7 7p14.1 POU6F2 antisense RNA 1 miscRNA POU6F2-AS1 POU6F2 antisense RNA 1 O - 20121230 -9606 100861521 PSPC1-OT1 - - HGNC:42702 13 13q12.11 PSPC1 overlapping transcript 1 (non-protein coding) miscRNA PSPC1-OT1 PSPC1 overlapping transcript 1 (non-protein coding) O - 20121021 -9606 100861522 LINC00489 - - HGNC:43426 20 20q11.23 long intergenic non-protein coding RNA 489 miscRNA LINC00489 long intergenic non-protein coding RNA 489 O - 20121230 -9606 100861523 RPS6KA2-AS1 - - HGNC:40511 6 6q27 RPS6KA2 antisense RNA 1 miscRNA RPS6KA2-AS1 RPS6KA2 antisense RNA 1 O - 20121021 -9606 100861529 HHPP - - MIM:144110 14 14q11.2-q13 Hyperhidrosis palmaris et plantaris unknown - - - - 20120622 -9606 100861530 UFL1-AS1 RP3-443E24.1 - HGNC:41007 6 6q16.1 UFL1 antisense RNA 1 miscRNA UFL1-AS1 UFL1 antisense RNA 1 O - 20121021 -9606 100861532 RNA45S5 - RN45S HGNC:44273 22 - RNA, 45S pre-ribosomal 5 rRNA RNA45S5 RNA, 45S pre-ribosomal 5 O - 20121230 -9606 100861540 CYP3A7-CYP3AP1 - CYP3A7-3AP1|CYP3A7.1L - 7 7q CYP3A7-CYP3AP1 readthrough protein-coding - - - - 20121230 -9606 100861541 DOCK9-AS2 - - HGNC:43696 13 13q32.3 DOCK9 antisense RNA 2 (head to head) miscRNA DOCK9-AS2 DOCK9 antisense RNA 2 (head to head) O - 20121016 -9606 100861542 LINC00554 - - HGNC:43697 13 13q32.3 long intergenic non-protein coding RNA 554 miscRNA LINC00554 long intergenic non-protein coding RNA 554 O - 20120508 -9606 100861543 LINC00555 - - HGNC:43699 13 13q33.1 long intergenic non-protein coding RNA 555 miscRNA LINC00555 long intergenic non-protein coding RNA 555 O - 20120508 -9606 100861544 LINC00557 - - HGNC:43701 13 13q32.1 long intergenic non-protein coding RNA 557 miscRNA LINC00557 long intergenic non-protein coding RNA 557 O - 20120508 -9606 100861545 LINC00561 - - HGNC:43705 13 13q22.2 long intergenic non-protein coding RNA 561 miscRNA LINC00561 long intergenic non-protein coding RNA 561 O - 20120508 -9606 100861546 LINC00564 - - HGNC:43708 13 13q31.1 long intergenic non-protein coding RNA 564 miscRNA LINC00564 long intergenic non-protein coding RNA 564 O - 20120508 -9606 100861547 LINC00566 - - HGNC:43710 13 13q12.12 long intergenic non-protein coding RNA 566 miscRNA LINC00566 long intergenic non-protein coding RNA 566 O - 20120508 -9606 100861548 PINK1-AS - NAPINK1|PINK1-AS1|PINK1AS HGNC:38872 1 1p36.12 PINK1 antisense RNA miscRNA PINK1-AS PINK1 antisense RNA O - 20121021 -9606 100861549 LINC00562 - - HGNC:43706 13 13q14.2 long intergenic non-protein coding RNA 562 miscRNA LINC00562 long intergenic non-protein coding RNA 562 O - 20120508 -9606 100861550 PDX1-AS1 - - HGNC:43698 13 13q12.2 PDX1 antisense RNA 1 miscRNA PDX1-AS1 PDX1 antisense RNA 1 O - 20121021 -9606 100861551 LINC00556 - - HGNC:43700 13 13q12.11 long intergenic non-protein coding RNA 556 miscRNA LINC00556 long intergenic non-protein coding RNA 556 O - 20120508 -9606 100861552 LINC00558 - - HGNC:43702 13 13q14.3 long intergenic non-protein coding RNA 558 miscRNA LINC00558 long intergenic non-protein coding RNA 558 O - 20121230 -9606 100861553 LINC00560 - - HGNC:43704 13 13q31.2 long intergenic non-protein coding RNA 560 miscRNA LINC00560 long intergenic non-protein coding RNA 560 O - 20120508 -9606 100861554 LINC00563 - - HGNC:43707 13 13q14.13 long intergenic non-protein coding RNA 563 miscRNA LINC00563 long intergenic non-protein coding RNA 563 O - 20121230 -9606 100861555 LINC00565 - - HGNC:43709 13 13q34 long intergenic non-protein coding RNA 565 miscRNA LINC00565 long intergenic non-protein coding RNA 565 O - 20121230 -9606 100861556 YBX1P3 - - HGNC:42424 3 3q13.31 Y box binding protein 1 pseudogene 3 pseudo YBX1P3 Y box binding protein 1 pseudogene 3 O - 20121230 -9606 100861563 SCAANT1 - ATXN7-AS1 HGNC:43718|MIM:614481 3 3p21 SCA7/ATXN7 antisense RNA 1 miscRNA SCAANT1 SCA7/ATXN7 antisense RNA 1 O - 20120816 -9606 100861569 YBX1P5 - - HGNC:42426 5 5q13.2 Y box binding protein 1 pseudogene 5 pseudo YBX1P5 Y box binding protein 1 pseudogene 5 O - 20121230 -9606 100861573 LINC00572 - - HGNC:43722 13 13q12.3 long intergenic non-protein coding RNA 572 miscRNA LINC00572 long intergenic non-protein coding RNA 572 O - 20121021 -9606 100861574 SNRPGP6 - - HGNC:39325 10 10q25.3 small nuclear ribonucleoprotein polypeptide G pseudogene 6 pseudo SNRPGP6 small nuclear ribonucleoprotein polypeptide G pseudogene 6 O - 20121230 -9606 100861591 MANEA-AS1 - - HGNC:43732 6 6q16.1 MANEA antisense RNA 1 (head to head) miscRNA MANEA-AS1 MANEA antisense RNA 1 (head to head) O - 20121016 -9606 100862662 ALDH1L1-AS2 - - HGNC:42446 3 3q21.3 ALDH1L1 antisense RNA 2 miscRNA ALDH1L1-AS2 ALDH1L1 antisense RNA 2 O - 20121230 -9606 100862663 RNY4P21 - - HGNC:42471 14 14q24.3 RNA, Ro-associated Y4 pseudogene 21 pseudo RNY4P21 RNA, Ro-associated Y4 pseudogene 21 O - 20121230 -9606 100862664 RNY4P24 - - HGNC:42474 13 13q14.3 RNA, Ro-associated Y4 pseudogene 24 pseudo RNY4P24 RNA, Ro-associated Y4 pseudogene 24 O - 20121230 -9606 100862665 RNY4P25 - - HGNC:42475 1 1q21.3 RNA, Ro-associated Y4 pseudogene 25 pseudo RNY4P25 RNA, Ro-associated Y4 pseudogene 25 O - 20121230 -9606 100862666 RNY1P2 - - HGNC:42479 13 13q33.1 RNA, Ro-associated Y1 pseudogene 2 pseudo RNY1P2 RNA, Ro-associated Y1 pseudogene 2 O - 20121230 -9606 100862667 RNY1P5 - - HGNC:42482 13 13q22.1 RNA, Ro-associated Y1 pseudogene 5 pseudo RNY1P5 RNA, Ro-associated Y1 pseudogene 5 O - 20121230 -9606 100862668 RNY3P2 - - HGNC:42486 13 13q14.2 RNA, Ro-associated Y3 pseudogene 2 pseudo RNY3P2 RNA, Ro-associated Y3 pseudogene 2 O - 20121230 -9606 100862669 RNY3P3 - - HGNC:42487 13 13q22.3 RNA, Ro-associated Y3 pseudogene 3 pseudo RNY3P3 RNA, Ro-associated Y3 pseudogene 3 O - 20121021 -9606 100862670 RNY3P7 - - HGNC:42491 13 13q22.3 RNA, Ro-associated Y3 pseudogene 7 pseudo RNY3P7 RNA, Ro-associated Y3 pseudogene 7 O - 20121230 -9606 100862671 LOC100862671 - - - 16 16p uncharacterized LOC100862671 protein-coding - - - uncharacterized protein LOC100862671 20121230 -9606 100862672 RNY3P9 - - HGNC:42493 13 13q14.11 RNA, Ro-associated Y3 pseudogene 9 pseudo RNY3P9 RNA, Ro-associated Y3 pseudogene 9 O - 20121021 -9606 100862673 RNY4P30 - - HGNC:42498 13 13q14.2 RNA, Ro-associated Y4 pseudogene 30 pseudo RNY4P30 RNA, Ro-associated Y4 pseudogene 30 O - 20121021 -9606 100862674 RNY4P31 - - HGNC:42499 13 13q21.2 RNA, Ro-associated Y4 pseudogene 31 pseudo RNY4P31 RNA, Ro-associated Y4 pseudogene 31 O - 20121021 -9606 100862675 RNU4-9P - - HGNC:42507 13 13q12.11 RNA, U4 small nuclear 9, pseudogene pseudo RNU4-9P RNA, U4 small nuclear 9, pseudogene O - 20121230 -9606 100862676 RNU4-10P - - HGNC:42508 13 13q22.1 RNA, U4 small nuclear 10, pseudogene pseudo RNU4-10P RNA, U4 small nuclear 10, pseudogene O - 20121230 -9606 100862677 RBMX2P4 - - HGNC:39926 7 7p21.3 RNA binding motif protein, X-linked 2 pseudogene 4 pseudo RBMX2P4 RNA binding motif protein, X-linked 2 pseudogene 4 O - 20121230 -9606 100862678 IL20RB-AS1 - - HGNC:40298 3 3q22.3 IL20RB antisense RNA 1 unknown IL20RB-AS1 IL20RB antisense RNA 1 O - 20121021 -9606 100862679 NAALADL2-AS3 - - HGNC:41014 3 3q26.3 NAALADL2 antisense RNA 3 miscRNA NAALADL2-AS3 NAALADL2 antisense RNA 3 O - 20121230 -9606 100862680 LINC00507 - - HGNC:43558 12 12q24.32 long intergenic non-protein coding RNA 507 miscRNA LINC00507 long intergenic non-protein coding RNA 507 O - 20121230 -9606 100862681 RP63 - - MIM:614494 6 6q23 Retinitis pigmentosa 63 unknown - - - - 20120622 -9606 100862682 LOC100862682 - - - 9 9p13.3 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing pseudogene pseudo - - - - 20121230 -9606 100862683 ERVK-25 - c11_A HGNC:39039 11 11q22.1 endogenous retrovirus group K, member 25 unknown ERVK-25 endogenous retrovirus group K, member 25 O - 20121017 -9606 100862684 ERVK-24 - HERV-K101|c22_A HGNC:39038 22 22q11.21 endogenous retrovirus group K, member 24 unknown ERVK-24 endogenous retrovirus group K, member 24 O - 20121017 -9606 100862685 ERVK-19 - HERV-K(C19)|P1.8|envK3|polymerase HGNC:39026 19 19q11 endogenous retrovirus group K, member 19 unknown ERVK-19 endogenous retrovirus group K, member 19 O - 20120726 -9606 100862686 ERVK-17 - - HGNC:39024 - - endogenous retrovirus group K, member 17 unknown ERVK-17 endogenous retrovirus group K, member 17 O - 20121017 -9606 100862687 ERVK-14 - c7_B HGNC:39019 7 7q22.1 endogenous retrovirus group K, member 14 unknown ERVK-14 endogenous retrovirus group K, member 14 O - 20121017 -9606 100862688 ERVK-11 - N8.4|c3_E|polymerase HGNC:39006 3 3q27.2 endogenous retrovirus group K, member 11 unknown ERVK-11 endogenous retrovirus group K, member 11 O - 20121211 -9606 100862689 ERVK-3 - c3_B HGNC:39002 3 3q13.2 endogenous retrovirus group K, member 3 unknown ERVK-3 endogenous retrovirus group K, member 3 O - 20121017 -9606 100862690 ERVK-1 - c1_A HGNC:39000 1 1p31.1 endogenous retrovirus group K, member 1 unknown ERVK-1 endogenous retrovirus group K, member 1 O - 20121017 -9606 100862691 ERVE-2 - - HGNC:39048 11 11q13.2 endogenous retrovirus group E, member 2 unknown ERVE-2 endogenous retrovirus group E, member 2 O - 20120318 -9606 100862692 DIP2A-IT1 - - HGNC:41430 21 21q22.3 DIP2A intronic transcript 1 (non-protein coding) miscRNA DIP2A-IT1 DIP2A intronic transcript 1 (non-protein coding) O - 20121230 -9606 100862693 ERVPABLB-1 - envR(b) HGNC:39042 3 3p24.3 endogenous retrovirus group PABLB, member 1 unknown ERVPABLB-1 endogenous retrovirus group PABLB, member 1 O - 20121017 -9606 100862694 ERVS71-1 - envT HGNC:41525 19 19p12 endogenous retrovirus group S71, member 1 unknown ERVS71-1 endogenous retrovirus group S71, member 1 O - 20121017 -9606 100862695 ERVW-5 - CL2 HGNC:39044 3 3q26.32 endogenous retrovirus group W, member 5 unknown ERVW-5 endogenous retrovirus group W, member 5 O - 20120318 -9606 100862696 ERVW-3 - CL4 HGNC:39041 3 3q23 endogenous retrovirus group W, member 3 unknown ERVW-3 endogenous retrovirus group W, member 3 O - 20120318 -9606 100862697 ERVK3-2 - HML6-c14|PP3227 HGNC:39040 14 14q24.2 endogenous retrovirus group K3, member 2 unknown ERVK3-2 endogenous retrovirus group K3, member 2 O - 20120726 -9606 100862698 ERVH-7 - - HGNC:39059 14 14q32.12 endogenous retrovirus group H, member 7 unknown ERVH-7 endogenous retrovirus group H, member 7 O - 20121017 -9606 100862699 ERVH-5 - - HGNC:39057 10 10p12.1 endogenous retrovirus group H, member 5 unknown ERVH-5 endogenous retrovirus group H, member 5 O - 20120318 -9606 100862700 ERVE-3 - - HGNC:39049 8 8p23.1 endogenous retrovirus group E, member 3 unknown ERVE-3 endogenous retrovirus group E, member 3 O - 20120318 -9606 100862704 LINC00441 - - HGNC:42778 13 13q14.2 long intergenic non-protein coding RNA 441 miscRNA LINC00441 long intergenic non-protein coding RNA 441 O - 20121230 -9606 100862705 LOC100862705 - - - 20 20p KN motif and ankyrin repeat domains 1 pseudogene pseudo - - - - 20121230 -9606 100862706 CATMANS - - MIM:302380 X - Catel-Manzke syndrome unknown - - - - 20120622 -9606 100862725 TIMM9P3 - - HGNC:39930 13 13q14.13 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 3 pseudo TIMM9P3 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 3 O - 20121230 -9606 100862726 TIMM9P1 - - HGNC:39928 10 10q22.2 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 1 pseudo TIMM9P1 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 1 O - 20121230 -9606 100862727 TIMM9P2 - - HGNC:39929 21 21q22.2 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 2 pseudo TIMM9P2 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 2 O - 20121230 -9606 100862728 UPK1A-AS1 - - HGNC:40603 19 19q13.12 UPK1A antisense RNA 1 miscRNA UPK1A-AS1 UPK1A antisense RNA 1 O - 20121230 -9606 100862847 USP17L - - - 4 - ubiquitin carboxyl-terminal hydrolase 17-like protein protein-coding - - - - 20120318 -9606 100862850 EEF1A1P39 - - HGNC:37917 10 10p11.23 eukaryotic translation elongation factor 1 alpha 1 pseudogene 39 pseudo EEF1A1P39 eukaryotic translation elongation factor 1 alpha 1 pseudogene 39 O - 20121230 -9606 100862851 YWHAQP9 - - HGNC:37688 1 1q43 YWHAQ pseudogene 9 pseudo YWHAQP9 YWHAQ pseudogene 9 O - 20121230 -9606 100862852 SLAMF6P1 - - HGNC:32012 1 1q23.3 SLAM family member 6 pseudogene 1 pseudo SLAMF6P1 SLAM family member 6 pseudogene 1 O - 20121230 -9606 100862853 MTND4P13 - - HGNC:42222 6 6q25.2 MT-ND4 pseudogene 13 pseudo MTND4P13 MT-ND4 pseudogene 13 O - 20121230 -9606 100862854 MTND5P16 - - HGNC:42278 3 - MT-ND5 pseudogene 16 pseudo MTND5P16 MT-ND5 pseudogene 16 O - 20121230 -9606 100862855 COX6CP5 - - HGNC:42791 11 11p15.4 cytochrome c oxidase subunit VIc pseudogene 5 pseudo COX6CP5 cytochrome c oxidase subunit VIc pseudogene 5 O - 20121230 -9606 100873064 AIMP1P2 - - HGNC:43693 1 1q24.3 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 pseudogene 2 pseudo AIMP1P2 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 pseudogene 2 O - 20121230 -9606 100873065 LOC100873065 - - - X Xp22.11 uncharacterized LOC100873065 miscRNA - - - - 20121230 -9606 100873152 DISC1FP1 - - HGNC:33625 11 11q14.3 DISC1 fusion partner 1 (non-protein coding) miscRNA DISC1FP1 DISC1 fusion partner 1 (non-protein coding) O - 20121018 -9606 100873165 SRGAP2-AS1 - - HGNC:40902 1 1q32.1 SRGAP2 antisense RNA 1 miscRNA SRGAP2-AS1 SRGAP2 antisense RNA 1 O - 20120816 -9606 100873166 SETP7 - - HGNC:42926 12 - SET pseudogene 7 pseudo SETP7 SET pseudogene 7 O - 20121230 -9606 100873167 SETP13 - - HGNC:42932 17 - SET pseudogene 13 pseudo SETP13 SET pseudogene 13 O - 20120510 -9606 100873168 MTCYBP2 - - HGNC:38807 Y - MT-CYB pseudogene 2 pseudo MTCYBP2 MT-CYB pseudogene 2 O - 20121230 -9606 100873169 MTCYBP4 - - HGNC:41923 6 - MT-CYB pseudogene 4 pseudo MTCYBP4 MT-CYB pseudogene 4 O - 20121230 -9606 100873170 MTND1P2 - - HGNC:42051 7 - MT-ND1 pseudogene 2 pseudo MTND1P2 MT-ND1 pseudogene 2 O - 20121230 -9606 100873171 MTND1P4 - - HGNC:42053 7 - MT-ND1 pseudogene 4 pseudo MTND1P4 MT-ND1 pseudogene 4 O - 20121230 -9606 100873172 MTND1P7 - - HGNC:42102 8 - MT-ND1 pseudogene 7 pseudo MTND1P7 MT-ND1 pseudogene 7 O - 20121230 -9606 100873173 MTND1P6 - - HGNC:42103 8 - MT-ND1 pseudogene 6 pseudo MTND1P6 MT-ND1 pseudogene 6 O - 20121230 -9606 100873174 MTND1P5 - - HGNC:42104 8 - MT-ND1 pseudogene 5 pseudo MTND1P5 MT-ND1 pseudogene 5 O - 20121230 -9606 100873175 MTND2P4 - - HGNC:42105 7 - MT-ND2 pseudogene 4 pseudo MTND2P4 MT-ND2 pseudogene 4 O - 20121230 -9606 100873176 MTND2P5 - - HGNC:42106 7 - MT-ND2 pseudogene 5 pseudo MTND2P5 MT-ND2 pseudogene 5 O - 20121230 -9606 100873177 MTND2P6 - - HGNC:42107 7 - MT-ND2 pseudogene 6 pseudo MTND2P6 MT-ND2 pseudogene 6 O - 20121230 -9606 100873178 MTND2P8 - - HGNC:42109 9 - MT-ND2 pseudogene 8 pseudo MTND2P8 MT-ND2 pseudogene 8 O - 20121230 -9606 100873179 MTND2P7 - - HGNC:42141 8 - MT-ND2 pseudogene 7 pseudo MTND2P7 MT-ND2 pseudogene 7 O - 20121230 -9606 100873180 MTND3P2 - - HGNC:42142 7 - MT-ND3 pseudogene 2 pseudo MTND3P2 MT-ND3 pseudogene 2 O - 20121230 -9606 100873181 MTND3P4 - - HGNC:42144 9 - MT-ND3 pseudogene 4 pseudo MTND3P4 MT-ND3 pseudogene 4 O - 20121230 -9606 100873182 MTND3P6 - - HGNC:42146 3 - MT-ND3 pseudogene 6 pseudo MTND3P6 MT-ND3 pseudogene 6 O - 20121230 -9606 100873183 MTND3P7 - - HGNC:42147 3 - MT-ND3 pseudogene 7 pseudo MTND3P7 MT-ND3 pseudogene 7 O - 20121230 -9606 100873184 MTND3P9 - - HGNC:42149 2 - MT-ND3 pseudogene 9 pseudo MTND3P9 MT-ND3 pseudogene 9 O - 20121230 -9606 100873185 MTND3P8 - - HGNC:42153 1 - MT-ND3 pseudogene 8 pseudo MTND3P8 MT-ND3 pseudogene 8 O - 20121230 -9606 100873186 MTND3P5 - - HGNC:42154 4 - MT-ND3 pseudogene 5 pseudo MTND3P5 MT-ND3 pseudogene 5 O - 20121230 -9606 100873187 MTND3P3 - - HGNC:42155 4 - MT-ND3 pseudogene 3 pseudo MTND3P3 MT-ND3 pseudogene 3 O - 20121230 -9606 100873188 MTND4P2 - - HGNC:42189 7 - MT-ND4 pseudogene 2 pseudo MTND4P2 MT-ND4 pseudogene 2 O - 20121230 -9606 100873189 MTND4P3 - - HGNC:42190 7 - MT-ND4 pseudogene 3 pseudo MTND4P3 MT-ND4 pseudogene 3 O - 20121230 -9606 100873190 MTND4P4 - - HGNC:42191 7 - MT-ND4 pseudogene 4 pseudo MTND4P4 MT-ND4 pseudogene 4 O - 20121021 -9606 100873191 MTND4P5 - - HGNC:42192 7 - MT-ND4 pseudogene 5 pseudo MTND4P5 MT-ND4 pseudogene 5 O - 20121230 -9606 100873192 MTND4P6 - - HGNC:42193 7 - MT-ND4 pseudogene 6 pseudo MTND4P6 MT-ND4 pseudogene 6 O - 20121230 -9606 100873193 MTND4P9 - - HGNC:42226 4 - MT-ND4 pseudogene 9 pseudo MTND4P9 MT-ND4 pseudogene 9 O - 20121230 -9606 100873194 MTND4P8 - - HGNC:42227 4 - MT-ND4 pseudogene 8 pseudo MTND4P8 MT-ND4 pseudogene 8 O - 20121230 -9606 100873195 MTND4P7 - - HGNC:42234 8 - MT-ND4 pseudogene 7 pseudo MTND4P7 MT-ND4 pseudogene 7 O - 20121230 -9606 100873196 MTND5P6 - - HGNC:42268 7 - MT-ND5 pseudogene 6 pseudo MTND5P6 MT-ND5 pseudogene 6 O - 20121230 -9606 100873197 MTND5P7 - - HGNC:42269 7 - MT-ND5 pseudogene 7 pseudo MTND5P7 MT-ND5 pseudogene 7 O - 20121230 -9606 100873198 MTND5P8 - - HGNC:42270 7 - MT-ND5 pseudogene 8 pseudo MTND5P8 MT-ND5 pseudogene 8 O - 20121230 -9606 100873199 MTND5P9 - - HGNC:42305 4 - MT-ND5 pseudogene 9 pseudo MTND5P9 MT-ND5 pseudogene 9 O - 20121230 -9606 100873200 MTND5P4 - - HGNC:42306 4 - MT-ND5 pseudogene 4 pseudo MTND5P4 MT-ND5 pseudogene 4 O - 20121230 -9606 100873201 MTND5P5 - - HGNC:42307 4 - MT-ND5 pseudogene 5 pseudo MTND5P5 MT-ND5 pseudogene 5 O - 20121230 -9606 100873202 MTCO2P2 - HsT4010 HGNC:25354 18 - MT-CO2 pseudogene 2 pseudo MTCO2P2 MT-CO2 pseudogene 2 O - 20121230 -9606 100873203 MTCO2P3 - - HGNC:39576 13 - MT-CO2 pseudogene 3 pseudo MTCO2P3 MT-CO2 pseudogene 3 O - 20121230 -9606 100873204 MTCYBP3 - - HGNC:39579 13 - MT-CYB pseudogene 3 pseudo MTCYBP3 MT-CYB pseudogene 3 O - 20121230 -9606 100873205 MTCO1P3 - - HGNC:39604 21 - MT-CO1 pseudogene 3 pseudo MTCO1P3 MT-CO1 pseudogene 3 O - 20121230 -9606 100873206 MTND5P1 - - HGNC:39644 21 - MT-ND5 pseudogene 1 pseudo MTND5P1 MT-ND5 pseudogene 1 O - 20121230 -9606 100873207 MTCO3P2 - - HGNC:39681 13 - MT-CO3 pseudogene 2 pseudo MTCO3P2 MT-CO3 pseudogene 2 O - 20121230 -9606 100873208 MTND3P1 - - HGNC:39856 13 - MT-ND3 pseudogene 1 pseudo MTND3P1 MT-ND3 pseudogene 1 O - 20121230 -9606 100873209 MTND5P2 - - HGNC:41919 13 - MT-ND5 pseudogene 2 pseudo MTND5P2 MT-ND5 pseudogene 2 O - 20121230 -9606 100873210 MTND5P3 - - HGNC:42034 13 - MT-ND5 pseudogene 3 pseudo MTND5P3 MT-ND5 pseudogene 3 O - 20121230 -9606 100873211 MTND4P1 - - HGNC:42035 13 - MT-ND4 pseudogene 1 pseudo MTND4P1 MT-ND4 pseudogene 1 O - 20121230 -9606 100873212 MTND1P11 - - HGNC:42060 9 - MT-ND1 pseudogene 11 pseudo MTND1P11 MT-ND1 pseudogene 11 O - 20121230 -9606 100873213 MTND1P16 - - HGNC:42065 3 - MT-ND1 pseudogene 16 pseudo MTND1P16 MT-ND1 pseudogene 16 O - 20121230 -9606 100873214 MTND1P26 - - HGNC:42075 2 - MT-ND1 pseudogene 26 pseudo MTND1P26 MT-ND1 pseudogene 26 O - 20121230 -9606 100873215 MTND1P28 - - HGNC:42077 2 - MT-ND1 pseudogene 28 pseudo MTND1P28 MT-ND1 pseudogene 28 O - 20121230 -9606 100873216 MTND1P29 - - HGNC:42078 2 - MT-ND1 pseudogene 29 pseudo MTND1P29 MT-ND1 pseudogene 29 O - 20121230 -9606 100873217 MTND1P31 - - HGNC:42080 X - MT-ND1 pseudogene 31 pseudo MTND1P31 MT-ND1 pseudogene 31 O - 20121230 -9606 100873218 MTND1P33 - - HGNC:42082 X - MT-ND1 pseudogene 33 pseudo MTND1P33 MT-ND1 pseudogene 33 O - 20121230 -9606 100873219 MTND1P34 - - HGNC:42090 1 - MT-ND1 pseudogene 34 pseudo MTND1P34 MT-ND1 pseudogene 34 O - 20121230 -9606 100873220 MTND1P19 - - HGNC:42094 4 - MT-ND1 pseudogene 19 pseudo MTND1P19 MT-ND1 pseudogene 19 O - 20121230 -9606 100873221 MTND1P9 - - HGNC:42099 20 - MT-ND1 pseudogene 9 pseudo MTND1P9 MT-ND1 pseudogene 9 O - 20121230 -9606 100873222 MTND2P11 - - HGNC:42112 9 - MT-ND2 pseudogene 11 pseudo MTND2P11 MT-ND2 pseudogene 11 O - 20121230 -9606 100873223 MTND2P14 - - HGNC:42115 3 - MT-ND2 pseudogene 14 pseudo MTND2P14 MT-ND2 pseudogene 14 O - 20121230 -9606 100873224 MTND2P18 - - HGNC:42119 2 - MT-ND2 pseudogene 18 pseudo MTND2P18 MT-ND2 pseudogene 18 O - 20121230 -9606 100873225 MTND2P19 - - HGNC:42120 2 - MT-ND2 pseudogene 19 pseudo MTND2P19 MT-ND2 pseudogene 19 O - 20121230 -9606 100873226 MTND2P20 - - HGNC:42121 2 - MT-ND2 pseudogene 20 pseudo MTND2P20 MT-ND2 pseudogene 20 O - 20121230 -9606 100873227 MTND2P21 - - HGNC:42122 2 - MT-ND2 pseudogene 21 pseudo MTND2P21 MT-ND2 pseudogene 21 O - 20121230 -9606 100873228 MTND2P22 - - HGNC:42123 2 - MT-ND2 pseudogene 22 pseudo MTND2P22 MT-ND2 pseudogene 22 O - 20121230 -9606 100873229 MTND2P23 - - HGNC:42124 2 - MT-ND2 pseudogene 23 pseudo MTND2P23 MT-ND2 pseudogene 23 O - 20121230 -9606 100873230 MTND2P24 - - HGNC:42125 X - MT-ND2 pseudogene 24 pseudo MTND2P24 MT-ND2 pseudogene 24 O - 20121230 -9606 100873231 MTND2P25 - - HGNC:42126 X - MT-ND2 pseudogene 25 pseudo MTND2P25 MT-ND2 pseudogene 25 O - 20121230 -9606 100873232 MTND2P27 - - HGNC:42128 1 - MT-ND2 pseudogene 27 pseudo MTND2P27 MT-ND2 pseudogene 27 O - 20121230 -9606 100873233 MTND2P29 - - HGNC:42130 1 - MT-ND2 pseudogene 29 pseudo MTND2P29 MT-ND2 pseudogene 29 O - 20121230 -9606 100873234 MTND2P30 - - HGNC:42131 1 - MT-ND2 pseudogene 30 pseudo MTND2P30 MT-ND2 pseudogene 30 O - 20121230 -9606 100873235 MTND2P31 - - HGNC:42132 4 - MT-ND2 pseudogene 31 pseudo MTND2P31 MT-ND2 pseudogene 31 O - 20121230 -9606 100873236 MTND2P33 - - HGNC:42134 4 - MT-ND2 pseudogene 33 pseudo MTND2P33 MT-ND2 pseudogene 33 O - 20121230 -9606 100873237 MTND2P32 - - HGNC:42139 8 - MT-ND2 pseudogene 32 pseudo MTND2P32 MT-ND2 pseudogene 32 O - 20121230 -9606 100873238 MTND2P10 - - HGNC:42140 8 - MT-ND2 pseudogene 10 pseudo MTND2P10 MT-ND2 pseudogene 10 O - 20121230 -9606 100873239 MTND3P10 - - HGNC:42150 2 - MT-ND3 pseudogene 10 pseudo MTND3P10 MT-ND3 pseudogene 10 O - 20121230 -9606 100873240 MTND4P15 - - HGNC:42202 9 - MT-ND4 pseudogene 15 pseudo MTND4P15 MT-ND4 pseudogene 15 O - 20121230 -9606 100873241 MTND4P16 - - HGNC:42203 3 - MT-ND4 pseudogene 16 pseudo MTND4P16 MT-ND4 pseudogene 16 O - 20121230 -9606 100873242 MTND4P17 - - HGNC:42204 3 - MT-ND4 pseudogene 17 pseudo MTND4P17 MT-ND4 pseudogene 17 O - 20121230 -9606 100873243 MTND4P21 - - HGNC:42208 2 - MT-ND4 pseudogene 21 pseudo MTND4P21 MT-ND4 pseudogene 21 O - 20121230 -9606 100873244 MTND4P22 - - HGNC:42209 2 - MT-ND4 pseudogene 22 pseudo MTND4P22 MT-ND4 pseudogene 22 O - 20121230 -9606 100873245 MTND4P23 - - HGNC:42210 2 - MT-ND4 pseudogene 23 pseudo MTND4P23 MT-ND4 pseudogene 23 O - 20121230 -9606 100873246 MTND4P25 - - HGNC:42212 2 - MT-ND4 pseudogene 25 pseudo MTND4P25 MT-ND4 pseudogene 25 O - 20121230 -9606 100873247 MTND4P26 - - HGNC:42213 2 - MT-ND4 pseudogene 26 pseudo MTND4P26 MT-ND4 pseudogene 26 O - 20121230 -9606 100873248 MTND4P27 - - HGNC:42214 2 - MT-ND4 pseudogene 27 pseudo MTND4P27 MT-ND4 pseudogene 27 O - 20121230 -9606 100873249 MTND4P28 - - HGNC:42215 2 - MT-ND4 pseudogene 28 pseudo MTND4P28 MT-ND4 pseudogene 28 O - 20121230 -9606 100873250 MTND4P29 - - HGNC:42216 2 - MT-ND4 pseudogene 29 pseudo MTND4P29 MT-ND4 pseudogene 29 O - 20121230 -9606 100873251 MTND4P30 - - HGNC:42217 2 - MT-ND4 pseudogene 30 pseudo MTND4P30 MT-ND4 pseudogene 30 O - 20121230 -9606 100873252 MTND4P31 - - HGNC:42218 X - MT-ND4 pseudogene 31 pseudo MTND4P31 MT-ND4 pseudogene 31 O - 20121230 -9606 100873253 MTND4P32 - - HGNC:42219 X - MT-ND4 pseudogene 32 pseudo MTND4P32 MT-ND4 pseudogene 32 O - 20121230 -9606 100873254 MTND4P24 - - HGNC:42220 X - MT-ND4 pseudogene 24 pseudo MTND4P24 MT-ND4 pseudogene 24 O - 20121230 -9606 100873255 MTND4P11 - - HGNC:42223 1 - MT-ND4 pseudogene 11 pseudo MTND4P11 MT-ND4 pseudogene 11 O - 20121230 -9606 100873256 MTND4P10 - - HGNC:42225 1 - MT-ND4 pseudogene 10 pseudo MTND4P10 MT-ND4 pseudogene 10 O - 20121230 -9606 100873257 MTND5P12 - - HGNC:42274 5 - MT-ND5 pseudogene 12 pseudo MTND5P12 MT-ND5 pseudogene 12 O - 20121230 -9606 100873258 MTND5P14 - - HGNC:42276 9 - MT-ND5 pseudogene 14 pseudo MTND5P14 MT-ND5 pseudogene 14 O - 20121230 -9606 100873259 MTND5P15 - - HGNC:42277 3 - MT-ND5 pseudogene 15 pseudo MTND5P15 MT-ND5 pseudogene 15 O - 20121230 -9606 100873260 MTND5P22 - - HGNC:42284 2 - MT-ND5 pseudogene 22 pseudo MTND5P22 MT-ND5 pseudogene 22 O - 20121230 -9606 100873261 MTND5P23 - - HGNC:42285 2 - MT-ND5 pseudogene 23 pseudo MTND5P23 MT-ND5 pseudogene 23 O - 20121230 -9606 100873262 MTND5P24 - - HGNC:42286 2 - MT-ND5 pseudogene 24 pseudo MTND5P24 MT-ND5 pseudogene 24 O - 20121230 -9606 100873263 MTND5P25 - - HGNC:42287 2 - MT-ND5 pseudogene 25 pseudo MTND5P25 MT-ND5 pseudogene 25 O - 20121230 -9606 100873264 MTND5P27 - - HGNC:42289 2 - MT-ND5 pseudogene 27 pseudo MTND5P27 MT-ND5 pseudogene 27 O - 20121230 -9606 100873265 MTND5P29 - - HGNC:42291 2 - MT-ND5 pseudogene 29 pseudo MTND5P29 MT-ND5 pseudogene 29 O - 20121230 -9606 100873266 MTND5P30 - - HGNC:42292 2 - MT-ND5 pseudogene 30 pseudo MTND5P30 MT-ND5 pseudogene 30 O - 20121230 -9606 100873267 MTND5P31 - - HGNC:42293 2 - MT-ND5 pseudogene 31 pseudo MTND5P31 MT-ND5 pseudogene 31 O - 20121230 -9606 100873268 MTND5P26 - - HGNC:42295 X - MT-ND5 pseudogene 26 pseudo MTND5P26 MT-ND5 pseudogene 26 O - 20121230 -9606 100873269 MTND5P20 - - HGNC:42300 1 - MT-ND5 pseudogene 20 pseudo MTND5P20 MT-ND5 pseudogene 20 O - 20121230 -9606 100873270 MTND5P19 - - HGNC:42301 1 - MT-ND5 pseudogene 19 pseudo MTND5P19 MT-ND5 pseudogene 19 O - 20121230 -9606 100873271 MTND5P18 - - HGNC:42302 1 - MT-ND5 pseudogene 18 pseudo MTND5P18 MT-ND5 pseudogene 18 O - 20121230 -9606 100873272 MTND5P13 - - HGNC:42304 4 - MT-ND5 pseudogene 13 pseudo MTND5P13 MT-ND5 pseudogene 13 O - 20121230 -9606 100873273 RNA5SP18 - RN5S18 HGNC:42586 1 - RNA, 5S ribosomal pseudogene 18 rRNA RNA5SP18 RNA, 5S ribosomal pseudogene 18 O - 20121021 -9606 100873274 RNA5SP19 - RN5S19 HGNC:42587 1 - RNA, 5S ribosomal pseudogene 19 rRNA RNA5SP19 RNA, 5S ribosomal pseudogene 19 O - 20121021 -9606 100873275 RNA5SP20 - RN5S20 HGNC:42588 1 - RNA, 5S ribosomal pseudogene 20 rRNA RNA5SP20 RNA, 5S ribosomal pseudogene 20 O - 20121021 -9606 100873276 RNA5SP21 - RN5S21 HGNC:42589 1 - RNA, 5S ribosomal pseudogene 21 rRNA RNA5SP21 RNA, 5S ribosomal pseudogene 21 O - 20121021 -9606 100873277 RNA5SP22 - RN5S22 HGNC:42590 1 - RNA, 5S ribosomal pseudogene 22 rRNA RNA5SP22 RNA, 5S ribosomal pseudogene 22 O - 20121021 -9606 100873278 RNA5SP23 - RN5S23 HGNC:42591 1 - RNA, 5S ribosomal pseudogene 23 rRNA RNA5SP23 RNA, 5S ribosomal pseudogene 23 O - 20121021 -9606 100873279 RNA5SP40 - RN5S40 HGNC:42816 1 - RNA, 5S ribosomal pseudogene 40 rRNA RNA5SP40 RNA, 5S ribosomal pseudogene 40 O - 20121021 -9606 100873280 RNA5SP41 - RN5S41 HGNC:42817 1 - RNA, 5S ribosomal pseudogene 41 rRNA RNA5SP41 RNA, 5S ribosomal pseudogene 41 O - 20121021 -9606 100873281 RNA5SP42 - RN5S42 HGNC:42818 1 - RNA, 5S ribosomal pseudogene 42 rRNA RNA5SP42 RNA, 5S ribosomal pseudogene 42 O - 20121021 -9606 100873282 RNA5SP43 - RN5S43 HGNC:42819 1 - RNA, 5S ribosomal pseudogene 43 rRNA RNA5SP43 RNA, 5S ribosomal pseudogene 43 O - 20121021 -9606 100873283 RNA5SP44 - RN5S44 HGNC:42820 1 - RNA, 5S ribosomal pseudogene 44 rRNA RNA5SP44 RNA, 5S ribosomal pseudogene 44 O - 20121021 -9606 100873284 RNA5SP45 - RN5S45 HGNC:42821 1 - RNA, 5S ribosomal pseudogene 45 rRNA RNA5SP45 RNA, 5S ribosomal pseudogene 45 O - 20121021 -9606 100873285 RNA5SP46 - RN5S46 HGNC:42822 1 - RNA, 5S ribosomal pseudogene 46 rRNA RNA5SP46 RNA, 5S ribosomal pseudogene 46 O - 20121021 -9606 100873286 RNA5SP47 - RN5S47 HGNC:42823 1 - RNA, 5S ribosomal pseudogene 47 rRNA RNA5SP47 RNA, 5S ribosomal pseudogene 47 O - 20121021 -9606 100873287 RNA5SP48 - RN5S48 HGNC:42824 1 - RNA, 5S ribosomal pseudogene 48 rRNA RNA5SP48 RNA, 5S ribosomal pseudogene 48 O - 20121021 -9606 100873288 RNA5SP49 - RN5S49 HGNC:42825 1 - RNA, 5S ribosomal pseudogene 49 rRNA RNA5SP49 RNA, 5S ribosomal pseudogene 49 O - 20121021 -9606 100873289 RNA5SP51 - RN5S51 HGNC:42828 1 - RNA, 5S ribosomal pseudogene 51 rRNA RNA5SP51 RNA, 5S ribosomal pseudogene 51 O - 20121021 -9606 100873290 RNA5SP52 - RN5S52 HGNC:42829 1 - RNA, 5S ribosomal pseudogene 52 rRNA RNA5SP52 RNA, 5S ribosomal pseudogene 52 O - 20121021 -9606 100873291 RNA5SP53 - RN5S53 HGNC:42830 1 - RNA, 5S ribosomal pseudogene 53 rRNA RNA5SP53 RNA, 5S ribosomal pseudogene 53 O - 20121021 -9606 100873292 RNA5SP54 - RN5S54 HGNC:42831 1 - RNA, 5S ribosomal pseudogene 54 rRNA RNA5SP54 RNA, 5S ribosomal pseudogene 54 O - 20121021 -9606 100873293 RNA5SP55 - RN5S55 HGNC:42832 1 - RNA, 5S ribosomal pseudogene 55 rRNA RNA5SP55 RNA, 5S ribosomal pseudogene 55 O - 20121021 -9606 100873294 RNA5SP56 - RN5S56 HGNC:42833 1 - RNA, 5S ribosomal pseudogene 56 rRNA RNA5SP56 RNA, 5S ribosomal pseudogene 56 O - 20121021 -9606 100873295 RNA5SP60 - RN5S60 HGNC:42837 1 - RNA, 5S ribosomal pseudogene 60 rRNA RNA5SP60 RNA, 5S ribosomal pseudogene 60 O - 20121021 -9606 100873296 RNA5SP61 - RN5S61 HGNC:42838 1 - RNA, 5S ribosomal pseudogene 61 rRNA RNA5SP61 RNA, 5S ribosomal pseudogene 61 O - 20121021 -9606 100873297 RNA5SP62 - RN5S62 HGNC:42839 1 - RNA, 5S ribosomal pseudogene 62 rRNA RNA5SP62 RNA, 5S ribosomal pseudogene 62 O - 20121021 -9606 100873298 RNA5SP63 - RN5S63 HGNC:42840 1 - RNA, 5S ribosomal pseudogene 63 rRNA RNA5SP63 RNA, 5S ribosomal pseudogene 63 O - 20121021 -9606 100873299 RNA5SP64 - RN5S64 HGNC:42841 1 - RNA, 5S ribosomal pseudogene 64 rRNA RNA5SP64 RNA, 5S ribosomal pseudogene 64 O - 20121021 -9606 100873300 RNA5SP65 - RN5S65 HGNC:42842 1 - RNA, 5S ribosomal pseudogene 65 rRNA RNA5SP65 RNA, 5S ribosomal pseudogene 65 O - 20121021 -9606 100873301 RNA5SP66 - RN5S66 HGNC:42843 1 - RNA, 5S ribosomal pseudogene 66 rRNA RNA5SP66 RNA, 5S ribosomal pseudogene 66 O - 20121021 -9606 100873302 RNA5SP67 - RN5S67 HGNC:42844 1 - RNA, 5S ribosomal pseudogene 67 rRNA RNA5SP67 RNA, 5S ribosomal pseudogene 67 O - 20121021 -9606 100873303 RNA5SP68 - RN5S68 HGNC:42845 1 - RNA, 5S ribosomal pseudogene 68 rRNA RNA5SP68 RNA, 5S ribosomal pseudogene 68 O - 20121021 -9606 100873304 RNA5SP69 - RN5S69 HGNC:42846 1 - RNA, 5S ribosomal pseudogene 69 rRNA RNA5SP69 RNA, 5S ribosomal pseudogene 69 O - 20121021 -9606 100873305 RNA5SP71 - RN5S71 HGNC:42848 1 - RNA, 5S ribosomal pseudogene 71 rRNA RNA5SP71 RNA, 5S ribosomal pseudogene 71 O - 20121021 -9606 100873306 RNA5SP72 - RN5S72 HGNC:42849 1 - RNA, 5S ribosomal pseudogene 72 rRNA RNA5SP72 RNA, 5S ribosomal pseudogene 72 O - 20121021 -9606 100873307 RNA5SP73 - RN5S73 HGNC:42850 1 - RNA, 5S ribosomal pseudogene 73 rRNA RNA5SP73 RNA, 5S ribosomal pseudogene 73 O - 20121021 -9606 100873308 RNA5SP74 - RN5S74 HGNC:42851 1 - RNA, 5S ribosomal pseudogene 74 rRNA RNA5SP74 RNA, 5S ribosomal pseudogene 74 O - 20121021 -9606 100873309 RNA5SP75 - RN5S75 HGNC:42852 1 - RNA, 5S ribosomal pseudogene 75 rRNA RNA5SP75 RNA, 5S ribosomal pseudogene 75 O - 20121021 -9606 100873310 RNA5SP76 - RN5S76 HGNC:42853 1 - RNA, 5S ribosomal pseudogene 76 rRNA RNA5SP76 RNA, 5S ribosomal pseudogene 76 O - 20121021 -9606 100873311 RNA5SP77 - RN5S77 HGNC:42854 1 - RNA, 5S ribosomal pseudogene 77 rRNA RNA5SP77 RNA, 5S ribosomal pseudogene 77 O - 20121021 -9606 100873312 RNA5SP78 - RN5S78 HGNC:42855 1 - RNA, 5S ribosomal pseudogene 78 rRNA RNA5SP78 RNA, 5S ribosomal pseudogene 78 O - 20121021 -9606 100873313 RNA5SP79 - RN5S79 HGNC:42856 1 - RNA, 5S ribosomal pseudogene 79 rRNA RNA5SP79 RNA, 5S ribosomal pseudogene 79 O - 20121021 -9606 100873314 RNA5SP80 - RN5S80 HGNC:42857 1 - RNA, 5S ribosomal pseudogene 80 rRNA RNA5SP80 RNA, 5S ribosomal pseudogene 80 O - 20121021 -9606 100873315 RNA5SP81 - RN5S81 HGNC:42858 1 - RNA, 5S ribosomal pseudogene 81 rRNA RNA5SP81 RNA, 5S ribosomal pseudogene 81 O - 20121021 -9606 100873316 RNA5SP82 - RN5S82 HGNC:42859 1 - RNA, 5S ribosomal pseudogene 82 rRNA RNA5SP82 RNA, 5S ribosomal pseudogene 82 O - 20121021 -9606 100873317 RNA5SP84 - RN5S84 HGNC:42882 2 - RNA, 5S ribosomal pseudogene 84 rRNA RNA5SP84 RNA, 5S ribosomal pseudogene 84 O - 20121021 -9606 100873318 RNA5SP85 - RN5S85 HGNC:42883 2 - RNA, 5S ribosomal pseudogene 85 rRNA RNA5SP85 RNA, 5S ribosomal pseudogene 85 O - 20121021 -9606 100873319 RNA5SP86 - RN5S86 HGNC:42884 2 - RNA, 5S ribosomal pseudogene 86 rRNA RNA5SP86 RNA, 5S ribosomal pseudogene 86 O - 20121021 -9606 100873320 RNA5SP87 - RN5S87 HGNC:42885 2 - RNA, 5S ribosomal pseudogene 87 rRNA RNA5SP87 RNA, 5S ribosomal pseudogene 87 O - 20121021 -9606 100873321 RNA5SP88 - RN5S88 HGNC:42886 2 - RNA, 5S ribosomal pseudogene 88 rRNA RNA5SP88 RNA, 5S ribosomal pseudogene 88 O - 20121021 -9606 100873322 RNA5SP89 - RN5S89 HGNC:42887 2 - RNA, 5S ribosomal pseudogene 89 rRNA RNA5SP89 RNA, 5S ribosomal pseudogene 89 O - 20121021 -9606 100873323 RNA5SP90 - RN5S90 HGNC:42888 2 - RNA, 5S ribosomal pseudogene 90 rRNA RNA5SP90 RNA, 5S ribosomal pseudogene 90 O - 20121021 -9606 100873324 RNA5SP91 - RN5S91 HGNC:42889 2 - RNA, 5S ribosomal pseudogene 91 rRNA RNA5SP91 RNA, 5S ribosomal pseudogene 91 O - 20121021 -9606 100873325 RNA5SP92 - RN5S92 HGNC:42890 2 - RNA, 5S ribosomal pseudogene 92 rRNA RNA5SP92 RNA, 5S ribosomal pseudogene 92 O - 20121021 -9606 100873326 RNA5SP93 - RN5S93 HGNC:42891 2 - RNA, 5S ribosomal pseudogene 93 rRNA RNA5SP93 RNA, 5S ribosomal pseudogene 93 O - 20121021 -9606 100873327 RNA5SP94 - RN5S94 HGNC:42892 2 - RNA, 5S ribosomal pseudogene 94 rRNA RNA5SP94 RNA, 5S ribosomal pseudogene 94 O - 20121021 -9606 100873328 RNA5SP95 - RN5S95 HGNC:42893 2 - RNA, 5S ribosomal pseudogene 95 rRNA RNA5SP95 RNA, 5S ribosomal pseudogene 95 O - 20121021 -9606 100873329 RNA5SP96 - RN5S96 HGNC:42894 2 - RNA, 5S ribosomal pseudogene 96 rRNA RNA5SP96 RNA, 5S ribosomal pseudogene 96 O - 20121021 -9606 100873330 RNA5SP97 - RN5S97 HGNC:42895 2 - RNA, 5S ribosomal pseudogene 97 rRNA RNA5SP97 RNA, 5S ribosomal pseudogene 97 O - 20121021 -9606 100873331 RNA5SP98 - RN5S98 HGNC:42896 2 - RNA, 5S ribosomal pseudogene 98 rRNA RNA5SP98 RNA, 5S ribosomal pseudogene 98 O - 20121021 -9606 100873332 MTND6P21 - - HGNC:39639 21 - MT-ND6 pseudogene 21 pseudo MTND6P21 MT-ND6 pseudogene 21 O - 20121230 -9606 100873333 SEPT2P1 - - HGNC:40017 1 - septin 2 pseudogene 1 pseudo SEPT2P1 septin 2 pseudogene 1 O - 20121230 -9606 100873334 RNA5-8SP3 - RN5-8S3 HGNC:41957 9 - RNA, 5.8S ribosomal pseudogene 3 rRNA RNA5-8SP3 RNA, 5.8S ribosomal pseudogene 3 O - 20121021 -9606 100873335 RNA5-8SP5 - RN5-8S5 HGNC:41959 2 - RNA, 5.8S ribosomal pseudogene 5 rRNA RNA5-8SP5 RNA, 5.8S ribosomal pseudogene 5 O - 20121021 -9606 100873336 RNA5-8SP6 - RN5-8S6 HGNC:41960 Y - RNA, 5.8S ribosomal pseudogene 6 rRNA RNA5-8SP6 RNA, 5.8S ribosomal pseudogene 6 O - 20121021 -9606 100873337 MTND1P14 - - HGNC:42063 17 - MT-ND1 pseudogene 14 pseudo MTND1P14 MT-ND1 pseudogene 14 O - 20121230 -9606 100873338 MTND1P18 - - HGNC:42067 10 - MT-ND1 pseudogene 18 pseudo MTND1P18 MT-ND1 pseudogene 18 O - 20121230 -9606 100873339 MTND1P20 - - HGNC:42069 10 - MT-ND1 pseudogene 20 pseudo MTND1P20 MT-ND1 pseudogene 20 O - 20121230 -9606 100873340 MTND1P21 - - HGNC:42070 10 - MT-ND1 pseudogene 21 pseudo MTND1P21 MT-ND1 pseudogene 21 O - 20121230 -9606 100873341 MTND1P24 - - HGNC:42073 12 - MT-ND1 pseudogene 24 pseudo MTND1P24 MT-ND1 pseudogene 24 O - 20121230 -9606 100873342 MTND1P17 - - HGNC:42095 22 - MT-ND1 pseudogene 17 pseudo MTND1P17 MT-ND1 pseudogene 17 O - 20121230 -9606 100873343 MTND1P10 - - HGNC:42097 22 - MT-ND1 pseudogene 10 pseudo MTND1P10 MT-ND1 pseudogene 10 O - 20121230 -9606 100873344 MTND2P12 - - HGNC:42113 17 - MT-ND2 pseudogene 12 pseudo MTND2P12 MT-ND2 pseudogene 12 O - 20121230 -9606 100873345 MTND2P13 - - HGNC:42114 17 - MT-ND2 pseudogene 13 pseudo MTND2P13 MT-ND2 pseudogene 13 O - 20121230 -9606 100873346 MTND2P15 - - HGNC:42116 10 - MT-ND2 pseudogene 15 pseudo MTND2P15 MT-ND2 pseudogene 15 O - 20121230 -9606 100873347 MTND2P16 - - HGNC:42117 10 - MT-ND2 pseudogene 16 pseudo MTND2P16 MT-ND2 pseudogene 16 O - 20121230 -9606 100873348 MTND2P17 - - HGNC:42118 12 - MT-ND2 pseudogene 17 pseudo MTND2P17 MT-ND2 pseudogene 17 O - 20121230 -9606 100873349 MTND2P26 - - HGNC:42127 11 - MT-ND2 pseudogene 26 pseudo MTND2P26 MT-ND2 pseudogene 26 O - 20121230 -9606 100873350 MTND4P18 - - HGNC:42205 10 - MT-ND4 pseudogene 18 pseudo MTND4P18 MT-ND4 pseudogene 18 O - 20121230 -9606 100873351 MTND4P19 - - HGNC:42206 10 - MT-ND4 pseudogene 19 pseudo MTND4P19 MT-ND4 pseudogene 19 O - 20121230 -9606 100873352 MTND4P20 - - HGNC:42207 10 - MT-ND4 pseudogene 20 pseudo MTND4P20 MT-ND4 pseudogene 20 O - 20121230 -9606 100873353 MTND5P17 - - HGNC:42279 10 - MT-ND5 pseudogene 17 pseudo MTND5P17 MT-ND5 pseudogene 17 O - 20121230 -9606 100873354 MTND5P21 - - HGNC:42296 11 - MT-ND5 pseudogene 21 pseudo MTND5P21 MT-ND5 pseudogene 21 O - 20121230 -9606 100873355 TEKT4P3 - - HGNC:42330 2 - tektin 4 pseudogene 3 pseudo TEKT4P3 tektin 4 pseudogene 3 O - 20121230 -9606 100873356 RNA5SP24 - RN5S24 HGNC:42600 13 - RNA, 5S ribosomal pseudogene 24 rRNA RNA5SP24 RNA, 5S ribosomal pseudogene 24 O - 20121021 -9606 100873357 RNA5SP25 - RN5S25 HGNC:42601 13 - RNA, 5S ribosomal pseudogene 25 rRNA RNA5SP25 RNA, 5S ribosomal pseudogene 25 O - 20121021 -9606 100873358 RNA5SP26 - RN5S26 HGNC:42602 13 - RNA, 5S ribosomal pseudogene 26 rRNA RNA5SP26 RNA, 5S ribosomal pseudogene 26 O - 20121021 -9606 100873359 RNA5SP27 - RN5S27 HGNC:42603 13 - RNA, 5S ribosomal pseudogene 27 rRNA RNA5SP27 RNA, 5S ribosomal pseudogene 27 O - 20121021 -9606 100873360 RNA5SP28 - RN5S28 HGNC:42604 13 - RNA, 5S ribosomal pseudogene 28 rRNA RNA5SP28 RNA, 5S ribosomal pseudogene 28 O - 20121021 -9606 100873361 RNA5SP29 - RN5S29 HGNC:42605 13 - RNA, 5S ribosomal pseudogene 29 rRNA RNA5SP29 RNA, 5S ribosomal pseudogene 29 O - 20121021 -9606 100873362 RNA5SP30 - RN5S30 HGNC:42606 13 - RNA, 5S ribosomal pseudogene 30 rRNA RNA5SP30 RNA, 5S ribosomal pseudogene 30 O - 20121021 -9606 100873363 RNA5SP31 - RN5S31 HGNC:42607 13 - RNA, 5S ribosomal pseudogene 31 rRNA RNA5SP31 RNA, 5S ribosomal pseudogene 31 O - 20121021 -9606 100873364 RNA5SP32 - RN5S32 HGNC:42608 13 - RNA, 5S ribosomal pseudogene 32 rRNA RNA5SP32 RNA, 5S ribosomal pseudogene 32 O - 20121021 -9606 100873365 RNA5SP33 - RN5S33 HGNC:42609 13 - RNA, 5S ribosomal pseudogene 33 rRNA RNA5SP33 RNA, 5S ribosomal pseudogene 33 O - 20121021 -9606 100873366 RNA5SP34 - RN5S34 HGNC:42610 13 - RNA, 5S ribosomal pseudogene 34 rRNA RNA5SP34 RNA, 5S ribosomal pseudogene 34 O - 20121021 -9606 100873367 RNA5SP35 - RN5S35 HGNC:42611 13 - RNA, 5S ribosomal pseudogene 35 rRNA RNA5SP35 RNA, 5S ribosomal pseudogene 35 O - 20121021 -9606 100873368 RNA5SP36 - RN5S36 HGNC:42612 13 - RNA, 5S ribosomal pseudogene 36 rRNA RNA5SP36 RNA, 5S ribosomal pseudogene 36 O - 20121021 -9606 100873369 RNA5SP37 - RN5S37 HGNC:42613 13 - RNA, 5S ribosomal pseudogene 37 rRNA RNA5SP37 RNA, 5S ribosomal pseudogene 37 O - 20121021 -9606 100873370 RNA5SP38 - RN5S38 HGNC:42614 13 - RNA, 5S ribosomal pseudogene 38 rRNA RNA5SP38 RNA, 5S ribosomal pseudogene 38 O - 20121021 -9606 100873371 RNA5SP39 - RN5S39 HGNC:42615 13 - RNA, 5S ribosomal pseudogene 39 rRNA RNA5SP39 RNA, 5S ribosomal pseudogene 39 O - 20121021 -9606 100873372 RNA5SP101 - RN5S101 HGNC:42899 2 - RNA, 5S ribosomal pseudogene 101 rRNA RNA5SP101 RNA, 5S ribosomal pseudogene 101 O - 20121021 -9606 100873373 RNA5SP102 - RN5S102 HGNC:42900 2 - RNA, 5S ribosomal pseudogene 102 rRNA RNA5SP102 RNA, 5S ribosomal pseudogene 102 O - 20121021 -9606 100873374 RNA5SP103 - RN5S103 HGNC:42901 2 - RNA, 5S ribosomal pseudogene 103 rRNA RNA5SP103 RNA, 5S ribosomal pseudogene 103 O - 20121021 -9606 100873375 RNA5SP104 - RN5S104 HGNC:42902 2 - RNA, 5S ribosomal pseudogene 104 rRNA RNA5SP104 RNA, 5S ribosomal pseudogene 104 O - 20121021 -9606 100873376 RNA5SP105 - RN5S105 HGNC:42903 2 - RNA, 5S ribosomal pseudogene 105 rRNA RNA5SP105 RNA, 5S ribosomal pseudogene 105 O - 20121021 -9606 100873377 RNA5SP107 - RN5S107 HGNC:42905 2 - RNA, 5S ribosomal pseudogene 107 rRNA RNA5SP107 RNA, 5S ribosomal pseudogene 107 O - 20121021 -9606 100873378 RNA5SP108 - RN5S108 HGNC:42906 2 - RNA, 5S ribosomal pseudogene 108 rRNA RNA5SP108 RNA, 5S ribosomal pseudogene 108 O - 20121021 -9606 100873379 RNA5SP109 - RN5S109 HGNC:42907 2 - RNA, 5S ribosomal pseudogene 109 rRNA RNA5SP109 RNA, 5S ribosomal pseudogene 109 O - 20121021 -9606 100873380 RNA5SP110 - RN5S110 HGNC:42908 2 - RNA, 5S ribosomal pseudogene 110 rRNA RNA5SP110 RNA, 5S ribosomal pseudogene 110 O - 20121021 -9606 100873381 RNA5SP111 - RN5S111 HGNC:42909 2 - RNA, 5S ribosomal pseudogene 111 rRNA RNA5SP111 RNA, 5S ribosomal pseudogene 111 O - 20121021 -9606 100873382 RNA5SP112 - RN5S112 HGNC:42910 2 - RNA, 5S ribosomal pseudogene 112 rRNA RNA5SP112 RNA, 5S ribosomal pseudogene 112 O - 20121021 -9606 100873383 RNA5SP113 - RN5S113 HGNC:42911 2 - RNA, 5S ribosomal pseudogene 113 rRNA RNA5SP113 RNA, 5S ribosomal pseudogene 113 O - 20121021 -9606 100873384 RNA5SP114 - RN5S114 HGNC:42912 2 - RNA, 5S ribosomal pseudogene 114 rRNA RNA5SP114 RNA, 5S ribosomal pseudogene 114 O - 20121021 -9606 100873385 RNA5SP115 - RN5S115 HGNC:42913 2 - RNA, 5S ribosomal pseudogene 115 rRNA RNA5SP115 RNA, 5S ribosomal pseudogene 115 O - 20121021 -9606 100873386 RNA5SP116 - RN5S116 HGNC:42914 2 - RNA, 5S ribosomal pseudogene 116 rRNA RNA5SP116 RNA, 5S ribosomal pseudogene 116 O - 20121021 -9606 100873387 RNA5SP117 - RN5S117 HGNC:42915 2 - RNA, 5S ribosomal pseudogene 117 rRNA RNA5SP117 RNA, 5S ribosomal pseudogene 117 O - 20121021 -9606 100873388 RNA5SP118 - RN5S118 HGNC:42916 2 - RNA, 5S ribosomal pseudogene 118 rRNA RNA5SP118 RNA, 5S ribosomal pseudogene 118 O - 20121021 -9606 100873389 RNA5SP119 - RN5S119 HGNC:42917 2 - RNA, 5S ribosomal pseudogene 119 rRNA RNA5SP119 RNA, 5S ribosomal pseudogene 119 O - 20121021 -9606 100873390 RNA5SP120 - RN5S120 HGNC:42918 2 - RNA, 5S ribosomal pseudogene 120 rRNA RNA5SP120 RNA, 5S ribosomal pseudogene 120 O - 20121021 -9606 100873391 RNA5SP121 - RN5S121 HGNC:42919 2 - RNA, 5S ribosomal pseudogene 121 rRNA RNA5SP121 RNA, 5S ribosomal pseudogene 121 O - 20121021 -9606 100873392 RNA5SP122 - RN5S122 HGNC:42920 2 - RNA, 5S ribosomal pseudogene 122 rRNA RNA5SP122 RNA, 5S ribosomal pseudogene 122 O - 20121021 -9606 100873393 RNA5SP123 - RN5S123 HGNC:43023 3 - RNA, 5S ribosomal pseudogene 123 rRNA RNA5SP123 RNA, 5S ribosomal pseudogene 123 O - 20121021 -9606 100873394 RNA5SP124 - RN5S124 HGNC:43024 3 - RNA, 5S ribosomal pseudogene 124 rRNA RNA5SP124 RNA, 5S ribosomal pseudogene 124 O - 20121021 -9606 100873395 RNA5SP125 - RN5S125 HGNC:43025 3 - RNA, 5S ribosomal pseudogene 125 rRNA RNA5SP125 RNA, 5S ribosomal pseudogene 125 O - 20121021 -9606 100873396 RNA5SP126 - RN5S126 HGNC:43026 3 - RNA, 5S ribosomal pseudogene 126 rRNA RNA5SP126 RNA, 5S ribosomal pseudogene 126 O - 20121021 -9606 100873397 RNA5SP127 - RN5S127 HGNC:43027 3 - RNA, 5S ribosomal pseudogene 127 rRNA RNA5SP127 RNA, 5S ribosomal pseudogene 127 O - 20121021 -9606 100873398 RNA5SP128 - RN5S128 HGNC:43028 3 - RNA, 5S ribosomal pseudogene 128 rRNA RNA5SP128 RNA, 5S ribosomal pseudogene 128 O - 20121021 -9606 100873399 RNA5SP129 - RN5S129 HGNC:43029 3 - RNA, 5S ribosomal pseudogene 129 rRNA RNA5SP129 RNA, 5S ribosomal pseudogene 129 O - 20121021 -9606 100873400 RNA5SP131 - RN5S131 HGNC:43031 3 - RNA, 5S ribosomal pseudogene 131 rRNA RNA5SP131 RNA, 5S ribosomal pseudogene 131 O - 20121021 -9606 100873401 RNA5SP132 - RN5S132 HGNC:43032 3 - RNA, 5S ribosomal pseudogene 132 rRNA RNA5SP132 RNA, 5S ribosomal pseudogene 132 O - 20121021 -9606 100873402 RNA5SP133 - RN5S133 HGNC:43033 3 - RNA, 5S ribosomal pseudogene 133 rRNA RNA5SP133 RNA, 5S ribosomal pseudogene 133 O - 20121021 -9606 100873403 RNA5SP135 - RN5S135 HGNC:43035 3 - RNA, 5S ribosomal pseudogene 135 rRNA RNA5SP135 RNA, 5S ribosomal pseudogene 135 O - 20121021 -9606 100873404 RNA5SP136 - RN5S136 HGNC:43036 3 - RNA, 5S ribosomal pseudogene 136 rRNA RNA5SP136 RNA, 5S ribosomal pseudogene 136 O - 20121021 -9606 100873405 RNA5SP137 - RN5S137 HGNC:43037 3 - RNA, 5S ribosomal pseudogene 137 rRNA RNA5SP137 RNA, 5S ribosomal pseudogene 137 O - 20121021 -9606 100873406 RNA5SP138 - RN5S138 HGNC:43038 3 - RNA, 5S ribosomal pseudogene 138 rRNA RNA5SP138 RNA, 5S ribosomal pseudogene 138 O - 20121021 -9606 100873407 RNA5SP139 - RN5S139 HGNC:43039 3 - RNA, 5S ribosomal pseudogene 139 rRNA RNA5SP139 RNA, 5S ribosomal pseudogene 139 O - 20121021 -9606 100873408 RNA5SP141 - RN5S141 HGNC:43041 3 - RNA, 5S ribosomal pseudogene 141 rRNA RNA5SP141 RNA, 5S ribosomal pseudogene 141 O - 20121021 -9606 100873409 RNA5SP142 - RN5S142 HGNC:43042 3 - RNA, 5S ribosomal pseudogene 142 rRNA RNA5SP142 RNA, 5S ribosomal pseudogene 142 O - 20121021 -9606 100873410 RNA5SP143 - RN5S143 HGNC:43043 3 - RNA, 5S ribosomal pseudogene 143 rRNA RNA5SP143 RNA, 5S ribosomal pseudogene 143 O - 20121021 -9606 100873411 RNA5SP144 - RN5S144 HGNC:43044 3 - RNA, 5S ribosomal pseudogene 144 rRNA RNA5SP144 RNA, 5S ribosomal pseudogene 144 O - 20121021 -9606 100873412 RNA5SP145 - RN5S145 HGNC:43045 3 - RNA, 5S ribosomal pseudogene 145 rRNA RNA5SP145 RNA, 5S ribosomal pseudogene 145 O - 20121021 -9606 100873413 RNA5SP146 - RN5S146 HGNC:43046 3 - RNA, 5S ribosomal pseudogene 146 rRNA RNA5SP146 RNA, 5S ribosomal pseudogene 146 O - 20121021 -9606 100873414 RNA5SP147 - RN5S147 HGNC:43047 3 - RNA, 5S ribosomal pseudogene 147 rRNA RNA5SP147 RNA, 5S ribosomal pseudogene 147 O - 20121021 -9606 100873415 RNA5SP148 - RN5S148 HGNC:43048 3 - RNA, 5S ribosomal pseudogene 148 rRNA RNA5SP148 RNA, 5S ribosomal pseudogene 148 O - 20121021 -9606 100873416 RNA5SP150 - RN5S150 HGNC:43050 3 - RNA, 5S ribosomal pseudogene 150 rRNA RNA5SP150 RNA, 5S ribosomal pseudogene 150 O - 20121021 -9606 100873417 RNA5SP151 - RN5S151 HGNC:43051 3 - RNA, 5S ribosomal pseudogene 151 rRNA RNA5SP151 RNA, 5S ribosomal pseudogene 151 O - 20121021 -9606 100873418 RNA5SP152 - RN5S152 HGNC:43052 4 - RNA, 5S ribosomal pseudogene 152 rRNA RNA5SP152 RNA, 5S ribosomal pseudogene 152 O - 20121021 -9606 100873419 RNA5SP153 - RN5S153 HGNC:43053 4 - RNA, 5S ribosomal pseudogene 153 rRNA RNA5SP153 RNA, 5S ribosomal pseudogene 153 O - 20121021 -9606 100873420 RNA5SP154 - RN5S154 HGNC:43054 4 - RNA, 5S ribosomal pseudogene 154 rRNA RNA5SP154 RNA, 5S ribosomal pseudogene 154 O - 20121021 -9606 100873421 RNA5SP155 - RN5S155 HGNC:43055 4 - RNA, 5S ribosomal pseudogene 155 rRNA RNA5SP155 RNA, 5S ribosomal pseudogene 155 O - 20121021 -9606 100873422 RNA5SP156 - RN5S156 HGNC:43056 4 - RNA, 5S ribosomal pseudogene 156 rRNA RNA5SP156 RNA, 5S ribosomal pseudogene 156 O - 20121021 -9606 100873423 RNA5SP157 - RN5S157 HGNC:43057 4 - RNA, 5S ribosomal pseudogene 157 rRNA RNA5SP157 RNA, 5S ribosomal pseudogene 157 O - 20121021 -9606 100873424 RNA5SP158 - RN5S158 HGNC:43058 4 - RNA, 5S ribosomal pseudogene 158 rRNA RNA5SP158 RNA, 5S ribosomal pseudogene 158 O - 20121021 -9606 100873425 RNA5SP159 - RN5S159 HGNC:43059 4 - RNA, 5S ribosomal pseudogene 159 rRNA RNA5SP159 RNA, 5S ribosomal pseudogene 159 O - 20121021 -9606 100873426 RNA5SP160 - RN5S160 HGNC:43060 4 - RNA, 5S ribosomal pseudogene 160 rRNA RNA5SP160 RNA, 5S ribosomal pseudogene 160 O - 20121021 -9606 100873427 RNA5SP162 - RN5S162 HGNC:43062 4 - RNA, 5S ribosomal pseudogene 162 rRNA RNA5SP162 RNA, 5S ribosomal pseudogene 162 O - 20121021 -9606 100873428 RNA5SP163 - RN5S163 HGNC:43063 4 - RNA, 5S ribosomal pseudogene 163 rRNA RNA5SP163 RNA, 5S ribosomal pseudogene 163 O - 20121021 -9606 100873429 RNA5SP164 - RN5S164 HGNC:43064 4 - RNA, 5S ribosomal pseudogene 164 rRNA RNA5SP164 RNA, 5S ribosomal pseudogene 164 O - 20121021 -9606 100873430 RNA5SP165 - RN5S165 HGNC:43065 4 - RNA, 5S ribosomal pseudogene 165 rRNA RNA5SP165 RNA, 5S ribosomal pseudogene 165 O - 20121021 -9606 100873431 RNA5SP166 - RN5S166 HGNC:43066 4 - RNA, 5S ribosomal pseudogene 166 rRNA RNA5SP166 RNA, 5S ribosomal pseudogene 166 O - 20121021 -9606 100873432 RNA5SP167 - RN5S167 HGNC:43067 4 - RNA, 5S ribosomal pseudogene 167 rRNA RNA5SP167 RNA, 5S ribosomal pseudogene 167 O - 20121021 -9606 100873433 RNA5SP168 - RN5S168 HGNC:43068 4 - RNA, 5S ribosomal pseudogene 168 rRNA RNA5SP168 RNA, 5S ribosomal pseudogene 168 O - 20121021 -9606 100873434 RNA5SP169 - RN5S169 HGNC:43069 4 - RNA, 5S ribosomal pseudogene 169 rRNA RNA5SP169 RNA, 5S ribosomal pseudogene 169 O - 20121021 -9606 100873435 RNA5SP170 - RN5S170 HGNC:43070 4 - RNA, 5S ribosomal pseudogene 170 rRNA RNA5SP170 RNA, 5S ribosomal pseudogene 170 O - 20121021 -9606 100873436 RNA5SP171 - RN5S171 HGNC:43071 4 - RNA, 5S ribosomal pseudogene 171 rRNA RNA5SP171 RNA, 5S ribosomal pseudogene 171 O - 20121021 -9606 100873437 RNA5SP173 - RN5S173 HGNC:43073 4 - RNA, 5S ribosomal pseudogene 173 rRNA RNA5SP173 RNA, 5S ribosomal pseudogene 173 O - 20121021 -9606 100873438 RNA5SP176 - RN5S176 HGNC:43076 5 - RNA, 5S ribosomal pseudogene 176 rRNA RNA5SP176 RNA, 5S ribosomal pseudogene 176 O - 20121021 -9606 100873439 RNA5SP177 - RN5S177 HGNC:43077 5 - RNA, 5S ribosomal pseudogene 177 rRNA RNA5SP177 RNA, 5S ribosomal pseudogene 177 O - 20121021 -9606 100873440 RNA5SP178 - RN5S178 HGNC:43078 5 - RNA, 5S ribosomal pseudogene 178 rRNA RNA5SP178 RNA, 5S ribosomal pseudogene 178 O - 20121021 -9606 100873441 RNA5SP179 - RN5S179 HGNC:43079 5 - RNA, 5S ribosomal pseudogene 179 rRNA RNA5SP179 RNA, 5S ribosomal pseudogene 179 O - 20121021 -9606 100873442 RNA5SP180 - RN5S180 HGNC:43080 5 - RNA, 5S ribosomal pseudogene 180 rRNA RNA5SP180 RNA, 5S ribosomal pseudogene 180 O - 20121021 -9606 100873443 RNA5SP181 - RN5S181 HGNC:43081 5 - RNA, 5S ribosomal pseudogene 181 rRNA RNA5SP181 RNA, 5S ribosomal pseudogene 181 O - 20121021 -9606 100873444 RNA5SP182 - RN5S182 HGNC:43082 5 - RNA, 5S ribosomal pseudogene 182 rRNA RNA5SP182 RNA, 5S ribosomal pseudogene 182 O - 20121021 -9606 100873445 RNA5SP183 - RN5S183 HGNC:43083 5 - RNA, 5S ribosomal pseudogene 183 rRNA RNA5SP183 RNA, 5S ribosomal pseudogene 183 O - 20121021 -9606 100873446 RNA5SP184 - RN5S184 HGNC:43084 5 - RNA, 5S ribosomal pseudogene 184 rRNA RNA5SP184 RNA, 5S ribosomal pseudogene 184 O - 20121021 -9606 100873447 RNA5SP185 - RN5S185 HGNC:43085 5 - RNA, 5S ribosomal pseudogene 185 rRNA RNA5SP185 RNA, 5S ribosomal pseudogene 185 O - 20121021 -9606 100873448 RNA5SP186 - RN5S186 HGNC:43086 5 - RNA, 5S ribosomal pseudogene 186 rRNA RNA5SP186 RNA, 5S ribosomal pseudogene 186 O - 20121021 -9606 100873449 RNA5SP187 - RN5S187 HGNC:43087 5 - RNA, 5S ribosomal pseudogene 187 rRNA RNA5SP187 RNA, 5S ribosomal pseudogene 187 O - 20121021 -9606 100873450 RNA5SP188 - RN5S188 HGNC:43088 5 - RNA, 5S ribosomal pseudogene 188 rRNA RNA5SP188 RNA, 5S ribosomal pseudogene 188 O - 20121021 -9606 100873451 RNA5SP189 - RN5S189 HGNC:43089 5 - RNA, 5S ribosomal pseudogene 189 rRNA RNA5SP189 RNA, 5S ribosomal pseudogene 189 O - 20121021 -9606 100873452 RNA5SP190 - RN5S190 HGNC:43090 5 - RNA, 5S ribosomal pseudogene 190 rRNA RNA5SP190 RNA, 5S ribosomal pseudogene 190 O - 20121021 -9606 100873453 RNA5SP191 - RN5S191 HGNC:43091 5 - RNA, 5S ribosomal pseudogene 191 rRNA RNA5SP191 RNA, 5S ribosomal pseudogene 191 O - 20121021 -9606 100873454 RNA5SP192 - RN5S192 HGNC:43092 5 - RNA, 5S ribosomal pseudogene 192 rRNA RNA5SP192 RNA, 5S ribosomal pseudogene 192 O - 20121021 -9606 100873455 RNA5SP193 - RN5S193 HGNC:43093 5 - RNA, 5S ribosomal pseudogene 193 rRNA RNA5SP193 RNA, 5S ribosomal pseudogene 193 O - 20121021 -9606 100873456 RNA5SP194 - RN5S194 HGNC:43094 5 - RNA, 5S ribosomal pseudogene 194 rRNA RNA5SP194 RNA, 5S ribosomal pseudogene 194 O - 20121021 -9606 100873457 RNA5SP195 - RN5S195 HGNC:43095 5 - RNA, 5S ribosomal pseudogene 195 rRNA RNA5SP195 RNA, 5S ribosomal pseudogene 195 O - 20121021 -9606 100873458 RNA5SP196 - RN5S196 HGNC:43096 5 - RNA, 5S ribosomal pseudogene 196 rRNA RNA5SP196 RNA, 5S ribosomal pseudogene 196 O - 20121021 -9606 100873459 RNA5SP197 - RN5S197 HGNC:43097 5 - RNA, 5S ribosomal pseudogene 197 rRNA RNA5SP197 RNA, 5S ribosomal pseudogene 197 O - 20121021 -9606 100873460 RNA5SP198 - RN5S198 HGNC:43098 5 - RNA, 5S ribosomal pseudogene 198 rRNA RNA5SP198 RNA, 5S ribosomal pseudogene 198 O - 20121021 -9606 100873461 RNA5SP200 - RN5S200 HGNC:43100 5 - RNA, 5S ribosomal pseudogene 200 rRNA RNA5SP200 RNA, 5S ribosomal pseudogene 200 O - 20121021 -9606 100873462 RNA5SP201 - RN5S201 HGNC:43101 6 - RNA, 5S ribosomal pseudogene 201 rRNA RNA5SP201 RNA, 5S ribosomal pseudogene 201 O - 20121021 -9606 100873463 RNA5SP202 - RN5S202 HGNC:43102 6 - RNA, 5S ribosomal pseudogene 202 rRNA RNA5SP202 RNA, 5S ribosomal pseudogene 202 O - 20121021 -9606 100873464 RNA5SP203 - RN5S203 HGNC:43103 6 - RNA, 5S ribosomal pseudogene 203 rRNA RNA5SP203 RNA, 5S ribosomal pseudogene 203 O - 20121021 -9606 100873465 RNA5SP204 - RN5S204 HGNC:43104 6 - RNA, 5S ribosomal pseudogene 204 rRNA RNA5SP204 RNA, 5S ribosomal pseudogene 204 O - 20121021 -9606 100873466 RNA5SP205 - RN5S205 HGNC:43105 6 - RNA, 5S ribosomal pseudogene 205 rRNA RNA5SP205 RNA, 5S ribosomal pseudogene 205 O - 20121021 -9606 100873467 RNA5SP207 - RN5S207 HGNC:43107 6 - RNA, 5S ribosomal pseudogene 207 rRNA RNA5SP207 RNA, 5S ribosomal pseudogene 207 O - 20121021 -9606 100873468 RNA5SP208 - RN5S208 HGNC:43108 6 - RNA, 5S ribosomal pseudogene 208 rRNA RNA5SP208 RNA, 5S ribosomal pseudogene 208 O - 20121021 -9606 100873469 RNA5SP209 - RN5S209 HGNC:43109 6 - RNA, 5S ribosomal pseudogene 209 rRNA RNA5SP209 RNA, 5S ribosomal pseudogene 209 O - 20121021 -9606 100873470 RNA5SP210 - RN5S210 HGNC:43110 6 - RNA, 5S ribosomal pseudogene 210 rRNA RNA5SP210 RNA, 5S ribosomal pseudogene 210 O - 20121021 -9606 100873471 RNA5SP211 - RN5S211 HGNC:43111 6 - RNA, 5S ribosomal pseudogene 211 rRNA RNA5SP211 RNA, 5S ribosomal pseudogene 211 O - 20121021 -9606 100873472 RNA5SP212 - RN5S212 HGNC:43112 6 - RNA, 5S ribosomal pseudogene 212 rRNA RNA5SP212 RNA, 5S ribosomal pseudogene 212 O - 20121021 -9606 100873473 RNA5SP213 - RN5S213 HGNC:43113 6 - RNA, 5S ribosomal pseudogene 213 rRNA RNA5SP213 RNA, 5S ribosomal pseudogene 213 O - 20121021 -9606 100873474 RNA5SP214 - RN5S214 HGNC:43114 6 - RNA, 5S ribosomal pseudogene 214 rRNA RNA5SP214 RNA, 5S ribosomal pseudogene 214 O - 20121021 -9606 100873475 RNA5SP215 - RN5S215 HGNC:43115 6 - RNA, 5S ribosomal pseudogene 215 rRNA RNA5SP215 RNA, 5S ribosomal pseudogene 215 O - 20121021 -9606 100873476 RNA5SP216 - RN5S216 HGNC:43116 6 - RNA, 5S ribosomal pseudogene 216 rRNA RNA5SP216 RNA, 5S ribosomal pseudogene 216 O - 20121021 -9606 100873477 RNA5SP217 - RN5S217 HGNC:43117 6 - RNA, 5S ribosomal pseudogene 217 rRNA RNA5SP217 RNA, 5S ribosomal pseudogene 217 O - 20121021 -9606 100873478 RNA5SP218 - RN5S218 HGNC:43118 6 - RNA, 5S ribosomal pseudogene 218 rRNA RNA5SP218 RNA, 5S ribosomal pseudogene 218 O - 20121021 -9606 100873479 RNA5SP219 - RN5S219 HGNC:43119 6 - RNA, 5S ribosomal pseudogene 219 rRNA RNA5SP219 RNA, 5S ribosomal pseudogene 219 O - 20121021 -9606 100873480 RNA5SP220 - RN5S220 HGNC:43120 6 - RNA, 5S ribosomal pseudogene 220 rRNA RNA5SP220 RNA, 5S ribosomal pseudogene 220 O - 20121021 -9606 100873481 RNA5SP222 - RN5S222 HGNC:43122 6 - RNA, 5S ribosomal pseudogene 222 rRNA RNA5SP222 RNA, 5S ribosomal pseudogene 222 O - 20121021 -9606 100873482 RNA5SP223 - RN5S223 HGNC:43123 6 - RNA, 5S ribosomal pseudogene 223 rRNA RNA5SP223 RNA, 5S ribosomal pseudogene 223 O - 20121021 -9606 100873483 RNA5SP224 - RN5S224 HGNC:43124 6 - RNA, 5S ribosomal pseudogene 224 rRNA RNA5SP224 RNA, 5S ribosomal pseudogene 224 O - 20121021 -9606 100873484 RNA5SP225 - RN5S225 HGNC:43125 6 - RNA, 5S ribosomal pseudogene 225 rRNA RNA5SP225 RNA, 5S ribosomal pseudogene 225 O - 20121021 -9606 100873485 RNA5SP227 - RN5S227 HGNC:43127 7 - RNA, 5S ribosomal pseudogene 227 rRNA RNA5SP227 RNA, 5S ribosomal pseudogene 227 O - 20121021 -9606 100873486 RNA5SP228 - RN5S228 HGNC:43128 7 - RNA, 5S ribosomal pseudogene 228 rRNA RNA5SP228 RNA, 5S ribosomal pseudogene 228 O - 20121021 -9606 100873487 RNA5SP229 - RN5S229 HGNC:43129 7 - RNA, 5S ribosomal pseudogene 229 rRNA RNA5SP229 RNA, 5S ribosomal pseudogene 229 O - 20121021 -9606 100873488 RNA5SP230 - RN5S230 HGNC:43130 7 - RNA, 5S ribosomal pseudogene 230 rRNA RNA5SP230 RNA, 5S ribosomal pseudogene 230 O - 20121021 -9606 100873489 RNA5SP231 - RN5S231 HGNC:43131 7 - RNA, 5S ribosomal pseudogene 231 rRNA RNA5SP231 RNA, 5S ribosomal pseudogene 231 O - 20121021 -9606 100873490 RNA5SP232 - RN5S232 HGNC:43132 7 - RNA, 5S ribosomal pseudogene 232 rRNA RNA5SP232 RNA, 5S ribosomal pseudogene 232 O - 20121021 -9606 100873491 RNA5SP233 - RN5S233 HGNC:43133 7 - RNA, 5S ribosomal pseudogene 233 rRNA RNA5SP233 RNA, 5S ribosomal pseudogene 233 O - 20121021 -9606 100873492 RNA5SP234 - RN5S234 HGNC:43134 7 - RNA, 5S ribosomal pseudogene 234 rRNA RNA5SP234 RNA, 5S ribosomal pseudogene 234 O - 20121021 -9606 100873493 RNA5SP235 - RN5S235 HGNC:43135 7 - RNA, 5S ribosomal pseudogene 235 rRNA RNA5SP235 RNA, 5S ribosomal pseudogene 235 O - 20121021 -9606 100873494 RNA5SP236 - RN5S236 HGNC:43136 7 - RNA, 5S ribosomal pseudogene 236 rRNA RNA5SP236 RNA, 5S ribosomal pseudogene 236 O - 20121021 -9606 100873495 RNA5SP237 - RN5S237 HGNC:43137 7 - RNA, 5S ribosomal pseudogene 237 rRNA RNA5SP237 RNA, 5S ribosomal pseudogene 237 O - 20121021 -9606 100873496 RNA5SP238 - RN5S238 HGNC:43138 7 - RNA, 5S ribosomal pseudogene 238 rRNA RNA5SP238 RNA, 5S ribosomal pseudogene 238 O - 20121021 -9606 100873497 RNA5SP239 - RN5S239 HGNC:43139 7 - RNA, 5S ribosomal pseudogene 239 rRNA RNA5SP239 RNA, 5S ribosomal pseudogene 239 O - 20121021 -9606 100873498 RNA5SP240 - RN5S240 HGNC:43140 7 - RNA, 5S ribosomal pseudogene 240 rRNA RNA5SP240 RNA, 5S ribosomal pseudogene 240 O - 20121021 -9606 100873499 RNA5SP241 - RN5S241 HGNC:43141 7 - RNA, 5S ribosomal pseudogene 241 rRNA RNA5SP241 RNA, 5S ribosomal pseudogene 241 O - 20121021 -9606 100873500 RNA5SP242 - RN5S242 HGNC:43142 7 - RNA, 5S ribosomal pseudogene 242 rRNA RNA5SP242 RNA, 5S ribosomal pseudogene 242 O - 20121021 -9606 100873501 RNA5SP245 - RN5S245 HGNC:43145 7 - RNA, 5S ribosomal pseudogene 245 rRNA RNA5SP245 RNA, 5S ribosomal pseudogene 245 O - 20121021 -9606 100873502 RNA5SP246 - RN5S246 HGNC:43146 7 - RNA, 5S ribosomal pseudogene 246 rRNA RNA5SP246 RNA, 5S ribosomal pseudogene 246 O - 20120810 -9606 100873503 RNA5SP247 - RN5S247 HGNC:43147 7 - RNA, 5S ribosomal pseudogene 247 rRNA RNA5SP247 RNA, 5S ribosomal pseudogene 247 O - 20121021 -9606 100873504 RNA5SP248 - RN5S248 HGNC:43148 7 - RNA, 5S ribosomal pseudogene 248 rRNA RNA5SP248 RNA, 5S ribosomal pseudogene 248 O - 20121021 -9606 100873505 RNA5SP249 - RN5S249 HGNC:43149 7 - RNA, 5S ribosomal pseudogene 249 rRNA RNA5SP249 RNA, 5S ribosomal pseudogene 249 O - 20121021 -9606 100873506 RNA5SP250 - RN5S250 HGNC:43150 7 - RNA, 5S ribosomal pseudogene 250 rRNA RNA5SP250 RNA, 5S ribosomal pseudogene 250 O - 20121021 -9606 100873507 RNA5SP251 - RN5S251 HGNC:43151 8 - RNA, 5S ribosomal pseudogene 251 rRNA RNA5SP251 RNA, 5S ribosomal pseudogene 251 O - 20121021 -9606 100873508 RNA5SP252 - RN5S252 HGNC:43152 8 - RNA, 5S ribosomal pseudogene 252 rRNA RNA5SP252 RNA, 5S ribosomal pseudogene 252 O - 20121021 -9606 100873509 RNA5SP255 - RN5S255 HGNC:43155 8 - RNA, 5S ribosomal pseudogene 255 rRNA RNA5SP255 RNA, 5S ribosomal pseudogene 255 O - 20121021 -9606 100873510 RNA5SP256 - RN5S256 HGNC:43156 8 - RNA, 5S ribosomal pseudogene 256 rRNA RNA5SP256 RNA, 5S ribosomal pseudogene 256 O - 20121021 -9606 100873511 RNA5SP257 - RN5S257 HGNC:43157 8 - RNA, 5S ribosomal pseudogene 257 rRNA RNA5SP257 RNA, 5S ribosomal pseudogene 257 O - 20121021 -9606 100873512 RNA5SP258 - RN5S258 HGNC:43158 8 - RNA, 5S ribosomal pseudogene 258 rRNA RNA5SP258 RNA, 5S ribosomal pseudogene 258 O - 20121021 -9606 100873513 RNA5SP259 - RN5S259 HGNC:43159 8 - RNA, 5S ribosomal pseudogene 259 rRNA RNA5SP259 RNA, 5S ribosomal pseudogene 259 O - 20121021 -9606 100873514 RNA5SP260 - RN5S260 HGNC:43160 8 - RNA, 5S ribosomal pseudogene 260 rRNA RNA5SP260 RNA, 5S ribosomal pseudogene 260 O - 20121021 -9606 100873515 RNA5SP261 - RN5S261 HGNC:43161 8 - RNA, 5S ribosomal pseudogene 261 rRNA RNA5SP261 RNA, 5S ribosomal pseudogene 261 O - 20121021 -9606 100873516 RNA5SP262 - RN5S262 HGNC:43162 8 - RNA, 5S ribosomal pseudogene 262 rRNA RNA5SP262 RNA, 5S ribosomal pseudogene 262 O - 20121021 -9606 100873517 RNA5SP264 - RN5S264 HGNC:43164 8 - RNA, 5S ribosomal pseudogene 264 rRNA RNA5SP264 RNA, 5S ribosomal pseudogene 264 O - 20121021 -9606 100873518 RNA5SP265 - RN5S265 HGNC:43165 8 - RNA, 5S ribosomal pseudogene 265 rRNA RNA5SP265 RNA, 5S ribosomal pseudogene 265 O - 20121021 -9606 100873519 RNA5SP266 - RN5S266 HGNC:43166 8 - RNA, 5S ribosomal pseudogene 266 rRNA RNA5SP266 RNA, 5S ribosomal pseudogene 266 O - 20121021 -9606 100873520 RNA5SP267 - RN5S267 HGNC:43167 8 - RNA, 5S ribosomal pseudogene 267 rRNA RNA5SP267 RNA, 5S ribosomal pseudogene 267 O - 20121021 -9606 100873521 RNA5SP268 - RN5S268 HGNC:43168 8 - RNA, 5S ribosomal pseudogene 268 rRNA RNA5SP268 RNA, 5S ribosomal pseudogene 268 O - 20121021 -9606 100873522 RNA5SP269 - RN5S269 HGNC:43169 8 - RNA, 5S ribosomal pseudogene 269 rRNA RNA5SP269 RNA, 5S ribosomal pseudogene 269 O - 20121021 -9606 100873523 RNA5SP270 - RN5S270 HGNC:43170 8 - RNA, 5S ribosomal pseudogene 270 rRNA RNA5SP270 RNA, 5S ribosomal pseudogene 270 O - 20121021 -9606 100873524 RNA5SP271 - RN5S271 HGNC:43171 8 - RNA, 5S ribosomal pseudogene 271 rRNA RNA5SP271 RNA, 5S ribosomal pseudogene 271 O - 20121021 -9606 100873525 RNA5SP272 - RN5S272 HGNC:43172 8 - RNA, 5S ribosomal pseudogene 272 rRNA RNA5SP272 RNA, 5S ribosomal pseudogene 272 O - 20121021 -9606 100873526 RNA5SP273 - RN5S273 HGNC:43173 8 - RNA, 5S ribosomal pseudogene 273 rRNA RNA5SP273 RNA, 5S ribosomal pseudogene 273 O - 20121021 -9606 100873527 RNA5SP274 - RN5S274 HGNC:43174 8 - RNA, 5S ribosomal pseudogene 274 rRNA RNA5SP274 RNA, 5S ribosomal pseudogene 274 O - 20121021 -9606 100873528 RNA5SP275 - RN5S275 HGNC:43175 8 - RNA, 5S ribosomal pseudogene 275 rRNA RNA5SP275 RNA, 5S ribosomal pseudogene 275 O - 20121021 -9606 100873529 RNA5SP276 - RN5S276 HGNC:43176 8 - RNA, 5S ribosomal pseudogene 276 rRNA RNA5SP276 RNA, 5S ribosomal pseudogene 276 O - 20121021 -9606 100873530 RNA5SP277 - RN5S277 HGNC:43177 8 - RNA, 5S ribosomal pseudogene 277 rRNA RNA5SP277 RNA, 5S ribosomal pseudogene 277 O - 20121021 -9606 100873531 RNA5SP278 - RN5S278 HGNC:43178 8 - RNA, 5S ribosomal pseudogene 278 rRNA RNA5SP278 RNA, 5S ribosomal pseudogene 278 O - 20121021 -9606 100873532 RNA5SP279 - RN5S279 HGNC:43179 9 - RNA, 5S ribosomal pseudogene 279 rRNA RNA5SP279 RNA, 5S ribosomal pseudogene 279 O - 20121021 -9606 100873533 RNA5SP280 - RN5S280 HGNC:43180 9 - RNA, 5S ribosomal pseudogene 280 rRNA RNA5SP280 RNA, 5S ribosomal pseudogene 280 O - 20121021 -9606 100873534 RNA5SP281 - RN5S281 HGNC:43181 9 - RNA, 5S ribosomal pseudogene 281 rRNA RNA5SP281 RNA, 5S ribosomal pseudogene 281 O - 20121021 -9606 100873535 RNA5SP282 - RN5S282 HGNC:43182 9 - RNA, 5S ribosomal pseudogene 282 rRNA RNA5SP282 RNA, 5S ribosomal pseudogene 282 O - 20121021 -9606 100873536 RNA5SP283 - RN5S283 HGNC:43183 9 - RNA, 5S ribosomal pseudogene 283 rRNA RNA5SP283 RNA, 5S ribosomal pseudogene 283 O - 20121021 -9606 100873537 RNA5SP284 - RN5S284 HGNC:43184 9 - RNA, 5S ribosomal pseudogene 284 rRNA RNA5SP284 RNA, 5S ribosomal pseudogene 284 O - 20121021 -9606 100873538 RNA5SP285 - RN5S285 HGNC:43185 9 - RNA, 5S ribosomal pseudogene 285 rRNA RNA5SP285 RNA, 5S ribosomal pseudogene 285 O - 20121021 -9606 100873539 RNA5SP286 - RN5S286 HGNC:43186 9 - RNA, 5S ribosomal pseudogene 286 rRNA RNA5SP286 RNA, 5S ribosomal pseudogene 286 O - 20121021 -9606 100873540 RNA5SP287 - RN5S287 HGNC:43187 9 - RNA, 5S ribosomal pseudogene 287 rRNA RNA5SP287 RNA, 5S ribosomal pseudogene 287 O - 20121021 -9606 100873541 RNA5SP288 - RN5S288 HGNC:43188 9 - RNA, 5S ribosomal pseudogene 288 rRNA RNA5SP288 RNA, 5S ribosomal pseudogene 288 O - 20121021 -9606 100873542 RNA5SP289 - RN5S289 HGNC:43189 9 - RNA, 5S ribosomal pseudogene 289 rRNA RNA5SP289 RNA, 5S ribosomal pseudogene 289 O - 20121021 -9606 100873543 RNA5SP290 - RN5S290 HGNC:43190 9 - RNA, 5S ribosomal pseudogene 290 rRNA RNA5SP290 RNA, 5S ribosomal pseudogene 290 O - 20121021 -9606 100873544 RNA5SP291 - RN5S291 HGNC:43191 9 - RNA, 5S ribosomal pseudogene 291 rRNA RNA5SP291 RNA, 5S ribosomal pseudogene 291 O - 20121021 -9606 100873545 RNA5SP292 - RN5S292 HGNC:43192 9 - RNA, 5S ribosomal pseudogene 292 rRNA RNA5SP292 RNA, 5S ribosomal pseudogene 292 O - 20121021 -9606 100873546 RNA5SP293 - RN5S293 HGNC:43193 9 - RNA, 5S ribosomal pseudogene 293 rRNA RNA5SP293 RNA, 5S ribosomal pseudogene 293 O - 20121021 -9606 100873547 RNA5SP294 - RN5S294 HGNC:43194 9 - RNA, 5S ribosomal pseudogene 294 rRNA RNA5SP294 RNA, 5S ribosomal pseudogene 294 O - 20121021 -9606 100873548 RNA5SP295 - RN5S295 HGNC:43195 9 - RNA, 5S ribosomal pseudogene 295 rRNA RNA5SP295 RNA, 5S ribosomal pseudogene 295 O - 20121021 -9606 100873549 RNA5SP296 - RN5S296 HGNC:43196 9 - RNA, 5S ribosomal pseudogene 296 rRNA RNA5SP296 RNA, 5S ribosomal pseudogene 296 O - 20121021 -9606 100873550 RNA5SP499 - RN5S499 HGNC:43399 X - RNA, 5S ribosomal pseudogene 499 rRNA RNA5SP499 RNA, 5S ribosomal pseudogene 499 O - 20121021 -9606 100873551 RNA5SP500 - RN5S500 HGNC:43400 X - RNA, 5S ribosomal pseudogene 500 rRNA RNA5SP500 RNA, 5S ribosomal pseudogene 500 O - 20121021 -9606 100873552 RNA5SP501 - RN5S501 HGNC:43401 X - RNA, 5S ribosomal pseudogene 501 rRNA RNA5SP501 RNA, 5S ribosomal pseudogene 501 O - 20121021 -9606 100873553 RNA5SP502 - RN5S502 HGNC:43402 X - RNA, 5S ribosomal pseudogene 502 rRNA RNA5SP502 RNA, 5S ribosomal pseudogene 502 O - 20121021 -9606 100873554 RNA5SP503 - RN5S503 HGNC:43403 X - RNA, 5S ribosomal pseudogene 503 rRNA RNA5SP503 RNA, 5S ribosomal pseudogene 503 O - 20121021 -9606 100873555 RNA5SP504 - RN5S504 HGNC:43404 X - RNA, 5S ribosomal pseudogene 504 rRNA RNA5SP504 RNA, 5S ribosomal pseudogene 504 O - 20121021 -9606 100873556 RNA5SP505 - RN5S505 HGNC:43405 X - RNA, 5S ribosomal pseudogene 505 rRNA RNA5SP505 RNA, 5S ribosomal pseudogene 505 O - 20121021 -9606 100873557 RNA5SP506 - RN5S506 HGNC:43406 X - RNA, 5S ribosomal pseudogene 506 rRNA RNA5SP506 RNA, 5S ribosomal pseudogene 506 O - 20121021 -9606 100873558 RNA5SP507 - RN5S507 HGNC:43407 X - RNA, 5S ribosomal pseudogene 507 rRNA RNA5SP507 RNA, 5S ribosomal pseudogene 507 O - 20121021 -9606 100873559 RNA5SP508 - RN5S508 HGNC:43408 X - RNA, 5S ribosomal pseudogene 508 rRNA RNA5SP508 RNA, 5S ribosomal pseudogene 508 O - 20121021 -9606 100873560 RNA5SP509 - RN5S509 HGNC:43409 X - RNA, 5S ribosomal pseudogene 509 rRNA RNA5SP509 RNA, 5S ribosomal pseudogene 509 O - 20121021 -9606 100873561 RNA5SP510 - RN5S510 HGNC:43410 X - RNA, 5S ribosomal pseudogene 510 rRNA RNA5SP510 RNA, 5S ribosomal pseudogene 510 O - 20121021 -9606 100873562 RNA5SP511 - RN5S511 HGNC:43411 X - RNA, 5S ribosomal pseudogene 511 rRNA RNA5SP511 RNA, 5S ribosomal pseudogene 511 O - 20121021 -9606 100873563 RNA5SP512 - RN5S512 HGNC:43412 X - RNA, 5S ribosomal pseudogene 512 rRNA RNA5SP512 RNA, 5S ribosomal pseudogene 512 O - 20121021 -9606 100873564 RNA5SP513 - RN5S513 HGNC:43413 X - RNA, 5S ribosomal pseudogene 513 rRNA RNA5SP513 RNA, 5S ribosomal pseudogene 513 O - 20121021 -9606 100873565 RNA5SP514 - RN5S514 HGNC:43414 X - RNA, 5S ribosomal pseudogene 514 rRNA RNA5SP514 RNA, 5S ribosomal pseudogene 514 O - 20121021 -9606 100873566 RNA5SP515 - RN5S515 HGNC:43415 X - RNA, 5S ribosomal pseudogene 515 rRNA RNA5SP515 RNA, 5S ribosomal pseudogene 515 O - 20121021 -9606 100873567 RNA5SP516 - RN5S516 HGNC:43416 X - RNA, 5S ribosomal pseudogene 516 rRNA RNA5SP516 RNA, 5S ribosomal pseudogene 516 O - 20121021 -9606 100873568 RNA5SP517 - RN5S517 HGNC:43417 X - RNA, 5S ribosomal pseudogene 517 rRNA RNA5SP517 RNA, 5S ribosomal pseudogene 517 O - 20121021 -9606 100873569 RNA5SP518 - RN5S518 HGNC:43418 Y - RNA, 5S ribosomal pseudogene 518 rRNA RNA5SP518 RNA, 5S ribosomal pseudogene 518 O - 20121021 -9606 100873570 RNA5SP519 - RN5S519 HGNC:43419 Y - RNA, 5S ribosomal pseudogene 519 rRNA RNA5SP519 RNA, 5S ribosomal pseudogene 519 O - 20121021 -9606 100873571 RNA5-8SP2 - RN5-8S2 HGNC:41956 16 - RNA, 5.8S ribosomal pseudogene 2 rRNA RNA5-8SP2 RNA, 5.8S ribosomal pseudogene 2 O - 20121021 -9606 100873572 RNA5-8SP4 - RN5-8S4 HGNC:41958 19 - RNA, 5.8S ribosomal pseudogene 4 rRNA RNA5-8SP4 RNA, 5.8S ribosomal pseudogene 4 O - 20121021 -9606 100873573 RNA5-8SP7 - RN5-8S7 HGNC:41962 20 - RNA, 5.8S ribosomal pseudogene 7 rRNA RNA5-8SP7 RNA, 5.8S ribosomal pseudogene 7 O - 20121021 -9606 100873574 RNA5SP299 - RN5S299 HGNC:43199 10 - RNA, 5S ribosomal pseudogene 299 rRNA RNA5SP299 RNA, 5S ribosomal pseudogene 299 O - 20121021 -9606 100873575 RNA5SP300 - RN5S300 HGNC:43200 10 - RNA, 5S ribosomal pseudogene 300 rRNA RNA5SP300 RNA, 5S ribosomal pseudogene 300 O - 20121021 -9606 100873576 RNA5SP301 - RN5S301 HGNC:43201 10 - RNA, 5S ribosomal pseudogene 301 rRNA RNA5SP301 RNA, 5S ribosomal pseudogene 301 O - 20121021 -9606 100873577 RNA5SP303 - RN5S303 HGNC:43203 10 - RNA, 5S ribosomal pseudogene 303 rRNA RNA5SP303 RNA, 5S ribosomal pseudogene 303 O - 20121021 -9606 100873578 RNA5SP304 - RN5S304 HGNC:43204 10 - RNA, 5S ribosomal pseudogene 304 rRNA RNA5SP304 RNA, 5S ribosomal pseudogene 304 O - 20121021 -9606 100873579 RNA5SP305 - RN5S305 HGNC:43205 10 - RNA, 5S ribosomal pseudogene 305 rRNA RNA5SP305 RNA, 5S ribosomal pseudogene 305 O - 20121021 -9606 100873580 RNA5SP306 - RN5S306 HGNC:43206 10 - RNA, 5S ribosomal pseudogene 306 rRNA RNA5SP306 RNA, 5S ribosomal pseudogene 306 O - 20121021 -9606 100873581 RNA5SP307 - RN5S307 HGNC:43207 10 - RNA, 5S ribosomal pseudogene 307 rRNA RNA5SP307 RNA, 5S ribosomal pseudogene 307 O - 20121021 -9606 100873582 RNA5SP308 - RN5S308 HGNC:43208 10 - RNA, 5S ribosomal pseudogene 308 rRNA RNA5SP308 RNA, 5S ribosomal pseudogene 308 O - 20121021 -9606 100873583 RNA5SP309 - RN5S309 HGNC:43209 10 - RNA, 5S ribosomal pseudogene 309 rRNA RNA5SP309 RNA, 5S ribosomal pseudogene 309 O - 20121021 -9606 100873584 RNA5SP318 - RN5S318 HGNC:43218 10 - RNA, 5S ribosomal pseudogene 318 rRNA RNA5SP318 RNA, 5S ribosomal pseudogene 318 O - 20121021 -9606 100873585 RNA5SP319 - RN5S319 HGNC:43219 10 - RNA, 5S ribosomal pseudogene 319 rRNA RNA5SP319 RNA, 5S ribosomal pseudogene 319 O - 20121021 -9606 100873586 RNA5SP320 - RN5S320 HGNC:43220 10 - RNA, 5S ribosomal pseudogene 320 rRNA RNA5SP320 RNA, 5S ribosomal pseudogene 320 O - 20121021 -9606 100873587 RNA5SP321 - RN5S321 HGNC:43221 10 - RNA, 5S ribosomal pseudogene 321 rRNA RNA5SP321 RNA, 5S ribosomal pseudogene 321 O - 20121021 -9606 100873588 RNA5SP322 - RN5S322 HGNC:43222 10 - RNA, 5S ribosomal pseudogene 322 rRNA RNA5SP322 RNA, 5S ribosomal pseudogene 322 O - 20121021 -9606 100873589 RNA5SP323 - RN5S323 HGNC:43223 10 - RNA, 5S ribosomal pseudogene 323 rRNA RNA5SP323 RNA, 5S ribosomal pseudogene 323 O - 20121021 -9606 100873590 RNA5SP324 - RN5S324 HGNC:43224 10 - RNA, 5S ribosomal pseudogene 324 rRNA RNA5SP324 RNA, 5S ribosomal pseudogene 324 O - 20121021 -9606 100873591 RNA5SP325 - RN5S325 HGNC:43225 10 - RNA, 5S ribosomal pseudogene 325 rRNA RNA5SP325 RNA, 5S ribosomal pseudogene 325 O - 20121021 -9606 100873592 RNA5SP326 - RN5S326 HGNC:43226 10 - RNA, 5S ribosomal pseudogene 326 rRNA RNA5SP326 RNA, 5S ribosomal pseudogene 326 O - 20121021 -9606 100873593 RNA5SP327 - RN5S327 HGNC:43227 10 - RNA, 5S ribosomal pseudogene 327 rRNA RNA5SP327 RNA, 5S ribosomal pseudogene 327 O - 20121021 -9606 100873594 RNA5SP328 - RN5S328 HGNC:43228 10 - RNA, 5S ribosomal pseudogene 328 rRNA RNA5SP328 RNA, 5S ribosomal pseudogene 328 O - 20121021 -9606 100873595 RNA5SP329 - RN5S329 HGNC:43229 11 - RNA, 5S ribosomal pseudogene 329 rRNA RNA5SP329 RNA, 5S ribosomal pseudogene 329 O - 20121021 -9606 100873596 RNA5SP330 - RN5S330 HGNC:43230 11 - RNA, 5S ribosomal pseudogene 330 rRNA RNA5SP330 RNA, 5S ribosomal pseudogene 330 O - 20121021 -9606 100873597 RNA5SP331 - RN5S331 HGNC:43231 11 - RNA, 5S ribosomal pseudogene 331 rRNA RNA5SP331 RNA, 5S ribosomal pseudogene 331 O - 20121021 -9606 100873598 RNA5SP332 - RN5S332 HGNC:43232 11 - RNA, 5S ribosomal pseudogene 332 rRNA RNA5SP332 RNA, 5S ribosomal pseudogene 332 O - 20121021 -9606 100873599 RNA5SP336 - RN5S336 HGNC:43236 11 - RNA, 5S ribosomal pseudogene 336 rRNA RNA5SP336 RNA, 5S ribosomal pseudogene 336 O - 20121021 -9606 100873600 RNA5SP337 - RN5S337 HGNC:43237 11 - RNA, 5S ribosomal pseudogene 337 rRNA RNA5SP337 RNA, 5S ribosomal pseudogene 337 O - 20121021 -9606 100873601 RNA5SP338 - RN5S338 HGNC:43238 11 - RNA, 5S ribosomal pseudogene 338 rRNA RNA5SP338 RNA, 5S ribosomal pseudogene 338 O - 20121021 -9606 100873602 RNA5SP339 - RN5S339 HGNC:43239 11 - RNA, 5S ribosomal pseudogene 339 rRNA RNA5SP339 RNA, 5S ribosomal pseudogene 339 O - 20121021 -9606 100873603 RNA5SP340 - RN5S340 HGNC:43240 11 - RNA, 5S ribosomal pseudogene 340 rRNA RNA5SP340 RNA, 5S ribosomal pseudogene 340 O - 20121021 -9606 100873604 RNA5SP341 - RN5S341 HGNC:43241 11 - RNA, 5S ribosomal pseudogene 341 rRNA RNA5SP341 RNA, 5S ribosomal pseudogene 341 O - 20121021 -9606 100873605 RNA5SP343 - RN5S343 HGNC:43243 11 - RNA, 5S ribosomal pseudogene 343 rRNA RNA5SP343 RNA, 5S ribosomal pseudogene 343 O - 20121021 -9606 100873606 RNA5SP344 - RN5S344 HGNC:43244 11 - RNA, 5S ribosomal pseudogene 344 rRNA RNA5SP344 RNA, 5S ribosomal pseudogene 344 O - 20121021 -9606 100873607 RNA5SP345 - RN5S345 HGNC:43245 11 - RNA, 5S ribosomal pseudogene 345 rRNA RNA5SP345 RNA, 5S ribosomal pseudogene 345 O - 20121021 -9606 100873608 RNA5SP346 - RN5S346 HGNC:43246 11 - RNA, 5S ribosomal pseudogene 346 rRNA RNA5SP346 RNA, 5S ribosomal pseudogene 346 O - 20121021 -9606 100873609 RNA5SP347 - RN5S347 HGNC:43247 11 - RNA, 5S ribosomal pseudogene 347 rRNA RNA5SP347 RNA, 5S ribosomal pseudogene 347 O - 20121021 -9606 100873610 RNA5SP348 - RN5S348 HGNC:43248 11 - RNA, 5S ribosomal pseudogene 348 rRNA RNA5SP348 RNA, 5S ribosomal pseudogene 348 O - 20121021 -9606 100873611 RNA5SP349 - RN5S349 HGNC:43249 11 - RNA, 5S ribosomal pseudogene 349 rRNA RNA5SP349 RNA, 5S ribosomal pseudogene 349 O - 20121021 -9606 100873612 RNA5SP352 - RN5S352 HGNC:43252 11 - RNA, 5S ribosomal pseudogene 352 rRNA RNA5SP352 RNA, 5S ribosomal pseudogene 352 O - 20121021 -9606 100873613 RNA5SP353 - RN5S353 HGNC:43253 12 - RNA, 5S ribosomal pseudogene 353 rRNA RNA5SP353 RNA, 5S ribosomal pseudogene 353 O - 20121021 -9606 100873614 RNA5SP354 - RN5S354 HGNC:43254 12 - RNA, 5S ribosomal pseudogene 354 rRNA RNA5SP354 RNA, 5S ribosomal pseudogene 354 O - 20121021 -9606 100873615 RNA5SP356 - RN5S356 HGNC:43256 12 - RNA, 5S ribosomal pseudogene 356 rRNA RNA5SP356 RNA, 5S ribosomal pseudogene 356 O - 20121021 -9606 100873616 RNA5SP357 - RN5S357 HGNC:43257 12 - RNA, 5S ribosomal pseudogene 357 rRNA RNA5SP357 RNA, 5S ribosomal pseudogene 357 O - 20121021 -9606 100873617 RNA5SP358 - RN5S358 HGNC:43258 12 - RNA, 5S ribosomal pseudogene 358 rRNA RNA5SP358 RNA, 5S ribosomal pseudogene 358 O - 20121021 -9606 100873618 RNA5SP359 - RN5S359 HGNC:43259 12 - RNA, 5S ribosomal pseudogene 359 rRNA RNA5SP359 RNA, 5S ribosomal pseudogene 359 O - 20121021 -9606 100873619 RNA5SP360 - RN5S360 HGNC:43260 12 - RNA, 5S ribosomal pseudogene 360 rRNA RNA5SP360 RNA, 5S ribosomal pseudogene 360 O - 20121021 -9606 100873620 RNA5SP361 - RN5S361 HGNC:43261 12 - RNA, 5S ribosomal pseudogene 361 rRNA RNA5SP361 RNA, 5S ribosomal pseudogene 361 O - 20121021 -9606 100873621 RNA5SP362 - RN5S362 HGNC:43262 12 - RNA, 5S ribosomal pseudogene 362 rRNA RNA5SP362 RNA, 5S ribosomal pseudogene 362 O - 20121021 -9606 100873622 RNA5SP363 - RN5S363 HGNC:43263 12 - RNA, 5S ribosomal pseudogene 363 rRNA RNA5SP363 RNA, 5S ribosomal pseudogene 363 O - 20121021 -9606 100873623 RNA5SP364 - RN5S364 HGNC:43264 12 - RNA, 5S ribosomal pseudogene 364 rRNA RNA5SP364 RNA, 5S ribosomal pseudogene 364 O - 20121021 -9606 100873624 RNA5SP365 - RN5S365 HGNC:43265 12 - RNA, 5S ribosomal pseudogene 365 rRNA RNA5SP365 RNA, 5S ribosomal pseudogene 365 O - 20121021 -9606 100873625 RNA5SP366 - RN5S366 HGNC:43266 12 - RNA, 5S ribosomal pseudogene 366 rRNA RNA5SP366 RNA, 5S ribosomal pseudogene 366 O - 20121021 -9606 100873626 RNA5SP367 - RN5S367 HGNC:43267 12 - RNA, 5S ribosomal pseudogene 367 rRNA RNA5SP367 RNA, 5S ribosomal pseudogene 367 O - 20121021 -9606 100873627 RNA5SP368 - RN5S368 HGNC:43268 12 - RNA, 5S ribosomal pseudogene 368 rRNA RNA5SP368 RNA, 5S ribosomal pseudogene 368 O - 20121021 -9606 100873628 RNA5SP369 - RN5S369 HGNC:43269 12 - RNA, 5S ribosomal pseudogene 369 rRNA RNA5SP369 RNA, 5S ribosomal pseudogene 369 O - 20121021 -9606 100873629 RNA5SP371 - RN5S371 HGNC:43271 12 - RNA, 5S ribosomal pseudogene 371 rRNA RNA5SP371 RNA, 5S ribosomal pseudogene 371 O - 20121021 -9606 100873630 RNA5SP372 - RN5S372 HGNC:43272 12 - RNA, 5S ribosomal pseudogene 372 rRNA RNA5SP372 RNA, 5S ribosomal pseudogene 372 O - 20121021 -9606 100873631 RNA5SP373 - RN5S373 HGNC:43273 12 - RNA, 5S ribosomal pseudogene 373 rRNA RNA5SP373 RNA, 5S ribosomal pseudogene 373 O - 20121021 -9606 100873632 RNA5SP374 - RN5S374 HGNC:43274 12 - RNA, 5S ribosomal pseudogene 374 rRNA RNA5SP374 RNA, 5S ribosomal pseudogene 374 O - 20121021 -9606 100873633 RNA5SP375 - RN5S375 HGNC:43275 12 - RNA, 5S ribosomal pseudogene 375 rRNA RNA5SP375 RNA, 5S ribosomal pseudogene 375 O - 20121021 -9606 100873634 RNA5SP378 - RN5S378 HGNC:43278 12 - RNA, 5S ribosomal pseudogene 378 rRNA RNA5SP378 RNA, 5S ribosomal pseudogene 378 O - 20121021 -9606 100873635 RNA5SP379 - RN5S379 HGNC:43279 12 - RNA, 5S ribosomal pseudogene 379 rRNA RNA5SP379 RNA, 5S ribosomal pseudogene 379 O - 20121021 -9606 100873636 RNA5SP380 - RN5S380 HGNC:43280 14 - RNA, 5S ribosomal pseudogene 380 rRNA RNA5SP380 RNA, 5S ribosomal pseudogene 380 O - 20121021 -9606 100873637 RNA5SP382 - RN5S382 HGNC:43282 14 - RNA, 5S ribosomal pseudogene 382 rRNA RNA5SP382 RNA, 5S ribosomal pseudogene 382 O - 20121021 -9606 100873638 RNA5SP383 - RN5S383 HGNC:43283 14 - RNA, 5S ribosomal pseudogene 383 rRNA RNA5SP383 RNA, 5S ribosomal pseudogene 383 O - 20121021 -9606 100873639 RNA5SP384 - RN5S384 HGNC:43284 14 - RNA, 5S ribosomal pseudogene 384 rRNA RNA5SP384 RNA, 5S ribosomal pseudogene 384 O - 20121021 -9606 100873640 RNA5SP385 - RN5S385 HGNC:43285 14 - RNA, 5S ribosomal pseudogene 385 rRNA RNA5SP385 RNA, 5S ribosomal pseudogene 385 O - 20121021 -9606 100873641 RNA5SP386 - RN5S386 HGNC:43286 14 - RNA, 5S ribosomal pseudogene 386 rRNA RNA5SP386 RNA, 5S ribosomal pseudogene 386 O - 20121021 -9606 100873642 RNA5SP388 - RN5S388 HGNC:43288 14 - RNA, 5S ribosomal pseudogene 388 rRNA RNA5SP388 RNA, 5S ribosomal pseudogene 388 O - 20121021 -9606 100873643 RNA5SP390 - RN5S390 HGNC:43290 15 - RNA, 5S ribosomal pseudogene 390 rRNA RNA5SP390 RNA, 5S ribosomal pseudogene 390 O - 20121021 -9606 100873644 RNA5SP391 - RN5S391 HGNC:43291 15 - RNA, 5S ribosomal pseudogene 391 rRNA RNA5SP391 RNA, 5S ribosomal pseudogene 391 O - 20121021 -9606 100873645 RNA5SP392 - RN5S392 HGNC:43292 15 - RNA, 5S ribosomal pseudogene 392 rRNA RNA5SP392 RNA, 5S ribosomal pseudogene 392 O - 20121021 -9606 100873646 RNA5SP393 - RN5S393 HGNC:43293 15 - RNA, 5S ribosomal pseudogene 393 rRNA RNA5SP393 RNA, 5S ribosomal pseudogene 393 O - 20121021 -9606 100873647 RNA5SP394 - RN5S394 HGNC:43294 15 - RNA, 5S ribosomal pseudogene 394 rRNA RNA5SP394 RNA, 5S ribosomal pseudogene 394 O - 20121021 -9606 100873648 RNA5SP395 - RN5S395 HGNC:43295 15 - RNA, 5S ribosomal pseudogene 395 rRNA RNA5SP395 RNA, 5S ribosomal pseudogene 395 O - 20121021 -9606 100873649 RNA5SP396 - RN5S396 HGNC:43296 15 - RNA, 5S ribosomal pseudogene 396 rRNA RNA5SP396 RNA, 5S ribosomal pseudogene 396 O - 20121021 -9606 100873650 RNA5SP397 - RN5S397 HGNC:43297 15 - RNA, 5S ribosomal pseudogene 397 rRNA RNA5SP397 RNA, 5S ribosomal pseudogene 397 O - 20121021 -9606 100873651 RNA5SP398 - RN5S398 HGNC:43298 15 - RNA, 5S ribosomal pseudogene 398 rRNA RNA5SP398 RNA, 5S ribosomal pseudogene 398 O - 20121021 -9606 100873652 RNA5SP399 - RN5S399 HGNC:43299 15 - RNA, 5S ribosomal pseudogene 399 rRNA RNA5SP399 RNA, 5S ribosomal pseudogene 399 O - 20121021 -9606 100873653 RNA5SP400 - RN5S400 HGNC:43300 15 - RNA, 5S ribosomal pseudogene 400 rRNA RNA5SP400 RNA, 5S ribosomal pseudogene 400 O - 20121021 -9606 100873654 RNA5SP401 - RN5S401 HGNC:43301 15 - RNA, 5S ribosomal pseudogene 401 rRNA RNA5SP401 RNA, 5S ribosomal pseudogene 401 O - 20121021 -9606 100873655 RNA5SP402 - RN5S402 HGNC:43302 15 - RNA, 5S ribosomal pseudogene 402 rRNA RNA5SP402 RNA, 5S ribosomal pseudogene 402 O - 20121021 -9606 100873656 RNA5SP404 - RN5S404 HGNC:43304 16 - RNA, 5S ribosomal pseudogene 404 rRNA RNA5SP404 RNA, 5S ribosomal pseudogene 404 O - 20121021 -9606 100873657 RNA5SP405 - RN5S405 HGNC:43305 16 - RNA, 5S ribosomal pseudogene 405 rRNA RNA5SP405 RNA, 5S ribosomal pseudogene 405 O - 20121021 -9606 100873658 RNA5SP406 - RN5S406 HGNC:43306 16 - RNA, 5S ribosomal pseudogene 406 rRNA RNA5SP406 RNA, 5S ribosomal pseudogene 406 O - 20121021 -9606 100873659 RNA5SP407 - RN5S407 HGNC:43307 16 - RNA, 5S ribosomal pseudogene 407 rRNA RNA5SP407 RNA, 5S ribosomal pseudogene 407 O - 20121021 -9606 100873660 RNA5SP408 - RN5S408 HGNC:43308 16 - RNA, 5S ribosomal pseudogene 408 rRNA RNA5SP408 RNA, 5S ribosomal pseudogene 408 O - 20121021 -9606 100873661 RNA5SP409 - RN5S409 HGNC:43309 16 - RNA, 5S ribosomal pseudogene 409 rRNA RNA5SP409 RNA, 5S ribosomal pseudogene 409 O - 20121021 -9606 100873662 RNA5SP410 - RN5S410 HGNC:43310 16 - RNA, 5S ribosomal pseudogene 410 rRNA RNA5SP410 RNA, 5S ribosomal pseudogene 410 O - 20121021 -9606 100873663 RNA5SP412 - RN5S412 HGNC:43312 16 - RNA, 5S ribosomal pseudogene 412 rRNA RNA5SP412 RNA, 5S ribosomal pseudogene 412 O - 20121021 -9606 100873664 RNA5SP413 - RN5S413 HGNC:43313 16 - RNA, 5S ribosomal pseudogene 413 rRNA RNA5SP413 RNA, 5S ribosomal pseudogene 413 O - 20121021 -9606 100873665 RNA5SP414 - RN5S414 HGNC:43314 16 - RNA, 5S ribosomal pseudogene 414 rRNA RNA5SP414 RNA, 5S ribosomal pseudogene 414 O - 20121021 -9606 100873666 RNA5SP415 - RN5S415 HGNC:43315 16 - RNA, 5S ribosomal pseudogene 415 rRNA RNA5SP415 RNA, 5S ribosomal pseudogene 415 O - 20121021 -9606 100873667 RNA5SP416 - RN5S416 HGNC:43316 16 - RNA, 5S ribosomal pseudogene 416 rRNA RNA5SP416 RNA, 5S ribosomal pseudogene 416 O - 20121021 -9606 100873668 RNA5SP417 - RN5S417 HGNC:43317 16 - RNA, 5S ribosomal pseudogene 417 rRNA RNA5SP417 RNA, 5S ribosomal pseudogene 417 O - 20121021 -9606 100873669 RNA5SP418 - RN5S418 HGNC:43318 16 - RNA, 5S ribosomal pseudogene 418 rRNA RNA5SP418 RNA, 5S ribosomal pseudogene 418 O - 20121021 -9606 100873670 RNA5SP419 - RN5S419 HGNC:43319 16 - RNA, 5S ribosomal pseudogene 419 rRNA RNA5SP419 RNA, 5S ribosomal pseudogene 419 O - 20121021 -9606 100873671 RNA5SP420 - RN5S420 HGNC:43320 16 - RNA, 5S ribosomal pseudogene 420 rRNA RNA5SP420 RNA, 5S ribosomal pseudogene 420 O - 20121021 -9606 100873672 RNA5SP421 - RN5S421 HGNC:43321 16 - RNA, 5S ribosomal pseudogene 421 rRNA RNA5SP421 RNA, 5S ribosomal pseudogene 421 O - 20121021 -9606 100873673 RNA5SP422 - RN5S422 HGNC:43322 16 - RNA, 5S ribosomal pseudogene 422 rRNA RNA5SP422 RNA, 5S ribosomal pseudogene 422 O - 20121021 -9606 100873674 RNA5SP423 - RN5S423 HGNC:43323 16 - RNA, 5S ribosomal pseudogene 423 rRNA RNA5SP423 RNA, 5S ribosomal pseudogene 423 O - 20121021 -9606 100873675 RNA5SP424 - RN5S424 HGNC:43324 16 - RNA, 5S ribosomal pseudogene 424 rRNA RNA5SP424 RNA, 5S ribosomal pseudogene 424 O - 20121021 -9606 100873676 RNA5SP425 - RN5S425 HGNC:43325 16 - RNA, 5S ribosomal pseudogene 425 rRNA RNA5SP425 RNA, 5S ribosomal pseudogene 425 O - 20121021 -9606 100873677 RNA5SP426 - RN5S426 HGNC:43326 16 - RNA, 5S ribosomal pseudogene 426 rRNA RNA5SP426 RNA, 5S ribosomal pseudogene 426 O - 20121021 -9606 100873678 RNA5SP427 - RN5S427 HGNC:43327 16 - RNA, 5S ribosomal pseudogene 427 rRNA RNA5SP427 RNA, 5S ribosomal pseudogene 427 O - 20121021 -9606 100873679 RNA5SP428 - RN5S428 HGNC:43328 16 - RNA, 5S ribosomal pseudogene 428 rRNA RNA5SP428 RNA, 5S ribosomal pseudogene 428 O - 20121021 -9606 100873680 RNA5SP430 - RN5S430 HGNC:43330 16 - RNA, 5S ribosomal pseudogene 430 rRNA RNA5SP430 RNA, 5S ribosomal pseudogene 430 O - 20121021 -9606 100873681 RNA5SP431 - RN5S431 HGNC:43331 16 - RNA, 5S ribosomal pseudogene 431 rRNA RNA5SP431 RNA, 5S ribosomal pseudogene 431 O - 20121021 -9606 100873682 RNA5SP432 - RN5S432 HGNC:43332 16 - RNA, 5S ribosomal pseudogene 432 rRNA RNA5SP432 RNA, 5S ribosomal pseudogene 432 O - 20121021 -9606 100873683 RNA5SP433 - RN5S433 HGNC:43333 16 - RNA, 5S ribosomal pseudogene 433 rRNA RNA5SP433 RNA, 5S ribosomal pseudogene 433 O - 20121021 -9606 100873684 RNA5SP434 - RN5S434 HGNC:43334 17 - RNA, 5S ribosomal pseudogene 434 rRNA RNA5SP434 RNA, 5S ribosomal pseudogene 434 O - 20121021 -9606 100873685 RNA5SP436 - RN5S436 HGNC:43336 17 - RNA, 5S ribosomal pseudogene 436 rRNA RNA5SP436 RNA, 5S ribosomal pseudogene 436 O - 20121021 -9606 100873686 RNA5SP437 - RN5S437 HGNC:43337 17 - RNA, 5S ribosomal pseudogene 437 rRNA RNA5SP437 RNA, 5S ribosomal pseudogene 437 O - 20121021 -9606 100873687 RNA5SP438 - RN5S438 HGNC:43338 17 - RNA, 5S ribosomal pseudogene 438 rRNA RNA5SP438 RNA, 5S ribosomal pseudogene 438 O - 20121021 -9606 100873688 RNA5SP440 - RN5S440 HGNC:43340 17 - RNA, 5S ribosomal pseudogene 440 rRNA RNA5SP440 RNA, 5S ribosomal pseudogene 440 O - 20121021 -9606 100873689 RNA5SP441 - RN5S441 HGNC:43341 17 - RNA, 5S ribosomal pseudogene 441 rRNA RNA5SP441 RNA, 5S ribosomal pseudogene 441 O - 20121021 -9606 100873690 RNA5SP444 - RN5S444 HGNC:43344 17 - RNA, 5S ribosomal pseudogene 444 rRNA RNA5SP444 RNA, 5S ribosomal pseudogene 444 O - 20121021 -9606 100873691 RNA5SP445 - RN5S445 HGNC:43345 17 - RNA, 5S ribosomal pseudogene 445 rRNA RNA5SP445 RNA, 5S ribosomal pseudogene 445 O - 20121021 -9606 100873692 RNA5SP446 - RN5S446 HGNC:43346 17 - RNA, 5S ribosomal pseudogene 446 rRNA RNA5SP446 RNA, 5S ribosomal pseudogene 446 O - 20121021 -9606 100873693 RNA5SP447 - RN5S447 HGNC:43347 17 - RNA, 5S ribosomal pseudogene 447 rRNA RNA5SP447 RNA, 5S ribosomal pseudogene 447 O - 20121021 -9606 100873694 RNA5SP449 - RN5S449 HGNC:43349 18 - RNA, 5S ribosomal pseudogene 449 rRNA RNA5SP449 RNA, 5S ribosomal pseudogene 449 O - 20121021 -9606 100873695 RNA5SP450 - RN5S450 HGNC:43350 18 - RNA, 5S ribosomal pseudogene 450 rRNA RNA5SP450 RNA, 5S ribosomal pseudogene 450 O - 20121021 -9606 100873696 RNA5SP451 - RN5S451 HGNC:43351 18 - RNA, 5S ribosomal pseudogene 451 rRNA RNA5SP451 RNA, 5S ribosomal pseudogene 451 O - 20121021 -9606 100873697 RNA5SP452 - RN5S452 HGNC:43352 18 - RNA, 5S ribosomal pseudogene 452 rRNA RNA5SP452 RNA, 5S ribosomal pseudogene 452 O - 20121021 -9606 100873698 RNA5SP453 - RN5S453 HGNC:43353 18 - RNA, 5S ribosomal pseudogene 453 rRNA RNA5SP453 RNA, 5S ribosomal pseudogene 453 O - 20121021 -9606 100873699 RNA5SP454 - RN5S454 HGNC:43354 18 - RNA, 5S ribosomal pseudogene 454 rRNA RNA5SP454 RNA, 5S ribosomal pseudogene 454 O - 20121021 -9606 100873700 RNA5SP455 - RN5S455 HGNC:43355 18 - RNA, 5S ribosomal pseudogene 455 rRNA RNA5SP455 RNA, 5S ribosomal pseudogene 455 O - 20121021 -9606 100873701 RNA5SP456 - RN5S456 HGNC:43356 18 - RNA, 5S ribosomal pseudogene 456 rRNA RNA5SP456 RNA, 5S ribosomal pseudogene 456 O - 20121021 -9606 100873702 RNA5SP457 - RN5S457 HGNC:43357 18 - RNA, 5S ribosomal pseudogene 457 rRNA RNA5SP457 RNA, 5S ribosomal pseudogene 457 O - 20121021 -9606 100873703 RNA5SP459 - RN5S459 HGNC:43359 18 - RNA, 5S ribosomal pseudogene 459 rRNA RNA5SP459 RNA, 5S ribosomal pseudogene 459 O - 20121021 -9606 100873704 RNA5SP460 - RN5S460 HGNC:43360 18 - RNA, 5S ribosomal pseudogene 460 rRNA RNA5SP460 RNA, 5S ribosomal pseudogene 460 O - 20121021 -9606 100873705 RNA5SP461 - RN5S461 HGNC:43361 18 - RNA, 5S ribosomal pseudogene 461 rRNA RNA5SP461 RNA, 5S ribosomal pseudogene 461 O - 20121021 -9606 100873706 RNA5SP462 - RN5S462 HGNC:43362 19 - RNA, 5S ribosomal pseudogene 462 rRNA RNA5SP462 RNA, 5S ribosomal pseudogene 462 O - 20121021 -9606 100873707 RNA5SP463 - RN5S463 HGNC:43363 19 - RNA, 5S ribosomal pseudogene 463 rRNA RNA5SP463 RNA, 5S ribosomal pseudogene 463 O - 20121021 -9606 100873708 RNA5SP464 - RN5S464 HGNC:43364 19 - RNA, 5S ribosomal pseudogene 464 rRNA RNA5SP464 RNA, 5S ribosomal pseudogene 464 O - 20121021 -9606 100873709 RNA5SP465 - RN5S465 HGNC:43365 19 - RNA, 5S ribosomal pseudogene 465 rRNA RNA5SP465 RNA, 5S ribosomal pseudogene 465 O - 20121021 -9606 100873710 RNA5SP466 - RN5S466 HGNC:43366 19 - RNA, 5S ribosomal pseudogene 466 rRNA RNA5SP466 RNA, 5S ribosomal pseudogene 466 O - 20121021 -9606 100873711 RNA5SP467 - RN5S467 HGNC:43367 19 - RNA, 5S ribosomal pseudogene 467 rRNA RNA5SP467 RNA, 5S ribosomal pseudogene 467 O - 20121021 -9606 100873712 RNA5SP469 - RN5S469 HGNC:43369 19 - RNA, 5S ribosomal pseudogene 469 rRNA RNA5SP469 RNA, 5S ribosomal pseudogene 469 O - 20121021 -9606 100873713 RNA5SP470 - RN5S470 HGNC:43370 19 - RNA, 5S ribosomal pseudogene 470 rRNA RNA5SP470 RNA, 5S ribosomal pseudogene 470 O - 20121021 -9606 100873714 RNA5SP471 - RN5S471 HGNC:43371 19 - RNA, 5S ribosomal pseudogene 471 rRNA RNA5SP471 RNA, 5S ribosomal pseudogene 471 O - 20121021 -9606 100873715 RNA5SP472 - RN5S472 HGNC:43372 19 - RNA, 5S ribosomal pseudogene 472 rRNA RNA5SP472 RNA, 5S ribosomal pseudogene 472 O - 20121021 -9606 100873716 RNA5SP474 - RN5S474 HGNC:43374 20 - RNA, 5S ribosomal pseudogene 474 rRNA RNA5SP474 RNA, 5S ribosomal pseudogene 474 O - 20121021 -9606 100873717 RNA5SP475 - RN5S475 HGNC:43375 20 - RNA, 5S ribosomal pseudogene 475 rRNA RNA5SP475 RNA, 5S ribosomal pseudogene 475 O - 20121021 -9606 100873718 RNA5SP476 - RN5S476 HGNC:43376 20 - RNA, 5S ribosomal pseudogene 476 rRNA RNA5SP476 RNA, 5S ribosomal pseudogene 476 O - 20121021 -9606 100873719 RNA5SP477 - RN5S477 HGNC:43377 20 - RNA, 5S ribosomal pseudogene 477 rRNA RNA5SP477 RNA, 5S ribosomal pseudogene 477 O - 20121021 -9606 100873720 RNA5SP478 - RN5S478 HGNC:43378 20 - RNA, 5S ribosomal pseudogene 478 rRNA RNA5SP478 RNA, 5S ribosomal pseudogene 478 O - 20121021 -9606 100873721 RNA5SP479 - RN5S479 HGNC:43379 20 - RNA, 5S ribosomal pseudogene 479 rRNA RNA5SP479 RNA, 5S ribosomal pseudogene 479 O - 20121021 -9606 100873722 RNA5SP480 - RN5S480 HGNC:43380 20 - RNA, 5S ribosomal pseudogene 480 rRNA RNA5SP480 RNA, 5S ribosomal pseudogene 480 O - 20121021 -9606 100873723 RNA5SP481 - RN5S481 HGNC:43381 20 - RNA, 5S ribosomal pseudogene 481 rRNA RNA5SP481 RNA, 5S ribosomal pseudogene 481 O - 20121021 -9606 100873724 RNA5SP482 - RN5S482 HGNC:43382 20 - RNA, 5S ribosomal pseudogene 482 rRNA RNA5SP482 RNA, 5S ribosomal pseudogene 482 O - 20121021 -9606 100873725 RNA5SP483 - RN5S483 HGNC:43383 20 - RNA, 5S ribosomal pseudogene 483 rRNA RNA5SP483 RNA, 5S ribosomal pseudogene 483 O - 20121021 -9606 100873726 RNA5SP484 - RN5S484 HGNC:43384 20 - RNA, 5S ribosomal pseudogene 484 rRNA RNA5SP484 RNA, 5S ribosomal pseudogene 484 O - 20121021 -9606 100873727 RNA5SP485 - RN5S485 HGNC:43385 20 - RNA, 5S ribosomal pseudogene 485 rRNA RNA5SP485 RNA, 5S ribosomal pseudogene 485 O - 20121021 -9606 100873728 RNA5SP486 - RN5S486 HGNC:43386 20 - RNA, 5S ribosomal pseudogene 486 rRNA RNA5SP486 RNA, 5S ribosomal pseudogene 486 O - 20121021 -9606 100873729 RNA5SP487 - RN5S487 HGNC:43387 20 - RNA, 5S ribosomal pseudogene 487 rRNA RNA5SP487 RNA, 5S ribosomal pseudogene 487 O - 20121021 -9606 100873730 RNA5SP488 - RN5S488 HGNC:43388 21 - RNA, 5S ribosomal pseudogene 488 rRNA RNA5SP488 RNA, 5S ribosomal pseudogene 488 O - 20121021 -9606 100873731 RNA5SP489 - RN5S489 HGNC:43389 21 - RNA, 5S ribosomal pseudogene 489 rRNA RNA5SP489 RNA, 5S ribosomal pseudogene 489 O - 20121021 -9606 100873732 RNA5SP490 - RN5S490 HGNC:43390 21 - RNA, 5S ribosomal pseudogene 490 rRNA RNA5SP490 RNA, 5S ribosomal pseudogene 490 O - 20121021 -9606 100873733 RNA5SP491 - RN5S491 HGNC:43391 21 - RNA, 5S ribosomal pseudogene 491 rRNA RNA5SP491 RNA, 5S ribosomal pseudogene 491 O - 20121021 -9606 100873734 RNA5SP492 - RN5S492 HGNC:43392 21 - RNA, 5S ribosomal pseudogene 492 rRNA RNA5SP492 RNA, 5S ribosomal pseudogene 492 O - 20121021 -9606 100873735 RNA5SP493 - RN5S493 HGNC:43393 22 - RNA, 5S ribosomal pseudogene 493 rRNA RNA5SP493 RNA, 5S ribosomal pseudogene 493 O - 20121021 -9606 100873736 RNA5SP494 - RN5S494 HGNC:43394 22 - RNA, 5S ribosomal pseudogene 494 rRNA RNA5SP494 RNA, 5S ribosomal pseudogene 494 O - 20121021 -9606 100873737 RNA5SP495 - RN5S495 HGNC:43395 22 - RNA, 5S ribosomal pseudogene 495 rRNA RNA5SP495 RNA, 5S ribosomal pseudogene 495 O - 20121021 -9606 100873738 RNA5SP496 - RN5S496 HGNC:43396 22 - RNA, 5S ribosomal pseudogene 496 rRNA RNA5SP496 RNA, 5S ribosomal pseudogene 496 O - 20121021 -9606 100873739 RNA5SP497 - RN5S497 HGNC:43397 22 - RNA, 5S ribosomal pseudogene 497 rRNA RNA5SP497 RNA, 5S ribosomal pseudogene 497 O - 20121021 -9606 100873740 RNU6-6 - - HGNC:34250 2 - RNA, U6 small nuclear 6 snRNA RNU6-6 RNA, U6 small nuclear 6 O - 20121230 -9606 100873741 RNU6-8 - - HGNC:34252 3 - RNA, U6 small nuclear 8 snRNA RNU6-8 RNA, U6 small nuclear 8 O - 20121230 -9606 100873742 GOLGA2P4 - - HGNC:38600 22 - golgin A2 pseudogene 4 pseudo GOLGA2P4 golgin A2 pseudogene 4 O - 20121230 -9606 100873743 NCSTNP1 - - HGNC:39606 21 - nicastrin pseudogene 1 pseudo NCSTNP1 nicastrin pseudogene 1 O - 20121230 -9606 100873744 PFN1P8 - - HGNC:42986 1 - profilin 1 pseudogene 8 pseudo PFN1P8 profilin 1 pseudogene 8 O - 20121230 -9606 100873745 RNU6-10 - - HGNC:34254 7 - RNA, U6 small nuclear 10 snRNA RNU6-10 RNA, U6 small nuclear 10 O - 20121230 -9606 100873746 RNU6-14 - - HGNC:34258 9 - RNA, U6 small nuclear 14 snRNA RNU6-14 RNA, U6 small nuclear 14 O - 20121230 -9606 100873747 RNU6-30 - - HGNC:34274 X - RNA, U6 small nuclear 30 snRNA RNU6-30 RNA, U6 small nuclear 30 O - 20121230 -9606 100873748 RNU6-33 - - HGNC:34277 4 - RNA, U6 small nuclear 33 snRNA RNU6-33 RNA, U6 small nuclear 33 O - 20121230 -9606 100873749 RNU6-34 - - HGNC:34278 4 - RNA, U6 small nuclear 34 snRNA RNU6-34 RNA, U6 small nuclear 34 O - 20121230 -9606 100873750 RNU6-35 - - HGNC:34279 4 - RNA, U6 small nuclear 35 snRNA RNU6-35 RNA, U6 small nuclear 35 O - 20121230 -9606 100873751 PHBP14 - - HGNC:39293 4 - prohibitin pseudogene 14 pseudo PHBP14 prohibitin pseudogene 14 O - 20121230 -9606 100873752 PHBP15 - - HGNC:39294 7 - prohibitin pseudogene 15 pseudo PHBP15 prohibitin pseudogene 15 O - 20121230 -9606 100873753 RNU6-16 - - HGNC:34260 11 - RNA, U6 small nuclear 16 snRNA RNU6-16 RNA, U6 small nuclear 16 O - 20121230 -9606 100873754 RNU6-19 - - HGNC:34263 15 - RNA, U6 small nuclear 19 snRNA RNU6-19 RNA, U6 small nuclear 19 O - 20121230 -9606 100873755 RNU6-23 - - HGNC:34267 16 - RNA, U6 small nuclear 23 snRNA RNU6-23 RNA, U6 small nuclear 23 O - 20121230 -9606 100873756 RNU6-28 - - HGNC:34272 22 - RNA, U6 small nuclear 28 snRNA RNU6-28 RNA, U6 small nuclear 28 O - 20121230 -9606 100873757 RNU6-36 - - HGNC:34280 12 - RNA, U6 small nuclear 36 snRNA RNU6-36 RNA, U6 small nuclear 36 O - 20121230 -9606 100873758 RNU6-39 - - HGNC:34283 18 - RNA, U6 small nuclear 39 snRNA RNU6-39 RNA, U6 small nuclear 39 O - 20121230 -9606 100873759 RNU6-45 - - HGNC:34289 11 - RNA, U6 small nuclear 45 snRNA RNU6-45 RNA, U6 small nuclear 45 O - 20121230 -9606 100873760 RNU6-46 - - HGNC:34290 11 - RNA, U6 small nuclear 46 snRNA RNU6-46 RNA, U6 small nuclear 46 O - 20121230 -9606 100873761 RNU6-52 - - HGNC:42542 13 - RNA, U6 small nuclear 52 snRNA RNU6-52 RNA, U6 small nuclear 52 O - 20121230 -9606 100873762 RNU6-53 - - HGNC:42543 13 - RNA, U6 small nuclear 53 snRNA RNU6-53 RNA, U6 small nuclear 53 O - 20121230 -9606 100873763 RNU6-55 - - HGNC:42545 13 - RNA, U6 small nuclear 55 snRNA RNU6-55 RNA, U6 small nuclear 55 O - 20121230 -9606 100873764 RNU6-56 - - HGNC:42546 13 - RNA, U6 small nuclear 56 snRNA RNU6-56 RNA, U6 small nuclear 56 O - 20121230 -9606 100873765 RNU6-57 - - HGNC:42547 13 - RNA, U6 small nuclear 57 snRNA RNU6-57 RNA, U6 small nuclear 57 O - 20121230 -9606 100873766 RNU6-58 - - HGNC:42548 13 - RNA, U6 small nuclear 58 snRNA RNU6-58 RNA, U6 small nuclear 58 O - 20121230 -9606 100873767 RNU6-59 - - HGNC:42549 13 - RNA, U6 small nuclear 59 snRNA RNU6-59 RNA, U6 small nuclear 59 O - 20121230 -9606 100873768 RNU6-63 - - HGNC:42553 13 - RNA, U6 small nuclear 63 snRNA RNU6-63 RNA, U6 small nuclear 63 O - 20121230 -9606 100873769 RNU6-64 - - HGNC:42554 13 - RNA, U6 small nuclear 64 snRNA RNU6-64 RNA, U6 small nuclear 64 O - 20121230 -9606 100873770 RNU6-66 - - HGNC:42556 13 - RNA, U6 small nuclear 66 snRNA RNU6-66 RNA, U6 small nuclear 66 O - 20121230 -9606 100873771 RNU6-67 - - HGNC:42557 13 - RNA, U6 small nuclear 67 snRNA RNU6-67 RNA, U6 small nuclear 67 O - 20121230 -9606 100873772 RNU6-68 - - HGNC:42558 13 - RNA, U6 small nuclear 68 snRNA RNU6-68 RNA, U6 small nuclear 68 O - 20121230 -9606 100873773 RNU6-69 - - HGNC:42559 13 - RNA, U6 small nuclear 69 snRNA RNU6-69 RNA, U6 small nuclear 69 O - 20121230 -9606 100873774 RNU6-71 - - HGNC:42561 13 - RNA, U6 small nuclear 71 snRNA RNU6-71 RNA, U6 small nuclear 71 O - 20121230 -9606 100873775 RNU6-72 - - HGNC:42562 13 - RNA, U6 small nuclear 72 snRNA RNU6-72 RNA, U6 small nuclear 72 O - 20121230 -9606 100873776 RNU6-75 - - HGNC:42565 13 - RNA, U6 small nuclear 75 snRNA RNU6-75 RNA, U6 small nuclear 75 O - 20121230 -9606 100873777 RNU6-76 - - HGNC:42566 13 - RNA, U6 small nuclear 76 snRNA RNU6-76 RNA, U6 small nuclear 76 O - 20121230 -9606 100873778 RNU6-78 - - HGNC:42568 13 - RNA, U6 small nuclear 78 snRNA RNU6-78 RNA, U6 small nuclear 78 O - 20121230 -9606 100873779 RNU6-79 - - HGNC:42569 13 - RNA, U6 small nuclear 79 snRNA RNU6-79 RNA, U6 small nuclear 79 O - 20121230 -9606 100873780 RNU6-81 - - HGNC:42571 13 - RNA, U6 small nuclear 81 snRNA RNU6-81 RNA, U6 small nuclear 81 O - 20121230 -9606 100873781 RNU6-82 - - HGNC:42572 13 - RNA, U6 small nuclear 82 snRNA RNU6-82 RNA, U6 small nuclear 82 O - 20121230 -9606 100873782 RNU6-83 - - HGNC:42573 13 - RNA, U6 small nuclear 83 snRNA RNU6-83 RNA, U6 small nuclear 83 O - 20121230 -9606 100873783 UBBP5 - - HGNC:42645 13 - ubiquitin B pseudogene 5 pseudo UBBP5 ubiquitin B pseudogene 5 O - 20121230 -9606 100873784 PFN1P11 - - HGNC:42994 10 - profilin 1 pseudogene 11 pseudo PFN1P11 profilin 1 pseudogene 11 O - 20121230 -9606 100873785 SNX2P2 - - HGNC:41515 7 - sorting nexin 2 pseudogene 2 pseudo SNX2P2 sorting nexin 2 pseudogene 2 O - 20121230 -9606 100873786 TMSB10P2 - - HGNC:41950 X - thymosin beta 10 pseudogene 2 pseudo TMSB10P2 thymosin beta 10 pseudogene 2 O - 20121230 -9606 100873787 GPM6BP3 - - HGNC:38783 22 - glycoprotein M6B pseudogene 3 pseudo GPM6BP3 glycoprotein M6B pseudogene 3 O - 20121230 -9606 100873788 SNX18P27 - - HGNC:39635 8 - sorting nexin 18 pseudogene 27 pseudo SNX18P27 sorting nexin 18 pseudogene 27 O - 20121230 -9606 100873789 AK3P6 - - HGNC:39065 12 - adenylate kinase 3 pseudogene 6 pseudo AK3P6 adenylate kinase 3 pseudogene 6 O - 20121230 -9606 100873790 FHP1 - - HGNC:39442 13 - fumarate hydratase pseudogene 1 pseudo FHP1 fumarate hydratase pseudogene 1 O - 20121230 -9606 100873791 CHEK2P3 - - HGNC:43579 2 - checkpoint kinase 2 pseudogene 3 pseudo CHEK2P3 checkpoint kinase 2 pseudogene 3 O - 20121230 -9606 100873792 CBX3P4 - - HGNC:42876 12 - chromobox homolog 3 pseudogene 4 pseudo CBX3P4 chromobox homolog 3 pseudogene 4 O - 20121230 -9606 100873793 PHF2P2 - - HGNC:38808 13 - PHD finger protein 2 pseudogene 2 pseudo PHF2P2 PHD finger protein 2 pseudogene 2 O - 20121230 -9606 100873794 ASNSP5 - - HGNC:39401 1 - asparagine synthetase pseudogene 5 pseudo ASNSP5 asparagine synthetase pseudogene 5 O - 20121230 -9606 100873795 WDR95P - - HGNC:42637 13 - WD40 repeat domain 95, pseudogene pseudo WDR95P WD40 repeat domain 95, pseudogene O - 20121230 -9606 100873796 RPL35P9 - - HGNC:39402 13 - ribosomal protein L35 pseudogene 9 pseudo RPL35P9 ribosomal protein L35 pseudogene 9 O - 20121230 -9606 100873797 RPSAP64 - - HGNC:39642 21 - ribosomal protein SA pseudogene 64 pseudo RPSAP64 ribosomal protein SA pseudogene 64 O - 20121230 -9606 100873798 RPS21P8 - - HGNC:39705 13 - ribosomal protein S21 pseudogene 8 pseudo RPS21P8 ribosomal protein S21 pseudogene 8 O - 20121230 -9606 100873799 ZNF90P3 - - HGNC:39882 7 - zinc finger protein 90 pseudogene 3 pseudo ZNF90P3 zinc finger protein 90 pseudogene 3 O - 20121230 -9606 100873800 RNY4P22 - - HGNC:42472 3 - RNA, Ro-associated Y4 pseudogene 22 pseudo RNY4P22 RNA, Ro-associated Y4 pseudogene 22 O - 20121230 -9606 100873801 RNY4P23 - - HGNC:42473 X - RNA, Ro-associated Y4 pseudogene 23 pseudo RNY4P23 RNA, Ro-associated Y4 pseudogene 23 O - 20121021 -9606 100873802 RNY1P1 - - HGNC:42478 13 - RNA, Ro-associated Y1 pseudogene 1 pseudo RNY1P1 RNA, Ro-associated Y1 pseudogene 1 O - 20121021 -9606 100873803 RNY1P3 - - HGNC:42480 13 - RNA, Ro-associated Y1 pseudogene 3 pseudo RNY1P3 RNA, Ro-associated Y1 pseudogene 3 O - 20121230 -9606 100873804 RNY1P4 - - HGNC:42481 13 - RNA, Ro-associated Y1 pseudogene 4 pseudo RNY1P4 RNA, Ro-associated Y1 pseudogene 4 O - 20121021 -9606 100873805 RNY1P6 - - HGNC:42483 13 - RNA, Ro-associated Y1 pseudogene 6 pseudo RNY1P6 RNA, Ro-associated Y1 pseudogene 6 O - 20121230 -9606 100873806 RNY1P7 - - HGNC:42484 13 - RNA, Ro-associated Y1 pseudogene 7 pseudo RNY1P7 RNA, Ro-associated Y1 pseudogene 7 O - 20121021 -9606 100873807 RNY1P8 - - HGNC:42485 13 - RNA, Ro-associated Y1 pseudogene 8 pseudo RNY1P8 RNA, Ro-associated Y1 pseudogene 8 O - 20121230 -9606 100873808 RNY3P4 - - HGNC:42488 13 - RNA, Ro-associated Y3 pseudogene 4 pseudo RNY3P4 RNA, Ro-associated Y3 pseudogene 4 O - 20121021 -9606 100873809 RNY3P5 - - HGNC:42489 13 - RNA, Ro-associated Y3 pseudogene 5 pseudo RNY3P5 RNA, Ro-associated Y3 pseudogene 5 O - 20121021 -9606 100873810 RNY3P6 - - HGNC:42490 13 - RNA, Ro-associated Y3 pseudogene 6 pseudo RNY3P6 RNA, Ro-associated Y3 pseudogene 6 O - 20121230 -9606 100873811 ZNF877P - - HGNC:38697 20 - zinc finger protein 877, pseudogene pseudo ZNF877P zinc finger protein 877, pseudogene O - 20121230 -9606 100873812 CFL1P8 - - HGNC:39960 13 - cofilin 1 (non-muscle) pseudogene 8 pseudo CFL1P8 cofilin 1 (non-muscle) pseudogene 8 O - 20121230 -9606 100873813 HLFP1 - - HGNC:41922 6 - hepatic leukemia factor pseudogene 1 pseudo HLFP1 hepatic leukemia factor pseudogene 1 O - 20121230 -9606 100873814 RNU1-17P - - HGNC:41943 5 - RNA, U1 small nuclear 17, pseudogene pseudo RNU1-17P RNA, U1 small nuclear 17, pseudogene O - 20121230 -9606 100873815 RNU1-18P - - HGNC:41944 6 - RNA, U1 small nuclear 18, pseudogene pseudo RNU1-18P RNA, U1 small nuclear 18, pseudogene O - 20121230 -9606 100873816 RNU1-20P - - HGNC:41946 3 - RNA, U1 small nuclear 20, pseudogene pseudo RNU1-20P RNA, U1 small nuclear 20, pseudogene O - 20121230 -9606 100873817 RPL7AP73 - - HGNC:41968 13 - ribosomal protein L7a pseudogene 73 pseudo RPL7AP73 ribosomal protein L7a pseudogene 73 O - 20121230 -9606 100873818 RPS3AP52 - - HGNC:42004 13 - ribosomal protein S3a pseudogene 52 pseudo RPS3AP52 ribosomal protein S3a pseudogene 52 O - 20121230 -9606 100873819 RNY4P26 - - HGNC:42476 10 - RNA, Ro-associated Y4 pseudogene 26 pseudo RNY4P26 RNA, Ro-associated Y4 pseudogene 26 O - 20121230 -9606 100873820 RNY3P10 - - HGNC:42494 13 - RNA, Ro-associated Y3 pseudogene 10 pseudo RNY3P10 RNA, Ro-associated Y3 pseudogene 10 O - 20121230 -9606 100873821 RNY4P27 - - HGNC:42495 13 - RNA, Ro-associated Y4 pseudogene 27 pseudo RNY4P27 RNA, Ro-associated Y4 pseudogene 27 O - 20121021 -9606 100873822 RNY4P28 - - HGNC:42496 13 - RNA, Ro-associated Y4 pseudogene 28 pseudo RNY4P28 RNA, Ro-associated Y4 pseudogene 28 O - 20121230 -9606 100873823 RNY4P29 - - HGNC:42497 13 - RNA, Ro-associated Y4 pseudogene 29 pseudo RNY4P29 RNA, Ro-associated Y4 pseudogene 29 O - 20121021 -9606 100873824 RNU2-7P - - HGNC:42505 13 - RNA, U2 small nuclear 7, pseudogene pseudo RNU2-7P RNA, U2 small nuclear 7, pseudogene O - 20121021 -9606 100873825 RNU2-6P - - HGNC:42506 13 - RNA, U2 small nuclear 6, pseudogene pseudo RNU2-6P RNA, U2 small nuclear 6, pseudogene O - 20121021 -9606 100873826 RNU5F-2P - - HGNC:42510 1 - RNA, U5F small nuclear 2, pseudogene pseudo RNU5F-2P RNA, U5F small nuclear 2, pseudogene O - 20121230 -9606 100873827 RNU5E-2P - - HGNC:42511 1 - RNA, U5E small nuclear 2, pseudogene pseudo RNU5E-2P RNA, U5E small nuclear 2, pseudogene O - 20121230 -9606 100873828 RNU5E-3P - - HGNC:42512 4 - RNA, U5E small nuclear 3, pseudogene pseudo RNU5E-3P RNA, U5E small nuclear 3, pseudogene O - 20121230 -9606 100873829 RNU5E-4P - - HGNC:42513 1 - RNA, U5E small nuclear 4, pseudogene pseudo RNU5E-4P RNA, U5E small nuclear 4, pseudogene O - 20121230 -9606 100873830 RNU5A-2P - - HGNC:42515 4 - RNA, U5A small nuclear 2, pseudogene pseudo RNU5A-2P RNA, U5A small nuclear 2, pseudogene O - 20121021 -9606 100873831 RNU5A-3P - - HGNC:42519 8 - RNA, U5A small nuclear 3, pseudogene pseudo RNU5A-3P RNA, U5A small nuclear 3, pseudogene O - 20121230 -9606 100873832 RNU5E-6P - - HGNC:42522 1 - RNA, U5E small nuclear 6, pseudogene pseudo RNU5E-6P RNA, U5E small nuclear 6, pseudogene O - 20121230 -9606 100873833 RNU5F-6P - - HGNC:42523 1 - RNA, U5F small nuclear 6, pseudogene pseudo RNU5F-6P RNA, U5F small nuclear 6, pseudogene O - 20121021 -9606 100873834 RNU5F-7P - - HGNC:42524 X - RNA, U5F small nuclear 7, pseudogene pseudo RNU5F-7P RNA, U5F small nuclear 7, pseudogene O - 20121230 -9606 100873835 RNU5A-5P - - HGNC:42525 1 - RNA, U5A small nuclear 5, pseudogene pseudo RNU5A-5P RNA, U5A small nuclear 5, pseudogene O - 20121230 -9606 100873836 RNU5E-7P - - HGNC:42526 2 - RNA, U5E small nuclear 7, pseudogene pseudo RNU5E-7P RNA, U5E small nuclear 7, pseudogene O - 20121230 -9606 100873837 RNU5E-8P - - HGNC:42528 3 - RNA, U5E small nuclear 8, pseudogene pseudo RNU5E-8P RNA, U5E small nuclear 8, pseudogene O - 20121021 -9606 100873838 RNU5A-8P - - HGNC:42530 1 - RNA, U5A small nuclear 8, pseudogene pseudo RNU5A-8P RNA, U5A small nuclear 8, pseudogene O - 20121230 -9606 100873839 RNU5F-8P - - HGNC:42531 1 - RNA, U5F small nuclear 8, pseudogene pseudo RNU5F-8P RNA, U5F small nuclear 8, pseudogene O - 20121021 -9606 100873840 RNU5E-9P - - HGNC:42532 2 - RNA, U5E small nuclear 9, pseudogene pseudo RNU5E-9P RNA, U5E small nuclear 9, pseudogene O - 20121230 -9606 100873841 RNU5D-2P - - HGNC:42534 9 - RNA, U5D small nuclear 2, pseudogene pseudo RNU5D-2P RNA, U5D small nuclear 2, pseudogene O - 20121230 -9606 100873842 RNU7-87P - - HGNC:42616 13 - RNA, U7 small nuclear 87 pseudogene pseudo RNU7-87P RNA, U7 small nuclear 87 pseudogene O - 20121230 -9606 100873843 RNU7-88P - - HGNC:42617 13 - RNA, U7 small nuclear 88 pseudogene pseudo RNU7-88P RNA, U7 small nuclear 88 pseudogene O - 20121230 -9606 100873844 RNU7-89P - - HGNC:42618 13 - RNA, U7 small nuclear 89 pseudogene pseudo RNU7-89P RNA, U7 small nuclear 89 pseudogene O - 20121230 -9606 100873845 RN7SKP1 - - HGNC:42619 13 - RNA, 7SK small nuclear pseudogene 1 pseudo RN7SKP1 RNA, 7SK small nuclear pseudogene 1 O - 20121021 -9606 100873846 RN7SKP2 - - HGNC:42620 13 - RNA, 7SK small nuclear pseudogene 2 pseudo RN7SKP2 RNA, 7SK small nuclear pseudogene 2 O - 20121230 -9606 100873847 RN7SKP3 - - HGNC:42621 13 - RNA, 7SK small nuclear pseudogene 3 pseudo RN7SKP3 RNA, 7SK small nuclear pseudogene 3 O - 20121230 -9606 100873848 RN7SKP4 - - HGNC:42622 13 - RNA, 7SK small nuclear pseudogene 4 pseudo RN7SKP4 RNA, 7SK small nuclear pseudogene 4 O - 20121021 -9606 100873849 RN7SKP5 - - HGNC:42623 13 - RNA, 7SK small nuclear pseudogene 5 pseudo RN7SKP5 RNA, 7SK small nuclear pseudogene 5 O - 20121230 -9606 100873850 RN7SKP6 - - HGNC:42624 13 - RNA, 7SK small nuclear pseudogene 6 pseudo RN7SKP6 RNA, 7SK small nuclear pseudogene 6 O - 20121230 -9606 100873851 RN7SKP7 - - HGNC:42625 13 - RNA, 7SK small nuclear pseudogene 7 pseudo RN7SKP7 RNA, 7SK small nuclear pseudogene 7 O - 20121021 -9606 100873852 RN7SKP8 - - HGNC:42626 13 - RNA, 7SK small nuclear pseudogene 8 pseudo RN7SKP8 RNA, 7SK small nuclear pseudogene 8 O - 20121021 -9606 100873853 RN7SKP9 - - HGNC:42627 13 - RNA, 7SK small nuclear pseudogene 9 pseudo RN7SKP9 RNA, 7SK small nuclear pseudogene 9 O - 20121230 -9606 100873854 MOB1AP2 - MOBKL1BP2 HGNC:42639 X - MOB kinase activator 1A pseudogene 2 pseudo MOB1AP2 MOB kinase activator 1A pseudogene 2 O - 20121230 -9606 100873855 RPL36P19 - - HGNC:42648 13 - ribosomal protein L36 pseudogene 19 pseudo RPL36P19 ribosomal protein L36 pseudogene 19 O - 20121230 -9606 100873856 SNORD116-30 - HBII-85-30 HGNC:42797 15 - small nucleolar RNA, C/D box 116-30 snoRNA SNORD116-30 small nucleolar RNA, C/D box 116-30 O - 20121021 -9606 100873857 SNORD115-46 - HBII-52-46 HGNC:42798 15 - small nucleolar RNA, C/D box 115-46 snoRNA SNORD115-46 small nucleolar RNA, C/D box 115-46 O - 20121021 -9606 100873858 SDAD1P3 - - HGNC:39260 3 - SDA1 domain containing 1 pseudogene 3 pseudo SDAD1P3 SDA1 domain containing 1 pseudogene 3 O - 20121230 -9606 100873859 RPL18AP17 - - HGNC:39850 13 - ribosomal protein L18a pseudogene 17 pseudo RPL18AP17 ribosomal protein L18a pseudogene 17 O - 20121230 -9606 100873860 RNU1-16P - U1.64 HGNC:39890 13 - RNA, U1 small nuclear 16, pseudogene pseudo RNU1-16P RNA, U1 small nuclear 16, pseudogene O - 20121021 -9606 100873861 RNU1-19P - - HGNC:41945 10 - RNA, U1 small nuclear 19, pseudogene pseudo RNU1-19P RNA, U1 small nuclear 19, pseudogene O - 20121230 -9606 100873862 RNU1-21P - - HGNC:41947 11 - RNA, U1 small nuclear 21, pseudogene pseudo RNU1-21P RNA, U1 small nuclear 21, pseudogene O - 20121021 -9606 100873863 RNU1-22P - - HGNC:41963 16 - RNA, U1 small nuclear 22, pseudogene pseudo RNU1-22P RNA, U1 small nuclear 22, pseudogene O - 20121230 -9606 100873864 LAP3P1 - - HGNC:42364 6 - leucine aminopeptidase 3 pseudogene 1 pseudo LAP3P1 leucine aminopeptidase 3 pseudogene 1 O - 20121230 -9606 100873865 RNU1-24P - U1.41 HGNC:42504 13 - RNA, U1 small nuclear 24, pseudogene pseudo RNU1-24P RNA, U1 small nuclear 24, pseudogene O - 20121230 -9606 100873866 RNU5F-3P - - HGNC:42514 18 - RNA, U5F small nuclear 3, pseudogene pseudo RNU5F-3P RNA, U5F small nuclear 3, pseudogene O - 20121230 -9606 100873867 RNU5F-4P - - HGNC:42516 12 - RNA, U5F small nuclear 4, pseudogene pseudo RNU5F-4P RNA, U5F small nuclear 4, pseudogene O - 20121230 -9606 100873868 RNU5F-5P - - HGNC:42518 22 - RNA, U5F small nuclear 5, pseudogene pseudo RNU5F-5P RNA, U5F small nuclear 5, pseudogene O - 20121230 -9606 100873869 RNU5E-5P - - HGNC:42520 12 - RNA, U5E small nuclear 5, pseudogene pseudo RNU5E-5P RNA, U5E small nuclear 5, pseudogene O - 20121021 -9606 100873870 RNU5A-4P - - HGNC:42521 13 - RNA, U5A small nuclear 4, pseudogene pseudo RNU5A-4P RNA, U5A small nuclear 4, pseudogene O - 20121230 -9606 100873871 RNU5A-6P - - HGNC:42527 18 - RNA, U5A small nuclear 6, pseudogene pseudo RNU5A-6P RNA, U5A small nuclear 6, pseudogene O - 20121230 -9606 100873872 RNU5A-7P - - HGNC:42529 12 - RNA, U5A small nuclear 7, pseudogene pseudo RNU5A-7P RNA, U5A small nuclear 7, pseudogene O - 20121021 -9606 100873873 RN7SKP10 - - HGNC:42628 13 - RNA, 7SK small nuclear pseudogene 10 pseudo RN7SKP10 RNA, 7SK small nuclear pseudogene 10 O - 20121230 -9606 100873874 MOB1AP1 - MOBKL1BP1 HGNC:42638 13 - MOB kinase activator 1A pseudogene 1 pseudo MOB1AP1 MOB kinase activator 1A pseudogene 1 O - 20121230 -9606 100873875 PSPC1P2 - - HGNC:42643 13 - paraspeckle component 1 pseudogene 2 pseudo PSPC1P2 paraspeckle component 1 pseudogene 2 O - 20121230 -9606 100873876 TRNAV38 - - HGNC:38576 1 - transfer RNA valine 38 (anticodon CAC) tRNA TRNAV38 transfer RNA valine 38 (anticodon CAC) O - 20120328 -9606 100873877 TMSB4XP3 - - HGNC:38587 7 - thymosin beta 4, X-linked pseudogene 3 pseudo TMSB4XP3 thymosin beta 4, X-linked pseudogene 3 O - 20121230 -9606 100873878 MORF4L1P6 - - HGNC:39258 X - mortality factor 4 like 1 pseudogene 6 pseudo MORF4L1P6 mortality factor 4 like 1 pseudogene 6 O - 20121230 -9606 100873879 HMGB3P9 - - HGNC:39301 1 - high mobility group box 3 pseudogene 9 pseudo HMGB3P9 high mobility group box 3 pseudogene 9 O - 20121230 -9606 100873880 TMEM97P1 - - HGNC:39640 21 - transmembrane protein 97 pseudogene 1 pseudo TMEM97P1 transmembrane protein 97 pseudogene 1 O - 20121230 -9606 100873881 GRAMD4P2 - - HGNC:39654 22 - GRAM domain containing 4 pseudogene 2 pseudo GRAMD4P2 GRAM domain containing 4 pseudogene 2 O - 20121230 -9606 100873882 ANKRD26P4 - - HGNC:39690 13 - ankyrin repeat domain 26 pseudogene 4 pseudo ANKRD26P4 ankyrin repeat domain 26 pseudogene 4 O - 20121230 -9606 100873883 FGFR1OP2P1 - - HGNC:39706 13 - FGFR1 oncogene partner 2 pseudogene 1 pseudo FGFR1OP2P1 FGFR1 oncogene partner 2 pseudogene 1 O - 20121230 -9606 100873884 SNX3P1X - - HGNC:41516 X - sorting nexin 3 pseudogene 1, X-linked pseudo SNX3P1X sorting nexin 3 pseudogene 1, X-linked O - 20121230 -9606 100873885 SNX3P1Y - - HGNC:41517 Y - sorting nexin 3 pseudogene 1, Y-linked pseudo SNX3P1Y sorting nexin 3 pseudogene 1, Y-linked O - 20121230 -9606 100873886 SCAND3P1 - - HGNC:42037 13 - SCAN domain containing 3 pseudogene 1 pseudo SCAND3P1 SCAN domain containing 3 pseudogene 1 O - 20121021 -9606 100873887 PGAM1P3 - - HGNC:42450 3 - phosphoglycerate mutase 1 pseudogene 3 pseudo PGAM1P3 phosphoglycerate mutase 1 pseudogene 3 O - 20121230 -9606 100873888 RNU5E-10P - - HGNC:42533 11 - RNA, U5E small nuclear 10, pseudogene pseudo RNU5E-10P RNA, U5E small nuclear 10, pseudogene O - 20121230 -9606 100873889 RNU4ATAC2P - - HGNC:39003 5 - RNA, U4atac small nuclear 2, pseudogene pseudo RNU4ATAC2P RNA, U4atac small nuclear 2, pseudogene O - 20121230 -9606 100873890 HMGB3P4 - - HGNC:39104 13 - high mobility group box 3 pseudogene 4 pseudo HMGB3P4 high mobility group box 3 pseudogene 4 O - 20121230 -9606 100873891 HMGB1P23 - - HGNC:39114 8 - high mobility group box 1 pseudogene 23 pseudo HMGB1P23 high mobility group box 1 pseudogene 23 O - 20121230 -9606 100873892 HMGB1P29 - - HGNC:39120 5 - high mobility group box 1 pseudogene 29 pseudo HMGB1P29 high mobility group box 1 pseudogene 29 O - 20121230 -9606 100873893 HMGB1P30 - - HGNC:39121 3 - high mobility group box 1 pseudogene 30 pseudo HMGB1P30 high mobility group box 1 pseudogene 30 O - 20121230 -9606 100873894 HMGB1P31 - - HGNC:39122 2 - high mobility group box 1 pseudogene 31 pseudo HMGB1P31 high mobility group box 1 pseudogene 31 O - 20121230 -9606 100873895 HMGB1P38 - - HGNC:39185 3 - high mobility group box 1 pseudogene 38 pseudo HMGB1P38 high mobility group box 1 pseudogene 38 O - 20121230 -9606 100873896 HMGB1P41 - - HGNC:39188 8 - high mobility group box 1 pseudogene 41 pseudo HMGB1P41 high mobility group box 1 pseudogene 41 O - 20121230 -9606 100873897 HMGB1P47 - - HGNC:39280 5 - high mobility group box 1 pseudogene 47 pseudo HMGB1P47 high mobility group box 1 pseudogene 47 O - 20121230 -9606 100873898 HMGB3P12 - - HGNC:39304 3 - high mobility group box 3 pseudogene 12 pseudo HMGB3P12 high mobility group box 3 pseudogene 12 O - 20121230 -9606 100873899 HMGB3P14 - - HGNC:39306 3 - high mobility group box 3 pseudogene 14 pseudo HMGB3P14 high mobility group box 3 pseudogene 14 O - 20121230 -9606 100873900 HMGB3P16 - - HGNC:39308 5 - high mobility group box 3 pseudogene 16 pseudo HMGB3P16 high mobility group box 3 pseudogene 16 O - 20121230 -9606 100873901 HMGB3P21 - - HGNC:39313 7 - high mobility group box 3 pseudogene 21 pseudo HMGB3P21 high mobility group box 3 pseudogene 21 O - 20121230 -9606 100873902 GK-AS1 - - HGNC:40255 X - GK antisense RNA 1 miscRNA GK-AS1 GK antisense RNA 1 O - 20121021 -9606 100873903 HSPA9P2 - - HGNC:31733 18 - heat shock 70kDa protein 9 pseudogene 2 pseudo HSPA9P2 heat shock 70kDa protein 9 pseudogene 2 O - 20121230 -9606 100873904 MYB-AS1 - MYB-AS|MYBAS|NCRNA00209|RP1-32B1.3 HGNC:37457 6 - MYB antisense RNA 1 miscRNA MYB-AS1 MYB antisense RNA 1 O - 20121021 -9606 100873905 HMGB1P33 - - HGNC:39124 15 - high mobility group box 1 pseudogene 33 pseudo HMGB1P33 high mobility group box 1 pseudogene 33 O - 20121230 -9606 100873906 HMGB1P42 - - HGNC:39189 11 - high mobility group box 1 pseudogene 42 pseudo HMGB1P42 high mobility group box 1 pseudogene 42 O - 20121230 -9606 100873907 ORAOV1P1 - - HGNC:39203 4 - oral cancer overexpressed 1 pseudogene 1 pseudo ORAOV1P1 oral cancer overexpressed 1 pseudogene 1 O - 20121230 -9606 100873908 HMGB3P25 - - HGNC:39317 11 - high mobility group box 3 pseudogene 25 pseudo HMGB3P25 high mobility group box 3 pseudogene 25 O - 20121230 -9606 100873909 DUTP2 - - HGNC:39515 8 - deoxyuridine triphosphatase pseudogene 2 pseudo DUTP2 deoxyuridine triphosphatase pseudogene 2 O - 20121230 -9606 100873910 DUTP4 - - HGNC:39517 X - deoxyuridine triphosphatase pseudogene 4 pseudo DUTP4 deoxyuridine triphosphatase pseudogene 4 O - 20121230 -9606 100873911 DUTP5 - - HGNC:39518 6 - deoxyuridine triphosphatase pseudogene 5 pseudo DUTP5 deoxyuridine triphosphatase pseudogene 5 O - 20121230 -9606 100873912 DUTP6 - - HGNC:39519 1 - deoxyuridine triphosphatase pseudogene 6 pseudo DUTP6 deoxyuridine triphosphatase pseudogene 6 O - 20121230 -9606 100873913 DUTP7 - - HGNC:39520 4 - deoxyuridine triphosphatase pseudogene 7 pseudo DUTP7 deoxyuridine triphosphatase pseudogene 7 O - 20121230 -9606 100873914 DUTP8 - - HGNC:39521 4 - deoxyuridine triphosphatase pseudogene 8 pseudo DUTP8 deoxyuridine triphosphatase pseudogene 8 O - 20121230 -9606 100873915 DMD-AS2 - - HGNC:40184 X - DMD antisense RNA 2 miscRNA DMD-AS2 DMD antisense RNA 2 O - 20121021 -9606 100873916 DMD-AS3 - - HGNC:40185 X - DMD antisense RNA 3 miscRNA DMD-AS3 DMD antisense RNA 3 O - 20121021 -9606 100873917 LPP-AS1 - - HGNC:40346 3 - LPP antisense RNA 1 miscRNA LPP-AS1 LPP antisense RNA 1 O - 20121021 -9606 100873918 MME-AS1 - - HGNC:40376 3 - MME antisense RNA 1 miscRNA MME-AS1 MME antisense RNA 1 O - 20121021 -9606 100873919 NDP-AS1 - - HGNC:40395 X - NDP antisense RNA 1 miscRNA NDP-AS1 NDP antisense RNA 1 O - 20121021 -9606 100873920 NHS-AS1 - - HGNC:40403 X - NHS antisense RNA 1 miscRNA NHS-AS1 NHS antisense RNA 1 O - 20121021 -9606 100873921 SYP-AS1 - - HGNC:40571 X - SYP antisense RNA 1 miscRNA SYP-AS1 SYP antisense RNA 1 O - 20121021 -9606 100873922 ZFX-AS1 - - HGNC:40617 X - ZFX antisense RNA 1 miscRNA ZFX-AS1 ZFX antisense RNA 1 O - 20121230 -9606 100873923 HYI-AS1 - - HGNC:41173 1 - HYI antisense RNA 1 miscRNA HYI-AS1 HYI antisense RNA 1 O - 20121021 -9606 100873924 HLA-AS1 - - HGNC:42509 1 - HLA antisense RNA 1 miscRNA HLA-AS1 HLA antisense RNA 1 O - 20121021 -9606 100873925 DMD-AS1 - - HGNC:42629 X - DMD antisense RNA 1 miscRNA DMD-AS1 DMD antisense RNA 1 O - 20121021 -9606 100873926 TAB3-AS2 - - HGNC:40013 X - TAB3 antisense RNA 2 miscRNA TAB3-AS2 TAB3 antisense RNA 2 O - 20121021 -9606 100873927 CA5B-AS1 - - HGNC:40115 X - CA5B antisense RNA 1 miscRNA CA5B-AS1 CA5B antisense RNA 1 O - 20121021 -9606 100873928 CASK-AS1 - - HGNC:40126 X - CASK antisense RNA 1 miscRNA CASK-AS1 CASK antisense RNA 1 O - 20121021 -9606 100873929 VCAN-AS1 - - HGNC:40163 5 - VCAN antisense RNA 1 miscRNA VCAN-AS1 VCAN antisense RNA 1 O - 20121021 -9606 100873930 DLG3-AS1 - - HGNC:40182 X - DLG3 antisense RNA 1 miscRNA DLG3-AS1 DLG3 antisense RNA 1 O - 20121021 -9606 100873931 DLX6-AS2 - - HGNC:40183 7 - DLX6 antisense RNA 2 miscRNA DLX6-AS2 DLX6 antisense RNA 2 O - 20121021 -9606 100873932 DPYD-AS1 - - HGNC:40195 1 - DPYD antisense RNA 1 miscRNA DPYD-AS1 DPYD antisense RNA 1 O - 20121230 -9606 100873933 DPYD-AS2 - - HGNC:40196 1 - DPYD antisense RNA 2 miscRNA DPYD-AS2 DPYD antisense RNA 2 O - 20121021 -9606 100873934 ETV5-AS1 - - HGNC:40222 3 - ETV5 antisense RNA 1 miscRNA ETV5-AS1 ETV5 antisense RNA 1 O - 20121021 -9606 100873935 MTOR-AS1 - - HGNC:40242 1 - MTOR antisense RNA 1 miscRNA MTOR-AS1 MTOR antisense RNA 1 O - 20121230 -9606 100873936 GRM7-AS2 - - HGNC:40266 3 - GRM7 antisense RNA 2 miscRNA GRM7-AS2 GRM7 antisense RNA 2 O - 20121021 -9606 100873937 GRM7-AS1 - - HGNC:40267 3 - GRM7 antisense RNA 1 miscRNA GRM7-AS1 GRM7 antisense RNA 1 O - 20121021 -9606 100873938 GYG2-AS1 - - HGNC:40270 X - GYG2 antisense RNA 1 miscRNA GYG2-AS1 GYG2 antisense RNA 1 O - 20121021 -9606 100873939 LNX1-AS1 - - HGNC:40345 4 - LNX1 antisense RNA 1 miscRNA LNX1-AS1 LNX1 antisense RNA 1 O - 20121230 -9606 100873940 MYLK-AS2 - - HGNC:40387 3 - MYLK antisense RNA 2 miscRNA MYLK-AS2 MYLK antisense RNA 2 O - 20121021 -9606 100873941 OPA1-AS1 - - HGNC:40421 3 - OPA1 antisense RNA 1 miscRNA OPA1-AS1 OPA1 antisense RNA 1 O - 20121230 -9606 100873942 PHEX-AS1 - - HGNC:40445 X - PHEX antisense RNA 1 miscRNA PHEX-AS1 PHEX antisense RNA 1 O - 20121230 -9606 100873943 PLS1-AS1 - - HGNC:40451 3 - PLS1 antisense RNA 1 miscRNA PLS1-AS1 PLS1 antisense RNA 1 O - 20121021 -9606 100873944 PRKX-AS1 - - HGNC:40479 X - PRKX antisense RNA 1 miscRNA PRKX-AS1 PRKX antisense RNA 1 O - 20121021 -9606 100873945 HLTF-AS1 - - HGNC:40554 3 - HLTF antisense RNA 1 miscRNA HLTF-AS1 HLTF antisense RNA 1 O - 20121230 -9606 100873946 VAV3-AS1 - - HGNC:40608 1 - VAV3 antisense RNA 1 miscRNA VAV3-AS1 VAV3 antisense RNA 1 O - 20121230 -9606 100873947 LMLN-AS1 - - HGNC:40738 3 - LMLN antisense RNA 1 miscRNA LMLN-AS1 LMLN antisense RNA 1 O - 20121021 -9606 100873948 NREP-AS1 - - HGNC:40780 5 - NREP antisense RNA 1 miscRNA NREP-AS1 NREP antisense RNA 1 O - 20121230 -9606 100873949 IPO9-AS1 - - HGNC:40892 1 - IPO9 antisense RNA 1 miscRNA IPO9-AS1 IPO9 antisense RNA 1 O - 20121021 -9606 100873950 ZIC4-AS1 - - HGNC:40920 3 - ZIC4 antisense RNA 1 miscRNA ZIC4-AS1 ZIC4 antisense RNA 1 O - 20121021 -9606 100873951 MLIP-AS1 - - HGNC:40963 6 - MLIP antisense RNA 1 miscRNA MLIP-AS1 MLIP antisense RNA 1 O - 20121021 -9606 100873952 SZT2-AS1 - - HGNC:41225 1 - SZT2 antisense RNA 1 miscRNA SZT2-AS1 SZT2 antisense RNA 1 O - 20121021 -9606 100873953 WWC3-AS1 - - HGNC:41236 X - WWC3 antisense RNA 1 miscRNA WWC3-AS1 WWC3 antisense RNA 1 O - 20121021 -9606 100873954 SNRK-AS1 - - HGNC:41269 3 - SNRK antisense RNA 1 miscRNA SNRK-AS1 SNRK antisense RNA 1 O - 20121230 -9606 100873955 LNX1-AS2 - - HGNC:41450 4 - LNX1 antisense RNA 2 miscRNA LNX1-AS2 LNX1 antisense RNA 2 O - 20121230 -9606 100873956 EAF1-AS1 - - HGNC:42328 3 - EAF1 antisense RNA 1 miscRNA EAF1-AS1 EAF1 antisense RNA 1 O - 20121021 -9606 100873957 FABP5P14 - FABP5L14 HGNC:31065 2 - fatty acid binding protein 5 pseudogene 14 pseudo FABP5P14 fatty acid binding protein 5 pseudogene 14 O - 20121230 -9606 100873958 FABP5P15 - FABP5L15 HGNC:31071 X - fatty acid binding protein 5 pseudogene 15 pseudo FABP5P15 fatty acid binding protein 5 pseudogene 15 O - 20121230 -9606 100873959 LINC00211 - NCRNA00211 HGNC:37459 2 - long intergenic non-protein coding RNA 211 miscRNA LINC00211 long intergenic non-protein coding RNA 211 O - 20121021 -9606 100873960 FTLP19 - - HGNC:37969 10 - ferritin, light polypeptide pseudogene 19 pseudo FTLP19 ferritin, light polypeptide pseudogene 19 O - 20121230 -9606 100873961 TRNAN38 - - HGNC:38584 1 - transfer RNA asparagine 38 (anticodon GUU) tRNA TRNAN38 transfer RNA asparagine 38 (anticodon GUU) O - 20120328 -9606 100873962 LINC00278 - NCRNA00278 HGNC:38712 Y - long intergenic non-protein coding RNA 278 miscRNA LINC00278 long intergenic non-protein coding RNA 278 O - 20121230 -9606 100873963 LINC00279 - NCRNA00279 HGNC:38724 Y - long intergenic non-protein coding RNA 279 miscRNA LINC00279 long intergenic non-protein coding RNA 279 O - 20121021 -9606 100873964 LINC00280 - NCRNA00280 HGNC:38803 Y - long intergenic non-protein coding RNA 280 miscRNA LINC00280 long intergenic non-protein coding RNA 280 O - 20121021 -9606 100873965 MED4-AS1 - MED4-AS HGNC:39213 13 - MED4 antisense RNA 1 miscRNA MED4-AS1 MED4 antisense RNA 1 O - 20121230 -9606 100873966 SPATA2P1 - - HGNC:39446 13 - spermatogenesis associated 2 pseudogene 1 pseudo SPATA2P1 spermatogenesis associated 2 pseudogene 1 O - 20121230 -9606 100873967 LSP1P2 - - HGNC:39717 3 - lymphocyte-specific protein 1 pseudogene 2 pseudo LSP1P2 lymphocyte-specific protein 1 pseudogene 2 O - 20121230 -9606 100873968 LMO7-AS1 - - HGNC:39885 13 - LMO7 antisense RNA 1 miscRNA LMO7-AS1 LMO7 antisense RNA 1 O - 20121021 -9606 100873969 GPC5-AS1 - - HGNC:39886 13 - GPC5 antisense RNA 1 miscRNA GPC5-AS1 GPC5 antisense RNA 1 O - 20121230 -9606 100873970 GPC5-AS2 - - HGNC:39887 13 - GPC5 antisense RNA 2 miscRNA GPC5-AS2 GPC5 antisense RNA 2 O - 20121021 -9606 100873971 NBEA-AS1 - - HGNC:39908 13 - NBEA antisense RNA 1 miscRNA NBEA-AS1 NBEA antisense RNA 1 O - 20121021 -9606 100873972 GPC6-AS1 - - HGNC:39909 13 - GPC6 antisense RNA 1 miscRNA GPC6-AS1 GPC6 antisense RNA 1 O - 20121021 -9606 100873973 GPC6-AS2 - - HGNC:39910 13 - GPC6 antisense RNA 2 miscRNA GPC6-AS2 GPC6 antisense RNA 2 O - 20121230 -9606 100873974 KCNC4-AS1 - - HGNC:39958 1 - KCNC4 antisense RNA 1 (head to head) miscRNA KCNC4-AS1 KCNC4 antisense RNA 1 (head to head) O - 20121021 -9606 100873975 CNTN4-AS1 - - HGNC:39985 3 - CNTN4 antisense RNA 1 miscRNA CNTN4-AS1 CNTN4 antisense RNA 1 O - 20121021 -9606 100873976 CNTN4-AS2 - - HGNC:39986 3 - CNTN4 antisense RNA 2 miscRNA CNTN4-AS2 CNTN4 antisense RNA 2 O - 20121230 -9606 100873977 RBMS3-AS1 - - HGNC:39987 3 - RBMS3 antisense RNA 1 miscRNA RBMS3-AS1 RBMS3 antisense RNA 1 O - 20121021 -9606 100873978 RBMS3-AS2 - - HGNC:39988 3 - RBMS3 antisense RNA 2 miscRNA RBMS3-AS2 RBMS3 antisense RNA 2 O - 20121021 -9606 100873979 RBMS3-AS3 - - HGNC:39989 3 - RBMS3 antisense RNA 3 miscRNA RBMS3-AS3 RBMS3 antisense RNA 3 O - 20121021 -9606 100873980 RERG-AS1 - - HGNC:39990 12 - RERG antisense RNA 1 miscRNA RERG-AS1 RERG antisense RNA 1 O - 20121021 -9606 100873981 ANO1-AS1 - - HGNC:40016 11 - ANO1 antisense RNA 1 miscRNA ANO1-AS1 ANO1 antisense RNA 1 O - 20121021 -9606 100873982 ABCC5-AS1 - - HGNC:40055 3 - ABCC5 antisense RNA 1 miscRNA ABCC5-AS1 ABCC5 antisense RNA 1 O - 20121230 -9606 100873983 MAGI1-AS1 - - HGNC:40091 3 - MAGI1 antisense RNA 1 miscRNA MAGI1-AS1 MAGI1 antisense RNA 1 O - 20121230 -9606 100873984 CHRM3-AS1 - - HGNC:40150 1 - CHRM3 antisense RNA 1 miscRNA CHRM3-AS1 CHRM3 antisense RNA 1 O - 20121021 -9606 100873985 MED14-AS1 - - HGNC:40162 X - MED14 antisense RNA 1 miscRNA MED14-AS1 MED14 antisense RNA 1 O - 20121021 -9606 100873986 FGF12-AS1 - - HGNC:40234 3 - FGF12 antisense RNA 1 miscRNA FGF12-AS1 FGF12 antisense RNA 1 O - 20121021 -9606 100873987 FGF12-AS2 - - HGNC:40235 3 - FGF12 antisense RNA 2 miscRNA FGF12-AS2 FGF12 antisense RNA 2 O - 20121021 -9606 100873988 FGF12-AS3 - - HGNC:40236 3 - FGF12 antisense RNA 3 miscRNA FGF12-AS3 FGF12 antisense RNA 3 O - 20121021 -9606 100873989 GRM5-AS1 - - HGNC:40265 11 - GRM5 antisense RNA 1 miscRNA GRM5-AS1 GRM5 antisense RNA 1 O - 20121230 -9606 100873990 HCFC1-AS1 - - HGNC:40273 X - HCFC1 antisense RNA 1 miscRNA HCFC1-AS1 HCFC1 antisense RNA 1 O - 20121021 -9606 100873991 IGBP1-AS1 - - HGNC:40295 X - IGBP1 antisense RNA 1 miscRNA IGBP1-AS1 IGBP1 antisense RNA 1 O - 20121021 -9606 100873992 ITGB5-AS1 - - HGNC:40309 3 - ITGB5 antisense RNA 1 miscRNA ITGB5-AS1 ITGB5 antisense RNA 1 O - 20121021 -9606 100873993 ITIH4-AS1 - - HGNC:40310 3 - ITIH4 antisense RNA 1 miscRNA ITIH4-AS1 ITIH4 antisense RNA 1 O - 20121021 -9606 100873994 ITPKB-AS1 - - HGNC:40312 1 - ITPKB antisense RNA 1 miscRNA ITPKB-AS1 ITPKB antisense RNA 1 O - 20121021 -9606 100873995 KCND3-AS1 - - HGNC:40317 1 - KCND3 antisense RNA 1 miscRNA KCND3-AS1 KCND3 antisense RNA 1 O - 20121021 -9606 100873996 KCNQ5-AS2 - - HGNC:40322 6 - KCNQ5 antisense RNA 2 miscRNA KCNQ5-AS2 KCNQ5 antisense RNA 2 O - 20121021 -9606 100873997 KCNQ5-AS1 - - HGNC:40323 6 - KCNQ5 antisense RNA 1 miscRNA KCNQ5-AS1 KCNQ5 antisense RNA 1 O - 20121230 -9606 100873998 MEIS1-AS2 - - HGNC:40370 2 - MEIS1 antisense RNA 2 miscRNA MEIS1-AS2 MEIS1 antisense RNA 2 O - 20121021 -9606 100873999 MEIS1-AS1 - - HGNC:40371 2 - MEIS1 antisense RNA 1 miscRNA MEIS1-AS1 MEIS1 antisense RNA 1 O - 20121021 -9606 100874000 MKRN2-AS1 - - HGNC:40375 3 - MKRN2 antisense RNA 1 miscRNA MKRN2-AS1 MKRN2 antisense RNA 1 O - 20121021 -9606 100874001 NCBP2-AS1 - - HGNC:40392 3 - NCBP2 antisense RNA 1 miscRNA NCBP2-AS1 NCBP2 antisense RNA 1 O - 20121021 -9606 100874002 OXCT1-AS1 - - HGNC:40423 5 - OXCT1 antisense RNA 1 miscRNA OXCT1-AS1 OXCT1 antisense RNA 1 O - 20121021 -9606 100874003 PLCL2-AS1 - - HGNC:40449 3 - PLCL2 antisense RNA 1 miscRNA PLCL2-AS1 PLCL2 antisense RNA 1 O - 20121021 -9606 100874004 PPEF1-AS1 - - HGNC:40463 X - PPEF1 antisense RNA 1 miscRNA PPEF1-AS1 PPEF1 antisense RNA 1 O - 20121021 -9606 100874005 SIAH2-AS1 - - HGNC:40526 3 - SIAH2 antisense RNA 1 miscRNA SIAH2-AS1 SIAH2 antisense RNA 1 O - 20121021 -9606 100874006 TTC3-AS1 - - HGNC:40595 21 - TTC3 antisense RNA 1 miscRNA TTC3-AS1 TTC3 antisense RNA 1 O - 20121021 -9606 100874007 VIPR1-AS1 - - HGNC:40610 3 - VIPR1 antisense RNA 1 miscRNA VIPR1-AS1 VIPR1 antisense RNA 1 O - 20121021 -9606 100874008 WNT5A-AS1 - - HGNC:40616 3 - WNT5A antisense RNA 1 miscRNA WNT5A-AS1 WNT5A antisense RNA 1 O - 20121021 -9606 100874009 BIRC6-AS1 - pal3 HGNC:40641 2 - BIRC6 antisense RNA 1 miscRNA BIRC6-AS1 BIRC6 antisense RNA 1 O - 20121021 -9606 100874010 NLGN1-AS1 - - HGNC:40676 3 - NLGN1 antisense RNA 1 miscRNA NLGN1-AS1 NLGN1 antisense RNA 1 O - 20121021 -9606 100874011 XIRP2-AS1 - - HGNC:40679 2 - XIRP2 antisense RNA 1 miscRNA XIRP2-AS1 XIRP2 antisense RNA 1 O - 20121021 -9606 100874012 NAV2-AS5 - - HGNC:40740 11 11p15.1 NAV2 antisense RNA 5 miscRNA NAV2-AS5 NAV2 antisense RNA 5 O - 20121230 -9606 100874013 NAV2-AS3 - - HGNC:40742 11 - NAV2 antisense RNA 3 miscRNA NAV2-AS3 NAV2 antisense RNA 3 O - 20121021 -9606 100874014 NAV2-AS2 - - HGNC:40743 11 - NAV2 antisense RNA 2 miscRNA NAV2-AS2 NAV2 antisense RNA 2 O - 20121021 -9606 100874015 NAV2-AS1 - - HGNC:40744 11 - NAV2 antisense RNA 1 miscRNA NAV2-AS1 NAV2 antisense RNA 1 O - 20121021 -9606 100874016 SYNPR-AS1 - - HGNC:40774 3 - SYNPR antisense RNA 1 miscRNA SYNPR-AS1 SYNPR antisense RNA 1 O - 20121230 -9606 100874017 NICN1-AS1 - - HGNC:40838 3 - NICN1 antisense RNA 1 miscRNA NICN1-AS1 NICN1 antisense RNA 1 O - 20121021 -9606 100874018 EPN2-AS1 - - HGNC:40849 17 - EPN2 antisense RNA 1 miscRNA EPN2-AS1 EPN2 antisense RNA 1 O - 20121230 -9606 100874019 KLHL6-AS1 - - HGNC:40850 3 - KLHL6 antisense RNA 1 miscRNA KLHL6-AS1 KLHL6 antisense RNA 1 O - 20121021 -9606 100874020 MAGI2-AS1 - - HGNC:40860 7 - MAGI2 antisense RNA 1 miscRNA MAGI2-AS1 MAGI2 antisense RNA 1 O - 20121021 -9606 100874021 MAGI2-AS2 - - HGNC:40861 7 - MAGI2 antisense RNA 2 miscRNA MAGI2-AS2 MAGI2 antisense RNA 2 O - 20121230 -9606 100874022 ATG10-AS1 - - HGNC:40914 5 - ATG10 antisense RNA 1 miscRNA ATG10-AS1 ATG10 antisense RNA 1 O - 20121021 -9606 100874023 WDFY3-AS1 - - HGNC:40935 4 - WDFY3 antisense RNA 1 miscRNA WDFY3-AS1 WDFY3 antisense RNA 1 O - 20121021 -9606 100874024 TRPC7-AS1 - - HGNC:40936 5 - TRPC7 antisense RNA 1 miscRNA TRPC7-AS1 TRPC7 antisense RNA 1 O - 20121021 -9606 100874025 GFOD1-AS1 - - HGNC:40956 6 - GFOD1 antisense RNA 1 miscRNA GFOD1-AS1 GFOD1 antisense RNA 1 O - 20121021 -9606 100874026 ARMC2-AS1 - - HGNC:41008 6 - ARMC2 antisense RNA 1 miscRNA ARMC2-AS1 ARMC2 antisense RNA 1 O - 20121021 -9606 100874027 TPRG1-AS2 - - HGNC:41062 3 - TPRG1 antisense RNA 2 miscRNA TPRG1-AS2 TPRG1 antisense RNA 2 O - 20121230 -9606 100874028 SGOL1-AS1 - - HGNC:41081 3 - SGOL1 antisense RNA 1 miscRNA SGOL1-AS1 SGOL1 antisense RNA 1 O - 20121230 -9606 100874029 WDR52-AS1 - - HGNC:41113 3 - WDR52 antisense RNA 1 miscRNA WDR52-AS1 WDR52 antisense RNA 1 O - 20121230 -9606 100874030 SIDT1-AS1 - - HGNC:41126 3 - SIDT1 antisense RNA 1 miscRNA SIDT1-AS1 SIDT1 antisense RNA 1 O - 20121021 -9606 100874031 AGBL5-AS1 - - HGNC:41133 2 - AGBL5 antisense RNA 1 miscRNA AGBL5-AS1 AGBL5 antisense RNA 1 O - 20121021 -9606 100874032 PRRT3-AS1 - - HGNC:41151 3 - PRRT3 antisense RNA 1 miscRNA PRRT3-AS1 PRRT3 antisense RNA 1 O - 20121230 -9606 100874033 SPIN4-AS1 - - HGNC:41177 X - SPIN4 antisense RNA 1 miscRNA SPIN4-AS1 SPIN4 antisense RNA 1 O - 20121021 -9606 100874034 UBXN7-AS1 - - HGNC:41227 3 - UBXN7 antisense RNA 1 miscRNA UBXN7-AS1 UBXN7 antisense RNA 1 O - 20121021 -9606 100874035 PLCH1-AS1 - - HGNC:41231 3 - PLCH1 antisense RNA 1 miscRNA PLCH1-AS1 PLCH1 antisense RNA 1 O - 20121021 -9606 100874036 PLCH1-AS2 - - HGNC:41232 3 - PLCH1 antisense RNA 2 miscRNA PLCH1-AS2 PLCH1 antisense RNA 2 O - 20121021 -9606 100874037 CADM2-AS2 - - HGNC:41247 3 - CADM2 antisense RNA 2 miscRNA CADM2-AS2 CADM2 antisense RNA 2 O - 20121230 -9606 100874038 CADM2-AS1 - - HGNC:41248 3 - CADM2 antisense RNA 1 miscRNA CADM2-AS1 CADM2 antisense RNA 1 O - 20121021 -9606 100874039 THOC7-AS1 - - HGNC:41249 3 - THOC7 antisense RNA 1 miscRNA THOC7-AS1 THOC7 antisense RNA 1 O - 20121021 -9606 100874040 PEX5L-AS1 - - HGNC:41251 3 - PEX5L antisense RNA 1 miscRNA PEX5L-AS1 PEX5L antisense RNA 1 O - 20121021 -9606 100874041 MACC1-AS1 - - HGNC:41257 7 - MACC1 antisense RNA 1 miscRNA MACC1-AS1 MACC1 antisense RNA 1 O - 20121230 -9606 100874042 HM13-AS1 - - HGNC:41940 20 - HM13 antisense RNA 1 miscRNA HM13-AS1 HM13 antisense RNA 1 O - 20121230 -9606 100874043 TPRG1-AS1 - - HGNC:42391 3 - TPRG1 antisense RNA 1 miscRNA TPRG1-AS1 TPRG1 antisense RNA 1 O - 20121021 -9606 100874044 HHATL-AS1 - - HGNC:42439 3 - HHATL antisense RNA 1 miscRNA HHATL-AS1 HHATL antisense RNA 1 O - 20121021 -9606 100874045 MEAF6P1 - - HGNC:42660 2 - MYST/Esa1-associated factor 6 pseudogene 1 pseudo MEAF6P1 MYST/Esa1-associated factor 6 pseudogene 1 O - 20121230 -9606 100874046 LINC00498 - - HGNC:43435 4 - long intergenic non-protein coding RNA 498 miscRNA LINC00498 long intergenic non-protein coding RNA 498 O - 20121021 -9606 100874047 LINC00499 - - HGNC:43436 4 - long intergenic non-protein coding RNA 499 miscRNA LINC00499 long intergenic non-protein coding RNA 499 O - 20121230 -9606 100874048 DGUOK-AS1 - - HGNC:43441 2 - DGUOK antisense RNA 1 miscRNA DGUOK-AS1 DGUOK antisense RNA 1 O - 20121230 -9606 100874049 LINC00505 - - HGNC:43556 1 - long intergenic non-protein coding RNA 505 miscRNA LINC00505 long intergenic non-protein coding RNA 505 O - 20121021 -9606 100874051 LZTS1-AS1 - - HGNC:43630 8 - LZTS1 antisense RNA 1 miscRNA LZTS1-AS1 LZTS1 antisense RNA 1 O - 20121230 -9606 100874052 LINC00534 - - HGNC:43643 8 - long intergenic non-protein coding RNA 534 miscRNA LINC00534 long intergenic non-protein coding RNA 534 O - 20121230 -9606 100874053 JRKL-AS1 - - HGNC:43670 11 - JRKL antisense RNA 1 miscRNA JRKL-AS1 JRKL antisense RNA 1 O - 20121230 -9606 100874054 LINC00568 - ncRNA-a1 HGNC:43713 1 - long intergenic non-protein coding RNA 568 miscRNA LINC00568 long intergenic non-protein coding RNA 568 O - 20121230 -9606 100874055 LINC00570 - ncRNA-a5 HGNC:43717 2 - long intergenic non-protein coding RNA 570 miscRNA LINC00570 long intergenic non-protein coding RNA 570 O - 20121230 -9606 100874056 NLGN4Y-AS1 - NLGN4Y-AS|NLGN4YAS HGNC:38793 Y - NLGN4Y antisense RNA 1 miscRNA NLGN4Y-AS1 NLGN4Y antisense RNA 1 O - 20121230 -9606 100874057 LINC00283 - NCRNA00283 HGNC:38809 13 - long intergenic non-protein coding RNA 283 miscRNA LINC00283 long intergenic non-protein coding RNA 283 O - 20121021 -9606 100874058 COX10-AS1 - COX10-AS|COX10AS HGNC:38873 17 - COX10 antisense RNA 1 miscRNA COX10-AS1 COX10 antisense RNA 1 O - 20121230 -9606 100874059 LINC00297 - NCRNA00297 HGNC:39210 13 - long intergenic non-protein coding RNA 297 miscRNA LINC00297 long intergenic non-protein coding RNA 297 O - 20121230 -9606 100874060 SPATA20P1 - - HGNC:39636 21 - spermatogenesis associated 20 pseudogene 1 pseudo SPATA20P1 spermatogenesis associated 20 pseudogene 1 O - 20121230 -9606 100874061 WASF3-AS1 - - HGNC:39841 13 - WASF3 antisense RNA 1 miscRNA WASF3-AS1 WASF3 antisense RNA 1 O - 20121021 -9606 100874062 CLYBL-AS1 - - HGNC:39893 13 - CLYBL antisense RNA 1 miscRNA CLYBL-AS1 CLYBL antisense RNA 1 O - 20121021 -9606 100874063 CLYBL-AS2 - - HGNC:39894 13 - CLYBL antisense RNA 2 miscRNA CLYBL-AS2 CLYBL antisense RNA 2 O - 20121021 -9606 100874064 PCDH9-AS2 - - HGNC:39896 13 - PCDH9 antisense RNA 2 miscRNA PCDH9-AS2 PCDH9 antisense RNA 2 O - 20121230 -9606 100874065 PCDH9-AS1 - - HGNC:39897 13 - PCDH9 antisense RNA 1 miscRNA PCDH9-AS1 PCDH9 antisense RNA 1 O - 20121021 -9606 100874066 LATS2-AS1 - - HGNC:39912 13 - LATS2 antisense RNA 1 miscRNA LATS2-AS1 LATS2 antisense RNA 1 O - 20121021 -9606 100874067 MYO16-AS2 - - HGNC:39914 13 - MYO16 antisense RNA 2 miscRNA MYO16-AS2 MYO16 antisense RNA 2 O - 20121021 -9606 100874068 GRTP1-AS1 - - HGNC:39917 13 - GRTP1 antisense RNA 1 miscRNA GRTP1-AS1 GRTP1 antisense RNA 1 O - 20121021 -9606 100874069 STK24-AS1 - - HGNC:39935 13 - STK24 antisense RNA 1 miscRNA STK24-AS1 STK24 antisense RNA 1 O - 20121021 -9606 100874070 USP12-AS1 - - HGNC:39961 13 - USP12 antisense RNA 1 miscRNA USP12-AS1 USP12 antisense RNA 1 O - 20121021 -9606 100874071 USP12-AS2 - - HGNC:39962 13 - USP12 antisense RNA 2 (head to head) miscRNA USP12-AS2 USP12 antisense RNA 2 (head to head) O - 20121021 -9606 100874072 SMAD9-AS1 - - HGNC:39963 13 - SMAD9 antisense RNA 1 miscRNA SMAD9-AS1 SMAD9 antisense RNA 1 O - 20121021 -9606 100874073 FREM2-AS1 - - HGNC:39964 13 - FREM2 antisense RNA 1 miscRNA FREM2-AS1 FREM2 antisense RNA 1 O - 20121021 -9606 100874074 DLEU7-AS1 - - HGNC:39966 13 - DLEU7 antisense RNA 1 miscRNA DLEU7-AS1 DLEU7 antisense RNA 1 O - 20121230 -9606 100874075 ARAP1-AS1 - - HGNC:39993 11 - ARAP1 antisense RNA 1 miscRNA ARAP1-AS1 ARAP1 antisense RNA 1 O - 20121021 -9606 100874076 ABHD11-AS2 - - HGNC:40012 7 - ABHD11 antisense RNA 2 miscRNA ABHD11-AS2 ABHD11 antisense RNA 2 O - 20120816 -9606 100874077 ATP1B3-AS1 - - HGNC:40088 3 - ATP1B3 antisense RNA 1 miscRNA ATP1B3-AS1 ATP1B3 antisense RNA 1 O - 20121021 -9606 100874078 EIF1AX-AS1 - - HGNC:40208 X - EIF1AX antisense RNA 1 miscRNA EIF1AX-AS1 EIF1AX antisense RNA 1 O - 20121021 -9606 100874079 EIF2B5-AS1 - - HGNC:40209 3 - EIF2B5 antisense RNA 1 miscRNA EIF2B5-AS1 EIF2B5 antisense RNA 1 O - 20121021 -9606 100874080 FARP1-AS1 - - HGNC:40229 13 - FARP1 antisense RNA 1 miscRNA FARP1-AS1 FARP1 antisense RNA 1 O - 20121021 -9606 100874081 FGF14-AS1 - - HGNC:40237 13 - FGF14 antisense RNA 1 miscRNA FGF14-AS1 FGF14 antisense RNA 1 O - 20121021 -9606 100874082 HTR2A-AS1 - - HGNC:40289 13 - HTR2A antisense RNA 1 miscRNA HTR2A-AS1 HTR2A antisense RNA 1 O - 20121021 -9606 100874083 KCNAB1-AS2 - - HGNC:40315 3 - KCNAB1 antisense RNA 2 miscRNA KCNAB1-AS2 KCNAB1 antisense RNA 2 O - 20121230 -9606 100874084 KCNAB1-AS1 - - HGNC:40316 3 - KCNAB1 antisense RNA 1 miscRNA KCNAB1-AS1 KCNAB1 antisense RNA 1 O - 20121230 -9606 100874085 NUCB1-AS1 - - HGNC:40419 19 - NUCB1 antisense RNA 1 miscRNA NUCB1-AS1 NUCB1 antisense RNA 1 O - 20121021 -9606 100874086 PCDH9-AS3 - - HGNC:40427 13 - PCDH9 antisense RNA 3 miscRNA PCDH9-AS3 PCDH9 antisense RNA 3 O - 20121230 -9606 100874087 PCDH9-AS4 - - HGNC:40428 13 - PCDH9 antisense RNA 4 miscRNA PCDH9-AS4 PCDH9 antisense RNA 4 O - 20121021 -9606 100874088 PCYT1B-AS1 - - HGNC:40431 X - PCYT1B antisense RNA 1 miscRNA PCYT1B-AS1 PCYT1B antisense RNA 1 O - 20121021 -9606 100874089 RUVBL1-AS1 - - HGNC:40514 3 - RUVBL1 antisense RNA 1 miscRNA RUVBL1-AS1 RUVBL1 antisense RNA 1 O - 20121021 -9606 100874090 SLC6A1-AS1 - - HGNC:40546 3 - SLC6A1 antisense RNA 1 miscRNA SLC6A1-AS1 SLC6A1 antisense RNA 1 O - 20121230 -9606 100874091 TM4SF1-AS1 - - HGNC:40587 3 - TM4SF1 antisense RNA 1 miscRNA TM4SF1-AS1 TM4SF1 antisense RNA 1 O - 20121021 -9606 100874092 UBE2E1-AS1 - - HGNC:40598 3 - UBE2E1 antisense RNA 1 miscRNA UBE2E1-AS1 UBE2E1 antisense RNA 1 O - 20121021 -9606 100874093 BRWD1-AS1 - - HGNC:40614 21 - BRWD1 antisense RNA 1 miscRNA BRWD1-AS1 BRWD1 antisense RNA 1 O - 20121230 -9606 100874094 ZNF197-AS1 - - HGNC:40620 3 - ZNF197 antisense RNA 1 miscRNA ZNF197-AS1 ZNF197 antisense RNA 1 O - 20121021 -9606 100874095 ADIPOQ-AS1 - - HGNC:40648 3 - ADIPOQ antisense RNA 1 miscRNA ADIPOQ-AS1 ADIPOQ antisense RNA 1 O - 20121230 -9606 100874096 DOCK9-AS1 - - HGNC:40672 13 - DOCK9 antisense RNA 1 miscRNA DOCK9-AS1 DOCK9 antisense RNA 1 O - 20121021 -9606 100874097 UBE2Q1-AS1 - - HGNC:40722 1 - UBE2Q1 antisense RNA 1 miscRNA UBE2Q1-AS1 UBE2Q1 antisense RNA 1 O - 20121021 -9606 100874098 ARPP21-AS1 - - HGNC:40785 3 - ARPP21 antisense RNA 1 miscRNA ARPP21-AS1 ARPP21 antisense RNA 1 O - 20121021 -9606 100874099 PDZRN3-AS1 - - HGNC:40814 3 - PDZRN3 antisense RNA 1 miscRNA PDZRN3-AS1 PDZRN3 antisense RNA 1 O - 20121021 -9606 100874100 STEAP2-AS1 - - HGNC:40820 7 - STEAP2 antisense RNA 1 miscRNA STEAP2-AS1 STEAP2 antisense RNA 1 O - 20121021 -9606 100874101 HDAC11-AS1 - - HGNC:40868 3 - HDAC11 antisense RNA 1 miscRNA HDAC11-AS1 HDAC11 antisense RNA 1 O - 20121021 -9606 100874102 HS6ST2-AS1 - - HGNC:40870 X - HS6ST2 antisense RNA 1 miscRNA HS6ST2-AS1 HS6ST2 antisense RNA 1 O - 20121230 -9606 100874103 SRGAP3-AS1 - - HGNC:40898 3 - SRGAP3 antisense RNA 1 miscRNA SRGAP3-AS1 SRGAP3 antisense RNA 1 O - 20121021 -9606 100874104 PLSCR5-AS1 - - HGNC:40907 3 - PLSCR5 antisense RNA 1 miscRNA PLSCR5-AS1 PLSCR5 antisense RNA 1 O - 20121021 -9606 100874105 PSPC1-AS1 - - HGNC:40915 13 - PSPC1 antisense RNA 1 miscRNA PSPC1-AS1 PSPC1 antisense RNA 1 O - 20121021 -9606 100874106 MTUS2-AS2 - - HGNC:40923 13 - MTUS2 antisense RNA 2 miscRNA MTUS2-AS2 MTUS2 antisense RNA 2 O - 20121021 -9606 100874107 MTUS2-AS1 hCG_2020170 - HGNC:40924 13 13q12.3 MTUS2 antisense RNA 1 miscRNA MTUS2-AS1 MTUS2 antisense RNA 1 O - 20121230 -9606 100874108 A2ML1-AS1 - - HGNC:41022 12 - A2ML1 antisense RNA 1 miscRNA A2ML1-AS1 A2ML1 antisense RNA 1 O - 20121021 -9606 100874109 CNOT10-AS1 - - HGNC:41031 3 - CNOT10 antisense RNA 1 miscRNA CNOT10-AS1 CNOT10 antisense RNA 1 O - 20121021 -9606 100874110 GLYCTK-AS1 - - HGNC:41043 3 - GLYCTK antisense RNA 1 miscRNA GLYCTK-AS1 GLYCTK antisense RNA 1 O - 20121021 -9606 100874111 STEAP3-AS1 - - HGNC:41053 2 - STEAP3 antisense RNA 1 miscRNA STEAP3-AS1 STEAP3 antisense RNA 1 O - 20121021 -9606 100874112 CCDC39-AS1 - - HGNC:41089 3 - CCDC39 antisense RNA 1 miscRNA CCDC39-AS1 CCDC39 antisense RNA 1 O - 20121021 -9606 100874113 YEATS2-AS1 - - HGNC:41101 3 - YEATS2 antisense RNA 1 miscRNA YEATS2-AS1 YEATS2 antisense RNA 1 O - 20121021 -9606 100874114 CCDC13-AS1 - - HGNC:41142 3 - CCDC13 antisense RNA 1 miscRNA CCDC13-AS1 CCDC13 antisense RNA 1 O - 20121230 -9606 100874115 PLCXD2-AS1 - - HGNC:41145 3 - PLCXD2 antisense RNA 1 miscRNA PLCXD2-AS1 PLCXD2 antisense RNA 1 O - 20121021 -9606 100874116 EGFLAM-AS3 - tbp1 HGNC:41167 5 - EGFLAM antisense RNA 3 miscRNA EGFLAM-AS3 EGFLAM antisense RNA 3 O - 20121021 -9606 100874117 EGFLAM-AS1 - - HGNC:41169 5 - EGFLAM antisense RNA 1 miscRNA EGFLAM-AS1 EGFLAM antisense RNA 1 O - 20121021 -9606 100874118 DDX26B-AS1 - - HGNC:41180 X - DDX26B antisense RNA 1 miscRNA DDX26B-AS1 DDX26B antisense RNA 1 O - 20121021 -9606 100874119 TCEAL3-AS1 - - HGNC:41191 X - TCEAL3 antisense RNA 1 miscRNA TCEAL3-AS1 TCEAL3 antisense RNA 1 O - 20121021 -9606 100874120 ZNF630-AS1 - - HGNC:41215 X - ZNF630 antisense RNA 1 miscRNA ZNF630-AS1 ZNF630 antisense RNA 1 O - 20121021 -9606 100874121 FRMPD4-AS1 - - HGNC:41222 X - FRMPD4 antisense RNA 1 miscRNA FRMPD4-AS1 FRMPD4 antisense RNA 1 O - 20121021 -9606 100874122 FRMPD3-AS1 - - HGNC:41239 X - FRMPD3 antisense RNA 1 miscRNA FRMPD3-AS1 FRMPD3 antisense RNA 1 O - 20121021 -9606 100874123 ZNRF3-AS1 - - HGNC:41927 22 - ZNRF3 antisense RNA 1 miscRNA ZNRF3-AS1 ZNRF3 antisense RNA 1 O - 20121230 -9606 100874124 RPLP1P13 - - HGNC:41973 13 - ribosomal protein, large, P1 pseudogene 13 pseudo RPLP1P13 ribosomal protein, large, P1 pseudogene 13 O - 20121230 -9606 100874125 LINC00329 - - HGNC:42038 13 - long intergenic non-protein coding RNA 329 miscRNA LINC00329 long intergenic non-protein coding RNA 329 O - 20121021 -9606 100874126 LINC00331 - NCRNA00331 HGNC:42048 13 - long intergenic non-protein coding RNA 331 miscRNA LINC00331 long intergenic non-protein coding RNA 331 O - 20121230 -9606 100874127 LINC00332 - NCRNA00332 HGNC:42049 13 - long intergenic non-protein coding RNA 332 miscRNA LINC00332 long intergenic non-protein coding RNA 332 O - 20121230 -9606 100874128 LINC00333 - NCRNA00333 HGNC:42050 13 - long intergenic non-protein coding RNA 333 miscRNA LINC00333 long intergenic non-protein coding RNA 333 O - 20121230 -9606 100874129 ENOX1-AS1 - - HGNC:42396 13 - ENOX1 antisense RNA 1 miscRNA ENOX1-AS1 ENOX1 antisense RNA 1 O - 20121021 -9606 100874130 ENOX1-AS2 - - HGNC:42397 13 - ENOX1 antisense RNA 2 miscRNA ENOX1-AS2 ENOX1 antisense RNA 2 O - 20121021 -9606 100874131 ZBTB20-AS4 - - HGNC:42423 3 - ZBTB20 antisense RNA 4 miscRNA ZBTB20-AS4 ZBTB20 antisense RNA 4 O - 20121021 -9606 100874132 SRGAP3-AS4 - - HGNC:42434 3 - SRGAP3 antisense RNA 4 miscRNA SRGAP3-AS4 SRGAP3 antisense RNA 4 O - 20121021 -9606 100874133 LINC00344 - NCRNA00344 HGNC:42501 13 - long intergenic non-protein coding RNA 344 miscRNA LINC00344 long intergenic non-protein coding RNA 344 O - 20121021 -9606 100874134 LINC00345 - - HGNC:42503 13 - long intergenic non-protein coding RNA 345 miscRNA LINC00345 long intergenic non-protein coding RNA 345 O - 20121021 -9606 100874135 LINC00349 - - HGNC:42667 13 - long intergenic non-protein coding RNA 349 miscRNA LINC00349 long intergenic non-protein coding RNA 349 O - 20121021 -9606 100874136 LINC00350 - - HGNC:42668 13 - long intergenic non-protein coding RNA 350 miscRNA LINC00350 long intergenic non-protein coding RNA 350 O - 20121021 -9606 100874137 LINC00351 - - HGNC:42669 13 - long intergenic non-protein coding RNA 351 miscRNA LINC00351 long intergenic non-protein coding RNA 351 O - 20121230 -9606 100874138 LINC00352 - - HGNC:42670 13 - long intergenic non-protein coding RNA 352 miscRNA LINC00352 long intergenic non-protein coding RNA 352 O - 20121021 -9606 100874139 LINC00353 - - HGNC:42671 13 - long intergenic non-protein coding RNA 353 miscRNA LINC00353 long intergenic non-protein coding RNA 353 O - 20121230 -9606 100874140 LINC00354 - - HGNC:42672 13 - long intergenic non-protein coding RNA 354 miscRNA LINC00354 long intergenic non-protein coding RNA 354 O - 20121021 -9606 100874141 LINC00356 - - HGNC:42675 13 - long intergenic non-protein coding RNA 356 miscRNA LINC00356 long intergenic non-protein coding RNA 356 O - 20121021 -9606 100874142 LINC00357 - - HGNC:42677 13 - long intergenic non-protein coding RNA 357 miscRNA LINC00357 long intergenic non-protein coding RNA 357 O - 20121021 -9606 100874143 LINC00358 - - HGNC:42678 13 - long intergenic non-protein coding RNA 358 miscRNA LINC00358 long intergenic non-protein coding RNA 358 O - 20121021 -9606 100874144 LINC00362 - - HGNC:42682 13 - long intergenic non-protein coding RNA 362 miscRNA LINC00362 long intergenic non-protein coding RNA 362 O - 20121021 -9606 100874145 LINC00364 - - HGNC:42686 13 - long intergenic non-protein coding RNA 364 miscRNA LINC00364 long intergenic non-protein coding RNA 364 O - 20121021 -9606 100874146 LINC00365 - - HGNC:42687 13 - long intergenic non-protein coding RNA 365 miscRNA LINC00365 long intergenic non-protein coding RNA 365 O - 20121021 -9606 100874147 LINC00366 - - HGNC:42688 13 - long intergenic non-protein coding RNA 366 miscRNA LINC00366 long intergenic non-protein coding RNA 366 O - 20121230 -9606 100874148 LINC00372 - - HGNC:42694 13 - long intergenic non-protein coding RNA 372 miscRNA LINC00372 long intergenic non-protein coding RNA 372 O - 20121021 -9606 100874149 LINC00378 - - HGNC:42704 13 - long intergenic non-protein coding RNA 378 miscRNA LINC00378 long intergenic non-protein coding RNA 378 O - 20121021 -9606 100874150 LINC00379 - - HGNC:42705 13 - long intergenic non-protein coding RNA 379 miscRNA LINC00379 long intergenic non-protein coding RNA 379 O - 20121230 -9606 100874151 LINC00381 hCG_1820717 - HGNC:42708 13 13q22.1 long intergenic non-protein coding RNA 381 miscRNA LINC00381 long intergenic non-protein coding RNA 381 O - 20121230 -9606 100874152 LINC00387 - - HGNC:42715 13 - long intergenic non-protein coding RNA 387 miscRNA LINC00387 long intergenic non-protein coding RNA 387 O - 20121021 -9606 100874153 LINC00388 - - HGNC:42716 13 - long intergenic non-protein coding RNA 388 miscRNA LINC00388 long intergenic non-protein coding RNA 388 O - 20121021 -9606 100874154 LINC00391 - - HGNC:42719 13 - long intergenic non-protein coding RNA 391 miscRNA LINC00391 long intergenic non-protein coding RNA 391 O - 20121021 -9606 100874155 LINC00392 - - HGNC:42720 13 - long intergenic non-protein coding RNA 392 miscRNA LINC00392 long intergenic non-protein coding RNA 392 O - 20121021 -9606 100874156 LINC00393 - - HGNC:42721 13 - long intergenic non-protein coding RNA 393 miscRNA LINC00393 long intergenic non-protein coding RNA 393 O - 20121021 -9606 100874157 LINC00395 - - HGNC:42723 13 - long intergenic non-protein coding RNA 395 miscRNA LINC00395 long intergenic non-protein coding RNA 395 O - 20121021 -9606 100874158 LINC00398 - - HGNC:42727 13 - long intergenic non-protein coding RNA 398 miscRNA LINC00398 long intergenic non-protein coding RNA 398 O - 20121230 -9606 100874159 LINC00400 - - HGNC:42729 13 - long intergenic non-protein coding RNA 400 miscRNA LINC00400 long intergenic non-protein coding RNA 400 O - 20121021 -9606 100874160 LINC00404 - - HGNC:42734 13 - long intergenic non-protein coding RNA 404 miscRNA LINC00404 long intergenic non-protein coding RNA 404 O - 20121021 -9606 100874161 LINC00411 - - HGNC:42744 13 - long intergenic non-protein coding RNA 411 miscRNA LINC00411 long intergenic non-protein coding RNA 411 O - 20121021 -9606 100874162 LINC00413 - - HGNC:42746 13 - long intergenic non-protein coding RNA 413 miscRNA LINC00413 long intergenic non-protein coding RNA 413 O - 20121021 -9606 100874163 LINC00415 - - HGNC:42748 13 - long intergenic non-protein coding RNA 415 miscRNA LINC00415 long intergenic non-protein coding RNA 415 O - 20121021 -9606 100874164 LINC00417 - - HGNC:42751 13 - long intergenic non-protein coding RNA 417 miscRNA LINC00417 long intergenic non-protein coding RNA 417 O - 20121021 -9606 100874167 LINC00423 - - HGNC:42758 13 - long intergenic non-protein coding RNA 423 miscRNA LINC00423 long intergenic non-protein coding RNA 423 O - 20121230 -9606 100874168 LINC00433 - - HGNC:42768 13 - long intergenic non-protein coding RNA 433 miscRNA LINC00433 long intergenic non-protein coding RNA 433 O - 20121230 -9606 100874169 LINC00434 - - HGNC:42769 13 - long intergenic non-protein coding RNA 434 miscRNA LINC00434 long intergenic non-protein coding RNA 434 O - 20121021 -9606 100874171 LINC00439 - - HGNC:42776 13 - long intergenic non-protein coding RNA 439 miscRNA LINC00439 long intergenic non-protein coding RNA 439 O - 20121230 -9606 100874172 LINC00440 - - HGNC:42777 13 - long intergenic non-protein coding RNA 440 miscRNA LINC00440 long intergenic non-protein coding RNA 440 O - 20121021 -9606 100874173 LINC00443 - - HGNC:42780 13 - long intergenic non-protein coding RNA 443 miscRNA LINC00443 long intergenic non-protein coding RNA 443 O - 20121230 -9606 100874174 LINC00444 - - HGNC:42781 13 - long intergenic non-protein coding RNA 444 miscRNA LINC00444 long intergenic non-protein coding RNA 444 O - 20121021 -9606 100874175 LINC00446 - - HGNC:42783 13 - long intergenic non-protein coding RNA 446 miscRNA LINC00446 long intergenic non-protein coding RNA 446 O - 20121230 -9606 100874176 LINC00448 - - HGNC:42785 13 - long intergenic non-protein coding RNA 448 miscRNA LINC00448 long intergenic non-protein coding RNA 448 O - 20121021 -9606 100874177 LINC00453 - - HGNC:42801 13 - long intergenic non-protein coding RNA 453 miscRNA LINC00453 long intergenic non-protein coding RNA 453 O - 20121021 -9606 100874178 LINC00454 - - HGNC:42802 13 - long intergenic non-protein coding RNA 454 miscRNA LINC00454 long intergenic non-protein coding RNA 454 O - 20121021 -9606 100874179 LINC00457 - - HGNC:42805 13 - long intergenic non-protein coding RNA 457 miscRNA LINC00457 long intergenic non-protein coding RNA 457 O - 20121230 -9606 100874180 LINC00459 - - HGNC:42808 13 - long intergenic non-protein coding RNA 459 miscRNA LINC00459 long intergenic non-protein coding RNA 459 O - 20121120 -9606 100874181 LINC00464 - - HGNC:42814 13 - long intergenic non-protein coding RNA 464 miscRNA LINC00464 long intergenic non-protein coding RNA 464 O - 20121021 -9606 100874182 LINC00424 - - HGNC:42815 13 - long intergenic non-protein coding RNA 424 miscRNA LINC00424 long intergenic non-protein coding RNA 424 O - 20121230 -9606 100874183 NCOR1P3 - - HGNC:42996 7 - nuclear receptor corepressor 1 pseudogene 3 pseudo NCOR1P3 nuclear receptor corepressor 1 pseudogene 3 O - 20121230 -9606 100874184 LINC00502 - - HGNC:43442 10 - long intergenic non-protein coding RNA 502 miscRNA LINC00502 long intergenic non-protein coding RNA 502 O - 20121230 -9606 100874185 FRMD6-AS2 - - HGNC:43637 14 - FRMD6 antisense RNA 2 miscRNA FRMD6-AS2 FRMD6 antisense RNA 2 O - 20121230 -9606 100874186 PLCB2-AS1 - - HGNC:43662 15 - PLCB2 antisense RNA 1 miscRNA PLCB2-AS1 PLCB2 antisense RNA 1 O - 20121021 -9606 100874187 LINC00559 - - HGNC:43703 13 - long intergenic non-protein coding RNA 559 miscRNA LINC00559 long intergenic non-protein coding RNA 559 O - 20121230 -9606 100874188 LINC00571 - - HGNC:43721 13 - long intergenic non-protein coding RNA 571 miscRNA LINC00571 long intergenic non-protein coding RNA 571 O - 20121230 -9606 100874189 NKX2-2-AS1 - NKX2-2AS HGNC:37154 20 - NKX2-2 antisense RNA 1 miscRNA NKX2-2-AS1 NKX2-2 antisense RNA 1 O - 20121021 -9606 100874190 SAMSN1-AS1 - - HGNC:39599 21 - SAMSN1 antisense RNA 1 miscRNA SAMSN1-AS1 SAMSN1 antisense RNA 1 O - 20121230 -9606 100874191 RANP2 - - HGNC:39857 7 - RAN, member RAS oncogene family pseudogene 2 pseudo RANP2 RAN, member RAS oncogene family pseudogene 2 O - 20121230 -9606 100874192 RANP7 - - HGNC:39862 3 - RAN, member RAS oncogene family pseudogene 7 pseudo RANP7 RAN, member RAS oncogene family pseudogene 7 O - 20121230 -9606 100874193 RANP9 - - HGNC:39864 8 - RAN, member RAS oncogene family pseudogene 9 pseudo RANP9 RAN, member RAS oncogene family pseudogene 9 O - 20121230 -9606 100874194 CLDN10-AS1 - - HGNC:39907 13 - CLDN10 antisense RNA 1 miscRNA CLDN10-AS1 CLDN10 antisense RNA 1 O - 20121230 -9606 100874195 DIAPH3-AS1 - - HGNC:39915 13 - DIAPH3 antisense RNA 1 miscRNA DIAPH3-AS1 DIAPH3 antisense RNA 1 O - 20121230 -9606 100874196 DIAPH3-AS2 - DIPAH3-AS2 HGNC:39916 13 - DIAPH3 antisense RNA 2 miscRNA DIAPH3-AS2 DIAPH3 antisense RNA 2 O - 20121230 -9606 100874197 EFCAB6-AS1 - - HGNC:39999 22 - EFCAB6 antisense RNA 1 miscRNA EFCAB6-AS1 EFCAB6 antisense RNA 1 O - 20121230 -9606 100874198 SHANK2-AS1 - - HGNC:40014 11 - SHANK2 antisense RNA 1 miscRNA SHANK2-AS1 SHANK2 antisense RNA 1 O - 20121230 -9606 100874199 SHANK2-AS2 - - HGNC:40015 11 - SHANK2 antisense RNA 2 miscRNA SHANK2-AS2 SHANK2 antisense RNA 2 O - 20121021 -9606 100874200 ARHGEF3-AS1 - - HGNC:40083 3 - ARHGEF3 antisense RNA 1 miscRNA ARHGEF3-AS1 ARHGEF3 antisense RNA 1 O - 20121230 -9606 100874201 B4GALT4-AS1 - - HGNC:40090 3 - B4GALT4 antisense RNA 1 miscRNA B4GALT4-AS1 B4GALT4 antisense RNA 1 O - 20121021 -9606 100874202 MIS18A-AS1 - - HGNC:40106 21 - MIS18A antisense RNA 1 miscRNA MIS18A-AS1 MIS18A antisense RNA 1 O - 20121021 -9606 100874203 COL4A2-AS1 - - HGNC:40156 13 - COL4A2 antisense RNA 1 miscRNA COL4A2-AS1 COL4A2 antisense RNA 1 O - 20121230 -9606 100874204 ALDH1L1-AS1 - - HGNC:40244 3 - ALDH1L1 antisense RNA 1 miscRNA ALDH1L1-AS1 ALDH1L1 antisense RNA 1 O - 20121230 -9606 100874205 ATP11A-AS1 - - HGNC:40645 13 - ATP11A antisense RNA 1 miscRNA ATP11A-AS1 ATP11A antisense RNA 1 O - 20121021 -9606 100874206 OSBPL10-AS1 - - HGNC:40767 3 - OSBPL10 antisense RNA 1 miscRNA OSBPL10-AS1 OSBPL10 antisense RNA 1 O - 20121230 -9606 100874207 ST3GAL6-AS1 - - HGNC:40828 3 - ST3GAL6 antisense RNA 1 miscRNA ST3GAL6-AS1 ST3GAL6 antisense RNA 1 O - 20121230 -9606 100874208 NDFIP2-AS1 - - HGNC:40844 13 - NDFIP2 antisense RNA 1 miscRNA NDFIP2-AS1 NDFIP2 antisense RNA 1 O - 20121230 -9606 100874209 TBC1D4-AS1 - - HGNC:40874 13 - TBC1D4 antisense RNA 1 miscRNA TBC1D4-AS1 TBC1D4 antisense RNA 1 O - 20121021 -9606 100874210 ZMYND10-AS1 - - HGNC:40890 3 - ZMYND10 antisense RNA 1 miscRNA ZMYND10-AS1 ZMYND10 antisense RNA 1 O - 20121021 -9606 100874211 MID1IP1-AS1 - - HGNC:40932 X - MID1IP1 antisense RNA 1 miscRNA MID1IP1-AS1 MID1IP1 antisense RNA 1 O - 20121021 -9606 100874212 MYCBP2-AS1 - - HGNC:41023 13 - MYCBP2 antisense RNA 1 miscRNA MYCBP2-AS1 MYCBP2 antisense RNA 1 O - 20121230 -9606 100874213 MYCBP2-AS2 - - HGNC:41024 13 - MYCBP2 antisense RNA 2 miscRNA MYCBP2-AS2 MYCBP2 antisense RNA 2 O - 20121021 -9606 100874214 TM4SF19-AS1 - - HGNC:41085 3 - TM4SF19 antisense RNA 1 miscRNA TM4SF19-AS1 TM4SF19 antisense RNA 1 O - 20121021 -9606 100874215 ATP13A4-AS1 - - HGNC:41095 3 - ATP13A4 antisense RNA 1 miscRNA ATP13A4-AS1 ATP13A4 antisense RNA 1 O - 20121021 -9606 100874216 ZNF385D-AS1 - - HGNC:41136 3 - ZNF385D antisense RNA 1 miscRNA ZNF385D-AS1 ZNF385D antisense RNA 1 O - 20121021 -9606 100874217 TBL1XR1-AS1 - - HGNC:41243 3 - TBL1XR1 antisense RNA 1 miscRNA TBL1XR1-AS1 TBL1XR1 antisense RNA 1 O - 20121021 -9606 100874218 ATP13A5-AS1 - - HGNC:41281 3 - ATP13A5 antisense RNA 1 miscRNA ATP13A5-AS1 ATP13A5 antisense RNA 1 O - 20121021 -9606 100874219 TMEM212-AS1 - - HGNC:41939 3 - TMEM212 antisense RNA 1 miscRNA TMEM212-AS1 TMEM212 antisense RNA 1 O - 20121021 -9606 100874220 PCNPP4 - - HGNC:41976 X - PEST containing nuclear protein pseudogene 4 pseudo PCNPP4 PEST containing nuclear protein pseudogene 4 O - 20121230 -9606 100874221 ZNF385D-AS2 - - HGNC:42420 3 - ZNF385D antisense RNA 2 miscRNA ZNF385D-AS2 ZNF385D antisense RNA 2 O - 20121021 -9606 100874222 POU4F1-AS1 - - HGNC:42700 13 - POU4F1 antisense RNA 1 miscRNA POU4F1-AS1 POU4F1 antisense RNA 1 O - 20121230 -9606 100874223 FTOP1 - - HGNC:43759 2 - fat mass and obesity associated pseudogene 1 pseudo FTOP1 fat mass and obesity associated pseudogene 1 O - 20121230 -9606 100874224 KRTAP10-13P - - HGNC:34213 21 - keratin associated protein 10-13, pseudogene pseudo KRTAP10-13P keratin associated protein 10-13, pseudogene O - 20121230 -9606 100874225 RPP40P1 - - HGNC:39769 X - ribonuclease P/MRP 40kDa subunit pseudogene 1 pseudo RPP40P1 ribonuclease P/MRP 40kDa subunit pseudogene 1 O - 20121230 -9606 100874226 ARHGEF7-AS1 - - HGNC:39816 13 - ARHGEF7 antisense RNA 1 miscRNA ARHGEF7-AS1 ARHGEF7 antisense RNA 1 O - 20121021 -9606 100874227 RANP3 - - HGNC:39858 11 - RAN, member RAS oncogene family pseudogene 3 pseudo RANP3 RAN, member RAS oncogene family pseudogene 3 O - 20121230 -9606 100874228 DCUN1D2-AS1 - - HGNC:39888 13 - DCUN1D2 antisense RNA 1 miscRNA DCUN1D2-AS1 DCUN1D2 antisense RNA 1 O - 20121021 -9606 100874229 DCUN1D2-AS2 - - HGNC:39889 13 - DCUN1D2 antisense RNA 2 miscRNA DCUN1D2-AS2 DCUN1D2 antisense RNA 2 O - 20121021 -9606 100874231 SPATA13-AS1 - - HGNC:39905 13 - SPATA13 antisense RNA 1 miscRNA SPATA13-AS1 SPATA13 antisense RNA 1 O - 20121230 -9606 100874232 C1QTNF9-AS1 - - HGNC:39906 13 - C1QTNF9 antisense RNA 1 miscRNA C1QTNF9-AS1 C1QTNF9 antisense RNA 1 O - 20121021 -9606 100874233 ARHGEF19-AS1 - - HGNC:39996 1 - ARHGEF19 antisense RNA 1 miscRNA ARHGEF19-AS1 ARHGEF19 antisense RNA 1 O - 20121021 -9606 100874234 CACNA1C-AS4 - - HGNC:40116 12 - CACNA1C antisense RNA 4 miscRNA CACNA1C-AS4 CACNA1C antisense RNA 4 O - 20121230 -9606 100874235 CACNA1C-AS2 - - HGNC:40118 12 - CACNA1C antisense RNA 2 miscRNA CACNA1C-AS2 CACNA1C antisense RNA 2 O - 20121021 -9606 100874236 COL18A1-AS2 - - HGNC:40155 21 - COL18A1 antisense RNA 2 miscRNA COL18A1-AS2 COL18A1 antisense RNA 2 O - 20121230 -9606 100874237 CACNA2D3-AS1 - - HGNC:40702 3 - CACNA2D3 antisense RNA 1 miscRNA CACNA2D3-AS1 CACNA2D3 antisense RNA 1 O - 20121230 -9606 100874238 ARHGEF7-AS2 - - HGNC:40717 13 - ARHGEF7 antisense RNA 2 miscRNA ARHGEF7-AS2 ARHGEF7 antisense RNA 2 O - 20121021 -9606 100874239 ARHGAP26-AS1 - - HGNC:40792 5 - ARHGAP26 antisense RNA 1 miscRNA ARHGAP26-AS1 ARHGAP26 antisense RNA 1 O - 20121230 -9606 100874240 STARD13-AS1 - - HGNC:40872 13 - STARD13 antisense RNA 1 miscRNA STARD13-AS1 STARD13 antisense RNA 1 O - 20121021 -9606 100874241 STARD13-AS2 - - HGNC:40873 13 - STARD13 antisense RNA 2 miscRNA STARD13-AS2 STARD13 antisense RNA 2 O - 20121230 -9606 100874242 PRICKLE2-AS2 - - HGNC:40917 3 - PRICKLE2 antisense RNA 2 miscRNA PRICKLE2-AS2 PRICKLE2 antisense RNA 2 O - 20121230 -9606 100874243 PRICKLE2-AS3 - - HGNC:40918 3 - PRICKLE2 antisense RNA 3 miscRNA PRICKLE2-AS3 PRICKLE2 antisense RNA 3 O - 20121230 -9606 100874244 NAALADL2-AS2 - - HGNC:41015 3 - NAALADL2 antisense RNA 2 miscRNA NAALADL2-AS2 NAALADL2 antisense RNA 2 O - 20121021 -9606 100874245 NAALADL2-AS1 - - HGNC:41016 3 - NAALADL2 antisense RNA 1 miscRNA NAALADL2-AS1 NAALADL2 antisense RNA 1 O - 20121021 -9606 100874246 ARHGAP31-AS1 - - HGNC:41235 3 - ARHGAP31 antisense RNA 1 miscRNA ARHGAP31-AS1 ARHGAP31 antisense RNA 1 O - 20121021 -9606 100874247 ANKRD33B-AS1 - - HGNC:41298 5 - ANKRD33B antisense RNA 1 miscRNA ANKRD33B-AS1 ANKRD33B antisense RNA 1 O - 20121021 -9606 100874248 USP24P1 - - HGNC:42014 13 - ubiquitin specific peptidase 24 pseudogene 1 pseudo USP24P1 ubiquitin specific peptidase 24 pseudogene 1 O - 20121230 -9606 100874249 DENND5B-AS1 - - HGNC:42517 12 - DENND5B antisense RNA 1 miscRNA DENND5B-AS1 DENND5B antisense RNA 1 O - 20121230 -9606 100874250 KIRREL3-AS1 - - HGNC:42655 11 - KIRREL3 antisense RNA 1 miscRNA KIRREL3-AS1 KIRREL3 antisense RNA 1 O - 20121021 -9606 100874251 KIRREL3-AS2 - - HGNC:42656 11 - KIRREL3 antisense RNA 2 miscRNA KIRREL3-AS2 KIRREL3 antisense RNA 2 O - 20121230 -9606 100874252 USP32P4 - - HGNC:43577 17 - ubiquitin specific peptidase 32 pseudogene 4 pseudo USP32P4 ubiquitin specific peptidase 32 pseudogene 4 O - 20121230 -9606 100874253 PDZK1IP1-AS1 - ncRNA-a4 HGNC:43716 1 - PDZK1IP1 antisense RNA 1 (tail to tail) miscRNA PDZK1IP1-AS1 PDZK1IP1 antisense RNA 1 (tail to tail) O - 20121230 -9606 100874254 JTBP1 - - HGNC:39180 22 - jumping translocation breakpoint pseudogene 1 pseudo JTBP1 jumping translocation breakpoint pseudogene 1 O - 20121230 -9606 100874255 RNASEH2B-AS1 - - HGNC:39967 13 - RNASEH2B antisense RNA 1 miscRNA RNASEH2B-AS1 RNASEH2B antisense RNA 1 O - 20121230 -9606 100874256 TNR-IT1 - - HGNC:41391 1 - TNR intronic transcript 1 (non-protein coding) miscRNA TNR-IT1 TNR intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874257 MTAPP1 - - HGNC:42442 3 - methylthioadenosine phosphorylase pseudogene 1 pseudo MTAPP1 methylthioadenosine phosphorylase pseudogene 1 O - 20121230 -9606 100874258 SCGB1D5P - SCGB1D1P1 HGNC:42735 4 - secretoglobin, family 1D, member 5, pseudogene pseudo SCGB1D5P secretoglobin, family 1D, member 5, pseudogene O - 20121230 -9606 100874259 SLC25A30-AS1 - - HGNC:42795 13 - SLC25A30 antisense RNA 1 miscRNA SLC25A30-AS1 SLC25A30 antisense RNA 1 O - 20121230 -9606 100874260 UBE2CP5 - - HGNC:43554 19 - ubiquitin-conjugating enzyme E2C pseudogene 5 pseudo UBE2CP5 ubiquitin-conjugating enzyme E2C pseudogene 5 O - 20121230 -9606 100874261 TMEM106A-AS1 - - HGNC:43658 17 - TMEM106A antisense RNA 1 (tail to tail) miscRNA TMEM106A-AS1 TMEM106A antisense RNA 1 (tail to tail) O - 20121230 -9606 100874262 UBE2D3P3 - - HGNC:39011 1 - ubiquitin-conjugating enzyme E2D 3 pseudogene 3 pseudo UBE2D3P3 ubiquitin-conjugating enzyme E2D 3 pseudogene 3 O - 20121230 -9606 100874263 AKT3-IT1 - - HGNC:41304 1 - AKT3 intronic transcript 1 (non-protein coding) miscRNA AKT3-IT1 AKT3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874264 AOAH-IT1 - - HGNC:41307 7 - AOAH intronic transcript 1 (non-protein coding) miscRNA AOAH-IT1 AOAH intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874265 LYST-IT1 - - HGNC:41319 1 - LYST intronic transcript 1 (non-protein coding) miscRNA LYST-IT1 LYST intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874266 LYST-AS1 - LYST-IT2 HGNC:41320 1 - LYST antisense RNA 1 miscRNA LYST-AS1 LYST antisense RNA 1 O - 20121122 -9606 100874267 DPYD-IT1 - - HGNC:41326 1 - DPYD intronic transcript 1 (non-protein coding) miscRNA DPYD-IT1 DPYD intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874268 E2F3-IT1 - - HGNC:41329 6 - E2F3 intronic transcript 1 (non-protein coding) miscRNA E2F3-IT1 E2F3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874269 AFF2-IT1 - - HGNC:41334 X - AFF2 intronic transcript 1 (non-protein coding) miscRNA AFF2-IT1 AFF2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874270 HAO2-IT1 - - HGNC:41342 1 - HAO2 intronic transcript 1 (non-protein coding) miscRNA HAO2-IT1 HAO2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874271 HTR4-IT1 - zmm2 HGNC:41345 5 - HTR4 intronic transcript 1 (non-protein coding) miscRNA HTR4-IT1 HTR4 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874272 KLF7-IT1 - - HGNC:41355 2 - KLF7 intronic transcript 1 (non-protein coding) miscRNA KLF7-IT1 KLF7 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874273 TGFA-IT1 - - HGNC:41389 2 - TGFA intronic transcript 1 (non-protein coding) miscRNA TGFA-IT1 TGFA intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874274 THRB-IT1 - - HGNC:41390 3 - THRB intronic transcript 1 (non-protein coding) miscRNA THRB-IT1 THRB intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874275 EMCN-IT3 - - HGNC:41418 4 - EMCN intronic transcript 3 (non-protein coding) miscRNA EMCN-IT3 EMCN intronic transcript 3 (non-protein coding) O - 20121230 -9606 100874276 EMCN-IT2 - - HGNC:41419 4 - EMCN intronic transcript 2 (non-protein coding) miscRNA EMCN-IT2 EMCN intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874277 EMCN-IT1 - - HGNC:41420 4 - EMCN intronic transcript 1 (non-protein coding) miscRNA EMCN-IT1 EMCN intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874278 ERI3-IT1 - - HGNC:41431 1 - ERI3 intronic transcript 1 (non-protein coding) miscRNA ERI3-IT1 ERI3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874279 NTM-IT1 - - HGNC:41435 11 - NTM intronic transcript 1 (non-protein coding) miscRNA NTM-IT1 NTM intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874280 NTM-IT2 - - HGNC:41436 11 - NTM intronic transcript 2 (non-protein coding) miscRNA NTM-IT2 NTM intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874281 NTM-IT3 - - HGNC:41437 11 - NTM intronic transcript 3 (non-protein coding) miscRNA NTM-IT3 NTM intronic transcript 3 (non-protein coding) O - 20121021 -9606 100874282 MLIP-IT1 - - HGNC:41461 6 - MLIP intronic transcript 1 (non-protein coding) miscRNA MLIP-IT1 MLIP intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874283 UPP2-IT1 - - HGNC:41467 2 - UPP2 intronic transcript 1 (non-protein coding) miscRNA UPP2-IT1 UPP2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874284 DNM3-IT1 - - HGNC:41494 1 - DNM3 intronic transcript 1 (non-protein coding) miscRNA DNM3-IT1 DNM3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874285 NRG1-IT2 - - HGNC:43634 8 - NRG1 intronic transcript 2 (non-protein coding) miscRNA NRG1-IT2 NRG1 intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874286 NRG1-IT3 - - HGNC:43635 8 - NRG1 intronic transcript 3 (non-protein coding) miscRNA NRG1-IT3 NRG1 intronic transcript 3 (non-protein coding) O - 20121230 -9606 100874287 TSPY24P - - HGNC:38725 Y - testis specific protein, Y-linked 24, pseudogene pseudo TSPY24P testis specific protein, Y-linked 24, pseudogene O - 20121209 -9606 100874288 TSPY25P - - HGNC:38726 Y - testis specific protein, Y-linked 25, pseudogene pseudo TSPY25P testis specific protein, Y-linked 25, pseudogene O - 20121230 -9606 100874289 VDAC1P12 - - HGNC:39680 13 - voltage-dependent anion channel 1 pseudogene 12 pseudo VDAC1P12 voltage-dependent anion channel 1 pseudogene 12 O - 20121230 -9606 100874290 RERG-IT1 - - HGNC:39991 12 - RERG intronic transcript 1 (non-protein coding) miscRNA RERG-IT1 RERG intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874291 ALMS1-IT1 - - HGNC:41305 2 - ALMS1 intronic transcript 1 (non-protein coding) miscRNA ALMS1-IT1 ALMS1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874292 CDC42-IT1 - - HGNC:41317 1 - CDC42 intronic transcript 1 (non-protein coding) miscRNA CDC42-IT1 CDC42 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874293 GPC5-IT1 - - HGNC:41340 13 - GPC5 intronic transcript 1 (non-protein coding) miscRNA GPC5-IT1 GPC5 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874294 HLCS-IT1 - bde1 HGNC:41343 21 - HLCS intronic transcript 1 (non-protein coding) miscRNA HLCS-IT1 HLCS intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874295 KCND3-IT1 - - HGNC:41350 1 - KCND3 intronic transcript 1 (non-protein coding) miscRNA KCND3-IT1 KCND3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874296 KCNH1-IT1 - - HGNC:41351 1 - KCNH1 intronic transcript 1 (non-protein coding) miscRNA KCNH1-IT1 KCNH1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874297 PROX1-IT1 - - HGNC:41372 1 - PROX1 intronic transcript 1 (non-protein coding) miscRNA PROX1-IT1 PROX1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874298 RASA2-IT1 - - HGNC:41376 3 - RASA2 intronic transcript 1 (non-protein coding) miscRNA RASA2-IT1 RASA2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874299 KDM5C-IT1 - - HGNC:41384 X - KDM5C intronic transcript 1 (non-protein coding) miscRNA KDM5C-IT1 KDM5C intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874300 SYNJ2-IT1 - - HGNC:41387 6 - SYNJ2 intronic transcript 1 (non-protein coding) miscRNA SYNJ2-IT1 SYNJ2 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874301 TSSC1-IT1 - - HGNC:41392 2 - TSSC1 intronic transcript 1 (non-protein coding) miscRNA TSSC1-IT1 TSSC1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874302 ITCH-IT1 - - HGNC:41397 20 - ITCH intronic transcript 1 (non-protein coding) miscRNA ITCH-IT1 ITCH intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874303 ALG9-IT1 - - HGNC:41409 11 - ALG9 intronic transcript 1 (non-protein coding) miscRNA ALG9-IT1 ALG9 intronic transcript 1 (non-protein coding) O - 20120404 -9606 100874305 NAV2-IT1 - - HGNC:41416 11 - NAV2 intronic transcript 1 (non-protein coding) miscRNA NAV2-IT1 NAV2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874306 ACAP2-IT1 - - HGNC:41426 3 - ACAP2 intronic transcript 1 (non-protein coding) miscRNA ACAP2-IT1 ACAP2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874307 RSF1-IT2 - - HGNC:41438 11 - RSF1 intronic transcript 2 (non-protein coding) miscRNA RSF1-IT2 RSF1 intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874308 RSF1-IT1 - - HGNC:41439 11 - RSF1 intronic transcript 1 (non-protein coding) miscRNA RSF1-IT1 RSF1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874309 EPN2-IT1 - - HGNC:41445 17 - EPN2 intronic transcript 1 (non-protein coding) miscRNA EPN2-IT1 EPN2 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874310 MAST4-IT1 - - HGNC:41448 5 - MAST4 intronic transcript 1 (non-protein coding) miscRNA MAST4-IT1 MAST4 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874311 ATG10-IT1 - - HGNC:41455 5 - ATG10 intronic transcript 1 (non-protein coding) miscRNA ATG10-IT1 ATG10 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874312 FNDC1-IT1 - - HGNC:41460 6 - FNDC1 intronic transcript 1 (non-protein coding) miscRNA FNDC1-IT1 FNDC1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874313 AGBL4-IT1 - - HGNC:41482 1 - AGBL4 intronic transcript 1 (non-protein coding) miscRNA AGBL4-IT1 AGBL4 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874314 TTLL7-IT1 - - HGNC:41486 1 - TTLL7 intronic transcript 1 (non-protein coding) miscRNA TTLL7-IT1 TTLL7 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874315 SIK3-IT1 - - HGNC:41495 11 - SIK3 intronic transcript 1 (non-protein coding) unknown SIK3-IT1 SIK3 intronic transcript 1 (non-protein coding) O - 20121120 -9606 100874317 FABP7P2 - - HGNC:41952 2 - fatty acid binding protein 7, brain pseudogene 2 pseudo FABP7P2 fatty acid binding protein 7, brain pseudogene 2 O - 20121230 -9606 100874318 UBAC2-IT1 - - HGNC:39685 13 - UBAC2 intronic transcript 1 (non-protein coding) miscRNA UBAC2-IT1 UBAC2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874319 NAP1L4P2 - - HGNC:39739 X - nucleosome assembly protein 1-like 4 pseudogene 2 pseudo NAP1L4P2 nucleosome assembly protein 1-like 4 pseudogene 2 O - 20121230 -9606 100874320 ZMYM2-IT1 - - HGNC:39936 13 - ZMYM2 intronic transcript 1 (non-protein coding) miscRNA ZMYM2-IT1 ZMYM2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874321 RASA3-IT1 - - HGNC:39938 13 - RASA3 intronic transcript 1 (non-protein coding) miscRNA RASA3-IT1 RASA3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874322 BACH1-IT2 - - HGNC:40007 21 - BACH1 intronic transcript 2 (non-protein coding) miscRNA BACH1-IT2 BACH1 intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874323 HOXA-AS4 - - HGNC:40281 7 - HOXA cluster antisense RNA 4 miscRNA HOXA-AS4 HOXA cluster antisense RNA 4 O - 20121230 -9606 100874324 ATP2B2-IT1 - - HGNC:41309 3 - ATP2B2 intronic transcript 1 (non-protein coding) miscRNA ATP2B2-IT1 ATP2B2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874325 ATP2B2-IT2 - - HGNC:41310 3 - ATP2B2 intronic transcript 2 (non-protein coding) miscRNA ATP2B2-IT2 ATP2B2 intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874326 DSCAM-IT1 - zag4 HGNC:41327 21 - DSCAM intronic transcript 1 (non-protein coding) miscRNA DSCAM-IT1 DSCAM intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874327 DSCR4-IT1 - - HGNC:41328 21 - DSCR4 intronic transcript 1 (non-protein coding) miscRNA DSCR4-IT1 DSCR4 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874328 EIF2B5-IT1 - - HGNC:41330 3 - EIF2B5 intronic transcript 1 (non-protein coding) miscRNA EIF2B5-IT1 EIF2B5 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874329 KCNJ6-IT1 - - HGNC:41352 21 - KCNJ6 intronic transcript 1 (non-protein coding) miscRNA KCNJ6-IT1 KCNJ6 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874330 KCNMB2-IT1 - - HGNC:41353 3 - KCNMB2 intronic transcript 1 (non-protein coding) miscRNA KCNMB2-IT1 KCNMB2 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874331 LARGE-IT1 - - HGNC:41357 22 - LARGE intronic transcript 1 (non-protein coding) miscRNA LARGE-IT1 LARGE intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874332 OPCML-IT2 - - HGNC:41365 11 - OPCML intronic transcript 2 (non-protein coding) miscRNA OPCML-IT2 OPCML intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874333 OPCML-IT1 - - HGNC:41366 11 - OPCML intronic transcript 1 (non-protein coding) miscRNA OPCML-IT1 OPCML intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874334 TCF7L1-IT1 - - HGNC:41388 2 - TCF7L1 intronic transcript 1 (non-protein coding) miscRNA TCF7L1-IT1 TCF7L1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874335 IMMP2L-IT1 - - HGNC:41402 7 - IMMP2L intronic transcript 1 (non-protein coding) miscRNA IMMP2L-IT1 IMMP2L intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874336 ARID4B-IT1 - - HGNC:41407 1 - ARID4B intronic transcript 1 (non-protein coding) miscRNA ARID4B-IT1 ARID4B intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874337 PLCB1-IT1 - - HGNC:41414 20 - PLCB1 intronic transcript 1 (non-protein coding) miscRNA PLCB1-IT1 PLCB1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874338 TRIM36-IT1 - - HGNC:41422 5 - TRIM36 intronic transcript 1 (non-protein coding) miscRNA TRIM36-IT1 TRIM36 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874339 ZNRF3-IT1 - - HGNC:41440 22 - ZNRF3 intronic transcript 1 (non-protein coding) miscRNA ZNRF3-IT1 ZNRF3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874340 CAMTA1-IT1 - - HGNC:41446 1 - CAMTA1 intronic transcript 1 (non-protein coding) miscRNA CAMTA1-IT1 CAMTA1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874342 RNF216-IT1 - - HGNC:41463 7 - RNF216 intronic transcript 1 (non-protein coding) miscRNA RNF216-IT1 RNF216 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874343 HS1BP3-IT1 - - HGNC:41474 2 - HS1BP3 intronic transcript 1 (non-protein coding) miscRNA HS1BP3-IT1 HS1BP3 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874344 FBXO36-IT1 - - HGNC:41489 2 - FBXO36 intronic transcript 1 (non-protein coding) miscRNA FBXO36-IT1 FBXO36 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874345 ZBTB40-IT1 - - HGNC:41493 1 - ZBTB40 intronic transcript 1 (non-protein coding) miscRNA ZBTB40-IT1 ZBTB40 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874346 NCKAP5-IT1 - - HGNC:41497 2 - NCKAP5 intronic transcript 1 (non-protein coding) miscRNA NCKAP5-IT1 NCKAP5 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874348 ZDHHC20P3 - - HGNC:39775 11 - zinc finger, DHHC-type containing 20 pseudogene 3 pseudo ZDHHC20P3 zinc finger, DHHC-type containing 20 pseudogene 3 O - 20121230 -9606 100874349 AKAP11-IT1 - - HGNC:39939 13 - AKPA11 intronic transcript 1 (non-protein coding) miscRNA AKAP11-IT1 AKPA11 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874350 HOXB-AS2 - - HGNC:40284 17 - HOXB cluster antisense RNA 2 miscRNA HOXB-AS2 HOXB cluster antisense RNA 2 O - 20121021 -9606 100874351 HOXB-AS4 - - HGNC:40285 17 - HOXB cluster antisense RNA 4 miscRNA HOXB-AS4 HOXB cluster antisense RNA 4 O - 20121021 -9606 100874352 AMMECR1-IT1 - - HGNC:41306 X - AMMECR1 intronic transcript 1 (non-protein coding) miscRNA AMMECR1-IT1 AMMECR1 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874353 RPS6KA2-IT1 - - HGNC:41378 6 - RPS6KA2 intronic transcript 1 (non-protein coding) miscRNA RPS6KA2-IT1 RPS6KA2 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874354 ST6GAL2-IT1 - - HGNC:41380 2 - ST6GAL2 intronic transcript 1 (non-protein coding) miscRNA ST6GAL2-IT1 ST6GAL2 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874355 ARHGEF9-IT1 - - HGNC:41401 X - ARHGEF9 intronic transcript 1 (non-protein coding) miscRNA ARHGEF9-IT1 ARHGEF9 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874356 TSPAN9-IT1 - - HGNC:41462 12 - TSPAN9 intronic transcript 1 (non-protein coding) miscRNA TSPAN9-IT1 TSPAN9 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874357 ANKRD44-IT1 - - HGNC:41477 2 - ANKRD44 intronic transcript 1 (non-protein coding) miscRNA ANKRD44-IT1 ANKRD44 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874358 KLHL22-IT1 - - HGNC:41481 22 - KLHL22 intronic transcript 1 (non-protein coding) miscRNA KLHL22-IT1 KLHL22 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874359 TMEM212-IT1 - - HGNC:41505 3 - TMEM212 intronic transcript 1 (non-protein coding) miscRNA TMEM212-IT1 TMEM212 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874360 GRPEL2P1 - - HGNC:41969 13 - GrpE-like 2, mitochondrial (E. coli) pseudogene 1 pseudo GRPEL2P1 GrpE-like 2, mitochondrial (E. coli) pseudogene 1 O - 20121230 -9606 100874361 PPP2R2B-IT1 - - HGNC:42984 5 - PPP2R2B intronic transcript 1 (non-protein coding) miscRNA PPP2R2B-IT1 PPP2R2B intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874362 HOXB-AS1 - - HGNC:43744 17 - HOXB cluster antisense RNA 1 miscRNA HOXB-AS1 HOXB cluster antisense RNA 1 O - 20121230 -9606 100874363 HOXC-AS1 - - HGNC:43749 12 - HOXC cluster antisense RNA 1 miscRNA HOXC-AS1 HOXC cluster antisense RNA 1 O - 20121021 -9606 100874364 HOXC-AS2 - - HGNC:43750 12 - HOXC cluster antisense RNA 2 miscRNA HOXC-AS2 HOXC cluster antisense RNA 2 O - 20121021 -9606 100874365 HOXC-AS3 - - HGNC:43751 12 - HOXC cluster antisense RNA 3 miscRNA HOXC-AS3 HOXC cluster antisense RNA 3 O - 20121021 -9606 100874366 HOXC-AS5 - - HGNC:43753 12 - HOXC cluster antisense RNA 5 miscRNA HOXC-AS5 HOXC cluster antisense RNA 5 O - 20121230 -9606 100874367 ZDHHC20-IT1 - - HGNC:39900 13 - ZDHHC20 intronic transcript 1 (non-protein coding) miscRNA ZDHHC20-IT1 ZDHHC20 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874368 CACNA1C-IT1 - - HGNC:41312 12 - CACNA1C intronic transcript 1 (non-protein coding) miscRNA CACNA1C-IT1 CACNA1C intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874369 CACNA1C-IT2 - - HGNC:41313 12 - CACNA1C intronic transcript 2 (non-protein coding) miscRNA CACNA1C-IT2 CACNA1C intronic transcript 2 (non-protein coding) O - 20121021 -9606 100874370 CACNA1C-IT3 - - HGNC:41314 12 - CACNA1C intronic transcript 3 (non-protein coding) miscRNA CACNA1C-IT3 CACNA1C intronic transcript 3 (non-protein coding) O - 20121230 -9606 100874371 ARHGEF7-IT1 - - HGNC:41408 13 - ARHGEF7 intronic transcript 1 (non-protein coding) miscRNA ARHGEF7-IT1 ARHGEF7 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874372 ARHGAP26-IT1 - - HGNC:41429 5 - ARHGAP26 intronic transcript 1 (non-protein coding) miscRNA ARHGAP26-IT1 ARHGAP26 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874373 STARD13-IT1 - - HGNC:41453 13 - STARD13 intronic transcript 1 (non-protein coding) miscRNA STARD13-IT1 STARD13 intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874374 ARHGEF38-IT1 - - HGNC:41483 4 - ARHGEF38 intronic transcript 1 (non-protein coding) miscRNA ARHGEF38-IT1 ARHGEF38 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874375 FAM155A-IT1 - - HGNC:41503 13 - FAM155A intronic transcript 1 (non-protein coding) miscRNA FAM155A-IT1 FAM155A intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874376 ANKRD33B-IT1 - - HGNC:41506 5 - ANKRD33B intronic transcript 1 (non-protein coding) miscRNA ANKRD33B-IT1 ANKRD33B intronic transcript 1 (non-protein coding) O - 20121021 -9606 100874377 SMIM2-IT1 - C13orf44-IT1 HGNC:41492 13 - SMIM2 intronic transcript 1 (non-protein coding) miscRNA SMIM2-IT1 SMIM2 intronic transcript 1 (non-protein coding) O - 20121230 -9606 100874378 PTGER4P3 - - HGNC:38498 9 - prostaglandin E receptor 4 (subtype EP4) pseudogene 3 pseudo PTGER4P3 prostaglandin E receptor 4 (subtype EP4) pseudogene 3 O - 20121230 -9606 100874379 POM121L13P - - HGNC:42635 13 - POM121 transmembrane nucleoporin-like 13, pseudogene pseudo POM121L13P POM121 transmembrane nucleoporin-like 13, pseudogene O - 20121230 -9606 100874380 DPPA5P2 - - HGNC:43754 15 - developmental pluripotency associated 5 pseudogene 2 pseudo DPPA5P2 developmental pluripotency associated 5 pseudogene 2 O - 20121230 -9606 100874381 NPIPP1 - - HGNC:35407 16 - nuclear pore complex interacting protein pseudogene 1 pseudo NPIPP1 nuclear pore complex interacting protein pseudogene 1 O - 20121230 -9606 100874382 USP9YP12 - - HGNC:38720 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 12 pseudo USP9YP12 ubiquitin specific peptidase 9, Y-linked pseudogene 12 O - 20121230 -9606 100874383 USP9YP22 - - HGNC:38758 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 22 pseudo USP9YP22 ubiquitin specific peptidase 9, Y-linked pseudogene 22 O - 20121230 -9606 100874384 USP9YP30 - - HGNC:38766 Y - ubiquitin specific peptidase 9, Y-linked pseudogene 30 pseudo USP9YP30 ubiquitin specific peptidase 9, Y-linked pseudogene 30 O - 20121209 -9606 100874385 HNRNPKP5 - - HGNC:42378 5 - heterogeneous nuclear ribonucleoprotein K pseudogene 5 pseudo HNRNPKP5 heterogeneous nuclear ribonucleoprotein K pseudogene 5 O - 20121230 -9606 100874386 OSTCP5 - - HGNC:42867 1 - oligosaccharyltransferase complex subunit pseudogene 5 pseudo OSTCP5 oligosaccharyltransferase complex subunit pseudogene 5 O - 20121230 -9606 100874387 OSTCP6 - - HGNC:42868 6 - oligosaccharyltransferase complex subunit pseudogene 6 pseudo OSTCP6 oligosaccharyltransferase complex subunit pseudogene 6 O - 20121230 -9606 100874388 OSTCP8 - - HGNC:42869 9 - oligosaccharyltransferase complex subunit pseudogene 8 pseudo OSTCP8 oligosaccharyltransferase complex subunit pseudogene 8 O - 20121230 -9606 100874389 CNOT4P1 - - HGNC:39272 13 - CCR4-NOT transcription complex, subunit 4 pseudogene 1 pseudo CNOT4P1 CCR4-NOT transcription complex, subunit 4 pseudogene 1 O - 20121230 -9606 100874390 RAC1P7 - - HGNC:42007 1 - ras-related C3 botulinum toxin substrate 1 pseudogene 7 pseudo RAC1P7 ras-related C3 botulinum toxin substrate 1 pseudogene 7 O - 20121230 -9606 100874391 OSTCP7 - - HGNC:42870 17 - oligosaccharyltransferase complex subunit pseudogene 7 pseudo OSTCP7 oligosaccharyltransferase complex subunit pseudogene 7 O - 20121230 -9606 100874392 ANKRD20A12P - - HGNC:43603 1 - ankyrin repeat domain 20 family, member A12, pseudogene pseudo ANKRD20A12P ankyrin repeat domain 20 family, member A12, pseudogene O - 20121230 -9606 100874393 EIF2AP1 - - HGNC:39495 7 - eukaryotic translation initiation factor 2A pseudogene 1 pseudo EIF2AP1 eukaryotic translation initiation factor 2A pseudogene 1 O - 20121230 -9606 100874394 EIF2AP2 - - HGNC:39496 7 - eukaryotic translation initiation factor 2A pseudogene 2 pseudo EIF2AP2 eukaryotic translation initiation factor 2A pseudogene 2 O - 20121230 -9606 100874395 EIF2AP3 - - HGNC:39497 7 - eukaryotic translation initiation factor 2A pseudogene 3 pseudo EIF2AP3 eukaryotic translation initiation factor 2A pseudogene 3 O - 20121230 -9606 100874396 HNRNPA1P24 - - HGNC:39542 3 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 24 pseudo HNRNPA1P24 heterogeneous nuclear ribonucleoprotein A1 pseudogene 24 O - 20121230 -9606 100874397 CDKN2AIPNLP3 - - HGNC:39853 13 - CDKN2A interacting protein N-terminal like pseudogene 3 pseudo CDKN2AIPNLP3 CDKN2A interacting protein N-terminal like pseudogene 3 O - 20121230 -9606 100874398 RAC1P8 - - HGNC:42005 13 - ras-related C3 botulinum toxin substrate 1 pseudogene 8 pseudo RAC1P8 ras-related C3 botulinum toxin substrate 1 pseudogene 8 O - 20121230 -9606 100874399 IMPDH1P10 - - HGNC:33965 2 - IMP (inosine monophosphate) dehydrogenase 1 pseudogene 10 pseudo IMPDH1P10 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 10 O - 20121230 -9606 100874400 HNRNPA1P18 - - HGNC:39445 13 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 pseudo HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 O - 20121230 -9606 100874401 EIF2AP4 - - HGNC:39498 10 - eukaryotic translation initiation factor 2A pseudogene 4 pseudo EIF2AP4 eukaryotic translation initiation factor 2A pseudogene 4 O - 20121230 -9606 100874402 HNRNPA1P19 - - HGNC:39537 17 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 19 pseudo HNRNPA1P19 heterogeneous nuclear ribonucleoprotein A1 pseudogene 19 O - 20121230 -9606 100874403 ERHP2 - - HGNC:41917 6 - enhancer of rudimentary homolog (Drosophila) pseudogene 2 pseudo ERHP2 enhancer of rudimentary homolog (Drosophila) pseudogene 2 O - 20121230 -9606 100874404 LINC00328-2P - NCRNA00328-2P|NCRNA00328B HGNC:42027 13 - long intergenic non-protein coding RNA 328-2, pseudogene pseudo LINC00328-2P long intergenic non-protein coding RNA 328-2, pseudogene O - 20121230 -9606 100874405 PPIAP27 - - HGNC:42646 13 - peptidylprolyl isomerase A (cyclophilin A) pseudogene 27 pseudo PPIAP27 peptidylprolyl isomerase A (cyclophilin A) pseudogene 27 O - 20121230 -9606 100874406 FAM106DP - FAM106D HGNC:38397 17 - family with sequence similarity 106, member D, pseudogene pseudo FAM106DP family with sequence similarity 106, member D, pseudogene O - 20121230 -9606 100874407 SNRPGP3 - - HGNC:39322 7 - small nuclear ribonucleoprotein polypeptide G pseudogene 3 pseudo SNRPGP3 small nuclear ribonucleoprotein polypeptide G pseudogene 3 O - 20121230 -9606 100874408 SNRPGP7 - - HGNC:39326 2 - small nuclear ribonucleoprotein polypeptide G pseudogene 7 pseudo SNRPGP7 small nuclear ribonucleoprotein polypeptide G pseudogene 7 O - 20121230 -9606 100874409 SNRPGP8 - - HGNC:39327 2 - small nuclear ribonucleoprotein polypeptide G pseudogene 8 pseudo SNRPGP8 small nuclear ribonucleoprotein polypeptide G pseudogene 8 O - 20121230 -9606 100874410 HMGN1P9 - - HGNC:39352 3 - high mobility group nucleosome binding domain 1 pseudogene pseudo HMGN1P9 high mobility group nucleosome binding domain 1 pseudogene O - 20121230 -9606 100874411 SNRPFP2 - - HGNC:39665 1 - small nuclear ribonucleoprotein polypeptide F pseudogene 2 pseudo SNRPFP2 small nuclear ribonucleoprotein polypeptide F pseudogene 2 O - 20121230 -9606 100874412 SNRPFP4 - - HGNC:39667 3 - small nuclear ribonucleoprotein polypeptide F pseudogene 4 pseudo SNRPFP4 small nuclear ribonucleoprotein polypeptide F pseudogene 4 O - 20121230 -9606 100874413 SNRPEP5 - - HGNC:43447 2 - small nuclear ribonucleoprotein polypeptide E pseudogene 5 pseudo SNRPEP5 small nuclear ribonucleoprotein polypeptide E pseudogene 5 O - 20121230 -9606 100874414 SNRPEP6 - - HGNC:43571 6 - small nuclear ribonucleoprotein polypeptide E pseudogene 6 pseudo SNRPEP6 small nuclear ribonucleoprotein polypeptide E pseudogene 6 O - 20121230 -9606 100874415 SNRPEP7 - - HGNC:43572 1 - small nuclear ribonucleoprotein polypeptide E pseudogene 7 pseudo SNRPEP7 small nuclear ribonucleoprotein polypeptide E pseudogene 7 O - 20121230 -9606 100874416 SNRPEP9 - - HGNC:43574 X - small nuclear ribonucleoprotein polypeptide E pseudogene 9 pseudo SNRPEP9 small nuclear ribonucleoprotein polypeptide E pseudogene 9 O - 20121230 -9606 100874417 TIMM8BP2 - - HGNC:39212 X - translocase of inner mitochondrial membrane 8B pseudogene 2 pseudo TIMM8BP2 translocase of inner mitochondrial membrane 8B pseudogene 2 O - 20121230 -9606 100874418 SNRPGP5 - - HGNC:39324 10 - small nuclear ribonucleoprotein polypeptide G pseudogene 5 pseudo SNRPGP5 small nuclear ribonucleoprotein polypeptide G pseudogene 5 O - 20121230 -9606 100874419 IPPKP1 - - HGNC:39390 13 - inositol 1,3,4,5,6-pentakisphosphate 2-kinase pseudogene 1 pseudo IPPKP1 inositol 1,3,4,5,6-pentakisphosphate 2-kinase pseudogene 1 O - 20121230 -9606 100874420 ARL2BPP5 - - HGNC:39449 5 - ADP-ribosylation factor-like 2 binding protein pseudogene 5 pseudo ARL2BPP5 ADP-ribosylation factor-like 2 binding protein pseudogene 5 O - 20121230 -9606 100874421 ARL2BPP6 - - HGNC:39450 5 - ADP-ribosylation factor-like 2 binding protein pseudogene 6 pseudo ARL2BPP6 ADP-ribosylation factor-like 2 binding protein pseudogene 6 O - 20121230 -9606 100874422 SNRPFP3 - - HGNC:39666 13 - small nuclear ribonucleoprotein polypeptide F pseudogene 3 pseudo SNRPFP3 small nuclear ribonucleoprotein polypeptide F pseudogene 3 O - 20121230 -9606 100874423 SNRPEP8 - - HGNC:43573 10 - small nuclear ribonucleoprotein polypeptide E pseudogene 8 pseudo SNRPEP8 small nuclear ribonucleoprotein polypeptide E pseudogene 8 O - 20121230 -9606 100874424 SNRPEP10 - - HGNC:43575 1 - small nuclear ribonucleoprotein polypeptide E pseudogene 10 pseudo SNRPEP10 small nuclear ribonucleoprotein polypeptide E pseudogene 10 O - 20121230 -9606 100874425 TIMM8BP1 - - HGNC:39211 13 - translocase of inner mitochondrial membrane 8B pseudogene 1 pseudo TIMM8BP1 translocase of inner mitochondrial membrane 8B pseudogene 1 O - 20121230 -9606 100874426 SNRPGP11 - - HGNC:39330 13 - small nuclear ribonucleoprotein polypeptide G pseudogene 11 pseudo SNRPGP11 small nuclear ribonucleoprotein polypeptide G pseudogene 11 O - 20121230 -9606 100874427 SNRPGP12 - - HGNC:39331 10 - small nuclear ribonucleoprotein polypeptide G pseudogene 12 pseudo SNRPGP12 small nuclear ribonucleoprotein polypeptide G pseudogene 12 O - 20121230 -9606 100874428 SNRPGP13 - - HGNC:39332 21 - small nuclear ribonucleoprotein polypeptide G pseudogene 13 pseudo SNRPGP13 small nuclear ribonucleoprotein polypeptide G pseudogene 13 O - 20121230 -9606 100874429 HMGN1P5 - - HGNC:39348 1 - high mobility group nucleosome binding domain 1 pseudogene 5 pseudo HMGN1P5 high mobility group nucleosome binding domain 1 pseudogene 5 O - 20121230 -9606 100874430 HMGN1P6 - - HGNC:39349 2 - high mobility group nucleosome binding domain 1 pseudogene 6 pseudo HMGN1P6 high mobility group nucleosome binding domain 1 pseudogene 6 O - 20121230 -9606 100874431 HMGN1P8 - - HGNC:39351 3 - high mobility group nucleosome binding domain 1 pseudogene 8 pseudo HMGN1P8 high mobility group nucleosome binding domain 1 pseudogene 8 O - 20121230 -9606 100874432 TCEAL4P1 - - HGNC:39582 13 - transcription elongation factor A (SII)-like 4 pseudogene 1 pseudo TCEAL4P1 transcription elongation factor A (SII)-like 4 pseudogene 1 O - 20121230 -9606 100874433 IQCJ-SCHIP1-AS1 - uaz98 HGNC:41303 3 - IQCJ-SCHIP1 readthrough antisense RNA 1 miscRNA IQCJ-SCHIP1-AS1 IQCJ-SCHIP1 readthrough antisense RNA 1 O - 20121021 -9606 100874434 SNRPGP14 - - HGNC:42039 13 - small nuclear ribonucleoprotein polypeptide G pseudogene 14 pseudo SNRPGP14 small nuclear ribonucleoprotein polypeptide G pseudogene 14 O - 20121230 -9606 100874435 HIGD1AP4 - - HGNC:43000 2 - HIG1 hypoxia inducible domain family, member 1A pseudogene 4 pseudo HIGD1AP4 HIG1 hypoxia inducible domain family, member 1A pseudogene 4 O - 20121230 -9606 100874436 HIGD1AP6 - - HGNC:43001 8 - HIG1 hypoxia inducible domain family, member 1A pseudogene 6 pseudo HIGD1AP6 HIG1 hypoxia inducible domain family, member 1A pseudogene 6 O - 20121230 -9606 100874437 HIGD1AP7 - - HGNC:43002 7 - HIG1 hypoxia inducible domain family, member 1A pseudogene 7 pseudo HIGD1AP7 HIG1 hypoxia inducible domain family, member 1A pseudogene 7 O - 20121230 -9606 100874438 HMGN1P10 - - HGNC:39353 3 - high mobility group nucleosome binding domain 1 pseudogene 10 pseudo HMGN1P10 high mobility group nucleosome binding domain 1 pseudogene 10 O - 20121230 -9606 100874439 HMGN1P13 - - HGNC:39357 5 - high mobility group nucleosome binding domain 1 pseudogene 13 pseudo HMGN1P13 high mobility group nucleosome binding domain 1 pseudogene 13 O - 20121230 -9606 100874440 HMGN1P14 - - HGNC:39358 5 - high mobility group nucleosome binding domain 1 pseudogene 14 pseudo HMGN1P14 high mobility group nucleosome binding domain 1 pseudogene 14 O - 20121230 -9606 100874441 HMGN1P15 - - HGNC:39359 5 - high mobility group nucleosome binding domain 1 pseudogene 15 pseudo HMGN1P15 high mobility group nucleosome binding domain 1 pseudogene 15 O - 20121230 -9606 100874442 HMGN1P16 - - HGNC:39360 5 - high mobility group nucleosome binding domain 1 pseudogene 16 pseudo HMGN1P16 high mobility group nucleosome binding domain 1 pseudogene 16 O - 20121230 -9606 100874443 HMGN1P17 - - HGNC:39361 5 - high mobility group nucleosome binding domain 1 pseudogene 17 pseudo HMGN1P17 high mobility group nucleosome binding domain 1 pseudogene 17 O - 20121230 -9606 100874444 HMGN1P18 - - HGNC:39362 7 - high mobility group nucleosome binding domain 1 pseudogene 18 pseudo HMGN1P18 high mobility group nucleosome binding domain 1 pseudogene 18 O - 20121230 -9606 100874445 HMGN1P19 - - HGNC:39363 7 - high mobility group nucleosome binding domain 1 pseudogene 19 pseudo HMGN1P19 high mobility group nucleosome binding domain 1 pseudogene 19 O - 20121230 -9606 100874446 HMGN1P33 - - HGNC:39377 X - high mobility group nucleosome binding domain 1 pseudogene 33 pseudo HMGN1P33 high mobility group nucleosome binding domain 1 pseudogene 33 O - 20121230 -9606 100874447 HMGN1P34 - - HGNC:39378 X - high mobility group nucleosome binding domain 1 pseudogene 34 pseudo HMGN1P34 high mobility group nucleosome binding domain 1 pseudogene 34 O - 20121230 -9606 100874448 HMGN1P35 - - HGNC:39379 X - high mobility group nucleosome binding domain 1 pseudogene 35 pseudo HMGN1P35 high mobility group nucleosome binding domain 1 pseudogene 35 O - 20121230 -9606 100874449 ARL2BPP10 - - HGNC:39454 22 - ADP-ribosylation factor-like 2 binding protein pseudogene 10 pseudo ARL2BPP10 ADP-ribosylation factor-like 2 binding protein pseudogene 10 O - 20121230 -9606 100874450 HIGD1AP2 - - HGNC:42642 13 - HIG1 hypoxia inducible domain family, member 1A pseudogene 2 pseudo HIGD1AP2 HIG1 hypoxia inducible domain family, member 1A pseudogene 2 O - 20121230 -9606 100874451 HIGD1AP8 - - HGNC:43003 12 - HIG1 hypoxia inducible domain family, member 1A pseudogene 8 pseudo HIGD1AP8 HIG1 hypoxia inducible domain family, member 1A pseudogene 8 O - 20121230 -9606 100874452 HIGD1AP9 - - HGNC:43004 12 - HIG1 hypoxia inducible domain family, member 1A pseudogene 9 pseudo HIGD1AP9 HIG1 hypoxia inducible domain family, member 1A pseudogene 9 O - 20121230 -9606 100874453 HIGD1AP11 - - HGNC:43006 1 - HIG1 hypoxia inducible domain family, member 1A pseudogene 11 pseudo HIGD1AP11 HIG1 hypoxia inducible domain family, member 1A pseudogene 11 O - 20121230 -9606 100874454 HIGD1AP13 - - HGNC:43008 4 - HIG1 hypoxia inducible domain family, member 1A pseudogene 13 pseudo HIGD1AP13 HIG1 hypoxia inducible domain family, member 1A pseudogene 13 O - 20121230 -9606 100874455 HIGD1AP14 - - HGNC:43009 4 - HIG1 hypoxia inducible domain family, member 1A pseudogene 14 pseudo HIGD1AP14 HIG1 hypoxia inducible domain family, member 1A pseudogene 14 O - 20121230 -9606 100874456 HIGD1AP18 - - HGNC:43013 8 - HIG1 hypoxia inducible domain family, member 1A pseudogene 18 pseudo HIGD1AP18 HIG1 hypoxia inducible domain family, member 1A pseudogene 18 O - 20121230 -9606 100874457 CASP1P1 - - HGNC:43775 11 - caspase 1, apoptosis-related cysteine peptidase pseudogene 1 pseudo CASP1P1 caspase 1, apoptosis-related cysteine peptidase pseudogene 1 O - 20121230 -9606 100874458 HMGN2P14 - - HGNC:23341 14 - high mobility group nucleosomal binding domain 2 pseudogene14 pseudo HMGN2P14 high mobility group nucleosomal binding domain 2 pseudogene14 O - 20121230 -9606 100874459 HMGN1P20 - - HGNC:39364 10 - high mobility group nucleosome binding domain 1 pseudogene 20 pseudo HMGN1P20 high mobility group nucleosome binding domain 1 pseudogene 20 O - 20121230 -9606 100874460 HMGN1P22 - - HGNC:39366 11 - high mobility group nucleosome binding domain 1 pseudogene 22 pseudo HMGN1P22 high mobility group nucleosome binding domain 1 pseudogene 22 O - 20121230 -9606 100874461 HMGN1P23 - - HGNC:39367 12 - high mobility group nucleosome binding domain 1 pseudogene 23 pseudo HMGN1P23 high mobility group nucleosome binding domain 1 pseudogene 23 O - 20121230 -9606 100874462 HMGN1P24 - - HGNC:39368 13 - high mobility group nucleosome binding domain 1 pseudogene 24 pseudo HMGN1P24 high mobility group nucleosome binding domain 1 pseudogene 24 O - 20121230 -9606 100874463 HMGN1P27 - - HGNC:39371 15 - high mobility group nucleosome binding domain 1 pseudogene 27 pseudo HMGN1P27 high mobility group nucleosome binding domain 1 pseudogene 27 O - 20121230 -9606 100874464 HMGN1P28 - - HGNC:39372 17 - high mobility group nucleosome binding domain 1 pseudogene 28 pseudo HMGN1P28 high mobility group nucleosome binding domain 1 pseudogene 28 O - 20121230 -9606 100874465 HMGN1P32 - - HGNC:39376 19 - high mobility group nucleosome binding domain 1 pseudogene 32 pseudo HMGN1P32 high mobility group nucleosome binding domain 1 pseudogene 32 O - 20121230 -9606 100874466 HMGN2P19 - - HGNC:39383 1 - high mobility group nucleosomal binding domain 2 pseudogene 19 pseudo HMGN2P19 high mobility group nucleosomal binding domain 2 pseudogene 19 O - 20121230 -9606 100874467 HMGN2P21 - - HGNC:39386 2 - high mobility group nucleosomal binding domain 2 pseudogene 21 pseudo HMGN2P21 high mobility group nucleosomal binding domain 2 pseudogene 21 O - 20121230 -9606 100874468 HMGN2P22 - - HGNC:39387 2 - high mobility group nucleosomal binding domain 2 pseudogene 22 pseudo HMGN2P22 high mobility group nucleosomal binding domain 2 pseudogene 22 O - 20121230 -9606 100874469 HMGN2P23 - - HGNC:39388 2 - high mobility group nucleosomal binding domain 2 pseudogene 23 pseudo HMGN2P23 high mobility group nucleosomal binding domain 2 pseudogene 23 O - 20121230 -9606 100874470 HMGN2P26 - - HGNC:39393 3 - high mobility group nucleosomal binding domain 2 pseudogene 26 pseudo HMGN2P26 high mobility group nucleosomal binding domain 2 pseudogene 26 O - 20121230 -9606 100874471 HMGN2P27 - - HGNC:39394 5 - high mobility group nucleosomal binding domain 2 pseudogene 27 pseudo HMGN2P27 high mobility group nucleosomal binding domain 2 pseudogene 27 O - 20121230 -9606 100874472 HMGN2P29 - - HGNC:39396 6 - high mobility group nucleosomal binding domain 2 pseudogene 29 pseudo HMGN2P29 high mobility group nucleosomal binding domain 2 pseudogene 29 O - 20121230 -9606 100874473 HMGN2P32 - - HGNC:39403 9 - high mobility group nucleosomal binding domain 2 pseudogene 32 pseudo HMGN2P32 high mobility group nucleosomal binding domain 2 pseudogene 32 O - 20121230 -9606 100874474 HMGN2P33 - - HGNC:39404 9 - high mobility group nucleosomal binding domain 2 pseudogene 33 pseudo HMGN2P33 high mobility group nucleosomal binding domain 2 pseudogene 33 O - 20121230 -9606 100874475 HMGN2P45 - - HGNC:39416 X - high mobility group nucleosomal binding domain 2 pseudogene 45 pseudo HMGN2P45 high mobility group nucleosomal binding domain 2 pseudogene 45 O - 20121230 -9606 100874476 HIGD1AP16 - - HGNC:43011 20 - HIG1 hypoxia inducible domain family, member 1A pseudogene 16 pseudo HIGD1AP16 HIG1 hypoxia inducible domain family, member 1A pseudogene 16 O - 20121230 -9606 100874477 HIGD1AP17 - - HGNC:43012 14 - HIG1 hypoxia inducible domain family, member 1A pseudogene 17 pseudo HIGD1AP17 HIG1 hypoxia inducible domain family, member 1A pseudogene 17 O - 20121230 -9606 100874478 HMGN2P34 - - HGNC:39405 10 - high mobility group nucleosomal binding domain 2 pseudogene 34 pseudo HMGN2P34 high mobility group nucleosomal binding domain 2 pseudogene 34 O - 20121230 -9606 100874479 HMGN2P35 - - HGNC:39406 10 - high mobility group nucleosomal binding domain 2 pseudogene 35 pseudo HMGN2P35 high mobility group nucleosomal binding domain 2 pseudogene 35 O - 20121230 -9606 100874480 HMGN2P36 - - HGNC:39407 11 - high mobility group nucleosomal binding domain 2 pseudogene 36 pseudo HMGN2P36 high mobility group nucleosomal binding domain 2 pseudogene 36 O - 20121230 -9606 100874481 HMGN2P37 - - HGNC:39408 11 - high mobility group nucleosomal binding domain 2 pseudogene 37 pseudo HMGN2P37 high mobility group nucleosomal binding domain 2 pseudogene 37 O - 20121230 -9606 100874482 HMGN2P38 - - HGNC:39409 11 - high mobility group nucleosomal binding domain 2 pseudogene 38 pseudo HMGN2P38 high mobility group nucleosomal binding domain 2 pseudogene 38 O - 20121230 -9606 100874483 HMGN2P39 - - HGNC:39410 13 - high mobility group nucleosomal binding domain 2 pseudogene 39 pseudo HMGN2P39 high mobility group nucleosomal binding domain 2 pseudogene 39 O - 20121230 -9606 100874484 HMGN2P40 - - HGNC:39411 15 - high mobility group nucleosomal binding domain 2 pseudogene 40 pseudo HMGN2P40 high mobility group nucleosomal binding domain 2 pseudogene 40 O - 20121230 -9606 100874485 HMGN2P42 - - HGNC:39413 17 - high mobility group nucleosomal binding domain 2 pseudogene 42 pseudo HMGN2P42 high mobility group nucleosomal binding domain 2 pseudogene 42 O - 20121230 -9606 100874486 HMGN2P43 - - HGNC:39414 17 - high mobility group nucleosomal binding domain 2 pseudogene 43 pseudo HMGN2P43 high mobility group nucleosomal binding domain 2 pseudogene 43 O - 20121230 -9606 100874487 HMGN2P44 - - HGNC:39415 18 - high mobility group nucleosomal binding domain 2 pseudogene 44 pseudo HMGN2P44 high mobility group nucleosomal binding domain 2 pseudogene 44 O - 20121230 -9606 100874488 NIPA2P5 - - HGNC:42045 13 - non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 5 pseudo NIPA2P5 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 5 O - 20121230 -9606 100874489 DDX3YP2 - - HGNC:42172 X - DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 2 pseudo DDX3YP2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 2 O - 20121230 -9606 100874490 EEF1A1P40 - - HGNC:37918 X - eukaryotic translation elongation factor 1 alpha 1 pseudogene 40 pseudo EEF1A1P40 eukaryotic translation elongation factor 1 alpha 1 pseudogene 40 O - 20121230 -9606 100874491 EEF1A1P41 - - HGNC:38799 Y - eukaryotic translation elongation factor 1 alpha 1 pseudogene 41 pseudo EEF1A1P41 eukaryotic translation elongation factor 1 alpha 1 pseudogene 41 O - 20121230 -9606 100874492 BRK1P2 - - HGNC:42021 13 - BRICK1, SCAR/WAVE actin-nucleating complex subunit pseudogene 2 pseudo BRK1P2 BRICK1, SCAR/WAVE actin-nucleating complex subunit pseudogene 2 O - 20121230 -9606 100874493 PIEZO1P2 - - HGNC:42861 20 - piezo-type mechanosensitive ion channel component 1 pseudogene 2 pseudo PIEZO1P2 piezo-type mechanosensitive ion channel component 1 pseudogene 2 O - 20121230 -9606 100874494 CYP46A4P - - HGNC:42349 1 - cytochrome P450, family 46, subfamily A, polypeptide 4, pseudogene pseudo CYP46A4P cytochrome P450, family 46, subfamily A, polypeptide 4, pseudogene O - 20121230 -9606 100874495 CYP4A43P - - HGNC:42417 1 - cytochrome P450, family 4, subfamily A, polypeptide 43, pseudogene pseudo CYP4A43P cytochrome P450, family 4, subfamily A, polypeptide 43, pseudogene O - 20120404 -9606 100874496 CYP3A51P - - HGNC:42418 7 - cytochrome P450, family 3, subfamily A, polypeptide 51, pseudogene pseudo CYP3A51P cytochrome P450, family 3, subfamily A, polypeptide 51, pseudogene O - 20120404 -9606 100874497 RBMY1KP - RBMY1K HGNC:38750 Y - RNA binding motif protein, Y-linked, family 1, member K, pseudogene pseudo RBMY1KP RNA binding motif protein, Y-linked, family 1, member K, pseudogene O - 20121209 -9606 100874498 SPTLC1P2 - - HGNC:39669 6 - serine palmitoyltransferase, long chain base subunit 1 pseudogene 2 pseudo SPTLC1P2 serine palmitoyltransferase, long chain base subunit 1 pseudogene 2 O - 20121230 -9606 100874499 SPTLC1P3 - - HGNC:39670 6 - serine palmitoyltransferase, long chain base subunit 1 pseudogene 3 pseudo SPTLC1P3 serine palmitoyltransferase, long chain base subunit 1 pseudogene 3 O - 20121230 -9606 100874500 SPTLC1P4 - - HGNC:39671 1 - serine palmitoyltransferase, long chain base subunit 1 pseudogene 4 pseudo SPTLC1P4 serine palmitoyltransferase, long chain base subunit 1 pseudogene 4 O - 20121230 -9606 100874501 NME1P1 - - HGNC:39904 13 - NME/NM23 nucleoside diphosphate kinase 1 pseudogene 1 pseudo NME1P1 NME/NM23 nucleoside diphosphate kinase 1 pseudogene 1 O - 20121230 -9606 100874502 ATP6V0E1P1 - - HGNC:41935 5 - ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 1 pseudo ATP6V0E1P1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 1 O - 20121230 -9606 100874503 ATP6V0E1P2 - - HGNC:41936 3 - ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 2 pseudo ATP6V0E1P2 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 2 O - 20121230 -9606 100874504 ATP6V0E1P4 - - HGNC:41938 1 - ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 4 pseudo ATP6V0E1P4 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 4 O - 20121230 -9606 100874505 CYP2C59P - - HGNC:42406 10 - cytochrome P450, family 2, subfamily C, polypeptide 59, pseudogene pseudo CYP2C59P cytochrome P450, family 2, subfamily C, polypeptide 59, pseudogene O - 20121230 -9606 100874506 CHCHD2P1 - - HGNC:39585 X - coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 1 pseudo CHCHD2P1 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 1 O - 20121230 -9606 100874507 CHCHD2P4 - - HGNC:39588 6 - coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 4 pseudo CHCHD2P4 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 4 O - 20121230 -9606 100874508 CHCHD2P5 - - HGNC:39589 1 - coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 5 pseudo CHCHD2P5 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 5 O - 20121230 -9606 100874509 CHCHD2P7 - - HGNC:39591 4 - coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 7 pseudo CHCHD2P7 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 7 O - 20121230 -9606 100874510 PSMA6P3 - - HGNC:39608 21 - proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 3 pseudo PSMA6P3 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 3 O - 20121230 -9606 100874511 SPTLC1P1 - - HGNC:39668 10 - serine palmitoyltransferase, long chain base subunit 1 pseudogene 1 pseudo SPTLC1P1 serine palmitoyltransferase, long chain base subunit 1 pseudogene 1 O - 20121230 -9606 100874512 SPTLC1P5 - - HGNC:39672 13 - serine palmitoyltransferase, long chain base subunit 1 pseudogene 5 pseudo SPTLC1P5 serine palmitoyltransferase, long chain base subunit 1 pseudogene 5 O - 20121230 -9606 100874513 CYP2C115P - CYP2C9-de1b HGNC:42405 10 - cytochrome P450, family 2, subfamily C, polypeptide 115, pseudogene pseudo CYP2C115P cytochrome P450, family 2, subfamily C, polypeptide 115, pseudogene O - 20121230 -9606 100874514 ATP6V1G1P7 - - HGNC:39852 13 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 7 pseudo ATP6V1G1P7 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 7 O - 20121230 -9606 100874515 POLR2KP1 - - HGNC:42650 12 - polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 1 pseudo POLR2KP1 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 1 O - 20121230 -9606 100874516 LAMTOR3P2 - - HGNC:39727 5 - late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2 pseudo LAMTOR3P2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2 O - 20121230 -9606 100874517 TOMM22P4 - - HGNC:38740 4 - translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 4 pseudo TOMM22P4 translocase of outer mitochondrial membrane 22 homolog (yeast) pseudogene 4 O - 20121230 -9606 100874518 ATP8A2P3 - - HGNC:42641 13 - ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 3 pseudo ATP8A2P3 ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 3 O - 20121230 -9606 100874519 TCEB2P4 - - HGNC:39722 10 - transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 4 pseudo TCEB2P4 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 4 O - 20121230 -9606 100874520 PCMTD1P1 - - HGNC:38804 Y - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 1 pseudo PCMTD1P1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 1 O - 20121230 -9606 100874521 ST13P22 - - HGNC:38865 12 - suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 22 pseudo ST13P22 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 22 O - 20121230 -9606 100874522 SLC25A15P2 - - HGNC:39843 13 - solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 2 pseudo SLC25A15P2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 2 O - 20121230 -9606 100874523 HIF1AP1 - - HGNC:43016 14 - hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) pseudogene 1 pseudo HIF1AP1 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) pseudogene 1 O - 20121230 -9606 100874524 ST6GALNAC4P1 - - HGNC:39660 13 - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1 pseudo ST6GALNAC4P1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1 O - 20121230 -9606 100874527 C16DELQ22 - DEL16q22 MIM:614541 16 16q22 Chromosome 16q22 deletion syndrome unknown - - - - 20120622 -9606 100874528 XXYLT1-AS1 - - HGNC:41153 3 3q29 XXYLT1 antisense RNA 1 miscRNA XXYLT1-AS1 XXYLT1 antisense RNA 1 O - 20121021 -9606 100874529 MPRIP-AS1 - - HGNC:41263 17 17p11.2 MPRIP antisense RNA 1 miscRNA MPRIP-AS1 MPRIP antisense RNA 1 O - 20121021 -9606 100874530 APOBEC3B-AS1 - - HGNC:43836 22 22q13.1 APOBEC3B antisense RNA 1 miscRNA APOBEC3B-AS1 APOBEC3B antisense RNA 1 O - 20121021 -9606 100874531 LINC00581 - - HGNC:43840 6 6p22.3 long intergenic non-protein coding RNA 581 miscRNA LINC00581 long intergenic non-protein coding RNA 581 O - 20120508 -9606 100874532 IBGC2 - - MIM:606656 2 2q37 Basal ganglia calcification, idiopathic, 2 unknown - - - - 20120622 -9606 100874533 DUPXQ27.3Q28 - CXDUPq27.3q28 MIM:300869 X Xq27.3-q28 Chromosome Xq27.3-q28 duplication syndrome unknown - - - - 20120622 -9606 100884129 DUP17Q12 - C17DUPq12 MIM:614526 17 17q12 Chromosome 17q12 duplication syndrome unknown - - - - 20120622 -9606 100884130 DEL17Q12 - C17DELq12 MIM:614527 17 17q12 Chromosome 17q12 deletion syndrome unknown - - - - 20120622 -9606 100884155 MTND2P9 - - HGNC:42110 9 9q21.31 MT-ND2 pseudogene 9 pseudo MTND2P9 MT-ND2 pseudogene 9 O - 20121230 -9606 100884169 LOC100884169 - - - 5 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 pseudogene pseudo - - - - 20121230 -9606 100885773 DYT21 - - HGNC:39436|MIM:614588 2 2q14.3-q21.3 dystonia 21, torsion (autosomal dominant) unknown DYT21 dystonia 21, torsion (autosomal dominant) O - 20120622 -9606 100885774 PDCOS - - MIM:614590 6 6p21.3 Podoconiosis, susceptibility to unknown - - - - 20120622 -9606 100885775 BANCR - LINC00586 HGNC:43877 9 - BRAF-activated non-protein coding RNA miscRNA BANCR BRAF-activated non-protein coding RNA O - 20121230 -9606 100885776 UGDH-AS1 - - HGNC:40601 4 4p UGDH antisense RNA 1 miscRNA UGDH-AS1 UGDH antisense RNA 1 O - 20121230 -9606 100885777 PCCA-AS1 - - HGNC:39901 13 13q32.3 PCCA antisense RNA 1 miscRNA PCCA-AS1 PCCA antisense RNA 1 O - 20121230 -9606 100885778 NALCN-AS1 - - HGNC:42743 13 13q33.1 NALCN antisense RNA 1 miscRNA NALCN-AS1 NALCN antisense RNA 1 O - 20121230 -9606 100885779 LINC-ROR - lincRNA-RoR HGNC:43773 18 18q21.31 long intergenic non-protein coding RNA, regulator of reprogramming miscRNA LINC-ROR long intergenic non-protein coding RNA, regulator of reprogramming O - 20121230 -9606 100885780 VWC2L-IT1 - - HGNC:41508 2 2q35 VWC2L intronic transcript 1 (non-protein coding) miscRNA VWC2L-IT1 VWC2L intronic transcript 1 (non-protein coding) O - 20121230 -9606 100885781 LINC00348 - - HGNC:42658 13 13q21.33 long intergenic non-protein coding RNA 348 miscRNA LINC00348 long intergenic non-protein coding RNA 348 O - 20121230 -9606 100885782 MYO16-AS1 - - HGNC:39913 13 13q33.3 MYO16 antisense RNA 1 miscRNA MYO16-AS1 MYO16 antisense RNA 1 O - 20121230 -9606 100885786 NMLFS - C8DELq22.1|DEL8q22.1 MIM:608156 8 8q22.1 Nablus mask-like facial syndrome unknown - - - - 20120622 -9606 100885787 DEL8Q12Q21 - C8DELq12q21 MIM:600257 8 8q12.2-q21.2 Bor-Duane hydrocephalus contiguous gene syndrome unknown - - - - 20120622 -9606 100885788 OTDD - C11DELq13|DEL11q13 MIM:166750 11 11q13 Otodental dysplasia chromsome deletion syndrome unknown - - - - 20120622 -9606 100885789 IFNG-AS1 - Tmevpg1 HGNC:43910 12 12q15 IFNG antisense RNA 1 miscRNA IFNG-AS1 IFNG antisense RNA 1 O - 20121104 -9606 100885795 LARS2-AS1 - - HGNC:40796 3 3p21.31 LARS2 antisense RNA 1 miscRNA LARS2-AS1 LARS2 antisense RNA 1 O - 20121230 -9606 100885796 SLC9A9-AS1 - - HGNC:40928 3 3q24 SLC9A9 antisense RNA 1 miscRNA SLC9A9-AS1 SLC9A9 antisense RNA 1 O - 20121230 -9606 100885797 BPY2DP - - HGNC:38794 Y Yp11.2 basic charge, Y-linked, 2D, pseudogene pseudo BPY2DP basic charge, Y-linked, 2D, pseudogene O - 20121230 -9606 100885798 LINC00210 - NCRNA00210 HGNC:37458 1 1q41 long intergenic non-protein coding RNA 210 miscRNA LINC00210 long intergenic non-protein coding RNA 210 O - 20121230 -9606 100885799 ENO1P4 - - HGNC:37945 2 2q33.1 enolase 1, (alpha) pseudogene 4 pseudo ENO1P4 enolase 1, (alpha) pseudogene 4 O - 20121230 -9606 100885800 SNAP47-AS1 - SNAP47-IT1 HGNC:41501 1 1q42.13 SNAP47 antisense RNA 1 miscRNA SNAP47-AS1 SNAP47 antisense RNA 1 O - 20121021 -9606 100885801 KTCN5 - - MIM:614622 5 5q14.1-q21.3 Keratoconus 5 unknown - - - - 20120622 -9606 100885802 KTCN6 - - MIM:614623 9 9q34 Keratoconus 6 unknown - - - - 20120622 -9606 100885803 KTCN8 - - MIM:614628 14 14q24.3 Keratoconus 8 unknown - - - - 20120622 -9606 100885848 PTGES3L - - HGNC:43943|Ensembl:ENSG00000108825|Ensembl:ENSG00000267060|Vega:OTTHUMG00000180905|Vega:OTTHUMG00000180906 17 17q prostaglandin E synthase 3 (cytosolic)-like protein-coding PTGES3L prostaglandin E synthase 3 (cytosolic)-like O prostaglandin E synthase 3-like|putative protein PTGES3L 20121230 -9606 100885850 PTGES3L-AARSD1 hCG_16967 - HGNC:43946|Ensembl:ENSG00000108825|Vega:OTTHUMG00000180905 17 17q PTGES3L-AARSD1 readthrough protein-coding PTGES3L-AARSD1 PTGES3L-AARSD1 readthrough O PTGES3L-AARSD1 protein 20121230 -9606 100885864 RNA5SP244 - RN5S244 HGNC:43144 7 7q32 RNA, 5S ribosomal pseudogene 244 rRNA RNA5SP244 RNA, 5S ribosomal pseudogene 244 O - 20121230 -9606 100885865 HMGN1P29 - - HGNC:39373 17 - high mobility group nucleosome binding domain 1 pseudogene 29 pseudo HMGN1P29 high mobility group nucleosome binding domain 1 pseudogene 29 O - 20121230 -9606 100885866 MRPS31P4 - - HGNC:42649 13 - mitochondrial ribosomal protein S31 pseudogene 4 pseudo MRPS31P4 mitochondrial ribosomal protein S31 pseudogene 4 O - 20121230 -9606 100886964 PTCSC3 - - HGNC:43959|MIM:614821 14 14q13.3 papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) miscRNA PTCSC3 papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) O - 20121230 -9606 100887067 LOC100887067 - - - 5 - keratin 8 pseudogene pseudo - - - - 20121230 -9606 100887068 LOC100887068 - - - 2 - keratin 8 pseudogene pseudo - - - - 20121230 -9606 100887069 LOC100887069 - - - 13 - PHD finger protein 2 pseudogene pseudo - - - - 20120518 -9606 100887070 LOC100887070 - - - 7 - zinc finger protein 729 pseudogene pseudo - - - - 20120518 -9606 100887071 LOC100887071 - - - 19 - zinc finger protein 845 pseudogene pseudo - - - - 20120518 -9606 100887072 LOC100887072 - - - 19 - zinc finger protein 470 pseudogene pseudo - - - - 20121230 -9606 100887073 LOC100887073 - - - Y - double homeobox 4 like 6 pseudogene pseudo - - - - 20121230 -9606 100887074 LOC100887074 - - - 16 - double homeobox 4 like 2 pseudogene pseudo - - - - 20121230 -9606 100887075 ARHGAP42P1 - - HGNC:43940 2 - Rho GTPase activating protein 42 pseudogene 1 pseudo ARHGAP42P1 Rho GTPase activating protein 42 pseudogene 1 O - 20121230 -9606 100887076 LOC100887076 - - - 18 - chromosome 9 open reading frame 172 pseudogene pseudo - - - - 20121230 -9606 100887077 LOC100887077 - - - 7 - endogenous retrovirus group 3, member 1 pseudogene pseudo - - - - 20121230 -9606 100887078 LOC100887078 - - - 1 - endogenous retrovirus group 3, member 1 pseudogene pseudo - - - - 20121230 -9606 100887079 LOC100887079 - - - 8 - ubiquitin specific peptidase 17-like family member 22 pseudogene pseudo - - - - 20121023 -9606 100887080 LOC100887080 - - - 16 - acyl-CoA synthetase medium-chain family member 4 pseudogene pseudo - - - - 20121230 -9606 100887081 LOC100887081 - - - 19 - leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 pseudogene pseudo - - - - 20120518 -9606 100887740 RNA5SP411 - RN5S411 HGNC:43311 16 16p11.1 RNA, 5S ribosomal pseudogene 411 rRNA RNA5SP411 RNA, 5S ribosomal pseudogene 411 O - 20121230 -9606 100887743 DELXQ21 - CXDELq21 MIM:303110 X Xq21 Choroideremia, deafness, and mental retardation unknown - - - - 20120622 -9606 100887744 RNU6-48 - - HGNC:34292 1 - RNA, U6 small nuclear 48 snRNA RNU6-48 RNA, U6 small nuclear 48 O - 20121230 -9606 100887745 MTND1P13 - - HGNC:42096 22 - MT-ND1 pseudogene 13 pseudo MTND1P13 MT-ND1 pseudogene 13 O - 20121230 -9606 100887746 UNC93B7 - - HGNC:44036 4 - unc-93 homolog B7 pseudogene (C. elegans) pseudo UNC93B7 unc-93 homolog B7 pseudogene (C. elegans) O - 20121230 -9606 100887747 EEF1A1P18 - - HGNC:37891 11 11q eukaryotic translation elongation factor 1 alpha 1 pseudogene 18 pseudo EEF1A1P18 eukaryotic translation elongation factor 1 alpha 1 pseudogene 18 O - 20121230 -9606 100887748 UNC93B8 - - HGNC:44037 4 - unc-93 homolog B8 pseudogene (C. elegans) pseudo UNC93B8 unc-93 homolog B8 pseudogene (C. elegans) O - 20121230 -9606 100887749 MTND1P23 - - HGNC:42092 1 - MT-ND1 pseudogene 23 pseudo MTND1P23 MT-ND1 pseudogene 23 O - 20121230 -9606 100887750 MRPS31P5 - MRPS31P3 HGNC:39253 13 13q mitochondrial ribosomal protein S31 pseudogene 5 pseudo MRPS31P5 mitochondrial ribosomal protein S31 pseudogene 5 O - 20121230 -9606 100887751 MPVQTL6 - - MIM:614646 7 7q22.3 Mean platelet volume QTL6 unknown - - - - 20120622 -9606 100887752 MPVQTL5 - - MIM:614645 6 6q23.3 Mean platelet volume QTL5 unknown - - - - 20120622 -9606 100887753 MPVQTL4 - - MIM:614644 6 6p21.3-p21.2 Mean platelet volume QTL4 unknown - - - - 20120622 -9606 100887754 LINC00359 - - HGNC:42679 13 13q long intergenic non-protein coding RNA 359 miscRNA LINC00359 long intergenic non-protein coding RNA 359 O - 20121230 -9606 100887755 LINC00651 - - HGNC:44307 20 20q13 long intergenic non-protein coding RNA 651 miscRNA LINC00651 long intergenic non-protein coding RNA 651 O - 20121230 -9606 100887822 KTCN7 - - MIM:614629 13 13q32 Keratoconus 7 unknown - - - - 20120622 -9606 100887823 DFNB86 - - HGNC:37289|MIM:614617 16 16p13.3 deafness, autosomal recessive 86 unknown DFNB86 deafness, autosomal recessive 86 O - 20120622 -9606 100887824 DDX11L11 - - - 17 17p13.3 DEAD/H box polypeptide 11 like 11 protein-coding - - - - 20121120 -9606 100909384 DUP16P11.2 - AUTS14B|C16DUPp11.2 MIM:614671 16 16p11.2 Chromosome 16p11.2 duplication syndrome unknown - - - - 20120622 -9606 100909385 STUT4 - - MIM:614668 16 16q12.1-q23.1 Stuttering, familial persistent, 4 unknown - - - - 20120622 -9606 100909386 STUT3 - - MIM:614655 3 3q13.2-q13.33 Stuttering, familial persistent, 3 unknown - - - - 20120622 -9606 100909387 CMH21 - - MIM:614676 7 7p12.1-q21 Cardiomyopathy, familial hypertrophic, 21 unknown - - - - 20120622 -9606 100913082 LOC100913082 - - - 14 14q13-q21 intraflagellar transport 20 homolog (Chlamydomonas) pseudogene pseudo - - - - 20121230 -9606 100913179 LOC100913179 - - - 4 4p15 SRA stem-loop interacting RNA binding protein pseudogene pseudo - - - - 20121230 -9606 100913182 LOC100913182 - - - 6 - MARCKS-like 1 pseudogene pseudo - - - - 20121230 -9606 100913183 LOC100913183 - - - 10 - MARCKS-like 1 pseudogene pseudo - - - - 20121230 -9606 100913186 BDLN1 - - MIM:300054 X Xq24-q28 body length, human homolog of mouse body length 1 unknown - - - - 20120704 -9606 100913187 APOBEC3A_B CTA-150C2.14-001 - HGNC:44196 22 22q13 GRCh37.p9 patch APOBEC3A and APOBEC3B deletion hybrid protein-coding APOBEC3A_B APOBEC3A and APOBEC3B deletion hybrid O probable DNA dC->dU-editing enzyme APOBEC-3A 20121222 -9606 100967223 LOC100967223 - - - 7 7q11 neuroepithelial cell transforming 1 pseudogene pseudo - - - - 20121230 -9606 100967224 LOC100967224 - - - 1 1q31 neuroepithelial cell transforming 1 pseudogene pseudo - - - - 20121230 -9606 100967225 ADAM12-OT1 - CAR10 HGNC:43841 10 10q26.2 ADAM12 overlapping transcript 1 (non-protein coding) miscRNA ADAM12-OT1 ADAM12 overlapping transcript 1 (non-protein coding) O - 20121120 -9606 100996242 LOC100996242 - - - 16 - uncharacterized LOC100996242 miscRNA - - - - 20121222 -9606 100996245 LOC100996245 - - - 9 - peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121209 -9606 100996246 LOC100996246 - - - 12 - uncharacterized LOC100996246 miscRNA - - - - 20121222 -9606 100996247 LOC100996247 - - - 16 - putative uncharacterized protein encoded by LINC00269-like pseudo - - - - 20121209 -9606 100996249 LOC100996249 - - - 7 - uncharacterized LOC100996249 miscRNA - - - - 20121222 -9606 100996250 LOC100996250 - - - 9 - uncharacterized LOC100996250 protein-coding - - - - 20121222 -9606 100996251 LOC100996251 - - - 1 - uncharacterized LOC100996251 miscRNA - - - - 20121230 -9606 100996253 LOC100996253 - - - 2 - uncharacterized LOC100996253 protein-coding - - - - 20121222 -9606 100996254 LOC100996254 - - - 12 - uncharacterized LOC100996254 protein-coding - - - - 20121222 -9606 100996255 LOC100996255 - - - 15 - uncharacterized LOC100996255 miscRNA - - - - 20121230 -9606 100996256 LOC100996256 - - - 7 - uncharacterized LOC100996256 protein-coding - - - - 20121222 -9606 100996258 LOC100996258 - - - 9 - uncharacterized LOC100996258 pseudo - - - - 20121209 -9606 100996259 LOC100996259 - - - 17 - protein FAM106B-like protein-coding - - - - 20121222 -9606 100996260 LOC100996260 - - - 2 - uncharacterized LOC100996260 pseudo - - - - 20121209 -9606 100996261 LOC100996261 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996262 LOC100996262 - - - 4 - uncharacterized LOC100996262 pseudo - - - - 20121209 -9606 100996263 LOC100996263 - - - 1 - uncharacterized LOC100996263 miscRNA - - - - 20121222 -9606 100996264 LOC100996264 - - - 17 - prothymosin alpha-like pseudo - - - - 20121209 -9606 100996265 LOC100996265 - - - 1 - putative uncharacterized protein FLJ35883-like pseudo - - - - 20121209 -9606 100996266 LOC100996266 - - - 7 - uncharacterized LOC100996266 miscRNA - - - - 20121222 -9606 100996267 LOC100996267 - - - 13 - uncharacterized LOC100996267 miscRNA - - - - 20121222 -9606 100996268 LOC100996268 - - - 16 - uncharacterized LOC100996268 miscRNA - - - - 20121222 -9606 100996269 LOC100996269 - - - 7 - uncharacterized LOC100996269 miscRNA - - - - 20121222 -9606 100996270 LOC100996270 - - - 15 - polyadenylate-binding protein 4-like pseudo - - - - 20121209 -9606 100996271 LOC100996271 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996273 LOC100996273 - - - 17 - uncharacterized LOC100996273 protein-coding - - - - 20121222 -9606 100996274 LOC100996274 - - - 18 - uncharacterized LOC100996274 protein-coding - - - - 20121222 -9606 100996275 LOC100996275 - - - 2 - peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121102 -9606 100996276 LOC100996276 - - - 13 - uncharacterized LOC100996276 protein-coding - - - - 20121222 -9606 100996277 LOC100996277 - - - 16 - uncharacterized LOC100996277 miscRNA - - - - 20121222 -9606 100996278 LOC100996278 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996279 LOC100996279 - - - X - putative uncharacterized protein encoded by LINC00269-like protein-coding - - - - 20121222 -9606 100996280 LOC100996280 - - - 14 - uncharacterized LOC100996280 miscRNA - - - - 20121230 -9606 100996281 LOC100996281 - - - 1 - histone H3.2-like pseudo - - - - 20121209 -9606 100996282 LOC100996282 - - - 17 - uncharacterized LOC100996282 protein-coding - - - - 20121222 -9606 100996283 LOC100996283 - - - Un - uncharacterized LOC100996283 protein-coding - - - - 20121222 -9606 100996284 LOC100996284 - - - 1 - Fc receptor-like protein 2-like pseudo - - - - 20121209 -9606 100996285 LOC100996285 - - - 6 - ADP-ribosylation factor-like protein 4A-like pseudo - - - - 20121209 -9606 100996286 LOC100996286 - - - 4 - uncharacterized LOC100996286 miscRNA - - - - 20121222 -9606 100996287 LOC100996287 - - - 9 - uncharacterized LOC100996287 protein-coding - - - - 20121222 -9606 100996288 LOC100996288 - - - 19 - uncharacterized LOC100996288 miscRNA - - - - 20121222 -9606 100996289 LOC100996289 - - Ensembl:ENSG00000214189 19 - uncharacterized LOC100996289 protein-coding - - - - 20121222 -9606 100996290 LOC100996290 - - - 6 - uncharacterized LOC100996290 protein-coding - - - - 20121230 -9606 100996291 LOC100996291 - - - 17 17q25.3 uncharacterized LOC100996291 miscRNA - - - - 20121230 -9606 100996292 LOC100996292 - - - 1 - hydrocephalus-inducing protein homolog pseudo - - - - 20121222 -9606 100996293 LOC100996293 - - - 6 - uncharacterized LOC100996293 pseudo - - - - 20121209 -9606 100996294 LOC100996294 - - - 17 - uncharacterized LOC100996294 pseudo - - - - 20121209 -9606 100996295 LOC100996295 - - - 17 - uncharacterized LOC100996295 protein-coding - - - - 20121222 -9606 100996296 LOC100996296 - - - Un - XK-related protein 3-like pseudo - - - - 20121209 -9606 100996297 LOC100996297 - - - 5 - uncharacterized LOC100996297 pseudo - - - - 20121209 -9606 100996298 LOC100996298 - - - 7 - uncharacterized LOC100996298 miscRNA - - - - 20121222 -9606 100996299 LOC100996299 - - - 15 - uncharacterized LOC100996299 miscRNA - - - - 20121230 -9606 100996300 LOC100996300 - - - 6 - zinc finger protein ENSP00000375192-like protein-coding - - - - 20121222 -9606 100996301 LOC100996301 - - - 1 - uncharacterized LOC100996301 protein-coding - - - - 20121222 -9606 100996302 LOC100996302 - - - Un - uncharacterized LOC100996302 miscRNA - - - - 20121222 -9606 100996303 LOC100996303 - - - 5 - uncharacterized LOC100996303 pseudo - - - - 20121209 -9606 100996304 LOC100996304 - - - 8 - uncharacterized LOC100996304 protein-coding - - - - 20121222 -9606 100996305 LOC100996305 - - - 4 - uncharacterized LOC100996305 miscRNA - - - - 20121222 -9606 100996306 LOC100996306 - - - 9 - tubulin beta-8 chain-like pseudo - - - - 20121209 -9606 100996307 LOC100996307 - - - 19 - uncharacterized LOC100996307 miscRNA - - - - 20121230 -9606 100996309 LOC100996309 - - - 16 - uncharacterized LOC100996309 pseudo - - - - 20121209 -9606 100996310 LOC100996310 - - - 3 - uncharacterized LOC100996310 miscRNA - - - - 20121222 -9606 100996312 LOC100996312 - - - 9 - uncharacterized LOC100996312 protein-coding - - - - 20121222 -9606 100996314 LOC100996314 - - - 19 - putative uncharacterized protein FLJ26174-like protein-coding - - - - 20121222 -9606 100996315 CHIAP3 - - HGNC:44464 1 - chitinase, acidic pseudogene 3 pseudo CHIAP3 chitinase, acidic pseudogene 3 O - 20121102 -9606 100996316 LOC100996316 - - - Un - ankyrin repeat domain-containing protein 20A4-like pseudo - - - - 20121209 -9606 100996317 LOC100996317 - - - 12 - uncharacterized LOC100996317 protein-coding - - - - 20121222 -9606 100996318 LOC100996318 - - - 1 - uncharacterized LOC100996318 protein-coding - - - - 20121222 -9606 100996319 LOC100996319 - - - 5 - uncharacterized LOC100996319 miscRNA - - - - 20121222 -9606 100996321 LOC100996321 - - - 3 - uncharacterized LOC100996321 miscRNA - - - - 20121222 -9606 100996323 LOC100996323 - - - 6 - histone demethylase UTY-like pseudo - - - - 20121209 -9606 100996324 LOC100996324 - - - 18 - uncharacterized LOC100996324 miscRNA - - - - 20121222 -9606 100996325 LOC100996325 - - - 5 - uncharacterized LOC100996325 protein-coding - - - - 20121230 -9606 100996326 LOC100996326 - - - 6 - putative POM121-like protein 1-like pseudo - - - - 20121209 -9606 100996327 LOC100996327 - - - 18 - uncharacterized LOC100996327 pseudo - - - - 20121209 -9606 100996328 LOC100996328 - - - 19 - uncharacterized LOC100996328 miscRNA - - - - 20121222 -9606 100996329 LOC100996329 - - - 16 - putative uncharacterized protein FLJ42384-like protein-coding - - - - 20121222 -9606 100996331 LOC100996331 - - Ensembl:ENSG00000233917|Vega:OTTHUMG00000171734 15 - POTE ankyrin domain family member B-like protein-coding - - - - 20121230 -9606 100996332 LOC100996332 - - - 16 - uncharacterized LOC100996332 miscRNA - - - - 20121230 -9606 100996333 LOC100996333 - - - 18 - G protein-coupled receptor 125 pseudogene pseudo - - - - 20121230 -9606 100996335 LOC100996335 - - - 22 - uncharacterized LOC100996335 pseudo - - - - 20121222 -9606 100996337 LOC100996337 - - - 22 - transmembrane protein 191B-like protein-coding - - - - 20121222 -9606 100996338 LOC100996338 - - - 16 - uncharacterized LOC100996338 miscRNA - - - - 20121222 -9606 100996339 LOC100996339 - - - 14 - uncharacterized LOC100996339 miscRNA - - - - 20121222 -9606 100996341 LOC100996341 - - - 7 - putative uncharacterized protein FLJ11871-like protein-coding - - - - 20121222 -9606 100996342 LOC100996342 - - - 22 - uncharacterized LOC100996342 miscRNA - - - - 20121230 -9606 100996344 LOC100996344 - - - 16 - uncharacterized LOC100996344 miscRNA - - - - 20121222 -9606 100996345 LOC100996345 - - - 16 - uncharacterized LOC100996345 miscRNA - - - - 20121222 -9606 100996346 LOC100996346 - - - 10 - uncharacterized LOC100996346 protein-coding - - - - 20121222 -9606 100996347 LOC100996347 - - - 13 - uncharacterized LOC100996347 miscRNA - - - - 20121222 -9606 100996348 LOC100996348 - - - 8 - uncharacterized LOC100996348 miscRNA - - - - 20121222 -9606 100996349 LOC100996349 - - - 19 - testis-expressed sequence 264 protein-like pseudo - - - - 20121222 -9606 100996350 LOC100996350 - - - 3 - double homeobox protein 4-like protein 4-like protein-coding - - - - 20121222 -9606 100996351 LOC100996351 - - - 19 - uncharacterized LOC100996351 pseudo - - - - 20121209 -9606 100996352 LOC100996352 - - - 8 - uncharacterized LOC100996352 pseudo - - - - 20121209 -9606 100996353 LOC100996353 - - - 16 - uncharacterized LOC100996353 miscRNA - - - - 20121222 -9606 100996354 LOC100996354 - - - 17 - uncharacterized LOC100996354 pseudo - - - - 20121209 -9606 100996355 LOC100996355 - - - 7 - uncharacterized LOC100996355 miscRNA - - - - 20121222 -9606 100996356 LOC100996356 - - - 12 - uncharacterized LOC100996356 protein-coding - - - - 20121222 -9606 100996357 LOC100996357 - - - 6 - uncharacterized LOC100996357 miscRNA - - - - 20121222 -9606 100996360 LOC100996360 - - - 8 - uncharacterized LOC100996360 pseudo - - - - 20121209 -9606 100996361 LOC100996361 - - - 17 - ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene pseudo - - - - 20121230 -9606 100996362 LOC100996362 - - - 7 - C-terminal-binding protein 2-like pseudo - - - - 20121209 -9606 100996363 LOC100996363 - - - 4 - uncharacterized LOC100996363 miscRNA - - - - 20121222 -9606 100996364 LOC100996364 - - - Un - 40S ribosomal protein SA-like pseudo - - - - 20121209 -9606 100996365 LOC100996365 - - - 7 - uncharacterized LOC100996365 pseudo - - - - 20121222 -9606 100996366 LOC100996366 - - - 16 - uncharacterized LOC100996366 miscRNA - - - - 20121222 -9606 100996367 LOC100996367 - - - 19 - uncharacterized LOC100996367 pseudo - - - - 20121209 -9606 100996368 LOC100996368 - - - 17 - uncharacterized LOC100996368 protein-coding - - - - 20121222 -9606 100996369 LOC100996369 - - - 22 - cadherin EGF LAG seven-pass G-type receptor 1-like protein-coding - - - - 20121222 -9606 100996371 LOC100996371 - - - 3 - uncharacterized LOC100996371 miscRNA - - - - 20121222 -9606 100996372 LOC100996372 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996374 LOC100996374 - - - 17 - uncharacterized LOC100996374 pseudo - - - - 20121222 -9606 100996375 LOC100996375 - - - Un - angiogenic factor with G patch and FHA domains 1-like pseudo - - - - 20121209 -9606 100996377 LOC100996377 - - - 7 - septin-14-like pseudo - - - - 20121209 -9606 100996378 LOC100996378 - - - 12 - uncharacterized LOC100996378 protein-coding - - - - 20121222 -9606 100996379 LOC100996379 - - - 15 - uncharacterized LOC100996379 pseudo - - - - 20121209 -9606 100996380 LOC100996380 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996381 LOC100996381 - - - 19 - uncharacterized LOC100996381 miscRNA - - - - 20121230 -9606 100996382 LOC100996382 - - - 18 - uncharacterized LOC100996382 protein-coding - - - - 20121222 -9606 100996383 LOC100996383 - - - 8 - uncharacterized LOC100996383 protein-coding - - - - 20121222 -9606 100996384 LOC100996384 - - - 5 - aconitate hydratase, mitochondrial-like pseudo - - - - 20121209 -9606 100996385 LOC100996385 - - - 5 - uncharacterized LOC100996385 miscRNA - - - - 20121230 -9606 100996387 LOC100996387 - - - 7 - uncharacterized LOC100996387 pseudo - - - - 20121209 -9606 100996388 LOC100996388 - - - 7 - uncharacterized LOC100996388 miscRNA - - - - 20121222 -9606 100996390 LOC100996390 - - - 9 - protein FAM163B-like protein-coding - - - - 20121222 -9606 100996391 LOC100996391 - - - 5 - uncharacterized LOC100996391 pseudo - - - - 20121209 -9606 100996392 LOC100996392 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996394 LOC100996394 - - - 2 - uncharacterized LOC100996394 protein-coding - - - - 20121222 -9606 100996395 LOC100996395 - - - 13 - uncharacterized LOC100996395 miscRNA - - - - 20121222 -9606 100996396 LOC100996396 - - - 9 - ADAMTS-like protein 2-like protein-coding - - - - 20121222 -9606 100996398 LOC100996398 - - - 8 - uncharacterized LOC100996398 miscRNA - - - - 20121222 -9606 100996400 LOC100996400 - - - 18 - uncharacterized LOC100996400 miscRNA - - - - 20121222 -9606 100996401 LOC100996401 - - - 22 - transmembrane protein 191B-like protein-coding - - - - 20121222 -9606 100996402 LOC100996402 - - - 7 - uncharacterized LOC100996402 miscRNA - - - - 20121120 -9606 100996403 LOC100996403 - - - 19 - leukotriene-B(4) omega-hydroxylase 1-like pseudo - - - - 20121209 -9606 100996404 LOC100996404 - - - 22 - uncharacterized LOC100996404 miscRNA - - - - 20121222 -9606 100996405 LOC100996405 - - - 19 - uncharacterized LOC100996405 protein-coding - - - - 20121222 -9606 100996406 LOC100996406 - - - 5 - uncharacterized LOC100996406 pseudo - - - - 20121209 -9606 100996407 LOC100996407 - - - 7 - uncharacterized LOC100996407 protein-coding - - - - 20121222 -9606 100996408 LOC100996408 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996409 LOC100996409 - - - 14 - uncharacterized LOC100996409 pseudo - - - - 20121209 -9606 100996410 LOC100996410 - - - 22 - uncharacterized LOC100996410 pseudo - - - - 20121209 -9606 100996411 LOC100996411 - - - 7 - uncharacterized LOC100996411 miscRNA - - - - 20121222 -9606 100996412 LOC100996412 - - - 13 - uncharacterized LOC100996412 protein-coding - - - - 20121222 -9606 100996413 LOC100996413 - - - 15 - uncharacterized LOC100996413 protein-coding - - - - 20121222 -9606 100996414 LOC100996414 - - - 7 - uncharacterized LOC100996414 pseudo - - - - 20121209 -9606 100996415 LOC100996415 - - - 22 - uncharacterized LOC100996415 pseudo - - - - 20121209 -9606 100996416 LOC100996416 - - - 13 - uncharacterized LOC100996416 miscRNA - - - - 20121222 -9606 100996417 LOC100996417 - - - 19 - uncharacterized LOC100996417 miscRNA - - - - 20121222 -9606 100996418 LOC100996418 - - - Un - ankyrin repeat domain-containing protein 20A2-like pseudo - - - - 20121209 -9606 100996419 LOC100996419 - - - 5 - uncharacterized LOC100996419 miscRNA - - - - 20121222 -9606 100996420 LOC100996420 - - - 15 - dynamin-1-like pseudo - - - - 20121209 -9606 100996421 LOC100996421 - - - 5 - uncharacterized LOC100996421 miscRNA - - - - 20121222 -9606 100996422 LOC100996422 - - - 7 - uncharacterized LOC100996422 miscRNA - - - - 20121222 -9606 100996423 LOC100996423 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996424 LOC100996424 - - - 5 - uncharacterized LOC100996424 miscRNA - - - - 20121222 -9606 100996425 LOC100996425 - - - 16 - uncharacterized LOC100996425 miscRNA - - - - 20121222 -9606 100996426 LOC100996426 - - - 7 - putative uncharacterized protein encoded by LINC00269-like protein-coding - - - - 20121222 -9606 100996427 LOC100996427 - - - 1 - coiled-coil domain-containing protein 29-like pseudo - - - - 20121209 -9606 100996428 LOC100996428 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 100996430 LOC100996430 - - - 16 - uncharacterized LOC100996430 miscRNA - - - - 20121222 -9606 100996431 LOC100996431 - - - Un - uncharacterized LOC100996431 miscRNA - - - - 20121222 -9606 100996432 LOC100996432 - - Ensembl:ENSG00000236954 22 - paternally-expressed gene 3 protein-like protein-coding - - - - 20121222 -9606 100996433 LOC100996433 - - - 7 - uncharacterized LOC100996433 protein-coding - - - - 20121222 -9606 100996434 LOC100996434 - - - 7 - uncharacterized LOC100996434 pseudo - - - - 20121209 -9606 100996435 CA15P1 - - HGNC:44364 22 - carbonic anhydrase XV, pseudogene 1 pseudo CA15P1 carbonic anhydrase XV, pseudogene 1 O - 20121102 -9606 100996436 LOC100996436 - - - 7 - uncharacterized LOC100996436 pseudo - - - - 20121209 -9606 100996437 LOC100996437 - - - 7 - uncharacterized LOC100996437 miscRNA - - - - 20121222 -9606 100996438 LOC100996438 - - - 14 - mediator of RNA polymerase II transcription subunit 15-like pseudo - - - - 20121209 -9606 100996439 GOLGA8N - - HGNC:44405 15 - golgin A8 family, member N protein-coding GOLGA8N golgin A8 family, member N O golgin subfamily A member 8-like protein 2-like 20121104 -9606 100996440 LOC100996440 - - - 19 - uncharacterized LOC100996440 protein-coding - - - - 20121222 -9606 100996442 LOC100996442 - - - 1 - uncharacterized LOC100996442 miscRNA - - - - 20121222 -9606 100996444 LOC100996444 - - - 5 - uncharacterized LOC100996444 miscRNA - - - - 20121222 -9606 100996445 LOC100996445 - - - 7 - uncharacterized LOC100996445 protein-coding - - - - 20121222 -9606 100996446 LOC100996446 - - - 5 - uncharacterized LOC100996446 miscRNA - - - - 20121222 -9606 100996447 LOC100996447 - - - 3 - uncharacterized LOC100996447 miscRNA - - - - 20121230 -9606 100996448 LOC100996448 - - - 2 - uncharacterized LOC100996448 miscRNA - - - - 20121222 -9606 100996451 LOC100996451 - - - 7 - uncharacterized LOC100996451 protein-coding - - - - 20121222 -9606 100996452 LOC100996452 - - - 5 - uncharacterized LOC100996452 pseudo - - - - 20121222 -9606 100996453 LOC100996453 - - - 11 - uncharacterized LOC100996453 miscRNA - - - - 20121222 -9606 100996455 LOC100996455 - - - 11 11q13.1 uncharacterized LOC100996455 miscRNA - - - - 20121230 -9606 100996456 LOC100996456 - - - 3 - uncharacterized LOC100996456 miscRNA - - - - 20121222 -9606 100996457 LOC100996457 - - - 8 - uncharacterized LOC100996457 miscRNA - - - - 20121222 -9606 100996459 LOC100996459 - - - 7 - uncharacterized LOC100996459 protein-coding - - - - 20121222 -9606 100996460 LOC100996460 - - - 22 - uncharacterized LOC100996460 miscRNA - - - - 20121222 -9606 100996461 LOC100996461 - - - 2 - uncharacterized LOC100996461 protein-coding - - - - 20121102 -9606 100996462 LOC100996462 - - - 8 - uncharacterized LOC100996462 miscRNA - - - - 20121222 -9606 100996463 LOC100996463 - - - 1 - uncharacterized LOC100996463 pseudo - - - - 20121209 -9606 100996464 LOC100996464 - - - Un - zinc finger protein 84-like protein-coding - - - - 20121222 -9606 100996465 LOC100996465 - - Ensembl:ENSG00000196987|Vega:OTTHUMG00000058499 X - putative lung carcinoma-associated protein 10-like protein-coding - - - - 20121222 -9606 100996466 LOC100996466 - - - 22 - mediator of RNA polymerase II transcription subunit 15-like pseudo - - - - 20121209 -9606 100996467 LOC100996467 - - - 11 - metastasis-associated lung adenocarcinoma transcript 1-like protein-coding - - - - 20121222 -9606 100996469 LOC100996469 - - - 19 - uncharacterized LOC100996469 pseudo - - - - 20121209 -9606 100996470 LOC100996470 - - - 13 - uncharacterized LOC100996470 protein-coding - - - - 20121222 -9606 100996471 LOC100996471 - - - 1 - uncharacterized LOC100996471 pseudo - - - - 20121209 -9606 100996472 LOC100996472 - - - 12 - uncharacterized LOC100996472 miscRNA - - - - 20121222 -9606 100996473 LOC100996473 - - - 1 - uncharacterized LOC100996473 protein-coding - - - - 20121222 -9606 100996474 LOC100996474 - - - 8 - uncharacterized LOC100996474 miscRNA - - - - 20121222 -9606 100996476 LOC100996476 - - - 7 - uncharacterized LOC100996476 pseudo - - - - 20121209 -9606 100996477 LOC100996477 - - - 12 - uncharacterized LOC100996477 miscRNA - - - - 20121222 -9606 100996478 LOC100996478 - - - 2 - uncharacterized LOC100996478 miscRNA - - - - 20121222 -9606 100996479 LOC100996479 - - - 16 - uncharacterized LOC100996479 pseudo - - - - 20121209 -9606 100996480 LOC100996480 - - - 9 - uncharacterized LOC100996480 pseudo - - - - 20121209 -9606 100996481 LOC100996481 - - - 6 - DNA primase large subunit-like pseudo - - - - 20121222 -9606 100996482 LOC100996482 - - - 9 - putative uncharacterized protein encoded by LINC00269-like protein-coding - - - - 20121222 -9606 100996483 LOC100996483 - - - 16 - uncharacterized LOC100996483 pseudo - - - - 20121209 -9606 100996484 LOC100996484 - - - 16 - uncharacterized LOC100996484 pseudo - - - - 20121209 -9606 100996485 LOC100996485 - - Ensembl:ENSG00000224186|Vega:OTTHUMG00000163106 5 - uncharacterized LOC100996485 protein-coding - - - - 20121222 -9606 100996486 LOC100996486 - - - 1 - uncharacterized LOC100996486 miscRNA - - - - 20121222 -9606 100996487 LOC100996487 - - - 9 - putative uncharacterized protein C9orf63-like protein-coding - - - - 20121222 -9606 100996488 FKSG48 - - - 1 - FKSG48 protein-coding - - - - 20121102 -9606 100996489 LOC100996489 - - - 9 - uncharacterized LOC100996489 protein-coding - - - - 20121222 -9606 100996490 LOC100996490 - - - 3 - uncharacterized LOC100996490 miscRNA - - - - 20121230 -9606 100996491 LOC100996491 - - - 7 - uncharacterized LOC100996491 pseudo - - - - 20121209 -9606 100996492 LOC100996492 - - - 15 - uncharacterized LOC100996492 protein-coding - - - - 20121222 -9606 100996494 LOC100996494 - - - 3 - uncharacterized LOC100996494 miscRNA - - - - 20121222 -9606 100996496 LOC100996496 - - - 1 - uncharacterized LOC100996496 miscRNA - - - - 20121222 -9606 100996497 LOC100996497 - - - 6 - uncharacterized LOC100996497 miscRNA - - - - 20121222 -9606 100996499 LOC100996499 - - - 16 - uncharacterized LOC100996499 protein-coding - - - - 20121222 -9606 100996500 LOC100996500 - - - 2 - decaprenyl-diphosphate synthase subunit 1-like pseudo - - - - 20121209 -9606 100996501 LOC100996501 - - - 12 - putative heterogeneous nuclear ribonucleoprotein A1-like 3-like pseudo - - - - 20121209 -9606 100996502 LOC100996502 - - - 1 - uncharacterized LOC100996502 pseudo - - - - 20121222 -9606 100996503 LOC100996503 - - - 16 - peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121209 -9606 100996504 LOC100996504 - - Ensembl:ENSG00000263264|Vega:OTTHUMG00000177340 19 - uncharacterized LOC100996504 protein-coding - - - - 20121222 -9606 100996505 LOC100996505 - - - 11 - uncharacterized LOC100996505 protein-coding - - - - 20121222 -9606 100996506 LOC100996506 - - - 2 - all-trans-retinol 13,14-reductase-like pseudo - - - - 20121222 -9606 100996507 LOC100996507 - - - 6 - uncharacterized LOC100996507 pseudo - - - - 20121209 -9606 100996508 LOC100996508 - - - 9 - uncharacterized LOC100996508 miscRNA - - - - 20121222 -9606 100996509 LOC100996509 - - - 19 - ubiquitin-40S ribosomal protein S27a-like pseudo - - - - 20121209 -9606 100996510 LOC100996510 - - - 1 - uncharacterized LOC100996510 pseudo - - - - 20121209 -9606 100996511 LOC100996511 - - - 1 - uncharacterized LOC100996511 miscRNA - - - - 20121222 -9606 100996512 LOC100996512 - - - 2 - uncharacterized LOC100996512 pseudo - - - - 20121209 -9606 100996513 LOC100996513 - - - 6 - uncharacterized LOC100996513 pseudo - - - - 20121209 -9606 100996514 LOC100996514 - - - X - uncharacterized LOC100996514 pseudo - - - - 20121209 -9606 100996515 LOC100996515 - - - 11 - uncharacterized LOC100996515 protein-coding - - - - 20121222 -9606 100996516 LOC100996516 - - - 1 - uncharacterized LOC100996516 protein-coding - - - - 20121230 -9606 100996517 LOC100996517 - - - 1 - vesicle-trafficking protein SEC22b-like pseudo - - - - 20121222 -9606 100996518 LOC100996518 - - - 20 - putative uncharacterized protein PRO0628-like protein-coding - - - - 20121222 -9606 100996519 LOC100996519 - - - 8 - transmembrane protein C8orf5-like protein-coding - - - - 20121222 -9606 100996520 LOC100996520 - - - 21 - 40S ribosomal protein SA-like pseudo - - - - 20121209 -9606 100996521 LOC100996521 - - - 1 - uncharacterized LOC100996521 miscRNA - - - - 20121222 -9606 100996522 LOC100996522 - - - 1 - uncharacterized LOC100996522 miscRNA - - - - 20121222 -9606 100996524 LOC100996524 - - - 22 - uncharacterized LOC100996524 miscRNA - - - - 20121222 -9606 100996525 LOC100996525 - - - X - uncharacterized LOC100996525 protein-coding - - - - 20121222 -9606 100996526 LOC100996526 - - - 17 - uncharacterized LOC100996526 miscRNA - - - - 20121222 -9606 100996527 LOC100996527 - - - 7 - uncharacterized LOC100996527 protein-coding - - - - 20121222 -9606 100996528 LOC100996528 - - - 16 - uncharacterized LOC100996528 protein-coding - - - - 20121222 -9606 100996529 LOC100996529 - - - 1 - uncharacterized LOC100996529 miscRNA - - - - 20121222 -9606 100996532 LOC100996532 - - - 2 - uncharacterized LOC100996532 pseudo - - - - 20121209 -9606 100996535 LOC100996535 - - - 2 - uncharacterized LOC100996535 protein-coding - - - - 20121222 -9606 100996536 LOC100996536 - - - 6 - uncharacterized LOC100996536 pseudo - - - - 20121209 -9606 100996537 LOC100996537 - - - 2 - uncharacterized LOC100996537 miscRNA - - - - 20121222 -9606 100996538 LOC100996538 - - - 22 - coiled-coil domain-containing protein 74A-like pseudo - - - - 20121209 -9606 100996539 ITPR1-AS1 - - HGNC:44470 3 - ITPR1 antisense RNA 1 (head to head) miscRNA ITPR1-AS1 ITPR1 antisense RNA 1 (head to head) O - 20121222 -9606 100996540 LOC100996540 - - - 2 - uncharacterized LOC100996540 pseudo - - - - 20121209 -9606 100996541 LOC100996541 - - - 16 - putative protein FAM157C-like protein-coding - - - - 20121222 -9606 100996542 LOC100996542 - - - 3 - uncharacterized LOC100996542 miscRNA - - - - 20121222 -9606 100996546 LOC100996546 - - - 3 - putative uncharacterized protein FLJ46541-like protein-coding - - - - 20121222 -9606 100996547 LOC100996547 - - - 9 - uncharacterized LOC100996547 protein-coding - - - - 20121222 -9606 100996548 LOC100996548 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121209 -9606 100996549 LOC100996549 - - - 2 - uncharacterized LOC100996549 miscRNA - - - - 20121222 -9606 100996550 LOC100996550 - - - 15 - putative colon cancer-associated antigen SK1-like pseudo - - - - 20121209 -9606 100996551 LOC100996551 - - - 2 - uncharacterized LOC100996551 miscRNA - - - - 20121222 -9606 100996552 LOC100996552 - - - 6 - uncharacterized LOC100996552 miscRNA - - - - 20121222 -9606 100996554 LOC100996554 - - - 16 - uncharacterized LOC100996554 miscRNA - - - - 20121222 -9606 100996555 LOC100996555 - - - 1 - uncharacterized LOC100996555 miscRNA - - - - 20121222 -9606 100996556 CA15P3 - - HGNC:44363 22 22q11.21 carbonic anhydrase XV, pseudogene 3 protein-coding CA15P3 carbonic anhydrase XV, pseudogene 3 O carbonic anhydrase 15-like 20121222 -9606 100996557 LOC100996557 - - - 9 - uncharacterized LOC100996557 miscRNA - - - - 20121222 -9606 100996558 LOC100996558 - - - Y - uncharacterized LOC100996558 pseudo - - - - 20121209 -9606 100996560 LOC100996560 - - - 22 - uncharacterized LOC100996560 pseudo - - - - 20121209 -9606 100996561 LOC100996561 - - - Y - uncharacterized LOC100996561 pseudo - - - - 20121209 -9606 100996562 LOC100996562 - - - 8 - transcription factor SOX-2-like pseudo - - - - 20121209 -9606 100996563 LOC100996563 - - - 17 - uncharacterized LOC100996563 miscRNA - - - - 20121222 -9606 100996564 LOC100996564 - - - X - protein SSX11-like pseudo - - - - 20121209 -9606 100996566 LOC100996566 - - - Y - putative colon cancer-associated antigen SK1-like pseudo - - - - 20121209 -9606 100996567 LOC100996567 - - - 10 - anthrax toxin receptor-like protein-coding - - - - 20121222 -9606 100996568 LOC100996568 - - - 1 - uncharacterized LOC100996568 pseudo - - - - 20121222 -9606 100996569 LOC100996569 - - - 9 - uncharacterized LOC100996569 miscRNA - - - - 20121230 -9606 100996570 LOC100996570 - - - 1 - uncharacterized LOC100996570 miscRNA - - - - 20121222 -9606 100996571 LOC100996571 - - - 21 - tigger transposable element-derived protein 1-like protein-coding - - - - 20121230 -9606 100996572 LOC100996572 - - - Y - putative colon cancer-associated antigen SK1-like pseudo - - - - 20121209 -9606 100996573 LOC100996573 - - - 12 - uncharacterized LOC100996573 protein-coding - - - - 20121222 -9606 100996574 LOC100996574 - - - 9 - uncharacterized LOC100996574 protein-coding - - - - 20121222 -9606 100996575 LOC100996575 - - - 1 - neuroblastoma breakpoint family member 3-like protein-coding - - - - 20121222 -9606 100996577 LOC100996577 - - - 7 - putative uncharacterized protein encoded by LINC00269-like protein-coding - - - - 20121222 -9606 100996578 LOC100996578 - - - 11 - uncharacterized LOC100996578 miscRNA - - - - 20121222 -9606 100996579 LOC100996579 - - - 2 - uncharacterized LOC100996579 miscRNA - - - - 20121222 -9606 100996580 LOC100996580 - - - 22 - glutathione S-transferase theta-1-like pseudo - - - - 20121209 -9606 100996582 LOC100996582 - - - 9 - protein FAM74A4/A6-like pseudo - - - - 20121209 -9606 100996583 LOC100996583 - - - 1 - uncharacterized LOC100996583 miscRNA - - - - 20121222 -9606 100996584 LOC100996584 - - - 2 - uncharacterized LOC100996584 protein-coding - - - - 20121222 -9606 100996585 LOC100996585 - - - 4 - uncharacterized LOC100996585 pseudo - - - - 20121209 -9606 100996586 LOC100996586 - - - 8 - Ig lambda chain V region 4A-like other - - - - 20121209 -9606 100996587 LOC100996587 - - - 1 - uncharacterized LOC100996587 miscRNA - - - - 20121222 -9606 100996588 LOC100996588 - - - 22 - glutathione S-transferase theta-1-like pseudo - - - - 20121209 -9606 100996589 LOC100996589 - - - 14 - uncharacterized LOC100996589 miscRNA - - - - 20121222 -9606 100996590 LOC100996590 - - - 9 - uncharacterized LOC100996590 miscRNA - - - - 20121102 -9606 100996592 LOC100996592 - - - 1 - uncharacterized LOC100996592 miscRNA - - - - 20121222 -9606 100996593 LOC100996593 - - - 21 - histone demethylase UTY-like pseudo - - - - 20121209 -9606 100996594 LOC100996594 - - - 22 - glutathione S-transferase theta-4-like protein-coding - - - - 20121222 -9606 100996595 LOC100996595 - - - 1 - uncharacterized LOC100996595 miscRNA - - - - 20121222 -9606 100996596 LOC100996596 - - - 22 - small nuclear ribonucleoprotein-associated protein N-like pseudo - - - - 20121209 -9606 100996597 LINC00690 - - HGNC:44503 3 - long intergenic non-protein coding RNA 690 miscRNA LINC00690 long intergenic non-protein coding RNA 690 O - 20121230 -9606 100996598 LOC100996598 - - - 22 - uncharacterized LOC100996598 protein-coding - - - - 20121222 -9606 100996599 LOC100996599 - - - 15 - putative transmembrane protein FLJ36131-like protein-coding - - - - 20121222 -9606 100996600 LOC100996600 - - - 2 - Ig kappa chain V-II region RPMI 6410-like other - - - - 20121209 -9606 100996601 LOC100996601 - - - 9 - uncharacterized LOC100996601 miscRNA - - - - 20121222 -9606 100996602 LOC100996602 - - - 20 - uncharacterized LOC100996602 protein-coding - - - - 20121222 -9606 100996603 LOC100996603 - - - 1 - uncharacterized LOC100996603 pseudo - - - - 20121209 -9606 100996605 LOC100996605 - - - 10 - putative calcium-sensing receptor-like 1-like protein-coding - - - - 20121222 -9606 100996606 LOC100996606 - - - 2 - uncharacterized LOC100996606 protein-coding - - - - 20121222 -9606 100996608 LOC100996608 - - - 11 - putative protein RIG-like pseudo - - - - 20121209 -9606 100996609 LOC100996609 - - - 21 - uncharacterized LOC100996609 miscRNA - - - - 20121222 -9606 100996610 LOC100996610 - - - 10 - putative uncharacterized protein LOC65996-like protein-coding - - - - 20121222 -9606 100996611 LOC100996611 - - - 15 - uncharacterized LOC100996611 pseudo - - - - 20121209 -9606 100996612 LOC100996612 - - - 9 - putative UPF0633 protein LOC554249-like protein-coding - - - - 20121222 -9606 100996613 LOC100996613 - - - 14 - uncharacterized LOC100996613 miscRNA - - - - 20121222 -9606 100996614 LOC100996614 - - - 1 - putative uncharacterized protein encoded by LINC00596-like protein-coding - - - - 20121222 -9606 100996615 LOC100996615 - - - 7 - uncharacterized LOC100996615 miscRNA - - - - 20121222 -9606 100996616 LOC100996616 - - - 2 - uncharacterized LOC100996616 miscRNA - - - - 20121222 -9606 100996618 LOC100996618 - - - 11 - uncharacterized LOC100996618 protein-coding - - - - 20121222 -9606 100996619 LOC100996619 - - - 21 - uncharacterized LOC100996619 protein-coding - - - - 20121222 -9606 100996620 LOC100996620 - - - 1 - uncharacterized LOC100996620 miscRNA - - - - 20121222 -9606 100996621 LOC100996621 - - - 10 - uncharacterized LOC100996621 pseudo - - - - 20121209 -9606 100996622 LOC100996622 - - - 21 - coiled-coil domain-containing protein 29-like pseudo - - - - 20121209 -9606 100996623 LOC100996623 - - - 4 - uncharacterized LOC100996623 miscRNA - - - - 20121222 -9606 100996624 LOC100996624 - - - 3 - uncharacterized LOC100996624 miscRNA - - - - 20121222 -9606 100996625 LOC100996625 - - - 15 - putative transmembrane protein FLJ36131-like protein-coding - - - - 20121222 -9606 100996626 LOC100996626 - - - 1 - proline-rich nuclear receptor coactivator 2-like protein-coding - - - - 20121222 -9606 100996628 LOC100996628 - - - 4 - uncharacterized LOC100996628 miscRNA - - - - 20121222 -9606 100996629 LOC100996629 - - - 10 - uncharacterized LOC100996629 miscRNA - - - - 20121230 -9606 100996630 LOC100996630 - - - 1 - uncharacterized LOC100996630 miscRNA - - - - 20121222 -9606 100996631 LOC100996631 - - Ensembl:ENSG00000215046|Vega:OTTHUMG00000152592 X - T-complex protein 11 homolog protein-coding - - - - 20121222 -9606 100996632 LOC100996632 - - - 4 - uncharacterized LOC100996632 miscRNA - - - - 20121222 -9606 100996633 LOC100996633 - - - 8 - uncharacterized LOC100996633 protein-coding - - - - 20121222 -9606 100996634 LOC100996634 - - Ensembl:ENSG00000243587|Vega:OTTHUMG00000015337 6 - transmembrane protein FLJ37396-like protein-coding - - - - 20121222 -9606 100996635 LOC100996635 - - - 1 - uncharacterized LOC100996635 miscRNA - - - - 20121222 -9606 100996636 LOC100996636 - - - 1 - uncharacterized LOC100996636 miscRNA - - - - 20121222 -9606 100996637 LOC100996637 - - - 2 - uncharacterized LOC100996637 miscRNA - - - - 20121222 -9606 100996638 LOC100996638 - - - 6 - uncharacterized LOC100996638 pseudo - - - - 20121209 -9606 100996639 LOC100996639 - - - 12 - ATP synthase lipid-binding protein, mitochondrial-like pseudo - - - - 20121209 -9606 100996641 LOC100996641 - - - 6 - coiled-coil domain-containing protein 162-like protein-coding - - - - 20121222 -9606 100996642 LOC100996642 - - - 10 - poly(ADP-ribose) glycohydrolase-like protein-coding - - - - 20121222 -9606 100996643 LOC100996643 - - - 9 - monofunctional C1-tetrahydrofolate synthase, mitochondrial-like protein-coding - - - - 20121222 -9606 100996644 LOC100996644 - - - 15 - putative transmembrane protein FLJ36131-like protein-coding - - - - 20121222 -9606 100996645 LOC100996645 - - - 5 - uncharacterized LOC100996645 miscRNA - - - - 20121222 -9606 100996646 LOC100996646 - - - 11 - uncharacterized LOC100996646 protein-coding - - - - 20121222 -9606 100996647 LOC100996647 - - - 9 - uncharacterized LOC100996647 pseudo - - - - 20121209 -9606 100996648 LOC100996648 - - Ensembl:ENSG00000215029|Vega:OTTHUMG00000152591 X - T-complex protein 11 homolog protein-coding - - - - 20121222 -9606 100996649 ALG1L14P - - HGNC:44383 4 - asparagine-linked glycosylation 1-like 14, pseudogene pseudo ALG1L14P asparagine-linked glycosylation 1-like 14, pseudogene O - 20121209 -9606 100996650 LOC100996650 - - - 15 - uncharacterized LOC100996650 pseudo - - - - 20121209 -9606 100996652 LOC100996652 - - - 6 - uncharacterized LOC100996652 pseudo - - - - 20121209 -9606 100996653 LOC100996653 - - - 15 - uncharacterized LOC100996653 miscRNA - - - - 20121222 -9606 100996654 LOC100996654 - - - 7 - uncharacterized LOC100996654 miscRNA - - - - 20121222 -9606 100996656 LOC100996656 - - - 3 - uncharacterized LOC100996656 miscRNA - - - - 20121222 -9606 100996657 LOC100996657 - - - 1 - serine/arginine-rich splicing factor 10-like protein-coding - - - - 20121222 -9606 100996658 LOC100996658 - - - 20 - uncharacterized LOC100996658 miscRNA - - - - 20121222 -9606 100996659 LOC100996659 - - - 15 - uncharacterized LOC100996659 pseudo - - - - 20121209 -9606 100996660 LOC100996660 - - - 17 - uncharacterized LOC100996660 miscRNA - - - - 20121222 -9606 100996661 LOC100996661 - - - 3 - uncharacterized LOC100996661 protein-coding - - - - 20121222 -9606 100996662 LOC100996662 - - - 8 - uncharacterized LOC100996662 miscRNA - - - - 20121222 -9606 100996663 LOC100996663 - - - 15 - uncharacterized LOC100996663 miscRNA - - - - 20121222 -9606 100996664 LOC100996664 - - - 14 - uncharacterized LOC100996664 miscRNA - - - - 20121222 -9606 100996665 LOC100996665 - - - 19 - uncharacterized LOC100996665 miscRNA - - - - 20121222 -9606 100996667 LOC100996667 - - - 9 - uncharacterized LOC100996667 miscRNA - - - - 20121222 -9606 100996668 LOC100996668 - - - 10 - uncharacterized LOC100996668 miscRNA - - - - 20121222 -9606 100996669 LOC100996669 - - - 18 - uncharacterized LOC100996669 miscRNA - - - - 20121230 -9606 100996670 LOC100996670 - - - 15 - zinc finger FYVE domain-containing protein 9-like pseudo - - - - 20121209 -9606 100996671 LOC100996671 - - - 12 - uncharacterized LOC100996671 miscRNA - - - - 20121222 -9606 100996672 LOC100996672 - - - 19 - uncharacterized LOC100996672 miscRNA - - - - 20121222 -9606 100996673 LOC100996673 - - - 20 - uncharacterized LOC100996673 miscRNA - - - - 20121222 -9606 100996675 LOC100996675 - - - 15 - putative uncharacterized protein DKFZp434L187-like protein-coding - - - - 20121222 -9606 100996676 LOC100996676 - - - 20 - uncharacterized LOC100996676 pseudo - - - - 20121209 -9606 100996677 LOC100996677 - - - 7 - uncharacterized LOC100996677 protein-coding - - - - 20121222 -9606 100996679 LOC100996679 - - - 12 - uncharacterized LOC100996679 miscRNA - - - - 20121222 -9606 100996680 LOC100996680 - - - 7 - uncharacterized LOC100996680 pseudo - - - - 20121209 -9606 100996681 LOC100996681 - - - 19 - uncharacterized LOC100996681 miscRNA - - - - 20121222 -9606 100996682 LOC100996682 - - - 4 - uncharacterized LOC100996682 pseudo - - - - 20121209 -9606 100996684 AKR1C5P - - HGNC:44679 10 - aldo-keto reductase family 1, member C5, pseudogene pseudo AKR1C5P aldo-keto reductase family 1, member C5, pseudogene O - 20121207 -9606 100996685 LOC100996685 - - - 2 - putative uncharacterized protein ENSP00000272607-like protein-coding - - - - 20121222 -9606 100996686 LOC100996686 - - - 12 - methyltransferase-like protein 7A-like pseudo - - - - 20121209 -9606 100996688 LOC100996688 - - - 17 - uncharacterized LOC100996688 pseudo - - - - 20121209 -9606 100996689 LOC100996689 - - - 9 - uncharacterized LOC100996689 protein-coding - - - - 20121222 -9606 100996693 LOC100996693 - - - 2 - CAVP-target protein-like protein-coding - - - - 20121222 -9606 100996694 LOC100996694 - - - 4 - uncharacterized LOC100996694 miscRNA - - - - 20121222 -9606 100996695 LOC100996695 - - - 20 - uncharacterized LOC100996695 miscRNA - - - - 20121222 -9606 100996696 LOC100996696 - - - 12 - polyadenylate-binding protein 4-like pseudo - - - - 20121209 -9606 100996697 LOC100996697 - - - 10 - uncharacterized LOC100996697 pseudo - - - - 20121209 -9606 100996698 LOC100996698 - - - 2 - uncharacterized LOC100996698 pseudo - - - - 20121209 -9606 100996699 LOC100996699 - - - Un - uncharacterized LOC100996699 pseudo - - - - 20121209 -9606 100996700 LOC100996700 - - - 7 - putative uncharacterized protein encoded by LINC00269-like protein-coding - - - - 20121222 -9606 100996701 LOC100996701 - - - 12 - uncharacterized LOC100996701 protein-coding - - - - 20121222 -9606 100996702 LOC100996702 - - - 1 - putative uncharacterized protein FLJ36116-like protein-coding - - - - 20121222 -9606 100996703 LOC100996703 - - - 4 - uncharacterized LOC100996703 pseudo - - - - 20121209 -9606 100996707 LOC100996707 - - - 6 - putative uncharacterized protein C6orf214-like protein-coding - - - - 20121222 -9606 100996709 LOC100996709 - - - 17 - ADP-ribosylation factor-like protein 17-like protein-coding - - - - 20121222 -9606 100996710 LOC100996710 - - - 17 - c-Jun-amino-terminal kinase-interacting protein 1-like pseudo - - - - 20121222 -9606 100996711 LOC100996711 - - - 1 - uncharacterized LOC100996711 protein-coding - - - - 20121222 -9606 100996712 SRGAP2D - - MIM:614705 1 - SLIT-ROBO Rho GTPase-activating protein 2D protein-coding - - - SLIT-ROBO Rho GTPase-activating protein 2-like 20121222 -9606 100996713 LOC100996713 - - - 1 - uncharacterized LOC100996713 protein-coding - - - - 20121222 -9606 100996715 LOC100996715 - - - 1 - uncharacterized LOC100996715 protein-coding - - - - 20121222 -9606 100996716 LOC100996716 - - - 1 - vesicle-trafficking protein SEC22b-like pseudo - - - - 20121102 -9606 100996717 LOC100996717 - - - 1 - neurogenic locus notch homolog protein 2-like pseudo - - - - 20121222 -9606 100996718 LOC100996718 - - - 11 - olfactory receptor 9G1-like protein-coding - - - - 20121222 -9606 100996719 LOC100996719 - - - 1 - uncharacterized LOC100996719 pseudo - - - - 20121102 -9606 100996720 LOC100996720 - - - 1 - uncharacterized LOC100996720 protein-coding - - - - 20121222 -9606 100996721 LOC100996721 - - - 1 - UPF0627 protein ENSP00000358171-like protein-coding - - - - 20121222 -9606 100996722 LOC100996722 - - - 1 - ubiquitin-conjugating enzyme E2 D4-like pseudo - - - - 20121102 -9606 100996723 LOC100996723 - - - 1 - uncharacterized LOC100996723 pseudo - - - - 20121222 -9606 100996724 LOC100996724 - - - 1 - myomegalin-like protein-coding - - - - 20121222 -9606 100996725 LOC100996725 - - - 1 - peptidyl-prolyl cis-trans isomerase A-like 4A/B/C-like protein-coding - - - - 20121222 -9606 100996726 LOC100996726 - - - 1 - protein FAM91A1-like pseudo - - - - 20121102 -9606 100996727 LOC100996727 - - - 3 - peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121102 -9606 100996728 LOC100996728 - - - 1 - putative uncharacterized protein FLJ35883-like pseudo - - - - 20121102 -9606 100996729 LOC100996729 - - - 17 - ubiquitin carboxyl-terminal hydrolase 6-like pseudo - - - - 20121209 -9606 100996730 LOC100996730 - - - 1 - D(1B) dopamine receptor-like pseudo - - - - 20121222 -9606 100996731 LOC100996731 - - - 1 - otopetrin-1-like pseudo - - - - 20121102 -9606 100996732 LOC100996732 - - - 1 - uncharacterized LOC100996732 miscRNA - - - - 20121222 -9606 100996734 LOC100996734 - - - 1 - D(1B) dopamine receptor-like pseudo - - - - 20121222 -9606 100996735 LOC100996735 - - - 1 - uncharacterized LOC100996735 miscRNA - - - - 20121222 -9606 100996736 LOC100996736 - - - 1 - otopetrin-1-like pseudo - - - - 20121102 -9606 100996737 LOC100996737 - - - 1 - otopetrin-1-like pseudo - - - - 20121102 -9606 100996738 LOC100996738 - - - 15 - uncharacterized LOC100996738 pseudo - - - - 20121102 -9606 100996739 LOC100996739 - - - 1 - Ig kappa chain V-I region Walker-like other - - - - 20121102 -9606 100996740 LOC100996740 - - - 1 - uncharacterized LOC100996740 protein-coding - - - - 20121222 -9606 100996741 LOC100996741 - - - 1 - UPF0627 protein ENSP00000358171-like protein-coding - - - - 20121222 -9606 100996743 LOC100996743 - - - 19 - killer cell immunoglobulin-like receptor 3DL2-like pseudo - - - - 20121222 -9606 100996745 LOC100996745 - - - 17 - dead end protein homolog 1-like pseudo - - - - 20121102 -9606 100996746 LOC100996746 - - - 7 - putative speedy protein E8-like protein-coding - - - - 20121222 -9606 100996747 LOC100996747 - - - 17 - 40S ribosomal protein S26-like protein-coding - - - - 20121222 -9606 100996748 LOC100996748 - - - 17 - uncharacterized LOC100996748 miscRNA - - - - 20121222 -9606 100996749 LOC100996749 - - - 7 - postmeiotic segregation increased 4-like protein-like protein-coding - - - - 20121222 -9606 100996750 LOC100996750 - - - 17 - keratin-associated protein 4-7-like protein-coding - - - - 20121222 -9606 100996752 LOC100996752 - - - 1 - uncharacterized LOC100996752 protein-coding - - - - 20121222 -9606 100996753 LOC100996753 - - - 7 - postmeiotic segregation increased 4-like protein-like pseudo - - - - 20121222 -9606 100996754 LOC100996754 - - - 1 - peptidyl-prolyl cis-trans isomerase A-like 4G-like protein-coding - - - - 20121222 -9606 100996756 LOC100996756 - - - 1 - uncharacterized LOC100996756 miscRNA - - - - 20121222 -9606 100996758 LOC100996758 - - - 10 - neuropeptide Y receptor type 4-like protein-coding - - - - 20121222 -9606 100996760 LOC100996760 - - - 10 - uncharacterized LOC100996760 protein-coding - - - - 20121222 -9606 100996761 LOC100996761 - - - 1 - myomegalin-like protein-coding - - - - 20121222 -9606 100996762 LOC100996762 - - - 17 - keratin-associated protein 9-2-like protein-coding - - - - 20121222 -9606 100996763 LOC100996763 - - - 1 - uncharacterized LOC100996763 pseudo - - - - 20121222 -9606 100996764 LOC100996764 - - - 1 - uncharacterized LOC100996764 miscRNA - - - - 20121222 -9606 100996765 LOC100996765 - - - 7 - 60S ribosomal protein L26-like pseudo - - - - 20121102 -9606 100996766 LOC100996766 - - - 7 - uncharacterized LOC100996766 pseudo - - - - 20121102 -9606 100996767 LOC100996767 - - - 7 - peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121102 -9606 100996768 LOC100996768 - - - 7 - putative uncharacterized protein FLJ46235-like protein-coding - - - - 20121222 -9606 100996770 LOC100996770 - - - 2 - uncharacterized LOC100996770 protein-coding - - - - 20121222 -9606 100996771 LOC100996771 - - - 14 - Ig heavy chain V region 102-like other - - - - 20121102 -9606 100996775 LOC100996775 - - - 2 - uncharacterized LOC100996775 pseudo - - - - 20121102 -9606 100996777 LOC100996777 - - - 5 - uncharacterized LOC100996777 pseudo - - - - 20121102 -9606 100996779 LOC100996779 - - - Un - protein FRG1-like protein-coding - - - - 20121222 -9606 100996780 LOC100996780 - - - 22 - phosphatidylinositol 4-kinase alpha-like protein-coding - - - - 20121222 -9606 100996781 LOC100996781 - - - 7 - uncharacterized LOC100996781 pseudo - - - - 20121102 -9606 100996782 LOC100996782 - - - Un - mediator of RNA polymerase II transcription subunit 18-like protein-coding - - - - 20121222 -9606 100996783 LOC100996783 - - - 7 - uncharacterized LOC100996783 pseudo - - - - 20121102 -9606 100996784 LOC100996784 - - - 17 - chorionic somatomammotropin hormone-like protein-coding - - - - 20121222 -9606 100996785 LOC100996785 - - - X - eukaryotic translation initiation factor 4B-like pseudo - - - - 20121102 -9606 100996786 LOC100996786 - - - 5 - aconitate hydratase, mitochondrial-like pseudo - - - - 20121102 -9606 100996787 LOC100996787 - - - 7 - uncharacterized LOC100996787 miscRNA - - - - 20121222 -9606 100996788 LOC100996788 - - - 16 - uncharacterized LOC100996788 miscRNA - - - - 20121222 -9606 100996789 LOC100996789 - - - Un - double homeobox protein 4-like protein 2-like pseudo - - - - 20121102 -9606 100996791 LOC100996791 - - - 3 - uncharacterized LOC100996791 protein-coding - - - - 20121222 -9606 100996792 LOC100996792 - - - Un - dual specificity mitogen-activated protein kinase kinase 3-like protein-coding - - - - 20121222 -9606 100996793 LOC100996793 - - - 22 - uncharacterized LOC100996793 miscRNA - - - - 20121222 -9606 100996794 LOC100996794 - - - 11 - olfactory receptor 6M1-like pseudo - - - - 20121102 -9606 100996795 LOC100996795 - - - 7 - uncharacterized LOC100996795 miscRNA - - - - 20121222 -9606 100996796 LOC100996796 - - - 9 - protein FAM75D1-like pseudo - - - - 20121222 -9606 100996797 LOC100996797 - - - 10 - uncharacterized LOC100996797 miscRNA - - - - 20121222 -9606 100996798 LOC100996798 - - - 7 - uncharacterized LOC100996798 miscRNA - - - - 20121222 -9606 100996799 LOC100996799 - - - 16 - uncharacterized LOC100996799 pseudo - - - - 20121102 -9606 100996800 LOC100996800 - - - 14 - Ig heavy chain V region 5A-like other - - - - 20121102 -9606 100996802 LOC100996802 - - - Un - uncharacterized LOC100996802 pseudo - - - - 20121102 -9606 100996803 LOC100996803 - - - Un - tektin-4-like pseudo - - - - 20121102 -9606 100996805 LOC100996805 - - - 14 - uncharacterized LOC100996805 protein-coding - - - - 20121222 -9606 100996808 LOC100996808 - - - Un - protein FRG1-like pseudo - - - - 20121102 -9606 100996809 LOC100996809 - - - 6 - HLA class II histocompatibility antigen, DR beta 3 chain-like pseudo - - - - 20121222 -9606 100996810 LOC100996810 - - - 16 - uncharacterized LOC100996810 miscRNA - - - - 20121222 -9606 100996812 LOC100996812 - - - 7 - protein FAM27D1-like pseudo - - - - 20121102 -9606 100996813 LOC100996813 - - - 17 - multidrug and toxin extrusion protein 2-like pseudo - - - - 20121102 -9606 100996814 LOC100996814 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100996815 LOC100996815 - - - 7 - uncharacterized LOC100996815 miscRNA - - - - 20121222 -9606 100996816 LOC100996816 - - - 17 - uncharacterized LOC100996816 miscRNA - - - - 20121222 -9606 100996817 LOC100996817 - - - 22 - putative POM121-like protein 1-like protein-coding - - - - 20121222 -9606 100996818 LOC100996818 - - - Y - cell division cycle protein 27 homolog pseudo - - - - 20121102 -9606 100996819 LOC100996819 - - - Un - phosphoserine phosphatase-like protein-coding - - - - 20121222 -9606 100996820 LOC100996820 - - - 2 - POTE ankyrin domain family member I-like protein-coding - - - - 20121222 -9606 100996821 LOC100996821 - - - 17 - uncharacterized LOC100996821 pseudo - - - - 20121102 -9606 100996822 LOC100996822 - - - Un - RNA-binding motif protein, Y chromosome, family 1 member F/J-like pseudo - - - - 20121222 -9606 100996823 LOC100996823 - - - Un - uncharacterized LOC100996823 pseudo - - - - 20121102 -9606 100996825 LOC100996825 - - - Un - IQ motif and SEC7 domain-containing protein 3-like protein-coding - - - - 20121222 -9606 100996826 LOC100996826 - - - Un - Ig heavy chain V region 102-like other - - - - 20121102 -9606 100996827 LOC100996827 - - - 9 - GAS2-like protein 1-like pseudo - - - - 20121102 -9606 100996828 LOC100996828 - - - 8 - uncharacterized LOC100996828 pseudo - - - - 20121102 -9606 100996830 LOC100996830 - - - X - uncharacterized LOC100996830 protein-coding - - - - 20121222 -9606 100996831 LOC100996831 - - - 21 - uncharacterized LOC100996831 protein-coding - - - - 20121222 -9606 100996832 LOC100996832 - - - Un - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 100996834 LOC100996834 - - - 3 - uncharacterized LOC100996834 miscRNA - - - - 20121222 -9606 100996835 LOC100996835 - - - X - ATP-dependent RNA helicase DDX3Y-like pseudo - - - - 20121102 -9606 100996839 LOC100996839 - - - Un - putative uncharacterized protein FLJ46235-like pseudo - - - - 20121222 -9606 100996840 LOC100996840 - - - Y - unconventional myosin-Vb-like pseudo - - - - 20121102 -9606 100996842 LOC100996842 - - - 17 - uncharacterized LOC100996842 protein-coding - - - - 20121222 -9606 100996843 LOC100996843 - - - Un - ATP-sensitive inward rectifier potassium channel 12-like protein-coding - - - - 20121222 -9606 100996844 LOC100996844 - - - Un - mucin-3A-like protein-coding - - - - 20121222 -9606 100996845 LOC100996845 - - - 16 - uncharacterized LOC100996845 protein-coding - - - - 20121222 -9606 100996846 LOC100996846 - - - Un - uncharacterized LOC100996846 pseudo - - - - 20121102 -9606 100996847 LOC100996847 - - - 1 - uncharacterized LOC100996847 miscRNA - - - - 20121222 -9606 100996848 LOC100996848 - - - X - FERM and PDZ domain-containing protein 3-like protein-coding - - - - 20121222 -9606 100996849 LOC100996849 - - - Un - tektin-4-like pseudo - - - - 20121102 -9606 100996851 LOC100996851 - - - 10 - E3 ubiquitin-protein ligase XIAP-like pseudo - - - - 20121209 -9606 100996852 LOC100996852 - - - 6 - non-histone chromosomal protein HMG-17-like protein-coding - - - - 20121222 -9606 100996853 LOC100996853 - - - Y - uncharacterized LOC100996853 pseudo - - - - 20121102 -9606 100996854 LOC100996854 - - - 1 - uncharacterized LOC100996854 pseudo - - - - 20121102 -9606 100996858 LOC100996858 - - - 9 - uncharacterized LOC100996858 pseudo - - - - 20121102 -9606 100996859 LOC100996859 - - - 4 - uncharacterized LOC100996859 protein-coding - - - - 20121222 -9606 100996860 LOC100996860 - - - 6 - uncharacterized LOC100996860 pseudo - - - - 20121209 -9606 100996861 LOC100996861 - - - Un - zinc finger protein 717-like pseudo - - - - 20121102 -9606 100996862 LOC100996862 - - - Un - ankyrin repeat domain-containing protein 36A-like pseudo - - - - 20121222 -9606 100996863 LOC100996863 - - - 4 - putative uncharacterized protein C4orf12-like protein-coding - - - - 20121222 -9606 100996865 LOC100996865 - - - 4 - uncharacterized LOC100996865 pseudo - - - - 20121102 -9606 100996866 LOC100996866 - - - 2 - uncharacterized LOC100996866 miscRNA - - - - 20121222 -9606 100996867 LOC100996867 - - - Y - RNA-binding motif protein, Y chromosome, family 1 member F/J-like pseudo - - - - 20121102 -9606 100996868 LOC100996868 - - - 1 - uncharacterized LOC100996868 protein-coding - - - - 20121222 -9606 100996869 LOC100996869 - - - 15 - UPF0621 protein B-like protein-coding - - - - 20121222 -9606 100996870 LOC100996870 - - - 9 - uncharacterized LOC100996870 miscRNA - - - - 20121222 -9606 100996872 LOC100996872 - - - 7 - uncharacterized LOC100996872 protein-coding - - - - 20121222 -9606 100996873 LOC100996873 - - - 20 - uncharacterized LOC100996873 miscRNA - - - - 20121222 -9606 100996874 LOC100996874 - - - X - TIMELESS-interacting protein-like pseudo - - - - 20121102 -9606 100996875 LOC100996875 - - - 11 - uncharacterized LOC100996875 miscRNA - - - - 20121222 -9606 100996876 LOC100996876 - - - 15 - uncharacterized LOC100996876 miscRNA - - - - 20121222 -9606 100996877 LOC100996877 - - - 10 - uncharacterized LOC100996877 pseudo - - - - 20121102 -9606 100996878 LOC100996878 - - - 11 - uncharacterized LOC100996878 pseudo - - - - 20121102 -9606 100996880 LOC100996880 - - - 2 - uncharacterized LOC100996880 pseudo - - - - 20121102 -9606 100996881 LOC100996881 - - - 7 - uncharacterized LOC100996881 pseudo - - - - 20121102 -9606 100996884 LOC100996884 - - - 2 - putative fatty acyl-CoA reductase 2-like protein FLJ43933-like pseudo - - - - 20121222 -9606 100996885 LOC100996885 - - - 9 - putative uncharacterized protein FLJ45355-like protein-coding - - - - 20121222 -9606 100996886 LOC100996886 - - - 1 - complement factor H-related protein 3-like pseudo - - - - 20121209 -9606 100996887 LOC100996887 - - - 2 - tubulin alpha-3E chain-like protein-coding - - - - 20121222 -9606 100996888 LOC100996888 - - - Un - putative uncharacterized protein FLJ11871-like protein-coding - - - - 20121222 -9606 100996889 LOC100996889 - - - 1 - nuclear ubiquitous casein and cyclin-dependent kinase substrate 1-like pseudo - - - - 20121102 -9606 100996890 LOC100996890 - - - Un - uncharacterized LOC100996890 protein-coding - - - - 20121222 -9606 100996892 LOC100996892 - - - 1 - uncharacterized LOC100996892 pseudo - - - - 20121102 -9606 100996894 LOC100996894 - - - 10 - uncharacterized LOC100996894 pseudo - - - - 20121102 -9606 100996895 LOC100996895 - - - 10 - uncharacterized LOC100996895 pseudo - - - - 20121102 -9606 100996897 LOC100996897 - - - 5 - uncharacterized LOC100996897 protein-coding - - - - 20121222 -9606 100996898 LOC100996898 - - - 15 - zinc finger FYVE domain-containing protein 9-like pseudo - - - - 20121102 -9606 100996899 LOC100996899 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100996900 LOC100996900 - - - 15 - uncharacterized LOC100996900 pseudo - - - - 20121102 -9606 100996901 LOC100996901 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 100996902 LOC100996902 - - - 2 - uncharacterized LOC100996902 miscRNA - - - - 20121222 -9606 100996903 LOC100996903 - - - 4 - uncharacterized LOC100996903 protein-coding - - - - 20121222 -9606 100996904 LOC100996904 - - - 5 - uncharacterized LOC100996904 pseudo - - - - 20121222 -9606 100996906 LOC100996906 - - - 17 - F-box/WD repeat-containing protein 10-like protein-coding - - - - 20121222 -9606 100996909 LOC100996909 - - - Un - anaphase-promoting complex subunit 1-like protein-coding - - - - 20121222 -9606 100996910 LOC100996910 - - - 7 - uncharacterized LOC100996910 pseudo - - - - 20121102 -9606 100996911 LOC100996911 - - - Y - uncharacterized LOC100996911 pseudo - - - - 20121102 -9606 100996912 LOC100996912 - - - Y - uncharacterized LOC100996912 pseudo - - - - 20121102 -9606 100996914 LOC100996914 - - - 12 - uncharacterized LOC100996914 pseudo - - - - 20121102 -9606 100996916 LOC100996916 - - - 3 - uncharacterized LOC100996916 protein-coding - - - - 20121222 -9606 100996917 LOC100996917 - - - 9 - putative uncharacterized protein UNQ6494/PRO21346-like protein-coding - - - - 20121222 -9606 100996918 LOC100996918 - - - 4 - uncharacterized LOC100996918 miscRNA - - - - 20121222 -9606 100996919 LOC100996919 - - - 2 - putative T-cell surface glycoprotein CD8 beta-2 chain-like protein-coding - - - - 20121222 -9606 100996920 LOC100996920 - - - Un - uncharacterized LOC100996920 miscRNA - - - - 20121222 -9606 100996922 LOC100996922 - - - 7 - uncharacterized LOC100996922 pseudo - - - - 20121102 -9606 100996923 LOC100996923 - - - Un - uncharacterized LOC100996923 pseudo - - - - 20121102 -9606 100996924 LOC100996924 - - - 2 - uncharacterized LOC100996924 protein-coding - - - - 20121222 -9606 100996925 LOC100996925 - - - 19 - uncharacterized LOC100996925 protein-coding - - - - 20121222 -9606 100996926 LOC100996926 - - - Y - uncharacterized LOC100996926 pseudo - - - - 20121102 -9606 100996927 LOC100996927 - - - 10 - uncharacterized LOC100996927 pseudo - - - - 20121102 -9606 100996928 C7orf55-LUC7L2 - - Ensembl:ENSG00000146963 7 7q C7orf55-LUC7L2 readthrough protein-coding - - - C7orf55-LUC7L2 protein 20121230 -9606 100996930 LINC00621 - - HGNC:44227 13 13q12.12 long intergenic non-protein coding RNA 621 miscRNA LINC00621 long intergenic non-protein coding RNA 621 O - 20121120 -9606 100996934 UAQTL5 - - MIM:614746 19 19q13 Uric acid concentration, serum, QTL5 unknown - - - - 20120805 -9606 100996935 UAQTL6 - - MIM:614747 1 1q21.1 Uric acid concentration, serum, QTL6 unknown - - - - 20120805 -9606 100996939 PYURF - PREY HGNC:44317|Ensembl:ENSG00000145337|Vega:OTTHUMG00000130949 4 4q PIGY upstream reading frame protein-coding PYURF PIGY upstream reading frame O PIGY upstream reading frame protein|protein preY, mitochondrial 20121230 -9606 100996941 IL21-AS1 - - HGNC:40299 4 4q27 IL21 antisense RNA 1 miscRNA IL21-AS1 IL21 antisense RNA 1 O - 20120816 -9606 100996944 NDUFS5P1 - - HGNC:44039 6 6q23.3 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 1 pseudo NDUFS5P1 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 1 O - 20121021 -9606 100996949 PDA1 - - MIM:607411 12 12q24 Patent ductus arteriosus, susceptibility to unknown - - - - 20120822 -9606 101027084 LOC101027084 - - - 7 7q33 MAX pseudogene pseudo - - - - 20121230 -9606 101027378 ETM3 - - MIM:611456 6 6p23 Tremor, hereditary essential, 3 unknown - - - - 20120904 -9606 101054525 LOC101054525 - - - 11 - progesterone receptor antisense RNA miscRNA - - - - 20121230 -9606 101055624 NYS7 - - MIM:614826 1 1q31-q32.2 Nystagmus 7, congenital unknown - - - - 20120920 -9606 101055625 LOC101055625 - - - 12 12p uncharacterized LOC101055625 miscRNA - - - - 20121230 -9606 101056699 TRNAQ49P - TRNAL48 HGNC:35098 1 1p transfer RNA glutamine 49 (anticodon CUG) pseudogene pseudo TRNAQ49P transfer RNA glutamine 49 (anticodon CUG) pseudogene O - 20121230 -9606 101056700 NADKD1-AS1 - - HGNC:41143 5 5p13.2 NADKD1 antisense RNA 1 miscRNA NADKD1-AS1 NADKD1 antisense RNA 1 O - 20121006 -9606 101056702 HHV8S - - MIM:614836 3 3p22 Human herpesvirus 8, susceptibility to unknown - - - - 20121006 -9606 101056723 LINC00682 - - HGNC:44466 4 4p13 long intergenic non-protein coding RNA 682 miscRNA LINC00682 long intergenic non-protein coding RNA 682 O - 20121018 -9606 101059903 HMSN5 - - MIM:600361 4 4q34.3-q35.2 Hereditary motor and sensory neuropathy V unknown - - - - 20121018 -9606 101059905 TCEB1P26 - - HGNC:38731 Y Yq11.222 transcription elongation factor B (SIII), polypeptide 1 pseudogene 26 pseudo TCEB1P26 transcription elongation factor B (SIII), polypeptide 1 pseudogene 26 O - 20121027 -9606 101059906 LOC101059906 - - - 11 - collagen alpha-1(IV) chain-like protein-coding - - - - 20121222 -9606 101059907 LOC101059907 - - - Un - protein FAM207A-like pseudo - - - - 20121209 -9606 101059908 LOC101059908 - - - 17 - uncharacterized LOC101059908 protein-coding - - - - 20121222 -9606 101059909 LOC101059909 - - - X - G antigen family D member 5-like pseudo - - - - 20121209 -9606 101059910 LOC101059910 - - - 7 - uncharacterized LOC101059910 miscRNA - - - - 20121222 -9606 101059911 LOC101059911 - - - 11 - mucin-5AC-like protein-coding - - - - 20121222 -9606 101059912 LOC101059912 - - - X - G antigen family D member 5-like pseudo - - - - 20121209 -9606 101059913 LOC101059913 - - - 11 - uncharacterized LOC101059913 pseudo - - - - 20121209 -9606 101059914 LOC101059914 - - - 4 - protein FAM218A-like protein-coding - - - - 20121222 -9606 101059915 LOC101059915 - - - X - uncharacterized LOC101059915 protein-coding - - - - 20121222 -9606 101059916 LOC101059916 - - - 7 - nucleoporin NUP53-like pseudo - - - - 20121209 -9606 101059917 LOC101059917 - - - 14 - uncharacterized LOC101059917 miscRNA - - - - 20121222 -9606 101059918 LOC101059918 - - Ensembl:ENSG00000186399|Vega:OTTHUMG00000175646 15 - golgin subfamily A member 8-like protein 2-like protein-coding - - - - 20121222 -9606 101059919 LOC101059919 - - - 2 - uncharacterized LOC101059919 pseudo - - - - 20121209 -9606 101059920 LOC101059920 - - - 16 - protein FRG2-like pseudo - - - - 20121209 -9606 101059921 LOC101059921 - - - 7 - uncharacterized LOC101059921 protein-coding - - - - 20121222 -9606 101059922 LOC101059922 - - - 19 - uncharacterized LOC101059922 protein-coding - - - - 20121222 -9606 101059923 LOC101059923 - - - 1 - uncharacterized LOC101059923 pseudo - - - - 20121209 -9606 101059924 LOC101059924 - - - 3 - AKT-interacting protein-like pseudo - - - - 20121209 -9606 101059925 LOC101059925 - - - 8 - 40S ribosomal protein S24-like pseudo - - - - 20121209 -9606 101059926 LOC101059926 - - - 16 - protein FRG2-like-1-like pseudo - - - - 20121209 -9606 101059927 LOC101059927 - - - 6 - uncharacterized LOC101059927 pseudo - - - - 20121209 -9606 101059928 LOC101059928 - - - 3 - uncharacterized LOC101059928 miscRNA - - - - 20121222 -9606 101059929 LOC101059929 - - - 8 - uncharacterized LOC101059929 pseudo - - - - 20121209 -9606 101059930 LOC101059930 - - - 16 - angiogenic factor with G patch and FHA domains 1-like pseudo - - - - 20121209 -9606 101059931 LOC101059931 - - - 1 - uncharacterized LOC101059931 pseudo - - - - 20121209 -9606 101059932 LOC101059932 - - - 6 - iron-sulfur cluster assembly enzyme ISCU, mitochondrial-like pseudo - - - - 20121209 -9606 101059933 LOC101059933 - - - 8 - uncharacterized LOC101059933 pseudo - - - - 20121209 -9606 101059934 LOC101059934 - - - 11 - uncharacterized LOC101059934 protein-coding - - - - 20121222 -9606 101059935 LOC101059935 - - - 9 - coiled-coil domain-containing protein 29-like protein-coding - - - - 20121222 -9606 101059936 LOC101059936 - - - 16 - uncharacterized LOC101059936 pseudo - - - - 20121222 -9606 101059937 LOC101059937 - - - 3 - uncharacterized LOC101059937 miscRNA - - - - 20121222 -9606 101059938 LOC101059938 - - Ensembl:ENSG00000214967|Vega:OTTHUMG00000166307 16 - nuclear pore complex-interacting protein-like protein-coding - - - - 20121222 -9606 101059939 LOC101059939 - - - 15 - uncharacterized LOC101059939 miscRNA - - - - 20121222 -9606 101059940 LOC101059940 - - - 1 - peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like pseudo - - - - 20121209 -9606 101059941 LOC101059941 - - - 2 - uncharacterized LOC101059941 pseudo - - - - 20121209 -9606 101059942 LOC101059942 - - - 8 - uncharacterized LOC101059942 pseudo - - - - 20121209 -9606 101059943 LOC101059943 - - - 1 - uncharacterized LOC101059943 pseudo - - - - 20121209 -9606 101059944 LOC101059944 - - - Un - uncharacterized LOC101059944 pseudo - - - - 20121209 -9606 101059945 LOC101059945 - - - 21 - uncharacterized LOC101059945 pseudo - - - - 20121209 -9606 101059946 LOC101059946 - - - 2 - uncharacterized LOC101059946 miscRNA - - - - 20121222 -9606 101059947 LOC101059947 - - - 4 - uncharacterized LOC101059947 pseudo - - - - 20121222 -9606 101059948 LOC101059948 - - - 19 - uncharacterized LOC101059948 pseudo - - - - 20121209 -9606 101059949 LOC101059949 - - - Y|Un - coiled-coil domain-containing protein 29-like pseudo - - - - 20121222 -9606 101059950 LOC101059950 - - - 6 - small EDRK-rich factor 2-like pseudo - - - - 20121209 -9606 101059951 LOC101059951 - - - 1 - glycine cleavage system H protein, mitochondrial-like pseudo - - - - 20121209 -9606 101059952 LOC101059952 - - - 14 - uncharacterized LOC101059952 protein-coding - - - - 20121222 -9606 101059953 LOC101059953 - - Ensembl:ENSG00000214940|Vega:OTTHUMG00000166284 16 - nuclear pore complex-interacting protein-like protein-coding - - - - 20121222 -9606 101059954 LOC101059954 - - - 17 - uncharacterized LOC101059954 miscRNA - - - - 20121222 -9606 101059955 LOC101059955 - - - 1 - mitochondrial import inner membrane translocase subunit Tim17-A-like pseudo - - - - 20121209 -9606 101059956 LOC101059956 - - - 9 - mitochondrial intermembrane space import and assembly protein 40-like pseudo - - - - 20121209 -9606 101059957 LOC101059957 - - Ensembl:ENSG00000139865|Vega:OTTHUMG00000157369 14 - tetratricopeptide repeat protein 6-like protein-coding - - - - 20121222 -9606 101059958 LOC101059958 - - - 6 - uncharacterized LOC101059958 pseudo - - - - 20121209 -9606 101059959 LOC101059959 - - - 8 - uncharacterized LOC101059959 miscRNA - - - - 20121222 -9606 101059960 LOC101059960 - - - 20 - uncharacterized LOC101059960 pseudo - - - - 20121209 -9606 101059961 LOC101059961 - - Ensembl:ENSG00000232637|Vega:OTTHUMG00000158074 1 - neuroblastoma breakpoint family member 21-like protein-coding - - - - 20121222 -9606 101059962 LOC101059962 - - - Y - uncharacterized LOC101059962 pseudo - - - - 20121209 -9606 101059963 LOC101059963 - - - 3 - uncharacterized LOC101059963 pseudo - - - - 20121222 -9606 101059964 LOC101059964 - - - 9 - protein slowmo homolog 2-like pseudo - - - - 20121209 -9606 101059965 LOC101059965 - - - 1 - ribonuclease UK114-like pseudo - - - - 20121209 -9606 101059966 LOC101059966 - - - 8 - uncharacterized LOC101059966 protein-coding - - - - 20121222 -9606 101059967 LOC101059967 - - - X - PHD finger-like domain-containing protein 5A-like pseudo - - - - 20121209 -9606 101059968 LOC101059968 - - - 10 - putative uncharacterized protein C11orf81-like pseudo - - - - 20121209 -9606 101059969 LOC101059969 - - - 6 - dnaJ homolog subfamily B member 6-like pseudo - - - - 20121209 -9606 101059970 LOC101059970 - - - 1 - liprin-alpha-2-like protein-coding - - - - 20121222 -9606 101059971 LOC101059971 - - - 15 - uncharacterized LOC101059971 pseudo - - - - 20121209 -9606 101059972 LOC101059972 - - - 8 - myosin, light chain 9, regulatory pseudogene pseudo - - - - 20121230 -9606 101059973 LOC101059973 - - - 6 - uncharacterized LOC101059973 pseudo - - - - 20121209 -9606 101059974 LOC101059974 - - - 12 - p53 and DNA damage-regulated protein 1-like pseudo - - - - 20121209 -9606 101059975 LOC101059975 - - - 1 - uncharacterized LOC101059975 miscRNA - - - - 20121222 -9606 101059976 LOC101059976 - - - 1 - uncharacterized LOC101059976 protein-coding - - - - 20121222 -9606 101059977 LOC101059977 - - - 8 - uncharacterized LOC101059977 pseudo - - - - 20121209 -9606 101059978 LOC101059978 - - - 9 - uncharacterized LOC101059978 pseudo - - - - 20121209 -9606 101059979 LOC101059979 - - - 16 - uncharacterized LOC101059979 miscRNA - - - - 20121222 -9606 101059980 LOC101059980 - - - 1 - neuroblastoma breakpoint family member 20-like protein-coding - - - - 20121222 -9606 101059981 LOC101059981 - - - 22 - putative uncharacterized protein FLJ23865-like protein-coding - - - - 20121222 -9606 101059982 LOC101059982 - - - 3 - transcription elongation factor A protein-like 8-like pseudo - - - - 20121209 -9606 101059983 LOC101059983 - - - 9 - uncharacterized LOC101059983 pseudo - - - - 20121209 -9606 101059984 LOC101059984 - - Ensembl:ENSG00000248905|Vega:OTTHUMG00000172201 15 - formin-1-like protein-coding - - - - 20121222 -9606 101059985 LOC101059985 - - - 21 - uncharacterized LOC101059985 pseudo - - - - 20121209 -9606 101059986 LOC101059986 - - - 5 - cancer-related nucleoside-triphosphatase-like pseudo - - - - 20121209 -9606 101059987 LOC101059987 - - - 15 - microtubule-associated proteins 1A/1B light chain 3 beta 2-like pseudo - - - - 20121209 -9606 101059988 LOC101059988 - - - 4 - BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like pseudo - - - - 20121209 -9606 101059989 LOC101059989 - - - 7 - uncharacterized LOC101059989 pseudo - - - - 20121209 -9606 101059990 LOC101059990 - - - 2 - dnaJ homolog subfamily B member 6-like pseudo - - - - 20121209 -9606 101059991 LOC101059991 - - - 15 - golgin subfamily A member 6-like protein 2-like protein-coding - - - - 20121222 -9606 101059992 LOC101059992 - - - 16 - uncharacterized LOC101059992 miscRNA - - - - 20121222 -9606 101059993 LOC101059993 - - - 11 - uncharacterized LOC101059993 miscRNA - - - - 20121222 -9606 101059994 LOC101059994 - - - 16 - uncharacterized LOC101059994 miscRNA - - - - 20121222 -9606 101059995 LOC101059995 - - - 2 - uncharacterized LOC101059995 pseudo - - - - 20121209 -9606 101059996 LOC101059996 - - - 1 - uncharacterized LOC101059996 pseudo - - - - 20121209 -9606 101059997 LOC101059997 - - - 15 - abhydrolase domain-containing protein FAM108A1-like pseudo - - - - 20121209 -9606 101059998 LOC101059998 - - - 1 - uncharacterized LOC101059998 pseudo - - - - 20121209 -9606 101059999 LOC101059999 - - - 5 - uncharacterized LOC101059999 pseudo - - - - 20121209 -9606 101060000 LOC101060000 - - - 8 - dnaJ homolog subfamily B member 6-like pseudo - - - - 20121209 -9606 101060001 LOC101060001 - - - 11 - 40S ribosomal protein S24-like pseudo - - - - 20121209 -9606 101060002 LOC101060002 - - - 8 - tRNA methyltransferase 10 homolog B-like pseudo - - - - 20121209 -9606 101060003 LOC101060003 - - - 12 - uncharacterized LOC101060003 pseudo - - - - 20121209 -9606 101060004 LOC101060004 - - - 20 - uncharacterized LOC101060004 miscRNA - - - - 20121222 -9606 101060005 LOC101060005 - - - 8 - superoxide dismutase [Cu-Zn]-like pseudo - - - - 20121209 -9606 101060006 LOC101060006 - - - Un - NANOG neighbor homeobox-like pseudo - - - - 20121209 -9606 101060007 LOC101060007 - - - 5 - uncharacterized LOC101060007 miscRNA - - - - 20121222 -9606 101060008 LOC101060008 - - - 6 - uncharacterized LOC101060008 miscRNA - - - - 20121222 -9606 101060009 LOC101060009 - - - 1 - uncharacterized LOC101060009 miscRNA - - - - 20121222 -9606 101060010 LOC101060010 - - - 12 - uncharacterized LOC101060010 pseudo - - - - 20121209 -9606 101060011 LOC101060011 - - - 7 - putative IQ and AAA domain-containing protein 1-like protein-coding - - - - 20121222 -9606 101060012 LOC101060012 - - - 7 - uncharacterized LOC101060012 pseudo - - - - 20121209 -9606 101060013 LOC101060013 - - - 8 - UPF0454 protein C12orf49-like pseudo - - - - 20121209 -9606 101060014 LOC101060014 - - - 4 - uncharacterized LOC101060014 pseudo - - - - 20121209 -9606 101060015 LOC101060015 - - - 7 - uncharacterized LOC101060015 pseudo - - - - 20121209 -9606 101060016 LOC101060016 - - - 1 - signal peptidase complex subunit 3-like pseudo - - - - 20121209 -9606 101060017 LOC101060017 - - - 2 - uncharacterized LOC101060017 protein-coding - - - - 20121222 -9606 101060018 LOC101060018 - - - 22 - uncharacterized LOC101060018 protein-coding - - - - 20121222 -9606 101060019 LOC101060019 - - - 2 - uncharacterized LOC101060019 miscRNA - - - - 20121222 -9606 101060020 LOC101060020 - - - 12 - obg-like ATPase 1-like pseudo - - - - 20121209 -9606 101060021 LOC101060021 - - - 12 - ADP-ribosylation factor 1-like pseudo - - - - 20121209 -9606 101060022 LOC101060022 - - - 1 - uncharacterized LOC101060022 pseudo - - - - 20121222 -9606 101060023 LOC101060023 - - - 9 - uncharacterized LOC101060023 miscRNA - - - - 20121222 -9606 101060024 LOC101060024 - - - 5 - uncharacterized LOC101060024 protein-coding - - - - 20121222 -9606 101060025 LOC101060025 - - - 22 - uncharacterized LOC101060025 pseudo - - - - 20121209 -9606 101060026 LOC101060026 - - - 9 - coiled-coil domain-containing protein 29-like protein-coding - - - - 20121222 -9606 101060027 LOC101060027 - - - 21 - uncharacterized LOC101060027 miscRNA - - - - 20121222 -9606 101060028 LOC101060028 - - - 1 - uncharacterized LOC101060028 protein-coding - - - - 20121222 -9606 101060029 LOC101060029 - - - 7 - putative IQ and AAA domain-containing protein 1-like protein-coding - - - - 20121222 -9606 101060030 LOC101060030 - - - 2 - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like pseudo - - - - 20121209 -9606 101060031 LOC101060031 - - - 12 - 40S ribosomal protein S24-like pseudo - - - - 20121209 -9606 101060032 LOC101060032 - - - 10 - GTP-binding protein Rheb-like pseudo - - - - 20121209 -9606 101060033 LOC101060033 - - - 2 - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like pseudo - - - - 20121209 -9606 101060034 LOC101060034 - - - X - zinc finger protein ENSP00000375192-like pseudo - - - - 20121209 -9606 101060035 LOC101060035 - - - 5 - dnaJ homolog subfamily C member 24-like pseudo - - - - 20121209 -9606 101060036 LOC101060036 - - - 15 - uncharacterized LOC101060036 pseudo - - - - 20121222 -9606 101060037 LOC101060037 - - - 21 - uncharacterized LOC101060037 protein-coding - - - - 20121222 -9606 101060038 LOC101060038 - - - 12 - uncharacterized LOC101060038 miscRNA - - - - 20121222 -9606 101060039 LOC101060039 - - - 2 - heterogeneous nuclear ribonucleoprotein A1-like pseudo - - - - 20121209 -9606 101060040 LOC101060040 - - - 13 - coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like pseudo - - - - 20121209 -9606 101060041 LOC101060041 - - - 21 - uncharacterized LOC101060041 protein-coding - - - - 20121222 -9606 101060042 LOC101060042 - - - X - G antigen family D member 3-like pseudo - - - - 20121209 -9606 101060043 LOC101060043 - - - 5 - sulfiredoxin 1 pseudogene pseudo - - - - 20121230 -9606 101060044 LOC101060044 - - - 15 - cytochrome b5 type B-like pseudo - - - - 20121209 -9606 101060045 LOC101060045 - - - 21 - poly(rC)-binding protein 2-like pseudo - - - - 20121209 -9606 101060046 LOC101060046 - - - X - G antigen family D member 5-like pseudo - - - - 20121209 -9606 101060047 LOC101060047 - - - 12 - uncharacterized LOC101060047 protein-coding - - - - 20121222 -9606 101060048 LOC101060048 - - - 16 - uncharacterized LOC101060048 pseudo - - - - 20121209 -9606 101060049 LOC101060049 - - - X - ornithine aminotransferase, mitochondrial-like pseudo - - - - 20121209 -9606 101060050 LOC101060050 - - - 20 - uncharacterized LOC101060050 pseudo - - - - 20121209 -9606 101060051 LOC101060051 - - - 2 - uncharacterized LOC101060051 pseudo - - - - 20121209 -9606 101060052 LOC101060052 - - - 22 - zinc transporter ZIP1-like pseudo - - - - 20121209 -9606 101060053 LOC101060053 - - - 5 - S-phase kinase-associated protein 1-like pseudo - - - - 20121209 -9606 101060054 LOC101060054 - - - X - 40S ribosomal protein S24-like pseudo - - - - 20121209 -9606 101060055 LOC101060055 - - - 22 - putative uncharacterized protein FLJ38264-like pseudo - - - - 20121209 -9606 101060056 LOC101060056 - - - X - mpv17-like protein 2-like pseudo - - - - 20121209 -9606 101060057 LOC101060057 - - - 5 - phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like pseudo - - - - 20121209 -9606 101060058 LOC101060058 - - - 12 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121209 -9606 101060059 LOC101060059 - - - 5 - uncharacterized LOC101060059 pseudo - - - - 20121222 -9606 101060060 LOC101060060 - - - 12 - chitobiosyldiphosphodolichol beta-mannosyltransferase-like pseudo - - - - 20121209 -9606 101060061 LOC101060061 - - - 16 - uncharacterized LOC101060061 pseudo - - - - 20121209 -9606 101060062 LOC101060062 - - - 16 - uncharacterized LOC101060062 miscRNA - - - - 20121222 -9606 101060063 LOC101060063 - - - X - protein FAM136A-like pseudo - - - - 20121209 -9606 101060064 LOC101060064 - - - 12 - Fanconi anemia-associated protein of 24 kDa-like pseudo - - - - 20121209 -9606 101060065 LOC101060065 - - - 8 - uncharacterized LOC101060065 pseudo - - - - 20121209 -9606 101060066 LOC101060066 - - - 5 - uncharacterized LOC101060066 pseudo - - - - 20121209 -9606 101060067 LOC101060067 - - - 5 - 40S ribosomal protein S3-like pseudo - - - - 20121209 -9606 101060068 LOC101060068 - - - 2 - 40S ribosomal protein S21-like pseudo - - - - 20121209 -9606 101060069 LOC101060069 - - - 3 - uncharacterized LOC101060069 miscRNA - - - - 20121222 -9606 101060070 LOC101060070 - - - X - poly(A) polymerase alpha-like pseudo - - - - 20121209 -9606 101060071 LOC101060071 - - - 12 - uncharacterized LOC101060071 pseudo - - - - 20121209 -9606 101060072 LOC101060072 - - - 8 - uncharacterized LOC101060072 pseudo - - - - 20121209 -9606 101060073 LOC101060073 - - - 16 - uncharacterized LOC101060073 pseudo - - - - 20121209 -9606 101060074 LOC101060074 - - - 3 - uncharacterized LOC101060074 pseudo - - - - 20121209 -9606 101060075 LOC101060075 - - - 8 - ubiquitin-conjugating enzyme E2 variant 1-like pseudo - - - - 20121209 -9606 101060076 LOC101060076 - - - 5 - 60S ribosomal protein L14-like pseudo - - - - 20121209 -9606 101060077 LOC101060077 - - - 11 - uncharacterized LOC101060077 pseudo - - - - 20121209 -9606 101060078 LOC101060078 - - - 16 - uncharacterized LOC101060078 other - - - - 20121209 -9606 101060079 LOC101060079 - - - 3 - uncharacterized LOC101060079 pseudo - - - - 20121222 -9606 101060080 LOC101060080 - - - 17 - uncharacterized LOC101060080 miscRNA - - - - 20121222 -9606 101060081 LOC101060081 - - - 7 - carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like pseudo - - - - 20121222 -9606 101060082 LOC101060082 - - - 1 - uncharacterized LOC101060082 miscRNA - - - - 20121222 -9606 101060083 LOC101060083 - - - 3 - uncharacterized LOC101060083 pseudo - - - - 20121209 -9606 101060084 LOC101060084 - - - 11 - uncharacterized LOC101060084 pseudo - - - - 20121209 -9606 101060085 LOC101060085 - - - 1 - uncharacterized LOC101060085 protein-coding - - - - 20121222 -9606 101060086 LOC101060086 - - - 13 - cell cycle exit and neuronal differentiation protein 1-like pseudo - - - - 20121209 -9606 101060087 LOC101060087 - - - 3 - uncharacterized LOC101060087 pseudo - - - - 20121209 -9606 101060088 LOC101060088 - - - 12 - uncharacterized LOC101060088 pseudo - - - - 20121209 -9606 101060089 LOC101060089 - - - 11 - cleavage and polyadenylation specificity factor subunit 5-like pseudo - - - - 20121209 -9606 101060090 LOC101060090 - - - 10 - uncharacterized LOC101060090 pseudo - - - - 20121209 -9606 101060091 LOC101060091 - - - 2 - uncharacterized LOC101060091 protein-coding - - - - 20121222 -9606 101060092 LOC101060092 - - Ensembl:ENSG00000183748|Vega:OTTHUMG00000017754 10 - macrophage mannose receptor 1-like protein-coding - - - - 20121222 -9606 101060093 LOC101060093 - - - 9 - uncharacterized LOC101060093 pseudo - - - - 20121209 -9606 101060094 LOC101060094 - - - 12 - uncharacterized LOC101060094 pseudo - - - - 20121209 -9606 101060095 LOC101060095 - - - 11 - E3 ubiquitin-protein ligase RNF181-like pseudo - - - - 20121209 -9606 101060096 LOC101060096 - - - 1 - uncharacterized LOC101060096 pseudo - - - - 20121209 -9606 101060097 LOC101060097 - - - 16 - uncharacterized LOC101060097 pseudo - - - - 20121209 -9606 101060098 LOC101060098 - - - 16 - deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like pseudo - - - - 20121209 -9606 101060099 LOC101060099 - - - 9 - CST complex subunit TEN1-like pseudo - - - - 20121209 -9606 101060100 LOC101060100 - - - 1 - uncharacterized LOC101060100 pseudo - - - - 20121209 -9606 101060101 LOC101060101 - - Ensembl:ENSG00000184040|Vega:OTTHUMG00000017755 10 - transmembrane protein 236-like protein-coding - - - - 20121222 -9606 101060102 LOC101060102 - - - 18 - mitochondrial import receptor subunit TOM20 homolog pseudo - - - - 20121209 -9606 101060103 LOC101060103 - - - 2 - uncharacterized LOC101060103 miscRNA - - - - 20121222 -9606 101060104 LOC101060104 - - - 16 - uncharacterized LOC101060104 pseudo - - - - 20121209 -9606 101060105 LOC101060105 - - - 2 - protein FAM183A-like pseudo - - - - 20121209 -9606 101060106 LOC101060106 - - - 17 - putative uncharacterized protein FLJ43826-like pseudo - - - - 20121209 -9606 101060107 ARL5B-AS1 - - HGNC:44882 10 - ARL5B antisense RNA 1 miscRNA ARL5B-AS1 ARL5B antisense RNA 1 O - 20121222 -9606 101060108 LOC101060108 - - - 18 - uncharacterized LOC101060108 pseudo - - - - 20121209 -9606 101060109 LOC101060109 - - - 16 - uncharacterized LOC101060109 pseudo - - - - 20121209 -9606 101060110 LOC101060110 - - - 13 - uncharacterized LOC101060110 pseudo - - - - 20121209 -9606 101060111 LUZP4P1 - - HGNC:44904 10 - leucine zipper protein 4 pseudogene 1 pseudo LUZP4P1 leucine zipper protein 4 pseudogene 1 O - 20121227 -9606 101060112 LOC101060112 - - - 17 - ras-related protein O-Krev-like pseudo - - - - 20121209 -9606 101060113 LOC101060113 - - - X - proteasome maturation protein-like pseudo - - - - 20121209 -9606 101060114 LOC101060114 - - - 10 - uncharacterized LOC101060114 pseudo - - - - 20121209 -9606 101060115 LOC101060115 - - - 15 - putative transmembrane protein ENSP00000320207-like protein-coding - - - - 20121222 -9606 101060116 LOC101060116 - - - 7 - uncharacterized LOC101060116 pseudo - - - - 20121209 -9606 101060117 LOC101060117 - - - 14 - uncharacterized LOC101060117 protein-coding - - - - 20121222 -9606 101060118 LOC101060118 - - - 15 - uncharacterized LOC101060118 pseudo - - - - 20121209 -9606 101060119 LOC101060119 - - - 17 - RING-box protein 2-like pseudo - - - - 20121209 -9606 101060120 LOC101060120 - - - 2 - uncharacterized LOC101060120 pseudo - - - - 20121209 -9606 101060121 LOC101060121 - - - 5 - uncharacterized LOC101060121 pseudo - - - - 20121209 -9606 101060122 LOC101060122 - - - 14 - uncharacterized LOC101060122 pseudo - - - - 20121209 -9606 101060123 LOC101060123 - - - 9 - uncharacterized LOC101060123 pseudo - - - - 20121209 -9606 101060124 LOC101060124 - - - 16 - uncharacterized LOC101060124 pseudo - - - - 20121209 -9606 101060125 LOC101060125 - - - 17 - mitochondrial import receptor subunit TOM20 homolog pseudo - - - - 20121209 -9606 101060126 LOC101060126 - - - 1 - uncharacterized LOC101060126 pseudo - - - - 20121209 -9606 101060127 LOC101060127 - - - 5 - 60S acidic ribosomal protein P1-like pseudo - - - - 20121209 -9606 101060128 LOC101060128 - - - 7 - putative uncharacterized protein encoded by LINC00174-like protein-coding - - - - 20121222 -9606 101060129 LOC101060129 - - - 16 - uncharacterized LOC101060129 pseudo - - - - 20121222 -9606 101060130 LOC101060130 - - - 15 - Ig heavy chain V-I region V35-like other - - - - 20121209 -9606 101060131 LOC101060131 - - - 13 - uncharacterized LOC101060131 pseudo - - - - 20121209 -9606 101060132 LOC101060132 - - - 16 - uncharacterized LOC101060132 pseudo - - - - 20121209 -9606 101060133 LOC101060133 - - - 7 - myosin regulatory light chain 10-like protein-coding - - - - 20121222 -9606 101060134 LOC101060134 - - - 7 - gem-associated protein 7-like pseudo - - - - 20121209 -9606 101060135 LOC101060135 - - - 5 - uncharacterized LOC101060135 pseudo - - - - 20121209 -9606 101060136 LOC101060136 - - - Y - BCL-6 corepressor-like protein-coding - - - - 20121222 -9606 101060137 LOC101060137 - - - 16 - uncharacterized LOC101060137 pseudo - - - - 20121209 -9606 101060138 LOC101060138 - - - 7 - zinc finger protein 316-like protein-coding - - - - 20121222 -9606 101060139 LOC101060139 - - - 7 - uncharacterized LOC101060139 pseudo - - - - 20121222 -9606 101060140 LOC101060140 - - - Y - testis-specific Y-encoded protein 2-like protein-coding - - - - 20121222 -9606 101060141 LOC101060141 - - - 3 - uncharacterized LOC101060141 miscRNA - - - - 20121222 -9606 101060142 LOC101060142 - - - 2 - uncharacterized LOC101060142 miscRNA - - - - 20121222 -9606 101060143 LOC101060143 - - - 2 - uncharacterized LOC101060143 pseudo - - - - 20121209 -9606 101060144 LOC101060144 - - - 1 - mediator of RNA polymerase II transcription subunit 28-like pseudo - - - - 20121209 -9606 101060145 LOC101060145 - - - 2|Un - gamma-glutamyltransferase light chain 2-like pseudo - - - - 20121209 -9606 101060146 LOC101060146 - - - X - charged multivesicular body protein 1b-2-like pseudo - - - - 20121209 -9606 101060147 LOC101060147 - - - 7 - uncharacterized LOC101060147 miscRNA - - - - 20121222 -9606 101060148 LOC101060148 - - - 11 - uncharacterized LOC101060148 miscRNA - - - - 20121222 -9606 101060149 LOC101060149 - - - 16 - 40S ribosomal protein S24-like pseudo - - - - 20121209 -9606 101060150 LOC101060150 - - - 8 - uncharacterized LOC101060150 pseudo - - - - 20121209 -9606 101060151 LOC101060151 - - - 4 - arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1-like pseudo - - - - 20121209 -9606 101060152 LOC101060152 - - - X - nck-associated protein 1-like pseudo - - - - 20121209 -9606 101060153 LOC101060153 - - - 8 - uncharacterized LOC101060153 miscRNA - - - - 20121222 -9606 101060154 LOC101060154 - - - 5 - glycine cleavage system H protein, mitochondrial-like pseudo - - - - 20121209 -9606 101060155 LOC101060155 - - - 10 - uncharacterized LOC101060155 protein-coding - - - - 20121222 -9606 101060156 LOC101060156 - - - 1 - 40S ribosomal protein S27-like pseudo - - - - 20121209 -9606 101060157 LOC101060157 - - - Un - uncharacterized LOC101060157 pseudo - - - - 20121209 -9606 101060158 LOC101060158 - - - 4 - diamine acetyltransferase 1-like pseudo - - - - 20121209 -9606 101060159 LOC101060159 - - - 3 - uncharacterized LOC101060159 pseudo - - - - 20121209 -9606 101060160 DDTP1 - - HGNC:44546 3 - D-dopachrome tautomerase pseudogene 1 protein-coding DDTP1 D-dopachrome tautomerase pseudogene 1 O D-dopachrome decarboxylase-like 20121222 -9606 101060161 LOC101060161 - - - 7 - putative uncharacterized protein FLJ44672-like protein-coding - - - - 20121222 -9606 101060162 LOC101060162 - - - 4 - UDP-glucuronosyltransferase 2A1-like pseudo - - - - 20121209 -9606 101060163 LOC101060163 RP11-49L2.2 - - 10 10p12.33 MAM and LDL-receptor class A domain-containing protein C10orf112-like protein-coding - - - - 20121230 -9606 101060164 LOC101060164 - - - 1 - secretory carrier-associated membrane protein 1-like pseudo - - - - 20121209 -9606 101060165 LOC101060165 - - - Un - uncharacterized LOC101060165 protein-coding - - - - 20121222 -9606 101060166 LOC101060166 - - Ensembl:ENSG00000205147 19 - putative uncharacterized protein UNQ9165/PRO28630-like protein-coding - - - - 20121222 -9606 101060167 LOC101060167 - - - X - uncharacterized LOC101060167 protein-coding - - - - 20121222 -9606 101060168 LOC101060168 - - - 16 - Ig heavy chain V-I region V35-like other - - - - 20121209 -9606 101060169 LOC101060169 - - - 2 - uncharacterized LOC101060169 pseudo - - - - 20121209 -9606 101060170 LOC101060170 - - - 1 - uncharacterized LOC101060170 pseudo - - - - 20121209 -9606 101060171 ARMC4P1 - - HGNC:44937 10 - armadillo repeat containing 4 pseudogene 1 protein-coding ARMC4P1 armadillo repeat containing 4 pseudogene 1 O - 20121227 -9606 101060172 LOC101060172 - - - 1 - uncharacterized LOC101060172 pseudo - - - - 20121209 -9606 101060173 LOC101060173 - - - 16 - uncharacterized LOC101060173 pseudo - - - - 20121209 -9606 101060174 LOC101060174 - - - 7 - uncharacterized LOC101060174 pseudo - - - - 20121209 -9606 101060175 LOC101060175 - - Ensembl:ENSG00000148357|Vega:OTTHUMG00000140096 9 - hemicentin-2-like protein-coding - - - - 20121222 -9606 101060176 TPRKBP1 - - HGNC:44943 10 - TP53RK binding protein pseudogene 1 pseudo TPRKBP1 TP53RK binding protein pseudogene 1 O - 20121227 -9606 101060177 LOC101060177 - - - 19 - zinc finger protein 816-like pseudo - - - - 20121209 -9606 101060178 LOC101060178 - - - 7 - uncharacterized LOC101060178 miscRNA - - - - 20121222 -9606 101060179 LOC101060179 - - - 11 - uncharacterized LOC101060179 protein-coding - - - - 20121222 -9606 101060180 LOC101060180 - - - 2 - uncharacterized LOC101060180 pseudo - - - - 20121209 -9606 101060181 LOC101060181 - - Ensembl:ENSG00000197857 19 - zinc finger protein ZnFP12-like protein-coding - - - - 20121222 -9606 101060182 LOC101060182 - - - 7 - uncharacterized LOC101060182 pseudo - - - - 20121209 -9606 101060183 LOC101060183 - - - 7 - putative uncharacterized protein encoded by LINC00174-like protein-coding - - - - 20121222 -9606 101060184 GOLGA2P6 - - HGNC:44948 10 - golgin A2 pseudogene 6 pseudo GOLGA2P6 golgin A2 pseudogene 6 O - 20121227 -9606 101060185 LOC101060185 - - - 7 - uncharacterized LOC101060185 pseudo - - - - 20121209 -9606 101060186 LOC101060186 - - - 6 - uncharacterized LOC101060186 pseudo - - - - 20121209 -9606 101060187 LOC101060187 - - - 19 - putative uncharacterized protein FLJ25328-like pseudo - - - - 20121222 -9606 101060188 LOC101060188 - - - 7 - uncharacterized LOC101060188 pseudo - - - - 20121209 -9606 101060189 LOC101060189 - - - 16 - NEDD8-conjugating enzyme UBE2F-like pseudo - - - - 20121209 -9606 101060190 LOC101060190 - - - 2 - uncharacterized LOC101060190 pseudo - - - - 20121209 -9606 101060191 LOC101060191 - - - 8 - E3 ubiquitin-protein ligase RING2-like pseudo - - - - 20121209 -9606 101060192 LOC101060192 - - - 19 - BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like pseudo - - - - 20121209 -9606 101060193 LOC101060193 - - Ensembl:ENSG00000185751|Vega:OTTHUMG00000021563 X - G antigen family D member 3-like protein-coding - - - - 20121222 -9606 101060194 LOC101060194 - - - 3 - p53 apoptosis effector related to PMP-22-like pseudo - - - - 20121209 -9606 101060195 LOC101060195 - - - 3 - rRNA-processing protein FCF1 homolog pseudo - - - - 20121222 -9606 101060196 LOC101060196 - - - 12 - NANOG neighbor homeobox-like pseudo - - - - 20121209 -9606 101060197 LOC101060197 - - - 7 - uncharacterized LOC101060197 pseudo - - - - 20121209 -9606 101060198 LOC101060198 - - - 2 - MARVEL domain-containing protein 1-like protein-coding - - - MAL-like protein-like 20121222 -9606 101060199 LOC101060199 - - - X - acyl-coenzyme A synthetase ACSM6, mitochondrial-like pseudo - - - - 20121209 -9606 101060200 LOC101060200 - - Ensembl:ENSG00000214029|Vega:OTTHUMG00000167943 12 - zinc finger protein 891-like protein-coding - - - - 20121222 -9606 101060201 LOC101060201 - - - 17 - UPF0450 protein C17orf58-like pseudo - - - - 20121102 -9606 101060202 LOC101060202 - - - 1 - neuroblastoma breakpoint family member 20-like protein-coding - - - - 20121222 -9606 101060203 LOC101060203 - - - 7 - putative speedy protein E8-like protein-coding - - - - 20121222 -9606 101060204 LOC101060204 - - - 7 - postmeiotic segregation increased 4-like protein-like protein-coding - - - - 20121222 -9606 101060205 LOC101060205 - - - 7 - postmeiotic segregation increased 4-like protein-like protein-coding - - - - 20121222 -9606 101060206 LOC101060206 - - - 3 - transcription termination factor, mitochondrial-like pseudo - - - - 20121102 -9606 101060207 LOC101060207 - - - 1 - uncharacterized LOC101060207 pseudo - - - - 20121102 -9606 101060208 LOC101060208 - - - X - cancer/testis antigen family 45 member A3-like protein-coding - - - - 20121222 -9606 101060209 LOC101060209 - - - 1 - uncharacterized LOC101060209 pseudo - - - - 20121102 -9606 101060210 LOC101060210 - - - X - cancer/testis antigen family 45 member A2-like protein-coding - - - - 20121222 -9606 101060211 LOC101060211 - - - X - cancer/testis antigen family 45 member A3-like protein-coding - - - - 20121222 -9606 101060212 LOC101060212 - - - 17 - uncharacterized LOC101060212 miscRNA - - - - 20121222 -9606 101060213 LOC101060213 - - - 1 - uncharacterized LOC101060213 pseudo - - - - 20121102 -9606 101060214 LOC101060214 - - - 17 - uncharacterized LOC101060214 pseudo - - - - 20121102 -9606 101060215 LOC101060215 - - - 1 - uncharacterized LOC101060215 protein-coding - - - - 20121222 -9606 101060216 LOC101060216 - - - 17 - putative uncharacterized protein FLJ46235-like pseudo - - - - 20121102 -9606 101060217 LOC101060217 - - - 1 - uncharacterized LOC101060217 pseudo - - - - 20121102 -9606 101060218 LOC101060218 - - - 17 - uncharacterized LOC101060218 pseudo - - - - 20121102 -9606 101060219 LOC101060219 - - - 1 - uncharacterized LOC101060219 pseudo - - - - 20121102 -9606 101060220 LOC101060220 - - - 17 - UPF0450 protein C17orf58-like pseudo - - - - 20121102 -9606 101060221 LOC101060221 - - - 1 - vesicle-trafficking protein SEC22b-like pseudo - - - - 20121102 -9606 101060222 LOC101060222 - - - 1 - uncharacterized LOC101060222 pseudo - - - - 20121102 -9606 101060223 LOC101060223 - - - 1 - uncharacterized LOC101060223 pseudo - - - - 20121102 -9606 101060224 LOC101060224 - - - 11 - uncharacterized LOC101060224 pseudo - - - - 20121102 -9606 101060225 LOC101060225 - - - 1 - profilin-1-like pseudo - - - - 20121102 -9606 101060226 LOC101060226 - - - 1 - uncharacterized LOC101060226 protein-coding - - - - 20121222 -9606 101060227 LOC101060227 - - - 1 - uncharacterized LOC101060227 pseudo - - - - 20121102 -9606 101060228 LOC101060228 - - - 19 - killer cell immunoglobulin-like receptor 3DS1-like pseudo - - - - 20121222 -9606 101060229 LOC101060229 - - - 19 - zinc finger protein 486-like protein-coding - - - - 20121222 -9606 101060230 LOC101060230 - - - X - melanoma-associated antigen 12-like protein-coding - - - - 20121222 -9606 101060231 LOC101060231 - - - X - chondrosarcoma-associated gene 2/3 protein-like protein-coding - - - - 20121222 -9606 101060232 LOC101060232 - - - 12 - taste receptor type 2 member 64-like pseudo - - - - 20121102 -9606 101060233 LOC101060233 - - - X - medium-wave-sensitive opsin 1-like protein-coding - - - - 20121222 -9606 101060234 LOC101060234 - - - X - testis-specific protein TEX28-like protein-coding - - - - 20121222 -9606 101060235 LOC101060235 - - - X - thymosin beta-15B-like protein-coding - - - - 20121222 -9606 101060236 LOC101060236 - - - X - developmental pluripotency-associated protein 3-like protein-coding - - - - 20121222 -9606 101060237 LOC101060237 - - - 1 - uncharacterized LOC101060237 miscRNA - - - - 20121222 -9606 101060238 LOC101060238 - - - 1 - neuroblastoma breakpoint family member 14-like protein-coding - - - - 20121222 -9606 101060239 LOC101060239 - - - 7 - uncharacterized LOC101060239 pseudo - - - - 20121102 -9606 101060240 LOC101060240 - - - 9 - uncharacterized LOC101060240 pseudo - - - - 20121102 -9606 101060241 LOC101060241 - - - 1 - prostaglandin reductase 1-like pseudo - - - - 20121102 -9606 101060242 LOC101060242 - - - 1 - uncharacterized LOC101060242 protein-coding - - - - 20121222 -9606 101060243 LOC101060243 - - - 15 - ribosome biogenesis protein BMS1 homolog pseudo - - - - 20121102 -9606 101060244 LOC101060244 - - - 5 - uncharacterized LOC101060244 pseudo - - - - 20121222 -9606 101060245 LOC101060245 - - - 9 - protein FAM27E2-like pseudo - - - - 20121102 -9606 101060246 LOC101060246 - - - 6 - putative uncharacterized protein KIF25-AS1-like protein-coding - - - - 20121222 -9606 101060247 LOC101060247 - - - 1 - Golgi pH regulator B-like protein-coding - - - - 20121222 -9606 101060248 LOC101060248 - - - 1 - uncharacterized LOC101060248 pseudo - - - - 20121102 -9606 101060249 LOC101060249 - - - 7 - uncharacterized LOC101060249 pseudo - - - - 20121102 -9606 101060250 LOC101060250 - - - 22 - uncharacterized LOC101060250 pseudo - - - - 20121102 -9606 101060251 LOC101060251 - - - 9 - protein FAM27D1-like pseudo - - - - 20121102 -9606 101060252 LOC101060252 - - - 16 - bolA-like protein 2-like protein-coding - - - - 20121222 -9606 101060253 LOC101060253 - - - 16 - nuclear pore complex-interacting protein-like 2-like protein-coding - - - - 20121222 -9606 101060254 LOC101060254 - - - 1 - myomegalin-like protein-coding - - - - 20121222 -9606 101060255 LOC101060255 - - - 2 - uncharacterized LOC101060255 pseudo - - - - 20121102 -9606 101060256 LOC101060256 - - - 11 - tripartite motif-containing protein 49-like protein 1-like pseudo - - - - 20121102 -9606 101060257 LOC101060257 - - - 16 - uncharacterized LOC101060257 protein-coding - - - - 20121222 -9606 101060258 LOC101060258 - - - 22 - uncharacterized LOC101060258 pseudo - - - - 20121102 -9606 101060259 LOC101060259 - - - 9 - protein FAM27D1-like protein-coding - - - - 20121222 -9606 101060260 LOC101060260 - - - 1 - uncharacterized LOC101060260 miscRNA - - - - 20121222 -9606 101060261 LOC101060261 - - - 1 - uncharacterized LOC101060261 protein-coding - - - - 20121222 -9606 101060262 LOC101060262 - - - 11 - tripartite motif-containing protein 49-like protein 1-like protein-coding - - - - 20121222 -9606 101060263 LOC101060263 - - - 1 - vesicle-trafficking protein SEC22b-like pseudo - - - - 20121102 -9606 101060264 LOC101060264 - - - 6 - uncharacterized LOC101060264 miscRNA - - - - 20121222 -9606 101060265 LOC101060265 - - - 12 - ovostatin homolog 2-like protein-coding - - - - 20121222 -9606 101060266 LOC101060266 - - - 22 - uncharacterized LOC101060266 pseudo - - - - 20121102 -9606 101060267 LOC101060267 - - - 17 - c-C motif chemokine 3-like protein-coding - - - - 20121222 -9606 101060268 LOC101060268 - - - 1 - uncharacterized LOC101060268 miscRNA - - - - 20121222 -9606 101060269 LOC101060269 - - - 1 - uncharacterized LOC101060269 pseudo - - - - 20121102 -9606 101060270 LOC101060270 - - - 1 - uncharacterized LOC101060270 miscRNA - - - - 20121222 -9606 101060271 LOC101060271 - - - 17 - c-C motif chemokine 18-like protein-coding - - - - 20121222 -9606 101060272 LOC101060272 - - - 1 - ubiquitin-conjugating enzyme E2 D4-like pseudo - - - - 20121102 -9606 101060273 LOC101060273 - - - 1 - uncharacterized LOC101060273 pseudo - - - - 20121102 -9606 101060274 LOC101060274 - - - X - uncharacterized LOC101060274 pseudo - - - - 20121102 -9606 101060275 LOC101060275 - - - 16 - putative NPIP-like protein LOC100132247-like pseudo - - - - 20121222 -9606 101060276 LOC101060276 - - - 7 - uncharacterized LOC101060276 pseudo - - - - 20121222 -9606 101060277 LOC101060277 - - - 11 - glycine N-acyltransferase-like protein 1-like pseudo - - - - 20121222 -9606 101060278 LOC101060278 - - - 17 - c-C motif chemokine 4-like protein-coding - - - - 20121222 -9606 101060279 LOC101060279 - - - 1 - profilin-1-like pseudo - - - - 20121102 -9606 101060280 LOC101060280 - - - 7 - putative speedy protein E8-like pseudo - - - - 20121102 -9606 101060281 LOC101060281 - - - 1 - vesicular, overexpressed in cancer, prosurvival protein 1-like protein-coding - - - - 20121222 -9606 101060282 LOC101060282 - - - 6 - olfactory receptor 4F3/4F16/4F29-like pseudo - - - - 20121102 -9606 101060283 LOC101060283 - - - 7 - putative speedy protein E8-like pseudo - - - - 20121222 -9606 101060284 LOC101060284 - - - 7 - 60S ribosomal protein L31-like pseudo - - - - 20121102 -9606 101060285 LOC101060285 - - - 1 - peptidyl-prolyl cis-trans isomerase A-like 4A/B/C-like protein-coding - - - - 20121222 -9606 101060286 LOC101060286 - - - 11 - glycine N-acyltransferase-like protein 1-like pseudo - - - - 20121102 -9606 101060287 LOC101060287 - - - 17 - TBC1 domain family member 3G-like protein-coding - - - - 20121222 -9606 101060288 LOC101060288 - - - 1 - PRAME family member 9/15-like protein-coding - - - - 20121222 -9606 101060289 LOC101060289 - - - 1 - uncharacterized LOC101060289 pseudo - - - - 20121102 -9606 101060290 LOC101060290 - - - 1 - uncharacterized LOC101060290 pseudo - - - - 20121102 -9606 101060291 LOC101060291 - - - 1 - myomegalin-like protein-coding - - - - 20121222 -9606 101060292 LOC101060292 - - - 3 - uncharacterized LOC101060292 pseudo - - - - 20121102 -9606 101060293 LOC101060293 - - - 4 - putative heterogeneous nuclear ribonucleoprotein A1-like 3-like pseudo - - - - 20121102 -9606 101060294 LOC101060294 - - - 1 - PRAME family member 13-like pseudo - - - - 20121102 -9606 101060295 LOC101060295 - - - 1 - PRAME family member 9/15-like protein-coding - - - - 20121222 -9606 101060296 LOC101060296 - - - 16 - uncharacterized LOC101060296 pseudo - - - - 20121102 -9606 101060297 LOC101060297 - - - 9 - protein FAM27E3-like pseudo - - - - 20121102 -9606 101060298 LOC101060298 - - - 1 - neuroblastoma breakpoint family member 1-like protein-coding - - - - 20121222 -9606 101060299 LOC101060299 - - - 3 - uncharacterized LOC101060299 pseudo - - - - 20121102 -9606 101060300 LOC101060300 - - - 1 - uncharacterized LOC101060300 miscRNA - - - - 20121222 -9606 101060301 LOC101060301 - - - 1 - heterogeneous nuclear ribonucleoprotein C-like 1-like protein-coding - - - - 20121222 -9606 101060302 LOC101060302 - - - 1 - uncharacterized LOC101060302 pseudo - - - - 20121222 -9606 101060303 LOC101060303 - - - 17 - TBC1 domain family member 3G-like protein-coding - - - - 20121222 -9606 101060304 LOC101060304 - - - 22 - protein phosphatase 1 regulatory subunit 26-like pseudo - - - - 20121102 -9606 101060305 LOC101060305 - - - X - testis-specific protein TEX28-like protein-coding - - - - 20121222 -9606 101060306 LOC101060306 - - - 1 - profilin-1-like pseudo - - - - 20121102 -9606 101060307 LOC101060307 - - - 8 - protein FAM87B-like protein-coding - - - - 20121222 -9606 101060308 LOC101060308 - - - 1 - PRAME family member 9/15-like protein-coding - - - - 20121222 -9606 101060309 LOC101060309 - - - 1 - vesicle-trafficking protein SEC22b-like pseudo - - - - 20121102 -9606 101060310 LOC101060310 - - - 16 - protein capicua homolog pseudo - - - - 20121102 -9606 101060311 LOC101060311 - - - 12 - probable ATP-dependent RNA helicase DDX11-like protein-coding - - - - 20121222 -9606 101060312 LOC101060312 - - - 1 - vesicle-trafficking protein SEC22b-like pseudo - - - - 20121102 -9606 101060313 LOC101060313 - - - 22 - uncharacterized LOC101060313 pseudo - - - - 20121102 -9606 101060314 LOC101060314 - - - 4 - uncharacterized LOC101060314 miscRNA - - - - 20121222 -9606 101060315 LOC101060315 - - - 1 - neurogenic locus notch homolog protein 2-like pseudo - - - - 20121222 -9606 101060316 LOC101060316 - - - 7 - rho guanine nucleotide exchange factor 5-like protein-coding - - - - 20121222 -9606 101060317 LOC101060317 - - - X - paraneoplastic antigen-like protein 6B-like protein-coding - - - - 20121222 -9606 101060318 LOC101060318 - - - 1 - eukaryotic translation initiation factor 1A, X-chromosomal-like protein-coding - - - - 20121222 -9606 101060319 LOC101060319 - - - 11 - uncharacterized LOC101060319 miscRNA - - - - 20121222 -9606 101060320 LOC101060320 - - - 9 - suppressor of hairless protein homolog pseudo - - - - 20121102 -9606 101060321 LOC101060321 - - - 17 - TBC1 domain family member 3H-like protein-coding - - - - 20121222 -9606 101060322 LOC101060322 - - - X - telomeric repeat-binding factor 1-like pseudo - - - - 20121102 -9606 101060323 LOC101060323 - - - 9 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060324 LOC101060324 - - - 1 - espin-like pseudo - - - - 20121102 -9606 101060325 LOC101060325 - - - 1 - uncharacterized LOC101060325 pseudo - - - - 20121102 -9606 101060326 LOC101060326 - - - 10 - uncharacterized LOC101060326 pseudo - - - - 20121102 -9606 101060327 LOC101060327 - - - 1 - UPF0627 protein ENSP00000364708-like pseudo - - - - 20121102 -9606 101060328 LOC101060328 - - - X - uncharacterized LOC101060328 protein-coding - - - - 20121222 -9606 101060329 LOC101060329 - - - 1 - uncharacterized LOC101060329 pseudo - - - - 20121102 -9606 101060330 LOC101060330 - - - 1 - protein FAM91A1-like pseudo - - - - 20121102 -9606 101060331 LOC101060331 - - - 7 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060332 LOC101060332 - - - 1 - uncharacterized LOC101060332 pseudo - - - - 20121102 -9606 101060333 LOC101060333 - - - 6 - uncharacterized LOC101060333 protein-coding - - - - 20121222 -9606 101060334 LOC101060334 - - - 9 - uncharacterized LOC101060334 pseudo - - - - 20121102 -9606 101060335 LOC101060335 - - - 11 - protein RCC2-like protein-coding - - - - 20121222 -9606 101060336 LOC101060336 - - - 1 - uncharacterized LOC101060336 pseudo - - - - 20121102 -9606 101060337 LOC101060337 - - - 1 - putative uncharacterized protein FLJ35883-like pseudo - - - - 20121102 -9606 101060338 LOC101060338 - - - 7 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060339 LOC101060339 - - - 1 - rootletin-like pseudo - - - - 20121222 -9606 101060340 LOC101060340 - - - 1 - uncharacterized LOC101060340 pseudo - - - - 20121102 -9606 101060341 LOC101060341 - - - 7 - uncharacterized LOC101060341 protein-coding - - - - 20121222 -9606 101060342 LOC101060342 - - - 7 - uncharacterized LOC101060342 pseudo - - - - 20121102 -9606 101060343 LOC101060343 - - - Un - uncharacterized LOC101060343 pseudo - - - - 20121102 -9606 101060344 LOC101060344 - - - 1 - uncharacterized LOC101060344 protein-coding - - - - 20121222 -9606 101060345 LOC101060345 - - - 1 - ankyrin repeat domain-containing protein 35-like protein-coding - - - - 20121222 -9606 101060346 LOC101060346 - - - X - T-complex protein 11 homolog pseudo - - - - 20121102 -9606 101060347 LOC101060347 - - - 1 - hepatocyte growth factor-like protein-like pseudo - - - - 20121222 -9606 101060348 LOC101060348 - - - 17 - puromycin-sensitive aminopeptidase-like protein-like pseudo - - - - 20121222 -9606 101060349 LOC101060349 - - - 7 - uncharacterized LOC101060349 pseudo - - - - 20121102 -9606 101060350 LOC101060350 - - - 16 - ectonucleotide pyrophosphatase/phosphodiesterase family member 7-like protein-coding - - - - 20121222 -9606 101060351 LOC101060351 - - - 17 - TBC1 domain family member 3G-like protein-coding - - - - 20121222 -9606 101060352 LOC101060352 - - - Un - putative double homeobox protein 3-like pseudo - - - - 20121102 -9606 101060353 LOC101060353 - - - 1 - myomegalin-like protein-coding - - - - 20121222 -9606 101060354 LOC101060354 - - - 1 - uncharacterized LOC101060354 pseudo - - - - 20121102 -9606 101060355 LOC101060355 - - - 7 - putative uncharacterized protein FLJ46235-like pseudo - - - - 20121102 -9606 101060356 LOC101060356 - - - 7 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060357 LOC101060357 - - - 8 - uncharacterized LOC101060357 protein-coding - - - - 20121222 -9606 101060358 LOC101060358 - - - 11 - putative uncharacterized protein FLJ38264-like pseudo - - - - 20121102 -9606 101060359 LOC101060359 - - - 13 - uncharacterized LOC101060359 pseudo - - - - 20121102 -9606 101060360 LOC101060360 - - - 16 - apolipophorins-like protein-coding - - - - 20121222 -9606 101060361 LOC101060361 - - - Un - mucin-16-like protein-coding - - - - 20121222 -9606 101060362 LOC101060362 - - - 1 - neuroblastoma breakpoint family member 20-like protein-coding - - - - 20121222 -9606 101060363 LOC101060363 - - - 1 - peptidyl-prolyl cis-trans isomerase A-like protein-coding - - - - 20121222 -9606 101060364 LOC101060364 - - - 7 - putative uncharacterized protein FLJ46348-like pseudo - - - - 20121102 -9606 101060365 LOC101060365 - - - 7 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060366 LOC101060366 - - - 8 - uncharacterized LOC101060366 pseudo - - - - 20121102 -9606 101060367 LOC101060367 - - - 17 - TBC1 domain family member 3H-like protein-coding - - - - 20121222 -9606 101060368 LOC101060368 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121102 -9606 101060369 LOC101060369 - - - 3 - uncharacterized LOC101060369 pseudo - - - - 20121102 -9606 101060370 LOC101060370 - - - 5 - uncharacterized LOC101060370 pseudo - - - - 20121102 -9606 101060371 LOC101060371 - - - 8 - exonuclease GOR-like protein-coding - - - - 20121222 -9606 101060372 LOC101060372 - - - 1 - dimethylaniline monooxygenase [N-oxide-forming] 5-like protein-coding - - - - 20121222 -9606 101060373 LOC101060373 - - - 16 - nodal modulator 1-like protein-coding - - - - 20121222 -9606 101060374 LOC101060374 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060375 LOC101060375 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121222 -9606 101060376 LOC101060376 - - - 17 - TBC1 domain family member 3F-like protein-coding - - - - 20121222 -9606 101060377 LOC101060377 - - - 9 - uncharacterized LOC101060377 pseudo - - - - 20121102 -9606 101060378 LOC101060378 - - - 1 - uncharacterized LOC101060378 protein-coding - - - - 20121222 -9606 101060379 LOC101060379 - - - 1 - uncharacterized LOC101060379 pseudo - - - - 20121102 -9606 101060380 LOC101060380 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 101060381 LOC101060381 - - - 9 - uncharacterized LOC101060381 pseudo - - - - 20121102 -9606 101060382 LOC101060382 - - - 5 - putative POM121-like protein 1-like protein-coding - - - - 20121222 -9606 101060383 LOC101060383 - - - 1 - glycine cleavage system H protein, mitochondrial-like pseudo - - - - 20121102 -9606 101060384 LOC101060384 - - - 1 - UPF0627 protein ENSP00000341061/ENSP00000339743-like protein-coding - - - - 20121222 -9606 101060385 LOC101060385 - - - 2 - uncharacterized LOC101060385 miscRNA - - - - 20121222 -9606 101060386 LOC101060386 - - - 16 - serine/threonine-protein kinase SMG1-like protein-coding - - - - 20121222 -9606 101060387 LOC101060387 - - - 1 - uncharacterized LOC101060387 protein-coding - - - - 20121222 -9606 101060388 LOC101060388 - - - 1 - uncharacterized LOC101060388 pseudo - - - - 20121102 -9606 101060389 LOC101060389 - - - 17 - TBC1 domain family member 3F-like protein-coding - - - - 20121222 -9606 101060390 LOC101060390 - - - 16 - carbonic anhydrase 5A, mitochondrial-like pseudo - - - - 20121102 -9606 101060391 LOC101060391 - - - 2 - uncharacterized LOC101060391 protein-coding - - - - 20121222 -9606 101060392 LOC101060392 - - - 1 - uncharacterized LOC101060392 pseudo - - - - 20121102 -9606 101060393 LOC101060393 - - - 16 - nuclear pore complex-interacting protein-like 1-like protein-coding - - - - 20121222 -9606 101060394 LOC101060394 - - - 16 - putative NPIP-like protein LOC100132247-like protein-coding - - - - 20121222 -9606 101060395 LOC101060395 - - - 21 - uncharacterized LOC101060395 protein-coding - - - - 20121222 -9606 101060396 LOC101060396 - - - 3 - putative tubulin beta chain-like protein ENSP00000290377-like pseudo - - - - 20121102 -9606 101060397 LOC101060397 - - - 4 - uncharacterized LOC101060397 protein-coding - - - - 20121222 -9606 101060398 LOC101060398 - - - 1 - uncharacterized LOC101060398 miscRNA - - - - 20121222 -9606 101060399 LOC101060399 - - - 16 - cerebellar degeneration-related protein 2-like pseudo - - - - 20121222 -9606 101060400 LOC101060400 - - - 17 - uncharacterized LOC101060400 protein-coding - - - - 20121222 -9606 101060401 LOC101060401 - - - 18 - uncharacterized LOC101060401 pseudo - - - - 20121102 -9606 101060402 LOC101060402 - - - 1 - gap junction alpha-8 protein-like protein-coding - - - - 20121222 -9606 101060403 LOC101060403 - - - 17 - TBC1 domain family member 3G-like protein-coding - - - - 20121222 -9606 101060404 LOC101060404 - - - 1 - uncharacterized LOC101060404 protein-coding - - - - 20121222 -9606 101060405 LOC101060405 - - - 16 - RNA polymerase I-specific transcription initiation factor RRN3-like protein-coding - - - - 20121222 -9606 101060406 LOC101060406 - - - 17 - uncharacterized LOC101060406 protein-coding - - - - 20121222 -9606 101060407 LOC101060407 - - - 21 - uncharacterized LOC101060407 protein-coding - - - - 20121222 -9606 101060408 LOC101060408 - - - 11 - glutaredoxin-like protein C5orf63-like protein-coding - - - - 20121222 -9606 101060409 LOC101060409 - - - 1 - nucleoside diphosphate-linked moiety X motif 17-like protein-coding - - - - 20121222 -9606 101060410 LOC101060410 - - - 16 - serine/threonine-protein kinase SMG1-like protein-coding - - - - 20121222 -9606 101060411 LOC101060411 - - - Un - uncharacterized LOC101060411 protein-coding - - - - 20121222 -9606 101060412 LOC101060412 - - - 16 - nuclear pore complex-interacting protein-like protein-coding - - - - 20121222 -9606 101060413 LOC101060413 - - - 20 - protein capicua homolog pseudo - - - - 20121102 -9606 101060414 LOC101060414 - - - 9 - uncharacterized LOC101060414 miscRNA - - - - 20121222 -9606 101060415 LOC101060415 - - - 1 - peptidyl-prolyl cis-trans isomerase A-like 4A/B/C-like protein-coding - - - - 20121222 -9606 101060416 LOC101060416 - - - 16 - serine/threonine-protein kinase SMG1-like protein-coding - - - - 20121222 -9606 101060417 LOC101060417 - - - 19 - zinc finger protein 486-like protein-coding - - - - 20121222 -9606 101060418 LOC101060418 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060419 LOC101060419 - - - 1 - signal peptidase complex subunit 1-like pseudo - - - - 20121102 -9606 101060420 LOC101060420 - - - 15 - uncharacterized LOC101060420 pseudo - - - - 20121102 -9606 101060421 LOC101060421 - - - 17 - TBC1 domain family member 3F-like protein-coding - - - - 20121222 -9606 101060422 LOC101060422 - - - 1 - integrin alpha-10-like protein-coding - - - - 20121222 -9606 101060423 LOC101060423 - - - 2 - uncharacterized LOC101060423 protein-coding - - - - 20121222 -9606 101060424 LOC101060424 - - - 16 - otoancorin-like pseudo - - - - 20121222 -9606 101060425 LOC101060425 - - - 1 - UPF0627 protein ENSP00000358171-like protein-coding - - - - 20121222 -9606 101060426 LOC101060426 - - - 7 - protein FAM27D1-like pseudo - - - - 20121102 -9606 101060427 LOC101060427 - - - 13 - uncharacterized LOC101060427 protein-coding - - - - 20121222 -9606 101060428 LOC101060428 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060429 LOC101060429 - - - 16 - polycystin-1-like protein-coding - - - - 20121222 -9606 101060430 LOC101060430 - - - 21 - putative uncharacterized protein encoded by LINC00205-like protein-coding - - - - 20121222 -9606 101060431 LOC101060431 - - - 1 - E3 SUMO-protein ligase PIAS3-like protein-coding - - - - 20121222 -9606 101060432 LOC101060432 - - - 11 - uncharacterized LOC101060432 protein-coding - - - - 20121222 -9606 101060433 LOC101060433 - - - 16 - pyridoxal-dependent decarboxylase domain-containing protein 1-like protein-coding - - - - 20121222 -9606 101060434 LOC101060434 - - - 16 - NPIP-like protein LOC729602-like protein-coding - - - - 20121222 -9606 101060435 LOC101060435 - - - 17 - uncharacterized LOC101060435 pseudo - - - - 20121102 -9606 101060436 LOC101060436 - - - 10 - uncharacterized LOC101060436 pseudo - - - - 20121102 -9606 101060437 LOC101060437 - - - 15 - Ig heavy chain V-I region V35-like other - - - - 20121102 -9606 101060438 LOC101060438 - - - 16 - hsp90 co-chaperone Cdc37-like pseudo - - - - 20121102 -9606 101060439 LOC101060439 - - - 5 - ras-related protein Rap-1b-like protein-like protein-coding - - - - 20121222 -9606 101060440 LOC101060440 - - - 17 - TBC1 domain family member 3F-like protein-coding - - - - 20121222 -9606 101060441 LOC101060441 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060442 LOC101060442 - - - 1 - calcium-binding mitochondrial carrier protein SCaMC-1-like protein-coding - - - - 20121222 -9606 101060443 LOC101060443 - - - 12 - uncharacterized LOC101060443 miscRNA - - - - 20121222 -9606 101060444 LOC101060444 - - - 7 - uncharacterized LOC101060444 protein-coding - - - - 20121222 -9606 101060445 LOC101060445 - - - 9 - uncharacterized LOC101060445 protein-coding - - - - 20121222 -9606 101060446 LOC101060446 - - - 10 - neuropeptide Y receptor type 4-like protein-coding - - - - 20121222 -9606 101060447 LOC101060447 - - - 2 - uncharacterized LOC101060447 pseudo - - - - 20121102 -9606 101060448 LOC101060448 - - - 14 - putative neurofibromin 1-like protein 4/6-like protein-coding - - - - 20121222 -9606 101060449 LOC101060449 - - - 16 - putative NPIP-like protein LOC613037-like protein-coding - - - - 20121222 -9606 101060450 LOC101060450 - - - 5 - uncharacterized LOC101060450 pseudo - - - - 20121102 -9606 101060451 LOC101060451 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060452 LOC101060452 - - - 1 - uncharacterized LOC101060452 pseudo - - - - 20121102 -9606 101060453 LOC101060453 - - - 13 - fatty acid-binding protein, epidermal-like protein-coding - - - - 20121222 -9606 101060454 LOC101060454 - - - 14 - mediator of RNA polymerase II transcription subunit 15-like pseudo - - - - 20121102 -9606 101060455 LOC101060455 - - - 16 - serine/threonine-protein kinase SMG1-like pseudo - - - - 20121222 -9606 101060456 LOC101060456 - - - 1 - uncharacterized LOC101060456 pseudo - - - - 20121222 -9606 101060457 LOC101060457 - - - 18 - RNA polymerase II transcription factor SIII subunit A3-like protein-coding - - - - 20121222 -9606 101060458 LOC101060458 - - - 13 - peptidyl-prolyl cis-trans isomerase A-like protein-coding - - - - 20121222 -9606 101060459 LOC101060459 - - - 16 - uncharacterized LOC101060459 protein-coding - - - - 20121222 -9606 101060460 LOC101060460 - - - 1 - DNA-directed RNA polymerase III subunit RPC3-like protein-coding - - - - 20121222 -9606 101060461 LOC101060461 - - - 13 - uncharacterized LOC101060461 pseudo - - - - 20121102 -9606 101060462 LOC101060462 - - - 10 - uncharacterized LOC101060462 protein-coding - - - - 20121222 -9606 101060463 LOC101060463 - - - 1 - myomegalin-like pseudo - - - - 20121222 -9606 101060464 LOC101060464 - - - 18 - RNA polymerase II transcription factor SIII subunit A3-like protein-coding - - - - 20121222 -9606 101060465 LOC101060465 - - - 16 - putative NPIP-like protein LOC613037-like protein-coding - - - - 20121222 -9606 101060466 LOC101060466 - - - 22 - putative POM121-like protein 1-like pseudo - - - - 20121222 -9606 101060467 LOC101060467 - - - 10 - putative heterogeneous nuclear ribonucleoprotein A1-like 3-like pseudo - - - - 20121222 -9606 101060468 LOC101060468 - - - 18 - RNA polymerase II transcription factor SIII subunit A3-like protein-coding - - - - 20121222 -9606 101060469 LOC101060469 - - - 9 - uncharacterized LOC101060469 pseudo - - - - 20121102 -9606 101060470 LOC101060470 - - - 1 - otopetrin-1-like pseudo - - - - 20121102 -9606 101060471 LOC101060471 - - - 17 - puromycin-sensitive aminopeptidase-like protein-like protein-coding - - - - 20121222 -9606 101060472 LOC101060472 - - - 22 - breakpoint cluster region protein-like protein-coding - - - - 20121222 -9606 101060473 LOC101060473 - - - 18 - uncharacterized LOC101060473 miscRNA - - - - 20121222 -9606 101060474 LOC101060474 - - - 7 - putative uncharacterized protein FLJ46235-like protein-coding - - - - 20121222 -9606 101060475 LOC101060475 - - - 1 - D(1B) dopamine receptor-like pseudo - - - - 20121222 -9606 101060476 LOC101060476 - - - 7 - uncharacterized LOC101060476 pseudo - - - - 20121102 -9606 101060477 LOC101060477 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060478 LOC101060478 - - - 1 - E3 ubiquitin-protein ligase RNF115-like protein-coding - - - - 20121222 -9606 101060479 LOC101060479 - - - 16 - Ig heavy chain V-III region VH26-like other - - - - 20121102 -9606 101060480 LOC101060480 - - - 17 - putative uncharacterized protein FLJ46089-like protein-coding - - - - 20121222 -9606 101060481 LOC101060481 - - - 7 - putative uncharacterized protein FLJ46348-like pseudo - - - - 20121102 -9606 101060482 LOC101060482 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060483 LOC101060483 - - - 22 - uncharacterized LOC101060483 miscRNA - - - - 20121222 -9606 101060484 LOC101060484 - - - 19 - transmembrane protein 50B-like pseudo - - - - 20121102 -9606 101060485 LOC101060485 - - - 1 - uncharacterized LOC101060485 pseudo - - - - 20121102 -9606 101060486 LOC101060486 - - - 11 - 60S ribosomal protein L15-like pseudo - - - - 20121102 -9606 101060487 LOC101060487 - - - 1 - ankyrin repeat domain-containing protein 34A-like protein-coding - - - - 20121222 -9606 101060488 LOC101060488 - - - 14 - uncharacterized LOC101060488 protein-coding - - - - 20121222 -9606 101060489 LOC101060489 - - - 17 - TBC1 domain family member 3F-like protein-coding - - - - 20121222 -9606 101060490 LOC101060490 - - - 22 - mitochondrial import receptor subunit TOM40 homolog pseudo - - - - 20121102 -9606 101060491 LOC101060491 - - - 1 - 60S ribosomal protein L34-like pseudo - - - - 20121102 -9606 101060492 LOC101060492 - - - 8 - uncharacterized LOC101060492 pseudo - - - - 20121102 -9606 101060493 LOC101060493 - - - 9 - uncharacterized LOC101060493 miscRNA - - - - 20121222 -9606 101060494 LOC101060494 - - - 1 - uncharacterized LOC101060494 miscRNA - - - - 20121222 -9606 101060495 LOC101060495 - - - 6 - uncharacterized LOC101060495 pseudo - - - - 20121222 -9606 101060496 LOC101060496 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 101060497 LOC101060497 - - - 16 - uncharacterized LOC101060497 miscRNA - - - - 20121222 -9606 101060498 LOC101060498 - - - 4 - uncharacterized LOC101060498 protein-coding - - - - 20121222 -9606 101060499 LOC101060499 - - - 19 - leukocyte immunoglobulin-like receptor subfamily A member 6-like pseudo - - - - 20121102 -9606 101060500 LOC101060500 - - - 22 - ubiquitin carboxyl-terminal hydrolase 10-like pseudo - - - - 20121102 -9606 101060501 LOC101060501 - - - 9 - lupus La protein-like pseudo - - - - 20121102 -9606 101060502 LOC101060502 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060503 LOC101060503 - - - 1 - thioredoxin-interacting protein-like protein-coding - - - - 20121222 -9606 101060504 LOC101060504 - - - 5 - uncharacterized LOC101060504 pseudo - - - - 20121102 -9606 101060505 LOC101060505 - - - 16 - uncharacterized LOC101060505 pseudo - - - - 20121102 -9606 101060506 LOC101060506 - - - 17 - TBC1 domain family member 3G-like protein-coding - - - - 20121222 -9606 101060507 LOC101060507 - - - 7 - uncharacterized LOC101060507 pseudo - - - - 20121102 -9606 101060508 LOC101060508 - - - Un - hemicentin-2-like protein-coding - - - - 20121222 -9606 101060509 LOC101060509 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121102 -9606 101060510 LOC101060510 - - - 11 - 60S ribosomal protein L31-like pseudo - - - - 20121222 -9606 101060511 LOC101060511 - - - 1 - 5'-AMP-activated protein kinase subunit beta-2-like protein-coding - - - - 20121222 -9606 101060512 LOC101060512 - - - 16 - uncharacterized LOC101060512 pseudo - - - - 20121102 -9606 101060513 LOC101060513 - - - 4 - ankyrin repeat domain-containing protein 26-like pseudo - - - - 20121102 -9606 101060514 LOC101060514 - - - Un - dynein heavy chain 7, axonemal-like protein-coding - - - - 20121222 -9606 101060515 LOC101060515 - - - 1 - uncharacterized LOC101060515 pseudo - - - - 20121102 -9606 101060516 LOC101060516 - - - 5 - putative POM121-like protein 1-like protein-coding - - - - 20121222 -9606 101060517 LOC101060517 - - - 8 - uncharacterized LOC101060517 pseudo - - - - 20121102 -9606 101060518 LOC101060518 - - - 1 - peptidyl-prolyl cis-trans isomerase A-like 4A/B/C-like protein-coding - - - - 20121222 -9606 101060519 LOC101060519 - - - 5 - putative beta-glucuronidase-like protein FLJ75429-like protein-coding - - - - 20121222 -9606 101060520 LOC101060520 - - - 8 - peptidyl-prolyl cis-trans isomerase A-like pseudo - - - - 20121102 -9606 101060521 LOC101060521 - - - 16 - DNA-directed RNA polymerase III subunit RPC5-like protein-coding - - - - 20121222 -9606 101060522 LOC101060522 - - - 17 - puromycin-sensitive aminopeptidase-like protein-like protein-coding - - - - 20121222 -9606 101060523 LOC101060523 - - - 9 - GAS2-like protein 1-like pseudo - - - - 20121102 -9606 101060524 LOC101060524 - - - 1 - D(1B) dopamine receptor-like pseudo - - - - 20121222 -9606 101060525 LOC101060525 - - - 1 - hemojuvelin-like protein-coding - - - - 20121222 -9606 101060526 LOC101060526 - - - 13 - uncharacterized LOC101060526 miscRNA - - - - 20121222 -9606 101060527 LOC101060527 - - - 5 - baculoviral IAP repeat-containing protein 1-like protein-coding - - - - 20121222 -9606 101060528 LOC101060528 - - - X - uncharacterized LOC101060528 miscRNA - - - - 20121222 -9606 101060529 LOC101060529 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060530 LOC101060530 - - - 7 - uncharacterized LOC101060530 pseudo - - - - 20121102 -9606 101060531 LOC101060531 - - - 1 - neuroblastoma breakpoint family member 21-like protein-coding - - - - 20121222 -9606 101060532 LOC101060532 - - - 4 - coiled-coil domain-containing protein 29-like pseudo - - - - 20121102 -9606 101060533 LOC101060533 - - - X - uncharacterized LOC101060533 miscRNA - - - - 20121222 -9606 101060534 LOC101060534 - - - 5 - putative POM121-like protein 1-like protein-coding - - - - 20121222 -9606 101060535 LOC101060535 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060536 LOC101060536 - - - 1 - uncharacterized LOC101060536 miscRNA - - - - 20121222 -9606 101060537 LOC101060537 - - - 7 - uncharacterized LOC101060537 pseudo - - - - 20121102 -9606 101060538 LOC101060538 - - - 1 - otopetrin-1-like pseudo - - - - 20121102 -9606 101060539 LOC101060539 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121222 -9606 101060540 LOC101060540 - - - 8 - exonuclease GOR-like protein-coding - - - - 20121222 -9606 101060541 LOC101060541 - - - 1 - RNA-binding protein 8A-like protein-coding - - - - 20121222 -9606 101060542 LOC101060542 - - - 18 - uncharacterized LOC101060542 miscRNA - - - - 20121222 -9606 101060543 LOC101060543 - - - 1 - otopetrin-1-like pseudo - - - - 20121102 -9606 101060544 LOC101060544 - - - 17 - uncharacterized LOC101060544 protein-coding - - - - 20121222 -9606 101060545 LOC101060545 - - - 2 - ribose-5-phosphate isomerase-like protein-coding - - - - 20121222 -9606 101060546 LOC101060546 - - - 17 - uncharacterized LOC101060546 protein-coding - - - - 20121222 -9606 101060547 LOC101060547 - - - 1 - LIX1-like protein-like protein-coding - - - - 20121222 -9606 101060548 LOC101060548 - - - 13 - uncharacterized LOC101060548 miscRNA - - - - 20121222 -9606 101060549 LOC101060549 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121102 -9606 101060550 LOC101060550 - - - 1 - protein capicua homolog pseudo - - - - 20121102 -9606 101060551 LOC101060551 - - - 20 - uncharacterized LOC101060551 protein-coding - - - - 20121222 -9606 101060552 LOC101060552 - - - 11 - putative zinc finger protein 75C-like pseudo - - - - 20121102 -9606 101060553 LOC101060553 - - - 13 - uncharacterized LOC101060553 miscRNA - - - - 20121222 -9606 101060554 LOC101060554 - - - 2 - ankyrin repeat domain-containing protein 36C-like protein-coding - - - - 20121222 -9606 101060555 LOC101060555 - - - 1 - DNA-directed RNA polymerase III subunit RPC7-like protein-coding - - - - 20121222 -9606 101060556 LOC101060556 - - - 12 - filamin-B-like pseudo - - - - 20121102 -9606 101060557 LOC101060557 - - - 16 - von Willebrand factor A domain-containing protein 3A-like protein-coding - - - - 20121222 -9606 101060558 LOC101060558 - - - 5 - putative POM121-like protein 1-like pseudo - - - - 20121222 -9606 101060559 LOC101060559 - - - 7 - uncharacterized LOC101060559 pseudo - - - - 20121102 -9606 101060560 LOC101060560 - - - 9 - forkhead box protein D4-like 6-like protein-coding - - - - 20121222 -9606 101060561 LOC101060561 - - - 1 - protein disulfide-isomerase A3-like pseudo - - - - 20121222 -9606 101060562 LOC101060562 - - - 1 - uncharacterized LOC101060562 protein-coding - - - - 20121222 -9606 101060563 LOC101060563 - - - 15 - uncharacterized LOC101060563 protein-coding - - - - 20121222 -9606 101060564 LOC101060564 - - - 16 - nuclear pore complex-interacting protein-like 3-like pseudo - - - - 20121222 -9606 101060565 LOC101060565 - - - 13 - uncharacterized LOC101060565 protein-coding - - - - 20121222 -9606 101060566 LOC101060566 - - - 2 - Ig kappa chain V-I region Walker-like other - - - - 20121102 -9606 101060567 LOC101060567 - - - 1 - peroxisomal membrane protein 11B-like protein-coding - - - - 20121222 -9606 101060568 LOC101060568 - - - 1 - UPF0627 protein ENSP00000358171-like protein-coding - - - - 20121222 -9606 101060569 LOC101060569 - - - 15 - U3 small nucleolar ribonucleoprotein protein MPP10-like pseudo - - - - 20121222 -9606 101060570 LOC101060570 - - - 16 - eukaryotic elongation factor 2 kinase-like protein-coding - - - - 20121222 -9606 101060571 LOC101060571 - - - 3 - uncharacterized LOC101060571 protein-coding - - - - 20121222 -9606 101060572 LOC101060572 - - - 17 - putative calcium-sensing receptor-like 1-like pseudo - - - - 20121102 -9606 101060573 LOC101060573 - - - 9 - Ig kappa chain V-I region Walker-like other - - - - 20121102 -9606 101060574 LOC101060574 - - - Un - uncharacterized LOC101060574 miscRNA - - - - 20121222 -9606 101060575 LOC101060575 - - - 1 - Ig kappa chain V-I region Walker-like other - - - - 20121102 -9606 101060576 LOC101060576 - - - 16 - putative NPIP-like protein LOC100132247-like pseudo - - - - 20121222 -9606 101060577 LOC101060577 - - - 17 - ubiquitin carboxyl-terminal hydrolase 6-like pseudo - - - - 20121102 -9606 101060578 LOC101060578 - - - 9 - COBW domain-containing protein 5-like protein-coding - - - - 20121222 -9606 101060579 LOC101060579 - - - 1 - uncharacterized LOC101060579 miscRNA - - - - 20121222 -9606 101060580 LOC101060580 - - - 15 - uncharacterized LOC101060580 protein-coding - - - - 20121222 -9606 101060581 LOC101060581 - - - 10 - arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5-like protein-coding - - - - 20121222 -9606 101060582 LOC101060582 - - - 1 - myomegalin-like protein-coding - - - - 20121222 -9606 101060583 LOC101060583 - - - 2 - uncharacterized LOC101060583 pseudo - - - - 20121102 -9606 101060584 LOC101060584 - - - 16 - uncharacterized LOC101060584 pseudo - - - - 20121102 -9606 101060585 LOC101060585 - - - 9 - recombining binding protein suppressor of hairless-like pseudo - - - - 20121102 -9606 101060587 LOC101060587 - - - 15 - uncharacterized LOC101060587 pseudo - - - - 20121102 -9606 101060588 LOC101060588 - - - 15 - uncharacterized LOC101060588 protein-coding - - - - 20121222 -9606 101060589 LOC101060589 - - - 16 - serine/threonine-protein kinase SMG1-like protein-coding - - - - 20121222 -9606 101060590 LOC101060590 - - - 1 - uncharacterized LOC101060590 miscRNA - - - - 20121222 -9606 101060591 LOC101060591 - - - 9 - putative UPF0633 protein MGC21881-like protein-coding - - - - 20121222 -9606 101060592 LOC101060592 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060593 LOC101060593 - - - 1 - uncharacterized LOC101060593 pseudo - - - - 20121102 -9606 101060594 LOC101060594 - - - 1 - insulin-like growth factor 2 mRNA-binding protein 2-like pseudo - - - - 20121102 -9606 101060595 LOC101060595 - - - 1 - uncharacterized LOC101060595 miscRNA - - - - 20121222 -9606 101060596 LOC101060596 - - - 16 - serine/threonine-protein kinase SMG1-like pseudo - - - - 20121222 -9606 101060597 LOC101060597 - - - 7 - uncharacterized LOC101060597 pseudo - - - - 20121102 -9606 101060598 LOC101060598 - - - 2 - Ig kappa chain V-IV region-like other - - - - 20121102 -9606 101060599 LOC101060599 - - - 7 - postmeiotic segregation increased 4-like protein-like protein-coding - - - - 20121222 -9606 101060600 LOC101060600 - - - 10 - dual specificity protein phosphatase 8-like pseudo - - - - 20121102 -9606 101060601 LOC101060601 - - - 1 - chromodomain-helicase-DNA-binding protein 1-like protein-coding - - - - 20121222 -9606 101060602 LOC101060602 - - - 17 - multidrug and toxin extrusion protein 2-like pseudo - - - - 20121102 -9606 101060603 LOC101060603 - - - 11 - protein tyrosine phosphatase type IVA 1-like pseudo - - - - 20121102 -9606 101060604 LOC101060604 - - - 16 - putative L-type amino acid transporter 1-like protein IMAA-like protein-coding - - - - 20121222 -9606 101060605 LOC101060605 - - - 7 - postmeiotic segregation increased 4-like protein-like pseudo - - - - 20121222 -9606 101060606 LOC101060606 - - - 9 - glucoside xylosyltransferase 1-like pseudo - - - - 20121102 -9606 101060607 LOC101060607 - - - 17 - keratin, type I cytoskeletal 16-like pseudo - - - - 20121222 -9606 101060608 LOC101060608 - - - 1 - T-complex protein 1 subunit theta-like pseudo - - - - 20121102 -9606 101060609 LOC101060609 - - - 10 - uncharacterized LOC101060609 miscRNA - - - - 20121222 -9606 101060610 LOC101060610 - - - 16 - AP-3 complex subunit sigma-1-like pseudo - - - - 20121102 -9606 101060611 LOC101060611 - - - 17 - keratin, type I cytoskeletal 17-like pseudo - - - - 20121102 -9606 101060612 LOC101060612 - - - 11 - ankyrin repeat domain-containing protein 33B-like pseudo - - - - 20121102 -9606 101060613 LOC101060613 - - - 1 - gap junction alpha-5 protein-like protein-coding - - - - 20121222 -9606 101060614 LOC101060614 - - - 2 - MAL-like protein-like protein-coding - - - - 20121222 -9606 101060615 LOC101060615 - - - 14 - uncharacterized LOC101060615 protein-coding - - - - 20121222 -9606 101060616 LOC101060616 - - - 8 - uncharacterized LOC101060616 pseudo - - - - 20121102 -9606 101060617 LOC101060617 - - - 10 - putative uncharacterized protein C11orf81-like pseudo - - - - 20121102 -9606 101060618 LOC101060618 - - - 17 - uncharacterized LOC101060618 pseudo - - - - 20121102 -9606 101060619 LOC101060619 - - - 15 - uncharacterized LOC101060619 pseudo - - - - 20121102 -9606 101060620 LOC101060620 - - - 17 - c-Jun-amino-terminal kinase-interacting protein 1-like protein-coding - - - - 20121222 -9606 101060621 LOC101060621 - - - 8 - putative protein FAM90A8P-like protein-coding - - - - 20121222 -9606 101060622 LOC101060622 - - - 7 - uncharacterized LOC101060622 protein-coding - - - - 20121222 -9606 101060623 LOC101060623 - - - 1 - gonadotropin-releasing hormone II receptor-like pseudo - - - - 20121222 -9606 101060624 LOC101060624 - - - 16 - uncharacterized LOC101060624 miscRNA - - - - 20121222 -9606 101060625 LOC101060625 - - - 10 - uncharacterized LOC101060625 pseudo - - - - 20121222 -9606 101060626 LOC101060626 - - - 1 - F-box only protein 25-like protein-coding - - - - 20121222 -9606 101060627 LOC101060627 - - - 8 - uncharacterized LOC101060627 protein-coding - - - - 20121222 -9606 101060628 LOC101060628 - - - 7 - uncharacterized LOC101060628 protein-coding - - - - 20121222 -9606 101060629 LOC101060629 - - - 1 - CD160 antigen-like protein-coding - - - - 20121222 -9606 101060630 LOC101060630 - - - 17 - protein FAM182A-like pseudo - - - - 20121102 -9606 101060631 LOC101060631 - - - 10 - 60S ribosomal protein L19-like pseudo - - - - 20121102 -9606 101060632 LOC101060632 - - - 1 - coiled-coil domain-containing protein 29-like pseudo - - - - 20121222 -9606 101060633 LOC101060633 - - - 2 - Ig kappa chain V-I region HK102-like other - - - - 20121102 -9606 101060634 LOC101060634 - - - 16 - uncharacterized LOC101060634 miscRNA - - - - 20121222 -9606 101060635 LOC101060635 - - - 17 - UPF0450 protein C17orf58-like pseudo - - - - 20121102 -9606 101060636 LOC101060636 - - - 1 - Golgi pH regulator B-like protein-coding - - - - 20121222 -9606 101060637 LOC101060637 - - - 1 - nuclear ubiquitous casein and cyclin-dependent kinase substrate 1-like pseudo - - - - 20121102 -9606 101060638 LOC101060638 - - - 15 - 60S ribosomal protein L29-like pseudo - - - - 20121102 -9606 101060639 LOC101060639 - - - 13 - protocadherin-8-like pseudo - - - - 20121102 -9606 101060640 LOC101060640 - - - 11 - putative Fatty acid desaturase 2-like protein FADS2P1-like pseudo - - - - 20121102 -9606 101060641 LOC101060641 - - - 9 - putative uncharacterized protein UNQ6494/PRO21346-like protein-coding - - - - 20121222 -9606 101060642 LOC101060642 - - - 1 - lupus La protein-like pseudo - - - - 20121102 -9606 101060643 LOC101060643 - - - 1 - putative tubulin beta chain-like protein ENSP00000290377-like pseudo - - - - 20121102 -9606 101060644 LOC101060644 - - - 13 - TAR DNA-binding protein 43-like pseudo - - - - 20121102 -9606 101060645 LOC101060645 - - - 1 - uncharacterized LOC101060645 protein-coding - - - - 20121222 -9606 101060646 LOC101060646 - - - 1 - neuroblastoma breakpoint family member 1-like protein-coding - - - - 20121222 -9606 101060647 LOC101060647 - - - 2 - Ig kappa chain V-II region RPMI 6410-like other - - - - 20121102 -9606 101060648 LOC101060648 - - - 3 - proline-rich protein 3-like pseudo - - - - 20121102 -9606 101060649 LOC101060649 - - - 16 - uncharacterized LOC101060649 miscRNA - - - - 20121222 -9606 101060650 LOC101060650 - - - 4 - uncharacterized LOC101060650 miscRNA - - - - 20121222 -9606 101060651 LOC101060651 - - - Un - uncharacterized LOC101060651 protein-coding - - - - 20121222 -9606 101060652 LOC101060652 - - - 16 - uncharacterized LOC101060652 miscRNA - - - - 20121222 -9606 101060653 LOC101060653 - - - 1 - neuroblastoma breakpoint family member 5-like pseudo - - - - 20121102 -9606 101060654 LOC101060654 - - - 8 - uncharacterized LOC101060654 protein-coding - - - - 20121222 -9606 101060655 LOC101060655 - - - 1 - uncharacterized LOC101060655 pseudo - - - - 20121102 -9606 101060656 LOC101060656 - - - 1 - protein FAM72D-like protein-coding - - - - 20121222 -9606 101060657 LOC101060657 - - - 1 - uncharacterized LOC101060657 pseudo - - - - 20121222 -9606 101060658 LOC101060658 - - - 8 - uncharacterized LOC101060658 pseudo - - - - 20121102 -9606 101060659 LOC101060659 - - - 1 - uncharacterized LOC101060659 protein-coding - - - - 20121222 -9606 101060660 LOC101060660 - - - 1 - olfactory receptor 4F6-like protein-coding - - - - 20121222 -9606 101060661 LOC101060661 - - - 15 - uncharacterized LOC101060661 protein-coding - - - - 20121222 -9606 101060662 LOC101060662 - - - 8 - uncharacterized LOC101060662 protein-coding - - - - 20121222 -9606 101060663 LOC101060663 - - - 1 - uncharacterized LOC101060663 pseudo - - - - 20121102 -9606 101060664 LOC101060664 - - - 1 - uncharacterized LOC101060664 protein-coding - - - - 20121222 -9606 101060665 LOC101060665 - - - 4 - uncharacterized LOC101060665 pseudo - - - - 20121102 -9606 101060666 LOC101060666 - - - 1 - uncharacterized LOC101060666 miscRNA - - - - 20121222 -9606 101060667 LOC101060667 - - - 2 - uncharacterized LOC101060667 protein-coding - - - - 20121222 -9606 101060668 LOC101060668 - - - 15 - A disintegrin and metalloproteinase with thrombospondin motifs 7-like pseudo - - - - 20121102 -9606 101060669 LOC101060669 - - - 15 - disintegrin and metalloproteinase domain-containing protein 29-like pseudo - - - - 20121102 -9606 101060670 LOC101060670 - - - 11 - chitobiosyldiphosphodolichol beta-mannosyltransferase-like protein-coding - - - - 20121222 -9606 101060671 LOC101060671 - - - 8 - exonuclease GOR-like pseudo - - - - 20121102 -9606 101060672 LOC101060672 - - - 1 - neuroblastoma breakpoint family member 14-like protein-coding - - - - 20121222 -9606 101060673 LOC101060673 - - - 2 - uncharacterized LOC101060673 protein-coding - - - - 20121222 -9606 101060674 LOC101060674 - - - 8 - exonuclease GOR-like pseudo - - - - 20121102 -9606 101060675 LOC101060675 - - - 10 - poly(ADP-ribose) glycohydrolase-like protein-coding - - - - 20121222 -9606 101060676 LOC101060676 - - - 1 - uncharacterized LOC101060676 pseudo - - - - 20121222 -9606 101060677 LOC101060677 - - - 1 - uncharacterized LOC101060677 protein-coding - - - - 20121222 -9606 101060678 LOC101060678 - - - 11 - protein capicua homolog pseudo - - - - 20121102 -9606 101060679 LOC101060679 - - - 11 - uncharacterized LOC101060679 pseudo - - - - 20121102 -9606 101060680 LOC101060680 - - - 2 - uncharacterized LOC101060680 miscRNA - - - - 20121222 -9606 101060681 LOC101060681 - - - 6 - tenascin-X-like protein-coding - - - - 20121222 -9606 101060682 LOC101060682 - - - 22 - gamma-glutamyltranspeptidase 2-like protein-coding - - - - 20121222 -9606 101060683 LOC101060683 - - - 1 - neurogenic locus notch homolog protein 2-like protein-coding - - - - 20121222 -9606 101060684 LOC101060684 - - - 1 - neuroblastoma breakpoint family member 20-like protein-coding - - - - 20121222 -9606 101060685 LOC101060685 - - - 3 - uncharacterized LOC101060685 pseudo - - - - 20121102 -9606 101060687 LOC101060687 - - - 11 - uncharacterized LOC101060687 pseudo - - - - 20121102 -9606 101060688 LOC101060688 - - - 6 - uncharacterized LOC101060688 miscRNA - - - - 20121222 -9606 101060689 LOC101060689 - - - 7 - protein FAM115C-like protein-coding - - - - 20121222 -9606 101060690 LOC101060690 - - - 22 - uncharacterized LOC101060690 protein-coding - - - - 20121222 -9606 101060691 LOC101060691 - - - 10 - uncharacterized LOC101060691 protein-coding - - - - 20121222 -9606 101060692 LOC101060692 - - - 1 - neuroblastoma breakpoint family member 14-like protein-coding - - - - 20121222 -9606 101060693 LOC101060693 - - - 1 - uncharacterized LOC101060693 protein-coding - - - - 20121222 -9606 101060694 LOC101060694 - - - 15 - uncharacterized LOC101060694 pseudo - - - - 20121102 -9606 101060695 LOC101060695 - - - 7 - uncharacterized LOC101060695 pseudo - - - - 20121102 -9606 101060696 LOC101060696 - - - 7 - cutaneous T-cell lymphoma-associated antigen 4-like pseudo - - - - 20121222 -9606 101060697 LOC101060697 - - - 22 - uncharacterized LOC101060697 pseudo - - - - 20121222 -9606 101060698 LOC101060698 - - - 1 - uncharacterized LOC101060698 protein-coding - - - - 20121222 -9606 101060699 LOC101060699 - - - 1 - hydrocephalus-inducing protein homolog protein-coding - - - - 20121222 -9606 101060700 LOC101060700 - - - 1 - B-cell CLL/lymphoma 9 protein-like protein-coding - - - - 20121222 -9606 101060701 LOC101060701 - - - 1 - uncharacterized LOC101060701 pseudo - - - - 20121102 -9606 101060702 LOC101060702 - - - 7 - olfactory receptor 2A1/2A42-like protein-coding - - - - 20121222 -9606 101060703 LOC101060703 - - - 15 - uncharacterized LOC101060703 pseudo - - - - 20121222 -9606 101060704 LOC101060704 - - - 1 - lysophosphatidic acid phosphatase type 6-like protein-coding - - - - 20121222 -9606 101060705 LOC101060705 - - - 1 - uncharacterized LOC101060705 pseudo - - - - 20121102 -9606 101060706 LOC101060706 - - - 15 - uncharacterized LOC101060706 protein-coding - - - - 20121222 -9606 101060707 LOC101060707 - - - 11 - uncharacterized LOC101060707 pseudo - - - - 20121102 -9606 101060708 LOC101060708 - - - 11 - uncharacterized LOC101060708 pseudo - - - - 20121102 -9606 101060709 LOC101060709 - - - 1 - uncharacterized LOC101060709 pseudo - - - - 20121102 -9606 101060710 LOC101060710 - - - 2 - uncharacterized LOC101060710 protein-coding - - - - 20121222 -9606 101060711 LOC101060711 - - - 1 - uncharacterized LOC101060711 pseudo - - - - 20121102 -9606 101060712 LOC101060712 - - - 14 - uncharacterized LOC101060712 miscRNA - - - - 20121222 -9606 101060713 LOC101060713 - - - 1 - PRAME family member 17-like pseudo - - - - 20121102 -9606 101060714 LOC101060714 - - - 16 - sulfotransferase 1A3/1A4-like protein-coding - - - - 20121222 -9606 101060715 LOC101060715 - - - 1 - uncharacterized LOC101060715 pseudo - - - - 20121102 -9606 101060716 LOC101060716 - - - 15 - POTE ankyrin domain family member B-like protein-coding - - - - 20121222 -9606 101060717 LOC101060717 - - - 7 - uncharacterized LOC101060717 miscRNA - - - - 20121222 -9606 101060718 LOC101060718 - - - X - uncharacterized LOC101060718 protein-coding - - - - 20121222 -9606 101060719 LOC101060719 - - - 11 - uncharacterized LOC101060719 protein-coding - - - - 20121222 -9606 101060720 LOC101060720 - - - 12 - uncharacterized LOC101060720 miscRNA - - - - 20121222 -9606 101060721 LOC101060721 - - - 9 - uncharacterized LOC101060721 pseudo - - - - 20121102 -9606 101060722 LOC101060722 - - - 1 - uncharacterized LOC101060722 protein-coding - - - - 20121222 -9606 101060723 LOC101060723 - - - 1 - peptidyl-prolyl cis-trans isomerase A-like 4G-like protein-coding - - - - 20121222 -9606 101060724 LOC101060724 - - - 1 - uncharacterized LOC101060724 pseudo - - - - 20121102 -9606 101060725 LOC101060725 - - - 15 - uncharacterized LOC101060725 pseudo - - - - 20121102 -9606 101060726 LOC101060726 - - - 7 - putative uncharacterized protein FLJ44672-like pseudo - - - - 20121102 -9606 101060727 LOC101060727 - - - 21 - uncharacterized LOC101060727 pseudo - - - - 20121102 -9606 101060728 LOC101060728 - - - 11 - uncharacterized LOC101060728 pseudo - - - - 20121102 -9606 101060729 LOC101060729 - - - 16 - structure-specific endonuclease subunit SLX1-like protein-coding - - - - 20121222 -9606 101060730 LOC101060730 - - - 22 - uncharacterized LOC101060730 pseudo - - - - 20121102 -9606 101060731 LOC101060731 - - - 7 - uncharacterized LOC101060731 pseudo - - - - 20121102 -9606 101060732 LOC101060732 - - - 7 - uncharacterized LOC101060732 pseudo - - - - 20121102 -9606 101060733 LOC101060733 - - - 7 - 60S ribosomal protein L31-like pseudo - - - - 20121102 -9606 101060734 LOC101060734 - - - 7 - uncharacterized LOC101060734 pseudo - - - - 20121102 -9606 101060735 LOC101060735 - - - 7 - uncharacterized LOC101060735 pseudo - - - - 20121102 -9606 101060736 LOC101060736 - - - 7 - uncharacterized LOC101060736 pseudo - - - - 20121102 -9606 101060737 LOC101060737 - - - 7 - putative speedy protein E8-like pseudo - - - - 20121102 -9606 101060738 LOC101060738 - - - 7 - 60S ribosomal protein L31-like pseudo - - - - 20121102 -9606 101060739 LOC101060739 - - - 7 - putative uncharacterized protein FLJ46235-like pseudo - - - - 20121102 -9606 101060740 LOC101060740 - - - 7 - mucin-3A-like protein-coding - - - - 20121222 -9606 101060741 LOC101060741 - - - 7 - putative uncharacterized protein FLJ46235-like pseudo - - - - 20121102 -9606 101060742 LOC101060742 - - - 7 - putative uncharacterized protein FLJ46348-like protein-coding - - - - 20121222 -9606 101060743 LOC101060743 - - - 7 - putative uncharacterized protein FLJ46348-like pseudo - - - - 20121102 -9606 101060744 LOC101060744 - - - 7 - uncharacterized LOC101060744 pseudo - - - - 20121102 -9606 101060745 LOC101060745 - - - 7 - putative uncharacterized protein FLJ46235-like protein-coding - - - - 20121222 -9606 101060746 LOC101060746 - - - Un - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060747 LOC101060747 - - - 16 - 3-phosphoinositide-dependent protein kinase 1-like protein-coding - - - - 20121222 -9606 101060748 LOC101060748 - - - Un - uncharacterized LOC101060748 pseudo - - - - 20121102 -9606 101060749 LOC101060749 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060750 LOC101060750 - - - X - inosine-5'-monophosphate dehydrogenase 1-like pseudo - - - - 20121222 -9606 101060751 LOC101060751 - - - 12 - nucleoside diphosphate kinase B-like protein-coding - - - - 20121222 -9606 101060752 LOC101060752 - - - 7 - protein capicua homolog pseudo - - - - 20121102 -9606 101060753 LOC101060753 - - - X - chromosome transmission fidelity protein 8 homolog isoform 2-like protein-coding - - - - 20121222 -9606 101060754 LOC101060754 - - - Un - complement C4-B-like pseudo - - - - 20121222 -9606 101060755 LOC101060755 - - - 15 - uncharacterized LOC101060755 pseudo - - - - 20121102 -9606 101060756 LOC101060756 - - - Un - uncharacterized LOC101060756 protein-coding - - - - 20121222 -9606 101060757 LOC101060757 - - - Un - uncharacterized LOC101060757 pseudo - - - - 20121102 -9606 101060758 LOC101060758 - - - 9 - protein slowmo homolog 2-like pseudo - - - - 20121102 -9606 101060759 LOC101060759 - - - 7 - putative uncharacterized protein FLJ46348-like pseudo - - - - 20121102 -9606 101060760 LOC101060760 - - - 2 - uncharacterized LOC101060760 pseudo - - - - 20121222 -9606 101060761 LOC101060761 - - - 9 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060762 LOC101060762 - - - 3 - 60S ribosomal protein L13-like pseudo - - - - 20121102 -9606 101060763 LOC101060763 - - - 9 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060764 LOC101060764 - - - 7 - putative uncharacterized protein FLJ46348-like pseudo - - - - 20121102 -9606 101060765 LOC101060765 - - - 17 - protein FAM27E2-like pseudo - - - - 20121102 -9606 101060766 LOC101060766 - - - 1 - uncharacterized LOC101060766 pseudo - - - - 20121222 -9606 101060767 LOC101060767 - - - 17 - putative uncharacterized protein FLJ46089-like protein-coding - - - - 20121222 -9606 101060768 LOC101060768 - - - Un - uncharacterized LOC101060768 pseudo - - - - 20121102 -9606 101060769 LOC101060769 - - - Un - tektin-4 like protein LOC389833-like protein-coding - - - - 20121222 -9606 101060770 LOC101060770 - - - Un - uncharacterized LOC101060770 protein-coding - - - - 20121222 -9606 101060771 LOC101060771 - - - 12 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060772 LOC101060772 - - - X - paraneoplastic antigen-like protein 6B-like protein-coding - - - - 20121222 -9606 101060773 LOC101060773 - - - 17 - putative calcium-sensing receptor-like 1-like pseudo - - - - 20121102 -9606 101060774 LOC101060774 - - - 12 - uncharacterized LOC101060774 pseudo - - - - 20121102 -9606 101060775 LOC101060775 - - - 6 - uncharacterized LOC101060775 miscRNA - - - - 20121222 -9606 101060776 LOC101060776 - - - 16 - uncharacterized LOC101060776 pseudo - - - - 20121102 -9606 101060777 LOC101060777 - - - 5 - uncharacterized LOC101060777 pseudo - - - - 20121102 -9606 101060778 LOC101060778 - - - 16 - uncharacterized LOC101060778 protein-coding - - - - 20121222 -9606 101060779 LOC101060779 - - - 6 - HLA class II histocompatibility antigen, DRB1-10 beta chain-like pseudo - - - - 20121222 -9606 101060780 LOC101060780 - - - Un - cell division cycle protein 27 homolog pseudo - - - - 20121102 -9606 101060781 LOC101060781 - - - 22 - uncharacterized LOC101060781 pseudo - - - - 20121222 -9606 101060782 LOC101060782 - - - 16 - creatine transporter-like protein-coding - - - - 20121222 -9606 101060783 LOC101060783 - - - Un - uncharacterized LOC101060783 pseudo - - - - 20121102 -9606 101060784 LOC101060784 - - - Un - actin-related protein 3B-like pseudo - - - - 20121102 -9606 101060785 LOC101060785 - - - Y - oral-facial-digital syndrome 1 protein-like pseudo - - - - 20121102 -9606 101060786 LOC101060786 - - - 1 - uncharacterized LOC101060786 pseudo - - - - 20121102 -9606 101060787 LOC101060787 - - - 22 - putative uncharacterized protein ENSP00000383309-like protein-coding - - - - 20121222 -9606 101060788 LOC101060788 - - - Y - uncharacterized LOC101060788 pseudo - - - - 20121102 -9606 101060789 LOC101060789 - - - Un - low affinity immunoglobulin gamma Fc region receptor III-A-like protein-coding - - - - 20121222 -9606 101060790 LOC101060790 - - - Un - uncharacterized LOC101060790 pseudo - - - - 20121102 -9606 101060791 LOC101060791 - - - 2 - uncharacterized LOC101060791 pseudo - - - - 20121102 -9606 101060792 LOC101060792 - - - Un - uncharacterized LOC101060792 protein-coding - - - - 20121222 -9606 101060793 LOC101060793 - - - 1 - uncharacterized LOC101060793 pseudo - - - - 20121102 -9606 101060794 LOC101060794 - - - Un - protein USP6-like 2-like pseudo - - - - 20121222 -9606 101060795 LOC101060795 - - - 5 - uncharacterized LOC101060795 pseudo - - - - 20121102 -9606 101060796 LOC101060796 - - - 7 - uncharacterized LOC101060796 pseudo - - - - 20121102 -9606 101060797 LOC101060797 - - - 7 - mucin-3A-like protein-coding - - - - 20121222 -9606 101060798 LOC101060798 - - - 10 - aldo-keto reductase family 1 member C2-like protein-coding - - - - 20121222 -9606 101060799 LOC101060799 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060800 LOC101060800 - - - Y - ankyrin repeat domain-containing protein 20B-like pseudo - - - - 20121102 -9606 101060801 LOC101060801 - - - X - nck-associated protein 1-like pseudo - - - - 20121102 -9606 101060802 LOC101060802 - - - 2 - uncharacterized LOC101060802 pseudo - - - - 20121102 -9606 101060803 LOC101060803 - - - Un - Ig kappa chain V-II region RPMI 6410-like other - - - - 20121102 -9606 101060804 LOC101060804 - - - Y - uncharacterized LOC101060804 pseudo - - - - 20121102 -9606 101060805 LOC101060805 - - - Y - uncharacterized LOC101060805 pseudo - - - - 20121102 -9606 101060806 LOC101060806 - - - Y - testis-specific XK-related protein, Y-linked 2-like pseudo - - - - 20121102 -9606 101060807 LOC101060807 - - - 14 - Ig heavy chain V-II region SESS-like other - - - - 20121102 -9606 101060808 LOC101060808 - - - 1 - aldose reductase-like pseudo - - - - 20121102 -9606 101060809 LOC101060809 - - - Un - double homeobox protein 4-like pseudo - - - - 20121102 -9606 101060810 LOC101060810 - - - 19 - zinc finger protein 737-like pseudo - - - - 20121222 -9606 101060811 LOC101060811 - - - 15 - uncharacterized LOC101060811 pseudo - - - - 20121102 -9606 101060812 LOC101060812 - - - Un - uncharacterized LOC101060812 pseudo - - - - 20121102 -9606 101060813 LOC101060813 - - - Un - uncharacterized LOC101060813 pseudo - - - - 20121222 -9606 101060814 LOC101060814 - - - 16 - uncharacterized LOC101060814 pseudo - - - - 20121102 -9606 101060815 LOC101060815 - - - 21 - uncharacterized LOC101060815 protein-coding - - - - 20121222 -9606 101060816 LOC101060816 - - - 7 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060817 LOC101060817 - - - 19 - glycine cleavage system H protein, mitochondrial-like protein-coding - - - - 20121222 -9606 101060818 LOC101060818 - - - 7 - uncharacterized LOC101060818 pseudo - - - - 20121102 -9606 101060819 LOC101060819 - - - 16 - uncharacterized LOC101060819 pseudo - - - - 20121102 -9606 101060820 LOC101060820 - - - 5 - voltage-dependent anion-selective channel protein 1-like pseudo - - - - 20121102 -9606 101060821 LOC101060821 - - - 12 - alpha-2-macroglobulin-P-like protein-coding - - - - 20121222 -9606 101060822 LOC101060822 - - - 7 - probable E3 ubiquitin-protein ligase DTX2-like protein-coding - - - - 20121222 -9606 101060823 LOC101060823 - - - 7 - uncharacterized LOC101060823 pseudo - - - - 20121102 -9606 101060824 LOC101060824 - - - Un - double homeobox protein 4-like protein 4-like pseudo - - - - 20121102 -9606 101060825 LOC101060825 - - - 2 - uncharacterized LOC101060825 protein-coding - - - - 20121222 -9606 101060826 LOC101060826 - - - 1 - glycine cleavage system H protein, mitochondrial-like pseudo - - - - 20121102 -9606 101060827 LOC101060827 - - - 19 - transmembrane protein 50B-like pseudo - - - - 20121102 -9606 101060828 LOC101060828 - - - 16 - NEDD8-conjugating enzyme UBE2F-like pseudo - - - - 20121102 -9606 101060829 LOC101060829 - - - 9 - voltage-dependent N-type calcium channel subunit alpha-1B-like protein-coding - - - - 20121222 -9606 101060830 LOC101060830 - - - 7 - putative speedy protein E8-like pseudo - - - - 20121102 -9606 101060831 LOC101060831 - - - Un - uncharacterized LOC101060831 pseudo - - - - 20121102 -9606 101060832 LOC101060832 - - - 9 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060833 LOC101060833 - - - 7 - 60S ribosomal protein L31-like pseudo - - - - 20121102 -9606 101060834 LOC101060834 - - - Un - double homeobox protein 5-like pseudo - - - - 20121102 -9606 101060835 LOC101060835 - - - Un - HLA class II histocompatibility antigen, DQ beta 1 chain-like protein-coding - - - - 20121222 -9606 101060836 LOC101060836 - - - 2 - cancer/testis antigen 75-like pseudo - - - - 20121102 -9606 101060837 LOC101060837 - - - 6 - uncharacterized LOC101060837 miscRNA - - - - 20121222 -9606 101060838 LOC101060838 - - - 15 - Ig heavy chain V-I region V35-like other - - - - 20121102 -9606 101060839 LOC101060839 - - - 13 - uncharacterized LOC101060839 pseudo - - - - 20121102 -9606 101060840 LOC101060840 - - - Y - testis-specific XK-related protein, Y-linked 2-like pseudo - - - - 20121102 -9606 101060841 LOC101060841 - - - Un - cell division cycle protein 27 homolog pseudo - - - - 20121102 -9606 101060842 LOC101060842 - - - 11 - putative uncharacterized protein FLJ46348-like pseudo - - - - 20121102 -9606 101060843 LOC101060843 - - - 11 - uncharacterized LOC101060843 pseudo - - - - 20121102 -9606 101060844 LOC101060844 - - - Un - uncharacterized LOC101060844 pseudo - - - - 20121102 -9606 101060845 LOC101060845 - - - 5 - uncharacterized LOC101060845 pseudo - - - - 20121102 -9606 101060846 LOC101060846 - - - Un - protein FAM104B-like protein-coding - - - - 20121222 -9606 101060847 LOC101060847 - - - Un - ankyrin repeat domain-containing protein SOWAHC-like pseudo - - - - 20121102 -9606 101060848 LOC101060848 - - - X - uncharacterized LOC101060848 pseudo - - - - 20121102 -9606 101060849 LOC101060849 - - - 7 - uncharacterized LOC101060849 pseudo - - - - 20121102 -9606 101060850 LOC101060850 - - - 22 - putative POM121-like protein 1-like pseudo - - - - 20121102 -9606 101060851 LOC101060851 - - - Un - uncharacterized LOC101060851 pseudo - - - - 20121102 -9606 101060852 LOC101060852 - - - 22 - protein phosphatase 1 regulatory subunit 26-like pseudo - - - - 20121102 -9606 101060853 LOC101060853 - - - Un - angiogenic factor with G patch and FHA domains 1-like pseudo - - - - 20121102 -9606 101060854 LOC101060854 - - - Un - protein FAM27E2-like protein-coding - - - - 20121222 -9606 101060855 LOC101060855 - - - Y - protein capicua homolog pseudo - - - - 20121102 -9606 101060856 LOC101060856 - - - Un - uncharacterized LOC101060856 pseudo - - - - 20121102 -9606 101060857 LOC101060857 - - - 2 - uncharacterized LOC101060857 pseudo - - - - 20121102 -9606 101060858 LOC101060858 - - - 1 - protein capicua homolog pseudo - - - - 20121102 -9606 101060859 LOC101060859 - - - Un - putative tripartite motif-containing protein 53-like protein-coding - - - - 20121222 -9606 101060860 LOC101060860 - - - Un - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060861 LOC101060861 - - - 7 - uncharacterized LOC101060861 protein-coding - - - - 20121222 -9606 101060862 LOC101060862 - - - 18 - uncharacterized LOC101060862 miscRNA - - - - 20121222 -9606 101060863 LOC101060863 - - - Un - uncharacterized LOC101060863 pseudo - - - - 20121102 -9606 101060864 LOC101060864 - - - 3 - uncharacterized LOC101060864 pseudo - - - - 20121102 -9606 101060865 LOC101060865 - - - X - ras-related protein Rab-28-like pseudo - - - - 20121102 -9606 101060866 LOC101060866 - - - Un - uncharacterized LOC101060866 protein-coding - - - - 20121222 -9606 101060867 LOC101060867 - - - 13 - putative uncharacterized protein FLJ45355-like pseudo - - - - 20121102 -9606 101060868 LOC101060868 - - - 18 - interleukin-9 receptor-like pseudo - - - - 20121102 -9606 101060869 LVSKS - - MIM:614846 15 15q26-qter Levy-Shanske syndrome unknown - - - - 20121027 -9606 101101692 HELLPAR - LINC-HELLP HGNC:43984|MIM:614985 12 12q23 HELLP associated long non-coding RNA miscRNA HELLPAR HELLP associated long non-coding RNA O - 20121218 -9606 101101698 POROK7 - - MIM:614714 16 16q24.1-q24.3 Porokeratosis 7, disseminated superficial actinic unknown - - - - 20121115 -9606 101101768 ECTD8 - - MIM:602401 18 18q22.1-q22.3 Ectodermal dysplasia 8, hair/tooth/nail type unknown - - - - 20121117 -9606 101101769 ECTD5 - - MIM:614927 10 10q24.32-q25.1 Ectodermal dysplasia 5, hair/nail type unknown - - - - 20121117 -9606 101101770 ECTD6 - - MIM:614928 17 17p12-q21.2 Ectodermal dysplasia 6, hair/nail type unknown - - - - 20121117 -9606 101101771 ECTD7 - - MIM:614929 12 12p11.1-q21.1 Ectodermal dysplasia 7, hair/nail type unknown - - - - 20121117 -9606 101101772 LINC00601 - - HGNC:43916|Ensembl:ENSG00000235180|Vega:OTTHUMG00000019244 10 10q26.2 long intergenic non-protein coding RNA 601 miscRNA LINC00601 long intergenic non-protein coding RNA 601 O - 20121124 -9606 101101773 LINC00609 - - HGNC:43960|Ensembl:ENSG00000257585|Vega:OTTHUMG00000170616 14 14q13.2-q13.3 long intergenic non-protein coding RNA 609 miscRNA LINC00609 long intergenic non-protein coding RNA 609 O - 20121124 -9606 101101775 TMEM220-AS1 - - HGNC:44357|Ensembl:ENSG00000263523|Vega:OTTHUMG00000179250 17 17p13.1-p12 TMEM220 antisense RNA 1 miscRNA TMEM220-AS1 TMEM220 antisense RNA 1 O - 20121124 -9606 101101776 LOC101101776 - - - 14 - ribosome biogenesis protein BMS1 homolog pseudogene pseudo - - - - 20121124 -9606 101101841 LOC101101841 - - - 8 - mediator complex subunit 21 pseudogene pseudo - - - - 20121124 -9606 101154642 CHDT3 - - MIM:614954 9 9q31.1 Congenital heart defects, multiple types, 3 unknown - - - - 20121202 -9606 101154643 LOC101154643 - - - 7 - cyclin-dependent kinase 2 associated protein 2 pseudogene pseudo - - - - 20121207 -9606 101154644 LINCMD1 - linc-MD1 MIM:614933 6 6p12.2 long noncoding RNA, muscle differentiation 1 miscRNA - - - - 20121206 -9606 101154645 DBE-T - - MIM:614865 4 4q35 D4Z4 binding element transcript miscRNA - - - - 20121206 -9606 101154649 MBNP - - MIM:614692 6 6p21.3 ?Membranous nephropathy, susceptibility to unknown - - - - 20121214 -9606 101154686 MROH4P - - HGNC:44902 8 - maestro heat-like repeat family member 4, pseudogene pseudo MROH4P maestro heat-like repeat family member 4, pseudogene O - 20121227 -9606 101154687 TCONS_00024764 - - MIM:614977 16 - long non-coding RNA TCONS_00024764 miscRNA - - - - 20121220 -9606 101154752 PPKP1B - - MIM:614936 8 8q24.13-q24.21 Keratoderma, palmoplantar, punctate type IB unknown - - - - 20121219 -9606 101154753 PANDAR - PANDA HGNC:44048 6 6p21.2 promoter of CDKN1A antisense DNA damage activated RNA miscRNA PANDAR promoter of CDKN1A antisense DNA damage activated RNA O - 20121221 diff --git a/core/src/main/resources/sample_data/genes/sanger_gene_census.txt b/core/src/main/resources/sample_data/genes/sanger_gene_census.txt deleted file mode 100644 index 6cb031d3bce..00000000000 --- a/core/src/main/resources/sample_data/genes/sanger_gene_census.txt +++ /dev/null @@ -1 +0,0 @@ -Symbol Name GeneID Chr Chr Band Cancer Somatic Mut Cancer Germline Mut Tumour Types (Somatic Mutations) Tumour Types (Germline Mutations) Cancer Syndrome Tissue Type Cancer Molecular Genetics Mutation Type Translocation Partner Other Germline Mut Other Syndrome/Disease ABL1 v-abl Abelson murine leukemia viral oncogene homolog 1 25 9 9q34.1 yes "CML, ALL, T-ALL" L Dom "T, Mis" "BCR, ETV6, NUP214" ABL2 v-abl Abelson murine leukemia viral oncogene homolog 2 27 1 1q24-q25 yes AML L Dom T ETV6 ACSL3 acyl-CoA synthetase long-chain family member 3 2181 2 2q36 yes prostate E Dom T ETV1 AF15Q14 AF15q14 protein 57082 15 15q14 yes AML L Dom T MLL AF1Q ALL1-fused gene from cytoband 1q 10962 1 1q21 yes ALL L Dom T MLL AF3p21 "SH3 protein interacting with Nck, 90 kDa (ALL1 fused gene from 3p21)" 51517 3 3p21 yes ALL L Dom T MLL AF5q31 ALL1 fused gene from 5q31 27125 5 5q31 yes ALL L Dom T MLL AKAP9 A kinase (PRKA) anchor protein (yotiao) 9 10142 7 7q21-q22 yes papillary thyroid E Dom T BRAF AKT1 v-akt murine thymoma viral oncogene homolog 1 207 14 14q32.32 yes "breast, colorectal, ovarian, NSCLC" E Dom Mis AKT2 v-akt murine thymoma viral oncogene homolog 2 208 19 19q13.1-q13.2 yes "ovarian, pancreatic " E Dom A ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 217 12 12q24.2 yes leiomyoma M Dom T HMGA2 ALK anaplastic lymphoma kinase (Ki-1) 238 2 2p23 yes yes "ALCL, NSCLC, Neuroblastoma" neuroblastoma Familial neuroblastoma "L, E, M" Dom "T, Mis, A" "NPM1, TPM3, TFG, TPM4, ATIC, CLTC, MSN, ALO17, CARS, EML4" ALO17 KIAA1618 protein 57674 17 17q25.3 yes ALCL L Dom T ALK APC adenomatous polyposis of the colon gene 324 5 5q21 yes yes "colorectal, pancreatic, desmoid, hepatoblastoma, glioma, other CNS" "colorectal, pancreatic, desmoid, hepatoblastoma, glioma, other CNS" Adenomatous polyposis coli; Turcot syndrome "E, M, O" Rec "D, Mis, N, F, S" ARHGEF12 RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 23365 11 11q23.3 yes AML L Dom T MLL ARHH "RAS homolog gene family, member H (TTF)" 399 4 4p13 yes NHL L Dom T BCL6 ARID1A AT rich interactive domain 1A (SWI-like) 8289 1 1p35.3 yes "clear cell ovarian carcinoma, RCC" E Rec "Mis, N, F, S, D" ARID2 AT rich interactive domain 2 196528 12 12q12 yes hepatocellular carcinoma E Rec "N, S, F" ARNT aryl hydrocarbon receptor nuclear translocator 405 1 1q21 yes AML L Dom T ETV6 ASPSCR1 "alveolar soft part sarcoma cytoband region, candidate 1" 79058 17 17q25 yes alveolar soft part sarcoma M Dom T TFE3 ASXL1 additional sex combs like 1 171023 20 20q11.1 yes "MDS, CMML" L Rec "F, N, Mis" ATF1 activating transcription factor 1 466 12 12q13 yes "malignant melanoma of soft parts , angiomatoid fibrous histiocytoma " "E, M" Dom T "EWSR1, FUS" ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase 471 2 2q35 yes ALCL L Dom T ALK ATM ataxia telangiectasia mutated 472 11 11q22.3 yes yes T-PLL "leukemia, lymphoma, medulloblastoma, glioma" Ataxia-telangiectasia "L, O" Rec "D, Mis, N, F, S" ATRX alpha thalassemia/mental retardation syndrome X-linked 546 X Xq21.1 yes Pancreatic neuroendocrine tumors E Rec "Mis, F, N" yes ATR-X (alpha thalassemia/mental retardation) syndrome BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) 8314 3 3p21.31-p21.2 yes "uveal melanoma, breast, NSCLC" E Rec "N, Mis, F, S, O" BCL10 B-cell CLL/lymphoma 10 8915 1 1p22 yes MALT L Dom T IGH@ BCL11A B-cell CLL/lymphoma 11A 53335 2 2p13 yes B-CLL L Dom T IGH@ BCL11B B-cell CLL/lymphoma 11B (CTIP2) 64919 14 14q32.1 yes T-ALL L Dom T TLX3 BCL2 B-cell CLL/lymphoma 2 596 18 18q21.3 yes "NHL, CLL" L Dom T IGH@ BCL3 B-cell CLL/lymphoma 3 602 19 19q13 yes CLL L Dom T IGH@ BCL5 B-cell CLL/lymphoma 5 603 17 17q22 yes CLL L Dom T MYC BCL6 B-cell CLL/lymphoma 6 604 3 3q27 yes "NHL, CLL" L Dom "T, Mis" "IG loci, ZNFN1A1, LCP1, PIM1, TFRC, MHC2TA, NACA, HSPCB, HSPCA, HIST1H4I, IL21R, POU2AF1, ARHH, EIF4A2, SFRS3" BCL7A B-cell CLL/lymphoma 7A 605 12 12q24.1 yes BNHL L Dom T MYC BCL9 B-cell CLL/lymphoma 9 607 1 1q21 yes B-ALL L Dom T "IGH@, IGL@" BCR breakpoint cluster region 613 22 22q11.21 yes "CML, ALL, AML" L Dom T "ABL1, FGFR1, JAK2 " BHD "folliculin, Birt-Hogg-Dube syndrome" 201163 17 17p11.2 yes "renal, fibrofolliculomas, trichodiscomas " Birt-Hogg-Dube syndrome "E, M" Rec? "Mis. N, F" BIRC3 baculoviral IAP repeat-containing 3 330 11 11q22-q23 yes MALT L Dom T MALT1 BLM Bloom Syndrome 641 15 15q26.1 yes "leukemia, lymphoma, skin squamous cell , other cancers" Bloom Syndrome "L, E" Rec "Mis, N, F" BMPR1A "bone morphogenetic protein receptor, type IA" 657 10 10q22.3 yes gastrointestinal polyps Juvenile polyposis E Rec "Mis, N, F" BRAF v-raf murine sarcoma viral oncogene homolog B1 673 7 7q34 yes "melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma" E Dom "Mis, T, O" "AKAP9, KIAA1549" yes Cardio-facio-cutaneous syndrome BRCA1 familial breast/ovarian cancer gene 1 672 17 17q21 yes yes ovarian "breast, ovarian" Hereditary breast/ovarian cancer E Rec "D, Mis, N, F, S" BRCA2 familial breast/ovarian cancer gene 2 675 13 13q12 yes yes "breast, ovarian, pancreatic" "breast, ovarian, pancreatic, leukemia (FANCB, FANCD1)" Hereditary breast/ovarian cancer "L, E" Rec "D, Mis, N, F, S" BRD3 bromodomain containing 3 8019 9 9q34 yes lethal midline carcinoma of young people E Dom T "NUT, C15orf55" BRD4 bromodomain containing 4 23476 19 19p13.1 yes lethal midline carcinoma of young people E Dom T "NUT, C15orf55" BRIP1 BRCA1 interacting protein C-terminal helicase 1 83990 17 17q22 yes "AML, leukemia, breast" "Fanconi anaemia J, breast cancer susceptiblity" "L, E" Rec "F, N, Mis" BTG1 "B-cell translocation gene 1, anti-proliferative" 694 12 12q22 yes BCLL L Dom T MYC BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 701 15 15q15 yes rhabdomyosarcoma Mosaic variegated aneuploidy M Rec "Mis, N, F, S" C12orf9 cytoband 12 open reading frame 9 93669 12 12q14.3 yes lipoma M Dom T LPP C15orf21 cytoband 15 open reading frame 21 283651 15 15q21.1 yes prostate E Dom T ETV1 C15orf55 cytoband 15 open reading frame 55 256646 15 15q14 yes lethal midline carcinoma E Dom T "BRD3, BRD4" C16orf75 cytoband 16 open reading frame 75 116028 16 16p13.13 yes "PMBL, Hodgkin Lymphona, " L Dom T CIITA CANT1 calcium activated nucleotidase 1 124583 17 17q25 yes prostate E Dom T ETV4 CARD11 "caspase recruitment domain family, member 11" 84433 7 7p22 yes DLBCL L Dom Mis CARS cysteinyl-tRNA synthetase 833 11 11p15.5 yes ALCL L Dom T ALK CBFA2T1 "core-binding factor, runt domain, alpha subunit 2;translocated to, 1 (ETO)" 862 8 8q22 yes AML L Dom T "MLL, RUNX1" CBFA2T3 "core-binding factor, runt domain, alpha subunit 2; translocated to, 3 (MTG-16)" 863 16 16q24 yes AML L Dom T RUNX1 CBFB "core-binding factor, beta subunit" 865 16 16q22 yes AML L Dom T MYH11 CBL Cas-Br-M (murine) ecotropic retroviral transforming 867 11 11q23.3 yes "AML, JMML, MDS" L "Dom, Rec" "T, Mis S, O" MLL CBLB Cas-Br-M (murine) ecotropic retroviral transforming sequence b 868 3 3q13.11 yes AML L Rec Mis S CBLC Cas-Br-M (murine) ecotropic retroviral transforming sequence c 23624 19 19q13.2 yes AML L Rec M CCNB1IP1 "cyclin B1 interacting protein 1, E3 ubiquitin protein ligase" 57820 14 14q11.2 yes leiomyoma M Dom T HMGA2 CCND1 cyclin D1 595 11 11q13 yes "CLL, B-ALL, breast" "L, E" Dom T "IGH@, FSTL3" CCND2 cyclin D2 894 12 12p13 yes "NHL,CLL" L Dom T IGL@ CCND3 cyclin D3 896 6 6p21 yes MM L Dom T IGH@ CCNE1 cyclin E1 898 19 19q12 yes serous ovarian E Dom A CD273 programmed cell death 1 ligand 2 80380 9 9p24.2 yes "PMBL, Hodgkin Lymphona, " L Dom T CIITA CD274 CD274 molecule 29126 9 9p24 yes "PMBL, Hodgkin Lymphona, " L Dom T CIITA CD74 "CD74 molecule, major histocompatibility complex, class II invariant chain" 972 5 5q32 yes NSCLC E Dom T ROS1 CD79A "CD79a molecule, immunoglobulin-associated alpha" 973 19 19q13.2 yes DLBCL L Dom "O, S" CD79B "CD79b molecule, immunoglobulin-associated beta" 974 17 17q23 yes DLBCL L Dom "Mis, O" CDH1 "cadherin 1, type 1, E-cadherin (epithelial) (ECAD)" 999 16 16q22.1 yes yes "lobular breast, gastric" gastric Familial gastric carcinoma E Rec "Mis, N, F, S" CDH11 "cadherin 11, type 2, OB-cadherin (osteoblast)" 1009 16 16q22.1 yes aneurysmal bone cysts M Dom T USP6 CDK12 cyclin-dependent kinase 12 51755 17 17q12 yes serous ovarian E Rec "Mis, N, F" CDK4 cyclin-dependent kinase 4 1019 12 12q14 yes melanoma Familial malignant melanoma E Dom Mis CDK6 cyclin-dependent kinase 6 1021 7 7q21-q22 yes ALL L Dom T MLLT10 CDKN2A -p16(INK4a) cyclin-dependent kinase inhibitor 2A (p16(INK4a)) gene 1029 9 9p21 yes yes "melanoma, multiple other tumour types" "melanoma, pancreatic" Familial malignant melanoma "L, E, M, O" Rec "D, Mis, N, F, S" CDKN2A- p14ARF cyclin-dependent kinase inhibitor 2A-- p14ARF protein 1029 9 9p21 yes yes "melanoma, multiple other tumour types" "melanoma, pancreatic" Familial malignant melanoma "L, E, M, O" Rec "D, S" CDKN2C "cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)" 1031 1 1p32 yes "glioma, MM" "O, L" Rec D CDX2 caudal type homeo box transcription factor 2 1045 13 13q12.3 yes AML L Dom T ETV6 CEBPA "CCAAT/enhancer binding protein (C/EBP), alpha" 1050 19 19q13.1 yes "AML, MDS" L Dom "Mis, N, F" CEP1 centrosomal protein 1 11064 9 9q33 yes "MPD, NHL" L Dom T FGFR1 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 79145 8 8q11.2 yes salivary adenoma E Dom T PLAG1 CHEK2 CHK2 checkpoint homolog (S. pombe) 11200 22 22q12.1 yes breast familial breast cancer E Rec F CHIC2 cysteine-rich hydrophobic domain 2 26511 4 4q11-q12 yes AML L Dom T ETV6 CHN1 chimerin (chimaerin) 1 1123 2 2q31-q32.1 yes extraskeletal myxoid chondrosarcoma M Dom T TAF15 CIC capicua homolog 23152 19 19q13.2 yes oligodendroglioma O Rec "Mis, F, S" CIITA "class II, major histocompatibility complex, transactivator" 4261 16 16p13 yes "PMBL, Hodgkin Lymphona, " L Dom T "FLJ27352, CD274, CD273, RALGDS, RUNDC2A, C16orf75" CLTC "clathrin, heavy polypeptide (Hc)" 1213 17 17q11-qter yes "ALCL, renal " L Dom T "ALK, TFE3" CLTCL1 "clathrin, heavy polypeptide-like 1" 8218 22 22q11.21 yes ALCL L Dom T ? CMKOR1 chemokine orphan receptor 1 57007 2 2q37.3 yes lipoma M Dom T HMGA2 COL1A1 "collagen, type I, alpha 1" 1277 17 17q21.31-q22 yes "dermatofibrosarcoma protuberans, aneurysmal bone cyst " M Dom T "PDGFB, USP6" yes Osteogenesis imperfecta COPEB core promoter element binding protein (KLF6) 1316 10 10p15 yes "prostate, glioma" "E, O" Rec "Mis, N " COX6C cytochrome c oxidase subunit VIc 1345 8 8q22-q23 yes uterine leiomyoma M Dom T HMGA2 CREB1 cAMP responsive element binding protein 1 1385 2 2q34 yes "clear cell sarcoma, angiomatoid fibrous histiocytoma" M Dom T EWSR1 CREB3L1 cAMP responsive element binding protein 3-like 1 90993 11 11p11.2 yes myxofibrosarcoma M Dom T FUS CREB3L2 cAMP responsive element binding protein 3-like 2 64764 7 7q34 yes fibromyxoid sarcoma M Dom T FUS CREBBP CREB binding protein (CBP) 1387 16 16p13.3 yes "ALL, AML, DLBCL, B-NHL " L Dom/Rec "T, N, F, Mis, O" "MLL, MORF, RUNXBP2" yes Rubinstein-Taybi syndrome CRLF2 cytokine receptor-like factor 2 64109 "X,Y" Xp22.3; Yp11.3 yes "B-ALL, Downs associated ALL" L Dom "Mis, T" "P2RY8, IGH@" CRTC3 CREB regulated transcription coactivator 3 64784 15 15q26.1 yes salivary gland mucoepidermoid E Dom T MAML2 CTNNB1 "catenin (cadherin-associated protein), beta 1" 1499 3 3p22-p21.3 yes "colorectal, cvarian, hepatoblastoma, others, pleomorphic salivary adenoma" "E, M, O" Dom "H, Mis, T" PLAG1 CYLD familial cylindromatosis gene 1540 16 16q12-q13 yes yes cylindroma cylindroma Familial cylindromatosis E Rec "Mis, N, F, S" D10S170 "DNA segment on cytoband 10 (unique) 170, H4 gene (PTC1)" 8030 10 10q21 yes "papillary thyroid, CML" E Dom T "RET, PDGFRB" DAXX death-domain associated protein 1616 6 6p21.3 yes Pancreatic neuroendocrine tumors E Rec "Mis, F, N" DDB2 damage-specific DNA binding protein 2 1643 11 11p12 yes "skin basal cell, skin squamous cell, melanoma" Xeroderma pigmentosum (E) E Rec "Mis, N" DDIT3 DNA-damage-inducible transcript 3 1649 12 12q13.1-q13.2 yes liposarcoma M Dom T FUS DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 1662 11 11q22-q23 yes AML* L Dom T NUP98 DDX5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 1655 17 17q21 yes prostate E Dom T ETV4 DDX6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 1656 11 11q23.3 yes B-NHL L Dom T IGH@ DEK DEK oncogene (DNA binding) 7913 6 6p23 yes AML L Dom T NUP214 DICER1 "dicer 1, ribonuclease type III " 23405 14 14q32.13 yes pleuropulmonary blastoma Familial Pleuropulmonary Blastoma E Rec "Mis F, N" DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 1788 2 2p23 yes AML L Rec "Mis, F, N, S" DUX4 "double homeobox, 4" 22947 4 4q35 yes soft tissue sarcoma M Dom T CIC EBF1 early B-cell factor 1 1879 5 5q34 yes lipoma M Dom T HMGA2 EGFR "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 1956 7 7p12.3-p12.1 yes yes "glioma, NSCLC" NSCLC Familial lung cancer "E, O" Dom "A, O, Mis" EIF4A2 "eukaryotic translation initiation factor 4A, isoform 2" 1974 3 3q27.3 yes NHL L Dom T BCL6 ELF4 E74-like factor 4 (ets domain transcription factor) 2000 X Xq26 yes AML L Dom T ERG ELK4 "ELK4, ETS-domain protein (SRF accessory protein 1)" 2005 1 1q32 yes prostate E Dom T SLC45A3 ELKS ELKS protein 23085 12 12p13.3 yes papillary thyroid E Dom T RET ELL ELL gene (11-19 lysine-rich leukemia gene) 8178 19 19p13.1 yes AL L Dom T MLL ELN elastin 2006 7 7q11.23 yes B-ALL L Dom T PAX5 yes "Supravalvular Aortic Stenosis, Cutis laxa , Williams-Beuren Syndrome" EML4 echinoderm microtubule associated protein like 4 27436 2 2p21 yes NSCLC E Dom T ALK EP300 300 kd E1A-Binding protein gene 2033 22 22q13 yes "colorectal, breast, pancreatic, AML, ALL, DLBCL" "L, E" Rec "T, N, F, Mis, O" "MLL, RUNXBP2" EPS15 epidermal growth factor receptor pathway substrate 15 (AF1p) 2060 1 1p32 yes ALL L Dom T MLL ERBB2 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 2064 17 17q21.1 yes "breast, ovarian, other tumour types, NSCLC, gastric" E Dom "A, Mis, O" ERCC2 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2068 19 19q13.2-q13.3 yes "skin basal cell, skin squamous cell, melanoma" Xeroderma pigmentosum (D) E Rec "Mis, N, F, S" ERCC3 "excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing)" 2071 2 2q21 yes "skin basal cell, skin squamous cell, melanoma" Xeroderma pigmentosum (B) E Rec "Mis, S" ERCC4 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 2072 16 16p13.3-p13.13 yes "skin basal cell, skin squamous cell, melanoma" Xeroderma pigmentosum (F) E Rec "Mis, N, F" ERCC5 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 2073 13 13q33 yes "skin basal cell, skin squamous cell, melanoma" Xeroderma pigmentosum (G) E Rec "Mis, N, F" ERG v-ets erythroblastosis virus E26 oncogene like (avian) 2078 21 21q22.3 yes "Ewing sarcoma, prostate, AML" "M, E, L" Dom T "EWSR1, TMPRSS2, ELF4, FUS, HERPUD1, NDRG1" ETV1 ets variant gene 1 2115 7 7p22 yes "Ewing sarcoma, prostate" "M, E" Dom T "EWSR1, TMPRSS2, SLC45A3, C15orf21, HNRNPA2B1. ACSL3" ETV4 "ets variant gene 4 (E1A enhancer binding protein, E1AF)" 2118 17 17q21 yes "Ewing sarcoma, Prostate carcinoma" "M, E" Dom T "EWSR1, TMPRSS2, DDX5, KLK2, CANT1" ETV5 ets variant gene 5 2119 3 3q28 yes Prostate E Dom T "TMPRSS2, SCL45A3" ETV6 ets variant gene 6 (TEL oncogene) 2120 12 12p13 yes "congenital fibrosarcoma, multiple leukemia and lymphoma, secretory breast, MDS, ALL" "L, E, M" Dom T "NTRK3, RUNX1, PDGFRB, ABL1, MN1, ABL2, FACL6, CHIC2, ARNT, JAK2, EVI1, CDX2, STL, HLXB9, MDS2, PER1, SYK, TTL, FGFR3, PAX5" EVI1 ecotropic viral integration site 1 2122 3 3q26 yes "AML, CML" L Dom T "RUNX1, ETV6, PRDM16, RPN1" EWSR1 Ewing sarcoma breakpoint region 1 (EWS) 2130 22 22q12 yes "Ewing sarcoma, desmoplastic small round cell tumor , ALL, clear cell sarcoma, sarcoma, myoepithelioma" "L, M" Dom T "FLI1, ERG, ZNF278, NR4A3, FEV, ATF1, ETV1, ETV4, WT1, ZNF384, CREB1, POU5F1, PBX1" EXT1 multiple exostoses type 1 gene 2131 8 8q24.11-q24.13 yes "exostoses, osteosarcoma" Multiple Exostoses Type 1 M Rec "Mis, N, F, S" EXT2 multiple exostoses type 2 gene 2132 11 11p12-p11 yes "exostoses, osteosarcoma" Multiple Exostoses Type 2 M Rec "Mis, N, F, S" EZH2 enhancer of zeste homolog 2 2146 7 7q35-q36 yes DLBCL L Rec? Mis FACL6 "fatty-acid-coenzyme A ligase, long-chain 6" 23305 5 5q31 yes "AML, AEL" L Dom T ETV6 FANCA "Fanconi anemia, complementation group A" 2175 16 16q24.3 yes "AML, leukemia" Fanconi anaemia A L Rec "D, Mis, N, F, S" FANCC "Fanconi anemia, complementation group C" 2176 9 9q22.3 yes "AML, leukemia" Fanconi anaemia C L Rec "D, Mis, N, F, S" FANCD2 "Fanconi anemia, complementation group D2" 2177 3 3p26 yes "AML, leukemia" Fanconi anaemia D2 L Rec "D, Mis, N, F" FANCE "Fanconi anemia, complementation group E" 2178 6 6p21-p22 yes "AML, leukemia" Fanconi anaemia E L Rec "N, F, S" FANCF "Fanconi anemia, complementation group F" 2188 11 11p15 yes "AML, leukemia" Fanconi anaemia F L Rec "N, F" FANCG "Fanconi anemia, complementation group G" 2189 9 9p13 yes "AML, leukemia" Fanconi anaemia G L Rec "Mis, N, F, S" FBXW7 "F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)" 55294 4 4q31.3 yes "colorectal, endometrial, T-ALL" "E, L" Rec "Mis, N, D, F" FCGR2B "Fc fragment of IgG, low affinity IIb, receptor for (CD32)" 2213 1 1q23 yes ALL L Dom T ? FEV FEV protein - (HSRNAFEV) 54738 2 2q36 yes Ewing sarcoma M Dom T "EWSR1, FUS" FGFR1 fibroblast growth factor receptor 1 2260 8 8p11.2-p11.1 yes "MPD, NHL" L Dom T "BCR, FOP, ZNF198, CEP1" yes "Pfeiffer syndrome, Kallman syndrome" FGFR1OP FGFR1 oncogene partner (FOP) 11116 6 6q27 yes "MPD, NHL" L Dom T FGFR1 FGFR2 fibroblast growth factor receptor 2 2263 10 10q26 yes "gastric. NSCLC, endometrial" E Dom Mis yes "Crouzon, Pfeiffer, and Apert syndromes" FGFR3 fibroblast growth factor receptor 3 2261 4 4p16.3 yes "bladder, MM, T-cell lymphoma" "L, E" Dom "Mis, T" "IGH@, ETV6" yes "Hypochondroplasia, Thanatophoric dysplasia" FH fumarate hydratase 2271 1 1q42.1 yes "lieomyomatosis, renal" hereditary leiomyomatosis and renal cell cancer "E, M" Rec "Mis, N, F" FHIT fragile histidine triad gene 2272 3 3p14.2 yes pleomorphic salivary gland adenoma E Dom T HMGA2 FIP1L1 FIP1 like 1 (S. cerevisiae) 81608 4 4q12 yes idiopathic hypereosinophilic syndrome L Dom T PDGFRA FLI1 Friend leukemia virus integration 1 2313 11 11q24 yes Ewing sarcoma M Dom T EWSR1 FLJ27352 "BX648577, FLJ27352 hypothetical LOC145788" 145788 15 15q21.3 yes "PMBL, Hodgkin Lymphona, " L Dom T CIITA FLT3 fms-related tyrosine kinase 3 2322 13 13q12 yes "AML, ALL" L Dom "Mis, O" FNBP1 formin binding protein 1 (FBP17) 23048 9 9q23 yes AML L Dom T MLL FOXL2 forkhead box L2 668 3 3q23 yes granulosa-cell tumour of the ovary O Dom Mis yes "Blepharophimosis, ptosis and epicanthus inversus Types I, II; Premature ovarian failure type III" FOXO1A forkhead box O1A (FKHR) 2308 13 13q14.1 yes alveolar rhabdomyosarcomas M Dom T PAX3 FOXO3A forkhead box O3A 2309 6 6q21 yes AL L Dom T MLL FOXP1 forkhead box P1 27086 3 3p14.1 yes ALL L Dom T PAX5 FSTL3 follistatin-like 3 (secreted glycoprotein) 10272 19 19p13 yes B-CLL L Dom T CCND1 FUBP1 far upstream element (FUSE) binding protein 1 8880 1 1p13.1 yes oligodendroglioma O Rec "F, N" FUS "fusion, derived from t(12;16) malignant liposarcoma" 2521 16 16p11.2 yes "liposarcoma, AML, Ewing sarcoma, angiomatoid fibrous histiocytoma, fibromyxoid sarcoma" "M, L" Dom T "DDIT3, ERG, FEV, ATF1, CREB3L2, CREB3L1" FVT1 follicular lymphoma variant translocation 1 2531 18 18q21.3 yes B-NHL L Dom T IGK@ GAS7 growth arrest-specific 7 8522 17 17p yes AML* L Dom T MLL GATA1 GATA binding protein 1 (globin transcription factor 1) 2623 X Xp11.23 yes megakaryoblastic leukemia of Downs Syndrome L Dom "Mis, F" GATA2 GATA binding protein 2 2624 3 3q21.3 yes AML(CML blast transformation) L Dom Mis GATA3 GATA binding protein 3 2625 10 10p15 yes breast E Rec "F, N, S" yes "HDR syndrome (HYPOPARATHYROIDISM, SENSORINEURAL DEAFNESS, AND RENAL DISEASE)" GMPS guanine monphosphate synthetase 8833 3 3q24 yes AML L Dom T MLL GNA11 "guanine nucleotide binding protein (G protein), alpha 11 (Gq class)" 2767 19 19p13.3 yes uveal melanoma E Dom Mis GNAQ "guanine nucleotide binding protein (G protein), q polypeptide" 2776 9 9q21 yes uveal melanoma E Dom Mis GNAS "guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1" 2778 20 20q13.2 yes pituitary adenoma E Dom Mis yes "McCune-Albright syndrome; pseudohypoparathyroidism, type IA" GOLGA5 "golgi autoantigen, golgin subfamily a, 5 (PTC5)" 9950 14 14q yes papillary thyroid E Dom T RET GOPC golgi associated PDZ and coiled-coil motif containing 57120 6 6q21 yes glioblastoma O Dom O ROS1 GPC3 glypican 3 2719 X Xq26.1 yes Wilms tumour Simpson-Golabi-Behmel syndrome O Rec/X "T, D, Mis, N, F, S" GPHN gephyrin (GPH) 10243 14 14q24 yes AL L Dom T MLL GRAF GTPase regulator associated with focal adhesion kinase pp125(FAK) 23092 5 5q31 yes "AML, MDS" L Dom "T, F, S" MLL HCMOGT-1 sperm antigen HCMOGT-1 92521 17 17p11.2 yes JMML L Dom T PDGFRB HEAB ATP_GTP binding protein 10978 11 11q12 yes AML L Dom T MLL HEI10 enhancer of invasion 10 - fused to HMGA2 57820 14 14q11.1 yes uterine leiomyoma M Dom T HMGA2 HERPUD1 "homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1" 9709 16 16q12.2-q13 yes prostate E Dom T ERG HIP1 huntingtin interacting protein 1 3092 7 7q11.23 yes CMML L Dom T PDGFRB HIST1H4I "histone 1, H4i (H4FM)" 8294 6 6p21.3 yes NHL L Dom T BCL6 HLF hepatic leukemia factor 3131 17 17q22 yes ALL L Dom T TCF3 HLXB9 homeo box HB9 3110 7 7q36 yes AML L Dom T ETV6 yes CURRARINO SYNDROME HMGA1 high mobility group AT-hook 1 3159 6 6p21 yes "microfollicular thyroid adenoma, various benign mesenchymal tumors," "E, M" Dom T ? HMGA2 high mobility group AT-hook 2 (HMGIC) 8091 12 12q15 yes "lipoma, leiomyoma, pleiomorphic salivary gland adenoma" M Dom T " LHFP, RAD51L1, LPP, HEI10, COX6C, CMKOR1, NFIB, ALDH2, CCNB1IP1, EBF1, WIF1, FHIT" HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 3181 7 7p15 yes prostate E Dom T ETV1 HOOK3 hook homolog 3 84376 8 8p11.21 yes papillary thyroid E Dom T RET HOXA11 homeo box A11 3207 7 7p15-p14.2 yes CML L Dom T NUP98 HOXA13 homeo box A13 3209 7 7p15-p14.2 yes AML L Dom T NUP98 HOXA9 homeo box A9 3205 7 7p15-p14.2 yes AML* L Dom T "NUP98, MSI2" HOXC11 homeo box C11 3227 12 12q13.3 yes AML L Dom T NUP98 HOXC13 homeo box C13 3229 12 12q13.3 yes AML L Dom T NUP98 HOXD11 homeo box D11 3237 2 2q31-q32 yes AML L Dom T NUP98 HOXD13 homeo box D13 3239 2 2q31-q32 yes AML* L Dom T NUP98 HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog 3265 11 11p15.5 yes yes "infrequent sarcomas, rare other types" "rhadomyosarcoma, ganglioneuroblastoma, bladder" Costello syndrome "E, L, M" Dom Mis HRPT2 hyperparathyroidism 2 79577 1 1q21-q31 yes yes parathyroid adenoma "parathyroid adenoma, mulitiple ossifying jaw fibroma " Hyperparathyroidism-jaw tumor syndrome "E, M" Rec "Mis, N, F" HSPCA "heat shock 90kDa protein 1, alpha" 3320 14 14q32.31 yes NHL L Dom T BCL6 HSPCB "heat shock 90kDa protein 1, beta" 3326 6 6p12 yes NHL L Dom T BCL6 IDH1 "isocitrate dehydrogenase 1 (NADP+), soluble" 3417 2 2q33.3 yes gliobastoma O Dom Mis IDH2 "socitrate dehydrogenase 2 (NADP+), mitochondrial " 3418 15 15q26.1 yes GBM M Dom M IGH@ immunoglobulin heavy locus 3492 14 14q32.33 yes "MM, Burkitt lymphoma, NHL, CLL, B-ALL, MALT, MLCLS" L Dom T "MYC, FGFR3,PAX5, IRTA1, IRF4, CCND1, BCL9, BCL8, BCL6, BCL2, BCL3, BCL10, BCL11A. LHX4, DDX6, NFKB2, PAFAH1B2, PCSK7, CRLF2" IGK@ immunoglobulin kappa locus 50802 2 2p12 yes "Burkitt lymphoma, B-NHL" L Dom T "MYC, FVT1" IGL@ immunoglobulin lambda locus 3535 22 22q11.1-q11.2 yes Burkitt lymphoma L Dom T "BCL9, MYC, CCND2" IKZF1 IKAROS family zinc finger 1 10320 7 7p12.2 yes ALL L Rec? D IL2 interleukin 2 3558 4 4q26-q27 yes intestinal T-cell lymphoma L Dom T TNFRSF17 IL21R interleukin 21 receptor 50615 16 16p11 yes NHL L Dom T BCL6 IL6ST "interleukin 6 signal transducer (gp130, oncostatin M receptor)" 3572 5 5q11 yes hepatocellular ca E Dom O IL7R interleukin 7 receptor 3575 5 5p13 yes ALL L Dom "Mis, O" yes Severe combined immune deficiency IRF4 interferon regulatory factor 4 3662 6 6p25-p23 yes MM L Dom T IGH@ IRTA1 immunoglobulin superfamily receptor translocation associated 1 83417 1 1q21 yes B-NHL L Dom T IGH@ ITK IL2-inducible T-cell kinase 3702 5 5q31-q32 yes peripheral T-cell lymphoma L Dom T SYK JAK1 Janus kinase 1 3716 1 1p32.3-p31.3 yes ALL L Dom Mis JAK2 Janus kinase 2 3717 9 9p24 yes "ALL, AML, MPD, CML" L Dom "T, Mis, O" "ETV6, PCM1, BCR" JAK3 Janus kinase 3 3718 19 19p13.1 yes "acute megakaryocytic leukemia, " L Dom Mis JAZF1 juxtaposed with another zinc finger gene 1 221895 7 7p15.2-p15.1 yes endometrial stromal tumours M Dom T SUZ12 JUN jun oncogene 3725 1 1p32-p31 yes sarcoma M Dom A KDM5A "lysine (K)-specific demethylase 5A, JARID1A" 5927 12 12p11 yes AML L Dom T NUP98 KDM5C lysine (K)-specific demethylase 5C (JARID1C) 8242 X Xp11.22-p11.21 yes clear cell renal carcinoma E Rec "N, F, S" KDM6A "lysine (K)-specific demethylase 6A, UTX" 7403 X Xp11.2 yes "renal, oesophageal SCC, MM" "E, L" Rec "D, N, F, S" KDR vascular endothelial growth factor receptor 2 3791 4 4q11-q12 yes "NSCLC, angiosarcoma" E Dom Mis KIAA1549 KIAA1549 57670 7 7q34 yes pilocytic astrocytoma O Dom O BRAF KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 3815 4 4q12 yes yes "GIST, AML, TGCT, mastocytosis, mucosal melanoma" "GIST, epithelioma" Familial gastrointestinal stromal tumour "L, M, O, E" Dom "Mis, O" yes Piebald trait KLK2 kallikrein-related peptidase 2 3817 19 19q13.41 yes prostate E Dom T ETV4 KRAS v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 3845 12 12p12.1 yes "pancreatic, colorectal, lung, thyroid, AML, others" "L, E, M, O" Dom Mis KTN1 kinectin 1 (kinesin receptor) 3895 14 14q22.1 yes papillary thryoid E Dom T RET LAF4 lymphoid nuclear protein related to AF4 3899 2 2q11.2-q12 yes "ALL, T-ALL" L Dom T "MLL, RUNX1" LASP1 LIM and SH3 protein 1 3927 17 17q11-q21.3 yes AML L Dom T MLL LCK lymphocyte-specific protein tyrosine kinase 3932 1 1p35-p34.3 yes T-ALL L Dom T TRB@ LCP1 lymphocyte cytosolic protein 1 (L-plastin) 3936 13 13q14.1-q14.3 yes NHL L Dom T BCL6 LCX leukemia-associated protein with a CXXC domain 80312 10 10q21 yes AML L Dom T MLL LHFP lipoma HMGIC fusion partner 10186 13 13q12 yes lipoma M Dom T HMGA2 LIFR leukemia inhibitory factor receptor 3977 5 5p13-p12 yes salivary adenoma E Dom T PLAG1 LMO1 LIM domain only 1 (rhombotin 1) (RBTN1) 4004 11 11p15 yes yes "T-ALL, neuroblastoma" neuroblastoma L Dom "T, A" TRD@ LMO2 LIM domain only 2 (rhombotin-like 1) (RBTN2) 4005 11 11p13 yes T-ALL L Dom T TRD@ LPP LIM domain containing preferred translocation partner in lipoma 4026 3 3q28 yes "lipoma, leukemia" "L, M" Dom T "HMGA2, MLL, C12orf9" LYL1 lymphoblastic leukemia derived sequence 1 4066 19 19p13.2-p13.1 yes T-ALL L Dom T TRB@ MADH4 Homolog of Drosophila Mothers Against Decapentaplegic 4 gene 4089 18 18q21.1 yes yes "colorectal, pancreatic, small intestine " gastrointestinal polyps Juvenile polyposis E Rec "D, Mis, N, F" MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog 4094 16 16q22-q23 yes MM L Dom T IGH@ MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) 9935 20 20q11.2-q13.1 yes MM L Dom T IGH@ MALT1 mucosa associated lymphoid tissue lymphoma translocation gene 1 10892 18 18q21 yes MALT L Dom T BIRC3 MAML2 mastermind-like 2 (Drosophila) 84441 11 11q22-q23 yes salivary gland mucoepidermoid E Dom T "MECT1, CRTC3" MAP2K4 mitogen-activated protein kinase kinase 4 6416 17 17p11.2 yes "pancreatic, breast, colorectal" E Rec "D, Mis, N" MDM2 Mdm2 p53 binding protein homolog 4193 12 12q15 yes "sarcoma, glioma, colorectal, other" "M, O, E, L" Dom A MDM4 Mdm4 p53 binding protein homolog 4194 1 1q32 yes "GBM, bladder, retinoblastoma" M Dom A MDS1 myelodysplasia syndrome 1 2122 3 3q26 yes "MDS, AML" L Dom T RUNX1 MDS2 myelodysplastic syndrome 2 259283 1 1p36 yes MDS L Dom T ETV6 MECT1 mucoepidermoid translocated 1 23373 19 19p13 yes salivary gland mucoepidermoid E Dom T MAML2 MED12 mediator complex subunit 12 9968 X Xq13 yes uterine leiomyoma M Dom "M, S" Yes Opitz-Kaveggia Syndrome MEN1 multiple endocrine neoplasia type 1 gene 4221 11 11q13 yes yes "parathyroid tumors, Pancreatic neuroendocrine tumors" "parathyroid adenoma, pituitary adenoma, pancreatic islet cell, carcinoid" Multiple Endocrine Neoplasia Type 1 E Rec "D, Mis, N, F, S" MET met proto-oncogene (hepatocyte growth factor receptor) 4233 7 7q31 yes "papillary renal, head-neck squamous cell " papillary renal Familial Papillary Renal Cancer E Dom Mis MHC2TA MHC class II transactivator 4261 16 16p13 yes NHL L Dom T BCL6 MITF microphthalmia-associated transcription factor 4286 3 3p14.1 yes melanoma E Dom A yes "Waardenburg syndrome type 2, Tietz syndrome" MKL1 megakaryoblastic leukemia (translocation) 1 57591 22 22q13 yes acute megakaryocytic leukemia L Dom T RBM15 MLF1 myeloid leukemia factor 1 4291 3 3q25.1 yes AML L Dom T NPM1 MLH1 E.coli MutL homolog gene 4292 3 3p21.3 yes yes "colorectal, endometrial, ovarian, CNS" "colorectal, endometrial, ovarian, CNS" "Hereditary non-polyposis colorectal cancer, Turcot syndrome" "E, O" Rec "D, Mis, N, F, S" MLL "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 4297 11 11q23 yes "AML, ALL" L Dom "T, O" "MLL, MLLT1, MLLT2, MLLT3, MLLT4, MLLT7, MLLT10, MLLT6, ELL, EPS15, AF1Q, CREBBP, SH3GL1, FNBP1, PNUTL1, MSF, GPHN, GMPS, SSH3BP1, ARHGEF12, GAS7, FOXO3A, LAF4, LCX, SEPT6, LPP, CBFA2T1, GRAF, EP300, PICALM, HEAB" MLL2 myeloid/lymphoid or mixed-lineage leukemia 2 8085 12 12q12-q14 yes "medulloblastoma, renal" "O, E" Rec "N, F, Mis" MLL3 myeloid/lymphoid or mixed-lineage leukemia 3 58508 7 7q36.1 yes medulloblastoma O Rec N MLLT1 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 (ENL)" 4298 19 19p13.3 yes AL L Dom T MLL MLLT10 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10)" 8028 10 10p12 yes AL L Dom T "MLL, PICALM, CDK6" MLLT2 " myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2 (AF4)" 4299 4 4q21 yes AL L Dom T MLL MLLT3 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9)" 4300 9 9p22 yes ALL L Dom T MLL MLLT4 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 (AF6)" 4301 6 6q27 yes AL L Dom T MLL MLLT6 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 (AF17)" 4302 17 17q21 yes AL L Dom T MLL MLLT7 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 7 (AFX1)" 4303 X Xq13.1 yes AL L Dom T MLL MN1 meningioma (disrupted in balanced translocation) 1 4330 22 22q13 yes "AML, meningioma" "L, O" Dom T ETV6 MPL "myeloproliferative leukemia virus oncogene, thrombopoietin receptor" 4352 1 p34 yes yes MPD MPD Familial essential thrombocythemia L Dom Mis yes congenital amegakaryocytic thrombocytopenia MSF MLL septin-like fusion 10801 17 17q25 yes AML* L Dom T MLL MSH2 mutS homolog 2 (E. coli) 4436 2 2p22-p21 yes yes "colorectal, endometrial, ovarian" "colorectal, endometrial, ovarian" Hereditary non-polyposis colorectal cancer E Rec "D, Mis, N, F, S" MSH6 mutS homolog 6 (E. coli) 2956 2 2p16 yes yes colorectal "colorectal, endometrial, ovarian" Hereditary non-polyposis colorectal cancer E Rec "Mis, N, F, S" MSI2 musashi homolog 2 (Drosophila) 124540 17 17q23.2 yes CML L Dom T HOXA9 MSN moesin 4478 X Xq11.2-q12 yes ALCL L Dom T ALK MTCP1 mature T-cell proliferation 1 4515 X Xq28 yes T cell prolymphocytic leukemia L Dom T TRA@ MUC1 "mucin 1, transmembrane" 4582 1 1q21 yes B-NHL L Dom T IGH@ MUTYH mutY homolog (E. coli) 4595 1 1p34.3-1p32.1 yes colorectal Adenomatous polyposis coli E Rec Mis MYB v-myb myeloblastosis viral oncogene homolog 4602 6 6q22-23 yes adenoid cystic carcinoma E Dom T NFIB MYC v-myc myelocytomatosis viral oncogene homolog (avian) 4609 8 8q24.12-q24.13 yes "Burkitt lymphoma, amplified in other cancers, B-CLL" "L, E" Dom "A, T" "IGK@, BCL5, BCL7A , BTG1, TRA@, IGH@" MYCL1 "v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)" 4610 1 1p34.3 yes small cell lung E Dom A MYCN "v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)" 4613 2 2p24.1 yes neuroblastoma O Dom A MYD88 myeloid differentiation primary response gene (88) 4615 3 3p22 yes ABC-DLBCL L Dom Mis MYH11 "myosin, heavy polypeptide 11, smooth muscle" 4629 16 16p13.13-p13.12 yes AML L Dom T CBFB MYH9 "myosin, heavy polypeptide 9, non-muscle" 4627 22 22q13.1 yes ALCL L Dom T ALK yes "Deafness, autosomal dominant 17, Epstein syndrome, Fechtner syndrome, May-Hegglin anomaly, Sebastian syndrome" MYST4 MYST histone acetyltransferase (monocytic leukemia) 4 (MORF) 23522 10 10q22 yes AML L Dom T CREBBP NACA nascent-polypeptide-associated complex alpha polypeptide 4666 12 12q23-q24.1 yes NHL L Dom T BCL6 NBS1 Nijmegen breakage syndrome 1 (nibrin) 4683 8 8q21 yes "NHL, glioma, medulloblastoma, rhabdomyosarcoma" Nijmegen breakage syndrome "L, E, M, O" Rec "Mis, N, F" NCOA1 nuclear receptor coactivator 1 8648 2 2p23 yes alveolar rhadomyosarcoma M Dom T PAX3 NCOA2 nuclear receptor coactivator 2 (TIF2) 10499 8 8q13.1 yes AML L Dom T RUNXBP2 NCOA4 nuclear receptor coactivator 4 - PTC3 (ELE1) 8031 10 10q11.2 yes papillary thyroid E Dom T RET NDRG1 N-myc downstream regulated 1 10397 8 8q24.3 yes prostate E Dom T ERG NF1 neurofibromatosis type 1 gene 4763 17 17q12 yes yes "neurofibroma, glioma" "neurofibroma, glioma" Neurofibromatosis type 1 O Rec "D, Mis, N, F, S, O" NF2 neurofibromatosis type 2 gene 4771 22 22q12.2 yes yes "meningioma, acoustic neuroma, renal " "meningioma, acoustic neuroma" Neurofibromatosis type 2 O Rec "D, Mis, N, F, S, O" NFE2L2 nuclear factor (erythroid-derived 2)-like 2 (NRF2) 4780 2 2q31 yes "NSCLC, HNSCC" E Dom Mis NFIB nuclear factor I/B 4781 9 9p24.1 yes "adenoid cystic carcinoma, lipoma" E Dom T "MYB, HGMA2" NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 4791 10 10q24 yes B-NHL L Dom T IGH@ NIN ninein (GSK3B interacting protein) 51199 14 14q24 yes MPD L Dom T PDGFRB NKX2-1 NK2 homeobox 1 7080 14 14q13 yes NSCLC E Dom A NONO "non-POU domain containing, octamer-binding" 4841 X Xq13.1 yes papillary renal cancer E Dom T TFE3 NOTCH1 "Notch homolog 1, translocation-associated (Drosophila) (TAN1)" 4851 9 9q34.3 yes T-ALL L Dom "T, Mis, O" TRB@ NOTCH2 Notch homolog 2 4853 1 1p13-p11 yes "marginal zone lymphoma, DLBCL" L Dom "N, F, Mis" NPM1 "nucleophosmin (nucleolar phosphoprotein B23, numatrin)" 4869 5 5q35 yes "NHL, APL, AML" L Dom "T, F " "ALK, RARA, MLF1" NR4A3 "nuclear receptor subfamily 4, group A, member 3 (NOR1)" 8013 9 9q22 yes extraskeletal myxoid chondrosarcoma M Dom T EWSR1 NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 4893 1 1p13.2 yes "melanoma, MM, AML, thyroid" "L, E" Dom Mis NSD1 nuclear receptor binding SET domain protein 1 64324 5 5q35 yes AML L Dom T NUP98 yes Sotos Syndrome NTRK1 "neurotrophic tyrosine kinase, receptor, type 1" 4914 1 1q21-q22 yes papillary thyroid E Dom T "TPM3, TPR, TFG" NTRK3 "neurotrophic tyrosine kinase, receptor, type 3" 4916 15 15q25 yes "congenital fibrosarcoma, Secretory breast " "E, M" Dom T ETV6 NUMA1 nuclear mitotic apparatus protein 1 4926 11 11q13 yes APL L Dom T RARA NUP214 nucleoporin 214kDa (CAN) 8021 9 9q34.1 yes "AML, T-ALL" L Dom T "DEK, SET, ABL1" NUP98 nucleoporin 98kDa 4928 11 11p15 yes AML L Dom T "HOXA9, NSD1, WHSC1L1, DDX10, TOP1, HOXD13, PMX1, HOXA13, HOXD11, HOXA11, RAP1GDS1, HOXC11" NUT nuclear protien in testis 256646 15 q13 yes lethal midline carcinoma of young people E Dom T "BRD4, BRD3" OLIG2 oligodendrocyte lineage transcription factor 2 (BHLHB1) 10215 21 21q22.11 yes T-ALL L Dom T TRA@ OMD osteomodulin 4958 9 9q22.31 yes aneurysmal bone cysts M Dom T USP6 P2RY8 "purinergic receptor P2Y, G-protein coupled, 8" 286530 "X,Y" Xp22.3; Yp11.3 yes "B-ALL, Downs associated ALL" L Dom T CRLF2 PAFAH1B2 "platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa" 5049 11 11q23 yes MLCLS L Dom T IGH@ PALB2 partner and localizer of BRCA2 79728 16 16p12.1 yes "Wilms tumor, medulloblastoma, AML ,breast" "Fanconi anaemia N, breast cancer susceptibility " "L, O, E" Rec "F, N, Mis" PAX3 paired box gene 3 5077 2 2q35 yes alveolar rhabdomyosarcoma M Dom T "FOXO1A, NCOA1" yes Waardenburg syndrome; craniofacial-deafness-hand syndrome PAX5 paired box gene 5 (B-cell lineage specific activator protein) 5079 9 9p13 yes "NHL, ALL, B-ALL" L Dom "T, Mis, D, F, S" "IGH@, ETV6, PML, FOXP1, ZNF521, ELN" PAX7 paired box gene 7 5081 1 1p36.2-p36.12 yes alveolar rhabdomyosarcoma M Dom T FOXO1A PAX8 paired box gene 8 7849 2 2q12-q14 yes follicular thyroid E Dom T PPARG yes Thyroid dysgenesis PBRM1 polybromo 1 55193 3 3p21 yes "clear cell renal carcinoma, breast" E Rec "Mis, N, F, S, D, O" PBX1 pre-B-cell leukemia transcription factor 1 5087 1 1q23 yes "pre B-ALL, myoepithelioma" "L, M" Dom T "TCF3, EWSR1" PCM1 pericentriolar material 1 (PTC4) 5108 8 8p22-p21.3 yes "papillary thyroid, CML, MPD" "E, L" Dom T "RET, JAK2" PCSK7 proprotein convertase subtilisin/kexin type 7 9159 11 11q23.3 yes MLCLS L Dom T IGH@ PDE4DIP phosphodiesterase 4D interacting protein (myomegalin) 9659 1 1q12 yes MPD L Dom T PDGFRB PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) 5155 22 22q12.3-q13.1 yes DFSP M Dom T COL1A1 PDGFRA "platelet-derived growth factor, alpha-receptor" 5156 4 4q11-q13 yes "GIST, idiopathic hypereosinophilic syndrome" "L, M, O" Dom "Mis, O, T" FIP1L1 PDGFRB "platelet-derived growth factor receptor, beta polypeptide" 5159 5 5q31-q32 yes "MPD, AML, CMML, CML" L Dom T "ETV6, TRIP11, HIP1, RAB5EP, H4, NIN, HCMOGT-1, PDE4DIP" PER1 period homolog 1 (Drosophila) 5187 17 17p13.1-17p12 yes "AML, CMML" L Dom T ETV6 PHOX2B paired-like homeobox 2b 8929 4 4p12 yes yes neuroblastoma neuroblastoma familial neuroblastoma O Rec "Mis, F" yes congenital central hypoventilation syndrome PICALM phosphatidylinositol binding clathrin assembly protein (CALM) 8301 11 11q14 yes "TALL, AML, " L Dom T "MLLT10, MLL" PIK3CA "phosphoinositide-3-kinase, catalytic, alpha polypeptide" 5290 3 3q26.3 yes "colorectal, gastric, gliobastoma, breast" "E, O" Dom Mis PIK3R1 "phosphoinositide-3-kinase, regulatory subunit 1 (alpha)" 5295 5 5q13.1 yes "gliobastoma, ovarian, colorectal" "E, O" Rec "Mis, F, O" PIM1 pim-1 oncogene 5292 6 6p21.2 yes NHL L Dom T BCL6 PLAG1 pleiomorphic adenoma gene 1 5324 8 8q12 yes salivary adenoma E Dom T "TCEA1, LIFR, CTNNB1, CHCHD7" PML promyelocytic leukemia 5371 15 15q22 yes "APL, ALL" L Dom T "RARA, PAX5" PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 5378 2 2q31-q33 yes "colorectal, endometrial, ovarian" Hereditary non-polyposis colorectal cancer E Rec "Mis, N" PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 5395 7 7p22 yes "colorectal, endometrial, ovarian, medulloblastoma, glioma" "Hereditary non-polyposis colorectal cancer, Turcot syndrome" E Rec "Mis, N, F" PMX1 paired mesoderm homeo box 1 5396 1 1q24 yes AML L Dom T NUP98 PNUTL1 peanut-like 1 (Drosophila) 5413 22 22q11.2 yes AML L Dom T MLL POU2AF1 "POU domain, class 2, associating factor 1 (OBF1)" 5450 11 11q23.1 yes NHL L Dom T BCL6 POU5F1 "POU domain, class 5, transcription factor 1" 5460 6 6p21.31 yes sarcoma M Dom T EWSR1 PPARG "peroxisome proliferative activated receptor, gamma" 5468 3 3p25 yes follicular thyroid E Dom T PAX8 yes "Insulin resistance ; lipodystrophy, familial partial L;diabetes mellitus, insulin-resistantI, with acanthosis nigricans and hypertension" PPP2R1A "protein phosphatase 2, regulatory subunit A, alpha" 5518 19 19q13.41 yes clear cell ovarian carcinoma E Dom? Mis PRCC papillary renal cell carcinoma (translocation-associated) 5546 1 1q21.1 yes papillary renal E Dom T TFE3 PRDM1 "PR domain containing 1, with ZNF domain" 639 6 6q21 yes DLBCL L Rec "D, N, Mis, F, S" PRDM16 PR domain containing 16 63976 1 1p36.23-p33 yes "MDS, AML" L Dom T EVI1 PRF1 perforin 1 (pore forming protein) 5551 10 10q22 yes "various leukaemia, lymphoma" L Rec M Type 2 familial hemophagocytic lymphohistiocytosis PRKAR1A "protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)" 5573 17 17q23-q24 yes yes papillary thyroid "myxoma, endocrine, papillary thyroid" Carney complex "E, M" "Dom, Rec" "T, Mis, N, F, S" RET PRO1073 PRO1073 protein (ALPHA) 378938 11 11q31.1 yes renal cell carcinoma (childhood epithelioid) E Dom T TFEB PSIP2 PC4 and SFRS1 interacting protein 2 (LEDGF) 11168 9 9p22.2 yes AML L Dom T NUP98 PTCH Homolog of Drosophila Patched gene 5727 9 9q22.3 yes yes "skin basal cell , medulloblastoma" "skin basal cell, medulloblastoma" Nevoid Basal Cell Carcinoma Syndrome "E, M" Rec "Mis, N, F, S" PTEN phosphatase and tensin homolog gene 5728 10 10q23.3 yes yes "glioma, prostate, endometrial" "harmartoma, glioma, prostate, endometrial" "Cowden Syndrome, Bannayan-Riley-Ruvalcaba syndrome" "L, E, M, O" Rec "D, Mis, N, F, S" PTPN11 "protein tyrosine phosphatase, non-receptor type 11" 5781 12 12q24.1 yes "JMML, AML, MDS" L Dom Mis yes Noonan Syndrome RAB5EP "rabaptin, RAB GTPase binding effector protein 1 (RABPT5)" 9135 17 17p13 yes CMML L Dom T PDGFRB RAD51L1 RAD51-like 1 (S. cerevisiae) (RAD51B) 5890 14 14q23-q24.2 yes "lipoma, uterine leiomyoma" M Dom T HMGA2 RAF1 v-raf-1 murine leukemia viral oncogene homolog 1 5894 3 3p25 yes pilocytic astrocytoma M Dom T SRGAP3 RALGDS ral guanine nucleotide dissociation stimulator 5900 9 9q34.3 yes "PMBL, Hodgkin Lymphona, " L Dom T CIITA RANBP17 RAN binding protein 17 64901 5 5q34 yes ALL L Dom T TRD@ RAP1GDS1 "RAP1, GTP-GDP dissociation stimulator 1" 5910 4 4q21-q25 yes T-ALL L Dom T NUP98 RARA "retinoic acid receptor, alpha" 5914 17 17q12 yes APL L Dom T "PML, ZNF145, TIF1, NUMA1, NPM1" RB1 retinoblastoma gene 5925 13 13q14 yes yes "retinoblastoma, sarcoma, breast, small cell lung" "retinoblastoma, sarcoma, breast, small cell lung" Familial retinoblastoma "L, E, M, O" Rec "D, Mis, N, F, S" RBM15 RNA binding motif protein 15 64783 1 1p13 yes acute megakaryocytic leukemia L Dom T MKL1 RECQL4 RecQ protein-like 4 9401 8 8q24.3 yes "osteosarcoma, skin basal and sqamous cell" Rothmund-Thompson Syndrome M Rec "N, F, S" REL v-rel reticuloendotheliosis viral oncogene homolog (avian) 5966 2 2p13-p12 yes Hodgkin Lymphoma L Dom A RET ret proto-oncogene 5979 10 10q11.2 yes yes "medullary thyroid, papillary thyroid, pheochromocytoma" "medullary thyroid, papillary thyroid, pheochromocytoma" Multiple endocrine neoplasia 2A/2B "E, O" Dom "T, Mis, N, F" "H4, PRKAR1A, NCOA4, PCM1, GOLGA5, TRIM33, KTN1, TRIM27, HOOK3" yes Hirschsprung disease ROS1 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 6098 6 6q22 yes "glioblastoma, NSCLC" O Dom T "GOPC, ROS1" RPL22 ribosomal protein L22 (EAP) 6146 1 1p36.31 yes "AML, CML" L Dom T RUNX1 RPN1 ribophorin I 6184 3 3q21.3-q25.2 yes AML L Dom T EVI1 RUNDC2A RUN domain containing 2A 92017 16 16p13.13 yes "PMBL, Hodgkin Lymphona, " L Dom T CIITA RUNX1 runt-related transcription factor 1 (AML1) 861 21 21q22.3 yes "AML, preB- ALL, T-ALL" L Dom T "RPL22, MDS1, EVI1, CBFA2T3, CBFA2T1, ETV6, LAF4" RUNXBP2 runt-related transcription factor binding protein 2 (MOZ/ZNF220) 7994 8 8p11 yes AML L Dom T "CREBBP, NCOA2, EP300" SBDS Shwachman-Bodian-Diamond syndrome protein 51119 7 7q11 yes "AML, MDS" Schwachman-Diamond syndrome L Rec Gene Conversion SDH5 cytoband 11 open reading frame 79 54949 11 11q12.2 yes paraganglioma Familial paraganglioma M Rec M SDHB "succinate dehydrogenase complex, subunit B, iron sulfur (Ip)" 6390 1 1p36.1-p35 yes "paraganglioma, pheochromocytoma" Familial paraganglioma O Rec "Mis, N, F" SDHC "succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa" 6391 1 1q21 yes "paraganglioma, pheochromocytoma" Familial paraganglioma O Rec "Mis, N, F" SDHD "succinate dehydrogenase complex, subunit D, integral membrane protein" 6392 11 11q23 yes "paraganglioma, pheochromocytoma" Familial paraganglioma O Rec "Mis, N, F, S" SEPT6 septin 6 23157 X Xq24 yes AML L Dom T MLL SET SET translocation 6418 9 9q34 yes AML L Dom T NUP214 SETD2 SET domain containing 2 29072 3 3p21.31 yes clear cell renal carcinoma E Rec "N, F, S, Mis" SF3B1 "splicing factor 3b, subunit 1, 155kDa" 23451 2 2q33.1 yes myelodysplastic syndrome L Dom Mis SFPQ splicing factor proline/glutamine rich(polypyrimidine tract binding protein associated) 6421 1 1p34.3 yes papillary renal cell E Dom T TFE3 SFRS3 "splicing factor, arginine/serine-rich 3" 6428 6 6p21 yes follicular lymphoma L Dom T BCL6 SH3GL1 SH3-domain GRB2-like 1 (EEN) 6455 19 19p13.3 yes AL L Dom T MLL SIL TAL1 (SCL) interrupting locus 6491 1 1p32 yes T-ALL L Dom T TAL1 SLC45A3 "solute carrier family 45, member 3" 85414 1 1q32 yes prostate E Dom T "ETV1, ETV5, ELK4, ERG" SMARCA4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4" 6597 19 19p13.2 yes NSCLC E Rec "F, N, Mis" SMARCB1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1" 6598 22 22q11 yes yes malignant rhabdoid malignant rhabdoid Rhabdoid predisposition syndrome M Rec "D, N, F, S" SMO smoothened homolog (Drosophila) 6608 7 7q31-q32 yes skin basal cell E Dom Mis SOCS1 suppressor of cytokine signaling 1� 8651 16 16p13.13 yes "Hodgkin Lymphoma, PMBL" L Rec "F, O" SOX2 SRY (sex determining region Y)-box 2 6657 3 3q26.3-q27 yes "NSCLC, oesophageal squamous carcinoma" E Dom A yes MICROPHTHALMIA AND ESOPHAGEAL ATRESIA SYNDROME SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 9901 3 3p25.3 yes pilocytic astrocytoma M Dom T RAF1 SS18 "synovial sarcoma translocation, cytoband 18" 6760 18 18q11.2 yes synovial sarcoma M Dom T "SSX1, SSX2" SS18L1 synovial sarcoma translocation gene on cytoband 18-like 1 26039 20 20q13.3 yes synovial sarcoma M Dom T SSX1 SSH3BP1 spectrin SH3 domain binding protein 1 10006 10 10p11.2 yes AML L Dom T MLL SSX1 "synovial sarcoma, X breakpoint 1" 6756 X Xp11.23-p11.22 yes synovial sarcoma M Dom T SS18 SSX2 "synovial sarcoma, X breakpoint 2" 6757 X Xp11.23-p11.22 yes synovial sarcoma M Dom T SS18 SSX4 "synovial sarcoma, X breakpoint 4" 6759 X Xp11.23 yes synovial sarcoma M Dom T SS18 STK11 serine/threonine kinase 11 gene (LKB1) 6794 19 19p13.3 yes yes "NSCLC, pancreatic" "jejunal harmartoma, ovarian, testicular, pancreatic" Peutz-Jeghers syndrome "E, M, O" Rec "D, Mis, N, F, S" STL Six-twelve leukemia gene 7955 6 6q23 yes B-ALL L Dom T ETV6 SUFU suppressor of fused homolog (Drosophila) 51684 10 10q24.32 yes yes medulloblastoma medulloblastoma Medulloblastoma predisposition O Rec "D, F, S" SUZ12 suppressor of zeste 12 homolog (Drosophila) 23512 17 17q11.2 yes endometrial stromal tumours M Dom T JAZF1 SYK spleen tyrosine kinase 6850 9 9q22 yes "MDS, peripheral T-cell lymphoma" L Dom T "ETV6, ITK" TAF15 "TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa" 8148 17 17q11.1-q11.2 yes "extraskeletal myxoid chondrosarcomas, ALL" "L, M" Dom T "TEC, CHN1, ZNF384" TAL1 T-cell acute lymphocytic leukemia 1 (SCL) 6886 1 1p32 yes lymphoblastic leukemia/biphasic L Dom T "TRD@, SIL" TAL2 T-cell acute lymphocytic leukemia 2 6887 9 9q31 yes T-ALL L Dom T TRB@ TCEA1 "transcription elongation factor A (SII), 1" 6917 8 8q11.2 yes salivary adenoma E Dom T PLAG1 TCF1 "transcription factor 1, hepatic (HNF1)" 6927 12 12q24.2 yes yes "hepatic adenoma, hepatocellular ca" "hepatic adenoma, hepatocellular ca" Familial Hepatic Adenoma E Rec "Mis, F" yes "Maturity-onset diabetes of the young, TYPE III" TCF12 "transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)" 6938 15 15q21 yes extraskeletal myxoid chondrosarcoma M Dom T TEC TCF3 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) 6929 19 19p13.3 yes pre B-ALL L Dom T "PBX1, HLF, TFPT" TCF7L2 transcription factor 7-like 2 6934 10 10q25.3 yes colorectal E Dom T VTI1A TCL1A T-cell leukemia/lymphoma 1A 8115 14 14q32.1 yes T-CLL L Dom T TRA@ TCL6 T-cell leukemia/lymphoma 6 27004 14 14q32.1 yes T-ALL L Dom T TRA@ TET2 tet oncogene family member 2 54790 4 4q24 yes MDS L Rec "Mis N, F" TFE3 transcription factor binding to IGHM enhancer 3 7030 X Xp11.22 yes "papillary renal, alveolar soft part sarcoma, renal" E Dom T "SFPQ, ASPSCR1, PRCC, NONO, CLTC" TFEB transcription factor EB 7942 6 6p21 yes renal (childhood epithelioid) "E,M" Dom T ALPHA TFG TRK-fused gene 10342 3 3q11-q12 yes "papillary thyroid, ALCL, NSCLC" "E, L" Dom T "NTRK1, ALK" TFPT TCF3 (E2A) fusion partner (in childhood Leukemia) 29844 19 19q13 yes pre-B ALL L Dom T TCF3 TFRC "transferrin receptor (p90, CD71)" 7037 3 3q29 yes NHL L Dom T BCL6 THRAP3 thyroid hormone receptor associated protein 3 (TRAP150) 9967 1 1p34.3 yes aneurysmal bone cysts M Dom T USP6 TIF1 "transcriptional intermediary factor 1 (PTC6,TIF1A)" 8805 7 7q32-q34 yes APL L Dom T RARA TLX1 " T-cell leukemia, homeobox 1 (HOX11)" 3195 10 10q24 yes T-ALL L Dom T "TRB@, TRD@" TLX3 "T-cell leukemia, homeobox 3 (HOX11L2)" 30012 5 5q35.1 yes T-ALL L Dom T BCL11B TMPRSS2 "transmembrane protease, serine 2" 7113 21 21q22.3 yes prostate E Dom T "ERG, ETV1, ETV4, ETV5" TNFAIP3 "tumor necrosis factor, alpha-induced protein 3" 7128 6 6q23 yes "marginal zone B-cell lymphomas, Hodgkin's lymphoma, primary mediastinal B cell lymphoma" L Rec "D, N, F" TNFRSF14 "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)" 8764 1 1p36.32 yes follicular lymphoma L Rec "Mis, N, F" TNFRSF17 "tumor necrosis factor receptor superfamily, member 17" 608 16 16p13.1 yes intestinal T-cell lymphoma L Dom T IL2 TNFRSF6 "tumor necrosis factor receptor superfamily, member 6 (FAS)" 355 10 10q24.1 yes "TGCT, nasal NK/T lymphoma, skin squamous cell ca -burn scar-related" "L, E, O" Rec Mis yes Autoimmune lymphoproliferative syndrome TOP1 topoisomerase (DNA) I 7150 20 20q12-q13.1 yes AML* L Dom T NUP98 TP53 tumor protein p53 7157 17 17p13 yes yes "breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types" "breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types" Li-Fraumeni syndrome "L, E, M, O" Rec "Mis, N, F" TPM3 tropomyosin 3 7170 1 1q22-q23 yes "papillary thyroid, ALCL" "E, L" Dom T "NTRK1, ALK" TPM4 tropomyosin 4 7171 19 19p13.1 yes ALCL L Dom T ALK TPR translocated promoter region 7175 1 1q25 yes papillary thyroid E Dom T NTRK1 TRA@ T cell receptor alpha locus 6955 14 14q11.2 yes T-ALL L Dom T "ATL,OLIG2, MYC, TCL1A, TCL6, MTCP1, TCL6" TRB@ T cell receptor beta locus 6957 7 7q35 yes T-ALL L Dom T "HOX11, LCK, NOTCH1, TAL2, LYL1" TRD@ T cell receptor delta locus 6964 14 14q11 yes T-cell leukemia L Dom T "TAL1, HOX11, TLX1, LMO1, LMO2, RANBP17" TRIM27 tripartite motif-containing 27 5987 6 6p22 yes papillary thyroid E Dom T RET TRIM33 " tripartite motif-containing 33 (PTC7,TIF1G)" 51592 1 1p13 yes papillary thyroid E Dom T RET TRIP11 thyroid hormone receptor interactor 11 9321 14 14q31-q32 yes AML L Dom T PDGFRB TSC1 tuberous sclerosis 1 gene 7248 9 9q34 yes "hamartoma, renal cell" Tuberous sclerosis 1 "E, O" Rec "D, Mis, N, F, S" TSC2 tuberous sclerosis 2 gene 7249 16 16p13.3 yes "hamartoma, renal cell" Tuberous sclerosis 2 "E, O" Rec "D, Mis, N, F, S" TSHR thyroid stimulating hormone receptor 7253 14 14q31 yes yes toxic thyroid adenoma thyroid adenoma E Dom Mis yes Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism TTL tubulin tyrosine ligase 150465 2 2q13 yes ALL L Dom T ETV6 USP6 ubiquitin specific peptidase 6 (Tre-2 oncogene) 9098 17 17p13 yes aneurysmal bone cysts M Dom T "COL1A1, CDH11, ZNF9, OMD" VHL von Hippel-Lindau syndrome gene 7428 3 3p25 yes yes "renal, hemangioma, pheochromocytoma" "renal, hemangioma, pheochromocytoma" von Hippel-Lindau syndrome "E, M, O" Rec "D, Mis, N, F, S" VTI1A vesicle transport through interaction with t-SNAREs homolog 1A 143187 10 10q25.2 yes colorectal E Dom T TCF7L2 WAS Wiskott-Aldrich syndrome 7454 X Xp11.23-p11.22 lymphoma Wiskott-Aldrich syndrome L X-linked recessive "Mis, N, F, S" WHSC1 Wolf-Hirschhorn syndrome candidate 1(MMSET) 7468 4 4p16.3 yes MM L Dom T IGH@ WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 (NSD3) 54904 8 8p12 yes AML L Dom T NUP98 WIF1 WNT inhibitory factor 1 11197 12 12q14.3 yes pleomorphic salivary gland adenoma E Dom T HMGA2 WRN Werner syndrome (RECQL2) 7486 8 8p12-p11.2 yes "osteosarcoma, meningioma, others" Werner Syndrome "L, E, M, O" Rec "Mis, N, F, S" WT1 Wilms tumour 1 gene 7490 11 11p13 yes yes "Wilms, desmoplastic small round cell tumor" Wilms "Denys-Drash syndrome, Frasier syndrome, Familial Wilms tumor" O Rec "D, Mis, N, F, S" EWSR1 WTX family with sequence similarity 123B (FAM123B) 139285 X Xq11.1 yes Wilms tumour O Rec "F, D, N, Mis" XPA "xeroderma pigmentosum, complementation group A" 7507 9 9q22.3 yes "skin basal cell, skin squamous cell, melanoma" Xeroderma pigmentosum (A) E Rec "Mis, N, F, S" XPC "xeroderma pigmentosum, complementation group C" 7508 3 3p25 yes "skin basal cell, skin squamous cell, melanoma" Xeroderma pigmentosum (C) E Rec "Mis, N, F, S" XPO1 "exportin 1 (CRM1 homolog, yeast)" 7514 2 2p15 yes CLL L Dom Mis ZNF145 zinc finger protein 145 (PLZF) 7704 11 11q23.1 yes APL L Dom T RARA ZNF198 zinc finger protein 198 7750 13 13q11-q12 yes "MPD, NHL" L Dom T FGFR1 ZNF278 zinc finger protein 278 (ZSG) 23598 22 22q12-q14 yes Ewing sarcoma M Dom T EWSR1 ZNF331 zinc finger protein 331 55422 19 19q13.3-q13.4 yes follicular thyroid adenoma E Dom T ? ZNF384 zinc finger protein 384 (CIZ/NMP4) 171017 12 12p13 yes ALL L Dom T "EWSR1, TAF15 " ZNF521 zinc finger protein 521 25925 18 18q11.2 yes ALL L Dom T PAX5 ZNF9 zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) 7555 3 3q21 yes aneurysmal bone cysts M Dom T USP6 ZNFN1A1 "zinc finger protein, subfamily 1A, 1 (Ikaros)" 10320 7 7p12 yes "ALL, DLBCL" L Dom T BCL6 \ No newline at end of file diff --git a/core/src/main/resources/sample_data/genes/uniprot_id_mapping.txt b/core/src/main/resources/sample_data/genes/uniprot_id_mapping.txt deleted file mode 100644 index 7ccb00b9d1c..00000000000 --- a/core/src/main/resources/sample_data/genes/uniprot_id_mapping.txt +++ /dev/null @@ -1,27859 +0,0 @@ -1 P04217 -2 P01023 -9 F5H5R8 -9 P18440 -9 Q400J6 -10 A4Z6T7 -10 P11245 -12 P01011 -13 P22760 -14 Q13685 -15 F1T0I5 -15 Q16613 -16 P49588 -18 P80404 -19 B2RUU2 -19 B7XCW9 -19 O95477 -20 Q9BZC7 -21 Q4LE27 -21 Q6P5P9 -21 Q99758 -22 O75027 -23 A2BF75 -23 Q2L6I2 -23 Q8NE71 -24 P78363 -24 Q6AI28 -25 P00519 -25 Q59FK4 -26 P19801 -27 P42684 -28 P16442 -29 B3KW89 -29 F5H8B3 -29 Q12979 -29 Q6ZT60 -30 G5E935 -30 P09110 -30 Q96CA6 -31 B2ZZ90 -31 Q13085 -31 Q7Z5W8 -32 O00763 -33 P28330 -34 P11310 -35 E5KSD5 -35 P16219 -36 P45954 -36 Q5SQN6 -37 P49748 -38 P24752 -39 Q9BWD1 -40 E9PBX2 -40 Q16515 -41 P78348 -43 P22303 -47 G3XAI4 -47 P53396 -48 P21399 -49 P10323 -50 Q99798 -51 A8KAA0 -51 B4DK61 -51 F5GYQ8 -51 Q15067 -52 B5MCC7 -52 P24666 -52 Q59EH3 -53 E9PCI1 -53 P11117 -54 P13686 -55 P15309 -56 P26436 -58 P68133 -59 D2JYH4 -59 P62736 -60 P60709 -60 Q1KLZ0 -70 B3KPP5 -70 P68032 -71 P63261 -72 B4E315 -72 E9PG30 -72 P63267 -81 O43707 -86 O96019 -87 P12814 -87 Q1HE25 -88 P35609 -89 Q08043 -90 D3DPA4 -90 Q04771 -91 P36896 -92 P27037 -93 Q13705 -94 P37023 -95 C9J6I6 -95 C9J9D8 -95 C9JWD4 -95 Q03154 -97 A6NDV8 -97 P07311 -98 P14621 -100 P00813 -101 B4DVM6 -101 Q14C66 -102 O14672 -103 P55265 -104 P78563 -104 Q4AE77 -105 Q9NS39 -107 Q08828 -107 Q59FG4 -107 Q8NFM5 -108 Q08462 -108 Q71UM8 -109 B3KT86 -109 O60266 -111 B7Z2C7 -111 B7Z8A6 -111 O95622 -112 O43306 -113 P51828 -114 P40145 -114 Q4F7X0 -115 O60503 -116 P18509 -117 B7ZLA7 -117 B8ZZK3 -117 P41586 -117 Q17S10 -118 A2A3N8 -118 P35611 -118 Q86XM2 -119 B4DM17 -119 P35612 -119 Q05DK5 -120 Q5VU08 -120 Q9UEY8 -123 Q6FHZ7 -123 Q99541 -124 P07327 -125 P00325 -126 P00326 -127 P08319 -128 P11766 -128 Q6IRT1 -130 P28332 -130 Q8IUN7 -131 A8MVN9 -131 P40394 -132 B7Z783 -132 B7Z800 -132 P55263 -132 Q5JQ10 -133 P35318 -134 P30542 -135 B3KVQ4 -135 P29274 -136 P29275 -140 P33765 -140 Q5QNY7 -140 Q6P2N6 -141 P54922 -142 P09874 -143 Q9UKK3 -146 B0ZBE0 -146 P25100 -147 P35368 -148 B0ZBD3 -148 P35348 -150 P08913 -151 A2RUS0 -151 P18089 -152 P18825 -152 Q4W594 -153 P08588 -154 P07550 -155 A8KAG8 -155 P13945 -156 P25098 -157 P35626 -157 Q8N433 -158 P30566 -159 P30520 -160 O95782 -161 O94973 -162 Q10567 -162 Q86X54 -163 P63010 -163 Q96EL6 -164 O43747 -164 Q8IY97 -165 Q8IUX7 -166 Q08117 -166 Q14CJ1 -166 Q8WY48 -167 P54107 -173 P43652 -174 P02771 -175 P20933 -176 E7ENV9 -176 E7EX88 -177 A7Y2U9 -177 B4DNX3 -177 Q15109 -177 Q3L1R5 -177 Q3L1R6 -177 Q3L1R7 -177 Q3L1R8 -177 Q3L1S0 -178 P35573 -181 C6SUN5 -181 O00253 -182 P78504 -182 Q99740 -183 B0ZBE2 -183 B2R5S1 -183 P01019 -185 P30556 -185 Q53YY0 -186 P50052 -187 B2RDH3 -187 B3KQN4 -187 P35414 -189 P21549 -190 F1D8P4 -190 P51843 -191 B3KUN3 -191 F5H737 -191 P23526 -196 P35869 -197 P02765 -199 O43904 -199 P55008 -199 Q4V347 -199 Q9UIV4 -202 B3KPT0 -202 Q9Y4K1 -203 P00568 -203 Q6FGX9 -204 P54819 -205 P27144 -207 B0LPE5 -207 B3KVH4 -207 P31749 -208 B4DG79 -208 P31751 -210 P13716 -210 Q6ZMU0 -211 P13196 -211 Q5JAM2 -212 A8K3F0 -212 A8K6C4 -212 P22557 -212 Q5JZF5 -213 P02768 -214 B3KNN9 -214 B4DTU0 -214 Q13740 -214 Q6PEY4 -215 P33897 -216 P00352 -217 B4DW54 -217 E7EUE5 -217 P05091 -218 A8K828 -218 P30838 -218 Q6PKA6 -219 P30837 -220 P47895 -221 A3FMP9 -221 P43353 -222 P48448 -223 B9EKV4 -223 P49189 -224 P51648 -224 Q6I9T3 -225 Q9UBJ2 -226 P04075 -229 P05062 -230 P09972 -231 P15121 -238 B6D4Y2 -238 Q9UM73 -239 P18054 -240 P09917 -241 P20292 -242 O75342 -244 P13928 -244 Q5VT79 -246 P16050 -247 O15296 -248 P09923 -249 B7Z387 -249 B7Z4Y6 -249 P05186 -250 P05187 -251 P10696 -257 O95076 -258 Q546D7 -258 Q9NP70 -259 P02760 -262 P17707 -262 Q5VXN4 -265 Q99217 -266 Q99218 -267 Q9UKV5 -268 P03971 -269 E9PGD2 -269 F8W1D2 -269 Q16671 -269 Q647K2 -270 B2RAM1 -270 F2Z3B3 -270 P23109 -270 Q5TF02 -271 Q01433 -272 A0AUX0 -272 B7Z2S2 -272 B7Z763 -272 Q01432 -273 P49418 -274 O00499 -274 Q9BTH3 -275 B4DE61 -275 B4DJQ0 -275 E9PBG1 -275 P48728 -275 Q96IG6 -276 P04745 -276 Q6NSB3 -277 P04745 -278 P04745 -279 P04746 -280 P19961 -283 P03950 -284 Q15389 -284 Q5HYA0 -285 O15123 -286 A0PJN8 -286 B3KX39 -286 E5RFL7 -286 P16157 -286 Q53ER1 -287 Q01484 -288 B1AQT2 -288 B4DIL1 -288 E9PE32 -288 Q12955 -288 Q7Z3G4 -288 Q8NAK2 -288 Q9H0P5 -290 P15144 -290 Q59E93 -291 P12235 -292 P05141 -292 Q6NVC0 -293 P12236 -293 Q6I9V5 -301 P04083 -301 Q5TZZ9 -302 P07355 -306 P12429 -307 P09525 -307 Q6LES2 -308 P08758 -309 B7Z8A7 -309 E9PGK1 -309 P08133 -310 B2R657 -310 P20073 -311 P50995 -311 Q5T0G8 -312 P27216 -313 B7Z490 -313 P28039 -314 O75106 -316 Q06278 -317 O14727 -318 P50583 -319 Q13790 -320 Q02410 -321 E9PGI4 -321 Q59G28 -321 Q5XKC0 -321 Q99767 -322 O00213 -323 B4DJ88 -323 B4DSL4 -323 B4E2F2 -323 E9PG87 -323 Q92870 -324 B7Z2B6 -324 P25054 -324 Q4LE70 -325 P02743 -326 B2RP50 -326 O43918 -327 P13798 -328 P27695 -328 Q5TZP7 -329 Q13490 -330 Q13489 -331 B2R9R2 -331 P98170 -332 O15392 -333 P51693 -334 B3KXX9 -334 B4E3I5 -334 Q06481 -335 P02647 -336 P02652 -338 P04114 -338 Q59HB3 -338 Q7Z7Q0 -339 P41238 -341 B2R526 -341 P02654 -343 O94778 -344 P02655 -345 A3KPE2 -345 P02656 -346 P55056 -347 P05090 -348 P02649 -350 P02749 -351 B4DGD0 -351 E9PG40 -351 P05067 -353 G5E9J2 -353 P07741 -354 C9JXH3 -354 G3V0H4 -354 G3XAE3 -354 P07288 -354 Q15096 -354 Q546G3 -355 P25445 -355 Q5T9P3 -356 P48023 -356 Q53ZZ1 -357 Q13796 -358 E7EM69 -358 E9PC21 -358 F5GY19 -358 P29972 -359 P41181 -360 Q92482 -361 F1DSG4 -361 P55087 -362 P55064 -363 Q13520 -364 O14520 -366 O43315 -367 F1D8N5 -367 P10275 -368 A2RRN8 -368 O95255 -368 Q8TCY8 -369 P10398 -372 B0YIW5 -372 B4E1X2 -372 E9PEU4 -372 P48444 -373 P36406 -374 P15514 -374 Q5U026 -375 P84077 -377 P61204 -378 P18085 -379 P49703 -381 A4D0Z3 -381 P84085 -382 P62330 -382 Q6FGZ2 -383 P05089 -384 P78540 -387 P61586 -387 Q9BVT0 -388 P62745 -389 P08134 -390 P61587 -391 P84095 -391 Q6ICQ8 -392 Q07960 -393 P98171 -393 Q86UY3 -394 Q13017 -395 O43182 -395 Q59HG6 -396 B4DUV9 -396 P52565 -397 P52566 -398 F1T0H7 -398 Q99819 -399 Q15669 -399 Q6ICP4 -400 P40616 -401 O14813 -402 G3V184 -402 P36404 -402 Q53YD8 -403 P36405 -405 A8K6P0 -405 B0AZM1 -405 P27540 -406 A2I2N6 -406 O00327 -407 P36575 -408 B7Z1Q3 -408 P49407 -409 G5E980 -409 P32121 -410 B4DVI5 -410 B7XD04 -410 F8WCC8 -410 P15289 -411 A8K4A0 -411 P15848 -411 Q8N322 -412 P08842 -414 P51689 -415 P51690 -416 P54793 -417 P52961 -419 Q13508 -420 Q93070 -421 O00192 -427 A8K0B6 -427 E9PDS0 -427 Q13510 -427 Q53H01 -427 Q96AS2 -429 P50553 -430 Q99929 -432 F8W7M3 -432 P07306 -432 Q6FGQ5 -433 D3DTN0 -433 P07307 -433 Q7Z4G9 -434 P42127 -435 E7EMI0 -435 E9PE48 -435 P04424 -438 P46597 -439 O43681 -440 B4DXZ1 -440 E9PCI3 -440 E9PCX6 -440 P08243 -443 P45381 -443 Q6FH48 -444 B4DIC9 -444 B4DQ07 -444 B4E2K4 -444 B7ZM95 -444 B7ZM96 -444 F5H667 -444 Q12797 -444 Q6NXR7 -444 Q8TB28 -444 Q9H291 -445 P00966 -445 Q5T6L4 -460 E9PFR8 -460 O14525 -460 Q96BL7 -462 P01008 -463 Q15911 -463 Q8N2Y6 -466 P18846 -467 P18847 -467 Q5VTZ2 -467 Q6ICQ9 -467 Q7Z566 -467 Q8WYM6 -468 P18848 -468 Q96AQ3 -471 P31939 -472 Q13315 -473 Q9P2R6 -474 Q92858 -475 O00244 -476 B7Z2T5 -476 B7Z3U6 -476 F5H3A1 -476 P05023 -477 P50993 -478 B3KNQ8 -478 P13637 -479 B4E0R9 -479 P54707 -480 Q13733 -481 A3KLL5 -481 P05026 -482 P14415 -483 P54709 -486 P54710 -487 O14983 -487 Q7Z675 -488 P16615 -489 A8K9K1 -489 G3XAE1 -489 Q93084 -490 P20020 -491 Q01814 -491 Q4J699 -491 Q4LE63 -492 Q16720 -493 B1APW5 -493 P23634 -495 P20648 -495 Q658V6 -496 P51164 -498 P25705 -501 B4DMA0 -501 E7EPT3 -501 P49419 -506 P06576 -509 P36542 -509 Q6I9V2 -509 Q8TAS0 -513 P30049 -514 P56381 -515 P24539 -515 Q08ET0 -516 P05496 -516 Q6FIH7 -517 Q06055 -518 P48201 -521 P56385 -522 P18859 -522 Q6IB54 -522 Q6NZ59 -523 P38606 -525 P15313 -526 P21281 -527 P27449 -528 P21283 -529 A8MUE4 -529 A8MUN4 -529 P36543 -529 Q53Y06 -533 D3DPY5 -533 Q6IB32 -533 Q99437 -534 B5MEF0 -534 O95670 -534 Q2L6F8 -534 Q5HYU8 -534 Q6NVJ2 -535 B7Z3B7 -535 Q53ET5 -535 Q53X12 -535 Q5CZH6 -535 Q93050 -537 Q15904 -537 Q9H0C7 -538 B4DRW0 -538 Q04656 -538 Q762B6 -539 P48047 -540 B7ZLR4 -540 P35670 -545 Q13535 -546 P46100 -547 B0I1S5 -547 F5H045 -547 Q12756 -549 Q13825 -550 Q9Y679 -551 P01185 -552 P37288 -553 P47901 -554 P30518 -558 P30530 -563 P25311 -566 P20160 -567 P61769 -570 Q14032 -571 O14867 -571 Q6ICU0 -572 Q6FH21 -572 Q92934 -573 Q99933 -574 Q13072 -575 E9PBK0 -575 O14514 -576 O60241 -577 O60242 -578 Q16611 -579 P78367 -580 A0AVN2 -580 Q99728 -581 Q07812 -582 Q8NFJ9 -583 Q9BXC9 -585 Q96RK4 -586 B3KY27 -586 B7Z2M5 -586 B7Z5L0 -586 F5H5E4 -586 P54687 -586 Q68DQ7 -587 O15382 -590 P06276 -593 B4DP47 -593 P12694 -593 Q59EI3 -594 P21953 -594 Q9BQL0 -595 P24385 -595 Q6FI00 -596 C9JHD5 -596 P10415 -597 Q16548 -597 Q86W13 -598 Q07817 -598 Q5TE63 -599 Q92843 -602 P20749 -604 B5B0A5 -604 B8PSA7 -604 P41182 -605 Q4VC05 -607 O00512 -608 Q02223 -610 Q9UL51 -611 P03999 -611 Q0PJU0 -613 P11274 -617 Q9Y276 -622 Q02338 -623 P46663 -624 P30411 -627 P23560 -629 P00751 -631 B7Z999 -631 Q12934 -632 P02818 -633 P21810 -634 P13688 -634 Q3KRG8 -635 Q93088 -636 F8W113 -636 Q96G01 -637 A8ASI8 -637 B2ZP79 -637 B3KT21 -637 P55957 -638 Q13323 -639 B4DW27 -639 O75626 -639 Q86WM7 -640 P51451 -640 Q05D26 -640 Q96IN1 -641 P54132 -642 Q13867 -643 A0N0R2 -643 A8K647 -643 P32302 -643 Q2YD84 -644 P53004 -645 P30043 -646 Q01954 -648 P35226 -649 P13497 -650 C8C060 -650 P12643 -651 P12645 -652 P12644 -652 Q53XC5 -653 P22003 -654 P22004 -654 Q4VBA3 -655 A8K571 -655 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Q9NZ47 -100653325 Q9H5S2 -100653328 Q6ZUQ7 -100653358 D6R9T1 -100653515 Q96MC4 -100820829 P0CAP1 diff --git a/core/src/main/resources/sample_data/genes/universalSomaticGeneWhitelist.txt b/core/src/main/resources/sample_data/genes/universalSomaticGeneWhitelist.txt deleted file mode 100644 index 5152e8343dd..00000000000 --- a/core/src/main/resources/sample_data/genes/universalSomaticGeneWhitelist.txt +++ /dev/null @@ -1,8 +0,0 @@ -PTEN -PIK3CA -KRAS -BRAF -NF1 -RB1 -TP53 -EGFR diff --git a/core/src/main/resources/sample_data/network/cell-map.sif b/core/src/main/resources/sample_data/network/cell-map.sif deleted file mode 100644 index 30c26bfe2db..00000000000 --- a/core/src/main/resources/sample_data/network/cell-map.sif +++ /dev/null @@ -1,2027 +0,0 @@ -ABI1 INTERACTS_WITH SOS1 -ABL1 INTERACTS_WITH TP73 -ACTL6A INTERACTS_WITH RELA -AES INTERACTS_WITH AR -AKT1 IN_SAME_COMPONENT APPL1 -AKT1 INTERACTS_WITH APPL1 -AKT1 INTERACTS_WITH AR -AKT1 INTERACTS_WITH CHUK -AKT1 INTERACTS_WITH RAF1 -AKT1 STATE_CHANGE AR -AKT1 STATE_CHANGE CHUK -AKT1 STATE_CHANGE FOXO1 -AKT1 STATE_CHANGE MST1R -AKT1 STATE_CHANGE RAF1 -AKT1 STATE_CHANGE STAT1 -AKT2 INTERACTS_WITH CHUK -AKT2 STATE_CHANGE CHUK -ALPL INTERACTS_WITH MAP3K14 -ALPL INTERACTS_WITH TRAF2 -ALPL INTERACTS_WITH TRAF3 -ANAPC10 IN_SAME_COMPONENT ANAPC1 -ANAPC10 IN_SAME_COMPONENT ANAPC2 -ANAPC10 IN_SAME_COMPONENT ANAPC4 -ANAPC10 IN_SAME_COMPONENT ANAPC5 -ANAPC10 IN_SAME_COMPONENT CDC23 -ANAPC10 IN_SAME_COMPONENT CDC27 -ANAPC10 INTERACTS_WITH FZR1 -ANAPC1 IN_SAME_COMPONENT ANAPC10 -ANAPC1 IN_SAME_COMPONENT ANAPC2 -ANAPC1 IN_SAME_COMPONENT ANAPC4 -ANAPC1 IN_SAME_COMPONENT ANAPC5 -ANAPC1 IN_SAME_COMPONENT CDC23 -ANAPC1 IN_SAME_COMPONENT CDC27 -ANAPC1 INTERACTS_WITH FZR1 -ANAPC2 IN_SAME_COMPONENT ANAPC1 -ANAPC2 IN_SAME_COMPONENT ANAPC10 -ANAPC2 IN_SAME_COMPONENT ANAPC4 -ANAPC2 IN_SAME_COMPONENT ANAPC5 -ANAPC2 IN_SAME_COMPONENT CDC23 -ANAPC2 IN_SAME_COMPONENT CDC27 -ANAPC2 INTERACTS_WITH FZR1 -ANAPC4 IN_SAME_COMPONENT ANAPC1 -ANAPC4 IN_SAME_COMPONENT ANAPC10 -ANAPC4 IN_SAME_COMPONENT ANAPC2 -ANAPC4 IN_SAME_COMPONENT ANAPC5 -ANAPC4 IN_SAME_COMPONENT CDC23 -ANAPC4 IN_SAME_COMPONENT CDC27 -ANAPC4 INTERACTS_WITH FZR1 -ANAPC5 IN_SAME_COMPONENT ANAPC1 -ANAPC5 IN_SAME_COMPONENT ANAPC10 -ANAPC5 IN_SAME_COMPONENT ANAPC2 -ANAPC5 IN_SAME_COMPONENT ANAPC4 -ANAPC5 IN_SAME_COMPONENT CDC23 -ANAPC5 IN_SAME_COMPONENT CDC27 -ANAPC5 INTERACTS_WITH FZR1 -APC IN_SAME_COMPONENT AXIN1 -APC IN_SAME_COMPONENT CTNNB1 -APC INTERACTS_WITH AXIN1 -APC INTERACTS_WITH CTNNB1 -APC INTERACTS_WITH DLG4 -APC INTERACTS_WITH Fzd2 -APC INTERACTS_WITH GSK3B -APC INTERACTS_WITH JUP -APC INTERACTS_WITH TFAP2A -APH1A IN_SAME_COMPONENT APH1B -APH1A IN_SAME_COMPONENT NCSTN -APH1A IN_SAME_COMPONENT PSEN1 -APH1A IN_SAME_COMPONENT PSEN2 -APH1A IN_SAME_COMPONENT PSENEN -APH1A STATE_CHANGE APP -APH1A STATE_CHANGE JAG2 -APH1B IN_SAME_COMPONENT APH1A -APH1B IN_SAME_COMPONENT NCSTN -APH1B IN_SAME_COMPONENT PSEN1 -APH1B IN_SAME_COMPONENT PSEN2 -APH1B IN_SAME_COMPONENT PSENEN -APH1B STATE_CHANGE APP -APH1B STATE_CHANGE JAG2 -APPL1 IN_SAME_COMPONENT AKT1 -APPL1 INTERACTS_WITH AKT1 -APPL1 INTERACTS_WITH AR -APPL2 INTERACTS_WITH MTA2 -APPL2 INTERACTS_WITH RAB5A -APPL2 INTERACTS_WITH RBBP7 -ARAF STATE_CHANGE MAP2K1 -ARF4 INTERACTS_WITH EGFR -AR IN_SAME_COMPONENT RNF4 -AR INTERACTS_WITH AES -AR INTERACTS_WITH AKT1 -AR INTERACTS_WITH APPL1 -AR INTERACTS_WITH ATF2 -AR INTERACTS_WITH BAG1 -AR INTERACTS_WITH BRCA1 -AR INTERACTS_WITH CAV1 -AR INTERACTS_WITH CCND1 -AR INTERACTS_WITH CCNE1 -AR INTERACTS_WITH CCNH -AR INTERACTS_WITH CDC37 -AR INTERACTS_WITH CDK9 -AR INTERACTS_WITH COX5B -AR INTERACTS_WITH CREBBP -AR INTERACTS_WITH CTNNB1 -AR INTERACTS_WITH EGFR -AR INTERACTS_WITH ESR1 -AR INTERACTS_WITH ETV5 -AR INTERACTS_WITH FHL2 -AR INTERACTS_WITH FLNA -AR INTERACTS_WITH GTF2F1 -AR INTERACTS_WITH GTF2F2 -AR INTERACTS_WITH GTF2H1 -AR INTERACTS_WITH IL6ST -AR INTERACTS_WITH JUN -AR INTERACTS_WITH KAT2B -AR INTERACTS_WITH MDM2 -AR INTERACTS_WITH MNAT1 -AR INTERACTS_WITH MYST2 -AR INTERACTS_WITH NCOA1 -AR INTERACTS_WITH NCOA2 -AR INTERACTS_WITH NCOA3 -AR INTERACTS_WITH NCOR2 -AR INTERACTS_WITH NR0B2 -AR INTERACTS_WITH NR2C2 -AR INTERACTS_WITH NR5A1 -AR INTERACTS_WITH NSD1 -AR INTERACTS_WITH PA2G4 -AR INTERACTS_WITH PAK6 -AR INTERACTS_WITH PATZ1 -AR INTERACTS_WITH PIAS1 -AR INTERACTS_WITH PIAS3 -AR INTERACTS_WITH PIAS4 -AR INTERACTS_WITH PNRC1 -AR INTERACTS_WITH POU2F2 -AR INTERACTS_WITH PRMT1 -AR INTERACTS_WITH PRPF6 -AR INTERACTS_WITH PSMC3IP -AR INTERACTS_WITH PTEN -AR INTERACTS_WITH RAC3 -AR INTERACTS_WITH RAN -AR INTERACTS_WITH RANBP9 -AR INTERACTS_WITH RB1 -AR INTERACTS_WITH RCHY1 -AR INTERACTS_WITH RELA -AR INTERACTS_WITH RNF14 -AR INTERACTS_WITH RNF4 -AR INTERACTS_WITH RUNX2 -AR INTERACTS_WITH SMAD4 -AR INTERACTS_WITH SP1 -AR INTERACTS_WITH SPDEF -AR INTERACTS_WITH SRY -AR INTERACTS_WITH STAT3 -AR INTERACTS_WITH STUB1 -AR INTERACTS_WITH SVIL -AR INTERACTS_WITH TGFB1I1 -AR INTERACTS_WITH TGIF1 -AR INTERACTS_WITH TMF1 -AR INTERACTS_WITH UBE2I -AR INTERACTS_WITH UBE3A -ARRB2 INTERACTS_WITH DVL2 -ARRB2 INTERACTS_WITH FZD4 -ARRB2 INTERACTS_WITH TGFBR3 -ASAP1 INTERACTS_WITH SH3KBP1 -ATF2 INTERACTS_WITH AR -ATF2 INTERACTS_WITH SMAD4 -AXIN1 IN_SAME_COMPONENT APC -AXIN1 IN_SAME_COMPONENT CTNNB1 -AXIN1 IN_SAME_COMPONENT DVL3 -AXIN1 INTERACTS_WITH APC -AXIN1 INTERACTS_WITH CTNNB1 -Axin1 INTERACTS_WITH Dvl1 -AXIN1 INTERACTS_WITH GSK3B -AXIN1 INTERACTS_WITH LRP6 -AXIN1 INTERACTS_WITH MAP3K4 -AXIN1 INTERACTS_WITH PPP2CA -AXIN1 INTERACTS_WITH PPP2R5B -AXIN1 INTERACTS_WITH RUNX2 -AZI2 INTERACTS_WITH IKBKE -AZI2 INTERACTS_WITH TBK1 -BAG1 INTERACTS_WITH AR -BAG4 INTERACTS_WITH TNFRSF1A -BCL7A INTERACTS_WITH RELB -BCL9 IN_SAME_COMPONENT CTNNB1 -BIRC2 IN_SAME_COMPONENT RIPK1 -BIRC2 IN_SAME_COMPONENT TRADD -BIRC2 IN_SAME_COMPONENT TRAF2 -BIRC2 INTERACTS_WITH TNFRSF1A -BIRC2 INTERACTS_WITH TNFRSF1B -BIRC2 INTERACTS_WITH TRAF2 -BIRC2 STATE_CHANGE TRAF2 -BIRC3 IN_SAME_COMPONENT TRAF2 -BIRC3 INTERACTS_WITH TNFRSF1B -BRCA1 INTERACTS_WITH AR -BTRC INTERACTS_WITH SMAD4 -BTRC STATE_CHANGE SMAD4 -CAMK2B IN_SAME_COMPONENT CAMK2D -CAMK2B INTERACTS_WITH MAP3K7 -CAMK2B STATE_CHANGE MAP3K7 -CAMK2D IN_SAME_COMPONENT CAMK2B -CAMK2D INTERACTS_WITH MAP3K7 -CAMK2D STATE_CHANGE MAP3K7 -CAPN3 STATE_CHANGE NFKBIA -CASP10 IN_SAME_COMPONENT FADD -CASP10 IN_SAME_COMPONENT RIPK1 -CASP10 IN_SAME_COMPONENT TRADD -CASP10 IN_SAME_COMPONENT TRAF2 -CASP10 INTERACTS_WITH CASP8 -CASP2 INTERACTS_WITH CRADD -CASP3 INTERACTS_WITH CFLAR -CASP7 STATE_CHANGE TNFRSF1A -CASP8AP2 INTERACTS_WITH TRAF2 -CASP8 INTERACTS_WITH CASP10 -CASP8 INTERACTS_WITH FADD -CASP8 INTERACTS_WITH RIPK1 -CASP8 INTERACTS_WITH TRADD -CASP8 INTERACTS_WITH TRAF2 -CASP8 STATE_CHANGE MAP3K14 -CASP8 STATE_CHANGE RIPK1 -CASP9 INTERACTS_WITH MAPK1 -CASP9 INTERACTS_WITH MAPK3 -CAV1 IN_SAME_COMPONENT TRAF2 -CAV1 INTERACTS_WITH AR -CAV1 INTERACTS_WITH DNM1 -CAV1 INTERACTS_WITH EGFR -CAV1 INTERACTS_WITH GRB7 -CAV1 INTERACTS_WITH MAPK1 -CAV1 INTERACTS_WITH MAPK3 -CAV1 INTERACTS_WITH TNFRSF1B -CAV1 INTERACTS_WITH TRAF2 -CAV2 INTERACTS_WITH NCK1 -CAV2 INTERACTS_WITH RASA1 -CBLB INTERACTS_WITH EGFR -CBLB STATE_CHANGE EGFR -CBLC INTERACTS_WITH CRK -CBLC INTERACTS_WITH EGFR -CBLC INTERACTS_WITH SPRY2 -CBL IN_SAME_COMPONENT KIT -CBL INTERACTS_WITH CRKL -CBL INTERACTS_WITH EGFR -CBL INTERACTS_WITH KIT -CBL INTERACTS_WITH PIK3R1 -CBL INTERACTS_WITH PIK3R2 -CBL INTERACTS_WITH SH3KBP1 -CBL INTERACTS_WITH SHC1 -CBL STATE_CHANGE EGFR -CCNA2 INTERACTS_WITH CDK2 -CCNB1 IN_SAME_COMPONENT CDK1 -CCNB1 INTERACTS_WITH CDK1 -CCNB1 INTERACTS_WITH PTCH1 -CCNB2 IN_SAME_COMPONENT CDK1 -CCNB2 INTERACTS_WITH TGFBR2 -CCND1 IN_SAME_COMPONENT CDK4 -CCND1 IN_SAME_COMPONENT CDK6 -CCND1 INTERACTS_WITH AR -CCND1 STATE_CHANGE RB1 -CCND1 STATE_CHANGE RBL1 -CCND1 STATE_CHANGE RBL2 -CCNE1 IN_SAME_COMPONENT CDK2 -CCNE1 INTERACTS_WITH AR -CCNE1 INTERACTS_WITH CDK2 -CCNE1 INTERACTS_WITH RBL1 -CCNH IN_SAME_COMPONENT GTF2H1 -CCNH INTERACTS_WITH AR -CD151 INTERACTS_WITH ITGA6 -CD3EAP INTERACTS_WITH NFKBIB -CDC16 INTERACTS_WITH SKIL -CDC16 INTERACTS_WITH SMAD2 -CDC23 IN_SAME_COMPONENT ANAPC1 -CDC23 IN_SAME_COMPONENT ANAPC10 -CDC23 IN_SAME_COMPONENT ANAPC2 -CDC23 IN_SAME_COMPONENT ANAPC4 -CDC23 IN_SAME_COMPONENT ANAPC5 -CDC23 IN_SAME_COMPONENT CDC27 -CDC23 INTERACTS_WITH FZR1 -CDC25A INTERACTS_WITH ROCK1 -CDC25C STATE_CHANGE CDK1 -CDC27 IN_SAME_COMPONENT ANAPC1 -CDC27 IN_SAME_COMPONENT ANAPC10 -CDC27 IN_SAME_COMPONENT ANAPC2 -CDC27 IN_SAME_COMPONENT ANAPC4 -CDC27 IN_SAME_COMPONENT ANAPC5 -CDC27 IN_SAME_COMPONENT CDC23 -CDC27 INTERACTS_WITH FZR1 -CDC27 INTERACTS_WITH SKIL -CDC27 INTERACTS_WITH SMAD2 -CDC34 STATE_CHANGE NFKBIA -CDC37 IN_SAME_COMPONENT CHUK -CDC37 IN_SAME_COMPONENT HSP90AA1 -CDC37 INTERACTS_WITH AR -CDC37 INTERACTS_WITH CHUK -CDC37 INTERACTS_WITH IKBKE -CDC37 INTERACTS_WITH MAP3K14 -CDC37 INTERACTS_WITH MAP3K3 -CDC37 INTERACTS_WITH NR2C2 -CDC37 INTERACTS_WITH TBK1 -CDC37 REACTS_WITH CDC37 -CDC37 REACTS_WITH CHUK -CDC37 REACTS_WITH HSP90AA1 -CDC42 INTERACTS_WITH MAP3K4 -CDC42 INTERACTS_WITH TNK2 -CDH1 INTERACTS_WITH CTNNB1 -CDK1 IN_SAME_COMPONENT CCNB1 -CDK1 IN_SAME_COMPONENT CCNB2 -CDK1 INTERACTS_WITH CCNB1 -CDK1 INTERACTS_WITH PTCH1 -CDK1 INTERACTS_WITH TGFBR2 -CDK2 IN_SAME_COMPONENT CCNE1 -CDK2 INTERACTS_WITH CCNA2 -CDK2 INTERACTS_WITH CCNE1 -CDK2 INTERACTS_WITH CDKN1A -CDK2 INTERACTS_WITH ID2 -CDK2 INTERACTS_WITH ID3 -CDK2 INTERACTS_WITH RBL1 -CDK2 STATE_CHANGE ID2 -CDK2 STATE_CHANGE ID3 -CDK4 IN_SAME_COMPONENT CCND1 -CDK4 IN_SAME_COMPONENT CDK6 -CDK4 STATE_CHANGE RB1 -CDK4 STATE_CHANGE RBL1 -CDK4 STATE_CHANGE RBL2 -CDK6 IN_SAME_COMPONENT CCND1 -CDK6 IN_SAME_COMPONENT CDK4 -CDK6 STATE_CHANGE RB1 -CDK6 STATE_CHANGE RBL2 -CDK9 INTERACTS_WITH AR -CDKN1A INTERACTS_WITH CDK2 -CDX1 INTERACTS_WITH LEF1 -CEBPA INTERACTS_WITH MYC -CEBPB INTERACTS_WITH MYC -CFLAR INTERACTS_WITH CASP3 -CFLAR INTERACTS_WITH FADD -CFLAR INTERACTS_WITH NFKB1 -CFLAR INTERACTS_WITH TRAF2 -CHUK IN_SAME_COMPONENT CDC37 -CHUK IN_SAME_COMPONENT HSP90AA1 -CHUK INTERACTS_WITH AKT1 -CHUK INTERACTS_WITH AKT2 -CHUK INTERACTS_WITH CDC37 -CHUK INTERACTS_WITH CREBBP -CHUK INTERACTS_WITH FKBP5 -CHUK INTERACTS_WITH HSP90AA1 -CHUK INTERACTS_WITH HSP90AB1 -CHUK INTERACTS_WITH MAP3K14 -CHUK INTERACTS_WITH NFKB1 -CHUK INTERACTS_WITH NFKB2 -CHUK INTERACTS_WITH NFKBIA -CHUK INTERACTS_WITH NFKBIB -CHUK INTERACTS_WITH NLRP4 -CHUK INTERACTS_WITH PEBP1 -CHUK INTERACTS_WITH PTPN11 -CHUK REACTS_WITH CDC37 -CHUK REACTS_WITH CHUK -CHUK REACTS_WITH HSP90AA1 -CHUK STATE_CHANGE CHUK -CHUK STATE_CHANGE HIST3H3 -CHUK STATE_CHANGE NFKB1 -CHUK STATE_CHANGE NFKBIA -CHUK STATE_CHANGE NFKBIB -CHUK STATE_CHANGE RELA -CIR1 INTERACTS_WITH HDAC2 -CIR1 INTERACTS_WITH RBPJ -CIR1 INTERACTS_WITH SAP30 -CITED1 INTERACTS_WITH CREBBP -CITED1 INTERACTS_WITH EP300 -CITED1 INTERACTS_WITH HSPA8 -CITED1 INTERACTS_WITH SMAD4 -CLCA1 INTERACTS_WITH ITGB4 -CLCA2 INTERACTS_WITH ITGB4 -Cntn1 INTERACTS_WITH Notch2 -COL17A1 INTERACTS_WITH DSP -COL17A1 INTERACTS_WITH ITGA6 -COL17A1 INTERACTS_WITH ITGB4 -COL17A1 INTERACTS_WITH PLEC -COMMD1 INTERACTS_WITH NFKBIA -COMMD1 INTERACTS_WITH RELA -COPS5 INTERACTS_WITH SMAD4 -COPS5 STATE_CHANGE SMAD4 -COX5B INTERACTS_WITH AR -CRADD INTERACTS_WITH CASP2 -CRADD INTERACTS_WITH RIPK1 -CREBBP INTERACTS_WITH AR -CREBBP INTERACTS_WITH CHUK -CREBBP INTERACTS_WITH CITED1 -CREBBP INTERACTS_WITH RELA -CREBBP INTERACTS_WITH SNIP1 -CRK INTERACTS_WITH CBLC -CRK INTERACTS_WITH KIT -CRK INTERACTS_WITH PIK3R1 -CRK INTERACTS_WITH SOS1 -CRKL INTERACTS_WITH CBL -CRKL INTERACTS_WITH DOK1 -CRKL INTERACTS_WITH KIT -CRKL INTERACTS_WITH PIK3R1 -CRKL INTERACTS_WITH PIK3R2 -CSF2RB INTERACTS_WITH KIT -CSK INTERACTS_WITH EGFR -CSNK1D STATE_CHANGE CTNNB1 -Csnk1e INTERACTS_WITH Dvl1 -CSNK1E INTERACTS_WITH DVL3 -Csnk1e STATE_CHANGE Dvl1 -CSNK2A1 IN_SAME_COMPONENT CSNK2A2 -CSNK2A1 IN_SAME_COMPONENT CSNK2B -CSNK2A1 STATE_CHANGE RELA -CSNK2A2 IN_SAME_COMPONENT CSNK2A1 -CSNK2A2 IN_SAME_COMPONENT CSNK2B -CSNK2A2 STATE_CHANGE RELA -CSNK2B IN_SAME_COMPONENT CSNK2A1 -CSNK2B IN_SAME_COMPONENT CSNK2A2 -CSNK2B STATE_CHANGE RELA -CTCF INTERACTS_WITH SMAD4 -CTNNB1 IN_SAME_COMPONENT APC -CTNNB1 IN_SAME_COMPONENT AXIN1 -CTNNB1 IN_SAME_COMPONENT BCL9 -CTNNB1 IN_SAME_COMPONENT DVL3 -CTNNB1 INTERACTS_WITH APC -CTNNB1 INTERACTS_WITH AR -CTNNB1 INTERACTS_WITH AXIN1 -CTNNB1 INTERACTS_WITH CDH1 -Ctnnb1 INTERACTS_WITH Ctnnbip1 -CTNNB1 INTERACTS_WITH CUL1 -CTNNB1 INTERACTS_WITH DVL3 -CTNNB1 INTERACTS_WITH FHL2 -CTNNB1 INTERACTS_WITH GSK3B -CTNNB1 INTERACTS_WITH JUP -CTNNB1 INTERACTS_WITH LEF1 -CTNNB1 INTERACTS_WITH NLK -CTNNB1 INTERACTS_WITH NR5A1 -CTNNB1 INTERACTS_WITH PIN1 -CTNNB1 INTERACTS_WITH PPP2CA -CTNNB1 INTERACTS_WITH RUVBL1 -CTNNB1 INTERACTS_WITH SALL1 -CTNNB1 INTERACTS_WITH SKP1 -CTNNB1 INTERACTS_WITH SMAD2 -CTNNB1 INTERACTS_WITH SMAD4 -CTNNB1 INTERACTS_WITH SOX1 -CTNNB1 INTERACTS_WITH TFAP2A -CTNNB1 INTERACTS_WITH TGFBR2 -Ctnnbip1 INTERACTS_WITH Ctnnb1 -CTNND1 INTERACTS_WITH PTPN6 -CUL1 IN_SAME_COMPONENT FBXW11 -CUL1 IN_SAME_COMPONENT RBX1 -CUL1 IN_SAME_COMPONENT SKP1 -CUL1 IN_SAME_COMPONENT SKP2 -CUL1 INTERACTS_WITH CTNNB1 -CUL1 INTERACTS_WITH FBXW7 -CUL1 INTERACTS_WITH NFKBIA -CUL1 INTERACTS_WITH NFKBIB -CUL1 INTERACTS_WITH NFKBIE -CUL1 INTERACTS_WITH SKP1 -CUL1 STATE_CHANGE CTNNB1 -CUL1 STATE_CHANGE TCF3 -CYLD INTERACTS_WITH TRAF2 -CYLD INTERACTS_WITH TRAIP -CYLD STATE_CHANGE TRAF2 -CYLD STATE_CHANGE TRAF6 -DAAM1 INTERACTS_WITH RHOA -DAB2 INTERACTS_WITH DVL3 -DAB2 INTERACTS_WITH SMAD2 -DAB2 INTERACTS_WITH TGFBR2 -DAP INTERACTS_WITH TNFRSF1A -DAXX INTERACTS_WITH TGFBR2 -DDX3X INTERACTS_WITH NFKB2 -DHH INTERACTS_WITH HHIP -DHH INTERACTS_WITH PTCH1 -DHH INTERACTS_WITH PTCH2 -DKK1 INTERACTS_WITH LRP5 -DKK1 INTERACTS_WITH LRP6 -DLG4 IN_SAME_COMPONENT Fzd2 -DLG4 INTERACTS_WITH APC -DLL1 INTERACTS_WITH NOTCH3 -DNM1 INTERACTS_WITH CAV1 -DNM1 INTERACTS_WITH SH3GL3 -DOK1 IN_SAME_COMPONENT LYN -DOK1 INTERACTS_WITH CRKL -DOK1 INTERACTS_WITH FES -DOK1 INTERACTS_WITH FGR -DOK1 INTERACTS_WITH HCK -DOK1 INTERACTS_WITH INPP5D -DOK1 INTERACTS_WITH KIT -DOK1 INTERACTS_WITH LYN -DOK1 INTERACTS_WITH PIK3R1 -DOK1 INTERACTS_WITH PIK3R2 -DOK1 INTERACTS_WITH PLCG1 -DOK1 INTERACTS_WITH RASA1 -DOK1 INTERACTS_WITH SHC1 -DOK1 INTERACTS_WITH SRC -DOK1 INTERACTS_WITH YES1 -DPF2 INTERACTS_WITH RELB -DSP INTERACTS_WITH COL17A1 -DTX1 INTERACTS_WITH EP300 -Dvl1 INTERACTS_WITH Axin1 -Dvl1 INTERACTS_WITH Csnk1e -DVL1 INTERACTS_WITH DVL3 -Dvl1 INTERACTS_WITH Smad2 -Dvl1 INTERACTS_WITH Vangl2 -DVL2 INTERACTS_WITH ARRB2 -DVL2 INTERACTS_WITH FZD4 -DVL2 INTERACTS_WITH PRKCA -DVL2 INTERACTS_WITH PRKCB -DVL2 INTERACTS_WITH PRKCG -DVL2 INTERACTS_WITH RUNX2 -DVL3 IN_SAME_COMPONENT AXIN1 -DVL3 IN_SAME_COMPONENT CTNNB1 -DVL3 INTERACTS_WITH CSNK1E -DVL3 INTERACTS_WITH CTNNB1 -DVL3 INTERACTS_WITH DAB2 -DVL3 INTERACTS_WITH DVL1 -DVL3 INTERACTS_WITH PPP2CA -DYRK1A INTERACTS_WITH GLI1 -DYRK1A STATE_CHANGE GLI1 -E2F4 IN_SAME_COMPONENT RBL1 -E2F4 IN_SAME_COMPONENT RBL2 -E2F4 IN_SAME_COMPONENT TFDP1 -E2F4 IN_SAME_COMPONENT TFDP2 -E2F4 INTERACTS_WITH RB1 -E2F4 INTERACTS_WITH RBL1 -E2F4 INTERACTS_WITH RBL2 -E2F4 INTERACTS_WITH SMAD4 -E2F4 INTERACTS_WITH TFDP1 -E2F4 INTERACTS_WITH TFDP2 -E2F4 REACTS_WITH E2F4 -E2F4 REACTS_WITH RBL1 -E2F4 REACTS_WITH RBL2 -E2F4 REACTS_WITH TFDP2 -EGF INTERACTS_WITH EGFR -EGFR INTERACTS_WITH AR -EGFR INTERACTS_WITH ARF4 -EGFR INTERACTS_WITH CAV1 -EGFR INTERACTS_WITH CBL -EGFR INTERACTS_WITH CBLB -EGFR INTERACTS_WITH CBLC -EGFR INTERACTS_WITH CSK -EGFR INTERACTS_WITH EGF -EGFR INTERACTS_WITH EPS8 -EGFR INTERACTS_WITH ERRFI1 -EGFR INTERACTS_WITH HIST3H3 -EGFR INTERACTS_WITH HTT -EGFR INTERACTS_WITH INPPL1 -EGFR INTERACTS_WITH KRT17 -EGFR INTERACTS_WITH KRT18 -EGFR INTERACTS_WITH KRT7 -EGFR INTERACTS_WITH KRT8 -EGFR INTERACTS_WITH MAP2K1 -EGFR INTERACTS_WITH MAP3K14 -EGFR INTERACTS_WITH MAPK1 -EGFR INTERACTS_WITH NCK1 -EGFR INTERACTS_WITH NCK2 -EGFR INTERACTS_WITH PIK3C2B -EGFR INTERACTS_WITH PITPNA -EGFR INTERACTS_WITH PLEC -EGFR INTERACTS_WITH PLSCR1 -EGFR INTERACTS_WITH PRKAR1A -EGFR INTERACTS_WITH PRKCA -EGFR INTERACTS_WITH PTK6 -EGFR INTERACTS_WITH PTPN11 -EGFR INTERACTS_WITH PTPN6 -EGFR INTERACTS_WITH RASA1 -EGFR INTERACTS_WITH RGS16 -EGFR INTERACTS_WITH RIPK1 -EGFR INTERACTS_WITH SH3BGRL -EGFR INTERACTS_WITH SOCS1 -EGFR INTERACTS_WITH SOCS3 -EGFR INTERACTS_WITH SOS1 -EGFR INTERACTS_WITH STAT1 -EGFR INTERACTS_WITH STAT5A -EGFR INTERACTS_WITH STAT5B -EGFR INTERACTS_WITH VAV1 -EGFR STATE_CHANGE EGFR -EGFR STATE_CHANGE GAB1 -EGFR STATE_CHANGE PTPN6 -EGFR STATE_CHANGE RASA1 -EGFR STATE_CHANGE RGS16 -EGFR STATE_CHANGE STAT1 -EGFR STATE_CHANGE STAT3 -EGFR STATE_CHANGE STAT5B -EID2 INTERACTS_WITH SMAD2 -EID2 INTERACTS_WITH SMAD4 -EIF3I INTERACTS_WITH TGFBR2 -EIF4EBP1 INTERACTS_WITH EIF4E -EIF4E INTERACTS_WITH EIF4EBP1 -ELF3 STATE_CHANGE EGFR -ELF3 STATE_CHANGE MYC -ELK1 INTERACTS_WITH ID2 -ELK1 INTERACTS_WITH ID3 -ELK1 INTERACTS_WITH MAPK3 -ELK3 INTERACTS_WITH ID2 -ELK4 INTERACTS_WITH ID2 -ELK4 INTERACTS_WITH ID3 -ENG INTERACTS_WITH TGFBR2 -EP300 INTERACTS_WITH CITED1 -EP300 INTERACTS_WITH DTX1 -EP300 INTERACTS_WITH MAML1 -EP300 INTERACTS_WITH NCOA1 -EP300 INTERACTS_WITH SMAD2 -EP300 INTERACTS_WITH SMAD4 -EP300 INTERACTS_WITH SMAD7 -EP300 INTERACTS_WITH SNIP1 -EP300 STATE_CHANGE AR -EP300 STATE_CHANGE CTNNB1 -EPN1 INTERACTS_WITH EPS15 -EPOR INTERACTS_WITH KIT -EPS15 INTERACTS_WITH EPN1 -EPS8 INTERACTS_WITH EGFR -ERBB2 INTERACTS_WITH ITGB4 -ERBB2 STATE_CHANGE ERBB2 -ERRFI1 INTERACTS_WITH EGFR -ESR1 INTERACTS_WITH AR -ESR1 INTERACTS_WITH SMAD2 -ESR1 INTERACTS_WITH SMAD4 -ETS1 INTERACTS_WITH SP1 -ETV5 INTERACTS_WITH AR -FADD IN_SAME_COMPONENT CASP10 -FADD IN_SAME_COMPONENT RIPK1 -FADD IN_SAME_COMPONENT TRADD -FADD IN_SAME_COMPONENT TRAF2 -FADD INTERACTS_WITH CASP8 -FADD INTERACTS_WITH CFLAR -FADD INTERACTS_WITH STAT1 -FAF1 INTERACTS_WITH RELA -FANCD2 INTERACTS_WITH TNFRSF1A -FANCD2 INTERACTS_WITH TNFRSF1B -FBL INTERACTS_WITH MAP3K14 -FBXW11 IN_SAME_COMPONENT CUL1 -FBXW11 IN_SAME_COMPONENT SKP1 -FBXW11 INTERACTS_WITH NFKB1 -FBXW11 INTERACTS_WITH NFKBIA -FBXW11 STATE_CHANGE NFKBIA -FBXW7 INTERACTS_WITH CUL1 -FBXW7 INTERACTS_WITH HEY1 -FBXW7 INTERACTS_WITH SKP1 -FES INTERACTS_WITH DOK1 -FGR INTERACTS_WITH DOK1 -FHL2 INTERACTS_WITH AR -FHL2 INTERACTS_WITH CTNNB1 -FKBP5 INTERACTS_WITH CHUK -FKBP5 INTERACTS_WITH IKBKE -FKBP5 INTERACTS_WITH NR2C2 -FLNA INTERACTS_WITH AR -FLNA INTERACTS_WITH TRAF2 -FOSB INTERACTS_WITH JUND -FOS IN_SAME_COMPONENT JUN -FOS INTERACTS_WITH JUN -FOS INTERACTS_WITH JUND -FOS INTERACTS_WITH SMAD4 -Foxg1 INTERACTS_WITH Foxh1 -Foxh1 INTERACTS_WITH Foxg1 -FOXH1 INTERACTS_WITH SMAD2 -FOXO1 INTERACTS_WITH SMAD4 -FOXO3 INTERACTS_WITH SMAD2 -FOXO3 INTERACTS_WITH SMAD4 -FOXO4 INTERACTS_WITH SMAD4 -FYN INTERACTS_WITH ITGB4 -FYN INTERACTS_WITH KHDRBS1 -FYN INTERACTS_WITH KIT -FYN STATE_CHANGE DOK1 -FYN STATE_CHANGE ITGB4 -FYN STATE_CHANGE KHDRBS1 -FZD1 INTERACTS_WITH LRP1 -FZD1 INTERACTS_WITH LRP6 -FZD1 INTERACTS_WITH WNT1 -FZD1 INTERACTS_WITH WNT2 -FZD1 INTERACTS_WITH WNT3 -FZD1 INTERACTS_WITH WNT3A -Fzd2 IN_SAME_COMPONENT DLG4 -Fzd2 INTERACTS_WITH APC -FZD4 IN_SAME_COMPONENT MAGI3 -FZD4 INTERACTS_WITH ARRB2 -FZD4 INTERACTS_WITH DVL2 -FZD4 INTERACTS_WITH MAGI3 -FZD5 INTERACTS_WITH LRP6 -FZD5 INTERACTS_WITH WNT7A -Fzd6 INTERACTS_WITH Wnt4 -FZD7 INTERACTS_WITH MAGI3 -FZR1 INTERACTS_WITH ANAPC1 -FZR1 INTERACTS_WITH ANAPC10 -FZR1 INTERACTS_WITH ANAPC2 -FZR1 INTERACTS_WITH ANAPC4 -FZR1 INTERACTS_WITH ANAPC5 -FZR1 INTERACTS_WITH CDC23 -FZR1 INTERACTS_WITH CDC27 -FZR1 INTERACTS_WITH SKIL -G3BP2 INTERACTS_WITH NFKBIA -G3BP2 INTERACTS_WITH RELA -GAB1 INTERACTS_WITH MAP3K3 -GAB1 INTERACTS_WITH PIK3CA -GAB1 INTERACTS_WITH PIK3CB -GAB1 INTERACTS_WITH PIK3CG -GAB1 INTERACTS_WITH PIK3R2 -GAB1 INTERACTS_WITH PIK3R3 -GAB1 INTERACTS_WITH PTPN11 -GATA1 INTERACTS_WITH HEY1 -GLI1 INTERACTS_WITH DYRK1A -GLI1 INTERACTS_WITH STK36 -GLI1 INTERACTS_WITH SUFU -GLI3 INTERACTS_WITH STK36 -GLI3 INTERACTS_WITH SUFU -GRAP INTERACTS_WITH KIT -Grb10 INTERACTS_WITH Kit -GRB14 INTERACTS_WITH MAP3K14 -GRB7 INTERACTS_WITH CAV1 -GRB7 INTERACTS_WITH KIT -GRB7 INTERACTS_WITH MAP3K14 -GSK3B INTERACTS_WITH APC -GSK3B INTERACTS_WITH AXIN1 -GSK3B INTERACTS_WITH CTNNB1 -GSK3B INTERACTS_WITH NOTCH2 -GSK3B STATE_CHANGE APC -GSK3B STATE_CHANGE CTNNB1 -GSK3B STATE_CHANGE MAP1B -GSK3B STATE_CHANGE NOTCH2 -GTF2F1 INTERACTS_WITH AR -GTF2F2 INTERACTS_WITH AR -GTF2H1 IN_SAME_COMPONENT CCNH -GTF2H1 INTERACTS_WITH AR -GTF2I INTERACTS_WITH NFKB2 -HAT1 STATE_CHANGE HIST3H3 -HCK INTERACTS_WITH DOK1 -HCK INTERACTS_WITH KIT -Hdac1 INTERACTS_WITH Rbl2 -HDAC1 INTERACTS_WITH SMAD2 -HDAC1 INTERACTS_WITH TGIF1 -HDAC2 INTERACTS_WITH CIR1 -HDAC2 INTERACTS_WITH RELA -HDAC6 INTERACTS_WITH RELB -Hes1 INTERACTS_WITH Hey2 -HEY1 INTERACTS_WITH FBXW7 -HEY1 INTERACTS_WITH GATA1 -Hey2 INTERACTS_WITH Hes1 -Hgs INTERACTS_WITH Smad2 -HHIP INTERACTS_WITH DHH -HHIP INTERACTS_WITH IHH -HIP1 INTERACTS_WITH HTT -HIPK2 INTERACTS_WITH NLK -HIPK2 STATE_CHANGE NLK -HIST3H3 INTERACTS_WITH EGFR -HOXA9 INTERACTS_WITH SMAD4 -HRAS INTERACTS_WITH RAF1 -HRAS INTERACTS_WITH SHOC2 -HSP90AA1 IN_SAME_COMPONENT CDC37 -HSP90AA1 IN_SAME_COMPONENT CHUK -HSP90AA1 INTERACTS_WITH CHUK -HSP90AA1 INTERACTS_WITH IKBKE -HSP90AA1 INTERACTS_WITH MAP3K14 -HSP90AA1 INTERACTS_WITH MAP3K3 -HSP90AA1 INTERACTS_WITH NR2C2 -HSP90AA1 INTERACTS_WITH RIPK1 -HSP90AA1 INTERACTS_WITH TBK1 -HSP90AA1 REACTS_WITH CDC37 -HSP90AA1 REACTS_WITH CHUK -HSP90AA1 REACTS_WITH HSP90AA1 -HSP90AB1 INTERACTS_WITH CHUK -HSP90AB1 INTERACTS_WITH IKBKE -HSP90AB1 INTERACTS_WITH MAP3K14 -HSP90AB1 INTERACTS_WITH MAP3K3 -HSP90AB1 INTERACTS_WITH NR2C2 -HSP90AB1 INTERACTS_WITH TBK1 -HSPA8 INTERACTS_WITH CITED1 -HSPB1 INTERACTS_WITH NFKBIA -HSPB1 STATE_CHANGE NFKBIA -HTT INTERACTS_WITH EGFR -HTT INTERACTS_WITH HIP1 -HTT INTERACTS_WITH RASA1 -ID2 INTERACTS_WITH CDK2 -ID2 INTERACTS_WITH ELK1 -ID2 INTERACTS_WITH ELK3 -ID2 INTERACTS_WITH ELK4 -ID2 INTERACTS_WITH MSC -ID2 INTERACTS_WITH RB1 -ID3 INTERACTS_WITH CDK2 -ID3 INTERACTS_WITH ELK1 -ID3 INTERACTS_WITH ELK4 -Id3 INTERACTS_WITH Myog -Id3 INTERACTS_WITH Tcf12 -ID4 INTERACTS_WITH MYOD1 -IHH INTERACTS_WITH HHIP -IHH INTERACTS_WITH PTCH1 -IHH INTERACTS_WITH PTCH2 -IKBKAP INTERACTS_WITH NFKBIA -IKBKE INTERACTS_WITH AZI2 -IKBKE INTERACTS_WITH CDC37 -IKBKE INTERACTS_WITH FKBP5 -IKBKE INTERACTS_WITH HSP90AA1 -IKBKE INTERACTS_WITH HSP90AB1 -IL6ST INTERACTS_WITH AR -INPP5D INTERACTS_WITH DOK1 -INPP5D INTERACTS_WITH KIT -INPPL1 INTERACTS_WITH EGFR -IQGAP2 INTERACTS_WITH NFKBIB -IQGAP2 INTERACTS_WITH RELA -ITGA6 INTERACTS_WITH CD151 -ITGA6 INTERACTS_WITH COL17A1 -ITGA6 INTERACTS_WITH ITGB4 -ITGA6 INTERACTS_WITH RPSA -ITGB4 INTERACTS_WITH CLCA1 -ITGB4 INTERACTS_WITH CLCA2 -ITGB4 INTERACTS_WITH COL17A1 -ITGB4 INTERACTS_WITH ERBB2 -ITGB4 INTERACTS_WITH FYN -ITGB4 INTERACTS_WITH ITGA6 -ITGB4 INTERACTS_WITH MET -ITGB4 INTERACTS_WITH PIK3CA -ITGB4 INTERACTS_WITH PIK3CB -ITGB4 INTERACTS_WITH PIK3CG -ITGB4 INTERACTS_WITH PIK3R2 -ITGB4 INTERACTS_WITH PIK3R3 -ITGB4 INTERACTS_WITH PLEC -ITGB4 INTERACTS_WITH PTK2 -ITGB4 INTERACTS_WITH SHC1 -ITGB4 INTERACTS_WITH VIM -ITGB4 INTERACTS_WITH YES1 -ITGB4 INTERACTS_WITH YWHAB -ITGB4 INTERACTS_WITH YWHAQ -JAG2 INTERACTS_WITH NOTCH3 -JAK1 INTERACTS_WITH STAT1 -JAK1 INTERACTS_WITH STAT3 -JAK2 INTERACTS_WITH KIT -JAK2 INTERACTS_WITH PTPN12 -JAK2 INTERACTS_WITH STAT1 -JAK2 INTERACTS_WITH STAT3 -JUNB INTERACTS_WITH SMAD4 -JUND INTERACTS_WITH FOS -JUND INTERACTS_WITH FOSB -JUND INTERACTS_WITH SMAD4 -JUN IN_SAME_COMPONENT FOS -JUN INTERACTS_WITH AR -JUN INTERACTS_WITH FOS -JUN INTERACTS_WITH MAPK1 -JUN INTERACTS_WITH MAPK3 -JUN INTERACTS_WITH SMAD4 -JUN INTERACTS_WITH SP1 -JUN INTERACTS_WITH TGIF1 -JUP INTERACTS_WITH APC -JUP INTERACTS_WITH CTNNB1 -KAT2B INTERACTS_WITH AR -KAT2B INTERACTS_WITH NOTCH3 -KAT2B INTERACTS_WITH SMAD2 -KAT2B STATE_CHANGE AR -KCNQ1 INTERACTS_WITH TRAF6 -KHDRBS1 INTERACTS_WITH FYN -KHDRBS1 INTERACTS_WITH PLCG1 -KIT IN_SAME_COMPONENT CBL -KIT INTERACTS_WITH CBL -KIT INTERACTS_WITH CRK -KIT INTERACTS_WITH CRKL -KIT INTERACTS_WITH CSF2RB -KIT INTERACTS_WITH DOK1 -KIT INTERACTS_WITH EPOR -KIT INTERACTS_WITH FYN -KIT INTERACTS_WITH GRAP -Kit INTERACTS_WITH Grb10 -KIT INTERACTS_WITH GRB7 -KIT INTERACTS_WITH HCK -KIT INTERACTS_WITH INPP5D -KIT INTERACTS_WITH JAK2 -KIT INTERACTS_WITH KITLG -KIT INTERACTS_WITH LYN -KIT INTERACTS_WITH MATK -KIT INTERACTS_WITH PIK3CG -KIT INTERACTS_WITH PIK3R1 -KIT INTERACTS_WITH PLCE1 -KIT INTERACTS_WITH PLCG1 -Kit INTERACTS_WITH Ptpn6 -KIT INTERACTS_WITH PTPRU -KIT INTERACTS_WITH RASA1 -KIT INTERACTS_WITH SH3KBP1 -KIT INTERACTS_WITH SOCS1 -KIT INTERACTS_WITH SPRED1 -KIT INTERACTS_WITH SPRED2 -KIT INTERACTS_WITH SRC -Kit INTERACTS_WITH Stap1 -KIT INTERACTS_WITH STAT1 -KIT INTERACTS_WITH STAT5A -KIT INTERACTS_WITH STAT5B -KIT INTERACTS_WITH YES1 -KITLG INTERACTS_WITH KIT -KIT STATE_CHANGE KIT -KIT STATE_CHANGE SPRED1 -KIT STATE_CHANGE SPRED2 -KIT STATE_CHANGE STAT1 -KIT STATE_CHANGE STAT5A -KIT STATE_CHANGE STAT5B -Kit STATE_CHANGE Vav1 -KPNA2 INTERACTS_WITH NFKBIB -KPNA2 INTERACTS_WITH RELB -KPNA3 INTERACTS_WITH NFKB1 -KPNA6 INTERACTS_WITH RELB -KRAS INTERACTS_WITH SHOC2 -KRT17 INTERACTS_WITH EGFR -KRT18 INTERACTS_WITH EGFR -KRT7 INTERACTS_WITH EGFR -KRT8 INTERACTS_WITH EGFR -Lck IN_SAME_COMPONENT PIK3R2 -LEF1 IN_SAME_COMPONENT NLK -LEF1 INTERACTS_WITH CDX1 -LEF1 INTERACTS_WITH CTNNB1 -LEF1 INTERACTS_WITH NLK -LEF1 INTERACTS_WITH SMAD2 -LEF1 INTERACTS_WITH SMAD4 -Lef1 INTERACTS_WITH Sumo2 -LRP1 INTERACTS_WITH FZD1 -LRP5 INTERACTS_WITH DKK1 -LRP6 INTERACTS_WITH AXIN1 -LRP6 INTERACTS_WITH DKK1 -LRP6 INTERACTS_WITH FZD1 -LRP6 INTERACTS_WITH FZD5 -LRP6 INTERACTS_WITH WNT1 -LRPPRC INTERACTS_WITH NFKBIB -LYN IN_SAME_COMPONENT DOK1 -LYN INTERACTS_WITH DOK1 -LYN INTERACTS_WITH KIT -LYN STATE_CHANGE DOK1 -LYN STATE_CHANGE KIT -LYN STATE_CHANGE LYN -MAGEA1 INTERACTS_WITH SNW1 -MAGI3 IN_SAME_COMPONENT FZD4 -MAGI3 INTERACTS_WITH FZD4 -MAGI3 INTERACTS_WITH FZD7 -MAML1 INTERACTS_WITH EP300 -MAML1 INTERACTS_WITH NOTCH2 -MAML1 INTERACTS_WITH NOTCH4 -MAML3 INTERACTS_WITH NOTCH2 -MAML3 INTERACTS_WITH NOTCH4 -MAP2K1 INTERACTS_WITH EGFR -MAP2K1 INTERACTS_WITH MAPK14 -MAP2K1 INTERACTS_WITH MAPK3 -MAP2K1 INTERACTS_WITH PEBP1 -MAP2K1 INTERACTS_WITH RAF1 -MAP2K1 STATE_CHANGE MAP2K1 -MAP2K1 STATE_CHANGE MAPK1 -MAP2K1 STATE_CHANGE MAPK3 -MAP2K2 INTERACTS_WITH MAPK3 -MAP2K2 STATE_CHANGE MAP2K2 -MAP2K2 STATE_CHANGE MAPK3 -MAP2K6 INTERACTS_WITH SMAD7 -MAP2K6 STATE_CHANGE MAPK14 -MAP3K14 INTERACTS_WITH ALPL -MAP3K14 INTERACTS_WITH CDC37 -MAP3K14 INTERACTS_WITH CHUK -MAP3K14 INTERACTS_WITH EGFR -MAP3K14 INTERACTS_WITH FBL -MAP3K14 INTERACTS_WITH GRB14 -MAP3K14 INTERACTS_WITH GRB7 -MAP3K14 INTERACTS_WITH HSP90AA1 -MAP3K14 INTERACTS_WITH HSP90AB1 -MAP3K14 INTERACTS_WITH NFKB2 -MAP3K14 INTERACTS_WITH PEBP1 -MAP3K14 INTERACTS_WITH RIPK1 -MAP3K14 INTERACTS_WITH RPL4 -MAP3K14 INTERACTS_WITH RPL6 -MAP3K14 INTERACTS_WITH TRAF2 -MAP3K14 INTERACTS_WITH TRAF3 -MAP3K14 INTERACTS_WITH TRAF5 -MAP3K14 INTERACTS_WITH TRAF6 -MAP3K14 STATE_CHANGE CHUK -MAP3K14 STATE_CHANGE MAP3K14 -MAP3K2 STATE_CHANGE NFKBIA -MAP3K3 INTERACTS_WITH CDC37 -MAP3K3 INTERACTS_WITH GAB1 -MAP3K3 INTERACTS_WITH HSP90AA1 -MAP3K3 INTERACTS_WITH HSP90AB1 -MAP3K3 INTERACTS_WITH MARK2 -MAP3K3 INTERACTS_WITH PFDN2 -MAP3K3 INTERACTS_WITH YWHAB -MAP3K3 INTERACTS_WITH YWHAE -MAP3K3 INTERACTS_WITH YWHAG -MAP3K3 INTERACTS_WITH YWHAH -MAP3K3 INTERACTS_WITH YWHAQ -MAP3K3 INTERACTS_WITH YWHAZ -MAP3K3 STATE_CHANGE MAP3K3 -MAP3K3 STATE_CHANGE NFKBIA -MAP3K4 INTERACTS_WITH AXIN1 -MAP3K4 INTERACTS_WITH CDC42 -MAP3K4 INTERACTS_WITH RAC1 -MAP3K4 INTERACTS_WITH RUNX2 -MAP3K7 INTERACTS_WITH CAMK2B -MAP3K7 INTERACTS_WITH CAMK2D -MAP3K7 INTERACTS_WITH SMAD7 -MAP3K7 STATE_CHANGE HIPK2 -MAP3K7 STATE_CHANGE MAP3K7 -MAP3K7 STATE_CHANGE MAPK14 -MAP3K8 INTERACTS_WITH NFKB1 -MAP3K8 INTERACTS_WITH NFKB2 -MAP3K8 INTERACTS_WITH REL -MAP3K8 INTERACTS_WITH RELA -MAP3K8 INTERACTS_WITH TNIP2 -MAPK14 INTERACTS_WITH MAP2K1 -MAPK14 INTERACTS_WITH MAPK1 -MAPK14 INTERACTS_WITH MAPK3 -MAPK14 INTERACTS_WITH SMAD7 -MAPK14 STATE_CHANGE ATF2 -MAPK14 STATE_CHANGE MEF2C -MAPK1 INTERACTS_WITH CASP9 -MAPK1 INTERACTS_WITH CAV1 -MAPK1 INTERACTS_WITH EGFR -MAPK1 INTERACTS_WITH JUN -MAPK1 INTERACTS_WITH MAPK14 -MAPK1 INTERACTS_WITH PEBP1 -MAPK1 INTERACTS_WITH RPS6KA1 -MAPK1 INTERACTS_WITH TNIP1 -MAPK1 STATE_CHANGE CASP9 -MAPK1 STATE_CHANGE ELK1 -MAPK1 STATE_CHANGE JUND -MAPK1 STATE_CHANGE KLF11 -MAPK1 STATE_CHANGE SMAD2 -MAPK1 STATE_CHANGE TCF3 -MAPK1 STATE_CHANGE TGIF1 -MAPK3 INTERACTS_WITH CASP9 -MAPK3 INTERACTS_WITH CAV1 -MAPK3 INTERACTS_WITH ELK1 -MAPK3 INTERACTS_WITH JUN -MAPK3 INTERACTS_WITH MAP2K1 -MAPK3 INTERACTS_WITH MAP2K2 -MAPK3 INTERACTS_WITH MAPK14 -MAPK3 INTERACTS_WITH RPS6KA1 -MAPK3 STATE_CHANGE ELK1 -MAPK3 STATE_CHANGE JUND -MAPK3 STATE_CHANGE TCF3 -MAPK3 STATE_CHANGE TGIF1 -MAPK7 INTERACTS_WITH PTPRR -MAPK7 STATE_CHANGE GJA1 -MAPK7 STATE_CHANGE PTPRR -MAPK8 INTERACTS_WITH MAPK8IP1 -MAPK8 INTERACTS_WITH PAX2 -MAPK8IP1 INTERACTS_WITH MAPK8 -MAPK8IP1 INTERACTS_WITH PAX2 -MAPK8 STATE_CHANGE ELK1 -MAPK8 STATE_CHANGE JUN -MAPK8 STATE_CHANGE JUND -MAPK8 STATE_CHANGE PAX2 -MARK2 INTERACTS_WITH MAP3K3 -MATK INTERACTS_WITH KIT -MCC INTERACTS_WITH NFKBIB -MCM5 INTERACTS_WITH NFKBIA -MCM7 INTERACTS_WITH NFKBIA -MDM2 INTERACTS_WITH AR -MDM2 STATE_CHANGE AR -MET INTERACTS_WITH ITGB4 -MET STATE_CHANGE ITGB4 -MFNG STATE_CHANGE NOTCH2 -MMP7 STATE_CHANGE ITGB4 -MNAT1 INTERACTS_WITH AR -MSC INTERACTS_WITH ID2 -MST1R INTERACTS_WITH SFN -MST1R INTERACTS_WITH YWHAB -MST1R INTERACTS_WITH YWHAE -MST1R INTERACTS_WITH YWHAH -MST1R INTERACTS_WITH YWHAQ -MST1R INTERACTS_WITH YWHAZ -MTA2 INTERACTS_WITH APPL2 -MTIF2 INTERACTS_WITH NFKBIB -MTOR STATE_CHANGE EIF4EBP1 -MYC INTERACTS_WITH CEBPA -MYC INTERACTS_WITH CEBPB -MYC INTERACTS_WITH SMAD2 -MYOD1 INTERACTS_WITH ID4 -Myog INTERACTS_WITH Id3 -MYST2 INTERACTS_WITH AR -NCK1 INTERACTS_WITH CAV2 -NCK1 INTERACTS_WITH EGFR -NCK1 INTERACTS_WITH PKN2 -NCK1 INTERACTS_WITH SOS1 -NCK2 INTERACTS_WITH EGFR -NCK2 INTERACTS_WITH PKN2 -NCK2 INTERACTS_WITH SOS1 -NCOA1 INTERACTS_WITH AR -NCOA1 INTERACTS_WITH EP300 -NCOA2 INTERACTS_WITH AR -NCOA3 INTERACTS_WITH AR -NCOR1 INTERACTS_WITH RBPJ -NCOR2 INTERACTS_WITH AR -NCOR2 INTERACTS_WITH NFKBIA -NCOR2 INTERACTS_WITH RBPJ -NCOR2 INTERACTS_WITH RELA -NCOR2 INTERACTS_WITH SNW1 -NCSTN IN_SAME_COMPONENT APH1A -NCSTN IN_SAME_COMPONENT APH1B -NCSTN IN_SAME_COMPONENT PSEN1 -NCSTN IN_SAME_COMPONENT PSEN2 -NCSTN IN_SAME_COMPONENT PSENEN -NCSTN STATE_CHANGE APP -NCSTN STATE_CHANGE JAG2 -Ndufa13 INTERACTS_WITH Stat3 -NFKB1 IN_SAME_COMPONENT NFKBIA -NFKB1 IN_SAME_COMPONENT RELA -NFKB1 INTERACTS_WITH CFLAR -NFKB1 INTERACTS_WITH CHUK -NFKB1 INTERACTS_WITH FBXW11 -NFKB1 INTERACTS_WITH KPNA3 -NFKB1 INTERACTS_WITH MAP3K8 -NFKB1 INTERACTS_WITH NFKB2 -NFKB1 INTERACTS_WITH NFKBIA -NFKB1 INTERACTS_WITH NFKBIB -NFKB1 INTERACTS_WITH NFKBIE -NFKB1 INTERACTS_WITH NFKBIZ -NFKB1 INTERACTS_WITH REL -NFKB1 INTERACTS_WITH RELA -NFKB1 INTERACTS_WITH RELB -NFKB1 INTERACTS_WITH TNIP2 -NFKB1 INTERACTS_WITH UNC5CL -NFKB1 REACTS_WITH NFKB1 -NFKB1 REACTS_WITH NFKBIA -NFKB2 INTERACTS_WITH CHUK -NFKB2 INTERACTS_WITH DDX3X -NFKB2 INTERACTS_WITH GTF2I -NFKB2 INTERACTS_WITH MAP3K14 -NFKB2 INTERACTS_WITH MAP3K8 -NFKB2 INTERACTS_WITH NFKB1 -NFKB2 INTERACTS_WITH NFKBIA -NFKB2 INTERACTS_WITH NFKBIB -NFKB2 INTERACTS_WITH NFKBIE -NFKB2 INTERACTS_WITH REL -NFKB2 INTERACTS_WITH RELA -NFKB2 INTERACTS_WITH RELB -NFKB2 INTERACTS_WITH RPL6 -NFKB2 INTERACTS_WITH TNIP2 -NFKB2 INTERACTS_WITH USP2 -NFKBIA IN_SAME_COMPONENT NFKB1 -NFKBIA IN_SAME_COMPONENT RELA -NFKBIA INTERACTS_WITH CHUK -NFKBIA INTERACTS_WITH COMMD1 -NFKBIA INTERACTS_WITH CUL1 -NFKBIA INTERACTS_WITH FBXW11 -NFKBIA INTERACTS_WITH G3BP2 -NFKBIA INTERACTS_WITH HSPB1 -NFKBIA INTERACTS_WITH IKBKAP -NFKBIA INTERACTS_WITH MCM5 -NFKBIA INTERACTS_WITH MCM7 -NFKBIA INTERACTS_WITH NCOR2 -NFKBIA INTERACTS_WITH NFKB1 -NFKBIA INTERACTS_WITH NFKB2 -NFKBIA INTERACTS_WITH NFKBIB -NFKBIA INTERACTS_WITH NKIRAS1 -NFKBIA INTERACTS_WITH NKIRAS2 -NFKBIA INTERACTS_WITH REL -NFKBIA INTERACTS_WITH RELA -NFKBIA INTERACTS_WITH SKP1 -NFKBIA REACTS_WITH NFKB1 -NFKBIA REACTS_WITH NFKBIA -NFKBIA REACTS_WITH RELA -NFKBIB INTERACTS_WITH CD3EAP -NFKBIB INTERACTS_WITH CHUK -NFKBIB INTERACTS_WITH CUL1 -NFKBIB INTERACTS_WITH IQGAP2 -NFKBIB INTERACTS_WITH KPNA2 -NFKBIB INTERACTS_WITH LRPPRC -NFKBIB INTERACTS_WITH MCC -NFKBIB INTERACTS_WITH MTIF2 -NFKBIB INTERACTS_WITH NFKB1 -NFKBIB INTERACTS_WITH NFKB2 -NFKBIB INTERACTS_WITH NFKBIA -NFKBIB INTERACTS_WITH NKIRAS1 -NFKBIB INTERACTS_WITH NKIRAS2 -NFKBIB INTERACTS_WITH PDCD2 -NFKBIB INTERACTS_WITH POLR1A -NFKBIB INTERACTS_WITH POLR1B -NFKBIB INTERACTS_WITH POLR1D -NFKBIB INTERACTS_WITH POLR1E -NFKBIB INTERACTS_WITH POLR2H -NFKBIB INTERACTS_WITH RASAL2 -NFKBIB INTERACTS_WITH REL -NFKBIB INTERACTS_WITH RELA -NFKBIB INTERACTS_WITH SKP1 -NFKBIE INTERACTS_WITH CUL1 -NFKBIE INTERACTS_WITH NFKB1 -NFKBIE INTERACTS_WITH NFKB2 -NFKBIE INTERACTS_WITH PPP6C -NFKBIE INTERACTS_WITH REL -NFKBIE INTERACTS_WITH RELA -NFKBIE INTERACTS_WITH SKP1 -NFKBIZ INTERACTS_WITH NFKB1 -NFYA INTERACTS_WITH NFYB -NFYB INTERACTS_WITH NFYA -Nfyc INTERACTS_WITH Smad2 -NKIRAS1 INTERACTS_WITH NFKBIA -NKIRAS1 INTERACTS_WITH NFKBIB -NKIRAS2 INTERACTS_WITH NFKBIA -NKIRAS2 INTERACTS_WITH NFKBIB -NLK IN_SAME_COMPONENT LEF1 -NLK INTERACTS_WITH CTNNB1 -NLK INTERACTS_WITH HIPK2 -NLK INTERACTS_WITH LEF1 -NLK STATE_CHANGE LEF1 -NLK STATE_CHANGE NLK -NLRP4 INTERACTS_WITH CHUK -NOTCH2 IN_SAME_COMPONENT RBPJ -Notch2 INTERACTS_WITH Cntn1 -NOTCH2 INTERACTS_WITH GSK3B -NOTCH2 INTERACTS_WITH MAML1 -NOTCH2 INTERACTS_WITH MAML3 -Notch2 INTERACTS_WITH Rbpj -NOTCH3 INTERACTS_WITH DLL1 -NOTCH3 INTERACTS_WITH JAG2 -NOTCH3 INTERACTS_WITH KAT2B -Notch3 INTERACTS_WITH Rbpj -NOTCH3 INTERACTS_WITH SNW1 -NOTCH4 IN_SAME_COMPONENT RBPJ -NOTCH4 INTERACTS_WITH MAML1 -NOTCH4 INTERACTS_WITH MAML3 -NR0B2 INTERACTS_WITH AR -NR2C2 INTERACTS_WITH AR -NR2C2 INTERACTS_WITH CDC37 -NR2C2 INTERACTS_WITH FKBP5 -NR2C2 INTERACTS_WITH HSP90AA1 -NR2C2 INTERACTS_WITH HSP90AB1 -NR2C2 INTERACTS_WITH PEBP1 -NR2C2 INTERACTS_WITH TAB1 -NR2C2 INTERACTS_WITH TAB2 -NR2C2 INTERACTS_WITH TAB3 -NR2C2 INTERACTS_WITH TRAF2 -NR2C2 INTERACTS_WITH TRAF6 -NR5A1 INTERACTS_WITH AR -NR5A1 INTERACTS_WITH CTNNB1 -NRAS INTERACTS_WITH SHOC2 -NSD1 INTERACTS_WITH AR -NSMAF INTERACTS_WITH TNFRSF1A -NUP153 INTERACTS_WITH SMAD2 -NUP214 INTERACTS_WITH SMAD2 -NUP214 INTERACTS_WITH SMAD4 -PA2G4 INTERACTS_WITH AR -PAK1 INTERACTS_WITH RAC1 -PAK1 STATE_CHANGE MBP -PAK6 INTERACTS_WITH AR -PAK6 STATE_CHANGE AR -PAPOLA INTERACTS_WITH REL -PATZ1 INTERACTS_WITH AR -PATZ1 INTERACTS_WITH RNF4 -PAX2 INTERACTS_WITH MAPK8 -PAX2 INTERACTS_WITH MAPK8IP1 -PDCD2 INTERACTS_WITH NFKBIB -PEBP1 INTERACTS_WITH CHUK -PEBP1 INTERACTS_WITH MAP2K1 -PEBP1 INTERACTS_WITH MAP3K14 -PEBP1 INTERACTS_WITH MAPK1 -PEBP1 INTERACTS_WITH NR2C2 -PEBP1 INTERACTS_WITH RAF1 -PEG3 INTERACTS_WITH TRAF2 -PFDN2 INTERACTS_WITH MAP3K3 -PIAS1 INTERACTS_WITH AR -PIAS3 INTERACTS_WITH AR -PIAS3 INTERACTS_WITH STAT3 -PIAS4 INTERACTS_WITH AR -Pias4 STATE_CHANGE Lef1 -PIK3C2B INTERACTS_WITH EGFR -PIK3CA IN_SAME_COMPONENT PIK3CB -PIK3CA IN_SAME_COMPONENT PIK3CG -PIK3CA IN_SAME_COMPONENT PIK3R2 -PIK3CA IN_SAME_COMPONENT PIK3R3 -PIK3CA INTERACTS_WITH GAB1 -PIK3CA INTERACTS_WITH ITGB4 -PIK3CB IN_SAME_COMPONENT PIK3CA -PIK3CB IN_SAME_COMPONENT PIK3CG -PIK3CB IN_SAME_COMPONENT PIK3R2 -PIK3CB IN_SAME_COMPONENT PIK3R3 -PIK3CB INTERACTS_WITH GAB1 -PIK3CB INTERACTS_WITH ITGB4 -PIK3CG IN_SAME_COMPONENT PIK3CA -PIK3CG IN_SAME_COMPONENT PIK3CB -PIK3CG IN_SAME_COMPONENT PIK3R2 -PIK3CG IN_SAME_COMPONENT PIK3R3 -PIK3CG INTERACTS_WITH GAB1 -PIK3CG INTERACTS_WITH ITGB4 -PIK3CG INTERACTS_WITH KIT -PIK3R1 IN_SAME_COMPONENT PIK3R2 -PIK3R1 INTERACTS_WITH CBL -PIK3R1 INTERACTS_WITH CRK -PIK3R1 INTERACTS_WITH CRKL -PIK3R1 INTERACTS_WITH DOK1 -PIK3R1 INTERACTS_WITH KIT -PIK3R2 IN_SAME_COMPONENT Lck -PIK3R2 IN_SAME_COMPONENT PIK3CA -PIK3R2 IN_SAME_COMPONENT PIK3CB -PIK3R2 IN_SAME_COMPONENT PIK3CG -PIK3R2 IN_SAME_COMPONENT PIK3R1 -PIK3R2 IN_SAME_COMPONENT PIK3R3 -PIK3R2 INTERACTS_WITH CBL -PIK3R2 INTERACTS_WITH CRKL -PIK3R2 INTERACTS_WITH DOK1 -PIK3R2 INTERACTS_WITH GAB1 -PIK3R2 INTERACTS_WITH ITGB4 -PIK3R2 INTERACTS_WITH TGFBR2 -PIK3R3 IN_SAME_COMPONENT PIK3CA -PIK3R3 IN_SAME_COMPONENT PIK3CB -PIK3R3 IN_SAME_COMPONENT PIK3CG -PIK3R3 IN_SAME_COMPONENT PIK3R2 -PIK3R3 INTERACTS_WITH GAB1 -PIK3R3 INTERACTS_WITH ITGB4 -PIN1 INTERACTS_WITH CTNNB1 -PITPNA INTERACTS_WITH EGFR -PKN1 INTERACTS_WITH TRAF2 -PKN2 INTERACTS_WITH NCK1 -PKN2 INTERACTS_WITH NCK2 -PLCE1 INTERACTS_WITH KIT -PLCG1 INTERACTS_WITH DOK1 -PLCG1 INTERACTS_WITH KHDRBS1 -PLCG1 INTERACTS_WITH KIT -PLD2 INTERACTS_WITH PRKCA -PLEC INTERACTS_WITH COL17A1 -PLEC INTERACTS_WITH EGFR -PLEC INTERACTS_WITH ITGB4 -PLSCR1 INTERACTS_WITH EGFR -PNRC1 INTERACTS_WITH AR -POLR1A INTERACTS_WITH NFKBIB -POLR1B INTERACTS_WITH NFKBIB -POLR1D INTERACTS_WITH NFKBIB -POLR1E INTERACTS_WITH NFKBIB -POLR2H INTERACTS_WITH NFKBIB -POU2F2 INTERACTS_WITH AR -PPP1R13L INTERACTS_WITH RELA -PPP2CA INTERACTS_WITH AXIN1 -PPP2CA INTERACTS_WITH CTNNB1 -PPP2CA INTERACTS_WITH DVL3 -PPP2CA STATE_CHANGE APC -PPP2CA STATE_CHANGE AXIN1 -PPP2CA STATE_CHANGE RELA -PPP2R5B INTERACTS_WITH AXIN1 -PPP6C INTERACTS_WITH NFKBIE -PRKACA STATE_CHANGE RELA -PRKAR1A INTERACTS_WITH EGFR -PRKAR1B INTERACTS_WITH SMAD4 -PRKAR2A INTERACTS_WITH SMAD4 -PRKCA INTERACTS_WITH DVL2 -PRKCA INTERACTS_WITH EGFR -PRKCA INTERACTS_WITH PLD2 -PRKCA STATE_CHANGE DVL2 -PRKCA STATE_CHANGE ITGB4 -PRKCA STATE_CHANGE KIT -PRKCB INTERACTS_WITH DVL2 -PRKCB STATE_CHANGE DAB2 -PRKCB STATE_CHANGE DVL2 -PRKCB STATE_CHANGE KIT -PRKCD STATE_CHANGE DAB2 -PRKCD STATE_CHANGE ITGA6 -PRKCD STATE_CHANGE ITGB4 -PRKCG INTERACTS_WITH DVL2 -PRKCG STATE_CHANGE DAB2 -PRKCG STATE_CHANGE DVL2 -PRKCZ STATE_CHANGE RELA -PRKD1 STATE_CHANGE EGFR -PRMT1 INTERACTS_WITH AR -PRPF6 INTERACTS_WITH AR -PSEN1 IN_SAME_COMPONENT APH1A -PSEN1 IN_SAME_COMPONENT APH1B -PSEN1 IN_SAME_COMPONENT NCSTN -PSEN1 IN_SAME_COMPONENT PSEN2 -PSEN1 IN_SAME_COMPONENT PSENEN -PSEN1 INTERACTS_WITH PSENEN -PSEN1 STATE_CHANGE APP -PSEN1 STATE_CHANGE JAG2 -PSEN2 IN_SAME_COMPONENT APH1A -PSEN2 IN_SAME_COMPONENT APH1B -PSEN2 IN_SAME_COMPONENT NCSTN -PSEN2 IN_SAME_COMPONENT PSEN1 -PSEN2 IN_SAME_COMPONENT PSENEN -PSEN2 STATE_CHANGE APP -PSEN2 STATE_CHANGE JAG2 -PSENEN IN_SAME_COMPONENT APH1A -PSENEN IN_SAME_COMPONENT APH1B -PSENEN IN_SAME_COMPONENT NCSTN -PSENEN IN_SAME_COMPONENT PSEN1 -PSENEN IN_SAME_COMPONENT PSEN2 -PSENEN INTERACTS_WITH PSEN1 -PSENEN STATE_CHANGE APP -PSENEN STATE_CHANGE JAG2 -PSMB5 INTERACTS_WITH TRAF6 -PSMC1 INTERACTS_WITH TRAF6 -PSMC2 INTERACTS_WITH TRAF6 -PSMC3 INTERACTS_WITH TRAF6 -PSMC3IP INTERACTS_WITH AR -PSMD12 INTERACTS_WITH TRAF6 -PSMD13 INTERACTS_WITH TRAF6 -PSMD1 INTERACTS_WITH TRAF6 -PSMD3 INTERACTS_WITH TRAF6 -PSMD6 INTERACTS_WITH TRAF6 -PSMD7 INTERACTS_WITH TRAF6 -PTCH1 INTERACTS_WITH CCNB1 -PTCH1 INTERACTS_WITH CDK1 -PTCH1 INTERACTS_WITH DHH -PTCH1 INTERACTS_WITH IHH -PTCH1 INTERACTS_WITH SMO -PTCH2 INTERACTS_WITH DHH -PTCH2 INTERACTS_WITH IHH -PTCH2 INTERACTS_WITH SMO -PTEN INTERACTS_WITH AR -PTK2B INTERACTS_WITH STAT3 -PTK2 INTERACTS_WITH ITGB4 -Ptk2 INTERACTS_WITH Tnfrsf1a -PTK6 INTERACTS_WITH EGFR -PTPN11 INTERACTS_WITH CHUK -PTPN11 INTERACTS_WITH EGFR -PTPN11 INTERACTS_WITH GAB1 -PTPN11 STATE_CHANGE EGFR -PTPN11 STATE_CHANGE PXN -PTPN12 INTERACTS_WITH JAK2 -PTPN6 INTERACTS_WITH CTNND1 -PTPN6 INTERACTS_WITH EGFR -Ptpn6 INTERACTS_WITH Kit -PTPN6 STATE_CHANGE CTNND1 -PTPN6 STATE_CHANGE PTPN6 -PTPRR INTERACTS_WITH MAPK7 -PTPRR STATE_CHANGE MAPK7 -PTPRU INTERACTS_WITH KIT -RAB5A INTERACTS_WITH APPL2 -RAC1 INTERACTS_WITH MAP3K4 -RAC1 INTERACTS_WITH PAK1 -RAC1 INTERACTS_WITH RUNX2 -RAC1 INTERACTS_WITH STAT3 -RAC3 INTERACTS_WITH AR -RAF1 INTERACTS_WITH AKT1 -RAF1 INTERACTS_WITH HRAS -RAF1 INTERACTS_WITH MAP2K1 -RAF1 INTERACTS_WITH PEBP1 -RAF1 INTERACTS_WITH SHOC2 -RALB INTERACTS_WITH RALBP1 -RALBP1 INTERACTS_WITH RALB -RANBP9 INTERACTS_WITH AR -RAN INTERACTS_WITH AR -RASA1 INTERACTS_WITH CAV2 -RASA1 INTERACTS_WITH DOK1 -RASA1 INTERACTS_WITH EGFR -RASA1 INTERACTS_WITH HTT -RASA1 INTERACTS_WITH KIT -RASA1 INTERACTS_WITH SOCS3 -RASAL2 INTERACTS_WITH NFKBIB -RB1 INTERACTS_WITH AR -RB1 INTERACTS_WITH E2F4 -RB1 INTERACTS_WITH ID2 -RBBP7 INTERACTS_WITH APPL2 -RBL1 IN_SAME_COMPONENT E2F4 -RBL1 IN_SAME_COMPONENT TFDP1 -RBL1 INTERACTS_WITH CCNE1 -RBL1 INTERACTS_WITH CDK2 -RBL1 INTERACTS_WITH E2F4 -RBL1 INTERACTS_WITH SMAD4 -RBL1 INTERACTS_WITH TFDP1 -RBL1 REACTS_WITH E2F4 -RBL1 REACTS_WITH RBL1 -RBL2 IN_SAME_COMPONENT E2F4 -RBL2 INTERACTS_WITH E2F4 -Rbl2 INTERACTS_WITH Hdac1 -RBL2 INTERACTS_WITH TFDP1 -RBL2 REACTS_WITH E2F4 -RBL2 REACTS_WITH RBL2 -RBPJ IN_SAME_COMPONENT NOTCH2 -RBPJ IN_SAME_COMPONENT NOTCH4 -RBPJ INTERACTS_WITH CIR1 -RBPJ INTERACTS_WITH NCOR1 -RBPJ INTERACTS_WITH NCOR2 -Rbpj INTERACTS_WITH Notch2 -Rbpj INTERACTS_WITH Notch3 -RBPJ INTERACTS_WITH SNW1 -RBPJ INTERACTS_WITH SPEN -RBX1 IN_SAME_COMPONENT CUL1 -RBX1 IN_SAME_COMPONENT SKP1 -RBX1 IN_SAME_COMPONENT SKP2 -RBX1 STATE_CHANGE TCF3 -RCHY1 INTERACTS_WITH AR -RCHY1 STATE_CHANGE AR -RELA IN_SAME_COMPONENT NFKB1 -RELA IN_SAME_COMPONENT NFKBIA -RELA INTERACTS_WITH ACTL6A -RELA INTERACTS_WITH AR -RELA INTERACTS_WITH COMMD1 -RELA INTERACTS_WITH CREBBP -RELA INTERACTS_WITH FAF1 -RELA INTERACTS_WITH G3BP2 -RELA INTERACTS_WITH HDAC2 -RELA INTERACTS_WITH IQGAP2 -RELA INTERACTS_WITH MAP3K8 -RELA INTERACTS_WITH NCOR2 -RELA INTERACTS_WITH NFKB1 -RELA INTERACTS_WITH NFKB2 -RELA INTERACTS_WITH NFKBIA -RELA INTERACTS_WITH NFKBIB -RELA INTERACTS_WITH NFKBIE -RELA INTERACTS_WITH PPP1R13L -RELA INTERACTS_WITH REL -RELA INTERACTS_WITH RELB -RELA INTERACTS_WITH RNF25 -RELA INTERACTS_WITH TNIP2 -RELA INTERACTS_WITH TRIB3 -RELA INTERACTS_WITH UNC5CL -RELA REACTS_WITH NFKBIA -RELA REACTS_WITH RELA -RELB INTERACTS_WITH BCL7A -RELB INTERACTS_WITH DPF2 -RELB INTERACTS_WITH HDAC6 -RELB INTERACTS_WITH KPNA2 -RELB INTERACTS_WITH KPNA6 -RELB INTERACTS_WITH NFKB1 -RELB INTERACTS_WITH NFKB2 -RELB INTERACTS_WITH RELA -RELB INTERACTS_WITH SMARCB1 -RELB INTERACTS_WITH SMARCC1 -RELB INTERACTS_WITH SMARCE1 -RELB INTERACTS_WITH USP11 -REL INTERACTS_WITH MAP3K8 -REL INTERACTS_WITH NFKB1 -REL INTERACTS_WITH NFKB2 -REL INTERACTS_WITH NFKBIA -REL INTERACTS_WITH NFKBIB -REL INTERACTS_WITH NFKBIE -REL INTERACTS_WITH PAPOLA -REL INTERACTS_WITH RELA -REL INTERACTS_WITH TNIP2 -RGS16 INTERACTS_WITH EGFR -RHOA INTERACTS_WITH DAAM1 -RIPK1 IN_SAME_COMPONENT BIRC2 -RIPK1 IN_SAME_COMPONENT CASP10 -RIPK1 IN_SAME_COMPONENT FADD -RIPK1 IN_SAME_COMPONENT TRADD -RIPK1 IN_SAME_COMPONENT TRAF2 -RIPK1 INTERACTS_WITH CASP8 -RIPK1 INTERACTS_WITH CRADD -RIPK1 INTERACTS_WITH EGFR -RIPK1 INTERACTS_WITH HSP90AA1 -RIPK1 INTERACTS_WITH MAP3K14 -RIPK1 INTERACTS_WITH RIPK3 -RIPK1 INTERACTS_WITH TNFRSF1A -RIPK1 INTERACTS_WITH ZFAND5 -RIPK1 STATE_CHANGE RIPK1 -RIPK3 INTERACTS_WITH RIPK1 -RIPK3 INTERACTS_WITH TRAF2 -RIPK3 STATE_CHANGE RIPK1 -RNF14 INTERACTS_WITH AR -RNF25 INTERACTS_WITH RELA -RNF4 IN_SAME_COMPONENT AR -RNF4 INTERACTS_WITH AR -RNF4 INTERACTS_WITH PATZ1 -ROCK1 INTERACTS_WITH CDC25A -RPL4 INTERACTS_WITH MAP3K14 -RPL6 INTERACTS_WITH MAP3K14 -RPL6 INTERACTS_WITH NFKB2 -RPS6KA1 INTERACTS_WITH MAPK1 -RPS6KA1 INTERACTS_WITH MAPK3 -RPS6KA3 STATE_CHANGE HIST3H3 -RPS6KB2 INTERACTS_WITH TRAF4 -RPSA INTERACTS_WITH ITGA6 -RUNX2 INTERACTS_WITH AR -RUNX2 INTERACTS_WITH AXIN1 -RUNX2 INTERACTS_WITH DVL2 -RUNX2 INTERACTS_WITH MAP3K4 -RUNX2 INTERACTS_WITH RAC1 -RUNX2 INTERACTS_WITH SMAD2 -RUVBL1 INTERACTS_WITH CTNNB1 -RUVBL1 INTERACTS_WITH TBP -SALL1 INTERACTS_WITH CTNNB1 -SAP30 INTERACTS_WITH CIR1 -SDC2 INTERACTS_WITH TGFB1 -SDC2 INTERACTS_WITH TGFBR3 -SFN INTERACTS_WITH MST1R -SFRP1 INTERACTS_WITH WNT1 -SFRP1 INTERACTS_WITH WNT4 -SH3BGRL INTERACTS_WITH EGFR -SH3GL3 INTERACTS_WITH DNM1 -SH3GL3 INTERACTS_WITH WASL -SH3KBP1 INTERACTS_WITH ASAP1 -SH3KBP1 INTERACTS_WITH CBL -SH3KBP1 INTERACTS_WITH KIT -SHC1 INTERACTS_WITH CBL -SHC1 INTERACTS_WITH DOK1 -SHC1 INTERACTS_WITH ITGB4 -SHC1 INTERACTS_WITH SOS1 -SHOC2 INTERACTS_WITH HRAS -SHOC2 INTERACTS_WITH KRAS -SHOC2 INTERACTS_WITH NRAS -SHOC2 INTERACTS_WITH RAF1 -SIN3A INTERACTS_WITH TGIF1 -SKI INTERACTS_WITH SMAD2 -SKI INTERACTS_WITH SMAD4 -SKIL INTERACTS_WITH CDC16 -SKIL INTERACTS_WITH CDC27 -SKIL INTERACTS_WITH FZR1 -SKIL INTERACTS_WITH SMAD2 -SKIL INTERACTS_WITH SMAD4 -SKP1 IN_SAME_COMPONENT CUL1 -SKP1 IN_SAME_COMPONENT FBXW11 -SKP1 IN_SAME_COMPONENT RBX1 -SKP1 IN_SAME_COMPONENT SKP2 -SKP1 INTERACTS_WITH CTNNB1 -SKP1 INTERACTS_WITH CUL1 -SKP1 INTERACTS_WITH FBXW7 -SKP1 INTERACTS_WITH NFKBIA -SKP1 INTERACTS_WITH NFKBIB -SKP1 INTERACTS_WITH NFKBIE -SKP1 STATE_CHANGE CTNNB1 -SKP1 STATE_CHANGE TCF3 -SKP2 IN_SAME_COMPONENT CUL1 -SKP2 IN_SAME_COMPONENT RBX1 -SKP2 IN_SAME_COMPONENT SKP1 -SKP2 INTERACTS_WITH TCF3 -SKP2 STATE_CHANGE TCF3 -SMAD2 IN_SAME_COMPONENT SMAD4 -SMAD2 INTERACTS_WITH CDC16 -SMAD2 INTERACTS_WITH CDC27 -SMAD2 INTERACTS_WITH CTNNB1 -SMAD2 INTERACTS_WITH DAB2 -Smad2 INTERACTS_WITH Dvl1 -SMAD2 INTERACTS_WITH EID2 -SMAD2 INTERACTS_WITH EP300 -SMAD2 INTERACTS_WITH ESR1 -SMAD2 INTERACTS_WITH FOXH1 -SMAD2 INTERACTS_WITH FOXO3 -SMAD2 INTERACTS_WITH HDAC1 -Smad2 INTERACTS_WITH Hgs -SMAD2 INTERACTS_WITH KAT2B -SMAD2 INTERACTS_WITH LEF1 -SMAD2 INTERACTS_WITH MYC -Smad2 INTERACTS_WITH Nfyc -SMAD2 INTERACTS_WITH NUP153 -SMAD2 INTERACTS_WITH NUP214 -SMAD2 INTERACTS_WITH RUNX2 -SMAD2 INTERACTS_WITH SKI -SMAD2 INTERACTS_WITH SKIL -SMAD2 INTERACTS_WITH SMAD4 -SMAD2 INTERACTS_WITH SNIP1 -SMAD2 INTERACTS_WITH SNW1 -SMAD2 INTERACTS_WITH SP1 -SMAD2 INTERACTS_WITH STAMBPL1 -SMAD2 INTERACTS_WITH STRAP -SMAD2 INTERACTS_WITH TGIF1 -SMAD2 INTERACTS_WITH TP53 -SMAD2 INTERACTS_WITH TP73 -SMAD2 INTERACTS_WITH ZEB1 -SMAD2 INTERACTS_WITH ZFYVE9 -SMAD2 REACTS_WITH SMAD2 -SMAD2 REACTS_WITH SMAD4 -SMAD4 IN_SAME_COMPONENT SMAD2 -SMAD4 INTERACTS_WITH AR -SMAD4 INTERACTS_WITH ATF2 -SMAD4 INTERACTS_WITH BTRC -SMAD4 INTERACTS_WITH CITED1 -SMAD4 INTERACTS_WITH COPS5 -SMAD4 INTERACTS_WITH CTCF -SMAD4 INTERACTS_WITH CTNNB1 -SMAD4 INTERACTS_WITH E2F4 -SMAD4 INTERACTS_WITH EID2 -SMAD4 INTERACTS_WITH EP300 -SMAD4 INTERACTS_WITH ESR1 -SMAD4 INTERACTS_WITH FOS -SMAD4 INTERACTS_WITH FOXO1 -SMAD4 INTERACTS_WITH FOXO3 -SMAD4 INTERACTS_WITH FOXO4 -SMAD4 INTERACTS_WITH HOXA9 -SMAD4 INTERACTS_WITH JUN -SMAD4 INTERACTS_WITH JUNB -SMAD4 INTERACTS_WITH JUND -SMAD4 INTERACTS_WITH LEF1 -SMAD4 INTERACTS_WITH NUP214 -SMAD4 INTERACTS_WITH PRKAR1B -SMAD4 INTERACTS_WITH PRKAR2A -SMAD4 INTERACTS_WITH RBL1 -SMAD4 INTERACTS_WITH SKI -SMAD4 INTERACTS_WITH SKIL -SMAD4 INTERACTS_WITH SMAD2 -SMAD4 INTERACTS_WITH SNIP1 -SMAD4 INTERACTS_WITH SP1 -SMAD4 INTERACTS_WITH Stk11 -SMAD4 INTERACTS_WITH STK11IP -SMAD4 INTERACTS_WITH TFDP1 -SMAD4 INTERACTS_WITH TGFBRAP1 -SMAD4 REACTS_WITH SMAD2 -SMAD4 REACTS_WITH SMAD4 -SMAD6 INTERACTS_WITH STRAP -SMAD7 IN_SAME_COMPONENT SMURF1 -SMAD7 IN_SAME_COMPONENT SMURF2 -SMAD7 INTERACTS_WITH EP300 -SMAD7 INTERACTS_WITH MAP2K6 -SMAD7 INTERACTS_WITH MAP3K7 -SMAD7 INTERACTS_WITH MAPK14 -SMAD7 INTERACTS_WITH SMURF1 -SMAD7 INTERACTS_WITH SMURF2 -SMAD7 INTERACTS_WITH STAMBPL1 -SMAD7 INTERACTS_WITH STRAP -SMAD7 INTERACTS_WITH TGFBR2 -SMAD7 REACTS_WITH SMAD7 -SMAD7 REACTS_WITH SMURF1 -SMAD7 REACTS_WITH SMURF2 -SMARCB1 INTERACTS_WITH RELB -SMARCC1 INTERACTS_WITH RELB -SMARCE1 INTERACTS_WITH RELB -SMO INTERACTS_WITH PTCH1 -SMO INTERACTS_WITH PTCH2 -SMURF1 IN_SAME_COMPONENT SMAD7 -SMURF1 INTERACTS_WITH SMAD7 -SMURF1 INTERACTS_WITH TGFBR2 -SMURF1 INTERACTS_WITH XPO1 -SMURF1 REACTS_WITH SMAD7 -SMURF1 REACTS_WITH SMURF1 -SMURF1 STATE_CHANGE SMAD7 -SMURF2 IN_SAME_COMPONENT SMAD7 -SMURF2 INTERACTS_WITH SMAD7 -SMURF2 REACTS_WITH SMAD7 -SMURF2 REACTS_WITH SMURF2 -SNIP1 INTERACTS_WITH CREBBP -SNIP1 INTERACTS_WITH EP300 -SNIP1 INTERACTS_WITH SMAD2 -SNIP1 INTERACTS_WITH SMAD4 -SNW1 INTERACTS_WITH MAGEA1 -SNW1 INTERACTS_WITH NCOR2 -SNW1 INTERACTS_WITH NOTCH3 -SNW1 INTERACTS_WITH RBPJ -SNW1 INTERACTS_WITH SMAD2 -SOCS1 INTERACTS_WITH EGFR -SOCS1 INTERACTS_WITH KIT -SOCS1 INTERACTS_WITH VAV2 -SOCS3 INTERACTS_WITH EGFR -SOCS3 INTERACTS_WITH RASA1 -SOS1 INTERACTS_WITH ABI1 -SOS1 INTERACTS_WITH CRK -SOS1 INTERACTS_WITH EGFR -SOS1 INTERACTS_WITH NCK1 -SOS1 INTERACTS_WITH NCK2 -SOS1 INTERACTS_WITH SHC1 -SOX1 INTERACTS_WITH CTNNB1 -SP1 INTERACTS_WITH AR -SP1 INTERACTS_WITH ETS1 -SP1 INTERACTS_WITH JUN -SP1 INTERACTS_WITH SMAD2 -SP1 INTERACTS_WITH SMAD4 -SPDEF INTERACTS_WITH AR -SPEN INTERACTS_WITH RBPJ -SPRED1 INTERACTS_WITH KIT -SPRED2 INTERACTS_WITH KIT -SPRY2 INTERACTS_WITH CBLC -SRC INTERACTS_WITH DOK1 -SRC INTERACTS_WITH KIT -SRC STATE_CHANGE CHUK -SRC STATE_CHANGE KIT -SRC STATE_CHANGE NFKBIA -SRC STATE_CHANGE PTK2 -SRY INTERACTS_WITH AR -STAMBPL1 INTERACTS_WITH SMAD2 -STAMBPL1 INTERACTS_WITH SMAD7 -Stap1 INTERACTS_WITH Kit -STAT1 INTERACTS_WITH EGFR -STAT1 INTERACTS_WITH FADD -STAT1 INTERACTS_WITH JAK1 -STAT1 INTERACTS_WITH JAK2 -STAT1 INTERACTS_WITH KIT -STAT1 INTERACTS_WITH STAT3 -STAT1 INTERACTS_WITH STAT5A -STAT1 INTERACTS_WITH STAT5B -STAT1 INTERACTS_WITH TNFRSF1A -STAT1 INTERACTS_WITH TNFRSF1B -STAT1 INTERACTS_WITH TRADD -STAT3 INTERACTS_WITH AR -STAT3 INTERACTS_WITH JAK1 -STAT3 INTERACTS_WITH JAK2 -Stat3 INTERACTS_WITH Ndufa13 -STAT3 INTERACTS_WITH PIAS3 -STAT3 INTERACTS_WITH PTK2B -STAT3 INTERACTS_WITH RAC1 -STAT3 INTERACTS_WITH STAT1 -STAT3 INTERACTS_WITH STAT5B -STAT5A INTERACTS_WITH EGFR -STAT5A INTERACTS_WITH KIT -STAT5A INTERACTS_WITH STAT1 -STAT5A INTERACTS_WITH STAT5B -STAT5B INTERACTS_WITH EGFR -STAT5B INTERACTS_WITH KIT -STAT5B INTERACTS_WITH STAT1 -STAT5B INTERACTS_WITH STAT3 -STAT5B INTERACTS_WITH STAT5A -Stk11 IN_SAME_COMPONENT STK11IP -Stk11 INTERACTS_WITH SMAD4 -STK11IP IN_SAME_COMPONENT Stk11 -STK11IP INTERACTS_WITH SMAD4 -STK36 INTERACTS_WITH GLI1 -STK36 INTERACTS_WITH GLI3 -STK36 INTERACTS_WITH SUFU -STRAP INTERACTS_WITH SMAD2 -STRAP INTERACTS_WITH SMAD6 -STRAP INTERACTS_WITH SMAD7 -STRAP INTERACTS_WITH TGFBR2 -STUB1 INTERACTS_WITH AR -SUFU INTERACTS_WITH GLI1 -SUFU INTERACTS_WITH GLI3 -SUFU INTERACTS_WITH STK36 -Sumo2 INTERACTS_WITH Lef1 -SVIL INTERACTS_WITH AR -TAB1 INTERACTS_WITH NR2C2 -TAB1 INTERACTS_WITH TAB2 -TAB1 INTERACTS_WITH TRAF2 -TAB2 INTERACTS_WITH NR2C2 -TAB2 INTERACTS_WITH TAB1 -TAB2 INTERACTS_WITH TAB3 -TAB2 INTERACTS_WITH TRAF2 -TAB2 INTERACTS_WITH TRAF6 -TAB3 IN_SAME_COMPONENT TRAF2 -TAB3 IN_SAME_COMPONENT TRAF6 -TAB3 INTERACTS_WITH NR2C2 -TAB3 INTERACTS_WITH TAB2 -TAB3 INTERACTS_WITH TRAF2 -TAB3 INTERACTS_WITH TRAF6 -TANK INTERACTS_WITH TBK1 -TANK INTERACTS_WITH TRAF2 -TANK INTERACTS_WITH TRAF3 -TBK1 INTERACTS_WITH AZI2 -TBK1 INTERACTS_WITH CDC37 -TBK1 INTERACTS_WITH HSP90AA1 -TBK1 INTERACTS_WITH HSP90AB1 -TBK1 INTERACTS_WITH TANK -TBK1 INTERACTS_WITH TRAF2 -TBK1 STATE_CHANGE AZI2 -TBK1 STATE_CHANGE NFKBIA -TBK1 STATE_CHANGE RELA -TBK1 STATE_CHANGE TBK1 -TBP INTERACTS_WITH RUVBL1 -Tcf12 INTERACTS_WITH Id3 -TCF3 INTERACTS_WITH SKP2 -TFAP2A INTERACTS_WITH APC -TFAP2A INTERACTS_WITH CTNNB1 -TFDP1 IN_SAME_COMPONENT E2F4 -TFDP1 IN_SAME_COMPONENT RBL1 -TFDP1 INTERACTS_WITH E2F4 -TFDP1 INTERACTS_WITH RBL1 -TFDP1 INTERACTS_WITH RBL2 -TFDP1 INTERACTS_WITH SMAD4 -TFDP2 IN_SAME_COMPONENT E2F4 -TFDP2 INTERACTS_WITH E2F4 -TFDP2 REACTS_WITH E2F4 -TFDP2 REACTS_WITH TFDP2 -TGFB1I1 INTERACTS_WITH AR -TGFB1 IN_SAME_COMPONENT Tgfbr3 -TGFB1 INTERACTS_WITH SDC2 -TGFB1 INTERACTS_WITH TGFBR2 -TGFB3 INTERACTS_WITH TGFBR2 -TGFB3 INTERACTS_WITH TGFBR3 -TGFBR2 INTERACTS_WITH CCNB2 -TGFBR2 INTERACTS_WITH CDK1 -TGFBR2 INTERACTS_WITH CTNNB1 -TGFBR2 INTERACTS_WITH DAB2 -TGFBR2 INTERACTS_WITH DAXX -TGFBR2 INTERACTS_WITH EIF3I -TGFBR2 INTERACTS_WITH ENG -TGFBR2 INTERACTS_WITH PIK3R2 -TGFBR2 INTERACTS_WITH SMAD7 -TGFBR2 INTERACTS_WITH SMURF1 -TGFBR2 INTERACTS_WITH STRAP -TGFBR2 INTERACTS_WITH TGFB1 -TGFBR2 INTERACTS_WITH TGFB3 -TGFBR2 INTERACTS_WITH Tgfbr3 -TGFBR2 INTERACTS_WITH TGFBR3 -TGFBR2 INTERACTS_WITH TGFBRAP1 -TGFBR2 INTERACTS_WITH ZFYVE9 -TGFBR2 STATE_CHANGE CDK1 -TGFBR2 STATE_CHANGE EIF3I -TGFBR2 STATE_CHANGE ENG -TGFBR2 STATE_CHANGE TGFBR2 -TGFBR2 STATE_CHANGE TGFBR3 -Tgfbr3 IN_SAME_COMPONENT TGFB1 -TGFBR3 INTERACTS_WITH ARRB2 -TGFBR3 INTERACTS_WITH SDC2 -TGFBR3 INTERACTS_WITH TGFB3 -Tgfbr3 INTERACTS_WITH TGFBR2 -TGFBR3 INTERACTS_WITH TGFBR2 -TGFBRAP1 INTERACTS_WITH SMAD4 -TGFBRAP1 INTERACTS_WITH TGFBR2 -TGIF1 INTERACTS_WITH AR -TGIF1 INTERACTS_WITH HDAC1 -TGIF1 INTERACTS_WITH JUN -TGIF1 INTERACTS_WITH SIN3A -TGIF1 INTERACTS_WITH SMAD2 -TIFA INTERACTS_WITH TRAF2 -TMF1 INTERACTS_WITH AR -TNFAIP3 INTERACTS_WITH TRAF2 -TNFAIP3 INTERACTS_WITH ZFAND5 -TNFAIP3 STATE_CHANGE RIPK1 -TNF INTERACTS_WITH TNFRSF1A -TNF INTERACTS_WITH TNFRSF1B -TNFRSF11A INTERACTS_WITH TRAF2 -TNFRSF1A INTERACTS_WITH BAG4 -TNFRSF1A INTERACTS_WITH BIRC2 -TNFRSF1A INTERACTS_WITH DAP -TNFRSF1A INTERACTS_WITH FANCD2 -TNFRSF1A INTERACTS_WITH NSMAF -Tnfrsf1a INTERACTS_WITH Ptk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angl2 INTERACTS_WITH Dvl1 -VAV1 INTERACTS_WITH EGFR -VAV2 INTERACTS_WITH SOCS1 -VIM INTERACTS_WITH ITGB4 -WASL INTERACTS_WITH SH3GL3 -WNT1 INTERACTS_WITH FZD1 -WNT1 INTERACTS_WITH LRP6 -WNT1 INTERACTS_WITH SFRP1 -WNT2 INTERACTS_WITH FZD1 -WNT3A INTERACTS_WITH FZD1 -WNT3 INTERACTS_WITH FZD1 -Wnt4 INTERACTS_WITH Fzd6 -WNT4 INTERACTS_WITH SFRP1 -WNT7A INTERACTS_WITH FZD5 -XPO1 INTERACTS_WITH SMURF1 -YES1 INTERACTS_WITH DOK1 -YES1 INTERACTS_WITH ITGB4 -YES1 INTERACTS_WITH KIT -YWHAB INTERACTS_WITH ITGB4 -YWHAB INTERACTS_WITH MAP3K3 -YWHAB INTERACTS_WITH MST1R -YWHAE INTERACTS_WITH MAP3K3 -YWHAE INTERACTS_WITH MST1R -YWHAG INTERACTS_WITH MAP3K3 -YWHAH INTERACTS_WITH MAP3K3 -YWHAH INTERACTS_WITH MST1R -YWHAQ INTERACTS_WITH ITGB4 -YWHAQ INTERACTS_WITH MAP3K3 -YWHAQ INTERACTS_WITH MST1R -YWHAZ INTERACTS_WITH MAP3K3 -YWHAZ INTERACTS_WITH MST1R -ZEB1 INTERACTS_WITH SMAD2 -ZFAND5 INTERACTS_WITH RIPK1 -ZFAND5 INTERACTS_WITH TNFAIP3 -ZFAND5 INTERACTS_WITH TRAF6 -ZFYVE9 INTERACTS_WITH SMAD2 -ZFYVE9 INTERACTS_WITH TGFBR2 diff --git a/core/src/main/resources/sample_data/network/nci-nature.sif b/core/src/main/resources/sample_data/network/nci-nature.sif deleted file mode 100644 index e2f68db6545..00000000000 --- a/core/src/main/resources/sample_data/network/nci-nature.sif +++ /dev/null @@ -1,27321 +0,0 @@ -AATF IN_SAME_COMPONENT RB1 -AATF IN_SAME_COMPONENT TFDP1 -AATF REACTS_WITH AATF -AATF REACTS_WITH HDAC1 -AATF REACTS_WITH RB1 -AATF REACTS_WITH TFDP1 -ABI1 IN_SAME_COMPONENT C3orf10 -ABI1 IN_SAME_COMPONENT CYFIP2 -ABI1 IN_SAME_COMPONENT EPS8 -ABI1 IN_SAME_COMPONENT ITGA4 -ABI1 IN_SAME_COMPONENT ITGB1 -ABI1 IN_SAME_COMPONENT NCKAP1 -ABI1 IN_SAME_COMPONENT SOS1 -ABI1 IN_SAME_COMPONENT VCAM1 -ABI1 IN_SAME_COMPONENT WASF2 -ABI1 IN_SAME_COMPONENT WASL -ABI1 REACTS_WITH ABI1 -ABI1 REACTS_WITH C3orf10 -ABI1 REACTS_WITH CYFIP2 -ABI1 REACTS_WITH EPS8 -ABI1 REACTS_WITH ITGA4 -ABI1 REACTS_WITH ITGB1 -ABI1 REACTS_WITH NCKAP1 -ABI1 REACTS_WITH SOS1 -ABI1 REACTS_WITH USP6NL -ABI1 REACTS_WITH VCAM1 -ABI1 REACTS_WITH WASF2 -ABI1 REACTS_WITH WASL -ABI1 STATE_CHANGE ACTR3 -ABI1 STATE_CHANGE ARPC1B -ABI1 STATE_CHANGE ARPC2 -ABI1 STATE_CHANGE ARPC3 -ABI1 STATE_CHANGE ARPC5 -ABI1 STATE_CHANGE DIAPH1 -ABI1 STATE_CHANGE DIAPH3 -ABI1 STATE_CHANGE RAC1 -ABI1 STATE_CHANGE WASF2 -ABI2 IN_SAME_COMPONENT C3orf10 -ABI2 IN_SAME_COMPONENT CYFIP2 -ABI2 IN_SAME_COMPONENT NCKAP1 -ABI2 IN_SAME_COMPONENT WASF1 -ABL1 CO_CONTROL BAIAP2 -ABL1 CO_CONTROL RAC1 -ABL1 IN_SAME_COMPONENT CABLES1 -ABL1 IN_SAME_COMPONENT RB1 -ABL1 IN_SAME_COMPONENT ROBO1 -ABL1 IN_SAME_COMPONENT SLIT1 -ABL1 IN_SAME_COMPONENT TERT -ABL1 REACTS_WITH ABL1 -ABL1 REACTS_WITH RB1 -ABL1 REACTS_WITH TERT -ABL1 STATE_CHANGE ABI1 -ABL1 STATE_CHANGE C3orf10 -ABL1 STATE_CHANGE CDH2 -ABL1 STATE_CHANGE CDK5 -ABL1 STATE_CHANGE CTNNA1 -ABL1 STATE_CHANGE CTNNB1 -ABL1 STATE_CHANGE CTNND1 -ABL1 STATE_CHANGE CYFIP2 -ABL1 STATE_CHANGE EPS8 -ABL1 STATE_CHANGE MDM2 -ABL1 STATE_CHANGE NCKAP1 -ABL1 STATE_CHANGE PDGFB -ABL1 STATE_CHANGE PDGFRB -ABL1 STATE_CHANGE PLCG1 -ABL1 STATE_CHANGE RAC1 -ABL1 STATE_CHANGE SOS1 -ABL1 STATE_CHANGE WASF2 -ABR STATE_CHANGE RAC1 -ABR STATE_CHANGE RHOA -ACAP1 CO_CONTROL ACAP1 -ACAP1 CO_CONTROL GULP1 -ACAP1 IN_SAME_COMPONENT CLTC -ACAP1 IN_SAME_COMPONENT GULP1 -ACAP1 IN_SAME_COMPONENT SLC2A4 -ACAP1 REACTS_WITH ACAP1 -ACAP1 REACTS_WITH CLTC -ACAP1 REACTS_WITH GULP1 -ACAP1 REACTS_WITH SLC2A4 -ACD IN_SAME_COMPONENT POT1 -ACD IN_SAME_COMPONENT TERF1 -ACD IN_SAME_COMPONENT TINF2 -ACD REACTS_WITH ACD -ACD REACTS_WITH POT1 -ACD REACTS_WITH TERF1 -ACD REACTS_WITH TERF2 -ACD REACTS_WITH TERF2IP -ACD REACTS_WITH TINF2 -ACP1 IN_SAME_COMPONENT EFNA1 -ACP1 IN_SAME_COMPONENT EPHA2 -ACP1 REACTS_WITH ACP1 -ACP1 REACTS_WITH EFNA1 -ACP1 REACTS_WITH EPHA2 -ACP1 STATE_CHANGE GRLF1 -ACTA1 REACTS_WITH ACTA1 -ACTA1 REACTS_WITH ACTN1 -ACTL6A CO_CONTROL MAX -ACTL6A CO_CONTROL MYC -ACTL6A IN_SAME_COMPONENT KAT5 -ACTL6A IN_SAME_COMPONENT MAX -ACTL6A IN_SAME_COMPONENT MYC -ACTL6A IN_SAME_COMPONENT RUVBL1 -ACTL6A IN_SAME_COMPONENT RUVBL2 -ACTL6A IN_SAME_COMPONENT TRRAP -ACTL6A METABOLIC_CATALYSIS CAD -ACTL6A METABOLIC_CATALYSIS GPAM -ACTL6A METABOLIC_CATALYSIS HSPD1 -ACTL6A METABOLIC_CATALYSIS NCL -ACTL6A METABOLIC_CATALYSIS NME1 -ACTL6A METABOLIC_CATALYSIS PTMA -ACTL6A REACTS_WITH ACTL6A -ACTL6A REACTS_WITH KAT5 -ACTL6A REACTS_WITH MAX -ACTL6A REACTS_WITH MYC -ACTL6A REACTS_WITH RUVBL1 -ACTL6A REACTS_WITH RUVBL2 -ACTL6A REACTS_WITH TRRAP -ACTN1 IN_SAME_COMPONENT SDC4 -ACTN1 REACTS_WITH ACTA1 -ACTN1 REACTS_WITH ACTN1 -ACTN1 REACTS_WITH SDC4 -ACTN1 STATE_CHANGE LPP -ACTN4 IN_SAME_COMPONENT RAB5A -ACTN4 IN_SAME_COMPONENT USP6NL -ACTN4 REACTS_WITH ACTN4 -ACTN4 REACTS_WITH RAB5A -ACTN4 REACTS_WITH USP6NL -ACTR3 IN_SAME_COMPONENT ARPC1B -ACTR3 IN_SAME_COMPONENT ARPC2 -ACTR3 IN_SAME_COMPONENT ARPC3 -ACTR3 IN_SAME_COMPONENT ARPC5 -ACVR1 IN_SAME_COMPONENT ACVR2A -ACVR1 IN_SAME_COMPONENT AMH -ACVR1 IN_SAME_COMPONENT AMHR2 -ACVR1 IN_SAME_COMPONENT BMP7 -ACVR1 IN_SAME_COMPONENT BMPR2 -ACVR1 IN_SAME_COMPONENT FKBP1A -ACVR1 REACTS_WITH ACVR1 -ACVR1 REACTS_WITH ACVR2A -ACVR1 REACTS_WITH AMH -ACVR1 REACTS_WITH AMHR2 -ACVR1 REACTS_WITH BMP7 -ACVR1 REACTS_WITH BMPR2 -ACVR1 REACTS_WITH FKBP1A -ACVR1 REACTS_WITH INHBA -ACVR2A IN_SAME_COMPONENT ACVR1 -ACVR2A IN_SAME_COMPONENT INHBA -ACVR2A REACTS_WITH ACVR1 -ACVR2A REACTS_WITH ACVR2A -ACVR2A REACTS_WITH INHBA -ACVRL1 CO_CONTROL ACVRL1 -ACVRL1 CO_CONTROL BMPR2 -ACVRL1 CO_CONTROL CAV1 -ACVRL1 CO_CONTROL GDF2 -ACVRL1 CO_CONTROL PPP1CA -ACVRL1 CO_CONTROL TGFB1 -ACVRL1 CO_CONTROL TGFBR1 -ACVRL1 CO_CONTROL TGFBR2 -ACVRL1 IN_SAME_COMPONENT BMPR2 -ACVRL1 IN_SAME_COMPONENT CAV1 -ACVRL1 IN_SAME_COMPONENT CSNK2B -ACVRL1 IN_SAME_COMPONENT FKBP1A -ACVRL1 IN_SAME_COMPONENT GDF2 -ACVRL1 IN_SAME_COMPONENT INHBA -ACVRL1 IN_SAME_COMPONENT PPP1CA -ACVRL1 IN_SAME_COMPONENT TGFB1 -ACVRL1 IN_SAME_COMPONENT TGFB3 -ACVRL1 IN_SAME_COMPONENT TGFBR1 -ACVRL1 IN_SAME_COMPONENT TGFBR2 -ACVRL1 REACTS_WITH ACVRL1 -ACVRL1 REACTS_WITH BMPR2 -ACVRL1 REACTS_WITH CAV1 -ACVRL1 REACTS_WITH CSNK2B -ACVRL1 REACTS_WITH FKBP1A -ACVRL1 REACTS_WITH GDF2 -ACVRL1 REACTS_WITH INHBA -ACVRL1 REACTS_WITH PPP1CA -ACVRL1 REACTS_WITH TGFB1 -ACVRL1 REACTS_WITH TGFB3 -ACVRL1 REACTS_WITH TGFBR1 -ACVRL1 REACTS_WITH TGFBR2 -ADAM10 STATE_CHANGE CDH1 -ADAM10 STATE_CHANGE CDH2 -ADAM10 STATE_CHANGE CTNNA1 -ADAM10 STATE_CHANGE CTNND1 -ADAM10 STATE_CHANGE DLL1 -ADAM10 STATE_CHANGE DTX1 -ADAM10 STATE_CHANGE NOTCH1 -ADAM12 IN_SAME_COMPONENT ITGA9 -ADAM12 IN_SAME_COMPONENT ITGB1 -ADAM12 IN_SAME_COMPONENT SDC4 -ADAM12 INTERACTS_WITH PRKCA -ADAM12 INTERACTS_WITH RHOA -ADAM12 REACTS_WITH ADAM12 -ADAM12 REACTS_WITH ITGA9 -ADAM12 REACTS_WITH ITGB1 -ADAM12 REACTS_WITH SDC4 -ADAM12 STATE_CHANGE DLL1 -ADAM15 IN_SAME_COMPONENT ITGA9 -ADAM15 IN_SAME_COMPONENT ITGB1 -ADAM15 REACTS_WITH ADAM15 -ADAM15 REACTS_WITH ITGA9 -ADAM15 REACTS_WITH ITGB1 -ADAM17 STATE_CHANGE BDNF -ADAM17 STATE_CHANGE ERBB2 -ADAM17 STATE_CHANGE NGFR -ADAM17 STATE_CHANGE SORT1 -ADAM17 STATE_CHANGE TNF -ADAM17 STATE_CHANGE TNFRSF1B -ADAM17 STATE_CHANGE TRAF6 -ADAM17 STATE_CHANGE ZNF274 -ADAM28 IN_SAME_COMPONENT ITGA4 -ADAM28 IN_SAME_COMPONENT ITGB1 -ADAM28 REACTS_WITH ADAM28 -ADAM28 REACTS_WITH ITGA4 -ADAM28 REACTS_WITH ITGB1 -ADAM2 IN_SAME_COMPONENT ITGA9 -ADAM2 IN_SAME_COMPONENT ITGB1 -ADAM2 REACTS_WITH ADAM2 -ADAM2 REACTS_WITH ITGA9 -ADAM2 REACTS_WITH ITGB1 -ADAM8 IN_SAME_COMPONENT ITGA9 -ADAM8 IN_SAME_COMPONENT ITGB1 -ADAM8 REACTS_WITH ADAM8 -ADAM8 REACTS_WITH ITGA9 -ADAM8 REACTS_WITH ITGB1 -ADAP1 CO_CONTROL ADAP1 -ADAP1 CO_CONTROL KIF13B -ADAP1 IN_SAME_COMPONENT KIF13B -ADAP1 REACTS_WITH ADAP1 -ADAP1 REACTS_WITH KIF13B -ADCY7 IN_SAME_COMPONENT CTNNB1 -ADCY7 IN_SAME_COMPONENT TCF7L2 -ADCY7 METABOLIC_CATALYSIS INCENP -ADCY7 REACTS_WITH ADCY7 -ADCY7 REACTS_WITH CTNNB1 -ADCY7 REACTS_WITH TCF7L2 -ADRBK1 STATE_CHANGE CXCL12 -ADRBK1 STATE_CHANGE CXCR1 -ADRBK1 STATE_CHANGE CXCR4 -ADRBK1 STATE_CHANGE GNG2 -ADRBK1 STATE_CHANGE HDAC5 -ADRBK1 STATE_CHANGE IL8 -ADRBK1 STATE_CHANGE SMO -ADRBK2 STATE_CHANGE F2R -AES IN_SAME_COMPONENT CREBBP -AES IN_SAME_COMPONENT CTBP1 -AES IN_SAME_COMPONENT CTNNB1 -AES IN_SAME_COMPONENT HNF1A -AES IN_SAME_COMPONENT LEF1 -AES IN_SAME_COMPONENT TLE1 -AES METABOLIC_CATALYSIS CCND1 -AES METABOLIC_CATALYSIS MYC -AES METABOLIC_CATALYSIS PPARD -AES REACTS_WITH AES -AES REACTS_WITH CREBBP -AES REACTS_WITH CTBP1 -AES REACTS_WITH CTNNB1 -AES REACTS_WITH HNF1A -AES REACTS_WITH LEF1 -AES REACTS_WITH TLE1 -AGAP2 IN_SAME_COMPONENT EPB41L1 -AGAP2 IN_SAME_COMPONENT PIK3CA -AGAP2 IN_SAME_COMPONENT PIK3R1 -AGAP2 METABOLIC_CATALYSIS CCND1 -AGAP2 REACTS_WITH AGAP2 -AGAP2 REACTS_WITH EPB41L1 -AGAP2 REACTS_WITH PIK3CA -AGAP2 REACTS_WITH PIK3R1 -AGER IN_SAME_COMPONENT HMGB1 -AGER IN_SAME_COMPONENT ITGAM -AGER IN_SAME_COMPONENT ITGB2 -AGER REACTS_WITH AGER -AGER REACTS_WITH HMGB1 -AGER REACTS_WITH ITGAM -AGER REACTS_WITH ITGB2 -AGER STATE_CHANGE NFKB1 -AGRP IN_SAME_COMPONENT MC4R -AGRP IN_SAME_COMPONENT SDC3 -AGRP REACTS_WITH AGRP -AGRP REACTS_WITH MC4R -AGRP REACTS_WITH POMC -AGRP REACTS_WITH SDC3 -AGTR1 METABOLIC_CATALYSIS ANGPT2 -AHSG IN_SAME_COMPONENT BMP6 -AHSG REACTS_WITH AHSG -AHSG REACTS_WITH BAMBI -AHSG REACTS_WITH BMP6 -AHSG REACTS_WITH BMPR2 -AKAP13 CO_CONTROL CDKN1B -AKAP13 STATE_CHANGE RHOA -AKAP1 STATE_CHANGE KDR -AKAP1 STATE_CHANGE PRKACA -AKAP1 STATE_CHANGE VEGFA -AKAP5 IN_SAME_COMPONENT PRKACA -AKAP5 REACTS_WITH AKAP5 -AKAP5 REACTS_WITH PRKACA -AKT1 CO_CONTROL BCL10 -AKT1 CO_CONTROL CARD11 -AKT1 CO_CONTROL MALT1 -AKT1 CO_CONTROL MAP3K7 -AKT1 CO_CONTROL NCOA1 -AKT1 CO_CONTROL PDPK1 -AKT1 CO_CONTROL RHEB -AKT1 CO_CONTROL TRAF6 -AKT1 IN_SAME_COMPONENT DKC1 -AKT1 IN_SAME_COMPONENT HSP90AA1 -AKT1 IN_SAME_COMPONENT MAP3K5 -AKT1 IN_SAME_COMPONENT MAP3K8 -AKT1 IN_SAME_COMPONENT MTOR -AKT1 IN_SAME_COMPONENT PTGES3 -AKT1 IN_SAME_COMPONENT PTPN1 -AKT1 IN_SAME_COMPONENT RAF1 -AKT1 IN_SAME_COMPONENT RPS6KB1 -AKT1 IN_SAME_COMPONENT TERT -AKT1 INTERACTS_WITH CDKN1B -AKT1 INTERACTS_WITH ICAM1 -AKT1 INTERACTS_WITH ITGAM -AKT1 INTERACTS_WITH ITGB2 -AKT1 INTERACTS_WITH PRKCZ -AKT1 METABOLIC_CATALYSIS GLI2 -AKT1 METABOLIC_CATALYSIS MCL1 -AKT1 METABOLIC_CATALYSIS MYC -AKT1 METABOLIC_CATALYSIS PCK2 -AKT1 METABOLIC_CATALYSIS TERT -AKT1 REACTS_WITH AKT1 -AKT1 REACTS_WITH DKC1 -AKT1 REACTS_WITH HSP90AA1 -AKT1 REACTS_WITH MAP3K5 -AKT1 REACTS_WITH MAP3K8 -AKT1 REACTS_WITH MTOR -AKT1 REACTS_WITH PTGES3 -AKT1 REACTS_WITH PTPN1 -AKT1 REACTS_WITH RAF1 -AKT1 REACTS_WITH RPS6KB1 -AKT1 REACTS_WITH TERT -AKT1S1 IN_SAME_COMPONENT DEPTOR -AKT1S1 IN_SAME_COMPONENT MLST8 -AKT1S1 IN_SAME_COMPONENT MTOR -AKT1S1 IN_SAME_COMPONENT RPTOR -AKT1S1 REACTS_WITH AKT1S1 -AKT1S1 REACTS_WITH DEPTOR -AKT1S1 REACTS_WITH MLST8 -AKT1S1 REACTS_WITH MTOR -AKT1S1 REACTS_WITH RPTOR -AKT1 STATE_CHANGE AKT1S1 -AKT1 STATE_CHANGE AKT2 -AKT1 STATE_CHANGE APPL1 -AKT1 STATE_CHANGE BAD -AKT1 STATE_CHANGE CASP9 -AKT1 STATE_CHANGE CDKN1A -AKT1 STATE_CHANGE CDKN1B -AKT1 STATE_CHANGE CHUK -AKT1 STATE_CHANGE DEPTOR -AKT1 STATE_CHANGE EIF4EBP1 -AKT1 STATE_CHANGE FOXA2 -AKT1 STATE_CHANGE FOXO1 -AKT1 STATE_CHANGE FOXO3 -AKT1 STATE_CHANGE FOXO4 -AKT1 STATE_CHANGE GSK3B -AKT1 STATE_CHANGE HSP90AA1 -AKT1 STATE_CHANGE IKBKB -AKT1 STATE_CHANGE IKBKG -AKT1 STATE_CHANGE INS -AKT1 STATE_CHANGE INSR -AKT1 STATE_CHANGE MAP3K14 -AKT1 STATE_CHANGE MDM2 -AKT1 STATE_CHANGE MLST8 -AKT1 STATE_CHANGE MST1 -AKT1 STATE_CHANGE MST1R -AKT1 STATE_CHANGE MTOR -AKT1 STATE_CHANGE NCOR2 -AKT1 STATE_CHANGE NFKB1 -AKT1 STATE_CHANGE NOS3 -AKT1 STATE_CHANGE NRIP1 -AKT1 STATE_CHANGE RAF1 -AKT1 STATE_CHANGE RALGDS -AKT1 STATE_CHANGE RARA -AKT1 STATE_CHANGE RPS6KB1 -AKT1 STATE_CHANGE RPTOR -AKT1 STATE_CHANGE TBC1D4 -AKT1 STATE_CHANGE TERT -AKT1 STATE_CHANGE TSC1 -AKT1 STATE_CHANGE TSC2 -AKT1 STATE_CHANGE UBE2D1 -AKT1 STATE_CHANGE USP8 -AKT1 STATE_CHANGE YWHAE -AKT2 CO_CONTROL CDKN1A -AKT2 IN_SAME_COMPONENT CDKN1A -AKT2 REACTS_WITH AKT2 -AKT2 REACTS_WITH CDKN1A -AKT2 STATE_CHANGE GSK3B -AKT2 STATE_CHANGE TBC1D4 -AMH IN_SAME_COMPONENT ACVR1 -AMH IN_SAME_COMPONENT AMHR2 -AMHR2 IN_SAME_COMPONENT ACVR1 -AMHR2 IN_SAME_COMPONENT AMH -AMHR2 REACTS_WITH ACVR1 -AMHR2 REACTS_WITH AMH -AMHR2 REACTS_WITH AMHR2 -AMHR2 REACTS_WITH FKBP1A -AMH REACTS_WITH ACVR1 -AMH REACTS_WITH AMH -AMH REACTS_WITH AMHR2 -AMH REACTS_WITH FKBP1A -AMICA1 REACTS_WITH AMICA1 -AMPH CO_CONTROL DNM1 -AMPH CO_CONTROL SH3GL2 -AMPH CO_CONTROL SH3KBP1 -AMPH CO_CONTROL SYNJ1 -AMPH STATE_CHANGE EGF -AMPH STATE_CHANGE EGFR -ANGPT1 IN_SAME_COMPONENT GRB14 -ANGPT1 IN_SAME_COMPONENT GRB7 -ANGPT1 IN_SAME_COMPONENT ITGA5 -ANGPT1 IN_SAME_COMPONENT ITGB1 -ANGPT1 IN_SAME_COMPONENT SHC1 -ANGPT1 IN_SAME_COMPONENT TEK -ANGPT1 IN_SAME_COMPONENT TNIP2 -ANGPT1 METABOLIC_CATALYSIS ELF2 -ANGPT1 REACTS_WITH ANGPT1 -ANGPT1 REACTS_WITH GRB14 -ANGPT1 REACTS_WITH GRB7 -ANGPT1 REACTS_WITH ITGA5 -ANGPT1 REACTS_WITH ITGB1 -ANGPT1 REACTS_WITH SHC1 -ANGPT1 REACTS_WITH TEK -ANGPT1 REACTS_WITH TNIP2 -ANGPT1 STATE_CHANGE BMX -ANGPT1 STATE_CHANGE CRK -ANGPT1 STATE_CHANGE DOK2 -ANGPT1 STATE_CHANGE FES -ANGPT1 STATE_CHANGE MAPK14 -ANGPT1 STATE_CHANGE MAPK8 -ANGPT1 STATE_CHANGE MMP2 -ANGPT1 STATE_CHANGE NCK1 -ANGPT1 STATE_CHANGE PIK3CA -ANGPT1 STATE_CHANGE PIK3R1 -ANGPT1 STATE_CHANGE PLD2 -ANGPT1 STATE_CHANGE PLG -ANGPT1 STATE_CHANGE RASA1 -ANGPT2 IN_SAME_COMPONENT TEK -ANGPT2 METABOLIC_CATALYSIS CDKN1A -ANGPT2 REACTS_WITH ANGPT2 -ANGPT2 REACTS_WITH TEK -ANGPT2 STATE_CHANGE FES -ANGPT2 STATE_CHANGE FYN -ANGPT2 STATE_CHANGE MAPK14 -ANGPT2 STATE_CHANGE PIK3CA -ANGPT2 STATE_CHANGE PIK3R1 -ANGPT2 STATE_CHANGE STAT5A -ANGPTL3 IN_SAME_COMPONENT ITGAV -ANGPTL3 IN_SAME_COMPONENT ITGB3 -ANGPTL3 REACTS_WITH ANGPTL3 -ANGPTL3 REACTS_WITH ITGAV -ANGPTL3 REACTS_WITH ITGB3 -ANKRA2 IN_SAME_COMPONENT HDAC4 -ANKRA2 IN_SAME_COMPONENT HDAC5 -ANKRA2 REACTS_WITH ANKRA2 -ANKRA2 REACTS_WITH HDAC4 -ANKRA2 REACTS_WITH HDAC5 -AP1M1 IN_SAME_COMPONENT PIP5K1C -AP1M1 REACTS_WITH AP1M1 -AP1M1 REACTS_WITH PIP5K1C -AP1M1 STATE_CHANGE CDH1 -AP1M1 STATE_CHANGE CTNNB1 -AP2A1 IN_SAME_COMPONENT AP2M1 -AP2A1 REACTS_WITH CD4 -AP2M1 IN_SAME_COMPONENT AP2A1 -AP2M1 REACTS_WITH CD4 -APAF1 IN_SAME_COMPONENT CASP9 -APAF1 STATE_CHANGE CASP3 -APAF1 STATE_CHANGE CASP6 -APAF1 STATE_CHANGE CASP7 -APC IN_SAME_COMPONENT ARHGEF4 -APC IN_SAME_COMPONENT AXIN1 -APC IN_SAME_COMPONENT AXIN2 -APC IN_SAME_COMPONENT CTBP1 -APC IN_SAME_COMPONENT CTNNB1 -APC IN_SAME_COMPONENT DLG1 -APC IN_SAME_COMPONENT SPATA13 -APC REACTS_WITH APC -APC REACTS_WITH ARHGEF4 -APC REACTS_WITH AXIN1 -APC REACTS_WITH AXIN2 -APC REACTS_WITH CTBP1 -APC REACTS_WITH CTNNB1 -APC REACTS_WITH DLG1 -APC REACTS_WITH FZD5 -APC REACTS_WITH LRP6 -APC REACTS_WITH WNT3A -APC STATE_CHANGE CDC42 -APC STATE_CHANGE RAC1 -APEX1 STATE_CHANGE ARNT -APEX1 STATE_CHANGE EPAS1 -APH1A IN_SAME_COMPONENT APH1B -APH1A IN_SAME_COMPONENT NCSTN -APH1A IN_SAME_COMPONENT PSEN1 -APH1A IN_SAME_COMPONENT PSENEN -APH1A STATE_CHANGE CNTN1 -APH1A STATE_CHANGE CNTN6 -APH1A STATE_CHANGE CTNNB1 -APH1A STATE_CHANGE DLL1 -APH1A STATE_CHANGE DLL4 -APH1A STATE_CHANGE DNER -APH1A STATE_CHANGE FBXW11 -APH1A STATE_CHANGE NOTCH1 -APH1A STATE_CHANGE NOTCH2 -APH1A STATE_CHANGE NOTCH3 -APH1A STATE_CHANGE NOTCH4 -APH1A STATE_CHANGE SDC3 -APH1A STATE_CHANGE SORT1 -APH1A STATE_CHANGE TRAF6 -APH1A STATE_CHANGE ZNF274 -APH1B IN_SAME_COMPONENT APH1A -APH1B IN_SAME_COMPONENT NCSTN -APH1B IN_SAME_COMPONENT PSEN1 -APH1B IN_SAME_COMPONENT PSENEN -APH1B STATE_CHANGE CNTN1 -APH1B STATE_CHANGE CNTN6 -APH1B STATE_CHANGE CTNNB1 -APH1B STATE_CHANGE DLL1 -APH1B STATE_CHANGE DLL4 -APH1B STATE_CHANGE DNER -APH1B STATE_CHANGE FBXW11 -APH1B STATE_CHANGE NOTCH1 -APH1B STATE_CHANGE NOTCH2 -APH1B STATE_CHANGE NOTCH3 -APH1B STATE_CHANGE NOTCH4 -APH1B STATE_CHANGE SDC3 -APH1B STATE_CHANGE SORT1 -APH1B STATE_CHANGE TRAF6 -APH1B STATE_CHANGE ZNF274 -APOB IN_SAME_COMPONENT ITGAM -APOB IN_SAME_COMPONENT ITGB2 -APOB IN_SAME_COMPONENT LPA -APOB REACTS_WITH APOB -APOB REACTS_WITH ITGAM -APOB REACTS_WITH ITGB2 -APOB REACTS_WITH LPA -APPBP2 STATE_CHANGE AR -APP IN_SAME_COMPONENT GPC1 -APP IN_SAME_COMPONENT NGFR -APPL1 CO_CONTROL AR -APPL1 METABOLIC_CATALYSIS KLK3 -APP REACTS_WITH APP -APP REACTS_WITH GPC1 -APP REACTS_WITH NGFR -AQP3 REACTS_WITH AQP5 -AQP5 REACTS_WITH AQP3 -ARAP1 STATE_CHANGE RHOA -ARAP3 IN_SAME_COMPONENT RAP1A -ARAP3 REACTS_WITH ARAP3 -ARAP3 REACTS_WITH RAP1A -ARAP3 STATE_CHANGE RHOA -AR CO_CONTROL APPL1 -AR CO_CONTROL AR -AR CO_CONTROL BRCA1 -AR CO_CONTROL CARM1 -AR CO_CONTROL CASP8 -AR CO_CONTROL CCND1 -AR CO_CONTROL CCND3 -AR CO_CONTROL CDK6 -AR CO_CONTROL CEBPA -AR CO_CONTROL CMTM2 -AR CO_CONTROL CTDSP1 -AR CO_CONTROL CTDSP2 -AR CO_CONTROL CTNNB1 -AR CO_CONTROL EGR1 -AR CO_CONTROL EHMT2 -AR CO_CONTROL FHL2 -AR CO_CONTROL FKBP4 -AR CO_CONTROL FOXA1 -AR CO_CONTROL FOXO1 -AR CO_CONTROL GATA2 -AR CO_CONTROL GSN -AR CO_CONTROL HDAC1 -AR CO_CONTROL HDAC7 -AR CO_CONTROL HIP1 -AR CO_CONTROL HNRNPA1 -AR CO_CONTROL HOXB13 -AR CO_CONTROL JUN -AR CO_CONTROL KDM1A -AR CO_CONTROL KDM3A -AR CO_CONTROL KDM4C -AR CO_CONTROL LATS2 -AR CO_CONTROL MAK -AR CO_CONTROL MDM2 -AR CO_CONTROL MED1 -AR CO_CONTROL MYST2 -AR CO_CONTROL NCOA1 -AR CO_CONTROL NCOA2 -AR CO_CONTROL NCOA6 -AR CO_CONTROL NR2C1 -AR CO_CONTROL NR2C2 -AR CO_CONTROL NRIP1 -AR CO_CONTROL PA2G4 -AR CO_CONTROL PATZ1 -AR CO_CONTROL PAWR -AR CO_CONTROL PELP1 -AR CO_CONTROL PIAS1 -AR CO_CONTROL PIAS3 -AR CO_CONTROL PIAS4 -AR CO_CONTROL POU2F1 -AR CO_CONTROL PRKDC -AR CO_CONTROL PTK2B -AR CO_CONTROL REL -AR CO_CONTROL RPS6KA3 -AR CO_CONTROL SMARCA2 -AR CO_CONTROL SMARCC1 -AR CO_CONTROL SMARCE1 -AR CO_CONTROL SPDEF -AR CO_CONTROL SRC -AR CO_CONTROL SRF -AR CO_CONTROL SRY -AR CO_CONTROL SVIL -AR CO_CONTROL TCF4 -AR CO_CONTROL TGFB1I1 -AR CO_CONTROL TGIF1 -AR CO_CONTROL TMF1 -AR CO_CONTROL TRIM24 -AR CO_CONTROL UBA3 -AR CO_CONTROL UBE3A -AR CO_CONTROL VAV3 -AR CO_CONTROL XRCC5 -AR CO_CONTROL XRCC6 -AR CO_CONTROL ZMIZ2 -AREG IN_SAME_COMPONENT EGFR -AREG IN_SAME_COMPONENT ERBB2 -AREG IN_SAME_COMPONENT ERBB3 -AREG REACTS_WITH AREG -AREG REACTS_WITH EGFR -AREG REACTS_WITH ERBB2 -AREG REACTS_WITH ERBB3 -ARF4 REACTS_WITH ARF4 -ARF4 STATE_CHANGE PLD2 -ARFGAP1 CO_CONTROL ARFGAP1 -ARFGAP1 CO_CONTROL ASAP1 -ARFGAP1 CO_CONTROL GGA3 -ARFGAP1 CO_CONTROL KDELR1 -ARFGAP1 IN_SAME_COMPONENT CLTA -ARFGAP1 IN_SAME_COMPONENT CLTB -ARFGAP1 IN_SAME_COMPONENT COPA -ARFGAP1 IN_SAME_COMPONENT GGA3 -ARFGAP1 IN_SAME_COMPONENT KDELR1 -ARFGAP1 REACTS_WITH ARFGAP1 -ARFGAP1 REACTS_WITH CLTA -ARFGAP1 REACTS_WITH CLTB -ARFGAP1 REACTS_WITH COPA -ARFGAP1 REACTS_WITH GGA3 -ARFGAP1 REACTS_WITH KDELR1 -ARFGAP1 STATE_CHANGE ARFGAP1 -ARFGAP1 STATE_CHANGE CLTA -ARFGAP1 STATE_CHANGE CLTB -ARFGAP1 STATE_CHANGE COPA -ARFIP2 IN_SAME_COMPONENT RAC1 -ARFIP2 REACTS_WITH ARFIP2 -ARFIP2 REACTS_WITH RAC1 -ARFIP2 STATE_CHANGE PLD2 -ARHGAP17 STATE_CHANGE CDC42 -ARHGAP17 STATE_CHANGE RAC1 -ARHGAP1 STATE_CHANGE CDC42 -ARHGAP1 STATE_CHANGE RAC1 -ARHGAP26 REACTS_WITH ARHGAP26 -ARHGAP26 STATE_CHANGE RHOA -ARHGAP32 IN_SAME_COMPONENT NGF -ARHGAP32 REACTS_WITH ARHGAP32 -ARHGAP32 REACTS_WITH NGF -ARHGAP4 STATE_CHANGE RHOA -ARHGAP5 STATE_CHANGE RHOA -ARHGAP6 STATE_CHANGE RHOA -ARHGAP8 STATE_CHANGE RHOA -ARHGAP9 STATE_CHANGE RAC1 -ARHGAP9 STATE_CHANGE RHOA -ARHGDIA CO_CONTROL MCF2 -ARHGDIA IN_SAME_COMPONENT LINGO1 -ARHGDIA IN_SAME_COMPONENT NGFR -ARHGDIA IN_SAME_COMPONENT RAC1 -ARHGDIA IN_SAME_COMPONENT RHOA -ARHGDIA IN_SAME_COMPONENT RTN4R -ARHGDIA REACTS_WITH ARHGDIA -ARHGDIA REACTS_WITH LINGO1 -ARHGDIA REACTS_WITH NGFR -ARHGDIA REACTS_WITH RAC1 -ARHGDIA REACTS_WITH RHOA -ARHGDIA REACTS_WITH RTN4R -ARHGDIA STATE_CHANGE CDC42 -ARHGDIA STATE_CHANGE RAC1 -ARHGDIB IN_SAME_COMPONENT RHOA -ARHGDIB REACTS_WITH ARHGDIB -ARHGDIB REACTS_WITH RHOA -ARHGDIG IN_SAME_COMPONENT RHOA -ARHGDIG REACTS_WITH ARHGDIG -ARHGDIG REACTS_WITH RHOA -ARHGEF10L STATE_CHANGE RHOA -ARHGEF10 STATE_CHANGE RHOA -ARHGEF11 STATE_CHANGE RHOA -ARHGEF12 STATE_CHANGE RHOA -ARHGEF15 IN_SAME_COMPONENT EFNA1 -ARHGEF15 IN_SAME_COMPONENT EPHA4 -ARHGEF15 REACTS_WITH ARHGEF15 -ARHGEF15 REACTS_WITH EFNA1 -ARHGEF15 REACTS_WITH EPHA4 -ARHGEF15 STATE_CHANGE RHOA -ARHGEF17 STATE_CHANGE RHOA -ARHGEF18 STATE_CHANGE RHOA -ARHGEF1 CO_CONTROL CDKN1B -ARHGEF1 IN_SAME_COMPONENT GNA13 -ARHGEF1 REACTS_WITH ARHGEF1 -ARHGEF1 REACTS_WITH GNA13 -ARHGEF1 STATE_CHANGE RHOA -ARHGEF25 STATE_CHANGE CDC42 -ARHGEF25 STATE_CHANGE RAC1 -ARHGEF25 STATE_CHANGE RHOA -ARHGEF2 IN_SAME_COMPONENT DAB1 -ARHGEF2 IN_SAME_COMPONENT FYN -ARHGEF2 IN_SAME_COMPONENT LRP8 -ARHGEF2 IN_SAME_COMPONENT MAP2K7 -ARHGEF2 IN_SAME_COMPONENT MAP3K11 -ARHGEF2 IN_SAME_COMPONENT MAPK8 -ARHGEF2 IN_SAME_COMPONENT RELN -ARHGEF2 REACTS_WITH ARHGEF2 -ARHGEF2 REACTS_WITH DAB1 -ARHGEF2 REACTS_WITH FYN -ARHGEF2 REACTS_WITH LRP8 -ARHGEF2 REACTS_WITH MAP2K7 -ARHGEF2 REACTS_WITH MAP3K11 -ARHGEF2 REACTS_WITH MAPK8 -ARHGEF2 REACTS_WITH RELN -ARHGEF2 STATE_CHANGE RAC1 -ARHGEF2 STATE_CHANGE RHOA -ARHGEF3 STATE_CHANGE RHOA -ARHGEF4 IN_SAME_COMPONENT APC -ARHGEF4 REACTS_WITH APC -ARHGEF4 REACTS_WITH ARHGEF4 -ARHGEF4 STATE_CHANGE RAC1 -ARHGEF5 STATE_CHANGE RHOA -ARHGEF6 STATE_CHANGE CDC42 -ARHGEF6 STATE_CHANGE RAC1 -ARHGEF7 IN_SAME_COMPONENT CBL -ARHGEF7 IN_SAME_COMPONENT CDC42 -ARHGEF7 IN_SAME_COMPONENT GIT1 -ARHGEF7 IN_SAME_COMPONENT GIT2 -ARHGEF7 IN_SAME_COMPONENT PAK1 -ARHGEF7 IN_SAME_COMPONENT PLCG1 -ARHGEF7 IN_SAME_COMPONENT PXN -ARHGEF7 IN_SAME_COMPONENT RAC1 -ARHGEF7 REACTS_WITH ARHGEF7 -ARHGEF7 REACTS_WITH AURKA -ARHGEF7 REACTS_WITH CBL -ARHGEF7 REACTS_WITH CDC42 -ARHGEF7 REACTS_WITH GIT1 -ARHGEF7 REACTS_WITH GIT2 -ARHGEF7 REACTS_WITH PAK1 -ARHGEF7 REACTS_WITH PXN -ARHGEF7 REACTS_WITH RAC1 -ARHGEF7 STATE_CHANGE CDC42 -ARHGEF7 STATE_CHANGE RAC1 -ARHGEF9 STATE_CHANGE CDC42 -AR IN_SAME_COMPONENT CARM1 -AR IN_SAME_COMPONENT CASP8 -AR IN_SAME_COMPONENT CCND1 -AR IN_SAME_COMPONENT CCND3 -AR IN_SAME_COMPONENT CDK6 -AR IN_SAME_COMPONENT CTNNB1 -AR IN_SAME_COMPONENT FOXA1 -AR IN_SAME_COMPONENT HEY1 -AR IN_SAME_COMPONENT HSP90AA1 -AR IN_SAME_COMPONENT KAT5 -AR IN_SAME_COMPONENT NCOA1 -AR IN_SAME_COMPONENT NCOA2 -AR IN_SAME_COMPONENT NCOA4 -AR IN_SAME_COMPONENT NR0B1 -AR IN_SAME_COMPONENT NR3C1 -AR IN_SAME_COMPONENT PELP1 -AR IN_SAME_COMPONENT PIK3CA -AR IN_SAME_COMPONENT PIK3R1 -AR IN_SAME_COMPONENT PRDX1 -AR IN_SAME_COMPONENT SMAD4 -AR IN_SAME_COMPONENT SNURF -AR IN_SAME_COMPONENT SRC -AR IN_SAME_COMPONENT UBE2I -AR METABOLIC_CATALYSIS FHL2 -AR METABOLIC_CATALYSIS KLK2 -AR METABOLIC_CATALYSIS KLK3 -AR METABOLIC_CATALYSIS NKX3-1 -AR METABOLIC_CATALYSIS PDE9A -AR METABOLIC_CATALYSIS SMARCC1 -AR METABOLIC_CATALYSIS TMPRSS2 -ARNT CO_CONTROL CREB1 -ARNT CO_CONTROL FOS -ARNT CO_CONTROL GATA2 -ARNT CO_CONTROL HNF4A -ARNT CO_CONTROL JUN -ARNT CO_CONTROL NCOA2 -ARNT CO_CONTROL SP1 -ARNT IN_SAME_COMPONENT EPAS1 -ARNT IN_SAME_COMPONENT HDAC7 -ARNT IN_SAME_COMPONENT HEY2 -ARNT IN_SAME_COMPONENT HIF1A -ARNT IN_SAME_COMPONENT HIF3A -ARNT IN_SAME_COMPONENT NCOA1 -ARNT IN_SAME_COMPONENT SIRT1 -ARNT IN_SAME_COMPONENT SMAD4 -ARNT IN_SAME_COMPONENT SP1 -ARNTL IN_SAME_COMPONENT CLOCK -ARNTL IN_SAME_COMPONENT DEC1 -ARNTL IN_SAME_COMPONENT NPAS2 -ARNTL METABOLIC_CATALYSIS NR1D1 -ARNTL METABOLIC_CATALYSIS TIMELESS -ARNTL REACTS_WITH ARNTL -ARNTL REACTS_WITH BHLHE40 -ARNTL REACTS_WITH CLOCK -ARNTL REACTS_WITH DEC1 -ARNTL REACTS_WITH NPAS2 -ARNT METABOLIC_CATALYSIS ABCB1 -ARNT METABOLIC_CATALYSIS ABCG2 -ARNT METABOLIC_CATALYSIS ADM -ARNT METABOLIC_CATALYSIS ADORA2A -ARNT METABOLIC_CATALYSIS ALDOA -ARNT METABOLIC_CATALYSIS BHLHE40 -ARNT METABOLIC_CATALYSIS BHLHE41 -ARNT METABOLIC_CATALYSIS BNIP3 -ARNT METABOLIC_CATALYSIS CA9 -ARNT METABOLIC_CATALYSIS CITED2 -ARNT METABOLIC_CATALYSIS CP -ARNT METABOLIC_CATALYSIS CXCL12 -ARNT METABOLIC_CATALYSIS CXCR4 -ARNT METABOLIC_CATALYSIS EDN1 -ARNT METABOLIC_CATALYSIS EFNA1 -ARNT METABOLIC_CATALYSIS EGLN1 -ARNT METABOLIC_CATALYSIS EGLN3 -ARNT METABOLIC_CATALYSIS ENG -ARNT METABOLIC_CATALYSIS ENO1 -ARNT METABOLIC_CATALYSIS EPO -ARNT METABOLIC_CATALYSIS ETS1 -ARNT METABOLIC_CATALYSIS FECH -ARNT METABOLIC_CATALYSIS FLT1 -ARNT METABOLIC_CATALYSIS FURIN -ARNT METABOLIC_CATALYSIS FXN -ARNT METABOLIC_CATALYSIS GCK -ARNT METABOLIC_CATALYSIS HK1 -ARNT METABOLIC_CATALYSIS HK2 -ARNT METABOLIC_CATALYSIS HMOX1 -ARNT METABOLIC_CATALYSIS ID2 -ARNT METABOLIC_CATALYSIS IGFBP1 -ARNT METABOLIC_CATALYSIS ITGB2 -ARNT METABOLIC_CATALYSIS KDR -ARNT METABOLIC_CATALYSIS LDHA -ARNT METABOLIC_CATALYSIS LEP -ARNT METABOLIC_CATALYSIS MCL1 -ARNT METABOLIC_CATALYSIS MMP14 -ARNT METABOLIC_CATALYSIS NDRG1 -ARNT METABOLIC_CATALYSIS NOS2 -ARNT METABOLIC_CATALYSIS NT5E -ARNT METABOLIC_CATALYSIS PFKFB3 -ARNT METABOLIC_CATALYSIS PFKL -ARNT METABOLIC_CATALYSIS PGK1 -ARNT METABOLIC_CATALYSIS PGM1 -ARNT METABOLIC_CATALYSIS PKM2 -ARNT METABOLIC_CATALYSIS PLIN2 -ARNT METABOLIC_CATALYSIS POU5F1 -ARNT METABOLIC_CATALYSIS SERPINE1 -ARNT METABOLIC_CATALYSIS SLC11A2 -ARNT METABOLIC_CATALYSIS SLC2A1 -ARNT METABOLIC_CATALYSIS TERT -ARNT METABOLIC_CATALYSIS TF -ARNT METABOLIC_CATALYSIS TFF3 -ARNT METABOLIC_CATALYSIS TFRC -ARNT METABOLIC_CATALYSIS TWIST1 -ARNT METABOLIC_CATALYSIS VEGFA -ARNT REACTS_WITH ARNT -ARNT REACTS_WITH CITED2 -ARNT REACTS_WITH EPAS1 -ARNT REACTS_WITH HDAC7 -ARNT REACTS_WITH HEY2 -ARNT REACTS_WITH HIF1A -ARNT REACTS_WITH HIF3A -ARNT REACTS_WITH NCOA1 -ARNT REACTS_WITH SIRT1 -ARNT REACTS_WITH SMAD4 -ARNT REACTS_WITH SP1 -ARPC1B IN_SAME_COMPONENT ACTR3 -ARPC1B IN_SAME_COMPONENT ARPC2 -ARPC1B IN_SAME_COMPONENT ARPC3 -ARPC1B IN_SAME_COMPONENT ARPC5 -ARPC2 IN_SAME_COMPONENT ACTR3 -ARPC2 IN_SAME_COMPONENT ARPC1B -ARPC2 IN_SAME_COMPONENT ARPC3 -ARPC2 IN_SAME_COMPONENT ARPC5 -ARPC3 IN_SAME_COMPONENT ACTR3 -ARPC3 IN_SAME_COMPONENT ARPC1B -ARPC3 IN_SAME_COMPONENT ARPC2 -ARPC3 IN_SAME_COMPONENT ARPC5 -ARPC5 IN_SAME_COMPONENT ACTR3 -ARPC5 IN_SAME_COMPONENT ARPC1B -ARPC5 IN_SAME_COMPONENT ARPC2 -ARPC5 IN_SAME_COMPONENT ARPC3 -ARR3 IN_SAME_COMPONENT RAB11A -ARR3 IN_SAME_COMPONENT TBXA2R -ARR3 REACTS_WITH ARR3 -ARR3 REACTS_WITH RAB11A -ARR3 REACTS_WITH TBXA2R -ARR3 STATE_CHANGE CXCL12 -ARR3 STATE_CHANGE CXCR4 -ARRB1 IN_SAME_COMPONENT F2R -ARRB1 REACTS_WITH ARRB1 -ARRB1 REACTS_WITH F2R -ARRB1 STATE_CHANGE CXCL10 -ARRB1 STATE_CHANGE CXCR3 -ARRB2 CO_CONTROL HDAC1 -ARRB2 CO_CONTROL HDAC2 -ARRB2 CO_CONTROL RAB23 -ARRB2 CO_CONTROL RBBP4 -ARRB2 CO_CONTROL RBBP7 -ARRB2 CO_CONTROL SAP18 -ARRB2 CO_CONTROL SAP30 -ARRB2 CO_CONTROL SIN3A -ARRB2 CO_CONTROL SIN3B -ARRB2 CO_CONTROL STK36 -ARRB2 CO_CONTROL SUFU -ARRB2 CO_CONTROL TGFB1 -ARRB2 IN_SAME_COMPONENT KIRREL -ARRB2 IN_SAME_COMPONENT LHCGR -ARRB2 IN_SAME_COMPONENT NFKB1 -ARRB2 IN_SAME_COMPONENT NFKBIA -ARRB2 IN_SAME_COMPONENT NPHS1 -ARRB2 IN_SAME_COMPONENT RAB11A -ARRB2 IN_SAME_COMPONENT RELA -ARRB2 IN_SAME_COMPONENT SMO -ARRB2 IN_SAME_COMPONENT TBXA2R -ARRB2 IN_SAME_COMPONENT TGFBR3 -ARRB2 METABOLIC_CATALYSIS GLI2 -ARRB2 REACTS_WITH ARRB2 -ARRB2 REACTS_WITH KIRREL -ARRB2 REACTS_WITH LHCGR -ARRB2 REACTS_WITH NFKB1 -ARRB2 REACTS_WITH NFKBIA -ARRB2 REACTS_WITH NPHS1 -ARRB2 REACTS_WITH RAB11A -ARRB2 REACTS_WITH RELA -ARRB2 REACTS_WITH SMO -ARRB2 REACTS_WITH TBXA2R -ARRB2 REACTS_WITH TGFBR3 -ARRB2 STATE_CHANGE CXCL12 -ARRB2 STATE_CHANGE CXCR4 -ARRB2 STATE_CHANGE DVL2 -ARRB2 STATE_CHANGE FZD2 -ARRB2 STATE_CHANGE GLI1 -ARRB2 STATE_CHANGE GLI2 -ARRB2 STATE_CHANGE ROR2 -ARRB2 STATE_CHANGE SUFU -ARRB2 STATE_CHANGE WNT5A -AR REACTS_WITH AR -AR REACTS_WITH CARM1 -AR REACTS_WITH CCND1 -AR REACTS_WITH CCND3 -AR REACTS_WITH CDK6 -AR REACTS_WITH CTNNB1 -AR REACTS_WITH FOXA1 -AR REACTS_WITH HEY1 -AR REACTS_WITH HSP90AA1 -AR REACTS_WITH KAT5 -AR REACTS_WITH NCOA1 -AR REACTS_WITH NCOA2 -AR REACTS_WITH NCOA4 -AR REACTS_WITH NR0B1 -AR REACTS_WITH NR3C1 -AR REACTS_WITH PELP1 -AR REACTS_WITH PIK3CA -AR REACTS_WITH PIK3R1 -AR REACTS_WITH PRDX1 -AR REACTS_WITH SMAD4 -AR REACTS_WITH SNURF -AR REACTS_WITH SRC -AR REACTS_WITH TCF7L2 -AR REACTS_WITH UBE2I -AR STATE_CHANGE GNG2 -AR STATE_CHANGE HDAC7 -AR STATE_CHANGE HRAS -ASAH1 CO_CONTROL PDGFA -ASAP1 CO_CONTROL ARFGAP1 -ASAP1 CO_CONTROL GGA3 -ASAP1 CO_CONTROL KDELR1 -ASAP1 REACTS_WITH ASAP1 -ASAP1 STATE_CHANGE CLTA -ASAP1 STATE_CHANGE CLTB -ASAP1 STATE_CHANGE COPA -ASAP2 IN_SAME_COMPONENT BIN1 -ASIP STATE_CHANGE LNPEP -ASIP STATE_CHANGE SLC2A4 -ASIP STATE_CHANGE VAMP2 -ATF1 METABOLIC_CATALYSIS JUN -ATF2 CO_CONTROL ATF2 -ATF2 CO_CONTROL CUL3 -ATF2 CO_CONTROL EP300 -ATF2 CO_CONTROL FOS -ATF2 CO_CONTROL JDP2 -ATF2 CO_CONTROL JUN -ATF2 IN_SAME_COMPONENT BRCA1 -ATF2 IN_SAME_COMPONENT CREB1 -ATF2 IN_SAME_COMPONENT EP300 -ATF2 IN_SAME_COMPONENT ESR1 -ATF2 IN_SAME_COMPONENT H2AFY -ATF2 IN_SAME_COMPONENT JDP2 -ATF2 IN_SAME_COMPONENT JUN -ATF2 IN_SAME_COMPONENT JUNB -ATF2 IN_SAME_COMPONENT JUND -ATF2 IN_SAME_COMPONENT NF1 -ATF2 IN_SAME_COMPONENT POU2F1 -ATF2 IN_SAME_COMPONENT RUVBL2 -ATF2 IN_SAME_COMPONENT SMAD4 -ATF2 METABOLIC_CATALYSIS ACHE -ATF2 METABOLIC_CATALYSIS ARG1 -ATF2 METABOLIC_CATALYSIS ATF3 -ATF2 METABOLIC_CATALYSIS BCL2 -ATF2 METABOLIC_CATALYSIS CBFB -ATF2 METABOLIC_CATALYSIS CCNA2 -ATF2 METABOLIC_CATALYSIS CCND1 -ATF2 METABOLIC_CATALYSIS CDK4 -ATF2 METABOLIC_CATALYSIS COL24A1 -ATF2 METABOLIC_CATALYSIS CSRP2 -ATF2 METABOLIC_CATALYSIS DDIT3 -ATF2 METABOLIC_CATALYSIS DUSP1 -ATF2 METABOLIC_CATALYSIS DUSP10 -ATF2 METABOLIC_CATALYSIS DUSP5 -ATF2 METABOLIC_CATALYSIS DUSP8 -ATF2 METABOLIC_CATALYSIS ESR1 -ATF2 METABOLIC_CATALYSIS GADD45A -ATF2 METABOLIC_CATALYSIS HES1 -ATF2 METABOLIC_CATALYSIS HRK -ATF2 METABOLIC_CATALYSIS IFNG -ATF2 METABOLIC_CATALYSIS IL23A -ATF2 METABOLIC_CATALYSIS IL6 -ATF2 METABOLIC_CATALYSIS IL8 -ATF2 METABOLIC_CATALYSIS INS -ATF2 METABOLIC_CATALYSIS JUN -ATF2 METABOLIC_CATALYSIS MMP2 -ATF2 METABOLIC_CATALYSIS NOS2 -ATF2 METABOLIC_CATALYSIS PDGFRA -ATF2 METABOLIC_CATALYSIS PLAU -ATF2 METABOLIC_CATALYSIS PPARGC1A -ATF2 METABOLIC_CATALYSIS RB1 -ATF2 METABOLIC_CATALYSIS SELE -ATF2 METABOLIC_CATALYSIS SERPINB5 -ATF2 METABOLIC_CATALYSIS SOCS3 -ATF2 METABOLIC_CATALYSIS TGFB2 -ATF2 METABOLIC_CATALYSIS TH -ATF2 REACTS_WITH ATF2 -ATF2 REACTS_WITH BRCA1 -ATF2 REACTS_WITH CREB1 -ATF2 REACTS_WITH EP300 -ATF2 REACTS_WITH ESR1 -ATF2 REACTS_WITH H2AFY -ATF2 REACTS_WITH JDP2 -ATF2 REACTS_WITH JUN -ATF2 REACTS_WITH JUNB -ATF2 REACTS_WITH JUND -ATF2 REACTS_WITH NF1 -ATF2 REACTS_WITH POU2F1 -ATF2 REACTS_WITH RUVBL2 -ATF2 REACTS_WITH SMAD4 -ATF2 STATE_CHANGE KAT5 -ATF3 IN_SAME_COMPONENT JUN -ATF3 IN_SAME_COMPONENT SMAD4 -ATF3 METABOLIC_CATALYSIS IFNG -ATF3 REACTS_WITH ATF3 -ATF3 REACTS_WITH JUN -ATF4 METABOLIC_CATALYSIS BGLAP -ATF4 REACTS_WITH ATF4 -ATF5 IN_SAME_COMPONENT PTP4A1 -ATF5 REACTS_WITH ATF5 -ATF5 REACTS_WITH PTP4A1 -ATF7 METABOLIC_CATALYSIS TGFB2 -ATG13 IN_SAME_COMPONENT MLST8 -ATG13 IN_SAME_COMPONENT MTOR -ATG13 IN_SAME_COMPONENT RB1CC1 -ATG13 IN_SAME_COMPONENT RPTOR -ATG13 REACTS_WITH ATG13 -ATG13 REACTS_WITH MLST8 -ATG13 REACTS_WITH MTOR -ATG13 REACTS_WITH RB1CC1 -ATG13 REACTS_WITH RPTOR -ATM IN_SAME_COMPONENT BRCA1 -ATM IN_SAME_COMPONENT FAM175A -ATM IN_SAME_COMPONENT H2AFX -ATM IN_SAME_COMPONENT IKBKG -ATM IN_SAME_COMPONENT MDC1 -ATM IN_SAME_COMPONENT MRE11A -ATM IN_SAME_COMPONENT NBN -ATM IN_SAME_COMPONENT RAD50 -ATM IN_SAME_COMPONENT RNF8 -ATM IN_SAME_COMPONENT TERF2 -ATM IN_SAME_COMPONENT TP53BP1 -ATM IN_SAME_COMPONENT UIMC1 -ATM METABOLIC_CATALYSIS SMC3 -ATM REACTS_WITH ATM -ATM REACTS_WITH BRCA1 -ATM REACTS_WITH CTBP1 -ATM REACTS_WITH FAM175A -ATM REACTS_WITH H2AFX -ATM REACTS_WITH IKBKG -ATM REACTS_WITH MDC1 -ATM REACTS_WITH MRE11A -ATM REACTS_WITH NBN -ATM REACTS_WITH RAD50 -ATM REACTS_WITH RBBP8 -ATM REACTS_WITH RNF8 -ATM REACTS_WITH TERF2 -ATM REACTS_WITH TP53BP1 -ATM REACTS_WITH UIMC1 -ATM STATE_CHANGE ABL1 -ATM STATE_CHANGE BARD1 -ATM STATE_CHANGE BID -ATM STATE_CHANGE BLM -ATM STATE_CHANGE BRCA1 -ATM STATE_CHANGE CHEK2 -ATM STATE_CHANGE DCLRE1C -ATM STATE_CHANGE DYRK2 -ATM STATE_CHANGE E2F1 -ATM STATE_CHANGE FANCD2 -ATM STATE_CHANGE H2AFX -ATM STATE_CHANGE MDM2 -ATM STATE_CHANGE MDM4 -ATM STATE_CHANGE MRE11A -ATM STATE_CHANGE NBN -ATM STATE_CHANGE RAD17 -ATM STATE_CHANGE RAD50 -ATM STATE_CHANGE RAD9A -ATM STATE_CHANGE RBBP8 -ATM STATE_CHANGE RFWD2 -ATM STATE_CHANGE SMC1A -ATM STATE_CHANGE TOP3A -ATM STATE_CHANGE TP53 -ATM STATE_CHANGE TRIM28 -ATM STATE_CHANGE TTC5 -ATM STATE_CHANGE XRCC4 -ATP6AP2 IN_SAME_COMPONENT FZD8 -ATP6AP2 IN_SAME_COMPONENT LRP6 -ATP6AP2 IN_SAME_COMPONENT WNT3A -ATP6AP2 REACTS_WITH ATP6AP2 -ATP6AP2 REACTS_WITH FZD8 -ATP6AP2 REACTS_WITH LRP6 -ATP6AP2 REACTS_WITH WNT3A -ATR CO_CONTROL SRC -ATR CO_CONTROL STAT3 -ATR IN_SAME_COMPONENT ATRIP -ATR IN_SAME_COMPONENT CDC6 -ATR IN_SAME_COMPONENT CEP164 -ATR IN_SAME_COMPONENT CHEK1 -ATR IN_SAME_COMPONENT CLSPN -ATR IN_SAME_COMPONENT HUS1 -ATR IN_SAME_COMPONENT RAD1 -ATR IN_SAME_COMPONENT RAD17 -ATR IN_SAME_COMPONENT RAD9A -ATR IN_SAME_COMPONENT RFC2 -ATR IN_SAME_COMPONENT RFC3 -ATR IN_SAME_COMPONENT RFC4 -ATR IN_SAME_COMPONENT RFC5 -ATR IN_SAME_COMPONENT RPA1 -ATR IN_SAME_COMPONENT RPA2 -ATR IN_SAME_COMPONENT SMARCAL1 -ATR IN_SAME_COMPONENT TIMELESS -ATR IN_SAME_COMPONENT TIPIN -ATR IN_SAME_COMPONENT TOPBP1 -ATRIP IN_SAME_COMPONENT ATR -ATRIP IN_SAME_COMPONENT CDC6 -ATRIP IN_SAME_COMPONENT CEP164 -ATRIP IN_SAME_COMPONENT CHEK1 -ATRIP IN_SAME_COMPONENT CLSPN -ATRIP IN_SAME_COMPONENT HUS1 -ATRIP IN_SAME_COMPONENT RAD1 -ATRIP IN_SAME_COMPONENT RAD17 -ATRIP IN_SAME_COMPONENT RAD9A -ATRIP IN_SAME_COMPONENT RFC2 -ATRIP IN_SAME_COMPONENT RFC3 -ATRIP IN_SAME_COMPONENT RFC4 -ATRIP IN_SAME_COMPONENT RFC5 -ATRIP IN_SAME_COMPONENT RPA1 -ATRIP IN_SAME_COMPONENT RPA2 -ATRIP IN_SAME_COMPONENT SMARCAL1 -ATRIP IN_SAME_COMPONENT TIMELESS -ATRIP IN_SAME_COMPONENT TIPIN -ATRIP IN_SAME_COMPONENT TOPBP1 -ATRIP REACTS_WITH ATR -ATRIP REACTS_WITH ATRIP -ATRIP REACTS_WITH CDC6 -ATRIP REACTS_WITH CEP164 -ATRIP REACTS_WITH CHEK1 -ATRIP REACTS_WITH CLSPN -ATRIP REACTS_WITH HUS1 -ATRIP REACTS_WITH RAD1 -ATRIP REACTS_WITH RAD17 -ATRIP REACTS_WITH RAD9A -ATRIP REACTS_WITH RFC2 -ATRIP REACTS_WITH RFC3 -ATRIP REACTS_WITH RFC4 -ATRIP REACTS_WITH RFC5 -ATRIP REACTS_WITH RPA1 -ATRIP REACTS_WITH RPA2 -ATRIP REACTS_WITH SMARCAL1 -ATRIP REACTS_WITH TIMELESS -ATRIP REACTS_WITH TIPIN -ATRIP REACTS_WITH TOPBP1 -ATRIP STATE_CHANGE FANCD2 -ATRIP STATE_CHANGE MCM2 -ATRIP STATE_CHANGE MDM2 -ATRIP STATE_CHANGE NBN -ATR REACTS_WITH ATR -ATR REACTS_WITH ATRIP -ATR REACTS_WITH CDC6 -ATR REACTS_WITH CEP164 -ATR REACTS_WITH CHEK1 -ATR REACTS_WITH CLSPN -ATR REACTS_WITH HUS1 -ATR REACTS_WITH RAD1 -ATR REACTS_WITH RAD17 -ATR REACTS_WITH RAD9A -ATR REACTS_WITH RFC2 -ATR REACTS_WITH RFC3 -ATR REACTS_WITH RFC4 -ATR REACTS_WITH RFC5 -ATR REACTS_WITH RPA1 -ATR REACTS_WITH RPA2 -ATR REACTS_WITH SMARCAL1 -ATR REACTS_WITH TIMELESS -ATR REACTS_WITH TIPIN -ATR REACTS_WITH TOPBP1 -ATR STATE_CHANGE BARD1 -ATR STATE_CHANGE BRCA1 -ATR STATE_CHANGE FANCD2 -ATR STATE_CHANGE MCM2 -ATR STATE_CHANGE MDM2 -ATR STATE_CHANGE NBN -ATR STATE_CHANGE TP53 -AURKA IN_SAME_COMPONENT BIRC5 -AURKA IN_SAME_COMPONENT BORA -AURKA IN_SAME_COMPONENT BRCA1 -AURKA IN_SAME_COMPONENT CKAP5 -AURKA IN_SAME_COMPONENT CPEB1 -AURKA IN_SAME_COMPONENT GADD45A -AURKA IN_SAME_COMPONENT JUB -AURKA IN_SAME_COMPONENT NDEL1 -AURKA IN_SAME_COMPONENT OAZ1 -AURKA IN_SAME_COMPONENT PAK1 -AURKA IN_SAME_COMPONENT PPP2R5D -AURKA IN_SAME_COMPONENT RASA1 -AURKA IN_SAME_COMPONENT TACC1 -AURKA IN_SAME_COMPONENT TACC3 -AURKA IN_SAME_COMPONENT TDRD7 -AURKA IN_SAME_COMPONENT TPX2 -AURKA INTERACTS_WITH DLGAP5 -AURKAIP1 STATE_CHANGE AURKA -AURKAIP1 STATE_CHANGE OAZ1 -AURKA REACTS_WITH ARHGEF7 -AURKA REACTS_WITH AURKA -AURKA REACTS_WITH BIRC5 -AURKA REACTS_WITH BORA -AURKA REACTS_WITH BRCA1 -AURKA REACTS_WITH CKAP5 -AURKA REACTS_WITH CPEB1 -AURKA REACTS_WITH GADD45A -AURKA REACTS_WITH GIT1 -AURKA REACTS_WITH JUB -AURKA REACTS_WITH NDEL1 -AURKA REACTS_WITH OAZ1 -AURKA REACTS_WITH PAK1 -AURKA REACTS_WITH PPP2R5D -AURKA REACTS_WITH RASA1 -AURKA REACTS_WITH TACC1 -AURKA REACTS_WITH TACC3 -AURKA REACTS_WITH TDRD7 -AURKA REACTS_WITH TPX2 -AURKA STATE_CHANGE AKT1 -AURKA STATE_CHANGE CDC25B -AURKA STATE_CHANGE CENPA -AURKA STATE_CHANGE DLGAP5 -AURKA STATE_CHANGE NDEL1 -AURKA STATE_CHANGE NFKBIA -AURKA STATE_CHANGE PLK1 -AURKA STATE_CHANGE TACC3 -AURKA STATE_CHANGE TP53 -AURKB IN_SAME_COMPONENT AURKC -AURKB IN_SAME_COMPONENT BIRC5 -AURKB IN_SAME_COMPONENT CDCA8 -AURKB IN_SAME_COMPONENT CUL3 -AURKB IN_SAME_COMPONENT EVI5 -AURKB IN_SAME_COMPONENT INCENP -AURKB IN_SAME_COMPONENT KLHL13 -AURKB IN_SAME_COMPONENT KLHL9 -AURKB IN_SAME_COMPONENT PPP1CC -AURKB IN_SAME_COMPONENT PPP2R5D -AURKB IN_SAME_COMPONENT PSMA3 -AURKB IN_SAME_COMPONENT RASA1 -AURKB IN_SAME_COMPONENT SEPT1 -AURKB IN_SAME_COMPONENT SGOL1 -AURKB IN_SAME_COMPONENT TACC1 -AURKB INTERACTS_WITH BUB1 -AURKB REACTS_WITH AURKB -AURKB REACTS_WITH AURKC -AURKB REACTS_WITH BIRC5 -AURKB REACTS_WITH CDCA8 -AURKB REACTS_WITH CUL3 -AURKB REACTS_WITH EVI5 -AURKB REACTS_WITH INCENP -AURKB REACTS_WITH KLHL13 -AURKB REACTS_WITH KLHL9 -AURKB REACTS_WITH PPP1CC -AURKB REACTS_WITH PPP2R5D -AURKB REACTS_WITH PSMA3 -AURKB REACTS_WITH RASA1 -AURKB REACTS_WITH SEPT1 -AURKB REACTS_WITH SGOL1 -AURKB REACTS_WITH TACC1 -AURKB STATE_CHANGE CENPA -AURKB STATE_CHANGE DES -AURKB STATE_CHANGE KIF23 -AURKB STATE_CHANGE KIF2C -AURKB STATE_CHANGE MYLK -AURKB STATE_CHANGE NCAPD2 -AURKB STATE_CHANGE NCAPG -AURKB STATE_CHANGE NCAPH -AURKB STATE_CHANGE NCL -AURKB STATE_CHANGE NDC80 -AURKB STATE_CHANGE NSUN2 -AURKB STATE_CHANGE RACGAP1 -AURKB STATE_CHANGE SMC2 -AURKB STATE_CHANGE SMC4 -AURKB STATE_CHANGE STMN1 -AURKB STATE_CHANGE VIM -AURKC IN_SAME_COMPONENT AURKB -AURKC IN_SAME_COMPONENT INCENP -AURKC REACTS_WITH AURKB -AURKC REACTS_WITH AURKC -AURKC REACTS_WITH INCENP -AXIN1 IN_SAME_COMPONENT APC -AXIN1 IN_SAME_COMPONENT CDH2 -AXIN1 IN_SAME_COMPONENT CTNNA1 -AXIN1 IN_SAME_COMPONENT CTNNB1 -AXIN1 IN_SAME_COMPONENT CTNND1 -AXIN1 IN_SAME_COMPONENT FZD5 -AXIN1 IN_SAME_COMPONENT GSK3B -AXIN1 IN_SAME_COMPONENT LRP5 -AXIN1 IN_SAME_COMPONENT LRP6 -AXIN1 IN_SAME_COMPONENT PIN1 -AXIN1 IN_SAME_COMPONENT PPP2CA -AXIN1 IN_SAME_COMPONENT PPP2R5A -AXIN1 IN_SAME_COMPONENT RNF111 -AXIN1 IN_SAME_COMPONENT SMAD7 -AXIN1 IN_SAME_COMPONENT WNT3A -AXIN1 REACTS_WITH APC -AXIN1 REACTS_WITH AXIN1 -AXIN1 REACTS_WITH CDH2 -AXIN1 REACTS_WITH CTNNA1 -AXIN1 REACTS_WITH CTNNB1 -AXIN1 REACTS_WITH CTNND1 -AXIN1 REACTS_WITH FZD5 -AXIN1 REACTS_WITH LRP5 -AXIN1 REACTS_WITH LRP6 -AXIN1 REACTS_WITH RNF111 -AXIN1 REACTS_WITH SMAD7 -AXIN1 REACTS_WITH WNT3A -AXIN1 STATE_CHANGE APC -AXIN1 STATE_CHANGE AXIN1 -AXIN1 STATE_CHANGE CTNNB1 -AXIN1 STATE_CHANGE FZD5 -AXIN1 STATE_CHANGE LRP6 -AXIN1 STATE_CHANGE MAX -AXIN1 STATE_CHANGE MYC -AXIN1 STATE_CHANGE WNT3A -AXIN2 IN_SAME_COMPONENT APC -AXIN2 IN_SAME_COMPONENT CTNNB1 -AXIN2 REACTS_WITH APC -AXIN2 REACTS_WITH AXIN2 -AXIN2 REACTS_WITH CTNNB1 -B2M CO_CONTROL MAPK8 -B2M IN_SAME_COMPONENT CBL -B2M IN_SAME_COMPONENT CD247 -B2M IN_SAME_COMPONENT CD3D -B2M IN_SAME_COMPONENT CD3E -B2M IN_SAME_COMPONENT CD3G -B2M IN_SAME_COMPONENT CD8A -B2M IN_SAME_COMPONENT CD8B -B2M IN_SAME_COMPONENT FYN -B2M IN_SAME_COMPONENT HLA-A -B2M IN_SAME_COMPONENT LCK -B2M IN_SAME_COMPONENT ZAP70 -B2M METABOLIC_CATALYSIS EOMES -B2M METABOLIC_CATALYSIS LAT -B2M METABOLIC_CATALYSIS PRF1 -B2M REACTS_WITH B2M -B2M REACTS_WITH CBL -B2M REACTS_WITH CD247 -B2M REACTS_WITH CD3D -B2M REACTS_WITH CD3E -B2M REACTS_WITH CD3G -B2M REACTS_WITH CD8A -B2M REACTS_WITH CD8B -B2M REACTS_WITH FYN -B2M REACTS_WITH HLA-A -B2M REACTS_WITH LCK -B2M REACTS_WITH ZAP70 -B2M STATE_CHANGE CD28 -B2M STATE_CHANGE CSK -B2M STATE_CHANGE GRAP2 -B2M STATE_CHANGE IL2 -B2M STATE_CHANGE IL2RA -B2M STATE_CHANGE IL2RB -B2M STATE_CHANGE IL2RG -B2M STATE_CHANGE JUN -B2M STATE_CHANGE LCP2 -B2M STATE_CHANGE PAG1 -B2M STATE_CHANGE PRKCQ -B2M STATE_CHANGE PTPN6 -B2M STATE_CHANGE VAV1 -BAD IN_SAME_COMPONENT CALM1 -BAD IN_SAME_COMPONENT PRKCD -BAD IN_SAME_COMPONENT SNCA -BAD IN_SAME_COMPONENT YWHAZ -BAD REACTS_WITH BAD -BAD REACTS_WITH CALM1 -BAD REACTS_WITH PRKCD -BAD REACTS_WITH SNCA -BAD REACTS_WITH YWHAZ -BAD STATE_CHANGE AIFM1 -BAD STATE_CHANGE CASP3 -BAD STATE_CHANGE CYCS -BAG1 IN_SAME_COMPONENT JUN -BAG1 METABOLIC_CATALYSIS BCL2L11 -BAG1 REACTS_WITH BAG1 -BAG1 REACTS_WITH JUN -BAG4 IN_SAME_COMPONENT TNF -BAG4 IN_SAME_COMPONENT TNFRSF1A -BAG4 REACTS_WITH BAG4 -BAG4 REACTS_WITH BIRC3 -BAG4 REACTS_WITH CASP2 -BAG4 REACTS_WITH CRADD -BAG4 REACTS_WITH FADD -BAG4 REACTS_WITH MADD -BAG4 REACTS_WITH MAP3K5 -BAG4 REACTS_WITH RIPK1 -BAG4 REACTS_WITH TNF -BAG4 REACTS_WITH TNFRSF1A -BAG4 REACTS_WITH TRADD -BAG4 REACTS_WITH TRAF1 -BAG4 REACTS_WITH TRAF2 -BAIAP2 CO_CONTROL ABL1 -BAIAP2 CO_CONTROL RAC1 -BAIAP2 IN_SAME_COMPONENT CDC42 -BAIAP2 IN_SAME_COMPONENT ENAH -BAIAP2 IN_SAME_COMPONENT EPS8 -BAIAP2 IN_SAME_COMPONENT WASL -BAIAP2 REACTS_WITH BAIAP2 -BAIAP2 REACTS_WITH CDC42 -BAIAP2 REACTS_WITH ENAH -BAIAP2 REACTS_WITH EPS8 -BAIAP2 REACTS_WITH WASL -BAIAP2 STATE_CHANGE ABI1 -BAIAP2 STATE_CHANGE C3orf10 -BAIAP2 STATE_CHANGE CYFIP2 -BAIAP2 STATE_CHANGE NCKAP1 -BAIAP2 STATE_CHANGE WASF2 -BAK1 IN_SAME_COMPONENT MCL1 -BAK1 IN_SAME_COMPONENT TP53 -BAK1 REACTS_WITH BAK1 -BAK1 REACTS_WITH MCL1 -BAK1 REACTS_WITH TP53 -BAMBI IN_SAME_COMPONENT TGFBR1 -BAMBI REACTS_WITH AHSG -BAMBI REACTS_WITH BAMBI -BAMBI REACTS_WITH BMP6 -BAMBI REACTS_WITH BMP7 -BAMBI REACTS_WITH BMPR2 -BAMBI REACTS_WITH CER1 -BAMBI REACTS_WITH CHRD -BAMBI REACTS_WITH CHRDL1 -BAMBI REACTS_WITH FST -BAMBI REACTS_WITH GREM1 -BAMBI REACTS_WITH NOG -BAMBI REACTS_WITH SOSTDC1 -BAMBI STATE_CHANGE FKBP1A -BAMBI STATE_CHANGE TGFBR1 -BAMBI STATE_CHANGE TGFBR2 -BAMBI STATE_CHANGE TGFBR3 -BARD1 IN_SAME_COMPONENT BRCA1 -BARD1 IN_SAME_COMPONENT CSTF1 -BARD1 IN_SAME_COMPONENT EWSR1 -BARD1 IN_SAME_COMPONENT MRE11A -BARD1 IN_SAME_COMPONENT NBN -BARD1 IN_SAME_COMPONENT PCNA -BARD1 IN_SAME_COMPONENT PRKDC -BARD1 IN_SAME_COMPONENT RAD50 -BARD1 IN_SAME_COMPONENT RAD51 -BARD1 IN_SAME_COMPONENT RBBP8 -BARD1 IN_SAME_COMPONENT TOPBP1 -BARD1 IN_SAME_COMPONENT TP53 -BARD1 IN_SAME_COMPONENT UBE2D3 -BARD1 IN_SAME_COMPONENT UBE2L3 -BARD1 IN_SAME_COMPONENT XRCC5 -BARD1 IN_SAME_COMPONENT XRCC6 -BARD1 INTERACTS_WITH BARD1 -BARD1 INTERACTS_WITH BRCA1 -BARD1 REACTS_WITH BARD1 -BARD1 REACTS_WITH BRCA1 -BARD1 REACTS_WITH CSTF1 -BARD1 REACTS_WITH EWSR1 -BARD1 REACTS_WITH MRE11A -BARD1 REACTS_WITH NBN -BARD1 REACTS_WITH PCNA -BARD1 REACTS_WITH PRKDC -BARD1 REACTS_WITH RAD50 -BARD1 REACTS_WITH RAD51 -BARD1 REACTS_WITH RBBP8 -BARD1 REACTS_WITH TOPBP1 -BARD1 REACTS_WITH TP53 -BARD1 REACTS_WITH UBE2D3 -BARD1 REACTS_WITH UBE2L3 -BARD1 REACTS_WITH XRCC5 -BARD1 REACTS_WITH XRCC6 -BARD1 STATE_CHANGE FANCA -BARD1 STATE_CHANGE FANCC -BARD1 STATE_CHANGE FANCD2 -BARD1 STATE_CHANGE FANCE -BARD1 STATE_CHANGE FANCF -BARD1 STATE_CHANGE FANCG -BARD1 STATE_CHANGE FANCL -BATF3 CO_CONTROL FOS -BATF3 CO_CONTROL JUN -BATF3 IN_SAME_COMPONENT JUN -BATF3 METABOLIC_CATALYSIS IL2 -BATF3 REACTS_WITH BATF3 -BATF3 REACTS_WITH FOS -BATF3 REACTS_WITH JUN -BAX CO_CONTROL GSN -BAX IN_SAME_COMPONENT BCL2 -BAX IN_SAME_COMPONENT BID -BAX IN_SAME_COMPONENT SIRT1 -BAX IN_SAME_COMPONENT XRCC6 -BAX INTERACTS_WITH CASP3 -BAX REACTS_WITH BAX -BAX REACTS_WITH BCL2 -BAX REACTS_WITH BID -BAX REACTS_WITH SIRT1 -BAX REACTS_WITH XRCC6 -BAX STATE_CHANGE AIFM1 -BAX STATE_CHANGE CYCS -BBC3 REACTS_WITH BBC3 -BBC3 REACTS_WITH TP53 -BCAR1 CO_CONTROL RHOA -BCAR1 IN_SAME_COMPONENT CBL -BCAR1 IN_SAME_COMPONENT CRK -BCAR1 IN_SAME_COMPONENT CSF1R -BCAR1 IN_SAME_COMPONENT DCC -BCAR1 IN_SAME_COMPONENT DOCK1 -BCAR1 IN_SAME_COMPONENT ELMO1 -BCAR1 IN_SAME_COMPONENT ESR1 -BCAR1 IN_SAME_COMPONENT FYN -BCAR1 IN_SAME_COMPONENT ITGAV -BCAR1 IN_SAME_COMPONENT ITGB3 -BCAR1 IN_SAME_COMPONENT NTN1 -BCAR1 IN_SAME_COMPONENT PELP1 -BCAR1 IN_SAME_COMPONENT PTK2 -BCAR1 IN_SAME_COMPONENT PTK2B -BCAR1 IN_SAME_COMPONENT PTPN1 -BCAR1 IN_SAME_COMPONENT PXN -BCAR1 IN_SAME_COMPONENT SRC -BCAR1 IN_SAME_COMPONENT TRIP6 -BCAR1 REACTS_WITH BCAR1 -BCAR1 REACTS_WITH CBL -BCAR1 REACTS_WITH CRK -BCAR1 REACTS_WITH CSF1R -BCAR1 REACTS_WITH DCC -BCAR1 REACTS_WITH DOCK1 -BCAR1 REACTS_WITH ELMO1 -BCAR1 REACTS_WITH ESR1 -BCAR1 REACTS_WITH FYN -BCAR1 REACTS_WITH ITGAV -BCAR1 REACTS_WITH ITGB3 -BCAR1 REACTS_WITH NTN1 -BCAR1 REACTS_WITH PELP1 -BCAR1 REACTS_WITH PTK2 -BCAR1 REACTS_WITH PTK2B -BCAR1 REACTS_WITH PTPN1 -BCAR1 REACTS_WITH PXN -BCAR1 REACTS_WITH SRC -BCAR1 REACTS_WITH TRIP6 -BCAR1 STATE_CHANGE BCAR1 -BCAR1 STATE_CHANGE CRK -BCAR1 STATE_CHANGE MAP2K4 -BCAR1 STATE_CHANGE MAPK8 -BCAR1 STATE_CHANGE RAC1 -BCAR1 STATE_CHANGE RAP1B -BCAR1 STATE_CHANGE RAPGEF1 -BCAR1 STATE_CHANGE VAV3 -BCAR3 STATE_CHANGE CDC42 -BCL10 CO_CONTROL AKT1 -BCL10 CO_CONTROL GAB2 -BCL10 CO_CONTROL TRAF6 -BCL10 IN_SAME_COMPONENT CARD11 -BCL10 IN_SAME_COMPONENT MALT1 -BCL10 IN_SAME_COMPONENT MAP3K7 -BCL10 IN_SAME_COMPONENT PDPK1 -BCL10 IN_SAME_COMPONENT TRAF6 -BCL10 REACTS_WITH BCL10 -BCL10 REACTS_WITH CARD11 -BCL10 REACTS_WITH MALT1 -BCL10 REACTS_WITH MAP3K7 -BCL10 REACTS_WITH PDPK1 -BCL10 REACTS_WITH TRAF6 -BCL10 STATE_CHANGE CHUK -BCL10 STATE_CHANGE IKBKB -BCL10 STATE_CHANGE IKBKG -BCL2A1 REACTS_WITH POU2F2 -BCL2 CO_CONTROL CASP3 -BCL2 IN_SAME_COMPONENT BAX -BCL2 IN_SAME_COMPONENT FKBP8 -BCL2 IN_SAME_COMPONENT NR4A1 -BCL2L11 STATE_CHANGE CASP3 -BCL2 REACTS_WITH BAX -BCL2 REACTS_WITH BCL2 -BCL2 REACTS_WITH CALM1 -BCL2 REACTS_WITH FKBP8 -BCL2 REACTS_WITH NR4A1 -BCL2 STATE_CHANGE AIFM1 -BCL2 STATE_CHANGE CYCS -BCL3 IN_SAME_COMPONENT NFKB1 -BCL3 IN_SAME_COMPONENT RELA -BCL3 REACTS_WITH BCL3 -BCL3 REACTS_WITH NFKB1 -BCL3 REACTS_WITH RELA -BCL6 CO_CONTROL CEBPB -BCL6 CO_CONTROL EGR2 -BCL6 CO_CONTROL FES -BCL6 CO_CONTROL HMGA1 -BCL6 CO_CONTROL IL2RG -BCL6 CO_CONTROL IL4 -BCL6 CO_CONTROL IL4R -BCL6 CO_CONTROL IRF4 -BCL6 CO_CONTROL IRS2 -BCL6 CO_CONTROL JAK1 -BCL6 CO_CONTROL JAK3 -BCL6 CO_CONTROL PARP14 -BCL6 CO_CONTROL STAT6 -BCL6 IN_SAME_COMPONENT BCOR -BCL6 IN_SAME_COMPONENT HDAC5 -BCL6 IN_SAME_COMPONENT IRF4 -BCL6 METABOLIC_CATALYSIS FCER2 -BCL6 METABOLIC_CATALYSIS IGHE -BCL6 REACTS_WITH BCL6 -BCL6 REACTS_WITH BCOR -BCL6 REACTS_WITH HDAC5 -BCL9 IN_SAME_COMPONENT CTNNB1 -BCL9 METABOLIC_CATALYSIS CDX1 -BCL9 REACTS_WITH BCL9 -BCL9 REACTS_WITH CTNNB1 -BCOR IN_SAME_COMPONENT BCL6 -BCOR IN_SAME_COMPONENT HDAC5 -BCOR REACTS_WITH BCL6 -BCOR REACTS_WITH BCOR -BCOR REACTS_WITH HDAC5 -BDNF IN_SAME_COMPONENT GIPC1 -BDNF IN_SAME_COMPONENT NGFR -BDNF IN_SAME_COMPONENT NTRK2 -BDNF IN_SAME_COMPONENT SORT1 -BDNF IN_SAME_COMPONENT TRAF6 -BDNF IN_SAME_COMPONENT ZNF274 -BDNF REACTS_WITH BDNF -BDNF REACTS_WITH GIPC1 -BDNF REACTS_WITH NGFR -BDNF REACTS_WITH NTRK2 -BDNF REACTS_WITH SORT1 -BDNF REACTS_WITH TRAF6 -BDNF REACTS_WITH ZNF274 -BDNF STATE_CHANGE CASP6 -BDNF STATE_CHANGE CDC42 -BDNF STATE_CHANGE CDH2 -BDNF STATE_CHANGE CTNNA1 -BDNF STATE_CHANGE CTNNB1 -BDNF STATE_CHANGE CTNND1 -BDNF STATE_CHANGE TP53 -BEX1 IN_SAME_COMPONENT NGF -BEX1 IN_SAME_COMPONENT NGFR -BEX1 REACTS_WITH BEX1 -BEX1 REACTS_WITH NGF -BEX1 REACTS_WITH NGFR -BEX1 REACTS_WITH RIPK2 -BEX1 REACTS_WITH TRAF6 -BGN IN_SAME_COMPONENT LY96 -BGN IN_SAME_COMPONENT MYD88 -BGN IN_SAME_COMPONENT TIRAP -BGN IN_SAME_COMPONENT TLR1 -BGN IN_SAME_COMPONENT TLR2 -BGN IN_SAME_COMPONENT TLR4 -BGN REACTS_WITH BGN -BGN REACTS_WITH LY96 -BGN REACTS_WITH MYD88 -BGN REACTS_WITH TIRAP -BGN REACTS_WITH TLR1 -BGN REACTS_WITH TLR2 -BGN REACTS_WITH TLR4 -BHLHE40 REACTS_WITH ARNTL -BHLHE40 REACTS_WITH DEC1 -BID CO_CONTROL GSN -BID IN_SAME_COMPONENT BAX -BID REACTS_WITH BAX -BID REACTS_WITH BID -BID STATE_CHANGE CYCS -BIN1 IN_SAME_COMPONENT ASAP2 -BIRC2 IN_SAME_COMPONENT BIRC3 -BIRC2 IN_SAME_COMPONENT CD40 -BIRC2 IN_SAME_COMPONENT CD40LG -BIRC2 IN_SAME_COMPONENT RIPK1 -BIRC2 IN_SAME_COMPONENT TNF -BIRC2 IN_SAME_COMPONENT TNFRSF1A -BIRC2 IN_SAME_COMPONENT TNFRSF1B -BIRC2 IN_SAME_COMPONENT TRADD -BIRC2 IN_SAME_COMPONENT TRAF1 -BIRC2 IN_SAME_COMPONENT TRAF2 -BIRC2 IN_SAME_COMPONENT TRAF3 -BIRC2 IN_SAME_COMPONENT UBE2D3 -BIRC2 REACTS_WITH BIRC2 -BIRC2 REACTS_WITH BIRC3 -BIRC2 REACTS_WITH CD40 -BIRC2 REACTS_WITH CD40LG -BIRC2 REACTS_WITH RIPK1 -BIRC2 REACTS_WITH TNF -BIRC2 REACTS_WITH TNFRSF1A -BIRC2 REACTS_WITH TNFRSF1B -BIRC2 REACTS_WITH TRADD -BIRC2 REACTS_WITH TRAF1 -BIRC2 REACTS_WITH TRAF2 -BIRC2 REACTS_WITH TRAF3 -BIRC2 STATE_CHANGE CASP8 -BIRC2 STATE_CHANGE IKBKG -BIRC2 STATE_CHANGE MAP3K14 -BIRC2 STATE_CHANGE TRAF3 -BIRC3 CO_CONTROL CTSD -BIRC3 CO_CONTROL NSMAF -BIRC3 CO_CONTROL TNF -BIRC3 CO_CONTROL TNFRSF1A -BIRC3 IN_SAME_COMPONENT BIRC2 -BIRC3 IN_SAME_COMPONENT CASP2 -BIRC3 IN_SAME_COMPONENT CD40 -BIRC3 IN_SAME_COMPONENT CD40LG -BIRC3 IN_SAME_COMPONENT CRADD -BIRC3 IN_SAME_COMPONENT FADD -BIRC3 IN_SAME_COMPONENT LRDD -BIRC3 IN_SAME_COMPONENT MADD -BIRC3 IN_SAME_COMPONENT MAP3K5 -BIRC3 IN_SAME_COMPONENT RIPK1 -BIRC3 IN_SAME_COMPONENT TNF -BIRC3 IN_SAME_COMPONENT TNFRSF1A -BIRC3 IN_SAME_COMPONENT TNFRSF1B -BIRC3 IN_SAME_COMPONENT TRADD -BIRC3 IN_SAME_COMPONENT TRAF1 -BIRC3 IN_SAME_COMPONENT TRAF2 -BIRC3 IN_SAME_COMPONENT TRAF3 -BIRC3 REACTS_WITH BAG4 -BIRC3 REACTS_WITH BIRC2 -BIRC3 REACTS_WITH BIRC3 -BIRC3 REACTS_WITH CASP2 -BIRC3 REACTS_WITH CD40 -BIRC3 REACTS_WITH CD40LG -BIRC3 REACTS_WITH CRADD -BIRC3 REACTS_WITH FADD -BIRC3 REACTS_WITH MADD -BIRC3 REACTS_WITH MAP3K5 -BIRC3 REACTS_WITH RIPK1 -BIRC3 REACTS_WITH TNF -BIRC3 REACTS_WITH TNFRSF1A -BIRC3 REACTS_WITH TNFRSF1B -BIRC3 REACTS_WITH TRADD -BIRC3 REACTS_WITH TRAF1 -BIRC3 REACTS_WITH TRAF2 -BIRC3 REACTS_WITH TRAF3 -BIRC3 STATE_CHANGE BID -BIRC3 STATE_CHANGE CASP2 -BIRC3 STATE_CHANGE CASP3 -BIRC3 STATE_CHANGE CASP7 -BIRC3 STATE_CHANGE CASP8 -BIRC3 STATE_CHANGE FADD -BIRC3 STATE_CHANGE MAP2K7 -BIRC3 STATE_CHANGE MAP3K14 -BIRC3 STATE_CHANGE MAP4K4 -BIRC3 STATE_CHANGE SMPD1 -BIRC3 STATE_CHANGE SMPD3 -BIRC3 STATE_CHANGE TRAF3 -BIRC5 IN_SAME_COMPONENT AURKA -BIRC5 IN_SAME_COMPONENT AURKB -BIRC5 IN_SAME_COMPONENT CDCA8 -BIRC5 IN_SAME_COMPONENT CUL3 -BIRC5 IN_SAME_COMPONENT EVI5 -BIRC5 IN_SAME_COMPONENT INCENP -BIRC5 IN_SAME_COMPONENT KLHL13 -BIRC5 IN_SAME_COMPONENT KLHL9 -BIRC5 IN_SAME_COMPONENT RASA1 -BIRC5 IN_SAME_COMPONENT SGOL1 -BIRC5 REACTS_WITH AURKA -BIRC5 REACTS_WITH AURKB -BIRC5 REACTS_WITH BIRC5 -BIRC5 REACTS_WITH CDCA8 -BIRC5 REACTS_WITH CUL3 -BIRC5 REACTS_WITH EVI5 -BIRC5 REACTS_WITH INCENP -BIRC5 REACTS_WITH KLHL13 -BIRC5 REACTS_WITH KLHL9 -BIRC5 REACTS_WITH PSMA3 -BIRC5 REACTS_WITH RASA1 -BIRC5 REACTS_WITH SGOL1 -BIRC5 STATE_CHANGE CENPA -BIRC5 STATE_CHANGE KIF23 -BIRC5 STATE_CHANGE KIF2C -BIRC5 STATE_CHANGE RACGAP1 -BLM IN_SAME_COMPONENT TERF2 -BLM IN_SAME_COMPONENT TOP3A -BLM REACTS_WITH BLM -BLM REACTS_WITH TERF2 -BLM REACTS_WITH TOP3A -BLNK CO_CONTROL CD19 -BLNK CO_CONTROL INPP5D -BLNK IN_SAME_COMPONENT BTK -BLNK IN_SAME_COMPONENT CD72 -BLNK IN_SAME_COMPONENT CD79A -BLNK IN_SAME_COMPONENT CD79B -BLNK IN_SAME_COMPONENT LYN -BLNK IN_SAME_COMPONENT PLCG2 -BLNK IN_SAME_COMPONENT SYK -BLNK REACTS_WITH BLNK -BLNK REACTS_WITH BTK -BLNK REACTS_WITH CD72 -BLNK REACTS_WITH CD79A -BLNK REACTS_WITH CD79B -BLNK REACTS_WITH LYN -BLNK REACTS_WITH PLCG2 -BLNK REACTS_WITH PTPN6 -BLNK REACTS_WITH SYK -BLNK STATE_CHANGE VAV2 -BMP4 CO_CONTROL GPC3 -BMP6 IN_SAME_COMPONENT AHSG -BMP6 IN_SAME_COMPONENT BMPR2 -BMP6 REACTS_WITH AHSG -BMP6 REACTS_WITH BAMBI -BMP6 REACTS_WITH BMP6 -BMP6 REACTS_WITH BMPR2 -BMP6 STATE_CHANGE SMAD1 -BMP6 STATE_CHANGE SMAD5 -BMP7 IN_SAME_COMPONENT ACVR1 -BMP7 IN_SAME_COMPONENT BMPR2 -BMP7 IN_SAME_COMPONENT FST -BMP7 IN_SAME_COMPONENT SMAD6 -BMP7 IN_SAME_COMPONENT SMURF1 -BMP7 IN_SAME_COMPONENT SOSTDC1 -BMP7 REACTS_WITH ACVR1 -BMP7 REACTS_WITH BAMBI -BMP7 REACTS_WITH BMP7 -BMP7 REACTS_WITH BMPR2 -BMP7 REACTS_WITH FKBP1A -BMP7 REACTS_WITH FST -BMP7 REACTS_WITH SMAD1 -BMP7 REACTS_WITH SMAD6 -BMP7 REACTS_WITH SMURF1 -BMP7 REACTS_WITH SOSTDC1 -BMPR2 CO_CONTROL ACVRL1 -BMPR2 CO_CONTROL GDF2 -BMPR2 CO_CONTROL MAP3K7 -BMPR2 CO_CONTROL SMAD6 -BMPR2 IN_SAME_COMPONENT ACVR1 -BMPR2 IN_SAME_COMPONENT ACVRL1 -BMPR2 IN_SAME_COMPONENT BMP6 -BMPR2 IN_SAME_COMPONENT BMP7 -BMPR2 IN_SAME_COMPONENT CSNK2B -BMPR2 IN_SAME_COMPONENT FST -BMPR2 IN_SAME_COMPONENT GDF2 -BMPR2 IN_SAME_COMPONENT PPP1CA -BMPR2 IN_SAME_COMPONENT PPP1R15A -BMPR2 IN_SAME_COMPONENT SMAD6 -BMPR2 IN_SAME_COMPONENT SMAD7 -BMPR2 IN_SAME_COMPONENT SMURF1 -BMPR2 IN_SAME_COMPONENT XIAP -BMPR2 IN_SAME_COMPONENT ZFYVE16 -BMPR2 REACTS_WITH ACVR1 -BMPR2 REACTS_WITH ACVRL1 -BMPR2 REACTS_WITH AHSG -BMPR2 REACTS_WITH BAMBI -BMPR2 REACTS_WITH BMP6 -BMPR2 REACTS_WITH BMP7 -BMPR2 REACTS_WITH BMPR2 -BMPR2 REACTS_WITH CER1 -BMPR2 REACTS_WITH CHRD -BMPR2 REACTS_WITH CHRDL1 -BMPR2 REACTS_WITH CSNK2B -BMPR2 REACTS_WITH FKBP1A -BMPR2 REACTS_WITH FST -BMPR2 REACTS_WITH GDF2 -BMPR2 REACTS_WITH GREM1 -BMPR2 REACTS_WITH NOG -BMPR2 REACTS_WITH PPP1CA -BMPR2 REACTS_WITH PPP1R15A -BMPR2 REACTS_WITH SMAD1 -BMPR2 REACTS_WITH SMAD6 -BMPR2 REACTS_WITH SMAD7 -BMPR2 REACTS_WITH SMURF1 -BMPR2 REACTS_WITH SOSTDC1 -BMPR2 REACTS_WITH XIAP -BMPR2 REACTS_WITH ZFYVE16 -BMPR2 STATE_CHANGE MAP3K7 -BMPR2 STATE_CHANGE SMAD1 -BMPR2 STATE_CHANGE SMAD5 -BMPR2 STATE_CHANGE SMAD9 -BNIP3 IN_SAME_COMPONENT RHEB -BNIP3 REACTS_WITH BNIP3 -BNIP3 REACTS_WITH RHEB -BOC IN_SAME_COMPONENT SHH -BOC REACTS_WITH BOC -BOC REACTS_WITH SHH -BORA IN_SAME_COMPONENT AURKA -BORA REACTS_WITH AURKA -BORA REACTS_WITH BORA -BORA STATE_CHANGE PLK1 -BRCA1 CO_CONTROL AR -BRCA1 CO_CONTROL FOXA1 -BRCA1 CO_CONTROL MAX -BRCA1 CO_CONTROL MYC -BRCA1 CO_CONTROL TBP -BRCA1 IN_SAME_COMPONENT ATF2 -BRCA1 IN_SAME_COMPONENT ATM -BRCA1 IN_SAME_COMPONENT AURKA -BRCA1 IN_SAME_COMPONENT BARD1 -BRCA1 IN_SAME_COMPONENT CSTF1 -BRCA1 IN_SAME_COMPONENT CTBP1 -BRCA1 IN_SAME_COMPONENT FAM175A -BRCA1 IN_SAME_COMPONENT H2AFX -BRCA1 IN_SAME_COMPONENT MDC1 -BRCA1 IN_SAME_COMPONENT MRE11A -BRCA1 IN_SAME_COMPONENT NBN -BRCA1 IN_SAME_COMPONENT NF1 -BRCA1 IN_SAME_COMPONENT PCNA -BRCA1 IN_SAME_COMPONENT POU2F1 -BRCA1 IN_SAME_COMPONENT RAD50 -BRCA1 IN_SAME_COMPONENT RAD51 -BRCA1 IN_SAME_COMPONENT RBBP8 -BRCA1 IN_SAME_COMPONENT RNF8 -BRCA1 IN_SAME_COMPONENT TOPBP1 -BRCA1 IN_SAME_COMPONENT TP53 -BRCA1 IN_SAME_COMPONENT TP53BP1 -BRCA1 IN_SAME_COMPONENT UBE2D3 -BRCA1 IN_SAME_COMPONENT UBE2L3 -BRCA1 IN_SAME_COMPONENT UIMC1 -BRCA1 INTERACTS_WITH BARD1 -BRCA1 INTERACTS_WITH BRCA1 -BRCA1 METABOLIC_CATALYSIS CDKN1B -BRCA1 METABOLIC_CATALYSIS GADD45A -BRCA1 METABOLIC_CATALYSIS KLK3 -BRCA1 METABOLIC_CATALYSIS S100A7 -BRCA1 METABOLIC_CATALYSIS SMC3 -BRCA1 REACTS_WITH ATF2 -BRCA1 REACTS_WITH ATM -BRCA1 REACTS_WITH AURKA -BRCA1 REACTS_WITH BARD1 -BRCA1 REACTS_WITH BRCA1 -BRCA1 REACTS_WITH CSTF1 -BRCA1 REACTS_WITH CTBP1 -BRCA1 REACTS_WITH FAM175A -BRCA1 REACTS_WITH H2AFX -BRCA1 REACTS_WITH MDC1 -BRCA1 REACTS_WITH MRE11A -BRCA1 REACTS_WITH NBN -BRCA1 REACTS_WITH NF1 -BRCA1 REACTS_WITH PCNA -BRCA1 REACTS_WITH POU2F1 -BRCA1 REACTS_WITH RAD50 -BRCA1 REACTS_WITH RAD51 -BRCA1 REACTS_WITH RBBP8 -BRCA1 REACTS_WITH RNF8 -BRCA1 REACTS_WITH TOPBP1 -BRCA1 REACTS_WITH TP53 -BRCA1 REACTS_WITH TP53BP1 -BRCA1 REACTS_WITH UBE2D3 -BRCA1 REACTS_WITH UBE2L3 -BRCA1 REACTS_WITH UIMC1 -BRCA1 STATE_CHANGE CHEK2 -BRCA1 STATE_CHANGE FANCA -BRCA1 STATE_CHANGE FANCC -BRCA1 STATE_CHANGE FANCD2 -BRCA1 STATE_CHANGE FANCE -BRCA1 STATE_CHANGE FANCF -BRCA1 STATE_CHANGE FANCG -BRCA1 STATE_CHANGE FANCL -BRCA1 STATE_CHANGE SMC1A -BRCA2 IN_SAME_COMPONENT RAD51 -BRCA2 REACTS_WITH BRCA2 -BRCA2 REACTS_WITH RAD51 -BRSK1 STATE_CHANGE MAP2 -BRSK2 STATE_CHANGE MAP2 -BSG IN_SAME_COMPONENT SDC1 -BSG REACTS_WITH BSG -BSG REACTS_WITH SDC1 -BTC IN_SAME_COMPONENT EGFR -BTC IN_SAME_COMPONENT ERBB2 -BTC REACTS_WITH BTC -BTC REACTS_WITH EGFR -BTC REACTS_WITH ERBB2 -BTK CO_CONTROL INPP5D -BTK IN_SAME_COMPONENT BLNK -BTK IN_SAME_COMPONENT CD72 -BTK IN_SAME_COMPONENT CD79A -BTK IN_SAME_COMPONENT CD79B -BTK IN_SAME_COMPONENT FAS -BTK IN_SAME_COMPONENT FASLG -BTK IN_SAME_COMPONENT LYN -BTK IN_SAME_COMPONENT PLCG2 -BTK IN_SAME_COMPONENT SYK -BTK REACTS_WITH BLNK -BTK REACTS_WITH BTK -BTK REACTS_WITH CD72 -BTK REACTS_WITH CD79A -BTK REACTS_WITH CD79B -BTK REACTS_WITH FADD -BTK REACTS_WITH FAS -BTK REACTS_WITH FASLG -BTK REACTS_WITH LYN -BTK REACTS_WITH PLCG2 -BTK REACTS_WITH PTPN6 -BTK REACTS_WITH SYK -BTK STATE_CHANGE HRAS -BTK STATE_CHANGE MAPK8 -BTK STATE_CHANGE PLCG1 -BTRC IN_SAME_COMPONENT CTNNB1 -BTRC IN_SAME_COMPONENT CUL1 -BTRC IN_SAME_COMPONENT FBXW7 -BTRC IN_SAME_COMPONENT SKP1 -BTRC IN_SAME_COMPONENT TCF7L2 -BTRC IN_SAME_COMPONENT TRRAP -BTRC METABOLIC_CATALYSIS GLI2 -BTRC REACTS_WITH BTRC -BTRC REACTS_WITH CTNNB1 -BTRC REACTS_WITH CUL1 -BTRC REACTS_WITH SKP1 -BTRC REACTS_WITH TCF7L2 -BTRC REACTS_WITH TRRAP -BTRC STATE_CHANGE APC -BTRC STATE_CHANGE CTNNB1 -BTRC STATE_CHANGE HDAC3 -BTRC STATE_CHANGE NFKB1 -BTRC STATE_CHANGE NFKB2 -BTRC STATE_CHANGE NFKBIA -BTRC STATE_CHANGE RELA -BTRC STATE_CHANGE RELB -BUB1 IN_SAME_COMPONENT BUB3 -BUB1 INTERACTS_WITH AURKB -BUB1 REACTS_WITH BUB1 -BUB1 REACTS_WITH BUB3 -BUB1 STATE_CHANGE AURKB -BUB1 STATE_CHANGE BIRC5 -BUB1 STATE_CHANGE CDCA8 -BUB1 STATE_CHANGE INCENP -BUB1 STATE_CHANGE PLK1 -BUB1 STATE_CHANGE PPP2CA -BUB1 STATE_CHANGE PPP2R1A -BUB3 IN_SAME_COMPONENT BUB1 -BUB3 REACTS_WITH BUB1 -BUB3 REACTS_WITH BUB3 -C3 IN_SAME_COMPONENT ITGAM -C3 IN_SAME_COMPONENT ITGAX -C3 IN_SAME_COMPONENT ITGB2 -C3orf10 IN_SAME_COMPONENT ABI1 -C3orf10 IN_SAME_COMPONENT ABI2 -C3orf10 IN_SAME_COMPONENT CYFIP2 -C3orf10 IN_SAME_COMPONENT NCKAP1 -C3orf10 IN_SAME_COMPONENT WASF1 -C3orf10 IN_SAME_COMPONENT WASF2 -C3orf10 REACTS_WITH ABI1 -C3orf10 REACTS_WITH C3orf10 -C3orf10 REACTS_WITH CYFIP2 -C3orf10 REACTS_WITH NCKAP1 -C3orf10 REACTS_WITH WASF2 -C3 REACTS_WITH C3 -C3 REACTS_WITH ITGAM -C3 REACTS_WITH ITGAX -C3 REACTS_WITH ITGB2 -C4BPA IN_SAME_COMPONENT CD40 -C4BPA REACTS_WITH C4BPA -C4BPA REACTS_WITH CD40 -C4BPA STATE_CHANGE NFKB1 -C4BPA STATE_CHANGE NFKBIA -C4BPA STATE_CHANGE RELA -CAB39 IN_SAME_COMPONENT STK11 -CAB39 REACTS_WITH CAB39 -CAB39 REACTS_WITH STK11 -CAB39 STATE_CHANGE BRSK1 -CAB39 STATE_CHANGE BRSK2 -CAB39 STATE_CHANGE MARK2 -CAB39 STATE_CHANGE MARK4 -CAB39 STATE_CHANGE MST4 -CAB39 STATE_CHANGE SIK1 -CAB39 STATE_CHANGE SIK2 -CAB39 STATE_CHANGE SIK3 -CABIN1 IN_SAME_COMPONENT CALM1 -CABIN1 IN_SAME_COMPONENT CAMK4 -CABIN1 IN_SAME_COMPONENT MEF2D -CABIN1 IN_SAME_COMPONENT YWHAQ -CABIN1 REACTS_WITH CABIN1 -CABIN1 REACTS_WITH CALM1 -CABIN1 REACTS_WITH CAMK4 -CABIN1 REACTS_WITH MEF2D -CABIN1 REACTS_WITH NFATC2 -CABIN1 REACTS_WITH YWHAQ -CABLES1 IN_SAME_COMPONENT ABL1 -CABLES1 IN_SAME_COMPONENT ROBO1 -CABLES1 IN_SAME_COMPONENT SLIT1 -CABLES1 STATE_CHANGE CDH2 -CABLES1 STATE_CHANGE CTNNA1 -CABLES1 STATE_CHANGE CTNNB1 -CABLES1 STATE_CHANGE CTNND1 -CALM1 CO_CONTROL PRKCZ -CALM1 CO_CONTROL RHOQ -CALM1 CO_CONTROL STX4 -CALM1 CO_CONTROL STXBP4 -CALM1 CO_CONTROL TRIP10 -CALM1 CO_CONTROL VAMP2 -CALM1 IN_SAME_COMPONENT BAD -CALM1 IN_SAME_COMPONENT CABIN1 -CALM1 IN_SAME_COMPONENT CAMK2B -CALM1 IN_SAME_COMPONENT CAMK4 -CALM1 IN_SAME_COMPONENT FKBP8 -CALM1 IN_SAME_COMPONENT GAP43 -CALM1 IN_SAME_COMPONENT IQGAP1 -CALM1 IN_SAME_COMPONENT MAP3K5 -CALM1 IN_SAME_COMPONENT MEF2D -CALM1 IN_SAME_COMPONENT SLC9A1 -CALM1 IN_SAME_COMPONENT YWHAQ -CALM1 METABOLIC_CATALYSIS CBLB -CALM1 METABOLIC_CATALYSIS ITCH -CALM1 METABOLIC_CATALYSIS RNF128 -CALM1 REACTS_WITH BAD -CALM1 REACTS_WITH BCL2 -CALM1 REACTS_WITH CABIN1 -CALM1 REACTS_WITH CALM1 -CALM1 REACTS_WITH CAMK2B -CALM1 REACTS_WITH CAMK4 -CALM1 REACTS_WITH CHP -CALM1 REACTS_WITH FKBP8 -CALM1 REACTS_WITH GAP43 -CALM1 REACTS_WITH IQGAP1 -CALM1 REACTS_WITH MAP3K5 -CALM1 REACTS_WITH MAPK8 -CALM1 REACTS_WITH MAPK9 -CALM1 REACTS_WITH MEF2D -CALM1 REACTS_WITH NFATC1 -CALM1 REACTS_WITH NFATC3 -CALM1 REACTS_WITH PAFAH1B1 -CALM1 REACTS_WITH SLC9A1 -CALM1 REACTS_WITH TBC1D4 -CALM1 REACTS_WITH YWHAQ -CALM1 STATE_CHANGE CAMK2G -CALM1 STATE_CHANGE CAMKK2 -CALM1 STATE_CHANGE CAV1 -CALM1 STATE_CHANGE CSNK1A1 -CALM1 STATE_CHANGE HSP90AA1 -CALM1 STATE_CHANGE LNPEP -CALM1 STATE_CHANGE MAP2K3 -CALM1 STATE_CHANGE MAP2K6 -CALM1 STATE_CHANGE NFATC1 -CALM1 STATE_CHANGE NFATC2 -CALM1 STATE_CHANGE NFATC3 -CALM1 STATE_CHANGE NOS3 -CALM1 STATE_CHANGE SLC2A4 -CALM1 STATE_CHANGE SMAD2 -CALM1 STATE_CHANGE STAT1 -CALM1 STATE_CHANGE VAMP2 -CAMK2A CO_CONTROL TGFBR1 -CAMK2A CO_CONTROL TGFBR2 -CAMK2A STATE_CHANGE MAP3K7 -CAMK2A STATE_CHANGE SMAD2 -CAMK2B IN_SAME_COMPONENT CALM1 -CAMK2B IN_SAME_COMPONENT MAP3K5 -CAMK2B REACTS_WITH CALM1 -CAMK2B REACTS_WITH CAMK2B -CAMK2B REACTS_WITH MAP3K5 -CAMK2B STATE_CHANGE MAP2K3 -CAMK2B STATE_CHANGE MAP2K6 -CAMK2D STATE_CHANGE HES1 -CAMK2D STATE_CHANGE PARP1 -CAMK2D STATE_CHANGE TLE1 -CAMK2G STATE_CHANGE ETS1 -CAMK4 IN_SAME_COMPONENT CABIN1 -CAMK4 IN_SAME_COMPONENT CALM1 -CAMK4 IN_SAME_COMPONENT MEF2D -CAMK4 IN_SAME_COMPONENT YWHAQ -CAMK4 REACTS_WITH CABIN1 -CAMK4 REACTS_WITH CALM1 -CAMK4 REACTS_WITH CAMK4 -CAMK4 REACTS_WITH MEF2D -CAMK4 REACTS_WITH YWHAQ -CAMK4 STATE_CHANGE HDAC4 -CAMK4 STATE_CHANGE SRF -CAPN2 IN_SAME_COMPONENT MAPK1 -CAPN2 REACTS_WITH CAPN2 -CAPN2 REACTS_WITH MAPK1 -CARD11 CO_CONTROL AKT1 -CARD11 CO_CONTROL GAB2 -CARD11 CO_CONTROL TRAF6 -CARD11 IN_SAME_COMPONENT BCL10 -CARD11 IN_SAME_COMPONENT MALT1 -CARD11 IN_SAME_COMPONENT MAP3K7 -CARD11 IN_SAME_COMPONENT PDPK1 -CARD11 IN_SAME_COMPONENT TRAF6 -CARD11 REACTS_WITH BCL10 -CARD11 REACTS_WITH CARD11 -CARD11 REACTS_WITH MALT1 -CARD11 REACTS_WITH MAP3K7 -CARD11 REACTS_WITH PDPK1 -CARD11 REACTS_WITH TRAF6 -CARD11 STATE_CHANGE CHUK -CARD11 STATE_CHANGE IKBKB -CARD11 STATE_CHANGE IKBKG -CARM1 CO_CONTROL AR -CARM1 CO_CONTROL CCND3 -CARM1 CO_CONTROL CEBPA -CARM1 CO_CONTROL EHMT2 -CARM1 CO_CONTROL SRC -CARM1 CO_CONTROL TADA2B -CARM1 CO_CONTROL TAF9 -CARM1 IN_SAME_COMPONENT AR -CARM1 IN_SAME_COMPONENT NCOA2 -CARM1 IN_SAME_COMPONENT PRMT1 -CARM1 IN_SAME_COMPONENT TP53 -CARM1 METABOLIC_CATALYSIS GADD45A -CARM1 METABOLIC_CATALYSIS KLK2 -CARM1 METABOLIC_CATALYSIS KLK3 -CARM1 REACTS_WITH AR -CARM1 REACTS_WITH CARM1 -CARM1 REACTS_WITH NCOA2 -CARM1 REACTS_WITH PRMT1 -CARM1 REACTS_WITH TP53 -CASK IN_SAME_COMPONENT EPB41 -CASK IN_SAME_COMPONENT SDC1 -CASK IN_SAME_COMPONENT SDC2 -CASK IN_SAME_COMPONENT SDC3 -CASK REACTS_WITH CASK -CASK REACTS_WITH EPB41 -CASK REACTS_WITH SDC1 -CASK REACTS_WITH SDC2 -CASK REACTS_WITH SDC3 -CASP10 IN_SAME_COMPONENT FADD -CASP10 IN_SAME_COMPONENT FAS -CASP10 IN_SAME_COMPONENT FASLG -CASP10 REACTS_WITH CASP10 -CASP10 REACTS_WITH CFLAR -CASP10 REACTS_WITH FADD -CASP10 REACTS_WITH FAS -CASP10 REACTS_WITH FASLG -CASP10 STATE_CHANGE CASP3 -CASP10 STATE_CHANGE CYCS -CASP1 METABOLIC_CATALYSIS IL1B -CASP1 REACTS_WITH CASP1 -CASP1 STATE_CHANGE CASP3 -CASP1 STATE_CHANGE IL18 -CASP1 STATE_CHANGE IL1B -CASP2 IN_SAME_COMPONENT BIRC3 -CASP2 IN_SAME_COMPONENT CRADD -CASP2 IN_SAME_COMPONENT FADD -CASP2 IN_SAME_COMPONENT MAP3K5 -CASP2 IN_SAME_COMPONENT RIPK1 -CASP2 IN_SAME_COMPONENT TNF -CASP2 IN_SAME_COMPONENT TNFRSF1A -CASP2 IN_SAME_COMPONENT TRADD -CASP2 IN_SAME_COMPONENT TRAF1 -CASP2 IN_SAME_COMPONENT TRAF2 -CASP2 REACTS_WITH BAG4 -CASP2 REACTS_WITH BIRC3 -CASP2 REACTS_WITH CASP2 -CASP2 REACTS_WITH CRADD -CASP2 REACTS_WITH FADD -CASP2 REACTS_WITH MAP3K5 -CASP2 REACTS_WITH RIPK1 -CASP2 REACTS_WITH TNF -CASP2 REACTS_WITH TNFRSF1A -CASP2 REACTS_WITH TRADD -CASP2 REACTS_WITH TRAF1 -CASP2 REACTS_WITH TRAF2 -CASP2 STATE_CHANGE CASP3 -CASP2 STATE_CHANGE CASP6 -CASP2 STATE_CHANGE CASP7 -CASP2 STATE_CHANGE MAP2K7 -CASP2 STATE_CHANGE MAP3K14 -CASP3 CO_CONTROL BCL2 -CASP3 INTERACTS_WITH BAX -CASP3 METABOLIC_CATALYSIS GAS2 -CASP3 METABOLIC_CATALYSIS GSN -CASP3 METABOLIC_CATALYSIS NFATC2 -CASP3 METABOLIC_CATALYSIS PARP1 -CASP3 METABOLIC_CATALYSIS SREBF1 -CASP3 REACTS_WITH CASP3 -CASP3 STATE_CHANGE CASP6 -CASP3 STATE_CHANGE DFFA -CASP3 STATE_CHANGE DFFB -CASP3 STATE_CHANGE LIMK1 -CASP3 STATE_CHANGE SLK -CASP4 STATE_CHANGE CASP1 -CASP6 CO_CONTROL TNF -CASP6 METABOLIC_CATALYSIS TFAP2A -CASP6 REACTS_WITH CASP6 -CASP7 METABOLIC_CATALYSIS PARP1 -CASP7 REACTS_WITH CASP7 -CASP8 CO_CONTROL AR -CASP8 IN_SAME_COMPONENT AR -CASP8 IN_SAME_COMPONENT CFLAR -CASP8 IN_SAME_COMPONENT DAXX -CASP8 IN_SAME_COMPONENT FADD -CASP8 IN_SAME_COMPONENT FAS -CASP8 IN_SAME_COMPONENT FASLG -CASP8 IN_SAME_COMPONENT MAP3K5 -CASP8 METABOLIC_CATALYSIS KLK3 -CASP8 METABOLIC_CATALYSIS RIPK1 -CASP8 REACTS_WITH CASP8 -CASP8 REACTS_WITH CFLAR -CASP8 REACTS_WITH DAXX -CASP8 REACTS_WITH FADD -CASP8 REACTS_WITH FAS -CASP8 REACTS_WITH FASLG -CASP8 REACTS_WITH ITGAV -CASP8 REACTS_WITH ITGB3 -CASP8 REACTS_WITH MAP3K5 -CASP8 STATE_CHANGE BID -CASP8 STATE_CHANGE CASP3 -CASP8 STATE_CHANGE CASP6 -CASP8 STATE_CHANGE CASP7 -CASP8 STATE_CHANGE CASP8 -CASP8 STATE_CHANGE FADD -CASP8 STATE_CHANGE FAS -CASP8 STATE_CHANGE FASLG -CASP8 STATE_CHANGE MAP2K7 -CASP9 IN_SAME_COMPONENT APAF1 -CASP9 STATE_CHANGE CASP3 -CASP9 STATE_CHANGE CASP6 -CASP9 STATE_CHANGE CASP7 -CASR STATE_CHANGE FYN -CAV1 CO_CONTROL ACVRL1 -CAV1 CO_CONTROL PPP1CA -CAV1 CO_CONTROL TGFB1 -CAV1 CO_CONTROL TGFBR1 -CAV1 CO_CONTROL TGFBR2 -CAV1 IN_SAME_COMPONENT ACVRL1 -CAV1 IN_SAME_COMPONENT NOS3 -CAV1 IN_SAME_COMPONENT PDGFRA -CAV1 IN_SAME_COMPONENT SMAD7 -CAV1 IN_SAME_COMPONENT TGFB1 -CAV1 IN_SAME_COMPONENT TGFBR1 -CAV1 IN_SAME_COMPONENT TGFBR2 -CAV1 REACTS_WITH ACVRL1 -CAV1 REACTS_WITH CAV1 -CAV1 REACTS_WITH HSP90AA1 -CAV1 REACTS_WITH NOS3 -CAV1 REACTS_WITH PDGFRA -CAV1 REACTS_WITH SMAD7 -CAV1 REACTS_WITH TGFB1 -CAV1 REACTS_WITH TGFBR1 -CAV1 REACTS_WITH TGFBR2 -CAV1 REACTS_WITH ZFYVE9 -CAV1 STATE_CHANGE FZD5 -CAV1 STATE_CHANGE LRP6 -CAV1 STATE_CHANGE RIPK1 -CAV1 STATE_CHANGE TNF -CAV1 STATE_CHANGE TNFRSF1A -CAV1 STATE_CHANGE TRADD -CAV1 STATE_CHANGE TRAF2 -CAV1 STATE_CHANGE WNT3A -CAV2 IN_SAME_COMPONENT HRAS -CAV2 IN_SAME_COMPONENT SDC2 -CAV2 REACTS_WITH CAV2 -CAV2 REACTS_WITH HRAS -CAV2 REACTS_WITH SDC2 -CAV3 IN_SAME_COMPONENT PDGFRA -CAV3 REACTS_WITH CAV3 -CAV3 REACTS_WITH PDGFRA -CBFA2T3 REACTS_WITH CBFA2T3 -CBFB CO_CONTROL CREB1 -CBFB IN_SAME_COMPONENT SMAD4 -CBFB METABOLIC_CATALYSIS IGHA1 -CBFB REACTS_WITH CBFB -CBFB REACTS_WITH SMAD4 -CBLB IN_SAME_COMPONENT CD40 -CBLB IN_SAME_COMPONENT CD40LG -CBLB IN_SAME_COMPONENT TRAF2 -CBLB IN_SAME_COMPONENT TRAF6 -CBLB REACTS_WITH CBLB -CBLB REACTS_WITH CD40 -CBLB REACTS_WITH CD40LG -CBLB REACTS_WITH TRAF2 -CBLB REACTS_WITH TRAF6 -CBLB STATE_CHANGE AKT1 -CBLB STATE_CHANGE EGF -CBLB STATE_CHANGE EGFR -CBL IN_SAME_COMPONENT ARHGEF7 -CBL IN_SAME_COMPONENT B2M -CBL IN_SAME_COMPONENT BCAR1 -CBL IN_SAME_COMPONENT CD247 -CBL IN_SAME_COMPONENT CD2AP -CBL IN_SAME_COMPONENT CD3D -CBL IN_SAME_COMPONENT CD3E -CBL IN_SAME_COMPONENT CD3G -CBL IN_SAME_COMPONENT CD4 -CBL IN_SAME_COMPONENT CD8A -CBL IN_SAME_COMPONENT CD8B -CBL IN_SAME_COMPONENT CDC42 -CBL IN_SAME_COMPONENT CRKL -CBL IN_SAME_COMPONENT CSF1R -CBL IN_SAME_COMPONENT EGF -CBL IN_SAME_COMPONENT EGFR -CBL IN_SAME_COMPONENT FLT1 -CBL IN_SAME_COMPONENT FRS2 -CBL IN_SAME_COMPONENT GNG2 -CBL IN_SAME_COMPONENT HLA-A -CBL IN_SAME_COMPONENT HLA-DRA -CBL IN_SAME_COMPONENT HLA-DRB1 -CBL IN_SAME_COMPONENT ITGAV -CBL IN_SAME_COMPONENT ITGB3 -CBL IN_SAME_COMPONENT KDR -CBL IN_SAME_COMPONENT LCK -CBL IN_SAME_COMPONENT PDGFB -CBL IN_SAME_COMPONENT PDGFRB -CBL IN_SAME_COMPONENT PIK3CG -CBL IN_SAME_COMPONENT PIK3R6 -CBL IN_SAME_COMPONENT RAPGEF1 -CBL IN_SAME_COMPONENT SDC2 -CBL IN_SAME_COMPONENT SH2B2 -CBL IN_SAME_COMPONENT SH3GL2 -CBL IN_SAME_COMPONENT SH3KBP1 -CBL IN_SAME_COMPONENT SHC1 -CBL IN_SAME_COMPONENT SLA2 -CBL IN_SAME_COMPONENT SORBS1 -CBL IN_SAME_COMPONENT SOS1 -CBL IN_SAME_COMPONENT SPRY2 -CBL IN_SAME_COMPONENT VAV1 -CBL IN_SAME_COMPONENT VEGFA -CBL IN_SAME_COMPONENT ZAP70 -CBL INTERACTS_WITH KIT -CBL INTERACTS_WITH KITLG -CBLL1 STATE_CHANGE CDH1 -CBLL1 STATE_CHANGE CTNNB1 -CBL REACTS_WITH ARHGEF7 -CBL REACTS_WITH B2M -CBL REACTS_WITH BCAR1 -CBL REACTS_WITH CBL -CBL REACTS_WITH CD247 -CBL REACTS_WITH CD2AP -CBL REACTS_WITH CD3D -CBL REACTS_WITH CD3E -CBL REACTS_WITH CD3G -CBL REACTS_WITH CD4 -CBL REACTS_WITH CD8A -CBL REACTS_WITH CD8B -CBL REACTS_WITH CDC42 -CBL REACTS_WITH CRKL -CBL REACTS_WITH CSF1R -CBL REACTS_WITH EGF -CBL REACTS_WITH EGFR -CBL REACTS_WITH FLT1 -CBL REACTS_WITH FRS2 -CBL REACTS_WITH GNG2 -CBL REACTS_WITH GRAP2 -CBL REACTS_WITH HLA-A -CBL REACTS_WITH HLA-DRA -CBL REACTS_WITH HLA-DRB1 -CBL REACTS_WITH ITGAV -CBL REACTS_WITH ITGB3 -CBL REACTS_WITH ITK -CBL REACTS_WITH KDR -CBL REACTS_WITH LCK -CBL REACTS_WITH LCP2 -CBL REACTS_WITH PDGFB -CBL REACTS_WITH PDGFRB -CBL REACTS_WITH PIK3CG -CBL REACTS_WITH PIK3R6 -CBL REACTS_WITH PLCG1 -CBL REACTS_WITH RAPGEF1 -CBL REACTS_WITH SDC2 -CBL REACTS_WITH SH2B2 -CBL REACTS_WITH SHC1 -CBL REACTS_WITH SLA2 -CBL REACTS_WITH SORBS1 -CBL REACTS_WITH SOS1 -CBL REACTS_WITH SPRY2 -CBL REACTS_WITH VAV1 -CBL REACTS_WITH VEGFA -CBL REACTS_WITH ZAP70 -CBL STATE_CHANGE ARHGEF7 -CBL STATE_CHANGE EGF -CBL STATE_CHANGE EGFR -CBL STATE_CHANGE HGF -CBL STATE_CHANGE MET -CBL STATE_CHANGE PIK3CA -CBL STATE_CHANGE PIK3R1 -CBL STATE_CHANGE PLCG1 -CBL STATE_CHANGE RHOQ -CBL STATE_CHANGE SH3GL2 -CBL STATE_CHANGE SH3KBP1 -CBL STATE_CHANGE VAV3 -CBX4 IN_SAME_COMPONENT CTBP1 -CBX4 IN_SAME_COMPONENT E2F4 -CBX4 IN_SAME_COMPONENT RB1 -CBX4 IN_SAME_COMPONENT TFDP1 -CBX4 REACTS_WITH CBX4 -CBX4 REACTS_WITH CTBP1 -CBX4 REACTS_WITH E2F4 -CBX4 REACTS_WITH RB1 -CBX4 REACTS_WITH TFDP1 -CBY1 IN_SAME_COMPONENT CTNNB1 -CBY1 REACTS_WITH CBY1 -CBY1 REACTS_WITH CTNNB1 -CCL11 IN_SAME_COMPONENT CXCR3 -CCL11 REACTS_WITH CCL11 -CCL11 REACTS_WITH CXCL10 -CCL11 REACTS_WITH CXCR3 -CCL11 REACTS_WITH GNAI2 -CCL11 REACTS_WITH GNG2 -CCL5 IN_SAME_COMPONENT SDC1 -CCL5 IN_SAME_COMPONENT SDC4 -CCL5 REACTS_WITH CCL5 -CCL5 REACTS_WITH SDC1 -CCL5 REACTS_WITH SDC4 -CCM2 IN_SAME_COMPONENT MAP2K3 -CCM2 IN_SAME_COMPONENT MAP3K3 -CCM2 IN_SAME_COMPONENT RAC1 -CCM2 REACTS_WITH CCM2 -CCM2 REACTS_WITH MAP2K3 -CCM2 REACTS_WITH MAP3K3 -CCM2 REACTS_WITH RAC1 -CCNA2 CO_CONTROL MAPK14 -CCNA2 IN_SAME_COMPONENT CDK2 -CCNA2 INTERACTS_WITH CCNE1 -CCNA2 INTERACTS_WITH CDK2 -CCNA2 STATE_CHANGE ABL1 -CCNA2 STATE_CHANGE ATR -CCNA2 STATE_CHANGE ATRIP -CCNA2 STATE_CHANGE MDM2 -CCNA2 STATE_CHANGE RB1 -CCNA2 STATE_CHANGE TFDP1 -CCNA2 STATE_CHANGE TP53 -CCNB1 CO_CONTROL INCENP -CCNB1 CO_CONTROL PLK1 -CCNB1 IN_SAME_COMPONENT CDK1 -CCNB1 REACTS_WITH CCNB1 -CCNB1 REACTS_WITH CDK1 -CCNB1 STATE_CHANGE BUB1 -CCNB1 STATE_CHANGE BUB1B -CCNB1 STATE_CHANGE ERCC6L -CCNB1 STATE_CHANGE FBXO5 -CCNB1 STATE_CHANGE GOLGA2 -CCNB1 STATE_CHANGE GORASP1 -CCNB1 STATE_CHANGE RAB1A -CCNB1 STATE_CHANGE WEE1 -CCND1 CO_CONTROL AR -CCND1 CO_CONTROL CDK6 -CCND1 IN_SAME_COMPONENT AR -CCND1 IN_SAME_COMPONENT CDK4 -CCND1 IN_SAME_COMPONENT CDK6 -CCND1 IN_SAME_COMPONENT MYB -CCND1 METABOLIC_CATALYSIS KLK3 -CCND1 REACTS_WITH AR -CCND1 REACTS_WITH CCND1 -CCND1 REACTS_WITH CDK6 -CCND1 REACTS_WITH MYB -CCND1 STATE_CHANGE RB1 -CCND3 CO_CONTROL AR -CCND3 CO_CONTROL CARM1 -CCND3 CO_CONTROL NCOA2 -CCND3 IN_SAME_COMPONENT AR -CCND3 METABOLIC_CATALYSIS KLK3 -CCND3 REACTS_WITH AR -CCND3 REACTS_WITH CCND3 -CCNE1 CO_CONTROL MLST8 -CCNE1 CO_CONTROL MTOR -CCNE1 CO_CONTROL RPTOR -CCNE1 IN_SAME_COMPONENT CDK2 -CCNE1 INTERACTS_WITH CCNA2 -CCNE1 STATE_CHANGE BARD1 -CCNE1 STATE_CHANGE BRCA1 -CCNE1 STATE_CHANGE E2F5 -CCNE1 STATE_CHANGE RB1 -CCNE1 STATE_CHANGE RRN3 -CCNE1 STATE_CHANGE TFDP1 -CCNG1 IN_SAME_COMPONENT PPP2CA -CCNG1 IN_SAME_COMPONENT PPP2R4 -CCNG1 REACTS_WITH CCNG1 -CCNG1 REACTS_WITH PPP2CA -CCNG1 REACTS_WITH PPP2R4 -CCNG1 STATE_CHANGE MDM2 -CCNH IN_SAME_COMPONENT CDK7 -CCNH IN_SAME_COMPONENT MNAT1 -CCNH IN_SAME_COMPONENT RARA -CCNH IN_SAME_COMPONENT RXRA -CCNH REACTS_WITH CCNH -CCNH REACTS_WITH RARA -CCNH REACTS_WITH RXRA -CCNH STATE_CHANGE CCNH -CCNH STATE_CHANGE RARA -CD14 IN_SAME_COMPONENT ITGA4 -CD14 IN_SAME_COMPONENT ITGB1 -CD14 METABOLIC_CATALYSIS TLR6 -CD14 REACTS_WITH CD14 -CD14 REACTS_WITH ITGA4 -CD14 REACTS_WITH ITGB1 -CD14 STATE_CHANGE BGN -CD14 STATE_CHANGE HSPD1 -CD14 STATE_CHANGE LY96 -CD14 STATE_CHANGE TLR1 -CD14 STATE_CHANGE TLR2 -CD14 STATE_CHANGE TLR4 -CD14 STATE_CHANGE VCAN -CD19 CO_CONTROL BLNK -CD19 CO_CONTROL CD79A -CD19 CO_CONTROL CD79B -CD19 CO_CONTROL LYN -CD19 CO_CONTROL SYK -CD19 IN_SAME_COMPONENT PIK3CA -CD19 IN_SAME_COMPONENT PIK3R1 -CD19 REACTS_WITH CD19 -CD19 REACTS_WITH PIK3CA -CD19 REACTS_WITH PIK3R1 -CD19 STATE_CHANGE AKT1 -CD19 STATE_CHANGE VAV2 -CD22 STATE_CHANGE PTPN6 -CD247 CO_CONTROL CD28 -CD247 CO_CONTROL FYN -CD247 CO_CONTROL ITK -CD247 CO_CONTROL MAPK8 -CD247 CO_CONTROL PTPN11 -CD247 CO_CONTROL STAT4 -CD247 CO_CONTROL TBX21 -CD247 IN_SAME_COMPONENT B2M -CD247 IN_SAME_COMPONENT CBL -CD247 IN_SAME_COMPONENT CD3D -CD247 IN_SAME_COMPONENT CD3E -CD247 IN_SAME_COMPONENT CD3G -CD247 IN_SAME_COMPONENT CD4 -CD247 IN_SAME_COMPONENT CD8A -CD247 IN_SAME_COMPONENT CD8B -CD247 IN_SAME_COMPONENT FYN -CD247 IN_SAME_COMPONENT HLA-A -CD247 IN_SAME_COMPONENT HLA-DRA -CD247 IN_SAME_COMPONENT HLA-DRB1 -CD247 IN_SAME_COMPONENT LCK -CD247 IN_SAME_COMPONENT SH3BP2 -CD247 IN_SAME_COMPONENT SLA2 -CD247 IN_SAME_COMPONENT ZAP70 -CD247 METABOLIC_CATALYSIS EOMES -CD247 METABOLIC_CATALYSIS FASLG -CD247 METABOLIC_CATALYSIS FOS -CD247 METABOLIC_CATALYSIS IFNG -CD247 METABOLIC_CATALYSIS LAT -CD247 METABOLIC_CATALYSIS PRF1 -CD247 REACTS_WITH B2M -CD247 REACTS_WITH CBL -CD247 REACTS_WITH CD247 -CD247 REACTS_WITH CD3D -CD247 REACTS_WITH CD3E -CD247 REACTS_WITH CD3G -CD247 REACTS_WITH CD4 -CD247 REACTS_WITH CD8A -CD247 REACTS_WITH CD8B -CD247 REACTS_WITH FYN -CD247 REACTS_WITH HLA-A -CD247 REACTS_WITH HLA-DRA -CD247 REACTS_WITH HLA-DRB1 -CD247 REACTS_WITH LCK -CD247 REACTS_WITH SH3BP2 -CD247 REACTS_WITH SLA2 -CD247 REACTS_WITH ZAP70 -CD247 STATE_CHANGE CBL -CD247 STATE_CHANGE CD28 -CD247 STATE_CHANGE CSK -CD247 STATE_CHANGE DBNL -CD247 STATE_CHANGE FYB -CD247 STATE_CHANGE GRAP2 -CD247 STATE_CHANGE IL2 -CD247 STATE_CHANGE IL2RA -CD247 STATE_CHANGE IL2RB -CD247 STATE_CHANGE IL2RG -CD247 STATE_CHANGE ITK -CD247 STATE_CHANGE JUN -CD247 STATE_CHANGE LCP2 -CD247 STATE_CHANGE MAP4K1 -CD247 STATE_CHANGE PAG1 -CD247 STATE_CHANGE PRKCQ -CD247 STATE_CHANGE PTPN11 -CD247 STATE_CHANGE PTPN6 -CD247 STATE_CHANGE SHC1 -CD247 STATE_CHANGE VAV1 -CD28 CO_CONTROL CD247 -CD28 CO_CONTROL CD3D -CD28 CO_CONTROL CD3E -CD28 CO_CONTROL CD3G -CD28 CO_CONTROL CD4 -CD28 CO_CONTROL HLA-DRA -CD28 CO_CONTROL HLA-DRB1 -CD28 CO_CONTROL LCK -CD28 CO_CONTROL STAT4 -CD28 CO_CONTROL TBX21 -CD28 METABOLIC_CATALYSIS IFNG -CD28 METABOLIC_CATALYSIS PRF1 -CD28 REACTS_WITH CD28 -CD28 STATE_CHANGE B2M -CD28 STATE_CHANGE CD247 -CD28 STATE_CHANGE CD3D -CD28 STATE_CHANGE CD3E -CD28 STATE_CHANGE CD3G -CD28 STATE_CHANGE CD4 -CD28 STATE_CHANGE CD8A -CD28 STATE_CHANGE CD8B -CD28 STATE_CHANGE GAB2 -CD28 STATE_CHANGE HLA-A -CD28 STATE_CHANGE HLA-DRA -CD28 STATE_CHANGE HLA-DRB1 -CD28 STATE_CHANGE ITK -CD28 STATE_CHANGE LCK -CD28 STATE_CHANGE PRKCQ -CD28 STATE_CHANGE STK39 -CD28 STATE_CHANGE ZAP70 -CD2AP IN_SAME_COMPONENT CBL -CD2AP IN_SAME_COMPONENT FLT1 -CD2AP IN_SAME_COMPONENT KIRREL -CD2AP IN_SAME_COMPONENT NPHS1 -CD2AP IN_SAME_COMPONENT NPHS2 -CD2AP IN_SAME_COMPONENT VEGFA -CD2AP REACTS_WITH CBL -CD2AP REACTS_WITH CD2AP -CD2AP REACTS_WITH FLT1 -CD2AP REACTS_WITH KIRREL -CD2AP REACTS_WITH NPHS1 -CD2AP REACTS_WITH NPHS2 -CD2AP REACTS_WITH VEGFA -CD3D CO_CONTROL CD28 -CD3D CO_CONTROL FYN -CD3D CO_CONTROL ITK -CD3D CO_CONTROL MAPK8 -CD3D CO_CONTROL PTPN11 -CD3D CO_CONTROL STAT4 -CD3D CO_CONTROL TBX21 -CD3D IN_SAME_COMPONENT B2M -CD3D IN_SAME_COMPONENT CBL -CD3D IN_SAME_COMPONENT CD247 -CD3D IN_SAME_COMPONENT CD3E -CD3D IN_SAME_COMPONENT CD3G -CD3D IN_SAME_COMPONENT CD4 -CD3D IN_SAME_COMPONENT CD8A -CD3D IN_SAME_COMPONENT CD8B -CD3D IN_SAME_COMPONENT FYN -CD3D IN_SAME_COMPONENT HLA-A -CD3D IN_SAME_COMPONENT HLA-DRA -CD3D IN_SAME_COMPONENT HLA-DRB1 -CD3D IN_SAME_COMPONENT LCK -CD3D IN_SAME_COMPONENT SH3BP2 -CD3D IN_SAME_COMPONENT SLA2 -CD3D IN_SAME_COMPONENT ZAP70 -CD3D METABOLIC_CATALYSIS EOMES -CD3D METABOLIC_CATALYSIS FOS -CD3D METABOLIC_CATALYSIS IFNG -CD3D METABOLIC_CATALYSIS LAT -CD3D METABOLIC_CATALYSIS PRF1 -CD3D REACTS_WITH B2M -CD3D REACTS_WITH CBL -CD3D REACTS_WITH CD247 -CD3D REACTS_WITH CD3D -CD3D REACTS_WITH CD3E -CD3D REACTS_WITH CD3G -CD3D REACTS_WITH CD4 -CD3D REACTS_WITH CD8A -CD3D REACTS_WITH CD8B -CD3D REACTS_WITH FYN -CD3D REACTS_WITH HLA-A -CD3D REACTS_WITH HLA-DRA -CD3D REACTS_WITH HLA-DRB1 -CD3D REACTS_WITH LCK -CD3D REACTS_WITH SH3BP2 -CD3D REACTS_WITH SLA2 -CD3D REACTS_WITH ZAP70 -CD3D STATE_CHANGE CBL -CD3D STATE_CHANGE CD28 -CD3D STATE_CHANGE CSK -CD3D STATE_CHANGE DBNL -CD3D STATE_CHANGE FYB -CD3D STATE_CHANGE GRAP2 -CD3D STATE_CHANGE IL2 -CD3D STATE_CHANGE IL2RA -CD3D STATE_CHANGE IL2RB -CD3D STATE_CHANGE IL2RG -CD3D STATE_CHANGE ITK -CD3D STATE_CHANGE JUN -CD3D STATE_CHANGE LCP2 -CD3D STATE_CHANGE MAP4K1 -CD3D STATE_CHANGE PAG1 -CD3D STATE_CHANGE PRKCQ -CD3D STATE_CHANGE PTPN11 -CD3D STATE_CHANGE PTPN6 -CD3D STATE_CHANGE SHC1 -CD3D STATE_CHANGE VAV1 -CD3E CO_CONTROL CD28 -CD3E CO_CONTROL FYN -CD3E CO_CONTROL ITK -CD3E CO_CONTROL MAPK8 -CD3E CO_CONTROL PTPN11 -CD3E CO_CONTROL STAT4 -CD3E CO_CONTROL TBX21 -CD3E IN_SAME_COMPONENT B2M -CD3E IN_SAME_COMPONENT CBL -CD3E IN_SAME_COMPONENT CD247 -CD3E IN_SAME_COMPONENT CD3D -CD3E IN_SAME_COMPONENT CD3G -CD3E IN_SAME_COMPONENT CD4 -CD3E IN_SAME_COMPONENT CD8A -CD3E IN_SAME_COMPONENT CD8B -CD3E IN_SAME_COMPONENT FYN -CD3E IN_SAME_COMPONENT HLA-A -CD3E IN_SAME_COMPONENT HLA-DRA -CD3E IN_SAME_COMPONENT HLA-DRB1 -CD3E IN_SAME_COMPONENT LCK -CD3E IN_SAME_COMPONENT SH3BP2 -CD3E IN_SAME_COMPONENT SLA2 -CD3E IN_SAME_COMPONENT ZAP70 -CD3E METABOLIC_CATALYSIS EOMES -CD3E METABOLIC_CATALYSIS FOS -CD3E METABOLIC_CATALYSIS IFNG -CD3E METABOLIC_CATALYSIS LAT -CD3E METABOLIC_CATALYSIS PRF1 -CD3E REACTS_WITH B2M -CD3E REACTS_WITH CBL -CD3E REACTS_WITH CD247 -CD3E REACTS_WITH CD3D -CD3E REACTS_WITH CD3E -CD3E REACTS_WITH CD3G -CD3E REACTS_WITH CD4 -CD3E REACTS_WITH CD8A -CD3E REACTS_WITH CD8B -CD3E REACTS_WITH FYN -CD3E REACTS_WITH HLA-A -CD3E REACTS_WITH HLA-DRA -CD3E REACTS_WITH HLA-DRB1 -CD3E REACTS_WITH LCK -CD3E REACTS_WITH SH3BP2 -CD3E REACTS_WITH SLA2 -CD3E REACTS_WITH ZAP70 -CD3E STATE_CHANGE CBL -CD3E STATE_CHANGE CD28 -CD3E STATE_CHANGE CSK -CD3E STATE_CHANGE DBNL -CD3E STATE_CHANGE FYB -CD3E STATE_CHANGE GRAP2 -CD3E STATE_CHANGE IL2 -CD3E STATE_CHANGE IL2RA -CD3E STATE_CHANGE IL2RB -CD3E STATE_CHANGE IL2RG -CD3E STATE_CHANGE ITK -CD3E STATE_CHANGE JUN -CD3E STATE_CHANGE LCP2 -CD3E STATE_CHANGE MAP4K1 -CD3E STATE_CHANGE PAG1 -CD3E STATE_CHANGE PRKCQ -CD3E STATE_CHANGE PTPN11 -CD3E STATE_CHANGE PTPN6 -CD3E STATE_CHANGE SHC1 -CD3E STATE_CHANGE VAV1 -CD3G CO_CONTROL CD28 -CD3G CO_CONTROL FYN -CD3G CO_CONTROL ITK -CD3G CO_CONTROL MAPK8 -CD3G CO_CONTROL PTPN11 -CD3G CO_CONTROL STAT4 -CD3G CO_CONTROL TBX21 -CD3G IN_SAME_COMPONENT B2M -CD3G IN_SAME_COMPONENT CBL -CD3G IN_SAME_COMPONENT CD247 -CD3G IN_SAME_COMPONENT CD3D -CD3G IN_SAME_COMPONENT CD3E -CD3G IN_SAME_COMPONENT CD4 -CD3G IN_SAME_COMPONENT CD8A -CD3G IN_SAME_COMPONENT CD8B -CD3G IN_SAME_COMPONENT FYN -CD3G IN_SAME_COMPONENT HLA-A -CD3G IN_SAME_COMPONENT HLA-DRA -CD3G IN_SAME_COMPONENT HLA-DRB1 -CD3G IN_SAME_COMPONENT LCK -CD3G IN_SAME_COMPONENT SH3BP2 -CD3G IN_SAME_COMPONENT SLA2 -CD3G IN_SAME_COMPONENT ZAP70 -CD3G METABOLIC_CATALYSIS EOMES -CD3G METABOLIC_CATALYSIS FOS -CD3G METABOLIC_CATALYSIS IFNG -CD3G METABOLIC_CATALYSIS LAT -CD3G METABOLIC_CATALYSIS PRF1 -CD3G REACTS_WITH B2M -CD3G REACTS_WITH CBL -CD3G REACTS_WITH CD247 -CD3G REACTS_WITH CD3D -CD3G REACTS_WITH CD3E -CD3G REACTS_WITH CD3G -CD3G REACTS_WITH CD4 -CD3G REACTS_WITH CD8A -CD3G REACTS_WITH CD8B -CD3G REACTS_WITH FYN -CD3G REACTS_WITH HLA-A -CD3G REACTS_WITH HLA-DRA -CD3G REACTS_WITH HLA-DRB1 -CD3G REACTS_WITH LCK -CD3G REACTS_WITH SH3BP2 -CD3G REACTS_WITH SLA2 -CD3G REACTS_WITH ZAP70 -CD3G STATE_CHANGE CBL -CD3G STATE_CHANGE CD28 -CD3G STATE_CHANGE CSK -CD3G STATE_CHANGE DBNL -CD3G STATE_CHANGE FYB -CD3G STATE_CHANGE GRAP2 -CD3G STATE_CHANGE IL2 -CD3G STATE_CHANGE IL2RA -CD3G STATE_CHANGE IL2RB -CD3G STATE_CHANGE IL2RG -CD3G STATE_CHANGE ITK -CD3G STATE_CHANGE JUN -CD3G STATE_CHANGE LCP2 -CD3G STATE_CHANGE MAP4K1 -CD3G STATE_CHANGE PAG1 -CD3G STATE_CHANGE PRKCQ -CD3G STATE_CHANGE PTPN11 -CD3G STATE_CHANGE PTPN6 -CD3G STATE_CHANGE SHC1 -CD3G STATE_CHANGE VAV1 -CD40 IN_SAME_COMPONENT BIRC2 -CD40 IN_SAME_COMPONENT BIRC3 -CD40 IN_SAME_COMPONENT C4BPA -CD40 IN_SAME_COMPONENT CBLB -CD40 IN_SAME_COMPONENT CD40LG -CD40 IN_SAME_COMPONENT JAK3 -CD40 IN_SAME_COMPONENT MAP3K1 -CD40 IN_SAME_COMPONENT TDP2 -CD40 IN_SAME_COMPONENT TRAF1 -CD40 IN_SAME_COMPONENT TRAF2 -CD40 IN_SAME_COMPONENT TRAF3 -CD40 IN_SAME_COMPONENT TRAF6 -CD40LG CO_CONTROL IL2RG -CD40LG CO_CONTROL IL4 -CD40LG CO_CONTROL IL4R -CD40LG CO_CONTROL JAK1 -CD40LG CO_CONTROL JAK3 -CD40LG IN_SAME_COMPONENT BIRC2 -CD40LG IN_SAME_COMPONENT BIRC3 -CD40LG IN_SAME_COMPONENT CBLB -CD40LG IN_SAME_COMPONENT CD40 -CD40LG IN_SAME_COMPONENT ITGAM -CD40LG IN_SAME_COMPONENT ITGB2 -CD40LG IN_SAME_COMPONENT JAK3 -CD40LG IN_SAME_COMPONENT MAP3K1 -CD40LG IN_SAME_COMPONENT TDP2 -CD40LG IN_SAME_COMPONENT TRAF1 -CD40LG IN_SAME_COMPONENT TRAF2 -CD40LG IN_SAME_COMPONENT TRAF3 -CD40LG IN_SAME_COMPONENT TRAF6 -CD40LG METABOLIC_CATALYSIS IRF4 -CD40LG REACTS_WITH BIRC2 -CD40LG REACTS_WITH BIRC3 -CD40LG REACTS_WITH CBLB -CD40LG REACTS_WITH CD40 -CD40LG REACTS_WITH CD40LG -CD40LG REACTS_WITH ITGAM -CD40LG REACTS_WITH ITGB2 -CD40LG REACTS_WITH JAK3 -CD40LG REACTS_WITH MAP3K1 -CD40LG REACTS_WITH TDP2 -CD40LG REACTS_WITH TRAF1 -CD40LG REACTS_WITH TRAF2 -CD40LG REACTS_WITH TRAF3 -CD40LG REACTS_WITH TRAF6 -CD40LG STATE_CHANGE AKT1 -CD40LG STATE_CHANGE MAP2K4 -CD40LG STATE_CHANGE NFKB1 -CD40LG STATE_CHANGE NFKBIA -CD40LG STATE_CHANGE RELA -CD40LG STATE_CHANGE STAT5A -CD40LG STATE_CHANGE TRAF3 -CD40 REACTS_WITH BIRC2 -CD40 REACTS_WITH BIRC3 -CD40 REACTS_WITH C4BPA -CD40 REACTS_WITH CBLB -CD40 REACTS_WITH CD40 -CD40 REACTS_WITH CD40LG -CD40 REACTS_WITH JAK3 -CD40 REACTS_WITH MAP3K1 -CD40 REACTS_WITH TDP2 -CD40 REACTS_WITH TRAF1 -CD40 REACTS_WITH TRAF2 -CD40 REACTS_WITH TRAF3 -CD40 REACTS_WITH TRAF6 -CD40 STATE_CHANGE AKT1 -CD40 STATE_CHANGE MAP2K4 -CD40 STATE_CHANGE NFKB1 -CD40 STATE_CHANGE NFKBIA -CD40 STATE_CHANGE RELA -CD40 STATE_CHANGE STAT5A -CD40 STATE_CHANGE TRAF3 -CD44 IN_SAME_COMPONENT ROCK2 -CD44 INTERACTS_WITH ITGA4 -CD44 INTERACTS_WITH ITGB7 -CD44 REACTS_WITH CD44 -CD44 REACTS_WITH ROCK2 -CD47 IN_SAME_COMPONENT ITGA2B -CD47 IN_SAME_COMPONENT ITGAV -CD47 IN_SAME_COMPONENT ITGB3 -CD47 IN_SAME_COMPONENT THBS1 -CD47 REACTS_WITH CD47 -CD47 REACTS_WITH ITGA2B -CD47 REACTS_WITH ITGAV -CD47 REACTS_WITH ITGB3 -CD47 REACTS_WITH THBS1 -CD4 CO_CONTROL CD28 -CD4 CO_CONTROL FYN -CD4 CO_CONTROL ITK -CD4 CO_CONTROL PTPN11 -CD4 CO_CONTROL STAT4 -CD4 CO_CONTROL TBX21 -CD4 IN_SAME_COMPONENT CBL -CD4 IN_SAME_COMPONENT CD247 -CD4 IN_SAME_COMPONENT CD3D -CD4 IN_SAME_COMPONENT CD3E -CD4 IN_SAME_COMPONENT CD3G -CD4 IN_SAME_COMPONENT CLTA -CD4 IN_SAME_COMPONENT CLTB -CD4 IN_SAME_COMPONENT COPA -CD4 IN_SAME_COMPONENT FYN -CD4 IN_SAME_COMPONENT HLA-DRA -CD4 IN_SAME_COMPONENT HLA-DRB1 -CD4 IN_SAME_COMPONENT LCK -CD4 IN_SAME_COMPONENT SH3BP2 -CD4 IN_SAME_COMPONENT SLA2 -CD4 IN_SAME_COMPONENT ZAP70 -CD4 METABOLIC_CATALYSIS FOS -CD4 METABOLIC_CATALYSIS IFNG -CD4 REACTS_WITH AP2A1 -CD4 REACTS_WITH AP2M1 -CD4 REACTS_WITH CBL -CD4 REACTS_WITH CD247 -CD4 REACTS_WITH CD3D -CD4 REACTS_WITH CD3E -CD4 REACTS_WITH CD3G -CD4 REACTS_WITH CD4 -CD4 REACTS_WITH CLTA -CD4 REACTS_WITH CLTB -CD4 REACTS_WITH COPA -CD4 REACTS_WITH FYN -CD4 REACTS_WITH HLA-DRA -CD4 REACTS_WITH HLA-DRB1 -CD4 REACTS_WITH LCK -CD4 REACTS_WITH SH3BP2 -CD4 REACTS_WITH SLA2 -CD4 REACTS_WITH ZAP70 -CD4 STATE_CHANGE CBL -CD4 STATE_CHANGE CD28 -CD4 STATE_CHANGE CSK -CD4 STATE_CHANGE DBNL -CD4 STATE_CHANGE FYB -CD4 STATE_CHANGE GRAP2 -CD4 STATE_CHANGE ITK -CD4 STATE_CHANGE LCP2 -CD4 STATE_CHANGE MAP4K1 -CD4 STATE_CHANGE PAG1 -CD4 STATE_CHANGE PRKCQ -CD4 STATE_CHANGE PTPN11 -CD4 STATE_CHANGE PTPN6 -CD4 STATE_CHANGE SHC1 -CD4 STATE_CHANGE VAV1 -CD72 IN_SAME_COMPONENT BLNK -CD72 IN_SAME_COMPONENT BTK -CD72 IN_SAME_COMPONENT CD79A -CD72 IN_SAME_COMPONENT CD79B -CD72 IN_SAME_COMPONENT LYN -CD72 IN_SAME_COMPONENT PLCG2 -CD72 IN_SAME_COMPONENT PTPN6 -CD72 IN_SAME_COMPONENT SYK -CD72 REACTS_WITH BLNK -CD72 REACTS_WITH BTK -CD72 REACTS_WITH CD72 -CD72 REACTS_WITH CD79A -CD72 REACTS_WITH CD79B -CD72 REACTS_WITH LYN -CD72 REACTS_WITH PLCG2 -CD72 REACTS_WITH PTPN6 -CD72 REACTS_WITH SYK -CD79A CO_CONTROL CD19 -CD79A CO_CONTROL INPP5D -CD79A CO_CONTROL PIK3CA -CD79A CO_CONTROL PIK3R1 -CD79A CO_CONTROL VAV2 -CD79A IN_SAME_COMPONENT BLNK -CD79A IN_SAME_COMPONENT BTK -CD79A IN_SAME_COMPONENT CD72 -CD79A IN_SAME_COMPONENT CD79B -CD79A IN_SAME_COMPONENT FCGR2B -CD79A IN_SAME_COMPONENT LYN -CD79A IN_SAME_COMPONENT PLCG2 -CD79A IN_SAME_COMPONENT SYK -CD79A REACTS_WITH BLNK -CD79A REACTS_WITH BTK -CD79A REACTS_WITH CD72 -CD79A REACTS_WITH CD79A -CD79A REACTS_WITH CD79B -CD79A REACTS_WITH FCGR2B -CD79A REACTS_WITH LYN -CD79A REACTS_WITH PLCG2 -CD79A REACTS_WITH PTPN6 -CD79A REACTS_WITH SYK -CD79A STATE_CHANGE CD19 -CD79A STATE_CHANGE CD22 -CD79A STATE_CHANGE CSK -CD79A STATE_CHANGE DAPP1 -CD79A STATE_CHANGE DOK1 -CD79A STATE_CHANGE INPP5D -CD79A STATE_CHANGE PIK3CA -CD79A STATE_CHANGE PIK3R1 -CD79A STATE_CHANGE RASA1 -CD79A STATE_CHANGE VAV2 -CD79B CO_CONTROL CD19 -CD79B CO_CONTROL INPP5D -CD79B CO_CONTROL PIK3CA -CD79B CO_CONTROL PIK3R1 -CD79B CO_CONTROL VAV2 -CD79B IN_SAME_COMPONENT BLNK -CD79B IN_SAME_COMPONENT BTK -CD79B IN_SAME_COMPONENT CD72 -CD79B IN_SAME_COMPONENT CD79A -CD79B IN_SAME_COMPONENT FCGR2B -CD79B IN_SAME_COMPONENT LYN -CD79B IN_SAME_COMPONENT PLCG2 -CD79B IN_SAME_COMPONENT SYK -CD79B REACTS_WITH BLNK -CD79B REACTS_WITH BTK -CD79B REACTS_WITH CD72 -CD79B REACTS_WITH CD79A -CD79B REACTS_WITH CD79B -CD79B REACTS_WITH FCGR2B -CD79B REACTS_WITH LYN -CD79B REACTS_WITH PLCG2 -CD79B REACTS_WITH PTPN6 -CD79B REACTS_WITH SYK -CD79B STATE_CHANGE CD19 -CD79B STATE_CHANGE CD22 -CD79B STATE_CHANGE CSK -CD79B STATE_CHANGE DAPP1 -CD79B STATE_CHANGE DOK1 -CD79B STATE_CHANGE INPP5D -CD79B STATE_CHANGE PIK3CA -CD79B STATE_CHANGE PIK3R1 -CD79B STATE_CHANGE RASA1 -CD79B STATE_CHANGE VAV2 -CD81 IN_SAME_COMPONENT ITGA4 -CD81 IN_SAME_COMPONENT ITGB1 -CD81 REACTS_WITH CD81 -CD81 REACTS_WITH ITGA4 -CD81 REACTS_WITH ITGB1 -CD8A CO_CONTROL MAPK8 -CD8A IN_SAME_COMPONENT B2M -CD8A IN_SAME_COMPONENT CBL -CD8A IN_SAME_COMPONENT CD247 -CD8A IN_SAME_COMPONENT CD3D -CD8A IN_SAME_COMPONENT CD3E -CD8A IN_SAME_COMPONENT CD3G -CD8A IN_SAME_COMPONENT CD8B -CD8A IN_SAME_COMPONENT FYN -CD8A IN_SAME_COMPONENT HLA-A -CD8A IN_SAME_COMPONENT LCK -CD8A IN_SAME_COMPONENT ZAP70 -CD8A METABOLIC_CATALYSIS EOMES -CD8A METABOLIC_CATALYSIS LAT -CD8A METABOLIC_CATALYSIS PRF1 -CD8A REACTS_WITH B2M -CD8A REACTS_WITH CBL -CD8A REACTS_WITH CD247 -CD8A REACTS_WITH CD3D -CD8A REACTS_WITH CD3E -CD8A REACTS_WITH CD3G -CD8A REACTS_WITH CD8A -CD8A REACTS_WITH CD8B -CD8A REACTS_WITH FYN -CD8A REACTS_WITH HLA-A -CD8A REACTS_WITH LCK -CD8A REACTS_WITH ZAP70 -CD8A STATE_CHANGE CD28 -CD8A STATE_CHANGE CSK -CD8A STATE_CHANGE GRAP2 -CD8A STATE_CHANGE IL2 -CD8A STATE_CHANGE IL2RA -CD8A STATE_CHANGE IL2RB -CD8A STATE_CHANGE IL2RG -CD8A STATE_CHANGE JUN -CD8A STATE_CHANGE LCP2 -CD8A STATE_CHANGE PAG1 -CD8A STATE_CHANGE PRKCQ -CD8A STATE_CHANGE PTPN6 -CD8A STATE_CHANGE VAV1 -CD8B CO_CONTROL MAPK8 -CD8B IN_SAME_COMPONENT B2M -CD8B IN_SAME_COMPONENT CBL -CD8B IN_SAME_COMPONENT CD247 -CD8B IN_SAME_COMPONENT CD3D -CD8B IN_SAME_COMPONENT CD3E -CD8B IN_SAME_COMPONENT CD3G -CD8B IN_SAME_COMPONENT CD8A -CD8B IN_SAME_COMPONENT FYN -CD8B IN_SAME_COMPONENT HLA-A -CD8B IN_SAME_COMPONENT LCK -CD8B IN_SAME_COMPONENT ZAP70 -CD8B METABOLIC_CATALYSIS EOMES -CD8B METABOLIC_CATALYSIS LAT -CD8B METABOLIC_CATALYSIS PRF1 -CD8B REACTS_WITH B2M -CD8B REACTS_WITH CBL -CD8B REACTS_WITH CD247 -CD8B REACTS_WITH CD3D -CD8B REACTS_WITH CD3E -CD8B REACTS_WITH CD3G -CD8B REACTS_WITH CD8A -CD8B REACTS_WITH CD8B -CD8B REACTS_WITH FYN -CD8B REACTS_WITH HLA-A -CD8B REACTS_WITH LCK -CD8B REACTS_WITH ZAP70 -CD8B STATE_CHANGE CD28 -CD8B STATE_CHANGE CSK -CD8B STATE_CHANGE GRAP2 -CD8B STATE_CHANGE IL2 -CD8B STATE_CHANGE IL2RA -CD8B STATE_CHANGE IL2RB -CD8B STATE_CHANGE IL2RG -CD8B STATE_CHANGE JUN -CD8B STATE_CHANGE LCP2 -CD8B STATE_CHANGE PAG1 -CD8B STATE_CHANGE PRKCQ -CD8B STATE_CHANGE PTPN6 -CD8B STATE_CHANGE VAV1 -CD9 IN_SAME_COMPONENT ITGA6 -CD9 IN_SAME_COMPONENT ITGB1 -CD9 REACTS_WITH CD9 -CD9 REACTS_WITH ITGA6 -CD9 REACTS_WITH ITGB1 -CDC14B STATE_CHANGE FZR1 -CDC25B REACTS_WITH CDC25B -CDC25B STATE_CHANGE CCNB1 -CDC25B STATE_CHANGE CDK1 -CDC25C IN_SAME_COMPONENT YWHAB -CDC25C REACTS_WITH CDC25C -CDC25C REACTS_WITH YWHAB -CDC37 IN_SAME_COMPONENT HSP90AA1 -CDC37 IN_SAME_COMPONENT STK11 -CDC37 REACTS_WITH CDC37 -CDC37 REACTS_WITH HSP90AA1 -CDC37 REACTS_WITH STK11 -CDC42 CO_CONTROL IQGAP1 -CDC42 CO_CONTROL RAC1 -CDC42 IN_SAME_COMPONENT ARHGEF7 -CDC42 IN_SAME_COMPONENT BAIAP2 -CDC42 IN_SAME_COMPONENT CBL -CDC42 IN_SAME_COMPONENT DOCK11 -CDC42 IN_SAME_COMPONENT ENAH -CDC42 IN_SAME_COMPONENT EPS8 -CDC42 IN_SAME_COMPONENT F2RL2 -CDC42 IN_SAME_COMPONENT IQGAP1 -CDC42 IN_SAME_COMPONENT PARD6A -CDC42 IN_SAME_COMPONENT PRKCE -CDC42 IN_SAME_COMPONENT PRKCZ -CDC42 IN_SAME_COMPONENT TNK2 -CDC42 IN_SAME_COMPONENT WAS -CDC42 IN_SAME_COMPONENT WASL -CDC42 INTERACTS_WITH RAC1 -CDC42 REACTS_WITH ARHGEF7 -CDC42 REACTS_WITH BAIAP2 -CDC42 REACTS_WITH CBL -CDC42 REACTS_WITH CDC42 -CDC42 REACTS_WITH DOCK11 -CDC42 REACTS_WITH ENAH -CDC42 REACTS_WITH EPS8 -CDC42 REACTS_WITH F2RL2 -CDC42 REACTS_WITH IQGAP1 -CDC42 REACTS_WITH PARD6A -CDC42 REACTS_WITH PRKCE -CDC42 REACTS_WITH PRKCZ -CDC42 REACTS_WITH TNK2 -CDC42 REACTS_WITH WAS -CDC42 REACTS_WITH WASL -CDC42 STATE_CHANGE BCAR1 -CDC42 STATE_CHANGE CDC42 -CDC42 STATE_CHANGE CDC42BPA -CDC42 STATE_CHANGE CDH1 -CDC42 STATE_CHANGE CSNK1A1 -CDC42 STATE_CHANGE CTNNA1 -CDC42 STATE_CHANGE CTNNB1 -CDC42 STATE_CHANGE DIAPH3 -CDC42 STATE_CHANGE EXOC7 -CDC42 STATE_CHANGE IQGAP1 -CDC42 STATE_CHANGE IQGAP3 -CDC42 STATE_CHANGE LIMK2 -CDC42 STATE_CHANGE MAP2K3 -CDC42 STATE_CHANGE MAP3K1 -CDC42 STATE_CHANGE MAP3K11 -CDC42 STATE_CHANGE MTOR -CDC42 STATE_CHANGE NFATC2 -CDC42 STATE_CHANGE PAK1 -CDC42 STATE_CHANGE PAK2 -CDC42 STATE_CHANGE PAK4 -CDC42 STATE_CHANGE PARD6A -CDC42 STATE_CHANGE PLD1 -CDC42 STATE_CHANGE PRKCZ -CDC42 STATE_CHANGE RASGRF1 -CDC42 STATE_CHANGE RPS6KB1 -CDC42 STATE_CHANGE SEPT2 -CDC42 STATE_CHANGE TIAM1 -CDC42 STATE_CHANGE VAV2 -CDC42 STATE_CHANGE WASL -CDC6 IN_SAME_COMPONENT ATR -CDC6 IN_SAME_COMPONENT ATRIP -CDC6 IN_SAME_COMPONENT HUS1 -CDC6 IN_SAME_COMPONENT RAD1 -CDC6 IN_SAME_COMPONENT RAD17 -CDC6 IN_SAME_COMPONENT RAD9A -CDC6 IN_SAME_COMPONENT RFC2 -CDC6 IN_SAME_COMPONENT RFC3 -CDC6 IN_SAME_COMPONENT RFC4 -CDC6 IN_SAME_COMPONENT RFC5 -CDC6 IN_SAME_COMPONENT RPA1 -CDC6 IN_SAME_COMPONENT RPA2 -CDC6 IN_SAME_COMPONENT TOPBP1 -CDC6 REACTS_WITH ATR -CDC6 REACTS_WITH ATRIP -CDC6 REACTS_WITH CDC6 -CDC6 REACTS_WITH HUS1 -CDC6 REACTS_WITH RAD1 -CDC6 REACTS_WITH RAD17 -CDC6 REACTS_WITH RAD9A -CDC6 REACTS_WITH RFC2 -CDC6 REACTS_WITH RFC3 -CDC6 REACTS_WITH RFC4 -CDC6 REACTS_WITH RFC5 -CDC6 REACTS_WITH RPA1 -CDC6 REACTS_WITH RPA2 -CDC6 REACTS_WITH TOPBP1 -CDCA8 IN_SAME_COMPONENT AURKB -CDCA8 IN_SAME_COMPONENT BIRC5 -CDCA8 IN_SAME_COMPONENT CUL3 -CDCA8 IN_SAME_COMPONENT EVI5 -CDCA8 IN_SAME_COMPONENT INCENP -CDCA8 IN_SAME_COMPONENT KLHL13 -CDCA8 IN_SAME_COMPONENT KLHL9 -CDCA8 REACTS_WITH AURKB -CDCA8 REACTS_WITH BIRC5 -CDCA8 REACTS_WITH CDCA8 -CDCA8 REACTS_WITH CUL3 -CDCA8 REACTS_WITH EVI5 -CDCA8 REACTS_WITH INCENP -CDCA8 REACTS_WITH KLHL13 -CDCA8 REACTS_WITH KLHL9 -CDCA8 REACTS_WITH PSMA3 -CDCA8 STATE_CHANGE CENPA -CDCA8 STATE_CHANGE KIF23 -CDCA8 STATE_CHANGE KIF2C -CDCA8 STATE_CHANGE RACGAP1 -CDH1 CO_CONTROL PVRL2 -CDH1 CO_CONTROL ZBTB33 -CDH1 IN_SAME_COMPONENT CTNNA1 -CDH1 IN_SAME_COMPONENT CTNNB1 -CDH1 IN_SAME_COMPONENT CTNND1 -CDH1 IN_SAME_COMPONENT F2RL2 -CDH1 IN_SAME_COMPONENT IQGAP1 -CDH1 IN_SAME_COMPONENT ITGAE -CDH1 IN_SAME_COMPONENT ITGB7 -CDH1 IN_SAME_COMPONENT JUP -CDH1 IN_SAME_COMPONENT LIMA1 -CDH1 IN_SAME_COMPONENT NUMB -CDH1 IN_SAME_COMPONENT PARD6A -CDH1 IN_SAME_COMPONENT ZBTB33 -CDH1 INTERACTS_WITH ERBB2 -CDH1 METABOLIC_CATALYSIS MMP7 -CDH1 REACTS_WITH CDH1 -CDH1 REACTS_WITH CTNNA1 -CDH1 REACTS_WITH CTNNB1 -CDH1 REACTS_WITH CTNND1 -CDH1 REACTS_WITH F2RL2 -CDH1 REACTS_WITH IGF1R -CDH1 REACTS_WITH IGF2 -CDH1 REACTS_WITH IQGAP1 -CDH1 REACTS_WITH ITGA6 -CDH1 REACTS_WITH ITGAE -CDH1 REACTS_WITH ITGB4 -CDH1 REACTS_WITH ITGB7 -CDH1 REACTS_WITH JUP -CDH1 REACTS_WITH LIMA1 -CDH1 REACTS_WITH MET -CDH1 REACTS_WITH NUMB -CDH1 REACTS_WITH PARD6A -CDH1 REACTS_WITH PIK3CA -CDH1 REACTS_WITH PIK3R1 -CDH1 REACTS_WITH RHOA -CDH1 REACTS_WITH ZBTB33 -CDH1 STATE_CHANGE ACTN1 -CDH1 STATE_CHANGE CTTN -CDH1 STATE_CHANGE DLG1 -CDH1 STATE_CHANGE EFNA1 -CDH1 STATE_CHANGE EGF -CDH1 STATE_CHANGE EGFR -CDH1 STATE_CHANGE ENAH -CDH1 STATE_CHANGE EPHA2 -CDH1 STATE_CHANGE EXOC3 -CDH1 STATE_CHANGE EXOC4 -CDH1 STATE_CHANGE FMN1 -CDH1 STATE_CHANGE HGF -CDH1 STATE_CHANGE IGF1 -CDH1 STATE_CHANGE IGF1R -CDH1 STATE_CHANGE JUB -CDH1 STATE_CHANGE KIFC3 -CDH1 STATE_CHANGE MET -CDH1 STATE_CHANGE MGAT3 -CDH1 STATE_CHANGE MYO6 -CDH1 STATE_CHANGE PIK3CA -CDH1 STATE_CHANGE PIK3R1 -CDH1 STATE_CHANGE PIP5K1A -CDH1 STATE_CHANGE PIP5K1C -CDH1 STATE_CHANGE PLEKHA7 -CDH1 STATE_CHANGE RHOA -CDH1 STATE_CHANGE SRC -CDH1 STATE_CHANGE STX4 -CDH1 STATE_CHANGE TJP1 -CDH1 STATE_CHANGE VASP -CDH1 STATE_CHANGE VCL -CDH1 STATE_CHANGE ZYX -CDH2 IN_SAME_COMPONENT AXIN1 -CDH2 IN_SAME_COMPONENT CREBBP -CDH2 IN_SAME_COMPONENT CTNNA1 -CDH2 IN_SAME_COMPONENT CTNNB1 -CDH2 IN_SAME_COMPONENT CTNND1 -CDH2 IN_SAME_COMPONENT FER -CDH2 IN_SAME_COMPONENT LRP5 -CDH2 IN_SAME_COMPONENT PTPN1 -CDH2 METABOLIC_CATALYSIS MMP9 -CDH2 REACTS_WITH AXIN1 -CDH2 REACTS_WITH CDH2 -CDH2 REACTS_WITH CREBBP -CDH2 REACTS_WITH CTNNA1 -CDH2 REACTS_WITH CTNNB1 -CDH2 REACTS_WITH CTNND1 -CDH2 REACTS_WITH LRP5 -CDH2 REACTS_WITH PTPN1 -CDH2 STATE_CHANGE CDH2 -CDH2 STATE_CHANGE CTNNA1 -CDH2 STATE_CHANGE CTNND1 -CDH2 STATE_CHANGE FER -CDH2 STATE_CHANGE FGFR1 -CDH2 STATE_CHANGE GJA1 -CDH2 STATE_CHANGE GRIA2 -CDH2 STATE_CHANGE PIK3CA -CDH2 STATE_CHANGE PIK3R1 -CDH2 STATE_CHANGE PIP5K1C -CDH2 STATE_CHANGE PTPN11 -CDH2 STATE_CHANGE RAC1 -CDH2 STATE_CHANGE RHOA -CDH5 IN_SAME_COMPONENT CTNNA1 -CDH5 IN_SAME_COMPONENT CTNNB1 -CDH5 IN_SAME_COMPONENT IQGAP1 -CDH5 IN_SAME_COMPONENT KDR -CDH5 IN_SAME_COMPONENT VEGFA -CDH5 REACTS_WITH CDH5 -CDH5 REACTS_WITH CTNNA1 -CDH5 REACTS_WITH CTNNB1 -CDH5 REACTS_WITH IQGAP1 -CDH5 REACTS_WITH KDR -CDH5 REACTS_WITH VEGFA -CDH5 STATE_CHANGE PTPRJ -CDK1 CO_CONTROL INCENP -CDK1 CO_CONTROL PLK1 -CDK1 IN_SAME_COMPONENT CCNB1 -CDK1 REACTS_WITH CCNB1 -CDK1 REACTS_WITH CDK1 -CDK1 STATE_CHANGE BUB1 -CDK1 STATE_CHANGE BUB1B -CDK1 STATE_CHANGE ERCC6L -CDK1 STATE_CHANGE FBXO5 -CDK1 STATE_CHANGE GOLGA2 -CDK1 STATE_CHANGE GORASP1 -CDK1 STATE_CHANGE RAB1A -CDK1 STATE_CHANGE RXRA -CDK1 STATE_CHANGE WEE1 -CDK2 CO_CONTROL CDKN1B -CDK2 CO_CONTROL MAPK14 -CDK2 CO_CONTROL MLST8 -CDK2 CO_CONTROL MTOR -CDK2 CO_CONTROL RPTOR -CDK2 IN_SAME_COMPONENT CCNA2 -CDK2 IN_SAME_COMPONENT CCNE1 -CDK2 IN_SAME_COMPONENT CDKN1A -CDK2 IN_SAME_COMPONENT CDKN1B -CDK2 IN_SAME_COMPONENT CEBPA -CDK2 INTERACTS_WITH CCNA2 -CDK2 REACTS_WITH CDK2 -CDK2 REACTS_WITH CDKN1A -CDK2 REACTS_WITH CDKN1B -CDK2 REACTS_WITH CEBPA -CDK2 REACTS_WITH SMARCA2 -CDK2 STATE_CHANGE ABL1 -CDK2 STATE_CHANGE ATR -CDK2 STATE_CHANGE ATRIP -CDK2 STATE_CHANGE BARD1 -CDK2 STATE_CHANGE BRCA1 -CDK2 STATE_CHANGE E2F5 -CDK2 STATE_CHANGE FOXO1 -CDK2 STATE_CHANGE MDM2 -CDK2 STATE_CHANGE RB1 -CDK2 STATE_CHANGE RRN3 -CDK2 STATE_CHANGE TFDP1 -CDK2 STATE_CHANGE TP53 -CDK4 IN_SAME_COMPONENT CCND1 -CDK4 STATE_CHANGE RB1 -CDK5 IN_SAME_COMPONENT CDK5R1 -CDK5 IN_SAME_COMPONENT CDK5R2 -CDK5R1 IN_SAME_COMPONENT CDK5 -CDK5R1 REACTS_WITH CDK5 -CDK5R1 REACTS_WITH CDK5R1 -CDK5R1 STATE_CHANGE NDEL1 -CDK5R2 IN_SAME_COMPONENT CDK5 -CDK5R2 REACTS_WITH CDK5 -CDK5R2 REACTS_WITH CDK5R2 -CDK5R2 STATE_CHANGE NDEL1 -CDK5 REACTS_WITH CDK5 -CDK5 REACTS_WITH CDK5R1 -CDK5 REACTS_WITH CDK5R2 -CDK5 STATE_CHANGE NDEL1 -CDK6 CO_CONTROL AR -CDK6 CO_CONTROL CCND1 -CDK6 IN_SAME_COMPONENT AR -CDK6 IN_SAME_COMPONENT CCND1 -CDK6 IN_SAME_COMPONENT MYB -CDK6 METABOLIC_CATALYSIS KLK3 -CDK6 REACTS_WITH AR -CDK6 REACTS_WITH CCND1 -CDK6 REACTS_WITH CDK6 -CDK6 REACTS_WITH MYB -CDK7 IN_SAME_COMPONENT CCNH -CDK7 IN_SAME_COMPONENT MNAT1 -CDK7 STATE_CHANGE CCNH -CDK7 STATE_CHANGE RARA -CDKN1A CO_CONTROL AKT2 -CDKN1A CO_CONTROL CDKN1A -CDKN1A IN_SAME_COMPONENT AKT2 -CDKN1A IN_SAME_COMPONENT CDK2 -CDKN1A REACTS_WITH AKT2 -CDKN1A REACTS_WITH CDK2 -CDKN1A REACTS_WITH CDKN1A -CDKN1A STATE_CHANGE RB1 -CDKN1A STATE_CHANGE TFDP1 -CDKN1B CO_CONTROL AKAP13 -CDKN1B CO_CONTROL ARHGEF1 -CDKN1B CO_CONTROL CDK2 -CDKN1B IN_SAME_COMPONENT CDK2 -CDKN1B IN_SAME_COMPONENT KPNA1 -CDKN1B IN_SAME_COMPONENT SKP2 -CDKN1B INTERACTS_WITH AKT1 -CDKN1B REACTS_WITH CDK2 -CDKN1B REACTS_WITH CDKN1B -CDKN1B REACTS_WITH KPNA1 -CDKN1B REACTS_WITH RB1 -CDKN1B REACTS_WITH SKP2 -CDKN1B STATE_CHANGE FOXO1 -CDKN1B STATE_CHANGE RHOA -CDON IN_SAME_COMPONENT SHH -CDON METABOLIC_CATALYSIS GLI2 -CDON REACTS_WITH CDON -CDON REACTS_WITH SHH -CDX1 IN_SAME_COMPONENT CTNNB1 -CDX1 IN_SAME_COMPONENT LEF1 -CDX1 METABOLIC_CATALYSIS CDX1 -CDX1 REACTS_WITH CDX1 -CDX1 REACTS_WITH CTNNB1 -CDX1 REACTS_WITH LEF1 -CEBPA CO_CONTROL AR -CEBPA CO_CONTROL CARM1 -CEBPA CO_CONTROL NCOA2 -CEBPA CO_CONTROL TFDP1 -CEBPA IN_SAME_COMPONENT CDK2 -CEBPA IN_SAME_COMPONENT E2F4 -CEBPA IN_SAME_COMPONENT RB1 -CEBPA IN_SAME_COMPONENT SMARCA2 -CEBPA METABOLIC_CATALYSIS KLK3 -CEBPA METABOLIC_CATALYSIS LYZ -CEBPA METABOLIC_CATALYSIS MYC -CEBPA REACTS_WITH CDK2 -CEBPA REACTS_WITH CEBPA -CEBPA REACTS_WITH E2F4 -CEBPA REACTS_WITH RB1 -CEBPA REACTS_WITH SMARCA2 -CEBPB CO_CONTROL BCL6 -CEBPB CO_CONTROL FOS -CEBPB CO_CONTROL FOXA1 -CEBPB CO_CONTROL HMGA1 -CEBPB CO_CONTROL JUN -CEBPB CO_CONTROL RBL1 -CEBPB CO_CONTROL SMAD4 -CEBPB CO_CONTROL SPI1 -CEBPB CO_CONTROL STAT3 -CEBPB CO_CONTROL STAT6 -CEBPB CO_CONTROL TFDP1 -CEBPB IN_SAME_COMPONENT PTGES2 -CEBPB IN_SAME_COMPONENT SMAD4 -CEBPB METABOLIC_CATALYSIS ARG1 -CEBPB METABOLIC_CATALYSIS CDKN2B -CEBPB METABOLIC_CATALYSIS CEBPB -CEBPB METABOLIC_CATALYSIS DAPK1 -CEBPB METABOLIC_CATALYSIS HSP90B1 -CEBPB METABOLIC_CATALYSIS ID1 -CEBPB METABOLIC_CATALYSIS IGHE -CEBPB METABOLIC_CATALYSIS IGHG1 -CEBPB METABOLIC_CATALYSIS IRF9 -CEBPB METABOLIC_CATALYSIS LBP -CEBPB METABOLIC_CATALYSIS SERPINA1 -CEBPB REACTS_WITH CEBPB -CEBPB REACTS_WITH PTGES2 -CEBPB REACTS_WITH SMAD4 -CEBPZ CO_CONTROL TP53 -CENPA CO_CONTROL PEBP1 -CENPA STATE_CHANGE AURKB -CENPA STATE_CHANGE BIRC5 -CENPA STATE_CHANGE CDCA8 -CENPA STATE_CHANGE INCENP -CEP164 IN_SAME_COMPONENT ATR -CEP164 IN_SAME_COMPONENT ATRIP -CEP164 IN_SAME_COMPONENT CHEK1 -CEP164 IN_SAME_COMPONENT CLSPN -CEP164 IN_SAME_COMPONENT HUS1 -CEP164 IN_SAME_COMPONENT RAD1 -CEP164 IN_SAME_COMPONENT RAD17 -CEP164 IN_SAME_COMPONENT RAD9A -CEP164 IN_SAME_COMPONENT RFC2 -CEP164 IN_SAME_COMPONENT RFC3 -CEP164 IN_SAME_COMPONENT RFC4 -CEP164 IN_SAME_COMPONENT RFC5 -CEP164 IN_SAME_COMPONENT RPA1 -CEP164 IN_SAME_COMPONENT RPA2 -CEP164 IN_SAME_COMPONENT TIMELESS -CEP164 IN_SAME_COMPONENT TIPIN -CEP164 IN_SAME_COMPONENT TOPBP1 -CEP164 REACTS_WITH ATR -CEP164 REACTS_WITH ATRIP -CEP164 REACTS_WITH CEP164 -CEP164 REACTS_WITH CHEK1 -CEP164 REACTS_WITH CLSPN -CEP164 REACTS_WITH HUS1 -CEP164 REACTS_WITH RAD1 -CEP164 REACTS_WITH RAD17 -CEP164 REACTS_WITH RAD9A -CEP164 REACTS_WITH RFC2 -CEP164 REACTS_WITH RFC3 -CEP164 REACTS_WITH RFC4 -CEP164 REACTS_WITH RFC5 -CEP164 REACTS_WITH RPA1 -CEP164 REACTS_WITH RPA2 -CEP164 REACTS_WITH TIMELESS -CEP164 REACTS_WITH TIPIN -CEP164 REACTS_WITH TOPBP1 -CER1 REACTS_WITH BAMBI -CER1 REACTS_WITH BMPR2 -CER1 REACTS_WITH CER1 -CFL1 CO_CONTROL DIAPH1 -CFL1 STATE_CHANGE ACTA1 -CFLAR IN_SAME_COMPONENT CASP8 -CFLAR IN_SAME_COMPONENT FADD -CFLAR IN_SAME_COMPONENT FAS -CFLAR IN_SAME_COMPONENT FASLG -CFLAR REACTS_WITH CASP10 -CFLAR REACTS_WITH CASP8 -CFLAR REACTS_WITH CFLAR -CFLAR REACTS_WITH FADD -CFLAR REACTS_WITH FAS -CFLAR REACTS_WITH FASLG -CFLAR STATE_CHANGE CASP8 -CFLAR STATE_CHANGE FADD -CFLAR STATE_CHANGE FAS -CFLAR STATE_CHANGE FASLG -CFLAR STATE_CHANGE RIPK1 -CHD3 IN_SAME_COMPONENT CHD4 -CHD3 IN_SAME_COMPONENT GATA1 -CHD3 IN_SAME_COMPONENT GATAD2A -CHD3 IN_SAME_COMPONENT GATAD2B -CHD3 IN_SAME_COMPONENT HDAC1 -CHD3 IN_SAME_COMPONENT HDAC2 -CHD3 IN_SAME_COMPONENT MBD2 -CHD3 IN_SAME_COMPONENT MBD3 -CHD3 IN_SAME_COMPONENT MBD3L2 -CHD3 IN_SAME_COMPONENT MTA2 -CHD3 IN_SAME_COMPONENT RBBP4 -CHD3 IN_SAME_COMPONENT RBBP7 -CHD3 IN_SAME_COMPONENT ZFPM1 -CHD3 REACTS_WITH CHD3 -CHD3 REACTS_WITH CHD4 -CHD3 REACTS_WITH GATA1 -CHD3 REACTS_WITH GATAD2A -CHD3 REACTS_WITH GATAD2B -CHD3 REACTS_WITH HDAC1 -CHD3 REACTS_WITH HDAC2 -CHD3 REACTS_WITH MBD2 -CHD3 REACTS_WITH MBD3 -CHD3 REACTS_WITH MBD3L2 -CHD3 REACTS_WITH MTA2 -CHD3 REACTS_WITH PRMT5 -CHD3 REACTS_WITH RBBP4 -CHD3 REACTS_WITH RBBP7 -CHD3 REACTS_WITH WDR77 -CHD3 REACTS_WITH ZFPM1 -CHD4 IN_SAME_COMPONENT CHD3 -CHD4 IN_SAME_COMPONENT GATA1 -CHD4 IN_SAME_COMPONENT GATAD2A -CHD4 IN_SAME_COMPONENT GATAD2B -CHD4 IN_SAME_COMPONENT HDAC1 -CHD4 IN_SAME_COMPONENT HDAC2 -CHD4 IN_SAME_COMPONENT MBD2 -CHD4 IN_SAME_COMPONENT MBD3 -CHD4 IN_SAME_COMPONENT MBD3L2 -CHD4 IN_SAME_COMPONENT MTA2 -CHD4 IN_SAME_COMPONENT RBBP4 -CHD4 IN_SAME_COMPONENT RBBP7 -CHD4 IN_SAME_COMPONENT ZFPM1 -CHD4 REACTS_WITH CHD3 -CHD4 REACTS_WITH CHD4 -CHD4 REACTS_WITH GATA1 -CHD4 REACTS_WITH GATAD2A -CHD4 REACTS_WITH GATAD2B -CHD4 REACTS_WITH HDAC1 -CHD4 REACTS_WITH HDAC2 -CHD4 REACTS_WITH MBD2 -CHD4 REACTS_WITH MBD3 -CHD4 REACTS_WITH MBD3L2 -CHD4 REACTS_WITH MTA2 -CHD4 REACTS_WITH PRMT5 -CHD4 REACTS_WITH RBBP4 -CHD4 REACTS_WITH RBBP7 -CHD4 REACTS_WITH WDR77 -CHD4 REACTS_WITH ZFPM1 -CHD7 IN_SAME_COMPONENT NLK -CHD7 IN_SAME_COMPONENT PPARG -CHD7 IN_SAME_COMPONENT SETDB1 -CHD7 REACTS_WITH CHD7 -CHD7 REACTS_WITH NLK -CHD7 REACTS_WITH PPARG -CHD7 REACTS_WITH SETDB1 -CHD8 IN_SAME_COMPONENT CTNNB1 -CHD8 REACTS_WITH CHD8 -CHD8 REACTS_WITH CTNNB1 -CHEK1 IN_SAME_COMPONENT ATR -CHEK1 IN_SAME_COMPONENT ATRIP -CHEK1 IN_SAME_COMPONENT CEP164 -CHEK1 IN_SAME_COMPONENT CLSPN -CHEK1 IN_SAME_COMPONENT HUS1 -CHEK1 IN_SAME_COMPONENT RAD1 -CHEK1 IN_SAME_COMPONENT RAD17 -CHEK1 IN_SAME_COMPONENT RAD9A -CHEK1 IN_SAME_COMPONENT RFC2 -CHEK1 IN_SAME_COMPONENT RFC3 -CHEK1 IN_SAME_COMPONENT RFC4 -CHEK1 IN_SAME_COMPONENT RFC5 -CHEK1 IN_SAME_COMPONENT RPA1 -CHEK1 IN_SAME_COMPONENT RPA2 -CHEK1 IN_SAME_COMPONENT TIMELESS -CHEK1 IN_SAME_COMPONENT TIPIN -CHEK1 IN_SAME_COMPONENT TOPBP1 -CHEK1 REACTS_WITH ATR -CHEK1 REACTS_WITH ATRIP -CHEK1 REACTS_WITH CEP164 -CHEK1 REACTS_WITH CHEK1 -CHEK1 REACTS_WITH CLSPN -CHEK1 REACTS_WITH HUS1 -CHEK1 REACTS_WITH RAD1 -CHEK1 REACTS_WITH RAD17 -CHEK1 REACTS_WITH RAD9A -CHEK1 REACTS_WITH RFC2 -CHEK1 REACTS_WITH RFC3 -CHEK1 REACTS_WITH RFC4 -CHEK1 REACTS_WITH RFC5 -CHEK1 REACTS_WITH RPA1 -CHEK1 REACTS_WITH RPA2 -CHEK1 REACTS_WITH TIMELESS -CHEK1 REACTS_WITH TIPIN -CHEK1 REACTS_WITH TOPBP1 -CHEK1 STATE_CHANGE BRCA2 -CHEK1 STATE_CHANGE CDC25A -CHEK1 STATE_CHANGE CDC25C -CHEK1 STATE_CHANGE RAD51 -CHEK2 STATE_CHANGE CDC25A -CHEK2 STATE_CHANGE CDC25C -CHN1 STATE_CHANGE RAC1 -CHN2 STATE_CHANGE RAC1 -CHP REACTS_WITH CALM1 -CHP REACTS_WITH CHP -CHRDL1 REACTS_WITH BAMBI -CHRDL1 REACTS_WITH BMPR2 -CHRDL1 REACTS_WITH CHRDL1 -CHRD REACTS_WITH BAMBI -CHRD REACTS_WITH BMPR2 -CHRD REACTS_WITH CHRD -CHRNA1 REACTS_WITH CHRNA1 -CHUK CO_CONTROL CHUK -CHUK CO_CONTROL ERC1 -CHUK CO_CONTROL IKBKB -CHUK CO_CONTROL IKBKG -CHUK CO_CONTROL MAP3K14 -CHUK CO_CONTROL PRKCA -CHUK IN_SAME_COMPONENT ERC1 -CHUK IN_SAME_COMPONENT IKBKB -CHUK IN_SAME_COMPONENT IKBKG -CHUK IN_SAME_COMPONENT PRKCA -CHUK REACTS_WITH CHUK -CHUK REACTS_WITH ERC1 -CHUK REACTS_WITH IKBKB -CHUK REACTS_WITH IKBKG -CHUK REACTS_WITH PRKCA -CHUK REACTS_WITH TNFAIP3 -CHUK STATE_CHANGE FOXO3 -CHUK STATE_CHANGE NFKB1 -CHUK STATE_CHANGE NFKB2 -CHUK STATE_CHANGE NFKBIA -CHUK STATE_CHANGE RELA -CHUK STATE_CHANGE RELB -CISH IN_SAME_COMPONENT IL2RB -CISH IN_SAME_COMPONENT JAK1 -CISH IN_SAME_COMPONENT LCK -CISH STATE_CHANGE IL2 -CISH STATE_CHANGE IL2RA -CISH STATE_CHANGE IL2RB -CISH STATE_CHANGE IL2RG -CISH STATE_CHANGE JAK1 -CISH STATE_CHANGE JAK3 -CISH STATE_CHANGE LCK -CITED1 CO_CONTROL CITED1 -CITED1 CO_CONTROL CTBP1 -CITED1 CO_CONTROL HDAC1 -CITED1 CO_CONTROL HDAC2 -CITED1 CO_CONTROL HSPA8 -CITED1 CO_CONTROL NCOR1 -CITED1 CO_CONTROL RBBP4 -CITED1 CO_CONTROL RBBP7 -CITED1 CO_CONTROL SAP18 -CITED1 CO_CONTROL SAP30 -CITED1 CO_CONTROL SIN3A -CITED1 CO_CONTROL SIN3B -CITED1 CO_CONTROL SKI -CITED1 CO_CONTROL SNIP1 -CITED1 CO_CONTROL TGIF1 -CITED1 IN_SAME_COMPONENT HSPA8 -CITED1 STATE_CHANGE SMAD2 -CITED1 STATE_CHANGE SMAD4 -CITED2 REACTS_WITH ARNT -CITED2 REACTS_WITH CITED2 -CITED2 REACTS_WITH HDAC7 -CITED2 REACTS_WITH HIF1A -CKAP5 IN_SAME_COMPONENT AURKA -CKAP5 IN_SAME_COMPONENT TACC1 -CKAP5 IN_SAME_COMPONENT TDRD7 -CKAP5 REACTS_WITH AURKA -CKAP5 REACTS_WITH CKAP5 -CKAP5 REACTS_WITH TACC1 -CKAP5 REACTS_WITH TDRD7 -CLDN1 IN_SAME_COMPONENT F11R -CLDN1 REACTS_WITH CLDN1 -CLDN1 REACTS_WITH F11R -CLIP1 IN_SAME_COMPONENT PAFAH1B1 -CLIP1 REACTS_WITH CLIP1 -CLIP1 REACTS_WITH PAFAH1B1 -CLOCK IN_SAME_COMPONENT ARNTL -CLOCK IN_SAME_COMPONENT NPAS2 -CLOCK METABOLIC_CATALYSIS NR1D1 -CLOCK METABOLIC_CATALYSIS TIMELESS -CLOCK REACTS_WITH ARNTL -CLOCK REACTS_WITH CLOCK -CLOCK REACTS_WITH NPAS2 -CLSPN IN_SAME_COMPONENT ATR -CLSPN IN_SAME_COMPONENT ATRIP -CLSPN IN_SAME_COMPONENT CEP164 -CLSPN IN_SAME_COMPONENT CHEK1 -CLSPN IN_SAME_COMPONENT HUS1 -CLSPN IN_SAME_COMPONENT RAD1 -CLSPN IN_SAME_COMPONENT RAD17 -CLSPN IN_SAME_COMPONENT RAD9A -CLSPN IN_SAME_COMPONENT RFC2 -CLSPN IN_SAME_COMPONENT RFC3 -CLSPN IN_SAME_COMPONENT RFC4 -CLSPN IN_SAME_COMPONENT RFC5 -CLSPN IN_SAME_COMPONENT RPA1 -CLSPN IN_SAME_COMPONENT RPA2 -CLSPN IN_SAME_COMPONENT TIMELESS -CLSPN IN_SAME_COMPONENT TIPIN -CLSPN IN_SAME_COMPONENT TOPBP1 -CLSPN REACTS_WITH ATR -CLSPN REACTS_WITH ATRIP -CLSPN REACTS_WITH CEP164 -CLSPN REACTS_WITH CHEK1 -CLSPN REACTS_WITH CLSPN -CLSPN REACTS_WITH HUS1 -CLSPN REACTS_WITH RAD1 -CLSPN REACTS_WITH RAD17 -CLSPN REACTS_WITH RAD9A -CLSPN REACTS_WITH RFC2 -CLSPN REACTS_WITH RFC3 -CLSPN REACTS_WITH RFC4 -CLSPN REACTS_WITH RFC5 -CLSPN REACTS_WITH RPA1 -CLSPN REACTS_WITH RPA2 -CLSPN REACTS_WITH TIMELESS -CLSPN REACTS_WITH TIPIN -CLSPN REACTS_WITH TOPBP1 -CLTA IN_SAME_COMPONENT ARFGAP1 -CLTA IN_SAME_COMPONENT CD4 -CLTA IN_SAME_COMPONENT CLTB -CLTA IN_SAME_COMPONENT COPA -CLTA REACTS_WITH ARFGAP1 -CLTA REACTS_WITH CD4 -CLTA REACTS_WITH CLTA -CLTA REACTS_WITH CLTB -CLTA REACTS_WITH COPA -CLTA REACTS_WITH GBF1 -CLTA REACTS_WITH GOSR2 -CLTA REACTS_WITH USO1 -CLTB IN_SAME_COMPONENT ARFGAP1 -CLTB IN_SAME_COMPONENT CD4 -CLTB IN_SAME_COMPONENT CLTA -CLTB IN_SAME_COMPONENT COPA -CLTB REACTS_WITH ARFGAP1 -CLTB REACTS_WITH CD4 -CLTB REACTS_WITH CLTA -CLTB REACTS_WITH CLTB -CLTB REACTS_WITH COPA -CLTB REACTS_WITH GBF1 -CLTB REACTS_WITH GOSR2 -CLTB REACTS_WITH USO1 -CLTC IN_SAME_COMPONENT ACAP1 -CLTC IN_SAME_COMPONENT SLC2A4 -CLTC REACTS_WITH ACAP1 -CLTC REACTS_WITH CLTC -CLTC REACTS_WITH SLC2A4 -CLTC STATE_CHANGE CASP8 -CLTC STATE_CHANGE FADD -CLTC STATE_CHANGE FAS -CLTC STATE_CHANGE FASLG -CMTM2 CO_CONTROL AR -CMTM2 METABOLIC_CATALYSIS KLK3 -CNGA1 IN_SAME_COMPONENT CNGB1 -CNGA1 REACTS_WITH CNGA1 -CNGA1 REACTS_WITH CNGB1 -CNGA3 IN_SAME_COMPONENT CNGB3 -CNGA3 REACTS_WITH CNGA3 -CNGA3 REACTS_WITH CNGB3 -CNGB1 IN_SAME_COMPONENT CNGA1 -CNGB1 REACTS_WITH CNGA1 -CNGB1 REACTS_WITH CNGB1 -CNGB3 IN_SAME_COMPONENT CNGA3 -CNGB3 REACTS_WITH CNGA3 -CNGB3 REACTS_WITH CNGB3 -CNTN1 IN_SAME_COMPONENT NOTCH1 -CNTN1 IN_SAME_COMPONENT NOTCH2 -CNTN1 REACTS_WITH CNTN1 -CNTN1 REACTS_WITH NOTCH1 -CNTN1 REACTS_WITH NOTCH2 -CNTN6 IN_SAME_COMPONENT NOTCH1 -CNTN6 REACTS_WITH CNTN6 -CNTN6 REACTS_WITH NOTCH1 -COL11A1 IN_SAME_COMPONENT COL11A2 -COL11A1 IN_SAME_COMPONENT COL2A1 -COL11A1 IN_SAME_COMPONENT ITGA2 -COL11A1 IN_SAME_COMPONENT ITGB1 -COL11A1 REACTS_WITH COL11A1 -COL11A1 REACTS_WITH COL11A2 -COL11A1 REACTS_WITH COL2A1 -COL11A1 REACTS_WITH ITGA2 -COL11A1 REACTS_WITH ITGB1 -COL11A2 IN_SAME_COMPONENT COL11A1 -COL11A2 IN_SAME_COMPONENT COL2A1 -COL11A2 IN_SAME_COMPONENT ITGA2 -COL11A2 IN_SAME_COMPONENT ITGB1 -COL11A2 REACTS_WITH COL11A1 -COL11A2 REACTS_WITH COL11A2 -COL11A2 REACTS_WITH COL2A1 -COL11A2 REACTS_WITH ITGA2 -COL11A2 REACTS_WITH ITGB1 -COL17A1 REACTS_WITH ITGA6 -COL17A1 REACTS_WITH ITGB4 -COL18A1 IN_SAME_COMPONENT ITGA5 -COL18A1 IN_SAME_COMPONENT ITGB1 -COL18A1 REACTS_WITH COL18A1 -COL18A1 REACTS_WITH ITGA5 -COL18A1 REACTS_WITH ITGB1 -COL1A1 IN_SAME_COMPONENT COL1A2 -COL1A1 IN_SAME_COMPONENT FIGF -COL1A1 IN_SAME_COMPONENT FLT4 -COL1A1 IN_SAME_COMPONENT ITGA1 -COL1A1 IN_SAME_COMPONENT ITGA11 -COL1A1 IN_SAME_COMPONENT ITGA2 -COL1A1 IN_SAME_COMPONENT ITGAV -COL1A1 IN_SAME_COMPONENT ITGB1 -COL1A1 IN_SAME_COMPONENT ITGB3 -COL1A1 REACTS_WITH COL1A1 -COL1A1 REACTS_WITH COL1A2 -COL1A1 REACTS_WITH FIGF -COL1A1 REACTS_WITH FLT4 -COL1A1 REACTS_WITH ITGA1 -COL1A1 REACTS_WITH ITGA11 -COL1A1 REACTS_WITH ITGA2 -COL1A1 REACTS_WITH ITGAV -COL1A1 REACTS_WITH ITGB1 -COL1A1 REACTS_WITH ITGB3 -COL1A2 IN_SAME_COMPONENT COL1A1 -COL1A2 IN_SAME_COMPONENT FIGF -COL1A2 IN_SAME_COMPONENT FLT4 -COL1A2 IN_SAME_COMPONENT ITGA1 -COL1A2 IN_SAME_COMPONENT ITGA11 -COL1A2 IN_SAME_COMPONENT ITGA2 -COL1A2 IN_SAME_COMPONENT ITGAV -COL1A2 IN_SAME_COMPONENT ITGB1 -COL1A2 IN_SAME_COMPONENT ITGB3 -COL1A2 REACTS_WITH COL1A1 -COL1A2 REACTS_WITH COL1A2 -COL1A2 REACTS_WITH FIGF -COL1A2 REACTS_WITH FLT4 -COL1A2 REACTS_WITH ITGA1 -COL1A2 REACTS_WITH ITGA11 -COL1A2 REACTS_WITH ITGA2 -COL1A2 REACTS_WITH ITGAV -COL1A2 REACTS_WITH ITGB1 -COL1A2 REACTS_WITH ITGB3 -COL2A1 IN_SAME_COMPONENT COL11A1 -COL2A1 IN_SAME_COMPONENT COL11A2 -COL2A1 IN_SAME_COMPONENT ITGA1 -COL2A1 IN_SAME_COMPONENT ITGA10 -COL2A1 IN_SAME_COMPONENT ITGA2 -COL2A1 IN_SAME_COMPONENT ITGB1 -COL2A1 REACTS_WITH COL11A1 -COL2A1 REACTS_WITH COL11A2 -COL2A1 REACTS_WITH COL2A1 -COL2A1 REACTS_WITH ITGA1 -COL2A1 REACTS_WITH ITGA10 -COL2A1 REACTS_WITH ITGA2 -COL2A1 REACTS_WITH ITGB1 -COL3A1 IN_SAME_COMPONENT ITGA2 -COL3A1 IN_SAME_COMPONENT ITGB1 -COL3A1 REACTS_WITH COL3A1 -COL3A1 REACTS_WITH ITGA2 -COL3A1 REACTS_WITH ITGB1 -COL4A3 IN_SAME_COMPONENT ITGAV -COL4A3 IN_SAME_COMPONENT ITGB3 -COL4A3 REACTS_WITH COL4A3 -COL4A3 REACTS_WITH ITGAV -COL4A3 REACTS_WITH ITGB3 -COL5A1 IN_SAME_COMPONENT COL5A2 -COL5A1 IN_SAME_COMPONENT ITGA1 -COL5A1 IN_SAME_COMPONENT ITGB1 -COL5A1 REACTS_WITH COL5A1 -COL5A1 REACTS_WITH COL5A2 -COL5A1 REACTS_WITH ITGA1 -COL5A1 REACTS_WITH ITGB1 -COL5A2 IN_SAME_COMPONENT COL5A1 -COL5A2 IN_SAME_COMPONENT ITGA1 -COL5A2 IN_SAME_COMPONENT ITGB1 -COL5A2 REACTS_WITH COL5A1 -COL5A2 REACTS_WITH COL5A2 -COL5A2 REACTS_WITH ITGA1 -COL5A2 REACTS_WITH ITGB1 -COL6A1 IN_SAME_COMPONENT COL6A2 -COL6A1 IN_SAME_COMPONENT ITGA1 -COL6A1 IN_SAME_COMPONENT ITGA2 -COL6A1 IN_SAME_COMPONENT ITGB1 -COL6A1 REACTS_WITH COL6A1 -COL6A1 REACTS_WITH COL6A2 -COL6A1 REACTS_WITH ITGA1 -COL6A1 REACTS_WITH ITGA2 -COL6A1 REACTS_WITH ITGB1 -COL6A2 IN_SAME_COMPONENT COL6A1 -COL6A2 IN_SAME_COMPONENT ITGA1 -COL6A2 IN_SAME_COMPONENT ITGA2 -COL6A2 IN_SAME_COMPONENT ITGB1 -COL6A2 REACTS_WITH COL6A1 -COL6A2 REACTS_WITH COL6A2 -COL6A2 REACTS_WITH ITGA1 -COL6A2 REACTS_WITH ITGA2 -COL6A2 REACTS_WITH ITGB1 -COL7A1 IN_SAME_COMPONENT ITGA2 -COL7A1 IN_SAME_COMPONENT ITGB1 -COL7A1 REACTS_WITH COL7A1 -COL7A1 REACTS_WITH ITGA2 -COL7A1 REACTS_WITH ITGB1 -COPA IN_SAME_COMPONENT ARFGAP1 -COPA IN_SAME_COMPONENT CD4 -COPA IN_SAME_COMPONENT CLTA -COPA IN_SAME_COMPONENT CLTB -COPA REACTS_WITH ARFGAP1 -COPA REACTS_WITH CD4 -COPA REACTS_WITH CLTA -COPA REACTS_WITH CLTB -COPA REACTS_WITH COPA -COPA REACTS_WITH GBF1 -COPA REACTS_WITH GOSR2 -COPA REACTS_WITH USO1 -COPS5 IN_SAME_COMPONENT HIF1A -COPS5 IN_SAME_COMPONENT JUN -COPS5 METABOLIC_CATALYSIS EPO -COPS5 METABOLIC_CATALYSIS MMP1 -COPS5 REACTS_WITH COPS5 -COPS5 REACTS_WITH HIF1A -COPS5 REACTS_WITH JUN -COPS5 REACTS_WITH TP53 -CPEB1 IN_SAME_COMPONENT AURKA -CPEB1 REACTS_WITH AURKA -CPEB1 REACTS_WITH CPEB1 -CRADD CO_CONTROL CTSD -CRADD CO_CONTROL NSMAF -CRADD CO_CONTROL TNF -CRADD CO_CONTROL TNFRSF1A -CRADD IN_SAME_COMPONENT BIRC3 -CRADD IN_SAME_COMPONENT CASP2 -CRADD IN_SAME_COMPONENT FADD -CRADD IN_SAME_COMPONENT LRDD -CRADD IN_SAME_COMPONENT MADD -CRADD IN_SAME_COMPONENT MAP3K5 -CRADD IN_SAME_COMPONENT RIPK1 -CRADD IN_SAME_COMPONENT TNF -CRADD IN_SAME_COMPONENT TNFRSF1A -CRADD IN_SAME_COMPONENT TRADD -CRADD IN_SAME_COMPONENT TRAF1 -CRADD IN_SAME_COMPONENT TRAF2 -CRADD REACTS_WITH BAG4 -CRADD REACTS_WITH BIRC3 -CRADD REACTS_WITH CASP2 -CRADD REACTS_WITH CRADD -CRADD REACTS_WITH FADD -CRADD REACTS_WITH MADD -CRADD REACTS_WITH MAP3K5 -CRADD REACTS_WITH RIPK1 -CRADD REACTS_WITH TNF -CRADD REACTS_WITH TNFRSF1A -CRADD REACTS_WITH TRADD -CRADD REACTS_WITH TRAF1 -CRADD REACTS_WITH TRAF2 -CRADD STATE_CHANGE BID -CRADD STATE_CHANGE CASP2 -CRADD STATE_CHANGE CASP8 -CRADD STATE_CHANGE FADD -CRADD STATE_CHANGE MAP2K7 -CRADD STATE_CHANGE MAP3K14 -CRADD STATE_CHANGE MAP4K4 -CRADD STATE_CHANGE SMPD1 -CRADD STATE_CHANGE SMPD3 -CREB1 CO_CONTROL ARNT -CREB1 CO_CONTROL CBFB -CREB1 CO_CONTROL ELK1 -CREB1 CO_CONTROL FOXA3 -CREB1 CO_CONTROL HIF1A -CREB1 CO_CONTROL HNF1A -CREB1 CO_CONTROL MAX -CREB1 CO_CONTROL MEF2C -CREB1 CO_CONTROL MYC -CREB1 CO_CONTROL SMAD4 -CREB1 CO_CONTROL SP1 -CREB1 CO_CONTROL SRF -CREB1 CO_CONTROL TBP -CREB1 CO_CONTROL ZBTB17 -CREB1 IN_SAME_COMPONENT ATF2 -CREB1 IN_SAME_COMPONENT JUN -CREB1 METABOLIC_CATALYSIS BCL2 -CREB1 METABOLIC_CATALYSIS CCND1 -CREB1 METABOLIC_CATALYSIS CEBPD -CREB1 METABOLIC_CATALYSIS CGA -CREB1 METABOLIC_CATALYSIS DUSP1 -CREB1 METABOLIC_CATALYSIS FOS -CREB1 METABOLIC_CATALYSIS G6PC -CREB1 METABOLIC_CATALYSIS IGHA1 -CREB1 METABOLIC_CATALYSIS LDHA -CREB1 METABOLIC_CATALYSIS NTF3 -CREB1 METABOLIC_CATALYSIS PCK1 -CREB1 REACTS_WITH ATF2 -CREB1 REACTS_WITH CREB1 -CREB1 REACTS_WITH JUN -CREBBP CO_CONTROL HES1 -CREBBP CO_CONTROL PARP1 -CREBBP CO_CONTROL TLE1 -CREBBP IN_SAME_COMPONENT AES -CREBBP IN_SAME_COMPONENT CDH2 -CREBBP IN_SAME_COMPONENT CTBP1 -CREBBP IN_SAME_COMPONENT CTNNB1 -CREBBP IN_SAME_COMPONENT HES1 -CREBBP IN_SAME_COMPONENT HNF1A -CREBBP IN_SAME_COMPONENT JUN -CREBBP IN_SAME_COMPONENT MYB -CREBBP IN_SAME_COMPONENT PARP1 -CREBBP IN_SAME_COMPONENT STAT4 -CREBBP IN_SAME_COMPONENT TLE1 -CREBBP METABOLIC_CATALYSIS ASCL1 -CREBBP METABOLIC_CATALYSIS BCL2 -CREBBP METABOLIC_CATALYSIS CCND1 -CREBBP METABOLIC_CATALYSIS EPOR -CREBBP METABOLIC_CATALYSIS GLI1 -CREBBP METABOLIC_CATALYSIS IL2RA -CREBBP METABOLIC_CATALYSIS KIT -CREBBP METABOLIC_CATALYSIS LECT2 -CREBBP METABOLIC_CATALYSIS MYC -CREBBP METABOLIC_CATALYSIS PPARD -CREBBP REACTS_WITH AES -CREBBP REACTS_WITH CDH2 -CREBBP REACTS_WITH CREBBP -CREBBP REACTS_WITH CTBP1 -CREBBP REACTS_WITH CTNNB1 -CREBBP REACTS_WITH HES1 -CREBBP REACTS_WITH HNF1A -CREBBP REACTS_WITH JUN -CREBBP REACTS_WITH MYB -CREBBP REACTS_WITH PARP1 -CREBBP REACTS_WITH STAT4 -CREBBP REACTS_WITH TLE1 -CREBBP STATE_CHANGE STAT1 -CREM CO_CONTROL FOS -CREM CO_CONTROL JUN -CREM METABOLIC_CATALYSIS IL2 -CREM REACTS_WITH CREM -CREM REACTS_WITH FOS -CREM REACTS_WITH JUN -CRK IN_SAME_COMPONENT BCAR1 -CRK IN_SAME_COMPONENT DOCK1 -CRK IN_SAME_COMPONENT DOK2 -CRK IN_SAME_COMPONENT EFNA5 -CRK IN_SAME_COMPONENT ELMO1 -CRK IN_SAME_COMPONENT EPHA3 -CRK IN_SAME_COMPONENT FLT4 -CRK IN_SAME_COMPONENT GAB1 -CRK IN_SAME_COMPONENT HGF -CRK IN_SAME_COMPONENT IRS1 -CRK IN_SAME_COMPONENT IRS2 -CRK IN_SAME_COMPONENT MET -CRK IN_SAME_COMPONENT PDGFRA -CRK IN_SAME_COMPONENT PTK2B -CRK IN_SAME_COMPONENT PXN -CRK IN_SAME_COMPONENT RAPGEF1 -CRK IN_SAME_COMPONENT SRC -CRK IN_SAME_COMPONENT TRIP6 -CRKL IN_SAME_COMPONENT CBL -CRKL IN_SAME_COMPONENT DAB1 -CRKL IN_SAME_COMPONENT GAB1 -CRKL IN_SAME_COMPONENT HGF -CRKL IN_SAME_COMPONENT MET -CRKL IN_SAME_COMPONENT PDGFRA -CRKL IN_SAME_COMPONENT RAPGEF1 -CRKL INTERACTS_WITH KIT -CRKL INTERACTS_WITH KITLG -CRKL REACTS_WITH CBL -CRKL REACTS_WITH CRKL -CRKL REACTS_WITH DAB1 -CRKL REACTS_WITH GAB1 -CRKL REACTS_WITH HGF -CRKL REACTS_WITH MET -CRKL REACTS_WITH PDGFRA -CRKL REACTS_WITH RAPGEF1 -CRKL STATE_CHANGE MAP4K1 -CRKL STATE_CHANGE RAP1A -CRKL STATE_CHANGE RAPGEF1 -CRK REACTS_WITH BCAR1 -CRK REACTS_WITH CRK -CRK REACTS_WITH DOCK1 -CRK REACTS_WITH DOK2 -CRK REACTS_WITH EFNA5 -CRK REACTS_WITH ELMO1 -CRK REACTS_WITH EPHA3 -CRK REACTS_WITH FLT4 -CRK REACTS_WITH GAB1 -CRK REACTS_WITH HGF -CRK REACTS_WITH IRS1 -CRK REACTS_WITH IRS2 -CRK REACTS_WITH MET -CRK REACTS_WITH PDGFRA -CRK REACTS_WITH PTK2 -CRK REACTS_WITH PTK2B -CRK REACTS_WITH PXN -CRK REACTS_WITH RAPGEF1 -CRK REACTS_WITH SRC -CRK REACTS_WITH TRIP6 -CRK STATE_CHANGE MAP2K4 -CRK STATE_CHANGE MAPK8 -CRK STATE_CHANGE RAC1 -CRK STATE_CHANGE RAPGEF1 -CRK STATE_CHANGE RHOA -CRTC1 IN_SAME_COMPONENT FOS -CRTC1 IN_SAME_COMPONENT JUN -CRTC1 METABOLIC_CATALYSIS MMP1 -CRTC1 REACTS_WITH CRTC1 -CRTC1 REACTS_WITH FOS -CRTC1 REACTS_WITH JUN -CRY2 IN_SAME_COMPONENT TIMELESS -CRY2 REACTS_WITH CRY2 -CRY2 REACTS_WITH TIMELESS -CSE1L CO_CONTROL TP53 -CSE1L METABOLIC_CATALYSIS RRM2B -CSE1L METABOLIC_CATALYSIS TP53AIP1 -CSE1L METABOLIC_CATALYSIS TP53I3 -CSF1 IN_SAME_COMPONENT CSF1R -CSF1 REACTS_WITH CSF1 -CSF1 REACTS_WITH CSF1R -CSF1R IN_SAME_COMPONENT BCAR1 -CSF1R IN_SAME_COMPONENT CBL -CSF1R IN_SAME_COMPONENT CSF1 -CSF1R IN_SAME_COMPONENT ITGAV -CSF1R IN_SAME_COMPONENT ITGB3 -CSF1R REACTS_WITH BCAR1 -CSF1R REACTS_WITH CBL -CSF1R REACTS_WITH CSF1 -CSF1R REACTS_WITH CSF1R -CSF1R REACTS_WITH ITGAV -CSF1R REACTS_WITH ITGB3 -CSF1R STATE_CHANGE VAV3 -CSF1 STATE_CHANGE BCAR1 -CSF1 STATE_CHANGE CBL -CSF1 STATE_CHANGE CSF1R -CSF1 STATE_CHANGE ITGAV -CSF1 STATE_CHANGE ITGB3 -CSF2 IN_SAME_COMPONENT CSF2RA -CSF2 IN_SAME_COMPONENT CSF2RB -CSF2 IN_SAME_COMPONENT GAB2 -CSF2 IN_SAME_COMPONENT IKBKB -CSF2 IN_SAME_COMPONENT INPP5D -CSF2 IN_SAME_COMPONENT ITGA9 -CSF2 IN_SAME_COMPONENT ITGB1 -CSF2 IN_SAME_COMPONENT JAK2 -CSF2 IN_SAME_COMPONENT LYN -CSF2 IN_SAME_COMPONENT PIK3CA -CSF2 IN_SAME_COMPONENT PIK3R1 -CSF2 IN_SAME_COMPONENT PTPN11 -CSF2 IN_SAME_COMPONENT SDC2 -CSF2 IN_SAME_COMPONENT SHC1 -CSF2 IN_SAME_COMPONENT SOS1 -CSF2 IN_SAME_COMPONENT SYK -CSF2 IN_SAME_COMPONENT YWHAZ -CSF2RA IN_SAME_COMPONENT CSF2 -CSF2RA IN_SAME_COMPONENT CSF2RB -CSF2RA IN_SAME_COMPONENT GAB2 -CSF2RA IN_SAME_COMPONENT IKBKB -CSF2RA IN_SAME_COMPONENT INPP5D -CSF2RA IN_SAME_COMPONENT ITGA9 -CSF2RA IN_SAME_COMPONENT ITGB1 -CSF2RA IN_SAME_COMPONENT JAK2 -CSF2RA IN_SAME_COMPONENT LYN -CSF2RA IN_SAME_COMPONENT PIK3CA -CSF2RA IN_SAME_COMPONENT PIK3R1 -CSF2RA IN_SAME_COMPONENT PTPN11 -CSF2RA IN_SAME_COMPONENT SHC1 -CSF2RA IN_SAME_COMPONENT SOS1 -CSF2RA IN_SAME_COMPONENT SYK -CSF2RA IN_SAME_COMPONENT YWHAZ -CSF2RA REACTS_WITH CSF2 -CSF2RA REACTS_WITH CSF2RA -CSF2RA REACTS_WITH CSF2RB -CSF2RA REACTS_WITH GAB2 -CSF2RA REACTS_WITH IKBKB -CSF2RA REACTS_WITH INPP5D -CSF2RA REACTS_WITH ITGA9 -CSF2RA REACTS_WITH ITGB1 -CSF2RA REACTS_WITH JAK2 -CSF2RA REACTS_WITH LYN -CSF2RA REACTS_WITH PIK3CA -CSF2RA REACTS_WITH PIK3R1 -CSF2RA REACTS_WITH PTPN11 -CSF2RA REACTS_WITH SHC1 -CSF2RA REACTS_WITH SOS1 -CSF2RA REACTS_WITH SYK -CSF2RA REACTS_WITH YWHAZ -CSF2RB IN_SAME_COMPONENT CSF2 -CSF2RB IN_SAME_COMPONENT CSF2RA -CSF2RB IN_SAME_COMPONENT GAB2 -CSF2RB IN_SAME_COMPONENT IKBKB -CSF2RB IN_SAME_COMPONENT IL3 -CSF2RB IN_SAME_COMPONENT IL3RA -CSF2RB IN_SAME_COMPONENT IL5 -CSF2RB IN_SAME_COMPONENT IL5RA -CSF2RB IN_SAME_COMPONENT INPP5D -CSF2RB IN_SAME_COMPONENT JAK2 -CSF2RB IN_SAME_COMPONENT LYN -CSF2RB IN_SAME_COMPONENT PIK3CA -CSF2RB IN_SAME_COMPONENT PIK3R1 -CSF2RB IN_SAME_COMPONENT PTPN11 -CSF2RB IN_SAME_COMPONENT SHC1 -CSF2RB IN_SAME_COMPONENT SOS1 -CSF2RB IN_SAME_COMPONENT SYK -CSF2RB IN_SAME_COMPONENT YWHAZ -CSF2RB REACTS_WITH CSF2 -CSF2RB REACTS_WITH CSF2RA -CSF2RB REACTS_WITH CSF2RB -CSF2RB REACTS_WITH GAB2 -CSF2RB REACTS_WITH IKBKB -CSF2RB REACTS_WITH IL3 -CSF2RB REACTS_WITH IL3RA -CSF2RB REACTS_WITH IL5 -CSF2RB REACTS_WITH IL5RA -CSF2RB REACTS_WITH INPP5D -CSF2RB REACTS_WITH JAK2 -CSF2RB REACTS_WITH LYN -CSF2RB REACTS_WITH PIK3CA -CSF2RB REACTS_WITH PIK3R1 -CSF2RB REACTS_WITH PTPN11 -CSF2RB REACTS_WITH SHC1 -CSF2RB REACTS_WITH SOS1 -CSF2RB REACTS_WITH SYK -CSF2RB REACTS_WITH YWHAZ -CSF2RB STATE_CHANGE PIK3CA -CSF2RB STATE_CHANGE PIK3R1 -CSF2 REACTS_WITH CSF2 -CSF2 REACTS_WITH CSF2RA -CSF2 REACTS_WITH CSF2RB -CSF2 REACTS_WITH GAB2 -CSF2 REACTS_WITH IKBKB -CSF2 REACTS_WITH INPP5D -CSF2 REACTS_WITH ITGA9 -CSF2 REACTS_WITH ITGB1 -CSF2 REACTS_WITH JAK2 -CSF2 REACTS_WITH LYN -CSF2 REACTS_WITH PIK3CA -CSF2 REACTS_WITH PIK3R1 -CSF2 REACTS_WITH PTPN11 -CSF2 REACTS_WITH SDC2 -CSF2 REACTS_WITH SHC1 -CSF2 REACTS_WITH SOS1 -CSF2 REACTS_WITH SYK -CSF2 REACTS_WITH YWHAZ -CSK CO_CONTROL PTPRC -CSK IN_SAME_COMPONENT PAG1 -CSK IN_SAME_COMPONENT RASA1 -CSK REACTS_WITH CSK -CSK REACTS_WITH PAG1 -CSK REACTS_WITH RASA1 -CSK STATE_CHANGE CD79A -CSK STATE_CHANGE CD79B -CSK STATE_CHANGE FYN -CSK STATE_CHANGE LCK -CSK STATE_CHANGE LYN -CSK STATE_CHANGE SRC -CSNK1A1 CO_CONTROL GSK3B -CSNK1A1 CO_CONTROL MAPK14 -CSNK1A1 CO_CONTROL PRKACA -CSNK1A1 IN_SAME_COMPONENT NFATC2 -CSNK1A1 IN_SAME_COMPONENT NFATC3 -CSNK1A1 REACTS_WITH CSNK1A1 -CSNK1A1 REACTS_WITH NFATC2 -CSNK1A1 REACTS_WITH NFATC3 -CSNK1A1 STATE_CHANGE DVL1 -CSNK1A1 STATE_CHANGE NFATC2 -CSNK1E REACTS_WITH CSNK1E -CSNK1G1 STATE_CHANGE AXIN1 -CSNK1G1 STATE_CHANGE FZD5 -CSNK1G1 STATE_CHANGE LRP6 -CSNK1G1 STATE_CHANGE WNT3A -CSNK2A1 CO_CONTROL MAPK3 -CSNK2A1 CO_CONTROL MAPK8 -CSNK2A1 STATE_CHANGE DVL1 -CSNK2A1 STATE_CHANGE JUN -CSNK2A1 STATE_CHANGE MAP1B -CSNK2A1 STATE_CHANGE NFATC1 -CSNK2A1 STATE_CHANGE PAFAH1B1 -CSNK2A1 STATE_CHANGE SNCA -CSNK2A1 STATE_CHANGE SRF -CSNK2B IN_SAME_COMPONENT ACVRL1 -CSNK2B IN_SAME_COMPONENT BMPR2 -CSNK2B IN_SAME_COMPONENT FKBP1A -CSNK2B IN_SAME_COMPONENT GDF2 -CSNK2B IN_SAME_COMPONENT TGFB1 -CSNK2B IN_SAME_COMPONENT TGFBR1 -CSNK2B IN_SAME_COMPONENT TGFBR2 -CSNK2B REACTS_WITH ACVRL1 -CSNK2B REACTS_WITH BMPR2 -CSNK2B REACTS_WITH CSNK2B -CSNK2B REACTS_WITH FKBP1A -CSNK2B REACTS_WITH GDF2 -CSNK2B REACTS_WITH TGFB1 -CSNK2B REACTS_WITH TGFBR1 -CSNK2B REACTS_WITH TGFBR2 -CSPG4 IN_SAME_COMPONENT ITGA3 -CSPG4 IN_SAME_COMPONENT ITGA4 -CSPG4 IN_SAME_COMPONENT ITGB1 -CSPG4 REACTS_WITH CSPG4 -CSPG4 REACTS_WITH ITGA3 -CSPG4 REACTS_WITH ITGA4 -CSPG4 REACTS_WITH ITGB1 -CSTF1 IN_SAME_COMPONENT BARD1 -CSTF1 IN_SAME_COMPONENT BRCA1 -CSTF1 REACTS_WITH BARD1 -CSTF1 REACTS_WITH BRCA1 -CSTF1 REACTS_WITH CSTF1 -CTBP1 CO_CONTROL CITED1 -CTBP1 CO_CONTROL NOTCH1 -CTBP1 CO_CONTROL RBPJ -CTBP1 IN_SAME_COMPONENT AES -CTBP1 IN_SAME_COMPONENT APC -CTBP1 IN_SAME_COMPONENT BRCA1 -CTBP1 IN_SAME_COMPONENT CBX4 -CTBP1 IN_SAME_COMPONENT CREBBP -CTBP1 IN_SAME_COMPONENT CTNNB1 -CTBP1 IN_SAME_COMPONENT E2F4 -CTBP1 IN_SAME_COMPONENT HDAC1 -CTBP1 IN_SAME_COMPONENT HDAC2 -CTBP1 IN_SAME_COMPONENT HNF1A -CTBP1 IN_SAME_COMPONENT KDM1A -CTBP1 IN_SAME_COMPONENT RB1 -CTBP1 IN_SAME_COMPONENT RBBP4 -CTBP1 IN_SAME_COMPONENT RBBP7 -CTBP1 IN_SAME_COMPONENT RBBP8 -CTBP1 IN_SAME_COMPONENT RBPJ -CTBP1 IN_SAME_COMPONENT SAP18 -CTBP1 IN_SAME_COMPONENT SAP30 -CTBP1 IN_SAME_COMPONENT SIN3A -CTBP1 IN_SAME_COMPONENT SIN3B -CTBP1 IN_SAME_COMPONENT SPEN -CTBP1 IN_SAME_COMPONENT TFDP1 -CTBP1 IN_SAME_COMPONENT TGIF1 -CTBP1 IN_SAME_COMPONENT TLE1 -CTBP1 METABOLIC_CATALYSIS CCND1 -CTBP1 METABOLIC_CATALYSIS HEY1 -CTBP1 METABOLIC_CATALYSIS MYC -CTBP1 METABOLIC_CATALYSIS PPARD -CTBP1 REACTS_WITH AES -CTBP1 REACTS_WITH APC -CTBP1 REACTS_WITH ATM -CTBP1 REACTS_WITH BRCA1 -CTBP1 REACTS_WITH CBX4 -CTBP1 REACTS_WITH CREBBP -CTBP1 REACTS_WITH CTBP1 -CTBP1 REACTS_WITH CTNNB1 -CTBP1 REACTS_WITH E2F4 -CTBP1 REACTS_WITH H2AFX -CTBP1 REACTS_WITH HNF1A -CTBP1 REACTS_WITH KDM1A -CTBP1 REACTS_WITH MDC1 -CTBP1 REACTS_WITH MRE11A -CTBP1 REACTS_WITH NBN -CTBP1 REACTS_WITH NOTCH1 -CTBP1 REACTS_WITH RAD50 -CTBP1 REACTS_WITH RB1 -CTBP1 REACTS_WITH RBBP8 -CTBP1 REACTS_WITH RBPJ -CTBP1 REACTS_WITH RNF8 -CTBP1 REACTS_WITH SPEN -CTBP1 REACTS_WITH TFDP1 -CTBP1 REACTS_WITH TLE1 -CTBP1 REACTS_WITH TP53BP1 -CTBP1 STATE_CHANGE SMAD2 -CTBP1 STATE_CHANGE SMAD4 -CTDSP1 CO_CONTROL AR -CTDSP1 METABOLIC_CATALYSIS KLK3 -CTDSP2 CO_CONTROL AR -CTDSP2 METABOLIC_CATALYSIS KLK3 -CTGF IN_SAME_COMPONENT ITGAM -CTGF IN_SAME_COMPONENT ITGB2 -CTGF REACTS_WITH CTGF -CTGF REACTS_WITH ITGAM -CTGF REACTS_WITH ITGB2 -CTGF STATE_CHANGE TGFBR2 -CTGF STATE_CHANGE TGFBR3 -CTHRC1 IN_SAME_COMPONENT ROR2 -CTHRC1 REACTS_WITH CTHRC1 -CTHRC1 REACTS_WITH ROR2 -CTNNA1 CO_CONTROL PVRL2 -CTNNA1 IN_SAME_COMPONENT AXIN1 -CTNNA1 IN_SAME_COMPONENT CDH1 -CTNNA1 IN_SAME_COMPONENT CDH2 -CTNNA1 IN_SAME_COMPONENT CDH5 -CTNNA1 IN_SAME_COMPONENT CTNNB1 -CTNNA1 IN_SAME_COMPONENT CTNND1 -CTNNA1 IN_SAME_COMPONENT F2RL2 -CTNNA1 IN_SAME_COMPONENT FER -CTNNA1 IN_SAME_COMPONENT IQGAP1 -CTNNA1 IN_SAME_COMPONENT ITGAE -CTNNA1 IN_SAME_COMPONENT ITGB7 -CTNNA1 IN_SAME_COMPONENT JUP -CTNNA1 IN_SAME_COMPONENT KDR -CTNNA1 IN_SAME_COMPONENT LIMA1 -CTNNA1 IN_SAME_COMPONENT LRP5 -CTNNA1 IN_SAME_COMPONENT NUMB -CTNNA1 IN_SAME_COMPONENT PARD6A -CTNNA1 IN_SAME_COMPONENT VEGFA -CTNNA1 REACTS_WITH AXIN1 -CTNNA1 REACTS_WITH CDH1 -CTNNA1 REACTS_WITH CDH2 -CTNNA1 REACTS_WITH CDH5 -CTNNA1 REACTS_WITH CTNNA1 -CTNNA1 REACTS_WITH CTNNB1 -CTNNA1 REACTS_WITH CTNND1 -CTNNA1 REACTS_WITH F2RL2 -CTNNA1 REACTS_WITH IGF1R -CTNNA1 REACTS_WITH IGF2 -CTNNA1 REACTS_WITH IQGAP1 -CTNNA1 REACTS_WITH ITGAE -CTNNA1 REACTS_WITH ITGB7 -CTNNA1 REACTS_WITH JUP -CTNNA1 REACTS_WITH KDR -CTNNA1 REACTS_WITH LIMA1 -CTNNA1 REACTS_WITH LRP5 -CTNNA1 REACTS_WITH MET -CTNNA1 REACTS_WITH NUMB -CTNNA1 REACTS_WITH PARD6A -CTNNA1 REACTS_WITH RHOA -CTNNA1 REACTS_WITH VEGFA -CTNNA1 STATE_CHANGE ACTN1 -CTNNA1 STATE_CHANGE CDH2 -CTNNA1 STATE_CHANGE CTNNA1 -CTNNA1 STATE_CHANGE CTNND1 -CTNNA1 STATE_CHANGE CTTN -CTNNA1 STATE_CHANGE DLG1 -CTNNA1 STATE_CHANGE EFNA1 -CTNNA1 STATE_CHANGE EGF -CTNNA1 STATE_CHANGE EGFR -CTNNA1 STATE_CHANGE ENAH -CTNNA1 STATE_CHANGE EPHA2 -CTNNA1 STATE_CHANGE EXOC3 -CTNNA1 STATE_CHANGE EXOC4 -CTNNA1 STATE_CHANGE FER -CTNNA1 STATE_CHANGE FGFR1 -CTNNA1 STATE_CHANGE FMN1 -CTNNA1 STATE_CHANGE GJA1 -CTNNA1 STATE_CHANGE GRIA2 -CTNNA1 STATE_CHANGE HGF -CTNNA1 STATE_CHANGE IGF1 -CTNNA1 STATE_CHANGE IGF1R -CTNNA1 STATE_CHANGE JUB -CTNNA1 STATE_CHANGE KIFC3 -CTNNA1 STATE_CHANGE MET -CTNNA1 STATE_CHANGE MGAT3 -CTNNA1 STATE_CHANGE MYO6 -CTNNA1 STATE_CHANGE PIK3CA -CTNNA1 STATE_CHANGE PIK3R1 -CTNNA1 STATE_CHANGE PIP5K1A -CTNNA1 STATE_CHANGE PIP5K1C -CTNNA1 STATE_CHANGE PLEKHA7 -CTNNA1 STATE_CHANGE PTPN11 -CTNNA1 STATE_CHANGE PTPRJ -CTNNA1 STATE_CHANGE RAC1 -CTNNA1 STATE_CHANGE RHOA -CTNNA1 STATE_CHANGE SRC -CTNNA1 STATE_CHANGE STX4 -CTNNA1 STATE_CHANGE TJP1 -CTNNA1 STATE_CHANGE VASP -CTNNA1 STATE_CHANGE VCL -CTNNA1 STATE_CHANGE ZYX -CTNNB1 CO_CONTROL AR -CTNNB1 CO_CONTROL PVRL2 -CTNNB1 IN_SAME_COMPONENT ADCY7 -CTNNB1 IN_SAME_COMPONENT AES -CTNNB1 IN_SAME_COMPONENT APC -CTNNB1 IN_SAME_COMPONENT AR -CTNNB1 IN_SAME_COMPONENT AXIN1 -CTNNB1 IN_SAME_COMPONENT AXIN2 -CTNNB1 IN_SAME_COMPONENT BCL9 -CTNNB1 IN_SAME_COMPONENT BTRC -CTNNB1 IN_SAME_COMPONENT CBY1 -CTNNB1 IN_SAME_COMPONENT CDH1 -CTNNB1 IN_SAME_COMPONENT CDH2 -CTNNB1 IN_SAME_COMPONENT CDH5 -CTNNB1 IN_SAME_COMPONENT CDX1 -CTNNB1 IN_SAME_COMPONENT CHD8 -CTNNB1 IN_SAME_COMPONENT CREBBP -CTNNB1 IN_SAME_COMPONENT CTBP1 -CTNNB1 IN_SAME_COMPONENT CTNNA1 -CTNNB1 IN_SAME_COMPONENT CTNNBIP1 -CTNNB1 IN_SAME_COMPONENT CTNND1 -CTNNB1 IN_SAME_COMPONENT CUL1 -CTNNB1 IN_SAME_COMPONENT DVL3 -CTNNB1 IN_SAME_COMPONENT EP300 -CTNNB1 IN_SAME_COMPONENT F2RL2 -CTNNB1 IN_SAME_COMPONENT FBXW11 -CTNNB1 IN_SAME_COMPONENT FER -CTNNB1 IN_SAME_COMPONENT FOS -CTNNB1 IN_SAME_COMPONENT HBP1 -CTNNB1 IN_SAME_COMPONENT HNF1A -CTNNB1 IN_SAME_COMPONENT IQGAP1 -CTNNB1 IN_SAME_COMPONENT ITGAE -CTNNB1 IN_SAME_COMPONENT ITGB7 -CTNNB1 IN_SAME_COMPONENT JUN -CTNNB1 IN_SAME_COMPONENT KDR -CTNNB1 IN_SAME_COMPONENT KLF4 -CTNNB1 IN_SAME_COMPONENT LEF1 -CTNNB1 IN_SAME_COMPONENT LIMA1 -CTNNB1 IN_SAME_COMPONENT LRP5 -CTNNB1 IN_SAME_COMPONENT MDFIC -CTNNB1 IN_SAME_COMPONENT MED12 -CTNNB1 IN_SAME_COMPONENT MET -CTNNB1 IN_SAME_COMPONENT MYOG -CTNNB1 IN_SAME_COMPONENT NCOA2 -CTNNB1 IN_SAME_COMPONENT NUMB -CTNNB1 IN_SAME_COMPONENT PARD6A -CTNNB1 IN_SAME_COMPONENT PITX2 -CTNNB1 IN_SAME_COMPONENT RUVBL2 -CTNNB1 IN_SAME_COMPONENT SKP1 -CTNNB1 IN_SAME_COMPONENT TBL1X -CTNNB1 IN_SAME_COMPONENT TBL1XR1 -CTNNB1 IN_SAME_COMPONENT TCF4 -CTNNB1 IN_SAME_COMPONENT TCF7 -CTNNB1 IN_SAME_COMPONENT TCF7L1 -CTNNB1 IN_SAME_COMPONENT TCF7L2 -CTNNB1 IN_SAME_COMPONENT TLE1 -CTNNB1 IN_SAME_COMPONENT TNIK -CTNNB1 IN_SAME_COMPONENT TRRAP -CTNNB1 IN_SAME_COMPONENT VEGFA -CTNNB1 METABOLIC_CATALYSIS AXIN2 -CTNNB1 METABOLIC_CATALYSIS CACNA1G -CTNNB1 METABOLIC_CATALYSIS CAMK4 -CTNNB1 METABOLIC_CATALYSIS CCND1 -CTNNB1 METABOLIC_CATALYSIS CCND2 -CTNNB1 METABOLIC_CATALYSIS CDH1 -CTNNB1 METABOLIC_CATALYSIS CDKN1B -CTNNB1 METABOLIC_CATALYSIS CDX1 -CTNNB1 METABOLIC_CATALYSIS CDX4 -CTNNB1 METABOLIC_CATALYSIS CYR61 -CTNNB1 METABOLIC_CATALYSIS DKK1 -CTNNB1 METABOLIC_CATALYSIS DKK4 -CTNNB1 METABOLIC_CATALYSIS FGF4 -CTNNB1 METABOLIC_CATALYSIS ID2 -CTNNB1 METABOLIC_CATALYSIS IGF2BP1 -CTNNB1 METABOLIC_CATALYSIS IL8 -CTNNB1 METABOLIC_CATALYSIS INCENP -CTNNB1 METABOLIC_CATALYSIS KCNIP4 -CTNNB1 METABOLIC_CATALYSIS KLK3 -CTNNB1 METABOLIC_CATALYSIS KRT1 -CTNNB1 METABOLIC_CATALYSIS LEF1 -CTNNB1 METABOLIC_CATALYSIS MITF -CTNNB1 METABOLIC_CATALYSIS MMP2 -CTNNB1 METABOLIC_CATALYSIS MMP9 -CTNNB1 METABOLIC_CATALYSIS MT-CO2 -CTNNB1 METABOLIC_CATALYSIS MYC -CTNNB1 METABOLIC_CATALYSIS NEUROG1 -CTNNB1 METABOLIC_CATALYSIS PITX2 -CTNNB1 METABOLIC_CATALYSIS PPARD -CTNNB1 METABOLIC_CATALYSIS SALL4 -CTNNB1 METABOLIC_CATALYSIS SNAI2 -CTNNB1 METABOLIC_CATALYSIS SP5 -CTNNB1 METABOLIC_CATALYSIS T -CTNNB1 METABOLIC_CATALYSIS TCF7 -CTNNB1 METABOLIC_CATALYSIS VCAN -CTNNB1 METABOLIC_CATALYSIS ZCCHC12 -CTNNB1 REACTS_WITH ADCY7 -CTNNB1 REACTS_WITH AES -CTNNB1 REACTS_WITH APC -CTNNB1 REACTS_WITH AR -CTNNB1 REACTS_WITH AXIN1 -CTNNB1 REACTS_WITH AXIN2 -CTNNB1 REACTS_WITH BCL9 -CTNNB1 REACTS_WITH BTRC -CTNNB1 REACTS_WITH CBY1 -CTNNB1 REACTS_WITH CDH1 -CTNNB1 REACTS_WITH CDH2 -CTNNB1 REACTS_WITH CDH5 -CTNNB1 REACTS_WITH CDX1 -CTNNB1 REACTS_WITH CHD8 -CTNNB1 REACTS_WITH CREBBP -CTNNB1 REACTS_WITH CTBP1 -CTNNB1 REACTS_WITH CTNNA1 -CTNNB1 REACTS_WITH CTNNB1 -CTNNB1 REACTS_WITH CTNNBIP1 -CTNNB1 REACTS_WITH CTNND1 -CTNNB1 REACTS_WITH CUL1 -CTNNB1 REACTS_WITH DVL3 -CTNNB1 REACTS_WITH EP300 -CTNNB1 REACTS_WITH F2RL2 -CTNNB1 REACTS_WITH FBXW11 -CTNNB1 REACTS_WITH FOS -CTNNB1 REACTS_WITH FZD5 -CTNNB1 REACTS_WITH HBP1 -CTNNB1 REACTS_WITH HDAC1 -CTNNB1 REACTS_WITH HGF -CTNNB1 REACTS_WITH HNF1A -CTNNB1 REACTS_WITH IGF1R -CTNNB1 REACTS_WITH IGF2 -CTNNB1 REACTS_WITH IQGAP1 -CTNNB1 REACTS_WITH ITGAE -CTNNB1 REACTS_WITH ITGB7 -CTNNB1 REACTS_WITH JUN -CTNNB1 REACTS_WITH KDR -CTNNB1 REACTS_WITH KLF4 -CTNNB1 REACTS_WITH LEF1 -CTNNB1 REACTS_WITH LIMA1 -CTNNB1 REACTS_WITH LRP5 -CTNNB1 REACTS_WITH LRP6 -CTNNB1 REACTS_WITH MDFIC -CTNNB1 REACTS_WITH MED12 -CTNNB1 REACTS_WITH MET -CTNNB1 REACTS_WITH MYF5 -CTNNB1 REACTS_WITH MYOG -CTNNB1 REACTS_WITH NCOA2 -CTNNB1 REACTS_WITH NUMB -CTNNB1 REACTS_WITH PARD6A -CTNNB1 REACTS_WITH PITX2 -CTNNB1 REACTS_WITH RHOA -CTNNB1 REACTS_WITH RUVBL2 -CTNNB1 REACTS_WITH SKP1 -CTNNB1 REACTS_WITH SMARCA4 -CTNNB1 REACTS_WITH TBL1X -CTNNB1 REACTS_WITH TBL1XR1 -CTNNB1 REACTS_WITH TCF4 -CTNNB1 REACTS_WITH TCF7 -CTNNB1 REACTS_WITH TCF7L1 -CTNNB1 REACTS_WITH TCF7L2 -CTNNB1 REACTS_WITH TERT -CTNNB1 REACTS_WITH TLE1 -CTNNB1 REACTS_WITH TLE2 -CTNNB1 REACTS_WITH TLE4 -CTNNB1 REACTS_WITH TNIK -CTNNB1 REACTS_WITH TRRAP -CTNNB1 REACTS_WITH VEGFA -CTNNB1 REACTS_WITH WNT3A -CTNNB1 STATE_CHANGE ACTN1 -CTNNB1 STATE_CHANGE CTNNB1 -CTNNB1 STATE_CHANGE CTTN -CTNNB1 STATE_CHANGE DLG1 -CTNNB1 STATE_CHANGE EFNA1 -CTNNB1 STATE_CHANGE EGF -CTNNB1 STATE_CHANGE EGFR -CTNNB1 STATE_CHANGE ENAH -CTNNB1 STATE_CHANGE EP300 -CTNNB1 STATE_CHANGE EPHA2 -CTNNB1 STATE_CHANGE EXOC3 -CTNNB1 STATE_CHANGE EXOC4 -CTNNB1 STATE_CHANGE HGF -CTNNB1 STATE_CHANGE IGF1 -CTNNB1 STATE_CHANGE IGF1R -CTNNB1 STATE_CHANGE KIFC3 -CTNNB1 STATE_CHANGE MET -CTNNB1 STATE_CHANGE MGAT3 -CTNNB1 STATE_CHANGE MYO6 -CTNNB1 STATE_CHANGE PIP5K1C -CTNNB1 STATE_CHANGE PLEKHA7 -CTNNB1 STATE_CHANGE PTPN11 -CTNNB1 STATE_CHANGE PTPRJ -CTNNB1 STATE_CHANGE RHOA -CTNNB1 STATE_CHANGE SRC -CTNNB1 STATE_CHANGE STX4 -CTNNB1 STATE_CHANGE TCF7L2 -CTNNB1 STATE_CHANGE TJP1 -CTNNB1 STATE_CHANGE VCL -CTNNB1 STATE_CHANGE ZYX -CTNNBIP1 IN_SAME_COMPONENT CTNNB1 -CTNNBIP1 REACTS_WITH CTNNB1 -CTNNBIP1 REACTS_WITH CTNNBIP1 -CTNND1 CO_CONTROL PVRL2 -CTNND1 CO_CONTROL ZBTB33 -CTNND1 IN_SAME_COMPONENT AXIN1 -CTNND1 IN_SAME_COMPONENT CDH1 -CTNND1 IN_SAME_COMPONENT CDH2 -CTNND1 IN_SAME_COMPONENT CTNNA1 -CTNND1 IN_SAME_COMPONENT CTNNB1 -CTNND1 IN_SAME_COMPONENT FER -CTNND1 IN_SAME_COMPONENT JUP -CTNND1 IN_SAME_COMPONENT LIMA1 -CTNND1 IN_SAME_COMPONENT LRP5 -CTNND1 IN_SAME_COMPONENT RHOA -CTNND1 IN_SAME_COMPONENT ZBTB33 -CTNND1 METABOLIC_CATALYSIS MMP7 -CTNND1 REACTS_WITH AXIN1 -CTNND1 REACTS_WITH CDH1 -CTNND1 REACTS_WITH CDH2 -CTNND1 REACTS_WITH CTNNA1 -CTNND1 REACTS_WITH CTNNB1 -CTNND1 REACTS_WITH CTNND1 -CTNND1 REACTS_WITH IGF1R -CTNND1 REACTS_WITH IGF2 -CTNND1 REACTS_WITH IQGAP1 -CTNND1 REACTS_WITH JUP -CTNND1 REACTS_WITH LIMA1 -CTNND1 REACTS_WITH LRP5 -CTNND1 REACTS_WITH RHOA -CTNND1 REACTS_WITH ZBTB33 -CTNND1 STATE_CHANGE ACTN1 -CTNND1 STATE_CHANGE CDH1 -CTNND1 STATE_CHANGE CDH2 -CTNND1 STATE_CHANGE CTNNA1 -CTNND1 STATE_CHANGE CTNND1 -CTNND1 STATE_CHANGE CTTN -CTNND1 STATE_CHANGE DLG1 -CTNND1 STATE_CHANGE EFNA1 -CTNND1 STATE_CHANGE EGF -CTNND1 STATE_CHANGE EGFR -CTNND1 STATE_CHANGE ENAH -CTNND1 STATE_CHANGE EPHA2 -CTNND1 STATE_CHANGE EXOC3 -CTNND1 STATE_CHANGE EXOC4 -CTNND1 STATE_CHANGE FER -CTNND1 STATE_CHANGE FGFR1 -CTNND1 STATE_CHANGE FMN1 -CTNND1 STATE_CHANGE GJA1 -CTNND1 STATE_CHANGE GRIA2 -CTNND1 STATE_CHANGE HGF -CTNND1 STATE_CHANGE IGF1 -CTNND1 STATE_CHANGE IGF1R -CTNND1 STATE_CHANGE JUB -CTNND1 STATE_CHANGE KIFC3 -CTNND1 STATE_CHANGE MET -CTNND1 STATE_CHANGE MGAT3 -CTNND1 STATE_CHANGE MYO6 -CTNND1 STATE_CHANGE PIK3CA -CTNND1 STATE_CHANGE PIK3R1 -CTNND1 STATE_CHANGE PIP5K1A -CTNND1 STATE_CHANGE PIP5K1C -CTNND1 STATE_CHANGE PLEKHA7 -CTNND1 STATE_CHANGE PTPN11 -CTNND1 STATE_CHANGE RAC1 -CTNND1 STATE_CHANGE RHOA -CTNND1 STATE_CHANGE SRC -CTNND1 STATE_CHANGE STX4 -CTNND1 STATE_CHANGE TJP1 -CTNND1 STATE_CHANGE VASP -CTNND1 STATE_CHANGE VCL -CTNND1 STATE_CHANGE ZYX -CTRC STATE_CHANGE PLAUR -CTSD CO_CONTROL BIRC3 -CTSD CO_CONTROL CRADD -CTSD CO_CONTROL MADD -CTSD CO_CONTROL RIPK1 -CTSD CO_CONTROL TNF -CTSD CO_CONTROL TNFRSF1A -CTSD CO_CONTROL TRADD -CTSD CO_CONTROL TRAF2 -CTSD REACTS_WITH CTSD -CTSD STATE_CHANGE BID -CTSG STATE_CHANGE PLAUR -CTTN IN_SAME_COMPONENT FYN -CTTN IN_SAME_COMPONENT SDC3 -CTTN IN_SAME_COMPONENT SRC -CTTN REACTS_WITH CTTN -CTTN REACTS_WITH FYN -CTTN REACTS_WITH SDC3 -CTTN REACTS_WITH SRC -CUL1 IN_SAME_COMPONENT BTRC -CUL1 IN_SAME_COMPONENT CTNNB1 -CUL1 IN_SAME_COMPONENT FBXW7 -CUL1 IN_SAME_COMPONENT SKP1 -CUL1 IN_SAME_COMPONENT TCF7L2 -CUL1 IN_SAME_COMPONENT TRRAP -CUL1 REACTS_WITH BTRC -CUL1 REACTS_WITH CTNNB1 -CUL1 REACTS_WITH CUL1 -CUL1 REACTS_WITH SKP1 -CUL1 REACTS_WITH TCF7L2 -CUL1 REACTS_WITH TRRAP -CUL1 STATE_CHANGE APC -CUL1 STATE_CHANGE CTNNB1 -CUL2 IN_SAME_COMPONENT HIF1A -CUL2 IN_SAME_COMPONENT RBX1 -CUL2 IN_SAME_COMPONENT TCEB1 -CUL2 IN_SAME_COMPONENT TCEB2 -CUL2 IN_SAME_COMPONENT VHL -CUL2 REACTS_WITH CUL2 -CUL2 REACTS_WITH HIF1A -CUL2 REACTS_WITH RBX1 -CUL2 REACTS_WITH TCEB1 -CUL2 REACTS_WITH TCEB2 -CUL2 REACTS_WITH VHL -CUL3 CO_CONTROL ATF2 -CUL3 IN_SAME_COMPONENT AURKB -CUL3 IN_SAME_COMPONENT BIRC5 -CUL3 IN_SAME_COMPONENT CDCA8 -CUL3 IN_SAME_COMPONENT INCENP -CUL3 IN_SAME_COMPONENT KLHL12 -CUL3 IN_SAME_COMPONENT KLHL13 -CUL3 IN_SAME_COMPONENT KLHL9 -CUL3 REACTS_WITH AURKB -CUL3 REACTS_WITH BIRC5 -CUL3 REACTS_WITH CDCA8 -CUL3 REACTS_WITH CUL3 -CUL3 REACTS_WITH INCENP -CUL3 REACTS_WITH KLHL12 -CUL3 REACTS_WITH KLHL13 -CUL3 REACTS_WITH KLHL9 -CUL3 REACTS_WITH PSMA3 -CUL3 STATE_CHANGE KAT5 -CXCL10 IN_SAME_COMPONENT CXCR3 -CXCL10 REACTS_WITH CCL11 -CXCL10 REACTS_WITH CXCL10 -CXCL10 REACTS_WITH CXCL13 -CXCL10 REACTS_WITH CXCR3 -CXCL10 REACTS_WITH GNAI2 -CXCL10 REACTS_WITH GNG2 -CXCL11 IN_SAME_COMPONENT CXCR3 -CXCL11 REACTS_WITH CXCL11 -CXCL11 REACTS_WITH CXCR3 -CXCL11 REACTS_WITH GNAI2 -CXCL11 REACTS_WITH GNG2 -CXCL12 IN_SAME_COMPONENT CXCR4 -CXCL12 IN_SAME_COMPONENT JAK2 -CXCL12 IN_SAME_COMPONENT PTPRC -CXCL12 IN_SAME_COMPONENT SDC4 -CXCL12 IN_SAME_COMPONENT VAV1 -CXCL12 REACTS_WITH CXCL12 -CXCL12 REACTS_WITH CXCR4 -CXCL12 REACTS_WITH JAK2 -CXCL12 REACTS_WITH PTPRC -CXCL12 REACTS_WITH SDC4 -CXCL12 REACTS_WITH VAV1 -CXCL12 STATE_CHANGE BCAR1 -CXCL12 STATE_CHANGE GNA13 -CXCL12 STATE_CHANGE GNG2 -CXCL12 STATE_CHANGE LCK -CXCL12 STATE_CHANGE PXN -CXCL12 STATE_CHANGE RALB -CXCL12 STATE_CHANGE SSH1 -CXCL12 STATE_CHANGE STAT2 -CXCL13 IN_SAME_COMPONENT CXCR3 -CXCL13 REACTS_WITH CXCL10 -CXCL13 REACTS_WITH CXCL13 -CXCL13 REACTS_WITH CXCR3 -CXCL13 REACTS_WITH GNAI2 -CXCL13 REACTS_WITH GNG2 -CXCL9 IN_SAME_COMPONENT CXCR3 -CXCL9 REACTS_WITH CXCL9 -CXCL9 REACTS_WITH CXCR3 -CXCL9 REACTS_WITH GNAI2 -CXCL9 REACTS_WITH GNG2 -CXCR1 IN_SAME_COMPONENT IL8 -CXCR1 REACTS_WITH CXCR1 -CXCR1 REACTS_WITH GNA14 -CXCR1 REACTS_WITH GNA15 -CXCR1 REACTS_WITH GNAI2 -CXCR1 REACTS_WITH GNG2 -CXCR1 REACTS_WITH IL8 -CXCR2 IN_SAME_COMPONENT IL8 -CXCR2 IN_SAME_COMPONENT VASP -CXCR2 REACTS_WITH CXCR2 -CXCR2 REACTS_WITH GNA14 -CXCR2 REACTS_WITH GNA15 -CXCR2 REACTS_WITH GNAI2 -CXCR2 REACTS_WITH GNG2 -CXCR2 REACTS_WITH IL8 -CXCR2 REACTS_WITH VASP -CXCR3 IN_SAME_COMPONENT CCL11 -CXCR3 IN_SAME_COMPONENT CXCL10 -CXCR3 IN_SAME_COMPONENT CXCL11 -CXCR3 IN_SAME_COMPONENT CXCL13 -CXCR3 IN_SAME_COMPONENT CXCL9 -CXCR3 IN_SAME_COMPONENT GNAI2 -CXCR3 IN_SAME_COMPONENT GNG2 -CXCR3 IN_SAME_COMPONENT PF4 -CXCR3 REACTS_WITH CCL11 -CXCR3 REACTS_WITH CXCL10 -CXCR3 REACTS_WITH CXCL11 -CXCR3 REACTS_WITH CXCL13 -CXCR3 REACTS_WITH CXCL9 -CXCR3 REACTS_WITH CXCR3 -CXCR3 REACTS_WITH GNAI2 -CXCR3 REACTS_WITH GNG2 -CXCR3 STATE_CHANGE GNG2 -CXCR4 CO_CONTROL SRC -CXCR4 IN_SAME_COMPONENT CXCL12 -CXCR4 IN_SAME_COMPONENT JAK2 -CXCR4 IN_SAME_COMPONENT PTPRC -CXCR4 IN_SAME_COMPONENT SDC4 -CXCR4 IN_SAME_COMPONENT VAV1 -CXCR4 REACTS_WITH CXCL12 -CXCR4 REACTS_WITH CXCR4 -CXCR4 REACTS_WITH JAK2 -CXCR4 REACTS_WITH PTPRC -CXCR4 REACTS_WITH SDC4 -CXCR4 REACTS_WITH VAV1 -CXCR4 STATE_CHANGE BCAR1 -CXCR4 STATE_CHANGE GNA13 -CXCR4 STATE_CHANGE GNG2 -CXCR4 STATE_CHANGE JAK2 -CXCR4 STATE_CHANGE LCK -CXCR4 STATE_CHANGE PXN -CXCR4 STATE_CHANGE RALB -CXCR4 STATE_CHANGE SSH1 -CXCR4 STATE_CHANGE STAT2 -CYBA IN_SAME_COMPONENT CYBB -CYBA IN_SAME_COMPONENT NCF1 -CYBA IN_SAME_COMPONENT NCF2 -CYBA IN_SAME_COMPONENT RAC1 -CYBA REACTS_WITH CYBA -CYBA REACTS_WITH CYBB -CYBA REACTS_WITH NCF1 -CYBA REACTS_WITH NCF2 -CYBA REACTS_WITH RAC1 -CYBB IN_SAME_COMPONENT CYBA -CYBB IN_SAME_COMPONENT NCF1 -CYBB IN_SAME_COMPONENT NCF2 -CYBB IN_SAME_COMPONENT RAC1 -CYBB REACTS_WITH CYBA -CYBB REACTS_WITH CYBB -CYBB REACTS_WITH NCF1 -CYBB REACTS_WITH NCF2 -CYBB REACTS_WITH RAC1 -CYCS CO_CONTROL DIABLO -CYFIP2 IN_SAME_COMPONENT ABI1 -CYFIP2 IN_SAME_COMPONENT ABI2 -CYFIP2 IN_SAME_COMPONENT C3orf10 -CYFIP2 IN_SAME_COMPONENT NCKAP1 -CYFIP2 IN_SAME_COMPONENT WASF1 -CYFIP2 IN_SAME_COMPONENT WASF2 -CYFIP2 REACTS_WITH ABI1 -CYFIP2 REACTS_WITH C3orf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orf10 -NCKAP1 IN_SAME_COMPONENT CYFIP2 -NCKAP1 IN_SAME_COMPONENT WASF1 -NCKAP1 IN_SAME_COMPONENT WASF2 -NCKAP1 REACTS_WITH ABI1 -NCKAP1 REACTS_WITH C3orf10 -NCKAP1 REACTS_WITH CYFIP2 -NCKAP1 REACTS_WITH NCKAP1 -NCKAP1 REACTS_WITH WASF2 -NCKAP1 STATE_CHANGE DIAPH1 -NCKAP1 STATE_CHANGE DIAPH3 -NCKAP1 STATE_CHANGE WASF2 -NCL IN_SAME_COMPONENT DKC1 -NCL IN_SAME_COMPONENT HSP90AA1 -NCL IN_SAME_COMPONENT ITGAV -NCL IN_SAME_COMPONENT ITGB3 -NCL IN_SAME_COMPONENT NSUN2 -NCL IN_SAME_COMPONENT PLAU -NCL IN_SAME_COMPONENT PLAUR -NCL IN_SAME_COMPONENT PTGES3 -NCL IN_SAME_COMPONENT TERT -NCL IN_SAME_COMPONENT VTN -NCL REACTS_WITH DKC1 -NCL REACTS_WITH HSP90AA1 -NCL REACTS_WITH ITGAV -NCL REACTS_WITH ITGB3 -NCL REACTS_WITH NCL -NCL REACTS_WITH NSUN2 -NCL REACTS_WITH PLAU -NCL REACTS_WITH PLAUR -NCL REACTS_WITH PTGES3 -NCL REACTS_WITH TERT -NCL REACTS_WITH VTN -NCOA1 CO_CONTROL AKT1 -NCOA1 CO_CONTROL AR -NCOA1 CO_CONTROL SMARCC1 -NCOA1 IN_SAME_COMPONENT AR -NCOA1 IN_SAME_COMPONENT ARNT -NCOA1 IN_SAME_COMPONENT HEY1 -NCOA1 IN_SAME_COMPONENT HIF1A -NCOA1 IN_SAME_COMPONENT KAT2B -NCOA1 METABOLIC_CATALYSIS EPO -NCOA1 METABOLIC_CATALYSIS KLK3 -NCOA1 METABOLIC_CATALYSIS PCK2 -NCOA1 METABOLIC_CATALYSIS SMARCC1 -NCOA1 REACTS_WITH AR -NCOA1 REACTS_WITH ARNT -NCOA1 REACTS_WITH HEY1 -NCOA1 REACTS_WITH HIF1A -NCOA1 REACTS_WITH KAT2B -NCOA1 REACTS_WITH NCOA1 -NCOA1 REACTS_WITH NCOR2 -NCOA1 STATE_CHANGE SMAD4 -NCOA1 STATE_CHANGE VDR -NCOA2 CO_CONTROL AR -NCOA2 CO_CONTROL ARNT -NCOA2 CO_CONTROL CCND3 -NCOA2 CO_CONTROL CEBPA -NCOA2 CO_CONTROL EHMT2 -NCOA2 CO_CONTROL FOXO1 -NCOA2 CO_CONTROL GATA2 -NCOA2 CO_CONTROL HIF1A -NCOA2 CO_CONTROL POU2F1 -NCOA2 CO_CONTROL SRC -NCOA2 CO_CONTROL TRIM24 -NCOA2 IN_SAME_COMPONENT AR -NCOA2 IN_SAME_COMPONENT CARM1 -NCOA2 IN_SAME_COMPONENT CTNNB1 -NCOA2 IN_SAME_COMPONENT KAT2B -NCOA2 IN_SAME_COMPONENT MEF2C -NCOA2 IN_SAME_COMPONENT SUV420H1 -NCOA2 METABOLIC_CATALYSIS EPO -NCOA2 METABOLIC_CATALYSIS KLK2 -NCOA2 METABOLIC_CATALYSIS KLK3 -NCOA2 REACTS_WITH AR -NCOA2 REACTS_WITH CARM1 -NCOA2 REACTS_WITH CTNNB1 -NCOA2 REACTS_WITH KAT2B -NCOA2 REACTS_WITH MEF2C -NCOA2 REACTS_WITH NCOA2 -NCOA2 REACTS_WITH SMAD4 -NCOA2 REACTS_WITH SUV420H1 -NCOA2 REACTS_WITH TCF7L2 -NCOA3 CO_CONTROL ESR1 -NCOA3 CO_CONTROL FOXA1 -NCOA3 IN_SAME_COMPONENT KAT2B -NCOA3 METABOLIC_CATALYSIS DSCAM -NCOA3 METABOLIC_CATALYSIS NRIP1 -NCOA3 METABOLIC_CATALYSIS SOD1 -NCOA3 METABOLIC_CATALYSIS TFF1 -NCOA3 METABOLIC_CATALYSIS XBP1 -NCOA3 REACTS_WITH KAT2B -NCOA3 REACTS_WITH NCOA3 -NCOA4 IN_SAME_COMPONENT AR -NCOA4 METABOLIC_CATALYSIS KLK3 -NCOA4 REACTS_WITH AR -NCOA4 REACTS_WITH NCOA4 -NCOA6 CO_CONTROL AR -NCOA6 METABOLIC_CATALYSIS KLK3 -NCOR1 CO_CONTROL CITED1 -NCOR1 IN_SAME_COMPONENT HDAC1 -NCOR1 IN_SAME_COMPONENT HDAC2 -NCOR1 IN_SAME_COMPONENT MYB -NCOR1 IN_SAME_COMPONENT RBBP4 -NCOR1 IN_SAME_COMPONENT RBBP7 -NCOR1 IN_SAME_COMPONENT SAP18 -NCOR1 IN_SAME_COMPONENT SAP30 -NCOR1 IN_SAME_COMPONENT SIN3A -NCOR1 IN_SAME_COMPONENT SIN3B -NCOR1 IN_SAME_COMPONENT SKI -NCOR1 IN_SAME_COMPONENT SKIL -NCOR1 IN_SAME_COMPONENT SMAD2 -NCOR1 IN_SAME_COMPONENT SMAD4 -NCOR1 IN_SAME_COMPONENT TAB2 -NCOR1 IN_SAME_COMPONENT TRIM28 -NCOR1 METABOLIC_CATALYSIS MYC -NCOR1 REACTS_WITH HDAC1 -NCOR1 REACTS_WITH HDAC2 -NCOR1 REACTS_WITH MYB -NCOR1 REACTS_WITH NCOR1 -NCOR1 REACTS_WITH RBBP4 -NCOR1 REACTS_WITH RBBP7 -NCOR1 REACTS_WITH SAP18 -NCOR1 REACTS_WITH SAP30 -NCOR1 REACTS_WITH SIN3A -NCOR1 REACTS_WITH SIN3B -NCOR1 REACTS_WITH SKI -NCOR1 REACTS_WITH SKIL -NCOR1 REACTS_WITH SMAD2 -NCOR1 REACTS_WITH SMAD4 -NCOR1 REACTS_WITH TAB2 -NCOR1 REACTS_WITH TRIM28 -NCOR1 STATE_CHANGE PPARG -NCOR1 STATE_CHANGE SMAD2 -NCOR1 STATE_CHANGE SMAD4 -NCOR2 CO_CONTROL HDAC4 -NCOR2 CO_CONTROL UBE2I -NCOR2 IN_SAME_COMPONENT HDAC3 -NCOR2 IN_SAME_COMPONENT HDAC4 -NCOR2 REACTS_WITH HDAC3 -NCOR2 REACTS_WITH HDAC4 -NCOR2 REACTS_WITH NCOA1 -NCOR2 REACTS_WITH NCOR2 -NCOR2 REACTS_WITH NRIP1 -NCOR2 STATE_CHANGE HDAC4 -NCOR2 STATE_CHANGE MEF2C -NCOR2 STATE_CHANGE PPARG -NCSTN IN_SAME_COMPONENT APH1A -NCSTN IN_SAME_COMPONENT APH1B -NCSTN IN_SAME_COMPONENT PSEN1 -NCSTN IN_SAME_COMPONENT PSENEN -NCSTN STATE_CHANGE CNTN1 -NCSTN STATE_CHANGE CNTN6 -NCSTN STATE_CHANGE CTNNB1 -NCSTN STATE_CHANGE DLL1 -NCSTN STATE_CHANGE DLL4 -NCSTN STATE_CHANGE DNER -NCSTN STATE_CHANGE FBXW11 -NCSTN STATE_CHANGE NOTCH1 -NCSTN STATE_CHANGE NOTCH2 -NCSTN STATE_CHANGE NOTCH3 -NCSTN STATE_CHANGE NOTCH4 -NCSTN STATE_CHANGE SDC3 -NCSTN STATE_CHANGE SORT1 -NCSTN STATE_CHANGE TRAF6 -NCSTN STATE_CHANGE ZNF274 -NDC80 IN_SAME_COMPONENT SPC24 -NDEL1 IN_SAME_COMPONENT AURKA -NDEL1 IN_SAME_COMPONENT DYNC1H1 -NDEL1 IN_SAME_COMPONENT DYNLT1 -NDEL1 IN_SAME_COMPONENT KATNA1 -NDEL1 IN_SAME_COMPONENT PAFAH1B1 -NDEL1 IN_SAME_COMPONENT TACC3 -NDEL1 IN_SAME_COMPONENT YWHAE -NDEL1 REACTS_WITH AURKA -NDEL1 REACTS_WITH DYNC1H1 -NDEL1 REACTS_WITH DYNLT1 -NDEL1 REACTS_WITH KATNA1 -NDEL1 REACTS_WITH NDEL1 -NDEL1 REACTS_WITH PAFAH1B1 -NDEL1 REACTS_WITH TACC3 -NDEL1 REACTS_WITH YWHAE -NDN IN_SAME_COMPONENT E2F1 -NDN IN_SAME_COMPONENT NGF -NDN IN_SAME_COMPONENT NGFR -NDN IN_SAME_COMPONENT SORT1 -NDNL2 IN_SAME_COMPONENT E2F1 -NDNL2 IN_SAME_COMPONENT NGF -NDNL2 IN_SAME_COMPONENT NGFR -NDNL2 IN_SAME_COMPONENT SORT1 -NDNL2 REACTS_WITH E2F1 -NDNL2 REACTS_WITH NDNL2 -NDNL2 REACTS_WITH NGF -NDNL2 REACTS_WITH NGFR -NDNL2 REACTS_WITH SORT1 -NDN REACTS_WITH E2F1 -NDN REACTS_WITH NDN -NDN REACTS_WITH NGF -NDN REACTS_WITH NGFR -NDN REACTS_WITH SORT1 -NEDD4 IN_SAME_COMPONENT GRB10 -NEDD4L IN_SAME_COMPONENT NGF -NEDD4L IN_SAME_COMPONENT SMAD2 -NEDD4L IN_SAME_COMPONENT SMAD7 -NEDD4L IN_SAME_COMPONENT STRAP -NEDD4L IN_SAME_COMPONENT TGFBR1 -NEDD4L IN_SAME_COMPONENT TGFBR2 -NEDD4L REACTS_WITH NEDD4L -NEDD4L REACTS_WITH NGF -NEDD4L REACTS_WITH SMAD2 -NEDD4L REACTS_WITH SMAD7 -NEDD4L REACTS_WITH STRAP -NEDD4L REACTS_WITH TGFBR1 -NEDD4L REACTS_WITH TGFBR2 -NEDD8 IN_SAME_COMPONENT TP53 -NEDD8 REACTS_WITH NEDD8 -NEDD8 REACTS_WITH TP53 -NET1 STATE_CHANGE RHOA -NEURL STATE_CHANGE JAG1 -NF1 CO_CONTROL FOXA2 -NF1 CO_CONTROL INS -NF1 IN_SAME_COMPONENT ATF2 -NF1 IN_SAME_COMPONENT BRCA1 -NF1 IN_SAME_COMPONENT POU2F1 -NF1 IN_SAME_COMPONENT SDC2 -NF1 METABOLIC_CATALYSIS ALAS1 -NF1 METABOLIC_CATALYSIS GADD45A -NF1 REACTS_WITH ATF2 -NF1 REACTS_WITH BRCA1 -NF1 REACTS_WITH NF1 -NF1 REACTS_WITH POU2F1 -NF1 REACTS_WITH SDC2 -NF1 STATE_CHANGE PRKACA -NFATC1 CO_CONTROL MAPK9 -NFATC1 IN_SAME_COMPONENT MAPK14 -NFATC1 IN_SAME_COMPONENT MAPK3 -NFATC1 IN_SAME_COMPONENT MAPK8 -NFATC1 METABOLIC_CATALYSIS IFNG -NFATC1 METABOLIC_CATALYSIS IL4 -NFATC1 REACTS_WITH CALM1 -NFATC1 REACTS_WITH MAPK14 -NFATC1 REACTS_WITH MAPK3 -NFATC1 REACTS_WITH MAPK8 -NFATC1 REACTS_WITH NFATC1 -NFATC2 CO_CONTROL FOS -NFATC2 CO_CONTROL FOXP3 -NFATC2 CO_CONTROL GATA3 -NFATC2 CO_CONTROL JUN -NFATC2 CO_CONTROL NFATC2 -NFATC2 IN_SAME_COMPONENT CSNK1A1 -NFATC2 IN_SAME_COMPONENT FOS -NFATC2 IN_SAME_COMPONENT FOSL1 -NFATC2 IN_SAME_COMPONENT FOXP3 -NFATC2 IN_SAME_COMPONENT JUN -NFATC2 IN_SAME_COMPONENT JUNB -NFATC2 IN_SAME_COMPONENT MEF2D -NFATC2 METABOLIC_CATALYSIS BCE1 -NFATC2 METABOLIC_CATALYSIS CASP3 -NFATC2 METABOLIC_CATALYSIS CTLA4 -NFATC2 METABOLIC_CATALYSIS DGKA -NFATC2 METABOLIC_CATALYSIS FASLG -NFATC2 METABOLIC_CATALYSIS GBP3 -NFATC2 METABOLIC_CATALYSIS IFNG -NFATC2 METABOLIC_CATALYSIS IKZF1 -NFATC2 METABOLIC_CATALYSIS IL2 -NFATC2 METABOLIC_CATALYSIS IL2RA -NFATC2 METABOLIC_CATALYSIS IL4 -NFATC2 METABOLIC_CATALYSIS NR4A1 -NFATC2 METABOLIC_CATALYSIS PTPN1 -NFATC2 METABOLIC_CATALYSIS PTPRK -NFATC2 METABOLIC_CATALYSIS SLC3A2 -NFATC2 REACTS_WITH CABIN1 -NFATC2 REACTS_WITH CSNK1A1 -NFATC2 REACTS_WITH FOS -NFATC2 REACTS_WITH FOSL1 -NFATC2 REACTS_WITH FOXP3 -NFATC2 REACTS_WITH JUN -NFATC2 REACTS_WITH JUNB -NFATC2 REACTS_WITH MEF2D -NFATC2 REACTS_WITH NFATC2 -NFATC3 IN_SAME_COMPONENT CSNK1A1 -NFATC3 IN_SAME_COMPONENT MAPK9 -NFATC3 REACTS_WITH CALM1 -NFATC3 REACTS_WITH CSNK1A1 -NFATC3 REACTS_WITH MAPK9 -NFATC3 REACTS_WITH NFATC3 -NFKB1 CO_CONTROL IKBKB -NFKB1 CO_CONTROL NFKBIA -NFKB1 CO_CONTROL NFKBIB -NFKB1 IN_SAME_COMPONENT ARRB2 -NFKB1 IN_SAME_COMPONENT BCL3 -NFKB1 IN_SAME_COMPONENT HDAC2 -NFKB1 IN_SAME_COMPONENT NFKBIA -NFKB1 IN_SAME_COMPONENT NFKBIB -NFKB1 IN_SAME_COMPONENT REL -NFKB1 IN_SAME_COMPONENT RELA -NFKB1 IN_SAME_COMPONENT RELB -NFKB1 IN_SAME_COMPONENT TERT -NFKB1 IN_SAME_COMPONENT YWHAE -NFKB1 INTERACTS_WITH NFKB1 -NFKB1 INTERACTS_WITH NFKBIA -NFKB1 INTERACTS_WITH RELA -NFKB1 METABOLIC_CATALYSIS BIRC3 -NFKB1 METABOLIC_CATALYSIS CSF2 -NFKB1 METABOLIC_CATALYSIS ICAM1 -NFKB1 METABOLIC_CATALYSIS IL17A -NFKB1 METABOLIC_CATALYSIS IL23A -NFKB1 METABOLIC_CATALYSIS IL6 -NFKB1 METABOLIC_CATALYSIS IL8 -NFKB1 METABOLIC_CATALYSIS MYC -NFKB1 METABOLIC_CATALYSIS NFKBIA -NFKB1 METABOLIC_CATALYSIS NFKBIB -NFKB1 METABOLIC_CATALYSIS SELE -NFKB1 METABOLIC_CATALYSIS TNF -NFKB1 METABOLIC_CATALYSIS TNFAIP3 -NFKB1 REACTS_WITH ARRB2 -NFKB1 REACTS_WITH BCL3 -NFKB1 REACTS_WITH HDAC2 -NFKB1 REACTS_WITH HDAC3 -NFKB1 REACTS_WITH MMP9 -NFKB1 REACTS_WITH NFKB1 -NFKB1 REACTS_WITH NFKBIA -NFKB1 REACTS_WITH NFKBIB -NFKB1 REACTS_WITH NR3C1 -NFKB1 REACTS_WITH PIK3CA -NFKB1 REACTS_WITH PIK3R1 -NFKB1 REACTS_WITH PLAU -NFKB1 REACTS_WITH REL -NFKB1 REACTS_WITH RELA -NFKB1 REACTS_WITH RELB -NFKB1 REACTS_WITH TERT -NFKB1 REACTS_WITH YWHAE -NFKB1 STATE_CHANGE BCL2A1 -NFKB1 STATE_CHANGE CASP8 -NFKB1 STATE_CHANGE NFKB1 -NFKB1 STATE_CHANGE NFKBIA -NFKB1 STATE_CHANGE NFKBIB -NFKB1 STATE_CHANGE POU2F2 -NFKB1 STATE_CHANGE RELA -NFKB2 IN_SAME_COMPONENT RELB -NFKB2 REACTS_WITH NFKB2 -NFKB2 REACTS_WITH RELB -NFKBIA CO_CONTROL NFKB1 -NFKBIA CO_CONTROL RELA -NFKBIA IN_SAME_COMPONENT ARRB2 -NFKBIA IN_SAME_COMPONENT HDAC1 -NFKBIA IN_SAME_COMPONENT HDAC3 -NFKBIA IN_SAME_COMPONENT NFKB1 -NFKBIA IN_SAME_COMPONENT PIK3R1 -NFKBIA IN_SAME_COMPONENT RELA -NFKBIA INTERACTS_WITH NFKB1 -NFKBIA INTERACTS_WITH NFKBIA -NFKBIA INTERACTS_WITH RELA -NFKBIA METABOLIC_CATALYSIS BIRC3 -NFKBIA METABOLIC_CATALYSIS IL17A -NFKBIA METABOLIC_CATALYSIS IL23A -NFKBIA METABOLIC_CATALYSIS NFKBIA -NFKBIA REACTS_WITH ARRB2 -NFKBIA REACTS_WITH HDAC1 -NFKBIA REACTS_WITH HDAC3 -NFKBIA REACTS_WITH NFKB1 -NFKBIA REACTS_WITH NFKBIA -NFKBIA REACTS_WITH PIK3CA -NFKBIA REACTS_WITH PIK3R1 -NFKBIA REACTS_WITH RELA -NFKBIA STATE_CHANGE NFKB1 -NFKBIA STATE_CHANGE RELA -NFKBIB CO_CONTROL NFKB1 -NFKBIB CO_CONTROL RELA -NFKBIB IN_SAME_COMPONENT NFKB1 -NFKBIB IN_SAME_COMPONENT RELA -NFKBIB METABOLIC_CATALYSIS NFKBIB -NFKBIB REACTS_WITH NFKB1 -NFKBIB REACTS_WITH NFKBIB -NFKBIB REACTS_WITH RELA -NFYA CO_CONTROL MAX -NFYA CO_CONTROL MYC -NFYA CO_CONTROL NFYA -NFYA CO_CONTROL NFYB -NFYA CO_CONTROL NFYC -NFYA IN_SAME_COMPONENT MAX -NFYA IN_SAME_COMPONENT MYC -NFYA IN_SAME_COMPONENT NFYB -NFYA IN_SAME_COMPONENT NFYC -NFYA IN_SAME_COMPONENT TP53 -NFYA METABOLIC_CATALYSIS PDGFRB -NFYA REACTS_WITH MAX -NFYA REACTS_WITH MYC -NFYA REACTS_WITH NFYA -NFYA REACTS_WITH NFYB -NFYA REACTS_WITH NFYC -NFYA REACTS_WITH TP53 -NFYB CO_CONTROL MAX -NFYB CO_CONTROL MYC -NFYB CO_CONTROL NFYA -NFYB CO_CONTROL NFYB -NFYB CO_CONTROL NFYC -NFYB IN_SAME_COMPONENT MAX -NFYB IN_SAME_COMPONENT MYC -NFYB IN_SAME_COMPONENT NFYA -NFYB IN_SAME_COMPONENT NFYC -NFYB IN_SAME_COMPONENT TP53 -NFYB METABOLIC_CATALYSIS PDGFRB -NFYB REACTS_WITH MAX -NFYB REACTS_WITH MYC -NFYB REACTS_WITH NFYA -NFYB REACTS_WITH NFYB -NFYB REACTS_WITH NFYC -NFYB REACTS_WITH TP53 -NFYC CO_CONTROL MAX -NFYC CO_CONTROL MYC -NFYC CO_CONTROL NFYA -NFYC CO_CONTROL NFYB -NFYC CO_CONTROL NFYC -NFYC IN_SAME_COMPONENT MAX -NFYC IN_SAME_COMPONENT MYC -NFYC IN_SAME_COMPONENT NFYA -NFYC IN_SAME_COMPONENT NFYB -NFYC IN_SAME_COMPONENT TP53 -NFYC METABOLIC_CATALYSIS PDGFRB -NFYC REACTS_WITH MAX -NFYC REACTS_WITH MYC -NFYC REACTS_WITH NFYA -NFYC REACTS_WITH NFYB -NFYC REACTS_WITH NFYC -NFYC REACTS_WITH TP53 -NGEF IN_SAME_COMPONENT EFNA1 -NGEF REACTS_WITH EFNA1 -NGEF REACTS_WITH NGEF -NGEF STATE_CHANGE CDC42 -NGEF STATE_CHANGE RAC1 -NGEF STATE_CHANGE RHOA -NGF IN_SAME_COMPONENT ARHGAP32 -NGF IN_SAME_COMPONENT BEX1 -NGF IN_SAME_COMPONENT FAIM -NGF IN_SAME_COMPONENT GIPC1 -NGF IN_SAME_COMPONENT IRAK1 -NGF IN_SAME_COMPONENT MAGED1 -NGF IN_SAME_COMPONENT MAGEH1 -NGF IN_SAME_COMPONENT MATK -NGF IN_SAME_COMPONENT NDN -NGF IN_SAME_COMPONENT NDNL2 -NGF IN_SAME_COMPONENT NEDD4L -NGF IN_SAME_COMPONENT NGFR -NGF IN_SAME_COMPONENT NGFRAP1 -NGF IN_SAME_COMPONENT PLCG1 -NGF IN_SAME_COMPONENT RGS19 -NGF IN_SAME_COMPONENT RIPK2 -NGF IN_SAME_COMPONENT SORT1 -NGF IN_SAME_COMPONENT SQSTM1 -NGF IN_SAME_COMPONENT TRAF6 -NGF IN_SAME_COMPONENT TRPV1 -NGF IN_SAME_COMPONENT YWHAE -NGF IN_SAME_COMPONENT ZNF274 -NGFRAP1 IN_SAME_COMPONENT NGF -NGFRAP1 IN_SAME_COMPONENT NGFR -NGFRAP1 IN_SAME_COMPONENT SORT1 -NGFRAP1 IN_SAME_COMPONENT YWHAE -NGFRAP1 REACTS_WITH NGF -NGFRAP1 REACTS_WITH NGFR -NGFRAP1 REACTS_WITH NGFRAP1 -NGFRAP1 REACTS_WITH SORT1 -NGFRAP1 REACTS_WITH YWHAE -NGFR CO_CONTROL MAGED1 -NGFR CO_CONTROL SH2B1 -NGF REACTS_WITH ARHGAP32 -NGF REACTS_WITH BEX1 -NGF REACTS_WITH E2F1 -NGF REACTS_WITH FAIM -NGF REACTS_WITH GIPC1 -NGF REACTS_WITH IRAK1 -NGF REACTS_WITH MAGED1 -NGF REACTS_WITH MAGEH1 -NGF REACTS_WITH MATK -NGF REACTS_WITH NDN -NGF REACTS_WITH NDNL2 -NGF REACTS_WITH NEDD4L -NGF REACTS_WITH NGF -NGF REACTS_WITH NGFR -NGF REACTS_WITH NGFRAP1 -NGF REACTS_WITH PLCG1 -NGF REACTS_WITH RGS19 -NGF REACTS_WITH RIPK2 -NGF REACTS_WITH SORT1 -NGF REACTS_WITH SQSTM1 -NGF REACTS_WITH TRAF6 -NGF REACTS_WITH TRPV1 -NGF REACTS_WITH YWHAE -NGF REACTS_WITH ZNF274 -NGFR IN_SAME_COMPONENT APP -NGFR IN_SAME_COMPONENT ARHGDIA -NGFR IN_SAME_COMPONENT BDNF -NGFR IN_SAME_COMPONENT BEX1 -NGFR IN_SAME_COMPONENT IRAK1 -NGFR IN_SAME_COMPONENT LINGO1 -NGFR IN_SAME_COMPONENT MAGED1 -NGFR IN_SAME_COMPONENT MAGEH1 -NGFR IN_SAME_COMPONENT NDN -NGFR IN_SAME_COMPONENT NDNL2 -NGFR IN_SAME_COMPONENT NGF -NGFR IN_SAME_COMPONENT NGFRAP1 -NGFR IN_SAME_COMPONENT NTF3 -NGFR IN_SAME_COMPONENT NTF4 -NGFR IN_SAME_COMPONENT RIPK2 -NGFR IN_SAME_COMPONENT RTN4R -NGFR IN_SAME_COMPONENT SORT1 -NGFR IN_SAME_COMPONENT SQSTM1 -NGFR IN_SAME_COMPONENT TRAF6 -NGFR IN_SAME_COMPONENT YWHAE -NGFR IN_SAME_COMPONENT ZNF274 -NGFR REACTS_WITH APP -NGFR REACTS_WITH ARHGDIA -NGFR REACTS_WITH BDNF -NGFR REACTS_WITH BEX1 -NGFR REACTS_WITH E2F1 -NGFR REACTS_WITH IRAK1 -NGFR REACTS_WITH LINGO1 -NGFR REACTS_WITH MAGED1 -NGFR REACTS_WITH MAGEH1 -NGFR REACTS_WITH NDN -NGFR REACTS_WITH NDNL2 -NGFR REACTS_WITH NGF -NGFR REACTS_WITH NGFR -NGFR REACTS_WITH NGFRAP1 -NGFR REACTS_WITH NTF3 -NGFR REACTS_WITH NTF4 -NGFR REACTS_WITH RHOA -NGFR REACTS_WITH RIPK2 -NGFR REACTS_WITH RTN4R -NGFR REACTS_WITH SORT1 -NGFR REACTS_WITH SQSTM1 -NGFR REACTS_WITH TRAF6 -NGFR REACTS_WITH YWHAE -NGFR REACTS_WITH ZNF274 -NGFR STATE_CHANGE CASP6 -NGFR STATE_CHANGE CYCS -NGFR STATE_CHANGE NGF -NGFR STATE_CHANGE NTF3 -NGFR STATE_CHANGE NTF4 -NGFR STATE_CHANGE NTRK2 -NGFR STATE_CHANGE PIK3CA -NGFR STATE_CHANGE PIK3R1 -NGFR STATE_CHANGE PRDM4 -NGFR STATE_CHANGE RAC1 -NGFR STATE_CHANGE SHC1 -NGFR STATE_CHANGE SMPD2 -NGFR STATE_CHANGE TP53 -NGF STATE_CHANGE AGAP2 -NGF STATE_CHANGE CASP6 -NGF STATE_CHANGE CYCS -NGF STATE_CHANGE DNAJA3 -NGF STATE_CHANGE EPB41L1 -NGF STATE_CHANGE PIK3CA -NGF STATE_CHANGE PIK3R1 -NGF STATE_CHANGE PRDM4 -NGF STATE_CHANGE RAC1 -NGF STATE_CHANGE RASGRF1 -NGF STATE_CHANGE SHC1 -NGF STATE_CHANGE SMPD2 -NID1 IN_SAME_COMPONENT ITGA3 -NID1 IN_SAME_COMPONENT ITGB1 -NID1 REACTS_WITH ITGA3 -NID1 REACTS_WITH ITGB1 -NID1 REACTS_WITH NID1 -NINL IN_SAME_COMPONENT TUBG1 -NINL REACTS_WITH NINL -NINL REACTS_WITH TUBG1 -NKD1 STATE_CHANGE PPP2R5D -NKD2 REACTS_WITH NKD2 -NKX2-5 IN_SAME_COMPONENT FOXH1 -NKX2-5 IN_SAME_COMPONENT SMAD2 -NKX2-5 IN_SAME_COMPONENT SMAD4 -NKX2-5 METABOLIC_CATALYSIS MEF2C -NKX2-5 REACTS_WITH FOXH1 -NKX2-5 REACTS_WITH NKX2-5 -NKX2-5 REACTS_WITH SMAD2 -NKX2-5 REACTS_WITH SMAD4 -NLK IN_SAME_COMPONENT CHD7 -NLK IN_SAME_COMPONENT PPARG -NLK IN_SAME_COMPONENT SETDB1 -NLK REACTS_WITH CHD7 -NLK REACTS_WITH NLK -NLK REACTS_WITH PPARG -NLK REACTS_WITH SETDB1 -NLK STATE_CHANGE AES -NLK STATE_CHANGE CREBBP -NLK STATE_CHANGE CTBP1 -NLK STATE_CHANGE CTNNB1 -NLK STATE_CHANGE HNF1A -NLK STATE_CHANGE MYB -NLK STATE_CHANGE TLE1 -NLRP1 STATE_CHANGE CASP1 -NME1 CO_CONTROL VAV2 -NME1 IN_SAME_COMPONENT TIAM1 -NME1 REACTS_WITH NME1 -NME1 REACTS_WITH TIAM1 -NME1 STATE_CHANGE CDC42 -NME1 STATE_CHANGE DNM2 -NME1 STATE_CHANGE RAC1 -NOC2L CO_CONTROL EP300 -NOC2L METABOLIC_CATALYSIS CDKN1A -NOD2 IN_SAME_COMPONENT RIPK2 -NOD2 STATE_CHANGE IKBKG -NOG REACTS_WITH BAMBI -NOG REACTS_WITH BMPR2 -NOG REACTS_WITH NOG -NONO REACTS_WITH NONO -NOS2 STATE_CHANGE IL12A -NOS2 STATE_CHANGE IL12B -NOS2 STATE_CHANGE IL12RB1 -NOS2 STATE_CHANGE IL12RB2 -NOS2 STATE_CHANGE JAK2 -NOS2 STATE_CHANGE TYK2 -NOS3 IN_SAME_COMPONENT CAV1 -NOS3 IN_SAME_COMPONENT GAB1 -NOS3 IN_SAME_COMPONENT HSP90AA1 -NOS3 IN_SAME_COMPONENT HSP90AB1 -NOS3 IN_SAME_COMPONENT PRKACA -NOS3 IN_SAME_COMPONENT PTPN11 -NOS3 REACTS_WITH CAV1 -NOS3 REACTS_WITH GAB1 -NOS3 REACTS_WITH HSP90AA1 -NOS3 REACTS_WITH HSP90AB1 -NOS3 REACTS_WITH NOS3 -NOS3 REACTS_WITH PRKACA -NOS3 REACTS_WITH PTPN11 -NOTCH1 CO_CONTROL CTBP1 -NOTCH1 CO_CONTROL DTX1 -NOTCH1 CO_CONTROL ENO1 -NOTCH1 CO_CONTROL GATA3 -NOTCH1 CO_CONTROL HDAC1 -NOTCH1 CO_CONTROL HES1 -NOTCH1 CO_CONTROL KDM1A -NOTCH1 CO_CONTROL MYCBP -NOTCH1 CO_CONTROL NOTCH2 -NOTCH1 CO_CONTROL RBBP8 -NOTCH1 CO_CONTROL RBPJ -NOTCH1 CO_CONTROL SPEN -NOTCH1 CO_CONTROL TWIST1 -NOTCH1 IN_SAME_COMPONENT CNTN1 -NOTCH1 IN_SAME_COMPONENT CNTN6 -NOTCH1 IN_SAME_COMPONENT DLK1 -NOTCH1 IN_SAME_COMPONENT DLL1 -NOTCH1 IN_SAME_COMPONENT DNER -NOTCH1 IN_SAME_COMPONENT DTX1 -NOTCH1 IN_SAME_COMPONENT DVL1 -NOTCH1 IN_SAME_COMPONENT EP300 -NOTCH1 IN_SAME_COMPONENT JAG1 -NOTCH1 IN_SAME_COMPONENT JAG2 -NOTCH1 IN_SAME_COMPONENT RBPJ -NOTCH1 IN_SAME_COMPONENT YY1 -NOTCH1 METABOLIC_CATALYSIS CCND1 -NOTCH1 METABOLIC_CATALYSIS CDKN1A -NOTCH1 METABOLIC_CATALYSIS GATA3 -NOTCH1 METABOLIC_CATALYSIS HES1 -NOTCH1 METABOLIC_CATALYSIS HEY1 -NOTCH1 METABOLIC_CATALYSIS HEY2 -NOTCH1 METABOLIC_CATALYSIS IL4 -NOTCH1 METABOLIC_CATALYSIS MYC -NOTCH1 METABOLIC_CATALYSIS PTCRA -NOTCH1 METABOLIC_CATALYSIS SKP2 -NOTCH1 REACTS_WITH CNTN1 -NOTCH1 REACTS_WITH CNTN6 -NOTCH1 REACTS_WITH CTBP1 -NOTCH1 REACTS_WITH DLK1 -NOTCH1 REACTS_WITH DLL1 -NOTCH1 REACTS_WITH DNER -NOTCH1 REACTS_WITH DTX1 -NOTCH1 REACTS_WITH DVL1 -NOTCH1 REACTS_WITH EP300 -NOTCH1 REACTS_WITH HDAC1 -NOTCH1 REACTS_WITH HES1 -NOTCH1 REACTS_WITH HEY1 -NOTCH1 REACTS_WITH JAG1 -NOTCH1 REACTS_WITH JAG2 -NOTCH1 REACTS_WITH KDM1A -NOTCH1 REACTS_WITH NOTCH1 -NOTCH1 REACTS_WITH RBBP8 -NOTCH1 REACTS_WITH RBPJ -NOTCH1 REACTS_WITH SPEN -NOTCH1 REACTS_WITH YY1 -NOTCH1 STATE_CHANGE APC -NOTCH1 STATE_CHANGE AXIN1 -NOTCH1 STATE_CHANGE CTNNB1 -NOTCH2 CO_CONTROL DTX1 -NOTCH2 CO_CONTROL NOTCH1 -NOTCH2 IN_SAME_COMPONENT CNTN1 -NOTCH2 REACTS_WITH CNTN1 -NOTCH2 REACTS_WITH NOTCH2 -NOTCH3 REACTS_WITH NOTCH3 -NOTCH4 IN_SAME_COMPONENT DLL4 -NOTCH4 REACTS_WITH DLL4 -NOTCH4 REACTS_WITH NOTCH4 -NOX1 IN_SAME_COMPONENT NOXA1 -NOX1 IN_SAME_COMPONENT NOXO1 -NOX1 IN_SAME_COMPONENT RAC1 -NOX1 REACTS_WITH NOX1 -NOX1 REACTS_WITH NOXA1 -NOX1 REACTS_WITH NOXO1 -NOX1 REACTS_WITH RAC1 -NOX4 STATE_CHANGE PTPN1 -NOXA1 IN_SAME_COMPONENT NOX1 -NOXA1 IN_SAME_COMPONENT NOXO1 -NOXA1 IN_SAME_COMPONENT RAC1 -NOXA1 REACTS_WITH NOX1 -NOXA1 REACTS_WITH NOXA1 -NOXA1 REACTS_WITH NOXO1 -NOXA1 REACTS_WITH RAC1 -NOXO1 IN_SAME_COMPONENT NOX1 -NOXO1 IN_SAME_COMPONENT NOXA1 -NOXO1 IN_SAME_COMPONENT RAC1 -NOXO1 REACTS_WITH NOX1 -NOXO1 REACTS_WITH NOXA1 -NOXO1 REACTS_WITH NOXO1 -NOXO1 REACTS_WITH RAC1 -NPAS2 IN_SAME_COMPONENT ARNTL -NPAS2 IN_SAME_COMPONENT CLOCK -NPAS2 METABOLIC_CATALYSIS NR1D1 -NPAS2 METABOLIC_CATALYSIS TIMELESS -NPAS2 REACTS_WITH ARNTL -NPAS2 REACTS_WITH CLOCK -NPAS2 REACTS_WITH NPAS2 -NPHS1 IN_SAME_COMPONENT ARRB2 -NPHS1 IN_SAME_COMPONENT CD2AP -NPHS1 IN_SAME_COMPONENT F2RL2 -NPHS1 IN_SAME_COMPONENT KIRREL -NPHS1 IN_SAME_COMPONENT NPHS2 -NPHS1 IN_SAME_COMPONENT PARD6A -NPHS1 IN_SAME_COMPONENT PLCG1 -NPHS1 IN_SAME_COMPONENT TJP1 -NPHS1 IN_SAME_COMPONENT WASL -NPHS1 REACTS_WITH ARRB2 -NPHS1 REACTS_WITH CD2AP -NPHS1 REACTS_WITH F2RL2 -NPHS1 REACTS_WITH KIRREL -NPHS1 REACTS_WITH NPHS1 -NPHS1 REACTS_WITH NPHS2 -NPHS1 REACTS_WITH PARD6A -NPHS1 REACTS_WITH PLCG1 -NPHS1 REACTS_WITH TJP1 -NPHS1 REACTS_WITH WASL -NPHS1 STATE_CHANGE FYN -NPHS1 STATE_CHANGE TRPC6 -NPHS2 IN_SAME_COMPONENT CD2AP -NPHS2 IN_SAME_COMPONENT KIRREL -NPHS2 IN_SAME_COMPONENT NPHS1 -NPHS2 IN_SAME_COMPONENT PLCG1 -NPHS2 IN_SAME_COMPONENT WASL -NPHS2 REACTS_WITH CD2AP -NPHS2 REACTS_WITH KIRREL -NPHS2 REACTS_WITH NPHS1 -NPHS2 REACTS_WITH NPHS2 -NPHS2 REACTS_WITH PLCG1 -NPHS2 REACTS_WITH WASL -NPHS2 STATE_CHANGE FYN -NPHS2 STATE_CHANGE TRPC6 -NPNT IN_SAME_COMPONENT ITGA8 -NPNT IN_SAME_COMPONENT ITGB1 -NPNT REACTS_WITH ITGA8 -NPNT REACTS_WITH ITGB1 -NPNT REACTS_WITH NPNT -NR0B1 IN_SAME_COMPONENT AR -NR0B1 REACTS_WITH AR -NR0B1 REACTS_WITH NR0B1 -NR1H4 IN_SAME_COMPONENT MED1 -NR1H4 REACTS_WITH MED1 -NR1H4 REACTS_WITH NR1H4 -NR2C1 CO_CONTROL AR -NR2C1 IN_SAME_COMPONENT HDAC3 -NR2C1 METABOLIC_CATALYSIS KLK3 -NR2C1 REACTS_WITH HDAC3 -NR2C1 REACTS_WITH NR2C1 -NR2C2 CO_CONTROL AR -NR2C2 METABOLIC_CATALYSIS KLK3 -NR2F2 CO_CONTROL FOXA1 -NR2F2 CO_CONTROL SP1 -NR2F2 METABOLIC_CATALYSIS APOB -NR2F2 METABOLIC_CATALYSIS TERT -NR3C1 CO_CONTROL FOXA2 -NR3C1 CO_CONTROL INS -NR3C1 CO_CONTROL SMAD4 -NR3C1 IN_SAME_COMPONENT AR -NR3C1 IN_SAME_COMPONENT HDAC6 -NR3C1 IN_SAME_COMPONENT HSP90AA1 -NR3C1 IN_SAME_COMPONENT SMAD4 -NR3C1 METABOLIC_CATALYSIS IGFBP1 -NR3C1 METABOLIC_CATALYSIS SERPINE1 -NR3C1 METABOLIC_CATALYSIS TAT -NR3C1 REACTS_WITH AR -NR3C1 REACTS_WITH HDAC6 -NR3C1 REACTS_WITH HSP90AA1 -NR3C1 REACTS_WITH NFKB1 -NR3C1 REACTS_WITH NR3C1 -NR3C1 REACTS_WITH RELA -NR3C1 REACTS_WITH SMAD4 -NR4A1 IN_SAME_COMPONENT BCL2 -NR4A1 METABOLIC_CATALYSIS POMC -NR4A1 REACTS_WITH BCL2 -NR4A1 REACTS_WITH NR4A1 -NRG1 IN_SAME_COMPONENT GPC1 -NRG1 REACTS_WITH GPC1 -NRG1 REACTS_WITH NRG1 -NRG2 IN_SAME_COMPONENT ERBB2 -NRG2 IN_SAME_COMPONENT ERBB3 -NRG2 REACTS_WITH ERBB2 -NRG2 REACTS_WITH ERBB3 -NRG2 REACTS_WITH NRG2 -NRG3 REACTS_WITH NRG3 -NRG4 IN_SAME_COMPONENT EGFR -NRG4 IN_SAME_COMPONENT ERBB2 -NRG4 REACTS_WITH EGFR -NRG4 REACTS_WITH ERBB2 -NRG4 REACTS_WITH NRG4 -NRIP1 CO_CONTROL AR -NRIP1 IN_SAME_COMPONENT HDAC1 -NRIP1 IN_SAME_COMPONENT HDAC3 -NRIP1 METABOLIC_CATALYSIS KLK3 -NRIP1 REACTS_WITH HDAC1 -NRIP1 REACTS_WITH HDAC3 -NRIP1 REACTS_WITH NCOR2 -NRIP1 REACTS_WITH NRIP1 -NRP1 IN_SAME_COMPONENT FLT1 -NRP1 REACTS_WITH FLT1 -NRP1 REACTS_WITH NRP1 -NRP2 IN_SAME_COMPONENT FLT1 -NRP2 REACTS_WITH FLT1 -NRP2 REACTS_WITH NRP2 -NSMAF CO_CONTROL BIRC3 -NSMAF CO_CONTROL CRADD -NSMAF CO_CONTROL MADD -NSMAF CO_CONTROL RIPK1 -NSMAF CO_CONTROL TNF -NSMAF CO_CONTROL TNFRSF1A -NSMAF CO_CONTROL TRADD -NSMAF CO_CONTROL TRAF2 -NSMAF IN_SAME_COMPONENT SMPD2 -NSMAF IN_SAME_COMPONENT TNF -NSMAF IN_SAME_COMPONENT TNFRSF1A -NSMAF REACTS_WITH NSMAF -NSMAF REACTS_WITH SMPD2 -NSMAF REACTS_WITH TNF -NSMAF REACTS_WITH TNFRSF1A -NSMAF STATE_CHANGE SMPD1 -NSMAF STATE_CHANGE SMPD3 -NSUN2 IN_SAME_COMPONENT NCL -NSUN2 REACTS_WITH NCL -NSUN2 REACTS_WITH NSUN2 -NTF3 IN_SAME_COMPONENT NGFR -NTF3 IN_SAME_COMPONENT NTRK2 -NTF3 REACTS_WITH NGFR -NTF3 REACTS_WITH NTF3 -NTF3 REACTS_WITH NTRK2 -NTF3 REACTS_WITH NTRK3 -NTF3 STATE_CHANGE MCF2L -NTF3 STATE_CHANGE TIAM1 -NTF4 IN_SAME_COMPONENT NGFR -NTF4 IN_SAME_COMPONENT NTRK2 -NTF4 IN_SAME_COMPONENT TRAF6 -NTF4 REACTS_WITH NGFR -NTF4 REACTS_WITH NTF4 -NTF4 REACTS_WITH NTRK2 -NTF4 REACTS_WITH TRAF6 -NTN1 IN_SAME_COMPONENT BCAR1 -NTN1 IN_SAME_COMPONENT DCC -NTN1 IN_SAME_COMPONENT DOCK1 -NTN1 IN_SAME_COMPONENT ELMO1 -NTN1 IN_SAME_COMPONENT FYN -NTN1 IN_SAME_COMPONENT MYO10 -NTN1 IN_SAME_COMPONENT NCK1 -NTN1 IN_SAME_COMPONENT PAK1 -NTN1 IN_SAME_COMPONENT UNC5A -NTN1 IN_SAME_COMPONENT UNC5B -NTN1 IN_SAME_COMPONENT UNC5C -NTN1 REACTS_WITH BCAR1 -NTN1 REACTS_WITH DCC -NTN1 REACTS_WITH DOCK1 -NTN1 REACTS_WITH ELMO1 -NTN1 REACTS_WITH FYN -NTN1 REACTS_WITH MYO10 -NTN1 REACTS_WITH NCK1 -NTN1 REACTS_WITH NTN1 -NTN1 REACTS_WITH PAK1 -NTN1 REACTS_WITH UNC5A -NTN1 REACTS_WITH UNC5B -NTN1 REACTS_WITH UNC5C -NTN1 STATE_CHANGE CDC42 -NTN1 STATE_CHANGE DAPK1 -NTN1 STATE_CHANGE FYN -NTN1 STATE_CHANGE MAP1B -NTN1 STATE_CHANGE PITPNA -NTN1 STATE_CHANGE RAC1 -NTN1 STATE_CHANGE RHOA -NTN1 STATE_CHANGE TRIO -NTRK2 IN_SAME_COMPONENT BDNF -NTRK2 IN_SAME_COMPONENT GIPC1 -NTRK2 IN_SAME_COMPONENT NTF3 -NTRK2 IN_SAME_COMPONENT NTF4 -NTRK2 REACTS_WITH BDNF -NTRK2 REACTS_WITH GIPC1 -NTRK2 REACTS_WITH NTF3 -NTRK2 REACTS_WITH NTF4 -NTRK2 REACTS_WITH NTRK2 -NTRK2 STATE_CHANGE CDC42 -NTRK2 STATE_CHANGE CDH2 -NTRK2 STATE_CHANGE CTNNA1 -NTRK2 STATE_CHANGE CTNNB1 -NTRK2 STATE_CHANGE CTNND1 -NTRK3 REACTS_WITH NTF3 -NUDC IN_SAME_COMPONENT PAFAH1B1 -NUDC REACTS_WITH NUDC -NUDC REACTS_WITH PAFAH1B1 -NUDC STATE_CHANGE PLK1 -NUDT16L1 IN_SAME_COMPONENT SDC4 -NUDT16L1 REACTS_WITH NUDT16L1 -NUDT16L1 REACTS_WITH SDC4 -NUMB IN_SAME_COMPONENT CDH1 -NUMB IN_SAME_COMPONENT CTNNA1 -NUMB IN_SAME_COMPONENT CTNNB1 -NUMB IN_SAME_COMPONENT F2RL2 -NUMB IN_SAME_COMPONENT ITCH -NUMB IN_SAME_COMPONENT PARD6A -NUMB REACTS_WITH CDH1 -NUMB REACTS_WITH CTNNA1 -NUMB REACTS_WITH CTNNB1 -NUMB REACTS_WITH F2RL2 -NUMB REACTS_WITH ITCH -NUMB REACTS_WITH NUMB -NUMB REACTS_WITH PARD6A -NUMB STATE_CHANGE NOTCH1 -NUP153 CO_CONTROL KPNA2 -NUP153 CO_CONTROL NUP214 -NUP153 STATE_CHANGE SMAD2 -NUP153 STATE_CHANGE SMAD4 -NUP214 CO_CONTROL KPNA2 -NUP214 CO_CONTROL NUP153 -NUP214 CO_CONTROL SMAD1 -NUP214 CO_CONTROL SMURF1 -NUP214 IN_SAME_COMPONENT RAN -NUP214 IN_SAME_COMPONENT XPO1 -NUP214 STATE_CHANGE NFATC1 -NUP214 STATE_CHANGE NFATC2 -NUP214 STATE_CHANGE SMAD1 -NUP214 STATE_CHANGE SMAD2 -NUP214 STATE_CHANGE SMAD4 -OAZ1 IN_SAME_COMPONENT AURKA -OAZ1 REACTS_WITH AURKA -OAZ1 REACTS_WITH OAZ1 -OBSCN STATE_CHANGE RHOA -OCLN IN_SAME_COMPONENT PARD6A -OCLN IN_SAME_COMPONENT SMURF1 -OCLN IN_SAME_COMPONENT TGFBR1 -OCLN IN_SAME_COMPONENT TGFBR2 -OCLN REACTS_WITH OCLN -OCLN REACTS_WITH PARD6A -OCLN REACTS_WITH SMURF1 -OCLN REACTS_WITH TGFBR1 -OCLN REACTS_WITH TGFBR2 -OCLN REACTS_WITH TGFBR3 -ONECUT1 METABOLIC_CATALYSIS CCND1 -ONECUT1 METABOLIC_CATALYSIS ONECUT1 -ONECUT1 METABOLIC_CATALYSIS TGFA -ONECUT1 REACTS_WITH ONECUT1 -OPHN1 STATE_CHANGE RHOA -OS9 STATE_CHANGE HIF1A -PA2G4 CO_CONTROL AR -PA2G4 METABOLIC_CATALYSIS KLK3 -PAFAH1B1 IN_SAME_COMPONENT CLIP1 -PAFAH1B1 IN_SAME_COMPONENT DAB1 -PAFAH1B1 IN_SAME_COMPONENT DYNC1H1 -PAFAH1B1 IN_SAME_COMPONENT DYNLT1 -PAFAH1B1 IN_SAME_COMPONENT IQGAP1 -PAFAH1B1 IN_SAME_COMPONENT KATNA1 -PAFAH1B1 IN_SAME_COMPONENT MAP1B -PAFAH1B1 IN_SAME_COMPONENT NDEL1 -PAFAH1B1 IN_SAME_COMPONENT NUDC -PAFAH1B1 IN_SAME_COMPONENT PAFAH1B2 -PAFAH1B1 IN_SAME_COMPONENT PAFAH1B3 -PAFAH1B1 IN_SAME_COMPONENT PLA2G7 -PAFAH1B1 IN_SAME_COMPONENT RELN -PAFAH1B1 IN_SAME_COMPONENT VLDLR -PAFAH1B1 REACTS_WITH CALM1 -PAFAH1B1 REACTS_WITH CLIP1 -PAFAH1B1 REACTS_WITH DAB1 -PAFAH1B1 REACTS_WITH DYNC1H1 -PAFAH1B1 REACTS_WITH DYNLT1 -PAFAH1B1 REACTS_WITH IQGAP1 -PAFAH1B1 REACTS_WITH KATNA1 -PAFAH1B1 REACTS_WITH MAP1B -PAFAH1B1 REACTS_WITH NDEL1 -PAFAH1B1 REACTS_WITH NUDC -PAFAH1B1 REACTS_WITH PAFAH1B1 -PAFAH1B1 REACTS_WITH PAFAH1B2 -PAFAH1B1 REACTS_WITH PAFAH1B3 -PAFAH1B1 REACTS_WITH PLA2G7 -PAFAH1B1 REACTS_WITH RELN -PAFAH1B1 REACTS_WITH VLDLR -PAFAH1B1 STATE_CHANGE CDC42 -PAFAH1B1 STATE_CHANGE RAC1 -PAFAH1B1 STATE_CHANGE RHOA -PAFAH1B2 IN_SAME_COMPONENT DAB1 -PAFAH1B2 IN_SAME_COMPONENT PAFAH1B1 -PAFAH1B2 IN_SAME_COMPONENT PAFAH1B3 -PAFAH1B2 IN_SAME_COMPONENT RELN -PAFAH1B2 IN_SAME_COMPONENT VLDLR -PAFAH1B2 REACTS_WITH DAB1 -PAFAH1B2 REACTS_WITH PAFAH1B1 -PAFAH1B2 REACTS_WITH PAFAH1B2 -PAFAH1B2 REACTS_WITH PAFAH1B3 -PAFAH1B2 REACTS_WITH RELN -PAFAH1B2 REACTS_WITH VLDLR -PAFAH1B3 IN_SAME_COMPONENT DAB1 -PAFAH1B3 IN_SAME_COMPONENT PAFAH1B1 -PAFAH1B3 IN_SAME_COMPONENT PAFAH1B2 -PAFAH1B3 IN_SAME_COMPONENT RELN -PAFAH1B3 IN_SAME_COMPONENT VLDLR -PAFAH1B3 REACTS_WITH DAB1 -PAFAH1B3 REACTS_WITH PAFAH1B1 -PAFAH1B3 REACTS_WITH PAFAH1B2 -PAFAH1B3 REACTS_WITH PAFAH1B3 -PAFAH1B3 REACTS_WITH RELN -PAFAH1B3 REACTS_WITH VLDLR -PAG1 CO_CONTROL PTPRC -PAG1 IN_SAME_COMPONENT CSK -PAG1 REACTS_WITH CSK -PAG1 REACTS_WITH PAG1 -PAG1 STATE_CHANGE CD79A -PAG1 STATE_CHANGE CD79B -PAG1 STATE_CHANGE CSK -PAG1 STATE_CHANGE FYN -PAG1 STATE_CHANGE LCK -PAG1 STATE_CHANGE LYN -PAK1 IN_SAME_COMPONENT ARHGEF7 -PAK1 IN_SAME_COMPONENT AURKA -PAK1 IN_SAME_COMPONENT DCC -PAK1 IN_SAME_COMPONENT DOK2 -PAK1 IN_SAME_COMPONENT EGF -PAK1 IN_SAME_COMPONENT EGFR -PAK1 IN_SAME_COMPONENT GIT1 -PAK1 IN_SAME_COMPONENT GIT2 -PAK1 IN_SAME_COMPONENT NCK1 -PAK1 IN_SAME_COMPONENT NTN1 -PAK1 IN_SAME_COMPONENT PXN -PAK1 REACTS_WITH ARHGEF7 -PAK1 REACTS_WITH AURKA -PAK1 REACTS_WITH DCC -PAK1 REACTS_WITH DOK2 -PAK1 REACTS_WITH EGF -PAK1 REACTS_WITH EGFR -PAK1 REACTS_WITH GIT1 -PAK1 REACTS_WITH GIT2 -PAK1 REACTS_WITH NCK1 -PAK1 REACTS_WITH NTN1 -PAK1 REACTS_WITH PAK1 -PAK1 REACTS_WITH PXN -PAK1 STATE_CHANGE ARHGDIA -PAK1 STATE_CHANGE LIMK1 -PAK1 STATE_CHANGE MAP2K1 -PAK1 STATE_CHANGE MAP2K4 -PAK1 STATE_CHANGE NCF1 -PAK1 STATE_CHANGE NCF2 -PAK1 STATE_CHANGE PLK1 -PAK1 STATE_CHANGE RAC1 -PAK1 STATE_CHANGE RAF1 -PAK1 STATE_CHANGE TRIO -PAK2 IN_SAME_COMPONENT FYN -PAK2 IN_SAME_COMPONENT KDR -PAK2 IN_SAME_COMPONENT VEGFA -PAK2 REACTS_WITH FYN -PAK2 REACTS_WITH KDR -PAK2 REACTS_WITH PAK2 -PAK2 REACTS_WITH VEGFA -PAK2 STATE_CHANGE CDC42 -PAK2 STATE_CHANGE MAP3K1 -PAK2 STATE_CHANGE MAX -PAK2 STATE_CHANGE MYC -PAK4 IN_SAME_COMPONENT GAB1 -PAK4 IN_SAME_COMPONENT HGF -PAK4 IN_SAME_COMPONENT MET -PAK4 REACTS_WITH FGF1 -PAK4 REACTS_WITH GAB1 -PAK4 REACTS_WITH HGF -PAK4 REACTS_WITH MET -PAK4 REACTS_WITH PAK4 -PAK4 REACTS_WITH SSH1 -PARD6A IN_SAME_COMPONENT CDC42 -PARD6A IN_SAME_COMPONENT CDH1 -PARD6A IN_SAME_COMPONENT CTNNA1 -PARD6A IN_SAME_COMPONENT CTNNB1 -PARD6A IN_SAME_COMPONENT F2RL2 -PARD6A IN_SAME_COMPONENT KIRREL -PARD6A IN_SAME_COMPONENT NPHS1 -PARD6A IN_SAME_COMPONENT NUMB -PARD6A IN_SAME_COMPONENT OCLN -PARD6A IN_SAME_COMPONENT PRKCE -PARD6A IN_SAME_COMPONENT PRKCZ -PARD6A IN_SAME_COMPONENT SMURF1 -PARD6A IN_SAME_COMPONENT TGFBR1 -PARD6A IN_SAME_COMPONENT TGFBR2 -PARD6A REACTS_WITH CDC42 -PARD6A REACTS_WITH CDH1 -PARD6A REACTS_WITH CTNNA1 -PARD6A REACTS_WITH CTNNB1 -PARD6A REACTS_WITH F2RL2 -PARD6A REACTS_WITH KIRREL -PARD6A REACTS_WITH NPHS1 -PARD6A REACTS_WITH NUMB -PARD6A REACTS_WITH OCLN -PARD6A REACTS_WITH PARD6A -PARD6A REACTS_WITH PRKCE -PARD6A REACTS_WITH PRKCZ -PARD6A REACTS_WITH SMURF1 -PARD6A REACTS_WITH TGFBR1 -PARD6A REACTS_WITH TGFBR2 -PARD6A REACTS_WITH TGFBR3 -PARD6A STATE_CHANGE DLG1 -PARD6A STATE_CHANGE GSK3B -PARD6A STATE_CHANGE TIAM1 -PARK2 STATE_CHANGE SNCA -PARK2 STATE_CHANGE SNCAIP -PARK7 IN_SAME_COMPONENT SNCA -PARK7 REACTS_WITH PARK7 -PARK7 REACTS_WITH SNCA -PARP14 CO_CONTROL BCL6 -PARP14 CO_CONTROL EGR2 -PARP14 CO_CONTROL IRF4 -PARP14 IN_SAME_COMPONENT STAT6 -PARP14 METABOLIC_CATALYSIS FCER2 -PARP1 CO_CONTROL CREBBP -PARP1 CO_CONTROL HES1 -PARP1 CO_CONTROL HES6 -PARP1 CO_CONTROL PARP1 -PARP1 CO_CONTROL TLE1 -PARP1 IN_SAME_COMPONENT CREBBP -PARP1 IN_SAME_COMPONENT HES1 -PARP1 IN_SAME_COMPONENT TLE1 -PARP1 METABOLIC_CATALYSIS ASCL1 -PARP1 REACTS_WITH CREBBP -PARP1 REACTS_WITH HES1 -PARP1 REACTS_WITH PARP1 -PARP1 REACTS_WITH TLE1 -PARP2 IN_SAME_COMPONENT TERF2 -PARP2 REACTS_WITH PARP2 -PARP2 REACTS_WITH TERF2 -PATZ1 CO_CONTROL AR -PATZ1 METABOLIC_CATALYSIS KLK3 -PAWR CO_CONTROL AR -PAWR IN_SAME_COMPONENT PRKCZ -PAWR METABOLIC_CATALYSIS KLK3 -PAWR REACTS_WITH PAWR -PAWR REACTS_WITH PRKCZ -PAWR STATE_CHANGE NFKB1 -PAWR STATE_CHANGE NFKBIA -PAWR STATE_CHANGE RELA -PAX3 METABOLIC_CATALYSIS MET -PBX1 CO_CONTROL POU2F1 -PBX1 METABOLIC_CATALYSIS PRL -PCNA IN_SAME_COMPONENT BARD1 -PCNA IN_SAME_COMPONENT BRCA1 -PCNA IN_SAME_COMPONENT RAD51 -PCNA REACTS_WITH BARD1 -PCNA REACTS_WITH BRCA1 -PCNA REACTS_WITH PCNA -PCNA REACTS_WITH RAD51 -PDCD4 IN_SAME_COMPONENT EIF4A1 -PDCD4 REACTS_WITH EIF4A1 -PDCD4 REACTS_WITH PDCD4 -PDE3B REACTS_WITH PDE3B -PDE6A IN_SAME_COMPONENT PDE6B -PDE6A IN_SAME_COMPONENT PDE6G -PDE6A REACTS_WITH GNAT1 -PDE6A REACTS_WITH PDE6A -PDE6A REACTS_WITH PDE6B -PDE6A REACTS_WITH PDE6G -PDE6A STATE_CHANGE CNGA1 -PDE6A STATE_CHANGE CNGB1 -PDE6B IN_SAME_COMPONENT PDE6A -PDE6B IN_SAME_COMPONENT PDE6G -PDE6B REACTS_WITH GNAT1 -PDE6B REACTS_WITH PDE6A -PDE6B REACTS_WITH PDE6B -PDE6B REACTS_WITH PDE6G -PDE6B STATE_CHANGE CNGA1 -PDE6B STATE_CHANGE CNGB1 -PDE6C IN_SAME_COMPONENT PDE6H -PDE6C REACTS_WITH GNAT2 -PDE6C REACTS_WITH PDE6C -PDE6C REACTS_WITH PDE6H -PDE6C STATE_CHANGE CNGA3 -PDE6C STATE_CHANGE CNGB3 -PDE6G IN_SAME_COMPONENT GNAT1 -PDE6G IN_SAME_COMPONENT PDE6A -PDE6G IN_SAME_COMPONENT PDE6B -PDE6G REACTS_WITH GNAT1 -PDE6G REACTS_WITH PDE6A -PDE6G REACTS_WITH PDE6B -PDE6G REACTS_WITH PDE6G -PDE6G STATE_CHANGE CNGA1 -PDE6G STATE_CHANGE CNGB1 -PDE6H IN_SAME_COMPONENT GNAT2 -PDE6H IN_SAME_COMPONENT PDE6C -PDE6H REACTS_WITH GNAT2 -PDE6H REACTS_WITH PDE6C -PDE6H REACTS_WITH PDE6H -PDE6H STATE_CHANGE CNGA3 -PDE6H STATE_CHANGE CNGB3 -PDGFA CO_CONTROL ASAH1 -PDGFA IN_SAME_COMPONENT PDGFB -PDGFA IN_SAME_COMPONENT PDGFRA -PDGFA IN_SAME_COMPONENT PDGFRB -PDGFA REACTS_WITH PDGFA -PDGFA REACTS_WITH PDGFB -PDGFA REACTS_WITH PDGFRA -PDGFA REACTS_WITH PDGFRB -PDGFA STATE_CHANGE SPHK2 -PDGFB CO_CONTROL EIF2AK2 -PDGFB CO_CONTROL S1PR3 -PDGFB CO_CONTROL SLA -PDGFB IN_SAME_COMPONENT CBL -PDGFB IN_SAME_COMPONENT DNM2 -PDGFB IN_SAME_COMPONENT DOCK4 -PDGFB IN_SAME_COMPONENT GAB1 -PDGFB IN_SAME_COMPONENT GRB10 -PDGFB IN_SAME_COMPONENT ITGAV -PDGFB IN_SAME_COMPONENT ITGB3 -PDGFB IN_SAME_COMPONENT LRP1 -PDGFB IN_SAME_COMPONENT PDGFA -PDGFB IN_SAME_COMPONENT PDGFRA -PDGFB IN_SAME_COMPONENT PDGFRB -PDGFB IN_SAME_COMPONENT PLCG1 -PDGFB IN_SAME_COMPONENT PTEN -PDGFB IN_SAME_COMPONENT PTPN11 -PDGFB IN_SAME_COMPONENT RASA1 -PDGFB IN_SAME_COMPONENT S1PR1 -PDGFB IN_SAME_COMPONENT SOS1 -PDGFB IN_SAME_COMPONENT WASL -PDGFB METABOLIC_CATALYSIS BCAR1 -PDGFB REACTS_WITH CBL -PDGFB REACTS_WITH DNM2 -PDGFB REACTS_WITH DOCK4 -PDGFB REACTS_WITH GAB1 -PDGFB REACTS_WITH GRB10 -PDGFB REACTS_WITH ITGAV -PDGFB REACTS_WITH ITGB3 -PDGFB REACTS_WITH LRP1 -PDGFB REACTS_WITH PDGFA -PDGFB REACTS_WITH PDGFB -PDGFB REACTS_WITH PDGFRA -PDGFB REACTS_WITH PDGFRB -PDGFB REACTS_WITH PLCG1 -PDGFB REACTS_WITH PTEN -PDGFB REACTS_WITH PTPN11 -PDGFB REACTS_WITH RASA1 -PDGFB REACTS_WITH S1PR1 -PDGFB REACTS_WITH SOS1 -PDGFB REACTS_WITH WASL -PDGFB STATE_CHANGE AKT1 -PDGFB STATE_CHANGE CRK -PDGFB STATE_CHANGE DOK1 -PDGFB STATE_CHANGE JAK2 -PDGFB STATE_CHANGE PAG1 -PDGFB STATE_CHANGE PAK1 -PDGFB STATE_CHANGE PIK3CA -PDGFB STATE_CHANGE PIK3R1 -PDGFB STATE_CHANGE RAB5A -PDGFB STATE_CHANGE RAC1 -PDGFB STATE_CHANGE SPHK1 -PDGFB STATE_CHANGE STAT1 -PDGFB STATE_CHANGE STAT3 -PDGFC IN_SAME_COMPONENT PDGFRA -PDGFC IN_SAME_COMPONENT PDGFRB -PDGFC REACTS_WITH PDGFC -PDGFC REACTS_WITH PDGFRA -PDGFC REACTS_WITH PDGFRB -PDGFD IN_SAME_COMPONENT PDGFRA -PDGFD IN_SAME_COMPONENT PDGFRB -PDGFD REACTS_WITH PDGFD -PDGFD REACTS_WITH PDGFRA -PDGFD REACTS_WITH PDGFRB -PDGFRA IN_SAME_COMPONENT CAV1 -PDGFRA IN_SAME_COMPONENT CAV3 -PDGFRA IN_SAME_COMPONENT CRK -PDGFRA IN_SAME_COMPONENT CRKL -PDGFRA IN_SAME_COMPONENT ITGAV -PDGFRA IN_SAME_COMPONENT PDGFA -PDGFRA IN_SAME_COMPONENT PDGFB -PDGFRA IN_SAME_COMPONENT PDGFC -PDGFRA IN_SAME_COMPONENT PDGFD -PDGFRA IN_SAME_COMPONENT PDGFRB -PDGFRA IN_SAME_COMPONENT RAPGEF1 -PDGFRA IN_SAME_COMPONENT SHB -PDGFRA IN_SAME_COMPONENT SHF -PDGFRA INTERACTS_WITH IFNG -PDGFRA REACTS_WITH CAV1 -PDGFRA REACTS_WITH CAV3 -PDGFRA REACTS_WITH CRK -PDGFRA REACTS_WITH CRKL -PDGFRA REACTS_WITH ITGAV -PDGFRA REACTS_WITH PDGFA -PDGFRA REACTS_WITH PDGFB -PDGFRA REACTS_WITH PDGFC -PDGFRA REACTS_WITH PDGFD -PDGFRA REACTS_WITH PDGFRA -PDGFRA REACTS_WITH PDGFRB -PDGFRA REACTS_WITH RAPGEF1 -PDGFRA REACTS_WITH SHB -PDGFRA REACTS_WITH SHF -PDGFRA STATE_CHANGE JAK1 -PDGFRA STATE_CHANGE PLCG1 -PDGFRB CO_CONTROL EIF2AK2 -PDGFRB CO_CONTROL S1PR3 -PDGFRB CO_CONTROL SLA -PDGFRB IN_SAME_COMPONENT CBL -PDGFRB IN_SAME_COMPONENT DNM2 -PDGFRB IN_SAME_COMPONENT DOCK4 -PDGFRB IN_SAME_COMPONENT GAB1 -PDGFRB IN_SAME_COMPONENT GRB10 -PDGFRB IN_SAME_COMPONENT ITGAV -PDGFRB IN_SAME_COMPONENT ITGB3 -PDGFRB IN_SAME_COMPONENT LRP1 -PDGFRB IN_SAME_COMPONENT PDGFA -PDGFRB IN_SAME_COMPONENT PDGFB -PDGFRB IN_SAME_COMPONENT PDGFC -PDGFRB IN_SAME_COMPONENT PDGFD -PDGFRB IN_SAME_COMPONENT PDGFRA -PDGFRB IN_SAME_COMPONENT PLCG1 -PDGFRB IN_SAME_COMPONENT PTEN -PDGFRB IN_SAME_COMPONENT PTPN11 -PDGFRB IN_SAME_COMPONENT RASA1 -PDGFRB IN_SAME_COMPONENT S1PR1 -PDGFRB IN_SAME_COMPONENT SOS1 -PDGFRB IN_SAME_COMPONENT WASL -PDGFRB METABOLIC_CATALYSIS BCAR1 -PDGFRB REACTS_WITH CBL -PDGFRB REACTS_WITH DNM2 -PDGFRB REACTS_WITH DOCK4 -PDGFRB REACTS_WITH GAB1 -PDGFRB REACTS_WITH GRB10 -PDGFRB REACTS_WITH ITGAV -PDGFRB REACTS_WITH ITGB3 -PDGFRB REACTS_WITH LRP1 -PDGFRB REACTS_WITH PDGFA -PDGFRB REACTS_WITH PDGFB -PDGFRB REACTS_WITH PDGFC -PDGFRB REACTS_WITH PDGFD -PDGFRB REACTS_WITH PDGFRA -PDGFRB REACTS_WITH PDGFRB -PDGFRB REACTS_WITH PLAU -PDGFRB REACTS_WITH PLAUR -PDGFRB REACTS_WITH PLCG1 -PDGFRB REACTS_WITH PTEN -PDGFRB REACTS_WITH PTPN11 -PDGFRB REACTS_WITH RASA1 -PDGFRB REACTS_WITH S1PR1 -PDGFRB REACTS_WITH SOS1 -PDGFRB REACTS_WITH WASL -PDGFRB STATE_CHANGE AKT1 -PDGFRB STATE_CHANGE CRK -PDGFRB STATE_CHANGE DOK1 -PDGFRB STATE_CHANGE JAK2 -PDGFRB STATE_CHANGE PAG1 -PDGFRB STATE_CHANGE PAK1 -PDGFRB STATE_CHANGE PIK3CA -PDGFRB STATE_CHANGE PIK3R1 -PDGFRB STATE_CHANGE RAB5A -PDGFRB STATE_CHANGE RAC1 -PDGFRB STATE_CHANGE SPHK1 -PDGFRB STATE_CHANGE STAT1 -PDGFRB STATE_CHANGE STAT3 -PDLIM7 IN_SAME_COMPONENT GDNF -PDLIM7 IN_SAME_COMPONENT GFRA1 -PDLIM7 REACTS_WITH GDNF -PDLIM7 REACTS_WITH GFRA1 -PDLIM7 REACTS_WITH PDLIM7 -PDPK1 CO_CONTROL AKT1 -PDPK1 CO_CONTROL FLNA -PDPK1 CO_CONTROL GAB2 -PDPK1 CO_CONTROL PRKCQ -PDPK1 IN_SAME_COMPONENT BCL10 -PDPK1 IN_SAME_COMPONENT CARD11 -PDPK1 IN_SAME_COMPONENT GRB14 -PDPK1 IN_SAME_COMPONENT HSP90AA1 -PDPK1 IN_SAME_COMPONENT INS -PDPK1 IN_SAME_COMPONENT INSR -PDPK1 IN_SAME_COMPONENT MALT1 -PDPK1 IN_SAME_COMPONENT PRKCQ -PDPK1 IN_SAME_COMPONENT SRC -PDPK1 IN_SAME_COMPONENT TRAF6 -PDPK1 REACTS_WITH BCL10 -PDPK1 REACTS_WITH CARD11 -PDPK1 REACTS_WITH GRB14 -PDPK1 REACTS_WITH INS -PDPK1 REACTS_WITH INSR -PDPK1 REACTS_WITH MALT1 -PDPK1 REACTS_WITH PDPK1 -PDPK1 REACTS_WITH PRKCQ -PDPK1 REACTS_WITH TRAF6 -PDPK1 STATE_CHANGE AKT1 -PDPK1 STATE_CHANGE AKT2 -PDPK1 STATE_CHANGE AKT3 -PDPK1 STATE_CHANGE IKBKG -PDPK1 STATE_CHANGE PRKCZ -PDPK1 STATE_CHANGE RALGDS -PDPK1 STATE_CHANGE RPS6KA3 -PDPK1 STATE_CHANGE RPS6KB1 -PDPK1 STATE_CHANGE SGK1 -PDPK1 STATE_CHANGE SMAD7 -PDPK1 STATE_CHANGE STRAP -PDPK1 STATE_CHANGE TGFBR1 -PDPK1 STATE_CHANGE TGFBR2 -PEBP1 CO_CONTROL CENPA -PEBP1 IN_SAME_COMPONENT RAF1 -PEBP1 REACTS_WITH PEBP1 -PEBP1 REACTS_WITH RAF1 -PEBP1 STATE_CHANGE AURKB -PEBP1 STATE_CHANGE BIRC5 -PEBP1 STATE_CHANGE CDCA8 -PEBP1 STATE_CHANGE INCENP -PECAM1 IN_SAME_COMPONENT ITGAV -PECAM1 IN_SAME_COMPONENT ITGB3 -PECAM1 IN_SAME_COMPONENT SPHK1 -PECAM1 REACTS_WITH ITGAV -PECAM1 REACTS_WITH ITGB3 -PECAM1 REACTS_WITH PECAM1 -PECAM1 REACTS_WITH SPHK1 -PELP1 CO_CONTROL AR -PELP1 CO_CONTROL FHL2 -PELP1 IN_SAME_COMPONENT AR -PELP1 IN_SAME_COMPONENT BCAR1 -PELP1 IN_SAME_COMPONENT ESR1 -PELP1 IN_SAME_COMPONENT PIK3CA -PELP1 IN_SAME_COMPONENT PIK3R1 -PELP1 IN_SAME_COMPONENT SOS1 -PELP1 IN_SAME_COMPONENT SRC -PELP1 METABOLIC_CATALYSIS KLK3 -PELP1 REACTS_WITH AR -PELP1 REACTS_WITH BCAR1 -PELP1 REACTS_WITH ESR1 -PELP1 REACTS_WITH PELP1 -PELP1 REACTS_WITH PIK3CA -PELP1 REACTS_WITH PIK3R1 -PELP1 REACTS_WITH SOS1 -PELP1 REACTS_WITH SRC -PELP1 STATE_CHANGE AKT1 -PELP1 STATE_CHANGE HRAS -PELP1 STATE_CHANGE IGF1 -PELP1 STATE_CHANGE IGF1R -PER1 IN_SAME_COMPONENT TIMELESS -PER1 REACTS_WITH PER1 -PER1 REACTS_WITH TIMELESS -PF4 IN_SAME_COMPONENT CXCR3 -PF4 REACTS_WITH PF4 -PF4 STATE_CHANGE GNG2 -PFDN5 REACTS_WITH MYC -PFDN5 REACTS_WITH PFDN5 -PGF IN_SAME_COMPONENT FLT1 -PGF REACTS_WITH FLT1 -PGF REACTS_WITH PGF -PGF STATE_CHANGE PIK3CA -PGF STATE_CHANGE PIK3R1 -PGF STATE_CHANGE PLCG1 -PI4KA IN_SAME_COMPONENT PI4KB -PI4KA IN_SAME_COMPONENT PTK2B -PI4KA REACTS_WITH PI4KA -PI4KA REACTS_WITH PI4KB -PI4KA REACTS_WITH PTK2B -PI4KB IN_SAME_COMPONENT PI4KA -PI4KB IN_SAME_COMPONENT PTK2B -PI4KB REACTS_WITH PI4KA -PI4KB REACTS_WITH PI4KB -PI4KB REACTS_WITH PTK2B -PIAS1 CO_CONTROL AR -PIAS1 IN_SAME_COMPONENT STAT1 -PIAS1 IN_SAME_COMPONENT SUFU -PIAS1 METABOLIC_CATALYSIS KLK3 -PIAS1 REACTS_WITH PIAS1 -PIAS1 REACTS_WITH STAT1 -PIAS1 REACTS_WITH SUFU -PIAS1 STATE_CHANGE MDM2 -PIAS2 IN_SAME_COMPONENT STAT4 -PIAS2 REACTS_WITH PIAS2 -PIAS2 REACTS_WITH STAT4 -PIAS2 STATE_CHANGE MDM2 -PIAS3 CO_CONTROL AR -PIAS3 CO_CONTROL PIAS4 -PIAS3 IN_SAME_COMPONENT MITF -PIAS3 IN_SAME_COMPONENT STAT3 -PIAS3 METABOLIC_CATALYSIS KLK3 -PIAS3 REACTS_WITH MITF -PIAS3 REACTS_WITH PIAS3 -PIAS3 REACTS_WITH STAT3 -PIAS3 STATE_CHANGE MYB -PIAS3 STATE_CHANGE SMAD2 -PIAS3 STATE_CHANGE SMAD4 -PIAS4 CO_CONTROL AR -PIAS4 CO_CONTROL PIAS3 -PIAS4 IN_SAME_COMPONENT SMAD4 -PIAS4 IN_SAME_COMPONENT STAT1 -PIAS4 IN_SAME_COMPONENT UBE2I -PIAS4 METABOLIC_CATALYSIS KLK3 -PIAS4 METABOLIC_CATALYSIS SOCS1 -PIAS4 REACTS_WITH PIAS4 -PIAS4 REACTS_WITH SMAD4 -PIAS4 REACTS_WITH STAT1 -PIAS4 REACTS_WITH UBE2I -PIK3C2B REACTS_WITH PIK3CA -PIK3C2B REACTS_WITH PIK3R1 -PIK3CA CO_CONTROL CD79A -PIK3CA CO_CONTROL CD79B -PIK3CA CO_CONTROL ITGA2B -PIK3CA CO_CONTROL ITGB3 -PIK3CA CO_CONTROL LYN -PIK3CA CO_CONTROL PTEN -PIK3CA CO_CONTROL RAC1 -PIK3CA CO_CONTROL SRC -PIK3CA IN_SAME_COMPONENT AGAP2 -PIK3CA IN_SAME_COMPONENT AR -PIK3CA IN_SAME_COMPONENT CD19 -PIK3CA IN_SAME_COMPONENT CSF2 -PIK3CA IN_SAME_COMPONENT CSF2RA -PIK3CA IN_SAME_COMPONENT CSF2RB -PIK3CA IN_SAME_COMPONENT DAB1 -PIK3CA IN_SAME_COMPONENT EFNA1 -PIK3CA IN_SAME_COMPONENT EPHA2 -PIK3CA IN_SAME_COMPONENT ESR1 -PIK3CA IN_SAME_COMPONENT FYN -PIK3CA IN_SAME_COMPONENT GAB1 -PIK3CA IN_SAME_COMPONENT GAB2 -PIK3CA IN_SAME_COMPONENT GNG2 -PIK3CA IN_SAME_COMPONENT GSN -PIK3CA IN_SAME_COMPONENT IL1B -PIK3CA IN_SAME_COMPONENT IL1R1 -PIK3CA IN_SAME_COMPONENT IL2 -PIK3CA IN_SAME_COMPONENT IL2RA -PIK3CA IN_SAME_COMPONENT IL2RB -PIK3CA IN_SAME_COMPONENT IL2RG -PIK3CA IN_SAME_COMPONENT IL3 -PIK3CA IN_SAME_COMPONENT IL3RA -PIK3CA IN_SAME_COMPONENT ITGA6 -PIK3CA IN_SAME_COMPONENT JAK1 -PIK3CA IN_SAME_COMPONENT JAK2 -PIK3CA IN_SAME_COMPONENT JAK3 -PIK3CA IN_SAME_COMPONENT LCK -PIK3CA IN_SAME_COMPONENT PELP1 -PIK3CA IN_SAME_COMPONENT PIK3R1 -PIK3CA IN_SAME_COMPONENT PTPN11 -PIK3CA IN_SAME_COMPONENT RELN -PIK3CA IN_SAME_COMPONENT SHC1 -PIK3CA IN_SAME_COMPONENT SOS1 -PIK3CA IN_SAME_COMPONENT SRC -PIK3CA IN_SAME_COMPONENT VLDLR -PIK3CA IN_SAME_COMPONENT YWHAZ -PIK3CA INTERACTS_WITH LYN -PIK3CA METABOLIC_CATALYSIS BCL2L1 -PIK3CA METABOLIC_CATALYSIS CCND1 -PIK3CA METABOLIC_CATALYSIS CCND3 -PIK3CA METABOLIC_CATALYSIS PLAU -PIK3CA REACTS_WITH AGAP2 -PIK3CA REACTS_WITH AR -PIK3CA REACTS_WITH CD19 -PIK3CA REACTS_WITH CDH1 -PIK3CA REACTS_WITH CSF2 -PIK3CA REACTS_WITH CSF2RA -PIK3CA REACTS_WITH CSF2RB -PIK3CA REACTS_WITH DAB1 -PIK3CA REACTS_WITH EFNA1 -PIK3CA REACTS_WITH EPB41L1 -PIK3CA REACTS_WITH EPHA2 -PIK3CA REACTS_WITH ESR1 -PIK3CA REACTS_WITH FYN -PIK3CA REACTS_WITH GAB1 -PIK3CA REACTS_WITH GAB2 -PIK3CA REACTS_WITH GNG2 -PIK3CA REACTS_WITH GSN -PIK3CA REACTS_WITH IL1B -PIK3CA REACTS_WITH IL1R1 -PIK3CA REACTS_WITH IL2 -PIK3CA REACTS_WITH IL2RA -PIK3CA REACTS_WITH IL2RB -PIK3CA REACTS_WITH IL2RG -PIK3CA REACTS_WITH IL3 -PIK3CA REACTS_WITH IL3RA -PIK3CA REACTS_WITH ITGA6 -PIK3CA REACTS_WITH ITGB4 -PIK3CA REACTS_WITH JAK1 -PIK3CA REACTS_WITH JAK2 -PIK3CA REACTS_WITH JAK3 -PIK3CA REACTS_WITH LCK -PIK3CA REACTS_WITH NFKB1 -PIK3CA REACTS_WITH NFKBIA -PIK3CA REACTS_WITH PELP1 -PIK3CA REACTS_WITH PIK3C2B -PIK3CA REACTS_WITH PIK3CA -PIK3CA REACTS_WITH PIK3R1 -PIK3CA REACTS_WITH PTPN11 -PIK3CA REACTS_WITH RELA -PIK3CA REACTS_WITH RELN -PIK3CA REACTS_WITH SHC1 -PIK3CA REACTS_WITH SOS1 -PIK3CA REACTS_WITH SRC -PIK3CA REACTS_WITH VLDLR -PIK3CA REACTS_WITH YWHAZ -PIK3CA STATE_CHANGE AKT1 -PIK3CA STATE_CHANGE BCAR1 -PIK3CA STATE_CHANGE BTK -PIK3CA STATE_CHANGE CRK -PIK3CA STATE_CHANGE DAPP1 -PIK3CA STATE_CHANGE MTOR -PIK3CA STATE_CHANGE NFKB1 -PIK3CA STATE_CHANGE NGF -PIK3CA STATE_CHANGE PDPK1 -PIK3CA STATE_CHANGE PRKCD -PIK3CA STATE_CHANGE PRKCZ -PIK3CA STATE_CHANGE PXN -PIK3CA STATE_CHANGE RAC1 -PIK3CA STATE_CHANGE RELA -PIK3CA STATE_CHANGE RHOA -PIK3CA STATE_CHANGE RPS6KB1 -PIK3CA STATE_CHANGE SGMS1 -PIK3CA STATE_CHANGE SMPD1 -PIK3CA STATE_CHANGE STAT3 -PIK3CA STATE_CHANGE TRPV1 -PIK3CA STATE_CHANGE UGCG -PIK3CA STATE_CHANGE VAV2 -PIK3CB IN_SAME_COMPONENT EGFR -PIK3CB IN_SAME_COMPONENT GAB1 -PIK3CB IN_SAME_COMPONENT PIK3R1 -PIK3CB REACTS_WITH EGFR -PIK3CB REACTS_WITH GAB1 -PIK3CB REACTS_WITH PIK3CB -PIK3CB REACTS_WITH PIK3R1 -PIK3CB STATE_CHANGE AKT1 -PIK3CB STATE_CHANGE TIAM1 -PIK3CG IN_SAME_COMPONENT CBL -PIK3CG IN_SAME_COMPONENT GNG2 -PIK3CG IN_SAME_COMPONENT PIK3R6 -PIK3CG REACTS_WITH CBL -PIK3CG REACTS_WITH GNG2 -PIK3CG REACTS_WITH PIK3CG -PIK3CG REACTS_WITH PIK3R6 -PIK3R1 CO_CONTROL CD79A -PIK3R1 CO_CONTROL CD79B -PIK3R1 CO_CONTROL ITGA2B -PIK3R1 CO_CONTROL ITGB3 -PIK3R1 CO_CONTROL LYN -PIK3R1 CO_CONTROL PTEN -PIK3R1 CO_CONTROL RAC1 -PIK3R1 CO_CONTROL SRC -PIK3R1 IN_SAME_COMPONENT AGAP2 -PIK3R1 IN_SAME_COMPONENT AR -PIK3R1 IN_SAME_COMPONENT CD19 -PIK3R1 IN_SAME_COMPONENT CSF2 -PIK3R1 IN_SAME_COMPONENT CSF2RA -PIK3R1 IN_SAME_COMPONENT CSF2RB -PIK3R1 IN_SAME_COMPONENT DAB1 -PIK3R1 IN_SAME_COMPONENT EFNA1 -PIK3R1 IN_SAME_COMPONENT EGFR -PIK3R1 IN_SAME_COMPONENT EPHA2 -PIK3R1 IN_SAME_COMPONENT ESR1 -PIK3R1 IN_SAME_COMPONENT FYN -PIK3R1 IN_SAME_COMPONENT GAB1 -PIK3R1 IN_SAME_COMPONENT GAB2 -PIK3R1 IN_SAME_COMPONENT GNG2 -PIK3R1 IN_SAME_COMPONENT GSN -PIK3R1 IN_SAME_COMPONENT IL1B -PIK3R1 IN_SAME_COMPONENT IL1R1 -PIK3R1 IN_SAME_COMPONENT IL2 -PIK3R1 IN_SAME_COMPONENT IL2RA -PIK3R1 IN_SAME_COMPONENT IL2RB -PIK3R1 IN_SAME_COMPONENT IL2RG -PIK3R1 IN_SAME_COMPONENT IL3 -PIK3R1 IN_SAME_COMPONENT IL3RA -PIK3R1 IN_SAME_COMPONENT INPP5D -PIK3R1 IN_SAME_COMPONENT IRS2 -PIK3R1 IN_SAME_COMPONENT ITGA6 -PIK3R1 IN_SAME_COMPONENT JAK1 -PIK3R1 IN_SAME_COMPONENT JAK2 -PIK3R1 IN_SAME_COMPONENT JAK3 -PIK3R1 IN_SAME_COMPONENT LCK -PIK3R1 IN_SAME_COMPONENT NFKBIA -PIK3R1 IN_SAME_COMPONENT PELP1 -PIK3R1 IN_SAME_COMPONENT PIK3CA -PIK3R1 IN_SAME_COMPONENT PIK3CB -PIK3R1 IN_SAME_COMPONENT PTPN11 -PIK3R1 IN_SAME_COMPONENT RELN -PIK3R1 IN_SAME_COMPONENT SHC1 -PIK3R1 IN_SAME_COMPONENT SOS1 -PIK3R1 IN_SAME_COMPONENT SRC -PIK3R1 IN_SAME_COMPONENT VLDLR -PIK3R1 IN_SAME_COMPONENT YWHAZ -PIK3R1 INTERACTS_WITH LYN -PIK3R1 METABOLIC_CATALYSIS BCL2L1 -PIK3R1 METABOLIC_CATALYSIS CCND1 -PIK3R1 METABOLIC_CATALYSIS CCND3 -PIK3R1 METABOLIC_CATALYSIS PLAU -PIK3R1 REACTS_WITH AGAP2 -PIK3R1 REACTS_WITH AR -PIK3R1 REACTS_WITH CD19 -PIK3R1 REACTS_WITH CDH1 -PIK3R1 REACTS_WITH CSF2 -PIK3R1 REACTS_WITH CSF2RA -PIK3R1 REACTS_WITH CSF2RB -PIK3R1 REACTS_WITH DAB1 -PIK3R1 REACTS_WITH EFNA1 -PIK3R1 REACTS_WITH EGFR -PIK3R1 REACTS_WITH EPB41L1 -PIK3R1 REACTS_WITH EPHA2 -PIK3R1 REACTS_WITH ESR1 -PIK3R1 REACTS_WITH FYN -PIK3R1 REACTS_WITH GAB1 -PIK3R1 REACTS_WITH GAB2 -PIK3R1 REACTS_WITH GNG2 -PIK3R1 REACTS_WITH GSN -PIK3R1 REACTS_WITH IL1B -PIK3R1 REACTS_WITH IL1R1 -PIK3R1 REACTS_WITH IL2 -PIK3R1 REACTS_WITH IL2RA -PIK3R1 REACTS_WITH IL2RB -PIK3R1 REACTS_WITH IL2RG -PIK3R1 REACTS_WITH IL3 -PIK3R1 REACTS_WITH IL3RA -PIK3R1 REACTS_WITH INPP5D -PIK3R1 REACTS_WITH IRS2 -PIK3R1 REACTS_WITH ITGA6 -PIK3R1 REACTS_WITH ITGB4 -PIK3R1 REACTS_WITH JAK1 -PIK3R1 REACTS_WITH JAK2 -PIK3R1 REACTS_WITH JAK3 -PIK3R1 REACTS_WITH LCK -PIK3R1 REACTS_WITH NFKB1 -PIK3R1 REACTS_WITH NFKBIA -PIK3R1 REACTS_WITH PELP1 -PIK3R1 REACTS_WITH PIK3C2B -PIK3R1 REACTS_WITH PIK3CA -PIK3R1 REACTS_WITH PIK3CB -PIK3R1 REACTS_WITH PIK3R1 -PIK3R1 REACTS_WITH PTPN11 -PIK3R1 REACTS_WITH RELA -PIK3R1 REACTS_WITH RELN -PIK3R1 REACTS_WITH SHC1 -PIK3R1 REACTS_WITH SOS1 -PIK3R1 REACTS_WITH SRC -PIK3R1 REACTS_WITH VLDLR -PIK3R1 REACTS_WITH YWHAZ -PIK3R1 STATE_CHANGE AKT1 -PIK3R1 STATE_CHANGE BCAR1 -PIK3R1 STATE_CHANGE BTK -PIK3R1 STATE_CHANGE CRK -PIK3R1 STATE_CHANGE DAPP1 -PIK3R1 STATE_CHANGE MTOR -PIK3R1 STATE_CHANGE NFKB1 -PIK3R1 STATE_CHANGE NGF -PIK3R1 STATE_CHANGE PDPK1 -PIK3R1 STATE_CHANGE PRKCD -PIK3R1 STATE_CHANGE PRKCZ -PIK3R1 STATE_CHANGE PXN -PIK3R1 STATE_CHANGE RAC1 -PIK3R1 STATE_CHANGE RELA -PIK3R1 STATE_CHANGE RHOA -PIK3R1 STATE_CHANGE RPS6KB1 -PIK3R1 STATE_CHANGE SGMS1 -PIK3R1 STATE_CHANGE SMPD1 -PIK3R1 STATE_CHANGE STAT3 -PIK3R1 STATE_CHANGE TIAM1 -PIK3R1 STATE_CHANGE TRPV1 -PIK3R1 STATE_CHANGE UGCG -PIK3R1 STATE_CHANGE VAV2 -PIK3R6 IN_SAME_COMPONENT CBL -PIK3R6 IN_SAME_COMPONENT GNG2 -PIK3R6 IN_SAME_COMPONENT PIK3CG -PIK3R6 REACTS_WITH CBL -PIK3R6 REACTS_WITH GNG2 -PIK3R6 REACTS_WITH PIK3CG -PIK3R6 REACTS_WITH PIK3R6 -PIM1 IN_SAME_COMPONENT MAX -PIM1 IN_SAME_COMPONENT MYB -PIM1 IN_SAME_COMPONENT MYC -PIM1 IN_SAME_COMPONENT SND1 -PIM1 METABOLIC_CATALYSIS FOSL1 -PIM1 METABOLIC_CATALYSIS ID2 -PIM1 METABOLIC_CATALYSIS LECT2 -PIM1 REACTS_WITH MAX -PIM1 REACTS_WITH MYB -PIM1 REACTS_WITH MYC -PIM1 REACTS_WITH PIM1 -PIM1 REACTS_WITH SND1 -PIM1 STATE_CHANGE NFATC1 -PIN1 CO_CONTROL MDM2 -PIN1 CO_CONTROL PPP2CA -PIN1 CO_CONTROL PPP2R1A -PIN1 CO_CONTROL PPP2R2B -PIN1 CO_CONTROL UBE2D1 -PIN1 IN_SAME_COMPONENT AXIN1 -PIN1 IN_SAME_COMPONENT GSK3B -PIN1 IN_SAME_COMPONENT PPP2CA -PIN1 IN_SAME_COMPONENT PPP2R5A -PIN1 IN_SAME_COMPONENT TP53 -PIN1 REACTS_WITH PIN1 -PIN1 REACTS_WITH TP53 -PIN1 STATE_CHANGE MAX -PIN1 STATE_CHANGE MYC -PIN1 STATE_CHANGE RAF1 -PINX1 IN_SAME_COMPONENT DKC1 -PINX1 IN_SAME_COMPONENT HSP90AA1 -PINX1 IN_SAME_COMPONENT PTGES3 -PINX1 IN_SAME_COMPONENT TERT -PINX1 REACTS_WITH DKC1 -PINX1 REACTS_WITH HSP90AA1 -PINX1 REACTS_WITH PINX1 -PINX1 REACTS_WITH PTGES3 -PINX1 REACTS_WITH TERT -PIP5K1C IN_SAME_COMPONENT AP1M1 -PIP5K1C IN_SAME_COMPONENT TLN1 -PIP5K1C REACTS_WITH AP1M1 -PIP5K1C REACTS_WITH PIP5K1C -PIP5K1C REACTS_WITH TLN1 -PIP5K1C STATE_CHANGE CDH1 -PIP5K1C STATE_CHANGE CTNNB1 -PIP5K1C STATE_CHANGE TLN1 -PITX2 IN_SAME_COMPONENT CTNNB1 -PITX2 IN_SAME_COMPONENT HDAC1 -PITX2 IN_SAME_COMPONENT LEF1 -PITX2 METABOLIC_CATALYSIS CCND2 -PITX2 METABOLIC_CATALYSIS LEF1 -PITX2 REACTS_WITH CTNNB1 -PITX2 REACTS_WITH HDAC1 -PITX2 REACTS_WITH LEF1 -PITX2 REACTS_WITH PITX2 -PKN1 STATE_CHANGE AR -PKN1 STATE_CHANGE MLTK -PKN1 STATE_CHANGE NCOA2 -PLA2G1B INTERACTS_WITH PLA2G4A -PLA2G2A IN_SAME_COMPONENT GPC1 -PLA2G2A REACTS_WITH GPC1 -PLA2G2A REACTS_WITH PLA2G2A -PLA2G4A INTERACTS_WITH PLA2G1B -PLA2G4A INTERACTS_WITH PRKCB -PLA2G7 IN_SAME_COMPONENT PAFAH1B1 -PLA2G7 REACTS_WITH PAFAH1B1 -PLA2G7 REACTS_WITH PLA2G7 -PLAT IN_SAME_COMPONENT ITGAM -PLAT IN_SAME_COMPONENT ITGB2 -PLAT IN_SAME_COMPONENT LRP1 -PLAT REACTS_WITH ITGAM -PLAT REACTS_WITH ITGB2 -PLAT REACTS_WITH LRP1 -PLAT REACTS_WITH PLAT -PLAU CO_CONTROL ITGA3 -PLAU CO_CONTROL ITGB1 -PLAU IN_SAME_COMPONENT FGA -PLAU IN_SAME_COMPONENT FGB -PLAU IN_SAME_COMPONENT FGG -PLAU IN_SAME_COMPONENT FN1 -PLAU IN_SAME_COMPONENT ITGA3 -PLAU IN_SAME_COMPONENT ITGA5 -PLAU IN_SAME_COMPONENT ITGAM -PLAU IN_SAME_COMPONENT ITGAV -PLAU IN_SAME_COMPONENT ITGB1 -PLAU IN_SAME_COMPONENT ITGB2 -PLAU IN_SAME_COMPONENT ITGB3 -PLAU IN_SAME_COMPONENT ITGB5 -PLAU IN_SAME_COMPONENT NCL -PLAU IN_SAME_COMPONENT PLAUR -PLAU IN_SAME_COMPONENT PLG -PLAU IN_SAME_COMPONENT SERPINE1 -PLAU IN_SAME_COMPONENT VTN -PLAU INTERACTS_WITH HGF -PLAU INTERACTS_WITH MET -PLAU INTERACTS_WITH MMP2 -PLAU INTERACTS_WITH PLAUR -PLAUR CO_CONTROL ITGA3 -PLAUR CO_CONTROL ITGB1 -PLAU REACTS_WITH FGA -PLAU REACTS_WITH FGB -PLAU REACTS_WITH FGG -PLAU REACTS_WITH FN1 -PLAU REACTS_WITH ITGA3 -PLAU REACTS_WITH ITGA5 -PLAU REACTS_WITH ITGAM -PLAU REACTS_WITH ITGAV -PLAU REACTS_WITH ITGB1 -PLAU REACTS_WITH ITGB2 -PLAU REACTS_WITH ITGB3 -PLAU REACTS_WITH ITGB5 -PLAU REACTS_WITH MMP9 -PLAU REACTS_WITH NCL -PLAU REACTS_WITH NFKB1 -PLAU REACTS_WITH PDGFRB -PLAU REACTS_WITH PLAU -PLAU REACTS_WITH PLAUR -PLAU REACTS_WITH PLG -PLAU REACTS_WITH RELA -PLAU REACTS_WITH SERPINE1 -PLAU REACTS_WITH VTN -PLAUR IN_SAME_COMPONENT FGA -PLAUR IN_SAME_COMPONENT FGB -PLAUR IN_SAME_COMPONENT FGG -PLAUR IN_SAME_COMPONENT FN1 -PLAUR IN_SAME_COMPONENT ITGA3 -PLAUR IN_SAME_COMPONENT ITGA5 -PLAUR IN_SAME_COMPONENT ITGAM -PLAUR IN_SAME_COMPONENT ITGAV -PLAUR IN_SAME_COMPONENT ITGB1 -PLAUR IN_SAME_COMPONENT ITGB2 -PLAUR IN_SAME_COMPONENT ITGB3 -PLAUR IN_SAME_COMPONENT ITGB5 -PLAUR IN_SAME_COMPONENT NCL -PLAUR IN_SAME_COMPONENT PLAU -PLAUR IN_SAME_COMPONENT SERPINE1 -PLAUR IN_SAME_COMPONENT VTN -PLAUR INTERACTS_WITH HGF -PLAUR INTERACTS_WITH MET -PLAUR INTERACTS_WITH PLAU -PLAUR REACTS_WITH FGA -PLAUR REACTS_WITH FGB -PLAUR REACTS_WITH FGG -PLAUR REACTS_WITH FN1 -PLAUR REACTS_WITH ITGA3 -PLAUR REACTS_WITH ITGA5 -PLAUR REACTS_WITH ITGAM -PLAUR REACTS_WITH ITGAV -PLAUR REACTS_WITH ITGB1 -PLAUR REACTS_WITH ITGB2 -PLAUR REACTS_WITH ITGB3 -PLAUR REACTS_WITH ITGB5 -PLAUR REACTS_WITH NCL -PLAUR REACTS_WITH PDGFRB -PLAUR REACTS_WITH PLAU -PLAUR REACTS_WITH PLAUR -PLAUR REACTS_WITH SERPINE1 -PLAUR REACTS_WITH VTN -PLAUR STATE_CHANGE HGF -PLAUR STATE_CHANGE PDGFD -PLAUR STATE_CHANGE PLG -PLAUR STATE_CHANGE SRC -PLAU STATE_CHANGE HGF -PLAU STATE_CHANGE PDGFD -PLAU STATE_CHANGE PLAUR -PLAU STATE_CHANGE PLG -PLAU STATE_CHANGE SRC -PLCB2 IN_SAME_COMPONENT SNCA -PLCB2 REACTS_WITH PLCB2 -PLCB2 REACTS_WITH SNCA -PLCG1 CO_CONTROL GRAP2 -PLCG1 CO_CONTROL ITK -PLCG1 CO_CONTROL LCP2 -PLCG1 CO_CONTROL PLCG1 -PLCG1 CO_CONTROL SRC -PLCG1 CO_CONTROL VAV1 -PLCG1 IN_SAME_COMPONENT ARHGEF7 -PLCG1 IN_SAME_COMPONENT EGF -PLCG1 IN_SAME_COMPONENT EGFR -PLCG1 IN_SAME_COMPONENT GIT1 -PLCG1 IN_SAME_COMPONENT GRAP2 -PLCG1 IN_SAME_COMPONENT ITK -PLCG1 IN_SAME_COMPONENT KIRREL -PLCG1 IN_SAME_COMPONENT LAT -PLCG1 IN_SAME_COMPONENT LAT2 -PLCG1 IN_SAME_COMPONENT LCP2 -PLCG1 IN_SAME_COMPONENT NGF -PLCG1 IN_SAME_COMPONENT NPHS1 -PLCG1 IN_SAME_COMPONENT NPHS2 -PLCG1 IN_SAME_COMPONENT PDGFB -PLCG1 IN_SAME_COMPONENT PDGFRB -PLCG1 IN_SAME_COMPONENT TRPV1 -PLCG1 IN_SAME_COMPONENT VAV1 -PLCG1 METABOLIC_CATALYSIS EGR1 -PLCG1 REACTS_WITH CBL -PLCG1 REACTS_WITH EGF -PLCG1 REACTS_WITH EGFR -PLCG1 REACTS_WITH GRAP2 -PLCG1 REACTS_WITH ITK -PLCG1 REACTS_WITH KIRREL -PLCG1 REACTS_WITH LAT -PLCG1 REACTS_WITH LAT2 -PLCG1 REACTS_WITH LCP2 -PLCG1 REACTS_WITH NGF -PLCG1 REACTS_WITH NPHS1 -PLCG1 REACTS_WITH NPHS2 -PLCG1 REACTS_WITH PDGFB -PLCG1 REACTS_WITH PDGFRB -PLCG1 REACTS_WITH PLCG1 -PLCG1 REACTS_WITH TRPV1 -PLCG1 REACTS_WITH VAV1 -PLCG1 STATE_CHANGE ABL1 -PLCG1 STATE_CHANGE CAMK2A -PLCG1 STATE_CHANGE CAMK4 -PLCG1 STATE_CHANGE CDC42 -PLCG1 STATE_CHANGE CREB1 -PLCG1 STATE_CHANGE GSN -PLCG1 STATE_CHANGE PLCG1 -PLCG1 STATE_CHANGE SPHK1 -PLCG1 STATE_CHANGE STAT5A -PLCG2 CO_CONTROL INPP5D -PLCG2 IN_SAME_COMPONENT BLNK -PLCG2 IN_SAME_COMPONENT BTK -PLCG2 IN_SAME_COMPONENT CD72 -PLCG2 IN_SAME_COMPONENT CD79A -PLCG2 IN_SAME_COMPONENT CD79B -PLCG2 IN_SAME_COMPONENT LYN -PLCG2 IN_SAME_COMPONENT SYK -PLCG2 REACTS_WITH BLNK -PLCG2 REACTS_WITH BTK -PLCG2 REACTS_WITH CD72 -PLCG2 REACTS_WITH CD79A -PLCG2 REACTS_WITH CD79B -PLCG2 REACTS_WITH LYN -PLCG2 REACTS_WITH PLCG2 -PLCG2 REACTS_WITH PTPN6 -PLCG2 REACTS_WITH SYK -PLD1 IN_SAME_COMPONENT SNCA -PLD1 REACTS_WITH PLD1 -PLD1 REACTS_WITH SNCA -PLD2 IN_SAME_COMPONENT SNCA -PLD2 REACTS_WITH PLD2 -PLD2 REACTS_WITH RHOA -PLD2 REACTS_WITH SNCA -PLEKHA7 STATE_CHANGE KIAA1543 -PLEKHG6 STATE_CHANGE RHOA -PLG IN_SAME_COMPONENT ITGAM -PLG IN_SAME_COMPONENT ITGB2 -PLG IN_SAME_COMPONENT PLAU -PLG REACTS_WITH ITGAM -PLG REACTS_WITH ITGB2 -PLG REACTS_WITH PLAU -PLG REACTS_WITH PLG -PLG STATE_CHANGE BDNF -PLG STATE_CHANGE MMP12 -PLG STATE_CHANGE MMP13 -PLG STATE_CHANGE MMP3 -PLG STATE_CHANGE MMP9 -PLG STATE_CHANGE NGF -PLG STATE_CHANGE PLAU -PLG STATE_CHANGE PLAUR -PLG STATE_CHANGE SDC4 -PLG STATE_CHANGE TGFB1 -PLK1 CO_CONTROL CCNB1 -PLK1 CO_CONTROL CDK1 -PLK1 CO_CONTROL PPP2CA -PLK1 CO_CONTROL PPP2R1A -PLK1 CO_CONTROL RHOA -PLK1 IN_SAME_COMPONENT ERCC6L -PLK1 IN_SAME_COMPONENT GOLGA2 -PLK1 IN_SAME_COMPONENT GORASP1 -PLK1 IN_SAME_COMPONENT KIF20A -PLK1 IN_SAME_COMPONENT MLF1IP -PLK1 IN_SAME_COMPONENT RAB1A -PLK1 REACTS_WITH ERCC6L -PLK1 REACTS_WITH GOLGA2 -PLK1 REACTS_WITH GORASP1 -PLK1 REACTS_WITH KIF20A -PLK1 REACTS_WITH MLF1IP -PLK1 REACTS_WITH PLK1 -PLK1 REACTS_WITH RAB1A -PLK1 STATE_CHANGE AURKA -PLK1 STATE_CHANGE BORA -PLK1 STATE_CHANGE BUB1B -PLK1 STATE_CHANGE CDC20 -PLK1 STATE_CHANGE CDC25C -PLK1 STATE_CHANGE CENPE -PLK1 STATE_CHANGE CLSPN -PLK1 STATE_CHANGE ECT2 -PLK1 STATE_CHANGE FBXO5 -PLK1 STATE_CHANGE KIF2A -PLK1 STATE_CHANGE NDC80 -PLK1 STATE_CHANGE NINL -PLK1 STATE_CHANGE NUDC -PLK1 STATE_CHANGE PLK1S1 -PLK1 STATE_CHANGE ROCK2 -PLK1 STATE_CHANGE SGOL1 -PLK1 STATE_CHANGE SPC24 -PLK1 STATE_CHANGE STAG2 -PLK1 STATE_CHANGE TPT1 -PLK1 STATE_CHANGE TPX2 -PLK1 STATE_CHANGE TUBG1 -PLK1 STATE_CHANGE WEE1 -PLK3 METABOLIC_CATALYSIS CCNE1 -PLK3 STATE_CHANGE CDC25C -PLK3 STATE_CHANGE CHEK2 -PLK3 STATE_CHANGE TP53 -PMP22 IN_SAME_COMPONENT ITGA6 -PMP22 IN_SAME_COMPONENT ITGB4 -PMP22 REACTS_WITH ITGA6 -PMP22 REACTS_WITH ITGB4 -PMP22 REACTS_WITH PMP22 -POLDIP3 IN_SAME_COMPONENT RPS6KB1 -POLDIP3 REACTS_WITH POLDIP3 -POLDIP3 REACTS_WITH RPS6KB1 -POMC IN_SAME_COMPONENT MC4R -POMC REACTS_WITH AGRP -POMC REACTS_WITH MC4R -POMC REACTS_WITH POMC -POMC REACTS_WITH SDC3 -POT1 IN_SAME_COMPONENT ACD -POT1 IN_SAME_COMPONENT TERF1 -POT1 IN_SAME_COMPONENT TINF2 -POT1 REACTS_WITH ACD -POT1 REACTS_WITH POT1 -POT1 REACTS_WITH TERF1 -POT1 REACTS_WITH TERF2 -POT1 REACTS_WITH TERF2IP -POT1 REACTS_WITH TINF2 -POU1F1 METABOLIC_CATALYSIS PRL -POU2F1 CO_CONTROL AR -POU2F1 CO_CONTROL ESR1 -POU2F1 CO_CONTROL FOS -POU2F1 CO_CONTROL FOXA1 -POU2F1 CO_CONTROL FOXO1 -POU2F1 CO_CONTROL GATA2 -POU2F1 CO_CONTROL JUN -POU2F1 CO_CONTROL NCOA2 -POU2F1 CO_CONTROL PBX1 -POU2F1 CO_CONTROL REL -POU2F1 CO_CONTROL SP1 -POU2F1 IN_SAME_COMPONENT ATF2 -POU2F1 IN_SAME_COMPONENT BRCA1 -POU2F1 IN_SAME_COMPONENT NF1 -POU2F1 METABOLIC_CATALYSIS GADD45A -POU2F1 METABOLIC_CATALYSIS IL3 -POU2F1 METABOLIC_CATALYSIS KLK3 -POU2F1 METABOLIC_CATALYSIS PDE9A -POU2F1 METABOLIC_CATALYSIS PRL -POU2F1 METABOLIC_CATALYSIS TMPRSS2 -POU2F1 REACTS_WITH ATF2 -POU2F1 REACTS_WITH BRCA1 -POU2F1 REACTS_WITH NF1 -POU2F1 REACTS_WITH POU2F1 -POU2F2 REACTS_WITH BCL2A1 -POU4F1 CO_CONTROL HDAC2 -POU4F1 CO_CONTROL JMY -POU4F1 CO_CONTROL POU4F2 -POU4F1 CO_CONTROL SMARCA4 -POU4F1 CO_CONTROL SP1 -POU4F1 CO_CONTROL TADA2B -POU4F1 CO_CONTROL TAF9 -POU4F1 CO_CONTROL TP53 -POU4F1 CO_CONTROL ZNF385A -POU4F1 METABOLIC_CATALYSIS BAX -POU4F1 METABOLIC_CATALYSIS BCL2 -POU4F1 METABOLIC_CATALYSIS CDKN1A -POU4F1 METABOLIC_CATALYSIS PMAIP1 -POU4F2 CO_CONTROL POU4F1 -POU4F2 CO_CONTROL SP1 -POU4F2 CO_CONTROL TP53 -POU4F2 METABOLIC_CATALYSIS BAX -PPARGC1A IN_SAME_COMPONENT MLST8 -PPARGC1A IN_SAME_COMPONENT MTOR -PPARGC1A IN_SAME_COMPONENT RPTOR -PPARGC1A IN_SAME_COMPONENT SIRT1 -PPARGC1A IN_SAME_COMPONENT YY1 -PPARGC1A METABOLIC_CATALYSIS CYCS -PPARGC1A METABOLIC_CATALYSIS PPARGC1A -PPARGC1A REACTS_WITH MLST8 -PPARGC1A REACTS_WITH MTOR -PPARGC1A REACTS_WITH PPARGC1A -PPARGC1A REACTS_WITH RPTOR -PPARGC1A REACTS_WITH SIRT1 -PPARGC1A REACTS_WITH YY1 -PPARG CO_CONTROL FOS -PPARG CO_CONTROL JUN -PPARG IN_SAME_COMPONENT CHD7 -PPARG IN_SAME_COMPONENT HDAC3 -PPARG IN_SAME_COMPONENT NLK -PPARG IN_SAME_COMPONENT RB1 -PPARG IN_SAME_COMPONENT SETDB1 -PPARG METABOLIC_CATALYSIS IL2 -PPARG METABOLIC_CATALYSIS IL4 -PPARG REACTS_WITH CHD7 -PPARG REACTS_WITH FOS -PPARG REACTS_WITH HDAC3 -PPARG REACTS_WITH JUN -PPARG REACTS_WITH NLK -PPARG REACTS_WITH PPARG -PPARG REACTS_WITH RB1 -PPARG REACTS_WITH SETDB1 -PPIB STATE_CHANGE BSG -PPIB STATE_CHANGE SDC1 -PPID IN_SAME_COMPONENT MYB -PPID REACTS_WITH MYB -PPID REACTS_WITH PPID -PPM1A STATE_CHANGE SMAD1 -PPM1A STATE_CHANGE SMAD2 -PPM1A STATE_CHANGE SMAD5 -PPM1A STATE_CHANGE SMAD9 -PPM1D STATE_CHANGE MDM2 -PPP1CA CO_CONTROL ACVRL1 -PPP1CA CO_CONTROL CAV1 -PPP1CA CO_CONTROL TGFB1 -PPP1CA CO_CONTROL TGFBR1 -PPP1CA CO_CONTROL TGFBR2 -PPP1CA IN_SAME_COMPONENT ACVRL1 -PPP1CA IN_SAME_COMPONENT BMPR2 -PPP1CA IN_SAME_COMPONENT PPP1R15A -PPP1CA IN_SAME_COMPONENT SMAD7 -PPP1CA IN_SAME_COMPONENT TGFB1 -PPP1CA IN_SAME_COMPONENT TGFBR1 -PPP1CA IN_SAME_COMPONENT TGFBR2 -PPP1CA IN_SAME_COMPONENT ZFYVE16 -PPP1CA REACTS_WITH ACVRL1 -PPP1CA REACTS_WITH BMPR2 -PPP1CA REACTS_WITH PPP1CA -PPP1CA REACTS_WITH PPP1R15A -PPP1CA REACTS_WITH SMAD1 -PPP1CA REACTS_WITH SMAD7 -PPP1CA REACTS_WITH TGFB1 -PPP1CA REACTS_WITH TGFBR1 -PPP1CA REACTS_WITH TGFBR2 -PPP1CA REACTS_WITH ZFYVE16 -PPP1CB IN_SAME_COMPONENT PPP1R12A -PPP1CB STATE_CHANGE PLK1 -PPP1CC IN_SAME_COMPONENT AURKB -PPP1CC IN_SAME_COMPONENT PPP1R3A -PPP1CC REACTS_WITH AURKB -PPP1CC REACTS_WITH GSK3B -PPP1CC REACTS_WITH PPP1CC -PPP1CC REACTS_WITH PPP1R3A -PPP1CC REACTS_WITH PPP2R5D -PPP1R12A IN_SAME_COMPONENT PPP1CB -PPP1R12A REACTS_WITH PPP1R12A -PPP1R12A STATE_CHANGE MYL2 -PPP1R12A STATE_CHANGE PLK1 -PPP1R13L CO_CONTROL DYRK2 -PPP1R13L CO_CONTROL HIPK2 -PPP1R13L CO_CONTROL MAPK14 -PPP1R13L CO_CONTROL PRKCD -PPP1R13L STATE_CHANGE TP53 -PPP1R15A IN_SAME_COMPONENT BMPR2 -PPP1R15A IN_SAME_COMPONENT PPP1CA -PPP1R15A IN_SAME_COMPONENT SMAD7 -PPP1R15A IN_SAME_COMPONENT TGFBR1 -PPP1R15A IN_SAME_COMPONENT TGFBR2 -PPP1R15A IN_SAME_COMPONENT ZFYVE16 -PPP1R15A REACTS_WITH BMPR2 -PPP1R15A REACTS_WITH PPP1CA -PPP1R15A REACTS_WITH PPP1R15A -PPP1R15A REACTS_WITH SMAD1 -PPP1R15A REACTS_WITH SMAD7 -PPP1R15A REACTS_WITH TGFBR1 -PPP1R15A REACTS_WITH TGFBR2 -PPP1R15A REACTS_WITH ZFYVE16 -PPP1R3A IN_SAME_COMPONENT PPP1CC -PPP1R3A REACTS_WITH GSK3B -PPP1R3A REACTS_WITH PPP1CC -PPP1R3A REACTS_WITH PPP1R3A -PPP2CA CO_CONTROL KSR1 -PPP2CA CO_CONTROL PIN1 -PPP2CA CO_CONTROL PLK1 -PPP2CA CO_CONTROL PPP2CB -PPP2CA CO_CONTROL PPP2R2A -PPP2CA CO_CONTROL TGFBR1 -PPP2CA CO_CONTROL TGFBR2 -PPP2CA IN_SAME_COMPONENT AXIN1 -PPP2CA IN_SAME_COMPONENT CCNG1 -PPP2CA IN_SAME_COMPONENT GSK3B -PPP2CA IN_SAME_COMPONENT PIN1 -PPP2CA IN_SAME_COMPONENT PPP2R1A -PPP2CA IN_SAME_COMPONENT PPP2R2A -PPP2CA IN_SAME_COMPONENT PPP2R2B -PPP2CA IN_SAME_COMPONENT PPP2R3B -PPP2CA IN_SAME_COMPONENT PPP2R4 -PPP2CA IN_SAME_COMPONENT PPP2R5A -PPP2CA REACTS_WITH CCNG1 -PPP2CA REACTS_WITH PPP2CA -PPP2CA REACTS_WITH PPP2R1A -PPP2CA REACTS_WITH PPP2R2A -PPP2CA REACTS_WITH PPP2R4 -PPP2CA STATE_CHANGE CHEK1 -PPP2CA STATE_CHANGE CXCR2 -PPP2CA STATE_CHANGE IL8 -PPP2CA STATE_CHANGE KSR1 -PPP2CA STATE_CHANGE MAX -PPP2CA STATE_CHANGE MDM2 -PPP2CA STATE_CHANGE MYC -PPP2CA STATE_CHANGE RAF1 -PPP2CA STATE_CHANGE RB1 -PPP2CA STATE_CHANGE RPS6KB1 -PPP2CA STATE_CHANGE SGOL1 -PPP2CB CO_CONTROL PPP2CA -PPP2CB CO_CONTROL PPP2R2A -PPP2CB CO_CONTROL TGFBR1 -PPP2CB CO_CONTROL TGFBR2 -PPP2CB STATE_CHANGE RPS6KB1 -PPP2R1A CO_CONTROL KSR1 -PPP2R1A CO_CONTROL PIN1 -PPP2R1A CO_CONTROL PLK1 -PPP2R1A IN_SAME_COMPONENT PPP2CA -PPP2R1A IN_SAME_COMPONENT PPP2R2A -PPP2R1A IN_SAME_COMPONENT PPP2R2B -PPP2R1A REACTS_WITH PPP2CA -PPP2R1A REACTS_WITH PPP2R1A -PPP2R1A REACTS_WITH PPP2R2A -PPP2R1A STATE_CHANGE CHEK1 -PPP2R1A STATE_CHANGE CXCR2 -PPP2R1A STATE_CHANGE IL8 -PPP2R1A STATE_CHANGE KSR1 -PPP2R1A STATE_CHANGE RAF1 -PPP2R1A STATE_CHANGE SGOL1 -PPP2R2A CO_CONTROL PPP2CA -PPP2R2A CO_CONTROL PPP2CB -PPP2R2A IN_SAME_COMPONENT PPP2CA -PPP2R2A IN_SAME_COMPONENT PPP2R1A -PPP2R2A IN_SAME_COMPONENT TGFBR1 -PPP2R2A IN_SAME_COMPONENT TGFBR2 -PPP2R2A REACTS_WITH PPP2CA -PPP2R2A REACTS_WITH PPP2R1A -PPP2R2A REACTS_WITH PPP2R2A -PPP2R2A REACTS_WITH TGFBR1 -PPP2R2A REACTS_WITH TGFBR2 -PPP2R2A STATE_CHANGE KSR1 -PPP2R2A STATE_CHANGE RAF1 -PPP2R2A STATE_CHANGE RPS6KB1 -PPP2R2B CO_CONTROL KSR1 -PPP2R2B CO_CONTROL PIN1 -PPP2R2B IN_SAME_COMPONENT PPP2CA -PPP2R2B IN_SAME_COMPONENT PPP2R1A -PPP2R2B STATE_CHANGE CHEK1 -PPP2R2B STATE_CHANGE KSR1 -PPP2R2B STATE_CHANGE RAF1 -PPP2R3B IN_SAME_COMPONENT PPP2CA -PPP2R3B STATE_CHANGE RB1 -PPP2R4 IN_SAME_COMPONENT CCNG1 -PPP2R4 IN_SAME_COMPONENT PPP2CA -PPP2R4 REACTS_WITH CCNG1 -PPP2R4 REACTS_WITH PPP2CA -PPP2R4 REACTS_WITH PPP2R4 -PPP2R4 STATE_CHANGE MDM2 -PPP2R5A IN_SAME_COMPONENT AXIN1 -PPP2R5A IN_SAME_COMPONENT GSK3B -PPP2R5A IN_SAME_COMPONENT PIN1 -PPP2R5A IN_SAME_COMPONENT PPP2CA -PPP2R5A REACTS_WITH GSK3B -PPP2R5A REACTS_WITH PPP2R5A -PPP2R5A STATE_CHANGE APC -PPP2R5A STATE_CHANGE AXIN1 -PPP2R5A STATE_CHANGE CTNNB1 -PPP2R5A STATE_CHANGE MAX -PPP2R5A STATE_CHANGE MYC -PPP2R5D IN_SAME_COMPONENT AURKA -PPP2R5D IN_SAME_COMPONENT AURKB -PPP2R5D REACTS_WITH AURKA -PPP2R5D REACTS_WITH AURKB -PPP2R5D REACTS_WITH PPP1CC -PPP2R5D REACTS_WITH PPP2R5D -PPP2R5D STATE_CHANGE APC -PPP2R5D STATE_CHANGE AXIN1 -PPP2R5D STATE_CHANGE CTNNB1 -PPP2R5D STATE_CHANGE MAP1B -PPP2R5D STATE_CHANGE TH -PPP3CA CO_CONTROL DAPP1 -PPP3CA CO_CONTROL VAV2 -PPP3CA IN_SAME_COMPONENT PPP3CB -PPP3CA IN_SAME_COMPONENT PPP3CC -PPP3CA STATE_CHANGE NFATC1 -PPP3CB CO_CONTROL DAPP1 -PPP3CB CO_CONTROL VAV2 -PPP3CB IN_SAME_COMPONENT PPP3CA -PPP3CB IN_SAME_COMPONENT PPP3CC -PPP3CB STATE_CHANGE NFATC1 -PPP3CB STATE_CHANGE NFATC4 -PPP3CC CO_CONTROL DAPP1 -PPP3CC CO_CONTROL VAV2 -PPP3CC IN_SAME_COMPONENT PPP3CA -PPP3CC IN_SAME_COMPONENT PPP3CB -PPP3CC STATE_CHANGE NFATC1 -PPP5C IN_SAME_COMPONENT FKBP5 -PPP5C IN_SAME_COMPONENT HSP90AA1 -PPP5C REACTS_WITH FKBP5 -PPP5C REACTS_WITH HSP90AA1 -PPP5C REACTS_WITH PPP5C -PPP5C STATE_CHANGE RAF1 -PRDX1 IN_SAME_COMPONENT AR -PRDX1 METABOLIC_CATALYSIS KLK3 -PRDX1 REACTS_WITH AR -PRDX1 REACTS_WITH PRDX1 -PREX1 STATE_CHANGE RAC1 -PREX2 STATE_CHANGE RAC1 -PRF1 STATE_CHANGE GZMB -PRKACA CO_CONTROL CSNK1A1 -PRKACA CO_CONTROL GSK3B -PRKACA CO_CONTROL MAPK14 -PRKACA CO_CONTROL RPS6KA5 -PRKACA CO_CONTROL SMO -PRKACA CO_CONTROL TGFB1 -PRKACA IN_SAME_COMPONENT AKAP5 -PRKACA IN_SAME_COMPONENT GAB1 -PRKACA IN_SAME_COMPONENT NOS3 -PRKACA IN_SAME_COMPONENT PRKACB -PRKACA IN_SAME_COMPONENT PRKAR1A -PRKACA IN_SAME_COMPONENT PRKAR1B -PRKACA IN_SAME_COMPONENT PTPN11 -PRKACA REACTS_WITH AKAP5 -PRKACA REACTS_WITH GAB1 -PRKACA REACTS_WITH KDR -PRKACA REACTS_WITH NOS3 -PRKACA REACTS_WITH PRKACA -PRKACA REACTS_WITH PTPN11 -PRKACA REACTS_WITH VEGFA -PRKACA STATE_CHANGE AURKA -PRKACA STATE_CHANGE BAD -PRKACA STATE_CHANGE CAB39 -PRKACA STATE_CHANGE CREB1 -PRKACA STATE_CHANGE ERBB2 -PRKACA STATE_CHANGE ERBB3 -PRKACA STATE_CHANGE FN1 -PRKACA STATE_CHANGE GDNF -PRKACA STATE_CHANGE GFRA1 -PRKACA STATE_CHANGE GLI2 -PRKACA STATE_CHANGE GLI3 -PRKACA STATE_CHANGE GNB5 -PRKACA STATE_CHANGE GNG2 -PRKACA STATE_CHANGE HDAC8 -PRKACA STATE_CHANGE HSP90AA1 -PRKACA STATE_CHANGE ITGA4 -PRKACA STATE_CHANGE ITGB1 -PRKACA STATE_CHANGE MAP2K6 -PRKACA STATE_CHANGE NF2 -PRKACA STATE_CHANGE NFATC1 -PRKACA STATE_CHANGE NFATC2 -PRKACA STATE_CHANGE NOS3 -PRKACA STATE_CHANGE PXN -PRKACA STATE_CHANGE RARA -PRKACA STATE_CHANGE SDC1 -PRKACA STATE_CHANGE SMG5 -PRKACA STATE_CHANGE STK11 -PRKACA STATE_CHANGE YWHAZ -PRKACB IN_SAME_COMPONENT PRKACA -PRKACB IN_SAME_COMPONENT PRKAR1A -PRKACB IN_SAME_COMPONENT PRKAR1B -PRKACB REACTS_WITH PRKACB -PRKACB STATE_CHANGE FN1 -PRKACB STATE_CHANGE ITGA4 -PRKACB STATE_CHANGE ITGB1 -PRKACB STATE_CHANGE PXN -PRKAR1A IN_SAME_COMPONENT PRKACA -PRKAR1A IN_SAME_COMPONENT PRKACB -PRKAR1A IN_SAME_COMPONENT PRKAR1B -PRKAR1A STATE_CHANGE FN1 -PRKAR1A STATE_CHANGE ITGA4 -PRKAR1A STATE_CHANGE ITGB1 -PRKAR1A STATE_CHANGE PXN -PRKAR1B IN_SAME_COMPONENT PRKACA -PRKAR1B IN_SAME_COMPONENT PRKACB -PRKAR1B IN_SAME_COMPONENT PRKAR1A -PRKAR1B STATE_CHANGE FN1 -PRKAR1B STATE_CHANGE ITGA4 -PRKAR1B STATE_CHANGE ITGB1 -PRKAR1B STATE_CHANGE PXN -PRKCA CO_CONTROL CHUK -PRKCA CO_CONTROL ERC1 -PRKCA CO_CONTROL FN1 -PRKCA CO_CONTROL IKBKB -PRKCA CO_CONTROL IKBKG -PRKCA CO_CONTROL ITGA5 -PRKCA CO_CONTROL ITGB1 -PRKCA CO_CONTROL SDC4 -PRKCA IN_SAME_COMPONENT CHUK -PRKCA IN_SAME_COMPONENT GDNF -PRKCA IN_SAME_COMPONENT GFRA1 -PRKCA IN_SAME_COMPONENT IKBKB -PRKCA IN_SAME_COMPONENT IKBKG -PRKCA IN_SAME_COMPONENT SDC4 -PRKCA INTERACTS_WITH ADAM12 -PRKCA INTERACTS_WITH RHOA -PRKCA INTERACTS_WITH SDC4 -PRKCA REACTS_WITH CHUK -PRKCA REACTS_WITH GDNF -PRKCA REACTS_WITH GFRA1 -PRKCA REACTS_WITH IKBKB -PRKCA REACTS_WITH IKBKG -PRKCA REACTS_WITH PRKCA -PRKCA REACTS_WITH SDC4 -PRKCA STATE_CHANGE ARHGDIA -PRKCA STATE_CHANGE ATF2 -PRKCA STATE_CHANGE ITGA6 -PRKCA STATE_CHANGE ITGB4 -PRKCA STATE_CHANGE NFKB1 -PRKCA STATE_CHANGE NFKBIA -PRKCA STATE_CHANGE PLD1 -PRKCA STATE_CHANGE RAB4A -PRKCA STATE_CHANGE RAC1 -PRKCA STATE_CHANGE RAF1 -PRKCA STATE_CHANGE RARA -PRKCA STATE_CHANGE RELA -PRKCA STATE_CHANGE RHOA -PRKCA STATE_CHANGE SDC4 -PRKCB CO_CONTROL MAP2K4 -PRKCB INTERACTS_WITH PLA2G4A -PRKCB STATE_CHANGE CHUK -PRKCB STATE_CHANGE IKBKB -PRKCB STATE_CHANGE IKBKG -PRKCB STATE_CHANGE MAPK8 -PRKCB STATE_CHANGE RAF1 -PRKCD CO_CONTROL IL6 -PRKCD CO_CONTROL IL6R -PRKCD CO_CONTROL IL6ST -PRKCD CO_CONTROL JAK1 -PRKCD CO_CONTROL PPP1R13L -PRKCD CO_CONTROL SOCS3 -PRKCD IN_SAME_COMPONENT BAD -PRKCD IN_SAME_COMPONENT MAPK3 -PRKCD IN_SAME_COMPONENT SDC2 -PRKCD IN_SAME_COMPONENT SNCA -PRKCD METABOLIC_CATALYSIS GLI2 -PRKCD REACTS_WITH BAD -PRKCD REACTS_WITH MAPK3 -PRKCD REACTS_WITH PRKCD -PRKCD REACTS_WITH SDC2 -PRKCD REACTS_WITH SNCA -PRKCD STATE_CHANGE CASP3 -PRKCD STATE_CHANGE LYN -PRKCD STATE_CHANGE MAP2K1 -PRKCD STATE_CHANGE MYLPF -PRKCD STATE_CHANGE NFKB1 -PRKCD STATE_CHANGE NFKBIA -PRKCD STATE_CHANGE NOS3 -PRKCD STATE_CHANGE RAF1 -PRKCD STATE_CHANGE RELA -PRKCD STATE_CHANGE SDC4 -PRKCD STATE_CHANGE STAT1 -PRKCD STATE_CHANGE STAT3 -PRKCD STATE_CHANGE TP53 -PRKCE IN_SAME_COMPONENT CDC42 -PRKCE IN_SAME_COMPONENT F2RL2 -PRKCE IN_SAME_COMPONENT PARD6A -PRKCE METABOLIC_CATALYSIS FASLG -PRKCE REACTS_WITH CDC42 -PRKCE REACTS_WITH F2RL2 -PRKCE REACTS_WITH PARD6A -PRKCE REACTS_WITH PRKCE -PRKCE STATE_CHANGE TIAM1 -PRKCG STATE_CHANGE RARA -PRKCQ CO_CONTROL EGR1 -PRKCQ CO_CONTROL EGR4 -PRKCQ CO_CONTROL FLNA -PRKCQ CO_CONTROL FOS -PRKCQ CO_CONTROL JUN -PRKCQ CO_CONTROL PDPK1 -PRKCQ CO_CONTROL PRKCQ -PRKCQ IN_SAME_COMPONENT FLNA -PRKCQ IN_SAME_COMPONENT PDPK1 -PRKCQ IN_SAME_COMPONENT STK39 -PRKCQ METABOLIC_CATALYSIS FASLG -PRKCQ METABOLIC_CATALYSIS TNF -PRKCQ REACTS_WITH FLNA -PRKCQ REACTS_WITH PDPK1 -PRKCQ REACTS_WITH PRKCQ -PRKCQ REACTS_WITH STK39 -PRKCQ STATE_CHANGE MAPK8 -PRKCQ STATE_CHANGE RASGRP1 -PRKCZ CO_CONTROL CALM1 -PRKCZ CO_CONTROL FLNA -PRKCZ CO_CONTROL FZD2 -PRKCZ CO_CONTROL MAP2K4 -PRKCZ CO_CONTROL ROR2 -PRKCZ CO_CONTROL WNT5A -PRKCZ IN_SAME_COMPONENT CDC42 -PRKCZ IN_SAME_COMPONENT F2RL2 -PRKCZ IN_SAME_COMPONENT PARD6A -PRKCZ IN_SAME_COMPONENT PAWR -PRKCZ INTERACTS_WITH AKT1 -PRKCZ INTERACTS_WITH ICAM1 -PRKCZ INTERACTS_WITH ITGAM -PRKCZ INTERACTS_WITH ITGB2 -PRKCZ METABOLIC_CATALYSIS MMP9 -PRKCZ REACTS_WITH CDC42 -PRKCZ REACTS_WITH F2RL2 -PRKCZ REACTS_WITH PARD6A -PRKCZ REACTS_WITH PAWR -PRKCZ REACTS_WITH PRKCZ -PRKCZ STATE_CHANGE AKT1 -PRKCZ STATE_CHANGE DLG1 -PRKCZ STATE_CHANGE GSK3B -PRKCZ STATE_CHANGE MAPK8 -PRKCZ STATE_CHANGE NFKB1 -PRKCZ STATE_CHANGE NFKBIA -PRKCZ STATE_CHANGE PEBP1 -PRKCZ STATE_CHANGE RAF1 -PRKCZ STATE_CHANGE RELA -PRKCZ STATE_CHANGE TIAM1 -PRKDC CO_CONTROL AR -PRKDC IN_SAME_COMPONENT BARD1 -PRKDC IN_SAME_COMPONENT TP53 -PRKDC IN_SAME_COMPONENT XRCC5 -PRKDC IN_SAME_COMPONENT XRCC6 -PRKDC METABOLIC_CATALYSIS KLK3 -PRKDC REACTS_WITH BARD1 -PRKDC REACTS_WITH PRKDC -PRKDC REACTS_WITH TP53 -PRKDC REACTS_WITH XRCC5 -PRKDC REACTS_WITH XRCC6 -PRKDC STATE_CHANGE AKT1 -PRKG1 IN_SAME_COMPONENT MAPK14 -PRKG1 REACTS_WITH MAPK14 -PRKG1 REACTS_WITH PRKG1 -PRKG1 REACTS_WITH TAB1 -PRKRA STATE_CHANGE EIF2AK2 -PRL IN_SAME_COMPONENT HBEGF -PRL IN_SAME_COMPONENT JAK2 -PRL IN_SAME_COMPONENT PRLR -PRL METABOLIC_CATALYSIS CSN2 -PRL REACTS_WITH HBEGF -PRL REACTS_WITH JAK2 -PRL REACTS_WITH PRL -PRL REACTS_WITH PRLR -PRLR IN_SAME_COMPONENT HBEGF -PRLR IN_SAME_COMPONENT JAK2 -PRLR IN_SAME_COMPONENT PRL -PRLR METABOLIC_CATALYSIS CSN2 -PRLR REACTS_WITH HBEGF -PRLR REACTS_WITH JAK2 -PRLR REACTS_WITH PRL -PRLR REACTS_WITH PRLR -PRLR STATE_CHANGE JAK2 -PRLR STATE_CHANGE STAT5A -PRL STATE_CHANGE JAK2 -PRL STATE_CHANGE STAT5A -PRMT1 CO_CONTROL TADA2B -PRMT1 CO_CONTROL TAF9 -PRMT1 IN_SAME_COMPONENT CARM1 -PRMT1 IN_SAME_COMPONENT TP53 -PRMT1 METABOLIC_CATALYSIS GADD45A -PRMT1 REACTS_WITH CARM1 -PRMT1 REACTS_WITH PRMT1 -PRMT1 REACTS_WITH TP53 -PRMT5 CO_CONTROL HDAC1 -PRMT5 CO_CONTROL RB1 -PRMT5 CO_CONTROL RBBP4 -PRMT5 CO_CONTROL TFDP1 -PRMT5 IN_SAME_COMPONENT TTC5 -PRMT5 IN_SAME_COMPONENT WDR77 -PRMT5 REACTS_WITH CHD3 -PRMT5 REACTS_WITH CHD4 -PRMT5 REACTS_WITH GATAD2A -PRMT5 REACTS_WITH GATAD2B -PRMT5 REACTS_WITH HDAC1 -PRMT5 REACTS_WITH HDAC2 -PRMT5 REACTS_WITH MBD2 -PRMT5 REACTS_WITH MTA2 -PRMT5 REACTS_WITH PRMT5 -PRMT5 REACTS_WITH RBBP4 -PRMT5 REACTS_WITH RBBP7 -PRMT5 REACTS_WITH TTC5 -PRMT5 STATE_CHANGE TP53 -PRNP IN_SAME_COMPONENT GPC1 -PRNP REACTS_WITH GPC1 -PRNP REACTS_WITH PRNP -PROC IN_SAME_COMPONENT ITGAM -PROC IN_SAME_COMPONENT ITGB2 -PROC REACTS_WITH ITGAM -PROC REACTS_WITH ITGB2 -PROC REACTS_WITH PROC -PSEN1 IN_SAME_COMPONENT APH1A -PSEN1 IN_SAME_COMPONENT APH1B -PSEN1 IN_SAME_COMPONENT NCSTN -PSEN1 IN_SAME_COMPONENT PSENEN -PSEN1 STATE_CHANGE CNTN1 -PSEN1 STATE_CHANGE CNTN6 -PSEN1 STATE_CHANGE CTNNB1 -PSEN1 STATE_CHANGE DLL1 -PSEN1 STATE_CHANGE DLL4 -PSEN1 STATE_CHANGE DNER -PSEN1 STATE_CHANGE FBXW11 -PSEN1 STATE_CHANGE NOTCH1 -PSEN1 STATE_CHANGE NOTCH2 -PSEN1 STATE_CHANGE NOTCH3 -PSEN1 STATE_CHANGE NOTCH4 -PSEN1 STATE_CHANGE SDC3 -PSEN1 STATE_CHANGE SORT1 -PSEN1 STATE_CHANGE TRAF6 -PSEN1 STATE_CHANGE ZNF274 -PSENEN IN_SAME_COMPONENT APH1A -PSENEN IN_SAME_COMPONENT APH1B -PSENEN IN_SAME_COMPONENT NCSTN -PSENEN IN_SAME_COMPONENT PSEN1 -PSENEN STATE_CHANGE CNTN1 -PSENEN STATE_CHANGE CNTN6 -PSENEN STATE_CHANGE CTNNB1 -PSENEN STATE_CHANGE DLL1 -PSENEN STATE_CHANGE DLL4 -PSENEN STATE_CHANGE DNER -PSENEN STATE_CHANGE FBXW11 -PSENEN STATE_CHANGE NOTCH1 -PSENEN STATE_CHANGE NOTCH2 -PSENEN STATE_CHANGE NOTCH3 -PSENEN STATE_CHANGE NOTCH4 -PSENEN STATE_CHANGE SDC3 -PSENEN STATE_CHANGE SORT1 -PSENEN STATE_CHANGE TRAF6 -PSENEN STATE_CHANGE ZNF274 -PSMA3 IN_SAME_COMPONENT AURKB -PSMA3 REACTS_WITH AURKB -PSMA3 REACTS_WITH BIRC5 -PSMA3 REACTS_WITH CDCA8 -PSMA3 REACTS_WITH CUL3 -PSMA3 REACTS_WITH INCENP -PSMA3 REACTS_WITH KLHL13 -PSMA3 REACTS_WITH KLHL9 -PSMA3 REACTS_WITH PSMA3 -PTCH1 IN_SAME_COMPONENT DHH -PTCH1 IN_SAME_COMPONENT IHH -PTCH1 IN_SAME_COMPONENT SHH -PTCH1 METABOLIC_CATALYSIS PTCH1 -PTCH1 METABOLIC_CATALYSIS PTHLH -PTCH1 METABOLIC_CATALYSIS TGFB2 -PTCH1 REACTS_WITH DHH -PTCH1 REACTS_WITH GPC3 -PTCH1 REACTS_WITH IHH -PTCH1 REACTS_WITH PTCH1 -PTCH1 REACTS_WITH SHH -PTCH1 STATE_CHANGE SMO -PTCH1 STATE_CHANGE STIL -PTCH2 IN_SAME_COMPONENT DHH -PTCH2 IN_SAME_COMPONENT IHH -PTCH2 IN_SAME_COMPONENT SHH -PTCH2 REACTS_WITH DHH -PTCH2 REACTS_WITH IHH -PTCH2 REACTS_WITH PTCH2 -PTCH2 REACTS_WITH SHH -PTEN CO_CONTROL PIK3CA -PTEN CO_CONTROL PIK3R1 -PTEN IN_SAME_COMPONENT PDGFB -PTEN IN_SAME_COMPONENT PDGFRB -PTEN REACTS_WITH PDGFB -PTEN REACTS_WITH PDGFRB -PTEN REACTS_WITH PTEN -PTF1A IN_SAME_COMPONENT HES1 -PTF1A REACTS_WITH HES1 -PTF1A REACTS_WITH PTF1A -PTGDR STATE_CHANGE PRKACA -PTGES2 IN_SAME_COMPONENT CEBPB -PTGES2 METABOLIC_CATALYSIS IRF9 -PTGES2 REACTS_WITH CEBPB -PTGES2 REACTS_WITH PTGES2 -PTGES3 IN_SAME_COMPONENT AKT1 -PTGES3 IN_SAME_COMPONENT DKC1 -PTGES3 IN_SAME_COMPONENT HNRNPC -PTGES3 IN_SAME_COMPONENT HSP90AA1 -PTGES3 IN_SAME_COMPONENT HUS1 -PTGES3 IN_SAME_COMPONENT MTOR -PTGES3 IN_SAME_COMPONENT NCL -PTGES3 IN_SAME_COMPONENT PINX1 -PTGES3 IN_SAME_COMPONENT RAD1 -PTGES3 IN_SAME_COMPONENT RAD9A -PTGES3 IN_SAME_COMPONENT RPS6KB1 -PTGES3 IN_SAME_COMPONENT SMG5 -PTGES3 IN_SAME_COMPONENT SMG6 -PTGES3 IN_SAME_COMPONENT TERT -PTGES3 REACTS_WITH AKT1 -PTGES3 REACTS_WITH DKC1 -PTGES3 REACTS_WITH HNRNPC -PTGES3 REACTS_WITH HSP90AA1 -PTGES3 REACTS_WITH HUS1 -PTGES3 REACTS_WITH MTOR -PTGES3 REACTS_WITH NCL -PTGES3 REACTS_WITH PINX1 -PTGES3 REACTS_WITH PTGES3 -PTGES3 REACTS_WITH RAD1 -PTGES3 REACTS_WITH RAD9A -PTGES3 REACTS_WITH RPS6KB1 -PTGES3 REACTS_WITH SMG5 -PTGES3 REACTS_WITH SMG6 -PTGES3 REACTS_WITH TERT -PTGIR STATE_CHANGE PRKACA -PTK2B CO_CONTROL AR -PTK2B CO_CONTROL TGFB1I1 -PTK2B IN_SAME_COMPONENT BCAR1 -PTK2B IN_SAME_COMPONENT CRK -PTK2B IN_SAME_COMPONENT IL2 -PTK2B IN_SAME_COMPONENT IL2RA -PTK2B IN_SAME_COMPONENT IL2RB -PTK2B IN_SAME_COMPONENT IL2RG -PTK2B IN_SAME_COMPONENT ITGAV -PTK2B IN_SAME_COMPONENT ITGB3 -PTK2B IN_SAME_COMPONENT JAK1 -PTK2B IN_SAME_COMPONENT JAK3 -PTK2B IN_SAME_COMPONENT LCK -PTK2B IN_SAME_COMPONENT PI4KA -PTK2B IN_SAME_COMPONENT PI4KB -PTK2B IN_SAME_COMPONENT PTPN11 -PTK2B IN_SAME_COMPONENT PXN -PTK2B IN_SAME_COMPONENT SRC -PTK2B METABOLIC_CATALYSIS KLK3 -PTK2B REACTS_WITH BCAR1 -PTK2B REACTS_WITH CRK -PTK2B REACTS_WITH IL2 -PTK2B REACTS_WITH IL2RA -PTK2B REACTS_WITH IL2RB -PTK2B REACTS_WITH IL2RG -PTK2B REACTS_WITH ITGAV -PTK2B REACTS_WITH ITGB3 -PTK2B REACTS_WITH JAK1 -PTK2B REACTS_WITH JAK3 -PTK2B REACTS_WITH LCK -PTK2B REACTS_WITH PI4KA -PTK2B REACTS_WITH PI4KB -PTK2B REACTS_WITH PTK2B -PTK2B REACTS_WITH PTPN11 -PTK2B REACTS_WITH PXN -PTK2B REACTS_WITH SRC -PTK2B STATE_CHANGE GSK3B -PTK2B STATE_CHANGE MAPK8 -PTK2B STATE_CHANGE PXN -PTK2B STATE_CHANGE STAT5B -PTK2 IN_SAME_COMPONENT BCAR1 -PTK2 IN_SAME_COMPONENT PXN -PTK2 REACTS_WITH BCAR1 -PTK2 REACTS_WITH CRK -PTK2 REACTS_WITH PXN -PTK2 REACTS_WITH TRIP6 -PTK2 STATE_CHANGE RAP1B -PTN STATE_CHANGE CTTN -PTN STATE_CHANGE SDC3 -PTN STATE_CHANGE SRC -PTP4A1 IN_SAME_COMPONENT ATF5 -PTP4A1 REACTS_WITH ATF5 -PTP4A1 REACTS_WITH PTP4A1 -PTP4A1 STATE_CHANGE CCNA2 -PTP4A1 STATE_CHANGE CDKN1A -PTP4A1 STATE_CHANGE RAC1 -PTP4A1 STATE_CHANGE RHOA -PTP4A1 STATE_CHANGE RHOC -PTP4A2 IN_SAME_COMPONENT RABGGTB -PTP4A2 REACTS_WITH PTP4A2 -PTP4A2 REACTS_WITH RABGGTA -PTP4A2 REACTS_WITH RABGGTB -PTP4A2 STATE_CHANGE CDKN1A -PTP4A3 IN_SAME_COMPONENT ITGA1 -PTP4A3 REACTS_WITH ITGA1 -PTP4A3 REACTS_WITH PTP4A3 -PTP4A3 STATE_CHANGE BCAR1 -PTP4A3 STATE_CHANGE ITGB1 -PTP4A3 STATE_CHANGE RAC1 -PTP4A3 STATE_CHANGE RHOA -PTP4A3 STATE_CHANGE RHOC -PTPN11 CO_CONTROL CD247 -PTPN11 CO_CONTROL CD3D -PTPN11 CO_CONTROL CD3E -PTPN11 CO_CONTROL CD3G -PTPN11 CO_CONTROL CD4 -PTPN11 CO_CONTROL FOXO1 -PTPN11 CO_CONTROL FYN -PTPN11 CO_CONTROL HLA-DRA -PTPN11 CO_CONTROL HLA-DRB1 -PTPN11 CO_CONTROL LCK -PTPN11 CO_CONTROL SRC -PTPN11 CO_CONTROL STAT3 -PTPN11 CO_CONTROL ZAP70 -PTPN11 IN_SAME_COMPONENT CSF2 -PTPN11 IN_SAME_COMPONENT CSF2RA -PTPN11 IN_SAME_COMPONENT CSF2RB -PTPN11 IN_SAME_COMPONENT FLT1 -PTPN11 IN_SAME_COMPONENT FRS2 -PTPN11 IN_SAME_COMPONENT GAB1 -PTPN11 IN_SAME_COMPONENT GAB2 -PTPN11 IN_SAME_COMPONENT GDNF -PTPN11 IN_SAME_COMPONENT GFRA1 -PTPN11 IN_SAME_COMPONENT HGF -PTPN11 IN_SAME_COMPONENT IGF1 -PTPN11 IN_SAME_COMPONENT IGF1R -PTPN11 IN_SAME_COMPONENT IL2 -PTPN11 IN_SAME_COMPONENT IL2RA -PTPN11 IN_SAME_COMPONENT IL2RB -PTPN11 IN_SAME_COMPONENT IL2RG -PTPN11 IN_SAME_COMPONENT IL3 -PTPN11 IN_SAME_COMPONENT IL3RA -PTPN11 IN_SAME_COMPONENT IL5 -PTPN11 IN_SAME_COMPONENT IL5RA -PTPN11 IN_SAME_COMPONENT INPP5D -PTPN11 IN_SAME_COMPONENT INS -PTPN11 IN_SAME_COMPONENT INSR -PTPN11 IN_SAME_COMPONENT IRS1 -PTPN11 IN_SAME_COMPONENT JAK1 -PTPN11 IN_SAME_COMPONENT JAK2 -PTPN11 IN_SAME_COMPONENT JAK3 -PTPN11 IN_SAME_COMPONENT KLRG1 -PTPN11 IN_SAME_COMPONENT LCK -PTPN11 IN_SAME_COMPONENT MET -PTPN11 IN_SAME_COMPONENT MLLT4 -PTPN11 IN_SAME_COMPONENT NOS3 -PTPN11 IN_SAME_COMPONENT PDGFB -PTPN11 IN_SAME_COMPONENT PDGFRB -PTPN11 IN_SAME_COMPONENT PIK3CA -PTPN11 IN_SAME_COMPONENT PIK3R1 -PTPN11 IN_SAME_COMPONENT PRKACA -PTPN11 IN_SAME_COMPONENT PTK2B -PTPN11 IN_SAME_COMPONENT RAPGEF1 -PTPN11 IN_SAME_COMPONENT SDC2 -PTPN11 IN_SAME_COMPONENT SHC1 -PTPN11 IN_SAME_COMPONENT SOS1 -PTPN11 IN_SAME_COMPONENT STAT1 -PTPN11 IN_SAME_COMPONENT TEK -PTPN11 IN_SAME_COMPONENT VEGFA -PTPN11 METABOLIC_CATALYSIS A2M -PTPN11 METABOLIC_CATALYSIS CCND3 -PTPN11 REACTS_WITH CSF2 -PTPN11 REACTS_WITH CSF2RA -PTPN11 REACTS_WITH CSF2RB -PTPN11 REACTS_WITH FLT1 -PTPN11 REACTS_WITH FRS2 -PTPN11 REACTS_WITH GAB1 -PTPN11 REACTS_WITH GAB2 -PTPN11 REACTS_WITH GDNF -PTPN11 REACTS_WITH GFRA1 -PTPN11 REACTS_WITH HGF -PTPN11 REACTS_WITH IGF1 -PTPN11 REACTS_WITH IGF1R -PTPN11 REACTS_WITH IL2 -PTPN11 REACTS_WITH IL2RA -PTPN11 REACTS_WITH IL2RB -PTPN11 REACTS_WITH IL2RG -PTPN11 REACTS_WITH IL3 -PTPN11 REACTS_WITH IL3RA -PTPN11 REACTS_WITH IL5 -PTPN11 REACTS_WITH IL5RA -PTPN11 REACTS_WITH INPP5D -PTPN11 REACTS_WITH INS -PTPN11 REACTS_WITH INSR -PTPN11 REACTS_WITH IRS1 -PTPN11 REACTS_WITH JAK1 -PTPN11 REACTS_WITH JAK2 -PTPN11 REACTS_WITH JAK3 -PTPN11 REACTS_WITH KLRG1 -PTPN11 REACTS_WITH LCK -PTPN11 REACTS_WITH MET -PTPN11 REACTS_WITH MLLT4 -PTPN11 REACTS_WITH NOS3 -PTPN11 REACTS_WITH PDGFB -PTPN11 REACTS_WITH PDGFRB -PTPN11 REACTS_WITH PIK3CA -PTPN11 REACTS_WITH PIK3R1 -PTPN11 REACTS_WITH PRKACA -PTPN11 REACTS_WITH PTK2B -PTPN11 REACTS_WITH PTPN11 -PTPN11 REACTS_WITH RAPGEF1 -PTPN11 REACTS_WITH SDC2 -PTPN11 REACTS_WITH SHC1 -PTPN11 REACTS_WITH SOS1 -PTPN11 REACTS_WITH STAT1 -PTPN11 REACTS_WITH TEK -PTPN11 REACTS_WITH VEGFA -PTPN11 STATE_CHANGE AKT1 -PTPN11 STATE_CHANGE EGF -PTPN11 STATE_CHANGE EGFR -PTPN11 STATE_CHANGE ERBB2 -PTPN11 STATE_CHANGE ERBB3 -PTPN11 STATE_CHANGE FCER1A -PTPN11 STATE_CHANGE FCER1G -PTPN11 STATE_CHANGE FYB -PTPN11 STATE_CHANGE GAB1 -PTPN11 STATE_CHANGE GNAI1 -PTPN11 STATE_CHANGE GNAI3 -PTPN11 STATE_CHANGE HGF -PTPN11 STATE_CHANGE IFNG -PTPN11 STATE_CHANGE IFNGR1 -PTPN11 STATE_CHANGE IGHE -PTPN11 STATE_CHANGE JAK1 -PTPN11 STATE_CHANGE JAK2 -PTPN11 STATE_CHANGE KIT -PTPN11 STATE_CHANGE KITLG -PTPN11 STATE_CHANGE LYN -PTPN11 STATE_CHANGE MET -PTPN11 STATE_CHANGE MS4A2 -PTPN11 STATE_CHANGE PAG1 -PTPN11 STATE_CHANGE PDGFB -PTPN11 STATE_CHANGE PDGFRB -PTPN11 STATE_CHANGE PIK3CA -PTPN11 STATE_CHANGE PIK3R1 -PTPN11 STATE_CHANGE PRKCZ -PTPN11 STATE_CHANGE SGMS1 -PTPN11 STATE_CHANGE SHC1 -PTPN11 STATE_CHANGE SMPD1 -PTPN11 STATE_CHANGE SOS1 -PTPN11 STATE_CHANGE SYK -PTPN11 STATE_CHANGE UGCG -PTPN11 STATE_CHANGE VAV1 -PTPN13 STATE_CHANGE EFNB1 -PTPN1 IN_SAME_COMPONENT AKT1 -PTPN1 IN_SAME_COMPONENT BCAR1 -PTPN1 IN_SAME_COMPONENT CDH2 -PTPN1 IN_SAME_COMPONENT IGF1 -PTPN1 IN_SAME_COMPONENT IGF1R -PTPN1 IN_SAME_COMPONENT INS -PTPN1 IN_SAME_COMPONENT INSR -PTPN1 IN_SAME_COMPONENT IRS1 -PTPN1 IN_SAME_COMPONENT SHC1 -PTPN1 IN_SAME_COMPONENT TRPV6 -PTPN1 METABOLIC_CATALYSIS CSN2 -PTPN1 REACTS_WITH AKT1 -PTPN1 REACTS_WITH BCAR1 -PTPN1 REACTS_WITH CDH2 -PTPN1 REACTS_WITH IGF1 -PTPN1 REACTS_WITH IGF1R -PTPN1 REACTS_WITH INS -PTPN1 REACTS_WITH INSR -PTPN1 REACTS_WITH IRS1 -PTPN1 REACTS_WITH PTPN1 -PTPN1 REACTS_WITH SHC1 -PTPN1 REACTS_WITH TRPV6 -PTPN1 STATE_CHANGE BCAR1 -PTPN1 STATE_CHANGE CAV1 -PTPN1 STATE_CHANGE CRK -PTPN1 STATE_CHANGE CSF1 -PTPN1 STATE_CHANGE CSF1R -PTPN1 STATE_CHANGE DOK1 -PTPN1 STATE_CHANGE EGF -PTPN1 STATE_CHANGE EGFR -PTPN1 STATE_CHANGE HGF -PTPN1 STATE_CHANGE INS -PTPN1 STATE_CHANGE INSR -PTPN1 STATE_CHANGE JAK2 -PTPN1 STATE_CHANGE LAT -PTPN1 STATE_CHANGE LEP -PTPN1 STATE_CHANGE LEPR -PTPN1 STATE_CHANGE MET -PTPN1 STATE_CHANGE PDGFB -PTPN1 STATE_CHANGE PDGFRB -PTPN1 STATE_CHANGE SRC -PTPN1 STATE_CHANGE STAT5A -PTPN1 STATE_CHANGE STAT5B -PTPN1 STATE_CHANGE TYK2 -PTPN21 IN_SAME_COMPONENT SRC -PTPN21 REACTS_WITH PTPN21 -PTPN21 REACTS_WITH SRC -PTPN6 CO_CONTROL IL2RG -PTPN6 CO_CONTROL IL4 -PTPN6 CO_CONTROL IL4R -PTPN6 CO_CONTROL JAK1 -PTPN6 CO_CONTROL JAK3 -PTPN6 IN_SAME_COMPONENT CD72 -PTPN6 IN_SAME_COMPONENT IL2RG -PTPN6 IN_SAME_COMPONENT IL4 -PTPN6 IN_SAME_COMPONENT IL4R -PTPN6 IN_SAME_COMPONENT JAK1 -PTPN6 IN_SAME_COMPONENT JAK3 -PTPN6 REACTS_WITH BLNK -PTPN6 REACTS_WITH BTK -PTPN6 REACTS_WITH CD72 -PTPN6 REACTS_WITH CD79A -PTPN6 REACTS_WITH CD79B -PTPN6 REACTS_WITH IL2RG -PTPN6 REACTS_WITH IL4 -PTPN6 REACTS_WITH IL4R -PTPN6 REACTS_WITH JAK1 -PTPN6 REACTS_WITH JAK3 -PTPN6 REACTS_WITH LYN -PTPN6 REACTS_WITH PLCG2 -PTPN6 REACTS_WITH PTPN6 -PTPN6 REACTS_WITH SYK -PTPN6 STATE_CHANGE CD247 -PTPN6 STATE_CHANGE CD3D -PTPN6 STATE_CHANGE CD3E -PTPN6 STATE_CHANGE CD3G -PTPN6 STATE_CHANGE CD4 -PTPN6 STATE_CHANGE CD79A -PTPN6 STATE_CHANGE CD79B -PTPN6 STATE_CHANGE CTNNB1 -PTPN6 STATE_CHANGE EGF -PTPN6 STATE_CHANGE EGFR -PTPN6 STATE_CHANGE EPO -PTPN6 STATE_CHANGE EPOR -PTPN6 STATE_CHANGE FYN -PTPN6 STATE_CHANGE HLA-DRA -PTPN6 STATE_CHANGE HLA-DRB1 -PTPN6 STATE_CHANGE JAK2 -PTPN6 STATE_CHANGE KDR -PTPN6 STATE_CHANGE KIT -PTPN6 STATE_CHANGE KITLG -PTPN6 STATE_CHANGE LCK -PTPN6 STATE_CHANGE LYN -PTPN6 STATE_CHANGE PIK3CA -PTPN6 STATE_CHANGE PIK3R1 -PTPN6 STATE_CHANGE SH3BP2 -PTPN6 STATE_CHANGE SOCS3 -PTPN6 STATE_CHANGE STAT6 -PTPN6 STATE_CHANGE SYK -PTPN6 STATE_CHANGE VEGFA -PTPN6 STATE_CHANGE ZAP70 -PTPRA CO_CONTROL FN1 -PTPRA CO_CONTROL ITGA4 -PTPRA CO_CONTROL ITGB1 -PTPRA CO_CONTROL VCAM1 -PTPRA STATE_CHANGE INS -PTPRA STATE_CHANGE INSR -PTPRA STATE_CHANGE SRC -PTPRC CO_CONTROL CSK -PTPRC CO_CONTROL PAG1 -PTPRC IN_SAME_COMPONENT CXCL12 -PTPRC IN_SAME_COMPONENT CXCR4 -PTPRC REACTS_WITH CXCL12 -PTPRC REACTS_WITH CXCR4 -PTPRC REACTS_WITH PTPRC -PTPRC STATE_CHANGE CD79A -PTPRC STATE_CHANGE CD79B -PTPRC STATE_CHANGE FYN -PTPRC STATE_CHANGE LCK -PTPRC STATE_CHANGE LYN -PTPRJ STATE_CHANGE HGF -PTPRJ STATE_CHANGE KDR -PTPRJ STATE_CHANGE MET -PTPRJ STATE_CHANGE PDGFB -PTPRJ STATE_CHANGE PDGFRB -PTPRJ STATE_CHANGE SRC -PTPRJ STATE_CHANGE VEGFA -PTPRM STATE_CHANGE PIP5K1C -PVR IN_SAME_COMPONENT ITGAV -PVR IN_SAME_COMPONENT ITGB3 -PVR IN_SAME_COMPONENT PVRL3 -PVRL1 IN_SAME_COMPONENT PVRL3 -PVRL1 REACTS_WITH PVR -PVRL1 REACTS_WITH PVRL1 -PVRL1 REACTS_WITH PVRL3 -PVRL1 STATE_CHANGE CDH1 -PVRL1 STATE_CHANGE CTNNA1 -PVRL1 STATE_CHANGE CTNNB1 -PVRL2 CO_CONTROL CDH1 -PVRL2 CO_CONTROL CTNNA1 -PVRL2 CO_CONTROL CTNNB1 -PVRL2 CO_CONTROL CTNND1 -PVRL2 IN_SAME_COMPONENT PVRL3 -PVRL2 REACTS_WITH PVRL2 -PVRL2 REACTS_WITH PVRL3 -PVRL2 STATE_CHANGE CDH1 -PVRL2 STATE_CHANGE CTNNA1 -PVRL2 STATE_CHANGE CTNNB1 -PVRL2 STATE_CHANGE EXOC3 -PVRL2 STATE_CHANGE EXOC4 -PVRL3 IN_SAME_COMPONENT PVR -PVRL3 IN_SAME_COMPONENT PVRL1 -PVRL3 IN_SAME_COMPONENT PVRL2 -PVRL3 REACTS_WITH PVR -PVRL3 REACTS_WITH PVRL1 -PVRL3 REACTS_WITH PVRL2 -PVRL3 REACTS_WITH PVRL3 -PVRL3 STATE_CHANGE CLDN1 -PVRL3 STATE_CHANGE F11R -PVRL3 STATE_CHANGE PIK3CA -PVRL3 STATE_CHANGE PIK3R1 -PVRL3 STATE_CHANGE PTPRM -PVRL3 STATE_CHANGE SRC -PVR REACTS_WITH ITGAV -PVR REACTS_WITH ITGB3 -PVR REACTS_WITH PVR -PVR REACTS_WITH PVRL1 -PVR REACTS_WITH PVRL3 -PVR STATE_CHANGE SRC -PXN CO_CONTROL ITGA2B -PXN CO_CONTROL ITGB3 -PXN IN_SAME_COMPONENT ARHGEF7 -PXN IN_SAME_COMPONENT BCAR1 -PXN IN_SAME_COMPONENT CRK -PXN IN_SAME_COMPONENT EPHB1 -PXN IN_SAME_COMPONENT FN1 -PXN IN_SAME_COMPONENT GIT1 -PXN IN_SAME_COMPONENT GIT2 -PXN IN_SAME_COMPONENT ITGA2B -PXN IN_SAME_COMPONENT ITGA4 -PXN IN_SAME_COMPONENT ITGA9 -PXN IN_SAME_COMPONENT ITGB1 -PXN IN_SAME_COMPONENT ITGB3 -PXN IN_SAME_COMPONENT PAK1 -PXN IN_SAME_COMPONENT PTK2 -PXN IN_SAME_COMPONENT PTK2B -PXN IN_SAME_COMPONENT SRC -PXN IN_SAME_COMPONENT TLN1 -PXN IN_SAME_COMPONENT TNC -PXN IN_SAME_COMPONENT VCAM1 -PXN IN_SAME_COMPONENT YWHAZ -PXN INTERACTS_WITH RAC1 -PXN INTERACTS_WITH RHOA -PXN REACTS_WITH ARHGEF7 -PXN REACTS_WITH BCAR1 -PXN REACTS_WITH CRK -PXN REACTS_WITH EPHB1 -PXN REACTS_WITH FN1 -PXN REACTS_WITH GIT1 -PXN REACTS_WITH GIT2 -PXN REACTS_WITH ITGA4 -PXN REACTS_WITH ITGA9 -PXN REACTS_WITH ITGB1 -PXN REACTS_WITH ITGB7 -PXN REACTS_WITH PAK1 -PXN REACTS_WITH PTK2 -PXN REACTS_WITH PTK2B -PXN REACTS_WITH PXN -PXN REACTS_WITH SRC -PXN REACTS_WITH TLN1 -PXN REACTS_WITH TNC -PXN REACTS_WITH TRIP6 -PXN REACTS_WITH VCAM1 -PXN REACTS_WITH YWHAZ -PXN STATE_CHANGE PTK2B -PXN STATE_CHANGE RAP1B -RAB11A IN_SAME_COMPONENT ARR3 -RAB11A IN_SAME_COMPONENT ARRB2 -RAB11A IN_SAME_COMPONENT RAB11FIP3 -RAB11A IN_SAME_COMPONENT TBXA2R -RAB11A REACTS_WITH ARR3 -RAB11A REACTS_WITH ARRB2 -RAB11A REACTS_WITH RAB11A -RAB11A REACTS_WITH RAB11FIP3 -RAB11A REACTS_WITH TBXA2R -RAB11A STATE_CHANGE CXCR2 -RAB11A STATE_CHANGE DLL1 -RAB11A STATE_CHANGE IL8 -RAB11FIP3 IN_SAME_COMPONENT RAB11A -RAB11FIP3 REACTS_WITH RAB11A -RAB11FIP3 REACTS_WITH RAB11FIP3 -RAB1A IN_SAME_COMPONENT GOLGA2 -RAB1A IN_SAME_COMPONENT GORASP1 -RAB1A IN_SAME_COMPONENT PLK1 -RAB1A REACTS_WITH GOLGA2 -RAB1A REACTS_WITH GORASP1 -RAB1A REACTS_WITH PLK1 -RAB1A REACTS_WITH RAB1A -RAB23 CO_CONTROL ARRB2 -RAB23 CO_CONTROL SMO -RAB23 METABOLIC_CATALYSIS GLI2 -RAB23 STATE_CHANGE GLI3 -RAB3GAP2 IN_SAME_COMPONENT RIMS1 -RAB3GAP2 IN_SAME_COMPONENT UNC13B -RAB3GAP2 REACTS_WITH RAB3GAP2 -RAB3GAP2 REACTS_WITH RIMS1 -RAB3GAP2 REACTS_WITH UNC13B -RAB3GAP2 STATE_CHANGE STX1A -RAB3GAP2 STATE_CHANGE VAMP2 -RAB4A REACTS_WITH RAB4A -RAB5A CO_CONTROL DNM1 -RAB5A CO_CONTROL DNM2 -RAB5A IN_SAME_COMPONENT ACTN4 -RAB5A IN_SAME_COMPONENT GDI1 -RAB5A IN_SAME_COMPONENT USP6NL -RAB5A REACTS_WITH ACTN4 -RAB5A REACTS_WITH GDI1 -RAB5A REACTS_WITH RAB5A -RAB5A REACTS_WITH USP6NL -RAB5A STATE_CHANGE CDH1 -RAB5A STATE_CHANGE CTNNA1 -RAB5A STATE_CHANGE CTNNB1 -RAB5A STATE_CHANGE CXCR1 -RAB5A STATE_CHANGE CXCR2 -RAB5A STATE_CHANGE EGF -RAB5A STATE_CHANGE EGFR -RAB5A STATE_CHANGE IL8 -RAB5A STATE_CHANGE MET -RAB7A CO_CONTROL HGS -RAB7A STATE_CHANGE CDH1 -RAB7A STATE_CHANGE CTNNB1 -RAB7A STATE_CHANGE CXCR2 -RAB7A STATE_CHANGE IL8 -RABGGTA IN_SAME_COMPONENT RABGGTB -RABGGTA REACTS_WITH PTP4A2 -RABGGTA REACTS_WITH RABGGTA -RABGGTA REACTS_WITH RABGGTB -RABGGTB IN_SAME_COMPONENT PTP4A2 -RABGGTB IN_SAME_COMPONENT RABGGTA -RABGGTB REACTS_WITH PTP4A2 -RABGGTB REACTS_WITH RABGGTA -RABGGTB REACTS_WITH RABGGTB -RAC1 CO_CONTROL ABL1 -RAC1 CO_CONTROL BAIAP2 -RAC1 CO_CONTROL CDC42 -RAC1 CO_CONTROL DAPP1 -RAC1 CO_CONTROL IQGAP1 -RAC1 CO_CONTROL MAP3K7 -RAC1 CO_CONTROL MAP4K1 -RAC1 CO_CONTROL PIK3CA -RAC1 CO_CONTROL PIK3R1 -RAC1 CO_CONTROL RAC1 -RAC1 CO_CONTROL RACGAP1 -RAC1 CO_CONTROL RHOA -RAC1 IN_SAME_COMPONENT ARFIP2 -RAC1 IN_SAME_COMPONENT ARHGDIA -RAC1 IN_SAME_COMPONENT ARHGEF7 -RAC1 IN_SAME_COMPONENT CCM2 -RAC1 IN_SAME_COMPONENT CYBA -RAC1 IN_SAME_COMPONENT CYBB -RAC1 IN_SAME_COMPONENT IQGAP1 -RAC1 IN_SAME_COMPONENT MAP2K3 -RAC1 IN_SAME_COMPONENT MAP3K3 -RAC1 IN_SAME_COMPONENT NCF1 -RAC1 IN_SAME_COMPONENT NCF2 -RAC1 IN_SAME_COMPONENT NOX1 -RAC1 IN_SAME_COMPONENT NOXA1 -RAC1 IN_SAME_COMPONENT NOXO1 -RAC1 INTERACTS_WITH CDC42 -RAC1 INTERACTS_WITH ITGAV -RAC1 INTERACTS_WITH ITGB3 -RAC1 INTERACTS_WITH PXN -RAC1 INTERACTS_WITH RHOA -RAC1 METABOLIC_CATALYSIS CCND1 -RAC1 REACTS_WITH ARFIP2 -RAC1 REACTS_WITH ARHGDIA -RAC1 REACTS_WITH ARHGEF7 -RAC1 REACTS_WITH CCM2 -RAC1 REACTS_WITH CYBA -RAC1 REACTS_WITH CYBB -RAC1 REACTS_WITH IQGAP1 -RAC1 REACTS_WITH MAP2K3 -RAC1 REACTS_WITH MAP3K3 -RAC1 REACTS_WITH NCF1 -RAC1 REACTS_WITH NCF2 -RAC1 REACTS_WITH NOX1 -RAC1 REACTS_WITH NOXA1 -RAC1 REACTS_WITH NOXO1 -RAC1 REACTS_WITH RAC1 -RAC1 STATE_CHANGE ABI1 -RAC1 STATE_CHANGE ABI2 -RAC1 STATE_CHANGE AKT1 -RAC1 STATE_CHANGE ARHGAP5 -RAC1 STATE_CHANGE ARHGEF7 -RAC1 STATE_CHANGE ARR3 -RAC1 STATE_CHANGE ARRB2 -RAC1 STATE_CHANGE BCAR1 -RAC1 STATE_CHANGE C3orf10 -RAC1 STATE_CHANGE CDH1 -RAC1 STATE_CHANGE CRK -RAC1 STATE_CHANGE CTNNA1 -RAC1 STATE_CHANGE CTNNB1 -RAC1 STATE_CHANGE CTNND1 -RAC1 STATE_CHANGE CTTN -RAC1 STATE_CHANGE CYFIP2 -RAC1 STATE_CHANGE DOK2 -RAC1 STATE_CHANGE GAB1 -RAC1 STATE_CHANGE GIT2 -RAC1 STATE_CHANGE GRLF1 -RAC1 STATE_CHANGE IQGAP1 -RAC1 STATE_CHANGE IQGAP3 -RAC1 STATE_CHANGE KLHL20 -RAC1 STATE_CHANGE MAP2K4 -RAC1 STATE_CHANGE MAP3K1 -RAC1 STATE_CHANGE MAP3K11 -RAC1 STATE_CHANGE MAPK9 -RAC1 STATE_CHANGE NCK1 -RAC1 STATE_CHANGE NCKAP1 -RAC1 STATE_CHANGE PAK1 -RAC1 STATE_CHANGE PAK2 -RAC1 STATE_CHANGE PDGFB -RAC1 STATE_CHANGE PDGFRB -RAC1 STATE_CHANGE PIP5K1A -RAC1 STATE_CHANGE PIP5K1B -RAC1 STATE_CHANGE PIP5K1C -RAC1 STATE_CHANGE PLCB2 -RAC1 STATE_CHANGE RHOA -RAC1 STATE_CHANGE STAT3 -RAC1 STATE_CHANGE STAT5A -RAC1 STATE_CHANGE TBXA2R -RAC1 STATE_CHANGE WASF1 -RAC1 STATE_CHANGE WASF2 -RAC1 STATE_CHANGE WASL -RAC2 REACTS_WITH RAC2 -RACGAP1 CO_CONTROL RAC1 -RACGAP1 IN_SAME_COMPONENT KIF23 -RACGAP1 REACTS_WITH KIF23 -RACGAP1 REACTS_WITH RACGAP1 -RACGAP1 STATE_CHANGE CDC42 -RACGAP1 STATE_CHANGE RAC1 -RACGAP1 STATE_CHANGE RHOA -RACGAP1 STATE_CHANGE STAT3 -RACGAP1 STATE_CHANGE STAT5A -RAD17 IN_SAME_COMPONENT ATR -RAD17 IN_SAME_COMPONENT ATRIP -RAD17 IN_SAME_COMPONENT CDC6 -RAD17 IN_SAME_COMPONENT CEP164 -RAD17 IN_SAME_COMPONENT CHEK1 -RAD17 IN_SAME_COMPONENT CLSPN -RAD17 IN_SAME_COMPONENT HUS1 -RAD17 IN_SAME_COMPONENT RAD1 -RAD17 IN_SAME_COMPONENT RAD9A -RAD17 IN_SAME_COMPONENT RFC2 -RAD17 IN_SAME_COMPONENT RFC3 -RAD17 IN_SAME_COMPONENT RFC4 -RAD17 IN_SAME_COMPONENT RFC5 -RAD17 IN_SAME_COMPONENT RPA1 -RAD17 IN_SAME_COMPONENT RPA2 -RAD17 IN_SAME_COMPONENT SMARCAL1 -RAD17 IN_SAME_COMPONENT TIMELESS -RAD17 IN_SAME_COMPONENT TIPIN -RAD17 IN_SAME_COMPONENT TOPBP1 -RAD17 REACTS_WITH ATR -RAD17 REACTS_WITH ATRIP -RAD17 REACTS_WITH CDC6 -RAD17 REACTS_WITH CEP164 -RAD17 REACTS_WITH CHEK1 -RAD17 REACTS_WITH CLSPN -RAD17 REACTS_WITH HUS1 -RAD17 REACTS_WITH RAD1 -RAD17 REACTS_WITH RAD17 -RAD17 REACTS_WITH RAD9A -RAD17 REACTS_WITH RFC2 -RAD17 REACTS_WITH RFC3 -RAD17 REACTS_WITH RFC4 -RAD17 REACTS_WITH RFC5 -RAD17 REACTS_WITH RPA1 -RAD17 REACTS_WITH RPA2 -RAD17 REACTS_WITH SMARCAL1 -RAD17 REACTS_WITH TIMELESS -RAD17 REACTS_WITH TIPIN -RAD17 REACTS_WITH TOPBP1 -RAD17 STATE_CHANGE FANCD2 -RAD17 STATE_CHANGE MCM2 -RAD17 STATE_CHANGE MDM2 -RAD17 STATE_CHANGE NBN -RAD1 IN_SAME_COMPONENT ATR -RAD1 IN_SAME_COMPONENT ATRIP -RAD1 IN_SAME_COMPONENT CDC6 -RAD1 IN_SAME_COMPONENT CEP164 -RAD1 IN_SAME_COMPONENT CHEK1 -RAD1 IN_SAME_COMPONENT CLSPN -RAD1 IN_SAME_COMPONENT DKC1 -RAD1 IN_SAME_COMPONENT HSP90AA1 -RAD1 IN_SAME_COMPONENT HUS1 -RAD1 IN_SAME_COMPONENT PTGES3 -RAD1 IN_SAME_COMPONENT RAD17 -RAD1 IN_SAME_COMPONENT RAD9A -RAD1 IN_SAME_COMPONENT RFC2 -RAD1 IN_SAME_COMPONENT RFC3 -RAD1 IN_SAME_COMPONENT RFC4 -RAD1 IN_SAME_COMPONENT RFC5 -RAD1 IN_SAME_COMPONENT RPA1 -RAD1 IN_SAME_COMPONENT RPA2 -RAD1 IN_SAME_COMPONENT SMARCAL1 -RAD1 IN_SAME_COMPONENT TERT -RAD1 IN_SAME_COMPONENT TIMELESS -RAD1 IN_SAME_COMPONENT TIPIN -RAD1 IN_SAME_COMPONENT TOPBP1 -RAD1 REACTS_WITH ATR -RAD1 REACTS_WITH ATRIP -RAD1 REACTS_WITH CDC6 -RAD1 REACTS_WITH CEP164 -RAD1 REACTS_WITH CHEK1 -RAD1 REACTS_WITH CLSPN -RAD1 REACTS_WITH DKC1 -RAD1 REACTS_WITH HSP90AA1 -RAD1 REACTS_WITH HUS1 -RAD1 REACTS_WITH PTGES3 -RAD1 REACTS_WITH RAD1 -RAD1 REACTS_WITH RAD17 -RAD1 REACTS_WITH RAD9A -RAD1 REACTS_WITH RFC2 -RAD1 REACTS_WITH RFC3 -RAD1 REACTS_WITH RFC4 -RAD1 REACTS_WITH RFC5 -RAD1 REACTS_WITH RPA1 -RAD1 REACTS_WITH RPA2 -RAD1 REACTS_WITH SMARCAL1 -RAD1 REACTS_WITH TERT -RAD1 REACTS_WITH TIMELESS -RAD1 REACTS_WITH TIPIN -RAD1 REACTS_WITH TOPBP1 -RAD1 STATE_CHANGE FANCD2 -RAD1 STATE_CHANGE MCM2 -RAD1 STATE_CHANGE MDM2 -RAD1 STATE_CHANGE NBN -RAD50 IN_SAME_COMPONENT ATM -RAD50 IN_SAME_COMPONENT BARD1 -RAD50 IN_SAME_COMPONENT BRCA1 -RAD50 IN_SAME_COMPONENT FAM175A -RAD50 IN_SAME_COMPONENT H2AFX -RAD50 IN_SAME_COMPONENT MDC1 -RAD50 IN_SAME_COMPONENT MRE11A -RAD50 IN_SAME_COMPONENT NBN -RAD50 IN_SAME_COMPONENT RBBP8 -RAD50 IN_SAME_COMPONENT RNF8 -RAD50 IN_SAME_COMPONENT TERF2 -RAD50 IN_SAME_COMPONENT TERF2IP -RAD50 IN_SAME_COMPONENT TP53BP1 -RAD50 IN_SAME_COMPONENT UIMC1 -RAD50 METABOLIC_CATALYSIS SMC3 -RAD50 REACTS_WITH ATM -RAD50 REACTS_WITH BARD1 -RAD50 REACTS_WITH BRCA1 -RAD50 REACTS_WITH CTBP1 -RAD50 REACTS_WITH FAM175A -RAD50 REACTS_WITH H2AFX -RAD50 REACTS_WITH MDC1 -RAD50 REACTS_WITH MRE11A -RAD50 REACTS_WITH NBN -RAD50 REACTS_WITH RAD50 -RAD50 REACTS_WITH RBBP8 -RAD50 REACTS_WITH RNF8 -RAD50 REACTS_WITH TERF2 -RAD50 REACTS_WITH TERF2IP -RAD50 REACTS_WITH TP53BP1 -RAD50 REACTS_WITH UIMC1 -RAD50 STATE_CHANGE CHEK2 -RAD50 STATE_CHANGE DCLRE1C -RAD50 STATE_CHANGE FANCD2 -RAD50 STATE_CHANGE H2AFX -RAD50 STATE_CHANGE SMC1A -RAD50 STATE_CHANGE TRIM28 -RAD50 STATE_CHANGE XRCC4 -RAD51 IN_SAME_COMPONENT BARD1 -RAD51 IN_SAME_COMPONENT BRCA1 -RAD51 IN_SAME_COMPONENT BRCA2 -RAD51 IN_SAME_COMPONENT PCNA -RAD51 REACTS_WITH BARD1 -RAD51 REACTS_WITH BRCA1 -RAD51 REACTS_WITH BRCA2 -RAD51 REACTS_WITH PCNA -RAD51 REACTS_WITH RAD51 -RAD9A IN_SAME_COMPONENT ATR -RAD9A IN_SAME_COMPONENT ATRIP -RAD9A IN_SAME_COMPONENT CDC6 -RAD9A IN_SAME_COMPONENT CEP164 -RAD9A IN_SAME_COMPONENT CHEK1 -RAD9A IN_SAME_COMPONENT CLSPN -RAD9A IN_SAME_COMPONENT DKC1 -RAD9A IN_SAME_COMPONENT HSP90AA1 -RAD9A IN_SAME_COMPONENT HUS1 -RAD9A IN_SAME_COMPONENT PTGES3 -RAD9A IN_SAME_COMPONENT RAD1 -RAD9A IN_SAME_COMPONENT RAD17 -RAD9A IN_SAME_COMPONENT RFC2 -RAD9A IN_SAME_COMPONENT RFC3 -RAD9A IN_SAME_COMPONENT RFC4 -RAD9A IN_SAME_COMPONENT RFC5 -RAD9A IN_SAME_COMPONENT RPA1 -RAD9A IN_SAME_COMPONENT RPA2 -RAD9A IN_SAME_COMPONENT SMARCAL1 -RAD9A IN_SAME_COMPONENT TERT -RAD9A IN_SAME_COMPONENT TIMELESS -RAD9A IN_SAME_COMPONENT TIPIN -RAD9A IN_SAME_COMPONENT TOPBP1 -RAD9A REACTS_WITH ATR -RAD9A REACTS_WITH ATRIP -RAD9A REACTS_WITH CDC6 -RAD9A REACTS_WITH CEP164 -RAD9A REACTS_WITH CHEK1 -RAD9A REACTS_WITH CLSPN -RAD9A REACTS_WITH DKC1 -RAD9A REACTS_WITH HSP90AA1 -RAD9A REACTS_WITH HUS1 -RAD9A REACTS_WITH PTGES3 -RAD9A REACTS_WITH RAD1 -RAD9A REACTS_WITH RAD17 -RAD9A REACTS_WITH RAD9A -RAD9A REACTS_WITH RFC2 -RAD9A REACTS_WITH RFC3 -RAD9A REACTS_WITH RFC4 -RAD9A REACTS_WITH RFC5 -RAD9A REACTS_WITH RPA1 -RAD9A REACTS_WITH RPA2 -RAD9A REACTS_WITH SMARCAL1 -RAD9A REACTS_WITH TERT -RAD9A REACTS_WITH TIMELESS -RAD9A REACTS_WITH TIPIN -RAD9A REACTS_WITH TOPBP1 -RAD9A STATE_CHANGE FANCD2 -RAD9A STATE_CHANGE MCM2 -RAD9A STATE_CHANGE MDM2 -RAD9A STATE_CHANGE NBN -RAF1 CO_CONTROL KSR1 -RAF1 CO_CONTROL RAF1 -RAF1 CO_CONTROL YWHAE -RAF1 IN_SAME_COMPONENT AKT1 -RAF1 IN_SAME_COMPONENT PEBP1 -RAF1 IN_SAME_COMPONENT YWHAE -RAF1 IN_SAME_COMPONENT YWHAZ -RAF1 REACTS_WITH AKT1 -RAF1 REACTS_WITH PEBP1 -RAF1 REACTS_WITH RAF1 -RAF1 REACTS_WITH YWHAE -RAF1 REACTS_WITH YWHAZ -RAF1 STATE_CHANGE KSR1 -RAF1 STATE_CHANGE MAP2K1 -RAF1 STATE_CHANGE MAP2K2 -RAF1 STATE_CHANGE RB1 -RALA REACTS_WITH RALA -RALA STATE_CHANGE SRC -RALBP1 STATE_CHANGE CDC42 -RALBP1 STATE_CHANGE RAC1 -RALB REACTS_WITH RALB -RALGDS STATE_CHANGE RALA -RANBP10 IN_SAME_COMPONENT HGF -RANBP10 IN_SAME_COMPONENT MET -RANBP10 REACTS_WITH HGF -RANBP10 REACTS_WITH MET -RANBP10 REACTS_WITH RANBP10 -RANBP10 REACTS_WITH RANBP9 -RANBP10 REACTS_WITH SOS1 -RANBP2 IN_SAME_COMPONENT RANGAP1 -RANBP2 IN_SAME_COMPONENT UBE2I -RANBP2 REACTS_WITH RANBP2 -RANBP2 REACTS_WITH RANGAP1 -RANBP2 REACTS_WITH UBE2I -RANBP2 STATE_CHANGE HDAC1 -RANBP2 STATE_CHANGE HDAC4 -RANBP2 STATE_CHANGE MDM2 -RANBP2 STATE_CHANGE RAN -RANBP2 STATE_CHANGE XPO1 -RANBP3 STATE_CHANGE CTNNB1 -RANBP9 IN_SAME_COMPONENT HGF -RANBP9 IN_SAME_COMPONENT MET -RANBP9 IN_SAME_COMPONENT SOS1 -RANBP9 REACTS_WITH HGF -RANBP9 REACTS_WITH MET -RANBP9 REACTS_WITH RANBP10 -RANBP9 REACTS_WITH RANBP9 -RANBP9 REACTS_WITH SOS1 -RANBP9 STATE_CHANGE HRAS -RANGAP1 IN_SAME_COMPONENT RANBP2 -RANGAP1 IN_SAME_COMPONENT UBE2I -RANGAP1 REACTS_WITH RANBP2 -RANGAP1 REACTS_WITH RANGAP1 -RANGAP1 REACTS_WITH UBE2I -RANGAP1 STATE_CHANGE HDAC1 -RANGAP1 STATE_CHANGE HDAC4 -RANGAP1 STATE_CHANGE MDM2 -RANGAP1 STATE_CHANGE RAN -RANGAP1 STATE_CHANGE XPO1 -RAN IN_SAME_COMPONENT HDAC1 -RAN IN_SAME_COMPONENT HDAC4 -RAN IN_SAME_COMPONENT NUP214 -RAN IN_SAME_COMPONENT XPO1 -RAN REACTS_WITH HDAC1 -RAN REACTS_WITH HDAC4 -RAN REACTS_WITH RAN -RAN REACTS_WITH XPO1 -RAN STATE_CHANGE FOXO1 -RAN STATE_CHANGE FOXO3 -RAN STATE_CHANGE FOXO4 -RAN STATE_CHANGE NFATC1 -RAN STATE_CHANGE NFATC2 -RAN STATE_CHANGE NFKB1 -RAN STATE_CHANGE NFKBIA -RAN STATE_CHANGE RELA -RAN STATE_CHANGE TPX2 -RAP1A IN_SAME_COMPONENT ARAP3 -RAP1A IN_SAME_COMPONENT RASSF5 -RAP1A REACTS_WITH ARAP3 -RAP1A REACTS_WITH RAP1A -RAP1A REACTS_WITH RASSF5 -RAP1A STATE_CHANGE RHOA -RAP1B REACTS_WITH RAP1B -RAP1B STATE_CHANGE CRK -RAP1B STATE_CHANGE PTK2B -RAP1B STATE_CHANGE PXN -RAP1GDS1 STATE_CHANGE RAC1 -RAPGEF1 IN_SAME_COMPONENT CBL -RAPGEF1 IN_SAME_COMPONENT CRK -RAPGEF1 IN_SAME_COMPONENT CRKL -RAPGEF1 IN_SAME_COMPONENT DAB1 -RAPGEF1 IN_SAME_COMPONENT GAB2 -RAPGEF1 IN_SAME_COMPONENT PDGFRA -RAPGEF1 IN_SAME_COMPONENT PTPN11 -RAPGEF1 IN_SAME_COMPONENT SH2B2 -RAPGEF1 IN_SAME_COMPONENT SORBS1 -RAPGEF1 REACTS_WITH CBL -RAPGEF1 REACTS_WITH CRK -RAPGEF1 REACTS_WITH CRKL -RAPGEF1 REACTS_WITH DAB1 -RAPGEF1 REACTS_WITH GAB2 -RAPGEF1 REACTS_WITH PDGFRA -RAPGEF1 REACTS_WITH PTPN11 -RAPGEF1 REACTS_WITH RAPGEF1 -RAPGEF1 REACTS_WITH SH2B2 -RAPGEF1 REACTS_WITH SORBS1 -RAPGEF1 STATE_CHANGE RAP1A -RAPGEF1 STATE_CHANGE RHOQ -RARA IN_SAME_COMPONENT CCNH -RARA IN_SAME_COMPONENT MAPK8 -RARA IN_SAME_COMPONENT RXRA -RARA REACTS_WITH CCNH -RARA REACTS_WITH MAPK8 -RARA REACTS_WITH RARA -RARA REACTS_WITH RXRA -RASA1 CO_CONTROL SHC1 -RASA1 CO_CONTROL SOS1 -RASA1 IN_SAME_COMPONENT AURKA -RASA1 IN_SAME_COMPONENT AURKB -RASA1 IN_SAME_COMPONENT BIRC5 -RASA1 IN_SAME_COMPONENT CSK -RASA1 IN_SAME_COMPONENT DOK1 -RASA1 IN_SAME_COMPONENT DOK2 -RASA1 IN_SAME_COMPONENT EGF -RASA1 IN_SAME_COMPONENT EGFR -RASA1 IN_SAME_COMPONENT EPHB2 -RASA1 IN_SAME_COMPONENT FCER1A -RASA1 IN_SAME_COMPONENT FCER1G -RASA1 IN_SAME_COMPONENT FCGR2B -RASA1 IN_SAME_COMPONENT GAB1 -RASA1 IN_SAME_COMPONENT GDNF -RASA1 IN_SAME_COMPONENT GFRA1 -RASA1 IN_SAME_COMPONENT GNAI1 -RASA1 IN_SAME_COMPONENT GNAI3 -RASA1 IN_SAME_COMPONENT GRLF1 -RASA1 IN_SAME_COMPONENT INPP5D -RASA1 IN_SAME_COMPONENT MS4A2 -RASA1 IN_SAME_COMPONENT NCK1 -RASA1 IN_SAME_COMPONENT PDGFB -RASA1 IN_SAME_COMPONENT PDGFRB -RASA1 IN_SAME_COMPONENT SDC2 -RASA1 IN_SAME_COMPONENT SHC1 -RASA1 IN_SAME_COMPONENT SOCS3 -RASA1 IN_SAME_COMPONENT SRC -RASA1 REACTS_WITH AURKA -RASA1 REACTS_WITH AURKB -RASA1 REACTS_WITH BIRC5 -RASA1 REACTS_WITH CSK -RASA1 REACTS_WITH DOK1 -RASA1 REACTS_WITH DOK2 -RASA1 REACTS_WITH EGF -RASA1 REACTS_WITH EGFR -RASA1 REACTS_WITH EPHB2 -RASA1 REACTS_WITH FCER1A -RASA1 REACTS_WITH FCER1G -RASA1 REACTS_WITH FCGR2B -RASA1 REACTS_WITH GAB1 -RASA1 REACTS_WITH GDNF -RASA1 REACTS_WITH GFRA1 -RASA1 REACTS_WITH GNAI1 -RASA1 REACTS_WITH GNAI3 -RASA1 REACTS_WITH GRLF1 -RASA1 REACTS_WITH INPP5D -RASA1 REACTS_WITH MS4A2 -RASA1 REACTS_WITH NCK1 -RASA1 REACTS_WITH PDGFB -RASA1 REACTS_WITH PDGFRB -RASA1 REACTS_WITH RASA1 -RASA1 REACTS_WITH SDC2 -RASA1 REACTS_WITH SHC1 -RASA1 REACTS_WITH SOCS3 -RASA1 REACTS_WITH SRC -RASA1 STATE_CHANGE CD79A -RASA1 STATE_CHANGE CD79B -RASA1 STATE_CHANGE HRAS -RASA1 STATE_CHANGE IKZF3 -RASA1 STATE_CHANGE LYN -RASA1 STATE_CHANGE MAPK8 -RASA1 STATE_CHANGE RAF1 -RASA1 STATE_CHANGE RHOA -RASGRF1 STATE_CHANGE HRAS -RASGRF1 STATE_CHANGE RAC1 -RASGRF2 STATE_CHANGE RAC1 -RASGRP2 STATE_CHANGE RAP1A -RASSF1 CO_CONTROL DAXX -RASSF1 CO_CONTROL USP7 -RASSF1 STATE_CHANGE MDM2 -RASSF5 IN_SAME_COMPONENT RAP1A -RASSF5 REACTS_WITH RAP1A -RASSF5 REACTS_WITH RASSF5 -RB1CC1 IN_SAME_COMPONENT ATG13 -RB1CC1 IN_SAME_COMPONENT MLST8 -RB1CC1 IN_SAME_COMPONENT MTOR -RB1CC1 IN_SAME_COMPONENT RPTOR -RB1CC1 REACTS_WITH ATG13 -RB1CC1 REACTS_WITH MLST8 -RB1CC1 REACTS_WITH MTOR -RB1CC1 REACTS_WITH RB1CC1 -RB1CC1 REACTS_WITH RPTOR -RB1 CO_CONTROL E2F1 -RB1 CO_CONTROL PRMT5 -RB1 CO_CONTROL TFDP1 -RB1 IN_SAME_COMPONENT AATF -RB1 IN_SAME_COMPONENT ABL1 -RB1 IN_SAME_COMPONENT CBX4 -RB1 IN_SAME_COMPONENT CEBPA -RB1 IN_SAME_COMPONENT CTBP1 -RB1 IN_SAME_COMPONENT DNMT1 -RB1 IN_SAME_COMPONENT E2F1 -RB1 IN_SAME_COMPONENT E2F4 -RB1 IN_SAME_COMPONENT ELF1 -RB1 IN_SAME_COMPONENT HDAC1 -RB1 IN_SAME_COMPONENT HDAC3 -RB1 IN_SAME_COMPONENT HES1 -RB1 IN_SAME_COMPONENT JUN -RB1 IN_SAME_COMPONENT PPARG -RB1 IN_SAME_COMPONENT RBBP4 -RB1 IN_SAME_COMPONENT RUNX2 -RB1 IN_SAME_COMPONENT SKP2 -RB1 IN_SAME_COMPONENT SMARCA2 -RB1 IN_SAME_COMPONENT SPI1 -RB1 IN_SAME_COMPONENT SUV39H1 -RB1 IN_SAME_COMPONENT TFDP1 -RB1 METABOLIC_CATALYSIS BGLAP -RB1 METABOLIC_CATALYSIS BRD2 -RB1 METABOLIC_CATALYSIS CASP7 -RB1 METABOLIC_CATALYSIS CDKN1A -RB1 METABOLIC_CATALYSIS MET -RB1 METABOLIC_CATALYSIS MYC -RB1 METABOLIC_CATALYSIS RBL1 -RB1 METABOLIC_CATALYSIS SFTPD -RB1 METABOLIC_CATALYSIS TGFB2 -RB1 REACTS_WITH AATF -RB1 REACTS_WITH ABL1 -RB1 REACTS_WITH CBX4 -RB1 REACTS_WITH CDKN1B -RB1 REACTS_WITH CEBPA -RB1 REACTS_WITH CTBP1 -RB1 REACTS_WITH DNMT1 -RB1 REACTS_WITH E2F4 -RB1 REACTS_WITH ELF1 -RB1 REACTS_WITH GSC -RB1 REACTS_WITH HDAC1 -RB1 REACTS_WITH HDAC3 -RB1 REACTS_WITH HES1 -RB1 REACTS_WITH JUN -RB1 REACTS_WITH PPARG -RB1 REACTS_WITH RB1 -RB1 REACTS_WITH RBBP4 -RB1 REACTS_WITH RUNX2 -RB1 REACTS_WITH SKP2 -RB1 REACTS_WITH SMARCA2 -RB1 REACTS_WITH SPI1 -RB1 REACTS_WITH SUV39H1 -RB1 REACTS_WITH TFDP1 -RB1 STATE_CHANGE ATF2 -RB1 STATE_CHANGE MEF2C -RB1 STATE_CHANGE SPI1 -RB1 STATE_CHANGE TAF1 -RB1 STATE_CHANGE TBP -RBBP4 CO_CONTROL ARRB2 -RBBP4 CO_CONTROL CITED1 -RBBP4 CO_CONTROL PRMT5 -RBBP4 CO_CONTROL SMO -RBBP4 CO_CONTROL TFDP1 -RBBP4 IN_SAME_COMPONENT CHD3 -RBBP4 IN_SAME_COMPONENT CHD4 -RBBP4 IN_SAME_COMPONENT CTBP1 -RBBP4 IN_SAME_COMPONENT GATA1 -RBBP4 IN_SAME_COMPONENT GATAD2A -RBBP4 IN_SAME_COMPONENT GATAD2B -RBBP4 IN_SAME_COMPONENT HDAC1 -RBBP4 IN_SAME_COMPONENT HDAC2 -RBBP4 IN_SAME_COMPONENT HDAC3 -RBBP4 IN_SAME_COMPONENT MAX -RBBP4 IN_SAME_COMPONENT MBD2 -RBBP4 IN_SAME_COMPONENT MBD3 -RBBP4 IN_SAME_COMPONENT MBD3L2 -RBBP4 IN_SAME_COMPONENT MTA2 -RBBP4 IN_SAME_COMPONENT MXD1 -RBBP4 IN_SAME_COMPONENT NCOR1 -RBBP4 IN_SAME_COMPONENT RB1 -RBBP4 IN_SAME_COMPONENT RBBP7 -RBBP4 IN_SAME_COMPONENT SAP18 -RBBP4 IN_SAME_COMPONENT SAP30 -RBBP4 IN_SAME_COMPONENT SIN3A -RBBP4 IN_SAME_COMPONENT SIN3B -RBBP4 IN_SAME_COMPONENT SKI -RBBP4 IN_SAME_COMPONENT SKIL -RBBP4 IN_SAME_COMPONENT SMAD2 -RBBP4 IN_SAME_COMPONENT SMAD4 -RBBP4 IN_SAME_COMPONENT SUFU -RBBP4 IN_SAME_COMPONENT TFDP1 -RBBP4 IN_SAME_COMPONENT TGIF1 -RBBP4 IN_SAME_COMPONENT UBE3A -RBBP4 IN_SAME_COMPONENT ZFPM1 -RBBP4 METABOLIC_CATALYSIS TERT -RBBP4 REACTS_WITH CHD3 -RBBP4 REACTS_WITH CHD4 -RBBP4 REACTS_WITH GATA1 -RBBP4 REACTS_WITH GATAD2A -RBBP4 REACTS_WITH GATAD2B -RBBP4 REACTS_WITH HDAC1 -RBBP4 REACTS_WITH HDAC2 -RBBP4 REACTS_WITH HDAC3 -RBBP4 REACTS_WITH MAX -RBBP4 REACTS_WITH MBD2 -RBBP4 REACTS_WITH MBD3 -RBBP4 REACTS_WITH MBD3L2 -RBBP4 REACTS_WITH MTA2 -RBBP4 REACTS_WITH MXD1 -RBBP4 REACTS_WITH NCOR1 -RBBP4 REACTS_WITH PRMT5 -RBBP4 REACTS_WITH RB1 -RBBP4 REACTS_WITH RBBP4 -RBBP4 REACTS_WITH RBBP7 -RBBP4 REACTS_WITH SAP18 -RBBP4 REACTS_WITH SAP30 -RBBP4 REACTS_WITH SIN3A -RBBP4 REACTS_WITH SIN3B -RBBP4 REACTS_WITH SKIL -RBBP4 REACTS_WITH SMAD2 -RBBP4 REACTS_WITH SMAD4 -RBBP4 REACTS_WITH SUFU -RBBP4 REACTS_WITH TFDP1 -RBBP4 REACTS_WITH UBE3A -RBBP4 REACTS_WITH WDR77 -RBBP4 REACTS_WITH ZFPM1 -RBBP4 STATE_CHANGE GLI1 -RBBP4 STATE_CHANGE GLI3 -RBBP4 STATE_CHANGE SMAD2 -RBBP4 STATE_CHANGE SMAD4 -RBBP7 CO_CONTROL ARRB2 -RBBP7 CO_CONTROL CITED1 -RBBP7 CO_CONTROL SMO -RBBP7 IN_SAME_COMPONENT CHD3 -RBBP7 IN_SAME_COMPONENT CHD4 -RBBP7 IN_SAME_COMPONENT CTBP1 -RBBP7 IN_SAME_COMPONENT GATA1 -RBBP7 IN_SAME_COMPONENT GATAD2A -RBBP7 IN_SAME_COMPONENT GATAD2B -RBBP7 IN_SAME_COMPONENT HDAC1 -RBBP7 IN_SAME_COMPONENT HDAC2 -RBBP7 IN_SAME_COMPONENT MAX -RBBP7 IN_SAME_COMPONENT MBD2 -RBBP7 IN_SAME_COMPONENT MBD3 -RBBP7 IN_SAME_COMPONENT MBD3L2 -RBBP7 IN_SAME_COMPONENT MTA2 -RBBP7 IN_SAME_COMPONENT MXD1 -RBBP7 IN_SAME_COMPONENT NCOR1 -RBBP7 IN_SAME_COMPONENT RBBP4 -RBBP7 IN_SAME_COMPONENT SAP18 -RBBP7 IN_SAME_COMPONENT SAP30 -RBBP7 IN_SAME_COMPONENT SIN3A -RBBP7 IN_SAME_COMPONENT SIN3B -RBBP7 IN_SAME_COMPONENT SKI -RBBP7 IN_SAME_COMPONENT SKIL -RBBP7 IN_SAME_COMPONENT SMAD2 -RBBP7 IN_SAME_COMPONENT SMAD4 -RBBP7 IN_SAME_COMPONENT SUFU -RBBP7 IN_SAME_COMPONENT TGIF1 -RBBP7 IN_SAME_COMPONENT UBE3A -RBBP7 IN_SAME_COMPONENT ZFPM1 -RBBP7 METABOLIC_CATALYSIS TERT -RBBP7 REACTS_WITH CHD3 -RBBP7 REACTS_WITH CHD4 -RBBP7 REACTS_WITH GATA1 -RBBP7 REACTS_WITH GATAD2A -RBBP7 REACTS_WITH GATAD2B -RBBP7 REACTS_WITH HDAC1 -RBBP7 REACTS_WITH HDAC2 -RBBP7 REACTS_WITH MAX -RBBP7 REACTS_WITH MBD2 -RBBP7 REACTS_WITH MBD3 -RBBP7 REACTS_WITH MBD3L2 -RBBP7 REACTS_WITH MTA2 -RBBP7 REACTS_WITH MXD1 -RBBP7 REACTS_WITH NCOR1 -RBBP7 REACTS_WITH PRMT5 -RBBP7 REACTS_WITH RBBP4 -RBBP7 REACTS_WITH RBBP7 -RBBP7 REACTS_WITH SAP18 -RBBP7 REACTS_WITH SAP30 -RBBP7 REACTS_WITH SIN3A -RBBP7 REACTS_WITH SIN3B -RBBP7 REACTS_WITH SKIL -RBBP7 REACTS_WITH SMAD2 -RBBP7 REACTS_WITH SMAD4 -RBBP7 REACTS_WITH SUFU -RBBP7 REACTS_WITH UBE3A -RBBP7 REACTS_WITH WDR77 -RBBP7 REACTS_WITH ZFPM1 -RBBP7 STATE_CHANGE GLI1 -RBBP7 STATE_CHANGE GLI3 -RBBP7 STATE_CHANGE SMAD2 -RBBP7 STATE_CHANGE SMAD4 -RBBP8 CO_CONTROL NOTCH1 -RBBP8 CO_CONTROL RBPJ -RBBP8 IN_SAME_COMPONENT BARD1 -RBBP8 IN_SAME_COMPONENT BRCA1 -RBBP8 IN_SAME_COMPONENT CTBP1 -RBBP8 IN_SAME_COMPONENT KDM1A -RBBP8 IN_SAME_COMPONENT MRE11A -RBBP8 IN_SAME_COMPONENT NBN -RBBP8 IN_SAME_COMPONENT RAD50 -RBBP8 IN_SAME_COMPONENT RBPJ -RBBP8 IN_SAME_COMPONENT SPEN -RBBP8 METABOLIC_CATALYSIS HEY1 -RBBP8 REACTS_WITH ATM -RBBP8 REACTS_WITH BARD1 -RBBP8 REACTS_WITH BRCA1 -RBBP8 REACTS_WITH CTBP1 -RBBP8 REACTS_WITH H2AFX -RBBP8 REACTS_WITH KDM1A -RBBP8 REACTS_WITH MDC1 -RBBP8 REACTS_WITH MRE11A -RBBP8 REACTS_WITH NBN -RBBP8 REACTS_WITH NOTCH1 -RBBP8 REACTS_WITH RAD50 -RBBP8 REACTS_WITH RBBP8 -RBBP8 REACTS_WITH RBPJ -RBBP8 REACTS_WITH RNF8 -RBBP8 REACTS_WITH SPEN -RBBP8 REACTS_WITH TP53BP1 -RBL1 CO_CONTROL CEBPB -RBL1 CO_CONTROL E2F1 -RBL1 CO_CONTROL MAX -RBL1 CO_CONTROL MYC -RBL1 IN_SAME_COMPONENT SMAD4 -RBL1 IN_SAME_COMPONENT TFDP1 -RBL1 METABOLIC_CATALYSIS MYC -RBL1 METABOLIC_CATALYSIS RBL1 -RBP1 REACTS_WITH RBP1 -RBP1 STATE_CHANGE AKT1 -RBP2 METABOLIC_CATALYSIS BRD2 -RBPJ CO_CONTROL CTBP1 -RBPJ CO_CONTROL EP300 -RBPJ CO_CONTROL GATA3 -RBPJ CO_CONTROL HDAC1 -RBPJ CO_CONTROL HES1 -RBPJ CO_CONTROL KDM1A -RBPJ CO_CONTROL NOTCH1 -RBPJ CO_CONTROL RBBP8 -RBPJ CO_CONTROL RBPJ -RBPJ CO_CONTROL SPEN -RBPJ CO_CONTROL TWIST1 -RBPJ IN_SAME_COMPONENT CTBP1 -RBPJ IN_SAME_COMPONENT EP300 -RBPJ IN_SAME_COMPONENT HDAC1 -RBPJ IN_SAME_COMPONENT HES1 -RBPJ IN_SAME_COMPONENT HEY1 -RBPJ IN_SAME_COMPONENT KDM1A -RBPJ IN_SAME_COMPONENT NOTCH1 -RBPJ IN_SAME_COMPONENT RBBP8 -RBPJ IN_SAME_COMPONENT SPEN -RBPJ METABOLIC_CATALYSIS CCND1 -RBPJ METABOLIC_CATALYSIS CDKN1A -RBPJ METABOLIC_CATALYSIS GATA3 -RBPJ METABOLIC_CATALYSIS HES1 -RBPJ METABOLIC_CATALYSIS HEY1 -RBPJ METABOLIC_CATALYSIS HEY2 -RBPJ METABOLIC_CATALYSIS IL4 -RBPJ METABOLIC_CATALYSIS PTCRA -RBPJ METABOLIC_CATALYSIS SKP2 -RBPJ REACTS_WITH CTBP1 -RBPJ REACTS_WITH EP300 -RBPJ REACTS_WITH HDAC1 -RBPJ REACTS_WITH HES1 -RBPJ REACTS_WITH HEY1 -RBPJ REACTS_WITH KDM1A -RBPJ REACTS_WITH NOTCH1 -RBPJ REACTS_WITH RBBP8 -RBPJ REACTS_WITH RBPJ -RBPJ REACTS_WITH SPEN -RBX1 IN_SAME_COMPONENT CUL2 -RBX1 IN_SAME_COMPONENT HIF1A -RBX1 IN_SAME_COMPONENT TCEB1 -RBX1 IN_SAME_COMPONENT TCEB2 -RBX1 IN_SAME_COMPONENT VHL -RBX1 REACTS_WITH CUL2 -RBX1 REACTS_WITH HIF1A -RBX1 REACTS_WITH RBX1 -RBX1 REACTS_WITH TCEB1 -RBX1 REACTS_WITH TCEB2 -RBX1 REACTS_WITH VHL -RCAN1 REACTS_WITH RCAN1 -RCAN2 REACTS_WITH RCAN2 -RELA CO_CONTROL IKBKB -RELA CO_CONTROL NFKBIA -RELA CO_CONTROL NFKBIB -RELA IN_SAME_COMPONENT ARRB2 -RELA IN_SAME_COMPONENT BCL3 -RELA IN_SAME_COMPONENT HDAC2 -RELA IN_SAME_COMPONENT NFKB1 -RELA IN_SAME_COMPONENT NFKBIA -RELA IN_SAME_COMPONENT NFKBIB -RELA INTERACTS_WITH NFKB1 -RELA INTERACTS_WITH NFKBIA -RELA INTERACTS_WITH RELA -RELA METABOLIC_CATALYSIS BAX -RELA METABOLIC_CATALYSIS BIRC3 -RELA METABOLIC_CATALYSIS CSF2 -RELA METABOLIC_CATALYSIS ICAM1 -RELA METABOLIC_CATALYSIS IL17A -RELA METABOLIC_CATALYSIS IL23A -RELA METABOLIC_CATALYSIS IL6 -RELA METABOLIC_CATALYSIS IL8 -RELA METABOLIC_CATALYSIS MYC -RELA METABOLIC_CATALYSIS NFKBIA -RELA METABOLIC_CATALYSIS NFKBIB -RELA METABOLIC_CATALYSIS SELE -RELA METABOLIC_CATALYSIS TNFAIP3 -RELA REACTS_WITH ARRB2 -RELA REACTS_WITH BCL3 -RELA REACTS_WITH HDAC2 -RELA REACTS_WITH HDAC3 -RELA REACTS_WITH MMP9 -RELA REACTS_WITH NFKB1 -RELA REACTS_WITH NFKBIA -RELA REACTS_WITH NFKBIB -RELA REACTS_WITH NR3C1 -RELA REACTS_WITH PIK3CA -RELA REACTS_WITH PIK3R1 -RELA REACTS_WITH PLAU -RELA REACTS_WITH RELA -RELA STATE_CHANGE BCL2A1 -RELA STATE_CHANGE CASP8 -RELA STATE_CHANGE NFKB1 -RELA STATE_CHANGE NFKBIA -RELA STATE_CHANGE NFKBIB -RELA STATE_CHANGE POU2F2 -RELA STATE_CHANGE RELA -RELB IN_SAME_COMPONENT NFKB1 -RELB IN_SAME_COMPONENT NFKB2 -RELB REACTS_WITH NFKB1 -RELB REACTS_WITH NFKB2 -RELB REACTS_WITH RELB -REL CO_CONTROL AR -REL CO_CONTROL POU2F1 -REL IN_SAME_COMPONENT NFKB1 -REL METABOLIC_CATALYSIS KLK3 -RELN IN_SAME_COMPONENT ARHGEF2 -RELN IN_SAME_COMPONENT DAB1 -RELN IN_SAME_COMPONENT FYN -RELN IN_SAME_COMPONENT GRIN2A -RELN IN_SAME_COMPONENT GRIN2B -RELN IN_SAME_COMPONENT LRP8 -RELN IN_SAME_COMPONENT MAP2K7 -RELN IN_SAME_COMPONENT MAP3K11 -RELN IN_SAME_COMPONENT MAPK8 -RELN IN_SAME_COMPONENT PAFAH1B1 -RELN IN_SAME_COMPONENT PAFAH1B2 -RELN IN_SAME_COMPONENT PAFAH1B3 -RELN IN_SAME_COMPONENT PIK3CA -RELN IN_SAME_COMPONENT PIK3R1 -RELN IN_SAME_COMPONENT VLDLR -RELN INTERACTS_WITH DAB1 -RELN INTERACTS_WITH FYN -RELN INTERACTS_WITH LRP8 -RELN INTERACTS_WITH RELN -RELN INTERACTS_WITH VLDLR -RELN REACTS_WITH ARHGEF2 -RELN REACTS_WITH DAB1 -RELN REACTS_WITH FYN -RELN REACTS_WITH GRIN2A -RELN REACTS_WITH GRIN2B -RELN REACTS_WITH LRP8 -RELN REACTS_WITH MAP2K7 -RELN REACTS_WITH MAP3K11 -RELN REACTS_WITH MAPK8 -RELN REACTS_WITH PAFAH1B1 -RELN REACTS_WITH PAFAH1B2 -RELN REACTS_WITH PAFAH1B3 -RELN REACTS_WITH PIK3CA -RELN REACTS_WITH PIK3R1 -RELN REACTS_WITH RELN -RELN REACTS_WITH VLDLR -RELN STATE_CHANGE ABL1 -RELN STATE_CHANGE AKT1 -RELN STATE_CHANGE CRKL -RELN STATE_CHANGE DAB1 -RELN STATE_CHANGE ITGA3 -RELN STATE_CHANGE ITGB1 -RELN STATE_CHANGE MAP1B -RELN STATE_CHANGE NCK2 -RELN STATE_CHANGE PAFAH1B1 -RELN STATE_CHANGE RAPGEF1 -REL REACTS_WITH NFKB1 -REL REACTS_WITH REL -RFC2 IN_SAME_COMPONENT ATR -RFC2 IN_SAME_COMPONENT ATRIP -RFC2 IN_SAME_COMPONENT CDC6 -RFC2 IN_SAME_COMPONENT CEP164 -RFC2 IN_SAME_COMPONENT CHEK1 -RFC2 IN_SAME_COMPONENT CLSPN -RFC2 IN_SAME_COMPONENT HUS1 -RFC2 IN_SAME_COMPONENT RAD1 -RFC2 IN_SAME_COMPONENT RAD17 -RFC2 IN_SAME_COMPONENT RAD9A -RFC2 IN_SAME_COMPONENT RFC3 -RFC2 IN_SAME_COMPONENT RFC4 -RFC2 IN_SAME_COMPONENT RFC5 -RFC2 IN_SAME_COMPONENT RPA1 -RFC2 IN_SAME_COMPONENT RPA2 -RFC2 IN_SAME_COMPONENT SMARCAL1 -RFC2 IN_SAME_COMPONENT TIMELESS -RFC2 IN_SAME_COMPONENT TIPIN -RFC2 IN_SAME_COMPONENT TOPBP1 -RFC2 REACTS_WITH ATR -RFC2 REACTS_WITH ATRIP -RFC2 REACTS_WITH CDC6 -RFC2 REACTS_WITH CEP164 -RFC2 REACTS_WITH CHEK1 -RFC2 REACTS_WITH CLSPN -RFC2 REACTS_WITH HUS1 -RFC2 REACTS_WITH RAD1 -RFC2 REACTS_WITH RAD17 -RFC2 REACTS_WITH RAD9A -RFC2 REACTS_WITH RFC2 -RFC2 REACTS_WITH RFC3 -RFC2 REACTS_WITH RFC4 -RFC2 REACTS_WITH RFC5 -RFC2 REACTS_WITH RPA1 -RFC2 REACTS_WITH RPA2 -RFC2 REACTS_WITH SMARCAL1 -RFC2 REACTS_WITH TIMELESS -RFC2 REACTS_WITH TIPIN -RFC2 REACTS_WITH TOPBP1 -RFC2 STATE_CHANGE FANCD2 -RFC2 STATE_CHANGE MCM2 -RFC2 STATE_CHANGE MDM2 -RFC2 STATE_CHANGE NBN -RFC3 IN_SAME_COMPONENT ATR -RFC3 IN_SAME_COMPONENT ATRIP -RFC3 IN_SAME_COMPONENT CDC6 -RFC3 IN_SAME_COMPONENT CEP164 -RFC3 IN_SAME_COMPONENT CHEK1 -RFC3 IN_SAME_COMPONENT CLSPN -RFC3 IN_SAME_COMPONENT HUS1 -RFC3 IN_SAME_COMPONENT RAD1 -RFC3 IN_SAME_COMPONENT RAD17 -RFC3 IN_SAME_COMPONENT RAD9A -RFC3 IN_SAME_COMPONENT RFC2 -RFC3 IN_SAME_COMPONENT RFC4 -RFC3 IN_SAME_COMPONENT RFC5 -RFC3 IN_SAME_COMPONENT RPA1 -RFC3 IN_SAME_COMPONENT RPA2 -RFC3 IN_SAME_COMPONENT SMARCAL1 -RFC3 IN_SAME_COMPONENT TIMELESS -RFC3 IN_SAME_COMPONENT TIPIN -RFC3 IN_SAME_COMPONENT TOPBP1 -RFC3 REACTS_WITH ATR -RFC3 REACTS_WITH ATRIP -RFC3 REACTS_WITH CDC6 -RFC3 REACTS_WITH CEP164 -RFC3 REACTS_WITH CHEK1 -RFC3 REACTS_WITH CLSPN -RFC3 REACTS_WITH HUS1 -RFC3 REACTS_WITH RAD1 -RFC3 REACTS_WITH RAD17 -RFC3 REACTS_WITH RAD9A -RFC3 REACTS_WITH RFC2 -RFC3 REACTS_WITH RFC3 -RFC3 REACTS_WITH RFC4 -RFC3 REACTS_WITH RFC5 -RFC3 REACTS_WITH RPA1 -RFC3 REACTS_WITH RPA2 -RFC3 REACTS_WITH SMARCAL1 -RFC3 REACTS_WITH TIMELESS -RFC3 REACTS_WITH TIPIN -RFC3 REACTS_WITH TOPBP1 -RFC3 STATE_CHANGE FANCD2 -RFC3 STATE_CHANGE MCM2 -RFC3 STATE_CHANGE MDM2 -RFC3 STATE_CHANGE NBN -RFC4 IN_SAME_COMPONENT ATR -RFC4 IN_SAME_COMPONENT ATRIP -RFC4 IN_SAME_COMPONENT CDC6 -RFC4 IN_SAME_COMPONENT CEP164 -RFC4 IN_SAME_COMPONENT CHEK1 -RFC4 IN_SAME_COMPONENT CLSPN -RFC4 IN_SAME_COMPONENT HUS1 -RFC4 IN_SAME_COMPONENT RAD1 -RFC4 IN_SAME_COMPONENT RAD17 -RFC4 IN_SAME_COMPONENT RAD9A -RFC4 IN_SAME_COMPONENT RFC2 -RFC4 IN_SAME_COMPONENT RFC3 -RFC4 IN_SAME_COMPONENT RFC5 -RFC4 IN_SAME_COMPONENT RPA1 -RFC4 IN_SAME_COMPONENT RPA2 -RFC4 IN_SAME_COMPONENT SMARCAL1 -RFC4 IN_SAME_COMPONENT TIMELESS -RFC4 IN_SAME_COMPONENT TIPIN -RFC4 IN_SAME_COMPONENT TOPBP1 -RFC4 REACTS_WITH ATR -RFC4 REACTS_WITH ATRIP -RFC4 REACTS_WITH CDC6 -RFC4 REACTS_WITH CEP164 -RFC4 REACTS_WITH CHEK1 -RFC4 REACTS_WITH CLSPN -RFC4 REACTS_WITH HUS1 -RFC4 REACTS_WITH RAD1 -RFC4 REACTS_WITH RAD17 -RFC4 REACTS_WITH RAD9A -RFC4 REACTS_WITH RFC2 -RFC4 REACTS_WITH RFC3 -RFC4 REACTS_WITH RFC4 -RFC4 REACTS_WITH RFC5 -RFC4 REACTS_WITH RPA1 -RFC4 REACTS_WITH RPA2 -RFC4 REACTS_WITH SMARCAL1 -RFC4 REACTS_WITH TIMELESS -RFC4 REACTS_WITH TIPIN -RFC4 REACTS_WITH TOPBP1 -RFC4 STATE_CHANGE FANCD2 -RFC4 STATE_CHANGE MCM2 -RFC4 STATE_CHANGE MDM2 -RFC4 STATE_CHANGE NBN -RFC5 IN_SAME_COMPONENT ATR -RFC5 IN_SAME_COMPONENT ATRIP -RFC5 IN_SAME_COMPONENT CDC6 -RFC5 IN_SAME_COMPONENT CEP164 -RFC5 IN_SAME_COMPONENT CHEK1 -RFC5 IN_SAME_COMPONENT CLSPN -RFC5 IN_SAME_COMPONENT HUS1 -RFC5 IN_SAME_COMPONENT RAD1 -RFC5 IN_SAME_COMPONENT RAD17 -RFC5 IN_SAME_COMPONENT RAD9A -RFC5 IN_SAME_COMPONENT RFC2 -RFC5 IN_SAME_COMPONENT RFC3 -RFC5 IN_SAME_COMPONENT RFC4 -RFC5 IN_SAME_COMPONENT RPA1 -RFC5 IN_SAME_COMPONENT RPA2 -RFC5 IN_SAME_COMPONENT SMARCAL1 -RFC5 IN_SAME_COMPONENT TIMELESS -RFC5 IN_SAME_COMPONENT TIPIN -RFC5 IN_SAME_COMPONENT TOPBP1 -RFC5 REACTS_WITH ATR -RFC5 REACTS_WITH ATRIP -RFC5 REACTS_WITH CDC6 -RFC5 REACTS_WITH CEP164 -RFC5 REACTS_WITH CHEK1 -RFC5 REACTS_WITH CLSPN -RFC5 REACTS_WITH HUS1 -RFC5 REACTS_WITH RAD1 -RFC5 REACTS_WITH RAD17 -RFC5 REACTS_WITH RAD9A -RFC5 REACTS_WITH RFC2 -RFC5 REACTS_WITH RFC3 -RFC5 REACTS_WITH RFC4 -RFC5 REACTS_WITH RFC5 -RFC5 REACTS_WITH RPA1 -RFC5 REACTS_WITH RPA2 -RFC5 REACTS_WITH SMARCAL1 -RFC5 REACTS_WITH TIMELESS -RFC5 REACTS_WITH TIPIN -RFC5 REACTS_WITH TOPBP1 -RFC5 STATE_CHANGE FANCD2 -RFC5 STATE_CHANGE MCM2 -RFC5 STATE_CHANGE MDM2 -RFC5 STATE_CHANGE NBN -RFFL STATE_CHANGE RIPK1 -RFFL STATE_CHANGE TNF -RFFL STATE_CHANGE TNFRSF1A -RFFL STATE_CHANGE TRADD -RFFL STATE_CHANGE TRAF2 -RFXANK IN_SAME_COMPONENT HDAC4 -RFXANK IN_SAME_COMPONENT HDAC5 -RFXANK REACTS_WITH HDAC4 -RFXANK REACTS_WITH HDAC5 -RFXANK REACTS_WITH RFXANK -RGNEF STATE_CHANGE RHOA -RGS19 IN_SAME_COMPONENT GIPC1 -RGS19 IN_SAME_COMPONENT NGF -RGS19 REACTS_WITH GIPC1 -RGS19 REACTS_WITH NGF -RGS19 REACTS_WITH RGS19 -RGS1 STATE_CHANGE BCAR1 -RGS1 STATE_CHANGE CD247 -RGS1 STATE_CHANGE CD3D -RGS1 STATE_CHANGE CD3E -RGS1 STATE_CHANGE CD3G -RGS1 STATE_CHANGE CD4 -RGS1 STATE_CHANGE HLA-DRA -RGS1 STATE_CHANGE HLA-DRB1 -RGS1 STATE_CHANGE LCK -RGS1 STATE_CHANGE PXN -RGS3 IN_SAME_COMPONENT EFNB1 -RGS3 REACTS_WITH EFNB1 -RGS3 REACTS_WITH RGS3 -RGS9BP IN_SAME_COMPONENT GNB5 -RGS9BP IN_SAME_COMPONENT RGS9 -RGS9BP STATE_CHANGE GNAT1 -RGS9BP STATE_CHANGE GNAT2 -RGS9BP STATE_CHANGE PDE6A -RGS9BP STATE_CHANGE PDE6B -RGS9BP STATE_CHANGE PDE6C -RGS9BP STATE_CHANGE PDE6G -RGS9BP STATE_CHANGE PDE6H -RGS9 IN_SAME_COMPONENT GNB5 -RGS9 IN_SAME_COMPONENT RGS9BP -RGS9 STATE_CHANGE GNAT1 -RGS9 STATE_CHANGE GNAT2 -RGS9 STATE_CHANGE PDE6A -RGS9 STATE_CHANGE PDE6B -RGS9 STATE_CHANGE PDE6C -RGS9 STATE_CHANGE PDE6G -RGS9 STATE_CHANGE PDE6H -RHEB CO_CONTROL AKT1 -RHEB IN_SAME_COMPONENT BNIP3 -RHEB REACTS_WITH BNIP3 -RHEB REACTS_WITH RHEB -RHEB STATE_CHANGE AKT1S1 -RHEB STATE_CHANGE DEPTOR -RHEB STATE_CHANGE MLST8 -RHEB STATE_CHANGE MTOR -RHEB STATE_CHANGE RPTOR -RHOA CO_CONTROL BCAR1 -RHOA CO_CONTROL FN1 -RHOA CO_CONTROL PLK1 -RHOA CO_CONTROL RAC1 -RHOA CO_CONTROL S1PR2 -RHOA CO_CONTROL SDC4 -RHOA IN_SAME_COMPONENT ARHGDIA -RHOA IN_SAME_COMPONENT ARHGDIB -RHOA IN_SAME_COMPONENT ARHGDIG -RHOA IN_SAME_COMPONENT CTNND1 -RHOA IN_SAME_COMPONENT HSP90AA1 -RHOA IN_SAME_COMPONENT ITGAV -RHOA IN_SAME_COMPONENT ITGB3 -RHOA IN_SAME_COMPONENT KDR -RHOA IN_SAME_COMPONENT ROCK1 -RHOA IN_SAME_COMPONENT VEGFA -RHOA INTERACTS_WITH ADAM12 -RHOA INTERACTS_WITH ITGAV -RHOA INTERACTS_WITH ITGB3 -RHOA INTERACTS_WITH PRKCA -RHOA INTERACTS_WITH PXN -RHOA INTERACTS_WITH RAC1 -RHOA INTERACTS_WITH SDC4 -RHOA METABOLIC_CATALYSIS FOS -RHOA REACTS_WITH ARHGDIA -RHOA REACTS_WITH ARHGDIB -RHOA REACTS_WITH ARHGDIG -RHOA REACTS_WITH CDH1 -RHOA REACTS_WITH CTNNA1 -RHOA REACTS_WITH CTNNB1 -RHOA REACTS_WITH CTNND1 -RHOA REACTS_WITH HSP90AA1 -RHOA REACTS_WITH ITGAV -RHOA REACTS_WITH ITGB3 -RHOA REACTS_WITH KDR -RHOA REACTS_WITH LINGO1 -RHOA REACTS_WITH NGFR -RHOA REACTS_WITH PLD2 -RHOA REACTS_WITH RHOA -RHOA REACTS_WITH ROCK1 -RHOA REACTS_WITH RTN4R -RHOA REACTS_WITH VEGFA -RHOA STATE_CHANGE AKT1 -RHOA STATE_CHANGE CDH5 -RHOA STATE_CHANGE CDKN1B -RHOA STATE_CHANGE DIAPH1 -RHOA STATE_CHANGE EZR -RHOA STATE_CHANGE FYN -RHOA STATE_CHANGE GAB2 -RHOA STATE_CHANGE IL2 -RHOA STATE_CHANGE IL2RA -RHOA STATE_CHANGE IL2RB -RHOA STATE_CHANGE IL2RG -RHOA STATE_CHANGE ITGA4 -RHOA STATE_CHANGE ITGB7 -RHOA STATE_CHANGE JAK1 -RHOA STATE_CHANGE JAK3 -RHOA STATE_CHANGE LCK -RHOA STATE_CHANGE MADCAM1 -RHOA STATE_CHANGE MYH2 -RHOA STATE_CHANGE PIK3CA -RHOA STATE_CHANGE PIK3R1 -RHOA STATE_CHANGE PKN1 -RHOA STATE_CHANGE PKN2 -RHOA STATE_CHANGE PTPN1 -RHOA STATE_CHANGE PTPN11 -RHOA STATE_CHANGE RAC1 -RHOA STATE_CHANGE ROCK1 -RHOA STATE_CHANGE ROCK2 -RHOA STATE_CHANGE SDC2 -RHOA STATE_CHANGE SHC1 -RHOA STATE_CHANGE SOS1 -RHOC STATE_CHANGE ROCK1 -RHO IN_SAME_COMPONENT GNAT1 -RHO IN_SAME_COMPONENT GNGT1 -RHO IN_SAME_COMPONENT SAG -RHOQ CO_CONTROL CALM1 -RHOQ CO_CONTROL STX4 -RHOQ CO_CONTROL STXBP4 -RHOQ CO_CONTROL VAMP2 -RHOQ IN_SAME_COMPONENT TRIP10 -RHOQ REACTS_WITH EXOC1 -RHOQ REACTS_WITH EXOC2 -RHOQ REACTS_WITH EXOC3 -RHOQ REACTS_WITH EXOC4 -RHOQ REACTS_WITH EXOC5 -RHOQ REACTS_WITH EXOC6 -RHOQ REACTS_WITH EXOC7 -RHOQ REACTS_WITH RHOQ -RHOQ REACTS_WITH TRIP10 -RHOQ STATE_CHANGE F2RL2 -RHOQ STATE_CHANGE LNPEP -RHOQ STATE_CHANGE PARD6A -RHOQ STATE_CHANGE SLC2A4 -RHOQ STATE_CHANGE VAMP2 -RHO REACTS_WITH GNAT1 -RHO REACTS_WITH GNGT1 -RHO REACTS_WITH RHO -RHO REACTS_WITH SAG -RICTOR IN_SAME_COMPONENT DEPTOR -RICTOR IN_SAME_COMPONENT MAPKAP1 -RICTOR IN_SAME_COMPONENT MLST8 -RICTOR IN_SAME_COMPONENT MTOR -RICTOR REACTS_WITH DEPTOR -RICTOR REACTS_WITH MAPKAP1 -RICTOR REACTS_WITH MLST8 -RICTOR REACTS_WITH MTOR -RICTOR REACTS_WITH RICTOR -RICTOR STATE_CHANGE AKT1 -RICTOR STATE_CHANGE PRKCA -RICTOR STATE_CHANGE SGK1 -RIMS1 IN_SAME_COMPONENT RAB3GAP2 -RIMS1 IN_SAME_COMPONENT UNC13B -RIMS1 REACTS_WITH RAB3GAP2 -RIMS1 REACTS_WITH RIMS1 -RIMS1 REACTS_WITH UNC13B -RIMS1 STATE_CHANGE STX1A -RIMS1 STATE_CHANGE VAMP2 -RIN1 REACTS_WITH RIN1 -RIN1 STATE_CHANGE RAB5A -RIN2 STATE_CHANGE RAB5A -RIPK1 CO_CONTROL CTSD -RIPK1 CO_CONTROL NSMAF -RIPK1 CO_CONTROL TNF -RIPK1 CO_CONTROL TNFRSF1A -RIPK1 IN_SAME_COMPONENT BIRC2 -RIPK1 IN_SAME_COMPONENT BIRC3 -RIPK1 IN_SAME_COMPONENT CASP2 -RIPK1 IN_SAME_COMPONENT CRADD -RIPK1 IN_SAME_COMPONENT FADD -RIPK1 IN_SAME_COMPONENT FAS -RIPK1 IN_SAME_COMPONENT FASLG -RIPK1 IN_SAME_COMPONENT LRDD -RIPK1 IN_SAME_COMPONENT MADD -RIPK1 IN_SAME_COMPONENT MAP3K3 -RIPK1 IN_SAME_COMPONENT MAP3K5 -RIPK1 IN_SAME_COMPONENT MAP3K7 -RIPK1 IN_SAME_COMPONENT SQSTM1 -RIPK1 IN_SAME_COMPONENT TNF -RIPK1 IN_SAME_COMPONENT TNFRSF10A -RIPK1 IN_SAME_COMPONENT TNFRSF10B -RIPK1 IN_SAME_COMPONENT TNFRSF1A -RIPK1 IN_SAME_COMPONENT TNFSF10 -RIPK1 IN_SAME_COMPONENT TRADD -RIPK1 IN_SAME_COMPONENT TRAF1 -RIPK1 IN_SAME_COMPONENT TRAF2 -RIPK1 REACTS_WITH BAG4 -RIPK1 REACTS_WITH BIRC2 -RIPK1 REACTS_WITH BIRC3 -RIPK1 REACTS_WITH CASP2 -RIPK1 REACTS_WITH CRADD -RIPK1 REACTS_WITH FADD -RIPK1 REACTS_WITH FAS -RIPK1 REACTS_WITH FASLG -RIPK1 REACTS_WITH MADD -RIPK1 REACTS_WITH MAP3K3 -RIPK1 REACTS_WITH MAP3K5 -RIPK1 REACTS_WITH MAP3K7 -RIPK1 REACTS_WITH RIPK1 -RIPK1 REACTS_WITH SQSTM1 -RIPK1 REACTS_WITH STAT1 -RIPK1 REACTS_WITH TNF -RIPK1 REACTS_WITH TNFRSF10A -RIPK1 REACTS_WITH TNFRSF10B -RIPK1 REACTS_WITH TNFRSF1A -RIPK1 REACTS_WITH TNFRSF1B -RIPK1 REACTS_WITH TNFSF10 -RIPK1 REACTS_WITH TRADD -RIPK1 REACTS_WITH TRAF1 -RIPK1 REACTS_WITH TRAF2 -RIPK1 STATE_CHANGE BID -RIPK1 STATE_CHANGE CASP2 -RIPK1 STATE_CHANGE CASP8 -RIPK1 STATE_CHANGE FADD -RIPK1 STATE_CHANGE MAP2K3 -RIPK1 STATE_CHANGE MAP2K7 -RIPK1 STATE_CHANGE MAP3K1 -RIPK1 STATE_CHANGE MAP3K14 -RIPK1 STATE_CHANGE MAP4K4 -RIPK1 STATE_CHANGE MAPK14 -RIPK1 STATE_CHANGE NFKB1 -RIPK1 STATE_CHANGE RELA -RIPK1 STATE_CHANGE SMPD1 -RIPK1 STATE_CHANGE SMPD3 -RIPK2 IN_SAME_COMPONENT IRAK1 -RIPK2 IN_SAME_COMPONENT NGF -RIPK2 IN_SAME_COMPONENT NGFR -RIPK2 IN_SAME_COMPONENT NOD2 -RIPK2 IN_SAME_COMPONENT SQSTM1 -RIPK2 IN_SAME_COMPONENT TRAF6 -RIPK2 REACTS_WITH BEX1 -RIPK2 REACTS_WITH IKBKG -RIPK2 REACTS_WITH IRAK1 -RIPK2 REACTS_WITH NGF -RIPK2 REACTS_WITH NGFR -RIPK2 REACTS_WITH RIPK2 -RIPK2 REACTS_WITH SQSTM1 -RIPK2 REACTS_WITH TNFAIP3 -RIPK2 REACTS_WITH TRAF6 -RIPK2 STATE_CHANGE IKBKG -RIPK2 STATE_CHANGE STAT4 -RIT1 REACTS_WITH RIT1 -RIT2 REACTS_WITH RIT2 -RNF111 IN_SAME_COMPONENT AXIN1 -RNF111 IN_SAME_COMPONENT SMAD7 -RNF111 REACTS_WITH AXIN1 -RNF111 REACTS_WITH RNF111 -RNF111 REACTS_WITH SMAD7 -RNF128 CO_CONTROL FOS -RNF128 CO_CONTROL JUN -RNF128 METABOLIC_CATALYSIS IL2 -RNF128 METABOLIC_CATALYSIS IL4 -RNF41 STATE_CHANGE ERBB2 -RNF41 STATE_CHANGE ERBB3 -RNF8 IN_SAME_COMPONENT ATM -RNF8 IN_SAME_COMPONENT BRCA1 -RNF8 IN_SAME_COMPONENT FAM175A -RNF8 IN_SAME_COMPONENT H2AFX -RNF8 IN_SAME_COMPONENT MDC1 -RNF8 IN_SAME_COMPONENT MRE11A -RNF8 IN_SAME_COMPONENT NBN -RNF8 IN_SAME_COMPONENT RAD50 -RNF8 IN_SAME_COMPONENT TP53BP1 -RNF8 IN_SAME_COMPONENT UIMC1 -RNF8 METABOLIC_CATALYSIS SMC3 -RNF8 REACTS_WITH ATM -RNF8 REACTS_WITH BRCA1 -RNF8 REACTS_WITH CTBP1 -RNF8 REACTS_WITH FAM175A -RNF8 REACTS_WITH H2AFX -RNF8 REACTS_WITH MDC1 -RNF8 REACTS_WITH MRE11A -RNF8 REACTS_WITH NBN -RNF8 REACTS_WITH RAD50 -RNF8 REACTS_WITH RBBP8 -RNF8 REACTS_WITH RNF8 -RNF8 REACTS_WITH TP53BP1 -RNF8 REACTS_WITH UIMC1 -RNF8 STATE_CHANGE CHEK2 -RNF8 STATE_CHANGE DCLRE1C -RNF8 STATE_CHANGE SMC1A -RNF8 STATE_CHANGE TRIM28 -ROBO1 IN_SAME_COMPONENT ABL1 -ROBO1 IN_SAME_COMPONENT CABLES1 -ROBO1 IN_SAME_COMPONENT SLIT1 -ROBO1 STATE_CHANGE CDH2 -ROBO1 STATE_CHANGE CTNNA1 -ROBO1 STATE_CHANGE CTNNB1 -ROBO1 STATE_CHANGE CTNND1 -ROCK1 IN_SAME_COMPONENT HSP90AA1 -ROCK1 IN_SAME_COMPONENT ITGAV -ROCK1 IN_SAME_COMPONENT ITGB3 -ROCK1 IN_SAME_COMPONENT KDR -ROCK1 IN_SAME_COMPONENT RHOA -ROCK1 IN_SAME_COMPONENT VEGFA -ROCK1 INTERACTS_WITH MYH2 -ROCK1 REACTS_WITH HSP90AA1 -ROCK1 REACTS_WITH ITGAV -ROCK1 REACTS_WITH ITGB3 -ROCK1 REACTS_WITH KDR -ROCK1 REACTS_WITH MYH2 -ROCK1 REACTS_WITH RHOA -ROCK1 REACTS_WITH ROCK1 -ROCK1 REACTS_WITH VEGFA -ROCK1 STATE_CHANGE ENAH -ROCK1 STATE_CHANGE MYL2 -ROCK2 IN_SAME_COMPONENT CD44 -ROCK2 REACTS_WITH CD44 -ROCK2 REACTS_WITH ROCK2 -ROCK2 STATE_CHANGE MSN -ROR2 CO_CONTROL PRKCZ -ROR2 IN_SAME_COMPONENT CTHRC1 -ROR2 IN_SAME_COMPONENT DVL2 -ROR2 IN_SAME_COMPONENT FLNA -ROR2 IN_SAME_COMPONENT FZD2 -ROR2 IN_SAME_COMPONENT FZD7 -ROR2 IN_SAME_COMPONENT WNT5A -ROR2 REACTS_WITH CTHRC1 -ROR2 REACTS_WITH DVL2 -ROR2 REACTS_WITH FLNA -ROR2 REACTS_WITH FZD2 -ROR2 REACTS_WITH FZD4 -ROR2 REACTS_WITH LRP5 -ROR2 REACTS_WITH ROR2 -ROR2 REACTS_WITH WNT5A -ROR2 STATE_CHANGE RAC1 -RPA1 IN_SAME_COMPONENT ATR -RPA1 IN_SAME_COMPONENT ATRIP -RPA1 IN_SAME_COMPONENT CDC6 -RPA1 IN_SAME_COMPONENT CEP164 -RPA1 IN_SAME_COMPONENT CHEK1 -RPA1 IN_SAME_COMPONENT CLSPN -RPA1 IN_SAME_COMPONENT HUS1 -RPA1 IN_SAME_COMPONENT RAD1 -RPA1 IN_SAME_COMPONENT RAD17 -RPA1 IN_SAME_COMPONENT RAD9A -RPA1 IN_SAME_COMPONENT RFC2 -RPA1 IN_SAME_COMPONENT RFC3 -RPA1 IN_SAME_COMPONENT RFC4 -RPA1 IN_SAME_COMPONENT RFC5 -RPA1 IN_SAME_COMPONENT RPA2 -RPA1 IN_SAME_COMPONENT SMARCAL1 -RPA1 IN_SAME_COMPONENT TIMELESS -RPA1 IN_SAME_COMPONENT TIPIN -RPA1 IN_SAME_COMPONENT TOPBP1 -RPA1 REACTS_WITH ATR -RPA1 REACTS_WITH ATRIP -RPA1 REACTS_WITH CDC6 -RPA1 REACTS_WITH CEP164 -RPA1 REACTS_WITH CHEK1 -RPA1 REACTS_WITH CLSPN -RPA1 REACTS_WITH HUS1 -RPA1 REACTS_WITH RAD1 -RPA1 REACTS_WITH RAD17 -RPA1 REACTS_WITH RAD9A -RPA1 REACTS_WITH RFC2 -RPA1 REACTS_WITH RFC3 -RPA1 REACTS_WITH RFC4 -RPA1 REACTS_WITH RFC5 -RPA1 REACTS_WITH RPA1 -RPA1 REACTS_WITH RPA2 -RPA1 REACTS_WITH SMARCAL1 -RPA1 REACTS_WITH TIMELESS -RPA1 REACTS_WITH TIPIN -RPA1 REACTS_WITH TOPBP1 -RPA1 STATE_CHANGE FANCD2 -RPA1 STATE_CHANGE MCM2 -RPA1 STATE_CHANGE MDM2 -RPA1 STATE_CHANGE NBN -RPA2 IN_SAME_COMPONENT ATR -RPA2 IN_SAME_COMPONENT ATRIP -RPA2 IN_SAME_COMPONENT CDC6 -RPA2 IN_SAME_COMPONENT CEP164 -RPA2 IN_SAME_COMPONENT CHEK1 -RPA2 IN_SAME_COMPONENT CLSPN -RPA2 IN_SAME_COMPONENT HUS1 -RPA2 IN_SAME_COMPONENT RAD1 -RPA2 IN_SAME_COMPONENT RAD17 -RPA2 IN_SAME_COMPONENT RAD9A -RPA2 IN_SAME_COMPONENT RFC2 -RPA2 IN_SAME_COMPONENT RFC3 -RPA2 IN_SAME_COMPONENT RFC4 -RPA2 IN_SAME_COMPONENT RFC5 -RPA2 IN_SAME_COMPONENT RPA1 -RPA2 IN_SAME_COMPONENT SMARCAL1 -RPA2 IN_SAME_COMPONENT TIMELESS -RPA2 IN_SAME_COMPONENT TIPIN -RPA2 IN_SAME_COMPONENT TOPBP1 -RPA2 REACTS_WITH ATR -RPA2 REACTS_WITH ATRIP -RPA2 REACTS_WITH CDC6 -RPA2 REACTS_WITH CEP164 -RPA2 REACTS_WITH CHEK1 -RPA2 REACTS_WITH CLSPN -RPA2 REACTS_WITH HUS1 -RPA2 REACTS_WITH RAD1 -RPA2 REACTS_WITH RAD17 -RPA2 REACTS_WITH RAD9A -RPA2 REACTS_WITH RFC2 -RPA2 REACTS_WITH RFC3 -RPA2 REACTS_WITH RFC4 -RPA2 REACTS_WITH RFC5 -RPA2 REACTS_WITH RPA1 -RPA2 REACTS_WITH RPA2 -RPA2 REACTS_WITH SMARCAL1 -RPA2 REACTS_WITH TIMELESS -RPA2 REACTS_WITH TIPIN -RPA2 REACTS_WITH TOPBP1 -RPA2 STATE_CHANGE FANCD2 -RPA2 STATE_CHANGE MCM2 -RPA2 STATE_CHANGE MDM2 -RPA2 STATE_CHANGE NBN -RPL5 IN_SAME_COMPONENT MDM2 -RPL5 REACTS_WITH MDM2 -RPL5 REACTS_WITH RPL5 -RPS6KA1 STATE_CHANGE CREB1 -RPS6KA1 STATE_CHANGE TSC1 -RPS6KA1 STATE_CHANGE TSC2 -RPS6KA3 CO_CONTROL AR -RPS6KA3 METABOLIC_CATALYSIS KLK3 -RPS6KA3 STATE_CHANGE CREB1 -RPS6KA3 STATE_CHANGE PDPK1 -RPS6KA3 STATE_CHANGE SRF -RPS6KA5 CO_CONTROL PRKACA -RPS6KA5 STATE_CHANGE CREB1 -RPS6KB1 CO_CONTROL MLST8 -RPS6KB1 CO_CONTROL MTOR -RPS6KB1 CO_CONTROL RPTOR -RPS6KB1 IN_SAME_COMPONENT AKT1 -RPS6KB1 IN_SAME_COMPONENT DKC1 -RPS6KB1 IN_SAME_COMPONENT HSP90AA1 -RPS6KB1 IN_SAME_COMPONENT MTOR -RPS6KB1 IN_SAME_COMPONENT POLDIP3 -RPS6KB1 IN_SAME_COMPONENT PTGES3 -RPS6KB1 IN_SAME_COMPONENT TERT -RPS6KB1 METABOLIC_CATALYSIS TGFB1 -RPS6KB1 REACTS_WITH AKT1 -RPS6KB1 REACTS_WITH DKC1 -RPS6KB1 REACTS_WITH HSP90AA1 -RPS6KB1 REACTS_WITH MITF -RPS6KB1 REACTS_WITH MTOR -RPS6KB1 REACTS_WITH POLDIP3 -RPS6KB1 REACTS_WITH PTGES3 -RPS6KB1 REACTS_WITH RPS6KB1 -RPS6KB1 REACTS_WITH TERT -RPS6KB1 STATE_CHANGE BCAR1 -RPS6KB1 STATE_CHANGE CRK -RPS6KB1 STATE_CHANGE E2F1 -RPS6KB1 STATE_CHANGE EEF2K -RPS6KB1 STATE_CHANGE EIF3A -RPS6KB1 STATE_CHANGE EIF4A1 -RPS6KB1 STATE_CHANGE EIF4B -RPS6KB1 STATE_CHANGE IRS1 -RPS6KB1 STATE_CHANGE PDCD4 -RPS6KB1 STATE_CHANGE PXN -RPTOR CO_CONTROL CCNE1 -RPTOR CO_CONTROL CDK2 -RPTOR CO_CONTROL RPS6KB1 -RPTOR IN_SAME_COMPONENT AKT1S1 -RPTOR IN_SAME_COMPONENT ATG13 -RPTOR IN_SAME_COMPONENT DEPTOR -RPTOR IN_SAME_COMPONENT MLST8 -RPTOR IN_SAME_COMPONENT MTOR -RPTOR IN_SAME_COMPONENT PPARGC1A -RPTOR IN_SAME_COMPONENT RB1CC1 -RPTOR IN_SAME_COMPONENT YY1 -RPTOR METABOLIC_CATALYSIS CYCS -RPTOR METABOLIC_CATALYSIS PPARGC1A -RPTOR REACTS_WITH AKT1S1 -RPTOR REACTS_WITH ATG13 -RPTOR REACTS_WITH DEPTOR -RPTOR REACTS_WITH MLST8 -RPTOR REACTS_WITH MTOR -RPTOR REACTS_WITH PPARGC1A -RPTOR REACTS_WITH RB1CC1 -RPTOR REACTS_WITH RPTOR -RPTOR REACTS_WITH YY1 -RPTOR STATE_CHANGE CLIP1 -RPTOR STATE_CHANGE EIF4E -RPTOR STATE_CHANGE EIF4EBP1 -RPTOR STATE_CHANGE IRS1 -RPTOR STATE_CHANGE RPS6KB1 -RPTOR STATE_CHANGE RRN3 -RPTOR STATE_CHANGE SREBF1 -RRAS REACTS_WITH RRAS -RRAS STATE_CHANGE RAF1 -RSPO1 STATE_CHANGE DKK1 -RSPO1 STATE_CHANGE LRP6 -RTN4R IN_SAME_COMPONENT ARHGDIA -RTN4R IN_SAME_COMPONENT LINGO1 -RTN4R IN_SAME_COMPONENT NGFR -RTN4R REACTS_WITH ARHGDIA -RTN4R REACTS_WITH LINGO1 -RTN4R REACTS_WITH NGFR -RTN4R REACTS_WITH RHOA -RTN4R REACTS_WITH RTN4R -RUNX2 IN_SAME_COMPONENT HES1 -RUNX2 IN_SAME_COMPONENT HEY2 -RUNX2 IN_SAME_COMPONENT RB1 -RUNX2 IN_SAME_COMPONENT SMAD4 -RUNX2 METABOLIC_CATALYSIS BGLAP -RUNX2 REACTS_WITH HES1 -RUNX2 REACTS_WITH HEY2 -RUNX2 REACTS_WITH RB1 -RUNX2 REACTS_WITH RUNX2 -RUNX2 REACTS_WITH SMAD4 -RUVBL1 CO_CONTROL MAX -RUVBL1 CO_CONTROL MYC -RUVBL1 IN_SAME_COMPONENT ACTL6A -RUVBL1 IN_SAME_COMPONENT KAT5 -RUVBL1 IN_SAME_COMPONENT MAX -RUVBL1 IN_SAME_COMPONENT MYC -RUVBL1 IN_SAME_COMPONENT RUVBL2 -RUVBL1 IN_SAME_COMPONENT TRRAP -RUVBL1 METABOLIC_CATALYSIS CAD -RUVBL1 METABOLIC_CATALYSIS GPAM -RUVBL1 METABOLIC_CATALYSIS HSPD1 -RUVBL1 METABOLIC_CATALYSIS NCL -RUVBL1 METABOLIC_CATALYSIS NME1 -RUVBL1 METABOLIC_CATALYSIS PTMA -RUVBL1 REACTS_WITH ACTL6A -RUVBL1 REACTS_WITH KAT5 -RUVBL1 REACTS_WITH MAX -RUVBL1 REACTS_WITH MYC -RUVBL1 REACTS_WITH RUVBL1 -RUVBL1 REACTS_WITH RUVBL2 -RUVBL1 REACTS_WITH TRRAP -RUVBL2 CO_CONTROL MAX -RUVBL2 CO_CONTROL MYC -RUVBL2 IN_SAME_COMPONENT ACTL6A -RUVBL2 IN_SAME_COMPONENT ATF2 -RUVBL2 IN_SAME_COMPONENT CTNNB1 -RUVBL2 IN_SAME_COMPONENT KAT5 -RUVBL2 IN_SAME_COMPONENT MAX -RUVBL2 IN_SAME_COMPONENT MYC -RUVBL2 IN_SAME_COMPONENT RUVBL1 -RUVBL2 IN_SAME_COMPONENT TCF7L2 -RUVBL2 IN_SAME_COMPONENT TRRAP -RUVBL2 METABOLIC_CATALYSIS CAD -RUVBL2 METABOLIC_CATALYSIS GPAM -RUVBL2 METABOLIC_CATALYSIS HSPD1 -RUVBL2 METABOLIC_CATALYSIS NCL -RUVBL2 METABOLIC_CATALYSIS NME1 -RUVBL2 METABOLIC_CATALYSIS PTMA -RUVBL2 REACTS_WITH ACTL6A -RUVBL2 REACTS_WITH ATF2 -RUVBL2 REACTS_WITH CTNNB1 -RUVBL2 REACTS_WITH KAT5 -RUVBL2 REACTS_WITH MAX -RUVBL2 REACTS_WITH MYC -RUVBL2 REACTS_WITH RUVBL1 -RUVBL2 REACTS_WITH RUVBL2 -RUVBL2 REACTS_WITH TCF7L2 -RUVBL2 REACTS_WITH TRRAP -RXRA IN_SAME_COMPONENT CCNH -RXRA IN_SAME_COMPONENT FAM120B -RXRA IN_SAME_COMPONENT RARA -RXRA REACTS_WITH CCNH -RXRA REACTS_WITH FAM120B -RXRA REACTS_WITH RARA -RXRA REACTS_WITH RXRA -RYBP CO_CONTROL E2F7 -RYBP IN_SAME_COMPONENT E2F2 -RYBP IN_SAME_COMPONENT E2F3 -RYBP IN_SAME_COMPONENT YY1 -RYBP METABOLIC_CATALYSIS CDC6 -RYBP REACTS_WITH E2F3 -RYBP REACTS_WITH RYBP -RYBP REACTS_WITH YY1 -RYK IN_SAME_COMPONENT FZD8 -RYK IN_SAME_COMPONENT WNT1 -RYK REACTS_WITH FZD8 -RYK REACTS_WITH RYK -RYK REACTS_WITH WNT1 -S100A8 IN_SAME_COMPONENT LY96 -S100A8 IN_SAME_COMPONENT MYD88 -S100A8 IN_SAME_COMPONENT S100A9 -S100A8 IN_SAME_COMPONENT TIRAP -S100A8 IN_SAME_COMPONENT TLR4 -S100A8 REACTS_WITH LY96 -S100A8 REACTS_WITH MYD88 -S100A8 REACTS_WITH S100A8 -S100A8 REACTS_WITH S100A9 -S100A8 REACTS_WITH TIRAP -S100A8 REACTS_WITH TLR4 -S100A8 STATE_CHANGE IRAK1 -S100A9 IN_SAME_COMPONENT LY96 -S100A9 IN_SAME_COMPONENT MYD88 -S100A9 IN_SAME_COMPONENT S100A8 -S100A9 IN_SAME_COMPONENT TIRAP -S100A9 IN_SAME_COMPONENT TLR4 -S100A9 REACTS_WITH LY96 -S100A9 REACTS_WITH MYD88 -S100A9 REACTS_WITH S100A8 -S100A9 REACTS_WITH S100A9 -S100A9 REACTS_WITH TIRAP -S100A9 REACTS_WITH TLR4 -S100A9 STATE_CHANGE IRAK1 -S1PR1 IN_SAME_COMPONENT PDGFB -S1PR1 IN_SAME_COMPONENT PDGFRB -S1PR1 INTERACTS_WITH S1PR2 -S1PR1 INTERACTS_WITH S1PR3 -S1PR1 REACTS_WITH PDGFB -S1PR1 REACTS_WITH PDGFRB -S1PR1 REACTS_WITH S1PR1 -S1PR1 STATE_CHANGE PLCB2 -S1PR1 STATE_CHANGE PLCG1 -S1PR1 STATE_CHANGE RAC1 -S1PR1 STATE_CHANGE RHOA -S1PR2 CO_CONTROL RHOA -S1PR2 IN_SAME_COMPONENT GNA12 -S1PR2 IN_SAME_COMPONENT GNA13 -S1PR2 INTERACTS_WITH S1PR1 -S1PR2 INTERACTS_WITH S1PR3 -S1PR2 REACTS_WITH GNA12 -S1PR2 REACTS_WITH GNA13 -S1PR2 REACTS_WITH S1PR2 -S1PR2 STATE_CHANGE MAPK14 -S1PR2 STATE_CHANGE MAPK8 -S1PR2 STATE_CHANGE RHOA -S1PR3 CO_CONTROL FLT1 -S1PR3 CO_CONTROL PDGFB -S1PR3 CO_CONTROL PDGFRB -S1PR3 CO_CONTROL VEGFA -S1PR3 IN_SAME_COMPONENT GNA12 -S1PR3 IN_SAME_COMPONENT GNA13 -S1PR3 INTERACTS_WITH S1PR1 -S1PR3 INTERACTS_WITH S1PR2 -S1PR3 METABOLIC_CATALYSIS AKT3 -S1PR3 REACTS_WITH GNA12 -S1PR3 REACTS_WITH GNA13 -S1PR3 REACTS_WITH S1PR3 -S1PR3 STATE_CHANGE AKT1 -S1PR3 STATE_CHANGE CXCR4 -S1PR3 STATE_CHANGE RAC1 -S1PR3 STATE_CHANGE RHOA -S1PR3 STATE_CHANGE SRC -S1PR4 IN_SAME_COMPONENT GNA12 -S1PR4 IN_SAME_COMPONENT GNA13 -S1PR4 REACTS_WITH GNA12 -S1PR4 REACTS_WITH GNA13 -S1PR4 REACTS_WITH S1PR4 -S1PR4 STATE_CHANGE CDC42 -S1PR4 STATE_CHANGE PLCG1 -S1PR4 STATE_CHANGE RHOA -S1PR5 IN_SAME_COMPONENT GNA12 -S1PR5 REACTS_WITH GNA12 -S1PR5 REACTS_WITH S1PR5 -S1PR5 STATE_CHANGE RHOA -SAA1 IN_SAME_COMPONENT TLR1 -SAA1 IN_SAME_COMPONENT TLR2 -SAA1 REACTS_WITH SAA1 -SAA1 REACTS_WITH TLR1 -SAA1 REACTS_WITH TLR2 -SAG IN_SAME_COMPONENT RHO -SAG REACTS_WITH RHO -SAG REACTS_WITH SAG -SAP18 CO_CONTROL ARRB2 -SAP18 CO_CONTROL CITED1 -SAP18 CO_CONTROL SMO -SAP18 IN_SAME_COMPONENT CTBP1 -SAP18 IN_SAME_COMPONENT HDAC1 -SAP18 IN_SAME_COMPONENT HDAC2 -SAP18 IN_SAME_COMPONENT MAX -SAP18 IN_SAME_COMPONENT MXD1 -SAP18 IN_SAME_COMPONENT NCOR1 -SAP18 IN_SAME_COMPONENT RBBP4 -SAP18 IN_SAME_COMPONENT RBBP7 -SAP18 IN_SAME_COMPONENT SAP30 -SAP18 IN_SAME_COMPONENT SIN3A -SAP18 IN_SAME_COMPONENT SIN3B -SAP18 IN_SAME_COMPONENT SKI -SAP18 IN_SAME_COMPONENT SKIL -SAP18 IN_SAME_COMPONENT SMAD2 -SAP18 IN_SAME_COMPONENT SMAD4 -SAP18 IN_SAME_COMPONENT SUFU -SAP18 IN_SAME_COMPONENT TGIF1 -SAP18 IN_SAME_COMPONENT UBE3A -SAP18 METABOLIC_CATALYSIS TERT -SAP18 REACTS_WITH HDAC1 -SAP18 REACTS_WITH HDAC2 -SAP18 REACTS_WITH MAX -SAP18 REACTS_WITH MXD1 -SAP18 REACTS_WITH NCOR1 -SAP18 REACTS_WITH RBBP4 -SAP18 REACTS_WITH RBBP7 -SAP18 REACTS_WITH SAP18 -SAP18 REACTS_WITH SAP30 -SAP18 REACTS_WITH SIN3A -SAP18 REACTS_WITH SIN3B -SAP18 REACTS_WITH SKIL -SAP18 REACTS_WITH SMAD2 -SAP18 REACTS_WITH SMAD4 -SAP18 REACTS_WITH SUFU -SAP18 REACTS_WITH UBE3A -SAP18 STATE_CHANGE GLI1 -SAP18 STATE_CHANGE GLI3 -SAP18 STATE_CHANGE SMAD2 -SAP18 STATE_CHANGE SMAD4 -SAP30 CO_CONTROL ARRB2 -SAP30 CO_CONTROL CITED1 -SAP30 CO_CONTROL SMO -SAP30 IN_SAME_COMPONENT CTBP1 -SAP30 IN_SAME_COMPONENT HDAC1 -SAP30 IN_SAME_COMPONENT HDAC2 -SAP30 IN_SAME_COMPONENT MAX -SAP30 IN_SAME_COMPONENT MXD1 -SAP30 IN_SAME_COMPONENT NCOR1 -SAP30 IN_SAME_COMPONENT RBBP4 -SAP30 IN_SAME_COMPONENT RBBP7 -SAP30 IN_SAME_COMPONENT SAP18 -SAP30 IN_SAME_COMPONENT SIN3A -SAP30 IN_SAME_COMPONENT SIN3B -SAP30 IN_SAME_COMPONENT SKI -SAP30 IN_SAME_COMPONENT SKIL -SAP30 IN_SAME_COMPONENT SMAD2 -SAP30 IN_SAME_COMPONENT SMAD4 -SAP30 IN_SAME_COMPONENT SUFU -SAP30 IN_SAME_COMPONENT TGIF1 -SAP30 IN_SAME_COMPONENT UBE3A -SAP30 IN_SAME_COMPONENT YY1 -SAP30 METABOLIC_CATALYSIS TERT -SAP30 REACTS_WITH HDAC1 -SAP30 REACTS_WITH HDAC2 -SAP30 REACTS_WITH MAX -SAP30 REACTS_WITH MXD1 -SAP30 REACTS_WITH NCOR1 -SAP30 REACTS_WITH RBBP4 -SAP30 REACTS_WITH RBBP7 -SAP30 REACTS_WITH SAP18 -SAP30 REACTS_WITH SAP30 -SAP30 REACTS_WITH SIN3A -SAP30 REACTS_WITH SIN3B -SAP30 REACTS_WITH SKIL -SAP30 REACTS_WITH SMAD2 -SAP30 REACTS_WITH SMAD4 -SAP30 REACTS_WITH SUFU -SAP30 REACTS_WITH UBE3A -SAP30 REACTS_WITH YY1 -SAP30 STATE_CHANGE GLI1 -SAP30 STATE_CHANGE GLI3 -SAP30 STATE_CHANGE SMAD2 -SAP30 STATE_CHANGE SMAD4 -SAT1 IN_SAME_COMPONENT ITGA9 -SAT1 IN_SAME_COMPONENT ITGB1 -SAT1 IN_SAME_COMPONENT TNC -SAT1 REACTS_WITH ITGA9 -SAT1 REACTS_WITH ITGB1 -SAT1 REACTS_WITH SAT1 -SAT1 REACTS_WITH TNC -SCAI IN_SAME_COMPONENT SRF -SCAI METABOLIC_CATALYSIS ITGB1 -SCAI REACTS_WITH SCAI -SCAI REACTS_WITH SRF -SDC1 IN_SAME_COMPONENT BSG -SDC1 IN_SAME_COMPONENT CASK -SDC1 IN_SAME_COMPONENT CCL5 -SDC1 IN_SAME_COMPONENT HGF -SDC1 IN_SAME_COMPONENT ITGAV -SDC1 IN_SAME_COMPONENT ITGB3 -SDC1 IN_SAME_COMPONENT ITGB5 -SDC1 IN_SAME_COMPONENT LAMA5 -SDC1 IN_SAME_COMPONENT MET -SDC1 IN_SAME_COMPONENT SDCBP -SDC1 INTERACTS_WITH VCL -SDC1 REACTS_WITH BSG -SDC1 REACTS_WITH CASK -SDC1 REACTS_WITH CCL5 -SDC1 REACTS_WITH HGF -SDC1 REACTS_WITH ITGAV -SDC1 REACTS_WITH ITGB3 -SDC1 REACTS_WITH ITGB5 -SDC1 REACTS_WITH LAMA5 -SDC1 REACTS_WITH MET -SDC1 REACTS_WITH SDC1 -SDC1 REACTS_WITH SDC2 -SDC1 REACTS_WITH SDC3 -SDC1 REACTS_WITH SDC4 -SDC1 REACTS_WITH SDCBP -SDC2 CO_CONTROL IL17RD -SDC2 IN_SAME_COMPONENT CASK -SDC2 IN_SAME_COMPONENT CAV2 -SDC2 IN_SAME_COMPONENT CBL -SDC2 IN_SAME_COMPONENT CSF2 -SDC2 IN_SAME_COMPONENT EPB41 -SDC2 IN_SAME_COMPONENT EZR -SDC2 IN_SAME_COMPONENT FN1 -SDC2 IN_SAME_COMPONENT FRS2 -SDC2 IN_SAME_COMPONENT GAB1 -SDC2 IN_SAME_COMPONENT HRAS -SDC2 IN_SAME_COMPONENT IL8 -SDC2 IN_SAME_COMPONENT ITGA2 -SDC2 IN_SAME_COMPONENT ITGB1 -SDC2 IN_SAME_COMPONENT KNG1 -SDC2 IN_SAME_COMPONENT LAMA1 -SDC2 IN_SAME_COMPONENT LAMA3 -SDC2 IN_SAME_COMPONENT MMP2 -SDC2 IN_SAME_COMPONENT NF1 -SDC2 IN_SAME_COMPONENT PRKCD -SDC2 IN_SAME_COMPONENT PTPN11 -SDC2 IN_SAME_COMPONENT RASA1 -SDC2 IN_SAME_COMPONENT SDCBP -SDC2 IN_SAME_COMPONENT SHC1 -SDC2 IN_SAME_COMPONENT SOS1 -SDC2 IN_SAME_COMPONENT SPRY2 -SDC2 IN_SAME_COMPONENT SRC -SDC2 IN_SAME_COMPONENT TGFB1 -SDC2 IN_SAME_COMPONENT TNFRSF13B -SDC2 IN_SAME_COMPONENT TRAPPC4 -SDC2 INTERACTS_WITH ITGA5 -SDC2 INTERACTS_WITH ITGB1 -SDC2 METABOLIC_CATALYSIS SPP1 -SDC2 REACTS_WITH CASK -SDC2 REACTS_WITH CAV2 -SDC2 REACTS_WITH CBL -SDC2 REACTS_WITH CSF2 -SDC2 REACTS_WITH EPB41 -SDC2 REACTS_WITH EZR -SDC2 REACTS_WITH FN1 -SDC2 REACTS_WITH FRS2 -SDC2 REACTS_WITH GAB1 -SDC2 REACTS_WITH HRAS -SDC2 REACTS_WITH IL8 -SDC2 REACTS_WITH ITGA2 -SDC2 REACTS_WITH ITGB1 -SDC2 REACTS_WITH KNG1 -SDC2 REACTS_WITH LAMA1 -SDC2 REACTS_WITH LAMA3 -SDC2 REACTS_WITH MMP2 -SDC2 REACTS_WITH NF1 -SDC2 REACTS_WITH PRKCD -SDC2 REACTS_WITH PTPN11 -SDC2 REACTS_WITH RASA1 -SDC2 REACTS_WITH SDC1 -SDC2 REACTS_WITH SDC2 -SDC2 REACTS_WITH SDC3 -SDC2 REACTS_WITH SDC4 -SDC2 REACTS_WITH SDCBP -SDC2 REACTS_WITH SHC1 -SDC2 REACTS_WITH SOS1 -SDC2 REACTS_WITH SPRY2 -SDC2 REACTS_WITH SRC -SDC2 REACTS_WITH TGFB1 -SDC2 REACTS_WITH TNFRSF13B -SDC2 REACTS_WITH TRAPPC4 -SDC2 STATE_CHANGE CASP3 -SDC2 STATE_CHANGE MAPK8 -SDC2 STATE_CHANGE PIK3CA -SDC2 STATE_CHANGE PIK3R1 -SDC2 STATE_CHANGE PLCG1 -SDC2 STATE_CHANGE PRKACA -SDC2 STATE_CHANGE RASA1 -SDC2 STATE_CHANGE SDC2 -SDC2 STATE_CHANGE SRC -SDC2 STATE_CHANGE STAT1 -SDC3 IN_SAME_COMPONENT AGRP -SDC3 IN_SAME_COMPONENT CASK -SDC3 IN_SAME_COMPONENT CTTN -SDC3 IN_SAME_COMPONENT EGFR -SDC3 IN_SAME_COMPONENT FYN -SDC3 IN_SAME_COMPONENT IL8 -SDC3 IN_SAME_COMPONENT MC4R -SDC3 IN_SAME_COMPONENT NCAN -SDC3 IN_SAME_COMPONENT SRC -SDC3 REACTS_WITH AGRP -SDC3 REACTS_WITH CASK -SDC3 REACTS_WITH CTTN -SDC3 REACTS_WITH EGFR -SDC3 REACTS_WITH FYN -SDC3 REACTS_WITH IL8 -SDC3 REACTS_WITH MC4R -SDC3 REACTS_WITH NCAN -SDC3 REACTS_WITH POMC -SDC3 REACTS_WITH SDC1 -SDC3 REACTS_WITH SDC2 -SDC3 REACTS_WITH SDC3 -SDC3 REACTS_WITH SDC4 -SDC3 REACTS_WITH SRC -SDC4 CO_CONTROL FN1 -SDC4 CO_CONTROL ITGA5 -SDC4 CO_CONTROL ITGB1 -SDC4 CO_CONTROL PRKCA -SDC4 CO_CONTROL RHOA -SDC4 IN_SAME_COMPONENT ACTN1 -SDC4 IN_SAME_COMPONENT ADAM12 -SDC4 IN_SAME_COMPONENT CCL5 -SDC4 IN_SAME_COMPONENT CXCL12 -SDC4 IN_SAME_COMPONENT CXCR4 -SDC4 IN_SAME_COMPONENT DNM2 -SDC4 IN_SAME_COMPONENT FGF2 -SDC4 IN_SAME_COMPONENT FGFR1 -SDC4 IN_SAME_COMPONENT FZD7 -SDC4 IN_SAME_COMPONENT GIPC1 -SDC4 IN_SAME_COMPONENT ITGAV -SDC4 IN_SAME_COMPONENT ITGB3 -SDC4 IN_SAME_COMPONENT LAMA1 -SDC4 IN_SAME_COMPONENT LAMA3 -SDC4 IN_SAME_COMPONENT MDK -SDC4 IN_SAME_COMPONENT NUDT16L1 -SDC4 IN_SAME_COMPONENT PRKCA -SDC4 IN_SAME_COMPONENT SDCBP -SDC4 IN_SAME_COMPONENT TFPI -SDC4 IN_SAME_COMPONENT THBS1 -SDC4 IN_SAME_COMPONENT THY1 -SDC4 IN_SAME_COMPONENT TNC -SDC4 IN_SAME_COMPONENT TNFRSF13B -SDC4 INTERACTS_WITH PRKCA -SDC4 INTERACTS_WITH RHOA -SDC4 REACTS_WITH ACTN1 -SDC4 REACTS_WITH ADAM12 -SDC4 REACTS_WITH CCL5 -SDC4 REACTS_WITH CXCL12 -SDC4 REACTS_WITH CXCR4 -SDC4 REACTS_WITH DNM2 -SDC4 REACTS_WITH FGF2 -SDC4 REACTS_WITH FGFR1 -SDC4 REACTS_WITH FZD7 -SDC4 REACTS_WITH GIPC1 -SDC4 REACTS_WITH ITGAV -SDC4 REACTS_WITH ITGB3 -SDC4 REACTS_WITH LAMA1 -SDC4 REACTS_WITH LAMA3 -SDC4 REACTS_WITH MDK -SDC4 REACTS_WITH NUDT16L1 -SDC4 REACTS_WITH PRKCA -SDC4 REACTS_WITH SDC1 -SDC4 REACTS_WITH SDC2 -SDC4 REACTS_WITH SDC3 -SDC4 REACTS_WITH SDC4 -SDC4 REACTS_WITH SDCBP -SDC4 REACTS_WITH TFPI -SDC4 REACTS_WITH THBS1 -SDC4 REACTS_WITH THY1 -SDC4 REACTS_WITH TNC -SDC4 REACTS_WITH TNFRSF13B -SDC4 STATE_CHANGE PRKCA -SDC4 STATE_CHANGE RAC1 -SDC4 STATE_CHANGE SDC4 -SDC4 STATE_CHANGE SDCBP -SDCBP IN_SAME_COMPONENT IL5 -SDCBP IN_SAME_COMPONENT IL5RA -SDCBP IN_SAME_COMPONENT SDC1 -SDCBP IN_SAME_COMPONENT SDC2 -SDCBP IN_SAME_COMPONENT SDC4 -SDCBP REACTS_WITH IL5 -SDCBP REACTS_WITH IL5RA -SDCBP REACTS_WITH SDC1 -SDCBP REACTS_WITH SDC2 -SDCBP REACTS_WITH SDC4 -SDCBP REACTS_WITH SDCBP -SELP IN_SAME_COMPONENT ITGAM -SELP IN_SAME_COMPONENT ITGB2 -SELP IN_SAME_COMPONENT SELPLG -SELPLG IN_SAME_COMPONENT ITGAM -SELPLG IN_SAME_COMPONENT ITGB2 -SELPLG IN_SAME_COMPONENT SELP -SELPLG REACTS_WITH ITGAM -SELPLG REACTS_WITH ITGB2 -SELPLG REACTS_WITH SELP -SELPLG REACTS_WITH SELPLG -SELP REACTS_WITH ITGAM -SELP REACTS_WITH ITGB2 -SELP REACTS_WITH SELP -SELP REACTS_WITH SELPLG -SENP1 STATE_CHANGE HDAC1 -SEPT1 IN_SAME_COMPONENT AURKB -SEPT1 REACTS_WITH AURKB -SEPT1 REACTS_WITH SEPT1 -SEPT2 IN_SAME_COMPONENT EXOC7 -SEPT2 IN_SAME_COMPONENT IQGAP1 -SEPT2 REACTS_WITH EXOC7 -SEPT2 REACTS_WITH IQGAP1 -SEPT2 REACTS_WITH SEPT2 -SERPINC1 IN_SAME_COMPONENT GPC1 -SERPINC1 REACTS_WITH GPC1 -SERPINC1 REACTS_WITH SERPINC1 -SERPINE1 IN_SAME_COMPONENT ITGAV -SERPINE1 IN_SAME_COMPONENT ITGB3 -SERPINE1 IN_SAME_COMPONENT ITGB5 -SERPINE1 IN_SAME_COMPONENT PLAU -SERPINE1 IN_SAME_COMPONENT PLAUR -SERPINE1 IN_SAME_COMPONENT VTN -SERPINE1 REACTS_WITH ITGAV -SERPINE1 REACTS_WITH ITGB3 -SERPINE1 REACTS_WITH ITGB5 -SERPINE1 REACTS_WITH PLAU -SERPINE1 REACTS_WITH PLAUR -SERPINE1 REACTS_WITH SERPINE1 -SERPINE1 REACTS_WITH VTN -SETD7 STATE_CHANGE TP53 -SETD8 STATE_CHANGE TP53 -SETDB1 IN_SAME_COMPONENT CHD7 -SETDB1 IN_SAME_COMPONENT NLK -SETDB1 IN_SAME_COMPONENT PPARG -SETDB1 REACTS_WITH CHD7 -SETDB1 REACTS_WITH NLK -SETDB1 REACTS_WITH PPARG -SETDB1 REACTS_WITH SETDB1 -SFN IN_SAME_COMPONENT FKBP5 -SFN IN_SAME_COMPONENT HSP90AA1 -SFN REACTS_WITH FKBP5 -SFN REACTS_WITH HSP90AA1 -SFN REACTS_WITH SFN -SGK1 STATE_CHANGE FOXO3 -SGMS1 CO_CONTROL SMPD1 -SGOL1 IN_SAME_COMPONENT AURKB -SGOL1 IN_SAME_COMPONENT BIRC5 -SGOL1 REACTS_WITH AURKB -SGOL1 REACTS_WITH BIRC5 -SGOL1 REACTS_WITH SGOL1 -SH2B1 CO_CONTROL MAGED1 -SH2B1 CO_CONTROL NGFR -SH2B1 STATE_CHANGE NGF -SH2B2 IN_SAME_COMPONENT CBL -SH2B2 IN_SAME_COMPONENT RAPGEF1 -SH2B2 IN_SAME_COMPONENT SORBS1 -SH2B2 REACTS_WITH CBL -SH2B2 REACTS_WITH RAPGEF1 -SH2B2 REACTS_WITH SH2B2 -SH2B2 REACTS_WITH SORBS1 -SH2B2 STATE_CHANGE RHOQ -SH2B3 STATE_CHANGE EPO -SH2B3 STATE_CHANGE EPOR -SH2B3 STATE_CHANGE JAK2 -SH2B3 STATE_CHANGE SOCS3 -SH2D2A IN_SAME_COMPONENT KDR -SH2D2A IN_SAME_COMPONENT MAP3K2 -SH2D2A IN_SAME_COMPONENT VEGFA -SH2D2A REACTS_WITH KDR -SH2D2A REACTS_WITH MAP3K2 -SH2D2A REACTS_WITH SH2D2A -SH2D2A REACTS_WITH VEGFA -SH3BP2 IN_SAME_COMPONENT CD247 -SH3BP2 IN_SAME_COMPONENT CD3D -SH3BP2 IN_SAME_COMPONENT CD3E -SH3BP2 IN_SAME_COMPONENT CD3G -SH3BP2 IN_SAME_COMPONENT CD4 -SH3BP2 IN_SAME_COMPONENT HLA-DRA -SH3BP2 IN_SAME_COMPONENT HLA-DRB1 -SH3BP2 IN_SAME_COMPONENT LCK -SH3BP2 IN_SAME_COMPONENT ZAP70 -SH3BP2 REACTS_WITH CD247 -SH3BP2 REACTS_WITH CD3D -SH3BP2 REACTS_WITH CD3E -SH3BP2 REACTS_WITH CD3G -SH3BP2 REACTS_WITH CD4 -SH3BP2 REACTS_WITH HLA-DRA -SH3BP2 REACTS_WITH HLA-DRB1 -SH3BP2 REACTS_WITH LCK -SH3BP2 REACTS_WITH SH3BP2 -SH3BP2 REACTS_WITH ZAP70 -SH3BP5 CO_CONTROL IBTK -SH3BP5 STATE_CHANGE BLNK -SH3BP5 STATE_CHANGE BTK -SH3BP5 STATE_CHANGE CD79A -SH3BP5 STATE_CHANGE CD79B -SH3BP5 STATE_CHANGE LYN -SH3BP5 STATE_CHANGE PLCG2 -SH3BP5 STATE_CHANGE SYK -SH3GL1 REACTS_WITH SH3GL1 -SH3GL2 CO_CONTROL AMPH -SH3GL2 CO_CONTROL DNM1 -SH3GL2 CO_CONTROL SYNJ1 -SH3GL2 IN_SAME_COMPONENT CBL -SH3GL2 IN_SAME_COMPONENT SH3KBP1 -SH3GL2 REACTS_WITH SH3GL2 -SH3GL2 REACTS_WITH SH3KBP1 -SH3GL2 STATE_CHANGE EGF -SH3GL2 STATE_CHANGE EGFR -SH3GL2 STATE_CHANGE HGF -SH3GL2 STATE_CHANGE MET -SH3KBP1 CO_CONTROL AMPH -SH3KBP1 CO_CONTROL DNM1 -SH3KBP1 CO_CONTROL SYNJ1 -SH3KBP1 IN_SAME_COMPONENT CBL -SH3KBP1 IN_SAME_COMPONENT SH3GL2 -SH3KBP1 REACTS_WITH SH3GL2 -SH3KBP1 REACTS_WITH SH3KBP1 -SH3KBP1 STATE_CHANGE EGF -SH3KBP1 STATE_CHANGE EGFR -SH3KBP1 STATE_CHANGE HGF -SH3KBP1 STATE_CHANGE MET -SHANK3 IN_SAME_COMPONENT GDNF -SHANK3 IN_SAME_COMPONENT GFRA1 -SHANK3 REACTS_WITH GDNF -SHANK3 REACTS_WITH GFRA1 -SHANK3 REACTS_WITH SHANK3 -SHBG REACTS_WITH SHBG -SHB IN_SAME_COMPONENT KDR -SHB IN_SAME_COMPONENT PDGFRA -SHB IN_SAME_COMPONENT SRC -SHB IN_SAME_COMPONENT VEGFA -SHB REACTS_WITH KDR -SHB REACTS_WITH PDGFRA -SHB REACTS_WITH SHB -SHB REACTS_WITH SRC -SHB REACTS_WITH VEGFA -SHC1 CO_CONTROL DOK1 -SHC1 CO_CONTROL GAB2 -SHC1 CO_CONTROL GRB10 -SHC1 CO_CONTROL IL17RD -SHC1 CO_CONTROL INPP5D -SHC1 CO_CONTROL INS -SHC1 CO_CONTROL INSR -SHC1 CO_CONTROL IRS1 -SHC1 CO_CONTROL RASA1 -SHC1 CO_CONTROL SHC1 -SHC1 CO_CONTROL SOS1 -SHC1 IN_SAME_COMPONENT ANGPT1 -SHC1 IN_SAME_COMPONENT CBL -SHC1 IN_SAME_COMPONENT CSF2 -SHC1 IN_SAME_COMPONENT CSF2RA -SHC1 IN_SAME_COMPONENT CSF2RB -SHC1 IN_SAME_COMPONENT ERBB2 -SHC1 IN_SAME_COMPONENT ERBB3 -SHC1 IN_SAME_COMPONENT FRS2 -SHC1 IN_SAME_COMPONENT GAB1 -SHC1 IN_SAME_COMPONENT GAB2 -SHC1 IN_SAME_COMPONENT GDNF -SHC1 IN_SAME_COMPONENT GFRA1 -SHC1 IN_SAME_COMPONENT GRAP2 -SHC1 IN_SAME_COMPONENT GRB10 -SHC1 IN_SAME_COMPONENT IGF1 -SHC1 IN_SAME_COMPONENT IGF1R -SHC1 IN_SAME_COMPONENT IL2 -SHC1 IN_SAME_COMPONENT IL2RA -SHC1 IN_SAME_COMPONENT IL2RB -SHC1 IN_SAME_COMPONENT IL2RG -SHC1 IN_SAME_COMPONENT IL3 -SHC1 IN_SAME_COMPONENT IL3RA -SHC1 IN_SAME_COMPONENT IL4 -SHC1 IN_SAME_COMPONENT IL4R -SHC1 IN_SAME_COMPONENT INPP5D -SHC1 IN_SAME_COMPONENT INS -SHC1 IN_SAME_COMPONENT INSR -SHC1 IN_SAME_COMPONENT IRS1 -SHC1 IN_SAME_COMPONENT ITGA6 -SHC1 IN_SAME_COMPONENT ITGB4 -SHC1 IN_SAME_COMPONENT JAK1 -SHC1 IN_SAME_COMPONENT JAK2 -SHC1 IN_SAME_COMPONENT JAK3 -SHC1 IN_SAME_COMPONENT LCK -SHC1 IN_SAME_COMPONENT PIK3CA -SHC1 IN_SAME_COMPONENT PIK3R1 -SHC1 IN_SAME_COMPONENT PTPN1 -SHC1 IN_SAME_COMPONENT PTPN11 -SHC1 IN_SAME_COMPONENT RASA1 -SHC1 IN_SAME_COMPONENT SDC2 -SHC1 IN_SAME_COMPONENT SOS1 -SHC1 IN_SAME_COMPONENT TEK -SHC1 IN_SAME_COMPONENT YWHAZ -SHC1 METABOLIC_CATALYSIS CCND3 -SHC1 REACTS_WITH ANGPT1 -SHC1 REACTS_WITH CBL -SHC1 REACTS_WITH CSF2 -SHC1 REACTS_WITH CSF2RA -SHC1 REACTS_WITH CSF2RB -SHC1 REACTS_WITH ERBB2 -SHC1 REACTS_WITH ERBB3 -SHC1 REACTS_WITH FRS2 -SHC1 REACTS_WITH GAB1 -SHC1 REACTS_WITH GAB2 -SHC1 REACTS_WITH GDNF -SHC1 REACTS_WITH GFRA1 -SHC1 REACTS_WITH GRAP2 -SHC1 REACTS_WITH GRB10 -SHC1 REACTS_WITH IGF1 -SHC1 REACTS_WITH IGF1R -SHC1 REACTS_WITH IL2 -SHC1 REACTS_WITH IL2RA -SHC1 REACTS_WITH IL2RB -SHC1 REACTS_WITH IL2RG -SHC1 REACTS_WITH IL3 -SHC1 REACTS_WITH IL3RA -SHC1 REACTS_WITH IL4 -SHC1 REACTS_WITH IL4R -SHC1 REACTS_WITH INPP5D -SHC1 REACTS_WITH INS -SHC1 REACTS_WITH INSR -SHC1 REACTS_WITH IRS1 -SHC1 REACTS_WITH ITGA6 -SHC1 REACTS_WITH ITGB4 -SHC1 REACTS_WITH JAK1 -SHC1 REACTS_WITH JAK2 -SHC1 REACTS_WITH JAK3 -SHC1 REACTS_WITH LCK -SHC1 REACTS_WITH PIK3CA -SHC1 REACTS_WITH PIK3R1 -SHC1 REACTS_WITH PTPN1 -SHC1 REACTS_WITH PTPN11 -SHC1 REACTS_WITH RASA1 -SHC1 REACTS_WITH SDC2 -SHC1 REACTS_WITH SHC1 -SHC1 REACTS_WITH SOS1 -SHC1 REACTS_WITH SPRY2 -SHC1 REACTS_WITH TEK -SHC1 REACTS_WITH YWHAZ -SHC1 STATE_CHANGE AKT1 -SHC1 STATE_CHANGE CREB1 -SHC1 STATE_CHANGE DOK1 -SHC1 STATE_CHANGE HRAS -SHC1 STATE_CHANGE IKZF3 -SHC1 STATE_CHANGE MAP2K1 -SHC1 STATE_CHANGE PIK3CA -SHC1 STATE_CHANGE PIK3R1 -SHC1 STATE_CHANGE PRKCD -SHC1 STATE_CHANGE PRKCZ -SHC1 STATE_CHANGE PRKD1 -SHC1 STATE_CHANGE SGMS1 -SHC1 STATE_CHANGE SMPD1 -SHC1 STATE_CHANGE UGCG -SHC2 REACTS_WITH FLT1 -SHC2 REACTS_WITH VEGFA -SHF IN_SAME_COMPONENT PDGFRA -SHF REACTS_WITH PDGFRA -SHF REACTS_WITH SHF -SHH IN_SAME_COMPONENT BOC -SHH IN_SAME_COMPONENT CDON -SHH IN_SAME_COMPONENT GAS1 -SHH IN_SAME_COMPONENT GPC3 -SHH IN_SAME_COMPONENT HHIP -SHH IN_SAME_COMPONENT LRP2 -SHH IN_SAME_COMPONENT PTCH1 -SHH IN_SAME_COMPONENT PTCH2 -SHH METABOLIC_CATALYSIS GLI2 -SHH REACTS_WITH BOC -SHH REACTS_WITH CDON -SHH REACTS_WITH GAS1 -SHH REACTS_WITH GPC3 -SHH REACTS_WITH HHIP -SHH REACTS_WITH LRP2 -SHH REACTS_WITH LRPAP1 -SHH REACTS_WITH PTCH1 -SHH REACTS_WITH PTCH2 -SHH REACTS_WITH SHH -SHH STATE_CHANGE MAP2K1 -SHH STATE_CHANGE PRKCD -SHH STATE_CHANGE SMO -SHH STATE_CHANGE STIL -SIK1 REACTS_WITH SIK1 -SIK1 STATE_CHANGE CRTC2 -SIK1 STATE_CHANGE TP53 -SIK2 STATE_CHANGE CRTC2 -SIK3 REACTS_WITH SIK3 -SIK3 STATE_CHANGE CRTC2 -SIN3A CO_CONTROL ARRB2 -SIN3A CO_CONTROL CITED1 -SIN3A CO_CONTROL SMO -SIN3A IN_SAME_COMPONENT CTBP1 -SIN3A IN_SAME_COMPONENT HDAC1 -SIN3A IN_SAME_COMPONENT HDAC2 -SIN3A IN_SAME_COMPONENT MAX -SIN3A IN_SAME_COMPONENT MXD1 -SIN3A IN_SAME_COMPONENT MYB -SIN3A IN_SAME_COMPONENT NCOR1 -SIN3A IN_SAME_COMPONENT RBBP4 -SIN3A IN_SAME_COMPONENT RBBP7 -SIN3A IN_SAME_COMPONENT SAP18 -SIN3A IN_SAME_COMPONENT SAP30 -SIN3A IN_SAME_COMPONENT SIN3B -SIN3A IN_SAME_COMPONENT SKI -SIN3A IN_SAME_COMPONENT SKIL -SIN3A IN_SAME_COMPONENT SMAD2 -SIN3A IN_SAME_COMPONENT SMAD4 -SIN3A IN_SAME_COMPONENT SUFU -SIN3A IN_SAME_COMPONENT TGIF1 -SIN3A IN_SAME_COMPONENT TRIM28 -SIN3A IN_SAME_COMPONENT UBE3A -SIN3A METABOLIC_CATALYSIS MYC -SIN3A METABOLIC_CATALYSIS TERT -SIN3A REACTS_WITH HDAC1 -SIN3A REACTS_WITH HDAC2 -SIN3A REACTS_WITH MAX -SIN3A REACTS_WITH MXD1 -SIN3A REACTS_WITH MYB -SIN3A REACTS_WITH NCOR1 -SIN3A REACTS_WITH RBBP4 -SIN3A REACTS_WITH RBBP7 -SIN3A REACTS_WITH SAP18 -SIN3A REACTS_WITH SAP30 -SIN3A REACTS_WITH SIN3A -SIN3A REACTS_WITH SIN3B -SIN3A REACTS_WITH SKI -SIN3A REACTS_WITH SKIL -SIN3A REACTS_WITH SMAD2 -SIN3A REACTS_WITH SMAD4 -SIN3A REACTS_WITH SUFU -SIN3A REACTS_WITH TRIM28 -SIN3A REACTS_WITH UBE3A -SIN3A STATE_CHANGE GLI1 -SIN3A STATE_CHANGE GLI3 -SIN3A STATE_CHANGE SMAD2 -SIN3A STATE_CHANGE SMAD4 -SIN3B CO_CONTROL ARRB2 -SIN3B CO_CONTROL CITED1 -SIN3B CO_CONTROL SMO -SIN3B IN_SAME_COMPONENT CTBP1 -SIN3B IN_SAME_COMPONENT HDAC1 -SIN3B IN_SAME_COMPONENT HDAC2 -SIN3B IN_SAME_COMPONENT MAX -SIN3B IN_SAME_COMPONENT MXD1 -SIN3B IN_SAME_COMPONENT NCOR1 -SIN3B IN_SAME_COMPONENT RBBP4 -SIN3B IN_SAME_COMPONENT RBBP7 -SIN3B IN_SAME_COMPONENT SAP18 -SIN3B IN_SAME_COMPONENT SAP30 -SIN3B IN_SAME_COMPONENT SIN3A -SIN3B IN_SAME_COMPONENT SKI -SIN3B IN_SAME_COMPONENT SKIL -SIN3B IN_SAME_COMPONENT SMAD2 -SIN3B IN_SAME_COMPONENT SMAD4 -SIN3B IN_SAME_COMPONENT SUFU -SIN3B IN_SAME_COMPONENT TGIF1 -SIN3B IN_SAME_COMPONENT UBE3A -SIN3B METABOLIC_CATALYSIS TERT -SIN3B REACTS_WITH HDAC1 -SIN3B REACTS_WITH HDAC2 -SIN3B REACTS_WITH MAX -SIN3B REACTS_WITH MXD1 -SIN3B REACTS_WITH NCOR1 -SIN3B REACTS_WITH RBBP4 -SIN3B REACTS_WITH RBBP7 -SIN3B REACTS_WITH SAP18 -SIN3B REACTS_WITH SAP30 -SIN3B REACTS_WITH SIN3A -SIN3B REACTS_WITH SIN3B -SIN3B REACTS_WITH SKIL -SIN3B REACTS_WITH SMAD2 -SIN3B REACTS_WITH SMAD4 -SIN3B REACTS_WITH SUFU -SIN3B REACTS_WITH UBE3A -SIN3B STATE_CHANGE GLI1 -SIN3B STATE_CHANGE GLI3 -SIN3B STATE_CHANGE SMAD2 -SIN3B STATE_CHANGE SMAD4 -SIPA1 IN_SAME_COMPONENT MLLT4 -SIPA1 REACTS_WITH MLLT4 -SIPA1 REACTS_WITH SIPA1 -SIRT1 CO_CONTROL E2F1 -SIRT1 CO_CONTROL EP300 -SIRT1 CO_CONTROL FOXO3 -SIRT1 CO_CONTROL SP1 -SIRT1 IN_SAME_COMPONENT ARNT -SIRT1 IN_SAME_COMPONENT BAX -SIRT1 IN_SAME_COMPONENT EP300 -SIRT1 IN_SAME_COMPONENT EPAS1 -SIRT1 IN_SAME_COMPONENT FHL2 -SIRT1 IN_SAME_COMPONENT FOXO1 -SIRT1 IN_SAME_COMPONENT FOXO3 -SIRT1 IN_SAME_COMPONENT FOXO4 -SIRT1 IN_SAME_COMPONENT HDAC4 -SIRT1 IN_SAME_COMPONENT HIST1H1E -SIRT1 IN_SAME_COMPONENT KAT2B -SIRT1 IN_SAME_COMPONENT MEF2D -SIRT1 IN_SAME_COMPONENT MYOD1 -SIRT1 IN_SAME_COMPONENT PPARGC1A -SIRT1 IN_SAME_COMPONENT TP53 -SIRT1 IN_SAME_COMPONENT XRCC6 -SIRT1 METABOLIC_CATALYSIS BCL2L11 -SIRT1 METABOLIC_CATALYSIS CDKN1A -SIRT1 METABOLIC_CATALYSIS CDKN1B -SIRT1 METABOLIC_CATALYSIS E2F1 -SIRT1 METABOLIC_CATALYSIS EPO -SIRT1 METABOLIC_CATALYSIS FASLG -SIRT1 METABOLIC_CATALYSIS GADD45A -SIRT1 METABOLIC_CATALYSIS SOD2 -SIRT1 REACTS_WITH ARNT -SIRT1 REACTS_WITH BAX -SIRT1 REACTS_WITH EP300 -SIRT1 REACTS_WITH EPAS1 -SIRT1 REACTS_WITH FHL2 -SIRT1 REACTS_WITH FOXO1 -SIRT1 REACTS_WITH FOXO3 -SIRT1 REACTS_WITH FOXO4 -SIRT1 REACTS_WITH HDAC4 -SIRT1 REACTS_WITH HIST1H1E -SIRT1 REACTS_WITH KAT2B -SIRT1 REACTS_WITH MEF2D -SIRT1 REACTS_WITH MYOD1 -SIRT1 REACTS_WITH PPARGC1A -SIRT1 REACTS_WITH SIRT1 -SIRT1 REACTS_WITH TP53 -SIRT1 REACTS_WITH XRCC6 -SIRT1 STATE_CHANGE ACSS2 -SIRT1 STATE_CHANGE AR -SIRT1 STATE_CHANGE FOXO3 -SIRT1 STATE_CHANGE NCOA2 -SIRT1 STATE_CHANGE RB1 -SIRT2 IN_SAME_COMPONENT HOXA10 -SIRT2 IN_SAME_COMPONENT TUBB2A -SIRT2 REACTS_WITH HOXA10 -SIRT2 REACTS_WITH SIRT2 -SIRT2 REACTS_WITH TUBB2A -SIRT3 STATE_CHANGE ACSS1 -SIRT7 REACTS_WITH SIRT7 -SKI CO_CONTROL CITED1 -SKI IN_SAME_COMPONENT HDAC1 -SKI IN_SAME_COMPONENT HDAC2 -SKI IN_SAME_COMPONENT MYB -SKI IN_SAME_COMPONENT NCOR1 -SKI IN_SAME_COMPONENT RBBP4 -SKI IN_SAME_COMPONENT RBBP7 -SKI IN_SAME_COMPONENT SAP18 -SKI IN_SAME_COMPONENT SAP30 -SKI IN_SAME_COMPONENT SIN3A -SKI IN_SAME_COMPONENT SIN3B -SKI IN_SAME_COMPONENT SMAD1 -SKI IN_SAME_COMPONENT SMAD5 -SKI IN_SAME_COMPONENT TRIM28 -SKIL IN_SAME_COMPONENT HDAC1 -SKIL IN_SAME_COMPONENT HDAC2 -SKIL IN_SAME_COMPONENT NCOR1 -SKIL IN_SAME_COMPONENT RBBP4 -SKIL IN_SAME_COMPONENT RBBP7 -SKIL IN_SAME_COMPONENT SAP18 -SKIL IN_SAME_COMPONENT SAP30 -SKIL IN_SAME_COMPONENT SIN3A -SKIL IN_SAME_COMPONENT SIN3B -SKIL IN_SAME_COMPONENT SMAD2 -SKIL IN_SAME_COMPONENT SMAD4 -SKIL REACTS_WITH HDAC1 -SKIL REACTS_WITH HDAC2 -SKIL REACTS_WITH NCOR1 -SKIL REACTS_WITH RBBP4 -SKIL REACTS_WITH RBBP7 -SKIL REACTS_WITH SAP18 -SKIL REACTS_WITH SAP30 -SKIL REACTS_WITH SIN3A -SKIL REACTS_WITH SIN3B -SKIL REACTS_WITH SKIL -SKIL REACTS_WITH SMAD2 -SKIL REACTS_WITH SMAD4 -SKI METABOLIC_CATALYSIS MYC -SKI REACTS_WITH MYB -SKI REACTS_WITH NCOR1 -SKI REACTS_WITH SIN3A -SKI REACTS_WITH SKI -SKI REACTS_WITH SMAD1 -SKI REACTS_WITH SMAD5 -SKI REACTS_WITH TRIM28 -SKI STATE_CHANGE SMAD2 -SKI STATE_CHANGE SMAD4 -SKP1 IN_SAME_COMPONENT BTRC -SKP1 IN_SAME_COMPONENT CTNNB1 -SKP1 IN_SAME_COMPONENT CUL1 -SKP1 IN_SAME_COMPONENT FBXW7 -SKP1 IN_SAME_COMPONENT TCF7L2 -SKP1 IN_SAME_COMPONENT TRRAP -SKP1 REACTS_WITH BTRC -SKP1 REACTS_WITH CTNNB1 -SKP1 REACTS_WITH CUL1 -SKP1 REACTS_WITH SKP1 -SKP1 REACTS_WITH TCF7L2 -SKP1 REACTS_WITH TRRAP -SKP1 STATE_CHANGE APC -SKP1 STATE_CHANGE CTNNB1 -SKP2 IN_SAME_COMPONENT CDKN1B -SKP2 IN_SAME_COMPONENT FOXO1 -SKP2 IN_SAME_COMPONENT RB1 -SKP2 REACTS_WITH CDKN1B -SKP2 REACTS_WITH FOXO1 -SKP2 REACTS_WITH RB1 -SKP2 REACTS_WITH SKP2 -SKP2 STATE_CHANGE MAX -SKP2 STATE_CHANGE MYC -SKP2 STATE_CHANGE TP53 -SLA2 IN_SAME_COMPONENT CBL -SLA2 IN_SAME_COMPONENT CD247 -SLA2 IN_SAME_COMPONENT CD3D -SLA2 IN_SAME_COMPONENT CD3E -SLA2 IN_SAME_COMPONENT CD3G -SLA2 IN_SAME_COMPONENT CD4 -SLA2 IN_SAME_COMPONENT HLA-DRA -SLA2 IN_SAME_COMPONENT HLA-DRB1 -SLA2 IN_SAME_COMPONENT LCK -SLA2 IN_SAME_COMPONENT ZAP70 -SLA2 REACTS_WITH CBL -SLA2 REACTS_WITH CD247 -SLA2 REACTS_WITH CD3D -SLA2 REACTS_WITH CD3E -SLA2 REACTS_WITH CD3G -SLA2 REACTS_WITH CD4 -SLA2 REACTS_WITH HLA-DRA -SLA2 REACTS_WITH HLA-DRB1 -SLA2 REACTS_WITH LCK -SLA2 REACTS_WITH SLA2 -SLA2 REACTS_WITH ZAP70 -SLA CO_CONTROL PDGFB -SLA CO_CONTROL PDGFRB -SLC2A4 IN_SAME_COMPONENT ACAP1 -SLC2A4 IN_SAME_COMPONENT CLTC -SLC2A4 IN_SAME_COMPONENT LNPEP -SLC2A4 IN_SAME_COMPONENT VAMP2 -SLC2A4 REACTS_WITH ACAP1 -SLC2A4 REACTS_WITH CLTC -SLC2A4 REACTS_WITH LNPEP -SLC2A4 REACTS_WITH SLC2A4 -SLC2A4 REACTS_WITH VAMP2 -SLC6A3 IN_SAME_COMPONENT SNCA -SLC6A3 REACTS_WITH SLC6A3 -SLC6A3 REACTS_WITH SNCA -SLC9A1 IN_SAME_COMPONENT CALM1 -SLC9A1 REACTS_WITH CALM1 -SLC9A1 REACTS_WITH SLC9A1 -SLC9A3R1 REACTS_WITH GNB5 -SLC9A3R1 REACTS_WITH GNG2 -SLC9A3R1 REACTS_WITH SLC9A3R1 -SLC9A3R1 STATE_CHANGE ARR3 -SLC9A3R1 STATE_CHANGE ARRB2 -SLC9A3R1 STATE_CHANGE TBXA2R -SLC9A3R2 IN_SAME_COMPONENT LPAR2 -SLC9A3R2 REACTS_WITH LPAR2 -SLC9A3R2 REACTS_WITH SLC9A3R2 -SLC9A3R2 STATE_CHANGE PLCB3 -SLIT1 IN_SAME_COMPONENT ABL1 -SLIT1 IN_SAME_COMPONENT CABLES1 -SLIT1 IN_SAME_COMPONENT ROBO1 -SLIT1 STATE_CHANGE CDH2 -SLIT1 STATE_CHANGE CTNNA1 -SLIT1 STATE_CHANGE CTNNB1 -SLIT1 STATE_CHANGE CTNND1 -SLIT2 IN_SAME_COMPONENT GPC1 -SLIT2 REACTS_WITH GPC1 -SLIT2 REACTS_WITH SLIT2 -SMAD1 CO_CONTROL NUP214 -SMAD1 IN_SAME_COMPONENT SKI -SMAD1 IN_SAME_COMPONENT SMAD4 -SMAD1 IN_SAME_COMPONENT SMAD6 -SMAD1 IN_SAME_COMPONENT SMURF1 -SMAD1 IN_SAME_COMPONENT SMURF2 -SMAD1 IN_SAME_COMPONENT ZFYVE16 -SMAD1 REACTS_WITH BMP7 -SMAD1 REACTS_WITH BMPR2 -SMAD1 REACTS_WITH PPP1CA -SMAD1 REACTS_WITH PPP1R15A -SMAD1 REACTS_WITH SKI -SMAD1 REACTS_WITH SMAD1 -SMAD1 REACTS_WITH SMAD4 -SMAD1 REACTS_WITH SMAD6 -SMAD1 REACTS_WITH SMAD7 -SMAD1 REACTS_WITH SMURF1 -SMAD1 REACTS_WITH SMURF2 -SMAD1 REACTS_WITH ZFYVE16 -SMAD1 STATE_CHANGE SMAD1 -SMAD1 STATE_CHANGE SMAD4 -SMAD2 CO_CONTROL SMAD4 -SMAD2 IN_SAME_COMPONENT DCP1A -SMAD2 IN_SAME_COMPONENT DYNLRB1 -SMAD2 IN_SAME_COMPONENT FOXH1 -SMAD2 IN_SAME_COMPONENT HDAC1 -SMAD2 IN_SAME_COMPONENT HDAC2 -SMAD2 IN_SAME_COMPONENT NCOR1 -SMAD2 IN_SAME_COMPONENT NEDD4L -SMAD2 IN_SAME_COMPONENT NKX2-5 -SMAD2 IN_SAME_COMPONENT RBBP4 -SMAD2 IN_SAME_COMPONENT RBBP7 -SMAD2 IN_SAME_COMPONENT SAP18 -SMAD2 IN_SAME_COMPONENT SAP30 -SMAD2 IN_SAME_COMPONENT SIN3A -SMAD2 IN_SAME_COMPONENT SIN3B -SMAD2 IN_SAME_COMPONENT SKIL -SMAD2 IN_SAME_COMPONENT SMAD4 -SMAD2 IN_SAME_COMPONENT SMURF2 -SMAD2 IN_SAME_COMPONENT TGFBR1 -SMAD2 IN_SAME_COMPONENT TGFBR2 -SMAD2 METABOLIC_CATALYSIS GSC -SMAD2 METABOLIC_CATALYSIS MEF2C -SMAD2 REACTS_WITH DCP1A -SMAD2 REACTS_WITH DYNLRB1 -SMAD2 REACTS_WITH FOXH1 -SMAD2 REACTS_WITH HDAC1 -SMAD2 REACTS_WITH HDAC2 -SMAD2 REACTS_WITH NCOR1 -SMAD2 REACTS_WITH NEDD4L -SMAD2 REACTS_WITH NKX2-5 -SMAD2 REACTS_WITH RBBP4 -SMAD2 REACTS_WITH RBBP7 -SMAD2 REACTS_WITH SAP18 -SMAD2 REACTS_WITH SAP30 -SMAD2 REACTS_WITH SIN3A -SMAD2 REACTS_WITH SIN3B -SMAD2 REACTS_WITH SKIL -SMAD2 REACTS_WITH SMAD2 -SMAD2 REACTS_WITH SMAD4 -SMAD2 REACTS_WITH SMURF2 -SMAD2 REACTS_WITH TGFBR1 -SMAD2 REACTS_WITH TGFBR2 -SMAD2 REACTS_WITH TGFBRAP1 -SMAD2 REACTS_WITH ZFYVE16 -SMAD4 CO_CONTROL CEBPB -SMAD4 CO_CONTROL CREB1 -SMAD4 CO_CONTROL ESR1 -SMAD4 CO_CONTROL FOS -SMAD4 CO_CONTROL FOXG1 -SMAD4 CO_CONTROL FOXH1 -SMAD4 CO_CONTROL JUN -SMAD4 CO_CONTROL MAX -SMAD4 CO_CONTROL MYC -SMAD4 CO_CONTROL NR3C1 -SMAD4 CO_CONTROL SMAD2 -SMAD4 CO_CONTROL SMAD4 -SMAD4 CO_CONTROL SP1 -SMAD4 CO_CONTROL TFE3 -SMAD4 CO_CONTROL ZBTB17 -SMAD4 IN_SAME_COMPONENT AR -SMAD4 IN_SAME_COMPONENT ARNT -SMAD4 IN_SAME_COMPONENT ATF2 -SMAD4 IN_SAME_COMPONENT ATF3 -SMAD4 IN_SAME_COMPONENT CBFB -SMAD4 IN_SAME_COMPONENT CEBPB -SMAD4 IN_SAME_COMPONENT DCP1A -SMAD4 IN_SAME_COMPONENT DLX1 -SMAD4 IN_SAME_COMPONENT ESR1 -SMAD4 IN_SAME_COMPONENT FOS -SMAD4 IN_SAME_COMPONENT FOXG1 -SMAD4 IN_SAME_COMPONENT FOXH1 -SMAD4 IN_SAME_COMPONENT GATA3 -SMAD4 IN_SAME_COMPONENT HDAC1 -SMAD4 IN_SAME_COMPONENT HDAC2 -SMAD4 IN_SAME_COMPONENT HIF1A -SMAD4 IN_SAME_COMPONENT HNF4A -SMAD4 IN_SAME_COMPONENT IRF7 -SMAD4 IN_SAME_COMPONENT JUN -SMAD4 IN_SAME_COMPONENT MAX -SMAD4 IN_SAME_COMPONENT MED15 -SMAD4 IN_SAME_COMPONENT MEF2C -SMAD4 IN_SAME_COMPONENT MYC -SMAD4 IN_SAME_COMPONENT MYOD1 -SMAD4 IN_SAME_COMPONENT NCOR1 -SMAD4 IN_SAME_COMPONENT NKX2-5 -SMAD4 IN_SAME_COMPONENT NR3C1 -SMAD4 IN_SAME_COMPONENT PIAS4 -SMAD4 IN_SAME_COMPONENT RBBP4 -SMAD4 IN_SAME_COMPONENT RBBP7 -SMAD4 IN_SAME_COMPONENT RBL1 -SMAD4 IN_SAME_COMPONENT RUNX2 -SMAD4 IN_SAME_COMPONENT SAP18 -SMAD4 IN_SAME_COMPONENT SAP30 -SMAD4 IN_SAME_COMPONENT SIN3A -SMAD4 IN_SAME_COMPONENT SIN3B -SMAD4 IN_SAME_COMPONENT SKIL -SMAD4 IN_SAME_COMPONENT SMAD1 -SMAD4 IN_SAME_COMPONENT SMAD2 -SMAD4 IN_SAME_COMPONENT SMAD5 -SMAD4 IN_SAME_COMPONENT SMAD9 -SMAD4 IN_SAME_COMPONENT SP1 -SMAD4 IN_SAME_COMPONENT STK11 -SMAD4 IN_SAME_COMPONENT STK11IP -SMAD4 IN_SAME_COMPONENT TFDP1 -SMAD4 IN_SAME_COMPONENT TFE3 -SMAD4 IN_SAME_COMPONENT TGFBR1 -SMAD4 IN_SAME_COMPONENT TGFBR2 -SMAD4 IN_SAME_COMPONENT TGFBRAP1 -SMAD4 IN_SAME_COMPONENT TGIF2 -SMAD4 IN_SAME_COMPONENT UBE2I -SMAD4 IN_SAME_COMPONENT VDR -SMAD4 IN_SAME_COMPONENT ZBTB17 -SMAD4 IN_SAME_COMPONENT ZFYVE16 -SMAD4 METABOLIC_CATALYSIS CDKN1A -SMAD4 METABOLIC_CATALYSIS CDKN2B -SMAD4 METABOLIC_CATALYSIS COL1A2 -SMAD4 METABOLIC_CATALYSIS ENG -SMAD4 METABOLIC_CATALYSIS GSC -SMAD4 METABOLIC_CATALYSIS ID1 -SMAD4 METABOLIC_CATALYSIS IFNB1 -SMAD4 METABOLIC_CATALYSIS IGHA1 -SMAD4 METABOLIC_CATALYSIS IL10 -SMAD4 METABOLIC_CATALYSIS IL5 -SMAD4 METABOLIC_CATALYSIS ITGB5 -SMAD4 METABOLIC_CATALYSIS JUN -SMAD4 METABOLIC_CATALYSIS LAMC1 -SMAD4 METABOLIC_CATALYSIS MEF2C -SMAD4 METABOLIC_CATALYSIS SERPINE1 -SMAD4 METABOLIC_CATALYSIS SMAD7 -SMAD4 METABOLIC_CATALYSIS SNAI1 -SMAD4 METABOLIC_CATALYSIS TLX2 -SMAD4 REACTS_WITH AR -SMAD4 REACTS_WITH ARNT -SMAD4 REACTS_WITH ATF2 -SMAD4 REACTS_WITH CBFB -SMAD4 REACTS_WITH CEBPB -SMAD4 REACTS_WITH DCP1A -SMAD4 REACTS_WITH DLX1 -SMAD4 REACTS_WITH ESR1 -SMAD4 REACTS_WITH FOS -SMAD4 REACTS_WITH FOXG1 -SMAD4 REACTS_WITH FOXH1 -SMAD4 REACTS_WITH GATA3 -SMAD4 REACTS_WITH HDAC1 -SMAD4 REACTS_WITH HDAC2 -SMAD4 REACTS_WITH HIF1A -SMAD4 REACTS_WITH HNF4A -SMAD4 REACTS_WITH IRF7 -SMAD4 REACTS_WITH JUN -SMAD4 REACTS_WITH MAX -SMAD4 REACTS_WITH MED15 -SMAD4 REACTS_WITH MEF2C -SMAD4 REACTS_WITH MYC -SMAD4 REACTS_WITH MYOD1 -SMAD4 REACTS_WITH NCOA2 -SMAD4 REACTS_WITH NCOR1 -SMAD4 REACTS_WITH NKX2-5 -SMAD4 REACTS_WITH NR3C1 -SMAD4 REACTS_WITH PIAS4 -SMAD4 REACTS_WITH RBBP4 -SMAD4 REACTS_WITH RBBP7 -SMAD4 REACTS_WITH RUNX2 -SMAD4 REACTS_WITH SAP18 -SMAD4 REACTS_WITH SAP30 -SMAD4 REACTS_WITH SIN3A -SMAD4 REACTS_WITH SIN3B -SMAD4 REACTS_WITH SKIL -SMAD4 REACTS_WITH SMAD1 -SMAD4 REACTS_WITH SMAD2 -SMAD4 REACTS_WITH SMAD4 -SMAD4 REACTS_WITH SMAD5 -SMAD4 REACTS_WITH SMAD6 -SMAD4 REACTS_WITH SMAD9 -SMAD4 REACTS_WITH SP1 -SMAD4 REACTS_WITH STK11 -SMAD4 REACTS_WITH STK11IP -SMAD4 REACTS_WITH TCF3 -SMAD4 REACTS_WITH TFE3 -SMAD4 REACTS_WITH TGFBR1 -SMAD4 REACTS_WITH TGFBR2 -SMAD4 REACTS_WITH TGFBRAP1 -SMAD4 REACTS_WITH TGIF2 -SMAD4 REACTS_WITH UBE2I -SMAD4 REACTS_WITH VDR -SMAD4 REACTS_WITH ZBTB17 -SMAD4 REACTS_WITH ZFYVE16 -SMAD5 IN_SAME_COMPONENT SKI -SMAD5 IN_SAME_COMPONENT SMAD4 -SMAD5 IN_SAME_COMPONENT SMAD6 -SMAD5 IN_SAME_COMPONENT SMURF1 -SMAD5 REACTS_WITH SKI -SMAD5 REACTS_WITH SMAD4 -SMAD5 REACTS_WITH SMAD5 -SMAD5 REACTS_WITH SMAD6 -SMAD5 REACTS_WITH SMURF1 -SMAD6 CO_CONTROL BMPR2 -SMAD6 CO_CONTROL XIAP -SMAD6 IN_SAME_COMPONENT BMP7 -SMAD6 IN_SAME_COMPONENT BMPR2 -SMAD6 IN_SAME_COMPONENT MAP3K7 -SMAD6 IN_SAME_COMPONENT SMAD1 -SMAD6 IN_SAME_COMPONENT SMAD5 -SMAD6 IN_SAME_COMPONENT SMURF1 -SMAD6 REACTS_WITH BMP7 -SMAD6 REACTS_WITH BMPR2 -SMAD6 REACTS_WITH SMAD1 -SMAD6 REACTS_WITH SMAD4 -SMAD6 REACTS_WITH SMAD5 -SMAD6 REACTS_WITH SMAD6 -SMAD6 REACTS_WITH SMURF1 -SMAD6 STATE_CHANGE MAP3K7 -SMAD7 CO_CONTROL TGFBR1 -SMAD7 CO_CONTROL TGFBR2 -SMAD7 CO_CONTROL ZFYVE9 -SMAD7 IN_SAME_COMPONENT AXIN1 -SMAD7 IN_SAME_COMPONENT BMPR2 -SMAD7 IN_SAME_COMPONENT CAV1 -SMAD7 IN_SAME_COMPONENT HDAC1 -SMAD7 IN_SAME_COMPONENT NEDD4L -SMAD7 IN_SAME_COMPONENT PPP1CA -SMAD7 IN_SAME_COMPONENT PPP1R15A -SMAD7 IN_SAME_COMPONENT RNF111 -SMAD7 IN_SAME_COMPONENT SMURF1 -SMAD7 IN_SAME_COMPONENT STRAP -SMAD7 IN_SAME_COMPONENT TGFBR1 -SMAD7 IN_SAME_COMPONENT TGFBR2 -SMAD7 IN_SAME_COMPONENT WWP1 -SMAD7 IN_SAME_COMPONENT YAP1 -SMAD7 REACTS_WITH AXIN1 -SMAD7 REACTS_WITH BMPR2 -SMAD7 REACTS_WITH CAV1 -SMAD7 REACTS_WITH HDAC1 -SMAD7 REACTS_WITH NEDD4L -SMAD7 REACTS_WITH PPP1CA -SMAD7 REACTS_WITH PPP1R15A -SMAD7 REACTS_WITH RNF111 -SMAD7 REACTS_WITH SMAD1 -SMAD7 REACTS_WITH SMAD7 -SMAD7 REACTS_WITH SMURF1 -SMAD7 REACTS_WITH STRAP -SMAD7 REACTS_WITH TGFBR1 -SMAD7 REACTS_WITH TGFBR2 -SMAD7 REACTS_WITH WWP1 -SMAD7 REACTS_WITH YAP1 -SMAD7 REACTS_WITH ZFYVE9 -SMAD7 STATE_CHANGE ACVRL1 -SMAD7 STATE_CHANGE CTNNB1 -SMAD7 STATE_CHANGE MAP3K7 -SMAD7 STATE_CHANGE PPP1CA -SMAD7 STATE_CHANGE SMAD2 -SMAD7 STATE_CHANGE TGFB1 -SMAD7 STATE_CHANGE TGFBR1 -SMAD7 STATE_CHANGE TGFBR2 -SMAD7 STATE_CHANGE XIAP -SMAD9 IN_SAME_COMPONENT SMAD4 -SMAD9 REACTS_WITH SMAD4 -SMAD9 REACTS_WITH SMAD9 -SMARCA2 CO_CONTROL AR -SMARCA2 CO_CONTROL TFDP1 -SMARCA2 CO_CONTROL ZMIZ2 -SMARCA2 IN_SAME_COMPONENT CEBPA -SMARCA2 IN_SAME_COMPONENT E2F4 -SMARCA2 IN_SAME_COMPONENT RB1 -SMARCA2 IN_SAME_COMPONENT SMARCE1 -SMARCA2 METABOLIC_CATALYSIS KLK3 -SMARCA2 METABOLIC_CATALYSIS LECT2 -SMARCA2 METABOLIC_CATALYSIS MYC -SMARCA2 REACTS_WITH CDK2 -SMARCA2 REACTS_WITH CEBPA -SMARCA2 REACTS_WITH E2F4 -SMARCA2 REACTS_WITH RB1 -SMARCA2 REACTS_WITH SMARCA2 -SMARCA4 CO_CONTROL HDAC2 -SMARCA4 CO_CONTROL POU4F1 -SMARCA4 CO_CONTROL TADA2B -SMARCA4 CO_CONTROL TAF9 -SMARCA4 CO_CONTROL TP53 -SMARCA4 CO_CONTROL ZNF385A -SMARCA4 IN_SAME_COMPONENT SMARCB1 -SMARCA4 IN_SAME_COMPONENT SMARCC1 -SMARCA4 IN_SAME_COMPONENT SMARCC2 -SMARCA4 IN_SAME_COMPONENT SMARCD1 -SMARCA4 METABOLIC_CATALYSIS CDKN1A -SMARCA4 METABOLIC_CATALYSIS SGK1 -SMARCA4 REACTS_WITH CTNNB1 -SMARCA4 REACTS_WITH SMARCA4 -SMARCA4 REACTS_WITH SMARCC1 -SMARCA4 REACTS_WITH SMARCC2 -SMARCA4 REACTS_WITH SMARCD1 -SMARCA4 REACTS_WITH TCF7L1 -SMARCA4 REACTS_WITH TERT -SMARCAL1 IN_SAME_COMPONENT ATR -SMARCAL1 IN_SAME_COMPONENT ATRIP -SMARCAL1 IN_SAME_COMPONENT HUS1 -SMARCAL1 IN_SAME_COMPONENT RAD1 -SMARCAL1 IN_SAME_COMPONENT RAD17 -SMARCAL1 IN_SAME_COMPONENT RAD9A -SMARCAL1 IN_SAME_COMPONENT RFC2 -SMARCAL1 IN_SAME_COMPONENT RFC3 -SMARCAL1 IN_SAME_COMPONENT RFC4 -SMARCAL1 IN_SAME_COMPONENT RFC5 -SMARCAL1 IN_SAME_COMPONENT RPA1 -SMARCAL1 IN_SAME_COMPONENT RPA2 -SMARCAL1 IN_SAME_COMPONENT TOPBP1 -SMARCAL1 REACTS_WITH ATR -SMARCAL1 REACTS_WITH ATRIP -SMARCAL1 REACTS_WITH HUS1 -SMARCAL1 REACTS_WITH RAD1 -SMARCAL1 REACTS_WITH RAD17 -SMARCAL1 REACTS_WITH RAD9A -SMARCAL1 REACTS_WITH RFC2 -SMARCAL1 REACTS_WITH RFC3 -SMARCAL1 REACTS_WITH RFC4 -SMARCAL1 REACTS_WITH RFC5 -SMARCAL1 REACTS_WITH RPA1 -SMARCAL1 REACTS_WITH RPA2 -SMARCAL1 REACTS_WITH SMARCAL1 -SMARCAL1 REACTS_WITH TOPBP1 -SMARCB1 IN_SAME_COMPONENT SMARCA4 -SMARCB1 METABOLIC_CATALYSIS CDKN1A -SMARCC1 CO_CONTROL AR -SMARCC1 CO_CONTROL NCOA1 -SMARCC1 IN_SAME_COMPONENT SMARCA4 -SMARCC1 IN_SAME_COMPONENT SMARCC2 -SMARCC1 IN_SAME_COMPONENT SMARCD1 -SMARCC1 METABOLIC_CATALYSIS KLK3 -SMARCC1 METABOLIC_CATALYSIS SGK1 -SMARCC1 METABOLIC_CATALYSIS SMARCC1 -SMARCC1 REACTS_WITH SMARCA4 -SMARCC1 REACTS_WITH SMARCC1 -SMARCC1 REACTS_WITH SMARCC2 -SMARCC1 REACTS_WITH SMARCD1 -SMARCC2 IN_SAME_COMPONENT SMARCA4 -SMARCC2 IN_SAME_COMPONENT SMARCC1 -SMARCC2 IN_SAME_COMPONENT SMARCD1 -SMARCC2 METABOLIC_CATALYSIS SGK1 -SMARCC2 REACTS_WITH SMARCA4 -SMARCC2 REACTS_WITH SMARCC1 -SMARCC2 REACTS_WITH SMARCC2 -SMARCC2 REACTS_WITH SMARCD1 -SMARCD1 IN_SAME_COMPONENT SMARCA4 -SMARCD1 IN_SAME_COMPONENT SMARCC1 -SMARCD1 IN_SAME_COMPONENT SMARCC2 -SMARCD1 METABOLIC_CATALYSIS SGK1 -SMARCD1 REACTS_WITH SMARCA4 -SMARCD1 REACTS_WITH SMARCC1 -SMARCD1 REACTS_WITH SMARCC2 -SMARCD1 REACTS_WITH SMARCD1 -SMARCE1 CO_CONTROL AR -SMARCE1 CO_CONTROL ZMIZ2 -SMARCE1 IN_SAME_COMPONENT SMARCA2 -SMARCE1 METABOLIC_CATALYSIS KLK3 -SMC2 IN_SAME_COMPONENT NCAPD2 -SMC2 IN_SAME_COMPONENT NCAPG -SMC2 IN_SAME_COMPONENT NCAPH -SMC2 IN_SAME_COMPONENT SMC4 -SMC2 REACTS_WITH NCAPD2 -SMC2 REACTS_WITH NCAPG -SMC2 REACTS_WITH NCAPH -SMC2 REACTS_WITH SMC2 -SMC2 REACTS_WITH SMC4 -SMC4 IN_SAME_COMPONENT NCAPD2 -SMC4 IN_SAME_COMPONENT NCAPG -SMC4 IN_SAME_COMPONENT NCAPH -SMC4 IN_SAME_COMPONENT SMC2 -SMC4 REACTS_WITH NCAPD2 -SMC4 REACTS_WITH NCAPG -SMC4 REACTS_WITH NCAPH -SMC4 REACTS_WITH SMC2 -SMC4 REACTS_WITH SMC4 -SMG5 IN_SAME_COMPONENT DKC1 -SMG5 IN_SAME_COMPONENT HDAC8 -SMG5 IN_SAME_COMPONENT HSP90AA1 -SMG5 IN_SAME_COMPONENT PTGES3 -SMG5 IN_SAME_COMPONENT TERT -SMG5 REACTS_WITH DKC1 -SMG5 REACTS_WITH HDAC8 -SMG5 REACTS_WITH HSP90AA1 -SMG5 REACTS_WITH PTGES3 -SMG5 REACTS_WITH SMG5 -SMG5 REACTS_WITH TERT -SMG6 IN_SAME_COMPONENT DKC1 -SMG6 IN_SAME_COMPONENT HSP90AA1 -SMG6 IN_SAME_COMPONENT PTGES3 -SMG6 IN_SAME_COMPONENT TERT -SMG6 REACTS_WITH DKC1 -SMG6 REACTS_WITH HSP90AA1 -SMG6 REACTS_WITH PTGES3 -SMG6 REACTS_WITH SMG6 -SMG6 REACTS_WITH TERT -SMO CO_CONTROL HDAC1 -SMO CO_CONTROL HDAC2 -SMO CO_CONTROL PRKACA -SMO CO_CONTROL RAB23 -SMO CO_CONTROL RBBP4 -SMO CO_CONTROL RBBP7 -SMO CO_CONTROL SAP18 -SMO CO_CONTROL SAP30 -SMO CO_CONTROL SIN3A -SMO CO_CONTROL SIN3B -SMO CO_CONTROL STK36 -SMO CO_CONTROL SUFU -SMO IN_SAME_COMPONENT ARRB2 -SMO METABOLIC_CATALYSIS GLI2 -SMO METABOLIC_CATALYSIS GLI3 -SMO REACTS_WITH ARRB2 -SMO REACTS_WITH SMO -SMO STATE_CHANGE AKT1 -SMO STATE_CHANGE GLI1 -SMO STATE_CHANGE GLI2 -SMO STATE_CHANGE GLI3 -SMO STATE_CHANGE GNG2 -SMO STATE_CHANGE SUFU -SMPD1 CO_CONTROL EGF -SMPD1 CO_CONTROL SGMS1 -SMPD2 IN_SAME_COMPONENT NSMAF -SMPD2 IN_SAME_COMPONENT TNF -SMPD2 IN_SAME_COMPONENT TNFRSF1A -SMPD2 REACTS_WITH NSMAF -SMPD2 REACTS_WITH SMPD2 -SMPD2 REACTS_WITH TNF -SMPD2 REACTS_WITH TNFRSF1A -SMPD3 CO_CONTROL EGF -SMURF1 CO_CONTROL NUP214 -SMURF1 IN_SAME_COMPONENT BMP7 -SMURF1 IN_SAME_COMPONENT BMPR2 -SMURF1 IN_SAME_COMPONENT OCLN -SMURF1 IN_SAME_COMPONENT PARD6A -SMURF1 IN_SAME_COMPONENT SMAD1 -SMURF1 IN_SAME_COMPONENT SMAD5 -SMURF1 IN_SAME_COMPONENT SMAD6 -SMURF1 IN_SAME_COMPONENT SMAD7 -SMURF1 IN_SAME_COMPONENT TGFBR1 -SMURF1 IN_SAME_COMPONENT TGFBR2 -SMURF1 REACTS_WITH BMP7 -SMURF1 REACTS_WITH BMPR2 -SMURF1 REACTS_WITH OCLN -SMURF1 REACTS_WITH PARD6A -SMURF1 REACTS_WITH SMAD1 -SMURF1 REACTS_WITH SMAD5 -SMURF1 REACTS_WITH SMAD6 -SMURF1 REACTS_WITH SMAD7 -SMURF1 REACTS_WITH SMURF1 -SMURF1 REACTS_WITH TGFBR1 -SMURF1 REACTS_WITH TGFBR2 -SMURF1 STATE_CHANGE HDAC1 -SMURF1 STATE_CHANGE SMAD1 -SMURF1 STATE_CHANGE SMAD4 -SMURF1 STATE_CHANGE SMAD7 -SMURF2 IN_SAME_COMPONENT SMAD1 -SMURF2 IN_SAME_COMPONENT SMAD2 -SMURF2 REACTS_WITH DYNLRB1 -SMURF2 REACTS_WITH SMAD1 -SMURF2 REACTS_WITH SMAD2 -SMURF2 REACTS_WITH SMURF2 -SMURF2 REACTS_WITH TGFBR1 -SMURF2 REACTS_WITH TGFBR2 -SMYD2 CO_CONTROL TP53 -SMYD2 STATE_CHANGE TP53 -SNAI1 METABOLIC_CATALYSIS EGR1 -SNAI2 CO_CONTROL SP1 -SNAI2 CO_CONTROL TADA2B -SNAI2 CO_CONTROL TAF9 -SNAI2 CO_CONTROL TP53 -SNAI2 METABOLIC_CATALYSIS BBC3 -SNCA IN_SAME_COMPONENT BAD -SNCA IN_SAME_COMPONENT PARK7 -SNCA IN_SAME_COMPONENT PLCB2 -SNCA IN_SAME_COMPONENT PLD1 -SNCA IN_SAME_COMPONENT PLD2 -SNCA IN_SAME_COMPONENT PRKCD -SNCA IN_SAME_COMPONENT SLC6A3 -SNCA IN_SAME_COMPONENT SNCAIP -SNCA IN_SAME_COMPONENT STUB1 -SNCA IN_SAME_COMPONENT TOR1A -SNCAIP IN_SAME_COMPONENT SNCA -SNCAIP REACTS_WITH SNCA -SNCAIP REACTS_WITH SNCAIP -SNCA METABOLIC_CATALYSIS SNCA -SNCA REACTS_WITH BAD -SNCA REACTS_WITH PARK7 -SNCA REACTS_WITH PLCB2 -SNCA REACTS_WITH PLD1 -SNCA REACTS_WITH PLD2 -SNCA REACTS_WITH PRKCD -SNCA REACTS_WITH SLC6A3 -SNCA REACTS_WITH SNCA -SNCA REACTS_WITH SNCAIP -SNCA REACTS_WITH STUB1 -SNCA REACTS_WITH TOR1A -SNCA STATE_CHANGE PPP2R5D -SNCA STATE_CHANGE SNCA -SNCA STATE_CHANGE SNCAIP -SND1 IN_SAME_COMPONENT MYB -SND1 IN_SAME_COMPONENT PIM1 -SND1 METABOLIC_CATALYSIS LECT2 -SND1 REACTS_WITH MYB -SND1 REACTS_WITH PIM1 -SND1 REACTS_WITH SND1 -SNIP1 CO_CONTROL CITED1 -SNIP1 STATE_CHANGE SMAD2 -SNIP1 STATE_CHANGE SMAD4 -SNTA1 IN_SAME_COMPONENT MAPK12 -SNTA1 REACTS_WITH MAPK12 -SNTA1 REACTS_WITH SNTA1 -SNURF IN_SAME_COMPONENT AR -SNURF REACTS_WITH AR -SNURF REACTS_WITH SNURF -SNX1 CO_CONTROL SNX1 -SNX1 CO_CONTROL SNX2 -SNX1 IN_SAME_COMPONENT SNX2 -SNX1 STATE_CHANGE CDH1 -SNX1 STATE_CHANGE CTNNB1 -SNX1 STATE_CHANGE CTNND1 -SNX1 STATE_CHANGE F2R -SNX2 CO_CONTROL SNX1 -SNX2 IN_SAME_COMPONENT SNX1 -SNX2 STATE_CHANGE F2R -SOCS1 IN_SAME_COMPONENT IFNG -SOCS1 IN_SAME_COMPONENT IFNGR1 -SOCS1 IN_SAME_COMPONENT IL12A -SOCS1 IN_SAME_COMPONENT IL12B -SOCS1 IN_SAME_COMPONENT IL12RB1 -SOCS1 IN_SAME_COMPONENT IL12RB2 -SOCS1 IN_SAME_COMPONENT IL2RB -SOCS1 IN_SAME_COMPONENT IL2RG -SOCS1 IN_SAME_COMPONENT JAK1 -SOCS1 IN_SAME_COMPONENT JAK2 -SOCS1 IN_SAME_COMPONENT JAK3 -SOCS1 IN_SAME_COMPONENT LCK -SOCS1 IN_SAME_COMPONENT TYK2 -SOCS1 IN_SAME_COMPONENT VAV1 -SOCS1 REACTS_WITH IFNG -SOCS1 REACTS_WITH IFNGR1 -SOCS1 REACTS_WITH IL12A -SOCS1 REACTS_WITH IL12B -SOCS1 REACTS_WITH IL12RB1 -SOCS1 REACTS_WITH IL12RB2 -SOCS1 REACTS_WITH JAK1 -SOCS1 REACTS_WITH JAK2 -SOCS1 REACTS_WITH SOCS1 -SOCS1 REACTS_WITH TYK2 -SOCS1 REACTS_WITH VAV1 -SOCS1 STATE_CHANGE HRAS -SOCS1 STATE_CHANGE IL13RA1 -SOCS1 STATE_CHANGE IL2 -SOCS1 STATE_CHANGE IL2RA -SOCS1 STATE_CHANGE IL2RB -SOCS1 STATE_CHANGE IL2RG -SOCS1 STATE_CHANGE IL4 -SOCS1 STATE_CHANGE IL4R -SOCS1 STATE_CHANGE JAK1 -SOCS1 STATE_CHANGE JAK2 -SOCS1 STATE_CHANGE JAK3 -SOCS1 STATE_CHANGE LCK -SOCS2 IN_SAME_COMPONENT IL2RB -SOCS2 IN_SAME_COMPONENT JAK1 -SOCS2 IN_SAME_COMPONENT LCK -SOCS2 IN_SAME_COMPONENT SOCS3 -SOCS2 REACTS_WITH IL2RB -SOCS2 REACTS_WITH JAK1 -SOCS2 REACTS_WITH LCK -SOCS2 REACTS_WITH SOCS2 -SOCS2 REACTS_WITH SOCS3 -SOCS3 CO_CONTROL IL6 -SOCS3 CO_CONTROL IL6R -SOCS3 CO_CONTROL IL6ST -SOCS3 CO_CONTROL JAK1 -SOCS3 CO_CONTROL PRKCD -SOCS3 IN_SAME_COMPONENT EPO -SOCS3 IN_SAME_COMPONENT EPOR -SOCS3 IN_SAME_COMPONENT IL12B -SOCS3 IN_SAME_COMPONENT IL12RB1 -SOCS3 IN_SAME_COMPONENT IL23A -SOCS3 IN_SAME_COMPONENT IL23R -SOCS3 IN_SAME_COMPONENT IL2RB -SOCS3 IN_SAME_COMPONENT IL6 -SOCS3 IN_SAME_COMPONENT IL6R -SOCS3 IN_SAME_COMPONENT IL6ST -SOCS3 IN_SAME_COMPONENT JAK1 -SOCS3 IN_SAME_COMPONENT JAK2 -SOCS3 IN_SAME_COMPONENT LCK -SOCS3 IN_SAME_COMPONENT RASA1 -SOCS3 IN_SAME_COMPONENT SOCS2 -SOCS3 IN_SAME_COMPONENT TYK2 -SOCS3 REACTS_WITH EPO -SOCS3 REACTS_WITH EPOR -SOCS3 REACTS_WITH IL12B -SOCS3 REACTS_WITH IL12RB1 -SOCS3 REACTS_WITH IL23A -SOCS3 REACTS_WITH IL23R -SOCS3 REACTS_WITH IL2RB -SOCS3 REACTS_WITH IL6 -SOCS3 REACTS_WITH IL6R -SOCS3 REACTS_WITH IL6ST -SOCS3 REACTS_WITH JAK1 -SOCS3 REACTS_WITH JAK2 -SOCS3 REACTS_WITH LCK -SOCS3 REACTS_WITH RASA1 -SOCS3 REACTS_WITH SOCS2 -SOCS3 REACTS_WITH SOCS3 -SOCS3 REACTS_WITH TYK2 -SOCS3 STATE_CHANGE IKZF3 -SOCS3 STATE_CHANGE IL2 -SOCS3 STATE_CHANGE IL2RA -SOCS3 STATE_CHANGE IL2RB -SOCS3 STATE_CHANGE IL2RG -SOCS3 STATE_CHANGE JAK1 -SOCS3 STATE_CHANGE JAK2 -SOCS3 STATE_CHANGE JAK3 -SOCS3 STATE_CHANGE LCK -SOCS3 STATE_CHANGE LEP -SOCS3 STATE_CHANGE LEPR -SOCS3 STATE_CHANGE PTPN11 -SOCS3 STATE_CHANGE STAT1 -SOCS3 STATE_CHANGE STAT3 -SOCS5 STATE_CHANGE IL2RG -SOCS5 STATE_CHANGE IL4 -SOCS5 STATE_CHANGE IL4R -SOCS5 STATE_CHANGE JAK1 -SOCS5 STATE_CHANGE JAK3 -SORBS1 IN_SAME_COMPONENT CBL -SORBS1 IN_SAME_COMPONENT RAPGEF1 -SORBS1 IN_SAME_COMPONENT SH2B2 -SORBS1 REACTS_WITH CBL -SORBS1 REACTS_WITH RAPGEF1 -SORBS1 REACTS_WITH SH2B2 -SORBS1 REACTS_WITH SORBS1 -SORBS1 STATE_CHANGE RHOQ -SORT1 IN_SAME_COMPONENT BDNF -SORT1 IN_SAME_COMPONENT MAGED1 -SORT1 IN_SAME_COMPONENT MAGEH1 -SORT1 IN_SAME_COMPONENT NDN -SORT1 IN_SAME_COMPONENT NDNL2 -SORT1 IN_SAME_COMPONENT NGF -SORT1 IN_SAME_COMPONENT NGFR -SORT1 IN_SAME_COMPONENT NGFRAP1 -SORT1 IN_SAME_COMPONENT TRAF6 -SORT1 IN_SAME_COMPONENT YWHAE -SORT1 IN_SAME_COMPONENT ZNF274 -SORT1 REACTS_WITH BDNF -SORT1 REACTS_WITH E2F1 -SORT1 REACTS_WITH MAGED1 -SORT1 REACTS_WITH MAGEH1 -SORT1 REACTS_WITH NDN -SORT1 REACTS_WITH NDNL2 -SORT1 REACTS_WITH NGF -SORT1 REACTS_WITH NGFR -SORT1 REACTS_WITH NGFRAP1 -SORT1 REACTS_WITH SORT1 -SORT1 REACTS_WITH TRAF6 -SORT1 REACTS_WITH YWHAE -SORT1 REACTS_WITH ZNF274 -SORT1 STATE_CHANGE CASP6 -SORT1 STATE_CHANGE CYCS -SORT1 STATE_CHANGE PRDM4 -SORT1 STATE_CHANGE SMPD2 -SORT1 STATE_CHANGE TP53 -SOS1 CO_CONTROL DOK1 -SOS1 CO_CONTROL FOXO1 -SOS1 CO_CONTROL GAB2 -SOS1 CO_CONTROL GRB10 -SOS1 CO_CONTROL IL17RD -SOS1 CO_CONTROL INPP5D -SOS1 CO_CONTROL INS -SOS1 CO_CONTROL INSR -SOS1 CO_CONTROL RASA1 -SOS1 CO_CONTROL SHC1 -SOS1 CO_CONTROL STAT3 -SOS1 IN_SAME_COMPONENT ABI1 -SOS1 IN_SAME_COMPONENT CBL -SOS1 IN_SAME_COMPONENT CSF2 -SOS1 IN_SAME_COMPONENT CSF2RA -SOS1 IN_SAME_COMPONENT CSF2RB -SOS1 IN_SAME_COMPONENT EGF -SOS1 IN_SAME_COMPONENT EGFR -SOS1 IN_SAME_COMPONENT EPS8 -SOS1 IN_SAME_COMPONENT ERBB2 -SOS1 IN_SAME_COMPONENT ERBB3 -SOS1 IN_SAME_COMPONENT ESR1 -SOS1 IN_SAME_COMPONENT FRS2 -SOS1 IN_SAME_COMPONENT GAB1 -SOS1 IN_SAME_COMPONENT GAB2 -SOS1 IN_SAME_COMPONENT GDNF -SOS1 IN_SAME_COMPONENT GFRA1 -SOS1 IN_SAME_COMPONENT HGF -SOS1 IN_SAME_COMPONENT IGF1 -SOS1 IN_SAME_COMPONENT IGF1R -SOS1 IN_SAME_COMPONENT IL2 -SOS1 IN_SAME_COMPONENT IL2RA -SOS1 IN_SAME_COMPONENT IL2RB -SOS1 IN_SAME_COMPONENT IL2RG -SOS1 IN_SAME_COMPONENT INS -SOS1 IN_SAME_COMPONENT INSR -SOS1 IN_SAME_COMPONENT IRS1 -SOS1 IN_SAME_COMPONENT JAK1 -SOS1 IN_SAME_COMPONENT JAK2 -SOS1 IN_SAME_COMPONENT JAK3 -SOS1 IN_SAME_COMPONENT LCK -SOS1 IN_SAME_COMPONENT MET -SOS1 IN_SAME_COMPONENT PDGFB -SOS1 IN_SAME_COMPONENT PDGFRB -SOS1 IN_SAME_COMPONENT PELP1 -SOS1 IN_SAME_COMPONENT PIK3CA -SOS1 IN_SAME_COMPONENT PIK3R1 -SOS1 IN_SAME_COMPONENT PTPN11 -SOS1 IN_SAME_COMPONENT RANBP9 -SOS1 IN_SAME_COMPONENT SDC2 -SOS1 IN_SAME_COMPONENT SHC1 -SOS1 IN_SAME_COMPONENT SRC -SOS1 METABOLIC_CATALYSIS A2M -SOS1 METABOLIC_CATALYSIS CCND3 -SOS1 REACTS_WITH ABI1 -SOS1 REACTS_WITH CBL -SOS1 REACTS_WITH CSF2 -SOS1 REACTS_WITH CSF2RA -SOS1 REACTS_WITH CSF2RB -SOS1 REACTS_WITH EGF -SOS1 REACTS_WITH EGFR -SOS1 REACTS_WITH EPS8 -SOS1 REACTS_WITH ERBB2 -SOS1 REACTS_WITH ERBB3 -SOS1 REACTS_WITH ESR1 -SOS1 REACTS_WITH FRS2 -SOS1 REACTS_WITH GAB1 -SOS1 REACTS_WITH GAB2 -SOS1 REACTS_WITH GDNF -SOS1 REACTS_WITH GFRA1 -SOS1 REACTS_WITH HGF -SOS1 REACTS_WITH IGF1 -SOS1 REACTS_WITH IGF1R -SOS1 REACTS_WITH IL2 -SOS1 REACTS_WITH IL2RA -SOS1 REACTS_WITH IL2RB -SOS1 REACTS_WITH IL2RG -SOS1 REACTS_WITH INS -SOS1 REACTS_WITH INSR -SOS1 REACTS_WITH IRS1 -SOS1 REACTS_WITH JAK1 -SOS1 REACTS_WITH JAK2 -SOS1 REACTS_WITH JAK3 -SOS1 REACTS_WITH LCK -SOS1 REACTS_WITH MET -SOS1 REACTS_WITH PDGFB -SOS1 REACTS_WITH PDGFRB -SOS1 REACTS_WITH PELP1 -SOS1 REACTS_WITH PIK3CA -SOS1 REACTS_WITH PIK3R1 -SOS1 REACTS_WITH PTPN11 -SOS1 REACTS_WITH RANBP10 -SOS1 REACTS_WITH RANBP9 -SOS1 REACTS_WITH SDC2 -SOS1 REACTS_WITH SHC1 -SOS1 REACTS_WITH SOS1 -SOS1 REACTS_WITH SPRY2 -SOS1 REACTS_WITH SRC -SOS1 REACTS_WITH USP6NL -SOS1 STATE_CHANGE AKT1 -SOS1 STATE_CHANGE CREB1 -SOS1 STATE_CHANGE DOK1 -SOS1 STATE_CHANGE HRAS -SOS1 STATE_CHANGE IKZF3 -SOS1 STATE_CHANGE MAP2K1 -SOS1 STATE_CHANGE MTOR -SOS1 STATE_CHANGE PRKCD -SOS1 STATE_CHANGE PRKCZ -SOS1 STATE_CHANGE PRKD1 -SOS1 STATE_CHANGE RAC1 -SOS1 STATE_CHANGE RRAS -SOS1 STATE_CHANGE SGMS1 -SOS1 STATE_CHANGE SMPD1 -SOS1 STATE_CHANGE UGCG -SOSTDC1 IN_SAME_COMPONENT BMP7 -SOSTDC1 REACTS_WITH BAMBI -SOSTDC1 REACTS_WITH BMP7 -SOSTDC1 REACTS_WITH BMPR2 -SOSTDC1 REACTS_WITH SOSTDC1 -SP1 CO_CONTROL ARNT -SP1 CO_CONTROL CREB1 -SP1 CO_CONTROL E2F1 -SP1 CO_CONTROL E2F4 -SP1 CO_CONTROL E2F6 -SP1 CO_CONTROL ESR1 -SP1 CO_CONTROL FOS -SP1 CO_CONTROL FOXA1 -SP1 CO_CONTROL FOXA2 -SP1 CO_CONTROL HBP1 -SP1 CO_CONTROL HDAC1 -SP1 CO_CONTROL HIF1A -SP1 CO_CONTROL HNF1A -SP1 CO_CONTROL JMY -SP1 CO_CONTROL JUN -SP1 CO_CONTROL MAX -SP1 CO_CONTROL MYC -SP1 CO_CONTROL NR2F2 -SP1 CO_CONTROL POU2F1 -SP1 CO_CONTROL POU4F1 -SP1 CO_CONTROL POU4F2 -SP1 CO_CONTROL SIRT1 -SP1 CO_CONTROL SMAD4 -SP1 CO_CONTROL SNAI2 -SP1 CO_CONTROL SP1 -SP1 CO_CONTROL STAT6 -SP1 CO_CONTROL TADA2B -SP1 CO_CONTROL TAF9 -SP1 CO_CONTROL TBP -SP1 CO_CONTROL TFDP1 -SP1 CO_CONTROL TFDP2 -SP1 CO_CONTROL TP53 -SP1 CO_CONTROL ZBTB17 -SP1 IN_SAME_COMPONENT ARNT -SP1 IN_SAME_COMPONENT EP300 -SP1 IN_SAME_COMPONENT FOSL1 -SP1 IN_SAME_COMPONENT HDAC2 -SP1 IN_SAME_COMPONENT HIF1A -SP1 IN_SAME_COMPONENT JUNB -SP1 IN_SAME_COMPONENT JUND -SP1 IN_SAME_COMPONENT SMAD4 -SP1 IN_SAME_COMPONENT TP53 -SP1 IN_SAME_COMPONENT ZBTB17 -SP1 METABOLIC_CATALYSIS ABCB1 -SP1 METABOLIC_CATALYSIS APC -SP1 METABOLIC_CATALYSIS APOB -SP1 METABOLIC_CATALYSIS BAX -SP1 METABOLIC_CATALYSIS BBC3 -SP1 METABOLIC_CATALYSIS CAV1 -SP1 METABOLIC_CATALYSIS CCNB1 -SP1 METABOLIC_CATALYSIS CCND2 -SP1 METABOLIC_CATALYSIS CDKN1A -SP1 METABOLIC_CATALYSIS CDKN2B -SP1 METABOLIC_CATALYSIS CDKN2C -SP1 METABOLIC_CATALYSIS CEBPD -SP1 METABOLIC_CATALYSIS COL1A2 -SP1 METABOLIC_CATALYSIS DHFR -SP1 METABOLIC_CATALYSIS E2F1 -SP1 METABOLIC_CATALYSIS ENG -SP1 METABOLIC_CATALYSIS HMGCS2 -SP1 METABOLIC_CATALYSIS IVL -SP1 METABOLIC_CATALYSIS MAT2A -SP1 METABOLIC_CATALYSIS MMP14 -SP1 METABOLIC_CATALYSIS MT2A -SP1 METABOLIC_CATALYSIS MYC -SP1 METABOLIC_CATALYSIS PDX1 -SP1 METABOLIC_CATALYSIS RANBP1 -SP1 METABOLIC_CATALYSIS SMAD7 -SP1 METABOLIC_CATALYSIS TERT -SP1 METABOLIC_CATALYSIS TK1 -SP1 REACTS_WITH ARNT -SP1 REACTS_WITH EP300 -SP1 REACTS_WITH FOSL1 -SP1 REACTS_WITH HIF1A -SP1 REACTS_WITH JUNB -SP1 REACTS_WITH JUND -SP1 REACTS_WITH SMAD4 -SP1 REACTS_WITH SP1 -SP1 REACTS_WITH TP53 -SP1 REACTS_WITH ZBTB17 -SP3 IN_SAME_COMPONENT HDAC2 -SP3 METABOLIC_CATALYSIS TERT -SPAG9 METABOLIC_CATALYSIS KLC1 -SPAG9 REACTS_WITH KLC1 -SPAG9 REACTS_WITH SPAG9 -SPAG9 STATE_CHANGE SPAG9 -SPATA13 IN_SAME_COMPONENT APC -SPATA13 STATE_CHANGE CDC42 -SPATA13 STATE_CHANGE RAC1 -SPC24 IN_SAME_COMPONENT NDC80 -SPDEF CO_CONTROL AR -SPDEF METABOLIC_CATALYSIS KLK3 -SPEN CO_CONTROL EP300 -SPEN CO_CONTROL NOTCH1 -SPEN CO_CONTROL RBPJ -SPEN IN_SAME_COMPONENT CTBP1 -SPEN IN_SAME_COMPONENT KDM1A -SPEN IN_SAME_COMPONENT RBBP8 -SPEN IN_SAME_COMPONENT RBPJ -SPEN METABOLIC_CATALYSIS HES1 -SPEN METABOLIC_CATALYSIS HEY1 -SPEN REACTS_WITH CTBP1 -SPEN REACTS_WITH EP300 -SPEN REACTS_WITH KDM1A -SPEN REACTS_WITH NOTCH1 -SPEN REACTS_WITH RBBP8 -SPEN REACTS_WITH RBPJ -SPEN REACTS_WITH SPEN -SPHK1 IN_SAME_COMPONENT ITGAV -SPHK1 IN_SAME_COMPONENT ITGB3 -SPHK1 IN_SAME_COMPONENT PECAM1 -SPHK1 REACTS_WITH ITGAV -SPHK1 REACTS_WITH ITGB3 -SPHK1 REACTS_WITH PECAM1 -SPHK1 REACTS_WITH SPHK1 -SPHK2 IN_SAME_COMPONENT IL12A -SPHK2 IN_SAME_COMPONENT IL12B -SPHK2 IN_SAME_COMPONENT IL12RB1 -SPHK2 IN_SAME_COMPONENT IL12RB2 -SPHK2 IN_SAME_COMPONENT JAK2 -SPHK2 IN_SAME_COMPONENT TYK2 -SPHK2 REACTS_WITH IL12A -SPHK2 REACTS_WITH IL12B -SPHK2 REACTS_WITH IL12RB1 -SPHK2 REACTS_WITH IL12RB2 -SPHK2 REACTS_WITH JAK2 -SPHK2 REACTS_WITH SPHK2 -SPHK2 REACTS_WITH TYK2 -SPHK2 STATE_CHANGE STAT4 -SPI1 CO_CONTROL CEBPB -SPI1 CO_CONTROL IRF8 -SPI1 CO_CONTROL STAT6 -SPI1 CO_CONTROL ZBTB17 -SPI1 IN_SAME_COMPONENT GSC -SPI1 IN_SAME_COMPONENT RB1 -SPI1 IN_SAME_COMPONENT TBP -SPI1 IN_SAME_COMPONENT TFDP1 -SPI1 METABOLIC_CATALYSIS ARG1 -SPI1 METABOLIC_CATALYSIS CSF1R -SPI1 METABOLIC_CATALYSIS ELANE -SPI1 METABOLIC_CATALYSIS LYZ -SPI1 METABOLIC_CATALYSIS PRTN3 -SPI1 METABOLIC_CATALYSIS SLC11A1 -SPI1 REACTS_WITH GSC -SPI1 REACTS_WITH RB1 -SPI1 REACTS_WITH SPI1 -SPI1 REACTS_WITH TBP -SPI1 REACTS_WITH TFDP1 -SPON2 IN_SAME_COMPONENT ITGAM -SPON2 IN_SAME_COMPONENT ITGB2 -SPON2 REACTS_WITH ITGAM -SPON2 REACTS_WITH ITGB2 -SPON2 REACTS_WITH SPON2 -SPOP IN_SAME_COMPONENT GLI2 -SPOP IN_SAME_COMPONENT GLI3 -SPOP REACTS_WITH GLI2 -SPOP REACTS_WITH GLI3 -SPOP REACTS_WITH SPOP -SPP1 CO_CONTROL SYK -SPP1 IN_SAME_COMPONENT ITGA4 -SPP1 IN_SAME_COMPONENT ITGA8 -SPP1 IN_SAME_COMPONENT ITGA9 -SPP1 IN_SAME_COMPONENT ITGAV -SPP1 IN_SAME_COMPONENT ITGB1 -SPP1 IN_SAME_COMPONENT ITGB3 -SPP1 METABOLIC_CATALYSIS ILK -SPP1 REACTS_WITH ITGA4 -SPP1 REACTS_WITH ITGA8 -SPP1 REACTS_WITH ITGA9 -SPP1 REACTS_WITH ITGAV -SPP1 REACTS_WITH ITGB1 -SPP1 REACTS_WITH ITGB3 -SPP1 REACTS_WITH SPP1 -SPP1 STATE_CHANGE BCAR1 -SPP1 STATE_CHANGE MAP3K1 -SPP1 STATE_CHANGE MAP3K14 -SPP1 STATE_CHANGE PTK2B -SPP1 STATE_CHANGE SYK -SPRED1 IN_SAME_COMPONENT HRAS -SPRED1 REACTS_WITH HRAS -SPRED1 REACTS_WITH SPRED1 -SPRED2 IN_SAME_COMPONENT HRAS -SPRED2 REACTS_WITH HRAS -SPRED2 REACTS_WITH SPRED2 -SPRY2 IN_SAME_COMPONENT CBL -SPRY2 IN_SAME_COMPONENT FRS2 -SPRY2 IN_SAME_COMPONENT SDC2 -SPRY2 REACTS_WITH CBL -SPRY2 REACTS_WITH FRS2 -SPRY2 REACTS_WITH SDC2 -SPRY2 REACTS_WITH SHC1 -SPRY2 REACTS_WITH SOS1 -SPRY2 REACTS_WITH SPRY2 -SPRY2 STATE_CHANGE PTPN1 -SPTBN1 REACTS_WITH SPTBN1 -SQSTM1 IN_SAME_COMPONENT IRAK1 -SQSTM1 IN_SAME_COMPONENT NGF -SQSTM1 IN_SAME_COMPONENT NGFR -SQSTM1 IN_SAME_COMPONENT RIPK1 -SQSTM1 IN_SAME_COMPONENT RIPK2 -SQSTM1 IN_SAME_COMPONENT TNF -SQSTM1 IN_SAME_COMPONENT TNFRSF1A -SQSTM1 IN_SAME_COMPONENT TRADD -SQSTM1 IN_SAME_COMPONENT TRAF2 -SQSTM1 IN_SAME_COMPONENT TRAF6 -SQSTM1 REACTS_WITH IRAK1 -SQSTM1 REACTS_WITH NGF -SQSTM1 REACTS_WITH NGFR -SQSTM1 REACTS_WITH RIPK1 -SQSTM1 REACTS_WITH RIPK2 -SQSTM1 REACTS_WITH SQSTM1 -SQSTM1 REACTS_WITH TNF -SQSTM1 REACTS_WITH TNFRSF1A -SQSTM1 REACTS_WITH TRADD -SQSTM1 REACTS_WITH TRAF2 -SQSTM1 REACTS_WITH TRAF6 -SQSTM1 STATE_CHANGE CHUK -SQSTM1 STATE_CHANGE ERC1 -SQSTM1 STATE_CHANGE IKBKB -SQSTM1 STATE_CHANGE IKBKG -SQSTM1 STATE_CHANGE NFKB1 -SQSTM1 STATE_CHANGE RELA -SRC CO_CONTROL AR -SRC CO_CONTROL ATR -SRC CO_CONTROL CARM1 -SRC CO_CONTROL CXCR4 -SRC CO_CONTROL FYN -SRC CO_CONTROL GAB1 -SRC CO_CONTROL HGF -SRC CO_CONTROL JAK2 -SRC CO_CONTROL MET -SRC CO_CONTROL NCOA2 -SRC CO_CONTROL PIK3CA -SRC CO_CONTROL PIK3R1 -SRC CO_CONTROL PLCG1 -SRC CO_CONTROL PTPN11 -SRC CO_CONTROL STAT3 -SRC IN_SAME_COMPONENT AR -SRC IN_SAME_COMPONENT BCAR1 -SRC IN_SAME_COMPONENT CRK -SRC IN_SAME_COMPONENT CTTN -SRC IN_SAME_COMPONENT EFNA1 -SRC IN_SAME_COMPONENT EPHA2 -SRC IN_SAME_COMPONENT EPHB1 -SRC IN_SAME_COMPONENT ESR1 -SRC IN_SAME_COMPONENT FAS -SRC IN_SAME_COMPONENT FASLG -SRC IN_SAME_COMPONENT HSP90AA1 -SRC IN_SAME_COMPONENT KDR -SRC IN_SAME_COMPONENT PDPK1 -SRC IN_SAME_COMPONENT PELP1 -SRC IN_SAME_COMPONENT PIK3CA -SRC IN_SAME_COMPONENT PIK3R1 -SRC IN_SAME_COMPONENT PTK2B -SRC IN_SAME_COMPONENT PTPN21 -SRC IN_SAME_COMPONENT PXN -SRC IN_SAME_COMPONENT RASA1 -SRC IN_SAME_COMPONENT SDC2 -SRC IN_SAME_COMPONENT SDC3 -SRC IN_SAME_COMPONENT SHB -SRC IN_SAME_COMPONENT SOS1 -SRC IN_SAME_COMPONENT SYK -SRC IN_SAME_COMPONENT VEGFA -SRC METABOLIC_CATALYSIS KLK2 -SRC METABOLIC_CATALYSIS KLK3 -SRC REACTS_WITH AR -SRC REACTS_WITH BCAR1 -SRC REACTS_WITH CRK -SRC REACTS_WITH CTTN -SRC REACTS_WITH EFNA1 -SRC REACTS_WITH EPHA2 -SRC REACTS_WITH EPHB1 -SRC REACTS_WITH ESR1 -SRC REACTS_WITH FAS -SRC REACTS_WITH FASLG -SRC REACTS_WITH KDR -SRC REACTS_WITH PELP1 -SRC REACTS_WITH PIK3CA -SRC REACTS_WITH PIK3R1 -SRC REACTS_WITH PTK2B -SRC REACTS_WITH PTPN21 -SRC REACTS_WITH PXN -SRC REACTS_WITH RASA1 -SRC REACTS_WITH SDC2 -SRC REACTS_WITH SDC3 -SRC REACTS_WITH SHB -SRC REACTS_WITH SOS1 -SRC REACTS_WITH SRC -SRC REACTS_WITH SYK -SRC REACTS_WITH VEGFA -SRC STATE_CHANGE AKT1 -SRC STATE_CHANGE BCAR1 -SRC STATE_CHANGE CAV1 -SRC STATE_CHANGE CDH1 -SRC STATE_CHANGE CRK -SRC STATE_CHANGE CTNNA1 -SRC STATE_CHANGE CTNNB1 -SRC STATE_CHANGE CTNND1 -SRC STATE_CHANGE DOK6 -SRC STATE_CHANGE EGFR -SRC STATE_CHANGE F2RL2 -SRC STATE_CHANGE FARP2 -SRC STATE_CHANGE FRS2 -SRC STATE_CHANGE GAB1 -SRC STATE_CHANGE GDNF -SRC STATE_CHANGE GFRA1 -SRC STATE_CHANGE HGF -SRC STATE_CHANGE HGS -SRC STATE_CHANGE HRAS -SRC STATE_CHANGE HSP90AB1 -SRC STATE_CHANGE IGF1 -SRC STATE_CHANGE IGF1R -SRC STATE_CHANGE IQGAP1 -SRC STATE_CHANGE JAK2 -SRC STATE_CHANGE JUP -SRC STATE_CHANGE MAP2K1 -SRC STATE_CHANGE MAP3K2 -SRC STATE_CHANGE MAPK8 -SRC STATE_CHANGE MET -SRC STATE_CHANGE MMP2 -SRC STATE_CHANGE MMP9 -SRC STATE_CHANGE NFKB1 -SRC STATE_CHANGE NFKBIA -SRC STATE_CHANGE NOS2 -SRC STATE_CHANGE NUMB -SRC STATE_CHANGE PARD6A -SRC STATE_CHANGE PIK3CA -SRC STATE_CHANGE PIK3R1 -SRC STATE_CHANGE PTP4A1 -SRC STATE_CHANGE PXN -SRC STATE_CHANGE RAB5A -SRC STATE_CHANGE RELA -SRC STATE_CHANGE SDC2 -SRC STATE_CHANGE SGK1 -SRC STATE_CHANGE SH2D2A -SRC STATE_CHANGE SPRY2 -SRC STATE_CHANGE STAT3 -SRC STATE_CHANGE STAT5A -SRC STATE_CHANGE TIAM1 -SRC STATE_CHANGE TRIP6 -SRC STATE_CHANGE TRPV1 -SRC STATE_CHANGE VAV2 -SRF CO_CONTROL AR -SRF CO_CONTROL CREB1 -SRF CO_CONTROL ELK1 -SRF CO_CONTROL MYOCD -SRF CO_CONTROL SRF -SRF IN_SAME_COMPONENT ELK1 -SRF IN_SAME_COMPONENT HDAC4 -SRF IN_SAME_COMPONENT MYOCD -SRF IN_SAME_COMPONENT SCAI -SRF METABOLIC_CATALYSIS ACTA2 -SRF METABOLIC_CATALYSIS CYR61 -SRF METABOLIC_CATALYSIS FHL2 -SRF METABOLIC_CATALYSIS FOS -SRF METABOLIC_CATALYSIS ITGB1 -SRF METABOLIC_CATALYSIS SRF -SRF METABOLIC_CATALYSIS TAGLN -SRF METABOLIC_CATALYSIS VCL -SRF REACTS_WITH ELK1 -SRF REACTS_WITH HDAC4 -SRF REACTS_WITH MYOCD -SRF REACTS_WITH SCAI -SRF REACTS_WITH SRF -SRGAP1 STATE_CHANGE RHOA -SRY CO_CONTROL AR -SRY METABOLIC_CATALYSIS KLK3 -SSH1 IN_SAME_COMPONENT FGF1 -SSH1 REACTS_WITH FGF1 -SSH1 REACTS_WITH PAK4 -SSH1 STATE_CHANGE CFL1 -SSRP1 METABOLIC_CATALYSIS CDKN1A -SSRP1 METABOLIC_CATALYSIS MDM2 -SSRP1 REACTS_WITH SSRP1 -STAG2 REACTS_WITH STAG2 -STAMBP STATE_CHANGE EGF -STAMBP STATE_CHANGE EGFR -STAP1 IN_SAME_COMPONENT STAT5A -STAP1 REACTS_WITH STAP1 -STAP1 REACTS_WITH STAT5A -STAT1 CO_CONTROL IL6 -STAT1 CO_CONTROL TGFB1 -STAT1 IN_SAME_COMPONENT PIAS1 -STAT1 IN_SAME_COMPONENT PIAS4 -STAT1 IN_SAME_COMPONENT PTPN11 -STAT1 IN_SAME_COMPONENT STAT3 -STAT1 IN_SAME_COMPONENT TNF -STAT1 IN_SAME_COMPONENT TNFRSF1A -STAT1 IN_SAME_COMPONENT TRADD -STAT1 METABOLIC_CATALYSIS BCL2 -STAT1 METABOLIC_CATALYSIS BCL2L1 -STAT1 METABOLIC_CATALYSIS CASP1 -STAT1 METABOLIC_CATALYSIS EPOR -STAT1 METABOLIC_CATALYSIS GATA3 -STAT1 METABOLIC_CATALYSIS IL12RB2 -STAT1 METABOLIC_CATALYSIS IL17A -STAT1 METABOLIC_CATALYSIS IRF1 -STAT1 METABOLIC_CATALYSIS KIT -STAT1 METABOLIC_CATALYSIS SMAD7 -STAT1 METABOLIC_CATALYSIS SOCS1 -STAT1 METABOLIC_CATALYSIS TBX21 -STAT1 REACTS_WITH PIAS1 -STAT1 REACTS_WITH PIAS4 -STAT1 REACTS_WITH PTPN11 -STAT1 REACTS_WITH RIPK1 -STAT1 REACTS_WITH STAT1 -STAT1 REACTS_WITH STAT3 -STAT1 REACTS_WITH TNF -STAT1 REACTS_WITH TNFRSF1A -STAT1 REACTS_WITH TRADD -STAT1 REACTS_WITH TRAF2 -STAT1 STATE_CHANGE FADD -STAT1 STATE_CHANGE TNF -STAT1 STATE_CHANGE TNFRSF1A -STAT1 STATE_CHANGE TRADD -STAT1 STATE_CHANGE TRAF2 -STAT2 REACTS_WITH STAT2 -STAT3 CO_CONTROL ATR -STAT3 CO_CONTROL CEBPB -STAT3 CO_CONTROL FOS -STAT3 CO_CONTROL JUN -STAT3 CO_CONTROL PTPN11 -STAT3 CO_CONTROL SOS1 -STAT3 CO_CONTROL SRC -STAT3 CO_CONTROL STAT4 -STAT3 CO_CONTROL TBX21 -STAT3 IN_SAME_COMPONENT FOXO1 -STAT3 IN_SAME_COMPONENT HDAC3 -STAT3 IN_SAME_COMPONENT PIAS3 -STAT3 IN_SAME_COMPONENT STAT1 -STAT3 IN_SAME_COMPONENT STAT4 -STAT3 METABOLIC_CATALYSIS A2M -STAT3 METABOLIC_CATALYSIS CCND1 -STAT3 METABOLIC_CATALYSIS CEBPD -STAT3 METABOLIC_CATALYSIS CRP -STAT3 METABOLIC_CATALYSIS FGG -STAT3 METABOLIC_CATALYSIS HSP90B1 -STAT3 METABOLIC_CATALYSIS IFNG -STAT3 METABOLIC_CATALYSIS IL17A -STAT3 METABOLIC_CATALYSIS IL17F -STAT3 METABOLIC_CATALYSIS IRF1 -STAT3 METABOLIC_CATALYSIS JUNB -STAT3 METABOLIC_CATALYSIS LBP -STAT3 METABOLIC_CATALYSIS MYC -STAT3 METABOLIC_CATALYSIS SOCS3 -STAT3 METABOLIC_CATALYSIS TIMP1 -STAT3 METABOLIC_CATALYSIS TNFSF11 -STAT3 REACTS_WITH FOXO1 -STAT3 REACTS_WITH HDAC3 -STAT3 REACTS_WITH MITF -STAT3 REACTS_WITH PIAS3 -STAT3 REACTS_WITH STAT1 -STAT3 REACTS_WITH STAT3 -STAT3 REACTS_WITH STAT4 -STAT4 CO_CONTROL CD247 -STAT4 CO_CONTROL CD28 -STAT4 CO_CONTROL CD3D -STAT4 CO_CONTROL CD3E -STAT4 CO_CONTROL CD3G -STAT4 CO_CONTROL CD4 -STAT4 CO_CONTROL FOS -STAT4 CO_CONTROL HLA-DRA -STAT4 CO_CONTROL HLA-DRB1 -STAT4 CO_CONTROL IL18 -STAT4 CO_CONTROL IL18R1 -STAT4 CO_CONTROL IL18RAP -STAT4 CO_CONTROL IL2 -STAT4 CO_CONTROL JUN -STAT4 CO_CONTROL STAT3 -STAT4 CO_CONTROL TBX21 -STAT4 CO_CONTROL TGFB1 -STAT4 IN_SAME_COMPONENT CREBBP -STAT4 IN_SAME_COMPONENT JUN -STAT4 IN_SAME_COMPONENT PIAS2 -STAT4 IN_SAME_COMPONENT STAT3 -STAT4 METABOLIC_CATALYSIS ETV5 -STAT4 METABOLIC_CATALYSIS IFNG -STAT4 METABOLIC_CATALYSIS IL13 -STAT4 METABOLIC_CATALYSIS IL18R1 -STAT4 METABOLIC_CATALYSIS IL18RAP -STAT4 METABOLIC_CATALYSIS IL2 -STAT4 METABOLIC_CATALYSIS IL2RA -STAT4 METABOLIC_CATALYSIS IRF1 -STAT4 METABOLIC_CATALYSIS PRF1 -STAT4 REACTS_WITH CREBBP -STAT4 REACTS_WITH JUN -STAT4 REACTS_WITH PIAS2 -STAT4 REACTS_WITH STAT3 -STAT4 REACTS_WITH STAT4 -STAT4 STATE_CHANGE NFKB1 -STAT4 STATE_CHANGE RELA -STAT5A IN_SAME_COMPONENT STAP1 -STAT5A METABOLIC_CATALYSIS CDKN1A -STAT5A REACTS_WITH STAP1 -STAT5A REACTS_WITH STAT5A -STAT5B REACTS_WITH STAT5B -STAT6 CO_CONTROL BCL6 -STAT6 CO_CONTROL CEBPB -STAT6 CO_CONTROL EGR2 -STAT6 CO_CONTROL FES -STAT6 CO_CONTROL GTF3A -STAT6 CO_CONTROL HMGA1 -STAT6 CO_CONTROL IL2RG -STAT6 CO_CONTROL IL4 -STAT6 CO_CONTROL IL4R -STAT6 CO_CONTROL IRF4 -STAT6 CO_CONTROL IRS2 -STAT6 CO_CONTROL JAK1 -STAT6 CO_CONTROL JAK3 -STAT6 CO_CONTROL SP1 -STAT6 CO_CONTROL SPI1 -STAT6 IN_SAME_COMPONENT ETS1 -STAT6 IN_SAME_COMPONENT PARP14 -STAT6 METABOLIC_CATALYSIS AICDA -STAT6 METABOLIC_CATALYSIS ALOX15 -STAT6 METABOLIC_CATALYSIS ARG1 -STAT6 METABOLIC_CATALYSIS CCL11 -STAT6 METABOLIC_CATALYSIS CCL17 -STAT6 METABOLIC_CATALYSIS CCL26 -STAT6 METABOLIC_CATALYSIS COL1A1 -STAT6 METABOLIC_CATALYSIS COL1A2 -STAT6 METABOLIC_CATALYSIS EGR2 -STAT6 METABOLIC_CATALYSIS FCER2 -STAT6 METABOLIC_CATALYSIS IGHE -STAT6 METABOLIC_CATALYSIS IGHG1 -STAT6 METABOLIC_CATALYSIS IGHG3 -STAT6 METABOLIC_CATALYSIS IL10 -STAT6 METABOLIC_CATALYSIS IL13RA2 -STAT6 METABOLIC_CATALYSIS IL4 -STAT6 METABOLIC_CATALYSIS IL4R -STAT6 METABOLIC_CATALYSIS IL5 -STAT6 METABOLIC_CATALYSIS ITGB3 -STAT6 METABOLIC_CATALYSIS LTA -STAT6 METABOLIC_CATALYSIS OPRM1 -STAT6 METABOLIC_CATALYSIS PIGR -STAT6 METABOLIC_CATALYSIS RETNLB -STAT6 METABOLIC_CATALYSIS SELP -STAT6 METABOLIC_CATALYSIS SOCS1 -STAT6 METABOLIC_CATALYSIS TFF3 -STAT6 METABOLIC_CATALYSIS THY1 -STAT6 REACTS_WITH ETS1 -STAT6 REACTS_WITH STAT6 -STIM1 STATE_CHANGE ORAI1 -STK11 IN_SAME_COMPONENT CAB39 -STK11 IN_SAME_COMPONENT CDC37 -STK11 IN_SAME_COMPONENT ESR1 -STK11 IN_SAME_COMPONENT HSP90AA1 -STK11 IN_SAME_COMPONENT SMAD4 -STK11 IN_SAME_COMPONENT STK11IP -STK11IP IN_SAME_COMPONENT SMAD4 -STK11IP IN_SAME_COMPONENT STK11 -STK11IP REACTS_WITH SMAD4 -STK11IP REACTS_WITH STK11 -STK11IP REACTS_WITH STK11IP -STK11 METABOLIC_CATALYSIS CTSD -STK11 METABOLIC_CATALYSIS MYC -STK11 METABOLIC_CATALYSIS PSEN2 -STK11 REACTS_WITH CAB39 -STK11 REACTS_WITH CDC37 -STK11 REACTS_WITH ESR1 -STK11 REACTS_WITH HSP90AA1 -STK11 REACTS_WITH SMAD4 -STK11 REACTS_WITH STK11 -STK11 REACTS_WITH STK11IP -STK11 STATE_CHANGE BRSK1 -STK11 STATE_CHANGE BRSK2 -STK11 STATE_CHANGE ETV4 -STK11 STATE_CHANGE MARK2 -STK11 STATE_CHANGE MARK4 -STK11 STATE_CHANGE MST4 -STK11 STATE_CHANGE SIK1 -STK11 STATE_CHANGE SIK2 -STK11 STATE_CHANGE SIK3 -STK11 STATE_CHANGE SMARCD3 -STK36 CO_CONTROL ARRB2 -STK36 CO_CONTROL SMO -STK36 STATE_CHANGE GLI1 -STK36 STATE_CHANGE GLI2 -STK36 STATE_CHANGE SUFU -STK39 IN_SAME_COMPONENT PRKCQ -STK39 REACTS_WITH PRKCQ -STK39 REACTS_WITH STK39 -STRAP CO_CONTROL TGFBR1 -STRAP CO_CONTROL TGFBR2 -STRAP CO_CONTROL ZFYVE9 -STRAP IN_SAME_COMPONENT NEDD4L -STRAP IN_SAME_COMPONENT SMAD7 -STRAP IN_SAME_COMPONENT TGFBR1 -STRAP IN_SAME_COMPONENT TGFBR2 -STRAP REACTS_WITH NEDD4L -STRAP REACTS_WITH SMAD7 -STRAP REACTS_WITH STRAP -STRAP REACTS_WITH TGFBR1 -STRAP REACTS_WITH TGFBR2 -STRAP STATE_CHANGE CTNNB1 -STRAP STATE_CHANGE MAP3K7 -STRAP STATE_CHANGE SMAD2 -STRAP STATE_CHANGE XIAP -STRN IN_SAME_COMPONENT ESR1 -STRN REACTS_WITH ESR1 -STRN REACTS_WITH STRN -STRN STATE_CHANGE AKT1 -STUB1 IN_SAME_COMPONENT SNCA -STUB1 METABOLIC_CATALYSIS SNCA -STUB1 REACTS_WITH SNCA -STUB1 REACTS_WITH STUB1 -STX1A IN_SAME_COMPONENT VAMP2 -STX1A REACTS_WITH STX1A -STX1A REACTS_WITH VAMP2 -STX1A STATE_CHANGE STX1A -STX1A STATE_CHANGE SYT1 -STX1A STATE_CHANGE VAMP2 -STX4 CO_CONTROL CALM1 -STX4 CO_CONTROL EXOC3 -STX4 CO_CONTROL EXOC4 -STX4 CO_CONTROL RHOQ -STX4 CO_CONTROL TRIP10 -STX4 IN_SAME_COMPONENT STXBP4 -STX4 IN_SAME_COMPONENT VAMP2 -STX4 STATE_CHANGE AQP3 -STX4 STATE_CHANGE LNPEP -STX4 STATE_CHANGE SLC2A4 -STX4 STATE_CHANGE VAMP2 -STXBP4 CO_CONTROL CALM1 -STXBP4 CO_CONTROL RHOQ -STXBP4 CO_CONTROL TRIP10 -STXBP4 IN_SAME_COMPONENT STX4 -STXBP4 IN_SAME_COMPONENT VAMP2 -STXBP4 STATE_CHANGE LNPEP -STXBP4 STATE_CHANGE SLC2A4 -STXBP4 STATE_CHANGE VAMP2 -SUFU CO_CONTROL ARRB2 -SUFU CO_CONTROL SMO -SUFU IN_SAME_COMPONENT GLI1 -SUFU IN_SAME_COMPONENT GLI2 -SUFU IN_SAME_COMPONENT GLI3 -SUFU IN_SAME_COMPONENT HDAC1 -SUFU IN_SAME_COMPONENT HDAC2 -SUFU IN_SAME_COMPONENT LGALS3 -SUFU IN_SAME_COMPONENT PIAS1 -SUFU IN_SAME_COMPONENT RBBP4 -SUFU IN_SAME_COMPONENT RBBP7 -SUFU IN_SAME_COMPONENT SAP18 -SUFU IN_SAME_COMPONENT SAP30 -SUFU IN_SAME_COMPONENT SIN3A -SUFU IN_SAME_COMPONENT SIN3B -SUFU REACTS_WITH GLI1 -SUFU REACTS_WITH GLI2 -SUFU REACTS_WITH GLI3 -SUFU REACTS_WITH HDAC1 -SUFU REACTS_WITH HDAC2 -SUFU REACTS_WITH LGALS3 -SUFU REACTS_WITH PIAS1 -SUFU REACTS_WITH RBBP4 -SUFU REACTS_WITH RBBP7 -SUFU REACTS_WITH SAP18 -SUFU REACTS_WITH SAP30 -SUFU REACTS_WITH SIN3A -SUFU REACTS_WITH SIN3B -SUFU REACTS_WITH SUFU -SUFU STATE_CHANGE GLI1 -SUFU STATE_CHANGE GLI3 -SUPT3H IN_SAME_COMPONENT KAT2A -SUPT3H IN_SAME_COMPONENT MAX -SUPT3H IN_SAME_COMPONENT MYC -SUPT3H IN_SAME_COMPONENT SUPT7L -SUPT3H IN_SAME_COMPONENT TAF10 -SUPT3H IN_SAME_COMPONENT TAF12 -SUPT3H IN_SAME_COMPONENT TAF9 -SUPT3H IN_SAME_COMPONENT TRRAP -SUPT3H METABOLIC_CATALYSIS CAD -SUPT3H METABOLIC_CATALYSIS CCND2 -SUPT3H METABOLIC_CATALYSIS CDK4 -SUPT3H METABOLIC_CATALYSIS HSPD1 -SUPT3H METABOLIC_CATALYSIS TERT -SUPT3H REACTS_WITH KAT2A -SUPT3H REACTS_WITH MAX -SUPT3H REACTS_WITH MYC -SUPT3H REACTS_WITH SUPT3H -SUPT3H REACTS_WITH SUPT7L -SUPT3H REACTS_WITH TAF10 -SUPT3H REACTS_WITH TAF12 -SUPT3H REACTS_WITH TAF9 -SUPT3H REACTS_WITH TRRAP -SUPT7L IN_SAME_COMPONENT KAT2A -SUPT7L IN_SAME_COMPONENT MAX -SUPT7L IN_SAME_COMPONENT MYC -SUPT7L IN_SAME_COMPONENT SUPT3H -SUPT7L IN_SAME_COMPONENT TAF10 -SUPT7L IN_SAME_COMPONENT TAF12 -SUPT7L IN_SAME_COMPONENT TAF9 -SUPT7L IN_SAME_COMPONENT TRRAP -SUPT7L METABOLIC_CATALYSIS CAD -SUPT7L METABOLIC_CATALYSIS CCND2 -SUPT7L METABOLIC_CATALYSIS CDK4 -SUPT7L METABOLIC_CATALYSIS HSPD1 -SUPT7L METABOLIC_CATALYSIS TERT -SUPT7L REACTS_WITH KAT2A -SUPT7L REACTS_WITH MAX -SUPT7L REACTS_WITH MYC -SUPT7L REACTS_WITH SUPT3H -SUPT7L REACTS_WITH SUPT7L -SUPT7L REACTS_WITH TAF10 -SUPT7L REACTS_WITH TAF12 -SUPT7L REACTS_WITH TAF9 -SUPT7L REACTS_WITH TRRAP -SUV39H1 IN_SAME_COMPONENT RB1 -SUV39H1 IN_SAME_COMPONENT TFDP1 -SUV39H1 REACTS_WITH RB1 -SUV39H1 REACTS_WITH SUV39H1 -SUV39H1 REACTS_WITH TFDP1 -SUV420H1 IN_SAME_COMPONENT NCOA2 -SUV420H1 REACTS_WITH NCOA2 -SUV420H1 REACTS_WITH SUV420H1 -SVIL CO_CONTROL AR -SVIL METABOLIC_CATALYSIS KLK3 -SYK CO_CONTROL CD19 -SYK CO_CONTROL INPP5D -SYK CO_CONTROL ITGAV -SYK CO_CONTROL ITGB3 -SYK CO_CONTROL SPP1 -SYK CO_CONTROL VAV2 -SYK IN_SAME_COMPONENT BLNK -SYK IN_SAME_COMPONENT BTK -SYK IN_SAME_COMPONENT CD72 -SYK IN_SAME_COMPONENT CD79A -SYK IN_SAME_COMPONENT CD79B -SYK IN_SAME_COMPONENT CSF2 -SYK IN_SAME_COMPONENT CSF2RA -SYK IN_SAME_COMPONENT CSF2RB -SYK IN_SAME_COMPONENT FAS -SYK IN_SAME_COMPONENT FASLG -SYK IN_SAME_COMPONENT FCER1A -SYK IN_SAME_COMPONENT FCER1G -SYK IN_SAME_COMPONENT IGHE -SYK IN_SAME_COMPONENT IL2 -SYK IN_SAME_COMPONENT IL2RA -SYK IN_SAME_COMPONENT IL2RB -SYK IN_SAME_COMPONENT IL2RG -SYK IN_SAME_COMPONENT JAK1 -SYK IN_SAME_COMPONENT JAK3 -SYK IN_SAME_COMPONENT LCK -SYK IN_SAME_COMPONENT LYN -SYK IN_SAME_COMPONENT MS4A2 -SYK IN_SAME_COMPONENT PLCG2 -SYK IN_SAME_COMPONENT SRC -SYK IN_SAME_COMPONENT WIPF1 -SYK REACTS_WITH BLNK -SYK REACTS_WITH BTK -SYK REACTS_WITH CD72 -SYK REACTS_WITH CD79A -SYK REACTS_WITH CD79B -SYK REACTS_WITH CSF2 -SYK REACTS_WITH CSF2RA -SYK REACTS_WITH CSF2RB -SYK REACTS_WITH FAS -SYK REACTS_WITH FASLG -SYK REACTS_WITH FCER1A -SYK REACTS_WITH FCER1G -SYK REACTS_WITH IGHE -SYK REACTS_WITH IL2 -SYK REACTS_WITH IL2RA -SYK REACTS_WITH IL2RB -SYK REACTS_WITH IL2RG -SYK REACTS_WITH JAK1 -SYK REACTS_WITH JAK3 -SYK REACTS_WITH LCK -SYK REACTS_WITH LYN -SYK REACTS_WITH MS4A2 -SYK REACTS_WITH PLCG2 -SYK REACTS_WITH PTPN6 -SYK REACTS_WITH SRC -SYK REACTS_WITH SYK -SYK REACTS_WITH WIPF1 -SYK STATE_CHANGE BCAR1 -SYK STATE_CHANGE BTK -SYK STATE_CHANGE CBL -SYK STATE_CHANGE CBLB -SYK STATE_CHANGE CD19 -SYK STATE_CHANGE FER -SYK STATE_CHANGE HCLS1 -SYK STATE_CHANGE ITK -SYK STATE_CHANGE KLRG1 -SYK STATE_CHANGE LAT -SYK STATE_CHANGE LAT2 -SYK STATE_CHANGE NFKB1 -SYK STATE_CHANGE NFKBIA -SYK STATE_CHANGE PIK3CA -SYK STATE_CHANGE PIK3R1 -SYK STATE_CHANGE PLA2G4A -SYK STATE_CHANGE PTK2B -SYK STATE_CHANGE RELA -SYK STATE_CHANGE SNCA -SYK STATE_CHANGE SPHK1 -SYK STATE_CHANGE VAV1 -SYK STATE_CHANGE VAV2 -SYK STATE_CHANGE VAV3 -SYNJ1 CO_CONTROL AMPH -SYNJ1 CO_CONTROL DNM1 -SYNJ1 CO_CONTROL SH3GL2 -SYNJ1 CO_CONTROL SH3KBP1 -SYNJ1 REACTS_WITH SYNJ1 -SYNJ1 STATE_CHANGE EGF -SYNJ1 STATE_CHANGE EGFR -SYNJ1 STATE_CHANGE TF -SYT1 REACTS_WITH SYT1 -TAB1 IN_SAME_COMPONENT IRAK1 -TAB1 IN_SAME_COMPONENT MAP3K7 -TAB1 IN_SAME_COMPONENT MAPK14 -TAB1 IN_SAME_COMPONENT TAB2 -TAB1 IN_SAME_COMPONENT TRAF6 -TAB1 REACTS_WITH IRAK1 -TAB1 REACTS_WITH MAP3K7 -TAB1 REACTS_WITH MAPK14 -TAB1 REACTS_WITH PRKG1 -TAB1 REACTS_WITH TAB1 -TAB1 REACTS_WITH TAB2 -TAB1 REACTS_WITH TRAF6 -TAB1 STATE_CHANGE CHUK -TAB1 STATE_CHANGE ERC1 -TAB1 STATE_CHANGE IKBKB -TAB1 STATE_CHANGE IKBKG -TAB1 STATE_CHANGE MAP2K6 -TAB1 STATE_CHANGE NLK -TAB2 IN_SAME_COMPONENT IRAK1 -TAB2 IN_SAME_COMPONENT MAP3K7 -TAB2 IN_SAME_COMPONENT NCOR1 -TAB2 IN_SAME_COMPONENT TAB1 -TAB2 IN_SAME_COMPONENT TRAF6 -TAB2 REACTS_WITH IRAK1 -TAB2 REACTS_WITH MAP3K7 -TAB2 REACTS_WITH NCOR1 -TAB2 REACTS_WITH TAB1 -TAB2 REACTS_WITH TAB2 -TAB2 REACTS_WITH TRAF6 -TAB2 STATE_CHANGE CHUK -TAB2 STATE_CHANGE ERC1 -TAB2 STATE_CHANGE IKBKB -TAB2 STATE_CHANGE IKBKG -TAB2 STATE_CHANGE MAP2K6 -TAB2 STATE_CHANGE TRAF6 -TACC1 IN_SAME_COMPONENT AURKA -TACC1 IN_SAME_COMPONENT AURKB -TACC1 IN_SAME_COMPONENT CKAP5 -TACC1 IN_SAME_COMPONENT TDRD7 -TACC1 REACTS_WITH AURKA -TACC1 REACTS_WITH AURKB -TACC1 REACTS_WITH CKAP5 -TACC1 REACTS_WITH TACC1 -TACC1 REACTS_WITH TDRD7 -TACC3 IN_SAME_COMPONENT AURKA -TACC3 IN_SAME_COMPONENT NDEL1 -TACC3 REACTS_WITH AURKA -TACC3 REACTS_WITH NDEL1 -TACC3 REACTS_WITH TACC3 -TADA2B CO_CONTROL CARM1 -TADA2B CO_CONTROL HDAC2 -TADA2B CO_CONTROL POU4F1 -TADA2B CO_CONTROL PRMT1 -TADA2B CO_CONTROL SMARCA4 -TADA2B CO_CONTROL SNAI2 -TADA2B CO_CONTROL SP1 -TADA2B CO_CONTROL TP53 -TADA2B CO_CONTROL ZNF385A -TADA2B IN_SAME_COMPONENT TAF9 -TADA2B METABOLIC_CATALYSIS BBC3 -TADA2B METABOLIC_CATALYSIS CDKN1A -TADA2B METABOLIC_CATALYSIS GADD45A -TAF10 IN_SAME_COMPONENT KAT2A -TAF10 IN_SAME_COMPONENT MAX -TAF10 IN_SAME_COMPONENT MYC -TAF10 IN_SAME_COMPONENT SUPT3H -TAF10 IN_SAME_COMPONENT SUPT7L -TAF10 IN_SAME_COMPONENT TAF12 -TAF10 IN_SAME_COMPONENT TAF9 -TAF10 IN_SAME_COMPONENT TRRAP -TAF10 METABOLIC_CATALYSIS CAD -TAF10 METABOLIC_CATALYSIS CCND2 -TAF10 METABOLIC_CATALYSIS CDK4 -TAF10 METABOLIC_CATALYSIS HSPD1 -TAF10 METABOLIC_CATALYSIS TERT -TAF10 REACTS_WITH KAT2A -TAF10 REACTS_WITH MAX -TAF10 REACTS_WITH MYC -TAF10 REACTS_WITH SUPT3H -TAF10 REACTS_WITH SUPT7L -TAF10 REACTS_WITH TAF10 -TAF10 REACTS_WITH TAF12 -TAF10 REACTS_WITH TAF9 -TAF10 REACTS_WITH TRRAP -TAF12 IN_SAME_COMPONENT KAT2A -TAF12 IN_SAME_COMPONENT MAX -TAF12 IN_SAME_COMPONENT MYC -TAF12 IN_SAME_COMPONENT SUPT3H -TAF12 IN_SAME_COMPONENT SUPT7L -TAF12 IN_SAME_COMPONENT TAF10 -TAF12 IN_SAME_COMPONENT TAF9 -TAF12 IN_SAME_COMPONENT TRRAP -TAF12 METABOLIC_CATALYSIS CAD -TAF12 METABOLIC_CATALYSIS CCND2 -TAF12 METABOLIC_CATALYSIS CDK4 -TAF12 METABOLIC_CATALYSIS HSPD1 -TAF12 METABOLIC_CATALYSIS TERT -TAF12 REACTS_WITH KAT2A -TAF12 REACTS_WITH MAX -TAF12 REACTS_WITH MYC -TAF12 REACTS_WITH SUPT3H -TAF12 REACTS_WITH SUPT7L -TAF12 REACTS_WITH TAF10 -TAF12 REACTS_WITH TAF12 -TAF12 REACTS_WITH TAF9 -TAF12 REACTS_WITH TRRAP -TAF9 CO_CONTROL CARM1 -TAF9 CO_CONTROL HDAC2 -TAF9 CO_CONTROL POU4F1 -TAF9 CO_CONTROL PRMT1 -TAF9 CO_CONTROL SMARCA4 -TAF9 CO_CONTROL SNAI2 -TAF9 CO_CONTROL SP1 -TAF9 CO_CONTROL TP53 -TAF9 CO_CONTROL ZNF385A -TAF9 IN_SAME_COMPONENT KAT2A -TAF9 IN_SAME_COMPONENT MAX -TAF9 IN_SAME_COMPONENT MYC -TAF9 IN_SAME_COMPONENT SUPT3H -TAF9 IN_SAME_COMPONENT SUPT7L -TAF9 IN_SAME_COMPONENT TADA2B -TAF9 IN_SAME_COMPONENT TAF10 -TAF9 IN_SAME_COMPONENT TAF12 -TAF9 IN_SAME_COMPONENT TRRAP -TAF9 METABOLIC_CATALYSIS BBC3 -TAF9 METABOLIC_CATALYSIS CAD -TAF9 METABOLIC_CATALYSIS CCND2 -TAF9 METABOLIC_CATALYSIS CDK4 -TAF9 METABOLIC_CATALYSIS CDKN1A -TAF9 METABOLIC_CATALYSIS GADD45A -TAF9 METABOLIC_CATALYSIS HSPD1 -TAF9 METABOLIC_CATALYSIS TERT -TAF9 REACTS_WITH KAT2A -TAF9 REACTS_WITH MAX -TAF9 REACTS_WITH MYC -TAF9 REACTS_WITH SUPT3H -TAF9 REACTS_WITH SUPT7L -TAF9 REACTS_WITH TAF10 -TAF9 REACTS_WITH TAF12 -TAF9 REACTS_WITH TAF9 -TAF9 REACTS_WITH TRRAP -TBC1D4 CO_CONTROL TBC1D4 -TBC1D4 REACTS_WITH CALM1 -TBC1D4 REACTS_WITH TBC1D4 -TBC1D4 STATE_CHANGE LNPEP -TBC1D4 STATE_CHANGE SLC2A4 -TBC1D4 STATE_CHANGE VAMP2 -TBL1X IN_SAME_COMPONENT CTNNB1 -TBL1X IN_SAME_COMPONENT TBL1XR1 -TBL1X IN_SAME_COMPONENT TCF4 -TBL1X IN_SAME_COMPONENT TCF7L2 -TBL1X METABOLIC_CATALYSIS AXIN2 -TBL1XR1 IN_SAME_COMPONENT CTNNB1 -TBL1XR1 IN_SAME_COMPONENT TBL1X -TBL1XR1 IN_SAME_COMPONENT TCF4 -TBL1XR1 IN_SAME_COMPONENT TCF7L2 -TBL1XR1 METABOLIC_CATALYSIS AXIN2 -TBL1XR1 REACTS_WITH CTNNB1 -TBL1XR1 REACTS_WITH HDAC1 -TBL1XR1 REACTS_WITH TBL1X -TBL1XR1 REACTS_WITH TBL1XR1 -TBL1XR1 REACTS_WITH TCF4 -TBL1XR1 REACTS_WITH TLE1 -TBL1X REACTS_WITH CTNNB1 -TBL1X REACTS_WITH HDAC1 -TBL1X REACTS_WITH TBL1X -TBL1X REACTS_WITH TBL1XR1 -TBL1X REACTS_WITH TCF4 -TBL1X REACTS_WITH TLE1 -TBP CO_CONTROL BRCA1 -TBP CO_CONTROL CREB1 -TBP CO_CONTROL MAX -TBP CO_CONTROL MYC -TBP CO_CONTROL SP1 -TBP CO_CONTROL ZBTB17 -TBP IN_SAME_COMPONENT SPI1 -TBP METABOLIC_CATALYSIS BGLAP -TBP METABOLIC_CATALYSIS CEBPD -TBP METABOLIC_CATALYSIS S100A7 -TBP REACTS_WITH SPI1 -TBP REACTS_WITH TBP -TBX21 CO_CONTROL CD247 -TBX21 CO_CONTROL CD28 -TBX21 CO_CONTROL CD3D -TBX21 CO_CONTROL CD3E -TBX21 CO_CONTROL CD3G -TBX21 CO_CONTROL CD4 -TBX21 CO_CONTROL FOS -TBX21 CO_CONTROL HLA-DRA -TBX21 CO_CONTROL HLA-DRB1 -TBX21 CO_CONTROL IL2 -TBX21 CO_CONTROL JUN -TBX21 CO_CONTROL STAT3 -TBX21 CO_CONTROL STAT4 -TBX21 CO_CONTROL TGFB1 -TBX21 METABOLIC_CATALYSIS IFNG -TBXA2R IN_SAME_COMPONENT ARR3 -TBXA2R IN_SAME_COMPONENT ARRB2 -TBXA2R IN_SAME_COMPONENT GNAI2 -TBXA2R IN_SAME_COMPONENT GNB5 -TBXA2R IN_SAME_COMPONENT GNG2 -TBXA2R IN_SAME_COMPONENT RAB11A -TBXA2R REACTS_WITH ARR3 -TBXA2R REACTS_WITH ARRB2 -TBXA2R REACTS_WITH GNAI2 -TBXA2R REACTS_WITH GNB5 -TBXA2R REACTS_WITH GNG2 -TBXA2R REACTS_WITH RAB11A -TBXA2R REACTS_WITH TBXA2R -TBXA2R STATE_CHANGE GNAI2 -TBXA2R STATE_CHANGE GNB5 -TBXA2R STATE_CHANGE GNG2 -TBXA2R STATE_CHANGE TBXA2R -TCEB1 IN_SAME_COMPONENT CUL2 -TCEB1 IN_SAME_COMPONENT EPAS1 -TCEB1 IN_SAME_COMPONENT HIF1A -TCEB1 IN_SAME_COMPONENT RBX1 -TCEB1 IN_SAME_COMPONENT TCEB2 -TCEB1 IN_SAME_COMPONENT VHL -TCEB1 REACTS_WITH CUL2 -TCEB1 REACTS_WITH EPAS1 -TCEB1 REACTS_WITH HIF1A -TCEB1 REACTS_WITH HSP90AA1 -TCEB1 REACTS_WITH RBX1 -TCEB1 REACTS_WITH TCEB1 -TCEB1 REACTS_WITH TCEB2 -TCEB1 REACTS_WITH VHL -TCEB2 IN_SAME_COMPONENT CUL2 -TCEB2 IN_SAME_COMPONENT EPAS1 -TCEB2 IN_SAME_COMPONENT HIF1A -TCEB2 IN_SAME_COMPONENT RBX1 -TCEB2 IN_SAME_COMPONENT TCEB1 -TCEB2 IN_SAME_COMPONENT VHL -TCEB2 REACTS_WITH CUL2 -TCEB2 REACTS_WITH EPAS1 -TCEB2 REACTS_WITH HIF1A -TCEB2 REACTS_WITH HSP90AA1 -TCEB2 REACTS_WITH RBX1 -TCEB2 REACTS_WITH TCEB1 -TCEB2 REACTS_WITH TCEB2 -TCEB2 REACTS_WITH VHL -TCF3 IN_SAME_COMPONENT MAPKAPK2 -TCF3 IN_SAME_COMPONENT MYOD1 -TCF3 REACTS_WITH HEY1 -TCF3 REACTS_WITH MAPKAPK2 -TCF3 REACTS_WITH MYOD1 -TCF3 REACTS_WITH SMAD4 -TCF3 REACTS_WITH TCF3 -TCF4 CO_CONTROL AR -TCF4 IN_SAME_COMPONENT CTNNB1 -TCF4 IN_SAME_COMPONENT HDAC1 -TCF4 IN_SAME_COMPONENT TBL1X -TCF4 IN_SAME_COMPONENT TBL1XR1 -TCF4 IN_SAME_COMPONENT TLE1 -TCF4 METABOLIC_CATALYSIS KLK3 -TCF4 REACTS_WITH CTNNB1 -TCF4 REACTS_WITH HDAC1 -TCF4 REACTS_WITH TBL1X -TCF4 REACTS_WITH TBL1XR1 -TCF4 REACTS_WITH TCF4 -TCF4 REACTS_WITH TLE1 -TCF7 IN_SAME_COMPONENT CTNNB1 -TCF7 IN_SAME_COMPONENT TLE2 -TCF7L1 IN_SAME_COMPONENT CTNNB1 -TCF7L1 IN_SAME_COMPONENT TLE2 -TCF7L1 METABOLIC_CATALYSIS AXIN2 -TCF7L1 METABOLIC_CATALYSIS CCND1 -TCF7L1 METABOLIC_CATALYSIS MYC -TCF7L1 REACTS_WITH CTNNB1 -TCF7L1 REACTS_WITH SMARCA4 -TCF7L1 REACTS_WITH TCF7L1 -TCF7L1 REACTS_WITH TERT -TCF7L1 REACTS_WITH TLE2 -TCF7L2 IN_SAME_COMPONENT ADCY7 -TCF7L2 IN_SAME_COMPONENT BTRC -TCF7L2 IN_SAME_COMPONENT CTNNB1 -TCF7L2 IN_SAME_COMPONENT CUL1 -TCF7L2 IN_SAME_COMPONENT DVL3 -TCF7L2 IN_SAME_COMPONENT EP300 -TCF7L2 IN_SAME_COMPONENT FOS -TCF7L2 IN_SAME_COMPONENT HBP1 -TCF7L2 IN_SAME_COMPONENT JUN -TCF7L2 IN_SAME_COMPONENT KLF4 -TCF7L2 IN_SAME_COMPONENT RUVBL2 -TCF7L2 IN_SAME_COMPONENT SKP1 -TCF7L2 IN_SAME_COMPONENT TBL1X -TCF7L2 IN_SAME_COMPONENT TBL1XR1 -TCF7L2 IN_SAME_COMPONENT TLE2 -TCF7L2 IN_SAME_COMPONENT TLE4 -TCF7L2 IN_SAME_COMPONENT TNIK -TCF7L2 IN_SAME_COMPONENT TRRAP -TCF7L2 METABOLIC_CATALYSIS AXIN2 -TCF7L2 METABOLIC_CATALYSIS CCND1 -TCF7L2 METABOLIC_CATALYSIS DKK1 -TCF7L2 METABOLIC_CATALYSIS ID2 -TCF7L2 METABOLIC_CATALYSIS IGF2BP1 -TCF7L2 METABOLIC_CATALYSIS IL8 -TCF7L2 METABOLIC_CATALYSIS INCENP -TCF7L2 METABOLIC_CATALYSIS MYC -TCF7L2 METABOLIC_CATALYSIS T -TCF7L2 METABOLIC_CATALYSIS TCF7 -TCF7L2 METABOLIC_CATALYSIS ZCCHC12 -TCF7L2 REACTS_WITH ADCY7 -TCF7L2 REACTS_WITH AR -TCF7L2 REACTS_WITH BTRC -TCF7L2 REACTS_WITH CTNNB1 -TCF7L2 REACTS_WITH CUL1 -TCF7L2 REACTS_WITH DVL3 -TCF7L2 REACTS_WITH EP300 -TCF7L2 REACTS_WITH FOS -TCF7L2 REACTS_WITH HBP1 -TCF7L2 REACTS_WITH JUN -TCF7L2 REACTS_WITH KLF4 -TCF7L2 REACTS_WITH NCOA2 -TCF7L2 REACTS_WITH RUVBL2 -TCF7L2 REACTS_WITH SKP1 -TCF7L2 REACTS_WITH TCF7L2 -TCF7L2 REACTS_WITH TLE2 -TCF7L2 REACTS_WITH TLE4 -TCF7L2 REACTS_WITH TNIK -TCF7L2 REACTS_WITH TRRAP -TCF7L2 STATE_CHANGE CTNNB1 -TCF7L2 STATE_CHANGE EP300 -TCF7L2 STATE_CHANGE TCF7L2 -TCF7 REACTS_WITH CTNNB1 -TCF7 REACTS_WITH TCF7 -TCF7 REACTS_WITH TLE2 -TDGF1 IN_SAME_COMPONENT GPC1 -TDGF1 REACTS_WITH GPC1 -TDGF1 REACTS_WITH TDGF1 -TDP2 IN_SAME_COMPONENT CD40 -TDP2 IN_SAME_COMPONENT CD40LG -TDP2 REACTS_WITH CD40 -TDP2 REACTS_WITH CD40LG -TDP2 REACTS_WITH TDP2 -TDP2 STATE_CHANGE NFKB1 -TDP2 STATE_CHANGE NFKBIA -TDP2 STATE_CHANGE RELA -TDRD7 IN_SAME_COMPONENT AURKA -TDRD7 IN_SAME_COMPONENT CKAP5 -TDRD7 IN_SAME_COMPONENT TACC1 -TDRD7 REACTS_WITH AURKA -TDRD7 REACTS_WITH CKAP5 -TDRD7 REACTS_WITH TACC1 -TDRD7 REACTS_WITH TDRD7 -TEC IN_SAME_COMPONENT DOK1 -TEC IN_SAME_COMPONENT LYN -TEC IN_SAME_COMPONENT VAV2 -TEC REACTS_WITH DOK1 -TEC REACTS_WITH LYN -TEC REACTS_WITH TEC -TEC REACTS_WITH VAV2 -TEK IN_SAME_COMPONENT ANGPT1 -TEK IN_SAME_COMPONENT ANGPT2 -TEK IN_SAME_COMPONENT GRB14 -TEK IN_SAME_COMPONENT GRB7 -TEK IN_SAME_COMPONENT ITGA5 -TEK IN_SAME_COMPONENT ITGB1 -TEK IN_SAME_COMPONENT PTPN11 -TEK IN_SAME_COMPONENT SHC1 -TEK IN_SAME_COMPONENT TNIP2 -TEK METABOLIC_CATALYSIS CDKN1A -TEK METABOLIC_CATALYSIS ELF2 -TEK REACTS_WITH ANGPT1 -TEK REACTS_WITH ANGPT2 -TEK REACTS_WITH GRB14 -TEK REACTS_WITH GRB7 -TEK REACTS_WITH ITGA5 -TEK REACTS_WITH ITGB1 -TEK REACTS_WITH PTPN11 -TEK REACTS_WITH SHC1 -TEK REACTS_WITH TEK -TEK REACTS_WITH TNIP2 -TEK STATE_CHANGE BMX -TEK STATE_CHANGE CRK -TEK STATE_CHANGE DOK2 -TEK STATE_CHANGE FES -TEK STATE_CHANGE FYN -TEK STATE_CHANGE MAPK14 -TEK STATE_CHANGE MAPK8 -TEK STATE_CHANGE MMP2 -TEK STATE_CHANGE NCK1 -TEK STATE_CHANGE PIK3CA -TEK STATE_CHANGE PIK3R1 -TEK STATE_CHANGE PLD2 -TEK STATE_CHANGE PLG -TEK STATE_CHANGE RASA1 -TEK STATE_CHANGE STAT5A -TERF1 IN_SAME_COMPONENT ACD -TERF1 IN_SAME_COMPONENT POT1 -TERF1 IN_SAME_COMPONENT TINF2 -TERF1 IN_SAME_COMPONENT TNKS -TERF1 REACTS_WITH ACD -TERF1 REACTS_WITH POT1 -TERF1 REACTS_WITH TERF1 -TERF1 REACTS_WITH TERF2 -TERF1 REACTS_WITH TERF2IP -TERF1 REACTS_WITH TINF2 -TERF1 REACTS_WITH TNKS -TERF2 IN_SAME_COMPONENT ATM -TERF2 IN_SAME_COMPONENT BLM -TERF2 IN_SAME_COMPONENT MRE11A -TERF2 IN_SAME_COMPONENT NBN -TERF2 IN_SAME_COMPONENT PARP2 -TERF2 IN_SAME_COMPONENT RAD50 -TERF2 IN_SAME_COMPONENT TERF2IP -TERF2 IN_SAME_COMPONENT WRN -TERF2IP IN_SAME_COMPONENT MRE11A -TERF2IP IN_SAME_COMPONENT NBN -TERF2IP IN_SAME_COMPONENT RAD50 -TERF2IP IN_SAME_COMPONENT TERF2 -TERF2IP REACTS_WITH ACD -TERF2IP REACTS_WITH MRE11A -TERF2IP REACTS_WITH NBN -TERF2IP REACTS_WITH POT1 -TERF2IP REACTS_WITH RAD50 -TERF2IP REACTS_WITH TERF1 -TERF2IP REACTS_WITH TERF2 -TERF2IP REACTS_WITH TERF2IP -TERF2IP REACTS_WITH TINF2 -TERF2 REACTS_WITH ACD -TERF2 REACTS_WITH ATM -TERF2 REACTS_WITH BLM -TERF2 REACTS_WITH MRE11A -TERF2 REACTS_WITH NBN -TERF2 REACTS_WITH PARP2 -TERF2 REACTS_WITH POT1 -TERF2 REACTS_WITH RAD50 -TERF2 REACTS_WITH TERF1 -TERF2 REACTS_WITH TERF2 -TERF2 REACTS_WITH TERF2IP -TERF2 REACTS_WITH TINF2 -TERF2 REACTS_WITH WRN -TERF2 STATE_CHANGE ATM -TERT IN_SAME_COMPONENT ABL1 -TERT IN_SAME_COMPONENT AKT1 -TERT IN_SAME_COMPONENT DKC1 -TERT IN_SAME_COMPONENT HNRNPC -TERT IN_SAME_COMPONENT HSP90AA1 -TERT IN_SAME_COMPONENT HUS1 -TERT IN_SAME_COMPONENT MTOR -TERT IN_SAME_COMPONENT NCL -TERT IN_SAME_COMPONENT NFKB1 -TERT IN_SAME_COMPONENT PINX1 -TERT IN_SAME_COMPONENT PTGES3 -TERT IN_SAME_COMPONENT RAD1 -TERT IN_SAME_COMPONENT RAD9A -TERT IN_SAME_COMPONENT RPS6KB1 -TERT IN_SAME_COMPONENT SMG5 -TERT IN_SAME_COMPONENT SMG6 -TERT IN_SAME_COMPONENT XRCC5 -TERT IN_SAME_COMPONENT XRCC6 -TERT IN_SAME_COMPONENT YWHAE -TERT METABOLIC_CATALYSIS CCND1 -TERT REACTS_WITH ABL1 -TERT REACTS_WITH AKT1 -TERT REACTS_WITH CTNNB1 -TERT REACTS_WITH DKC1 -TERT REACTS_WITH HNRNPC -TERT REACTS_WITH HSP90AA1 -TERT REACTS_WITH HUS1 -TERT REACTS_WITH MTOR -TERT REACTS_WITH NCL -TERT REACTS_WITH NFKB1 -TERT REACTS_WITH PINX1 -TERT REACTS_WITH PTGES3 -TERT REACTS_WITH RAD1 -TERT REACTS_WITH RAD9A -TERT REACTS_WITH RPS6KB1 -TERT REACTS_WITH SMARCA4 -TERT REACTS_WITH SMG5 -TERT REACTS_WITH SMG6 -TERT REACTS_WITH TCF7L1 -TERT REACTS_WITH TERT -TERT REACTS_WITH XRCC5 -TERT REACTS_WITH XRCC6 -TERT REACTS_WITH YWHAE -TFCP2 IN_SAME_COMPONENT HDAC1 -TFCP2 IN_SAME_COMPONENT YY1 -TFCP2 REACTS_WITH HDAC1 -TFCP2 REACTS_WITH TFCP2 -TFCP2 REACTS_WITH YY1 -TFDP1 CO_CONTROL CEBPA -TFDP1 CO_CONTROL CEBPB -TFDP1 CO_CONTROL E2F1 -TFDP1 CO_CONTROL E2F4 -TFDP1 CO_CONTROL E2F7 -TFDP1 CO_CONTROL HDAC1 -TFDP1 CO_CONTROL MYBL2 -TFDP1 CO_CONTROL PRMT5 -TFDP1 CO_CONTROL RB1 -TFDP1 CO_CONTROL RBBP4 -TFDP1 CO_CONTROL SMARCA2 -TFDP1 CO_CONTROL SP1 -TFDP1 CO_CONTROL TFDP1 -TFDP1 CO_CONTROL TFDP2 -TFDP1 CO_CONTROL TP53 -TFDP1 CO_CONTROL TRIM28 -TFDP1 IN_SAME_COMPONENT AATF -TFDP1 IN_SAME_COMPONENT CBX4 -TFDP1 IN_SAME_COMPONENT CTBP1 -TFDP1 IN_SAME_COMPONENT DNMT1 -TFDP1 IN_SAME_COMPONENT E2F4 -TFDP1 IN_SAME_COMPONENT HDAC1 -TFDP1 IN_SAME_COMPONENT HDAC3 -TFDP1 IN_SAME_COMPONENT RB1 -TFDP1 IN_SAME_COMPONENT RBBP4 -TFDP1 IN_SAME_COMPONENT RBL1 -TFDP1 IN_SAME_COMPONENT SMAD4 -TFDP1 IN_SAME_COMPONENT SPI1 -TFDP1 IN_SAME_COMPONENT SUV39H1 -TFDP1 METABOLIC_CATALYSIS CASP7 -TFDP1 METABOLIC_CATALYSIS CAV1 -TFDP1 METABOLIC_CATALYSIS CCND3 -TFDP1 METABOLIC_CATALYSIS CDK1 -TFDP1 METABOLIC_CATALYSIS MCM3 -TFDP1 METABOLIC_CATALYSIS MYC -TFDP1 METABOLIC_CATALYSIS ORC1 -TFDP1 METABOLIC_CATALYSIS PLAU -TFDP1 METABOLIC_CATALYSIS RBL1 -TFDP1 METABOLIC_CATALYSIS SERPINE1 -TFDP1 REACTS_WITH AATF -TFDP1 REACTS_WITH CBX4 -TFDP1 REACTS_WITH CTBP1 -TFDP1 REACTS_WITH DNMT1 -TFDP1 REACTS_WITH E2F4 -TFDP1 REACTS_WITH ELF1 -TFDP1 REACTS_WITH GSC -TFDP1 REACTS_WITH HDAC1 -TFDP1 REACTS_WITH HDAC3 -TFDP1 REACTS_WITH RB1 -TFDP1 REACTS_WITH RBBP4 -TFDP1 REACTS_WITH SPI1 -TFDP1 REACTS_WITH SUV39H1 -TFDP1 REACTS_WITH TFDP1 -TFDP1 STATE_CHANGE MEF2C -TFDP1 STATE_CHANGE SPI1 -TFDP1 STATE_CHANGE TBP -TFDP2 CO_CONTROL E2F1 -TFDP2 CO_CONTROL E2F4 -TFDP2 CO_CONTROL MYBL2 -TFDP2 CO_CONTROL SP1 -TFDP2 CO_CONTROL TFDP1 -TFDP2 CO_CONTROL TFDP2 -TFDP2 IN_SAME_COMPONENT E2F4 -TFDP2 IN_SAME_COMPONENT HDAC1 -TFDP2 IN_SAME_COMPONENT KAT2A -TFDP2 IN_SAME_COMPONENT TRRAP -TFDP2 METABOLIC_CATALYSIS BRCA1 -TFDP2 METABOLIC_CATALYSIS CDC25A -TFDP2 METABOLIC_CATALYSIS CDK1 -TFDP2 METABOLIC_CATALYSIS DHFR -TFDP2 METABOLIC_CATALYSIS E2F1 -TFDP2 METABOLIC_CATALYSIS MYBL2 -TFDP2 METABOLIC_CATALYSIS MYC -TFDP2 REACTS_WITH E2F4 -TFDP2 REACTS_WITH HDAC1 -TFDP2 REACTS_WITH TFDP2 -TFE3 CO_CONTROL MAX -TFE3 CO_CONTROL SMAD4 -TFE3 IN_SAME_COMPONENT E2F3 -TFE3 IN_SAME_COMPONENT SMAD4 -TFE3 METABOLIC_CATALYSIS LAMC1 -TFE3 METABOLIC_CATALYSIS POLA1 -TFE3 METABOLIC_CATALYSIS RRM1 -TFE3 METABOLIC_CATALYSIS RRM2 -TFE3 METABOLIC_CATALYSIS SERPINE1 -TFE3 METABOLIC_CATALYSIS SMAD7 -TFE3 REACTS_WITH E2F3 -TFE3 REACTS_WITH SMAD4 -TFE3 REACTS_WITH TFE3 -TFPI IN_SAME_COMPONENT SDC4 -TFPI REACTS_WITH SDC4 -TFPI REACTS_WITH TFPI -TGFA IN_SAME_COMPONENT EGFR -TGFA IN_SAME_COMPONENT ERBB2 -TGFA IN_SAME_COMPONENT ERBB3 -TGFA REACTS_WITH EGFR -TGFA REACTS_WITH ERBB2 -TGFA REACTS_WITH ERBB3 -TGFA REACTS_WITH TGFA -TGFB1 CO_CONTROL ACVRL1 -TGFB1 CO_CONTROL ARRB2 -TGFB1 CO_CONTROL CAV1 -TGFB1 CO_CONTROL IL2 -TGFB1 CO_CONTROL IL6 -TGFB1 CO_CONTROL PPP1CA -TGFB1 CO_CONTROL PRKACA -TGFB1 CO_CONTROL STAT1 -TGFB1 CO_CONTROL STAT4 -TGFB1 CO_CONTROL TBX21 -TGFB1 CO_CONTROL TGFB1 -TGFB1 CO_CONTROL TGFBR1 -TGFB1 CO_CONTROL TGFBR2 -TGFB1I1 CO_CONTROL AR -TGFB1I1 CO_CONTROL PTK2B -TGFB1I1 METABOLIC_CATALYSIS KLK3 -TGFB1 IN_SAME_COMPONENT ACVRL1 -TGFB1 IN_SAME_COMPONENT CAV1 -TGFB1 IN_SAME_COMPONENT CSNK2B -TGFB1 IN_SAME_COMPONENT PPP1CA -TGFB1 IN_SAME_COMPONENT SDC2 -TGFB1 IN_SAME_COMPONENT TGFBR1 -TGFB1 IN_SAME_COMPONENT TGFBR2 -TGFB1 METABOLIC_CATALYSIS IFNG -TGFB1 METABOLIC_CATALYSIS IL17A -TGFB1 REACTS_WITH ACVRL1 -TGFB1 REACTS_WITH CAV1 -TGFB1 REACTS_WITH CSNK2B -TGFB1 REACTS_WITH FKBP1A -TGFB1 REACTS_WITH PPP1CA -TGFB1 REACTS_WITH SDC2 -TGFB1 REACTS_WITH TGFB1 -TGFB1 REACTS_WITH TGFBR1 -TGFB1 REACTS_WITH TGFBR2 -TGFB1 STATE_CHANGE SDC1 -TGFB2 METABOLIC_CATALYSIS PTHLH -TGFB3 IN_SAME_COMPONENT ACVRL1 -TGFB3 IN_SAME_COMPONENT TGFBR1 -TGFB3 IN_SAME_COMPONENT TGFBR2 -TGFB3 REACTS_WITH ACVRL1 -TGFB3 REACTS_WITH FKBP1A -TGFB3 REACTS_WITH TGFB3 -TGFB3 REACTS_WITH TGFBR1 -TGFB3 REACTS_WITH TGFBR2 -TGFBI IN_SAME_COMPONENT ITGA3 -TGFBI IN_SAME_COMPONENT ITGAM -TGFBI IN_SAME_COMPONENT ITGAV -TGFBI IN_SAME_COMPONENT ITGB1 -TGFBI IN_SAME_COMPONENT ITGB2 -TGFBI IN_SAME_COMPONENT ITGB3 -TGFBI REACTS_WITH ITGA3 -TGFBI REACTS_WITH ITGAM -TGFBI REACTS_WITH ITGAV -TGFBI REACTS_WITH ITGB1 -TGFBI REACTS_WITH ITGB2 -TGFBI REACTS_WITH ITGB3 -TGFBI REACTS_WITH TGFBI -TGFBR1 CO_CONTROL ACVRL1 -TGFBR1 CO_CONTROL CAMK2A -TGFBR1 CO_CONTROL CAV1 -TGFBR1 CO_CONTROL PPP1CA -TGFBR1 CO_CONTROL PPP2CA -TGFBR1 CO_CONTROL PPP2CB -TGFBR1 CO_CONTROL SMAD7 -TGFBR1 CO_CONTROL STRAP -TGFBR1 CO_CONTROL TGFB1 -TGFBR1 CO_CONTROL TGFBR1 -TGFBR1 CO_CONTROL TGFBR2 -TGFBR1 CO_CONTROL ZFYVE9 -TGFBR1 IN_SAME_COMPONENT ACVRL1 -TGFBR1 IN_SAME_COMPONENT BAMBI -TGFBR1 IN_SAME_COMPONENT CAV1 -TGFBR1 IN_SAME_COMPONENT CSNK2B -TGFBR1 IN_SAME_COMPONENT DAB2 -TGFBR1 IN_SAME_COMPONENT DAXX -TGFBR1 IN_SAME_COMPONENT DYNLRB1 -TGFBR1 IN_SAME_COMPONENT FKBP1A -TGFBR1 IN_SAME_COMPONENT GPC1 -TGFBR1 IN_SAME_COMPONENT ITGAV -TGFBR1 IN_SAME_COMPONENT ITGB8 -TGFBR1 IN_SAME_COMPONENT NEDD4L -TGFBR1 IN_SAME_COMPONENT OCLN -TGFBR1 IN_SAME_COMPONENT PARD6A -TGFBR1 IN_SAME_COMPONENT PPP1CA -TGFBR1 IN_SAME_COMPONENT PPP1R15A -TGFBR1 IN_SAME_COMPONENT PPP2R2A -TGFBR1 IN_SAME_COMPONENT SMAD2 -TGFBR1 IN_SAME_COMPONENT SMAD4 -TGFBR1 IN_SAME_COMPONENT SMAD7 -TGFBR1 IN_SAME_COMPONENT SMURF1 -TGFBR1 IN_SAME_COMPONENT STRAP -TGFBR1 IN_SAME_COMPONENT TGFB1 -TGFBR1 IN_SAME_COMPONENT TGFB3 -TGFBR1 IN_SAME_COMPONENT TGFBR2 -TGFBR1 IN_SAME_COMPONENT TGFBRAP1 -TGFBR1 IN_SAME_COMPONENT WWP1 -TGFBR1 IN_SAME_COMPONENT YAP1 -TGFBR1 IN_SAME_COMPONENT ZFYVE16 -TGFBR1 IN_SAME_COMPONENT ZFYVE9 -TGFBR1 REACTS_WITH ACVRL1 -TGFBR1 REACTS_WITH CAV1 -TGFBR1 REACTS_WITH CSNK2B -TGFBR1 REACTS_WITH DYNLRB1 -TGFBR1 REACTS_WITH FKBP1A -TGFBR1 REACTS_WITH GPC1 -TGFBR1 REACTS_WITH ITGAV -TGFBR1 REACTS_WITH ITGB8 -TGFBR1 REACTS_WITH NEDD4L -TGFBR1 REACTS_WITH OCLN -TGFBR1 REACTS_WITH PARD6A -TGFBR1 REACTS_WITH PPP1CA -TGFBR1 REACTS_WITH PPP1R15A -TGFBR1 REACTS_WITH PPP2R2A -TGFBR1 REACTS_WITH SMAD2 -TGFBR1 REACTS_WITH SMAD4 -TGFBR1 REACTS_WITH SMAD7 -TGFBR1 REACTS_WITH SMURF1 -TGFBR1 REACTS_WITH SMURF2 -TGFBR1 REACTS_WITH STRAP -TGFBR1 REACTS_WITH TGFB1 -TGFBR1 REACTS_WITH TGFB3 -TGFBR1 REACTS_WITH TGFBR1 -TGFBR1 REACTS_WITH TGFBR2 -TGFBR1 REACTS_WITH TGFBR3 -TGFBR1 REACTS_WITH TGFBRAP1 -TGFBR1 REACTS_WITH WWP1 -TGFBR1 REACTS_WITH YAP1 -TGFBR1 REACTS_WITH ZFYVE16 -TGFBR1 REACTS_WITH ZFYVE9 -TGFBR1 STATE_CHANGE AXIN1 -TGFBR1 STATE_CHANGE CTNNB1 -TGFBR1 STATE_CHANGE EIF2A -TGFBR1 STATE_CHANGE FKBP1A -TGFBR1 STATE_CHANGE MAP3K7 -TGFBR1 STATE_CHANGE RPS6KB1 -TGFBR1 STATE_CHANGE SHC1 -TGFBR1 STATE_CHANGE SMAD2 -TGFBR1 STATE_CHANGE SMAD7 -TGFBR1 STATE_CHANGE SPTBN1 -TGFBR1 STATE_CHANGE STRAP -TGFBR1 STATE_CHANGE TGFBR1 -TGFBR1 STATE_CHANGE TGFBR2 -TGFBR1 STATE_CHANGE TGFBR3 -TGFBR1 STATE_CHANGE XIAP -TGFBR2 CO_CONTROL ACVRL1 -TGFBR2 CO_CONTROL CAMK2A -TGFBR2 CO_CONTROL CAV1 -TGFBR2 CO_CONTROL PPP1CA -TGFBR2 CO_CONTROL PPP2CA -TGFBR2 CO_CONTROL PPP2CB -TGFBR2 CO_CONTROL SMAD7 -TGFBR2 CO_CONTROL STRAP -TGFBR2 CO_CONTROL TGFB1 -TGFBR2 CO_CONTROL TGFBR1 -TGFBR2 CO_CONTROL TGFBR2 -TGFBR2 CO_CONTROL ZFYVE9 -TGFBR2 IN_SAME_COMPONENT ACVRL1 -TGFBR2 IN_SAME_COMPONENT CAV1 -TGFBR2 IN_SAME_COMPONENT CSNK2B -TGFBR2 IN_SAME_COMPONENT DAB2 -TGFBR2 IN_SAME_COMPONENT DAXX -TGFBR2 IN_SAME_COMPONENT DYNLRB1 -TGFBR2 IN_SAME_COMPONENT GPC1 -TGFBR2 IN_SAME_COMPONENT ITGAV -TGFBR2 IN_SAME_COMPONENT ITGB3 -TGFBR2 IN_SAME_COMPONENT NEDD4L -TGFBR2 IN_SAME_COMPONENT OCLN -TGFBR2 IN_SAME_COMPONENT PARD6A -TGFBR2 IN_SAME_COMPONENT PPP1CA -TGFBR2 IN_SAME_COMPONENT PPP1R15A -TGFBR2 IN_SAME_COMPONENT PPP2R2A -TGFBR2 IN_SAME_COMPONENT SMAD2 -TGFBR2 IN_SAME_COMPONENT SMAD4 -TGFBR2 IN_SAME_COMPONENT SMAD7 -TGFBR2 IN_SAME_COMPONENT SMURF1 -TGFBR2 IN_SAME_COMPONENT STRAP -TGFBR2 IN_SAME_COMPONENT TGFB1 -TGFBR2 IN_SAME_COMPONENT TGFB3 -TGFBR2 IN_SAME_COMPONENT TGFBR1 -TGFBR2 IN_SAME_COMPONENT TGFBR3 -TGFBR2 IN_SAME_COMPONENT WWP1 -TGFBR2 IN_SAME_COMPONENT YAP1 -TGFBR2 IN_SAME_COMPONENT ZFYVE16 -TGFBR2 IN_SAME_COMPONENT ZFYVE9 -TGFBR2 REACTS_WITH ACVRL1 -TGFBR2 REACTS_WITH CAV1 -TGFBR2 REACTS_WITH CSNK2B -TGFBR2 REACTS_WITH DYNLRB1 -TGFBR2 REACTS_WITH FKBP1A -TGFBR2 REACTS_WITH GPC1 -TGFBR2 REACTS_WITH ITGAV -TGFBR2 REACTS_WITH ITGB3 -TGFBR2 REACTS_WITH NEDD4L -TGFBR2 REACTS_WITH OCLN -TGFBR2 REACTS_WITH PARD6A -TGFBR2 REACTS_WITH PPP1CA -TGFBR2 REACTS_WITH PPP1R15A -TGFBR2 REACTS_WITH PPP2R2A -TGFBR2 REACTS_WITH SMAD2 -TGFBR2 REACTS_WITH SMAD4 -TGFBR2 REACTS_WITH SMAD7 -TGFBR2 REACTS_WITH SMURF1 -TGFBR2 REACTS_WITH SMURF2 -TGFBR2 REACTS_WITH STRAP -TGFBR2 REACTS_WITH TGFB1 -TGFBR2 REACTS_WITH TGFB3 -TGFBR2 REACTS_WITH TGFBR1 -TGFBR2 REACTS_WITH TGFBR2 -TGFBR2 REACTS_WITH TGFBR3 -TGFBR2 REACTS_WITH TGFBRAP1 -TGFBR2 REACTS_WITH WWP1 -TGFBR2 REACTS_WITH YAP1 -TGFBR2 REACTS_WITH ZFYVE16 -TGFBR2 REACTS_WITH ZFYVE9 -TGFBR2 STATE_CHANGE AXIN1 -TGFBR2 STATE_CHANGE CTNNB1 -TGFBR2 STATE_CHANGE EIF2A -TGFBR2 STATE_CHANGE MAP3K7 -TGFBR2 STATE_CHANGE RPS6KB1 -TGFBR2 STATE_CHANGE SHC1 -TGFBR2 STATE_CHANGE SMAD2 -TGFBR2 STATE_CHANGE SMAD7 -TGFBR2 STATE_CHANGE SPTBN1 -TGFBR2 STATE_CHANGE STRAP -TGFBR2 STATE_CHANGE TGFBR1 -TGFBR2 STATE_CHANGE TGFBR2 -TGFBR2 STATE_CHANGE XIAP -TGFBR3 IN_SAME_COMPONENT ARRB2 -TGFBR3 IN_SAME_COMPONENT TGFBR2 -TGFBR3 REACTS_WITH ARRB2 -TGFBR3 REACTS_WITH FKBP1A -TGFBR3 REACTS_WITH OCLN -TGFBR3 REACTS_WITH PARD6A -TGFBR3 REACTS_WITH TGFBR1 -TGFBR3 REACTS_WITH TGFBR2 -TGFBR3 REACTS_WITH TGFBR3 -TGFBR3 REACTS_WITH TGFBRAP1 -TGFBRAP1 IN_SAME_COMPONENT SMAD4 -TGFBRAP1 IN_SAME_COMPONENT TGFBR1 -TGFBRAP1 REACTS_WITH SMAD2 -TGFBRAP1 REACTS_WITH SMAD4 -TGFBRAP1 REACTS_WITH TGFBR1 -TGFBRAP1 REACTS_WITH TGFBR2 -TGFBRAP1 REACTS_WITH TGFBR3 -TGFBRAP1 REACTS_WITH TGFBRAP1 -TGIF1 CO_CONTROL AR -TGIF1 CO_CONTROL CITED1 -TGIF1 IN_SAME_COMPONENT CTBP1 -TGIF1 IN_SAME_COMPONENT HDAC1 -TGIF1 IN_SAME_COMPONENT HDAC2 -TGIF1 IN_SAME_COMPONENT RBBP4 -TGIF1 IN_SAME_COMPONENT RBBP7 -TGIF1 IN_SAME_COMPONENT SAP18 -TGIF1 IN_SAME_COMPONENT SAP30 -TGIF1 IN_SAME_COMPONENT SIN3A -TGIF1 IN_SAME_COMPONENT SIN3B -TGIF1 METABOLIC_CATALYSIS KLK3 -TGIF1 STATE_CHANGE SMAD2 -TGIF1 STATE_CHANGE SMAD4 -TGIF2 IN_SAME_COMPONENT SMAD4 -TGIF2 REACTS_WITH SMAD4 -TGIF2 REACTS_WITH TGIF2 -TGM2 IN_SAME_COMPONENT GNG2 -TGM2 IN_SAME_COMPONENT ITGA4 -TGM2 IN_SAME_COMPONENT ITGA9 -TGM2 IN_SAME_COMPONENT ITGB1 -TGM2 REACTS_WITH GNG2 -TGM2 REACTS_WITH ITGA4 -TGM2 REACTS_WITH ITGA9 -TGM2 REACTS_WITH ITGB1 -TGM2 REACTS_WITH TGM2 -TGM2 STATE_CHANGE PLCB2 -THBS1 IN_SAME_COMPONENT CD47 -THBS1 IN_SAME_COMPONENT ITGA2B -THBS1 IN_SAME_COMPONENT ITGA3 -THBS1 IN_SAME_COMPONENT ITGA4 -THBS1 IN_SAME_COMPONENT ITGA6 -THBS1 IN_SAME_COMPONENT ITGB1 -THBS1 IN_SAME_COMPONENT ITGB3 -THBS1 IN_SAME_COMPONENT SDC4 -THBS1 REACTS_WITH CD47 -THBS1 REACTS_WITH ITGA2B -THBS1 REACTS_WITH ITGA3 -THBS1 REACTS_WITH ITGA4 -THBS1 REACTS_WITH ITGA6 -THBS1 REACTS_WITH ITGB1 -THBS1 REACTS_WITH ITGB3 -THBS1 REACTS_WITH SDC4 -THBS1 REACTS_WITH THBS1 -THBS1 REACTS_WITH VCAM1 -THBS2 IN_SAME_COMPONENT ITGA4 -THBS2 IN_SAME_COMPONENT ITGA6 -THBS2 IN_SAME_COMPONENT ITGB1 -THBS2 REACTS_WITH ITGA4 -THBS2 REACTS_WITH ITGA6 -THBS2 REACTS_WITH ITGB1 -THBS2 REACTS_WITH THBS2 -THY1 IN_SAME_COMPONENT ITGAM -THY1 IN_SAME_COMPONENT ITGAV -THY1 IN_SAME_COMPONENT ITGB2 -THY1 IN_SAME_COMPONENT ITGB3 -THY1 IN_SAME_COMPONENT SDC4 -THY1 REACTS_WITH ITGAM -THY1 REACTS_WITH ITGAV -THY1 REACTS_WITH ITGB2 -THY1 REACTS_WITH ITGB3 -THY1 REACTS_WITH SDC4 -THY1 REACTS_WITH THY1 -TIAM1 CO_CONTROL VAV2 -TIAM1 IN_SAME_COMPONENT EFNA1 -TIAM1 IN_SAME_COMPONENT EFNB1 -TIAM1 IN_SAME_COMPONENT EPHA2 -TIAM1 IN_SAME_COMPONENT NME1 -TIAM1 REACTS_WITH EFNA1 -TIAM1 REACTS_WITH EFNB1 -TIAM1 REACTS_WITH EPHA2 -TIAM1 REACTS_WITH NME1 -TIAM1 REACTS_WITH TIAM1 -TIAM1 STATE_CHANGE RAC1 -TIAM1 STATE_CHANGE RHOA -TIAM2 STATE_CHANGE RAC1 -TICAM1 IN_SAME_COMPONENT TLR3 -TICAM1 REACTS_WITH TICAM1 -TICAM1 REACTS_WITH TLR3 -TICAM2 IN_SAME_COMPONENT IL1B -TICAM2 IN_SAME_COMPONENT IL1R1 -TICAM2 IN_SAME_COMPONENT IRAK4 -TICAM2 STATE_CHANGE IRAK1 -TICAM2 STATE_CHANGE TRAF6 -TIMELESS IN_SAME_COMPONENT ATR -TIMELESS IN_SAME_COMPONENT ATRIP -TIMELESS IN_SAME_COMPONENT CEP164 -TIMELESS IN_SAME_COMPONENT CHEK1 -TIMELESS IN_SAME_COMPONENT CLSPN -TIMELESS IN_SAME_COMPONENT CRY2 -TIMELESS IN_SAME_COMPONENT HUS1 -TIMELESS IN_SAME_COMPONENT PER1 -TIMELESS IN_SAME_COMPONENT RAD1 -TIMELESS IN_SAME_COMPONENT RAD17 -TIMELESS IN_SAME_COMPONENT RAD9A -TIMELESS IN_SAME_COMPONENT RFC2 -TIMELESS IN_SAME_COMPONENT RFC3 -TIMELESS IN_SAME_COMPONENT RFC4 -TIMELESS IN_SAME_COMPONENT RFC5 -TIMELESS IN_SAME_COMPONENT RPA1 -TIMELESS IN_SAME_COMPONENT RPA2 -TIMELESS IN_SAME_COMPONENT TIPIN -TIMELESS IN_SAME_COMPONENT TOPBP1 -TIMELESS REACTS_WITH ATR -TIMELESS REACTS_WITH ATRIP -TIMELESS REACTS_WITH CEP164 -TIMELESS REACTS_WITH CHEK1 -TIMELESS REACTS_WITH CLSPN -TIMELESS REACTS_WITH CRY2 -TIMELESS REACTS_WITH HUS1 -TIMELESS REACTS_WITH PER1 -TIMELESS REACTS_WITH RAD1 -TIMELESS REACTS_WITH RAD17 -TIMELESS REACTS_WITH RAD9A -TIMELESS REACTS_WITH RFC2 -TIMELESS REACTS_WITH RFC3 -TIMELESS REACTS_WITH RFC4 -TIMELESS REACTS_WITH RFC5 -TIMELESS REACTS_WITH RPA1 -TIMELESS REACTS_WITH RPA2 -TIMELESS REACTS_WITH TIMELESS -TIMELESS REACTS_WITH TIPIN -TIMELESS REACTS_WITH TOPBP1 -TINF2 IN_SAME_COMPONENT ACD -TINF2 IN_SAME_COMPONENT POT1 -TINF2 IN_SAME_COMPONENT TERF1 -TINF2 REACTS_WITH ACD -TINF2 REACTS_WITH POT1 -TINF2 REACTS_WITH TERF1 -TINF2 REACTS_WITH TERF2 -TINF2 REACTS_WITH TERF2IP -TINF2 REACTS_WITH TINF2 -TIPIN IN_SAME_COMPONENT ATR -TIPIN IN_SAME_COMPONENT ATRIP -TIPIN IN_SAME_COMPONENT CEP164 -TIPIN IN_SAME_COMPONENT CHEK1 -TIPIN IN_SAME_COMPONENT CLSPN -TIPIN IN_SAME_COMPONENT HUS1 -TIPIN IN_SAME_COMPONENT RAD1 -TIPIN IN_SAME_COMPONENT RAD17 -TIPIN IN_SAME_COMPONENT RAD9A -TIPIN IN_SAME_COMPONENT RFC2 -TIPIN IN_SAME_COMPONENT RFC3 -TIPIN IN_SAME_COMPONENT RFC4 -TIPIN IN_SAME_COMPONENT RFC5 -TIPIN IN_SAME_COMPONENT RPA1 -TIPIN IN_SAME_COMPONENT RPA2 -TIPIN IN_SAME_COMPONENT TIMELESS -TIPIN IN_SAME_COMPONENT TOPBP1 -TIPIN REACTS_WITH ATR -TIPIN REACTS_WITH ATRIP -TIPIN REACTS_WITH CEP164 -TIPIN REACTS_WITH CHEK1 -TIPIN REACTS_WITH CLSPN -TIPIN REACTS_WITH HUS1 -TIPIN REACTS_WITH RAD1 -TIPIN REACTS_WITH RAD17 -TIPIN REACTS_WITH RAD9A -TIPIN REACTS_WITH RFC2 -TIPIN REACTS_WITH RFC3 -TIPIN REACTS_WITH RFC4 -TIPIN REACTS_WITH RFC5 -TIPIN REACTS_WITH RPA1 -TIPIN REACTS_WITH RPA2 -TIPIN REACTS_WITH TIMELESS -TIPIN REACTS_WITH TIPIN -TIPIN REACTS_WITH TOPBP1 -TIRAP IN_SAME_COMPONENT BGN -TIRAP IN_SAME_COMPONENT HMGB1 -TIRAP IN_SAME_COMPONENT HSPD1 -TIRAP IN_SAME_COMPONENT IRAK1 -TIRAP IN_SAME_COMPONENT IRAK2 -TIRAP IN_SAME_COMPONENT IRAK4 -TIRAP IN_SAME_COMPONENT LY96 -TIRAP IN_SAME_COMPONENT MYD88 -TIRAP IN_SAME_COMPONENT S100A8 -TIRAP IN_SAME_COMPONENT S100A9 -TIRAP IN_SAME_COMPONENT TLR1 -TIRAP IN_SAME_COMPONENT TLR2 -TIRAP IN_SAME_COMPONENT TLR4 -TIRAP REACTS_WITH BGN -TIRAP REACTS_WITH HMGB1 -TIRAP REACTS_WITH HSPD1 -TIRAP REACTS_WITH IRAK1 -TIRAP REACTS_WITH IRAK2 -TIRAP REACTS_WITH IRAK4 -TIRAP REACTS_WITH LY96 -TIRAP REACTS_WITH MYD88 -TIRAP REACTS_WITH S100A8 -TIRAP REACTS_WITH S100A9 -TIRAP REACTS_WITH TIRAP -TIRAP REACTS_WITH TLR1 -TIRAP REACTS_WITH TLR2 -TIRAP REACTS_WITH TLR4 -TIRAP STATE_CHANGE IRAK1 -TJP1 IN_SAME_COMPONENT KIRREL -TJP1 IN_SAME_COMPONENT NPHS1 -TJP1 REACTS_WITH KIRREL -TJP1 REACTS_WITH NPHS1 -TJP1 REACTS_WITH TJP1 -TJP2 IN_SAME_COMPONENT MAX -TJP2 IN_SAME_COMPONENT MYC -TJP2 IN_SAME_COMPONENT ZBTB17 -TJP2 REACTS_WITH MAX -TJP2 REACTS_WITH MYC -TJP2 REACTS_WITH TJP2 -TJP2 REACTS_WITH ZBTB17 -TLE1 CO_CONTROL CREBBP -TLE1 CO_CONTROL HES1 -TLE1 CO_CONTROL HES6 -TLE1 CO_CONTROL PARP1 -TLE1 IN_SAME_COMPONENT AES -TLE1 IN_SAME_COMPONENT CREBBP -TLE1 IN_SAME_COMPONENT CTBP1 -TLE1 IN_SAME_COMPONENT CTNNB1 -TLE1 IN_SAME_COMPONENT HDAC1 -TLE1 IN_SAME_COMPONENT HES1 -TLE1 IN_SAME_COMPONENT HNF1A -TLE1 IN_SAME_COMPONENT LEF1 -TLE1 IN_SAME_COMPONENT PARP1 -TLE1 IN_SAME_COMPONENT TCF4 -TLE1 METABOLIC_CATALYSIS ASCL1 -TLE1 METABOLIC_CATALYSIS CCND1 -TLE1 METABOLIC_CATALYSIS MYC -TLE1 METABOLIC_CATALYSIS PPARD -TLE1 METABOLIC_CATALYSIS RCAN1 -TLE1 REACTS_WITH AES -TLE1 REACTS_WITH CREBBP -TLE1 REACTS_WITH CTBP1 -TLE1 REACTS_WITH CTNNB1 -TLE1 REACTS_WITH HDAC1 -TLE1 REACTS_WITH HES1 -TLE1 REACTS_WITH HNF1A -TLE1 REACTS_WITH LEF1 -TLE1 REACTS_WITH PARP1 -TLE1 REACTS_WITH TBL1X -TLE1 REACTS_WITH TBL1XR1 -TLE1 REACTS_WITH TCF4 -TLE1 REACTS_WITH TLE1 -TLE2 IN_SAME_COMPONENT LEF1 -TLE2 IN_SAME_COMPONENT TCF7 -TLE2 IN_SAME_COMPONENT TCF7L1 -TLE2 IN_SAME_COMPONENT TCF7L2 -TLE2 REACTS_WITH CTNNB1 -TLE2 REACTS_WITH LEF1 -TLE2 REACTS_WITH TCF7 -TLE2 REACTS_WITH TCF7L1 -TLE2 REACTS_WITH TCF7L2 -TLE2 REACTS_WITH TLE2 -TLE4 IN_SAME_COMPONENT TCF7L2 -TLE4 REACTS_WITH CTNNB1 -TLE4 REACTS_WITH TCF7L2 -TLE4 REACTS_WITH TLE4 -TLN1 IN_SAME_COMPONENT ITGA4 -TLN1 IN_SAME_COMPONENT ITGAM -TLN1 IN_SAME_COMPONENT ITGAV -TLN1 IN_SAME_COMPONENT ITGB1 -TLN1 IN_SAME_COMPONENT ITGB2 -TLN1 IN_SAME_COMPONENT ITGB3 -TLN1 IN_SAME_COMPONENT PIP5K1C -TLN1 IN_SAME_COMPONENT PXN -TLN1 IN_SAME_COMPONENT VCAM1 -TLN1 IN_SAME_COMPONENT VCL -TLN1 REACTS_WITH ITGA4 -TLN1 REACTS_WITH ITGAM -TLN1 REACTS_WITH ITGAV -TLN1 REACTS_WITH ITGB1 -TLN1 REACTS_WITH ITGB2 -TLN1 REACTS_WITH ITGB3 -TLN1 REACTS_WITH PIP5K1C -TLN1 REACTS_WITH PXN -TLN1 REACTS_WITH TLN1 -TLN1 REACTS_WITH VCAM1 -TLN1 REACTS_WITH VCL -TLR1 IN_SAME_COMPONENT BGN -TLR1 IN_SAME_COMPONENT HMGB1 -TLR1 IN_SAME_COMPONENT HSPD1 -TLR1 IN_SAME_COMPONENT IRAK1 -TLR1 IN_SAME_COMPONENT IRAK2 -TLR1 IN_SAME_COMPONENT IRAK4 -TLR1 IN_SAME_COMPONENT LY96 -TLR1 IN_SAME_COMPONENT MYD88 -TLR1 IN_SAME_COMPONENT SAA1 -TLR1 IN_SAME_COMPONENT TIRAP -TLR1 IN_SAME_COMPONENT TLR2 -TLR1 IN_SAME_COMPONENT VCAN -TLR1 REACTS_WITH BGN -TLR1 REACTS_WITH HMGB1 -TLR1 REACTS_WITH HSPD1 -TLR1 REACTS_WITH IRAK1 -TLR1 REACTS_WITH IRAK2 -TLR1 REACTS_WITH IRAK4 -TLR1 REACTS_WITH LY96 -TLR1 REACTS_WITH MYD88 -TLR1 REACTS_WITH SAA1 -TLR1 REACTS_WITH TIRAP -TLR1 REACTS_WITH TLR1 -TLR1 REACTS_WITH TLR2 -TLR1 REACTS_WITH TLR6 -TLR1 REACTS_WITH VCAN -TLR2 IN_SAME_COMPONENT BGN -TLR2 IN_SAME_COMPONENT HMGB1 -TLR2 IN_SAME_COMPONENT HSPD1 -TLR2 IN_SAME_COMPONENT IRAK1 -TLR2 IN_SAME_COMPONENT IRAK2 -TLR2 IN_SAME_COMPONENT IRAK4 -TLR2 IN_SAME_COMPONENT LY96 -TLR2 IN_SAME_COMPONENT MYD88 -TLR2 IN_SAME_COMPONENT SAA1 -TLR2 IN_SAME_COMPONENT TIRAP -TLR2 IN_SAME_COMPONENT TLR1 -TLR2 IN_SAME_COMPONENT TLR6 -TLR2 IN_SAME_COMPONENT VCAN -TLR2 REACTS_WITH BGN -TLR2 REACTS_WITH HMGB1 -TLR2 REACTS_WITH HSPD1 -TLR2 REACTS_WITH IRAK1 -TLR2 REACTS_WITH IRAK2 -TLR2 REACTS_WITH IRAK4 -TLR2 REACTS_WITH LY96 -TLR2 REACTS_WITH MYD88 -TLR2 REACTS_WITH SAA1 -TLR2 REACTS_WITH TIRAP -TLR2 REACTS_WITH TLR1 -TLR2 REACTS_WITH TLR2 -TLR2 REACTS_WITH TLR6 -TLR2 REACTS_WITH VCAN -TLR3 IN_SAME_COMPONENT TICAM1 -TLR3 REACTS_WITH TICAM1 -TLR3 REACTS_WITH TLR3 -TLR4 IN_SAME_COMPONENT BGN -TLR4 IN_SAME_COMPONENT HMGB1 -TLR4 IN_SAME_COMPONENT HSPD1 -TLR4 IN_SAME_COMPONENT IRAK1 -TLR4 IN_SAME_COMPONENT IRAK2 -TLR4 IN_SAME_COMPONENT IRAK4 -TLR4 IN_SAME_COMPONENT LY96 -TLR4 IN_SAME_COMPONENT MYD88 -TLR4 IN_SAME_COMPONENT S100A8 -TLR4 IN_SAME_COMPONENT S100A9 -TLR4 IN_SAME_COMPONENT TIRAP -TLR4 REACTS_WITH BGN -TLR4 REACTS_WITH HMGB1 -TLR4 REACTS_WITH HSPD1 -TLR4 REACTS_WITH IRAK1 -TLR4 REACTS_WITH IRAK2 -TLR4 REACTS_WITH IRAK4 -TLR4 REACTS_WITH LY96 -TLR4 REACTS_WITH MYD88 -TLR4 REACTS_WITH S100A8 -TLR4 REACTS_WITH S100A9 -TLR4 REACTS_WITH TIRAP -TLR4 REACTS_WITH TLR4 -TLR4 STATE_CHANGE IRAK1 -TLR4 STATE_CHANGE RHOA -TLR6 IN_SAME_COMPONENT TLR2 -TLR6 REACTS_WITH TLR1 -TLR6 REACTS_WITH TLR2 -TLR6 REACTS_WITH TLR6 -TLR6 REACTS_WITH VCAN -TMF1 CO_CONTROL AR -TMF1 METABOLIC_CATALYSIS KLK3 -TNC IN_SAME_COMPONENT ITGA2 -TNC IN_SAME_COMPONENT ITGA7 -TNC IN_SAME_COMPONENT ITGA8 -TNC IN_SAME_COMPONENT ITGA9 -TNC IN_SAME_COMPONENT ITGB1 -TNC IN_SAME_COMPONENT PXN -TNC IN_SAME_COMPONENT SAT1 -TNC IN_SAME_COMPONENT SDC4 -TNC REACTS_WITH ITGA2 -TNC REACTS_WITH ITGA7 -TNC REACTS_WITH ITGA8 -TNC REACTS_WITH ITGA9 -TNC REACTS_WITH ITGAV -TNC REACTS_WITH ITGB1 -TNC REACTS_WITH ITGB3 -TNC REACTS_WITH PXN -TNC REACTS_WITH SAT1 -TNC REACTS_WITH SDC4 -TNC REACTS_WITH TNC -TNC STATE_CHANGE SRC -TNFAIP3 REACTS_WITH CHUK -TNFAIP3 REACTS_WITH IKBKB -TNFAIP3 REACTS_WITH IKBKG -TNFAIP3 REACTS_WITH RIPK2 -TNFAIP3 STATE_CHANGE RIPK1 -TNFAIP3 STATE_CHANGE TNF -TNFAIP3 STATE_CHANGE TNFRSF1A -TNFAIP3 STATE_CHANGE TRADD -TNFAIP3 STATE_CHANGE TRAF2 -TNF CO_CONTROL BIRC3 -TNF CO_CONTROL CASP6 -TNF CO_CONTROL CRADD -TNF CO_CONTROL CTSD -TNF CO_CONTROL MADD -TNF CO_CONTROL NSMAF -TNF CO_CONTROL RIPK1 -TNF CO_CONTROL TNF -TNF CO_CONTROL TNFRSF1A -TNF CO_CONTROL TRADD -TNF CO_CONTROL TRAF2 -TNF IN_SAME_COMPONENT BAG4 -TNF IN_SAME_COMPONENT BIRC2 -TNF IN_SAME_COMPONENT BIRC3 -TNF IN_SAME_COMPONENT CASP2 -TNF IN_SAME_COMPONENT CRADD -TNF IN_SAME_COMPONENT FADD -TNF IN_SAME_COMPONENT LRDD -TNF IN_SAME_COMPONENT MADD -TNF IN_SAME_COMPONENT MAP3K3 -TNF IN_SAME_COMPONENT MAP3K5 -TNF IN_SAME_COMPONENT MAP3K7 -TNF IN_SAME_COMPONENT NSMAF -TNF IN_SAME_COMPONENT RIPK1 -TNF IN_SAME_COMPONENT SMPD2 -TNF IN_SAME_COMPONENT SQSTM1 -TNF IN_SAME_COMPONENT STAT1 -TNF IN_SAME_COMPONENT TNFRSF1A -TNF IN_SAME_COMPONENT TNFRSF1B -TNF IN_SAME_COMPONENT TRADD -TNF IN_SAME_COMPONENT TRAF1 -TNF IN_SAME_COMPONENT TRAF2 -TNF METABOLIC_CATALYSIS ANGPT1 -TNF METABOLIC_CATALYSIS IL23A -TNF METABOLIC_CATALYSIS TFAP2A -TNF METABOLIC_CATALYSIS TNFAIP3 -TNF REACTS_WITH BAG4 -TNF REACTS_WITH BIRC2 -TNF REACTS_WITH BIRC3 -TNF REACTS_WITH CASP2 -TNF REACTS_WITH CRADD -TNF REACTS_WITH FADD -TNF REACTS_WITH MADD -TNF REACTS_WITH MAP3K3 -TNF REACTS_WITH MAP3K5 -TNF REACTS_WITH MAP3K7 -TNF REACTS_WITH NSMAF -TNF REACTS_WITH RIPK1 -TNF REACTS_WITH SMPD2 -TNF REACTS_WITH SQSTM1 -TNF REACTS_WITH STAT1 -TNF REACTS_WITH TNF -TNF REACTS_WITH TNFRSF1A -TNF REACTS_WITH TNFRSF1B -TNF REACTS_WITH TRADD -TNF REACTS_WITH TRAF1 -TNF REACTS_WITH TRAF2 -TNFRSF10A IN_SAME_COMPONENT DAP3 -TNFRSF10A IN_SAME_COMPONENT FADD -TNFRSF10A IN_SAME_COMPONENT RIPK1 -TNFRSF10A IN_SAME_COMPONENT TNFSF10 -TNFRSF10A IN_SAME_COMPONENT TRADD -TNFRSF10A IN_SAME_COMPONENT TRAF2 -TNFRSF10A REACTS_WITH DAP3 -TNFRSF10A REACTS_WITH FADD -TNFRSF10A REACTS_WITH RIPK1 -TNFRSF10A REACTS_WITH TNFRSF10A -TNFRSF10A REACTS_WITH TNFSF10 -TNFRSF10A REACTS_WITH TRADD -TNFRSF10A REACTS_WITH TRAF2 -TNFRSF10A STATE_CHANGE CASP10 -TNFRSF10A STATE_CHANGE CASP8 -TNFRSF10A STATE_CHANGE MAP3K1 -TNFRSF10B IN_SAME_COMPONENT FADD -TNFRSF10B IN_SAME_COMPONENT RIPK1 -TNFRSF10B IN_SAME_COMPONENT TNFSF10 -TNFRSF10B IN_SAME_COMPONENT TRADD -TNFRSF10B IN_SAME_COMPONENT TRAF2 -TNFRSF10B REACTS_WITH FADD -TNFRSF10B REACTS_WITH RIPK1 -TNFRSF10B REACTS_WITH TNFRSF10B -TNFRSF10B REACTS_WITH TNFSF10 -TNFRSF10B REACTS_WITH TRADD -TNFRSF10B REACTS_WITH TRAF2 -TNFRSF10B STATE_CHANGE CASP10 -TNFRSF10B STATE_CHANGE CASP8 -TNFRSF10B STATE_CHANGE MAP3K1 -TNFRSF10B STATE_CHANGE SMPD1 -TNFRSF10C IN_SAME_COMPONENT TNFSF10 -TNFRSF10C REACTS_WITH TNFRSF10C -TNFRSF10C REACTS_WITH TNFSF10 -TNFRSF10D IN_SAME_COMPONENT TNFSF10 -TNFRSF10D REACTS_WITH TNFRSF10D -TNFRSF10D REACTS_WITH TNFSF10 -TNFRSF10D STATE_CHANGE CASP10 -TNFRSF13B IN_SAME_COMPONENT SDC2 -TNFRSF13B IN_SAME_COMPONENT SDC4 -TNFRSF13B REACTS_WITH SDC2 -TNFRSF13B REACTS_WITH SDC4 -TNFRSF13B REACTS_WITH TNFRSF13B -TNFRSF1A CO_CONTROL BIRC3 -TNFRSF1A CO_CONTROL CRADD -TNFRSF1A CO_CONTROL CTSD -TNFRSF1A CO_CONTROL MADD -TNFRSF1A CO_CONTROL NSMAF -TNFRSF1A CO_CONTROL RIPK1 -TNFRSF1A CO_CONTROL TNF -TNFRSF1A CO_CONTROL TNFRSF1A -TNFRSF1A CO_CONTROL TRADD -TNFRSF1A CO_CONTROL TRAF2 -TNFRSF1A IN_SAME_COMPONENT BAG4 -TNFRSF1A IN_SAME_COMPONENT BIRC2 -TNFRSF1A IN_SAME_COMPONENT BIRC3 -TNFRSF1A IN_SAME_COMPONENT CASP2 -TNFRSF1A IN_SAME_COMPONENT CRADD -TNFRSF1A IN_SAME_COMPONENT FADD -TNFRSF1A IN_SAME_COMPONENT LRDD -TNFRSF1A IN_SAME_COMPONENT MADD -TNFRSF1A IN_SAME_COMPONENT MAP3K3 -TNFRSF1A IN_SAME_COMPONENT MAP3K5 -TNFRSF1A IN_SAME_COMPONENT MAP3K7 -TNFRSF1A IN_SAME_COMPONENT NSMAF -TNFRSF1A IN_SAME_COMPONENT RIPK1 -TNFRSF1A IN_SAME_COMPONENT SMPD2 -TNFRSF1A IN_SAME_COMPONENT SQSTM1 -TNFRSF1A IN_SAME_COMPONENT STAT1 -TNFRSF1A IN_SAME_COMPONENT TNF -TNFRSF1A IN_SAME_COMPONENT TRADD -TNFRSF1A IN_SAME_COMPONENT TRAF1 -TNFRSF1A IN_SAME_COMPONENT TRAF2 -TNFRSF1A METABOLIC_CATALYSIS TNFAIP3 -TNFRSF1A REACTS_WITH BAG4 -TNFRSF1A REACTS_WITH BIRC2 -TNFRSF1A REACTS_WITH BIRC3 -TNFRSF1A REACTS_WITH CASP2 -TNFRSF1A REACTS_WITH CRADD -TNFRSF1A REACTS_WITH FADD -TNFRSF1A REACTS_WITH MADD -TNFRSF1A REACTS_WITH MAP3K3 -TNFRSF1A REACTS_WITH MAP3K5 -TNFRSF1A REACTS_WITH MAP3K7 -TNFRSF1A REACTS_WITH NSMAF -TNFRSF1A REACTS_WITH RIPK1 -TNFRSF1A REACTS_WITH SMPD2 -TNFRSF1A REACTS_WITH SQSTM1 -TNFRSF1A REACTS_WITH STAT1 -TNFRSF1A REACTS_WITH TNF -TNFRSF1A REACTS_WITH TNFRSF1A -TNFRSF1A REACTS_WITH TNFRSF1B -TNFRSF1A REACTS_WITH TRADD -TNFRSF1A REACTS_WITH TRAF1 -TNFRSF1A REACTS_WITH TRAF2 -TNFRSF1A STATE_CHANGE BID -TNFRSF1A STATE_CHANGE CASP2 -TNFRSF1A STATE_CHANGE CASP8 -TNFRSF1A STATE_CHANGE CHUK -TNFRSF1A STATE_CHANGE FADD -TNFRSF1A STATE_CHANGE HDAC3 -TNFRSF1A STATE_CHANGE IKBKB -TNFRSF1A STATE_CHANGE IKBKG -TNFRSF1A STATE_CHANGE MAP2K3 -TNFRSF1A STATE_CHANGE MAP2K7 -TNFRSF1A STATE_CHANGE MAP3K14 -TNFRSF1A STATE_CHANGE MAP3K5 -TNFRSF1A STATE_CHANGE MAP4K4 -TNFRSF1A STATE_CHANGE NFKB1 -TNFRSF1A STATE_CHANGE NFKBIA -TNFRSF1A STATE_CHANGE PPARG -TNFRSF1A STATE_CHANGE RELA -TNFRSF1A STATE_CHANGE SMPD1 -TNFRSF1A STATE_CHANGE SMPD3 -TNFRSF1A STATE_CHANGE TNF -TNFRSF1A STATE_CHANGE TNFRSF1A -TNFRSF1A STATE_CHANGE TRADD -TNFRSF1A STATE_CHANGE TRAF2 -TNFRSF1A STATE_CHANGE TXN -TNFRSF1B IN_SAME_COMPONENT BIRC2 -TNFRSF1B IN_SAME_COMPONENT BIRC3 -TNFRSF1B IN_SAME_COMPONENT TNF -TNFRSF1B IN_SAME_COMPONENT TRAF1 -TNFRSF1B IN_SAME_COMPONENT TRAF2 -TNFRSF1B REACTS_WITH BIRC2 -TNFRSF1B REACTS_WITH BIRC3 -TNFRSF1B REACTS_WITH RIPK1 -TNFRSF1B REACTS_WITH TNF -TNFRSF1B REACTS_WITH TNFRSF1A -TNFRSF1B REACTS_WITH TNFRSF1B -TNFRSF1B REACTS_WITH TRADD -TNFRSF1B REACTS_WITH TRAF1 -TNFRSF1B REACTS_WITH TRAF2 -TNFSF10 IN_SAME_COMPONENT DAP3 -TNFSF10 IN_SAME_COMPONENT FADD -TNFSF10 IN_SAME_COMPONENT RIPK1 -TNFSF10 IN_SAME_COMPONENT TNFRSF10A -TNFSF10 IN_SAME_COMPONENT TNFRSF10B -TNFSF10 IN_SAME_COMPONENT TNFRSF10C -TNFSF10 IN_SAME_COMPONENT TNFRSF10D -TNFSF10 IN_SAME_COMPONENT TRADD -TNFSF10 IN_SAME_COMPONENT TRAF2 -TNFSF10 REACTS_WITH DAP3 -TNFSF10 REACTS_WITH FADD -TNFSF10 REACTS_WITH RIPK1 -TNFSF10 REACTS_WITH TNFRSF10A -TNFSF10 REACTS_WITH TNFRSF10B -TNFSF10 REACTS_WITH TNFRSF10C -TNFSF10 REACTS_WITH TNFRSF10D -TNFSF10 REACTS_WITH TNFSF10 -TNFSF10 REACTS_WITH TRADD -TNFSF10 REACTS_WITH TRAF2 -TNFSF10 STATE_CHANGE CASP10 -TNFSF10 STATE_CHANGE CASP8 -TNFSF10 STATE_CHANGE MAP3K1 -TNFSF10 STATE_CHANGE SMPD1 -TNF STATE_CHANGE BID -TNF STATE_CHANGE CASP2 -TNF STATE_CHANGE CASP8 -TNF STATE_CHANGE CHUK -TNF STATE_CHANGE FADD -TNF STATE_CHANGE HDAC3 -TNF STATE_CHANGE IKBKB -TNF STATE_CHANGE IKBKG -TNF STATE_CHANGE MAP2K3 -TNF STATE_CHANGE MAP2K7 -TNF STATE_CHANGE MAP3K14 -TNF STATE_CHANGE MAP3K5 -TNF STATE_CHANGE MAP4K4 -TNF STATE_CHANGE NFKB1 -TNF STATE_CHANGE NFKBIA -TNF STATE_CHANGE PPARG -TNF STATE_CHANGE RELA -TNF STATE_CHANGE SMPD1 -TNF STATE_CHANGE SMPD3 -TNF STATE_CHANGE TNF -TNF STATE_CHANGE TNFRSF1A -TNF STATE_CHANGE TRADD -TNF STATE_CHANGE TRAF2 -TNF STATE_CHANGE TXN -TNF STATE_CHANGE VCAM1 -TNIK IN_SAME_COMPONENT CTNNB1 -TNIK IN_SAME_COMPONENT TCF7L2 -TNIK METABOLIC_CATALYSIS AXIN2 -TNIK METABOLIC_CATALYSIS MYC -TNIK REACTS_WITH CTNNB1 -TNIK REACTS_WITH TCF7L2 -TNIK REACTS_WITH TNIK -TNIP2 IN_SAME_COMPONENT ANGPT1 -TNIP2 IN_SAME_COMPONENT TEK -TNIP2 REACTS_WITH ANGPT1 -TNIP2 REACTS_WITH TEK -TNIP2 REACTS_WITH TNIP2 -TNK2 IN_SAME_COMPONENT CDC42 -TNK2 REACTS_WITH CDC42 -TNK2 REACTS_WITH TNK2 -TNK2 STATE_CHANGE BCAR1 -TNKS IN_SAME_COMPONENT TERF1 -TNKS REACTS_WITH TERF1 -TNKS REACTS_WITH TNKS -TOLLIP IN_SAME_COMPONENT IL1A -TOLLIP IN_SAME_COMPONENT IL1B -TOLLIP IN_SAME_COMPONENT IL1R1 -TOLLIP IN_SAME_COMPONENT IRAK1 -TOLLIP IN_SAME_COMPONENT IRAK4 -TOLLIP IN_SAME_COMPONENT MYD88 -TOLLIP REACTS_WITH IL1A -TOLLIP REACTS_WITH IL1B -TOLLIP REACTS_WITH IL1R1 -TOLLIP REACTS_WITH IRAK1 -TOLLIP REACTS_WITH IRAK4 -TOLLIP REACTS_WITH MYD88 -TOLLIP REACTS_WITH TOLLIP -TOLLIP REACTS_WITH TRAF6 -TOP3A IN_SAME_COMPONENT BLM -TOP3A REACTS_WITH BLM -TOPBP1 CO_CONTROL E2F1 -TOPBP1 IN_SAME_COMPONENT ATR -TOPBP1 IN_SAME_COMPONENT ATRIP -TOPBP1 IN_SAME_COMPONENT BARD1 -TOPBP1 IN_SAME_COMPONENT BRCA1 -TOPBP1 IN_SAME_COMPONENT CDC6 -TOPBP1 IN_SAME_COMPONENT CEP164 -TOPBP1 IN_SAME_COMPONENT CHEK1 -TOPBP1 IN_SAME_COMPONENT CLSPN -TOPBP1 IN_SAME_COMPONENT E2F1 -TOPBP1 IN_SAME_COMPONENT HUS1 -TOPBP1 IN_SAME_COMPONENT RAD1 -TOPBP1 IN_SAME_COMPONENT RAD17 -TOPBP1 IN_SAME_COMPONENT RAD9A -TOPBP1 IN_SAME_COMPONENT RFC2 -TOPBP1 IN_SAME_COMPONENT RFC3 -TOPBP1 IN_SAME_COMPONENT RFC4 -TOPBP1 IN_SAME_COMPONENT RFC5 -TOPBP1 IN_SAME_COMPONENT RPA1 -TOPBP1 IN_SAME_COMPONENT RPA2 -TOPBP1 IN_SAME_COMPONENT SMARCAL1 -TOPBP1 IN_SAME_COMPONENT TIMELESS -TOPBP1 IN_SAME_COMPONENT TIPIN -TOPBP1 REACTS_WITH ATR -TOPBP1 REACTS_WITH ATRIP -TOPBP1 REACTS_WITH BARD1 -TOPBP1 REACTS_WITH BRCA1 -TOPBP1 REACTS_WITH CDC6 -TOPBP1 REACTS_WITH CEP164 -TOPBP1 REACTS_WITH CHEK1 -TOPBP1 REACTS_WITH CLSPN -TOPBP1 REACTS_WITH E2F1 -TOPBP1 REACTS_WITH HUS1 -TOPBP1 REACTS_WITH RAD1 -TOPBP1 REACTS_WITH RAD17 -TOPBP1 REACTS_WITH RAD9A -TOPBP1 REACTS_WITH RFC2 -TOPBP1 REACTS_WITH RFC3 -TOPBP1 REACTS_WITH RFC4 -TOPBP1 REACTS_WITH RFC5 -TOPBP1 REACTS_WITH RPA1 -TOPBP1 REACTS_WITH RPA2 -TOPBP1 REACTS_WITH SMARCAL1 -TOPBP1 REACTS_WITH TIMELESS -TOPBP1 REACTS_WITH TIPIN -TOPBP1 REACTS_WITH TOPBP1 -TOPBP1 STATE_CHANGE FANCD2 -TOPBP1 STATE_CHANGE MCM2 -TOPBP1 STATE_CHANGE MDM2 -TOPBP1 STATE_CHANGE NBN -TOR1A IN_SAME_COMPONENT SNCA -TOR1A METABOLIC_CATALYSIS SNCA -TOR1A REACTS_WITH SNCA -TOR1A REACTS_WITH TOR1A -TP53BP1 IN_SAME_COMPONENT ATM -TP53BP1 IN_SAME_COMPONENT BRCA1 -TP53BP1 IN_SAME_COMPONENT FAM175A -TP53BP1 IN_SAME_COMPONENT H2AFX -TP53BP1 IN_SAME_COMPONENT MDC1 -TP53BP1 IN_SAME_COMPONENT MRE11A -TP53BP1 IN_SAME_COMPONENT NBN -TP53BP1 IN_SAME_COMPONENT RAD50 -TP53BP1 IN_SAME_COMPONENT RNF8 -TP53BP1 IN_SAME_COMPONENT UIMC1 -TP53BP1 METABOLIC_CATALYSIS SMC3 -TP53BP1 REACTS_WITH ATM -TP53BP1 REACTS_WITH BRCA1 -TP53BP1 REACTS_WITH CTBP1 -TP53BP1 REACTS_WITH FAM175A -TP53BP1 REACTS_WITH H2AFX -TP53BP1 REACTS_WITH MDC1 -TP53BP1 REACTS_WITH MRE11A -TP53BP1 REACTS_WITH NBN -TP53BP1 REACTS_WITH RAD50 -TP53BP1 REACTS_WITH RBBP8 -TP53BP1 REACTS_WITH RNF8 -TP53BP1 REACTS_WITH TP53BP1 -TP53BP1 REACTS_WITH UIMC1 -TP53BP1 STATE_CHANGE CHEK2 -TP53BP1 STATE_CHANGE DCLRE1C -TP53BP1 STATE_CHANGE SMC1A -TP53BP1 STATE_CHANGE TRIM28 -TP53 CO_CONTROL CEBPZ -TP53 CO_CONTROL CSE1L -TP53 CO_CONTROL FOXA1 -TP53 CO_CONTROL HDAC2 -TP53 CO_CONTROL JMY -TP53 CO_CONTROL JUN -TP53 CO_CONTROL MDM2 -TP53 CO_CONTROL POU4F1 -TP53 CO_CONTROL POU4F2 -TP53 CO_CONTROL SMARCA4 -TP53 CO_CONTROL SMYD2 -TP53 CO_CONTROL SNAI2 -TP53 CO_CONTROL SP1 -TP53 CO_CONTROL TADA2B -TP53 CO_CONTROL TAF9 -TP53 CO_CONTROL TFDP1 -TP53 CO_CONTROL TP53 -TP53 CO_CONTROL TRRAP -TP53 CO_CONTROL UBE2D1 -TP53 CO_CONTROL ZNF385A -TP53 IN_SAME_COMPONENT BAK1 -TP53 IN_SAME_COMPONENT BARD1 -TP53 IN_SAME_COMPONENT BRCA1 -TP53 IN_SAME_COMPONENT CARM1 -TP53 IN_SAME_COMPONENT DDX5 -TP53 IN_SAME_COMPONENT DGCR8 -TP53 IN_SAME_COMPONENT DROSHA -TP53 IN_SAME_COMPONENT HIF1A -TP53 IN_SAME_COMPONENT NEDD8 -TP53 IN_SAME_COMPONENT NFYA -TP53 IN_SAME_COMPONENT NFYB -TP53 IN_SAME_COMPONENT NFYC -TP53 IN_SAME_COMPONENT PIN1 -TP53 IN_SAME_COMPONENT PRKDC -TP53 IN_SAME_COMPONENT PRMT1 -TP53 IN_SAME_COMPONENT SIRT1 -TP53 IN_SAME_COMPONENT SP1 -TP53 IN_SAME_COMPONENT XRCC5 -TP53 IN_SAME_COMPONENT XRCC6 -TP53 METABOLIC_CATALYSIS AFP -TP53 METABOLIC_CATALYSIS AIFM2 -TP53 METABOLIC_CATALYSIS APAF1 -TP53 METABOLIC_CATALYSIS APC -TP53 METABOLIC_CATALYSIS ARID3A -TP53 METABOLIC_CATALYSIS ATF3 -TP53 METABOLIC_CATALYSIS BAX -TP53 METABOLIC_CATALYSIS BBC3 -TP53 METABOLIC_CATALYSIS BCL2 -TP53 METABOLIC_CATALYSIS BCL2L14 -TP53 METABOLIC_CATALYSIS BCL6 -TP53 METABOLIC_CATALYSIS BDKRB2 -TP53 METABOLIC_CATALYSIS BID -TP53 METABOLIC_CATALYSIS BNIP3L -TP53 METABOLIC_CATALYSIS BTG2 -TP53 METABOLIC_CATALYSIS CASP1 -TP53 METABOLIC_CATALYSIS CASP10 -TP53 METABOLIC_CATALYSIS CASP6 -TP53 METABOLIC_CATALYSIS CAV1 -TP53 METABOLIC_CATALYSIS CCNB1 -TP53 METABOLIC_CATALYSIS CCNG1 -TP53 METABOLIC_CATALYSIS CCNK -TP53 METABOLIC_CATALYSIS CD82 -TP53 METABOLIC_CATALYSIS CDKN1A -TP53 METABOLIC_CATALYSIS COL18A1 -TP53 METABOLIC_CATALYSIS CTSD -TP53 METABOLIC_CATALYSIS CX3CL1 -TP53 METABOLIC_CATALYSIS DDB2 -TP53 METABOLIC_CATALYSIS DDIT4 -TP53 METABOLIC_CATALYSIS DKK1 -TP53 METABOLIC_CATALYSIS DUSP1 -TP53 METABOLIC_CATALYSIS DUSP5 -TP53 METABOLIC_CATALYSIS EDN2 -TP53 METABOLIC_CATALYSIS EGFR -TP53 METABOLIC_CATALYSIS EPHA2 -TP53 METABOLIC_CATALYSIS FAS -TP53 METABOLIC_CATALYSIS FDXR -TP53 METABOLIC_CATALYSIS GADD45A -TP53 METABOLIC_CATALYSIS GDF15 -TP53 METABOLIC_CATALYSIS GPX1 -TP53 METABOLIC_CATALYSIS HGF -TP53 METABOLIC_CATALYSIS HIC1 -TP53 METABOLIC_CATALYSIS HTT -TP53 METABOLIC_CATALYSIS IGFBP3 -TP53 METABOLIC_CATALYSIS IRF5 -TP53 METABOLIC_CATALYSIS LIF -TP53 METABOLIC_CATALYSIS LRDD -TP53 METABOLIC_CATALYSIS MAP4K4 -TP53 METABOLIC_CATALYSIS MDM2 -TP53 METABOLIC_CATALYSIS MET -TP53 METABOLIC_CATALYSIS MLH1 -TP53 METABOLIC_CATALYSIS MMP2 -TP53 METABOLIC_CATALYSIS MSH2 -TP53 METABOLIC_CATALYSIS NDRG1 -TP53 METABOLIC_CATALYSIS NLRC4 -TP53 METABOLIC_CATALYSIS PCBP4 -TP53 METABOLIC_CATALYSIS PCNA -TP53 METABOLIC_CATALYSIS PERP -TP53 METABOLIC_CATALYSIS PLK3 -TP53 METABOLIC_CATALYSIS PMAIP1 -TP53 METABOLIC_CATALYSIS PMS2 -TP53 METABOLIC_CATALYSIS PPM1J -TP53 METABOLIC_CATALYSIS PRDM1 -TP53 METABOLIC_CATALYSIS PRKAB1 -TP53 METABOLIC_CATALYSIS PTEN -TP53 METABOLIC_CATALYSIS PYCARD -TP53 METABOLIC_CATALYSIS RB1 -TP53 METABOLIC_CATALYSIS RCHY1 -TP53 METABOLIC_CATALYSIS RFWD2 -TP53 METABOLIC_CATALYSIS RGC32 -TP53 METABOLIC_CATALYSIS RNF144B -TP53 METABOLIC_CATALYSIS RPS27L -TP53 METABOLIC_CATALYSIS RRM2B -TP53 METABOLIC_CATALYSIS S100A2 -TP53 METABOLIC_CATALYSIS SCN3B -TP53 METABOLIC_CATALYSIS SERPINB5 -TP53 METABOLIC_CATALYSIS SERPINE1 -TP53 METABOLIC_CATALYSIS SESN1 -TP53 METABOLIC_CATALYSIS SFN -TP53 METABOLIC_CATALYSIS SH2D1A -TP53 METABOLIC_CATALYSIS SNAI2 -TP53 METABOLIC_CATALYSIS SPP1 -TP53 METABOLIC_CATALYSIS STEAP3 -TP53 METABOLIC_CATALYSIS TAP1 -TP53 METABOLIC_CATALYSIS TGFA -TP53 METABOLIC_CATALYSIS TIGAR -TP53 METABOLIC_CATALYSIS TNFRSF10A -TP53 METABOLIC_CATALYSIS TNFRSF10B -TP53 METABOLIC_CATALYSIS TNFRSF10C -TP53 METABOLIC_CATALYSIS TNFRSF10D -TP53 METABOLIC_CATALYSIS TP53 -TP53 METABOLIC_CATALYSIS TP53AIP1 -TP53 METABOLIC_CATALYSIS TP53I3 -TP53 METABOLIC_CATALYSIS TP53INP1 -TP53 METABOLIC_CATALYSIS TP63 -TP53 METABOLIC_CATALYSIS TP73 -TP53 METABOLIC_CATALYSIS TRIAP1 -TP53 METABOLIC_CATALYSIS TSC2 -TP53 METABOLIC_CATALYSIS TYRP1 -TP53 METABOLIC_CATALYSIS VCAN -TP53 METABOLIC_CATALYSIS VDR -TP53 REACTS_WITH BAK1 -TP53 REACTS_WITH BARD1 -TP53 REACTS_WITH BBC3 -TP53 REACTS_WITH BRCA1 -TP53 REACTS_WITH CARM1 -TP53 REACTS_WITH COPS5 -TP53 REACTS_WITH DDX5 -TP53 REACTS_WITH DGCR8 -TP53 REACTS_WITH DROSHA -TP53 REACTS_WITH HIF1A -TP53 REACTS_WITH MCL1 -TP53 REACTS_WITH NEDD8 -TP53 REACTS_WITH NFYA -TP53 REACTS_WITH NFYB -TP53 REACTS_WITH NFYC -TP53 REACTS_WITH PIN1 -TP53 REACTS_WITH PRKDC -TP53 REACTS_WITH PRMT1 -TP53 REACTS_WITH SIRT1 -TP53 REACTS_WITH SP1 -TP53 REACTS_WITH TP53 -TP53 REACTS_WITH XRCC5 -TP53 REACTS_WITH XRCC6 -TP53 STATE_CHANGE BAX -TP53 STATE_CHANGE TP53 -TPX2 IN_SAME_COMPONENT AURKA -TPX2 INTERACTS_WITH DLGAP5 -TPX2 REACTS_WITH AURKA -TPX2 REACTS_WITH TPX2 -TRADD CO_CONTROL CTSD -TRADD CO_CONTROL NSMAF -TRADD CO_CONTROL TNF -TRADD CO_CONTROL TNFRSF1A -TRADD IN_SAME_COMPONENT BIRC2 -TRADD IN_SAME_COMPONENT BIRC3 -TRADD IN_SAME_COMPONENT CASP2 -TRADD IN_SAME_COMPONENT CRADD -TRADD IN_SAME_COMPONENT FADD -TRADD IN_SAME_COMPONENT LRDD -TRADD IN_SAME_COMPONENT MADD -TRADD IN_SAME_COMPONENT MAP3K3 -TRADD IN_SAME_COMPONENT MAP3K5 -TRADD IN_SAME_COMPONENT MAP3K7 -TRADD IN_SAME_COMPONENT RIPK1 -TRADD IN_SAME_COMPONENT SQSTM1 -TRADD IN_SAME_COMPONENT STAT1 -TRADD IN_SAME_COMPONENT TNF -TRADD IN_SAME_COMPONENT TNFRSF10A -TRADD IN_SAME_COMPONENT TNFRSF10B -TRADD IN_SAME_COMPONENT TNFRSF1A -TRADD IN_SAME_COMPONENT TNFSF10 -TRADD IN_SAME_COMPONENT TRAF1 -TRADD IN_SAME_COMPONENT TRAF2 -TRADD REACTS_WITH BAG4 -TRADD REACTS_WITH BIRC2 -TRADD REACTS_WITH BIRC3 -TRADD REACTS_WITH CASP2 -TRADD REACTS_WITH CRADD -TRADD REACTS_WITH FADD -TRADD REACTS_WITH MADD -TRADD REACTS_WITH MAP3K3 -TRADD REACTS_WITH MAP3K5 -TRADD REACTS_WITH MAP3K7 -TRADD REACTS_WITH RIPK1 -TRADD REACTS_WITH SQSTM1 -TRADD REACTS_WITH STAT1 -TRADD REACTS_WITH TNF -TRADD REACTS_WITH TNFRSF10A -TRADD REACTS_WITH TNFRSF10B -TRADD REACTS_WITH TNFRSF1A -TRADD REACTS_WITH TNFRSF1B -TRADD REACTS_WITH TNFSF10 -TRADD REACTS_WITH TRADD -TRADD REACTS_WITH TRAF1 -TRADD REACTS_WITH TRAF2 -TRADD STATE_CHANGE BID -TRADD STATE_CHANGE CASP2 -TRADD STATE_CHANGE CASP8 -TRADD STATE_CHANGE FADD -TRADD STATE_CHANGE MAP2K3 -TRADD STATE_CHANGE MAP2K7 -TRADD STATE_CHANGE MAP3K1 -TRADD STATE_CHANGE MAP3K14 -TRADD STATE_CHANGE MAP3K5 -TRADD STATE_CHANGE MAP4K4 -TRADD STATE_CHANGE NFKB1 -TRADD STATE_CHANGE RELA -TRADD STATE_CHANGE SMPD1 -TRADD STATE_CHANGE SMPD3 -TRADD STATE_CHANGE TNF -TRADD STATE_CHANGE TNFRSF1A -TRADD STATE_CHANGE TRADD -TRADD STATE_CHANGE TRAF2 -TRADD STATE_CHANGE TXN -TRAF1 IN_SAME_COMPONENT BIRC2 -TRAF1 IN_SAME_COMPONENT BIRC3 -TRAF1 IN_SAME_COMPONENT CASP2 -TRAF1 IN_SAME_COMPONENT CD40 -TRAF1 IN_SAME_COMPONENT CD40LG -TRAF1 IN_SAME_COMPONENT CRADD -TRAF1 IN_SAME_COMPONENT FADD -TRAF1 IN_SAME_COMPONENT MAP3K5 -TRAF1 IN_SAME_COMPONENT RIPK1 -TRAF1 IN_SAME_COMPONENT TNF -TRAF1 IN_SAME_COMPONENT TNFRSF1A -TRAF1 IN_SAME_COMPONENT TNFRSF1B -TRAF1 IN_SAME_COMPONENT TRADD -TRAF1 IN_SAME_COMPONENT TRAF2 -TRAF1 REACTS_WITH BAG4 -TRAF1 REACTS_WITH BIRC2 -TRAF1 REACTS_WITH BIRC3 -TRAF1 REACTS_WITH CASP2 -TRAF1 REACTS_WITH CD40 -TRAF1 REACTS_WITH CD40LG -TRAF1 REACTS_WITH CRADD -TRAF1 REACTS_WITH FADD -TRAF1 REACTS_WITH MAP3K5 -TRAF1 REACTS_WITH RIPK1 -TRAF1 REACTS_WITH TNF -TRAF1 REACTS_WITH TNFRSF1A -TRAF1 REACTS_WITH TNFRSF1B -TRAF1 REACTS_WITH TRADD -TRAF1 REACTS_WITH TRAF1 -TRAF1 REACTS_WITH TRAF2 -TRAF1 STATE_CHANGE MAP2K7 -TRAF1 STATE_CHANGE MAP3K14 -TRAF1 STATE_CHANGE NFKB1 -TRAF1 STATE_CHANGE NFKBIA -TRAF1 STATE_CHANGE RELA -TRAF2 CO_CONTROL CTSD -TRAF2 CO_CONTROL NSMAF -TRAF2 CO_CONTROL TNF -TRAF2 CO_CONTROL TNFRSF1A -TRAF2 IN_SAME_COMPONENT BIRC2 -TRAF2 IN_SAME_COMPONENT BIRC3 -TRAF2 IN_SAME_COMPONENT CASP2 -TRAF2 IN_SAME_COMPONENT CBLB -TRAF2 IN_SAME_COMPONENT CD40 -TRAF2 IN_SAME_COMPONENT CD40LG -TRAF2 IN_SAME_COMPONENT CRADD -TRAF2 IN_SAME_COMPONENT FADD -TRAF2 IN_SAME_COMPONENT LRDD -TRAF2 IN_SAME_COMPONENT MADD -TRAF2 IN_SAME_COMPONENT MAP3K1 -TRAF2 IN_SAME_COMPONENT MAP3K3 -TRAF2 IN_SAME_COMPONENT MAP3K5 -TRAF2 IN_SAME_COMPONENT MAP3K7 -TRAF2 IN_SAME_COMPONENT RIPK1 -TRAF2 IN_SAME_COMPONENT SQSTM1 -TRAF2 IN_SAME_COMPONENT TNF -TRAF2 IN_SAME_COMPONENT TNFRSF10A -TRAF2 IN_SAME_COMPONENT TNFRSF10B -TRAF2 IN_SAME_COMPONENT TNFRSF1A -TRAF2 IN_SAME_COMPONENT TNFRSF1B -TRAF2 IN_SAME_COMPONENT TNFSF10 -TRAF2 IN_SAME_COMPONENT TRADD -TRAF2 IN_SAME_COMPONENT TRAF1 -TRAF2 IN_SAME_COMPONENT TRAF3 -TRAF2 REACTS_WITH BAG4 -TRAF2 REACTS_WITH BIRC2 -TRAF2 REACTS_WITH BIRC3 -TRAF2 REACTS_WITH CASP2 -TRAF2 REACTS_WITH CBLB -TRAF2 REACTS_WITH CD40 -TRAF2 REACTS_WITH CD40LG -TRAF2 REACTS_WITH CRADD -TRAF2 REACTS_WITH FADD -TRAF2 REACTS_WITH MADD -TRAF2 REACTS_WITH MAP3K1 -TRAF2 REACTS_WITH MAP3K3 -TRAF2 REACTS_WITH MAP3K5 -TRAF2 REACTS_WITH MAP3K7 -TRAF2 REACTS_WITH RIPK1 -TRAF2 REACTS_WITH SQSTM1 -TRAF2 REACTS_WITH STAT1 -TRAF2 REACTS_WITH TNF -TRAF2 REACTS_WITH TNFRSF10A -TRAF2 REACTS_WITH TNFRSF10B -TRAF2 REACTS_WITH TNFRSF1A -TRAF2 REACTS_WITH TNFRSF1B -TRAF2 REACTS_WITH TNFSF10 -TRAF2 REACTS_WITH TRADD -TRAF2 REACTS_WITH TRAF1 -TRAF2 REACTS_WITH TRAF2 -TRAF2 REACTS_WITH TRAF3 -TRAF2 REACTS_WITH TRAF6 -TRAF2 REACTS_WITH TXN -TRAF2 STATE_CHANGE BID -TRAF2 STATE_CHANGE CASP2 -TRAF2 STATE_CHANGE CASP8 -TRAF2 STATE_CHANGE FADD -TRAF2 STATE_CHANGE MAP2K3 -TRAF2 STATE_CHANGE MAP2K4 -TRAF2 STATE_CHANGE MAP2K6 -TRAF2 STATE_CHANGE MAP2K7 -TRAF2 STATE_CHANGE MAP3K1 -TRAF2 STATE_CHANGE MAP3K14 -TRAF2 STATE_CHANGE MAP3K5 -TRAF2 STATE_CHANGE MAP4K4 -TRAF2 STATE_CHANGE NFKB1 -TRAF2 STATE_CHANGE NFKBIA -TRAF2 STATE_CHANGE RELA -TRAF2 STATE_CHANGE SMPD1 -TRAF2 STATE_CHANGE SMPD3 -TRAF2 STATE_CHANGE TRAF3 -TRAF2 STATE_CHANGE TXN -TRAF3 IN_SAME_COMPONENT BIRC2 -TRAF3 IN_SAME_COMPONENT BIRC3 -TRAF3 IN_SAME_COMPONENT CD40 -TRAF3 IN_SAME_COMPONENT CD40LG -TRAF3 IN_SAME_COMPONENT TRAF2 -TRAF3 REACTS_WITH BIRC2 -TRAF3 REACTS_WITH BIRC3 -TRAF3 REACTS_WITH CD40 -TRAF3 REACTS_WITH CD40LG -TRAF3 REACTS_WITH TRAF2 -TRAF3 REACTS_WITH TRAF3 -TRAF3 STATE_CHANGE MAP3K14 -TRAF6 CO_CONTROL AKT1 -TRAF6 CO_CONTROL BCL10 -TRAF6 CO_CONTROL CARD11 -TRAF6 CO_CONTROL GAB2 -TRAF6 CO_CONTROL MALT1 -TRAF6 CO_CONTROL MAP3K7 -TRAF6 IN_SAME_COMPONENT BCL10 -TRAF6 IN_SAME_COMPONENT BDNF -TRAF6 IN_SAME_COMPONENT CARD11 -TRAF6 IN_SAME_COMPONENT CBLB -TRAF6 IN_SAME_COMPONENT CD40 -TRAF6 IN_SAME_COMPONENT CD40LG -TRAF6 IN_SAME_COMPONENT IRAK1 -TRAF6 IN_SAME_COMPONENT MALT1 -TRAF6 IN_SAME_COMPONENT MAP3K3 -TRAF6 IN_SAME_COMPONENT MAP3K5 -TRAF6 IN_SAME_COMPONENT MAP3K7 -TRAF6 IN_SAME_COMPONENT NGF -TRAF6 IN_SAME_COMPONENT NGFR -TRAF6 IN_SAME_COMPONENT NTF4 -TRAF6 IN_SAME_COMPONENT PDPK1 -TRAF6 IN_SAME_COMPONENT RIPK2 -TRAF6 IN_SAME_COMPONENT SORT1 -TRAF6 IN_SAME_COMPONENT SQSTM1 -TRAF6 IN_SAME_COMPONENT TAB1 -TRAF6 IN_SAME_COMPONENT TAB2 -TRAF6 IN_SAME_COMPONENT ZNF274 -TRAF6 REACTS_WITH BCL10 -TRAF6 REACTS_WITH BDNF -TRAF6 REACTS_WITH BEX1 -TRAF6 REACTS_WITH CARD11 -TRAF6 REACTS_WITH CBLB -TRAF6 REACTS_WITH CD40 -TRAF6 REACTS_WITH CD40LG -TRAF6 REACTS_WITH IL1A -TRAF6 REACTS_WITH IL1B -TRAF6 REACTS_WITH IL1R1 -TRAF6 REACTS_WITH IRAK1 -TRAF6 REACTS_WITH IRAK4 -TRAF6 REACTS_WITH MALT1 -TRAF6 REACTS_WITH MAP3K3 -TRAF6 REACTS_WITH MAP3K5 -TRAF6 REACTS_WITH MAP3K7 -TRAF6 REACTS_WITH MYD88 -TRAF6 REACTS_WITH NGF -TRAF6 REACTS_WITH NGFR -TRAF6 REACTS_WITH NTF4 -TRAF6 REACTS_WITH PDPK1 -TRAF6 REACTS_WITH RIPK2 -TRAF6 REACTS_WITH SORT1 -TRAF6 REACTS_WITH SQSTM1 -TRAF6 REACTS_WITH TAB1 -TRAF6 REACTS_WITH TAB2 -TRAF6 REACTS_WITH TOLLIP -TRAF6 REACTS_WITH TRAF2 -TRAF6 REACTS_WITH TRAF6 -TRAF6 REACTS_WITH TXN -TRAF6 REACTS_WITH ZNF274 -TRAF6 STATE_CHANGE AKT1 -TRAF6 STATE_CHANGE CHUK -TRAF6 STATE_CHANGE ERC1 -TRAF6 STATE_CHANGE IKBKB -TRAF6 STATE_CHANGE IKBKG -TRAF6 STATE_CHANGE MAP2K3 -TRAF6 STATE_CHANGE MAP2K6 -TRAF6 STATE_CHANGE MAP3K7 -TRAF6 STATE_CHANGE NFKB1 -TRAF6 STATE_CHANGE NFKBIA -TRAF6 STATE_CHANGE RELA -TRAF6 STATE_CHANGE TP53 -TRAPPC4 IN_SAME_COMPONENT SDC2 -TRAPPC4 REACTS_WITH SDC2 -TRAPPC4 REACTS_WITH TRAPPC4 -TRIM24 CO_CONTROL AR -TRIM24 CO_CONTROL NCOA2 -TRIM24 METABOLIC_CATALYSIS KLK3 -TRIM28 CO_CONTROL E2F1 -TRIM28 CO_CONTROL TFDP1 -TRIM28 IN_SAME_COMPONENT MDM2 -TRIM28 IN_SAME_COMPONENT MYB -TRIM28 IN_SAME_COMPONENT NCOR1 -TRIM28 IN_SAME_COMPONENT SIN3A -TRIM28 IN_SAME_COMPONENT SKI -TRIM28 METABOLIC_CATALYSIS CCND3 -TRIM28 METABOLIC_CATALYSIS CDKN1B -TRIM28 METABOLIC_CATALYSIS MYC -TRIM28 METABOLIC_CATALYSIS SIRT1 -TRIM28 REACTS_WITH MYB -TRIM28 REACTS_WITH NCOR1 -TRIM28 REACTS_WITH SIN3A -TRIM28 REACTS_WITH SKI -TRIM28 REACTS_WITH TRIM28 -TRIM28 STATE_CHANGE E2F1 -TRIM28 STATE_CHANGE HDAC1 -TRIM28 STATE_CHANGE TP53 -TRIO STATE_CHANGE RAC1 -TRIO STATE_CHANGE RHOA -TRIP10 CO_CONTROL CALM1 -TRIP10 CO_CONTROL STX4 -TRIP10 CO_CONTROL STXBP4 -TRIP10 CO_CONTROL VAMP2 -TRIP10 IN_SAME_COMPONENT RHOQ -TRIP10 REACTS_WITH EXOC1 -TRIP10 REACTS_WITH EXOC2 -TRIP10 REACTS_WITH EXOC3 -TRIP10 REACTS_WITH EXOC4 -TRIP10 REACTS_WITH EXOC5 -TRIP10 REACTS_WITH EXOC6 -TRIP10 REACTS_WITH EXOC7 -TRIP10 REACTS_WITH RHOQ -TRIP10 REACTS_WITH TRIP10 -TRIP10 STATE_CHANGE F2RL2 -TRIP10 STATE_CHANGE LNPEP -TRIP10 STATE_CHANGE PARD6A -TRIP10 STATE_CHANGE SLC2A4 -TRIP10 STATE_CHANGE VAMP2 -TRIP6 CO_CONTROL FOS -TRIP6 CO_CONTROL JUN -TRIP6 CO_CONTROL TRIP6 -TRIP6 IN_SAME_COMPONENT BCAR1 -TRIP6 IN_SAME_COMPONENT CRK -TRIP6 IN_SAME_COMPONENT FOS -TRIP6 IN_SAME_COMPONENT JUN -TRIP6 METABOLIC_CATALYSIS MMP1 -TRIP6 METABOLIC_CATALYSIS PLAU -TRIP6 REACTS_WITH BCAR1 -TRIP6 REACTS_WITH CRK -TRIP6 REACTS_WITH FOS -TRIP6 REACTS_WITH JUN -TRIP6 REACTS_WITH PTK2 -TRIP6 REACTS_WITH PXN -TRIP6 REACTS_WITH TRIP6 -TRPC6 INTERACTS_WITH EPO -TRPC6 INTERACTS_WITH EPOR -TRPC6 INTERACTS_WITH JAK2 -TRPV1 IN_SAME_COMPONENT NGF -TRPV1 IN_SAME_COMPONENT PLCG1 -TRPV1 REACTS_WITH NGF -TRPV1 REACTS_WITH PLCG1 -TRPV1 REACTS_WITH TRPV1 -TRPV6 IN_SAME_COMPONENT PTPN1 -TRPV6 REACTS_WITH PTPN1 -TRPV6 REACTS_WITH TRPV6 -TRRAP CO_CONTROL HDAC2 -TRRAP CO_CONTROL MAX -TRRAP CO_CONTROL MYC -TRRAP CO_CONTROL TP53 -TRRAP CO_CONTROL UBTF -TRRAP IN_SAME_COMPONENT ACTL6A -TRRAP IN_SAME_COMPONENT BTRC -TRRAP IN_SAME_COMPONENT CTNNB1 -TRRAP IN_SAME_COMPONENT CUL1 -TRRAP IN_SAME_COMPONENT E2F4 -TRRAP IN_SAME_COMPONENT KAT2A -TRRAP IN_SAME_COMPONENT KAT5 -TRRAP IN_SAME_COMPONENT MAX -TRRAP IN_SAME_COMPONENT MYC -TRRAP IN_SAME_COMPONENT RUVBL1 -TRRAP IN_SAME_COMPONENT RUVBL2 -TRRAP IN_SAME_COMPONENT SKP1 -TRRAP IN_SAME_COMPONENT SUPT3H -TRRAP IN_SAME_COMPONENT SUPT7L -TRRAP IN_SAME_COMPONENT TAF10 -TRRAP IN_SAME_COMPONENT TAF12 -TRRAP IN_SAME_COMPONENT TAF9 -TRRAP IN_SAME_COMPONENT TCF7L2 -TRRAP IN_SAME_COMPONENT TFDP2 -TRRAP METABOLIC_CATALYSIS CAD -TRRAP METABOLIC_CATALYSIS CCND2 -TRRAP METABOLIC_CATALYSIS CDK4 -TRRAP METABOLIC_CATALYSIS GPAM -TRRAP METABOLIC_CATALYSIS HSPD1 -TRRAP METABOLIC_CATALYSIS MDM2 -TRRAP METABOLIC_CATALYSIS MYC -TRRAP METABOLIC_CATALYSIS NCL -TRRAP METABOLIC_CATALYSIS NME1 -TRRAP METABOLIC_CATALYSIS PTMA -TRRAP METABOLIC_CATALYSIS TERT -TRRAP REACTS_WITH ACTL6A -TRRAP REACTS_WITH BTRC -TRRAP REACTS_WITH CTNNB1 -TRRAP REACTS_WITH CUL1 -TRRAP REACTS_WITH KAT2A -TRRAP REACTS_WITH KAT5 -TRRAP REACTS_WITH MAX -TRRAP REACTS_WITH MYC -TRRAP REACTS_WITH RUVBL1 -TRRAP REACTS_WITH RUVBL2 -TRRAP REACTS_WITH SKP1 -TRRAP REACTS_WITH SUPT3H -TRRAP REACTS_WITH SUPT7L -TRRAP REACTS_WITH TAF10 -TRRAP REACTS_WITH TAF12 -TRRAP REACTS_WITH TAF9 -TRRAP REACTS_WITH TCF7L2 -TRRAP REACTS_WITH TRRAP -TSC1 IN_SAME_COMPONENT IKBKB -TSC1 IN_SAME_COMPONENT TSC2 -TSC1 REACTS_WITH DDIT4 -TSC1 REACTS_WITH IKBKB -TSC1 REACTS_WITH TSC1 -TSC1 REACTS_WITH TSC2 -TSC1 STATE_CHANGE DEPTOR -TSC1 STATE_CHANGE MAPKAP1 -TSC1 STATE_CHANGE MLST8 -TSC1 STATE_CHANGE MTOR -TSC1 STATE_CHANGE RHEB -TSC1 STATE_CHANGE RICTOR -TSC2 IN_SAME_COMPONENT IKBKB -TSC2 IN_SAME_COMPONENT TSC1 -TSC2 REACTS_WITH DDIT4 -TSC2 REACTS_WITH IKBKB -TSC2 REACTS_WITH TSC1 -TSC2 REACTS_WITH TSC2 -TSC2 STATE_CHANGE DEPTOR -TSC2 STATE_CHANGE MAPKAP1 -TSC2 STATE_CHANGE MLST8 -TSC2 STATE_CHANGE MTOR -TSC2 STATE_CHANGE RHEB -TSC2 STATE_CHANGE RICTOR -TSG101 CO_CONTROL HGS -TSG101 CO_CONTROL VPS24 -TSG101 CO_CONTROL ZFYVE28 -TSG101 STATE_CHANGE EGF -TSG101 STATE_CHANGE EGFR -TSG101 STATE_CHANGE SOS1 -TTC5 IN_SAME_COMPONENT PRMT5 -TTC5 REACTS_WITH PRMT5 -TTC5 REACTS_WITH TTC5 -TTC5 STATE_CHANGE TP53 -TUBB2A IN_SAME_COMPONENT HDAC6 -TUBB2A IN_SAME_COMPONENT SIRT2 -TUBB2A REACTS_WITH HDAC6 -TUBB2A REACTS_WITH SIRT2 -TUBB2A REACTS_WITH TUBB2A -TUBG1 IN_SAME_COMPONENT NINL -TUBG1 REACTS_WITH NINL -TUBG1 REACTS_WITH TUBG1 -TWIST1 CO_CONTROL EP300 -TWIST1 CO_CONTROL NOTCH1 -TWIST1 CO_CONTROL RBPJ -TWIST1 METABOLIC_CATALYSIS HES1 -TXLNG CO_CONTROL FOSL1 -TXLNG CO_CONTROL JUN -TXLNG CO_CONTROL JUNB -TXLNG IN_SAME_COMPONENT FOSL1 -TXLNG METABOLIC_CATALYSIS MGP -TXLNG METABOLIC_CATALYSIS MMP9 -TXLNG REACTS_WITH FOSL1 -TXLNG REACTS_WITH TXLNG -TXN IN_SAME_COMPONENT MAP3K5 -TXN REACTS_WITH MAP3K5 -TXN REACTS_WITH TRAF2 -TXN REACTS_WITH TRAF6 -TXN REACTS_WITH TXN -TXN STATE_CHANGE PTPN1 -TYK2 CO_CONTROL EBI3 -TYK2 CO_CONTROL IL12A -TYK2 CO_CONTROL IL12B -TYK2 CO_CONTROL IL12RB1 -TYK2 CO_CONTROL IL12RB2 -TYK2 CO_CONTROL IL27 -TYK2 CO_CONTROL IL27RA -TYK2 CO_CONTROL IL6ST -TYK2 CO_CONTROL JAK2 -TYK2 CO_CONTROL TYK2 -TYK2 IN_SAME_COMPONENT EBI3 -TYK2 IN_SAME_COMPONENT IL12A -TYK2 IN_SAME_COMPONENT IL12B -TYK2 IN_SAME_COMPONENT IL12RB1 -TYK2 IN_SAME_COMPONENT IL12RB2 -TYK2 IN_SAME_COMPONENT IL23A -TYK2 IN_SAME_COMPONENT IL23R -TYK2 IN_SAME_COMPONENT IL27 -TYK2 IN_SAME_COMPONENT IL27RA -TYK2 IN_SAME_COMPONENT IL6 -TYK2 IN_SAME_COMPONENT IL6R -TYK2 IN_SAME_COMPONENT IL6ST -TYK2 IN_SAME_COMPONENT JAK2 -TYK2 IN_SAME_COMPONENT SOCS1 -TYK2 IN_SAME_COMPONENT SOCS3 -TYK2 IN_SAME_COMPONENT SPHK2 -TYK2 METABOLIC_CATALYSIS ALOX12B -TYK2 METABOLIC_CATALYSIS CCL2 -TYK2 METABOLIC_CATALYSIS CCL3 -TYK2 METABOLIC_CATALYSIS CCL4 -TYK2 METABOLIC_CATALYSIS CCR5 -TYK2 METABOLIC_CATALYSIS CD3E -TYK2 METABOLIC_CATALYSIS CD4 -TYK2 METABOLIC_CATALYSIS CXCL1 -TYK2 METABOLIC_CATALYSIS CXCL9 -TYK2 METABOLIC_CATALYSIS EOMES -TYK2 METABOLIC_CATALYSIS FASLG -TYK2 METABOLIC_CATALYSIS FOS -TYK2 METABOLIC_CATALYSIS GADD45B -TYK2 METABOLIC_CATALYSIS GADD45G -TYK2 METABOLIC_CATALYSIS GZMA -TYK2 METABOLIC_CATALYSIS GZMB -TYK2 METABOLIC_CATALYSIS IFNG -TYK2 METABOLIC_CATALYSIS IL19 -TYK2 METABOLIC_CATALYSIS IL1B -TYK2 METABOLIC_CATALYSIS IL1R1 -TYK2 METABOLIC_CATALYSIS IL2 -TYK2 METABOLIC_CATALYSIS IL23R -TYK2 METABOLIC_CATALYSIS IL24 -TYK2 METABOLIC_CATALYSIS IL6 -TYK2 METABOLIC_CATALYSIS ITGA3 -TYK2 METABOLIC_CATALYSIS MPO -TYK2 METABOLIC_CATALYSIS NOS2 -TYK2 METABOLIC_CATALYSIS TBX21 -TYK2 METABOLIC_CATALYSIS TNF -TYK2 REACTS_WITH EBI3 -TYK2 REACTS_WITH IL12A -TYK2 REACTS_WITH IL12B -TYK2 REACTS_WITH IL12RB1 -TYK2 REACTS_WITH IL12RB2 -TYK2 REACTS_WITH IL23A -TYK2 REACTS_WITH IL23R -TYK2 REACTS_WITH IL27 -TYK2 REACTS_WITH IL27RA -TYK2 REACTS_WITH IL6 -TYK2 REACTS_WITH IL6R -TYK2 REACTS_WITH IL6ST -TYK2 REACTS_WITH JAK2 -TYK2 REACTS_WITH SOCS1 -TYK2 REACTS_WITH SOCS3 -TYK2 REACTS_WITH SPHK2 -TYK2 REACTS_WITH TYK2 -TYK2 STATE_CHANGE LCK -TYK2 STATE_CHANGE NFKB1 -TYK2 STATE_CHANGE NFKB2 -TYK2 STATE_CHANGE NFKBIA -TYK2 STATE_CHANGE PIK3CA -TYK2 STATE_CHANGE PIK3R1 -TYK2 STATE_CHANGE RELA -TYK2 STATE_CHANGE RELB -TYK2 STATE_CHANGE STAT1 -TYK2 STATE_CHANGE STAT2 -TYK2 STATE_CHANGE STAT3 -TYK2 STATE_CHANGE STAT4 -TYK2 STATE_CHANGE STAT5A -TYK2 STATE_CHANGE STAT6 -UBA3 CO_CONTROL AR -UBA3 METABOLIC_CATALYSIS KLK3 -UBE2D1 CO_CONTROL MDM2 -UBE2D1 CO_CONTROL PIN1 -UBE2D1 CO_CONTROL TP53 -UBE2D1 IN_SAME_COMPONENT MDM2 -UBE2D1 IN_SAME_COMPONENT YY1 -UBE2D1 REACTS_WITH MDM2 -UBE2D1 REACTS_WITH UBE2D1 -UBE2D1 REACTS_WITH YY1 -UBE2D1 STATE_CHANGE TP53 -UBE2D3 IN_SAME_COMPONENT BARD1 -UBE2D3 IN_SAME_COMPONENT BIRC2 -UBE2D3 IN_SAME_COMPONENT BRCA1 -UBE2D3 REACTS_WITH BARD1 -UBE2D3 REACTS_WITH BRCA1 -UBE2D3 REACTS_WITH UBE2D3 -UBE2D3 STATE_CHANGE IKBKG -UBE2I CO_CONTROL HDAC3 -UBE2I CO_CONTROL HDAC4 -UBE2I CO_CONTROL NCOR2 -UBE2I IN_SAME_COMPONENT AR -UBE2I IN_SAME_COMPONENT HDAC4 -UBE2I IN_SAME_COMPONENT PIAS4 -UBE2I IN_SAME_COMPONENT RANBP2 -UBE2I IN_SAME_COMPONENT RANGAP1 -UBE2I IN_SAME_COMPONENT SMAD4 -UBE2I REACTS_WITH AR -UBE2I REACTS_WITH HDAC4 -UBE2I REACTS_WITH PIAS4 -UBE2I REACTS_WITH RANBP2 -UBE2I REACTS_WITH RANGAP1 -UBE2I REACTS_WITH SMAD4 -UBE2I REACTS_WITH UBE2I -UBE2I STATE_CHANGE HDAC1 -UBE2I STATE_CHANGE HDAC4 -UBE2I STATE_CHANGE MDM2 -UBE2I STATE_CHANGE MEF2C -UBE2I STATE_CHANGE MYB -UBE2I STATE_CHANGE RAN -UBE2I STATE_CHANGE XPO1 -UBE2L3 IN_SAME_COMPONENT BARD1 -UBE2L3 IN_SAME_COMPONENT BRCA1 -UBE2L3 REACTS_WITH BARD1 -UBE2L3 REACTS_WITH BRCA1 -UBE2L3 REACTS_WITH UBE2L3 -UBE2L3 STATE_CHANGE SNCA -UBE2N IN_SAME_COMPONENT UBE2V1 -UBE2N STATE_CHANGE ATM -UBE2N STATE_CHANGE H2AFX -UBE2N STATE_CHANGE IRAK1 -UBE2N STATE_CHANGE MAP3K7 -UBE2N STATE_CHANGE MDC1 -UBE2N STATE_CHANGE MRE11A -UBE2N STATE_CHANGE NBN -UBE2N STATE_CHANGE RAD50 -UBE2N STATE_CHANGE RNF8 -UBE2N STATE_CHANGE TAB1 -UBE2N STATE_CHANGE TAB2 -UBE2N STATE_CHANGE TRAF6 -UBE2V1 IN_SAME_COMPONENT UBE2N -UBE2V1 STATE_CHANGE IRAK1 -UBE2V1 STATE_CHANGE MAP3K7 -UBE2V1 STATE_CHANGE TAB1 -UBE2V1 STATE_CHANGE TAB2 -UBE2V1 STATE_CHANGE TRAF6 -UBE3A CO_CONTROL AR -UBE3A IN_SAME_COMPONENT HDAC1 -UBE3A IN_SAME_COMPONENT HDAC2 -UBE3A IN_SAME_COMPONENT RBBP4 -UBE3A IN_SAME_COMPONENT RBBP7 -UBE3A IN_SAME_COMPONENT SAP18 -UBE3A IN_SAME_COMPONENT SAP30 -UBE3A IN_SAME_COMPONENT SIN3A -UBE3A IN_SAME_COMPONENT SIN3B -UBE3A METABOLIC_CATALYSIS KLK3 -UBE3A METABOLIC_CATALYSIS TERT -UBE3A REACTS_WITH HDAC1 -UBE3A REACTS_WITH HDAC2 -UBE3A REACTS_WITH RBBP4 -UBE3A REACTS_WITH RBBP7 -UBE3A REACTS_WITH SAP18 -UBE3A REACTS_WITH SAP30 -UBE3A REACTS_WITH SIN3A -UBE3A REACTS_WITH SIN3B -UBE3A REACTS_WITH UBE3A -UBE3A STATE_CHANGE DKC1 -UBE3A STATE_CHANGE HSP90AA1 -UBE3A STATE_CHANGE PTGES3 -UBE3A STATE_CHANGE TERT -UBQLN1 IN_SAME_COMPONENT GNG2 -UBQLN1 REACTS_WITH GNG2 -UBQLN1 REACTS_WITH UBQLN1 -UBTF CO_CONTROL MAX -UBTF CO_CONTROL MYC -UBTF CO_CONTROL TRRAP -UCHL1 STATE_CHANGE SNCA -UIMC1 IN_SAME_COMPONENT ATM -UIMC1 IN_SAME_COMPONENT BRCA1 -UIMC1 IN_SAME_COMPONENT FAM175A -UIMC1 IN_SAME_COMPONENT H2AFX -UIMC1 IN_SAME_COMPONENT MDC1 -UIMC1 IN_SAME_COMPONENT MRE11A -UIMC1 IN_SAME_COMPONENT NBN -UIMC1 IN_SAME_COMPONENT RAD50 -UIMC1 IN_SAME_COMPONENT RNF8 -UIMC1 IN_SAME_COMPONENT TP53BP1 -UIMC1 REACTS_WITH ATM -UIMC1 REACTS_WITH BRCA1 -UIMC1 REACTS_WITH FAM175A -UIMC1 REACTS_WITH H2AFX -UIMC1 REACTS_WITH MDC1 -UIMC1 REACTS_WITH MRE11A -UIMC1 REACTS_WITH NBN -UIMC1 REACTS_WITH RAD50 -UIMC1 REACTS_WITH RNF8 -UIMC1 REACTS_WITH TP53BP1 -UIMC1 REACTS_WITH UIMC1 -UNC13B IN_SAME_COMPONENT RAB3GAP2 -UNC13B IN_SAME_COMPONENT RIMS1 -UNC13B REACTS_WITH RAB3GAP2 -UNC13B REACTS_WITH RIMS1 -UNC13B REACTS_WITH UNC13B -UNC13B STATE_CHANGE STX1A -UNC13B STATE_CHANGE VAMP2 -UNC5A IN_SAME_COMPONENT DCC -UNC5A IN_SAME_COMPONENT NTN1 -UNC5A REACTS_WITH DCC -UNC5A REACTS_WITH NTN1 -UNC5A REACTS_WITH UNC5A -UNC5A STATE_CHANGE RAC1 -UNC5A STATE_CHANGE RHOA -UNC5B IN_SAME_COMPONENT DCC -UNC5B IN_SAME_COMPONENT NTN1 -UNC5B REACTS_WITH DCC -UNC5B REACTS_WITH NTN1 -UNC5B REACTS_WITH UNC5B -UNC5B STATE_CHANGE DAPK1 -UNC5B STATE_CHANGE FYN -UNC5C IN_SAME_COMPONENT DCC -UNC5C IN_SAME_COMPONENT NTN1 -UNC5C REACTS_WITH DCC -UNC5C REACTS_WITH NTN1 -UNC5C REACTS_WITH UNC5C -USF2 IN_SAME_COMPONENT FOSL1 -USF2 METABOLIC_CATALYSIS HMOX1 -USF2 REACTS_WITH FOSL1 -USF2 REACTS_WITH USF2 -USO1 IN_SAME_COMPONENT GBF1 -USO1 IN_SAME_COMPONENT GOSR2 -USO1 REACTS_WITH CLTA -USO1 REACTS_WITH CLTB -USO1 REACTS_WITH COPA -USO1 REACTS_WITH GBF1 -USO1 REACTS_WITH GOSR2 -USO1 REACTS_WITH USO1 -USP6NL IN_SAME_COMPONENT ACTN4 -USP6NL IN_SAME_COMPONENT EPS8 -USP6NL IN_SAME_COMPONENT RAB5A -USP6NL REACTS_WITH ABI1 -USP6NL REACTS_WITH ACTN4 -USP6NL REACTS_WITH EPS8 -USP6NL REACTS_WITH RAB5A -USP6NL REACTS_WITH SOS1 -USP6NL REACTS_WITH USP6NL -USP6NL STATE_CHANGE RAB5A -USP7 CO_CONTROL RASSF1 -USP7 IN_SAME_COMPONENT DAXX -USP7 STATE_CHANGE FOXO4 -USP7 STATE_CHANGE MDM2 -USP7 STATE_CHANGE TP53 -USP8 STATE_CHANGE EGF -USP8 STATE_CHANGE EGFR -USP8 STATE_CHANGE RNF41 -VAMP2 CO_CONTROL CALM1 -VAMP2 CO_CONTROL RHOQ -VAMP2 CO_CONTROL TRIP10 -VAMP2 IN_SAME_COMPONENT LNPEP -VAMP2 IN_SAME_COMPONENT SLC2A4 -VAMP2 IN_SAME_COMPONENT STX1A -VAMP2 IN_SAME_COMPONENT STX4 -VAMP2 IN_SAME_COMPONENT STXBP4 -VAMP2 REACTS_WITH SLC2A4 -VAMP2 REACTS_WITH STX1A -VAMP2 REACTS_WITH VAMP2 -VAMP2 STATE_CHANGE LNPEP -VAMP2 STATE_CHANGE SLC2A4 -VAMP2 STATE_CHANGE SYT1 -VAMP2 STATE_CHANGE VAMP2 -VASP IN_SAME_COMPONENT CXCR2 -VASP IN_SAME_COMPONENT IL8 -VASP REACTS_WITH CXCR2 -VASP REACTS_WITH IL8 -VASP REACTS_WITH VASP -VAV1 CO_CONTROL GRAP2 -VAV1 CO_CONTROL ITK -VAV1 CO_CONTROL LCP2 -VAV1 CO_CONTROL PLCG1 -VAV1 CO_CONTROL VAV1 -VAV1 IN_SAME_COMPONENT CBL -VAV1 IN_SAME_COMPONENT CXCL12 -VAV1 IN_SAME_COMPONENT CXCR4 -VAV1 IN_SAME_COMPONENT GRAP2 -VAV1 IN_SAME_COMPONENT ITK -VAV1 IN_SAME_COMPONENT LCP2 -VAV1 IN_SAME_COMPONENT NCK1 -VAV1 IN_SAME_COMPONENT PLCG1 -VAV1 IN_SAME_COMPONENT SOCS1 -VAV1 REACTS_WITH CBL -VAV1 REACTS_WITH CXCL12 -VAV1 REACTS_WITH CXCR4 -VAV1 REACTS_WITH GRAP2 -VAV1 REACTS_WITH ITK -VAV1 REACTS_WITH LCP2 -VAV1 REACTS_WITH NCK1 -VAV1 REACTS_WITH PLCG1 -VAV1 REACTS_WITH SOCS1 -VAV1 REACTS_WITH VAV1 -VAV1 STATE_CHANGE CDC42 -VAV1 STATE_CHANGE HRAS -VAV1 STATE_CHANGE PLCG1 -VAV1 STATE_CHANGE PRKCQ -VAV1 STATE_CHANGE RAC1 -VAV1 STATE_CHANGE RHOA -VAV1 STATE_CHANGE WAS -VAV2 CO_CONTROL CD79A -VAV2 CO_CONTROL CD79B -VAV2 CO_CONTROL DAPP1 -VAV2 CO_CONTROL LYN -VAV2 CO_CONTROL NME1 -VAV2 CO_CONTROL PPP3CA -VAV2 CO_CONTROL PPP3CB -VAV2 CO_CONTROL PPP3CC -VAV2 CO_CONTROL SYK -VAV2 CO_CONTROL TIAM1 -VAV2 IN_SAME_COMPONENT TEC -VAV2 REACTS_WITH TEC -VAV2 REACTS_WITH VAV2 -VAV2 STATE_CHANGE CD19 -VAV2 STATE_CHANGE CDC42 -VAV2 STATE_CHANGE NFATC1 -VAV2 STATE_CHANGE PIK3CA -VAV2 STATE_CHANGE PIK3R1 -VAV2 STATE_CHANGE RAC1 -VAV2 STATE_CHANGE RHOA -VAV3 CO_CONTROL AR -VAV3 METABOLIC_CATALYSIS KLK3 -VAV3 STATE_CHANGE CDC42 -VAV3 STATE_CHANGE RAC1 -VAV3 STATE_CHANGE RHOA -VCAM1 CO_CONTROL PTPRA -VCAM1 IN_SAME_COMPONENT ABI1 -VCAM1 IN_SAME_COMPONENT ITGA4 -VCAM1 IN_SAME_COMPONENT ITGA9 -VCAM1 IN_SAME_COMPONENT ITGAD -VCAM1 IN_SAME_COMPONENT ITGB1 -VCAM1 IN_SAME_COMPONENT ITGB2 -VCAM1 IN_SAME_COMPONENT ITGB7 -VCAM1 IN_SAME_COMPONENT PXN -VCAM1 IN_SAME_COMPONENT TLN1 -VCAM1 REACTS_WITH ABI1 -VCAM1 REACTS_WITH ITGA4 -VCAM1 REACTS_WITH ITGA9 -VCAM1 REACTS_WITH ITGAD -VCAM1 REACTS_WITH ITGB1 -VCAM1 REACTS_WITH ITGB2 -VCAM1 REACTS_WITH ITGB7 -VCAM1 REACTS_WITH PXN -VCAM1 REACTS_WITH THBS1 -VCAM1 REACTS_WITH TLN1 -VCAM1 REACTS_WITH VCAM1 -VCAM1 STATE_CHANGE PTK2B -VCAM1 STATE_CHANGE SRC -VCAN IN_SAME_COMPONENT TLR1 -VCAN IN_SAME_COMPONENT TLR2 -VCAN REACTS_WITH TLR1 -VCAN REACTS_WITH TLR2 -VCAN REACTS_WITH TLR6 -VCAN REACTS_WITH VCAN -VCL IN_SAME_COMPONENT TLN1 -VCL INTERACTS_WITH ITGAV -VCL INTERACTS_WITH ITGB3 -VCL INTERACTS_WITH SDC1 -VCL REACTS_WITH TLN1 -VCL REACTS_WITH VCL -VDR IN_SAME_COMPONENT SMAD4 -VDR REACTS_WITH SMAD4 -VDR REACTS_WITH VDR -VEGFA CO_CONTROL S1PR3 -VEGFA IN_SAME_COMPONENT CBL -VEGFA IN_SAME_COMPONENT CD2AP -VEGFA IN_SAME_COMPONENT CDH5 -VEGFA IN_SAME_COMPONENT CTNNA1 -VEGFA IN_SAME_COMPONENT CTNNB1 -VEGFA IN_SAME_COMPONENT DNM2 -VEGFA IN_SAME_COMPONENT FLT1 -VEGFA IN_SAME_COMPONENT FYN -VEGFA IN_SAME_COMPONENT GPC1 -VEGFA IN_SAME_COMPONENT HSP90AA1 -VEGFA IN_SAME_COMPONENT IQGAP1 -VEGFA IN_SAME_COMPONENT ITGA9 -VEGFA IN_SAME_COMPONENT ITGAV -VEGFA IN_SAME_COMPONENT ITGB1 -VEGFA IN_SAME_COMPONENT ITGB3 -VEGFA IN_SAME_COMPONENT KDR -VEGFA IN_SAME_COMPONENT MYOF -VEGFA IN_SAME_COMPONENT NCK1 -VEGFA IN_SAME_COMPONENT PAK2 -VEGFA IN_SAME_COMPONENT PTPN11 -VEGFA IN_SAME_COMPONENT RHOA -VEGFA IN_SAME_COMPONENT ROCK1 -VEGFA IN_SAME_COMPONENT SH2D2A -VEGFA IN_SAME_COMPONENT SHB -VEGFA IN_SAME_COMPONENT SRC -VEGFA IN_SAME_COMPONENT VTN -VEGFA METABOLIC_CATALYSIS AKT3 -VEGFA METABOLIC_CATALYSIS S1PR1 -VEGFA REACTS_WITH CBL -VEGFA REACTS_WITH CD2AP -VEGFA REACTS_WITH CDH5 -VEGFA REACTS_WITH CTNNA1 -VEGFA REACTS_WITH CTNNB1 -VEGFA REACTS_WITH DNM2 -VEGFA REACTS_WITH FLT1 -VEGFA REACTS_WITH FYN -VEGFA REACTS_WITH GPC1 -VEGFA REACTS_WITH HSP90AA1 -VEGFA REACTS_WITH IQGAP1 -VEGFA REACTS_WITH ITGA9 -VEGFA REACTS_WITH ITGAV -VEGFA REACTS_WITH ITGB1 -VEGFA REACTS_WITH ITGB3 -VEGFA REACTS_WITH KDR -VEGFA REACTS_WITH MYOF -VEGFA REACTS_WITH NCK1 -VEGFA REACTS_WITH PAK2 -VEGFA REACTS_WITH PRKACA -VEGFA REACTS_WITH PTPN11 -VEGFA REACTS_WITH RHOA -VEGFA REACTS_WITH ROCK1 -VEGFA REACTS_WITH SH2D2A -VEGFA REACTS_WITH SHB -VEGFA REACTS_WITH SHC2 -VEGFA REACTS_WITH SRC -VEGFA REACTS_WITH VEGFA -VEGFA REACTS_WITH VTN -VEGFA STATE_CHANGE CBL -VEGFA STATE_CHANGE CDC42 -VEGFA STATE_CHANGE FES -VEGFA STATE_CHANGE GAB1 -VEGFA STATE_CHANGE IQGAP1 -VEGFA STATE_CHANGE KDR -VEGFA STATE_CHANGE NOS3 -VEGFA STATE_CHANGE PLCG1 -VEGFA STATE_CHANGE PRKACA -VEGFA STATE_CHANGE PTK2B -VEGFA STATE_CHANGE PTPN11 -VEGFA STATE_CHANGE PTPRJ -VEGFA STATE_CHANGE RHOA -VEGFA STATE_CHANGE SRC -VEGFA STATE_CHANGE VEGFA -VEGFB IN_SAME_COMPONENT FLT1 -VEGFB REACTS_WITH FLT1 -VEGFB REACTS_WITH VEGFB -VEGFB STATE_CHANGE RASA1 -VEGFC IN_SAME_COMPONENT ITGA9 -VEGFC IN_SAME_COMPONENT ITGB1 -VEGFC REACTS_WITH ITGA9 -VEGFC REACTS_WITH ITGB1 -VEGFC REACTS_WITH VEGFC -VHL IN_SAME_COMPONENT CUL2 -VHL IN_SAME_COMPONENT EPAS1 -VHL IN_SAME_COMPONENT HIF1A -VHL IN_SAME_COMPONENT RBX1 -VHL IN_SAME_COMPONENT TCEB1 -VHL IN_SAME_COMPONENT TCEB2 -VHL REACTS_WITH CUL2 -VHL REACTS_WITH EPAS1 -VHL REACTS_WITH HIF1A -VHL REACTS_WITH RBX1 -VHL REACTS_WITH TCEB1 -VHL REACTS_WITH TCEB2 -VHL REACTS_WITH VHL -VLDLR IN_SAME_COMPONENT DAB1 -VLDLR IN_SAME_COMPONENT FYN -VLDLR IN_SAME_COMPONENT PAFAH1B1 -VLDLR IN_SAME_COMPONENT PAFAH1B2 -VLDLR IN_SAME_COMPONENT PAFAH1B3 -VLDLR IN_SAME_COMPONENT PIK3CA -VLDLR IN_SAME_COMPONENT PIK3R1 -VLDLR IN_SAME_COMPONENT RELN -VLDLR INTERACTS_WITH DAB1 -VLDLR INTERACTS_WITH FYN -VLDLR INTERACTS_WITH LRP8 -VLDLR INTERACTS_WITH RELN -VLDLR REACTS_WITH DAB1 -VLDLR REACTS_WITH FYN -VLDLR REACTS_WITH LRP8 -VLDLR REACTS_WITH PAFAH1B1 -VLDLR REACTS_WITH PAFAH1B2 -VLDLR REACTS_WITH PAFAH1B3 -VLDLR REACTS_WITH PIK3CA -VLDLR REACTS_WITH PIK3R1 -VLDLR REACTS_WITH RELN -VLDLR REACTS_WITH VLDLR -VLDLR STATE_CHANGE AKT1 -VLDLR STATE_CHANGE CRKL -VLDLR STATE_CHANGE DAB1 -VLDLR STATE_CHANGE ITGA3 -VLDLR STATE_CHANGE ITGB1 -VLDLR STATE_CHANGE MAP1B -VLDLR STATE_CHANGE NCK2 -VLDLR STATE_CHANGE PAFAH1B1 -VLDLR STATE_CHANGE PLAU -VLDLR STATE_CHANGE PLAUR -VLDLR STATE_CHANGE RAPGEF1 -VLDLR STATE_CHANGE SERPINE1 -VPS24 CO_CONTROL HGS -VPS24 CO_CONTROL TSG101 -VPS24 CO_CONTROL ZFYVE28 -VPS24 STATE_CHANGE EGF -VPS24 STATE_CHANGE EGFR -VPS24 STATE_CHANGE SOS1 -VTN IN_SAME_COMPONENT HSP90AA1 -VTN IN_SAME_COMPONENT ITGA2B -VTN IN_SAME_COMPONENT ITGA3 -VTN IN_SAME_COMPONENT ITGA8 -VTN IN_SAME_COMPONENT ITGAV -VTN IN_SAME_COMPONENT ITGB1 -VTN IN_SAME_COMPONENT ITGB3 -VTN IN_SAME_COMPONENT ITGB5 -VTN IN_SAME_COMPONENT ITGB6 -VTN IN_SAME_COMPONENT ITGB8 -VTN IN_SAME_COMPONENT KDR -VTN IN_SAME_COMPONENT NCL -VTN IN_SAME_COMPONENT PLAU -VTN IN_SAME_COMPONENT PLAUR -VTN IN_SAME_COMPONENT SERPINE1 -VTN IN_SAME_COMPONENT VEGFA -VTN REACTS_WITH HSP90AA1 -VTN REACTS_WITH ITGA2B -VTN REACTS_WITH ITGA3 -VTN REACTS_WITH ITGA8 -VTN REACTS_WITH ITGAV -VTN REACTS_WITH ITGB1 -VTN REACTS_WITH ITGB3 -VTN REACTS_WITH ITGB5 -VTN REACTS_WITH ITGB6 -VTN REACTS_WITH ITGB8 -VTN REACTS_WITH KDR -VTN REACTS_WITH NCL -VTN REACTS_WITH PLAU -VTN REACTS_WITH PLAUR -VTN REACTS_WITH SERPINE1 -VTN REACTS_WITH VEGFA -VTN REACTS_WITH VTN -VTN STATE_CHANGE CDKN1B -VTN STATE_CHANGE F11R -VTN STATE_CHANGE HSP90AA1 -VTN STATE_CHANGE ILK -VTN STATE_CHANGE ITGAV -VTN STATE_CHANGE ITGB3 -VTN STATE_CHANGE KDR -VTN STATE_CHANGE PI4KA -VTN STATE_CHANGE PI4KB -VTN STATE_CHANGE PIK3C2A -VTN STATE_CHANGE PTK2B -VTN STATE_CHANGE RHOA -VTN STATE_CHANGE ROCK1 -VTN STATE_CHANGE SRC -VTN STATE_CHANGE VEGFA -WASF1 IN_SAME_COMPONENT ABI2 -WASF1 IN_SAME_COMPONENT C3orf10 -WASF1 IN_SAME_COMPONENT CYFIP2 -WASF1 IN_SAME_COMPONENT NCKAP1 -WASF2 IN_SAME_COMPONENT ABI1 -WASF2 IN_SAME_COMPONENT C3orf10 -WASF2 IN_SAME_COMPONENT CYFIP2 -WASF2 IN_SAME_COMPONENT NCKAP1 -WASF2 REACTS_WITH ABI1 -WASF2 REACTS_WITH C3orf10 -WASF2 REACTS_WITH CYFIP2 -WASF2 REACTS_WITH NCKAP1 -WASF2 REACTS_WITH WASF2 -WASF2 STATE_CHANGE DIAPH3 -WAS IN_SAME_COMPONENT CDC42 -WASL IN_SAME_COMPONENT ABI1 -WASL IN_SAME_COMPONENT BAIAP2 -WASL IN_SAME_COMPONENT CDC42 -WASL IN_SAME_COMPONENT EGF -WASL IN_SAME_COMPONENT EGFR -WASL IN_SAME_COMPONENT EPHB2 -WASL IN_SAME_COMPONENT GAB1 -WASL IN_SAME_COMPONENT HGF -WASL IN_SAME_COMPONENT ITSN1 -WASL IN_SAME_COMPONENT KIRREL -WASL IN_SAME_COMPONENT MET -WASL IN_SAME_COMPONENT NPHS1 -WASL IN_SAME_COMPONENT NPHS2 -WASL IN_SAME_COMPONENT PDGFB -WASL IN_SAME_COMPONENT PDGFRB -WASL REACTS_WITH ABI1 -WASL REACTS_WITH BAIAP2 -WASL REACTS_WITH CDC42 -WASL REACTS_WITH EGF -WASL REACTS_WITH EGFR -WASL REACTS_WITH EPHB2 -WASL REACTS_WITH GAB1 -WASL REACTS_WITH HGF -WASL REACTS_WITH ITSN1 -WASL REACTS_WITH KIRREL -WASL REACTS_WITH MET -WASL REACTS_WITH NPHS1 -WASL REACTS_WITH NPHS2 -WASL REACTS_WITH PDGFB -WASL REACTS_WITH PDGFRB -WASL REACTS_WITH WASL -WASL STATE_CHANGE ACTR3 -WASL STATE_CHANGE ARPC1B -WASL STATE_CHANGE ARPC2 -WASL STATE_CHANGE ARPC3 -WASL STATE_CHANGE ARPC5 -WASL STATE_CHANGE CDC42 -WASL STATE_CHANGE RAC1 -WAS REACTS_WITH CDC42 -WAS REACTS_WITH WAS -WDR5 REACTS_WITH WDR5 -WDR77 IN_SAME_COMPONENT PRMT5 -WDR77 REACTS_WITH CHD3 -WDR77 REACTS_WITH CHD4 -WDR77 REACTS_WITH GATAD2A -WDR77 REACTS_WITH GATAD2B -WDR77 REACTS_WITH HDAC1 -WDR77 REACTS_WITH HDAC2 -WDR77 REACTS_WITH MBD2 -WDR77 REACTS_WITH MTA2 -WDR77 REACTS_WITH RBBP4 -WDR77 REACTS_WITH RBBP7 -WEE1 STATE_CHANGE CCNB1 -WEE1 STATE_CHANGE CDK1 -WIF1 IN_SAME_COMPONENT WNT3A -WIF1 INTERACTS_WITH FZD1 -WIF1 INTERACTS_WITH LRP6 -WIF1 INTERACTS_WITH WNT1 -WIF1 REACTS_WITH WIF1 -WIF1 REACTS_WITH WNT3A -WIF1 STATE_CHANGE FZD1 -WIF1 STATE_CHANGE LRP6 -WIF1 STATE_CHANGE WNT1 -WIPF1 IN_SAME_COMPONENT FCER1A -WIPF1 IN_SAME_COMPONENT FCER1G -WIPF1 IN_SAME_COMPONENT IGHE -WIPF1 IN_SAME_COMPONENT LYN -WIPF1 IN_SAME_COMPONENT MS4A2 -WIPF1 IN_SAME_COMPONENT SYK -WIPF1 REACTS_WITH FCER1A -WIPF1 REACTS_WITH FCER1G -WIPF1 REACTS_WITH IGHE -WIPF1 REACTS_WITH LYN -WIPF1 REACTS_WITH MS4A2 -WIPF1 REACTS_WITH SYK -WIPF1 REACTS_WITH WIPF1 -WNT1 IN_SAME_COMPONENT FZD1 -WNT1 IN_SAME_COMPONENT FZD8 -WNT1 IN_SAME_COMPONENT LRP5 -WNT1 IN_SAME_COMPONENT LRP6 -WNT1 IN_SAME_COMPONENT RYK -WNT1 INTERACTS_WITH FZD1 -WNT1 INTERACTS_WITH LRP6 -WNT1 INTERACTS_WITH WIF1 -WNT1 REACTS_WITH DKK1 -WNT1 REACTS_WITH FZD1 -WNT1 REACTS_WITH FZD8 -WNT1 REACTS_WITH LRP5 -WNT1 REACTS_WITH LRP6 -WNT1 REACTS_WITH RYK -WNT1 REACTS_WITH WNT1 -WNT1 STATE_CHANGE DVL1 -WNT1 STATE_CHANGE MAP3K7 -WNT2 IN_SAME_COMPONENT FZD1 -WNT2 IN_SAME_COMPONENT FZD9 -WNT2 IN_SAME_COMPONENT LRP6 -WNT2 REACTS_WITH FZD1 -WNT2 REACTS_WITH FZD9 -WNT2 REACTS_WITH LRP6 -WNT2 REACTS_WITH WNT2 -WNT3A CO_CONTROL FZD2 -WNT3A CO_CONTROL WNT5A -WNT3A IN_SAME_COMPONENT ATP6AP2 -WNT3A IN_SAME_COMPONENT AXIN1 -WNT3A IN_SAME_COMPONENT FZD1 -WNT3A IN_SAME_COMPONENT FZD2 -WNT3A IN_SAME_COMPONENT FZD5 -WNT3A IN_SAME_COMPONENT FZD8 -WNT3A IN_SAME_COMPONENT LRP6 -WNT3A IN_SAME_COMPONENT WIF1 -WNT3A REACTS_WITH APC -WNT3A REACTS_WITH ATP6AP2 -WNT3A REACTS_WITH AXIN1 -WNT3A REACTS_WITH CTNNB1 -WNT3A REACTS_WITH DKK1 -WNT3A REACTS_WITH FZD1 -WNT3A REACTS_WITH FZD2 -WNT3A REACTS_WITH FZD5 -WNT3A REACTS_WITH FZD8 -WNT3A REACTS_WITH IGFBP4 -WNT3A REACTS_WITH LRP6 -WNT3A REACTS_WITH WIF1 -WNT3A REACTS_WITH WNT3A -WNT3A REACTS_WITH WNT5A -WNT3A STATE_CHANGE APC -WNT3A STATE_CHANGE AXIN1 -WNT3A STATE_CHANGE CTNNB1 -WNT3A STATE_CHANGE FZD5 -WNT3A STATE_CHANGE LRP6 -WNT3A STATE_CHANGE PI4K2A -WNT3A STATE_CHANGE PPP2R5A -WNT3A STATE_CHANGE WNT3A -WNT3 IN_SAME_COMPONENT FZD1 -WNT3 IN_SAME_COMPONENT LRP6 -WNT3 REACTS_WITH FZD1 -WNT3 REACTS_WITH LRP6 -WNT3 REACTS_WITH WNT3 -WNT5A CO_CONTROL FZD2 -WNT5A CO_CONTROL LRP6 -WNT5A CO_CONTROL PRKCZ -WNT5A CO_CONTROL WNT3A -WNT5A IN_SAME_COMPONENT DVL2 -WNT5A IN_SAME_COMPONENT FLNA -WNT5A IN_SAME_COMPONENT FZD2 -WNT5A IN_SAME_COMPONENT FZD4 -WNT5A IN_SAME_COMPONENT FZD7 -WNT5A IN_SAME_COMPONENT LRP5 -WNT5A IN_SAME_COMPONENT ROR2 -WNT5A REACTS_WITH DVL2 -WNT5A REACTS_WITH FLNA -WNT5A REACTS_WITH FZD2 -WNT5A REACTS_WITH FZD4 -WNT5A REACTS_WITH FZD7 -WNT5A REACTS_WITH LRP5 -WNT5A REACTS_WITH LRP6 -WNT5A REACTS_WITH ROR2 -WNT5A REACTS_WITH WNT3A -WNT5A REACTS_WITH WNT5A -WNT5A STATE_CHANGE RAC1 -WNT5A STATE_CHANGE YES1 -WNT7A IN_SAME_COMPONENT FZD5 -WNT7A IN_SAME_COMPONENT LRP6 -WNT7A REACTS_WITH FZD5 -WNT7A REACTS_WITH LRP6 -WNT7A REACTS_WITH WNT7A -WNT7B IN_SAME_COMPONENT FZD1 -WNT7B IN_SAME_COMPONENT FZD10 -WNT7B IN_SAME_COMPONENT LRP5 -WNT7B REACTS_WITH FZD1 -WNT7B REACTS_WITH FZD10 -WNT7B REACTS_WITH LRP5 -WNT7B REACTS_WITH WNT7B -WRN IN_SAME_COMPONENT TERF2 -WRN REACTS_WITH TERF2 -WRN REACTS_WITH WRN -WT1 METABOLIC_CATALYSIS TERT -WT1 REACTS_WITH WT1 -WWOX REACTS_WITH WWOX -WWOX STATE_CHANGE YAP1 -WWP1 IN_SAME_COMPONENT SMAD7 -WWP1 IN_SAME_COMPONENT TGFBR1 -WWP1 IN_SAME_COMPONENT TGFBR2 -WWP1 REACTS_WITH SMAD7 -WWP1 REACTS_WITH TGFBR1 -WWP1 REACTS_WITH TGFBR2 -WWP1 REACTS_WITH WWP1 -XIAP CO_CONTROL MAP3K7 -XIAP CO_CONTROL SMAD6 -XIAP IN_SAME_COMPONENT BMPR2 -XIAP IN_SAME_COMPONENT MAP3K7 -XIAP REACTS_WITH BMPR2 -XIAP REACTS_WITH MAP3K7 -XIAP REACTS_WITH XIAP -XIAP STATE_CHANGE MAP3K7 -XPO1 IN_SAME_COMPONENT HDAC1 -XPO1 IN_SAME_COMPONENT HDAC4 -XPO1 IN_SAME_COMPONENT NUP214 -XPO1 IN_SAME_COMPONENT RAN -XPO1 REACTS_WITH HDAC1 -XPO1 REACTS_WITH HDAC4 -XPO1 REACTS_WITH RAN -XPO1 REACTS_WITH XPO1 -XPO1 STATE_CHANGE APC -XPO1 STATE_CHANGE CBY1 -XPO1 STATE_CHANGE CTNNB1 -XPO1 STATE_CHANGE FOXO1 -XPO1 STATE_CHANGE FOXO3 -XPO1 STATE_CHANGE FOXO4 -XPO1 STATE_CHANGE GLI1 -XPO1 STATE_CHANGE NFATC1 -XPO1 STATE_CHANGE NFATC2 -XPO1 STATE_CHANGE NFKB1 -XPO1 STATE_CHANGE NFKBIA -XPO1 STATE_CHANGE RELA -XRCC5 CO_CONTROL AR -XRCC5 IN_SAME_COMPONENT BARD1 -XRCC5 IN_SAME_COMPONENT PRKDC -XRCC5 IN_SAME_COMPONENT TERT -XRCC5 IN_SAME_COMPONENT TP53 -XRCC5 IN_SAME_COMPONENT XRCC6 -XRCC5 METABOLIC_CATALYSIS KLK3 -XRCC5 REACTS_WITH BARD1 -XRCC5 REACTS_WITH PRKDC -XRCC5 REACTS_WITH TERT -XRCC5 REACTS_WITH TP53 -XRCC5 REACTS_WITH XRCC5 -XRCC5 REACTS_WITH XRCC6 -XRCC6 CO_CONTROL AR -XRCC6 IN_SAME_COMPONENT BARD1 -XRCC6 IN_SAME_COMPONENT BAX -XRCC6 IN_SAME_COMPONENT PRKDC -XRCC6 IN_SAME_COMPONENT SIRT1 -XRCC6 IN_SAME_COMPONENT TERT -XRCC6 IN_SAME_COMPONENT TP53 -XRCC6 IN_SAME_COMPONENT XRCC5 -XRCC6 METABOLIC_CATALYSIS KLK3 -XRCC6 REACTS_WITH BARD1 -XRCC6 REACTS_WITH BAX -XRCC6 REACTS_WITH PRKDC -XRCC6 REACTS_WITH SIRT1 -XRCC6 REACTS_WITH TERT -XRCC6 REACTS_WITH TP53 -XRCC6 REACTS_WITH XRCC5 -XRCC6 REACTS_WITH XRCC6 -YAP1 IN_SAME_COMPONENT SMAD7 -YAP1 IN_SAME_COMPONENT TGFBR1 -YAP1 IN_SAME_COMPONENT TGFBR2 -YAP1 REACTS_WITH SMAD7 -YAP1 REACTS_WITH TGFBR1 -YAP1 REACTS_WITH TGFBR2 -YAP1 REACTS_WITH YAP1 -YBX1 METABOLIC_CATALYSIS PTPN1 -YES1 STATE_CHANGE CDC42 -YWHAB IN_SAME_COMPONENT CDC25C -YWHAB IN_SAME_COMPONENT HDAC4 -YWHAB IN_SAME_COMPONENT HDAC5 -YWHAB REACTS_WITH CDC25C -YWHAB REACTS_WITH HDAC4 -YWHAB REACTS_WITH HDAC5 -YWHAB REACTS_WITH YWHAB -YWHAE CO_CONTROL RAF1 -YWHAE IN_SAME_COMPONENT EIF2A -YWHAE IN_SAME_COMPONENT HDAC4 -YWHAE IN_SAME_COMPONENT HDAC5 -YWHAE IN_SAME_COMPONENT NDEL1 -YWHAE IN_SAME_COMPONENT NFKB1 -YWHAE IN_SAME_COMPONENT NGF -YWHAE IN_SAME_COMPONENT NGFR -YWHAE IN_SAME_COMPONENT NGFRAP1 -YWHAE IN_SAME_COMPONENT RAF1 -YWHAE IN_SAME_COMPONENT SORT1 -YWHAE IN_SAME_COMPONENT TERT -YWHAE REACTS_WITH EIF2A -YWHAE REACTS_WITH HDAC4 -YWHAE REACTS_WITH HDAC5 -YWHAE REACTS_WITH NDEL1 -YWHAE REACTS_WITH NFKB1 -YWHAE REACTS_WITH NGF -YWHAE REACTS_WITH NGFR -YWHAE REACTS_WITH NGFRAP1 -YWHAE REACTS_WITH RAF1 -YWHAE REACTS_WITH SORT1 -YWHAE REACTS_WITH TERT -YWHAE REACTS_WITH YWHAE -YWHAQ IN_SAME_COMPONENT CABIN1 -YWHAQ IN_SAME_COMPONENT CALM1 -YWHAQ IN_SAME_COMPONENT CAMK4 -YWHAQ REACTS_WITH CABIN1 -YWHAQ REACTS_WITH CALM1 -YWHAQ REACTS_WITH CAMK4 -YWHAQ REACTS_WITH MEF2D -YWHAQ REACTS_WITH YWHAQ -YWHAZ CO_CONTROL KSR1 -YWHAZ IN_SAME_COMPONENT BAD -YWHAZ IN_SAME_COMPONENT CSF2 -YWHAZ IN_SAME_COMPONENT CSF2RA -YWHAZ IN_SAME_COMPONENT CSF2RB -YWHAZ IN_SAME_COMPONENT FN1 -YWHAZ IN_SAME_COMPONENT IL3 -YWHAZ IN_SAME_COMPONENT IL3RA -YWHAZ IN_SAME_COMPONENT ITGA4 -YWHAZ IN_SAME_COMPONENT ITGB1 -YWHAZ IN_SAME_COMPONENT JAK2 -YWHAZ IN_SAME_COMPONENT PIK3CA -YWHAZ IN_SAME_COMPONENT PIK3R1 -YWHAZ IN_SAME_COMPONENT PXN -YWHAZ IN_SAME_COMPONENT RAF1 -YWHAZ IN_SAME_COMPONENT SHC1 -YWHAZ REACTS_WITH BAD -YWHAZ REACTS_WITH CSF2 -YWHAZ REACTS_WITH CSF2RA -YWHAZ REACTS_WITH CSF2RB -YWHAZ REACTS_WITH FN1 -YWHAZ REACTS_WITH IL3 -YWHAZ REACTS_WITH IL3RA -YWHAZ REACTS_WITH ITGA4 -YWHAZ REACTS_WITH ITGB1 -YWHAZ REACTS_WITH JAK2 -YWHAZ REACTS_WITH PIK3CA -YWHAZ REACTS_WITH PIK3R1 -YWHAZ REACTS_WITH PXN -YWHAZ REACTS_WITH RAF1 -YWHAZ REACTS_WITH SHC1 -YWHAZ REACTS_WITH YWHAZ -YWHAZ STATE_CHANGE ATR -YWHAZ STATE_CHANGE ATRIP -YWHAZ STATE_CHANGE CEP164 -YWHAZ STATE_CHANGE CHEK1 -YWHAZ STATE_CHANGE CLSPN -YWHAZ STATE_CHANGE HUS1 -YWHAZ STATE_CHANGE PIK3CA -YWHAZ STATE_CHANGE PIK3R1 -YWHAZ STATE_CHANGE RAD1 -YWHAZ STATE_CHANGE RAD17 -YWHAZ STATE_CHANGE RAD9A -YWHAZ STATE_CHANGE RAF1 -YWHAZ STATE_CHANGE RFC2 -YWHAZ STATE_CHANGE RFC3 -YWHAZ STATE_CHANGE RFC4 -YWHAZ STATE_CHANGE RFC5 -YWHAZ STATE_CHANGE RPA1 -YWHAZ STATE_CHANGE RPA2 -YWHAZ STATE_CHANGE TIMELESS -YWHAZ STATE_CHANGE TIPIN -YWHAZ STATE_CHANGE TOPBP1 -YY1 CO_CONTROL E2F7 -YY1 CO_CONTROL ENO1 -YY1 CO_CONTROL HES1 -YY1 CO_CONTROL MYCBP -YY1 IN_SAME_COMPONENT E2F2 -YY1 IN_SAME_COMPONENT E2F3 -YY1 IN_SAME_COMPONENT HDAC1 -YY1 IN_SAME_COMPONENT HDAC2 -YY1 IN_SAME_COMPONENT HDAC3 -YY1 IN_SAME_COMPONENT MDM2 -YY1 IN_SAME_COMPONENT MLST8 -YY1 IN_SAME_COMPONENT MTOR -YY1 IN_SAME_COMPONENT NOTCH1 -YY1 IN_SAME_COMPONENT PPARGC1A -YY1 IN_SAME_COMPONENT RPTOR -YY1 IN_SAME_COMPONENT RYBP -YY1 IN_SAME_COMPONENT SAP30 -YY1 IN_SAME_COMPONENT TFCP2 -YY1 IN_SAME_COMPONENT UBE2D1 -YY1 METABOLIC_CATALYSIS CDC6 -YY1 METABOLIC_CATALYSIS CYCS -YY1 METABOLIC_CATALYSIS GAA -YY1 METABOLIC_CATALYSIS MYC -YY1 METABOLIC_CATALYSIS PPARGC1A -YY1 REACTS_WITH E2F3 -YY1 REACTS_WITH HDAC1 -YY1 REACTS_WITH HDAC2 -YY1 REACTS_WITH HDAC3 -YY1 REACTS_WITH MDM2 -YY1 REACTS_WITH MLST8 -YY1 REACTS_WITH MTOR -YY1 REACTS_WITH NOTCH1 -YY1 REACTS_WITH PPARGC1A -YY1 REACTS_WITH RPTOR -YY1 REACTS_WITH RYBP -YY1 REACTS_WITH SAP30 -YY1 REACTS_WITH TFCP2 -YY1 REACTS_WITH UBE2D1 -YY1 REACTS_WITH YY1 -YY1 STATE_CHANGE TP53 -ZAP70 CO_CONTROL FYN -ZAP70 CO_CONTROL ITK -ZAP70 CO_CONTROL PTPN11 -ZAP70 IN_SAME_COMPONENT B2M -ZAP70 IN_SAME_COMPONENT CBL -ZAP70 IN_SAME_COMPONENT CD247 -ZAP70 IN_SAME_COMPONENT CD3D -ZAP70 IN_SAME_COMPONENT CD3E -ZAP70 IN_SAME_COMPONENT CD3G -ZAP70 IN_SAME_COMPONENT CD4 -ZAP70 IN_SAME_COMPONENT CD8A -ZAP70 IN_SAME_COMPONENT CD8B -ZAP70 IN_SAME_COMPONENT HLA-A -ZAP70 IN_SAME_COMPONENT HLA-DRA -ZAP70 IN_SAME_COMPONENT HLA-DRB1 -ZAP70 IN_SAME_COMPONENT LCK -ZAP70 IN_SAME_COMPONENT SH3BP2 -ZAP70 IN_SAME_COMPONENT SLA2 -ZAP70 METABOLIC_CATALYSIS LAT -ZAP70 REACTS_WITH B2M -ZAP70 REACTS_WITH CBL -ZAP70 REACTS_WITH CD247 -ZAP70 REACTS_WITH CD3D -ZAP70 REACTS_WITH CD3E -ZAP70 REACTS_WITH CD3G -ZAP70 REACTS_WITH CD4 -ZAP70 REACTS_WITH CD8A -ZAP70 REACTS_WITH CD8B -ZAP70 REACTS_WITH HLA-A -ZAP70 REACTS_WITH HLA-DRA -ZAP70 REACTS_WITH HLA-DRB1 -ZAP70 REACTS_WITH LCK -ZAP70 REACTS_WITH SH3BP2 -ZAP70 REACTS_WITH SLA2 -ZAP70 REACTS_WITH ZAP70 -ZAP70 STATE_CHANGE CBL -ZAP70 STATE_CHANGE CSK -ZAP70 STATE_CHANGE DBNL -ZAP70 STATE_CHANGE GRAP2 -ZAP70 STATE_CHANGE LCP2 -ZAP70 STATE_CHANGE MAP4K1 -ZAP70 STATE_CHANGE PAG1 -ZAP70 STATE_CHANGE PRKCQ -ZAP70 STATE_CHANGE SHC1 -ZAP70 STATE_CHANGE VAV1 -ZBTB17 CO_CONTROL CREB1 -ZBTB17 CO_CONTROL DNMT3A -ZBTB17 CO_CONTROL GFI1 -ZBTB17 CO_CONTROL HDAC1 -ZBTB17 CO_CONTROL HDAC3 -ZBTB17 CO_CONTROL MAX -ZBTB17 CO_CONTROL MYC -ZBTB17 CO_CONTROL SMAD4 -ZBTB17 CO_CONTROL SP1 -ZBTB17 CO_CONTROL SPI1 -ZBTB17 CO_CONTROL TBP -ZBTB17 CO_CONTROL ZBTB17 -ZBTB17 IN_SAME_COMPONENT DNMT3A -ZBTB17 IN_SAME_COMPONENT EP300 -ZBTB17 IN_SAME_COMPONENT GFI1 -ZBTB17 IN_SAME_COMPONENT IRF8 -ZBTB17 IN_SAME_COMPONENT MAX -ZBTB17 IN_SAME_COMPONENT MYC -ZBTB17 IN_SAME_COMPONENT SMAD4 -ZBTB17 IN_SAME_COMPONENT SP1 -ZBTB17 IN_SAME_COMPONENT TJP2 -ZBTB17 METABOLIC_CATALYSIS BCL2 -ZBTB17 METABOLIC_CATALYSIS CCL5 -ZBTB17 METABOLIC_CATALYSIS CCND1 -ZBTB17 METABOLIC_CATALYSIS CDKN1A -ZBTB17 METABOLIC_CATALYSIS CDKN2B -ZBTB17 METABOLIC_CATALYSIS CEBPD -ZBTB17 METABOLIC_CATALYSIS CLU -ZBTB17 METABOLIC_CATALYSIS COL1A2 -ZBTB17 METABOLIC_CATALYSIS DDIT3 -ZBTB17 METABOLIC_CATALYSIS HMGCS2 -ZBTB17 METABOLIC_CATALYSIS ITGA6 -ZBTB17 METABOLIC_CATALYSIS ITGB1 -ZBTB17 METABOLIC_CATALYSIS ITGB4 -ZBTB17 METABOLIC_CATALYSIS LGALS1 -ZBTB17 METABOLIC_CATALYSIS MXD4 -ZBTB17 METABOLIC_CATALYSIS NDRG2 -ZBTB17 METABOLIC_CATALYSIS SLC11A1 -ZBTB17 REACTS_WITH DNMT3A -ZBTB17 REACTS_WITH EP300 -ZBTB17 REACTS_WITH GFI1 -ZBTB17 REACTS_WITH IRF8 -ZBTB17 REACTS_WITH MAX -ZBTB17 REACTS_WITH MYC -ZBTB17 REACTS_WITH SMAD4 -ZBTB17 REACTS_WITH SP1 -ZBTB17 REACTS_WITH TJP2 -ZBTB17 REACTS_WITH ZBTB17 -ZBTB33 CO_CONTROL CDH1 -ZBTB33 CO_CONTROL CTNND1 -ZBTB33 CO_CONTROL ZBTB33 -ZBTB33 IN_SAME_COMPONENT CDH1 -ZBTB33 IN_SAME_COMPONENT CTNND1 -ZBTB33 METABOLIC_CATALYSIS MMP7 -ZBTB33 REACTS_WITH CDH1 -ZBTB33 REACTS_WITH CTNND1 -ZBTB33 REACTS_WITH ZBTB33 -ZFPM1 IN_SAME_COMPONENT CHD3 -ZFPM1 IN_SAME_COMPONENT CHD4 -ZFPM1 IN_SAME_COMPONENT GATA1 -ZFPM1 IN_SAME_COMPONENT GATAD2A -ZFPM1 IN_SAME_COMPONENT GATAD2B -ZFPM1 IN_SAME_COMPONENT HDAC1 -ZFPM1 IN_SAME_COMPONENT HDAC2 -ZFPM1 IN_SAME_COMPONENT MBD3 -ZFPM1 IN_SAME_COMPONENT MTA2 -ZFPM1 IN_SAME_COMPONENT RBBP4 -ZFPM1 IN_SAME_COMPONENT RBBP7 -ZFPM1 METABOLIC_CATALYSIS MYB -ZFPM1 REACTS_WITH CHD3 -ZFPM1 REACTS_WITH CHD4 -ZFPM1 REACTS_WITH GATA1 -ZFPM1 REACTS_WITH GATAD2A -ZFPM1 REACTS_WITH GATAD2B -ZFPM1 REACTS_WITH HDAC1 -ZFPM1 REACTS_WITH HDAC2 -ZFPM1 REACTS_WITH MBD3 -ZFPM1 REACTS_WITH MTA2 -ZFPM1 REACTS_WITH RBBP4 -ZFPM1 REACTS_WITH RBBP7 -ZFPM1 REACTS_WITH ZFPM1 -ZFYVE16 IN_SAME_COMPONENT BMPR2 -ZFYVE16 IN_SAME_COMPONENT PPP1CA -ZFYVE16 IN_SAME_COMPONENT PPP1R15A -ZFYVE16 IN_SAME_COMPONENT SMAD1 -ZFYVE16 IN_SAME_COMPONENT SMAD4 -ZFYVE16 IN_SAME_COMPONENT TGFBR1 -ZFYVE16 IN_SAME_COMPONENT TGFBR2 -ZFYVE16 REACTS_WITH BMPR2 -ZFYVE16 REACTS_WITH PPP1CA -ZFYVE16 REACTS_WITH PPP1R15A -ZFYVE16 REACTS_WITH SMAD1 -ZFYVE16 REACTS_WITH SMAD2 -ZFYVE16 REACTS_WITH SMAD4 -ZFYVE16 REACTS_WITH TGFBR1 -ZFYVE16 REACTS_WITH TGFBR2 -ZFYVE16 REACTS_WITH ZFYVE16 -ZFYVE28 CO_CONTROL HGS -ZFYVE28 CO_CONTROL TSG101 -ZFYVE28 CO_CONTROL VPS24 -ZFYVE28 STATE_CHANGE EGF -ZFYVE28 STATE_CHANGE EGFR -ZFYVE28 STATE_CHANGE SOS1 -ZFYVE9 CO_CONTROL SMAD7 -ZFYVE9 CO_CONTROL STRAP -ZFYVE9 CO_CONTROL TGFBR1 -ZFYVE9 CO_CONTROL TGFBR2 -ZFYVE9 IN_SAME_COMPONENT TGFBR1 -ZFYVE9 IN_SAME_COMPONENT TGFBR2 -ZFYVE9 REACTS_WITH CAV1 -ZFYVE9 REACTS_WITH SMAD7 -ZFYVE9 REACTS_WITH TGFBR1 -ZFYVE9 REACTS_WITH TGFBR2 -ZFYVE9 REACTS_WITH ZFYVE9 -ZFYVE9 STATE_CHANGE PPP1CA -ZFYVE9 STATE_CHANGE PPP1R15A -ZFYVE9 STATE_CHANGE SMAD2 -ZFYVE9 STATE_CHANGE SMAD7 -ZFYVE9 STATE_CHANGE STRAP -ZFYVE9 STATE_CHANGE TGFBR1 -ZFYVE9 STATE_CHANGE TGFBR2 -ZMIZ1 STATE_CHANGE AR -ZMIZ2 CO_CONTROL AR -ZMIZ2 CO_CONTROL SMARCA2 -ZMIZ2 CO_CONTROL SMARCE1 -ZMIZ2 METABOLIC_CATALYSIS KLK3 -ZNF274 IN_SAME_COMPONENT BDNF -ZNF274 IN_SAME_COMPONENT NGF -ZNF274 IN_SAME_COMPONENT NGFR -ZNF274 IN_SAME_COMPONENT SORT1 -ZNF274 IN_SAME_COMPONENT TRAF6 -ZNF274 REACTS_WITH BDNF -ZNF274 REACTS_WITH NGF -ZNF274 REACTS_WITH NGFR -ZNF274 REACTS_WITH SORT1 -ZNF274 REACTS_WITH TRAF6 -ZNF274 REACTS_WITH ZNF274 -ZNF274 STATE_CHANGE TP53 -ZNF385A CO_CONTROL HDAC2 -ZNF385A CO_CONTROL POU4F1 -ZNF385A CO_CONTROL SMARCA4 -ZNF385A CO_CONTROL TADA2B -ZNF385A CO_CONTROL TAF9 -ZNF385A CO_CONTROL TP53 -ZNF385A METABOLIC_CATALYSIS CDKN1A -ZNF385A METABOLIC_CATALYSIS SFN -ZYX IN_SAME_COMPONENT F2R -ZYX REACTS_WITH F2R -ZYX REACTS_WITH ZYX -ZYX STATE_CHANGE VASP diff --git a/core/src/main/resources/survival_no_plots.txt b/core/src/main/resources/survival_no_plots.txt deleted file mode 100644 index 9d0e163bbb0..00000000000 --- a/core/src/main/resources/survival_no_plots.txt +++ /dev/null @@ -1,51 +0,0 @@ -library(survival) -attach(df) - -os_p_val = -1 -dfs_p_val = -1 -num_groups = -1 -os_error = 0 -dfs_error = 0 - -# Determine number of groups we are dealing with -num_groups = length(unique(df$GENE_SET_ALTERED)) -# Perform Overall Survival Analysis -os_surv = Surv (df$OS_MONTHS, df$OS_STATUS) -two_colors = c("red", "blue") -os_surv_fit = tryCatch(survfit(os_surv ~ GENE_SET_ALTERED), - error=function(e) NULL) - -if (num_groups > 1) { - if (! is.null(os_surv_fit)) { - os_log_rank = survdiff (os_surv ~ GENE_SET_ALTERED) - os_p_val <- 1 - pchisq(os_log_rank$chisq, length(os_log_rank$n) - 1) - } else { - os_error = 1 - } -} else { - if (is.null(os_surv_fit)) { - os_error = 1 - } -} - -# Perform Disease Free Survival Analysis -dfs_surv = Surv (df$DFS_MONTHS, df$DFS_STATUS) -dfs_surv_fit = tryCatch(survfit(dfs_surv ~ GENE_SET_ALTERED), - error=function(e) NULL) -if (num_groups > 1) { - if (! is.null(dfs_surv_fit)) { - dfs_log_rank = tryCatch(survdiff (dfs_surv ~ GENE_SET_ALTERED), - error=function(e) NULL) - if (! is.null(dfs_log_rank)) { - dfs_p_val <- 1 - pchisq(dfs_log_rank$chisq, length(dfs_log_rank$n) - 1) - } else { - dfs_error = 1 - } - } else { - dfs_error = 1 - } -} else { - if (is.null(dfs_surv_fit)) { - dfs_error = 1 - } -} \ No newline at end of file diff --git a/core/src/main/scripts/addCaseList.pl b/core/src/main/scripts/addCaseList.pl deleted file mode 100755 index fa41586598e..00000000000 --- a/core/src/main/scripts/addCaseList.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.AddCaseList @ARGV"); diff --git a/core/src/main/scripts/all-breast-su2c.sh b/core/src/main/scripts/all-breast-su2c.sh deleted file mode 100755 index c1105ec1ce6..00000000000 --- a/core/src/main/scripts/all-breast-su2c.sh +++ /dev/null @@ -1,39 +0,0 @@ -# Load up the Breast Meta Data File -./importCancerStudy.pl $GDAC_CGDS_STAGING_HOME/brca_tcga/brca_tcga.txt - -# Imports All Case Lists -./importCaseList.pl $GDAC_CGDS_STAGING_HOME/brca_tcga/case_lists - -# Imports Clinical Data -./importClinicalData.pl $GDAC_CGDS_STAGING_HOME/brca_tcga/brca_tcga_clinical.txt brca_tcga - -# Imports Mutation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_mutations_extended.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_CNA.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_CNA.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_log2CNA.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_log2CNA.txt --dbmsAction clobber - -# Imports MRNA Expression Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_expression_median.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_RNA_Seq_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_RNA_Seq_expression_median.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_mRNA_median_Zscores.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_RNA_Seq_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_RNA_Seq_mRNA_median_Zscores.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_expression_merged_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_expression_merged_median_Zscores.txt --dbmsAction clobber - -# Imports miRNA Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_expression_miRNA.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_expression_miRNA.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_miRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_miRNA_median_Zscores.txt --dbmsAction clobber - -# Imports Methylation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/brca_tcga/data_methylation.txt --meta $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_methylation.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $GDAC_CGDS_STAGING_HOME/brca_tcga/data_mutsig.txt $GDAC_CGDS_STAGING_HOME/brca_tcga/meta_mutsig.txt - -# Gistic -./importGistic.pl $GDAC_CGDS_STAGING_HOME/brca_tcga/data_GISTIC_GENE_AMPS.txt brca_tcga -./importGistic.pl $GDAC_CGDS_STAGING_HOME/brca_tcga/data_GISTIC_GENE_DELS.txt brca_tcga - -# Copy number segment -./importCopyNumberSegmentData.pl $GDAC_CGDS_STAGING_HOME/brca_tcga/brca_tcga_scna_minus_germline_cnv_hg19.seg brca_tcga \ No newline at end of file diff --git a/core/src/main/scripts/all-coadread-public.sh b/core/src/main/scripts/all-coadread-public.sh deleted file mode 100755 index 2aa926a15ff..00000000000 --- a/core/src/main/scripts/all-coadread-public.sh +++ /dev/null @@ -1,39 +0,0 @@ -# Load up the Meta Data File -./importCancerStudy.pl $GDAC_CGDS_STAGING_HOME/coadread_tcga/coadread_tcga.txt - -# Imports All Case Lists -./importCaseList.pl $GDAC_CGDS_STAGING_HOME/coadread_tcga/case_lists - -# Imports Clinical Data -./importClinicalData.pl $GDAC_CGDS_STAGING_HOME/coadread_tcga/coadread_tcga_clinical.txt coadread_tcga - -# Imports Mutation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_mutations_extended.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_CNA.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_CNA.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_log2CNA.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_log2CNA.txt --dbmsAction clobber - -# Imports MRNA Expression Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_expression_median.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_RNA_Seq_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_RNA_Seq_expression_median.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_mRNA_median_Zscores.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_RNA_Seq_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_RNA_Seq_mRNA_median_Zscores.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_expression_merged_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_expression_merged_median_Zscores.txt --dbmsAction clobber - -# Imports miRNA Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_expression_miRNA.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_expression_miRNA.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_miRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_miRNA_median_Zscores.txt --dbmsAction clobber - -# Imports Methylation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_methylation.txt --meta $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_methylation.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_mutsig.txt $GDAC_CGDS_STAGING_HOME/coadread_tcga/meta_mutsig.txt - -# Gistic -./importGistic.pl $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_GISTIC_GENE_AMPS.txt coadread_tcga -./importGistic.pl $GDAC_CGDS_STAGING_HOME/coadread_tcga/data_GISTIC_GENE_DELS.txt coadread_tcga - -# Copy number segment -./importCopyNumberSegmentData.pl $GDAC_CGDS_STAGING_HOME/coadread_tcga/coadread_tcga_scna_minus_germline_cnv_hg19.seg coadread_tcga \ No newline at end of file diff --git a/core/src/main/scripts/all-gbm-public.sh b/core/src/main/scripts/all-gbm-public.sh deleted file mode 100755 index acf036bbabf..00000000000 --- a/core/src/main/scripts/all-gbm-public.sh +++ /dev/null @@ -1,41 +0,0 @@ -################################################# -# WARNING - these scripts should not be used -# to create a Public Portal within the cBio Lab. -# The firehose converter should be used instead. -################################################ - -# Load up the GBM_TCGA Meta Data File -./importCancerStudy.pl $GDAC_CGDS_STAGING_HOME/gbm_tcga/gbm_tcga.txt - -# Load Cases and Clinical Data -./importCaseList.pl $GDAC_CGDS_STAGING_HOME/gbm_tcga/case_lists -./importClinicalData.pl $GDAC_CGDS_STAGING_HOME/gbm_tcga/gbm_tcga_clinical.txt gbm_tcga - -# Load Mutation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_mutations_extended.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_mutations_extended.txt --dbmsAction clobber - -# Load CNA Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_CNA.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_CNA.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_log2CNA.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_log2CNA.txt --dbmsAction clobber - -# Load mRNA Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_expression_median.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_expression_merged_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_expression_merged_median_Zscores.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_mRNA_median_Zscores.txt --dbmsAction clobber - -# Load miRNA -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_miRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_miRNA_median_Zscores.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_expression_miRNA.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_expression_miRNA.txt --dbmsAction clobber - -# Import Methylation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_methylation.txt --meta $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_methylation.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_mutsig.txt $GDAC_CGDS_STAGING_HOME/gbm_tcga/meta_mutsig.txt - -# Gistic -./importGistic.pl $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_GISTIC_GENE_AMPS.txt gbm_tcga -./importGistic.pl $GDAC_CGDS_STAGING_HOME/gbm_tcga/data_GISTIC_GENE_DELS.txt gbm_tcga - -# Copy number segment -./importCopyNumberSegmentData.pl $GDAC_CGDS_STAGING_HOME/gbm_tcga/gbm_tcga_scna_minus_germline_cnv_hg19.seg gbm_tcga \ No newline at end of file diff --git a/core/src/main/scripts/all-lusc-public.sh b/core/src/main/scripts/all-lusc-public.sh deleted file mode 100644 index 5fad101f004..00000000000 --- a/core/src/main/scripts/all-lusc-public.sh +++ /dev/null @@ -1,42 +0,0 @@ -# Load up the Meta Data File -./importCancerStudy.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/lusc_tcga.txt - -# Imports All Case Lists -./importCaseList.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/case_lists - -# Imports Clinical Data -./importClinicalData.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/lusc_tcga_clinical.txt lusc_tcga - -# Imports Mutation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_mutations_extended.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_CNA.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_CNA.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_log2CNA.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_log2CNA.txt --dbmsAction clobber - -# Imports MRNA Expression Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_expression_median.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_RNA_Seq_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_RNA_Seq_expression_median.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_mRNA_median_Zscores.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_RNA_Seq_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_RNA_Seq_mRNA_median_Zscores.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_expression_merged_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_expression_merged_median_Zscores.txt --dbmsAction clobber - -# Imports miRNA Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_expression_miRNA.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_expression_miRNA.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_miRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_miRNA_median_Zscores.txt --dbmsAction clobber - -# Imports Methylation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_methylation.txt --meta $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_methylation.txt --dbmsAction clobber - -# RPPA -#./importProteinArrayData.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_rppa.txt lusc_tcga - -# MutSig -#./importMutSig.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_mutsig.txt $GDAC_CGDS_STAGING_HOME/lusc_tcga/meta_mutsig.txt - -# Gistic -./importGistic.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_GISTIC_GENE_AMPS.txt lusc_tcga -./importGistic.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/data_GISTIC_GENE_DELS.txt lusc_tcga - -# Copy number segment -./importCopyNumberSegmentData.pl $GDAC_CGDS_STAGING_HOME/lusc_tcga/lusc_tcga_scna_minus_germline_cnv_hg19.seg lusc_tcga \ No newline at end of file diff --git a/core/src/main/scripts/all-ovarian-public.sh b/core/src/main/scripts/all-ovarian-public.sh deleted file mode 100755 index 217704a444e..00000000000 --- a/core/src/main/scripts/all-ovarian-public.sh +++ /dev/null @@ -1,40 +0,0 @@ -################################################# -# WARNING - these scripts should not be used -# to create a Public Portal within the cBio Lab. -# The firehose converter should be used instead. -################################################ - -# Load up the Ovarian Meta Data File -./importCancerStudy.pl $PORTAL_DATA_HOME/public-override/ov_tcga_pub/ov_tcga_pub.txt - -# Imports All Case Lists -./importCaseList.pl $PORTAL_DATA_HOME/public-override/ov_tcga_pub/case_lists - -# Imports Clinical Data -./importClinicalData.pl $PORTAL_DATA_HOME/public-override/ov_tcga_pub/ov_tcga_clinical.txt ov_tcga_pub - -# Imports Mutation Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_mutations_extended.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_CNA.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_CNA.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_CNA_RAE.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_CNA_RAE.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_log2CNA.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_log2CNA.txt --dbmsAction clobber - -# Imports MRNA Expression Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_expression_median.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_expression_median.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_expression_merged_median_Zscores.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_expression_merged_median_Zscores.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_mRNA_median_Zscores.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_mRNA_median_Zscores.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_mRNA_unified.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_mRNA_unified.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_mRNA_unified_Zscores.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_mRNA_unified_Zscores.txt --dbmsAction clobber - -# Imports miRNA Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_expression_miRNA.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_expression_miRNA.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_miRNA_median_Zscores.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_miRNA_median_Zscores.txt --dbmsAction clobber - -# Imports Methylation Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_methylation.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_methylation.txt --dbmsAction clobber -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/ov_tcga_pub/data_brca1_binary_methylation.txt --meta $PORTAL_DATA_HOME/public-override/ov_tcga_pub/meta_brca1_binary_methylation.txt --dbmsAction clobber - -# Copy number segment -#./importCopyNumberSegmentData.pl $PORTAL_DATA_HOME/public-override/ov_tcga_pub/ov_tcga_pub_scna_hg18.seg ov_tcga_pub diff --git a/core/src/main/scripts/all-ovarian-su2c.sh b/core/src/main/scripts/all-ovarian-su2c.sh deleted file mode 100755 index 1a5e7806ebf..00000000000 --- a/core/src/main/scripts/all-ovarian-su2c.sh +++ /dev/null @@ -1,51 +0,0 @@ -# Delete all preprocessed files -rm -v $GDAC_CGDS_STAGING_HOME/ovarian/processed_* - -# Load up the Ovarian Meta Data File -./importCancerStudy.pl $GDAC_CGDS_STAGING_HOME/ov_tcga/ov_tcga.txt - -# Pre-process data for import -# Runs: -# /scripts/ovarian/gen-rae.py -# --> this script converts RefSeq IDs to Entrez Gene Ids. -# /scripts/ovarian/gen-mrna-expression.py -# --> this script also converts RefSeq IDs to Entrez Gene Ids. -./ovarian/preprocess-all.py - -# Imports All Case Lists -./importCaseList.pl $GDAC_CGDS_STAGING_HOME/ov_tcga/case_lists - -# Imports Clinical Data -./importClinicalData.pl $GDAC_CGDS_STAGING_HOME/ov_tcga/ov_tcga_clinical.txt ov_tcga - -# Imports Mutation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_mutations_extended.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_mutations_extended.txt --dbmsAction clobber --germlineWhiteList $GDAC_CGDS_STAGING_HOME/ov_tcga/ovarianGermlineWhiteList.txt - -# Imports Copy Number Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_CNA.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_CNA.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_log2CNA.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_log2CNA.txt --dbmsAction clobber - -# Imports MRNA Expression Data Files -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_expression_median.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_mRNA_median_Zscores.txt --dbmsAction clobber - -# Imports microRNA Expression Data Files -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_miRNA.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_miRNA.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_miRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_miRNA_median_Zscores.txt --dbmsAction clobber - -# Import Methylation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_methylation.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_methylation.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_brca1_binary_methylation.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_brca1_binary_methylation.txt --dbmsAction clobber - -# import ovarian protein data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ov_tcga/data_protein.txt --meta $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_protein.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $GDAC_CGDS_STAGING_HOME/ov_tcga/data_mutsig.txt $GDAC_CGDS_STAGING_HOME/ov_tcga/meta_mutsig.txt - -# Gistic -./importGistic.pl $GDAC_CGDS_STAGING_HOME/ov_tcga/data_GISTIC_GENE_AMPS.txt ov_tcga -./importGistic.pl $GDAC_CGDS_STAGING_HOME/ov_tcga/data_GISTIC_GENE_DELS.txt ov_tcga - -# Copy number segment -./importCopyNumberSegmentData.pl $GDAC_CGDS_STAGING_HOME/ov_tcga/ov_tcga_scna_minus_germline_cnv_hg19.seg ov_tcga diff --git a/core/src/main/scripts/all-prostate-broad.sh b/core/src/main/scripts/all-prostate-broad.sh deleted file mode 100755 index 5cb686db8a9..00000000000 --- a/core/src/main/scripts/all-prostate-broad.sh +++ /dev/null @@ -1,20 +0,0 @@ -# Load up the PRAD_BROAD Meta Data File -./importCancerStudy.pl $PORTAL_DATA_HOME/private-override/prad_broad/prad_broad.txt - -# Imports All Case Lists -./importCaseList.pl $PORTAL_DATA_HOME/private-override/prad_broad/case_lists - -# Imports Clinical Data -./importClinicalData.pl $PORTAL_DATA_HOME/private-override/prad_broad/prad_broad_clinical.txt prad_broad - -# Imports Mutation Data -./importProfileData.pl --data $PORTAL_DATA_HOME/private-override/prad_broad/data_mutations_extended.txt --meta $PORTAL_DATA_HOME/private-override/prad_broad/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $PORTAL_DATA_HOME/private-override/prad_broad/data_CNA.txt --meta $PORTAL_DATA_HOME/private-override/prad_broad/meta_CNA.txt --dbmsAction clobber - -# Copy number segment -#./importCopyNumberSegmentData.pl $PORTAL_DATA_HOME/private-override/prad_broad/prad_broad_scna_hg18.seg prad_broad - -# MutSig -./importMutSig.pl $PORTAL_DATA_HOME/private-override/prad_broad/data_mutsig.txt $PORTAL_DATA_HOME/private-override/prad_broad/meta_mutsig.txt diff --git a/core/src/main/scripts/all-prostate-mich.sh b/core/src/main/scripts/all-prostate-mich.sh deleted file mode 100755 index 70180ba2a4a..00000000000 --- a/core/src/main/scripts/all-prostate-mich.sh +++ /dev/null @@ -1,23 +0,0 @@ -# Load up the PRAD_MICH Meta Data File -./importCancerStudy.pl $PORTAL_DATA_HOME/studies/prad/mich/meta_study.txt - -# Imports All Case Lists -./importCaseList.pl $PORTAL_DATA_HOME/studies/prad/mich/case_lists - -# Imports Clinical Data -./importClinicalData.pl $PORTAL_DATA_HOME/studies/prad/mich/data_clinical.txt prad_mich - -# Imports Mutation Data -./importProfileData.pl --data $PORTAL_DATA_HOME/studies/prad/mich/data_mutations_extended.txt --meta $PORTAL_DATA_HOME/studies/prad/mich/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $PORTAL_DATA_HOME/studies/prad/mich/data_CNA.txt --meta $PORTAL_DATA_HOME/studies/prad/mich/meta_CNA.txt --dbmsAction clobber - -# Copy number segment -#./importCopyNumberSegmentData.pl $PORTAL_DATA_HOME/studies/prad/mich/prad_mich_scna_hg18.seg prad_mich - -# Imports MRNA Expression Data -./importProfileData.pl --data $PORTAL_DATA_HOME/studies/prad/mich/data_expression_median.txt --meta $PORTAL_DATA_HOME/studies/prad/mich/meta_expression_median.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $PORTAL_DATA_HOME/studies/prad/mich/data_mutsig.txt $PORTAL_DATA_HOME/studies/prad/mich/meta_mutsig.txt diff --git a/core/src/main/scripts/all-prostate-mskcc.sh b/core/src/main/scripts/all-prostate-mskcc.sh deleted file mode 100755 index 9e8b90d5f5d..00000000000 --- a/core/src/main/scripts/all-prostate-mskcc.sh +++ /dev/null @@ -1,23 +0,0 @@ -# Load up the PRAD_BROAD Meta Data File -./importCancerStudy.pl $PORTAL_DATA_HOME/public-override/prad_mskcc/prad_mskcc.txt - -# Imports All Case Lists -./importCaseList.pl $PORTAL_DATA_HOME/public-override/prad_mskcc/case_lists - -# Imports Clinical Data -./importClinicalData.pl $PORTAL_DATA_HOME/public-override/prad_mskcc/prad_mskcc_clinical.txt prad_mskcc - -# Imports Mutation Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/prad_mskcc/data_mutations_extended.txt --meta $PORTAL_DATA_HOME/public-override/prad_mskcc/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/prad_mskcc/data_CNA.txt --meta $PORTAL_DATA_HOME/public-override/prad_mskcc/meta_CNA.txt --dbmsAction clobber - -# Copy number segment -#./importCopyNumberSegmentData.pl $PORTAL_DATA_HOME/public-override/prad_mskcc/prad_mskcc_scna_hg18.seg prad_mskcc - -# Imports MRNA Expression Data -./importProfileData.pl --data $PORTAL_DATA_HOME/public-override/prad_mskcc/data_mRNA_ZbyNorm.txt --meta $PORTAL_DATA_HOME/public-override/prad_mskcc/meta_mRNA_ZbyNorm.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $PORTAL_DATA_HOME/public-override/prad_mskcc/data_mutsig.txt $PORTAL_DATA_HOME/public-override/prad_mskcc/meta_mutsig.txt \ No newline at end of file diff --git a/core/src/main/scripts/all-prostate-su2c.sh b/core/src/main/scripts/all-prostate-su2c.sh deleted file mode 100755 index 23dad03c4b3..00000000000 --- a/core/src/main/scripts/all-prostate-su2c.sh +++ /dev/null @@ -1,4 +0,0 @@ -./all-prostate-tcga.sh -./all-prostate-broad.sh -./all-prostate-mich.sh -./all-prostate-mskcc.sh diff --git a/core/src/main/scripts/all-prostate-tcga.sh b/core/src/main/scripts/all-prostate-tcga.sh deleted file mode 100755 index 7bf3c19af49..00000000000 --- a/core/src/main/scripts/all-prostate-tcga.sh +++ /dev/null @@ -1,25 +0,0 @@ -# Load up the PRAD_TCGA Meta Data File -./importCancerStudy.pl $GDAC_CGDS_STAGING_HOME/prad_tcga/prad_tcga.txt - -# Imports All Case Lists -./importCaseList.pl $GDAC_CGDS_STAGING_HOME/prad_tcga/case_lists - -# Imports Clinical Data -./importClinicalData.pl $GDAC_CGDS_STAGING_HOME/prad_tcga/prad_tcga_clinical.txt prad_tcga - -# Imports Mutation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/prad_tcga/data_mutations_extended.txt --meta $GDAC_CGDS_STAGING_HOME/prad_tcga/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/prad_tcga/data_CNA.txt --meta $GDAC_CGDS_STAGING_HOME/prad_tcga/meta_CNA.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/prad_tcga/data_log2CNA.txt --meta $GDAC_CGDS_STAGING_HOME/prad_tcga/meta_log2CNA.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $GDAC_CGDS_STAGING_HOME/prad_tcga/data_mutsig.txt $GDAC_CGDS_STAGING_HOME/prad_tcga/meta_mutsig.txt - -# Gistic -./importGistic.pl $GDAC_CGDS_STAGING_HOME/prad_tcga/data_GISTIC_GENE_AMPS.txt prad_tcga -./importGistic.pl $GDAC_CGDS_STAGING_HOME/prad_tcga/data_GISTIC_GENE_DELS.txt prad_tcga - -# Copy number segment -./importCopyNumberSegmentData.pl $GDAC_CGDS_STAGING_HOME/prad_tcga/prad_tcga_scna_minus_germline_cnv_hg19.seg prad_tcga diff --git a/core/src/main/scripts/all-su2c.sh b/core/src/main/scripts/all-su2c.sh deleted file mode 100755 index c4c4507642d..00000000000 --- a/core/src/main/scripts/all-su2c.sh +++ /dev/null @@ -1,22 +0,0 @@ -./init.sh - -# ovarian -./all-ovarian-su2c.sh - -# gdac-breast -./all-breast-su2c.sh - -# gdac-endometrial -./all-ucec-su2c.sh - -# Gray cell line -#./all-gray-cell-line-su2c.sh - -# prostate -./all-prostate-su2c.sh - -# gbm -./all-gbm-public.sh - -# coadread -./all-coadread-public.sh \ No newline at end of file diff --git a/core/src/main/scripts/all-ucec-su2c.sh b/core/src/main/scripts/all-ucec-su2c.sh deleted file mode 100755 index 3ad0f858c83..00000000000 --- a/core/src/main/scripts/all-ucec-su2c.sh +++ /dev/null @@ -1,34 +0,0 @@ -# Load up the Endometrioid (UCEC_TCGA) Meta Data File -./importCancerStudy.pl $GDAC_CGDS_STAGING_HOME/ucec_tcga/ucec_tcga.txt - -# Imports All Case Lists -./importCaseList.pl $GDAC_CGDS_STAGING_HOME/ucec_tcga/case_lists - -# Imports Clinical Data -./importClinicalData.pl $GDAC_CGDS_STAGING_HOME/ucec_tcga/ucec_tcga_clinical.txt ucec_tcga - -# Imports Mutation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_mutations_extended.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_mutations_extended.txt --dbmsAction clobber - -# Imports Copy Number Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_CNA.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_CNA.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_log2CNA.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_log2CNA.txt --dbmsAction clobber - -# Imports MRNA Expression Data -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_expression_median.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_RNA_Seq_expression_median.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_RNA_Seq_expression_median.txt --dbmsAction clobber -#./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_mRNA_median_Zscores.txt --dbmsAction clobber -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_RNA_Seq_mRNA_median_Zscores.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_RNA_Seq_mRNA_median_Zscores.txt --dbmsAction clobber - -# Imports Methylation Data -./importProfileData.pl --data $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_methylation.txt --meta $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_methylation.txt --dbmsAction clobber - -# MutSig -./importMutSig.pl $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_mutsig.txt $GDAC_CGDS_STAGING_HOME/ucec_tcga/meta_mutsig.txt - -# Gistic -./importGistic.pl $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_GISTIC_GENE_AMPS.txt ucec_tcga -./importGistic.pl $GDAC_CGDS_STAGING_HOME/ucec_tcga/data_GISTIC_GENE_DELS.txt ucec_tcga - -# Copy number segment -./importCopyNumberSegmentData.pl $GDAC_CGDS_STAGING_HOME/ucec_tcga/ucec_tcga.seg ucec_tcga diff --git a/core/src/main/scripts/calculateCoExpression.pl b/core/src/main/scripts/calculateCoExpression.pl deleted file mode 100644 index 7e1a2a27887..00000000000 --- a/core/src/main/scripts/calculateCoExpression.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx2048M -XX:-UseGCOverheadLimit -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.CalculateCoexpression @ARGV"); diff --git a/core/src/main/scripts/calculateMutationFrequencies.py b/core/src/main/scripts/calculateMutationFrequencies.py deleted file mode 100755 index 208bda1e2b9..00000000000 --- a/core/src/main/scripts/calculateMutationFrequencies.py +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.CalculateMutationFrequencies @ARGV"); diff --git a/core/src/main/scripts/compareDirectAndBulkDBMSload.pl b/core/src/main/scripts/compareDirectAndBulkDBMSload.pl deleted file mode 100755 index 27bbb9b7836..00000000000 --- a/core/src/main/scripts/compareDirectAndBulkDBMSload.pl +++ /dev/null @@ -1,332 +0,0 @@ -#!/usr/bin/perl -use strict; -use warnings; -use File::Util; -use Cwd 'abs_path'; # unfortunately, File::Util doesn't find absolute paths -use Data::Dumper; -use Path::Class; -use Getopt::Long; - -# compareDirectAndBulkDBMSload.pl -# automate performance comparison of cgds upload scripts -# test performance of upload of all cgds shellscripts, and plot results - -# author: Arthur Goldberg -# date: Oct 2010 -# this program compares the performance and results of direct load (record insert via SQL INSERT) and bulkload (record insert via -# MySQL LOAD FILE). It executes a set of shell scripts in cgds/bin, provided by the --cgdsScripts option or cgdsLoadScripts(). -# each script is executed twice, once using direct load and once using bulk load. We compare -# 1) the performance of each execution, and -# 2) the DBMS results of each execution -# performance results are written to a file named by $outFileName, structured for import into a spreadsheed and plotting -# DBMS results are compared via MySQL checksum, and written to a file named by $checksumCompareOutput; direct and bulk load should -# produce identical results in each table; as of Oct 2010, they do. - -# on laptop: ./compareDirectAndBulkDBMSload.pl --outputDir "/Users/goldbera/Documents/Projects/TCGA Portal/Fast DBMS load/data/" --MySQLdbParams h=localhost,u=root,p=anOKpwd --database cgds -# on toro: nohup ./compareDirectAndBulkDBMSload.pl --outputDir "/home/goldberg/data" --MySQLdbParams h=localhost,u=cbio,p=cbio --database cgds_arthur &> stdout.txt& -# on toro: uses ./build/WEB-INF/classes/org/mskcc/cbio/portal/util/portal.properties - - -# CONSTANTS -my $loadTypeFile = '/tmp/loadTypeFile.txt'; # TODO: put this file in a private (hidden) directory for cgds, so it won't be removed by other code -my $resetDBcmd = 'resetDb.pl'; -my $LOAD_FILE_TYPE = 'LOAD_FILE'; # name for LOAD FILE timing, and a hash key for storing the LOAD FILE timings -my $RECORD_COUNT = 'RECORD_COUNT'; # a hash key for storing the RECORD_COUNT info - -my @loadTypes = qw( directLoad bulkLoad ); -my $totalLoadTimeName = "Total load time"; - -# COMMAND LINE OPTIONS -my $cgdsScriptsDir; # cgds root directory -my $outputDir; # results output directory -my $MySQLdbParams; # params used by checksum -my $database; # database name - -# GLOBALS -my $checksumCompareOutput; - -my $cgdsScripts; - -my $usage = < ---outputDir ---MySQLdbParams ---database ---cgdsScripts -EndOfUsage - -main(); -sub main{ - - my $result = GetOptions ( - "cgdsScriptsDir=s" => \$cgdsScriptsDir, - "outputDir=s" => \$outputDir, - "MySQLdbParams=s" => \$MySQLdbParams, - "database=s" => \$database, - "cgdsScripts=s" => \$cgdsScripts, - ); - unless( $result and allDefined( $outputDir, $MySQLdbParams, $database ) ){ - # TODO: more detailed errors on command line options - print STDERR "Problem with command line options:\n"; - print STDERR $usage; - exit(1); - } - - # use current dir if $cgdsScriptsDir opt not provided - unless( defined( $cgdsScriptsDir ) ){ - $cgdsScriptsDir = File::Spec->rel2abs( File::Spec->curdir() ); - # print $cgdsScriptsDir, "\n"; - } - - $checksumCompareOutput = File::Spec->catfile( $outputDir, "checksumCompare.txt" ); - measureDBMSload(); - collectAndOutputDBMSloadMeasures(); -} - -# return true iff all arguments are defined -sub allDefined{ - my( @args ) = @_; - foreach my $a (@args){ - if( !defined($a) ){ - return 0; - } - } - return 1; -} - -# get list of scripts used by cgds; *.sh in the scripts directory -sub cgdsLoadScripts { - if( defined($cgdsScripts) ){ - # print "cgdsLoadScripts returning ", Dumper( split( ' ', $cgdsScripts) ); - return split( ' ', $cgdsScripts); - } else { - my $f = File::Util->new(); - my @dirs_and_files = $f->list_dir( $cgdsScriptsDir,'--files-only', '--pattern=\.sh$'); - # print "cgdsLoadScripts returning ", Dumper( @dirs_and_files ); - return @dirs_and_files - } -# return qw( all-breast.sh all-ovarian.sh all-test.sh all-gbm.sh all-prostate.sh ); -} - -# run all the scripts provided by cgdsLoadScripts, and run each script with the old, direct dbms writing approach -# and our new, bulk LOAD FILE approach. For each run of each script -# 1. measure its overall execution time and the execution time of some of its components, and -# 2. check that the run creates the same database -sub measureDBMSload { - - foreach my $loadScript (cgdsLoadScripts()) { - - # pair of checksum files for each dbms writing approach - my @checksumOutputFiles = (); - - # run script with direct and bulk load, saving output to file named 'script..perf.txt' - foreach my $loadType ( @loadTypes ) { - - # empty the dbms; don't want to time that - my $cmd = File::Spec->catfile( $cgdsScriptsDir, $resetDBcmd ); - print "Running '$cmd'.\n"; - system( $cmd ); - - # write to load script and load type dependent file - my $outFileName = 'performance.' . $loadScript . '.' . $loadType . '.out.txt'; - - # to control type of load, have importProfileData.pl read it from a file - system( "echo $loadType > $loadTypeFile" ); - - # measure total time - my $startTime = time(); - my $now_string = localtime; - - my $outputDirEscapeForShell = $outputDir; - # TODO: make this a little, portable sub - $outputDirEscapeForShell =~ s/ /\\ /g; - - my $outFile = File::Spec->catfile( $outputDirEscapeForShell, $outFileName ); - # was my $outFile = $outputDirEscapeForShell . $outFileName; - - $cmd = File::Spec->catfile( $cgdsScriptsDir, $loadScript ) . " > $outFile"; - # was $cmd = $cgdsScriptsDir . $loadScript . " > $outFile"; - print "Running '$cmd'.\n"; - system( $cmd ); - my $endTime = time(); - my $executionTimeMins = ($endTime - $startTime)/60; - - # remove $loadTypeFile - system( "rm $loadTypeFile" ); - - # take checkpoint of database, and save it into file with name that indicates the $loadScript and $loadType - my $checkSumCmd = "mk-table-checksum " . $MySQLdbParams . ' --databases ' . $database; - - my $checkSumOutfile = $outFile . ".checksum"; - system( "$checkSumCmd > $checkSumOutfile" ); - push @checksumOutputFiles, $checkSumOutfile; - - my $resultsFile = file( $outputDir, $outFileName ); # Path::Class::File object - open(my $resultsFH, ">>", $resultsFile ) or die "Can't open '$resultsFile' for appending: $!"; - - # save total time in same file, to be grabbed by collectAndOutputDBMSloadMeasures(); - print $resultsFH sprintf("%.1f", $executionTimeMins), "\t$totalLoadTimeName", "\t$now_string\t$loadScript\t$loadType\n"; - close( $resultsFH ); - - } - - # compare checkpoints from two different $loadType(s) - my $compareCheckSums = "mk-checksum-filter " . join( ' ', @checksumOutputFiles ); - print "Comparing checksums: $compareCheckSums\n"; - my $checksumComparison = `$compareCheckSums`; - - # if result is empty string, report good news, otherwise report that DBMSes differ - my $msg = "Compare checksums for '$loadScript':\n"; - if( $checksumComparison eq '' ){ - $msg .= "EXCELLENT, databases are identical.\n"; - } else { - $msg .= "ERROR, DATABASES DIFFER.\n"; - $msg .= $checksumComparison; - } - # output report to STDERR and append to file that tracks results of from multiple - print STDERR $msg; - - # label checksum comparison report with date timestamp - system( "date >> " . '"' . $checksumCompareOutput . '"' ); - open(my $checksumCompareFH, ">>", $checksumCompareOutput ) - or die "Can't open '$checksumCompareOutput' for appending: $!"; - print $checksumCompareFH $msg, "\n"; - close( $checksumCompareFH ); - - } -} - -# create matrix of data types vs. load type, save to data directory -# suitable for inserting into a spreadsheet -sub collectAndOutputDBMSloadMeasures { - - # create hash of timings as fn of data types, load type, & script - my $timings = {}; - - # hash of total response times, as fn of load type, & script - my $totalTimes = {}; - - my $resultsFile = file( $outputDir, 'performance.out.txt' ); - my $summarizedTimingsFH = $resultsFile->openw(); - # for debugging: $summarizedTimingsFH = *STDOUT; - - foreach my $loadScript (cgdsLoadScripts()) { - - my @dataTypes = (); - # COLLECT DATA - foreach my $loadType ( @loadTypes ) { - - # read file for this script, loadType - my $fileContainingMeasurements = File::Spec->catfile( $outputDir, 'performance.' . $loadScript . '.' . $loadType . '.out.txt' ); - # was: my $fileContainingMeasurements = $outputDir . 'performance.' . $loadScript . '.' . $loadType . '.out.txt'; - - open(my $in, "<", $fileContainingMeasurements ) - or die "Can't open '$fileContainingMeasurements' for reading: $!"; - - my $loadFileTime = 0; - my $tableName = 0; - my $numRecords = 0; - - while( <$in> ){ - chomp; - my $line = $_; - - # get right lines from output files - if( $line =~ /ImportProfileData/ ) { - my( $minutes, $constant, $measuredDataType, @rest) = split( "\t", $line ); - my $cgdsRoot = abs_path( File::Spec->updir($cgdsScriptsDir) ); - - $measuredDataType =~ s|$cgdsRoot|..|g; # get rid of dir - my @tmp = split( ' ', $measuredDataType ); # keep just first dir - $measuredDataType = $tmp[0]; - - $measuredDataType =~ s/ clobber.*$//g; # get rid of other args to org.mskcc.cbio.portal.scripts.ImportProfileData - - $timings->{$loadScript}->{$measuredDataType}->{$loadType} = $minutes; - - # sum "LOAD FILE" timings into $timings - $timings->{$loadScript}->{$measuredDataType}->{ $LOAD_FILE_TYPE } = $loadFileTime; - $loadFileTime = 0; - - $timings->{$loadScript}->{$measuredDataType}->{ $RECORD_COUNT } = $numRecords; - $numRecords = 0; - - # keep @dataTypes in order, but don't duplicate for each loadType - unless( grep( /$measuredDataType/, @dataTypes ) ){ - push @dataTypes, $measuredDataType; - } - } - - if( $line =~ /$totalLoadTimeName/ ) { - my( $minutes, $constant, @rest) = split( "\t", $line ); - $totalTimes->{$loadScript}->{$loadType} = $minutes; - } - - # sum "LOAD FILE" timings - if( $line =~ /$LOAD_FILE_TYPE/ ) { - # parse output from line ~146 of MySQLbulkLoader.java - my( $minutes, $constant, $table, $constant2, $recordCount, @rest ) = split( "\t", $line ); - $loadFileTime += $minutes; - $numRecords += $recordCount; - $tableName = $table; - } - - } - } - - # OUTPUT DATA - # START A NEW SET OF ROWS; OUTPUT HEADER WITH $loadScript - print $summarizedTimingsFH "\n$loadScript\n"; - - # add $LOAD_FILE_TYPE to the @loadTypes; each corresponds to a measurement in a column - my @loadTypesAndSubtypes = (@loadTypes, $LOAD_FILE_TYPE, $RECORD_COUNT); - - # OUTPUT HEADER WITH @loadTypesAndSubtypes; - print $summarizedTimingsFH "Data type\t", join( "\t", @loadTypesAndSubtypes ), "\n"; - - foreach my $dataType ( @dataTypes ) { - - print $summarizedTimingsFH $dataType; - foreach my $loadType ( @loadTypesAndSubtypes ) { - - # OUTPUT timing - print $summarizedTimingsFH "\t", $timings->{$loadScript}->{$dataType}->{$loadType}; - - } - - print $summarizedTimingsFH "\n"; - } - - # output TOTAL across @dataTypes - my $total = {}; - foreach my $loadType ( @loadTypesAndSubtypes ) { - $total->{$loadType} = 0.0; - foreach my $dataType ( @dataTypes ) { - $total->{$loadType} += $timings->{$loadScript}->{$dataType}->{$loadType}; - } - } - print $summarizedTimingsFH "Total"; - foreach my $loadType ( @loadTypesAndSubtypes ) { - print $summarizedTimingsFH "\t", $total->{$loadType}; - } - print $summarizedTimingsFH "\n"; - - # output measured TOTAL - print $summarizedTimingsFH "Total time for $loadScript"; - foreach my $loadType ( @loadTypesAndSubtypes ) { - if( defined( $totalTimes->{$loadScript}->{$loadType} )){ - print $summarizedTimingsFH "\t", $totalTimes->{$loadScript}->{$loadType}; - }else{ - print $summarizedTimingsFH "\t"; - } - } - print $summarizedTimingsFH "\n"; - - } - - # Close file - close( $summarizedTimingsFH ); - # open in OO and draw chart - print "Results written to '$resultsFile'\n"; -} diff --git a/core/src/main/scripts/convertCosmicVcfToMaf.pl b/core/src/main/scripts/convertCosmicVcfToMaf.pl deleted file mode 100755 index 47290ab596a..00000000000 --- a/core/src/main/scripts/convertCosmicVcfToMaf.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ConvertCosmicVcfToMaf @ARGV"); diff --git a/core/src/main/scripts/convertExpressionZscores.pl b/core/src/main/scripts/convertExpressionZscores.pl deleted file mode 100755 index 248c55c1e46..00000000000 --- a/core/src/main/scripts/convertExpressionZscores.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.NormalizeExpressionLevels @ARGV"); diff --git a/core/src/main/scripts/convertGeneIds.pl b/core/src/main/scripts/convertGeneIds.pl deleted file mode 100755 index aa7dd6dd291..00000000000 --- a/core/src/main/scripts/convertGeneIds.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ConvertGeneIds @ARGV"); diff --git a/core/src/main/scripts/convertGeneSymbols.pl b/core/src/main/scripts/convertGeneSymbols.pl deleted file mode 100755 index 34e435d6368..00000000000 --- a/core/src/main/scripts/convertGeneSymbols.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ConvertGeneSymbols @ARGV"); diff --git a/core/src/main/scripts/convertSvsImages.pl b/core/src/main/scripts/convertSvsImages.pl deleted file mode 100755 index 2c0c99611d1..00000000000 --- a/core/src/main/scripts/convertSvsImages.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx4g -cp $cp org.mskcc.cbio.portal.scripts.ConvertSvsImages @ARGV"); diff --git a/core/src/main/scripts/cutInvalidCases.pl b/core/src/main/scripts/cutInvalidCases.pl deleted file mode 100755 index ab4bfd4315f..00000000000 --- a/core/src/main/scripts/cutInvalidCases.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.CutInvalidCases @ARGV"); diff --git a/core/src/main/scripts/deleteAllCaseLists.pl b/core/src/main/scripts/deleteAllCaseLists.pl deleted file mode 100755 index bb0e9303ba2..00000000000 --- a/core/src/main/scripts/deleteAllCaseLists.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.DeleteAllSampleLists @ARGV"); diff --git a/core/src/main/scripts/downloadChromosomeSizes.py b/core/src/main/scripts/downloadChromosomeSizes.py deleted file mode 100755 index b483b107355..00000000000 --- a/core/src/main/scripts/downloadChromosomeSizes.py +++ /dev/null @@ -1,36 +0,0 @@ -#!/usr/bin/env python3 -# -*- coding: utf-8 -*- -""" -Created on Tue Aug 11 14:40:04 2020 - -@author: Sander Rodenburg, The Hyve -""" - -from pandas import DataFrame, read_csv -import json -from sys import argv, exit - -if len(argv) == 1: - outfile = 'importer/chromosome_sizes.json' -elif len(argv) == 2: - outfile = argv[1] -else: - exit('Usage: downloadChromosomeSizes.py [output.json]') - -build_sizes = {} -for build in ['hg19','hg38','mm10']: - sizes = read_csv('http://hgdownload.cse.ucsc.edu/goldenPath/%s/bigZips/%s.chrom.sizes' % (build, build), - sep='\t', header=None, index_col=False, names=['chromosome','size']) - # extract chr[0-9] and XY - sizes = sizes[sizes['chromosome'].str.match('chr([0-9]{1,2}|[XY])$')] - - # remove prefix - sizes['chromosome'] = sizes['chromosome'].str.replace('chr','') - - # parse to json - sizes = sizes.set_index('chromosome').to_json(orient='columns') - - build_sizes[build] = json.loads(sizes)['size'] - -with open(outfile,'w') as f: - json.dump(build_sizes, f) \ No newline at end of file diff --git a/core/src/main/scripts/dumpPortalInfo.pl b/core/src/main/scripts/dumpPortalInfo.pl deleted file mode 100755 index 3d19fbac34d..00000000000 --- a/core/src/main/scripts/dumpPortalInfo.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.DumpPortalInfo @ARGV"); diff --git a/core/src/main/scripts/env.pl b/core/src/main/scripts/env.pl deleted file mode 100755 index c50da9d3986..00000000000 --- a/core/src/main/scripts/env.pl +++ /dev/null @@ -1,57 +0,0 @@ -# Set up Environment for Running cBio Portal Java Tools - -use File::Spec; -use Cwd 'abs_path'; - -# check for JAVA_HOME -$JAVA_HOME = $ENV{JAVA_HOME}; -if ($JAVA_HOME eq "") { - die "JAVA_HOME Environment Variable is not set. Please set, and try again.\n"; -} - -# Check to see if PORTAL_HOME is set via command line arguments -if ($#ARGV >= 0) { - $arg0 = $ARGV[0]; - $index = index($arg0, "PORTAL_HOME"); - if ($index >= 0) { - $home = substr($arg0, 11); - $ENV{PORTAL_HOME}=$home; - } -} - -$portalHome = $ENV{PORTAL_HOME}; -$portalDataHome = $ENV{PORTAL_DATA_HOME}; -my $osCheck = $ENV{OS}; -my $pathDelim; - -if( $osCheck =~ /win/i){ - $pathDelim=";"; -}else{ - $pathDelim=":"; -} - -if ($portalHome eq "") { - die "PORTAL_HOME Environment Variable is not set. Please set, and try again.\n"; -} - -if ($portalDataHome eq "") { - die "PORTAL_DATA_HOME Environment Variable is not set. Please set, and try again.\n"; -} - -# Set up Classpath to use the scripts jar -sub locate_src_root { - # isolate the directory this code file is in - my ($volume, $script_dir, undef) = File::Spec->splitpath(__FILE__); - # go up from cbioportal/core/src/main/scripts/ to cbioportal/ - my $src_root_dir = File::Spec->catdir($script_dir, (File::Spec->updir()) x 4); - # reassamble the path and resolve updirs (/../) - return abs_path(File::Spec->catpath($volume, $src_root_dir)); -} -$src_root = locate_src_root(); -@jar_files = glob("$src_root/scripts/target/scripts-*.jar"); -if (scalar @jar_files != 1) { - die "Expected to find 1 scripts-*.jar, but found: " . scalar @jar_files; -} -$cp = pop @jar_files; - -return 1; diff --git a/core/src/main/scripts/env.sh b/core/src/main/scripts/env.sh deleted file mode 100755 index 38b7c08c354..00000000000 --- a/core/src/main/scripts/env.sh +++ /dev/null @@ -1,11 +0,0 @@ -#!/bin/bash - -# rewrite of env.pl in BASH -# -# example usage in BASH scripts: -# bash env.sh && echo "everthing is OK" || echo "we are missing variables" - -# checks to make sure the basic enviroment variables are set -[ ! -z "${JAVA_HOME}" ] && -[ ! -z "${PORTAL_HOME}" ] && -[ ! -z "${PORTAL_DATA_HOME}" ] && exit 0 || exit -1 diff --git a/core/src/main/scripts/envSimple.pl b/core/src/main/scripts/envSimple.pl deleted file mode 100755 index c0080156828..00000000000 --- a/core/src/main/scripts/envSimple.pl +++ /dev/null @@ -1,52 +0,0 @@ -# Set up Environment for Running cBio Portal Java Tools - -use File::Spec; -use Cwd 'abs_path'; - -# check for JAVA_HOME -$JAVA_HOME = $ENV{JAVA_HOME}; -if ($JAVA_HOME eq "") { - die "JAVA_HOME Environment Variable is not set. Please set, and try again.\n"; -} - -# Check to see if PORTAL_HOME is set via command line arguments -if ($#ARGV >= 0) { - $arg0 = $ARGV[0]; - $index = index($arg0, "PORTAL_HOME"); - if ($index >= 0) { - $home = substr($arg0, 11); - $ENV{PORTAL_HOME}=$home; - } -} - -$portalHome = $ENV{PORTAL_HOME}; -my $osCheck = $ENV{OS}; -my $pathDelim; - -if( $osCheck =~ /win/i){ - $pathDelim=";"; -}else{ - $pathDelim=":"; -} - -if ($portalHome eq "") { - die "PORTAL_HOME Environment Variable is not set. Please set, and try again.\n"; -} - -# Set up Classpath to use the scripts jar -sub locate_src_root { - # isolate the directory this code file is in - my ($volume, $script_dir, undef) = File::Spec->splitpath(__FILE__); - # go up from cbioportal/core/src/main/scripts/ to cbioportal/ - my $src_root_dir = File::Spec->catdir($script_dir, (File::Spec->updir()) x 4); - # reassamble the path and resolve updirs (/../) - return abs_path(File::Spec->catpath($volume, $src_root_dir)); -} -$src_root = locate_src_root(); -@jar_files = glob("$src_root/scripts/target/scripts-*.jar"); -if (scalar @jar_files != 1) { - die "Expected to find 1 scripts-*.jar, but found: " . scalar @jar_files; -} -$cp = pop @jar_files; - -return 1; diff --git a/core/src/main/scripts/exportProfile.pl b/core/src/main/scripts/exportProfile.pl deleted file mode 100755 index 8b056af0847..00000000000 --- a/core/src/main/scripts/exportProfile.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ExportProfileData @ARGV"); diff --git a/core/src/main/scripts/fetchBCRDataDict.sh b/core/src/main/scripts/fetchBCRDataDict.sh deleted file mode 100755 index 0e5b8d81765..00000000000 --- a/core/src/main/scripts/fetchBCRDataDict.sh +++ /dev/null @@ -1,5 +0,0 @@ -#!/bin/bash - -echo "downloading BCR Data Dictionary (XML)..." -echo -wget --no-check-certificate -O $PORTAL_DATA_HOME/reference-data/TCGA_BCR_DataDictionary.html https://tcga-data.nci.nih.gov/docs/dictionary/ diff --git a/core/src/main/scripts/filterCases.pl b/core/src/main/scripts/filterCases.pl deleted file mode 100755 index fca97387eb4..00000000000 --- a/core/src/main/scripts/filterCases.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.FilterCases @ARGV"); diff --git a/core/src/main/scripts/filterCases.sh b/core/src/main/scripts/filterCases.sh deleted file mode 100755 index a08186b1dbd..00000000000 --- a/core/src/main/scripts/filterCases.sh +++ /dev/null @@ -1,13 +0,0 @@ -./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_clinical.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_clinical.txt.new c0 r4 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/luad_tcga_pub_scna_hg18.seg $PORTAL_DATA_HOME/studies/luad/tcga/pub/luad_tcga_pub_scna_hg18.seg.new c0 r1 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/luad_tcga_pub_scna_minus_germline_cnv_hg19.seg $PORTAL_DATA_HOME/studies/luad/tcga/pub/luad_tcga_pub_scna_minus_germline_cnv_hg19.seg.new c0 r1 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_CNA.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_CNA.txt.new r0 c2 -./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_expression_median.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_expression_median.txt.new r0 c2 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_RNA_Seq_v2_expression_median.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_RNA_Seq_v2_expression_median.txt.new r0 c2 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_RNA_Seq_v2_mRNA_median_Zscores.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_RNA_Seq_v2_mRNA_median_Zscores.txt.new r0 c2 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_fusions.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_fusions.txt.new c3 r1 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_log2CNA.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_log2CNA.txt.new r0 c2 -./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_methylation_hm27.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_methylation_hm27.txt.new r0 c2 -./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_methylation_hm450.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_methylation_hm450.txt.new r0 c2 -#./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_mutations_extended.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_mutations_extended.txt.new c15 r1 -./filterCases.pl $PORTAL_DATA_HOME/studies/luad/tcga/pub/cases_manuscript.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_rppa.txt $PORTAL_DATA_HOME/studies/luad/tcga/pub/data_rppa.txt.new r0 c1 diff --git a/core/src/main/scripts/flagStudyForProductionPortalDeployment.py b/core/src/main/scripts/flagStudyForProductionPortalDeployment.py deleted file mode 100755 index 1b237ad34fa..00000000000 --- a/core/src/main/scripts/flagStudyForProductionPortalDeployment.py +++ /dev/null @@ -1,183 +0,0 @@ -#! /usr/bin/env python - -# ------------------------------------------------------------------------------ -# Script which flags a study within the triage portal for deployment into -# production portal. -# ------------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------------ -# imports -import sys -import getopt - -import gdata.docs.client -import gdata.docs.service -import gdata.spreadsheet.service - -import httplib2 -from oauth2client import client -from oauth2client.file import Storage -from oauth2client.client import flow_from_clientsecrets -from oauth2client.tools import run_flow, argparser - -# ------------------------------------------------------------------------------ -# globals - -# some file descriptors -ERROR_FILE = sys.stderr -OUTPUT_FILE = sys.stdout - -# column constants on google spreadsheet -TRIAGE_PORTAL_KEY = "triage-portal" -MSK_AUTOMATION_PORTAL_KEY = "msk-automation-portal" - -# ------------------------------------------------------------------------------ -# subroutines - -# ------------------------------------------------------------------------------ -# logs into google spreadsheet client - -def get_gdata_credentials(secrets, creds, scope, force=False): - storage = Storage(creds) - credentials = storage.get() - if credentials is None or credentials.invalid or force: - credentials = run_flow(flow_from_clientsecrets(secrets, scope=scope), storage, argparser.parse_args([])) - - if credentials.access_token_expired: - credentials.refresh(httplib2.Http()) - - return credentials - -def google_login(secrets, creds, user, pw, app_name): - - credentials = get_gdata_credentials(secrets, creds, ["https://spreadsheets.google.com/feeds"], False) - client = gdata.spreadsheet.service.SpreadsheetsService(additional_headers={'Authorization' : 'Bearer %s' % credentials.access_token}) - - # google spreadsheet - client.email = user - client.password = pw - client.source = app_name - client.ProgrammaticLogin() - - return client - -# ------------------------------------------------------------------------------ -# given a feed & feed name, returns its id - -def get_feed_id(feed, name): - - to_return = '' - - for entry in feed.entry: - if entry.title.text.strip() == name: - id_parts = entry.id.text.split('/') - to_return = id_parts[len(id_parts) - 1] - - return to_return - -# ------------------------------------------------------------------------------ -# gets a worksheet feed - -def get_worksheet_feed(client, ss, ws): - - ss_id = get_feed_id(client.GetSpreadsheetsFeed(), ss) - ws_id = get_feed_id(client.GetWorksheetsFeed(ss_id), ws) - - return client.GetListFeed(ss_id, ws_id) - -# ------------------------------------------------------------------------------ -# Flags a study on the given worksheet -# for deployment into the msk automation portal. - -def flag_study_for_production_portal_deployment(client, worksheet_feed, cancer_study_id, remove_from_triage): - - for entry in worksheet_feed.entry: - for key in entry.custom: - if entry.custom[key].text == cancer_study_id: - client.UpdateRow(entry, get_row_data(entry, remove_from_triage)) - return - -# ------------------------------------------------------------------------------ -# constructs new row entry - -def get_row_data(entry, remove_from_triage): - - dict = {} - for key in entry.custom: - if key == TRIAGE_PORTAL_KEY: - if remove_from_triage == 't': - dict[key] = 'r' - else: - dict[key] = '' - elif key == MSK_AUTOMATION_PORTAL_KEY: - dict[key] = 'x' - else: - dict[key] = entry.custom[key].text - return dict - -# ------------------------------------------------------------------------------ -# displays program usage (invalid args) - -def usage(): - print >> OUTPUT_FILE, ('flagStudyForProductionPortalDeployment.py --secrets-file [google secrets.json] --creds-file [oauth creds filename] --google-id --google-password ' + - '--google-spreadsheet --google-worksheet --cancer-study-id [STABLE_ID] [--remove-from-triage [t/f]]') - -# ------------------------------------------------------------------------------ -# the big deal main. - -def main(): - - # process command line options - try: - opts, args = getopt.getopt(sys.argv[1:], '', - ['secrets-file=', 'creds-file=', 'google-id=', 'google-password=', - 'google-spreadsheet=', 'google-worksheet=', - 'cancer-study-id=', 'remove-from-triage=']) - except getopt.error, msg: - print >> ERROR_FILE, msg - usage() - sys.exit(2) - - secrets_filename = '' - creds_filename = '' - google_id = '' - google_password = '' - google_spreadsheet = '' - google_worksheet = '' - cancer_study_id = '' - remove_from_triage = '' - - for o, a in opts: - if o == '--secrets-file': - secrets_filename = a - elif o == '--creds-file': - creds_filename = a - elif o == '--google-id': - google_id = a - elif o == '--google-password': - google_password = a - elif o == '--google-spreadsheet': - google_spreadsheet = a - elif o == '--google-worksheet': - google_worksheet = a - elif o == '--cancer-study-id': - cancer_study_id = a - elif o == '--remove-from-triage': - remove_from_triage = a - - if (secrets_filename == '' or creds_filename == '' or google_id == '' or google_password == '' or - google_spreadsheet == '' or google_worksheet == '' or cancer_study_id == ''): - usage() - sys.exit(2) - - # the point of the script - client = google_login(secrets_filename, creds_filename, google_id, google_password, sys.argv[1]) - worksheet_feed = get_worksheet_feed(client, google_spreadsheet, google_worksheet) - flag_study_for_production_portal_deployment(client, worksheet_feed, cancer_study_id, remove_from_triage) - -# ------------------------------------------------------------------------------ -# ready to roll - -if __name__ == '__main__': - main() diff --git a/core/src/main/scripts/generateMutationData.pl b/core/src/main/scripts/generateMutationData.pl deleted file mode 100755 index 0d586f232d3..00000000000 --- a/core/src/main/scripts/generateMutationData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1192M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.GenerateMutationData @ARGV"); diff --git a/core/src/main/scripts/hot-deploy.sh b/core/src/main/scripts/hot-deploy.sh deleted file mode 100755 index 7eb50c16c4f..00000000000 --- a/core/src/main/scripts/hot-deploy.sh +++ /dev/null @@ -1,19 +0,0 @@ -#!/bin/bash - -# convenience script to drive $PORTAL_HOME/portal/scripts/hotDeploy.py -# example usage: -# -# ./hot-deploy.sh miso.cbio.mskcc.org grossb v1.1.5 - -# setup the enviroment vars (maybe easier to source bashrc, etc, like . /home/user/.bashrc) -PYTHONHOME= -PYTHONPATH= -PORTAL_HOME= - -# host, user, rev (mercurial) get passed in command line -HOST=$1 -USER=$2 -REV=$3 - -# Note, this script was intended to be run via cron. Please ensure that the path to portal.properties.* -$PORTAL_HOME/portal/scripts/hotDeploy.py --credentials $PORTAL_HOME/src/main/resources/properties.txt --portal-properties $PORTAL_HOME/src/main/resources/portal.properties.GDAC --rev $REV --host $HOST --user $USER diff --git a/core/src/main/scripts/hotDeploy.py b/core/src/main/scripts/hotDeploy.py deleted file mode 100755 index 0a1581fb279..00000000000 --- a/core/src/main/scripts/hotDeploy.py +++ /dev/null @@ -1,229 +0,0 @@ -#! /usr/bin/env python - -# ------------------------------------------------------------------------------ -# Script which hot deploys cbio portal fixes. Script assumes -# properties file argument lives within $PORTAL_HOME/portal. This -# script will clobber any existing portal.properties file within $PORTAL_HOME/portal. - -# ------------------------------------------------------------------------------ -# imports -import os -import sys -import getopt -import subprocess -from mercurial import commands, ui, hg - -# ------------------------------------------------------------------------------ -# globals - -# some file descriptors -ERROR_FILE = sys.stderr -OUTPUT_FILE = sys.stdout - -# portal home -PORTAL_HOME = os.environ['PORTAL_HOME'] -if PORTAL_HOME is None: - print >> OUTPUT_FILE, 'PORTAL_HOME environment variable is not set, exiting.' - sys.exit(1) -PORTAL_PROJECT = PORTAL_HOME + os.sep + "portal" - -WAR_FILE_DEST = "/srv/www/sander-tomcat/tomcat6/webapps/" - -# fields in credentials - should match portal portal.properties -CGDS_DATABASE_USER = 'db.user' -CGDS_DATABASE_PW = 'db.password' -BITLY_USER = 'bitly.user' -BITLY_KEY = 'bitly.api_key' -CGDS_USERS_SPREADSHEET = 'users.spreadsheet' - -# ------------------------------------------------------------------------------ -# class definitions - -class Credentials(object): - def __init__(self, - cgds_database_user, cgds_database_pw, - bitly_user, bitly_key): - self.cgds_database_user = cgds_database_user - self.cgds_database_pw = cgds_database_pw - self.bitly_user = bitly_user - self.bitly_key = bitly_key - -# ------------------------------------------------------------------------------ -# functions - -# ------------------------------------------------------------------------------ -# parse credentials - -def get_portal_credentials(credentials): - - properties = {} - credentials_file = open(credentials, 'r') - for line in credentials_file: - line = line.strip() - # skip line if its blank or a comment - if len(line) == 0 or line.startswith('#') or line.startswith(CGDS_USERS_SPREADSHEET): - continue - # store name/value - property = line.split('=') - if (len(property) != 2): - print >> ERROR_FILE, 'Skipping invalid entry in property file: ' + line - continue - properties[property[0]] = property[1].strip() - credentials_file.close() - - # error check - if (CGDS_DATABASE_USER not in properties or len(properties[CGDS_DATABASE_USER]) == 0 or - CGDS_DATABASE_PW not in properties or len(properties[CGDS_DATABASE_PW]) == 0 or - BITLY_USER not in properties or len(properties[BITLY_USER]) == 0 or - BITLY_KEY not in properties or len(properties[BITLY_KEY]) == 0): - print >> ERROR_FILE, 'Missing one or more required properties, please check property file' - return None - - # return an instance of Credentials - return Credentials(properties[CGDS_DATABASE_USER], - properties[CGDS_DATABASE_PW], - properties[BITLY_USER], - properties[BITLY_KEY]) - -# ------------------------------------------------------------------------------ -# build war with given properties file - -def deploy_war(host, user): - - # war file to scp - war_file = PORTAL_PROJECT + os.sep + "build" + os.sep + "war" + os.sep + "*.war" - # setup the scp command & execute - scp_command = "scp %s %s@%s:%s" % (war_file, user, host, WAR_FILE_DEST) - scp_process = subprocess.call(scp_command, shell=True) - if scp_process != 0: - print >> ERROR_FILE, "Error secure copying file, aborting." - sys.exit(1) - -# ------------------------------------------------------------------------------ -# build war with given credentials & portal properties file - -def build_war(portal_credentials, portal_properties): - - # setup portal.properties - portal_properties = PORTAL_PROJECT + os.sep + "portal.properties" - if os.path.exists(portal_properties): - print >> OUTPUT_FILE, "Clobbering %s" % portal_properties - - # we are going to create a new portal.properties file using - # portal_properties as the template and get credentials from portal_credentials - portal_properties_file = open(portal_properties, 'w') - portal_properties_file = open(portal_properties, 'r') - for line in portal_properties_file: - new_line = line - if line.startswith(CGDS_DATABASE_USER): - new_line = '%s=%s\n' % (CGDS_DATABASE_USER, portal_credentials.cgds_database_user) - elif line.startswith(CGDS_DATABASE_PW): - new_line = '%s=%s\n' % (CGDS_DATABASE_PW, portal_credentials.cgds_database_pw) - elif line.startswith(BITLY_USER): - new_line = '%s=%s\n' % (BITLY_USER, portal_credentials.bitly_user) - elif line.startswith(BITLY_KEY): - new_line = '%s=%s\n' % (BITLY_KEY, portal_credentials.bitly_key) - portal_properties_file.write(new_line); - portal_properties_file.close() - portal_properties_file.close() - - # run ant - os.chdir(PORTAL_PROJECT) - - ant_process = subprocess.call('ant clean war', shell=True) - if ant_process != 0: - print >> ERROR_FILE, "Error building war file, aborting." - sys.exit(1) - -# ------------------------------------------------------------------------------ -# update repos to proper tag - -def update_repos(rev): - - try: - print >> OUTPUT_FILE, 'accessing repository: %s' % PORTAL_HOME - repos = hg.repository(ui.ui(), PORTAL_HOME) - print >> OUTPUT_FILE, 'updating to revision: %s' % rev - commands.update(ui.ui(), repos, rev=rev, check=True) - except Exception, e: - print >> ERROR_FILE, "Error: %s" % e - print >> ERROR_FILE, "Aborting." - sys.exit(1) - -# ------------------------------------------------------------------------------ -# displays program usage (invalid args) - -def usage(): - print >> OUTPUT_FILE, ('hotDeploy.py --credentials [credentials] ' + - '--portal-properties-file [build props] ' + - '--rev [tag] --host [deploy location] --user [user on host]') - -# ------------------------------------------------------------------------------ -# the big deal main. - -def main(): - - # parse command line options - try: - opts, args = getopt.getopt(sys.argv[1:], '', ['credentials=', 'portal-properties=', 'rev=', 'host=', 'user=']) - except getopt.error, msg: - print >> ERROR_FILE, msg - usage() - sys.exit(1) - - # process the options - credentials = '' - portal_properties = '' - rev = '' - host = '' - user = '' - - for o, a in opts: - if o == '--credentials': - credentials = a - elif o == '--portal-properties': - portal_properties = a - elif o == '--rev': - rev = a - elif o == '--host': - host = a - elif o == '--user': - user = a - if (credentials == '' or portal_properties == '' or rev == '' or host == '' or user == ''): - usage() - sys.exit(1) - - # check existence of credentials - if not os.path.exists(credentials): - print >> ERROR_FILE, 'credentials file does not exist: ' + credentials - sys.exit(2) - - # check existence of portal properties - if not os.path.exists(portal_properties): - print >> ERROR_FILE, 'portal properties does not exist: ' + portal_properties - sys.exit(2) - - # get portal credentials - print >> OUTPUT_FILE, 'Reading credentials file: ' + credentials - portal_credentials = get_portal_credentials(credentials) - if not portal_credentials: - print >> ERROR_FILE, 'Error reading %s, exiting' % credentials - sys.exit(2) - - # lets update our portal repos to proper tag and build a new war - print >> OUTPUT_FILE, 'Updating mercurial repository to rev: %s' % rev - update_repos(rev) - - # build war - print >> OUTPUT_FILE, 'Building war file using properties file: %s' % portal_properties - build_war(portal_credentials, portal_properties) - - # deploy - print >> OUTPUT_FILE, 'Deploying war file to: %s@%s:%s' % (user, host, WAR_FILE_DEST) - deploy_war(host, user) - -# ------------------------------------------------------------------------------ -# ready to roll - -if __name__ == '__main__': - main() diff --git a/core/src/main/scripts/import-portal-users.sh b/core/src/main/scripts/import-portal-users.sh deleted file mode 100644 index a1026de883b..00000000000 --- a/core/src/main/scripts/import-portal-users.sh +++ /dev/null @@ -1,12 +0,0 @@ -#!/bin/bash - -# setup the enviroment vars (maybe easier to source bashrc, etc, like . /home/user/.bashrc) -PYTHONHOME= -PYTHONPATH= -PORTAL_HOME= - -# Note, this script was intended to be run via cron. Please ensure that the path to portal.properties.* -# points to an unchanging location and version of the file. The path below is only meant for illustrative purposes. -$PORTAL_HOME/portal/scripts/importUsers.py --properties-file $PORTAL_HOME/portal/portal.properties.GDAC --send-email-confirm true 2>&1 > /dev/null -$PORTAL_HOME/portal/scripts/importUsers.py --properties-file $PORTAL_HOME/portal/portal.properties.PRIVATE --send-email-confirm true 2>&1 > /dev/null -$PORTAL_HOME/portal/scripts/importUsers.py --properties-file $PORTAL_HOME/portal/portal.properties.SU2C --send-email-confirm true 2>&1 > /dev/null diff --git a/core/src/main/scripts/import-prad-su2c-caises-xml.sh b/core/src/main/scripts/import-prad-su2c-caises-xml.sh deleted file mode 100644 index ed210e0bbac..00000000000 --- a/core/src/main/scripts/import-prad-su2c-caises-xml.sh +++ /dev/null @@ -1 +0,0 @@ -importCaisesXml $PORTAL_DATA_HOME/studies/prad/su2c/data_clinical_caises.xml $PORTAL_DATA_HOME/studies/prad/su2c/patient_id_mapping.txt $PORTAL_DATA_HOME/studies/prad/su2c/meta_clinical_caises.txt \ No newline at end of file diff --git a/core/src/main/scripts/importAccessRights.pl b/core/src/main/scripts/importAccessRights.pl deleted file mode 100755 index 51eb1f3eb37..00000000000 --- a/core/src/main/scripts/importAccessRights.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportUserAccessRights @ARGV"); diff --git a/core/src/main/scripts/importCancerStudy.pl b/core/src/main/scripts/importCancerStudy.pl deleted file mode 100755 index 2f14f56ac8e..00000000000 --- a/core/src/main/scripts/importCancerStudy.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportCancerStudy @ARGV"); diff --git a/core/src/main/scripts/importCaseList.pl b/core/src/main/scripts/importCaseList.pl deleted file mode 100755 index e30225149c4..00000000000 --- a/core/src/main/scripts/importCaseList.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportCaisesClinicalXML @ARGV"); diff --git a/core/src/main/scripts/importCaseListData.pl b/core/src/main/scripts/importCaseListData.pl deleted file mode 100755 index 4405dbbcd19..00000000000 --- a/core/src/main/scripts/importCaseListData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportSampleList @ARGV"); diff --git a/core/src/main/scripts/importClinicalData.pl b/core/src/main/scripts/importClinicalData.pl deleted file mode 100755 index 27cde835c2e..00000000000 --- a/core/src/main/scripts/importClinicalData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportClinicalData @ARGV"); diff --git a/core/src/main/scripts/importCopyNumberSegmentData.pl b/core/src/main/scripts/importCopyNumberSegmentData.pl deleted file mode 100755 index 5077069b697..00000000000 --- a/core/src/main/scripts/importCopyNumberSegmentData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/perl -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportCopyNumberSegmentData @ARGV"); diff --git a/core/src/main/scripts/importCosmicData.pl b/core/src/main/scripts/importCosmicData.pl deleted file mode 100755 index 9e716e1862a..00000000000 --- a/core/src/main/scripts/importCosmicData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportCosmicData @ARGV"); diff --git a/core/src/main/scripts/importDrugData.pl b/core/src/main/scripts/importDrugData.pl deleted file mode 100755 index f1aef47d5bd..00000000000 --- a/core/src/main/scripts/importDrugData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.drug.ImportDrugBank $portalDataHome/reference-data/drugbank/drugbank.xml $portalDataHome/reference-data/drugbank/target_links.csv"); diff --git a/core/src/main/scripts/importGenePanel.pl b/core/src/main/scripts/importGenePanel.pl deleted file mode 100755 index 2a74e6cd8b1..00000000000 --- a/core/src/main/scripts/importGenePanel.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportGenePanel @ARGV"); diff --git a/core/src/main/scripts/importGenes.pl b/core/src/main/scripts/importGenes.pl deleted file mode 100755 index 1efce819c75..00000000000 --- a/core/src/main/scripts/importGenes.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportGeneData @ARGV"); diff --git a/core/src/main/scripts/importGenesetData.pl b/core/src/main/scripts/importGenesetData.pl deleted file mode 100755 index 0554938cccc..00000000000 --- a/core/src/main/scripts/importGenesetData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportGenesetData @ARGV"); diff --git a/core/src/main/scripts/importGenesetHierarchy.pl b/core/src/main/scripts/importGenesetHierarchy.pl deleted file mode 100755 index c7a7275d846..00000000000 --- a/core/src/main/scripts/importGenesetHierarchy.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportGenesetHierarchy @ARGV"); diff --git a/core/src/main/scripts/importGistic.pl b/core/src/main/scripts/importGistic.pl deleted file mode 100755 index 1183ae3f59b..00000000000 --- a/core/src/main/scripts/importGistic.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportGisticData @ARGV"); diff --git a/core/src/main/scripts/importHprd.pl b/core/src/main/scripts/importHprd.pl deleted file mode 100755 index e8a8271a34c..00000000000 --- a/core/src/main/scripts/importHprd.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportHprd @ARGV"); diff --git a/core/src/main/scripts/importMicroRNAIDs.pl b/core/src/main/scripts/importMicroRNAIDs.pl deleted file mode 100755 index bfae553cdc9..00000000000 --- a/core/src/main/scripts/importMicroRNAIDs.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportMicroRNAIDs @ARGV"); diff --git a/core/src/main/scripts/importMicroRna.pl b/core/src/main/scripts/importMicroRna.pl deleted file mode 100755 index 6920abf91bf..00000000000 --- a/core/src/main/scripts/importMicroRna.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportMicroRnaData @ARGV"); diff --git a/core/src/main/scripts/importMutSig.pl b/core/src/main/scripts/importMutSig.pl deleted file mode 100755 index 419d02c2ae6..00000000000 --- a/core/src/main/scripts/importMutSig.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportMutSigData @ARGV"); diff --git a/core/src/main/scripts/importPiHelperData.pl b/core/src/main/scripts/importPiHelperData.pl deleted file mode 100755 index ce431eb36d9..00000000000 --- a/core/src/main/scripts/importPiHelperData.pl +++ /dev/null @@ -1,5 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.drug.ImportPiHelperData $portalDataHome/reference-data/pihelper/drugs.tsv $portalDataHome/reference-data/pihelper/drugtargets.tsv"); - diff --git a/core/src/main/scripts/importProfileData.pl b/core/src/main/scripts/importProfileData.pl deleted file mode 100755 index a2fcc04a7d3..00000000000 --- a/core/src/main/scripts/importProfileData.pl +++ /dev/null @@ -1,29 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -$startTime = time; -my $loadTypeFile = '/tmp/loadTypeFile.txt'; -# $loadTypeFile is used by compareDirectAndBulkDBMSload.pl to control the load type used by *.sh files it tests -# it writes the load type into $loadTypeFile, which is read here. -# $loadTypeFile is awkward; perhaps a standard importProfileData.pl could ignore it, and then, if we want to make DBMS load measurements, -# we could temporarily replace importProfileData.pl; but that's awkward too - -unless( 2 <= $#ARGV ){ - die "Insufficient number of arguments in '", join( ' ', @ARGV ), "'\n"; -} -my $args = join( ' ', @ARGV ); - -# if $loadTypeFile exists then use it to determine $loadType, else do bulkload -if( -e $loadTypeFile ){ - open(my $in, "<", $loadTypeFile ) or die "Can't open $loadTypeFile: $!"; - my $loadType = <$in>; - print "Load type is '$loadType'.\n"; - system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportProfileData $args --loadMode $loadType"); - $elapsedMin = (time - $startTime)/60; - print sprintf("%.1f", $elapsedMin), "\t(min) to run ImportProfileData on\t", "$args --loadMode $loadType"; -}else{ - # $loadTypeFile does not exist, so compareDirectAndBulkDBMSload.pl is not being run - my $cmd = "$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportProfileData $args --loadMode bulkLoad"; - print "-DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportProfileData $args --loadMode bulkLoad\n"; - system( $cmd ); -} diff --git a/core/src/main/scripts/importReferenceGenome.pl b/core/src/main/scripts/importReferenceGenome.pl deleted file mode 100755 index 1b76aea642c..00000000000 --- a/core/src/main/scripts/importReferenceGenome.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportReferenceGenome @ARGV"); diff --git a/core/src/main/scripts/importSif.pl b/core/src/main/scripts/importSif.pl deleted file mode 100755 index 3749d3a7515..00000000000 --- a/core/src/main/scripts/importSif.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportSif @ARGV"); diff --git a/core/src/main/scripts/importTimelineData.pl b/core/src/main/scripts/importTimelineData.pl deleted file mode 100644 index 29cf4a34068..00000000000 --- a/core/src/main/scripts/importTimelineData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportTimelineData @ARGV"); diff --git a/core/src/main/scripts/importTypesOfCancer.pl b/core/src/main/scripts/importTypesOfCancer.pl deleted file mode 100755 index f21ae985ef1..00000000000 --- a/core/src/main/scripts/importTypesOfCancer.pl +++ /dev/null @@ -1,5 +0,0 @@ -#!/usr/bin/env perl -# author: Arthur Goldberg, goldberg@cbio.mskcc.org -require "../scripts/env.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ImportTypesOfCancers @ARGV"); diff --git a/core/src/main/scripts/importUsers.py b/core/src/main/scripts/importUsers.py deleted file mode 100755 index 4be76706e0b..00000000000 --- a/core/src/main/scripts/importUsers.py +++ /dev/null @@ -1,609 +0,0 @@ -#! /usr/bin/env python - -# ------------------------------------------------------------------------------ -# Script which adds new users fram google spreadsheet into the the cgds -# user table. The following properties must be specified in portal.properties: -# -# db.name -# db.user -# db.password -# db.host -# google.id -# google.pw -# users.spreadsheet -# users.worksheet -# -# The script considers all users in the google spreadsheet -# that have an "APPROVED" value in the "Status (APPROVED or BLANK)" column. If that -# user does not exist in the user table of the cgds database, the user will be added -# to both the user table and authority table. In addition, a confirmation email will -# be sent to the user notifying them of their acct activation. -# -# ------------------------------------------------------------------------------ -# imports -import os -import sys -import time -import getopt -import MySQLdb - -import smtplib -import gdata.docs.client -import gdata.docs.service -import gdata.spreadsheet.service - -import httplib2 -from oauth2client import client -from oauth2client.file import Storage -from oauth2client.client import flow_from_clientsecrets -from oauth2client.tools import run_flow, argparser - -from email.MIMEMultipart import MIMEMultipart -from email.MIMEBase import MIMEBase -from email.MIMEText import MIMEText -from email.Utils import COMMASPACE, formatdate -from email import Encoders - -# ------------------------------------------------------------------------------ -# globals - -# some file descriptors -ERROR_FILE = sys.stderr -OUTPUT_FILE = sys.stdout - -# fields in portal.properties -CGDS_DATABASE_HOST = 'db.host' -CGDS_DATABASE_NAME = 'db.portal_db_name' -CGDS_DATABASE_USER = 'db.user' -CGDS_DATABASE_PW = 'db.password' -GOOGLE_ID = 'google.id' -GOOGLE_PW = 'google.pw' -CGDS_USERS_SPREADSHEET = 'users.spreadsheet' -CGDS_USERS_WORKSHEET = 'users.worksheet' -IMPORTER_SPREADSHEET = 'importer.spreadsheet' - -# Worksheet that contains email contents -IMPORTER_WORKSHEET = 'import_user_email' - -# Worksheet that contains portal names -ACCESS_CONTROL_WORKSHEET = 'access_control' - -# column constants on google spreadsheet -FULLNAME_KEY = "fullname" -INST_EMAIL_KEY = "institutionalemailaddress" -MSKCC_EMAIL_KEY = "mskccemailaddress" -OPENID_EMAIL_KEY = "googleoropenidaddress" -STATUS_KEY = "statusapprovedorblank" -AUTHORITIES_KEY = "authoritiesalloralltcgaandorsemicolondelimitedcancerstudylist" -LAB_PI_KEY = "labpi" -TIMESTAMP_KEY = "timestamp" -SUBJECT_KEY = "subject" -BODY_KEY = "body" -PORTAL_NAME_KEY = 'portalname' -SPREADSHEET_NAME_KEY = 'spreadsheetname' - -# possible values in status column -STATUS_APPROVED = "APPROVED" - -DEFAULT_AUTHORITIES = "PUBLIC;EXTENDED;MSKPUB" - -# consts used in email -MSKCC_EMAIL_SUFFIX = "@mskcc.org" -SMTP_SERVER = "cbio.mskcc.org" -MESSAGE_FROM = "cbioportal-access@cbio.mskcc.org" -MESSAGE_BCC = [] - - - -# ------------------------------------------------------------------------------ -# class definitions - -class PortalProperties(object): - def __init__(self, - cgds_database_host, - cgds_database_name, cgds_database_user, cgds_database_pw, - google_id, google_pw, google_spreadsheet, google_worksheet,google_importer_spreadsheet): - self.cgds_database_host = cgds_database_host - self.cgds_database_name = cgds_database_name - self.cgds_database_user = cgds_database_user - self.cgds_database_pw = cgds_database_pw - self.google_id = google_id - self.google_pw = google_pw - self.google_spreadsheet = google_spreadsheet - self.google_worksheet = google_worksheet - self.google_importer_spreadsheet = google_importer_spreadsheet - -class User(object): - def __init__(self, inst_email, google_email, name, enabled, authorities): - self.inst_email = inst_email.lower() - self.google_email = google_email.lower() - self.name = name - self.enabled = enabled - self.authorities = authorities - -# ------------------------------------------------------------------------------ -# functions - -# -# Uses smtplib to send email. -# -def send_mail(to, subject, body, server=SMTP_SERVER): - - assert type(to)==list - - msg = MIMEMultipart() - msg['Subject'] = subject - msg['From'] = MESSAGE_FROM - msg['To'] = COMMASPACE.join(to) - msg['Date'] = formatdate(localtime=True) - - msg.attach(MIMEText(body)) - - # combine to and bcc lists for sending - combined_to_list = [] - for to_name in to: - combined_to_list.append(to_name) - for bcc_name in MESSAGE_BCC: - combined_to_list.append(bcc_name) - - smtp = smtplib.SMTP(server) - smtp.sendmail(MESSAGE_FROM, combined_to_list, msg.as_string() ) - smtp.close() - - -# ------------------------------------------------------------------------------ - -# logs into google spreadsheet client - -def get_gdata_credentials(secrets, creds, scope, force=False): - storage = Storage(creds) - credentials = storage.get() - if credentials is None or credentials.invalid or force: - credentials = run_flow(flow_from_clientsecrets(secrets, scope=scope), storage, argparser.parse_args([])) - - if credentials.access_token_expired: - credentials.refresh(httplib2.Http()) - - return credentials - -def google_login(secrets, creds, user, pw, app_name): - - credentials = get_gdata_credentials(secrets, creds, ["https://spreadsheets.google.com/feeds"], False) - client = gdata.spreadsheet.service.SpreadsheetsService(additional_headers={'Authorization' : 'Bearer %s' % credentials.access_token}) - - # google spreadsheet - client.email = user - client.password = pw - client.source = app_name - client.ProgrammaticLogin() - - return client - - -# ------------------------------------------------------------------------------ -# given a feed & feed name, returns its id -# -def get_feed_id(feed, name): - - to_return = '' - - for entry in feed.entry: - if entry.title.text.strip() == name: - id_parts = entry.id.text.split('/') - to_return = id_parts[len(id_parts) - 1] - - return to_return - -# ------------------------------------------------------------------------------ -# gets a worksheet feed - -def get_worksheet_feed(client, ss, ws): - - ss_id = get_feed_id(client.GetSpreadsheetsFeed(), ss) - ws_id = get_feed_id(client.GetWorksheetsFeed(ss_id), ws) - - return client.GetListFeed(ss_id, ws_id) - -# ------------------------------------------------------------------------------ -# insert new users into table - this list does not contain users already in table - -def insert_new_users(cursor, new_user_list): - - try: - for user in new_user_list: - print >> OUTPUT_FILE, "new user: %s" % user.google_email; - cursor.executemany("insert into users values(%s, %s, %s)", - [(user.google_email.lower(), user.name, user.enabled) for user in new_user_list]) - for user in new_user_list: - # authorities is semicolon delimited - authorities = user.authorities - cursor.executemany("insert into authorities values(%s, %s)", - [(user.google_email.lower(), authority) for authority in authorities]) - except MySQLdb.Error, msg: - print >> OUTPUT_FILE, msg - print >> ERROR_FILE, msg - return False - - return True - -# ------------------------------------------------------------------------------ -# get current users from database - -def get_current_user_map(cursor): - - # map that we are returning - # key is the email address of the user (primary key) and value is a User object - to_return = {} - - # recall each tuple in user table is ['EMAIL', 'NAME', 'ENABLED'] & - # no tuple can contain nulls - try: - cursor.execute('select * from users') - for row in cursor.fetchall(): - to_return[row[0].lower()] = User(row[0].lower(), row[0].lower(), row[1], row[2], 'not_used_here') - except MySQLdb.Error, msg: - print >> ERROR_FILE, msg - return None - - return to_return - -# ------------------------------------------------------------------------------ -# get current user authorities - -def get_user_authorities(cursor, google_email): - - # list of authorities (cancer studies) we are returning -- as a set - to_return = [] - - # recall each tuple in authorities table is ['EMAIL', 'AUTHORITY'] - # no tuple can contain nulls - try: - cursor.execute('select * from authorities where email = (%s)', [google_email]) - for row in cursor.fetchall(): - to_return.append(row[1]) - except MySQLdb.Error, msg: - print >> ERROR_FILE, msg - return None - - return to_return - -# ------------------------------------------------------------------------------ -# get current users from google spreadsheet - -def get_new_user_map(spreadsheet, worksheet_feed, current_user_map, portal_name,mskcc_user_spreadsheet): - - # map that we are returning - # key is the institutional email address + google (in case user has multiple google ids) - # of the user and value is a User object - to_return = {} - - for entry in worksheet_feed.entry: - # we are only concerned with 'APPROVED' entries - if (entry.custom[STATUS_KEY].text is not None and - entry.custom[STATUS_KEY].text.strip() == STATUS_APPROVED): - if spreadsheet == mskcc_user_spreadsheet: - inst_email = entry.custom[MSKCC_EMAIL_KEY].text.strip().lower() - google_email = entry.custom[MSKCC_EMAIL_KEY].text.strip().lower() - else: - inst_email = entry.custom[INST_EMAIL_KEY].text.strip().lower() - google_email = entry.custom[OPENID_EMAIL_KEY].text.strip().lower() - name = entry.custom[FULLNAME_KEY].text.strip() - authorities = entry.custom[AUTHORITIES_KEY].text.strip() - # do not add entry if this entry is a current user - # we lowercase google account because entries added to mysql are lowercased. - if google_email.lower() not in current_user_map: - if authorities[-1:] == ';': - authorities = authorities[:-1] - if google_email.lower() in to_return: - # there may be multiple entries per email address - # in google spreadsheet, combine entries - user = to_return[google_email.lower()] - user.authorities.extend([portal_name + ':' + au for au in authorities.split(';')]) - to_return[google_email.lower()] = user - else: - to_return[google_email] = User(inst_email, google_email, name, 1, - [portal_name + ':' + au for au in authorities.split(';')]) - - return to_return - -# ------------------------------------------------------------------------------ -# get all users from google spreadsheet. note only inst & google email is returned - -def get_all_user_map(spreadsheet, worksheet_feed,mskcc_user_spreadsheet): - - # map that we are returning - # key is the institutional email address + google (in case user has multiple google ids) - # of the user and value is a User object - to_return = {} - - for entry in worksheet_feed.entry: - if spreadsheet == mskcc_user_spreadsheet: - inst_email = entry.custom[MSKCC_EMAIL_KEY].text.strip().lower() - google_email = entry.custom[MSKCC_EMAIL_KEY].text.strip().lower() - else: - inst_email = entry.custom[INST_EMAIL_KEY].text.strip().lower() - google_email = entry.custom[OPENID_EMAIL_KEY].text.strip().lower() - to_return[google_email] = User(inst_email, google_email, "not_used", 1, "not_used") - - return to_return - -# ------------------------------------------------------------------------------ -# get db connection -def get_db_connection(portal_properties): - - # try and create a connection to the db - try: - connection = MySQLdb.connect(host=portal_properties.cgds_database_host, port=3306, - user=portal_properties.cgds_database_user, - passwd=portal_properties.cgds_database_pw, - db=portal_properties.cgds_database_name) - except MySQLdb.Error, msg: - print >> ERROR_FILE, msg - return None - - return connection - - -# ------------------------------------------------------------------------------ -# parse portal.properties - -def get_portal_properties(portal_properties_filename): - - properties = {} - portal_properties_file = open(portal_properties_filename, 'r') - for line in portal_properties_file: - line = line.strip() - # skip line if its blank or a comment - if len(line) == 0 or line.startswith('#'): - continue - # store name/value - property = line.split('=') - # spreadsheet url contains an '=' sign - if line.startswith(CGDS_USERS_SPREADSHEET): - property = [property[0], line[line.index('=')+1:len(line)]] - if (len(property) != 2): - print >> ERROR_FILE, 'Skipping invalid entry in property file: ' + line - continue - properties[property[0]] = property[1].strip() - portal_properties_file.close() - - # error check - if (CGDS_DATABASE_HOST not in properties or len(properties[CGDS_DATABASE_HOST]) == 0 or - CGDS_DATABASE_NAME not in properties or len(properties[CGDS_DATABASE_NAME]) == 0 or - CGDS_DATABASE_USER not in properties or len(properties[CGDS_DATABASE_USER]) == 0 or - CGDS_DATABASE_PW not in properties or len(properties[CGDS_DATABASE_PW]) == 0 or - GOOGLE_ID not in properties or len(properties[GOOGLE_ID]) == 0 or - GOOGLE_PW not in properties or len(properties[GOOGLE_PW]) == 0 or - CGDS_USERS_SPREADSHEET not in properties or len(properties[CGDS_USERS_SPREADSHEET]) == 0 or - CGDS_USERS_WORKSHEET not in properties or len(properties[CGDS_USERS_WORKSHEET]) == 0 or - IMPORTER_SPREADSHEET not in properties or len(properties[IMPORTER_SPREADSHEET]) == 0): - print >> ERROR_FILE, 'Missing one or more required properties, please check property file' - return None - - # return an instance of PortalProperties - return PortalProperties(properties[CGDS_DATABASE_HOST], - properties[CGDS_DATABASE_NAME], - properties[CGDS_DATABASE_USER], - properties[CGDS_DATABASE_PW], - properties[GOOGLE_ID], - properties[GOOGLE_PW], - properties[CGDS_USERS_SPREADSHEET], - properties[CGDS_USERS_WORKSHEET], - properties[IMPORTER_SPREADSHEET]) - -# ------------------------------------------------------------------------------ -# adds new users from the google spreadsheet into the cgds portal database -# returns new user map if users have been inserted, None otherwise - -def manage_users(spreadsheet, cursor, worksheet_feed, portal_name, mskcc_user_spreadsheet): - - # get map of current portal users - print >> OUTPUT_FILE, 'Getting list of current portal users' - current_user_map = get_current_user_map(cursor) - if current_user_map is not None: - print >> OUTPUT_FILE, 'We have found %s current portal users' % len(current_user_map) - else: - print >> OUTPUT_FILE, 'Error reading user table' - return None - - # get list of new users and insert - print >> OUTPUT_FILE, 'Checking for new users' - new_user_map = get_new_user_map(spreadsheet, worksheet_feed, current_user_map, portal_name, mskcc_user_spreadsheet) - if (len(new_user_map) > 0): - print >> OUTPUT_FILE, 'We have %s new user(s) to add' % len(new_user_map) - success = insert_new_users(cursor, new_user_map.values()) - if success: - print >> OUTPUT_FILE, 'Successfully inserted new users in database' - return new_user_map - else: - print >> OUTPUT_FILE, 'Error inserting new users in database' - return None - else: - print >> OUTPUT_FILE, 'No new users to insert, exiting' - return None - -# ------------------------------------------------------------------------------ -# updates user study access -def update_user_authorities(spreadsheet, cursor, worksheet_feed, portal_name, mskcc_user_spreadsheet): - - # get map of current portal users - print >> OUTPUT_FILE, 'Getting list of current portal users from spreadsheet' - all_user_map = get_new_user_map(spreadsheet, worksheet_feed, {}, portal_name, mskcc_user_spreadsheet) - if all_user_map is None: - return None; - print >> OUTPUT_FILE, 'Updating authorities for each user in current portal user list' - for user in all_user_map.values(): - worksheet_authorities = set(user.authorities) - db_authorities = set(get_user_authorities(cursor, user.google_email)) - try: - cursor.executemany("insert into authorities values(%s, %s)", - [(user.google_email, authority) for authority in worksheet_authorities - db_authorities]) - except MySQLdb.Error, msg: - print >> ERROR_FILE, msg - -# ------------------------------------------------------------------------------ -# Adds unknown users to user spreadsheet. MSKCC users are given default access. -# during MSK signon. If this happens, we want to make sure they get into the google -# spreadsheet for tracking purposes. -def add_unknown_users_to_spreadsheet(client, cursor, spreadsheet, worksheet, mskcc_user_spreadsheet): - - # get map of all users in google spreadsheet and portal database - worksheet_feed = get_worksheet_feed(client, spreadsheet, worksheet) - google_spreadsheet_user_map = get_all_user_map(spreadsheet, worksheet_feed, mskcc_user_spreadsheet) - portal_db_user_map = get_current_user_map(cursor) - current_time = time.strftime("%m/%d/%y %H:%M:%S") - # for each user in portal database not in google spreadsheet, insert user into google spreadsheet - for email in portal_db_user_map.keys(): - if email.endswith(MSKCC_EMAIL_SUFFIX) and email not in google_spreadsheet_user_map: - user = portal_db_user_map[email] - print >> OUTPUT_FILE, user.name - def_authorities = DEFAULT_AUTHORITIES + ";" + email[0:email.index('@')].upper() - # we only got here if user was inserted via MSK AD - in which case name is formatted as: - # Gross, Benjamin E./Sloan Kettering Institute - if "/" in user.name: - user_name_parts = user.name.split("/") - row = { TIMESTAMP_KEY : current_time, MSKCC_EMAIL_KEY : user.inst_email, FULLNAME_KEY : user_name_parts[0], LAB_PI_KEY : user_name_parts[1], STATUS_KEY : STATUS_APPROVED, AUTHORITIES_KEY : def_authorities } - else: - row = { TIMESTAMP_KEY : current_time, MSKCC_EMAIL_KEY : user.inst_email, FULLNAME_KEY : user.name, STATUS_KEY : STATUS_APPROVED, AUTHORITIES_KEY : def_authorities } - add_row_to_google_worksheet(client, spreadsheet, worksheet, row) - - -# ------------------------------------------------------------------------------ -# adds a row to the google spreadsheet -def add_row_to_google_worksheet(client, spreadsheet, worksheet, row): - ss_id = get_feed_id(client.GetSpreadsheetsFeed(), spreadsheet) - ws_id = get_feed_id(client.GetWorksheetsFeed(ss_id), worksheet) - client.InsertRow(row, ss_id, ws_id); - -# ------------------------------------------------------------------------------ -# gets email parameters from google spreadsheet - -def get_email_parameters(google_spreadsheet,client): - subject = '' - body = '' - print >> OUTPUT_FILE, 'Getting email parameters from google spreadsheet' - email_worksheet_feed = get_worksheet_feed(client, google_spreadsheet, IMPORTER_WORKSHEET) - for entry in email_worksheet_feed.entry: - if entry.custom[SUBJECT_KEY].text is not None and entry.custom[BODY_KEY].text is not None: - subject = entry.custom[SUBJECT_KEY].text.strip() - body = entry.custom[BODY_KEY].text.strip() - return subject, body - -def get_portal_name_map(google_spreadsheet,client): - portal_name = {} - print >> OUTPUT_FILE, 'Getting access control parameter from google spreadsheet' - access_control_worksheet_feed = get_worksheet_feed(client,google_spreadsheet,ACCESS_CONTROL_WORKSHEET) - for entry in access_control_worksheet_feed.entry: - if entry.custom[PORTAL_NAME_KEY] is not None and entry.custom[SPREADSHEET_NAME_KEY] is not None: - portal_name[entry.custom[SPREADSHEET_NAME_KEY].text.strip()] = entry.custom[PORTAL_NAME_KEY].text.strip() - if entry.custom[PORTAL_NAME_KEY].text.strip() == 'mskcc-portal': - mskcc_user_spreadsheet = entry.custom[SPREADSHEET_NAME_KEY].text.strip() - - return portal_name,mskcc_user_spreadsheet - - -# ------------------------------------------------------------------------------ -# displays program usage (invalid args) - -def usage(): - print >> OUTPUT_FILE, 'importUsers.py --secrets-file [google secrets.json] --creds-file [oauth creds filename] --properties-file [properties file] --send-email-confirm [true or false] --use-institutional-id [true or false]' - -# ------------------------------------------------------------------------------ -# the big deal main. - -def main(): - - # parse command line options - try: - opts, args = getopt.getopt(sys.argv[1:], '', ['secrets-file=', 'creds-file=', 'properties-file=', 'send-email-confirm=', 'use-institutional-id=']) - except getopt.error, msg: - print >> ERROR_FILE, msg - usage() - sys.exit(2) - - # process the options - secrets_filename = '' - creds_filename = '' - properties_filename = '' - send_email_confirm = '' - - for o, a in opts: - if o == '--secrets-file': - secrets_filename = a - elif o == '--creds-file': - creds_filename = a - elif o == '--properties-file': - properties_filename = a - elif o == '--send-email-confirm': - send_email_confirm = a - - if (secrets_filename == '' or creds_filename == '' or properties_filename == '' or send_email_confirm == '' or - (send_email_confirm != 'true' and send_email_confirm != 'false')): - usage() - sys.exit(2) - - # check existence of file - if not os.path.exists(properties_filename): - print >> ERROR_FILE, 'properties file cannot be found: ' + properties_filename - sys.exit(2) - - # parse/get relevant portal properties - print >> OUTPUT_FILE, 'Reading portal properties file: ' + properties_filename - portal_properties = get_portal_properties(properties_filename) - if not portal_properties: - print >> OUTPUT_FILE, 'Error reading %s, exiting' % properties_filename - return - - # get db connection & create cursor - print >> OUTPUT_FILE, 'Connecting to database: ' + portal_properties.cgds_database_name - connection = get_db_connection(portal_properties) - if connection is not None: - cursor = connection.cursor() - else: - print >> OUTPUT_FILE, 'Error connecting to database, exiting' - return - - # login to google and get spreadsheet feed - client = google_login(secrets_filename, creds_filename, portal_properties.google_id, portal_properties.google_pw, sys.argv[0]) - - portal_name_map,mskcc_user_spreadsheet = get_portal_name_map(portal_properties.google_importer_spreadsheet,client) - - google_spreadsheets = portal_properties.google_spreadsheet.split(';') - - for google_spreadsheet in google_spreadsheets: - if not google_spreadsheet == '': - print >> OUTPUT_FILE, 'Importing ' + google_spreadsheet + ' ...' - - worksheet_feed = get_worksheet_feed(client, google_spreadsheet, - portal_properties.google_worksheet) - - # the 'guts' of the script - new_user_map = manage_users(google_spreadsheet, cursor, worksheet_feed, portal_name_map[google_spreadsheet], mskcc_user_spreadsheet) - - # update user authorities - update_user_authorities(google_spreadsheet, cursor, worksheet_feed, portal_name_map[google_spreadsheet], mskcc_user_spreadsheet) - - # sending emails - if new_user_map is not None: - if send_email_confirm == 'true': - subject,body = get_email_parameters(google_spreadsheet,client) - for new_user_key in new_user_map.keys(): - new_user = new_user_map[new_user_key] - print >> OUTPUT_FILE, ('Sending confirmation email to new user: %s at %s' % - (new_user.name, new_user.inst_email)) - send_mail([new_user.inst_email],subject,body) - - if google_spreadsheet == mskcc_user_spreadsheet: - add_unknown_users_to_spreadsheet(client, cursor, google_spreadsheet, portal_properties.google_worksheet,mskcc_user_spreadsheet) - - # clean up - cursor.close() - connection.commit() - connection.close() - - -# ------------------------------------------------------------------------------ -# ready to roll - -if __name__ == '__main__': - main() diff --git a/core/src/main/scripts/importer/allowed_data_types.txt b/core/src/main/scripts/importer/allowed_data_types.txt deleted file mode 100644 index 671bc447380..00000000000 --- a/core/src/main/scripts/importer/allowed_data_types.txt +++ /dev/null @@ -1,70 +0,0 @@ -# Users, admins: DO NOT CHANGE THIS FILE! -# These are the combinations of GENETIC_ALTERATION_TYPE, DATATYPE and STABLE_ID that will -# be allowed by the validator. Changing this file is not recommended by end users as parts of the -# cBioPortal code currently depend on some of these stable IDs to be exactly as they are specified -# here. The validator will check if the users used the right combinations and can also warn them -# when specific important combinations were found to be missing in their study directory. -GENETIC_ALTERATION_TYPE DATATYPE STABLE_ID -COPY_NUMBER_ALTERATION DISCRETE cna -COPY_NUMBER_ALTERATION DISCRETE_LONG cna -COPY_NUMBER_ALTERATION DISCRETE cna_rae -COPY_NUMBER_ALTERATION DISCRETE cna_consensus -COPY_NUMBER_ALTERATION DISCRETE gistic -COPY_NUMBER_ALTERATION DISCRETE_LONG gistic -COPY_NUMBER_ALTERATION CONTINUOUS linear_CNA -COPY_NUMBER_ALTERATION LOG2-VALUE log2CNA -MUTATION_EXTENDED MAF mutations -MUTATION_UNCALLED MAF mutations_uncalled -MRNA_EXPRESSION CONTINUOUS mrna_U133 -MRNA_EXPRESSION Z-SCORE mrna_U133_Zscores -MRNA_EXPRESSION Z-SCORE rna_seq_mrna_median_Zscores -MRNA_EXPRESSION Z-SCORE mrna_median_Zscores -MRNA_EXPRESSION CONTINUOUS rna_seq_mrna -MRNA_EXPRESSION CONTINUOUS rna_seq_v2_mrna -MRNA_EXPRESSION Z-SCORE rna_seq_v2_mrna_median_Zscores -MRNA_EXPRESSION CONTINUOUS rna_seq_v2_mrna_median_normals -MRNA_EXPRESSION Z-SCORE rna_seq_v2_mrna_median_normals_Zscores -MRNA_EXPRESSION CONTINUOUS mirna -MRNA_EXPRESSION Z-SCORE mirna_median_Zscores -MRNA_EXPRESSION Z-SCORE mrna_merged_median_Zscores -MRNA_EXPRESSION CONTINUOUS mrna -MRNA_EXPRESSION DISCRETE mrna_outliers -MRNA_EXPRESSION Z-SCORE mrna_zbynorm -MRNA_EXPRESSION CONTINUOUS rna_seq_mrna_capture -MRNA_EXPRESSION CONTINUOUS mrna_seq_cpm -MRNA_EXPRESSION CONTINUOUS mrna_seq_tpm -MRNA_EXPRESSION Z-SCORE mrna_seq_tpm_Zscores -MRNA_EXPRESSION Z-SCORE mrna_seq_cpm_Zscores -MRNA_EXPRESSION Z-SCORE rna_seq_mrna_capture_Zscores -MRNA_EXPRESSION CONTINUOUS mrna_seq_fpkm_capture -MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_capture_Zscores -MRNA_EXPRESSION CONTINUOUS mrna_seq_fpkm_polya -MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_polya_Zscores -MRNA_EXPRESSION Z-SCORE mrna_U133_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE mrna_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE rna_seq_mrna_median_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE mrna_median_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE rna_seq_v2_mrna_median_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE rna_seq_v2_mrna_median_all_sample_ref_normal_Zscores -MRNA_EXPRESSION Z-SCORE mrna_seq_cpm_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE mrna_seq_tpm_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE rna_seq_mrna_capture_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_capture_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_polya_all_sample_Zscores -MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_Zscores -MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_all_sample_Zscores -METHYLATION CONTINUOUS methylation_hm27 -METHYLATION CONTINUOUS methylation_hm450 -METHYLATION CONTINUOUS methylation_epic -METHYLATION CONTINUOUS methylation_promoters_rrbs -PROTEIN_LEVEL LOG2-VALUE rppa -PROTEIN_LEVEL Z-SCORE rppa_Zscores -PROTEIN_LEVEL CONTINUOUS protein_quantification -PROTEIN_LEVEL LOG2-VALUE protein_quantification -PROTEIN_LEVEL Z-SCORE protein_quantification_zscores -GENESET_SCORE GSVA-SCORE gsva_scores -GENESET_SCORE P-VALUE gsva_pvalues -GENERIC_ASSAY LIMIT-VALUE * -GENERIC_ASSAY BINARY * -GENERIC_ASSAY CATEGORICAL * -STRUCTURAL_VARIANT SV structural_variants diff --git a/core/src/main/scripts/importer/cbioportalImporter.py b/core/src/main/scripts/importer/cbioportalImporter.py deleted file mode 100755 index 2e0d812a191..00000000000 --- a/core/src/main/scripts/importer/cbioportalImporter.py +++ /dev/null @@ -1,553 +0,0 @@ -#!/usr/bin/env python3 - -# ------------------------------------------------------------------------------ -# Script which imports portal data. -# -# ------------------------------------------------------------------------------ - -import os -import sys -import importlib -import argparse -import logging -import re -from pathlib import Path - -# configure relative imports if running as a script; see PEP 366 -# it might passed as empty string by certain tooling to mark a top level module -if __name__ == "__main__" and (__package__ is None or __package__ == ''): - # replace the script's location in the Python search path by the main - # scripts/ folder, above it, so that the importer package folder is in - # scope and *not* directly in sys.path; see PEP 395 - sys.path[0] = str(Path(sys.path[0]).resolve().parent) - __package__ = 'importer' - # explicitly load the package, which is needed on CPython 3.4 because it - # doesn't include https://github.com/python/cpython/pull/2639 - importlib.import_module(__package__) - -from . import cbioportal_common -from .cbioportal_common import OUTPUT_FILE -from .cbioportal_common import ERROR_FILE -from .cbioportal_common import MetaFileTypes -from .cbioportal_common import IMPORTER_CLASSNAME_BY_META_TYPE -from .cbioportal_common import IMPORTER_REQUIRES_METADATA -from .cbioportal_common import IMPORT_CANCER_TYPE_CLASS -from .cbioportal_common import IMPORT_STUDY_CLASS -from .cbioportal_common import UPDATE_STUDY_STATUS_CLASS -from .cbioportal_common import REMOVE_STUDY_CLASS -from .cbioportal_common import IMPORT_CASE_LIST_CLASS -from .cbioportal_common import ADD_CASE_LIST_CLASS -from .cbioportal_common import VERSION_UTIL_CLASS -from .cbioportal_common import run_java - - -# ------------------------------------------------------------------------------ -# globals - -LOGGER = None - -# commands -IMPORT_CANCER_TYPE = "import-cancer-type" -IMPORT_STUDY = "import-study" -REMOVE_STUDY = "remove-study" -IMPORT_STUDY_DATA = "import-study-data" -IMPORT_CASE_LIST = "import-case-list" - -COMMANDS = [IMPORT_CANCER_TYPE, IMPORT_STUDY, REMOVE_STUDY, IMPORT_STUDY_DATA, IMPORT_CASE_LIST] - -# ------------------------------------------------------------------------------ -# sub-routines - -def import_cancer_type(jvm_args, data_filename): - args = jvm_args.split(' ') - args.append(IMPORT_CANCER_TYPE_CLASS) - args.append(data_filename) - args.append("false") # don't clobber existing table - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - -def import_study(jvm_args, meta_filename): - args = jvm_args.split(' ') - args.append(IMPORT_STUDY_CLASS) - args.append(meta_filename) - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - -def update_study_status(jvm_args, study_id): - args = jvm_args.split(' ') - args.append(UPDATE_STUDY_STATUS_CLASS) - args.append(study_id) - args.append("AVAILABLE") - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - -def remove_study_meta(jvm_args, meta_filename): - args = jvm_args.split(' ') - args.append(REMOVE_STUDY_CLASS) - meta_dictionary = cbioportal_common.parse_metadata_file( - meta_filename, logger=LOGGER) - if meta_dictionary['meta_file_type'] != MetaFileTypes.STUDY: - # invalid file, skip - print('Not a study meta file: ' + meta_filename, file=ERROR_FILE) - return - args.append(meta_dictionary['cancer_study_identifier']) - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - -def remove_study_id(jvm_args, study_id): - args = jvm_args.split(' ') - args.append(REMOVE_STUDY_CLASS) - args.append(study_id) - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - - -def import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity = None, meta_file_dictionary = None): - args = jvm_args.split(' ') - - # In case the meta file is already parsed in a previous function, it is not - # necessary to parse it again - if meta_file_dictionary is None: - meta_file_dictionary = cbioportal_common.parse_metadata_file( - meta_filename, logger=LOGGER) - - # Retrieve meta file type - meta_file_type = meta_file_dictionary['meta_file_type'] - - # Do not update entities by default - shouldUpdateGenericAssayEntities = False - if update_generic_assay_entity != None and update_generic_assay_entity.casefold() == "True".casefold(): - shouldUpdateGenericAssayEntities = True - - # invalid file, skip - if meta_file_type is None: - print(("Unrecognized meta file type '%s', skipping file" - % (meta_file_type)), file=ERROR_FILE) - return - - if not data_filename.endswith(meta_file_dictionary['data_filename']): - print(("'data_filename' in meta file contradicts " - "data filename in command, skipping file"), file=ERROR_FILE) - return - - importer = IMPORTER_CLASSNAME_BY_META_TYPE[meta_file_type] - - args.append(importer) - if IMPORTER_REQUIRES_METADATA[importer]: - args.append("--meta") - args.append(meta_filename) - args.append("--loadMode") - args.append("bulkload") - if importer == "org.mskcc.cbio.portal.scripts.ImportProfileData" and shouldUpdateGenericAssayEntities: - args.append("--update-info") - args.append("True") - elif importer == "org.mskcc.cbio.portal.scripts.ImportProfileData" and not shouldUpdateGenericAssayEntities: - args.append("--update-info") - args.append("False") - if importer in ("org.mskcc.cbio.portal.scripts.ImportMutSigData", "org.mskcc.cbio.portal.scripts.ImportGisticData"): - args.append("--data") - args.append(data_filename) - args.append("--study") - args.append(meta_file_dictionary['cancer_study_identifier']) - elif importer == "org.mskcc.cbio.portal.scripts.ImportGenePanelProfileMap": - args.append("--meta") - args.append(meta_filename) - args.append("--data") - args.append(data_filename) - else: - args.append("--data") - args.append(data_filename) - - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - -def import_case_list(jvm_args, meta_filename): - args = jvm_args.split(' ') - args.append(IMPORT_CASE_LIST_CLASS) - args.append(meta_filename) - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - -def add_global_case_list(jvm_args, study_id): - args = jvm_args.split(' ') - args.append(ADD_CASE_LIST_CLASS) - args.append(study_id) - args.append("all") - args.append("--noprogress") # don't report memory usage and % progress - run_java(*args) - -def check_version(jvm_args): - args = jvm_args.split(' ') - args.append(VERSION_UTIL_CLASS) - try: - run_java(*args) - except: - print( - 'Error, probably due to this version of the portal ' - 'being out of sync with the database. ' - 'Run the database migration script located at ' - 'CBIOPORTAL_SRC/core/src/main/scripts/migrate_db.py ' - 'before continuing.', - file=OUTPUT_FILE) - raise - -def process_case_lists(jvm_args, case_list_dir): - for case_list in os.listdir(case_list_dir): - # skip "temp"/backup files made by some text editors: - if not (case_list.startswith('.') or case_list.endswith('~')): - import_case_list(jvm_args, os.path.join(case_list_dir, case_list)) - -def process_command(jvm_args, command, meta_filename, data_filename, study_ids, update_generic_assay_entity = None): - if command == IMPORT_CANCER_TYPE: - import_cancer_type(jvm_args, data_filename) - elif command == IMPORT_STUDY: - import_study(jvm_args, meta_filename) - elif command == REMOVE_STUDY: - if study_ids == None: - remove_study_meta(jvm_args, meta_filename) - elif meta_filename == None: - study_ids = study_ids.split(",") - for study_id in study_ids: - remove_study_id(jvm_args, study_id) - else: - raise RuntimeError('Your command uses both -id and -meta. Please, use only one of the two parameters.') - elif command == IMPORT_STUDY_DATA: - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity) - elif command == IMPORT_CASE_LIST: - import_case_list(jvm_args, meta_filename) - -def process_directory(jvm_args, study_directory, update_generic_assay_entity = None): - """ - Import an entire study directory based on meta files found. - - 1. Determine meta files in study directory. - 2. Read all meta files and determine file types. - 3. Import data files in specific order by file type. - """ - - study_id = None - study_meta_filename = None - study_meta_dictionary = {} - cancer_type_filepairs = [] - sample_attr_filepair = None - sample_resource_filepair = None - resource_definition_filepair = None - regular_filepairs = [] - gene_panel_matrix_filepair = None - zscore_filepairs = [] - gsva_score_filepair = None - gsva_pvalue_filepair = None - structural_variant_filepair = None - cna_long_filepair = None - - # Determine meta filenames in study directory - meta_filenames = ( - os.path.join(study_directory, meta_filename) for - meta_filename in os.listdir(study_directory) if - re.search(r'(\b|_)meta(\b|[_0-9])', meta_filename, - flags=re.IGNORECASE) and - not (meta_filename.startswith('.') or meta_filename.endswith('~'))) - - # Read all meta files (excluding case lists) to determine what to import - for meta_filename in meta_filenames: - - # Parse meta file - meta_dictionary = cbioportal_common.parse_metadata_file( - meta_filename, study_id=study_id, logger=LOGGER) - - # Save meta dictionary in study meta dictionary - study_meta_dictionary[meta_filename] = meta_dictionary - - # Retrieve meta file type - meta_file_type = meta_dictionary['meta_file_type'] - if meta_file_type is None: - # invalid meta file, let's die - raise RuntimeError('Invalid meta file: ' + meta_filename) - - # remember study id to give an error in case any other file is referencing a different one - if study_id is None and 'cancer_study_identifier' in meta_dictionary: - study_id = meta_dictionary['cancer_study_identifier'] - - # Check the type of metafile. It is to know which metafile types the - # study contains because at a later stage we want to import in a - # specific order. - - # Check for cancer type file - if meta_file_type == MetaFileTypes.CANCER_TYPE: - cancer_type_filepairs.append( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - # Check for meta study file - elif meta_file_type == MetaFileTypes.STUDY: - if study_meta_filename is not None: - raise RuntimeError( - 'Multiple meta_study files found: {} and {}'.format( - study_meta_filename, meta_filename)) - # Determine the study meta filename - study_meta_filename = meta_filename - study_meta_dictionary[study_meta_filename] = meta_dictionary - # Check for resource definitions - elif meta_file_type == MetaFileTypes.RESOURCES_DEFINITION: - if resource_definition_filepair is not None: - raise RuntimeError( - 'Multiple resource definition files found: {} and {}'.format( - resource_definition_filepair[0], meta_filename)) # pylint: disable=unsubscriptable-object - resource_definition_filepair = ( - meta_filename, os.path.join(study_directory, meta_dictionary['data_filename'])) - # Check for sample attributes - elif meta_file_type == MetaFileTypes.SAMPLE_ATTRIBUTES: - if sample_attr_filepair is not None: - raise RuntimeError( - 'Multiple sample attribute files found: {} and {}'.format( - sample_attr_filepair[0], meta_filename)) # pylint: disable=unsubscriptable-object - sample_attr_filepair = ( - meta_filename, os.path.join(study_directory, meta_dictionary['data_filename'])) - elif meta_file_type == MetaFileTypes.SAMPLE_RESOURCES: - if sample_resource_filepair is not None: - raise RuntimeError( - 'Multiple sample resource files found: {} and {}'.format( - sample_resource_filepair[0], meta_filename)) # pylint: disable=unsubscriptable-object - sample_resource_filepair = ( - meta_filename, os.path.join(study_directory, meta_dictionary['data_filename'])) - # Check for gene panel matrix - elif meta_file_type == MetaFileTypes.GENE_PANEL_MATRIX: - gene_panel_matrix_filepair = ( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - # Check for z-score exression files - elif meta_file_type == MetaFileTypes.EXPRESSION and meta_dictionary['datatype'] == "Z-SCORE": - zscore_filepairs.append( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - # Check for GSVA scores - elif meta_file_type == MetaFileTypes.GSVA_SCORES: - gsva_score_filepair = ( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - # Check for GSVA p-values - elif meta_file_type == MetaFileTypes.GSVA_PVALUES: - gsva_pvalue_filepair = ( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - # Check for structural variant data - elif meta_file_type == MetaFileTypes.STRUCTURAL_VARIANT: - structural_variant_filepair = ( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - elif meta_file_type == MetaFileTypes.CNA_DISCRETE_LONG: - cna_long_filepair = ( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - # Add all other types of data - else: - regular_filepairs.append( - (meta_filename, os.path.join(study_directory, meta_dictionary['data_filename']))) - - # First, import cancer types - for meta_filename, data_filename in cancer_type_filepairs: - import_cancer_type(jvm_args, data_filename) - - # Then define the study - if study_meta_filename is None: - raise RuntimeError('No meta_study file found') - else: - # First remove study if exists - remove_study_meta(jvm_args, study_meta_filename) - import_study(jvm_args, study_meta_filename) - - # Next, we need to import sample definitions - if sample_attr_filepair is None: - raise RuntimeError('No sample attribute file found') - else: - meta_filename, data_filename = sample_attr_filepair - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Next, we need to import resource definitions for resource data - if resource_definition_filepair is not None: - meta_filename, data_filename = resource_definition_filepair - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Next, we need to import sample definitions for resource data - if sample_resource_filepair is not None: - meta_filename, data_filename = sample_resource_filepair - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Next, import everything else except gene panel, structural variant data, GSVA and - # z-score expression. If in the future more types refer to each other, (like - # in a tree structure) this could be programmed in a recursive fashion. - for meta_filename, data_filename in regular_filepairs: - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Import structural variant data - if structural_variant_filepair is not None: - meta_filename, data_filename = structural_variant_filepair - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Import cna data - if cna_long_filepair is not None: - meta_filename, data_filename = cna_long_filepair - import_study_data(jvm_args=jvm_args, meta_filename=meta_filename, data_filename=data_filename, - meta_file_dictionary=study_meta_dictionary[meta_filename]) - - # Import expression z-score (after expression) - for meta_filename, data_filename in zscore_filepairs: - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Import GSVA genetic profiles (after expression and z-scores) - if gsva_score_filepair is not None: - - # First import the GSVA score data - meta_filename, data_filename = gsva_score_filepair - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Second import the GSVA p-value data - meta_filename, data_filename = gsva_pvalue_filepair - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - if gene_panel_matrix_filepair is not None: - meta_filename, data_filename = gene_panel_matrix_filepair - import_study_data(jvm_args, meta_filename, data_filename, update_generic_assay_entity, study_meta_dictionary[meta_filename]) - - # Import the case lists - case_list_dirname = os.path.join(study_directory, 'case_lists') - if os.path.isdir(case_list_dirname): - process_case_lists(jvm_args, case_list_dirname) - - if study_meta_dictionary[study_meta_filename].get('add_global_case_list', 'false').lower() == 'true': - add_global_case_list(jvm_args, study_id) - - # enable study - update_study_status(jvm_args, study_id) - - -def usage(): - # TODO : replace this by usage string from interface() - print(('cbioportalImporter.py --jar-path (path to scripts jar file) ' + - '--command [%s] --study_directory ' - '--meta_filename ' - '--data_filename ' - '--study_ids ' % (COMMANDS)), file=OUTPUT_FILE) - -def check_args(command): - if command not in COMMANDS: - usage() - sys.exit(2) - - -def check_files(meta_filename, data_filename): - if meta_filename and not os.path.exists(meta_filename): - print('meta-file cannot be found: ' + meta_filename, file=ERROR_FILE) - sys.exit(2) - if data_filename and not os.path.exists(data_filename): - print('data-file cannot be found:' + data_filename, file=ERROR_FILE) - sys.exit(2) - -def check_dir(study_directory): - # check existence of directory - if not os.path.exists(study_directory) and study_directory != '': - print('Study cannot be found: ' + study_directory, file=ERROR_FILE) - sys.exit(2) - -def add_parser_args(parser): - parser.add_argument('-s', '--study_directory', type=str, required=False, - help='Path to Study Directory') - parser.add_argument('-jar', '--jar_path', type=str, required=False, - help='Path to scripts JAR file') - parser.add_argument('-meta', '--meta_filename', type=str, required=False, - help='Path to meta file') - parser.add_argument('-data', '--data_filename', type=str, required=False, - help='Path to Data file') - -def interface(): - parent_parser = argparse.ArgumentParser(description='cBioPortal meta Importer') - add_parser_args(parent_parser) - parser = argparse.ArgumentParser() - subparsers = parser.add_subparsers(title='subcommands', dest='subcommand', - help='Command for import. Allowed commands: import-cancer-type, ' - 'import-study, import-study-data, import-case-list or ' - 'remove-study') - import_cancer_type = subparsers.add_parser('import-cancer-type', parents=[parent_parser], add_help=False) - import_study = subparsers.add_parser('import-study', parents=[parent_parser], add_help=False) - import_study_data = subparsers.add_parser('import-study-data', parents=[parent_parser], add_help=False) - import_case_list = subparsers.add_parser('import-case-list', parents=[parent_parser], add_help=False) - remove_study = subparsers.add_parser('remove-study', parents=[parent_parser], add_help=False) - - remove_study.add_argument('-id', '--study_ids', type=str, required=False, - help='Cancer Study IDs for `remove-study` command, comma separated') - parser.add_argument('-c', '--command', type=str, required=False, - help='This argument is outdated. Please use the listed subcommands, without the -c flag. ' - 'Command for import. Allowed commands: import-cancer-type, ' - 'import-study, import-study-data, import-case-list or ' - 'remove-study') - add_parser_args(parser) - parser.add_argument('-id', '--study_ids', type=str, required=False, - help='Cancer Study IDs for `remove-study` command, comma separated') - - parser.add_argument('-update', '--update_generic_assay_entity', type=str, required=False, - help='Set as True to update the existing generic assay entities, set as False to keep the existing generic assay entities for generic assay') - # TODO - add same argument to metaimporter - # TODO - harmonize on - and _ - - parser = parser.parse_args() - if parser.command is not None and parser.subcommand is not None: - print('Cannot call multiple commands') - sys.exit(2) - elif parser.subcommand is not None: - parser.command = parser.subcommand - return parser - - -def locate_jar(): - """Locate the scripts jar file relative to this script. - - Throws a FileNotFoundError with a message if the jar file couldn't be - identified. - """ - # get the directory name of the currently running script, - # resolving any symlinks - script_dir = Path(__file__).resolve().parent - # go up from cbioportal/core/src/main/scripts/importer/ to cbioportal/ - src_root = script_dir.parent.parent.parent.parent.parent - jars = list((src_root / 'scripts' / 'target').glob('scripts-*.jar')) - if len(jars) != 1: - raise FileNotFoundError( - 'Expected to find 1 scripts-*.jar, but found ' + str(len(jars))) - return str(jars[0]) - - -def main(args): - global LOGGER - - # get the logger with a handler to print logged error messages to stderr - module_logger = logging.getLogger(__name__) - error_handler = logging.StreamHandler(sys.stderr) - error_handler.setFormatter(cbioportal_common.LogfileStyleFormatter( - os.getcwd())) - error_handler.setLevel(logging.ERROR) - module_logger.addHandler(error_handler) - LOGGER = module_logger - - # jar_path is optional. If not set, try to find it relative to this script - if args.jar_path is None: - try: - args.jar_path = locate_jar() - except FileNotFoundError as e: - print(e) - sys.exit(2) - print('Data loading step using', args.jar_path) - print() - - # process the options - jvm_args = "-Dspring.profiles.active=dbcp -cp " + args.jar_path - study_directory = args.study_directory - - # check if DB version and application version are in sync - check_version(jvm_args) - - if study_directory != None: - check_dir(study_directory) - process_directory(jvm_args, study_directory, args.update_generic_assay_entity) - else: - check_args(args.command) - check_files(args.meta_filename, args.data_filename) - process_command(jvm_args, args.command, args.meta_filename, args.data_filename, args.study_ids, args.update_generic_assay_entity) - -# ------------------------------------------------------------------------------ -# ready to roll - -if __name__ == '__main__': - parsed_args = interface() - main(parsed_args) diff --git a/core/src/main/scripts/importer/cbioportal_common.py b/core/src/main/scripts/importer/cbioportal_common.py deleted file mode 100644 index b3a97279cdb..00000000000 --- a/core/src/main/scripts/importer/cbioportal_common.py +++ /dev/null @@ -1,1113 +0,0 @@ -#!/usr/bin/env python3 - -# ------------------------------------------------------------------------------ -# Common components used by various cbioportal scripts. -# ------------------------------------------------------------------------------ - - -import os -import sys -import csv -import logging.handlers -from collections import OrderedDict -from subprocess import Popen, PIPE, STDOUT -from typing import Dict, Optional -import dsnparse -import MySQLdb - -# ------------------------------------------------------------------------------ -# globals - -ERROR_FILE = sys.stderr -OUTPUT_FILE = sys.stdout - -# global variables to check `source_stable_id` for `genomic_profile_link` -expression_stable_ids = {} -gsva_scores_stable_id = "" -expression_zscores_source_stable_ids = {} -gsva_scores_source_stable_id = "" -gsva_pvalues_source_stable_id = "" -expression_zscores_filename = "" -gsva_scores_filename = "" -gsva_pvalues_filename = "" - -IMPORT_STUDY_CLASS = "org.mskcc.cbio.portal.scripts.ImportCancerStudy" -UPDATE_STUDY_STATUS_CLASS = "org.mskcc.cbio.portal.scripts.UpdateCancerStudy" -REMOVE_STUDY_CLASS = "org.mskcc.cbio.portal.scripts.RemoveCancerStudy" -IMPORT_CANCER_TYPE_CLASS = "org.mskcc.cbio.portal.scripts.ImportTypesOfCancers" -IMPORT_CASE_LIST_CLASS = "org.mskcc.cbio.portal.scripts.ImportSampleList" -ADD_CASE_LIST_CLASS = "org.mskcc.cbio.portal.scripts.AddCaseList" -VERSION_UTIL_CLASS = "org.mskcc.cbio.portal.util.VersionUtil" - -PORTAL_PROPERTY_DATABASE_USER = 'db.user' -PORTAL_PROPERTY_DATABASE_PW = 'db.password' -PORTAL_PROPERTY_DATABASE_HOST = 'db.host' -PORTAL_PROPERTY_DATABASE_NAME = 'db.portal_db_name' -PORTAL_PROPERTY_DATABASE_URL = 'db.connection_string' -PORTAL_PROPERTY_DATABASE_USESSL = 'db.use_ssl' -REQUIRED_DATABASE_PROPERTIES = [PORTAL_PROPERTY_DATABASE_USER, PORTAL_PROPERTY_DATABASE_PW, PORTAL_PROPERTY_DATABASE_URL] - -# provides a key for data types to metafile specification dict. -class MetaFileTypes(object): - """how we differentiate between data types.""" - STUDY = 'meta_study' - CANCER_TYPE = 'meta_cancer_type' - SAMPLE_ATTRIBUTES = 'meta_clinical_sample' - PATIENT_ATTRIBUTES = 'meta_clinical_patient' - CNA_DISCRETE = 'meta_CNA' - CNA_DISCRETE_LONG = 'meta_CNA_long' - CNA_LOG2 = 'meta_log2CNA' - CNA_CONTINUOUS = 'meta_contCNA' - SEG = 'meta_segment' - EXPRESSION = 'meta_expression' - MUTATION = 'meta_mutations_extended' - MUTATION_UNCALLED = 'meta_mutations_uncalled' - METHYLATION = 'meta_methylation' - PROTEIN = 'meta_protein' - GISTIC_GENES = 'meta_gistic_genes' - TIMELINE = 'meta_timeline' - CASE_LIST = 'case_list' - MUTATION_SIGNIFICANCE = 'meta_mutsig' - GENE_PANEL_MATRIX = 'meta_gene_panel_matrix' - GSVA_SCORES = 'meta_gsva_scores' - GSVA_PVALUES = 'meta_gsva_pvalues' - GENERIC_ASSAY_CONTINUOUS = 'meta_generic_assay_continuous' - GENERIC_ASSAY_BINARY = 'meta_generic_assay_binary' - GENERIC_ASSAY_CATEGORICAL = 'meta_generic_assay_categorical' - STRUCTURAL_VARIANT = 'meta_structural_variants' - SAMPLE_RESOURCES = 'meta_resource_sample' - PATIENT_RESOURCES = 'meta_resource_patient' - STUDY_RESOURCES = 'meta_resource_study' - RESOURCES_DEFINITION = 'meta_resource_definition' - - -# fields allowed in each meta file type, maps to True if required -META_FIELD_MAP = { - MetaFileTypes.CANCER_TYPE: { - 'genetic_alteration_type': True, - 'datatype': True, - 'data_filename': True - }, - MetaFileTypes.STUDY: { - 'cancer_study_identifier': True, - 'type_of_cancer': True, - 'name': True, - 'description': True, - 'citation': False, - 'pmid': False, - 'groups': False, - 'add_global_case_list': False, - 'tags_file': False, - 'reference_genome': False - }, - MetaFileTypes.SAMPLE_ATTRIBUTES: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'data_filename': True - }, - MetaFileTypes.PATIENT_ATTRIBUTES: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'data_filename': True - }, - MetaFileTypes.CNA_DISCRETE: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False, - 'pd_annotations_filename': False - }, - MetaFileTypes.CNA_DISCRETE_LONG: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False, - 'namespaces': False - }, - MetaFileTypes.CNA_LOG2: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False - }, - MetaFileTypes.CNA_CONTINUOUS: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False - }, - MetaFileTypes.SEG: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'reference_genome_id': True, - 'data_filename': True, - 'description': True - }, - MetaFileTypes.MUTATION: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'normal_samples_list': False, - 'swissprot_identifier': False, - 'gene_panel': False, - 'variant_classification_filter': False, - 'namespaces': False - }, - MetaFileTypes.MUTATION_UNCALLED: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': False, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'normal_samples_list': False, - 'swissprot_identifier': False, - 'gene_panel': False, - 'variant_classification_filter': False, - 'namespaces': False - }, - MetaFileTypes.EXPRESSION: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'source_stable_id': False, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False - }, - MetaFileTypes.METHYLATION: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False - }, - MetaFileTypes.PROTEIN: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False - }, - MetaFileTypes.GISTIC_GENES: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'reference_genome_id': True, - 'data_filename': True - }, - MetaFileTypes.TIMELINE: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'data_filename': True - }, - MetaFileTypes.CASE_LIST: { - 'cancer_study_identifier': True, - 'stable_id': True, - 'case_list_name': True, - 'case_list_description': True, - 'case_list_ids': True, - 'case_list_category': False # TODO this is used in org.mskcc.cbio.portal.model.AnnotatedPatientSets.getDefaultPatientList(), decide whether to keeep, see #494 - }, - MetaFileTypes.MUTATION_SIGNIFICANCE: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'data_filename': True - }, - MetaFileTypes.GENE_PANEL_MATRIX: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'data_filename': True - }, - MetaFileTypes.GSVA_PVALUES: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'source_stable_id': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'geneset_def_version': True - }, - MetaFileTypes.GSVA_SCORES: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'source_stable_id': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'show_profile_in_analysis_tab': True, - 'geneset_def_version': True - }, - MetaFileTypes.GENERIC_ASSAY_CONTINUOUS: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'generic_assay_type': True, - 'datatype': True, - 'stable_id': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'show_profile_in_analysis_tab': True, - 'generic_entity_meta_properties': False, - 'pivot_threshold_value': False, - 'value_sort_order': False, - 'patient_level': False - }, - MetaFileTypes.GENERIC_ASSAY_BINARY: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'generic_assay_type': True, - 'datatype': True, - 'stable_id': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'show_profile_in_analysis_tab': True, - 'generic_entity_meta_properties': False, - 'patient_level': False - }, - MetaFileTypes.GENERIC_ASSAY_CATEGORICAL: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'generic_assay_type': True, - 'datatype': True, - 'stable_id': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'show_profile_in_analysis_tab': True, - 'generic_entity_meta_properties': False, - 'patient_level': False - }, - MetaFileTypes.STRUCTURAL_VARIANT: { - 'cancer_study_identifier': True, - 'genetic_alteration_type': True, - 'datatype': True, - 'stable_id': True, - 'show_profile_in_analysis_tab': True, - 'profile_name': True, - 'profile_description': True, - 'data_filename': True, - 'gene_panel': False, - 'namespaces': False - }, - MetaFileTypes.SAMPLE_RESOURCES: { - 'cancer_study_identifier': True, - 'resource_type': True, - 'data_filename': True - }, - MetaFileTypes.PATIENT_RESOURCES: { - 'cancer_study_identifier': True, - 'resource_type': True, - 'data_filename': True - }, - MetaFileTypes.STUDY_RESOURCES: { - 'cancer_study_identifier': True, - 'resource_type': True, - 'data_filename': True - }, - MetaFileTypes.RESOURCES_DEFINITION: { - 'cancer_study_identifier': True, - 'resource_type': True, - 'data_filename': True - }, -} - -IMPORTER_CLASSNAME_BY_META_TYPE = { - MetaFileTypes.STUDY: IMPORT_STUDY_CLASS, - MetaFileTypes.CANCER_TYPE: IMPORT_CANCER_TYPE_CLASS, - MetaFileTypes.SAMPLE_ATTRIBUTES: "org.mskcc.cbio.portal.scripts.ImportClinicalData", - MetaFileTypes.PATIENT_ATTRIBUTES: "org.mskcc.cbio.portal.scripts.ImportClinicalData", - MetaFileTypes.CNA_DISCRETE: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.CNA_DISCRETE_LONG: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.CNA_LOG2: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.CNA_CONTINUOUS: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.SEG: "org.mskcc.cbio.portal.scripts.ImportCopyNumberSegmentData", - MetaFileTypes.EXPRESSION: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.MUTATION: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.MUTATION_UNCALLED: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.METHYLATION: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.PROTEIN: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.GISTIC_GENES: "org.mskcc.cbio.portal.scripts.ImportGisticData", - MetaFileTypes.TIMELINE: "org.mskcc.cbio.portal.scripts.ImportTimelineData", - MetaFileTypes.CASE_LIST: IMPORT_CASE_LIST_CLASS, - MetaFileTypes.MUTATION_SIGNIFICANCE: "org.mskcc.cbio.portal.scripts.ImportMutSigData", - MetaFileTypes.GENE_PANEL_MATRIX: "org.mskcc.cbio.portal.scripts.ImportGenePanelProfileMap", - MetaFileTypes.GSVA_SCORES: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.GSVA_PVALUES: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.GENERIC_ASSAY_CONTINUOUS: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.GENERIC_ASSAY_BINARY: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.GENERIC_ASSAY_CATEGORICAL: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.STRUCTURAL_VARIANT: "org.mskcc.cbio.portal.scripts.ImportProfileData", - MetaFileTypes.SAMPLE_RESOURCES: "org.mskcc.cbio.portal.scripts.ImportResourceData", - MetaFileTypes.PATIENT_RESOURCES: "org.mskcc.cbio.portal.scripts.ImportResourceData", - MetaFileTypes.STUDY_RESOURCES: "org.mskcc.cbio.portal.scripts.ImportResourceData", - MetaFileTypes.RESOURCES_DEFINITION: "org.mskcc.cbio.portal.scripts.ImportResourceDefinition", -} - -IMPORTER_REQUIRES_METADATA = { - "org.mskcc.cbio.portal.scripts.ImportClinicalData" : True, - "org.mskcc.cbio.portal.scripts.ImportCopyNumberSegmentData" : True, - "org.mskcc.cbio.portal.scripts.ImportGisticData" : False, - "org.mskcc.cbio.portal.scripts.ImportMutSigData" : False, - "org.mskcc.cbio.portal.scripts.ImportProfileData" : True, - "org.mskcc.cbio.portal.scripts.ImportTimelineData" : True, - "org.mskcc.cbio.portal.scripts.ImportGenePanelProfileMap" : False, - "org.mskcc.cbio.portal.scripts.ImportResourceData" : True, - "org.mskcc.cbio.portal.scripts.ImportResourceDefinition" : True -} - -# ------------------------------------------------------------------------------ -# class definitions - -class ValidationMessageFormatter(logging.Formatter): - - """Logging formatter with optional fields for data validation messages. - - These fields are: - filename_ - the path to the file the message is about (if applicable) - line_number - a line number within the above file (if applicable) - column_number - a column number within the above file (if applicable) - cause - the unexpected value found in the input (if applicable) - - If instead a message pertains to multiple values of one of these - fields (as the result of aggregation by CollapsingLogMessageHandler), - these will be expected in the field _list. - """ - - def format(self, record, *args, **kwargs): - """Check consistency of expected fields and format the record.""" - if ( - ( - hasattr(record, 'line_number') or - hasattr(record, 'line_number_list') or - hasattr(record, 'column_number') or - hasattr(record, 'column_number_list')) - and not hasattr(record, 'filename_')): - raise ValueError( - 'Tried to log about a line/column with no filename') - return super(ValidationMessageFormatter, self).format(record, - *args, - **kwargs) - - @staticmethod - def format_aggregated(record, - field_name, - single_fmt='%s', - multiple_fmt='[%s]', - join_string=', ', - max_join=3, - optional=False): - """Format a human-readable string for a field or its _list. - - From log records as generated by the flush() method of - CollapsingLogMessageHandler. If the field was not aggregated, format - it according to the format string `single_fmt`. If it was, coerce the - first `max_join` values to strings, concatenate them separated by - `join_string`, and format the result according to `multiple_fmt`. - - If `max_join` is None, join all values and apply no maximum length. - - If `optional` is True and both the field and its list are absent, - return an empty string. - """ - attr_val = getattr(record, field_name, None) - attr_list = getattr(record, field_name + '_list', None) - if attr_val is not None: - attr_indicator = single_fmt % attr_val - elif attr_list is not None: - # treat None as 'format all of them, no maximum' - if max_join is None: - max_join = len(attr_list) - string_list = list(str(val) for val in attr_list[:max_join]) - num_skipped = len(attr_list) - len(string_list) - if num_skipped != 0: - string_list.append('(%d more)' % num_skipped) - attr_indicator = multiple_fmt % join_string.join(string_list) - elif optional: - attr_indicator = '' - else: - raise ValueError( - "Tried to format an absent non-optional log field: '%s'" % - field_name) - return attr_indicator - - -class LogfileStyleFormatter(ValidationMessageFormatter): - - """Formatter for validation messages in a simple one-per-line format.""" - - def __init__(self, study_dir): - """Initialize a logging Formatter with an appropriate format string.""" - super(LogfileStyleFormatter, self).__init__( - fmt='%(levelname)s: %(file_indicator)s:' - '%(line_indicator)s%(column_indicator)s' - ' %(message)s%(cause_indicator)s') - self.study_dir = study_dir - self.previous_filename = None - - def format(self, record): - - """Generate descriptions for optional fields and format the record.""" - - - if not hasattr(record, 'filename_'): - record.file_indicator = '-' - else: - record.file_indicator = os.path.relpath(record.filename_.strip(), - self.study_dir) - record.line_indicator = self.format_aggregated( - record, - 'line_number', - ' line %d:', - ' lines [%s]:', - optional=True) - record.column_indicator = self.format_aggregated( - record, - 'column_number', - ' column %d:', - ' columns [%s]:', - optional=True) - record.cause_indicator = self.format_aggregated( - record, - 'cause', - "; value encountered: '%s'", - "; values encountered: ['%s']", - join_string="', '", - optional=True) - - # format the string based on these fields - formatted_result = super(LogfileStyleFormatter, self).format(record) - - # prepend an empty line if the filename is different than before - current_filename = getattr(record, 'filename_', '') - if (self.previous_filename is not None and - current_filename != self.previous_filename): - formatted_result = '\n' + formatted_result - self.previous_filename = current_filename - - return formatted_result - - -class CollapsingLogMessageHandler(logging.handlers.MemoryHandler): - - """Logging handler that aggregates repeated log messages into one. - - This collapses validation LogRecords based on the source code line that - emitted them and their formatted message, and flushes the resulting - records to another handler. - """ - - # TODO make it collapse messages on emit, instead of keeping it all in RAM - def flush(self): - - """Aggregate LogRecords by message and send them to the target handler. - - Fields that occur with multiple different values in LogRecords - emitted from the same line with the same message (and optional - 'filename_' attribute) will be collected in a field named - _list. - """ - - # group buffered LogRecords by their source code line and message - grouping_dict = OrderedDict() - for record in self.buffer: - identifying_tuple = (record.module, - record.lineno, - getattr(record, 'filename_', None), - record.getMessage()) - if identifying_tuple not in grouping_dict: - grouping_dict[identifying_tuple] = [] - - # add a tuple that keeps the relation between the line number, - # the column number and the cause for the HTML report - record.__dict__['value'] = ( - getattr(record, 'line_number', None), - getattr(record, 'column_number', None), - getattr(record, 'cause', None)) - - grouping_dict[identifying_tuple].append(record) - - aggregated_buffer = [] - # for each list of same-message records - for record_list in list(grouping_dict.values()): - # make a dict to collect the fields for the aggregate record - aggregated_field_dict = {} - # for each field found in (the first of) the records - for field_name in record_list[0].__dict__: - # collect the values found for this field across the records. - # Use the keys of an OrderedDict, as OrderedSet is for some - # reason not to be found in the Python standard library. - field_values = OrderedDict((record.__dict__[field_name], None) - for record in record_list) - # if this field has the same value in all records - if len(field_values) == 1: - # use that value in the new dict - aggregated_field_dict[field_name] = field_values.popitem()[0] - else: - # set a _list field instead - aggregated_field_dict[field_name + '_list'] = \ - list(field_values.keys()) - - # add a new log record with these fields tot the output buffer - aggregated_buffer.append( - logging.makeLogRecord(aggregated_field_dict)) - - # replace the buffer with the aggregated one and flush - self.buffer = aggregated_buffer - super(CollapsingLogMessageHandler, self).flush() - - def shouldFlush(self, record): - """Collapse and flush every time a debug message is emitted.""" - return (record.levelno == logging.DEBUG or - super(CollapsingLogMessageHandler, self).shouldFlush(record)) - - -# ------------------------------------------------------------------------------ -# sub-routines - -def get_meta_file_type(meta_dictionary, logger, filename): - """ - Returns one of the metatypes found in MetaFileTypes - - NB: a subset of these types (combined with allowed_data_types.txt) - is also tracked in org.cbioportal.model.GeneticProfile.java. If you add - things here, please make sure to update there as well if it regards a - genetic profile data type. - """ - # The following dictionary is required to define the MetaFileType for all - # combinations, which are used in validateData to determine which validator - # should be used. There is some redundancy with allowed_data_types.txt, which - # also contains genetic alteration types and datatype combinations, but is used - # to check if the correct stable id is used. - # GENETIC_ALTERATION_TYPE DATATYPE meta - alt_type_datatype_to_meta = { - # cancer type - ("CANCER_TYPE", "CANCER_TYPE"): MetaFileTypes.CANCER_TYPE, - # clinical and timeline - ("CLINICAL", "PATIENT_ATTRIBUTES"): MetaFileTypes.PATIENT_ATTRIBUTES, - ("CLINICAL", "SAMPLE_ATTRIBUTES"): MetaFileTypes.SAMPLE_ATTRIBUTES, - ("CLINICAL", "TIMELINE"): MetaFileTypes.TIMELINE, - # rppa and mass spectrometry - ("PROTEIN_LEVEL", "LOG2-VALUE"): MetaFileTypes.PROTEIN, - ("PROTEIN_LEVEL", "Z-SCORE"): MetaFileTypes.PROTEIN, - ("PROTEIN_LEVEL", "CONTINUOUS"): MetaFileTypes.PROTEIN, - # cna - ("COPY_NUMBER_ALTERATION", "DISCRETE"): MetaFileTypes.CNA_DISCRETE, - ("COPY_NUMBER_ALTERATION", "DISCRETE_LONG"): MetaFileTypes.CNA_DISCRETE_LONG, - ("COPY_NUMBER_ALTERATION", "CONTINUOUS"): MetaFileTypes.CNA_CONTINUOUS, - ("COPY_NUMBER_ALTERATION", "LOG2-VALUE"): MetaFileTypes.CNA_LOG2, - ("COPY_NUMBER_ALTERATION", "SEG"): MetaFileTypes.SEG, - # expression - ("MRNA_EXPRESSION", "CONTINUOUS"): MetaFileTypes.EXPRESSION, - ("MRNA_EXPRESSION", "Z-SCORE"): MetaFileTypes.EXPRESSION, - ("MRNA_EXPRESSION", "DISCRETE"): MetaFileTypes.EXPRESSION, - # mutations - ("MUTATION_EXTENDED", "MAF"): MetaFileTypes.MUTATION, - ("MUTATION_UNCALLED", "MAF"): MetaFileTypes.MUTATION_UNCALLED, - # others - ("METHYLATION", "CONTINUOUS"): MetaFileTypes.METHYLATION, - ("GENE_PANEL_MATRIX", "GENE_PANEL_MATRIX"): MetaFileTypes.GENE_PANEL_MATRIX, - ("STRUCTURAL_VARIANT", "SV"): MetaFileTypes.STRUCTURAL_VARIANT, - # cross-sample molecular statistics (for gene selection) - ("GISTIC_GENES_AMP", "Q-VALUE"): MetaFileTypes.GISTIC_GENES, - ("GISTIC_GENES_DEL", "Q-VALUE"): MetaFileTypes.GISTIC_GENES, - ("MUTSIG", "Q-VALUE"): MetaFileTypes.MUTATION_SIGNIFICANCE, - ("GENESET_SCORE", "GSVA-SCORE"): MetaFileTypes.GSVA_SCORES, - ("GENESET_SCORE", "P-VALUE"): MetaFileTypes.GSVA_PVALUES, - ("GENERIC_ASSAY", "LIMIT-VALUE"): MetaFileTypes.GENERIC_ASSAY_CONTINUOUS, - ("GENERIC_ASSAY", "BINARY"): MetaFileTypes.GENERIC_ASSAY_BINARY, - ("GENERIC_ASSAY", "CATEGORICAL"): MetaFileTypes.GENERIC_ASSAY_CATEGORICAL - } - result = None - if 'genetic_alteration_type' in meta_dictionary and 'datatype' in meta_dictionary: - genetic_alteration_type = meta_dictionary['genetic_alteration_type'] - data_type = meta_dictionary['datatype'] - if (genetic_alteration_type, data_type) in alt_type_datatype_to_meta: - result = alt_type_datatype_to_meta[(genetic_alteration_type, data_type)] - else: - if meta_dictionary['datatype'] == 'FUSION': - logger.error( - 'The Fusion file format is deprecated. Consider adding the data in Structural Variant format.', - extra={'filename_': filename, - 'cause': ('genetic_alteration_type: %s, ' - 'datatype: %s' % ( - meta_dictionary['genetic_alteration_type'], - meta_dictionary['datatype']))}) - else: - logger.error( - 'Could not determine the file type. Please check your meta files for correct configuration.', - extra={'filename_': filename, - 'cause': ('genetic_alteration_type: %s, ' - 'datatype: %s' % ( - meta_dictionary['genetic_alteration_type'], - meta_dictionary['datatype']))}) - elif 'cancer_study_identifier' in meta_dictionary and 'type_of_cancer' in meta_dictionary: - result = MetaFileTypes.STUDY - elif 'type_of_cancer' in meta_dictionary: - result = MetaFileTypes.CANCER_TYPE - elif 'cancer_study_identifier' in meta_dictionary and 'resource_type' in meta_dictionary: - if meta_dictionary['resource_type'] == 'PATIENT': - result = MetaFileTypes.PATIENT_RESOURCES - elif meta_dictionary['resource_type'] == 'SAMPLE': - result = MetaFileTypes.SAMPLE_RESOURCES - elif meta_dictionary['resource_type'] == 'STUDY': - result = MetaFileTypes.STUDY_RESOURCES - elif meta_dictionary['resource_type'] == 'DEFINITION': - result = MetaFileTypes.RESOURCES_DEFINITION - else: - logger.error('Could not determine the file type. Did not find expected meta file fields. Please check your meta files for correct configuration.', - extra={'filename_': filename}) - return result - - -def validate_types_and_id(meta_dictionary, logger, filename): - """Validate a genetic_alteration_type, datatype (and stable_id in some cases) against the predefined - allowed combinations found in ./allowed_data_types.txt - """ - result = True - # this validation only applies to items that have genetic_alteration_type and datatype and stable_id - if 'genetic_alteration_type' in meta_dictionary and 'datatype' in meta_dictionary and 'stable_id' in meta_dictionary: - alt_type_datatype_and_stable_id = {} - script_dir = os.path.dirname(__file__) - allowed_data_types_file_name = os.path.join(script_dir, "allowed_data_types.txt") - data_line_nr = 0 - # build up map alt_type_datatype_and_stable_id: - with open(allowed_data_types_file_name) as allowed_data_types_file: - for line in allowed_data_types_file: - if line.startswith("#"): - continue - data_line_nr += 1 - # skip header, so if line is not header then process as tab separated: - if (data_line_nr > 1): - line_cols = next(csv.reader([line], delimiter='\t')) - genetic_alteration_type = line_cols[0] - data_type = line_cols[1] - # add to map: - if (genetic_alteration_type, data_type) not in alt_type_datatype_and_stable_id: - alt_type_datatype_and_stable_id[(genetic_alteration_type, data_type)] = [] - alt_type_datatype_and_stable_id[(genetic_alteration_type, data_type)].append(line_cols[2]) - # init: - stable_id = meta_dictionary['stable_id'] - genetic_alteration_type = meta_dictionary['genetic_alteration_type'] - data_type = meta_dictionary['datatype'] - # validate the genetic_alteration_type/data_type combination: - if (genetic_alteration_type, data_type) not in alt_type_datatype_and_stable_id: - # unexpected as this is already validated in get_meta_file_type - raise RuntimeError('Unexpected error: genetic_alteration_type and data_type combination not found in allowed_data_types.txt.', - genetic_alteration_type, data_type) - # Check whether a wild card ('*') is set in allowed_data_types.txt for the alteration type-data type combination. - # For these entries the stable_id is not validated, but assumed to be checked for uniqueness by the user. - elif alt_type_datatype_and_stable_id[(genetic_alteration_type, data_type)][0] == "*": - pass - # validate stable_id: - elif stable_id not in alt_type_datatype_and_stable_id[(genetic_alteration_type, data_type)]: - logger.error("Invalid stable id for genetic_alteration_type '%s', " - "data_type '%s'; expected one of [%s]", - genetic_alteration_type, - data_type, - ', '.join(alt_type_datatype_and_stable_id[(genetic_alteration_type, data_type)]), - extra={'filename_': filename, - 'cause': stable_id} - ) - result = False - - return result - - -def parse_metadata_file(filename, - logger, - study_id=None, - case_list=False, - gene_panel_list=None): - - """Validate a metafile and return a dictionary of values read from it and - the meta_file_type according to get_meta_file_type. - - `meta_file_type` will be `None` if the file is invalid. If `case_list` - is True, read the file as a case list instead of a meta file. - - :param filename: name of the meta file - :param logger: the logging.Logger instance to log warnings and errors to - :param study_id: (optional - set if you want study_id to be validated) - cancer study id found in previous files (or None). All subsequent - meta files should comply to this in the field 'cancer_study_identifier' - :param case_list: whether this meta file is a case list (special case) - :param gene_panel_list: (optional - set if you want this to be validated) - list of gene panels in the database - """ - - logger.debug('Starting validation of meta file', extra={'filename_': filename}) - - # Read meta file - meta_dictionary = OrderedDict() - with open(filename, 'r') as metafile: - for line_index, line in enumerate(metafile): - # skip empty lines: - if line.strip() == '': - continue - if ':' not in line: - logger.error( - "Invalid %s file entry, no ':' found", - {True: 'case list', False: 'meta'}[case_list], - extra={'filename_': filename, - 'line_number': line_index + 1}) - meta_dictionary['meta_file_type'] = None - return dict(meta_dictionary) - key_value = line.split(':', 1) - if len(key_value) == 2: - meta_dictionary[key_value[0]] = key_value[1].strip() - - # Determine meta file type - if case_list: - meta_file_type = MetaFileTypes.CASE_LIST - meta_dictionary['meta_file_type'] = meta_file_type - else: - meta_file_type = get_meta_file_type(meta_dictionary, logger, filename) - meta_dictionary['meta_file_type'] = meta_file_type - # if type could not be inferred, no further validations are possible - if meta_file_type is None: - return dict(meta_dictionary) - - - # Check for missing fields for this specific meta file type - missing_fields = [] - for field in META_FIELD_MAP[meta_file_type]: - mandatory = META_FIELD_MAP[meta_file_type][field] - if field not in meta_dictionary and mandatory: - logger.error("Missing field '%s' in %s file", - field, - {True: 'case list', False: 'meta'}[case_list], - extra={'filename_': filename}) - missing_fields.append(field) - - if missing_fields: - # all further checks would depend on these fields being present - meta_dictionary['meta_file_type'] = None - return dict(meta_dictionary) - - # validate genetic_alteration_type, datatype, stable_id - stable_id_mandatory = META_FIELD_MAP[meta_file_type].get('stable_id', - False) - if stable_id_mandatory: - valid_types_and_id = validate_types_and_id(meta_dictionary, logger, filename) - if not valid_types_and_id: - # invalid meta file type - meta_dictionary['meta_file_type'] = None - return dict(meta_dictionary) - - # check for extra unrecognized fields - for field in meta_dictionary: - if field not in META_FIELD_MAP[meta_file_type]: - - # Don't give warning for added 'meta_file_type' - if field == "meta_file_type": - pass - else: - logger.warning( - 'Unrecognized field in %s file', - {True: 'case list', False: 'meta'}[case_list], - extra={'filename_': filename, - 'cause': field}) - - # check that cancer study identifiers across files so far are consistent. - if ( - study_id is not None and - 'cancer_study_identifier' in meta_dictionary and - study_id != meta_dictionary['cancer_study_identifier']): - logger.error( - "Cancer study identifier is not consistent across " - "files, expected '%s'", - study_id, - extra={'filename_': filename, - 'cause': meta_dictionary['cancer_study_identifier']}) - # not a valid meta file in this study - meta_dictionary['meta_file_type'] = None - return dict(meta_dictionary) - - # type-specific validations - - # Validate length of attributes in meta study file - # TODO: do this for all other meta files as well - meta_study_attribute_size_dict = {'cancer_study_identifier': 255, - 'type_of_cancer': 63, - 'name': 255, - 'description': 1024, - 'citation': 200, - 'pmid': 1024, - 'groups': 200, - 'short_name': 64 - } - if meta_file_type == MetaFileTypes.STUDY: - for attribute in meta_study_attribute_size_dict: - if attribute in meta_dictionary: - if len(meta_dictionary[attribute]) > meta_study_attribute_size_dict[attribute]: - logger.error("The maximum length of the '%s' " - "value is %s" % (attribute, - meta_study_attribute_size_dict[attribute]), - extra={'filename_': filename, - 'cause': meta_dictionary[attribute] + ' (%s)' % len(meta_dictionary[attribute])} - ) - - # Restrict the show_profile_in_analysis_tab value to false (https://github.com/cBioPortal/cbioportal/issues/5023) - if meta_file_type in (MetaFileTypes.CNA_CONTINUOUS, MetaFileTypes.CNA_LOG2): - if meta_dictionary['show_profile_in_analysis_tab'] != 'false': - logger.error("The 'show_profile_in_analysis_tab' setting must be 'false', as this is only applicable for " - "CNA data of the DISCRETE type.", - extra={'filename_': filename, - 'cause': 'show_profile_in_analysis_tab: %s' % meta_dictionary['show_profile_in_analysis_tab']}) - - if meta_file_type in (MetaFileTypes.SEG, MetaFileTypes.GISTIC_GENES): - # Todo: Restore validation for reference genome in segment files - # Validation can be restored to normal when hg18 data on public portal and data hub has been - # liftovered to hg19. It was decided in the data hub call of August 14 2018 to remove validation until then. - valid_segment_reference_genomes = ['hg19','hg38'] - if meta_dictionary['reference_genome_id'] not in valid_segment_reference_genomes: - logger.error( - 'Reference_genome_id is not %s', - ' or '.join(valid_segment_reference_genomes), - extra={'filename_': filename, - 'cause': meta_dictionary['reference_genome_id']}) - meta_dictionary['meta_file_type'] = None - - if meta_file_type in [MetaFileTypes.MUTATION, MetaFileTypes.MUTATION_UNCALLED]: - if ('swissprot_identifier' in meta_dictionary and - meta_dictionary['swissprot_identifier'] not in ('name', - 'accession')): - logger.error( - "Invalid swissprot_identifier specification, must be either " - "'name' or 'accession'", - extra={'filename_': filename, - 'cause': meta_dictionary['swissprot_identifier']}) - meta_dictionary['meta_file_type'] = None - - # Check whether the gene panel property is included in the mutation meta file. This should be an error. - if 'gene_panel' in meta_dictionary: - logger.warning("Including the stable ID for gene panels in meta file might lead to incorrect " - "results for samples that are profiled but nu mutations are called. Consider adding a column" - " for mutation profile to gene panel matrix file", - extra={'filename_': filename, - 'cause': 'gene_panel: %s' % meta_dictionary['gene_panel']}) - - # When validating - if gene_panel_list: - # Check whether the gene panel in the gene panel property field corresponds with a gene panel in the database - if 'gene_panel' in meta_dictionary: - if meta_dictionary['gene_panel'] not in gene_panel_list and meta_dictionary['gene_panel'] != 'NA': - logger.error('Gene panel ID is not in database. Please import this gene panel before loading ' - 'study data.', - extra={'filename_': filename, - 'cause': meta_dictionary['gene_panel']}) - - # Save information regarding `source_stable_id`, so that after all meta files are validated, - # we can validate fields between meta files in validate_data_relations() in validateData.py - global gsva_scores_stable_id - global gsva_scores_source_stable_id - global gsva_pvalues_source_stable_id - global gsva_scores_filename - global gsva_pvalues_filename - - # save all expression `stable_id` in a dictionary with their filenames - if meta_file_type is MetaFileTypes.EXPRESSION: - if 'stable_id' in meta_dictionary: - expression_stable_ids[meta_dictionary['stable_id']] = filename - - # Save all zscore expression `source_stable_id` in dictionary with their filenames. - # Multiple zscore expression files are possible, and we want to validate all their - # source_stable_ids with expression stable ids - if meta_dictionary['datatype'] == "Z-SCORE": - if 'source_stable_id' in meta_dictionary: - expression_zscores_source_stable_ids[meta_dictionary['source_stable_id']] = filename - - # save stable_id and source_stable_id of GSVA Scores - if meta_file_type is MetaFileTypes.GSVA_SCORES: - gsva_scores_filename = filename - if 'source_stable_id' in meta_dictionary: - gsva_scores_source_stable_id = meta_dictionary['source_stable_id'] - - # save 'stable_id' to check the 'source_stable_id' in GSVA_PVALUES file - if 'stable_id' in meta_dictionary: - gsva_scores_stable_id = meta_dictionary['stable_id'] - - # save stable_id and source_stable_id of GSVA Pvalues - if meta_file_type is MetaFileTypes.GSVA_PVALUES: - gsva_pvalues_filename = filename - if 'source_stable_id' in meta_dictionary: - gsva_pvalues_source_stable_id = meta_dictionary['source_stable_id'] - - logger.info('Validation of meta file complete', extra={'filename_': filename}) - - return meta_dictionary - - -def run_java(*args): - java_home = os.environ.get('JAVA_HOME', '') - if java_home: - java_command = os.path.join(java_home, 'bin', 'java') - else: - java_command = 'java' - process = Popen([java_command] + list(args), stdout=PIPE, stderr=STDOUT, - universal_newlines=True) - ret = [] - while process.poll() is None: - line = process.stdout.readline() - if line != '' and line.endswith('\n'): - print(line.strip(), file=OUTPUT_FILE) - ret.append(line[:-1]) - ret.append(process.returncode) - # if cmd line parameters error: - if process.returncode == 64 or process.returncode == 2: - raise RuntimeError('Aborting. Step failed due to wrong parameters passed to subprocess.') - # any other error: - elif process.returncode != 0: - raise RuntimeError('Aborting due to error while executing step.') - return ret - - -def properties_error_message(display_name: str, property_name: str) -> str: - return f"No {display_name} provided for database connection. Please set '{property_name}' in portal.properties." - - -class PortalProperties(object): - """ Properties object class, just has fields for db conn """ - - def __init__(self, database_user, database_pw, database_url): - self.database_user = database_user - self.database_pw = database_pw - self.database_url = database_url - - -def get_database_properties(properties_filename: str) -> Optional[PortalProperties]: - - properties = parse_properties_file(properties_filename) - - missing_properties = [] - for required_property in REQUIRED_DATABASE_PROPERTIES: - if required_property not in properties or len(properties[required_property]) == 0: - missing_properties.append(required_property) - if missing_properties: - print( - 'Missing required properties : (%s)' % (', '.join(missing_properties)), - file=ERROR_FILE) - return None - - if properties.get(PORTAL_PROPERTY_DATABASE_HOST) is not None \ - or properties.get(PORTAL_PROPERTY_DATABASE_NAME) is not None \ - or properties.get(PORTAL_PROPERTY_DATABASE_USESSL) is not None: - print(""" - ---------------------------------------------------------------------------------------------------------------- - -- Connection error: - -- You try to connect to the database using the deprecated 'db.host', 'db.portal_db_name' and 'db.use_ssl' properties. - -- Please remove these properties and use the 'db.connection_string' property instead. See https://docs.cbioportal.org/deployment/customization/portal.properties-reference/ - -- for assistance on building a valid connection string. - ------------------------------------------------------------f--------------------------------------------------- - """, file=ERROR_FILE) - return None - - return PortalProperties(properties[PORTAL_PROPERTY_DATABASE_USER], - properties[PORTAL_PROPERTY_DATABASE_PW], - properties[PORTAL_PROPERTY_DATABASE_URL]) - - -def parse_properties_file(properties_filename: str) -> Dict[str, str]: - - if not os.path.exists(properties_filename): - print('properties file %s cannot be found' % properties_filename, file=ERROR_FILE) - sys.exit(2) - - properties = {} - with open(properties_filename, 'r') as properties_file: - for line in properties_file: - line = line.strip() - # skip line if its blank or a comment - if len(line) == 0 or line.startswith('#'): - continue - try: - name, value = line.split('=', maxsplit=1) - except ValueError: - print( - 'Skipping invalid entry in property file: %s' % line, - file=ERROR_FILE) - continue - properties[name] = value.strip() - return properties - - -def get_db_cursor(portal_properties: PortalProperties): - - try: - url_elements = dsnparse.parse(portal_properties.database_url) - connection_kwargs = { - "host": url_elements.host, - "port": url_elements.port if url_elements.port is not None else 3306, - "db": url_elements.paths[0], - "user": portal_properties.database_user, - "passwd": portal_properties.database_pw - } - if url_elements.query.get("useSSL") == "true": - connection_kwargs['ssl_mode'] = 'REQUIRED' - connection_kwargs['ssl'] = {"ssl_mode": True} - else: - connection_kwargs['ssl_mode'] = 'DISABLED' - if url_elements.query.get("get-server-public-key") == "true": - connection_kwargs['ssl'] = { - 'MYSQL_OPT_GET_SERVER_PUBLIC_KEY': True - } - connection = MySQLdb.connect(**connection_kwargs) - except MySQLdb.Error as exception: - print(exception, file=ERROR_FILE) - message = ( - "--> Error connecting to server with URL: " - + portal_properties.database_url) - print(message, file=ERROR_FILE) - raise ConnectionError(message) from exception - if connection is not None: - return connection, connection.cursor() diff --git a/core/src/main/scripts/importer/chromosome_sizes.json b/core/src/main/scripts/importer/chromosome_sizes.json deleted file mode 100644 index 4a6ddebb99a..00000000000 --- a/core/src/main/scripts/importer/chromosome_sizes.json +++ /dev/null @@ -1 +0,0 @@ -{"hg19": {"1": 249250621, "2": 243199373, "3": 198022430, "4": 191154276, "5": 180915260, "6": 171115067, "7": 159138663, "X": 155270560, "8": 146364022, "9": 141213431, "10": 135534747, "11": 135006516, "12": 133851895, "13": 115169878, "14": 107349540, "15": 102531392, "16": 90354753, "17": 81195210, "18": 78077248, "20": 63025520, "Y": 59373566, "19": 59128983, "22": 51304566, "21": 48129895}, "hg38": {"1": 248956422, "2": 242193529, "3": 198295559, "4": 190214555, "5": 181538259, "6": 170805979, "7": 159345973, "X": 156040895, "8": 145138636, "9": 138394717, "11": 135086622, "10": 133797422, "12": 133275309, "13": 114364328, "14": 107043718, "15": 101991189, "16": 90338345, "17": 83257441, "18": 80373285, "20": 64444167, "19": 58617616, "Y": 57227415, "22": 50818468, "21": 46709983}, "mm10": {"1": 195471971, "2": 182113224, "X": 171031299, "3": 160039680, "4": 156508116, "5": 151834684, "6": 149736546, "7": 145441459, "10": 130694993, "8": 129401213, "14": 124902244, "9": 124595110, "11": 122082543, "13": 120421639, "12": 120129022, "15": 104043685, "16": 98207768, "17": 94987271, "Y": 91744698, "18": 90702639, "19": 61431566}} \ No newline at end of file diff --git a/core/src/main/scripts/importer/data_cna_pd_annotations.txt b/core/src/main/scripts/importer/data_cna_pd_annotations.txt deleted file mode 100644 index 55d03a9bfe7..00000000000 --- a/core/src/main/scripts/importer/data_cna_pd_annotations.txt +++ /dev/null @@ -1,1744 +0,0 @@ -SAMPLE_ID Entrez_Gene_Id cbp_driver cbp_driver_annotation -TCGA-A1-A0SD-01 116983 Putative_Passenger -TCGA-A1-A0SH-01 116983 Putative_Passenger -TCGA-A1-A0SM-01 116983 Putative_Passenger -TCGA-A1-A0SN-01 116983 Putative_Passenger -TCGA-A1-A0SO-01 116983 Putative_Passenger -TCGA-A2-A04R-01 116983 Putative_Passenger -TCGA-A2-A04U-01 116983 Putative_Passenger -TCGA-A2-A04Y-01 116983 Putative_Passenger -TCGA-A2-A0CS-01 116983 Putative_Passenger -TCGA-A2-A0CT-01 116983 Putative_Passenger -TCGA-A2-A0CW-01 116983 Putative_Passenger -TCGA-A2-A0D0-01 116983 Putative_Passenger -TCGA-A2-A0D4-01 116983 Putative_Passenger -TCGA-A2-A0EN-01 116983 Putative_Passenger -TCGA-A2-A0EO-01 116983 Putative_Passenger -TCGA-A2-A0ET-01 116983 Putative_Passenger -TCGA-A2-A0EY-01 116983 Putative_Passenger -TCGA-A2-A0T2-01 116983 Putative_Passenger -TCGA-A2-A0T4-01 116983 Putative_Passenger -TCGA-A2-A0T7-01 116983 Putative_Passenger -TCGA-A2-A0YF-01 116983 Putative_Passenger -TCGA-A2-A0YI-01 116983 Putative_Passenger -TCGA-A2-A0YJ-01 116983 Putative_Passenger -TCGA-A2-A1FX-01 116983 Putative_Passenger -TCGA-A2-A1G0-01 116983 Putative_Passenger -TCGA-A2-A25C-01 116983 Putative_Passenger -TCGA-A7-A13F-01 116983 Putative_Passenger -TCGA-A7-A26F-01 116983 Putative_Passenger -TCGA-A8-A06T-01 116983 Putative_Passenger -TCGA-A8-A06U-01 116983 Putative_Passenger -TCGA-A8-A06Y-01 116983 Putative_Passenger -TCGA-A8-A06Z-01 116983 Putative_Passenger -TCGA-A8-A075-01 116983 Putative_Passenger -TCGA-A8-A076-01 116983 Putative_Passenger -TCGA-A8-A079-01 116983 Putative_Passenger -TCGA-A8-A07B-01 116983 Putative_Passenger -TCGA-A8-A07F-01 116983 Putative_Passenger -TCGA-A8-A07L-01 116983 Putative_Passenger -TCGA-A8-A081-01 116983 Putative_Passenger -TCGA-A8-A084-01 116983 Putative_Passenger -TCGA-A8-A08I-01 116983 Putative_Passenger -TCGA-A8-A08J-01 116983 Putative_Passenger -TCGA-A8-A08O-01 116983 Putative_Passenger -TCGA-A8-A08S-01 116983 Putative_Passenger -TCGA-A8-A092-01 116983 Putative_Passenger -TCGA-A8-A099-01 116983 Putative_Passenger -TCGA-A8-A09A-01 116983 Putative_Passenger -TCGA-A8-A09C-01 116983 Putative_Passenger -TCGA-A8-A09E-01 116983 Putative_Passenger -TCGA-A8-A09I-01 116983 Putative_Passenger -TCGA-A8-A09M-01 116983 Putative_Passenger -TCGA-A8-A09R-01 116983 Putative_Passenger -TCGA-A8-A09W-01 116983 Putative_Passenger -TCGA-A8-A0A2-01 116983 Putative_Passenger -TCGA-A8-A0AB-01 116983 Putative_Passenger -TCGA-AN-A03X-01 116983 Putative_Passenger -TCGA-AN-A03Y-01 116983 Putative_Passenger -TCGA-AN-A041-01 116983 Putative_Passenger -TCGA-AN-A049-01 116983 Putative_Passenger -TCGA-AN-A04A-01 116983 Putative_Passenger -TCGA-AN-A04D-01 116983 Putative_Passenger -TCGA-AN-A0AJ-01 116983 Putative_Passenger -TCGA-AN-A0AK-01 116983 Putative_Passenger -TCGA-AN-A0AL-01 116983 Putative_Passenger -TCGA-AN-A0FD-01 116983 Putative_Passenger -TCGA-AN-A0FJ-01 116983 Putative_Passenger -TCGA-AN-A0FK-01 116983 Putative_Passenger -TCGA-AN-A0FL-01 116983 Putative_Passenger -TCGA-AN-A0FT-01 116983 Putative_Passenger -TCGA-AN-A0FV-01 116983 Putative_Passenger -TCGA-AN-A0FY-01 116983 Putative_Passenger -TCGA-AN-A0XT-01 116983 Putative_Passenger -TCGA-AN-A0XU-01 116983 Putative_Passenger -TCGA-AO-A03L-01 116983 Putative_Passenger -TCGA-AO-A03N-01 116983 Putative_Passenger -TCGA-AO-A0J3-01 116983 Putative_Passenger -TCGA-AO-A0J4-01 116983 Putative_Passenger -TCGA-AO-A0J6-01 116983 Putative_Passenger -TCGA-AO-A0J7-01 116983 Putative_Passenger -TCGA-AO-A0J9-01 116983 Putative_Passenger -TCGA-AO-A0JA-01 116983 Putative_Passenger -TCGA-AO-A0JE-01 116983 Putative_Passenger -TCGA-AO-A0JG-01 116983 Putative_Passenger -TCGA-AO-A0JI-01 116983 Putative_Passenger -TCGA-AO-A0JM-01 116983 Putative_Passenger -TCGA-AO-A129-01 116983 Putative_Passenger -TCGA-AO-A12F-01 116983 Putative_Passenger -TCGA-AO-A1KP-01 116983 Putative_Passenger -TCGA-AO-A1KQ-01 116983 Putative_Passenger -TCGA-AO-A1KS-01 116983 Putative_Passenger -TCGA-AO-A1KT-01 116983 Putative_Passenger -TCGA-AQ-A0Y5-01 116983 Putative_Passenger -TCGA-AR-A0TW-01 116983 Putative_Passenger -TCGA-AR-A0TY-01 116983 Putative_Passenger -TCGA-AR-A0TZ-01 116983 Putative_Passenger -TCGA-AR-A0U1-01 116983 Putative_Passenger -TCGA-AR-A0U3-01 116983 Putative_Passenger -TCGA-AR-A1AH-01 116983 Putative_Passenger -TCGA-AR-A1AW-01 116983 Putative_Passenger -TCGA-AR-A1AY-01 116983 Putative_Passenger -TCGA-AR-A24H-01 116983 Putative_Passenger -TCGA-AR-A24L-01 116983 Putative_Passenger -TCGA-AR-A24Q-01 116983 Putative_Passenger -TCGA-AR-A24R-01 116983 Putative_Passenger -TCGA-AR-A24S-01 116983 Putative_Passenger -TCGA-AR-A24T-01 116983 Putative_Passenger -TCGA-AR-A250-01 116983 Putative_Passenger -TCGA-AR-A251-01 116983 Putative_Passenger -TCGA-AR-A254-01 116983 Putative_Passenger -TCGA-AR-A255-01 116983 Putative_Passenger -TCGA-AR-A256-01 116983 Putative_Passenger -TCGA-B6-A0I9-01 116983 Putative_Passenger -TCGA-B6-A0IB-01 116983 Putative_Passenger -TCGA-B6-A0RE-01 116983 Putative_Passenger -TCGA-B6-A0RG-01 116983 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Putative_Passenger -TCGA-C8-A134-01 2073 Putative_Passenger -TCGA-C8-A138-01 2073 Putative_Passenger -TCGA-C8-A1HJ-01 2073 Putative_Passenger -TCGA-C8-A1HK-01 2073 Putative_Passenger -TCGA-C8-A1HL-01 2073 Putative_Passenger -TCGA-C8-A26W-01 2073 Putative_Passenger -TCGA-C8-A274-01 2073 Putative_Passenger -TCGA-C8-A27A-01 2073 Putative_Passenger -TCGA-D8-A13Y-01 2073 Putative_Passenger -TCGA-D8-A147-01 2073 Putative_Passenger -TCGA-D8-A1J8-01 2073 Putative_Passenger -TCGA-D8-A1JA-01 2073 Putative_Passenger -TCGA-D8-A1JC-01 2073 Putative_Passenger -TCGA-D8-A1JD-01 2073 Putative_Passenger -TCGA-D8-A1JE-01 2073 Putative_Passenger -TCGA-D8-A1JF-01 2073 Putative_Passenger -TCGA-D8-A1JI-01 2073 Putative_Passenger -TCGA-D8-A1JJ-01 2073 Putative_Passenger -TCGA-D8-A1JL-01 2073 Putative_Passenger -TCGA-D8-A1JM-01 2073 Putative_Passenger -TCGA-D8-A1X5-01 2073 Putative_Passenger -TCGA-D8-A1X8-01 2073 Putative_Passenger -TCGA-D8-A1XF-01 2073 Putative_Passenger -TCGA-D8-A1XG-01 2073 Putative_Passenger -TCGA-D8-A1XJ-01 2073 Putative_Passenger -TCGA-D8-A1XK-01 2073 Putative_Passenger -TCGA-D8-A1XL-01 2073 Putative_Passenger -TCGA-D8-A1XR-01 2073 Putative_Passenger -TCGA-D8-A1XS-01 2073 Putative_Passenger -TCGA-D8-A1XT-01 2073 Putative_Passenger -TCGA-D8-A1XU-01 2073 Putative_Passenger -TCGA-D8-A1XY-01 2073 Putative_Passenger -TCGA-D8-A1XZ-01 2073 Putative_Passenger -TCGA-D8-A1Y0-01 2073 Putative_Passenger -TCGA-D8-A1Y1-01 2073 Putative_Passenger -TCGA-D8-A27F-01 2073 Putative_Passenger -TCGA-D8-A27H-01 2073 Putative_Passenger -TCGA-E2-A107-01 2073 Putative_Passenger -TCGA-E2-A109-01 2073 Putative_Passenger -TCGA-E2-A10A-01 2073 Putative_Passenger -TCGA-E2-A10E-01 2073 Putative_Passenger -TCGA-E2-A14O-01 2073 Putative_Passenger -TCGA-E2-A14R-01 2073 Putative_Passenger -TCGA-E2-A14V-01 2073 Putative_Passenger -TCGA-E2-A150-01 2073 Putative_Passenger -TCGA-E2-A154-01 2073 Putative_Passenger -TCGA-E2-A158-01 2073 Putative_Passenger -TCGA-E2-A159-01 2073 Putative_Passenger -TCGA-E2-A15H-01 2073 Putative_Passenger -TCGA-E2-A15O-01 2073 Putative_Passenger -TCGA-E2-A15R-01 2073 Putative_Passenger -TCGA-E2-A1IE-01 2073 Putative_Passenger -TCGA-E2-A1IH-01 2073 Putative_Passenger -TCGA-E2-A1II-01 2073 Putative_Passenger -TCGA-E2-A1L7-01 2073 Putative_Passenger -TCGA-E2-A1L8-01 2073 Putative_Passenger -TCGA-E2-A1LA-01 2073 Putative_Passenger -TCGA-E2-A1LB-01 2073 Putative_Passenger -TCGA-E2-A1LG-01 2073 Putative_Passenger -TCGA-E2-A1LH-01 2073 Putative_Passenger -TCGA-E2-A1LL-01 2073 Putative_Passenger -TCGA-E9-A1N9-01 2073 Putative_Passenger -TCGA-E9-A1NC-01 2073 Putative_Passenger -TCGA-E9-A1NH-01 2073 Putative_Passenger -TCGA-E9-A1R2-01 2073 Putative_Passenger -TCGA-E9-A1R3-01 2073 Putative_Passenger -TCGA-E9-A1R5-01 2073 Putative_Passenger -TCGA-E9-A1R7-01 2073 Putative_Passenger -TCGA-E9-A1RC-01 2073 Putative_Passenger -TCGA-E9-A1RE-01 2073 Putative_Passenger -TCGA-E9-A1RF-01 2073 Putative_Passenger -TCGA-E9-A226-01 2073 Putative_Passenger -TCGA-E9-A229-01 2073 Putative_Passenger -TCGA-E9-A22A-01 2073 Putative_Passenger -TCGA-E9-A22G-01 2073 Putative_Passenger -TCGA-E9-A244-01 2073 Putative_Passenger -TCGA-E9-A247-01 2073 Putative_Passenger -TCGA-E9-A295-01 2073 Putative_Passenger -TCGA-EW-A1IW-01 2073 Putative_Passenger -TCGA-EW-A1J6-01 2073 Putative_Passenger -TCGA-EW-A1OV-01 2073 Putative_Passenger -TCGA-EW-A1OW-01 2073 Putative_Passenger -TCGA-EW-A1OY-01 2073 Putative_Passenger -TCGA-EW-A1PF-01 2073 Putative_Passenger -TCGA-EW-A2FW-01 2073 Putative_Passenger -TCGA-GI-A2C8-01 2073 Putative_Passenger diff --git a/core/src/main/scripts/importer/importOncokbDiscreteCNA.py b/core/src/main/scripts/importer/importOncokbDiscreteCNA.py deleted file mode 100644 index 1e81da6b70f..00000000000 --- a/core/src/main/scripts/importer/importOncokbDiscreteCNA.py +++ /dev/null @@ -1,279 +0,0 @@ -#!/usr/bin/env python3 - -# -# Copyright (c) 2020 The Hyve B.V. -# This code is licensed under the GNU Affero General Public License (AGPL), -# version 3, or (at your option) any later version. -# - -# -# This file is part of cBioPortal. -# -# cBioPortal is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as -# published by the Free Software Foundation, either version 3 of the -# License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . -# - -"""OncoKB annotation import script for discrete CNA files. -""" - -import importlib -import logging.handlers -import os -import sys -from os import path -from pathlib import Path - -""" Configure relative imports if running as a script; see PEP 366 - It might passed as empty string by certain tooling to mark a top level module. """ -if __name__ == "__main__" and (__package__ is None or __package__ == ''): - """ Replace the script's location in the Python search path by the main - scripts/ folder, above it, so that the importer package folder is in - scope and *not* directly in sys.path; see PEP 395. """ - sys.path[0] = str(Path(sys.path[0]).resolve().parent) - __package__ = 'importer' - """ Explicitly import the package, which is needed on CPython 3.4 because it - doesn't include https://github.com/python/cpython/pull/2639. """ - importlib.import_module(__package__) - -from . import cbioportal_common -from . import libImportOncokb -from . import validateData - -FIELD_ENTREZ_ID = 'Entrez_Gene_Id' -FIELD_HUGO_SYMBOL = 'Hugo_Symbol' -CNA_TYPE = 'copyNameAlterationType' -ALTERATION = 'alteration' -SAMPLE_ID = 'sample_id' -INTERNAL_ID = 'id' -ONCOGENIC = libImportOncokb.ONCOKB_JSON_ONCOGENIC_FIELD - -required_cna_columns = [FIELD_HUGO_SYMBOL] - -# from: cbioportal-frontend file CopyNumberUtils.ts -cna_alteration_types = { - "DELETION": -2, - "LOSS": -1, - "GAIN": 1, - "AMPLIFICATION": 2, -} -cna_null_values = [ - '0', - 'NA', - 'nan', - '' -] - - -def main_import(args): - - study_dir = args.study_directory - server_url = args.url_server - - # get a logger to emit messages - logger = logging.getLogger(__name__) - logger.setLevel(logging.INFO) - exit_status_handler = validateData.MaxLevelTrackingHandler() - logger.addHandler(exit_status_handler) - - # set default message handler - text_handler = logging.StreamHandler(sys.stdout) - text_handler.setFormatter( - cbioportal_common.LogfileStyleFormatter(study_dir)) - collapsing_text_handler = cbioportal_common.CollapsingLogMessageHandler( - capacity=5e5, - flushLevel=logging.CRITICAL, - target=text_handler) - collapsing_text_handler.setLevel(logging.INFO) - logger.addHandler(collapsing_text_handler) - - meta_cna_file_path = libImportOncokb.find_meta_file_by_fields(study_dir, {'genetic_alteration_type': 'COPY_NUMBER_ALTERATION', 'datatype': 'DISCRETE'}) - cna_file_path = os.path.join(study_dir, libImportOncokb.find_data_file_from_meta_file(meta_cna_file_path)) - pd_file_name = 'data_cna_pd_annotations.txt' - pd_file_path = os.path.join(study_dir, pd_file_name) - meta_dict = libImportOncokb.read_meta_file(meta_cna_file_path) - if 'pd_annotations_filename' in meta_dict: - raise RuntimeError( - "Custom driver annotations filename already specified in discrete CNA meta file. Please remove and rerun.") - if path.exists(pd_file_path): - raise RuntimeError( - "Custom driver annotations file '" + pd_file_path + "' for discrete CNA already exists . Please remove and rerun.") - libImportOncokb.check_required_columns(libImportOncokb.get_first_line_cells(libImportOncokb.open_file(cna_file_path), '\t'), required_cna_columns) - - global portal_instance - if hasattr(args, 'portal_info_dir') and args.portal_info_dir is not None: - portal_instance = validateData.load_portal_info(args.portal_info_dir, logger, - offline=True) - else: - portal_instance = validateData.load_portal_info(server_url, logger) - - cna_events = get_cna_events(cna_file_path, server_url, portal_instance.alias_entrez_map) - id_to_annotation = fetch_and_map_oncokb_annotations(cna_events) - for cna_event in cna_events: - if cna_event[INTERNAL_ID] in id_to_annotation: - cna_event[ONCOGENIC] = id_to_annotation[cna_event[INTERNAL_ID]][ONCOGENIC] - - print("Updating study files ...", end = '') - write_annotations_to_file(cna_events, pd_file_path) - update_cna_metafile(meta_cna_file_path, pd_file_name) - print(" DONE") - - logger.info('Import complete') - - return exit_status_handler.get_exit_status() - -def get_cna_events(cna_file_path, server_url=None, alias_map=None): - """Extract CNA events from CNA data file.""" - assert server_url or alias_map, 'At least one of "server_url" or "alias_map" must be specified' - header_elements = libImportOncokb.get_first_line_cells(libImportOncokb.open_file(cna_file_path), '\t') - header_indexes = {} - for required_column in required_cna_columns + [FIELD_ENTREZ_ID]: - header_indexes[required_column] = header_elements.index(required_column) - sample_ids = [i for j, i in enumerate(header_elements) if j not in header_indexes.values()] - sample_indexes = {} - for sample_id in sample_ids: - sample_indexes[sample_id] = header_elements.index(sample_id) - - # reduce API requests - resolved_aliases = {} - - features = [] - cna_file = libImportOncokb.open_file(cna_file_path) - print("Reading features from file ...", end = '') - for line in cna_file: - if line == '\n' or line.startswith('#') or line.startswith(header_elements[0]): - continue # skip comment and header line - line_elements = line.rstrip('\n').split('\t') - for sample_id in sample_ids: - feature = {} - feature[SAMPLE_ID] = sample_id - cna_value = line_elements[sample_indexes[sample_id]] - try: - feature[ALTERATION] = 0 if cna_value in cna_null_values else int(round(float(cna_value))) - except TypeError: - continue - # CNA value 0 (no CNA) is skipped - if not feature[ALTERATION] in cna_alteration_types.values(): - continue - feature[CNA_TYPE] = list(cna_alteration_types.keys())[ - list(cna_alteration_types.values()).index(feature[ALTERATION])] - for column_name, index in header_indexes.items(): - value = line_elements[index] - if value != '': - feature[column_name] = value - elif column_name != FIELD_ENTREZ_ID: - print(Color.RED + "Empty value encounterd in column '" + column_name + "' in row " + str( - row_counter) + ". OncoKB annotations cannot be imported. Please fix and rerun." + Color.END, - file=sys.stderr) - print("!" * 71, file=sys.stderr) - sys.exit(1) - - # resolve gene symbols to Entrez Ids if needed - if FIELD_ENTREZ_ID in feature and feature[FIELD_ENTREZ_ID] is not None and feature[ - FIELD_ENTREZ_ID] != '': - entrez_gene_ids = [feature[FIELD_ENTREZ_ID]] - elif feature[FIELD_HUGO_SYMBOL] in portal_instance.hugo_entrez_map: - # in case of failure, try aliases - entrez_gene_ids = portal_instance.hugo_entrez_map.get( - feature[FIELD_HUGO_SYMBOL], - resolved_aliases.get(feature[FIELD_HUGO_SYMBOL]) - ) or libImportOncokb.try_get_entrez_from_alias(feature[FIELD_HUGO_SYMBOL], server_url, alias_map) - resolved_aliases[feature[FIELD_HUGO_SYMBOL]] = entrez_gene_ids - - if len(entrez_gene_ids) > 1: - logger.error(""" Multiple Entrez gene ids were found for a gene. - OncoKB annotations will not be imported for this gene. - Please fix and rerun. """, - extra={'symbol': feature[FIELD_HUGO_SYMBOL]}) - feature[FIELD_ENTREZ_ID] = None - elif len(entrez_gene_ids) == 0: - logger.error(""" Could not find the Entrez gene id for a gene. - OncoKB annotations will not be imported for this gene. - Please fix and rerun. """, - extra={'symbol': feature[FIELD_HUGO_SYMBOL]}) - feature[FIELD_ENTREZ_ID] = None - else: - feature[FIELD_ENTREZ_ID] = str(entrez_gene_ids[0]) - feature[INTERNAL_ID] = "_".join([feature[FIELD_ENTREZ_ID], feature[CNA_TYPE]]) - - features.append(feature) - cna_file.close() - # FIXME this should not occur, right? - # Remove duplicate entrez_gene_id/sample_id occurrences. - non_redundant_features_dict = {x[FIELD_ENTREZ_ID]+x[SAMPLE_ID]:x for x in features} - print(" DONE") - return non_redundant_features_dict.values(); - - -def fetch_and_map_oncokb_annotations(features): - """Submit CNA events to OncoKB.org and return OncoKB annotations.""" - id_to_annotation = {} - payload_list = create_request_payload(features) - annotations = libImportOncokb.fetch_oncokb_annotations(payload_list, libImportOncokb.DEFAULT_ONCOKB_URL + "/annotate/copyNumberAlterations") - for annotation in annotations: - id = annotation[libImportOncokb.ONCOKB_JSON_QUERY_FIELD][libImportOncokb.ONCOKB_JSON_ID_FIELD] - id_to_annotation[id] = annotation - return id_to_annotation - - -def create_request_payload(features): - """Translate CNA events into JSON for message body.""" - elements = {} - for feature in features: - elements[feature[INTERNAL_ID]] = '{ "copyNameAlterationType":"%s", "gene":{"entrezGeneId":%s}, "id":"%s", "tumorType":null} ' \ - % (feature[CNA_TYPE], feature[FIELD_ENTREZ_ID], feature[INTERNAL_ID]) - # normalize for alteration id since same alteration is represented in multiple samples - return list(elements.values()) - - -def update_cna_metafile(meta_cna_file_path, pd_file_name): - """Add reference to pd annotation file to CNA meta file.""" - meta_file = open(meta_cna_file_path, "r") - lines = meta_file.readlines() - meta_file.close() - meta_file_name = os.path.basename(meta_cna_file_path) - dir = os.path.dirname(meta_cna_file_path) - os.rename(meta_cna_file_path, os.path.join(dir, 'ONCOKB_IMPORT_BACKUP_' + meta_file_name)) - if lines[-1] == '\n': - lines = lines[:-1] - meta_file = open(meta_cna_file_path, "w") - for line in lines: - meta_file.write(line) - meta_file.write('pd_annotations_filename: ' + pd_file_name + '\n') - meta_file.close() - - -def write_annotations_to_file(features, pd_file_name): - """Write CNA pd annotations to data file.""" - new_file = open(pd_file_name, "w") - new_file.write("SAMPLE_ID\tEntrez_Gene_Id\tcbp_driver\tcbp_driver_annotation\tcbp_driver_tiers\tcbp_driver_tiers_annotation\n") - for feature in features: - if ONCOGENIC in feature: - oncokb_annotation = feature[ONCOGENIC] - line = feature[SAMPLE_ID] + '\t' + feature[FIELD_ENTREZ_ID] + libImportOncokb.get_annotation_cells(oncokb_annotation) - new_file.write(line) - new_file.close() - - -if __name__ == '__main__': - try: - parsed_args = libImportOncokb.interface() - exit_status = main_import(parsed_args) - finally: - logging.shutdown() - del logging._handlerList[:] # workaround for harmless exceptions on exit - print(('Import of OncoKB annotations for discrete CNA {status}.'.format( - status={0: 'succeeded', - 1: 'failed', - 2: 'not performed as problems occurred', - 3: 'succeeded with warnings'}.get(exit_status, 'unknown'))), file=sys.stderr) - sys.exit(exit_status) diff --git a/core/src/main/scripts/importer/importOncokbMutation.py b/core/src/main/scripts/importer/importOncokbMutation.py deleted file mode 100644 index 1b2cc9b0909..00000000000 --- a/core/src/main/scripts/importer/importOncokbMutation.py +++ /dev/null @@ -1,278 +0,0 @@ -#!/usr/bin/env python3 - -# -# Copyright (c) 2020 The Hyve B.V. -# This code is licensed under the GNU Affero General Public License (AGPL), -# version 3, or (at your option) any later version. -# - -# -# This file is part of cBioPortal. -# -# cBioPortal is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as -# published by the Free Software Foundation, either version 3 of the -# License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . -# - -"""OncoKB annotation import script for MAF files. -""" - -import importlib -import logging.handlers -import os -import sys -from pathlib import Path - -""" Configure relative imports if running as a script; see PEP 366 - It might passed as empty string by certain tooling to mark a top level module. """ -if __name__ == "__main__" and (__package__ is None or __package__ == ''): - """ Replace the script's location in the Python search path by the main - scripts/ folder, above it, so that the importer package folder is in - scope and *not* directly in sys.path; see PEP 395. """ - sys.path[0] = str(Path(sys.path[0]).resolve().parent) - __package__ = 'importer' - """ Explicitly import the package, which is needed on CPython 3.4 because it - doesn't include https://github.com/python/cpython/pull/2639. """ - importlib.import_module(__package__) - -from . import cbioportal_common -from . import libImportOncokb -from . import validateData - -required_mutation_columns = ['Hugo_Symbol', 'HGVSp_Short', 'Variant_Classification', 'Protein_position'] -disallowed_mutation_columns = ['cbp_driver', 'cbp_driver_annotation', 'cbp_driver_tiers', 'cbp_driver_tiers_annotation'] -portal_instance = None -FIELD_ENTREZ_ID = 'Entrez_Gene_Id' -FIELD_HUGO_SYMBOL = 'Hugo_Symbol' -INTERNAL_ID = 'id' -FIELD_PROTEIN_CHANGE = 'HGVSp_Short' -FIELD_VARIANT_CLASS = 'Variant_Classification' -FIELD_PROTEIN_POSITION = 'Protein_position' -ONCOGENIC = libImportOncokb.ONCOKB_JSON_ONCOGENIC_FIELD -ONCOKB_ID = libImportOncokb.ONCOKB_JSON_ID_FIELD -ONCOKB_QUERY = libImportOncokb.ONCOKB_JSON_QUERY_FIELD - -def main_import(args): - - study_dir = args.study_directory - server_url = args.url_server - - # get a logger to emit messages - logger = logging.getLogger(__name__) - logger.setLevel(logging.INFO) - exit_status_handler = validateData.MaxLevelTrackingHandler() - logger.addHandler(exit_status_handler) - - # set default message handler - text_handler = logging.StreamHandler(sys.stdout) - text_handler.setFormatter( - cbioportal_common.LogfileStyleFormatter(study_dir)) - collapsing_text_handler = cbioportal_common.CollapsingLogMessageHandler( - capacity=5e5, - flushLevel=logging.CRITICAL, - target=text_handler) - collapsing_text_handler.setLevel(logging.INFO) - logger.addHandler(collapsing_text_handler) - - meta_file_mutation = libImportOncokb.find_meta_file_by_fields(study_dir, {'genetic_alteration_type': 'MUTATION_EXTENDED'}) - mutation_file_path = os.path.join(study_dir, libImportOncokb.find_data_file_from_meta_file(meta_file_mutation)) - libImportOncokb.check_required_columns(libImportOncokb.get_first_line_cells(libImportOncokb.open_file(mutation_file_path), '\t'), required_mutation_columns) - check_disallowed_columns(libImportOncokb.get_first_line_cells(libImportOncokb.open_file(mutation_file_path), '\t')) - - global portal_instance - if hasattr(args, 'portal_info_dir') and args.portal_info_dir is not None: - portal_instance = validateData.load_portal_info(args.portal_info_dir, logger, - offline=True) - else: - portal_instance = validateData.load_portal_info(server_url, logger) - - row_number_to_mutation_event = get_features(mutation_file_path, server_url, portal_instance.alias_entrez_map) - row_number_to_annotation = fetch_and_map_oncokb_annotations(row_number_to_mutation_event) - write_annotations_to_file(row_number_to_annotation, mutation_file_path) - - logger.info('Import complete') - - return exit_status_handler.get_exit_status() - -def check_disallowed_columns(header_elements): - disallowed_columns = [] - for disallowed_column in disallowed_mutation_columns: - if disallowed_column in header_elements: - disallowed_columns.append(disallowed_column) - if len(disallowed_columns) > 0: - raise RuntimeError("One or more disallowed columns for OncoKB import are present in the MAF file. " \ - "Disallowed column(s): [" + ", ".join(disallowed_columns) + "]") - - -def get_features(mutation_file_path, server_url=None, alias_map=None): - """Extract Mutation events from MAF data file.""" - assert server_url or alias_map, 'At least one of "server_url" or "alias_map" must be specified' - - header_elements = libImportOncokb.get_first_line_cells(libImportOncokb.open_file(mutation_file_path), '\t') - header_indexes = {} - for required_column in required_mutation_columns + [FIELD_ENTREZ_ID]: - header_indexes[required_column] = header_elements.index(required_column) - row_number_to_feature = {} - row_counter = 0 - mutation_file = libImportOncokb.open_file(mutation_file_path) - - # reduce API requests - resolved_aliases = {} - - print("Reading features from file ...", end = '') - for line in mutation_file: - row_counter += 1 - if line == '\n' or line.startswith('#') or line.startswith(header_elements[0]): - continue # skip comment and header line - line_elements = line.rstrip('\n').split('\t') - feature = {} - for column_name, index in header_indexes.items(): - value = line_elements[index] - if value != '': - if column_name == FIELD_PROTEIN_CHANGE: - value = value.replace('p.', '') - feature[column_name] = value - elif column_name != FIELD_ENTREZ_ID and column_name != FIELD_PROTEIN_POSITION and column_name != FIELD_PROTEIN_CHANGE: - raise RuntimeError("Empty value encountered in column '" + - column_name + "' in row " + str(row_counter) + "." \ - "OncoKB annotations cannot be imported. Please fix and rerun.") - - # skip lines that have empty protein change column - if FIELD_PROTEIN_CHANGE not in feature: - continue - - # resolve gene symbols to Entrez Ids if needed - if FIELD_ENTREZ_ID in feature and feature[FIELD_ENTREZ_ID] is not None and feature[FIELD_ENTREZ_ID] != '': - entrez_gene_ids = [feature[FIELD_ENTREZ_ID]] - else: - # in case of failure, try aliases - entrez_gene_ids = portal_instance.hugo_entrez_map.get( - feature[FIELD_HUGO_SYMBOL], - resolved_aliases.get(feature[FIELD_HUGO_SYMBOL]) - ) or libImportOncokb.try_get_entrez_from_alias(feature[FIELD_HUGO_SYMBOL], server_url, alias_map) - resolved_aliases[feature[FIELD_HUGO_SYMBOL]] = entrez_gene_ids - - if len(entrez_gene_ids) > 1: - logger.error(""" Multiple Entrez gene ids were found for a gene. - OncoKB annotations will not be imported for this gene. - Please fix and rerun. """, - extra={'symbol': feature[FIELD_HUGO_SYMBOL], 'row': str(row_counter)}) - feature[FIELD_ENTREZ_ID] = None - elif len(entrez_gene_ids) == 0: - logger.error(""" Could not find the Entrez gene id for a gene. - OncoKB annotations will not be imported for this gene. - Please fix and rerun. """, - extra={'symbol': feature[FIELD_HUGO_SYMBOL], 'row': str(row_counter)}) - feature[FIELD_ENTREZ_ID] = None - else: - feature[FIELD_ENTREZ_ID] = str(entrez_gene_ids[0]) - feature[INTERNAL_ID] = "_".join( - [feature[FIELD_ENTREZ_ID], feature[FIELD_PROTEIN_CHANGE], feature[FIELD_VARIANT_CLASS]]) - - row_number_to_feature[row_counter] = feature - mutation_file.close() - print(" DONE") - return row_number_to_feature - - -def fetch_and_map_oncokb_annotations(row_number_to_feature): - """Submit mutation events to OncoKB.org and return OncoKB annotations.""" - id_to_rownumber = {} - for row_number, feature in row_number_to_feature.items(): - id_to_rownumber[feature[INTERNAL_ID]] = row_number - payload_list = create_request_payload(row_number_to_feature) - annotations = libImportOncokb.fetch_oncokb_annotations(payload_list, libImportOncokb.DEFAULT_ONCOKB_URL + "/annotate/mutations/byProteinChange") - row_number_to_annotation = {} - id_to_annotation = {annotation[ONCOKB_QUERY][ONCOKB_ID]: annotation for annotation in annotations} - for row_number, feature in row_number_to_feature.items(): - if feature[INTERNAL_ID] in id_to_annotation: - row_number_to_annotation[row_number] = id_to_annotation[feature[INTERNAL_ID]] - return row_number_to_annotation - - -def create_request_payload(row_number_to_feature): - """Translate mutation events into JSON for message body.""" - elements = {} - for row_number, feature in row_number_to_feature.items(): - protein_position = feature[FIELD_PROTEIN_POSITION] if FIELD_PROTEIN_POSITION in feature and feature[ - FIELD_PROTEIN_POSITION] != 'NA' else None - protein_change = feature[FIELD_PROTEIN_CHANGE] if FIELD_PROTEIN_CHANGE in feature and feature[FIELD_PROTEIN_CHANGE] != 'NA' else None - proteinStart = libImportOncokb.get_protein_pos_start(protein_position, protein_change) - proteinEnd = libImportOncokb.get_protein_pos_end(protein_position, protein_change) - if proteinEnd == -1: - proteinEnd = proteinStart - if proteinStart != -1: - elements[feature[ - INTERNAL_ID]] = '{ "alteration":"%s", "consequence":"%s", "gene":{"entrezGeneId":%s}, "id":"%s", "proteinStart":%s, "proteinEnd":%s, "tumorType":null} ' \ - % (feature[FIELD_PROTEIN_CHANGE], feature[FIELD_VARIANT_CLASS], feature[FIELD_ENTREZ_ID], - feature[INTERNAL_ID], proteinStart, proteinEnd) - else: - elements[feature[ - INTERNAL_ID]] = '{ "alteration":"%s", "consequence":"%s", "gene":{"entrezGeneId":%s}, "id":"%s", "tumorType":null} ' \ - % (feature[FIELD_PROTEIN_CHANGE], feature[FIELD_VARIANT_CLASS], feature[FIELD_ENTREZ_ID], - feature[INTERNAL_ID]) - - # normalize for alteration id since same alteration is represented in multiple samples - return list(elements.values()) - - -def write_annotations_to_file(row_number_to_annotation, mutations_file_path): - """Add pd annotation columns and data fields to MAF file.""" - meta_cna_file_name = os.path.basename(mutations_file_path) - dir = os.path.dirname(mutations_file_path) - backup_file_name = 'ONCOKB_IMPORT_BACKUP_' + meta_cna_file_name - backup_file_path = os.path.join(dir, backup_file_name) - print("Updating study files ...", end = '') - try: - new_file = open(mutations_file_path + '_temp', "x") - header_updated = False - row_counter = 0 - mutations_file = libImportOncokb.open_file(mutations_file_path) - for line in mutations_file: - row_counter += 1 - if not line.startswith('#'): - if not header_updated: - line = line.rstrip( - '\n') + '\tcbp_driver\tcbp_driver_annotation\tcbp_driver_tiers\tcbp_driver_tiers_annotation\n' # add custom driver columns to header - header_updated = True - else: - if row_counter in row_number_to_annotation: - oncokb_annotation = row_number_to_annotation[row_counter][ONCOGENIC] - line = line.rstrip('\n') + libImportOncokb.get_annotation_cells(oncokb_annotation) - else: - line = line.rstrip('\n') + '\t\t\t\t\n' - new_file.write(line) - except FileExistsError: - raise FileExistsError("""Backup MAF file that does not contain OncoKB annotations does already exist. - Please remove file '""" + backup_file_name + "' and try again.") - finally: - mutations_file.close() - new_file.close() - os.rename(mutations_file_path, backup_file_path) - os.rename(mutations_file_path + '_temp', mutations_file_path) - print(" DONE") - return - - -if __name__ == '__main__': - try: - parsed_args = libImportOncokb.interface() - exit_status = main_import(parsed_args) - finally: - logging.shutdown() - del logging._handlerList[:] # workaround for harmless exceptions on exit - print(('Import of OncoKB annotations for mutations {status}.'.format( - status={0: 'succeeded', - 1: 'failed', - 2: 'not performed as problems occurred', - 3: 'succeeded with warnings'}.get(exit_status, 'unknown'))), file=sys.stderr) - sys.exit(exit_status) diff --git a/core/src/main/scripts/importer/libImportOncokb.py b/core/src/main/scripts/importer/libImportOncokb.py deleted file mode 100644 index 97a2c506913..00000000000 --- a/core/src/main/scripts/importer/libImportOncokb.py +++ /dev/null @@ -1,295 +0,0 @@ -#!/usr/bin/env python3 - -# -# Copyright (c) 2020 The Hyve B.V. -# This code is licensed under the GNU Affero General Public License (AGPL), -# version 3, or (at your option) any later version. -# - -# -# This file is part of cBioPortal. -# -# cBioPortal is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as -# published by the Free Software Foundation, either version 3 of the -# License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . -# - -"""OncoKB annotation import script. - -Run with the command line option --help for usage information. -""" - -import re -import os -import requests -import json -import argparse - -BATCH_SIZE = 200 -DEFAULT_ONCOKB_URL = "https://public.api.oncokb.org/api/v1" -ONCOKB_JSON_QUERY_FIELD = 'query' -ONCOKB_JSON_ID_FIELD = 'id' -ONCOKB_JSON_ONCOGENIC_FIELD = 'oncogenic' - -def load_portal_genes(server_url): - parsed_json = request_from_portal_api(server_url, "genes", logging.getLogger(__name__)) - return transform_symbol_entrez_map(parsed_json, 'hugoGeneSymbol') - - -def try_get_entrez_from_alias(alias, server_url=None, alias_map=None): - assert server_url or alias_map - - if server_url: - response = requests.get(f'{server_url}/api/genes?alias={alias}').json() - entrez = [gene['entrezGeneId'] for gene in response] - elif alias_map: - entrez = alias_map.get(alias, []) - - return entrez - - -# after: getProteinStart() in ExtendedMutationUtil.java -def get_protein_pos_start(protein_position, protein_change): - start = -1 - if protein_position is not None: - start_end = protein_position.split('/')[0].split('-') - if len(start_end) > 0: - start = start_end[0] - if start == -1 and protein_change is not None: - start_stop = annotate_protein_change(protein_change) - start = str(start_stop['start']) - return start - - -# after: getProteinPosEnd() in ExtendedMutationUtil.java -def get_protein_pos_end(protein_position, protein_change): - end = -1 - if protein_position is not None: - start_end = protein_position.split('/')[0].split('-') - if len(start_end) > 1: - end = start_end[1] - if end == -1 and protein_change is not None: - start_stop = annotate_protein_change(protein_change) - end = str(start_stop['stop']) - return end - - -# after: annotateProteinChange() in ExtendedMutationUtil.java -def annotate_protein_change(protein_change): - start = -1 - end = -1 - match = re.findall(r'^([A-Z\*]+)([0-9]+)([A-Z\*\?]*)$', protein_change) - if len(match) > 0: - ref = match[0][0] - var = match[0][2] - refL = len(ref) - start = int(match[0][1]) - if ref == var or ref == '*' or var == '*' or start == 1 or var == '?': - end = start - else: - end = start + refL - 1 - else: - match = re.findall(r'[A-Z]?([0-9]+)(_[A-Z]?([0-9]+))?(delins|ins)([A-Z]+)', protein_change) - if len(match) > 0: - start = int(match[0][0]) - if match[0][2] is not None and match[0][2] != '': - end = int(match[0][2]) - else: - end = start - else: - match = re.findall(r'[A-Z]?([0-9]+)(_[A-Z]?([0-9]+))?(_)?splice', protein_change) - if len(match) > 0: - start = int(match[0][0]) - if match[0][2] is not None and match[0][2] != '': - end = int(match[0][2]) - else: - end = start - else: - match = re.findall(r'[A-Z]?([0-9]+)_[A-Z]?([0-9]+)(.+)', protein_change) - if len(match) > 0: - start = int(match[0][0]) - end = int(match[0][1]) - else: - match = re.findall(r'([A-Z\*])([0-9]+)[A-Z]?fs.*', protein_change) - if len(match) > 0: - start = int(match[0][1]) - end = start - else: - match = re.findall(r'([A-Z]+)?([0-9]+)((ins)|(del)|(dup))', protein_change) - if len(match) > 0: - start = int(match[0][1]) - end = start - return {"start": start, "stop": end} - - -def evaluate_driver_passenger(oncogenic): - """Translate the OncoKB 'oncogenic' value to Putative_Driver' or Putative_Passenger'""" - custom_annotation = 'Putative_Passenger' - if oncogenic.lower() in ['oncogenic', 'likely oncogenic', 'predicted oncogenic']: - custom_annotation = 'Putative_Driver' - return custom_annotation - - -def get_first_line(file_handle): - """Read the first line of a file ignoring comment lines.""" - while True: - first_line = file_handle.readline() - if not first_line.startswith('#'): - file_handle.close() - return first_line.rstrip('\n') - -def get_first_line_cells(file_handle, separator = '\t'): - return get_first_line(file_handle).split(separator); - -def find_meta_file_by_fields(study_dir, field_dict): - """In the study directory find the meta file that holds specified field values.""" - filenames = os.listdir(study_dir) - meta_files = [ file for file in filenames if file.startswith('meta_')] - meta_files = [ study_dir + "/" + file for file in meta_files ] - for meta_file in meta_files: - fields = read_meta_file(meta_file) - match_found = True - for field_name, field_value in field_dict.items(): - if field_name not in fields or fields[field_name] != field_value: - match_found = False - if match_found: - return os.path.join(study_dir, meta_file) - return None - - -def find_data_file_from_meta_file(metafile_path): - """From specified meta file return the value of the 'data_filename' field.""" - fields = read_meta_file(metafile_path) - return fields['data_filename'] - - -def read_meta_file(metafile_path): - """Read fields of specified meta into a dict.""" - fields = {} - with open(metafile_path) as metafile: - for line in metafile: - if line == '\n': - continue - match = re.findall(r'\s*(\S+)\s*:\s*(\S+)', line)[0] - fields[match[0]] = match[1] - return fields - -def get_oncokb_curated_genes(): - """Do a call to OncoKB to retrieve the Curated Gene List. """ - request_url = DEFAULT_ONCOKB_URL + "/utils/allCuratedGenes" - request = requests.get(url=request_url) - - if request.ok: - return request.json() - else: - if request.status_code == 404: - raise ConnectionError( - "An error occurred when trying to connect to OncoKB for retrieving of mutation annotations.") - else: - request.raise_for_status() - -def get_annotated_oncokb_curated_genes_by_entrezId(): - """ Get a list with the Entrez Gene IDs of the OncoKB Curated Gene List, only the genes that have - annotations. """ - curated_genes = get_oncokb_curated_genes() - entrez_ids = [] - for gene in curated_genes: - entrez_ids += [gene["entrezGeneId"]] - return entrez_ids - -def filter_payload(payload_list, sv): - """ Remove the genes that are not an OncoKB Curated Gene List from the payload. """ - curated_genes = get_annotated_oncokb_curated_genes_by_entrezId() - filtered_payload = [] - for element in payload_list: - parsed_element = json.loads(element) - if sv: - if parsed_element["geneA"]["entrezGeneId"] in curated_genes and parsed_element["geneB"]["entrezGeneId"] in curated_genes: - filtered_payload += [element] - else: - if parsed_element["gene"]["entrezGeneId"] in curated_genes: - filtered_payload += [element] - return filtered_payload - -def fetch_oncokb_annotations(payload_list, request_url, sv=False): - """Submit alterations to OncoKB.org and return OncoKB annotations.""" - annotations = [] - request_headers = {'Content-Type': 'application/json', 'Accept': 'application/json'} - filtered_payload = filter_payload(payload_list, sv) - payload_batches = partition_list(filtered_payload, BATCH_SIZE) - for payload_batch in payload_batches: - payload = '['+ ', '.join(payload_batch) + ']' - print("Fetching batch of " + str(len(payload_batch)) + " annotations ...", end = '') - request = requests.post(url=request_url, headers=request_headers, data=payload) - if request.ok: - print(" DONE") - # Parse transcripts and exons from JSON - result_json = request.json() - annotations = annotations + result_json - else: - if request.status_code == 404: - print( - Color.RED + 'An error occurred when trying to connect to OncoKB for retrieving of mutation annotations' + Color.END, - file=sys.stderr) - sys.exit(1) - else: - request.raise_for_status() - return annotations - -def partition_list(list, n): - """Yield successive n-sized chunks from list.""" - for i in range(0, len(list), n): - yield list[i:i + n] - - -def check_required_columns(header_elements, required_columns): - missing_columns = [] - for required_column in required_columns: - if not required_column in header_elements: - missing_columns.append(required_column) - if len(missing_columns) > 0: - raise RuntimeError("One or more required columns for OncoKB import are missing in the input file. " \ - "Missing column(s): [" + ", ".join(missing_columns) + "]") - -def open_file(file_name): - """Open file and handle exception when not found.""" - try: - file = open(file_name) - except FileNotFoundError: - raise FilenotFoundError("Could not open file at path '" + file_name + "'") - return file - - -def interface(): - parser = argparse.ArgumentParser(description='cBioPortal OncoKB annotation importer') - parser.add_argument('-u', '--url_server', - type=str, - default='http://localhost:8080', - help='URL to cBioPortal server. You can ' - 'set this if your URL is not ' - 'http://localhost:8080') - parser.add_argument('-m', '--study_directory', type=str, required=True, - help='path to study directory.') - parser.add_argument('-p', '--portal-info-dir', help='Specify a directory of database export JSON files for validation.' - 'genes.json is used to resolved gene symbols/IDs') - parser = parser.parse_args() - return parser - -def get_annotation_cells(oncokb_annotation): - oncogenicity = evaluate_driver_passenger(oncokb_annotation) - driver_field_annotation = '' - tier_field_annotation = '' - if oncogenicity != '': - driver_field_annotation = 'Annotation imported from OncoKB.org' - if oncokb_annotation != '': - tier_field_annotation = 'Annotation imported from OncoKB.org' - return '\t%s\t%s\t%s\t%s\n' % (oncogenicity, driver_field_annotation, oncokb_annotation, tier_field_annotation) diff --git a/core/src/main/scripts/importer/metaImport.py b/core/src/main/scripts/importer/metaImport.py deleted file mode 100755 index f8262a5958d..00000000000 --- a/core/src/main/scripts/importer/metaImport.py +++ /dev/null @@ -1,219 +0,0 @@ -#!/usr/bin/env python3 - -__author__ = 'priti' - -# ---------------------------------------------------------------------------- -# Import -# ---------------------------------------------------------------------------- - - -import sys -import os -import importlib -import argparse -import logging -from pathlib import Path - -# configure relative imports if running as a script; see PEP 366 -# it might passed as empty string by certain tooling to mark a top level module -if __name__ == "__main__" and (__package__ is None or __package__ == ''): - # replace the script's location in the Python search path by the main - # scripts/ folder, above it, so that the importer package folder is in - # scope and *not* directly in sys.path; see PEP 395 - sys.path[0] = str(Path(sys.path[0]).resolve().parent) - __package__ = 'importer' - # explicitly import the package, which is needed on CPython 3.4 because it - # doesn't include https://github.com/python/cpython/pull/2639 - importlib.import_module(__package__) - -from . import validateData -from . import cbioportalImporter -from . import importOncokbMutation -from . import importOncokbDiscreteCNA -from . import libImportOncokb - - -# ---------------------------------------------------------------------------- -# Global variables -# ---------------------------------------------------------------------------- - -class Color(object): - PURPLE = '\033[95m' - CYAN = '\033[96m' - DARKCYAN = '\033[36m' - BLUE = '\033[94m' - GREEN = '\033[92m' - YELLOW = '\033[93m' - RED = '\033[91m' - BOLD = '\033[1m' - UNDERLINE = '\033[4m' - END = '\033[0m' - - -# ---------------------------------------------------------------------------- -# Functions -# ---------------------------------------------------------------------------- - -def interface(): - parser = argparse.ArgumentParser(description='cBioPortal meta Importer') - parser.add_argument('-s', '--study_directory', type=str, required=True, - help='path to directory.') - portal_mode_group = parser.add_mutually_exclusive_group() - portal_mode_group.add_argument('-u', '--url_server', - type=str, - default='http://localhost/cbioportal', - help='URL to cBioPortal server. You can ' - 'set this if your URL is not ' - 'http://localhost/cbioportal') - portal_mode_group.add_argument('-p', '--portal_info_dir', - type=str, - help='Path to a directory of cBioPortal ' - 'info files to be used instead of ' - 'contacting the web API') - # temporary workaround to simplify import process when no web-server is running. TODO: replace by solution for #1466 - portal_mode_group.add_argument('-n', '--no_portal_checks', default=False, - action='store_true', - help='Skip tests requiring information ' - 'from the cBioPortal installation') - parser.add_argument('-jar', '--jar_path', type=str, required=False, - help=( - 'Path to scripts JAR file (default: locate it ' - 'relative to the import script)')) - parser.add_argument('-html', '--html_table', type=str, - help='path to html report') - parser.add_argument('-v', '--verbose', action='store_true', - help='report status info messages while validating') - parser.add_argument('-o', '--override_warning', action='store_true', - help='override warnings and continue importing') - parser.add_argument('-r', '--relaxed_clinical_definitions', required=False, - action='store_true', default=False, - help='Option to enable relaxed mode for validator when ' - 'validating clinical data without header definitions') - parser.add_argument('-m', '--strict_maf_checks', required=False, - action='store_true', default=False, - help='Option to enable strict mode for validator when ' - 'validating mutation data') - parser.add_argument('-update', '--update_generic_assay_entity', type=str, required=False, default="False", - help='Set as True to update the existing generic assay entities, set as False to keep the existing generic assay entities for generic assay') - parser.add_argument('-oncokb', '--import_oncokb', action='store_true', - help='Set as True to download OncoKB annotations for Mutations and CNA and load as custom driver annotations') - parser.add_argument('-skipimport', '--skip_db_import', action='store_true', - help='Perform validation and OncoKB download but do not import study into database.') - parser = parser.parse_args() - return parser - - -# ---------------------------------------------------------------------------- -# Main -# ---------------------------------------------------------------------------- - -if __name__ == '__main__': - # Parse user input - args = interface() - # supply parameters that the validation script expects to have parsed - args.error_file = False - - study_dir = args.study_directory - - # Validate the study directory. - print("Starting validation...\n", file=sys.stderr) - try: - exitcode = validateData.main_validate(args) - except KeyboardInterrupt: - print(Color.BOLD + "\nProcess interrupted. " + Color.END, file=sys.stderr) - print("#" * 71 + "\n", file=sys.stderr) - raise - except: - print("!" * 71, file=sys.stderr) - print(Color.RED + "Error occurred during validation step:" + Color.END, file=sys.stderr) - raise - finally: - # make sure all log messages are flushed - validator_logger = logging.getLogger(validateData.__name__) - for log_handler in validator_logger.handlers: - log_handler.close() - validator_logger.handlers = [] - - # Import OncoKB annotations when asked, and there are no validation warnings or warnings are overruled - study_is_valid = exitcode == 0 or (exitcode == 3 and args.override_warning) - if study_is_valid and args.import_oncokb: - mutation_meta_file_path = libImportOncokb.find_meta_file_by_fields(study_dir, {'genetic_alteration_type': 'MUTATION_EXTENDED'}) - mutation_data_file_name = libImportOncokb.find_data_file_from_meta_file(mutation_meta_file_path) - mutation_data_file_path = os.path.join(study_dir, mutation_data_file_name) - study_is_modified = False - print("\n") - if os.path.exists(mutation_data_file_path): - print("Starting import of OncoKB annotations for mutations file ...\n", file=sys.stderr) - try: - exitcode = importOncokbMutation.main_import(args) - study_is_modified = True - except KeyboardInterrupt: - print(Color.BOLD + "\nProcess interrupted. " + Color.END, file=sys.stderr) - print("#" * 71 + "\n", file=sys.stderr) - raise - except: - print("!" * 71, file=sys.stderr) - print(Color.RED + "Error occurred during import of OncoKB for mutations file:" + Color.END, file=sys.stderr) - raise - finally: - # make sure all log messages are flushed - validator_logger = logging.getLogger(importOncokbMutation.__name__) - for log_handler in validator_logger.handlers: - log_handler.close() - validator_logger.handlers = [] - cna_meta_file_path = libImportOncokb.find_meta_file_by_fields(study_dir, {'genetic_alteration_type': 'COPY_NUMBER_ALTERATION', 'datatype': 'DISCRETE'}) - cna_data_file_name = libImportOncokb.find_data_file_from_meta_file(cna_meta_file_path) - cna_data_file_path = os.path.join(study_dir, cna_data_file_name) - if os.path.exists(cna_data_file_path): - print("Starting import of OncoKB annotations for discrete CNA file ...\n", file=sys.stderr) - try: - exitcode = importOncokbDiscreteCNA.main_import(args) - study_is_modified = True - except KeyboardInterrupt: - print(Color.BOLD + "\nProcess interrupted. " + Color.END, file=sys.stderr) - print("#" * 71 + "\n", file=sys.stderr) - raise - except: - print("!" * 71, file=sys.stderr) - print(Color.RED + "Error occurred during import of OncoKB for discrete CNA file:" + Color.END, file=sys.stderr) - raise - finally: - # make sure all log messages are flushed - validator_logger = logging.getLogger(importOncokbDiscreteCNA.__name__) - for log_handler in validator_logger.handlers: - log_handler.close() - validator_logger.handlers = [] - # Revalidate when custom annotations were added - if study_is_modified: - print("Starting re-validation of study with OncoKB annotations ...\n", file=sys.stderr) - exitcode = validateData.main_validate(args) - - # Depending on validation results, load the study or notify the user - try: - print("\n") - print("#" * 71, file=sys.stderr) - if exitcode == 1: - print(Color.RED + "One or more errors reported above. Please fix your files accordingly" + Color.END, file=sys.stderr) - print("!" * 71, file=sys.stderr) - elif exitcode == 3: - if args.override_warning and not args.skip_db_import: - print(Color.BOLD + "Overriding Warnings. Importing study now" + Color.END, file=sys.stderr) - print("#" * 71 + "\n", file=sys.stderr) - cbioportalImporter.main(args) - exitcode = 0 - else: - print(Color.BOLD + "Warnings. Please fix your files or import with override warning option" + Color.END, file=sys.stderr) - print("#" * 71, file=sys.stderr) - elif exitcode == 0 and not args.skip_db_import: - print(Color.BOLD + "Everything looks good. Importing study now" + Color.END, file=sys.stderr) - print("#" * 71 + "\n", file=sys.stderr) - cbioportalImporter.main(args) - except KeyboardInterrupt: - print(Color.BOLD + "\nProcess interrupted. You will have to run this again to make sure study is completely loaded." + Color.END, file=sys.stderr) - print("#" * 71, file=sys.stderr) - raise - except: - print("!" * 71, file=sys.stderr) - print(Color.RED + "Error occurred during data loading step. Please fix the problem and run this again to make sure study is completely loaded." + Color.END, file=sys.stderr) - raise - sys.exit(exitcode) diff --git a/core/src/main/scripts/importer/updateOncokbAnnotations.py b/core/src/main/scripts/importer/updateOncokbAnnotations.py deleted file mode 100644 index df7799387ca..00000000000 --- a/core/src/main/scripts/importer/updateOncokbAnnotations.py +++ /dev/null @@ -1,289 +0,0 @@ -#!/usr/bin/env python3 - -# -# Copyright (c) 2020 The Hyve B.V. -# This code is licensed under the GNU Affero General Public License (AGPL), -# version 3, or (at your option) any later version. -# - -# -# This file is part of cBioPortal. -# -# cBioPortal is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as -# published by the Free Software Foundation, either version 3 of the -# License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . -# - -"""Script to update OncoKB annotation for the provided study. -""" - -import argparse -import importlib -import logging.handlers -import sys -import MySQLdb -from pathlib import Path -from cbioportal_common import get_database_properties, get_db_cursor -import libImportOncokb - - -# configure relative imports if running as a script; see PEP 366 -# it might passed as empty string by certain tooling to mark a top level module -if __name__ == "__main__" and (__package__ is None or __package__ == ''): - # replace the script's location in the Python search path by the main - # scripts/ folder, above it, so that the importer package folder is in - # scope and *not* directly in sys.path; see PEP 395 - sys.path[0] = str(Path(sys.path[0]).resolve().parent) - __package__ = 'importer' - # explicitly import the package, which is needed on CPython 3.4 because it - # doesn't include https://github.com/python/cpython/pull/2639 - importlib.import_module(__package__) - - -ERROR_FILE = sys.stderr -REFERENCE_GENOME = {'hg19': 'GRCh37', 'hg38': 'GRCh38'} - -# from: cbioportal-frontend file CopyNumberUtils.ts -cna_alteration_types = { - "DELETION": -2, - "LOSS": -1, - "GAIN": 1, - "AMPLIFICATION": 2, -} - -def get_current_mutation_data(study_id, cursor): - """ Get mutation data from the current study. - Returns an array of dictionaries, with the following keys: - id, geneticProfileId, entrezGeneId, alteration, and consequence - """ - mutations = [] - try: - cursor.execute('SELECT genetic_profile.GENETIC_PROFILE_ID, mutation_event.ENTREZ_GENE_ID, PROTEIN_CHANGE as ALTERATION, ' + - 'MUTATION_TYPE as CONSEQUENCE, mutation.MUTATION_EVENT_ID, mutation.SAMPLE_ID FROM cbioportal.mutation_event ' + - 'inner join mutation on mutation.MUTATION_EVENT_ID = mutation_event.MUTATION_EVENT_ID ' + - 'inner join genetic_profile on genetic_profile.GENETIC_PROFILE_ID = mutation.GENETIC_PROFILE_ID ' + - 'inner join cancer_study on cancer_study.CANCER_STUDY_ID = genetic_profile.CANCER_STUDY_ID ' + - 'WHERE cancer_study.CANCER_STUDY_IDENTIFIER = "'+study_id +'"') - for row in cursor.fetchall(): - mutations += [{ "id": "_".join([str(row[4]), str(row[0]), str(row[5])]), "geneticProfileId": row[0], "entrezGeneId": row[1], - "alteration": row[2], "consequence": row[3]}] - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - return None - return mutations - -def get_current_cna_data(study_id, cursor): - """ Get cna data from the current study. - Returns an array of dictionaries, with the following keys: - id, geneticProfileId, entrezGeneId, and alteration - """ - cna = [] - try: - cursor.execute('SELECT genetic_profile.GENETIC_PROFILE_ID, '+ 'cna_event.ENTREZ_GENE_ID, cna_event.ALTERATION, '+ - 'sample_cna_event.CNA_EVENT_ID, sample_cna_event.SAMPLE_ID from cbioportal.cna_event ' + - 'inner join sample_cna_event on sample_cna_event.CNA_EVENT_ID = cna_event.CNA_EVENT_ID '+ - 'inner join genetic_profile on genetic_profile.GENETIC_PROFILE_ID = sample_cna_event.GENETIC_PROFILE_ID '+ - 'inner join cancer_study on cancer_study.CANCER_STUDY_ID = genetic_profile.CANCER_STUDY_ID '+ - 'WHERE cancer_study.CANCER_STUDY_IDENTIFIER = "'+study_id +'"') - for row in cursor.fetchall(): - alteration = list(cna_alteration_types.keys())[ - list(cna_alteration_types.values()).index(row[2])] - cna += [{"id": "_".join([str(row[3]), str(row[0]), str(row[4])]), "geneticProfileId": row[0], "entrezGeneId": row[1], - "alteration": alteration}] - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - return None - return cna - -def get_current_sv_data(study_id, cursor): - """ Get structural variant data from the current study. - Returns an array of dictionaries, with the following keys: - id, geneticProfileId, entrezGeneIdA, entrezGeneIdB, and structuralVariantType - """ - sv = [] - try: - cursor.execute('SELECT genetic_profile.GENETIC_PROFILE_ID, '+ 'structural_variant.SITE1_ENTREZ_GENE_ID, '+ - 'structural_variant.SITE2_ENTREZ_GENE_ID, structural_variant.EVENT_INFO, ' + - 'structural_variant.INTERNAL_ID, structural_variant.SAMPLE_ID from cbioportal.structural_variant ' + - 'inner join genetic_profile on genetic_profile.GENETIC_PROFILE_ID = structural_variant.GENETIC_PROFILE_ID '+ - 'inner join cancer_study on cancer_study.CANCER_STUDY_ID = genetic_profile.CANCER_STUDY_ID '+ - 'WHERE cancer_study.CANCER_STUDY_IDENTIFIER = "'+study_id +'"') - for row in cursor.fetchall(): - sv += [{"id": "_".join([str(row[4]), str(row[0]), str(row[5])]), "geneticProfileId": row[0], "entrezGeneIdA": row[1], - "entrezGeneIdB": row[2], "structuralVariantType": row[3]}] - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - return None - return sv - -def get_reference_genome(study_id, cursor): - """ Get reference genome from the study """ - ref_genome = [] - try: - cursor.execute('SELECT reference_genome.NAME FROM reference_genome ' + - 'inner join cancer_study ON cancer_study.reference_genome_id = reference_genome.reference_genome_id ' + - 'WHERE cancer_study.CANCER_STUDY_IDENTIFIER = "'+study_id +'"') - for row in cursor.fetchall(): - ref_genome += [row[0]] - if len(ref_genome) == 1: - return REFERENCE_GENOME[ref_genome[0]] - else: - raise ValueError("There is an error when retrieving the reference genome, as multiple values have been retrieved: "+ref_genome) - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - -def fetch_oncokb_mutation_annotations(mutation_data, ref_genome): - request_url = libImportOncokb.DEFAULT_ONCOKB_URL + "/annotate/mutations/byProteinChange" - request_payload = create_mutation_request_payload(mutation_data, ref_genome) - result = libImportOncokb.fetch_oncokb_annotations(request_payload, request_url) - return result - -def create_mutation_request_payload(mutation_data, ref_genome): - elements = {} - for mutation in mutation_data: - elements[mutation["id"]] = '{"alteration": "' + mutation["alteration"] + '", "consequence": "'+mutation["consequence"] + \ - '", "gene": {"entrezGeneId": '+ str(mutation["entrezGeneId"]) +'}, "id": "'+mutation["id"] + \ - '", "referenceGenome": "'+ref_genome+'"}' - - return list(elements.values()) - -def fetch_oncokb_copy_number_annotations(copy_number_data, ref_genome): - request_url = libImportOncokb.DEFAULT_ONCOKB_URL + "/annotate/copyNumberAlterations" - request_payload = create_copy_number_request_payload(copy_number_data, ref_genome) - result = libImportOncokb.fetch_oncokb_annotations(request_payload, request_url) - return result - -def create_copy_number_request_payload(copy_number_data, ref_genome): - elements = {} - for copy_number in copy_number_data: - elements[copy_number["id"]] = '{"copyNameAlterationType":"'+ copy_number["alteration"]+'", "gene":{"entrezGeneId":'+str(copy_number["entrezGeneId"])+ \ - '}, "id":"'+copy_number["id"]+'", "referenceGenome": "'+ref_genome+'"}' - - return list(elements.values()) - -def fetch_oncokb_sv_annotations(sv_data, ref_genome): - request_url = libImportOncokb.DEFAULT_ONCOKB_URL + "/annotate/structuralVariants" - request_payload = create_sv_request_payload(sv_data, ref_genome) - result = libImportOncokb.fetch_oncokb_annotations(request_payload, request_url, sv=True) - return result - -def create_sv_request_payload(sv_data, ref_genome): - elements = {} - for sv in sv_data: - elements[sv["id"]] = '{"structuralVariantType":"'+ sv["structuralVariantType"].upper()+'", "geneA":{"entrezGeneId":'+str(sv["entrezGeneIdA"])+ \ - '}, "geneB":{"entrezGeneId":'+str(sv["entrezGeneIdB"])+'}, "id":"'+sv["id"]+'", "referenceGenome": "'+ref_genome+'"}' - - return list(elements.values()) - -def get_current_annotation_data(connection, cursor, study_id): - annotation_data = [] - try: - cursor.execute('SELECT ALTERATION_EVENT_ID, alteration_driver_annotation.GENETIC_PROFILE_ID, SAMPLE_ID, DRIVER_FILTER_ANNOTATION,' + - ' DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION FROM cbioportal.alteration_driver_annotation' + - ' INNER JOIN cbioportal.genetic_profile ON (genetic_profile.GENETIC_PROFILE_ID = alteration_driver_annotation.GENETIC_PROFILE_ID)' + - ' INNER JOIN cbioportal.cancer_study ON (cancer_study.CANCER_STUDY_ID = genetic_profile.CANCER_STUDY_ID)' + - ' WHERE cancer_study.CANCER_STUDY_IDENTIFIER = "'+study_id+'"') - for row in cursor.fetchall(): - annotation_data += ["_".join([str(row[0]), str(row[1]), str(row[2])])] - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - return annotation_data - -def update_annotations(result, connection, cursor, study_id): - current_annotation_data = get_current_annotation_data(connection, cursor, study_id) - #Go over all the entries retrieved and add them to the database - for entry in result: - parsed_id = entry["query"]["id"].split("_") - event_id = parsed_id[0] - genetic_profile_id = parsed_id[1] - sample_id = parsed_id[2] - oncogenic = libImportOncokb.evaluate_driver_passenger(entry["oncogenic"]) - if entry["query"]["id"] in current_annotation_data: - try: - cursor.execute('UPDATE cbioportal.alteration_driver_annotation'+ - ' SET DRIVER_FILTER = "' + oncogenic + '"' + - ' WHERE ALTERATION_EVENT_ID = ' + event_id + ' AND GENETIC_PROFILE_ID = '+ genetic_profile_id + - ' AND SAMPLE_ID = '+ sample_id) - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - else: - try: - cursor.execute('INSERT INTO cbioportal.alteration_driver_annotation'+ - ' VALUES (' + event_id + ', '+ genetic_profile_id + ', '+ sample_id + ', "'+ oncogenic + '", "", "", "")') - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - -def main_import(study_id, properties_filename): - - portal_properties = get_database_properties(properties_filename) - if portal_properties is None: - print('failure reading properties file (%s)' % properties_filename, file=ERROR_FILE) - sys.exit(1) - - # Connect to the database. - # TODO: must be a unique transaction - connection, cursor = get_db_cursor(portal_properties) - if cursor is None: - print('failure connecting to sql database', file=ERROR_FILE) - sys.exit(1) - - # Query DB to get mutation, cna and structural variant data of the study. - mutation_study_data = get_current_mutation_data(study_id, cursor) - cna_study_data = get_current_cna_data(study_id, cursor) - sv_study_data = get_current_sv_data(study_id, cursor) - - # Call OncoKB to get annotations for the mutation, cna and structural variant data retrieved. - ref_genome = get_reference_genome(study_id, cursor) - mutation_result = fetch_oncokb_mutation_annotations(mutation_study_data, ref_genome) - cna_result = fetch_oncokb_copy_number_annotations(cna_study_data, ref_genome) - sv_result = fetch_oncokb_sv_annotations(sv_study_data, ref_genome) - all_results = mutation_result + cna_result + sv_result - - # Query DB to update alteration_driver_annotation table data, one record at a time. - update_annotations(all_results, connection, cursor, study_id) - - # Commit changes to the database at once to ensure a unique transaction. - try: - connection.commit() - print('Update complete') - return 0 - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - connection.rollback() - return 1 - - -def interface(): - parser = argparse.ArgumentParser(description='cBioPortal OncoKB annotation updater') - parser.add_argument('-s', '--study_id', - type=str, - required=True, - help='Study Identifier') - parser.add_argument('-p', '--portal_properties', type=str, required=True, - help='portal.properties of cBioPortal') - parser = parser.parse_args() - return parser - - -if __name__ == '__main__': - try: - parsed_args = interface() - exit_status = main_import(parsed_args.study_id, parsed_args.portal_properties) - finally: - logging.shutdown() - del logging._handlerList[:] # workaround for harmless exceptions on exit - print(('Update of OncoKB annotations for mutations {status}.'.format( - status={0: 'succeeded', - 1: 'failed', - 2: 'not performed as problems occurred', - 3: 'succeeded with warnings'}.get(exit_status, 'unknown'))), file=sys.stderr) - sys.exit(exit_status) diff --git a/core/src/main/scripts/importer/validateData.py b/core/src/main/scripts/importer/validateData.py deleted file mode 100755 index f4339b9110e..00000000000 --- a/core/src/main/scripts/importer/validateData.py +++ /dev/null @@ -1,5683 +0,0 @@ -#!/usr/bin/env python3 - -# -# Copyright (c) 2016 The Hyve B.V. -# This code is licensed under the GNU Affero General Public License (AGPL), -# version 3, or (at your option) any later version. -# - -# -# This file is part of cBioPortal. -# -# cBioPortal is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as -# published by the Free Software Foundation, either version 3 of the -# License. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . -# - -"""Data validation script - validate files before import into portal. - -Run with the command line option --help for usage information. -""" - -# imports -import sys -import os -import importlib -import logging.handlers -from collections import OrderedDict, namedtuple -import argparse -import re -import csv -import itertools -import requests -import json -import yaml -import xml.etree.ElementTree as ET -from pathlib import Path -from base64 import urlsafe_b64encode -import math -from abc import ABCMeta, abstractmethod -from urllib.parse import urlparse - -# Configure relative imports if running as a script; see PEP 366 -# it might passed as empty string by certain tooling to mark a top level module. -if __name__ == "__main__" and (__package__ is None or __package__ == ''): - # replace the script's location in the Python search path by the main - # scripts/ folder, above it, so that the importer package folder is in - # scope and *not* directly in sys.path; see PEP 395 - sys.path[0] = str(Path(sys.path[0]).resolve().parent) - __package__ = 'importer' - # explicitly import the package, which is needed on CPython 3.4 because it - # doesn't include https://github.com/python/cpython/pull/2639 - importlib.import_module(__package__) - -from . import cbioportal_common - - -# ------------------------------------------------------------------------------ -# globals - -# study-specific globals -DEFINED_SAMPLE_IDS = None -DEFINED_SAMPLE_ATTRIBUTES = None -PATIENTS_WITH_SAMPLES = None -DEFINED_CANCER_TYPES = None -mutation_sample_ids = None -mutation_file_sample_ids = set() -sample_ids_panel_dict = {} - -# resource globals -RESOURCE_DEFINITION_DICTIONARY = {} -RESOURCE_PATIENTS_WITH_SAMPLES = None - -# globals required for gene set scoring validation -prior_validated_sample_ids = None -prior_validated_geneset_ids = None - -# Global variable to compare stable IDs from meta file with gene panel matrix file -study_meta_dictionary = {} - -# Global variable for the regex that checks hexadecimal colors -COLOR_REGEX = re.compile("^#[a-fA-F0-9]{6}$") - -# global character limit on sample stable ids -MAX_SAMPLE_STABLE_ID_LENGTH = 63 - -# ---------------------------------------------------------------------------- - -VALIDATOR_IDS = { - cbioportal_common.MetaFileTypes.CNA_DISCRETE: 'CNADiscreteValidator', - cbioportal_common.MetaFileTypes.CNA_DISCRETE_LONG: 'CNADiscreteLongValidator', - cbioportal_common.MetaFileTypes.CNA_LOG2:'CNAContinuousValuesValidator', - cbioportal_common.MetaFileTypes.CNA_CONTINUOUS:'CNAContinuousValuesValidator', - cbioportal_common.MetaFileTypes.EXPRESSION:'ContinuousValuesValidator', - cbioportal_common.MetaFileTypes.METHYLATION:'ContinuousValuesValidator', - cbioportal_common.MetaFileTypes.MUTATION:'MutationsExtendedValidator', - cbioportal_common.MetaFileTypes.MUTATION_UNCALLED:'MutationsExtendedValidator', - cbioportal_common.MetaFileTypes.CANCER_TYPE:'CancerTypeValidator', - cbioportal_common.MetaFileTypes.SAMPLE_ATTRIBUTES:'SampleClinicalValidator', - cbioportal_common.MetaFileTypes.PATIENT_ATTRIBUTES:'PatientClinicalValidator', - cbioportal_common.MetaFileTypes.SEG:'SegValidator', - cbioportal_common.MetaFileTypes.PROTEIN:'ProteinLevelValidator', - cbioportal_common.MetaFileTypes.GISTIC_GENES: 'GisticGenesValidator', - cbioportal_common.MetaFileTypes.TIMELINE:'TimelineValidator', - cbioportal_common.MetaFileTypes.MUTATION_SIGNIFICANCE:'MutationSignificanceValidator', - cbioportal_common.MetaFileTypes.GENE_PANEL_MATRIX:'GenePanelMatrixValidator', - cbioportal_common.MetaFileTypes.GSVA_SCORES:'GsvaScoreValidator', - cbioportal_common.MetaFileTypes.GSVA_PVALUES:'GsvaPvalueValidator', - cbioportal_common.MetaFileTypes.GENERIC_ASSAY_CONTINUOUS:'GenericAssayContinuousValidator', - cbioportal_common.MetaFileTypes.GENERIC_ASSAY_BINARY:'GenericAssayBinaryValidator', - cbioportal_common.MetaFileTypes.GENERIC_ASSAY_CATEGORICAL:'GenericAssayCategoricalValidator', - cbioportal_common.MetaFileTypes.STRUCTURAL_VARIANT:'StructuralVariantValidator', - cbioportal_common.MetaFileTypes.SAMPLE_RESOURCES:'SampleResourceValidator', - cbioportal_common.MetaFileTypes.PATIENT_RESOURCES:'PatientResourceValidator', - cbioportal_common.MetaFileTypes.STUDY_RESOURCES:'StudyResourceValidator', - cbioportal_common.MetaFileTypes.RESOURCES_DEFINITION:'ResourceDefinitionValidator', -} - - -# ---------------------------------------------------------------------------- -# class definitions - -class MaxLevelTrackingHandler(logging.Handler): - - """Handler that does nothing but track the maximum msg level emitted.""" - - def __init__(self): - """Initialize the handler with an attribute to track the level.""" - super(MaxLevelTrackingHandler, self).__init__() - self.max_level = logging.NOTSET - - def emit(self, record): - """Update the maximum level with a new record.""" - self.max_level = max(self.max_level, record.levelno) - - def get_exit_status(self): - """Return an exit status for the validator script based on max_level.""" - if self.max_level <= logging.INFO: - return 0 - elif self.max_level == logging.WARNING: - return 3 - elif self.max_level == logging.ERROR: - return 1 - else: - return 2 - -class LineCountHandler(logging.Handler): - - """Handler that does nothing but track the number of lines with error and warnings.""" - - def __init__(self): - """Initialize the handler with an attribute to track the lines.""" - super(LineCountHandler, self).__init__() - self.warning_lines = set() - self.error_lines = set() - - def emit(self, record): - """Update the line sets.""" - if hasattr(record, 'line_number'): - if record.levelno == logging.WARNING: - self.warning_lines.add(record.line_number) - if record.levelno == logging.ERROR: - self.error_lines.add(record.line_number) - - def get_nr_lines_with_error(self): - """Return the number of lines with an error.""" - return len(self.error_lines) - - def get_nr_lines_with_warning(self): - """Return the number of lines with an warning.""" - return len(self.warning_lines) - - def get_nr_lines_with_issue(self): - """Return the number of lines with an error or warning.""" - return len(self.error_lines | self.warning_lines) - - -class Jinja2HtmlHandler(logging.handlers.BufferingHandler): - - """Logging handler that formats aggregated HTML reports using Jinja2.""" - - def __init__(self, study_dir, output_filename, *args, **kwargs): - """Set study directory name, output filename and buffer size.""" - self.study_dir = study_dir - self.output_filename = output_filename - self.max_level = logging.NOTSET - self.closed = False - # get the directory name of the currently running script, - # resolving any symlinks - self.template_dir = os.path.dirname(os.path.realpath(__file__)) - super(Jinja2HtmlHandler, self).__init__(*args, **kwargs) - - def emit(self, record): - """Buffer a message if the buffer is not full.""" - self.max_level = max(self.max_level, record.levelno) - if len(self.buffer) < self.capacity: - return super(Jinja2HtmlHandler, self).emit(record) - - def flush(self): - """Do nothing; emit() caps the buffer and close() renders output.""" - pass - - def shouldFlush(self, record): - """Never flush; emit() caps the buffer and close() renders output.""" - return False - - def generateHtml(self, **kwargs): - """Render the HTML page for the current content in self.buffer - - **kwargs allows to override logger variables to display. - """ - # require Jinja2 only if it is actually used - import jinja2 - j_env = jinja2.Environment( - loader=jinja2.FileSystemLoader(self.template_dir), - # trim whitespace around Jinja2 operators - trim_blocks=True, - lstrip_blocks=True) - # register these functions to be used as filters in the template - def url_b64(unsafe_string): - """Encode a string as a base64 string with only id-safe chars.""" - encoded_bytes = unsafe_string.encode('utf8') - b64_bytes = urlsafe_b64encode(encoded_bytes) - return b64_bytes.decode('ascii').rstrip('=') - j_env.filters['url_b64'] = url_b64 - j_env.filters['os.path.relpath'] = os.path.relpath - template = j_env.get_template('validation_report_template.html.jinja') - doc = template.render( - study_dir=self.study_dir, - record_list=self.buffer, - max_level=logging.getLevelName(self.max_level), - **kwargs) - with open(self.output_filename, 'w') as f: - f.write(doc) - - -class ErrorFileFormatter(cbioportal_common.ValidationMessageFormatter): - - """Fasta-like formatter listing lines on which error messages occurred.""" - - def __init__(self, study_dir): - """Initialize a logging Formatter with an appropriate format string.""" - super(ErrorFileFormatter, self).__init__( - '>%(rel_filename)s | %(levelname)s: %(message)s\n%(line_string)s') - self.study_dir = study_dir - - def format(self, record): - """Aggregate line numbers to a line_string and format the record.""" - record.line_string = self.format_aggregated( - record, 'line_number', - single_fmt='%d', - multiple_fmt='%s', join_string=',', max_join=None, - optional=False) - record.rel_filename = os.path.relpath(record.filename_, - self.study_dir) - return super(ErrorFileFormatter, self).format(record) - - -class LineMessageFilter(logging.Filter): - """Filter that selects only validation messages about a line in a file.""" - def filter(self, record): - return int(hasattr(record, 'filename_') and - hasattr(record, 'line_number')) - - -class CombiningLoggerAdapter(logging.LoggerAdapter): - """LoggerAdapter that combines its own context info with that in calls.""" - def process(self, msg, kwargs): - """Add contextual information from call to that from LoggerAdapter.""" - extra = self.extra.copy() - if 'extra' in kwargs: - # add elements from the call, possibly overwriting - extra.update(kwargs['extra']) - kwargs["extra"] = extra - return msg, kwargs - - -class PortalInstance(object): - - """Represent a portal instance, storing the data needed for validation. - - This holds a number of dictionaries representing the particular - datatypes queried from the portal, each of which may be None - if the checks are to be skipped. - """ - - def __init__(self, portal_info_dict, cancer_type_dict, hugo_entrez_map, alias_entrez_map, gene_set_list, gene_panel_list, geneset_version, offline=False): - """Represent a portal instance with the given dictionaries.""" - self.portal_info_dict = portal_info_dict - self.cancer_type_dict = cancer_type_dict - self.hugo_entrez_map = hugo_entrez_map - self.alias_entrez_map = alias_entrez_map - self.gene_set_list = gene_set_list - self.gene_panel_list = gene_panel_list - self.geneset_version = geneset_version - self.entrez_set = set() - for entrez_map in (hugo_entrez_map, alias_entrez_map): - if entrez_map is not None: - for entrez_list in list(entrez_map.values()): - for entrez_id in entrez_list: - self.entrez_set.add(int(entrez_id)) - - #Set defaults for genome version and species - self.__species = 'human' - self.__ncbi_build = 'GRCh37' - self.__genome_name = 'hg19' - - # determine version, and the reason why it might be unknown - if portal_info_dict is None: - reason = 'offline instance' if offline else 'skipped checks' - self.portal_version = 'unknown -- ' + reason - else: - # if field is not present in dict, there was an error in the json - if 'portalVersion' not in portal_info_dict: - self.portal_version = 'unknown -- invalid JSON' - else: - self.portal_version = portal_info_dict['portalVersion'] - - @property - def species(self): - return self.__species - - @species.setter - def species(self, species): - self.__species = species - - @property - def reference_genome(self): - return self.__genome_name - - @reference_genome.setter - def reference_genome(self, genome_name): - self.__genome_name = genome_name - - @property - def ncbi_build(self): - return self.__ncbi_build - - @ncbi_build.setter - def ncbi_build(self, ncbi_build): - prefix = 'GRCm' if self.__species == 'mouse' else 'GRCh' - if str(ncbi_build) in ('37', '38'): - ncbi_build = prefix + str(ncbi_build) - self.__ncbi_build = ncbi_build - -class Validator(object): - - """Abstract validator class for tab-delimited data files. - - Subclassed by validators for specific data file types, which - should define a 'REQUIRED_HEADERS' attribute listing the required - column headers and a `REQUIRE_COLUMN_ORDER` boolean stating - whether their position is significant. Unless ALLOW_BLANKS is - set to True, empty cells in lines below the column header will - be reported as errors. An optional 'UNIQUE_COLUMNS' array can be - specified with names of columns that are checked for uniqueness - of cell contents. - - - The methods `processTopLines`, `checkHeader`, `checkLine` and `onComplete` - may be overridden (calling their superclass methods) to perform any - appropriate validation tasks. The superclass `checkHeader` method sets - self.cols to the list of column names found in the header of the file - and self.numCols to the number of columns. - """ - - REQUIRED_HEADERS = [] - UNIQUE_COLUMNS = [] - REQUIRE_COLUMN_ORDER = True - ALLOW_BLANKS = False - - def __init__(self, study_dir, meta_dict, portal_instance, logger, relaxed_mode, strict_maf_checks): - """Initialize a validator for a particular data file. - - :param study_dir: the path at which the study files can be found - :param meta_dict: dictionary of fields found in corresponding meta file - (such as stable id and data file name) - :param portal_instance: a PortalInstance object for which to validate - :param logger: logger instance for writing the log messages - :param relaxed_mode: relaxes validation of headerless clinical data to - prevent fast-failing - """ - self.filename = os.path.join(study_dir, meta_dict['data_filename']) - self.filenameShort = os.path.basename(self.filename) - self.line_number = 0 - self.cols = [] - self.numCols = 0 - self.newlines = ('',) - self.studyId = '' - self.headerWritten = False - # This one is set to True if file could be parsed/read until the end (happens in onComplete) - self.fileCouldBeParsed = False - self.portal = portal_instance - self.logger = CombiningLoggerAdapter( - logger, - extra={'filename_': self.filename}) - self.line_count_handler = None - self.meta_dict = meta_dict - self.relaxed_mode = relaxed_mode - self.strict_maf_checks = strict_maf_checks - self.fill_in_attr_defs = False - self.unique_col_data = {} - - def validate(self): - """Validate the data file.""" - # add a handler to keep track of the number of lines with errors - self.line_count_handler = LineCountHandler() - self.logger.logger.addHandler(self.line_count_handler) - try: - # actually validate the data file - self._validate_file() - finally: - self.logger.logger.removeHandler(self.line_count_handler) - - def _validate_file(self): - """Read through the data file and validate as much as can be parsed.""" - - self.logger.debug('Starting validation of file') - - # Validate whether the file can be opened - try: - opened_file = open(self.filename, 'r', newline=None) - opened_file.close() - except OSError: - self.logger.error('File could not be opened') - return - - # Validate whether the file is correct UTF-8 - try: - with open(self.filename, 'r', newline=None) as opened_file: - for line in opened_file: - pass - except UnicodeDecodeError: - self.logger.error("File contains invalid UTF-8 bytes. Please check values in file") - return - - # Reopen file from the start - with open(self.filename, 'r', newline=None) as data_file: - - # parse any block of start-of-file comment lines and the tsv header - top_comments = [] - line_number = 0 - for line_number, line in enumerate(data_file, - start=line_number + 1): - self.line_number = line_number - if line.startswith('#'): - top_comments.append(line) - else: - header_line = line - # end of the file's header - break - # if the loop wasn't broken by a non-commented line - else: - self.logger.error('No column header or data found in file', - extra={'line_number': self.line_number}) - return - - # parse start-of-file comment lines, if any - if not self.processTopLines(top_comments): - self.logger.error( - 'Invalid header comments, file cannot be parsed') - if not self.relaxed_mode: - return - else: - self.logger.info('Ignoring missing or invalid header comments. ' - 'Continuing with validation...') - self.fill_in_attr_defs = True - - # read five data lines to detect quotes in the tsv file - first_data_lines = [] - for i, line in enumerate(data_file): - first_data_lines.append(line) - if i >= 4: - break - sample_content = header_line + ''.join(first_data_lines) - try: - dialect = csv.Sniffer().sniff(sample_content, delimiters='\t') - except csv.Error: - self.logger.warning('Could not detect a tab separator. Confirm that the file should be single-column' - ' and else if all lines have the same number of columns, and if all separators are ' - 'tabs.') - return - # sniffer assumes " if no quote character exists - if dialect.quotechar == '"' and not ( - dialect.delimiter + '"' in sample_content or - '"' + dialect.delimiter in sample_content): - dialect.quoting = csv.QUOTE_NONE - if not self._checkTsvDialect(dialect): - self.logger.error( - 'Invalid file format, file cannot be parsed') - return - - # parse the first non-commented line as the tsv header - header_cols = next(csv.reader( - [header_line], - delimiter='\t', - quoting=csv.QUOTE_NONE, - strict=True)) - - # init dictionary for detection of unique value columns - # - will use column indexes as key and a set of values as value - # - only columns that are present in the data are added - for unique_col_name in self.UNIQUE_COLUMNS: - col_index = _get_column_index(header_cols, unique_col_name) - if col_index > -1: - self.unique_col_data[_get_column_index(header_cols, unique_col_name)] = [] - - if self.checkHeader(header_cols) > 0: - if not self.relaxed_mode: - self.logger.error( - 'Invalid column header, file cannot be parsed') - return - else: - self.logger.warning('Ignoring invalid column header. ' - 'Continuing with validation...') - - # read through the data lines of the file - csvreader = csv.reader(itertools.chain(first_data_lines, - data_file), - delimiter='\t', - quoting=csv.QUOTE_NONE, - strict=True) - for line_number, fields in enumerate(csvreader, - start=line_number + 1): - self.line_number = line_number - if all(x.strip() == '' for x in fields): - self.logger.error( - 'Blank line', - extra={'line_number': self.line_number}) - elif fields[0].startswith('#'): - self.logger.error( - "Data line starting with '#' skipped", - extra={'line_number': self.line_number}) - else: - # check valid data lines for uniqueness of values in - # unique data columns (set with UNIQUE_COLUMNS option) - for unique_col_index, previous_values in self.unique_col_data.items(): - cell_value = fields[unique_col_index] - # if a value is already in the set of unique values, raise an error - if cell_value in previous_values: - self.logger.error( - 'Cell value `%s` in column `%s` is not unique.', - cell_value, self.cols[unique_col_index]) - continue - # add the value to the set for comparison with other rows - previous_values.append(cell_value) - self.checkLine(fields) - - # (tuple of) string(s) of the newlines read (for 'rU' mode files) - self.newlines = data_file.newlines - - # after the entire file has been read - self.onComplete() - - def onComplete(self): - """Perform final validations after all lines have been checked. - - Overriding methods should call this superclass method *after* their own - validations, as it logs the message that validation was completed. - """ - self._checkLineBreaks() - # finalize - self.fileCouldBeParsed = True - self.logger.info('Validation of file complete') - self.logger.info('Read %d lines. ' - 'Lines with warning: %d. Lines with error: %d', - self.line_number, - self.line_count_handler.get_nr_lines_with_warning(), - self.line_count_handler.get_nr_lines_with_error()) - - def processTopLines(self, line_list): - """Hook to validate any list of comment lines above the TSV header. - - Return False if these lines are invalid and the file cannot be - parsed, True otherwise. - """ - return True - - def checkHeader(self, cols): - - """Check that the header has the correct items and set self.cols. - - :param cols: The list of column headers to be validated - - :return the number of errors found. - """ - - num_errors = 0 - - # TODO check for end-of-line whitespace - - self.cols = cols - self.numCols = len(self.cols) - - num_errors += self._checkRepeatedColumns() - - if self.REQUIRE_COLUMN_ORDER: - num_errors += self._checkOrderedRequiredColumns() - else: - num_errors += self._checkUnorderedRequiredColumns() - - return num_errors - - def checkLine(self, data): - """Check data values from a line after the file header. - - :param data: The list of values parsed from the line - """ - - if data[:self.numCols] == self.cols: - if self.logger.isEnabledFor(logging.ERROR): - self.logger.error( - 'Repeated header', - extra={'line_number': self.line_number, - 'cause': ', '.join(data[:self.numCols])}) - - line_col_count = len(data) - - if line_col_count != self.numCols: - self.logger.error('Expected %d columns based on header, ' - 'found %d', - self.numCols, line_col_count, - extra={'line_number': self.line_number}) - - if not self.ALLOW_BLANKS: - for col_index, col_name in enumerate(self.cols): - if col_index < line_col_count and data[col_index].strip() == '': - self.logger.error( - 'Blank cell found in column', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': "'%s' (in column '%s')" % ( - data[col_index], col_name)}) - - def _checkUnorderedRequiredColumns(self): - """Check for missing column headers, independent of their position. - - Return the number of errors encountered. - """ - num_errors = 0 - for col_name in self.REQUIRED_HEADERS: - if col_name not in self.cols: - self.logger.error( - 'Missing column: %s', - col_name, - extra={'line_number': self.line_number, - 'cause': ', '.join( - self.cols[:len(self.REQUIRED_HEADERS)]) + - ', (...)'}) - num_errors += 1 - return num_errors - - def _checkOrderedRequiredColumns(self): - """Check if the column header for each position is correct. - - Return the number of errors encountered. - """ - num_errors = 0 - for col_index, col_name in enumerate(self.REQUIRED_HEADERS): - if col_index >= self.numCols: - num_errors += 1 - self.logger.error( - "Invalid header: expected '%s' in column %d," - " found end of line", - col_name, col_index + 1, - extra={'line_number': self.line_number}) - elif self.cols[col_index] != col_name: - num_errors += 1 - self.logger.error( - "Invalid header: expected '%s' in this column", - col_name, - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': self.cols[col_index]}) - return num_errors - - def _checkTsvDialect(self, dialect): - """Check if a csv.Dialect subclass describes a valid cBio data file.""" - if dialect.delimiter != '\t': - self.logger.error('Not a tab-delimited file', - extra={'cause': 'delimiters of type: %s' % - repr(dialect.delimiter)}) - return False - if dialect.quoting != csv.QUOTE_NONE: - self.logger.warning('Found quotation marks around field(s) in the first rows of the file. ' - 'Fields and values surrounded by quotation marks might be incorrectly ' - 'loaded (i.e. with the quotation marks included as part of the value)', - extra={'cause': 'quotation marks of type: [%s] ' % - repr(dialect.quotechar)[1:-1]}) - return True - - def _checkLineBreaks(self): - """Checks line breaks, reports to user.""" - if self.newlines not in("\r\n", "\r", "\n"): - self.logger.error('No line breaks recognized in file', - extra={'cause': repr(self.newlines)[1:-1]}) - - def checkInt(self, value): - """Checks if a value is an integer.""" - try: - int(value) - return True - except ValueError: - return False - - def checkFloat(self, value): - """Check if a string represents a floating-point numeral.""" - try: - float(value) - return True - except ValueError: - return False - - def checkSampleId(self, sample_id, column_number): - """Check whether a sample id is defined, logging an error if not. - - Return True if the sample id was valid, False otherwise. - """ - if sample_id not in DEFINED_SAMPLE_IDS: - self.logger.error( - 'Sample ID not defined in clinical file', - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': sample_id}) - return False - return True - - def checkPatientId(self, patient_id, column_number): - """Check whether a patient id is defined, logging an error if not. - - Return True if the patient id was valid, False otherwise. - """ - if patient_id not in PATIENTS_WITH_SAMPLES: - self.logger.error( - 'Patient ID not defined in clinical file', - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': patient_id}) - return False - return True - - # TODO: let this function know the column numbers for logging messages - def checkGeneIdentification(self, gene_symbol=None, entrez_id=None, profile_type=None): - """Attempt to resolve a symbol-Entrez pair, logging any issues. - - It will fail to resolve in these cases: - 1. (error) Entrez gene id and gene symbol are both missing (None) - If self.portal.hugo_entrez_map and self.portal.alias_entrez_map are - defined: - 2. (warning) Only one of the identifiers is supplied, and its value - cannot be found in the portal - 3. (error) The gene symbol maps to multiple Entrez gene ids - 4. (error) The gene alias maps to multiple Entrez gene ids - - Furthermore, the function logs a warning in the following cases, if - self.portal.hugo_entrez_map and self.portal.alias_entrez_map are - defined: - 1. (warning) Entrez gene id exists, but the gene symbol specified is not - known to the portal - 2. (warning) Gene symbol and Entrez gene id do not match - 3. (warning) The Hugo gene symbol maps to a single Entrez gene id, - but is also associated to other genes as an alias. - - Return the Entrez gene id (or gene symbol if the PortalInstance maps are - undefined and the mapping step is skipped), or None if no gene could be - unambiguously identified. - """ - # set to upper, as both maps contain symbols in upper - if gene_symbol is not None: - gene_symbol = gene_symbol.upper() - if self.portal.species == "human": - # Check in case gene symbol is not null if it starts with an integer - if gene_symbol != '': - # Check if the gene_symbol starts with a number - if gene_symbol[0] in ['0', '1', '2', '3', '4', '5', '6', '7', '8', '9']: - # In case portal properties are defined check if the gene symbol that starts - # with an integer is in the alias table, if not report an error - if self.portal.hugo_entrez_map is not None and self.portal.alias_entrez_map is not None: - if gene_symbol not in self.portal.hugo_entrez_map and \ - gene_symbol not in self.portal.alias_entrez_map: - self.logger.warning('Hugo Symbol is not in gene or alias table and starts with a ' - 'number. This can be caused by unintentional gene conversion in Excel.', - extra={'line_number': self.line_number, 'cause': gene_symbol}) - # If alias table cannot be checked report warning that hugo symbols normally do not start - # with a number - else: - self.logger.warning('Hugo Symbol should not start with a number.', - extra={'line_number': self.line_number, 'cause': gene_symbol}) - - if entrez_id is not None: - try: - entrez_as_int = int(entrez_id) - except ValueError: - entrez_as_int = None - if entrez_as_int is None: - self.logger.warning( - 'Entrez gene id is not an integer. ' - 'This record will not be loaded.', - extra={'line_number': self.line_number, - 'cause': entrez_id}) - return None - elif entrez_as_int <= 0: - self.logger.error( - 'Entrez gene id is non-positive.', - extra={'line_number': self.line_number, - 'cause': entrez_id}) - return None - - # check whether at least one is present - if entrez_id is None and gene_symbol is None: - if profile_type != 'SV': - self.logger.error( - 'No Entrez gene id or gene symbol provided for gene.', - extra={'line_number': self.line_number}) - return None - - # if portal information is absent, skip the rest of the checks - if (self.portal.hugo_entrez_map is None or - self.portal.alias_entrez_map is None): - return entrez_id or gene_symbol - - # try to use the portal maps to resolve to a single Entrez gene id - identified_entrez_id = None - if entrez_id is not None: - if entrez_as_int in self.portal.entrez_set: - # set the value to be returned - identified_entrez_id = entrez_id - # some warnings if the gene symbol is specified too - if gene_symbol is not None: - if (gene_symbol not in self.portal.hugo_entrez_map and - gene_symbol not in self.portal.alias_entrez_map): - self.logger.warning( - 'Entrez gene id exists, but gene symbol specified ' - 'is not known to the cBioPortal instance. The ' - 'gene symbol will be ignored. Might be ' - 'wrong mapping, new or deprecated gene symbol.', - extra={'line_number': self.line_number, - 'cause': gene_symbol}) - elif entrez_as_int not in itertools.chain( - self.portal.hugo_entrez_map.get(gene_symbol, []), - self.portal.alias_entrez_map.get(gene_symbol, [])): - self.logger.warning( - 'Entrez gene id and gene symbol do not match. ' - 'The gene symbol will be ignored. Might be ' - 'wrong mapping or recycled gene symbol.', - extra={'line_number': self.line_number, - 'cause': '(%s, %s)' % (gene_symbol, - entrez_id)}) - else: - self.logger.warning( - 'Entrez gene id not known to the cBioPortal instance. ' - 'This record will not be loaded. Might be new or deprecated ' - 'Entrez gene id.', - extra={'line_number': self.line_number, - 'cause': entrez_id}) - # no Entrez gene id, only a gene symbol - elif gene_symbol is not None: - # count canonical gene symbols and aliases that map this symbol to - # a gene - num_entrezs_for_hugo = len( - self.portal.hugo_entrez_map.get(gene_symbol, [])) - num_entrezs_for_alias = len( - self.portal.alias_entrez_map.get(gene_symbol, [])) - if num_entrezs_for_hugo == 1: - # set the value to be returned - identified_entrez_id = \ - str(self.portal.hugo_entrez_map[gene_symbol][0]) - # check if there are other *different* Entrez gene ids associated - # with this gene symbol - other_entrez_ids_in_aliases = [ - x for x in - self.portal.alias_entrez_map.get(gene_symbol, []) if - x != identified_entrez_id] - if len(other_entrez_ids_in_aliases) >= 1: - # give a warning, as the symbol may have been used to refer - # to different entrez_ids over time - self.logger.warning( - 'Gene symbol maps to a single Entrez gene id, ' - 'but is also associated to other genes as an ' - 'alias. The system will assume the official gene ' - 'symbol to be the intended one.', - extra={'line_number': self.line_number, - 'cause': gene_symbol}) - elif num_entrezs_for_hugo > 1: - # nb: this should actually never occur, see also https://github.com/cBioPortal/cbioportal/issues/799 - self.logger.error( - 'Gene symbol maps to multiple Entrez gene ids (%s), ' - 'please specify which one you mean.', - '/'.join(str(entrez) for entrez in self.portal.hugo_entrez_map[gene_symbol]), - extra={'line_number': self.line_number, - 'cause': gene_symbol}) - # no canonical symbol, but a single unambiguous alias - elif num_entrezs_for_alias == 1: - # set the value to be returned - identified_entrez_id = \ - str(self.portal.alias_entrez_map[gene_symbol][0]) - # no canonical symbol, and multiple different aliases - elif num_entrezs_for_alias > 1: - # Loader deals with this, so give warning - # TODO: move matched IDs out of the message for collapsing - self.logger.warning( - 'Gene alias maps to multiple Entrez gene ids (%s), ' - 'please specify which one you mean or choose a non-ambiguous symbol.', - '/'.join(self.portal.alias_entrez_map[gene_symbol]), - extra={'line_number': self.line_number, - 'cause': gene_symbol}) - # no canonical symbol and no alias - else: - self.logger.warning( - 'Gene symbol not known to the cBioPortal instance. This ' - 'record will not be loaded.', - extra={'line_number': self.line_number, - 'cause': gene_symbol}) - - return identified_entrez_id - - def _checkRepeatedColumns(self): - num_errors = 0 - seen = set() - for col_num, col in enumerate(self.cols): - if col not in seen: - seen.add(col) - else: - num_errors += 1 - self.logger.error('Repeated column header', - extra={'line_number': self.line_number, - 'column_number': col_num, - 'cause': col}) - return num_errors - - @staticmethod - def load_chromosome_lengths(reference_genome, logger): - - """Get the length of each chromosome and return a dict. - - The dict will not include unplaced contigs, alternative haplotypes or - the mitochondrial chromosome. - """ - chrom_size_file = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'chromosome_sizes.json') - try: - with open(chrom_size_file,'r') as f: - chrom_sizes = json.load(f) - except FileNotFoundError: - raise FileNotFoundError('Could not open chromosome_sizes.json. ' - 'If it does not exist you can download it using the script ' - 'downloadChromosomeSizes.py.') - - logger.debug("Retrieving chromosome lengths from '%s'", - chrom_size_file) - - try: - chrom_size_dict = chrom_sizes[reference_genome] - except KeyError: - raise KeyError('Could not load chromosome sizes for genome build %s. Expecting one of ' - '["hg19", "hg38", "mm10"]' % reference_genome) - - return chrom_size_dict - - def parse_chromosome_num(self, value, column_number, chromosome_lengths): - """Parse a chromosome number, logging any errors for this column - - Return the parsed value if valid, None otherwise. - """ - - value_is_valid = False - - for chromosome in chromosome_lengths: - if chromosome == value: - value_is_valid = True - - if not value_is_valid: - self.logger.error('Chromosome not found in the genome.', - extra={'line_number': self.line_number, - 'cause': value}) - return None - - return value - - def parse_genomic_coord(self, value, column_number): - """Parse a genomic coordinate, logging any errors for this column. - - Return the parsed value if valid, None otherwise. - """ - parsed_value = None - try: - parsed_value = int(value) - except ValueError: - self.logger.error("Genomic position is not an integer", - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - return parsed_value - - def parse_exon(self, value, column_number): - """Parse a exon, logging any errors for this column. - - Return the parsed value if valid, None otherwise. - """ - parsed_value = None - try: - parsed_value = int(value) - except ValueError: - self.logger.error("Exon is not an integer", - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - return parsed_value - -class FeaturewiseFileValidator(Validator): - - """Validates a file with rows for features and columns for ids and samples. - - The first few columns (collectively defined in the class attributes - REQUIRED_HEADERS and OPTIONAL_HEADERS) identify the features - (e.g. genes) and the rest correspond to the samples. - - Subclasses should override the parseFeatureColumns(self,nonsample_col_vals) - method to check the non-sample columns preceding them, returning the unique - id of the feature. The method can find the names of the columns recognized - in the file in self.nonsample_cols. checkValue(self, value, col_index) - should also be overridden to check a value in a sample column. - """ - - OPTIONAL_HEADERS = [] - REQUIRE_COLUMN_ORDER = False - - def __init__(self, *args, **kwargs): - super(FeaturewiseFileValidator, self).__init__(*args, **kwargs) - self.nonsample_cols = [] - self.num_nonsample_cols = 0 - self.sampleIds = [] - self._feature_id_lines = {} - - def checkHeader(self, cols): - """Validate the header and read sample IDs from it. - - Return the number of fatal errors. - """ - num_errors = super(FeaturewiseFileValidator, self).checkHeader(cols) - # collect non-sample columns: - for col_name in self.cols: - if col_name in self.REQUIRED_HEADERS + self.OPTIONAL_HEADERS: - # add it to the list of non-sample columns in the file: - self.nonsample_cols.append(col_name) - else: - # reached samples group - break - self.num_nonsample_cols = len(self.nonsample_cols) - num_errors += self._set_sample_ids_from_columns() - return num_errors - - def checkLine(self, data): - """Check the feature and sample columns in a data line.""" - super(FeaturewiseFileValidator, self).checkLine(data) - # parse and check the feature identifiers (implemented by subclasses) - feature_id = self.parseFeatureColumns(data[:self.num_nonsample_cols]) - # skip line if no feature was identified - if feature_id is None: - return - # skip line with an error if the feature was encountered before - if feature_id in self._feature_id_lines: - self.logger.warning( - 'Duplicate line for a previously listed feature/gene, ' - 'this line will be ignored.', - extra={ - 'line_number': self.line_number, - 'cause': '%s (already defined on line %d)' % ( - feature_id, - self._feature_id_lines[feature_id])}) - return - # remember the feature id and check the value for each sample - self._feature_id_lines[feature_id] = self.line_number - for column_index, value in enumerate(data): - if column_index >= len(self.nonsample_cols): - # checkValue() should be implemented by subclasses - self.checkValue(value, column_index) - - def parseFeatureColumns(self, nonsample_col_vals): - """Override to check vals in the non-sample cols and return the id.""" - raise NotImplementedError('The {} class did not provide a method to ' - 'validate values in sample columns.'.format( - self.__class__.__name__)) - - def checkValue(self, value, column_index): - """Override to validate a value in a sample column.""" - raise NotImplementedError('The {} class did not provide a method to ' - 'validate values in sample columns.'.format( - self.__class__.__name__)) - - def _set_sample_ids_from_columns(self): - """Extracts sample IDs from column headers and set self.sampleIds.""" - num_errors = 0 - # check whether any sample columns are present - if len(self.cols[self.num_nonsample_cols:]) == 0: - self.logger.error('No sample columns found', - extra={'line_number': self.line_number}) - num_errors += 1 - # set self.sampleIds to the list of sample column names - self.sampleIds = self.cols[self.num_nonsample_cols:] - # validate each sample id - num_errors += self.checkId() - return num_errors - - def checkId(self): - # check either sample Id or patient Id - # override this to check Id - return 0 - - def checkIdInSamples(self): - # check sample Id - num_errors = 0 - for index, sample_id in enumerate(self.sampleIds): - if not self.checkSampleId( - sample_id, - column_number=self.num_nonsample_cols + index + 1): - num_errors += 1 - if ' ' in sample_id: - self.logger.error( - 'White space in SAMPLE_ID is not supported', - extra={'line_number': self.line_number, - 'cause': sample_id}) - num_errors += 1 - return num_errors - - -class GenewiseFileValidator(FeaturewiseFileValidator): - - """FeatureWiseValidator that has gene symbol and/or Entrez gene id as feature columns.""" - - REQUIRED_HEADERS = [] - OPTIONAL_HEADERS = ['Hugo_Symbol', 'Entrez_Gene_Id'] - ALLOW_BLANKS = True - NULL_VALUES = ["NA"] - - def checkHeader(self, cols): - """Validate the header and read sample IDs from it. - - Return the number of fatal errors. - """ - num_errors = super(GenewiseFileValidator, self).checkHeader(cols) - # see if at least one of the gene identifiers is in the right place - - if ('Hugo_Symbol' in self.sampleIds or - 'Entrez_Gene_Id' in self.sampleIds): - self.logger.error('Hugo_Symbol or Entrez_Gene_Id need to be placed before the ' - 'sample ID columns of the file.', - extra={'line_number': self.line_number}) - num_errors += 1 - elif not ('Hugo_Symbol' in self.nonsample_cols or - 'Entrez_Gene_Id' in self.nonsample_cols): - self.logger.error('At least one of the columns Hugo_Symbol or ' - 'Entrez_Gene_Id needs to be present.', - extra={'line_number': self.line_number}) - num_errors += 1 - elif ('Entrez_Gene_Id' not in self.nonsample_cols): - self.logger.warning('The recommended column Entrez_Gene_Id was not found. ' - 'Using Hugo_Symbol for all gene parsing.', - extra={'line_number': self.line_number}) - return num_errors - - def parseFeatureColumns(self, nonsample_col_vals): - """Check the gene identifier columns.""" - hugo_symbol = None - entrez_id = None - if 'Hugo_Symbol' in self.nonsample_cols: - hugo_index = self.nonsample_cols.index('Hugo_Symbol') - hugo_symbol = nonsample_col_vals[hugo_index].strip() - # treat empty string as a missing value - if hugo_symbol == '': - hugo_symbol = None - if 'Entrez_Gene_Id' in self.nonsample_cols: - entrez_index = self.nonsample_cols.index('Entrez_Gene_Id') - entrez_id = nonsample_col_vals[entrez_index].strip() - # treat the empty string as a missing value - if entrez_id == '': - entrez_id = None - return self.checkGeneIdentification(hugo_symbol, entrez_id) - - def checkId(self): - return self.checkIdInSamples() - - -class ContinuousValuesValidator(GenewiseFileValidator): - """Validator for matrix files mapping floats to gene/sample combinations. - - Allowing missing values indicated by GenewiseFileValidator.NULL_VALUES. - """ - - def checkValue(self, value, col_index): - """Check a value in a sample column.""" - - stripped_value = value.strip() - if stripped_value not in self.NULL_VALUES and not self.checkFloat(stripped_value): - self.logger.error("Value is neither a real number nor " + ', '.join(self.NULL_VALUES), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - -class CNAValidator(GenewiseFileValidator): - """Common logic to validate CNA data types - - This is an abstract class. Should be subclassed to a class that knows how to check values. - """ - - OPTIONAL_HEADERS = ['Cytoband'] + GenewiseFileValidator.OPTIONAL_HEADERS - - def checkGeneIdentification(self, gene_symbol=None, entrez_id=None): - if gene_symbol is not None: - if '|' in gene_symbol: - gene_symbol, __ = gene_symbol.split('|', maxsplit=1) - return super().checkGeneIdentification(gene_symbol, entrez_id) - - -class CNADiscreteValidator(CNAValidator): - """ Logic to validate discrete CNA data.""" - - ALLOWED_VALUES = ['-2', '-1.5', '-1', '0', '1', '2'] + GenewiseFileValidator.NULL_VALUES - - def checkValue(self, value, col_index): - """Check a value in a sample column.""" - if value.strip() not in self.ALLOWED_VALUES: - if self.logger.isEnabledFor(logging.ERROR): - self.logger.error( - 'Invalid CNA value: possible values are [%s]', - ', '.join(self.ALLOWED_VALUES), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - def validate(self): - super(CNADiscreteValidator, self).validate() - if 'pd_annotations_filename' in self.meta_dict: - study_dir = os.path.dirname(self.filename) - meta_dict = dict(self.meta_dict) - meta_dict['data_filename'] = self.meta_dict['pd_annotations_filename'] - annotations_validator = CNADiscretePDAAnnotationsValidator(study_dir, meta_dict, self.portal, - self.logger.logger, self.relaxed_mode, self.strict_maf_checks) - annotations_validator.data_entrez_gene_ids = set(self._feature_id_lines.keys()) - annotations_validator.validate() - -class CustomDriverAnnotationValidator(Validator): - - NULL_DRIVER_VALUES = ('Putative_Passenger', 'Putative_Driver', 'NA', 'Unknown', '') - NULL_DRIVER_TIERS_VALUES = ('', 'NA') - CUSTOM_DRIVER_CHECK_FUNCTION_MAP = { - 'cbp_driver': 'checkDriver', - 'cbp_driver_tiers': 'checkDriverTiers', - 'cbp_driver_annotation': 'checkFilterAnnotation', - 'cbp_driver_tiers_annotation': 'checkFilterAnnotation', - } - - def __init__(self, *args, **kwargs): - super(CustomDriverAnnotationValidator, self).__init__(*args, **kwargs) - self.extra_exists = False - self.extra = '' - self.tiers = set() - - def checkHeader(self, cols): - # raise errors if the filter_annotations are found without the "filter" columns - num_errors = super(CustomDriverAnnotationValidator, self).checkHeader(cols) - if 'cbp_driver_annotation' in cols and 'cbp_driver' not in cols: - self.logger.error('Column cbp_driver_annotation ' - 'found without any cbp_driver ' - 'column.', extra={'column_number': cols.index('cbp_driver_annotation')}) - num_errors += 1 - if 'cbp_driver_tiers_annotation' in cols and 'cbp_driver_tiers' not in cols: - self.logger.error('Column cbp_driver_tiers_annotation ' - 'found without any cbp_driver_tiers ' - 'column.', extra={'column_number': cols.index('cbp_driver_tiers_annotation')}) - num_errors += 1 - # raise errors if the "filter" columns are found without the filter_annotations - if 'cbp_driver' in cols and 'cbp_driver_annotation' not in cols: - self.logger.error('Column cbp_driver ' - 'found without any cbp_driver_annotation ' - 'column.', extra={'column_number': cols.index('cbp_driver')}) - num_errors += 1 - if 'cbp_driver_tiers' in cols and 'cbp_driver_tiers_annotation' not in cols: - self.logger.error('Column cbp_driver_tiers ' - 'found without any cbp_driver_tiers_annotation ' - 'column.', extra={'column_number': cols.index('cbp_driver_tiers')}) - num_errors += 1 - return num_errors - - def checkLine(self, data): - super(CustomDriverAnnotationValidator, self).checkLine(data) - has_custom_driver_cols = len(list(set(self.cols) & set(self.CUSTOM_DRIVER_CHECK_FUNCTION_MAP.keys()))) > 0 - if not has_custom_driver_cols: - return - - driver_value, driver_annotation, driver_tiers_value, driver_tiers_annotation = self.parsePdAnnotations(data) - if driver_tiers_annotation is not None and driver_tiers_value is None: - self.logger.error( - 'This line has no value for cbp_driver_tiers ' - 'and a value for cbp_driver_tiers_annotation. ' - 'Please, fill the cbp_driver_tiers column.', - extra={'line_number': self.line_number, - 'cause': driver_tiers_value}) - - for col_index, col_name in enumerate(self.cols): - # validate the column if there's a function defined for it - try: - check_function_name = self.CUSTOM_DRIVER_CHECK_FUNCTION_MAP[col_name] - except KeyError: - pass - else: - col_index = self.cols.index(col_name) - value = data[col_index] - # get the checking method for this column - checking_function = getattr(self, check_function_name) - if not checking_function(value): - self.printDataInvalidStatement(value, col_index) - - def parsePdAnnotations(self, data): - driver_value = None - driver_annotation = None - driver_tiers_value = None - driver_tiers_annotation = None - if 'cbp_driver' in self.cols: - driver_value = data[self.cols.index('cbp_driver')].strip() - # treat the empty string as a missing value - if driver_value in (''): - driver_value = None - if 'cbp_driver_annotation' in self.cols: - driver_annotation = data[self.cols.index('cbp_driver_annotation')].strip() - # treat the empty string as a missing value - if driver_annotation in (''): - driver_annotation = None - if 'cbp_driver_tiers' in self.cols: - driver_tiers_value = data[self.cols.index('cbp_driver_tiers')].strip() - # treat the empty string as a missing value - if driver_tiers_value in (''): - driver_tiers_value = None - if 'cbp_driver_tiers_annotation' in self.cols: - driver_tiers_annotation = data[self.cols.index('cbp_driver_tiers_annotation')].strip() - # treat the empty string as a missing value - if driver_tiers_annotation in (''): - driver_tiers_annotation = None - return driver_value, driver_annotation, driver_tiers_value, driver_tiers_annotation - - def checkDriver(self, value): - """Validate the values in the cbp_driver column.""" - if value not in self.NULL_DRIVER_VALUES: - self.extra = 'Only "Putative_Passenger", "Putative_Driver", "NA", "Unknown" and "" (empty) are allowed.' - self.extra_exists = True - return False - return True - - def checkDriverTiers(self, value): - """Report the tiers in the cbp_driver_tiers column (skipping the empty values).""" - if value not in self.NULL_DRIVER_TIERS_VALUES: - self.logger.info('Values contained in the column cbp_driver_tiers that will appear in the "Mutation Color" ' - 'menu of the Oncoprint', - extra={'line_number': self.line_number, 'column_number': self.cols.index('cbp_driver_tiers'), 'cause': value}) - self.tiers.add(value) - if len(self.tiers) > 10: - self.logger.warning('cbp_driver_tiers contains more than 10 different tiers.', - extra={'line_number': self.line_number, 'column_number': self.cols.index('cbp_driver_tiers'), - 'cause': value}) - if len(value) > 50: - self.extra= 'cbp_driver_tiers column does not support values longer than 50 characters' - self.extra_exists = True - return False - return True - - def checkFilterAnnotation(self, value): - """Check if the annotation values are smaller than 80 characters.""" - if len(value) > 80: - self.extra = 'cbp_driver_annotation and cbp_driver_tiers_annotation columns do not support annotations longer than 80 characters' - self.extra_exists = True - return False - return True - - def printDataInvalidStatement(self, value, col_index): - """Prints out statement for invalid values detected.""" - message = ("Value in column '%s' is invalid" % - self.cols[col_index]) - if self.extra_exists: - message = self.extra - self.extra = '' - self.extra_exists = False - self.logger.error( - message, - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - -class CustomNamespacesValidator(Validator): - """ Logic to validate custom namespace data.""" - - def __init__(self, *args, **kwargs): - super(CustomNamespacesValidator, self).__init__(*args, **kwargs) - - def checkHeader(self, cols): - num_errors = super(CustomNamespacesValidator, self).checkHeader(cols) - - #Namespaces column are compulsory when custom namespaces are defined in meta file - namespaces = [] - if 'namespaces' in self.meta_dict: - namespaces = self.meta_dict['namespaces'].split(',') - for namespace in namespaces: - defined_namespace = namespace.strip().lower() - defined_namespace_found = any([True for col in cols if col.lower().startswith(defined_namespace + '.')]) - if not defined_namespace_found: - self.logger.error('%s namespace defined but the file does not have any matching columns' - % (defined_namespace)) - num_errors += 1 - - return num_errors - -class CNADiscreteLongValidator(CustomDriverAnnotationValidator, CustomNamespacesValidator): - """ Logic to validate discrete long CNA data.""" - REQUIRED_HEADERS = [ - 'Sample_Id', - 'Value' - ] - OPTIONAL_HEADERS = [ - 'Hugo_Symbol', - 'Entrez_Gene_Id', - 'cbp_driver', - 'cbp_driver_annotation', - 'cbp_driver_tiers', - 'cbp_driver_tiers_annotation' - ] - REQUIRE_COLUMN_ORDER = False - ALLOW_BLANKS = True - - NULL_VALUES = ['NA'] - - ALLOWED_CNA_VALUES = ['-2', '-1.5', '-1', '0', '1', '2'] + NULL_VALUES - - - - def __init__(self, *args, **kwargs): - super(CNADiscreteLongValidator, self).__init__(*args, **kwargs) - self.cna_entries = {} #Dictionary of dictionaries with sampleid: {entrez: hugo} - self.cna_entry = namedtuple('CNAEntry', 'hugo line') - - def checkHeader(self, cols): - num_errors = super(CNADiscreteLongValidator, self).checkHeader(cols) - if ('Hugo_Symbol' not in cols and - 'Entrez_Gene_Id' not in cols): - self.logger.error('Hugo_Symbol or Entrez_Gene_Id column needs to be present in the file.', - extra={'line_number': self.line_number}) - num_errors += 1 - - return num_errors - - def checkLine(self, data): - super(CNADiscreteLongValidator, self).checkLine(data) - sample_id_index = self.cols.index('Sample_Id') - self.checkSampleId(data[sample_id_index], column_number = sample_id_index + 1) - - entrez_gene_id = None - hugo_symbol = None - if 'Entrez_Gene_Id' in self.cols: - if data[self.cols.index('Entrez_Gene_Id')] != '': - entrez_gene_id = data[self.cols.index('Entrez_Gene_Id')] - if 'Hugo_Symbol' in self.cols: - if data[self.cols.index('Hugo_Symbol')] != '': - hugo_symbol = data[self.cols.index('Hugo_Symbol')] - entrez_gene_id = self.checkGeneIdentification(hugo_symbol, entrez_gene_id) - - #Check uniqueness gene - sampleId - sample_id = data[self.cols.index('Sample_Id')] - if entrez_gene_id is not None: - if sample_id in self.cna_entries.keys(): - if entrez_gene_id in self.cna_entries[sample_id]: - if hugo_symbol is not None and self.cna_entries[sample_id][entrez_gene_id].hugo is not None: - if self.cna_entries[sample_id][entrez_gene_id].hugo == hugo_symbol: - self.logger.error( - 'Duplicated gene found within the same sample.', - extra = {'line_number': self.line_number, - 'cause': 'Sample Id: %s, Hugo Symbol: %s, Entrez Gene Id: %s ' - '(already defined on line %d)' % ( - sample_id, - hugo_symbol, - entrez_gene_id, - self.cna_entries[sample_id][entrez_gene_id].line)}) - else: - self.logger.error( - 'Two different Hugo Symbols that map to the same Entrez Gene Id ' - 'found within the same sample.', - extra = {'line_number': self.line_number, - 'cause': 'Sample Id: %s, Entrez Gene Id: %s, ' - 'Hugo Symbol: %s (already defined on line %d, ' - 'with Hugo Symbol: %s)' % ( - sample_id, - entrez_gene_id, - hugo_symbol, - self.cna_entries[sample_id][entrez_gene_id].line, - self.cna_entries[sample_id][entrez_gene_id].hugo)}) - elif hugo_symbol is not None or self.cna_entries[sample_id][entrez_gene_id].hugo is not None: - #self.logger.error("Error: %s %s %s %s" %(str(sample_id), str(entrez_gene_id), str(hugo_symbol), str(self.cna_entries[sample_id]))) - self.logger.error( - 'A Hugo Symbol that maps to an already existing Entrez Gene ' - 'Id found within the same sample.', - extra = {'line_number': self.line_number, - 'cause': 'Sample Id: %s, Hugo Symbol: %s, ' - 'Entrez Gene Id: %s ' - '(already defined on line %d)' % ( - sample_id, - hugo_symbol if hugo_symbol is not None else self.cna_entries[sample_id][entrez_gene_id].hugo, - entrez_gene_id, - self.cna_entries[sample_id][entrez_gene_id].line)}) - else: - self.logger.error( - 'Duplicated Entrez Gene Id found within the same sample.', - extra = {'line_number': self.line_number, - 'cause': 'Sample Id: %s, Entrez Gene Id: %s ' - '(already defined on line %d)' % ( - sample_id, - entrez_gene_id, - self.cna_entries[sample_id][entrez_gene_id].line)}) - else: - self.cna_entries[sample_id][entrez_gene_id] = self.cna_entry(hugo=hugo_symbol, line=self.line_number) - else: - self.cna_entries[sample_id] = {entrez_gene_id: self.cna_entry(hugo=hugo_symbol, line=self.line_number)} - - if 'Value' in self.cols: - cna_value = data[self.cols.index('Value')] - if cna_value.strip() not in self.ALLOWED_CNA_VALUES: - if self.logger.isEnabledFor(logging.ERROR): - self.logger.error( - 'Invalid CNA value: possible values are [%s]', - ', '.join(self.ALLOWED_CNA_VALUES), - extra={'line_number': self.line_number, - 'column_number': self.cols.index('Value'), - 'cause': cna_value}) - - def onComplete(self): - #End validation of this data type by running the super function - super(CNADiscreteLongValidator, self).onComplete() - -class CNADiscretePDAAnnotationsValidator(CustomDriverAnnotationValidator): - REQUIRED_HEADERS = [ - 'SAMPLE_ID' - ] - OPTIONAL_HEADERS = [ - 'Hugo_Symbol', - 'Entrez_Gene_Id', - 'cbp_driver', - 'cbp_driver_annotation', - 'cbp_driver_tiers', - 'cbp_driver_tiers_annotation' - ] - REQUIRE_COLUMN_ORDER = False - ALLOW_BLANKS = True - - def __init__(self, *args, **kwargs): - super(CNADiscretePDAAnnotationsValidator, self).__init__(*args, **kwargs) - self.data_entrez_gene_ids = None - self.entrez_gene_ids = set() - self.extraCols = [] - - def checkHeader(self, cols): - num_errors = super(CNADiscretePDAAnnotationsValidator, self).checkHeader(cols) - if ('Hugo_Symbol' not in cols and - 'Entrez_Gene_Id' not in cols): - self.logger.error('Hugo_Symbol or Entrez_Gene_Id column needs to be present in the file.', - extra={'line_number': self.line_number}) - num_errors += 1 - return num_errors - - def checkLine(self, data): - super(CNADiscretePDAAnnotationsValidator, self).checkLine(data) - sample_id_index = self.cols.index('SAMPLE_ID') - self.checkSampleId(data[sample_id_index], column_number = sample_id_index + 1) - - entrez_gene_id = None - hugo_symbol = None - if 'Entrez_Gene_Id' in self.cols: - if data[self.cols.index('Entrez_Gene_Id')] != '': - entrez_gene_id = data[self.cols.index('Entrez_Gene_Id')] - if 'Hugo_Symbol' in self.cols: - if data[self.cols.index('Hugo_Symbol')] != '': - hugo_symbol = data[self.cols.index('Hugo_Symbol')] - entrez_gene_id = self.checkGeneIdentification(hugo_symbol, entrez_gene_id) - if entrez_gene_id is not None: - self.entrez_gene_ids.add(entrez_gene_id) - - def onComplete(self): - """Perform final validations based on the data parsed.""" - if self.data_entrez_gene_ids is not None: - extra_entrez_gene_ids = self.entrez_gene_ids.difference(self.data_entrez_gene_ids) - if (extra_entrez_gene_ids): - self.logger.error( - 'Following Entrez_Gene_Id are present in pd annotation file, but not in CNA data [%s]', - ', '.join([ str(id) for id in extra_entrez_gene_ids ])) - super(CNADiscretePDAAnnotationsValidator, self).onComplete() - -class CNAContinuousValuesValidator(CNAValidator, ContinuousValuesValidator): - """Logic to validate continuous CNA data.""" - - -class MutationsExtendedValidator(CustomDriverAnnotationValidator, CustomNamespacesValidator): - """Sub-class mutations_extended validator.""" - - # TODO - maybe this should comply to https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+%28MAF%29+Specification ? - REQUIRED_HEADERS = [ - 'Tumor_Sample_Barcode', - 'Hugo_Symbol', # Required to initialize the Mutation Mapper tabs - 'Variant_Classification', # seems to be important during loading/filtering step. - ] - REQUIRE_COLUMN_ORDER = False - ALLOW_BLANKS = True - - # MutationFilter.java filters these types. Therefore, there is no reason to add warnings and errors for them - SKIP_VARIANT_TYPES = [ - 'Silent', - 'Intron', - '3\'UTR', - '3\'Flank', - '5\'UTR', - '5\'Flank', - 'IGR', - 'RNA' - ] - - NULL_AA_CHANGE_VALUES = ('', 'NULL', 'NA') - - # extra unofficial Variant classification values from https://github.com/mskcc/vcf2maf/issues/88: - EXTRA_VARIANT_CLASSIFICATION_VALUES = ['Splice_Region', 'Fusion'] - # MAF values for Variant_Classification column - # from https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+%28MAF%29+Specification + EXTRA values + Unknown: - VARIANT_CLASSIFICATION_VALUES = [ - 'Frame_Shift_Del', - 'Frame_Shift_Ins', - 'In_Frame_Del', - 'In_Frame_Ins', - 'Missense_Mutation', - 'Nonsense_Mutation', - 'Splice_Site', - 'Translation_Start_Site', - 'Nonstop_Mutation', - 'Targeted_Region', - 'De_novo_Start_InFrame', - 'De_novo_Start_OutOfFrame'] + SKIP_VARIANT_TYPES + EXTRA_VARIANT_CLASSIFICATION_VALUES + ['Unknown'] - - REQUIRED_ASCN_COLUMNS = [ - 'ASCN.ASCN_METHOD', - 'ASCN.ASCN_INTEGER_COPY_NUMBER', - 'ASCN.TOTAL_COPY_NUMBER', - 'ASCN.MINOR_COPY_NUMBER', - 'ASCN.CCF_EXPECTED_COPIES', - 'ASCN.CCF_EXPECTED_COPIES_UPPER', - 'ASCN.CLONAL', - 'ASCN.EXPECTED_ALT_COPIES' - ] - - # Used for mapping column names to the corresponding function that does a check on the value. - CHECK_FUNCTION_MAP = { - 'Matched_Norm_Sample_Barcode':'checkMatchedNormSampleBarcode', - 'NCBI_Build':'checkNCBIbuild', - 'Verification_Status':'checkVerificationStatus', - 'Validation_Status':'checkValidationStatus', - 't_alt_count':'check_t_alt_count', - 't_ref_count':'check_t_ref_count', - 'n_alt_count':'check_n_alt_count', - 'n_ref_count':'check_n_ref_count', - 'Tumor_Sample_Barcode': 'checkNotBlank', - 'Hugo_Symbol': 'checkNotBlank', - 'HGVSp_Short': 'checkAminoAcidChange', - 'Amino_Acid_Change': 'checkAminoAcidChange', - 'Variant_Classification': 'checkVariantClassification', - 'SWISSPROT': 'checkSwissProt', - 'Start_Position': 'checkStartPosition', - 'End_Position': 'checkEndPosition', - 'Mutation_Status': 'checkMutationStatus' - } - - def __init__(self, *args, **kwargs): - super(MutationsExtendedValidator, self).__init__(*args, **kwargs) - self.extraCols = [] - - def checkHeader(self, cols): - """Validate header, requiring at least one gene id column.""" - num_errors = super(MutationsExtendedValidator, self).checkHeader(cols) - - if not 'SWISSPROT' in cols: - self.logger.warning( - 'Including the SWISSPROT column is recommended to make sure ' - 'that the UniProt canonical isoform is used when drawing Pfam ' - 'domains in the mutations view', - extra={'line_number': self.line_number}) - elif not 'swissprot_identifier' in self.meta_dict: - self.logger.warning( - "A SWISSPROT column was found in datafile without specifying " - "associated 'swissprot_identifier' in metafile, assuming " - "'swissprot_identifier: name'.", - extra={'column_number': cols.index('SWISSPROT') + 1}) - - # one of these columns should be present: - if not ('HGVSp_Short' in cols or 'Amino_Acid_Change' in cols): - self.logger.error('At least one of the columns HGVSp_Short or ' - 'Amino_Acid_Change needs to be present.', - extra={'line_number': self.line_number}) - num_errors += 1 - - namespaces = [] - missing_ascn_columns = [] - ascn_namespace_defined = False - if 'namespaces' in self.meta_dict: - namespaces = self.meta_dict['namespaces'].split(',') - for namespace in namespaces: - if 'ascn' == namespace.strip().lower(): - ascn_namespace_defined = True - - if ascn_namespace_defined: - for required_ascn_column in self.REQUIRED_ASCN_COLUMNS: - if required_ascn_column not in cols: - missing_ascn_columns.append(required_ascn_column) - if len(missing_ascn_columns) > 0: - self.logger.error('ASCN namespace defined but MAF ' - 'missing required ASCN columns. ' - 'Missing %s' % (','.join(missing_ascn_columns))) - num_errors += 1 - - return num_errors - - def checkLine(self, data): - - """Each value in each line is checked individually. - - From the column name (stored in self.cols), the - corresponding function to check the value is selected from - CHECK_FUNCTION_MAP. Will emit a generic warning - message if this function returns False. If the function sets - self.extra_exists to True, self.extra will be used in this - message. - """ - super(MutationsExtendedValidator, self).checkLine(data) - if self.skipValidation(data): - return - self.checkAlleleMAFFormat(data) - self.checkAlleleSpecialCases(data) - self.checkValidationColumns(data) - - for col_index, col_name in enumerate(self.cols): - # validate the column if there's a function defined for it - try: - check_function_name = self.CHECK_FUNCTION_MAP[col_name] - except KeyError: - pass - else: - col_index = self.cols.index(col_name) - value = data[col_index] - # get the checking method for this column - checking_function = getattr(self, check_function_name) - if not checking_function(value): - self.printDataInvalidStatement(value, col_index) - elif self.extra_exists or self.extra: - raise RuntimeError(('Checking function %s set an error ' - 'message but reported no error') % - checking_function.__name__) - - # validate Tumor_Sample_Barcode value to make sure it exists in clinical sample list: - sample_id_column_index = self.cols.index('Tumor_Sample_Barcode') - sample_id = data[sample_id_column_index] - self.checkSampleId(sample_id, column_number=sample_id_column_index + 1) - - # Keep track of all sample IDs in the mutation data file - mutation_file_sample_ids.add(sample_id) - - # parse hugo and entrez to validate them together - hugo_symbol = None - entrez_id = None - if 'Hugo_Symbol' in self.cols: - hugo_symbol = data[self.cols.index('Hugo_Symbol')].strip() - # treat the empty string or 'Unknown' as a missing value - if hugo_symbol in ('NA', '', 'Unknown'): - hugo_symbol = None - if 'Entrez_Gene_Id' in self.cols: - entrez_id = data[self.cols.index('Entrez_Gene_Id')].strip() - # treat the empty string or 0 as a missing value - if entrez_id in ('NA', '', '0'): - entrez_id = None - # validate hugo and entrez together: - normalized_gene = self.checkGeneIdentification(hugo_symbol, entrez_id) - - # validate the gene to make sure its from the targeted panel - if normalized_gene and self.portal.gene_panel_list and data[sample_id_column_index] in sample_ids_panel_dict: - panel_id = sample_ids_panel_dict[data[sample_id_column_index]] - if panel_id in self.portal.gene_panel_list and panel_id != 'NA': - self.checkOffPanelVariant(data, normalized_gene, panel_id, hugo_symbol, entrez_id) - - - # check if a non-blank amino acid change exists for non-splice sites - if ('Variant_Classification' not in self.cols or - data[self.cols.index('Variant_Classification')] not in ( - 'Splice_Site', )): - aachange_value_found = False - for aa_col in ('HGVSp_Short', 'Amino_Acid_Change'): - if (aa_col in self.cols and - data[self.cols.index(aa_col)] not in - self.NULL_AA_CHANGE_VALUES): - aachange_value_found = True - if not aachange_value_found: - self.logger.warning( - 'No Amino_Acid_Change or HGVSp_Short value. This ' - 'mutation record will get a generic "MUTATED" flag', - extra={'line_number': self.line_number}) - - # Report non-supported 'HGVSp_Short' with more than 255 characters. - if 'HGVSp_Short' in self.cols: - if len(data[self.cols.index('HGVSp_Short')]) > 255: - self.logger.error( - 'cBioPortal does not support values longer than 255 ' - 'characters in "HGVSp_Short"', - extra={'line_number': self.line_number}) - - # If strict mode is enforced, log message from mutation checks should be error, - # otherwise warning - def send_log_message(self, strict_maf_checks, log_message, extra_dict): - if not strict_maf_checks: - self.logger.warning(log_message, extra=extra_dict) - else: - self.logger.error(log_message, extra=extra_dict) - - - def checkAlleleMAFFormat(self, data): - """ - Check Start_Position and End_Position against Variant_Type (according to MAF file checks #6, #10 and #11: - https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification) - """ - - necessary_columns_check6 = ['Reference_Allele', 'Tumor_Seq_Allele1', 'Tumor_Seq_Allele2'] - necessary_columns_check10 = ['Start_Position', 'End_Position'] - necessary_columns_check11 = ['Variant_Type'] + necessary_columns_check6 + necessary_columns_check10 - - if set(necessary_columns_check6).issubset(self.cols): - ref_allele = data[self.cols.index('Reference_Allele')].strip() - tumor_seq_allele1 = data[self.cols.index('Tumor_Seq_Allele1')].strip() - tumor_seq_allele2 = data[self.cols.index('Tumor_Seq_Allele2')].strip() - if set(necessary_columns_check10).issubset(self.cols): - # Set positions to False if position are empty, so checks will not be performed - if data[self.cols.index('Start_Position')].strip() == '' or data[self.cols.index('Start_Position')] == 'NA' or data[self.cols.index('End_Position')].strip() == '' or data[self.cols.index('End_Position')] == 'NA': - positions = False - else: - positions = True - start_pos = float(data[self.cols.index('Start_Position')].strip('\'').strip('\"')) - end_pos = float(data[self.cols.index('End_Position')].strip('\'').strip('\"')) - if 'Variant_Type' in self.cols: - variant_type = data[self.cols.index('Variant_Type')].strip() - - # MAF file check #6 (for now only Reference_Allele, Tumor_Seq_Allele1 and Tumor_Seq_Allele2) - if set(necessary_columns_check6).issubset(self.cols): - - # Check if Allele columms only contain the following values: -,A,C,T,G - legal_values = ["-", "A", "C", "T", "G"] - illegal_values_ref = [value for value in list(ref_allele) if value not in legal_values] - illegal_values_tumor1 = [value for value in list(tumor_seq_allele1) if value not in legal_values] - illegal_values_tumor2 = [value for value in list(tumor_seq_allele2) if value not in legal_values] - - # Else return an error message - if len(illegal_values_ref) > 0 and len(illegal_values_tumor1) > 0 and len(illegal_values_tumor2) > 0: - log_message = "All Allele Based columns contain invalid character." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - elif len(illegal_values_ref) > 0: - log_message = "Allele Based column Reference_Allele contains invalid character." - extra_dict = {'line_number': self.line_number, 'cause': ref_allele} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - elif len(illegal_values_tumor1) > 0: - log_message = "Allele Based column Tumor_Seq_Allele1 contains invalid character." - extra_dict = {'line_number': self.line_number, 'cause': tumor_seq_allele1} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - elif len(illegal_values_tumor2) > 0: - log_message = "Allele Based column Tumor_Seq_Allele2 contains invalid character." - extra_dict = {'line_number': self.line_number, 'cause': tumor_seq_allele2} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # MAF file check #10: Check if Start_Position is equal or smaller than End_Position - if set(necessary_columns_check10).issubset(self.cols) and positions: - if not (start_pos <= end_pos): - log_message = "Start_Position should be smaller than or equal to End_Position." - extra_dict = {'line_number': self.line_number, 'cause': '(%s, %s)' % (start_pos, end_pos)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # MAF file check #11: Check Start_Position and End_Position against Variant_Type - if set(necessary_columns_check11).issubset(self.cols): - - if variant_type == "INS": - # Start and End Position should be the same as length reference allele or equal 1 - # and length of Reference_Allele should be equal or smaller than the Tumor_Seq_Allele1 or 2, - # otherwise no insertion, but deletion - if positions: - if not (((end_pos - start_pos + 1) == len(ref_allele)) or ((end_pos - start_pos) == 1)): - log_message = "Variant_Type indicates insertion, but difference in Start_Position and " \ - "End_Position does not equal to 1 or the length or the Reference_Allele." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (start_pos, end_pos, ref_allele)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - if not ((len(ref_allele) <= len(tumor_seq_allele1)) or (len(ref_allele) <= len(tumor_seq_allele2))): - log_message = "Variant_Type indicates insertion, but length of Reference_Allele is bigger than " \ - "the length of the Tumor_Seq_Allele1 and/or 2 and therefore indicates deletion." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - if variant_type == "DEL": - # The difference between Start_Position and End_Position for a DEL should be equal to the length - # of the Reference_Allele - if positions: - if not ((end_pos - start_pos + 1) == len(ref_allele)): - log_message = "Variant_Type indicates deletion, but the difference between Start_Position and " \ - "End_Position are not equal to the length of the Reference_Allele." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (start_pos, end_pos, ref_allele)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # The length of the Reference_Allele should be bigger than of the Tumor_Seq_Alleles for a DEL - if len(ref_allele) < len(tumor_seq_allele1) or len(ref_allele) < len(tumor_seq_allele2): - log_message = "Variant_Type indicates deletion, but length of Reference_Allele is smaller than " \ - "the length of Tumor_Seq_Allele1 and/or Tumor_Seq_Allele2, indicating an insertion." - extra_dict ={'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - if variant_type == "SNP": - # Expect alleles to have length 2 when variant type is SNP - if not (len(ref_allele) == 1 and len(tumor_seq_allele1) == 1 and len(tumor_seq_allele2) == 1): - log_message = "Variant_Type indicates a SNP, but length of Reference_Allele, Tumor_Seq_Allele1 " \ - "and/or Tumor_Seq_Allele2 do not equal 1." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - if variant_type == "DNP": - # Expect alleles to have length 2 when variant type is DNP - if not (len(ref_allele) == 2 and len(tumor_seq_allele1) == 2 and len(tumor_seq_allele2) == 2): - log_message = "Variant_Type indicates a DNP, but length of Reference_Allele, Tumor_Seq_Allele1 " \ - "and/or Tumor_Seq_Allele2 do not equal 2." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - if variant_type == "TNP": - # Expect alleles to have length 3 when variant type is TNP - if not (len(ref_allele) == 3 and len(tumor_seq_allele1) == 3 and len(tumor_seq_allele2) == 3): - log_message = "Variant_Type indicates a TNP, but length of Reference_Allele, Tumor_Seq_Allele1 " \ - "and/or Tumor_Seq_Allele2 do not equal 3." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - if variant_type == "ONP": - # Expect alleles to have length >3 when variant type is ONP and are of equal length - if (len(ref_allele) != len(tumor_seq_allele1) or len(tumor_seq_allele1) != len(tumor_seq_allele2))\ - or (len(ref_allele) <= 3 and len(tumor_seq_allele1) <= 3 and len(tumor_seq_allele2) <= 3): - log_message = "Variant_Type indicates a ONP, but length of Reference_Allele, " \ - "Tumor_Seq_Allele1 and 2 are not bigger than 3 or are of unequal lengths." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - # Following variant types cannot contain a deletion in the Allele columns - if variant_type == "SNP" or variant_type == "DNP" or variant_type == "TNP" or variant_type == "ONP": - if ("-" in ref_allele) or ("-" in tumor_seq_allele1) or ("-" in tumor_seq_allele2): - log_message = "Variant_Type indicates a %s, but Reference_Allele, Tumor_Seq_Allele1 " \ - "and/or Tumor_Seq_Allele2 contain deletion (-)." % variant_type - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - return True - - def checkAlleleSpecialCases(self, data): - """ Check other special cases which should or should not occur in Allele Based columns - Special cases are either from unofficial vcf2maf rules or discrepancies identified. """ - - # First check if columns necessary exist in the data - necessary_columns = ['Reference_Allele', 'Tumor_Seq_Allele1', 'Tumor_Seq_Allele2', 'Variant_Type'] - if set(necessary_columns).issubset(self.cols): - ref_allele = data[self.cols.index('Reference_Allele')].strip() - tumor_seq_allele1 = data[self.cols.index('Tumor_Seq_Allele1')].strip() - tumor_seq_allele2 = data[self.cols.index('Tumor_Seq_Allele2')].strip() - variant_type = data[self.cols.index('Variant_Type')].strip() - - # Check if Allele Based columns are not all the same - if ref_allele == tumor_seq_allele1 and tumor_seq_allele1 == tumor_seq_allele2: - log_message = "All Values in columns Reference_Allele, Tumor_Seq_Allele1 " \ - "and Tumor_Seq_Allele2 are equal." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # In case of deletion, check when Reference_Allele is the same length as both Tumor_Seq_Allele if at least - # one of the Tumor_Seq_Alleles is a deletion ('-') otherwise a SNP - if variant_type == "DEL" and len(ref_allele) == len(tumor_seq_allele1) \ - and len(ref_allele) == len(tumor_seq_allele2) and "-" not in tumor_seq_allele1 \ - and "-" not in tumor_seq_allele2: - log_message = "Variant_Type indicates a deletion, Allele based columns are the same length, " \ - "but Tumor_Seq_Allele columns do not contain -, indicating a SNP." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s)' % (ref_allele, tumor_seq_allele1, tumor_seq_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - return True - - def checkValidationColumns(self, data): - """ - Perform MAF file check #7,#8, #9 and #13 for the Validation columns: - https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification) - """ - - # Set variables for the different checks - necessary_columns_check7and8 = ['Validation_Status', 'Tumor_Validation_Allele1', 'Tumor_Validation_Allele2', - 'Match_Norm_Validation_Allele1', 'Match_Norm_Validation_Allele2'] - necessary_columns_check13 = ['Validation_Status', 'Validation_Method'] - necessary_columns_check9 = ['Mutation_Status', 'Reference_Allele'] + necessary_columns_check7and8 - - if set(necessary_columns_check7and8).issubset(self.cols): - validation_status = data[self.cols.index('Validation_Status')].strip().lower() - tumor_allele1 = data[self.cols.index('Tumor_Validation_Allele1')].strip() - tumor_allele2 = data[self.cols.index('Tumor_Validation_Allele2')].strip() - norm_allele1 = data[self.cols.index('Match_Norm_Validation_Allele1')].strip() - norm_allele2 = data[self.cols.index('Match_Norm_Validation_Allele2')].strip() - if set(necessary_columns_check13).issubset(self.cols): - validation_status = data[self.cols.index('Validation_Status')].strip().lower() - validation_method = data[self.cols.index('Validation_Method')].strip().lower() - if 'Mutation_Status' in self.cols and 'Reference_Allele' in self.cols: - mutation_status = data[self.cols.index('Mutation_Status')].strip().lower() - ref_allele = data[self.cols.index('Reference_Allele')].strip() - - # Check #7 and #8: When validation status is valid or invalid the Validation_Allele columns cannot be null - if set(necessary_columns_check7and8).issubset(self.cols): - - if validation_status == "valid" or validation_status == "invalid": - legal_allele_values = ['-', 'A', 'C', 'T', 'G'] - illegal_values_tumor1 = [value for value in list(tumor_allele1) if value not in legal_allele_values] - illegal_values_tumor2 = [value for value in list(tumor_allele2) if value not in legal_allele_values] - illegal_values_norm1 = [value for value in list(norm_allele1) if value not in legal_allele_values] - illegal_values_norm2 = [value for value in list(norm_allele2) if value not in legal_allele_values] - - # Check if Allele Columns are not empty ('' or 'NA') when Validation_Status is valid or invalid - if tumor_allele1 in ['', 'NA'] or tumor_allele2 in ['', 'NA'] or norm_allele1 in ['', 'NA'] \ - or norm_allele2 in ['', 'NA']: - log_message = "Validation Status is %s, but Validation Allele columns are empty." \ - % validation_status - extra_dict = {'line_number': self.line_number} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # Check when Allele Columns are not empty if the Allele Based columns contain either -,A,C,T,G - elif len(illegal_values_tumor1) > 0 or len(illegal_values_tumor2) > 0 \ - or len(illegal_values_norm1) > 0 or len(illegal_values_norm2) > 0: - log_message = "At least one of the Validation Allele Based columns (Tumor_Validation_Allele1, " \ - "Tumor_Validation_Allele2, Match_Norm_Validation_Allele1, " \ - "Match_Norm_Validation_Allele2) contains invalid character." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s, %s)' % (tumor_allele1, tumor_allele2, - norm_allele1, norm_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # And in case of invalid also checks if validation alleles from tumor and normal match - elif validation_status == "invalid" \ - and (tumor_allele1 != norm_allele1 or tumor_allele2 != norm_allele2): - log_message = "When Validation_Status is invalid the Tumor_Validation_Allele " \ - "and Match_Norm_Validation_Allele columns should be equal." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s, %s)' % (tumor_allele1, tumor_allele2, - norm_allele1, norm_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - - # Check #13: When Validation_Status is valid or invalid the Validation_Method column cannot be None. - if set(necessary_columns_check13).issubset(self.cols): - if validation_status == "valid" or validation_status == "invalid": - if validation_method == "none" or validation_method == "na": - log_message = "Validation Status is %s, but Validation_Method is not defined." % validation_status - extra_dict = {'line_number': self.line_number} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - - # Check #9: Check Validation_Status against Mutation_Status - if set(necessary_columns_check9).issubset(self.cols): - - # If Mutation_Status is Germline and Validation_Status is valid then the Tumor_Validation_Allele should be - # equal to the matched Norm_Validation_Allele - if mutation_status == "germline" and validation_status == "valid": - if tumor_allele1 != norm_allele1 or tumor_allele2 != norm_allele2: - log_message = "When Validation_Status is valid and Mutation_Status is Germline, the " \ - "Tumor_Validation_Allele should be equal to the Match_Norm_Validation_Allele." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s, %s)' % (tumor_allele1, tumor_allele2, - norm_allele1, norm_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # When Mutation_Status is Somatic and Validation_Status is valid the Norm_Validation Alleles should be equal - # to the reference alleles and the Tumor_Validation_Alleles should be different from the Reference_Allele - elif mutation_status == "somatic" and validation_status == "valid": - if (norm_allele1 != norm_allele2 or norm_allele2 != ref_allele) and \ - (tumor_allele1 != ref_allele or tumor_allele2 != ref_allele): - log_message = "When Validation_Status is valid and Mutation_Status is Somatic, the " \ - "Match_Norm_Validation_Allele columns should be equal to the Reference Allele and " \ - "one of the Tumor_Validation_Allele columns should not be." - extra_dict = {'line_number': self.line_number, - 'cause': '(%s, %s, %s, %s)' % (tumor_allele1, tumor_allele2, - norm_allele1, norm_allele2)} - self.send_log_message(self.strict_maf_checks, log_message, extra_dict) - - # If for LOH (9C) not implemented, because mutation will not be loaded in cBioPortal - - return True - - def checkOffPanelVariant(self, data, normalized_gene, panel_id, hugo_symbol, entrez_id): - try: - normalized_gene = int(normalized_gene) - except: - pass - if normalized_gene not in self.portal.gene_panel_list[panel_id]: - if hugo_symbol: - self.logger.warning( - 'Off panel variant. Gene symbol not known to the targeted panel.', - extra={'line_number': self.line_number, - 'cause': hugo_symbol}) - else: - self.logger.warning( - 'Off panel variant. Gene symbol is not provided and Entrez gene id not known to the targeted panel.', - extra={'line_number': self.line_number, - 'cause': entrez_id}) - - # These functions check values of the MAF according to their name. - # The mapping of which function checks which value is a global value - # at the top of the script. If any other checks need to be added for - # another field name, add the map in the global corresponding to - # the function name that is created to check it. - - - def checkNCBIbuild(self, value): - """ - Checks whether the value found in MAF NCBI_Build column matches the genome specified in portal.properties at - field ncbi.build. Expecting GRCh37, GRCh38, GRCm38 or without the GRCx prefix - """ - - if value != '': - prefix = 'GRCm' if self.portal.species == 'mouse' else 'GRCh' - if str(value) in ('37', '38'): - value = prefix + str(value) - if value != str(self.portal.ncbi_build): - self.extra = 'The reference genome in column NCBI_Build does not correspond with the ' \ - 'reference genome specified for this study (%s)' % (self.portal.ncbi_build) - self.extra_exists = True - return False - return True - - def checkMatchedNormSampleBarcode(self, value): - if value != '': - if 'normal_samples_list' in self.meta_dict and self.meta_dict['normal_samples_list'] != '': - normal_samples_list = [x.strip() for x in self.meta_dict['normal_samples_list'].split(',')] - if value not in normal_samples_list: - self.extra = "Normal sample id not in list of sample ids configured in corresponding metafile. " \ - "Please check your metafile field 'normal_samples_list'." - self.extra_exists = True - return False - return True - - - def checkVerificationStatus(self, value): - # if value is not blank, then it should be one of these: - if self.checkNotBlank(value) and value.lower() not in ('verified', 'unknown', 'na'): - # Giving only warning instead of error because not used in front end. - self.logger.warning( - "Value in 'Verification_Status' not in MAF format", - extra={'line_number': self.line_number, - 'cause':value}) - # return without error (just warning above) - return True - return True - - def checkValidationStatus(self, value): - # if value is not blank, then it should be one of these: - if self.checkNotBlank(value) and value.lower() not in ('untested', 'inconclusive', - 'valid', 'invalid', 'na', 'redacted', 'unknown'): - # Giving only warning instead of error because front end can handle unofficial values. - self.logger.warning( - "Value in 'Validation_Status' not in MAF format", - extra={'line_number': self.line_number, - 'cause':value}) - # return without error (just warning above) - return True - return True - - def check_t_alt_count(self, value): - if not self.checkInt(value) and value not in ('', '.'): - return False - return True - - def check_t_ref_count(self, value): - if not self.checkInt(value) and value not in ('', '.'): - return False - return True - - def check_n_alt_count(self, value): - if not self.checkInt(value) and value not in ('', '.'): - return False - return True - - def check_n_ref_count(self, value): - if not self.checkInt(value) and value not in ('', '.'): - return False - return True - - def checkAminoAcidChange(self, value): - """Test whether a string is a valid amino acid change specification.""" - # TODO implement this test more properly, - # may require bundling the hgvs package: - # https://pypi.python.org/pypi/hgvs/ - if value not in self.NULL_AA_CHANGE_VALUES: - value = value.strip() - # there should only be a 'p.' prefix at the very start - if len(value) > 1 and 'p.' in value[1:]: - # return with an error message - self.extra = ("Unexpected 'p.' within amino acid change, " - "only one variant can be listed on each line") - self.extra_exists = True - return False - # lines in this format are single mutations, so the haplotype - # syntax supported by HGVS strings is not applicable - if ';' in value: - # return with an error message - self.extra = ("Unexpected ';' in amino acid change, " - "multi-variant allele notation is not supported") - self.extra_exists = True - return False - # commas are not allowed. They are used internally in certain - # servlets, via GeneticAlterationUtil.getMutationMap(). - if ',' in value: - # return with an error message - self.extra = 'Comma in amino acid change' - self.extra_exists = True - return False - return True - - def skipValidation(self, data): - """Test whether the mutation is silent and should be skipped.""" - is_silent = False - variant_classification = data[self.cols.index('Variant_Classification')] - if 'variant_classification_filter' in self.meta_dict: - self.SKIP_VARIANT_TYPES = [x.strip() - for x - in self.meta_dict['variant_classification_filter'].split(',')] - - hugo_symbol = data[self.cols.index('Hugo_Symbol')] - entrez_id = '0' - if 'Entrez_Gene_Id' in self.cols: - entrez_id = data[self.cols.index('Entrez_Gene_Id')] - if hugo_symbol == 'Unknown' and entrez_id == '0': - is_silent = True - if variant_classification in ['IGR', 'Targeted_Region']: - self.logger.info("This variant (Gene symbol 'Unknown', Entrez gene ID 0) will be filtered out", - extra={'line_number': self.line_number, - 'cause': variant_classification}) - else: - # the MAF specification documents the use of Unknown and 0 here - # for intergenic mutations, and since the Variant_Classification - # column is often invalid, cBioPortal interprets this combination - # (or just the symbol if the Entrez column is absent) as such, - # but with a warning: - self.logger.warning( - "Gene specification (Gene symbol 'Unknown', Entrez gene ID 0) for this variant " - "implies intergenic even though Variant_Classification is " - "not 'IGR' or 'Targeted_Region'; this variant will be filtered out", - extra={'line_number': self.line_number, - 'cause': variant_classification}) - elif variant_classification in self.SKIP_VARIANT_TYPES: - self.logger.info("Line will not be loaded due to the variant " - "classification filter. Filtered types: [%s]", - ', '.join(self.SKIP_VARIANT_TYPES), - extra={'line_number': self.line_number, - 'cause': variant_classification}) - is_silent = True - - return is_silent - - def checkNotBlank(self, value): - """Test whether a string is blank.""" - if value is None or value.strip() == '': - return False - return True - - def checkVariantClassification(self, value): - """Validate according to MAF standard list and give warning when value is not recognized.""" - #if blank, return False: - if not self.checkNotBlank(value): - return False - else: - # check whether value conforms to MAF list of values, give warning otherwise: - if value not in self.VARIANT_CLASSIFICATION_VALUES: - self.logger.warning( - 'Given value for Variant_Classification column is not one of the expected values. This ' - 'can result in mapping issues and subsequent missing features in the mutation view UI, ' - 'such as missing COSMIC information.', - extra={'line_number': self.line_number, - 'cause':value}) - # return without error (just warning above) - return True - # if no reasons to return with a message were found, return valid - return True - - def checkSwissProt(self, value): - """Validate the name or accession in the SWISSPROT column.""" - if value is None or value.strip() in ['', 'NA', '[Not Available]']: - self.logger.warning( - 'Missing value in SWISSPROT column; this column is ' - 'recommended to make sure that the UniProt canonical isoform ' - 'is used when drawing Pfam domains in the mutations view.', - extra={'line_number': self.line_number, - 'cause':value}) - # no value to test, return without error - return True - if self.meta_dict.get('swissprot_identifier', 'name') == 'accession': - if not re.match( - # regex from http://www.uniprot.org/help/accession_numbers - r'^([OPQ][0-9][A-Z0-9]{3}[0-9]|' - r'[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2})$', - value): - # Return this as a warning. The cBioPortal front-end currently (1.13.2) does not use the SWISSPROT - # column for the Mutation Tab. It retrieves SWISSPROT accession and name based on Entrez Gene Id - self.logger.warning('SWISSPROT value is not a (single) UniProtKB accession. ' - 'Loader will try to find UniProtKB accession using Entrez gene id or ' - 'gene symbol.', - extra={'line_number': self.line_number, 'cause': value}) - return True - else: - # format described on http://www.uniprot.org/help/entry_name - if not re.match( - r'^[A-Z0-9]{1,5}_[A-Z0-9]{1,5}$', - value): - # if there is a ',' then give a more detailed message: - if ',' in value: - self.logger.warning('SWISSPROT value is not a single UniProtKB/Swiss-Prot name. ' - 'Found multiple separated by a `,`. ' - 'Loader will try to find UniProtKB accession using Entrez gene id or ' - 'gene symbol.', - extra={'line_number': self.line_number, 'cause': value}) - else: - self.logger.warning('SWISSPROT value is not a (single) UniProtKB/Swiss-Prot name. ' - 'Loader will try to find UniProtKB accession using Entrez gene id or ' - 'gene symbol.', - extra={'line_number': self.line_number, 'cause': value}) - return True - # if no reasons to return with a message were found, return valid - return True - - def checkStartPosition(self, value): - """Check that the Start_Position value is an integer.""" - if value.strip() == '' or value == 'NA': - self.logger.warning( - 'The start position of this variant is not ' - 'defined. The chromosome plot in the patient view ' - 'will not be displayed correctly for this variant.', - extra={'line_number': self.line_number, - 'column_number': self.cols.index('Start_Position'), - 'cause': value}) - elif value.isdigit() == False or (value.isdigit() and '.' in value): - self.logger.error( - 'The start position of this variant is not ' - 'an integer', - extra={'line_number': self.line_number, - 'column_number': self.cols.index('Start_Position'), - 'cause': value}) - # if no reasons to return with a message were found, return valid - return True - - def checkEndPosition(self, value): - """Check that the End_Position value is an integer.""" - if value.strip() == '' or value == 'NA': - self.logger.warning( - 'The end position of this variant is not ' - 'defined. The chromosome plot in the patient view ' - 'will not be displayed correctly for this variant.', - extra={'line_number': self.line_number, - 'column_number': self.cols.index('End_Position'), - 'cause': value}) - elif value.isdigit() == False or (value.isdigit() and '.' in value): - self.logger.error( - 'The end position of this variant is not ' - 'an integer', - extra={'line_number': self.line_number, - 'column_number': self.cols.index('End_Position'), - 'cause': value}) - # if no reasons to return with a message were found, return valid - return True - - def checkMutationStatus(self, value): - """Check values in mutation status column.""" - if value.lower() in ['loh', 'none', 'wildtype']: - self.logger.info('Mutation will not be loaded due to value in Mutation_Status', - extra={'line_number': self.line_number, 'cause': value}) - if value.lower() not in ['none', 'germline', 'somatic', 'loh', 'post-transcriptional modification', 'unknown', 'wildtype'] and value != '': - self.logger.warning('Mutation_Status value is not in MAF format', - extra={'line_number': self.line_number, 'cause': value}) - return True - -class ClinicalValidator(Validator): - - """Abstract Validator class for clinical data files. - - Subclasses define the columns that must be present in REQUIRED_HEADERS, - and the value of the 'is_patient_attribute' property for attributes - defined in this file in PROP_IS_PATIENT_ATTRIBUTE. - """ - - REQUIRE_COLUMN_ORDER = False - PROP_IS_PATIENT_ATTRIBUTE = None - NULL_VALUES = ["[not applicable]", "[not available]", "[pending]", "[discrepancy]", "[completed]", "[null]", "", "na"] - ALLOW_BLANKS = True - METADATA_LINES = ('display_name', - 'description', - 'datatype', - 'priority') - - # A core set of attributes must be either specific in the patient or sample clinical data. - # See GET /api/ at http://oncotree.mskcc.org/cdd/swagger-ui.html#/ - PREDEFINED_ATTRIBUTES = { - 'AGE': { - 'is_patient_attribute': '1', - 'datatype': 'NUMBER' - }, - 'CANCER_TYPE': { - 'datatype': 'STRING' - }, - 'CANCER_TYPE_DETAILED': { - 'datatype': 'STRING' - }, - 'DFS_STATUS': { - 'is_patient_attribute': '1', - 'datatype': 'STRING' - }, - 'DFS_MONTHS': { - 'is_patient_attribute': '1', - 'datatype': 'NUMBER' - }, - 'DRIVER_MUTATIONS': { - }, - 'ERG_FUSION_ACGH': { - }, - 'ETS_RAF_SPINK1_STATUS': { - }, - 'GENDER': { - 'is_patient_attribute': '1', - 'datatype': 'STRING' - }, - 'GLEASON_SCORE': { - }, - 'HISTOLOGY': { - 'datatype': 'STRING', - }, - 'KNOWN_MOLECULAR_CLASSIFIER': { - 'datatype': 'STRING', - }, - 'METASTATIC_SITE': { - 'is_patient_attribute': '0', - 'datatype': 'STRING', - }, - 'MOUSE_STRAIN': { - }, - 'OS_STATUS': { - 'is_patient_attribute': '1', - 'datatype': 'STRING' - }, - 'OS_MONTHS': { - 'is_patient_attribute': '1', - 'datatype': 'NUMBER' - }, - 'OTHER_SAMPLE_ID': { - 'is_patient_attribute': '0', - 'datatype': 'STRING' - }, - 'PATIENT_DISPLAY_NAME': { - 'is_patient_attribute': '1', - 'datatype': 'STRING' - }, - 'PRIMARY_SITE': { - 'is_patient_attribute': '0', - 'datatype': 'STRING', - }, - 'SAMPLE_CLASS': { - 'is_patient_attribute': '0', - 'datatype': 'STRING' - }, - 'SAMPLE_DISPLAY_NAME': { - 'is_patient_attribute': '0', - 'datatype': 'STRING' - }, - 'SAMPLE_TYPE': { - 'is_patient_attribute': '0', - 'datatype': 'STRING' - }, - 'SERUM_PSA': { - }, - 'SEX': { - 'is_patient_attribute': '1', - 'datatype': 'STRING' - }, - 'TMPRSS2_ERG_FUSION_STATUS': { - }, - 'TUMOR_GRADE': { - }, - 'TUMOR_SITE': { - 'is_patient_attribute': '1', - 'datatype': 'STRING', - }, - 'TUMOR_STAGE_2009': { - }, - 'TUMOR_TISSUE_SITE': { - 'is_patient_attribute': '0', - 'datatype': 'STRING', - }, - 'TUMOR_TYPE': { - 'is_patient_attribute': '0', - 'datatype': 'STRING' - }, - } - INVALID_ID_CHARACTERS = r'[^A-Za-z0-9._-]' - BANNED_ATTRIBUTES = ['MUTATION_COUNT', 'FRACTION_GENOME_ALTERED'] - - def __init__(self, *args, **kwargs): - """Initialize the instance attributes of the data file validator.""" - super(ClinicalValidator, self).__init__(*args, **kwargs) - self.attr_defs = [] - self.defined_attributes = set() - - def processTopLines(self, line_list): - - """Parse the attribute definitions above the column header.""" - - if not line_list: - if not self.relaxed_mode: - self.logger.warning( - 'No data type definition headers found in clinical data file', - extra={'line_number': self.line_number}) - else: - self.logger.info('Ignoring missing or invalid data type definition ' - ' headers. Continuing with validation...') - return False - - if len(line_list) != len(self.METADATA_LINES): - self.logger.error( - '%d comment lines at start of clinical data file, expected %d', - len(line_list), - len(self.METADATA_LINES)) - return False - - # remove the # signs - line_list = [line[1:] for line in line_list] - - attr_defs = None - num_attrs = 0 - csvreader = csv.reader(line_list, - delimiter='\t', - quoting=csv.QUOTE_NONE, - strict=True) - invalid_values = False - for line_index, row in enumerate(csvreader): - - if attr_defs is None: - # make a list of as many dictionaries as there are columns - num_attrs = len(row) - attr_defs = [OrderedDict() for i in range(num_attrs)] - elif len(row) != num_attrs: - if not self.relaxed_mode: - self.logger.error( - 'Varying numbers of columns in clinical header (%d, %d)', - num_attrs, - len(row), - extra={'line_number': line_index + 1}) - return False - - for col_index, value in enumerate(row): - - # test for invalid values in these columns - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Empty %s field in clinical attribute definition', - self.METADATA_LINES[line_index], - extra={'line_number': line_index + 1, - 'column_number': col_index + 1, - 'cause': value}) - invalid_values = True - if self.METADATA_LINES[line_index] in ('display_name', - 'description'): - pass - elif self.METADATA_LINES[line_index] == 'datatype': - VALID_DATATYPES = ('STRING', 'NUMBER', 'BOOLEAN') - if value not in VALID_DATATYPES: - self.logger.error( - 'Invalid data type definition, must be one of ' - '[%s]', - ', '.join(VALID_DATATYPES), - extra={'line_number': line_index + 1, - 'colum_number': col_index + 1, - 'cause': value}) - invalid_values = True - invalid_values = True - elif self.METADATA_LINES[line_index] == 'priority': - try: - if int(value) < -1: - raise ValueError() - except ValueError: - self.logger.error( - 'Priority definition should be an integer, and should be ' - 'greater than or equal to -1', - extra={'line_number': line_index + 1, - 'column_number': col_index + 1, - 'cause': value}) - invalid_values = True - else: - if not self.relaxed_mode: - raise RuntimeError('Unknown clinical header line name') - - attr_defs[col_index][self.METADATA_LINES[line_index]] = value - - self.attr_defs = attr_defs - return not invalid_values - - def checkHeader(self, cols): - - """Validate the attributes defined in the column headers and above.""" - - num_errors = super(ClinicalValidator, self).checkHeader(cols) - - if self.numCols != len(self.attr_defs): - if not self.relaxed_mode: - self.logger.error( - 'Varying numbers of columns in clinical header (%d, %d)', - len(self.attr_defs), - len(self.cols), - extra={'line_number': self.line_number}) - num_errors += 1 - - # fill in missing attr_defs data if in relaxed mode and clinical data is headerless - if self.fill_in_attr_defs: - self.logger.info('Filling in missing attribute properties for clinical data.') - missing_attr_defs = {} - for col_index, col_name in enumerate(cols): - missing_attr_defs[col_index] = {'display_name': col_name, - 'description': col_name, - 'datatype': 'STRING', - 'priority': '1'} - self.attr_defs = missing_attr_defs - - for col_index, col_name in enumerate(self.cols): - # Front end can have issues with lower case attribute names as discussed - # in https://github.com/cBioPortal/cbioportal/issues/3518 - if not col_name.isupper(): - self.logger.error( - "Attribute name not in upper case.", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': col_name}) - # do not check the special ID columns as attributes, - # just parse them with the correct data type - if col_name in ('PATIENT_ID', 'SAMPLE_ID'): - self.attr_defs[col_index] = {'display_name': '', - 'description': '', - 'datatype': 'STRING', - 'priority': '0'} - continue - # check predefined (hard-coded) attribute definitions - if col_name in self.PREDEFINED_ATTRIBUTES: - for attr_property in self.PREDEFINED_ATTRIBUTES[col_name]: - if attr_property == 'is_patient_attribute': - expected_level = self.PREDEFINED_ATTRIBUTES[col_name][attr_property] - if self.PROP_IS_PATIENT_ATTRIBUTE != expected_level: - self.logger.error( - 'Attribute must to be a %s-level attribute', - {'0': 'sample', '1': 'patient'}[expected_level], - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': col_name}) - # check pre-header datatype property: - if attr_property == 'datatype': - # check pre-header metadata if applicable -- if these were - # found missing or unparseable, `relaxed mode' has made - # validation continue assuming all attributes to be - # unformatted strings - if not self.fill_in_attr_defs: - value = self.attr_defs[col_index][attr_property] - expected_value = \ - self.PREDEFINED_ATTRIBUTES[col_name][attr_property] - if (value != expected_value and - not self.fill_in_attr_defs): - self.logger.error( - "%s definition for attribute '%s' must be %s", - attr_property, - col_name, - expected_value, - extra={'line_number': - self.METADATA_LINES.index( - attr_property) + 1, - 'column_number': col_index + 1, - 'cause': value}) - - # Check for banned column names - if col_name in self.BANNED_ATTRIBUTES: - self.logger.error( - "%s is not allowed in data. MUTATION_COUNT and FRACTION_GENOME_ALTERED are calculated in cBioPortal" - "", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': col_name}) - - self.defined_attributes.add(col_name) - return num_errors - - def checkLine(self, data): - """Check the values in a line of data.""" - super(ClinicalValidator, self).checkLine(data) - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - data_type = self.attr_defs[col_index]['datatype'] - - # if not blank, check if values match the datatype - if value.strip().lower() in self.NULL_VALUES: - pass - elif data_type == 'NUMBER': - if not self.checkFloat(value): - if (value[0] in ('>','<')) and value[1:].isdigit(): - pass - else: - self.logger.error( - 'Value of numeric attribute is not a real number', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'column_name': col_name, - 'cause': value}) - elif data_type == 'BOOLEAN': - VALID_BOOLEANS = ('TRUE', 'FALSE') - if not value in VALID_BOOLEANS: - self.logger.error( - 'Value of boolean attribute must be one of [%s]', - ', '.join(VALID_BOOLEANS), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'column_name': col_name, - 'cause': value}) - # make sure that PATIENT_ID is present - if col_name == 'PATIENT_ID': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing PATIENT_ID', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - if col_name == 'PATIENT_ID' or col_name == 'SAMPLE_ID': - if re.findall(self.INVALID_ID_CHARACTERS, value): - self.logger.error( - 'PATIENT_ID and SAMPLE_ID can only contain letters, ' - 'numbers, points, underscores and/or hyphens', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - # Scan for incorrect usage of dates, accidentally converted by excel. This is often in a format such as - # Jan-99 or 20-Oct. A future improvement would be to add a "DATE" datatype. - excel_months = ["jan", "feb", "mar", "apr", "may", "jun", "jul", "aug", "sep", "oct", "nov", "dec"] - if 'date' not in col_name.lower(): - if '-' in value: - if len(value.split('-')) == 2 and not any(i in value for i in [',', '.', ':', ';']): - if any(value_part.lower() in excel_months for value_part in value.split('-')): - self.logger.error( - 'Date found when no date was expected. Please check if values are accidentally ' - 'converted to dates by Excel. If this data is correct, add "DATE" to column name', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - - -class SampleClinicalValidator(ClinicalValidator): - - """Validator for files defining and setting sample-level attributes.""" - - REQUIRED_HEADERS = ['SAMPLE_ID', 'PATIENT_ID'] - PROP_IS_PATIENT_ATTRIBUTE = '0' - - - def __init__(self, *args, **kwargs): - """Initialize the validator to track sample ids defined.""" - super(SampleClinicalValidator, self).__init__(*args, **kwargs) - self.sample_id_lines = {} - self.sampleIds = self.sample_id_lines.keys() - self.patient_ids = set() - - def checkLine(self, data): - """Check the values in a line of data.""" - super(SampleClinicalValidator, self).checkLine(data) - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - if col_name == 'SAMPLE_ID': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing SAMPLE_ID', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - continue - if len(value.strip()) > MAX_SAMPLE_STABLE_ID_LENGTH: - self.logger.error( - 'SAMPLE_ID too long (%s character maximum)' % (MAX_SAMPLE_STABLE_ID_LENGTH), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - continue - - if value in self.sample_id_lines: - if value.startswith('TCGA-'): - self.logger.warning( - 'TCGA sample defined twice in clinical file, this ' - 'line will be ignored assuming truncated barcodes', - extra={ - 'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': '%s (already defined on line %d)' % ( - value, - self.sample_id_lines[value])}) - else: - self.logger.error( - 'Sample defined twice in clinical file', - extra={ - 'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': '%s (already defined on line %d)' % ( - value, - self.sample_id_lines[value])}) - else: - self.sample_id_lines[value] = self.line_number - elif col_name == 'PATIENT_ID': - self.patient_ids.add(value) - # TODO: check the values in the other documented columns - - -class PatientClinicalValidator(ClinicalValidator): - - """Validator for files defining and setting patient-level attributes.""" - - REQUIRED_HEADERS = ['PATIENT_ID'] - PROP_IS_PATIENT_ATTRIBUTE = '1' - - def __init__(self, *args, **kwargs): - """Initialize the validator to track patient IDs referenced.""" - super(PatientClinicalValidator, self).__init__(*args, **kwargs) - self.patient_id_lines = {} - - def checkHeader(self, cols): - """Validate headers in patient-specific clinical data files.""" - num_errors = super(PatientClinicalValidator, self).checkHeader(cols) - # do not allow the SAMPLE_ID column in this file - if 'SAMPLE_ID' in self.cols: - self.logger.error( - 'SAMPLE_ID column found in a patient attribute file', - extra={'line_number': self.line_number, - 'column_number': self.cols.index('SAMPLE_ID'), - 'cause': 'SAMPLE_ID'}) - # refuse to define attributes also defined in the sample-level file - for attribute_id in self.defined_attributes: - if attribute_id in DEFINED_SAMPLE_ATTRIBUTES: - # log this as a file-aspecific error, using the base logger - self.logger.logger.error( - 'Clinical attribute is defined both as sample-level and ' - 'as patient-level', - extra={'cause': attribute_id}) - # warnings about missing optional columns - if 'OS_MONTHS' not in self.cols or 'OS_STATUS' not in self.cols: - self.logger.warning( - 'Columns OS_MONTHS and/or OS_STATUS not found. Overall ' - 'survival analysis feature will not be available for this ' - 'study.') - if 'DFS_MONTHS' not in self.cols or 'DFS_STATUS' not in self.cols: - self.logger.warning( - 'Columns DFS_MONTHS and/or DFS_STATUS not found. Disease ' - 'free analysis feature will not be available for this study.') - return num_errors - - def checkLine(self, data): - """Check the values in a line of data.""" - super(PatientClinicalValidator, self).checkLine(data) - osstatus_is_deceased = False - osmonths_value = None - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - if col_name == 'PATIENT_ID': - if value in self.patient_id_lines: - self.logger.error( - 'Patient defined multiple times in file', - extra={ - 'line_number': self.line_number, - 'column_number': self.cols.index('PATIENT_ID') + 1, - 'cause': '%s (already defined on line %d)' % ( - value, - self.patient_id_lines[value])}) - else: - self.patient_id_lines[value] = self.line_number - if value not in PATIENTS_WITH_SAMPLES: - self.logger.warning( - 'Clinical data defined for a patient with ' - 'no samples', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif col_name == 'OS_STATUS': - if value == '1:DECEASED': - osstatus_is_deceased = True - elif (value.lower() not in self.NULL_VALUES and - value not in ('LIVING', 'DECEASED', '0:LIVING', '1:DECEASED')): - self.logger.error( - 'Value in OS_STATUS column is not LIVING, 0:LIVING, DECEASED or' - '1:DECEASED', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif col_name == 'DFS_STATUS': - if (value.lower() not in self.NULL_VALUES and - value not in ('0:DiseaseFree', - '1:Recurred/Progressed', - '1:Recurred', - '1:Progressed', - 'DiseaseFree', - 'Recurred/Progressed', - 'Recurred', - 'Progressed')): - self.logger.error( - 'Value in DFS_STATUS column is not 0:DiseaseFree, ' - '1:Recurred/Progressed, 1:Recurred, 1:Progressed', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif col_name == 'OS_MONTHS': - osmonths_value = value - # check other survival data - elif col_name.endswith('_STATUS'): - # get survival attribute prefix - survival_prefix = col_name[:len(col_name) - 7] - if (survival_prefix + '_MONTHS') in self.cols: - # attribute that has both _months and _status is a survival attribute - # this attribute should have prefix "0:" or "1:", or NULL_VALUES - splited_value = value.lower().split(':') - if len(splited_value) <= 1 or len(splited_value) >= 2 and splited_value[0] not in ('0', '1'): - if value.lower() not in self.NULL_VALUES: - self.logger.error( - 'Value in %s column should be formated like "0:LIVING" (status:lable) ', - col_name, - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - if osstatus_is_deceased and ( - osmonths_value is None or - osmonths_value.lower() in self.NULL_VALUES): - if osmonths_value is None or osmonths_value == '': - osmonths_value = '' - self.logger.warning( - 'OS_MONTHS is not specified for deceased patient. Patient ' - 'will be excluded from survival curve and month of death ' - 'will not be shown on patient view timeline.', - extra={'line_number': self.line_number, - 'cause': osmonths_value}) - - def onComplete(self): - """Perform final validations based on the data parsed.""" - for patient_id in PATIENTS_WITH_SAMPLES: - if patient_id not in self.patient_id_lines: - self.logger.warning( - 'Missing clinical data for a patient associated with ' - 'samples', - extra={'cause': patient_id}) - super(PatientClinicalValidator, self).onComplete() - - -class SegValidator(Validator): - """Validator for .seg files.""" - - REQUIRED_HEADERS = [ - 'ID', - 'chrom', - 'loc.start', - 'loc.end', - 'num.mark', - 'seg.mean'] - REQUIRE_COLUMN_ORDER = True - - def __init__(self, *args, **kwargs): - """Initialize validator to track coverage of the genome.""" - super(SegValidator, self).__init__(*args, **kwargs) - self.chromosome_lengths = self.load_chromosome_lengths( - self.meta_dict['reference_genome_id'], - self.logger.logger) - # add 23 and 24 "chromosomes" as aliases to X and Y, respectively: - self.chromosome_lengths['23'] = self.chromosome_lengths['X'] - self.chromosome_lengths['24'] = self.chromosome_lengths['Y'] - - def checkLine(self, data): - super(SegValidator, self).checkLine(data) - - parsed_coords = {} - for col_index, col_name in enumerate(self.cols): - value = data[col_index].strip() - if col_name == 'ID': - self.checkSampleId(value, column_number=col_index + 1) - elif col_name == 'chrom': - if value in self.chromosome_lengths: - parsed_coords[col_name] = value - else: - self.logger.error( - ('Unknown chromosome, must be one of (%s)' % - '|'.join(list(self.chromosome_lengths.keys()))), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif col_name in ('loc.start', 'loc.end'): - try: - # convert possible scientific notation to python scientific notation - if "e+" in value: - value = float(value.replace("e+", "e")) - if not value.is_integer(): - # raise value error 'Genomic position is not an integer' - raise ValueError() - parsed_coords[col_name] = int(value) - except ValueError: - self.logger.error( - 'Genomic position is not an integer', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - # skip further validation specific to this column - continue - # 0 is the first base, and loc.end is not part of the segment - # 'chrom' has already been read, as column order is fixed - if parsed_coords[col_name] < 0 or ( - 'chrom' in parsed_coords and - parsed_coords[col_name] > self.chromosome_lengths[ - parsed_coords['chrom']]): - self.logger.error( - 'Genomic position beyond end of chromosome ' - '(chr%s:0-%s)', - parsed_coords['chrom'], - self.chromosome_lengths[parsed_coords['chrom']], - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - # not a valid coordinate usable in further validations - del parsed_coords[col_name] - elif col_name == 'num.mark': - if not self.checkInt(value): - # also check if the value is an int in scientific notation (1e+05) - if not ("e+" in value and self.checkFloat(value)): - self.logger.error( - 'Number of probes is not an integer', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif col_name == 'seg.mean': - if not self.checkFloat(value): - self.logger.error( - 'Mean segment copy number is not a number', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - else: - raise RuntimeError('Could not validate column type: ' + - col_name) - - if 'loc.start' in parsed_coords and 'loc.end' in parsed_coords: - # the convention for genomic coordinates (at least at UCSC) is that - # the chromosome starts at 0 and end positions are excluded. - # see also https://groups.google.com/forum/#!topic/igv-help/LjffjxPul2M - if parsed_coords['loc.start'] == parsed_coords['loc.end']: - self.logger.warning( - 'Segment is zero bases wide and will not be loaded', - extra={'line_number': self.line_number, - 'cause': '{}-{}'.format(parsed_coords['loc.start'], - parsed_coords['loc.end'])}) - elif parsed_coords['loc.start'] > parsed_coords['loc.end']: - self.logger.error( - 'Start position of segment is greater than end position', - extra={'line_number': self.line_number, - 'cause': '{}-{}'.format(parsed_coords['loc.start'], - parsed_coords['loc.end'])}) - - # TODO check for overlap and low genome coverage - # this could be implemented by sorting the segments for a patient - # by (chromosome and) start position and checking if the start position - # of each segment comes after the end position of the previous one, - # meanwhile adding up the number of (non-overlapping) bases covered on - # that chromosome in that patient. - -class StructuralVariantValidator(CustomNamespacesValidator): - - """Basic validation for structural variant data. Validates: - - 1. Required column headers - 2. Gene IDs - 3. If there is a second gene, also validate Gene IDs of second gene - """ - - REQUIRED_HEADERS = [ - 'Sample_Id', - 'SV_Status', - ] - REQUIRE_COLUMN_ORDER = False - ALLOW_BLANKS = True - - UNIQUENESS_COLUMNS = [ - 'Sample_Id', - 'Site1_Hugo_Symbol', - 'Site1_Entrez_Gene_Id', - 'Site1_Chromosome', - 'Site1_Position', - 'Site1_Region_Number', - 'Site1_Ensembl_Transcript_Id', - 'Site2_Hugo_Symbol', - 'Site2_Entrez_Gene_Id', - 'Site2_Chromosome', - 'Site2_Position', - 'Site2_Region_Number', - 'Site2_Ensembl_Transcript_Id', - 'Event_Info'] - - # TODO: Revive the support to validate the events based on transcripts and exons - once the new visualization features (UI for fusion tab, breakpoint visualization) are added to front-end. - - def __init__(self, *args, **kwargs): - super(StructuralVariantValidator, self).__init__(*args, **kwargs) - self.sv_entries = {} - self.ncbi_build = None - self.unique_fields = [] - self.other_required_genomic_fields = ['Site1_Region', 'Site2_Region', 'Site1_Contig', 'Site2_Contig'] - self.missing_genomic_fields = [] - - def checkHeader(self, data): - num_errors = super(StructuralVariantValidator, self).checkHeader(data) - - # Check presence of gene - if not ('Site1_Hugo_Symbol' in self.cols or 'Site1_Entrez_Gene_Id' in self.cols): - self.logger.error('Structural variant event requires Site1_Entrez_Gene_Id and/or Site1_Hugo_Symbol column', - extra={'line_number': self.line_number}) - num_errors += 1 - - # Check second gene column - if not ('Site2_Hugo_Symbol' in self.cols or 'Site2_Entrez_Gene_Id' in self.cols): - self.logger.error('Structural variant event requires Site2_Entrez_Gene_Id and/or Site2_Hugo_Symbol column', - extra={'line_number': self.line_number}) - num_errors += 1 - - # Check the columns to define the uniqueness of SV records - # Report the missing genomic fields - for value in self.UNIQUENESS_COLUMNS: - if value in self.cols: - self.unique_fields.append(value) - else: - self.missing_genomic_fields.append(value) - - self.missing_genomic_fields.extend([value for value in self.other_required_genomic_fields if value not in self.cols]) - - if len(self.missing_genomic_fields) > 1: - self.logger.warning('Missing genomic information. Consider' - ' adding the fields: [%s]', ', '.join(sorted(self.missing_genomic_fields)), - extra={'line_number': self.line_number}) - - return num_errors - - def checkLine(self, data): - super(StructuralVariantValidator, self).checkLine(data) - - # Check whether a value is present or not available - def checkPresenceValue(column_name, self, data): - column_value = None - if column_name in self.cols: - column_value = data[self.cols.index(column_name)].strip() - # Treat the empty string or 'NA' as a missing value - if column_value in ['', 'NA', 'Unknown', '0']: - column_value = None - return column_value - - def checkNCBIbuild(ncbi_build): - if ncbi_build is None: - self.logger.warning('No value in NCBI_Build, assuming GRCh37 is the assembly', - extra={'line_number': self.line_number}) - else: - # Check NCBI build - if not ncbi_build.lower() in ['grch37', 'grch38']: - self.logger.error('Only GRCh37 and GRCh38 are supported', - extra={'line_number': self.line_number, - 'cause': ncbi_build}) - # Check if multiple NCBI builds are found in 1 file - if self.ncbi_build is None: - self.ncbi_build = ncbi_build - else: - if str(self.ncbi_build) != str(ncbi_build): - self.logger.error('Multiple values in NCBI_Build found, this is not supported', - extra={'line_number': self.line_number, - 'cause': '%s and %s' % (self.ncbi_build, ncbi_build)}) - - def checkSVstatus(sv_status): - """ Allowed values for SV_Status column are SOMATIC and GERMLINE """ - if sv_status is None: - self.logger.warning('No value in SV_Status, assuming the variant is SOMATIC', - extra={'line_number': self.line_number}) - else: - if not sv_status.lower() in ['somatic', 'germline']: - self.logger.error('Invalid SV_Status value: possible values are [SOMATIC, GERMLINE]', - extra={'line_number': self.line_number, - 'cause': sv_status}) - - # Check SV_Status - sv_status = checkPresenceValue('SV_Status', self, data) - checkSVstatus(sv_status) - - # Check NCBI build - if 'NCBI_Build' in self.cols: - ncbi_build = checkPresenceValue('NCBI_Build', self, data) - checkNCBIbuild(ncbi_build) - else: - self.logger.warning('No column NCBI_Build, assuming GRCh37 is the assembly', - extra={'line_number': self.line_number}) - - # Check whether sample ID is in clinical sample IDs - sample_id = checkPresenceValue('Sample_Id', self, data) - self.checkSampleId(sample_id, column_number = self.cols.index('Sample_Id') + 1) - - # Parse Hugo Symbol and Entrez Gene Id and check them for Site 1 - site1_hugo_symbol = checkPresenceValue('Site1_Hugo_Symbol', self, data) - site1_entrez_gene_id = checkPresenceValue('Site1_Entrez_Gene_Id', self, data) - site1_gene = self.checkGeneIdentification(site1_hugo_symbol, site1_entrez_gene_id, 'SV') - - # Parse Hugo Symbol and Entrez Gene Id and check them for Site 2 - site2_hugo_symbol = checkPresenceValue('Site2_Hugo_Symbol', self, data) - site2_entrez_gene_id = checkPresenceValue('Site2_Entrez_Gene_Id', self, data) - site2_gene = self.checkGeneIdentification(site2_hugo_symbol, site2_entrez_gene_id, 'SV') - - # Check whether at least one of the Site1 or Site2 is valid. - if site1_gene is None and site2_gene is None: - # Check if the Site1 and Site2 Hugo Symbols or Entrez Gene Ids have been left empty or not - # If they are defined, but the gene is none, it means they are not included in the db so - # we need to throw a warning rather than an error. - non_recognized_genes = [] - if site1_hugo_symbol is not None: - non_recognized_genes += [site1_hugo_symbol] - elif site1_entrez_gene_id is not None: - non_recognized_genes += [site1_entrez_gene_id] - elif site2_hugo_symbol is not None: - non_recognized_genes += [site2_hugo_symbol] - elif site2_entrez_gene_id is not None: - non_recognized_genes += [site2_entrez_gene_id] - if len(non_recognized_genes) > 0: - self.logger.warning( - 'All Entrez Gene Ids and Gene Symbols provided for site 1 and site 2 are not known to the cBioPortal instance. ' \ - 'This record will not be loaded.;', - extra={'line_number': self.line_number, 'cause': ", ".join(non_recognized_genes) }) - else: #Explicit empty Entrez Gene Ids and Gene Symbols in Site1 and Site2 - self.logger.error( - 'No Entrez gene id or gene symbol provided for site 1 and site 2', - extra={'line_number': self.line_number}) - elif site1_gene is None and site2_gene is not None: - self.logger.info( - 'No Entrez gene id or gene symbol provided for site 1. ' - 'Assuming either the intragenic, deletion, duplication, translocation or inversion variant', - extra={'line_number': self.line_number}) - elif site2_gene is None and site1_gene is not None: - self.logger.info( - 'No Entrez gene id or gene symbol provided for site 2. ' - 'Assuming either the intragenic, deletion, duplication, translocation or inversion variant', - extra={'line_number': self.line_number}) - - # validate the uniqueness of SV records - sv_entry = "\t".join([data[self.cols.index(attr)] for attr in self.unique_fields]) - if sv_entry in self.sv_entries: - self.logger.error( - 'Duplicate entry in structural variant data', - extra = {'line_number': self.line_number, - 'cause': '%s (already defined on line %d)' % ( - sv_entry, - self.sv_entries[sv_entry])}) - else: - self.sv_entries[sv_entry] = self.line_number - - - def onComplete(self): - # End validation of this data type by running the super function - super(StructuralVariantValidator, self).onComplete() - - -class MutationSignificanceValidator(Validator): - - # TODO add checks for mutsig files - ALLOW_BLANKS = True - pass - - -class GenePanelMatrixValidator(Validator): - """Validation for gene panel matrix file. - """ - - REQUIRED_HEADERS = ['SAMPLE_ID'] - - def __init__(self, *args, **kwargs): - """Initialize a GenePanelMatrixValidator with the given parameters.""" - super(GenePanelMatrixValidator, self).__init__(*args, **kwargs) - self.mutation_profile_column = None - self.gene_panel_sample_ids = {} - self.mutation_stable_id_index = None - - def checkHeader(self, data): - num_errors = super(GenePanelMatrixValidator, self).checkHeader(data) - - stable_ids = study_meta_dictionary.keys() - property_in_meta_file_list = [] - mutation_stable_id = '' - - for genetic_profile in study_meta_dictionary: - # Extract the mutation stable ID from the study meta dictionary - if study_meta_dictionary[genetic_profile]['genetic_alteration_type'] == 'MUTATION_EXTENDED' and \ - study_meta_dictionary[genetic_profile]['datatype'] == 'MAF' and \ - study_meta_dictionary[genetic_profile]['stable_id'] in data: - mutation_stable_id = study_meta_dictionary[genetic_profile]['stable_id'] - self.mutation_stable_id_index = data.index(mutation_stable_id) - - # Extract the stable IDs for genetic profiles that use the gene_panel property - if 'gene_panel' in study_meta_dictionary[genetic_profile]: - property_in_meta_file_list.append(study_meta_dictionary[genetic_profile]['stable_id']) - - # Check whether the stable IDs match the stable IDs from the meta files - for stable_id in data: - if stable_id != 'SAMPLE_ID': - if stable_id not in stable_ids: - self.logger.error('Stable ID not found in study meta files', - extra={'cause': stable_id}) - num_errors += 1 - - if stable_id != mutation_stable_id: - if stable_id in property_in_meta_file_list: - self.logger.error("The meta file for this genetic profile contains a property for gene panel. " - "This functionality is mutually exclusive with including a column for this " - "genetic profile in the gene panel matrix. Please remove either the property " - "in the meta file or the column in gene the panel matrix file", - extra={'line_number': self.line_number, - 'cause': stable_id}) - else: - self.logger.info("This column can be replaced by a 'gene_panel' property in the respective " - "meta file", - extra={'line_number': self.line_number, - 'cause': stable_id}) - return num_errors - - def checkLine(self, data): - super(GenePanelMatrixValidator, self).checkLine(data) - - # Check whether sample ID is duplicated - sample_id = data.pop(self.cols.index('SAMPLE_ID')) - if sample_id in self.gene_panel_sample_ids: - self.logger.error( - 'Duplicated Sample ID.', - extra={'line_number': self.line_number, - 'cause': '%s (already defined on line %d)' - % (sample_id, self.gene_panel_sample_ids[sample_id])}) - else: - # Add sample ID to check for duplicates - self.gene_panel_sample_ids[sample_id] = self.line_number - - # Check whether sample ID is in clinical sample IDs - self.checkSampleId(sample_id, self.cols.index('SAMPLE_ID')) - - # If stable id is mutation and value not NA, check whether sample ID is in sequenced case list - if self.mutation_stable_id_index is not None: - sample_ids_panel_dict[sample_id] = data[self.mutation_stable_id_index - 1] - # Sample ID has been removed from list, so subtract 1 position. - if data[self.mutation_stable_id_index - 1] != 'NA': - if sample_id not in mutation_sample_ids: - self.logger.error('Sample ID has mutation gene panel, but is not in the sequenced case list', - extra={'line_number': self.line_number, - 'cause': sample_id}) - - # Check whether gene panel stable ids are in the database - if self.portal.gene_panel_list is not None: - for gene_panel_id in data: - if gene_panel_id not in self.portal.gene_panel_list and gene_panel_id not in ['NA','WGS','WXS','WXS/WGS']: - self.logger.error('Gene panel ID is not in database. Please import this gene panel before loading ' - 'study data.', - extra={'line_number': self.line_number, - 'cause': gene_panel_id}) - - -class ProteinLevelValidator(FeaturewiseFileValidator): - - REQUIRED_HEADERS = ['Composite.Element.REF'] - ALLOW_BLANKS = True - NULL_VALUES = ["NA"] - - def parseFeatureColumns(self, nonsample_col_vals): - """Check the IDs in the first column.""" - # the ID consists of a space-separated list of gene symbols and/or - # Entrez identifiers, separated by a pipe symbol from the name of the - # antibody probe used to detect these genes. The values on the line - # will be loaded for each gene in the list, or for fictional genes that - # encode specific phosphorylated versions of the genes' protein - # products if the antibody name has a particular format. - value = nonsample_col_vals[0].strip() - if '|' not in value: - self.logger.error('No pipe symbol in Composite.Element.REF column', - extra={'line_number': self.line_number, - 'column_number': 1, - 'cause': nonsample_col_vals[0]}) - return None - symbol_element, antibody = value.split('|', 1) - symbol_list = symbol_element.split(' ') - for symbol in symbol_list: - entrez_id = None - if symbol.strip() == 'NA': - self.logger.warning( - 'Gene symbol NA will be ignored, assuming Not Available', - extra={'line_number': self.line_number, - 'column_number': 1, - 'cause': nonsample_col_vals[0]}) - elif self.checkInt(symbol): - self.checkGeneIdentification(entrez_id=symbol) - else: - self.checkGeneIdentification(gene_symbol=symbol) - # TODO: return a value for (this phospo-version of) each gene - return antibody - - def checkValue(self, value, col_index): - """Check a value in a sample column.""" - stripped_value = value.strip() - if stripped_value not in self.NULL_VALUES and not self.checkFloat(stripped_value): - self.logger.error("Value is neither a real number nor " + ', '.join(self.NULL_VALUES), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - def checkId(self): - return self.checkIdInSamples() - - -class TimelineValidator(Validator): - - REQUIRED_HEADERS = [ - 'PATIENT_ID', - 'START_DATE', - 'STOP_DATE', - 'EVENT_TYPE'] - REQUIRE_COLUMN_ORDER = True - ALLOW_BLANKS = True - - def checkLine(self, data): - super(TimelineValidator, self).checkLine(data) - # TODO check the values - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - if col_name == 'START_DATE': - if not value.strip().lstrip('-').isdigit(): - self.logger.error( - 'Invalid START_DATE', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif col_name == 'STYLE_COLOR': - if not COLOR_REGEX.match(value.strip()): - self.logger.error( - 'Invalid STYLE_COLOR', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif col_name == 'STYLE_SHAPE': - if not value.strip().lower() in ['circle', 'square', 'triangle', 'diamond', 'star', 'camera']: - self.logger.error( - 'Invalid STYLE_SHAPE', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - -class CancerTypeValidator(Validator): - - """Validator for tab-separated cancer type definition files.""" - - REQUIRED_HEADERS = [] - REQUIRE_COLUMN_ORDER = True - # check this in the subclass to avoid emitting an error twice - ALLOW_BLANKS = True - - COLS = ( - 'type_of_cancer', - 'name', - 'color', - 'parent_type_of_cancer' - ) - - def __init__(self, *args, **kwargs): - """Initialize a file validator with a defined_cancer_types field.""" - super(CancerTypeValidator, self).__init__(*args, **kwargs) - self.cols = self.__class__.COLS - self.numCols = len(self.cols) - self.defined_cancer_types = [] - - def checkHeader(self, cols): - """Check the first uncommented line just like any other data line.""" - self.checkLine(cols) - # the number of 'header errors' that break TSV parsing is always zero - return 0 - - def checkLine(self, data): - """Check a data line in a cancer type file.""" - # track whether any errors are emitted while validating this line - tracking_handler = MaxLevelTrackingHandler() - self.logger.logger.addHandler(tracking_handler) - try: - super(CancerTypeValidator, self).checkLine(data) - if len(data) != 4: - self.logger.error('Lines in cancer type files must have these ' - '4 columns, in order: [%s]', - ', '.join(self.cols), - extra={'line_number': self.line_number, - 'cause': '<%d columns>' % len(data)}) - # no assumptions can be made about the meaning of each column - return - line_cancer_type = data[self.cols.index('type_of_cancer')].lower().strip() - # check each column - for col_index, field_name in enumerate(self.cols): - value = data[col_index].strip() - if value == '': - self.logger.error( - "Blank value in '%s' column", - field_name, - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif field_name == 'color': - # validate whether the color field is one of the - # keywords on https://www.w3.org/TR/css3-color/#svg-color - if value.lower() not in [ - 'aliceblue', 'antiquewhite', 'aqua', 'aquamarine', - 'azure', 'beige', 'bisque', 'black', - 'blanchedalmond', 'blue', 'blueviolet', 'brown', - 'burlywood', 'cadetblue', 'chartreuse', 'chocolate', - 'coral', 'cornflowerblue', 'cornsilk', 'crimson', - 'cyan', 'darkblue', 'darkcyan', 'darkgoldenrod', - 'darkgray', 'darkgreen', 'darkgrey', 'darkkhaki', - 'darkmagenta', 'darkolivegreen', 'darkorange', - 'darkorchid', 'darkred', 'darksalmon', - 'darkseagreen', 'darkslateblue', 'darkslategray', - 'darkslategrey', 'darkturquoise', 'darkviolet', - 'deeppink', 'deepskyblue', 'dimgray', 'dimgrey', - 'dodgerblue', 'firebrick', 'floralwhite', - 'forestgreen', 'fuchsia', 'gainsboro', 'ghostwhite', - 'gold', 'goldenrod', 'gray', 'green', 'greenyellow', - 'grey', 'honeydew', 'hotpink', 'indianred', - 'indigo', 'ivory', 'khaki', 'lavender', - 'lavenderblush', 'lawngreen', 'lemonchiffon', - 'lightblue', 'lightcoral', 'lightcyan', - 'lightgoldenrodyellow', 'lightgray', 'lightgreen', - 'lightgrey', 'lightpink', 'lightsalmon', - 'lightseagreen', 'lightskyblue', 'lightslategray', - 'lightslategrey', 'lightsteelblue', 'lightyellow', - 'lime', 'limegreen', 'linen', 'magenta', 'maroon', - 'mediumaquamarine', 'mediumblue', 'mediumorchid', - 'mediumpurple', 'mediumseagreen', 'mediumslateblue', - 'mediumspringgreen', 'mediumturquoise', - 'mediumvioletred', 'midnightblue', 'mintcream', - 'mistyrose', 'moccasin', 'navajowhite', 'navy', - 'oldlace', 'olive', 'olivedrab', 'orange', - 'orangered', 'orchid', 'palegoldenrod', 'palegreen', - 'paleturquoise', 'palevioletred', 'papayawhip', - 'peachpuff', 'peru', 'pink', 'plum', 'powderblue', - 'purple', 'red', 'rosybrown', 'royalblue', - 'saddlebrown', 'salmon', 'sandybrown', 'seagreen', - 'seashell', 'sienna', 'silver', 'skyblue', - 'slateblue', 'slategray', 'slategrey', 'snow', - 'springgreen', 'steelblue', 'tan', 'teal', - 'thistle', 'tomato', 'turquoise', 'violet', 'wheat', - 'white', 'whitesmoke', 'yellow', 'yellowgreen', - 'rebeccapurple']: - self.logger.error( - 'Color field is not a CSS3 color keyword, ' - 'see the table on https://en.wikipedia.org/wiki/Web_colors#X11_color_names', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif field_name == 'parent_type_of_cancer': - parent_cancer_type = value.lower() - # if parent_cancer_type is not 'tissue' (which is a special case when building the oncotree), - # then give error if the given parent is not found in the DB or in the given cancer types of the - # current study: - if (parent_cancer_type != 'tissue' and - self.portal.cancer_type_dict is not None and not - (parent_cancer_type in self.portal.cancer_type_dict or - parent_cancer_type in self.defined_cancer_types)): - self.logger.error( - "Unknown parent for cancer type '%s'", - line_cancer_type, - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - # check for duplicated (possibly inconsistent) cancer types - if line_cancer_type in self.defined_cancer_types: - self.logger.error( - 'Cancer type defined a second time in this file', - extra={'line_number': self.line_number, - 'cause': line_cancer_type}) - # compare the cancer_type definition with the portal instance - if (self.portal.cancer_type_dict is not None and - line_cancer_type in self.portal.cancer_type_dict): - existing_info = self.portal.cancer_type_dict[line_cancer_type] - # depending on version, the API may not return this field - if 'short_name' in existing_info: - if existing_info['short_name'].lower() != line_cancer_type: - self.logger.error( - "Attempting to validate against invalid cancer type " - "in portal: short name '%s' does not match id '%s'", - existing_info['short_name'], - line_cancer_type, - extra={'line_number': self.line_number}) - return - for col_index, field_name in enumerate(self.cols): - value = data[col_index] - # this field is loaded into the database in lowercase - if field_name == 'parent_type_of_cancer': - value = value.lower() - if ( - field_name in existing_info and - value != existing_info[field_name]): - self.logger.error( - "'%s' field of cancer type '%s' does not match " - "the portal, '%s' expected", - field_name, - line_cancer_type, - existing_info[field_name], - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif self.portal.cancer_type_dict is not None: - self.logger.info( - 'New disease type will be added to the portal', - extra={'line_number': self.line_number, - 'cause': line_cancer_type}) - # if no errors have been emitted while validating this line - if tracking_handler.max_level < logging.ERROR: - # add the cancer type defined on this line to the list - self.defined_cancer_types.append(line_cancer_type) - finally: - self.logger.logger.removeHandler(tracking_handler) - -class ResourceDefinitionValidator(Validator): - # 'RESOURCE_ID', 'RESOURCE_TYPE', 'DISPLAY_NAME' are required - REQUIRE_COLUMN_ORDER = False - REQUIRED_HEADERS = ['RESOURCE_ID', 'RESOURCE_TYPE', 'DISPLAY_NAME'] - NULL_VALUES = ["[not applicable]", "[not available]", "[pending]", "[discrepancy]", "[completed]", "[null]", "", "na"] - RESOURCE_TYPES = ["SAMPLE", "PATIENT", "STUDY"] - ALLOW_BLANKS = True - - def __init__(self, *args, **kwargs): - """Initialize a ResourceDefinitionValidator with the given parameters.""" - super(ResourceDefinitionValidator, self).__init__(*args, **kwargs) - self.resource_definition_dictionary = {} - - def checkLine(self, data): - """Check the values in a line of data.""" - super(ResourceDefinitionValidator, self).checkLine(data) - resource_id = '' - resource_type = '' - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - - # make sure that RESOURCE_ID is present - if col_name == 'RESOURCE_ID': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing RESOURCE_ID', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - else: - resource_id = value - - # make sure that RESOURCE_TYPE is present and correct - if col_name == 'RESOURCE_TYPE': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing RESOURCE_TYPE', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - elif value.strip() not in self.RESOURCE_TYPES: - self.logger.error( - 'RESOURCE_TYPE is not one of the following : SAMPLE, PATIENT or STUDY', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - else: - resource_type = value - - # make sure that DISPLAY_NAME is present - if col_name == 'DISPLAY_NAME': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing DISPLAY_NAME', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - # pass for other null columns - if value.strip().lower() in self.NULL_VALUES: - pass - - # validate if OPEN_BY_DEFAULT and priority are correct - if col_name == 'OPEN_BY_DEFAULT': - if not (value.strip().lower() == 'true' or value.strip().lower() == 'false'): - self.logger.error( - 'wrong value of OPEN_BY_DEFAULT, should be true or false', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - if col_name == 'PRIORITY': - try: - int(value.strip()) - except ValueError: - self.logger.error( - 'wrong value of PRIORITY, the value should be integer', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - # add resource_id into dictionary - self.resource_definition_dictionary.setdefault(resource_id, []).append(resource_type) - -class ResourceValidator(Validator): - - """Abstract Validator class for resource data files. - - Subclasses define the columns that must be present in REQUIRED_HEADERS. - """ - - REQUIRE_COLUMN_ORDER = False - NULL_VALUES = ["[not applicable]", "[not available]", "[pending]", "[discrepancy]", "[completed]", "[null]", "", "na"] - ALLOW_BLANKS = True - - INVALID_ID_CHARACTERS = r'[^A-Za-z0-9._-]' - - def __init__(self, *args, **kwargs): - """Initialize the instance attributes of the data file validator.""" - super(ResourceValidator, self).__init__(*args, **kwargs) - - def url_validator(self, url): - try: - result = urlparse(url) - return all([result.scheme, result.netloc]) - except: - return False - - def checkLine(self, data): - """Check the values in a line of data.""" - super(ResourceValidator, self).checkLine(data) - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - - # make sure that RESOURCE_ID is present - if col_name == 'RESOURCE_ID': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing RESOURCE_ID', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - # make sure that RESOURCE_ID is defined in the resource definition file - if value not in RESOURCE_DEFINITION_DICTIONARY: - self.logger.error( - 'RESOURCE_ID is not defined in resource definition file', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - # if not blank, check if values match the datatype - if value.strip().lower() in self.NULL_VALUES: - pass - - if col_name == 'URL': - # value should be a url - # Characters that affect netloc parsing under NFKC normalization will raise ValueError - if self.url_validator(value.strip()): - pass - else: - self.logger.error( - 'Value of resource is not an url, url should start with http or https', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'column_name': col_name, - 'cause': value}) - # make sure that PATIENT_ID is present - if col_name == 'PATIENT_ID': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing PATIENT_ID', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - if col_name == 'PATIENT_ID' or col_name == 'SAMPLE_ID': - if re.findall(self.INVALID_ID_CHARACTERS, value): - self.logger.error( - 'PATIENT_ID and SAMPLE_ID can only contain letters, ' - 'numbers, points, underscores and/or hyphens', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - -class SampleResourceValidator(ResourceValidator): - """Validator for files defining and setting sample-level attributes.""" - - REQUIRED_HEADERS = ['SAMPLE_ID', 'PATIENT_ID', 'RESOURCE_ID', 'URL'] - - def __init__(self, *args, **kwargs): - """Initialize a SampleResourceValidator with the given parameters.""" - super(SampleResourceValidator, self).__init__(*args, **kwargs) - self.sample_id_lines = {} - self.sampleIds = self.sample_id_lines.keys() - self.patient_ids = set() - self.defined_resources = {} - - def checkLine(self, data): - """Check the values in a line of data.""" - super(SampleResourceValidator, self).checkLine(data) - resource_id = '' - sample_id = '' - resource_url = '' - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - # make sure RESOURCE_ID is defined correctly - if col_name == 'RESOURCE_ID': - if value not in RESOURCE_DEFINITION_DICTIONARY or 'SAMPLE' not in RESOURCE_DEFINITION_DICTIONARY[value]: - self.logger.error( - 'RESOURCE_ID for sample resource is not defined correctly in resource definition file', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - if value in RESOURCE_DEFINITION_DICTIONARY and len(RESOURCE_DEFINITION_DICTIONARY[value]) > 1: - self.logger.warning( - 'RESOURCE_ID for sample resource has been used by more than one RESOURCE_TYPE', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': RESOURCE_DEFINITION_DICTIONARY[value]}) - resource_id = value - if col_name == 'SAMPLE_ID': - if value.strip().lower() in self.NULL_VALUES: - self.logger.error( - 'Missing SAMPLE_ID', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - continue - if value not in self.sample_id_lines: - self.sample_id_lines[value] = self.line_number - sample_id = value - elif col_name == 'PATIENT_ID': - self.patient_ids.add(value) - if col_name == 'URL': - resource_url = value - # check duplicate - if (resource_id, sample_id, resource_url) in self.defined_resources: - self.logger.error( - 'Duplicated resources found', - extra={'line_number': self.line_number, - 'duplicated_line_number': self.defined_resources[(resource_id, sample_id, resource_url)]}) - else: - self.defined_resources[(resource_id, sample_id, resource_url)] = self.line_number - -class PatientResourceValidator(ResourceValidator): - - REQUIRED_HEADERS = ['PATIENT_ID', 'RESOURCE_ID', 'URL'] - - def __init__(self, *args, **kwargs): - """Initialize a PatientResourceValidator with the given parameters.""" - super(PatientResourceValidator, self).__init__(*args, **kwargs) - self.patient_id_lines = {} - self.defined_resources = {} - - def checkLine(self, data): - """Check the values in a line of data.""" - super(PatientResourceValidator, self).checkLine(data) - resource_id = '' - patient_id = '' - resource_url = '' - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - # make sure RESOURCE_ID is defined correctly - if col_name == 'RESOURCE_ID': - if value not in RESOURCE_DEFINITION_DICTIONARY or 'PATIENT' not in RESOURCE_DEFINITION_DICTIONARY[value]: - self.logger.error( - 'RESOURCE_ID for patient resource is not defined correctly in resource definition file', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - if value in RESOURCE_DEFINITION_DICTIONARY and len(RESOURCE_DEFINITION_DICTIONARY[value]) > 1: - self.logger.warning( - 'RESOURCE_ID for patient resource has been used by more than one RESOURCE_TYPE', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': RESOURCE_DEFINITION_DICTIONARY[value]}) - resource_id = value - if col_name == 'PATIENT_ID': - if value not in self.patient_id_lines: - self.patient_id_lines[value] = self.line_number - patient_id = value - if col_name == 'URL': - resource_url = value - # check duplicate - if (resource_id, patient_id, resource_url) in self.defined_resources: - self.logger.error( - 'Duplicated resources found', - extra={'line_number': self.line_number, - 'duplicated_line_number': self.defined_resources[(resource_id, patient_id, resource_url)]}) - else: - self.defined_resources[(resource_id, patient_id, resource_url)] = self.line_number - -class StudyResourceValidator(ResourceValidator): - - REQUIRED_HEADERS = ['RESOURCE_ID', 'URL'] - - def __init__(self, *args, **kwargs): - """Initialize a StudyResourceValidator with the given parameters.""" - super(StudyResourceValidator, self).__init__(*args, **kwargs) - self.defined_resources = {} - - def checkLine(self, data): - """Check the values in a line of data.""" - super(StudyResourceValidator, self).checkLine(data) - resource_id = '' - resource_url = '' - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index].strip() - # make sure RESOURCE_ID is defined correctly - if col_name == 'RESOURCE_ID': - if value not in RESOURCE_DEFINITION_DICTIONARY or 'STUDY' not in RESOURCE_DEFINITION_DICTIONARY[value]: - self.logger.error( - 'RESOURCE_ID for study resource is not defined correctly in resource definition file', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - if value in RESOURCE_DEFINITION_DICTIONARY and len(RESOURCE_DEFINITION_DICTIONARY[value]) > 1: - self.logger.warning( - 'RESOURCE_ID for study resource has been used by more than one RESOURCE_TYPE', - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': RESOURCE_DEFINITION_DICTIONARY[value]}) - resource_id = value - if col_name == 'URL': - resource_url = value - # check duplicate - if (resource_id, resource_url) in self.defined_resources: - self.logger.error( - 'Duplicated resources found', - extra={'line_number': self.line_number, - 'duplicated_line_number': self.defined_resources[(resource_id, resource_url)]}) - else: - self.defined_resources[(resource_id, resource_url)] = self.line_number - -class GisticGenesValidator(Validator): - - """Validator for files with information aggregated from GISTIC output. - - This file type is produced by the cBioPortal data transformation pipelines, - based on the `table_{amp|del}.conf_*.txt` files in combination with data - from `{amp|del}_genes_conf_*.txt`. - """ - - REQUIRED_HEADERS = [ - 'chromosome', - 'peak_start', - 'peak_end', - 'genes_in_region', - 'amp', - 'cytoband', - 'q_value'] - - REQUIRE_COLUMN_ORDER = False - ALLOW_BLANKS = True - NULL_VALUES = [''] - - def __init__(self, *args, **kwargs): - """Initialize a GisticGenesValidator with the given parameters.""" - super(GisticGenesValidator, self).__init__(*args, **kwargs) - # checkLine() expects particular values here, for the 'amp' column - if not self.meta_dict['reference_genome_id'].startswith('hg'): - if not self.meta_dict['reference_genome_id'].startswith('mm'): - raise RuntimeError( - "GisticGenesValidator requires the metadata field " - "reference_genome_id to start with 'hg' or 'mm'") - if self.meta_dict['genetic_alteration_type'] not in ( - 'GISTIC_GENES_AMP', 'GISTIC_GENES_DEL'): - raise RuntimeError( - "Genetic alteration type '{}' not supported by " - "GisticGenesValidator.".format( - self.meta_dict['genetic_alteration_type'])) - self.chromosome_lengths = self.load_chromosome_lengths( - self.meta_dict['reference_genome_id'], - self.logger.logger - ) - - def checkLine(self, data): - - """Check the values on a data line.""" - - super(GisticGenesValidator, self).checkLine(data) - # properties to be validated in relation to each other if - # individually sensible values are found - parsed_chromosome = None - parsed_peak_start = None - parsed_peak_end = None - parsed_gene_list = None - cytoband_chromosome = None - parsed_cytoband = None - - # perform specific validations for each known column - for col_index, col_name in enumerate(self.cols): - # treat cells beyond the end of the line as blanks, - # super().checkLine() has already logged an error - value = '' - if col_index < len(data): - value = data[col_index] - # of the required columns, only genes_in_region can be blank - if ((col_name in self.REQUIRED_HEADERS and - col_name != 'genes_in_region') and - value.strip() in self.NULL_VALUES): - self.logger.error("Empty cell in column '%s'", - col_name, - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - # skip to the next column - continue - if col_name == 'chromosome': - parsed_chromosome = self.parse_chromosome_num( - value, column_number=col_index + 1, - chromosome_lengths=self.chromosome_lengths) - elif col_name == 'peak_start': - parsed_peak_start = self.parse_genomic_coord( - value, column_number=col_index + 1) - elif col_name == 'peak_end': - parsed_peak_end = self.parse_genomic_coord( - value, column_number=col_index + 1) - elif col_name == 'genes_in_region': - parsed_gene_list = self.parse_gene_list( - value, column_number=col_index + 1) - elif col_name == 'amp': - self.parse_amp_value( - value, column_number=col_index + 1) - elif col_name == 'cytoband': - cytoband_chromosome, parsed_cytoband = self.parse_cytoband( - value, column_number=col_index + 1) - elif col_name == 'q_value': - self.parse_q_value( - value, column_number=col_index + 1) - - # check if the start and the end of the peak are in the right order - if parsed_peak_start is not None and parsed_peak_end is not None: - if parsed_peak_start > parsed_peak_end: - # is an error according to UCSC "0" convention, end location excluded. - # see also https://groups.google.com/forum/#!topic/igv-help/LjffjxPul2M - self.logger.error( - 'Start position of peak is not lower than end position', - extra={'line_number': self.line_number, - 'cause': '{}/{}'.format(parsed_peak_start, - parsed_peak_end)}) - elif parsed_peak_end == parsed_peak_start: - # cBioPortal seems to filter out regions in which the narrow - # peak (based on all samples) is 0 bases wide. I have seen - # examples of peaks of length 0 at the end position of the - # corresponding `wide peak' in Firehose data. - self.logger.warning( - 'Peak is 0 bases wide and will not be shown in cBioPortal', - extra={'line_number': self.line_number, - 'cause': '{}-{}'.format(parsed_peak_start, - parsed_peak_end)}) - - - # check coordinates with the cytoband specification - if cytoband_chromosome and parsed_cytoband: - if parsed_chromosome: - if cytoband_chromosome != parsed_chromosome: - self.logger.error( - 'Cytoband and chromosome specifications do not match', - extra={'line_number': self.line_number, - 'cause': '(%s%s, %s)' % - (cytoband_chromosome, - parsed_cytoband, - parsed_chromosome)}) - # TODO: validate band/coord sets with the UCSC cytoband definitions (using - # parsed_gene_list and some of the other parsed_*list variables - - def parse_gene_list(self, value, column_number): - """Parse a csv gene symbol list, logging any errors for this column. - - Return the parsed value if valid, None otherwise. - """ - comma_sep_list = value.strip() - # ignore any trailing comma - if comma_sep_list.endswith(','): - comma_sep_list = comma_sep_list[:-1] - # list to collect parseable gene symbols - parsed_gene_list = [] - # give a custom warning if the list is empty - if comma_sep_list.strip() == '': - self.logger.warning( - "No genes listed in GISTIC copy-number altered region", - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - else: - # loop over the comma-separated list of gene symbols. Example of such a - # list: RNA5SP149,snoU13|ENSG00000239096.1,GNB4 - for symbol in comma_sep_list.split(','): - symbol = symbol.strip() - # remove the | and trailing part if any (e.g. - # remove |ENSG00000239096.1 from snoU13|ENSG00000239096.1): - symbol = symbol.split('|')[0] - # add valid, unambiguous gene symbols to the list, - # while logging errors about unresolvable ones - # TODO: allow blanks if possible after this fix: - # https://github.com/cBioPortal/cbioportal/issues/884 - if self.checkGeneIdentification(symbol, entrez_id=None): - parsed_gene_list.append(symbol) - - def parse_amp_value(self, value, column_number): - """Parse an `amp` column flag, logging any errors for this column. - - Return the parsed value if valid, None otherwise. - """ - # 1 for _AMP, 0 for _DEL - expected_value = str(int( - self.meta_dict['genetic_alteration_type'] == - 'GISTIC_GENES_AMP')) - if value != expected_value: - self.logger.error( - "'amp' column must be '%s' in files of genetic " - "alteration type '%s'", - expected_value, - self.meta_dict['genetic_alteration_type'], - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - return None - else: - return int(value) - - def parse_cytoband(self, value, column_number): - """Parse a cytoband with chromosome, logging any errors for this col. - - Return a tuple of the chromosome number and the cytoband specification - if valid, a tuple of Nones otherwise. - """ - chromosome_num = None - cytoband = None - # find the index of the (first) p or otherwise q, the arm - arm_index = value.find('p') - if arm_index == -1: - arm_index = value.find('q') - if arm_index == -1: - self.logger.error( - "Cytoband specification contains no 'p' or 'q'", - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - else: - chromosome_num = value[:arm_index] - cytoband = value[arm_index:] - if chromosome_num is not None and chromosome_num == '': - self.logger.error( - 'Cytoband specification does not include the chromosome', - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - chromosome_num, cytoband = None, None - # TODO: check if the cytoband exists in the UCSC cytobands file - return chromosome_num, cytoband - - def parse_q_value(self, value, column_number): - """Parse a q-value (numeral), logging any errors for this colum. - - Return the parsed value if valid, None otherwise. - """ - parsed_value = None - value_invalid = False - try: - parsed_value = float(value) - except ValueError: - self.logger.error('q-value is not a real number', - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - value_invalid = True - if not value_invalid and (not 0 <= parsed_value <= 1): - self.logger.error('q-value is not between 0 and 1', - extra={'line_number': self.line_number, - 'column_number': column_number, - 'cause': value}) - if value_invalid: - return None - else: - return parsed_value - -class MultipleDataFileValidator(FeaturewiseFileValidator, metaclass=ABCMeta): - - """Ensures that multiple files that contain feature x sample data are consistent. - - MultipleDataFileValidator ensures that multiple files that contain feature x sample - data have consistent headers (containing sample id's) and feature columns (containing feature - id's). Errors messages are issued when samples or features are missing or when samples or features - are present in one but not the other file. - .""" - - def __init__(self, *args, **kwargs): - super(MultipleDataFileValidator, self).__init__(*args, **kwargs) - self.feature_ids = [] - - @staticmethod - @abstractmethod - def get_prior_validated_header(): - """Return the header for this group of classes.""" - - @staticmethod - @abstractmethod - def set_prior_validated_header(header_names): - """Set the header for this group of classes.""" - - @staticmethod - @abstractmethod - def get_prior_validated_feature_ids(): - """Return the feature ID list for this group of classes.""" - - @staticmethod - @abstractmethod - def set_prior_validated_feature_ids(feature_ids): - """Set the feature ID list for this group of classes.""" - - @staticmethod - @abstractmethod - def get_prior_validated_sample_ids(): - """Return the sample ID list for this group of classes.""" - - @staticmethod - @abstractmethod - def set_prior_validated_sample_ids(sample_ids): - """Set the sample ID list for this group of classes.""" - - @classmethod - @abstractmethod - def get_message_features_do_not_match(cls): - """Return information on error type 'features do not match'. - - An error will be raised when features are not constent between - files loaded within the context of a MultipleFileValidator. - Classes that extend MultipleDataFileValidator must implement - the get_message_features_do_not_match() method. The expected - return value is a string describing the type of error. - """ - pass - - def checkHeader(self, cols): - """Validate the header and read sample IDs from it. - - Return the number of fatal errors. - """ - num_errors = super(MultipleDataFileValidator, self).checkHeader(cols) - - if self.get_prior_validated_header() is not None: - if self.cols != self.get_prior_validated_header(): - self.logger.error('Headers from data files are different', - extra={'line_number': self.line_number}) - num_errors += 1 - else: - self.set_prior_validated_header(self.cols) - - return num_errors - - def parseFeatureColumns(self, nonsample_col_vals): - - """Check the feature id column.""" - - ALLOWED_CHARACTERS = r'[^A-Za-z0-9_.-]' - - feature_id = nonsample_col_vals[0].strip() - - # Check if genetic entity is present - if feature_id == '': - # Validator already gives warning for this in checkLine method - pass - elif re.search(ALLOWED_CHARACTERS, feature_id) is not None: - self.logger.error('Feature id contains one or more illegal characters', - extra={'line_number': self.line_number, - 'cause': 'id was`'+feature_id+'` and only alpha-numeric, _, . and - are allowed.'}) - else: - # Check if this is the second data file - if self.get_prior_validated_feature_ids() is not None: - # Check if genetic entity is in the first data file - if feature_id not in self.get_prior_validated_feature_ids(): - self.logger.error('Feature id cannot be found in other data file', - extra={'line_number': self.line_number, - 'cause': feature_id}) - # Add genetic entity to list of entities of current data file - self.feature_ids.append(feature_id) - return feature_id - - def onComplete(self): - - def checkConsistencyFeatures(self): - """This function validates whether the features in the data files are the same""" - - # If the prior_validated_features_ids is not filled yet, fill it with the first file. - if self.get_prior_validated_feature_ids() is None: - ids = self.feature_ids - self.set_prior_validated_feature_ids(ids) - else: - # Check if feature ids are the same - if not self.get_prior_validated_feature_ids() == self.feature_ids: - self.logger.error( self.get_message_features_do_not_match() ) - - checkConsistencyFeatures(self) - - super(MultipleDataFileValidator, self).onComplete() - - def checkId(self): - return self.checkIdInSamples() - -class GsvaWiseFileValidator(MultipleDataFileValidator, metaclass=ABCMeta): - """Groups multiple gene set data files from a study to ensure consistency. - - All Validator classes that check validity of different gene set data - types in a study should inherit from this class. - """ - - prior_validated_sample_ids = None - prior_validated_feature_ids = None - prior_validated_header = None - REQUIRED_HEADERS = ['geneset_id'] - - @staticmethod - def get_prior_validated_header(): - return GsvaWiseFileValidator.prior_validated_header - - @staticmethod - def set_prior_validated_header(header_names): - GsvaWiseFileValidator.prior_validated_header = header_names - - @staticmethod - def get_prior_validated_feature_ids(): - return GsvaWiseFileValidator.prior_validated_feature_ids - - @staticmethod - def set_prior_validated_feature_ids(feature_ids): - GsvaWiseFileValidator.prior_validated_feature_ids = feature_ids - - @staticmethod - def get_prior_validated_sample_ids(): - return GsvaWiseFileValidator.prior_validated_sample_ids - - @staticmethod - def set_prior_validated_sample_ids(sample_ids): - GsvaWiseFileValidator.prior_validated_sample_ids = sample_ids - - @classmethod - def get_message_features_do_not_match(cls): - return "Gene sets column in score and p-value file are not equal. The same set of gene sets should be used in the score and p-value files for this study. Please ensure that all gene set id's of one file are present in the other gene set data file." - - -class GsvaScoreValidator(GsvaWiseFileValidator): - - """ Validator for files containing scores per gene set from GSVA algorithm. The GSVA algorithm - in R can calculate a GSVA score or GSVA-like score (such as ssGSEA) per sample per gene set. - """ - - # Score must be between -1 and 1 - def checkValue(self, value, col_index): - """Check a value in a sample column.""" - stripped_value = float(value.strip()) - if stripped_value < -1 or stripped_value > 1: - self.logger.error("Value is not between -1 and 1, and therefore not " - "a valid GSVA score", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - -class GsvaPvalueValidator(GsvaWiseFileValidator): - - """ Validator for files containing p-values for GSVA scores. The GSVA algorithm in R can - calculate a p-value for each GSVA score using a bootstrapping method. - """ - - # Score must be between -0 and 1 - def checkValue(self, value, col_index): - """Check a value in a sample column.""" - stripped_value = float(value.strip()) - if stripped_value <= 0 or stripped_value > 1: - self.logger.error("Value is not between 0 and 1, and therefore not a valid p-value", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - -class GenericAssayWiseFileValidator(FeaturewiseFileValidator): - """ Generic assay file base validator - """ - prior_validated_sample_ids = None - prior_validated_feature_ids = None - prior_validated_header = None - def __init__(self, *args, **kwargs): - """Initialize the instance attributes of the data file validator.""" - super(GenericAssayWiseFileValidator, self).__init__(*args, **kwargs) - # reset REQUIRED_HEADERS for each generic assay meta file, and then add headers defined in generic_entity_meta_properties - self.REQUIRED_HEADERS = ['ENTITY_STABLE_ID'] - self.REQUIRED_HEADERS.extend([x.strip() for x in self.meta_dict['generic_entity_meta_properties'].split(',')]) - - REQUIRED_HEADERS = ['ENTITY_STABLE_ID'] - OPTIONAL_HEADERS = [] - UNIQUE_COLUMNS = ['ENTITY_STABLE_ID'] - ALLOW_BLANKS = True - NULL_VALUES = ["NA"] - - def parseFeatureColumns(self, nonsample_col_vals): - """Check the IDs in the first column.""" - - allowed_characters = r'[^A-Za-z0-9_.-]' - - value = nonsample_col_vals[0].strip() - - # Check if genetic entity is present and contains allowed characters - if re.search(allowed_characters, value) is not None: - self.logger.error('Feature id contains one or more illegal characters', - extra={'line_number': self.line_number, - 'cause': 'id was`' + value + '` and only alpha-numeric, _, . and - are allowed.'}) - - return value - - def checkId(self): - """Check if patient/sample IDs are imported""" - num_errors = 0 - is_patient_level = True if 'patient_level' in self.meta_dict and self.meta_dict['patient_level'].strip().lower() == 'true' else False - # self.sampleIds can save either patient ids or sample ids - ids = self.sampleIds - for index, id in enumerate(ids): - if ' ' in id: - self.logger.error( - 'White space in id is not supported', - extra={'line_number': self.line_number, - 'column_number': self.num_nonsample_cols + index + 1, - 'cause': id}) - num_errors += 1 - elif is_patient_level: - # check patient id for patient level data - if not self.checkPatientId( - id, - column_number=self.num_nonsample_cols + index + 1): - num_errors += 1 - else: - # check sample id for non patient level data - if not self.checkSampleId( - id, - column_number=self.num_nonsample_cols + index + 1): - num_errors += 1 - return num_errors - -class GenericAssayContinuousValidator(GenericAssayWiseFileValidator): - - """ Validator for files containing generic assay limit continuous values. - """ - def __init__(self, *args, **kwargs): - """Initialize the instance attributes of the data file validator.""" - super(GenericAssayContinuousValidator, self).__init__(*args, **kwargs) - - # (1) Natural positive number (not 0) - # (2) Number may be prefixed by ">" or "<"; f.i. ">n" means that the real value lies beyond value n. - # (3) NA cell value is allowed; means value was not tested on a sample - # (4) empty cell is allowed; means value was not tested on a sample - # - # Warnings for values: - # (1) Cell contains a value without decimals and is not prefixed by ">"; value appears to be truncated but lacks ">" truncation indicator - def checkValue(self, value, col_index): - """Check a value in a sample column.""" - stripped_value = value.strip() - # if the value is prefixed with '>' or '<' remove this prefix - # prior to evaluation of the numeric value - hasTruncSymbol = re.match("^[><]", stripped_value) - stripped_value = re.sub(r"^[><]\s*","", stripped_value) - - # do not check null values - # 'NA' is an allowed value. No further validations apply. - if stripped_value in self.NULL_VALUES: - return - - # value is not defined (empty cell) - if len(stripped_value) == 0: - # empty cell is allowed - return - - try: - numeric_value = float(stripped_value) - except ValueError: - self.logger.error("Value cannot be interpreted as a floating point number and is not valid value.", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - return - - if math.isnan(numeric_value): - self.logger.error("Value is NaN, therefore, not a valid value.", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - return - - if math.isinf(numeric_value): - self.logger.error("Value is infinite and, therefore, not a valid value.", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - return - - if numeric_value % 1 == 0 and not hasTruncSymbol: - self.logger.warning("Value has no decimals and may represent an invalid value.", - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - return - -class GenericAssayCategoricalValidator(GenericAssayWiseFileValidator): - - """ Validator for files containing generic assay categorical values. - """ - - # Global validation for specific generic assay types - GENERIC_ASSAY_CATEGORICAL_VALUES_MAP_BY_TYPE = { - 'ARMLEVEL_CNA': ['Gain', 'Loss', 'Unchanged'], - } - - ALLOWED_VALUES = None - - def __init__(self, *args, **kwargs): - """Initialize the instance attributes of the data file validator.""" - super(GenericAssayCategoricalValidator, self).__init__(*args, **kwargs) - # Define ALLOWED_VALUES based on generic_assay_type - if 'generic_assay_type' in self.meta_dict: - generic_assay_type = self.meta_dict['generic_assay_type'].strip().upper() - if generic_assay_type in self.GENERIC_ASSAY_CATEGORICAL_VALUES_MAP_BY_TYPE: - self.ALLOWED_VALUES = self.GENERIC_ASSAY_CATEGORICAL_VALUES_MAP_BY_TYPE[generic_assay_type] - - def checkValue(self, value, col_index): - """ Check value if ALLOWED_VALUES defined, or Categorical data do not need further validation """ - if self.ALLOWED_VALUES: - stripped_value = value.strip() - # do not check null values - # 'NA' is an allowed value. No further validations apply. - if stripped_value in self.NULL_VALUES: - return - # value is not defined (empty cell) - if len(stripped_value) == 0: - # empty cell is allowed - return - if stripped_value not in self.ALLOWED_VALUES: - self.logger.error( - 'Invalid generic assay categorical value: possible values are [%s]', - ', '.join(self.ALLOWED_VALUES), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - return - -class GenericAssayBinaryValidator(GenericAssayWiseFileValidator): - - """ Validator for files containing generic assay binary values. - """ - def __init__(self, *args, **kwargs): - """Initialize the instance attributes of the data file validator.""" - super(GenericAssayBinaryValidator, self).__init__(*args, **kwargs) - - # (1) values defined in ALLOWED_VALUES - # (2) NA cell value is allowed; means value was not tested on a sample - # (3) empty cell is allowed; means value was not tested on a sample - - ALLOWED_VALUES = ['yes', 'no', 'true', 'false'] + GenericAssayWiseFileValidator.NULL_VALUES - - def checkValue(self, value, col_index): - """Check a value in a sample column.""" - stripped_value = value.strip() - # do not check null values - # 'NA' is an allowed value. No further validations apply. - if stripped_value in self.NULL_VALUES: - return - # value is not defined (empty cell) - if len(stripped_value) == 0: - # empty cell is allowed - return - if stripped_value not in self.ALLOWED_VALUES: - self.logger.error( - 'Invalid generic assay binary value: possible values are [%s]', - ', '.join(self.ALLOWED_VALUES), - extra={'line_number': self.line_number, - 'column_number': col_index + 1, - 'cause': value}) - - return - -# ------------------------------------------------------------------------------ -# Functions - -# FIXME: returning simple valid (meta_fn, data_fn) pairs would be cleaner, -# Validator objects can be instantiated with a portal instance elsewhere -def process_metadata_files(directory, portal_instance, logger, relaxed_mode, strict_maf_checks): - - """Parse the meta files in a directory and create data file validators. - - Return a tuple of: - 1. a dict listing the data file validator (or None) for each meta file - by file type, - 2. a dict mapping any case list IDs defined *outside* of the case list - directory to paths of the files in which they were defined - 3. the cancer type of the study, and - 4. the study id - - Possible file types are listed in cbioportal_common.MetaFileTypes. - """ - - # get filenames for all meta files in the directory - filenames = [os.path.join(directory, f) for - f in sorted(os.listdir(directory)) if - re.search(r'(\b|_)meta(\b|[_0-9])', f, - flags=re.IGNORECASE) and - not f.startswith('ONCOKB_IMPORT_BACKUP') and - not f.startswith('.') and - not f.endswith('~')] - - if len(filenames) == 0: - logger.critical( - 'No meta files found in ' + directory +'. Please make sure the directory '\ - 'is the path to the folder containing the files.') - - study_id = None - study_cancer_type = None - study_data_types = [] - validators_by_type = {} - case_list_suffix_fns = {} - stable_ids = [] - global meta_dictionary - tags_file_path = None - - # implemented ref genomes - reference_genome_map = { - 'hg19': ('human', 'GRCh37', 'hg19'), - 'hg38': ('human', 'GRCh38', 'hg38'), - 'mm10': ('mouse', 'GRCm38', 'mm10') - } - - DISALLOWED_CHARACTERS = r'[^A-Za-z0-9_-]' - for filename in filenames: - - meta_dictionary = cbioportal_common.parse_metadata_file( - filename, logger, study_id, gene_panel_list=portal_instance.gene_panel_list) - meta_file_type = meta_dictionary['meta_file_type'] - if meta_file_type is None: - continue - - # check if geneset version is the same in database - if portal_instance.geneset_version is not None and 'geneset_def_version' in meta_dictionary: - geneset_def_version = meta_dictionary['geneset_def_version'].strip() - if (geneset_def_version != portal_instance.geneset_version): - logger.error( - '`geneset_def_version` is different from the geneset_version in the database', - extra={'filename_': filename, - 'cause': geneset_def_version}) - - # validate stable_id to be unique (check can be removed once we deprecate this field): - if 'stable_id' in meta_dictionary: - stable_id = meta_dictionary['stable_id'].strip() - - # Check for non-supported characters in the stable_id - # Note: this check is needed because when using a wildcard for STABLE_ID - # in the allowed_file_types.txt the user can specify a custom stable_id in the meta file. - if stable_id == '' or re.search(DISALLOWED_CHARACTERS, stable_id) != None: - logger.error( - '`stable_id` is not valid (empty string or contains one or more illegal characters)', - extra={'filename_': filename, - 'cause': stable_id}) - - if stable_id in stable_ids: - # stable id already used in other meta file, give error: - logger.error( - 'stable_id repeated. It should be unique across all files in a study', - extra={'filename_': filename, - 'cause': stable_id}) - else: - stable_ids.append(stable_id) - - # Save meta values in a study wide dictionary - study_meta_dictionary[stable_id] = meta_dictionary - - # Validate data types - if 'datatype' in meta_dictionary: - if meta_dictionary['datatype'].lower() in study_data_types: - # For Seg file only one can be loaded - if meta_dictionary['datatype'].lower() == "seg": - logger.error('datatype SEG is repeated. Only one segmentation file can be loaded.') - else: - study_data_types.append(meta_dictionary['datatype'].lower()) - - if study_id is None and 'cancer_study_identifier' in meta_dictionary: - study_id = meta_dictionary['cancer_study_identifier'] - if meta_file_type == cbioportal_common.MetaFileTypes.STUDY: - if study_cancer_type is not None: - logger.error( - 'Encountered a second meta_study file', - extra={'filename_': filename}) - else: - study_cancer_type = meta_dictionary['type_of_cancer'] - if ('add_global_case_list' in meta_dictionary and - meta_dictionary['add_global_case_list'].lower() == 'true'): - case_list_suffix_fns['all'] = filename - - # if reference_genome is specified in the meta file, override the defaults in portal properties - if 'reference_genome' in meta_dictionary: - if meta_dictionary['reference_genome'] not in reference_genome_map: - logger.error('Unknown reference genome defined. Should be one of %s' % - list(reference_genome_map.keys()), - extra={ - 'filename_': filename, - 'cause': meta_dictionary['reference_genome'].strip() - }) - else: - genome_info = reference_genome_map[meta_dictionary['reference_genome']] - logger.info('Setting reference genome to %s (%s, %s)' % genome_info, - extra={'filename_': filename}) - portal_instance.species, portal_instance.ncbi_build, portal_instance.reference_genome = genome_info - else: - logger.info('No reference genome specified -- using default (hg19)', - extra={'filename_': filename}) - - # Validate PMID field in meta_study - if 'pmid' in meta_dictionary: - if 'citation' not in meta_dictionary: - logger.warning('Citation is required when providing a PubMed ID (pmid)') - stripped_pmid_value_len = len(meta_dictionary['pmid'].strip()) - no_whitespace_pmid_value_len = len(''.join(meta_dictionary['pmid'].split())) - if (no_whitespace_pmid_value_len != stripped_pmid_value_len): - logger.error('The PMID field in meta_study should not contain any embedded whitespace', - extra={'cause': meta_dictionary['pmid'].strip()}) - for pmid_entry in [x.strip() for x in meta_dictionary['pmid'].split(',')]: - try: - value = int(pmid_entry) - except ValueError: - logger.error('The PMID field in meta_study should be a comma separated list of integers', - extra={'cause': pmid_entry}) - - # Validate Study Tags file field in meta_study - if 'tags_file' in meta_dictionary: - logger.debug( - 'Study Tag file found. It will be validated.') - tags_file_path = os.path.join(directory, meta_dictionary['tags_file']) - - # create a list for the file type in the dict - if meta_file_type not in validators_by_type: - validators_by_type[meta_file_type] = [] - # check if data_filename is set AND if data_filename is a supported field according to META_FIELD_MAP: - if 'data_filename' in meta_dictionary and 'data_filename' in cbioportal_common.META_FIELD_MAP[meta_file_type]: - validator_class = globals()[VALIDATOR_IDS[meta_file_type]] - validator = validator_class(directory, meta_dictionary, - portal_instance, logger, - relaxed_mode, strict_maf_checks) - validators_by_type[meta_file_type].append(validator) - else: - validators_by_type[meta_file_type].append(None) - - if study_cancer_type is None: - logger.error( - 'Cancer type needs to be defined for a study. Verify that you have a study file ' - 'and have defined the cancer type correctly.') - - # prepend the cancer study id to any case list suffixes - defined_case_list_fns = {} - if study_id is not None: - for suffix in case_list_suffix_fns: - defined_case_list_fns[study_id + '_' + suffix] = \ - case_list_suffix_fns[suffix] - - return (validators_by_type, defined_case_list_fns, - study_cancer_type, study_id, stable_ids, tags_file_path) - - -def processCaseListDirectory(caseListDir, cancerStudyId, logger, - prev_stableid_files=None): - """Validate the case lists in a directory and return an id/file mapping. - - Args: - caseListDir (str): path to the case list directory. - cancerStudyId (str): cancer_study_identifier expected in the files. - logger: logging.Logger instance through which to send output. - prev_stableid_files (Optional): dict mapping the stable IDs of any case - lists already defined to the files they were defined in. - - Returns: - Dict[str, str]: dict mapping the stable IDs of all valid defined case - lists to the files they were defined in, including the - prev_stableid_files argument - """ - - logger.debug('Validating case lists') - - stableid_files = {} - global mutation_sample_ids - - # include the previously defined stable IDs - if prev_stableid_files is not None: - stableid_files.update(prev_stableid_files) - - case_list_fns = [os.path.join(caseListDir, fn) for - fn in os.listdir(caseListDir) if - not (fn.startswith('.') or fn.endswith('~'))] - - # Save case list categories - previous_case_list_categories = [] - - for case in case_list_fns: - - meta_dictionary = cbioportal_common.parse_metadata_file( - case, logger, cancerStudyId, case_list=True) - # skip if invalid, errors have already been emitted - if meta_dictionary['meta_file_type'] is None: - continue - - # check for correct naming of case list stable ids - stable_id = meta_dictionary['stable_id'] - if not stable_id.startswith(cancerStudyId + '_'): - logger.error('Stable_id of case list does not start with the ' - 'study id (%s) followed by an underscore', - cancerStudyId, - extra={'filename_': case, - 'cause': stable_id}) - - # check for duplicated stable ids - elif stable_id in stableid_files: - logger.error('Multiple case lists with this stable_id defined ' - 'in the study', - extra={'filename_': case, - 'cause': '%s (already defined in %s)' % ( - stable_id, - os.path.relpath(stableid_files[stable_id], - os.path.dirname(caseListDir)))}) - else: - stableid_files[stable_id] = case - - if 'case_list_category' in meta_dictionary: - # Valid case list categories - VALID_CATEGORIES = ['all_cases_in_study', - 'all_cases_with_mutation_data', - 'all_cases_with_cna_data', - 'all_cases_with_log2_cna_data', - 'all_cases_with_methylation_data', - 'all_cases_with_mrna_array_data', - 'all_cases_with_mrna_rnaseq_data', - 'all_cases_with_rppa_data', - 'all_cases_with_microrna_data', - 'all_cases_with_mutation_and_cna_data', - 'all_cases_with_mutation_and_cna_and_mrna_data', - 'all_cases_with_gsva_data', - 'all_cases_with_sv_data', - 'other'] - - # If the case list category is invalid, the importer will crash. - if meta_dictionary['case_list_category'] not in VALID_CATEGORIES: - logger.error('Invalid case list category', - extra={'filename_': case, - 'cause': meta_dictionary['case_list_category']}) - - # Check for duplicate case list categories - if meta_dictionary['case_list_category'] in previous_case_list_categories and \ - not meta_dictionary['case_list_category'] == 'other': - logger.warning('Case list category already used in other case list. Both will be loaded', - extra={'filename_': case, - 'cause': meta_dictionary['case_list_category']}) - else: - previous_case_list_categories.append(meta_dictionary['case_list_category']) - - # Check for any duplicate sample IDs - sample_ids = [x.strip() for x in meta_dictionary['case_list_ids'].split('\t')] - seen_sample_ids = OrderedDict() - dupl_sample_ids = OrderedDict() - for sample_id in sample_ids: - if sample_id not in seen_sample_ids: - seen_sample_ids[sample_id] = True - else: - dupl_sample_ids[sample_id] = True - - # Duplicate samples IDs are removed by the importer, therefore this is - # only a warning. - if len(dupl_sample_ids) > 0: - logger.warning('Duplicate Sample ID in case list', - extra={'filename_': case, - 'cause': ', '.join(dupl_sample_ids.keys())}) - - for value in seen_sample_ids: - # Compare case list sample ids with clinical file - if value not in DEFINED_SAMPLE_IDS: - logger.error( - 'Sample ID not defined in clinical file', - extra={'filename_': case, - 'cause': value}) - # Check if there are white spaces in the sample id - if ' ' in value: - logger.error( - 'White space in sample id is not supported', - extra={'filename_': case, - 'cause': value}) - - if stable_id.split('_')[-1] == 'sequenced': - mutation_sample_ids = set(sample_ids) - - # Check all samples in the mutation data are included in the `_sequenced` case list - if len(mutation_file_sample_ids) > 0: - if not mutation_file_sample_ids.issubset(mutation_sample_ids): - mutation_sample_ids_not_in_case_list = ", ".join(mutation_file_sample_ids - mutation_sample_ids) - logger.error( - "Sample IDs from mutation data are missing from the '_sequenced' case list.", - extra={'filename_': case, - 'cause': mutation_sample_ids_not_in_case_list}) - - logger.info('Validation of case list folder complete') - - return stableid_files - - -def validate_defined_caselists(cancer_study_id, case_list_ids, file_types, logger): - - """Validate the set of case lists defined in a study. - - Args: - cancer_study_id (str): the study ID to be expected in the stable IDs - case_list_ids (Iterable[str]): stable ids of defined case lists - file_types (Dict[str, str]): listing of the MetaFileTypes with high- - dimensional data in this study--some imply certain case lists - logger: logging.Logger instance to log output to - """ - - if cancer_study_id + '_all' not in case_list_ids: - logger.error( - "No case list found with stable_id '%s', consider adding " - "'add_global_case_list: true' to the meta_study.txt file", - cancer_study_id + '_all') - - if 'meta_mutations_extended' in file_types: - if cancer_study_id + '_sequenced' not in case_list_ids: - logger.error( - "No case list found with stable_id '%s', please add this " - "case list to specify which samples are profiled for mutations. This " - "is required for calculation of samples with mutations in OncoPrint and Study Summary.", - cancer_study_id + '_sequenced') - - if 'meta_CNA' in file_types: - if cancer_study_id + '_cna' not in case_list_ids: - logger.error( - "No case list found with stable_id '%s', please add this " - "case list to specify which samples are profiled for mutations. This " - "is required for calculation of samples with CNA in OncoPrint and Study Summary.", - cancer_study_id + '_cna') - - if 'meta_mutations_extended' in file_types and 'meta_CNA' in file_types: - if cancer_study_id + '_cnaseq' not in case_list_ids: - logger.warning( - "No case list found with stable_id '%s', please add this " - "case list to specify which samples are profiled for this data type. On the query page, this " - "case list will be selected by default when both mutation and CNA data are available.", - cancer_study_id + '_cnaseq') - -def validateStudyTags(tags_file_path, logger): - """Validate the study tags file.""" - logger.debug('Starting validation of study tags file', - extra={'filename_': tags_file_path}) - with open(tags_file_path, 'r') as stream: - try: - parsedYaml = yaml.load(stream, Loader=yaml.FullLoader) - logger.info('Validation of study tags file complete.', - extra={'filename_': tags_file_path}) - except yaml.YAMLError as exc: - logger.error('The file provided is not in YAML or JSON format', - extra={'filename_': tags_file_path}) - -def validate_data_relations(validators_by_meta_type, logger): - - """Validation after all meta files are individually validated. - - Here we validate that the required cross-linking between expression, - zscore, gsva score and gsva pvalue files is present in the form of - source_stable_id, which is used to link the profiles to each other. - """ - # retrieve values from cbioportal_common.py - expression_stable_ids = cbioportal_common.expression_stable_ids - expression_zscores_source_stable_ids = cbioportal_common.expression_zscores_source_stable_ids - gsva_scores_stable_id = cbioportal_common.gsva_scores_stable_id - gsva_scores_source_stable_id = cbioportal_common.gsva_scores_source_stable_id - gsva_pvalues_source_stable_id = cbioportal_common.gsva_pvalues_source_stable_id - gsva_scores_filename = cbioportal_common.gsva_scores_filename - gsva_pvalues_filename = cbioportal_common.gsva_pvalues_filename - - # validation specific for Z-SCORE expression data - for expression_zscores_source_stable_id in expression_zscores_source_stable_ids: - # check if 'source_stable_id' of EXPRESSION Z-SCORE is an EXPRESSION 'stable_id' - if not expression_zscores_source_stable_id in expression_stable_ids.keys(): - logger.error( - "Invalid source_stable_id. Expected one of ['" + "', '".join(expression_stable_ids.keys()) + - "'], which are stable ids of expression files in this study", - extra={'filename_': expression_zscores_source_stable_ids[expression_zscores_source_stable_id], - 'cause': expression_zscores_source_stable_id}) - # check that source_stable_id is not the same as source_id - for expression_stable_id in expression_stable_ids.keys(): - if expression_zscores_source_stable_ids[expression_zscores_source_stable_id] == expression_stable_ids[expression_stable_id]: - if expression_zscores_source_stable_id == expression_stable_id: - logger.error( - "Both source_stable_id and stable_id refers to the same profile", - extra={'filename_': expression_zscores_source_stable_ids[expression_zscores_source_stable_id], - 'cause': expression_zscores_source_stable_id}) - - # validation specific for GSVA data - if any(m in validators_by_meta_type for m in ["meta_gsva_pvalues", "meta_gsva_scores"]): - - # When missing a gsva file, no subsequent validation will be done - missing_gsva_file = False - - # check if both files are present - if not "meta_gsva_pvalues" in validators_by_meta_type: - logger.error('Required meta GSVA p-value file is missing') - missing_gsva_file = True - if not "meta_gsva_scores" in validators_by_meta_type: - logger.error('Required meta GSVA score file is missing') - missing_gsva_file = True - if not "meta_expression" in validators_by_meta_type: - logger.error('Required meta expression file is missing.') - missing_gsva_file = True - - # check `source_stable_id` in GSVA_SCORES and GSVA_PVALUES - if not missing_gsva_file: - - # check if 'source_stable_id' of GSVA_SCORES is an EXPRESSION 'stable_id' - if not gsva_scores_source_stable_id in expression_stable_ids.keys(): - logger.error( - "Invalid source_stable_id. Expected one of ['" + "', '".join(expression_stable_ids.keys()) + - "'], which are stable ids of expression files in this study", - extra={'filename_': gsva_scores_filename, - 'cause': gsva_scores_source_stable_id}) - - # check if 'source_stable_id'of GSVA_PVALUES is an GSVA_SCORES 'stable_id' - if not gsva_pvalues_source_stable_id == gsva_scores_stable_id: - logger.error( - "Invalid source_stable_id. Expected '" + gsva_scores_stable_id + "', " - "which is the stable id of the gsva score file in this study", - extra={'filename_': gsva_pvalues_filename, - 'cause': gsva_pvalues_source_stable_id}) - - # Validate that there is a Z-SCORE expression file for GSVA study - if len(expression_zscores_source_stable_ids) == 0: - logger.error( - "Study contains GSVA data and is missing Z-Score expression file. " - "Please add a Z-Score expression file calculated from the same " - "expression file used to calculate GSVA scores") - else: - # Validate that GSVA_SCORES 'source_stable_id' is also a 'source_stable_id' - # in a Z-SCORE expression file - if not gsva_scores_source_stable_id in list(expression_zscores_source_stable_ids.keys()): - logger.error( - "source_stable_id does not match source_stable_id from Z-Score expression files. " - "Please make sure sure that Z-Score expression file is added for '" + - gsva_scores_source_stable_id + "'. Current Z-Score source stable ids found are ['" + - "', '".join(list(expression_zscores_source_stable_ids.keys())) +"'].", - extra={'filename_': gsva_scores_filename, - 'cause': gsva_scores_source_stable_id}) - - -def request_from_portal_api(server_url, api_name, logger): - """Send a request to the portal API and return the decoded JSON object.""" - - if api_name in ['info', 'cancer-types', 'genes', 'genesets', 'gene-panels']: - service_url = server_url + '/api/' + api_name - elif api_name in ['genesets_version']: - service_url = server_url + '/api/genesets/version' - - # NOTE: There is no 'genesaliases' API enpoint and iterative querying by symbol is not viable. - # Thus for now, aliases can be imported only in offline mode - elif api_name == 'genesaliases': - return [] - - logger.debug("Requesting %s from portal at '%s'", - api_name, server_url) - # this may raise a requests.exceptions.RequestException subclass, - # usually because the URL provided on the command line was invalid or - # did not include the http:// part - response = requests.get(service_url) - try: - response.raise_for_status() - except requests.exceptions.HTTPError as e: - raise ConnectionError( - 'Failed to fetch metadata from the portal at [{}]'.format(service_url) - ) from e - - if api_name == 'gene-panels': - gene_panels = [] - for data_item in response.json(): - panel = {} - gene_panel_id = data_item['genePanelId'] - gene_panel_url = service_url+'/'+gene_panel_id - response = requests.get(gene_panel_url).json() - panel['description'] = response['description'] - panel['genes'] = response['genes'] - panel['genePanelId'] = response['genePanelId'] - gene_panels.append(panel) - return(gene_panels) - return response.json() - - -def read_portal_json_file(dir_path, api_name, logger): - """Parse a JSON file named `api_name`.json in `dir_path`. - - Replacing any forward slashes in the API name by underscores. - """ - parsed_json = None - json_fn = os.path.join(dir_path, '{}.json'.format( - api_name.replace('/', '_'))) - if os.path.isfile(json_fn): - logger.debug('Reading portal information from %s', - json_fn) - with open(json_fn, 'r') as json_file: - parsed_json = json.load(json_file) - return parsed_json - - -def index_api_data(parsed_json, id_field): - """Transform a list of dicts into a dict indexed by one of their fields. - - >>> index_api_data([{'id': 'eggs', 'val1': 42, 'foo': True}, - ... {'id': 'spam', 'val1': 1, 'foo': True}], 'id') - {'eggs': {'val1': 42, 'foo': True}, 'spam': {'val1': 1, 'foo': True}} - >>> index_api_data([{'id': 'eggs', 'val1': 42, 'foo': True}, - ... {'id': 'spam', 'val1': 1, 'foo': True}], 'val1') - {1: {'foo': True, 'id': 'spam'}, 42: {'foo': True, 'id': 'eggs'}} - """ - transformed_dict = {} - for attr in parsed_json: - # make a copy of the attr dict - # remove id field: - if not id_field in attr: - raise RuntimeError("Field '{}' not found in json object".format( - id_field)) - id_val = attr[id_field] - if id_val in transformed_dict: - raise RuntimeError("Identifier '{}' found more than once in json " - "object".format(id_val)) - # make a copy of the sub-dictionary without the id field - attr_dict = dict(attr) - del attr_dict[id_field] - transformed_dict[id_val] = attr_dict - return transformed_dict - - -def transform_symbol_entrez_map(json_data, - id_field='hugoGeneSymbol', - values_field='entrezGeneId'): - """Transform a list of homogeneous dicts into a dict of lists. - - Using the values of the `id_field` entries as the keys, mapping to lists - of corresponding `values_field` entries. - - >>> transform_symbol_entrez_map( - ... [{"hugoGeneSymbol": "A1BG", "entrezGeneId": 1}, - ... {"hugoGeneSymbol": "A2M", "entrezGeneId": 2}]) - {'A2M': [2], 'A1BG': [1]} - >>> transform_symbol_entrez_map( - ... [{"gene_alias": "A1B", "entrezGeneId": 1}, - ... {"gene_alias": "ANG3", "entrezGeneId": 738}, - ... {"gene_alias": "ANG3", "entrezGeneId": 9068}], - ... id_field="gene_alias") - {'ANG3': [738, 9068], 'A1B': [1]} - """ - result_dict = {} - for data_item in json_data: - symbol = data_item[id_field].upper() - if symbol not in result_dict: - result_dict[symbol] = [] - result_dict[symbol].append( - data_item[values_field]) - return result_dict - - -def extract_ids(json_data, id_key): - """Creates a list of all IDs retrieved from API - :param json_data: - :param id_key: - :return: - """ - result_set = set() - for data_item in json_data: - result_set.add(data_item[id_key]) - return list(result_set) - -def extract_panels(json_data, id_key): - gene_panel_list = {} - for data_item in json_data: - gene_list = [] - for entrez_id in data_item['genes']: - gene_list.append(entrez_id['entrezGeneId']) - gene_panel_list[data_item[id_key]] = gene_list - return gene_panel_list - -# there is no dump function implemented for the /info API. Unable to retrieve version. -def load_portal_metadata(json_data): - return json_data - -def load_portal_info(path, logger, offline=False): - """Create a PortalInstance object based on a server API or offline dir. - - If `offline` is True, interpret `path` as the path to a directory of JSON - files. Otherwise expect `path` to be the URL of a cBioPortal server and - use its web API. - """ - portal_dict = {} - for api_name, transform_function in ( - ('info', - lambda json_data: load_portal_metadata(json_data)), - ('cancer-types', - lambda json_data: index_api_data(json_data, 'cancerTypeId')), - ('genes', - lambda json_data: transform_symbol_entrez_map( - json_data, 'hugoGeneSymbol')), - ('genesets', - lambda json_data: extract_ids(json_data, 'genesetId')), - ('genesets_version', - lambda json_data: str(json_data).strip(' \'[]')), - ('gene-panels', - lambda json_data: extract_panels(json_data, 'genePanelId')), - ('genesaliases', - lambda json_data: transform_symbol_entrez_map(json_data, - id_field='alias', - values_field='entrezGeneId')) - ): - if offline: - parsed_json = read_portal_json_file(path, api_name, logger) - else: - parsed_json = request_from_portal_api(path, api_name, logger) - if parsed_json is not None and transform_function is not None: - parsed_json = transform_function(parsed_json) - portal_dict[api_name] = parsed_json - - if all(d is None for d in list(portal_dict.values())): - raise LookupError('No portal information found at {}'.format(path)) - return PortalInstance(portal_info_dict=portal_dict['info'], - cancer_type_dict=portal_dict['cancer-types'], - hugo_entrez_map=portal_dict['genes'], - # TODO - create a /genealiases equivalent in the new api - alias_entrez_map=portal_dict['genesaliases'], - gene_set_list=portal_dict['genesets'], - gene_panel_list=portal_dict['gene-panels'], - geneset_version = portal_dict['genesets_version'], - offline=offline) - - -# ------------------------------------------------------------------------------ -def interface(args=None): - parser = argparse.ArgumentParser(description='cBioPortal study validator') - parser.add_argument('-s', '--study_directory', - type=str, required=True, help='path to directory.') - portal_mode_group = parser.add_mutually_exclusive_group() - portal_mode_group.add_argument('-u', '--url_server', - type=str, - default='http://localhost:8080', - help='URL to cBioPortal server. You can ' - 'set this if your URL is not ' - 'http://localhost:8080') - portal_mode_group.add_argument('-p', '--portal_info_dir', - type=str, - help='Path to a directory of cBioPortal ' - 'info files to be used instead of ' - 'contacting a server') - portal_mode_group.add_argument('-n', '--no_portal_checks', - action='store_true', - help='Skip tests requiring information ' - 'from the cBioPortal installation') - parser.add_argument('-html', '--html_table', type=str, required=False, - help='path to html report output file') - parser.add_argument('-e', '--error_file', type=str, required=False, - help='File to which to write line numbers on which ' - 'errors were found, for scripts') - parser.add_argument('-v', '--verbose', required=False, action='store_true', - help='report status info messages in addition ' - 'to errors and warnings') - parser.add_argument('-r', '--relaxed_clinical_definitions', required=False, - action='store_true', default=False, - help='Option to enable relaxed mode for validator when ' - 'validating clinical data without header definitions') - parser.add_argument('-m', '--strict_maf_checks', required=False, - action='store_true', default=False, - help='Option to enable strict mode for validator when ' - 'validating mutation data') - parser = parser.parse_args(args) - return parser - - -def validate_study(study_dir, portal_instance, logger, relaxed_mode, strict_maf_checks): - - """Validate the study in `study_dir`, logging messages to `logger`, and relaxing - clinical data validation if `relaxed_mode` is true. - - This will verify that the study is compatible with the portal configuration - represented by the PortalInstance object `portal_instance`, if its - attributes are not None. - """ - - global DEFINED_CANCER_TYPES - global DEFINED_SAMPLE_IDS - global DEFINED_SAMPLE_ATTRIBUTES - global PATIENTS_WITH_SAMPLES - global RESOURCE_DEFINITION_DICTIONARY - global RESOURCE_PATIENTS_WITH_SAMPLES - - if portal_instance.cancer_type_dict is None: - logger.warning('Skipping validations relating to cancer types ' - 'defined in the portal') - if (portal_instance.hugo_entrez_map is None or - portal_instance.alias_entrez_map is None): - logger.warning('Skipping validations relating to gene identifiers and ' - 'aliases defined in the portal') - if (portal_instance.gene_set_list is None or - portal_instance.geneset_version is None): - logger.warning('Skipping validations relating to gene set identifiers') - if portal_instance.gene_panel_list is None: - logger.warning('Skipping validations relating to gene panel identifiers') - - # walk over the meta files in the dir and get properties of the study - (validators_by_meta_type, - defined_case_list_fns, - study_cancer_type, - study_id, - stable_ids, - tags_file_path) = process_metadata_files(study_dir, portal_instance, logger, relaxed_mode, strict_maf_checks) - - # first parse and validate cancer type files - studydefined_cancer_types = [] - if cbioportal_common.MetaFileTypes.CANCER_TYPE in validators_by_meta_type: - cancer_type_validators = validators_by_meta_type[ - cbioportal_common.MetaFileTypes.CANCER_TYPE] - if len(cancer_type_validators) > 1: - logger.error( - 'Multiple cancer type files detected', - extra={'cause': ', '.join( - validator.filenameShort for validator in - validators_by_meta_type[ - cbioportal_common.MetaFileTypes.CANCER_TYPE])}) - else: - cancer_type_validators[0].validate() - studydefined_cancer_types = ( - cancer_type_validators[0].defined_cancer_types) - DEFINED_CANCER_TYPES = studydefined_cancer_types - - # next check the cancer type of the meta_study file - if cbioportal_common.MetaFileTypes.STUDY not in validators_by_meta_type: - logger.error('No valid study file detected') - return - if portal_instance.cancer_type_dict is not None and not ( - study_cancer_type in portal_instance.cancer_type_dict or - study_cancer_type in DEFINED_CANCER_TYPES): - logger.error( - 'Cancer type of study is neither known to the portal nor defined ' - 'in a cancer_type file', - extra={'cause': study_cancer_type}) - - # then validate the clinical data - if cbioportal_common.MetaFileTypes.SAMPLE_ATTRIBUTES not in \ - validators_by_meta_type: - logger.error('No sample attribute file detected') - return - if len(validators_by_meta_type[ - cbioportal_common.MetaFileTypes.SAMPLE_ATTRIBUTES]) > 1: - logger.error( - 'Multiple sample attribute files detected', - extra={'cause': ', '.join( - validator.filenameShort for validator in - validators_by_meta_type[ - cbioportal_common.MetaFileTypes.SAMPLE_ATTRIBUTES])}) - - # parse the data file(s) that define sample IDs valid for this study - defined_sample_ids = None - for sample_validator in validators_by_meta_type[ - cbioportal_common.MetaFileTypes.SAMPLE_ATTRIBUTES]: - sample_validator.validate() - if sample_validator.fileCouldBeParsed: - if defined_sample_ids is None: - defined_sample_ids = set() - # include parsed sample IDs in the set (union) - defined_sample_ids |= sample_validator.sampleIds - # this will be set if a file was successfully parsed - if defined_sample_ids is None: - logger.error("Sample file could not be parsed. Please fix " - "the problems found there first before continuing.") - if not relaxed_mode: - return - DEFINED_SAMPLE_IDS = defined_sample_ids - DEFINED_SAMPLE_ATTRIBUTES = sample_validator.defined_attributes - PATIENTS_WITH_SAMPLES = sample_validator.patient_ids - - if len(validators_by_meta_type.get( - cbioportal_common.MetaFileTypes.PATIENT_ATTRIBUTES, - [])) > 1: - logger.error( - 'Multiple patient attribute files detected', - extra={'cause': ', '.join( - validator.filenameShort for validator in - validators_by_meta_type[ - cbioportal_common.MetaFileTypes.PATIENT_ATTRIBUTES])}) - - # validate resources definition before validate the other resources data - if cbioportal_common.MetaFileTypes.RESOURCES_DEFINITION in validators_by_meta_type: - if len(validators_by_meta_type[ - cbioportal_common.MetaFileTypes.RESOURCES_DEFINITION]) > 1: - logger.error( - 'Multiple resource definition files detected', - extra={'cause': ', '.join( - validator.filenameShort for validator in - validators_by_meta_type[ - cbioportal_common.MetaFileTypes.RESOURCES_DEFINITION])}) - for resources_definition_validator in validators_by_meta_type[ - cbioportal_common.MetaFileTypes.RESOURCES_DEFINITION]: - resources_definition_validator.validate() - RESOURCE_DEFINITION_DICTIONARY = resources_definition_validator.resource_definition_dictionary - - # then validate the resource data if exist - if cbioportal_common.MetaFileTypes.SAMPLE_RESOURCES in validators_by_meta_type: - if len(validators_by_meta_type[ - cbioportal_common.MetaFileTypes.SAMPLE_RESOURCES]) > 1: - logger.error( - 'Multiple sample resources files detected', - extra={'cause': ', '.join( - validator.filenameShort for validator in - validators_by_meta_type[ - cbioportal_common.MetaFileTypes.SAMPLE_RESOURCES])}) - - # parse the data file(s) that define sample IDs valid for this study - defined_resource_sample_ids = None - for sample_validator in validators_by_meta_type[ - cbioportal_common.MetaFileTypes.SAMPLE_RESOURCES]: - sample_validator.validate() - if sample_validator.fileCouldBeParsed: - if defined_resource_sample_ids is None: - defined_resource_sample_ids = set() - # include parsed sample IDs in the set (union) - defined_resource_sample_ids |= sample_validator.sampleIds - # this will be set if a file was successfully parsed - if defined_resource_sample_ids is None: - logger.error("Sample file could not be parsed. Please fix " - "the problems found there first before continuing.") - if not relaxed_mode: - return - RESOURCE_PATIENTS_WITH_SAMPLES = sample_validator.patient_ids - - if cbioportal_common.MetaFileTypes.PATIENT_RESOURCES in validators_by_meta_type: - if len(validators_by_meta_type.get( - cbioportal_common.MetaFileTypes.PATIENT_RESOURCES, - [])) > 1: - logger.error( - 'Multiple patient resources files detected', - extra={'cause': ', '.join( - validator.filenameShort for validator in - validators_by_meta_type[ - cbioportal_common.MetaFileTypes.PATIENT_RESOURCES])}) - - # then validate the study tags YAML file if it exists - if tags_file_path is not None: - validateStudyTags(tags_file_path, logger=logger) - - # validate the case list directory if present - case_list_dirname = os.path.join(study_dir, 'case_lists') - if not os.path.isdir(case_list_dirname): - logger.info("No directory named 'case_lists' found, so assuming no custom case lists.") - else: - # add case lists IDs defined in the directory to any previous ones - defined_case_list_fns = processCaseListDirectory( - case_list_dirname, study_id, logger, - prev_stableid_files=defined_case_list_fns) - - validate_defined_caselists( - study_id, list(defined_case_list_fns.keys()), - file_types=list(validators_by_meta_type.keys()), - logger=logger) - - # Validate the gene panel matrix file. This file is depending on clinical and case list data. - if cbioportal_common.MetaFileTypes.GENE_PANEL_MATRIX in validators_by_meta_type: - if len(validators_by_meta_type[cbioportal_common.MetaFileTypes.GENE_PANEL_MATRIX]) > 1: - logger.error('Multiple gene panel matrix files detected') - else: - # pass stable_ids to data file - validators_by_meta_type[cbioportal_common.MetaFileTypes.GENE_PANEL_MATRIX][0].validate() - - # next validate all other data files - for meta_file_type in sorted(validators_by_meta_type): - # skip cancer type and clinical files, they have already been validated - if meta_file_type in (cbioportal_common.MetaFileTypes.CANCER_TYPE, - cbioportal_common.MetaFileTypes.SAMPLE_ATTRIBUTES, - cbioportal_common.MetaFileTypes.RESOURCES_DEFINITION, - cbioportal_common.MetaFileTypes.SAMPLE_RESOURCES, - cbioportal_common.MetaFileTypes.GENE_PANEL_MATRIX): - continue - for validator in sorted( - validators_by_meta_type[meta_file_type], - key=lambda validator: validator and validator.filename): - # if there was no validator for this meta file - if validator is None: - continue - validator.validate() - - # additional validation between meta files, after all meta files are processed - validate_data_relations(validators_by_meta_type, logger) - - logger.info('Validation complete') - - -def get_pom_path(): - """ - Get location of pom.xml. In system and integration test this is mocked. - """ - pom_path = os.path.dirname(os.path.dirname(os.path.dirname(os.path.dirname(os.path.dirname(os.path.dirname(os.path.realpath(__file__))))))) + "/pom.xml" - return pom_path - -def main_validate(args): - - """Main function: process parsed arguments and validate the study.""" - # get a logger to emit messages - logger = logging.getLogger(__name__) - logger.setLevel(logging.DEBUG) - exit_status_handler = MaxLevelTrackingHandler() - logger.addHandler(exit_status_handler) - - # process the options - study_dir = args.study_directory - server_url = args.url_server - - html_output_filename = args.html_table - relaxed_mode = args.relaxed_clinical_definitions - strict_maf_checks = args.strict_maf_checks - - # determine the log level for terminal and html output - output_loglevel = logging.INFO - if args.verbose: - output_loglevel = logging.DEBUG - - # check existence of directory - if not os.path.exists(study_dir): - print('directory cannot be found: ' + study_dir, file=sys.stderr) - return 2 - - # set default message handler - text_handler = logging.StreamHandler(sys.stdout) - text_handler.setFormatter( - cbioportal_common.LogfileStyleFormatter(study_dir)) - collapsing_text_handler = cbioportal_common.CollapsingLogMessageHandler( - capacity=5e5, - flushLevel=logging.CRITICAL, - target=text_handler) - collapsing_text_handler.setLevel(output_loglevel) - logger.addHandler(collapsing_text_handler) - - collapsing_html_handler = None - html_handler = None - # add html table handler if applicable - if html_output_filename: - # just to make sure users get dependency error at start: - import jinja2 # pylint: disable=import-error - - html_handler = Jinja2HtmlHandler( - study_dir, - html_output_filename, - capacity=1e5) - # TODO extend CollapsingLogMessageHandler to flush to multiple targets, - # and get rid of the duplicated buffering of messages here - collapsing_html_handler = cbioportal_common.CollapsingLogMessageHandler( - capacity=5e5, - flushLevel=logging.CRITICAL, - target=html_handler) - collapsing_html_handler.setLevel(output_loglevel) - logger.addHandler(collapsing_html_handler) - - if args.error_file: - errfile_handler = logging.FileHandler(args.error_file, 'w') - errfile_handler.setFormatter(ErrorFileFormatter(study_dir)) - # TODO extend CollapsingLogMessageHandler to flush to multiple targets, - # and get rid of the duplicated buffering of messages here - coll_errfile_handler = cbioportal_common.CollapsingLogMessageHandler( - capacity=5e5, - flushLevel=logging.CRITICAL, - target=errfile_handler) - coll_errfile_handler.setLevel(logging.WARNING) - coll_errfile_handler.addFilter(LineMessageFilter()) - logger.addHandler(coll_errfile_handler) - - # load portal-specific information - if args.no_portal_checks: - portal_instance = PortalInstance(portal_info_dict=None, - cancer_type_dict=None, - hugo_entrez_map=None, - alias_entrez_map=None, - gene_set_list=None, - gene_panel_list=None, - geneset_version =None) - elif args.portal_info_dir: - portal_instance = load_portal_info(args.portal_info_dir, logger, - offline=True) - else: - portal_instance = load_portal_info(server_url, logger) - - # set portal version - cbio_version = portal_instance.portal_version - - validate_study(study_dir, portal_instance, logger, relaxed_mode, strict_maf_checks) - - if html_handler is not None: - # flush logger and generate HTML while overriding cbio_version after retrieving it from the API - collapsing_html_handler.flush() - html_handler.generateHtml(cbio_version=cbio_version) - - return exit_status_handler.get_exit_status() - - -def _get_column_index(parts, name): - for i, part in enumerate(parts): - if name == part: - return i - return -1 - - -if __name__ == '__main__': - try: - # parse command line options - parsed_args = interface() - # run the script - exit_status = main_validate(parsed_args) - finally: - logging.shutdown() - del logging._handlerList[:] # workaround for harmless exceptions on exit - print(('Validation of study {status}.'.format( - status={0: 'succeeded', - 1: 'failed', - 2: 'not performed as problems occurred', - 3: 'succeeded with warnings'}.get(exit_status, 'unknown'))), file=sys.stderr) - sys.exit(exit_status) diff --git a/core/src/main/scripts/importer/validateStudies.py b/core/src/main/scripts/importer/validateStudies.py deleted file mode 100755 index 1b7d9a8b0d5..00000000000 --- a/core/src/main/scripts/importer/validateStudies.py +++ /dev/null @@ -1,195 +0,0 @@ -#!/usr/bin/env python3 - -""" -Copyright (c) 2018 The Hyve B.V. -This code is licensed under the GNU Affero General Public License (AGPL), -version 3, or (at your option) any later version. -""" - -import argparse -import os -import traceback -import tempfile -import datetime -import sys -import subprocess - -def main(args): - """Process arguments and run validation""" - - # Set variables for directory and list of studies - root_dir = args.root_directory - studies = args.list_of_studies - - # If studies are filled in, create a list - if studies is not None: - list_studies = [str(study) for study in studies.split(',')] - - # Get all studies in root directory if no list of studies is defined - if root_dir is not None and studies is None: - list_studies = [] - for study_dir in os.listdir(root_dir): - if os.path.isdir(os.path.join(root_dir, study_dir)): - list_studies.append(os.path.join(root_dir, study_dir)) - - # When both root directory and list of studies are given, create list of study files - if root_dir is not None and studies is not None and os.path.dirname != "normals": - list_studies = [os.path.join(root_dir, study) for study in list_studies] - - # Get current date and time to write to logfilename - d_date = datetime.datetime.now() - reg_format_date = d_date.strftime("%Y-%m-%d_%H:%M") - only_logfilename = 'log-validate-studies-' + reg_format_date + '.txt' - - # When html folder is given as input, check if html folder exists, otherwise create folder - # Also, when html folder is defined the logfile is written to this folder as well, otherwise to /tmp - output_folder = args.html_folder - if output_folder is not None: - if not os.path.exists(output_folder): - print("HTML output folder did not exist, so is created: %s" % output_folder) - os.makedirs(output_folder) - logfilename = os.path.join(output_folder, only_logfilename) - else: - # Get systems temp directory and write log file - logfilename = os.path.join(tempfile.gettempdir(), only_logfilename) - print('\nWriting validation logs to: {}'.format(logfilename)) - - # Make dictionary of possible exit status from validateData and values that should be printed in the console - # when these exit statuses occur - possible_exit_status = {0: 'VALID', 1: 'INVALID', 2: 'INVALID (PROBLEMS OCCURRED)', 3: 'VALID (WITH WARNINGS)'} - # This script can have two possible exit statuses 0 or 1. The validation exit status from this script - # will become 1 when one of the studies fails validation. This will be when validateData has for at - # least one of the studies validated exit status 1 or 2 or when another error occurred during the validation - validation_exit_status = 0 - # Go through list of studies and run validation - for study in list_studies: - # Write to stdout and log file that we are validating this particular study - print("\n=== Validating study %s" %study) - - # Check which portal info variable is given as input, and set correctly in the arguments for validateData - if args.portal_info_dir is not None: - validator_args = ['-v', '--study_directory', study, '-p', args.portal_info_dir] - elif args.no_portal_checks: - validator_args = ['-v', '--study_directory', study, '-n'] - else: - validator_args = ['-v', '--study_directory', study, '-u', args.url_server] - - # Append argument for portal properties file if given at input - if args.portal_properties is not None: - validator_args.append('-P') - validator_args.append(args.portal_properties) - - # Append argument for strict mode when supplied by user - if args.strict_maf_checks is not False: - validator_args.append('-m') - - # When HTML file is required, create html file name and add to arguments for validateData - if output_folder is not None: - try: - html = "" - # Look in meta_study file for study name to add to name of validation report - with open(os.path.join(study, "meta_study.txt"), 'r') as meta_study: - for line in meta_study: - if 'cancer_study_identifier' in line: - study_identifier = line.split(':')[1].strip() - html = study_identifier + "-validation.html" - # If in the meta_study file no cancer_study_identifier could be found append study name from input - if html == "": - only_study = study.split("/")[-1] - html = only_study + "-validation.html" - - # Add path to HTML file name and add to arguments for validateData - html_file = os.path.join(output_folder, html) - validator_args.append('--html') - validator_args.append(html_file) - - # Exception can be thrown when the supplied study folder does not exist, when there is no meta_study - # file or when there is no cancer_study_identifier and it will not create the HTML file at all. - except: - var_traceback = traceback.format_exc() - print('\x1b[31m' + "Error occurred during creating html file name:") - print(var_traceback) - print("Validation from study " + study + " will not be written to HTML file" + '\x1b[0m') - - # Get the path to the validator , in the same directory as this script - validation_script = os.path.join( - os.path.dirname(os.path.realpath(__file__)), - 'validateData.py') - # Run validateData on this study and get the exit status - try: - with open(logfilename, 'a') as log_file: - log_file.write('=== Validation study: {}\n'.format(study)) - log_file.flush() - exit_status_study = subprocess.call( - [sys.executable, '--', validation_script] + validator_args, - stdout=log_file) - # If opening the log file or executing the script failed, - except OSError: - # Output the Python stack trace for the error - traceback.print_exc(file=sys.stdout) - # And mark this run as not validated - exit_status_study = 2 - - # Check exit status and print result - exit_status_message = possible_exit_status.get(exit_status_study, 'Unknown status: {}'.format(exit_status_study)) - if exit_status_study == 0 or exit_status_study == 3: - print('\x1b[0m' + "Result: %s" % exit_status_message) - else: - print('\x1b[0m' + "Result: " + '\x1b[31m' + exit_status_message + '\x1b[0m') - validation_exit_status = 1 # When invalid check the exit status to one, for failing circleCI - - return validation_exit_status - - -def interface(args=None): - """Parse arguments from input""" - - parser = argparse.ArgumentParser(description='Wrapper where cBioPortal study validator is run for multiple studies') - parser.add_argument('-d', '--root-directory', - type=str, help='Path to directory with all studies that should be validated') - parser.add_argument('-l', '--list-of-studies', - type=str, help='List with paths of studies which should be validated') - parser.add_argument('-html', '--html-folder', - type=str, help='Path to folder for output HTML reports') - # Only one of the portal arguments can be given, therefore set as mutually exclusive group - portal_mode_group = parser.add_mutually_exclusive_group() - portal_mode_group.add_argument('-u', '--url_server', - type=str, - default='http://localhost:8080', - help='URL to cBioPortal server. You can ' - 'set this if your URL is not ' - 'http://localhost:8080') - portal_mode_group.add_argument('-p', '--portal_info_dir', - type=str, - help='Path to a directory of cBioPortal ' - 'info files to be used instead of ' - 'contacting a server') - portal_mode_group.add_argument('-n', '--no_portal_checks', - action='store_true', - help='Skip tests requiring information ' - 'from the cBioPortal installation') - parser.add_argument('-P', '--portal_properties', type=str, - help='portal.properties file path (default: assumed hg19)', - required=False) - - parser.add_argument('-m', '--strict_maf_checks', required=False, - action='store_true', default=False, - help='Option to enable strict mode for validator when ' - 'validating mutation data') - - args = parser.parse_args(args) - - # Check if -d or -l was given as input, otherwise let the parser give an error and stop - if not (args.root_directory or args.list_of_studies): - parser.error('No action requested, add -d or -l') - - return args - - -if __name__ == '__main__': - parsed_args = interface() - exit_status = main(parsed_args) - - print("\n\nOverall exit status: %s" %exit_status) - sys.exit(exit_status) - diff --git a/core/src/main/scripts/importer/validation_report_template.html.jinja b/core/src/main/scripts/importer/validation_report_template.html.jinja deleted file mode 100644 index 228fb08a95a..00000000000 --- a/core/src/main/scripts/importer/validation_report_template.html.jinja +++ /dev/null @@ -1,264 +0,0 @@ - - - - - - - - - - - - - cBioPortal validation report: study in '{{ study_dir }}' - - - - - -

    -
    -
    -

    cBioPortal validation report

    -

    Study directory:
    {{ study_dir }}

    -

    For details, please see the documentation on file formats supported by cBioPortal

    -

    cBioPortal version {{ cbio_version }}

    -
    -
    - - {% macro level_icon(level) %} - {% set glyphicon_name = { - 'danger': 'glyphicon-remove', - 'warning': 'glyphicon-warning-sign', - 'success': 'glyphicon-ok', - 'info': 'glyphicon-cog'}[level] %} - {% set glyphicon_alt = { - 'danger': 'Error', - 'warning': 'Warning', - 'success': 'Info', - 'info': 'Debug'}[level] -%} - {{ glyphicon_alt }} - {%- endmacro %} - -
    -
    - {% if max_level in ['ERROR','CRITICAL'] %} - {% set study_level = 'danger' %} - {% elif max_level == 'WARNING' %} - {% set study_level = 'warning' %} - {% elif max_level == 'INFO' %} - {% set study_level = 'success' %} - {% else %} - {% set study_level = 'info' %} - {% endif %} -
    - Validation status: - - {% if study_level == 'danger' %} - Failed - {% elif study_level == 'warning' %} - Please check - {% elif study_level == 'success' %} - Success - {% else %} - Unknown - {% endif %} - -
    - -
    - {% macro generate_group_html(filename, file_record_list) %} - {% set file_level_list = file_record_list|map(attribute='levelname')|list %} - {% if 'ERROR' in file_level_list or 'CRITICAL' in file_level_list %} - {% set file_level = 'danger' %} - {% elif 'WARNING' in file_level_list %} - {% set file_level = 'warning' %} - {# I can't think of a way to check if any values are not INFO right now #} - {% elif 'INFO' in file_level_list %} - {% set file_level = 'success' %} - {% else %} - {% set file_level = 'info' %} - {% endif %} -
    - -
    -
    - - - - - - - - - - - - - {% for record in file_record_list %} - {% if record.levelname == 'ERROR' or record.levelname == 'CRITICAL' %} - {% set record_class = 'danger' %} - {% elif record.levelname == 'WARNING' %} - {% set record_class = 'warning' %} - {% elif record.levelname == 'INFO' %} - {% set record_class = 'success' %} - {% else %} - {% set record_class = 'info' %} - {% endif %} - - {% macro format_aggregated(record, attr_name) %} - {% if record[attr_name + '_list'] is defined -%} - {% if (record['show_all_values'] is not defined or record['show_all_values'] == False) and (record[attr_name + '_list']|length) > 3 -%} - {{ record[attr_name + '_list'][:3]|join(', ')|e }}{{ '…' }} - {%- else -%} - {{ (record[attr_name + '_list']|join(', '))|e }} - {%- endif %} - {%- elif record[attr_name] is defined -%} - {{ record[attr_name]|e }} - {%- else -%} - – - {%- endif %} - {% endmacro %} - - - {% if record['column_name_list'] is defined or record['column_name'] is defined %} - - {% else %} - - {% endif %} - - - {% macro create_modal(filename, record, attr_name, num_record) %} - {% if record[attr_name + '_list'] is defined -%} - {% if (record['show_all_values'] is not defined or record['show_all_values'] == False) and (record[attr_name + '_list']|length) > 3 -%} - - {% set num_values = record[attr_name + '_list']|length|string %} - {% set modal_name = "modal" + filename.rsplit('.', 1)[0] + num_record + attr_name %} - See all {{ num_values }} values - -
    Line NumberColumn NumberMessageValue Encountered
    {{ level_icon(record_class) }}{{ format_aggregated(record, 'line_number') }}{{ format_aggregated(record, 'column_number') }}
    Column names: {{ format_aggregated(record, 'column_name') }}    		{{ format_aggregated(record, 'column_number') }}{{ record.getMessage()|e }}{{ format_aggregated(record, 'cause') }}
    - - - - - - - - - {% for value in record[attr_name + '_list'] %} - - - - - - {% endfor %} - -
    Line NumberColumn NumberValue Encountered
    {{ value[0]|e if value[0] is not none else '–' }}{{ value[1]|e if value[1] is not none else '–' }}{{ value[2]|e if value[2] is not none else '–' }}
    -
    -
    -
    -
    - {%- endif %} - {%- endif %} - {% endmacro %} - {{ create_modal(filename, record, 'value', loop.index|string) }} - - {% endfor %} - - -
    -
    -
    - - {% endmacro %} - {% set fileless_record_list = record_list|selectattr('filename_', 'undefined')|list -%} - {{ generate_group_html('General', fileless_record_list) }} - {% set filerelated_record_list = record_list|selectattr('filename_', 'defined') %} - {% for file_record_group in filerelated_record_list|groupby('filename_') -%} - {{ generate_group_html( - file_record_group.grouper.strip()|os.path.relpath(study_dir), - file_record_group.list) }} - {%- endfor %} - - - - -
    -
    -

    Legend

    -
    -
    -

    - Click on a filename below to see a table of messages about the data - in the file. The colors in the tables have the following meanings: -

    - - - - - - - - - - - - - - - - - - - -
    {{ level_icon('danger') }}Error: cBioPortal will not know how to load this, please revise or remove
    {{ level_icon('warning') }}Warning: possible cause of confusion, please check whether this is intended
    {{ level_icon('success') }}Info: this looks good, no action required
    {{ level_icon('info') }}Verbose output: details on the progress of the validation script
    -
    -
    - - - diff --git a/core/src/main/scripts/init.sh b/core/src/main/scripts/init.sh deleted file mode 100755 index dec485af4c7..00000000000 --- a/core/src/main/scripts/init.sh +++ /dev/null @@ -1,21 +0,0 @@ -# First, verify if all symbols in the sample genesets are latest -#./verifyGeneSets.pl $PORTAL_DATA_HOME/reference-data/human-genes.txt - -# Clear the Database -./resetDb.pl - -# Load up Entrez Genes -./importGenes.pl $PORTAL_DATA_HOME/reference-data/human-genes.txt $PORTAL_DATA_HOME/reference-data/id_mapping_mirbase.txt $PORTAL_DATA_HOME/reference-data/all_exon_loci.bed - -# Load up Cancer Types -./importTypesOfCancer.pl $PORTAL_DATA_HOME/reference-data/public-cancers.txt - -# Network -./loadNetwork.sh - -# Drug -./importPiHelperData.pl - -# Cosmic -# ./prepareCosmicData.sh -./importCosmicData.pl $PORTAL_DATA_HOME/reference-data/CosmicCodingMuts.vcf diff --git a/core/src/main/scripts/loadNetwork.sh b/core/src/main/scripts/loadNetwork.sh deleted file mode 100755 index b9169c0f636..00000000000 --- a/core/src/main/scripts/loadNetwork.sh +++ /dev/null @@ -1,5 +0,0 @@ -./importHprd.pl $PORTAL_DATA_HOME/reference-data/network/HPRD.tsv -#./importSif.pl $PORTAL_DATA_HOME/reference-data/network/cell-map.sif CELLMAP -#./importSif.pl $PORTAL_DATA_HOME/reference-data/network/nci-nature.sif NCI_NATURE -#./importSif.pl $PORTAL_DATA_HOME/reference-data/network/reactome.sif REACTOME -./importSif.pl $PORTAL_DATA_HOME/reference-data/network/reactome.sif REACTOME diff --git a/core/src/main/scripts/loadSampleData.sh b/core/src/main/scripts/loadSampleData.sh deleted file mode 100755 index e38bcfdd4da..00000000000 --- a/core/src/main/scripts/loadSampleData.sh +++ /dev/null @@ -1,42 +0,0 @@ -################################################# -# Inits and Loads a Small Subset of GBM Data -# -# This script loads up sample data located in: -# portal/sample_data -################################################# - -SAMPLE_DATA=$PORTAL_HOME/portal/src/main/resources/sample_data -TEST_DATA=$PORTAL_HOME/portal/src/test/resources - -# Clear the Database -./resetDb.pl - -# Load up Entrez Genes -./importGenes.pl $SAMPLE_DATA/genes/human_genes.txt - -# Load Entrez Gene ID --> UniProt ID mapping -./importUniProtIdMapping.pl $SAMPLE_DATA/genes/uniprot_id_mapping.txt - -# Load up All Cancer Types -./importTypesOfCancer.pl $SAMPLE_DATA/cancers.txt - -# Load up the GBM Meta Data File -./importCancerStudy.pl $SAMPLE_DATA/gbm/gbm.txt - -# Load Cases and Clinical Data -./importCaseList.pl $SAMPLE_DATA/gbm/case_lists -./importClinicalData.pl $SAMPLE_DATA/gbm/GBM_clinical_portal_20110210.txt gbm - -# Load Mutation Data -./importProfileData.pl --data $SAMPLE_DATA/gbm/data_mutations_MAF.txt --meta $SAMPLE_DATA/gbm/meta_mutations_MAF.txt --dbmsAction clobber - -# Load CNA Data -./importProfileData.pl --data $SAMPLE_DATA/gbm/data_CNA_consensus.txt --meta $SAMPLE_DATA/gbm/meta_CNA_consensus.txt --dbmsAction clobber - -# Load network data -#./importSif.pl $SAMPLE_DATA/network/cell-map.sif CELLMAP -#./importSif.pl $SAMPLE_DATA/network/nci-nature.sif NCI_NATURE -./importSif.pl $SAMPLE_DATA/network/reactome.sif REACTOME - -# Load MutSig data -./importMutSig.pl $TEST_DATA/test_mut_sig_data.txt $TEST_DATA/testCancerStudy.txt diff --git a/core/src/main/scripts/massagePortalDataForCancerStudies.pl b/core/src/main/scripts/massagePortalDataForCancerStudies.pl deleted file mode 100644 index 0c62da1b481..00000000000 --- a/core/src/main/scripts/massagePortalDataForCancerStudies.pl +++ /dev/null @@ -1,231 +0,0 @@ -#!/usr/bin/perl - -use strict; -use warnings; -use File::Spec; -use File::Util; -use Data::Dumper; -use File::Temp qw/ tempfile /; - -# root -my $rootDir = File::Spec->catfile( File::Spec->updir(), File::Spec->curdir(), qw( data ) ); -# $rootDir = '/tmp/data'; - -my $fileUtil = File::Util->new(); -my $cancers = File::Spec->catfile( $rootDir, qw( cancers.txt ) ); -my @cancersFile = $fileUtil->load_file( $cancers, '--as-lines'); -my $cancerTypes = {}; -foreach my $cancer (@cancersFile){ - my( $ctype, $desc) = split( /:/, $cancer ); - $ctype =~ s/^\s+//; - $ctype =~ s/\s+$//; - $cancerTypes->{$ctype} = 1; -} - -# find files -# for files of form (cancer_name/cancer_name).txt: -my @allFiles = $fileUtil->list_dir( $rootDir, '--recurse', '--files-only' ); -my @studyFiles; -foreach my $f (@allFiles){ - if( $f =~ m|/(\w+).txt$| ){ - if( $f =~ m|$1/$1.txt$| ){ - push @studyFiles, $f; - } - } -} - -# cancer_type_id: BC => type_of_cancer: \1 -# cancer_type_id: BC => cancer_study_identifier: \1_portal -# check that cancer_name is in cancers -my $cnMap = { - 'BC' => 'brca', - 'Sarc' => 'sarc', - 'ova' => 'ov', - 'pca' => 'PRAD' -}; -foreach my $sf (@studyFiles){ - print "$sf\n"; - my $studyFile = $fileUtil->load_file( $sf ); - my $t = $studyFile; - if( $studyFile =~ /cancer_type_id\s*:\s*(\w+)/ ){ - my $ct = toCT( $1 ); - my $stu_id = toCT( $1 ) . '_portal'; - $studyFile =~ s/cancer_type_id\s*:\s*(\w+)/type_of_cancer: $ct\ncancer_study_identifier: $stu_id/; - # print "changing:\n$t\nto:\n$studyFile\n"; - print "changing: '$sf' => type_of_cancer: $ct, cancer_study_identifier: $stu_id\n"; - } - $fileUtil->write_file('file' => $sf, 'content' => $studyFile ); -} - -# cancer_type_id: BC => cancer_study_identifier: \1_portal -foreach my $fn (@allFiles){ - open my $fh, "<", "$fn" or die $!; - my ($tempFH, $tempFile) = tempfile(); - - # file - while( my $line = <$fh> ){ - my $t = $line; - if( $line =~ /cancer_type_id\s*:\s*(\w+)/ ){ - my $stu_id = toCT( $1 ) . '_portal'; - $line =~ s/cancer_type_id\s*:\s*(\w+)/cancer_study_identifier: $stu_id/; - print "changing: '$fn' => cancer_study_identifier: $stu_id\n"; -# print "changing:\n$t\nto:\n$line\n"; - } - print $tempFH $line; - } - - close $fh; - close $tempFH; - system( "mv $tempFile $fn"); -} - -sub toCT{ - my( $ct ) = @_; - if( $cnMap->{$ct} ){ - $ct = $cnMap->{$ct}; - } - $ct = uc( $ct ); - unless( exists( $cancerTypes->{$ct} ) ) { - warn "$ct not in cancer types\n"; - } - return $ct; -} - -## CHANGES: -# ../data/breast/breast.txt -# changing: '../data/breast/breast.txt' => type_of_cancer: BRCA, cancer_study_identifier: BRCA_portal -# ../data/gbm/gbm.txt -# changing: '../data/gbm/gbm.txt' => type_of_cancer: GBM, cancer_study_identifier: GBM_portal -# ../data/ovarian/ovarian.txt -# changing: '../data/ovarian/ovarian.txt' => type_of_cancer: OV, cancer_study_identifier: OV_portal -# ../data/prostate/prostate.txt -# changing: '../data/prostate/prostate.txt' => type_of_cancer: PRAD, cancer_study_identifier: PRAD_portal -# ../data/sarcoma/sarcoma.txt -# changing: '../data/sarcoma/sarcoma.txt' => type_of_cancer: SARC, cancer_study_identifier: SARC_portal -# changing: '../data/breast/case_lists/cases_DBCG.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_DBCG_mRNA.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_DCIS.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_DCIS_ERneg.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_DCIS_ERpos.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_FW.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_FW_mRNA.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T1.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T1_ERneg.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T1_ERpos.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T2.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T2_ERneg.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T2_ERpos.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T3.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T3_ERneg.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_IDC_T3_ERpos.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_MDG.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_MDG_mRNA.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_MicMa.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_MicMa_mRNA.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_Normal.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_PIK3CA_Sequenced.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_ULL.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_ULL_mRNA.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_all.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/case_lists/cases_tumors.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/meta_aCGH.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/meta_mRNA_DBCG.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/meta_mRNA_DBCG_Z.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/meta_mRNA_FW_MDG.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/meta_mRNA_MicMa.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/meta_mRNA_ULL.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/breast/meta_mutations.txt' => cancer_study_identifier: BRCA_portal -# changing: '../data/gbm/case_lists/cases_all.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_all_three.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_expression_classical.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_expression_mesenchymal.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_expression_neural.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_expression_proneural.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_seq_manuscript.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_seq_no_hypermut.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_seq_not_treated.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/case_lists/cases_seq_treated.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/data_clinical.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/meta_CNA_RAE.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/meta_CNA_consensus.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/meta_mRNA.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/meta_mRNA_ZbyDiploidTumors.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/meta_miRNA.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/meta_mutations.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/gbm/meta_mutations_MAF.txt' => cancer_study_identifier: GBM_portal -# changing: '../data/ovarian/case_lists/cases_CGH.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_all.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_complete.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_expression_cluster1.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_expression_cluster2.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_expression_cluster3.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_expression_cluster4.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_mRNA.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_methylation_cluster1.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_methylation_cluster2.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_methylation_cluster3.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_methylation_cluster4.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_normal_mRNA.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_protein.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/case_lists/cases_sequenced.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_CNA.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_CNA_RAE.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_brca1_binary_methylation.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_mRNA_median.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_mRNA_median_Zscores.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_mRNA_unified.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_mRNA_unified_Zscores.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_methylation.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_miRNA.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_miRNA_median_Zscores.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_mutations.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_mutations_BRCA.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_mutations_extended.txt' => cancer_study_identifier: OV_portal -# changing: '../data/ovarian/meta_protein.txt' => cancer_study_identifier: OV_portal -# changing: '../data/prostate/case_lists/cases_all_list.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_all_three.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_cell_lines.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_cluster1.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_cluster2.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_cluster3.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_cluster4.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_cluster5.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_cluster6.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_copy_number_nonflat.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_flat.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_mRNA.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_mRNA_mets.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_mRNA_primaries.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_mRNA_tumors.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_metastatic.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_metastatic_castrate.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_metastatic_non-castrate.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_miRNA.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_normal_mRNA.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_primary.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_sequenced_all.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_sequenced_w_normal.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/case_lists/cases_tumors.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_CNA.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_mRNA.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_mRNA_ZbyNorm.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_mRNA_outliers.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_miRNA.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_miRNA_ZbyNorm.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_miRNA_outliers.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/prostate/meta_mutations.txt' => cancer_study_identifier: PRAD_portal -# changing: '../data/sarcoma/case_lists/cases_DDLPS.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_GIST.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_LMS.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_MFH.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_MYXOID.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_PLEO.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_SYNOVIAL.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_all.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_all_tumors.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/case_lists/cases_normal_fat.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/meta_CNA.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/meta_mrna.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/meta_mrna_ZbyNormals.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/meta_mrna_outlier.txt' => cancer_study_identifier: SARC_portal -# changing: '../data/sarcoma/meta_mutations.txt' => cancer_study_identifier: SARC_portal diff --git a/core/src/main/scripts/migrate_db.py b/core/src/main/scripts/migrate_db.py deleted file mode 100755 index 6ae0463d249..00000000000 --- a/core/src/main/scripts/migrate_db.py +++ /dev/null @@ -1,453 +0,0 @@ -#!/usr/bin/env python3 - -import os -import re -import sys -import contextlib -import argparse -from collections import OrderedDict - -from importer.cbioportal_common import get_database_properties, get_db_cursor - -import MySQLdb -from pathlib import Path - -# globals -ERROR_FILE = sys.stderr -OUTPUT_FILE = sys.stdout -VERSION_TABLE = 'info' -VERSION_FIELD = 'DB_SCHEMA_VERSION' -ALLOWABLE_GENOME_REFERENCES = ['37', 'hg19', 'GRCh37', '38', 'hg38', 'GRCh38', 'mm10', 'GRCm38'] -DEFAULT_GENOME_REFERENCE = 'hg19' -MULTI_REFERENCE_GENOME_SUPPORT_MIGRATION_STEP = (2, 11, 0) -GENERIC_ASSAY_MIGRATION_STEP = (2, 12, 1) -SAMPLE_FK_MIGRATION_STEP = (2, 12, 9) -FUSIONS_VERBOTEN_STEP = (2, 12, 14) - - -class PortalProperties(object): - """ Properties object class, just has fields for db conn """ - - def __init__(self, database_user, database_pw, database_url): - self.database_user = database_user - self.database_pw = database_pw - self.database_url = database_url - - -def get_db_version(cursor): - """ gets the version number of the database """ - # First, see if the version table exists - version_table_exists = False - try: - cursor.execute('select table_name from information_schema.tables') - for row in cursor.fetchall(): - if VERSION_TABLE == row[0].lower().strip(): - version_table_exists = True - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - return None - if not version_table_exists: - return (0, 0, 0) - # Now query the table for the version number - try: - cursor.execute('select ' + VERSION_FIELD + ' from ' + VERSION_TABLE) - for row in cursor.fetchall(): - version = tuple(map(int, row[0].strip().split('.'))) - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - return None - return version - - -def is_version_larger(version1, version2): - """ Checks if version 1 is larger than version 2 """ - if version1[0] > version2[0]: - return True - if version2[0] > version1[0]: - return False - if version1[1] > version2[1]: - return True - if version2[1] > version1[1]: - return False - if version1[2] > version2[2]: - return True - return False - - -def is_version_equal(version1, version2): - """ Checks if version 1 is equal to version 2""" - return version1[0] == version2[0] and version1[1] == version2[1] and version1[2] == version2[2] - - -def print_all_check_reference_genome_warnings(warnings, force_migration): - """ Format warnings for output according to mode, and print to ERROR_FILE """ - space = ' ' - indent = 28 * space - allowable_reference_genome_string = ','.join(ALLOWABLE_GENOME_REFERENCES) - clean_up_string = ' Please clean up the mutation_event table and ensure it only contains references to one of the valid reference genomes (%s).' % ( - allowable_reference_genome_string) - use_default_string = 'the default reference genome (%s) will be used in place of invalid reference genomes and the first encountered reference genome will be used.' % ( - DEFAULT_GENOME_REFERENCE) - use_force_string = 'OR use the "--force" option to override this warning, then %s' % (use_default_string) - forcing_string = '--force option in effect : %s' % (use_default_string) - for warning in warnings: - if force_migration: - print('%s%s\n%s%s\n' % (indent, warning, indent, forcing_string), file=ERROR_FILE) - else: - print('%s%s%s\n%s%s\n' % (indent, warning, clean_up_string, indent, use_force_string), file=ERROR_FILE) - - -def validate_reference_genome_values_for_study(warnings, ncbi_to_count, study): - """ check if there are unrecognized or varied ncbi_build values for the study, add to warnings if problems are found """ - if len(ncbi_to_count) == 1: - for retrieved_ncbi_build in ncbi_to_count: # single iteration - if retrieved_ncbi_build.upper() not in [x.upper() for x in ALLOWABLE_GENOME_REFERENCES]: - msg = 'WARNING: Study %s contains mutation_event records with unsupported NCBI_BUILD value %s.' % ( - study, retrieved_ncbi_build) - warnings.append(msg) - elif len(ncbi_to_count) > 1: - msg = 'WARNING: Study %s contains mutation_event records with %s NCBI_BUILD values {ncbi_build:record_count,...} %s.' % ( - study, len(ncbi_to_count), ncbi_to_count) - warnings.append(msg) - - -def check_reference_genome(portal_properties, cursor, force_migration): - """ query database for ncbi_build values, aggregate per study, then validate and report problems """ - print('Checking database contents for reference genome information', file=OUTPUT_FILE) - """ Retrieve reference genomes from database """ - warnings = [] - try: - sql_statement = """ - select NCBI_BUILD, count(NCBI_BUILD), CANCER_STUDY_IDENTIFIER - from mutation_event - join mutation on mutation.MUTATION_EVENT_ID = mutation_event.MUTATION_EVENT_ID - join genetic_profile on genetic_profile.GENETIC_PROFILE_ID = mutation.GENETIC_PROFILE_ID - join cancer_study on cancer_study.CANCER_STUDY_ID = genetic_profile.CANCER_STUDY_ID - group by CANCER_STUDY_IDENTIFIER, NCBI_BUILD - """ - cursor.execute(sql_statement) - study_to_ncbi_to_count = {} # {cancer_study_identifier : {ncbi_build : record_count}} - for row in cursor.fetchall(): - retrieved_ncbi_build, ref_count, study = row - if study in study_to_ncbi_to_count: - study_to_ncbi_to_count[study][retrieved_ncbi_build] = ref_count - else: - study_to_ncbi_to_count[study] = {retrieved_ncbi_build: ref_count} - for study in study_to_ncbi_to_count: - validate_reference_genome_values_for_study(warnings, study_to_ncbi_to_count[study], study) - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - sys.exit(1) - if warnings: - print_all_check_reference_genome_warnings(warnings, force_migration) - if not force_migration: - sys.exit(1) - - -def check_and_exit_if_fusions(cursor): - try: - cursor.execute( - """ - SELECT COUNT(*) - FROM mutation_event - WHERE MUTATION_TYPE = "Fusion"; - """) - fusion_count = cursor.fetchone() - if (fusion_count[0] >= 1): - print( - 'Found %i records in the mutation_event table where the mutation_type was "Fusion". The latest database schema does not allow records in the mutation table where mutation_type is set to "Fusion". Studies linked to existing records of this type should be deleted in order to migrate to DB version 2.12.14' % ( - fusion_count), file=ERROR_FILE) - # get the list of studies that need to be cleaned up - cursor.execute( - """ - SELECT cancer_study.CANCER_STUDY_IDENTIFIER, COUNT(mutation.MUTATION_EVENT_ID) - FROM cancer_study, - genetic_profile - LEFT JOIN mutation ON genetic_profile.GENETIC_PROFILE_ID = mutation.GENETIC_PROFILE_ID - LEFT JOIN mutation_event ON mutation.MUTATION_EVENT_ID = mutation_event.MUTATION_EVENT_ID - WHERE - genetic_profile.CANCER_STUDY_ID = cancer_study.CANCER_STUDY_ID - AND mutation_event.MUTATION_TYPE = "Fusion" - GROUP BY cancer_study.CANCER_STUDY_IDENTIFIER - HAVING count(mutation.MUTATION_EVENT_ID) > 0 - """) - rows = cursor.fetchall() - print("The following studies have fusions in the mutation_event table:", file=ERROR_FILE) - for row in rows: - print("\t%s" % (row[0]), file=ERROR_FILE) - sys.exit(1) - - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - sys.exit(1) - - -# TODO: remove this after we update mysql version -def check_and_remove_invalid_foreign_keys(cursor): - try: - # if genetic_alteration_ibfk_2 exists - cursor.execute( - """ - SELECT * - FROM INFORMATION_SCHEMA.TABLE_CONSTRAINTS - WHERE CONSTRAINT_TYPE = 'FOREIGN KEY' - AND TABLE_SCHEMA = DATABASE() - AND CONSTRAINT_NAME = 'genetic_alteration_ibfk_2' - """) - rows = cursor.fetchall() - if (len(rows) >= 1): - # if genetic_alteration_fk_2 also exists, delete it - cursor.execute( - """ - SELECT * - FROM INFORMATION_SCHEMA.TABLE_CONSTRAINTS - WHERE CONSTRAINT_TYPE = 'FOREIGN KEY' - AND TABLE_SCHEMA = DATABASE() - AND CONSTRAINT_NAME = 'genetic_alteration_fk_2' - """) - rows = cursor.fetchall() - if (len(rows) >= 1): - print('Invalid foreign key found.', file=OUTPUT_FILE) - cursor.execute( - """ - ALTER TABLE `genetic_alteration` DROP FOREIGN KEY genetic_alteration_fk_2; - """) - print('Invalid foreign key has been deleted.', file=OUTPUT_FILE) - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - sys.exit(1) - - -def check_and_remove_type_of_cancer_id_foreign_key(cursor): - """The TYPE_OF_CANCER_ID foreign key in the sample table can be either sample_ibfk_1 or sample_ibfk_2. Figure out which one it is and remove it""" - try: - # if sample_ibfk_1 exists - cursor.execute( - """ - SELECT * - FROM INFORMATION_SCHEMA.REFERENTIAL_CONSTRAINTS - WHERE CONSTRAINT_SCHEMA = DATABASE() - AND TABLE_NAME = 'sample' - AND REFERENCED_TABLE_NAME = 'type_of_cancer' - AND CONSTRAINT_NAME = 'sample_ibfk_1' - """) - rows = cursor.fetchall() - if (len(rows) >= 1): - print( - 'sample_ibfk_1 is the foreign key in table sample for type_of_cancer_id column in table type_of_cancer.', - file=OUTPUT_FILE) - cursor.execute( - """ - ALTER TABLE `sample` DROP FOREIGN KEY sample_ibfk_1; - """) - print('sample_ibfk_1 foreign key has been deleted.', file=OUTPUT_FILE) - # if sample_ibfk_2 exists - cursor.execute( - """ - SELECT * - FROM INFORMATION_SCHEMA.REFERENTIAL_CONSTRAINTS - WHERE CONSTRAINT_SCHEMA = DATABASE() - AND TABLE_NAME = 'sample' - AND REFERENCED_TABLE_NAME = 'type_of_cancer' - AND CONSTRAINT_NAME = 'sample_ibfk_2' - """) - rows = cursor.fetchall() - if (len(rows) >= 1): - print( - 'sample_ibfk_2 is the foreign key in table sample for type_of_cancer_id column in table type_of_cancer.', - file=OUTPUT_FILE) - cursor.execute( - """ - ALTER TABLE `sample` DROP FOREIGN KEY sample_ibfk_2; - """) - print('sample_ibfk_2 foreign key has been deleted.', file=OUTPUT_FILE) - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - sys.exit(1) - - -def strip_trailing_comment_from_line(line): - line_parts = re.split("--\s", line) - return line_parts[0] - - -def run_migration(db_version, sql_filename, connection, cursor, no_transaction, stop_at_version=None): - """ - Goes through the sql and runs lines based on the version numbers. SQL version should be stated as follows: - - ##version: 1.0.0 - INSERT INTO ... - - ##version: 1.1.0 - CREATE TABLE ... - """ - sql_file = open(sql_filename, 'r') - sql_version = (0, 0, 0) - run_line = False - statements = OrderedDict() - statement = '' - for line in sql_file: - if line.startswith('##'): - sql_version = tuple(map(int, line.split(':')[1].strip().split('.'))) - # stop at the version specified - if stop_at_version is not None and is_version_equal(sql_version, stop_at_version): - break - else: - run_line = is_version_larger(sql_version, db_version) - continue - # skip blank lines - if len(line.strip()) < 1: - continue - # skip comments - if line.startswith('#'): - continue - # skip sql comments - if line.startswith('--') and len(line) > 2 and line[2].isspace(): - continue - # only execute sql line if the last version seen in the file is greater than the db_version - if run_line: - line = line.strip() - simplified_line = strip_trailing_comment_from_line(line) - statement = statement + ' ' + simplified_line - if simplified_line.endswith(';'): - if sql_version not in statements: - statements[sql_version] = [statement] - else: - statements[sql_version].append(statement) - statement = '' - if len(statements) > 0: - run_statements(statements, connection, cursor, no_transaction) - else: - print('Everything up to date, nothing to migrate.', file=OUTPUT_FILE) - - -def run_statements(statements, connection, cursor, no_transaction): - try: - if no_transaction: - cursor.execute('SET autocommit=1;') - else: - cursor.execute('SET autocommit=0;') - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - sys.exit(1) - for version, statement_list in statements.items(): - print( - 'Running statements for version: %s' % ('.'.join(map(str, version))), - file=OUTPUT_FILE) - for statement in statement_list: - print( - '\tExecuting statement: %s' % (statement.strip()), - file=OUTPUT_FILE) - try: - cursor.execute(statement.strip()) - except MySQLdb.Error as msg: - print(msg, file=ERROR_FILE) - sys.exit(1) - connection.commit() - - -def warn_user(): - """Warn the user to back up their database before the script runs.""" - response = input( - 'WARNING: This script will alter your database! Be sure to back up your data before running.\n' - 'Continue running DB migration? (y/n) ' - ).strip() - while response.lower() != 'y' and response.lower() != 'n': - response = input( - 'Did not recognize response.\nContinue running DB migration? (y/n) ' - ).strip() - if response.lower() == 'n': - sys.exit() - - -def usage(): - print( - 'migrate_db.py --properties-file [portal properties file] --sql [sql migration file]', - file=OUTPUT_FILE) - - -def main(): - """ main function to run mysql migration """ - parser = argparse.ArgumentParser(description='cBioPortal DB migration script') - parser.add_argument('-y', '--suppress_confirmation', default=False, action='store_true') - parser.add_argument('-p', '--properties-file', type=str, required=False, - help='Path to portal.properties file (default: locate it ' - 'relative to the script)') - parser.add_argument('-s', '--sql', type=str, required=False, - help='Path to official migration.sql script. (default: locate it ' - 'relative to the script)') - parser.add_argument('-f', '--force', default=False, action='store_true', help='Force to run database migration') - parser.add_argument('--no-transaction', default=False, action='store_true', help=""" - Do not run migration in a single transaction. Only use this when you known what you are doing!!! - """) - parser = parser.parse_args() - - properties_filename = parser.properties_file - if properties_filename is None: - # get the directory name of the currently running script, - # resolving any symlinks - script_dir = Path(__file__).resolve().parent - # go up from cbioportal/core/src/main/scripts/ to cbioportal/ - src_root = script_dir.parent.parent.parent.parent - properties_filename = src_root / 'portal.properties' - - sql_filename = parser.sql - if sql_filename is None: - # get the directory name of the currently running script, - # resolving any symlinks - script_dir = Path(__file__).resolve().parent - # go up from cbioportal/core/src/main/scripts/ to cbioportal/ - src_root = script_dir.parent.parent.parent.parent - sql_filename = src_root / 'db-scripts/src/main/resources/migration.sql' - - if not os.path.exists(sql_filename): - print('sql file %s cannot be found' % (sql_filename), file=ERROR_FILE) - usage() - sys.exit(2) - - # parse properties file - portal_properties = get_database_properties(properties_filename) - if portal_properties is None: - print('failure reading properties file (%s)' % properties_filename, file=ERROR_FILE) - sys.exit(1) - - # warn user - if not parser.suppress_confirmation: - warn_user() - - # set up - get db cursor - connection, cursor = get_db_cursor(portal_properties) - if cursor is None: - print('failure connecting to sql database', file=ERROR_FILE) - sys.exit(1) - - # execute - get the database version and run the migration - with contextlib.closing(connection): - db_version = get_db_version(cursor) - if is_version_larger(MULTI_REFERENCE_GENOME_SUPPORT_MIGRATION_STEP, db_version): - run_migration(db_version, sql_filename, connection, cursor, parser.no_transaction, - stop_at_version=MULTI_REFERENCE_GENOME_SUPPORT_MIGRATION_STEP) - # retrieve reference genomes from database - check_reference_genome(portal_properties, cursor, parser.force) - db_version = get_db_version(cursor) - if is_version_larger(SAMPLE_FK_MIGRATION_STEP, db_version): - run_migration(db_version, sql_filename, connection, cursor, parser.no_transaction, - stop_at_version=SAMPLE_FK_MIGRATION_STEP) - check_and_remove_type_of_cancer_id_foreign_key(cursor) - db_version = get_db_version(cursor) - if is_version_larger(FUSIONS_VERBOTEN_STEP, db_version): - run_migration(db_version, sql_filename, connection, cursor, parser.no_transaction, - stop_at_version=FUSIONS_VERBOTEN_STEP) - check_and_exit_if_fusions(cursor) - db_version = get_db_version(cursor) - run_migration(db_version, sql_filename, connection, cursor, parser.no_transaction) - # TODO: remove this after we update mysql version - # check invalid foreign key only when current db version larger or qeuals to GENERIC_ASSAY_MIGRATION_STEP - if not is_version_larger(GENERIC_ASSAY_MIGRATION_STEP, db_version): - check_and_remove_invalid_foreign_keys(cursor) - print('Finished.', file=OUTPUT_FILE) - - -# do main -if __name__ == '__main__': - main() diff --git a/core/src/main/scripts/mini_load_ova.sh b/core/src/main/scripts/mini_load_ova.sh deleted file mode 100755 index 31185b7d860..00000000000 --- a/core/src/main/scripts/mini_load_ova.sh +++ /dev/null @@ -1,12 +0,0 @@ -# Clear /Init the Database -./init.sh - -######################## -# Ovarian -######################## - -# Load up the Ovarian Meta Data File -./ImportCancerStudy.pl $PORTAL_DATA_HOME/ovarian/ovarian.txt -./importCaseList.pl $PORTAL_DATA_HOME/ovarian/case_lists -./importClinicalData.pl $PORTAL_DATA_HOME/ovarian/ova_clinical_20110211.txt ovarian -./importProfileData.pl --data $PORTAL_DATA_HOME/ovarian/data_CNA.txt --meta $PORTAL_DATA_HOME/ovarian/meta_CNA.txt --dbmsAction clobber diff --git a/core/src/main/scripts/ovarian/preprocess-all.py b/core/src/main/scripts/ovarian/preprocess-all.py deleted file mode 100755 index 65605890653..00000000000 --- a/core/src/main/scripts/ovarian/preprocess-all.py +++ /dev/null @@ -1,87 +0,0 @@ -#! /usr/bin/env python - -# ------------------------------------------------------------------------------ -# imports - -import os -import sys - -def processMRNA (originalFileName): - finalFileName = getFinalFileName (originalFileName) - if not os.path.exists(originalFileName): - sys.exit("error: cannot find file: " + originalFileName) - else: - print "Preparing mRNA Data file: %s --> %s " % (originalFileName, finalFileName) - os.system(BIN_DIR + "preprocess-mrna.py " + originalFileName + " > " + finalFileName) - -def processCNA (originalFileName): - rae_original_file = originalFileName; - rae_final_file = getFinalFileName (rae_original_file) - - if not os.path.exists(rae_original_file): - sys.exit("error: cannot find " + rae_original_file + ".") - else: - print "Preparing CNA RAE file: %s --> %s " % (rae_original_file, rae_final_file) - os.system(BIN_DIR + "preprocess-rae.py " + rae_original_file + " > " + rae_final_file) - -def getFinalFileName (originalFileName): - return originalFileName.replace("data_", "processed_") - -def convertCaseFile (caseInFile, caseOutFile): - print "Converting case file: %s --> %s." % (caseInFile, caseOutFile) - in_file = open (caseInFile) - out_file = open (caseOutFile, "w") - for line in in_file: - if line.startswith("case_list_ids:"): - line = line.replace ("case_list_ids:", "") - parts = line.split() - for part in parts: - print >> out_file, part.strip() - -# ------------------------------------------------------------------------------ -# check for cgds environment var - -CGDS_HOME = "CGDS_HOME" -PORTAL_DATA_HOME = "PORTAL_DATA_HOME"; -cgds_home_found = 0 -for key in os.environ.keys(): - if key == CGDS_HOME: - cgds_home_found = 1 - CGDS_HOME = os.environ[key] - if key == PORTAL_DATA_HOME: - PORTAL_DATA_HOME = os.environ[key] -if not cgds_home_found: - sys.exit("error: " + CGDS_HOME + " environment variable needs to be set") - -# ------------------------------------------------------------------------------ -# some globals/constants - -BIN_DIR = CGDS_HOME + "/scripts/ovarian/" -DATA_DIR = PORTAL_DATA_HOME + "/ovarian/" -GENE2ACCESSION = DATA_DIR + "gene2accession-cooked.txt" - -# ------------------------------------------------------------------------------ -# pre-process CNA file -#processCNA (DATA_DIR + "data_CNA.txt"); -#processCNA (DATA_DIR + "data_CNA_GISTIC_all.txt"); -#processCNA (DATA_DIR + "data_CNA_GISTIC_focal.txt"); - -# ------------------------------------------------------------------------------ -# pre-process mrna expression files - -#processMRNA (DATA_DIR + "data_mRNA_unified.txt") -#processMRNA (DATA_DIR + "data_mRNA_unified_outliers.txt") - -#processMRNA (DATA_DIR + "data_mRNA_unified_ZbyNormals.txt") -#processMRNA (DATA_DIR + "data_mRNA_unified_ZbyTumors.txt") - -#processMRNA (DATA_DIR + "data_mRNA_median.txt") -#processMRNA (DATA_DIR + "data_mRNA_median_outliers.txt") - -#processMRNA (DATA_DIR + "data_mRNA_median_ZbyNormals.txt") -#processMRNA (DATA_DIR + "data_mRNA_median_ZbyTumors.txt") - -# pre-process the necessary case lists required for the mutation data -# for this, we need cases_all_list.txt and cases_sequenced_with_normal.txt -convertCaseFile (DATA_DIR + "case_lists/cases_all.txt", DATA_DIR + "processed_all_cases.txt") -convertCaseFile (DATA_DIR + "case_lists/cases_sequenced.txt", DATA_DIR + "processed_sequenced_cases.txt") diff --git a/core/src/main/scripts/ovarian/preprocess-mrna.py b/core/src/main/scripts/ovarian/preprocess-mrna.py deleted file mode 100755 index 74b60e77071..00000000000 --- a/core/src/main/scripts/ovarian/preprocess-mrna.py +++ /dev/null @@ -1,29 +0,0 @@ -#! /usr/bin/env python -import sys - -OUTPUT_FILE = sys.stdout - -if len(sys.argv) < 1: - sys.exit("usage: ./preprocess-rae.py ") - -RAW_RAE_FILE = open(sys.argv[1], 'r') -line_count = 0 - -# Read in Raw RAE File -for line in RAW_RAE_FILE: - line = line.strip() - line_count = line_count + 1 - # first line is header - if line_count == 1: - print line - else: - parts = line.split("\t") - # ids look like this: A4GALT|53947 - # we only want the last part, which is the entrez gene id - ids = parts[0].split("|"); - entrez_gene_id = ids[1] - print "%s\t" % (entrez_gene_id), - the_rest = parts[1:] - for col in the_rest: - print (col + "\t"), - print diff --git a/core/src/main/scripts/ovarian/preprocess-rae.py b/core/src/main/scripts/ovarian/preprocess-rae.py deleted file mode 100755 index d12f33de527..00000000000 --- a/core/src/main/scripts/ovarian/preprocess-rae.py +++ /dev/null @@ -1,29 +0,0 @@ -#! /usr/bin/env python -import sys - -OUTPUT_FILE = sys.stdout - -if len(sys.argv) < 1: - sys.exit("usage: ./preprocess-rae.py ") - -RAW_RAE_FILE = open(sys.argv[1], 'r') -line_count = 0 - -# Read in Raw RAE File -for line in RAW_RAE_FILE: - line = line.strip() - line_count = line_count + 1 - # first line is header - if line_count == 1: - print line - else: - parts = line.split("\t") - # ids look like this: chr1:58953-59871|OR4F5|79501 - # we only want the last part, which is the entrez gene id - ids = parts[0].split("|"); - entrez_gene_id = ids[2] - print "%s\t" % (entrez_gene_id), - the_rest = parts[1:] - for col in the_rest: - print (col + "\t"), - print diff --git a/core/src/main/scripts/ovarian/removeNullMutations.py b/core/src/main/scripts/ovarian/removeNullMutations.py deleted file mode 100755 index b6f94ea9030..00000000000 --- a/core/src/main/scripts/ovarian/removeNullMutations.py +++ /dev/null @@ -1,12 +0,0 @@ -#! /usr/bin/env python - -import sys - -file = open (sys.argv[1]) -for line in file: - line = line.strip() - parts = line.split("\t") - if len(parts) == 3: - mutation = parts[2] - if (mutation != "0"): - print line diff --git a/core/src/main/scripts/portal-client.py b/core/src/main/scripts/portal-client.py deleted file mode 100755 index 5c5793497b8..00000000000 --- a/core/src/main/scripts/portal-client.py +++ /dev/null @@ -1,79 +0,0 @@ -#! /usr/bin/python - -# -# This scipt is a test of portal/cgds access from external client -# while spring-security is in place. -# -# The client takes two credentials: a valid webservice url, and a user credential -# for authentication -# -# example url: http://miso-dev.cbio.mskcc.org:58080/oauth-portal/webservice.do?cmd=getCancerTypes -# example credential: B039E875B4BFD4C4493B7C1323F510F6 -# - -# ------------------------------------------------------------------------------ -# imports - -import sys -import getopt -import urllib -import urllib2 - -# ------------------------------------------------------------------------------ -# globals - -ERROR_FILE = sys.stderr -OUTPUT_FILE = sys.stdout - -# ------------------------------------------------------------------------------ -# functions - -# ------------------------------------------------------------------------------ -# executes a call to the portal -def execute_portal_call(url, credential): - - try: - urlOpener = urllib2.build_opener() - urlOpener.addheaders.append(('Cookie', 'JSESSIONID=' + credential)) - response = urlOpener.open(url) - except IOError: - print >> ERROR_FILE, "error fetching url: " + url - return - - print >> OUTPUT_FILE, response.read() - -# ------------------------------------------------------------------------------ -# The big deal main. - -def main(): - - help_text = 'portal-client.py --url [properly constructed portal url] --credential [user credential]' - - # parse command line options - try: - opts, args = getopt.getopt(sys.argv[1:], "", ["url=", "credential="]) - except getopt.error, msg: - print >> ERROR_FILE, help_text - sys.exit(2) - - # process the options - url = '' - credential = '' - for o, a in opts: - if o == "--url": - url = a - elif o == "--credential": - credential = a - - if url == '' or credential == '': - print >> ERROR_FILE, help_text - sys.exit(2) - - execute_portal_call(url, credential) - - -# ------------------------------------------------------------------------------ -# lets shoot this f'in film... -# ------------------------------------------------------------------------------ -if __name__ == '__main__': - main() diff --git a/core/src/main/scripts/prepareBasicPiHelperData.sh b/core/src/main/scripts/prepareBasicPiHelperData.sh deleted file mode 100755 index 4cefe569de8..00000000000 --- a/core/src/main/scripts/prepareBasicPiHelperData.sh +++ /dev/null @@ -1,40 +0,0 @@ -#!/bin/bash - -# *** -# Downloads, unzips and puts the files under $PORTAL_DATA_HOME/reference-data/pihelper . -# -# Assumes you have unzip and wget installed in your PATH -# *** - -# Check if we have all the variables set right -echo -ne "Checking if the variables are set...\t\t" && -[ ! -z "${PORTAL_HOME} " ] && bash $PORTAL_HOME/core/src/main/scripts/env.sh && export ENV_CHECK=1 || export ENV_CHECK=0 - -if [ $ENV_CHECK -lt 1 ] -then - echo "[ failed ]" - exit -1 -else - echo "[ done ]" -fi - -# configurables -TMPDIR="$PORTAL_DATA_HOME/reference-data" -TMPDIRDB=${TMPDIR}/pihelper - -# Create the dir and cd into that -mkdir -p ${TMPDIR} && -cd ${TMPDIR} && - -echo -ne "Downloading files...\t\t" && -# Download drug data -wget --quiet "http://cbio-cancer-genomics-portal.googlecode.com/files/portal-pihelper-data-basic.zip" > /dev/null && -echo "[ done ]" && - -echo -ne "Unzipping files...\t\t" && -unzip portal-pihelper-data-basic.zip > /dev/null && -mv portal-pihelper-data-basic pihelper && -echo "[ done ]" && - -# Go back to where we were -cd - > /dev/null diff --git a/core/src/main/scripts/prepareCosmicData.sh b/core/src/main/scripts/prepareCosmicData.sh deleted file mode 100755 index 0a0056cbb02..00000000000 --- a/core/src/main/scripts/prepareCosmicData.sh +++ /dev/null @@ -1,18 +0,0 @@ -#!/bin/bash - -rm -rf $PORTAL_DATA_HOME/reference-data/cosmic_tmp -mkdir $PORTAL_DATA_HOME/reference-data/cosmic_tmp - -echo "downloading..." -wget -P $PORTAL_DATA_HOME/reference-data/cosmic_tmp/ ftp://ngs.sanger.ac.uk/production/cosmic/CosmicCodingMuts*.vcf.gz - -echo "extracting..." -gunzip $PORTAL_DATA_HOME/reference-data/cosmic_tmp/CosmicCodingMuts*.vcf.gz - -echo "copying..." -mv $PORTAL_DATA_HOME/reference-data/cosmic_tmp/CosmicCodingMuts*.vcf $PORTAL_DATA_HOME/reference-data/CosmicCodingMuts.vcf - -echo "cleaning up..." -rm -rf $PORTAL_DATA_HOME/reference-data/cosmic_tmp - -echo "done." \ No newline at end of file diff --git a/core/src/main/scripts/prepareGeneData.sh b/core/src/main/scripts/prepareGeneData.sh deleted file mode 100755 index 0cb00cdeacb..00000000000 --- a/core/src/main/scripts/prepareGeneData.sh +++ /dev/null @@ -1,29 +0,0 @@ -#!/bin/bash - -echo "downloading Homo_sapiens.gene_info.gz from ncbi..." -rm $PORTAL_DATA_HOME/reference-data/Homo_sapiens.gene_info.gz -rm $PORTAL_DATA_HOME/reference-data/Homo_sapiens.gene_info -rm $PORTAL_DATA_HOME/reference-data/human-genes.txt -wget -P $PORTAL_DATA_HOME/reference-data/ ftp://ftp.ncbi.nih.gov//gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz -echo "unzipping..." -gunzip $PORTAL_DATA_HOME/reference-data/Homo_sapiens.gene_info.gz -mv $PORTAL_DATA_HOME/reference-data/Homo_sapiens.gene_info $PORTAL_DATA_HOME/reference-data/human-genes.txt - - -# loci data for calculating gene length -rm $PORTAL_DATA_HOME/reference-data/gencode.v17.annotation.gtf.gz -rm $PORTAL_DATA_HOME/reference-data/gencode.v17.annotation.gtf -rm $PORTAL_DATA_HOME/reference-data/all_exon_loci.bed - -echo "downloading gencode.v17.annotation.gtf.gz from sanger" -wget -P $PORTAL_DATA_HOME/reference-data/ ftp://ftp.sanger.ac.uk/pub/gencode/release_17/gencode.v17.annotation.gtf.gz - -echo "unzipping..." -gunzip $PORTAL_DATA_HOME/reference-data/gencode.v17.annotation.gtf.gz - -echo "trimming..." -grep -v ^# $PORTAL_DATA_HOME/reference-data/gencode.v17.annotation.gtf | perl -ne 'chomp; @c=split(/\t/); $c[0]=~s/^chr//; $c[3]--; $c[8]=~s/.*gene_name\s\"([^"]+)\".*/$1/; print join("\t",@c[0,3,4,8,5,6])."\n" if($c[2] eq "CDS" or $c[2] eq "exon")' > $PORTAL_DATA_HOME/reference-data/all_exon_loci.bed - -rm $PORTAL_DATA_HOME/reference-data/gencode.v17.annotation.gtf - -echo "done" \ No newline at end of file diff --git a/core/src/main/scripts/preparePathwayCommonsData.sh b/core/src/main/scripts/preparePathwayCommonsData.sh deleted file mode 100755 index f49e61ac078..00000000000 --- a/core/src/main/scripts/preparePathwayCommonsData.sh +++ /dev/null @@ -1,16 +0,0 @@ -#!/bin/bash - -echo "downloading sif from pc..." -rm $PORTAL_DATA_HOME/reference-data/pcUnfilteredData.sif.gz -rm $PORTAL_DATA_HOME/reference-data/pc.sif -wget http://www.pathwaycommons.org/pc2/downloads/Pathway%20Commons.7.All.EXTENDED_BINARY_SIF.hgnc.sif.gz -O pcUnfilteredData.sif.gz -echo "unzipping..." - -gunzip pcUnfilteredData.sif.gz -#Filter out interactions to a small subset since there is about 4.5M interactions in the uncompressed file -python ./processPathwayCommonsInteractions.py ./pcUnfilteredData.sif $PORTAL_DATA_HOME/reference-data/pc.sif - -#Clean-up -rm ./pcUnfilteredData.sif - -echo "done" diff --git a/core/src/main/scripts/prepareSangerCGC.sh b/core/src/main/scripts/prepareSangerCGC.sh deleted file mode 100755 index 7ba5de5ac1c..00000000000 --- a/core/src/main/scripts/prepareSangerCGC.sh +++ /dev/null @@ -1,8 +0,0 @@ -#!/bin/bash - -rm $PORTAL_DATA_HOME/reference-data/cancer_gene_census.csv - -echo "downloading..." -wget -P $PORTAL_DATA_HOME/reference-data/ http://cancer.sanger.ac.uk/files/cosmic/current_release/cancer_gene_census.csv - -echo "done." \ No newline at end of file diff --git a/core/src/main/scripts/processPathwayCommonsInteractions.py b/core/src/main/scripts/processPathwayCommonsInteractions.py deleted file mode 100644 index 741c8949ccb..00000000000 --- a/core/src/main/scripts/processPathwayCommonsInteractions.py +++ /dev/null @@ -1,39 +0,0 @@ -import sys - -def main(argv): - inputFileName = sys.argv[1] - outputFileName = sys.argv[2] - inFile = open(inputFileName) - outFile = open(outputFileName, 'wb') - - #read out meta line - meta = inFile.readline() - outFile.write(meta) - - totalCount = 0 - filteredInteractionCount = 0 - - for line in inFile: - lineSize = len(line.split('\t')) - - # This means we are in the section where node data is included in EXTENDED_BINARY_SIF - if lineSize != 1: - sourceName = line.split('\t')[3].lower() - sourceNames = sourceName.split(';') - totalCount = totalCount + 1 - for sourceName in sourceNames: - if checkInteractionSource(sourceName): - outFile.write(line) - filteredInteractionCount = filteredInteractionCount + 1 - break - - inFile.close() - outFile.close() - print 'Wrote ' + str(filteredInteractionCount) + " interactions out of " + str(totalCount) + " interactions after filtering" - - -def checkInteractionSource(source): - return (source=='humancyc' or source=='panther' or source=='phosposite' or source=='reactome' or source=='pid') - -if __name__ == "__main__": - main(sys.argv) diff --git a/core/src/main/scripts/reload.sh b/core/src/main/scripts/reload.sh deleted file mode 100755 index 5e1cab6d49d..00000000000 --- a/core/src/main/scripts/reload.sh +++ /dev/null @@ -1,3 +0,0 @@ -ant remove -ant install - diff --git a/core/src/main/scripts/resetDb.pl b/core/src/main/scripts/resetDb.pl deleted file mode 100755 index 16c8c5f8026..00000000000 --- a/core/src/main/scripts/resetDb.pl +++ /dev/null @@ -1,6 +0,0 @@ -#!/usr/bin/env perl -require "env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.ResetDatabase @ARGV"); - -print "$cp\n"; diff --git a/core/src/main/scripts/showAllCaseLists.pl b/core/src/main/scripts/showAllCaseLists.pl deleted file mode 100755 index 8d46ab34e76..00000000000 --- a/core/src/main/scripts/showAllCaseLists.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.GetAllCaseLists @ARGV"); diff --git a/core/src/main/scripts/statDb.pl b/core/src/main/scripts/statDb.pl deleted file mode 100755 index ebb1ca45695..00000000000 --- a/core/src/main/scripts/statDb.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.StatDatabase @ARGV"); diff --git a/core/src/main/scripts/updateGenePanel.pl b/core/src/main/scripts/updateGenePanel.pl deleted file mode 100644 index 927787ebc80..00000000000 --- a/core/src/main/scripts/updateGenePanel.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/envSimple.pl"; - -exec("$JAVA_HOME/bin/java -Xmx1524M -Dspring.profiles.active=dbcp -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.UpdateGenePanel @ARGV"); diff --git a/core/src/main/scripts/updateMetaData.pl b/core/src/main/scripts/updateMetaData.pl deleted file mode 100755 index 58a768b79a8..00000000000 --- a/core/src/main/scripts/updateMetaData.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.UpdateMetaData @ARGV"); diff --git a/core/src/main/scripts/verifyGeneSets.pl b/core/src/main/scripts/verifyGeneSets.pl deleted file mode 100755 index ba555db2809..00000000000 --- a/core/src/main/scripts/verifyGeneSets.pl +++ /dev/null @@ -1,4 +0,0 @@ -#!/usr/bin/env perl -require "../scripts/env.pl"; - -system ("$JAVA_HOME/bin/java -Xmx1524M -cp $cp -DPORTAL_HOME='$portalHome' org.mskcc.cbio.portal.scripts.GeneSetsVerification @ARGV"); diff --git a/core/src/test/java/org/cbioportal/model/util/AlterationFilterTest.java b/core/src/test/java/org/cbioportal/model/util/AlterationFilterTest.java deleted file mode 100644 index fb8c58d76f3..00000000000 --- a/core/src/test/java/org/cbioportal/model/util/AlterationFilterTest.java +++ /dev/null @@ -1,116 +0,0 @@ -package org.cbioportal.model.util; - -import org.cbioportal.model.AlterationFilter; -import org.cbioportal.model.CNA; -import org.cbioportal.model.MutationEventType; -import org.junit.Assert; -import org.junit.Test; - -import java.util.HashMap; -import java.util.Map; - -public class AlterationFilterTest { - - @Test - public void setSelectAllWhenAllCnaTypesTrue() { - AlterationFilter f = new AlterationFilter(); - Map types = new HashMap(); - types.put(CNA.HOMDEL, true); - types.put(CNA.DIPLOID, true); - f.setCopyNumberAlterationEventTypes(types); - Assert.assertFalse(f.getCNAEventTypeSelect().hasValues()); - Assert.assertTrue(f.getCNAEventTypeSelect().hasAll()); - Assert.assertFalse(f.getCNAEventTypeSelect().hasNone()); - } - - @Test - public void setSelectAllWhenSomeCnaTypesTrue() { - AlterationFilter f = new AlterationFilter(); - Map types = new HashMap(); - types.put(CNA.HOMDEL, false); - types.put(CNA.DIPLOID, true); - f.setCopyNumberAlterationEventTypes(types); - Assert.assertTrue(f.getCNAEventTypeSelect().hasValues()); - Assert.assertFalse(f.getCNAEventTypeSelect().hasAll()); - Assert.assertFalse(f.getCNAEventTypeSelect().hasNone()); - } - - @Test - public void setSelectAllWhenAllCnaTypesFalse() { - AlterationFilter f = new AlterationFilter(); - Map types = new HashMap(); - types.put(CNA.HOMDEL, false); - types.put(CNA.DIPLOID, false); - f.setCopyNumberAlterationEventTypes(types); - Assert.assertFalse(f.getCNAEventTypeSelect().hasValues()); - Assert.assertFalse(f.getCNAEventTypeSelect().hasAll()); - Assert.assertTrue(f.getCNAEventTypeSelect().hasNone()); - } - - @Test(expected = IllegalArgumentException.class) - public void setSelectAllWhenCnaTypesNull() { - AlterationFilter f = new AlterationFilter(); - f.setCopyNumberAlterationEventTypes(null); - } - - @Test - public void setSelectAllWhenCnaTypesEmpty() { - AlterationFilter f = new AlterationFilter(); - f.setCopyNumberAlterationEventTypes(new HashMap<>()); - Assert.assertFalse(f.getCNAEventTypeSelect().hasValues()); - Assert.assertTrue(f.getCNAEventTypeSelect().hasAll()); - Assert.assertFalse(f.getCNAEventTypeSelect().hasNone()); - } - - @Test - public void setSelectAllWhenAllMutationTypesTrue() { - AlterationFilter f = new AlterationFilter(); - Map types = new HashMap(); - types.put(MutationEventType.feature_truncation, true); - types.put(MutationEventType.missense_mutation, true); - f.setMutationEventTypes(types); - Assert.assertFalse(f.getMutationTypeSelect().hasValues()); - Assert.assertTrue(f.getMutationTypeSelect().hasAll()); - Assert.assertFalse(f.getMutationTypeSelect().hasNone()); - } - - @Test - public void setSelectAllWhenSomeMutationTypesTrue() { - AlterationFilter f = new AlterationFilter(); - Map types = new HashMap(); - types.put(MutationEventType.feature_truncation, false); - types.put(MutationEventType.missense_mutation, true); - f.setMutationEventTypes(types); - Assert.assertTrue(f.getMutationTypeSelect().hasValues()); - Assert.assertFalse(f.getMutationTypeSelect().hasAll()); - Assert.assertFalse(f.getMutationTypeSelect().hasNone()); - } - - @Test - public void setSelectAllWhenAllMutationTypesFalse() { - AlterationFilter f = new AlterationFilter(); - Map types = new HashMap(); - types.put(MutationEventType.feature_truncation, false); - types.put(MutationEventType.missense_mutation, false); - f.setMutationEventTypes(types); - Assert.assertFalse(f.getMutationTypeSelect().hasValues()); - Assert.assertFalse(f.getMutationTypeSelect().hasAll()); - Assert.assertTrue(f.getMutationTypeSelect().hasNone()); - } - - @Test(expected = IllegalArgumentException.class) - public void setSelectAllWhenMutationTypesNull() { - AlterationFilter f = new AlterationFilter(); - f.setMutationEventTypes(null); - } - - @Test - public void setSelectAllWhenMutationTypesEmpty() { - AlterationFilter f = new AlterationFilter(); - f.setMutationEventTypes(new HashMap<>()); - Assert.assertFalse(f.getMutationTypeSelect().hasValues()); - Assert.assertTrue(f.getMutationTypeSelect().hasAll()); - Assert.assertFalse(f.getMutationTypeSelect().hasNone()); - } - -} \ No newline at end of file diff --git a/core/src/test/java/org/cbioportal/model/util/BaseAlterationFilterTest.java b/core/src/test/java/org/cbioportal/model/util/BaseAlterationFilterTest.java deleted file mode 100644 index 1f247852e08..00000000000 --- a/core/src/test/java/org/cbioportal/model/util/BaseAlterationFilterTest.java +++ /dev/null @@ -1,93 +0,0 @@ -package org.cbioportal.model.util; - -import org.cbioportal.model.BaseAlterationFilter; -import org.junit.Assert; -import org.junit.Test; - -import java.util.HashMap; -import java.util.Map; - -public class BaseAlterationFilterTest { - - @Test - public void testAlterationFilterWithEmptyConstructor() { - BaseAlterationFilter f = new BaseAlterationFilter(); - Assert.assertTrue(f.getIncludeDriver()); - Assert.assertTrue(f.getIncludeVUS()); - Assert.assertTrue(f.getIncludeUnknownOncogenicity()); - Assert.assertTrue(f.getIncludeGermline()); - Assert.assertTrue(f.getIncludeGermline()); - Assert.assertTrue(f.getIncludeUnknownStatus()); - Assert.assertTrue(f.getIncludeUnknownTier()); - Assert.assertTrue(f.getSelectedTiers().hasAll()); - } - - @Test - public void testMutationStatusFilterWithEmptyConstructor() { - BaseAlterationFilter f = new BaseAlterationFilter(); - Assert.assertTrue(f.getIncludeGermline()); - Assert.assertTrue(f.getIncludeUnknownStatus()); - Assert.assertTrue(f.getIncludeUnknownTier()); - Assert.assertTrue(f.getSelectedTiers().hasAll()); - Assert.assertTrue(f.getIncludeDriver()); - Assert.assertTrue(f.getIncludeVUS()); - Assert.assertTrue(f.getIncludeUnknownOncogenicity()); - Assert.assertTrue(f.getIncludeUnknownTier()); - Assert.assertTrue(f.getSelectedTiers().hasAll()); - } - - @Test - public void setSelectAllWhenAllTiersTrue() { - BaseAlterationFilter f = new BaseAlterationFilter(); - Map types = new HashMap(); - types.put("Class 1", true); - types.put("Class 2", true); - f.setTiersBooleanMap(types); - Assert.assertTrue(f.getSelectedTiers().hasValues()); - Assert.assertTrue(f.getSelectedTiers().hasAll()); - Assert.assertFalse(f.getSelectedTiers().hasNone()); - } - - @Test - public void setSelectAllWhenSomeTiersTrue() { - BaseAlterationFilter f = new BaseAlterationFilter(); - Map types = new HashMap(); - types.put("Class 1", false); - types.put("Class 2", true); - f.setTiersBooleanMap(types); - Assert.assertTrue(f.getSelectedTiers().hasValues()); - Assert.assertFalse(f.getSelectedTiers().hasAll()); - Assert.assertFalse(f.getSelectedTiers().hasNone()); - } - - @Test - public void setSelectAllWhenAllTiersFalse() { - BaseAlterationFilter f = new BaseAlterationFilter(); - Map types = new HashMap(); - types.put("Class 1", false); - types.put("Class 2", false); - f.setTiersBooleanMap(types); - Assert.assertFalse(f.getSelectedTiers().hasValues()); - Assert.assertFalse(f.getSelectedTiers().hasAll()); - Assert.assertTrue(f.getSelectedTiers().hasNone()); - } - - @Test - public void setSelectAllWhenTiersEmpty() { - BaseAlterationFilter f = new BaseAlterationFilter(); - f.setTiersBooleanMap(new HashMap()); - Assert.assertFalse(f.getSelectedTiers().hasValues()); - Assert.assertTrue(f.getSelectedTiers().hasAll()); - Assert.assertFalse(f.getSelectedTiers().hasNone()); - } - - @Test - public void setSelectNoneWhenNullTiers() { - BaseAlterationFilter f = new BaseAlterationFilter(); - f.setTiersBooleanMap(null); - Assert.assertFalse(f.getSelectedTiers().hasValues()); - Assert.assertFalse(f.getSelectedTiers().hasAll()); - Assert.assertTrue(f.getSelectedTiers().hasNone()); - } - -} \ No newline at end of file diff --git a/core/src/test/java/org/cbioportal/model/util/SelectTest.java b/core/src/test/java/org/cbioportal/model/util/SelectTest.java deleted file mode 100644 index 5255db7e768..00000000000 --- a/core/src/test/java/org/cbioportal/model/util/SelectTest.java +++ /dev/null @@ -1,52 +0,0 @@ -package org.cbioportal.model.util; - -import org.junit.Assert; -import org.junit.Test; - -import java.util.Arrays; -import java.util.Collections; - -public class SelectTest { - - @Test - public void all() { - Select s = Select.all(); - Assert.assertFalse(s.hasNone()); - Assert.assertFalse(s.hasValues()); - Assert.assertTrue(s.hasAll()); - } - - @Test - public void none() { - Select s = Select.none(); - Assert.assertTrue(s.hasNone()); - Assert.assertFalse(s.hasValues()); - Assert.assertFalse(s.hasAll()); - } - - @Test - public void byValues() { - Select s = Select.byValues(Arrays.asList("A", "B")); - Assert.assertFalse(s.hasNone()); - Assert.assertTrue(s.hasValues()); - Assert.assertFalse(s.hasAll()); - } - - @Test - public void byValuesEmptyList() { - Select s = Select.byValues(Collections.emptyList()); - Assert.assertTrue(s.hasNone()); - Assert.assertFalse(s.hasValues()); - Assert.assertFalse(s.hasAll()); - } - - @Test - public void hasAllExternal() { - Select s = Select.byValues(Arrays.asList("A", "B")); - s.hasAll(true); - Assert.assertFalse(s.hasNone()); - Assert.assertTrue(s.hasValues()); - Assert.assertTrue(s.hasAll()); - } - -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoCancerStudy.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoCancerStudy.java deleted file mode 100644 index 1f0ffc3ec32..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoCancerStudy.java +++ /dev/null @@ -1,184 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.junit.Test; -import org.junit.Ignore; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.CancerStudy; - -import java.io.IOException; -import java.util.ArrayList; - -import org.mskcc.cbio.portal.model.ReferenceGenome; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -/** - * JUnit Tests for DaoCancer Study. - * - * @author Arman Aksoy, Ethan Cerami, Arthur Goldberg, Ersin Ciftci. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoCancerStudy { - - /** - * Tests DaoCancer Study #1. - * @throws DaoException Database Error. - * @throws IOException IO Error. - */ - @Test - public void testDaoCancerStudy() throws DaoException, IOException { - - assertEquals("Breast Invasive Carcinoma", DaoTypeOfCancer.getTypeOfCancerById("BRCA").getName()); - - CancerStudy cancerStudy = new CancerStudy("GBM", "GBM Description", "gbm", "brca", false); - cancerStudy.setReferenceGenome("hg19"); - DaoCancerStudy.addCancerStudy(cancerStudy); - - // Removed testing that depends on internal ids - // `CANCER_STUDY_ID` auto_increment counts from 1 - // assertEquals(1, cancerStudy.getInternalId()); - - cancerStudy.setDescription("Glioblastoma"); - DaoCancerStudy.addCancerStudy(cancerStudy,true); - // Removed testing that depends on internal ids - // assertEquals(2, cancerStudy.getInternalId()); - - cancerStudy = DaoCancerStudy.getCancerStudyByStableId("gbm"); - assertEquals("gbm", cancerStudy.getCancerStudyStableId()); - assertEquals("GBM", cancerStudy.getName()); - assertEquals("Glioblastoma", cancerStudy.getDescription()); - - CancerStudy cancerStudy2 = new CancerStudy("Breast", "Breast Description", "breast", "brca", false); - cancerStudy2.setReferenceGenome("hg19"); - DaoCancerStudy.addCancerStudy(cancerStudy2); - - // Removed testing that depends on internal ids - // assertEquals(3, cancerStudy.getInternalId()); - int testInternalId = cancerStudy2.getInternalId(); - - cancerStudy2 = DaoCancerStudy.getCancerStudyByInternalId(testInternalId); - assertEquals("Breast Description", cancerStudy2.getDescription()); - assertEquals("Breast", cancerStudy2.getName()); - - ArrayList list = DaoCancerStudy.getAllCancerStudies(); - assertEquals(3, list.size()); - - assertEquals(null, DaoCancerStudy.getCancerStudyByStableId("no such study")); - assertTrue(DaoCancerStudy.doesCancerStudyExistByStableId - (cancerStudy.getCancerStudyStableId())); - assertFalse(DaoCancerStudy.doesCancerStudyExistByStableId("no such study")); - - assertTrue(DaoCancerStudy.doesCancerStudyExistByInternalId(cancerStudy.getInternalId())); - assertFalse(DaoCancerStudy.doesCancerStudyExistByInternalId(-1)); - - DaoCancerStudy.deleteCancerStudy(cancerStudy2.getInternalId()); - - list = DaoCancerStudy.getAllCancerStudies(); - assertEquals(2, list.size()); - - cancerStudy = DaoCancerStudy.getCancerStudyByStableId("gbm"); - DaoCancerStudy.deleteCancerStudy(cancerStudy.getInternalId()); - - list = DaoCancerStudy.getAllCancerStudies(); - assertEquals(1, list.size()); - } - - /** - * Tests DaoCancer Study #2. - * @throws DaoException Database Error. - * @throws IOException IO Error. - */ - @Test - public void testDaoCancerStudy2() throws DaoException, IOException { - - CancerStudy cancerStudy1 = new CancerStudy("GBM public study x", "GBM Description", - "tcga_gbm1", "brca", true); - cancerStudy1.setReferenceGenome(ReferenceGenome.HOMO_SAPIENS_DEFAULT_GENOME_NAME); - DaoCancerStudy.addCancerStudy(cancerStudy1); - - CancerStudy cancerStudy2 = new CancerStudy("GBM private study x", "GBM Description 2", - "tcga_gbm2", "brca", false); - cancerStudy2.setReferenceGenome(ReferenceGenome.HOMO_SAPIENS_DEFAULT_GENOME_NAME); - DaoCancerStudy.addCancerStudy(cancerStudy2); - - CancerStudy cancerStudy3 = new CancerStudy("Breast", "Breast Description", - "tcga_gbm3", "brca", false); - cancerStudy3.setReferenceGenome(ReferenceGenome.HOMO_SAPIENS_DEFAULT_GENOME_NAME); - DaoCancerStudy.addCancerStudy(cancerStudy3); - - ArrayList list = DaoCancerStudy.getAllCancerStudies(); - assertEquals(4, list.size()); - - int cancerStudy1Id = cancerStudy1.getInternalId(); - int cancerStudy2Id = cancerStudy2.getInternalId(); - int cancerStudy3Id = cancerStudy3.getInternalId(); - - CancerStudy readCancerStudy1 = DaoCancerStudy.getCancerStudyByInternalId(cancerStudy1Id); - // Removed testing that depends on internal ids - // assertEquals(1, cancerStudy1.getInternalId()); - assertEquals("GBM Description", readCancerStudy1.getDescription()); - assertEquals("GBM public study x", readCancerStudy1.getName()); - assertEquals(true, readCancerStudy1.isPublicStudy()); - - CancerStudy readCancerStudy2 = DaoCancerStudy.getCancerStudyByInternalId(cancerStudy2Id); - // Removed testing that depends on internal ids - // assertEquals(2, cancerStudy1.getInternalId()); - assertEquals("GBM private study x", readCancerStudy2.getName()); - assertEquals("GBM Description 2", readCancerStudy2.getDescription()); - assertEquals(false, readCancerStudy2.isPublicStudy()); - - CancerStudy readCancerStudy3 = DaoCancerStudy.getCancerStudyByInternalId(cancerStudy3Id); - // Removed testing that depends on internal ids - // assertEquals(3, cancerStudy1.getInternalId()); - assertEquals("Breast", readCancerStudy3.getName()); - assertEquals("Breast Description", readCancerStudy3.getDescription()); - assertEquals(false, readCancerStudy3.isPublicStudy()); - - assertEquals(4, DaoCancerStudy.getCount()); - DaoCancerStudy.deleteCancerStudy(readCancerStudy1.getInternalId()); - assertEquals(3, DaoCancerStudy.getCount()); - DaoCancerStudy.deleteCancerStudy(readCancerStudy2.getInternalId()); - assertEquals(2, DaoCancerStudy.getCount()); - DaoCancerStudy.deleteCancerStudy(readCancerStudy3.getInternalId()); - assertEquals(1, DaoCancerStudy.getCount()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoClinicalAttribute.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoClinicalAttribute.java deleted file mode 100644 index ec79ad91a1f..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoClinicalAttribute.java +++ /dev/null @@ -1,60 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoClinicalAttribute { - - @Test - public void testDaoClinicalAttribute() throws DaoException { - - int added = DaoClinicalAttributeMeta.addDatum(new ClinicalAttribute("attrId", "some attribute", "test attribute", "nonsense", true, "1", 1)); - assertTrue(added == 1); - - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum("attrId", 1); - assertNotNull(clinicalAttribute); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGene.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGene.java deleted file mode 100644 index 31e648270e7..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGene.java +++ /dev/null @@ -1,139 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.util.Arrays; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.MySQLbulkLoader; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.util.HashSet; - -/** - * JUnit Tests for DaoGene and DaoGeneOptimized. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoGene { - - /** - * Tests DaoGene and DaoGeneOptimized. - * @throws DaoException Database Error. - */ - @Test - public void testAddExistingGene() throws DaoException { - - // save bulkload setting before turning off - boolean isBulkLoad = MySQLbulkLoader.isBulkLoad(); - MySQLbulkLoader.bulkLoadOff(); - - // Add BRCA1 and BRCA2 Genes - CanonicalGene gene = new CanonicalGene(672, "BRCA1", - new HashSet(Arrays.asList("BRCAI|BRCC1|BROVCA1|IRIS|PNCA4|PSCP|RNF53".split("\\|")))); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - int num = daoGeneOptimized.addGene(gene); - assertEquals(5, num); - - // restore bulk setting - if (isBulkLoad) { - MySQLbulkLoader.bulkLoadOn(); - } - } - - /** - * Tests DaoGene and DaoGeneOptimized. - * @throws DaoException Database Error. - */ - @Test - public void testAddNewGene() throws DaoException { - - // save bulkload setting before turning off - boolean isBulkLoad = MySQLbulkLoader.isBulkLoad(); - MySQLbulkLoader.bulkLoadOff(); - - // Add BRCA1 and BRCA2 Genes - CanonicalGene gene = new CanonicalGene(1956, "EGFR", - new HashSet(Arrays.asList("ERBB1|ERBB|HER1".split("\\|")))); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - int num = daoGeneOptimized.addGene(gene); - assertEquals(4, num); - - // restore bulk setting - if (isBulkLoad) { - MySQLbulkLoader.bulkLoadOn(); - } - } - - /** - * Validates BRCA1. - */ - @Test - public void testBRCA1ById() { - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene(672); - assertEquals("BRCA1", gene.getHugoGeneSymbolAllCaps()); - assertEquals(672, gene.getEntrezGeneId()); - } - - /** - * Validates BRCA2. - */ - @Test - public void testBRCA2ById() { - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene(675); - assertEquals("BRCA2", gene.getHugoGeneSymbolAllCaps()); - assertEquals(675, gene.getEntrezGeneId()); - } - - /** - * Validates BRCA2. - */ - @Test - public void testBRCA2ByName() { - CanonicalGene gene = DaoGeneOptimized.getInstance().getGene("BRCA2"); - assertEquals("BRCA2", gene.getHugoGeneSymbolAllCaps()); - assertEquals(675, gene.getEntrezGeneId()); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGenePanel.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGenePanel.java deleted file mode 100644 index dab290ec2b3..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGenePanel.java +++ /dev/null @@ -1,88 +0,0 @@ -/* - * Copyright (c) 2020 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; - -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import org.junit.Test; -import org.junit.runner.RunWith; -import static org.junit.Assert.*; - -import java.util.*; - -/** - * JUnit Tests for DaoGenePanel. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoGenePanel { - - /** - * Tests DaoGenePanel.addGenePanel(). - * @throws DaoException Database Error. - */ - @Test - public void testAddGenePanel() throws DaoException { - - CanonicalGene brca1 = DaoGeneOptimized.getInstance().getGene("BRCA1"); - CanonicalGene brca2 = DaoGeneOptimized.getInstance().getGene("BRCA2"); - CanonicalGene kras = DaoGeneOptimized.getInstance().getGene("KRAS"); - HashSet canonicalGenes = new HashSet(); - canonicalGenes.add(brca1); - canonicalGenes.add(brca2); - canonicalGenes.add(kras); - - DaoGenePanel.addGenePanel("testGenePanel", "Test gene panel description", canonicalGenes); - - GenePanel genePanel = DaoGenePanel.getGenePanelByStableId("testGenePanel"); - assertTrue(genePanel != null); - assertTrue(genePanel.getStableId().equals("testGenePanel")); - assertTrue(genePanel.getDescription().equals("Test gene panel description")); - assertTrue(genePanel.getDescription().equals("Test gene panel description")); - assertEquals(genePanel.getGenes().size(), 3); - - DaoGenePanel.deleteGenePanel(genePanel); - genePanel = DaoGenePanel.getGenePanelByStableId("testGenePanel"); - assertTrue(genePanel == null); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticAlteration.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticAlteration.java deleted file mode 100644 index 5e5a10b9c22..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticAlteration.java +++ /dev/null @@ -1,130 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.util.*; - -/** - * JUnit tests for DaoGeneticAlteration class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoGeneticAlteration { - - CancerStudy study; - ArrayList internalSampleIds; - int geneticProfileId; - - @Before - public void setUp() throws DaoException { - study = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_mutations").getGeneticProfileId(); - - internalSampleIds = new ArrayList(); - Patient p = new Patient(study, "TCGA-1"); - int pId = DaoPatient.addPatient(p); - - DaoSample.reCache(); - Sample s = new Sample("XCGA-A1-A0SB-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - s = new Sample("XCGA-A1-A0SD-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - s = new Sample("XCGA-A1-A0SE-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - s = new Sample("XCGA-A1-A0SF-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - } - - @Test - public void testDaoGeneticAlterationBulkOn() throws DaoException { - - // test with MySQLbulkLoader.isBulkLoad() - runTheTest(); - } - - @Test - public void testDaoGeneticAlterationBulkOff() throws DaoException { - - // test without MySQLbulkLoader.isBulkLoad() - MySQLbulkLoader.bulkLoadOff(); - runTheTest(); - MySQLbulkLoader.bulkLoadOn(); - } - - private void runTheTest() throws DaoException{ - - // Add the Sample List - int numRows = DaoGeneticProfileSamples.addGeneticProfileSamples(geneticProfileId, internalSampleIds); - assertEquals (1, numRows); - - // Add Some Data - String data = "200:400:600:800"; - String values[] = data.split(":"); - DaoGeneticAlteration dao = DaoGeneticAlteration.getInstance(); - numRows = dao.addGeneticAlterations(geneticProfileId, 672, values); - assertEquals (1, numRows); - - // if bulkLoading, execute LOAD FILE - if( MySQLbulkLoader.isBulkLoad()){ - MySQLbulkLoader.flushAll(); - } - - HashMap valueMap = dao.getGeneticAlterationMap(geneticProfileId, 672); - assertEquals ("200", valueMap.get(internalSampleIds.get(0))); - assertEquals ("400", valueMap.get(internalSampleIds.get(1))); - assertEquals ("600", valueMap.get(internalSampleIds.get(2))); - assertEquals ("800", valueMap.get(internalSampleIds.get(3))); - - // Test the getGenesInProfile method - Set geneSet = dao.getGenesInProfile(geneticProfileId); - ArrayList geneList = new ArrayList (geneSet); - assertEquals (1, geneList.size()); - CanonicalGene gene = geneList.get(0); - assertEquals ("BRCA1", gene.getHugoGeneSymbolAllCaps()); - assertEquals (672, gene.getEntrezGeneId()); - - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticProfile.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticProfile.java deleted file mode 100644 index 8fe0569b8f9..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticProfile.java +++ /dev/null @@ -1,158 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.dao; - -import java.util.ArrayList; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; -import static org.junit.Assert.*; - -/** - * JUnit tests for DaoGeneticProfile class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoGeneticProfile { - - int studyId; - - @Before - public void setUp() throws DaoException - { - studyId = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub").getInternalId(); - DaoGeneticProfile.reCache(); - } - - @Test - public void testDaoGetAllGeneticProfiles() throws DaoException { - - ArrayList list = DaoGeneticProfile.getAllGeneticProfiles(studyId); - assertEquals(7, list.size()); - } - - @Test - public void testDaoCheckGeneticProfiles() throws DaoException { - - ArrayList list = DaoGeneticProfile.getAllGeneticProfiles(studyId); - GeneticProfile geneticProfile = list.get(0); - assertEquals(studyId, geneticProfile.getCancerStudyId()); - assertEquals("Putative copy-number alterations from GISTIC", geneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.COPY_NUMBER_ALTERATION, geneticProfile.getGeneticAlterationType()); - assertEquals("Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.", - geneticProfile.getProfileDescription()); - - geneticProfile = list.get(1); - assertEquals(studyId, geneticProfile.getCancerStudyId()); - assertEquals("mRNA expression (microarray)", geneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.MRNA_EXPRESSION, geneticProfile.getGeneticAlterationType()); - assertEquals(false, geneticProfile.showProfileInAnalysisTab()); - } - - @Test - public void testDaoCreateGeneticProfile() throws DaoException { - - GeneticProfile geneticProfile = new GeneticProfile(); - geneticProfile.setCancerStudyId(studyId); - geneticProfile.setProfileName("test profile"); - geneticProfile.setStableId("test"); - geneticProfile.setGeneticAlterationType(GeneticAlterationType.STRUCTURAL_VARIANT); - geneticProfile.setDatatype("test"); - DaoGeneticProfile.addGeneticProfile(geneticProfile); - - GeneticProfile readGeneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("test"); - assertEquals(studyId, readGeneticProfile.getCancerStudyId()); - assertEquals("test", readGeneticProfile.getStableId()); - assertEquals("test profile", readGeneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.STRUCTURAL_VARIANT, readGeneticProfile.getGeneticAlterationType()); - } - - @Test - public void testDaoGetGeneticProfileByStableId() throws DaoException { - - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_gistic"); - assertEquals(studyId, geneticProfile.getCancerStudyId()); - assertEquals("Putative copy-number alterations from GISTIC", geneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.COPY_NUMBER_ALTERATION, geneticProfile.getGeneticAlterationType()); - } - - @Test - public void testDaoGetGeneticProfileByInternalId() throws DaoException { - - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(2); - assertEquals(studyId, geneticProfile.getCancerStudyId()); - assertEquals("Putative copy-number alterations from GISTIC", geneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.COPY_NUMBER_ALTERATION, geneticProfile.getGeneticAlterationType()); - } - - @Test - public void testDaoDeleteGeneticProfile() throws DaoException { - - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileById(2); - - assertEquals(7, DaoGeneticProfile.getCount()); - DaoGeneticProfile.deleteGeneticProfile(geneticProfile); - assertEquals(6, DaoGeneticProfile.getCount()); - - ArrayList list = DaoGeneticProfile.getAllGeneticProfiles(studyId); - assertEquals(6, list.size()); - geneticProfile = list.get(0); - assertEquals(studyId, geneticProfile.getCancerStudyId()); - assertEquals("mRNA expression (microarray)", geneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.MRNA_EXPRESSION, geneticProfile.getGeneticAlterationType()); - } - - @Test - public void testDaoUpdateGeneticProfile() throws DaoException { - - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_gistic"); - - assertTrue(DaoGeneticProfile.updateNameAndDescription( - geneticProfile.getGeneticProfileId(), "Updated Name", - "Updated Description")); - ArrayList list = DaoGeneticProfile.getAllGeneticProfiles(studyId); - assertEquals(7, list.size()); - geneticProfile = list.get(0); - assertEquals(studyId, geneticProfile.getCancerStudyId()); - assertEquals("Updated Name", geneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.COPY_NUMBER_ALTERATION, geneticProfile.getGeneticAlterationType()); - assertEquals("Updated Description", geneticProfile.getProfileDescription()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticProfileSamples.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticProfileSamples.java deleted file mode 100644 index b9bd8e5a1d1..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGeneticProfileSamples.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.*; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -import static org.junit.Assert.*; - -import java.util.ArrayList; - -/** - * JUnit Tests for the Dao Genetic Profile Cases Class. - * - * @author Ethan Cerami. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -public class TestDaoGeneticProfileSamples { - - CancerStudy study; - ArrayList internalSampleIds; - int geneticProfileId; - - @Before - public void setUp() throws DaoException { - study = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_mutations").getGeneticProfileId(); - - internalSampleIds = new ArrayList(); - Patient p = new Patient(study, "TCGA-1"); - int pId = DaoPatient.addPatient(p); - - DaoSample.reCache(); - Sample s = new Sample("XCGA-A1-A0SB-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - s = new Sample("XCGA-A1-A0SD-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - s = new Sample("XCGA-A1-A0SE-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - s = new Sample("XCGA-A1-A0SF-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - } - - /** - * Tests the Dao Genetic Profile Samples Class. - * @throws DaoException Database Exception. - */ - @Test - public void testDaoGeneticProfileSamples() throws DaoException { - - ArrayList orderedSampleList = new ArrayList(); - int numRows = DaoGeneticProfileSamples.addGeneticProfileSamples(geneticProfileId, internalSampleIds); - - assertEquals (1, numRows); - - orderedSampleList = DaoGeneticProfileSamples.getOrderedSampleList(geneticProfileId); - assertEquals (4, orderedSampleList.size()); - - // Test the Delete method - DaoGeneticProfileSamples.deleteAllSamplesInGeneticProfile(geneticProfileId); - orderedSampleList = DaoGeneticProfileSamples.getOrderedSampleList(geneticProfileId); - assertEquals (0, orderedSampleList.size()); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGistic.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGistic.java deleted file mode 100644 index 5de4c153b30..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoGistic.java +++ /dev/null @@ -1,99 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.util.Arrays; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGistic; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Gistic; -import org.mskcc.cbio.portal.validate.validationException; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.sql.SQLException; -import java.util.ArrayList; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoGistic { - - @Test - public void testDaoGistic() throws SQLException, DaoException, validationException { - - // initialize dummy parameters - CanonicalGene brca1 = DaoGeneOptimized.getInstance().getGene("BRCA1"); - CanonicalGene brca2 = DaoGeneOptimized.getInstance().getGene("BRCA2"); - CanonicalGene kras = DaoGeneOptimized.getInstance().getGene("KRAS"); - - ArrayList geneList = - new ArrayList(Arrays.asList(brca1, brca2, kras)); - - Gistic gisticIn1; - Gistic gisticIn2; - gisticIn1 = new Gistic(1, 1, "1q11.1", 1, 2, 0.01f, geneList, Gistic.AMPLIFIED); - gisticIn2 = new Gistic(1, 2, "2q22.2", 1, 2, 0.01f, geneList, Gistic.AMPLIFIED); - - // end initialize - - assertEquals(Gistic.NO_SUCH_GISTIC, gisticIn1.getInternalId()); - // -- put stuff in -- - DaoGistic.addGistic(gisticIn1); - // InternalId is auto-incremented by the db, starting at 1 - //assertEquals(1, gisticIn1.getInternalId()); - DaoGistic.addGistic(gisticIn2); - //assertEquals(2, gisticIn2.getInternalId()); - DaoGistic.deleteGistic(2); - //assertEquals(1, gisticIn1.getInternalId()); - DaoGistic.addGistic(gisticIn2); - - // -- get stuff back -- - -// DaoGistic.getGisticByROI("1q11", 1,2); Perhaps this is a new project of some sort? -// ROIs across various cancers. - - ArrayList gisticOut = DaoGistic.getAllGisticByCancerStudyId(1); - assertTrue(gisticOut != null); - //assertEquals(2, gisticOut.size()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoMutSig.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoMutSig.java deleted file mode 100644 index 1794d2b4dad..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoMutSig.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.MutSig; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.IOException; - -/** - * @author Lennart Bastian - */ - - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoMutSig { - - /** - * Tests DaoGene and DaoGeneOptimized. - * - * @throws org.mskcc.cbio.portal.dao.DaoException - * Database Error. - */ - - @Test - public void testDaoMutSig() throws DaoException, IOException { - - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - - // Add Gene TP53 to both gene table and mut_sig table - CanonicalGene gene1 = new CanonicalGene(10298321, "TP53"); - daoGeneOptimized.addGene(gene1); - MutSig tp53 = new MutSig(1, gene1, 1, 145177, 48, 1E-11f, 1E-8f); - - // Add Gene PTEN to both gene table and mut_sig table - CanonicalGene gene2 = new CanonicalGene(10298321, "PTEN"); - daoGeneOptimized.addGene(gene2); - MutSig pten = new MutSig(1, gene2, 2, 156252, 34, 1E-11f, 1E-8f); - DaoMutSig.addMutSig(pten); - - //get tp53 from mutsig table using hugoGeneSymbol - MutSig mutSig = DaoMutSig.getMutSig("TP53", 1); - CanonicalGene testGene = mutSig.getCanonicalGene(); - assertTrue("TP53".equals(testGene.getHugoGeneSymbolAllCaps())); - assertEquals(1, mutSig.getCancerType()); - - //get pten from mutsig table using entrez ID - long foo = 10298321; - MutSig mutSig2 = DaoMutSig.getMutSig(foo, 1); - CanonicalGene testGene2 = mutSig2.getCanonicalGene(); - assertEquals(10298321, testGene2.getEntrezGeneId()); - assertEquals(1, mutSig2.getCancerType()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoMutation.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoMutation.java deleted file mode 100644 index d55b2085cd1..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoMutation.java +++ /dev/null @@ -1,258 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.io.IOException; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.util.*; - -import com.fasterxml.jackson.databind.ObjectMapper; - -import org.junit.Assert; - -/** - * JUnit tests for DaoMutation class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoMutation { - - int geneticProfileId; - int sampleId; - CanonicalGene gene; - - @Before - public void setUp() throws DaoException { - int studyId = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub").getInternalId(); - ArrayList list = DaoGeneticProfile.getAllGeneticProfiles(studyId); - geneticProfileId = list.get(0).getGeneticProfileId(); - - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SB-01").getInternalId(); - - gene = new CanonicalGene(321, "BLAH"); - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - daoGeneOptimized.addGene(gene); - } - - @Test - public void testDaoMutation() throws DaoException { - MySQLbulkLoader.bulkLoadOn(); - runTheTest(); - } - - private void runTheTest() throws DaoException{ - // Add a fake gene - - ExtendedMutation mutation = new ExtendedMutation(); - - mutation.setMutationEventId(1); - mutation.setKeyword("key"); - mutation.setGeneticProfileId(geneticProfileId); - mutation.setSampleId(sampleId); - mutation.setGene(gene); - mutation.setValidationStatus("validated"); - mutation.setMutationStatus("somatic"); - mutation.setMutationType("missense"); - mutation.setChr("chr1"); - mutation.setStartPosition(10000); - mutation.setEndPosition(20000); - mutation.setSequencingCenter("Broad"); - mutation.setSequencer("SOLiD"); - mutation.setProteinChange("BRCA1_123"); - mutation.setNcbiBuild("37/hg19"); - mutation.setStrand("+"); - mutation.setVariantType("Consolidated"); - mutation.setReferenceAllele("ATGC"); - mutation.setTumorSeqAllele1("ATGC"); - mutation.setTumorSeqAllele2("ATGC"); - mutation.setTumorSeqAllele("ATGC"); - mutation.setDbSnpRs("rs12345"); - mutation.setDbSnpValStatus("by2Hit2Allele;byCluster"); - mutation.setMatchedNormSampleBarcode("TCGA-02-0021-10A-01D-0002-04"); - mutation.setMatchNormSeqAllele1("TGCA"); - mutation.setMatchNormSeqAllele2("TGCA"); - mutation.setTumorValidationAllele1("AT-GC"); - mutation.setTumorValidationAllele2("AT-GC"); - mutation.setMatchNormValidationAllele1("C"); - mutation.setMatchNormValidationAllele2("G"); - mutation.setVerificationStatus("Verified"); - mutation.setSequencingPhase("Phase_6"); - mutation.setSequenceSource("PCR;Capture;WGS"); - mutation.setValidationMethod("Sanger_PCR_WGA;Sanger_PCR_gDNA"); - mutation.setScore("NA"); - mutation.setBamFile("NA"); - mutation.setTumorAltCount(6); - mutation.setTumorRefCount(16); - mutation.setNormalAltCount(8); - mutation.setNormalRefCount(18); - mutation.setCodonChange("c.(133-135)TCT>TTT"); - mutation.setRefseqMrnaId("NM_001904"); - mutation.setUniprotAccession("P35222"); - mutation.setProteinPosStart(666); - mutation.setProteinPosEnd(678); - mutation.setCanonicalTranscript(true); - mutation.setAnnotationJson(makeMockAnnotationJsonString()); - - DaoMutation.addMutation(mutation,true); - - // if bulkLoading, execute LOAD FILE - if( MySQLbulkLoader.isBulkLoad()){ - MySQLbulkLoader.flushAll(); - } - ArrayList mutationList = DaoMutation.getMutations(geneticProfileId, 1, 321); - validateMutation(mutationList.get(0)); - - // Test the getGenesInProfile method - Set geneSet = DaoMutation.getGenesInProfile(geneticProfileId); - assertEquals(1, geneSet.size()); - - ArrayList geneList = new ArrayList(geneSet); - CanonicalGene gene = geneList.get(0); - assertEquals(321, gene.getEntrezGeneId()); - assertEquals("BLAH", gene.getHugoGeneSymbolAllCaps()); - } - - private void validateMutation(ExtendedMutation mutation) { - assertEquals(geneticProfileId, mutation.getGeneticProfileId()); - assertEquals(sampleId, mutation.getSampleId()); - assertEquals(321, mutation.getEntrezGeneId()); - assertEquals("validated", mutation.getValidationStatus()); - assertEquals("somatic", mutation.getMutationStatus()); - assertEquals("missense", mutation.getMutationType()); - assertEquals("chr1", mutation.getChr()); - assertEquals(10000, mutation.getStartPosition()); - assertEquals(20000, mutation.getEndPosition()); - assertEquals("Broad", mutation.getSequencingCenter()); - assertEquals("SOLiD", mutation.getSequencer()); - assertEquals("BRCA1_123", mutation.getProteinChange()); - assertEquals("37/hg19", mutation.getNcbiBuild()); - assertEquals("+", mutation.getStrand()); - assertEquals("Consolidated", mutation.getVariantType()); - assertEquals("ATGC", mutation.getReferenceAllele()); - assertEquals("ATGC", mutation.getTumorSeqAllele1()); - assertEquals("ATGC", mutation.getTumorSeqAllele2()); - assertEquals("rs12345", mutation.getDbSnpRs()); - assertEquals("by2Hit2Allele;byCluster", mutation.getDbSnpValStatus()); - assertEquals("TCGA-02-0021-10A-01D-0002-04", mutation.getMatchedNormSampleBarcode()); - assertEquals("TGCA", mutation.getMatchNormSeqAllele1()); - assertEquals("TGCA", mutation.getMatchNormSeqAllele2()); - assertEquals("AT-GC", mutation.getTumorValidationAllele1()); - assertEquals("AT-GC", mutation.getTumorValidationAllele2()); - assertEquals("C", mutation.getMatchNormValidationAllele1()); - assertEquals("G", mutation.getMatchNormValidationAllele2()); - assertEquals("Verified", mutation.getVerificationStatus()); - assertEquals("Phase_6", mutation.getSequencingPhase()); - assertEquals("PCR;Capture;WGS", mutation.getSequenceSource()); - assertEquals("Sanger_PCR_WGA;Sanger_PCR_gDNA", mutation.getValidationMethod()); - assertEquals("NA", mutation.getScore()); - assertEquals("NA", mutation.getBamFile()); - assertEquals(Integer.valueOf(6), mutation.getTumorAltCount()); - assertEquals(Integer.valueOf(16), mutation.getTumorRefCount()); - assertEquals(Integer.valueOf(8), mutation.getNormalAltCount()); - assertEquals(Integer.valueOf(18), mutation.getNormalRefCount()); - assertEquals("c.(133-135)TCT>TTT", mutation.getCodonChange()); - assertEquals("NM_001904", mutation.getRefseqMrnaId()); - assertEquals("P35222", mutation.getUniprotAccession()); - assertEquals(666, mutation.getProteinPosStart()); - assertEquals(678, mutation.getProteinPosEnd()); - assertEquals(true, mutation.isCanonicalTranscript()); - validateMockAnnotationJson(mutation); - - } - - private void validateMockAnnotationJson(ExtendedMutation mutation) { - Map> annotationJsonMap = new HashMap<>(); - ObjectMapper mapper = new ObjectMapper(); - try { - annotationJsonMap = mapper.readValue(mutation.getAnnotationJson(), annotationJsonMap.getClass()); - } catch (IOException ex) { - throw new RuntimeException(ex); - } - Map> expectedAnnotationJsonMap = makeMockExpectedAnnotationJsonMap(); - - // confirm expected sizes - Assert.assertTrue(annotationJsonMap.containsKey("namespace1")); - Assert.assertEquals(expectedAnnotationJsonMap.get("namespace1").size(), annotationJsonMap.get("namespace1").size()); - Assert.assertEquals(2, annotationJsonMap.get("namespace1").size()); - Assert.assertTrue(annotationJsonMap.containsKey("namespace2")); - Assert.assertEquals(1, annotationJsonMap.get("namespace2").size()); - Assert.assertEquals(expectedAnnotationJsonMap.get("namespace2").size(), annotationJsonMap.get("namespace2").size()); - - // compare namespace 1 annotation map values - Map namespace1Map = annotationJsonMap.get("namespace1"); - Map expectedNamespace1Map = expectedAnnotationJsonMap.get("namespace1"); - Assert.assertEquals(expectedNamespace1Map.get("header1"), namespace1Map.get("header1")); - Assert.assertEquals(expectedNamespace1Map.get("header2"), namespace1Map.get("header2")); - - // compare namespace 2 annotation map values - Map namespace2Map = annotationJsonMap.get("namespace2"); - Map expectedNamespace2Map = expectedAnnotationJsonMap.get("namespace2"); - Assert.assertEquals(expectedNamespace2Map.get("header1"), namespace2Map.get("header1")); - } - - private String makeMockAnnotationJsonString() { - // return annotation json map as a string - ObjectMapper mapper = new ObjectMapper(); - try { - return mapper.writeValueAsString(makeMockExpectedAnnotationJsonMap()); - } catch (IOException ex) { - throw new RuntimeException(ex); - } - } - - private Map> makeMockExpectedAnnotationJsonMap() { - // construct map of namespaces to key-value pairs - Map> annotationJsonMap = new HashMap<>(); - Map namespace1Annotations = new HashMap<>(); - namespace1Annotations.put("header1", "ns1_header1_value"); - namespace1Annotations.put("header2", "ns1_header2_value"); - annotationJsonMap.put("namespace1", namespace1Annotations); - - Map namespace2Annotations = new HashMap<>(); - namespace2Annotations.put("header1", "ns2_header1_value"); - annotationJsonMap.put("namespace2", namespace2Annotations); - return annotationJsonMap; - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoSampleList.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoSampleList.java deleted file mode 100644 index ca359e388e9..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoSampleList.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import java.util.ArrayList; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -/** - * JUnit test for DaoCase List. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoSampleList { - - CancerStudy study; - - @Before - public void setUp() throws DaoException { - study = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - Patient p = new Patient(study, "TCGA-1"); - int pId = DaoPatient.addPatient(p); - DaoSample.addSample(new Sample("TCGA-1-S1", pId, "brca")); - - p = new Patient(study, "TCGA-2"); - pId = DaoPatient.addPatient(p); - DaoSample.addSample(new Sample("TCGA-2-S1", pId, "brca")); - } - - @Test - public void testDaoSampleList() throws DaoException { - DaoSampleList daoSampleList = new DaoSampleList(); - SampleList sampleList = new SampleList(); - sampleList.setName("Name0"); - sampleList.setDescription("Description0"); - sampleList.setStableId("stable_0"); - sampleList.setCancerStudyId(study.getInternalId()); - sampleList.setSampleListCategory(SampleListCategory.ALL_CASES_WITH_CNA_DATA); - ArrayList samples = new ArrayList(); - samples.add("TCGA-1-S1"); - samples.add("TCGA-2-S1"); - sampleList.setSampleList(samples); - daoSampleList.addSampleList(sampleList); - - // Only patients with samples are returned. No samples, no returny in the listy. - SampleList sampleListFromDb = daoSampleList.getSampleListByStableId("stable_0"); - assertEquals("Name0", sampleListFromDb.getName()); - assertEquals("Description0", sampleListFromDb.getDescription()); - assertEquals(SampleListCategory.ALL_CASES_WITH_CNA_DATA, sampleListFromDb.getSampleListCategory()); - assertEquals("stable_0", sampleListFromDb.getStableId()); - assertEquals(2, sampleListFromDb.getSampleList().size()); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoSampleProfile.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoSampleProfile.java deleted file mode 100644 index 0c95252bed5..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoSampleProfile.java +++ /dev/null @@ -1,114 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import org.mskcc.cbio.portal.model.*; - -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import org.junit.Test; -import org.junit.Before; -import org.junit.runner.RunWith; -import static org.junit.Assert.*; - -import java.util.*; - -/** - * JUnit test for DaoSample class - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoSampleProfile { - - CancerStudy study; - GenePanel genePanel; - ArrayList internalSampleIds; - int geneticProfileId; - - @Before - public void setUp() throws DaoException { - CanonicalGene brca1 = DaoGeneOptimized.getInstance().getGene("BRCA1"); - CanonicalGene brca2 = DaoGeneOptimized.getInstance().getGene("BRCA2"); - CanonicalGene kras = DaoGeneOptimized.getInstance().getGene("KRAS"); - HashSet canonicalGenes = new HashSet(); - canonicalGenes.add(brca1); - canonicalGenes.add(brca2); - canonicalGenes.add(kras); - DaoGenePanel.addGenePanel("testGenePanel", "Test gene panel description", canonicalGenes); - genePanel = DaoGenePanel.getGenePanelByStableId("testGenePanel"); - - study = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_mutations").getGeneticProfileId(); - - internalSampleIds = new ArrayList(); - Patient p = new Patient(study, "TCGA-12345"); - int pId = DaoPatient.addPatient(p); - - DaoSample.reCache(); - Sample s = new Sample("TCGA-12345-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - s = new Sample("TCGA-123456-01", pId, "brca"); - internalSampleIds.add(DaoSample.addSample(s)); - } - - @Test - public void testDaoSampleProfile() throws DaoException { - - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(study.getInternalId(), "TCGA-12345"); - Sample sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-12345-01"); - - int num = DaoSampleProfile.addSampleProfile(sample.getInternalId(), geneticProfileId, null); - assertEquals(1, num); - - boolean exists = DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId); - assertTrue(exists); - - assertEquals(geneticProfileId, DaoSampleProfile.getProfileIdForSample(sample.getInternalId())); - - sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-123456-01"); - num = DaoSampleProfile.addSampleProfile(sample.getInternalId(), geneticProfileId, genePanel.getInternalId()); - assertEquals(1, num); - - boolean existsByPanelId = DaoSampleProfile.sampleProfileMappingExistsByPanel(genePanel.getInternalId()); - assertTrue(existsByPanelId); - - ArrayList sampleIds = DaoSampleProfile.getAllSampleIdsInProfile(geneticProfileId); - assertEquals(9, sampleIds.size()); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoUser.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoUser.java deleted file mode 100644 index ba9c4a9af35..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoUser.java +++ /dev/null @@ -1,106 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -import static org.junit.Assert.*; - -import java.util.ArrayList; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoUser; -import org.mskcc.cbio.portal.model.User; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; -import static org.hamcrest.CoreMatchers.*; - -/** - * JUnit test for DaoUser class. - */ - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoUser { - - @Test - public void testDaoSeededUsers() throws Exception { - ArrayList allUsers = DaoUser.getAllUsers(); - assertEquals(3, allUsers.size()); - } - - @Test - public void testDaoFindUser() throws Exception { - - User user = DaoUser.getUserByEmail("Lonnie@openid.org"); - assertThat(user.getEmail(), is("Lonnie@openid.org")); - } - - - @Test - public void testDaoAddUser() throws Exception { - - User user = new User("joe@mail.com", "Joe Smith", false); - DaoUser.addUser(user); - - assertEquals(null, DaoUser.getUserByEmail("foo")); - assertEquals(user, DaoUser.getUserByEmail("joe@mail.com")); - assertFalse(user.isEnabled()); - - ArrayList allUsers = DaoUser.getAllUsers(); - assertEquals(4, allUsers.size()); - - User foundUser = DaoUser.getUserByEmail("joe@mail.com"); - assertThat(foundUser, is(notNullValue())); - assertThat(user.getEmail(), is("joe@mail.com")); - } - - @Test - public void testDaoRemoveUser() throws Exception { - - DaoUser.deleteUser("Lonnie@openid.org"); - - ArrayList allUsers = DaoUser.getAllUsers(); - assertEquals(2, allUsers.size()); - - for(User user : allUsers) { - assertThat(user.getEmail(), is(not("Lonnie@openid.org"))); - } - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoUserAuthorities.java b/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoUserAuthorities.java deleted file mode 100644 index 393450bb1ae..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/dao/TestDaoUserAuthorities.java +++ /dev/null @@ -1,89 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.dao; - -// imports -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertTrue; -import static org.junit.Assert.fail; - -import java.util.Arrays; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.User; -import org.mskcc.cbio.portal.model.UserAuthorities; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * JUnit test for DaoUserAuthorities class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestDaoUserAuthorities { - - @Test - public void testDaoUserAuthorities() throws Exception { - - User userJoe = new User("joe@goggle.com", "Joe User", true); - User userJane = new User("jane@hotmail.com", "Jane User", true); - UserAuthorities authorities = DaoUserAuthorities.getUserAuthorities(userJoe); - assertEquals(authorities.getAuthorities().size(), 0); - - authorities = new UserAuthorities(userJane.getEmail(), Arrays.asList("ROLE_USER")); - DaoUserAuthorities.addUserAuthorities(authorities); - - authorities = new UserAuthorities(userJoe.getEmail(), Arrays.asList("ROLE_MANAGER", "ROLE_USER")); - DaoUserAuthorities.addUserAuthorities(authorities); - - assertTrue(DaoUserAuthorities.getUserAuthorities(userJoe).getAuthorities().contains("ROLE_MANAGER")); - assertFalse(DaoUserAuthorities.getUserAuthorities(userJane).getAuthorities().contains("ROLE_MANAGER")); - - try { - DaoUserAuthorities.removeUserAuthorities(userJane); - assertFalse(DaoUserAuthorities.getUserAuthorities(userJane).getAuthorities().contains("ROLE_USER")); - } catch (Exception e) { - fail("Should not throw Exception " + e.getMessage()); - } - - assertTrue(DaoUserAuthorities.getUserAuthorities(userJoe) != null); - DaoUserAuthorities.deleteAllRecords(); - assertEquals(DaoUserAuthorities.getUserAuthorities(userJoe).getAuthorities().size(), 0); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/model/TestAnnotatedSampleSets.java b/core/src/test/java/org/mskcc/cbio/portal/model/TestAnnotatedSampleSets.java deleted file mode 100644 index a0827bd2d9d..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/model/TestAnnotatedSampleSets.java +++ /dev/null @@ -1,98 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import static org.junit.Assert.assertEquals; - -import java.util.ArrayList; -import java.util.List; - -import org.junit.Before; -import org.junit.Test; - -/** - * JUnit Tests for the Annotated Sample Sets. - * - * @author Ethan Cerami. - */ -public class TestAnnotatedSampleSets { - - List sampleSetList; - - @Before - public void setUp() { - sampleSetList = new ArrayList(); - SampleList sampleList0 = new SampleList("all", 1, 2, "all gbm", SampleListCategory.OTHER); - SampleList sampleList1 = new SampleList("all", 1, 2, "all tumors", SampleListCategory.OTHER); - SampleList sampleList2 = new SampleList("all", 1, 2, "expression subset 1", SampleListCategory.OTHER); - sampleSetList.add(sampleList0); - sampleSetList.add(sampleList1); - sampleSetList.add(sampleList2); - } - - @Test - public void test1() { - AnnotatedSampleSets annotatedSampleSets = new AnnotatedSampleSets(sampleSetList); - SampleList defaultSampleSet = annotatedSampleSets.getDefaultSampleList(); - assertEquals("all tumors", defaultSampleSet.getName()); - } - @Test - public void test2() { - SampleList sampleList3 = new SampleList("all", 1, 2, "all complete tumors", SampleListCategory.OTHER); - sampleSetList.add(sampleList3); - AnnotatedSampleSets annotatedSampleSets = new AnnotatedSampleSets(sampleSetList); - SampleList defaultSampleSet = annotatedSampleSets.getDefaultSampleList(); - assertEquals("all complete tumors", defaultSampleSet.getName()); - } - @Test - public void test3() { - sampleSetList = new ArrayList(); - AnnotatedSampleSets annotatedSampleSets = new AnnotatedSampleSets(sampleSetList); - SampleList defaultSampleSet = annotatedSampleSets.getDefaultSampleList(); - assertEquals(null, defaultSampleSet); - } - @Test - public void test4() { - sampleSetList = new ArrayList(); - SampleList sampleList0 = new SampleList("exp1", 1, 2, "exp1", SampleListCategory.OTHER); - SampleList sampleList1 = new SampleList("exp2", 1, 2, "exp2", SampleListCategory.OTHER); - SampleList sampleList2 = new SampleList("exp3", 1, 2, "exp3", SampleListCategory.OTHER); - sampleSetList.add(sampleList0); - sampleSetList.add(sampleList1); - sampleSetList.add(sampleList2); - AnnotatedSampleSets annotatedSampleSets = new AnnotatedSampleSets(sampleSetList); - SampleList defaultSampleSet = annotatedSampleSets.getDefaultSampleList(); - assertEquals("exp1", defaultSampleSet.getName()); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/model/TestCategorizedGeneticProfileSet.java b/core/src/test/java/org/mskcc/cbio/portal/model/TestCategorizedGeneticProfileSet.java deleted file mode 100644 index 637b2956a41..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/model/TestCategorizedGeneticProfileSet.java +++ /dev/null @@ -1,137 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import java.util.ArrayList; -import org.junit.Test; -import static org.junit.Assert.assertEquals; - -/** - * JUnit Tests for the Categorized GeneticProfileSet. - * - * @author Ethan Cerami. - */ -public class TestCategorizedGeneticProfileSet { - - @Test - public void testEmptyList() { - ArrayList profileList = new ArrayList(); - CategorizedGeneticProfileSet categorizedSet = new CategorizedGeneticProfileSet(profileList); - assertEquals (0, categorizedSet.getNumDefaultMutationAndCopyNumberProfiles()); - assertEquals (null, categorizedSet.getDefaultCnaProfile()); - assertEquals (null, categorizedSet.getDefaultMutationProfile()); - } - - @Test - public void testMRNADataOnly() { - ArrayList profileList = new ArrayList(); - addMRNAProfile(profileList); - CategorizedGeneticProfileSet categorizedSet = new CategorizedGeneticProfileSet(profileList); - assertEquals (0, categorizedSet.getNumDefaultMutationAndCopyNumberProfiles()); - assertEquals (null, categorizedSet.getDefaultCnaProfile()); - assertEquals (null, categorizedSet.getDefaultMutationProfile()); - } - - @Test - public void testGisticProfile() { - ArrayList profileList = buildProfileList1(); - CategorizedGeneticProfileSet categorizedSet = new CategorizedGeneticProfileSet(profileList); - assertEquals (2, categorizedSet.getNumDefaultMutationAndCopyNumberProfiles()); - GeneticProfile defaultCnaProfile = categorizedSet.getDefaultCnaProfile(); - assertEquals ("gbm_gistic", defaultCnaProfile.getStableId()); - GeneticProfile defaultMutProfile = categorizedSet.getDefaultMutationProfile(); - assertEquals ("gbm_mut", defaultMutProfile.getStableId()); - } - - @Test - public void testRaeProfile() { - ArrayList profileList = buildProfileList2(); - CategorizedGeneticProfileSet categorizedSet = new CategorizedGeneticProfileSet(profileList); - assertEquals (2, categorizedSet.getNumDefaultMutationAndCopyNumberProfiles()); - GeneticProfile defaultCnaProfile = categorizedSet.getDefaultCnaProfile(); - assertEquals ("gbm_rae", defaultCnaProfile.getStableId()); - GeneticProfile defaultMutProfile = categorizedSet.getDefaultMutationProfile(); - assertEquals ("gbm_mut", defaultMutProfile.getStableId()); - } - - private ArrayList buildProfileList1() { - ArrayList profileList = new ArrayList(); - addCnaPathwayProfile(profileList); - addGisticProfile(profileList); - addMutationProfile(profileList); - return profileList; - } - - private ArrayList buildProfileList2() { - ArrayList profileList = new ArrayList(); - addCnaPathwayProfile(profileList); - addRaeProfile(profileList); - addMutationProfile(profileList); - return profileList; - } - - private void addMRNAProfile(ArrayList profileList) { - GeneticProfile geneticProfile = new GeneticProfile("gbm_mrna", 1, - GeneticAlterationType.MRNA_EXPRESSION, - "CONTINUOUS", "GBM mRNA", "GBM Affymetrix mRNA", true); - profileList.add(geneticProfile); - } - - private void addRaeProfile(ArrayList profileList) { - GeneticProfile gisticProfile = new GeneticProfile("gbm_rae", 1, - GeneticAlterationType.COPY_NUMBER_ALTERATION, - "DISCRETE", "GBM RAE", "GBM RAE Results", true); - profileList.add(gisticProfile); - } - - private void addMutationProfile(ArrayList profileList) { - GeneticProfile mutationProfile = new GeneticProfile("gbm_mut", 1, - GeneticAlterationType.MUTATION_EXTENDED, - "MAF", "GBM Mutations", "GBM Whole Exome Mutations", true); - profileList.add(mutationProfile); - } - - private void addGisticProfile(ArrayList profileList) { - GeneticProfile gisticProfile = new GeneticProfile("gbm_gistic", 1, - GeneticAlterationType.COPY_NUMBER_ALTERATION, - "DISCRETE", "GBM GISTIC", "GBM GISTIC Results", true); - profileList.add(gisticProfile); - } - - private void addCnaPathwayProfile(ArrayList profileList) { - GeneticProfile otherCNAProfile = new GeneticProfile("cna_pathways", 1, - GeneticAlterationType.COPY_NUMBER_ALTERATION, - "DISCRETE", "CNA Pathways", "CNA Pathway Results", true); - profileList.add(otherCNAProfile); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/model/TestExtendedMutationMap.java b/core/src/test/java/org/mskcc/cbio/portal/model/TestExtendedMutationMap.java deleted file mode 100644 index e64676d3420..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/model/TestExtendedMutationMap.java +++ /dev/null @@ -1,101 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; -import static org.junit.Assert.assertEquals; - -import java.util.ArrayList; - -import org.junit.Test; - - - -/** - * Tests the Extended Mutation Map. - * - * @author Ethan Cerami. - */ -public class TestExtendedMutationMap { - private static final String BRCA1 = "BRCA1"; - private static final String BRCA2 = "BRCA2"; - private static final Integer SAMPLE_A = 1; - - @Test - public void test1() { - CanonicalGene brca1 = new CanonicalGene(672, BRCA1); - CanonicalGene brca2 = new CanonicalGene(675, BRCA2); - ExtendedMutation mutation1 = createMutation1(brca1, SAMPLE_A); - ExtendedMutation mutation2 = createMutation1(brca1, SAMPLE_A); - ExtendedMutation mutation3 = createMutation1(brca2, SAMPLE_A); - - ArrayList mutationList = - createMutationList(mutation1, mutation2, mutation3); - - ArrayList sampleList = new ArrayList(); - sampleList.add(SAMPLE_A); - - ExtendedMutationMap map = new ExtendedMutationMap(mutationList, sampleList); - ArrayList mutationReturnList = map.getExtendedMutations(BRCA1, SAMPLE_A); - assertEquals (2, mutationReturnList.size()); - - // Try with mixed sample - mutationReturnList = map.getExtendedMutations("brCA1", SAMPLE_A); - assertEquals (2, mutationReturnList.size()); - - mutationReturnList = map.getExtendedMutations(BRCA2, SAMPLE_A); - assertEquals (1, mutationReturnList.size()); - - mutationReturnList = map.getExtendedMutations(BRCA1); - assertEquals(2, mutationReturnList.size()); - - assertEquals(2, map.getNumGenesWithExtendedMutations()); - assertEquals(2, map.getNumExtendedMutations(BRCA1)); - } - - private ArrayList createMutationList(ExtendedMutation mutation1, - ExtendedMutation mutation2, ExtendedMutation mutation3) { - ArrayList mutationList = new ArrayList(); - mutationList.add(mutation1); - mutationList.add(mutation2); - mutationList.add(mutation3); - return mutationList; - } - - private ExtendedMutation createMutation1(CanonicalGene gene, Integer sampleId) { - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation2.setGene(gene); - mutation2.setSampleId(sampleId); - mutation2.setProteinChange("C22G"); - return mutation2; - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/model/TestGeneticEventComparator.java b/core/src/test/java/org/mskcc/cbio/portal/model/TestGeneticEventComparator.java deleted file mode 100644 index 748c3a0d8e3..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/model/TestGeneticEventComparator.java +++ /dev/null @@ -1,138 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - - -import java.util.ArrayList; -import java.util.EnumSet; - -import org.junit.Assert; -import junit.framework.TestCase; - -import org.junit.Test; -import org.mskcc.cbio.portal.model.GeneticEventImpl.CNA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.MRNA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.RPPA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.mutations; - -public class TestGeneticEventComparator extends TestCase{ - - @Test - public void testGeneticEventComparator() { - GeneticEventComparator aGeneticEventComparator = new GeneticEventComparator(); - - GeneticEventImpl ge1 = new GeneticEventImpl( 1, 1, 1,true ); - testReflexiveEquals( aGeneticEventComparator, ge1, Integer.valueOf(0), false ); - - GeneticEventImpl ge2 = new GeneticEventImpl( 1, 1, 1, true ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, true ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 0 ); - - ge1 = new GeneticEventImpl( 0, 1, 1, true ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 1 ); - - ge1 = new GeneticEventImpl( 2, 1, 1, true ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, -1 ); - - ge1 = new GeneticEventImpl( 1, 0, 0, true ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 1 ); - - ge1 = new GeneticEventImpl( 1, 1, 0, false ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 1 ); - - } - - @Test - public void testGeneticEventComparatorArrayListOfEnumSetOfCNAArrayListOfEnumSetOfMRNAArrayListOfEnumSetOfmutations() { - - ArrayList> CNAsortOrder = new ArrayList>(); - CNAsortOrder.add(EnumSet.of(CNA.AMPLIFIED)); - CNAsortOrder.add(EnumSet.of(CNA.HOMODELETED)); - CNAsortOrder.add(EnumSet.of(CNA.GAINED, CNA.DIPLOID, CNA.HEMIZYGOUSLYDELETED)); - CNAsortOrder.add(EnumSet.of(CNA.NONE)); - - GeneticEventComparator aGeneticEventComparator = new GeneticEventComparator( - CNAsortOrder, - GeneticEventComparator.defaultMRNASortOrder(), - GeneticEventComparator.defaultRPPASortOrder(), - GeneticEventComparator.defaultMutationsSortOrder()); - - GeneticEventImpl ge1 = new GeneticEventImpl( CNA.AMPLIFIED, MRNA.NORMAL, RPPA.NORMAL, mutations.MUTATED ); - - Assert.assertEquals( false, aGeneticEventComparator.equals(ge1, Integer.valueOf(0)) ); - - GeneticEventImpl ge2 = new GeneticEventImpl( CNA.AMPLIFIED, MRNA.NORMAL, RPPA.NORMAL, mutations.MUTATED ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, true ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 0 ); - - ge2 = new GeneticEventImpl( CNA.HOMODELETED, MRNA.NORMAL, RPPA.NORMAL, mutations.MUTATED ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, -1 ); - - ge1 = new GeneticEventImpl( CNA.GAINED, MRNA.NORMAL, RPPA.NORMAL, mutations.MUTATED ); - ge2 = new GeneticEventImpl( CNA.DIPLOID, MRNA.NORMAL, RPPA.NORMAL, mutations.MUTATED ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, true ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 0 ); - - ge2 = new GeneticEventImpl( CNA.HOMODELETED, MRNA.NORMAL, RPPA.NORMAL, mutations.MUTATED ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 1 ); - - ge2 = new GeneticEventImpl( CNA.HOMODELETED, MRNA.NORMAL, RPPA.NORMAL, mutations.UNMUTATED ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 1 ); - - ge2 = new GeneticEventImpl( CNA.DIPLOID, MRNA.UPREGULATED, RPPA.UPREGULATED, mutations.UNMUTATED ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, 1 ); - - ge2 = new GeneticEventImpl( CNA.HEMIZYGOUSLYDELETED, MRNA.DOWNREGULATED, RPPA.DOWNREGULATED, mutations.UNMUTATED ); - testReflexiveEquals( aGeneticEventComparator, ge1, ge2, false ); - testReflexiveCompare( aGeneticEventComparator, ge1, ge2, -1 ); - - } - - private void testReflexiveCompare( GeneticEventComparator aGeneticEventComparator, GeneticEventImpl ge1, GeneticEventImpl ge2, int expected ){ - Assert.assertEquals( expected, aGeneticEventComparator.compare(ge1, ge2) ); - Assert.assertEquals( -expected, aGeneticEventComparator.compare(ge2, ge1) ); - } - - private void testReflexiveEquals( GeneticEventComparator aGeneticEventComparator, Object ge1, Object ge2, boolean expected ){ - Assert.assertEquals( expected, aGeneticEventComparator.equals(ge1, ge2) ); - Assert.assertEquals( expected, aGeneticEventComparator.equals(ge2, ge1) ); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/model/TestGeneticEventImpl.java b/core/src/test/java/org/mskcc/cbio/portal/model/TestGeneticEventImpl.java deleted file mode 100644 index b181f46973a..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/model/TestGeneticEventImpl.java +++ /dev/null @@ -1,90 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.model; - -import static org.junit.Assert.fail; -import org.junit.Assert; - -import org.junit.Test; -import org.mskcc.cbio.portal.model.GeneticEventImpl.CNA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.MRNA; -import org.mskcc.cbio.portal.model.GeneticEventImpl.mutations; - -public class TestGeneticEventImpl { - - @Test - public void testGeneticEventImplIntIntBoolean() { - - GeneticEventImpl aGeneticEventImpl = new GeneticEventImpl( 2, 1, 1, true ); - Assert.assertEquals( CNA.AMPLIFIED, aGeneticEventImpl.getCnaValue() ); - Assert.assertEquals( true, aGeneticEventImpl.isCnaAmplified() ); - Assert.assertEquals( false, aGeneticEventImpl.isCnaHeterozygousDeleted() ); - Assert.assertEquals( false, aGeneticEventImpl.isCnaHomozygouslyDeleted() ); - - Assert.assertEquals( MRNA.UPREGULATED, aGeneticEventImpl.getMrnaValue() ); - Assert.assertEquals( true, aGeneticEventImpl.isMRNAUpRegulated() ); - Assert.assertEquals( false, aGeneticEventImpl.isMRNADownRegulated() ); - - Assert.assertEquals( mutations.MUTATED, aGeneticEventImpl.getMutationValue() ); - Assert.assertEquals( true, aGeneticEventImpl.isMutated() ); - - aGeneticEventImpl = new GeneticEventImpl( 0, 0, 0, false ); - Assert.assertEquals( CNA.DIPLOID, aGeneticEventImpl.getCnaValue() ); - Assert.assertEquals( false, aGeneticEventImpl.isCnaAmplified() ); - Assert.assertEquals( false, aGeneticEventImpl.isCnaHeterozygousDeleted() ); - Assert.assertEquals( false, aGeneticEventImpl.isCnaHomozygouslyDeleted() ); - - Assert.assertEquals( MRNA.NORMAL, aGeneticEventImpl.getMrnaValue() ); - Assert.assertEquals( false, aGeneticEventImpl.isMRNAUpRegulated() ); - Assert.assertEquals( false, aGeneticEventImpl.isMRNADownRegulated() ); - - Assert.assertEquals( mutations.UNMUTATED, aGeneticEventImpl.getMutationValue() ); - Assert.assertEquals( false, aGeneticEventImpl.isMutated() ); - - try { - aGeneticEventImpl = new GeneticEventImpl( 3, 2, 2, true ); - fail("Should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals("Illegal cnaValue: 3", e.getMessage() ); - } - - try { - aGeneticEventImpl = new GeneticEventImpl( 1, 2, 2, true ); - fail("Should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals("Illegal mrnaValue: 2", e.getMessage() ); - } - - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/mut_diagram/TestPileup.java b/core/src/test/java/org/mskcc/cbio/portal/mut_diagram/TestPileup.java deleted file mode 100644 index f2215b06c77..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/mut_diagram/TestPileup.java +++ /dev/null @@ -1,302 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertTrue; -import static org.junit.Assert.fail; - -import java.util.Collections; -import java.util.List; - -import org.junit.Test; -import org.mskcc.cbio.portal.model.ExtendedMutation; - -import com.google.common.collect.ImmutableList; - -/** - * Unit test for Pileup. - */ -public final class TestPileup { - - @Test - public void testConstructor() { - Pileup pileup = new Pileup("label", 42, 84, 24); - assertNotNull(pileup); - assertEquals("label", pileup.getLabel()); - assertEquals(42, pileup.getLocation()); - assertEquals(84, pileup.getCount()); - } - - @Test - public void testConstructorEmptyLabel() { - Pileup pileup = new Pileup("", 42, 84, 24); - assertEquals("", pileup.getLabel()); - } - - @Test - public void testConstructorNullLabel() { - Pileup pileup = new Pileup(null, 42, 84, 24); - assertNull(pileup.getLabel()); - } - - @Test(expected=NullPointerException.class) - public void testPileupNullMutations() { - Pileup.pileup(null); - } - - @Test - public void testPileupEmptyMutations() { - List pileups = Pileup.pileup(Collections.emptyList()); - assertNotNull(pileups); - assertTrue(pileups.isEmpty()); - } - - @Test - public void testPileupSingleMutation() { - ExtendedMutation mutation = new ExtendedMutation(); - mutation.setProteinChange("A123K"); - mutation.setSampleId(1); - - List pileups = Pileup.pileup(ImmutableList.of(mutation)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(1, pileup.getCount()); - } - - @Test - public void testPileupMultipleMutationsSameLocationDifferentSampleIds() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange("A123K"); - mutation2.setProteinChange("A123K"); - mutation0.setSampleId(1); - mutation1.setSampleId(2); - mutation2.setSampleId(3); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(3, pileup.getCount()); - } - - @Test - public void testPileupMultipleMutationsSameLocationSameSampleIds() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange("A123K"); - mutation2.setProteinChange("A123K"); - mutation0.setSampleId(1); - mutation1.setSampleId(1); - mutation2.setSampleId(1); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(1, pileup.getCount()); - } - - @Test - public void testPileupMultipleMutationsSameLocationNullSampleId() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange("A123K"); - mutation2.setProteinChange("A123K"); - mutation0.setSampleId(1); - mutation1.setSampleId(2); - mutation2.setSampleId(3); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(3, pileup.getCount()); - } - - @Test - public void testPileupMultipleMutationsSameLocationDifferentAminoAcidChange() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange("A123K"); - mutation2.setProteinChange("A123G"); - mutation0.setSampleId(1); - mutation1.setSampleId(2); - mutation2.setSampleId(3); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123G/A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(3, pileup.getCount()); - } - - // not sure this could happen, unless one caseId can have different phases - @Test - public void testPileupMultipleMutationsSameLocationDifferentAminoAcidChangeSameSampleIds() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange("A123K"); - mutation2.setProteinChange("A123G"); - mutation0.setSampleId(1); - mutation1.setSampleId(1); - mutation2.setSampleId(1); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123G/A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(2, pileup.getCount()); - } - - @Test - public void testPileupMultipleMutationsDifferentLocations() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange("A123K"); - mutation2.setProteinChange("K234G"); - mutation0.setSampleId(1); - mutation1.setSampleId(2); - mutation2.setSampleId(3); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(2, pileups.size()); - Pileup pileup = pileups.get(0); - if (pileup.getLocation() == 123) { - assertEquals("A123K", pileup.getLabel()); - assertEquals(2, pileup.getCount()); - } - else if (pileup.getLocation() == 234) { - assertEquals("K234G", pileup.getLabel()); - assertEquals(1, pileup.getCount()); - } - else { - fail(); - } - } - - @Test - public void testPileupMultipleMutationsNumberFormatException() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange("missense"); - mutation2.setProteinChange("A123K"); - mutation0.setSampleId(1); - mutation1.setSampleId(2); - mutation2.setSampleId(3); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(2, pileup.getCount()); - } - - @Test - public void testPileupMultipleMutationsNullLabel() { - ExtendedMutation mutation0 = new ExtendedMutation(); - ExtendedMutation mutation1 = new ExtendedMutation(); - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation0.setProteinChange("A123K"); - mutation1.setProteinChange(null); - mutation2.setProteinChange("A123K"); - mutation0.setSampleId(1); - mutation1.setSampleId(2); - mutation2.setSampleId(3); - - List pileups = Pileup.pileup(ImmutableList.of(mutation0, mutation1, mutation2)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("A123K", pileup.getLabel()); - assertEquals(123, pileup.getLocation()); - assertEquals(2, pileup.getCount()); - } - - @Test - public void testPileupsLowercasePDotSAnimoAcidPosition() { - ExtendedMutation mutation = new ExtendedMutation(); - mutation.setProteinChange("p.S310F"); - mutation.setSampleId(1); - - List pileups = Pileup.pileup(ImmutableList.of(mutation)); - assertNotNull(pileups); - assertEquals(1, pileups.size()); - Pileup pileup = pileups.get(0); - - assertEquals("p.S310F", pileup.getLabel()); - assertEquals(310, pileup.getLocation()); - assertEquals(1, pileup.getCount()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/mut_diagram/TestSequence.java b/core/src/test/java/org/mskcc/cbio/portal/mut_diagram/TestSequence.java deleted file mode 100644 index ecd19d657d4..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/mut_diagram/TestSequence.java +++ /dev/null @@ -1,222 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.mut_diagram; - -import static com.fasterxml.jackson.databind.DeserializationFeature.ACCEPT_SINGLE_VALUE_AS_ARRAY; -import static com.google.common.collect.Maps.newHashMap; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertNotSame; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertTrue; - -import java.io.InputStream; -import java.io.StringWriter; -import java.util.Collections; -import java.util.List; -import java.util.Map; - -import org.junit.Before; -import org.junit.Test; - -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.type.TypeFactory; -import com.google.common.collect.ImmutableList; - -/** - * Unit test for Sequence. - */ -public class TestSequence { - private Sequence sequence; - - @Before - public void setUp() { - sequence = new Sequence(); - sequence.setLength(42); - Options options = new Options(); - options.setBaseUrl("baseUrl"); - sequence.setOptions(options); - Markup markup = new Markup(); - markup.setStart(24); - sequence.setMarkups(ImmutableList.of(markup)); - Map metadata = newHashMap(); - metadata.put("key", "value"); - sequence.setMetadata(metadata); - Motif motif = new Motif(); - motif.setStart(24); - sequence.setMotifs(ImmutableList.of(motif)); - Region region = new Region(); - region.setStart(24); - sequence.setRegions(ImmutableList.of(region)); - } - - @Test - public void testSerializeToJson() throws Exception { - ObjectMapper objectMapper = new ObjectMapper(); - StringWriter stringWriter = new StringWriter(); - objectMapper.writeValue(stringWriter, sequence); - assertNotNull(stringWriter.toString()); - } - - @Test - public void testDeserializeFromJsonO14640() throws Exception { - ObjectMapper objectMapper = new ObjectMapper(); - objectMapper.configure(ACCEPT_SINGLE_VALUE_AS_ARRAY, true); - TypeFactory typeFactory = objectMapper.getTypeFactory(); - InputStream inputStream = getClass().getResourceAsStream("/O14640.json"); - List sequences = objectMapper.readValue(inputStream, typeFactory.constructCollectionType(List.class, Sequence.class)); - assertNotNull(sequences); - assertEquals(1, sequences.size()); - Sequence s = sequences.get(0); - assertEquals(695, s.getLength()); - assertEquals(5, s.getRegions().size()); - assertEquals(0, s.getMarkups().size()); - assertEquals(7, s.getMotifs().size()); - assertEquals("uniprot", s.getMetadata().get("database")); - } - - @Test - public void testDeserializeFromJsonEGFR_HUMAN() throws Exception { - ObjectMapper objectMapper = new ObjectMapper(); - objectMapper.configure(ACCEPT_SINGLE_VALUE_AS_ARRAY, true); - TypeFactory typeFactory = objectMapper.getTypeFactory(); - InputStream inputStream = getClass().getResourceAsStream("/EGFR_HUMAN.json"); - List sequences = objectMapper.readValue(inputStream, typeFactory.constructCollectionType(List.class, Sequence.class)); - assertNotNull(sequences); - assertEquals(1, sequences.size()); - Sequence s = sequences.get(0); - assertEquals(1210, s.getLength()); - assertEquals(4, s.getRegions().size()); - assertEquals(27, s.getMarkups().size()); - assertEquals(8, s.getMotifs().size()); - assertEquals("uniprot", s.getMetadata().get("database")); - } - - @Test - public void testDeepCopyNullMarkups() { - sequence.setMarkups(null); - Sequence copy = sequence.deepCopy(); - assertNull(copy.getMarkups()); - } - - @Test - public void testDeepCopyNullMetadata() { - sequence.setMetadata(null); - Sequence copy = sequence.deepCopy(); - assertNull(copy.getMetadata()); - } - - @Test - public void testDeepCopyNullMotifs() { - sequence.setMotifs(null); - Sequence copy = sequence.deepCopy(); - assertNull(copy.getMotifs()); - } - - @Test - public void testDeepCopyNullOptions() { - sequence.setOptions(null); - Sequence copy = sequence.deepCopy(); - assertNull(copy.getOptions()); - } - - @Test - public void testDeepCopyOptionsNullBaseUrl() { - Options options = new Options(); - options.setBaseUrl(null); - sequence.setOptions(options); - Sequence copy = sequence.deepCopy(); - assertNotNull(copy.getOptions()); - assertNull(copy.getOptions().getBaseUrl()); - } - - @Test - public void testDeepCopyNullRegions() { - sequence.setRegions(null); - Sequence copy = sequence.deepCopy(); - assertNull(copy.getRegions()); - } - - @Test - public void testDeepCopy() { - Sequence copy = sequence.deepCopy(); - assertNotSame(sequence, copy); - assertEquals(sequence.getLength(), copy.getLength()); - assertEquals(sequence.getMarkups(), copy.getMarkups()); - assertNotSame(sequence.getMarkups(), copy.getMarkups()); - assertEquals(sequence.getMetadata(), copy.getMetadata()); - assertNotSame(sequence.getMetadata(), copy.getMetadata()); - assertEquals(sequence.getMotifs(), copy.getMotifs()); - assertNotSame(sequence.getMotifs(), copy.getMotifs()); - assertEquals(sequence.getOptions().getBaseUrl(), copy.getOptions().getBaseUrl()); - assertNotSame(sequence.getOptions(), copy.getOptions()); - assertEquals(sequence.getRegions(), copy.getRegions()); - assertNotSame(sequence.getRegions(), copy.getRegions()); - } - - @Test - public void testWithMarkupsNullMarkups() { - sequence.setMarkups(null); - Sequence withMarkups = sequence.withMarkups(null); - assertNull(withMarkups.getMarkups()); - } - - @Test - public void testWithMarkupsNullAdditionalMarkups() { - Sequence withMarkups = sequence.withMarkups(null); - assertNotNull(withMarkups.getMarkups()); - assertEquals(1, withMarkups.getMarkups().size()); - assertEquals(24, withMarkups.getMarkups().get(0).getStart()); - } - - @Test - public void testWithMarkupsEmptyAdditionalMarkups() { - List empty = Collections.emptyList(); - Sequence withMarkups = sequence.withMarkups(empty); - assertNotNull(withMarkups.getMarkups()); - assertEquals(1, withMarkups.getMarkups().size()); - assertEquals(24, withMarkups.getMarkups().get(0).getStart()); - } - - @Test - public void testWithMarkups() { - Markup markup = new Markup(); - markup.setStart(13); - Sequence withMarkups = sequence.withMarkups(ImmutableList.of(markup)); - assertNotNull(withMarkups.getMarkups()); - assertEquals(2, withMarkups.getMarkups().size()); - for (Markup m : withMarkups.getMarkups()) { - assertTrue(m.getStart() == 13 || m.getStart() == 24); - } - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestCallOncoPrintSpecParser.java b/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestCallOncoPrintSpecParser.java deleted file mode 100644 index 6cc5c20c80c..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestCallOncoPrintSpecParser.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; -import static org.junit.Assert.*; -import org.junit.Test; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.CallOncoPrintSpecParser; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ParserOutput; - - - -public class TestCallOncoPrintSpecParser { - - // TODO - @Test - public void testCallOncoPrintSpecParser() { - assertTrue(true); - - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestOncoPrintSpecificationInParser.java b/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestOncoPrintSpecificationInParser.java deleted file mode 100644 index 30f9e6e2ceb..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestOncoPrintSpecificationInParser.java +++ /dev/null @@ -1,666 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.io.ByteArrayInputStream; -import java.lang.reflect.InvocationTargetException; -import java.lang.reflect.Method; -import java.util.ArrayList; -import java.util.Iterator; - -import org.antlr.runtime.ANTLRInputStream; -import org.antlr.runtime.CommonTokenStream; -import org.antlr.runtime.RecognitionException; -import org.antlr.runtime.tree.CommonTree; -import org.antlr.runtime.tree.CommonTreeNodeStream; -import org.junit.Assert; -import org.junit.Test; - -/** - * Tests the parser version that generates and walks an AST. - * - * @author Arthur Goldberg - */ -public class TestOncoPrintSpecificationInParser { - - @Test - public void testBadGeneNameInASTParser() { - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setDefault( 1.0, 1.0 ); - ParserOutput theParserOutput = CallOncoPrintSpecParser.callOncoPrintSpecParser - ( "2-PDE", theOncoPrintGeneDisplaySpec ); - } - - @Test - public void testContinuousDataTypeInequalityInParser() { - - tryAcontinuousDataTypeInequality(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f, "Expression <= 1.3"); - tryAcontinuousDataTypeInequality(GeneticDataTypes.Methylation, - ComparisonOp.Greater, 1f, "Methylation > 1"); - tryAcontinuousDataTypeInequality(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 0f, "Expression <= 0"); - tryAcontinuousDataTypeInequality(GeneticDataTypes.Expression, - ComparisonOp.GreaterEqual, -1.5f, "Expression >=-1.5"); - - // Abbreviations - tryAcontinuousDataTypeInequality(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f, "Exp<= 1.3"); - tryAcontinuousDataTypeInequality(GeneticDataTypes.Methylation, - ComparisonOp.Greater, 1f, "Me>1"); - tryAcontinuousDataTypeInequality(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 0f, "E<= 0"); - tryAcontinuousDataTypeInequality(GeneticDataTypes.Expression, - ComparisonOp.GreaterEqual, -1.5f, "Ex>=-1.5"); - - // nicknames - tryAcontinuousDataTypeInequality( GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f , "MRNA<= 1.3" ); - tryAcontinuousDataTypeInequality( GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f , "microRNA<= 1.3" ); - tryAcontinuousDataTypeInequality( GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f , "MR<= 1.3" ); - - // error handling - // semantic error, generate by the tree grammar - tryErroneousProduction( "continuousDataTypeInequality", "barf < 1.3", "Error at char 1 of line 1: " + - "'barf' is not a valid genetic data type."); - } - - private void tryAcontinuousDataTypeInequality( - GeneticDataTypes aGeneticDataTypes, ComparisonOp aComparisonOp, - float t, String testLangFragment) { - try { - - ContinuousDataTypeSpec aContinuousDataTypeSpec = new ContinuousDataTypeSpec( - aGeneticDataTypes, aComparisonOp, t); - - Assert.assertEquals(aContinuousDataTypeSpec, - (ContinuousDataTypeSpec) parseMethod( "continuousDataTypeInequality", testLangFragment) ); - - } catch (RecognitionException e) { - System.out.println("testcontinuousDataTypeInequality: RecognitionException: " + e.getMessage()); - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - @Test - public void testDiscreteDataTypeInParser() { - - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.LessEqual, GeneticTypeLevel.Gained, "CopyNumberAlteration <= Gain"); - - // Abbreviations - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Less, GeneticTypeLevel.Diploid, "cna < Di"); - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.GreaterEqual, GeneticTypeLevel.HomozygouslyDeleted, "C >= Hom"); - - // nicknames - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Greater, GeneticTypeLevel.HemizygouslyDeleted, "CNA > Hetloss"); - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Less, GeneticTypeLevel.HomozygouslyDeleted, "CNA < Homdel"); - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Less, GeneticTypeLevel.HomozygouslyDeleted, "CNA < hom"); - - // aDiscreteDataTypeSetSpecs - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HemizygouslyDeleted, "C -1"); - tryADiscreteDataType(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Amplified, "C 2"); - - // test errors - tryErroneousProduction( "discreteDataType", "Foo <= blah", "Error at char 1 of line 1: 'Foo <= blah' " + - "is not a valid discrete genetic data type and discrete genetic data level." ); - tryErroneousProduction( "discreteDataType", "\nExp <= blah", "Error at char 1 of line 2: 'Exp <= blah' " + - "is not a valid discrete genetic data type and discrete genetic data level." ); - tryErroneousProduction( "discreteDataType", "CNA 5", "Error at char 1 of line 1: 'CNA 5' is " + - "not a valid genetic data type and GISTIC code." ); - } - - private void tryADiscreteDataType( - GeneticDataTypes aGeneticDataTypes, ComparisonOp aComparisonOp, - GeneticTypeLevel aGeneticTypeLevel, String testLangFragment) { - - try { - - DiscreteDataTypeSpec aDiscreteDataTypeSpec = new DiscreteDataTypeSpec( - aGeneticDataTypes, aComparisonOp, aGeneticTypeLevel); - Assert.assertTrue(aDiscreteDataTypeSpec - .equals((DiscreteDataTypeSpec) parseMethod( "discreteDataType", testLangFragment) )); - - } catch (RecognitionException e) { - System.out.println("testDiscreteDataType: RecognitionException: " + e.getMessage()); - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - // overloaded; this for DiscreteDataTypeSetSpecs - private void tryADiscreteDataType( - GeneticDataTypes aGeneticDataTypes, GeneticTypeLevel aGeneticTypeLevel, String testLangFragment) { - try { - - DiscreteDataTypeSetSpec aDiscreteDataTypeSetSpec = new DiscreteDataTypeSetSpec( - aGeneticDataTypes, aGeneticTypeLevel); - Assert.assertTrue( aDiscreteDataTypeSetSpec - .equals((DiscreteDataTypeSetSpec) parseMethod( "discreteDataType", testLangFragment) )); - - } catch (RecognitionException e) { - System.out.println("testDiscreteDataType: RecognitionException: " + e.getMessage()); - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - @Test - public void testDataTypeSpecInParser() { - - try { - // overloaded several times: these test alternative: discreteDataType - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.LessEqual, GeneticTypeLevel.Gained, "CopyNumberAlteration <= Gain"); - - // Abbreviations - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Less, GeneticTypeLevel.Diploid, "cna < Di"); - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.GreaterEqual, GeneticTypeLevel.HomozygouslyDeleted, "C >= Hom"); - - // nicknames - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Greater, GeneticTypeLevel.HemizygouslyDeleted, "CNA > Hetloss"); - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Less, GeneticTypeLevel.HomozygouslyDeleted, "CNA < Homdel"); - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.Less, GeneticTypeLevel.HomozygouslyDeleted, "CNA < hom"); - - // aDiscreteDataTypeSetSpecs - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HemizygouslyDeleted, "C -1"); - tryADataTypeSpec(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Amplified, "C 2"); - - tryADataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f, "Expression <= 1.3"); - tryADataTypeSpec(GeneticDataTypes.Methylation, - ComparisonOp.Greater, 1f, "Methylation > 1"); - tryADataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 0f, "Expression <= 0"); - tryADataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.GreaterEqual, -1.5f, "Expression >=-1.5"); - - // Abbreviations - tryADataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f, "Exp<= 1.3"); - tryADataTypeSpec(GeneticDataTypes.Methylation, - ComparisonOp.Greater, 1f, "Me>1"); - tryADataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 0f, "E<= 0"); - tryADataTypeSpec(GeneticDataTypes.Expression, - ComparisonOp.GreaterEqual, -1.5f, "Ex>=-1.5"); - - // nicknames - tryADataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f , "MRNA<= 1.3" ); - tryADataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f , "micro<= 1.3" ); - tryADataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.LessEqual, 1.3f , "MR<= 1.3" ); - - } catch (RecognitionException e) { - e.printStackTrace(); - } - } - - // overloaded several times: this tests alternative: dataTypeName // may be discrete or continuous - private void tryADataTypeSpec( GeneticDataTypes aGeneticDataTypes, String testLangFragment) - throws RecognitionException{ - ConcreteDataTypeSpec aConcreteDataTypeSpec = new ConcreteDataTypeSpec( aGeneticDataTypes ); - try { - Assert.assertTrue( aConcreteDataTypeSpec.equals((ConcreteDataTypeSpec) parseMethod - ( "dataTypeSpec", testLangFragment) )); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - // overloaded several times: this tests alternative: dataTypeLevel // must be discrete - private void tryADataTypeSpec( GeneticDataTypes aGeneticDataType, GeneticTypeLevel aGeneticTypeLevel, - String testLangFragment) throws RecognitionException{ - DiscreteDataTypeSetSpec aDiscreteDataTypeSetSpec = new DiscreteDataTypeSetSpec( aGeneticDataType, - aGeneticTypeLevel ); - try { - Assert.assertTrue( aDiscreteDataTypeSetSpec.equals((DiscreteDataTypeSetSpec) parseMethod - ( "dataTypeSpec", testLangFragment) )); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - // overloaded several times: this tests alternative: discreteDataType - private void tryADataTypeSpec( GeneticDataTypes aGeneticDataType, ComparisonOp aComparisonOp, - GeneticTypeLevel aGeneticTypeLevel, - String testLangFragment) throws RecognitionException{ - DiscreteDataTypeSpec aDiscreteDataTypeSpec = new DiscreteDataTypeSpec( - aGeneticDataType, aComparisonOp, aGeneticTypeLevel); - try { - Assert.assertTrue(aDiscreteDataTypeSpec - .equals((DiscreteDataTypeSpec) parseMethod( "dataTypeSpec", testLangFragment) )); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - // overloaded several times: this tests alternative: continuousDataTypeInequality - private void tryADataTypeSpec( GeneticDataTypes aGeneticDataType, ComparisonOp aComparisonOp, float threshold, - String testLangFragment) throws RecognitionException{ - ContinuousDataTypeSpec aContinuousDataTypeSpec = new ContinuousDataTypeSpec( - aGeneticDataType, aComparisonOp, threshold); - try { - Assert.assertTrue(aContinuousDataTypeSpec - .equals((ContinuousDataTypeSpec) parseMethod( "dataTypeSpec", testLangFragment) )); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - @Test - public void testFullDataTypeSpecInParser() { - try { - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec = (OncoPrintGeneDisplaySpec)parseMethod - ( "fullDataTypeSpec", ": Mutation Mut Meth HetLoss Exp<-1 " + - "HetLoss Exp>=1.5 Exp <= -1.5 C -2 Expression<-2; " ); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Mutation, null )); - - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Methylation, 2f )); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Methylation, -33f )); - - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Expression, -3f )); - Assert.assertFalse( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Expression, -1f )); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Expression, 1.5f )); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Expression, 3f )); - - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HemizygouslyDeleted )); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HomozygouslyDeleted )); - - theResultFullDataTypeSpec = (OncoPrintGeneDisplaySpec)parseMethod( "fullDataTypeSpec", ": C ; " ); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HemizygouslyDeleted )); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HomozygouslyDeleted )); - Assert.assertFalse( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Expression, -1f )); - - theResultFullDataTypeSpec = (OncoPrintGeneDisplaySpec)parseMethod( "fullDataTypeSpec", ": C Exp; " ); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HemizygouslyDeleted )); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HomozygouslyDeleted )); - Assert.assertTrue( theResultFullDataTypeSpec.satisfy(GeneticDataTypes.Expression, -1f )); - - } catch (RecognitionException e) { - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - - // try error - // this exercises the error produced by dataTypeSpec, which I cannot trigger with that production - tryErroneousProduction( "fullDataTypeSpec", ":FOOL;", "Error at char 2 of line 1: " + - "'FOOL' is not a valid genetic data type or data level." ); - } - - @Test - public void testGeneListInParser() { - try { - GeneSet theGeneSet = (GeneSet) parseMethod( "userGeneList", - " DATATYPES : CNA Mutation C -2 Expression<-2; amazin " + - "g5 : CNA Hetloss Homdel Expression <-1;" + - " DATATYPES : Meth C theGenes = theGeneSet.getGenes(); - checkAgeneWithSpec( theGenes.get(0) ); - - GeneWithSpec aGeneWithSpec = theGenes.get(2); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy( - GeneticDataTypes.Methylation)); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HomozygouslyDeleted )); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HemizygouslyDeleted )); - - } catch (RecognitionException e) { - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - @Test - public void testIndividualGeneInParser() { - try { - GeneWithSpec aGeneWithSpec = (GeneWithSpec) parseMethod( "individualGene", "amazin : " + - "CNA Mutation C -2 Expression<-2; "); - checkAgeneWithSpec(aGeneWithSpec); - - aGeneWithSpec = (GeneWithSpec) parseMethod( "individualGene", - " P53: Mutated Methy C -2 G Expression<-2 Expression<-3 Expression>=3.2; "); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy(GeneticDataTypes.Methylation)); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy(GeneticDataTypes.Mutation, - GeneticTypeLevel.Mutated )); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HomozygouslyDeleted )); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained )); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.Expression, -2.01f)); - Assert.assertFalse(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.Expression, -2.0f)); - - } catch (RecognitionException e) { - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - - // test errors - tryErroneousProduction( "individualGene", "notGene", "Error at char 1 of line 1: " + - "'notGene' is not a valid gene or microRNA name."); - } - - private void checkAgeneWithSpec(GeneWithSpec aGeneWithSpec){ - - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy( - GeneticDataTypes.CopyNumberAlteration)); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy(GeneticDataTypes.Mutation)); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy(GeneticDataTypes.Expression, -2.01f)); - Assert.assertFalse(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy(GeneticDataTypes.Expression, -2.0f)); - - } - - @Test - public void testGroupedGeneListInParser() { - try { - String n = "P53 pathway"; - String nInQuotes = '"' + n + '"'; - String inputNames = "CCND1 CDKN2B CDKN2A"; - String[] names = inputNames.split(" "); - - GeneSet theGeneSet = (GeneSet) parseMethod( "userGeneList", nInQuotes + " { " + inputNames + " } "); - Assert.assertEquals( n, theGeneSet.getName() ); - ArrayList theGenes = theGeneSet.getGenes(); - int i=0; - for( GeneWithSpec aGeneWithSpec : theGenes ){ - Assert.assertEquals( names[i++], aGeneWithSpec.getName() ); - } - - theGeneSet = (GeneSet) parseMethod( "userGeneList", " { " + inputNames + " } "); - theGenes = theGeneSet.getGenes(); - i=0; - for( GeneWithSpec aGeneWithSpec : theGenes ){ - Assert.assertEquals( names[i++], aGeneWithSpec.getName() ); - } - - theGeneSet = (GeneSet) parseMethod( "userGeneList", inputNames ); - theGenes = theGeneSet.getGenes(); - i=0; - for( GeneWithSpec aGeneWithSpec : theGenes ){ - Assert.assertEquals( names[i++], aGeneWithSpec.getName() ); - } - } catch (RecognitionException e) { - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - /* - * TODO: IMPORTANT; MAKE TEST OPERATIONAL - */ - @Test - public void testOncoPrintSpecificationInParser() { - - try { - ArrayList expectedGeneSets = new ArrayList(); - OncoPrintGeneDisplaySpec r = new OncoPrintGeneDisplaySpec(); - r.setDefault( 1.0f, 1.0f ); - GeneWithSpec g = new GeneWithSpec( "gene2" ); - g.setTheResultFullDataTypeSpec(r); - GeneSet h = new GeneSet( ); - h.addGeneWithSpec(g); - GeneWithSpec aGeneWithSpec = (GeneWithSpec) parseMethod( "individualGene", - "gene3 : Hetloss Homdel Expression <-1;"); - h.addGeneWithSpec(aGeneWithSpec); - expectedGeneSets.add( h ); - - GeneSet theGeneSet = (GeneSet) parseMethod( "userGeneList", - " { DATATYPES: AMP homo EXP<-1 exp>1 MUTated ; JAG1 JAG2 }" ); - expectedGeneSets.add( theGeneSet ); - - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec = (OncoPrintGeneDisplaySpec)parseMethod - ( "fullDataTypeSpec", ": G Amp Mutated Expression <=-2; "); - h = new GeneSet( ); - g = new GeneWithSpec( "FOO" ); - g.setTheResultFullDataTypeSpec(theResultFullDataTypeSpec); - h.addGeneWithSpec(g); - expectedGeneSets.add( h ); - - theGeneSet = (GeneSet) parseMethod( "userGeneList", - "\"P53 pathway\" { DATATYPES: G Amp Mutated Expression <=-2; CCND1 " + - "DATATYPES: Di G Am Mut E<=-2; CDKN2B CDKN2A }" + - "AR: C-1"); - expectedGeneSets.add( theGeneSet ); - - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setDefault( 1.0, 1.0 ); - ParserOutput theParserOutput = CallOncoPrintSpecParser.callOncoPrintSpecParser - ("gene2 gene3 : Hetloss Homdel Expression <-1; " + - "{ JAG1 JAG2 } " + - "DATATYPES: G Amp Mutated Expression <=-2; FOO" + - "\"P53 pathway\" { CCND1 DATATYPES: Di G Am Mut E<=-2; CDKN2B CDKN2A }", - theOncoPrintGeneDisplaySpec ); - - Assert.assertEquals( 0, theParserOutput.getSemanticsErrors().size() ); - Iterator theIterator = expectedGeneSets.iterator(); - for( GeneSet gs: theParserOutput.getTheOncoPrintSpecification().getGeneSets() ){ - - // TODO HIGH: FIX THIS; DOESN'T WORK - // Assert.assertEquals( theIterator.next().toString(), gs.toString() ); - } - } catch (RecognitionException e) { - e.printStackTrace(); - } catch (Throwable e) { - e.printStackTrace(); - } - } - - /** - * try calling the root rule (production) in the ASTwalker, - * oncoPrintSpecification - */ - @Test - public void testErrorHandlingByOncoPrintSpecificationInASTwalker() { - - // should return a list of errors - String[][] errorFilledInputAndErrors = { - // rule input error; the extra stuff like "DATATYPES: CNA ; " \ - // in the input is needed for the parser to recover; don't change it - { "continuousDataTypeInequality", "gene: barf < 1.3 ;", - "Error at char 7 of line 1: 'barf' is not a valid genetic data type." }, - { - "discreteDataType", - "g2:Foo <= blah; DATATYPES: CNA ; { X }", - "Error at char 4 of line 1: 'Foo <= blah' is not a valid discrete genetic data " + - "type and discrete genetic data level." }, - { - "discreteDataType", - "g3:Exp <= blah; DATATYPES: CNA ; ", - "Error at char 4 of line 1: 'Exp <= blah' is not a valid discrete genetic data " + - "type and discrete genetic data level." }, - { "discreteDataType", "g4: CNA 5; DATATYPES: CNA ; { X }", - "Error at char 5 of line 1: 'CNA 5' is not a valid genetic data type and GISTIC code." }, - { "fullDataTypeSpec", "DATATYPES:FOOL; DATATYPES: CNA ; ", - "Error at char 11 of line 1: 'FOOL' is not a valid genetic data type or data level." }, - }; - - String[] errors = new String[1]; - // try each error - for (String[] ruleInputError : errorFilledInputAndErrors) { - errors[0] = ruleInputError[2]; - tryOncoPrintSpecification(ruleInputError[1], errors); - } - - // try all errors - StringBuffer langFrag = new StringBuffer(); - errors = new String[ errorFilledInputAndErrors.length ]; - int i=0; - for (String[] ruleInputError : errorFilledInputAndErrors) { - langFrag.append(ruleInputError[1]+"\n" ); - // increment line #s - Integer n = Integer.valueOf(i+1); - errors[i++ ] = ruleInputError[2].replaceFirst("line 1", "line " + n.toString() ) ; - } - tryOncoPrintSpecification(langFrag.toString(), errors); - } - - private void tryOncoPrintSpecification(String testLangFragment, String[] errorMsgs) { - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setDefault( 1.0, 1.0 ); - ParserOutput theParserOutput = CallOncoPrintSpecParser.callOncoPrintSpecParser( testLangFragment, - theOncoPrintGeneDisplaySpec ); - ArrayList listOfErrors = theParserOutput.getSemanticsErrors(); - Iterator i = listOfErrors.iterator(); - for (String s : errorMsgs) { - Assert.assertEquals(s, i.next().getMessage() ); - } - } - - /** - * check that IllegalArgumentException with appropriate error message is thrown - */ - private void tryErroneousProduction( String production, String testLangFragment, String errorMsg ) { - try { - parseMethod( production, testLangFragment); - } catch (Throwable e) { - if( !(e instanceof OncoPrintLangException)){ - System.out.println( e.getClass().getName() ); - e.printStackTrace(); - } - Assert.assertTrue(e instanceof OncoPrintLangException); - Assert.assertEquals( errorMsg, e.getMessage() ); - } - } - - /** - * call method 'method' in the lexer and parser; - * loads of reflection - */ - public static Object parseMethod(String method, String prog) throws Throwable { - - // Create a stream of tokens pulled from the lexer - CommonTokenStream tokens; - // Create a parser attached to the token stream - completeOncoPrintSpecASTParser parser; - // create (empty) arg list - Class[] emptyArgList; - // get method - Method parserMethod; - Object parserRV; - try { - ByteArrayInputStream bs = new ByteArrayInputStream(prog.getBytes()); - ANTLRInputStream input = new ANTLRInputStream(bs); - // Create a lexer attached to that input stream - completeOncoPrintSpecASTLexer lexer = new completeOncoPrintSpecASTLexer(input); - tokens = new CommonTokenStream(lexer); - parser = new completeOncoPrintSpecASTParser(tokens); - - // Invoke the program rule in get return value - // get parser class - Class parserClass = parser.getClass(); - emptyArgList = new Class[] {}; - parserMethod = parserClass.getDeclaredMethod(method, emptyArgList); - - // was completeOncoPrintSpecASTParser.fullDataTypeSpec_return r = - // parser.fullDataTypeSpec(); - parserRV = parserMethod.invoke(parser); - } catch (InvocationTargetException e) { - throw e.getCause(); - } - - try { - // now call returnedObject's getTree() - // get return value class - Class rvClass = parserRV.getClass(); - - // get method - Method rvClassGetTree = rvClass.getDeclaredMethod("getTree", emptyArgList); - // call method - // was: CommonTree t = (CommonTree)r.getTree(); - CommonTree theCommonTree = (CommonTree) rvClassGetTree.invoke(parserRV); - - // Walk resulting tree; create treenode stream first - CommonTreeNodeStream nodes = new CommonTreeNodeStream(theCommonTree); - // AST nodes have payloads that point into token stream - nodes.setTokenStream(tokens); - // Create a tree Walker attached to the nodes stream - completeOncoPrintSpecASTwalker walker = new completeOncoPrintSpecASTwalker(nodes); - - // Invoke the start symbol, rule program - // invoke method 'method' on walker - return walker.getClass().getDeclaredMethod(method, emptyArgList) - .invoke(walker, (Object[]) null); - // was: return walker.fullDataTypeSpec(); - } catch (SecurityException e) { - e.printStackTrace(); - } catch (IllegalArgumentException e) { - e.printStackTrace(); - } catch (NoSuchMethodException e) { - e.printStackTrace(); - } catch (IllegalAccessException e) { - e.printStackTrace(); - } catch (InvocationTargetException e) { - throw e.getCause(); - } - return null; - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestOncoPrintSpecificationLibrary.java b/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestOncoPrintSpecificationLibrary.java deleted file mode 100644 index 92aa04d9805..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/oncoPrintSpecLanguage/TestOncoPrintSpecificationLibrary.java +++ /dev/null @@ -1,894 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.oncoPrintSpecLanguage; - -import java.util.ArrayList; -import java.util.Arrays; - -import org.junit.Assert; -import org.junit.Test; -import org.mskcc.cbio.portal.util.Direction; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ComparisonOp; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ConcreteDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ContinuousDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DiscreteDataTypeSetSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DiscreteDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneSet; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneWithSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticDataTypes; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticTypeLevel; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintGeneDisplaySpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintSpecification; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ParsedFullDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ResultDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.UniqueEnumPrefix; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.Utilities; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DataTypeSpecEnumerations.DataTypeCategory; - - -/** - * test my library of OncoPrintSpec classes, without the parser - * @author Arthur Goldberg - */ -public class TestOncoPrintSpecificationLibrary{ - - @Test - public void testComparisonOp() { - - try { - ComparisonOp aComparisonOp = ComparisonOp.convertCode(null); - Assert.fail("should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals("Invalid parsedToken: null", e.getMessage() ); - } - } - - @Test - public void testAppendSemicolons(){ - - String[][] inputOutputPairs = { - { "aaaa", "aaaa", }, - { ": xx ;", ": xx ;", }, - { ": xx ;: xx ;", ": xx ;: xx ;", }, - { ": xx ", ": xx ;", }, - { ": xx ;: xx ", ": xx ;: xx ;", }, - { ": xx : xx ;", ": xx : xx ;", }, - { ": xx \n ", ": xx ;\n ", }, - { ": xx \n: yy \n", ": xx ;\n: yy ;\n", }, - { ": xx ;foo : aa :y z\n: yy ", ": xx ;foo : aa :y z;\n: yy ;", }, - }; - - for( String [] ioPair : inputOutputPairs){ - Assert.assertEquals( ioPair[1], Utilities.appendSemis( ioPair[0] ) ); - } - } - - @Test - public void testGeneticTypeLevel() { - - Assert.assertEquals(GeneticTypeLevel.Amplified, GeneticTypeLevel.convertCNAcode(2)); - Assert.assertEquals(GeneticTypeLevel.HomozygouslyDeleted, - GeneticTypeLevel.findDataTypeLevel("HomozygouslyDeleted") ); - Assert.assertEquals(GeneticTypeLevel.HomozygouslyDeleted, - GeneticTypeLevel.findDataTypeLevel("Homdel") ); - Assert.assertEquals(GeneticTypeLevel.HomozygouslyDeleted, - GeneticTypeLevel.findDataTypeLevel("Hom") ); - Assert.assertEquals(GeneticTypeLevel.HemizygouslyDeleted, - GeneticTypeLevel.findDataTypeLevel("HemizygouslyDeleted") ); - Assert.assertEquals(GeneticTypeLevel.HemizygouslyDeleted, - GeneticTypeLevel.findDataTypeLevel("Hemi") ); - Assert.assertEquals(GeneticTypeLevel.HemizygouslyDeleted, - GeneticTypeLevel.findDataTypeLevel("Hetloss") ); - Assert.assertEquals(GeneticTypeLevel.HemizygouslyDeleted, - GeneticTypeLevel.findDataTypeLevel("HET") ); - Assert.assertEquals(GeneticTypeLevel.Diploid, - GeneticTypeLevel.findDataTypeLevel("Diploid") ); - Assert.assertEquals(GeneticTypeLevel.Diploid, - GeneticTypeLevel.findDataTypeLevel("di") ); - - } - - @Test - public void testDataTypeSpec() { - try { - DataTypeSpec.genericFindDataType( "foo", DataTypeCategory.Continuous ); - Assert.fail("Should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals( "Invalid DataType: foo", e.getMessage() ); - } - } - - @Test - public void testConcreteDataTypeSpec() { - try { - Assert.assertEquals( GeneticDataTypes.Expression, - ConcreteDataTypeSpec.findDataType("mrn") ); - Assert.assertEquals( GeneticDataTypes.Expression, - ConcreteDataTypeSpec.findDataType("EXP") ); - Assert.assertEquals( GeneticDataTypes.CopyNumberAlteration, - ConcreteDataTypeSpec.findDataType("cna") ); - Assert.assertEquals( GeneticDataTypes.CopyNumberAlteration, - ConcreteDataTypeSpec.findDataType("copy") ); - Assert.assertEquals( GeneticDataTypes.Methylation, - ConcreteDataTypeSpec.findDataType("Methylation") ); - Assert.assertEquals( GeneticDataTypes.Methylation, - ConcreteDataTypeSpec.findDataType("Methy") ); - Assert.assertEquals( GeneticDataTypes.Methylation, - ConcreteDataTypeSpec.findDataType("Met") ); - Assert.assertEquals( GeneticDataTypes.Mutation, - ConcreteDataTypeSpec.findDataType("Mutation") ); - Assert.assertEquals( GeneticDataTypes.Mutation, - ConcreteDataTypeSpec.findDataType("Mu") ); - - } catch (IllegalArgumentException e) { - - e.printStackTrace(); - } - - ConcreteDataTypeSpec aConcreteDataTypeSpec = new ConcreteDataTypeSpec - (GeneticDataTypes.Methylation); - Assert.assertTrue( aConcreteDataTypeSpec.satisfy(GeneticDataTypes.Methylation) ); - Assert.assertFalse( aConcreteDataTypeSpec.satisfy(GeneticDataTypes.Expression) ); - Assert.assertEquals( "Methylation", aConcreteDataTypeSpec.toString() ); - Assert.assertTrue( aConcreteDataTypeSpec.equals( aConcreteDataTypeSpec )); - Assert.assertTrue( aConcreteDataTypeSpec.equals - ( new ConcreteDataTypeSpec( GeneticDataTypes.Methylation) )); - Assert.assertTrue( aConcreteDataTypeSpec.equals( new ConcreteDataTypeSpec( "Methyla") )); - Assert.assertFalse( aConcreteDataTypeSpec.equals( new Object() )); - Assert.assertEquals( null, ConcreteDataTypeSpec.concreteDataTypeSpecGenerator(null) ); - Assert.assertEquals( new ConcreteDataTypeSpec(GeneticDataTypes.CopyNumberAlteration), - ConcreteDataTypeSpec.concreteDataTypeSpecGenerator("CNA") ); - Assert.assertEquals( null, ConcreteDataTypeSpec.concreteDataTypeSpecGenerator("foo") ); - - //System.out.println( aConcreteDataTypeSpec.hashCode() ); - } - - @Test - public void testContinuousDataTypeSpec() { - ContinuousDataTypeSpec aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 1.0f ); - Assert.assertTrue( aContinuousDataTypeSpec.satisfy(0.5) ); - Assert.assertFalse( aContinuousDataTypeSpec.satisfy(1.0) ); - Assert.assertTrue( aContinuousDataTypeSpec.equals( aContinuousDataTypeSpec ) ); - Assert.assertFalse( aContinuousDataTypeSpec.equals( Float.valueOf(0.3f) ) ); - Assert.assertTrue( aContinuousDataTypeSpec.equals( - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 1.0f ) ) ); - Assert.assertFalse( aContinuousDataTypeSpec.equals( - new ContinuousDataTypeSpec( GeneticDataTypes.Methylation, - ComparisonOp.convertCode("<"), 1.0f ) ) ); - Assert.assertFalse( aContinuousDataTypeSpec.equals( - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), 1.0f ) ) ); - Assert.assertFalse( aContinuousDataTypeSpec.equals( - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 5.0f ) ) ); - - // copy constructor and new Instance - Assert.assertEquals( null, ContinuousDataTypeSpec.newInstance(null) ); - Assert.assertEquals( aContinuousDataTypeSpec, ContinuousDataTypeSpec.newInstance - (aContinuousDataTypeSpec)); - Assert.assertNotSame( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 5.0f ), - ContinuousDataTypeSpec.newInstance( aContinuousDataTypeSpec )); - - Assert.assertEquals( "Expression<1.0", aContinuousDataTypeSpec.toString() ); - - Assert.assertEquals( GeneticDataTypes.Expression, - ContinuousDataTypeSpec.findDataType( "Exp" )); - Assert.assertEquals( GeneticDataTypes.Expression, - ContinuousDataTypeSpec.findDataType( "mrna" )); - Assert.assertEquals( GeneticDataTypes.Expression, - ContinuousDataTypeSpec.findDataType( "microRNA" )); - Assert.assertEquals( GeneticDataTypes.Methylation, - ContinuousDataTypeSpec.findDataType( "met" )); - - ContinuousDataTypeSpec aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 1.0f ); - - try { - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.fail("Should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals( "the ContinuousDataTypeSpecs must have ComparisonOps " + - "with the same direction", e.getMessage() ); - } - try { - aContinuousDataTypeSpec2.combine(aContinuousDataTypeSpec); - Assert.fail("Should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals( "the ContinuousDataTypeSpecs must have ComparisonOps " + - "with the same direction", e.getMessage() ); - } - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">"), 2.0f ); - - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 1.0f ), aContinuousDataTypeSpec ); - - // test same threshold - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">"), 2.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 2.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 2.0f ), aContinuousDataTypeSpec ); - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">"), 2.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">"), 2.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">"), 2.0f ), aContinuousDataTypeSpec ); - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 2.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">"), 2.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 2.0f ), aContinuousDataTypeSpec ); - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), -1.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), -3.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), -1.0f ), aContinuousDataTypeSpec ); - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), -1.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 2.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 2.0f ), aContinuousDataTypeSpec ); - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), 0.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 0.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), 0.0f ), aContinuousDataTypeSpec ); - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 0.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), 0.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<="), 0.0f ), aContinuousDataTypeSpec ); - - aContinuousDataTypeSpec = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 0.0f ); - aContinuousDataTypeSpec2 = - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 0.0f ); - aContinuousDataTypeSpec.combine(aContinuousDataTypeSpec2); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 0.0f ), aContinuousDataTypeSpec ); - - Assert.assertEquals( null, ContinuousDataTypeSpec.continuousDataTypeSpecGenerator( - "foo", "bla", "xxx" ) ); - Assert.assertEquals( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 0.3f ), - ContinuousDataTypeSpec.continuousDataTypeSpecGenerator( "Exp", "<", "0.3" ) ); - Assert.assertEquals( null, ContinuousDataTypeSpec.continuousDataTypeSpecGenerator - ("foo", "<", "0" ) ); - Assert.assertEquals( null, ContinuousDataTypeSpec.continuousDataTypeSpecGenerator - ("Exp", "<<", "0" ) ); - Assert.assertEquals( null, ContinuousDataTypeSpec.continuousDataTypeSpecGenerator - ("Exp", "<", "x" ) ); - - } - - @Test - public void testDiscreteDataTypeSetSpec() { - findDiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, "Copy" ); - findDiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, "CNA" ); - findDiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, "cna" ); - findDiscreteDataTypeSetSpec( GeneticDataTypes.Mutation, "mu" ); - - DiscreteDataTypeSetSpec aDiscreteDataTypeSetSpec = - new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained ); - Assert.assertEquals( "Gained ", - aDiscreteDataTypeSetSpec.toString() ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Gained ) ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.equals( aDiscreteDataTypeSetSpec )); - Assert.assertTrue( aDiscreteDataTypeSetSpec.equals( - new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained ) )); - Assert.assertTrue( aDiscreteDataTypeSetSpec.equals( new DiscreteDataTypeSetSpec - ( "CNA", 1 ) )); - - aDiscreteDataTypeSetSpec = - new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained, GeneticTypeLevel.Amplified ); - Assert.assertEquals( "Gained Amplified ", - aDiscreteDataTypeSetSpec.toString() ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Gained ) ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Amplified ) ); - Assert.assertFalse( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Diploid ) ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.equals( aDiscreteDataTypeSetSpec )); - Assert.assertTrue( aDiscreteDataTypeSetSpec.equals( - new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained, GeneticTypeLevel.Amplified ) )); - - Assert.assertEquals( aDiscreteDataTypeSetSpec, - DiscreteDataTypeSetSpec.newInstance(aDiscreteDataTypeSetSpec) ); - Assert.assertEquals( null, null, - DiscreteDataTypeSetSpec.newInstance( null ) ); - - aDiscreteDataTypeSetSpec.addLevel( GeneticTypeLevel.Amplified ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Amplified ) ); - aDiscreteDataTypeSetSpec.addLevel( GeneticTypeLevel.Diploid ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Diploid ) ); - - aDiscreteDataTypeSetSpec.combine( new DiscreteDataTypeSetSpec - (GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.HemizygouslyDeleted, - GeneticTypeLevel.HemizygouslyDeleted, GeneticTypeLevel.Diploid )); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Amplified ) ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Gained ) ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy( GeneticTypeLevel.Diploid ) ); - Assert.assertTrue( aDiscreteDataTypeSetSpec.satisfy - ( GeneticTypeLevel.HemizygouslyDeleted ) ); - Assert.assertFalse( aDiscreteDataTypeSetSpec.satisfy - ( GeneticTypeLevel.HomozygouslyDeleted ) ); - - try { - new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Mutated ); - Assert.fail("Should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals( "Mutated is not a level for CopyNumberAlteration", e.getMessage() ); - } - - try { - new DiscreteDataTypeSetSpec( "CNA", 10 ); - Assert.fail("Should throw IllegalArgumentException"); - } catch (IllegalArgumentException e) { - Assert.assertEquals( "10 is invalid code for levels in CopyNumberAlteration", - e.getMessage() ); - } - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelName( null ) ); - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelName( "foo" )); - Assert.assertEquals( new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained ), - DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelName( "Gain") ); - Assert.assertEquals( new DiscreteDataTypeSetSpec( GeneticDataTypes.Mutation, - GeneticTypeLevel.Mutated ), - DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelName( "Mut") ); - - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode - ( null, null ) ); - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode - ( null, "2" ) ); - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode - ( "JUNK", "2" ) ); - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode - ( "JUNK", "CRAP" ) ); - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode - ( "CNA", null ) ); - Assert.assertEquals( null, DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode - ( "CNA", "XX" ) ); - Assert.assertEquals( new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Amplified ), - DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelCode( "CNA", "2" ) ); - } - - private void findDiscreteDataTypeSetSpec( GeneticDataTypes expectedGeneticDataType, - String name) { - Assert.assertEquals( expectedGeneticDataType, DiscreteDataTypeSetSpec.findDataType(name)); - } - - @Test - public void testDiscreteDataTypeSpec() { - DiscreteDataTypeSpec aDiscreteDataTypeSpec = - new DiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode("<"), GeneticTypeLevel.Gained ); - Assert.assertTrue( aDiscreteDataTypeSpec.satisfy( GeneticTypeLevel.Diploid ) ); - Assert.assertFalse( aDiscreteDataTypeSpec.satisfy(GeneticTypeLevel.Gained) ); - Assert.assertTrue( aDiscreteDataTypeSpec.equals( aDiscreteDataTypeSpec ) ); - Assert.assertFalse( aDiscreteDataTypeSpec.equals( Float.valueOf(0.3f) ) ); - Assert.assertTrue( aDiscreteDataTypeSpec.equals( - new DiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode("<"), GeneticTypeLevel.Gained ) ) ); - //System.out.println( aDiscreteDataTypeSpec.hashCode() ); - Assert.assertEquals( "CopyNumberAlteration="), GeneticTypeLevel.Diploid ); - - Assert.assertTrue( aDiscreteDataTypeSpec.satisfy(GeneticTypeLevel.Amplified)); - Assert.assertFalse( aDiscreteDataTypeSpec.satisfy(GeneticTypeLevel.Normal)); - - satisfiedDiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode("<"), GeneticTypeLevel.Gained, GeneticTypeLevel.Diploid ); - satisfiedDiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode("<="), GeneticTypeLevel.Gained, GeneticTypeLevel.Diploid ); - satisfiedDiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode("<="), GeneticTypeLevel.Gained, GeneticTypeLevel.Gained ); - satisfiedDiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode(">="), GeneticTypeLevel.Gained, GeneticTypeLevel.Gained ); - satisfiedDiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode(">"), GeneticTypeLevel.Gained, GeneticTypeLevel.Amplified); - - findDiscreteDataType( GeneticDataTypes.CopyNumberAlteration, "Copy" ); - findDiscreteDataType( GeneticDataTypes.CopyNumberAlteration, "CNA" ); - findDiscreteDataType( GeneticDataTypes.CopyNumberAlteration, "cna" ); - findDiscreteDataType( GeneticDataTypes.Mutation, "mu" ); - - Assert.assertEquals( null, DiscreteDataTypeSpec.discreteDataTypeSpecGenerator - (null, null, null) ); - Assert.assertEquals( null, DiscreteDataTypeSpec.discreteDataTypeSpecGenerator - (null, null, "foo") ); - Assert.assertEquals( null, DiscreteDataTypeSpec.discreteDataTypeSpecGenerator - (null, "xx", null) ); - Assert.assertEquals( null, DiscreteDataTypeSpec.discreteDataTypeSpecGenerator - ("asd", null, null) ); - Assert.assertEquals( new DiscreteDataTypeSpec( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode("<"), GeneticTypeLevel.Gained ), - DiscreteDataTypeSpec.discreteDataTypeSpecGenerator( "CNA", "<", "Gai") ); -// Assert.assertEquals( new DiscreteDataTypeSpec( GeneticDataTypes.Mutation, -// ComparisonOp.convertCode("<"), GeneticTypeLevel.Mutated ), -// DiscreteDataTypeSpec.discreteDataTypeSpecGenerator( "Mutation", "<", "Mutated") ); - } - - @Test - public void testGeneSet() { - - GeneSet aGeneSet = new GeneSet(); - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec = new OncoPrintGeneDisplaySpec(); - GeneWithSpec aGeneWithSpec = GeneWithSpec.geneWithSpecGenerator("foo", - theResultFullDataTypeSpec, null ); - aGeneSet.addGeneWithSpec(aGeneWithSpec); - Assert.assertEquals( GeneWithSpec.geneWithSpecGenerator("foo", - theResultFullDataTypeSpec, null ), - aGeneSet.getGene() ); - aGeneSet.addGeneWithSpec(aGeneWithSpec); - Assert.assertEquals( null, aGeneSet.getGene() ); - aGeneSet.addGeneWithSpec( GeneWithSpec.geneWithSpecGenerator("foo", - theResultFullDataTypeSpec, null ) ); - - Assert.assertEquals( aGeneWithSpec, aGeneSet.getGeneWithSpec("foo") ); - Assert.assertEquals( aGeneWithSpec, aGeneSet.getGeneWithSpec("FOO") ); - Assert.assertEquals( null, aGeneSet.getGeneWithSpec("none") ); - - GeneSet anotherGeneSet = new GeneSet( "test" ); - - Assert.assertTrue( aGeneSet.equals(aGeneSet) ); - Assert.assertFalse( aGeneSet.equals(null) ); - Assert.assertFalse( aGeneSet.equals( Float.valueOf(1) ) ); - Assert.assertFalse( aGeneSet.equals( anotherGeneSet ) ); - - anotherGeneSet = new GeneSet( "foo" ); - anotherGeneSet.addGeneWithSpec(aGeneWithSpec); - anotherGeneSet.addGeneWithSpec(aGeneWithSpec); - anotherGeneSet.addGeneWithSpec(aGeneWithSpec); -// TODO: FIX: Assert.assertTrue( aGeneSet.equals( anotherGeneSet ) ); - } - - private void satisfiedDiscreteDataTypeSpec( GeneticDataTypes theGeneticDataType, - ComparisonOp comparisonOp, Object threshold, Object satisfied ) { - DiscreteDataTypeSpec aDiscreteDataTypeSpec = - new DiscreteDataTypeSpec( theGeneticDataType, comparisonOp, threshold ); - Assert.assertTrue( aDiscreteDataTypeSpec.satisfy( (GeneticTypeLevel) satisfied ) ); - - // take 'opposite' comparisonOp, and try Assert.assertFalse - DiscreteDataTypeSpec oppositeDiscreteDataTypeSpec = - new DiscreteDataTypeSpec( theGeneticDataType, comparisonOp.oppositeComparisonOp(), - threshold ); - Assert.assertFalse( oppositeDiscreteDataTypeSpec.satisfy( (GeneticTypeLevel) satisfied ) ); - } - - private void findDiscreteDataType( GeneticDataTypes expectedGeneticDataType, String name) { - Assert.assertEquals( expectedGeneticDataType, DiscreteDataTypeSpec.findDataType(name)); - } - - @Test - public void testOncoPrintGeneDisplaySpec() { - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec = new OncoPrintGeneDisplaySpec(); - for( GeneticDataTypes aGeneticDataType : GeneticDataTypes.values()){ - Assert.assertFalse( theResultFullDataTypeSpec.satisfy( aGeneticDataType )); - } - for( GeneticDataTypes aGeneticDataType : GeneticDataTypes.values()){ - Assert.assertFalse( theResultFullDataTypeSpec.satisfy( aGeneticDataType )); - - switch( aGeneticDataType.getTheDataTypeCategory()){ - case Continuous: - Assert.assertFalse( theResultFullDataTypeSpec.satisfy( aGeneticDataType, 0.0f )); - break; - case Discrete: - for( GeneticTypeLevel aGeneticTypeLevel: GeneticTypeLevel.values()){ - if( aGeneticTypeLevel.getTheGeneticDataType().getTheDataTypeCategory() - == DataTypeCategory.Discrete ){ - Assert.assertFalse( theResultFullDataTypeSpec.satisfy( aGeneticDataType, - aGeneticTypeLevel )); - } - } - break; - } - } - - // test the default - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setDefault( 1.0, 1.0 ); - - // Expression alteration definition is <= and >=, as per docs - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, -1.0f ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 1.0f ) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 0.0f ) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, -0.9f ) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 0.9f ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.CopyNumberAlteration ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HomozygouslyDeleted ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Amplified ) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Gained) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HemizygouslyDeleted ) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Diploid ) ); - - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Mutation, GeneticTypeLevel.Mutated) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Mutation, GeneticTypeLevel.Normal ) ); - - } - - /** - * combine some data type specs: - * The net result: - * HomozygouslyDeleted Gained Amplified Expression<2.0 Expression>=3.0 Methylation ; - * @return - */ - public static OncoPrintGeneDisplaySpec createTestOncoPrintGeneDisplaySpec(){ - ParsedFullDataTypeSpec aParsedFullDataTypeSpec = new ParsedFullDataTypeSpec( ); - - aParsedFullDataTypeSpec.addSpec( new ConcreteDataTypeSpec( GeneticDataTypes.Methylation )); - aParsedFullDataTypeSpec.addSpec( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 1.0f ) ); - aParsedFullDataTypeSpec.addSpec( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 2.0f ) ); - aParsedFullDataTypeSpec.addSpec( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 3.0f ) ); - aParsedFullDataTypeSpec.addSpec( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 2.0f ) ); - aParsedFullDataTypeSpec.addSpec( new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 3.4f ) ); - - aParsedFullDataTypeSpec.addSpec( new DiscreteDataTypeSetSpec - ( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained) ); - aParsedFullDataTypeSpec.addSpec( new DiscreteDataTypeSetSpec - ( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Amplified) ); - aParsedFullDataTypeSpec.addSpec( new DiscreteDataTypeSetSpec - ( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained) ); - aParsedFullDataTypeSpec.addSpec( new DiscreteDataTypeSpec - ( GeneticDataTypes.CopyNumberAlteration, - ComparisonOp.convertCode("<"), GeneticTypeLevel.HemizygouslyDeleted ) ); - return aParsedFullDataTypeSpec.cleanUpInput(); - } - - @Test - public void testParsedFullDataTypeSpec() { - // make ResultFullDataTypeSpec that accepts nothing - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = - (new ParsedFullDataTypeSpec( )).cleanUpInput(); - for( GeneticDataTypes aGeneticDataType : GeneticDataTypes.values()){ - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy( aGeneticDataType )); - } - - theOncoPrintGeneDisplaySpec = createTestOncoPrintGeneDisplaySpec(); - //System.out.println( theResultFullDataTypeSpec ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy(GeneticDataTypes.Methylation, 2f )); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - (GeneticDataTypes.Methylation, -33f )); - - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy(GeneticDataTypes.Expression, -3f )); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - (GeneticDataTypes.Expression, 1.99f )); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy(GeneticDataTypes.Expression, 2f )); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy(GeneticDataTypes.Expression, 3f )); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy(GeneticDataTypes.Expression, 33f )); - - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - (GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Amplified )); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - (GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Gained )); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - (GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.Diploid )); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - (GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HemizygouslyDeleted )); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - (GeneticDataTypes.CopyNumberAlteration, GeneticTypeLevel.HomozygouslyDeleted )); - - // all methylations - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Methylation, -3.0f, Direction.higher ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Methylation, -3.0f, Direction.lower ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Methylation, 3.0f, Direction.higher ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Methylation, 3.0f, Direction.lower ) ); - - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 3f, Direction.higher ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 3.5f, Direction.higher ) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 2.5f, Direction.higher ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, -1.0f, Direction.lower ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 1.0f, Direction.lower ) ); - Assert.assertTrue( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 1.99f, Direction.lower) ); - Assert.assertFalse( theOncoPrintGeneDisplaySpec.satisfy - ( GeneticDataTypes.Expression, 2.0f, Direction.lower ) ); - } - - @Test - public void testResultDataTypeSpec() { - ResultDataTypeSpec aResultDataTypeSpec = new ResultDataTypeSpec - ( GeneticDataTypes.Expression ); - Assert.assertTrue( aResultDataTypeSpec.equals - ( ResultDataTypeSpec.newInstance(aResultDataTypeSpec) ) ); - aResultDataTypeSpec.setCombinedLesserContinuousDataTypeSpec( - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode("<"), 1.0f ) ); - Assert.assertTrue( aResultDataTypeSpec.equals - ( ResultDataTypeSpec.newInstance(aResultDataTypeSpec) ) ); - aResultDataTypeSpec.setCombinedGreaterContinuousDataTypeSpec( - new ContinuousDataTypeSpec( GeneticDataTypes.Expression, - ComparisonOp.convertCode(">="), 3.0f ) ); - Assert.assertTrue( aResultDataTypeSpec.equals - ( ResultDataTypeSpec.newInstance(aResultDataTypeSpec) ) ); - aResultDataTypeSpec.setAcceptAll(true); - Assert.assertTrue( aResultDataTypeSpec.equals - ( ResultDataTypeSpec.newInstance(aResultDataTypeSpec) ) ); - - Assert.assertFalse( aResultDataTypeSpec.equals - ( new ResultDataTypeSpec( GeneticDataTypes.Expression ) ) ); - Assert.assertEquals( null, ResultDataTypeSpec.newInstance( null ) ); - - } - - @Test - public void testGeneWithSpec() { - - Assert.assertEquals( null, GeneWithSpec.geneWithSpecGenerator(null, null, null )); - Assert.assertEquals( null, GeneWithSpec.geneWithSpecGenerator("name", null, null )); - OncoPrintGeneDisplaySpec theResultFullDataTypeSpec = new OncoPrintGeneDisplaySpec(); - Assert.assertEquals( null, GeneWithSpec.geneWithSpecGenerator - (null, theResultFullDataTypeSpec, null )); - theResultFullDataTypeSpec.setDefault( 2.0, 1.0 ); - GeneWithSpec aGeneWithSpec = new GeneWithSpec( "name", theResultFullDataTypeSpec ); - Assert.assertEquals( aGeneWithSpec.toString(), - GeneWithSpec.geneWithSpecGenerator("name", - theResultFullDataTypeSpec, null ).toString()); - Assert.assertEquals( aGeneWithSpec.toString(), - GeneWithSpec.geneWithSpecGenerator("name", null, - theResultFullDataTypeSpec ).toString()); - // TODO: impl equals and hashCode for GeneWithSpec AND all its components, so this works - Assert.assertTrue( aGeneWithSpec.equals( GeneWithSpec.geneWithSpecGenerator("name", - theResultFullDataTypeSpec, null ))); - Assert.assertTrue( aGeneWithSpec.equals( GeneWithSpec.geneWithSpecGenerator("name", - null, theResultFullDataTypeSpec ))); - } - - private void checkAmazin(GeneWithSpec aGeneWithSpec){ - - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy( - GeneticDataTypes.CopyNumberAlteration)); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.Mutation)); - Assert.assertTrue(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.Expression, -2.01f)); - Assert.assertFalse(aGeneWithSpec.getTheOncoPrintGeneDisplaySpec().satisfy - (GeneticDataTypes.Expression, -2.0f)); - } - - @Test - public void testUniqueEnumPrefix() { - - tryAnUniqueEnumPrefix("Meth", GeneticDataTypes.class, - GeneticDataTypes.Methylation); - tryAnUniqueEnumPrefix("E", GeneticDataTypes.class, - GeneticDataTypes.Expression); - tryAnUniqueEnumPrefix("Mu", GeneticDataTypes.class, - GeneticDataTypes.Mutation); - tryAnUniqueEnumPrefix("C", GeneticDataTypes.class, - GeneticDataTypes.CopyNumberAlteration); - } - - private void tryAnUniqueEnumPrefix(String testInput, Class enumClass, - Object enumConstant) { - - try { - Assert.assertEquals(enumConstant, - UniqueEnumPrefix.findUniqueEnumMatchingPrefix(enumClass, testInput)); - } catch (IllegalArgumentException e) { - System.out - .println("testUniqueEnumPrefix: IllegalArgumentException: " - + e.getMessage()); - } - } - - @Test - public void testOncoPrintSpecification() { - - OncoPrintSpecification aOncoPrintSpecification = new OncoPrintSpecification(); - - String[] genes = { "G1", "GENE2", "LAST" }; - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setDefault( 1.5f, 1.0f ); - GeneSet aGeneSet = new GeneSet( ); - for( String g : genes){ - aGeneSet.addGeneWithSpec( new GeneWithSpec( g, theOncoPrintGeneDisplaySpec ) ); - } - aOncoPrintSpecification.add(aGeneSet); - Assert.assertEquals( null, aOncoPrintSpecification.getGeneWithSpec( "geneName" ) ); - Assert.assertEquals( new ArrayList( Arrays.asList( genes ) ), - aOncoPrintSpecification.listOfGenes() ); - - // TODO: change to .equals, when implemented - Assert.assertEquals( new GeneWithSpec( "GENE2", theOncoPrintGeneDisplaySpec ).toString(), - aOncoPrintSpecification.getGeneWithSpec( "gene2" ).toString() ); - - aOncoPrintSpecification.add(aGeneSet); - ArrayList t = new ArrayList( Arrays.asList( genes ) ); - t.addAll( new ArrayList( Arrays.asList( genes ) ) ); - Assert.assertEquals( t, aOncoPrintSpecification.listOfGenes() ); - - Assert.assertEquals( null, aOncoPrintSpecification.getGeneWithSpec( "GENENAME" ) ); - // TODO: change to .equals, when implemented - Assert.assertEquals( new GeneWithSpec( "GENE2", theOncoPrintGeneDisplaySpec ).toString(), - aOncoPrintSpecification.getGeneWithSpec( "gene2" ).toString() ); - - } - - @Test - public void testGetUnionOfPossibleLevels() { - - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - OncoPrintSpecification anOncoPrintSpecification = new OncoPrintSpecification( ); - // TODO: change to .equals, when implemented - Assert.assertEquals( theOncoPrintGeneDisplaySpec.toString(), - anOncoPrintSpecification.getUnionOfPossibleLevels().toString() ); - - String[] genes = { "G1", "LAST" }; - theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setDefault( 2.5, 1.0 ); - anOncoPrintSpecification = new OncoPrintSpecification( genes, theOncoPrintGeneDisplaySpec ); - // TODO: change to .equals, when implemented - Assert.assertEquals( theOncoPrintGeneDisplaySpec.toString(), - anOncoPrintSpecification.getUnionOfPossibleLevels().toString() ); - - // HomozygouslyDeleted Gained Amplified Expression<2.0 Expression>=3.0 Methylation ; - anOncoPrintSpecification = new OncoPrintSpecification( genes, - createTestOncoPrintGeneDisplaySpec() ); - Assert.assertEquals( createTestOncoPrintGeneDisplaySpec().toString(), - anOncoPrintSpecification.getUnionOfPossibleLevels().toString() ); - - ResultDataTypeSpec theResultDataTypeSpec = new ResultDataTypeSpec - ( GeneticDataTypes.Expression ); - theResultDataTypeSpec.setCombinedGreaterContinuousDataTypeSpec( - ContinuousDataTypeSpec.continuousDataTypeSpecGenerator - ( "Expression", "<=", "2.5" ) ); - theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setResultDataTypeSpec( GeneticDataTypes.Expression, - theResultDataTypeSpec ); - GeneSet aGeneSet = new GeneSet( ); - aGeneSet.addGeneWithSpec( new GeneWithSpec( "foo", theOncoPrintGeneDisplaySpec ) ); - anOncoPrintSpecification.add(aGeneSet); - - // a hack; should create the right OncoPrintGeneDisplaySpec for the expected - Assert.assertEquals( "HomozygouslyDeleted Gained Amplified Expression<=2.5 " + - "Expression>=3.0 Methylation ;", - anOncoPrintSpecification.getUnionOfPossibleLevels().toString() ); - - theResultDataTypeSpec = new ResultDataTypeSpec( GeneticDataTypes.Mutation ); - theResultDataTypeSpec.setTheDiscreteDataTypeSetSpec( - DiscreteDataTypeSetSpec.discreteDataTypeSetSpecGeneratorByLevelName( "Mutated") ); - theOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - theOncoPrintGeneDisplaySpec.setResultDataTypeSpec( GeneticDataTypes.Mutation, - theResultDataTypeSpec ); - aGeneSet = new GeneSet( ); - aGeneSet.addGeneWithSpec( new GeneWithSpec( "bar", theOncoPrintGeneDisplaySpec ) ); - anOncoPrintSpecification.add(aGeneSet); - // a hack; should create the right OncoPrintGeneDisplaySpec for the expected - Assert.assertEquals( "HomozygouslyDeleted Gained Amplified Expression<=2.5 " + - "Expression>=3.0 Mutated Methylation ;", - anOncoPrintSpecification.getUnionOfPossibleLevels().toString() ); - - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/pancancer/LargeTestSetGenerator.java b/core/src/test/java/org/mskcc/cbio/portal/pancancer/LargeTestSetGenerator.java deleted file mode 100644 index 9ab181cd970..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/pancancer/LargeTestSetGenerator.java +++ /dev/null @@ -1,437 +0,0 @@ -package org.mskcc.cbio.portal.pancancer; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.FileWriter; -import java.io.IOException; -import java.util.ArrayList; -import java.util.Collections; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - - -/** - * This class is not a Test class, but rather a class that can be used - * to generate a large test set for load/performance testing purposes. - * - * @author plukasse - * - */ -public class LargeTestSetGenerator { - - - public static void main(String[] args) throws IOException { - int size = Integer.parseInt(args[0]); - String outputDir = args[1]; - String studyId = args[2]; - String dataCNAfile = args[3]; - String dataMutationsfile = args[4]; - int nrCancerTypes = Integer.parseInt(args[5]); - int nrSubTypes = Integer.parseInt(args[6]); - - //0- make output dir: - if (!new File(outputDir).exists() && !new File(outputDir).mkdirs()) - throw new RuntimeException("Could not make output dir : " + outputDir); - - //1- generate the desired number of samples to be generated in this test set - System.out.println("Generating sample list for " + size + " samples...."); - List sampleList = getSampleList(size); - - // Generate data_CNA.txt : - System.out.println("Generating CNA data...."); - generateDataCNA(dataCNAfile, outputDir, sampleList); - - System.out.println("Generating CNA SEG data...."); - generateDataCNA_SEG(dataCNAfile + ".seg", outputDir, sampleList); - - System.out.println("Generating cases_all.txt...."); - generateCasesAll(outputDir, sampleList, studyId); - - System.out.println("Generating MUTATION data...."); - generateMutationData(dataMutationsfile, outputDir, sampleList); - - System.out.println("Generating data_clinical.txt...."); - //Generate clinical data: - generateClinicalData(outputDir, sampleList, nrCancerTypes, nrSubTypes); - - System.out.println("Generating cancer_type.txt...."); - generateCancerType(outputDir, studyId); - - System.out.println("Generating meta_study.txt...."); - generateMetaStudy(outputDir, studyId); - - System.out.println("Generating meta_clinical.txt...."); - generateMetaClinical(outputDir, studyId); - - System.out.println("Generating meta_mutations_extended.txt...."); - generateMetaMutExt(outputDir, studyId); - - System.out.println("Generating meta_CNA.txt...."); - generateMetaCna(outputDir, studyId); - - System.out.println("Generating meta_CNA_seg.txt...."); - generateMetaCnaSEG(outputDir, studyId); - - - - - System.out.println("Done. You will find the files in " + outputDir); - } - - private static void generateCancerType(String outputDir, String studyId) throws IOException { - FileWriter resultFile = new FileWriter(outputDir + "/cancer_type.txt"); - resultFile.write("pan_cancer " + studyId+ " PANCAN Yellow Breast"); - resultFile.close(); - } - - private static void generateMetaStudy(String outputDir, String studyId) throws IOException { - FileWriter resultFile = new FileWriter(outputDir + "/meta_study.txt"); - resultFile.write("type_of_cancer: pan_cancer\n"+ - "cancer_study_identifier: " + studyId+ "\n"+ - "name: " + studyId+ "\n"+ - "description: " + studyId+ ".\n"+ - "citation: The Hyve, Pieter Lukasse, ...\n"+ - "pmid: 23000897,26451490\n"+ - "groups: PUBLIC;GDAC;SU2C-PI3K\n"); - resultFile.close(); - } - - private static void generateMetaClinical(String outputDir, String studyId) throws IOException { - FileWriter resultFile = new FileWriter(outputDir + "/meta_clinical.txt"); - resultFile.write("cancer_study_identifier: " + studyId+ "\n"+ - "genetic_alteration_type: CLINICAL\n"+ - "datatype: ;:FREE-FORM\n"+ - "stable_id: " + studyId+ "_clinical\n"+ - "show_profile_in_analysis_tab: false\n"+ - "profile_description: Sample clinical data for this study. \n"+ - "profile_name: Sample clinical data for " + studyId+ "."); - resultFile.close(); - } - - private static void generateMetaMutExt(String outputDir, String studyId) throws IOException { - FileWriter resultFile = new FileWriter(outputDir + "/meta_mutations_extended.txt"); - resultFile.write("cancer_study_identifier: " + studyId+ "\n"+ - "genetic_alteration_type: MUTATION_EXTENDED\n"+ - "datatype: MAF\n"+ - "stable_id: " + studyId+ "_mutations\n"+ - "show_profile_in_analysis_tab: true\n"+ - "profile_description: Mutation data from whole exome sequencing.\n"+ - "profile_name: Mutations " + studyId); - resultFile.close(); - } - - private static void generateMetaCna(String outputDir, String studyId) throws IOException { - FileWriter resultFile = new FileWriter(outputDir + "/meta_CNA.txt"); - resultFile.write("cancer_study_identifier: " + studyId+ "\n"+ - "genetic_alteration_type: COPY_NUMBER_ALTERATION\n"+ - "datatype: DISCRETE\n"+ - "stable_id: " + studyId+ "_gistic\n"+ - "show_profile_in_analysis_tab: true\n"+ - "profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.\n"+ - "profile_name: Putative copy-number alterations from GISTIC " + studyId ); - - resultFile.close(); - } - - private static void generateMetaCnaSEG(String outputDir, String studyId) throws IOException { - FileWriter resultFile = new FileWriter(outputDir + "/meta_CNA_seg.txt"); - resultFile.write("cancer_study_identifier: " + studyId+ "\n"+ - "genetic_alteration_type: SEGMENT\n"+ - "datatype: SEGMENT\n"+ - "stable_id: " + studyId+ "_segment\n"+ - "show_profile_in_analysis_tab: false\n"+ - "profile_description: Segment data for the study " + studyId+ "\n"+ - "profile_name: Segment data values " + studyId+ "\n"+ - "reference_genome_id: hg19\n"+ - "data_filename: data_CNA_txt.seg\n"+ - "description: Segment data for the study " + studyId ); - resultFile.close(); - } - - private static void generateClinicalData(String outputDir, List sampleList, int nrCancerTypes, int nrSubTypes) throws IOException { - FileWriter resultFile = new FileWriter(outputDir + "/data_clinical.txt"); - //write header, with CANCER_TYPE, CANCER_TYPE_DETAILED in pos 3 and 4: - if (nrSubTypes > 0) { - //Display Name: The display name for each clinical attribute. - resultFile.write("#Patient Identifier\t#Sample Identifier\tSubtype\tCancer Type\tCancer Type Detailed\tOverall Survival Status\tOverall Survival (Months)\tDisease Free Status\tDisease Free (Months)\n"); - //Description: Long(er) description of each clinical attribute. - resultFile.write("#Patient identifier\t#Sample identifier\tSubtype description\tCancer Type\tCancer Type Detailed\tOverall survival status\tOverall survival in months since diagnosis\tDisease free status\tDisease free in months since treatment\n"); - //Datatype: The datatype of each clinical attribute (must be one of: STRING, NUMBER, BOOLEAN). - resultFile.write("#STRING\t#STRING\tSTRING\tSTRING\tSTRING\tSTRING\tNUMBER\tSTRING\tNUMBER\n"); - //Attribute Type: The type of each clinical attribute, e.g. should this attribute be attached to a PATIENT or SAMPLE. - resultFile.write("#PATIENT\tSAMPLE\tSAMPLE\tSAMPLE\tSAMPLE\tPATIENT\tPATIENT\tPATIENT\tPATIENT\n"); - //Priority: A number which indicates the importance of each attribute. In the future, higher priority attributes will appear in more prominent places than lower priority ones on relevant pages. A lower number indicates a higher priority. - resultFile.write("#1\t1\t1\t\t\t1\t1\t1\t1\n"); - resultFile.write("PATIENT_ID\tSAMPLE_ID\tSUBTYPE\tCANCER_TYPE\tCANCER_TYPE_DETAILED\tOS_STATUS\tOS_MONTHS\tDFS_STATUS\tDFS_MONTHS\n"); - } - else { - //shorter, without CANCER_TYPE_DETAILED - resultFile.write("#Patient Identifier\t#Sample Identifier\tSubtype\tCancer Type\tOverall Survival Status\tOverall Survival (Months)\tDisease Free Status\tDisease Free (Months)\n"); - resultFile.write("#Patient identifier\t#Sample identifier\tSubtype description\tCancer Type\tOverall survival status\tOverall survival in months since diagnosis\tDisease free status\tDisease free in months since treatment\n"); - resultFile.write("#STRING\t#STRING\tSTRING\tSTRING\tSTRING\tNUMBER\tSTRING\tNUMBER\n"); - resultFile.write("#PATIENT\tSAMPLE\tSAMPLE\tSAMPLE\tPATIENT\tPATIENT\tPATIENT\tPATIENT\n"); - resultFile.write("#1\t1\t1\t\t\t1\t1\t1\n"); - resultFile.write("PATIENT_ID\tSAMPLE_ID\tSUBTYPE\tCANCER_TYPE\tOS_STATUS\tOS_MONTHS\tDFS_STATUS\tDFS_MONTHS\n"); - } - - //iterate over sampleList, write the lines: - for (String sample: sampleList) { - String patientId = sample.split("-SAMPLE")[0]; //see getSampleList method - resultFile.write(patientId + "\t"); - resultFile.write(sample + "\t"); - - String [] subtype = {"Luminal A", "basal-like", "Luminal B", "Her2 enriched"}; - resultFile.write(subtype[random(0,3)] + "\t"); - - int cancerType = random(1,nrCancerTypes); - resultFile.write("Cancer_type" + cancerType + "\t"); - - if (nrSubTypes > 0) { - int cancerTypeDetailed = random(1,nrSubTypes); - resultFile.write("Cancer_type" + cancerType + "_Sub" +cancerTypeDetailed + "\t"); - } - - String [] osStatus = {"1:DECEASED", "0:LIVING"}; - resultFile.write(osStatus[random(0,1)] + "\t"); - //os_months - int osMonths = random(0,300); - resultFile.write(osMonths + "\t"); - - String [] dfsStatus = {"NA","1:Recurred/Progressed","0:DiseaseFree"}; - resultFile.write(dfsStatus[random(0,2)] + "\t"); - //repeat os_months - resultFile.write(osMonths + ""); - - resultFile.write("\n"); - } - resultFile.close(); - - } - - private static int random(int start, int end) { - return (int)Math.round(Math.random()*(end-start))+start; - } - - - - private static void generateMutationData(String dataMutationsfile, String outputDir, List sampleList) throws IOException { - Map lineTemplates = new HashMap(); - - //read the dataMutationsfile and find the unique line templates based on Hugo_Symbol (1st column) - BufferedReader originalFile = new BufferedReader(new FileReader(dataMutationsfile)); - FileWriter resultFile = new FileWriter(outputDir + "/" + new File(dataMutationsfile).getName()); - //read header: - String line = originalFile.readLine(); - //write header: - resultFile.write(line + "\n"); - int pos_Tumor_Sample_Barcode = findPos(line, "Tumor_Sample_Barcode"); - int pos_Matched_Norm_Sample_Barcode = findPos(line, "Matched_Norm_Sample_Barcode"); - //read first data line: - line = originalFile.readLine(); - while ( line != null) { - String[] splitLine = line.split("\t"); - String hugoSymbol = splitLine[0]; - lineTemplates.put(hugoSymbol, line); - line = originalFile.readLine(); - } - //iterate over the samples, giving each sample a random number of mutations (from the line templates) - Object[] lines = lineTemplates.values().toArray(); - for (String sample : sampleList) { - //get a random number of lineTemplates - int numberOfMutations = random(0, lines.length); - //get the numberOfMutations random indexes: - int[] indexes = getRandomIdx(lines.length, numberOfMutations); - for (int index: indexes){ - line = (String)lines[index]; - - //replace sample code: - String[] splitLine = line.split("\t"); - splitLine[pos_Tumor_Sample_Barcode] = sample; - splitLine[pos_Matched_Norm_Sample_Barcode] = sample; - for (String field : splitLine) - resultFile.write(field + "\t"); - - resultFile.write(line + "\n"); - } - } - resultFile.close(); - originalFile.close(); - } - - - private static int findPos(String headerLine, String fieldName) { - String[] splitLine = headerLine.split("\t"); - for (int i = 0; i < splitLine.length; i++) { - String field = splitLine[i]; - if (field.equals(fieldName)) - return i; - } - throw new RuntimeException("Field [" + fieldName + "] not found in input data file"); - } - - - private static int[] getRandomIdx(int size, int nrItems) { - ArrayList list = new ArrayList(); - for (int i=0; i sampleList) throws IOException { - // Hugo_Symbol Entrez_Gene_Id sample1 sample2 .... - BufferedReader originalFile = new BufferedReader(new FileReader(dataCNAfile)); - FileWriter resultFile = new FileWriter(outputDir + "/" + new File(dataCNAfile).getName()); - //write header: - resultFile.write("Hugo_Symbol\tEntrez_Gene_Id"); - for (String sample : sampleList) - resultFile.write("\t" + sample); - resultFile.write("\n"); - - //read header/skip: - String line = originalFile.readLine(); - //read first data line: - line = originalFile.readLine(); - while ( line != null) { - //write Hugo_Symbol\tEntrez_Gene_Id: - String[] splitLine = line.split("\t"); - resultFile.write(splitLine[0] + "\t" + splitLine[1]); - //write the CNA data: - for (String sample : sampleList) - resultFile.write("\t" + random(-2,2)); - - //new line - resultFile.write("\n"); - line = originalFile.readLine(); - } - originalFile.close(); - resultFile.close(); - - - } - - - private static void generateDataCNA_SEG(String dataCNASegfile, String outputDir, List sampleList) throws IOException { - // Hugo_Symbol Entrez_Gene_Id sample1 sample2 .... - FileWriter resultFile = new FileWriter(outputDir + "/" + new File(dataCNASegfile).getName()); - //write header: - resultFile.write("Sample\tchrom\tloc.start\tloc.end\tnum.mark\tseg.mean\n"); - - //example: - //Sample chrom loc.start loc.end num.mark seg.mean - //TCGA-A1-A0SB-01 1 1737357 39975142 17096 0.009 - - - for (String sample : sampleList) { - - int nrChrom = random(10,20); //some of the chromosomes - for (int i = 1; i < nrChrom; i ++) { - double seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"13684348\t" +"13833633\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"13833728\t" +"15413875\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"15416808\t" +"16121303\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"16124160\t" +"16764830\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"16769801\t" +"18101891\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"18104300\t" +"18657376\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"18658403\t" +"25343371\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"25346379\t" +"27014651\t" +"17096\t" + seg_mean + "\n"); - - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"27021371\t" +"27182923\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"27182944\t" +"27339665\t" +"17096\t" + seg_mean + "\n"); - seg_mean = random(-200,200)/100.0; - resultFile.write(sample + "\t" + i + "\t" +"27340606\t" +"29923280\t" +"17096\t" + seg_mean + "\n"); - - //TODO the segments above cover only a small portion of the chromosomes. Ideally we base this on a table - //with chromosome size and try to cover a large portion...perhaps something to add later if really necessary for a specific test... - - } - -// TCGA-GI-A2C8-01 17 13684348 13833633 115 -1.0971 -// TCGA-GI-A2C8-01 17 13833728 15413875 1243 -0.0309 -// TCGA-GI-A2C8-01 17 15416808 16121303 185 -0.9382 -// TCGA-GI-A2C8-01 17 16124160 16764830 213 -0.2745 -// TCGA-GI-A2C8-01 17 16769801 18101891 668 0.2376 -// TCGA-GI-A2C8-01 17 18104300 18657376 41 0.4776 -// TCGA-GI-A2C8-01 17 18658403 25343371 868 -0.2243 -// TCGA-GI-A2C8-01 17 25346379 27014651 810 0.1167 - - -// TCGA-GI-A2C8-01 17 27021371 27182923 55 0.5718 -// TCGA-GI-A2C8-01 17 27182944 27339665 74 0.2509 -// TCGA-GI-A2C8-01 17 27340606 29923280 1067 -0.217 - -// TCGA-GI-A2C8-01 17 29926532 30117305 108 0.2985 -// TCGA-GI-A2C8-01 17 30117461 30347325 107 -0.2215 -// TCGA-GI-A2C8-01 17 30347502 30579182 108 0.9076 -// TCGA-GI-A2C8-01 17 30580272 30974499 163 1.5428 -// TCGA-GI-A2C8-01 17 30976522 31180523 116 -0.2454 -// TCGA-GI-A2C8-01 17 31182534 31250961 38 1.1809 -// TCGA-GI-A2C8-01 17 31259041 31284664 22 -0.1943 -// TCGA-GI-A2C8-01 17 31285744 31351121 57 1.0972 - - } - resultFile.close(); - - - } - - - - private static void generateCasesAll(String outputDir, List sampleList, String studyId) throws IOException { - - FileWriter resultFile = new FileWriter(outputDir + "/cases_all.txt"); - //write header: - - resultFile.write("cancer_study_identifier: " + studyId + "\n"); - resultFile.write("stable_id: " + studyId + "_all\n"); - resultFile.write("case_list_name: All Tumors\n"); - resultFile.write("case_list_description: All tumor samples (" + sampleList.size() + " samples)\n"); - resultFile.write("case_list_ids: "); - for (String sample : sampleList) - resultFile.write("\t" + sample); - resultFile.write("\n"); - resultFile.close(); - } - - - private static List getSampleList(int sampleSetSize) { - List result = new ArrayList(); - - int maxSampleListForPatient = 10; - //size between 1 and maxSampleListForPatient - int sizeSampleListForPatient = random(1,maxSampleListForPatient); - int countSize = 0; - int sampleId = 0; - int patientId = 1; - for (int i = 0; i < sampleSetSize; i++) { - countSize++; - if (countSize > sizeSampleListForPatient) { - countSize = 0; - //get new random size: - sizeSampleListForPatient = random(1,maxSampleListForPatient); - patientId++; - sampleId = 0; - } - sampleId++; - result.add("TEST-PAT"+patientId+"-SAMPLE"+sampleId); - } - return result; - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/pancancer/TestPanCancerStudySummaryImport.java b/core/src/test/java/org/mskcc/cbio/portal/pancancer/TestPanCancerStudySummaryImport.java deleted file mode 100755 index 014b499a54b..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/pancancer/TestPanCancerStudySummaryImport.java +++ /dev/null @@ -1,163 +0,0 @@ -package org.mskcc.cbio.portal.pancancer; - -import org.junit.After; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.model.TypeOfCancer; -import org.mskcc.cbio.portal.scripts.ImportCancerStudy; -import org.mskcc.cbio.portal.scripts.ImportClinicalData; -import org.mskcc.cbio.portal.scripts.ImportSampleList; -import org.mskcc.cbio.portal.scripts.ImportProfileData; -import org.mskcc.cbio.portal.util.*; -import org.mskcc.cbio.portal.web_api.GetSampleLists; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import java.util.ArrayList; -import java.util.List; -import java.util.Map; -import java.util.Set; - -import static org.junit.Assert.assertEquals; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestPanCancerStudySummaryImport { - - @Before - public void setUp() throws DaoException { - //clear cache to ensure this test is not affected by other tests (i.e. some tests add the same - //samples to the DB and these remain in the cache after tests are done...if tests don't implement - //teardown properly). - DaoPatient.reCache(); - DaoSample.reCache(); - DaoGeneticProfile.reCache(); - DaoGeneOptimized.getInstance().reCache(); - } - - @After - public void tearDown() { - //clear any cached data: - DaoPatient.reCache(); - DaoSample.reCache(); - DaoGeneticProfile.reCache(); - DaoGeneOptimized.getInstance().reCache(); - } - - @Test - public void testPanCancerImport() throws Exception { - ProgressMonitor.setConsoleMode(true); - - addGenes(); - - // have to do add the pan_cancer cancer type first - addCancerType("pan_cancer", "Pan-Cancer", "other", "Red", "PANCAN", "tissue"); - - // ImportCancerStudy portal-study/meta_study.txt - addCancerStudy("src/test/resources/panCancerStudySummary/meta_study.txt"); - - //ImportClinicalData portal-study/data_clinical.txt multi_cancer_study - addClinicalData("src/test/resources/panCancerStudySummary/meta_clinical.txt", - "src/test/resources/panCancerStudySummary/data_clinical.txt"); - - // ImportProfileData --meta portal-study/meta_CNA.txt --loadMode bulkload --data portal-study/data_CNA.txt - addProfileData("src/test/resources/panCancerStudySummary/meta_CNA.txt", "src/test/resources/panCancerStudySummary/data_CNA.txt"); - - // ImportProfileData --meta portal-study/meta_mutations_extended.txt --loadMode bulkload --data portal-study/data_mutations_extended.txt - addProfileData("src/test/resources/panCancerStudySummary/meta_mutations_extended.txt", "src/test/resources/panCancerStudySummary/data_mutations_extended.txt"); - - // ImportSampleList portal-study/case_lists/cases_all.txt - // we're passing a single file, not the directory - addSampleLists("src/test/resources/panCancerStudySummary/cases_all.txt"); - - // test getCancerTypeInfo - runChecksForGetCancerTypeInfo(); - - // TODO : add more checks for profile data retrieved via pancancer queries (if any) - } - - private void addGenes() throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - //genes used in test data: - daoGene.addGene(new CanonicalGene(999929974,"TESTA1CF")); - daoGene.addGene(new CanonicalGene(999999992,"TESTA2M")); - daoGene.addGene(new CanonicalGene(999144568,"TESTA2ML1")); - daoGene.addGene(new CanonicalGene(999344752,"TESTAADACL2")); - daoGene.addGene(new CanonicalGene(999922848,"TESTAAK1")); - daoGene.addGene(new CanonicalGene(999132949,"TESTAASDH")); - daoGene.addGene(new CanonicalGene(999910157,"TESTAASS")); - daoGene.addGene(new CanonicalGene(999999919,"TESTABCA1")); - daoGene.addGene(new CanonicalGene(999910058,"TESTABCB6")); - daoGene.addGene(new CanonicalGene(999955289,"TESTACOXL")); - daoGene.addGene(new CanonicalGene(999910880,"TESTACTL7B")); - } - - private void addCancerType(String cancerID, String name, String keyword, String color, String shortName, String parentID) throws Exception{ - TypeOfCancer aTypeOfCancer = new TypeOfCancer(); - aTypeOfCancer.setTypeOfCancerId(cancerID); - aTypeOfCancer.setName(name); - aTypeOfCancer.setDedicatedColor(color); - aTypeOfCancer.setShortName(shortName); - aTypeOfCancer.setParentTypeOfCancerId(parentID); - DaoTypeOfCancer.addTypeOfCancer(aTypeOfCancer); - } - - private void addCancerStudy(String fileName) throws Exception{ - ImportCancerStudy runner = new ImportCancerStudy(new String[]{fileName}); - runner.run(); - } - - private void addProfileData(String descriptorFileName, String dataFileName) throws Exception{ - try { - ImportProfileData runner = new ImportProfileData(new String[]{"--meta", descriptorFileName, "--loadMode", "bulkload", "--data", dataFileName}); - runner.run(); - } - catch (Throwable e) { - //useful info for when this fails: - ConsoleUtil.showMessages(); - throw e; - } - } - - private void addSampleLists(String fileName) throws Exception{ - ImportSampleList runner = new ImportSampleList(new String[]{fileName}); - runner.run(); - } - - private void addClinicalData(String descriptorFileName, String dataFileName) throws Exception{ - ImportClinicalData runner = new ImportClinicalData(new String[]{"--meta", descriptorFileName, "--loadMode", "bulkload", "--data", dataFileName}); - runner.run(); - } - - public void runChecksForGetCancerTypeInfo() throws Exception{ - String studyName="multi_cancer_study"; - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyName); - List samples = DaoSample.getSamplesByCancerStudy(study.getInternalId()); - List sampleList = new ArrayList<>(); - for(Sample sample:samples){ - sampleList.add(sample.getStableId()); - } - - // retrieve the cancerTypeInfoMap for the study - // this should contain: - // 'CANCER_TYPE' - 'cns', 'cervix' - // 'CANCER_TYPE_DETAILED' - 'byst', 'bimt', 'cead', 'cene', 'cacc' - Map> cancerTypeInfoMap = DaoClinicalData.getCancerTypeInfoBySamples(sampleList); - assertEquals(cancerTypeInfoMap.keySet().size(), 2); - assertEquals(cancerTypeInfoMap.containsKey(ClinicalAttribute.CANCER_TYPE), true); - assertEquals(cancerTypeInfoMap.containsKey(ClinicalAttribute.CANCER_TYPE_DETAILED), true); - assertEquals(cancerTypeInfoMap.get(ClinicalAttribute.CANCER_TYPE).size(), 2); - assertEquals(cancerTypeInfoMap.get(ClinicalAttribute.CANCER_TYPE_DETAILED).size(), 5); - - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestCutInvalidCases.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestCutInvalidCases.java deleted file mode 100644 index fbb6fa6aa65..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestCutInvalidCases.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Test; - -import static org.junit.Assert.*; - -import java.io.File; - -/** - * JUnit test for CutInvalidCases class. - */ -public class TestCutInvalidCases { - - @Test - public void testCutInvalidCases() throws Exception { - // TBD: change this to use getResourceAsStream() - File casesExcludedFile = new File("src/test/resources/cases_excluded_test.txt"); - File dataFile = new File("src/test/resources/cna_test.txt"); - CutInvalidCases parser = new CutInvalidCases(casesExcludedFile, - dataFile); - String out = parser.process(); - - String lines[] = out.split("\n"); - String headerLine = lines[0]; - String parts[] = headerLine.split("\t"); - for (String header : parts) { - if (header.trim().equals("TCGA-A1-A0SB-01")) { - fail("TCGA-06-0142 should have been stripped out."); - } else if (header.trim().equals("TCGA-A1-A0SD-01")) { - fail("TCGA-06-0142 should have been stripped out."); - } else if (header.trim().equals("TCGA-A1-A0SE-01")) { - fail("TCGA-06-0159 should have been stripped out."); - } - } - int numHeaders = parts.length; - parts = lines[4].split("\t"); - - // Should go from 16 to 13 columns. - assertEquals (13, numHeaders); - assertEquals (13, parts.length); - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestGenerateMutationData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestGenerateMutationData.java deleted file mode 100644 index 67eb91d665d..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestGenerateMutationData.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.File; - -/** - * JUnit test for GenerateMutationData class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestGenerateMutationData { - - @Test - public void testGenerateMutationData() throws Exception { - - // TBD: change this to use getResourceAsStream() - File allCasesFile = new File ("target/test-classes/all_cases.txt"); - File sequencedGeneFile = new File ("target/test-classes/sequenced_genes.txt"); - File sequencedCasesFile = new File ("target/test-classes/sequenced_cases.txt"); - File mutationDataFile = new File ("target/test-classes/mutations.txt"); - ProgressMonitor.setConsoleMode(false); - GenerateMutationData util = new GenerateMutationData (allCasesFile, sequencedGeneFile, - sequencedCasesFile, mutationDataFile); - String out = util.execute(); - String lines[] = out.split("\n"); - boolean line1Pass = false; - boolean line2Pass = false; - boolean line3Pass = false; - for (String line: lines) { - if (line.startsWith("1277\tTCGA-02-0083")) { - assertEquals ("1277\tTCGA-02-0083\tP343S,P774S", line.trim()); - line1Pass = true; - } else if (line.startsWith("7157\tTCGA-06-0241")) { - assertEquals ("7157\tTCGA-06-0241\tR248Q", line); - line2Pass = true; - } else if (line.startsWith("1956\tTCGA-02-0001")) { - assertEquals ("1956\tTCGA-02-0001\t0", line); - line3Pass = true; - } - } - assertTrue (line1Pass); - assertTrue (line2Pass); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCaisesClinicalXML.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCaisesClinicalXML.java deleted file mode 100644 index 8900fdcfe54..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCaisesClinicalXML.java +++ /dev/null @@ -1,111 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.File; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoPatient; -import org.mskcc.cbio.portal.dao.DaoSample; -import org.mskcc.cbio.portal.dao.DaoTypeOfCancer; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.Patient; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.model.TypeOfCancer; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * - * @author jgao - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportCaisesClinicalXML { - - @Before - public void setUp() throws Exception { - TypeOfCancer typeOfCancer = new TypeOfCancer(); - typeOfCancer.setTypeOfCancerId("prad"); - typeOfCancer.setName("prad"); - typeOfCancer.setShortName("prad"); - DaoTypeOfCancer.addTypeOfCancer(typeOfCancer); - - CancerStudy cancerStudy = new CancerStudy("prad","prad","prad","prad",true); - cancerStudy.setReferenceGenome("hg19"); - DaoCancerStudy.addCancerStudy(cancerStudy); - - int studyId = DaoCancerStudy.getCancerStudyByStableId("prad").getInternalId(); - - DaoPatient.addPatient(new Patient(cancerStudy, "97115001")); - DaoPatient.addPatient(new Patient(cancerStudy, "97115002")); - DaoPatient.addPatient(new Patient(cancerStudy, "97115003")); - - int patient1 = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "97115001").getInternalId(); - int patient2 = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "97115002").getInternalId(); - - DaoSample.addSample(new Sample("SC_9022-Tumor", patient1, "prad")); - DaoSample.addSample(new Sample("SC_9023-Tumor", patient2, "prad")); - } - - // TODO add test methods here. - // The methods must be annotated with annotation @Test. For example: - // - @Test - public void test() throws Exception { - File xmlFile = new File("target/test-classes/data_clinical_caises.xml"); - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId("prad"); - ImportCaisesClinicalXML importCaisesClinicalXML = new ImportCaisesClinicalXML(null); - importCaisesClinicalXML.setFile(xmlFile, cancerStudy); - importCaisesClinicalXML.importData(); - } - -// @Test -// public void temp() throws Exception { -// CancerStudy cancerStudy = new CancerStudy("prad_su2c","prad_su2c","prad_su2c","prad",true); -// cancerStudy.setInternalId(1); -// DaoCancerStudy.addCancerStudy(cancerStudy); -// -// ImportClinicalData.main(new String[]{"/Users/jgao/projects/cbio-portal-data/studies/prad/su2c/data_clinical.txt", "prad_su2c"}); -// ImportCaisesClinicalXML.main(new String[] {"--data","/Users/jgao/projects/cbio-portal-data/studies/prad/su2c/data_clinical_caises.xml", -// "--meta","/Users/jgao/projects/cbio-portal-data/studies/prad/su2c/meta_clinical_caises.txt", -// "--loadMode", "bulkLoad"}); -// } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportClinicalData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportClinicalData.java deleted file mode 100644 index 334a4553a29..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportClinicalData.java +++ /dev/null @@ -1,453 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Before; -import org.junit.Rule; -import org.junit.Test; -import org.junit.rules.ExpectedException; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.mskcc.cbio.portal.scripts.ImportClinicalData; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.*; -import java.util.*; - -/** - * Tests Import of Clinical Data. - * - * @author Ethan Cerami. - * @author Ersin Ciftci - * @author Pieter Lukasse - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportClinicalData { - - //To use in test cases where we expect an exception: - @Rule - public ExpectedException exception = ExpectedException.none(); - - private CancerStudy cancerStudy = null; - - /** - * This is executed n times, for each of the n test methods below: - * @throws DaoException - */ - @Before - public void setUp() throws DaoException - { - DaoCancerStudy.reCacheAll(); - ProgressMonitor.resetWarnings(); - - // new dummy study to simulate importing clinical data in empty study: - cancerStudy = new CancerStudy("testnew","testnew","testnew","brca",true); - cancerStudy.setReferenceGenome("hg19"); - DaoCancerStudy.addCancerStudy(cancerStudy); - // implicit test: - cancerStudy = DaoCancerStudy.getCancerStudyByStableId("testnew"); - } - - /** - * Test importing of Clinical Data File with a duplicated record in "MIXED_ATTRIBUTES" - * type of file. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalData_WithDuplInMixedAttrFormat() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data_small.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "MIXED_ATTRIBUTES", false); - importClinicalData.importData(); - ConsoleUtil.showWarnings(); - - ArrayList warnings = ProgressMonitor.getWarnings(); - //expect 1 warnings: about duplicated TCGA-BH-A18K-01 - assertEquals(1, warnings.size()); - assertTrue(warnings.get(0).contains("Sample TCGA-BH-A18K-01 found to be duplicated")); - } - - /** - * Test importing of Clinical Data File when there is data a line with - * wrong number of columns. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalDataNewStudy_WithWrongNrCols() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data_small_WRONG_NR_COLS.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "MIXED_ATTRIBUTES", false); - - exception.expect(IllegalArgumentException.class); - exception.expectMessage("Number of columns in line is not as expected"); - importClinicalData.importData(); - ConsoleUtil.showWarnings(); - } - - /** - * Test importing of Patient Data File with duplication error. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportPatientDataNewStudy_WithDuplError() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data_small_PATIENT_dupl_error.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "PATIENT_ATTRIBUTES", false); - - exception.expect(RuntimeException.class); - exception.expectMessage("Duplicated patient"); - importClinicalData.importData(); - ConsoleUtil.showWarnings(); - } - - /** - * Test importing of Patient Data File with data type error. - * - */ - @Test - public void testImportPatientDataNewStudy_WithDataTypeError() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data_small_PATIENT_datatype_error.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "PATIENT_ATTRIBUTES", false); - - exception.expect(RuntimeException.class); - exception.expectMessage("Invalid value for datatype"); - importClinicalData.importData(); - ConsoleUtil.showWarnings(); - } - - /** - * Test importing of Clinical Data File, using the new data format, i.e. with data - * split over PATIENT and SAMPLES files. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalDataSurvival_SplitMode() throws Exception { - // import sample data first: - File clinicalFile = new File("src/test/resources/clinical_data_SAMPLE.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "SAMPLE_ATTRIBUTES", false); - importClinicalData.importData(); - - // import patient data: - clinicalFile = new File("src/test/resources/clinical_data_PATIENT.txt"); - importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "PATIENT_ATTRIBUTES", false); - importClinicalData.importData(); - - checkSurvivalDataAndSampleCount(cancerStudy); - } - - /** - * Test importing of Clinical Data File, using old MIXED_ATTRIBUTES format. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalDataSurvival() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "MIXED_ATTRIBUTES", false); - importClinicalData.importData(); - - checkSurvivalDataAndSampleCount(cancerStudy); - } - - @Test - public void testImportClinicalDataTwoSampleFiles() throws Exception { - - File clinicalFile = new File("src/test/resources/clinical_data_small_SAMPLE.txt"); - ImportClinicalData importClinicalData = new ImportClinicalData(null); - importClinicalData.setFile(cancerStudy, clinicalFile, "SAMPLE_ATTRIBUTES", false); - importClinicalData.importData(); - - clinicalFile = new File("src/test/resources/clinical_data_small_SAMPLE2.txt"); - importClinicalData = new ImportClinicalData(null); - importClinicalData.setFile(cancerStudy, clinicalFile, "SAMPLE_ATTRIBUTES", false); - importClinicalData.importData(); - - LinkedHashSet caseSet = new LinkedHashSet(); - caseSet.add("TEST-A2-A04P"); - - List clinicalCaseList = DaoClinicalData.getSurvivalData(cancerStudy.getInternalId(), caseSet); - assertEquals (Integer.valueOf(2), clinicalCaseList.get(0).getSampleCount()); - } - - private void checkSurvivalDataAndSampleCount(CancerStudy cancerStudy) throws DaoException { - LinkedHashSet caseSet = new LinkedHashSet(); - caseSet.add("TCGA-A1-A0SB"); - caseSet.add("TCGA-A1-A0SE"); - caseSet.add("TCGA-A1-A0SI"); - caseSet.add("TCGA-A1-A0SC"); - caseSet.add("TCGA-04-1341"); - - //get survival data, unsorted: - List clinicalCaseList = DaoClinicalData.getSurvivalData(cancerStudy.getInternalId(), caseSet); - assertEquals (5, clinicalCaseList.size()); - - int countChecks = 0; - for (Patient patientData : clinicalCaseList) { - if (patientData.getStableId().equals("TCGA-A1-A0SB")) { - assertEquals (Double.valueOf(79.04), patientData.getAgeAtDiagnosis()); - assertEquals ("1:DECEASED", patientData.getOverallSurvivalStatus()); - assertEquals ("1:Recurred/Progressed", patientData.getDiseaseFreeSurvivalStatus()); - assertEquals (Double.valueOf(43.8), patientData.getOverallSurvivalMonths()); - assertEquals (Double.valueOf(15.05), patientData.getDiseaseFreeSurvivalMonths()); - assertEquals (Integer.valueOf(1), patientData.getSampleCount()); - countChecks++; - } - else if (patientData.getStableId().equals("TCGA-A1-A0SE")) { - assertEquals (null, patientData.getDiseaseFreeSurvivalMonths()); - assertEquals (Integer.valueOf(1), patientData.getSampleCount()); - countChecks++; - } - else if (patientData.getStableId().equals("TCGA-A1-A0SI")) { - assertEquals ("TCGA-A1-A0SI", patientData.getStableId()); - assertEquals (Double.valueOf(55.53), patientData.getAgeAtDiagnosis()); - assertEquals ("0:LIVING", patientData.getOverallSurvivalStatus()); - assertEquals ("0:DiseaseFree", patientData.getDiseaseFreeSurvivalStatus()); - assertEquals (Double.valueOf(49.02), patientData.getOverallSurvivalMonths()); - assertEquals (Double.valueOf(49.02), patientData.getDiseaseFreeSurvivalMonths()); - assertEquals (Integer.valueOf(1), patientData.getSampleCount()); - countChecks++; - } else if (patientData.getStableId().equals("TCGA-A1-A0SC")) { - assertEquals ("TCGA-A1-A0SC", patientData.getStableId()); - assertEquals (Double.valueOf(70.64), patientData.getAgeAtDiagnosis()); - assertEquals ("1:DECEASED", patientData.getOverallSurvivalStatus()); - assertEquals ("1:Recurred/Progressed", patientData.getDiseaseFreeSurvivalStatus()); - assertEquals (Double.valueOf(40.89), patientData.getOverallSurvivalMonths()); - assertEquals (Double.valueOf(12.95), patientData.getDiseaseFreeSurvivalMonths()); - assertEquals (Integer.valueOf(1), patientData.getSampleCount()); - countChecks++; - } else { - assertEquals ("TCGA-04-1341", patientData.getStableId()); - assertEquals (Double.valueOf(85.52), patientData.getAgeAtDiagnosis()); - assertEquals ("0:LIVING", patientData.getOverallSurvivalStatus()); - assertEquals ("0:DiseaseFree", patientData.getDiseaseFreeSurvivalStatus()); - assertEquals (null, patientData.getOverallSurvivalMonths()); - assertEquals (null, patientData.getDiseaseFreeSurvivalMonths()); - assertEquals (Integer.valueOf(1), patientData.getSampleCount()); - countChecks++; - } - } - //make sure all entries were checked: - assertEquals(5, countChecks); - } - - /** - * Test importing of Clinical Data File, using the new data format, i.e. with data - * split over PATIENT and SAMPLES files. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalDataSlice_SplitMode() throws Exception { - // import sample data first: - File clinicalFile = new File("src/test/resources/clinical_data_SAMPLE.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "SAMPLE_ATTRIBUTES", false); - importClinicalData.importData(); - - // import patient data: - clinicalFile = new File("src/test/resources/clinical_data_PATIENT.txt"); - importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "PATIENT_ATTRIBUTES", false); - importClinicalData.importData(); - - checkDataSlice(cancerStudy); - } - - /** - * Test importing of Clinical Data File, using old MIXED_ATTRIBUTES format. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalDataSlice() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "MIXED_ATTRIBUTES", false); - importClinicalData.importData(); - - checkDataSlice(cancerStudy); - } - - private void checkDataSlice(CancerStudy cancerStudy) throws DaoException { - List slice = DaoClinicalData.getDataSlice(cancerStudy.getInternalId(), Arrays.asList("PLATINUMSTATUS")); - assertTrue(slice.size() >= 1); - - ClinicalParameterMap paramMap = slice.get(0); - assertEquals ("PLATINUMSTATUS", paramMap.getName()); - assertEquals("Sensitive", paramMap.getValue("TCGA-A1-A0SB")); - assertEquals("NA", paramMap.getValue("TCGA-A1-A0SE")); - assertEquals(3, paramMap.getDistinctCategories().size()); - } - - /** - * Test importing of Clinical Data File. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalDataParameters() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "MIXED_ATTRIBUTES", false); - importClinicalData.importData(); - - Set paramSet = DaoClinicalData.getDistinctParameters(cancerStudy.getInternalId()); - assertEquals (10, paramSet.size()); - } - - /** - * Test mandatory SAMPLE_ID field - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalData_SampleIdError() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data_small_missing_SAMPLEID.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "SAMPLE_ATTRIBUTES", false); - - exception.expect(RuntimeException.class); - exception.expectMessage("failure to find SAMPLE_ID"); - importClinicalData.importData(); - ConsoleUtil.showWarnings(); - } - - /** - * Test mandatory PATIENT_ID field - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportClinicalData_PatientIdError() throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data_small_missing_PATIENTID.txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, "SAMPLE_ATTRIBUTES", false); - - exception.expect(RuntimeException.class); - exception.expectMessage("failure to find PATIENT_ID"); - importClinicalData.importData(); - ConsoleUtil.showWarnings(); - } - - /** - * Test loading a correct file twice. Should give duplication error. - * @throws Exception - */ - @Test - public void testImportClinicalData_CorrectFileTwice1() throws Exception { - checkCorrectFileTwice("PATIENT"); - } - public void testImportClinicalData_CorrectFileTwice2() throws Exception { - checkCorrectFileTwice("SAMPLE"); - } - private void checkCorrectFileTwice(String type) throws Exception { - File clinicalFile = new File("src/test/resources/clinical_data_small_" + type + ".txt"); - // initialize an ImportClinicalData instance without args to parse - ImportClinicalData importClinicalData = new ImportClinicalData(null); - // set the info usually parsed from args - importClinicalData.setFile(cancerStudy, clinicalFile, type + "_ATTRIBUTES", false); - importClinicalData.importData(); - // loading twice should also give error - exception.expect(DaoException.class); - // it is not a specific "duplication" error message but a general DB error since the - // validation only gives specific error when in same file (maybe at some point we want to support clinical data - // in multiple PATIENT and SAMPLE files(?) ): - exception.expectMessage("DB Error"); - importClinicalData.importData(); - } - - /** - * Tests to try out the MissingAttributeValues enum and ensure it filters out the - * correct values. - * - */ - @Test - public void testHasMethod() { - assertTrue(ImportClinicalData.MissingAttributeValues.has("NA")); - assertTrue(ImportClinicalData.MissingAttributeValues.has("na")); - assertFalse(ImportClinicalData.MissingAttributeValues.has("n/a")); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCnaDiscreteLongData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCnaDiscreteLongData.java deleted file mode 100644 index b43ab07475b..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCnaDiscreteLongData.java +++ /dev/null @@ -1,741 +0,0 @@ -/* - * Copyright (c) 2018 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * @author Sander Tan - */ - -package org.mskcc.cbio.portal.scripts; - -import org.codehaus.jackson.map.*; -import org.junit.After; -import org.junit.Assert; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.CnaEvent; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.util.StableIdUtil; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import java.io.File; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.*; - -import static com.google.common.collect.Lists.newArrayList; -import static com.google.common.collect.Sets.newHashSet; -import static java.util.stream.Collectors.joining; -import static java.util.stream.Collectors.toList; -import static org.cbioportal.model.MolecularProfile.DataType.DISCRETE; -import static org.cbioportal.model.MolecularProfile.ImportType.DISCRETE_LONG; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertTrue; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = {"classpath:/applicationContext-dao.xml"}) -@Rollback -@Transactional -public class TestImportCnaDiscreteLongData { - int studyId; - GeneticProfile geneticProfile; - String genePanel = "TESTPANEL_CNA_DISCRETE_LONG_FORMAT"; - Set noNamespaces = new HashSet<>(); - - @Before - public void setUp() throws DaoException { - studyId = DaoCancerStudy - .getCancerStudyByStableId("study_tcga_pub") - .getInternalId(); - this.geneticProfile = DaoGeneticProfile - .getGeneticProfileByStableId("study_tcga_pub_cna_long"); - } - - @After - public void cleanUp() throws DaoException { - MySQLbulkLoader.flushAll(); - } - - /** - * Test the import of cna data file in long format with 2 samples - */ - @Test - public void testImportCnaDiscreteLongDataAddsSamples() throws Exception { - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test new samples are added: - List expectedSampleIds = newArrayList("TCGA-A1-A0SB-11", "TCGA-A2-A04U-11"); - for (String id : expectedSampleIds) { - assertSampleExistsInGeneticProfile(id); - } - } - - /** - * Test the import of cna data file in long format with: - * - 10 cna events (-2, -1.5 or 2) - * - 4 non-cna events (0, -1, 1) - */ - @Test - public void testImportCnaDiscreteLongDataAddsCnaEvents() throws Exception { - List beforeCnaEvents = DaoCnaEvent.getAllCnaEvents(); - assertEquals(beforeCnaEvents.size(), 17); - - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces - ).importData(); - - List resultCnaEvents = DaoCnaEvent.getAllCnaEvents(); - - // Test all cna events are added: - int expectedCnaEventCount = 10; - int expectedNewCnaEvents = beforeCnaEvents.size() + expectedCnaEventCount; - assertEquals( - expectedNewCnaEvents, - resultCnaEvents.size() - ); - - // Test gene with homozygous deletion and amplification has two cna events: - List cnaEvents = resultCnaEvents - .stream() - .filter(e -> e.getGene().getEntrezGeneId() == 2115) - .map(e -> e.getAlteration().getDescription()) - .collect(toList()); - assertEquals(2, cnaEvents.size()); - assertTrue(newArrayList("Amplified", "Homozygously deleted").containsAll(cnaEvents)); - - // Test gene with partial deletion and amplification has two cna events: - List convertedCnaEvents = resultCnaEvents - .stream() - .filter(e -> e.getGene().getEntrezGeneId() == 3983) - .map(e -> e.getAlteration().getDescription()) - .collect(toList()); - assertEquals(2, cnaEvents.size()); - assertTrue(newArrayList("Amplified", "Homozygously deleted").containsAll(cnaEvents)); - - // Test gene with homozygous deletion and amplification has no cna events: - List skippedCnaEvents = resultCnaEvents - .stream() - .filter(e -> e.getGene().getEntrezGeneId() == 56914) - .collect(toList()); - assertEquals(0, skippedCnaEvents.size()); - } - - /** - * Test the import of cna data file in long format with 7 genes - */ - @Test - public void testImportCnaDiscreteLongDataAddsGeneticAlterations() throws Exception { - List beforeGeneticAlterations = getAllGeneticAlterations(); - assertEquals(beforeGeneticAlterations.size(), 42); - - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test genetic alterations are added for all genes: - List resultGeneticAlterations = getAllGeneticAlterations(); - List expectedEntrezIds = newArrayList(2115L, 27334L, 57670L, 80070L, 3983L, 56914L, 2261L); - assertEquals(beforeGeneticAlterations.size() + expectedEntrezIds.size(), resultGeneticAlterations.size()); - } - - /** - * Missing cna events should be inserted in genetic_events table as missing value: - * - data file containing two samples and two genes; - * - missing combination: gene ETV1 * sample TCGA-A2-A04U-11 - */ - @Test - public void testImportCnaDiscreteLongDataAddsMissingGeneticAlterations() throws Exception { - List beforeGeneticAlterations = getAllGeneticAlterations(); - assertEquals(beforeGeneticAlterations.size(), 42); - - File file = new File("src/test/resources/data_cna_discrete_import_test_with_cna_events_missing.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test genetic alteration are added of non-cna event: - TestGeneticAlteration geneticAlteration = getGeneticAlterationByEntrez(2115); - assertEquals(geneticProfile.getGeneticProfileId(), geneticAlteration.geneticProfileId); - TestGeneticProfileSample geneticProfileSample = getGeneticProfileSample(geneticProfile.getGeneticProfileId()); - assertEquals("21,20,", geneticProfileSample.orderedSampleList); - assertEquals(getSampleStableIdFromInternalId(21), "TCGA-A1-A0SB-11"); - assertEquals(getSampleStableIdFromInternalId(20), "TCGA-A2-A04U-11"); - // Sample TCGA-A1-A0SB-11 has value 2, and TCGA-A2-A04U-11 is missing: - assertEquals("2,,", geneticAlteration.values); - } - - /** - * Test the imported events match the imported genetic profile samples - */ - @Test - public void testImportCnaDiscreteLongDataAddsGeneticAlterationsAndProfileSamplesInCorrectOrder() throws Exception { - List beforeGeneticAlterations = getAllGeneticAlterations(); - assertEquals(beforeGeneticAlterations.size(), 42); - - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test order of genetic alteration values: - TestGeneticAlteration geneticAlteration = getGeneticAlterationByEntrez(2115L); - assertEquals(geneticProfile.getGeneticProfileId(), geneticAlteration.geneticProfileId); - assertEquals("2,-2,", geneticAlteration.values); - - // Test order of samples in genetic profile samples matches the order in genetic alteration: - TestGeneticProfileSample geneticProfileSample = getGeneticProfileSample(geneticProfile.getGeneticProfileId()); - assertEquals("21,20,", geneticProfileSample.orderedSampleList); - } - - /** - * Test that entries are imported when valid entrez IDs are missing but Hugo IDs are provided - */ - @Test - public void testImportCnaDiscreteLongDataHandlesEntriesWithoutEntrezButWithHugo() throws Exception { - List beforeGeneticAlterations = getAllGeneticAlterations(); - assertEquals(beforeGeneticAlterations.size(), 42); - - File file = new File("src/test/resources/data_cna_discrete_import_test_without_entrez_with_hugo.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test order of genetic alteration values: - TestGeneticAlteration geneticAlteration = getGeneticAlterationByEntrez(57670L); - assertEquals(geneticProfile.getGeneticProfileId(), geneticAlteration.geneticProfileId); - assertEquals("2,-2,", geneticAlteration.values); - } - - /** - * Test that entries are imported when invalid entrez IDs and valid Hugo IDs are provided - */ - @Test - public void testImportCnaDiscreteLongDataHandlesEntriesWithWrongEntrezAndCorrectHugo() throws Exception { - List beforeGeneticAlterations = getAllGeneticAlterations(); - assertEquals(beforeGeneticAlterations.size(), 42); - - File file = new File("src/test/resources/data_cna_discrete_import_test_with_wrong_entrez_and_correct_hugo.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test order of genetic alteration values: - TestGeneticAlteration geneticAlteration = getGeneticAlterationByEntrez(57670L); - assertEquals(geneticProfile.getGeneticProfileId(), geneticAlteration.geneticProfileId); - assertEquals("2,-2,", geneticAlteration.values); - } - - /** - * Test genetic events are imported, even when not imported as cna event - */ - @Test - public void testImportCnaDiscreteLongDataAddsGeneticAlterationsFromNonCnaEvents() throws Exception { - List beforeGeneticAlterations = getAllGeneticAlterations(); - assertEquals(beforeGeneticAlterations.size(), 42); - - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test genetic alteration are added of non-cna event: - TestGeneticAlteration geneticAlteration = getGeneticAlterationByEntrez(56914); - assertEquals(geneticProfile.getGeneticProfileId(), geneticAlteration.geneticProfileId); - TestGeneticProfileSample geneticProfileSample = getGeneticProfileSample(geneticProfile.getGeneticProfileId()); - assertEquals("21,20,", geneticProfileSample.orderedSampleList); - assertEquals(getSampleStableIdFromInternalId(21), "TCGA-A1-A0SB-11"); - assertEquals(getSampleStableIdFromInternalId(20), "TCGA-A2-A04U-11"); - // Sample TCGA-A1-A0SB-11 has value 1, and TCGA-A2-A04U-11 has value 0: - assertEquals("1,0,", geneticAlteration.values); - } - - /** - * Test genetic events are imported, even when not imported as cna event - */ - @Test - public void testImportCnaDiscreteLongDataIgnoresLineWithDuplicateGene() throws Exception { - List beforeGeneticAlterations = getAllGeneticAlterations(); - assertEquals(beforeGeneticAlterations.size(), 42); - - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces).importData(); - - // Test genetic alteration are deduplicated: - TestGeneticAlteration geneticAlteration = getGeneticAlterationByEntrez(57670); - assertEquals(geneticProfile.getGeneticProfileId(), geneticAlteration.geneticProfileId); - // Should not be "2,-2,2" or (2,2): - assertEquals("2,-2,", geneticAlteration.values); - } - - /** - * Test the import of cna data file in long format with: - * - 3 cna events with pd annotations - */ - @Test - public void testImportCnaDiscreteLongDataAddsPdAnnotations() throws Exception { - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces - ).importData(); - List genes = newArrayList(3983L, 27334L, 2115L); - List resultCnaEvents = DaoCnaEvent.getAllCnaEvents() - .stream() - .filter(event -> genes.contains(event.getGene().getEntrezGeneId())) - .collect(toList()); - String sample = "TCGA-A2-A04U-11"; - List allCnaPdAnnotations = getAllCnaPdAnnotations(createPrimaryKeys(sample, resultCnaEvents)); - assertEquals(3, allCnaPdAnnotations.size()); - String allDriverTiersFilters = allCnaPdAnnotations - .stream() - .map(a -> a.driverTiersFilter) - .collect(joining(",")); - assertEquals("Class 2,Class 1,NA", allDriverTiersFilters); - } - - @Test - public void testImportCnaDiscreteLongData_changesProfileDatatypeFromDiscreteLongToDiscrete() throws Exception { - File file = new File("src/test/resources/data_cna_discrete_import_test.txt"); - - String startInputDatatype = getGeneticProfileDatatype(this.geneticProfile.getGeneticProfileId()); - assertEquals(DISCRETE_LONG.name(), startInputDatatype); - - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - noNamespaces - ).importData(); - - String resultDatatype = getGeneticProfileDatatype(this.geneticProfile.getGeneticProfileId()); - assertEquals(DISCRETE.name(), resultDatatype); - } - - - /** - * Test the import of cna data file in long format with: - * - two custom namespaces that should be imported - * - one unknown namespace that should be ignored - */ - @Test - public void testImportCnaDiscreteLongDataOnlyAddsSpecifiedCustomNamespaceColumns() throws Exception { - ObjectMapper mapper = new ObjectMapper(); - File file = new File("src/test/resources/data_cna_discrete_import_test_with_namespaces.txt"); - Set namespacesToImport = newHashSet("MyNamespace", "MyNamespace2"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - namespacesToImport - ).importData(); - - // All namespace columns provided: - List results = getAnnotationJsonBy(geneticProfile.getGeneticProfileId()); - assertEquals(2, results.size()); - String resultAnnotationJson = results - .stream() - .filter(r -> r.entrezGeneId == 2115L) - .map(r -> r.annotationJson) - .findFirst().get(); - - // Namespace 'InvalidNamespace' should be ignored: - String expectedAnnotationJson = "{\"MyNamespace\": {\"column1\": \"MyValue1\", \"column2\": \"MyValue2\"}, \"MyNamespace2\": {\"blarp\": \"blorp\"}}"; - assertEquals( - mapper.readTree(results.get(0).annotationJson), - mapper.readTree(expectedAnnotationJson) - ); - assertEquals( - mapper.readTree(expectedAnnotationJson), - mapper.readTree(resultAnnotationJson) - ); - } - - /** - * Test the import of cna data file in long format with: - * - one row with both namespaces - * - one row with a missing namespace, imported as null - */ - @Test - public void testImportCnaDiscreteLongDataImportsMissingNamespacesAsNull() throws Exception { - ObjectMapper mapper = new ObjectMapper(); - File file = new File("src/test/resources/data_cna_discrete_import_test_with_namespaces.txt"); - Set namespacesToImport = newHashSet("MyNamespace", "MyNamespace2"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - namespacesToImport - ).importData(); - - // All namespace columns provided: - List results = getAnnotationJsonBy(geneticProfile.getGeneticProfileId()); - assertEquals(2, results.size()); - String resultAnnotationJson = results - .stream() - .filter(r -> r.entrezGeneId == 2115L) - .map(r -> r.annotationJson) - .findFirst().get(); - String expectedAnnotationJson = "{\"MyNamespace\": {\"column1\": \"MyValue1\", \"column2\": \"MyValue2\"}, \"MyNamespace2\": {\"blarp\": \"blorp\"}}"; - assertEquals( - mapper.readTree(results.get(0).annotationJson), - mapper.readTree(expectedAnnotationJson) - ); - assertEquals( - mapper.readTree(expectedAnnotationJson), - mapper.readTree(resultAnnotationJson) - ); - - // Only one namespace column provided: - resultAnnotationJson = results - .stream() - .filter(r -> r.entrezGeneId == 27334L) - .map(r -> r.annotationJson) - .findFirst().get(); - expectedAnnotationJson = "{\"MyNamespace\": {\"column1\": null, \"column2\": null}, \"MyNamespace2\": {\"blarp\": \"bloerp\"}}"; - assertEquals( - mapper.readTree(expectedAnnotationJson), - mapper.readTree(resultAnnotationJson) - ); - } - - /** - * Test the import of cna data file in long format with: - * - two rows with the same gene and two different samples each with their own annotationJson - */ - @Test - public void testImportCnaDiscreteLongDataAddsCustomNamespaceColumnsForEachSample() throws Exception { - ObjectMapper mapper = new ObjectMapper(); - File file = new File("src/test/resources/data_cna_discrete_import_test_with_namespaces2.txt"); - Set namespaces = newHashSet("MyNamespace", "MyNamespace2"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - namespaces - ).importData(); - - List results = getAnnotationJsonBy(geneticProfile.getGeneticProfileId()); - assertEquals(2, results.size()); - String expectedAnnotationJsonA1 = "{\"MyNamespace\": {\"column1\": \"v1a\", \"column2\": \"v2a\"}, \"MyNamespace2\": {\"blarp\": \"bloerp\"}}"; - String expectedAnnotationJsonA2 = "{\"MyNamespace\": {\"column1\": \"v1b\", \"column2\": \"v2b\"}, \"MyNamespace2\": {\"blarp\": \"bleurp\"}}"; - - String resultAnnotationJsonA1 = results - .stream() - .filter(r -> "TCGA-A1-A0SB-11".equals(r.stableId)) - .map(r -> r.annotationJson) - .findFirst().get(); - assertEquals( - mapper.readTree(expectedAnnotationJsonA1), - mapper.readTree(resultAnnotationJsonA1) - ); - String resultAnnotationJsonA2 = results - .stream() - .filter(r -> "TCGA-A2-A04U-11".equals(r.stableId)) - .map(r -> r.annotationJson) - .findFirst().get(); - assertEquals( - mapper.readTree(expectedAnnotationJsonA2), - mapper.readTree(resultAnnotationJsonA2) - ); - } - /** - * Test the import of cna data file in long format with: - * - two rows with the same gene and two different samples each with their own annotationJson - */ - @Test - public void testImportCnaDiscreteLongDataImportsCustomNamespaceColumnsAsNullWhenMissing() throws Exception { - ObjectMapper mapper = new ObjectMapper(); - File file = new File("src/test/resources/data_cna_discrete_import_test_without_namespaces.txt"); - Set namespaces = newHashSet("MyNamespace", "MyNamespace2"); - new ImportCnaDiscreteLongData( - file, - geneticProfile.getGeneticProfileId(), - genePanel, - DaoGeneOptimized.getInstance(), - DaoGeneticAlteration.getInstance(), - namespaces - ).importData(); - - List results = getAnnotationJsonBy(geneticProfile.getGeneticProfileId()); - assertEquals(1, results.size()); - - String expectedAnnotationJson = null; - assertEquals(expectedAnnotationJson, results.get(0).annotationJson); - } - - private List createPrimaryKeys(String sample, List cnaEvents) { - return cnaEvents.stream().map(e -> { - TestPdAnnotationPK pk = new TestPdAnnotationPK(); - pk.geneticProfileId = geneticProfile.getGeneticProfileId(); - pk.sampleId = DaoSample.getSampleByCancerStudyAndSampleId( - geneticProfile.getCancerStudyId(), - StableIdUtil.getSampleId(sample) - ).getInternalId(); - pk.alterationEventId = e.getEventId(); - return pk; - }).collect(toList()); - } - - private void assertSampleExistsInGeneticProfile(String sampleId) throws DaoException { - String sampleStableId = StableIdUtil.getSampleId(sampleId); - - Sample sample = DaoSample.getSampleByCancerStudyAndSampleId( - geneticProfile.getCancerStudyId(), - sampleStableId - ); - Assert.assertNotNull(sample); - Assert.assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile( - sample.getInternalId(), - geneticProfile.getGeneticProfileId() - )); - } - - private String getGeneticProfileDatatype(long geneticProfileId) throws DaoException { - return runSelectQuery( - "select DATATYPE " + - "FROM genetic_profile " + - "WHERE GENETIC_PROFILE_ID=" + geneticProfileId + " ;", - (ResultSet rs) -> rs.getString("DATATYPE") - ).get(0); - } - - class NamespaceAnnotationJson { - public int cnaEventId; - public int sampleId; - public int entrezGeneId; - public String stableId; - public String annotationJson; - } - - private List getAnnotationJsonBy(long geneticProfileId) throws DaoException { - return runSelectQuery( - "select cna_event.CNA_EVENT_ID, SAMPLE_ID, STABLE_ID, GENETIC_PROFILE_ID, ENTREZ_GENE_ID, ANNOTATION_JSON " + - "FROM sample_cna_event " + - "LEFT JOIN sample ON sample.INTERNAL_ID = sample_cna_event.SAMPLE_ID " + - "LEFT JOIN cna_event ON cna_event.CNA_EVENT_ID = sample_cna_event.CNA_EVENT_ID " + - "WHERE GENETIC_PROFILE_ID=" + geneticProfileId + " ;", - (ResultSet rs) -> { - NamespaceAnnotationJson result = new NamespaceAnnotationJson(); - result.cnaEventId = rs.getInt("CNA_EVENT_ID"); - result.sampleId = rs.getInt("SAMPLE_ID"); - result.stableId = rs.getString("STABLE_ID"); - result.entrezGeneId = rs.getInt("ENTREZ_GENE_ID"); - result.annotationJson = rs.getString("ANNOTATION_JSON"); - return result; - }); - } - - private List getAllCnaPdAnnotations(List pks) throws DaoException { - List pkStrings = new ArrayList<>(); - for (TestPdAnnotationPK pk : pks) { - pkStrings.add(String.format( - "( ALTERATION_EVENT_ID=%d AND GENETIC_PROFILE_ID=%d AND SAMPLE_ID=%d )", - pk.alterationEventId, pk.geneticProfileId, pk.sampleId - )); - } - - String q = "SELECT DRIVER_TIERS_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_FILTER, " - + "ALTERATION_EVENT_ID, GENETIC_PROFILE_ID, SAMPLE_ID " - + "FROM alteration_driver_annotation "; - if (pks.size() > 0) { - q += "WHERE " + String.join(" OR ", pkStrings); - } - - return runSelectQuery( - q, - (ResultSet rs) -> { - TestPdAnnotation line = new TestPdAnnotation(); - line.driverFilter = rs.getString("DRIVER_FILTER"); - line.driverTiersFilter = rs.getString("DRIVER_TIERS_FILTER"); - line.driverFilterAnnotation = rs.getString("DRIVER_FILTER_ANNOTATION"); - line.driverTiersFilterAnnotation = rs.getString("DRIVER_TIERS_FILTER_ANNOTATION"); - - line.pk = new TestPdAnnotationPK(); - line.pk.alterationEventId = rs.getInt("ALTERATION_EVENT_ID"); - line.pk.geneticProfileId = rs.getInt("GENETIC_PROFILE_ID"); - line.pk.sampleId = rs.getInt("SAMPLE_ID"); - - return line; - }); - } - - private List getAllGeneticAlterations() throws DaoException { - return runSelectQuery("SELECT ga.*, g.HUGO_GENE_SYMBOL FROM genetic_alteration as ga left join gene as g on ga.GENETIC_ENTITY_ID=g.GENETIC_ENTITY_ID", (ResultSet rs) -> { - TestGeneticAlteration line = new TestGeneticAlteration(); - line.geneticProfileId = rs.getInt("GENETIC_PROFILE_ID"); - line.geneticEntityId = rs.getInt("GENETIC_ENTITY_ID"); - line.values = rs.getString("VALUES"); - line.hugoGeneSymbol = rs.getString("HUGO_GENE_SYMBOL"); - return line; - }); - } - - private TestGeneticAlteration getGeneticAlterationByEntrez(long entrezId) throws DaoException { - return runSelectQuery("SELECT ga.GENETIC_PROFILE_ID, ga.GENETIC_ENTITY_ID, ga.VALUES, g.HUGO_GENE_SYMBOL " + - "FROM genetic_alteration AS ga " + - "RIGHT JOIN gene AS g " + - "ON g.GENETIC_ENTITY_ID = ga.GENETIC_ENTITY_ID " + - "WHERE g.ENTREZ_GENE_ID=" + entrezId, - (ResultSet rs) -> { - TestGeneticAlteration line = new TestGeneticAlteration(); - line.geneticProfileId = rs.getInt("GENETIC_PROFILE_ID"); - line.geneticEntityId = rs.getInt("GENETIC_ENTITY_ID"); - line.values = rs.getString("VALUES"); - line.hugoGeneSymbol = rs.getString("HUGO_GENE_SYMBOL"); - return line; - }).get(0); - } - - private TestGeneticProfileSample getGeneticProfileSample(long profileId) throws DaoException { - return runSelectQuery( - "SELECT * FROM genetic_profile_samples WHERE GENETIC_PROFILE_ID=" + profileId, - (ResultSet rs) -> { - TestGeneticProfileSample line = new TestGeneticProfileSample(); - line.geneticProfileId = rs.getInt("GENETIC_PROFILE_ID"); - line.orderedSampleList = rs.getString("ORDERED_SAMPLE_LIST"); - return line; - }).get(0); - } - - private String getSampleStableIdFromInternalId(Integer internalSampleId) throws DaoException { - return runSelectQuery( - "select STABLE_ID from sample where INTERNAL_ID = " + internalSampleId, - (ResultSet rs) -> rs.getString("STABLE_ID") - ).get(0); - } - - private List runSelectQuery(String query, FunctionThrowsSql handler) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - List result = new ArrayList<>(); - try { - con = JdbcUtil.getDbConnection(DaoGeneticAlteration.class); - pstmt = con.prepareStatement(query); - rs = pstmt.executeQuery(); - while (rs.next()) { - result.add(handler.apply(rs)); - } - return result; - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGeneticAlteration.class, con, pstmt, rs); - } - } - -} - -class TestGeneticAlteration { - public int geneticProfileId; - public int geneticEntityId; - public String values; - public String hugoGeneSymbol; -} - -class TestGeneticProfileSample { - public int geneticProfileId; - public String orderedSampleList; -} - -class TestPdAnnotationPK { - public long alterationEventId; - public int sampleId; - public int geneticProfileId; -} - -class TestPdAnnotation { - public TestPdAnnotationPK pk; - public String driverTiersFilterAnnotation; - public String driverTiersFilter; - public String driverFilterAnnotation; - public String driverFilter; -} - -@FunctionalInterface -interface FunctionThrowsSql { - R apply(T t) throws SQLException; -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCopyNumberSegmentData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCopyNumberSegmentData.java deleted file mode 100644 index dc8e4239385..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportCopyNumberSegmentData.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileNotFoundException; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.List; - -import org.junit.Before; -import org.junit.Rule; -import org.junit.Test; -import org.junit.rules.ExpectedException; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoPatient; -import org.mskcc.cbio.portal.dao.DaoSample; -import org.mskcc.cbio.portal.dao.MySQLbulkLoader; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.Patient; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.ApplicationContext; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * Test the import of Segment data into database. - * @author pieterlukasse - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportCopyNumberSegmentData { - - @Autowired - ApplicationContext applicationContext; - - //To use in test cases where we expect an exception: - @Rule - public ExpectedException exception = ExpectedException.none(); - - - @Before - public void setUp() throws DaoException - { - //set it, to avoid this being set to the runtime (not for testing) application context: - SpringUtil.setApplicationContext(applicationContext); - } - - /** - * Test importing of Clinical Data File. - * - * @throws DaoException Database Access Error. - * @throws IOException IO Error. - */ - @Test - public void testImportSegmentDataNewStudy() throws Exception { - //new dummy study to simulate importing clinical data in empty study: - CancerStudy cancerStudy = new CancerStudy("testnewseg","testnewseg","testnewseg","brca",true); - cancerStudy.setReferenceGenome("hg19"); - DaoCancerStudy.addCancerStudy(cancerStudy); - addTestPatientAndSampleRecords(new File("src/test/resources/segment/data_cna_hg19.seg"), cancerStudy); - - String[] args = { - "--data","src/test/resources/segment/data_cna_hg19.seg", - "--meta","src/test/resources/segment/meta_cna_hg19_seg.txt", - "--loadMode", "bulkLoad" - }; - ImportCopyNumberSegmentData runner = new ImportCopyNumberSegmentData(args); - runner.run(); - //TODO : fix test to actually store data and add some checks - - } - - private void addTestPatientAndSampleRecords(File file, CancerStudy cancerStudy) throws FileNotFoundException, IOException, DaoException { - // extract sample ids from first column - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine(); // want to skip first line / header line - List sampleIds = new ArrayList<>(); - while ((line=buf.readLine()) != null) { - String[] parts = line.split("\t"); - if (!sampleIds.contains(parts[0])) { - sampleIds.add(parts[0]); - } - } - reader.close(); - // add sample + patient records to db - for (String sampleId : sampleIds) { - // fetch patient from db or add new one if does not exist - Patient p = DaoPatient.getPatientByCancerStudyAndPatientId(cancerStudy.getInternalId(), sampleId); - Integer pId = (p == null) ? DaoPatient.addPatient(new Patient(cancerStudy, sampleId)) : p.getInternalId(); - DaoSample.addSample(new Sample(sampleId, pId, cancerStudy.getTypeOfCancerId())); - } - MySQLbulkLoader.flushAll(); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportExtendedMutationData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportExtendedMutationData.java deleted file mode 100644 index f2bccbab5c8..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportExtendedMutationData.java +++ /dev/null @@ -1,392 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static com.google.common.collect.Sets.newHashSet; -import static org.junit.Assert.*; - -import java.io.*; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.ApplicationContext; - -/** - * @author Arthur Goldberg goldberg@cbio.mskcc.org - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/integrationTestScript.xml", "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportExtendedMutationData { - - @Autowired - private ApplicationContext applicationContext; - - int studyId; - int geneticProfileId; - int testGeneticProfileId; - @Before - public void setUp() throws DaoException { - studyId = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub").getInternalId(); - - DaoGeneticProfile.reCache(); - DaoSample.reCache(); - DaoPatient.reCache(); - // create test genetic profile - GeneticProfile geneticProfile = new GeneticProfile(); - geneticProfile.setCancerStudyId(studyId); - geneticProfile.setProfileName("test profile"); - geneticProfile.setStableId("test"); - geneticProfile.setGeneticAlterationType(GeneticAlterationType.MUTATION_EXTENDED); - geneticProfile.setDatatype("test"); - DaoGeneticProfile.addGeneticProfile(geneticProfile); - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("test").getGeneticProfileId(); - - // create test genetic profile for shared mutation events test - GeneticProfile geneticProfile2 = new GeneticProfile(); - geneticProfile2.setCancerStudyId(studyId); - geneticProfile2.setProfileName("test duplicate mutation events profile"); - geneticProfile2.setStableId("test_importer_id"); - geneticProfile2.setGeneticAlterationType(GeneticAlterationType.MUTATION_EXTENDED); - geneticProfile2.setDatatype("test"); - DaoGeneticProfile.addGeneticProfile(geneticProfile2); - testGeneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("test_importer_id").getGeneticProfileId(); - - ProgressMonitor.setConsoleMode(false); - loadGenes(); - } - - @Test - public void testImportExtendedMutationDataExtended() throws IOException, DaoException { - - MySQLbulkLoader.bulkLoadOn(); - - // TBD: change this to use getResourceAsStream() - File file = new File("src/test/resources/data_mutations_extended.txt"); - ImportExtendedMutationData parser = new ImportExtendedMutationData(file, geneticProfileId, null); - parser.importData(); - MySQLbulkLoader.flushAll(); - ConsoleUtil.showMessages(); - - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - - checkBasicFilteringRules(); - checkMutationCounts(); - - // accept everything else - validateMutationAminoAcid(geneticProfileId, sampleId, 51806, "P113L"); // valid Unknown - validateMutationAminoAcid(geneticProfileId, sampleId, 89, "S116R"); // Unknown Somatic - } - - /** - * Check that import of oncotated data works - * @throws IOException - * @throws DaoException - */ - @Test - public void testImportExtendedMutationDataOncotated() throws IOException, DaoException { - File file = new File("src/test/resources/data_mutations_oncotated.txt"); - ImportExtendedMutationData parser = new ImportExtendedMutationData(file, geneticProfileId, null); - parser.importData(); - MySQLbulkLoader.flushAll(); - - ArrayList mutationList = DaoMutation.getAllMutations(geneticProfileId); - - // assert table size; 3 silent mutations should be rejected - assertEquals(17, mutationList.size()); - - // assert data for oncotator columns - //assertEquals("FAM90A1", mutationList.get(0).getGeneSymbol()); - //assertEquals("Missense_Mutation", mutationList.get(1).getOncotatorVariantClassification()); - //assertEquals("p.R131H", mutationList.get(4).getOncotatorProteinChange()); - //assertEquals("rs76360727;rs33980232", mutationList.get(9).getOncotatorDbSnpRs()); - //assertEquals("p.E366_Q409del(13)|p.Q367R(1)|p.E366_K477del(1)", - //mutationList.get(15).getOncotatorCosmicOverlapping()); - } - /** - * Tests custom filtering mutation types option (filtering for missense and nonsensemutations). - * @throws IOException - * @throws DaoException - */ - @Test - public void testImportExtendedMutationDataExtendedCustomFiltering() throws IOException, DaoException { - - MySQLbulkLoader.bulkLoadOn(); - - File file = new File("src/test/resources/data_mutations_extended.txt"); - Set customFiltering = new HashSet(Arrays.asList("Missense_Mutation", "Nonsense_Mutation")); - ImportExtendedMutationData parser = new ImportExtendedMutationData(file, geneticProfileId, null, customFiltering, null); - parser.importData(); - MySQLbulkLoader.flushAll(); - ConsoleUtil.showMessages(); - - rejectMissenseAndNonsenseMutations(); - } - - /** - * Tests custom filtering mutation types option (no filtering at all). - * @throws IOException - * @throws DaoException - */ - @Test - public void testImportExtendedMutationDataExtendedNoFiltering() throws IOException, DaoException { - - MySQLbulkLoader.bulkLoadOn(); - - File file = new File("src/test/resources/data_mutations_extended.txt"); - Set customFiltering = new HashSet(Arrays.asList("")); - ImportExtendedMutationData parser = new ImportExtendedMutationData(file, geneticProfileId, null, customFiltering, null); - parser.importData(); - MySQLbulkLoader.flushAll(); - ConsoleUtil.showMessages(); - - acceptAllMutationTypes(); - } - - private void checkBasicFilteringRules() throws DaoException { - rejectSilentLOHIntronWildtype(); - acceptValidSomaticMutations(); - } - - private void validateMutationAminoAcid (int geneticProfileId, Integer sampleId, long entrezGeneId, - String expectedAminoAcidChange) throws DaoException { - ArrayList mutationList = DaoMutation.getMutations - (geneticProfileId, sampleId, entrezGeneId); - assertEquals(1, mutationList.size()); - assertEquals(expectedAminoAcidChange, mutationList.get(0).getProteinChange()); - } - - private void acceptValidSomaticMutations() throws DaoException { - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - - // valid Somatic - validateMutationAminoAcid (geneticProfileId, sampleId, 282770, "R113C"); - - // valid Somatic - validateMutationAminoAcid (geneticProfileId, sampleId, 51259, "G61G"); - } - - private void rejectSilentLOHIntronWildtype() throws DaoException { - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 114548).size()); // silent - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 343035).size()); // LOH - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 80114).size()); // Wildtype - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 219736).size()); // Wildtype - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 6609).size()); // Intron - } - - - private void checkGermlineMutations() throws DaoException { - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - - assertEquals(1, DaoMutation.getMutations(geneticProfileId, sampleId, 64581).size()); - // missense, Germline mutation on germline whitelist - - // Germline mutation on germline whitelist - validateMutationAminoAcid (geneticProfileId, sampleId, 2842, "L113P"); - assertEquals(1, DaoMutation.getMutations(geneticProfileId, sampleId, 50839).size()); - // Germline mutations NOT on germline whitelist - } - - private void checkMutationCounts() throws DaoException { - - String studyStableId = "study_tcga_pub"; - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyStableId); - - // assume clinical data for MUTATION_COUNT was created - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum("MUTATION_COUNT", study.getInternalId()); - assertNotNull(clinicalAttribute); - - List clinicalData = DaoClinicalData.getSampleData(study.getInternalId(), new ArrayList(Arrays.asList("TCGA-AA-3664-01")), clinicalAttribute); - assert(clinicalData.size() == 1); - assertEquals("8", clinicalData.get(0).getAttrVal()); - } - - private void loadGenes() throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - // genes for "data_mutations_extended.txt" - daoGene.addGene(new CanonicalGene(114548L, "NLRP3")); - daoGene.addGene(new CanonicalGene(3339L, "HSPG2")); - daoGene.addGene(new CanonicalGene(282770L, "OR10AG1")); - daoGene.addGene(new CanonicalGene(51806L, "CALML5")); - daoGene.addGene(new CanonicalGene(343035L, "RD3")); - daoGene.addGene(new CanonicalGene(80114L, "BICC1")); - daoGene.addGene(new CanonicalGene(219736L, "STOX1")); - daoGene.addGene(new CanonicalGene(6609L, "SMPD1")); - daoGene.addGene(new CanonicalGene(51259L, "TMEM216")); - daoGene.addGene(new CanonicalGene(89L, "ACTN3")); - daoGene.addGene(new CanonicalGene(64581L, "CLEC7A")); - daoGene.addGene(new CanonicalGene(50839L, "TAS2R10")); - daoGene.addGene(new CanonicalGene(54407L, "SLC38A2")); - daoGene.addGene(new CanonicalGene(6667L, "SP1")); - daoGene.addGene(new CanonicalGene(2842L, "GPR19")); - - - - // additional genes for "data_mutations_oncotated.txt" - daoGene.addGene(new CanonicalGene(55138L, "FAM90A1")); - daoGene.addGene(new CanonicalGene(10628L, "TXNIP")); - daoGene.addGene(new CanonicalGene(80343, "SEL1L2")); - daoGene.addGene(new CanonicalGene(29102L, "DROSHA")); - daoGene.addGene(new CanonicalGene(7204L, "TRIO")); - daoGene.addGene(new CanonicalGene(57111L, "RAB25")); - daoGene.addGene(new CanonicalGene(773L, "CACNA1A")); - daoGene.addGene(new CanonicalGene(100132025L, "LOC100132025")); - daoGene.addGene(new CanonicalGene(1769L, "DNAH8")); - daoGene.addGene(new CanonicalGene(343171L, "OR2W3")); - daoGene.addGene(new CanonicalGene(2901L, "GRIK5")); - daoGene.addGene(new CanonicalGene(10568L, "SLC34A2")); - daoGene.addGene(new CanonicalGene(140738L, "TMEM37")); - daoGene.addGene(new CanonicalGene(94025L, "MUC16")); - daoGene.addGene(new CanonicalGene(1915L, "EEF1A1")); - daoGene.addGene(new CanonicalGene(65083L, "NOL6")); - daoGene.addGene(new CanonicalGene(7094L, "TLN1")); - daoGene.addGene(new CanonicalGene(51196L, "PLCE1")); - daoGene.addGene(new CanonicalGene(1952L, "CELSR2")); - daoGene.addGene(new CanonicalGene(2322L, "FLT3")); - daoGene.addGene(new CanonicalGene(867L, "CBL")); - - MySQLbulkLoader.flushAll(); - } - - /** - * Loads the study context (defined samples) for specific test data files. - * - * @throws DaoException if failing to write to the database - */ - private void loadStudyContext1() throws DaoException { - CancerStudy study = DaoCancerStudy.getCancerStudyByInternalId(studyId); - int pId; - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A04T")); - DaoSample.addSample(new Sample("TCGA-A2-A04T-01", pId, "brca")); - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A0CR")); - DaoSample.addSample(new Sample("TCGA-A2-A0CR-01", pId, "brca")); - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A0CW")); - DaoSample.addSample(new Sample("TCGA-A2-A0CW-01", pId, "brca")); - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A0D3")); - DaoSample.addSample(new Sample("TCGA-A2-A0D3-01", pId, "brca")); - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A0SY")); - DaoSample.addSample(new Sample("TCGA-A2-A0SY-01", pId, "brca")); - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A0T5")); - DaoSample.addSample(new Sample("TCGA-A2-A0T5-01", pId, "brca")); - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A25D")); - DaoSample.addSample(new Sample("TCGA-A2-A25D-01", pId, "brca")); - pId = DaoPatient.addPatient(new Patient(study, "TCGA-A2-A4RW")); - DaoSample.addSample(new Sample("TCGA-A2-A4RW-01", pId, "brca")); - } - - private void rejectMissenseAndNonsenseMutations() throws DaoException { - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 63967).size()); // Missense - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 79699).size()); // Missense - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 204219).size()); // Missense - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 51259).size()); // Nonsense - assertEquals(0, DaoMutation.getMutations(geneticProfileId, sampleId, 84902).size()); // Nonsense - } - - private void acceptAllMutationTypes() throws DaoException { - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - - // valid Nonsense - validateMutationAminoAcid (geneticProfileId, sampleId, 2842, "L113P"); - - // valid Silent - validateMutationAminoAcid (geneticProfileId, sampleId, 114548, "G982G"); - } - - /** - * Test to confirm that 2 identical mutation events from 2 samples still point to the same - * mutation event despite unique constraint on `mutation_event`. - * @throws IOException - * @throws DaoException - */ - @Test - public void testImportExtendedMutationDataExtendedWithSharedMutationEvent() throws IOException, DaoException { - // import maf - MySQLbulkLoader.bulkLoadOn(); - File file = new File("src/test/resources/data_mutations_extended_duplicate_events.txt"); - ImportExtendedMutationData parser = new ImportExtendedMutationData(file, testGeneticProfileId, null); - parser.importData(); - MySQLbulkLoader.flushAll(); - ConsoleUtil.showMessages(); - // fetch mutations for test genetic profile - int geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("test_importer_id").getGeneticProfileId(); - List mutations = DaoMutation.getAllMutations(geneticProfileId); - // there are 2 identical mutation records from 2 different samples in test MAF - // verify that only one mutation event is associated with these samples - assertEquals(2, mutations.size()); - Set events = new HashSet<>(); - for (ExtendedMutation mut : mutations) { - events.add(mut.getMutationEventId()); - } - assertEquals(1, events.size()); - } - - @Test - public void testImportExtendedMutationDataExtendedWithoutNamespacesResultsInNull() throws IOException, DaoException { - // import maf - MySQLbulkLoader.bulkLoadOn(); - File file = new File("src/test/resources/data_mutations_extended_without_namespaces.txt"); - ImportExtendedMutationData parser = new ImportExtendedMutationData( - file, testGeneticProfileId, null, null, newHashSet("foo-namespace", "bar-namespace") - ); - parser.importData(); - MySQLbulkLoader.flushAll(); - ConsoleUtil.showMessages(); - // fetch mutations for test genetic profile - int geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("test_importer_id").getGeneticProfileId(); - List mutations = DaoMutation.getAllMutations(geneticProfileId); - - assertEquals(1, mutations.size()); - - assertNull(mutations.get(0).getAnnotationJson()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGeneData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGeneData.java deleted file mode 100644 index b228cfe2d40..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGeneData.java +++ /dev/null @@ -1,82 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Test; -import org.junit.runner.RunWith; - -import static org.junit.Assert.assertEquals; - -import java.io.File; - -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.DaoReferenceGenomeGene; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ReferenceGenome; -import org.mskcc.cbio.portal.model.ReferenceGenomeGene; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * JUnit tests for ImportGeneData class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportGeneData { - - @Test - /* - * Checks that ImportGeneData works by calculating the length from three genes - * in genes_test.txt. The file genes_test.txt contains real data. - */ - public void testImportGeneData() throws Exception { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - ProgressMonitor.setConsoleMode(false); - - File file = new File("src/test/resources/genes_test.txt"); - ImportGeneData.importData(file, "GRCh37"); - - CanonicalGene gene = daoGene.getGene(10); - assertEquals("NAT2", gene.getHugoGeneSymbolAllCaps()); - gene = daoGene.getGene(15); - assertEquals("AANAT", gene.getHugoGeneSymbolAllCaps()); - - gene = daoGene.getGene("ABCA3"); - assertEquals(21, gene.getEntrezGeneId()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenericAssayData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenericAssayData.java deleted file mode 100644 index 27260663657..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenericAssayData.java +++ /dev/null @@ -1,146 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Pim van Nierop, pim@thehyve.nl -*/ - -package org.mskcc.cbio.portal.scripts; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNotNull; - -import java.io.File; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; - -import org.cbioportal.model.EntityType; -import org.cbioportal.model.meta.GenericAssayMeta; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoGenericAssay; -import org.mskcc.cbio.portal.dao.DaoGeneticEntity; -import org.mskcc.cbio.portal.dao.JdbcUtil; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/* - * JUnit tests for ImportTreatmentData class. -*/ - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportGenericAssayData { - - @Test - public void testImportTreatmentData() throws Exception { - - ProgressMonitor.setConsoleMode(false); - - // Open genesets test data file - File file = new File("src/test/resources/treatments/data_treatment_ic50.txt"); - - // import data and test all treatments were added - ImportGenericAssayEntity.importData(file, GeneticAlterationType.GENERIC_ASSAY, "NAME,DESCRIPTION,URL", true); - assertEquals(10, getNumRecordsForGenericAssay()); - - // test wether a record can be retrieved via stable id - GenericAssayMeta treatment1 = DaoGenericAssay.getGenericAssayMetaByStableId("Irinotecan"); - assertNotNull(treatment1); - - // Test whether fields were populated correctly - assertEquals("Name of Irinotecan", treatment1.getGenericEntityMetaProperties().get("NAME")); - assertEquals("Desc of Irinotecan", treatment1.getGenericEntityMetaProperties().get("DESCRIPTION")); - assertEquals("Url of Irinotecan", treatment1.getGenericEntityMetaProperties().get("URL")); - - // test fields are updated after loading new treatment file - File fileNewDesc = new File("src/test/resources/treatments/data_treatment_ic50_newdesc.txt"); - ImportGenericAssayEntity.importData(fileNewDesc, GeneticAlterationType.GENERIC_ASSAY, "NAME,DESCRIPTION,URL", true); - GenericAssayMeta treatment2 = DaoGenericAssay.getGenericAssayMetaByStableId("Irinotecan"); - assertEquals("New desc of Irinotecan", treatment2.getGenericEntityMetaProperties().get("DESCRIPTION")); - } - - @Test - public void testImportGenericAssayData() throws Exception { - - ProgressMonitor.setConsoleMode(false); - - // Open mutational signature test data file - File file = new File("src/test/resources/data_mutational_signature.txt"); - - // import data and test all mutational signatures were added - ImportGenericAssayEntity.importData(file, GeneticAlterationType.GENERIC_ASSAY, "name,description", false); - assertEquals(60, getNumRecordsForGenericAssay()); - - // test wether a record can be retrieved via stable id - GenericAssayMeta genericAssayMeta1 = DaoGenericAssay.getGenericAssayMetaByStableId("mean_1"); - assertNotNull(genericAssayMeta1); - - // Test whether fields were populated correctly - assertEquals("mean_1", genericAssayMeta1.getGenericEntityMetaProperties().get("name")); - assertEquals("mean_1", genericAssayMeta1.getGenericEntityMetaProperties().get("description")); - - // // test fields should not be updated after loading new generic assay meta file - File fileNewDesc = new File("src/test/resources/data_mutational_signature_new.txt"); - ImportGenericAssayEntity.importData(fileNewDesc, GeneticAlterationType.GENERIC_ASSAY, "name,description", false); - GenericAssayMeta genericAssayMeta2 = DaoGenericAssay.getGenericAssayMetaByStableId("mean_1"); - assertEquals("mean_1", genericAssayMeta2.getGenericEntityMetaProperties().get("description")); - - // // test fields should be updated after loading new generic assay meta file - ImportGenericAssayEntity.importData(fileNewDesc, GeneticAlterationType.GENERIC_ASSAY, "name,description", true); - GenericAssayMeta genericAssayMeta3 = DaoGenericAssay.getGenericAssayMetaByStableId("mean_1"); - assertEquals("new mean_1", genericAssayMeta3.getGenericEntityMetaProperties().get("description")); - - } - - private int getNumRecordsForGenericAssay() { - - Connection con = null; - PreparedStatement stat = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(DaoGeneticEntity.class); - stat = con.prepareStatement("SELECT COUNT(*) FROM genetic_entity WHERE ENTITY_TYPE = 'GENERIC_ASSAY'"); - rs = stat.executeQuery(); - if (rs.next()) { - return rs.getInt(1); - } - return 0; - } catch (SQLException e) { - System.out.println(e.getStackTrace()); - } finally { - JdbcUtil.closeAll(DaoGeneticEntity.class, con, stat, rs); - } - - return 0; - } - -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenericAssayPatientLevelData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenericAssayPatientLevelData.java deleted file mode 100644 index f3f382a83a2..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenericAssayPatientLevelData.java +++ /dev/null @@ -1,177 +0,0 @@ -/* - * Copyright (c) 2021 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.BufferedReader; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.cbioportal.model.GeneticEntity; -import org.mskcc.cbio.portal.util.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.File; -import java.io.FileNotFoundException; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Set; - -/** - * JUnit tests for ImportGenericAssayPatientLevelData class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportGenericAssayPatientLevelData { - - private int studyId; - private int geneticProfileId; - private int sample1; - private int sample2; - private int sample3; - private CancerStudy study; - private GeneticEntity geneticEntity1; - private GeneticEntity geneticEntity2; - - @Before - public void setUp() throws DaoException { - DaoCancerStudy.reCacheAll(); - DaoGeneOptimized.getInstance().reCache(); - ProgressMonitor.resetWarnings(); - - study = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - studyId =study.getInternalId(); - - GeneticProfile newGeneticProfile = new GeneticProfile(); - newGeneticProfile.setCancerStudyId(studyId); - newGeneticProfile.setGeneticAlterationType(GeneticAlterationType.GENERIC_ASSAY); - newGeneticProfile.setStableId("study_tcga_pub_generic_assay_patient_test"); - newGeneticProfile.setProfileName("Generic Assay Patient Level data"); - newGeneticProfile.setDatatype("LIMIT-VALUE"); - newGeneticProfile.setPatientLevel(true); - DaoGeneticProfile.addGeneticProfile(newGeneticProfile); - - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_generic_assay_patient_test").getGeneticProfileId(); - - sample1 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SB-01").getInternalId(); - sample2 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SB-02").getInternalId(); - sample3 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SD-01").getInternalId(); - - geneticEntity1 = new GeneticEntity("GENERIC_ASSAY", "test_patient_generic_assay_1"); - geneticEntity1 = DaoGeneticEntity.addNewGeneticEntity(geneticEntity1); - DaoGenericAssay.setGenericEntityProperty(geneticEntity1.getId(), "name", "test_patient_generic_assay_1"); - DaoGenericAssay.setGenericEntityProperty(geneticEntity1.getId(), "description", "test_patient_generic_assay_1"); - geneticEntity2 = new GeneticEntity("GENERIC_ASSAY", "test_patient_generic_assay_2"); - geneticEntity2 = DaoGeneticEntity.addNewGeneticEntity(geneticEntity2); - DaoGenericAssay.setGenericEntityProperty(geneticEntity2.getId(), "name", "test_patient_generic_assay_2"); - DaoGenericAssay.setGenericEntityProperty(geneticEntity2.getId(), "description", "test_patient_generic_assay_2"); - } - - /** - * Test importing of data_patient_generic_assay.txt file. - * @throws Exception All Errors. - */ - @Test - public void testImportGenericAssayPatientLevelDataBulkLoadOff() throws Exception { - - MySQLbulkLoader.bulkLoadOff(); - runImportGenericAssayPatientLevelData(); - } - - /** - * Test importing of data_patient_generic_assay.txt file. - * @throws Exception All Errors. - */ - @Test - public void testImportGenericAssayPatientLevelDataBulkLoadOn() throws Exception { - MySQLbulkLoader.bulkLoadOn(); - runImportGenericAssayPatientLevelData(); - } - - private void runImportGenericAssayPatientLevelData() throws DaoException, IOException{ - - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - - ProgressMonitor.setConsoleMode(false); - - File file = new File("src/test/resources/tabDelimitedData/data_patient_generic_assay.txt"); - ImportGenericAssayPatientLevelData parser = new ImportGenericAssayPatientLevelData(file, null, geneticProfileId, null, "name,description"); - - int numLines = FileUtil.getNumLines(file); - parser.importData(numLines); - - HashMap> geneticAlterationMap = daoGeneticAlteration.getGeneticAlterationMapForEntityIds(geneticProfileId, Arrays.asList(geneticEntity1.getId(), geneticEntity2.getId())); - - HashMap geneticAlterationMapForEntity1 = geneticAlterationMap.get(geneticEntity1.getId()); - String value = geneticAlterationMapForEntity1.get(sample1); - assertEquals ("0.370266873", value); - value = geneticAlterationMapForEntity1.get(sample2); - assertEquals ("0.370266873", value); - value = geneticAlterationMapForEntity1.get(sample3); - assertEquals ("0.010373016", value); - HashMap geneticAlterationMapForEntity2 = geneticAlterationMap.get(geneticEntity2.getId()); - value = geneticAlterationMapForEntity2.get(sample1); - assertEquals ("0.002709404", value); - value = geneticAlterationMapForEntity2.get(sample2); - assertEquals ("0.002709404", value); - value = geneticAlterationMapForEntity2.get(sample3); - assertEquals ("0.009212318", value); - - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "TCGA-A1-A0SB"); - Sample sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-A1-A0SB-01"); - assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)); - sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-A1-A0SB-02"); - assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)); - - patient = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "TCGA-A1-A0SD"); - sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-A1-A0SD-01"); - assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)); - - ArrayList caseIds = DaoSampleProfile.getAllSampleIdsInProfile(geneticProfileId); - assertEquals(3, caseIds.size()); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenesetData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenesetData.java deleted file mode 100644 index b5934081148..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenesetData.java +++ /dev/null @@ -1,103 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Test; -import org.junit.runner.RunWith; - -import static org.junit.Assert.assertEquals; - -import java.io.File; - -import org.mskcc.cbio.portal.dao.DaoGeneset; -import org.mskcc.cbio.portal.model.Geneset; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/* - * JUnit tests for ImportGenesetData class. -*/ - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportGenesetData { - - @Test - public void testImportGenesetData() throws Exception { - ProgressMonitor.setConsoleMode(false); - - // Open genesets test data file - File file = new File("src/test/resources/genesets/unit-test1_genesets.gmt"); - boolean updateInfo = false; - boolean newVersion = true; - int skippedGenes = ImportGenesetData.importData(file, updateInfo, newVersion); - - // Open supplementary file - file = new File("src/test/resources/genesets/unit-test1_supp-genesets.txt"); - ImportGenesetData.importSuppGenesetData(file); - - // Test database entries - Geneset geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET5"); - assertEquals("UNITTEST_GENESET5", geneset.getExternalId()); - geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET10"); - assertEquals("http://www.broadinstitute.org/gsea/msigdb/cards/GCNP_SHH_UP_EARLY.V1_UP", geneset.getRefLink()); - - // Test warning message - assertEquals(5, skippedGenes); - - // Test database entries supplementary file - geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET2"); - assertEquals("Genes up-regulated in RK3E cells (kidney epithelium) over-expressing GLI1 [GeneID=2735].", geneset.getDescription()); - geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET8"); - assertEquals("UNITTEST_GENESET8", geneset.getName()); - - // Test update of genes - // Open genesets test data file - file = new File("src/test/resources/genesets/unit-test2_genesets.gmt"); - newVersion = false; - updateInfo = true; - skippedGenes = ImportGenesetData.importData(file, updateInfo, newVersion); - - // Open supplementary file - file = new File("src/test/resources/genesets/unit-test2_supp-genesets.txt"); - ImportGenesetData.importSuppGenesetData(file); - - geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET2"); - assertEquals("A made up description is suited for this a fake gene.", geneset.getDescription()); - geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET1"); - assertEquals("Thought of new nice name for this geneset", geneset.getName()); - geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET1"); - assertEquals("http://www.thehyve.nl/", geneset.getRefLink()); - - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenesetHierarchyData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenesetHierarchyData.java deleted file mode 100644 index 67e880077f5..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportGenesetHierarchyData.java +++ /dev/null @@ -1,136 +0,0 @@ -/* - * Copyright (c) 2017 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Test; -import org.junit.runner.RunWith; - -import static org.junit.Assert.assertEquals; - -import java.io.File; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.List; - -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneset; -import org.mskcc.cbio.portal.dao.DaoGenesetHierarchyNode; -import org.mskcc.cbio.portal.dao.DaoGenesetHierarchyLeaf; -import org.mskcc.cbio.portal.dao.JdbcUtil; -import org.mskcc.cbio.portal.model.Geneset; -import org.mskcc.cbio.portal.model.GenesetHierarchy; -import org.mskcc.cbio.portal.model.GenesetHierarchyLeaf; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/* - * JUnit tests for ImportGenesetData class. -*/ - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportGenesetHierarchyData { - - @Test - public void testImportGenesetHierarchyData() throws Exception { - ProgressMonitor.setConsoleMode(false); - - File file = new File("src/test/resources/genesets/unit-test-geneset-hierarchy_genesets.gmt"); - - boolean updateInfo = false; - boolean newVersion = true; - int skippedGenes = ImportGenesetData.importData(file, updateInfo, newVersion); - - file = new File("src/test/resources/genesets/unit-test-geneset-hierarchy_tree.yaml"); - boolean validate = false; - ImportGenesetHierarchy.importData(file, validate); - - // Test database entries - - // Get geneset id - Geneset geneset = DaoGeneset.getGenesetByExternalId("UNITTEST_GENESET8"); - - // Get parent node id from genesetHierarchyLeaf - List genesetHierarchyLeafs = DaoGenesetHierarchyLeaf.getGenesetHierarchyLeafsByGenesetId(geneset.getId()); - - // Select the first and only gene set - GenesetHierarchyLeaf genesetHierarchyLeaf = genesetHierarchyLeafs.get(0); - - // Get node name from genesetHierarchy - GenesetHierarchy genesetHierarchy = getGenesetHierarchyFromNodeId(genesetHierarchyLeaf.getNodeId()); - - // Check if node name is as expected - assertEquals("Institutes Subcategory 2", genesetHierarchy.getNodeName()); - } - - /** - * Retrieve gene set hierarchy objects from geneset_hierarchy_node table in database. - * THis - * @throws DaoException - */ - public static GenesetHierarchy getGenesetHierarchyFromNodeId(int nodeId) throws DaoException { - Connection connection = null; - PreparedStatement preparedStatement = null; - ResultSet resultSet = null; - - try { - // Open connection to database - connection = JdbcUtil.getDbConnection(DaoGenesetHierarchyNode.class); - - // Prepare SQL statement - preparedStatement = connection.prepareStatement("SELECT * FROM geneset_hierarchy_node WHERE NODE_ID = ?"); - preparedStatement.setInt(1, nodeId); - - // Execute statement - resultSet = preparedStatement.executeQuery(); - - // Extract genesetHierarchy values - if (resultSet.next()) { - GenesetHierarchy genesetHierarchy = new GenesetHierarchy(); - genesetHierarchy.setNodeId(resultSet.getInt("NODE_ID")); - genesetHierarchy.setNodeName(resultSet.getString("NODE_NAME")); - genesetHierarchy.setParentId(resultSet.getInt("PARENT_ID")); - return genesetHierarchy; - } - - return null; - - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(DaoGenesetHierarchyNode.class, connection, preparedStatement, resultSet); - } - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportProfileData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportProfileData.java deleted file mode 100644 index 2a0b0be85ed..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportProfileData.java +++ /dev/null @@ -1,566 +0,0 @@ -/* - * Copyright (c) 2016 - 2022 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNotEquals; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertNull; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; -import java.util.List; - -import org.junit.After; -import org.junit.Before; -import org.junit.Rule; -import org.junit.Test; -import org.junit.rules.ExpectedException; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoClinicalAttributeMeta; -import org.mskcc.cbio.portal.dao.DaoClinicalData; -import org.mskcc.cbio.portal.dao.DaoCnaEvent; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.dao.DaoMutation; -import org.mskcc.cbio.portal.dao.DaoPatient; -import org.mskcc.cbio.portal.dao.DaoSample; -import org.mskcc.cbio.portal.dao.DaoSampleProfile; -import org.mskcc.cbio.portal.dao.DaoStructuralVariant; -import org.mskcc.cbio.portal.dao.MySQLbulkLoader; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.mskcc.cbio.portal.model.ClinicalData; -import org.mskcc.cbio.portal.model.CnaEvent; -import org.mskcc.cbio.portal.model.ExtendedMutation; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.Patient; -import org.mskcc.cbio.portal.model.Sample; -import org.mskcc.cbio.portal.model.StructuralVariant; - -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * @author Pieter Lukasse pieter@thehyve.nl - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportProfileData { - - int studyId; - int geneticProfileId; - - @Before - public void setUp() throws DaoException { - ProgressMonitor.setConsoleMode(false); - loadGenes(); - } - - @After - public void cleanUp() throws DaoException { - // each test assumes the mutation data hasn't been loaded yet - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_breast_mutations"); - if (geneticProfile != null) { - DaoGeneticProfile.deleteGeneticProfile(geneticProfile); - assertNull(DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_breast_mutations")); - } - geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_sv"); - if (geneticProfile != null) { - DaoGeneticProfile.deleteGeneticProfile(geneticProfile); - assertNull(DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_sv")); - } - } - - @Rule - public ExpectedException exception = ExpectedException.none(); - - @Test - public void testImportMutationsFile() throws Exception { - /* - * Complex test where we import a mutations file split over two data - * files. The data includes germline mutations as well as silent - * mutations. We make sure the nonsynonymous somatic and germline - * mutations are added to the databases and the MUTATION_COUNT clinical - * attributes are correctly computed. - */ - String[] args = { - "--data","src/test/resources/data_mutations_extended.txt", - "--meta","src/test/resources/meta_mutations_extended.txt", - "--loadMode", "bulkLoad" - }; - ImportProfileData runner = new ImportProfileData(args); - runner.run(); - - // check the study exists - String studyStableId = "study_tcga_pub"; - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyStableId); - assertNotNull(study); - studyId = study.getInternalId(); - - // Check if the ImportProfileData class indeed adds the study stable Id in front of the - //dataset study id (e.g. studyStableId + "_breast_mutations"): - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(studyStableId + "_breast_mutations"); - assertNotNull(geneticProfile); - geneticProfileId = geneticProfile.getGeneticProfileId(); - - // check the mutation T433A has been imported - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - validateMutationAminoAcid(geneticProfileId, sampleId, 54407, "T433A"); - - // data for the second sample should not exist before loading the next data file - int secondSampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3665-01").getInternalId(); - assertEquals(DaoMutation.getMutations(geneticProfileId, secondSampleId).size(), 0); - // the GENETIC_PROFILE_ID in sample_profile should be the same as the - // genetic profile that was used for import - int geneticProfileIdFromSampleProfile = DaoSampleProfile.getProfileIdForSample(sampleId); - assertEquals(geneticProfileIdFromSampleProfile, geneticProfileId); - - // assume clinical data for MUTATION_COUNT was created - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum("MUTATION_COUNT", studyId); - assertNotNull(clinicalAttribute); - - // assume a MUTATION_COUNT record has been added for the sample and the - // count is 8 there 11 total mutations imported of which 3 germline ( - // not entirely sure why the rest doesn't get imported i see some silent - // + intron, missing entrez id) - List clinicalData = DaoClinicalData.getSampleData(study.getInternalId(), new ArrayList(Arrays.asList("TCGA-AA-3664-01")), clinicalAttribute); - assert(clinicalData.size() == 1); - assertEquals("8", clinicalData.get(0).getAttrVal()); - - // load a second mutation data file - String[] secondArgs = { - "--data","src/test/resources/data_mutations_extended_continued.txt", - "--meta","src/test/resources/meta_mutations_extended.txt", - "--loadMode", "bulkLoad" - }; - ImportProfileData secondRunner = new ImportProfileData(secondArgs); - secondRunner.run(); - - // check mutation for second sample was imported - validateMutationAminoAcid(geneticProfileId, secondSampleId, 2842, "L113P"); - - // assume a MUTATION_COUNT record has been added for the sample and the - // count is 1, the other one is a germline mutation - // also confirm mutation count for first sample is still correct - clinicalData = DaoClinicalData.getSampleData(study.getInternalId(), new ArrayList(Arrays.asList("TCGA-AA-3664-01", "TCGA-AA-3665-01")), clinicalAttribute); - assert(clinicalData.size() == 2); - assertEquals("8", clinicalData.get(0).getAttrVal()); - assertEquals("1", clinicalData.get(1).getAttrVal()); - } - - @Test - public void testImportSplitMutationsFile() throws Exception { - /* - * Mutations file split over two files with same stable id. Make sure - * that the first time if a sample is in the #sequenced_samples the - * MUTATION_COUNT is 0. After importing the second file make sure the - * counts are added up i.e. mutations from both the first and second - * file should be included in the MUTATION_COUNT record. - */ - String[] args = { - "--data","src/test/resources/splitMutationsData/data_mutations_extended.txt", - "--meta","src/test/resources/splitMutationsData/meta_mutations_extended.txt", - "--loadMode", "bulkLoad" - }; - ImportProfileData runner = new ImportProfileData(args); - runner.run(); - String studyStableId = "study_tcga_pub"; - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyStableId); - studyId = study.getInternalId(); - - // assume clinical data for MUTATION_COUNT was created - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum("MUTATION_COUNT", studyId); - assertNotNull(clinicalAttribute); - - // assume a MUTATION_COUNT record has been added for both samples - List clinicalData = DaoClinicalData.getSampleData(study.getInternalId(), new ArrayList(Arrays.asList("TCGA-AA-3664-01", "TCGA-AA-3665-01")), clinicalAttribute); - assert(clinicalData.size() == 2); - assertEquals("3", clinicalData.get(0).getAttrVal()); - assertEquals("0", clinicalData.get(1).getAttrVal()); - - // load a second mutation data file - String[] secondArgs = { - "--data","src/test/resources/splitMutationsData/data_mutations_extended_continued.txt", - "--meta","src/test/resources/splitMutationsData/meta_mutations_extended.txt", - "--loadMode", "bulkLoad" - }; - ImportProfileData secondRunner = new ImportProfileData(secondArgs); - secondRunner.run(); - - // assume a MUTATION_COUNT record has been updated for both samples (both +1) - clinicalData = DaoClinicalData.getSampleData(study.getInternalId(), new ArrayList(Arrays.asList("TCGA-AA-3664-01", "TCGA-AA-3665-01")), clinicalAttribute); - assert(clinicalData.size() == 2); - assertEquals("4", clinicalData.get(0).getAttrVal()); - assertEquals("1", clinicalData.get(1).getAttrVal()); - } - - @Test - public void testImportGermlineOnlyFile() throws Exception { - /* Mutations file split over two files with same stable id */ - String[] args = { - "--data","src/test/resources/germlineOnlyMutationsData/data_mutations_extended.txt", - "--meta","src/test/resources/germlineOnlyMutationsData/meta_mutations_extended.txt", - "--loadMode", "bulkLoad" - }; - ImportProfileData runner = new ImportProfileData(args); - runner.run(); - String studyStableId = "study_tcga_pub"; - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyStableId); - studyId = study.getInternalId(); - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-AA-3664-01").getInternalId(); - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId(studyStableId + "_breast_mutations"); - geneticProfileId = geneticProfile.getGeneticProfileId(); - - // assume clinical data for MUTATION_COUNT was created - ClinicalAttribute clinicalAttribute = DaoClinicalAttributeMeta.getDatum("MUTATION_COUNT", studyId); - assertNotNull(clinicalAttribute); - - // assume a MUTATION_COUNT record has been added for one sample and the count is zero - List clinicalData = DaoClinicalData.getSampleData(study.getInternalId(), new ArrayList(Arrays.asList("TCGA-AA-3664-01")), clinicalAttribute); - assert(clinicalData.size() == 1); - assertEquals("0", clinicalData.get(0).getAttrVal()); - - // check if the three germline mutations have been inserted - validateMutationAminoAcid (geneticProfileId, sampleId, 64581, "T209A"); - validateMutationAminoAcid (geneticProfileId, sampleId, 50839, "G78S"); - validateMutationAminoAcid (geneticProfileId, sampleId, 2842, "L113P"); - - // remove profile at the end - DaoGeneticProfile.deleteGeneticProfile(geneticProfile); - assertNull(DaoGeneticProfile.getGeneticProfileByStableId(studyStableId + "_breast_mutations")); - } - - private StructuralVariant constructExpectedStructuralVariant1() { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - CanonicalGene site1Gene = daoGene.getGene("KIAA1549"); - CanonicalGene site2Gene = daoGene.getGene("BRAF"); - assertNotNull(site1Gene); - assertNotNull(site2Gene); - StructuralVariant sv = new StructuralVariant(); - sv.setInternalId(-1); // not retrieved from database DaoStructuralVariant.getAllStructuralVariants(), so no test - sv.setGeneticProfileId(-1); // internal identifier for profile is not stable, so no test - sv.setStructuralVariantId(-1); // not retrieved from database DaoStructuralVariant.getAllStructuralVariants(), so no test - sv.setSampleIdInternal(-1); // internal identifier for sample is not stable, so no test - sv.setSampleId(null);// not retrieved from database DaoStructuralVariant.getAllStructuralVariants(), so no test - sv.setSite1EntrezGeneId(site1Gene.getEntrezGeneId()); - sv.setSite1HugoSymbol(null); // not retrieved from database DaoStructuralVariant.getAllStructuralVariants(), so no test - sv.setSite1EnsemblTranscriptId("ENST00000242365"); - sv.setSite1Chromosome("7"); - sv.setSite1Position(138536968); - sv.setSite1Contig("p11.2"); - sv.setSite1Region("intron"); - sv.setSite1RegionNumber(5); - sv.setSite1Description("KIAA1549-BRAF.K16B10.COSF509_1"); - sv.setSite2EntrezGeneId(site2Gene.getEntrezGeneId()); - sv.setSite2HugoSymbol(null); // not retrieved from database DaoStructuralVariant.getAllStructuralVariants(), so no test - sv.setSite2EnsemblTranscriptId("ENST00000288602"); - sv.setSite2Chromosome("7"); - sv.setSite2Position(140482957); - sv.setSite2Contig("q14.1"); - sv.setSite2Region("exon"); - sv.setSite2RegionNumber(2); - sv.setSite2Description("KIAA1549-BRAF.K16B10.COSF509_2"); - sv.setSite2EffectOnFrame("NA"); - sv.setNcbiBuild("GRCh37"); - sv.setDnaSupport("no"); - sv.setRnaSupport("yes"); - sv.setNormalReadCount(-1); - sv.setTumorReadCount(1000); - sv.setNormalVariantCount(-1); - sv.setTumorVariantCount(900); - sv.setNormalPairedEndReadCount(-1); - sv.setTumorPairedEndReadCount(-1); - sv.setNormalSplitReadCount(-1); - sv.setTumorSplitReadCount(-1); - sv.setAnnotation("KIAA1549-BRAF.K16B10.COSF509"); - sv.setBreakpointType("NA"); - sv.setConnectionType("NA"); - sv.setEventInfo("Fusion"); - sv.setVariantClass("NA"); - sv.setLength(-1); - sv.setComments("Gain-of-Function"); - sv.setSvStatus("SOMATIC"); - sv.setDriverFilter("testdriver"); - sv.setDriverFilterAnn("testdriveranno"); - sv.setDriverTiersFilter("testdrivertiers"); - sv.setDriverTiersFilterAnn("testdrivertiersanno"); - return sv; - } - - private void registerDifference(StringBuilder response, String fieldId, T actual, T expected) { - if (actual == expected) { - return; - } - if (actual == null && expected != null) { - response.append("actual " + fieldId + " value is null, but expected value is '" + expected + "'\n"); - return; - } - if (expected == null && actual != null) { - response.append("actual " + fieldId + " value is '" + actual + "', but expected value is null" + expected + "\n"); - return; - } - if (!actual.equals(expected)) { - response.append("actual " + fieldId + " value is '" + actual + "', but expected value is '" + expected + "'\n"); - return; - } - } - - private String differenceReport(StructuralVariant actualSV, StructuralVariant expectedSV) { - StringBuilder response = new StringBuilder(); - // internalId not tested - // geneticProfileId not tested - // structuralVariantId not tested - // sampleIdInternal not tested - // sampleId not tested - registerDifference(response, "site1EntrezGeneId", actualSV.getSite1EntrezGeneId(), expectedSV.getSite1EntrezGeneId()); - // site1HugoSymbol not tested - registerDifference(response, "site1EnsemblTranscriptId", actualSV.getSite1EnsemblTranscriptId(), expectedSV.getSite1EnsemblTranscriptId()); - registerDifference(response, "site1Chromosome", actualSV.getSite1Chromosome(), expectedSV.getSite1Chromosome()); - registerDifference(response, "site1Position", actualSV.getSite1Position(), expectedSV.getSite1Position()); - registerDifference(response, "site1Contig", actualSV.getSite1Contig(), expectedSV.getSite1Contig()); - registerDifference(response, "site1Region", actualSV.getSite1Region(), expectedSV.getSite1Region()); - registerDifference(response, "site1RegionNumber", actualSV.getSite1RegionNumber(), expectedSV.getSite1RegionNumber()); - registerDifference(response, "site1Description", actualSV.getSite1Description(), expectedSV.getSite1Description()); - registerDifference(response, "site2EntrezGeneId", actualSV.getSite2EntrezGeneId(), expectedSV.getSite2EntrezGeneId()); - // site2HugoSymbol not tested - registerDifference(response, "site2EnsemblTranscriptId", actualSV.getSite2EnsemblTranscriptId(), expectedSV.getSite2EnsemblTranscriptId()); - registerDifference(response, "site2Chromosome", actualSV.getSite2Chromosome(), expectedSV.getSite2Chromosome()); - registerDifference(response, "site2Position", actualSV.getSite2Position(), expectedSV.getSite2Position()); - registerDifference(response, "site2Contig", actualSV.getSite2Contig(), expectedSV.getSite2Contig()); - registerDifference(response, "site2Region", actualSV.getSite2Region(), expectedSV.getSite2Region()); - registerDifference(response, "site2RegionNumber", actualSV.getSite2RegionNumber(), expectedSV.getSite2RegionNumber()); - registerDifference(response, "site2Description", actualSV.getSite2Description(), expectedSV.getSite2Description()); - registerDifference(response, "site2EffectOnFrame", actualSV.getSite2EffectOnFrame(), expectedSV.getSite2EffectOnFrame()); - registerDifference(response, "ncbiBuild", actualSV.getNcbiBuild(), expectedSV.getNcbiBuild()); - registerDifference(response, "dnaSupport", actualSV.getDnaSupport(), expectedSV.getDnaSupport()); - registerDifference(response, "rnaSupport", actualSV.getRnaSupport(), expectedSV.getRnaSupport()); - registerDifference(response, "normalReadCount", actualSV.getNormalReadCount(), expectedSV.getNormalReadCount()); - registerDifference(response, "tumorReadCount", actualSV.getTumorReadCount(), expectedSV.getTumorReadCount()); - registerDifference(response, "normalVariantCount", actualSV.getNormalVariantCount(), expectedSV.getNormalVariantCount()); - registerDifference(response, "tumorVariantCount", actualSV.getTumorVariantCount(), expectedSV.getTumorVariantCount()); - registerDifference(response, "normalPairedEndReadCount", actualSV.getNormalPairedEndReadCount(), expectedSV.getNormalPairedEndReadCount()); - registerDifference(response, "tumorPairedEndReadCount", actualSV.getTumorPairedEndReadCount(), expectedSV.getTumorPairedEndReadCount()); - registerDifference(response, "normalSplitReadCount", actualSV.getNormalSplitReadCount(), expectedSV.getNormalSplitReadCount()); - registerDifference(response, "tumorSplitReadCount", actualSV.getTumorSplitReadCount(), expectedSV.getTumorSplitReadCount()); - registerDifference(response, "annotation", actualSV.getAnnotation(), expectedSV.getAnnotation()); - registerDifference(response, "breakpointType", actualSV.getBreakpointType(), expectedSV.getBreakpointType()); - registerDifference(response, "connectionType", actualSV.getConnectionType(), expectedSV.getConnectionType()); - registerDifference(response, "eventInfo", actualSV.getEventInfo(), expectedSV.getEventInfo()); - registerDifference(response, "variantClass", actualSV.getVariantClass(), expectedSV.getVariantClass()); - registerDifference(response, "length", actualSV.getLength(), expectedSV.getLength()); - registerDifference(response, "comments", actualSV.getComments(), expectedSV.getComments()); - registerDifference(response, "svStatus", actualSV.getSvStatus(), expectedSV.getSvStatus()); - registerDifference(response, "driverFilter", actualSV.getDriverFilter(), expectedSV.getDriverFilter()); - registerDifference(response, "driverFilterAnn", actualSV.getDriverFilterAnn(), expectedSV.getDriverFilterAnn()); - registerDifference(response, "driverTiersFilter", actualSV.getDriverTiersFilter(), expectedSV.getDriverTiersFilter()); - registerDifference(response, "driverTiersFilterAnn", actualSV.getDriverTiersFilterAnn(), expectedSV.getDriverTiersFilterAnn()); - return response.toString(); - } - - @Test - public void testImportStructuralVariantFile() throws Exception { - String[] sampleIds = {"TCGA-A1-A0SD-01", "TCGA-A1-A0SB-01"}; - String studyStableId = "study_tcga_pub"; - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyStableId); - int studyId = study.getInternalId(); - String testSampleStableId = "TCGA-A1-A0SB-01"; - int testSampleId = -1; - // we need the internal sample id - for (String sampleId : sampleIds) { - String patientId = sampleId.substring(0, 12); - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, patientId); - Integer patientIdInt = patient.getInternalId(); - Sample sample = DaoSample.getSampleByPatientAndSampleId(patientIdInt, sampleId); - Integer sampleIdInt = sample.getInternalId(); - if (testSampleStableId.equals(sample.getStableId())) { - testSampleId = sampleIdInt.intValue(); - } - } - - assertNotEquals(-1, testSampleId); - - String[] args = { - "--data","src/test/resources/data_structural_variants.txt", - "--meta","src/test/resources/meta_structural_variants.txt" , - "--noprogress", - "--loadMode", "bulkLoad" - }; - - try { - ImportProfileData runner = new ImportProfileData(args); - runner.run(); - } catch (Throwable e) { - //useful info for when this fails: - ConsoleUtil.showMessages(); - throw e; - } - - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_sv"); - assertNotNull(geneticProfile); - - int countStructuralVariantsInProfile = 0; - boolean foundTestSample = false; - - List structuralVariants = DaoStructuralVariant.getAllStructuralVariants(); - for (StructuralVariant structuralVariant : structuralVariants) { - if (geneticProfile.getGeneticProfileId() == structuralVariant.getGeneticProfileId()) { - countStructuralVariantsInProfile += 1; - if (testSampleId == structuralVariant.getSampleIdInternal()) { - foundTestSample = true; - assertEquals("", differenceReport(structuralVariant, constructExpectedStructuralVariant1())); - } - } - } - assertEquals(5, countStructuralVariantsInProfile); - assertEquals(true, foundTestSample); - } - - @Test - public void testImportCNAFile() throws Exception { - //genes in this test: - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - daoGene.addGene(new CanonicalGene(999999672, "TESTBRCA1")); - daoGene.addGene(new CanonicalGene(999999675, "TESTBRCA2")); - MySQLbulkLoader.flushAll(); - String[] args = { - "--data","src/test/resources/data_CNA_sample.txt", - "--meta","src/test/resources/meta_CNA.txt" , - "--noprogress", - "--loadMode", "bulkLoad" - }; - String[] sampleIds = {"TCGA-02-0001-01","TCGA-02-0003-01","TCGA-02-0004-01","TCGA-02-0006-01"}; - //This test is to check if the ImportProfileData class indeed adds the study stable Id in front of the - //dataset study id (e.g. studyStableId + "_breast_mutations"): - String studyStableId = "study_tcga_pub"; - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId(studyStableId); - studyId = study.getInternalId(); - //will be needed when relational constraints are active: - for (String sampleId : sampleIds) { - // fetch patient from db or add new one if does not exist - Patient p = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, sampleId); - Integer pId = (p == null) ? DaoPatient.addPatient(new Patient(study, sampleId)) : p.getInternalId(); - DaoSample.addSample(new Sample(sampleId, pId, study.getTypeOfCancerId())); - } - - try { - ImportProfileData runner = new ImportProfileData(args); - runner.run(); - } catch (Throwable e) { - //useful info for when this fails: - ConsoleUtil.showMessages(); - throw e; - } - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId(studyStableId + "_cna").getGeneticProfileId(); - List sampleInternalIds = new ArrayList(); - DaoSample.reCache(); - for (String sample : sampleIds) { - sampleInternalIds.add(DaoSample.getSampleByCancerStudyAndSampleId(studyId, sample).getInternalId()); - } - Collection cnaLevels = Arrays.asList((short)-2, (short)2); - List cnaEvents = DaoCnaEvent.getCnaEvents(sampleInternalIds, null, geneticProfileId, cnaLevels); - assertEquals(2, cnaEvents.size()); - //validate specific records. Data looks like: - //999999672 TESTBRCA1 -2 0 1 0 - //999999675 TESTBRCA2 0 2 0 -1 - //Check if the first two samples are loaded correctly: - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-02-0001-01").getInternalId(); - sampleInternalIds = Arrays.asList((int)sampleId); - CnaEvent cnaEvent = DaoCnaEvent.getCnaEvents(sampleInternalIds, null, geneticProfileId, cnaLevels).get(0); - assertEquals(-2, cnaEvent.getAlteration().getCode()); - assertEquals("TESTBRCA1", cnaEvent.getGeneSymbol()); - assertEquals("Putative_Passenger", cnaEvent.getDriverFilter()); - assertEquals("Test passenger", cnaEvent.getDriverFilterAnnotation()); - assertEquals("Class 2", cnaEvent.getDriverTiersFilter()); - assertEquals("Class 2 annotation", cnaEvent.getDriverTiersFilterAnnotation()); - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-02-0003-01").getInternalId(); - sampleInternalIds = Arrays.asList((int)sampleId); - cnaEvent = DaoCnaEvent.getCnaEvents(sampleInternalIds, null, geneticProfileId, cnaLevels).get(0); - assertEquals(2, cnaEvent.getAlteration().getCode()); - assertEquals("TESTBRCA2", cnaEvent.getGeneSymbol()); - assertEquals("Putative_Driver", cnaEvent.getDriverFilter()); - assertEquals("Test driver", cnaEvent.getDriverFilterAnnotation()); - assertEquals("Class 1", cnaEvent.getDriverTiersFilter()); - assertEquals("Class 1 annotation", cnaEvent.getDriverTiersFilterAnnotation()); - } - - private void validateMutationAminoAcid (int geneticProfileId, Integer sampleId, long entrezGeneId, String expectedAminoAcidChange) throws DaoException { - ArrayList mutationList = DaoMutation.getMutations(geneticProfileId, sampleId, entrezGeneId); - assertEquals(1, mutationList.size()); - assertEquals(expectedAminoAcidChange, mutationList.get(0).getProteinChange()); - } - - private static void loadGenes() throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - // genes for "data_mutations_extended.txt" - daoGene.addGene(new CanonicalGene(114548L, "NLRP3")); - daoGene.addGene(new CanonicalGene(3339L, "HSPG2")); - daoGene.addGene(new CanonicalGene(282770L, "OR10AG1")); - daoGene.addGene(new CanonicalGene(51806L, "CALML5")); - daoGene.addGene(new CanonicalGene(343035L, "RD3")); - daoGene.addGene(new CanonicalGene(80114L, "BICC1")); - daoGene.addGene(new CanonicalGene(219736L, "STOX1")); - daoGene.addGene(new CanonicalGene(6609L, "SMPD1")); - daoGene.addGene(new CanonicalGene(51259L, "TMEM216")); - daoGene.addGene(new CanonicalGene(89L, "ACTN3")); - daoGene.addGene(new CanonicalGene(64581L, "CLEC7A")); - daoGene.addGene(new CanonicalGene(50839L, "TAS2R10")); - daoGene.addGene(new CanonicalGene(54407L, "SLC38A2")); - daoGene.addGene(new CanonicalGene(6667L, "SP1")); - daoGene.addGene(new CanonicalGene(2842L, "GPR19")); - // additional genes for "data_mutations_oncotated.txt" - daoGene.addGene(new CanonicalGene(55138L, "FAM90A1")); - daoGene.addGene(new CanonicalGene(10628L, "TXNIP")); - daoGene.addGene(new CanonicalGene(80343, "SEL1L2")); - daoGene.addGene(new CanonicalGene(29102L, "DROSHA")); - daoGene.addGene(new CanonicalGene(7204L, "TRIO")); - daoGene.addGene(new CanonicalGene(57111L, "RAB25")); - daoGene.addGene(new CanonicalGene(773L, "CACNA1A")); - daoGene.addGene(new CanonicalGene(100132025L, "LOC100132025")); - daoGene.addGene(new CanonicalGene(1769L, "DNAH8")); - daoGene.addGene(new CanonicalGene(343171L, "OR2W3")); - daoGene.addGene(new CanonicalGene(2901L, "GRIK5")); - daoGene.addGene(new CanonicalGene(10568L, "SLC34A2")); - daoGene.addGene(new CanonicalGene(140738L, "TMEM37")); - daoGene.addGene(new CanonicalGene(94025L, "MUC16")); - daoGene.addGene(new CanonicalGene(1915L, "EEF1A1")); - daoGene.addGene(new CanonicalGene(65083L, "NOL6")); - daoGene.addGene(new CanonicalGene(7094L, "TLN1")); - daoGene.addGene(new CanonicalGene(51196L, "PLCE1")); - daoGene.addGene(new CanonicalGene(1952L, "CELSR2")); - daoGene.addGene(new CanonicalGene(2322L, "FLT3")); - daoGene.addGene(new CanonicalGene(867L, "CBL")); - MySQLbulkLoader.flushAll(); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportReferenceGenome.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportReferenceGenome.java deleted file mode 100644 index 8a4c5d3d1b1..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportReferenceGenome.java +++ /dev/null @@ -1,40 +0,0 @@ -package org.mskcc.cbio.portal.scripts; - -import org.junit.Test; -import org.junit.runner.RunWith; - -import static org.junit.Assert.assertEquals; - -import java.io.File; - -import org.mskcc.cbio.portal.dao.DaoReferenceGenome; -import org.mskcc.cbio.portal.model.ReferenceGenome; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * JUnit tests for ImportGeneData class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportReferenceGenome { - - @Test - /* - * Checks that ImportGeneData works by calculating the length from three genes - * in genes_test.txt. The file genes_test.txt contains real data. - */ - public void testImportReferenceGenome() throws Exception { - ProgressMonitor.setConsoleMode(false); - File file = new File("src/test/resources/reference_genomes.txt"); - ImportReferenceGenome.importData(file); - ReferenceGenome genome = DaoReferenceGenome.getReferenceGenomeByInternalId(1); - assertEquals("GRCh37", genome.getBuildName()); - assertEquals(1, DaoReferenceGenome.getReferenceGenomeIdByName("GRCh37")); - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportStructuralVariantData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportStructuralVariantData.java deleted file mode 100644 index d5df518788c..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportStructuralVariantData.java +++ /dev/null @@ -1,191 +0,0 @@ -/* - * Copyright (c) 2018 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -/* - * @author Sander Tan -*/ - -package org.mskcc.cbio.portal.scripts; - -import junitparams.JUnitParamsRunner; -import junitparams.Parameters; -import org.apache.commons.lang.StringEscapeUtils; -import org.codehaus.jackson.map.ObjectMapper; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Rule; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.junit4.rules.SpringClassRule; -import org.springframework.test.context.junit4.rules.SpringMethodRule; -import org.springframework.transaction.annotation.Transactional; - -import static com.google.common.collect.Sets.newHashSet; -import static org.junit.Assert.*; -import java.io.*; -import java.util.*; - -/** - * Test class to test functionality of ImportStructralVariantData -*/ -@RunWith(JUnitParamsRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportStructuralVariantData{ - int studyId; - int geneticProfileId; - Set noNamespaces = null; - - // Needed to run with JUnitParamsRunner. - // See: https://github.com/Pragmatists/junitparams-spring-integration-example#alternative-way-to-start-spring-context - @ClassRule - public static final SpringClassRule SPRING_CLASS_RULE = new SpringClassRule(); - @Rule - public final SpringMethodRule springMethodRule = new SpringMethodRule(); - - @Before - public void setUp() throws DaoException { - studyId = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub").getInternalId(); - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_structural_variants").getGeneticProfileId(); - } - - @Test - public void testImportStructuralVariantData() throws DaoException, IOException { - ProgressMonitor.setConsoleMode(false); - - // Load test structural variants - File file = new File("src/test/resources/data_structural_variants.txt"); - ImportStructuralVariantData importer = new ImportStructuralVariantData(file, geneticProfileId, null, noNamespaces); - importer.importData(); - MySQLbulkLoader.flushAll(); - - List structuralVariants = DaoStructuralVariant.getAllStructuralVariants(); - assertEquals("KIAA1549-BRAF.K16B10.COSF509_2", structuralVariants.get(0).getSite2Description()); - assertEquals("ENST00000318522", structuralVariants.get(1).getSite1EnsemblTranscriptId()); - assertEquals(5, structuralVariants.size()); - assertEquals(0L, (long) structuralVariants.get(2).getSite1EntrezGeneId()); // null in db - assertEquals(673L, (long) structuralVariants.get(2).getSite2EntrezGeneId()); - assertEquals(0L, (long) structuralVariants.get(3).getSite2EntrezGeneId()); // null in db - assertEquals(673L, (long) structuralVariants.get(3).getSite1EntrezGeneId()); - assertEquals(0L, (long) structuralVariants.get(4).getSite2EntrezGeneId()); // null in db - assertEquals(207, (long) structuralVariants.get(4).getSite1EntrezGeneId()); // 110384692 in file, 207 in DB by hugo - } - - private Object[] namespaceJsonParams() { - return new Object[] { - // Has namespaces: - new Object[] { - "EML4-ALK.E13A20.AB462411_2", - "{\"StructVarNamespace2\":{\"foo\":\"bar\"},\"StructVarNamespace\":{\"column1\":\"value1a\",\"column2\":\"value2a\"}}" - }, - // Does not have namespaces: - new Object[] { - "KIAA1549-BRAF.K16B10.COSF509_2", - "{\"StructVarNamespace2\":{\"foo\":null},\"StructVarNamespace\":{\"column1\":null,\"column2\":null}}" - } - }; - } - - @Test - @Parameters(method = "namespaceJsonParams") - public void testImportStructuralVariantDataImportsCustomNamespacesFromTwoSamples( - String site2description, - String expectedNamespaceJson - ) throws DaoException, IOException { - ProgressMonitor.setConsoleMode(false); - - // Load test structural variants - File file = new File("src/test/resources/data_structural_variants.txt"); - Set namespacesToImport = newHashSet("StructVarNamespace", "StructVarNamespace2"); - ImportStructuralVariantData importer = new ImportStructuralVariantData(file, geneticProfileId, null, namespacesToImport); - importer.importData(); - MySQLbulkLoader.flushAll(); - - List all = DaoStructuralVariant - .getAllStructuralVariants(); - - // Namespace values present: - String annotationJson = all - .stream().filter(sv -> site2description.equals(sv.getSite2Description())) - .findFirst().get() - .getAnnotationJson(); - ObjectMapper mapper = new ObjectMapper(); - assertEquals( - mapper.readTree(expectedNamespaceJson), - mapper.readTree(annotationJson) - ); - } - - @Test - public void testImportStructuralVariantDataIgnoresUnspecifiedNamespaces() throws DaoException, IOException { - ProgressMonitor.setConsoleMode(false); - - // Load test structural variants - File file = new File("src/test/resources/data_structural_variants_with_unspecified_namespace.txt"); - Set namespacesToImport = newHashSet("StructVarNamespace", "StructVarNamespace2"); - ImportStructuralVariantData importer = new ImportStructuralVariantData(file, geneticProfileId, null, namespacesToImport); - importer.importData(); - MySQLbulkLoader.flushAll(); - - List all = DaoStructuralVariant - .getAllStructuralVariants(); - - // FaultyStructVarNamespace.shouldNotBeImported is ignored: - String annotationJson = all - .stream().filter(sv -> "EML4-ALK.E13A20.AB462411_2".equals(sv.getSite2Description())) - .findFirst().get() - .getAnnotationJson(); - String expectedAnnotationJson = "{\"StructVarNamespace2\":{\"foo\":\"bar\"},\"StructVarNamespace\":{\"column1\":\"value1a\",\"column2\":\"value2a\"}}"; - assertEquals(expectedAnnotationJson, annotationJson); - } - - @Test - public void testImportStructuralVariantDataWithNoNamespaceData() throws DaoException, IOException { - ProgressMonitor.setConsoleMode(false); - - // Load test structural variants - File file = new File("src/test/resources/data_structural_variants_with_no_namespace_data.txt"); - Set namespacesToImport = newHashSet("StructVarNamespace", "StructVarNamespace2"); - ImportStructuralVariantData importer = new ImportStructuralVariantData(file, geneticProfileId, null, namespacesToImport); - importer.importData(); - MySQLbulkLoader.flushAll(); - - List all = DaoStructuralVariant - .getAllStructuralVariants(); - - // result should be null: - String annotationJson = all - .stream().filter(sv -> "EML4-ALK.E13A20.AB462411_2".equals(sv.getSite2Description())) - .findFirst().get() - .getAnnotationJson(); - String expectedAnnotationJson = null; - assertEquals(expectedAnnotationJson, annotationJson); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportTabDelimData.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportTabDelimData.java deleted file mode 100644 index 4c9f9f8ced8..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestImportTabDelimData.java +++ /dev/null @@ -1,510 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import java.io.BufferedReader; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.File; -import java.io.FileNotFoundException; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Set; - -/** - * JUnit tests for ImportTabDelimData class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportTabDelimData { - - private final Set NON_CASE_ID_COLS = new HashSet<>(Arrays.asList( - "Gene Symbol", - "Hugo_Symbol", - "Entrez_Gene_Id", - "Locus ID", - "Cytoband", - "Composite.Element.Ref", - "geneset_id" - )); - - private int studyId; - private int geneticProfileId; - private int sample1; - private int sample2; - private int sample3; - private int sample4; - private int sample5; - private CancerStudy study; - - @Before - public void setUp() throws DaoException { - DaoCancerStudy.reCacheAll(); - DaoGeneOptimized.getInstance().reCache(); - ProgressMonitor.resetWarnings(); - - study = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - studyId =study.getInternalId(); - - GeneticProfile newGeneticProfile = new GeneticProfile(); - newGeneticProfile.setCancerStudyId(studyId); - newGeneticProfile.setGeneticAlterationType(GeneticAlterationType.COPY_NUMBER_ALTERATION); - newGeneticProfile.setStableId("study_tcga_pub_test"); - newGeneticProfile.setProfileName("Barry CNA Results"); - newGeneticProfile.setDatatype("test"); - DaoGeneticProfile.addGeneticProfile(newGeneticProfile); - - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_test").getGeneticProfileId(); - - sample1 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SB-01").getInternalId(); - sample2 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SD-01").getInternalId(); - sample3 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SE-01").getInternalId(); - sample4 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SF-01").getInternalId(); - sample5 = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "TCGA-A1-A0SG-01").getInternalId(); - } - - /** - * Test importing of cna_test.txt file. - * @throws Exception All Errors. - */ - @Test - public void testImportCnaDataBulkLoadOff() throws Exception { - - MySQLbulkLoader.bulkLoadOff(); - runImportCnaData(); - } - - /** - * Test importing of cna_test.txt file. - * @throws Exception All Errors. - */ - @Test - public void testImportCnaDataBulkLoadOn() throws Exception { - MySQLbulkLoader.bulkLoadOn(); - runImportCnaData(); - } - - private void runImportCnaData() throws DaoException, IOException{ - - DaoGeneticAlteration dao = DaoGeneticAlteration.getInstance(); - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - // the largest current true Entrez gene ID counts 8 digits - daoGene.addGene(new CanonicalGene(999999207, "TESTAKT1")); - daoGene.addGene(new CanonicalGene(999999208, "TESTAKT2")); - daoGene.addGene(new CanonicalGene(999910000, "TESTAKT3")); - daoGene.addGene(new CanonicalGene(999999369, "TESTARAF")); - daoGene.addGene(new CanonicalGene(999999472, "TESTATM")); - daoGene.addGene(new CanonicalGene(999999673, "TESTBRAF")); - daoGene.addGene(new CanonicalGene(999999672, "TESTBRCA1")); - daoGene.addGene(new CanonicalGene(999999675, "TESTBRCA2")); - - ProgressMonitor.setConsoleMode(false); - // TBD: change this to use getResourceAsStream() - File file = new File("src/test/resources/cna_test.txt"); - ImportTabDelimData parser = new ImportTabDelimData(file, "Barry", geneticProfileId, null, DaoGeneticAlteration.getInstance()); - int numLines = FileUtil.getNumLines(file); - parser.importData(numLines); - - String value = dao.getGeneticAlteration(geneticProfileId, sample1, 999999207); - assertEquals ("0", value); - value = dao.getGeneticAlteration(geneticProfileId, sample4, 999999207); - assertEquals ("-1", value); - value = dao.getGeneticAlteration(geneticProfileId, sample2, 999999207); - assertEquals ("0", value); - value = dao.getGeneticAlteration(geneticProfileId, sample2, 999910000); - assertEquals ("2", value); - value = dao.getGeneticAlteration(geneticProfileId, sample3, 999910000); - assertEquals ("2", value); - - int cnaStatus = Integer.parseInt(dao.getGeneticAlteration(geneticProfileId, sample3, 999910000)); - assertEquals(CopyNumberStatus.COPY_NUMBER_AMPLIFICATION, cnaStatus); - cnaStatus = Integer.parseInt(dao.getGeneticAlteration(geneticProfileId, sample2, 999910000)); - assertEquals(CopyNumberStatus.COPY_NUMBER_AMPLIFICATION, cnaStatus); - cnaStatus = Integer.parseInt(dao.getGeneticAlteration(geneticProfileId, sample4, 999999207)); - assertEquals(CopyNumberStatus.HEMIZYGOUS_DELETION, cnaStatus); - - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "TCGA-A1-A0SB"); - Sample sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-A1-A0SB-01"); - assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)); - - patient = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "TCGA-A1-A0SJ"); - sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-A1-A0SJ-01"); - assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)); - - ArrayList caseIds = DaoSampleProfile.getAllSampleIdsInProfile(geneticProfileId); - assertEquals(14, caseIds.size()); - } - - /** - * Test importing of cna_test2.txt file. - * This is identical to cna_test.txt, except there is no target line. - * @throws Exception All Errors. - */ - @Test - public void testImportCnaData2BulkLoadOff() throws Exception { - // test with both values of MySQLbulkLoader.isBulkLoad() - MySQLbulkLoader.bulkLoadOff(); - runImportCnaData2(); - } - - /** - * Test importing of cna_test2.txt file. - * This is identical to cna_test.txt, except there is no target line. - * @throws Exception All Errors. - */ - @Test - public void testImportCnaData2BulkLoadOn() throws Exception { - // test with both values of MySQLbulkLoader.isBulkLoad() - MySQLbulkLoader.bulkLoadOn(); - runImportCnaData2(); - } - - private void runImportCnaData2() throws DaoException, IOException{ - - DaoGeneticAlteration dao = DaoGeneticAlteration.getInstance(); - - ProgressMonitor.setConsoleMode(false); - // TBD: change this to use getResourceAsStream() - File file = new File("src/test/resources/cna_test2.txt"); - ImportTabDelimData parser = new ImportTabDelimData(file, geneticProfileId, null, DaoGeneticAlteration.getInstance()); - int numLines = FileUtil.getNumLines(file); - parser.importData(numLines); - - String value = dao.getGeneticAlteration(geneticProfileId, sample1, 207); - assertEquals (value, "0"); - value = dao.getGeneticAlteration(geneticProfileId, sample4, 207); - assertEquals (value, "-1"); - value = dao.getGeneticAlteration(geneticProfileId, sample2, 207); - assertEquals (value, "0"); - value = dao.getGeneticAlteration(geneticProfileId, sample2, 10000); - assertEquals (value, "2"); - value = dao.getGeneticAlteration(geneticProfileId, sample3, 10000); - assertEquals (value, "2"); - - int cnaStatus = Integer.parseInt(dao.getGeneticAlteration(geneticProfileId, sample3, 10000)); - assertEquals(CopyNumberStatus.COPY_NUMBER_AMPLIFICATION, cnaStatus); - cnaStatus = Integer.parseInt(dao.getGeneticAlteration(geneticProfileId, sample2, 10000)); - assertEquals(CopyNumberStatus.COPY_NUMBER_AMPLIFICATION, cnaStatus); - cnaStatus = Integer.parseInt(dao.getGeneticAlteration(geneticProfileId, sample4, 207)); - assertEquals(CopyNumberStatus.HEMIZYGOUS_DELETION, cnaStatus); - - Patient patient = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "TCGA-A1-A0SB"); - Sample sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-A1-A0SB-01"); - assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)); - - patient = DaoPatient.getPatientByCancerStudyAndPatientId(studyId, "TCGA-A1-A0SJ"); - sample = DaoSample.getSampleByPatientAndSampleId(patient.getInternalId(), "TCGA-A1-A0SJ-01"); - assertTrue(DaoSampleProfile.sampleExistsInGeneticProfile(sample.getInternalId(), geneticProfileId)); - ArrayList sampleIds = DaoSampleProfile.getAllSampleIdsInProfile(geneticProfileId); - assertEquals(14, sampleIds.size()); - } - - /** - * Test importing of mrna_test file. - * @throws Exception All Errors. - */ - @Test - public void testImportmRnaData1BulkLoadOff() throws Exception { - // test with both values of MySQLbulkLoader.isBulkLoad() - MySQLbulkLoader.bulkLoadOff(); - runImportRnaData1(); - } - - /** - * Test importing of mrna_test file. - * @throws Exception All Errors. - */ - @Test - public void testImportmRnaData1BulkLoadOn() throws Exception { - // test with both values of MySQLbulkLoader.isBulkLoad() - MySQLbulkLoader.bulkLoadOn(); - runImportRnaData1(); - } - - private void runImportRnaData1() throws DaoException, IOException{ - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - DaoGeneticAlteration dao = DaoGeneticAlteration.getInstance(); - - daoGene.addGene(new CanonicalGene(999999780, "A")); - daoGene.addGene(new CanonicalGene(999995982, "B")); - daoGene.addGene(new CanonicalGene(999993310, "C")); - daoGene.addGene(new CanonicalGene(999997849, "D")); - daoGene.addGene(new CanonicalGene(999992978, "E")); - daoGene.addGene(new CanonicalGene(999997067, "F")); - daoGene.addGene(new CanonicalGene(999911099, "G")); - daoGene.addGene(new CanonicalGene(999999675, "6352")); - - GeneticProfile geneticProfile = new GeneticProfile(); - - geneticProfile.setCancerStudyId(studyId); - geneticProfile.setStableId("gbm_mrna"); - geneticProfile.setGeneticAlterationType(GeneticAlterationType.MRNA_EXPRESSION); - geneticProfile.setDatatype("CONTINUOUS"); - geneticProfile.setProfileName("MRNA Data"); - geneticProfile.setProfileDescription("mRNA Data"); - DaoGeneticProfile.addGeneticProfile(geneticProfile); - - int newGeneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("gbm_mrna").getGeneticProfileId(); - - ProgressMonitor.setConsoleMode(true); - // TBD: change this to use getResourceAsStream() - File file = new File("src/test/resources/mrna_test.txt"); - addTestPatientAndSampleRecords(file); - ImportTabDelimData parser = new ImportTabDelimData(file, newGeneticProfileId, null, DaoGeneticAlteration.getInstance()); - int numLines = FileUtil.getNumLines(file); - parser.importData(numLines); - ConsoleUtil.showMessages(); - - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "DD639").getInternalId(); - String value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999992978); - assertEquals ("2.01", value ); - - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "DD638").getInternalId(); - value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999997849); - assertEquals ("0.55", value ); - } - - - /** - * Test importing of data_expression file. - * @throws Exception All Errors. - */ - @Test - public void testImportmRnaData2() throws Exception { - MySQLbulkLoader.bulkLoadOn(); - - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - DaoGeneticAlteration dao = DaoGeneticAlteration.getInstance(); - - //Gene with alias: - daoGene.addGene(makeGeneWithAlias(999997504, "TESTXK", "NA")); - //Other genes: - daoGene.addGene(new CanonicalGene(999999999, "TESTNAT1")); - - daoGene.addGene(new CanonicalGene(999997124, "TESTTNF")); - daoGene.addGene(new CanonicalGene(999991111, "TESTCHEK1")); - daoGene.addGene(new CanonicalGene(999999919, "TESTABCA1")); - // will get generated negative id: - daoGene.addGene(new CanonicalGene(-1, "TESTphosphoprotein")); - - GeneticProfile geneticProfile = new GeneticProfile(); - - geneticProfile.setCancerStudyId(studyId); - geneticProfile.setStableId("gbm_mrna"); - geneticProfile.setGeneticAlterationType(GeneticAlterationType.MRNA_EXPRESSION); - geneticProfile.setDatatype("CONTINUOUS"); - geneticProfile.setProfileName("MRNA Data"); - geneticProfile.setProfileDescription("mRNA Data"); - DaoGeneticProfile.addGeneticProfile(geneticProfile); - - int newGeneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("gbm_mrna").getGeneticProfileId(); - - ProgressMonitor.setConsoleMode(true); - // TBD: change this to use getResourceAsStream() - File file = new File("src/test/resources/tabDelimitedData/data_expression2.txt"); - addTestPatientAndSampleRecords(file); - ImportTabDelimData parser = new ImportTabDelimData(file, newGeneticProfileId, null, DaoGeneticAlteration.getInstance()); - int numLines = FileUtil.getNumLines(file); - parser.importData(numLines); - - // check if expected warnings are given: - ArrayList warnings = ProgressMonitor.getWarnings(); - int countDuplicatedRowWarnings = 0; - int countInvalidEntrez = 0; - int countSkippedWarnings = 0; - for (String warning: warnings) { - if (warning.contains("Duplicated row")) { - countDuplicatedRowWarnings++; - } - if (warning.contains("invalid Entrez_Id")) { - //invalid Entrez - countInvalidEntrez++; - } - if (warning.contains("Record will be skipped")) { - //Entrez is a valid number, but not found - countSkippedWarnings++; - } - } - //check that we have 11 warning messages: - assertEquals(4, countDuplicatedRowWarnings); - assertEquals(3, countInvalidEntrez); - assertEquals(4, countSkippedWarnings); - - Set geneticEntityIds = DaoGeneticAlteration.getEntityIdsInProfile(newGeneticProfileId); - // data will be loaded for 5 of the genes - assertEquals(5, geneticEntityIds.size()); - HashMap> dataMap = dao.getGeneticAlterationMapForEntityIds(newGeneticProfileId, geneticEntityIds); - assertEquals(5, dataMap.entrySet().size()); - - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "SAMPLE1").getInternalId(); - String value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999997124); - assertEquals ("770", value ); - - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "SAMPLE3").getInternalId(); - value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999997124); - assertEquals ("220", value ); - - //gene should also be loaded via its alias "NA" as defined above: - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "SAMPLE3").getInternalId(); - value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999997504); - assertEquals ("9940", value ); - } - - - /** - * Test importing of data_rppa file. - * @throws Exception All Errors. - */ - @Test - public void testImportRppaData() throws Exception { - MySQLbulkLoader.bulkLoadOn(); - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - DaoGeneticAlteration dao = DaoGeneticAlteration.getInstance(); - - //Genes with alias: - daoGene.addGene(makeGeneWithAlias(999999931,"TESTACACA", "TESTACC1")); - daoGene.addGene(makeGeneWithAlias(999999207,"TESTAKT1", "TESTAKT")); - daoGene.addGene(makeGeneWithAlias(999999597,"TESTSANDER", "TESTACC1")); - daoGene.addGene(makeGeneWithAlias(999997158,"TESTTP53BP1", "TEST53BP1")); - // test for NA being a special case in RPPA, and not the usual alias - daoGene.addGene(makeGeneWithAlias(999997504, "XK", "NA")); - //Other genes: - daoGene.addGene(new CanonicalGene(999999932,"TESTACACB")); - daoGene.addGene(new CanonicalGene(999999208,"TESTAKT2")); - daoGene.addGene(new CanonicalGene(999999369,"TESTARAF")); - daoGene.addGene(new CanonicalGene(999991978, "TESTEIF4EBP1")); - daoGene.addGene(new CanonicalGene(999995562,"TESTPRKAA1")); - daoGene.addGene(new CanonicalGene(999997531,"TESTYWHAE")); - daoGene.addGene(new CanonicalGene(999910000,"TESTAKT3")); - daoGene.addGene(new CanonicalGene(999995578,"TESTPRKCA")); - - - GeneticProfile geneticProfile = new GeneticProfile(); - - geneticProfile.setCancerStudyId(studyId); - geneticProfile.setStableId("gbm_rppa"); - geneticProfile.setGeneticAlterationType(GeneticAlterationType.PROTEIN_LEVEL); - geneticProfile.setDatatype("LOG2-VALUE"); - geneticProfile.setProfileName("RPPA Data"); - geneticProfile.setProfileDescription("RPPA Data"); - DaoGeneticProfile.addGeneticProfile(geneticProfile); - - int newGeneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("gbm_rppa").getGeneticProfileId(); - - ProgressMonitor.setConsoleMode(true); - // TBD: change this to use getResourceAsStream() - File file = new File("src/test/resources/tabDelimitedData/data_rppa.txt"); - addTestPatientAndSampleRecords(file); - ImportTabDelimData parser = new ImportTabDelimData(file, newGeneticProfileId, null, DaoGeneticAlteration.getInstance()); - int numLines = FileUtil.getNumLines(file); - parser.importData(numLines); - ConsoleUtil.showMessages(); - - int sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "SAMPLE1").getInternalId(); - String value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999997531); - assertEquals ("1.5", value ); - - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "SAMPLE4").getInternalId(); - value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999997531); - assertEquals ("2", value ); - - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "SAMPLE4").getInternalId(); - value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999997504); - assertEquals ("NaN", value ); //"NA" is not expected to be stored because of workaround for bug in firehose. See also https://github.com/cBioPortal/cbioportal/issues/839#issuecomment-203523078 - - sampleId = DaoSample.getSampleByCancerStudyAndSampleId(studyId, "SAMPLE1").getInternalId(); - value = dao.getGeneticAlteration(newGeneticProfileId, sampleId, 999995578); - assertEquals ("1.5", value ); - } - - private CanonicalGene makeGeneWithAlias(int entrez, String symbol, String alias) { - CanonicalGene gene = new CanonicalGene(entrez, symbol); - Set aliases = new HashSet(); - aliases.add(alias); - gene.setAliases(aliases); - return gene; - } - - private void addTestPatientAndSampleRecords(File file) throws FileNotFoundException, IOException, DaoException { - // extract sample ids from header - FileReader reader = new FileReader(file); - BufferedReader buf = new BufferedReader(reader); - String headerLine = buf.readLine(); - String parts[] = headerLine.split("\t"); - List sampleIds = new ArrayList<>(); - for (int i=0; i. -*/ - -package org.mskcc.cbio.portal.scripts; - -// imports -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.User; -import org.mskcc.cbio.portal.dao.DaoUser; -import org.mskcc.cbio.portal.model.UserAuthorities; -import org.mskcc.cbio.portal.dao.DaoUserAuthorities; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -/** - * JUnit test for ImportUsers class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestImportUsers { - - @Test - public void testImportUsers() throws Exception{ - - // TBD: change this to use getResourceAsStream() - String args[] = {"src/test/resources/test-users.txt"}; - ImportUsers.main(args); - - User user = DaoUser.getUserByEmail("Dhorak@yahoo.com"); - assertTrue(user != null); - assertTrue(user.isEnabled()); - UserAuthorities authorities = DaoUserAuthorities.getUserAuthorities(user); - assertTrue(authorities.getAuthorities().contains("ROLE_MANAGER")); - - user = DaoUser.getUserByEmail("Lonnie@openid.org"); - assertTrue(user != null); - assertFalse(user.isEnabled()); - authorities = DaoUserAuthorities.getUserAuthorities(user); - assertEquals(authorities.getAuthorities().size(), 1); - DaoUserAuthorities.removeUserAuthorities(user); - assertEquals(DaoUserAuthorities.getUserAuthorities(user).getAuthorities().size(), 0); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestIntegrationTest.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestIntegrationTest.java deleted file mode 100644 index df70b972dd1..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestIntegrationTest.java +++ /dev/null @@ -1,482 +0,0 @@ -/* - * Copyright (c) 2016 - 2022 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertTrue; - -import java.io.File; -import java.io.FileInputStream; -import java.io.IOException; -import java.io.InputStream; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; - -import com.fasterxml.jackson.annotation.JsonIgnoreProperties; -import com.fasterxml.jackson.annotation.JsonProperty; -import com.fasterxml.jackson.core.JsonParseException; -import com.fasterxml.jackson.databind.JsonMappingException; -import com.fasterxml.jackson.databind.ObjectMapper; - -import org.cbioportal.model.GenericAssayData; -import org.cbioportal.model.GenesetMolecularData; -import org.cbioportal.model.StructuralVariant; -import org.cbioportal.model.StructuralVariantQuery; -import org.cbioportal.persistence.PersistenceConstants; -import org.cbioportal.service.GenericAssayService; -import org.cbioportal.service.GenesetDataService; -import org.cbioportal.service.StructuralVariantService; -import org.junit.Before; -import org.junit.Ignore; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.DaoGeneset; -import org.mskcc.cbio.portal.dao.DaoGeneticEntity; -import org.mskcc.cbio.portal.dao.DaoGistic; -import org.mskcc.cbio.portal.dao.DaoSampleList; -import org.mskcc.cbio.portal.dao.MySQLbulkLoader; -import org.mskcc.cbio.portal.dao.DaoMutation; -import org.mskcc.cbio.portal.dao.DaoTypeOfCancer; -import org.mskcc.cbio.portal.dao.DaoClinicalData; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.dao.DaoGeneticAlteration; -import org.mskcc.cbio.portal.dao.DaoClinicalAttributeMeta; -import org.mskcc.cbio.portal.model.ClinicalData; -import org.mskcc.cbio.portal.model.ClinicalAttribute; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.SampleList; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.TypeOfCancer; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ExtendedMutation; -import org.mskcc.cbio.portal.model.Gistic; -import org.mskcc.cbio.portal.util.ConsoleUtil; -import org.mskcc.cbio.portal.util.ProgressMonitor; -import org.mskcc.cbio.portal.util.SpringUtil; -import org.mskcc.cbio.portal.util.TransactionalScripts; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.ApplicationContext; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * Integration test using the same data that is used by validation system test - * "study_es_0". In the validation system test for "study_es_0" it is checked if - * the study can pass validation without any errors or warnings. Here we submit - * the same study to the data loading code and check that it also loads - * correctly and completely into the DB. - * - * @author Pieter Lukasse - */ - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/integrationTestScript.xml", "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestIntegrationTest { - - @Autowired - private ApplicationContext applicationContext; - - @Before - public void setUp() throws DaoException, JsonParseException, JsonMappingException, IOException, Exception { - SpringUtil.setApplicationContext(applicationContext); - ProgressMonitor.setConsoleMode(false); - ProgressMonitor.resetWarnings(); - DaoCancerStudy.reCacheAll(); - DaoGeneOptimized.getInstance().reCache(); - loadGenes(); - loadGenePanel(); - } - - /** - * Test to check if study_es_0 can be loaded correctly into DB. Should fail if - * any warning is given by loader classes or if expected data is not found in DB - * at the end of the test. - * - * @throws Throwable - */ - @Ignore("Skip TestIntegrationTest.testLoadStudyEs0 due to NullPointerException") - @Test - public void testLoadStudyEs0() throws Throwable { - try { - // === assumptions that we rely upon in the checks later on: ==== - // assumption 1: there are no clinical attributes at the start of the test: - assertEquals(0, DaoClinicalAttributeMeta.getAllMap().size()); - - // use this to get progress info/troubleshoot: - // ProgressMonitor.setConsoleMode(true); - - // ==== Load the data ==== - TransactionalScripts scripts = applicationContext.getBean(TransactionalScripts.class); - scripts.run(); - - // count warnings, but disregard warnings caused by - // gene_symbol_disambiguation.txt - ArrayList warnings = ProgressMonitor.getWarnings(); - int countWarnings = 0; - for (String warning : warnings) { - if (!warning.contains("resources/gene_symbol_disambiguation.txt")) { - countWarnings++; - } - } - // check that there are no warnings: - assertEquals(0, countWarnings); - - // check that ALL data really got into DB correctly. In the spirit of - // integration tests, - // we want to query via the same service layer as the one used by the web API - // here. - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId("study_es_0"); - assertEquals("Test study es_0", cancerStudy.getName()); - - // ===== Check MUTATION data ======== - List mutations = DaoMutation.getAllMutations(); - // check number of mutation records in the database - // 3 in seed_mini.sql + 33 study_es_0/data_mutations_extended.maf (2 silent ignored)) - // so we expect 34 records in DB: - assertEquals(34, mutations.size()); - - //===== Check STRUCTURAL VARIANT data ======== - // 45 structural variant events are imported, using 31 unique genes, using 39 samples - // Not all 31 genes have to be queried. BRAF is fused to many of the test genes. - List entrezGeneIds = new ArrayList(Arrays.asList(57670, 673, 8031, 5979, 27436, 238, 7113, 2078, 1956, 238, 5774, 2115, 7273)); - - // Add samples and molecular profile IDs - List sampleIds = new ArrayList(Arrays.asList("TCGA-A2-A04P-01", "TCGA-A1-A0SB-01", "TCGA-A1-A0SB-01", "TCGA-A2-A04P-01", "TCGA-A2-A04P-01", "TCGA-A1-A0SK-01", "TCGA-A2-A0CM-01", "TCGA-AR-A1AR-01", "TCGA-B6-A0WX-01", "TCGA-BH-A1F0-01", "TCGA-B6-A0I6-01", "TCGA-BH-A18V-01", "TCGA-BH-A18Q-01", "TCGA-BH-A18K-01", "TCGA-BH-A0HL-01", "TCGA-BH-A0E0-01", "TCGA-BH-A0RX-01", "TCGA-A7-A13D-01", "TCGA-BH-A0E6-01", "TCGA-AO-A0J4-01", "TCGA-A7-A0CE-01", "TCGA-A7-A13E-01", "TCGA-A7-A0DA-01", "TCGA-D8-A142-01", "TCGA-D8-A143-01", "TCGA-AQ-A04J-01", "TCGA-BH-A0HN-01", "TCGA-A2-A0T0-01", "TCGA-A2-A0YE-01", "TCGA-A2-A0YJ-01", "TCGA-A2-A0D0-01", "TCGA-A2-A04U-01", "TCGA-AO-A0J6-01", "TCGA-A2-A0YM-01", "TCGA-A2-A0D2-01", "TCGA-BH-A0B3-01", "TCGA-A2-A04Q-01", "TCGA-A2-A0SX-01", "TCGA-AO-A0JL-01")); - List geneticProfileStableIds = new ArrayList(); - geneticProfileStableIds = Collections.nCopies(sampleIds.size(), "study_es_0_structural_variants"); - - StructuralVariantService structuralVariantService = applicationContext.getBean(StructuralVariantService.class); - List noStructVars = Collections.emptyList(); - List structuralVariants = structuralVariantService.fetchStructuralVariants(geneticProfileStableIds, sampleIds, entrezGeneIds, noStructVars); - - // Check if all 45 structural variants are imported - assertEquals(45, structuralVariants.size()); - - //===== Check CNA data ======== - DaoGeneticAlteration daoGeneticAlteration = DaoGeneticAlteration.getInstance(); - ArrayList hugoGeneSymbols = new ArrayList(Arrays.asList("ACAP3","AGRN","ATAD3A","ATAD3B","ATAD3C","AURKAIP1","ERCC5")); - ArrayList entrezIds = new ArrayList(Arrays.asList(116983L, 375790L, 55210L, 83858L, 219293L, 54998L, 2073L)); - GeneticProfile geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_es_0_gistic"); - int countAMP_DEL = 0; - int profileDataSize = 0; - for (Long entrezId : entrezIds) { - HashMap cnaProfileData = daoGeneticAlteration.getGeneticAlterationMap(geneticProfile.getGeneticProfileId(), entrezId); - profileDataSize += cnaProfileData.size(); - for (String profileData : cnaProfileData.values()) { - if (profileData.equals("2") || profileData.equals("-2")) { - countAMP_DEL++; - } - } - } - //there is data for 7 genes x 788 samples: - assertEquals(7*788, profileDataSize); - //there are 63 CNA entries that have value == 2 or value == -2; - assertEquals(63, countAMP_DEL); - - // log2CNA - geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_es_0_log2CNA"); - int count0506 = 0; - profileDataSize = 0; - for (Long entrezId : entrezIds) { - HashMap cnaProfileData = daoGeneticAlteration.getGeneticAlterationMap(geneticProfile.getGeneticProfileId(), entrezId); - profileDataSize += cnaProfileData.size(); - for (String profileData : cnaProfileData.values()) { - double profileDataValue = Double.parseDouble(profileData); - if (profileDataValue > -0.6 && profileDataValue <= -0.5) { - count0506++; - } - } - } - //there is data for 7 genes x 778 samples: - assertEquals(7*778, profileDataSize); - // there are 273 CNA entries that have value between -0.6 and 0.5; - assertEquals(273, count0506); - - // ===== Check CLINICAL data ======== - // in total 7 clinical attributes should be added (5 "patient type" including sample count - // and 3 "sample type" attributes including MUTATION_COUNT and FRACTION_GENOME_ALTERED) - // see also "assumptions" section at start of this test case - int patientAttrCount = 0; - int sampleAttrCount = 0; - for (ClinicalAttribute ca : DaoClinicalAttributeMeta.getDataByStudy(cancerStudy.getInternalId())) { - if (ca.isPatientAttribute()) { - patientAttrCount++; - } - else { - sampleAttrCount++; - } - } - assertEquals(3, sampleAttrCount); - assertEquals(5, patientAttrCount); - - Boolean mutationCountExists = false; - Boolean fractionGenomeAlteredExists = false; - for (ClinicalData cd : DaoClinicalData.getSampleData(cancerStudy.getInternalId(), Arrays.asList("TCGA-A2-A04P-01"))) { - if (cd.getAttrId().equals("MUTATION_COUNT")) { - mutationCountExists = true; - assertEquals("TCGA-A2-A04P-01 should have one mutation in MUTATION_COUNT", "1", cd.getAttrVal()); - } else if (cd.getAttrId().equals("FRACTION_GENOME_ALTERED")) { - fractionGenomeAlteredExists = true; - assertEquals("TCGA-A2-A04P-01 should have 0.0 FRACTION_GENOME_ALTERED (the imported segment file spans a very small part of the genome)", - 0.0, Float.parseFloat(cd.getAttrVal()), 0.01); - } - } - assertTrue("MUTATION_COUNT sample clinical attribute should have been added for TCGA-A2-A04P-01", mutationCountExists); - assertTrue("FRACTION_GENOME_ALTERED sample clinical attribute should have been added for TCGA-A2-A04P-01", fractionGenomeAlteredExists); - - // ===== Check EXPRESSION data ======== - geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_es_0_mrna"); - entrezIds = new ArrayList(Arrays.asList(90993L, 6205L, 9240L, 4313L, 23051L, 2073L)); - profileDataSize = 0; - int countGte2Lt3 = 0; - for (Long entrezId : entrezIds) { - HashMap cnaProfileData = daoGeneticAlteration.getGeneticAlterationMap(geneticProfile.getGeneticProfileId(), entrezId); - profileDataSize += cnaProfileData.size(); - for (String profileData : cnaProfileData.values()) { - double profileDataValue = Double.parseDouble(profileData); - if (profileDataValue >= 2.0 && profileDataValue < 3.0) { - countGte2Lt3++; - } - } - } - // there is data for 6 genes x 526 samples: - assertEquals(6 * 526, profileDataSize); - // there are 50 entries with value between 2.0 and 3.0 - assertEquals(50, countGte2Lt3); - - // ===== check cancer_type - TypeOfCancer cancerType = DaoTypeOfCancer.getTypeOfCancerById("brca-es0"); - assertEquals("Breast Invasive Carcinoma", cancerType.getName()); - - // ===== check gistic data - // servlet uses this query: - ArrayList gistics = DaoGistic.getAllGisticByCancerStudyId(cancerStudy.getInternalId()); - assertEquals(12, gistics.size()); - Gistic gisticChr10 = null, gisticChr20 = null; - for (Gistic gistic : gistics) { - if (gistic.getChromosome() == 20) { - // assert not yet set: - assertEquals(null, gisticChr20); - gisticChr20 = gistic; - } else if (gistic.getChromosome() == 10) { - // assert not yet set: - assertEquals(null, gisticChr10); - gisticChr10 = gistic; - } - } - assertEquals(8, gisticChr10.getGenes_in_ROI().size()); - assertEquals(1, gisticChr20.getGenes_in_ROI().size()); - assertEquals("ZNF217", gisticChr20.getGenes_in_ROI().get(0).getHugoGeneSymbolAllCaps()); - - // ===== check methylation - geneticProfile = DaoGeneticProfile.getGeneticProfileByStableId("study_es_0_methylation_hm27"); - entrezIds = new ArrayList(Arrays.asList(487L, 7871L, 3232L, 24145L, 3613L, 389L, 8148L, 283234L)); - profileDataSize = 0; - int count0506Pos = 0; - for (Long entrezId : entrezIds) { - HashMap cnaProfileData = daoGeneticAlteration.getGeneticAlterationMap(geneticProfile.getGeneticProfileId(), entrezId); - profileDataSize += cnaProfileData.size(); - for (String profileData : cnaProfileData.values()) { - double profileDataValue = Double.parseDouble(profileData); - if (profileDataValue >= 0.5 && profileDataValue < 0.6) { - count0506Pos++; - } - } - } - // there is data for 8 genes x 311 samples: - assertEquals(8 * 311, profileDataSize); - // simple check: there are 199 entries that have value between 0.5 and 0.6; - assertEquals(199, count0506Pos); - - // ===== check case lists - // study is set to generate global "all" case list, so check this: - // study has 2 lists: - DaoSampleList daoSampleList = new DaoSampleList(); - List sampleLists = daoSampleList.getAllSampleLists(cancerStudy.getInternalId()); - assertEquals(2, sampleLists.size()); - // for list "all" there are 826 samples expected: - SampleList allSampleList = daoSampleList.getSampleListByStableId("study_es_0_all"); - assertEquals("All cases in study", allSampleList.getName()); - - // there is a custom case list with 778 samples, and name "this is an optional custom case list" , - // so check this: - SampleList customSampleList = daoSampleList.getSampleListByStableId("study_es_0_custom"); - assertEquals("this is an optional custom case list", customSampleList.getName()); - - // ===== check mutational signature - String testMutationalSignatureStableIds = "mean_1"; - String testMutationalSignatureMolecularProfileIds = "study_es_0_mutational_signature"; - assertNotNull(DaoGeneticEntity.getGeneticEntityByStableId(testMutationalSignatureStableIds)); - // ENTITY_STABLE_ID name description TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 - // TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 - // TCGA-BH-A0HP-01 TCGA-BH-A18P-01 - // mean_1 ... ... ... 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 - GenericAssayService genericAssayService = applicationContext.getBean(GenericAssayService.class); - List mutationalSignatureData = genericAssayService.fetchGenericAssayData(Arrays.asList(testMutationalSignatureMolecularProfileIds), - Arrays.asList("TCGA-A1-A0SB-01", "TCGA-A1-A0SH-01"), Arrays.asList(testMutationalSignatureStableIds), PersistenceConstants.SUMMARY_PROJECTION); - assertEquals(2, mutationalSignatureData.size()); - assertEquals("0.370266873", mutationalSignatureData.get(0).getValue()); - assertEquals("0.022753384", mutationalSignatureData.get(1).getValue()); - - // ===== check GSVA data - // ... - String testGeneset = "GO_ATP_DEPENDENT_CHROMATIN_REMODELING"; - assertEquals(4, DaoGeneset.getGenesetByExternalId(testGeneset).getGenesetGeneIds().size()); - // scores: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 - // TCGA-A2-A04U-01 - // GO_ATP_DEPENDENT_CHROMATIN_REMODELING -0.293861251463613 -0.226227563676626 - // -0.546556962547473 -0.0811115513543749 0.56919171543422 - // using new api: - GenesetDataService genesetDataService = applicationContext.getBean(GenesetDataService.class); - List genesetData = genesetDataService.fetchGenesetData("study_es_0_gsva_scores", - "study_es_0_all", Arrays.asList(testGeneset)); - assertEquals(5, genesetData.size()); - - genesetData = genesetDataService.fetchGenesetData("study_es_0_gsva_scores", - Arrays.asList("TCGA-A1-A0SB-01", "TCGA-A1-A0SH-01"), Arrays.asList(testGeneset)); - assertEquals(2, genesetData.size()); - assertEquals(-0.293861251463613, Double.parseDouble(genesetData.get(0).getValue()), 0.00001); - assertEquals(-0.0811115513543749, Double.parseDouble(genesetData.get(1).getValue()), 0.00001); - - // ===== check treatment (profile) data - // ... - String testTreatment = "Irinotecan"; - assertNotNull(DaoGeneticEntity.getGeneticEntityByStableId(testTreatment)); - // ENTITY_STABLE_ID NAME DESCRIPTION URL TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 - // TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 - // TCGA-BH-A0HP-01 TCGA-BH-A18P-01 - // Irinotecan ... ... ... NA 0.080764666 NA 0.06704437 0.069568723 0.034992039 - // 0.740817904 0.209220141 - GenericAssayService treatmentDataService = applicationContext.getBean(GenericAssayService.class); - List treatmentData = treatmentDataService.getGenericAssayData("study_es_0_treatment_ic50", "study_es_0_all", Arrays.asList(testTreatment), PersistenceConstants.SUMMARY_PROJECTION); - assertEquals(8, treatmentData.size()); - assertEquals("NA", treatmentData.get(0).getValue()); - assertEquals(0.080764666, Double.parseDouble(treatmentData.get(1).getValue()), 0.00001); - - // ===== check study status - assertEquals(DaoCancerStudy.Status.AVAILABLE, DaoCancerStudy.getStatus("study_es_0")); - - } catch (Throwable t) { - ConsoleUtil.showWarnings(); - System.err.println("\nABORTED! " + t.toString()); - if (t.getMessage() == null) - t.printStackTrace(); - throw t; - } - } - - /** - * Loads the genes used by this test. - * - * @throws DaoException - * @throws IOException - * @throws JsonMappingException - * @throws JsonParseException - * - */ - private void loadGenes() throws DaoException, JsonParseException, JsonMappingException, IOException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - - // read the respective genes.json and genesaliases.json files from the system - // test study_es_0 to - // load the genes and genes aliases into the DB for which this scenario is - // written: - - Map> aliasesMap = new HashMap>(); - InputStream inputStream = new FileInputStream( - "src/test/scripts/test_data/api_json_system_tests/genesaliases.json"); - // parse json file: - ObjectMapper mapper = new ObjectMapper(); - TestGeneAlias[] genesAliases = mapper.readValue(inputStream, TestGeneAlias[].class); - - // build up aliases map: - for (TestGeneAlias testGeneAlias : genesAliases) { - Set aliases = aliasesMap.get(testGeneAlias.entrezGeneId); - if (aliases == null) { - aliases = new HashSet(); - aliasesMap.put(testGeneAlias.entrezGeneId, aliases); - } - aliases.add(testGeneAlias.geneAlias); - } - - inputStream = new FileInputStream("src/test/scripts/test_data/api_json_system_tests/genes.json"); - // parse json file: - mapper = new ObjectMapper(); - TestGene[] genes = mapper.readValue(inputStream, TestGene[].class); - - // add genes to db: - for (TestGene testGene : genes) { - CanonicalGene gene = new CanonicalGene(testGene.entrezGeneId, testGene.hugoGeneSymbol); - // get aliases from map: - gene.setAliases(aliasesMap.get(testGene.entrezGeneId)); - daoGene.addGene(gene); - } - - MySQLbulkLoader.flushAll(); - - } - - /** - * Loads a gene panel used by this test. - * - */ - private void loadGenePanel() throws Exception { - ImportGenePanel gp = new ImportGenePanel(null); - gp.setFile(new File("src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel1.txt")); - gp.importData(); - gp.setFile(new File("src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel2.txt")); - gp.importData(); - } - - @JsonIgnoreProperties(ignoreUnknown = true) - static class TestGene { - @JsonProperty("hugoGeneSymbol") - String hugoGeneSymbol; - @JsonProperty("entrezGeneId") - int entrezGeneId; - } - - @JsonIgnoreProperties(ignoreUnknown = true) - static class TestGeneAlias { - @JsonProperty("gene_alias") - String geneAlias; - @JsonProperty("entrezGeneId") - int entrezGeneId; - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestMutationFilter.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestMutationFilter.java deleted file mode 100644 index 691c1756431..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestMutationFilter.java +++ /dev/null @@ -1,193 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.scripts; - -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertTrue; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ExtendedMutation; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -/** - * JUnit tests for MutationFilter class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestMutationFilter { - - @Before - public void setUp() throws DaoException { - // load genes - loadGene( "FOO", 3L ); - loadGene( "BAR", 234L ); - loadGene( "BIG", 234234L ); - } - - - @Test - public void testNoWhitelists( ){ - MutationFilter myMutationFilter = new MutationFilter( ); - alwaysRejectTheseMutations( myMutationFilter ); - - // accept all of these, because a MutationFilter without whitelists - // accepts all mutations other than Silent, LOH, Intron and Wildtype mutations - // not valid && somatic - nowTestAcceptMutation( - myMutationFilter, - true, - 4L, - "Unknown", // validationStatus, - "Unknown", // mutationStatus, - "Unknown" // mutationType - ); - - // valid but not somatic - nowTestAcceptMutation( - myMutationFilter, - true, - 4L, - "Valid", // validationStatus, - "Unknown", // mutationStatus, - "Unknown" // mutationType - ); - - // not valid but somatic - nowTestAcceptMutation( - myMutationFilter, - true, - 4L, - "Unknown", // validationStatus, - "Somatic", // mutationStatus, - "Unknown" // mutationType - ); - - // valid && somatic - nowTestAcceptMutation( - myMutationFilter, - true, - 4L, - "Valid", // validationStatus, - "Somatic", // mutationStatus, - "Unknown" // mutationType - ); - - // valid && somatic - // testing safeStringTest() - nowTestAcceptMutation( - myMutationFilter, - true, - 4L, - "vALid_as_hell", // validationStatus, - "SOMatic_for_sure", // mutationStatus, - "Unknown" // mutationType - ); - - } - - - private void nowTestAcceptMutation( - MutationFilter myMutationFilter, - boolean expectedResult, - long entrezGeneId, - String validationStatus, - String mutationStatus, - String mutationType - ) { - CanonicalGene gene = new CanonicalGene(entrezGeneId, "XXX"); - ExtendedMutation anExtendedMutation = new ExtendedMutation( - gene, // gene, - validationStatus, // validationStatus, - mutationStatus, // mutationStatus, - mutationType // mutationType - ); - if (expectedResult) { - assertTrue(myMutationFilter.acceptMutation(anExtendedMutation, null)); - } else { - assertFalse(myMutationFilter.acceptMutation(anExtendedMutation, null)); - } - } - - private void alwaysRejectTheseMutations(MutationFilter myMutationFilter){ - - // REJECT: Silent, LOH, Intron and Wildtype mutations - nowTestAcceptMutation( - myMutationFilter, - false, - 1L, - "Unknown", - "Unknown", - "Silent" - ); - nowTestAcceptMutation( - myMutationFilter, - false, - 1L, - "Unknown", - "Unknown", - "Intron" - ); - nowTestAcceptMutation( - myMutationFilter, - false, - 1L, - "Unknown", - "LOH", - "Unknown" - ); - nowTestAcceptMutation( - myMutationFilter, - false, - 1L, - "Unknown", - "Wildtype", - "Unknown" - ); - - } - - private void loadGene( String geneSymbol, long geneID ) throws DaoException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - daoGene.addGene(new CanonicalGene( geneID, geneSymbol )); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestNormalizeExpressionLevels.java b/core/src/test/java/org/mskcc/cbio/portal/scripts/TestNormalizeExpressionLevels.java deleted file mode 100644 index 0fd871ef871..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/scripts/TestNormalizeExpressionLevels.java +++ /dev/null @@ -1,121 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal.scripts; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; - -import static org.junit.Assert.*; - -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import java.io.BufferedReader; -import java.io.InputStreamReader; -import java.net.URL; -import java.util.ArrayList; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestNormalizeExpressionLevels { - - private String validationFile; - private String[] args; - - @Before - public void initialize() { - URL url = this.getClass().getResource("/correct_data_mRNA_ZbyNorm.txt"); - validationFile = url.getFile().toString(); - - URL url1 = TestNormalizeExpressionLevels.class.getResource("/test_all_thresholded.by_genes.txt"); - URL url2 = TestNormalizeExpressionLevels.class.getResource("/test_PR_GDAC_CANCER.medianexp.txt"); - URL url3 = TestNormalizeExpressionLevels.class.getResource("/data_mRNA_ZbyNorm.txt"); - - args = new String[] { - url1.getFile().toString(), - url2.getFile().toString(), - url3.getFile().toString(), - NormalizeExpressionLevels.TCGA_NORMAL_SUFFIX, "4" }; - } - - // TBD: change this to use getResourceAsStream() - - @Test - public void testNormalizeExpressionLevels() { - - try { - - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - daoGene.addGene(new CanonicalGene(65985, "AACS")); - daoGene.addGene(new CanonicalGene(63916, "ELMO2")); - daoGene.addGene(new CanonicalGene(9240, "PNMA1")); - daoGene.addGene(new CanonicalGene(6205, "RPS11")); - daoGene.addGene(new CanonicalGene(7157, "TP53")); - daoGene.addGene(new CanonicalGene(367, "AR")); - NormalizeExpressionLevels.main(args); - // compare with correct - String line; - Process p = Runtime.getRuntime().exec( - "diff" + " " + validationFile + " " + args[2]); - BufferedReader input = new BufferedReader(new InputStreamReader( - p.getInputStream())); - while ((line = input.readLine()) != null) { - assertEquals("", line); - } - input.close(); - - } catch (Exception e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } - - assertTrue(NormalizeExpressionLevels.isNormal("TCGA-A7-A0CG-11A-11D-A011-01")); - assertFalse(NormalizeExpressionLevels.isNormal("TCGA-A7-A0CG-01A-11D-A011-01")); - } - - @Test - public void testJoin() { - ArrayList l = new ArrayList(); - l.add("out"); - l.add("of"); - l.add("order"); - assertEquals("out-of-order", NormalizeExpressionLevels.join(l, "-")); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/servlet/MyPrintWriter.java b/core/src/test/java/org/mskcc/cbio/portal/servlet/MyPrintWriter.java deleted file mode 100644 index 4a351a5fca3..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/servlet/MyPrintWriter.java +++ /dev/null @@ -1,45 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.StringWriter; - -/** - * A JUnit-related class required for NullHttpServletResponse. - */ -public class MyPrintWriter extends java.io.PrintWriter { - public MyPrintWriter(StringWriter myStringWriter) { - super(myStringWriter); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/servlet/NullHttpServletRequest.java b/core/src/test/java/org/mskcc/cbio/portal/servlet/NullHttpServletRequest.java deleted file mode 100644 index bc8419e35e2..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/servlet/NullHttpServletRequest.java +++ /dev/null @@ -1,242 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.UnsupportedEncodingException; -import java.security.Principal; -import java.util.Collection; -import java.util.Enumeration; -import java.util.Hashtable; -import java.util.Locale; -import java.util.Map; - -import javax.servlet.ServletRequest; -import javax.servlet.ServletResponse; -import javax.servlet.ServletException; -import javax.servlet.ServletContext; -import javax.servlet.RequestDispatcher; -import javax.servlet.ServletInputStream; -import javax.servlet.DispatcherType; -import javax.servlet.AsyncContext; -import javax.servlet.http.Cookie; -import javax.servlet.http.Part; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.servlet.http.HttpSession; - -/** - * Useful for unit testing code that uses HttpServletRequest. - * From http://www.jguru.com/faq/view.jsp?EID=110660 - */ -public class NullHttpServletRequest implements HttpServletRequest{ - private Hashtable parameters = new Hashtable(); - - public void setParameter(String key, String value) { - parameters.put(key, value); - } - - public String getParameter(String key) { - return (String)this.parameters.get(key); - } - - public Enumeration getParameterNames(){ - return this.parameters.keys(); - } - - public Cookie[] getCookies() {return null;} - public String getMethod(){return null;} - public String getRequestURI(){return null;} - public String getServletPath(){return null;} - public String getPathInfo(){return null;} - public String getPathTranslated(){return null;} - public String getQueryString(){return null;} - public String getRemoteUser(){return null;} - public String getAuthType(){return null;} - public String getHeader(String name){return null;} - public int getIntHeader(String name){return 0;} - public long getDateHeader(String name){return 0;} - public Enumeration getHeaderNames(){return null;} - public HttpSession getSession(boolean create){return null;} - public String getRequestedSessionId(){return null;} - public boolean isRequestedSessionIdValid(){return false;} - public boolean isRequestedSessionIdFromCookie(){return false;} - public boolean isRequestedSessionIdFromUrl(){return false;} - public int getContentLength(){return 0;} - public String getContentType(){return null;} - public String getProtocol(){return null;} - public String getScheme(){return null;} - public String getServerName(){return null;} - public int getServerPort(){return 0;} - public String getRemoteAddr(){return null;} - public String getRemoteHost(){return null;} - public String getRealPath(String path){return null;} - public ServletInputStream getInputStream() throws IOException{return null;} - public String[] getParameterValues(String name){return null;} - public Enumeration getAttributeNames(){return null;} - public Object getAttribute(String name){return null;} - public HttpSession getSession(){return null;} - public BufferedReader getReader() throws IOException{return null;} - public String getCharacterEncoding(){return null;} - public void setAttribute(String name, Object o) {} - public boolean isRequestedSessionIdFromURL() {return false;} - - public Locale getLocale() { - // TODO Auto-generated method stub - return null; - } - - public Enumeration getLocales() { - // TODO Auto-generated method stub - return null; - } - - public Map getParameterMap() { - // TODO Auto-generated method stub - return null; - } - - public RequestDispatcher getRequestDispatcher(String arg0) { - // TODO Auto-generated method stub - return null; - } - - public boolean isSecure() { - // TODO Auto-generated method stub - return false; - } - - public void removeAttribute(String arg0) { - // TODO Auto-generated method stub - - } - - public void setCharacterEncoding(String arg0) throws UnsupportedEncodingException { - // TODO Auto-generated method stub - - } - - public String getContextPath() { - // TODO Auto-generated method stub - return null; - } - - public Enumeration getHeaders(String arg0) { - // TODO Auto-generated method stub - return null; - } - - public StringBuffer getRequestURL() { - // TODO Auto-generated method stub - return null; - } - - public Principal getUserPrincipal() { - // TODO Auto-generated method stub - return null; - } - - public boolean isUserInRole(String arg0) { - // TODO Auto-generated method stub - return false; - } - - public Part getPart(String s) { - return null; - } - - public Collection getParts() { - return null; - } - - public void logout() throws ServletException { - } - - public void login(String username, String password) { - } - - public boolean authenticate(HttpServletResponse response) throws IOException, ServletException { - return false; - } - - public String changeSessionId() { - return null; - } - - public DispatcherType getDispatcherType() { - return null; - } - - public AsyncContext getAsyncContext() { - return null; - } - - public boolean isAsyncSupported() { - return false; - } - - public boolean isAsyncStarted() { - return false; - } - - public AsyncContext startAsync(ServletRequest request,ServletResponse response) { - return null; - } - - public AsyncContext startAsync() { - return null; - } - - public ServletContext getServletContext() { - return null; - } - - public int getLocalPort() { - return 0; - } - - public String getLocalAddr() { - return null; - } - - public String getLocalName() { - return null; - } - - public int getRemotePort() { - return 0; - } - public long getContentLengthLong(){return 0;} - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/servlet/NullHttpServletResponse.java b/core/src/test/java/org/mskcc/cbio/portal/servlet/NullHttpServletResponse.java deleted file mode 100644 index 8bca89597eb..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/servlet/NullHttpServletResponse.java +++ /dev/null @@ -1,244 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -/* - * from: http://www.java2s.com/Open-Source/Java-Document/Content-Management-System/ - * TransferCM/com/methodhead/shim/NullHttpServletResponse.java.htm - */ - -/* - * Copyright (C) 2006 Methodhead Software LLC. All rights reserved. - * - * This file is part of TransferCM. - * - * TransferCM is free software; you can redistribute it and/or modify it under the - * terms of the GNU General Public License as published by the Free Software - * Foundation; either version 2 of the License, or (at your option) any later - * version. - * - * TransferCM is distributed in the hope that it will be useful, but WITHOUT ANY - * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS - * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more - * details. - * - * You should have received a copy of the GNU General Public License along with - * TransferCM; if not, write to the Free Software Foundation, Inc., 51 Franklin St, - * Fifth Floor, Boston, MA 02110-1301 USA - */ - -import javax.servlet.http.HttpServletResponse; -import javax.servlet.ServletResponse; -import javax.servlet.ServletOutputStream; -import java.util.Locale; -import java.util.Collection; -import java.io.PrintWriter; -import java.io.StringWriter; - -import javax.servlet.http.Cookie; - -/** - * A servlet response that discards any output. All methods of this class are - * empty implementations. - */ -public class NullHttpServletResponse implements HttpServletResponse { - - // constructors ///////////////////////////////////////////////////////////// - - public NullHttpServletResponse() { - servletOutputStream = new NullServletOutputStream(); - } - - // constants //////////////////////////////////////////////////////////////// - - // classes ////////////////////////////////////////////////////////////////// - - /** - * An OutputStream implementation for JUnit tests. - */ - private static class NullServletOutputStream extends - ServletOutputStream { - - public void write(int b) { - // do nothing - } - public boolean isReady() { - return false; - } - } - - // methods ////////////////////////////////////////////////////////////////// - - public void flushBuffer() { - } - - public int getBufferSize() { - return 0; - } - - public String getCharacterEncoding() { - return ""; - } - - public Locale getLocale() { - return Locale.getDefault(); - } - - public ServletOutputStream getOutputStream() { - return servletOutputStream; - } - - public PrintWriter getWriter() { - return new MyPrintWriter( myStringWriter ); -// return new PrintWriter( System.err ); -// was return new PrintWriter(servletOutputStream); - } - - public boolean isCommitted() { - return false; - } - - public void reset() { - } - - public void resetBuffer() { - } - - public void setBufferSize(int size) { - } - - public void setContentLength(int len) { - } - - public void setContentType(String type) { - } - - public void setLocale(Locale loc) { - } - - public void setResponse(ServletResponse response) { - } - - public void addCookie(Cookie cookie) { - } - - public void addDateHeader(String name, long date) { - } - - public void addHeader(String name, String value) { - } - - public void addIntHeader(String name, int value) { - } - - public boolean containsHeader(String name) { - return false; - } - - public String encodeRedirectUrl(String url) { - return url; - } - - public String encodeRedirectURL(String url) { - return url; - } - - public String encodeUrl(String url) { - return url; - } - - public String encodeURL(String url) { - return url; - } - - public void sendError(int sc) { - } - - public void sendError(int sc, String msg) { - } - - public void sendRedirect(String location) { - } - - public void setDateHeader(String name, long date) { - } - - public void setHeader(String name, String value) { - } - - public void setIntHeader(String name, int value) { - } - - public void setStatus(int sc) { - } - - public void setStatus(int sc, String sm) { - } - - public Collection getHeaderNames() { - return null; - } - - public Collection getHeaders(String name) { - return null; - } - - public int getStatus() { - return 0; - } - - public void setContentLengthLong(long len) { - } - - public void setCharacterEncoding(String s) { - } - - public String getContentType() { - return null; - } - - // properties /////////////////////////////////////////////////////////////// - - private ServletOutputStream servletOutputStream = null; // new NullServletOutputStream();; - private StringWriter myStringWriter = new StringWriter(); - - public String getOutput(){ - return myStringWriter.toString(); - } - - public String getHeader(String name) { - return null; - } - - // attributes /////////////////////////////////////////////////////////////// -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestClinicalJSON.java b/core/src/test/java/org/mskcc/cbio/portal/servlet/TestClinicalJSON.java deleted file mode 100644 index 1605c861022..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestClinicalJSON.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - - -import org.mskcc.cbio.portal.model.ClinicalData; -import org.mskcc.cbio.portal.model.ClinicalAttribute; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletRequestWrapper; -import java.util.Map; - -import static org.junit.Assert.*; - -public class TestClinicalJSON { - - public void testReflectToMap() { - ClinicalJSON clinicalJSON = new ClinicalJSON(); - - Map map = clinicalJSON.reflectToMap( new ClinicalData(-1, "caseId", "attrId", "attrVal") ); - - assertTrue( map.get("attr_id").equals("attrId") ); - assertTrue( map.get("attr_val").equals("attrVal") ); -// assertTrue( map.get("cancer_study_id").equals("-1") ); - assertTrue( map.get("case_id").equals("caseId") ); - - map = clinicalJSON.reflectToMap(new ClinicalAttribute("attrId", "displayName", "description", "datatype", true, "1", 1)); - assertTrue( map.get("attr_id").equals("attrId") ); - assertTrue( map.get("display_name").equals("displayName") ); - assertTrue( map.get("description").equals("description") ); - assertTrue( map.get("datatype").equals("datatype") ); - - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestGisticJSON.java b/core/src/test/java/org/mskcc/cbio/portal/servlet/TestGisticJSON.java deleted file mode 100644 index 86db4b7cb70..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestGisticJSON.java +++ /dev/null @@ -1,76 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - - -import org.mskcc.cbio.portal.dao.DaoGistic; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.Gistic; -import org.mskcc.cbio.portal.servlet.GisticJSON; - -import javax.servlet.http.HttpServletRequest; -import java.util.ArrayList; -import java.util.Map; - -import static org.junit.Assert.*; - -public class TestGisticJSON { - - public void testGisticJSON() { - - // test JSON map - ArrayList genes = new ArrayList(); - - CanonicalGene niki = new CanonicalGene("NIKI"); - CanonicalGene jj = new CanonicalGene("JJ"); - CanonicalGene tp53 = new CanonicalGene("TP53"); - - genes.add(niki); - genes.add(jj); - genes.add(tp53); - - Gistic gistic = new Gistic(1, 7, "1q11.1", 10000, 10001, 0.05d, genes, Gistic.AMPLIFIED); - - Map map = null; - map = GisticJSON.Gistic_toMap(gistic); - - assertTrue(map.get("chromosome").equals(7)); - assertTrue(map.get("peakStart").equals(10000)); - assertTrue(map.get("peakEnd").equals(10001)); -// System.out.println(map.get("genes_in_ROI")); -// assertTrue(map.get("genes_in_ROI").equals(genes)); - assertTrue(map.get("qval").equals(0.05d)); - assertTrue(map.get("ampdel").equals(Gistic.AMPLIFIED)); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestMutSigJSON.java b/core/src/test/java/org/mskcc/cbio/portal/servlet/TestMutSigJSON.java deleted file mode 100644 index 4da7c31b358..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestMutSigJSON.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertTrue; - -import java.util.HashSet; - -import org.junit.Test; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.MutSig; - -import static org.junit.Assert.*; - -public class TestMutSigJSON { - - @Test - public void testMutSigtoMap() - { - // make a stupid test - CanonicalGene canonicalGene = new CanonicalGene(12, "hello", new HashSet()); - - // test one of the values of the map. probably a waste of time - MutSig mutsig = new MutSig(1, canonicalGene, 1, 502500, 20, 1E-11f, 1E-8f); - assertTrue(!MutSigJSON.MutSigtoMap(mutsig).isEmpty()); - assertTrue(MutSigJSON.MutSigtoMap(mutsig).get("qval").equals(1E-8f)); - - // should now reject because qval is too large - mutsig = new MutSig(1, canonicalGene, 1, 502500, 20, 12f, 12f); - assertFalse(MutSigJSON.MutSigtoMap(mutsig).isEmpty()); - - // sometimes the qvals comes in a funny format - mutsig = new MutSig(1, canonicalGene, 1, 502500, 20, 1E-8f, 1E-8f); - assertTrue(!MutSigJSON.MutSigtoMap((mutsig)).isEmpty()); - assertTrue(MutSigJSON.MutSigtoMap(mutsig).get("qval").equals(1E-8f)); - - // untested : functionality of DoGet method - // - // this is the most important part! - // to test this we would have to do some work to simulate an httpServletRequest - // I've been doing this from the browser - } -} - diff --git a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestWebService.java b/core/src/test/java/org/mskcc/cbio/portal/servlet/TestWebService.java deleted file mode 100644 index c3ea8b20954..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/servlet/TestWebService.java +++ /dev/null @@ -1,389 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.servlet; - -import java.io.*; -import java.util.*; - -import javax.servlet.ServletException; - -import org.junit.After; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; -import org.springframework.security.core.userdetails.UserDetails; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; -import static org.easymock.EasyMock.*; - -/** - * JUnit test for WebService class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestWebService { - - private CancerStudy publicCancerStudy; - private CancerStudy privateCancerStudy1; - private CancerStudy privateCancerStudy2; - private User user1; - private User user2; - private String cleartextPwd; - private GeneticProfile privateGeneticProfile; - private GeneticProfile publicGeneticProfile; - - private AccessControl oldAccessControl; - - @Before - public void setUp() throws DaoException { - oldAccessControl = SpringUtil.getAccessControl(); - - // This is truly awful, but basically mocks the access control. The API for - // isAccessibleCancerStudy is a bit silly, as it's intended to be boolean - // but is really a list. So we mock with a non-empty list with a null in it. - - AccessControl control = createMock(AccessControl.class); - List mockTrue = new ArrayList(); - mockTrue.add(null); - UserDetails mockUserDetails = createMock(UserDetails.class); - expect(control.isAccessibleCancerStudy(isA(String.class))).andStubReturn(mockTrue); - expect(control.getUserDetails()).andStubReturn(mockUserDetails); - replay(control); - new SpringUtil().setAccessControl(control); - - DaoCancerStudy.reCacheAll(); - } - - @After - public void tearDown() { - new SpringUtil().setAccessControl(oldAccessControl); - } - - @Test - public void testWebServiceGetTypesOfCancer() throws Exception { - - WebService webService = new WebService(); - - // null request - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - NullHttpServletResponse aNullHttpServletResponse = new NullHttpServletResponse(); - webService.processClient( aNullHttpServletRequest, aNullHttpServletResponse ); - assertTrue( aNullHttpServletResponse.getOutput().contains("Error: you must specify a cmd parameter.\n") ); - - checkRequest( mkStringArray( WebService.CMD, "getTypesOfCancer" ), - mkStringArray( "type_of_cancer_id\tname", "acbc\tAdenoid Cystic Breast Cancer" ) ); - } - - - @Test - public void testWebServiceBadCommand() throws Exception { - - // bad command - checkRequest( mkStringArray( WebService.CMD, "badCommand" ), "Error: 'badCommand' not a valid command." ); - - /* TBD: Recoded when we provide granualar access - // public studies - String[] publicStudies = mkStringArray( "cancer_study_id\tname\tdescription", - studyLine( publicCancerStudy ) ); - checkRequest( mkStringArray( WebService.CMD, "getCancerStudies" ), publicStudies ); - */ - } - - @Test - public void testWebServiceGetGeneticProfilesNoStudy() throws Exception { - - // no cancer_study_id for "getGeneticProfiles" - checkRequest( mkStringArray( WebService.CMD, "getGeneticProfiles" ), - mkStringArray( "Error: " + "No cancer study (cancer_study_id), or genetic profile (genetic_profile_id) " + - "or case list or (case_list) case set (case_set_id) provided by request. " + - "Please reformulate request." ) ); - } - - @Test - public void testWebServiceGetGeneticProfiles() throws Exception { - - - checkRequest( mkStringArray( WebService.CMD, "getGeneticProfiles", - WebService.CANCER_STUDY_ID, CancerStudy.NO_SUCH_STUDY +"" ), - mkStringArray( "Error: " + "Problem when identifying a cancer study for the request." ) ); - } - - @Test - public void testWebService() throws Exception { - - // getGeneticProfiles for public study - String[] publicGenePro = mkStringArray( - "genetic_profile_id\tgenetic_profile_name\tgenetic_profile_description\t" + - "cancer_study_id\tgenetic_alteration_type\tshow_profile_in_analysis_tab", - "study_tcga_pub_gistic\tPutative copy-number alterations from GISTIC\tPutative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.\t1\tCOPY_NUMBER_ALTERATION\ttrue"); - - checkRequest( mkStringArray( - WebService.CMD, "getGeneticProfiles", - WebService.CANCER_STUDY_ID, "study_tcga_pub"), - publicGenePro ); - - /* TBD: Recoded when we provide granualar access - // with bad key - checkRequest( mkStringArray( - WebService.CMD, "getGeneticProfiles", - WebService.SECRET_KEY, "not_good_key", - WebService.CANCER_STUDY_ID, publicCancerStudy.getCancerStudyStableId()), - publicGenePro ); - - // missing email address for private study - String deniedError = "Error: User cannot access the cancer study called 'name'." + - "Please provide credentials to access private data."; - checkRequest( mkStringArray( WebService.CMD, "getGeneticProfiles", WebService.CANCER_STUDY_ID, "study1" ), - mkStringArray( deniedError ) ); - - // denied for "getGeneticProfiles"; no key - checkRequest( mkStringArray( - WebService.CMD, "getGeneticProfiles", - WebService.CANCER_STUDY_ID, "study1", - WebService.EMAIL_ADDRESS, user1.getEmail() - ), - mkStringArray( deniedError ) ); - - // denied for "getGeneticProfiles"; bad key - checkRequest( mkStringArray( - WebService.CMD, "getGeneticProfiles", - WebService.SECRET_KEY, "not_good_key", - WebService.CANCER_STUDY_ID, "study1", - WebService.EMAIL_ADDRESS, user1.getEmail() - ), - mkStringArray( deniedError ) ); - - // getGeneticProfiles works for private study - String[] privateGenePro1 = mkStringArray( "genetic_profile_id\tgenetic_profile_name\tgenetic_profile_description" - + "\tcancer_study_id\tgenetic_alteration_type\tshow_profile_in_analysis_tab", - "stableIdPrivate\tprofileName\tprofileDescription\t1\tCOPY_NUMBER_ALTERATION\ttrue"); - checkRequest( mkStringArray( - WebService.CMD, "getGeneticProfiles", - WebService.SECRET_KEY, cleartextPwd, - WebService.CANCER_STUDY_ID, "study1", - WebService.EMAIL_ADDRESS, user1.getEmail() - ), - mkStringArray( privateGenePro1 ) ); - */ - } - - private void checkRequest( String[] requestFields, String... responseLines ) throws IOException, ServletException{ - checkRequest( false, requestFields, responseLines ); - } - - /** - * check a request - * @param debug if true, print servlet's output - * @param requestFields array embedded with name, value pairs for the httpRequest - * @param responseLines array of expected responses - * @throws IOException - * @throws ServletException - */ - private void checkRequest( boolean debug, String[] requestFields, String... responseLines ) throws IOException, ServletException{ - WebService webService = new WebService(); - webService.init(); - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - NullHttpServletResponse aNullHttpServletResponse = new NullHttpServletResponse(); - for( int i=0; i studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertEquals( 0, studies.size() ); - } - - @Test - public void testGetCancerStudyIDInvalid() throws Exception { - - // example getGeneticProfiles request - HashSet studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - aNullHttpServletRequest.setParameter(WebService.CANCER_STUDY_ID, "HI"); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertTrue(studies.isEmpty()); - } - - @Test - public void testGetCancerStudyIDNumeric() throws Exception { - - HashSet studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - aNullHttpServletRequest.setParameter(WebService.CANCER_STUDY_ID, "33"); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertTrue(studies.isEmpty()); - } - - @Test - public void testGetCancerStudyIDs() throws Exception { - - HashSet studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - aNullHttpServletRequest.setParameter(WebService.CANCER_STUDY_ID, "study_tcga_pub"); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertEquals( 1, studies.size() ); - assertTrue( studies.contains("study_tcga_pub")); - } - - @Test - public void testGetCancerStudySetIDs() throws Exception { - // example getProfileData, getMutationData, ... request with existing CASE_SET_ID - HashSet studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - aNullHttpServletRequest = new NullHttpServletRequest(); - aNullHttpServletRequest.setParameter(WebService.CASE_SET_ID, "HI"); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertTrue(studies.isEmpty()); - } - - @Test - public void testGetCancerStudySetIDList() throws Exception { - - HashSet studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - - CancerStudy study = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - DaoSampleList daoSampleList = new DaoSampleList(); - SampleList sampleList = new SampleList(); - sampleList.setName("Name0"); - sampleList.setDescription("Description0"); - sampleList.setStableId("stable_0"); - sampleList.setCancerStudyId(study.getInternalId()); - sampleList.setSampleListCategory(SampleListCategory.ALL_CASES_WITH_CNA_DATA); - ArrayList samples = new ArrayList(); - samples.add("TCGA-1-S1"); - samples.add("TCGA-2-S1"); - sampleList.setSampleList(samples); - daoSampleList.addSampleList(sampleList); - - aNullHttpServletRequest.setParameter(WebService.CASE_SET_ID, "stable_0" ); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertFalse(studies.isEmpty()); - } - - @Test - public void testGetCancerStudySetProfileID() throws Exception { - - HashSet studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - - // test situations when patient_set_id not provided, but profile_id is, as by getProfileData - aNullHttpServletRequest = new NullHttpServletRequest(); - aNullHttpServletRequest.setParameter(WebService.GENETIC_PROFILE_ID, "study_tcga_pub_mutations" ); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertEquals( 1, studies.size() ); - assertTrue( studies.contains("study_tcga_pub")); - } - - @Test - public void testGetCancerStudySetPrivateProfile() throws Exception { - - HashSet studies; - NullHttpServletRequest aNullHttpServletRequest = new NullHttpServletRequest(); - - // test situation when multiple profile_ids provided, as by getProfileData - aNullHttpServletRequest = new NullHttpServletRequest(); - - // test situations when patient_set_id not provided, but profile_id is, as by getProfileData - aNullHttpServletRequest = new NullHttpServletRequest(); - aNullHttpServletRequest.setParameter(WebService.GENETIC_PROFILE_ID, "study_tcga_pub_gistic,study_tcga_pub_mutations" ); - studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); - assertEquals( 1, studies.size() ); - assertTrue( studies.contains("study_tcga_pub")); - - // Removed old test logic for public and private profiles since (a) the tests only check the private - // profiles, and (b) this requires better test data - -// aNullHttpServletRequest.setParameter( -// WebService.MOLECULAR_PROFILE_ID, privateGeneticProfile.getStableId() + "," -// + publicGeneticProfile.getStableId() ); -// studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); -// assertTrue( studies.contains(DaoCancerStudy.getCancerStudyByInternalId -// (privateGeneticProfile.getCancerStudyId()).getCancerStudyStableId())); -// assertTrue( studies.contains(DaoCancerStudy.getCancerStudyByInternalId -// (privateGeneticProfile.getCancerStudyId()).getCancerStudyStableId())); - } - - // TODO Add these originally commented out tests - // test situation when a case_list is explicitly provided, as in getClinicalData, etc. -// String c1 = "TCGA-12345"; -// DaoCaseProfile.addSampleProfile( c1, publicGeneticProfile.getGeneticProfileId()); -// aNullHttpServletRequest = new NullHttpServletRequest(); -// aNullHttpServletRequest.setParameter( WebService.CASE_LIST, c1 ); -// studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); -// assertTrue( studies.contains(DaoCancerStudy.getCancerStudyByInternalId -// (publicGeneticProfile.getCancerStudyId()).getCancerStudyStableId())); -// -// String c2 = "TCGA-54321"; -// DaoCaseProfile.addSampleProfile( c2, privateGeneticProfile.getGeneticProfileId() ); -// aNullHttpServletRequest = new NullHttpServletRequest(); -// aNullHttpServletRequest.setParameter( WebService.CASE_LIST, c1 + "," + c2 ); -// studies = WebserviceParserUtils.getCancerStudyIDs(aNullHttpServletRequest); -// assertTrue( studies.contains(DaoCancerStudy.getCancerStudyByInternalId -// (privateGeneticProfile.getCancerStudyId()).getCancerStudyStableId())); -// assertTrue( studies.contains(DaoCancerStudy.getCancerStudyByInternalId -// (publicGeneticProfile.getCancerStudyId()).getCancerStudyStableId())); - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/stats/TestFisherExact.java b/core/src/test/java/org/mskcc/cbio/portal/stats/TestFisherExact.java deleted file mode 100644 index 06377765dfe..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/stats/TestFisherExact.java +++ /dev/null @@ -1,45 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.stats; - -import junit.framework.TestCase; -import org.mskcc.cbio.portal.stats.FisherExact; - -public class TestFisherExact extends TestCase { - - public void testFisherExact() { - FisherExact fisher = new FisherExact(43 + 2 + 17 + 7); - double p = fisher.getTwoTailedP(43, 2, 17, 7); - assertEquals(0.006653, p, 0.00001); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/stats/TestOddsRatio.java b/core/src/test/java/org/mskcc/cbio/portal/stats/TestOddsRatio.java deleted file mode 100644 index 108fdb5785e..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/stats/TestOddsRatio.java +++ /dev/null @@ -1,78 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.stats; - -import junit.framework.TestCase; -import org.mskcc.cbio.portal.model.ProfileData; -import org.mskcc.cbio.portal.model.ProfileDataSummary; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintSpecification; -import org.mskcc.cbio.portal.util.ProfileMerger; -import org.mskcc.cbio.io.WebFileConnect; -import org.mskcc.cbio.portal.util.ZScoreUtil; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.GeneticAlterationType; - -import java.io.File; -import java.io.IOException; -import java.util.ArrayList; - -public class TestOddsRatio extends TestCase { - - public void testFisherExact() throws IOException { - ArrayList profileList = new ArrayList(); - - GeneticProfile profile0 = - new GeneticProfile("gbm", 1, - GeneticAlterationType.COPY_NUMBER_ALTERATION, "DISCRETE", - "CNA", "CNA", true); - // TBD: change this to use getResourceAsStream() - String matrix0[][] = WebFileConnect.retrieveMatrix(new File("target/test-classes/cna_sample2.txt")); - ProfileData data0 = new ProfileData(profile0, matrix0); - profileList.add(data0); - - String[] genes = { "BRCA1", "BRCA2" }; - OncoPrintSpecification anOncoPrintSpecification = new OncoPrintSpecification( genes ); - - ProfileMerger merger = new ProfileMerger(profileList); - ProfileData mergedProfile = merger.getMergedProfile(); - ProfileDataSummary pDataSummary = new ProfileDataSummary(mergedProfile, anOncoPrintSpecification, - ZScoreUtil.Z_SCORE_THRESHOLD_DEFAULT, ZScoreUtil.RPPA_SCORE_THRESHOLD_DEFAULT); - - OddsRatio oddsRatio = new OddsRatio(pDataSummary, "BRCA1", "BRCA2"); - double oddsRatioValue = oddsRatio.getOddsRatio(); - double p = oddsRatio.getTwoTailedP(); - assertEquals(0.16666, oddsRatioValue, 0.0001); - assertEquals(0.1698, p, 0.0001); - //System.out.println (oddsRatio.getRCommand()); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestAccessControl.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestAccessControl.java deleted file mode 100644 index c0ee81bba39..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestAccessControl.java +++ /dev/null @@ -1,140 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - - -import java.io.IOException; - -import org.junit.Test; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.User; - -/** - * JUnit test for AccessControl class. - */ -public class TestAccessControl { - - private CancerStudy publicCancerStudy; - private CancerStudy privateCancerStudy1; - private CancerStudy privateCancerStudy2; - private User user1; - private User user2; - private String clearTextKey; - - @Test - public void testVariousUtilities() throws Exception { - /* TBD: Recoded when we provide granualar access - - setUpDBMS(); - - UserAccessRight userAccessRight = new UserAccessRight(user1.getEmail(), privateCancerStudy1.getInternalId()); - DaoUserAccessRight.addUserAccessRight(userAccessRight); - - userAccessRight = new UserAccessRight(user2.getEmail(), privateCancerStudy2.getInternalId()); - DaoUserAccessRight.addUserAccessRight(userAccessRight); - - // test accessControl.checkAccess - // assertFalse( accessControl.checkAccess( "", "", CancerStudy.NO_SUCH_STUDY ) ); - - // test access to a public study (id = 3) - assertTrue(accessControl.checkAccess("", "", publicCancerStudy.getCancerStudyStableId())); - assertTrue(accessControl.checkAccess(null, null, publicCancerStudy.getCancerStudyStableId())); - assertTrue(accessControl.checkAccess("blah", "blah", publicCancerStudy.getCancerStudyStableId())); - assertFalse(accessControl.checkAccess("", clearTextKey + "_NOT_KEY", - privateCancerStudy1.getCancerStudyStableId())); - - assertTrue(accessControl.checkAccess(user1.getEmail(), clearTextKey, - privateCancerStudy1.getCancerStudyStableId())); - assertTrue(accessControl.checkAccess(user2.getEmail(), clearTextKey, - privateCancerStudy2.getCancerStudyStableId())); - assertFalse(accessControl.checkAccess(user2.getEmail(), clearTextKey, - privateCancerStudy1.getCancerStudyStableId())); - assertFalse(accessControl.checkAccess(user1.getEmail(), clearTextKey, - privateCancerStudy2.getCancerStudyStableId())); - - // test accessControl.getCancerStudies - // just public studies - String studies = accessControl.getCancerStudies("no such email", clearTextKey + "_NOT_KEY"); - assertEquals("cancer_study_id\tname\tdescription\nstudy3\tpublic name\tdescription\n", studies); - - studies = accessControl.getCancerStudies(null, null); - assertEquals("cancer_study_id\tname\tdescription\nstudy3\tpublic name\tdescription\n", studies); - - // public and private studies - studies = accessControl.getCancerStudies(user1.getEmail(), clearTextKey); - assertEquals("cancer_study_id\tname\tdescription\n" + - "study1\tname\tdescription\nstudy3\tpublic name\tdescription\n", - studies); - - // no studies; delete the public one - DaoCancerStudy.deleteCancerStudy(publicCancerStudy.getInternalId()); - try { - studies = accessControl.getCancerStudies("no such email", clearTextKey); - fail("Should throw ProtocolException."); - } catch (ProtocolException e) { - assertEquals("No cancer studies accessible; either provide credentials to access private studies, " + - "or ask administrator to load public ones.\n", - e.getMsg()); - - } - */ - } - - private void setUpDBMS() throws DaoException, IOException { - /* - ResetDatabase.resetDatabase(); - - user1 = new User("artg@gmail.com", "Arthur", true); - DaoUser.addUser(user1); - user2 = new User("joe@gmail.com", "J", true); - DaoUser.addUser(user2); - - // load cancers - ImportTypesOfCancers.load(new File("/cancers.txt")); - - // make a couple of private studies (1 and 2) - privateCancerStudy1 = new CancerStudy("name", "description", "study1", "brca", false); - DaoCancerStudy.addCancerStudy(privateCancerStudy1); // 1 - privateCancerStudy2 = new CancerStudy("other name", "other description", "study2", "brca", false); - DaoCancerStudy.addCancerStudy(privateCancerStudy2); // 2 - - publicCancerStudy = new CancerStudy("public name", "description", "study3", "brca", true); - DaoCancerStudy.addCancerStudy(publicCancerStudy); // 3 - - clearTextKey = "aSecretKey"; - accessControl.createSecretKey(clearTextKey); - accessControl.createSecretKey("another Example key"); - */ - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestCancerStudyReader.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestCancerStudyReader.java deleted file mode 100644 index 2587aa8cea8..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestCancerStudyReader.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.File; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -/** - * JUnit test for CancerStudyReader class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestCancerStudyReader { - - @Test - public void testCancerStudyReaderCancerType() throws Exception { - - File file = new File("src/test/resources/cancer_study.txt"); - CancerStudy cancerStudy = CancerStudyReader.loadCancerStudy( file ); - - CancerStudy expectedCancerStudy = DaoCancerStudy.getCancerStudyByStableId( "test_brca" ); - assertEquals(expectedCancerStudy, cancerStudy); - // TBD: change this to use getResourceAsStream() - file = new File("src/test/resources/cancer_study_bad.txt"); - try { - cancerStudy = CancerStudyReader.loadCancerStudy( file ); - fail( "Should have thrown DaoException." ); - } catch (Exception e) { - assertEquals("brcaxxx is not a supported cancer type.", e.getMessage()); - } - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestCascadeSortOfMatrix.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestCascadeSortOfMatrix.java deleted file mode 100644 index 6c0928636eb..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestCascadeSortOfMatrix.java +++ /dev/null @@ -1,301 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import static org.junit.Assert.assertArrayEquals; - -import java.util.Comparator; -import java.util.Formatter; -import java.util.Locale; -import java.util.Random; - -import org.junit.Test; -import org.mskcc.cbio.portal.model.GeneticEvent; -import org.mskcc.cbio.portal.model.GeneticEventComparator; -import org.mskcc.cbio.portal.model.GeneticEventImpl; - -public class TestCascadeSortOfMatrix { - - // TODO: add a performance test with a 10000 x 10000 matrix - - @Test - public void testSortWithGeneticEvents() { - - GeneticEventComparator aGeneticEventComparator = new GeneticEventComparator( - GeneticEventComparator.defaultCNASortOrder(), - GeneticEventComparator.defaultMRNASortOrder(), - GeneticEventComparator.defaultRPPASortOrder(), - GeneticEventComparator.defaultMutationsSortOrder()); - - CascadeSortOfMatrix c = new CascadeSortOfMatrix( aGeneticEventComparator ); - - // make a matrix OF GeneticEventImpls - int rows = 3; - int cols = 4; - GeneticEvent[][] m= new GeneticEvent[rows][cols]; - for( int i=0; i { - - public int compare(Object o1, Object o2) { - return ( ((Integer)o1).compareTo( (Integer)o2 ) ); - } - - public boolean equals(Object obj) { - return (false); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestCategoryLabelReader.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestCategoryLabelReader.java deleted file mode 100644 index d91bf898d26..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestCategoryLabelReader.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.File; -import java.io.FileInputStream; -import java.io.IOException; -import java.util.Map; - -import static org.junit.Assert.*; - -public class TestCategoryLabelReader -{ - /** - * Tests the utility method of the CategoryLabelReader class. - * - * @throws java.io.IOException IO Error. - */ - public void testCategoryLabelReader() throws IOException - { - // TBD: change this to use getResourceAsStream() - File file = new File("target/test-classes/test_readable_categories.txt"); - FileInputStream fin = new FileInputStream (file); - - Map labelMap = CategoryLabelReader.readCategoryLabelMap(fin); - - // verify the size of the map - assertEquals(8, labelMap.size()); - - // verify some of the key,value pairs - - assertEquals (labelMap.get("TUMORSTAGE"), - "Tumor Stage"); - - assertEquals (labelMap.get("ProgressionFreeStatus"), - "Progression Free Status"); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestExtendedMutationUtil.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestExtendedMutationUtil.java deleted file mode 100644 index 95659e0b8a3..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestExtendedMutationUtil.java +++ /dev/null @@ -1,96 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.junit.runners.Parameterized; - -import java.util.Arrays; -import java.util.Collection; - -import static org.junit.Assert.assertEquals; - -/** - * Created by Hongxin Zhang on 3/20/18. - */ -@RunWith(Parameterized.class) -public class TestExtendedMutationUtil { - private String proteinChange; - private String proteinStart; - private String proteinEnd; - - public TestExtendedMutationUtil(String proteinChange, String proteinStart, String proteinEnd) { - this.proteinChange = proteinChange; - this.proteinStart = proteinStart; - this.proteinEnd = proteinEnd; - } - - @Parameterized.Parameters - public static Collection getParameters() { - return Arrays.asList( - new String[][]{ - // any - {"449_514mut", "449", "514"}, - - // Missense variant - {"V600E", "600", "600"}, - {"F53_Q53delinsL", "53", "53"}, - {"D842_I843delinsIM", "842", "843"}, - {"IK744KI", "744", "745"}, - - // feature_truncating variant - {"D286_L292trunc", "286", "292"}, - - // frameshift event - {"N457Mfs*22", "457", "457"}, - {"*1069Ffs*5", "1069", "1069"}, - - // inframe event - {"T417_D419delinsI", "417", "419"}, - {"E102_I103del", "102", "103"}, - {"V600delinsYM", "600", "600"}, - {"I744_K745delinsKIPVAI", "744", "745"}, - {"762_823ins", "762", "823"}, - {"V561_I562insER", "561", "562"}, - {"IK744KIPVAI", "744", "745"}, - {"IK744K", "744", "745"}, - {"IKG744KIPVAI", "744", "746"}, - {"P68_C77dup", "68", "77"}, - - // start_lost, - {"M1I", "1", "1"}, - {"M1?", "1", "1"}, - - // NA - {"BCR-ABL1 Fusion", "-1", "-1"}, - - // Splice - {"X405_splice", "405", "405"}, - {"405_splice", "405", "405"}, - {"405splice", "405", "405"}, - {"X405_A500splice", "405", "500"}, - {"X405_A500_splice", "405", "500"}, - {"405_500_splice", "405", "500"}, - {"405_500splice", "405", "500"}, - - // Stop gained - {"R2109*", "2109", "2109"}, - - // Synonymous Variant - {"G500G", "500", "500"}, - - }); - } - - @Test - public void getProteinPosStart() throws Exception { - int start = ExtendedMutationUtil.getProteinPosStart("", proteinChange); - assertEquals(proteinChange + ": Protein start should be " + proteinStart + ", but got: " + start, proteinStart, Integer.toString(start)); - } - - @Test - public void getProteinPosEnd() throws Exception { - int end = ExtendedMutationUtil.getProteinPosEnd("", proteinChange); - assertEquals(proteinChange + ": Protein end should be " + proteinEnd + ", but got: " + end, proteinEnd, Integer.toString(end)); - } - -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestGenePanelUtil.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestGenePanelUtil.java deleted file mode 100644 index 3dc43350dfc..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestGenePanelUtil.java +++ /dev/null @@ -1,249 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import java.util.Arrays; -import java.util.HashSet; -import java.util.Properties; -import java.util.Set; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNull; -import static org.mskcc.cbio.portal.util.GenePanelUtil.*; - - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = {"classpath:/applicationContext-dao.xml"}) -@Rollback -@Transactional -public class TestGenePanelUtil { - - CanonicalGene otor = makeGene(13321, 56914, "OTOR", makeAliases("FDP", "MIAL1")); - CanonicalGene cadm2 = makeGene(20001, 253559, "CADM2", makeAliases("IGSF4D", "Necl-3", "NECL3", "SynCAM 2", "synCAM2")); - CanonicalGene msh3 = makeGene(3573, 4437, "MSH3", makeAliases("MRP1", "DUP", "FAP4")); - CanonicalGene p2ry10 = makeGene(10455, 27334, "P2RY10", makeAliases("P2Y10", "LYPSR2")); - CanonicalGene adamts20 = makeGene(15009, 80070, "ADAMTS20", makeAliases("ADAM-TS20", "GON-1", "ADAMTS-20")); - CanonicalGene kat2a = makeGene(2154, 2648, "KAT2A", makeAliases("hGCN5", "GCN5", "GCN5L2", "PCAF-b")); - CanonicalGene myb = makeGene(3674, 4602, "MYB", makeAliases("c-myb_CDS", "Cmyb", "c-myb", "efg")); - CanonicalGene npipb15 = makeGene(24049, 440348, "NPIPB15", makeAliases("A-761H5.4", "NPIPL2")); - CanonicalGene dtnb = makeGene(1492, 1838, "DTNB", null); - CanonicalGene ablim1 = makeGene(3239, 3983, "ABLIM1", makeAliases("LIMAB1", "abLIM-1", "ABLIM", "LIMATIN")); - CanonicalGene piezo1 = makeGene(7609, 9780, "PIEZO1", makeAliases("FAM38A", "Mib", "LMPH3", "DHS")); - CanonicalGene fgfr3 = makeGene(1827, 2261, "FGFR3", makeAliases("JTK4", "HSFGFR3EX", "ACH", "CEK2", "CD333")); - - @Test - public void testExtractPropertyValueStableId() { - Properties p1 = new Properties(); - p1.setProperty("stable_id", "TESTPANEL1"); - String actual = extractPropertyValue("stable_id", p1, true); - String expected = "TESTPANEL1"; - assertEquals(expected, actual); - } - - @Test - public void testExtractPropertyValueDescription() { - Properties p1 = new Properties(); - p1.setProperty("description", "Example gene panel meta file for testing purposes."); - String actual = extractPropertyValue("description", p1, false); - String expected = "Example gene panel meta file for testing purposes."; - assertEquals(expected, actual); - } - - @Test - public void testExtractPropertyValueGeneList() { - Properties p1 = new Properties(); - p1.setProperty("gene_list", "ABLIM1\tADAMTS20\tCADM2\tDTNB\tKAT2A\tMSH3\tMYB\tNPIPB15\tOTOR\tP2RY10"); - String actual = extractPropertyValue("gene_list", p1, true); - String expected = "ABLIM1\tADAMTS20\tCADM2\tDTNB\tKAT2A\tMSH3\tMYB\tNPIPB15\tOTOR\tP2RY10"; - assertEquals(expected, actual); - } - - @Test(expected = NullPointerException.class) - public void testExtractPropertyValueUnknownPropertyName() { - Properties p1 = new Properties(); - extractPropertyValue("stable_id", p1, true); - } - - @Test(expected = IllegalArgumentException.class) - public void testExtractPropertyValueNoPropertyValue() { - Properties p1 = new Properties(); - p1.setProperty("stable_id", ""); - extractPropertyValue("stable_id", p1, true); - } - - @Test(expected = IllegalArgumentException.class) - public void testExtractPropertyValueNoSpaceAllowed() { - Properties p1 = new Properties(); - p1.setProperty("description", "Example gene panel meta file for testing purposes."); - extractPropertyValue("description", p1, true); - } - - @Test - public void testExtractGenesAllowEmptyGenePanel() { - Properties p = new Properties(); - p.setProperty("gene_list", ""); - Set expected = makeGeneSet(); - Set actual = extractGenes(p, true); - assertEquals(expected, actual); - } - - @Test(expected = IllegalArgumentException.class) - public void testExtractGenesDisallowEmptyGenePanel() { - Properties p = new Properties(); - p.setProperty("gene_list", ""); - extractGenes(p, false); - } - - @Test - public void testExtractGenesMissingTab() { - Properties p1 = new Properties(); - p1.setProperty("gene_list", "ABLIM1 ADAMTS20\tCADM2\tDTNB\tKAT2A\tMSH3\tMYB\tNPIPB15\tOTOR\tP2RY10"); - Set actual = extractGenes(p1, false); - assertNull(actual); - } - - @Test - public void testExtractGenesNonEmptyGenePanel() { - Properties p1 = new Properties(); - p1.setProperty("gene_list", "ABLIM1\tADAMTS20\tCADM2\tDTNB\tKAT2A\tMSH3\tMYB\tNPIPB15\tOTOR\tP2RY10"); - Set expected = makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1); - Set actual = extractGenes(p1, false); - assertEquals(expected, actual); - } - - @Test - public void testExtractGenesAliasedGenes() { - Properties p1 = new Properties(); - p1.setProperty("gene_list", "LIMAB1\tGON-1\tSynCAM 2\tDTNB\tPCAF-b\tDUP\tc-myb\tA-761H5.4\tMIAL1\tLYPSR2"); - Set expected = makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1); - Set actual = extractGenes(p1, false); - assertEquals(expected, actual); - } - - @Test - public void testExtractGenesUnknownParseableLong() { - String NOT_A_GENE = "111111111111"; - Properties p1 = new Properties(); - p1.setProperty("gene_list", NOT_A_GENE + "\tADAMTS20\tCADM2\tDTNB\tKAT2A\tMSH3\tMYB\tNPIPB15\tOTOR\tP2RY10"); - Set actual = extractGenes(p1, false); - assertNull(actual); - } - - @Test - public void testExtractGenesUnknownUnparseableLong() { - String NOT_A_GENE = "HELLOWORLD!"; - Properties p1 = new Properties(); - p1.setProperty("gene_list", NOT_A_GENE + "\tADAMTS20\tCADM2\tDTNB\tKAT2A\tMSH3\tMYB\tNPIPB15\tOTOR\tP2RY10"); - Set actual = extractGenes(p1, false); - assertNull(actual); - } - - @Test - public void testGetAddRemoveAEqualsB() { - Pair expected = new Pair( - makeGeneSet(), - makeGeneSet() - ); - Pair actual = getAddRemove( - makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1), - makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1) - ); - assertEquals(expected, actual); - } - - @Test - public void testGetAddRemoveEmptyIntersection() { - Pair expected = new Pair( - makeGeneSet(adamts20, ablim1), - makeGeneSet(piezo1, fgfr3)); - Pair actual = getAddRemove( - makeGeneSet(adamts20, ablim1), - makeGeneSet(piezo1, fgfr3)); - assertEquals(expected, actual); - } - - @Test - public void testGetAddRemoveAOrBEmpty() { - Pair expected = new Pair( - makeGeneSet(), - makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1) - ); - Pair actual = getAddRemove( - makeGeneSet(), - makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1) - ); - assertEquals(expected, actual); - } - - @Test - public void testGetAddRemoveIntersectAndOnlyAdd() { - Pair expected = new Pair( - makeGeneSet(otor, cadm2, msh3, p2ry10, kat2a, myb, npipb15, dtnb), - makeGeneSet() - ); - Pair actual = getAddRemove( - makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1), - makeGeneSet(adamts20, ablim1) - ); - assertEquals(expected, actual); - } - - @Test - public void testGetAddRemoveIntersectAndOnlyRemove() { - Pair expected = new Pair( - makeGeneSet(), - makeGeneSet(otor, cadm2, msh3, p2ry10, kat2a, myb, npipb15, dtnb) - ); - Pair actual = getAddRemove( - makeGeneSet(adamts20, ablim1), - makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1) - ); - assertEquals(expected, actual); - } - - @Test - public void testGetAddRemoveIntersectAndAndRemove() { - Pair expected = new Pair( - makeGeneSet(adamts20, ablim1), - makeGeneSet(piezo1, fgfr3) - ); - Pair actual = getAddRemove( - makeGeneSet(otor, cadm2, msh3, p2ry10, adamts20, kat2a, myb, npipb15, dtnb, ablim1), - makeGeneSet(otor, cadm2, piezo1, msh3, fgfr3, p2ry10, kat2a, myb, npipb15, dtnb) - ); - assertEquals(expected, actual); - } - - @Test - public void testPair() { - Pair expected = new Pair( - makeGeneSet(ablim1, adamts20, fgfr3, piezo1), - makeGeneSet() - ); - Pair actual = new Pair( - makeGeneSet(ablim1, fgfr3, adamts20, piezo1), - makeGeneSet() - ); - assertEquals(expected, actual); - } - - private HashSet makeAliases(String... aliases) { - return new HashSet<>(Arrays.asList(aliases)); - } - - private HashSet makeGeneSet(CanonicalGene... genes) { - return new HashSet<>(Arrays.asList(genes)); - } - - private CanonicalGene makeGene(int geneticEntityId, long entrezGeneId, String hugoGeneSymbol, Set aliases) { - CanonicalGene gene = new CanonicalGene(geneticEntityId, entrezGeneId, hugoGeneSymbol, aliases); - gene.setType("protein-coding"); - return gene; - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestGeneSetReader.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestGeneSetReader.java deleted file mode 100644 index 6b84a810118..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestGeneSetReader.java +++ /dev/null @@ -1,72 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - - -import org.mskcc.cbio.portal.model.SetOfGenes; - -import java.io.File; -import java.io.IOException; -import java.io.FileInputStream; -import java.util.ArrayList; - -import static org.junit.Assert.*; - -/** - * JUnit test for the Gene Set Reader. - */ -public class TestGeneSetReader { - - /** - * Tests the Gene Set Reader Class. - * - * @throws java.io.IOException IO Error. - */ - public void testGeneSetReader() throws IOException { - // TBD: change this to use getResourceAsStream() - File file = new File("target/test-classes/gene_sets.txt"); - FileInputStream fin = new FileInputStream (file); - - ArrayList geneSetList = GeneSetReader.readGeneSets(fin); - assertEquals (23, geneSetList.size()); - - // Verify that the correct # of genes are inserted - assertEquals ("Prostate Cancer: AR Signaling (10 genes)", - geneSetList.get(1).getName()); - assertEquals ("Prostate Cancer: AR and steroid synthesis enzymes (30 genes)", - geneSetList.get(2).getName()); - - assertEquals ("SOX9 RAN TNK2 EP300 PXN NCOA2 AR NRIP1 NCOR1 NCOR2", - geneSetList.get(1).getGeneList()); - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestGeneticProfileReader.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestGeneticProfileReader.java deleted file mode 100644 index fbae1cdbfcc..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestGeneticProfileReader.java +++ /dev/null @@ -1,97 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.File; -import java.io.IOException; -import java.util.ArrayList; - -/** - * JUnit test for GeneticProfileReader class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestGeneticProfileReader { - - @Test - public void testGeneticProfileReader() throws Exception { - // load cancers - // TBD: change this to use getResourceAsStream() - // TBD: change this to use getResourceAsStream() - - File file = new File("target/test-classes/genetic_profile_test.txt"); - GeneticProfile geneticProfile = GeneticProfileReader.loadGeneticProfile(file); - assertEquals("Barry", geneticProfile.getTargetLine()); - assertEquals("Blah Blah.", geneticProfile.getProfileDescription()); - - CancerStudy cancerStudy = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub"); - ArrayList list = DaoGeneticProfile.getAllGeneticProfiles - (cancerStudy.getInternalId()); - geneticProfile = list.get(0); - - assertEquals(cancerStudy.getInternalId(), geneticProfile.getCancerStudyId()); - assertEquals("Putative copy-number alterations from GISTIC", geneticProfile.getProfileName()); - assertEquals(GeneticAlterationType.COPY_NUMBER_ALTERATION, - geneticProfile.getGeneticAlterationType()); - } - - @Test(expected = RuntimeException.class) - public void testTreatmentResponseMissingPivotField() throws IOException, DaoException { - File file = new File("target/test-classes/test_meta_treatment_missing_pivot.txt"); - GeneticProfileReader.loadGeneticProfile(file); - } - - @Test(expected = RuntimeException.class) - public void testTreatmentResponseMissingSortOrderField() throws IOException, DaoException { - File file = new File("target/test-classes/test_meta_treatment_missing_sortorder.txt"); - GeneticProfileReader.loadGeneticProfile(file); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestGisticReader.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestGisticReader.java deleted file mode 100644 index c99b7232e92..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestGisticReader.java +++ /dev/null @@ -1,79 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.IOException; - -import org.junit.Test; -import org.mskcc.cbio.portal.dao.DaoException; - -public class TestGisticReader { - - @Test - public void testGisticReader() throws DaoException, IOException, Exception { -// File metadata = new File(".//testCancerStudy.txt"); -// File gisticFile = new File("/test-gistic-amp.txt"); -// File gisticTable_file = new File("/test-gistic-table-amp.txt"); -// Gistic dummyGistic = new Gistic(); -// -// GisticReader reader = new GisticReader(); -// -// ArrayList table_reads = reader.parse_Table(gisticTable_file); -// ArrayList nontable_reads = reader.parse_NonTabular(gisticFile); -// assertTrue(reader.parseAmpDel(gisticTable_file) == Gistic.AMPLIFIED); -// assertTrue(reader.parseAmpDel(gisticFile) == Gistic.AMPLIFIED); -// -// // mergeGistic -// CanonicalGene madeup_gene1 = new CanonicalGene(1l, "DIO2"); -// CanonicalGene madeup_gene2 = new CanonicalGene(2l, "NIKI"); -// -// ArrayList testgenes; -// testgenes = new ArrayList(); -// testgenes.add(madeup_gene1); -// testgenes.add(madeup_gene2); -// -// Gistic testgistic1 = new Gistic(1, -1, 1, 2, 0.05d, 0.05d, testgenes, Gistic.AMPLIFIED); -// Gistic testgistic2 = new Gistic(1, 1, -1, 2, 0.05d, 0.05d, testgenes, Gistic.AMPLIFIED); -// -// testgistic1 = reader.mergeGistics(testgistic1, testgistic2); -// assertTrue(testgistic1.getChromosome() == 1); -// -// // database test -// DaoGistic.addGistic(testgistic1); -// DaoGistic.getGisticByROI(testgistic1.getChromosome(), testgistic1.getPeakStart(), testgistic2.getPeakEnd()); -// DaoGistic.deleteGistic(testgistic1.getInternalId()); -// -// -// ArrayList merged = reader.mergeGisticLists(table_reads, nontable_reads, Gistic.AMPLIFIED); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestGlobalProperties.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestGlobalProperties.java deleted file mode 100644 index 0c5e3dd7098..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestGlobalProperties.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import static org.junit.Assert.*; - -import java.util.ArrayList; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoUser; -import org.mskcc.cbio.portal.model.User; -import java.io.*; -import java.util.*; -import static org.junit.Assert.*; -import static org.hamcrest.CoreMatchers.*; - -/** - * JUnit test for DaoUser class. - */ - -public class TestGlobalProperties { - public final String DB_VERSION = "db.version"; - public final String PROPERTIES_FILENAME = "maven.properties"; - - @Test - public void testVersionsMatch() throws Exception { - InputStream is = TestGlobalProperties.class.getClassLoader().getResourceAsStream(PROPERTIES_FILENAME); - Properties properties = loadProperties(is); - assertNotNull(properties.getProperty(DB_VERSION)); - - } - - private static Properties loadProperties(InputStream is) { - Properties properties = new Properties(); - try { - properties.load(is); - is.close(); - } - catch (IOException e) {} - return properties; - - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestMafUtil.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestMafUtil.java deleted file mode 100644 index b7ef75e0e80..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestMafUtil.java +++ /dev/null @@ -1,286 +0,0 @@ -/* - * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.BufferedReader; -import java.io.FileReader; -import java.io.IOException; -import org.mskcc.cbio.portal.model.ExtendedMutation; -import org.mskcc.cbio.portal.model.ExtendedMutation.MutationEvent; - -import java.util.*; -import java.util.regex.Matcher; -import org.junit.Assert; -import org.junit.Test; -import org.mskcc.cbio.maf.MafRecord; -import org.mskcc.cbio.maf.MafUtil; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.model.AlleleSpecificCopyNumber; -import org.mskcc.cbio.portal.model.GeneticProfile; - -/** - * - * @author ochoaa - */ -public class TestMafUtil { - private final String ASCN_NAMESPACE = "ascn"; - private final Set VALID_NAMESPACES = new LinkedHashSet<>(Arrays.asList("namespace1", "namespace2")); - private final String INVALID_NAMESPACE = "invalid_namespace"; - - @Test - public void testResolveTumorSeqAllele() { - StringBuilder errorMessage = new StringBuilder(); - errorMessage.append("Error messages:"); - - int failCount = 0; - for (ExtendedMutation record : makeMockExtendedMutationRecords()) { - String resolvedAllele = MafUtil.resolveTumorSeqAllele(record.getReferenceAllele(), - record.getTumorSeqAllele1(), record.getTumorSeqAllele2()); - if (!resolvedAllele.equals(record.getTumorSeqAllele())) { - failCount++; - errorMessage.append("\n\tResolved tumor seq allele does not match expected value: ") - .append(resolvedAllele).append(" != ").append(record.getTumorSeqAllele()); - } - } - if (failCount > 0) { - Assert.fail(errorMessage.toString()); - } - } - - /** - * Returns mock data for testing MafUtil.resolveTumorSeqAllele(...). - * referenceAllele, tumorSeqAllele1, tumorSeqAllele2 = input data - * tumorSeqAllele = the expected allele to be resolved given a reference allele, - * tumor seq allele 1, and tumor seq allele 2 - * @return - */ - private List makeMockExtendedMutationRecords() { - List records = new ArrayList<>(); - String referenceAllele; String tumorSeqAllele; - String tumorSeqAllele1; String tumorSeqAllele2; - - ExtendedMutation mut = new ExtendedMutation(); - MutationEvent me = new MutationEvent(); - - // mock del variant - referenceAllele = "AACG"; tumorSeqAllele = "-"; - tumorSeqAllele1 = "AACG"; tumorSeqAllele2 = "-"; - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "AACG"; tumorSeqAllele = "-"; - tumorSeqAllele1 = "-"; tumorSeqAllele2 = "AACG"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - // mock insertion variants - referenceAllele = "-"; tumorSeqAllele = "ATGC"; - tumorSeqAllele1 = "ATGC"; tumorSeqAllele2 = "-"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "-"; tumorSeqAllele = "ATGC"; - tumorSeqAllele1 = "-"; tumorSeqAllele2 = "ATGC"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "-"; tumorSeqAllele = "C"; - tumorSeqAllele1 = "C"; tumorSeqAllele2 = "A"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - // mock indel variants - referenceAllele = "AACG"; tumorSeqAllele = "ATGC"; - tumorSeqAllele1 = "ATGC"; tumorSeqAllele2 = "TGCA"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "AAGA"; tumorSeqAllele = "CA"; - tumorSeqAllele1 = "-"; tumorSeqAllele2 = "CA"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - // mock cases where snps preferred over dels - referenceAllele = "A"; tumorSeqAllele = "T"; - tumorSeqAllele1 = "T"; tumorSeqAllele2 = "C"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "A"; tumorSeqAllele = "C"; - tumorSeqAllele1 = "A"; tumorSeqAllele2 = "C"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "A"; tumorSeqAllele = "C"; - tumorSeqAllele1 = "-"; tumorSeqAllele2 = "C"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "A"; tumorSeqAllele = "C"; - tumorSeqAllele1 = "C"; tumorSeqAllele2 = "-"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - // test null cases - referenceAllele = "G"; tumorSeqAllele = "-"; - tumorSeqAllele1 = null; tumorSeqAllele2 = "-"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - referenceAllele = "G"; tumorSeqAllele = "A"; - tumorSeqAllele1 = "NA"; tumorSeqAllele2 = "A"; - mut = new ExtendedMutation(); me = new MutationEvent(); - me.setReferenceAllele(referenceAllele); - me.setTumorSeqAllele(tumorSeqAllele); - mut.setTumorSeqAllele1(tumorSeqAllele1); - mut.setTumorSeqAllele2(tumorSeqAllele2); - mut.setEvent(me); - records.add(mut); - - return records; - } - - /** - * Test that expected namespaces are resolved correctly from MAF header. - * @throws Exception - */ - @Test - public void testResolveAnnotationNamespaces() throws Exception { - - FileReader reader = new FileReader("src/test/resources/data_mutations_extended_json_annotation.txt"); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine().trim(); - while (line.startsWith("#")) { - line = buf.readLine().trim(); - } - MafUtil mafUtil = new MafUtil(line, VALID_NAMESPACES); - Assert.assertEquals(2, mafUtil.getNamespaceIndexMap().size()); - for (String ns : VALID_NAMESPACES) { - if (!mafUtil.getNamespaceIndexMap().containsKey(ns)) { - Assert.fail("maUtil.getNamespaceIndexMap() is missing expected namespace: '" + ns + "'"); - } - } - Assert.assertFalse("Invalid namespace found in mafUtil.getNamespaceIndexMap(): " + INVALID_NAMESPACE, mafUtil.getNamespaceIndexMap().containsKey(INVALID_NAMESPACE)); - buf.close(); - } - - /** - * Test that ASCN namespace is resolved correctly from MAF. - * @throws Exception - */ - @Test - public void testResolveAscnAnnotationNamespace() throws Exception { - - FileReader reader = new FileReader("src/test/resources/data_mutations_extended_json_annotation.txt"); - BufferedReader buf = new BufferedReader(reader); - String line = buf.readLine().trim(); - while (line.startsWith("#")) { - line = buf.readLine().trim(); - } - MafUtil mafUtil = new MafUtil(line, new LinkedHashSet<>(Arrays.asList(ASCN_NAMESPACE))); - Assert.assertEquals(1, mafUtil.getNamespaceIndexMap().size()); - Assert.assertTrue(mafUtil.getNamespaceIndexMap().containsKey(ASCN_NAMESPACE)); - - List ascnRecords = new ArrayList<>(); - while((line=buf.readLine()) != null) { - if (!line.startsWith("#") && line.trim().length() > 0) { - MafRecord record = mafUtil.parseRecord(line); - // every record in test MAF should have ASCN data - Assert.assertTrue(record.getNamespacesMap().containsKey(ASCN_NAMESPACE)); - Map ascnData = record.getNamespacesMap().get(ASCN_NAMESPACE); - ascnRecords.add(new AlleleSpecificCopyNumber(ascnData)); - } - } - buf.close(); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestMutSigReader.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestMutSigReader.java deleted file mode 100644 index 4a6fff34784..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestMutSigReader.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.File; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestMutSigReader { - - // TBD: change these to use getResourceAsStream() - File properties = new File("target/test-classes/testCancerStudy.txt"); - File mutSigFile = new File("target/test-classes/test_mut_sig_data.txt"); - - int studyId; - - @Before - public void setUp() throws DaoException - { - studyId = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub").getInternalId(); - DaoGeneticProfile.reCache(); - } - - @Test - public void testloadMutSig() throws Exception { - - ProgressMonitor.setConsoleMode(false); - - MutSigReader.loadMutSig(studyId, mutSigFile); - - // Is the data in the database? - MutSig mutSig = DaoMutSig.getMutSig("AKT1", studyId); - assertTrue(mutSig != null); - CanonicalGene testGene = mutSig.getCanonicalGene(); - assertTrue(testGene != null); - - assertTrue("AKT1".equals(testGene.getHugoGeneSymbolAllCaps())); - assertEquals(mutSig.getNumMutations(), 5); - assertEquals(mutSig.getNumBasesCovered(), 150306); - assertTrue(Math.abs(mutSig.getpValue() - 1.82E-7) < 1E-12); - assertTrue(Math.abs(mutSig.getqValue() - 2.7E-5) < 1E-12); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestMutationCounter.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestMutationCounter.java deleted file mode 100644 index 4922c33024a..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestMutationCounter.java +++ /dev/null @@ -1,150 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.ExtendedMutation; -import org.mskcc.cbio.portal.model.ExtendedMutationMap; - -import java.util.ArrayList; - -import static org.junit.Assert.*; - -/** - * Tests the Mutation Counder Class. - * - * @author Ethan Cerami. - */ -public class TestMutationCounter { - private static final String BRCA1 = "BRCA1"; - private static final String BRCA2 = "BRCA2"; - private static final int CASE_A = 1; - private static final int CASE_B = 2; - private static final int CASE_C = 3; - private static final int CASE_D = 4; - - public void test1() { - CanonicalGene brca1 = new CanonicalGene(672, BRCA1); - CanonicalGene brca2 = new CanonicalGene(675, BRCA2); - - // By default, all these mutations are somatic - ExtendedMutation mutation1 = createMutation1(brca1, CASE_A); - ExtendedMutation mutation2 = createMutation1(brca1, CASE_A); - ExtendedMutation mutation3 = createMutation1(brca2, CASE_A); - - ArrayList mutationList = - createMutationList(mutation1, mutation2, mutation3); - - ArrayList sampleList = new ArrayList(); - sampleList.add(CASE_A); - sampleList.add(CASE_B); - - ExtendedMutationMap mutationMap = new ExtendedMutationMap(mutationList, sampleList); - MutationCounter mutationCounter = new MutationCounter (BRCA1, mutationMap); - assertEquals (0.5, mutationCounter.getMutationRate(), 0.01); - assertEquals (0.5, mutationCounter.getSomaticMutationRate(), 0.01); - assertEquals (0.0, mutationCounter.getGermlineMutationRate(), 0.01); - - assertEquals ("[Somatic Mutation Rate: 50%]", mutationCounter.getTextSummary()); - } - - public void test2() { - CanonicalGene brca1 = new CanonicalGene(672, BRCA1); - CanonicalGene brca2 = new CanonicalGene(675, BRCA2); - - // Case A will contain a germline and somatic mutation - ExtendedMutation mutation1 = createMutation1(brca1, CASE_A); - mutation1.setMutationStatus("germline"); - ExtendedMutation mutation2 = createMutation1(brca1, CASE_A); - ExtendedMutation mutation3 = createMutation1(brca2, CASE_A); - - ArrayList mutationList = - createMutationList(mutation1, mutation2, mutation3); - - ArrayList sampleList = new ArrayList(); - sampleList.add(CASE_A); - sampleList.add(CASE_B); - - ExtendedMutationMap mutationMap = new ExtendedMutationMap(mutationList, sampleList); - MutationCounter mutationCounter = new MutationCounter (BRCA1, mutationMap); - assertEquals (0.5, mutationCounter.getMutationRate(), 0.01); - assertEquals (0.5, mutationCounter.getSomaticMutationRate(), 0.01); - assertEquals (0.5, mutationCounter.getGermlineMutationRate(), 0.01); - assertEquals ("[Germline Mutation Rate: 50%, Somatic Mutation Rate: 50%]", - mutationCounter.getTextSummary()); - } - - public void test3() { - CanonicalGene brca1 = new CanonicalGene(672, BRCA1); - CanonicalGene brca2 = new CanonicalGene(675, BRCA2); - - // By default, all these mutations are somatic - ExtendedMutation mutation1 = createMutation1(brca1, CASE_A); - ExtendedMutation mutation2 = createMutation1(brca1, CASE_A); - ExtendedMutation mutation3 = createMutation1(brca2, CASE_A); - - ArrayList mutationList = - createMutationList(mutation1, mutation2, mutation3); - - ArrayList sampleList = new ArrayList(); - sampleList.add(CASE_A); - sampleList.add(CASE_B); - sampleList.add(CASE_C); - sampleList.add(CASE_D); - - ExtendedMutationMap mutationMap = new ExtendedMutationMap(mutationList, sampleList); - MutationCounter mutationCounter = new MutationCounter (BRCA1, mutationMap); - assertEquals (0.25, mutationCounter.getMutationRate(), 0.01); - assertEquals (0.25, mutationCounter.getSomaticMutationRate(), 0.01); - assertEquals (0.0, mutationCounter.getGermlineMutationRate(), 0.01); - assertEquals ("[Somatic Mutation Rate: 25%]", mutationCounter.getTextSummary()); - } - - private ArrayList createMutationList(ExtendedMutation - mutation1, ExtendedMutation mutation2, ExtendedMutation mutation3) { - ArrayList mutationList = new ArrayList(); - mutationList.add(mutation1); - mutationList.add(mutation2); - mutationList.add(mutation3); - return mutationList; - } - - private ExtendedMutation createMutation1(CanonicalGene - gene, Integer sampleId) { - ExtendedMutation mutation2 = new ExtendedMutation(); - mutation2.setGene(gene); - mutation2.setSampleId(sampleId); - mutation2.setProteinChange("C22G"); - return mutation2; - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestMutationKeywordUtils.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestMutationKeywordUtils.java deleted file mode 100644 index 46bf22e5557..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestMutationKeywordUtils.java +++ /dev/null @@ -1,215 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNull; - -import org.junit.Test; - - -/** - * - * @author jgao - */ -public class TestMutationKeywordUtils { - - @Test - public void testGuessOncotatorKeyword() throws Exception { - // missense - assertEquals("K13 missense", MutationKeywordUtils.guessOncotatorMutationKeyword("K13R", "Missense_Mutation")); - assertEquals("M19 missense", MutationKeywordUtils.guessOncotatorMutationKeyword("M19K", "Missense_Mutation")); - assertEquals("569-570 missense", MutationKeywordUtils.guessOncotatorMutationKeyword("569_570HG>QW", "Missense_Mutation")); - - // ins - assertEquals("425 insertion", MutationKeywordUtils.guessOncotatorMutationKeyword("425_426insC", "In_Frame_Ins")); - assertEquals("77 insertion", MutationKeywordUtils.guessOncotatorMutationKeyword("77_77T>NP", "In_Frame_Ins")); - assertEquals("1583 insertion", MutationKeywordUtils.guessOncotatorMutationKeyword("E1583_Q1584insPVELMPPE", "NA")); - assertEquals("1720 insertion", MutationKeywordUtils.guessOncotatorMutationKeyword("A1720_V1721ins14", "NA")); - assertEquals("600 insertion", MutationKeywordUtils.guessOncotatorMutationKeyword("D600_L601ins10", "NA")); - - // del - assertEquals("359-359 deletion", MutationKeywordUtils.guessOncotatorMutationKeyword("E359del", "In_Frame_Del")); - assertEquals("517-521 deletion", MutationKeywordUtils.guessOncotatorMutationKeyword("517_521ESSTR>G", "In_Frame_Del")); - assertEquals("274-341 deletion", MutationKeywordUtils.guessOncotatorMutationKeyword("W274_F341del", "NA")); - assertEquals("188-191 deletion", MutationKeywordUtils.guessOncotatorMutationKeyword("L188_P191delLAPP", "NA")); - assertEquals("485-490 deletion", MutationKeywordUtils.guessOncotatorMutationKeyword("L485_P490>Y", "NA")); - - // nonsense - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("S371*", "Nonsense_Mutation")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("2219_2220insVR**", "In_Frame_Ins")); - - // nonstart - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("M1I", "Missense_Mutation")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("1_1M>IA", "In_Frame_Ins")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("1_2insL", "In_Frame_Ins")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("M1del", "In_Frame_Del")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("MPEEMD1del", "In_Frame_Del")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("1_15MPPKVTSELLRQLRQ>K", "In_Frame_Del")); - - // nonstop - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("*128Q", "Nonstop_Mutation")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("473_477TVAS*>R", "In_Frame_Del")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("904_905SE>*", "In_Frame_Del")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("G165_*404del", "NA")); - - // fs - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("M253fs", "Frame_Shift_Ins")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("Y122fs", "Frame_Shift_Del")); - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("S2751fs*27", "NA")); - - // sp - assertEquals("truncating", MutationKeywordUtils.guessOncotatorMutationKeyword("R31_splice", "Splice_Site")); - - // others - assertEquals("Exon skipping", MutationKeywordUtils.guessOncotatorMutationKeyword("Exon skipping", "Exon skipping")); - assertEquals("vIII deletion", MutationKeywordUtils.guessOncotatorMutationKeyword("vIII deletion", "vIII deletion")); - } - - @Test - public void testGuessCosmicKeyword() throws Exception { - assertNull(MutationKeywordUtils.guessCosmicKeyword("")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("0")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("?")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("*730?")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("(=)")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("P248?")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("K267_D268ins?")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("WQQQSYLD25?")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("M1>?")); - assertNull(MutationKeywordUtils.guessCosmicKeyword("PCRF*177delext*4")); //delext deletion should be Null - - - // silent - assertEquals("*803 silent", MutationKeywordUtils.guessCosmicKeyword("*803*")); - assertEquals("A803 silent", MutationKeywordUtils.guessCosmicKeyword("A803A")); - assertEquals("A803 silent", MutationKeywordUtils.guessCosmicKeyword("A803>A")); - assertEquals("A803 silent", MutationKeywordUtils.guessCosmicKeyword("A803=")); - assertEquals("A803 silent", MutationKeywordUtils.guessCosmicKeyword("A803%3D")); - - // missense - assertEquals("A2 missense", MutationKeywordUtils.guessCosmicKeyword("A2S")); - assertEquals("M19 missense", MutationKeywordUtils.guessCosmicKeyword("M19K")); - assertEquals("475-477 missense", MutationKeywordUtils.guessCosmicKeyword("Q475_E477>VLQ")); - - // insertion - assertEquals("1069 insertion", MutationKeywordUtils.guessCosmicKeyword("*1069_*1069insWKDN*")); - assertEquals("574 insertion", MutationKeywordUtils.guessCosmicKeyword("T574_Q575ins12")); - assertEquals("1593 insertion", MutationKeywordUtils.guessCosmicKeyword("L1593_R1594ins12")); - assertEquals("1592 insertion", MutationKeywordUtils.guessCosmicKeyword("F1592>LGP")); - assertEquals("6 insertion", MutationKeywordUtils.guessCosmicKeyword("C6>SG")); - assertEquals("630 insertion", MutationKeywordUtils.guessCosmicKeyword("D630_I631insRG")); - assertEquals("299 insertion", MutationKeywordUtils.guessCosmicKeyword("299_300insGRS")); - assertEquals("976 insertion", MutationKeywordUtils.guessCosmicKeyword("V976_C977ins3")); - assertEquals("172 insertion", MutationKeywordUtils.guessCosmicKeyword("D172_*173insCTSTDGS")); - assertEquals("452 insertion", MutationKeywordUtils.guessCosmicKeyword("Y452_Q455>SGGSRIK")); // this is actually missense? - assertEquals("475 insertion", MutationKeywordUtils.guessCosmicKeyword("Q475_E476>VLQ")); // this is actually missense? - - // extension (treated as insertion) - assertEquals("1001 insertion", MutationKeywordUtils.guessCosmicKeyword("*1001Rext*22")); - - // duplication (treated as insertion) - assertEquals("100 insertion", MutationKeywordUtils.guessCosmicKeyword("A100dup")); - assertEquals("102 insertion", MutationKeywordUtils.guessCosmicKeyword("A102_A104dup")); - - // delins (treated as insertion/missense/deletion) - assertEquals("1038-1041 deletion", MutationKeywordUtils.guessCosmicKeyword("A1038_R1041delinsCFC")); - assertEquals("102-104 deletion", MutationKeywordUtils.guessCosmicKeyword("A102_L104delinsV")); - assertEquals("106 insertion", MutationKeywordUtils.guessCosmicKeyword("A106delinsGRLS")); - assertEquals("106 insertion", MutationKeywordUtils.guessCosmicKeyword("A106_A107delinsGRLS")); - assertEquals("107-108 missense", MutationKeywordUtils.guessCosmicKeyword("A107_L108delinsSD")); - - - // delext (treated as insertion/missense), logically it should only be insertion - assertEquals("125 insertion", MutationKeywordUtils.guessCosmicKeyword("*125delext*8")); - assertEquals("177 insertion", MutationKeywordUtils.guessCosmicKeyword("PCRF*177delext*64")); - assertEquals("177-181 missense", MutationKeywordUtils.guessCosmicKeyword("PCRF*177delext*5")); - - - // deletion - assertEquals("738-738 deletion", MutationKeywordUtils.guessCosmicKeyword("G738delG")); - assertEquals("400-400 deletion", MutationKeywordUtils.guessCosmicKeyword("K400del")); - assertEquals("146-148 deletion", MutationKeywordUtils.guessCosmicKeyword("L146_D148delLRD")); - assertEquals("418-419 deletion", MutationKeywordUtils.guessCosmicKeyword("Y418_D419del")); - assertEquals("449-459 deletion", MutationKeywordUtils.guessCosmicKeyword("L449_K459del11")); - assertEquals("454-455 deletion", MutationKeywordUtils.guessCosmicKeyword("T454_Q455>Q")); // actually only one Q got deleted - assertEquals("456-461 deletion", MutationKeywordUtils.guessCosmicKeyword("F456_R461>S")); // this is actually missense? - assertEquals("459-460 deletion", MutationKeywordUtils.guessCosmicKeyword("K459_S460>N")); // GENE=PIK3R1;STRAND=+;CDS=c.1377_1379delAAG;AA=p.K459_S460>N;CNT=1 - - // frameshift - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("D160fs*47")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("R228fs>25")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("G297fs*>3")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("A254fs")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("(2287)fs")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("N342fs?")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("*139fs?")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("(R91)fs")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("215fs")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("(E55)fs*?")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("L617fs*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("*1069fs*3")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("*257fs*>4")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("557fs*?")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("?fs")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("*100Ifs*4")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("R412_*413delR*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("(P1249)fs*?")); - - // non sense - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("Q341*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("P198>*")); - - // delete * - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("*707del*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("S663_*665delSY*")); - - // insert * - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("Q1365>H*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("Y16_Q17>*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("K664_K665>N*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("Y74_Y75ins*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("Q1365>H*")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("D65_E67>***")); - - // non start - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("M1T")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("M1delM")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("M1_A2>IP")); - - // non stop - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("*90Y")); - assertEquals("truncating", MutationKeywordUtils.guessCosmicKeyword("T473_*477>R")); - - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestNaturalOrderComparator.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestNaturalOrderComparator.java deleted file mode 100644 index 4dbeb170d2d..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestNaturalOrderComparator.java +++ /dev/null @@ -1,34 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package org.mskcc.cbio.portal.util; - -import java.util.Arrays; -import java.util.Collections; -import java.util.List; -import static org.junit.Assert.assertEquals; - -import org.junit.Test; - -/** - * - * @author debruiji - */ -public class TestNaturalOrderComparator { - @Test - public void testGuessOncotatorKeyword() throws Exception { - String[] strings = new String[]{"1-2", "1-02", "1-20", "10-20", "fred", "jane", "pic01", - "pic2", "pic02", "pic02a", "pic3", "pic4", "pic 4 else", "pic 5", "pic05", "pic 5", - "pic 5 something", "pic 6", "pic 7", "pic33", "pic100", "pic100a", "pic120", "pic121", - "pic02000", "tom", "x2-g8", "x2-y7", "x2-y08", "x8-y8"}; - - List scrambled = Arrays.asList(strings); - Collections.shuffle(scrambled); - - Collections.sort(scrambled, new NaturalOrderComparator()); - assertEquals(Arrays.asList(strings), scrambled); - - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestOmaLinkUtil.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestOmaLinkUtil.java deleted file mode 100644 index 336ac3fad6c..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestOmaLinkUtil.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.net.MalformedURLException; -import org.junit.*; -import static org.junit.Assert.*; - -/** - * Tests the OmaLink Utility Class. - * - * @author Ethan Cerami. - */ -public class TestOmaLinkUtil { - private String queryStringParams1 = "cm=var&fts=all&var=17,7517830,G,C"; - private String queryStringParams2 = "from=601&prot=EGFR_HUMAN&to=800&var=C620Y"; - - @Test - public void testOmaLinkUtil1() throws MalformedURLException { - String omaLinkIn = "http://mutationassessor.org/?" + queryStringParams1; - String omaLinkOut = OmaLinkUtil.createOmaRedirectLink(omaLinkIn); - assertEquals("omaRedirect.do?site=mutationassessor.org/&" + queryStringParams1, omaLinkOut); - String omaLink = OmaLinkUtil.createOmaLink(omaLinkOut); - assertEquals (omaLinkIn, omaLink); - omaLink = OmaLinkUtil.createOmaLink("site=mutationassessor.org/&" + queryStringParams1); - assertEquals (omaLinkIn, omaLink); - } - - @Test - public void testOmaLinkUtil2() throws MalformedURLException { - String omaLinkIn = "http://mutationassessor.org/pdb.php?" + queryStringParams2; - String omaLinkOut = OmaLinkUtil.createOmaRedirectLink(omaLinkIn); - assertEquals("omaRedirect.do?site=mutationassessor.org/pdb.php&" + queryStringParams2, omaLinkOut); - String omaLink = OmaLinkUtil.createOmaLink(omaLinkOut); - assertEquals (omaLinkIn, omaLink); - } - - @Test - public void testOmaLinkUtil3() throws MalformedURLException { - String omaLinkIn = "http://xvar.org/pdb.php?" + queryStringParams2; - String omaLinkOut = OmaLinkUtil.createOmaRedirectLink(omaLinkIn); - String omaLink = OmaLinkUtil.createOmaLink(omaLinkOut); - assertEquals (omaLinkIn, omaLink); - } - - @Test - public void testOmaLinkUtil4() throws MalformedURLException { - String omaLinkIn = "mutationassessor.org/?" + queryStringParams1; - String omaLinkOut = OmaLinkUtil.createOmaRedirectLink(omaLinkIn); - assertEquals("omaRedirect.do?site=mutationassessor.org/&" + queryStringParams1, omaLinkOut); - String omaLink = OmaLinkUtil.createOmaLink("site=mutationassessor.org/&" + queryStringParams1); - assertEquals ("http://" + omaLinkIn, omaLink); - } - - private void testExpectedMalformedLink(String omaLinkIn) { - try { - String omaLinkOut = OmaLinkUtil.createOmaRedirectLink(omaLinkIn); - fail("call to OmaLinkUtil.createOmaRedirectLink(\"" + omaLinkIn + "\") was expected to generate an exception but returned: " + omaLinkOut); - } catch (MalformedURLException e) { - // expected .. no failure - } - } - - @Test - public void testOmaLinkUtil5() { - testExpectedMalformedLink("NA"); - testExpectedMalformedLink("[Not Available]"); - testExpectedMalformedLink(""); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestProfileMerger.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestProfileMerger.java deleted file mode 100644 index 7174a0affe4..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestProfileMerger.java +++ /dev/null @@ -1,83 +0,0 @@ -/* - * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - -import java.io.File; -import java.io.IOException; -import java.util.ArrayList; -import org.mskcc.cbio.io.WebFileConnect; -import org.mskcc.cbio.portal.model.GeneticAlterationType; -import org.mskcc.cbio.portal.model.GeneticProfile; -import org.mskcc.cbio.portal.model.ProfileData; -import static org.junit.Assert.*; - -/** - * JUnit test for Profile Merger. - */ -public class TestProfileMerger { - - /** - * Tests the Profile Merger Utility Class. - * - * @throws IOException IO Error. - */ - public void testProfileMerger() throws IOException { - ArrayList profileList = new ArrayList(); - - GeneticProfile profile0 = new GeneticProfile - ("gbm", 1, GeneticAlterationType.COPY_NUMBER_ALTERATION, "DISCRETE", - "CNA", "NA", true); - // TBD: change this to use getResourceAsStream() - String matrix0[][] = WebFileConnect.retrieveMatrix(new File("target/test-classes/cna_sample.txt")); - ProfileData data0 = new ProfileData(profile0, matrix0); - profileList.add(data0); - - GeneticProfile profile1 = new GeneticProfile - ("gbm", 1, GeneticAlterationType.MUTATION_EXTENDED, "MAF", - "MUTATION", "NA", true); - // TBD: change this to use getResourceAsStream() - String matrix1[][] = WebFileConnect.retrieveMatrix(new File("target/test-classes/mutation_sample.txt")); - ProfileData data1 = new ProfileData(profile1, matrix1); - profileList.add(data1); - - ProfileMerger merger = new ProfileMerger(profileList); - ProfileData mergedProfile = merger.getMergedProfile(); - String value = mergedProfile.getValue("BRCA1", "TCGA-02-0004"); - assertEquals(GeneticAlterationType.COPY_NUMBER_ALTERATION.name() + ":1;", value); - value = mergedProfile.getValue("BRCA2", "TCGA-06-0169"); - assertEquals(GeneticAlterationType.COPY_NUMBER_ALTERATION.name() + ":0;" - + GeneticAlterationType.MUTATION_EXTENDED.name() + ":P920S;", value); - //value = mergedProfile.getValue("BRCA1", "TCGA-06-0169"); - //assertEquals("", value); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestRequestBodyGZipFilter.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestRequestBodyGZipFilter.java deleted file mode 100644 index fe4d6487ca9..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestRequestBodyGZipFilter.java +++ /dev/null @@ -1,173 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import com.google.common.net.HttpHeaders; -import org.junit.Assert; -import org.junit.Test; -import org.mockito.ArgumentCaptor; -import org.mockito.Mockito; -import org.springframework.test.util.ReflectionTestUtils; - -import javax.servlet.FilterChain; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import javax.ws.rs.HttpMethod; -import java.io.ByteArrayInputStream; -import java.io.IOException; -import java.util.stream.Collectors; - -public class TestRequestBodyGZipFilter { - // This is the byte representation of a gzipped json file with the following contents: {"field":"value"} - private static final byte[] GZIPPED_JSON_FILE_BYTES = { - 31, -117, 8, 8, -58, -49, -50, 95, 0, 3, 103, 122, 105, 112, 95, 102, 105, 108, 116, 101, 114, 46, 106, 115, - 111, 110, 0, -85, 86, 74, -53, 76, -51, 73, 81, -78, 82, 42, 75, -52, 41, 77, 85, -86, -27, 2, 0, 47, 99, - 109, 9, 18, 0, 0, 0 - }; - - /** - * When I filter a request that doesn't have the gzip header, - * the request should not be wrapped, and chain.doFilter should - * be called on the same request object passed to the method. - */ - @Test - public void testDoFilterEnabledNotGZipped() throws Exception { - RequestBodyGZipFilter subject = createRequestBodyGZipFilter(true, 50000000); - - HttpServletRequest request = createHttpServletRequest(null, HttpMethod.POST); - HttpServletResponse response = Mockito.mock(HttpServletResponse.class); - FilterChain chain = Mockito.mock(FilterChain.class); - - subject.doFilter(request, response, chain); - - // request should not be wrapped - Mockito.verify(chain, Mockito.times(1)).doFilter(request, response); - } - - /** - * When I filter a request that has the gzip header, but the gzip - * feature is disabled, the doFilter method should throw an exception. - */ - @Test(expected = IllegalStateException.class) - public void testDoFilterDisabledGZipped() throws Exception { - RequestBodyGZipFilter subject = createRequestBodyGZipFilter(false, 50000000); - - HttpServletRequest request = createHttpServletRequest("gzip", HttpMethod.POST); - HttpServletResponse response = Mockito.mock(HttpServletResponse.class); - FilterChain chain = Mockito.mock(FilterChain.class); - - subject.doFilter(request, response, chain); - } - - /** - * When I filter a request that has the gzip header and the gzip - * feature is enabled, but the method is something other than POST, - * the doFilter method should throw an exception. - */ - @Test(expected = IllegalStateException.class) - public void testDoFilterEnabledGZippedBadMethod() throws Exception { - RequestBodyGZipFilter subject = createRequestBodyGZipFilter(true, 50000000); - - HttpServletRequest request = createHttpServletRequest("gzip", HttpMethod.GET); - HttpServletResponse response = Mockito.mock(HttpServletResponse.class); - FilterChain chain = Mockito.mock(FilterChain.class); - - subject.doFilter(request, response, chain); - } - - /** - * When I filter a request that has the gzip header and the gzip - * feature is enabled and the method is POST, the doFilter method - * should wrap the request with a GzippedInputStreamWrapper. - * The BufferedReader for this GzippedInputStreamWrapper should return - * the contents of the gzipped file used to create the original input stream. - */ - @Test - public void testDoFilterEnabledGZipped() throws Exception { - RequestBodyGZipFilter subject = createRequestBodyGZipFilter(true, 50000000); - - GzippedJsonFileInputStream stream = new GzippedJsonFileInputStream(); - HttpServletRequest request = createHttpServletRequest("gzip", HttpMethod.POST); - Mockito.when(request.getInputStream()).thenReturn(stream); - - HttpServletResponse response = Mockito.mock(HttpServletResponse.class); - FilterChain chain = Mockito.mock(FilterChain.class); - - subject.doFilter(request, response, chain); - - // Request should be wrapped, so the request should now be a GzippedInputStreamWrapper - ArgumentCaptor requestArg = - ArgumentCaptor.forClass(GzippedInputStreamRequestWrapper.class); - ArgumentCaptor responseArg = ArgumentCaptor.forClass(HttpServletResponse.class); - Mockito.verify(chain, Mockito.times(1)).doFilter(requestArg.capture(), responseArg.capture()); - GzippedInputStreamRequestWrapper wrappedStream = requestArg.getValue(); - - String actualRequestBody = wrappedStream.getReader().lines().collect(Collectors.joining()); - String expectedRequestBody = "{\"field\":\"value\"}"; - Assert.assertEquals(expectedRequestBody, actualRequestBody); - } - - /** - * When I filter a request that has the gzip header and the gzip - * feature is enabled and the method is POST, but the unzipped message - * body is larger than maxInflatedRequestBodySize, the doFilter method - * should wrap the request with a GzippedInputStreamWrapper. - * The BufferedReader for this GzippedInputStreamWrapper should throw an - * IOException as it is read. This exception gets turned into - * an UncheckedIOException by something, so we'll check for that instead. - */ - @Test(expected = IOException.class) - public void testDoFilterEnabledGZippedButTooLong() throws Exception { - RequestBodyGZipFilter subject = createRequestBodyGZipFilter(true, 1); - - GzippedJsonFileInputStream stream = new GzippedJsonFileInputStream(); - HttpServletRequest request = createHttpServletRequest("gzip", HttpMethod.POST); - Mockito.when(request.getInputStream()).thenReturn(stream); - - HttpServletResponse response = Mockito.mock(HttpServletResponse.class); - FilterChain chain = Mockito.mock(FilterChain.class); - - subject.doFilter(request, response, chain); - - // Request should be wrapped, so the request should now be a GzippedInputStreamWrapper - ArgumentCaptor requestArg = - ArgumentCaptor.forClass(GzippedInputStreamRequestWrapper.class); - ArgumentCaptor responseArg = ArgumentCaptor.forClass(HttpServletResponse.class); - Mockito.verify(chain, Mockito.times(1)).doFilter(requestArg.capture(), responseArg.capture()); - GzippedInputStreamRequestWrapper wrappedStream = requestArg.getValue(); - - //this should cause an IOException - wrappedStream.getReader().lines().collect(Collectors.joining()); - } - - - private RequestBodyGZipFilter createRequestBodyGZipFilter(boolean enabled, int requestBodySize) { - RequestBodyGZipFilter subject = new RequestBodyGZipFilter(); - ReflectionTestUtils.setField(subject, "maxInflatedRequestBodySize", requestBodySize); - ReflectionTestUtils.setField(subject, "enabled", enabled); - return subject; - } - - private HttpServletRequest createHttpServletRequest(String gzip, String httpMethod) { - HttpServletRequest request = Mockito.mock(HttpServletRequest.class); - Mockito.when(request.getHeader(HttpHeaders.CONTENT_ENCODING)).thenReturn(gzip); - Mockito.when(request.getMethod()).thenReturn(httpMethod); - return request; - } - - /** - * TestInputStream wraps a FileInputStream so that it can be ServletInputStream - * and passed to Filter::doFilter. - */ - private static class GzippedJsonFileInputStream extends ServletInputStream { - private final ByteArrayInputStream byteInputStream; - - GzippedJsonFileInputStream() { - this.byteInputStream = new ByteArrayInputStream(GZIPPED_JSON_FILE_BYTES); - } - - @Override - public int read() throws IOException { - return byteInputStream.read(); - } - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestStableIdUtil.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestStableIdUtil.java deleted file mode 100644 index aaaca6634bb..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestStableIdUtil.java +++ /dev/null @@ -1,46 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; - - -import static org.junit.Assert.assertEquals; - -import org.junit.Test; - -/** - * Tests the StableIdUtil Class. - * - * @author pieter lukasse. - */ -public class TestStableIdUtil { - - @Test - public void testId1() { - String barcode = "TCGA-13-1479-01A-01W"; - String sampleId = StableIdUtil.getSampleId(barcode); - assertEquals ("TCGA-13-1479-01", sampleId); - } - - -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestStructuralVariantUtil.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestStructuralVariantUtil.java deleted file mode 100644 index d1fc3630fe2..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestStructuralVariantUtil.java +++ /dev/null @@ -1,88 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import org.junit.Assert; -import org.junit.Test; -import org.mskcc.cbio.portal.model.StructuralVariant; - -/** - * @author ochoaa - */ -public class TestStructuralVariantUtil { - private StructuralVariantUtil structuralVariantUtil = new StructuralVariantUtil("", null); - - @Test - public void testValidStructuralVariantRecordWithCompleteGeneTranscriptInfo() { - // confirm that record meets minimum requirements for import - // record has site 1 entrez id and missing site 1 hugo symbol - // and missing site 2 entrez id but present site 2 hugo symbol - StructuralVariant record = new StructuralVariant(); - record.setSampleId("SMP0001"); - record.setSvStatus("SOMATIC"); - record.setSite1EntrezGeneId(654684L); - record.setSite1HugoSymbol("NA"); - record.setSite1EnsemblTranscriptId("ENST29O3403"); - record.setSite1Region("exon"); - record.setSite1RegionNumber(5); - record.setSite2EntrezGeneId(-1L); - record.setSite2HugoSymbol("ALK1"); - record.setSite2EnsemblTranscriptId("ENST2843757657"); - record.setSite2Region("exon"); - record.setSite2RegionNumber(7); - Assert.assertTrue(structuralVariantUtil.hasRequiredStructuralVariantFields(record)); - } - - @Test - public void testValidStructuralVariantRecordMissingGeneInfo() { - // confirm that record does meet minimum requirements for import - // record is missing site 1 gene info (renders record invalid) - // and missing site 2 entrez id but present site 2 hugo symbol - StructuralVariant record = new StructuralVariant(); - record.setSampleId("SMP0001"); - record.setSvStatus("SOMATIC"); - record.setSite1EntrezGeneId(Long.MIN_VALUE); - record.setSite1HugoSymbol("NA"); - record.setSite1EnsemblTranscriptId("ENST29O3403"); - record.setSite1Region("exon"); - record.setSite1RegionNumber(5); - record.setSite2EntrezGeneId(Long.MIN_VALUE); - record.setSite2HugoSymbol("ALK1"); - record.setSite2EnsemblTranscriptId("ENST2843757657"); - record.setSite2Region("exon"); - record.setSite2RegionNumber(7); - Assert.assertTrue(structuralVariantUtil.hasRequiredStructuralVariantFields(record)); - } - - @Test - public void testValidStructuralVariantRecordMissingSampleId() { - StructuralVariant record = new StructuralVariant(); - record.setSvStatus("SOMATIC"); - record.setSite1EntrezGeneId(654684L); - record.setSite1HugoSymbol("NA"); - record.setSite1EnsemblTranscriptId("NA"); - record.setSite1Region("NA"); - record.setSite1RegionNumber(-1); - record.setSite2EntrezGeneId(Long.MIN_VALUE); - record.setSite2HugoSymbol("ALK1"); - record.setSite2EnsemblTranscriptId("NA"); - record.setSite2Region("NA"); - record.setSite2RegionNumber(-1); - Assert.assertFalse(structuralVariantUtil.hasRequiredStructuralVariantFields(record)); - } - - @Test - public void testValidStructuralVariantRecordMissingSvStatus() { - StructuralVariant record = new StructuralVariant(); - record.setSampleId("SMP0001"); - record.setSite1EntrezGeneId(654684L); - record.setSite1HugoSymbol("NA"); - record.setSite1EnsemblTranscriptId("NA"); - record.setSite1Region("NA"); - record.setSite1RegionNumber(-1); - record.setSite2EntrezGeneId(Long.MIN_VALUE); - record.setSite2HugoSymbol("ALK1"); - record.setSite2EnsemblTranscriptId("NA"); - record.setSite2Region("NA"); - record.setSite2RegionNumber(-1); - Assert.assertFalse(structuralVariantUtil.hasRequiredStructuralVariantFields(record)); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestTransactionalScripts.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestTransactionalScripts.java deleted file mode 100644 index 0da32e62f18..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestTransactionalScripts.java +++ /dev/null @@ -1,37 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.ApplicationContext; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/demoScript.xml", "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestTransactionalScripts { - - @Autowired - private ApplicationContext applicationContext; - - @Before - public void setUp() { - DaoCancerStudy.reCacheAll(); - } - - /** - * A basic test of using the context to drive a set of scripts. - */ - @Test - public void testScripts() { - TransactionalScripts scripts = applicationContext.getBean(TransactionalScripts.class); - scripts.run(); - } - -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/TestValueParser.java b/core/src/test/java/org/mskcc/cbio/portal/util/TestValueParser.java deleted file mode 100644 index e42a794b187..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/TestValueParser.java +++ /dev/null @@ -1,311 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.util; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertTrue; -import org.junit.Assert; - -import org.junit.Test; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ComparisonOp; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ConcreteDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DiscreteDataTypeSetSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.DiscreteDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneSet; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneWithSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticDataTypes; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.GeneticTypeLevel; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintGeneDisplaySpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.OncoPrintSpecification; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.ParsedFullDataTypeSpec; -import org.mskcc.cbio.portal.oncoPrintSpecLanguage.TestOncoPrintSpecificationLibrary; - -public class TestValueParser { - // TODO: reorganize to test individual methods separately in different - // methods - - @Test - public void testValueParser() { - - ValueParser parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:3;", 1.0); - assertTrue(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - assertTrue(parser.isCnaAmplified()); - assertFalse(parser.isCnaGained()); - assertTrue(parser.isMutated()); - assertTrue(parser.isGeneAltered()); - // default CNA alteration is AMP and HOMDEL - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:3;", 4.0); - assertFalse(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - assertTrue(parser.isCnaAmplified()); - assertFalse(parser.isCnaGained()); - assertTrue(parser.isMutated()); - assertTrue(parser.isGeneAltered()); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:-3;", 2.0); - assertFalse(parser.isMRNAWayUp()); - assertTrue(parser.isMRNAWayDown()); - assertTrue(parser.isGeneAltered()); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - try { - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:3;", -2.0); - } catch (Exception e) { - assertEquals("zScoreThreshold must be greater than 0", e.getMessage()); - } - - String[] genes = { "g1", "gene2" }; - OncoPrintSpecification anOncoPrintSpecification = new OncoPrintSpecification(genes); - - OncoPrintGeneDisplaySpec aDefaultOncoPrintGeneDisplaySpec = new OncoPrintGeneDisplaySpec(); - aDefaultOncoPrintGeneDisplaySpec.setDefault( 1.0, 1.0 ); - GeneSet aGeneSet = new GeneSet(); - String[] moreGenes = { "P53", "Last" }; - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = TestOncoPrintSpecificationLibrary - .createTestOncoPrintGeneDisplaySpec(); - aGeneSet = new GeneSet(); - for (String g : moreGenes) { - aGeneSet.addGeneWithSpec(new GeneWithSpec(g, theOncoPrintGeneDisplaySpec)); - } - anOncoPrintSpecification.add(aGeneSet); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:3;", 2.0, 1.0, - aDefaultOncoPrintGeneDisplaySpec); - assertTrue(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - assertTrue(parser.isCnaAmplified()); - assertFalse(parser.isCnaGained()); - assertEquals(GeneticTypeLevel.Amplified, parser.getCNAlevel()); - assertTrue(parser.isMutated()); - assertTrue(parser.isGeneAltered()); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = ValueParser.generateValueParser("g1", "COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:3;", 2.0, 1.0, - anOncoPrintSpecification); - assertTrue(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - assertTrue(parser.isCnaAmplified()); - assertFalse(parser.isCnaGained()); - assertEquals(GeneticTypeLevel.Amplified, parser.getCNAlevel()); - assertTrue(parser.isMutated()); - assertTrue(parser.isGeneAltered()); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:1;MUTATION_EXTENDED:1;MRNA_EXPRESSION:-3;", 2.0, 1.0, - aDefaultOncoPrintGeneDisplaySpec); - assertFalse(parser.isMRNAWayUp()); - assertTrue(parser.isMRNAWayDown()); - assertFalse(parser.isCnaAmplified()); - assertFalse(parser.isCnaGained()); // default spec; shows all data, except - // only show CNA of AMP and HOMDEL - assertEquals(null, parser.getCNAlevel()); - assertTrue(parser.isMutated()); - assertTrue(parser.isGeneAltered()); - assertFalse(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertFalse(parser.isMRNAWayUp()); - assertTrue(parser.isMRNAWayDown()); - assertTrue(parser.isCnaAmplified()); - assertEquals(GeneticTypeLevel.Amplified, parser.getCNAlevel()); - assertFalse(parser.isCnaGained()); - assertFalse(parser.isMutated()); - assertTrue(parser.wasSequenced()); - assertTrue(parser.isGeneAltered()); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - // no such gene - parser = ValueParser.generateValueParser("None", "sdfdsf", 0.0, 1.0,anOncoPrintSpecification); - assertEquals(null, parser); - - ParsedFullDataTypeSpec aParsedFullDataTypeSpec = new ParsedFullDataTypeSpec(); - aParsedFullDataTypeSpec.addSpec(new ConcreteDataTypeSpec(GeneticDataTypes.Methylation)); - aParsedFullDataTypeSpec.addSpec(new DiscreteDataTypeSpec(GeneticDataTypes.CopyNumberAlteration, ComparisonOp - .convertCode(">"), GeneticTypeLevel.HemizygouslyDeleted)); - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.5, 1.0, - aParsedFullDataTypeSpec.cleanUpInput()); - assertFalse(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - assertTrue(parser.isCnaAmplified()); - assertFalse(parser.isCnaGained()); - assertFalse(parser.isMutated()); - assertEquals(GeneticTypeLevel.Amplified, parser.getCNAlevel()); - assertTrue(parser.wasSequenced()); - assertTrue(parser.isGeneAltered()); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MRNA_EXPRESSION:1;", 0.5); - assertFalse(parser.isMutated()); - assertFalse(parser.wasSequenced()); - assertTrue(parser.isGeneAltered()); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MRNA_EXPRESSION:blah;MUTATION_EXTENDED:0;", 0.5); - assertFalse(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - assertTrue(parser.wasSequenced()); - assertTrue(parser.isGeneAltered()); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:;MRNA_EXPRESSION:;MUTATION_EXTENDED:;", 0.5); - assertFalse(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - - // TODO: IMPORTANT: these tests fail, but do we care about them? is "MUTATION:" a legitimate value? -// assertFalse(parser.wasSequenced()); -// assertFalse(parser.isGeneAltered()); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MRNA_EXPRESSION:1;MUTATION_EXTENDED:nan;", 0.5); - assertFalse(parser.isMutated()); - assertFalse(parser.wasSequenced()); - assertTrue(parser.isGeneAltered()); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MRNA_EXPRESSION:1;MUTATION_EXTENDED:0;", 0.5); - assertFalse(parser.isMutated()); - assertTrue(parser.wasSequenced()); - assertTrue(parser.isGeneAltered()); - - aParsedFullDataTypeSpec = new ParsedFullDataTypeSpec(); - aParsedFullDataTypeSpec.addSpec(new DiscreteDataTypeSpec(GeneticDataTypes.Mutation, ComparisonOp - .convertCode("<="), GeneticTypeLevel.Normal)); - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.5, 1.0, - aParsedFullDataTypeSpec.cleanUpInput()); - assertFalse(parser.isMutated()); - assertTrue(parser.wasSequenced()); - assertFalse(parser.isGeneAltered()); // because the filter only shows - // 'normal' mutation levels; an - // absurd use - - parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MRNA_EXPRESSION:1;", 0.5); - assertFalse(parser.isMutated()); - assertFalse(parser.wasSequenced()); - assertTrue(parser.isGeneAltered()); - - parser = ValueParser.generateValueParser("g1", "COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:3;", 1.0, 1.0, - anOncoPrintSpecification); - - assertTrue(parser.isCnaAmplified()); - assertFalse(parser.isCnaGained()); - assertTrue(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); // because anOncoPrintSpecification - // has no mRNA inequalities, the - // zScore rules - assertTrue(parser.isMutated()); - - parser = ValueParser.generateValueParser("P53", "COPY_NUMBER_ALTERATION:1;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0, 1.0, - anOncoPrintSpecification); - assertFalse(parser.isCnaAmplified()); - assertTrue(parser.isCnaGained()); - assertFalse(parser.isCnaDiploid()); - assertFalse(parser.isCnaHemizygouslyDeleted()); - assertFalse(parser.isCnaHomozygouslyDeleted()); - assertFalse(parser.isMRNAWayUp()); - assertTrue(parser.isMRNAWayDown()); // because theOncoPrintGeneDisplaySpec - // filter rules combine to E<2 E>=3 - assertFalse(parser.isMutated()); // because filter rules ignores Mutations - - parser = new ValueParser("COPY_NUMBER_ALTERATION:1;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1.5;", 1.0f); - assertFalse(parser.isCnaAmplified()); - assertTrue(parser.isCnaGained()); - assertFalse(parser.isCnaDiploid()); - assertFalse(parser.isCnaHemizygouslyDeleted()); - assertFalse(parser.isCnaHomozygouslyDeleted()); - assertTrue(parser.isMRNAWayUp()); - assertFalse(parser.isMRNAWayDown()); - - try { - parser.isDiscreteTypeThisLevel(GeneticDataTypes.Expression, GeneticTypeLevel.Amplified); - Assert.fail("should throw IllegalArgumentException( )"); - } catch (Exception e) { - assertEquals("theDiscreteGeneticDataType is not a discrete datatype", e.getMessage()); - } - - } - - @Test - public void testIsDiscreteTypeAltered() { - - OncoPrintGeneDisplaySpec theOncoPrintGeneDisplaySpec = TestOncoPrintSpecificationLibrary - .createTestOncoPrintGeneDisplaySpec(); - ValueParser parser = new ValueParser("COPY_NUMBER_ALTERATION:2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:1;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:0;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertFalse(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:-1;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertFalse(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:-2;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("MUTATION:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, theOncoPrintGeneDisplaySpec); - assertFalse(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:nan;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertFalse(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION: JUNK;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertFalse(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - parser = new ValueParser("COPY_NUMBER_ALTERATION:4;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertFalse(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - ParsedFullDataTypeSpec aParsedFullDataTypeSpec = new ParsedFullDataTypeSpec( ); - aParsedFullDataTypeSpec.addSpec( new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Gained) ); - aParsedFullDataTypeSpec.addSpec( new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Amplified) ); - aParsedFullDataTypeSpec.addSpec( new DiscreteDataTypeSetSpec( GeneticDataTypes.CopyNumberAlteration, - GeneticTypeLevel.Diploid ) ); - theOncoPrintGeneDisplaySpec = aParsedFullDataTypeSpec.cleanUpInput(); - parser = new ValueParser("COPY_NUMBER_ALTERATION:0;MUTATION_EXTENDED:C135F;MRNA_EXPRESSION:1;", 0.0, 1.0, - theOncoPrintGeneDisplaySpec); - assertTrue(parser.isDiscreteTypeAltered(GeneticDataTypes.CopyNumberAlteration)); - - } - -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/util/UrlParamFilterTest.java b/core/src/test/java/org/mskcc/cbio/portal/util/UrlParamFilterTest.java deleted file mode 100644 index ad80f0575b3..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/util/UrlParamFilterTest.java +++ /dev/null @@ -1,43 +0,0 @@ -package org.mskcc.cbio.portal.util; - -import org.junit.Rule; -import org.junit.Test; -import org.junit.rules.ExpectedException; -import org.mockito.Mockito; - -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.security.InvalidParameterException; - -public class UrlParamFilterTest { - @Rule - public ExpectedException exceptionRule = ExpectedException.none(); - - @Test - public void shouldFilterMaliciousURL() throws ServletException, IOException { - HttpServletRequest request = Mockito.mock(HttpServletRequest.class); - Mockito.when(request.getParameter("configUrl")).thenReturn("asdf"); - HttpServletResponse response = Mockito.mock(HttpServletResponse.class); - FilterChain chain = Mockito.mock(FilterChain.class); - - exceptionRule.expect(InvalidParameterException.class); - new UrlParamFilter().doFilter(request, response, chain); - - Mockito.verify(chain, Mockito.times(0)).doFilter(request, response); - } - - @Test - public void shouldNotFilterRegularURL() throws ServletException, IOException { - HttpServletRequest request = Mockito.mock(HttpServletRequest.class); - Mockito.when(request.getParameter("configUrl")).thenReturn(null); - HttpServletResponse response = Mockito.mock(HttpServletResponse.class); - FilterChain chain = Mockito.mock(FilterChain.class); - - new UrlParamFilter().doFilter(request, response, chain); - - Mockito.verify(chain, Mockito.times(1)).doFilter(request, response); - } -} \ No newline at end of file diff --git a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetGeneticProfiles.java b/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetGeneticProfiles.java deleted file mode 100644 index 229758146d9..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetGeneticProfiles.java +++ /dev/null @@ -1,62 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoException; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -/** - * JUnit test for GeneticProfile class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestGetGeneticProfiles { - - @Test - public void testDaoGeneticProfile() throws DaoException { - - - String output = GetGeneticProfiles.getGeneticProfilesAsTable("study_tcga_pub"); - assertTrue(output.contains("study_tcga_pub_mrna\tmRNA expression (microarray)\tExpression levels (Agilent microarray).\t1\tMRNA_EXPRESSION\tfalse")); - assertTrue(output.contains("study_tcga_pub_mutations\tMutations\tMutation data from whole exome sequencing.\t1\tMUTATION_EXTENDED\ttrue")); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetMutSig.java b/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetMutSig.java deleted file mode 100644 index 7dcc69469c6..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetMutSig.java +++ /dev/null @@ -1,98 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoGeneOptimized; -import org.mskcc.cbio.portal.dao.DaoGeneticProfile; -import org.mskcc.cbio.portal.dao.DaoMutSig; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.CanonicalGene; -import org.mskcc.cbio.portal.model.MutSig; -import org.mskcc.cbio.portal.dao.DaoException; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.*; - -/** - * @author Lennart Bastian - */ - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestGetMutSig { - - int studyId; - - @Before - public void setUp() throws DaoException - { - studyId = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub").getInternalId(); - DaoGeneticProfile.reCache(); - } - - @Test - public void testGetMutSig() throws DaoException, IOException { - - DaoGeneOptimized daoGeneOptimized = DaoGeneOptimized.getInstance(); - CanonicalGene gene = daoGeneOptimized.getGene("AKT1"); - CanonicalGene gene2 = daoGeneOptimized.getGene("AKT2"); - - MutSig mutSig = new MutSig(1, gene, 1, 502500, 20, 1E-11f, 1E-8f); - MutSig mutSig2 = new MutSig(1, gene2, 14, 273743, 3, 1E-11f, 1E-8f); - - assertTrue(1E-11f == mutSig.getpValue()); - assertTrue(1E-8f == mutSig2.getqValue()); - - DaoMutSig.addMutSig(mutSig); - DaoMutSig.addMutSig(mutSig2); - - StringBuffer stringBuffer = GetMutSig.getMutSig(studyId); - - String lines[] = stringBuffer.toString().split("\n"); - assertEquals("Cancer\tEntrez\tHugo\tRank\tN\tn\tnVal\tnVer\tCpG\tC+G\tA+T\tINDEL\tp\tq", lines[0]); - assertEquals("1\t207\tAKT1\t1\t502500\t20\t1.0E-11\t1.0E-8", lines[1]); - } -} - diff --git a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetProfileData.java b/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetProfileData.java deleted file mode 100644 index 03b860a1061..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetProfileData.java +++ /dev/null @@ -1,120 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.*; -import org.mskcc.cbio.portal.model.*; -import org.mskcc.cbio.portal.util.*; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.File; -import java.io.IOException; -import java.util.ArrayList; - -/** - * JUnit test for GetProfileData class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestGetProfileData { - - int geneticProfileId; - - @Before - public void setUp() throws DaoException { - int studyId = DaoCancerStudy.getCancerStudyByStableId("study_tcga_pub").getInternalId(); - - DaoPatient.reCache(); - DaoSample.reCache(); - DaoGeneticProfile.reCache(); - - GeneticProfile newGeneticProfile = new GeneticProfile(); - newGeneticProfile.setCancerStudyId(studyId); - newGeneticProfile.setGeneticAlterationType(GeneticAlterationType.COPY_NUMBER_ALTERATION); - newGeneticProfile.setStableId("study_tcga_pub_test"); - newGeneticProfile.setProfileName("Barry CNA Results"); - newGeneticProfile.setDatatype("test"); - DaoGeneticProfile.addGeneticProfile(newGeneticProfile); - - geneticProfileId = DaoGeneticProfile.getGeneticProfileByStableId("study_tcga_pub_test").getGeneticProfileId(); - } - - @Test - public void testGetProfileData() throws DaoException, IOException { - DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance(); - daoGene.addGene(new CanonicalGene(207, "AKT1")); - daoGene.addGene(new CanonicalGene(208, "AKT2")); - daoGene.addGene(new CanonicalGene(10000, "AKT3")); - daoGene.addGene(new CanonicalGene(369, "ARAF")); - daoGene.addGene(new CanonicalGene(472, "ATM")); - daoGene.addGene(new CanonicalGene(673, "BRAF")); - daoGene.addGene(new CanonicalGene(672, "BRCA1")); - daoGene.addGene(new CanonicalGene(675, "BRCA2")); - - ArrayList targetGeneList = new ArrayList (); - targetGeneList.add("AKT1"); - targetGeneList.add("AKT2"); - targetGeneList.add("AKT3"); - targetGeneList.add("ATM"); - targetGeneList.add("BRCA1"); - - ArrayList geneticProfileIdList = new ArrayList(); - geneticProfileIdList.add("study_tcga_pub_gistic"); - - ArrayList sampleIdList = new ArrayList (); - sampleIdList.add("TCGA-A1-A0SB-01"); - sampleIdList.add("TCGA-A1-A0SD-01"); - sampleIdList.add("TCGA-A1-A0SE-01"); - - GetProfileData getProfileData = new GetProfileData(geneticProfileIdList, targetGeneList, - sampleIdList, Boolean.FALSE); - String out = getProfileData.getRawContent(); - String lines[] = out.split("\n"); - assertEquals("# DATA_TYPE\t Putative copy-number alterations from GISTIC" , lines[0]); - assertEquals("# COLOR_GRADIENT_SETTINGS\t COPY_NUMBER_ALTERATION", lines[1]); - assertTrue(lines[2].startsWith("GENE_ID\tCOMMON\tTCGA-A1-A0SB-01\t" + - "TCGA-A1-A0SD-01\tTCGA-A1-A0SE-01")); - assertTrue(lines[3].startsWith("207\tAKT1\t0\t0\t0")); - assertTrue(lines[4].startsWith("208\tAKT2\t0\t0\t0")); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetSampleList.java b/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetSampleList.java deleted file mode 100644 index 659d4a7d8c7..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetSampleList.java +++ /dev/null @@ -1,59 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -/** - * JUnit test for GetSampleLists class. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestGetSampleList { - - @Test - public void testGetSampleList() throws Exception { - - String[] sampleList = GetSampleLists.getSampleListsAsTable("study_tcga_pub").split("\n"); - assertTrue(sampleList[1].startsWith("study_tcga_pub_all\tAll Tumors\tAll tumor samples (14 samples)\t1\tTCGA-A1-A0SB-01")); - } -} diff --git a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetTypesOfCancer.java b/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetTypesOfCancer.java deleted file mode 100644 index 1e9e321617b..00000000000 --- a/core/src/test/java/org/mskcc/cbio/portal/web_api/TestGetTypesOfCancer.java +++ /dev/null @@ -1,180 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.portal.web_api; - - -import org.junit.After; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mskcc.cbio.portal.dao.DaoCancerStudy; -import org.mskcc.cbio.portal.dao.DaoException; -import org.mskcc.cbio.portal.dao.DaoTypeOfCancer; -import org.mskcc.cbio.portal.model.CancerStudy; -import org.mskcc.cbio.portal.model.TypeOfCancer; -import org.springframework.test.annotation.Rollback; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.transaction.annotation.Transactional; - -import static org.junit.Assert.*; - -import java.io.IOException; - -/** - * JUnit Tests for GetTypes of Cancer. - * - * @author Ethan Cerami, Arthur Goldberg, Ersin Ciftci. - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations = { "classpath:/applicationContext-dao.xml" }) -@Rollback -@Transactional -public class TestGetTypesOfCancer { - - public static final String DESCRIPTION = "The Cancer Genome Atlas (TCGA)" + - " Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. " + - "Raw data via the TCGA Data Portal."; - - - @Before - public void setUp() throws DaoException { - //clear cache to ensure this test is not affected by other tests (i.e. some tests add the same - //samples to the DB and these remain in the cache after tests are done...if tests don't implement - //teardown properly). - DaoCancerStudy.reCacheAll(); - } - - @After - public void tearDown() { - //clear any cached data: - DaoCancerStudy.reCacheAll(); - } - - /** - * Tests Get Types of Cancer. - * @throws DaoException Database Error. - * @throws IOException IO Error. - * @throws ProtocolException ProtocolError. - */ - @Test - public void testGetTypesOfCancerEmpty() throws DaoException, IOException, ProtocolException { - - // First, verify that protocol exception is thrown when there are no cancer types - try { - DaoCancerStudy.deleteCancerStudy("study_tcga_pub"); - DaoTypeOfCancer.deleteAllTypesOfCancer(); - String output = GetTypesOfCancer.getTypesOfCancer(); - fail ("ProtocolException should have been thrown."); - } catch (ProtocolException e) { - assertEquals(e.getMsg(), "No Types of Cancer Available."); - } - } - - @Test - public void testGetTypesOfCancer() throws DaoException, IOException, ProtocolException { - //remove study and all cancer types: - DaoCancerStudy.deleteCancerStudy("study_tcga_pub"); - DaoTypeOfCancer.deleteAllTypesOfCancer(); - - // Verify a few of the data lines - TypeOfCancer typeOfCancer1 = new TypeOfCancer(); - typeOfCancer1.setName("Adenoid Cystic Breast Cancer"); - typeOfCancer1.setTypeOfCancerId("acbc"); - DaoTypeOfCancer.addTypeOfCancer(typeOfCancer1); - - TypeOfCancer typeOfCancer2 = new TypeOfCancer(); - typeOfCancer2.setName("Breast Invasive Carcinoma"); - typeOfCancer2.setTypeOfCancerId("brca"); - DaoTypeOfCancer.addTypeOfCancer(typeOfCancer2); - - String output = GetTypesOfCancer.getTypesOfCancer(); - assertTrue(output.contains("acbc\tAdenoid Cystic Breast Cancer")); - assertTrue(output.contains("brca\tBreast Invasive Carcinoma")); - - // Verify header - String lines[] = output.split("\n"); - assertEquals ("type_of_cancer_id\tname", lines[0].trim()); - } - - /** - * Tests Get Cancer Studies. - * @throws DaoException Database Error. - * @throws IOException IO Error. - * @throws ProtocolException ProtocolError. - */ - @Test - public void testGetCancerStudiesEmpty() throws DaoException, IOException, ProtocolException { - - // First, verify that protocol exception is thrown when there are no cancer studies - try { - DaoCancerStudy.deleteCancerStudy("study_tcga_pub"); - DaoTypeOfCancer.deleteAllTypesOfCancer(); - String output = GetTypesOfCancer.getCancerStudies(); - fail ("ProtocolException should have been thrown."); - } catch (ProtocolException e) { - assertEquals(e.getMsg(), "No Cancer Studies Available."); - } - } - - @Test - public void testGetCancerStudies() throws DaoException, IOException, ProtocolException { - - //remove study and all cancer types: - DaoCancerStudy.deleteCancerStudy("study_tcga_pub"); - DaoTypeOfCancer.deleteAllTypesOfCancer(); - - //Add dummy cancer type and dummy study on empty DB: - TypeOfCancer typeOfCancer2 = new TypeOfCancer(); - typeOfCancer2.setName("Breast Invasive Carcinoma"); - typeOfCancer2.setTypeOfCancerId("brca_testapi2"); - DaoTypeOfCancer.addTypeOfCancer(typeOfCancer2); - - CancerStudy cancerStudy = new CancerStudy("Breast Invasive Carcinoma (TCGA, Nature 2012)", DESCRIPTION, - "study_tcga_pub_testapi2", "brca_testapi2", true); - cancerStudy.setReferenceGenome("hg19"); - DaoCancerStudy.addCancerStudy(cancerStudy, true); - - String output = GetTypesOfCancer.getCancerStudies(); - String lines[] = output.split("\n"); - - // Verify we get exactly two lines - assertEquals (2, lines.length); - - // Verify header - assertEquals ("cancer_study_id\tname\tdescription", lines[0].trim()); - - // Verify data - assertEquals ("study_tcga_pub_testapi2\tBreast Invasive Carcinoma (TCGA, Nature 2012)\t" + DESCRIPTION, lines[1].trim()); - } -} diff --git 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(Human)","accession":"O14640","taxid":"9606"},"motifs":[{"colour":"#00ffff","type":"low_complexity","metadata":{"database":"seg","score":"1.6700","type":"low_complexity","start":"144","end":"158"},"start":"144","end":"158","display":false},{"colour":"#86bcff","type":"low_complexity","metadata":{"database":"seg","score":"3.2400","type":"low_complexity","start":"176","end":"230"},"start":216,"end":"230","display":null},{"colour":"#86bcff","type":"low_complexity","metadata":{"database":"seg","score":"2.1300","type":"low_complexity","start":"235","end":"246"},"start":"235","end":"246","display":null},{"colour":"#86bcff","type":"low_complexity","metadata":{"database":"seg","score":"2.3200","type":"low_complexity","start":"380","end":"397"},"start":"380","end":"397","display":null},{"colour":"#00ffff","type":"low_complexity","metadata":{"database":"seg","score":"2.8200","type":"low_complexity","start":"522","end":"554"},"start":"522","end":"554","display":false},{"colour":"#00ffff","type":"low_complexity","metadata":{"database":"seg","score":"2.9000","type":"low_complexity","start":"557","end":"604"},"start":"557","end":"604","display":false},{"colour":"#00ffff","type":"low_complexity","metadata":{"database":"seg","score":"1.5700","type":"low_complexity","start":"653","end":"663"},"start":"653","end":"663","display":false}]}] \ No newline at end of file diff --git a/core/src/test/resources/all_cases.txt b/core/src/test/resources/all_cases.txt deleted file mode 100644 index d725bf72389..00000000000 --- a/core/src/test/resources/all_cases.txt +++ /dev/null @@ -1,206 +0,0 @@ -TCGA-02-0001 -TCGA-02-0003 -TCGA-02-0004 -TCGA-02-0006 -TCGA-02-0007 -TCGA-02-0009 -TCGA-02-0010 -TCGA-02-0011 -TCGA-02-0014 -TCGA-02-0015 -TCGA-02-0016 -TCGA-02-0021 -TCGA-02-0023 -TCGA-02-0024 -TCGA-02-0025 -TCGA-02-0026 -TCGA-02-0027 -TCGA-02-0028 -TCGA-02-0033 -TCGA-02-0034 -TCGA-02-0037 -TCGA-02-0038 -TCGA-02-0039 -TCGA-02-0043 -TCGA-02-0046 -TCGA-02-0047 -TCGA-02-0048 -TCGA-02-0052 -TCGA-02-0054 -TCGA-02-0055 -TCGA-02-0057 -TCGA-02-0058 -TCGA-02-0060 -TCGA-02-0064 -TCGA-02-0068 -TCGA-02-0069 -TCGA-02-0070 -TCGA-02-0071 -TCGA-02-0074 -TCGA-02-0075 -TCGA-02-0079 -TCGA-02-0080 -TCGA-02-0083 -TCGA-02-0084 -TCGA-02-0085 -TCGA-02-0086 -TCGA-02-0087 -TCGA-02-0089 -TCGA-02-0099 -TCGA-02-0102 -TCGA-02-0104 -TCGA-02-0106 -TCGA-02-0107 -TCGA-02-0111 -TCGA-02-0113 -TCGA-02-0114 -TCGA-02-0115 -TCGA-02-0116 -TCGA-02-0258 -TCGA-02-0260 -TCGA-02-0266 -TCGA-02-0269 -TCGA-02-0271 -TCGA-02-0281 -TCGA-02-0285 -TCGA-02-0289 -TCGA-02-0290 -TCGA-02-0317 -TCGA-02-0321 -TCGA-02-0324 -TCGA-02-0325 -TCGA-02-0326 -TCGA-02-0330 -TCGA-02-0332 -TCGA-02-0333 -TCGA-02-0337 -TCGA-02-0338 -TCGA-02-0339 -TCGA-02-0422 -TCGA-02-0430 -TCGA-02-0432 -TCGA-02-0439 -TCGA-02-0440 -TCGA-02-0446 -TCGA-02-0451 -TCGA-02-0456 -TCGA-06-0122 -TCGA-06-0124 -TCGA-06-0125 -TCGA-06-0126 -TCGA-06-0127 -TCGA-06-0128 -TCGA-06-0129 -TCGA-06-0130 -TCGA-06-0132 -TCGA-06-0133 -TCGA-06-0137 -TCGA-06-0138 -TCGA-06-0139 -TCGA-06-0141 -TCGA-06-0143 -TCGA-06-0145 -TCGA-06-0146 -TCGA-06-0147 -TCGA-06-0148 -TCGA-06-0149 -TCGA-06-0152 -TCGA-06-0154 -TCGA-06-0156 -TCGA-06-0157 -TCGA-06-0158 -TCGA-06-0162 -TCGA-06-0164 -TCGA-06-0166 -TCGA-06-0168 -TCGA-06-0169 -TCGA-06-0171 -TCGA-06-0173 -TCGA-06-0174 -TCGA-06-0175 -TCGA-06-0176 -TCGA-06-0177 -TCGA-06-0178 -TCGA-06-0179 -TCGA-06-0182 -TCGA-06-0184 -TCGA-06-0185 -TCGA-06-0187 -TCGA-06-0188 -TCGA-06-0189 -TCGA-06-0190 -TCGA-06-0194 -TCGA-06-0195 -TCGA-06-0197 -TCGA-06-0201 -TCGA-06-0206 -TCGA-06-0208 -TCGA-06-0209 -TCGA-06-0210 -TCGA-06-0211 -TCGA-06-0213 -TCGA-06-0214 -TCGA-06-0219 -TCGA-06-0221 -TCGA-06-0237 -TCGA-06-0238 -TCGA-06-0241 -TCGA-06-0394 -TCGA-06-0397 -TCGA-06-0402 -TCGA-06-0409 -TCGA-06-0410 -TCGA-06-0412 -TCGA-06-0413 -TCGA-06-0414 -TCGA-06-0644 -TCGA-06-0645 -TCGA-06-0646 -TCGA-06-0648 -TCGA-08-0244 -TCGA-08-0246 -TCGA-08-0344 -TCGA-08-0345 -TCGA-08-0346 -TCGA-08-0347 -TCGA-08-0348 -TCGA-08-0349 -TCGA-08-0350 -TCGA-08-0351 -TCGA-08-0352 -TCGA-08-0353 -TCGA-08-0354 -TCGA-08-0355 -TCGA-08-0356 -TCGA-08-0357 -TCGA-08-0358 -TCGA-08-0359 -TCGA-08-0360 -TCGA-08-0373 -TCGA-08-0375 -TCGA-08-0380 -TCGA-08-0385 -TCGA-08-0386 -TCGA-08-0389 -TCGA-08-0390 -TCGA-08-0392 -TCGA-08-0509 -TCGA-08-0510 -TCGA-08-0511 -TCGA-08-0512 -TCGA-08-0514 -TCGA-08-0516 -TCGA-08-0517 -TCGA-08-0518 -TCGA-08-0520 -TCGA-08-0521 -TCGA-08-0522 -TCGA-08-0524 -TCGA-08-0525 -TCGA-08-0529 -TCGA-08-0531 -TCGA-12-0615 -TCGA-12-0616 -TCGA-12-0618 -TCGA-12-0619 -TCGA-12-0620 diff --git a/core/src/test/resources/applicationContext-dao.xml b/core/src/test/resources/applicationContext-dao.xml deleted file mode 100644 index 0f65a791262..00000000000 --- a/core/src/test/resources/applicationContext-dao.xml +++ /dev/null @@ -1,103 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - file:///#{systemEnvironment['PORTAL_HOME']}/src/main/resources/portal.properties - file:///#{systemEnvironment['PORTAL_HOME']}/src/main/resources/maven.properties - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - mysql - h2 - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/core/src/test/resources/cancer_study.txt b/core/src/test/resources/cancer_study.txt deleted file mode 100644 index bf0f6fc1312..00000000000 --- a/core/src/test/resources/cancer_study.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: test_brca -type_of_cancer: brca -name: Breast Cancer study 1 -description: Breast cancer data. Description to be added. -reference_genome: hg19 \ No newline at end of file diff --git a/core/src/test/resources/cancer_study_bad.txt b/core/src/test/resources/cancer_study_bad.txt deleted file mode 100644 index bd5aa14f1c6..00000000000 --- a/core/src/test/resources/cancer_study_bad.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: test_brca_2 -type_of_cancer: brcaXXX -name: Breast Cancer study 1 -description: Breast cancer data. Description to be added. \ No newline at end of file diff --git a/core/src/test/resources/cancer_study_bad_short_name.txt b/core/src/test/resources/cancer_study_bad_short_name.txt deleted file mode 100644 index bd5aa14f1c6..00000000000 --- a/core/src/test/resources/cancer_study_bad_short_name.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: test_brca_2 -type_of_cancer: brcaXXX -name: Breast Cancer study 1 -description: Breast cancer data. Description to be added. \ No newline at end of file diff --git a/core/src/test/resources/cancers.txt b/core/src/test/resources/cancers.txt deleted file mode 100644 index 9244cb30910..00000000000 --- a/core/src/test/resources/cancers.txt +++ /dev/null @@ -1,22 +0,0 @@ -BLCA Bladder Urothelial Carcinoma Bladder orange Bladder -BRCA Breast invasive carcinoma Breast red Breast -CESC Cervical Squamous Cell Carcinoma Cervical white Cervical -COAD Colon adenocarcinoma Colon green Colorectal -GBM Glioblastoma multiforme Glioblastoma blue GBM -HNSC Head and Neck squamous cell carcinoma Head,Neck pink Head And Neck -KIRC Kidney renal clear cell carcinoma Kidney,Renal,Clear cell black Kidney -KIRP Kidney renal papillary cell carcinoma Kidney,Renal,Papillary gray Kidney -LAML Acute Myeloid Leukemia Leukemia yellow LAML -LGG Brain Lower Grade Glioma Brain Lower Grade darkblue LGG -LIHC Liver hepatocellular carcinoma Liver,Hepatocellular orange Liver -LUAD Lung adenocarcinoma Lung,Adenocarcinoma orange Lung -LUSC Lung squamous cell carcinoma Lung,Squamous orange Lung -OV Ovarian serous cystadenocarcinoma Ovarian,Cystadenocarcinoma orange SHORTNAME -PAAD Pancreatic adenocarcinoma Pancreatic orange SHORTNAME -PRAD Prostate adenocarcinoma Prostate orange SHORTNAME -READ Rectum adenocarcinoma Rectum orange SHORTNAME -SARC Sarcoma Sarcoma orange SHORTNAME -STAD Stomach adenocarcinoma Stomach orange SHORTNAME -THCA Thyroid carcinoma Thyroid orange SHORTNAME -UCEC Uterine Corpus Endometrioid Carcinoma Endometrioid orange SHORTNAME -COADREAD Colon and Rectum adenocarcinoma Colon,Rectum,Colorectal orange SHORTNAME diff --git a/core/src/test/resources/case_list_test.txt b/core/src/test/resources/case_list_test.txt deleted file mode 100644 index 2bce8d3af31..00000000000 --- a/core/src/test/resources/case_list_test.txt +++ /dev/null @@ -1 +0,0 @@ -cancer_study_identifier: gbm stable_id: gbm_6 case_list_name: GBM 6 case_list_description: GBM 6 Case List Description case_list_category: other case_list_ids: TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 \ No newline at end of file diff --git a/core/src/test/resources/cases_excluded_test.txt b/core/src/test/resources/cases_excluded_test.txt deleted file mode 100644 index 50312ef67a2..00000000000 --- a/core/src/test/resources/cases_excluded_test.txt +++ /dev/null @@ -1,19 +0,0 @@ -TCGA-A1-A0SB-01 No -TCGA-A1-A0SD-01 No -TCGA-A1-A0SE-01 No -TCGA-06-0119-01 No -TCGA-06-0121-01 No -TCGA-06-0140-01 No -TCGA-06-0142-01 No -TCGA-06-0150-01 No -TCGA-06-0151-01 No -TCGA-06-0159-01 No -TCGA-06-0160-01 No -TCGA-06-0165-01 No -TCGA-06-0167-01 No -TCGA-06-0216-01 No -TCGA-06-0240-01 No -TCGA-07-0227-01 No -TCGA-07-0249-01 No -TCGA-08-0245-01 No -TCGA-08-0384-01 No \ No newline at end of file diff --git a/core/src/test/resources/clinical_data.txt b/core/src/test/resources/clinical_data.txt deleted file mode 100644 index 88c81ebba78..00000000000 --- a/core/src/test/resources/clinical_data.txt +++ /dev/null @@ -1,494 +0,0 @@ -#PATIENT_ID AGE OS_STATUS PRIMARYTHERAPYOUTCOMESUCCESS PERSONNEOPLASMCANCERSTATUS OS_MONTHS DFS_STATUS DFS_MONTHS PLATINUMFREEINTERVAL (MOS)* PLATINUMSTATUS SAMPLE_ID TUMORSTAGE TUMORGRADE TUMORRESIDUALDISEASE -#Patient Identfier Age at Diagnosis Overall Survival Status Primary Therapy Outcome Success Person Neoplasm Cancer Status Overall Survival (Months) Disease Free Status Disease Free Status (Months) PlatinumFreeInterval (mos)* Platinum Status Sample Identifier Tumor Stage Tumor Grade Tumor Residual Disease -#STRING NUMBER STRING STRING STRING STRING STRING STRING STRING STRING STRING NUMBER STRING STRING -#PATIENT PATIENT PATIENT PATIENT PATIENT PATIENT PATIENT PATIENT PATIENT PATIENT SAMPLE SAMPLE SAMPLE SAMPLE -#1 1 1 1 1 1 1 1 1 1 1 1 1 1 -PATIENT_ID AGE OS_STATUS PRIMARYTHERAPYOUTCOMESUCCESS PERSONNEOPLASMCANCERSTATUS OS_MONTHS DFS_STATUS DFS_MONTHS PLATINUMFREEINTERVAL (MOS)* PLATINUMSTATUS SAMPLE_ID TUMORSTAGE TUMORGRADE TUMORRESIDUALDISEASE -TCGA-A1-A0SB 79.04 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.8 1:Recurred/Progressed 15.05 9.6 Sensitive TCGA-A1-A0SB-01 IIIC G3 1-10 mm -TCGA-A1-A0SC 70.64 1:DECEASED WITH TUMOR 40.89 1:Recurred/Progressed 12.95 6.92 Sensitive TCGA-A1-A0SC-01 IIIC G3 1-10 mm -TCGA-A1-A0SI 55.53 0:LIVING COMPLETE RESPONSE TUMOR FREE 49.02 0:DiseaseFree 49.02 MISSING TCGA-A1-A0SI-01 IIIB G3 No Macroscopic disease -TCGA-A1-A0SE 78.42 1:DECEASED WITH TUMOR 2.03 1:Recurred/Progressed MISSING MISSING TCGA-A1-A0SE-01 IIIC G2 No Macroscopic disease -TCGA-04-1338 78.87 0:LIVING WITH TUMOR 46.49 1:Recurred/Progressed 12.46 5.8 Resistant TCGA-04-1338-01 IIIC G3 1-10 mm -TCGA-04-1341 85.52 0:LIVING 0:DiseaseFree MISSING MISSING TCGA-04-1341-01 G3 -TCGA-04-1342 80.82 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 18.46 1:Recurred/Progressed MISSING MISSING TCGA-04-1342-01 IV G2 >20mm -TCGA-04-1343 72.41 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 11.84 1:Recurred/Progressed MISSING MISSING TCGA-04-1343-01 IV G3 >20mm -TCGA-04-1346 73.6 0:LIVING COMPLETE RESPONSE TUMOR FREE 65.31 0:DiseaseFree 65.31 MISSING TCGA-04-1346-01 IIIC G2 -TCGA-04-1347 81.36 0:LIVING COMPLETE RESPONSE TUMOR FREE 62.89 0:DiseaseFree 62.89 57.4 Sensitive TCGA-04-1347-01 IV G3 No Macroscopic disease -TCGA-04-1348 44.48 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.62 1:Recurred/Progressed 18.82 12.8 Sensitive TCGA-04-1348-01 IIIB G3 1-10 mm -TCGA-04-1349 69.06 1:DECEASED COMPLETE RESPONSE WITH TUMOR 21.64 1:Recurred/Progressed 14.07 1.5 Resistant TCGA-04-1349-01 IV G3 -TCGA-04-1350 46.41 1:DECEASED STABLE DISEASE WITH TUMOR 63.8 1:Recurred/Progressed 3.64 MISSING TCGA-04-1350-01 IIIC G3 >20mm -TCGA-04-1356 62.61 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 49.15 1:Recurred/Progressed 5.11 MISSING TCGA-04-1356-01 IIC G3 -TCGA-04-1357 52.05 0:LIVING 0:DiseaseFree MISSING MISSING TCGA-04-1357-01 IIIB G3 -TCGA-04-1361 57.15 0:LIVING STABLE DISEASE 32.43 1:Recurred/Progressed 30.36 MISSING TCGA-04-1361-01 IIIB G3 No Macroscopic disease -TCGA-04-1362 59.58 1:DECEASED WITH TUMOR 44.2 1:Recurred/Progressed 7.31 1.7 Resistant TCGA-04-1362-01 IIC G3 1-10 mm -TCGA-04-1364 61.08 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 33.61 1:Recurred/Progressed 9.48 3.3 Resistant TCGA-04-1364-01 IIIC G3 1-10 mm -TCGA-04-1365 87.47 0:LIVING COMPLETE RESPONSE WITH TUMOR 76.33 1:Recurred/Progressed 43.54 37.4 Sensitive TCGA-04-1365-01 IIIB G3 -TCGA-04-1367 50.89 0:LIVING COMPLETE RESPONSE TUMOR FREE 71.28 0:DiseaseFree 71.28 64.9 Sensitive TCGA-04-1367-01 IIIC G3 No Macroscopic disease -TCGA-04-1514 45.82 1:DECEASED COMPLETE RESPONSE TUMOR FREE 56.39 1:Recurred/Progressed 40.03 34 Sensitive TCGA-04-1514-01 IIIA G2 No Macroscopic disease -TCGA-04-1517 79.57 1:DECEASED COMPLETE RESPONSE WITH TUMOR 19.93 1:Recurred/Progressed 11.44 6.7 Sensitive TCGA-04-1517-01 IIIC G3 >20mm -TCGA-04-1519 48.39 MISSING MISSING TCGA-04-1519-01 IIIC G3 -TCGA-04-1525 47.86 1:DECEASED COMPLETE RESPONSE WITH TUMOR 38.26 1:Recurred/Progressed 6.95 0.9 Resistant TCGA-04-1525-01 IIIC G3 1-10 mm -TCGA-04-1530 68.53 1:DECEASED COMPLETE RESPONSE WITH TUMOR 118.75 1:Recurred/Progressed 11.48 6.4 Sensitive TCGA-04-1530-01 IIIC G3 1-10 mm -TCGA-04-1536 60.11 1:DECEASED WITH TUMOR 28.98 1:Recurred/Progressed 16.33 8.7 Sensitive TCGA-04-1536-01 IV G3 1-10 mm -TCGA-04-1542 52.78 1:DECEASED COMPLETE RESPONSE WITH TUMOR 83.97 1:Recurred/Progressed 33.93 27.6 Sensitive TCGA-04-1542-01 IIIB G2 1-10 mm -TCGA-04-1638 57.5 1:DECEASED TUMOR FREE 55.25 1:Recurred/Progressed 9.77 3.5 Resistant TCGA-04-1638-01 IV G3 No Macroscopic disease -TCGA-04-1646 60.84 1:DECEASED WITH TUMOR 27.8 1:Recurred/Progressed 16.66 8.8 Sensitive TCGA-04-1646-01 IIIC G3 1-10 mm -TCGA-04-1648 57.84 1:DECEASED 28.56 1:Recurred/Progressed 13.51 8.6 Sensitive TCGA-04-1648-01 IIIC G2 1-10 mm -TCGA-04-1649 74.42 0:LIVING 64.46 1:Recurred/Progressed 54.82 MISSING TCGA-04-1649-01 IIIC G3 1-10 mm -TCGA-04-1651 53.78 1:DECEASED 36.07 1:Recurred/Progressed 32.39 27.6 Sensitive TCGA-04-1651-01 IIIC G3 1-10 mm -TCGA-04-1652 76.98 1:DECEASED COMPLETE RESPONSE WITH TUMOR 31.87 1:Recurred/Progressed 28.95 22.5 Sensitive TCGA-04-1652-01 IIIC G2 -TCGA-04-1654 69.61 1:DECEASED 46.85 1:Recurred/Progressed 25.77 24.8 Sensitive TCGA-04-1654-01 IIIC G2 1-10 mm -TCGA-04-1655 49.28 1:DECEASED 45.21 1:Recurred/Progressed 26.85 22.3 Sensitive TCGA-04-1655-01 IIIB G2 No Macroscopic disease -TCGA-09-0364 80.17 1:DECEASED COMPLETE RESPONSE WITH TUMOR 29.08 1:Recurred/Progressed 12.95 6.8 Sensitive TCGA-09-0364-01 IIC G3 11-20 mm -TCGA-09-0366 56 1:DECEASED STABLE DISEASE WITH TUMOR 57.57 1:Recurred/Progressed 6.2 2.5 Resistant TCGA-09-0366-01 IIIC G3 1-10 mm -TCGA-09-0367 67.05 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 17.9 1:Recurred/Progressed MISSING MISSING TCGA-09-0367-01 IIIC G3 1-10 mm -TCGA-09-0369 56.73 1:DECEASED COMPLETE RESPONSE WITH TUMOR 35.44 1:Recurred/Progressed 8.95 5.8 Resistant TCGA-09-0369-01 IIIC G3 No Macroscopic disease -TCGA-09-1659 51.32 1:DECEASED STABLE DISEASE WITH TUMOR 9.93 1:Recurred/Progressed MISSING MISSING TCGA-09-1659-01 IIIC G3 >20mm -TCGA-09-1661 75.38 1:DECEASED STABLE DISEASE WITH TUMOR 37.41 1:Recurred/Progressed MISSING MISSING TCGA-09-1661-01 IIIC G3 1-10 mm -TCGA-09-1662 58.21 1:DECEASED COMPLETE RESPONSE WITH TUMOR 89.08 1:Recurred/Progressed 34.3 29.7 Sensitive TCGA-09-1662-01 IV G3 1-10 mm -TCGA-09-1665 74 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.48 1:Recurred/Progressed 15.34 8.5 Sensitive TCGA-09-1665-01 IIIC G2 No Macroscopic disease -TCGA-09-1666 57.72 0:LIVING COMPLETE RESPONSE WITH TUMOR 57.41 1:Recurred/Progressed 15.74 10.1 Sensitive TCGA-09-1666-01 IIIC G3 No Macroscopic disease -TCGA-09-1667 61.11 0:LIVING COMPLETE RESPONSE WITH TUMOR 61.7 1:Recurred/Progressed 15.08 11.3 Sensitive TCGA-09-1667-01 IIC G2 No Macroscopic disease -TCGA-09-1668 57.45 0:LIVING COMPLETE RESPONSE WITH TUMOR 55.21 1:Recurred/Progressed MISSING MISSING TCGA-09-1668-01 IIIC G3 -TCGA-09-1669 54.94 0:LIVING COMPLETE RESPONSE WITH TUMOR 30.39 1:Recurred/Progressed MISSING MISSING TCGA-09-1669-01 IIIA G3 No Macroscopic disease -TCGA-09-1670 58.04 0:LIVING COMPLETE RESPONSE WITH TUMOR 16.69 1:Recurred/Progressed 16.69 12.1 Sensitive TCGA-09-1670-01 IIIA G3 No Macroscopic disease -TCGA-09-1673 50.96 0:LIVING WITH TUMOR 3.02 1:Recurred/Progressed MISSING MISSING TCGA-09-1673-01 IV G3 >20mm -TCGA-09-1674 79.12 0:LIVING COMPLETE RESPONSE WITH TUMOR 8.52 1:Recurred/Progressed MISSING MISSING TCGA-09-1674-01 IIIC G3 1-10 mm -TCGA-09-2044 77.34 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.1 0:DiseaseFree 6.1 1.07 Tooearly TCGA-09-2044-01 IIB G3 No Macroscopic disease -TCGA-09-2045 50.1 1:DECEASED STABLE DISEASE WITH TUMOR 35.05 1:Recurred/Progressed 20.69 12.72 Sensitive TCGA-09-2045-01 IV G2 1-10 mm -TCGA-09-2048 63.13 1:DECEASED STABLE DISEASE WITH TUMOR 4.49 1:Recurred/Progressed MISSING MISSING TCGA-09-2048-01 IIIC G3 1-10 mm -TCGA-09-2049 64.14 0:LIVING COMPLETE RESPONSE WITH TUMOR 112.07 1:Recurred/Progressed 31.21 25.51 Sensitive TCGA-09-2049-01 IIIC G3 >20mm -TCGA-09-2050 65.72 0:LIVING COMPLETE RESPONSE TUMOR FREE 70.92 0:DiseaseFree 70.92 67.28 Sensitive TCGA-09-2050-01 IIA G2 No Macroscopic disease -TCGA-09-2051 42.88 0:LIVING COMPLETE RESPONSE TUMOR FREE 62.92 1:Recurred/Progressed 19.11 13.95 Sensitive TCGA-09-2051-01 IIIC G3 No Macroscopic disease -TCGA-09-2053 72.42 0:LIVING COMPLETE RESPONSE TUMOR FREE 39.64 0:DiseaseFree 39.64 35.3 Sensitive TCGA-09-2053-01 IIIC G3 No Macroscopic disease -TCGA-09-2054 58.32 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 20.85 1:Recurred/Progressed MISSING MISSING TCGA-09-2054-01 IIIC G3 1-10 mm -TCGA-09-2056 62.64 0:LIVING COMPLETE RESPONSE TUMOR FREE 12.43 0:DiseaseFree 12.43 7.6 Sensitive TCGA-09-2056-01 IIIC G3 No Macroscopic disease -TCGA-10-0926 63.85 1:DECEASED COMPLETE RESPONSE WITH TUMOR 25.84 1:Recurred/Progressed 9.41 4.8 Resistant TCGA-10-0926-01 IIIC G3 11-20 mm -TCGA-10-0927 65.7 1:DECEASED COMPLETE RESPONSE WITH TUMOR 81.64 1:Recurred/Progressed 32.82 28.9 Sensitive TCGA-10-0927-01 IIIC G2 1-10 mm -TCGA-10-0928 71.41 1:DECEASED WITH TUMOR 18.43 1:Recurred/Progressed MISSING MISSING TCGA-10-0928-01 IIIC G3 1-10 mm -TCGA-10-0930 70.51 1:DECEASED COMPLETE RESPONSE WITH TUMOR 34.1 1:Recurred/Progressed 22.3 18.2 Sensitive TCGA-10-0930-01 IIIC G3 1-10 mm -TCGA-10-0931 44.55 1:DECEASED COMPLETE RESPONSE WITH TUMOR 32.79 1:Recurred/Progressed 9.84 5.7 Resistant TCGA-10-0931-01 IIIC G3 1-10 mm -TCGA-10-0933 77.9 1:DECEASED COMPLETE RESPONSE WITH TUMOR 14.62 1:Recurred/Progressed 11.67 7.3 Sensitive TCGA-10-0933-01 IIIC G3 No Macroscopic disease -TCGA-10-0934 50.96 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 6.66 1:Recurred/Progressed 3.61 1.8 Resistant TCGA-10-0934-01 IIIC G3 1-10 mm -TCGA-10-0935 68.76 1:DECEASED WITH TUMOR 35.31 1:Recurred/Progressed MISSING MISSING TCGA-10-0935-01 IIIC G3 1-10 mm -TCGA-10-0936 69.74 1:DECEASED PARTIAL RESPONSE WITH TUMOR 36.82 1:Recurred/Progressed MISSING MISSING TCGA-10-0936-01 IIIC G3 >20mm -TCGA-10-0937 44.44 1:DECEASED COMPLETE RESPONSE WITH TUMOR 19.93 1:Recurred/Progressed 7.7 2.9 Resistant TCGA-10-0937-01 IIIC G3 1-10 mm -TCGA-10-0938 80.98 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 20.85 1:Recurred/Progressed 11.87 5.6 Resistant TCGA-10-0938-01 IIIC G3 >20mm -TCGA-13-0714 55.1 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 6.1 1:Recurred/Progressed 3.51 MISSING TCGA-13-0714-01 IV G3 1-10 mm -TCGA-13-0717 54.91 1:DECEASED COMPLETE RESPONSE WITH TUMOR 24.52 1:Recurred/Progressed 9.64 3.8 Resistant TCGA-13-0717-01 IIIC G3 >20mm -TCGA-13-0720 48.76 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.43 1:Recurred/Progressed 9.57 3.7 Resistant TCGA-13-0720-01 IIIC G3 1-10 mm -TCGA-13-0723 63.27 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 39.48 1:Recurred/Progressed 6.89 0.3 Resistant TCGA-13-0723-01 IIIC G3 >20mm -TCGA-13-0724 72.26 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 1.57 1:Recurred/Progressed 1.57 0.3 Resistant TCGA-13-0724-01 IV G3 1-10 mm -TCGA-13-0725 44.09 1:DECEASED COMPLETE RESPONSE WITH TUMOR 12.1 1:Recurred/Progressed 5.97 -0.8 Resistant TCGA-13-0725-01 IIIC G3 1-10 mm -TCGA-13-0726 55.16 1:DECEASED COMPLETE RESPONSE WITH TUMOR 31.08 1:Recurred/Progressed 12.85 7.3 Sensitive TCGA-13-0726-01 IIIC 1-10 mm -TCGA-13-0727 71.74 1:DECEASED COMPLETE RESPONSE WITH TUMOR 15.15 1:Recurred/Progressed 8.3 4.3 Resistant TCGA-13-0727-01 IIIC G3 1-10 mm -TCGA-13-0730 71.55 1:DECEASED WITH TUMOR 16.82 1:Recurred/Progressed MISSING MISSING TCGA-13-0730-01 IIIC G3 >20mm -TCGA-13-0751 44.67 1:DECEASED COMPLETE RESPONSE WITH TUMOR 55.02 1:Recurred/Progressed 21.41 12.7 Sensitive TCGA-13-0751-01 IIIC 1-10 mm -TCGA-13-0755 75.17 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 2.46 1:Recurred/Progressed 1.11 -0.2 Resistant TCGA-13-0755-01 IV G3 1-10 mm -TCGA-13-0757 71.23 1:DECEASED COMPLETE RESPONSE WITH TUMOR 11.15 1:Recurred/Progressed 9.61 0.8 Resistant TCGA-13-0757-01 IIIC G3 1-10 mm -TCGA-13-0760 63.23 1:DECEASED 10.1 MISSING MISSING MISSING TCGA-13-0760-01 IV G3 No Macroscopic disease -TCGA-13-0761 51.22 0:LIVING COMPLETE RESPONSE WITH TUMOR 33.97 1:Recurred/Progressed 13.87 6.7 Sensitive TCGA-13-0761-01 IV G3 No Macroscopic disease -TCGA-13-0762 65.64 0:LIVING COMPLETE RESPONSE TUMOR FREE 32.16 0:DiseaseFree 32.16 27.6 Sensitive TCGA-13-0762-01 IIIC G3 No Macroscopic disease -TCGA-13-0764 63.01 0:LIVING PARTIAL RESPONSE WITH TUMOR 29.84 1:Recurred/Progressed 7.8 3.6 Resistant TCGA-13-0764-01 IV G3 1-10 mm -TCGA-13-0765 50.89 0:LIVING COMPLETE RESPONSE WITH TUMOR 28.49 1:Recurred/Progressed 21.9 16.6 Sensitive TCGA-13-0765-01 IIIC G3 1-10 mm -TCGA-13-0766 42.66 0:LIVING COMPLETE RESPONSE WITH TUMOR 21.34 1:Recurred/Progressed 20.59 14.6 Sensitive TCGA-13-0766-01 IIIC G3 1-10 mm -TCGA-13-0768 73.97 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.39 0:DiseaseFree 8.39 3.6 Tooearly TCGA-13-0768-01 IIIC G3 1-10 mm -TCGA-13-0791 58.57 0:LIVING COMPLETE RESPONSE WITH TUMOR 38.82 1:Recurred/Progressed 9.21 4.6 Resistant TCGA-13-0791-01 IIIC G3 No Macroscopic disease -TCGA-13-0792 40.35 0:LIVING COMPLETE RESPONSE WITH TUMOR 36.62 1:Recurred/Progressed 26.75 21.7 Sensitive TCGA-13-0792-01 IIIC G3 No Macroscopic disease -TCGA-13-0793 40.29 0:LIVING COMPLETE RESPONSE WITH TUMOR 28.62 1:Recurred/Progressed 11.51 6.3 Sensitive TCGA-13-0793-01 IV G3 1-10 mm -TCGA-13-0794 60.12 0:LIVING COMPLETE RESPONSE WITH TUMOR 30.26 1:Recurred/Progressed 27.7 23.4 Sensitive TCGA-13-0794-01 IIIC G3 1-10 mm -TCGA-13-0795 66.94 0:LIVING COMPLETE RESPONSE WITH TUMOR 18.56 1:Recurred/Progressed 9.7 4 Resistant TCGA-13-0795-01 IIIC G3 >20mm -TCGA-13-0797 49.45 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.69 0:DiseaseFree 8.69 3.9 Tooearly TCGA-13-0797-01 IIIC G3 1-10 mm -TCGA-13-0799 44.3 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.77 0:DiseaseFree 7.77 3 Tooearly TCGA-13-0799-01 IIIC G3 No Macroscopic disease -TCGA-13-0800 52.29 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.1 0:DiseaseFree 8.1 3.5 Tooearly TCGA-13-0800-01 IIIC G3 No Macroscopic disease -TCGA-13-0801 46.06 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.26 0:DiseaseFree 8.26 3.5 Tooearly TCGA-13-0801-01 IIIC G3 No Macroscopic disease -TCGA-13-0802 79.66 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.16 0:DiseaseFree 8.16 2 Tooearly TCGA-13-0802-01 IIIC G3 No Macroscopic disease -TCGA-13-0803 81.33 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.7 1:Recurred/Progressed 11.02 3.7 Resistant TCGA-13-0803-01 IIIC G3 No Macroscopic disease -TCGA-13-0804 74.03 1:DECEASED COMPLETE RESPONSE WITH TUMOR 35.18 1:Recurred/Progressed 10.79 5.5 Resistant TCGA-13-0804-01 IIIC G3 1-10 mm -TCGA-13-0805 57.57 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 35.21 1:Recurred/Progressed 5.77 0.9 Resistant TCGA-13-0805-01 IIIC G3 1-10 mm -TCGA-13-0807 54.49 1:DECEASED 13.57 MISSING MISSING MISSING TCGA-13-0807-01 IIIC G3 >20mm -TCGA-13-0883 61.36 1:DECEASED COMPLETE RESPONSE WITH TUMOR 68.72 1:Recurred/Progressed 26.82 15.4 Sensitive TCGA-13-0883-01 IIIC G3 1-10 mm -TCGA-13-0884 39.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 105.31 1:Recurred/Progressed 39.44 31 Sensitive TCGA-13-0884-01 IIIC G3 1-10 mm -TCGA-13-0885 70.58 0:LIVING COMPLETE RESPONSE 91.15 0:DiseaseFree 91.15 84.4 Sensitive TCGA-13-0885-01 IIIC G3 11-20 mm -TCGA-13-0886 67.73 0:LIVING COMPLETE RESPONSE TUMOR FREE 74.07 0:DiseaseFree 74.07 65.6 Sensitive TCGA-13-0886-01 IIIC G3 1-10 mm -TCGA-13-0887 42.93 1:DECEASED COMPLETE RESPONSE WITH TUMOR 66.46 1:Recurred/Progressed 16.82 8.1 Sensitive TCGA-13-0887-01 IIIC G3 1-10 mm -TCGA-13-0888 78.08 0:LIVING PARTIAL RESPONSE TUMOR FREE 70.2 0:DiseaseFree 70.2 62.8 Sensitive TCGA-13-0888-01 IIIC G3 No Macroscopic disease -TCGA-13-0889 75.82 0:LIVING COMPLETE RESPONSE TUMOR FREE 61.64 0:DiseaseFree 61.64 56.5 Sensitive TCGA-13-0889-01 IV 1-10 mm -TCGA-13-0890 56.9 0:LIVING COMPLETE RESPONSE TUMOR FREE 67.8 0:DiseaseFree 67.8 59.97 Sensitive TCGA-13-0890-01 IIIC G3 1-10 mm -TCGA-13-0891 73.74 0:LIVING COMPLETE RESPONSE WITH TUMOR 67.84 1:Recurred/Progressed 23.97 19 Sensitive TCGA-13-0891-01 IV G3 No Macroscopic disease -TCGA-13-0893 48.31 1:DECEASED PARTIAL RESPONSE WITH TUMOR 41.31 1:Recurred/Progressed 13.18 5.8 Resistant TCGA-13-0893-01 IIIC G3 11-20 mm -TCGA-13-0894 53.33 1:DECEASED COMPLETE RESPONSE WITH TUMOR 49.48 1:Recurred/Progressed 18.52 7.7 Sensitive TCGA-13-0894-01 IIIC G3 1-10 mm -TCGA-13-0897 54.5 0:LIVING COMPLETE RESPONSE WITH TUMOR 57.31 1:Recurred/Progressed 18.13 13.6 Sensitive TCGA-13-0897-01 IIIC G3 1-10 mm -TCGA-13-0899 60.36 0:LIVING COMPLETE RESPONSE WITH TUMOR 56 1:Recurred/Progressed 17.93 13.8 Sensitive TCGA-13-0899-01 IIIC G3 1-10 mm -TCGA-13-0900 59.47 0:LIVING COMPLETE RESPONSE TUMOR FREE 56.59 0:DiseaseFree 56.59 51.7 Sensitive TCGA-13-0900-01 IIIC G3 -TCGA-13-0901 42.01 0:LIVING COMPLETE RESPONSE WITH TUMOR 19.31 1:Recurred/Progressed 12.79 7.4 Sensitive TCGA-13-0901-01 IIIC G3 >20mm -TCGA-13-0903 43.03 0:LIVING COMPLETE RESPONSE WITH TUMOR 47.25 1:Recurred/Progressed MISSING MISSING TCGA-13-0903-01 IV G3 No Macroscopic disease -TCGA-13-0904 63.86 0:LIVING PARTIAL RESPONSE WITH TUMOR 47.18 1:Recurred/Progressed 9.77 2.6 Resistant TCGA-13-0904-01 IIIC G3 >20mm -TCGA-13-0905 51.39 0:LIVING COMPLETE RESPONSE TUMOR FREE 47.7 0:DiseaseFree 47.7 40.5 Sensitive TCGA-13-0905-01 IIIC G3 -TCGA-13-0906 50.36 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.82 0:DiseaseFree 44.82 40.1 Sensitive TCGA-13-0906-01 IIIC G3 1-10 mm -TCGA-13-0908 58.69 0:LIVING COMPLETE RESPONSE WITH TUMOR 44.72 1:Recurred/Progressed 18.1 10.1 Sensitive TCGA-13-0908-01 IV G3 1-10 mm -TCGA-13-0910 58.91 0:LIVING COMPLETE RESPONSE TUMOR FREE 36.03 0:DiseaseFree 36.03 27.6 Sensitive TCGA-13-0910-01 IIIC G3 1-10 mm -TCGA-13-0911 55.57 0:LIVING PARTIAL RESPONSE WITH TUMOR 27.41 1:Recurred/Progressed 8.92 3 Resistant TCGA-13-0911-01 IV G3 1-10 mm -TCGA-13-0912 58.7 0:LIVING COMPLETE RESPONSE WITH TUMOR 33.97 1:Recurred/Progressed 15.34 10.6 Sensitive TCGA-13-0912-01 IIIC G3 No Macroscopic disease -TCGA-13-0913 53.62 0:LIVING COMPLETE RESPONSE WITH TUMOR 29.9 1:Recurred/Progressed 28.56 23.4 Sensitive TCGA-13-0913-01 IIIC G3 No Macroscopic disease -TCGA-13-0916 49.83 0:LIVING COMPLETE RESPONSE TUMOR FREE 21.08 0:DiseaseFree 21.08 15.8 Sensitive TCGA-13-0916-01 IIIC G3 No Macroscopic disease -TCGA-13-0919 52.98 0:LIVING COMPLETE RESPONSE TUMOR FREE 14.85 0:DiseaseFree 14.85 9.6 Sensitive TCGA-13-0919-01 IIIC G3 No Macroscopic disease -TCGA-13-0920 65.93 0:LIVING COMPLETE RESPONSE WITH TUMOR 13.77 1:Recurred/Progressed 9.74 4.8 Resistant TCGA-13-0920-01 IIIC G3 1-10 mm -TCGA-13-0921 72.89 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.62 0:DiseaseFree 4.62 0 Tooearly TCGA-13-0921-01 IIIC G3 No Macroscopic disease -TCGA-13-0923 74.19 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.39 0:DiseaseFree 6.39 1.4 Tooearly TCGA-13-0923-01 IIIC G3 No Macroscopic disease -TCGA-13-0924 45.7 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.67 0:DiseaseFree 5.67 1.4 Tooearly TCGA-13-0924-01 IV G3 1-10 mm -TCGA-13-1403 48.48 0:LIVING COMPLETE RESPONSE TUMOR FREE 10.85 0:DiseaseFree 10.85 6.2 Sensitive TCGA-13-1403-01 IIIC G3 -TCGA-13-1404 48.72 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.59 0:DiseaseFree 6.59 -2.5 Tooearly TCGA-13-1404-01 IIIC G3 1-10 mm -TCGA-13-1405 49.91 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.34 0:DiseaseFree 7.34 2.5 Tooearly TCGA-13-1405-01 IV G3 1-10 mm -TCGA-13-1407 51.77 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.03 0:DiseaseFree 6.03 0 Tooearly TCGA-13-1407-01 IIIC G3 -TCGA-13-1408 59.27 0:LIVING PARTIAL RESPONSE WITH TUMOR 5.9 1:Recurred/Progressed MISSING MISSING TCGA-13-1408-01 IIIC G3 >20mm -TCGA-13-1409 73.63 0:LIVING WITH TUMOR 5.54 1:Recurred/Progressed MISSING MISSING TCGA-13-1409-01 IIIC G3 1-10 mm -TCGA-13-1410 57.4 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.69 0:DiseaseFree 4.69 0.5 Tooearly TCGA-13-1410-01 IV -TCGA-13-1411 81.84 0:LIVING PARTIAL RESPONSE WITH TUMOR 4.2 1:Recurred/Progressed MISSING MISSING TCGA-13-1411-01 IIIC G3 >20mm -TCGA-13-1412 41.42 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.31 0:DiseaseFree 5.31 -1.2 Tooearly TCGA-13-1412-01 IV G3 1-10 mm -TCGA-13-1477 49.68 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 53.67 1:Recurred/Progressed 6.89 1 Resistant TCGA-13-1477-01 IV G2 1-10 mm -TCGA-13-1481 76.43 1:DECEASED COMPLETE RESPONSE TUMOR FREE 86.82 0:DiseaseFree 86.82 79.1 Sensitive TCGA-13-1481-01 IIIC G2 1-10 mm -TCGA-13-1482 52.61 1:DECEASED PARTIAL RESPONSE WITH TUMOR 60.69 1:Recurred/Progressed 18.89 14.8 Sensitive TCGA-13-1482-01 IV G2 >20mm -TCGA-13-1483 61.28 1:DECEASED PARTIAL RESPONSE WITH TUMOR 28.49 1:Recurred/Progressed 8.89 1.9 Resistant TCGA-13-1483-01 IIIC G3 >20mm -TCGA-13-1484 62.34 0:LIVING COMPLETE RESPONSE WITH TUMOR 95.9 1:Recurred/Progressed 14.39 10.1 Sensitive TCGA-13-1484-01 IIIC G3 -TCGA-13-1485 48.36 1:DECEASED PARTIAL RESPONSE WITH TUMOR 20.3 1:Recurred/Progressed 5.25 0.7 Resistant TCGA-13-1485-01 IV G2 1-10 mm -TCGA-13-1487 74.45 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.33 1:Recurred/Progressed 13.51 6.7 Sensitive TCGA-13-1487-01 IV -TCGA-13-1488 59.52 1:DECEASED COMPLETE RESPONSE WITH TUMOR 70.62 1:Recurred/Progressed 11.51 6 Sensitive TCGA-13-1488-01 IV G3 11-20 mm -TCGA-13-1489 70.6 0:LIVING COMPLETE RESPONSE WITH TUMOR 82.66 1:Recurred/Progressed 26.43 17.5 Sensitive TCGA-13-1489-01 IIIC G2 -TCGA-13-1491 55.52 1:DECEASED PARTIAL RESPONSE WITH TUMOR 52.2 1:Recurred/Progressed 16.56 11.7 Sensitive TCGA-13-1491-01 IIIC G3 -TCGA-13-1492 66.7 0:LIVING COMPLETE RESPONSE TUMOR FREE 72.89 0:DiseaseFree 72.89 65.4 Sensitive TCGA-13-1492-01 IIIC G3 -TCGA-13-1494 43.94 0:LIVING COMPLETE RESPONSE WITH TUMOR 36.59 1:Recurred/Progressed 21.25 16.8 Sensitive TCGA-13-1494-01 IV G3 -TCGA-13-1495 60.4 0:LIVING COMPLETE RESPONSE WITH TUMOR 49.08 1:Recurred/Progressed 32.03 27.5 Sensitive TCGA-13-1495-01 IIIC G2 1-10 mm -TCGA-13-1496 65.8 1:DECEASED 3.41 MISSING MISSING 3.2 MISSING TCGA-13-1496-01 IIIC G3 >20mm -TCGA-13-1497 48.02 0:LIVING COMPLETE RESPONSE WITH TUMOR 54.16 1:Recurred/Progressed 26.66 20.6 Sensitive TCGA-13-1497-01 IIIC G3 -TCGA-13-1498 73.48 0:LIVING PARTIAL RESPONSE WITH TUMOR 37.51 1:Recurred/Progressed 17.48 10.4 Sensitive TCGA-13-1498-01 IIIC G3 >20mm -TCGA-13-1499 56.71 0:LIVING COMPLETE RESPONSE WITH TUMOR 37.28 1:Recurred/Progressed 18.1 13 Sensitive TCGA-13-1499-01 IIIC G3 -TCGA-13-1500 71.7 1:DECEASED PARTIAL RESPONSE WITH TUMOR 13.93 1:Recurred/Progressed 8.3 1 Resistant TCGA-13-1500-01 IIIC G3 11-20 mm -TCGA-13-1501 50.49 0:LIVING PARTIAL RESPONSE WITH TUMOR 31.57 1:Recurred/Progressed 11.67 6.9 Sensitive TCGA-13-1501-01 IV G3 >20mm -TCGA-13-1504 68.52 0:LIVING COMPLETE RESPONSE TUMOR FREE 16.52 0:DiseaseFree 16.52 7.3 Sensitive TCGA-13-1504-01 IIIC G3 -TCGA-13-1505 63.67 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.2 0:DiseaseFree 4.2 -1.37 Tooearly TCGA-13-1505-01 IIIC G3 1-10 mm -TCGA-13-1506 45.84 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.39 0:DiseaseFree 4.39 -1.8 Tooearly TCGA-13-1506-01 IIIC G3 -TCGA-13-1507 77.93 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.75 0:DiseaseFree 4.75 -0.5 Tooearly TCGA-13-1507-01 IIIC G3 1-10 mm -TCGA-13-1509 64.34 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.07 0:DiseaseFree 4.07 0 Tooearly TCGA-13-1509-01 IV G3 1-10 mm -TCGA-13-1510 62.21 0:LIVING TUMOR FREE 2.56 0:DiseaseFree 2.56 -3.21 Tooearly TCGA-13-1510-01 IIIC G3 No Macroscopic disease -TCGA-13-1511 52.77 0:LIVING PARTIAL RESPONSE WITH TUMOR 3.74 1:Recurred/Progressed MISSING MISSING TCGA-13-1511-01 IV G3 >20mm -TCGA-13-1512 49.75 0:LIVING 2.33 0:DiseaseFree 2.33 0 Tooearly TCGA-13-1512-01 IIIC G3 No Macroscopic disease -TCGA-13-2060 51.05 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.56 0:DiseaseFree 8.56 3.82 Tooearly TCGA-13-2060-01 IV G3 1-10 mm -TCGA-20-0987 61.2 1:DECEASED WITH TUMOR 21.31 1:Recurred/Progressed 12.82 MISSING TCGA-20-0987-01 IIIC G3 1-10 mm -TCGA-20-0990 74.59 0:LIVING WITH TUMOR 24.07 1:Recurred/Progressed 26.72 20.8 Sensitive TCGA-20-0990-01 IIIC G3 -TCGA-20-0991 78.69 0:LIVING COMPLETE RESPONSE TUMOR FREE 25.25 0:DiseaseFree 25.25 MISSING TCGA-20-0991-01 IIB G3 No Macroscopic disease -TCGA-20-1682 56.39 0:LIVING COMPLETE RESPONSE TUMOR FREE 27.41 0:DiseaseFree 27.41 22.8 Sensitive TCGA-20-1682-01 IIIC 11-20 mm -TCGA-20-1683 65.77 0:LIVING STABLE DISEASE TUMOR FREE 25.31 1:Recurred/Progressed 20.26 15.9 Sensitive TCGA-20-1683-01 IIIC G3 No Macroscopic disease -TCGA-20-1684 51.38 0:LIVING COMPLETE RESPONSE TUMOR FREE 19.02 0:DiseaseFree 19.02 15.1 Sensitive TCGA-20-1684-01 IIIC G3 1-10 mm -TCGA-20-1685 45.88 0:LIVING COMPLETE RESPONSE TUMOR FREE 16.62 0:DiseaseFree 16.62 12 Sensitive TCGA-20-1685-01 IIIC G3 1-10 mm -TCGA-20-1686 75.58 0:LIVING COMPLETE RESPONSE TUMOR FREE 2.92 0:DiseaseFree 2.92 -1.4 Tooearly TCGA-20-1686-01 IIIC G3 No Macroscopic disease -TCGA-20-1687 46.47 0:LIVING COMPLETE RESPONSE TUMOR FREE 2.62 0:DiseaseFree 2.62 -2.9 Tooearly TCGA-20-1687-01 IV G3 No Macroscopic disease -TCGA-23-1021 45.16 1:DECEASED PARTIAL RESPONSE WITH TUMOR 47.41 1:Recurred/Progressed MISSING MISSING TCGA-23-1021-01 IV G3 >20mm -TCGA-23-1022 67.94 1:DECEASED COMPLETE RESPONSE WITH TUMOR 49.54 1:Recurred/Progressed 14.75 9.5 Sensitive TCGA-23-1022-01 IIIC G3 1-10 mm -TCGA-23-1023 65.27 0:LIVING COMPLETE RESPONSE WITH TUMOR 40.43 1:Recurred/Progressed 16.07 12.07 Sensitive TCGA-23-1023-01 IIIC G3 1-10 mm -TCGA-23-1024 52.19 0:LIVING COMPLETE RESPONSE TUMOR FREE 15.34 0:DiseaseFree 15.34 5.4 Tooearly TCGA-23-1024-01 IV G3 1-10 mm -TCGA-23-1026 45.05 0:LIVING COMPLETE RESPONSE WITH TUMOR 26.75 1:Recurred/Progressed 26.13 22.6 Sensitive TCGA-23-1026-01 IIIC G3 1-10 mm -TCGA-23-1027 48.19 1:DECEASED PROGRESSIVE DISEASE 31.97 1:Recurred/Progressed 3.74 -0.6 Resistant TCGA-23-1027-01 IIIC G3 1-10 mm -TCGA-23-1028 43.88 0:LIVING COMPLETE RESPONSE WITH TUMOR 49.28 1:Recurred/Progressed 4.36 0.8 Resistant TCGA-23-1028-01 IIIC G3 1-10 mm -TCGA-23-1029 46.27 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.79 0:DiseaseFree 8.79 6.2 Sensitive TCGA-23-1029-01 IIIC G3 1-10 mm -TCGA-23-1030 64.15 0:LIVING COMPLETE RESPONSE TUMOR FREE 29.02 1:Recurred/Progressed 17.8 12.5 Sensitive TCGA-23-1030-01 IIIC G3 1-10 mm -TCGA-23-1031 60.89 1:DECEASED PARTIAL RESPONSE WITH TUMOR 18.82 1:Recurred/Progressed MISSING MISSING TCGA-23-1031-01 IV G3 1-10 mm -TCGA-23-1032 73.19 1:DECEASED WITH TUMOR 2.75 1:Recurred/Progressed MISSING MISSING TCGA-23-1032-01 IV G3 1-10 mm -TCGA-23-1107 59.07 1:DECEASED WITH TUMOR 0.3 1:Recurred/Progressed MISSING MISSING TCGA-23-1107-01 IV G3 >20mm -TCGA-23-1109 63.02 1:DECEASED PARTIAL RESPONSE WITH TUMOR 51.21 1:Recurred/Progressed 32.36 MISSING TCGA-23-1109-01 IIIC G3 1-10 mm -TCGA-23-1110 42.15 0:LIVING COMPLETE RESPONSE TUMOR FREE 54.36 1:Recurred/Progressed 10.69 7.1 Sensitive TCGA-23-1110-01 IIIC G3 No Macroscopic disease -TCGA-23-1111 63.48 0:LIVING 3.21 0:DiseaseFree 3.21 -1 Tooearly TCGA-23-1111-01 IIIC G3 >20mm -TCGA-23-1113 48.74 1:DECEASED PARTIAL RESPONSE WITH TUMOR 31.11 1:Recurred/Progressed MISSING MISSING TCGA-23-1113-01 IV G3 1-10 mm -TCGA-23-1114 55.92 1:DECEASED COMPLETE RESPONSE WITH TUMOR 68.49 1:Recurred/Progressed 20.79 14.8 Sensitive TCGA-23-1114-01 IIIC G3 No Macroscopic disease -TCGA-23-1116 83.46 0:LIVING 4.56 0:DiseaseFree 4.56 -1.6 Tooearly TCGA-23-1116-01 IIIC G3 >20mm -TCGA-23-1117 42.99 1:DECEASED COMPLETE RESPONSE WITH TUMOR 33.21 1:Recurred/Progressed 13.7 4.1 Resistant TCGA-23-1117-01 IIIC G3 1-10 mm -TCGA-23-1118 45.12 0:LIVING COMPLETE RESPONSE TUMOR FREE 85.77 0:DiseaseFree 85.77 79.5 Sensitive TCGA-23-1118-01 IIIC G3 >20mm -TCGA-23-1119 64.89 0:LIVING COMPLETE RESPONSE TUMOR FREE 129.61 1:Recurred/Progressed 110.75 106.9 Sensitive TCGA-23-1119-01 IIIC G3 1-10 mm -TCGA-23-1120 60.68 0:LIVING 4.26 0:DiseaseFree 4.26 -0.5 Tooearly TCGA-23-1120-01 IIIC G3 1-10 mm -TCGA-23-1121 52.01 0:LIVING 6.36 0:DiseaseFree 6.36 0 Tooearly TCGA-23-1121-01 IIIC G3 >20mm -TCGA-23-1122 53.53 1:DECEASED COMPLETE RESPONSE WITH TUMOR 38.98 1:Recurred/Progressed 14.66 6.7 Sensitive TCGA-23-1122-01 IIIC G3 1-10 mm -TCGA-23-1123 59.04 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 33.38 1:Recurred/Progressed MISSING MISSING TCGA-23-1123-01 IIIC G3 11-20 mm -TCGA-23-1124 63.03 1:DECEASED COMPLETE RESPONSE WITH TUMOR 57.97 1:Recurred/Progressed 21.02 14.7 Sensitive TCGA-23-1124-01 IIIC G3 No Macroscopic disease -TCGA-23-1809 63.32 0:LIVING 0.52 0:DiseaseFree 0.52 -3.1 Tooearly TCGA-23-1809-01 IIC G3 1-10 mm -TCGA-23-2072 58.97 1:DECEASED COMPLETE RESPONSE WITH TUMOR 24.89 1:Recurred/Progressed 15.61 10.6 Sensitive TCGA-23-2072-01 IV G3 >20mm -TCGA-23-2077 45.35 0:LIVING COMPLETE RESPONSE TUMOR FREE 115.57 1:Recurred/Progressed 40.39 35.4 Sensitive TCGA-23-2077-01 IIIC G3 No Macroscopic disease -TCGA-23-2078 66.36 0:LIVING COMPLETE RESPONSE TUMOR FREE 87.25 0:DiseaseFree 87.25 82.6 Sensitive TCGA-23-2078-01 IIIC G3 No Macroscopic disease -TCGA-23-2079 46.91 0:LIVING COMPLETE RESPONSE TUMOR FREE 91.41 1:Recurred/Progressed 9.28 5.2 Resistant TCGA-23-2079-01 IIIC G3 No Macroscopic disease -TCGA-23-2081 49.76 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 76.79 1:Recurred/Progressed MISSING MISSING TCGA-23-2081-01 IV G3 1-10 mm -TCGA-23-2084 45.19 1:DECEASED COMPLETE RESPONSE WITH TUMOR 49.7 1:Recurred/Progressed 20.3 15.2 Sensitive TCGA-23-2084-01 IV G3 No Macroscopic disease -TCGA-24-0966 78.14 0:LIVING STABLE DISEASE WITH TUMOR 7.8 1:Recurred/Progressed MISSING MISSING TCGA-24-0966-01 IIIC G3 >20mm -TCGA-24-0968 59.34 1:DECEASED PARTIAL RESPONSE WITH TUMOR 19.77 1:Recurred/Progressed 17.7 13.57 Sensitive TCGA-24-0968-01 IIIC G3 1-10 mm -TCGA-24-0970 63.77 1:DECEASED PARTIAL RESPONSE WITH TUMOR 11.61 1:Recurred/Progressed 9.18 -1 Resistant TCGA-24-0970-01 IIIC G3 >20mm -TCGA-24-0975 58.68 1:DECEASED PARTIAL RESPONSE WITH TUMOR 21.74 1:Recurred/Progressed 9.87 MISSING TCGA-24-0975-01 IIIC G3 1-10 mm -TCGA-24-0979 53.68 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.44 1:Recurred/Progressed 14.03 8 Sensitive TCGA-24-0979-01 IV G3 >20mm -TCGA-24-0980 53.64 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 7.64 1:Recurred/Progressed 4.75 -1.1 Resistant TCGA-24-0980-01 IIIC G3 >20mm -TCGA-24-0982 77.26 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.26 1:Recurred/Progressed 4.98 0.85 Resistant TCGA-24-0982-01 IIIC G3 1-10 mm -TCGA-24-1103 50.91 1:DECEASED COMPLETE RESPONSE WITH TUMOR 53.93 1:Recurred/Progressed 22.2 17.96 Sensitive TCGA-24-1103-01 IIIC G3 1-10 mm -TCGA-24-1104 56.22 1:DECEASED COMPLETE RESPONSE WITH TUMOR 63.57 1:Recurred/Progressed 31.61 25.61 Sensitive TCGA-24-1104-01 IV G3 >20mm -TCGA-24-1105 36.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 47.28 1:Recurred/Progressed 15.41 9.48 Sensitive TCGA-24-1105-01 IIIC G3 1-10 mm -TCGA-24-1413 51.63 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.3 0:DiseaseFree 6.3 1.6 Tooearly TCGA-24-1413-01 IIIC G3 1-10 mm -TCGA-24-1416 34.99 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.36 0:DiseaseFree 6.36 0.7 Tooearly TCGA-24-1416-01 IV G3 1-10 mm -TCGA-24-1417 54.18 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.8 0:DiseaseFree 7.8 2.7 Tooearly TCGA-24-1417-01 IV G3 1-10 mm -TCGA-24-1418 68.06 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.93 0:DiseaseFree 7.93 2.7 Tooearly TCGA-24-1418-01 IIIC G3 >20mm -TCGA-24-1419 62.08 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.84 0:DiseaseFree 7.84 3.8 Tooearly TCGA-24-1419-01 IIIC G3 11-20 mm -TCGA-24-1422 82.83 1:DECEASED 0.75 MISSING MISSING MISSING TCGA-24-1422-01 IIIC G3 1-10 mm -TCGA-24-1423 61.04 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.23 0:DiseaseFree 6.23 1.3 Tooearly TCGA-24-1423-01 IIIC G3 1-10 mm -TCGA-24-1424 67.25 0:LIVING COMPLETE RESPONSE TUMOR FREE 6 0:DiseaseFree 6 2.1 Tooearly TCGA-24-1424-01 IIIC G3 1-10 mm -TCGA-24-1425 45.93 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.93 0:DiseaseFree 5.93 1.1 Tooearly TCGA-24-1425-01 IIIC G3 1-10 mm -TCGA-24-1426 43.69 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.34 0:DiseaseFree 5.34 0.61 Tooearly TCGA-24-1426-01 IIIC G3 1-10 mm -TCGA-24-1427 58.69 0:LIVING PARTIAL RESPONSE WITH TUMOR 4.79 1:Recurred/Progressed MISSING MISSING TCGA-24-1427-01 IIIC G3 >20mm -TCGA-24-1428 50.15 0:LIVING 3.67 0:DiseaseFree 3.67 MISSING TCGA-24-1428-01 IIIC G3 1-10 mm -TCGA-24-1430 68.33 1:DECEASED COMPLETE RESPONSE WITH TUMOR 28.26 1:Recurred/Progressed 14.69 11.2 Sensitive TCGA-24-1430-01 IIIC G3 >20mm -TCGA-24-1431 67.83 1:DECEASED WITH TUMOR 19.11 1:Recurred/Progressed 6.52 1.7 Resistant TCGA-24-1431-01 IIIC G3 1-10 mm -TCGA-24-1434 59.75 1:DECEASED PARTIAL RESPONSE WITH TUMOR 18.62 1:Recurred/Progressed 11.05 3.6 Resistant TCGA-24-1434-01 IIIC G3 1-10 mm -TCGA-24-1435 57.83 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.41 1:Recurred/Progressed 16.56 11.7 Sensitive TCGA-24-1435-01 IIIC G3 1-10 mm -TCGA-24-1436 57.21 1:DECEASED PARTIAL RESPONSE WITH TUMOR 8.52 1:Recurred/Progressed MISSING MISSING TCGA-24-1436-01 IIIC G3 1-10 mm -TCGA-24-1463 70.5 1:DECEASED COMPLETE RESPONSE WITH TUMOR 72.72 1:Recurred/Progressed 31.84 27.9 Sensitive TCGA-24-1463-01 IIIC G3 >20mm -TCGA-24-1464 70.89 1:DECEASED WITH TUMOR 12.43 1:Recurred/Progressed 10.59 5.2 Resistant TCGA-24-1464-01 IIIC G3 >20mm -TCGA-24-1466 74.81 1:DECEASED COMPLETE RESPONSE WITH TUMOR 45.02 1:Recurred/Progressed 16.1 11.4 Sensitive TCGA-24-1466-01 IIIC G3 1-10 mm -TCGA-24-1467 51.1 1:DECEASED COMPLETE RESPONSE WITH TUMOR 105.7 1:Recurred/Progressed 41.05 37.42 Sensitive TCGA-24-1467-01 IIIC G3 1-10 mm -TCGA-24-1469 71.06 0:LIVING COMPLETE RESPONSE TUMOR FREE 9.08 0:DiseaseFree 9.08 4.7 Tooearly TCGA-24-1469-01 IIIC G3 1-10 mm -TCGA-24-1470 54.81 0:LIVING COMPLETE RESPONSE TUMOR FREE 3.41 0:DiseaseFree 3.41 0.7 Tooearly TCGA-24-1470-01 IIIB G3 1-10 mm -TCGA-24-1471 60.5 0:LIVING 1.18 0:DiseaseFree 1.18 MISSING TCGA-24-1471-01 IIIC G3 >20mm -TCGA-24-1474 57.27 1:DECEASED PARTIAL RESPONSE WITH TUMOR 22.13 1:Recurred/Progressed 10.85 6.9 Sensitive TCGA-24-1474-01 IIIC G3 1-10 mm -TCGA-24-1544 71.62 1:DECEASED PARTIAL RESPONSE WITH TUMOR 26.89 1:Recurred/Progressed 21.08 14.5 Sensitive TCGA-24-1544-01 IIIC G3 1-10 mm -TCGA-24-1545 69.75 1:DECEASED COMPLETE RESPONSE WITH TUMOR 57.21 1:Recurred/Progressed 28.23 19 Sensitive TCGA-24-1545-01 IIIC G3 >20mm -TCGA-24-1546 46.93 1:DECEASED 64.1 MISSING MISSING MISSING TCGA-24-1546-01 IIIC G3 1-10 mm -TCGA-24-1548 57.38 1:DECEASED COMPLETE RESPONSE WITH TUMOR 16.16 1:Recurred/Progressed 6.79 2.8 Resistant TCGA-24-1548-01 IIIC G3 1-10 mm -TCGA-24-1549 58.72 1:DECEASED COMPLETE RESPONSE WITH TUMOR 56.43 1:Recurred/Progressed 34.16 MISSING TCGA-24-1549-01 IIIB G3 -TCGA-24-1550 49.45 1:DECEASED COMPLETE RESPONSE WITH TUMOR 40.95 1:Recurred/Progressed 29.25 23.6 Sensitive TCGA-24-1550-01 IIIC G3 1-10 mm -TCGA-24-1551 53.87 1:DECEASED COMPLETE RESPONSE WITH TUMOR 51.77 1:Recurred/Progressed 25.05 20.6 Sensitive TCGA-24-1551-01 IIIC G3 1-10 mm -TCGA-24-1552 77.07 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.28 1:Recurred/Progressed 13.21 4.11 Resistant TCGA-24-1552-01 IIIC G3 1-10 mm -TCGA-24-1553 53.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 57.93 1:Recurred/Progressed 18.13 13.1 Sensitive TCGA-24-1553-01 IIIB G3 1-10 mm -TCGA-24-1555 50.42 1:DECEASED COMPLETE RESPONSE WITH TUMOR 88.26 1:Recurred/Progressed 51.7 MISSING TCGA-24-1555-01 IIIC G3 -TCGA-24-1556 50.73 1:DECEASED COMPLETE RESPONSE WITH TUMOR 70.43 1:Recurred/Progressed 18 MISSING TCGA-24-1556-01 IIB G3 1-10 mm -TCGA-24-1557 49.16 1:DECEASED PARTIAL RESPONSE WITH TUMOR 39.77 1:Recurred/Progressed 14.66 5.5 Resistant TCGA-24-1557-01 IIIC G3 >20mm -TCGA-24-1558 73.98 1:DECEASED PARTIAL RESPONSE WITH TUMOR 19.48 1:Recurred/Progressed 8.95 0.8 Resistant TCGA-24-1558-01 IIIC G3 1-10 mm -TCGA-24-1560 51.15 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.97 1:Recurred/Progressed 4.69 0.8 Resistant TCGA-24-1560-01 IIIC G3 1-10 mm -TCGA-24-1562 67.8 1:DECEASED COMPLETE RESPONSE WITH TUMOR 45.38 1:Recurred/Progressed 7.48 2.5 Resistant TCGA-24-1562-01 IIIC G3 1-10 mm -TCGA-24-1563 66.5 1:DECEASED COMPLETE RESPONSE WITH TUMOR 47.57 1:Recurred/Progressed 12.98 8.3 Sensitive TCGA-24-1563-01 IIIC G3 1-10 mm -TCGA-24-1564 67.58 1:DECEASED COMPLETE RESPONSE WITH TUMOR 25.8 1:Recurred/Progressed 7.25 3.4 Resistant TCGA-24-1564-01 IIIC G3 1-10 mm -TCGA-24-1565 74.1 1:DECEASED PARTIAL RESPONSE WITH TUMOR 10.23 1:Recurred/Progressed 4.75 0.7 Resistant TCGA-24-1565-01 IIIC G3 1-10 mm -TCGA-24-1567 54.36 1:DECEASED WITH TUMOR 17.18 1:Recurred/Progressed 10.98 5 Resistant TCGA-24-1567-01 IIIB G3 1-10 mm -TCGA-24-1603 53.92 1:DECEASED COMPLETE RESPONSE WITH TUMOR 89.9 1:Recurred/Progressed 32.52 MISSING TCGA-24-1603-01 IIIB G3 -TCGA-24-1604 67.04 1:DECEASED COMPLETE RESPONSE WITH TUMOR 88.1 1:Recurred/Progressed MISSING MISSING TCGA-24-1604-01 IIIC G3 -TCGA-24-1614 57.52 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.2 1:Recurred/Progressed 21.11 15 Sensitive TCGA-24-1614-01 IIIC G3 1-10 mm -TCGA-24-1616 56.95 1:DECEASED COMPLETE RESPONSE WITH TUMOR 38.13 1:Recurred/Progressed 13.28 7.9 Sensitive TCGA-24-1616-01 IIIC G3 1-10 mm -TCGA-24-1842 49.94 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.3 0:DiseaseFree 8.3 -0.14 Tooearly TCGA-24-1842-01 IIIC G3 1-10 mm -TCGA-24-1843 67.04 0:LIVING COMPLETE RESPONSE 3.48 0:DiseaseFree 3.48 -0.9 Tooearly TCGA-24-1843-01 IIIC G3 1-10 mm -TCGA-24-1844 64.5 0:LIVING 3.7 0:DiseaseFree 3.7 -0.7 Tooearly TCGA-24-1844-01 IIIC G3 1-10 mm -TCGA-24-1845 42.74 0:LIVING 3.8 0:DiseaseFree 3.8 -0.2 Tooearly TCGA-24-1845-01 IIIC G3 1-10 mm -TCGA-24-1846 45.3 0:LIVING 4.36 0:DiseaseFree 4.36 -1.3 Tooearly TCGA-24-1846-01 IIIC G3 1-10 mm -TCGA-24-1847 45.33 0:LIVING COMPLETE RESPONSE TUMOR FREE 10.75 0:DiseaseFree 10.75 0 Tooearly TCGA-24-1847-01 IV G3 1-10 mm -TCGA-24-1849 80.97 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.74 0:DiseaseFree 5.74 1.2 Tooearly TCGA-24-1849-01 IIIC G3 1-10 mm -TCGA-24-1850 72.24 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.48 0:DiseaseFree 5.48 1 Tooearly TCGA-24-1850-01 IIIC G3 1-10 mm -TCGA-24-1920 74.09 0:LIVING COMPLETE RESPONSE TUMOR FREE 9.77 0:DiseaseFree 9.77 5 Tooearly TCGA-24-1920-01 IIIC G3 1-10 mm -TCGA-24-1923 51.05 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.43 1:Recurred/Progressed 11.08 3.52 Resistant TCGA-24-1923-01 IIIC G3 1-10 mm -TCGA-24-1924 65.21 1:DECEASED COMPLETE RESPONSE WITH TUMOR 30.13 1:Recurred/Progressed 10.49 5.13 Resistant TCGA-24-1924-01 IIIC G3 1-10 mm -TCGA-24-1928 77.08 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 10.75 1:Recurred/Progressed 2.03 -1.9 Resistant TCGA-24-1928-01 IIIC G3 11-20 mm -TCGA-24-1930 53.36 1:DECEASED COMPLETE RESPONSE WITH TUMOR 78 1:Recurred/Progressed 14.92 8.72 Sensitive TCGA-24-1930-01 IIIC G3 1-10 mm -TCGA-24-2019 46.6 0:LIVING 4.85 0:DiseaseFree 4.85 MISSING TCGA-24-2019-01 IIIC G3 1-10 mm -TCGA-24-2020 67.62 1:DECEASED COMPLETE RESPONSE WITH TUMOR 151.57 1:Recurred/Progressed 23.7 MISSING TCGA-24-2020-01 IIIC G3 1-10 mm -TCGA-24-2023 54.52 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.72 1:Recurred/Progressed 35.05 MISSING TCGA-24-2023-01 IIIA G3 1-10 mm -TCGA-24-2024 72.53 1:DECEASED COMPLETE RESPONSE WITH TUMOR 58 1:Recurred/Progressed 13.8 9.8 Sensitive TCGA-24-2024-01 IIIC G3 1-10 mm -TCGA-24-2026 79.59 1:DECEASED WITH TUMOR 34.72 1:Recurred/Progressed MISSING MISSING TCGA-24-2026-01 IIIC G3 >20mm -TCGA-24-2027 51.6 1:DECEASED COMPLETE RESPONSE WITH TUMOR 109.38 1:Recurred/Progressed 20.23 11.63 Sensitive TCGA-24-2027-01 IV G3 >20mm -TCGA-24-2029 75.41 1:DECEASED COMPLETE RESPONSE WITH TUMOR 14.39 1:Recurred/Progressed 17.57 10.31 Sensitive TCGA-24-2029-01 IIIC G3 >20mm -TCGA-24-2030 COMPLETE RESPONSE WITH TUMOR 1:Recurred/Progressed 21.18 16.95 Sensitive TCGA-24-2030-01 IIIC G3 >20mm -TCGA-24-2033 1:DECEASED PARTIAL RESPONSE WITH TUMOR 18.43 1:Recurred/Progressed 11.51 3.77 Resistant TCGA-24-2033-01 IIIC G3 >20mm -TCGA-24-2035 65.35 1:DECEASED PARTIAL RESPONSE WITH TUMOR 28.1 1:Recurred/Progressed 9.41 MISSING TCGA-24-2035-01 IIIC G3 1-10 mm -TCGA-24-2036 50.91 1:DECEASED COMPLETE RESPONSE WITH TUMOR 63.84 1:Recurred/Progressed 29.97 24.87 Sensitive TCGA-24-2036-01 IIIA G3 No Macroscopic disease -TCGA-24-2038 68.38 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.36 1:Recurred/Progressed 38.33 MISSING TCGA-24-2038-01 IIIA 1-10 mm -TCGA-24-2254 66.87 1:DECEASED COMPLETE RESPONSE WITH TUMOR 56.92 1:Recurred/Progressed 19.87 14.37 Sensitive TCGA-24-2254-01 IIIC G3 1-10 mm -TCGA-24-2260 74.3 1:DECEASED COMPLETE RESPONSE 35.8 1:Recurred/Progressed 21.61 17.37 Sensitive TCGA-24-2260-01 IIIB G3 1-10 mm -TCGA-24-2261 76.43 1:DECEASED WITH TUMOR 0.79 1:Recurred/Progressed MISSING MISSING TCGA-24-2261-01 IIIC G3 11-20 mm -TCGA-24-2262 57.15 1:DECEASED WITH TUMOR 0.36 1:Recurred/Progressed MISSING MISSING TCGA-24-2262-01 IIIC G3 1-10 mm -TCGA-24-2267 58.34 1:DECEASED COMPLETE RESPONSE WITH TUMOR 47.41 1:Recurred/Progressed MISSING MISSING TCGA-24-2267-01 IIB G3 No Macroscopic disease -TCGA-24-2271 55.89 1:DECEASED WITH TUMOR 31.54 1:Recurred/Progressed 27.11 MISSING TCGA-24-2271-01 IIIC G3 >20mm -TCGA-24-2280 74.95 0:LIVING COMPLETE RESPONSE WITH TUMOR 70.26 1:Recurred/Progressed 17.51 11.61 Sensitive TCGA-24-2280-01 IIIC G3 1-10 mm -TCGA-24-2281 68.55 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.46 0:DiseaseFree 44.46 MISSING TCGA-24-2281-01 IIA G3 1-10 mm -TCGA-24-2288 70.77 1:DECEASED WITH TUMOR 0.82 1:Recurred/Progressed MISSING MISSING TCGA-24-2288-01 IIIC G3 >20mm -TCGA-24-2289 69.02 1:DECEASED COMPLETE RESPONSE WITH TUMOR 67.18 1:Recurred/Progressed 18.62 12.52 Sensitive TCGA-24-2289-01 IV G3 >20mm -TCGA-24-2290 56.24 1:DECEASED COMPLETE RESPONSE WITH TUMOR 36.13 1:Recurred/Progressed 10.62 6.66 Sensitive TCGA-24-2290-01 IIIC G3 1-10 mm -TCGA-24-2293 27.21 PROGRESSIVE DISEASE 16.59 MISSING MISSING MISSING TCGA-24-2293-01 G3 >20mm -TCGA-24-2297 56.13 1:DECEASED COMPLETE RESPONSE 55.7 MISSING MISSING MISSING TCGA-24-2297-01 IIIC G3 >20mm -TCGA-24-2298 56.04 COMPLETE RESPONSE WITH TUMOR 1:Recurred/Progressed MISSING MISSING TCGA-24-2298-01 IIIC G3 >20mm -TCGA-25-1312 69.96 1:DECEASED 1.02 MISSING MISSING MISSING TCGA-25-1312-01 IV G3 1-10 mm -TCGA-25-1313 62.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 26.85 1:Recurred/Progressed 12.92 8 Sensitive TCGA-25-1313-01 IV G3 1-10 mm -TCGA-25-1314 42.36 1:DECEASED PARTIAL RESPONSE WITH TUMOR 32.89 1:Recurred/Progressed 8.95 MISSING TCGA-25-1314-01 IV G3 1-10 mm -TCGA-25-1315 50.04 1:DECEASED PARTIAL RESPONSE WITH TUMOR 51.9 1:Recurred/Progressed 5.02 0 Resistant TCGA-25-1315-01 IIIC G3 1-10 mm -TCGA-25-1316 55.7 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 41.93 1:Recurred/Progressed 9.05 1.9 Resistant TCGA-25-1316-01 IIIC G3 1-10 mm -TCGA-25-1317 66.3 1:DECEASED 2.23 MISSING MISSING MISSING TCGA-25-1317-01 IIIC G3 -TCGA-25-1318 54.12 1:DECEASED PARTIAL RESPONSE WITH TUMOR 34.89 1:Recurred/Progressed 6.07 2.1 Resistant TCGA-25-1318-01 IIIC G3 1-10 mm -TCGA-25-1319 73.39 1:DECEASED 64.82 1:Recurred/Progressed 23.93 MISSING TCGA-25-1319-01 IIIC G3 11-20 mm -TCGA-25-1320 65.8 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 37.84 1:Recurred/Progressed 13.87 8 Sensitive TCGA-25-1320-01 IIIC G3 1-10 mm -TCGA-25-1321 65.72 1:DECEASED COMPLETE RESPONSE WITH TUMOR 33.87 1:Recurred/Progressed 14.85 9 Sensitive TCGA-25-1321-01 IIIC G3 No Macroscopic disease -TCGA-25-1322 62.04 1:DECEASED WITH TUMOR 2.98 1:Recurred/Progressed MISSING MISSING TCGA-25-1322-01 IV G3 >20mm -TCGA-25-1323 72.88 1:DECEASED COMPLETE RESPONSE WITH TUMOR 12.95 1:Recurred/Progressed 11.97 7.9 Sensitive TCGA-25-1323-01 IIIC G3 1-10 mm -TCGA-25-1324 74.22 1:DECEASED 33.93 MISSING MISSING MISSING TCGA-25-1324-01 IIIC G3 1-10 mm -TCGA-25-1325 77.21 1:DECEASED 32 MISSING MISSING MISSING TCGA-25-1325-01 IV G3 >20mm -TCGA-25-1326 61.2 1:DECEASED PARTIAL RESPONSE WITH TUMOR 40.92 1:Recurred/Progressed 12.95 8 Sensitive TCGA-25-1326-01 IIIC G3 1-10 mm -TCGA-25-1328 38.11 1:DECEASED PARTIAL RESPONSE WITH TUMOR 65.87 1:Recurred/Progressed 8 1 Resistant TCGA-25-1328-01 IIIC G3 1-10 mm -TCGA-25-1329 76.97 1:DECEASED 14.98 MISSING MISSING MISSING TCGA-25-1329-01 IIIC G3 11-20 mm -TCGA-25-1623 71.39 1:DECEASED COMPLETE RESPONSE WITH TUMOR 18.52 1:Recurred/Progressed 11.21 6.7 Sensitive TCGA-25-1623-01 IV G3 No Macroscopic disease -TCGA-25-1625 66.57 1:DECEASED STABLE DISEASE WITH TUMOR 27.54 1:Recurred/Progressed 17.25 MISSING TCGA-25-1625-01 IIIC G3 1-10 mm -TCGA-25-1626 65.57 1:DECEASED PARTIAL RESPONSE WITH TUMOR 16.95 1:Recurred/Progressed 10.43 3.6 Resistant TCGA-25-1626-01 IIIC G3 >20mm -TCGA-25-1627 73.38 1:DECEASED 12.92 MISSING MISSING MISSING TCGA-25-1627-01 IIIC G3 1-10 mm -TCGA-25-1628 67.09 1:DECEASED STABLE DISEASE WITH TUMOR 20.52 1:Recurred/Progressed 9.38 3.5 Resistant TCGA-25-1628-01 IIIC G3 1-10 mm -TCGA-25-1630 73.99 1:DECEASED COMPLETE RESPONSE 38.1 MISSING MISSING MISSING TCGA-25-1630-01 IIIC G3 1-10 mm -TCGA-25-1631 73.12 1:DECEASED TUMOR FREE 0.3 0:DiseaseFree 0.3 MISSING TCGA-25-1631-01 IIIC G3 1-10 mm -TCGA-25-1632 68.47 1:DECEASED COMPLETE RESPONSE WITH TUMOR 58.98 1:Recurred/Progressed 17.61 11 Sensitive TCGA-25-1632-01 IV G3 1-10 mm -TCGA-25-1633 64.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 62 1:Recurred/Progressed 20.2 14.3 Sensitive TCGA-25-1633-01 IIIC G3 1-10 mm -TCGA-25-1634 76.02 1:DECEASED COMPLETE RESPONSE WITH TUMOR 35.77 1:Recurred/Progressed 12.46 5.8 Resistant TCGA-25-1634-01 IIIC G3 No Macroscopic disease -TCGA-25-1635 71.78 1:DECEASED COMPLETE RESPONSE WITH TUMOR 51.9 1:Recurred/Progressed 20.13 12.5 Sensitive TCGA-25-1635-01 IIIC G3 1-10 mm -TCGA-25-1870 59.04 1:DECEASED PARTIAL RESPONSE WITH TUMOR 14.89 1:Recurred/Progressed 7.93 MISSING TCGA-25-1870-01 IIIC G3 11-20 mm -TCGA-25-1871 70.21 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 24.92 1:Recurred/Progressed 7.54 MISSING TCGA-25-1871-01 IIIC G3 11-20 mm -TCGA-25-1877 81.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 23.93 1:Recurred/Progressed 18 MISSING TCGA-25-1877-01 IIIC G3 1-10 mm -TCGA-25-1878 60.37 1:DECEASED COMPLETE RESPONSE WITH TUMOR 84.82 1:Recurred/Progressed 31.84 MISSING TCGA-25-1878-01 IIIC G3 1-10 mm -TCGA-25-2042 60.62 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 12.98 1:Recurred/Progressed MISSING MISSING TCGA-25-2042-01 IIIC G3 >20mm -TCGA-25-2391 57.36 1:DECEASED COMPLETE RESPONSE TUMOR FREE 48.92 0:DiseaseFree 48.92 43.82 Sensitive TCGA-25-2391-01 IIIC G3 >20mm -TCGA-25-2392 75.8 1:DECEASED 1.02 MISSING MISSING MISSING TCGA-25-2392-01 IV G3 11-20 mm -TCGA-25-2393 81.05 1:DECEASED PARTIAL RESPONSE WITH TUMOR 37.93 1:Recurred/Progressed 10 5.9 Resistant TCGA-25-2393-01 IIIC G3 11-20 mm -TCGA-25-2396 71.63 1:DECEASED 3.02 MISSING MISSING MISSING TCGA-25-2396-01 IIIC G3 No Macroscopic disease -TCGA-25-2397 59.13 1:DECEASED 11.97 MISSING MISSING MISSING TCGA-25-2397-01 IV G3 No Macroscopic disease -TCGA-25-2398 71.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.89 1:Recurred/Progressed 18.92 13.88 Sensitive TCGA-25-2398-01 IIIC G3 1-10 mm -TCGA-25-2399 80.47 1:DECEASED PARTIAL RESPONSE WITH TUMOR 19.93 1:Recurred/Progressed 7.97 1.9 Resistant TCGA-25-2399-01 IIIC G3 >20mm -TCGA-25-2400 76.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.9 1:Recurred/Progressed 18.92 12.85 Sensitive TCGA-25-2400-01 IIIC G3 No Macroscopic disease -TCGA-25-2401 64.96 1:DECEASED 2.95 MISSING MISSING MISSING TCGA-25-2401-01 IIIC G3 1-10 mm -TCGA-25-2404 38.86 1:DECEASED COMPLETE RESPONSE WITH TUMOR 28.92 1:Recurred/Progressed 13.93 9.9 Sensitive TCGA-25-2404-01 IIIC G3 No Macroscopic disease -TCGA-25-2408 37.28 1:DECEASED PARTIAL RESPONSE WITH TUMOR 30.89 1:Recurred/Progressed 10.92 MISSING TCGA-25-2408-01 IV G2 1-10 mm -TCGA-25-2409 71.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 26.89 1:Recurred/Progressed 9.93 3.9 Resistant TCGA-25-2409-01 IV G3 1-10 mm -TCGA-29-1688 39.93 1:DECEASED STABLE DISEASE WITH TUMOR 78.66 1:Recurred/Progressed 6 MISSING TCGA-29-1688-01 IIIC G2 -TCGA-29-1690 66.62 1:DECEASED WITH TUMOR 47.48 1:Recurred/Progressed MISSING MISSING TCGA-29-1690-01 IIIC G2 11-20 mm -TCGA-29-1691 51.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.2 1:Recurred/Progressed 20.1 15.6 Sensitive TCGA-29-1691-01 IIIC G2 1-10 mm -TCGA-29-1693 72.05 0:LIVING COMPLETE RESPONSE WITH TUMOR 101.48 1:Recurred/Progressed 22.75 16.4 Sensitive TCGA-29-1693-01 IIIC G3 >20mm -TCGA-29-1694 45.27 1:DECEASED STABLE DISEASE WITH TUMOR 38.92 1:Recurred/Progressed MISSING MISSING TCGA-29-1694-01 IIIC 11-20 mm -TCGA-29-1695 62.72 1:DECEASED 40.3 MISSING MISSING MISSING TCGA-29-1695-01 IIIC G2 >20mm -TCGA-29-1696 43.34 1:DECEASED PARTIAL RESPONSE WITH TUMOR 33.84 1:Recurred/Progressed 11.21 5.6 Resistant TCGA-29-1696-01 IIIC G2 1-10 mm -TCGA-29-1697 62.83 1:DECEASED COMPLETE RESPONSE WITH TUMOR 31.08 1:Recurred/Progressed 16.36 10.4 Sensitive TCGA-29-1697-01 IIIC G3 >20mm -TCGA-29-1698 53.73 0:LIVING COMPLETE RESPONSE WITH TUMOR 68.1 1:Recurred/Progressed 5.9 -1.8 Resistant TCGA-29-1698-01 IIIC G3 1-10 mm -TCGA-29-1699 57.89 1:DECEASED 36.26 MISSING MISSING MISSING TCGA-29-1699-01 IIIC G3 1-10 mm -TCGA-29-1701 56.81 1:DECEASED PARTIAL RESPONSE WITH TUMOR 16.89 1:Recurred/Progressed 9.77 4.5 Resistant TCGA-29-1701-01 IIIC G3 -TCGA-29-1702 84.68 1:DECEASED COMPLETE RESPONSE WITH TUMOR 23.87 1:Recurred/Progressed 9.34 2.9 Resistant TCGA-29-1702-01 IIIC G3 1-10 mm -TCGA-29-1703 56.5 0:LIVING COMPLETE RESPONSE WITH TUMOR 55.08 1:Recurred/Progressed 10.62 5.3 Resistant TCGA-29-1703-01 IIIC G2 1-10 mm -TCGA-29-1705 48.03 1:DECEASED COMPLETE RESPONSE WITH TUMOR 18.2 1:Recurred/Progressed 9.28 3.71 Resistant TCGA-29-1705-01 IIIC G2 >20mm -TCGA-29-1707 41.14 0:LIVING COMPLETE RESPONSE 41.84 1:Recurred/Progressed 39.34 34.8 Sensitive TCGA-29-1707-01 IIC G3 No Macroscopic disease -TCGA-29-1710 54.71 1:DECEASED PARTIAL RESPONSE WITH TUMOR 31.18 1:Recurred/Progressed 10.33 MISSING TCGA-29-1710-01 IIIC G2 1-10 mm -TCGA-29-1711 45.16 0:LIVING COMPLETE RESPONSE TUMOR FREE 34.52 0:DiseaseFree 34.52 30.1 Sensitive TCGA-29-1711-01 IIIC G2 No Macroscopic disease -TCGA-29-1761 80.38 1:DECEASED STABLE DISEASE WITH TUMOR 17.31 1:Recurred/Progressed MISSING MISSING TCGA-29-1761-01 IIIC G3 >20mm -TCGA-29-1762 59.94 1:DECEASED COMPLETE RESPONSE WITH TUMOR 86.36 1:Recurred/Progressed 45.05 40.6 Sensitive TCGA-29-1762-01 IV G2 >20mm -TCGA-29-1763 43.89 0:LIVING COMPLETE RESPONSE WITH TUMOR 66.59 1:Recurred/Progressed 14.03 10.8 Sensitive TCGA-29-1763-01 IIC G2 1-10 mm -TCGA-29-1764 49.35 0:LIVING COMPLETE RESPONSE WITH TUMOR 62.75 1:Recurred/Progressed 25.97 20.5 Sensitive TCGA-29-1764-01 IIIC G2 >20mm -TCGA-29-1766 74.96 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 39.28 1:Recurred/Progressed 22.03 15.9 Sensitive TCGA-29-1766-01 IIIC G2 11-20 mm -TCGA-29-1768 50.4 1:DECEASED STABLE DISEASE WITH TUMOR 31.21 1:Recurred/Progressed 17.93 14.6 Sensitive TCGA-29-1768-01 IV G3 >20mm -TCGA-29-1769 40.42 0:LIVING COMPLETE RESPONSE TUMOR FREE 22.92 0:DiseaseFree 22.92 18 Sensitive TCGA-29-1769-01 IIIC G3 1-10 mm -TCGA-29-1770 54.83 0:LIVING COMPLETE RESPONSE WITH TUMOR 24.3 1:Recurred/Progressed 12.36 7.9 Sensitive TCGA-29-1770-01 IIIC G2 1-10 mm -TCGA-29-1771 76.97 0:LIVING COMPLETE RESPONSE WITH TUMOR 22.46 1:Recurred/Progressed 19.48 14.9 Sensitive TCGA-29-1771-01 IIIC G2 >20mm -TCGA-29-1774 82.17 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 17.25 1:Recurred/Progressed 7.64 6.5 Sensitive TCGA-29-1774-01 IIIC G3 >20mm -TCGA-29-1775 51.9 0:LIVING COMPLETE RESPONSE WITH TUMOR 12.33 1:Recurred/Progressed 11.18 5.7 Resistant TCGA-29-1775-01 IIIC G2 -TCGA-29-1776 63.06 0:LIVING STABLE DISEASE WITH TUMOR 11.8 1:Recurred/Progressed MISSING MISSING TCGA-29-1776-01 IIIC G3 >20mm -TCGA-29-1777 47.55 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 12.26 1:Recurred/Progressed MISSING MISSING TCGA-29-1777-01 IIIC G2 >20mm -TCGA-29-1778 77.11 0:LIVING COMPLETE RESPONSE TUMOR FREE 14.89 0:DiseaseFree 14.89 10.8 Sensitive TCGA-29-1778-01 IIIC G3 No Macroscopic disease -TCGA-29-1781 69.6 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.33 0:DiseaseFree 8.33 0 Tooearly TCGA-29-1781-01 IIIC G3 -TCGA-29-1783 58.31 0:LIVING TUMOR FREE 7.18 0:DiseaseFree 7.18 2.1 Tooearly TCGA-29-1783-01 IIIC G3 -TCGA-29-1784 55.37 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.34 0:DiseaseFree 5.34 0.9 Tooearly TCGA-29-1784-01 IIIC G3 -TCGA-29-1785 55.94 1:DECEASED COMPLETE RESPONSE 36.2 1:Recurred/Progressed 15.51 10.4 Sensitive TCGA-29-1785-01 IIIC G3 >20mm -TCGA-29-2414 75.12 1:DECEASED COMPLETE RESPONSE WITH TUMOR 85.93 1:Recurred/Progressed 18.07 13.73 Sensitive TCGA-29-2414-01 IIIC G2 11-20 mm -TCGA-29-2425 60.52 0:LIVING COMPLETE RESPONSE TUMOR FREE 64.82 1:Recurred/Progressed 51.7 44.97 Sensitive TCGA-29-2425-01 IIIC G2 >20mm -TCGA-29-2427 60.11 0:LIVING COMPLETE RESPONSE WITH TUMOR 62.3 1:Recurred/Progressed 51.84 MISSING TCGA-29-2427-01 IIIC G3 >20mm -TCGA-29-2428 58.61 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.98 0:DiseaseFree 44.98 40.28 Sensitive TCGA-29-2428-01 IIIC G3 >20mm -TCGA-30-1714 68.58 1:DECEASED COMPLETE RESPONSE WITH TUMOR 37.97 1:Recurred/Progressed 7.9 3.9 Resistant TCGA-30-1714-01 IV G3 1-10 mm -TCGA-30-1718 44.93 1:DECEASED WITH TUMOR 51.77 1:Recurred/Progressed 29.38 23.6 Sensitive TCGA-30-1718-01 IIIC G3 1-10 mm -TCGA-30-1853 58.64 1:DECEASED COMPLETE RESPONSE WITH TUMOR 36.16 1:Recurred/Progressed 20.79 16.7 Sensitive TCGA-30-1853-01 IIIC G3 1-10 mm -TCGA-30-1855 61.35 1:DECEASED WITH TUMOR 2.46 1:Recurred/Progressed MISSING MISSING TCGA-30-1855-01 IIIC G3 1-10 mm -TCGA-30-1856 56.51 1:DECEASED PARTIAL RESPONSE WITH TUMOR 15.64 1:Recurred/Progressed 7.18 0.8 Resistant TCGA-30-1856-01 IIIC G3 1-10 mm -TCGA-30-1857 64.91 1:DECEASED WITH TUMOR 0.13 1:Recurred/Progressed MISSING MISSING TCGA-30-1857-01 IV G3 -TCGA-30-1859 56.16 1:DECEASED PARTIAL RESPONSE WITH TUMOR 47.93 1:Recurred/Progressed MISSING MISSING TCGA-30-1859-01 G3 1-10 mm -TCGA-30-1860 58.65 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.79 1:Recurred/Progressed 13.02 6.3 Sensitive TCGA-30-1860-01 IIIC G3 >20mm -TCGA-30-1861 74.25 1:DECEASED 34.69 MISSING MISSING MISSING TCGA-30-1861-01 IIIC G3 1-10 mm -TCGA-30-1862 65.47 1:DECEASED WITH TUMOR 6.07 1:Recurred/Progressed MISSING MISSING TCGA-30-1862-01 IV G2 >20mm -TCGA-30-1866 61.81 1:DECEASED COMPLETE RESPONSE WITH TUMOR 36.52 1:Recurred/Progressed 9.31 5.2 Resistant TCGA-30-1866-01 IV G2 1-10 mm -TCGA-30-1867 47.01 1:DECEASED WITH TUMOR 1.18 1:Recurred/Progressed MISSING MISSING TCGA-30-1867-01 IV -TCGA-30-1880 56.23 1:DECEASED PARTIAL RESPONSE WITH TUMOR 57.41 1:Recurred/Progressed 11.41 6.4 Sensitive TCGA-30-1880-01 IIIC G3 No Macroscopic disease -TCGA-30-1887 67.11 1:DECEASED PARTIAL RESPONSE WITH TUMOR 24.2 1:Recurred/Progressed MISSING MISSING TCGA-30-1887-01 IIIC G2 1-10 mm -TCGA-30-1891 61.22 1:DECEASED PARTIAL RESPONSE WITH TUMOR 29.97 1:Recurred/Progressed 5.93 1.3 Resistant TCGA-30-1891-01 IIIC G2 1-10 mm -TCGA-30-1892 52.75 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.66 1:Recurred/Progressed 8.3 3.9 Resistant TCGA-30-1892-01 IIIC G3 1-10 mm -TCGA-31-1944 47.11 0:LIVING COMPLETE RESPONSE WITH TUMOR 45.87 1:Recurred/Progressed 22.66 14.79 Sensitive TCGA-31-1944-01 IIIC G3 No Macroscopic disease -TCGA-31-1946 30.5 0:LIVING WITH TUMOR 30.49 1:Recurred/Progressed 22.16 20.4 Sensitive TCGA-31-1946-01 IIIC G3 No Macroscopic disease -TCGA-31-1950 76.96 0:LIVING PARTIAL RESPONSE WITH TUMOR 19.02 1:Recurred/Progressed 11.74 6.7 Sensitive TCGA-31-1950-01 IIIC G2 1-10 mm -TCGA-31-1951 58.48 0:LIVING WITH TUMOR 22.66 1:Recurred/Progressed 21.84 16.74 Sensitive TCGA-31-1951-01 IIIC G3 No Macroscopic disease -TCGA-31-1953 52.2 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 7.05 1:Recurred/Progressed 2.66 0.2 Resistant TCGA-31-1953-01 IIIC G3 -TCGA-31-1956 60.55 0:LIVING WITH TUMOR 43.97 1:Recurred/Progressed MISSING MISSING TCGA-31-1956-01 IIIB G3 -TCGA-31-1959 49.96 0:LIVING WITH TUMOR 2.49 1:Recurred/Progressed MISSING MISSING TCGA-31-1959-01 IV G2 -TCGA-36-1568 52.91 0:LIVING PARTIAL RESPONSE WITH TUMOR 28.66 1:Recurred/Progressed 17.93 14 Sensitive TCGA-36-1568-01 IIIC G3 -TCGA-36-1569 52.5 0:LIVING PARTIAL RESPONSE 28.56 0:DiseaseFree 28.56 MISSING TCGA-36-1569-01 IIIC G3 1-10 mm -TCGA-36-1570 49.19 0:LIVING PARTIAL RESPONSE WITH TUMOR 21.48 1:Recurred/Progressed 12.3 8 Sensitive TCGA-36-1570-01 IIIC G3 >20mm -TCGA-36-1571 53.72 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.79 1:Recurred/Progressed 12.26 6.6 Sensitive TCGA-36-1571-01 IIIB G3 No Macroscopic disease -TCGA-36-1574 48.9 0:LIVING COMPLETE RESPONSE WITH TUMOR 22.49 1:Recurred/Progressed 21.25 14.6 Sensitive TCGA-36-1574-01 IIIC G3 >20mm -TCGA-36-1575 83.81 0:LIVING TUMOR FREE 8.52 0:DiseaseFree 8.52 MISSING TCGA-36-1575-01 IIIB G3 No Macroscopic disease -TCGA-36-1576 76.1 0:LIVING COMPLETE RESPONSE WITH TUMOR 29.97 1:Recurred/Progressed 26.75 19.5 Sensitive TCGA-36-1576-01 IIIC G3 >20mm -TCGA-36-1577 43.3 0:LIVING COMPLETE RESPONSE TUMOR FREE 25.67 0:DiseaseFree 25.67 MISSING TCGA-36-1577-01 IIC G2 No Macroscopic disease -TCGA-36-1578 63.92 0:LIVING WITH TUMOR 27.77 1:Recurred/Progressed 10.16 3.1 Resistant TCGA-36-1578-01 IV G3 >20mm -TCGA-36-1580 82.17 1:DECEASED WITH TUMOR 24.16 1:Recurred/Progressed 14.43 3 Resistant TCGA-36-1580-01 IIIC G3 >20mm -TCGA-36-1581 63.76 0:LIVING COMPLETE RESPONSE WITH TUMOR 24.62 1:Recurred/Progressed 23.02 18.5 Sensitive TCGA-36-1581-01 IIC G3 No Macroscopic disease -TCGA-57-1582 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 23.97 1:Recurred/Progressed MISSING MISSING TCGA-57-1582-01 IIIC G3 1-10 mm -TCGA-57-1583 57.96 1:DECEASED WITH TUMOR 11.34 1:Recurred/Progressed MISSING MISSING TCGA-57-1583-01 IIIC G3 No Macroscopic disease -TCGA-57-1584 47.28 0:LIVING WITH TUMOR 21.08 1:Recurred/Progressed 17.38 MISSING TCGA-57-1584-01 IIIC G3 1-10 mm -TCGA-57-1585 57.18 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 1.08 1:Recurred/Progressed MISSING MISSING TCGA-57-1585-01 IIIC G3 11-20 mm -TCGA-57-1586 66.68 0:LIVING WITH TUMOR 21.57 1:Recurred/Progressed 7.8 3.2 Resistant TCGA-57-1586-01 IIIC G3 11-20 mm -TCGA-57-1993 56.15 0:LIVING TUMOR FREE 24.69 0:DiseaseFree 24.69 MISSING TCGA-57-1993-01 IIIC G3 No Macroscopic disease -TCGA-57-1994 MISSING MISSING TCGA-57-1994-01 -TCGA-59-2348 0:LIVING COMPLETE RESPONSE TUMOR FREE 179.18 0:DiseaseFree 179.18 MISSING TCGA-59-2348-01 IIIC G3 -TCGA-59-2350 1:DECEASED PARTIAL RESPONSE WITH TUMOR 22.26 1:Recurred/Progressed 6.92 MISSING TCGA-59-2350-01 IV G3 1-10 mm -TCGA-59-2351 0:LIVING COMPLETE RESPONSE TUMOR FREE 115.8 1:Recurred/Progressed 70.13 MISSING TCGA-59-2351-01 IIIC G3 1-10 mm -TCGA-59-2352 1:DECEASED WITH TUMOR 8.2 1:Recurred/Progressed MISSING MISSING TCGA-59-2352-01 IIIC G3 -TCGA-59-2354 1:DECEASED STABLE DISEASE WITH TUMOR 34.3 1:Recurred/Progressed 15.11 MISSING TCGA-59-2354-01 IIIC G3 1-10 mm -TCGA-59-2355 1:DECEASED WITH TUMOR 2.13 1:Recurred/Progressed MISSING MISSING TCGA-59-2355-01 IV G3 >20mm -TCGA-59-2363 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.15 0:DiseaseFree 5.15 MISSING TCGA-59-2363-01 IIIA G3 No Macroscopic disease -TCGA-61-1724 47.03 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 20.95 1:Recurred/Progressed MISSING MISSING TCGA-61-1724-01 IIIC G3 No Macroscopic disease -TCGA-61-1725 40.49 0:LIVING STABLE DISEASE WITH TUMOR 31.44 1:Recurred/Progressed 27.77 22.5 Sensitive TCGA-61-1725-01 IIIC G3 11-20 mm -TCGA-61-1728 59.12 0:LIVING COMPLETE RESPONSE TUMOR FREE 27.9 1:Recurred/Progressed 17.57 10.8 Sensitive TCGA-61-1728-01 IV G3 1-10 mm -TCGA-61-1733 71.72 0:LIVING STABLE DISEASE WITH TUMOR 31.8 1:Recurred/Progressed 5.84 1.6 Resistant TCGA-61-1733-01 IIIC G3 No Macroscopic disease -TCGA-61-1736 45.5 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.79 1:Recurred/Progressed 25.18 20.5 Sensitive TCGA-61-1736-01 IIIC G3 -TCGA-61-1737 42.55 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.23 0:DiseaseFree 44.23 39 Sensitive TCGA-61-1737-01 IV G3 1-10 mm -TCGA-61-1738 60.16 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 35.93 1:Recurred/Progressed 9.28 0 Resistant TCGA-61-1738-01 IIIC G3 1-10 mm -TCGA-61-1740 71.68 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 2.62 1:Recurred/Progressed MISSING MISSING TCGA-61-1740-01 IIIC G3 >20mm -TCGA-61-1741 76.05 1:DECEASED COMPLETE RESPONSE WITH TUMOR 33.67 1:Recurred/Progressed 16.07 10.1 Sensitive TCGA-61-1741-01 IIIB G3 >20mm -TCGA-61-1743 53.05 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.64 1:Recurred/Progressed 26.59 21 Sensitive TCGA-61-1743-01 IIC G2 No Macroscopic disease -TCGA-61-1895 52.21 0:LIVING STABLE DISEASE TUMOR FREE 1.54 0:DiseaseFree 1.54 -3.7 Tooearly TCGA-61-1895-01 IIIB G3 No Macroscopic disease -TCGA-61-1899 81.32 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.69 0:DiseaseFree 8.69 3.2 Tooearly TCGA-61-1899-01 IIIC G3 No Macroscopic disease -TCGA-61-1900 51.95 0:LIVING STABLE DISEASE TUMOR FREE 5.8 0:DiseaseFree 5.8 3.3 Tooearly TCGA-61-1900-01 IIIB G3 No Macroscopic disease -TCGA-61-1901 65.87 1:DECEASED STABLE DISEASE WITH TUMOR 11.38 1:Recurred/Progressed 10.79 1.2 Resistant TCGA-61-1901-01 IV G3 -TCGA-61-1904 60.29 0:LIVING COMPLETE RESPONSE TUMOR FREE 9.18 0:DiseaseFree 9.18 3.8 Tooearly TCGA-61-1904-01 IIIC G3 1-10 mm -TCGA-61-1906 55.81 1:DECEASED COMPLETE RESPONSE WITH TUMOR 34.23 1:Recurred/Progressed 7.93 2.8 Resistant TCGA-61-1906-01 IIIC G3 11-20 mm -TCGA-61-1907 63.56 0:LIVING STABLE DISEASE WITH TUMOR 31.38 1:Recurred/Progressed 24.52 19.1 Sensitive TCGA-61-1907-01 IIIC G3 11-20 mm -TCGA-61-1910 56.92 0:LIVING COMPLETE RESPONSE TUMOR FREE 37.05 0:DiseaseFree 37.05 31.7 Sensitive TCGA-61-1910-01 IIC G3 1-10 mm -TCGA-61-1911 55.17 0:LIVING COMPLETE RESPONSE WITH TUMOR 42.62 1:Recurred/Progressed 27.9 23 Sensitive TCGA-61-1911-01 IIA G3 -TCGA-61-1913 48.12 0:LIVING COMPLETE RESPONSE TUMOR FREE 49.08 0:DiseaseFree 49.08 44.7 Sensitive TCGA-61-1913-01 IIIB G3 1-10 mm -TCGA-61-1914 65.33 0:LIVING COMPLETE RESPONSE WITH TUMOR 56.52 1:Recurred/Progressed 54.95 48.6 Sensitive TCGA-61-1914-01 IIIC G3 >20mm -TCGA-61-1915 50.46 0:LIVING COMPLETE RESPONSE TUMOR FREE 67.7 0:DiseaseFree 67.7 63 Sensitive TCGA-61-1915-01 IIC G3 -TCGA-61-1917 60.19 1:DECEASED COMPLETE RESPONSE 43.41 MISSING MISSING MISSING TCGA-61-1917-01 IIIB G3 -TCGA-61-1918 45.7 1:DECEASED COMPLETE RESPONSE WITH TUMOR 15.93 1:Recurred/Progressed 13.77 8.7 Sensitive TCGA-61-1918-01 IV G3 No Macroscopic disease -TCGA-61-1919 58.07 1:DECEASED COMPLETE RESPONSE 38.16 1:Recurred/Progressed 14.49 MISSING TCGA-61-1919-01 IIIC G2 -TCGA-61-1995 43.86 0:LIVING STABLE DISEASE WITH TUMOR 2.16 1:Recurred/Progressed MISSING MISSING TCGA-61-1995-01 IIIC G3 1-10 mm -TCGA-61-1998 48.91 0:LIVING WITH TUMOR 5.61 1:Recurred/Progressed MISSING MISSING TCGA-61-1998-01 IIIC G3 1-10 mm -TCGA-61-2000 67.72 0:LIVING STABLE DISEASE WITH TUMOR 14.66 1:Recurred/Progressed 11.31 3.6 Resistant TCGA-61-2000-01 IIIC G3 No Macroscopic disease -TCGA-61-2002 46.88 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 18.1 1:Recurred/Progressed MISSING MISSING TCGA-61-2002-01 IIIC G3 11-20 mm -TCGA-61-2003 53.73 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 3.8 1:Recurred/Progressed MISSING MISSING TCGA-61-2003-01 IIIC G2 1-10 mm -TCGA-61-2008 40.51 0:LIVING COMPLETE RESPONSE WITH TUMOR 30.69 1:Recurred/Progressed 26.95 22 Sensitive TCGA-61-2008-01 IIC G2 No Macroscopic disease -TCGA-61-2009 65.12 0:LIVING COMPLETE RESPONSE WITH TUMOR 39.87 1:Recurred/Progressed 3.44 0.54 Resistant TCGA-61-2009-01 IIIC G3 11-20 mm -TCGA-61-2012 81.72 0:LIVING 30.62 0:DiseaseFree 30.62 MISSING TCGA-61-2012-01 IIC G2 -TCGA-61-2016 51.47 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 1.25 1:Recurred/Progressed MISSING MISSING TCGA-61-2016-01 IIIC G3 No Macroscopic disease -TCGA-61-2088 51.42 0:LIVING TUMOR FREE 4.82 0:DiseaseFree 4.82 0 Tooearly TCGA-61-2088-01 IIIC G3 No Macroscopic disease -TCGA-61-2092 57.72 0:LIVING COMPLETE RESPONSE TUMOR FREE 51.67 0:DiseaseFree 51.67 46.4 Sensitive TCGA-61-2092-01 IIIC G3 No Macroscopic disease -TCGA-61-2094 63.75 0:LIVING COMPLETE RESPONSE TUMOR FREE 71.67 0:DiseaseFree 71.67 66.2 Sensitive TCGA-61-2094-01 IIIC G3 -TCGA-61-2095 54.23 1:DECEASED COMPLETE RESPONSE WITH TUMOR 61.54 1:Recurred/Progressed 14.66 MISSING TCGA-61-2095-01 IIIC G2 No Macroscopic disease -TCGA-61-2097 71.11 0:LIVING COMPLETE RESPONSE TUMOR FREE 60.69 0:DiseaseFree 60.69 55.1 Sensitive TCGA-61-2097-01 IIC G2 1-10 mm -TCGA-61-2098 62.65 0:LIVING COMPLETE RESPONSE TUMOR FREE 65.54 0:DiseaseFree 65.54 60.7 Sensitive TCGA-61-2098-01 IIIC G2 11-20 mm -TCGA-61-2101 55.57 1:DECEASED PARTIAL RESPONSE WITH TUMOR 55.44 1:Recurred/Progressed MISSING 48.2 MISSING TCGA-61-2101-01 IIIC G2 11-20 mm -TCGA-61-2102 74.66 1:DECEASED WITH TUMOR 6.56 1:Recurred/Progressed MISSING MISSING TCGA-61-2102-01 IIIC G3 -TCGA-61-2104 53.23 0:LIVING COMPLETE RESPONSE 76.75 1:Recurred/Progressed 55.21 MISSING TCGA-61-2104-01 IIC G2 No Macroscopic disease -TCGA-61-2109 40.8 1:DECEASED WITH TUMOR 20.82 1:Recurred/Progressed 15.44 12.4 Sensitive TCGA-61-2109-01 IIIC G3 >20mm -TCGA-61-2110 56.75 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 44.52 1:Recurred/Progressed 7.11 1.7 Resistant TCGA-61-2110-01 IIIC No Macroscopic disease -TCGA-61-2111 61.68 0:LIVING COMPLETE RESPONSE WITH TUMOR 125.54 1:Recurred/Progressed 72.46 68 Sensitive TCGA-61-2111-01 IV G3 -TCGA-61-2113 54.01 1:DECEASED 22.39 1:Recurred/Progressed 9.77 4.74 Resistant TCGA-61-2113-01 IIC G3 \ No newline at end of file diff --git a/core/src/test/resources/clinical_data_PATIENT.txt b/core/src/test/resources/clinical_data_PATIENT.txt deleted file mode 100644 index 4db7766e217..00000000000 --- a/core/src/test/resources/clinical_data_PATIENT.txt +++ /dev/null @@ -1,493 +0,0 @@ -#PATIENT_ID AGE OS_STATUS PRIMARYTHERAPYOUTCOMESUCCESS PERSONNEOPLASMCANCERSTATUS OS_MONTHS DFS_STATUS DFS_MONTHS PLATINUMFREEINTERVAL (MOS)* PLATINUMSTATUS -#Patient Identfier Age at Diagnosis Overall Survival Status Primary Therapy Outcome Success Person Neoplasm Cancer Status Overall Survival (Months) Disease Free Status Disease Free Status (Months) PlatinumFreeInterval (mos)* Platinum Status -#STRING NUMBER STRING STRING STRING STRING STRING STRING STRING STRING -#1 1 1 1 1 1 1 1 1 1 -PATIENT_ID AGE OS_STATUS PRIMARYTHERAPYOUTCOMESUCCESS PERSONNEOPLASMCANCERSTATUS OS_MONTHS DFS_STATUS DFS_MONTHS PLATINUMFREEINTERVAL (MOS)* PLATINUMSTATUS -TCGA-A1-A0SB 79.04 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.8 1:Recurred/Progressed 15.05 9.6 Sensitive -TCGA-A1-A0SC 70.64 1:DECEASED WITH TUMOR 40.89 1:Recurred/Progressed 12.95 6.92 Sensitive -TCGA-A1-A0SI 55.53 0:LIVING COMPLETE RESPONSE TUMOR FREE 49.02 0:DiseaseFree 49.02 MISSING -TCGA-A1-A0SE 78.42 DECEASED WITH TUMOR 2.03 1:Recurred/Progressed MISSING MISSING -TCGA-04-1338 78.87 0:LIVING WITH TUMOR 46.49 Recurred/Progressed 12.46 5.8 Resistant -TCGA-04-1341 85.52 0:LIVING 0:DiseaseFree MISSING MISSING -TCGA-04-1342 80.82 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 18.46 1:Recurred/Progressed MISSING MISSING -TCGA-04-1343 72.41 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 11.84 1:Recurred/Progressed MISSING MISSING -TCGA-04-1346 73.6 0:LIVING COMPLETE RESPONSE TUMOR FREE 65.31 0:DiseaseFree 65.31 MISSING -TCGA-04-1347 81.36 0:LIVING COMPLETE RESPONSE TUMOR FREE 62.89 0:DiseaseFree 62.89 57.4 Sensitive -TCGA-04-1348 44.48 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.62 1:Recurred/Progressed 18.82 12.8 Sensitive -TCGA-04-1349 69.06 1:DECEASED COMPLETE RESPONSE WITH TUMOR 21.64 1:Recurred/Progressed 14.07 1.5 Resistant -TCGA-04-1350 46.41 1:DECEASED STABLE DISEASE WITH TUMOR 63.8 1:Recurred/Progressed 3.64 MISSING -TCGA-04-1356 62.61 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 49.15 1:Recurred/Progressed 5.11 MISSING -TCGA-04-1357 52.05 0:LIVING 0:DiseaseFree MISSING MISSING -TCGA-04-1361 57.15 0:LIVING STABLE DISEASE 32.43 1:Recurred/Progressed 30.36 MISSING -TCGA-04-1362 59.58 1:DECEASED WITH TUMOR 44.2 1:Recurred/Progressed 7.31 1.7 Resistant -TCGA-04-1364 61.08 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 33.61 1:Recurred/Progressed 9.48 3.3 Resistant -TCGA-04-1365 87.47 0:LIVING COMPLETE RESPONSE WITH TUMOR 76.33 1:Recurred/Progressed 43.54 37.4 Sensitive -TCGA-04-1367 50.89 0:LIVING COMPLETE RESPONSE TUMOR FREE 71.28 0:DiseaseFree 71.28 64.9 Sensitive -TCGA-04-1514 45.82 1:DECEASED COMPLETE RESPONSE TUMOR FREE 56.39 1:Recurred/Progressed 40.03 34 Sensitive -TCGA-04-1517 79.57 1:DECEASED COMPLETE RESPONSE WITH TUMOR 19.93 1:Recurred/Progressed 11.44 6.7 Sensitive -TCGA-04-1519 48.39 MISSING MISSING -TCGA-04-1525 47.86 1:DECEASED COMPLETE RESPONSE WITH TUMOR 38.26 1:Recurred/Progressed 6.95 0.9 Resistant -TCGA-04-1530 68.53 1:DECEASED COMPLETE RESPONSE WITH TUMOR 118.75 1:Recurred/Progressed 11.48 6.4 Sensitive -TCGA-04-1536 60.11 1:DECEASED WITH TUMOR 28.98 1:Recurred/Progressed 16.33 8.7 Sensitive -TCGA-04-1542 52.78 1:DECEASED COMPLETE RESPONSE WITH TUMOR 83.97 1:Recurred/Progressed 33.93 27.6 Sensitive -TCGA-04-1638 57.5 1:DECEASED TUMOR FREE 55.25 1:Recurred/Progressed 9.77 3.5 Resistant -TCGA-04-1646 60.84 1:DECEASED WITH TUMOR 27.8 1:Recurred/Progressed 16.66 8.8 Sensitive -TCGA-04-1648 57.84 1:DECEASED 28.56 1:Recurred/Progressed 13.51 8.6 Sensitive -TCGA-04-1649 74.42 0:LIVING 64.46 1:Recurred/Progressed 54.82 MISSING -TCGA-04-1651 53.78 1:DECEASED 36.07 1:Recurred/Progressed 32.39 27.6 Sensitive -TCGA-04-1652 76.98 1:DECEASED COMPLETE RESPONSE WITH TUMOR 31.87 1:Recurred/Progressed 28.95 22.5 Sensitive -TCGA-04-1654 69.61 1:DECEASED 46.85 1:Recurred/Progressed 25.77 24.8 Sensitive -TCGA-04-1655 49.28 1:DECEASED 45.21 1:Recurred/Progressed 26.85 22.3 Sensitive -TCGA-09-0364 80.17 1:DECEASED COMPLETE RESPONSE WITH TUMOR 29.08 1:Recurred/Progressed 12.95 6.8 Sensitive -TCGA-09-0366 56 1:DECEASED STABLE DISEASE WITH TUMOR 57.57 1:Recurred/Progressed 6.2 2.5 Resistant -TCGA-09-0367 67.05 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 17.9 1:Recurred/Progressed MISSING MISSING -TCGA-09-0369 56.73 1:DECEASED COMPLETE RESPONSE WITH TUMOR 35.44 1:Recurred/Progressed 8.95 5.8 Resistant -TCGA-09-1659 51.32 1:DECEASED STABLE DISEASE WITH TUMOR 9.93 1:Recurred/Progressed MISSING MISSING -TCGA-09-1661 75.38 1:DECEASED STABLE DISEASE WITH TUMOR 37.41 1:Recurred/Progressed MISSING MISSING -TCGA-09-1662 58.21 1:DECEASED COMPLETE RESPONSE WITH TUMOR 89.08 1:Recurred/Progressed 34.3 29.7 Sensitive -TCGA-09-1665 74 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.48 1:Recurred/Progressed 15.34 8.5 Sensitive -TCGA-09-1666 57.72 0:LIVING COMPLETE RESPONSE WITH TUMOR 57.41 1:Recurred/Progressed 15.74 10.1 Sensitive -TCGA-09-1667 61.11 0:LIVING COMPLETE RESPONSE WITH TUMOR 61.7 1:Recurred/Progressed 15.08 11.3 Sensitive -TCGA-09-1668 57.45 0:LIVING COMPLETE RESPONSE WITH TUMOR 55.21 1:Recurred/Progressed MISSING MISSING -TCGA-09-1669 54.94 0:LIVING COMPLETE RESPONSE WITH TUMOR 30.39 1:Recurred/Progressed MISSING MISSING -TCGA-09-1670 58.04 0:LIVING COMPLETE RESPONSE WITH TUMOR 16.69 1:Recurred/Progressed 16.69 12.1 Sensitive -TCGA-09-1673 50.96 0:LIVING WITH TUMOR 3.02 1:Recurred/Progressed MISSING MISSING -TCGA-09-1674 79.12 0:LIVING COMPLETE RESPONSE WITH TUMOR 8.52 1:Recurred/Progressed MISSING MISSING -TCGA-09-2044 77.34 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.1 0:DiseaseFree 6.1 1.07 Tooearly -TCGA-09-2045 50.1 1:DECEASED STABLE DISEASE WITH TUMOR 35.05 1:Recurred/Progressed 20.69 12.72 Sensitive -TCGA-09-2048 63.13 1:DECEASED STABLE DISEASE WITH TUMOR 4.49 1:Recurred/Progressed MISSING MISSING -TCGA-09-2049 64.14 0:LIVING COMPLETE RESPONSE WITH TUMOR 112.07 1:Recurred/Progressed 31.21 25.51 Sensitive -TCGA-09-2050 65.72 0:LIVING COMPLETE RESPONSE TUMOR FREE 70.92 0:DiseaseFree 70.92 67.28 Sensitive -TCGA-09-2051 42.88 0:LIVING COMPLETE RESPONSE TUMOR FREE 62.92 1:Recurred/Progressed 19.11 13.95 Sensitive -TCGA-09-2053 72.42 0:LIVING COMPLETE RESPONSE TUMOR FREE 39.64 0:DiseaseFree 39.64 35.3 Sensitive -TCGA-09-2054 58.32 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 20.85 1:Recurred/Progressed MISSING MISSING -TCGA-09-2056 62.64 0:LIVING COMPLETE RESPONSE TUMOR FREE 12.43 0:DiseaseFree 12.43 7.6 Sensitive -TCGA-10-0926 63.85 1:DECEASED COMPLETE RESPONSE WITH TUMOR 25.84 1:Recurred/Progressed 9.41 4.8 Resistant -TCGA-10-0927 65.7 1:DECEASED COMPLETE RESPONSE WITH TUMOR 81.64 1:Recurred/Progressed 32.82 28.9 Sensitive -TCGA-10-0928 71.41 1:DECEASED WITH TUMOR 18.43 1:Recurred/Progressed MISSING MISSING -TCGA-10-0930 70.51 1:DECEASED COMPLETE RESPONSE WITH TUMOR 34.1 1:Recurred/Progressed 22.3 18.2 Sensitive -TCGA-10-0931 44.55 1:DECEASED COMPLETE RESPONSE WITH TUMOR 32.79 1:Recurred/Progressed 9.84 5.7 Resistant -TCGA-10-0933 77.9 1:DECEASED COMPLETE RESPONSE WITH TUMOR 14.62 1:Recurred/Progressed 11.67 7.3 Sensitive -TCGA-10-0934 50.96 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 6.66 1:Recurred/Progressed 3.61 1.8 Resistant -TCGA-10-0935 68.76 1:DECEASED WITH TUMOR 35.31 1:Recurred/Progressed MISSING MISSING -TCGA-10-0936 69.74 1:DECEASED PARTIAL RESPONSE WITH TUMOR 36.82 1:Recurred/Progressed MISSING MISSING -TCGA-10-0937 44.44 1:DECEASED COMPLETE RESPONSE WITH TUMOR 19.93 1:Recurred/Progressed 7.7 2.9 Resistant -TCGA-10-0938 80.98 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 20.85 1:Recurred/Progressed 11.87 5.6 Resistant -TCGA-13-0714 55.1 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 6.1 1:Recurred/Progressed 3.51 MISSING -TCGA-13-0717 54.91 1:DECEASED COMPLETE RESPONSE WITH TUMOR 24.52 1:Recurred/Progressed 9.64 3.8 Resistant -TCGA-13-0720 48.76 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.43 1:Recurred/Progressed 9.57 3.7 Resistant -TCGA-13-0723 63.27 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 39.48 1:Recurred/Progressed 6.89 0.3 Resistant -TCGA-13-0724 72.26 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 1.57 1:Recurred/Progressed 1.57 0.3 Resistant -TCGA-13-0725 44.09 1:DECEASED COMPLETE RESPONSE WITH TUMOR 12.1 1:Recurred/Progressed 5.97 -0.8 Resistant -TCGA-13-0726 55.16 1:DECEASED COMPLETE RESPONSE WITH TUMOR 31.08 1:Recurred/Progressed 12.85 7.3 Sensitive -TCGA-13-0727 71.74 1:DECEASED COMPLETE RESPONSE WITH TUMOR 15.15 1:Recurred/Progressed 8.3 4.3 Resistant -TCGA-13-0730 71.55 1:DECEASED WITH TUMOR 16.82 1:Recurred/Progressed MISSING MISSING -TCGA-13-0751 44.67 1:DECEASED COMPLETE RESPONSE WITH TUMOR 55.02 1:Recurred/Progressed 21.41 12.7 Sensitive -TCGA-13-0755 75.17 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 2.46 1:Recurred/Progressed 1.11 -0.2 Resistant -TCGA-13-0757 71.23 1:DECEASED COMPLETE RESPONSE WITH TUMOR 11.15 1:Recurred/Progressed 9.61 0.8 Resistant -TCGA-13-0760 63.23 1:DECEASED 10.1 MISSING MISSING MISSING -TCGA-13-0761 51.22 0:LIVING COMPLETE RESPONSE WITH TUMOR 33.97 1:Recurred/Progressed 13.87 6.7 Sensitive -TCGA-13-0762 65.64 0:LIVING COMPLETE RESPONSE TUMOR FREE 32.16 0:DiseaseFree 32.16 27.6 Sensitive -TCGA-13-0764 63.01 0:LIVING PARTIAL RESPONSE WITH TUMOR 29.84 1:Recurred/Progressed 7.8 3.6 Resistant -TCGA-13-0765 50.89 0:LIVING COMPLETE RESPONSE WITH TUMOR 28.49 1:Recurred/Progressed 21.9 16.6 Sensitive -TCGA-13-0766 42.66 0:LIVING COMPLETE RESPONSE WITH TUMOR 21.34 1:Recurred/Progressed 20.59 14.6 Sensitive -TCGA-13-0768 73.97 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.39 0:DiseaseFree 8.39 3.6 Tooearly -TCGA-13-0791 58.57 0:LIVING COMPLETE RESPONSE WITH TUMOR 38.82 1:Recurred/Progressed 9.21 4.6 Resistant -TCGA-13-0792 40.35 0:LIVING COMPLETE RESPONSE WITH TUMOR 36.62 1:Recurred/Progressed 26.75 21.7 Sensitive -TCGA-13-0793 40.29 0:LIVING COMPLETE RESPONSE WITH TUMOR 28.62 1:Recurred/Progressed 11.51 6.3 Sensitive -TCGA-13-0794 60.12 0:LIVING COMPLETE RESPONSE WITH TUMOR 30.26 1:Recurred/Progressed 27.7 23.4 Sensitive -TCGA-13-0795 66.94 0:LIVING COMPLETE RESPONSE WITH TUMOR 18.56 1:Recurred/Progressed 9.7 4 Resistant -TCGA-13-0797 49.45 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.69 0:DiseaseFree 8.69 3.9 Tooearly -TCGA-13-0799 44.3 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.77 0:DiseaseFree 7.77 3 Tooearly -TCGA-13-0800 52.29 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.1 0:DiseaseFree 8.1 3.5 Tooearly -TCGA-13-0801 46.06 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.26 0:DiseaseFree 8.26 3.5 Tooearly -TCGA-13-0802 79.66 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.16 0:DiseaseFree 8.16 2 Tooearly -TCGA-13-0803 81.33 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.7 1:Recurred/Progressed 11.02 3.7 Resistant -TCGA-13-0804 74.03 1:DECEASED COMPLETE RESPONSE WITH TUMOR 35.18 1:Recurred/Progressed 10.79 5.5 Resistant -TCGA-13-0805 57.57 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 35.21 1:Recurred/Progressed 5.77 0.9 Resistant -TCGA-13-0807 54.49 1:DECEASED 13.57 MISSING MISSING MISSING -TCGA-13-0883 61.36 1:DECEASED COMPLETE RESPONSE WITH TUMOR 68.72 1:Recurred/Progressed 26.82 15.4 Sensitive -TCGA-13-0884 39.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 105.31 1:Recurred/Progressed 39.44 31 Sensitive -TCGA-13-0885 70.58 0:LIVING COMPLETE RESPONSE 91.15 0:DiseaseFree 91.15 84.4 Sensitive -TCGA-13-0886 67.73 0:LIVING COMPLETE RESPONSE TUMOR FREE 74.07 0:DiseaseFree 74.07 65.6 Sensitive -TCGA-13-0887 42.93 1:DECEASED COMPLETE RESPONSE WITH TUMOR 66.46 1:Recurred/Progressed 16.82 8.1 Sensitive -TCGA-13-0888 78.08 0:LIVING PARTIAL RESPONSE TUMOR FREE 70.2 0:DiseaseFree 70.2 62.8 Sensitive -TCGA-13-0889 75.82 0:LIVING COMPLETE RESPONSE TUMOR FREE 61.64 0:DiseaseFree 61.64 56.5 Sensitive -TCGA-13-0890 56.9 0:LIVING COMPLETE RESPONSE TUMOR FREE 67.8 0:DiseaseFree 67.8 59.97 Sensitive -TCGA-13-0891 73.74 0:LIVING COMPLETE RESPONSE WITH TUMOR 67.84 1:Recurred/Progressed 23.97 19 Sensitive -TCGA-13-0893 48.31 1:DECEASED PARTIAL RESPONSE WITH TUMOR 41.31 1:Recurred/Progressed 13.18 5.8 Resistant -TCGA-13-0894 53.33 1:DECEASED COMPLETE RESPONSE WITH TUMOR 49.48 1:Recurred/Progressed 18.52 7.7 Sensitive -TCGA-13-0897 54.5 0:LIVING COMPLETE RESPONSE WITH TUMOR 57.31 1:Recurred/Progressed 18.13 13.6 Sensitive -TCGA-13-0899 60.36 0:LIVING COMPLETE RESPONSE WITH TUMOR 56 1:Recurred/Progressed 17.93 13.8 Sensitive -TCGA-13-0900 59.47 0:LIVING COMPLETE RESPONSE TUMOR FREE 56.59 0:DiseaseFree 56.59 51.7 Sensitive -TCGA-13-0901 42.01 0:LIVING COMPLETE RESPONSE WITH TUMOR 19.31 1:Recurred/Progressed 12.79 7.4 Sensitive -TCGA-13-0903 43.03 0:LIVING COMPLETE RESPONSE WITH TUMOR 47.25 1:Recurred/Progressed MISSING MISSING -TCGA-13-0904 63.86 0:LIVING PARTIAL RESPONSE WITH TUMOR 47.18 1:Recurred/Progressed 9.77 2.6 Resistant -TCGA-13-0905 51.39 0:LIVING COMPLETE RESPONSE TUMOR FREE 47.7 0:DiseaseFree 47.7 40.5 Sensitive -TCGA-13-0906 50.36 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.82 0:DiseaseFree 44.82 40.1 Sensitive -TCGA-13-0908 58.69 0:LIVING COMPLETE RESPONSE WITH TUMOR 44.72 1:Recurred/Progressed 18.1 10.1 Sensitive -TCGA-13-0910 58.91 0:LIVING COMPLETE RESPONSE TUMOR FREE 36.03 0:DiseaseFree 36.03 27.6 Sensitive -TCGA-13-0911 55.57 0:LIVING PARTIAL RESPONSE WITH TUMOR 27.41 1:Recurred/Progressed 8.92 3 Resistant -TCGA-13-0912 58.7 0:LIVING COMPLETE RESPONSE WITH TUMOR 33.97 1:Recurred/Progressed 15.34 10.6 Sensitive -TCGA-13-0913 53.62 0:LIVING COMPLETE RESPONSE WITH TUMOR 29.9 1:Recurred/Progressed 28.56 23.4 Sensitive -TCGA-13-0916 49.83 0:LIVING COMPLETE RESPONSE TUMOR FREE 21.08 0:DiseaseFree 21.08 15.8 Sensitive -TCGA-13-0919 52.98 0:LIVING COMPLETE RESPONSE TUMOR FREE 14.85 0:DiseaseFree 14.85 9.6 Sensitive -TCGA-13-0920 65.93 0:LIVING COMPLETE RESPONSE WITH TUMOR 13.77 1:Recurred/Progressed 9.74 4.8 Resistant -TCGA-13-0921 72.89 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.62 0:DiseaseFree 4.62 0 Tooearly -TCGA-13-0923 74.19 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.39 0:DiseaseFree 6.39 1.4 Tooearly -TCGA-13-0924 45.7 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.67 0:DiseaseFree 5.67 1.4 Tooearly -TCGA-13-1403 48.48 0:LIVING COMPLETE RESPONSE TUMOR FREE 10.85 0:DiseaseFree 10.85 6.2 Sensitive -TCGA-13-1404 48.72 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.59 0:DiseaseFree 6.59 -2.5 Tooearly -TCGA-13-1405 49.91 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.34 0:DiseaseFree 7.34 2.5 Tooearly -TCGA-13-1407 51.77 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.03 0:DiseaseFree 6.03 0 Tooearly -TCGA-13-1408 59.27 0:LIVING PARTIAL RESPONSE WITH TUMOR 5.9 1:Recurred/Progressed MISSING MISSING -TCGA-13-1409 73.63 0:LIVING WITH TUMOR 5.54 1:Recurred/Progressed MISSING MISSING -TCGA-13-1410 57.4 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.69 0:DiseaseFree 4.69 0.5 Tooearly -TCGA-13-1411 81.84 0:LIVING PARTIAL RESPONSE WITH TUMOR 4.2 1:Recurred/Progressed MISSING MISSING -TCGA-13-1412 41.42 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.31 0:DiseaseFree 5.31 -1.2 Tooearly -TCGA-13-1477 49.68 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 53.67 1:Recurred/Progressed 6.89 1 Resistant -TCGA-13-1481 76.43 1:DECEASED COMPLETE RESPONSE TUMOR FREE 86.82 0:DiseaseFree 86.82 79.1 Sensitive -TCGA-13-1482 52.61 1:DECEASED PARTIAL RESPONSE WITH TUMOR 60.69 1:Recurred/Progressed 18.89 14.8 Sensitive -TCGA-13-1483 61.28 1:DECEASED PARTIAL RESPONSE WITH TUMOR 28.49 1:Recurred/Progressed 8.89 1.9 Resistant -TCGA-13-1484 62.34 0:LIVING COMPLETE RESPONSE WITH TUMOR 95.9 1:Recurred/Progressed 14.39 10.1 Sensitive -TCGA-13-1485 48.36 1:DECEASED PARTIAL RESPONSE WITH TUMOR 20.3 1:Recurred/Progressed 5.25 0.7 Resistant -TCGA-13-1487 74.45 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.33 1:Recurred/Progressed 13.51 6.7 Sensitive -TCGA-13-1488 59.52 1:DECEASED COMPLETE RESPONSE WITH TUMOR 70.62 1:Recurred/Progressed 11.51 6 Sensitive -TCGA-13-1489 70.6 0:LIVING COMPLETE RESPONSE WITH TUMOR 82.66 1:Recurred/Progressed 26.43 17.5 Sensitive -TCGA-13-1491 55.52 1:DECEASED PARTIAL RESPONSE WITH TUMOR 52.2 1:Recurred/Progressed 16.56 11.7 Sensitive -TCGA-13-1492 66.7 0:LIVING COMPLETE RESPONSE TUMOR FREE 72.89 0:DiseaseFree 72.89 65.4 Sensitive -TCGA-13-1494 43.94 0:LIVING COMPLETE RESPONSE WITH TUMOR 36.59 1:Recurred/Progressed 21.25 16.8 Sensitive -TCGA-13-1495 60.4 0:LIVING COMPLETE RESPONSE WITH TUMOR 49.08 1:Recurred/Progressed 32.03 27.5 Sensitive -TCGA-13-1496 65.8 1:DECEASED 3.41 MISSING MISSING 3.2 MISSING -TCGA-13-1497 48.02 0:LIVING COMPLETE RESPONSE WITH TUMOR 54.16 1:Recurred/Progressed 26.66 20.6 Sensitive -TCGA-13-1498 73.48 0:LIVING PARTIAL RESPONSE WITH TUMOR 37.51 1:Recurred/Progressed 17.48 10.4 Sensitive -TCGA-13-1499 56.71 0:LIVING COMPLETE RESPONSE WITH TUMOR 37.28 1:Recurred/Progressed 18.1 13 Sensitive -TCGA-13-1500 71.7 1:DECEASED PARTIAL RESPONSE WITH TUMOR 13.93 1:Recurred/Progressed 8.3 1 Resistant -TCGA-13-1501 50.49 0:LIVING PARTIAL RESPONSE WITH TUMOR 31.57 1:Recurred/Progressed 11.67 6.9 Sensitive -TCGA-13-1504 68.52 0:LIVING COMPLETE RESPONSE TUMOR FREE 16.52 0:DiseaseFree 16.52 7.3 Sensitive -TCGA-13-1505 63.67 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.2 0:DiseaseFree 4.2 -1.37 Tooearly -TCGA-13-1506 45.84 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.39 0:DiseaseFree 4.39 -1.8 Tooearly -TCGA-13-1507 77.93 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.75 0:DiseaseFree 4.75 -0.5 Tooearly -TCGA-13-1509 64.34 0:LIVING COMPLETE RESPONSE TUMOR FREE 4.07 0:DiseaseFree 4.07 0 Tooearly -TCGA-13-1510 62.21 0:LIVING TUMOR FREE 2.56 0:DiseaseFree 2.56 -3.21 Tooearly -TCGA-13-1511 52.77 0:LIVING PARTIAL RESPONSE WITH TUMOR 3.74 1:Recurred/Progressed MISSING MISSING -TCGA-13-1512 49.75 0:LIVING 2.33 0:DiseaseFree 2.33 0 Tooearly -TCGA-13-2060 51.05 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.56 0:DiseaseFree 8.56 3.82 Tooearly -TCGA-20-0987 61.2 1:DECEASED WITH TUMOR 21.31 1:Recurred/Progressed 12.82 MISSING -TCGA-20-0990 74.59 0:LIVING WITH TUMOR 24.07 1:Recurred/Progressed 26.72 20.8 Sensitive -TCGA-20-0991 78.69 0:LIVING COMPLETE RESPONSE TUMOR FREE 25.25 0:DiseaseFree 25.25 MISSING -TCGA-20-1682 56.39 0:LIVING COMPLETE RESPONSE TUMOR FREE 27.41 0:DiseaseFree 27.41 22.8 Sensitive -TCGA-20-1683 65.77 0:LIVING STABLE DISEASE TUMOR FREE 25.31 1:Recurred/Progressed 20.26 15.9 Sensitive -TCGA-20-1684 51.38 0:LIVING COMPLETE RESPONSE TUMOR FREE 19.02 0:DiseaseFree 19.02 15.1 Sensitive -TCGA-20-1685 45.88 0:LIVING COMPLETE RESPONSE TUMOR FREE 16.62 0:DiseaseFree 16.62 12 Sensitive -TCGA-20-1686 75.58 0:LIVING COMPLETE RESPONSE TUMOR FREE 2.92 0:DiseaseFree 2.92 -1.4 Tooearly -TCGA-20-1687 46.47 0:LIVING COMPLETE RESPONSE TUMOR FREE 2.62 0:DiseaseFree 2.62 -2.9 Tooearly -TCGA-23-1021 45.16 1:DECEASED PARTIAL RESPONSE WITH TUMOR 47.41 1:Recurred/Progressed MISSING MISSING -TCGA-23-1022 67.94 1:DECEASED COMPLETE RESPONSE WITH TUMOR 49.54 1:Recurred/Progressed 14.75 9.5 Sensitive -TCGA-23-1023 65.27 0:LIVING COMPLETE RESPONSE WITH TUMOR 40.43 1:Recurred/Progressed 16.07 12.07 Sensitive -TCGA-23-1024 52.19 0:LIVING COMPLETE RESPONSE TUMOR FREE 15.34 0:DiseaseFree 15.34 5.4 Tooearly -TCGA-23-1026 45.05 0:LIVING COMPLETE RESPONSE WITH TUMOR 26.75 1:Recurred/Progressed 26.13 22.6 Sensitive -TCGA-23-1027 48.19 1:DECEASED PROGRESSIVE DISEASE 31.97 1:Recurred/Progressed 3.74 -0.6 Resistant -TCGA-23-1028 43.88 0:LIVING COMPLETE RESPONSE WITH TUMOR 49.28 1:Recurred/Progressed 4.36 0.8 Resistant -TCGA-23-1029 46.27 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.79 0:DiseaseFree 8.79 6.2 Sensitive -TCGA-23-1030 64.15 0:LIVING COMPLETE RESPONSE TUMOR FREE 29.02 1:Recurred/Progressed 17.8 12.5 Sensitive -TCGA-23-1031 60.89 1:DECEASED PARTIAL RESPONSE WITH TUMOR 18.82 1:Recurred/Progressed MISSING MISSING -TCGA-23-1032 73.19 1:DECEASED WITH TUMOR 2.75 1:Recurred/Progressed MISSING MISSING -TCGA-23-1107 59.07 1:DECEASED WITH TUMOR 0.3 1:Recurred/Progressed MISSING MISSING -TCGA-23-1109 63.02 1:DECEASED PARTIAL RESPONSE WITH TUMOR 51.21 1:Recurred/Progressed 32.36 MISSING -TCGA-23-1110 42.15 0:LIVING COMPLETE RESPONSE TUMOR FREE 54.36 1:Recurred/Progressed 10.69 7.1 Sensitive -TCGA-23-1111 63.48 0:LIVING 3.21 0:DiseaseFree 3.21 -1 Tooearly -TCGA-23-1113 48.74 1:DECEASED PARTIAL RESPONSE WITH TUMOR 31.11 1:Recurred/Progressed MISSING MISSING -TCGA-23-1114 55.92 1:DECEASED COMPLETE RESPONSE WITH TUMOR 68.49 1:Recurred/Progressed 20.79 14.8 Sensitive -TCGA-23-1116 83.46 0:LIVING 4.56 0:DiseaseFree 4.56 -1.6 Tooearly -TCGA-23-1117 42.99 1:DECEASED COMPLETE RESPONSE WITH TUMOR 33.21 1:Recurred/Progressed 13.7 4.1 Resistant -TCGA-23-1118 45.12 0:LIVING COMPLETE RESPONSE TUMOR FREE 85.77 0:DiseaseFree 85.77 79.5 Sensitive -TCGA-23-1119 64.89 0:LIVING COMPLETE RESPONSE TUMOR FREE 129.61 1:Recurred/Progressed 110.75 106.9 Sensitive -TCGA-23-1120 60.68 0:LIVING 4.26 0:DiseaseFree 4.26 -0.5 Tooearly -TCGA-23-1121 52.01 0:LIVING 6.36 0:DiseaseFree 6.36 0 Tooearly -TCGA-23-1122 53.53 1:DECEASED COMPLETE RESPONSE WITH TUMOR 38.98 1:Recurred/Progressed 14.66 6.7 Sensitive -TCGA-23-1123 59.04 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 33.38 1:Recurred/Progressed MISSING MISSING -TCGA-23-1124 63.03 1:DECEASED COMPLETE RESPONSE WITH TUMOR 57.97 1:Recurred/Progressed 21.02 14.7 Sensitive -TCGA-23-1809 63.32 0:LIVING 0.52 0:DiseaseFree 0.52 -3.1 Tooearly -TCGA-23-2072 58.97 1:DECEASED COMPLETE RESPONSE WITH TUMOR 24.89 1:Recurred/Progressed 15.61 10.6 Sensitive -TCGA-23-2077 45.35 0:LIVING COMPLETE RESPONSE TUMOR FREE 115.57 1:Recurred/Progressed 40.39 35.4 Sensitive -TCGA-23-2078 66.36 0:LIVING COMPLETE RESPONSE TUMOR FREE 87.25 0:DiseaseFree 87.25 82.6 Sensitive -TCGA-23-2079 46.91 0:LIVING COMPLETE RESPONSE TUMOR FREE 91.41 1:Recurred/Progressed 9.28 5.2 Resistant -TCGA-23-2081 49.76 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 76.79 1:Recurred/Progressed MISSING MISSING -TCGA-23-2084 45.19 1:DECEASED COMPLETE RESPONSE WITH TUMOR 49.7 1:Recurred/Progressed 20.3 15.2 Sensitive -TCGA-24-0966 78.14 0:LIVING STABLE DISEASE WITH TUMOR 7.8 1:Recurred/Progressed MISSING MISSING -TCGA-24-0968 59.34 1:DECEASED PARTIAL RESPONSE WITH TUMOR 19.77 1:Recurred/Progressed 17.7 13.57 Sensitive -TCGA-24-0970 63.77 1:DECEASED PARTIAL RESPONSE WITH TUMOR 11.61 1:Recurred/Progressed 9.18 -1 Resistant -TCGA-24-0975 58.68 1:DECEASED PARTIAL RESPONSE WITH TUMOR 21.74 1:Recurred/Progressed 9.87 MISSING -TCGA-24-0979 53.68 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.44 1:Recurred/Progressed 14.03 8 Sensitive -TCGA-24-0980 53.64 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 7.64 1:Recurred/Progressed 4.75 -1.1 Resistant -TCGA-24-0982 77.26 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.26 1:Recurred/Progressed 4.98 0.85 Resistant -TCGA-24-1103 50.91 1:DECEASED COMPLETE RESPONSE WITH TUMOR 53.93 1:Recurred/Progressed 22.2 17.96 Sensitive -TCGA-24-1104 56.22 1:DECEASED COMPLETE RESPONSE WITH TUMOR 63.57 1:Recurred/Progressed 31.61 25.61 Sensitive -TCGA-24-1105 36.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 47.28 1:Recurred/Progressed 15.41 9.48 Sensitive -TCGA-24-1413 51.63 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.3 0:DiseaseFree 6.3 1.6 Tooearly -TCGA-24-1416 34.99 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.36 0:DiseaseFree 6.36 0.7 Tooearly -TCGA-24-1417 54.18 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.8 0:DiseaseFree 7.8 2.7 Tooearly -TCGA-24-1418 68.06 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.93 0:DiseaseFree 7.93 2.7 Tooearly -TCGA-24-1419 62.08 0:LIVING COMPLETE RESPONSE TUMOR FREE 7.84 0:DiseaseFree 7.84 3.8 Tooearly -TCGA-24-1422 82.83 1:DECEASED 0.75 MISSING MISSING MISSING -TCGA-24-1423 61.04 0:LIVING COMPLETE RESPONSE TUMOR FREE 6.23 0:DiseaseFree 6.23 1.3 Tooearly -TCGA-24-1424 67.25 0:LIVING COMPLETE RESPONSE TUMOR FREE 6 0:DiseaseFree 6 2.1 Tooearly -TCGA-24-1425 45.93 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.93 0:DiseaseFree 5.93 1.1 Tooearly -TCGA-24-1426 43.69 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.34 0:DiseaseFree 5.34 0.61 Tooearly -TCGA-24-1427 58.69 0:LIVING PARTIAL RESPONSE WITH TUMOR 4.79 1:Recurred/Progressed MISSING MISSING -TCGA-24-1428 50.15 0:LIVING 3.67 0:DiseaseFree 3.67 MISSING -TCGA-24-1430 68.33 1:DECEASED COMPLETE RESPONSE WITH TUMOR 28.26 1:Recurred/Progressed 14.69 11.2 Sensitive -TCGA-24-1431 67.83 1:DECEASED WITH TUMOR 19.11 1:Recurred/Progressed 6.52 1.7 Resistant -TCGA-24-1434 59.75 1:DECEASED PARTIAL RESPONSE WITH TUMOR 18.62 1:Recurred/Progressed 11.05 3.6 Resistant -TCGA-24-1435 57.83 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.41 1:Recurred/Progressed 16.56 11.7 Sensitive -TCGA-24-1436 57.21 1:DECEASED PARTIAL RESPONSE WITH TUMOR 8.52 1:Recurred/Progressed MISSING MISSING -TCGA-24-1463 70.5 1:DECEASED COMPLETE RESPONSE WITH TUMOR 72.72 1:Recurred/Progressed 31.84 27.9 Sensitive -TCGA-24-1464 70.89 1:DECEASED WITH TUMOR 12.43 1:Recurred/Progressed 10.59 5.2 Resistant -TCGA-24-1466 74.81 1:DECEASED COMPLETE RESPONSE WITH TUMOR 45.02 1:Recurred/Progressed 16.1 11.4 Sensitive -TCGA-24-1467 51.1 1:DECEASED COMPLETE RESPONSE WITH TUMOR 105.7 1:Recurred/Progressed 41.05 37.42 Sensitive -TCGA-24-1469 71.06 0:LIVING COMPLETE RESPONSE TUMOR FREE 9.08 0:DiseaseFree 9.08 4.7 Tooearly -TCGA-24-1470 54.81 0:LIVING COMPLETE RESPONSE TUMOR FREE 3.41 0:DiseaseFree 3.41 0.7 Tooearly -TCGA-24-1471 60.5 0:LIVING 1.18 0:DiseaseFree 1.18 MISSING -TCGA-24-1474 57.27 1:DECEASED PARTIAL RESPONSE WITH TUMOR 22.13 1:Recurred/Progressed 10.85 6.9 Sensitive -TCGA-24-1544 71.62 1:DECEASED PARTIAL RESPONSE WITH TUMOR 26.89 1:Recurred/Progressed 21.08 14.5 Sensitive -TCGA-24-1545 69.75 1:DECEASED COMPLETE RESPONSE WITH TUMOR 57.21 1:Recurred/Progressed 28.23 19 Sensitive -TCGA-24-1546 46.93 1:DECEASED 64.1 MISSING MISSING MISSING -TCGA-24-1548 57.38 1:DECEASED COMPLETE RESPONSE WITH TUMOR 16.16 1:Recurred/Progressed 6.79 2.8 Resistant -TCGA-24-1549 58.72 1:DECEASED COMPLETE RESPONSE WITH TUMOR 56.43 1:Recurred/Progressed 34.16 MISSING -TCGA-24-1550 49.45 1:DECEASED COMPLETE RESPONSE WITH TUMOR 40.95 1:Recurred/Progressed 29.25 23.6 Sensitive -TCGA-24-1551 53.87 1:DECEASED COMPLETE RESPONSE WITH TUMOR 51.77 1:Recurred/Progressed 25.05 20.6 Sensitive -TCGA-24-1552 77.07 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.28 1:Recurred/Progressed 13.21 4.11 Resistant -TCGA-24-1553 53.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 57.93 1:Recurred/Progressed 18.13 13.1 Sensitive -TCGA-24-1555 50.42 1:DECEASED COMPLETE RESPONSE WITH TUMOR 88.26 1:Recurred/Progressed 51.7 MISSING -TCGA-24-1556 50.73 1:DECEASED COMPLETE RESPONSE WITH TUMOR 70.43 1:Recurred/Progressed 18 MISSING -TCGA-24-1557 49.16 1:DECEASED PARTIAL RESPONSE WITH TUMOR 39.77 1:Recurred/Progressed 14.66 5.5 Resistant -TCGA-24-1558 73.98 1:DECEASED PARTIAL RESPONSE WITH TUMOR 19.48 1:Recurred/Progressed 8.95 0.8 Resistant -TCGA-24-1560 51.15 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.97 1:Recurred/Progressed 4.69 0.8 Resistant -TCGA-24-1562 67.8 1:DECEASED COMPLETE RESPONSE WITH TUMOR 45.38 1:Recurred/Progressed 7.48 2.5 Resistant -TCGA-24-1563 66.5 1:DECEASED COMPLETE RESPONSE WITH TUMOR 47.57 1:Recurred/Progressed 12.98 8.3 Sensitive -TCGA-24-1564 67.58 1:DECEASED COMPLETE RESPONSE WITH TUMOR 25.8 1:Recurred/Progressed 7.25 3.4 Resistant -TCGA-24-1565 74.1 1:DECEASED PARTIAL RESPONSE WITH TUMOR 10.23 1:Recurred/Progressed 4.75 0.7 Resistant -TCGA-24-1567 54.36 1:DECEASED WITH TUMOR 17.18 1:Recurred/Progressed 10.98 5 Resistant -TCGA-24-1603 53.92 1:DECEASED COMPLETE RESPONSE WITH TUMOR 89.9 1:Recurred/Progressed 32.52 MISSING -TCGA-24-1604 67.04 1:DECEASED COMPLETE RESPONSE WITH TUMOR 88.1 1:Recurred/Progressed MISSING MISSING -TCGA-24-1614 57.52 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.2 1:Recurred/Progressed 21.11 15 Sensitive -TCGA-24-1616 56.95 1:DECEASED COMPLETE RESPONSE WITH TUMOR 38.13 1:Recurred/Progressed 13.28 7.9 Sensitive -TCGA-24-1842 49.94 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.3 0:DiseaseFree 8.3 -0.14 Tooearly -TCGA-24-1843 67.04 0:LIVING COMPLETE RESPONSE 3.48 0:DiseaseFree 3.48 -0.9 Tooearly -TCGA-24-1844 64.5 0:LIVING 3.7 0:DiseaseFree 3.7 -0.7 Tooearly -TCGA-24-1845 42.74 0:LIVING 3.8 0:DiseaseFree 3.8 -0.2 Tooearly -TCGA-24-1846 45.3 0:LIVING 4.36 0:DiseaseFree 4.36 -1.3 Tooearly -TCGA-24-1847 45.33 0:LIVING COMPLETE RESPONSE TUMOR FREE 10.75 0:DiseaseFree 10.75 0 Tooearly -TCGA-24-1849 80.97 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.74 0:DiseaseFree 5.74 1.2 Tooearly -TCGA-24-1850 72.24 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.48 0:DiseaseFree 5.48 1 Tooearly -TCGA-24-1920 74.09 0:LIVING COMPLETE RESPONSE TUMOR FREE 9.77 0:DiseaseFree 9.77 5 Tooearly -TCGA-24-1923 51.05 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.43 1:Recurred/Progressed 11.08 3.52 Resistant -TCGA-24-1924 65.21 1:DECEASED COMPLETE RESPONSE WITH TUMOR 30.13 1:Recurred/Progressed 10.49 5.13 Resistant -TCGA-24-1928 77.08 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 10.75 1:Recurred/Progressed 2.03 -1.9 Resistant -TCGA-24-1930 53.36 1:DECEASED COMPLETE RESPONSE WITH TUMOR 78 1:Recurred/Progressed 14.92 8.72 Sensitive -TCGA-24-2019 46.6 0:LIVING 4.85 0:DiseaseFree 4.85 MISSING -TCGA-24-2020 67.62 1:DECEASED COMPLETE RESPONSE WITH TUMOR 151.57 1:Recurred/Progressed 23.7 MISSING -TCGA-24-2023 54.52 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.72 1:Recurred/Progressed 35.05 MISSING -TCGA-24-2024 72.53 1:DECEASED COMPLETE RESPONSE WITH TUMOR 58 1:Recurred/Progressed 13.8 9.8 Sensitive -TCGA-24-2026 79.59 1:DECEASED WITH TUMOR 34.72 1:Recurred/Progressed MISSING MISSING -TCGA-24-2027 51.6 1:DECEASED COMPLETE RESPONSE WITH TUMOR 109.38 1:Recurred/Progressed 20.23 11.63 Sensitive -TCGA-24-2029 75.41 1:DECEASED COMPLETE RESPONSE WITH TUMOR 14.39 1:Recurred/Progressed 17.57 10.31 Sensitive -TCGA-24-2030 COMPLETE RESPONSE WITH TUMOR 1:Recurred/Progressed 21.18 16.95 Sensitive -TCGA-24-2033 1:DECEASED PARTIAL RESPONSE WITH TUMOR 18.43 1:Recurred/Progressed 11.51 3.77 Resistant -TCGA-24-2035 65.35 1:DECEASED PARTIAL RESPONSE WITH TUMOR 28.1 1:Recurred/Progressed 9.41 MISSING -TCGA-24-2036 50.91 1:DECEASED COMPLETE RESPONSE WITH TUMOR 63.84 1:Recurred/Progressed 29.97 24.87 Sensitive -TCGA-24-2038 68.38 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.36 1:Recurred/Progressed 38.33 MISSING -TCGA-24-2254 66.87 1:DECEASED COMPLETE RESPONSE WITH TUMOR 56.92 1:Recurred/Progressed 19.87 14.37 Sensitive -TCGA-24-2260 74.3 1:DECEASED COMPLETE RESPONSE 35.8 1:Recurred/Progressed 21.61 17.37 Sensitive -TCGA-24-2261 76.43 1:DECEASED WITH TUMOR 0.79 1:Recurred/Progressed MISSING MISSING -TCGA-24-2262 57.15 1:DECEASED WITH TUMOR 0.36 1:Recurred/Progressed MISSING MISSING -TCGA-24-2267 58.34 1:DECEASED COMPLETE RESPONSE WITH TUMOR 47.41 1:Recurred/Progressed MISSING MISSING -TCGA-24-2271 55.89 1:DECEASED WITH TUMOR 31.54 1:Recurred/Progressed 27.11 MISSING -TCGA-24-2280 74.95 0:LIVING COMPLETE RESPONSE WITH TUMOR 70.26 1:Recurred/Progressed 17.51 11.61 Sensitive -TCGA-24-2281 68.55 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.46 0:DiseaseFree 44.46 MISSING -TCGA-24-2288 70.77 1:DECEASED WITH TUMOR 0.82 1:Recurred/Progressed MISSING MISSING -TCGA-24-2289 69.02 1:DECEASED COMPLETE RESPONSE WITH TUMOR 67.18 1:Recurred/Progressed 18.62 12.52 Sensitive -TCGA-24-2290 56.24 1:DECEASED COMPLETE RESPONSE WITH TUMOR 36.13 1:Recurred/Progressed 10.62 6.66 Sensitive -TCGA-24-2293 27.21 PROGRESSIVE DISEASE 16.59 MISSING MISSING MISSING -TCGA-24-2297 56.13 1:DECEASED COMPLETE RESPONSE 55.7 MISSING MISSING MISSING -TCGA-24-2298 56.04 COMPLETE RESPONSE WITH TUMOR 1:Recurred/Progressed MISSING MISSING -TCGA-25-1312 69.96 1:DECEASED 1.02 MISSING MISSING MISSING -TCGA-25-1313 62.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 26.85 1:Recurred/Progressed 12.92 8 Sensitive -TCGA-25-1314 42.36 1:DECEASED PARTIAL RESPONSE WITH TUMOR 32.89 1:Recurred/Progressed 8.95 MISSING -TCGA-25-1315 50.04 1:DECEASED PARTIAL RESPONSE WITH TUMOR 51.9 1:Recurred/Progressed 5.02 0 Resistant -TCGA-25-1316 55.7 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 41.93 1:Recurred/Progressed 9.05 1.9 Resistant -TCGA-25-1317 66.3 1:DECEASED 2.23 MISSING MISSING MISSING -TCGA-25-1318 54.12 1:DECEASED PARTIAL RESPONSE WITH TUMOR 34.89 1:Recurred/Progressed 6.07 2.1 Resistant -TCGA-25-1319 73.39 1:DECEASED 64.82 1:Recurred/Progressed 23.93 MISSING -TCGA-25-1320 65.8 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 37.84 1:Recurred/Progressed 13.87 8 Sensitive -TCGA-25-1321 65.72 1:DECEASED COMPLETE RESPONSE WITH TUMOR 33.87 1:Recurred/Progressed 14.85 9 Sensitive -TCGA-25-1322 62.04 1:DECEASED WITH TUMOR 2.98 1:Recurred/Progressed MISSING MISSING -TCGA-25-1323 72.88 1:DECEASED COMPLETE RESPONSE WITH TUMOR 12.95 1:Recurred/Progressed 11.97 7.9 Sensitive -TCGA-25-1324 74.22 1:DECEASED 33.93 MISSING MISSING MISSING -TCGA-25-1325 77.21 1:DECEASED 32 MISSING MISSING MISSING -TCGA-25-1326 61.2 1:DECEASED PARTIAL RESPONSE WITH TUMOR 40.92 1:Recurred/Progressed 12.95 8 Sensitive -TCGA-25-1328 38.11 1:DECEASED PARTIAL RESPONSE WITH TUMOR 65.87 1:Recurred/Progressed 8 1 Resistant -TCGA-25-1329 76.97 1:DECEASED 14.98 MISSING MISSING MISSING -TCGA-25-1623 71.39 1:DECEASED COMPLETE RESPONSE WITH TUMOR 18.52 1:Recurred/Progressed 11.21 6.7 Sensitive -TCGA-25-1625 66.57 1:DECEASED STABLE DISEASE WITH TUMOR 27.54 1:Recurred/Progressed 17.25 MISSING -TCGA-25-1626 65.57 1:DECEASED PARTIAL RESPONSE WITH TUMOR 16.95 1:Recurred/Progressed 10.43 3.6 Resistant -TCGA-25-1627 73.38 1:DECEASED 12.92 MISSING MISSING MISSING -TCGA-25-1628 67.09 1:DECEASED STABLE DISEASE WITH TUMOR 20.52 1:Recurred/Progressed 9.38 3.5 Resistant -TCGA-25-1630 73.99 1:DECEASED COMPLETE RESPONSE 38.1 MISSING MISSING MISSING -TCGA-25-1631 73.12 1:DECEASED TUMOR FREE 0.3 0:DiseaseFree 0.3 MISSING -TCGA-25-1632 68.47 1:DECEASED COMPLETE RESPONSE WITH TUMOR 58.98 1:Recurred/Progressed 17.61 11 Sensitive -TCGA-25-1633 64.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 62 1:Recurred/Progressed 20.2 14.3 Sensitive -TCGA-25-1634 76.02 1:DECEASED COMPLETE RESPONSE WITH TUMOR 35.77 1:Recurred/Progressed 12.46 5.8 Resistant -TCGA-25-1635 71.78 1:DECEASED COMPLETE RESPONSE WITH TUMOR 51.9 1:Recurred/Progressed 20.13 12.5 Sensitive -TCGA-25-1870 59.04 1:DECEASED PARTIAL RESPONSE WITH TUMOR 14.89 1:Recurred/Progressed 7.93 MISSING -TCGA-25-1871 70.21 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 24.92 1:Recurred/Progressed 7.54 MISSING -TCGA-25-1877 81.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 23.93 1:Recurred/Progressed 18 MISSING -TCGA-25-1878 60.37 1:DECEASED COMPLETE RESPONSE WITH TUMOR 84.82 1:Recurred/Progressed 31.84 MISSING -TCGA-25-2042 60.62 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 12.98 1:Recurred/Progressed MISSING MISSING -TCGA-25-2391 57.36 1:DECEASED COMPLETE RESPONSE TUMOR FREE 48.92 0:DiseaseFree 48.92 43.82 Sensitive -TCGA-25-2392 75.8 1:DECEASED 1.02 MISSING MISSING MISSING -TCGA-25-2393 81.05 1:DECEASED PARTIAL RESPONSE WITH TUMOR 37.93 1:Recurred/Progressed 10 5.9 Resistant -TCGA-25-2396 71.63 1:DECEASED 3.02 MISSING MISSING MISSING -TCGA-25-2397 59.13 1:DECEASED 11.97 MISSING MISSING MISSING -TCGA-25-2398 71.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.89 1:Recurred/Progressed 18.92 13.88 Sensitive -TCGA-25-2399 80.47 1:DECEASED PARTIAL RESPONSE WITH TUMOR 19.93 1:Recurred/Progressed 7.97 1.9 Resistant -TCGA-25-2400 76.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 41.9 1:Recurred/Progressed 18.92 12.85 Sensitive -TCGA-25-2401 64.96 1:DECEASED 2.95 MISSING MISSING MISSING -TCGA-25-2404 38.86 1:DECEASED COMPLETE RESPONSE WITH TUMOR 28.92 1:Recurred/Progressed 13.93 9.9 Sensitive -TCGA-25-2408 37.28 1:DECEASED PARTIAL RESPONSE WITH TUMOR 30.89 1:Recurred/Progressed 10.92 MISSING -TCGA-25-2409 71.96 1:DECEASED COMPLETE RESPONSE WITH TUMOR 26.89 1:Recurred/Progressed 9.93 3.9 Resistant -TCGA-29-1688 39.93 1:DECEASED STABLE DISEASE WITH TUMOR 78.66 1:Recurred/Progressed 6 MISSING -TCGA-29-1690 66.62 1:DECEASED WITH TUMOR 47.48 1:Recurred/Progressed MISSING MISSING -TCGA-29-1691 51.13 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.2 1:Recurred/Progressed 20.1 15.6 Sensitive -TCGA-29-1693 72.05 0:LIVING COMPLETE RESPONSE WITH TUMOR 101.48 1:Recurred/Progressed 22.75 16.4 Sensitive -TCGA-29-1694 45.27 1:DECEASED STABLE DISEASE WITH TUMOR 38.92 1:Recurred/Progressed MISSING MISSING -TCGA-29-1695 62.72 1:DECEASED 40.3 MISSING MISSING MISSING -TCGA-29-1696 43.34 1:DECEASED PARTIAL RESPONSE WITH TUMOR 33.84 1:Recurred/Progressed 11.21 5.6 Resistant -TCGA-29-1697 62.83 1:DECEASED COMPLETE RESPONSE WITH TUMOR 31.08 1:Recurred/Progressed 16.36 10.4 Sensitive -TCGA-29-1698 53.73 0:LIVING COMPLETE RESPONSE WITH TUMOR 68.1 1:Recurred/Progressed 5.9 -1.8 Resistant -TCGA-29-1699 57.89 1:DECEASED 36.26 MISSING MISSING MISSING -TCGA-29-1701 56.81 1:DECEASED PARTIAL RESPONSE WITH TUMOR 16.89 1:Recurred/Progressed 9.77 4.5 Resistant -TCGA-29-1702 84.68 1:DECEASED COMPLETE RESPONSE WITH TUMOR 23.87 1:Recurred/Progressed 9.34 2.9 Resistant -TCGA-29-1703 56.5 0:LIVING COMPLETE RESPONSE WITH TUMOR 55.08 1:Recurred/Progressed 10.62 5.3 Resistant -TCGA-29-1705 48.03 1:DECEASED COMPLETE RESPONSE WITH TUMOR 18.2 1:Recurred/Progressed 9.28 3.71 Resistant -TCGA-29-1707 41.14 0:LIVING COMPLETE RESPONSE 41.84 1:Recurred/Progressed 39.34 34.8 Sensitive -TCGA-29-1710 54.71 1:DECEASED PARTIAL RESPONSE WITH TUMOR 31.18 1:Recurred/Progressed 10.33 MISSING -TCGA-29-1711 45.16 0:LIVING COMPLETE RESPONSE TUMOR FREE 34.52 0:DiseaseFree 34.52 30.1 Sensitive -TCGA-29-1761 80.38 1:DECEASED STABLE DISEASE WITH TUMOR 17.31 1:Recurred/Progressed MISSING MISSING -TCGA-29-1762 59.94 1:DECEASED COMPLETE RESPONSE WITH TUMOR 86.36 1:Recurred/Progressed 45.05 40.6 Sensitive -TCGA-29-1763 43.89 0:LIVING COMPLETE RESPONSE WITH TUMOR 66.59 1:Recurred/Progressed 14.03 10.8 Sensitive -TCGA-29-1764 49.35 0:LIVING COMPLETE RESPONSE WITH TUMOR 62.75 1:Recurred/Progressed 25.97 20.5 Sensitive -TCGA-29-1766 74.96 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 39.28 1:Recurred/Progressed 22.03 15.9 Sensitive -TCGA-29-1768 50.4 1:DECEASED STABLE DISEASE WITH TUMOR 31.21 1:Recurred/Progressed 17.93 14.6 Sensitive -TCGA-29-1769 40.42 0:LIVING COMPLETE RESPONSE TUMOR FREE 22.92 0:DiseaseFree 22.92 18 Sensitive -TCGA-29-1770 54.83 0:LIVING COMPLETE RESPONSE WITH TUMOR 24.3 1:Recurred/Progressed 12.36 7.9 Sensitive -TCGA-29-1771 76.97 0:LIVING COMPLETE RESPONSE WITH TUMOR 22.46 1:Recurred/Progressed 19.48 14.9 Sensitive -TCGA-29-1774 82.17 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 17.25 1:Recurred/Progressed 7.64 6.5 Sensitive -TCGA-29-1775 51.9 0:LIVING COMPLETE RESPONSE WITH TUMOR 12.33 1:Recurred/Progressed 11.18 5.7 Resistant -TCGA-29-1776 63.06 0:LIVING STABLE DISEASE WITH TUMOR 11.8 1:Recurred/Progressed MISSING MISSING -TCGA-29-1777 47.55 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 12.26 1:Recurred/Progressed MISSING MISSING -TCGA-29-1778 77.11 0:LIVING COMPLETE RESPONSE TUMOR FREE 14.89 0:DiseaseFree 14.89 10.8 Sensitive -TCGA-29-1781 69.6 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.33 0:DiseaseFree 8.33 0 Tooearly -TCGA-29-1783 58.31 0:LIVING TUMOR FREE 7.18 0:DiseaseFree 7.18 2.1 Tooearly -TCGA-29-1784 55.37 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.34 0:DiseaseFree 5.34 0.9 Tooearly -TCGA-29-1785 55.94 1:DECEASED COMPLETE RESPONSE 36.2 1:Recurred/Progressed 15.51 10.4 Sensitive -TCGA-29-2414 75.12 1:DECEASED COMPLETE RESPONSE WITH TUMOR 85.93 1:Recurred/Progressed 18.07 13.73 Sensitive -TCGA-29-2425 60.52 0:LIVING COMPLETE RESPONSE TUMOR FREE 64.82 1:Recurred/Progressed 51.7 44.97 Sensitive -TCGA-29-2427 60.11 0:LIVING COMPLETE RESPONSE WITH TUMOR 62.3 1:Recurred/Progressed 51.84 MISSING -TCGA-29-2428 58.61 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.98 0:DiseaseFree 44.98 40.28 Sensitive -TCGA-30-1714 68.58 1:DECEASED COMPLETE RESPONSE WITH TUMOR 37.97 1:Recurred/Progressed 7.9 3.9 Resistant -TCGA-30-1718 44.93 1:DECEASED WITH TUMOR 51.77 1:Recurred/Progressed 29.38 23.6 Sensitive -TCGA-30-1853 58.64 1:DECEASED COMPLETE RESPONSE WITH TUMOR 36.16 1:Recurred/Progressed 20.79 16.7 Sensitive -TCGA-30-1855 61.35 1:DECEASED WITH TUMOR 2.46 1:Recurred/Progressed MISSING MISSING -TCGA-30-1856 56.51 1:DECEASED PARTIAL RESPONSE WITH TUMOR 15.64 1:Recurred/Progressed 7.18 0.8 Resistant -TCGA-30-1857 64.91 1:DECEASED WITH TUMOR 0.13 1:Recurred/Progressed MISSING MISSING -TCGA-30-1859 56.16 1:DECEASED PARTIAL RESPONSE WITH TUMOR 47.93 1:Recurred/Progressed MISSING MISSING -TCGA-30-1860 58.65 1:DECEASED COMPLETE RESPONSE WITH TUMOR 44.79 1:Recurred/Progressed 13.02 6.3 Sensitive -TCGA-30-1861 74.25 1:DECEASED 34.69 MISSING MISSING MISSING -TCGA-30-1862 65.47 1:DECEASED WITH TUMOR 6.07 1:Recurred/Progressed MISSING MISSING -TCGA-30-1866 61.81 1:DECEASED COMPLETE RESPONSE WITH TUMOR 36.52 1:Recurred/Progressed 9.31 5.2 Resistant -TCGA-30-1867 47.01 1:DECEASED WITH TUMOR 1.18 1:Recurred/Progressed MISSING MISSING -TCGA-30-1880 56.23 1:DECEASED PARTIAL RESPONSE WITH TUMOR 57.41 1:Recurred/Progressed 11.41 6.4 Sensitive -TCGA-30-1887 67.11 1:DECEASED PARTIAL RESPONSE WITH TUMOR 24.2 1:Recurred/Progressed MISSING MISSING -TCGA-30-1891 61.22 1:DECEASED PARTIAL RESPONSE WITH TUMOR 29.97 1:Recurred/Progressed 5.93 1.3 Resistant -TCGA-30-1892 52.75 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.66 1:Recurred/Progressed 8.3 3.9 Resistant -TCGA-31-1944 47.11 0:LIVING COMPLETE RESPONSE WITH TUMOR 45.87 1:Recurred/Progressed 22.66 14.79 Sensitive -TCGA-31-1946 30.5 0:LIVING WITH TUMOR 30.49 1:Recurred/Progressed 22.16 20.4 Sensitive -TCGA-31-1950 76.96 0:LIVING PARTIAL RESPONSE WITH TUMOR 19.02 1:Recurred/Progressed 11.74 6.7 Sensitive -TCGA-31-1951 58.48 0:LIVING WITH TUMOR 22.66 1:Recurred/Progressed 21.84 16.74 Sensitive -TCGA-31-1953 52.2 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 7.05 1:Recurred/Progressed 2.66 0.2 Resistant -TCGA-31-1956 60.55 0:LIVING WITH TUMOR 43.97 1:Recurred/Progressed MISSING MISSING -TCGA-31-1959 49.96 0:LIVING WITH TUMOR 2.49 1:Recurred/Progressed MISSING MISSING -TCGA-36-1568 52.91 0:LIVING PARTIAL RESPONSE WITH TUMOR 28.66 1:Recurred/Progressed 17.93 14 Sensitive -TCGA-36-1569 52.5 0:LIVING PARTIAL RESPONSE 28.56 0:DiseaseFree 28.56 MISSING -TCGA-36-1570 49.19 0:LIVING PARTIAL RESPONSE WITH TUMOR 21.48 1:Recurred/Progressed 12.3 8 Sensitive -TCGA-36-1571 53.72 1:DECEASED COMPLETE RESPONSE WITH TUMOR 22.79 1:Recurred/Progressed 12.26 6.6 Sensitive -TCGA-36-1574 48.9 0:LIVING COMPLETE RESPONSE WITH TUMOR 22.49 1:Recurred/Progressed 21.25 14.6 Sensitive -TCGA-36-1575 83.81 0:LIVING TUMOR FREE 8.52 0:DiseaseFree 8.52 MISSING -TCGA-36-1576 76.1 0:LIVING COMPLETE RESPONSE WITH TUMOR 29.97 1:Recurred/Progressed 26.75 19.5 Sensitive -TCGA-36-1577 43.3 0:LIVING COMPLETE RESPONSE TUMOR FREE 25.67 0:DiseaseFree 25.67 MISSING -TCGA-36-1578 63.92 0:LIVING WITH TUMOR 27.77 1:Recurred/Progressed 10.16 3.1 Resistant -TCGA-36-1580 82.17 1:DECEASED WITH TUMOR 24.16 1:Recurred/Progressed 14.43 3 Resistant -TCGA-36-1581 63.76 0:LIVING COMPLETE RESPONSE WITH TUMOR 24.62 1:Recurred/Progressed 23.02 18.5 Sensitive -TCGA-57-1582 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 23.97 1:Recurred/Progressed MISSING MISSING -TCGA-57-1583 57.96 1:DECEASED WITH TUMOR 11.34 1:Recurred/Progressed MISSING MISSING -TCGA-57-1584 47.28 0:LIVING WITH TUMOR 21.08 1:Recurred/Progressed 17.38 MISSING -TCGA-57-1585 57.18 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 1.08 1:Recurred/Progressed MISSING MISSING -TCGA-57-1586 66.68 0:LIVING WITH TUMOR 21.57 1:Recurred/Progressed 7.8 3.2 Resistant -TCGA-57-1993 56.15 0:LIVING TUMOR FREE 24.69 0:DiseaseFree 24.69 MISSING -TCGA-57-1994 MISSING MISSING -TCGA-59-2348 0:LIVING COMPLETE RESPONSE TUMOR FREE 179.18 0:DiseaseFree 179.18 MISSING -TCGA-59-2350 1:DECEASED PARTIAL RESPONSE WITH TUMOR 22.26 1:Recurred/Progressed 6.92 MISSING -TCGA-59-2351 0:LIVING COMPLETE RESPONSE TUMOR FREE 115.8 1:Recurred/Progressed 70.13 MISSING -TCGA-59-2352 1:DECEASED WITH TUMOR 8.2 1:Recurred/Progressed MISSING MISSING -TCGA-59-2354 1:DECEASED STABLE DISEASE WITH TUMOR 34.3 1:Recurred/Progressed 15.11 MISSING -TCGA-59-2355 1:DECEASED WITH TUMOR 2.13 1:Recurred/Progressed MISSING MISSING -TCGA-59-2363 0:LIVING COMPLETE RESPONSE TUMOR FREE 5.15 0:DiseaseFree 5.15 MISSING -TCGA-61-1724 47.03 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 20.95 1:Recurred/Progressed MISSING MISSING -TCGA-61-1725 40.49 0:LIVING STABLE DISEASE WITH TUMOR 31.44 1:Recurred/Progressed 27.77 22.5 Sensitive -TCGA-61-1728 59.12 0:LIVING COMPLETE RESPONSE TUMOR FREE 27.9 1:Recurred/Progressed 17.57 10.8 Sensitive -TCGA-61-1733 71.72 0:LIVING STABLE DISEASE WITH TUMOR 31.8 1:Recurred/Progressed 5.84 1.6 Resistant -TCGA-61-1736 45.5 1:DECEASED COMPLETE RESPONSE WITH TUMOR 48.79 1:Recurred/Progressed 25.18 20.5 Sensitive -TCGA-61-1737 42.55 0:LIVING COMPLETE RESPONSE TUMOR FREE 44.23 0:DiseaseFree 44.23 39 Sensitive -TCGA-61-1738 60.16 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 35.93 1:Recurred/Progressed 9.28 0 Resistant -TCGA-61-1740 71.68 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 2.62 1:Recurred/Progressed MISSING MISSING -TCGA-61-1741 76.05 1:DECEASED COMPLETE RESPONSE WITH TUMOR 33.67 1:Recurred/Progressed 16.07 10.1 Sensitive -TCGA-61-1743 53.05 1:DECEASED COMPLETE RESPONSE WITH TUMOR 43.64 1:Recurred/Progressed 26.59 21 Sensitive -TCGA-61-1895 52.21 0:LIVING STABLE DISEASE TUMOR FREE 1.54 0:DiseaseFree 1.54 -3.7 Tooearly -TCGA-61-1899 81.32 0:LIVING COMPLETE RESPONSE TUMOR FREE 8.69 0:DiseaseFree 8.69 3.2 Tooearly -TCGA-61-1900 51.95 0:LIVING STABLE DISEASE TUMOR FREE 5.8 0:DiseaseFree 5.8 3.3 Tooearly -TCGA-61-1901 65.87 1:DECEASED STABLE DISEASE WITH TUMOR 11.38 1:Recurred/Progressed 10.79 1.2 Resistant -TCGA-61-1904 60.29 0:LIVING COMPLETE RESPONSE TUMOR FREE 9.18 0:DiseaseFree 9.18 3.8 Tooearly -TCGA-61-1906 55.81 1:DECEASED COMPLETE RESPONSE WITH TUMOR 34.23 1:Recurred/Progressed 7.93 2.8 Resistant -TCGA-61-1907 63.56 0:LIVING STABLE DISEASE WITH TUMOR 31.38 1:Recurred/Progressed 24.52 19.1 Sensitive -TCGA-61-1910 56.92 0:LIVING COMPLETE RESPONSE TUMOR FREE 37.05 0:DiseaseFree 37.05 31.7 Sensitive -TCGA-61-1911 55.17 0:LIVING COMPLETE RESPONSE WITH TUMOR 42.62 1:Recurred/Progressed 27.9 23 Sensitive -TCGA-61-1913 48.12 0:LIVING COMPLETE RESPONSE TUMOR FREE 49.08 0:DiseaseFree 49.08 44.7 Sensitive -TCGA-61-1914 65.33 0:LIVING COMPLETE RESPONSE WITH TUMOR 56.52 1:Recurred/Progressed 54.95 48.6 Sensitive -TCGA-61-1915 50.46 0:LIVING COMPLETE RESPONSE TUMOR FREE 67.7 0:DiseaseFree 67.7 63 Sensitive -TCGA-61-1917 60.19 1:DECEASED COMPLETE RESPONSE 43.41 MISSING MISSING MISSING -TCGA-61-1918 45.7 1:DECEASED COMPLETE RESPONSE WITH TUMOR 15.93 1:Recurred/Progressed 13.77 8.7 Sensitive -TCGA-61-1919 58.07 1:DECEASED COMPLETE RESPONSE 38.16 1:Recurred/Progressed 14.49 MISSING -TCGA-61-1995 43.86 0:LIVING STABLE DISEASE WITH TUMOR 2.16 1:Recurred/Progressed MISSING MISSING -TCGA-61-1998 48.91 0:LIVING WITH TUMOR 5.61 1:Recurred/Progressed MISSING MISSING -TCGA-61-2000 67.72 0:LIVING STABLE DISEASE WITH TUMOR 14.66 1:Recurred/Progressed 11.31 3.6 Resistant -TCGA-61-2002 46.88 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 18.1 1:Recurred/Progressed MISSING MISSING -TCGA-61-2003 53.73 0:LIVING PROGRESSIVE DISEASE WITH TUMOR 3.8 1:Recurred/Progressed MISSING MISSING -TCGA-61-2008 40.51 0:LIVING COMPLETE RESPONSE WITH TUMOR 30.69 1:Recurred/Progressed 26.95 22 Sensitive -TCGA-61-2009 65.12 0:LIVING COMPLETE RESPONSE WITH TUMOR 39.87 1:Recurred/Progressed 3.44 0.54 Resistant -TCGA-61-2012 81.72 0:LIVING 30.62 0:DiseaseFree 30.62 MISSING -TCGA-61-2016 51.47 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 1.25 1:Recurred/Progressed MISSING MISSING -TCGA-61-2088 51.42 0:LIVING TUMOR FREE 4.82 0:DiseaseFree 4.82 0 Tooearly -TCGA-61-2092 57.72 0:LIVING COMPLETE RESPONSE TUMOR FREE 51.67 0:DiseaseFree 51.67 46.4 Sensitive -TCGA-61-2094 63.75 0:LIVING COMPLETE RESPONSE TUMOR FREE 71.67 0:DiseaseFree 71.67 66.2 Sensitive -TCGA-61-2095 54.23 1:DECEASED COMPLETE RESPONSE WITH TUMOR 61.54 1:Recurred/Progressed 14.66 MISSING -TCGA-61-2097 71.11 0:LIVING COMPLETE RESPONSE TUMOR FREE 60.69 0:DiseaseFree 60.69 55.1 Sensitive -TCGA-61-2098 62.65 0:LIVING COMPLETE RESPONSE TUMOR FREE 65.54 0:DiseaseFree 65.54 60.7 Sensitive -TCGA-61-2101 55.57 1:DECEASED PARTIAL RESPONSE WITH TUMOR 55.44 1:Recurred/Progressed MISSING 48.2 MISSING -TCGA-61-2102 74.66 1:DECEASED WITH TUMOR 6.56 1:Recurred/Progressed MISSING MISSING -TCGA-61-2104 53.23 0:LIVING COMPLETE RESPONSE 76.75 1:Recurred/Progressed 55.21 MISSING -TCGA-61-2109 40.8 1:DECEASED WITH TUMOR 20.82 1:Recurred/Progressed 15.44 12.4 Sensitive -TCGA-61-2110 56.75 1:DECEASED PROGRESSIVE DISEASE WITH TUMOR 44.52 1:Recurred/Progressed 7.11 1.7 Resistant -TCGA-61-2111 61.68 0:LIVING COMPLETE RESPONSE WITH TUMOR 125.54 1:Recurred/Progressed 72.46 68 Sensitive -TCGA-61-2113 54.01 1:DECEASED 22.39 1:Recurred/Progressed 9.77 4.74 Resistant diff --git a/core/src/test/resources/clinical_data_SAMPLE.txt b/core/src/test/resources/clinical_data_SAMPLE.txt deleted file mode 100644 index 37c9ecf1747..00000000000 --- a/core/src/test/resources/clinical_data_SAMPLE.txt +++ /dev/null @@ -1,493 +0,0 @@ -#PATIENT_ID SAMPLE_ID TUMORSTAGE TUMORGRADE TUMORRESIDUALDISEASE -#Patient Identfier Sample Identifier Tumor Stage Tumor Grade Tumor Residual Disease -#STRING STRING NUMBER STRING STRING -#1 1 1 1 1 -PATIENT_ID SAMPLE_ID TUMORSTAGE TUMORGRADE TUMORRESIDUALDISEASE -TCGA-A1-A0SB TCGA-A1-A0SB-01 IIIC G3 1-10 mm -TCGA-A1-A0SC TCGA-A1-A0SC-01 IIIC G3 1-10 mm -TCGA-A1-A0SI TCGA-A1-A0SI-01 IIIB G3 No Macroscopic disease -TCGA-A1-A0SE TCGA-A1-A0SE-01 IIIC G2 No Macroscopic disease -TCGA-04-1338 TCGA-04-1338-01 IIIC G3 1-10 mm -TCGA-04-1341 TCGA-04-1341-01 G3 -TCGA-04-1342 TCGA-04-1342-01 IV G2 >20mm -TCGA-04-1343 TCGA-04-1343-01 IV G3 >20mm -TCGA-04-1346 TCGA-04-1346-01 IIIC G2 -TCGA-04-1347 TCGA-04-1347-01 IV G3 No Macroscopic disease -TCGA-04-1348 TCGA-04-1348-01 IIIB G3 1-10 mm -TCGA-04-1349 TCGA-04-1349-01 IV G3 -TCGA-04-1350 TCGA-04-1350-01 IIIC G3 >20mm -TCGA-04-1356 TCGA-04-1356-01 IIC G3 -TCGA-04-1357 TCGA-04-1357-01 IIIB G3 -TCGA-04-1361 TCGA-04-1361-01 IIIB G3 No Macroscopic disease -TCGA-04-1362 TCGA-04-1362-01 IIC G3 1-10 mm -TCGA-04-1364 TCGA-04-1364-01 IIIC G3 1-10 mm -TCGA-04-1365 TCGA-04-1365-01 IIIB G3 -TCGA-04-1367 TCGA-04-1367-01 IIIC G3 No Macroscopic disease -TCGA-04-1514 TCGA-04-1514-01 IIIA G2 No Macroscopic disease -TCGA-04-1517 TCGA-04-1517-01 IIIC G3 >20mm -TCGA-04-1519 TCGA-04-1519-01 IIIC G3 -TCGA-04-1525 TCGA-04-1525-01 IIIC G3 1-10 mm -TCGA-04-1530 TCGA-04-1530-01 IIIC G3 1-10 mm -TCGA-04-1536 TCGA-04-1536-01 IV G3 1-10 mm -TCGA-04-1542 TCGA-04-1542-01 IIIB G2 1-10 mm -TCGA-04-1638 TCGA-04-1638-01 IV G3 No Macroscopic disease -TCGA-04-1646 TCGA-04-1646-01 IIIC G3 1-10 mm -TCGA-04-1648 TCGA-04-1648-01 IIIC G2 1-10 mm -TCGA-04-1649 TCGA-04-1649-01 IIIC G3 1-10 mm -TCGA-04-1651 TCGA-04-1651-01 IIIC G3 1-10 mm -TCGA-04-1652 TCGA-04-1652-01 IIIC G2 -TCGA-04-1654 TCGA-04-1654-01 IIIC G2 1-10 mm -TCGA-04-1655 TCGA-04-1655-01 IIIB G2 No Macroscopic disease -TCGA-09-0364 TCGA-09-0364-01 IIC G3 11-20 mm -TCGA-09-0366 TCGA-09-0366-01 IIIC G3 1-10 mm -TCGA-09-0367 TCGA-09-0367-01 IIIC G3 1-10 mm -TCGA-09-0369 TCGA-09-0369-01 IIIC G3 No Macroscopic disease -TCGA-09-1659 TCGA-09-1659-01 IIIC G3 >20mm -TCGA-09-1661 TCGA-09-1661-01 IIIC G3 1-10 mm -TCGA-09-1662 TCGA-09-1662-01 IV G3 1-10 mm -TCGA-09-1665 TCGA-09-1665-01 IIIC G2 No Macroscopic disease -TCGA-09-1666 TCGA-09-1666-01 IIIC G3 No Macroscopic disease -TCGA-09-1667 TCGA-09-1667-01 IIC G2 No Macroscopic disease -TCGA-09-1668 TCGA-09-1668-01 IIIC G3 -TCGA-09-1669 TCGA-09-1669-01 IIIA G3 No Macroscopic disease -TCGA-09-1670 TCGA-09-1670-01 IIIA G3 No Macroscopic disease -TCGA-09-1673 TCGA-09-1673-01 IV G3 >20mm -TCGA-09-1674 TCGA-09-1674-01 IIIC G3 1-10 mm -TCGA-09-2044 TCGA-09-2044-01 IIB G3 No Macroscopic disease -TCGA-09-2045 TCGA-09-2045-01 IV G2 1-10 mm -TCGA-09-2048 TCGA-09-2048-01 IIIC G3 1-10 mm -TCGA-09-2049 TCGA-09-2049-01 IIIC G3 >20mm -TCGA-09-2050 TCGA-09-2050-01 IIA G2 No Macroscopic disease -TCGA-09-2051 TCGA-09-2051-01 IIIC G3 No Macroscopic disease -TCGA-09-2053 TCGA-09-2053-01 IIIC G3 No Macroscopic disease -TCGA-09-2054 TCGA-09-2054-01 IIIC G3 1-10 mm -TCGA-09-2056 TCGA-09-2056-01 IIIC G3 No Macroscopic disease -TCGA-10-0926 TCGA-10-0926-01 IIIC G3 11-20 mm -TCGA-10-0927 TCGA-10-0927-01 IIIC G2 1-10 mm -TCGA-10-0928 TCGA-10-0928-01 IIIC G3 1-10 mm -TCGA-10-0930 TCGA-10-0930-01 IIIC G3 1-10 mm -TCGA-10-0931 TCGA-10-0931-01 IIIC G3 1-10 mm -TCGA-10-0933 TCGA-10-0933-01 IIIC G3 No Macroscopic disease -TCGA-10-0934 TCGA-10-0934-01 IIIC G3 1-10 mm -TCGA-10-0935 TCGA-10-0935-01 IIIC G3 1-10 mm -TCGA-10-0936 TCGA-10-0936-01 IIIC G3 >20mm -TCGA-10-0937 TCGA-10-0937-01 IIIC G3 1-10 mm -TCGA-10-0938 TCGA-10-0938-01 IIIC G3 >20mm -TCGA-13-0714 TCGA-13-0714-01 IV G3 1-10 mm -TCGA-13-0717 TCGA-13-0717-01 IIIC G3 >20mm -TCGA-13-0720 TCGA-13-0720-01 IIIC G3 1-10 mm -TCGA-13-0723 TCGA-13-0723-01 IIIC G3 >20mm -TCGA-13-0724 TCGA-13-0724-01 IV G3 1-10 mm -TCGA-13-0725 TCGA-13-0725-01 IIIC G3 1-10 mm -TCGA-13-0726 TCGA-13-0726-01 IIIC 1-10 mm -TCGA-13-0727 TCGA-13-0727-01 IIIC G3 1-10 mm -TCGA-13-0730 TCGA-13-0730-01 IIIC G3 >20mm -TCGA-13-0751 TCGA-13-0751-01 IIIC 1-10 mm -TCGA-13-0755 TCGA-13-0755-01 IV G3 1-10 mm -TCGA-13-0757 TCGA-13-0757-01 IIIC G3 1-10 mm -TCGA-13-0760 TCGA-13-0760-01 IV G3 No Macroscopic disease -TCGA-13-0761 TCGA-13-0761-01 IV G3 No Macroscopic disease -TCGA-13-0762 TCGA-13-0762-01 IIIC G3 No Macroscopic disease -TCGA-13-0764 TCGA-13-0764-01 IV G3 1-10 mm -TCGA-13-0765 TCGA-13-0765-01 IIIC G3 1-10 mm -TCGA-13-0766 TCGA-13-0766-01 IIIC G3 1-10 mm -TCGA-13-0768 TCGA-13-0768-01 IIIC G3 1-10 mm -TCGA-13-0791 TCGA-13-0791-01 IIIC G3 No Macroscopic disease -TCGA-13-0792 TCGA-13-0792-01 IIIC G3 No Macroscopic disease -TCGA-13-0793 TCGA-13-0793-01 IV G3 1-10 mm -TCGA-13-0794 TCGA-13-0794-01 IIIC G3 1-10 mm -TCGA-13-0795 TCGA-13-0795-01 IIIC G3 >20mm -TCGA-13-0797 TCGA-13-0797-01 IIIC G3 1-10 mm -TCGA-13-0799 TCGA-13-0799-01 IIIC G3 No Macroscopic disease -TCGA-13-0800 TCGA-13-0800-01 IIIC G3 No Macroscopic disease -TCGA-13-0801 TCGA-13-0801-01 IIIC G3 No Macroscopic disease -TCGA-13-0802 TCGA-13-0802-01 IIIC G3 No Macroscopic disease -TCGA-13-0803 TCGA-13-0803-01 IIIC G3 No Macroscopic disease -TCGA-13-0804 TCGA-13-0804-01 IIIC G3 1-10 mm -TCGA-13-0805 TCGA-13-0805-01 IIIC G3 1-10 mm -TCGA-13-0807 TCGA-13-0807-01 IIIC G3 >20mm -TCGA-13-0883 TCGA-13-0883-01 IIIC G3 1-10 mm -TCGA-13-0884 TCGA-13-0884-01 IIIC G3 1-10 mm -TCGA-13-0885 TCGA-13-0885-01 IIIC G3 11-20 mm -TCGA-13-0886 TCGA-13-0886-01 IIIC G3 1-10 mm -TCGA-13-0887 TCGA-13-0887-01 IIIC G3 1-10 mm -TCGA-13-0888 TCGA-13-0888-01 IIIC G3 No Macroscopic disease -TCGA-13-0889 TCGA-13-0889-01 IV 1-10 mm -TCGA-13-0890 TCGA-13-0890-01 IIIC G3 1-10 mm -TCGA-13-0891 TCGA-13-0891-01 IV G3 No Macroscopic disease -TCGA-13-0893 TCGA-13-0893-01 IIIC G3 11-20 mm -TCGA-13-0894 TCGA-13-0894-01 IIIC G3 1-10 mm -TCGA-13-0897 TCGA-13-0897-01 IIIC G3 1-10 mm -TCGA-13-0899 TCGA-13-0899-01 IIIC G3 1-10 mm -TCGA-13-0900 TCGA-13-0900-01 IIIC G3 -TCGA-13-0901 TCGA-13-0901-01 IIIC G3 >20mm -TCGA-13-0903 TCGA-13-0903-01 IV G3 No Macroscopic disease -TCGA-13-0904 TCGA-13-0904-01 IIIC G3 >20mm -TCGA-13-0905 TCGA-13-0905-01 IIIC G3 -TCGA-13-0906 TCGA-13-0906-01 IIIC G3 1-10 mm -TCGA-13-0908 TCGA-13-0908-01 IV G3 1-10 mm -TCGA-13-0910 TCGA-13-0910-01 IIIC G3 1-10 mm -TCGA-13-0911 TCGA-13-0911-01 IV G3 1-10 mm -TCGA-13-0912 TCGA-13-0912-01 IIIC G3 No Macroscopic disease -TCGA-13-0913 TCGA-13-0913-01 IIIC G3 No Macroscopic disease -TCGA-13-0916 TCGA-13-0916-01 IIIC G3 No Macroscopic disease -TCGA-13-0919 TCGA-13-0919-01 IIIC G3 No Macroscopic disease -TCGA-13-0920 TCGA-13-0920-01 IIIC G3 1-10 mm -TCGA-13-0921 TCGA-13-0921-01 IIIC G3 No Macroscopic disease -TCGA-13-0923 TCGA-13-0923-01 IIIC G3 No Macroscopic disease -TCGA-13-0924 TCGA-13-0924-01 IV G3 1-10 mm -TCGA-13-1403 TCGA-13-1403-01 IIIC G3 -TCGA-13-1404 TCGA-13-1404-01 IIIC G3 1-10 mm -TCGA-13-1405 TCGA-13-1405-01 IV G3 1-10 mm -TCGA-13-1407 TCGA-13-1407-01 IIIC G3 -TCGA-13-1408 TCGA-13-1408-01 IIIC G3 >20mm -TCGA-13-1409 TCGA-13-1409-01 IIIC G3 1-10 mm -TCGA-13-1410 TCGA-13-1410-01 IV -TCGA-13-1411 TCGA-13-1411-01 IIIC G3 >20mm -TCGA-13-1412 TCGA-13-1412-01 IV G3 1-10 mm -TCGA-13-1477 TCGA-13-1477-01 IV G2 1-10 mm -TCGA-13-1481 TCGA-13-1481-01 IIIC G2 1-10 mm -TCGA-13-1482 TCGA-13-1482-01 IV G2 >20mm -TCGA-13-1483 TCGA-13-1483-01 IIIC G3 >20mm -TCGA-13-1484 TCGA-13-1484-01 IIIC G3 -TCGA-13-1485 TCGA-13-1485-01 IV G2 1-10 mm -TCGA-13-1487 TCGA-13-1487-01 IV -TCGA-13-1488 TCGA-13-1488-01 IV G3 11-20 mm -TCGA-13-1489 TCGA-13-1489-01 IIIC G2 -TCGA-13-1491 TCGA-13-1491-01 IIIC G3 -TCGA-13-1492 TCGA-13-1492-01 IIIC G3 -TCGA-13-1494 TCGA-13-1494-01 IV G3 -TCGA-13-1495 TCGA-13-1495-01 IIIC G2 1-10 mm -TCGA-13-1496 TCGA-13-1496-01 IIIC G3 >20mm -TCGA-13-1497 TCGA-13-1497-01 IIIC G3 -TCGA-13-1498 TCGA-13-1498-01 IIIC G3 >20mm -TCGA-13-1499 TCGA-13-1499-01 IIIC G3 -TCGA-13-1500 TCGA-13-1500-01 IIIC G3 11-20 mm -TCGA-13-1501 TCGA-13-1501-01 IV G3 >20mm -TCGA-13-1504 TCGA-13-1504-01 IIIC G3 -TCGA-13-1505 TCGA-13-1505-01 IIIC G3 1-10 mm -TCGA-13-1506 TCGA-13-1506-01 IIIC G3 -TCGA-13-1507 TCGA-13-1507-01 IIIC G3 1-10 mm -TCGA-13-1509 TCGA-13-1509-01 IV G3 1-10 mm -TCGA-13-1510 TCGA-13-1510-01 IIIC G3 No Macroscopic disease -TCGA-13-1511 TCGA-13-1511-01 IV G3 >20mm -TCGA-13-1512 TCGA-13-1512-01 IIIC G3 No Macroscopic disease -TCGA-13-2060 TCGA-13-2060-01 IV G3 1-10 mm -TCGA-20-0987 TCGA-20-0987-01 IIIC G3 1-10 mm -TCGA-20-0990 TCGA-20-0990-01 IIIC G3 -TCGA-20-0991 TCGA-20-0991-01 IIB G3 No Macroscopic disease -TCGA-20-1682 TCGA-20-1682-01 IIIC 11-20 mm -TCGA-20-1683 TCGA-20-1683-01 IIIC G3 No Macroscopic disease -TCGA-20-1684 TCGA-20-1684-01 IIIC G3 1-10 mm -TCGA-20-1685 TCGA-20-1685-01 IIIC G3 1-10 mm -TCGA-20-1686 TCGA-20-1686-01 IIIC G3 No Macroscopic disease -TCGA-20-1687 TCGA-20-1687-01 IV G3 No Macroscopic disease -TCGA-23-1021 TCGA-23-1021-01 IV G3 >20mm -TCGA-23-1022 TCGA-23-1022-01 IIIC G3 1-10 mm -TCGA-23-1023 TCGA-23-1023-01 IIIC G3 1-10 mm -TCGA-23-1024 TCGA-23-1024-01 IV G3 1-10 mm -TCGA-23-1026 TCGA-23-1026-01 IIIC G3 1-10 mm -TCGA-23-1027 TCGA-23-1027-01 IIIC G3 1-10 mm -TCGA-23-1028 TCGA-23-1028-01 IIIC G3 1-10 mm -TCGA-23-1029 TCGA-23-1029-01 IIIC G3 1-10 mm -TCGA-23-1030 TCGA-23-1030-01 IIIC G3 1-10 mm -TCGA-23-1031 TCGA-23-1031-01 IV G3 1-10 mm -TCGA-23-1032 TCGA-23-1032-01 IV G3 1-10 mm -TCGA-23-1107 TCGA-23-1107-01 IV G3 >20mm -TCGA-23-1109 TCGA-23-1109-01 IIIC G3 1-10 mm -TCGA-23-1110 TCGA-23-1110-01 IIIC G3 No Macroscopic disease -TCGA-23-1111 TCGA-23-1111-01 IIIC G3 >20mm -TCGA-23-1113 TCGA-23-1113-01 IV G3 1-10 mm -TCGA-23-1114 TCGA-23-1114-01 IIIC G3 No Macroscopic disease -TCGA-23-1116 TCGA-23-1116-01 IIIC G3 >20mm -TCGA-23-1117 TCGA-23-1117-01 IIIC G3 1-10 mm -TCGA-23-1118 TCGA-23-1118-01 IIIC G3 >20mm -TCGA-23-1119 TCGA-23-1119-01 IIIC G3 1-10 mm -TCGA-23-1120 TCGA-23-1120-01 IIIC G3 1-10 mm -TCGA-23-1121 TCGA-23-1121-01 IIIC G3 >20mm -TCGA-23-1122 TCGA-23-1122-01 IIIC G3 1-10 mm -TCGA-23-1123 TCGA-23-1123-01 IIIC G3 11-20 mm -TCGA-23-1124 TCGA-23-1124-01 IIIC G3 No Macroscopic disease -TCGA-23-1809 TCGA-23-1809-01 IIC G3 1-10 mm -TCGA-23-2072 TCGA-23-2072-01 IV G3 >20mm -TCGA-23-2077 TCGA-23-2077-01 IIIC G3 No Macroscopic disease -TCGA-23-2078 TCGA-23-2078-01 IIIC G3 No Macroscopic disease -TCGA-23-2079 TCGA-23-2079-01 IIIC G3 No Macroscopic disease -TCGA-23-2081 TCGA-23-2081-01 IV G3 1-10 mm -TCGA-23-2084 TCGA-23-2084-01 IV G3 No Macroscopic disease -TCGA-24-0966 TCGA-24-0966-01 IIIC G3 >20mm -TCGA-24-0968 TCGA-24-0968-01 IIIC G3 1-10 mm -TCGA-24-0970 TCGA-24-0970-01 IIIC G3 >20mm -TCGA-24-0975 TCGA-24-0975-01 IIIC G3 1-10 mm -TCGA-24-0979 TCGA-24-0979-01 IV G3 >20mm -TCGA-24-0980 TCGA-24-0980-01 IIIC G3 >20mm -TCGA-24-0982 TCGA-24-0982-01 IIIC G3 1-10 mm -TCGA-24-1103 TCGA-24-1103-01 IIIC G3 1-10 mm -TCGA-24-1104 TCGA-24-1104-01 IV G3 >20mm -TCGA-24-1105 TCGA-24-1105-01 IIIC G3 1-10 mm -TCGA-24-1413 TCGA-24-1413-01 IIIC G3 1-10 mm -TCGA-24-1416 TCGA-24-1416-01 IV G3 1-10 mm -TCGA-24-1417 TCGA-24-1417-01 IV G3 1-10 mm -TCGA-24-1418 TCGA-24-1418-01 IIIC G3 >20mm -TCGA-24-1419 TCGA-24-1419-01 IIIC G3 11-20 mm -TCGA-24-1422 TCGA-24-1422-01 IIIC G3 1-10 mm -TCGA-24-1423 TCGA-24-1423-01 IIIC G3 1-10 mm -TCGA-24-1424 TCGA-24-1424-01 IIIC G3 1-10 mm -TCGA-24-1425 TCGA-24-1425-01 IIIC G3 1-10 mm -TCGA-24-1426 TCGA-24-1426-01 IIIC G3 1-10 mm -TCGA-24-1427 TCGA-24-1427-01 IIIC G3 >20mm -TCGA-24-1428 TCGA-24-1428-01 IIIC G3 1-10 mm -TCGA-24-1430 TCGA-24-1430-01 IIIC G3 >20mm -TCGA-24-1431 TCGA-24-1431-01 IIIC G3 1-10 mm -TCGA-24-1434 TCGA-24-1434-01 IIIC G3 1-10 mm -TCGA-24-1435 TCGA-24-1435-01 IIIC G3 1-10 mm -TCGA-24-1436 TCGA-24-1436-01 IIIC G3 1-10 mm -TCGA-24-1463 TCGA-24-1463-01 IIIC G3 >20mm -TCGA-24-1464 TCGA-24-1464-01 IIIC G3 >20mm -TCGA-24-1466 TCGA-24-1466-01 IIIC G3 1-10 mm -TCGA-24-1467 TCGA-24-1467-01 IIIC G3 1-10 mm -TCGA-24-1469 TCGA-24-1469-01 IIIC G3 1-10 mm -TCGA-24-1470 TCGA-24-1470-01 IIIB G3 1-10 mm -TCGA-24-1471 TCGA-24-1471-01 IIIC G3 >20mm -TCGA-24-1474 TCGA-24-1474-01 IIIC G3 1-10 mm -TCGA-24-1544 TCGA-24-1544-01 IIIC G3 1-10 mm -TCGA-24-1545 TCGA-24-1545-01 IIIC G3 >20mm -TCGA-24-1546 TCGA-24-1546-01 IIIC G3 1-10 mm -TCGA-24-1548 TCGA-24-1548-01 IIIC G3 1-10 mm -TCGA-24-1549 TCGA-24-1549-01 IIIB G3 -TCGA-24-1550 TCGA-24-1550-01 IIIC G3 1-10 mm -TCGA-24-1551 TCGA-24-1551-01 IIIC G3 1-10 mm -TCGA-24-1552 TCGA-24-1552-01 IIIC G3 1-10 mm -TCGA-24-1553 TCGA-24-1553-01 IIIB G3 1-10 mm -TCGA-24-1555 TCGA-24-1555-01 IIIC G3 -TCGA-24-1556 TCGA-24-1556-01 IIB G3 1-10 mm -TCGA-24-1557 TCGA-24-1557-01 IIIC G3 >20mm -TCGA-24-1558 TCGA-24-1558-01 IIIC G3 1-10 mm -TCGA-24-1560 TCGA-24-1560-01 IIIC G3 1-10 mm -TCGA-24-1562 TCGA-24-1562-01 IIIC G3 1-10 mm -TCGA-24-1563 TCGA-24-1563-01 IIIC G3 1-10 mm -TCGA-24-1564 TCGA-24-1564-01 IIIC G3 1-10 mm -TCGA-24-1565 TCGA-24-1565-01 IIIC G3 1-10 mm -TCGA-24-1567 TCGA-24-1567-01 IIIB G3 1-10 mm -TCGA-24-1603 TCGA-24-1603-01 IIIB G3 -TCGA-24-1604 TCGA-24-1604-01 IIIC G3 -TCGA-24-1614 TCGA-24-1614-01 IIIC G3 1-10 mm -TCGA-24-1616 TCGA-24-1616-01 IIIC G3 1-10 mm -TCGA-24-1842 TCGA-24-1842-01 IIIC G3 1-10 mm -TCGA-24-1843 TCGA-24-1843-01 IIIC G3 1-10 mm -TCGA-24-1844 TCGA-24-1844-01 IIIC G3 1-10 mm -TCGA-24-1845 TCGA-24-1845-01 IIIC G3 1-10 mm -TCGA-24-1846 TCGA-24-1846-01 IIIC G3 1-10 mm -TCGA-24-1847 TCGA-24-1847-01 IV G3 1-10 mm -TCGA-24-1849 TCGA-24-1849-01 IIIC G3 1-10 mm -TCGA-24-1850 TCGA-24-1850-01 IIIC G3 1-10 mm -TCGA-24-1920 TCGA-24-1920-01 IIIC G3 1-10 mm -TCGA-24-1923 TCGA-24-1923-01 IIIC G3 1-10 mm -TCGA-24-1924 TCGA-24-1924-01 IIIC G3 1-10 mm -TCGA-24-1928 TCGA-24-1928-01 IIIC G3 11-20 mm -TCGA-24-1930 TCGA-24-1930-01 IIIC G3 1-10 mm -TCGA-24-2019 TCGA-24-2019-01 IIIC G3 1-10 mm -TCGA-24-2020 TCGA-24-2020-01 IIIC G3 1-10 mm -TCGA-24-2023 TCGA-24-2023-01 IIIA G3 1-10 mm -TCGA-24-2024 TCGA-24-2024-01 IIIC G3 1-10 mm -TCGA-24-2026 TCGA-24-2026-01 IIIC G3 >20mm -TCGA-24-2027 TCGA-24-2027-01 IV G3 >20mm -TCGA-24-2029 TCGA-24-2029-01 IIIC G3 >20mm -TCGA-24-2030 TCGA-24-2030-01 IIIC G3 >20mm -TCGA-24-2033 TCGA-24-2033-01 IIIC G3 >20mm -TCGA-24-2035 TCGA-24-2035-01 IIIC G3 1-10 mm -TCGA-24-2036 TCGA-24-2036-01 IIIA G3 No Macroscopic disease -TCGA-24-2038 TCGA-24-2038-01 IIIA 1-10 mm -TCGA-24-2254 TCGA-24-2254-01 IIIC G3 1-10 mm -TCGA-24-2260 TCGA-24-2260-01 IIIB G3 1-10 mm -TCGA-24-2261 TCGA-24-2261-01 IIIC G3 11-20 mm -TCGA-24-2262 TCGA-24-2262-01 IIIC G3 1-10 mm -TCGA-24-2267 TCGA-24-2267-01 IIB G3 No Macroscopic disease -TCGA-24-2271 TCGA-24-2271-01 IIIC G3 >20mm -TCGA-24-2280 TCGA-24-2280-01 IIIC G3 1-10 mm -TCGA-24-2281 TCGA-24-2281-01 IIA G3 1-10 mm -TCGA-24-2288 TCGA-24-2288-01 IIIC G3 >20mm -TCGA-24-2289 TCGA-24-2289-01 IV G3 >20mm -TCGA-24-2290 TCGA-24-2290-01 IIIC G3 1-10 mm -TCGA-24-2293 TCGA-24-2293-01 G3 >20mm -TCGA-24-2297 TCGA-24-2297-01 IIIC G3 >20mm -TCGA-24-2298 TCGA-24-2298-01 IIIC G3 >20mm -TCGA-25-1312 TCGA-25-1312-01 IV G3 1-10 mm -TCGA-25-1313 TCGA-25-1313-01 IV G3 1-10 mm -TCGA-25-1314 TCGA-25-1314-01 IV G3 1-10 mm -TCGA-25-1315 TCGA-25-1315-01 IIIC G3 1-10 mm -TCGA-25-1316 TCGA-25-1316-01 IIIC G3 1-10 mm -TCGA-25-1317 TCGA-25-1317-01 IIIC G3 -TCGA-25-1318 TCGA-25-1318-01 IIIC G3 1-10 mm -TCGA-25-1319 TCGA-25-1319-01 IIIC G3 11-20 mm -TCGA-25-1320 TCGA-25-1320-01 IIIC G3 1-10 mm -TCGA-25-1321 TCGA-25-1321-01 IIIC G3 No Macroscopic disease -TCGA-25-1322 TCGA-25-1322-01 IV G3 >20mm -TCGA-25-1323 TCGA-25-1323-01 IIIC G3 1-10 mm -TCGA-25-1324 TCGA-25-1324-01 IIIC G3 1-10 mm -TCGA-25-1325 TCGA-25-1325-01 IV G3 >20mm -TCGA-25-1326 TCGA-25-1326-01 IIIC G3 1-10 mm -TCGA-25-1328 TCGA-25-1328-01 IIIC G3 1-10 mm -TCGA-25-1329 TCGA-25-1329-01 IIIC G3 11-20 mm -TCGA-25-1623 TCGA-25-1623-01 IV G3 No Macroscopic disease -TCGA-25-1625 TCGA-25-1625-01 IIIC G3 1-10 mm -TCGA-25-1626 TCGA-25-1626-01 IIIC G3 >20mm -TCGA-25-1627 TCGA-25-1627-01 IIIC G3 1-10 mm -TCGA-25-1628 TCGA-25-1628-01 IIIC G3 1-10 mm -TCGA-25-1630 TCGA-25-1630-01 IIIC G3 1-10 mm -TCGA-25-1631 TCGA-25-1631-01 IIIC G3 1-10 mm -TCGA-25-1632 TCGA-25-1632-01 IV G3 1-10 mm -TCGA-25-1633 TCGA-25-1633-01 IIIC G3 1-10 mm -TCGA-25-1634 TCGA-25-1634-01 IIIC G3 No Macroscopic disease -TCGA-25-1635 TCGA-25-1635-01 IIIC G3 1-10 mm -TCGA-25-1870 TCGA-25-1870-01 IIIC G3 11-20 mm -TCGA-25-1871 TCGA-25-1871-01 IIIC G3 11-20 mm -TCGA-25-1877 TCGA-25-1877-01 IIIC G3 1-10 mm -TCGA-25-1878 TCGA-25-1878-01 IIIC G3 1-10 mm -TCGA-25-2042 TCGA-25-2042-01 IIIC G3 >20mm -TCGA-25-2391 TCGA-25-2391-01 IIIC G3 >20mm -TCGA-25-2392 TCGA-25-2392-01 IV G3 11-20 mm -TCGA-25-2393 TCGA-25-2393-01 IIIC G3 11-20 mm -TCGA-25-2396 TCGA-25-2396-01 IIIC G3 No Macroscopic disease -TCGA-25-2397 TCGA-25-2397-01 IV G3 No Macroscopic disease -TCGA-25-2398 TCGA-25-2398-01 IIIC G3 1-10 mm -TCGA-25-2399 TCGA-25-2399-01 IIIC G3 >20mm -TCGA-25-2400 TCGA-25-2400-01 IIIC G3 No Macroscopic disease -TCGA-25-2401 TCGA-25-2401-01 IIIC G3 1-10 mm -TCGA-25-2404 TCGA-25-2404-01 IIIC G3 No Macroscopic disease -TCGA-25-2408 TCGA-25-2408-01 IV G2 1-10 mm -TCGA-25-2409 TCGA-25-2409-01 IV G3 1-10 mm -TCGA-29-1688 TCGA-29-1688-01 IIIC G2 -TCGA-29-1690 TCGA-29-1690-01 IIIC G2 11-20 mm -TCGA-29-1691 TCGA-29-1691-01 IIIC G2 1-10 mm -TCGA-29-1693 TCGA-29-1693-01 IIIC G3 >20mm -TCGA-29-1694 TCGA-29-1694-01 IIIC 11-20 mm -TCGA-29-1695 TCGA-29-1695-01 IIIC G2 >20mm -TCGA-29-1696 TCGA-29-1696-01 IIIC G2 1-10 mm -TCGA-29-1697 TCGA-29-1697-01 IIIC G3 >20mm -TCGA-29-1698 TCGA-29-1698-01 IIIC G3 1-10 mm -TCGA-29-1699 TCGA-29-1699-01 IIIC G3 1-10 mm -TCGA-29-1701 TCGA-29-1701-01 IIIC G3 -TCGA-29-1702 TCGA-29-1702-01 IIIC G3 1-10 mm -TCGA-29-1703 TCGA-29-1703-01 IIIC G2 1-10 mm -TCGA-29-1705 TCGA-29-1705-01 IIIC G2 >20mm -TCGA-29-1707 TCGA-29-1707-01 IIC G3 No Macroscopic disease -TCGA-29-1710 TCGA-29-1710-01 IIIC G2 1-10 mm -TCGA-29-1711 TCGA-29-1711-01 IIIC G2 No Macroscopic disease -TCGA-29-1761 TCGA-29-1761-01 IIIC G3 >20mm -TCGA-29-1762 TCGA-29-1762-01 IV G2 >20mm -TCGA-29-1763 TCGA-29-1763-01 IIC G2 1-10 mm -TCGA-29-1764 TCGA-29-1764-01 IIIC G2 >20mm -TCGA-29-1766 TCGA-29-1766-01 IIIC G2 11-20 mm -TCGA-29-1768 TCGA-29-1768-01 IV G3 >20mm -TCGA-29-1769 TCGA-29-1769-01 IIIC G3 1-10 mm -TCGA-29-1770 TCGA-29-1770-01 IIIC G2 1-10 mm -TCGA-29-1771 TCGA-29-1771-01 IIIC G2 >20mm -TCGA-29-1774 TCGA-29-1774-01 IIIC G3 >20mm -TCGA-29-1775 TCGA-29-1775-01 IIIC G2 -TCGA-29-1776 TCGA-29-1776-01 IIIC G3 >20mm -TCGA-29-1777 TCGA-29-1777-01 IIIC G2 >20mm -TCGA-29-1778 TCGA-29-1778-01 IIIC G3 No Macroscopic disease -TCGA-29-1781 TCGA-29-1781-01 IIIC G3 -TCGA-29-1783 TCGA-29-1783-01 IIIC G3 -TCGA-29-1784 TCGA-29-1784-01 IIIC G3 -TCGA-29-1785 TCGA-29-1785-01 IIIC G3 >20mm -TCGA-29-2414 TCGA-29-2414-01 IIIC G2 11-20 mm -TCGA-29-2425 TCGA-29-2425-01 IIIC G2 >20mm -TCGA-29-2427 TCGA-29-2427-01 IIIC G3 >20mm -TCGA-29-2428 TCGA-29-2428-01 IIIC G3 >20mm -TCGA-30-1714 TCGA-30-1714-01 IV G3 1-10 mm -TCGA-30-1718 TCGA-30-1718-01 IIIC G3 1-10 mm -TCGA-30-1853 TCGA-30-1853-01 IIIC G3 1-10 mm -TCGA-30-1855 TCGA-30-1855-01 IIIC G3 1-10 mm -TCGA-30-1856 TCGA-30-1856-01 IIIC G3 1-10 mm -TCGA-30-1857 TCGA-30-1857-01 IV G3 -TCGA-30-1859 TCGA-30-1859-01 G3 1-10 mm -TCGA-30-1860 TCGA-30-1860-01 IIIC G3 >20mm -TCGA-30-1861 TCGA-30-1861-01 IIIC G3 1-10 mm -TCGA-30-1862 TCGA-30-1862-01 IV G2 >20mm -TCGA-30-1866 TCGA-30-1866-01 IV G2 1-10 mm -TCGA-30-1867 TCGA-30-1867-01 IV -TCGA-30-1880 TCGA-30-1880-01 IIIC G3 No Macroscopic disease -TCGA-30-1887 TCGA-30-1887-01 IIIC G2 1-10 mm -TCGA-30-1891 TCGA-30-1891-01 IIIC G2 1-10 mm -TCGA-30-1892 TCGA-30-1892-01 IIIC G3 1-10 mm -TCGA-31-1944 TCGA-31-1944-01 IIIC G3 No Macroscopic disease -TCGA-31-1946 TCGA-31-1946-01 IIIC G3 No Macroscopic disease -TCGA-31-1950 TCGA-31-1950-01 IIIC G2 1-10 mm -TCGA-31-1951 TCGA-31-1951-01 IIIC G3 No Macroscopic disease -TCGA-31-1953 TCGA-31-1953-01 IIIC G3 -TCGA-31-1956 TCGA-31-1956-01 IIIB G3 -TCGA-31-1959 TCGA-31-1959-01 IV G2 -TCGA-36-1568 TCGA-36-1568-01 IIIC G3 -TCGA-36-1569 TCGA-36-1569-01 IIIC G3 1-10 mm -TCGA-36-1570 TCGA-36-1570-01 IIIC G3 >20mm -TCGA-36-1571 TCGA-36-1571-01 IIIB G3 No Macroscopic disease -TCGA-36-1574 TCGA-36-1574-01 IIIC G3 >20mm -TCGA-36-1575 TCGA-36-1575-01 IIIB G3 No Macroscopic disease -TCGA-36-1576 TCGA-36-1576-01 IIIC G3 >20mm -TCGA-36-1577 TCGA-36-1577-01 IIC G2 No Macroscopic disease -TCGA-36-1578 TCGA-36-1578-01 IV G3 >20mm -TCGA-36-1580 TCGA-36-1580-01 IIIC G3 >20mm -TCGA-36-1581 TCGA-36-1581-01 IIC G3 No Macroscopic disease -TCGA-57-1582 TCGA-57-1582-01 IIIC G3 1-10 mm -TCGA-57-1583 TCGA-57-1583-01 IIIC G3 No Macroscopic disease -TCGA-57-1584 TCGA-57-1584-01 IIIC G3 1-10 mm -TCGA-57-1585 TCGA-57-1585-01 IIIC G3 11-20 mm -TCGA-57-1586 TCGA-57-1586-01 IIIC G3 11-20 mm -TCGA-57-1993 TCGA-57-1993-01 IIIC G3 No Macroscopic disease -TCGA-57-1994 TCGA-57-1994-01 -TCGA-59-2348 TCGA-59-2348-01 IIIC G3 -TCGA-59-2350 TCGA-59-2350-01 IV G3 1-10 mm -TCGA-59-2351 TCGA-59-2351-01 IIIC G3 1-10 mm -TCGA-59-2352 TCGA-59-2352-01 IIIC G3 -TCGA-59-2354 TCGA-59-2354-01 IIIC G3 1-10 mm -TCGA-59-2355 TCGA-59-2355-01 IV G3 >20mm -TCGA-59-2363 TCGA-59-2363-01 IIIA G3 No Macroscopic disease -TCGA-61-1724 TCGA-61-1724-01 IIIC G3 No Macroscopic disease -TCGA-61-1725 TCGA-61-1725-01 IIIC G3 11-20 mm -TCGA-61-1728 TCGA-61-1728-01 IV G3 1-10 mm -TCGA-61-1733 TCGA-61-1733-01 IIIC G3 No Macroscopic disease -TCGA-61-1736 TCGA-61-1736-01 IIIC G3 -TCGA-61-1737 TCGA-61-1737-01 IV G3 1-10 mm -TCGA-61-1738 TCGA-61-1738-01 IIIC G3 1-10 mm -TCGA-61-1740 TCGA-61-1740-01 IIIC G3 >20mm -TCGA-61-1741 TCGA-61-1741-01 IIIB G3 >20mm -TCGA-61-1743 TCGA-61-1743-01 IIC G2 No Macroscopic disease -TCGA-61-1895 TCGA-61-1895-01 IIIB G3 No Macroscopic disease -TCGA-61-1899 TCGA-61-1899-01 IIIC G3 No Macroscopic disease -TCGA-61-1900 TCGA-61-1900-01 IIIB G3 No Macroscopic disease -TCGA-61-1901 TCGA-61-1901-01 IV G3 -TCGA-61-1904 TCGA-61-1904-01 IIIC G3 1-10 mm -TCGA-61-1906 TCGA-61-1906-01 IIIC G3 11-20 mm -TCGA-61-1907 TCGA-61-1907-01 IIIC G3 11-20 mm -TCGA-61-1910 TCGA-61-1910-01 IIC G3 1-10 mm -TCGA-61-1911 TCGA-61-1911-01 IIA G3 -TCGA-61-1913 TCGA-61-1913-01 IIIB G3 1-10 mm -TCGA-61-1914 TCGA-61-1914-01 IIIC G3 >20mm -TCGA-61-1915 TCGA-61-1915-01 IIC G3 -TCGA-61-1917 TCGA-61-1917-01 IIIB G3 -TCGA-61-1918 TCGA-61-1918-01 IV G3 No Macroscopic disease -TCGA-61-1919 TCGA-61-1919-01 IIIC G2 -TCGA-61-1995 TCGA-61-1995-01 IIIC G3 1-10 mm -TCGA-61-1998 TCGA-61-1998-01 IIIC G3 1-10 mm -TCGA-61-2000 TCGA-61-2000-01 IIIC G3 No Macroscopic disease -TCGA-61-2002 TCGA-61-2002-01 IIIC G3 11-20 mm -TCGA-61-2003 TCGA-61-2003-01 IIIC G2 1-10 mm -TCGA-61-2008 TCGA-61-2008-01 IIC G2 No Macroscopic disease -TCGA-61-2009 TCGA-61-2009-01 IIIC G3 11-20 mm -TCGA-61-2012 TCGA-61-2012-01 IIC G2 -TCGA-61-2016 TCGA-61-2016-01 IIIC G3 No Macroscopic disease -TCGA-61-2088 TCGA-61-2088-01 IIIC G3 No Macroscopic disease -TCGA-61-2092 TCGA-61-2092-01 IIIC G3 No Macroscopic disease -TCGA-61-2094 TCGA-61-2094-01 IIIC G3 -TCGA-61-2095 TCGA-61-2095-01 IIIC G2 No Macroscopic disease -TCGA-61-2097 TCGA-61-2097-01 IIC G2 1-10 mm -TCGA-61-2098 TCGA-61-2098-01 IIIC G2 11-20 mm -TCGA-61-2101 TCGA-61-2101-01 IIIC G2 11-20 mm -TCGA-61-2102 TCGA-61-2102-01 IIIC G3 -TCGA-61-2104 TCGA-61-2104-01 IIC G2 No Macroscopic disease -TCGA-61-2109 TCGA-61-2109-01 IIIC G3 >20mm -TCGA-61-2110 TCGA-61-2110-01 IIIC No Macroscopic disease -TCGA-61-2111 TCGA-61-2111-01 IV G3 -TCGA-61-2113 TCGA-61-2113-01 IIC G3 diff --git a/core/src/test/resources/clinical_data_small.txt b/core/src/test/resources/clinical_data_small.txt deleted file mode 100644 index db8ae95b853..00000000000 --- a/core/src/test/resources/clinical_data_small.txt +++ /dev/null @@ -1,18 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Sample identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING STRING NUMBER STRING NUMBER -#PATIENT SAMPLE SAMPLE PATIENT PATIENT PATIENT PATIENT -#1 1 1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like 1:DECEASED 31.77 NA NA -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like 1:DECEASED 17.18 NA NA -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA 1:DECEASED 32.56 1:Recurred/Progressed NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like 1:DECEASED 51.09 NA NA -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like 1:DECEASED 55.59 NA NA -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like 1:DECEASED 90.74 1:Recurred/Progressed NA - -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like 1:DECEASED 90.74 1:Recurred/Progressed NA \ No newline at end of file diff --git a/core/src/test/resources/clinical_data_small_PATIENT.txt b/core/src/test/resources/clinical_data_small_PATIENT.txt deleted file mode 100644 index cf2f416ec66..00000000000 --- a/core/src/test/resources/clinical_data_small_PATIENT.txt +++ /dev/null @@ -1,11 +0,0 @@ -#Patient Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 1 -PATIENT_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TEST-A2-A04P basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TEST-A1-A0SK basal-like 1:DECEASED 31.77 NA NA -TEST-A2-A0CM basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TEST-AR-A1AR basal-like 1:DECEASED 17.18 NA NA -TEST-B6-A0WX basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TEST-BH-A1F0 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA diff --git a/core/src/test/resources/clinical_data_small_PATIENT_datatype_error.txt b/core/src/test/resources/clinical_data_small_PATIENT_datatype_error.txt deleted file mode 100644 index 224e4e3a188..00000000000 --- a/core/src/test/resources/clinical_data_small_PATIENT_datatype_error.txt +++ /dev/null @@ -1,11 +0,0 @@ -#Patient Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING DOUBLE STRING BOOLEAN STRING TEXT -#1 1 1 1 1 1 -PATIENT_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TEST-A2-A04P basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TEST-A1-A0SK basal-like 1:DECEASED 31.77 NA NA -TEST-A2-A0CM basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TEST-AR-A1AR basal-like 1:DECEASED 17.18 NA NA -TEST-B6-A0WX basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TEST-BH-A1F0 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA diff --git a/core/src/test/resources/clinical_data_small_PATIENT_dupl_error.txt b/core/src/test/resources/clinical_data_small_PATIENT_dupl_error.txt deleted file mode 100644 index 49a67ac68eb..00000000000 --- a/core/src/test/resources/clinical_data_small_PATIENT_dupl_error.txt +++ /dev/null @@ -1,12 +0,0 @@ -#Patient Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 1 -PATIENT_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TEST-A2-A04P basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TEST-A1-A0SK basal-like 1:DECEASED 31.77 NA NA -TEST-A2-A0CM basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TEST-AR-A1AR basal-like 1:DECEASED 17.18 NA NA -TEST-B6-A0WX basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TEST-BH-A1F0 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA -TEST-BH-A1F0 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA diff --git a/core/src/test/resources/clinical_data_small_SAMPLE.txt b/core/src/test/resources/clinical_data_small_SAMPLE.txt deleted file mode 100644 index 2cd271522e3..00000000000 --- a/core/src/test/resources/clinical_data_small_SAMPLE.txt +++ /dev/null @@ -1,11 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient Identifier Sample identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 1 1 -SAMPLE_ID PATIENT_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TEST-A2-A04P TEST-A2-A04P basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TEST-A1-A0SK TEST-A1-A0SK basal-like 1:DECEASED 31.77 NA NA -TEST-A2-A0CM TEST-A2-A0CM basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TEST-AR-A1AR TEST-AR-A1AR basal-like 1:DECEASED 17.18 NA NA -TEST-B6-A0WX TEST-B6-A0WX basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TEST-BH-A1F0 TEST-BH-A1F0 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA diff --git a/core/src/test/resources/clinical_data_small_SAMPLE2.txt b/core/src/test/resources/clinical_data_small_SAMPLE2.txt deleted file mode 100644 index 61842e23858..00000000000 --- a/core/src/test/resources/clinical_data_small_SAMPLE2.txt +++ /dev/null @@ -1,11 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient Identifier Sample identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 1 1 -SAMPLE_ID PATIENT_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TEST-A2-A04P-02 TEST-A2-A04P basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TEST-A1-A0SK-02 TEST-A1-A0SK basal-like 1:DECEASED 31.77 NA NA -TEST-A2-A0CM-02 TEST-A2-A0CM basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TEST-AR-A1AR-02 TEST-AR-A1AR basal-like 1:DECEASED 17.18 NA NA -TEST-B6-A0WX-02 TEST-B6-A0WX basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TEST-BH-A1F0-02 TEST-BH-A1F0 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA diff --git a/core/src/test/resources/clinical_data_small_WRONG_NR_COLS.txt b/core/src/test/resources/clinical_data_small_WRONG_NR_COLS.txt deleted file mode 100644 index f8c4dcf93ea..00000000000 --- a/core/src/test/resources/clinical_data_small_WRONG_NR_COLS.txt +++ /dev/null @@ -1,10 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Sample identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING STRING NUMBER STRING NUMBER -#PATIENT SAMPLE SAMPLE PATIENT PATIENT PATIENT PATIENT -#1 1 1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like 1:DECEASED 31.77 NA NA -abc -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like 1:DECEASED 90.74 1:Recurred/Progressed NA \ No newline at end of file diff --git a/core/src/test/resources/clinical_data_small_missing_PATIENTID.txt b/core/src/test/resources/clinical_data_small_missing_PATIENTID.txt deleted file mode 100644 index 92ead76e514..00000000000 --- a/core/src/test/resources/clinical_data_small_missing_PATIENTID.txt +++ /dev/null @@ -1,11 +0,0 @@ -#Sample Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Sample identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 1 -SAMPLE_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TEST-A2-A04P basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TEST-A1-A0SK basal-like 1:DECEASED 31.77 NA NA -TEST-A2-A0CM basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TEST-AR-A1AR basal-like 1:DECEASED 17.18 NA NA -TEST-B6-A0WX basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TEST-BH-A1F0 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA diff --git a/core/src/test/resources/clinical_data_small_missing_SAMPLEID.txt b/core/src/test/resources/clinical_data_small_missing_SAMPLEID.txt deleted file mode 100644 index ded82759c51..00000000000 --- a/core/src/test/resources/clinical_data_small_missing_SAMPLEID.txt +++ /dev/null @@ -1,14 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Sample identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 1 1 -PATIENT_ID SAMPLE_IDentifier SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like 1:DECEASED 31.77 NA NA -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like 1:DECEASED 17.18 NA NA -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA 1:DECEASED 32.56 1:Recurred/Progressed NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like 1:DECEASED 51.09 NA NA -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like 1:DECEASED 55.59 NA NA diff --git a/core/src/test/resources/clinical_data_small_nonTCGA.txt b/core/src/test/resources/clinical_data_small_nonTCGA.txt deleted file mode 100644 index 4ea6c438295..00000000000 --- a/core/src/test/resources/clinical_data_small_nonTCGA.txt +++ /dev/null @@ -1,17 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Sample identifier Subtype description Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING STRING STRING NUMBER STRING NUMBER -#PATIENT SAMPLE SAMPLE PATIENT PATIENT PATIENT PATIENT -#1 1 1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TEST-A2-A04P TEST-A2-A04P-01 basal-like 1:DECEASED 17.97 1:Recurred/Progressed NA -TEST-A1-A0SK TEST-A1-A0SK-01 basal-like 1:DECEASED 31.77 NA NA -TEST-A2-A0CM TEST-A2-A0CM-01 basal-like 1:DECEASED 24.77 1:Recurred/Progressed NA -TEST-AR-A1AR TEST-AR-A1AR-01 basal-like 1:DECEASED 17.18 NA NA -TEST-B6-A0WX TEST-B6-A0WX-01 basal-like 1:DECEASED 21.45 1:Recurred/Progressed NA -TEST-BH-A1F0 TEST-BH-A1F0-01 basal-like 1:DECEASED 25.79 1:Recurred/Progressed NA -TEST-B6-A0I6 TEST-B6-A0I6-01 NA 1:DECEASED 32.56 1:Recurred/Progressed NA -TEST-BH-A18V TEST-BH-A18V-01 basal-like 1:DECEASED 51.09 NA NA -TEST-BH-A18Q TEST-BH-A18Q-01 basal-like 1:DECEASED 55.59 NA NA -TEST-BH-A18K TEST-BH-A18K-01 basal-like 1:DECEASED 90.74 1:Recurred/Progressed NA -TEST-BH-A18K TEST-BH-A18K-01 basal-like 1:DECEASED 90.74 1:Recurred/Progressed NA \ No newline at end of file diff --git a/core/src/test/resources/clinical_meta.txt b/core/src/test/resources/clinical_meta.txt deleted file mode 100644 index 275be052fd7..00000000000 --- a/core/src/test/resources/clinical_meta.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: study_tcga_pub -datatype: MIXED_ATTRIBUTES -genetic_alteration_type: CLINICAL -stable_id: clinical -show_profile_in_analysis_tab: true -profile_description: Clinical data -profile_name: Clinical data diff --git a/core/src/test/resources/cna_sample.txt b/core/src/test/resources/cna_sample.txt deleted file mode 100644 index e4e1bfbc8fb..00000000000 --- a/core/src/test/resources/cna_sample.txt +++ /dev/null @@ -1,3 +0,0 @@ -GENE_ID COMMON TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0156 TCGA-06-0157 TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0360 TCGA-08-0373 TCGA-08-0375 TCGA-08-0380 TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0522 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 -672 BRCA1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 -1 0 0 0 0 1 0 0 0 0 0 0 0 -1 0 -1 1 0 0 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 -675 BRCA2 0 0 0 -1 -1 0 -1 -1 0 0 0 0 0 0 0 -1 0 0 -1 -1 0 0 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 0 0 0 -1 -1 0 0 0 0 0 0 0 -1 0 -1 -1 0 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 0 -1 0 -1 0 -1 0 0 0 0 -1 0 0 0 0 -1 -1 0 -1 -1 0 0 0 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 0 -1 -1 0 -1 -1 -1 -1 -1 -1 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 0 0 0 0 -1 -1 0 -1 0 0 0 0 0 -1 -1 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 -1 0 0 0 -1 -1 -1 0 0 0 0 -1 0 0 0 0 0 -1 0 0 0 0 0 -1 -1 0 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 0 -1 0 0 0 0 \ No newline at end of file diff --git a/core/src/test/resources/cna_sample2.txt b/core/src/test/resources/cna_sample2.txt deleted file mode 100644 index c2a7963acff..00000000000 --- a/core/src/test/resources/cna_sample2.txt +++ /dev/null @@ -1 +0,0 @@ -GENE_ID COMMON TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 672 BRCA1 2 2 2 2 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 675 BRCA2 0 0 0 0 0 0 0 0 2 2 2 2 2 2 2 2 2 2 0 0 \ No newline at end of file diff --git a/core/src/test/resources/cna_test.txt b/core/src/test/resources/cna_test.txt deleted file mode 100644 index 6819c611c0a..00000000000 --- a/core/src/test/resources/cna_test.txt +++ /dev/null @@ -1,52 +0,0 @@ -Name Hugo_Symbol TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 - 1 3 6 7 9 10 11 14 21 24 27 28 33 34 -Barry TESTAKT1 0 0 0 -1 0 -1 -1 0 0 -1 0 0 0 -1 -Gaddy Broad TESTAKT1 0 0 0 -1 0 -1 -1 0 0 -1 0 0 0 -Gaddy HMS TESTAKT1 0 0 0 -1 0 -1 -1 0 0 -1 0 0 0 -1 -Gaddy MSKCC TESTAKT1 0 0 -1 0 -1 -1 0 0 -1 0 0 0 -1 -Gaddy Stanford TESTAKT1 0 0 0 -1 0 -1 -1 0 0 -1 0 0 0 -1 -Jun TESTAKT1 0 0 0 -1 0 -1 -1 0 0 -1 0 0 0 -1 -Barry TESTAKT2 0 0 0 0 1 0 0 0 1 0 0 -1 0 0 -Gaddy Broad TESTAKT2 0 0 0 0 1 0 0 0 1 0 0 -1 0 -Gaddy HMS TESTAKT2 0 0 0 0 1 0 0 0 1 0 0 -1 0 0 -Gaddy MSKCC TESTAKT2 0 0 0 1 0 0 0 1 0 0 -1 0 0 -Gaddy Stanford TESTAKT2 0 0 0 0 1 0 0 0 1 0 0 -1 0 0 -Jun TESTAKT2 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 -Barry TESTAKT3 2 2 2 1 1 -2 0 0 0 1 0 1 0 0 -Gaddy Broad TESTAKT3 0 0 0 0 0 0 0 0 0 1 0 1 0 -Gaddy HMS TESTAKT3 1 0 0 0 0 0 0 0 0 1 0 1 0 0 -Gaddy MSKCC TESTAKT3 1 0 0 0 0 0 0 0 1 0 1 0 0 -Gaddy Stanford TESTAKT3 0 0 0 0 0 0 0 0 0 1 0 1 0 0 -Jun TESTAKT3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -Barry TESTARAF -Gaddy Broad TESTARAF -Gaddy HMS TESTARAF -Gaddy MSKCC TESTARAF -Gaddy Stanford TESTARAF -Jun TESTARAF 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -Barry TESTATM 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 -Gaddy Broad TESTATM 0 0 0 0 0 0 0 -1 0 -1 0 0 0 -Gaddy HMS TESTATM 0 0 0 0 0 0 0 -1 0 -1 0 0 0 0 -Gaddy MSKCC TESTATM 0 0 0 0 0 0 -1 0 -1 0 0 0 0 -Gaddy Stanford TESTATM 0 0 0 0 0 0 0 -1 0 -1 0 0 0 0 -Jun TESTATM 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 -Barry TESTBRAF 1 1 1 0 1 0 0 1 1 0 1 -1 1 1 -Gaddy Broad TESTBRAF 1 1 1 0 1 0 0 1 1 -1 1 -1 1 -Gaddy HMS TESTBRAF 1 1 1 0 1 0 0 1 1 -1 1 -1 1 1 -Gaddy MSKCC TESTBRAF 1 1 0 1 0 0 1 1 -1 1 -1 1 1 -Gaddy Stanford TESTBRAF 1 1 1 0 1 0 0 1 1 -1 1 -1 1 1 -Jun TESTBRAF 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 -Barry TESTBRCA1 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 -Gaddy Broad TESTBRCA1 0 0 0 0 0 0 0 0 0 0 0 0 -1 -Gaddy HMS TESTBRCA1 -1 0 0 0 0 0 0 0 0 0 0 0 -1 0 -Gaddy MSKCC TESTBRCA1 -1 0 0 0 0 0 0 0 0 0 0 -1 0 -Gaddy Stanford TESTBRCA1 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 -Jun TESTBRCA1 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 -Barry TESTBRCA2 0 0 -1 -1 0 -1 -1 0 0 0 0 0 -1 -1 -Gaddy Broad TESTBRCA2 0 0 -1 -1 0 -1 -1 0 0 0 0 0 -1 -Gaddy HMS TESTBRCA2 0 0 -1 -1 0 -1 -1 0 0 0 0 0 -1 -1 -Gaddy MSKCC TESTBRCA2 0 0 -1 0 -1 -1 0 0 0 0 0 -1 -1 -Gaddy Stanford TESTBRCA2 0 0 -1 -1 0 -1 -1 0 0 0 0 0 -1 -1 -Jun TESTBRCA2 0 0 -1 -1 0 0 -1 0 0 0 0 0 -1 -1 -# This line references AKT1 again. However, since we have already loaded data for AKT1, it will be ignored -Barry TESTAKT1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 diff --git a/core/src/test/resources/cna_test2.txt b/core/src/test/resources/cna_test2.txt deleted file mode 100644 index bffc04322f7..00000000000 --- a/core/src/test/resources/cna_test2.txt +++ /dev/null @@ -1,15 +0,0 @@ -Hugo_Symbol TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 -AKT1 0 0 0 -1 0 -1 -1 0 0 -1 0 0 0 -1 -AKT2 0 0 0 0 1 0 0 0 1 0 0 -1 0 0 -AKT3 2 2 2 1 1 -2 0 0 0 1 0 1 0 0 -ARAF -ATM 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 -BRAF 1 1 1 0 1 0 0 1 1 0 1 -1 1 1 -BRCA1 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 -BRCA2 0 0 -1 -1 0 -1 -1 0 0 0 0 0 -1 -1 -# This line references AKT1 again. However, since we have already loaded data for AKT1, it will be ignored -AKT1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 -# This line references two genes. It will be ignored -AKT1 /// AKT2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 -# This line references an unknown gene. It will also be ignore --2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 \ No newline at end of file diff --git a/core/src/test/resources/coadread_tcga.txt b/core/src/test/resources/coadread_tcga.txt deleted file mode 100644 index a05744c35d8..00000000000 --- a/core/src/test/resources/coadread_tcga.txt +++ /dev/null @@ -1,4 +0,0 @@ -type_of_cancer: coadread -cancer_study_identifier: coadread_tcga -name: Colon and Rectum Adenocarcinoma (TCGA, Provisional) -description: TCGA Colon and Rectum Adenocarcinoma, containing 581 samples; raw data at the NCI. diff --git a/core/src/test/resources/correct_data_mRNA_ZbyNorm.txt b/core/src/test/resources/correct_data_mRNA_ZbyNorm.txt deleted file mode 100644 index 78a328ec3f9..00000000000 --- a/core/src/test/resources/correct_data_mRNA_ZbyNorm.txt +++ /dev/null @@ -1,6 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-02-0001-01C-01R TCGA-02-0002-01A-01R TCGA-02-0003-01A-01R TCGA-02-0004-01A-01R TCGA-02-0005-01A-01D-0182-01 TCGA-02-0006-01A-01D-0182-01 -AACS 65985 1.2247 0.0000 0.0000 -1.2247 1.2247 1.2247 -ELMO2 63916 2.5981 -0.8660 -0.8660 0.8660 0.8660 4.3301 -TP53 7157 NA NA NA NA NA NA -RPS11 6205 -0.8660 2.5981 0.8660 0.8660 -0.8660 -2.5981 -PNMA1 9240 0.4330 0.8660 -0.8660 0.8660 -0.8660 1.7321 diff --git a/core/src/test/resources/data_CNA_sample.txt b/core/src/test/resources/data_CNA_sample.txt deleted file mode 100644 index f225740b84e..00000000000 --- a/core/src/test/resources/data_CNA_sample.txt +++ /dev/null @@ -1,3 +0,0 @@ -GeneId Hugo_Symbol TCGA-02-0001-01 TCGA-02-0003-01 TCGA-02-0004-01 TCGA-02-0006-01 -999999672 TESTBRCA1 -2 0 1 0 -999999675 TESTBRCA2 0 2 0 -1 \ No newline at end of file diff --git a/core/src/test/resources/data_GISTIC_GENE_AMPS.txt b/core/src/test/resources/data_GISTIC_GENE_AMPS.txt deleted file mode 100755 index ad8cc5796c8..00000000000 --- a/core/src/test/resources/data_GISTIC_GENE_AMPS.txt +++ /dev/null @@ -1,21 +0,0 @@ -index chromosome region_start region_end peak_start peak_end enlarged_peak_start enlarged_peak_end n_genes_in_region genes_in_region n_genes_in_peak genes_in_peak n_genes_on_chip genes_on_chip top 3 amp cytoband q_value -1 1 157735626 172666629 161041735 161066590 161033015 161098482 6 NIT1,PFDN2,DEDD,PVRL4,KLHDC9,ARHGAP30, 4 PFDN2,PVRL4,KLHDC9,ARHGAP30, 1 1q23.3 6.4603e-06 -2 1 39483129 41938903 40215015 40534842 39531714 40539076 17 BMP8B,MYCL1,PPT1,PABPC4,PPIE,CAP1,MACF1,HEYL,HPCAL4,TRIT1,OXCT2,NT5C1A,MFSD2A,BMP8A,KIAA0754,SNORA55,PPIEL, 8 BMP8B,MYCL1,PPT1,PPIE,CAP1,TRIT1,OXCT2,MFSD2A, 1 1p34.2 0.001284 -3 3 11594930 12872442 12484849 12485147 12483451 12485886 0 [PPARG] 0 [PPARG] 1 3p25.2 0.00019113 -4 4 1838129 2229435 1924276 2009443 1835546 2085858 9 hsa-mir-943,LETM1,WHSC1,WHSC2,NAT8L,POLN,C4orf48,SCARNA22,MIR943, 5 hsa-mir-943,WHSC1,WHSC2,SCARNA22,MIR943, 1 4p16.3 0.08264 -5 6 17734523 23700182 21724394 21808480 19954987 21876654 5 E2F3,SOX4,CDKAL1,MBOAT1,LINC00340, 1 LINC00340, 1 6p22.3 2.5141e-11 -6 6 107208482 107515030 107310106 107446857 107302955 107451531 2 C6orf203,BEND3, 2 C6orf203,BEND3, 1 6q21 0.013301 -7 7 17799600 20203315 17799600 17923402 15890949 22691865 32 hsa-mir-1183,hsa-mir-3146,hsa-mir-1302-6,AHR,ITGB8,SP4,TWIST1,DNAH11,HDAC9,RAPGEF5,AGR2,SNX13,SOSTDC1,TSPAN13,BZW2,CDCA7L,ANKMY2,AGR3,PRPS1L1,TWISTNB,SP8,FERD3L,RPL23P8,TMEM196,STEAP1B,ABCB5,MACC1,ISPD,MIR3146,LOC100506025,LRRC72,LOC100506178, 2 AHR,SNX13, 1 7p21.1 0.2006 -8 8 98464129 103731682 101710214 101883378 101195500 102353303 9 SPAG1,YWHAZ,RNF19A,PABPC1,ZNF706,ANKRD46,SNX31,FLJ42969,MIR4471, 1 PABPC1, 1 8q22.3 0.00028162 -9 8 41885433 42103221 41885433 42093818 41413454 42099360 8 hsa-mir-486,ANK1,PLAT,KAT6A,AP3M2,AGPAT6,NKX6-3,MIR486, 3 PLAT,KAT6A,AP3M2, 1 8p11.21 0.2006 -10 8 127588483 129789168 128217188 128424792 127581610 129787426 14 hsa-mir-1208,hsa-mir-1207,hsa-mir-1205,hsa-mir-1204,MYC,POU5F1B,PVT1,LOC727677,MIR1205,MIR1206,MIR1207,MIR1204,MIR1208,PCAT1, 1 POU5F1B, 1 8q24.21 0.00812 -11 9 20015777 20953636 20015777 20951647 20005048 20953233 6 hsa-mir-491,MLLT3,KIAA1797,MIR491,MIR4473,MIR4474, 6 hsa-mir-491,MLLT3,KIAA1797,MIR491,MIR4473,MIR4474, 1 9p21.3 0.037143 -12 10 5611426 5844868 5611426 5834270 4199857 9011746 38 hsa-mir-3155,ATP5C1,CALML3,AKR1C4,AKR1C1,AKR1C2,GATA3,GDI2,IL2RA,IL15RA,ITIH2,PFKFB3,PRKCQ,AKR1C3,NET1,KIN,CALML5,ANKRD16,FAM208B,SFMBT2,ASB13,TUBAL3,ITIH5,AKR1E2,TAF3,FBXO18,RBM17,UCN3,LOC338588,AKR1CL1,tAKR,LOC399715,FLJ45983,LOC439949,LOC100216001,MIR3155A,LOC100507127,MIR3155B, 3 GDI2,FAM208B,ASB13, 1 10p15.1 0.021704 -13 11 67770619 70421299 69842524 70020966 69399649 70025077 6 CCND1,FGF3,FGF4,FGF19,ANO1,ORAOV1, 1 ANO1, 1 11q13.3 0.00064088 -14 12 68957251 73655363 69164646 69249221 69124408 70167164 16 hsa-mir-1279,CPM,LYZ,MDM2,YEATS4,CCT2,FRS2,CPSF6,SLC35E3,NUP107,RAB3IP,BEST3,LRRC10,MIR1279,MIR3913-2,MIR3913-1, 2 CPM,MDM2, 1 12q15 1.3749e-06 -15 12 1987245 2085166 2060580 2081572 889902 8695310 132 hsa-mir-141,APOBEC1,C1R,C1S,C3AR1,CACNA1C,CCND2,CD4,CD9,CD27,CHD4,ATN1,ENO2,FGF6,FKBP4,FOXM1,GAPDH,GNB3,KCNA1,KCNA5,KCNA6,LAG3,LTBR,NDUFA9,NINJ2,NOP2,NTF3,PTMS,PTPN6,PEX5,RAD52,KDM5A,SCNN1A,SLC2A3,SLC6A12,SLC6A13,VAMP1,TEAD4,TNFRSF1A,TPI1,TULP3,VWF,FGF23,USP5,MLF2,DYRK4,CD163,GDF3,CLSTN3,NCAPD2,LPCAT3,LRRC23,EMG1,LEPREL2,AKAP3,RAD51AP1,TSPAN9,PHB2,ERC1,IFFO1,NECAP1,CLEC4E,GALNT8,GPR162,COPS7A,CLEC4A,ING4,MRPL51,C1RL,TAPBPL,FAM90A1,PLEKHG6,FOXJ2,ITFG2,PRMT8,PARP11,ANO2,C12orf4,C12orf5,LPAR5,WNK1,ADIPOR2,NANOG,WNT5B,CDCA3,C12orf32,NRIP2,RBP5,CCDC77,ACRBP,SPSB2,EFCAB4B,CACNA2D4,CLEC6A,C12orf57,SLC2A14,FBXL14,CLEC4C,ZNF384,DSTNP2,C12orf53,DCP1B,MATL2963,CD163L1,RPL13P5,B4GALNT3,LOC283440,CLEC4D,ACSM4,DPPA3,NANOGNB,LOC389634,MIR141,MIR200C,IQSEC3,ZNF705A,FAM66C,LOC574538,POU5F1P3,FAM86FP,LRTM2,SCARNA12,SCARNA11,FAM138D,LOC678655,SCARNA10,LOC100271702,LOC100288778,LOC100292680,MIR3649,LOC100507424,LOC100652846, 1 DCP1B, 1 12p13.33 0.20449 -16 17 37625623 38369419 37820992 37899688 37816079 37904211 8 ERBB2,GRB7,PNMT,TCAP,STARD3,MIEN1,PGAP3,MIR4728, 8 ERBB2,GRB7,PNMT,TCAP,STARD3,MIEN1,PGAP3,MIR4728, 1 17q12 4.6529e-05 -17 17 27397974 27884697 27684379 27812225 987221 80917016 1386 hsa-mir-3186,hsa-mir-1250,hsa-mir-4316,hsa-mir-636,hsa-mir-635,hsa-mir-548d-2,hsa-mir-634,hsa-mir-4315-2,hsa-mir-633,hsa-mir-21,hsa-mir-301a,hsa-mir-142,hsa-mir-3185,hsa-mir-196a-1,hsa-mir-10a,hsa-mir-1203,hsa-mir-152,hsa-mir-4315-1,hsa-mir-2117,hsa-mir-2909,hsa-mir-632,hsa-mir-365-2,hsa-mir-3184,hsa-mir-144,hsa-mir-1180,hsa-mir-33b,hsa-mir-1288,hsa-mir-548h-3,hsa-mir-744,hsa-mir-4314,hsa-mir-324,hsa-mir-497,hsa-mir-1253,hsa-mir-212,hsa-mir-22,hsa-mir-3183,AANAT,ABR,ACACA,ACADVL,ACCN1,ACLY,ACOX1,ACTG1,ADORA2B,AP2B1,ALDH3A1,ALDH3A2,ALDOC,ALOX12,ALOX12B,ALOX12P2,ALOX15,ALOX15B,AOC2,BIRC5,APOH,ARL4D,ARHGDIA,ARRB2,ASGR1,ASGR2,ASPA,ATP1B2,ATP2A3,ATP5G1,ATP6V0A1,BLMH,BRCA1,C1QBP,FMNL1,CA4,CACNB1,CACNG1,CD7,CD68,CD79B,CDC6,CDC27,CDK3,CHAD,CHD3,CHRNB1,CHRNE,CLTC,CCR7,CNP,COL1A1,COX10,COX11,CPD,CLDN7,CRHR1,CRK,CRYBA1,CSF3,CSH1,CSH2,CSHL1,CSNK1D,SLC25A10,CTNS,CYB561,ACE,DDX5,DHX8,DLG4,DLX3,DLX4,DNAH9,DPH1,DRG2,DUSP3,DVL2,EFNB3,EIF4A1,EIF5A,ENO3,ERBB2,ERN1,ETV4,EVI2A,EVI2B,EVPL,EZH1,BPTF,FASN,FDXR,FGF11,FOXJ1,FOXO3B,FLII,FLOT2,GAST,FZD2,G6PC,GAA,GALK1,GCGR,KAT2A,GFAP,GH1,GH2,GIP,GNGT2,GP1BA,CCR10,UTS2R,GPS1,GPS2,GRB2,GRB7,GRN,GRIN2C,GUCY2D,H3F3B,HCRT,HIC1,HLF,HOXB1,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HSD17B1,ICAM2,ICT1,IFI35,IGFBP4,FOXK2,ITGA2B,ITGA3,ITGAE,ITGB3,ITGB4,JUP,KCNJ2,KCNJ12,KCNJ16,KPNB1,KPNA2,KRT9,KRT10,KRT12,KRT13,KRT14,KRT15,KRT16,KRT17,KRT19,KRT31,KRT32,KRT33A,KRT33B,KRT34,KRT35,LASP1,LGALS3BP,LGALS9,LHX1,LIG3,LLGL2,LLGL1,LPO,NBR1,MAFG,MAPT,ADAM11,MEIS3P1,MAP3K3,MEOX1,MFAP4,MLLT6,MNT,MPO,MPP2,MPP3,TRIM37,MYH1,MYH2,MYH3,MYH4,MYH8,MYH10,MYL4,MYO1C,MYO1D,NAGLU,NEUROD2,NF1,NFE2L1,NGFR,NME1,NME2,NMT1,NOS2,NPTX1,NSF,NUP88,OMG,OR1D2,OR3A1,OR3A2,P2RX1,P2RX5,P4HB,PAFAH1B1,PDE6G,PDK2,PECAM1,SERPINF1,PER1,PEX12,PFAS,PFN1,PHB,PITPNA,PLD2,SERPINF2,PMP22,PNMT,SEPT4,POLR2A,MED1,PPY,PRKAR1A,PRKCA,MAPK7,MAP2K3,MAP2K6,PRPSAP1,PRPSAP2,PSMB3,PSMB6,PYY,PSMC5,PSMD3,PSMD11,PSMD12,PYCR1,PCYT2,RAB5C,RAC3,RAD51C,RAD51D,RARA,RCVRN,RFNG,RPA1,RPL19,RPL23A,RPL26,RPL27,RPL38,MRPL12,RPS6KB1,SCN4A,SCO1,CCL1,CCL2,CCL3,CCL3L1,CCL4,CCL5,CCL7,CCL8,CCL11,CCL13,CCL14,CCL15,CCL16,CCL18,CCL23,SDF2,SEC14L1,SECTM1,MAP2K4,SRSF1,SRSF2,SGCA,SGSH,SH3GL1P1,SH3GL1P2,SHBG,SHMT1,SLC2A4,SLC4A1,SLC6A4,SMARCD2,SMARCE1,SUMO2,SOX9,SOX15,SP2,SREBF1,SRP68,SSTR2,STAT3,STAT5A,STAT5B,SUPT4H1,SUPT6H,VAMP2,TADA2A,TBCD,TBX2,HNF1B,MLX,THRA,TIMP2,TK1,TNFAIP1,TOP2A,TOP3A,TP53,DNAJC7,TUBG1,UBB,UBE2G1,UBTF,TRPV1,VTN,WNT3,WNT9B,YWHAE,ZNF18,PCGF2,TRIM25,VEZF1,RNF112,ZNF207,ZNF232,TAF15,RND2,COIL,AKAP1,EPX,AXIN2,OR1A1,OR1D5,OR1E1,OR1E2,OR1G1,OR3A3,PIP4K2B,SLC25A11,SPOP,DOC2B,FOXN1,PPM1D,CNTNAP1,GAS7,DGKE,COPS3,CBX4,TCAP,SCARF1,SKAP1,DNAH17,AOC3,BECN1,KRT38,KRT37,KRT36,TNK1,ABCC3,MYH13,TNFSF13,TNFSF12,RGS9,GALR2,TMEM11,KSR1,CDK5R1,SPHK1,CACNA1G,HAP1,MAP3K14,SOCS3,TM4SF5,SPAG9,SLC13A2,UNC119,USP6,MTMR4,SLC16A6,SLC16A5,SLC16A3,RABEP1,SYNGR2,HGS,KCNAB3,AURKB,TIAF1,NOG,BZRAP1,CYTH1,ZNHIT3,GLP2R,EFTUD2,RPL23,SLC9A3R1,COG1,RECQL5,NTN1,STX8,PIGL,PGS1,TBX4,RPH3AL,FXR2,NPEPPS,MPDU1,GOSR1,SPAG7,CCL4L1,GOSR2,NR1D1,NCOR1,TRAF4,AATK,KIAA0100,ULK2,CCDC144A,ACAP1,TBKBP1,KIAA0195,EIF4A3,PLEKHM1,KIAA0753,MED24,LRRC37A,MRC2,SGSM2,ARHGAP44,HELZ,HS3ST3B1,HS3ST3A1,MED13,HDAC5,TOM1L1,GJC1,TOB1,ALYREF,PSME3,EIF1,NBR2,SLC35B1,DCAF7,CALCOCO2,RAMP2,ABCA10,ABCA9,ABCA8,PEMT,BAIAP2,CLEC10A,ATP5H,HOXB13,VAT1,APPBP2,MYBBP1A,FBXW10,PRPF8,LEPREL4,ST6GALNAC2,HEXIM1,SPAG5,TRIM16,IGF2BP1,GNA13,CCT6B,RAI1,KIF1C,GRAP,SEPT9,CD300C,C1QL1,RUNDC3A,STARD3,CBX1,RAB40B,TLK2,DDX52,DUSP14,KAT7,AKAP10,POLG2,NXPH3,SNF8,SYNRG,CD300A,TMC6,DDX42,GABARAP,CASC3,IKZF3,ZNF652,PPM1E,NLRP1,ARHGEF15,ARSG,EPN2,AZI1,SARM1,RAP1GAP2,CAMTA2,GPATCH8,KDM6B,ZZEF1,GGA3,MPRIP,JMJD6,EXOC7,KIAA0664,SMG6,WSCD1,USP22,CTDNEP1,KCNH4,ABCA6,ABCA5,TNFRSF13B,KCTD2,SUZ12,MMD,PIK3R5,WBP2,CDC42EP4,C17orf81,FAM215A,PPY2,PYY2,SHPK,AIPL1,FSCN2,NOL11,DHRS7B,KRT23,RNF167,TMEM98,POLDIP2,TBC1D29,TANC2,WSB1,NAT9,SENP3,OR1A2,PITPNC1,ERAL1,NARF,AATF,OR4D1,SNORD4B,SNORD4A,SNORA67,SNORD49A,SNORD42B,SNORD42A,PELP1,B9D1,CACNG5,CACNG4,TUBG2,TMEM97,NKIRAS2,CCDC56,GIT1,RANGRF,SAP30BP,PSMC3IP,SNX11,TIMM22,TBX21,NT5C,SOCS7,CDR2L,TAX1BP3,MINK1,GEMIN4,SOST,MED31,DERL2,FAM18B1,GLOD4,MRPS7,YBX2,UTP18,RNFT1,HN1,MYO15A,TUBD1,DCXR,RAPGEFL1,TACO1,ABI3,COPZ2,MRPL27,PIPOX,AMZ2,ARL17A,CRLF3,TRPV2,ANKFY1,ANAPC11,SIRT7,SLC25A39,MRPS23,PTRH2,RASD1,NLK,LUC7L3,HIGD1B,CDK12,INPP5K,KRT20,NLE1,FAM64A,SDK2,XAF1,FNDC8,FAM20A,C17orf59,MBTD1,BCAS3,TMEM104,CWC25,ALKBH5,RNF43,TTC19,MKS1,LINC00483,C17orf80,CCDC40,EPN3,WIPI1,GPR172B,LRRC37A4,MED9,SLFN12,WRAP53,PNPO,KLHL11,RNMTL1,SMG8,SLC47A1,TMEM100,VPS53,RHOT1,RSAD1,C17orf79,LRRC59,C17orf85,MSX2P1,NPLOC4,TSR1,C17orf63,PRR11,ADAP2,ST6GALNAC1,UTP6,TEX2,GSDMB,GPRC5C,TEX14,WDR45L,DHX33,CA10,NT5M,ATXN7L3,C17orf48,CCDC47,PLSCR3,PLXDC1,LYZL6,CBX8,ZNF286A,ZNF287,MIF4GD,INTS2,CASKIN2,RPTOR,NUFIP2,ZNF624,TAOK1,NLGN2,BAHCC1,USP36,ARHGAP23,PHF12,ZBTB4,RNF213,TNRC6C,CXCL16,TRAPPC1,PCTP,SCPEP1,ALOXE3,SLC25A19,ELAC2,FKBP10,SRR,UBE2O,HEATR6,DUS1L,FN3K,XYLT2,C17orf75,NXN,DNAI2,TEKT3,SMURF2,ENGASE,SPATA20,MRPL38,UBE2Z,WNK4,C17orf53,MIS12,C17orf39,ASPSCR1,METTL16,TMUB2,CARD14,DHX58,PHF23,MMP28,DHRS11,MFSD11,PRR15L,C17orf62,ARMC7,CHMP6,RHBDF2,DHX40,FN3KRP,C17orf101,TEFM,ZNF750,ACBD4,FAM57A,DCAKD,GGNBP2,NUP85,ATAD5,MRM1,PLEKHH3,MYO15B,FAM106A,CTC1,DBF4B,MYO19,ACSF2,C17orf70,CDK5RAP3,SP6,COASY,SRCIN1,AARSD1,LIMD2,KCNH6,FAM117A,NDEL1,VMP1,KRTAP1-3,KRTAP1-1,KRTAP9-9,KRTAP4-6,KRTAP2-1,PITPNM3,LRRC48,TMEM93,TTC25,RILP,TEKT1,KRTAP4-12,RAB34,TSPAN10,KRTAP1-5,KRTAP3-1,KRTAP3-2,KRTAP9-2,KRTAP9-3,KRTAP9-8,KRTAP17-1,GSG2,BRIP1,MYCBPAP,QRICH2,NSRP1,PPP1R1B,TBC1D3F,ZMYND15,CAMKK1,RPAIN,RNF135,MIEN1,MRPL45,VPS25,TMEM107,LSMD1,TMEM101,PRAC,RAB11FIP4,NEURL4,GHDC,KRTAP4-4,ZNF594,KIF2B,HES7,USP32,PPP1R9B,SPATA22,CBX2,MGC12916,TXNDC17,FAM104A,CORO6,TNS4,FBXL20,MIR22HG,MGC16275,KRTAP9-4,KRTAP4-1,KRTAP4-5,KRTAP4-3,KRTAP4-2,KRTAP3-3,KRTAP2-4,FBF1,UNK,SSH2,TP53I13,IFT20,LRRC46,SCRN2,AOC4,CEP95,TRIM47,ANKRD40,ZNF830,SLFN11,RASL10B,ATPAF2,TMEM88,STRADA,C17orf72,SPECC1,G6PC3,ASB16,MAFG-AS1,OTOP2,PGAP3,MYOCD,PIGS,TTYH2,HSPB9,ORMDL3,CDRT7,CDRT15P1,SAT2,PLCD3,SLC46A1,TMEM106A,LRRC37B,CYGB,RNF157,SMYD4,OSBPL7,C1QTNF1,NT5C3L,ABHD15,TLCD1,PPP1R27,CNTROB,FTSJ3,RFFL,RPL29P2,METTL23,HSF5,OR4D2,MSI2,SLC38A10,CANT1,USH1G,CD300LB,KIF19,ZPBP2,CYB5D1,OVCA2,USP43,KRBA2,C17orf64,C17orf46,HEXIM2,LSM12,CCDC43,CNTD1,TMEM132E,WFIKKN2,FLJ40194,B4GALNT2,SPACA3,SGK494,SEZ6,ANKRD13B,SLC43A2,CYB5D2,C17orf49,ZFP3,GGT6,SPNS2,C17orf57,MRPL10,WDR81,TBC1D16,AFMID,GJD3,KRT222,KRT40,C17orf76-AS1,ZSWIM7,SMCR7,SLC5A10,DYNLL2,SMCR5,SMCR8,SMCR9,MGAT5B,TOM1L2,C17orf56,B3GNTL1,RBFOX3,CD300LF,C17orf77,DNAH2,RTN4RL1,TCAM1P,EFCAB3,SLC47A2,CDRT15,WDR16,CCDC42,PIK3R6,ODF4,C17orf50,SLFN13,SLC35G3,UNC45B,LOC146880,CD300LG,KIF18B,RUNDC1,EME1,TMEM199,PROCA1,DHRS13,KCTD11,C17orf69,LOC147093,NOTUM,TMC8,TRIM16L,LRRC37BP1,WIPF2,KRT25,TMEM99,ANKFN1,MARCH10,MFSD6L,SLFN5,NAGS,FAM134C,TMEM92,PHOSPHO1,RHBDL3,TRPV3,SLC16A11,FBXO39,IMP5,KRT28,USP32P1,KRT24,CEP112,DHRS7C,FAM18B2,CENPV,FLCN,PLD6,ARHGAP27,ZNF385C,SAMD14,C17orf108,SLC16A13,C17orf74,STRA13,LRRC45,SLC39A11,AMZ2P1,TRIM65,UNC13D,RDM1,SPNS3,USP32P2,GAS2L2,STH,MTVR2,STXBP4,LOC253962,TBC1D28,C17orf61,TAC4,MYADML2,BCL6B,CDRT15L2,C17orf103,NPB,C17orf66,LINC00469,FADS6,C17orf28,TSEN54,FAM100B,TMEM235,CCDC57,HEXDC,LOC284009,VMO1,C17orf58,MILR1,LOC284023,LINC00324,FLJ34690,CDRT4,CCDC144B,KIAA1267,C17orf105,FAM171A2,C17orf104,TTLL6,LOC284080,C17orf47,KRT18P55,NEK8,PIGW,C17orf78,LOC284100,CISD3,GSDMA,SLC13A5,TMEM102,KRT42P,PTRF,FAM27L,FLJ36000,SLC26A11,ENDOV,GDPD1,C17orf89,LINC00482,TMEM105,LGALS9B,METRNL,TUSC5,KLHL10,RAB37,LOC339166,TMEM95,METTL2A,CCDC144NL,C17orf65,C17orf67,ENPP7,C17orf90,CCDC137,ARL16,LOC339240,C17orf51,MSL1,CD300E,SMTNL2,ALOX15P1,NACA2,KRT27,SLFN14,FLJ43826,STAC2,OTOP3,SKA2,CCL14-CCL15,CCDC144C,FAM195B,GPR142,TBC1D26,ZACN,KRT26,FAM101B,HOXB13-AS1,HILS1,CDRT1,SPEM1,EFCAB5,LRRC37A3,RNF126P1,GLTPD2,INCA1,SCIMP,C17orf100,SPDYE4,TMEM220,SHISA6,FAM211A,TMIGD1,CCL4L2,C17orf98,LOC388387,CCDC103,RPRML,YPEL2,C17orf82,BTBD17,AATK-AS1,FLJ43681,OR3A4P,ARL5C,KRT39,SLC25A35,MYO18A,C17orf97,MED11,KRT16P2,GRAPL,C17orf102,LOC400604,KCNJ2-AS1,LINC00511,LOC400620,FLJ45079,TEX19,MGC57346,CUEDC1,LOC404266,MIR10A,MIR132,MIR142,MIR144,MIR152,MIR193A,MIR195,MIR196A1,MIR21,MIR212,MIR22,MIR301A,TNFSF12-TNFSF13,TBC1D3B,TBC1D3C,CCL3L3,MXRA7,RNASEK,TBC1D3P5,SUZ12P,LOC440434,GPR179,TBC1D3P2,PLEKHM1P,LOC440461,FLJ90757,MIR324,MIR338,LRRC37A2,FBXO47,MIR423,ARGFXP2,DPRXP4,MIR451A,MIR497,SNORA21,CPSF4L,C17orf109,SLC35G6,RNF222,PIRT,LOC644172,LOC644246,CDRT15P2,FAM83G,KRT16P3,EVPLL,LOC645638,SEBOX,SNORA48,SNORD10,OR1D4,KRTAP4-11,MRPL45P2,TBC1D3P1-DHX40P1,LOC653653,TBC1D3G,LGALS9C,NME1-NME2,LINC00338,SCARNA20,SCARNA21,SCARNA16,SNORA76,SNORD1A,SNORD1B,SNORD1C,SNORA59B,SNORA59A,SNORD7,SNORD49B,SNORD65,SNORD91A,SNORD91B,SNORD104,MIR33B,MIR632,MIR634,MIR635,MIR636,MIR657,BHLHA9,TLCD2,KRTAP4-8,KRTAP2-2,KRTAP9-1,LOC728392,NSFP1,FLJ45513,ZNF286B,LOC729683,TBC1D3,TBC1D3H,LOC730755,PRCD,MIR454,SNORD124,SNORA38B,MIR744,MIR365B,LOC100128288,LOC100128977,FAM106CP,LOC100130148,C17orf107,LOC100130581,C17orf110,LOC100130950,LOC100131096,LOC100131347,CD300LD,DBIL5P,KRTAP4-9,KRTAP4-7,LOC100133991,KCNJ18,TEN1,C17orf99,C17orf96,LOC100190938,LOC100287042,LOC100289255,LOC100294362,MIR1288,MIR1253,MIR1203,MIR1250,MIR1180,LOC100306951,MIR2117,MIR3183,MIR4316,MIR3065,MIR548W,MIR3186,MIR4315-2,MIR2909,MIR3185,MIR4314,MIR3184,MIR4315-1,MTRNR2L1,LOC100499466,LOC100499467,MIR3614,MIR3678,MIR3615,MIR3676,LOC100505576,LRRC3C,KRTAP16-1,LOC100505782,ARL17B,LOC100506388,SPAG5-AS1,LOC100506650,AA06,LOC100506713,SLFN12L,MIR497HG,LOC100506779,LOC100507218,LOC100507246,LOC100507351,LOC100507410,TEN1-CDK3,RAD51L3-RFFL,RNASEK-C17ORF49,C17orf61-PLSCR3,FAM18B2-CDRT4,SENP3-EIF4A1,P2RX5-TAX1BP3,MIR4523,MIR4731,MIR4728,MIR4726,MIR4739,MIR4734,MIR4729,MIR4737,MIR4736,MIR4724,MIR4733,MIR451B,MIR4522,MIR4738,MIR4740,MIR4524A,MIR4730,MIR4732,MIR3064,MIR4723,MIR4520A,MIR4521,MIR5047,MIR4727,MIR4725,MIR4520B,LOC100653515,RAB34, 2 TAOK1,MIR4523, 1 17q11.2 0.049308 -18 17 19152102 20252479 19469616 19712254 18860763 25270517 36 hsa-mir-1180,ALDH3A1,ALDH3A2,KCNJ12,MFAP4,MAPK7,MAP2K3,RNF112,TMEM11,ULK2,GRAP,AKAP10,EPN2,USP22,DHRS7B,B9D1,SLC47A1,SPECC1,SLC5A10,SLC47A2,CDRT15L2,C17orf103,FAM27L,FLJ36000,LGALS9B,CCDC144NL,C17orf51,CCDC144C,GRAPL,FAM83G,KRT16P3,SNORA59B,SNORA59A,KCNJ18,MIR1180,MTRNR2L1, 5 ALDH3A1,ALDH3A2,ULK2,SLC47A1,SLC47A2, 1 17p11.2 0.16968 -19 17 30368320 30974499 30548440 30773477 30363868 30947483 12 hsa-mir-632,MYO1D,PSMD11,SH3GL1P1,ZNF207,CDK5R1,RHOT1,C17orf75,LRRC37B,RHBDL3,ARGFXP2,MIR632, 7 hsa-mir-632,PSMD11,ZNF207,RHOT1,C17orf75,RHBDL3,MIR632, 1 17q11.2 0.062699 -20 19 38031904 39807224 39358366 39416030 39353061 39416409 6 NFKBIB,MRPS12,SIRT2,SARS2,RINL,LOC643669, 5 NFKBIB,SIRT2,SARS2,RINL,LOC643669, 1 19q13.2 0.00042306 diff --git a/core/src/test/resources/data_GISTIC_GENE_DELS.txt b/core/src/test/resources/data_GISTIC_GENE_DELS.txt deleted file mode 100755 index 3c2bcb7bbdc..00000000000 --- a/core/src/test/resources/data_GISTIC_GENE_DELS.txt +++ /dev/null @@ -1,21 +0,0 @@ -index chromosome region_start region_end peak_start peak_end enlarged_peak_start enlarged_peak_end n_genes_in_region genes_in_region n_genes_in_peak genes_in_peak n_genes_on_chip genes_on_chip top 3 amp cytoband q_value -1 2 141647612 142557853 140981064 142891872 139658541 143627097 1 LRP1B, 1 LRP1B, 0 2q22.1 2.49e-07 -2 2 231156196 236898967 233734185 234685527 219433597 242476062 245 hsa-mir-3133,hsa-mir-149,hsa-mir-4269,hsa-mir-562,hsa-mir-1471,hsa-mir-1244-1,hsa-mir-4268,hsa-mir-3132,hsa-mir-153-1,hsa-mir-3131,AGXT,ALPI,ALPP,ALPPL2,KIF1A,BCS1L,BOK,CHRND,CHRNG,COL4A3,COL4A4,COL6A3,CRYBA2,CYP27A1,DES,DTYMK,EPHA4,ACSL3,GBX2,GPC1,GPR35,HDLBP,AGFG1,DNAJB2,HTR2B,SP110,IHH,INHA,INPP5D,IRS1,KCNJ13,NCL,NDUFA10,SEPT2,NEU2,NPPC,PAX3,PDCD1,PDE6D,SERPINE2,PPP1R7,PSMD1,PTMA,PTPRN,SNORD20,SAG,CCL20,SLC4A3,SP100,SPP2,TUBA4A,WNT6,ZNF142,SCG2,CUL3,DGKD,STK16,PER2,CDK5R2,RQCD1,LRRFIP1,GPR55,TRIP12,ECEL1,EIF4E2,TTLL4,HDAC4,FARP2,FARSB,ABCB6,ARL4C,RAMP1,SPEG,NMUR1,STK25,COPS8,CAPN10,SP140,PASK,ATG4B,OBSL1,DNPEP,SH3BP4,KCNE4,NGEF,SNORD82,SNED1,GIGYF2,TRAF3IP1,CNPPD1,STK36,GMPPA,ANO7,PRLH,THAP4,ANKMY1,SCLY,ASB1,CAB39,PRKAG3,UGT1A10,UGT1A8,UGT1A7,UGT1A6,UGT1A5,UGT1A9,UGT1A4,UGT1A1,UGT1A3,FEV,PID1,ATG16L1,ANKZF1,USP40,HJURP,HES6,ACCN4,DOCK10,C2orf83,MFF,CXCR7,RNPEPL1,WDFY1,NYAP2,GAL3ST2,RAB17,RNF25,COPS7B,MRPL44,TRPM8,ATG9A,MLPH,FAM134A,GLB1L,CHPF,IQCA1,NHEJ1,FAM124B,TM4SF20,C2orf54,TUBA4B,ARMC9,EFHD1,SPHKAP,WNT10A,SLC19A3,ILKAP,ITM2C,RHBDD1,ING5,PLCD4,MGC16025,DNER,B3GNT7,SP140L,STK11IP,MOGAT1,AGAP1,TWIST2,DIS3L2,NEU4,AP1S3,SGPP2,SPATA3,TMEM198,ZFAND2B,FBXO36,MTERFD2,UBE2F,OTOS,MYEOV2,OR6B3,LOC150935,LOC151171,LOC151174,CCDC140,SLC23A3,LOC151300,SLC16A14,LOC151475,LINC00471,LOC151484,MSL3P1,WDR69,C2orf57,TIGD1,LOC200772,CCDC108,C2orf72,CXXC11,DUSP28,ESPNL,ECEL1P2,LOC348761,RBM44,AQP12A,KLHL30,RESP18,C2orf82,OR6B2,ASB18,FLJ43879,MIR149,MIR153-1,DNAJB3,MIR375,LOC643387,PRR21,LOC646736,PRSS56,AQP12B,SNORA75,SCARNA6,SCARNA5,D2HGDH,LOC728323,LOC100129175,PP14571,LOC100286922,MIR1471,MIR1244-1,BOK-AS1,MIR1244-3,MIR1244-2,MIR3131,MIR4268,MIR3132,MIR4269,UBE2F-SCLY,MIR4439,MIR4777,MIR2467,MIR4440,MIR4786,MIR4441, 21 INPP5D,NEU2,SAG,DGKD,NGEF,UGT1A10,UGT1A8,UGT1A7,UGT1A6,UGT1A5,UGT1A9,UGT1A4,UGT1A1,UGT1A3,ATG16L1,USP40,C2orf82,DNAJB3,SCARNA6,SCARNA5,LOC100286922, 0 2q37.1 0.014805 -3 2 212815115 212815297 212238982 213405276 484222 242476062 1516 hsa-mir-3133,hsa-mir-149,hsa-mir-4269,hsa-mir-562,hsa-mir-1471,hsa-mir-1244-1,hsa-mir-4268,hsa-mir-3132,hsa-mir-153-1,hsa-mir-3131,hsa-mir-26b,hsa-mir-548f-2,hsa-mir-1302-4,hsa-mir-2355,hsa-mir-3130-4,hsa-mir-3129,hsa-mir-1245,hsa-mir-561,hsa-mir-1258,hsa-mir-3128,hsa-mir-1246,hsa-mir-10b,hsa-mir-933,hsa-mir-128-1,hsa-mir-663b,hsa-mir-1302-3,hsa-mir-4267,hsa-mir-4266,hsa-mir-4265,hsa-mir-3127,hsa-mir-4264,hsa-mir-1285-2,hsa-mir-3126,hsa-mir-216b,hsa-mir-559,hsa-mir-558,hsa-mir-4263,hsa-mir-1301,hsa-mir-3125,hsa-mir-4262,hsa-mir-548s,hsa-mir-4261,AAMP,ACADL,ACP1,ACTG2,ACVR1,ACVR2A,ACYP2,ADCY3,ADD2,ADRA2B,AGXT,ALK,ALPI,ALPP,ALPPL2,BIN1,ANXA4,AOX1,APOB,RHOB,RND3,ATIC,ATP5G3,ATP6V1B1,KIF1A,AUP1,BARD1,BCS1L,BMPR2,BOK,ZFP36L2,BUB1,CACNB4,CAD,CALM2,CAPG,CASP8,CASP10,CCNT2,CD8A,CD8B,CD28,CENPA,CHN1,CHRNA1,CHRND,CHRNG,CLK1,CNGA3,COL3A1,COL4A3,COL4A4,COL5A2,COL6A3,COX5B,CPS1,CREB1,ATF2,CRYBA2,CRYGA,CRYGB,CRYGC,CRYGD,CTLA4,CTNNA2,CYP1B1,CYP27A1,DARS,DBI,DCTN1,DDX1,DES,DGUOK,LOC1720,DLX1,DLX2,DNAH6,DYNC1I2,DNMT3A,DOK1,DPP4,DTNB,DTYMK,DUSP2,E2F6,EEF1B2,EGR4,EMX1,EN1,EPAS1,EPHA4,ERBB4,ERCC3,FABP1,ACSL3,FAP,EFEMP1,FHL2,FKBP1B,FN1,FOSL2,FRZB,FSHR,FTH1P3,GAD1,GALNT3,GBX2,GCG,GCKR,MSTN,GFPT1,GGCX,GLI2,GLS,GPC1,GPD2,GPR1,GPR17,GPR35,GPR39,GRB14,MSH6,GTF3C2,GYPC,HADHA,HADHB,HDLBP,HK2,HNMT,TLX2,HOXD1,HOXD3,HOXD4,HOXD8,HOXD9,HOXD10,HOXD11,HOXD12,HOXD13,HPCAL1,AGFG1,DNAJB2,HSPD1,HSPE1,FOXN2,HTR2B,ID2,IDH1,SP110,IGFBP2,IGFBP5,IHH,IL1A,IL1B,IL1R1,IL1RN,CXCR1,CXCR2,CXCR2P1,INHA,INHBB,INPP1,INPP4A,INPP5D,ITGA6,IRS1,ITGA4,ITGAV,ITGB6,KCNF1,KCNJ3,KCNJ13,KCNK3,KCNS3,KHK,KIF3C,KIF5C,AFF3,LCT,LHCGR,LIMS1,LRP2,LTBP1,LY75,EPCAM,MXD1,MAL,MAP2,MAT2A,MATN3,MCM6,MDH1,MEIS1,MGAT5,MPV17,MYO1B,MSH2,MTIF2,MYCN,MYL1,MYO7B,NAB1,NCL,NEB,NDUFA10,NDUFB3,NDUFS1,SEPT2,NEU2,NEUROD1,NFE2L2,NPAS2,NPHP1,NPPC,NR4A2,ODC1,ORC2,ORC4,OTX1,REG3A,PAX3,PCBP1,PDCD1,PDE1A,PDE6D,PDK1,PEX13,VIT,SERPINE2,PIGF,PLCL1,PLEK,PLGLB2,PLGLB1,PMS1,POLR2D,POMC,POU3F3,PPM1B,PPM1G,PPP1CB,PPP1R7,PPP3R1,PRKCE,EIF2AK2,PROC,PSMD1,PTH2R,PTMA,PTPN4,PTPRN,RAB1A,RALB,RANBP2,RBMS1,REL,REG1A,REG1B,REG1P,SNORD20,RPE,RPL31,RPL37A,RPS7,RPS27A,RRM2,RTKN,SAG,SCN1A,SCN2A,SCN3A,SCN7A,SCN9A,SCTR,CCL20,SDC1,SRSF7,SFTPB,SIX3,SLC4A3,SLC1A4,SLC3A1,SLC8A1,SLC9A2,SLC11A1,SLC20A1,SNRPG,SOS1,SOX11,SP3,SP100,SPAST,SPP2,SPR,SPTBN1,SRD5A2,SSB,SSFA2,STAT1,STAT4,STRN,SULT1C2,ADAM17,TACR1,GCFC2,TFPI,TGFA,TIA1,TNFAIP6,TNP1,TNS1,TPO,TSN,TSSC1,TTN,TUBA4A,SUMO1,UCN,UGP2,VIL1,VRK2,VSNL1,WIPF1,WNT6,XDH,XPO1,XRCC5,ZAP70,ZNF2,ZNF142,SLC30A3,PXDN,ALMS1,MOGS,RNF103,PAX8,IL1R2,MALL,CXCR4,FZD5,SCG2,DYSF,FZD7,SDPR,NCK2,DUSP11,CUL3,KLF11,MAP4K3,PKP4,HAT1,DGKD,AGPS,PRKRA,STK16,SLC25A12,KLF7,ABCB11,NCOA1,VAMP8,MARCO,B3GALT1,ADAM23,SUCLG1,IL18RAP,IL1RL2,IL18R1,NRP2,CFLAR,ASAP2,PER2,ST3GAL5,SLC5A6,DDX18,EIF2B4,CDK5R2,KYNU,TAF1B,NAT8,NMI,RQCD1,COX7A2L,TMSB10,IL1RL1,LRRFIP1,STK17B,ITGB1BP1,GPR55,TRIP12,GTF3C3,PPIG,NRXN1,OTOF,CIAO1,TGFBRAP1,HS6ST1,CRIPT,ECEL1,MAP4K4,EIF2AK3,EIF4E2,ROCK2,CHST10,TP53I3,CIR1,MRPL33,BRE,PREPL,CYTIP,FEZ2,GCC2,TTLL4,SOCS5,EIF5B,GREB1,BZW1,USP34,LAPTM4A,HDAC4,RNF144A,SNX17,SERTAD2,MRPL19,ZEB2,FARP2,TLK1,SUPT7L,CD302,ARHGAP25,TANK,BCL2L11,FARSB,ABCB6,ACTR3,ACTR2,ARPC2,PREB,ACTR1B,ARL4C,LRPPRC,PDIA6,ABI2,CEBPZ,DHRS9,TXNDC9,MPHOSPH10,CALCRL,PSMD14,STAM2,RAMP1,SPEG,LANCL1,NMUR1,SMYD5,KBTBD10,MYCNOS,C1D,MERTK,UBE2E3,STK25,SEMA4F,CCT7,CCT4,GNLY,CDC42EP3,STAMBP,TGOLN2,MTX2,CGREF1,B3GNT2,USP39,TBR1,SIX2,MAP3K2,NCKAP1,VAMP5,MTHFD2,ARID5A,PROKR1,RAB10,EDAR,COPS8,GPR75,YWHAQ,IMMT,SNRNP27,GTF2A1L,STON1,RAPGEF4,EMILIN1,CAPN10,TBC1D8,RABL2A,GALNT5,NXPH2,GPR45,SP140,MGAT4A,GPN1,IKZF2,COBLL1,AAK1,FASTKD2,MAPRE3,PLA2R1,RAB3GAP1,RPIA,SLC4A1AP,EFR3B,SNRNP200,MYT1L,WDR43,LPIN1,CEP68,PASK,UBXN4,ATG4B,PSME4,EXOC6B,EHBP1,SATB2,CLASP1,OBSL1,PUM2,NCAPH,RHOQ,SF3B1,HAAO,TMEM131,R3HDM1,DNPEP,PSD4,WBP1,NTSR2,TMEFF2,SH3BP4,PRKD3,KCNE4,RASGRP3,NGEF,QPCT,GCA,VAX2,SNORD82,MOB4,POLR1A,CNRIP1,FAM98A,PNKD,UNC50,SNED1,GORASP2,SPATS2L,RAB11FIP5,GIGYF2,EPC2,TRAF3IP1,ABCA12,IFT172,ARL5A,HIBCH,PTPN18,CNNM4,CNNM3,IL36RN,SH3YL1,SNORD53,SNORD51,CNPPD1,STK36,IL36B,IL37,IL36A,SULT1C4,NFU1,ERLEC1,MMADHC,BMP10,ZNF638,STK39,HTRA2,EML4,TRIB2,CPS1-IT1,METTL5,LGALSL,OLA1,C2orf27A,GRHL1,TFCP2L1,ICOS,GMPPA,NRBP1,BAZ2B,SLC40A1,KCNIP3,EHD3,SMARCAL1,CD207,ITSN2,ANO7,ARHGEF4,PDE11A,TPRKB,FAHD2A,PRLH,WDPCP,MEMO1,THAP4,TRAPPC12,ASB3,INSIG2,CRIM1,ANKRD39,FAM178B,RNF181,MRPL30,DNAJC27,ANKMY1,KRCC1,MRPL35,C2orf28,PCYOX1,GULP1,REV1,NAT8B,SCLY,VPS54,NBAS,LIPT1,NOP58,DYNC2LI1,SF3B14,YPEL5,CHMP3,FKBP7,ASB1,CPSF3,CAB39,ZAK,BCL11A,LRP1B,PRKAG3,PPIL3,SNTG2,DNAJC10,ATAD2B,ETAA1,HEATR5B,CCDC93,ASNSD1,UGT1A10,UGT1A8,UGT1A7,UGT1A6,UGT1A5,UGT1A9,UGT1A4,UGT1A1,UGT1A3,FEV,AFTPH,MFSD6,TMEM214,RETSAT,INO80D,SEMA4C,C2orf18,C2orf42,TRMT61B,PID1,PTCD3,PLEKHB2,ATG16L1,FANCL,SRBD1,FIGN,ANKZF1,RIF1,USP40,MOB1A,STEAP3,ASXL2,ADI1,THNSL2,ACOXL,WDR33,HJURP,STRADB,C2orf56,HES6,ACCN4,C2orf29,NAGK,DOCK10,TTC27,SMPD4,TMEM127,PRPF40A,SLC30A6,IWS1,LIMS2,KANSL3,MREG,CCDC88A,WDR12,MBD5,KDM3A,ALLC,PECR,ARHGAP15,ZC3H15,CFC1,DNAH7,GKN1,IL36G,RPRM,CYP26B1,POLE4,KCNK12,UGGT1,KCMF1,DPYSL5,PNO1,STARD7,C2orf83,MFF,RPL23AP32,CXCR7,RNPEPL1,RTN4,TRIM54,PELI1,SLC39A10,TTC7A,SMEK2,SLC4A10,CYP20A1,SPC25,BIRC6,ERMN,KIDINS220,MTA3,HECW2,WDR35,MARCH4,WDFY1,NYAP2,DPP10,RDH14,EPB41L5,ALS2,ZDBF2,USP37,CWC22,ANKRD36B,G6PC2,SLC4A5,CTDSP1,NLRC4,MPP4,SLC5A7,NIF3L1,AGBL5,C2orf43,THADA,PCGEM1,RBKS,GAL3ST2,TMBIM1,IFIH1,OSGEPL1,ATL2,ABCG5,ABCG8,RAB17,RNF25,HS1BP3,GMCL1,TTC31,ANAPC1,COPS7B,RMND5A,FNDC4,MARCH7,OBFC2A,PAPOLG,MRPS9,MRPS5,REEP1,RAPH1,CDK15,TMEM237,NBEAL1,CFLAR-AS1,MRPL44,SOWAHC,PLEKHA3,TRAK2,BOLL,COLEC11,PDCL3,TRPM8,ATG9A,C2orf49,MLPH,TMEM185B,FAM134A,CENPO,OR7E91P,GLB1L,C2orf47,SPAG16,CHPF,SAP130,GALNT14,SCRN3,CCDC121,FASTKD1,SMC6,GTDC1,CLIP4,IQCA1,ALS2CR8,TTC21B,CAMKMT,METTL8,GEMIN6,NHEJ1,FAM124B,TM4SF20,CYBRD1,C2orf54,NOL10,ANKRD53,CSRNP3,PGAP1,LRRTM4,DCAF17,TUBA4B,MZT2B,YSK4,UXS1,FBXO11,ARMC9,COQ10B,SLC35F5,EFHD1,C2orf44,SPHKAP,WNT10A,SLC19A3,TSGA10,THSD7B,THUMPD2,TMEM177,KIAA1715,ILKAP,FAM49A,LMAN2L,LBH,TMEM163,ITM2C,TCF7L1,INO80B,AMMECR1L,CDCA7,WDR54,ZRANB3,RAB6C,WDR75,FAM161A,FAM176A,ANTXR1,POLR1B,ELMOD3,RGPD5,C2orf16,RHBDD1,CHCHD5,YIPF4,PRADC1,C2orf88,ING5,CCDC115,MKI67IP,C2orf40,ZNF512,ZC3H8,KIAA1841,ST6GAL2,IL1F10,DPY30,MCEE,LOXL3,ABHD1,PCGF1,DDX11L2,MFSD9,PLCD4,SFT2D3,CCDC142,ZNF514,FAM136A,TMEM87B,ATOH8,LOC84931,MGC16025,TANC1,EPT1,LBX2,PNPT1,KCNH7,FER1L5,MCFD2,ATP6V1E2,LOC90499,CCDC74A,LOC90784,DHX57,LOC91149,SESTD1,CCDC74B,PKDCC,ANKRD44,RSAD2,ZNF804A,TTC30A,DAPL1,CAPN13,TMEM169,DNER,CCDC164,IMP4,HNRPLL,MARS2,B3GNT7,NT5C1B,NEURL3,SP140L,SFXN5,ORMDL1,LIMS3,LINC00152,TUBA3E,CCDC104,TEX261,TUBA3D,STK11IP,FMNL2,CCDC85A,GALNT13,KLHL29,OSBPL6,NOSTRIN,DIRC1,WDR92,MOGAT1,LYPD1,MRPL53,AGAP1,TWIST2,PARD3B,RPL23AP7,PPP1R21,C2orf89,TMEM150A,NUP35,XIRP2,TYW5,NMS,LYG1,MITD1,DIS3L2,CMPK2,MBOAT2,CNTNAP5,TMEM18,FBLN7,NEU4,RBM45,C2orf73,TRIM43,BBS5,C2orf77,ACMSD,ICA1L,FAM168B,CIB4,REG3G,RFTN2,C2orf63,PLEKHH2,AP1S3,C2orf76,SGPP2,ACVR1C,OSR1,TTC32,UBR3,KCTD18,ALS2CR12,ZNF513,SPATA3,LYPD6,LYPD6B,GALM,TMEM198,ZFAND2B,TMEM178,CPO,MDH1B,C2orf50,PQLC3,TMEM182,AHSA2,FBXO36,MTERFD2,CCDC148,C2orf65,MYO3B,TMEM37,UBE2F,DUSP19,TTL,CKAP2L,CBWD2,TEKT4,LOC150527,FLJ32063,LOC150568,SMYD1,C2orf15,LOC150622,OTOS,MYEOV2,OR6B3,COMMD1,PROM2,ANKAR,FBXO41,TTC30B,GPAT2,ITPRIPL1,LOC150776,WTH3DI,FAM117B,TCF23,LOC150935,FAM59B,PUS10,PKI55,LINC00309,LOC151009,SEPT10,C2orf67,PLB1,ZSWIM2,ZNF385B,LOC151171,LOC151174,ARL6IP6,METTL21A,CCNYL1,KLHL23,SULT1C2P1,PPP1R1C,SGOL2,ALS2CR11,SLC38A11,CCDC140,SLC23A3,LOC151300,GPBAR1,FAHD2B,MYADML,FAM84A,FAM82A1,GDF7,SLC16A14,LOC151475,LINC00471,LOC151484,MSL3P1,ASPRV1,WDSUB1,UPP2,LOC151534,GPR155,WDR69,LONRF2,CCDC138,GPR113,C2orf57,OXER1,FAM179A,FAM171B,C1QL2,UBXN2A,CLEC4F,DQX1,KCNG3,CYS1,FOXD4L1,PCDP1,VWA3B,CREG2,ALMS1P,TET3,GKN2,C2orf51,ANKRD23,APLF,PIKFYVE,KRTCAP3,LOC200726,TMEM17,SPRED2,TIGD1,LOC200772,FAM123C,LINC00116,C2orf69,HNRNPA3,SPDYA,ATP6V1C2,RNASEH1,LCLAT1,CCDC75,CERS6,METAP1D,LOC254128,LYG2,CCDC108,C2orf72,SH2D6,LOC284950,CCDC150,RNF149,LOC284998,LOC285000,FAM150B,CCDC141,LOC285033,LINC00486,C2orf61,LOC285074,LOC285084,CXXC11,LOC285103,DNAJC5G,IAH1,FLJ33534,CYP1B1-AS1,FAM126B,UNC80,RUFY4,PLGLA,RGPD4,DUSP28,STON1-GTF2A1L,SPOPL,MLK7-AS1,CYP27C1,ESPNL,C2orf70,C2orf53,LOC339788,LINC00299,LOC339803,C2orf74,LOC339807,LOC339822,MSGN1,C2orf55,FIGLA,NOTO,NCKAP5,FOXI3,EVX2,CDKL4,PRORSD1P,AOX2P,SH3RF3,GPR148,ECEL1P2,LRRTM1,GEN1,C2orf48,FONG,LOC348761,PFN4,LOC375190,LOC375196,ANKRD36,WASH2P,RBM43,LOC375295,CERKL,C2orf62,RBM44,AQP12A,ZC3H6,KLHL30,LOC386597,MFSD2B,C2orf71,LOC388942,LOC388946,LOC388948,TSPYL6,C2orf78,BOLA3,C2orf81,FUNDC2P2,C2orf68,SLC9A4,LOC389023,LOC389033,LOC389043,SP5,PLEKHM3,C2orf80,RESP18,C2orf82,OR6B2,PTRHD1,SULT6B1,DYTN,LOC400940,LINC00487,FLJ12334,LOC400950,UNQ6975,EML6,FLJ30838,FLJ16341,LOC400958,PCBP1-AS1,PAIP2B,RGPD1,FLJ42351,LOC401010,DKFZp686O1327,LOC401022,FSIP2,C2orf66,ASB18,FLJ43879,VWC2L,MIR10B,MIR128-1,MIR149,MIR153-1,MIR216A,MIR217,MIR26B,C2orf27B,DNAJB3,ASTL,CAPN14,ACTR3BP2,LOC440894,LOC440895,LOC440900,LOC440905,LOC440910,POTEKP,LOC440925,LOC442028,SULT1C3,POTEE,COA5,PHOSPHO2,CHAC2,MIR375,DFNB59,LOC541471,LOC554201,ANKRD30BL,FBXO48,SNORA41,FAM110C,LOC643387,PRR21,LOC644838,GGT8P,ANKRD36BP2,LOC645949,LOC646324,LOC646736,LOC646743,PRSS56,LOC647012,C2orf84,TRIM43B,CFC1B,AQP12B,RGPD3,MZT2A,SNORA75,LOC654342,FAM138B,LOC654433,SCARNA6,SCARNA5,SNORD11,SNORD70,SNORD89,SNORD92,SNORD94,MIR558,MIR559,MIR561,RGPD8,LOC727982,D2HGDH,LOC728323,POTEF,LOC728537,LOC728730,PABPC1P2,LOC728819,LOC729121,ANKRD20A8P,LOC729234,RAD51AP2,RGPD6,DIRC3,DNAJC27-AS1,RGPD2,MORN2,LOC730811,RFX8,SNORD11B,SNORA36C,SNORA70B,MIR216B,MIR933,LOC100128590,OST4,LOC100129175,LOC100129726,LOC100129961,PP14571,LOC100130451,LOC100130452,LOC100130691,TMEM194B,LOC100131320,SP9,LOC100132215,CYP4F30P,LOC100133985,LOC100134259,LOC100144595,RNU4ATAC,DBIL5P2,SNAR-H,LOC100189589,LOC100216479,ARHGEF33,LOC100271832,LIMS3-LOC440895,LOC100286922,LOC100286979,LOC100287010,LOC100287216,LOC100288570,LIMS3L,LOC100288911,MIR1471,MIR1246,MIR548N,MIR1258,MIR1245A,MIR1301,MIR1244-1,LOC100302650,GPR75-ASB3,SNORA80B,ZEB2-AS1,MIR548F2,MIR663B,LOC100329109,SNORA70F,BOK-AS1,MIR3128,MIR4265,MIR1244-3,MIR1244-2,MIR4264,MIR3129,MIR3127,MIR4261,MIR3131,MIR4268,MIR4263,MIR3125,MIR3130-1,MIR4267,MIR4262,MIR3130-2,MIR4266,MIR3126,MIR2355,MIR3132,MIR4269,LOC100499194,MIR3606,MIR3682,MIR3679,LOC100505624,LOC100505695,LOC100505716,LOC100505876,LOC100505964,LOC100506054,LOC100506123,LOC100506124,LOC100506134,LOC100506274,LOC100506421,LOC100506474,LOC100506783,LOC100506866,LOC100507140,BOLA3-AS1,LOC100507334,LOC100507443,LOC100507600,LY75-CD302,RNF103-CHMP3,NT5C1B-RDH14,PHOSPHO2-KLHL23,HSPE1-MOB4,INO80B-WBP1,UBE2F-SCLY,MIR4436B1,MIR4772,MIR4779,MIR4783,MIR4439,MIR4782,MIR4437,MIR4765,MIR4776-1,MIR4757,MIR4777,MIR1245B,MIR4435-2,MIR4426,MIR4774,MIR2467,MIR4775,MIR4785,MIR4784,MIR4773-1,MIR4444-1,MIR4440,MIR4436A,MIR4786,MIR4773-2,MIR4434,MIR4780,MIR4778,MIR4429,MIR4776-2,MIR4432,MIR548AD,MIR4441,MIR4435-1,LOC100630918,LOC100861402, 3 hsa-mir-548f-2,ERBB4,MIR548F2, 0 2q34 0.077883 -4 3 45988061 51954727 48599802 48659310 39847189 77701041 359 hsa-mir-4273,hsa-mir-1324,hsa-mir-1284,hsa-mir-3136,hsa-mir-4272,hsa-mir-135a-1,hsa-mir-566,hsa-mir-4271,hsa-mir-191,hsa-mir-711,hsa-mir-2115,hsa-mir-1226,hsa-mir-564,hsa-mir-138-1,ACY1,ALAS1,AMT,APEH,ARF4,RHOA,C3orf51,CACNA1D,SLC25A20,CAMP,CCK,ENTPD3,CDC25A,CISH,CCR1,CCR3,CCR5,CCBP2,COL7A1,CTNNB1,CYP8B1,DAG1,DNASE1L3,DOCK3,DUSP7,CELSR3,FHIT,FLNB,GNAI2,GNAT1,XCR1,GPR27,GPX1,GRM2,HYAL1,IMPDH2,ITIH1,ITIH3,ITIH4,LAMB2,LTF,MAP4,MITF,MST1,MST1R,MYL3,NKTR,CNTN3,PDHB,PFKFB4,PLXNB1,PRKAR2A,PRKCD,PTH1R,PTPRG,QARS,ROBO2,RPL29,ATXN7,SEMA3F,SMARCC1,NEK4,TCTA,TDGF1,TGM4,TKT,TMF1,CLEC3B,TNNC1,UBA7,USP4,UQCRC1,VIPR1,WNT5A,ZNF35,IFRD2,MAPKAPK3,SEMA3B,SLMAP,MANF,ACOX2,BAP1,HYAL3,CADPS,HYAL2,SUCLG2,HESX1,BSN,LIMD1,CCRL2,UBA3,RPL14,SEC22C,RRP9,MAGI1,CACNA2D2,VPRBP,IP6K1,PSMD6,PARP3,ZNF197,RBM6,RBM5,NME6,EIF1B,TRAIP,ARIH2,ARL6IP5,NPRL2,CXCR6,CSPG5,CCR9,USP19,SLC38A3,CYB561D2,TMEM115,RPP14,FAM107A,WDR6,RASSF1,NISCH,TREX1,TUSC2,TWF2,TRAK1,DHX30,SACM1L,SCAP,LAMB2P1,EXOSC7,PDZRN3,RAD54L2,FRMD4B,STAB1,NBEAL2,FAM208A,KLHL18,LARS2,RYBP,NAT6,ABHD14A,POC1A,TMEM158,NDUFAF3,MYRIP,PTPN23,DNAH1,HIGD1A,LRIG1,ERC2,APPL1,GNL3,FOXP1,SPCS1,SETD2,PRSS50,RBM15B,GMPPB,ARHGEF3,ABHD5,C3orf18,SS18L2,SHISA5,ZDHHC3,ZMYND10,TEX264,CCDC72,ZNF589,HEMK1,IP6K2,SFMBT1,NCKIPSD,PHF7,TLR9,LZTFL1,P4HTM,SLC6A20,IL17RD,C3orf75,SNRK,QRICH1,PXK,ULK4,FEZF2,EBLN2,ANO10,DALRD3,SHQ1,PBRM1,CHDH,IL17RB,CACNA2D3,DCP1A,GLT8D1,ZNF167,LMOD3,SEMA3G,KIF15,ADAMTS9,PCBP4,ABHD6,LRTM1,C3orf14,KIAA1143,HHATL,SELK,PROK2,RNF123,KIF9,CDCP1,CCDC71,NT5DC2,SLC26A6,CAMKV,LRRC2,FYCO1,CCDC51,THOC7,WDR82,RTP3,ID2B,ATRIP,NICN1,MON1A,KBTBD8,ABHD14B,C3orf39,UCN2,ZNF502,RFT1,ZBTB47,ACTR8,SLC25A26,ZNF501,GPR62,FAM3D,LYZL4,KBTBD5,TMEM42,IQCF1,GLYCTK,PPM1M,C3orf49,SNTN,SYNPR,C3orf45,ASB14,FAM19A4,CCDC12,PPP4R2,CCDC13,PRICKLE2,C3orf67,KCTD6,KLHDC8B,LOC201617,DNAH12,PDE12,FAM116A,ZNF620,ALS2CL,TMIE,C3orf64,FBXW12,ENTPD3-AS1,ZNF619,ZNF621,CCDC66,C3orf23,ZNF660,FLJ39534,LOC285401,EIF4E3,CCDC36,PRSS42,ZNF445,SPATA12,C3orf77,C3orf62,TMEM110,PRSS45,AMIGO3,ZNF662,CDHR4,FAM212A,IQCF2,IQCF5,MUSTN1,IQCF3,LOC401074,MIRLET7G,MIR135A1,MIR138-1,MIR191,FAM19A1,FLJ33065,TMEM89,IQCF6,C3orf78,MIR425,LOC644714,SPINK8,C3orf71,LOC646498,FLJ20518,SNORD19,FAM86DP,SNORD69,MIR548A2,MIR564,GXYLT2,FAM198A,CCR2,ESRG,SNORD19B,C3orf74,NRADDP,ZNF717,LOC100132146,BSN-AS2,PRSS46,LOC100287879,FRG2C,MIR1284,MIR1324,MIR1226,MIR711,MIR3136,MIR4272,MIR4271,MIR4273,MIR3938,KRBOX1,IQCF4,LOC100506994,LOC100507062,ADAMTS9-AS2,ABHD14A-ACY1,TMEM110-MUSTN1,MIR4793,MIR4787,MIR4444-1,MIR4443,LOC100652759,LUST, 6 hsa-mir-711,COL7A1,UQCRC1,UCN2,TMEM89,MIR711, 0 3p21.31 0.077375 -5 3 87295271 87295696 87247758 87326221 2212571 197538677 1276 hsa-mir-922,hsa-mir-570,hsa-mir-3137,hsa-mir-944,hsa-mir-28,hsa-mir-1248,hsa-mir-1224,hsa-mir-569,hsa-mir-551b,hsa-mir-720,hsa-mir-1263,hsa-mir-16-2,hsa-mir-1280,hsa-mir-548i-1,hsa-mir-544b,hsa-mir-198,hsa-mir-568,hsa-mir-567,hsa-mir-4273,hsa-mir-1324,hsa-mir-1284,hsa-mir-3136,hsa-mir-4272,hsa-mir-135a-1,hsa-mir-566,hsa-mir-4271,hsa-mir-191,hsa-mir-711,hsa-mir-2115,hsa-mir-1226,hsa-mir-564,hsa-mir-138-1,hsa-mir-26a-1,hsa-mir-128-2,hsa-mir-466,hsa-mir-3135,hsa-mir-563,hsa-mir-3134,hsa-mir-4270,hsa-mir-885,AADAC,ACAA1,ACPP,ACTL6A,ACVR2B,ACY1,ADCY5,ADPRH,AGTR1,AHSG,ALAS1,ALCAM,AMT,APEH,APOD,ARF4,RHOA,ATP1B3,ATP2B2,ATP6V1A,ATR,BCHE,BCL6,BDH1,FOXL2,BTD,C3orf51,CACNA1D,SLC25A20,CAMP,CASR,CAV3,CBLB,CCK,CD80,CD86,ENTPD3,CD47,CDC25A,CISH,AP2M1,CLCN2,CCR1,CCR3,CCR4,CCR5,CCR8,CCBP2,COL7A1,COL8A1,CP,CPA3,CPB1,CPN2,CPOX,CRYGS,CSTA,CTNNB1,CX3CR1,CYP8B1,DAG1,DGKG,DAZL,DLG1,DNASE1L3,DOCK3,DRD3,DUSP7,DVL3,ECT2,CELSR3,EHHADH,EIF4A2,EIF4G1,EPHA3,EPHB1,EPHB3,ETV5,MECOM,FANCD2,FBLN2,FGF12,FHIT,FLNB,GAP43,GATA2,GBE1,GHSR,GLB1,GNAI2,GNAT1,GOLGA4,GOLGB1,GP5,GP9,XCR1,GPR15,GPR27,GPX1,GRM2,GRM7,GSK3B,GTF2E1,GYG1,HCLS1,HGD,HRH1,HRG,HES1,HTR1F,HYAL1,IL1RAP,IL5RA,IL12A,IMPDH2,IRAK2,ITGA9,ITGB5,ITIH1,ITIH3,ITIH4,ITPR1,KNG1,KPNA1,KPNA4,LAMB2,RPSA,LPP,LSAMP,LTF,TM4SF1,MAP4,MBNL1,MCM2,MFI2,MITF,MLF1,MLH1,MME,MOBP,CD200,MST1,MST1R,MUC4,MYD88,MYL3,MYLK,NCK1,NDUFB4,NDUFB5,NKTR,OGG1,OPA1,CLDN11,OXTR,P2RY1,PAK2,CNTN3,PCCB,PCYT1A,PDHB,PFKFB4,PFN2,SERPINI1,SERPINI2,PIK3CA,PIK3CB,PLCD1,PLD1,PLOD2,PLS1,PLSCR1,PLXNA1,PLXNB1,POLR2H,POU1F1,PPARG,PPP1R2,PPP2R3A,PRKAR2A,PRKCD,PRKCI,PROS1,MASP1,PSMD2,PTH1R,PTPRG,PTX3,QARS,RAB5A,RAF1,RAP2B,RARB,RARRES1,RASA2,RBP1,RBP2,RFC4,RHO,SNORA63,SNORA62,ROBO1,ROBO2,RPL15,RPL24,RPL29,RPL32,RPL35A,RPN1,RYK,SATB1,ATXN7,SCN5A,SCN10A,SEC13,SEMA3F,SETMAR,TRA2B,SHOX2,SI,SIAH2,ST6GAL1,SKIL,SLC2A2,SLC6A1,SLC6A6,SLC6A11,SLC15A2,SLCO2A1,HLTF,SMARCC1,SOX2,SSR3,SST,STAC,NEK4,SYN2,TCTA,TDGF1,TERC,TF,TFDP2,TFRC,TGM4,TGFBR2,THPO,THRB,TIMP4,TKT,SEC62,TM4SF4,TMF1,CLEC3B,TNNC1,TOP2B,NR2C2,TRH,TRPC1,UBA7,UBE2E1,UBE2E2,UBP1,UPK1B,UMPS,USP4,UQCRC1,CLRN1,VHL,VIPR1,WNT5A,WNT7A,XPC,ZIC1,CNBP,ZNF35,ZNF80,ZNF148,BRPF1,IFRD2,MAPKAPK3,SEMA3B,SLMAP,MANF,RAB7A,KCNAB1,FXR1,COLQ,ACOX2,BAP1,EOMES,HYAL3,SOX14,BFSP2,CAMK1,CGGBP1,BHLHE40,RUVBL1,CADPS,TP63,CHRD,HYAL2,B4GALT4,B3GALNT1,SNX4,TNFSF10,SUCLG2,HESX1,GMPS,KAT2B,NR1I2,EIF2B5,BSN,MBD4,H1FX,USP13,LIMD1,KALRN,CCRL2,UBA3,RPL14,CLDN1,SEC22C,RRP9,MAP3K13,SLC33A1,LRRFIP2,MAGI1,CACNA2D2,COPB2,ADIPOQ,SLC22A14,SLC22A13,CHST2,SH3BP5,SLC4A7,STXBP5L,RNF7,GUCA1C,IQCB1,DZIP3,VGLL4,EDEM1,KIAA0226,ECE2,VPRBP,TBC1D5,TATDN2,IP6K1,TSC22D2,EPM2AIP1,PSMD6,TOMM70A,TRANK1,SRGAP3,IQSEC1,P2RY14,DLEC1,EXOG,XYLB,OXSR1,NR1D2,PDCD6IP,PARP3,SMC4,ABCC5,COX17,ARPC4,ZNF197,RBM6,RBM5,TNK2,ALG3,NME6,CTDSPL,CD96,KCNMB2,STAG1,EIF1B,TRAIP,TFG,ST3GAL6,ARIH2,TADA3,CRTAP,ATG7,ARL6IP5,NPRL2,IGF2BP2,CXCR6,CSPG5,CLDN16,POLQ,CHL1,ARPP21,CCR9,ALDH1L1,USP19,PDIA5,SLC38A3,CYB561D2,TMEM115,TOPBP1,RPP14,HHLA2,FSTL1,FAM107A,WDR6,RASSF1,NISCH,MRPL3,PDCD10,FILIP1L,TREX1,SCN11A,TUSC2,RNF13,MGLL,TWF2,MRAS,COPG,SLITRK3,NLGN1,TRAK1,DHX30,SACM1L,NCBP2,SCAP,LAMB2P1,MYH15,PLCH1,EXOSC7,TMCC1,PDZRN3,TNIK,CAND2,MCF2L2,CLASP2,PLXND1,RAD54L2,FRMD4B,STAB1,GPD1L,RFTN1,ATP11B,NBEAL2,NUP210,PLCL2,ANKRD28,FAM208A,KLHL18,DNAJC13,U2SURP,VPS8,LARS2,RYBP,C3orf27,CAPN7,ACAP2,MKRN2,NAT6,FBXL2,ANAPC13,ARMC8,ABHD14A,C3orf17,POC1A,ABI3BP,CNOT10,TMEM158,NDUFAF3,THUMPD3,MYRIP,PTPN23,WWTR1,PVRL3,TIPARP,CHMP2B,DNAH1,HIGD1A,LRIG1,SUSD5,UBXN7,ERC2,APPL1,HACL1,ARHGEF26,ZBTB20,TTLL3,OR5K1,OR5H1,GNL3,FAM162A,PCOLCE2,SEC22A,GPR160,FETUB,NPHP3,ATP2C1,LAMP3,FOXP1,KCNMB3,ZBTB11,MORC1,SERP1,CNTN6,LSM3,RBMS3,GOLIM4,NKIRAS1,SPCS1,ACAD9,ASTE1,KLF15,SETD2,GTPBP8,TAGLN3,PRSS50,RBM15B,GPR171,GMPPB,SEC61A1,LINC00312,SCHIP1,LMCD1,PIK3R4,PODXL2,ARHGEF3,TRAT1,VILL,IMPG2,C3orf32,NMD3,TRNT1,ABHD5,COMMD2,DYNC1LI1,A4GNT,C3orf18,DBR1,CRBN,SS18L2,ZNF639,CLDN18,C3orf19,SHISA5,TIMMDC1,ZDHHC3,RSRC1,ZMYND10,PLA1A,TEX264,CCDC72,ZNF589,HEMK1,AMOTL2,IP6K2,SFMBT1,NCKIPSD,PHF7,CCRL1,PEX5L,RAB6B,SELT,FBXO40,DNAJB11,GHRL,P2RY13,IL20RB,GPR87,TLR9,DCUN1D1,SEMA5B,XRN1,WDR5B,LZTFL1,PARP14,P4HTM,SLC6A20,IL17RD,GRAMD1C,ROPN1,KLHL24,SIDT1,C3orf75,SNRK,QRICH1,PXK,CMTM6,RG9MTD1,SLC41A3,PIGX,SLC25A38,ULK4,OXSM,SLC35A5,TMEM45A,FEZF2,IFT57,EBLN2,ANO10,DALRD3,SHQ1,MSL2,TBCCD1,FAIM,SLC25A36,PBRM1,ARL8B,SETD5,DPPA4,LEPREL1,TMEM39A,ZNF654,TMEM40,ABCF3,LSG1,ABHD10,CHDH,PARL,IL17RB,CDV3,MFN1,YEATS2,IFT122,NGLY1,TBC1D23,WDR52,CACNA2D3,DCP1A,GLT8D1,TMEM111,EAF2,BRK1,ZNF167,MYNN,LMOD3,EIF5A2,CLDND1,MUC13,SUCNR1,RAD18,SEMA3G,MCCC1,LXN,C3orf37,MRPS22,NIT2,POGLUT1,BBX,KIF15,ADAMTS9,CCNL1,PLSCR2,PCBP4,PLSCR4,PCNP,HRASLS,MRPL47,SENP7,ABHD6,LRTM1,C3orf14,KIAA1143,ISY1,HHATL,HEG1,KIAA1257,ARHGAP31,NCEH1,IFT80,KIAA1407,WDR48,LRRN1,KIAA1524,SLC7A14,SRPRB,SELK,SENP2,GNB4,BPESC1,PROK2,EEFSEC,RNF123,NSUN3,CIDEC,CLSTN2,POPDC2,RTP4,MAGEF1,ZFYVE20,KIF9,NFKBIZ,AZI2,ZMAT3,MTMR14,ATG3,MRPS25,CSRNP1,GORASP1,MFSD1,CCDC14,FNDC3B,P2RY12,CDCP1,CCDC71,NT5DC2,SLC26A6,TMEM108,CRELD1,CAMKV,TMEM43,OR5H6,OR5H2,ZXDC,ZBED2,LRRC2,FYCO1,ATP13A3,CEP97,HSPBAP1,C3orf52,VEPH1,QTRTD1,CCDC51,TBL1XR1,ZBBX,ZNF385D,LRRC31,CCDC48,NEK11,UBA5,HDAC11,MAP6D1,PHC3,C3orf36,ARL14,THOC7,NAA50,PIGZ,CEP63,CEP70,ABTB1,WDR82,TMEM22,TSEN2,GRIP2,OR5AC2,RTP3,PARP9,ESYT3,SPATA16,EIF2A,B3GNT5,C3orf20,ID2B,ARL6,ZIC4,ATRIP,ACAD11,IQCG,ATP13A4,FYTTD1,NICN1,CHCHD6,MON1A,C3orf26,HPS3,ARPM1,JAGN1,KBTBD8,SLC12A8,GHRLOS2,RETNLB,CCDC54,MGC2889,IL17RC,ABHD14B,LRCH3,MINA,GPR128,C3orf39,DIRC2,CEP19,EAF1,DCLK3,GFM1,LMLN,KLHL6,C3orf15,PHLDB2,VWA5B2,UCN2,LOC90246,C3orf25,TMEM41A,ZNF502,BOC,FAM55C,RFT1,OXNAD1,SPSB4,ACPL2,ZBTB47,TMEM44,EGFEM1P,ACTR8,CAMK2N2,CMTM7,TXNRD3,OSBPL10,OSBPL11,SLC25A26,ZNF501,C3orf24,LRRC58,LRRC3B,TM4SF19,TM4SF18,RPL39L,MED12L,CLRN1-AS1,GALNTL2,GPR62,CPNE4,CCDC58,KCNH8,DNAJC19,OTOL1,FAM3D,ZPLD1,LYZL4,KBTBD5,TRIM71,FAM131A,CD200R1,CHCHD4,ZDHHC19,DCBLD2,LRRC15,FAM43A,TPRA1,TMEM42,UROC1,FAM194A,NUDT16,COL6A6,GRK7,FAM172BP,TMEM207,METTL6,TAMM41,IL17RE,RTP1,IQCF1,GLYCTK,PPM1M,C3orf49,SNTN,SYNPR,C3orf45,RPL32P3,H1FOO,PISRT1,ASB14,TTC14,DTX3L,FAM19A4,SGOL1,PP2D1,EFHB,LOC151658,PPM1L,WDR49,LRRC34,CPNE9,DPPA2,CCDC80,BTLA,CCDC12,MB21D2,PPP4R2,XXYLT1,ROPN1B,LOC152024,C3orf22,C3orf55,ZCWPW2,CMC1,NEK10,C3orf79,CCDC50,PYDC2,SPICE1,CMTM8,NUDT16P1,CCDC13,LOC152217,LOC152225,FGD5,CIDECP,CNTN4,IGSF11,C3orf30,PARP15,SPTSSB,DNAJB8,GPR156,XIRP1,RNF168,CHST13,PRICKLE2,KBTBD12,DHX36,HTR3C,DZIP1L,TTC21A,ALG1L,C3orf67,KCTD6,LIPH,ARL13B,DHFRL1,HTR3D,RPL22L1,OSTalpha,FBXO45,KLHDC8B,MUC20,GABRR3,PTPLB,STT3B,LOC201617,DNAH12,PDE12,FAM116A,TIGIT,LOC201651,C3orf58,SENP5,KIAA2018,LOC220729,ZBTB38,CADM2,LOC253573,ZNF620,NAALADL2,ZDHHC23,LOC255025,NUP210P1,TCTEX1D2,C3orf43,SDHAP1,COL6A5,GK5,PLCXD2,GCET2,UTS2D,ALS2CL,TMIE,LSAMP-AS3,SLC9A9,C3orf64,LOC285205,EPHA6,DNAJB8-AS1,FBXW12,C3orf38,HTR3E,ENTPD3-AS1,ZNF619,ZNF621,RABL3,IGSF10,C3orf33,LOC285326,CCDC66,SLC9A10,C3orf23,ZNF660,FLJ39534,LOC285359,SUMF1,RPUSD3,PRRT3,LOC285370,LOC285375,DPH3,C3orf70,TPRG1,LOC285401,ILDR1,TRIM59,TRIM42,EIF4E3,RAB43,CCDC39,CCDC36,KY,LOC339862,LOC339874,C3orf35,LOC339894,GADL1,PRSS42,LOC339926,LPP-AS2,H1FX-AS1,LOC344595,LRRIQ4,SAMD7,AADACL2,GPR149,ZNF860,TMPRSS7,CD200R1L,PAQR9,COL6A4P1,LOC344887,RTP2,OSTN,ATP13A5,SOX2-OT,NME9,WDR53,LNP1,CCDC37,NPHP3-AS1,TPRXL,ANKRD18DP,NMNAT3,ZNF445,SPATA12,LHFPL4,C3orf77,C3orf62,TMEM110,LRRC33,PRSS45,AMIGO3,ZNF662,CDHR4,FAM212A,IQCF2,IQCF5,MUSTN1,VGLL3,PRR23B,PRR23C,PLSCR5,ANKUB1,LEKR1,TMEM212,VENTXP7,LOC401052,IQCF3,LOC401074,FLJ22763,FLJ25363,C3orf72,LOC401093,C3orf80,FLJ46066,FLJ42393,FLJ34208,LOC401109,OR5K2,OR5H14,OR5H15,OR5K3,OR5K4,MIRLET7G,MIR128-2,MIR135A1,MIR138-1,MIR15B,MIR16-2,MIR191,MIR198,MIR26A1,FAM19A1,STX19,LOC440944,FLJ33065,TMEM89,IQCF6,C3orf78,LOC440970,MIR425,ARGFX,SNORA6,SNORA7A,SNORD2,SNORA4,TMPPE,TMEM30C,LOC644714,ALG1L2,LOC644990,LOC645206,TXNRD3NB,TMEM14E,LOC646168,COL6A4P2,SPINK8,C3orf71,LOC646498,C3orf65,LOC646903,PA2G4P4,LOC647107,GMNC,LOC647323,FLJ20518,LOC653712,IQCJ,SCARNA7,LINC00488,SNORA7B,SNORA58,SNORA81,SNORD19,FAM86DP,SNORD66,SNORD69,MIR548A2,MIR548A3,MIR551B,MIR563,MIR564,MIR567,MIR568,MIR569,MIR570,GXYLT2,SDHAP2,FAM157A,FAM198A,CCR2,FAM86HP,PRR23A,LOC730091,ESRG,LOC100009676,SNORD19B,LOC100125556,MIR922,MIR885,MIR944,EGOT,GHRLOS,LOC100128023,WWTR1-AS1,LOC100128164,C3orf74,LOC100128640,NRADDP,LOC100129480,LOC100129550,ZBTB20-AS1,LOC100131551,LOC100131635,ZNF717,LOC100132146,LOC100132526,BSN-AS2,SNAR-I,MIR1224,TIPARP-AS1,PRSS46,LOC100287879,LOC100288428,FRG2C,LOC100289361,MIR1284,MIR1248,MIR1280,MIR548I1,MIR1324,MIR1226,LOC100302640,MIR548H2,MIR711,MIR548G,MIR3136,MIR4270,MIR4272,MIR4271,MIR4273,LOC100498859,MIR3919,MIR3921,MIR3938,MIR3714,IQCJ-SCHIP1,FGD5-AS1,LOC100505687,LOC100505696,KRBOX1,PVRL3-AS1,IGSF11-AS1,MYLK-AS1,IQCF4,LOC100506994,LOC100507032,MFI2-AS1,LOC100507062,LOC100507086,ADAMTS9-AS2,LOC100507389,LOC100507391,ARHGEF26-AS1,LOC100507537,LOC100507582,ARPC4-TTLL3,ABHD14A-ACY1,TMEM110-MUSTN1,NPHP3-ACAD11,ISY1-RAB43,TM4SF19-TCTEX1D2,MIR4793,MIR4787,MIR4795,MIR4796,MIR4797,MIR4788,MIR4791,MIR4790,MIR548AC,MIR4444-1,MIR4789,MIR4443,MIR4792,MIR4446,MIR4442,LOC100652759,LUST, 3 POU1F1,CHMP2B,MIR4795, 0 3p11.2 0.24825 -6 4 91494256 92060755 91039783 92525195 91155780 93222143 1 FAM190A, 1 FAM190A, 0 4q22.1 3.5663e-07 -7 5 58279015 65311841 58261529 59787458 58261529 59787458 3 hsa-mir-582,PDE4D,PART1, 3 hsa-mir-582,PDE4D,PART1, 0 5q11.2 1.0387e-05 -8 6 101240763 116232098 108878404 109007761 93944759 122743738 129 hsa-mir-3144,hsa-mir-548b,hsa-mir-587,hsa-mir-2113,AIM1,AMD1,PRDM1,CCNC,COL10A1,EPHA7,FOXO3,FRK,FYN,GJA1,GPR6,GRIK2,HDAC2,HSF2,KPNA5,LAMA4,MARCKS,MAN1A1,PLN,POU3F2,PREP,REV3L,ROS1,SIM1,SMPD2,NR2E1,TSPYL1,DDO,SNX3,CD164,WISP3,WASF1,FHL5,ATG5,ZBTB24,FIG4,FUT9,TRAF3IP2,ASCC3,BVES,SEC63,CDK19,TSPYL4,UFL1,BRD7P3,ASF1A,PNISR,FBXL4,SESN1,OSTM1,NDUFAF4,DSE,TUBE1,C6orf203,CDC40,RWDD1,COQ3,SOBP,QRSL1,PDSS2,GOPC,HACE1,BEND3,PRDM13,POPDC3,MICAL1,FAM184A,MANEA,GPR63,ARMC2,RPF2,MCHR2,FAXC,RTN4IP1,USP45,SLC22A16,KIAA1919,GTF3C6,KLHL32,NUS1,SLC16A10,BVES-AS1,CCDC162P,AKD1,NT5DC1,FAM26D,ZUFSP,FAM162B,C6orf170,HS3ST5,GPRC6A,RFX6,SLC35F1,VGLL2,LACE1,MMS22L,FAM26E,MCM9,SCML4,CEP57L1,PPIL6,LOC285758,FLJ34503,DCBLD1,LOC285762,RSPH4A,LINC00222,CEP85L,LIN28B,FAM26F,GSTM2P1,RFPL4B,C6orf225,TSG1,TRAF3IP2-AS1,MIR548B,LOC728012,TPI1P3,C6orf186,BET3L,LOC100130890,LOC100287632,MIR2113,MIR548H3,LOC100422737, 1 FOXO3, 0 6q21 0.015461 -9 6 1915388 1916030 1622846 2414213 1014281 5997515 39 BPHL,SERPINB1,FOXF2,FOXC1,GMDS,IRF4,NQO2,SERPINB6,SERPINB9,TUBB2A,RIPK1,PRPF4B,CDYL,ECI2,FARS2,RPP40,FAM50B,EXOC2,WRNIP1,DUSP22,LYRM4,SLC22A23,FOXQ1,HUS1B,C6orf195,PXDC1,MGC39372,FAM217A,LOC285768,MYLK4,TUBB2B,PSMG4,DKFZP686I15217,C6orf201,PPP1R3G,MIR3691,LOC100507194,LOC100508120,MIR4645, 2 GMDS,LOC100508120, 0 6p25.3 0.11868 -10 6 154802665 155118439 155053583 155157466 151183875 170903919 114 hsa-mir-1913,hsa-mir-1202,hsa-mir-1273c,ACAT2,CCR6,ESR1,GPR31,IGF2R,KIF25,LPA,MAS1,MAP3K4,MLLT4,OPRM1,PARK2,PDCD2,PLG,PSMB1,RPS6KA2,SLC22A1,SLC22A3,SLC22A2,SOD2,T,TBP,TCP1,TCP10,TCTE3,DYNLT1,THBS2,EZR,VIP,RNASET2,SYNJ2,QKI,WTAP,AKAP12,PDE10A,FGFR1OP,SCAF8,SYNE1,MTHFD1L,IPCEF1,TIAM2,C6orf123,FBXO5,RGS17,DLL1,MRPL18,CLDN20,NOX3,TFB1M,SNX9,BRP44L,UNC93A,MTRF1L,RMND1,PHF10,C6orf70,AGPAT4,TULP4,ARID1B,TMEM181,ZBTB2,SMOC2,C6orf211,ZDHHC14,FRMD1,AGPAT4-IT1,C6orf208,C6orf97,MYCT1,LPAL2,RSPH3,TTLL2,FAM120B,FNDC1,SERAC1,LINC00473,SYTL3,SFT2D1,TAGAP,PACRG,CNKSR3,PNLDC1,LOC154449,DACT2,C6orf118,OSTCP1,WDR27,LOC285796,PRR18,C6orf120,DKFZp451B082,TCP10L2,LINC00242,GTF2H5,LOC441177,MLLT4-AS1,SNORA20,SNORA29,TMEM242,LOC729603,HGC6.3,LOC100129518,C6orf99,LOC100289495,MIR1913,MIR3918,MIR3939,MIR3692,CAHM,MIR4466,MIR4644, 1 SCAF8, 0 6q25.2 0.16838 -11 9 20868287 24074100 21963430 21976870 21868908 22446297 4 CDKN2A,CDKN2B,C9orf53,CDKN2B-AS1, 2 CDKN2A,C9orf53, 0 9p21.3 6.0681e-35 -12 9 101906121 101906447 101865111 101917706 101833187 101975331 1 TGFBR1, 1 TGFBR1, 0 9q22.33 0.068736 -13 9 9219787 9219833 8312601 10617850 8312601 12689377 1 PTPRD, 1 PTPRD, 0 9p24.1 0.058678 -14 10 89565700 89641300 89577746 133112924 83637195 133777786 417 hsa-mir-378c,hsa-mir-4297,hsa-mir-4296,hsa-mir-2110,hsa-mir-4295,hsa-mir-548e,hsa-mir-609,hsa-mir-936,hsa-mir-1307,hsa-mir-146b,hsa-mir-3158-1,hsa-mir-608,hsa-mir-1287,hsa-mir-607,hsa-mir-3157,hsa-mir-107,hsa-mir-346,ACADSB,ACTA2,ADD3,ADRA2A,ADRB1,FAS,ARL3,BMPR1A,CASP7,ENTPD1,CHUK,ABCC2,COL17A1,COX15,CPN1,CTBP2,CYP2C19,CYP2C8,CYP2C9,CYP2C18,CYP17A1,CYP26A1,DMBT1,DNTT,DOCK1,DUSP5,EMX2,FGF8,FGFR2,GFRA1,GLUD1,GOT1,PRLHR,GPR26,GRK5,GRID1,HABP2,HELLS,HHEX,HMX2,TLX1,HPS1,HTR7,IDE,IFIT2,IFIT1,IFIT3,KIF11,ABLIM1,LIPA,MGMT,MKI67,MXI1,NDUFB8,NFKB2,NRAP,OAT,PAX2,PDE6C,PGAM1,PITX3,PNLIP,PNLIPRP1,PNLIPRP2,PPP1R3C,HTRA1,PSD,PTEN,PTPRE,ALDH18A1,RBP4,RGR,RGS10,SCD,SFRP5,FBXW4,SLC18A2,SLIT1,SNCG,TAF5,TCF7L2,TECTB,TIAL1,TLL2,UROS,WNT8B,XPNPEP1,SHOC2,ADAM12,LIPF,EIF3A,GBF1,LDB1,BTRC,CH25H,PKD2L1,BTAF1,PAPSS2,INA,PDLIM1,SMC3,NEURL,BUB3,LGI1,NOLC1,GSTO1,BAG3,MINPP1,KIF20B,SH3PXD2A,FAM53B,SLK,ZNF518A,DCLRE1A,FRAT1,ACTR1A,SMNDC1,NPM3,GLRX3,RPP30,TACC2,SORBS1,ERLIN1,LBX1,NRG3,MGEA5,PRDX3,C10orf116,VAX1,ATE1,LDB3,SEC23IP,RAB11FIP2,CPEB3,INPP5F,NT5C2,PDCD11,SORCS3,WAPAL,PPRC1,FAM175B,RRP12,TBC1D12,DNMBP,FRAT2,IFIT5,DPCD,SEC31B,ATRNL1,C10orf137,LRIT1,TCTN3,C10orf12,ANKRD2,CNNM1,MYOF,ANKRD1,GHITM,PDCD4,C10orf28,POLL,BLNK,KCNIP2,CUZD1,EXOSC1,CALHM2,CUTC,PLCE1,CHST15,SUFU,ACSL5,PANK1,FAM190B,EXOC6,FAM35A,CCNJ,MARCH5,ZRANB1,NSMCE4A,CNNM2,C10orf26,C10orf118,CRTAC1,CEP55,CWF19L1,RNLS,PI4K2A,HIF1AN,WDR11,FAM178A,DHX32,PPP2R2D,FAM45B,TDRD1,BCCIP,C10orf2,TM9SF3,ENTPD7,AS3MT,STAMBPL1,GPAM,KIAA1598,FAM160B1,SEMA4G,PLEKHA1,AVPI1,HPSE2,FAM204A,LHPP,MMS19,NOC3L,IKZF5,ZDHHC6,CUEDC2,FBXL15,C10orf76,HPS6,MMRN2,TMEM180,MCMBP,C10orf95,C10orf81,PDZD7,OBFC1,C10orf88,UBTD1,WDR96,TNKS2,TRIM8,KAZALD1,SFXN3,SLC25A28,ELOVL3,MARVELD1,PCGF6,LOXL4,ZDHHC16,PCGF5,LZTS2,LCOR,MRPL43,AFAP1L2,PYROXD2,USMG5,ATAD1,ARHGAP19,ITPRIP,LINC00263,CDHR1,BBIP1,FANK1,OPALIN,OPN4,HOGA1,SORCS1,C10orf90,BTBD16,FAM24A,PSTK,PIK3AP1,MORN4,ZFYVE27,MMP21,FRA10AC1,ANKRD22,SFXN2,PDZD8,C10orf32,NUDT9P1,AGAP11,GSTO2,SFR1,CALHM3,CTAGE7P,CLRN3,PNLIPRP3,SFXN4,CPXM2,C10orf129,LIPJ,CFL1P1,TRUB1,VTI1A,LOC143188,HECTD2,FGFBP3,C10orf82,C10orf46,NKX2-3,SLC35G1,CCDC147,LOC170425,EMX2OS,PPAPDC1A,FAM24B,EBF3,CALHM1,CASC2,TCERG1L,HSPA12A,PIPSL,BLOC1S2,RBM20,LOC282997,FLJ37201,LOC283038,LOC283089,O3FAR1,KCNK18,LIPM,CYP26C1,VWA2,NANOS1,LRIT2,HMX3,NHLRC2,C10orf96,FLJ46361,C10orf99,SLC16A12,CC2D2B,ENO4,ARMS2,C10orf122,LOC387723,GUCY2GP,NKX1-2,FLJ41350,C10orf120,LOC399815,METTL10,FLJ37035,FOXI2,FLJ46300,GOLGA7B,FAM45A,MIR107,C10orf62,LOC439994,IFIT1B,MIR346,MIR146B,NPS,SNORA19,FAM196A,FAM25A,LIPK,LIPN,LOC643529,RPL13AP6,SNORA12,MIR608,MIR609,FAM22A,FAM22D,LOC728190,LOC728218,LOC728558,LOC729020,TLX1NB,MIR936,C10orf131,LOC100128054,KLLN,LOC100169752,LOC100188947,DNMBP-AS1,LOC100289509,MIR1287,MIR1307,MIR2110,FAS-AS1,MIR378C,MIR4297,MIR3157,MIR3158-1,MIR4295,MIR3158-2,MIR4296,MIR3941,MIR3663,LOC100505540,LOC100505761,LOC100505839,LOC100505933,LOC100507470,MARK2P9,C10orf32-AS3MT,ARHGAP19-SLIT1,FAM24B-CUZD1,MIR4680,MIR4679-1,MIR4483,MIR4679-2,MIR4678,MIR4682,MIR4482-1,MIR4484,MIR4681,MIR4685, 382 hsa-mir-378c,hsa-mir-4297,hsa-mir-4296,hsa-mir-2110,hsa-mir-4295,hsa-mir-548e,hsa-mir-609,hsa-mir-936,hsa-mir-1307,hsa-mir-146b,hsa-mir-3158-1,hsa-mir-608,hsa-mir-1287,hsa-mir-607,hsa-mir-3157,hsa-mir-107,ACADSB,ACTA2,ADD3,ADRA2A,ADRB1,FAS,ARL3,CASP7,ENTPD1,CHUK,ABCC2,COL17A1,COX15,CPN1,CTBP2,CYP2C19,CYP2C8,CYP2C9,CYP2C18,CYP17A1,CYP26A1,DMBT1,DNTT,DOCK1,DUSP5,EMX2,FGF8,FGFR2,GFRA1,GOT1,PRLHR,GPR26,GRK5,HABP2,HELLS,HHEX,HMX2,TLX1,HPS1,HTR7,IDE,IFIT2,IFIT1,IFIT3,KIF11,ABLIM1,LIPA,MGMT,MKI67,MXI1,NDUFB8,NFKB2,NRAP,OAT,PAX2,PDE6C,PGAM1,PITX3,PNLIP,PNLIPRP1,PNLIPRP2,PPP1R3C,HTRA1,PSD,PTEN,PTPRE,ALDH18A1,RBP4,RGS10,SCD,SFRP5,FBXW4,SLC18A2,SLIT1,TAF5,TCF7L2,TECTB,TIAL1,TLL2,UROS,WNT8B,XPNPEP1,SHOC2,ADAM12,LIPF,EIF3A,GBF1,LDB1,BTRC,CH25H,PKD2L1,BTAF1,INA,PDLIM1,SMC3,NEURL,BUB3,LGI1,NOLC1,GSTO1,BAG3,KIF20B,SH3PXD2A,FAM53B,SLK,ZNF518A,DCLRE1A,FRAT1,ACTR1A,SMNDC1,NPM3,GLRX3,RPP30,TACC2,SORBS1,ERLIN1,LBX1,MGEA5,PRDX3,VAX1,ATE1,SEC23IP,RAB11FIP2,CPEB3,INPP5F,NT5C2,PDCD11,SORCS3,PPRC1,FAM175B,RRP12,TBC1D12,DNMBP,FRAT2,IFIT5,DPCD,SEC31B,ATRNL1,C10orf137,TCTN3,C10orf12,ANKRD2,CNNM1,MYOF,ANKRD1,PDCD4,C10orf28,POLL,BLNK,KCNIP2,CUZD1,EXOSC1,CALHM2,CUTC,PLCE1,CHST15,SUFU,ACSL5,PANK1,EXOC6,CCNJ,MARCH5,ZRANB1,NSMCE4A,CNNM2,C10orf26,C10orf118,CRTAC1,CEP55,CWF19L1,RNLS,PI4K2A,HIF1AN,WDR11,FAM178A,DHX32,FAM45B,TDRD1,BCCIP,C10orf2,TM9SF3,ENTPD7,AS3MT,STAMBPL1,GPAM,KIAA1598,FAM160B1,SEMA4G,PLEKHA1,AVPI1,HPSE2,FAM204A,LHPP,MMS19,NOC3L,IKZF5,ZDHHC6,CUEDC2,FBXL15,C10orf76,HPS6,TMEM180,MCMBP,C10orf95,C10orf81,PDZD7,OBFC1,C10orf88,UBTD1,WDR96,TNKS2,TRIM8,KAZALD1,SFXN3,SLC25A28,ELOVL3,MARVELD1,PCGF6,LOXL4,ZDHHC16,PCGF5,LZTS2,LCOR,MRPL43,AFAP1L2,PYROXD2,USMG5,ARHGAP19,ITPRIP,LINC00263,BBIP1,FANK1,OPALIN,HOGA1,SORCS1,C10orf90,BTBD16,FAM24A,PSTK,PIK3AP1,MORN4,ZFYVE27,MMP21,FRA10AC1,ANKRD22,SFXN2,PDZD8,C10orf32,NUDT9P1,GSTO2,SFR1,CALHM3,CTAGE7P,CLRN3,PNLIPRP3,SFXN4,CPXM2,C10orf129,LIPJ,CFL1P1,TRUB1,VTI1A,LOC143188,HECTD2,FGFBP3,C10orf82,C10orf46,NKX2-3,SLC35G1,CCDC147,EMX2OS,PPAPDC1A,FAM24B,EBF3,CALHM1,CASC2,TCERG1L,HSPA12A,PIPSL,BLOC1S2,RBM20,LOC282997,FLJ37201,LOC283038,LOC283089,O3FAR1,KCNK18,LIPM,CYP26C1,VWA2,NANOS1,HMX3,NHLRC2,C10orf96,FLJ46361,SLC16A12,CC2D2B,ENO4,ARMS2,C10orf122,LOC387723,GUCY2GP,NKX1-2,FLJ41350,C10orf120,LOC399815,METTL10,FLJ37035,FOXI2,GOLGA7B,FAM45A,MIR107,C10orf62,IFIT1B,MIR146B,NPS,SNORA19,FAM196A,LIPK,LIPN,LOC643529,RPL13AP6,SNORA12,MIR608,MIR609,LOC728558,LOC729020,TLX1NB,MIR936,C10orf131,LOC100128054,KLLN,LOC100169752,LOC100188947,DNMBP-AS1,LOC100289509,MIR1287,MIR1307,MIR2110,FAS-AS1,MIR378C,MIR4297,MIR3157,MIR3158-1,MIR4295,MIR3158-2,MIR4296,MIR3941,MIR3663,LOC100505540,LOC100505761,LOC100505839,LOC100505933,MARK2P9,C10orf32-AS3MT,ARHGAP19-SLIT1,FAM24B-CUZD1,MIR4680,MIR4679-1,MIR4483,MIR4679-2,MIR4682,MIR4482-1,MIR4484,MIR4681,MIR4685, 0 10q23.31 0.16929 -15 12 11581774 11582045 11477535 11717811 889902 133161346 1200 hsa-mir-4304,hsa-mir-1178,hsa-mir-620,hsa-mir-1302-1,hsa-mir-619,hsa-mir-1827,hsa-mir-4303,hsa-mir-135a-2,hsa-mir-1251,hsa-mir-331,hsa-mir-492,hsa-mir-618,hsa-mir-617,hsa-mir-1252,hsa-mir-1279,hsa-mir-548c,hsa-let-7i,hsa-mir-26a-2,hsa-mir-616,hsa-mir-1228,hsa-mir-148b,hsa-mir-615,hsa-mir-196a-2,hsa-mir-1293,hsa-mir-1291,hsa-mir-4302,hsa-mir-920,hsa-mir-614,hsa-mir-613,hsa-mir-1244-3,hsa-mir-141,A2M,A2MP1,ACACB,ACADS,ACCN2,ACVR1B,ACVRL1,ADCY6,ALDH2,ABCD2,AMHR2,APAF1,APOF,APOBEC1,AQP2,AQP5,AQP6,ARF3,ARHGDIB,ARL1,ART4,ASCL1,ATF1,ATP2A2,ATP2B1,ATP5B,ATP5G2,AVPR1A,BCAT1,BCL7A,BICD1,BTG1,C1R,C1S,C3AR1,CACNA1C,CACNB3,CCND2,CCNT1,CD4,CD9,CD27,SCARB1,CD63,CD69,CDK2,CDK4,CDKN1B,CHD4,CMKLR1,CNTN1,COL2A1,COX6A1,CPM,CREBL2,CRY1,CS,CSRP2,CYP27B1,DGKA,DAO,DCN,DDIT3,DDX11,ATN1,EPYC,DTX1,DUSP6,PHC1,EIF2B1,EIF4B,CELA1,ELK3,EMP1,ENO2,STX2,EPS8,ERBB3,ETV6,FGF6,FKBP4,FOXM1,B4GALNT1,GAPDH,BLOC1S1,GLI1,GNB3,GNS,GOLGA3,GPD1,GPR19,GRIN2B,GTF2H3,GUCY2C,GYS2,HAL,NCKAP1L,NR4A1,HNRNPA1,HOXC4,HOXC5,HOXC6,HOXC8,HOXC9,HOXC10,HOXC11,HOXC12,HOXC13,HPD,IAPP,IFNG,IGF1,IGFBP6,INHBC,ITGA5,ITGA7,ITGB7,ITPR2,KCNA1,KCNA5,KCNA6,KCNC2,KCNJ8,KIF5A,KLRB1,KLRC1,KLRC2,KLRC3,KLRD1,KRAS,KRT1,KRT2,KRT3,KRT4,KRT5,KRT6A,KRT6B,KRT7,KRT8,KRT18,KRT81,KRT82,KRT83,KRT84,KRT85,KRT86,LAG3,LALBA,LDHB,LRMP,LRP1,LRP6,LTA4H,LTBR,LUM,LYZ,M6PR,MARS,MDM2,METTL1,KITLG,MGP,MGST1,MIP,MMP17,MMP19,MSI1,MVK,MYBPC1,MYF5,MYF6,MYL2,MYL6,MYO1A,PPP1R12A,NAB2,NACA,NAP1L1,NDUFA9,NELL2,NFE2,NFYB,NINJ2,NOP2,NOS1,CNOT2,SLC11A2,NTF3,NTS,OAS1,OAS2,OAS3,OLR1,P2RX4,P2RX7,PA2G4,PEBP1,PAH,PAWR,PCBP2,CDK17,PDE3A,PDE6H,PDE1B,PFDN5,PFKM,SLC25A3,PIK3C2G,PKP2,PLA2G1B,PMCH,POLE,POU6F1,PPP1CC,PPP1R1A,PRB1,PRB3,PRB4,PRH1,PRH2,PRIM1,PRKAB1,PRKAG1,PRPH,PSMD9,PTHLH,TWF1,PTMS,PTPN6,PTPN11,PTPRB,PTPRO,PTPRR,PXMP2,PXN,PEX5,PZP,RAB5B,RAD52,RAN,RAP1B,RARG,KDM5A,RBMS2,RDH5,RECQL,RFC5,RFX4,RNY5,RPL6,RPL41,RPLP0,RPS26,CLIP1,TSPAN31,ATXN2,SCN8A,SCNN1A,SELPLG,SFSWAP,SHMT2,ST8SIA1,PMEL,SLC2A3,SLC6A12,SLC6A13,SLCO1A2,SMARCC2,SMARCD1,SNRPF,SOX5,SP1,STAT2,STAT6,SUOX,VAMP1,SYT1,TAC3,TARBP2,TBX5,TBX3,HNF1A,TDG,TEAD4,TMBIM6,TFCP2,TSPAN8,TMPO,TNFRSF1A,TPI1,NR2C1,HSP90B1,TULP3,TXNRD1,UBC,UBE2N,UNG,VDR,VWF,WNT1,WNT10B,ZNF10,ZNF26,ZNF84,ZNF140,MAP3K12,TUBA1A,FGF23,MFAP5,USP5,MLF2,SSPN,MLL2,AAAS,YEATS4,HMGA2,ALX1,CDK2AP1,KLRC4,BRAP,ULK1,EEA1,SOAT2,RASAL1,DYRK2,PPFIBP1,PPFIA2,CSDA,LGR5,MAPKAPK5,DENR,RDH16,NPFF,HSD17B6,OASL,DYNLL1,SRSF9,GALNT4,CRADD,HRK,ADAM1,DYRK4,LIN7A,SOCS2,HCAR3,ENDOU,TIMELESS,HIP1R,GPRC5A,KRT75,SCAF11,RASSF9,SLC16A7,PIWIL1,CD163,MED21,DDX23,CABP1,SLC4A8,GDF3,NCOR2,WSCD2,ESPL1,SART3,KNTC1,CLSTN3,MLEC,DAZAP2,GIT2,KIAA0748,KIAA0528,ZBTB39,NUAK1,RBM19,NCAPD2,RNF10,PAN2,USP15,NR1H4,CLEC2B,SH2B3,TROAP,DNM1L,ABCC9,ARPC3,TSFM,CTDSP2,YAF2,PLXNC1,LPCAT3,RNF41,MPHOSPH9,KLRG1,GDF11,LRRC23,TMEM5,CNPY2,TUBA1B,RAPGEF3,EMG1,MCRS1,IPO8,LEPREL2,DCTN2,AKAP3,CCT2,SLCO1B1,RAD51AP1,CAMKK2,AVIL,PTGES3,KLRAP1,ZNF268,FRS2,TSPAN9,TRAFD1,OS9,TMED2,ERP29,CKAP4,GCN1L1,METAP2,SDS,GLIPR1,ATF7,RAB35,CPSF6,SNRNP35,KERA,KRR1,PRDM4,CIT,PWP1,FICD,NUDT4,STRAP,BAZ2A,WIF1,FZD10,IRAK3,GALNT6,RASSF8,NXPH4,XPOT,PRR4,GPR182,PHB2,COPZ1,PHLDA1,R3HDM2,MLXIP,RPH3A,KLRK1,P2RX2,RAB21,STK38L,FBXO21,FAIM2,MON2,SETD1B,UHRF1BP1L,ERC1,DDN,ANKLE2,TMEM194A,CUX2,KIAA1033,TBC1D30,ESYT1,TENC1,MED13L,ZDHHC17,SIRT4,KCNH3,GRIP1,ABCB9,CBX5,ISCU,RIMBP2,ANP32D,ATP6V0A2,SMUG1,LEMD3,CORO1C,GABARAPL1,PRPF40B,MGAT4C,METTL7A,LETMD1,METTL21B,IFFO1,ZNF385A,NECAP1,FGFR1OP2,CLEC4E,FBXW8,GALNT8,HSPB8,SNORD59A,GLS2,HCAR1,GPR162,RND1,UTP20,KCNMB4,SLCO1B3,MRPL42,IFT81,CCDC59,ORMDL2,TBK1,CLEC2D,RACGAP1,SENP1,FAM216A,HCFC2,PDZRN4,TRHDE,SYCP3,CHST11,GALNT9,IL22,COPS7A,TAS2R9,TAS2R8,TAS2R7,TAS2R13,TAS2R10,TAS2R14,DHH,CLEC4A,HEBP1,CCDC53,GOLT1B,PLEKHA8P1,YARS2,DERA,CCDC41,IRAK4,ING4,GPN3,DDX47,GLTP,MRPL51,CLEC1B,CLEC1A,C12orf47,C1RL,ERGIC2,FKBP11,ARL6IP4,TAOK3,KLRF1,KRT76,POP5,CSAD,BIN2,ANAPC5,ANAPC7,LIMA1,TRIAP1,PPHLN1,NT5DC3,IL23A,HDAC7,TMBIM4,VPS29,WBP11,TM7SF3,TPCN1,GPR84,SLCO1C1,SLC38A2,SSH1,PRR13,PLEKHA5,RHOF,VSIG10,MANSC1,KANSL2,TESC,PARPBP,TAPBPL,SLC38A4,MAGOHB,SLC6A15,FAM90A1,RIC8B,C12orf35,APPL2,PLEKHG6,SBNO1,CASC1,TMEM19,CCDC91,DRAM1,STYK1,ETNK1,GPRC5D,SLC35E3,SVOP,STAB2,VEZT,GOLGA2P5,ZCCHC8,KIF21A,SLC48A1,SCYL2,POLR3B,FAR2,LMBR1L,ASUN,ATF7IP,CHFR,H2AFJ,FGD6,IL26,FOXJ2,CAND1,ITFG2,WSB2,LMO3,CMAS,NDUFA12,PRMT8,DIABLO,MDM1,ANKS1B,NDUFA4L2,ARNTL2,CHPT1,PARP11,ANO2,C12orf4,C12orf5,LPAR5,NUP107,SMAGP,AICDA,TMCC3,PPM1H,RIMKLB,SRGAP1,KLHDC5,PITPNM2,DIP2B,KIAA1467,EP400,DHX37,CALCOCO1,FBRSL1,DDX55,NCKAP5L,NEUROD4,FAM60A,NTN4,TRPV4,C12orf10,MRPS35,C12orf44,LHX5,ARHGAP9,IKZF4,SUDS3,ACTR6,CLEC7A,TBC1D15,C12orf43,SLC26A10,VPS33A,RSRC2,WNK1,SPATS2,CAPRIN2,AACS,TMEM106C,NUP37,OBFC2B,DDX54,NOC4L,GNPTAB,BHLHE41,B3GNT4,BCL2L14,TCTN1,ADIPOR2,ACSS3,RPAP3,OGFOD2,VPS37B,BBS10,RERGL,C12orf49,PIP4K2C,FLJ13224,TCTN2,PLBD1,PYROXD1,NANOG,DNAJC22,NAA25,SLC24A6,ADAMTS20,CEP290,RNF34,CCDC92,MTERFD3,PUS1,ACAD10,C12orf39,DUSP16,WNT5B,SLC38A1,CSRNP2,APOLD1,GSG1,PUS7L,CDCA3,GLT8D2,THAP2,C12orf32,NRIP2,INHBE,RBP5,TMTC1,KCTD10,RACGAP1P,FAM186B,USP44,SLC41A2,LRRIQ1,C12orf26,TMEM117,TCHP,COQ5,LLPH,WIBG,CCDC77,SARNP,HVCN1,ACRBP,SRRM4,CCDC62,KDM2B,CAPS2,SPSB2,UNC119B,USP30,EFCAB4B,TUBA1C,ZC3H10,ORAI1,RNFT2,C12orf34,ALG10,SPRYD3,C12orf52,MFSD5,MGC14436,C12orf62,RERG,DNAJC14,ZCRB1,CCDC65,ANKRD13A,NAV3,PLCZ1,TMEM116,UBE3B,LACRT,C12orf23,FMNL3,CERS5,C12orf29,XRCC6BP1,FAM113B,C12orf65,TMEM132C,CCDC64,HELB,MARCH9,COQ10A,HTR7P1,CACNA2D4,CAPZA3,CLEC6A,KRT71,C12orf57,LARP4,SDSL,SLC2A13,MBD6,TMEM132B,OSBPL8,ARHGEF25,C12orf56,IQCD,LOC116437,AGAP2,DCD,RAB3IP,LOH12CR1,MUCL1,DEPDC4,LRRK2,CCDC38,C12orf59,FAM186A,C12orf45,OR10P1,SDR9C7,LRIG3,TMEM132D,SLC15A4,RHEBL1,C12orf54,ZNF641,OR10AD1,TPH2,SP7,GTSF1,OR10A7,KRT74,NEDD1,SLC9A7P1,IKBIP,HIST4H4,ERP27,FGD4,AEBP2,ASCL4,BTBD11,SPIC,ANO4,ALKBH2,FOXN4,SPPL3,ASB8,MYL6B,BRI3BP,KRT72,PRICKLE1,AMDHD1,SLC2A14,BCDIN3D,ALG10B,GLIPR1L2,FAM101A,ZNF664,LINC00477,LYRM5,CPNE8,TMEM120B,WDR66,GLT1D1,TSPAN19,BEST3,E2F7,LOC144481,LOC144486,KRT80,A2ML1,LOC144571,C12orf66,C12orf60,FBXL14,RAD9B,FAM109A,LOC144742,KRT19P2,TMTC2,CLEC12A,CLECL1,TMTC3,C12orf50,ALDH1L2,IFLTD1,DENND5B,GRASP,SLC5A8,PPTC7,CCDC63,CCDC60,CLEC4C,ZNF384,DSTNP2,PGAM5,KRT78,RILPL2,DNAH10,AMN1,DTX3,METTL7B,C12orf77,ZFC3H1,PLBD2,FAM71C,RMST,C12orf12,C12orf53,DCP1B,ANO6,ARID2,RPSAP52,SLC17A8,STAC3,C12orf33,GNN,MSRB3,METTL20,LRRC43,OR6C74,OR6C3,TCP11L2,LOC255411,LOC255480,LOC256021,GLIPR1L1,TAS2R43,TAS2R31,TAS2R46,TAS2R30,TAS2R19,TAS2R20,TAS2R50,POC1B,OTOGL,MATL2963,CD163L1,LOC283332,LOC283335,ZNF740,RPL13P5,RASSF3,B4GALNT3,OR6C6,ANKRD52,SLC39A5,SPRYD4,GPR133,MORN3,LOC283392,LOC283403,LOC283404,C12orf61,DPY19L2,CLEC9A,C12orf36,GAS2L3,LINC00485,LOC283440,MYO1H,C12orf51,KSR2,GATC,HNF1A-AS1,C12orf40,GXYLT1,TMPRSS12,KRT6C,DDX51,KRT73,MMAB,CLEC4D,HCAR2,LOC338758,C1QL4,TMEM119,KRT79,LOC338799,C12orf74,FAM19A2,LOC338817,SLCO1B7,C12orf70,OVCH1,SYT10,ACSM4,ANKRD33,OR6C2,OR6C4,H1FNT,OR8S1,AMIGO2,EP400NL,RILPL1,TAS2R42,DPPA3,NANOGNB,LOC374443,KRT77,PTPRQ,C12orf42,LRRC10,IL31,CLEC2A,CLEC12B,RPL13AP20,REP15,C12orf68,C12orf75,CCDC42B,TMEM233,SETD8,LOC387895,LOC389634,OR6C1,OR6C75,OR6C76,OR6C70,LOC400027,LOC400043,FLJ41278,MKRN9P,C12orf76,LOC400084,FLJ37505,FIGNL2,OR6C65,OR6C68,MIRLET7I,MIR135A2,MIR141,MIR196A2,MIR200C,MIR26A2,C12orf37,IQSEC3,ZNF705A,FAM66C,DDX12P,C12orf69,H3F3C,DBX2,FLJ12825,TMEM198B,PLEKHG7,LOC440117,FLJ31485,NUDT4P1,TSPAN11,OR9K2,MIR148B,MIR331,EID3,LOH12CR2,ATXN7L3B,CLLU1OS,CLLU1,MIR492,LOC574538,HIGD1C,POU5F1P3,LOC642846,MAP1LC3B2,LOC643339,LOC643770,GLYCAM1,LOC647589,FAM86FP,PRB2,LRTM2,HNRNPA1P10,SCARNA12,SCARNA11,FAM138D,SNORA2A,SNORA2B,SNORA34,SNORA49,SNORA53,LOC678655,SNORD59B,SCARNA10,MIR548C,MIR613,MIR614,MIR615,MIR617,MIR618,MIR620,LOC728084,C12orf73,SKP1P2,LOC728739,C12orf71,SLC15A5,MRS2P2,HOTAIR,MIR920,LOC100128191,LOC100128554,LOC100129361,LOC100130238,LOC100130776,LOC100131138,LOC100131733,LOC100190940,LOC100233209,LOC100240734,LOC100240735,LOC100271702,LOC100286844,MANSC4,LOC100287314,LINC00173,LOC100287944,LOC100288778,ZNF605,LOC100292680,MIR1252,MIR1279,MIR1228,MIR1827,MIR1293,MIR1291,MIR1178,MIR1244-1,MIR1251,LOC100335030,SNORA70G,MIR1244-3,MIR1244-2,MIR4302,MIR4303,MIR4304,KLRF2,LOC100499405,MIR3685,MIR3649,MIR3612,MIR3652,MIR3922,MIR548Z,MIR3913-2,MIR3913-1,MIR3908,LOC100505978,LOC100506314,LOC100506393,LOC100506451,LOC100506649,LOC100506660,LOC100506668,LOC100506844,LOC100507055,LOC100507066,LOC100507091,LOC100507206,LOC100507250,LOC100507377,LOC100507424,BLOC1S1-RDH5,POC1B-GALNT4,KLRC4-KLRK1,ZNF664-FAM101A,PRH1-PRR4,MIR4699,MIR4498,MIR548AL,MIR4701,MIR3974,MIR4472-2,MIR4700,MIR3198-2,MIR4497,MIR4698,LOC100652846,LOC100652999, 3 PRB1,LOC338817,PRB2, 0 12p13.2 0.23106 -16 13 40857430 44166351 41485211 47374717 39915840 67862094 131 hsa-mir-3169,hsa-mir-1297,hsa-mir-759,hsa-mir-15a,hsa-mir-3168,hsa-mir-621,hsa-mir-4305,ATP7B,RCBTB2,CPB2,ELF1,ESD,FOXO1,MLNR,GTF2F2,GUCY1B2,HTR2A,KPNA3,LCP1,NEK3,PCDH8,PCDH9,RB1,TPT1,TNFSF11,SUCLA2,DLEU2,TSC22D1,ITM2B,MTRF1,UTP14C,LPAR6,SLC25A15,LHFP,TRIM13,MRPS31,DLEU1,OLFM4,SUGT1,LECT1,WBP4,AKAP11,FNDC3A,KIAA0564,ZC3H13,LRCH1,INTS6,CKAP2,NUFIP1,PCDH17,C13orf15,MED4,DNAJC15,VPS36,PHF11,ENOX1,RCBTB1,NUDT15,KIAA1704,THSD1,CYSLTR2,SPRYD7,COG6,PCDH20,NAA16,RNASEH2B,DHRS12,KIAA0226L,TDRD3,CDADC1,CAB39L,DIAPH3,CCDC70,COG3,SETDB2,KBTBD7,EBPL,KBTBD6,EPSTI1,ARL11,WDFY2,LINC00284,PRR20A,FAM216B,LACC1,LINC00330,HNRNPA1L2,ST13P4,DGKH,CCDC122,FAM194B,SPERT,DLEU7,FAM124A,TPTE2P3,CTAGE10P,SLC25A30,OR7E156P,SUGT1P3,SIAH3,KCNRG,LINC00282,NEK5,THSD1P1,KCTD4,SERP2,LINC00548,MIR15A,MIR16-1,ALG11,TSC22D1-AS1,TTL,SERPINE3,SNORA31,MIR621,PRR20B,PRR20C,PRR20D,PRR20E,TPT1-AS1,MIR1297,MIR759,MIR320D1,MIR4305,MIR3169,MIR3613,OR7E37P,LOC100507240,LOC100509894,MIR4703,LOC100616668, 45 hsa-mir-3168,CPB2,ELF1,ESD,GTF2F2,LCP1,TPT1,TNFSF11,TSC22D1,MTRF1,WBP4,AKAP11,KIAA0564,ZC3H13,LRCH1,NUFIP1,C13orf15,DNAJC15,ENOX1,KIAA1704,NAA16,KIAA0226L,COG3,KBTBD7,KBTBD6,EPSTI1,LINC00284,FAM216B,LACC1,LINC00330,DGKH,CCDC122,FAM194B,SPERT,SLC25A30,SUGT1P3,SIAH3,KCTD4,SERP2,TSC22D1-AS1,SNORA31,TPT1-AS1,OR7E37P,LOC100507240,LOC100509894, 0 13q14.11 0.014805 -17 15 28487894 28488272 28099124 31134902 24928792 32932819 130 hsa-mir-211,APBA2,CHRNA7,GABRA5,GABRB3,GABRG3,IPW,TRPM1,OCA2,SNRPN,TJP1,UBE3A,PAR5,HERC2,SNURF,ARHGAP11A,FAN1,FAM189A1,DKFZP434L187,KLF13,MTMR10,NDNL2,ATP10A,CHRFAM7A,ULK4P3,ULK4P1,ARHGAP11B,SNORD107,PAR1,OTUD7A,LOC283710,GOLGA8G,SNORD108,SNORD109A,SNORD109B,SNORD115-1,SNORD64,PAR4,PAR-SN,MIR211,HERC2P9,WHAMMP2,LOC503519,LOC646278,LOC653075,SNORD116-19,SNORD116-1,SNORD116-2,SNORD116-3,SNORD116-4,SNORD116-5,SNORD116-6,SNORD116-7,SNORD116-8,SNORD116-9,SNORD116-10,SNORD116-11,SNORD116-12,SNORD116-13,SNORD116-14,SNORD116-15,SNORD116-16,SNORD116-17,SNORD116-18,SNORD116-20,SNORD116-21,SNORD116-22,SNORD116-23,SNORD116-24,SNORD116-25,SNORD115-2,SNORD116-26,SNORD116-27,SNORD115-3,SNORD115-4,SNORD115-5,SNORD115-6,SNORD115-7,SNORD115-8,SNORD115-9,SNORD115-10,SNORD115-11,SNORD115-12,SNORD115-13,SNORD115-14,SNORD115-15,SNORD115-16,SNORD115-17,SNORD115-18,SNORD115-19,SNORD115-20,SNORD115-21,SNORD115-22,SNORD115-23,SNORD115-25,SNORD115-26,SNORD115-29,SNORD115-30,SNORD115-31,SNORD115-32,SNORD115-33,SNORD115-34,SNORD115-35,SNORD115-36,SNORD115-37,SNORD115-38,SNORD115-39,SNORD115-40,SNORD115-41,SNORD115-42,SNORD115-43,SNORD115-44,SNORD116-28,SNORD116-29,SNORD115-48,SNORD115-24,SNORD115-27,SNORD115-28,SNORD115-45,SNORD115-47,LOC100128714,GOLGA8F,ULK4P2,LOC100288615,LOC100288637,LOC100289656,MIR4509-1,MIR4509-2,MIR4509-3,MIR4715, 22 APBA2,TJP1,HERC2,FAM189A1,DKFZP434L187,NDNL2,CHRFAM7A,ULK4P3,ULK4P1,ARHGAP11B,GOLGA8G,HERC2P9,WHAMMP2,LOC646278,LOC653075,GOLGA8F,ULK4P2,LOC100288637,LOC100289656,MIR4509-1,MIR4509-2,MIR4509-3, 0 15q12 0.13153 -18 16 3055639 4036155 3773953 3932725 3769143 4010711 1 CREBBP, 1 CREBBP, 0 16p13.3 0.0066248 -19 16 78583434 78585129 78129906 79246771 54315370 89379936 383 hsa-mir-1910,hsa-mir-3182,hsa-mir-1972-2,hsa-mir-140,hsa-mir-1538,hsa-mir-328,hsa-mir-138-2,AARS,AP1G1,AFG3L1P,AGRP,AMFR,APRT,ZFHX3,BBS2,C16orf3,CA5A,CA7,CALB2,CBFA2T3,CBFB,CDH1,CDH3,CDH5,CDH8,CDH11,CDH13,CDH15,CDH16,CES1,CETP,CNGB1,COX4I1,CSNK2A2,CTRB1,CTRL,CYBA,DHODH,NQO1,DYNC1LI2,DPEP1,E2F4,FANCA,FOXF1,FOXL1,FOXC2,GALNS,GAS8,GCSH,GLG1,GNAO1,GOT2,HAS3,HP,HPR,HSBP1,HSD11B2,HSD17B2,HSF4,IRF8,KARS,KIFC3,LCAT,MAF,MC1R,CHST6,MMP2,MMP15,MT1A,MT1B,MT1E,MT1F,MT1G,MT1H,MT1JP,MT1M,MT1L,MT1X,MT2A,MT3,MVD,NFATC3,CHMP1A,PLCG2,POLR2C,PSKH1,PSMB10,PSMD7,RPL13,RRAD,CCL17,CCL22,CX3CL1,ST3GAL2,SLC6A2,SLC9A5,SLC12A3,SLC12A4,SNTB2,SPG7,TAT,TERF2,TK2,ZNF19,ZNF23,GAN,SLC7A5,CDK10,TRADD,MBTPS1,CES2,NAE1,NOL3,TAF1C,SLC7A6,USP10,ATP6V0D1,GPR56,BCAR1,C16orf7,NUP93,HERPUD1,KIAA0513,PIEZO1,DHX38,IST1,ATP2C2,CLEC3A,CHST4,MPHOSPH6,NUTF2,IRX5,KATNB1,COX4NB,TUBB3,CFDP1,CTCF,NFAT5,NUDT21,WWP2,PRDM7,DDX19B,GABARAPL2,MON1B,TCF25,CNOT1,PHLPP2,ZCCHC14,KIAA0182,ATMIN,COTL1,MLYCD,SF3B3,CES3,ADAT1,CHST5,ARL2BP,EDC4,PLA2G15,COG4,PLEKHG4,DKFZP434H168,LRRC29,CPNE7,VPS4A,IL17C,NOB1,CCDC113,TMEM208,C16orf80,FHOD1,ANKRD11,ZDHHC1,OSGIN1,PARD6A,PLLP,CKLF,NIP7,FAM96B,GINS2,TPPP3,TRAPPC2L,CES1P1,WWOX,BCMO1,TERF2IP,PRMT7,NECAB2,KLHDC4,HYDIN,DEF8,DUS2L,CHTF8,LPCAT2,TXNL4B,BANP,PDPR,RFWD3,SLC38A7,OGFOD1,LRRC36,DDX19A,FBXL8,SMPD3,ZNF821,ZDHHC7,VAC14,DOK4,FTSJD1,DDX28,TSNAXIP1,CENPN,C16orf61,COQ9,CIAPIN1,THAP11,JPH3,PDP2,ZNF319,RANBP10,VAT1L,KIAA1609,WFDC1,PDF,DPEP2,DPEP3,MTHFSD,GINS3,NDRG4,ACD,DBNDD1,FA2H,IRX6,IRX3,FAM65A,TMEM231,TMCO7,C16orf57,WDR59,ELMO3,KLHL36,FBXO31,SETD6,ESRP2,FAM192A,CENPT,C16orf70,CYB5B,CMIP,GFOD2,CDT1,MAP1LC3B,PMFBP1,DYNLRB2,HSDL1,CRISPLD2,C16orf48,SLC7A6OS,NLRC5,CCDC135,CAPNS2,COG8,SPIRE2,MT4,ZNF469,B3GNT9,CIRH1A,ZNRF1,CNTNAP4,RSPRY1,MARVELD3,MTSS1L,CENPBD1,ZNF276,CCDC102A,KCNG4,SDR42E1,CMTM1,PKD1L2,RNF166,EXOSC6,C16orf46,DNAAF1,NRN1L,CMTM3,SPATA2L,C16orf55,ZC3H18,CDYL2,TMEM170A,SLC38A8,ZFP90,RLTPR,KCTD19,CMTM4,CMTM2,BEAN1,SLC22A31,IL34,TMED6,FLJ30679,LOC146513,ZFPM1,ADAD2,ZFP1,ADAMTS18,MGC23284,LINC00311,LDHD,FUK,MLKL,ZNF778,ACSF3,CPNE2,GPR114,PRSS54,CES5A,GPR97,CCDC79,CES4A,EXOC3L1,LOC283856,LINC00304,LOC283867,HTA,LOC283922,NUDT7,PDXDC2P,CLEC18C,MT1DP,SNAI3,FAM92B,ATXN1L,PKD1L3,CLEC18A,CTU2,TEPP,C16orf86,CES1P2,PABPN1L,LOC400548,LOC400550,LOC400558,C16orf74,MIR138-2,MIR140,CTRB2,MIR328,CLEC18B,SNORD68,CRNDE,MT1IP,LOC644649,KIAA0895L,SNORA46,SNORA50,SNORD71,SNORD111,LOC727710,LOC729513,LOC732275,SNORD111B,LOC100128881,LOC100129617,LOC100130015,LOC100130894,SYCE1L,LOC100287036,MIR1538,MIR1972-1,MIR1910,SNORA70D,MIR3182,MIR1972-2,MIR3935,LOC100505865,LOC100506083,LOC100506172,C16orf95,CKLF-CMTM1,MIR4720,MIR4722,MIR4719, 1 WWOX, 0 16q23.1 0.20572 -20 17 12946683 17325325 15878586 15903602 14132778 15994168 19 ADORA2B,MEIS3P1,PMP22,HS3ST3B1,TRIM16,TTC19,ZNF286A,TEKT3,MGC12916,CDRT7,ZSWIM7,CDRT15,FAM18B2,CDRT4,TBC1D26,CDRT1,CDRT15P2,FAM18B2-CDRT4,MIR4731, 1 ZSWIM7, 0 17p12 0.00078231 diff --git a/core/src/test/resources/data_clinical_caises.xml b/core/src/test/resources/data_clinical_caises.xml deleted file mode 100644 index 589235da0cb..00000000000 --- a/core/src/test/resources/data_clinical_caises.xml +++ /dev/null @@ -1,850 +0,0 @@ - - - - White Non-Hispanic - 97115001 - 66 - - - Standard of care abiraterone - - - - - 0 - 2004-08-17 - UICC_02 - T2c - N0 - M1 - - - - - 3116 - 2013-02-27 - 1 - - - - - ACP - N/D - - - 3116 - 2013-02-27 - ALK - 79.0 - U/L - - - 3116 - 2013-02-27 - HGB - 12.2 - g/L - - - 3116 - 2013-02-27 - LDH - 176 - U/L - - - 3116 - 2013-02-27 - Phos - 0.86 - mmol/L - - - 0 - 2004-08-17 - PSA - 4.7 - ng/ml - - - 3116 - 2013-02-27 - PSA - 8.6 - ug/L - - - TEST - N/D - - - - - 59 - 2004-10-15 - HORM - Prostate Cancer - Zoladex (goserelin) - 10.8 - mg - Every 3 months - - - 568 - 2006-03-08 - HORM - Prostate Cancer - Bicalutamide - 850 - 2006-12-15 - - - 932 - 2007-03-07 - HORM - Prostate Cancer - Olaparib - 2034 - 2010-03-13 - 200 - mg - Twice Daily - - - 2173 - 2010-07-30 - CHEMO - Prostate Cancer - Carboplatin - 2194 - 2010-08-20 - - - 2365 - 2011-02-07 - CHEMO - Prostate Cancer - Docetaxel - 2521 - 2011-07-13 - - - 2702 - 2012-01-10 - CLIN_TRIAL - Biomarin Phase I PARP trial - 2788 - 2012-04-05 - - - 2802 - 2012-04-19 - HORM - Prostate Cancer - Abiraterone Acetate - 1000 - mg - Daily - - - 3159 - 2013-04-11 - CLIN_TRIAL - Prostate Cancer - BKM120 Phase 1B trial - 100-120 - mg - Daily - - - 3167 - 2013-04-19 - STEROID - Prostate Cancer - Dexamethasone - 0.5 - mg - Daily - - - - - 0 - 2004-08-17 - Biopsy - Adenocarcinoma - MOD - - - - 4 - 3 - 7 - - - - - - - 0 - 2004-08-17 - Biopsy - - - 2036 - 2010-03-15 - TURP - Exact date of the procedure not known - - - - - 2128 - 2010-06-15 - Radiation Therapy, Unspecified - Local Recurrence - Prostate and Pelvis - 2144 - 2010-07-01 - 39/13 to prostate+ 30/10 to pelvis - - - - - 3095 - 2013-02-06 - Penis, Ventral Shaft - Pre-Treatment (A) - Snap frozen in foil and dry ice - - - Analysis Complete - Tissue - Soft Tissue - Fresh Frozen, Snap - 97115001-T-A-1 - 13:50 - 14:26 - Adequate - - - - - 3135 - 2013-03-18 - Pre-Treatment (A) - No buffy coat layer identified - - - Banked by Pathology - Blood - Serum - 97115001-S-1 - 15:20 - 17:10 - Adequate - - - Banked by Pathology - Blood - Serum - 97115001-S-2 - 15:20 - 17:10 - Adequate - - - Banked by Pathology - Blood - Plasma - 97115001-P-1 - 15:20 - 17:10 - Adequate - - - Banked by Pathology - Blood - Plasma - 97115001-P-2 - 15:20 - 17:10 - Adequate - - - Blood - Buffy Coat - 97115001-B-1 - - - Blood - Buccolic Swab - 97115001-BU-1 - - - Banked by Pathology - Blood - PAXgene - 97115001-PAX-2 - 15:20 - 17:26 - Adequate - - - Banked by Pathology - Blood - PAXgene - 97115001-PAX-1 - 15:20 - 17:26 - Adequate - - - - - - - 0 - 2004-08-17 - Diagnosis Date - - - 885 - 2007-01-19 - Clinical Mets Castrate - - - - - White Non-Hispanic - 97115002 - 78 - - - Other: Bicalutamide - - - - - 3517 - 2013-02-15 - HORM - Bicalutamide - 3537 - 2013-03-07 - Progression - - - 3537 - 2013-03-07 - HORM - Zoladex (goserelin) - 10.8 - mg - Every 3 months - - - - - 2453 - 2010-03-19 - Cystoprostectomy - - - 0 - 2003-07-01 - TURP - - - - - 0 - 2003-07-01 - Brachytherapy - 0 - 2003-07-01 - - - 2557 - 2010-07-01 - Radiation Therapy, Unspecified - 2557 - 2010-07-01 - - - - - 3536 - 2013-03-06 - Right iliac crest - Post-Treatment (C) - 8G 4 in - - - Analysis Complete - Tissue - Bone - Fresh Frozen, Direct - 97115002-T-C-1 - 12:03 - 12:04 - Adequate - - - - - 3536 - 2013-03-06 - Pre-Treatment (A) - SST tube drawn separetly at 12:40 - - - Banked by Pathology - Blood - Serum - 97115002-S-1 - 11:30 - 15:10 - Adequate - - - Banked by Pathology - Blood - Serum - 97115002-S-2 - 11:30 - 15:10 - Adequate - - - Banked by Pathology - Blood - Plasma - 97115002-P-1 - 11:30 - 13:22 - Adequate - - - Banked by Pathology - Blood - Plasma - 97115002-P-2 - 11:30 - 13:22 - Adequate - - - Library Construction Unsuccessful - Blood - Buffy Coat - 97115002-B-1 - 11:30 - 13:22 - Adequate - - - In Transit to Analysis - Blood - Buccolic Swab - 97115002-BU-1 - Adequate - - - Banked by Pathology - Blood - PAXgene - 97115002-PAX-1 - 11:30 - 15:13 - Adequate - - - Banked by Pathology - Blood - PAXgene - 97115002-PAX-2 - 11:30 - 15:13 - Adequate - - - - - - - 0 - 2003-07-01 - Diagnosis Date - - - 3653 - 2013-07-01 - Clinical Mets Castrate - - - - - White Non-Hispanic - 97115003 - 73 - - - Standard of care abiraterone - - - - - 0 - 2000-02-08 - UICC_02 - T3b - N0 - M0 - - - - - 731 - 2002-02-08 - PSA - 21.2 - ng/ml - - - - - 36 - 2000-03-15 - HORM - Zoladex (goserelin) - 3528 - 2009-10-06 - 10.8 - mg - Every 3 months - Progression - - - 1498 - 2004-03-16 - HORM - Casodex (bicalutamide) - 2058 - 2005-09-27 - 50 - mg - Daily - Progression - - - 2307 - 2006-06-03 - HORM - Dexamethasone - 3528 - 2009-10-06 - 0.5 - mg - Daily - Progression - - - 3808 - 2010-07-13 - HORM - Cyproterone acetate - 3858 - 2010-09-01 - 100 - mg - Three Times Daily - Completed Treatment - - - 3815 - 2010-07-20 - HORM - Zoladex (goserelin) - 10.8 - mg - Every 3 months - - - 3528 - 2009-10-06 - HORM - Pamidronate (Aredia) - 3717 - 2010-04-13 - Unknown - - - 3909 - 2010-10-22 - HORM - Zoledronic Acid (Zometa) - 3979 - 2010-12-31 - 4 - mg - Every 3 months - Unknown - - - 4523 - 2012-06-27 - HORM - Abiraterone Acetate - 4775 - 2013-03-06 - 250 - mg - Four Times Daily - Progression - - - 4234 - 2011-09-12 - CHEMO - Docetaxel (part of OGX-011-11) - 4375 - 2012-01-31 - 106 - mg - every 3 weeks - 6 - Toxicity - - - 4719 - 2013-01-09 - CLIN_TRIAL - AT13387 - 4761 - 2013-02-20 - 363 - mg - Three Times Weekly - 2 - Progression - - - 4234 - 2011-09-12 - HORM - Custirsen (part of OGX-011-11) - 4375 - 2012-01-31 - 640 - mg - Three Times Weekly - 6 - Toxicity - - - 4803 - 2013-04-03 - CHEMO - Cabazitaxel - 20 - mg - every 3 weeks - - - 4040 - 2011-03-02 - AA - MDV3100/placebo - 4181 - 2011-07-21 - 40 - 160 - mg - Orally - Daily - - - - - 4749 - 2013-02-08 - Biopsy - Adenocarcinoma - POOR - - - UICC_02 - pT3b - N0 - M0 - G3 - - - - - 3 - 5 - 8 - - - - - - - 4749 - 2013-02-08 - Biopsy - - - - - 2830 - 2007-11-08 - High dose - Palliative - Prostate - 2876 - 2007-12-24 - 36 - Gy - 6 - Completed Treatment - - - 4781 - 2013-03-12 - External Beam - Palliative - L1-L5 spine - 4787 - 2013-03-18 - 20 - Gy - 5 - Completed Treatment - - - - - 4523 - 2012-06-27 - Left Supraclavicular node - Pre-Treatment (A) - 18G - Snap frozen in foil and liquid nitrogen - - - Analysis Complete - Tissue - Soft Tissue - Fresh Frozen, Snap - 97115003-T-A-1 - 12:54 - 12:55 - Adequate - - - - - 4787 - 2013-03-18 - Pre-Treatment (A) - No buffy coat layer identified - - - Banked by Pathology - Blood - Serum - 97115003-S-1 - 11:45 - 14:01 - Adequate - - - Banked by Pathology - Blood - Serum - 97115003-S-2 - 11:45 - 14:01 - Adequate - - - Banked by Pathology - Blood - Plasma - 97115003-P-1 - 11:45 - 14:01 - Adequate - - - Banked by Pathology - Blood - Plasma - 97115003-P-2 - 11:45 - 14:01 - Adequate - - - Blood - Buffy Coat - 97115003-B-1 - - - Blood - Buccolic Swab - 97115003-BU-1 - - - Banked by Pathology - Blood - PAXgene - 97115003-PAX-1 - 11:45 - 14:01 - Adequate - - - Banked by Pathology - Blood - PAXgene - 97115003-PAX-2 - 11:45 - 14:01 - Adequate - - - - - - - 0 - 2000-02-08 - Diagnosis Date - - - 15 - 2000-02-23 - Localized - - - 1001 - 2002-11-05 - Rising PSA Non-Castrate - - - 2058 - 2005-09-27 - Rising PSA Castrate - - - 4096 - 2011-04-27 - Clinical Mets Castrate - - - - \ No newline at end of file diff --git a/core/src/test/resources/data_cna_discrete_import_test.txt b/core/src/test/resources/data_cna_discrete_import_test.txt deleted file mode 100644 index 643010a3ec8..00000000000 --- a/core/src/test/resources/data_cna_discrete_import_test.txt +++ /dev/null @@ -1,26 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -ETV1 2115 TCGA-A1-A0SB-11 2 -P2RY10 27334 TCGA-A1-A0SB-11 2 -KIAA1549 57670 TCGA-A1-A0SB-11 2 -ADAMTS20 80070 TCGA-A1-A0SB-11 2 -ABLIM1 3983 TCGA-A1-A0SB-11 2 - -ETV1 2115 TCGA-A2-A04U-11 -2 Putative_Passenger Test passenger Class 2 Class annotation -P2RY10 27334 TCGA-A2-A04U-11 -2 Putative_Driver Test driver Class 1 Class annotation -KIAA1549 57670 TCGA-A2-A04U-11 -2 -ADAMTS20 80070 TCGA-A2-A04U-11 -2 - -# partial deletion gets converted into full deletion: -ABLIM1 3983 TCGA-A2-A04U-11 -1.5 Putative_Passenger Test passenger - -# Ignore hemizygous deletion and value gain: -OTOR 56914 TCGA-A2-A04U-11 0 -OTOR 56914 TCGA-A1-A0SB-11 1 -FGFR3 2261 TCGA-A2-A04U-11 0 Putative_Driver Test driver -FGFR3 2261 TCGA-A1-A0SB-11 -1 - -# This line references two genes: it will be ignored -AKT1 /// AKT2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 - -# This gene-sample combi already exists: it will be ignored -KIAA1549 57670 TCGA-A2-A04U-11 2 diff --git a/core/src/test/resources/data_cna_discrete_import_test_with_cna_events_missing.txt b/core/src/test/resources/data_cna_discrete_import_test_with_cna_events_missing.txt deleted file mode 100644 index c331de476f3..00000000000 --- a/core/src/test/resources/data_cna_discrete_import_test_with_cna_events_missing.txt +++ /dev/null @@ -1,6 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -KIAA1549 57670 TCGA-A1-A0SB-11 2 -KIAA1549 57670 TCGA-A2-A04U-11 -2 -ETV1 2115 TCGA-A1-A0SB-11 2 -# Missing event is imported in genetic_alteration table as empty value: -# ETV1 2115 TCGA-A2-A04U-11 -2 diff --git a/core/src/test/resources/data_cna_discrete_import_test_with_namespaces.txt b/core/src/test/resources/data_cna_discrete_import_test_with_namespaces.txt deleted file mode 100644 index 8fac01570e6..00000000000 --- a/core/src/test/resources/data_cna_discrete_import_test_with_namespaces.txt +++ /dev/null @@ -1,3 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 MyNamespace2.blarp InvalidNamespace.column1 -ETV1 2115 TCGA-A1-A0SB-11 2 MyValue1 MyValue2 blorp InvalidValue -P2RY10 27334 TCGA-A1-A0SB-11 2 bloerp diff --git a/core/src/test/resources/data_cna_discrete_import_test_with_namespaces2.txt b/core/src/test/resources/data_cna_discrete_import_test_with_namespaces2.txt deleted file mode 100644 index 47c8c8f4be3..00000000000 --- a/core/src/test/resources/data_cna_discrete_import_test_with_namespaces2.txt +++ /dev/null @@ -1,3 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 MyNamespace2.blarp InvalidNamespace.column1 -P2RY10 27334 TCGA-A1-A0SB-11 2 v1a v2a bloerp -P2RY10 27334 TCGA-A2-A04U-11 2 v1b v2b bleurp diff --git a/core/src/test/resources/data_cna_discrete_import_test_with_wrong_entrez_and_correct_hugo.txt b/core/src/test/resources/data_cna_discrete_import_test_with_wrong_entrez_and_correct_hugo.txt deleted file mode 100644 index 2464ae2bfac..00000000000 --- a/core/src/test/resources/data_cna_discrete_import_test_with_wrong_entrez_and_correct_hugo.txt +++ /dev/null @@ -1,3 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -KIAA1549 123456 TCGA-A1-A0SB-11 2 -KIAA1549 123456 TCGA-A2-A04U-11 -2 diff --git a/core/src/test/resources/data_cna_discrete_import_test_without_entrez_with_hugo.txt b/core/src/test/resources/data_cna_discrete_import_test_without_entrez_with_hugo.txt deleted file mode 100644 index aed6a11d558..00000000000 --- a/core/src/test/resources/data_cna_discrete_import_test_without_entrez_with_hugo.txt +++ /dev/null @@ -1,3 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -KIAA1549 NA TCGA-A1-A0SB-11 2 -KIAA1549 TCGA-A2-A04U-11 -2 diff --git a/core/src/test/resources/data_cna_discrete_import_test_without_namespaces.txt b/core/src/test/resources/data_cna_discrete_import_test_without_namespaces.txt deleted file mode 100644 index 3473cf73ec4..00000000000 --- a/core/src/test/resources/data_cna_discrete_import_test_without_namespaces.txt +++ /dev/null @@ -1,2 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -ETV1 2115 TCGA-A1-A0SB-11 2 diff --git a/core/src/test/resources/data_cna_pd_annotations.txt b/core/src/test/resources/data_cna_pd_annotations.txt deleted file mode 100644 index d7be30f82b7..00000000000 --- a/core/src/test/resources/data_cna_pd_annotations.txt +++ /dev/null @@ -1,3 +0,0 @@ -SAMPLE_ID Entrez_Gene_Id cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -TCGA-02-0001-01 999999672 Putative_Passenger Test passenger Class 2 Class 2 annotation -TCGA-02-0003-01 999999675 Putative_Driver Test driver Class 1 Class 1 annotation diff --git a/core/src/test/resources/data_mRNA_ZbyNorm.txt b/core/src/test/resources/data_mRNA_ZbyNorm.txt deleted file mode 100644 index 5116d2eae95..00000000000 --- a/core/src/test/resources/data_mRNA_ZbyNorm.txt +++ /dev/null @@ -1,6 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-02-0001 TCGA-02-0002 TCGA-02-0003 TCGA-02-0004 TCGA-02-0005 TCGA-02-0006 -AACS 65985 NA NA NA NA NA NA -ELMO2 63916 2.5981 -0.8660 -0.8660 0.8660 0.8660 4.3301 -TP53 7157 NA NA NA NA NA NA -RPS11 6205 -0.8660 2.5981 0.8660 0.8660 -0.8660 -2.5981 -PNMA1 9240 0.4330 0.8660 -0.8660 0.8660 -0.8660 1.7321 diff --git a/core/src/test/resources/data_mutational_signature.txt b/core/src/test/resources/data_mutational_signature.txt deleted file mode 100644 index 3f256f35a08..00000000000 --- a/core/src/test/resources/data_mutational_signature.txt +++ /dev/null @@ -1,61 +0,0 @@ -ENTITY_STABLE_ID name description TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_10 mean_10 mean_10 0.002709404 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_11 mean_11 mean_11 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 -mean_12 mean_12 mean_12 0.026432791 0.012953054 0.002587003 0.02225923 0.031026708 0.01642898 0.022392184 0.013437576 -mean_13 mean_13 mean_13 0.002533773 0.012080707 0.06750656 0.403672528 0.011124 0.007631916 0.018970187 0.006076126 -mean_14 mean_14 mean_14 0.006562519 0.009705064 0.005008429 0.01169992 0.02000342 0.014500145 0.034613722 0.030906098 -mean_15 mean_15 mean_15 0.011970661 0.013967505 0.003583145 0.066176992 0.024139531 0.012422269 0.035150854 0.024233274 -mean_16 mean_16 mean_16 0.018075581 0.016174795 0.004085478 0.044836595 0.021500178 0.033960161 0.017962899 0.018849434 -mean_17 mean_17 mean_17 0.004132642 0.017328434 0.001582939 0.00748642 0.018217142 0.008715209 0.029658706 0.021823903 -mean_18 mean_18 mean_18 0.005101312 0.027691339 0.078176692 0.007035636 0.016781154 0.226542324 0.030862216 0.05876765 -mean_19 mean_19 mean_19 0.018196853 0.016768977 0.010922822 0.014000266 0.011772131 0.011231503 0.035316214 0.094947481 -mean_2 mean_2 mean_2 0.002663685 0.009194336 0.003716748 0.067693367 0.019050891 0.008820839 0.024258107 0.005814542 -mean_20 mean_20 mean_20 0.03066836 0.012905178 0.003569324 0.014119672 0.022474579 0.014813438 0.055457368 0.030155165 -mean_21 mean_21 mean_21 0.010964959 0.011272353 0.002258851 0.051853446 0.281501917 0.01281546 0.044179589 0.008190074 -mean_22 mean_22 mean_22 0.028491957 0.010217024 0.004586289 0.011222009 0.019770493 0.008535491 0.024637853 0.020913163 -mean_23 mean_23 mean_23 0.00396734 0.010046981 0.01277244 0.007964559 0.011004478 0.008391836 0.034836096 0.03286779 -mean_24 mean_24 mean_24 0.032792827 0.078245387 0.066150339 0.014742662 0.017324086 0.061761186 0.017605536 0.051708779 -mean_25 mean_25 mean_25 0.011646217 0.048154399 0.03076214 0.013605822 0.038587852 0.013944057 0.023546505 0.037501919 -mean_26 mean_26 mean_26 0.015537112 0.013825612 0.002464907 0.028813826 0.070298683 0.01999462 0.030799083 0.009143951 -mean_27 mean_27 mean_27 0.003465676 0.012766477 0.004909123 0.00658944 0.010038977 0.008511252 0.023474418 0.009076485 -mean_28 mean_28 mean_28 0.003755223 0.011667726 0.001739293 0.005067195 0.012723938 0.007772049 0.021565925 0.007837668 -mean_29 mean_29 mean_29 0.010813509 0.013306168 0.034629865 0.011708457 0.01498353 0.042949985 0.030807758 0.04361619 -mean_3 mean_3 mean_3 0.012076334 0.399378181 0.058149399 0.024712129 0.022463858 0.069775315 0.022253226 0.023919542 -mean_30 mean_30 mean_30 0.021187235 0.019180665 0.007104322 0.015637667 0.021432941 0.020436345 0.036460701 0.022300431 -mean_4 mean_4 mean_4 0.02998631 0.05161966 0.066550323 0.017921856 0.016096543 0.179497941 0.024659786 0.097992724 -mean_5 mean_5 mean_5 0.065346508 0.065105663 0.005317173 0.039082099 0.025806853 0.071908149 0.028765511 0.030413987 -mean_6 mean_6 mean_6 0.215904676 0.009298163 0.004855268 0.020464262 0.030032579 0.01055262 0.094946543 0.100148333 -mean_7 mean_7 mean_7 0.008428142 0.011008883 0.009634254 0.010727403 0.037470752 0.007375711 0.036357093 0.025096172 -mean_8 mean_8 mean_8 0.009033066 0.04154581 0.483003282 0.014265047 0.029063134 0.028977736 0.026974185 0.031083861 -mean_9 mean_9 mean_9 0.011252674 0.014910352 0.004377151 0.007775086 0.021277177 0.015334168 0.020390915 0.009638392 -confidence_1 confidence_1 confidence_1 0.653 0.066 0.05 0.129 0.1415 0.079 0.234 0.274 -confidence_10 confidence_10 confidence_10 0.0235 0.0645 0.022 0.0465 0.2595 0.1505 0.1 0.062 -confidence_11 confidence_11 confidence_11 0.0465 0.067 0.115 0.0775 0.0745 0.0535 0.0995 0.098 -confidence_12 confidence_12 confidence_12 0.1375 0.068 0.024 0.1275 0.1165 0.0945 0.09 0.074 -confidence_13 confidence_13 confidence_13 0.0185 0.0685 0.5655 0.936 0.0665 0.052 0.083 0.0515 -confidence_14 confidence_14 confidence_14 0.054 0.067 0.0405 0.0785 0.0845 0.0755 0.119 0.1415 -confidence_15 confidence_15 confidence_15 0.0745 0.0745 0.034 0.284 0.092 0.0745 0.1185 0.1215 -confidence_16 confidence_16 confidence_16 0.1025 0.0795 0.031 0.196 0.1 0.139 0.0815 0.0895 -confidence_17 confidence_17 confidence_17 0.036 0.0825 0.011 0.0605 0.094 0.0555 0.11 0.1105 -confidence_18 confidence_18 confidence_18 0.0445 0.1105 0.297 0.0615 0.069 0.434 0.1055 0.1965 -confidence_19 confidence_19 confidence_19 0.0955 0.073 0.0885 0.086 0.0725 0.065 0.114 0.2685 -confidence_2 confidence_2 confidence_2 0.0235 0.0525 0.0325 0.293 0.0945 0.057 0.1015 0.0415 -confidence_20 confidence_20 confidence_20 0.14 0.0745 0.0305 0.0835 0.101 0.0725 0.1505 0.1325 -confidence_21 confidence_21 confidence_21 0.0725 0.072 0.0215 0.24 0.5255 0.09 0.131 0.0635 -confidence_22 confidence_22 confidence_22 0.2335 0.0685 0.0415 0.09 0.0865 0.063 0.103 0.126 -confidence_23 confidence_23 confidence_23 0.0365 0.0605 0.12 0.0635 0.064 0.0615 0.112 0.1525 -confidence_24 confidence_24 confidence_24 0.1975 0.1925 0.297 0.0905 0.081 0.215 0.08 0.195 -confidence_25 confidence_25 confidence_25 0.0695 0.134 0.132 0.083 0.123 0.079 0.094 0.1365 -confidence_26 confidence_26 confidence_26 0.0955 0.073 0.023 0.1475 0.183 0.0995 0.109 0.067 -confidence_27 confidence_27 confidence_27 0.0305 0.0795 0.05 0.053 0.0675 0.0605 0.0955 0.064 -confidence_28 confidence_28 confidence_28 0.0325 0.077 0.0135 0.044 0.0785 0.0555 0.1 0.0605 -confidence_29 confidence_29 confidence_29 0.0835 0.0725 0.172 0.074 0.08 0.138 0.111 0.164 -confidence_3 confidence_3 confidence_3 0.083 0.629 0.1835 0.12 0.101 0.21 0.0845 0.1215 -confidence_30 confidence_30 confidence_30 0.123 0.096 0.0625 0.091 0.0995 0.107 0.1145 0.107 -confidence_4 confidence_4 confidence_4 0.1685 0.1485 0.2155 0.1005 0.08 0.382 0.0995 0.2815 -confidence_5 confidence_5 confidence_5 0.218 0.1645 0.0445 0.1665 0.1045 0.187 0.114 0.1155 -confidence_6 confidence_6 confidence_6 0.4325 0.062 0.043 0.1275 0.113 0.069 0.2225 0.2885 -confidence_7 confidence_7 confidence_7 0.0705 0.075 0.0975 0.0765 0.137 0.0545 0.1105 0.1225 -confidence_8 confidence_8 confidence_8 0.07 0.132 0.859 0.0935 0.106 0.123 0.106 0.131 -confidence_9 confidence_9 confidence_9 0.081 0.0775 0.033 0.0615 0.0845 0.082 0.09 0.064 \ No newline at end of file diff --git a/core/src/test/resources/data_mutational_signature_new.txt b/core/src/test/resources/data_mutational_signature_new.txt deleted file mode 100644 index 789d90522f1..00000000000 --- a/core/src/test/resources/data_mutational_signature_new.txt +++ /dev/null @@ -1,61 +0,0 @@ -ENTITY_STABLE_ID name description TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 new mean_1 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_10 mean_10 mean_10 0.002709404 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_11 mean_11 mean_11 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 -mean_12 mean_12 mean_12 0.026432791 0.012953054 0.002587003 0.02225923 0.031026708 0.01642898 0.022392184 0.013437576 -mean_13 mean_13 mean_13 0.002533773 0.012080707 0.06750656 0.403672528 0.011124 0.007631916 0.018970187 0.006076126 -mean_14 mean_14 mean_14 0.006562519 0.009705064 0.005008429 0.01169992 0.02000342 0.014500145 0.034613722 0.030906098 -mean_15 mean_15 mean_15 0.011970661 0.013967505 0.003583145 0.066176992 0.024139531 0.012422269 0.035150854 0.024233274 -mean_16 mean_16 mean_16 0.018075581 0.016174795 0.004085478 0.044836595 0.021500178 0.033960161 0.017962899 0.018849434 -mean_17 mean_17 mean_17 0.004132642 0.017328434 0.001582939 0.00748642 0.018217142 0.008715209 0.029658706 0.021823903 -mean_18 mean_18 mean_18 0.005101312 0.027691339 0.078176692 0.007035636 0.016781154 0.226542324 0.030862216 0.05876765 -mean_19 mean_19 mean_19 0.018196853 0.016768977 0.010922822 0.014000266 0.011772131 0.011231503 0.035316214 0.094947481 -mean_2 mean_2 mean_2 0.002663685 0.009194336 0.003716748 0.067693367 0.019050891 0.008820839 0.024258107 0.005814542 -mean_20 mean_20 mean_20 0.03066836 0.012905178 0.003569324 0.014119672 0.022474579 0.014813438 0.055457368 0.030155165 -mean_21 mean_21 mean_21 0.010964959 0.011272353 0.002258851 0.051853446 0.281501917 0.01281546 0.044179589 0.008190074 -mean_22 mean_22 mean_22 0.028491957 0.010217024 0.004586289 0.011222009 0.019770493 0.008535491 0.024637853 0.020913163 -mean_23 mean_23 mean_23 0.00396734 0.010046981 0.01277244 0.007964559 0.011004478 0.008391836 0.034836096 0.03286779 -mean_24 mean_24 mean_24 0.032792827 0.078245387 0.066150339 0.014742662 0.017324086 0.061761186 0.017605536 0.051708779 -mean_25 mean_25 mean_25 0.011646217 0.048154399 0.03076214 0.013605822 0.038587852 0.013944057 0.023546505 0.037501919 -mean_26 mean_26 mean_26 0.015537112 0.013825612 0.002464907 0.028813826 0.070298683 0.01999462 0.030799083 0.009143951 -mean_27 mean_27 mean_27 0.003465676 0.012766477 0.004909123 0.00658944 0.010038977 0.008511252 0.023474418 0.009076485 -mean_28 mean_28 mean_28 0.003755223 0.011667726 0.001739293 0.005067195 0.012723938 0.007772049 0.021565925 0.007837668 -mean_29 mean_29 mean_29 0.010813509 0.013306168 0.034629865 0.011708457 0.01498353 0.042949985 0.030807758 0.04361619 -mean_3 mean_3 mean_3 0.012076334 0.399378181 0.058149399 0.024712129 0.022463858 0.069775315 0.022253226 0.023919542 -mean_30 mean_30 mean_30 0.021187235 0.019180665 0.007104322 0.015637667 0.021432941 0.020436345 0.036460701 0.022300431 -mean_4 mean_4 mean_4 0.02998631 0.05161966 0.066550323 0.017921856 0.016096543 0.179497941 0.024659786 0.097992724 -mean_5 mean_5 mean_5 0.065346508 0.065105663 0.005317173 0.039082099 0.025806853 0.071908149 0.028765511 0.030413987 -mean_6 mean_6 mean_6 0.215904676 0.009298163 0.004855268 0.020464262 0.030032579 0.01055262 0.094946543 0.100148333 -mean_7 mean_7 mean_7 0.008428142 0.011008883 0.009634254 0.010727403 0.037470752 0.007375711 0.036357093 0.025096172 -mean_8 mean_8 mean_8 0.009033066 0.04154581 0.483003282 0.014265047 0.029063134 0.028977736 0.026974185 0.031083861 -mean_9 mean_9 mean_9 0.011252674 0.014910352 0.004377151 0.007775086 0.021277177 0.015334168 0.020390915 0.009638392 -confidence_1 confidence_1 confidence_1 0.653 0.066 0.05 0.129 0.1415 0.079 0.234 0.274 -confidence_10 confidence_10 confidence_10 0.0235 0.0645 0.022 0.0465 0.2595 0.1505 0.1 0.062 -confidence_11 confidence_11 confidence_11 0.0465 0.067 0.115 0.0775 0.0745 0.0535 0.0995 0.098 -confidence_12 confidence_12 confidence_12 0.1375 0.068 0.024 0.1275 0.1165 0.0945 0.09 0.074 -confidence_13 confidence_13 confidence_13 0.0185 0.0685 0.5655 0.936 0.0665 0.052 0.083 0.0515 -confidence_14 confidence_14 confidence_14 0.054 0.067 0.0405 0.0785 0.0845 0.0755 0.119 0.1415 -confidence_15 confidence_15 confidence_15 0.0745 0.0745 0.034 0.284 0.092 0.0745 0.1185 0.1215 -confidence_16 confidence_16 confidence_16 0.1025 0.0795 0.031 0.196 0.1 0.139 0.0815 0.0895 -confidence_17 confidence_17 confidence_17 0.036 0.0825 0.011 0.0605 0.094 0.0555 0.11 0.1105 -confidence_18 confidence_18 confidence_18 0.0445 0.1105 0.297 0.0615 0.069 0.434 0.1055 0.1965 -confidence_19 confidence_19 confidence_19 0.0955 0.073 0.0885 0.086 0.0725 0.065 0.114 0.2685 -confidence_2 confidence_2 confidence_2 0.0235 0.0525 0.0325 0.293 0.0945 0.057 0.1015 0.0415 -confidence_20 confidence_20 confidence_20 0.14 0.0745 0.0305 0.0835 0.101 0.0725 0.1505 0.1325 -confidence_21 confidence_21 confidence_21 0.0725 0.072 0.0215 0.24 0.5255 0.09 0.131 0.0635 -confidence_22 confidence_22 confidence_22 0.2335 0.0685 0.0415 0.09 0.0865 0.063 0.103 0.126 -confidence_23 confidence_23 confidence_23 0.0365 0.0605 0.12 0.0635 0.064 0.0615 0.112 0.1525 -confidence_24 confidence_24 confidence_24 0.1975 0.1925 0.297 0.0905 0.081 0.215 0.08 0.195 -confidence_25 confidence_25 confidence_25 0.0695 0.134 0.132 0.083 0.123 0.079 0.094 0.1365 -confidence_26 confidence_26 confidence_26 0.0955 0.073 0.023 0.1475 0.183 0.0995 0.109 0.067 -confidence_27 confidence_27 confidence_27 0.0305 0.0795 0.05 0.053 0.0675 0.0605 0.0955 0.064 -confidence_28 confidence_28 confidence_28 0.0325 0.077 0.0135 0.044 0.0785 0.0555 0.1 0.0605 -confidence_29 confidence_29 confidence_29 0.0835 0.0725 0.172 0.074 0.08 0.138 0.111 0.164 -confidence_3 confidence_3 confidence_3 0.083 0.629 0.1835 0.12 0.101 0.21 0.0845 0.1215 -confidence_30 confidence_30 confidence_30 0.123 0.096 0.0625 0.091 0.0995 0.107 0.1145 0.107 -confidence_4 confidence_4 confidence_4 0.1685 0.1485 0.2155 0.1005 0.08 0.382 0.0995 0.2815 -confidence_5 confidence_5 confidence_5 0.218 0.1645 0.0445 0.1665 0.1045 0.187 0.114 0.1155 -confidence_6 confidence_6 confidence_6 0.4325 0.062 0.043 0.1275 0.113 0.069 0.2225 0.2885 -confidence_7 confidence_7 confidence_7 0.0705 0.075 0.0975 0.0765 0.137 0.0545 0.1105 0.1225 -confidence_8 confidence_8 confidence_8 0.07 0.132 0.859 0.0935 0.106 0.123 0.106 0.131 -confidence_9 confidence_9 confidence_9 0.081 0.0775 0.033 0.0615 0.0845 0.082 0.09 0.064 \ No newline at end of file diff --git a/core/src/test/resources/data_mutations_extended.txt b/core/src/test/resources/data_mutations_extended.txt deleted file mode 100644 index bdae001584b..00000000000 --- a/core/src/test/resources/data_mutations_extended.txt +++ /dev/null @@ -1,101 +0,0 @@ -#sequenced_samples: TCGA-AA-3664-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB -HSPG2 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N -CSMD2 -114784 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I -CLSPN 63967 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L -RSPO1 284654 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 37867916 37867916 Missense_Mutation R2Q low mutationassessor.org/?cm=msa&ty=f&p=RSPO1_HUMAN&rb=1&re=150&var=R2Q -SMAP2 64744 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 40646957 40646957 Missense_Mutation A95T medium mutationassessor.org/?cm=msa&ty=f&p=SMAP2_HUMAN&rb=13&re=127&var=A95T mutationassessor.org/pdb.php?prot=SMAP2_HUMAN&from=13&to=127&var=A95T -HPDL 84842 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 45565857 45565857 Silent S150S -- -- -- -ZYG11B 79699 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 53009534 53009534 Missense_Mutation E151K low mutationassessor.org/?cm=msa&ty=f&p=ZY11B_HUMAN&rb=6&re=304&var=E151K -CCBL2 56267 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 89226604 89226604 Silent R6R -- -- -- -OAZ3 51686 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 150005900 150005900 Missense_Mutation P27S -HRNR 388697 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 150452666 150452666 Missense_Mutation L2688S low mutationassessor.org/?cm=msa&ty=f&p=HORN_HUMAN&rb=91&re=2799&var=L2688S -TTC24 164118 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 154819467 154819467 Missense_Mutation G27E mutationassessor.org/?cm=msa&ty=f&p=TTC24_HUMAN&rb=306&re=352&var=G307E -VANGL2 57216 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 158655985 158655985 Silent T254T -- -- -- -ASTN1 460 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 175184979 175184979 Silent D673D -- -- -- -FAM5C 339479 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 188334737 188334737 Silent D445D -- -- -- -G0S2 50486 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 207915844 207915844 Silent A64A -- -- -- -RD3 343035 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown LOH Illumina GAIIx chr1 209719152 209719152 Missense_Mutation P146L low mutationassessor.org/?cm=msa&ty=f&p=RD3_HUMAN&rb=4&re=194&var=P146L -KCNK2 3776 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 213412146 213412146 Missense_Mutation A274S mutationassessor.org/?cm=msa&ty=f&p=KCNK2_HUMAN&rb=233&re=313&var=A274S -NLRP3 114548 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 245674681 245674681 Silent G982G -- -- -- -CALML5 51806 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 5531064 5531064 Missense_Mutation P113L mutationassessor.org/?cm=msa&ty=f&p=CALL5_HUMAN&rb=78&re=113&var=P113L mutationassessor.org/pdb.php?prot=CALL5_HUMAN&from=78&to=113&var=P113L -GDF10 2662 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 48048882 48048882 Missense_Mutation R337H low mutationassessor.org/?cm=msa&ty=f&p=BMP3B_HUMAN&rb=240&re=372&var=R337H -BICC1 80114 broad.mit.edu TCGA-AA-3664-01 Unknown valid Wildtype Illumina GAIIx chr10 59943055 59943055 Missense_Mutation E49G low mutationassessor.org/?cm=msa&ty=f&p=BICC1_HUMAN&rb=1&re=200&var=E49G -STOX1 219736 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Wildtype Illumina GAIIx chr10 70315066 70315066 Missense_Mutation R503Q mutationassessor.org/?cm=msa&ty=f&p=STOX1_HUMAN&rb=391&re=590&var=R503Q -DLG5 9231 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 79246430 79246430 Nonsense_Mutation Q1304* -- -- -- -KIF20B 9585 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 91488328 91488328 Silent E1210E -- -- -- -DOCK1 1793 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 129073144 129073144 Missense_Mutation H1282R low mutationassessor.org/?cm=msa&ty=f&p=DOCK1_HUMAN&rb=1111&re=1616&var=H1282R mutationassessor.org/pdb.php?prot=DOCK1_HUMAN&from=1111&to=1616&var=H1282R -SMPD1 6609 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 6369742 6369742 Intron R291S low mutationassessor.org/?cm=msa&ty=f&p=ASM_HUMAN&rb=199&re=461&var=R289S -OR10AG1 282770 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr11 55492179 55492179 Missense_Mutation R113C high mutationassessor.org/?cm=msa&ty=f&p=O10AG_HUMAN&rb=32&re=281&var=R113C mutationassessor.org/pdb.php?prot=O10AG_HUMAN&from=32&to=281&var=R113C -PRG2 5553 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 56913314 56913314 Missense_Mutation E37D mutationassessor.org/?cm=msa&ty=f&p=PRG2_HUMAN&rb=1&re=79&var=E37D -SLC43A1 8501 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 57024895 57024895 Missense_Mutation P133L low mutationassessor.org/?cm=msa&ty=f&p=LAT3_HUMAN&rb=70&re=493&var=P133L -TMEM216 51259 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr11 60921958 60921958 Nonsense_Mutation G61G -- -- -- -ACTN3 89 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Somatic Illumina GAIIx chr11 66075660 66075660 Missense_Mutation S116R medium mutationassessor.org/?cm=msa&ty=f&p=ACTN3_HUMAN&rb=46&re=149&var=S116R mutationassessor.org/pdb.php?prot=ACTN3_HUMAN&from=46&to=149&var=S116R -NOX4 50507 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 88712884 88712884 Missense_Mutation N481D low mutationassessor.org/?cm=msa&ty=f&p=NOX4_HUMAN&rb=423&re=518&var=N481D -ATM 472 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 107719197 107719197 Nonsense_Mutation W2769* -- -- -- -OR6M1 390261 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 123181892 123181892 Missense_Mutation D126N neutral mutationassessor.org/?cm=msa&ty=f&p=OR6M1_HUMAN&rb=39&re=287&var=D126N mutationassessor.org/pdb.php?prot=OR6M1_HUMAN&from=39&to=287&var=D126N -FAM118B 79607 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 125629514 125629514 Silent N224N -- -- -- -GALNT8 26290 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 4744900 4744900 Missense_Mutation A563V neutral mutationassessor.org/?cm=msa&ty=f&p=GALT8_HUMAN&rb=496&re=622&var=A563V -VWF 7450 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 5965012 5965012 Silent T2293T -- -- -- -CLEC7A 64581 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Germline Illumina GAIIx chr12 10162443 10162443 Missense_Mutation T209A neutral mutationassessor.org/?cm=msa&ty=f&p=CLC7A_HUMAN&rb=137&re=243&var=T209A mutationassessor.org/pdb.php?prot=CLC7A_HUMAN&from=137&to=243&var=T209A -TAS2R10 50839 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 10869904 10869904 Missense_Mutation G78S medium mutationassessor.org/?cm=msa&ty=f&p=T2R10_HUMAN&rb=1&re=296&var=G78S -GPR19 2842 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 12706312 12706312 Nonsense_Mutation L113P high mutationassessor.org/?cm=msa&ty=f&p=GPR19_HUMAN&rb=82&re=330&var=L113P mutationassessor.org/pdb.php?prot=GPR19_HUMAN&from=82&to=330&var=L113P -SLC38A2 54407 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Somatic Illumina GAIIx chr12 45042571 45042571 Missense_Mutation T433A low mutationassessor.org/?cm=msa&ty=f&p=S38A2_HUMAN&rb=69&re=495&var=T433A -KRT80 144501 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 50871906 50871906 Silent C16C -- -- -- -SP1 6667 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr12 52063536 52063536 Missense_Mutation A513V low mutationassessor.org/?cm=msa&ty=f&p=SP1_HUMAN&rb=401&re=600&var=A513V -GPR84 53831 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 53043742 53043742 Missense_Mutation R54Q low mutationassessor.org/?cm=msa&ty=f&p=GPR84_HUMAN&rb=37&re=370&var=R54Q mutationassessor.org/pdb.php?prot=GPR84_HUMAN&from=37&to=370&var=R54Q -OR6C76 390326 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 54107010 54107010 Missense_Mutation S236P high mutationassessor.org/?cm=msa&ty=f&p=O6C76_HUMAN&rb=39&re=287&var=S236P -MSRB3 foo broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 63988657 63988657 Missense_Mutation T11S low mutationassessor.org/?cm=msa&ty=f&p=MSRB3_HUMAN&rb=1&re=39&var=T11S -C12orf63 374467 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 95674368 95674368 Silent G1039G -- -- -- -DTX1 1840 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 111999661 111999661 Silent P103P -- -- -- -CLIP1 6249 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 121387222 121387222 Silent Q815Q -- -- -- -DNAH10 196385 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 122969231 122969231 Missense_Mutation R3645Q mutationassessor.org/?cm=msa&ty=f&p=DYH10_HUMAN&rb=3590&re=3756&var=R3645Q -TUBA3C 7278 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr13 18650431 18650431 Silent I110I -- -- -- -POSTN 10631 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr13 37062595 37062595 Missense_Mutation A119T medium mutationassessor.org/?cm=msa&ty=f&p=POSTN_HUMAN&rb=109&re=232&var=A119T mutationassessor.org/pdb.php?prot=POSTN_HUMAN&from=109&to=232&var=A119T -NHLRC3 387921 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr13 38519992 38519992 Missense_Mutation A325P low mutationassessor.org/?cm=msa&ty=f&p=NHLC3_HUMAN&rb=241&re=347&var=A325P -UTP14C 9724 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr13 51501877 51501877 Silent A312A -- -- -- -TBC1D4 9882 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr13 74834235 74834235 Silent R336R -- -- -- -OR4M1 441670 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 19318932 19318932 Missense_Mutation G204V medium mutationassessor.org/?cm=msa&ty=f&p=OR4M1_HUMAN&rb=41&re=289&var=G204V -HEATR5A 25938 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 30926191 30926191 Missense_Mutation R66C low mutationassessor.org/?cm=msa&ty=f&p=HTR5A_HUMAN&rb=243&re=791&var=R353C -INSM2 84684 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 35074753 35074753 Missense_Mutation G515V low mutationassessor.org/?cm=msa&ty=f&p=INSM2_HUMAN&rb=401&re=566&var=G515V -SPTLC2 9517 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 77048441 77048441 Missense_Mutation R543L mutationassessor.org/?cm=msa&ty=f&p=SPTC2_HUMAN&rb=529&re=562&var=R543L -C14orf102 55051 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 89826682 89826682 Missense_Mutation Q622R low mutationassessor.org/?cm=msa&ty=f&p=CN102_HUMAN&rb=545&re=744&var=Q622R -COX8C 341947 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 92883440 92883440 Missense_Mutation A25T -RTL1 388015 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 100417938 100417938 Missense_Mutation V981I low mutationassessor.org/?cm=msa&ty=f&p=RTL1_HUMAN&rb=934&re=1133&var=V982I -AHNAK2 113146 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr14 104483308 104483308 Silent A3175A -- -- -- -MAGEL2 54551 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr15 21441891 21441891 Missense_Mutation G698R mutationassessor.org/?cm=msa&ty=f&p=Q2M1Q7_HUMAN&rb=1&re=200&var=G40R -SCG3 29106 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr15 49762877 49762877 Silent I117I -- -- -- -UNC13C 440279 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr15 52095297 52095297 Missense_Mutation R969C mutationassessor.org/?cm=msa&ty=f&p=UN13C_HUMAN&rb=801&re=1000&var=R969C -NTRK3 4916 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr15 86479593 86479593 Missense_Mutation R316H mutationassessor.org/?cm=msa&ty=f&p=NTRK3_HUMAN&rb=309&re=382&var=R316H mutationassessor.org/pdb.php?prot=NTRK3_HUMAN&from=309&to=382&var=R316H -LASS3 204219 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr15 98842359 98842359 Missense_Mutation T109M mutationassessor.org/?cm=msa&ty=f&p=LASS3_HUMAN&rb=71&re=126&var=T109M mutationassessor.org/pdb.php?prot=LASS3_HUMAN&from=71&to=126&var=T109M -SBK1 388228 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 28239033 28239033 Missense_Mutation R189C low mutationassessor.org/?cm=msa&ty=f&p=SBK1_HUMAN&rb=53&re=315&var=R189C mutationassessor.org/pdb.php?prot=SBK1_HUMAN&from=53&to=315&var=R189C -ZNF423 23090 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 48227850 48227850 Missense_Mutation R905Q low mutationassessor.org/?cm=msa&ty=f&p=ZN423_HUMAN&rb=761&re=960&var=R905Q mutationassessor.org/pdb.php?prot=ZN423_HUMAN&from=761&to=960&var=R905Q -GPR97 222487 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 56271941 56271941 Silent T264T -- -- -- -CDH8 1006 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 60409002 60409002 Missense_Mutation E387Q high mutationassessor.org/?cm=msa&ty=f&p=CADH8_HUMAN&rb=277&re=391&var=E387Q -CDH8 1006 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 60412422 60412422 Missense_Mutation S311L low mutationassessor.org/?cm=msa&ty=f&p=CADH8_HUMAN&rb=281&re=383&var=S311L mutationassessor.org/pdb.php?prot=CADH8_HUMAN&from=281&to=383&var=S311L -KCTD19 146212 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 65883102 65883102 Silent T786T -- -- -- -COX4I1 1327 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 84396941 84396941 Missense_Mutation A115T medium mutationassessor.org/?cm=msa&ty=f&p=COX41_HUMAN&rb=26&re=169&var=A115T mutationassessor.org/pdb.php?prot=COX41_HUMAN&from=26&to=169&var=A115T -ANKRD11 29123 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr16 87874034 87874034 Silent P2139P -- -- -- -C17orf97 400566 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr17 263542 263542 Missense_Mutation R198W low mutationassessor.org/?cm=msa&ty=f&p=CQ097_HUMAN&rb=1&re=200&var=R198W -PROCA1 147011 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr17 24054918 24054918 Missense_Mutation E266K low mutationassessor.org/?cm=msa&ty=f&p=PRCA1_HUMAN&rb=138&re=337&var=E294K -LPO 4025 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr17 53698597 53698597 Missense_Mutation R535H medium mutationassessor.org/?cm=msa&ty=f&p=PERL_HUMAN&rb=138&re=684&var=R535H mutationassessor.org/pdb.php?prot=PERL_HUMAN&from=138&to=684&var=R535H -RAD51C 5889 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr17 54156429 54156429 Missense_Mutation R312W high mutationassessor.org/?cm=msa&ty=f&p=RA51C_HUMAN&rb=78&re=350&var=R312W mutationassessor.org/pdb.php?prot=RA51C_HUMAN&from=78&to=350&var=R312W -KCNH6 81033 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr17 58966962 58966962 Silent I434I -- -- -- -SDK2 54549 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr17 68926986 68926986 Silent S700S -- -- -- -PPP4R1 9989 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr18 9539240 9539240 Nonsense_Mutation R882* -- -- -- -RFX2 5990 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 5991251 5991251 Nonsense_Mutation R88* -- -- -- -RAB11B 9230 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 8370842 8370842 Missense_Mutation V46M high mutationassessor.org/?cm=msa&ty=f&p=RB11B_HUMAN&rb=13&re=174&var=V46M mutationassessor.org/pdb.php?prot=RB11B_HUMAN&from=13&to=174&var=V46M -COL5A3 50509 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 9952774 9952774 Missense_Mutation R832Q medium mutationassessor.org/?cm=msa&ty=f&p=CO5A3_HUMAN&rb=801&re=1000&var=R832Q mutationassessor.org/pdb.php?prot=CO5A3_HUMAN&from=801&to=1000&var=R832Q -SLC44A2 57153 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 10603577 10603577 Silent L220L -- -- -- -ZNF682 91120 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 19979011 19979011 Silent L100L -- -- -- -ZNF536 9745 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 35626761 35626761 Missense_Mutation T151M high mutationassessor.org/?cm=msa&ty=f&p=ZN536_HUMAN&rb=1&re=200&var=T151M mutationassessor.org/pdb.php?prot=ZN536_HUMAN&from=1&to=200&var=T151M -CCDC123 84902 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 38064667 38064667 Nonsense_Mutation Y686* -- -- -- -SLC7A10 56301 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 38395621 38395621 Missense_Mutation R162W medium mutationassessor.org/?cm=msa&ty=f&p=AAA1_HUMAN&rb=45&re=462&var=R162W mutationassessor.org/pdb.php?prot=AAA1_HUMAN&from=45&to=462&var=R162W -NPHS1 4868 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 41030847 41030847 Missense_Mutation T459N low mutationassessor.org/?cm=msa&ty=f&p=NPHN_HUMAN&rb=444&re=538&var=T459N mutationassessor.org/pdb.php?prot=NPHN_HUMAN&from=444&to=538&var=T459N -DHX34 9704 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 52568703 52568703 Silent R670R -- -- -- -HAS1 3036 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 56911364 56911364 Missense_Mutation R340W high mutationassessor.org/?cm=msa&ty=f&p=HAS1_HUMAN&rb=223&re=389&var=R340W -LAIR1 3903 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 59558713 59558713 Silent T280T -- -- -- -ZFP28 140612 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 61753285 61753285 Missense_Mutation R242H mutationassessor.org/?cm=msa&ty=f&p=ZFP28_HUMAN&rb=232&re=268&var=R242H -ZNF135 7694 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr19 63264769 63264769 Missense_Mutation T27A medium mutationassessor.org/?cm=msa&ty=f&p=ZN135_HUMAN&rb=14&re=54&var=T15A mutationassessor.org/pdb.php?prot=ZN135_HUMAN&from=14&to=54&var=T15A -CRIM1 51232 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr2 36560219 36560219 Missense_Mutation R417Q low mutationassessor.org/?cm=msa&ty=f&p=CRIM1_HUMAN&rb=403&re=456&var=R417Q -ATP6V1B1 525 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr2 71043881 71043881 Missense_Mutation R331W high mutationassessor.org/?cm=msa&ty=f&p=VATB1_HUMAN&rb=166&re=393&var=R331W mutationassessor.org/pdb.php?prot=VATB1_HUMAN&from=166&to=393&var=R331W diff --git a/core/src/test/resources/data_mutations_extended_continued.txt b/core/src/test/resources/data_mutations_extended_continued.txt deleted file mode 100644 index a49aed95c23..00000000000 --- a/core/src/test/resources/data_mutations_extended_continued.txt +++ /dev/null @@ -1,4 +0,0 @@ -#sequenced_samples: TCGA-AA-3665-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB -GPR19 2842 broad.mit.edu TCGA-AA-3665-01 Unknown valid Germline Illumina GAIIx chr12 12706312 12706312 Nonsense_Mutation L113P high mutationassessor.org/?cm=msa&ty=f&p=GPR19_HUMAN&rb=82&re=330&var=L113P mutationassessor.org/pdb.php?prot=GPR19_HUMAN&from=82&to=330&var=L113P -SP1 6667 broad.mit.edu TCGA-AA-3665-01 Unknown valid Somatic Illumina GAIIx chr12 52063536 52063536 Missense_Mutation A513V low mutationassessor.org/?cm=msa&ty=f&p=SP1_HUMAN&rb=401&re=600&var=A513V diff --git a/core/src/test/resources/data_mutations_extended_duplicate_events.txt b/core/src/test/resources/data_mutations_extended_duplicate_events.txt deleted file mode 100644 index 5c5c8705d67..00000000000 --- a/core/src/test/resources/data_mutations_extended_duplicate_events.txt +++ /dev/null @@ -1,4 +0,0 @@ -#sequenced_samples: TCGA-AA-3664-01 TCGA-AA-3665-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB -NLRP3 114548 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 245674681 245674681 Missense_Mutation G982G -- -- -- -NLRP3 114548 broad.mit.edu TCGA-AA-3665-01 Unknown valid Unknown Illumina GAIIx chr1 245674681 245674681 Missense_Mutation G982G -- -- -- diff --git a/core/src/test/resources/data_mutations_extended_json_annotation.txt b/core/src/test/resources/data_mutations_extended_json_annotation.txt deleted file mode 100644 index 2e1aab6b224..00000000000 --- a/core/src/test/resources/data_mutations_extended_json_annotation.txt +++ /dev/null @@ -1,52 +0,0 @@ -#sequenced_samples: TCGA-AA-3664-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB NAMESPACE1.HEADER1 NAMESPACE1.HEADER2 NAMESPACE2.HEADER1 INVALID_NAMESPACE:HEADER1 INVALID_NAMESPACE.HEADER1 ASCN.ASCN_INTEGER_COPY_NUMBER ASCN.ASCN_METHOD ASCN.CCF_EXPECTED_COPIES_UPPER ASCN.CCF_EXPECTED_COPIES ASCN.CLONAL ASCN.MINOR_COPY_NUMBER ASCN.EXPECTED_ALT_COPIES ASCN.TOTAL_COPY_NUMBER -HSPG2 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N Likely 10.0 Yes Yes Yes 5 FACETS 15 5 FALSE 0 2 7 -CSMD2 -114784 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I Unknown 5.7 No No No 2 FACETS 8 2 TRUE 1 1 3 -CLSPN 63967 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L True 2.4 NA NA NA 6 FACETS 12 6 TRUE 2 3 9 -RSPO1 284654 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 37867916 37867916 Missense_Mutation R2Q low mutationassessor.org/?cm=msa&ty=f&p=RSPO1_HUMAN&rb=1&re=150&var=R2Q NA 2.5 Unknown Unknown Unknown 0 FACETS 0 0 TRUE 1 4 4 -SMAP2 64744 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 40646957 40646957 Missense_Mutation A95T medium mutationassessor.org/?cm=msa&ty=f&p=SMAP2_HUMAN&rb=13&re=127&var=A95T mutationassessor.org/pdb.php?prot=SMAP2_HUMAN&from=13&to=127&var=A95T False 1.4 No No No 1 FACETS 4 1 TRUE 0 2 3 -HPDL 84842 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 45565857 45565857 Silent S150S -- -- -- False 4.0 NA NA NA 4 FACETS 8 4 TRUE 2 2 6 -ZYG11B 79699 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 53009534 53009534 Missense_Mutation E151K low mutationassessor.org/?cm=msa&ty=f&p=ZY11B_HUMAN&rb=6&re=304&var=E151K Likely 0.9 Unknown Unknown Unknown 0 FACETS 0 0 TRUE 1 2 2 -CCBL2 56267 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 89226604 89226604 Silent R6R -- -- -- Unknown 6.5 No No No 8 FACETS 32 8 TRUE 0 3 11 -OAZ3 51686 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 150005900 150005900 Missense_Mutation P27S True 0.4 Yes Yes Yes 6 FACETS 12 6 TRUE 2 4 10 -HRNR 388697 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 150452666 150452666 Missense_Mutation L2688S low mutationassessor.org/?cm=msa&ty=f&p=HORN_HUMAN&rb=91&re=2799&var=L2688S NA 3.6 Yes Yes Yes 5 FACETS 15 5 FALSE 1 1 6 -TTC24 164118 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 154819467 154819467 Missense_Mutation G27E mutationassessor.org/?cm=msa&ty=f&p=TTC24_HUMAN&rb=306&re=352&var=G307E False 7.3 Yes Yes Yes 3 FACETS 12 3 TRUE 0 1 4 -VANGL2 57216 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 158655985 158655985 Silent T254T -- -- -- False 1.8 No No No 7 FACETS 14 7 TRUE 2 5 12 -ASTN1 460 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 175184979 175184979 Silent D673D -- -- -- Likely 5.7 NA NA NA 8 FACETS 24 8 TRUE 1 3 11 -FAM5C 339479 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 188334737 188334737 Silent D445D -- -- -- Unknown 1.2 Unknown Unknown Unknown 6 FACETS 24 6 TRUE 0 0 6 -G0S2 50486 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 207915844 207915844 Silent A64A -- -- -- True 1.0 No No No 3 FACETS 6 3 TRUE 2 3 6 -RD3 343035 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown LOH Illumina GAIIx chr1 209719152 209719152 Missense_Mutation P146L low mutationassessor.org/?cm=msa&ty=f&p=RD3_HUMAN&rb=4&re=194&var=P146L NA 3.6 NA NA NA 5 FACETS 15 5 FALSE 1 4 9 -KCNK2 3776 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 213412146 213412146 Missense_Mutation A274S mutationassessor.org/?cm=msa&ty=f&p=KCNK2_HUMAN&rb=233&re=313&var=A274S False 7.2 Unknown Unknown Unknown 6 FACETS 24 6 TRUE 0 2 8 -NLRP3 114548 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr1 245674681 245674681 Silent G982G -- -- -- False 0.6 No No No 5 FACETS 10 5 TRUE 2 2 7 -CALML5 51806 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 5531064 5531064 Missense_Mutation P113L mutationassessor.org/?cm=msa&ty=f&p=CALL5_HUMAN&rb=78&re=113&var=P113L mutationassessor.org/pdb.php?prot=CALL5_HUMAN&from=78&to=113&var=P113L Likely 8.3 Yes Yes Yes 5 FACETS 15 5 FALSE 1 2 7 -GDF10 2662 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 48048882 48048882 Missense_Mutation R337H low mutationassessor.org/?cm=msa&ty=f&p=BMP3B_HUMAN&rb=240&re=372&var=R337H Unknown 2.1 Yes Yes Yes 2 FACETS 8 2 TRUE 0 3 5 -BICC1 80114 broad.mit.edu TCGA-AA-3664-01 Unknown valid Wildtype Illumina GAIIx chr10 59943055 59943055 Missense_Mutation E49G low mutationassessor.org/?cm=msa&ty=f&p=BICC1_HUMAN&rb=1&re=200&var=E49G True 7.7 Yes Yes Yes 0 FACETS 0 0 TRUE 2 4 4 -STOX1 219736 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Wildtype Illumina GAIIx chr10 70315066 70315066 Missense_Mutation R503Q mutationassessor.org/?cm=msa&ty=f&p=STOX1_HUMAN&rb=391&re=590&var=R503Q NA 5.9 No No No 4 FACETS 12 4 TRUE 1 1 5 -DLG5 9231 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 79246430 79246430 Nonsense_Mutation Q1304* -- -- -- False 0.4 NA NA NA 8 FACETS 32 8 TRUE 0 1 9 -KIF20B 9585 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 91488328 91488328 Silent E1210E -- -- -- False 3.6 Unknown Unknown Unknown 5 FACETS 10 5 TRUE 1 4 9 -DOCK1 1793 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr10 129073144 129073144 Missense_Mutation H1282R low mutationassessor.org/?cm=msa&ty=f&p=DOCK1_HUMAN&rb=1111&re=1616&var=H1282R mutationassessor.org/pdb.php?prot=DOCK1_HUMAN&from=1111&to=1616&var=H1282R Likely 8.0 No No No 3 FACETS 9 3 FALSE 1 3 6 -SMPD1 6609 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 6369742 6369742 Intron R291S low mutationassessor.org/?cm=msa&ty=f&p=ASM_HUMAN&rb=199&re=461&var=R289S Unknown 6.7 NA NA NA 1 FACETS 4 1 TRUE 0 0 1 -OR10AG1 282770 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr11 55492179 55492179 Missense_Mutation R113C high mutationassessor.org/?cm=msa&ty=f&p=O10AG_HUMAN&rb=32&re=281&var=R113C mutationassessor.org/pdb.php?prot=O10AG_HUMAN&from=32&to=281&var=R113C True 1.1 Unknown Unknown Unknown 6 FACETS 12 6 TRUE 1 2 8 -PRG2 5553 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 56913314 56913314 Missense_Mutation E37D mutationassessor.org/?cm=msa&ty=f&p=PRG2_HUMAN&rb=1&re=79&var=E37D NA 3.1 No No No 1 FACETS 3 1 FALSE 0 3 4 -SLC43A1 8501 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 57024895 57024895 Missense_Mutation P133L low mutationassessor.org/?cm=msa&ty=f&p=LAT3_HUMAN&rb=70&re=493&var=P133L False 1.5 Yes Yes Yes 2 FACETS 8 2 TRUE 1 3 5 -TMEM216 51259 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr11 60921958 60921958 Nonsense_Mutation G61G -- -- -- False 3.0 Yes Yes Yes 3 FACETS 6 3 TRUE 0 0 3 -ACTN3 89 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Somatic Illumina GAIIx chr11 66075660 66075660 Missense_Mutation S116R medium mutationassessor.org/?cm=msa&ty=f&p=ACTN3_HUMAN&rb=46&re=149&var=S116R mutationassessor.org/pdb.php?prot=ACTN3_HUMAN&from=46&to=149&var=S116R Likely 4.1 Yes Yes Yes 2 FACETS 6 2 TRUE 2 3 5 -NOX4 50507 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 88712884 88712884 Missense_Mutation N481D low mutationassessor.org/?cm=msa&ty=f&p=NOX4_HUMAN&rb=423&re=518&var=N481D Unknown 2.0 No No No 5 FACETS 20 5 TRUE 2 5 10 -ATM 472 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 107719197 107719197 Nonsense_Mutation W2769* -- -- -- True 8.3 NA NA NA 5 FACETS 10 5 TRUE 2 4 9 -OR6M1 390261 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 123181892 123181892 Missense_Mutation D126N neutral mutationassessor.org/?cm=msa&ty=f&p=OR6M1_HUMAN&rb=39&re=287&var=D126N mutationassessor.org/pdb.php?prot=OR6M1_HUMAN&from=39&to=287&var=D126N NA 5.4 Unknown Unknown Unknown 8 FACETS 24 8 TRUE 2 2 10 -FAM118B 79607 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr11 125629514 125629514 Silent N224N -- -- -- False 1.4 No No No 9 FACETS 36 9 TRUE 1 2 11 -GALNT8 26290 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 4744900 4744900 Missense_Mutation A563V neutral mutationassessor.org/?cm=msa&ty=f&p=GALT8_HUMAN&rb=496&re=622&var=A563V False 8.1 NA NA NA 4 FACETS 8 4 TRUE 0 3 7 -VWF 7450 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 5965012 5965012 Silent T2293T -- -- -- Likely 5.6 Unknown Unknown Unknown 3 FACETS 9 3 FALSE 1 3 6 -CLEC7A 64581 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Germline Illumina GAIIx chr12 10162443 10162443 Missense_Mutation T209A neutral mutationassessor.org/?cm=msa&ty=f&p=CLC7A_HUMAN&rb=137&re=243&var=T209A mutationassessor.org/pdb.php?prot=CLC7A_HUMAN&from=137&to=243&var=T209A Unknown 9.5 No No No 2 FACETS 8 2 TRUE 2 2 4 -TAS2R10 50839 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 10869904 10869904 Missense_Mutation G78S medium mutationassessor.org/?cm=msa&ty=f&p=T2R10_HUMAN&rb=1&re=296&var=G78S True 3.6 Yes Yes Yes 1 FACETS 2 1 TRUE 0 1 2 -GPR19 2842 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 12706312 12706312 Nonsense_Mutation L113P high mutationassessor.org/?cm=msa&ty=f&p=GPR19_HUMAN&rb=82&re=330&var=L113P mutationassessor.org/pdb.php?prot=GPR19_HUMAN&from=82&to=330&var=L113P NA 1.6 Yes Yes Yes 0 FACETS 0 0 TRUE 1 4 4 -SLC38A2 54407 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Somatic Illumina GAIIx chr12 45042571 45042571 Missense_Mutation T433A low mutationassessor.org/?cm=msa&ty=f&p=S38A2_HUMAN&rb=69&re=495&var=T433A Likely 0.8 Yes Yes Yes 2 FACETS 8 2 TRUE 2 4 6 -KRT80 144501 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 50871906 50871906 Silent C16C -- -- -- Unknown 4.1 No No No 5 FACETS 10 5 TRUE 0 0 5 -SP1 6667 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr12 52063536 52063536 Missense_Mutation A513V low mutationassessor.org/?cm=msa&ty=f&p=SP1_HUMAN&rb=401&re=600&var=A513V True 8.2 NA NA NA 8 FACETS 24 8 TRUE 1 2 10 -GPR84 53831 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 53043742 53043742 Missense_Mutation R54Q low mutationassessor.org/?cm=msa&ty=f&p=GPR84_HUMAN&rb=37&re=370&var=R54Q mutationassessor.org/pdb.php?prot=GPR84_HUMAN&from=37&to=370&var=R54Q NA 4.7 Unknown Unknown Unknown 7 FACETS 28 7 TRUE 0 3 10 -OR6C76 390326 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 54107010 54107010 Missense_Mutation S236P high mutationassessor.org/?cm=msa&ty=f&p=O6C76_HUMAN&rb=39&re=287&var=S236P False 4.6 No No No 1 FACETS 2 1 TRUE 1 3 4 -MSRB3 foo broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 63988657 63988657 Missense_Mutation T11S low mutationassessor.org/?cm=msa&ty=f&p=MSRB3_HUMAN&rb=1&re=39&var=T11S False 5.4 NA NA NA 2 FACETS 6 2 TRUE 0 0 2 -C12orf63 374467 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 95674368 95674368 Silent G1039G -- -- -- Likely 4.8 Unknown Unknown Unknown 3 FACETS 12 3 TRUE 0 1 4 -DTX1 1840 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 111999661 111999661 Silent P103P -- -- -- Unknown 2.5 No No No 8 FACETS 16 8 TRUE 0 3 11 -CLIP1 6249 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 121387222 121387222 Silent Q815Q -- -- -- True 0.6 Yes Yes Yes 1 FACETS 3 1 FALSE 0 2 3 -DNAH10 196385 broad.mit.edu TCGA-AA-3664-01 Unknown valid Unknown Illumina GAIIx chr12 122969231 122969231 Missense_Mutation R3645Q mutationassessor.org/?cm=msa&ty=f&p=DYH10_HUMAN&rb=3590&re=3756&var=R3645Q NA 7.5 Yes Yes Yes 5 FACETS 15 5 FALSE 1 1 6 diff --git a/core/src/test/resources/data_mutations_extended_without_namespaces.txt b/core/src/test/resources/data_mutations_extended_without_namespaces.txt deleted file mode 100644 index 2e4dcee256f..00000000000 --- a/core/src/test/resources/data_mutations_extended_without_namespaces.txt +++ /dev/null @@ -1,3 +0,0 @@ -#sequenced_samples: TCGA-AA-3664-01 TCGA-AA-3665-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB foo -NLRP3 114548 broad.mit.edu TCGA-AA-3665-01 Unknown valid Unknown Illumina GAIIx chr1 245674681 245674681 Missense_Mutation G982G -- -- -- diff --git a/core/src/test/resources/data_mutations_oncotated.txt b/core/src/test/resources/data_mutations_oncotated.txt deleted file mode 100644 index 55c271d937f..00000000000 --- a/core/src/test/resources/data_mutations_oncotated.txt +++ /dev/null @@ -1,22 +0,0 @@ -#sequenced_samples: TCGA-XX-0800-01 TCGA-XX-0900-01 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU MA:variant MA:GE.rank MA:CNA MA:OV.variant.samples MA:OV.gene.samples MA:mapping.issue MA:FImpact MA:FI.score MA:Func.region MA:bindsite.protein MA:bindsite.DNA/RNA MA:bindsite.sm.mol MA:CancerGenes MA:TS MA:OG MA:COSMIC.mutations MA:COSMIC.cancers MA:Uniprot.regions MA:Pfam.domain MA:link.var MA:link.MSA MA:link.PDB ONCOTATOR_VARIANT_CLASSIFICATION ONCOTATOR_PROTEIN_CHANGE ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_GENE_SYMBOL -FAM90A1 55138 genome.wustl.edu 37 12 8374781 8374782 + In_Frame_Ins INS - - ACG TCGA-XX-0800-01 TCGA-XX-0800-01 - - - - Unknown Unknown Somatic Capture Illumina GAIIx 12 8266048 8266049 - ACG INS FAM90A1 NM_018088 human genbank 54_36p -1 validated in_frame_ins c.1032_1031 p.345in_frame_insV 0.000:0.001 NULL NULL - no_errors In_Frame_Ins p.344_345insV rs138330958;rs149653769 FAM90A1 -TXNIP 10628 genome.wustl.edu 37 1 145440463 145440463 + Missense_Mutation SNP G G A TCGA-XX-0800-01 TCGA-XX-0800-01 G G G G Unknown Unknown Somatic Capture Illumina GAIIx 1 144151820 144151820 G A SNP TXNIP NM_006472 human genbank 54_36p +1 validated missense c.769 p.V257I 1.000 superfamily_Ig_E-set,HMMPfam_Arrestin_C superfamily_Ig_E-set,HMMPfam_Arrestin_N,HMMPfam_Arrestin_C - no_errors 1,144151820,G,A 1 1 neutral 0.235 PF02752 // Arrestin (or S-antigen), C-terminal domain // 174 // 300 http://getma.org/v1/?cm=var&var=1,144151820,G,A&fts=all http://getma.org/v1/?cm=msa&ty=f&p=TXNIP_HUMAN&rb=174&re=300&var=V257I Missense_Mutation p.V257I TXNIP -SEL1L2 80343 genome.wustl.edu 37 20 13858170 13858170 + Missense_Mutation SNP C C T TCGA-XX-0800-01 TCGA-XX-0800-01 C C C C Unknown Unknown Somatic Capture Illumina GAIIx 20 13806170 13806170 C T SNP SEL1L2 NM_025229 human genbank 54_36p -1 validated missense c.1022 p.G341E 1.000 superfamily_SSF81901,HMMPfam_Sel1,HMMSmart_SEL1 HMMSmart_SEL1,superfamily_SSF81901,HMMPfam_Sel1 - no_errors 20,13806170,C,T 1 1 medium 2.165 REPEAT // Sel1-like 6. /// TOPO_DOM // Extracellular (Potential). PF08238 // Sel1 repeat // 334 // 370 http://getma.org/v1/?cm=var&var=20,13806170,C,T&fts=all http://getma.org/v1/?cm=msa&ty=f&p=SE1L2_HUMAN&rb=334&re=370&var=G341E Missense_Mutation p.G341E SEL1L2 -DROSHA 29102 genome.wustl.edu 37 5 31409392 31409392 + Missense_Mutation SNP T T A TCGA-XX-0900-01 TCGA-XX-0900-01 T T T T Unknown Valid Somatic WGS Illumina_Capture Illumina GAIIx 5 31445149 31445149 T A SNP RNASEN NM_013235 human genbank 54_36p -1 validated missense c.3715 p.T1239S 1.000 HMMSmart_SM00535,superfamily_RNase III catalytic domain-like (Pfam 00636) HMMPfam_Ribonuclease_3,HMMSmart_SM00535,PatternScan_RNASE_3_1,superfamily_RNase III catalytic domain-like (Pfam 00636),HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like - no_errors 5,31445149,T,A 1 1 neutral -0.18 REGION // Necessary for interaction with DGCR8 and pri-miRNA processing activity. http://getma.org/v1/?cm=var&var=5,31445149,T,A&fts=all http://getma.org/v1/?cm=msa&ty=f&p=RNC_HUMAN&rb=1204&re=1290&var=T1239S Missense_Mutation p.T1239S RNASEN -TRIO 7204 genome.wustl.edu 37 5 14287024 14287024 + Missense_Mutation SNP G G A TCGA-XX-0800-01 TCGA-XX-0800-01 G G G G Unknown Unknown Somatic Capture Illumina GAIIx 5 14340024 14340024 G A SNP TRIO NM_007118 human genbank 54_36p +1 validated missense c.392 p.R131H 1.000 superfamily_CRAL/TRIO domain,HMMSmart_SM00516 superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST - no_errors 5,14340024,G,A 1 1 medium 3.345 DOMAIN // CRAL-TRIO. http://getma.org/v1/?cm=var&var=5,14340024,G,A&fts=all http://getma.org/v1/?cm=msa&ty=f&p=TRIO_HUMAN&rb=65&re=210&var=R131H Missense_Mutation p.R131H TRIO -RAB25 57111 genome.wustl.edu 37 1 156035781 156035781 + Missense_Mutation SNP C C A TCGA-XX-0900-01 TCGA-XX-0900-01 C C C C Unknown Valid Somatic WGS Illumina_Capture Illumina GAIIx 1 154302405 154302405 C A SNP RAB25 NM_020387 human genbank 54_36p +1 provisional missense c.123 p.S41R 0.993 HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 - no_errors 1,154302405,C,A 1 1 medium 3.455 1 GSP GTP GNP GDP MOTIF // Effector region (By similarity). PF00071 // Ras family // 14 // 175 http://getma.org/v1/?cm=var&var=1,154302405,C,A&fts=all http://getma.org/v1/?cm=msa&ty=f&p=RAB25_HUMAN&rb=14&re=175&var=S41R http://getma.org/v1/pdb.php?prot=RAB25_HUMAN&from=14&to=175&var=S41R Missense_Mutation p.S41R RAB25 -CACNA1A 773 genome.wustl.edu 37 19 13370431 13370431 + Silent SNP C C T TCGA-XX-0900-01 TCGA-XX-0900-01 C C C C Unknown Valid Somatic WGS Illumina_Capture Illumina GAIIx 19 13231431 13231431 C T SNP CACNA1A ENST00000325084 human ensembl 54_36p -1 known silent c.4338 p.V1446 1.000 HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels - no_errors -LOC100132025 100132025 genome.wustl.edu 37 15 23404926 23404926 + Missense_Mutation SNP G G A TCGA-XX-0800-01 TCGA-XX-0800-01 G G G G Unknown Unknown Somatic Capture Illumina GAIIx 15 20956367 20956367 G A SNP LOC100132025 XM_001723658 human genbank 54_36p -1 model missense c.236 p.A79V 0.307 NULL NULL - no_errors 15,20956367,G,A 1 2 neutral 0 TOPO_DOM // Extracellular (Potential). PB193979 // // 1 // 122 http://getma.org/v1/?cm=var&var=15,20956367,G,A&fts=all http://getma.org/v1/?cm=msa&ty=f&p=YO011_HUMAN&rb=1&re=122&var=A79V 5'Flank -DNAH8 1769 genome.wustl.edu 37 6 38825487 38825487 + Missense_Mutation SNP A A C TCGA-XX-0800-01 TCGA-XX-0800-01 A A A A Unknown Unknown Somatic Capture Illumina GAIIx 6 38933465 38933465 A C SNP DNAH8 NM_001371 human genbank 54_36p +1 validated missense c.5276 p.H1759P 1.000 NULL PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors 6,38933465,A,C 1 2 high 3.895 http://getma.org/v1/?cm=var&var=6,38933465,A,C&fts=all http://getma.org/v1/?cm=msa&ty=f&p=DYH8_HUMAN&rb=1679&re=1807&var=H1759P Missense_Mutation p.H1759P DNAH8 -OR2W3 343171 genome.wustl.edu 37 1 248059353 248059355 + In_Frame_Del DEL CTC CTC - TCGA-XX-0800-01 TCGA-XX-0800-01 CTC CTC CTC CTC Unknown Unknown Somatic Capture Illumina GAIIx 1 246125976 246125978 CTC - DEL OR2W3 NM_001001957 human genbank 54_36p +1 provisional in_frame_del c.465_467 p.S156in_frame_del 0.000:0.001:0.003 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors In_Frame_Del p.S156del OR2W3 -GRIK5 2901 genome.wustl.edu 37 19 42558500 42558500 + Missense_Mutation SNP C C G TCGA-XX-0800-01 TCGA-XX-0800-01 C C C C Unknown Unknown Somatic Capture Illumina GAIIx 19 47250340 47250340 C G SNP GRIK5 NM_002088 human genbank 54_36p -1 reviewed missense c.1028 p.G343A 1.000 superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan - no_errors 19,47250340,C,G 1 1 medium 3.405 TOPO_DOM // Extracellular (Potential). PF01094 // Receptor family ligand binding region // 40 // 381 http://getma.org/v1/?cm=var&var=19,47250340,C,G&fts=all http://getma.org/v1/?cm=msa&ty=f&p=GRIK5_HUMAN&rb=40&re=381&var=G343A http://getma.org/v1/pdb.php?prot=GRIK5_HUMAN&from=40&to=381&var=G343A Missense_Mutation p.G343A GRIK5 -SLC34A2 10568 genome.wustl.edu 37 4 25677981 25677981 + Silent SNP C C T TCGA-XX-0800-01 TCGA-XX-0800-01 C C C C Unknown Unknown Somatic Capture Illumina GAIIx 4 25287079 25287079 C T SNP SLC34A2 NM_006424 human genbank 54_36p +1 validated silent c.1683 p.P561 0.868 NULL HMMPfam_Na_Pi_cotrans - no_errors -TMEM37 140738 genome.wustl.edu 37 2 120194651 120194652 + In_Frame_Ins INS - - GTGTGC TCGA-XX-0900-01 TCGA-XX-0800-01 - - - - Unknown Unknown Somatic Capture Illumina GAIIx 2 119911121 119911122 - GTGTGC INS TMEM37 NM_183240 human genbank 54_36p +1 validated in_frame_ins c.208_209 p.T70in_frame_insSVP 0.975:0.000 NULL NULL - no_errors In_Frame_Ins p.70_70T>SVP rs76360727;rs33980232 TMEM37 -MUC16 94025 genome.wustl.edu 37 19 9011375 9011375 + Missense_Mutation SNP C C G TCGA-XX-0800-01 TCGA-XX-0800-01 C C C C Unknown Unknown Somatic Capture Illumina GAIIx 19 8872375 8872375 C G SNP MUC16 NM_024690 human genbank 54_36p -1 validated missense c.38858 p.G12953A 0.002 superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA - no_errors 19,8872375,C,G 1 6 low 1.6 DOMAIN // SEA 6. /// TOPO_DOM // Extracellular (Potential). PF01390 // SEA domain // 12854 // 12966 http://getma.org/v1/?cm=var&var=19,8872375,C,G&fts=all http://getma.org/v1/?cm=msa&ty=f&p=MUC16_HUMAN&rb=12854&re=12966&var=G12955A http://getma.org/v1/pdb.php?prot=MUC16_HUMAN&from=12854&to=12966&var=G12955A Missense_Mutation p.G12953A MUC16 -EEF1A1 1915 genome.wustl.edu 37 6 74229728 74229728 + Missense_Mutation SNP T T C TCGA-XX-0800-01 TCGA-XX-0800-01 T T T T Unknown Unknown Somatic Capture Illumina GAIIx 6 74286449 74286449 T C SNP EEF1A1 NM_001402 human genbank 54_36p -1 reviewed missense c.22 p.I8V 1.000 HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors 6,74286449,T,C 1 1 medium 3.07 Cancer Cell Map Pathway :: EGFR1 /// Entrez Query :: Stability /// Entrez Query :: Tumor Supressor 1 PF00009 // Elongation factor Tu GTP binding domain // 5 // 238 http://getma.org/v1/?cm=var&var=6,74286449,T,C&fts=all http://getma.org/v1/?cm=msa&ty=f&p=EF1A3_HUMAN&rb=5&re=238&var=I8V http://getma.org/v1/pdb.php?prot=EF1A3_HUMAN&from=5&to=238&var=I8V Missense_Mutation p.I8V EEF1A1 -NOL6 65083 genome.wustl.edu 37 9 33466081 33466081 + Silent SNP C C T TCGA-XX-0800-01 TCGA-XX-0800-01 C C C C Unknown Unknown Somatic Capture Illumina GAIIx 9 33456081 33456081 C T SNP NOL6 NM_022917 human genbank 54_36p -1 reviewed silent c.2352 p.T784 0.951 HMMPfam_Nrap HMMPfam_Nrap - no_errors -TLN1 7094 genome.wustl.edu 37 9 35706030 35706030 + Missense_Mutation SNP G G C TCGA-XX-0800-01 TCGA-XX-0800-01 G G G G Unknown Unknown Somatic Capture Illumina GAIIx 9 35696030 35696030 G C SNP TLN1 NM_006289 human genbank 54_36p -1 reviewed missense c.5440 p.L1814V 1.000 NULL HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ - no_errors 9,35696030,G,C 1 1 low 1.045 Entrez Query :: Stability REGION // Interaction with SYNM. http://getma.org/v1/?cm=var&var=9,35696030,G,C&fts=all http://getma.org/v1/?cm=msa&ty=f&p=TLN1_HUMAN&rb=1758&re=1848&var=L1814V http://getma.org/v1/pdb.php?prot=TLN1_HUMAN&from=1758&to=1848&var=L1814V Missense_Mutation p.L1814V TLN1 -PLCE1 51196 genome.wustl.edu 37 10 95791516 95791516 + Missense_Mutation SNP T T C TCGA-XX-0800-01 TCGA-XX-0800-01 T T T T Unknown Unknown Somatic Capture Illumina GAIIx 10 95781506 95781506 T C SNP PLCE1 NM_016341 human genbank 54_36p +1 validated missense c.713 p.M238T 0.287 NULL HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand - no_errors 10,95781506,T,C 1 4 neutral 0.345 Cancer Cell Map Pathway :: Kit Receptor http://getma.org/v1/?cm=var&var=10,95781506,T,C&fts=all http://getma.org/v1/?cm=msa&ty=f&p=PLCE1_HUMAN&rb=201&re=400&var=M238T Missense_Mutation p.M238T PLCE1 -FLT3 2322 genome.wustl.edu 37 13 28608256 28608257 + In_Frame_Ins INS - - TCATATTCATATTCATATTCATAT TCGA-XX-0900-01 TCGA-XX-0900-01 - - Unknown Valid Somatic WGS Illumina_Capture Illumina GAIIx 13 27506256 27506257 - TCATATTCATATTCATATTCATAT INS FLT3 NM_004119.2 human genbank 54_36p -1 reviewed in_frame_ins c.1800_1799 p.600in_frame_insEYEYEYEY 0.998:1.000 superfamily_Kinase_like superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR - no_errors In_Frame_Ins p.599_600insEYEYEYEY p.D600_L601insFREYEYD(4)|p.E598_Y599ins14(3)|p.E598_Y599ins22(2)|p.D600_L601ins17(2)|p.Y599_D600ins12(2)|p.Y599_D600ins15(2)|p.Y599F(2)|p.E598_Y599ins20(1)|p.E598_Y599ins25(1)|p.Y599_D600ins20(1)|p.D600>EPAPQINSTGSSDNEYFYVDFREYEYDLT(1)|p.E598_Y599insE(1)|p.E598_Y599insWDFREYE(1)|p.Y599_D600insYVDFREYEY(1)|p.D600_L601insVDFREYEY(1)|p.Y599_D600>NEYFYVDFREYEY(1)|p.Y599_D600insFDFREYE(1)|p.Y599_D600insFREYEY(1)|p.E598_Y599insFYVDFREYE(1)|p.Y599_D600ins19(1)|p.Y599_D600insDFREYEY(1)|p.Y599_D600ins11(1)|p.E598_Y599ins17(1)|p.Y599_D600ins14(1)|p.E598_Y599insDFREYE(1)|p.E598_Y599insDYVDFREYE(1)|p.D600_L601ins28(1)|p.D600_L601ins20(1) FLT3 -CBL 867 genome.wustl.edu 37 11 119148880 119148880 + Missense_Mutation SNP A A G TCGA-XX-0900-01 TCGA-XX-0900-01 A A A A Unknown Valid Somatic WGS Illumina_Capture Illumina GAIIx 11 118654090 118654090 A G SNP CBL NM_005188 human genbank 54_36p +1 reviewed missense c.1100 p.Q367R 1.000 superfamily_SSF57850 HMMPfam_UBA,HMMSmart_RING,HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,HMMSmart_UBA,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF47473,superfamily_SSF55550,superfamily_SSF57850 - no_errors 11,118654090,A,G 1 1 medium 2.25 Cancer Cell Map Pathway :: EGFR1 /// Cancer Cell Map Pathway :: Kit Receptor /// Cancer Review :: Futreal et al 2004 /// Cancer Review :: Mitelman 2000 /// Entrez Query :: Oncogene /// Sanger CGC :: COSMIC /// Sanger CGC :: Translocation 1 p.E366_Q409del,p.Q367R,p.E366_K477del acute_myeloid_leukaemia,chronic_myelomonocytic_leukaemia,haematopoietic_neoplasm COMPBIAS // Asp/Glu-rich (acidic). /// HELIX // /// REGION // Linker. /// VARIANT // Q->P (in NSL; causes impaired CBL- mediated degradation of cell-surface receptors in a dominant-negative fashion). http://getma.org/v1/?cm=var&var=11,118654090,A,G&fts=all http://getma.org/v1/?cm=msa&ty=f&p=CBL_HUMAN&rb=350&re=380&var=Q367R http://getma.org/v1/pdb.php?prot=CBL_HUMAN&from=350&to=380&var=Q367R Missense_Mutation p.Q367R p.E366_Q409del(13)|p.Q367R(1)|p.E366_K477del(1) CBL diff --git a/core/src/test/resources/data_mutations_swissprotaccession.maf b/core/src/test/resources/data_mutations_swissprotaccession.maf deleted file mode 100644 index e4e8e475ca7..00000000000 --- a/core/src/test/resources/data_mutations_swissprotaccession.maf +++ /dev/null @@ -1,13 +0,0 @@ -#sequenced_samples: TCGA-A2-A04T-01 TCGA-A2-A0CR-01 TCGA-A2-A0CW-01 TCGA-A2-A0D3-01 TCGA-A2-A0SY-01 TCGA-A2-A0T5-01 TCGA-A2-A25D-01 TCGA-A2-A4RW-01 -Hugo_Symbol Tumor_Sample_Barcode Variant_Classification HGVSp_Short SWISSPROT -BICC1 TCGA-A2-A04T-01 Missense_Mutation p.L405S Q9H694 -CLEC7A TCGA-A2-A0CR-01 Missense_Mutation p.K145Q Z9ZZZ9ZZZ9 -HSPG2 TCGA-A2-A0CW-01 Missense_Mutation p.D468N P98160 -NLRP3 TCGA-A2-A0D3-01 Nonsense_Mutation p.R699* Q96P20 -SMPD1 TCGA-A2-A0SY-01 Silent p.P63P P17405 -HSPG2 TCGA-A2-A0T5-01 Splice_Site p.X4137? P98160 -HSPG2 TCGA-A2-A0T5-01 Silent p.= P98160 -HSPG2 TCGA-A2-A0T5-01 Intron p.(=) P98160 -SLC38A2 TCGA-A2-A0T5-01 Missense_Mutation p.T32P Q96QD8 -SLC38A2 TCGA-A2-A25D-01 Silent p.V485V Q96QD8 -TMEM216 TCGA-A2-A4RW-01 Missense_Mutation p.R115C Q9P0N5 diff --git a/core/src/test/resources/data_mutations_swissprotname.maf b/core/src/test/resources/data_mutations_swissprotname.maf deleted file mode 100644 index d9e11eb5300..00000000000 --- a/core/src/test/resources/data_mutations_swissprotname.maf +++ /dev/null @@ -1,13 +0,0 @@ -#sequenced_samples: TCGA-A2-A04T-01 TCGA-A2-A0CR-01 TCGA-A2-A0CW-01 TCGA-A2-A0D3-01 TCGA-A2-A0SY-01 TCGA-A2-A0T5-01 TCGA-A2-A25D-01 TCGA-A2-A4RW-01 -Hugo_Symbol Tumor_Sample_Barcode Variant_Classification HGVSp_Short SWISSPROT -BICC1 TCGA-A2-A04T-01 Missense_Mutation p.L405S BICC1_HUMAN -CLEC7A TCGA-A2-A0CR-01 Missense_Mutation p.K145Q HBB_YEAST -HSPG2 TCGA-A2-A0CW-01 Missense_Mutation p.D468N PGBM_HUMAN -NLRP3 TCGA-A2-A0D3-01 Nonsense_Mutation p.R699* NALP3_HUMAN -SMPD1 TCGA-A2-A0SY-01 Silent p.P63P ASM_HUMAN -HSPG2 TCGA-A2-A0T5-01 Splice_Site p.X4137? PGBM_HUMAN -HSPG2 TCGA-A2-A0T5-01 Silent p.= PGBM_HUMAN -HSPG2 TCGA-A2-A0T5-01 Intron p.(=) PGBM_HUMAN -SLC38A2 TCGA-A2-A0T5-01 Missense_Mutation p.T32P S38A2_HUMAN -SLC38A2 TCGA-A2-A25D-01 Silent p.V485V S38A2_HUMAN -TMEM216 TCGA-A2-A4RW-01 Missense_Mutation p.R115C TM216_HUMAN diff --git a/core/src/test/resources/data_mutsig.txt b/core/src/test/resources/data_mutsig.txt deleted file mode 100644 index 7c6b202458b..00000000000 --- a/core/src/test/resources/data_mutsig.txt +++ /dev/null @@ -1,18031 +0,0 @@ -rank gene description N n npat nsite nsil n1 n2 n3 n4 n5 n6 p q -1 APC adenomatous polyposis coli 1924608 241 160 151 4 6 15 11 0 103 106 <1.00e-15 <6.01e-12 -2 TP53 tumor protein p53 289720 122 120 69 2 48 22 12 2 38 0 <1.00e-15 <6.01e-12 -3 KRAS v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 158368 96 96 11 0 0 91 4 0 1 0 <1.00e-15 <6.01e-12 -4 FBXW7 F-box and WD repeat domain containing 7 578816 45 38 28 2 23 6 5 2 9 0 6.33e-15 2.85e-11 -5 SMAD4 SMAD family member 4 381472 30 26 23 0 10 6 9 0 3 2 4.42e-14 1.04e-10 -6 FAM123B family with sequence similarity 123B 743964 27 25 24 2 1 3 4 0 19 0 4.61e-14 1.04e-10 -7 NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 131264 20 20 8 0 2 14 4 0 0 0 4.61e-14 1.04e-10 -8 SMAD2 SMAD family member 2 323456 16 15 12 1 3 5 3 0 5 0 5.60e-14 1.04e-10 -9 PIK3CA phosphoinositide-3-kinase, catalytic, alpha polypeptide 736288 40 33 21 2 6 20 14 0 0 0 5.68e-14 1.04e-10 -10 LRP1B low density lipoprotein-related protein 1B (deleted in tumors) 3172736 79 39 77 18 11 34 23 0 5 6 5.78e-14 1.04e-10 -11 TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 453708 20 18 18 4 5 5 3 0 7 0 7.23e-14 1.18e-10 -12 BRAF v-raf murine sarcoma viral oncogene homolog B1 499744 23 22 4 0 0 0 23 0 0 0 2.01e-13 3.02e-10 -13 ARID1A AT rich interactive domain 1A (SWI-like) 1311268 22 21 20 3 2 5 1 1 13 0 2.97e-11 4.12e-08 -14 TTN titin 24865216 309 86 304 78 82 114 72 3 13 25 4.97e-11 6.24e-08 -15 PCDH9 protocadherin 9 835520 26 22 26 7 3 11 11 0 1 0 5.19e-11 6.24e-08 -16 WBSCR17 Williams-Beuren syndrome chromosome region 17 403312 19 19 18 3 10 5 1 0 3 0 1.30e-10 1.47e-07 -17 DMD dystrophin (muscular dystrophy, Duchenne and Becker types) 2608328 47 33 46 6 10 14 14 0 9 0 1.60e-10 1.70e-07 -18 ATM ataxia telangiectasia mutated 2109720 39 25 37 3 4 18 5 0 6 6 2.46e-10 2.46e-07 -19 ZC3H13 zinc finger CCCH-type containing 13 1066016 26 21 25 1 8 2 1 0 15 0 8.77e-10 8.02e-07 -20 FAT4 FAT tumor suppressor homolog 4 (Drosophila) 3346084 74 40 74 21 19 30 19 1 5 0 8.89e-10 8.02e-07 -21 LIFR leukemia inhibitory factor receptor alpha 754200 24 18 24 5 4 6 9 1 4 0 3.69e-09 3.17e-06 -22 ACVR1B activin A receptor, type IB 340816 15 14 15 0 4 7 2 0 2 0 5.29e-09 4.33e-06 -23 MAP2K4 mitogen-activated protein kinase kinase 4 252000 11 11 10 1 3 4 2 0 2 0 1.60e-08 0.000013 -24 TXNDC3 thioredoxin domain containing 3 (spermatozoa) 409248 14 11 14 2 3 3 3 0 5 0 7.79e-08 0.000058 -25 CNTN6 contactin 6 711200 22 17 22 3 5 13 2 0 2 0 1.01e-07 0.000073 -26 KLHL4 kelch-like 4 (Drosophila) 508704 16 16 16 3 6 8 2 0 0 0 1.09e-07 0.000075 -27 BAI3 brain-specific angiogenesis inhibitor 3 1046976 23 18 21 6 3 10 6 1 3 0 1.37e-07 0.000090 -28 SYNE1 spectrin repeat containing, nuclear envelope 1 6063232 102 47 100 30 23 42 27 0 7 3 1.39e-07 0.000090 -29 SOX9 SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal) 268720 11 10 11 0 0 0 1 0 8 2 1.45e-07 0.000090 -30 CPXCR1 CPX chromosome region, candidate 1 203840 10 9 10 1 2 5 2 0 1 0 1.96e-07 0.00012 -31 PRDM9 PR domain containing 9 610400 20 16 20 4 6 7 4 0 1 2 2.03e-07 0.00012 -32 KIAA1804 540708 18 15 16 0 8 7 1 0 2 0 2.17e-07 0.00012 -33 ACVR2A activin A receptor, type IIA 355264 11 9 10 1 0 0 4 0 5 2 2.84e-07 0.00016 -34 SLITRK1 SLIT and NTRK-like family, member 1 469280 17 15 16 5 6 2 6 0 3 0 3.05e-07 0.00016 -35 DNAH5 dynein, axonemal, heavy chain 5 3138008 70 34 68 15 25 25 11 1 4 4 4.41e-07 0.00023 -36 ATP10A ATPase, class V, type 10A 971776 21 19 21 12 8 6 2 1 4 0 6.59e-07 0.00033 -37 CCDC160 169512 10 7 10 0 0 4 0 1 3 2 7.16e-07 0.00035 -38 CHRDL1 chordin-like 1 318304 12 11 12 1 3 4 2 0 3 0 7.69e-07 0.00036 -39 GRIK3 glutamate receptor, ionotropic, kainate 3 620540 19 17 19 7 14 3 0 1 1 0 9.20e-07 0.00043 -40 ANK2 ankyrin 2, neuronal 2698144 43 31 43 9 16 12 8 2 5 0 1.10e-06 0.00049 -41 TRPC4 transient receptor potential cation channel, subfamily C, member 4 663208 18 17 18 9 4 6 6 0 2 0 1.34e-06 0.00059 -42 ERBB4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 904736 21 18 21 7 1 11 6 1 2 0 1.40e-06 0.00060 -43 EPHA3 EPH receptor A3 682304 17 16 17 6 5 6 5 1 0 0 1.44e-06 0.00060 -44 ODZ1 odz, odd Oz/ten-m homolog 1(Drosophila) 1859648 26 22 25 8 9 8 6 0 3 0 1.48e-06 0.00061 -45 OR6N1 olfactory receptor, family 6, subfamily N, member 1 211232 10 10 10 2 2 6 2 0 0 0 1.61e-06 0.00064 -46 MGC26647 171584 7 7 7 0 1 2 1 0 3 0 1.63e-06 0.00064 -47 ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 256396 7 7 6 0 0 0 1 0 6 0 1.68e-06 0.00064 -48 CSMD3 CUB and Sushi multiple domains 3 2569280 40 28 40 24 8 14 11 2 5 0 1.72e-06 0.00065 -49 MGC42105 296352 11 11 11 1 5 3 0 0 3 0 1.77e-06 0.00065 -50 EPHA5 EPH receptor A5 690984 18 14 18 8 4 5 6 0 3 0 1.85e-06 0.00067 -51 TLL1 tolloid-like 1 700224 17 15 16 4 6 4 6 0 1 0 1.93e-06 0.00067 -52 CDH10 cadherin 10, type 2 (T2-cadherin) 540064 23 14 22 6 7 5 7 0 4 0 1.93e-06 0.00067 -53 OPCML opioid binding protein/cell adhesion molecule-like 253344 10 10 10 2 3 5 0 0 2 0 1.97e-06 0.00067 -54 ADAM29 ADAM metallopeptidase domain 29 552608 13 12 13 2 5 3 4 0 1 0 2.19e-06 0.00073 -55 CDH9 cadherin 9, type 2 (T1-cadherin) 540736 21 15 20 3 6 8 5 0 2 0 2.49e-06 0.00082 -56 OR51V1 olfactory receptor, family 51, subfamily V, member 1 217280 11 9 11 2 2 3 4 0 2 0 2.54e-06 0.00082 -57 CASP8 caspase 8, apoptosis-related cysteine peptidase 392672 11 10 10 0 1 3 3 0 4 0 3.06e-06 0.00097 -58 OR2L13 olfactory receptor, family 2, subfamily L, member 13 211232 10 10 10 2 2 5 3 0 0 0 3.60e-06 0.0011 -59 CASP14 caspase 14, apoptosis-related cysteine peptidase 168672 9 8 8 0 6 1 0 0 2 0 3.68e-06 0.0011 -60 CCBP2 chemokine binding protein 2 259616 10 10 10 0 4 4 2 0 0 0 3.76e-06 0.0011 -61 EVC2 Ellis van Creveld syndrome 2 (limbin) 843720 19 17 19 8 7 7 3 0 2 0 3.88e-06 0.0011 -62 LRRIQ3 426272 12 10 12 1 1 5 4 0 2 0 3.91e-06 0.0011 -63 DPP10 dipeptidyl-peptidase 10 558968 16 13 16 6 2 7 5 0 2 0 4.63e-06 0.0013 -64 PTPRM protein tyrosine phosphatase, receptor type, M 1008252 27 20 26 4 4 12 8 1 2 0 4.69e-06 0.0013 -65 IL1RAPL2 interleukin 1 receptor accessory protein-like 2 470624 10 10 8 4 5 1 2 0 2 0 4.83e-06 0.0013 -66 CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 538048 12 11 12 0 3 4 3 1 1 0 4.83e-06 0.0013 -67 FAM133A family with sequence similarity 133, member A 162240 7 7 7 2 0 2 3 0 2 0 5.04e-06 0.0014 -68 CDH8 cadherin 8, type 2 547456 15 14 14 7 6 5 3 0 1 0 5.29e-06 0.0014 -69 GUCY1A3 guanylate cyclase 1, soluble, alpha 3 475776 17 12 16 7 3 10 0 0 4 0 5.69e-06 0.0015 -70 OR2M4 olfactory receptor, family 2, subfamily M, member 4 210560 8 8 8 0 3 1 2 0 2 0 5.82e-06 0.0015 -71 TMEM132D transmembrane protein 132D 732532 23 19 22 9 7 6 7 2 1 0 5.84e-06 0.0015 -72 FLG filaggrin 2682792 47 32 47 11 17 20 9 0 1 0 5.93e-06 0.0015 -73 EDNRB endothelin receptor type B 325904 13 11 12 6 4 3 5 0 1 0 6.29e-06 0.0016 -74 DOCK2 dedicator of cytokinesis 2 1266496 30 21 28 11 9 9 8 0 4 0 6.97e-06 0.0017 -75 NRXN1 neurexin 1 1042896 24 20 24 11 10 7 4 1 2 0 7.04e-06 0.0017 -76 CDH12 cadherin 12, type 2 (N-cadherin 2) 544096 14 13 12 4 6 3 2 0 3 0 7.97e-06 0.0019 -77 CDH2 cadherin 2, type 1, N-cadherin (neuronal) 609504 22 16 21 0 3 15 3 1 0 0 8.34e-06 0.0020 -78 NRG1 neuregulin 1 674488 14 13 14 2 3 1 5 0 5 0 8.57e-06 0.0020 -79 FAM5C family with sequence similarity 5, member C 521696 16 13 16 3 2 8 4 0 2 0 9.13e-06 0.0021 -80 GRIA4 glutamate receptor, ionotrophic, AMPA 4 680960 19 12 19 4 6 6 5 0 2 0 9.54e-06 0.0022 -81 LPPR4 469056 13 13 13 4 6 6 0 0 1 0 9.88e-06 0.0022 -82 AFF2 AF4/FMR2 family, member 2 900480 19 17 18 10 3 10 6 0 0 0 0.000010 0.0022 -83 LRRN3 leucine rich repeat neuronal 3 477344 11 10 11 3 1 6 3 0 1 0 0.000010 0.0023 -84 DCAF4L2 267008 12 11 12 5 6 2 2 0 2 0 0.000011 0.0024 -85 TRPS1 trichorhinophalangeal syndrome I 875616 19 17 18 6 5 9 3 0 2 0 0.000012 0.0025 -86 CNTN1 contactin 1 705376 17 14 17 3 3 5 5 1 3 0 0.000012 0.0025 -87 GRIA1 glutamate receptor, ionotropic, AMPA 1 623840 19 15 18 5 8 4 6 0 1 0 0.000013 0.0027 -88 MIER3 mesoderm induction early response 1, family member 3 378336 11 11 11 0 3 2 2 0 4 0 0.000013 0.0027 -89 MYO1B myosin IB 790944 17 13 16 2 1 3 4 0 5 4 0.000015 0.0030 -90 LRP2 low density lipoprotein-related protein 2 3181024 52 35 50 16 23 21 5 0 3 0 0.000017 0.0034 -91 SDK1 sidekick homolog 1, cell adhesion molecule (chicken) 1435964 30 27 28 9 19 7 3 0 1 0 0.000017 0.0034 -92 PRIM2 primase, DNA, polypeptide 2 (58kDa) 343896 9 8 8 1 0 1 3 0 5 0 0.000019 0.0037 -93 GPHN gephyrin 538048 12 12 11 1 5 3 2 0 2 0 0.000020 0.0038 -94 SFMBT2 Scm-like with four mbt domains 2 586304 16 14 16 9 5 6 3 0 2 0 0.000023 0.0045 -95 SLC16A7 solute carrier family 16, member 7 (monocarboxylic acid transporter 2) 325472 12 9 11 2 1 5 2 0 4 0 0.000024 0.0045 -96 PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 525896 12 9 11 0 2 0 2 0 4 4 0.000024 0.0045 -97 CHRM2 cholinergic receptor, muscarinic 2 314720 11 10 11 2 3 6 2 0 0 0 0.000024 0.0045 -98 HMCN1 hemicentin 1 3879820 51 30 50 8 14 19 10 1 3 4 0.000025 0.0047 -99 NALCN sodium leak channel, non-selective 1207136 25 20 25 9 12 6 5 1 1 0 0.000026 0.0047 -100 DSEL dermatan sulfate epimerase-like 822752 20 14 20 4 3 10 3 0 4 0 0.000027 0.0048 -101 UBE2NL ubiquitin-conjugating enzyme E2N-like 104384 7 7 6 1 2 4 0 1 0 0 0.000028 0.0050 -102 TPTE transmembrane phosphatase with tensin homology 389760 17 12 15 1 6 2 7 0 2 0 0.000029 0.0051 -103 KCNA4 potassium voltage-gated channel, shaker-related subfamily, member 4 440300 13 12 13 4 5 3 3 0 2 0 0.000030 0.0052 -104 C8B complement component 8, beta polypeptide 408576 10 10 10 0 3 5 2 0 0 0 0.000030 0.0052 -105 PCDH11X protocadherin 11 X-linked 919384 23 14 23 6 4 8 5 1 3 2 0.000031 0.0052 -106 GABRG1 gamma-aminobutyric acid (GABA) A receptor, gamma 1 321216 9 8 9 1 1 4 2 0 2 0 0.000031 0.0052 -107 CDH18 cadherin 18, type 2 541408 16 13 16 6 5 6 3 0 2 0 0.000033 0.0054 -108 RIMS1 regulating synaptic membrane exocytosis 1 974004 21 15 21 3 4 2 8 0 7 0 0.000033 0.0054 -109 KIAA1486 411604 16 13 16 4 10 2 1 0 3 0 0.000033 0.0055 -110 ZNF568 zinc finger protein 568 437920 13 10 13 0 3 5 1 0 4 0 0.000035 0.0057 -111 B2M beta-2-microglobulin 83328 7 5 6 0 0 1 2 0 2 2 0.000036 0.0058 -112 ABCA12 ATP-binding cassette, sub-family A (ABC1), member 12 1798944 33 22 33 12 8 12 11 0 2 0 0.000037 0.0059 -113 DACH2 dachshund homolog 2 (Drosophila) 407696 13 12 12 2 6 6 1 0 0 0 0.000038 0.0060 -114 FSTL5 follistatin-like 5 583296 14 11 14 3 2 6 3 0 3 0 0.000038 0.0060 -115 IFT80 intraflagellar transport 80 homolog (Chlamydomonas) 539840 11 10 11 1 2 3 4 1 1 0 0.000038 0.0060 -116 TMTC1 transmembrane and tetratricopeptide repeat containing 1 536032 14 13 14 3 6 5 2 0 1 0 0.000039 0.0060 -117 GPC6 glypican 6 381696 10 10 9 0 5 4 1 0 0 0 0.000039 0.0060 -118 TNFRSF10C tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain 177840 6 6 2 0 0 6 0 0 0 0 0.000040 0.0060 -119 TLX1NB 31928 2 2 2 0 0 0 0 0 2 0 0.000040 0.0060 -120 NCAM2 neural cell adhesion molecule 2 579264 16 12 16 6 4 6 2 1 3 0 0.000040 0.0060 -121 NRXN3 neurexin 3 806400 18 17 18 4 8 4 4 0 2 0 0.000041 0.0061 -122 PSG8 pregnancy specific beta-1-glycoprotein 8 291424 8 8 6 1 5 2 0 0 1 0 0.000042 0.0063 -123 SPATA17 spermatogenesis associated 17 252224 9 9 9 0 5 0 4 0 0 0 0.000043 0.0064 -124 GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 985824 22 19 22 13 11 5 4 0 0 2 0.000044 0.0064 -125 DCHS2 dachsous 2 (Drosophila) 1941632 40 24 39 15 10 20 5 1 4 0 0.000047 0.0067 -126 PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 2806272 48 26 48 8 10 22 10 1 5 0 0.000048 0.0069 -127 CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 544216 14 14 14 5 2 5 6 1 0 0 0.000051 0.0073 -128 BCHE butyrylcholinesterase 407904 9 9 9 1 3 1 4 0 1 0 0.000053 0.0075 -129 PCDHB5 protocadherin beta 5 504644 16 14 15 2 6 6 3 0 1 0 0.000057 0.0079 -130 ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 396648 9 9 9 1 4 2 1 0 2 0 0.000060 0.0083 -131 FLRT2 fibronectin leucine rich transmembrane protein 2 437528 16 13 16 6 8 5 3 0 0 0 0.000060 0.0083 -132 SCN7A sodium channel, voltage-gated, type VII, alpha 1051568 20 15 20 0 0 6 11 0 3 0 0.000066 0.0089 -133 CSMD1 CUB and Sushi multiple domains 1 2368776 47 26 46 19 9 21 9 1 3 4 0.000066 0.0089 -134 MAP2 microtubule-associated protein 2 1300096 25 16 24 9 2 12 8 0 3 0 0.000066 0.0089 -135 OTOL1 298816 8 8 7 0 3 3 1 0 1 0 0.000068 0.0091 -136 MCF2 MCF.2 cell line derived transforming sequence 696448 15 12 15 0 0 7 6 0 0 2 0.000073 0.0096 -137 DLC1 deleted in liver cancer 1 1054060 29 20 27 8 12 12 3 0 2 0 0.000076 0.010 -138 IL18R1 interleukin 18 receptor 1 373184 10 10 10 2 2 4 3 0 1 0 0.000078 0.010 -139 ZCWPW2 zinc finger, CW type with PWWP domain 2 247072 7 7 6 2 2 1 3 0 1 0 0.000079 0.010 -140 KCNQ3 potassium voltage-gated channel, KQT-like subfamily, member 3 550660 14 13 14 7 9 3 1 0 1 0 0.000082 0.011 -141 MAPK10 mitogen-activated protein kinase 10 324352 8 8 8 1 0 3 3 0 2 0 0.000084 0.011 -142 SORCS1 sortilin-related VPS10 domain containing receptor 1 804048 15 15 15 7 5 6 2 1 1 0 0.000085 0.011 -143 LEPREL1 leprecan-like 1 402776 11 10 11 0 3 2 2 1 3 0 0.000087 0.011 -144 UNC13C unc-13 homolog C (C. elegans) 1491912 24 17 24 5 6 10 3 0 5 0 0.000087 0.011 -145 AMY2A amylase, alpha 2A (pancreatic) 133984 5 5 5 0 0 1 1 0 3 0 0.000087 0.011 -146 ZNF593 zinc finger protein 593 47712 4 4 4 0 1 1 0 0 2 0 0.000088 0.011 -147 SAT1 spermidine/spermine N1-acetyltransferase 1 120960 4 4 2 0 0 0 1 0 3 0 0.000090 0.011 -148 SPAG17 sperm associated antigen 17 1535360 26 17 26 3 5 12 5 0 2 2 0.000093 0.011 -149 ARL2BP ADP-ribosylation factor-like 2 binding protein 115448 6 5 6 1 0 0 3 0 1 2 0.000094 0.011 -150 RWDD2B RWD domain containing 2B 219520 9 8 8 0 3 4 1 0 1 0 0.000097 0.012 -151 GABRA5 gamma-aminobutyric acid (GABA) A receptor, alpha 5 289748 9 9 8 2 3 5 0 0 1 0 0.000098 0.012 -152 FAT2 FAT tumor suppressor homolog 2 (Drosophila) 2943808 51 29 51 9 14 25 8 1 3 0 0.000099 0.012 -153 TRPA1 transient receptor potential cation channel, subfamily A, member 1 776832 19 12 18 7 4 10 3 0 2 0 0.00011 0.013 -154 NAALAD2 N-acetylated alpha-linked acidic dipeptidase 2 514976 13 11 13 0 3 5 4 0 1 0 0.00011 0.013 -155 DKK4 dickkopf homolog 4 (Xenopus laevis) 154784 7 7 6 0 3 2 2 0 0 0 0.00011 0.013 -156 JAKMIP2 janus kinase and microtubule interacting protein 2 562912 17 13 17 4 6 7 3 0 1 0 0.00011 0.013 -157 MAP3K4 mitogen-activated protein kinase kinase kinase 4 1075396 18 17 17 6 7 5 2 0 4 0 0.00011 0.013 -158 KCNH7 potassium voltage-gated channel, subfamily H (eag-related), member 7 833504 19 14 19 2 4 5 7 0 3 0 0.00012 0.013 -159 ANO4 641312 12 11 12 2 4 3 3 0 2 0 0.00012 0.013 -160 ATP7A ATPase, Cu++ transporting, alpha polypeptide (Menkes syndrome) 424544 6 6 6 1 1 5 0 0 0 0 0.00013 0.014 -161 OR8B4 olfactory receptor, family 8, subfamily B, member 4 209216 6 6 6 1 1 2 2 0 1 0 0.00013 0.015 -162 POSTN periostin, osteoblast specific factor 583072 13 11 11 3 6 2 4 0 1 0 0.00013 0.015 -163 GML glycosylphosphatidylinositol anchored molecule like protein 109536 6 6 6 0 1 3 2 0 0 0 0.00014 0.015 -164 ZEB1 zinc finger E-box binding homeobox 1 758768 12 11 12 2 4 4 2 0 2 0 0.00014 0.015 -165 ESR1 estrogen receptor 1 373996 12 11 12 0 4 3 2 1 2 0 0.00014 0.016 -166 HCLS1 hematopoietic cell-specific Lyn substrate 1 338912 8 8 7 2 4 1 0 0 3 0 0.00015 0.016 -167 TNR tenascin R (restrictin, janusin) 932064 21 17 21 7 11 6 1 0 3 0 0.00015 0.016 -168 MYO16 myosin XVI 1135596 22 17 20 5 6 7 5 0 4 0 0.00015 0.016 -169 UGGT2 1024100 14 12 14 3 2 2 7 0 1 2 0.00015 0.016 -170 SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 296128 10 9 10 3 4 5 1 0 0 0 0.00016 0.017 -171 SLC9A9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 448448 13 12 13 0 3 4 5 0 1 0 0.00017 0.017 -172 LUZP2 leucine zipper protein 2 243936 6 6 6 4 2 1 1 0 2 0 0.00017 0.017 -173 NXF5 nuclear RNA export factor 5 251296 7 7 7 0 2 1 2 1 1 0 0.00017 0.017 -174 ANGPTL5 angiopoietin-like 5 268576 9 8 9 1 1 4 2 1 1 0 0.00017 0.017 -175 FGA fibrinogen alpha chain 580252 13 12 13 1 5 3 3 0 2 0 0.00017 0.017 -176 KIAA2022 KIAA2022 1022112 16 15 16 3 2 9 3 0 2 0 0.00017 0.017 -177 PWP1 PWP1 homolog (S. cerevisiae) 350784 8 8 8 0 2 0 3 0 3 0 0.00017 0.017 -178 SH3GL3 SH3-domain GRB2-like 3 230944 9 8 9 0 3 4 0 1 1 0 0.00018 0.018 -179 ACSS3 acyl-CoA synthetase short-chain family member 3 441980 8 8 8 1 0 3 2 0 3 0 0.00018 0.018 -180 ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 1138408 25 19 25 8 7 13 4 0 1 0 0.00018 0.018 -181 COL4A5 collagen, type IV, alpha 5 (Alport syndrome) 1158440 19 15 19 4 2 8 5 0 4 0 0.00020 0.020 -182 RNASE11 ribonuclease, RNase A family, 11 (non-active) 135296 5 5 5 1 0 3 0 1 1 0 0.00020 0.020 -183 EIF4A2 eukaryotic translation initiation factor 4A, isoform 2 284032 5 5 4 0 0 0 1 3 1 0 0.00020 0.020 -184 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6 513272 7 7 7 0 1 2 0 0 4 0 0.00021 0.020 -185 PCDH10 protocadherin 10 657972 20 17 19 10 12 4 2 0 2 0 0.00021 0.021 -186 MAGEC2 melanoma antigen family C, 2 251816 7 7 7 1 0 5 1 0 1 0 0.00021 0.021 -187 STON1-GTF2A1L STON1-GTF2A1L 803264 16 12 15 6 4 6 4 0 2 0 0.00022 0.021 -188 CTSO cathepsin O 192416 7 6 7 0 2 3 2 0 0 0 0.00022 0.021 -189 KRTAP5-5 keratin associated protein 5-5 131768 4 4 1 1 0 0 0 4 0 0 0.00022 0.021 -190 ISL1 ISL LIM homeobox 1 238896 9 8 9 2 2 3 3 0 1 0 0.00023 0.021 -191 FAM22F family with sequence similarity 22, member F 395912 10 10 5 1 1 8 0 0 1 0 0.00023 0.021 -192 TRIM55 tripartite motif-containing 55 398496 10 9 10 0 5 2 0 1 2 0 0.00023 0.022 -193 KCNH5 potassium voltage-gated channel, subfamily H (eag-related), member 5 682080 19 13 19 3 10 5 2 1 1 0 0.00024 0.022 -194 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 1093344 25 18 25 7 10 10 4 0 1 0 0.00024 0.022 -195 DPYD dihydropyrimidine dehydrogenase 719712 14 12 14 4 3 6 3 0 2 0 0.00024 0.022 -196 ZFHX4 zinc finger homeobox 4 2273488 44 24 43 18 11 22 8 0 3 0 0.00024 0.022 -197 ZNF677 zinc finger protein 677 394716 11 9 10 2 0 5 4 0 2 0 0.00025 0.022 -198 OR4A15 olfactory receptor, family 4, subfamily A, member 15 232736 7 6 7 0 1 4 1 0 1 0 0.00025 0.022 -199 PCDH15 protocadherin 15 1686668 31 20 30 8 7 9 10 1 4 0 0.00025 0.022 -200 LRRK2 leucine-rich repeat kinase 2 1744512 24 19 24 5 7 5 9 0 3 0 0.00025 0.022 -201 ARHGAP15 Rho GTPase activating protein 15 331520 7 7 7 1 3 2 1 0 1 0 0.00025 0.022 -202 MAP7 microtubule-associated protein 7 503104 10 10 10 0 2 0 3 0 5 0 0.00026 0.023 -203 ZIM3 zinc finger, imprinted 3 321440 10 9 9 3 2 3 4 0 1 0 0.00026 0.023 -204 SGCZ sarcoglycan zeta 215464 9 7 8 5 3 3 2 0 1 0 0.00027 0.024 -205 POTEB 400540 12 8 12 5 3 3 3 0 3 0 0.00027 0.024 -206 PCDH18 protocadherin 18 766976 19 14 19 9 3 9 6 0 1 0 0.00027 0.024 -207 PCDHB2 protocadherin beta 2 502460 15 14 15 8 9 1 4 0 1 0 0.00027 0.024 -208 HMGN5 126192 3 3 3 0 1 0 0 0 2 0 0.00028 0.024 -209 ITK IL2-inducible T-cell kinase 432544 11 10 10 3 4 2 3 0 2 0 0.00028 0.024 -210 FREM2 FRAS1 related extracellular matrix protein 2 2115344 29 23 29 7 10 7 9 0 3 0 0.00029 0.025 -211 ARID2 AT rich interactive domain 2 (ARID, RFX-like) 1250256 20 15 20 1 4 5 6 0 3 2 0.00029 0.025 -212 ATP6V0D2 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 243040 9 8 9 0 3 2 2 0 2 0 0.00030 0.025 -213 SLCO6A1 solute carrier organic anion transporter family, member 6A1 495488 11 10 11 4 3 3 2 0 3 0 0.00031 0.026 -214 CD1E CD1e molecule 266784 6 6 6 0 2 2 1 0 1 0 0.00032 0.027 -215 SESTD1 SEC14 and spectrin domains 1 483616 9 8 9 1 3 2 3 0 1 0 0.00033 0.028 -216 PRDM2 PR domain containing 2, with ZNF domain 1178016 15 15 14 2 1 4 6 1 3 0 0.00035 0.029 -217 LASS3 LAG1 homolog, ceramide synthase 3 267008 11 9 10 1 4 5 2 0 0 0 0.00035 0.029 -218 CHST4 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 260120 7 7 7 2 4 0 1 0 2 0 0.00036 0.030 -219 ZMYM6 zinc finger, MYM-type 6 754720 11 10 11 0 4 2 3 0 2 0 0.00036 0.030 -220 CNBD1 cyclic nucleotide binding domain containing 1 283832 8 7 8 5 0 2 4 0 2 0 0.00037 0.031 -221 KCNT2 potassium channel, subfamily T, member 2 788480 11 11 11 5 1 4 5 0 1 0 0.00038 0.031 -222 RPE65 retinal pigment epithelium-specific protein 65kDa 371392 9 8 9 3 2 2 2 0 1 2 0.00038 0.031 -223 RIMS2 regulating synaptic membrane exocytosis 2 961436 18 13 16 7 7 3 2 0 6 0 0.00039 0.031 -224 PTEN phosphatase and tensin homolog (mutated in multiple advanced cancers 1) 279552 11 7 9 1 3 2 1 0 3 2 0.00039 0.031 -225 PRKD1 protein kinase D1 569632 15 12 15 5 4 10 0 0 1 0 0.00040 0.032 -226 C4orf37 chromosome 4 open reading frame 37 318976 8 8 8 0 0 5 2 0 1 0 0.00040 0.032 -227 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 261856 8 7 6 2 5 0 1 0 2 0 0.00041 0.033 -228 ZNF521 zinc finger protein 521 882768 15 13 15 4 4 4 5 0 2 0 0.00041 0.033 -229 TUSC3 tumor suppressor candidate 3 233660 8 7 8 2 4 0 3 0 1 0 0.00042 0.033 -230 OR5W2 olfactory receptor, family 5, subfamily W, member 2 209888 7 7 7 0 2 2 3 0 0 0 0.00043 0.033 -231 ZNF99 zinc finger protein 99 704032 20 11 20 0 1 12 4 0 3 0 0.00043 0.033 -232 OLFM3 olfactomedin 3 313824 7 7 7 1 1 4 1 0 1 0 0.00044 0.034 -233 FAM135B family with sequence similarity 135, member B 962528 21 15 20 6 10 6 3 0 2 0 0.00044 0.034 -234 COL22A1 collagen, type XXII, alpha 1 1105240 22 16 22 7 7 7 4 1 3 0 0.00046 0.036 -235 ZNF804B zinc finger protein 804B 910784 16 12 16 5 1 7 6 1 1 0 0.00047 0.036 -236 CFHR5 complement factor H-related 5 392000 6 6 6 1 1 2 1 0 2 0 0.00048 0.037 -237 SLC44A5 solute carrier family 44, member 5 504448 11 9 10 2 3 4 4 0 0 0 0.00049 0.037 -238 TMPRSS11A transmembrane protease, serine 11A 292544 7 7 6 1 4 1 1 0 1 0 0.00049 0.037 -239 PTPN12 protein tyrosine phosphatase, non-receptor type 12 540960 11 10 10 0 2 2 4 0 3 0 0.00050 0.038 -240 NDUFAF4 120960 5 5 5 0 1 3 1 0 0 0 0.00050 0.038 -241 BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 709856 11 9 10 0 1 4 2 0 4 0 0.00051 0.038 -242 RYR2 ryanodine receptor 2 (cardiac) 3356864 59 29 59 17 15 24 16 0 4 0 0.00051 0.038 -243 SGCG sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) 202496 9 7 8 0 6 3 0 0 0 0 0.00052 0.038 -244 RARB retinoic acid receptor, beta 308896 9 8 9 0 1 4 1 0 3 0 0.00052 0.038 -245 CYTL1 cytokine-like 1 79408 4 4 4 0 2 1 0 0 1 0 0.00052 0.038 -246 TECTA tectorin alpha 1453984 26 21 26 13 12 9 3 0 2 0 0.00054 0.040 -247 ZNF334 zinc finger protein 334 461216 8 8 8 1 0 3 3 0 2 0 0.00054 0.040 -248 MLF1 myeloid leukemia factor 1 183092 4 4 3 0 0 1 0 0 3 0 0.00055 0.040 -249 ZEB2 zinc finger E-box binding homeobox 2 824544 20 15 19 2 9 7 4 0 0 0 0.00056 0.040 -250 RXFP2 relaxin/insulin-like family peptide receptor 2 523488 10 10 10 4 1 3 5 0 1 0 0.00056 0.040 -251 LRRIQ1 leucine-rich repeats and IQ motif containing 1 1181712 24 14 23 2 3 9 6 0 2 4 0.00056 0.040 -252 PAPPA pregnancy-associated plasma protein A, pappalysin 1 1019872 20 17 20 5 10 8 1 0 1 0 0.00057 0.040 -253 GFRA1 GDNF family receptor alpha 1 308328 8 8 8 2 2 2 3 0 1 0 0.00057 0.040 -254 PCDHA13 protocadherin alpha 13 618016 16 14 16 2 8 3 2 1 2 0 0.00057 0.040 -255 GALNT14 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) 385056 10 10 10 1 4 4 2 0 0 0 0.00057 0.040 -256 ZNF429 zinc finger protein 429 457184 11 9 11 2 1 7 2 0 1 0 0.00057 0.040 -257 ADCY2 adenylate cyclase 2 (brain) 731948 15 14 15 9 2 6 5 1 1 0 0.00058 0.040 -258 OR7C1 olfactory receptor, family 7, subfamily C, member 1 214340 6 6 6 2 3 1 1 0 1 0 0.00059 0.041 -259 PCDH17 protocadherin 17 713776 21 16 21 8 10 5 6 0 0 0 0.00059 0.041 -260 PEX3 peroxisomal biogenesis factor 3 262080 8 7 8 1 2 1 4 0 1 0 0.00060 0.041 -261 NLRP8 NLR family, pyrin domain containing 8 713888 13 11 13 5 4 5 2 0 2 0 0.00061 0.042 -262 CACNG3 calcium channel, voltage-dependent, gamma subunit 3 215936 8 8 6 2 5 1 1 0 1 0 0.00061 0.042 -263 RHOA ras homolog gene family, member A 133952 5 5 5 0 1 1 2 0 1 0 0.00062 0.043 -264 COL11A1 collagen, type XI, alpha 1 1309504 24 18 24 3 4 12 7 0 1 0 0.00065 0.044 -265 F13A1 coagulation factor XIII, A1 polypeptide 505120 10 10 10 0 3 4 2 0 1 0 0.00065 0.045 -266 C12orf54 chromosome 12 open reading frame 54 92288 4 4 4 0 0 0 3 0 1 0 0.00066 0.045 -267 CLECL1 C-type lectin-like 1 114688 5 4 5 0 0 2 2 0 1 0 0.00066 0.045 -268 OR52A5 olfactory receptor, family 52, subfamily A, member 5 213696 7 7 7 0 1 3 2 0 1 0 0.00067 0.045 -269 INHBA inhibin, beta A 288736 10 9 10 5 4 2 3 0 1 0 0.00068 0.046 -270 CXorf59 chromosome X open reading frame 59 346976 6 6 6 1 0 3 3 0 0 0 0.00069 0.046 -271 P2RY10 purinergic receptor P2Y, G-protein coupled, 10 229376 7 7 7 2 2 3 2 0 0 0 0.00070 0.047 -272 MARCO macrophage receptor with collagenous structure 365208 10 10 10 2 3 7 0 0 0 0 0.00070 0.047 -273 COL6A3 collagen, type VI, alpha 3 2166304 43 27 42 19 29 10 1 0 3 0 0.00072 0.048 -274 COL12A1 collagen, type XII, alpha 1 2106776 37 21 37 5 12 14 7 2 2 0 0.00075 0.049 -275 NMUR2 neuromedin U receptor 2 283136 9 9 9 4 6 2 1 0 0 0 0.00075 0.049 -276 TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like 1228640 22 16 22 6 7 9 4 0 2 0 0.00075 0.049 -277 POLI polymerase (DNA directed) iota 480256 11 8 11 0 1 4 3 0 1 2 0.00075 0.049 -278 MYH11 myosin, heavy chain 11, smooth muscle 1375136 28 21 28 8 12 8 2 1 5 0 0.00075 0.049 -279 SLCO4C1 solute carrier organic anion transporter family, member 4C1 498848 11 11 10 2 2 6 3 0 0 0 0.00077 0.050 -280 SLC6A15 solute carrier family 6, member 15 526624 13 10 13 4 2 5 5 0 1 0 0.00077 0.050 -281 GSK3B glycogen synthase kinase 3 beta 302400 8 7 8 0 3 1 2 0 2 0 0.00079 0.050 -282 CYP11B1 cytochrome P450, family 11, subfamily B, polypeptide 1 346752 9 9 9 2 4 3 1 0 1 0 0.00079 0.050 -283 SACS spastic ataxia of Charlevoix-Saguenay (sacsin) 3047576 45 22 45 9 6 23 10 0 4 2 0.00079 0.050 -284 CHD4 chromodomain helicase DNA binding protein 4 1320396 19 17 18 5 10 6 1 0 2 0 0.00082 0.052 -285 CD180 CD180 molecule 447552 10 9 9 3 1 3 5 0 1 0 0.00083 0.052 -286 C22orf40 86016 3 3 2 0 0 0 1 0 2 0 0.00083 0.052 -287 PCDHB16 protocadherin beta 16 484988 10 10 9 4 3 1 2 2 2 0 0.00087 0.054 -288 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 406560 8 8 8 1 2 0 1 1 4 0 0.00087 0.054 -289 NLRP4 NLR family, pyrin domain containing 4 676704 18 14 17 8 9 6 2 0 1 0 0.00088 0.055 -290 KCNB2 potassium voltage-gated channel, Shab-related subfamily, member 2 614656 12 11 12 7 5 3 1 0 1 2 0.00088 0.055 -291 CNTNAP4 contactin associated protein-like 4 899712 13 12 13 3 1 4 6 0 2 0 0.00089 0.055 -292 USP17L2 243824 9 8 9 2 1 4 3 0 1 0 0.00091 0.056 -293 HNRNPA3 241332 5 5 5 1 1 1 0 0 3 0 0.00092 0.056 -294 FLG2 filaggrin family member 2 1609216 18 13 18 6 1 9 4 0 4 0 0.00092 0.056 -295 RSPO2 R-spondin 2 homolog (Xenopus laevis) 168448 6 6 5 0 2 3 1 0 0 0 0.00092 0.056 -296 FSTL1 follistatin-like 1 210560 6 6 6 0 2 3 0 0 1 0 0.00092 0.056 -297 ZNF560 zinc finger protein 560 538720 15 10 15 0 3 7 2 0 3 0 0.00093 0.056 -298 SSX5 synovial sarcoma, X breakpoint 5 160832 6 6 6 0 2 1 3 0 0 0 0.00093 0.056 -299 SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 663488 13 13 12 1 5 5 3 0 0 0 0.00094 0.057 -300 REG1A regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein) 116704 5 5 5 0 3 2 0 0 0 0 0.00097 0.058 -301 HSPA1L heat shock 70kDa protein 1-like 432320 9 9 9 1 3 4 1 0 1 0 0.00098 0.058 -302 OR4C11 olfactory receptor, family 4, subfamily C, member 11 209888 4 4 4 0 0 3 0 0 1 0 0.00098 0.059 -303 NELL1 NEL-like 1 (chicken) 562912 14 12 14 0 8 4 0 0 2 0 0.00099 0.059 -304 CNGB3 cyclic nucleotide gated channel beta 3 560448 13 10 13 3 1 4 2 1 2 3 0.0010 0.059 -305 C22orf23 chromosome 22 open reading frame 23 151872 6 6 6 1 0 4 1 0 1 0 0.0010 0.059 -306 AURKC aurora kinase C 206600 7 7 7 3 3 3 1 0 0 0 0.0010 0.059 -307 CNTN3 contactin 3 (plasmacytoma associated) 711200 11 10 11 3 3 3 4 0 1 0 0.0010 0.059 -308 MRGPRX1 MAS-related GPR, member X1 217952 7 6 7 1 4 2 0 0 1 0 0.0010 0.059 -309 OR6T1 olfactory receptor, family 6, subfamily T, member 1 218624 6 6 6 3 2 3 1 0 0 0 0.0010 0.059 -310 PTN pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1) 117152 5 5 5 0 1 3 1 0 0 0 0.0010 0.059 -311 ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 212632 6 6 6 0 1 3 0 0 2 0 0.0010 0.059 -312 PROKR1 prokineticin receptor 1 266560 9 9 9 5 4 5 0 0 0 0 0.0010 0.060 -313 CNTNAP2 contactin associated protein-like 2 891884 12 12 12 9 7 3 1 0 1 0 0.0011 0.062 -314 OR51I2 olfactory receptor, family 51, subfamily I, member 2 211232 7 6 7 0 2 3 1 0 1 0 0.0011 0.062 -315 CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 346752 8 8 8 1 2 1 4 0 1 0 0.0011 0.062 -316 SPATA8 spermatogenesis associated 8 73920 3 3 3 1 0 0 3 0 0 0 0.0011 0.062 -317 ZNF22 zinc finger protein 22 (KOX 15) 152096 3 3 1 0 0 0 0 0 3 0 0.0011 0.062 -318 PTPRT protein tyrosine phosphatase, receptor type, T 981560 17 14 17 8 5 6 2 0 4 0 0.0011 0.062 -319 RNF17 ring finger protein 17 1122688 17 12 17 1 0 6 7 0 4 0 0.0011 0.063 -320 ZNF536 zinc finger protein 536 808108 16 15 16 4 12 1 1 0 2 0 0.0011 0.063 -321 HLA-DRA major histocompatibility complex, class II, DR alpha 116564 6 5 6 0 2 2 0 0 0 2 0.0011 0.063 -322 ELAVL2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 247296 7 7 7 1 1 0 5 0 1 0 0.0011 0.063 -323 RNF43 ring finger protein 43 525664 12 11 11 2 4 2 4 0 2 0 0.0011 0.063 -324 PCBP1 poly(rC) binding protein 1 229712 6 6 3 0 0 0 6 0 0 0 0.0012 0.064 -325 RBM10 RNA binding motif protein 10 598980 9 9 8 0 1 2 0 0 6 0 0.0012 0.064 -326 TAS2R10 taste receptor, type 2, member 10 207872 6 6 6 1 2 1 2 0 1 0 0.0012 0.064 -327 GRM7 glutamate receptor, metabotropic 7 623588 12 11 11 2 4 2 4 0 2 0 0.0012 0.064 -328 OR2M2 olfactory receptor, family 2, subfamily M, member 2 234752 7 6 7 0 1 5 1 0 0 0 0.0012 0.064 -329 OR4A5 olfactory receptor, family 4, subfamily A, member 5 213248 6 5 6 2 0 2 3 0 1 0 0.0012 0.064 -330 ZNF43 zinc finger protein 43 547904 10 10 10 3 0 1 8 0 1 0 0.0012 0.064 -331 SAMD9L sterile alpha motif domain containing 9-like 1066016 19 13 19 4 2 10 5 0 2 0 0.0012 0.064 -332 OR5B12 olfactory receptor, family 5, subfamily B, member 12 212576 6 5 6 1 1 1 2 0 2 0 0.0012 0.065 -333 MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 500656 12 10 12 1 1 7 3 0 1 0 0.0012 0.065 -334 CDON Cdon homolog (mouse) 867104 14 14 14 8 7 3 3 0 1 0 0.0012 0.065 -335 GLRB glycine receptor, beta 342720 7 7 7 4 2 0 3 0 2 0 0.0012 0.065 -336 SLCO1B3 solute carrier organic anion transporter family, member 1B3 484960 8 8 8 3 1 2 4 0 1 0 0.0012 0.066 -337 OLFML1 olfactomedin-like 1 272328 7 7 7 0 1 4 1 0 1 0 0.0012 0.066 -338 IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 271704 7 7 7 1 4 1 1 0 1 0 0.0012 0.066 -339 OR52H1 olfactory receptor, family 52, subfamily H, member 1 216608 7 7 7 0 2 3 2 0 0 0 0.0013 0.068 -340 P2RY14 purinergic receptor P2Y, G-protein coupled, 14 228704 6 6 6 0 1 5 0 0 0 0 0.0013 0.068 -341 CHST9 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 302848 10 8 10 0 2 4 3 1 0 0 0.0013 0.068 -342 TET1 tet oncogene 1 1445920 20 16 20 5 3 12 3 0 2 0 0.0013 0.070 -343 LRTM1 leucine-rich repeats and transmembrane domains 1 235200 7 7 7 0 1 4 2 0 0 0 0.0013 0.070 -344 AKIRIN2 93212 4 4 4 0 1 0 2 0 1 0 0.0013 0.070 -345 KCNQ5 potassium voltage-gated channel, KQT-like subfamily, member 5 591192 10 10 10 2 3 2 3 0 2 0 0.0014 0.071 -346 OR52J3 olfactory receptor, family 52, subfamily J, member 3 210560 5 5 5 1 0 2 1 1 1 0 0.0014 0.071 -347 LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 397424 11 10 11 1 2 7 1 1 0 0 0.0014 0.071 -348 ZNF208 zinc finger protein 208 783748 17 11 17 3 0 11 6 0 0 0 0.0014 0.071 -349 PPP1R3A protein phosphatase 1, regulatory (inhibitor) subunit 3A 758240 13 12 13 1 2 4 7 0 0 0 0.0014 0.071 -350 OR10G9 olfactory receptor, family 10, subfamily G, member 9 210560 6 6 6 0 2 3 1 0 0 0 0.0014 0.071 -351 SLCO1B1 solute carrier organic anion transporter family, member 1B1 477568 12 8 12 2 2 2 4 0 2 2 0.0014 0.072 -352 RIMBP2 RIMS binding protein 2 704060 16 16 16 4 7 5 2 0 2 0 0.0014 0.072 -353 ASB5 ankyrin repeat and SOCS box-containing 5 228032 9 7 9 0 1 4 3 0 1 0 0.0014 0.072 -354 FCRL5 Fc receptor-like 5 671568 11 11 11 0 4 2 1 1 3 0 0.0014 0.072 -355 MACC1 576800 12 11 12 3 3 6 2 1 0 0 0.0014 0.072 -356 CEP70 centrosomal protein 70kDa 416192 8 8 8 1 1 3 3 0 1 0 0.0014 0.073 -357 ANXA10 annexin A10 229152 4 4 4 0 1 0 0 0 3 0 0.0014 0.073 -358 GABRG2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 328832 11 8 11 4 3 7 0 0 1 0 0.0015 0.073 -359 QRFPR 288608 8 7 8 1 2 2 3 0 1 0 0.0015 0.073 -360 IGFBP3 insulin-like growth factor binding protein 3 108640 4 4 4 0 2 0 2 0 0 0 0.0015 0.073 -361 GAB3 GRB2-associated binding protein 3 387072 7 7 7 0 1 1 3 0 2 0 0.0015 0.073 -362 TMEFF1 transmembrane protein with EGF-like and two follistatin-like domains 1 220192 8 7 8 1 1 6 1 0 0 0 0.0015 0.074 -363 OR52N1 olfactory receptor, family 52, subfamily N, member 1 216608 6 6 6 0 0 3 3 0 0 0 0.0015 0.074 -364 CACNG7 calcium channel, voltage-dependent, gamma subunit 7 189952 6 6 6 0 4 0 1 1 0 0 0.0015 0.075 -365 C20orf71 chromosome 20 open reading frame 71 177632 5 5 5 1 3 2 0 0 0 0 0.0015 0.075 -366 CADM1 cell adhesion molecule 1 281592 8 8 7 3 6 0 2 0 0 0 0.0015 0.075 -367 MAP1B microtubule-associated protein 1B 1661996 32 18 31 9 8 14 6 0 2 2 0.0015 0.075 -368 ZFP3 zinc finger protein 3 homolog (mouse) 338912 10 8 9 1 0 6 3 0 1 0 0.0015 0.075 -369 INSL6 insulin-like 6 145600 5 5 5 2 1 1 1 0 2 0 0.0015 0.075 -370 CYP7B1 cytochrome P450, family 7, subfamily B, polypeptide 1 317856 8 7 8 1 3 1 4 0 0 0 0.0016 0.078 -371 FAM47C family with sequence similarity 47, member C 696272 12 12 12 2 6 4 1 0 1 0 0.0016 0.078 -372 NCKAP5 1274388 25 15 25 4 5 13 4 0 3 0 0.0016 0.078 -373 E2F7 E2F transcription factor 7 623616 12 10 12 3 2 4 1 0 3 2 0.0016 0.078 -374 CADPS Ca2+-dependent secretion activator 879064 18 13 17 6 7 8 1 0 2 0 0.0016 0.079 -375 SCN11A sodium channel, voltage-gated, type XI, alpha subunit 1227520 22 17 19 6 12 5 4 0 1 0 0.0017 0.079 -376 CYLC2 cylicin, basic protein of sperm head cytoskeleton 2 239008 8 6 8 0 1 3 3 0 1 0 0.0017 0.079 -377 MLF1IP MLF1 interacting protein 283332 7 7 7 1 1 2 2 0 2 0 0.0017 0.079 -378 TRPC6 transient receptor potential cation channel, subfamily C, member 6 621276 13 11 13 1 4 6 3 0 0 0 0.0017 0.079 -379 NAP1L3 nucleosome assembly protein 1-like 3 330792 8 7 8 1 2 3 2 0 1 0 0.0017 0.079 -380 TM9SF1 transmembrane 9 superfamily member 1 420756 10 9 10 1 3 4 2 1 0 0 0.0017 0.079 -381 C9orf79 chromosome 9 open reading frame 79 969668 14 13 14 5 3 8 2 0 1 0 0.0017 0.079 -382 KCNIP1 Kv channel interacting protein 1 181888 6 5 6 2 1 1 2 0 2 0 0.0017 0.080 -383 NFIA nuclear factor I/A 340952 8 8 8 1 2 3 2 0 1 0 0.0017 0.080 -384 BOC Boc homolog (mouse) 746020 15 14 15 1 7 6 2 0 0 0 0.0017 0.080 -385 STAG1 stromal antigen 1 875616 13 12 13 3 5 4 1 1 2 0 0.0017 0.080 -386 VCAN versican 2289196 37 19 36 16 9 14 10 0 4 0 0.0017 0.080 -387 CPXM2 carboxypeptidase X (M14 family), member 2 452256 12 10 12 1 4 2 2 0 4 0 0.0017 0.080 -388 SLC26A7 solute carrier family 26, member 7 471296 7 7 7 4 0 2 3 0 2 0 0.0017 0.080 -389 C5orf36 chromosome 5 open reading frame 36 221088 5 5 5 1 1 2 0 0 2 0 0.0018 0.082 -390 FERD3L Fer3-like (Drosophila) 113120 5 5 5 2 4 0 1 0 0 0 0.0018 0.082 -391 SLITRK3 SLIT and NTRK-like family, member 3 658112 11 9 10 3 3 4 1 0 3 0 0.0018 0.082 -392 SNAPC1 small nuclear RNA activating complex, polypeptide 1, 43kDa 256928 5 5 5 1 0 1 1 0 3 0 0.0018 0.082 -393 SCML4 sex comb on midleg-like 4 (Drosophila) 186592 7 7 6 0 4 2 1 0 0 0 0.0018 0.082 -394 COL3A1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) 999968 12 12 12 3 1 6 1 0 4 0 0.0018 0.082 -395 ZNF804A zinc finger protein 804A 816704 16 11 16 4 1 10 3 0 2 0 0.0018 0.082 -396 ADAM7 ADAM metallopeptidase domain 7 527072 12 10 12 5 3 5 3 0 1 0 0.0018 0.082 -397 FIGN fidgetin 512512 10 9 10 0 3 3 3 0 1 0 0.0018 0.082 -398 PDE10A phosphodiesterase 10A 550120 11 9 11 2 2 5 2 0 2 0 0.0018 0.082 -399 CALCRL calcitonin receptor-like 321216 6 6 6 2 0 3 3 0 0 0 0.0018 0.082 -400 ARAP2 1174432 18 13 18 4 3 7 3 0 5 0 0.0018 0.083 -401 SYT16 synaptotagmin XVI 439488 9 9 9 2 3 1 2 1 2 0 0.0018 0.083 -402 DAB1 disabled homolog 1 (Drosophila) 378560 7 7 7 5 2 3 0 0 2 0 0.0018 0.083 -403 TCERG1 transcription elongation regulator 1 754208 16 11 16 2 5 2 4 0 3 2 0.0018 0.083 -404 CLEC4C C-type lectin domain family 4, member C 149184 5 5 5 1 1 2 1 0 1 0 0.0019 0.084 -405 ZNF326 zinc finger protein 326 398944 11 8 11 2 3 2 2 0 2 2 0.0019 0.084 -406 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 1313696 14 12 14 5 3 2 2 0 7 0 0.0019 0.084 -407 COL1A2 collagen, type I, alpha 2 955288 16 15 16 5 5 9 1 0 1 0 0.0019 0.084 -408 TAS2R50 taste receptor, type 2, member 50 202496 5 5 5 1 2 1 0 0 2 0 0.0019 0.084 -409 RBMS3 RNA binding motif, single stranded interacting protein 308672 6 6 6 1 1 2 3 0 0 0 0.0019 0.084 -410 LARP4B 509392 12 11 12 1 5 2 2 0 3 0 0.0019 0.084 -411 ZNF454 zinc finger protein 454 355040 9 7 9 2 0 6 2 0 1 0 0.0019 0.085 -412 ZNF667 zinc finger protein 667 409472 9 9 9 1 3 2 4 0 0 0 0.0019 0.085 -413 NTM 259616 7 7 7 2 3 3 0 0 1 0 0.0019 0.085 -414 C10orf90 chromosome 10 open reading frame 90 472500 12 10 12 7 4 4 2 0 2 0 0.0020 0.085 -415 NGB neuroglobin 82140 3 3 3 0 0 1 1 0 1 0 0.0020 0.085 -416 UGT2A1 UDP glucuronosyltransferase 2 family, polypeptide A1 360192 8 7 7 1 1 3 1 0 3 0 0.0020 0.085 -417 USP44 ubiquitin specific peptidase 44 483616 11 11 11 3 3 1 6 0 1 0 0.0020 0.085 -418 TMBIM4 transmembrane BAX inhibitor motif containing 4 153144 4 4 4 0 1 2 1 0 0 0 0.0020 0.085 -419 HTR1E 5-hydroxytryptamine (serotonin) receptor 1E 246848 7 7 7 3 4 2 0 0 1 0 0.0020 0.085 -420 OR6K3 olfactory receptor, family 6, subfamily K, member 3 212800 6 5 6 1 1 3 2 0 0 0 0.0020 0.086 -421 ARHGAP20 Rho GTPase activating protein 20 794400 16 11 16 2 3 9 1 0 3 0 0.0020 0.086 -422 PDZRN4 PDZ domain containing RING finger 4 615832 17 13 17 3 6 2 9 0 0 0 0.0020 0.086 -423 CXorf66 245952 5 5 5 0 0 1 2 0 2 0 0.0020 0.086 -424 SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 538048 13 10 13 4 5 4 3 0 1 0 0.0020 0.086 -425 OR8K1 olfactory receptor, family 8, subfamily K, member 1 215936 6 6 6 2 2 2 2 0 0 0 0.0020 0.087 -426 HCN1 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 539952 15 10 15 6 4 2 5 1 1 2 0.0021 0.087 -427 BANK1 B-cell scaffold protein with ankyrin repeats 1 525952 10 8 10 2 0 3 5 0 2 0 0.0021 0.087 -428 CDC27 cell division cycle 27 homolog (S. cerevisiae) 575456 13 10 9 6 3 1 6 0 3 0 0.0021 0.087 -429 GIGYF2 GRB10 interacting GYF protein 2 877732 13 10 12 4 2 4 1 0 6 0 0.0021 0.087 -430 CRTC1 CREB regulated transcription coactivator 1 379960 6 6 3 1 1 0 0 0 5 0 0.0021 0.087 -431 HKR1 GLI-Kruppel family member HKR1 447104 9 8 9 1 3 3 1 0 2 0 0.0021 0.088 -432 C15orf2 chromosome 15 open reading frame 2 745808 15 12 14 11 6 5 4 0 0 0 0.0021 0.089 -433 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 (aggrecanase-2) 562212 12 12 12 4 5 3 3 1 0 0 0.0022 0.090 -434 ADAM2 ADAM metallopeptidase domain 2 (fertilin beta) 512512 9 8 9 1 1 4 2 0 2 0 0.0022 0.090 -435 CADM2 cell adhesion molecule 2 303296 8 7 8 1 2 4 1 0 1 0 0.0022 0.090 -436 ZHX2 zinc fingers and homeoboxes 2 564032 10 10 9 0 5 2 0 0 3 0 0.0022 0.090 -437 SCN1A sodium channel, voltage-gated, type I, alpha subunit 1368864 23 15 23 8 1 8 10 0 4 0 0.0022 0.091 -438 ERBB3 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 956928 14 14 10 1 6 5 2 1 0 0 0.0022 0.091 -439 ASTN1 astrotactin 1 888804 16 15 16 7 8 5 3 0 0 0 0.0022 0.091 -440 TGFBR2 transforming growth factor, beta receptor II (70/80kDa) 403896 7 7 7 2 2 2 1 0 2 0 0.0023 0.093 -441 SYNC 110208 5 5 5 0 0 3 2 0 0 0 0.0023 0.093 -442 UNC5C unc-5 homolog C (C. elegans) 640640 12 11 12 2 2 6 4 0 0 0 0.0023 0.095 -443 PDGFRA platelet-derived growth factor receptor, alpha polypeptide 752192 18 11 18 7 3 6 4 0 3 2 0.0023 0.095 -444 ASCC3 activating signal cointegrator 1 complex subunit 3 1539328 21 16 19 0 7 5 6 0 3 0 0.0023 0.095 -445 C3orf67 chromosome 3 open reading frame 67 389760 8 8 8 0 2 1 4 0 1 0 0.0023 0.095 -446 LRGUK leucine-rich repeats and guanylate kinase domain containing 572992 11 10 11 1 2 5 3 1 0 0 0.0024 0.095 -447 LUM lumican 229600 6 6 6 1 3 1 1 0 1 0 0.0024 0.095 -448 CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 622424 12 11 12 2 4 3 3 0 2 0 0.0024 0.095 -449 SEC11C SEC11 homolog C (S. cerevisiae) 127428 4 4 4 0 1 1 1 0 1 0 0.0024 0.095 -450 CWF19L2 CWF19-like 2, cell cycle control (S. pombe) 473120 13 8 13 0 0 7 3 0 3 0 0.0024 0.095 -451 OR13F1 olfactory receptor, family 13, subfamily F, member 1 215936 4 4 4 1 2 0 0 0 2 0 0.0024 0.095 -452 SALL1 sal-like 1 (Drosophila) 893088 17 15 17 9 8 5 3 0 1 0 0.0024 0.095 -453 ZNF569 zinc finger protein 569 465248 12 8 12 3 0 4 7 0 1 0 0.0024 0.095 -454 CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 767424 11 10 11 4 2 1 6 0 2 0 0.0024 0.095 -455 ABCB4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 889056 11 11 11 5 1 2 5 0 3 0 0.0024 0.096 -456 OR2L3 olfactory receptor, family 2, subfamily L, member 3 211232 7 6 7 0 1 2 3 0 1 0 0.0024 0.096 -457 VWA5A 544992 8 8 8 4 1 3 1 0 3 0 0.0024 0.096 -458 ADAM18 ADAM metallopeptidase domain 18 515200 13 8 13 0 1 5 5 0 2 0 0.0024 0.096 -459 TMEM74 transmembrane protein 74 206528 6 6 5 0 5 1 0 0 0 0 0.0025 0.096 -460 SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 721504 11 9 11 2 5 1 2 0 3 0 0.0025 0.098 -461 DOK5 docking protein 5 213472 6 6 5 0 4 2 0 0 0 0 0.0025 0.098 -462 IL2 interleukin 2 107072 4 4 4 0 0 4 0 0 0 0 0.0026 0.100 -463 C6orf204 chromosome 6 open reading frame 204 536760 8 8 8 1 1 2 3 0 2 0 0.0026 0.10 -464 ZNF19 zinc finger protein 19 312032 8 8 7 0 0 6 1 0 1 0 0.0026 0.10 -465 MMP7 matrix metallopeptidase 7 (matrilysin, uterine) 185472 5 5 5 1 3 1 0 0 1 0 0.0026 0.10 -466 CACHD1 cache domain containing 1 846720 17 14 16 3 5 7 3 0 2 0 0.0026 0.10 -467 OSBPL6 oxysterol binding protein-like 6 676256 11 11 11 2 3 4 1 2 1 0 0.0027 0.10 -468 GALNTL6 415296 8 8 8 0 1 4 2 0 1 0 0.0027 0.10 -469 NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 598976 10 9 10 0 2 5 2 0 1 0 0.0027 0.10 -470 ZNF154 zinc finger protein 154 291992 7 6 7 0 1 2 2 0 2 0 0.0027 0.10 -471 KRTAP19-6 keratin associated protein 19-6 40408 2 2 2 0 0 2 0 0 0 0 0.0028 0.11 -472 MAP2K3 mitogen-activated protein kinase kinase 3 240156 6 6 6 2 1 1 2 2 0 0 0.0028 0.11 -473 MTTP microsomal triglyceride transfer protein 617568 12 10 12 2 3 5 2 0 2 0 0.0028 0.11 -474 OR6N2 olfactory receptor, family 6, subfamily N, member 2 214592 5 5 5 1 0 3 1 0 1 0 0.0028 0.11 -475 MSRB3 methionine sulfoxide reductase B3 137144 4 4 4 1 1 1 2 0 0 0 0.0028 0.11 -476 GIMAP5 GTPase, IMAP family member 5 205408 5 5 5 0 1 1 1 0 2 0 0.0028 0.11 -477 ARMC4 armadillo repeat containing 4 704648 13 11 13 5 4 5 2 1 1 0 0.0028 0.11 -478 OR51G2 olfactory receptor, family 51, subfamily G, member 2 212576 8 6 8 1 2 3 3 0 0 0 0.0028 0.11 -479 CCDC88A coiled-coil domain containing 88A 1265328 17 12 17 4 2 3 9 0 3 0 0.0029 0.11 -480 GPR87 G protein-coupled receptor 87 243040 5 5 5 0 1 1 1 0 2 0 0.0029 0.11 -481 PTH2R parathyroid hormone 2 receptor 381920 7 7 7 3 1 2 4 0 0 0 0.0029 0.11 -482 FBXO4 F-box protein 4 229600 5 5 5 1 0 2 2 0 1 0 0.0029 0.11 -483 OR10S1 olfactory receptor, family 10, subfamily S, member 1 224000 7 7 7 3 3 3 1 0 0 0 0.0029 0.11 -484 GZMK granzyme K (granzyme 3; tryptase II) 182560 6 4 6 0 1 2 1 0 2 0 0.0029 0.11 -485 CHST10 carbohydrate sulfotransferase 10 244384 8 8 8 1 4 2 2 0 0 0 0.0029 0.11 -486 RP9 retinitis pigmentosa 9 (autosomal dominant) 119616 3 3 2 0 0 1 0 0 2 0 0.0029 0.11 -487 CELA1 176728 5 4 5 0 1 0 0 1 1 2 0.0029 0.11 -488 ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 950432 18 12 18 5 4 5 5 0 4 0 0.0029 0.11 -489 NLGN4X neuroligin 4, X-linked 551920 10 10 9 10 4 3 2 0 1 0 0.0030 0.11 -490 PDZD11 PDZ domain containing 11 97136 3 3 3 0 1 0 1 0 1 0 0.0030 0.11 -491 OR6K2 olfactory receptor, family 6, subfamily K, member 2 219296 6 5 6 1 2 2 1 0 1 0 0.0030 0.11 -492 DKK2 dickkopf homolog 2 (Xenopus laevis) 178304 6 6 5 1 6 0 0 0 0 0 0.0030 0.11 -493 TNNI3K TNNI3 interacting kinase 663712 14 10 14 2 3 8 2 0 1 0 0.0030 0.11 -494 OR13C9 olfactory receptor, family 13, subfamily C, member 9 215264 5 5 5 1 0 4 0 1 0 0 0.0031 0.11 -495 CLDN17 claudin 17 152096 5 5 5 1 3 1 0 0 1 0 0.0031 0.11 -496 MGAT4C mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 324576 9 7 9 0 0 1 5 0 1 2 0.0031 0.11 -497 C10orf84 chromosome 10 open reading frame 84 163520 5 5 5 0 1 1 3 0 0 0 0.0031 0.11 -498 DNMT1 DNA (cytosine-5-)-methyltransferase 1 1111012 19 17 15 3 11 2 2 3 1 0 0.0031 0.11 -499 ZNF474 zinc finger protein 474 246176 8 7 8 0 3 4 1 0 0 0 0.0032 0.11 -500 C4BPA complement component 4 binding protein, alpha 411712 7 7 7 2 3 3 0 0 1 0 0.0032 0.11 -501 ZNF287 zinc finger protein 287 514080 7 7 7 0 0 2 3 0 2 0 0.0032 0.11 -502 SERPINI1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 283360 5 5 5 0 0 2 2 0 1 0 0.0032 0.11 -503 DNER delta/notch-like EGF repeat containing 444864 9 8 9 4 4 2 0 0 3 0 0.0032 0.11 -504 CNKSR2 connector enhancer of kinase suppressor of Ras 2 714932 9 9 9 5 2 5 1 0 1 0 0.0032 0.11 -505 SCML2 sex comb on midleg-like 2 (Drosophila) 483616 7 7 7 4 0 3 1 0 3 0 0.0032 0.11 -506 ZNF583 zinc finger protein 583 386624 11 7 10 1 2 7 0 0 2 0 0.0032 0.11 -507 FZD3 frizzled homolog 3 (Drosophila) 453600 13 10 12 1 5 4 2 0 2 0 0.0033 0.12 -508 TRIM44 tripartite motif-containing 44 232036 7 6 6 1 3 2 1 0 1 0 0.0033 0.12 -509 OR8H1 olfactory receptor, family 8, subfamily H, member 1 210560 6 6 6 3 2 2 1 0 1 0 0.0033 0.12 -510 SYT10 synaptotagmin X 358400 6 6 6 1 1 3 0 0 2 0 0.0033 0.12 -511 CLEC18C 132500 5 5 4 1 4 1 0 0 0 0 0.0033 0.12 -512 SCARA5 scavenger receptor class A, member 5 (putative) 267604 6 6 6 0 4 0 0 0 2 0 0.0034 0.12 -513 BHMT2 betaine-homocysteine methyltransferase 2 246656 5 5 4 3 1 0 0 1 3 0 0.0034 0.12 -514 WNK3 WNK lysine deficient protein kinase 3 1226120 13 12 13 4 2 6 1 0 2 2 0.0034 0.12 -515 PNLIP pancreatic lipase 323904 7 7 7 0 1 5 0 0 1 0 0.0034 0.12 -516 SIGLEC8 sialic acid binding Ig-like lectin 8 342188 7 7 7 4 2 5 0 0 0 0 0.0034 0.12 -517 SORCS3 sortilin-related VPS10 domain containing receptor 3 709604 12 12 12 7 7 3 2 0 0 0 0.0034 0.12 -518 OR13C3 olfactory receptor, family 13, subfamily C, member 3 234752 6 5 6 1 1 5 0 0 0 0 0.0034 0.12 -519 TTLL7 tubulin tyrosine ligase-like family, member 7 614656 8 8 8 0 4 1 0 0 3 0 0.0034 0.12 -520 ARNTL aryl hydrocarbon receptor nuclear translocator-like 438368 11 8 10 0 2 4 1 0 2 2 0.0034 0.12 -521 UBQLNL ubiquilin-like 320768 5 5 5 2 1 1 2 0 1 0 0.0035 0.12 -522 SCN9A sodium channel, voltage-gated, type IX, alpha subunit 1339184 20 14 20 9 4 6 6 1 3 0 0.0035 0.12 -523 SPRR2E small proline-rich protein 2E 49952 2 2 2 1 0 2 0 0 0 0 0.0035 0.12 -524 POU4F2 POU class 4 homeobox 2 245724 9 9 9 2 6 1 1 1 0 0 0.0035 0.12 -525 DCLK1 doublecortin-like kinase 1 500464 13 11 13 4 7 4 2 0 0 0 0.0035 0.12 -526 ODF2L outer dense fiber of sperm tails 2-like 447776 10 6 9 0 0 2 2 0 3 3 0.0036 0.12 -527 KRTAP6-2 keratin associated protein 6-2 43232 3 3 3 0 2 1 0 0 0 0 0.0036 0.12 -528 OR52E4 olfactory receptor, family 52, subfamily E, member 4 211232 6 5 6 1 1 3 1 0 1 0 0.0036 0.12 -529 VGLL1 vestigial like 1 (Drosophila) 177632 5 5 5 2 1 3 0 0 1 0 0.0036 0.12 -530 C7orf16 chromosome 7 open reading frame 16 108416 4 4 4 2 1 3 0 0 0 0 0.0037 0.12 -531 PLSCR2 phospholipid scramblase 2 156576 5 5 5 0 2 2 1 0 0 0 0.0037 0.12 -532 ZNF354C zinc finger protein 354C 376460 9 7 9 1 0 2 5 0 2 0 0.0037 0.12 -533 TPH2 tryptophan hydroxylase 2 339808 8 7 8 1 3 1 3 0 1 0 0.0038 0.13 -534 ACTBL2 actin, beta-like 2 254240 8 8 8 2 1 2 5 0 0 0 0.0038 0.13 -535 SLC45A2 solute carrier family 45, member 2 366464 6 5 6 3 2 1 1 0 2 0 0.0038 0.13 -536 APPL1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 483840 10 8 9 1 3 2 2 0 1 2 0.0038 0.13 -537 PCDHA10 protocadherin alpha 10 415492 13 10 13 0 4 6 2 0 1 0 0.0039 0.13 -538 SPRYD5 SPRY domain containing 5 204288 4 4 4 1 0 1 2 0 1 0 0.0039 0.13 -539 FMR1NB fragile X mental retardation 1 neighbor 176512 6 6 6 1 1 4 1 0 0 0 0.0039 0.13 -540 CUL1 cullin 1 540960 9 8 9 2 2 2 1 0 4 0 0.0039 0.13 -541 HTR2C 5-hydroxytryptamine (serotonin) receptor 2C 312032 8 7 8 1 5 2 1 0 0 0 0.0039 0.13 -542 TFAP2D transcription factor AP-2 delta (activating enhancer binding protein 2 delta) 311584 7 7 7 5 1 6 0 0 0 0 0.0039 0.13 -543 OR52B4 olfactory receptor, family 52, subfamily B, member 4 212576 5 5 5 2 1 1 2 0 1 0 0.0039 0.13 -544 DNAJC5B DnaJ (Hsp40) homolog, subfamily C, member 5 beta 137984 5 5 5 1 2 0 1 0 2 0 0.0039 0.13 -545 C20orf160 chromosome 20 open reading frame 160 187512 6 6 6 1 3 3 0 0 0 0 0.0039 0.13 -546 GYS2 glycogen synthase 2 (liver) 487424 11 10 11 3 2 5 2 0 2 0 0.0039 0.13 -547 USH2A Usher syndrome 2A (autosomal recessive, mild) 3562832 53 26 51 17 14 25 10 1 3 0 0.0040 0.13 -548 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 696332 12 11 12 6 5 4 2 0 1 0 0.0040 0.13 -549 C14orf106 chromosome 14 open reading frame 106 761704 11 8 11 0 1 4 4 0 2 0 0.0040 0.13 -550 TCF12 transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 508480 10 8 10 1 5 2 1 0 2 0 0.0041 0.13 -551 DRAM2 185696 4 4 4 1 2 0 1 0 1 0 0.0041 0.13 -552 OR2T6 olfactory receptor, family 2, subfamily T, member 6 208544 5 5 5 0 2 3 0 0 0 0 0.0041 0.13 -553 SCN10A sodium channel, voltage-gated, type X, alpha subunit 1339296 24 15 23 7 13 6 3 0 2 0 0.0041 0.13 -554 GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 307692 9 8 8 2 4 3 2 0 0 0 0.0041 0.13 -555 COL14A1 collagen, type XIV, alpha 1 1249696 23 14 22 8 8 11 2 0 2 0 0.0042 0.14 -556 FCHO2 FCH domain only 2 503560 9 6 9 0 0 1 2 0 3 3 0.0042 0.14 -557 POU3F4 POU class 3 homeobox 4 241712 7 7 7 3 3 2 1 0 1 0 0.0042 0.14 -558 IL17RA interleukin 17 receptor A 399308 7 7 6 2 1 1 1 0 4 0 0.0042 0.14 -559 ZNF559 zinc finger protein 559 365792 7 7 7 0 1 4 1 0 1 0 0.0042 0.14 -560 SLITRK2 SLIT and NTRK-like family, member 2 569408 12 10 12 4 3 6 1 0 2 0 0.0043 0.14 -561 CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 432016 8 7 8 3 0 5 3 0 0 0 0.0043 0.14 -562 CDK14 315392 5 5 5 0 2 1 1 0 1 0 0.0043 0.14 -563 HRNR hornerin 1405000 17 16 16 3 10 4 0 1 2 0 0.0043 0.14 -564 ZNF329 zinc finger protein 329 365120 8 7 8 1 2 2 3 0 1 0 0.0043 0.14 -565 ZCCHC5 zinc finger, CCHC domain containing 5 320768 5 5 5 1 0 3 2 0 0 0 0.0043 0.14 -566 PCDH20 protocadherin 20 625464 10 9 10 5 1 3 4 1 1 0 0.0044 0.14 -567 OR6B3 olfactory receptor, family 6, subfamily B, member 3 221144 6 6 6 4 2 2 2 0 0 0 0.0044 0.14 -568 RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 418880 10 9 10 3 4 4 0 0 2 0 0.0044 0.14 -569 LRP6 low density lipoprotein receptor-related protein 6 1105216 17 14 15 2 6 6 2 0 3 0 0.0044 0.14 -570 VTCN1 V-set domain containing T cell activation inhibitor 1 194656 5 5 5 2 1 3 0 0 1 0 0.0044 0.14 -571 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 244160 7 6 7 1 2 2 2 1 0 0 0.0045 0.14 -572 RP1 retinitis pigmentosa 1 (autosomal dominant) 1441440 24 14 24 4 5 9 7 0 1 2 0.0045 0.14 -573 PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit 366352 9 7 8 2 4 3 1 0 1 0 0.0045 0.14 -574 ZNF540 zinc finger protein 540 445236 12 9 12 1 3 7 2 0 0 0 0.0045 0.14 -575 THAP9 THAP domain containing 9 611380 11 9 11 1 1 3 5 0 2 0 0.0045 0.14 -576 STARD4 StAR-related lipid transfer (START) domain containing 4 142912 4 4 4 0 0 2 1 0 1 0 0.0045 0.14 -577 C6orf97 chromosome 6 open reading frame 97 477344 15 9 15 3 3 7 4 0 1 0 0.0045 0.14 -578 PCDHB7 protocadherin beta 7 495068 13 11 13 8 8 2 2 1 0 0 0.0046 0.14 -579 MUC7 mucin 7, secreted 255808 4 4 3 0 0 1 2 0 1 0 0.0046 0.14 -580 ANKDD1A ankyrin repeat and death domain containing 1A 336224 5 5 5 5 1 2 0 0 2 0 0.0046 0.14 -581 CUBN cubilin (intrinsic factor-cobalamin receptor) 2495088 28 23 28 13 8 14 5 0 1 0 0.0046 0.14 -582 TMEM57 transmembrane protein 57 448980 8 8 8 0 3 2 1 0 2 0 0.0046 0.14 -583 ZFP28 zinc finger protein 28 homolog (mouse) 558600 10 8 9 4 2 5 0 0 3 0 0.0046 0.14 -584 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 762304 18 10 16 2 8 2 2 0 2 4 0.0046 0.14 -585 TASP1 taspase, threonine aspartase, 1 294560 6 5 5 5 1 2 0 0 3 0 0.0046 0.14 -586 CWC27 329448 6 6 6 2 2 2 0 0 2 0 0.0047 0.14 -587 DAPK1 death-associated protein kinase 1 982672 17 15 16 9 7 4 3 0 3 0 0.0047 0.14 -588 ZNF420 zinc finger protein 420 465696 9 8 9 0 1 6 2 0 0 0 0.0047 0.14 -589 PAPD4 PAP associated domain containing 4 338464 9 7 9 0 3 2 2 0 2 0 0.0047 0.14 -590 ZNF585A zinc finger protein 585A 483168 16 10 14 1 7 5 3 0 1 0 0.0047 0.14 -591 C3orf20 chromosome 3 open reading frame 20 619752 12 10 12 1 7 5 0 0 0 0 0.0047 0.14 -592 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 645800 14 11 14 0 3 8 3 0 0 0 0.0048 0.15 -593 ZNF470 zinc finger protein 470 486080 11 8 10 1 2 6 1 1 1 0 0.0048 0.15 -594 ZBP1 Z-DNA binding protein 1 292384 8 7 8 3 1 5 0 1 1 0 0.0048 0.15 -595 SMAD3 SMAD family member 3 293112 9 8 9 0 2 5 1 0 1 0 0.0048 0.15 -596 GALNTL5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 305536 8 8 7 1 2 5 0 0 1 0 0.0048 0.15 -597 GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2 353696 7 7 7 0 1 3 2 0 1 0 0.0049 0.15 -598 DIRAS2 DIRAS family, GTP-binding RAS-like 2 135296 5 5 5 1 3 1 1 0 0 0 0.0049 0.15 -599 HDAC9 histone deacetylase 9 765192 13 11 13 5 2 6 4 0 1 0 0.0049 0.15 -600 KCNA1 potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) 327992 10 8 10 3 7 1 0 1 1 0 0.0049 0.15 -601 VCAM1 vascular cell adhesion molecule 1 505344 9 8 9 1 5 1 3 0 0 0 0.0049 0.15 -602 SYCP1 synaptonemal complex protein 1 682824 14 7 14 2 0 5 4 0 3 2 0.0049 0.15 -603 ARHGAP5 Rho GTPase activating protein 5 1015392 9 9 8 1 1 1 2 0 5 0 0.0050 0.15 -604 WDR47 WD repeat domain 47 417048 5 5 5 0 0 2 1 0 2 0 0.0050 0.15 -605 LINGO2 leucine rich repeat and Ig domain containing 2 408800 8 8 8 2 5 2 0 0 1 0 0.0050 0.15 -606 TUBA3C tubulin, alpha 3c 307552 9 8 9 3 5 2 1 0 1 0 0.0050 0.15 -607 COL6A6 1528808 21 16 21 9 5 11 0 1 2 2 0.0050 0.15 -608 ARV1 ARV1 homolog (S. cerevisiae) 187264 3 3 3 0 0 1 0 0 2 0 0.0050 0.15 -609 MYEF2 myelin expression factor 2 390472 7 7 7 1 2 2 1 0 2 0 0.0050 0.15 -610 ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 247296 8 6 8 1 2 4 1 0 1 0 0.0050 0.15 -611 COMMD5 COMM domain containing 5 129500 4 4 4 1 1 1 1 0 1 0 0.0050 0.15 -612 STS steroid sulfatase (microsomal), isozyme S 396784 7 7 6 0 4 1 0 0 2 0 0.0051 0.15 -613 FN1 fibronectin 1 1710896 22 18 22 10 10 4 5 0 3 0 0.0051 0.15 -614 CTNNA2 catenin (cadherin-associated protein), alpha 2 624064 12 11 12 3 7 2 0 1 2 0 0.0051 0.15 -615 TEK TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal) 776608 11 10 11 1 3 3 2 0 3 0 0.0051 0.15 -616 CSDE1 cold shock domain containing E1, RNA-binding 553056 11 10 11 1 2 5 2 0 2 0 0.0051 0.15 -617 NFASC neurofascin homolog (chicken) 924864 17 15 16 5 10 3 1 0 3 0 0.0052 0.15 -618 SPAG11B sperm associated antigen 11B 90008 3 3 3 0 1 0 0 0 2 0 0.0052 0.15 -619 DGKI diacylglycerol kinase, iota 666260 10 10 10 1 6 4 0 0 0 0 0.0052 0.15 -620 REG3A regenerating islet-derived 3 alpha 122752 3 3 3 1 1 2 0 0 0 0 0.0052 0.15 -621 GBP7 guanylate binding protein 7 438368 8 7 8 1 0 4 2 0 2 0 0.0052 0.15 -622 RPS23 ribosomal protein S23 100352 4 4 4 0 0 3 1 0 0 0 0.0052 0.15 -623 KIF2B kinesin family member 2B 453824 11 10 11 5 6 3 1 0 1 0 0.0052 0.15 -624 MARCH10 membrane-associated ring finger (C3HC4) 10 552608 9 9 9 1 3 1 3 0 2 0 0.0052 0.15 -625 CXCR7 chemokine (C-X-C motif) receptor 7 244832 9 7 9 3 7 2 0 0 0 0 0.0053 0.15 -626 F9 coagulation factor IX (plasma thromboplastic component, Christmas disease, hemophilia B) 317632 6 6 5 1 1 1 1 0 3 0 0.0053 0.15 -627 GPC5 glypican 5 376964 7 7 7 0 5 2 0 0 0 0 0.0053 0.15 -628 ZNF648 zinc finger protein 648 354896 9 9 8 2 6 1 0 1 1 0 0.0053 0.15 -629 GJA10 gap junction protein, alpha 10, 62kDa 366464 10 8 10 1 3 4 2 0 1 0 0.0053 0.15 -630 PREX2 1158608 14 11 14 7 4 4 4 0 2 0 0.0053 0.15 -631 TGIF1 TGFB-induced factor homeobox 1 269612 4 4 4 0 0 0 0 1 3 0 0.0054 0.15 -632 DCC deleted in colorectal carcinoma 999040 16 13 16 5 4 6 5 0 1 0 0.0054 0.15 -633 CLDN8 claudin 8 152768 5 4 5 1 1 0 3 0 1 0 0.0054 0.15 -634 ZNF479 zinc finger protein 479 356384 13 8 13 1 1 11 1 0 0 0 0.0054 0.15 -635 RAMP3 receptor (G protein-coupled) activity modifying protein 3 88928 4 4 4 0 3 0 1 0 0 0 0.0055 0.15 -636 GPR112 G protein-coupled receptor 112 2090632 23 14 23 8 3 12 6 0 2 0 0.0055 0.15 -637 CD300C CD300c molecule 154784 3 3 3 1 0 0 1 1 1 0 0.0055 0.16 -638 PUS7 pseudouridylate synthase 7 homolog (S. cerevisiae) 458304 7 7 7 3 1 2 3 0 1 0 0.0056 0.16 -639 PTPRC protein tyrosine phosphatase, receptor type, C 908096 17 11 17 4 1 8 4 0 4 0 0.0056 0.16 -640 LPHN3 latrophilin 3 923584 17 13 15 5 7 6 3 0 1 0 0.0056 0.16 -641 ZNF492 zinc finger protein 492 348012 8 7 8 0 0 4 4 0 0 0 0.0056 0.16 -642 PTGFR prostaglandin F receptor (FP) 260512 6 6 6 1 1 2 3 0 0 0 0.0056 0.16 -643 TNN tenascin N 848708 17 14 17 8 3 10 3 0 1 0 0.0056 0.16 -644 OR5K3 olfactory receptor, family 5, subfamily K, member 3 217280 5 5 5 2 0 3 1 0 1 0 0.0056 0.16 -645 CNRIP1 cannabinoid receptor interacting protein 1 94392 4 4 3 1 4 0 0 0 0 0 0.0056 0.16 -646 KRTAP19-5 keratin associated protein 19-5 49952 3 3 3 2 2 1 0 0 0 0 0.0057 0.16 -647 CCL27 chemokine (C-C motif) ligand 27 78624 3 3 3 1 1 2 0 0 0 0 0.0057 0.16 -648 KCNK13 potassium channel, subfamily K, member 13 210840 5 5 5 2 2 1 1 0 1 0 0.0057 0.16 -649 PCOLCE2 procollagen C-endopeptidase enhancer 2 282128 8 7 7 2 3 3 2 0 0 0 0.0057 0.16 -650 OR56A4 olfactory receptor, family 56, subfamily A, member 4 246848 5 5 5 0 0 3 1 0 1 0 0.0057 0.16 -651 EPHA7 EPH receptor A7 686560 10 10 9 5 1 4 2 0 3 0 0.0057 0.16 -652 GUCY1A2 guanylate cyclase 1, soluble, alpha 2 449736 12 8 12 3 2 7 1 0 2 0 0.0057 0.16 -653 ZNF184 zinc finger protein 184 509824 12 8 12 1 1 7 1 0 3 0 0.0057 0.16 -654 SLC25A13 solute carrier family 25, member 13 (citrin) 466816 9 8 9 0 2 4 2 0 1 0 0.0057 0.16 -655 NME7 non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase) 264096 5 5 5 0 1 2 0 0 2 0 0.0057 0.16 -656 OR5AP2 olfactory receptor, family 5, subfamily AP, member 2 213920 5 5 5 0 1 2 2 0 0 0 0.0058 0.16 -657 MCOLN3 mucolipin 3 383040 9 7 9 0 0 4 4 0 1 0 0.0058 0.16 -658 GEM GTP binding protein overexpressed in skeletal muscle 203168 6 6 6 1 3 1 0 1 1 0 0.0058 0.16 -659 LRRC4C leucine rich repeat containing 4C 431648 8 7 8 6 2 3 0 0 3 0 0.0058 0.16 -660 ZFP161 zinc finger protein 161 homolog (mouse) 303436 4 4 3 2 0 0 2 0 2 0 0.0058 0.16 -661 GRIK2 glutamate receptor, ionotropic, kainate 2 636832 14 9 13 5 6 2 4 0 2 0 0.0058 0.16 -662 CST9 cystatin 9 (testatin) 109312 3 3 3 1 0 1 2 0 0 0 0.0059 0.16 -663 C10orf96 chromosome 10 open reading frame 96 181216 4 4 4 0 1 2 1 0 0 0 0.0059 0.16 -664 CALCA calcitonin-related polypeptide alpha 134848 4 4 4 0 1 1 2 0 0 0 0.0059 0.16 -665 TRDN triadin 422264 7 6 7 2 1 2 1 0 3 0 0.0059 0.16 -666 TCTEX1D2 Tctex1 domain containing 2 100576 3 3 3 0 0 3 0 0 0 0 0.0059 0.16 -667 KCND3 potassium voltage-gated channel, Shal-related subfamily, member 3 442400 12 11 11 4 9 1 1 0 1 0 0.0059 0.16 -668 PON1 paraoxonase 1 247296 6 5 6 0 2 1 1 0 2 0 0.0059 0.16 -669 ZNF471 zinc finger protein 471 424928 11 8 10 1 0 7 4 0 0 0 0.0059 0.16 -670 BCLAF1 BCL2-associated transcription factor 1 628600 11 8 10 2 0 6 1 0 4 0 0.0060 0.16 -671 FMO3 flavin containing monooxygenase 3 365344 11 8 10 2 2 6 2 0 1 0 0.0060 0.16 -672 MAGEB1 melanoma antigen family B, 1 234752 6 6 6 3 3 1 2 0 0 0 0.0060 0.16 -673 TGFBR1 transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kDa) 324128 9 7 8 1 5 1 2 0 1 0 0.0060 0.16 -674 KERA keratocan 239008 7 6 7 1 1 2 4 0 0 0 0.0060 0.16 -675 BLID BH3-like motif containing, cell death inducer 74060 3 3 3 1 0 1 1 0 1 0 0.0060 0.16 -676 AKR1C2 aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III) 191752 4 4 4 1 0 0 2 0 2 0 0.0061 0.16 -677 WDFY3 WD repeat and FYVE domain containing 3 2438016 30 20 30 3 6 11 8 0 5 0 0.0061 0.16 -678 DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 638400 9 8 9 0 3 2 2 0 2 0 0.0061 0.16 -679 ZNF793 zinc finger protein 793 277004 5 5 5 0 0 1 2 0 2 0 0.0061 0.16 -680 SPINK7 serine peptidase inhibitor, Kazal type 7 (putative) 61376 2 2 2 0 0 1 0 0 1 0 0.0061 0.16 -681 CD40LG CD40 ligand (TNF superfamily, member 5, hyper-IgM syndrome) 180544 6 4 6 2 2 2 1 0 1 0 0.0061 0.16 -682 CXCL11 chemokine (C-X-C motif) ligand 11 67424 3 3 3 0 0 0 3 0 0 0 0.0062 0.16 -683 SPATA16 spermatogenesis associated 16 392000 7 7 7 1 3 3 1 0 0 0 0.0062 0.16 -684 TRHR thyrotropin-releasing hormone receptor 269920 8 6 8 0 0 3 4 0 1 0 0.0062 0.16 -685 TMEM105 transmembrane protein 105 76552 3 3 3 0 1 0 0 0 2 0 0.0062 0.16 -686 OR5M3 olfactory receptor, family 5, subfamily M, member 3 207872 5 5 5 2 1 1 3 0 0 0 0.0062 0.16 -687 AKT1S1 AKT1 substrate 1 (proline-rich) 99516 3 3 3 0 0 1 0 0 2 0 0.0062 0.16 -688 ACOT12 acyl-CoA thioesterase 12 357728 9 7 9 1 2 4 0 0 3 0 0.0062 0.16 -689 RUVBL1 RuvB-like 1 (E. coli) 316960 8 8 6 1 6 2 0 0 0 0 0.0063 0.16 -690 XRCC2 X-ray repair complementing defective repair in Chinese hamster cells 2 191520 5 5 5 0 1 1 3 0 0 0 0.0063 0.16 -691 FUT9 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) 242816 5 5 5 1 1 2 1 0 1 0 0.0063 0.16 -692 SLITRK4 SLIT and NTRK-like family, member 4 564032 8 8 8 2 2 3 2 0 1 0 0.0063 0.16 -693 APLP1 amyloid beta (A4) precursor-like protein 1 411560 10 10 10 2 9 0 1 0 0 0 0.0063 0.17 -694 PLEK pleckstrin 243936 6 6 6 0 2 1 3 0 0 0 0.0064 0.17 -695 LCA5 Leber congenital amaurosis 5 475328 9 8 9 2 2 4 1 0 2 0 0.0064 0.17 -696 CHL1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 846496 18 13 18 5 5 7 6 0 0 0 0.0064 0.17 -697 OR5F1 olfactory receptor, family 5, subfamily F, member 1 212576 8 5 8 3 0 5 2 0 1 0 0.0064 0.17 -698 LEPROTL1 leptin receptor overlapping transcript-like 1 87808 3 3 3 0 2 0 0 0 1 0 0.0064 0.17 -699 TMEM176B transmembrane protein 176B 187488 5 5 5 0 1 2 1 0 1 0 0.0065 0.17 -700 CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 123844 3 3 3 0 0 0 0 0 3 0 0.0065 0.17 -701 MYF5 myogenic factor 5 174720 4 4 4 4 2 0 1 0 1 0 0.0065 0.17 -702 YTHDC2 YTH domain containing 2 979752 14 12 13 0 6 1 4 0 3 0 0.0065 0.17 -703 PDZD2 PDZ domain containing 2 1922676 25 20 25 5 12 5 3 0 5 0 0.0065 0.17 -704 NOLC1 nucleolar and coiled-body phosphoprotein 1 476000 8 7 7 2 3 2 0 0 3 0 0.0066 0.17 -705 VAV1 vav 1 guanine nucleotide exchange factor 556664 13 11 13 3 6 5 1 0 1 0 0.0066 0.17 -706 TSG101 tumor susceptibility gene 101 271712 4 4 4 0 0 2 0 0 2 0 0.0066 0.17 -707 NR3C2 nuclear receptor subfamily 3, group C, member 2 659296 11 10 11 3 5 3 2 0 1 0 0.0066 0.17 -708 LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 496592 7 7 7 1 2 0 1 0 4 0 0.0066 0.17 -709 C6 complement component 6 643552 13 11 13 3 4 6 2 0 1 0 0.0067 0.17 -710 OR8I2 olfactory receptor, family 8, subfamily I, member 2 209888 3 3 3 1 0 0 0 0 3 0 0.0068 0.17 -711 C10orf81 chromosome 10 open reading frame 81 254464 3 3 3 1 0 0 2 0 1 0 0.0068 0.17 -712 NME6 non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) 135872 4 4 4 1 2 1 0 0 1 0 0.0068 0.17 -713 CLYBL citrate lyase beta like 221536 6 6 6 0 1 2 2 1 0 0 0.0068 0.17 -714 TCP11L2 t-complex 11 (mouse)-like 2 357504 5 5 5 0 0 0 3 0 2 0 0.0069 0.17 -715 WDR17 WD repeat domain 17 915936 15 11 15 2 4 5 2 0 2 2 0.0069 0.17 -716 HMG20A high-mobility group 20A 241024 5 5 4 0 0 4 1 0 0 0 0.0069 0.17 -717 PCDHGA2 protocadherin gamma subfamily A, 2 641312 14 12 14 6 5 1 5 1 2 0 0.0069 0.17 -718 ZNF337 zinc finger protein 337 508928 8 8 8 1 2 1 3 0 2 0 0.0069 0.17 -719 CPB1 carboxypeptidase B1 (tissue) 290752 5 5 5 0 4 1 0 0 0 0 0.0069 0.17 -720 VN1R2 vomeronasal 1 receptor 2 242120 6 6 6 0 1 3 2 0 0 0 0.0069 0.17 -721 CCDC60 coiled-coil domain containing 60 382816 8 7 7 0 4 2 1 0 1 0 0.0070 0.17 -722 GLRX3 glutaredoxin 3 214144 5 5 5 0 1 2 2 0 0 0 0.0070 0.17 -723 FAM5B family with sequence similarity 5, member B 530012 14 11 13 7 8 4 2 0 0 0 0.0070 0.17 -724 EXT1 exostoses (multiple) 1 510580 11 10 11 1 4 4 3 0 0 0 0.0070 0.17 -725 MAMLD1 mastermind-like domain containing 1 527192 11 9 11 3 4 4 1 0 2 0 0.0070 0.17 -726 ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 795608 13 12 12 4 5 5 3 0 0 0 0.0071 0.18 -727 SPRED1 sprouty-related, EVH1 domain containing 1 305312 7 6 7 1 2 3 0 0 2 0 0.0071 0.18 -728 NMS neuromedin S 112448 4 4 4 0 1 1 2 0 0 0 0.0071 0.18 -729 QKI quaking homolog, KH domain RNA binding (mouse) 260288 8 6 8 3 2 1 3 0 2 0 0.0071 0.18 -730 EIF3J eukaryotic translation initiation factor 3, subunit J 148596 4 4 4 1 0 1 2 0 1 0 0.0072 0.18 -731 FAM163A 97716 4 4 4 0 1 1 1 0 1 0 0.0072 0.18 -732 DNM1L dynamin 1-like 513184 8 8 8 0 2 3 1 0 2 0 0.0072 0.18 -733 BMPR1B bone morphogenetic protein receptor, type IB 344800 10 7 10 1 3 3 3 0 1 0 0.0073 0.18 -734 CYP4B1 cytochrome P450, family 4, subfamily B, polypeptide 1 355488 9 9 8 3 2 4 3 0 0 0 0.0073 0.18 -735 PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 145632 6 5 6 2 3 3 0 0 0 0 0.0073 0.18 -736 CTNNA3 catenin (cadherin-associated protein), alpha 3 617344 9 9 9 5 1 5 1 0 2 0 0.0073 0.18 -737 FNDC1 fibronectin type III domain containing 1 1096784 23 16 22 2 10 10 1 0 2 0 0.0073 0.18 -738 MS4A5 membrane-spanning 4-domains, subfamily A, member 5 139552 6 4 6 0 2 3 1 0 0 0 0.0074 0.18 -739 C20orf186 chromosome 20 open reading frame 186 402752 7 7 7 2 2 3 1 1 0 0 0.0074 0.18 -740 HAND2 heart and neural crest derivatives expressed 2 89740 3 3 3 1 1 0 0 0 2 0 0.0075 0.18 -741 CYP3A7 cytochrome P450, family 3, subfamily A, polypeptide 7 350336 7 6 7 2 2 1 2 0 0 2 0.0075 0.18 -742 PFKFB1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 327008 7 7 7 1 2 5 0 0 0 0 0.0076 0.18 -743 GRM5 glutamate receptor, metabotropic 5 701428 11 11 11 7 3 4 2 1 1 0 0.0076 0.18 -744 CTCF CCCTC-binding factor (zinc finger protein) 498176 9 9 9 0 5 2 1 1 0 0 0.0076 0.18 -745 NLRP5 NLR family, pyrin domain containing 5 793228 13 12 12 3 8 2 2 0 1 0 0.0077 0.19 -746 C6orf211 chromosome 6 open reading frame 211 301084 5 5 5 0 0 2 0 0 3 0 0.0077 0.19 -747 IPO8 importin 8 719936 13 10 13 4 3 7 1 0 2 0 0.0077 0.19 -748 SEMG2 semenogelin II 393568 5 5 5 1 2 1 0 0 2 0 0.0077 0.19 -749 TMEM217 157248 5 5 4 0 1 2 2 0 0 0 0.0077 0.19 -750 AGA aspartylglucosaminidase 241248 5 5 5 1 1 1 2 0 1 0 0.0077 0.19 -751 ZNF528 zinc finger protein 528 426272 10 8 9 3 5 3 1 0 1 0 0.0078 0.19 -752 ZNF292 zinc finger protein 292 1806032 23 16 23 5 4 6 8 0 5 0 0.0078 0.19 -753 PRSS3 protease, serine, 3 171136 4 4 4 0 0 3 0 0 1 0 0.0078 0.19 -754 SLC12A9 solute carrier family 12 (potassium/chloride transporters), member 9 564712 9 9 9 1 1 4 2 0 2 0 0.0079 0.19 -755 MESDC2 mesoderm development candidate 2 154168 4 4 4 1 0 3 1 0 0 0 0.0079 0.19 -756 TP63 tumor protein p63 507136 10 9 10 2 5 1 1 0 1 2 0.0079 0.19 -757 NUP107 nucleoporin 107kDa 647360 12 9 12 0 3 3 3 0 3 0 0.0079 0.19 -758 CD93 CD93 molecule 418572 8 7 7 1 2 1 1 1 3 0 0.0080 0.19 -759 HIST1H2BA histone cluster 1, H2ba 86912 4 4 4 0 4 0 0 0 0 0 0.0080 0.19 -760 SLC25A12 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 472416 9 9 9 0 5 1 2 0 1 0 0.0080 0.19 -761 DDI1 DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae) 266840 9 9 8 0 5 3 1 0 0 0 0.0080 0.19 -762 TOX4 TOX high mobility group box family member 4 426048 6 6 6 2 0 1 4 0 1 0 0.0081 0.19 -763 C14orf50 chromosome 14 open reading frame 50 285080 4 4 4 0 1 0 1 0 2 0 0.0081 0.19 -764 SLC30A8 solute carrier family 30 (zinc transporter), member 8 255808 6 6 6 3 2 2 1 1 0 0 0.0081 0.19 -765 TSPAN5 tetraspanin 5 187936 5 5 5 1 0 2 2 0 1 0 0.0081 0.19 -766 SLITRK6 SLIT and NTRK-like family, member 6 566720 12 9 12 0 1 7 2 0 2 0 0.0081 0.19 -767 SLC24A2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 450152 7 7 6 2 4 2 0 0 1 0 0.0082 0.19 -768 IVL involucrin 264688 4 4 4 2 0 3 1 0 0 0 0.0082 0.19 -769 ASTN2 astrotactin 2 823400 14 12 14 7 10 1 2 0 1 0 0.0082 0.19 -770 EXTL2 exostoses (multiple)-like 2 226016 6 5 6 0 0 3 3 0 0 0 0.0082 0.19 -771 BRSK1 BR serine/threonine kinase 1 442288 9 8 9 3 1 2 1 0 5 0 0.0082 0.19 -772 SETX senataxin 1821120 21 15 20 4 7 4 5 0 3 2 0.0083 0.19 -773 TREM1 triggering receptor expressed on myeloid cells 1 161504 5 5 5 0 2 2 1 0 0 0 0.0083 0.19 -774 TOX thymocyte selection-associated high mobility group box 362208 10 8 9 1 3 3 4 0 0 0 0.0084 0.19 -775 SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 211456 5 4 5 2 0 3 0 0 0 2 0.0084 0.20 -776 ZNF14 zinc finger protein 14 435680 9 5 7 0 0 1 0 0 1 7 0.0084 0.20 -777 GPR34 G protein-coupled receptor 34 257600 6 6 6 0 3 0 1 0 2 0 0.0085 0.20 -778 DENND2C DENN/MADD domain containing 2C 601216 9 9 9 1 3 3 2 0 1 0 0.0085 0.20 -779 MTFR1 mitochondrial fission regulator 1 232960 5 5 5 0 3 1 0 0 1 0 0.0085 0.20 -780 OR51A7 olfactory receptor, family 51, subfamily A, member 7 211232 5 5 5 2 0 3 2 0 0 0 0.0085 0.20 -781 SENP7 SUMO1/sentrin specific peptidase 7 727776 11 8 11 5 2 5 2 0 2 0 0.0085 0.20 -782 ZNF98 zinc finger protein 98 (F7175) 374884 9 6 9 3 0 5 1 0 3 0 0.0086 0.20 -783 MBOAT1 membrane bound O-acyltransferase domain containing 1 344960 8 7 8 0 3 3 0 0 2 0 0.0086 0.20 -784 SLITRK5 SLIT and NTRK-like family, member 5 632744 9 9 9 4 2 4 3 0 0 0 0.0086 0.20 -785 PATE2 80192 2 2 2 1 0 0 1 0 1 0 0.0086 0.20 -786 PALMD palmdelphin 378112 7 6 7 2 2 3 0 0 2 0 0.0087 0.20 -787 PXDNL peroxidasin homolog (Drosophila)-like 891600 15 12 14 4 9 3 2 0 1 0 0.0087 0.20 -788 PEG3 paternally expressed 3 1075424 22 13 22 4 4 12 3 0 3 0 0.0087 0.20 -789 FGF14 fibroblast growth factor 14 205968 5 5 4 1 4 0 0 0 1 0 0.0088 0.20 -790 IGSF5 immunoglobulin superfamily, member 5 258048 8 7 8 0 4 3 1 0 0 0 0.0088 0.20 -791 TTC14 tetratricopeptide repeat domain 14 526616 8 7 8 1 2 0 2 0 4 0 0.0088 0.20 -792 SESN3 sestrin 3 333368 6 5 6 0 1 3 0 0 2 0 0.0088 0.20 -793 ZNF385D zinc finger protein 385D 273280 9 8 9 2 4 4 1 0 0 0 0.0089 0.20 -794 PTDSS1 phosphatidylserine synthase 1 330176 7 7 7 0 0 2 4 0 1 0 0.0091 0.21 -795 ZIK1 zinc finger protein interacting with K protein 1 homolog (mouse) 328412 8 7 8 0 3 5 0 0 0 0 0.0091 0.21 -796 GABRA2 gamma-aminobutyric acid (GABA) A receptor, alpha 2 311808 9 7 9 0 1 6 2 0 0 0 0.0092 0.21 -797 ARFIP1 ADP-ribosylation factor interacting protein 1 (arfaptin 1) 258496 5 5 5 0 4 0 1 0 0 0 0.0092 0.21 -798 OR1N2 olfactory receptor, family 1, subfamily N, member 2 223328 5 5 5 1 0 1 2 0 2 0 0.0092 0.21 -799 GRID2 glutamate receptor, ionotropic, delta 2 691712 12 12 12 5 4 4 4 0 0 0 0.0092 0.21 -800 OR2T8 olfactory receptor, family 2, subfamily T, member 8 201576 5 5 5 1 1 2 2 0 0 0 0.0093 0.21 -801 OR8J1 olfactory receptor, family 8, subfamily J, member 1 213920 6 5 6 0 1 4 1 0 0 0 0.0093 0.21 -802 TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 369376 7 7 6 2 4 1 0 0 2 0 0.0093 0.21 -803 PCCA propionyl Coenzyme A carboxylase, alpha polypeptide 480408 9 7 9 3 4 2 2 0 1 0 0.0094 0.21 -804 NT5C3L 5'-nucleotidase, cytosolic III-like 197820 4 4 3 2 0 0 1 0 3 0 0.0094 0.21 -805 USP31 ubiquitin specific peptidase 31 804384 13 12 12 1 6 2 2 0 3 0 0.0094 0.21 -806 UNC13B unc-13 homolog B (C. elegans) 1098944 13 12 13 5 2 4 5 0 2 0 0.0094 0.21 -807 AQPEP 662116 13 11 12 2 6 3 3 0 1 0 0.0095 0.21 -808 DTWD1 DTW domain containing 1 208544 4 4 4 0 0 2 0 0 2 0 0.0095 0.21 -809 FPR2 formyl peptide receptor 2 237440 6 5 6 1 2 3 1 0 0 0 0.0095 0.21 -810 AGTR2 angiotensin II receptor, type 2 245504 5 5 5 1 1 1 3 0 0 0 0.0095 0.21 -811 C10orf11 chromosome 10 open reading frame 11 139104 4 4 4 0 1 2 0 0 1 0 0.0095 0.21 -812 SEL1L2 sel-1 suppressor of lin-12-like 2 (C. elegans) 480928 10 9 10 4 1 3 6 0 0 0 0.0095 0.21 -813 ZNF121 zinc finger protein 121 264544 7 6 7 1 2 4 1 0 0 0 0.0096 0.21 -814 LRFN5 leucine rich repeat and fibronectin type III domain containing 5 487424 9 8 9 4 2 2 5 0 0 0 0.0096 0.21 -815 ADHFE1 alcohol dehydrogenase, iron containing, 1 312928 6 6 6 3 2 3 1 0 0 0 0.0096 0.21 -816 PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2) 97888 4 4 4 0 1 1 1 0 1 0 0.0096 0.21 -817 CREBBP CREB binding protein (Rubinstein-Taybi syndrome) 1617968 25 19 25 8 9 5 6 0 5 0 0.0097 0.21 -818 SCN2A sodium channel, voltage-gated, type II, alpha subunit 1387120 22 16 22 7 9 7 4 0 2 0 0.0097 0.21 -819 CXCR4 chemokine (C-X-C motif) receptor 4 245056 4 4 4 1 1 2 0 0 1 0 0.0097 0.21 -820 USP28 ubiquitin specific peptidase 28 733152 11 11 11 0 1 7 3 0 0 0 0.0097 0.21 -821 HTRA1 HtrA serine peptidase 1 219968 7 6 7 1 1 4 2 0 0 0 0.0098 0.21 -822 CRYL1 crystallin, lambda 1 212128 5 5 5 0 3 2 0 0 0 0 0.0099 0.22 -823 CBX3 chromobox homolog 3 (HP1 gamma homolog, Drosophila) 128128 3 3 3 0 1 1 0 0 1 0 0.0099 0.22 -824 ZFP57 zinc finger protein 57 homolog (mouse) 239288 5 5 5 0 0 1 1 0 3 0 0.0099 0.22 -825 ZNF350 zinc finger protein 350 360752 7 7 6 1 2 3 1 0 1 0 0.0099 0.22 -826 DNAH11 dynein, axonemal, heavy chain 11 3069736 37 18 37 10 5 12 9 1 3 7 0.0100 0.22 -827 OPHN1 oligophrenin 1 553288 7 5 7 1 1 1 2 0 3 0 0.010 0.22 -828 ESX1 ESX homeobox 1 239036 6 6 6 4 2 2 2 0 0 0 0.010 0.22 -829 FILIP1 filamin A interacting protein 1 820288 11 11 11 6 3 5 2 0 1 0 0.010 0.22 -830 TMED2 transmembrane emp24 domain trafficking protein 2 139328 4 4 4 0 0 2 1 0 1 0 0.010 0.22 -831 ZNF28 zinc finger protein 28 448448 8 7 8 3 1 3 2 0 2 0 0.010 0.22 -832 ZNF781 zinc finger protein 781 221312 5 5 5 0 2 1 0 0 2 0 0.010 0.22 -833 MAGEC1 melanoma antigen family C, 1 769888 16 10 16 5 0 12 4 0 0 0 0.010 0.22 -834 MRPS36 mitochondrial ribosomal protein S36 73472 2 2 2 0 1 0 1 0 0 0 0.010 0.22 -835 TRIM33 tripartite motif-containing 33 665896 9 8 9 1 1 4 2 0 2 0 0.010 0.22 -836 FBXO15 F-box protein 15 299712 6 6 6 1 4 1 1 0 0 0 0.010 0.22 -837 WSCD2 WSC domain containing 2 386568 8 8 8 7 6 1 0 0 1 0 0.010 0.22 -838 KCNJ1 potassium inwardly-rectifying channel, subfamily J, member 1 249844 5 5 5 0 2 2 1 0 0 0 0.010 0.22 -839 CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1 346584 7 7 7 0 3 2 2 0 0 0 0.010 0.22 -840 PCDHB3 protocadherin beta 3 495236 15 11 15 5 6 5 2 0 0 2 0.010 0.22 -841 POGK pogo transposable element with KRAB domain 412144 8 7 8 0 2 2 1 1 2 0 0.010 0.22 -842 CTSF cathepsin F 273140 5 5 5 2 1 1 0 0 3 0 0.010 0.22 -843 ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 718680 18 13 18 5 10 4 3 0 1 0 0.011 0.22 -844 STK31 serine/threonine kinase 31 706944 10 8 10 1 0 5 4 0 1 0 0.011 0.22 -845 BNC1 basonuclin 1 650048 14 10 14 3 3 6 3 0 0 2 0.011 0.23 -846 PPP1R12B protein phosphatase 1, regulatory (inhibitor) subunit 12B 701968 9 8 8 0 4 1 0 0 4 0 0.011 0.23 -847 CCDC141 coiled-coil domain containing 141 599424 14 9 14 2 2 6 4 0 2 0 0.011 0.23 -848 ZAR1 zygote arrest 1 73976 3 3 3 1 0 3 0 0 0 0 0.011 0.23 -849 GMPPA GDP-mannose pyrophosphorylase A 282240 7 6 7 0 2 1 2 0 2 0 0.011 0.23 -850 TRIM42 tripartite motif-containing 42 491008 8 8 8 3 5 0 1 0 2 0 0.011 0.23 -851 FHL5 four and a half LIM domains 5 196000 4 4 4 0 1 0 3 0 0 0 0.011 0.23 -852 UBQLN3 ubiquilin 3 440804 10 8 10 0 3 6 0 0 1 0 0.011 0.23 -853 CD200R1L 188160 3 3 3 1 0 0 2 0 1 0 0.011 0.23 -854 OR5D18 olfactory receptor, family 5, subfamily D, member 18 211904 5 5 5 1 1 4 0 0 0 0 0.011 0.23 -855 HAPLN1 hyaluronan and proteoglycan link protein 1 242144 6 6 6 4 3 3 0 0 0 0 0.011 0.23 -856 SORT1 sortilin 1 507584 7 7 7 2 0 3 1 1 2 0 0.011 0.23 -857 THBS2 thrombospondin 2 775608 15 12 15 8 9 4 1 0 1 0 0.011 0.23 -858 FAM114A1 family with sequence similarity 114, member A1 390656 8 7 8 0 2 3 1 0 2 0 0.011 0.23 -859 AQP9 aquaporin 9 204288 5 4 5 2 2 2 0 0 1 0 0.011 0.23 -860 C1orf189 chromosome 1 open reading frame 189 72128 3 3 3 0 0 2 1 0 0 0 0.011 0.23 -861 BEND7 332864 5 5 5 2 1 1 2 0 1 0 0.011 0.23 -862 IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 122752 5 3 5 0 1 1 2 0 1 0 0.011 0.23 -863 MYOT myotilin 343392 8 6 8 1 2 2 4 0 0 0 0.011 0.23 -864 IL1R2 interleukin 1 receptor, type II 275296 7 6 7 1 2 2 3 0 0 0 0.011 0.23 -865 BEND2 520576 10 9 10 2 2 5 3 0 0 0 0.011 0.23 -866 KCNA10 potassium voltage-gated channel, shaker-related subfamily, member 10 344960 9 8 9 3 3 5 0 0 1 0 0.011 0.23 -867 SLC9A11 solute carrier family 9, member 11 780192 16 10 16 1 2 7 6 0 1 0 0.011 0.23 -868 TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 762944 10 9 10 1 2 2 4 0 2 0 0.011 0.23 -869 S1PR1 250964 7 7 7 0 3 1 3 0 0 0 0.011 0.23 -870 HMGXB4 408464 6 5 5 2 1 2 1 0 2 0 0.011 0.23 -871 PRMT10 574056 7 7 7 1 1 2 1 0 3 0 0.011 0.23 -872 HAS1 hyaluronan synthase 1 265764 7 7 7 3 5 2 0 0 0 0 0.011 0.23 -873 FBXW11 F-box and WD repeat domain containing 11 384440 8 8 8 0 4 3 1 0 0 0 0.011 0.23 -874 ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 541856 10 7 10 2 1 4 1 0 4 0 0.011 0.23 -875 PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa 441952 9 9 9 3 4 3 1 0 1 0 0.011 0.23 -876 FAM9B family with sequence similarity 9, member B 131936 4 4 4 0 0 2 0 0 2 0 0.011 0.23 -877 YSK4 yeast Sps1/Ste20-related kinase 4 (S. cerevisiae) 901124 16 11 16 2 1 9 4 0 2 0 0.011 0.23 -878 ARID1B AT rich interactive domain 1B (SWI1-like) 613464 11 9 11 1 6 2 0 0 3 0 0.011 0.23 -879 CDCP2 CUB domain containing protein 2 297500 6 5 6 0 1 3 0 0 2 0 0.011 0.23 -880 LRRC7 leucine rich repeat containing 7 1055936 20 12 19 4 8 6 5 0 1 0 0.011 0.23 -881 DUSP6 dual specificity phosphatase 6 225036 5 5 5 0 0 3 0 0 2 0 0.011 0.23 -882 C6orf10 chromosome 6 open reading frame 10 256984 6 5 6 1 3 1 1 0 1 0 0.011 0.23 -883 FAM126A family with sequence similarity 126, member A 359744 6 6 6 1 1 3 1 0 1 0 0.011 0.23 -884 NIPA2 non imprinted in Prader-Willi/Angelman syndrome 2 247072 5 5 5 0 2 0 3 0 0 0 0.011 0.23 -885 CBLB Cas-Br-M (murine) ecotropic retroviral transforming sequence b 676704 8 8 8 0 1 5 1 0 1 0 0.011 0.23 -886 GPC3 glypican 3 385544 7 7 7 1 1 3 3 0 0 0 0.011 0.23 -887 DKK1 dickkopf homolog 1 (Xenopus laevis) 177860 5 5 5 0 2 1 2 0 0 0 0.011 0.23 -888 AMOT angiomotin 430928 5 5 5 1 1 0 0 0 4 0 0.012 0.23 -889 FAM47A family with sequence similarity 47, member A 533120 11 9 11 5 9 1 1 0 0 0 0.012 0.23 -890 GRM1 glutamate receptor, metabotropic 1 819140 12 12 12 8 7 2 2 0 1 0 0.012 0.23 -891 MBD3L1 methyl-CpG binding domain protein 3-like 1 131936 5 5 5 0 2 2 1 0 0 0 0.012 0.23 -892 ZNF415 zinc finger protein 415 376320 7 6 7 2 1 1 3 1 1 0 0.012 0.23 -893 IFIT1 interferon-induced protein with tetratricopeptide repeats 1 323680 6 6 6 0 2 1 1 0 2 0 0.012 0.23 -894 IFNA2 interferon, alpha 2 127904 4 4 4 0 0 3 1 0 0 0 0.012 0.23 -895 EHD3 EH-domain containing 3 365568 9 9 8 3 7 0 1 1 0 0 0.012 0.23 -896 AXIN2 axin 2 (conductin, axil) 564840 9 9 9 1 2 3 1 0 3 0 0.012 0.23 -897 MXD1 MAX dimerization protein 1 144088 3 3 3 1 1 0 0 0 2 0 0.012 0.23 -898 ADORA1 adenosine A1 receptor 221536 8 7 8 0 4 4 0 0 0 0 0.012 0.24 -899 NT5C1B 5'-nucleotidase, cytosolic IB 417704 10 9 10 2 5 1 3 0 1 0 0.012 0.24 -900 CRISP1 cysteine-rich secretory protein 1 174272 4 4 4 2 1 3 0 0 0 0 0.012 0.24 -901 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) 270000 4 4 4 2 1 0 0 0 3 0 0.012 0.24 -902 TF transferrin 479612 11 9 11 2 6 3 1 0 1 0 0.012 0.24 -903 RNF175 ring finger protein 175 210344 4 4 4 1 1 1 1 0 1 0 0.012 0.24 -904 OR14C36 olfactory receptor, family 14, subfamily C, member 36 204176 3 3 3 0 0 2 0 0 1 0 0.012 0.24 -905 RGS13 regulator of G-protein signaling 13 111104 3 3 3 1 0 2 1 0 0 0 0.012 0.24 -906 HBE1 hemoglobin, epsilon 1 102144 3 3 3 1 0 0 2 0 1 0 0.012 0.24 -907 PSG7 pregnancy specific beta-1-glycoprotein 7 287616 5 5 5 0 1 2 1 0 1 0 0.012 0.24 -908 EBF3 early B-cell factor 3 355456 7 6 6 1 2 2 0 0 3 0 0.012 0.24 -909 PLGLB2 plasminogen-like B2 48384 1 1 1 0 0 0 0 0 1 0 0.012 0.24 -910 CMTM2 CKLF-like MARVEL transmembrane domain containing 2 170912 4 4 4 0 0 2 1 0 1 0 0.012 0.24 -911 PSG9 pregnancy specific beta-1-glycoprotein 9 292320 7 7 7 2 6 1 0 0 0 0 0.012 0.24 -912 FSHB follicle stimulating hormone, beta polypeptide 89152 2 2 2 0 0 0 0 0 2 0 0.012 0.24 -913 SLC2A7 solute carrier family 2 (facilitated glucose transporter), member 7 319724 8 8 7 2 5 2 1 0 0 0 0.012 0.24 -914 PRSS12 protease, serine, 12 (neurotrypsin, motopsin) 536160 8 8 8 1 3 2 1 0 2 0 0.012 0.24 -915 LNX2 ligand of numb-protein X 2 472416 8 8 8 0 3 2 2 0 1 0 0.012 0.24 -916 C11orf63 chromosome 11 open reading frame 63 544992 7 7 7 6 2 0 3 0 2 0 0.012 0.24 -917 UGP2 UDP-glucose pyrophosphorylase 2 351008 7 6 7 1 2 2 2 0 1 0 0.012 0.24 -918 C5orf49 75740 3 3 3 0 1 1 0 1 0 0 0.012 0.24 -919 PABPC5 poly(A) binding protein, cytoplasmic 5 258272 6 6 6 2 2 2 1 0 1 0 0.013 0.25 -920 BCL7A B-cell CLL/lymphoma 7A 153216 6 5 5 2 4 1 0 0 1 0 0.013 0.25 -921 C3orf30 chromosome 3 open reading frame 30 363552 6 5 6 0 1 3 2 0 0 0 0.013 0.25 -922 ZNF264 zinc finger protein 264 424760 9 8 9 1 5 2 1 1 0 0 0.013 0.25 -923 OR10J3 olfactory receptor, family 10, subfamily J, member 3 222656 6 5 6 1 0 4 2 0 0 0 0.013 0.25 -924 SMC4 structural maintenance of chromosomes 4 854784 13 10 12 2 4 1 6 0 2 0 0.013 0.25 -925 UGT3A1 UDP glycosyltransferase 3 family, polypeptide A1 354704 7 6 7 1 2 3 1 0 1 0 0.013 0.25 -926 CSNK1A1L casein kinase 1, alpha 1-like 228032 5 5 5 4 0 2 2 0 1 0 0.013 0.25 -927 NBEA neurobeachin 1937756 24 14 24 2 3 8 8 0 3 2 0.013 0.25 -928 DHX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 952672 14 11 14 1 5 5 2 0 2 0 0.013 0.25 -929 BMP5 bone morphogenetic protein 5 311948 5 5 5 1 4 0 0 0 1 0 0.013 0.25 -930 STAC SH3 and cysteine rich domain 273112 6 6 6 3 2 2 2 0 0 0 0.013 0.25 -931 OSMR oncostatin M receptor 676032 6 6 6 1 1 3 0 0 2 0 0.013 0.25 -932 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 254464 5 5 5 3 0 2 3 0 0 0 0.013 0.25 -933 RALYL RALY RNA binding protein-like 190592 5 5 5 2 1 3 0 0 1 0 0.013 0.25 -934 MARK1 MAP/microtubule affinity-regulating kinase 1 542780 10 9 10 2 2 7 0 0 1 0 0.013 0.25 -935 BNC2 basonuclin 2 745472 13 11 12 3 7 0 4 0 2 0 0.013 0.25 -936 TPO thyroid peroxidase 552692 11 11 10 3 7 4 0 0 0 0 0.013 0.25 -937 METTL6 methyltransferase like 6 196000 8 5 7 1 1 4 2 0 1 0 0.013 0.25 -938 FAM184A 772048 16 10 15 2 3 10 1 0 2 0 0.013 0.25 -939 OTUD6B OTU domain containing 6B 219512 4 4 4 0 0 0 1 0 3 0 0.013 0.25 -940 ZDBF2 zinc finger, DBF-type containing 2 1585248 33 13 33 7 5 16 5 0 4 3 0.013 0.25 -941 MNS1 meiosis-specific nuclear structural 1 342272 6 6 6 0 1 1 1 0 3 0 0.013 0.25 -942 OR10G4 olfactory receptor, family 10, subfamily G, member 4 210560 5 5 5 3 3 1 1 0 0 0 0.013 0.25 -943 WDR64 WD repeat domain 64 445536 10 8 10 1 0 5 3 0 0 2 0.013 0.25 -944 FSHR follicle stimulating hormone receptor 476672 7 7 7 3 1 3 1 1 1 0 0.013 0.25 -945 PRMT8 protein arginine methyltransferase 8 274400 5 5 5 3 2 1 1 0 1 0 0.013 0.25 -946 ZCCHC6 zinc finger, CCHC domain containing 6 1028608 9 8 9 1 2 4 0 0 3 0 0.013 0.25 -947 MARCKSL1 MARCKS-like 1 118132 3 3 2 0 0 1 0 0 2 0 0.013 0.25 -948 C20orf3 chromosome 20 open reading frame 3 279844 6 6 6 0 2 3 1 0 0 0 0.013 0.25 -949 CTSC cathepsin C 340528 6 6 6 1 1 2 1 0 2 0 0.013 0.25 -950 TGFB2 transforming growth factor, beta 2 303688 9 6 9 3 2 4 1 0 2 0 0.013 0.25 -951 ZFP106 zinc finger protein 106 homolog (mouse) 1283072 14 11 14 2 4 3 3 0 4 0 0.013 0.25 -952 OR51A4 olfactory receptor, family 51, subfamily A, member 4 211904 4 4 4 0 0 2 1 0 1 0 0.013 0.25 -953 OR4K5 olfactory receptor, family 4, subfamily K, member 5 218624 4 4 4 2 0 2 1 0 1 0 0.013 0.25 -954 KIF20B 1225504 17 12 15 3 6 3 4 0 2 2 0.013 0.25 -955 NOVA1 neuro-oncological ventral antigen 1 332088 6 6 6 3 0 5 1 0 0 0 0.013 0.25 -956 FAAH2 fatty acid amide hydrolase 2 368032 4 4 4 0 1 0 2 0 1 0 0.013 0.25 -957 TRA2B 202272 5 5 5 1 3 0 0 1 1 0 0.013 0.25 -958 GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 361496 8 8 8 0 4 2 2 0 0 0 0.013 0.25 -959 CCDC28B coiled-coil domain containing 28B 136780 4 4 4 0 2 2 0 0 0 0 0.013 0.25 -960 FRMPD2 FERM and PDZ domain containing 2 805280 10 10 10 4 2 5 2 0 1 0 0.013 0.25 -961 FOLR1 folate receptor 1 (adult) 176960 5 5 5 2 3 1 1 0 0 0 0.013 0.25 -962 OR10X1 olfactory receptor, family 10, subfamily X, member 1 220640 5 4 5 1 1 2 2 0 0 0 0.013 0.25 -963 GUCY2F guanylate cyclase 2F, retinal 761376 12 10 12 2 3 3 4 0 2 0 0.013 0.25 -964 CLDN16 claudin 16 210112 5 5 5 0 3 1 1 0 0 0 0.013 0.25 -965 ADIPOQ adiponectin, C1Q and collagen domain containing 166432 4 4 4 1 0 3 0 1 0 0 0.014 0.25 -966 COLEC12 collectin sub-family member 12 483280 9 8 9 1 0 3 4 1 1 0 0.014 0.25 -967 MAN2A1 mannosidase, alpha, class 2A, member 1 789152 12 10 12 1 5 3 4 0 0 0 0.014 0.25 -968 FAM49B family with sequence similarity 49, member B 227360 4 4 4 2 1 0 0 0 3 0 0.014 0.25 -969 BMS1 BMS1 homolog, ribosome assembly protein (yeast) 831504 15 12 15 0 5 2 6 0 2 0 0.014 0.25 -970 C11orf57 chromosome 11 open reading frame 57 202048 4 4 4 0 1 0 2 0 1 0 0.014 0.25 -971 NLRP7 NLR family, pyrin domain containing 7 697088 16 12 16 2 9 5 2 0 0 0 0.014 0.25 -972 ITIH2 inter-alpha (globulin) inhibitor H2 655200 10 9 10 6 4 4 2 0 0 0 0.014 0.25 -973 TREM2 triggering receptor expressed on myeloid cells 2 159712 4 4 4 1 2 1 1 0 0 0 0.014 0.25 -974 ZMAT3 zinc finger, matrin type 3 199360 5 5 5 1 1 4 0 0 0 0 0.014 0.25 -975 CRYBA4 crystallin, beta A4 136864 5 4 5 1 2 0 2 0 1 0 0.014 0.25 -976 TEX11 testis expressed 11 648256 8 7 8 4 0 3 3 0 2 0 0.014 0.25 -977 TMEM55A transmembrane protein 55A 179648 5 5 4 0 2 2 0 0 1 0 0.014 0.25 -978 KRTAP22-1 keratin associated protein 22-1 33824 1 1 1 1 0 0 0 0 1 0 0.014 0.25 -979 ZNF483 zinc finger protein 483 517216 10 9 10 2 2 5 3 0 0 0 0.014 0.26 -980 ZNF256 zinc finger protein 256 416416 6 6 6 0 0 2 2 0 2 0 0.014 0.26 -981 MSH6 mutS homolog 6 (E. coli) 893116 15 10 12 6 4 4 1 0 4 2 0.014 0.26 -982 DYDC1 DPY30 domain containing 1 124992 3 3 3 0 0 2 0 0 1 0 0.014 0.26 -983 BCL9L B-cell CLL/lymphoma 9-like 806312 11 10 11 1 4 2 1 0 4 0 0.014 0.26 -984 NTRK3 neurotrophic tyrosine kinase, receptor, type 3 633040 11 9 11 5 6 3 0 0 2 0 0.014 0.26 -985 ALK anaplastic lymphoma receptor tyrosine kinase 1056864 13 12 12 9 2 7 1 0 3 0 0.014 0.26 -986 SERTAD3 SERTA domain containing 3 133280 4 4 4 0 3 0 0 1 0 0 0.014 0.26 -987 DPP8 dipeptidyl-peptidase 8 622048 10 9 9 1 4 3 2 0 1 0 0.014 0.26 -988 TRPV6 transient receptor potential cation channel, subfamily V, member 6 501312 11 9 11 1 4 5 2 0 0 0 0.014 0.26 -989 AHCYL2 S-adenosylhomocysteine hydrolase-like 2 369992 8 7 8 1 1 3 3 0 1 0 0.014 0.26 -990 TDRD3 tudor domain containing 3 449344 8 6 8 1 3 2 1 0 2 0 0.014 0.26 -991 ZFP112 617792 9 9 9 1 2 6 1 0 0 0 0.014 0.26 -992 ARID4A AT rich interactive domain 4A (RBP1-like) 865984 10 9 10 3 3 2 1 0 4 0 0.014 0.26 -993 TSHZ2 teashirt zinc finger homeobox 2 691328 11 10 11 6 4 3 4 0 0 0 0.014 0.26 -994 MRGPRD MAS-related GPR, member D 214340 6 6 6 1 3 1 1 0 1 0 0.014 0.26 -995 FOLH1B 308448 7 6 7 0 0 5 1 0 1 0 0.014 0.26 -996 RCOR3 REST corepressor 3 347200 5 5 5 0 2 1 1 0 1 0 0.014 0.26 -997 IFNA16 interferon, alpha 16 128576 4 4 4 0 0 3 1 0 0 0 0.014 0.26 -998 GPX5 glutathione peroxidase 5 (epididymal androgen-related protein) 153664 4 4 4 0 1 2 1 0 0 0 0.014 0.26 -999 PLK1 polo-like kinase 1 (Drosophila) 402836 9 8 8 2 3 1 2 1 2 0 0.014 0.26 -1000 MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 710528 7 7 7 1 1 1 2 0 3 0 0.015 0.26 -1001 HHLA3 HERV-H LTR-associating 3 80416 3 3 3 1 2 0 1 0 0 0 0.015 0.26 -1002 ADCY8 adenylate cyclase 8 (brain) 787080 12 11 12 9 5 4 2 0 1 0 0.015 0.26 -1003 ZNF345 zinc finger protein 345 329504 12 7 10 1 5 7 0 0 0 0 0.015 0.26 -1004 ZNHIT6 325472 9 6 7 0 0 4 1 0 2 2 0.015 0.27 -1005 TPP1 tripeptidyl peptidase I 390656 6 6 6 0 3 1 2 0 0 0 0.015 0.27 -1006 ARMCX1 armadillo repeat containing, X-linked 1 305984 5 5 5 2 0 3 2 0 0 0 0.015 0.27 -1007 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 800568 14 11 13 7 4 5 2 0 3 0 0.015 0.27 -1008 AGTR1 angiotensin II receptor, type 1 242816 6 5 6 0 1 2 1 0 2 0 0.015 0.27 -1009 DLG2 discs, large homolog 2, chapsyn-110 (Drosophila) 700744 11 9 11 0 3 5 2 0 1 0 0.015 0.27 -1010 OR2T33 olfactory receptor, family 2, subfamily T, member 33 216608 7 6 7 2 1 2 4 0 0 0 0.015 0.27 -1011 A4GNT alpha-1,4-N-acetylglucosaminyltransferase 230944 4 4 4 0 1 1 0 1 1 0 0.015 0.27 -1012 ANKIB1 ankyrin repeat and IBR domain containing 1 748960 9 8 8 1 1 3 2 0 3 0 0.015 0.27 -1013 GRM6 glutamate receptor, metabotropic 6 463344 10 9 10 3 7 2 0 0 1 0 0.015 0.27 -1014 IFLTD1 intermediate filament tail domain containing 1 268576 6 5 6 0 1 4 1 0 0 0 0.015 0.27 -1015 PTGER3 prostaglandin E receptor 3 (subtype EP3) 290156 7 7 7 0 0 3 1 2 1 0 0.015 0.27 -1016 RABL3 RAB, member of RAS oncogene family-like 3 119648 3 3 3 0 2 1 0 0 0 0 0.015 0.27 -1017 TPRX1 tetra-peptide repeat homeobox 1 197820 4 4 4 0 1 2 0 0 1 0 0.015 0.27 -1018 FASTKD3 FAST kinase domains 3 450912 8 7 8 0 1 2 4 0 1 0 0.015 0.27 -1019 KCND2 potassium voltage-gated channel, Shal-related subfamily, member 2 429324 7 7 7 4 2 1 3 0 1 0 0.015 0.27 -1020 SLC41A3 solute carrier family 41, member 3 409624 6 6 6 1 0 5 0 0 1 0 0.015 0.27 -1021 NID2 nidogen 2 (osteonidogen) 937496 11 10 11 0 6 2 0 0 3 0 0.015 0.27 -1022 GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 237216 4 4 4 1 1 1 0 0 2 0 0.015 0.27 -1023 OR5B21 olfactory receptor, family 5, subfamily B, member 21 209216 4 4 4 0 1 1 1 0 1 0 0.015 0.27 -1024 HDX highly divergent homeobox 472416 11 8 11 1 2 6 2 0 1 0 0.015 0.27 -1025 HIST1H1A histone cluster 1, H1a 141344 4 4 4 0 1 1 0 2 0 0 0.015 0.27 -1026 NPY1R neuropeptide Y receptor Y1 260512 4 4 4 0 0 2 1 0 1 0 0.015 0.27 -1027 EPB41L3 erythrocyte membrane protein band 4.1-like 3 747768 18 11 18 6 3 6 5 1 3 0 0.015 0.27 -1028 NOL4 nucleolar protein 4 438928 7 6 7 0 3 1 2 0 1 0 0.015 0.27 -1029 XRCC4 X-ray repair complementing defective repair in Chinese hamster cells 4 232736 4 4 4 0 0 1 1 0 2 0 0.016 0.27 -1030 CCDC39 coiled-coil domain containing 39 579272 12 8 12 1 2 4 3 0 3 0 0.016 0.27 -1031 ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 1563968 22 17 22 5 8 10 4 0 0 0 0.016 0.27 -1032 SHC4 SHC (Src homology 2 domain containing) family, member 4 417732 5 5 5 2 1 1 1 0 2 0 0.016 0.27 -1033 OGDHL oxoglutarate dehydrogenase-like 693392 11 10 10 3 6 1 4 0 0 0 0.016 0.27 -1034 NLRP13 NLR family, pyrin domain containing 13 711424 11 9 11 2 2 4 4 0 1 0 0.016 0.27 -1035 GJA1 gap junction protein, alpha 1, 43kDa 258272 8 6 7 3 6 2 0 0 0 0 0.016 0.27 -1036 ARMC3 armadillo repeat containing 3 600472 8 7 8 0 0 4 1 0 1 2 0.016 0.27 -1037 VEPH1 ventricular zone expressed PH domain homolog 1 (zebrafish) 574336 7 7 7 1 0 3 4 0 0 0 0.016 0.27 -1038 CNIH cornichon homolog (Drosophila) 77712 2 2 2 0 0 1 0 0 1 0 0.016 0.28 -1039 FGD6 FYVE, RhoGEF and PH domain containing 6 980448 13 9 13 1 3 5 0 0 1 4 0.016 0.28 -1040 PYHIN1 pyrin and HIN domain family, member 1 344512 9 6 9 1 1 5 3 0 0 0 0.016 0.28 -1041 AASS aminoadipate-semialdehyde synthase 643552 9 8 9 3 1 3 2 0 3 0 0.016 0.28 -1042 AMPD1 adenosine monophosphate deaminase 1 (isoform M) 519232 9 9 8 0 5 3 1 0 0 0 0.016 0.28 -1043 ZNF573 zinc finger protein 573 382368 7 7 6 1 0 3 2 0 2 0 0.016 0.28 -1044 CLEC5A C-type lectin domain family 5, member A 125992 3 3 3 0 0 1 1 1 0 0 0.016 0.28 -1045 KIAA1377 KIAA1377 755944 10 9 10 3 3 3 3 0 1 0 0.016 0.28 -1046 CORIN corin, serine peptidase 720608 13 10 13 5 4 3 5 0 1 0 0.016 0.28 -1047 VEGFC vascular endothelial growth factor C 274568 6 5 6 0 1 1 2 0 2 0 0.016 0.28 -1048 CD274 CD274 molecule 200928 4 4 4 0 1 2 0 0 1 0 0.016 0.28 -1049 CLEC4D C-type lectin domain family 4, member D 150528 3 3 3 1 1 2 0 0 0 0 0.016 0.28 -1050 OTX2 orthodenticle homeobox 2 202440 4 3 4 0 1 0 0 0 3 0 0.016 0.28 -1051 L3MBTL4 l(3)mbt-like 4 (Drosophila) 428172 6 6 6 1 1 1 3 0 1 0 0.016 0.28 -1052 OR10H1 olfactory receptor, family 10, subfamily H, member 1 215264 6 6 6 2 2 2 1 0 1 0 0.016 0.28 -1053 FXR2 fragile X mental retardation, autosomal homolog 2 416344 7 7 7 0 3 0 0 1 3 0 0.016 0.28 -1054 GHSR growth hormone secretagogue receptor 264908 5 5 5 2 2 1 1 0 1 0 0.016 0.28 -1055 NPY2R neuropeptide Y receptor Y2 257600 5 5 5 1 1 3 1 0 0 0 0.016 0.28 -1056 DEFB119 defensin, beta 119 115808 4 4 4 0 4 0 0 0 0 0 0.016 0.28 -1057 MAEL maelstrom homolog (Drosophila) 302936 6 6 5 1 2 1 1 1 1 0 0.016 0.28 -1058 ZNF502 zinc finger protein 502 368032 6 6 6 2 1 2 1 0 2 0 0.016 0.28 -1059 RUFY3 RUN and FYVE domain containing 3 451584 8 6 8 0 1 4 2 0 1 0 0.016 0.28 -1060 SNTG1 syntrophin, gamma 1 363328 7 6 7 0 2 2 1 0 2 0 0.016 0.28 -1061 UGT2A3 UDP glucuronosyltransferase 2 family, polypeptide A3 360192 7 5 7 0 0 4 2 0 1 0 0.016 0.28 -1062 CCDC117 coiled-coil domain containing 117 150304 4 4 4 0 0 3 1 0 0 0 0.017 0.28 -1063 OR2G6 olfactory receptor, family 2, subfamily G, member 6 213920 4 4 4 3 1 1 2 0 0 0 0.017 0.28 -1064 CDC73 cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 372736 7 6 7 1 4 0 2 0 1 0 0.017 0.28 -1065 LPHN2 latrophilin 2 954968 13 11 13 3 4 3 4 0 2 0 0.017 0.28 -1066 AMOTL1 angiomotin like 1 641964 13 10 12 1 9 1 1 0 2 0 0.017 0.28 -1067 CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 244608 4 4 4 1 0 2 1 0 1 0 0.017 0.28 -1068 GLUD2 glutamate dehydrogenase 2 361676 6 6 6 3 3 2 1 0 0 0 0.017 0.28 -1069 C3orf26 chromosome 3 open reading frame 26 197120 4 4 4 0 0 0 3 0 1 0 0.017 0.28 -1070 OR10Z1 olfactory receptor, family 10, subfamily Z, member 1 211904 5 5 5 1 0 4 1 0 0 0 0.017 0.28 -1071 LRRC30 leucine rich repeat containing 30 203840 5 5 5 2 2 1 1 0 1 0 0.017 0.28 -1072 MAGEB4 melanoma antigen family B, 4 234080 4 4 4 0 1 3 0 0 0 0 0.017 0.28 -1073 ODF1 outer dense fiber of sperm tails 1 170464 4 4 4 1 2 0 1 0 1 0 0.017 0.29 -1074 DNAJC11 DnaJ (Hsp40) homolog, subfamily C, member 11 380320 7 6 7 3 2 1 0 0 4 0 0.017 0.29 -1075 SYT14 synaptotagmin XIV 381864 6 6 6 5 2 2 2 0 0 0 0.017 0.29 -1076 OR5T2 olfactory receptor, family 5, subfamily T, member 2 242816 4 4 4 1 0 1 2 0 1 0 0.017 0.29 -1077 TCEANC 206864 5 5 5 0 1 1 2 0 1 0 0.017 0.29 -1078 OR11L1 olfactory receptor, family 11, subfamily L, member 1 217952 4 4 4 1 1 2 1 0 0 0 0.017 0.29 -1079 NCAPG non-SMC condensin I complex, subunit G 681520 8 8 8 2 3 1 3 0 1 0 0.017 0.29 -1080 SNX22 sorting nexin 22 99232 3 3 3 0 1 2 0 0 0 0 0.017 0.29 -1081 OLFM1 olfactomedin 1 322028 7 7 7 1 1 2 3 0 1 0 0.017 0.29 -1082 OR5M9 olfactory receptor, family 5, subfamily M, member 9 209888 4 4 4 1 3 0 1 0 0 0 0.017 0.29 -1083 TMEM144 transmembrane protein 144 242368 4 4 4 2 0 2 0 0 2 0 0.017 0.29 -1084 STIM2 stromal interaction molecule 2 478016 8 6 7 1 3 2 1 0 2 0 0.017 0.29 -1085 CCDC70 coiled-coil domain containing 70 158144 4 4 4 0 2 1 1 0 0 0 0.017 0.29 -1086 GSDMB 279552 6 5 6 0 0 2 4 0 0 0 0.018 0.29 -1087 OR5AS1 olfactory receptor, family 5, subfamily AS, member 1 219296 4 4 4 3 0 2 2 0 0 0 0.018 0.29 -1088 OR11H6 olfactory receptor, family 11, subfamily H, member 6 223328 6 4 6 0 0 5 0 0 1 0 0.018 0.29 -1089 SUCLA2 succinate-CoA ligase, ADP-forming, beta subunit 314244 5 5 5 0 2 2 0 0 1 0 0.018 0.29 -1090 SETD2 SET domain containing 2 1551608 16 13 16 3 3 6 4 0 3 0 0.018 0.29 -1091 DYRK3 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 385056 8 7 8 1 4 4 0 0 0 0 0.018 0.29 -1092 SF3B4 splicing factor 3b, subunit 4, 49kDa 278164 4 4 4 0 1 1 0 0 2 0 0.018 0.29 -1093 CLEC2B C-type lectin domain family 2, member B 104384 2 2 2 1 0 0 1 0 1 0 0.018 0.29 -1094 C14orf182 75264 2 2 2 0 0 0 1 0 1 0 0.018 0.29 -1095 PZP pregnancy-zone protein 1028832 16 11 16 4 4 6 4 0 2 0 0.018 0.29 -1096 GRIA3 glutamate receptor, ionotrophic, AMPA 3 641536 8 8 8 0 2 5 1 0 0 0 0.018 0.29 -1097 TACR3 tachykinin receptor 3 317632 8 8 8 2 3 3 2 0 0 0 0.018 0.29 -1098 KCNJ16 potassium inwardly-rectifying channel, subfamily J, member 16 282464 5 5 5 1 2 1 0 0 2 0 0.018 0.29 -1099 SYT6 synaptotagmin VI 291648 6 6 6 4 4 2 0 0 0 0 0.018 0.29 -1100 CFH complement factor H 851240 16 10 16 7 3 7 5 0 1 0 0.018 0.29 -1101 ALG8 asparagine-linked glycosylation 8 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) 352192 6 6 6 3 2 2 1 0 1 0 0.018 0.29 -1102 CAPSL calcyphosine-like 144032 5 4 5 0 2 1 0 0 2 0 0.018 0.29 -1103 SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 299768 7 6 7 1 0 3 4 0 0 0 0.018 0.30 -1104 ALG10B asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase) 321216 8 6 8 0 1 5 2 0 0 0 0.018 0.30 -1105 PHEX phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets) 523712 10 7 10 1 3 3 4 0 0 0 0.018 0.30 -1106 KLRB1 killer cell lectin-like receptor subfamily B, member 1 157248 4 3 4 2 1 0 1 0 2 0 0.018 0.30 -1107 HIST1H4E histone cluster 1, H4e 70784 3 3 3 2 0 2 1 0 0 0 0.018 0.30 -1108 HYDIN hydrocephalus inducing homolog (mouse) 3506612 57 25 54 19 28 19 4 0 4 2 0.018 0.30 -1109 CD70 CD70 molecule 130956 5 5 4 1 4 1 0 0 0 0 0.018 0.30 -1110 C15orf60 162632 4 4 4 0 1 2 0 0 1 0 0.018 0.30 -1111 TMEM168 transmembrane protein 168 472640 8 7 8 2 2 1 2 0 3 0 0.018 0.30 -1112 RILP Rab interacting lysosomal protein 150108 4 4 4 1 1 2 1 0 0 0 0.018 0.30 -1113 SLC1A6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 380352 7 7 7 1 3 2 1 0 1 0 0.018 0.30 -1114 MME membrane metallo-endopeptidase 524384 10 9 10 1 3 6 1 0 0 0 0.018 0.30 -1115 OR2A5 olfactory receptor, family 2, subfamily A, member 5 210560 5 5 5 0 1 2 2 0 0 0 0.018 0.30 -1116 IQCB1 IQ motif containing B1 414176 6 6 6 1 1 3 1 1 0 0 0.018 0.30 -1117 ZNF625 zinc finger protein 625 207200 6 5 5 0 3 1 0 0 2 0 0.018 0.30 -1118 CNIH3 cornichon homolog 3 (Drosophila) 97656 5 4 5 0 3 2 0 0 0 0 0.018 0.30 -1119 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 635712 9 9 9 3 4 3 0 0 2 0 0.019 0.30 -1120 DCDC1 doublecortin domain containing 1 244832 5 5 5 0 3 1 1 0 0 0 0.019 0.30 -1121 C12orf42 chromosome 12 open reading frame 42 247072 5 5 5 0 5 0 0 0 0 0 0.019 0.30 -1122 CCRL1 chemokine (C-C motif) receptor-like 1 236768 5 4 5 1 1 2 2 0 0 0 0.019 0.30 -1123 MUC16 mucin 16, cell surface associated 9810632 109 38 108 40 15 64 24 0 4 2 0.019 0.30 -1124 BMP15 bone morphogenetic protein 15 250344 5 4 5 0 1 2 1 0 1 0 0.019 0.30 -1125 C7orf33 chromosome 7 open reading frame 33 122304 4 4 4 0 1 3 0 0 0 0 0.019 0.30 -1126 VMA21 58464 2 2 2 1 0 1 0 0 1 0 0.019 0.30 -1127 PHF7 PHD finger protein 7 265664 5 5 5 0 1 2 2 0 0 0 0.019 0.30 -1128 LYRM5 LYR motif containing 5 56960 3 3 3 0 2 1 0 0 0 0 0.019 0.30 -1129 PRSS35 protease, serine, 35 279104 8 7 8 4 4 3 1 0 0 0 0.019 0.30 -1130 ZFP2 zinc finger protein 2 homolog (mouse) 311360 5 5 4 2 1 2 1 0 1 0 0.019 0.30 -1131 ATP8B1 ATPase, class I, type 8B, member 1 852244 9 9 9 2 2 3 0 0 4 0 0.019 0.30 -1132 CDCA3 cell division cycle associated 3 185248 4 4 4 0 1 2 1 0 0 0 0.019 0.30 -1133 KLHL7 kelch-like 7 (Drosophila) 404320 7 6 7 1 0 1 5 0 1 0 0.019 0.30 -1134 MS4A1 membrane-spanning 4-domains, subfamily A, member 1 205632 4 4 4 2 1 2 0 0 1 0 0.019 0.30 -1135 ADH6 alcohol dehydrogenase 6 (class V) 261632 6 5 6 0 0 3 2 0 1 0 0.019 0.30 -1136 ACADM acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain 297024 6 5 5 1 0 3 0 0 3 0 0.019 0.30 -1137 UMOD uromodulin (uromucoid, Tamm-Horsfall glycoprotein) 353568 7 7 7 0 2 4 0 0 1 0 0.019 0.30 -1138 KCTD20 potassium channel tetramerisation domain containing 20 288512 4 4 3 0 2 0 0 0 2 0 0.019 0.30 -1139 LPL lipoprotein lipase 325332 6 6 6 1 0 3 1 0 2 0 0.019 0.30 -1140 SLA Src-like-adaptor 176024 4 4 4 0 2 1 1 0 0 0 0.019 0.30 -1141 EMR3 egf-like module containing, mucin-like, hormone receptor-like 3 453152 8 6 8 4 1 3 1 0 3 0 0.019 0.30 -1142 FBXO39 F-box protein 39 300384 4 4 4 3 2 0 0 1 1 0 0.019 0.30 -1143 HTN3 histatin 3 38528 1 1 1 0 0 0 0 0 1 0 0.019 0.30 -1144 ELF1 E74-like factor 1 (ets domain transcription factor) 423808 8 7 8 0 3 3 1 0 1 0 0.019 0.30 -1145 OR10A3 olfactory receptor, family 10, subfamily A, member 3 212576 5 5 4 0 1 4 0 0 0 0 0.019 0.30 -1146 JAK3 Janus kinase 3 (a protein tyrosine kinase, leukocyte) 679192 9 8 9 3 2 4 0 0 3 0 0.019 0.30 -1147 DEFB112 defensin, beta 112 78400 2 2 2 1 1 0 1 0 0 0 0.019 0.30 -1148 CCT8L2 chaperonin containing TCP1, subunit 8 (theta)-like 2 374108 6 6 6 1 3 2 1 0 0 0 0.019 0.30 -1149 COL4A6 collagen, type IV, alpha 6 1178256 15 10 14 4 3 5 3 1 3 0 0.019 0.30 -1150 KRIT1 KRIT1, ankyrin repeat containing 509600 5 5 5 0 0 1 2 0 2 0 0.019 0.30 -1151 CDH26 cadherin-like 26 580832 8 8 8 3 6 1 0 0 1 0 0.019 0.30 -1152 ATXN3L ataxin 3-like 240128 5 5 5 0 2 3 0 0 0 0 0.019 0.30 -1153 OR2A12 olfactory receptor, family 2, subfamily A, member 12 209888 3 3 3 1 0 1 2 0 0 0 0.020 0.31 -1154 BTNL8 butyrophilin-like 8 196296 3 3 1 1 0 0 3 0 0 0 0.020 0.31 -1155 TSPYL5 TSPY-like 5 230580 4 4 4 1 1 0 1 0 2 0 0.020 0.31 -1156 PLK4 polo-like kinase 4 (Drosophila) 666848 7 7 7 3 0 3 2 0 2 0 0.020 0.31 -1157 FAM104B family with sequence similarity 104, member B 85344 2 2 2 0 0 2 0 0 0 0 0.020 0.31 -1158 CD2BP2 CD2 (cytoplasmic tail) binding protein 2 233604 5 5 5 0 1 2 2 0 0 0 0.020 0.31 -1159 PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime 594524 10 8 10 0 2 4 1 0 3 0 0.020 0.31 -1160 NFIB nuclear factor I/B 290976 6 6 6 1 3 1 1 0 1 0 0.020 0.31 -1161 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 78176 3 3 3 1 0 2 0 0 1 0 0.020 0.31 -1162 FAM180A 119616 3 3 3 0 1 1 1 0 0 0 0.020 0.31 -1163 ASXL1 additional sex combs like 1 (Drosophila) 1008700 11 10 11 2 2 3 1 0 5 0 0.020 0.31 -1164 SRPK1 SFRS protein kinase 1 426064 9 8 9 1 2 4 2 0 1 0 0.020 0.31 -1165 TNRC6B trinucleotide repeat containing 6B 1168804 7 7 6 2 0 0 1 0 6 0 0.020 0.31 -1166 NCKAP1L NCK-associated protein 1-like 785792 11 10 11 1 6 1 4 0 0 0 0.020 0.31 -1167 DCX doublecortex; lissencephaly, X-linked (doublecortin) 306656 8 6 8 2 3 1 2 0 2 0 0.020 0.31 -1168 ETV5 ets variant gene 5 (ets-related molecule) 354144 6 6 6 1 1 2 1 0 2 0 0.020 0.31 -1169 HLA-DRB1 major histocompatibility complex, class II, DR beta 1 158900 4 3 4 0 0 1 0 0 1 2 0.020 0.32 -1170 OSBPL3 oxysterol binding protein-like 3 616448 8 8 8 2 1 3 1 0 3 0 0.021 0.32 -1171 IL1RN interleukin 1 receptor antagonist 141344 3 3 3 0 2 0 1 0 0 0 0.021 0.32 -1172 RAD21 RAD21 homolog (S. pombe) 436352 6 6 6 1 1 2 2 0 1 0 0.021 0.32 -1173 CHAD chondroadherin 242452 7 7 7 0 2 3 1 0 1 0 0.021 0.32 -1174 DYNC2LI1 dynein, cytoplasmic 2, light intermediate chain 1 252672 7 5 7 0 0 2 4 0 1 0 0.021 0.32 -1175 KLHL32 kelch-like 32 (Drosophila) 426272 9 8 9 0 3 1 5 0 0 0 0.021 0.32 -1176 TSFM Ts translation elongation factor, mitochondrial 218872 5 5 5 0 0 3 2 0 0 0 0.021 0.32 -1177 RG9MTD2 RNA (guanine-9-) methyltransferase domain containing 2 234752 5 4 5 2 0 2 0 1 2 0 0.021 0.32 -1178 C8orf34 chromosome 8 open reading frame 34 299264 6 5 6 2 0 2 3 0 1 0 0.021 0.32 -1179 GLIS3 GLIS family zinc finger 3 600068 11 10 11 2 4 3 3 0 1 0 0.021 0.32 -1180 ZNF658 zinc finger protein 658 652288 8 8 8 1 0 3 4 0 1 0 0.021 0.32 -1181 PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 1583232 17 12 17 3 1 9 5 0 2 0 0.021 0.32 -1182 GALNTL2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 430724 8 8 8 2 3 3 2 0 0 0 0.021 0.32 -1183 GABRQ gamma-aminobutyric acid (GABA) receptor, theta 433440 8 7 8 1 5 1 0 0 2 0 0.021 0.32 -1184 PHTF1 putative homeodomain transcription factor 1 528864 7 6 7 2 3 1 1 0 2 0 0.021 0.32 -1185 CXorf22 chromosome X open reading frame 22 665032 11 9 11 3 4 2 5 0 0 0 0.021 0.32 -1186 AFF3 AF4/FMR2 family, member 3 803260 14 12 14 5 5 3 5 0 1 0 0.021 0.32 -1187 MAGEC3 melanoma antigen family C, 3 512488 7 7 7 2 0 4 2 0 1 0 0.021 0.32 -1188 FAM71B family with sequence similarity 71, member B 409024 10 8 10 1 4 2 3 0 1 0 0.021 0.32 -1189 ARHGAP27 Rho GTPase activating protein 27 366168 7 7 7 2 1 1 2 0 3 0 0.021 0.32 -1190 RPL22 ribosomal protein L22 85996 2 2 2 0 0 0 0 0 2 0 0.021 0.32 -1191 KLHL5 kelch-like 5 (Drosophila) 517888 11 7 9 0 4 2 2 0 3 0 0.021 0.32 -1192 LMBRD1 LMBR1 domain containing 1 377888 6 6 6 1 2 3 1 0 0 0 0.021 0.32 -1193 ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 231168 7 5 7 0 1 1 2 1 2 0 0.021 0.32 -1194 PCDHA3 protocadherin alpha 3 655172 18 14 17 0 13 3 1 0 1 0 0.021 0.32 -1195 ATP11C ATPase, class VI, type 11C 802368 10 9 10 2 2 2 5 0 1 0 0.021 0.32 -1196 RDH10 retinol dehydrogenase 10 (all-trans) 169568 3 3 3 0 0 0 3 0 0 0 0.021 0.32 -1197 SLC10A7 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 249984 3 3 3 0 0 1 0 0 2 0 0.021 0.32 -1198 GLP1R glucagon-like peptide 1 receptor 302640 7 6 7 1 5 1 0 0 1 0 0.021 0.32 -1199 RERGL RERG/RAS-like 142912 3 3 3 1 0 1 2 0 0 0 0.021 0.32 -1200 TTR transthyretin (prealbumin, amyloidosis type I) 103040 3 3 3 0 2 1 0 0 0 0 0.021 0.32 -1201 SEPT2 septin 2 253120 4 4 4 0 2 1 0 0 1 0 0.021 0.32 -1202 ZNF616 zinc finger protein 616 528192 12 8 12 2 0 7 4 0 1 0 0.022 0.32 -1203 RNF168 ring finger protein 168 389760 7 6 7 0 0 3 3 0 1 0 0.022 0.32 -1204 BRWD3 bromodomain and WD repeat domain containing 3 1243592 17 10 16 1 3 5 6 0 1 2 0.022 0.32 -1205 KRTAP19-2 keratin associated protein 19-2 36512 1 1 1 1 0 0 0 0 1 0 0.022 0.32 -1206 ABCD2 ATP-binding cassette, sub-family D (ALD), member 2 506912 10 8 10 1 1 4 5 0 0 0 0.022 0.32 -1207 KLHL20 kelch-like 20 (Drosophila) 419776 7 7 7 1 2 3 2 0 0 0 0.022 0.32 -1208 EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1 411264 6 6 6 0 1 2 1 0 2 0 0.022 0.32 -1209 FAM111B family with sequence similarity 111, member B 495712 10 6 10 2 4 2 3 0 1 0 0.022 0.33 -1210 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 214368 5 5 5 0 0 3 2 0 0 0 0.022 0.33 -1211 KLC4 kinesin light chain 4 437500 7 7 7 0 4 3 0 0 0 0 0.022 0.33 -1212 CCDC81 coiled-coil domain containing 81 393120 7 7 6 1 1 5 0 0 1 0 0.022 0.33 -1213 TBL1X transducin (beta)-like 1X-linked 360944 6 5 6 1 4 0 0 0 2 0 0.022 0.33 -1214 TMEM132B transmembrane protein 132B 731976 10 10 10 0 2 4 3 1 0 0 0.022 0.33 -1215 CADM3 cell adhesion molecule 3 279328 8 7 8 4 3 1 4 0 0 0 0.022 0.33 -1216 RNF20 ring finger protein 20 672896 6 6 6 0 2 0 1 0 3 0 0.022 0.33 -1217 ZNF808 zinc finger protein 808 610176 8 8 8 2 2 4 2 0 0 0 0.022 0.33 -1218 ACYP1 acylphosphatase 1, erythrocyte (common) type 87584 2 2 2 0 0 0 1 0 1 0 0.022 0.33 -1219 ABRA actin-binding Rho activating protein 258328 5 5 5 2 4 1 0 0 0 0 0.022 0.33 -1220 NELL2 NEL-like 2 (chicken) 581728 12 8 12 4 3 6 2 0 1 0 0.022 0.33 -1221 PSG4 pregnancy specific beta-1-glycoprotein 4 287616 7 5 7 2 2 3 2 0 0 0 0.022 0.33 -1222 NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 268352 5 5 5 0 2 1 1 0 1 0 0.022 0.33 -1223 MYO3A myosin IIIA 1116192 24 11 22 4 6 6 7 0 3 2 0.022 0.33 -1224 ATRNL1 attractin-like 1 902916 10 10 10 0 2 5 1 0 2 0 0.022 0.33 -1225 RHBDD1 rhomboid domain containing 1 217728 4 4 4 1 1 2 1 0 0 0 0.022 0.33 -1226 OR1K1 olfactory receptor, family 1, subfamily K, member 1 213920 5 5 5 3 3 1 1 0 0 0 0.022 0.33 -1227 CXorf58 chromosome X open reading frame 58 230944 5 5 5 1 1 2 2 0 0 0 0.022 0.33 -1228 UPB1 ureidopropionase, beta 267680 5 5 5 0 2 1 0 0 2 0 0.022 0.33 -1229 TRHDE thyrotropin-releasing hormone degrading enzyme 650608 14 10 14 0 4 5 3 0 2 0 0.022 0.33 -1230 KATNAL2 katanin p60 subunit A-like 2 326368 7 7 7 1 4 1 1 0 1 0 0.022 0.33 -1231 PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2 262304 8 6 7 3 5 0 2 0 1 0 0.023 0.33 -1232 C19orf75 137536 3 3 3 0 2 1 0 0 0 0 0.023 0.33 -1233 CXCL9 chemokine (C-X-C motif) ligand 9 88256 3 3 3 0 1 1 0 0 1 0 0.023 0.33 -1234 AP3B1 adaptor-related protein complex 3, beta 1 subunit 760032 9 8 9 2 1 0 4 0 4 0 0.023 0.33 -1235 ADAMTSL3 ADAMTS-like 3 1163008 14 14 14 6 4 6 2 1 1 0 0.023 0.33 -1236 RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 257600 4 4 4 2 2 0 2 0 0 0 0.023 0.33 -1237 CDH22 cadherin-like 22 429352 9 8 9 1 4 2 1 2 0 0 0.023 0.33 -1238 APLF 330624 5 4 5 0 2 1 0 0 2 0 0.023 0.33 -1239 KRT84 keratin 84 380396 9 7 9 1 2 2 3 2 0 0 0.023 0.33 -1240 TTC37 1087520 11 11 11 1 2 3 5 0 1 0 0.023 0.33 -1241 C9 complement component 9 386176 5 5 5 1 1 1 2 0 1 0 0.023 0.33 -1242 ZNF235 zinc finger protein 235 497084 6 5 6 0 0 2 3 0 1 0 0.023 0.33 -1243 SALL2 sal-like 2 (Drosophila) 679168 9 9 9 2 6 2 0 0 1 0 0.023 0.33 -1244 OPRK1 opioid receptor, kappa 1 237188 5 5 5 2 3 1 1 0 0 0 0.023 0.33 -1245 MAGEL2 MAGE-like 2 403564 7 7 7 1 4 2 0 0 1 0 0.023 0.33 -1246 AGXT2L1 alanine-glyoxylate aminotransferase 2-like 1 347648 7 6 7 1 1 1 5 0 0 0 0.023 0.33 -1247 SLC25A28 solute carrier family 25, member 28 197988 4 4 4 0 2 0 0 0 2 0 0.023 0.33 -1248 COBLL1 COBL-like 1 786688 11 10 10 0 0 6 4 0 1 0 0.023 0.33 -1249 ZDHHC15 zinc finger, DHHC-type containing 15 239232 5 5 5 0 2 1 2 0 0 0 0.023 0.33 -1250 ZNF578 zinc finger protein 578 399840 6 6 6 1 2 3 1 0 0 0 0.023 0.33 -1251 LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 320088 6 6 6 2 3 1 1 0 1 0 0.023 0.33 -1252 ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 1067584 14 11 14 6 4 3 5 0 2 0 0.023 0.33 -1253 LOXL2 lysyl oxidase-like 2 525600 10 9 10 2 7 1 1 0 1 0 0.023 0.33 -1254 OGFRL1 opioid growth factor receptor-like 1 257684 7 5 6 1 4 3 0 0 0 0 0.023 0.33 -1255 GK2 glycerol kinase 2 373184 6 6 6 4 2 3 1 0 0 0 0.023 0.33 -1256 OR4C46 olfactory receptor, family 4, subfamily C, member 46 209216 5 5 5 0 0 2 3 0 0 0 0.023 0.33 -1257 GABRG3 gamma-aminobutyric acid (GABA) A receptor, gamma 3 310688 5 5 5 2 2 1 1 0 1 0 0.023 0.33 -1258 SGCE sarcoglycan, epsilon 312176 4 4 4 1 1 1 0 0 2 0 0.023 0.34 -1259 GRIK4 glutamate receptor, ionotropic, kainate 4 572532 12 11 12 7 5 4 2 1 0 0 0.024 0.34 -1260 CYB5R4 cytochrome b5 reductase 4 365120 6 6 6 1 0 5 0 0 1 0 0.024 0.34 -1261 OR6M1 olfactory receptor, family 6, subfamily M, member 1 211904 4 4 4 0 2 0 2 0 0 0 0.024 0.34 -1262 SAMD4A sterile alpha motif domain containing 4A 439524 6 6 6 3 1 1 1 0 3 0 0.024 0.34 -1263 TOMM70A translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) 370188 4 4 4 1 1 1 0 0 2 0 0.024 0.34 -1264 SSBP1 single-stranded DNA binding protein 1 105504 3 3 3 0 1 0 1 0 1 0 0.024 0.34 -1265 HGD homogentisate 1,2-dioxygenase (homogentisate oxidase) 130560 2 2 2 1 1 1 0 0 0 0 0.024 0.34 -1266 TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 299572 9 7 9 1 3 4 1 0 1 0 0.024 0.34 -1267 CA10 carbonic anhydrase X 229152 4 4 4 0 1 1 1 0 1 0 0.024 0.34 -1268 OR52R1 olfactory receptor, family 52, subfamily R, member 1 213024 5 4 5 2 0 3 1 1 0 0 0.024 0.34 -1269 ZNF486 zinc finger protein 486 315392 4 4 4 0 0 1 1 0 2 0 0.024 0.34 -1270 FAM181A 229852 4 4 4 3 3 1 0 0 0 0 0.024 0.34 -1271 TCOF1 Treacher Collins-Franceschetti syndrome 1 980480 8 6 8 0 2 2 2 0 2 0 0.024 0.34 -1272 MS4A10 membrane-spanning 4-domains, subfamily A, member 10 186368 4 4 4 3 2 1 0 1 0 0 0.024 0.34 -1273 RAG1 recombination activating gene 1 702464 10 9 10 3 3 4 1 0 2 0 0.024 0.34 -1274 TBCA tubulin folding cofactor A 71800 2 2 2 0 0 0 0 0 2 0 0.024 0.34 -1275 MYT1 myelin transcription factor 1 748252 13 11 12 0 6 4 2 0 1 0 0.024 0.34 -1276 PSG2 pregnancy specific beta-1-glycoprotein 2 230272 4 4 4 0 3 0 0 1 0 0 0.024 0.34 -1277 CCDC28A coiled-coil domain containing 28A 190176 3 3 2 0 0 0 0 0 3 0 0.024 0.34 -1278 KRTAP27-1 keratin associated protein 27-1 140672 3 3 3 0 0 3 0 0 0 0 0.024 0.34 -1279 ANKRD50 ankyrin repeat domain 50 963648 13 12 13 3 5 2 4 0 2 0 0.024 0.34 -1280 C7orf29 chromosome 7 open reading frame 29 148148 3 3 3 0 2 1 0 0 0 0 0.024 0.34 -1281 DDX17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 473540 6 6 6 3 1 1 2 0 2 0 0.024 0.34 -1282 C14orf126 chromosome 14 open reading frame 126 103348 3 3 3 0 0 2 1 0 0 0 0.024 0.34 -1283 ACOT4 acyl-CoA thioesterase 4 239748 6 3 2 1 0 0 0 0 0 6 0.024 0.34 -1284 GPATCH2 G patch domain containing 2 364448 5 4 5 0 0 1 1 0 3 0 0.024 0.34 -1285 FXR1 fragile X mental retardation, autosomal homolog 1 433216 5 5 5 0 1 0 1 0 3 0 0.025 0.35 -1286 TRAF3 TNF receptor-associated factor 3 390572 6 6 6 4 1 1 0 1 3 0 0.025 0.35 -1287 TTLL2 tubulin tyrosine ligase-like family, member 2 400912 8 7 8 0 4 2 2 0 0 0 0.025 0.35 -1288 SBSN suprabasin 174524 4 4 4 1 2 1 0 0 1 0 0.025 0.35 -1289 RSPH4A 487200 9 7 9 2 1 4 2 0 2 0 0.025 0.35 -1290 PRKCG protein kinase C, gamma 465344 10 10 10 5 7 1 2 0 0 0 0.025 0.35 -1291 COL9A1 collagen, type IX, alpha 1 669408 8 6 8 3 3 1 1 0 3 0 0.025 0.35 -1292 SAMD9 sterile alpha motif domain containing 9 1069376 16 10 16 5 2 8 5 0 1 0 0.025 0.35 -1293 SLC9A4 solute carrier family 9 (sodium/hydrogen exchanger), member 4 547680 8 8 8 1 3 1 1 0 3 0 0.025 0.35 -1294 RBM45 RNA binding motif protein 45 326424 6 6 5 2 0 3 1 0 2 0 0.025 0.35 -1295 TSHZ3 teashirt zinc finger homeobox 3 717108 15 10 15 11 6 8 1 0 0 0 0.025 0.35 -1296 OR10W1 olfactory receptor, family 10, subfamily W, member 1 206528 3 3 3 0 1 1 0 0 1 0 0.025 0.35 -1297 RASSF9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 287848 5 4 5 1 1 0 1 0 3 0 0.025 0.35 -1298 APOB apolipoprotein B (including Ag(x) antigen) 3073728 40 21 38 20 14 16 6 0 2 2 0.025 0.35 -1299 AKAP9 A kinase (PRKA) anchor protein (yotiao) 9 2649004 26 18 25 5 6 9 4 0 7 0 0.025 0.35 -1300 GPR174 G protein-coupled receptor 174 225344 3 3 3 1 0 2 0 0 1 0 0.025 0.35 -1301 OR2M5 olfactory receptor, family 2, subfamily M, member 5 211232 5 5 5 2 3 1 1 0 0 0 0.025 0.35 -1302 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 224000 4 4 3 0 3 0 0 0 1 0 0.025 0.35 -1303 ARHGDIB Rho GDP dissociation inhibitor (GDI) beta 140224 3 3 3 0 0 2 1 0 0 0 0.025 0.35 -1304 NET1 neuroepithelial cell transforming gene 1 404096 6 5 6 2 1 1 1 0 3 0 0.025 0.35 -1305 OR51B2 olfactory receptor, family 51, subfamily B, member 2 211232 4 4 4 2 1 3 0 0 0 0 0.025 0.35 -1306 OR10A6 olfactory receptor, family 10, subfamily A, member 6 212576 8 5 8 1 1 4 2 0 1 0 0.025 0.35 -1307 ANGPT1 angiopoietin 1 343392 5 5 5 1 3 2 0 0 0 0 0.025 0.35 -1308 FBXO18 F-box protein, helicase, 18 755468 11 10 11 4 3 3 3 0 2 0 0.025 0.35 -1309 TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 336728 6 6 6 1 1 2 2 0 1 0 0.025 0.35 -1310 TEX13A testis expressed 13A 275816 5 5 5 0 1 2 1 0 1 0 0.025 0.35 -1311 LSM1 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) 93632 3 3 3 0 1 1 1 0 0 0 0.025 0.35 -1312 DYSF dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) 1415636 20 17 20 3 11 6 1 0 2 0 0.025 0.35 -1313 DCP2 DCP2 decapping enzyme homolog (S. cerevisiae) 292768 5 5 5 1 1 1 2 0 1 0 0.026 0.35 -1314 CEP63 centrosomal protein 63kDa 485632 7 7 7 0 2 3 2 0 0 0 0.026 0.35 -1315 SLC25A14 solute carrier family 25 (mitochondrial carrier, brain), member 14 228032 4 4 4 3 1 1 1 0 1 0 0.026 0.35 -1316 ZC4H2 157920 3 3 3 0 1 1 0 0 1 0 0.026 0.35 -1317 FBN2 fibrillin 2 (congenital contractural arachnodactyly) 1984164 23 19 23 11 13 8 1 0 1 0 0.026 0.35 -1318 OR10AG1 olfactory receptor, family 10, subfamily AG, member 1 203840 4 4 4 2 1 3 0 0 0 0 0.026 0.35 -1319 STXBP4 syntaxin binding protein 4 386624 5 5 5 2 2 2 1 0 0 0 0.026 0.35 -1320 DNAJC24 104384 3 3 2 0 2 0 0 1 0 0 0.026 0.35 -1321 EPYC epiphycan 222432 5 4 5 0 2 1 1 1 0 0 0.026 0.35 -1322 CIZ1 CDKN1A interacting zinc finger protein 1 575080 8 8 7 0 3 2 2 0 1 0 0.026 0.35 -1323 ZMAT4 zinc finger, matrin type 4 145520 4 4 4 1 2 1 0 0 1 0 0.026 0.35 -1324 C1orf130 chromosome 1 open reading frame 130 71904 2 2 2 0 1 0 1 0 0 0 0.026 0.35 -1325 SMAP2 stromal membrane-associated GTPase-activating protein 2 295880 5 5 5 2 1 2 0 0 2 0 0.026 0.35 -1326 ADNP activity-dependent neuroprotector homeobox 743904 9 7 9 4 0 3 4 0 2 0 0.026 0.35 -1327 ARHGAP28 Rho GTPase activating protein 28 430080 8 7 7 2 1 1 5 0 1 0 0.026 0.35 -1328 CRTAM cytotoxic and regulatory T cell molecule 273728 5 5 5 0 1 1 2 0 1 0 0.026 0.35 -1329 PCDHA2 protocadherin alpha 2 643580 15 12 14 1 12 2 0 0 1 0 0.026 0.35 -1330 CLC Charcot-Leyden crystal protein 99680 3 3 3 0 0 2 0 0 1 0 0.026 0.35 -1331 ZMAT1 zinc finger, matrin type 1 406784 6 5 6 0 0 3 3 0 0 0 0.026 0.35 -1332 ST6GAL2 ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 311484 8 7 8 0 5 2 1 0 0 0 0.026 0.35 -1333 TMEM42 transmembrane protein 42 68964 2 2 2 0 1 1 0 0 0 0 0.026 0.35 -1334 SIGLEC6 sialic acid binding Ig-like lectin 6 309344 5 5 5 2 3 1 1 0 0 0 0.026 0.35 -1335 C18orf19 chromosome 18 open reading frame 19 186144 4 4 4 1 2 0 1 0 1 0 0.026 0.35 -1336 DBC1 deleted in bladder cancer 1 515480 10 9 10 3 5 2 2 0 1 0 0.026 0.35 -1337 XPR1 xenotropic and polytropic retrovirus receptor 481824 11 7 11 4 5 2 1 0 3 0 0.026 0.35 -1338 EXOSC9 exosome component 9 306432 5 5 5 1 0 4 1 0 0 0 0.026 0.35 -1339 ZNF167 zinc finger protein 167 501912 8 7 7 4 2 3 1 0 2 0 0.026 0.35 -1340 SLC35E1 solute carrier family 35, member E1 186144 7 5 7 0 6 0 0 1 0 0 0.026 0.36 -1341 KIAA0562 KIAA0562 628168 11 8 10 3 3 4 0 0 2 2 0.027 0.36 -1342 HTR3B 5-hydroxytryptamine (serotonin) receptor 3B 305088 6 6 5 1 4 2 0 0 0 0 0.027 0.36 -1343 WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1 329504 7 5 7 0 1 2 3 0 1 0 0.027 0.36 -1344 RBL2 retinoblastoma-like 2 (p130) 732536 8 8 8 0 2 2 2 0 2 0 0.027 0.36 -1345 RNF219 ring finger protein 219 493920 7 5 7 2 1 3 1 0 2 0 0.027 0.36 -1346 PLA2G4C phospholipase A2, group IVC (cytosolic, calcium-independent) 381696 8 8 8 4 4 3 1 0 0 0 0.027 0.36 -1347 TRAF3IP3 TRAF3 interacting protein 3 373184 6 6 6 1 1 2 2 0 1 0 0.027 0.36 -1348 LEPR leptin receptor 804608 9 8 9 4 0 5 2 0 2 0 0.027 0.36 -1349 FKBPL FK506 binding protein like 234836 6 5 6 0 3 0 0 1 2 0 0.027 0.36 -1350 PNPT1 polyribonucleotide nucleotidyltransferase 1 551936 10 7 10 0 1 4 4 0 1 0 0.027 0.36 -1351 TECRL 255360 5 5 5 0 0 2 3 0 0 0 0.027 0.36 -1352 NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 505344 6 6 6 2 1 3 1 0 1 0 0.027 0.36 -1353 GABRA3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 339360 5 5 5 0 1 3 0 0 1 0 0.027 0.36 -1354 HERC3 hect domain and RLD 3 727776 9 8 9 1 1 1 5 0 0 2 0.027 0.36 -1355 BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 146912 3 3 3 0 0 2 1 0 0 0 0.027 0.36 -1356 VPS13B vacuolar protein sorting 13 homolog B (yeast) 2774864 29 20 29 7 5 11 12 0 1 0 0.027 0.36 -1357 FAM47B family with sequence similarity 47, member B 432968 6 6 6 7 5 1 0 0 0 0 0.027 0.36 -1358 PGA5 pepsinogen 5, group I (pepsinogen A) 118048 3 3 3 0 2 0 1 0 0 0 0.027 0.36 -1359 ASTE1 asteroid homolog 1 (Drosophila) 460544 8 5 8 1 1 1 2 0 2 2 0.027 0.36 -1360 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 277444 8 6 7 1 2 1 4 0 1 0 0.027 0.36 -1361 IKZF2 IKAROS family zinc finger 2 (Helios) 360416 6 5 6 1 0 1 2 0 3 0 0.027 0.36 -1362 ROCK1 Rho-associated, coiled-coil containing protein kinase 1 940128 15 10 15 2 4 6 4 0 1 0 0.027 0.36 -1363 BTBD7 BTB (POZ) domain containing 7 787136 9 7 8 1 2 2 0 0 5 0 0.027 0.36 -1364 RERG RAS-like, estrogen-regulated, growth inhibitor 137984 3 3 3 0 2 0 1 0 0 0 0.027 0.36 -1365 RIT2 Ras-like without CAAX 2 150976 2 2 2 0 0 0 1 0 1 0 0.027 0.36 -1366 AKAP3 A kinase (PRKA) anchor protein 3 576576 11 7 11 0 2 3 2 0 2 2 0.027 0.36 -1367 NTSR2 neurotensin receptor 2 162484 5 5 5 2 3 1 1 0 0 0 0.027 0.36 -1368 DAO D-amino-acid oxidase 242816 6 5 6 0 4 1 0 0 1 0 0.027 0.36 -1369 L1TD1 LINE-1 type transposase domain containing 1 430864 8 6 8 0 1 4 1 0 2 0 0.027 0.36 -1370 LMO7 LIM domain 7 1162560 19 13 19 1 5 8 4 1 1 0 0.027 0.36 -1371 BAALC brain and acute leukemia, cytoplasmic 64064 3 2 3 0 1 1 1 0 0 0 0.027 0.36 -1372 CD84 CD84 molecule 229600 3 3 3 2 0 0 0 1 2 0 0.028 0.36 -1373 PPP4R4 620788 13 8 13 2 2 3 4 0 4 0 0.028 0.36 -1374 OTC ornithine carbamoyltransferase 247520 5 5 5 1 1 3 1 0 0 0 0.028 0.36 -1375 GMFB glia maturation factor, beta 101780 3 3 3 0 0 2 0 1 0 0 0.028 0.36 -1376 EFNB3 ephrin-B3 219952 3 3 3 0 2 0 0 0 1 0 0.028 0.36 -1377 NPAS4 neuronal PAS domain protein 4 518868 9 9 9 2 3 5 1 0 0 0 0.028 0.36 -1378 ENPEP glutamyl aminopeptidase (aminopeptidase A) 661612 9 8 9 3 1 4 2 0 2 0 0.028 0.36 -1379 CXCL17 chemokine (C-X-C motif) ligand 17 84224 2 2 2 0 0 0 2 0 0 0 0.028 0.36 -1380 DIAPH2 diaphanous homolog 2 (Drosophila) 760248 12 10 12 1 6 5 1 0 0 0 0.028 0.36 -1381 GRID1 glutamate receptor, ionotropic, delta 1 668920 16 11 16 5 7 7 2 0 0 0 0.028 0.36 -1382 SIP1 survival of motor neuron protein interacting protein 1 197792 3 3 3 0 0 0 0 0 3 0 0.028 0.36 -1383 SPAG16 sperm associated antigen 16 436276 9 7 9 6 0 3 3 0 1 2 0.028 0.36 -1384 MTPAP 399840 7 6 7 1 1 1 3 0 2 0 0.028 0.36 -1385 GKN1 gastrokine 1 139776 3 3 3 1 1 1 1 0 0 0 0.028 0.36 -1386 CNTN4 contactin 4 709856 11 10 11 6 3 3 4 0 1 0 0.028 0.36 -1387 TATDN2 TatD DNase domain containing 2 508956 9 8 9 0 2 4 1 0 2 0 0.028 0.36 -1388 WT1 Wilms tumor 1 246176 6 6 6 3 3 1 2 0 0 0 0.028 0.36 -1389 HIST1H3D histone cluster 1, H3d 92960 3 3 3 0 0 2 1 0 0 0 0.028 0.37 -1390 FAM113B family with sequence similarity 113, member B 288984 5 5 5 2 2 0 0 1 2 0 0.028 0.37 -1391 BARD1 BRCA1 associated RING domain 1 516124 7 7 7 0 0 4 1 0 2 0 0.028 0.37 -1392 ESM1 endothelial cell-specific molecule 1 127008 3 3 3 1 2 0 1 0 0 0 0.028 0.37 -1393 RTN4 reticulon 4 729092 10 7 10 1 1 3 3 0 3 0 0.028 0.37 -1394 ADAM32 ADAM metallopeptidase domain 32 502728 8 7 7 0 4 2 1 0 1 0 0.028 0.37 -1395 GOLIM4 golgi integral membrane protein 4 482216 8 7 7 0 1 4 0 0 3 0 0.028 0.37 -1396 TAS2R20 taste receptor, type 2, member 20 209216 4 4 4 0 1 2 1 0 0 0 0.028 0.37 -1397 ZNF83 zinc finger protein 83 348320 7 7 7 1 3 3 1 0 0 0 0.028 0.37 -1398 CREM cAMP responsive element modulator 289408 4 4 4 0 2 2 0 0 0 0 0.028 0.37 -1399 CAV3 caveolin 3 103936 3 3 3 1 2 1 0 0 0 0 0.028 0.37 -1400 DSPP dentin sialophosphoprotein 576428 7 6 7 1 1 4 1 0 1 0 0.029 0.37 -1401 SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 655552 9 9 9 1 2 7 0 0 0 0 0.029 0.37 -1402 RAB3C RAB3C, member RAS oncogene family 157696 5 4 5 2 3 1 1 0 0 0 0.029 0.37 -1403 MBD6 methyl-CpG binding domain protein 6 652288 7 6 6 1 2 2 0 0 3 0 0.029 0.37 -1404 FHOD3 formin homology 2 domain containing 3 943320 19 12 17 5 10 4 2 0 3 0 0.029 0.37 -1405 C20orf103 chromosome 20 open reading frame 103 194208 5 5 5 0 3 1 1 0 0 0 0.029 0.37 -1406 NKAPL NFKB activating protein-like 268688 8 5 8 0 6 0 2 0 0 0 0.029 0.37 -1407 SEPT10 septin 10 308000 5 4 4 0 0 0 1 0 4 0 0.029 0.37 -1408 ANKFN1 ankyrin-repeat and fibronectin type III domain containing 1 528640 8 7 8 2 1 5 1 0 1 0 0.029 0.37 -1409 EGR2 early growth response 2 (Krox-20 homolog, Drosophila) 310016 8 8 7 2 5 2 1 0 0 0 0.029 0.37 -1410 PAM peptidylglycine alpha-amidating monooxygenase 677600 9 9 9 2 2 5 2 0 0 0 0.029 0.37 -1411 CCDC112 coiled-coil domain containing 112 349636 5 5 5 3 0 3 0 0 2 0 0.029 0.37 -1412 SLC30A9 solute carrier family 30 (zinc transporter), member 9 390516 7 6 6 2 3 1 0 0 1 2 0.029 0.37 -1413 ROS1 c-ros oncogene 1 , receptor tyrosine kinase 1616384 22 13 22 5 1 10 8 0 3 0 0.029 0.37 -1414 KIRREL3 kin of IRRE like 3 (Drosophila) 477544 10 9 10 0 8 0 1 0 1 0 0.029 0.37 -1415 CRMP1 collapsin response mediator protein 1 387968 8 8 8 3 6 1 0 0 1 0 0.029 0.37 -1416 FXYD6 FXYD domain containing ion transport regulator 6 61456 2 2 2 1 0 2 0 0 0 0 0.029 0.37 -1417 CTCFL CCCTC-binding factor (zinc finger protein)-like 445928 8 8 7 1 5 1 1 0 1 0 0.029 0.37 -1418 HPSE2 heparanase 2 395056 12 8 10 2 4 3 4 0 1 0 0.029 0.37 -1419 PTH2 parathyroid hormone 2 52876 2 2 2 0 0 0 1 0 1 0 0.029 0.37 -1420 EFCAB2 EF-hand calcium binding domain 2 109312 2 2 2 0 0 1 0 0 1 0 0.029 0.37 -1421 C22orf43 164496 3 3 3 0 0 0 2 0 1 0 0.029 0.37 -1422 B4GALT3 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 270144 7 7 7 0 4 2 1 0 0 0 0.029 0.37 -1423 SEC63 SEC63 homolog (S. cerevisiae) 520824 7 6 7 0 5 0 1 0 1 0 0.030 0.37 -1424 NEUROD4 neurogenic differentiation 4 224000 5 4 5 2 1 2 1 0 1 0 0.030 0.37 -1425 PNMAL1 PNMA-like 1 299712 5 5 5 3 0 3 1 0 1 0 0.030 0.37 -1426 RSPO3 R-spondin 3 homolog (Xenopus laevis) 185896 3 3 3 0 0 1 1 0 1 0 0.030 0.37 -1427 FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial 309120 5 5 5 1 1 2 1 0 1 0 0.030 0.38 -1428 LGALS8 lectin, galactoside-binding, soluble, 8 (galectin 8) 250880 5 5 5 0 2 1 1 0 1 0 0.030 0.38 -1429 MAPK9 mitogen-activated protein kinase 9 322784 5 5 5 1 0 1 1 0 3 0 0.030 0.38 -1430 SEMA5B sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B 691424 11 11 11 2 6 3 2 0 0 0 0.030 0.38 -1431 ZNF32 zinc finger protein 32 185920 5 5 4 0 2 2 0 0 1 0 0.030 0.38 -1432 SLC25A24 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 349744 7 6 7 1 1 2 2 1 1 0 0.030 0.38 -1433 VMO1 vitelline membrane outer layer 1 homolog (chicken) 141344 3 3 3 0 0 2 0 0 1 0 0.030 0.38 -1434 DENND4A DENN/MADD domain containing 4A 1248344 16 11 15 1 5 5 1 0 3 2 0.030 0.38 -1435 CLK1 CDC-like kinase 1 336672 6 6 6 0 1 1 2 0 2 0 0.030 0.38 -1436 UGT8 UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) 368704 8 7 6 1 4 3 1 0 0 0 0.030 0.38 -1437 ITIH1 inter-alpha (globulin) inhibitor H1 624280 13 11 13 3 5 6 1 0 1 0 0.030 0.38 -1438 ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 1278008 15 10 14 1 4 4 1 0 6 0 0.030 0.38 -1439 NR2F2 nuclear receptor subfamily 2, group F, member 2 225580 5 5 5 1 3 0 1 0 1 0 0.030 0.38 -1440 SPHKAP SPHK1 interactor, AKAP domain containing 1147388 17 13 17 8 5 5 6 0 1 0 0.030 0.38 -1441 VAV3 vav 3 guanine nucleotide exchange factor 598472 12 9 11 2 5 5 2 0 0 0 0.030 0.38 -1442 SAGE1 sarcoma antigen 1 625184 10 10 9 0 5 3 1 0 1 0 0.030 0.38 -1443 TGM4 transglutaminase 4 (prostate) 472864 7 7 7 2 3 2 2 0 0 0 0.030 0.38 -1444 RANBP3L RAN binding protein 3-like 325696 5 4 5 0 1 2 1 0 1 0 0.030 0.38 -1445 GNA14 guanine nucleotide binding protein (G protein), alpha 14 245504 6 6 6 1 4 1 1 0 0 0 0.030 0.38 -1446 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 749504 9 9 8 2 4 1 0 0 4 0 0.031 0.38 -1447 NAA25 666928 9 8 8 0 2 4 0 0 3 0 0.031 0.38 -1448 CNOT7 CCR4-NOT transcription complex, subunit 7 198912 3 3 3 0 1 0 0 0 2 0 0.031 0.38 -1449 KLHL1 kelch-like 1 (Drosophila) 511252 7 5 7 4 1 2 1 0 3 0 0.031 0.38 -1450 NOC3L nucleolar complex associated 3 homolog (S. cerevisiae) 557088 15 8 15 3 3 7 3 0 2 0 0.031 0.38 -1451 TFG TRK-fused gene 275744 6 5 5 0 2 2 0 0 2 0 0.031 0.38 -1452 CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 338016 7 5 7 1 1 2 3 0 1 0 0.031 0.38 -1453 OR56A1 olfactory receptor, family 56, subfamily A, member 1 215264 4 4 4 2 2 2 0 0 0 0 0.031 0.38 -1454 CHODL chondrolectin 170912 3 3 3 0 0 2 1 0 0 0 0.031 0.38 -1455 PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 850088 12 8 12 1 3 3 2 0 4 0 0.031 0.38 -1456 ZWINT ZW10 interactor 193984 4 4 4 0 1 2 1 0 0 0 0.031 0.38 -1457 IYD iodotyrosine deiodinase 199360 4 4 4 0 2 1 1 0 0 0 0.031 0.38 -1458 CSMD2 CUB and Sushi multiple domains 2 2389712 30 24 30 13 16 7 5 0 2 0 0.031 0.38 -1459 ARG2 arginase, type II 245728 5 5 5 0 0 2 1 0 2 0 0.031 0.38 -1460 CRHBP corticotropin releasing hormone binding protein 223056 4 4 3 0 0 3 1 0 0 0 0.031 0.38 -1461 PTPRK protein tyrosine phosphatase, receptor type, K 999072 12 10 12 2 3 3 4 0 2 0 0.031 0.38 -1462 EMB embigin homolog (mouse) 202496 3 3 3 1 0 1 2 0 0 0 0.031 0.38 -1463 NPHS1 nephrosis 1, congenital, Finnish type (nephrin) 826928 14 11 14 2 5 4 3 0 2 0 0.031 0.38 -1464 PDYN prodynorphin 169120 4 4 4 1 2 2 0 0 0 0 0.031 0.39 -1465 POLDIP3 polymerase (DNA-directed), delta interacting protein 3 291648 6 6 6 0 2 2 1 0 1 0 0.031 0.39 -1466 ZNF426 zinc finger protein 426 378336 6 6 6 1 3 0 2 0 1 0 0.031 0.39 -1467 LRRC52 leucine rich repeat containing 52 212800 4 4 4 0 1 2 1 0 0 0 0.031 0.39 -1468 RELN reelin 2377396 33 21 32 9 8 13 12 0 0 0 0.032 0.39 -1469 C8orf80 chromosome 8 open reading frame 80 484936 10 8 10 1 4 4 2 0 0 0 0.032 0.39 -1470 TPM2 tropomyosin 2 (beta) 232504 6 5 6 1 4 1 0 0 1 0 0.032 0.39 -1471 SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 375200 7 6 7 1 2 1 2 0 2 0 0.032 0.39 -1472 OR5H1 olfactory receptor, family 5, subfamily H, member 1 211904 3 3 3 0 0 1 1 0 1 0 0.032 0.39 -1473 NAT9 N-acetyltransferase 9 145152 3 3 3 0 1 1 0 0 1 0 0.032 0.39 -1474 OR8D2 olfactory receptor, family 8, subfamily D, member 2 210560 3 3 3 0 1 1 0 0 1 0 0.032 0.39 -1475 C1orf113 chromosome 1 open reading frame 113 242312 5 4 5 2 1 2 1 0 1 0 0.032 0.39 -1476 PGAP1 post-GPI attachment to proteins 1 644448 8 7 8 1 1 1 3 0 3 0 0.032 0.39 -1477 PI4KA phosphatidylinositol 4-kinase, catalytic, alpha 1383152 15 14 15 4 6 3 3 0 3 0 0.032 0.39 -1478 CREB3 cAMP responsive element binding protein 3 258048 3 3 3 0 0 0 0 1 2 0 0.032 0.39 -1479 IQCF3 IQ motif containing F3 106848 3 3 3 0 2 0 1 0 0 0 0.032 0.39 -1480 RNF148 ring finger protein 148 206528 6 5 6 0 1 4 1 0 0 0 0.032 0.39 -1481 SENP5 SUMO1/sentrin specific peptidase 5 516096 8 8 8 2 2 4 1 0 1 0 0.032 0.39 -1482 PROCA1 230048 5 5 5 2 2 2 1 0 0 0 0.032 0.39 -1483 ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 927136 12 10 12 2 3 3 3 0 3 0 0.032 0.39 -1484 HS3ST4 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 179144 5 5 5 0 1 3 1 0 0 0 0.032 0.39 -1485 TIGIT 159384 4 4 4 0 1 2 1 0 0 0 0.032 0.39 -1486 DGKD diacylglycerol kinase, delta 130kDa 811400 12 11 12 2 4 4 2 0 2 0 0.032 0.39 -1487 MAPKBP1 mitogen-activated protein kinase binding protein 1 1042748 11 10 11 3 5 1 1 0 4 0 0.032 0.39 -1488 MC5R melanocortin 5 receptor 218876 7 6 7 0 2 4 1 0 0 0 0.032 0.39 -1489 ZNF34 zinc finger protein 34 360336 4 4 4 0 0 0 2 0 2 0 0.032 0.39 -1490 DPYS dihydropyrimidinase 297472 7 6 7 0 0 4 3 0 0 0 0.032 0.39 -1491 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis) 516992 8 6 8 1 0 2 3 0 3 0 0.032 0.39 -1492 SNX2 sorting nexin 2 347648 5 5 5 1 2 1 1 0 1 0 0.032 0.39 -1493 NAB2 NGFI-A binding protein 2 (EGR1 binding protein 2) 303640 5 5 5 2 2 1 1 0 1 0 0.032 0.39 -1494 OR5V1 olfactory receptor, family 5, subfamily V, member 1 217280 3 3 3 0 0 1 0 0 2 0 0.032 0.39 -1495 TAPBP TAP binding protein (tapasin) 305424 5 5 4 0 0 1 2 0 2 0 0.032 0.39 -1496 DAD1 defender against cell death 1 78400 2 2 2 0 0 1 0 0 1 0 0.032 0.39 -1497 OR4M2 olfactory receptor, family 4, subfamily M, member 2 211904 5 5 5 1 0 3 2 0 0 0 0.032 0.39 -1498 SNAP29 synaptosomal-associated protein, 29kDa 156492 3 3 3 2 0 1 0 0 2 0 0.033 0.39 -1499 PPM1L protein phosphatase 1 (formerly 2C)-like 246176 4 4 3 1 0 2 0 0 2 0 0.033 0.39 -1500 LEKR1 leucine, glutamate and lysine rich 1 267456 5 5 5 0 1 2 0 0 2 0 0.033 0.39 -1501 PARK2 Parkinson disease (autosomal recessive, juvenile) 2, parkin 322420 6 6 6 1 1 3 2 0 0 0 0.033 0.39 -1502 C7orf25 chromosome 7 open reading frame 25 286720 5 5 5 2 0 3 1 0 1 0 0.033 0.39 -1503 ALDOB aldolase B, fructose-bisphosphate 252448 5 5 5 1 1 4 0 0 0 0 0.033 0.39 -1504 LRRC18 leucine rich repeat containing 18 177856 4 4 3 1 2 1 1 0 0 0 0.033 0.40 -1505 OR5A2 olfactory receptor, family 5, subfamily A, member 2 219296 3 3 3 0 0 1 2 0 0 0 0.033 0.40 -1506 SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 277536 5 5 5 2 0 3 1 0 1 0 0.033 0.40 -1507 DSTN destrin (actin depolymerizing factor) 113568 4 3 4 0 1 2 0 0 1 0 0.033 0.40 -1508 DNAH2 dynein, axonemal, heavy chain 2 3045192 42 26 42 11 17 15 7 0 3 0 0.033 0.40 -1509 SECISBP2L 719128 11 8 11 1 3 5 2 1 0 0 0.033 0.40 -1510 BEX5 BEX family member 5 76160 2 2 2 0 0 1 1 0 0 0 0.033 0.40 -1511 ICA1 islet cell autoantigen 1, 69kDa 336896 4 4 2 2 0 1 0 0 3 0 0.033 0.40 -1512 C6orf174 chromosome 6 open reading frame 174 485604 12 11 12 8 6 3 3 0 0 0 0.033 0.40 -1513 SEMA3E sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E 536704 9 7 9 3 4 2 0 1 2 0 0.033 0.40 -1514 SOD2 superoxide dismutase 2, mitochondrial 150664 4 4 4 1 1 2 1 0 0 0 0.033 0.40 -1515 CD163 CD163 molecule 791840 13 10 13 1 3 8 1 1 0 0 0.033 0.40 -1516 FCAR Fc fragment of IgA, receptor for 200256 3 3 3 0 1 0 0 0 2 0 0.033 0.40 -1517 CCL18 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) 63168 2 2 2 0 1 1 0 0 0 0 0.033 0.40 -1518 ZNF382 zinc finger protein 382 372960 8 6 8 4 3 4 0 0 1 0 0.033 0.40 -1519 ENAM enamelin 650272 9 9 8 3 4 4 1 0 0 0 0.033 0.40 -1520 UQCRB ubiquinol-cytochrome c reductase binding protein 78848 2 2 2 1 0 0 1 0 1 0 0.033 0.40 -1521 TCF7 transcription factor 7 (T-cell specific, HMG-box) 241780 6 5 6 1 2 3 1 0 0 0 0.034 0.40 -1522 GPR31 G protein-coupled receptor 31 215800 3 3 3 1 1 1 0 0 1 0 0.034 0.40 -1523 IL20 interleukin 20 123424 3 3 3 0 2 0 0 0 1 0 0.034 0.40 -1524 ARHGAP36 378112 7 7 6 1 6 1 0 0 0 0 0.034 0.40 -1525 RGS2 regulator of G-protein signaling 2, 24kDa 146944 3 3 3 0 0 1 0 0 2 0 0.034 0.40 -1526 TNPO1 transportin 1 625632 8 7 8 1 1 3 2 0 2 0 0.034 0.40 -1527 MYOZ2 myozenin 2 182560 6 5 5 0 3 3 0 0 0 0 0.034 0.40 -1528 DPF2 D4, zinc and double PHD fingers family 2 273280 5 4 5 2 0 1 3 1 0 0 0.034 0.40 -1529 ZC3H12C zinc finger CCCH-type containing 12C 591920 10 9 9 1 5 0 3 0 2 0 0.034 0.40 -1530 APBB1IP amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein 376684 5 5 5 2 2 2 1 0 0 0 0.034 0.40 -1531 PRKG1 protein kinase, cGMP-dependent, type I 501744 9 7 9 2 0 5 4 0 0 0 0.034 0.40 -1532 PSMB8 proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) 168392 3 3 3 0 0 2 0 1 0 0 0.034 0.40 -1533 OTP orthopedia homeobox 123568 3 3 3 2 1 1 0 0 1 0 0.034 0.40 -1534 TXNL4B thioredoxin-like 4B 103488 2 2 2 0 0 0 1 0 1 0 0.034 0.40 -1535 PRKD3 protein kinase D3 614880 8 8 8 0 2 3 3 0 0 0 0.034 0.40 -1536 TFPI2 tissue factor pathway inhibitor 2 163072 4 4 4 1 1 2 1 0 0 0 0.034 0.40 -1537 FAM105A family with sequence similarity 105, member A 231840 3 3 3 0 0 0 2 0 1 0 0.034 0.40 -1538 LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 72800 2 2 1 0 0 0 0 0 2 0 0.034 0.40 -1539 IL26 interleukin 26 120064 3 3 3 0 1 1 1 0 0 0 0.034 0.40 -1540 IGDCC3 522008 7 7 7 0 2 1 2 0 2 0 0.034 0.40 -1541 OR10J1 olfactory receptor, family 10, subfamily J, member 1 216608 5 4 5 0 1 1 3 0 0 0 0.034 0.40 -1542 FOLR3 folate receptor 3 (gamma) 167524 3 3 3 0 1 0 0 0 2 0 0.034 0.40 -1543 OR7A10 olfactory receptor, family 7, subfamily A, member 10 209216 3 3 3 1 0 2 0 0 1 0 0.034 0.40 -1544 RAD54B RAD54 homolog B (S. cerevisiae) 624736 8 7 8 2 2 1 3 0 2 0 0.034 0.40 -1545 ZBBX zinc finger, B-box domain containing 554400 7 7 6 2 0 4 3 0 0 0 0.034 0.40 -1546 ZNF91 zinc finger protein 91 804608 11 8 11 1 1 5 4 0 1 0 0.034 0.40 -1547 JRKL jerky homolog-like (mouse) 310312 5 5 5 0 0 2 2 0 1 0 0.034 0.40 -1548 C12orf59 chromosome 12 open reading frame 59 113792 3 3 3 1 1 1 1 0 0 0 0.034 0.40 -1549 MSN moesin 386192 6 6 6 0 3 2 0 0 1 0 0.034 0.40 -1550 HLA-B major histocompatibility complex, class I, B 193864 5 3 3 0 0 0 0 0 1 4 0.035 0.40 -1551 WDR69 WD repeat domain 69 291200 7 5 7 2 2 4 0 0 1 0 0.035 0.40 -1552 CORO2B coronin, actin binding protein, 2B 329728 8 8 8 4 5 3 0 0 0 0 0.035 0.40 -1553 CENPA centromere protein A 75040 2 2 2 1 0 0 0 0 2 0 0.035 0.40 -1554 MCC mutated in colorectal cancers 697900 13 11 13 4 6 5 2 0 0 0 0.035 0.40 -1555 OR10J5 olfactory receptor, family 10, subfamily J, member 5 209216 3 3 3 1 0 1 1 0 1 0 0.035 0.40 -1556 MYOZ1 myozenin 1 206080 5 5 5 0 1 4 0 0 0 0 0.035 0.40 -1557 MAN1C1 mannosidase, alpha, class 1C, member 1 380408 7 7 7 1 4 2 0 0 1 0 0.035 0.40 -1558 PIK3CG phosphoinositide-3-kinase, catalytic, gamma polypeptide 733040 14 13 14 2 6 6 2 0 0 0 0.035 0.40 -1559 ADSL adenylosuccinate lyase 336196 7 7 7 1 4 3 0 0 0 0 0.035 0.40 -1560 CCR8 chemokine (C-C motif) receptor 8 240128 4 4 4 2 0 2 2 0 0 0 0.035 0.40 -1561 FAM127B family with sequence similarity 127, member B 77252 3 3 3 0 1 1 1 0 0 0 0.035 0.40 -1562 PPP3CB protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform 350980 5 5 5 2 2 0 1 0 2 0 0.035 0.40 -1563 ANK1 ankyrin 1, erythrocytic 1393636 19 18 19 8 12 3 3 0 1 0 0.035 0.41 -1564 LONRF2 LON peptidase N-terminal domain and ring finger 2 383752 7 7 7 1 2 3 1 0 1 0 0.035 0.41 -1565 MS4A14 membrane-spanning 4-domains, subfamily A, member 14 461272 9 7 9 0 2 6 1 0 0 0 0.035 0.41 -1566 MCM10 minichromosome maintenance complex component 10 605696 8 8 8 2 3 5 0 0 0 0 0.035 0.41 -1567 ING1 inhibitor of growth family, member 1 292124 6 6 5 0 3 0 1 0 2 0 0.035 0.41 -1568 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) 72800 2 2 2 0 1 0 1 0 0 0 0.035 0.41 -1569 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) 311680 5 5 5 1 1 2 2 0 0 0 0.035 0.41 -1570 TBC1D10C TBC1 domain family, member 10C 187852 3 3 2 0 0 0 0 0 3 0 0.036 0.41 -1571 TIMM17B translocase of inner mitochondrial membrane 17 homolog B (yeast) 113336 2 2 2 0 0 0 0 0 2 0 0.036 0.41 -1572 TCERG1L transcription elongation regulator 1-like 241800 6 4 6 2 2 1 1 0 2 0 0.036 0.41 -1573 CCDC15 coiled-coil domain containing 15 632104 5 5 3 1 0 1 0 0 4 0 0.036 0.41 -1574 ATP6V1E2 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 153440 3 3 3 1 1 1 1 0 0 0 0.036 0.41 -1575 EXOC6 exocyst complex component 6 566552 8 6 8 5 2 1 4 0 1 0 0.036 0.41 -1576 TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa 829696 8 8 8 1 1 4 1 0 2 0 0.036 0.41 -1577 ZNF318 zinc finger protein 318 1450848 11 11 11 1 4 3 0 0 4 0 0.036 0.41 -1578 AMPH amphiphysin 477824 9 8 8 3 4 4 0 0 1 0 0.036 0.41 -1579 PCDHB13 protocadherin beta 13 499688 7 7 7 7 1 5 1 0 0 0 0.036 0.41 -1580 OR2B11 olfactory receptor, family 2, subfamily B, member 11 214592 4 4 4 3 3 1 0 0 0 0 0.036 0.41 -1581 PAGE2 P antigen family, member 2 (prostate associated) 74144 2 2 2 0 0 2 0 0 0 0 0.036 0.41 -1582 PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 252224 5 5 5 1 2 1 1 0 1 0 0.036 0.41 -1583 CENPN centromere protein N 286048 5 5 5 1 4 0 0 0 1 0 0.036 0.41 -1584 ZNF24 zinc finger protein 24 250656 6 5 6 0 1 3 1 0 1 0 0.036 0.41 -1585 COL5A2 collagen, type V, alpha 2 1041152 13 11 13 3 3 5 3 1 1 0 0.036 0.41 -1586 COL5A1 collagen, type V, alpha 1 1207388 16 14 16 11 11 1 0 0 4 0 0.036 0.41 -1587 FRMPD1 FERM and PDZ domain containing 1 1069740 18 12 18 4 6 7 4 0 1 0 0.037 0.42 -1588 CHAC2 ChaC, cation transport regulator homolog 2 (E. coli) 127008 2 2 2 0 0 1 0 0 1 0 0.037 0.42 -1589 GPR161 G protein-coupled receptor 161 353332 7 7 7 1 2 2 1 0 2 0 0.037 0.42 -1590 IRS4 insulin receptor substrate 4 794024 15 12 15 5 6 7 1 0 1 0 0.037 0.42 -1591 HBB hemoglobin, beta 102144 3 3 2 0 0 3 0 0 0 0 0.037 0.42 -1592 RPS16 ribosomal protein S16 103264 2 2 2 0 0 0 0 1 1 0 0.037 0.42 -1593 LIPI lipase, member I 330932 6 5 6 3 0 2 2 0 2 0 0.037 0.42 -1594 TCL1B T-cell leukemia/lymphoma 1B 89376 2 2 2 0 1 0 0 0 1 0 0.037 0.42 -1595 GRIA2 glutamate receptor, ionotropic, AMPA 2 634144 12 10 11 5 4 3 5 0 0 0 0.037 0.42 -1596 C1orf173 chromosome 1 open reading frame 173 1034984 17 11 17 6 1 9 6 0 1 0 0.037 0.42 -1597 CCR3 chemokine (C-C motif) receptor 3 242368 4 4 4 2 2 2 0 0 0 0 0.037 0.42 -1598 RXFP3 relaxin/insulin-like family peptide receptor 3 293596 6 6 5 3 4 1 1 0 0 0 0.037 0.42 -1599 SRR serine racemase 235424 3 3 3 0 0 1 1 0 1 0 0.037 0.42 -1600 PRRG4 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) 157024 2 2 2 0 1 0 0 0 1 0 0.037 0.42 -1601 PIKFYVE 1449728 20 14 20 5 10 5 4 0 1 0 0.037 0.42 -1602 IDH3A isocitrate dehydrogenase 3 (NAD+) alpha 250656 4 4 4 1 0 2 2 0 0 0 0.037 0.42 -1603 TSSK1B testis-specific serine kinase 1B 248192 7 6 7 1 5 0 1 0 1 0 0.037 0.42 -1604 PARP15 poly (ADP-ribose) polymerase family, member 15 306208 5 5 5 1 1 2 1 0 1 0 0.037 0.42 -1605 CCBL2 cysteine conjugate-beta lyase 2 317408 5 5 5 1 2 2 1 0 0 0 0.038 0.42 -1606 ANGEL2 angel homolog 2 (Drosophila) 374304 5 5 5 2 0 1 3 0 1 0 0.038 0.42 -1607 SGMS2 sphingomyelin synthase 2 250432 7 5 7 1 2 1 2 0 0 2 0.038 0.42 -1608 GNRHR gonadotropin-releasing hormone receptor 223776 4 4 4 0 2 2 0 0 0 0 0.038 0.42 -1609 KBTBD3 kelch repeat and BTB (POZ) domain containing 3 413728 7 6 7 2 0 4 2 0 1 0 0.038 0.42 -1610 LAMA2 laminin, alpha 2 (merosin, congenital muscular dystrophy) 2146792 25 17 25 11 3 8 8 0 6 0 0.038 0.42 -1611 SNX25 sorting nexin 25 581280 8 7 8 1 2 2 2 0 0 2 0.038 0.42 -1612 MTERFD1 MTERF domain containing 1 287168 6 4 6 1 0 2 2 0 2 0 0.038 0.42 -1613 DCN decorin 248192 4 4 4 0 2 0 1 0 1 0 0.038 0.42 -1614 IL1RAPL1 interleukin 1 receptor accessory protein-like 1 477344 8 7 8 2 2 3 2 0 1 0 0.038 0.43 -1615 SLC23A2 solute carrier family 23 (nucleobase transporters), member 2 445284 7 7 7 2 3 1 1 0 2 0 0.038 0.43 -1616 HRSP12 heat-responsive protein 12 98112 3 3 2 0 2 0 0 0 1 0 0.038 0.43 -1617 CYSLTR2 cysteinyl leukotriene receptor 2 234080 4 4 4 0 2 2 0 0 0 0 0.038 0.43 -1618 FTMT ferritin mitochondrial 151424 4 4 4 2 2 2 0 0 0 0 0.038 0.43 -1619 CTHRC1 collagen triple helix repeat containing 1 133056 5 4 5 0 3 1 0 0 1 0 0.038 0.43 -1620 STX7 syntaxin 7 184128 3 3 2 0 0 1 0 0 2 0 0.038 0.43 -1621 CASP8AP2 CASP8 associated protein 2 1309068 18 12 17 2 5 7 3 0 3 0 0.038 0.43 -1622 ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) 349888 10 7 10 1 3 4 3 0 0 0 0.038 0.43 -1623 COPB1 coatomer protein complex, subunit beta 1 659904 9 8 8 0 5 3 1 0 0 0 0.039 0.43 -1624 PTCD2 pentatricopeptide repeat domain 2 270368 5 5 5 1 1 4 0 0 0 0 0.039 0.43 -1625 RHOJ ras homolog gene family, member J 148960 3 3 3 2 2 0 0 0 1 0 0.039 0.43 -1626 HRASLS HRAS-like suppressor 116256 2 2 2 0 1 0 0 0 1 0 0.039 0.43 -1627 KLHL18 kelch-like 18 (Drosophila) 393184 6 6 6 1 1 1 2 0 2 0 0.039 0.43 -1628 HIST1H3C histone cluster 1, H3c 92960 3 3 3 0 1 1 0 0 1 0 0.039 0.43 -1629 SYCP2L synaptonemal complex protein 2-like 572320 9 7 9 1 1 2 4 0 2 0 0.039 0.43 -1630 ALPK1 alpha-kinase 1 849184 10 10 10 1 4 5 1 0 0 0 0.039 0.43 -1631 HDC histidine decarboxylase 456288 8 7 8 2 3 3 1 0 1 0 0.039 0.43 -1632 RIF1 RAP1 interacting factor homolog (yeast) 1693216 15 12 15 4 3 3 5 0 2 2 0.039 0.43 -1633 GABRA4 gamma-aminobutyric acid (GABA) A receptor, alpha 4 381024 8 6 7 2 4 1 1 0 2 0 0.039 0.43 -1634 OVCA2 112728 2 2 2 0 0 1 0 0 1 0 0.039 0.43 -1635 CTNND2 catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) 773040 14 12 14 12 6 4 2 0 0 2 0.039 0.43 -1636 C4orf26 chromosome 4 open reading frame 26 89824 3 3 3 1 3 0 0 0 0 0 0.039 0.43 -1637 GPR6 G protein-coupled receptor 6 214592 6 6 6 1 3 1 2 0 0 0 0.039 0.43 -1638 TOPORS topoisomerase I binding, arginine/serine-rich 698124 10 9 10 3 3 3 3 0 1 0 0.039 0.43 -1639 PAPPA2 pappalysin 2 1235808 16 14 16 3 3 7 5 0 1 0 0.039 0.43 -1640 KLHL13 kelch-like 13 (Drosophila) 447104 6 6 6 0 3 1 1 0 1 0 0.039 0.43 -1641 ZNF620 zinc finger protein 620 287840 4 4 4 0 1 2 0 0 1 0 0.039 0.43 -1642 OR12D3 olfactory receptor, family 12, subfamily D, member 3 133700 4 3 4 2 1 3 0 0 0 0 0.039 0.43 -1643 MAGEA12 melanoma antigen family A, 12 212576 4 4 4 1 2 2 0 0 0 0 0.040 0.43 -1644 ARHGEF9 Cdc42 guanine nucleotide exchange factor (GEF) 9 342648 4 4 4 1 1 0 2 0 1 0 0.040 0.43 -1645 VLDLR very low density lipoprotein receptor 585088 6 6 6 1 0 4 0 0 2 0 0.040 0.43 -1646 DCT dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2) 380576 13 8 13 1 7 3 1 1 1 0 0.040 0.43 -1647 OR6C75 olfactory receptor, family 6, subfamily C, member 75 211232 4 3 4 0 0 2 1 0 1 0 0.040 0.43 -1648 RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) 324976 7 7 7 0 3 2 2 0 0 0 0.040 0.43 -1649 CD22 CD22 molecule 581504 11 9 11 4 3 7 0 0 1 0 0.040 0.43 -1650 TRPC7 transient receptor potential cation channel, subfamily C, member 7 572968 9 8 9 3 4 3 0 0 2 0 0.040 0.43 -1651 IL3 interleukin 3 (colony-stimulating factor, multiple) 107296 3 3 2 1 3 0 0 0 0 0 0.040 0.43 -1652 JAK2 Janus kinase 2 (a protein tyrosine kinase) 781984 11 7 11 1 2 2 1 0 2 4 0.040 0.43 -1653 RPL9 ribosomal protein L9 135072 4 4 4 0 2 0 2 0 0 0 0.040 0.43 -1654 LYG1 lysozyme G-like 1 135520 3 3 3 0 1 1 1 0 0 0 0.040 0.43 -1655 TMEM167A 52640 1 1 1 0 0 0 0 0 1 0 0.040 0.43 -1656 TTPA tocopherol (alpha) transfer protein 145376 3 3 3 0 1 1 0 0 1 0 0.040 0.43 -1657 CATSPERB cation channel, sperm-associated, beta 773920 14 10 14 1 4 6 3 0 1 0 0.040 0.43 -1658 VN1R1 vomeronasal 1 receptor 1 238784 4 4 4 0 0 3 1 0 0 0 0.040 0.43 -1659 HPS1 Hermansky-Pudlak syndrome 1 444204 5 5 4 1 2 0 0 0 3 0 0.040 0.43 -1660 YIPF1 Yip1 domain family, member 1 213472 4 3 4 0 0 2 0 0 2 0 0.040 0.43 -1661 OR13C8 olfactory receptor, family 13, subfamily C, member 8 216608 4 4 4 1 0 4 0 0 0 0 0.040 0.44 -1662 FGF11 fibroblast growth factor 11 124544 3 3 3 0 1 1 1 0 0 0 0.040 0.44 -1663 HTN1 histatin 1 42560 1 1 1 0 0 0 0 0 1 0 0.040 0.44 -1664 TAAR5 trace amine associated receptor 5 228032 6 5 6 3 2 2 2 0 0 0 0.040 0.44 -1665 LPAR3 lysophosphatidic acid receptor 3 239680 5 5 5 1 4 1 0 0 0 0 0.040 0.44 -1666 LALBA lactalbumin, alpha- 99680 2 2 1 0 2 0 0 0 0 0 0.040 0.44 -1667 MYBPH myosin binding protein H 329956 5 5 5 1 3 1 1 0 0 0 0.040 0.44 -1668 RGAG1 retrotransposon gag domain containing 1 935200 12 8 12 4 3 6 0 0 1 2 0.040 0.44 -1669 PARVB parvin, beta 280000 5 5 5 2 3 0 1 0 1 0 0.040 0.44 -1670 DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 602560 9 8 8 3 6 2 0 0 1 0 0.040 0.44 -1671 TEX15 testis expressed 15 1878464 29 14 29 9 3 13 8 0 2 3 0.040 0.44 -1672 OR4K15 olfactory receptor, family 4, subfamily K, member 15 235424 5 5 5 1 1 4 0 0 0 0 0.040 0.44 -1673 ANKMY2 ankyrin repeat and MYND domain containing 2 305984 5 5 5 1 0 3 1 0 1 0 0.040 0.44 -1674 CAMK1G calcium/calmodulin-dependent protein kinase IG 330400 5 5 5 3 1 2 1 0 1 0 0.040 0.44 -1675 TFEC transcription factor EC 240128 3 3 3 1 1 0 0 0 2 0 0.040 0.44 -1676 PRB4 proline-rich protein BstNI subfamily 4 169344 3 3 3 1 1 2 0 0 0 0 0.041 0.44 -1677 STK32B serine/threonine kinase 32B 285688 5 5 5 4 2 1 1 0 1 0 0.041 0.44 -1678 GUCY2C guanylate cyclase 2C (heat stable enterotoxin receptor) 745920 8 8 8 1 1 2 4 0 1 0 0.041 0.44 -1679 LRRTM2 leucine rich repeat transmembrane neuronal 2 349216 6 5 6 1 1 2 2 1 0 0 0.041 0.44 -1680 FAM54A family with sequence similarity 54, member A 265664 5 5 5 0 3 2 0 0 0 0 0.041 0.44 -1681 ZNF44 zinc finger protein 44 415968 7 6 7 2 2 3 1 0 1 0 0.041 0.44 -1682 RAB40C RAB40C, member RAS oncogene family 182616 3 3 1 0 0 0 0 0 3 0 0.041 0.44 -1683 C1orf150 chromosome 1 open reading frame 150 95872 2 2 2 0 0 1 1 0 0 0 0.041 0.44 -1684 CCNA1 cyclin A1 321216 6 5 6 1 2 1 2 0 1 0 0.041 0.44 -1685 DYNC1I2 dynein, cytoplasmic 1, intermediate chain 2 413088 6 5 6 0 1 2 1 0 2 0 0.041 0.44 -1686 PCDHB12 protocadherin beta 12 505064 11 10 10 6 7 2 1 1 0 0 0.041 0.44 -1687 PRPF4 PRP4 pre-mRNA processing factor 4 homolog (yeast) 364000 4 4 4 2 1 1 0 0 2 0 0.041 0.44 -1688 ZNF556 zinc finger protein 556 309736 4 4 3 3 0 1 1 0 2 0 0.041 0.44 -1689 PGBD3 piggyBac transposable element derived 3 400064 8 7 8 0 5 1 2 0 0 0 0.041 0.44 -1690 DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 616176 9 9 9 2 5 1 0 0 3 0 0.041 0.44 -1691 CXADR coxsackie virus and adenovirus receptor 241696 4 4 4 1 0 1 1 0 2 0 0.041 0.44 -1692 OCRL oculocerebrorenal syndrome of Lowe 618016 9 8 9 2 2 4 2 0 1 0 0.041 0.44 -1693 STRA8 stimulated by retinoic acid gene 8 homolog (mouse) 194888 3 3 3 1 0 1 0 0 2 0 0.041 0.44 -1694 MPZL2 myelin protein zero-like 2 149632 4 4 4 1 1 2 1 0 0 0 0.041 0.44 -1695 TAGLN transgelin 139328 4 4 4 0 3 1 0 0 0 0 0.041 0.44 -1696 OR52E6 olfactory receptor, family 52, subfamily E, member 6 211904 5 4 5 0 0 4 1 0 0 0 0.041 0.44 -1697 TNS1 tensin 1 1189064 14 13 14 9 3 8 1 1 1 0 0.041 0.44 -1698 KCNH8 potassium voltage-gated channel, subfamily H (eag-related), member 8 758912 9 8 9 4 1 2 3 0 3 0 0.041 0.44 -1699 SLC25A43 solute carrier family 25, member 43 171808 3 3 3 0 0 2 1 0 0 0 0.041 0.44 -1700 B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 265440 5 5 5 1 1 0 3 0 1 0 0.041 0.44 -1701 KIAA1598 KIAA1598 424840 5 5 5 1 1 1 1 0 2 0 0.042 0.44 -1702 C7orf63 621824 11 7 10 1 4 1 4 0 2 0 0.042 0.44 -1703 HYAL4 hyaluronoglucosaminidase 4 326592 4 4 3 1 0 1 1 0 2 0 0.042 0.44 -1704 CALD1 caldesmon 1 541120 9 8 9 6 2 3 4 0 0 0 0.042 0.44 -1705 PLUNC palate, lung and nasal epithelium associated 178976 3 3 3 2 1 1 0 0 1 0 0.042 0.44 -1706 OR2T11 olfactory receptor, family 2, subfamily T, member 11 213920 4 4 4 1 3 1 0 0 0 0 0.042 0.44 -1707 DCTD dCMP deaminase 126336 3 3 3 3 1 0 2 0 0 0 0.042 0.44 -1708 CCPG1 cell cycle progression 1 515648 6 6 6 2 1 2 1 0 2 0 0.042 0.44 -1709 OR2W1 olfactory receptor, family 2, subfamily W, member 1 135380 4 3 4 2 0 0 3 1 0 0 0.042 0.44 -1710 TIGD4 tigger transposable element derived 4 345632 8 5 8 1 2 3 0 0 3 0 0.042 0.44 -1711 ZNF431 zinc finger protein 431 392224 7 5 7 0 0 4 0 0 1 2 0.042 0.44 -1712 SLCO1C1 solute carrier organic anion transporter family, member 1C1 493920 7 6 7 2 1 2 3 0 1 0 0.042 0.44 -1713 BTBD10 BTB (POZ) domain containing 10 327040 5 5 5 2 1 2 2 0 0 0 0.042 0.44 -1714 SPTA1 spectrin, alpha, erythrocytic 1 (elliptocytosis 2) 1672832 22 15 22 7 5 5 12 0 0 0 0.042 0.44 -1715 KLK4 kallikrein-related peptidase 4 172168 5 5 5 0 2 1 0 1 1 0 0.042 0.44 -1716 TRIM22 tripartite motif-containing 22 341600 8 7 8 0 3 2 3 0 0 0 0.042 0.44 -1717 LZTFL1 leucine zipper transcription factor-like 1 210560 2 2 2 0 0 0 0 0 2 0 0.042 0.44 -1718 TMEM31 transmembrane protein 31 115360 3 3 3 0 1 0 1 0 1 0 0.042 0.44 -1719 MMP19 matrix metallopeptidase 19 350112 6 6 6 1 2 4 0 0 0 0 0.042 0.44 -1720 RBM46 RNA binding motif protein 46 360164 7 5 7 1 1 3 1 0 2 0 0.042 0.44 -1721 SPDYA speedy homolog A (Drosophila) 218848 3 3 3 0 0 1 2 0 0 0 0.042 0.44 -1722 ANP32D acidic (leucine-rich) nuclear phosphoprotein 32 family, member D 89600 2 2 2 0 0 1 1 0 0 0 0.042 0.44 -1723 GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) 688352 10 8 10 3 3 4 2 0 1 0 0.043 0.45 -1724 ZNF26 zinc finger protein 26 362432 6 6 6 1 3 1 2 0 0 0 0.043 0.45 -1725 IL21 interleukin 21 114016 2 2 2 0 1 0 0 0 1 0 0.043 0.45 -1726 GPS2 G protein pathway suppressor 2 223528 4 4 4 0 1 0 1 0 2 0 0.043 0.45 -1727 PAX3 paired box 3 357988 7 7 6 5 6 1 0 0 0 0 0.043 0.45 -1728 VNN1 vanin 1 351680 6 5 6 2 2 2 2 0 0 0 0.043 0.45 -1729 GPX6 glutathione peroxidase 6 (olfactory) 153664 3 3 3 2 0 0 2 0 1 0 0.043 0.45 -1730 ELK3 ELK3, ETS-domain protein (SRF accessory protein 2) 277760 4 4 4 0 0 0 2 0 2 0 0.043 0.45 -1731 TWF1 twinfilin, actin-binding protein, homolog 1 (Drosophila) 237440 5 4 5 1 0 3 1 0 1 0 0.043 0.45 -1732 KRTAP11-1 keratin associated protein 11-1 111104 2 2 2 0 0 2 0 0 0 0 0.043 0.45 -1733 EDNRA endothelin receptor type A 293888 4 4 4 0 0 2 1 0 1 0 0.043 0.45 -1734 GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 327264 7 6 7 1 1 2 2 0 2 0 0.043 0.45 -1735 GIMAP8 GTPase, IMAP family member 8 451136 9 8 9 1 5 3 0 0 1 0 0.043 0.45 -1736 MBOAT2 membrane bound O-acyltransferase domain containing 2 344064 8 6 7 1 4 2 2 0 0 0 0.043 0.45 -1737 MMP9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) 405784 11 9 11 3 8 1 2 0 0 0 0.043 0.45 -1738 ZNF555 zinc finger protein 555 422100 6 5 6 0 1 2 0 0 1 2 0.043 0.45 -1739 FAM57B family with sequence similarity 57, member B 160636 4 4 4 0 2 1 0 0 1 0 0.043 0.45 -1740 C20orf107 chromosome 20 open reading frame 107 117376 5 3 5 1 2 1 1 0 1 0 0.043 0.45 -1741 GPR19 G protein-coupled receptor 19 280448 4 4 4 0 0 3 1 0 0 0 0.043 0.45 -1742 OR10G7 olfactory receptor, family 10, subfamily G, member 7 210560 3 3 3 2 1 1 1 0 0 0 0.043 0.45 -1743 MUC21 361536 5 4 5 1 1 3 1 0 0 0 0.043 0.45 -1744 OR6C76 olfactory receptor, family 6, subfamily C, member 76 210980 3 3 3 0 0 2 1 0 0 0 0.043 0.45 -1745 KCNA3 potassium voltage-gated channel, shaker-related subfamily, member 3 336420 10 8 9 3 5 2 3 0 0 0 0.043 0.45 -1746 OR4N4 olfactory receptor, family 4, subfamily N, member 4 213920 5 5 5 1 0 2 3 0 0 0 0.043 0.45 -1747 PLXNA4 plexin A4 1368912 28 16 28 11 15 9 3 0 1 0 0.044 0.45 -1748 RAB39 RAB39, member RAS oncogene family 144528 3 3 3 0 2 0 1 0 0 0 0.044 0.45 -1749 WDR72 WD repeat domain 72 758240 13 8 13 5 2 6 4 0 1 0 0.044 0.45 -1750 BEND5 175840 5 5 4 0 3 2 0 0 0 0 0.044 0.45 -1751 POPDC3 popeye domain containing 3 198912 4 4 3 1 0 4 0 0 0 0 0.044 0.45 -1752 MRAP2 141120 4 3 4 0 0 3 1 0 0 0 0.044 0.45 -1753 C19orf43 chromosome 19 open reading frame 43 43456 2 2 2 0 0 2 0 0 0 0 0.044 0.45 -1754 CRNKL1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) 573916 8 8 8 2 3 1 1 0 3 0 0.044 0.45 -1755 PAK3 p21 (CDKN1A)-activated kinase 3 395520 5 5 5 1 0 4 0 0 1 0 0.044 0.45 -1756 ADAD1 adenosine deaminase domain containing 1 (testis-specific) 397600 7 6 7 1 2 2 2 0 1 0 0.044 0.45 -1757 RNF111 ring finger protein 111 674912 6 5 6 3 0 1 2 0 1 2 0.044 0.45 -1758 LOC642587 49728 2 2 2 0 0 1 1 0 0 0 0.044 0.45 -1759 MACROD2 MACRO domain containing 2 317856 6 5 6 4 2 3 1 0 0 0 0.044 0.45 -1760 JAKMIP1 janus kinase and microtubule interacting protein 1 518184 10 9 10 2 6 1 2 0 1 0 0.044 0.45 -1761 LHX9 LIM homeobox 9 272468 6 6 6 2 2 2 1 0 1 0 0.044 0.45 -1762 CTBS chitobiase, di-N-acetyl- 238560 4 4 4 0 1 1 1 0 1 0 0.044 0.45 -1763 C20orf85 chromosome 20 open reading frame 85 96320 2 2 2 1 0 1 0 0 1 0 0.044 0.45 -1764 ODZ3 odz, odd Oz/ten-m homolog 3 (Drosophila) 1742648 29 18 29 6 12 9 4 0 4 0 0.044 0.45 -1765 BCL2A1 BCL2-related protein A1 133504 3 2 3 1 0 0 2 0 1 0 0.045 0.45 -1766 E2F5 E2F transcription factor 5, p130-binding 195988 2 2 2 0 0 0 0 0 2 0 0.045 0.45 -1767 HMSD histocompatibility (minor) serpin domain containing 96768 2 2 2 0 0 0 1 0 1 0 0.045 0.45 -1768 FAM176A 104608 3 3 3 1 3 0 0 0 0 0 0.045 0.46 -1769 DTD1 D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae) 135072 2 2 2 2 1 0 0 0 1 0 0.045 0.46 -1770 KLF8 Kruppel-like factor 8 246344 4 4 4 2 2 2 0 0 0 0 0.045 0.46 -1771 FAM190B 569536 7 7 7 2 4 2 0 0 1 0 0.045 0.46 -1772 RIPK3 receptor-interacting serine-threonine kinase 3 357728 4 4 4 3 1 0 1 1 1 0 0.045 0.46 -1773 ZNF619 zinc finger protein 619 370720 7 5 7 0 2 2 1 0 2 0 0.045 0.46 -1774 ELOVL4 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 217056 4 4 4 2 0 1 3 0 0 0 0.045 0.46 -1775 ACMSD aminocarboxymuconate semialdehyde decarboxylase 235424 4 4 4 0 3 0 1 0 0 0 0.045 0.46 -1776 MRPS24 mitochondrial ribosomal protein S24 93296 2 2 2 0 1 0 0 0 1 0 0.045 0.46 -1777 FBXL13 F-box and leucine-rich repeat protein 13 510720 6 5 6 1 0 1 2 0 3 0 0.045 0.46 -1778 CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant 414764 7 6 7 1 1 2 3 0 1 0 0.045 0.46 -1779 SEMA4D sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D 665176 13 11 12 2 7 5 1 0 0 0 0.045 0.46 -1780 LRP12 low density lipoprotein-related protein 12 584192 8 8 8 2 3 1 2 1 1 0 0.045 0.46 -1781 SRRM1 serine/arginine repetitive matrix 1 623392 11 9 11 1 3 4 3 0 1 0 0.045 0.46 -1782 TRDMT1 tRNA aspartic acid methyltransferase 1 259600 5 5 5 1 1 3 0 0 1 0 0.045 0.46 -1783 IQGAP2 IQ motif containing GTPase activating protein 2 1080128 12 10 12 3 4 4 3 0 1 0 0.045 0.46 -1784 C12orf29 chromosome 12 open reading frame 29 225344 3 3 3 0 0 1 1 0 1 0 0.045 0.46 -1785 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) 457184 6 6 6 2 2 2 1 0 1 0 0.045 0.46 -1786 CYP4F12 cytochrome P450, family 4, subfamily F, polypeptide 12 362964 6 6 6 1 2 1 2 0 1 0 0.045 0.46 -1787 PLEKHA9 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 9 264320 6 5 6 2 0 3 2 0 1 0 0.046 0.46 -1788 LPPR5 215208 3 3 3 0 0 1 0 0 2 0 0.046 0.46 -1789 OSTN osteocrin 92736 3 3 2 0 2 0 1 0 0 0 0.046 0.46 -1790 C1orf50 chromosome 1 open reading frame 50 108248 2 2 2 0 0 0 2 0 0 0 0.046 0.46 -1791 OR1L6 olfactory receptor, family 1, subfamily L, member 6 210112 4 4 4 1 0 2 2 0 0 0 0.046 0.46 -1792 BCL2L11 BCL2-like 11 (apoptosis facilitator) 136416 3 3 2 0 2 0 0 0 1 0 0.046 0.46 -1793 PI15 peptidase inhibitor 15 178528 6 5 6 0 3 3 0 0 0 0 0.046 0.46 -1794 TMEM135 transmembrane protein 135 321888 3 3 3 0 0 0 0 0 3 0 0.046 0.46 -1795 ZBTB24 zinc finger and BTB domain containing 24 476672 8 6 7 1 1 3 2 0 2 0 0.046 0.46 -1796 GPR101 G protein-coupled receptor 101 342944 7 7 7 4 5 1 0 0 1 0 0.046 0.46 -1797 EXD1 355040 5 5 5 0 0 2 3 0 0 0 0.046 0.46 -1798 FAM116A family with sequence similarity 116, member A 396284 6 6 6 0 2 1 1 0 2 0 0.046 0.46 -1799 TRIM24 tripartite motif-containing 24 673204 7 7 6 1 1 2 1 0 3 0 0.046 0.46 -1800 CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 333144 6 6 6 0 4 0 1 0 1 0 0.046 0.46 -1801 SLC6A5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 528864 9 9 9 3 4 3 1 0 1 0 0.046 0.46 -1802 GPR158 G protein-coupled receptor 158 762448 14 10 13 4 5 5 2 0 2 0 0.046 0.46 -1803 GJB7 gap junction protein, beta 7, 25kDa 151424 2 2 2 1 0 0 1 0 1 0 0.046 0.46 -1804 SEC24B SEC24 related gene family, member B (S. cerevisiae) 843584 9 9 9 0 2 4 3 0 0 0 0.046 0.46 -1805 KCNK2 potassium channel, subfamily K, member 2 302848 5 5 5 4 0 3 1 0 1 0 0.046 0.46 -1806 FKBP11 FK506 binding protein 11, 19 kDa 134320 3 3 3 0 1 0 1 0 1 0 0.046 0.46 -1807 C2orf18 chromosome 2 open reading frame 18 244256 4 4 4 0 2 2 0 0 0 0 0.046 0.46 -1808 CRYBB1 crystallin, beta B1 173404 7 5 7 1 6 1 0 0 0 0 0.046 0.46 -1809 ATXN1 ataxin 1 529060 8 8 8 3 2 2 1 0 3 0 0.046 0.46 -1810 PPP1R1C protein phosphatase 1, regulatory (inhibitor) subunit 1C 66296 2 2 2 0 0 0 1 0 1 0 0.047 0.46 -1811 CUZD1 CUB and zona pellucida-like domains 1 416640 5 4 5 2 0 1 2 0 2 0 0.047 0.46 -1812 OR4X1 olfactory receptor, family 4, subfamily X, member 1 206528 4 4 4 1 0 4 0 0 0 0 0.047 0.46 -1813 PGK2 phosphoglycerate kinase 2 281792 7 5 7 4 2 4 1 0 0 0 0.047 0.46 -1814 IL32 interleukin 32 128352 3 3 3 0 1 2 0 0 0 0 0.047 0.46 -1815 UBP1 upstream binding protein 1 (LBP-1a) 376124 6 6 6 0 1 1 3 0 1 0 0.047 0.46 -1816 KIR3DL3 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3 221072 4 4 4 3 2 1 1 0 0 0 0.047 0.46 -1817 RCSD1 RCSD domain containing 1 273784 5 5 5 1 2 2 1 0 0 0 0.047 0.46 -1818 UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) 334152 5 4 5 1 1 1 0 0 1 2 0.047 0.47 -1819 LCP1 lymphocyte cytosolic protein 1 (L-plastin) 435456 7 5 7 0 0 2 3 0 2 0 0.047 0.47 -1820 DZIP1 DAZ interacting protein 1 579236 15 8 15 5 3 5 3 0 4 0 0.047 0.47 -1821 UBA6 ubiquitin-like modifier activating enzyme 6 737184 6 6 6 1 1 2 1 0 2 0 0.047 0.47 -1822 FAM24A family with sequence similarity 24, member A 73024 2 2 2 0 0 2 0 0 0 0 0.047 0.47 -1823 CGA glycoprotein hormones, alpha polypeptide 81312 2 2 2 0 1 0 1 0 0 0 0.047 0.47 -1824 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 329112 4 4 3 5 1 1 0 0 2 0 0.047 0.47 -1825 TRIML2 tripartite motif family-like 2 267008 4 4 4 3 0 2 1 0 1 0 0.047 0.47 -1826 WWOX WW domain containing oxidoreductase 292264 5 5 5 1 3 1 1 0 0 0 0.047 0.47 -1827 GOLGA7B 103320 3 3 3 0 3 0 0 0 0 0 0.047 0.47 -1828 FBXL7 F-box and leucine-rich repeat protein 7 334040 9 8 9 3 6 3 0 0 0 0 0.047 0.47 -1829 PCP4L1 Purkinje cell protein 4 like 1 46144 1 1 1 0 0 0 0 0 1 0 0.047 0.47 -1830 ITIH5 inter-alpha (globulin) inhibitor H5 667336 12 10 11 8 10 1 1 0 0 0 0.047 0.47 -1831 C10orf72 chromosome 10 open reading frame 72 237216 6 5 6 3 4 1 1 0 0 0 0.047 0.47 -1832 EYA4 eyes absent homolog 4 (Drosophila) 470624 9 7 9 0 1 5 2 0 1 0 0.047 0.47 -1833 IFNA10 interferon, alpha 10 128576 3 3 3 0 0 2 1 0 0 0 0.048 0.47 -1834 GRM3 glutamate receptor, metabotropic 3 595840 7 7 7 2 4 1 1 0 1 0 0.048 0.47 -1835 LCE3D late cornified envelope 3D 63392 2 2 2 0 1 1 0 0 0 0 0.048 0.47 -1836 PTGR1 229824 4 3 4 1 0 2 1 0 1 0 0.048 0.47 -1837 HOXA4 homeobox A4 113204 3 3 3 0 1 0 0 0 2 0 0.048 0.47 -1838 CYP2A13 cytochrome P450, family 2, subfamily A, polypeptide 13 340620 7 7 7 1 3 3 0 0 1 0 0.048 0.47 -1839 PIWIL3 piwi-like 3 (Drosophila) 611296 10 8 10 4 4 3 2 0 1 0 0.048 0.47 -1840 PHF3 PHD finger protein 3 1384320 17 10 16 2 1 8 3 0 5 0 0.048 0.47 -1841 NEK7 NIMA (never in mitosis gene a)-related kinase 7 211680 3 3 3 1 0 2 0 0 1 0 0.048 0.47 -1842 LILRB1 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 450468 8 7 8 4 1 3 3 0 1 0 0.048 0.47 -1843 ANP32C acidic (leucine-rich) nuclear phosphoprotein 32 family, member C 158816 3 3 3 0 1 1 0 0 1 0 0.048 0.47 -1844 CBX8 chromobox homolog 8 (Pc class homolog, Drosophila) 261100 4 4 4 0 0 2 0 0 2 0 0.048 0.47 -1845 GPR172B G protein-coupled receptor 172B 305228 4 4 4 0 0 2 1 0 1 0 0.048 0.47 -1846 ZNF827 zinc finger protein 827 736064 10 9 10 3 3 2 3 0 2 0 0.048 0.47 -1847 CDH19 cadherin 19, type 2 526960 7 7 7 6 0 5 2 0 0 0 0.048 0.47 -1848 NSFL1C NSFL1 (p97) cofactor (p47) 232960 5 5 5 0 4 0 1 0 0 0 0.048 0.47 -1849 BTG3 BTG family, member 3 173600 2 2 2 0 0 0 0 0 2 0 0.048 0.47 -1850 PPIG peptidylprolyl isomerase G (cyclophilin G) 511308 7 6 7 1 1 3 2 0 1 0 0.048 0.47 -1851 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 712096 10 9 10 1 3 4 1 1 1 0 0.048 0.47 -1852 KRT82 keratin 82 351876 6 6 6 0 4 0 2 0 0 0 0.048 0.47 -1853 GABRA6 gamma-aminobutyric acid (GABA) A receptor, alpha 6 313152 5 5 5 3 1 2 2 0 0 0 0.048 0.47 -1854 PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 420824 7 7 7 2 4 1 1 0 1 0 0.049 0.47 -1855 IL10RB interleukin 10 receptor, beta 218136 5 4 4 1 1 0 2 0 2 0 0.049 0.47 -1856 OR1A1 olfactory receptor, family 1, subfamily A, member 1 208768 4 4 4 0 2 1 1 0 0 0 0.049 0.47 -1857 RNF217 ring finger protein 217 191744 3 3 3 0 0 0 2 0 1 0 0.049 0.47 -1858 USP29 ubiquitin specific peptidase 29 621152 11 8 10 4 0 8 2 0 1 0 0.049 0.47 -1859 GUCY1B3 guanylate cyclase 1, soluble, beta 3 428596 9 8 9 0 3 4 2 0 0 0 0.049 0.47 -1860 NRG2 neuregulin 2 337128 6 6 5 0 2 2 0 0 2 0 0.049 0.47 -1861 TMEM163 transmembrane protein 163 155904 3 3 3 2 1 2 0 0 0 0 0.049 0.47 -1862 TULP4 tubby like protein 4 1025120 15 13 15 1 6 2 3 0 4 0 0.049 0.47 -1863 TOP1 topoisomerase (DNA) I 525144 8 7 8 1 1 3 2 0 2 0 0.049 0.47 -1864 MORC1 MORC family CW-type zinc finger 1 687008 11 8 10 3 1 4 6 0 0 0 0.049 0.47 -1865 MCCC1 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 491484 8 8 8 1 7 1 0 0 0 0 0.049 0.47 -1866 UGDH UDP-glucose dehydrogenase 342496 4 4 4 1 0 2 0 0 2 0 0.049 0.47 -1867 SLC35F3 solute carrier family 35, member F3 324832 5 5 4 2 3 1 1 0 0 0 0.049 0.47 -1868 IFNA5 interferon, alpha 5 128576 1 1 1 0 0 0 0 0 1 0 0.049 0.47 -1869 LACTB lactamase, beta 293664 3 3 3 0 1 1 0 0 1 0 0.049 0.47 -1870 ACSBG2 acyl-CoA synthetase bubblegum family member 2 459736 8 7 8 4 4 3 0 0 1 0 0.049 0.47 -1871 CEP135 centrosomal protein 135kDa 788256 9 8 9 0 2 2 2 0 3 0 0.049 0.47 -1872 VPS36 vacuolar protein sorting 36 homolog (S. cerevisiae) 272356 4 4 4 0 1 0 1 1 1 0 0.049 0.47 -1873 CCDC99 coiled-coil domain containing 99 417088 8 6 8 2 3 0 4 0 1 0 0.049 0.47 -1874 ITGB3BP integrin beta 3 binding protein (beta3-endonexin) 126784 3 2 3 0 0 0 2 0 1 0 0.049 0.47 -1875 DNAJC28 262304 5 3 5 3 1 0 1 0 1 2 0.049 0.47 -1876 SNX7 sorting nexin 7 270144 3 3 3 0 0 2 0 0 1 0 0.049 0.47 -1877 REV3L REV3-like, catalytic subunit of DNA polymerase zeta (yeast) 2120692 24 14 24 5 5 7 7 0 2 3 0.049 0.47 -1878 OR8B8 olfactory receptor, family 8, subfamily B, member 8 210560 3 3 3 2 1 1 1 0 0 0 0.049 0.47 -1879 HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 124376 3 3 3 0 0 2 1 0 0 0 0.049 0.47 -1880 OR10H2 olfactory receptor, family 10, subfamily H, member 2 213248 4 4 4 2 2 2 0 0 0 0 0.049 0.47 -1881 NPY neuropeptide Y 68544 2 2 2 2 1 1 0 0 0 0 0.049 0.47 -1882 CCR1 chemokine (C-C motif) receptor 1 240128 5 5 5 1 0 3 2 0 0 0 0.049 0.47 -1883 C2orf62 chromosome 2 open reading frame 62 258440 4 4 4 0 1 1 1 0 1 0 0.050 0.47 -1884 PSMA8 proteasome (prosome, macropain) subunit, alpha type, 8 178976 3 3 3 0 0 1 0 0 2 0 0.050 0.47 -1885 POLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa 42336 1 1 1 0 0 0 1 0 0 0 0.050 0.47 -1886 LNX1 ligand of numb-protein X 1 520352 11 8 11 0 4 5 1 0 1 0 0.050 0.47 -1887 LZIC leucine zipper and CTNNBIP1 domain containing 133728 2 2 2 0 0 0 2 0 0 0 0.050 0.48 -1888 C15orf57 134624 2 2 2 0 0 1 0 0 1 0 0.050 0.48 -1889 GSTCD glutathione S-transferase, C-terminal domain containing 435904 5 5 5 1 1 2 1 0 1 0 0.050 0.48 -1890 FNDC3A fibronectin type III domain containing 3A 830592 8 8 8 2 1 2 4 0 1 0 0.050 0.48 -1891 C1orf129 chromosome 1 open reading frame 129 398272 7 6 7 5 2 4 1 0 0 0 0.050 0.48 -1892 TCP10 t-complex 10 homolog (mouse) 167240 2 2 2 0 0 1 0 0 1 0 0.050 0.48 -1893 OR10T2 olfactory receptor, family 10, subfamily T, member 2 212576 4 4 4 0 0 3 1 0 0 0 0.050 0.48 -1894 DUSP22 dual specificity phosphatase 22 131488 3 3 3 1 1 0 1 0 1 0 0.050 0.48 -1895 KCNK9 potassium channel, subfamily K, member 9 248920 6 6 6 3 4 1 0 0 1 0 0.050 0.48 -1896 ESRRG estrogen-related receptor gamma 314720 6 6 6 2 2 1 3 0 0 0 0.050 0.48 -1897 GKN2 gastrokine 2 129696 2 2 2 1 0 0 2 0 0 0 0.050 0.48 -1898 C8orf42 chromosome 8 open reading frame 42 102592 3 3 3 0 2 0 1 0 0 0 0.050 0.48 -1899 CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2 360864 8 7 8 1 4 3 0 1 0 0 0.050 0.48 -1900 PGK1 phosphoglycerate kinase 1 191880 3 3 3 2 0 1 2 0 0 0 0.050 0.48 -1901 VANGL2 vang-like 2 (van gogh, Drosophila) 357056 5 5 5 2 2 1 0 0 2 0 0.050 0.48 -1902 PTPLAD2 protein tyrosine phosphatase-like A domain containing 2 153440 2 2 2 0 1 0 0 0 1 0 0.051 0.48 -1903 TMEM43 transmembrane protein 43 278880 4 4 4 1 1 3 0 0 0 0 0.051 0.48 -1904 MXI1 MAX interactor 1 181188 3 3 3 0 0 0 2 0 1 0 0.051 0.48 -1905 IL17A interleukin 17A 107520 2 2 2 0 2 0 0 0 0 0 0.051 0.48 -1906 SMC1A structural maintenance of chromosomes 1A 847160 10 10 10 2 7 0 1 1 1 0 0.051 0.48 -1907 NR4A2 nuclear receptor subfamily 4, group A, member 2 391440 7 7 6 1 4 2 0 0 1 0 0.051 0.48 -1908 SGK2 serum/glucocorticoid regulated kinase 2 285992 5 5 5 0 3 1 0 0 1 0 0.051 0.48 -1909 ZNF611 zinc finger protein 611 477120 9 8 9 1 1 6 2 0 0 0 0.051 0.48 -1910 KATNAL1 katanin p60 subunit A-like 1 338912 5 5 5 0 4 1 0 0 0 0 0.051 0.48 -1911 XKR3 XK, Kell blood group complex subunit-related family, member 3 311808 5 5 5 1 0 3 2 0 0 0 0.051 0.48 -1912 OR2H1 olfactory receptor, family 2, subfamily H, member 1 133700 4 4 4 0 1 2 0 0 1 0 0.051 0.48 -1913 CETP cholesteryl ester transfer protein, plasma 346304 7 6 7 1 3 2 2 0 0 0 0.051 0.48 -1914 LPA lipoprotein, Lp(a) 956144 10 9 10 6 4 2 0 0 4 0 0.051 0.48 -1915 FSCB fibrous sheath CABYR binding protein 544328 10 7 10 0 3 5 0 0 0 2 0.051 0.48 -1916 THAP5 THAP domain containing 5 160384 3 3 2 0 0 2 0 0 1 0 0.051 0.48 -1917 TRIM69 tripartite motif-containing 69 329344 5 5 5 1 0 4 0 0 1 0 0.051 0.48 -1918 C16orf87 107744 4 3 3 0 0 2 1 0 1 0 0.051 0.48 -1919 KCTD7 potassium channel tetramerisation domain containing 7 170912 4 4 4 0 1 0 3 0 0 0 0.052 0.48 -1920 SFPQ splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) 330568 10 7 9 0 5 2 2 0 1 0 0.052 0.48 -1921 KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 233520 5 4 5 0 1 2 0 0 2 0 0.052 0.48 -1922 GPR84 G protein-coupled receptor 84 267680 6 5 6 0 3 1 2 0 0 0 0.052 0.48 -1923 LMX1A LIM homeobox transcription factor 1, alpha 264544 4 4 4 2 2 1 1 0 0 0 0.052 0.48 -1924 HRG histidine-rich glycoprotein 359744 9 7 9 3 3 4 2 0 0 0 0.052 0.49 -1925 ERP27 endoplasmic reticulum protein 27 kDa 190400 3 3 3 1 0 2 1 0 0 0 0.052 0.49 -1926 C17orf95 131936 2 2 2 0 0 1 0 0 1 0 0.052 0.49 -1927 MAGEE1 melanoma antigen family E, 1 609544 8 8 7 4 4 2 1 0 1 0 0.052 0.49 -1928 ANGPTL2 angiopoietin-like 2 335552 8 7 8 1 3 4 0 0 1 0 0.052 0.49 -1929 RMND5B required for meiotic nuclear division 5 homolog B (S. cerevisiae) 272832 5 5 5 0 3 0 0 0 2 0 0.052 0.49 -1930 SLC39A2 solute carrier family 39 (zinc transporter), member 2 211904 4 4 4 0 2 1 1 0 0 0 0.052 0.49 -1931 NLRP10 NLR family, pyrin domain containing 10 442624 7 6 7 1 0 5 2 0 0 0 0.052 0.49 -1932 CACNG5 calcium channel, voltage-dependent, gamma subunit 5 260960 5 5 4 2 2 3 0 0 0 0 0.052 0.49 -1933 GTF2H3 general transcription factor IIH, polypeptide 3, 34kDa 219296 4 4 4 0 2 0 1 0 1 0 0.052 0.49 -1934 CMTM1 CKLF-like MARVEL transmembrane domain containing 1 196448 4 4 4 0 0 2 1 0 1 0 0.052 0.49 -1935 CDCA7L cell division cycle associated 7-like 314720 7 6 6 1 0 4 1 0 2 0 0.052 0.49 -1936 RIC8B resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 346208 5 4 5 0 1 3 0 0 1 0 0.052 0.49 -1937 CSRP2 cysteine and glycine-rich protein 2 134848 4 3 4 0 3 1 0 0 0 0 0.052 0.49 -1938 FPGT fucose-1-phosphate guanylyltransferase 403424 5 5 5 2 1 2 1 0 1 0 0.052 0.49 -1939 SH2D1A SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome) 90272 2 2 2 1 1 0 1 0 0 0 0.052 0.49 -1940 FCRL4 Fc receptor-like 4 357504 4 4 4 1 2 1 0 0 1 0 0.052 0.49 -1941 DEFB116 defensin, beta 116 71008 2 2 2 0 1 1 0 0 0 0 0.052 0.49 -1942 QARS glutaminyl-tRNA synthetase 540456 8 8 8 1 4 0 3 1 0 0 0.053 0.49 -1943 DYTN dystrotelin 399840 9 7 9 0 0 7 2 0 0 0 0.053 0.49 -1944 CHCHD10 57496 1 1 1 1 0 0 0 0 1 0 0.053 0.49 -1945 NLGN1 neuroligin 1 558208 7 6 7 2 3 1 3 0 0 0 0.053 0.49 -1946 SLIT2 slit homolog 2 (Drosophila) 1060640 15 11 15 2 4 7 3 0 1 0 0.053 0.49 -1947 KRTAP13-1 keratin associated protein 13-1 117152 3 3 3 0 0 2 1 0 0 0 0.053 0.49 -1948 COLEC11 collectin sub-family member 11 199108 4 4 4 0 3 0 0 0 1 0 0.053 0.49 -1949 CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 195976 4 3 4 0 0 1 1 0 0 2 0.053 0.49 -1950 VEGFB vascular endothelial growth factor B 108864 2 2 1 0 0 0 0 0 2 0 0.053 0.49 -1951 TAS2R13 taste receptor, type 2, member 13 205184 3 3 3 1 1 2 0 0 0 0 0.053 0.49 -1952 C20orf197 chromosome 20 open reading frame 197 85504 2 2 2 0 1 1 0 0 0 0 0.053 0.49 -1953 DEM1 249620 2 2 2 0 0 0 1 0 1 0 0.053 0.49 -1954 RNF182 ring finger protein 182 167552 3 3 3 2 1 2 0 0 0 0 0.053 0.49 -1955 LRFN2 leucine rich repeat and fibronectin type III domain containing 2 496888 8 8 8 6 4 2 1 0 1 0 0.053 0.49 -1956 CCR9 chemokine (C-C motif) receptor 9 250432 6 5 6 2 0 3 3 0 0 0 0.053 0.49 -1957 USP26 ubiquitin specific peptidase 26 615104 8 7 7 3 3 2 1 0 2 0 0.053 0.49 -1958 GALNT5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) 641312 10 7 10 2 2 5 2 0 1 0 0.053 0.49 -1959 TCN2 transcobalamin II; macrocytic anemia 293916 5 5 5 0 2 3 0 0 0 0 0.053 0.49 -1960 KEL Kell blood group, metallo-endopeptidase 509600 8 8 8 3 5 2 1 0 0 0 0.053 0.49 -1961 THSD7B thrombospondin, type I, domain containing 7B 1078264 12 11 11 4 5 3 3 0 1 0 0.053 0.49 -1962 GALNT13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) 384160 5 4 5 1 0 2 2 0 1 0 0.054 0.49 -1963 GNG3 guanine nucleotide binding protein (G protein), gamma 3 52864 2 2 2 0 0 2 0 0 0 0 0.054 0.49 -1964 ATP13A5 ATPase type 13A5 846048 9 8 9 3 2 4 1 0 2 0 0.054 0.49 -1965 TBC1D28 TBC1 domain family, member 28 128576 4 3 4 1 2 2 0 0 0 0 0.054 0.49 -1966 NOL7 nucleolar protein 7, 27kDa 139908 2 2 2 1 0 0 0 0 2 0 0.054 0.49 -1967 DCLRE1A DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) 707616 9 8 9 1 1 4 3 0 1 0 0.054 0.49 -1968 LCE1A late cornified envelope 1A 75488 2 2 2 0 0 0 2 0 0 0 0.054 0.49 -1969 PLAC1 placenta-specific 1 144032 3 3 3 1 1 1 1 0 0 0 0.054 0.49 -1970 PLG plasminogen 562912 9 8 9 1 7 0 1 0 1 0 0.054 0.49 -1971 MSL2 390208 6 6 6 1 1 2 2 0 1 0 0.054 0.49 -1972 ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 590348 8 7 8 2 3 1 3 0 1 0 0.054 0.49 -1973 PHLDB1 pleckstrin homology-like domain, family B, member 1 896828 8 8 8 3 3 3 1 0 1 0 0.054 0.49 -1974 TTC35 tetratricopeptide repeat domain 35 210112 4 4 4 1 0 2 0 1 1 0 0.054 0.49 -1975 ANKRD55 ankyrin repeat domain 55 423136 7 7 7 0 3 1 2 0 1 0 0.054 0.49 -1976 SYT15 synaptotagmin XV 292752 5 5 5 1 3 1 1 0 0 0 0.054 0.49 -1977 OR4S1 olfactory receptor, family 4, subfamily S, member 1 209216 3 3 3 1 0 3 0 0 0 0 0.054 0.50 -1978 KRTAP15-1 keratin associated protein 15-1 93632 2 2 2 1 0 1 1 0 0 0 0.054 0.50 -1979 UXS1 UDP-glucuronate decarboxylase 1 261208 7 6 7 1 4 2 1 0 0 0 0.054 0.50 -1980 TSPAN8 tetraspanin 8 167104 3 3 3 0 0 1 1 0 1 0 0.055 0.50 -1981 C8A complement component 8, alpha polypeptide 402976 6 6 6 1 2 4 0 0 0 0 0.055 0.50 -1982 ZNF596 zinc finger protein 596 343840 6 5 6 0 1 4 1 0 0 0 0.055 0.50 -1983 EGFL6 EGF-like-domain, multiple 6 383712 6 5 6 1 2 1 0 0 3 0 0.055 0.50 -1984 C8orf47 chromosome 8 open reading frame 47 240800 4 4 4 1 1 3 0 0 0 0 0.055 0.50 -1985 ROR1 receptor tyrosine kinase-like orphan receptor 1 618912 9 8 9 2 3 3 2 1 0 0 0.055 0.50 -1986 OR6C65 olfactory receptor, family 6, subfamily C, member 65 211232 3 3 3 0 0 1 1 0 1 0 0.055 0.50 -1987 KIAA1712 KIAA1712 271712 4 4 4 0 1 2 1 0 0 0 0.055 0.50 -1988 DCST2 DC-STAMP domain containing 2 531804 10 9 10 0 4 5 1 0 0 0 0.055 0.50 -1989 STMN4 stathmin-like 4 151200 3 3 3 0 0 1 1 0 1 0 0.055 0.50 -1990 FBXO40 F-box protein 40 479808 8 6 8 3 3 3 1 0 1 0 0.055 0.50 -1991 KCNS2 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2 319032 6 6 6 0 3 2 1 0 0 0 0.055 0.50 -1992 MDN1 MDN1, midasin homolog (yeast) 3835608 43 24 43 9 13 13 11 0 4 2 0.055 0.50 -1993 AWAT1 227360 4 4 4 0 1 3 0 0 0 0 0.055 0.50 -1994 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 115192 2 2 2 0 0 1 0 0 1 0 0.055 0.50 -1995 RIOK2 RIO kinase 2 (yeast) 382816 4 4 4 0 2 0 0 0 2 0 0.055 0.50 -1996 ZNF675 zinc finger protein 675 385952 6 5 6 2 0 3 1 0 2 0 0.055 0.50 -1997 CD200R1 CD200 receptor 1 243120 8 5 8 2 2 3 3 0 0 0 0.055 0.50 -1998 MEPE matrix, extracellular phosphoglycoprotein with ASARM motif (bone) 356160 5 5 5 0 2 1 2 0 0 0 0.055 0.50 -1999 ASTL astacin-like metallo-endopeptidase (M12 family) 284256 5 5 5 3 1 2 1 0 1 0 0.055 0.50 -2000 HCCS holocytochrome c synthase (cytochrome c heme-lyase) 186144 3 3 3 0 1 1 1 0 0 0 0.055 0.50 -2001 TNFSF13 tumor necrosis factor (ligand) superfamily, member 13 162820 2 2 1 0 0 0 0 0 2 0 0.055 0.50 -2002 CACNA1E calcium channel, voltage-dependent, R type, alpha 1E subunit 1533772 21 18 21 13 12 6 2 0 1 0 0.055 0.50 -2003 PDLIM5 PDZ and LIM domain 5 447776 6 6 6 0 2 1 3 0 0 0 0.056 0.50 -2004 CLCN5 chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease) 550336 5 5 5 6 1 2 1 0 1 0 0.056 0.50 -2005 RFC1 replication factor C (activator 1) 1, 145kDa 792904 14 9 14 1 1 6 4 0 3 0 0.056 0.50 -2006 TSGA10 testis specific, 10 484064 6 5 6 2 1 2 2 0 1 0 0.056 0.50 -2007 RBM26 RNA binding motif protein 26 678048 6 6 6 0 0 2 1 0 3 0 0.056 0.50 -2008 PCDHB15 protocadherin beta 15 493472 9 9 9 5 6 1 1 0 1 0 0.056 0.50 -2009 KIAA1609 KIAA1609 313376 4 4 4 2 0 3 1 0 0 0 0.056 0.50 -2010 COPS4 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) 282464 3 3 3 0 0 1 0 0 2 0 0.056 0.50 -2011 CLCC1 chloride channel CLIC-like 1 379904 6 6 6 1 0 5 0 0 1 0 0.056 0.50 -2012 AP1G2 adaptor-related protein complex 1, gamma 2 subunit 547008 10 8 10 0 3 4 2 0 1 0 0.056 0.50 -2013 ATF6 activating transcription factor 6 465248 7 6 7 2 4 1 1 0 1 0 0.056 0.50 -2014 LGI1 leucine-rich, glioma inactivated 1 378952 5 5 5 1 2 1 0 0 2 0 0.056 0.50 -2015 SCN2B sodium channel, voltage-gated, type II, beta 148736 3 3 3 1 1 1 0 0 1 0 0.056 0.50 -2016 NFYA nuclear transcription factor Y, alpha 241920 3 3 3 1 0 3 0 0 0 0 0.056 0.50 -2017 SLC7A9 solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 338688 6 6 6 2 4 0 1 0 1 0 0.056 0.50 -2018 MANSC1 MANSC domain containing 1 292992 4 4 4 0 1 2 0 0 1 0 0.056 0.50 -2019 TOR1A torsin family 1, member A (torsin A) 211708 5 5 5 1 3 0 1 0 1 0 0.057 0.51 -2020 OR4X2 olfactory receptor, family 4, subfamily X, member 2 205184 4 4 4 0 1 2 1 0 0 0 0.057 0.51 -2021 NLRP3 NLR family, pyrin domain containing 3 704928 16 10 16 3 4 8 2 0 2 0 0.057 0.51 -2022 NPSR1 neuropeptide S receptor 1 283360 6 6 5 0 4 1 1 0 0 0 0.057 0.51 -2023 EIF3A eukaryotic translation initiation factor 3, subunit A 941880 12 10 12 2 6 2 1 1 2 0 0.057 0.51 -2024 UBXN2A 180096 3 3 3 0 1 1 0 0 1 0 0.057 0.51 -2025 TCL1A T-cell leukemia/lymphoma 1A 79968 2 2 2 1 0 0 1 1 0 0 0.057 0.51 -2026 HAO1 hydroxyacid oxidase (glycolate oxidase) 1 256480 5 5 4 2 3 2 0 0 0 0 0.057 0.51 -2027 SFXN2 sideroflexin 2 226912 4 4 4 0 2 1 1 0 0 0 0.057 0.51 -2028 RIPPLY2 ripply2 homolog (zebrafish) 68096 2 2 2 0 0 1 1 0 0 0 0.057 0.51 -2029 ARHGAP24 Rho GTPase activating protein 24 537376 5 5 5 2 1 1 2 0 1 0 0.057 0.51 -2030 KRT37 keratin 37 308672 6 6 6 3 3 3 0 0 0 0 0.057 0.51 -2031 RLBP1 retinaldehyde binding protein 1 219968 6 5 4 3 4 0 1 0 1 0 0.057 0.51 -2032 IGLON5 162524 4 4 4 1 3 1 0 0 0 0 0.057 0.51 -2033 UGT3A2 UDP glycosyltransferase 3 family, polypeptide A2 358400 7 5 7 1 0 5 0 0 2 0 0.057 0.51 -2034 MEIS1 Meis homeobox 1 272688 5 5 5 1 1 3 1 0 0 0 0.057 0.51 -2035 NWD1 NACHT and WD repeat domain containing 1 950432 13 11 13 3 5 6 0 0 2 0 0.057 0.51 -2036 FOXI1 forkhead box I1 241592 5 5 5 2 3 1 1 0 0 0 0.057 0.51 -2037 ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 257376 5 5 5 0 3 1 1 0 0 0 0.057 0.51 -2038 KCNMA1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 801568 12 10 12 6 4 3 4 0 1 0 0.058 0.51 -2039 C7orf58 chromosome 7 open reading frame 58 720160 12 8 12 1 5 1 4 0 2 0 0.058 0.51 -2040 ZC3H18 zinc finger CCCH-type containing 18 612524 8 8 7 1 2 2 0 0 4 0 0.058 0.51 -2041 ZNF451 zinc finger protein 451 707392 10 8 10 0 2 4 3 0 1 0 0.058 0.51 -2042 KCNRG potassium channel regulator 185248 4 3 4 0 0 3 0 0 1 0 0.058 0.51 -2043 VRK2 vaccinia related kinase 2 353944 5 5 5 0 2 1 1 0 1 0 0.058 0.51 -2044 XIRP2 xin actin-binding repeat containing 2 2740864 37 17 36 17 6 9 17 0 5 0 0.058 0.51 -2045 NLRP11 NLR family, pyrin domain containing 11 702912 9 8 9 4 4 1 2 0 2 0 0.058 0.51 -2046 PLK2 polo-like kinase 2 (Drosophila) 472528 7 5 6 0 1 1 1 0 4 0 0.058 0.51 -2047 PACRG PARK2 co-regulated 177856 4 3 4 2 1 1 1 0 1 0 0.058 0.51 -2048 ABCA8 ATP-binding cassette, sub-family A (ABC1), member 8 1096256 17 12 14 2 9 4 3 0 1 0 0.058 0.51 -2049 SNW1 SNW domain containing 1 373408 5 5 5 1 0 3 2 0 0 0 0.058 0.51 -2050 NEGR1 neuronal growth regulator 1 244832 4 4 4 3 2 0 2 0 0 0 0.058 0.51 -2051 DMKN dermokine 345816 6 5 6 1 2 2 1 0 1 0 0.058 0.51 -2052 CAMTA2 calmodulin binding transcription activator 2 832608 7 7 7 1 0 2 2 0 3 0 0.058 0.51 -2053 SLC46A3 solute carrier family 46, member 3 314944 5 4 5 0 1 0 2 0 2 0 0.058 0.51 -2054 TCTA T-cell leukemia translocation altered gene 72576 3 3 3 1 1 2 0 0 0 0 0.058 0.51 -2055 MECOM 850072 10 9 8 1 5 2 0 0 3 0 0.058 0.51 -2056 ZP4 zona pellucida glycoprotein 4 374304 7 6 7 1 2 3 1 0 1 0 0.058 0.51 -2057 LMBRD2 LMBR1 domain containing 2 482944 7 6 7 0 2 2 2 0 1 0 0.058 0.51 -2058 JARID2 jumonji, AT rich interactive domain 2 807260 11 9 11 5 2 4 4 0 1 0 0.059 0.51 -2059 DBX2 developing brain homeobox 2 140896 2 2 2 1 0 0 1 0 1 0 0.059 0.51 -2060 SI sucrase-isomaltase (alpha-glucosidase) 1270528 15 10 15 3 2 6 4 0 3 0 0.059 0.51 -2061 DUSP10 dual specificity phosphatase 10 327264 5 5 5 1 2 2 1 0 0 0 0.059 0.51 -2062 ISPD 254240 4 4 4 0 0 2 1 0 1 0 0.059 0.52 -2063 SCUBE2 signal peptide, CUB domain, EGF-like 2 661024 10 9 9 5 6 2 2 0 0 0 0.059 0.52 -2064 TIAM1 T-cell lymphoma invasion and metastasis 1 1088444 19 13 19 12 10 4 2 0 1 2 0.059 0.52 -2065 RALBP1 ralA binding protein 1 433944 6 6 6 0 2 0 3 0 1 0 0.059 0.52 -2066 BMPR1A bone morphogenetic protein receptor, type IA 368032 4 4 4 0 0 0 2 0 2 0 0.059 0.52 -2067 PPAT phosphoribosyl pyrophosphate amidotransferase 357952 6 5 6 0 2 1 2 1 0 0 0.059 0.52 -2068 MEMO1 mediator of cell motility 1 193760 5 4 5 1 1 2 2 0 0 0 0.059 0.52 -2069 OSBPL11 oxysterol binding protein-like 11 514304 7 6 7 1 2 0 3 0 2 0 0.059 0.52 -2070 PGM5 phosphoglucomutase 5 332052 5 5 5 0 1 1 2 0 1 0 0.060 0.52 -2071 CCDC80 coiled-coil domain containing 80 645344 11 9 11 2 5 3 2 0 1 0 0.060 0.52 -2072 TSPAN18 tetraspanin 18 173600 4 4 4 2 0 1 2 0 1 0 0.060 0.52 -2073 UBA5 ubiquitin-like modifier activating enzyme 5 257480 3 3 3 0 1 1 1 0 0 0 0.060 0.52 -2074 C16orf45 chromosome 16 open reading frame 45 143136 3 3 1 1 0 3 0 0 0 0 0.060 0.52 -2075 HNRNPL heterogeneous nuclear ribonucleoprotein L 321944 6 6 6 3 3 1 2 0 0 0 0.060 0.52 -2076 NAE1 NEDD8 activating enzyme E1 subunit 1 376488 4 4 4 0 0 1 1 0 2 0 0.060 0.52 -2077 CYP4F22 cytochrome P450, family 4, subfamily F, polypeptide 22 360572 7 7 7 2 4 1 0 0 2 0 0.060 0.52 -2078 RBM42 RNA binding motif protein 42 281796 6 6 6 1 4 1 0 0 1 0 0.060 0.52 -2079 TKTL2 transketolase-like 2 420140 7 7 7 2 3 3 1 0 0 0 0.060 0.52 -2080 RASA1 RAS p21 protein activator (GTPase activating protein) 1 704092 9 6 9 2 1 2 3 0 3 0 0.060 0.52 -2081 C6orf89 chromosome 6 open reading frame 89 244384 5 4 5 0 2 0 1 0 2 0 0.060 0.52 -2082 ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) 583184 7 6 7 0 1 2 3 0 1 0 0.060 0.52 -2083 DCTPP1 117600 3 3 3 0 1 2 0 0 0 0 0.060 0.52 -2084 DGKB diacylglycerol kinase, beta 90kDa 548224 9 6 9 2 1 4 2 0 2 0 0.060 0.52 -2085 DNAJB8 DnaJ (Hsp40) homolog, subfamily B, member 8 157472 5 5 5 1 3 2 0 0 0 0 0.060 0.52 -2086 EIF2C4 eukaryotic translation initiation factor 2C, 4 590240 7 6 6 2 0 2 3 0 2 0 0.060 0.52 -2087 EYA1 eyes absent homolog 1 (Drosophila) 419328 5 5 5 3 2 1 2 0 0 0 0.060 0.52 -2088 PLEKHO2 pleckstrin homology domain containing, family O member 2 331200 5 5 5 0 2 2 1 0 0 0 0.060 0.52 -2089 LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 458992 5 5 5 0 0 1 2 0 2 0 0.060 0.52 -2090 ZNF285 398580 5 5 5 2 2 2 1 0 0 0 0.060 0.52 -2091 CCNC cyclin C 196160 3 3 3 0 0 1 2 0 0 0 0.060 0.52 -2092 NLRP1 NLR family, pyrin domain containing 1 990600 12 11 12 5 4 6 2 0 0 0 0.061 0.52 -2093 OR4C15 olfactory receptor, family 4, subfamily C, member 15 250208 5 4 5 2 0 4 1 0 0 0 0.061 0.52 -2094 MPP6 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 373408 6 5 6 1 0 2 3 0 1 0 0.061 0.52 -2095 CETN1 centrin, EF-hand protein, 1 110460 4 3 4 2 2 2 0 0 0 0 0.061 0.52 -2096 ATP8B4 ATPase, class I, type 8B, member 4 825888 12 10 12 1 1 8 3 0 0 0 0.061 0.52 -2097 TGM5 transglutaminase 5 496160 9 7 9 2 3 2 2 2 0 0 0.061 0.52 -2098 CALCR calcitonin receptor 343840 5 5 5 3 2 2 0 0 1 0 0.061 0.52 -2099 C2orf15 chromosome 2 open reading frame 15 86464 2 2 2 0 0 2 0 0 0 0 0.061 0.52 -2100 BRP44 brain protein 44 80212 2 2 2 0 0 2 0 0 0 0 0.061 0.52 -2101 ZIC4 Zic family member 4 216580 8 7 7 0 5 2 0 0 1 0 0.061 0.52 -2102 LAMA1 laminin, alpha 1 2115120 24 18 24 20 6 11 5 0 2 0 0.061 0.52 -2103 NAV3 neuron navigator 3 1623552 23 13 23 9 6 10 3 0 4 0 0.061 0.52 -2104 SLC13A1 solute carrier family 13 (sodium/sulfate symporters), member 1 413952 8 5 8 2 0 3 3 0 2 0 0.061 0.52 -2105 RHOT1 ras homolog gene family, member T1 474656 4 4 4 2 0 0 0 0 4 0 0.061 0.52 -2106 ZDHHC21 zinc finger, DHHC-type containing 21 185024 4 3 4 0 1 1 2 0 0 0 0.061 0.52 -2107 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) 305564 7 5 7 0 3 1 2 0 1 0 0.061 0.52 -2108 ATP6AP1L 154784 2 2 2 2 0 1 0 0 1 0 0.061 0.52 -2109 PLCH1 phospholipase C, eta 1 1133888 17 13 17 3 4 8 5 0 0 0 0.061 0.52 -2110 TAAR6 trace amine associated receptor 6 233408 5 4 5 2 0 5 0 0 0 0 0.061 0.52 -2111 TTK TTK protein kinase 595392 10 6 10 0 3 4 2 0 1 0 0.061 0.52 -2112 ING5 inhibitor of growth family, member 5 71808 1 1 1 0 0 0 0 0 1 0 0.061 0.52 -2113 TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 373268 6 4 5 5 0 0 1 0 3 2 0.061 0.52 -2114 PSME3 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 189952 2 2 2 1 0 1 0 0 1 0 0.061 0.52 -2115 SAA1 serum amyloid A1 85344 3 3 3 0 0 2 1 0 0 0 0.061 0.52 -2116 OR4M1 olfactory receptor, family 4, subfamily M, member 1 211904 3 3 3 1 1 1 1 0 0 0 0.061 0.52 -2117 FAM190A 461344 6 6 6 2 2 3 0 0 1 0 0.061 0.52 -2118 CAND1 cullin-associated and neddylation-dissociated 1 840672 9 8 9 1 1 3 5 0 0 0 0.062 0.52 -2119 THNSL1 threonine synthase-like 1 (S. cerevisiae) 500864 7 6 7 0 0 5 2 0 0 0 0.062 0.52 -2120 ILDR1 immunoglobulin-like domain containing receptor 1 344288 8 6 8 3 2 4 1 0 1 0 0.062 0.52 -2121 ATRN attractin 894208 13 11 13 3 5 5 2 0 1 0 0.062 0.52 -2122 ZNF518A zinc finger protein 518A 994332 8 8 8 1 2 4 1 0 1 0 0.062 0.52 -2123 PKD2L1 polycystic kidney disease 2-like 1 555968 7 7 7 3 3 2 1 0 1 0 0.062 0.52 -2124 SPCS2 signal peptidase complex subunit 2 homolog (S. cerevisiae) 83440 1 1 1 0 0 0 0 0 1 0 0.062 0.52 -2125 KCNG1 potassium voltage-gated channel, subfamily G, member 1 303604 5 5 5 2 3 0 1 0 1 0 0.062 0.52 -2126 GAP43 growth associated protein 43 162792 3 3 3 0 1 0 1 0 1 0 0.062 0.52 -2127 CES1 carboxylesterase 1 (monocyte/macrophage serine esterase 1) 296296 5 5 5 1 1 3 1 0 0 0 0.062 0.52 -2128 SPRR3 small proline-rich protein 3 115136 2 2 2 0 0 2 0 0 0 0 0.062 0.52 -2129 C1S complement component 1, s subcomponent 472864 6 6 6 2 2 1 1 0 2 0 0.062 0.52 -2130 KRT85 keratin 85 348180 6 6 6 1 2 4 0 0 0 0 0.062 0.52 -2131 MLX MAX-like protein X 161504 4 4 4 0 2 1 1 0 0 0 0.062 0.52 -2132 ZNF791 zinc finger protein 791 391328 5 5 5 0 0 2 2 0 1 0 0.062 0.52 -2133 ZNF330 zinc finger protein 330 223776 3 3 3 1 0 1 1 0 1 0 0.062 0.52 -2134 ZNF10 zinc finger protein 10 389312 4 4 4 1 0 3 0 0 1 0 0.062 0.52 -2135 DYDC2 DPY30 domain containing 2 122304 2 2 2 1 1 1 0 0 0 0 0.062 0.52 -2136 FTO fat mass and obesity associated 341432 5 5 5 2 2 2 1 0 0 0 0.062 0.52 -2137 ANGPT2 angiopoietin 2 342048 5 5 5 0 2 0 3 0 0 0 0.062 0.52 -2138 GRB14 growth factor receptor-bound protein 14 344456 6 5 6 0 2 1 1 0 2 0 0.062 0.52 -2139 NAP1L2 nucleosome assembly protein 1-like 2 310688 5 5 5 1 0 3 1 0 1 0 0.062 0.52 -2140 CLEC7A C-type lectin domain family 7, member A 180096 3 3 3 0 0 0 3 0 0 0 0.062 0.52 -2141 TLE4 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 537964 7 7 7 3 2 1 1 1 2 0 0.062 0.52 -2142 CCDC148 coiled-coil domain containing 148 410368 5 5 5 1 1 1 2 0 1 0 0.062 0.53 -2143 ZNF222 zinc finger protein 222 306432 5 4 5 2 0 3 0 0 2 0 0.062 0.53 -2144 XIRP1 xin actin-binding repeat containing 1 1234688 13 12 13 1 7 1 3 0 2 0 0.062 0.53 -2145 MLH1 mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) 525728 8 6 8 1 2 2 2 0 2 0 0.062 0.53 -2146 C13orf27 chromosome 13 open reading frame 27 157696 3 3 3 0 1 0 1 0 1 0 0.063 0.53 -2147 KRTAP4-3 keratin associated protein 4-3 132608 3 3 3 1 2 0 1 0 0 0 0.063 0.53 -2148 GPR141 G protein-coupled receptor 141 206528 3 3 3 1 0 0 2 0 1 0 0.063 0.53 -2149 ZMYND19 zinc finger, MYND-type containing 19 144256 2 2 1 0 0 0 0 0 2 0 0.063 0.53 -2150 ATP6V1G3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 93856 2 2 2 0 0 1 1 0 0 0 0.063 0.53 -2151 TSKS 379876 6 6 6 5 0 3 1 2 0 0 0.063 0.53 -2152 SMC2 structural maintenance of chromosomes 2 826560 7 6 7 1 0 4 0 0 3 0 0.063 0.53 -2153 TMED10 transmembrane emp24-like trafficking protein 10 (yeast) 152320 5 3 5 0 0 3 0 0 0 2 0.063 0.53 -2154 RTP1 receptor (chemosensory) transporter protein 1 179200 5 5 5 0 2 2 1 0 0 0 0.063 0.53 -2155 SCN3A sodium channel, voltage-gated, type III, alpha subunit 1389472 16 12 16 3 6 4 3 0 3 0 0.063 0.53 -2156 MUC13 mucin 13, cell surface associated 353920 5 5 5 1 4 0 1 0 0 0 0.063 0.53 -2157 TRIM6 tripartite motif-containing 6 354592 6 6 6 0 1 4 0 0 1 0 0.063 0.53 -2158 A2M alpha-2-macroglobulin 1007952 11 9 10 5 3 4 1 0 3 0 0.063 0.53 -2159 S100A2 S100 calcium binding protein A2 67648 2 2 2 0 0 1 1 0 0 0 0.063 0.53 -2160 ADRA1B adrenergic, alpha-1B-, receptor 232484 5 5 5 1 3 1 0 0 1 0 0.064 0.53 -2161 HRC histidine rich calcium binding protein 475640 6 6 6 4 1 4 1 0 0 0 0.064 0.53 -2162 AICDA activation-induced cytidine deaminase 138208 4 4 4 1 2 2 0 0 0 0 0.064 0.53 -2163 MON2 MON2 homolog (S. cerevisiae) 1185856 13 10 13 2 1 8 2 0 2 0 0.064 0.53 -2164 CXorf65 129024 2 2 2 0 1 0 0 0 1 0 0.064 0.53 -2165 UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7 361536 6 5 6 0 0 3 3 0 0 0 0.064 0.53 -2166 TRIM37 tripartite motif-containing 37 671776 9 8 9 1 4 3 0 0 2 0 0.064 0.53 -2167 RORB RAR-related orphan receptor B 315980 6 6 6 5 1 3 2 0 0 0 0.064 0.53 -2168 NTRK1 neurotrophic tyrosine kinase, receptor, type 1 504824 7 6 6 2 1 2 3 0 1 0 0.064 0.53 -2169 MC2R melanocortin 2 receptor (adrenocorticotropic hormone) 201152 5 4 5 5 2 0 3 0 0 0 0.064 0.53 -2170 LRRTM4 leucine rich repeat transmembrane neuronal 4 401184 6 6 6 3 3 2 0 0 1 0 0.064 0.53 -2171 C17orf97 206276 5 5 5 0 5 0 0 0 0 0 0.064 0.53 -2172 SNX13 sorting nexin 13 643816 9 7 9 1 4 1 2 0 2 0 0.064 0.53 -2173 LDHAL6A lactate dehydrogenase A-like 6A 230048 3 3 3 0 0 1 1 0 1 0 0.064 0.53 -2174 PYGO1 pygopus homolog 1 (Drosophila) 284928 5 4 5 1 1 1 3 0 0 0 0.064 0.53 -2175 GMPS guanine monphosphate synthetase 466960 5 5 5 0 0 2 1 0 2 0 0.064 0.53 -2176 SYPL2 synaptophysin-like 2 158144 3 3 3 0 1 1 0 0 1 0 0.064 0.53 -2177 PRL prolactin 155792 3 3 3 2 0 2 0 0 1 0 0.064 0.53 -2178 PPP1R3C protein phosphatase 1, regulatory (inhibitor) subunit 3C 215488 4 4 4 1 0 1 2 0 1 0 0.064 0.53 -2179 SLC26A5 solute carrier family 26, member 5 (prestin) 525952 7 6 7 2 2 2 1 0 2 0 0.064 0.53 -2180 NAA11 155456 4 4 4 0 1 3 0 0 0 0 0.064 0.53 -2181 C15orf40 chromosome 15 open reading frame 40 113120 2 2 2 1 1 0 1 0 0 0 0.064 0.53 -2182 SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter family), member 2 239904 4 4 4 2 1 2 1 0 0 0 0.064 0.53 -2183 PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1 269724 5 5 5 1 1 2 1 0 1 0 0.064 0.53 -2184 PNLDC1 poly(A)-specific ribonuclease (PARN)-like domain containing 1 366240 9 6 9 2 5 3 0 0 1 0 0.064 0.53 -2185 HTR1A 5-hydroxytryptamine (serotonin) receptor 1A 285152 5 5 5 7 1 3 0 1 0 0 0.064 0.53 -2186 SLC13A3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 394800 6 6 6 3 3 2 1 0 0 0 0.064 0.53 -2187 PTER phosphotriesterase related 238784 5 5 5 1 2 2 1 0 0 0 0.064 0.53 -2188 C2orf34 chromosome 2 open reading frame 34 195776 4 4 4 0 2 2 0 0 0 0 0.064 0.53 -2189 SETDB1 SET domain, bifurcated 1 887040 8 8 8 1 5 0 1 0 2 0 0.064 0.53 -2190 KCNA2 potassium voltage-gated channel, shaker-related subfamily, member 2 336896 5 5 5 1 2 3 0 0 0 0 0.064 0.53 -2191 FANCM Fanconi anemia, complementation group M 1395604 16 12 16 2 2 5 6 0 3 0 0.065 0.53 -2192 TMEM185A transmembrane protein 185A 161784 3 2 3 0 0 1 0 0 0 2 0.065 0.53 -2193 ATG5 ATG5 autophagy related 5 homolog (S. cerevisiae) 191744 4 3 4 0 0 3 0 0 1 0 0.065 0.53 -2194 REG1B regenerating islet-derived 1 beta (pancreatic stone protein, pancreatic thread protein) 116704 2 2 2 0 0 2 0 0 0 0 0.065 0.53 -2195 SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 269024 5 5 5 6 1 3 1 0 0 0 0.065 0.53 -2196 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 383488 5 5 5 0 1 2 1 0 1 0 0.065 0.53 -2197 MRC2 mannose receptor, C type 2 901068 10 10 10 1 5 3 0 1 1 0 0.065 0.53 -2198 PCCB propionyl Coenzyme A carboxylase, beta polypeptide 350488 4 4 4 0 2 1 0 0 1 0 0.065 0.53 -2199 TRPV5 transient receptor potential cation channel, subfamily V, member 5 504000 13 7 12 3 7 3 0 2 1 0 0.065 0.53 -2200 TBC1D22A TBC1 domain family, member 22A 324012 7 7 7 3 4 2 1 0 0 0 0.065 0.53 -2201 OR6F1 olfactory receptor, family 6, subfamily F, member 1 208544 3 3 3 2 0 1 1 0 1 0 0.065 0.53 -2202 C19orf76 51968 1 1 1 0 0 0 0 0 1 0 0.065 0.53 -2203 OR6Y1 olfactory receptor, family 6, subfamily Y, member 1 218456 4 4 4 1 1 3 0 0 0 0 0.065 0.53 -2204 CD226 CD226 molecule 231840 4 4 4 1 2 1 0 0 1 0 0.065 0.53 -2205 KIAA0319 KIAA0319 738976 8 8 8 3 3 4 0 0 1 0 0.065 0.53 -2206 SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 330372 5 5 5 0 1 0 3 0 1 0 0.065 0.53 -2207 OR5H2 olfactory receptor, family 5, subfamily H, member 2 212576 5 4 5 0 2 2 1 0 0 0 0.065 0.53 -2208 ZNF676 zinc finger protein 676 398496 8 5 8 1 1 2 3 0 2 0 0.065 0.53 -2209 CPS1 carbamoyl-phosphate synthetase 1, mitochondrial 1047648 14 10 14 3 1 7 2 0 4 0 0.065 0.53 -2210 ZBTB26 zinc finger and BTB domain containing 26 297920 3 3 3 1 1 1 0 0 1 0 0.065 0.53 -2211 CEP55 centrosomal protein 55kDa 319648 4 4 4 1 0 1 2 0 1 0 0.065 0.53 -2212 MTG1 mitochondrial GTPase 1 homolog (S. cerevisiae) 204360 3 3 3 3 1 1 1 0 0 0 0.066 0.54 -2213 BBS1 Bardet-Biedl syndrome 1 413720 4 4 4 1 0 2 0 0 2 0 0.066 0.54 -2214 ERC2 ELKS/RAB6-interacting/CAST family member 2 655872 10 9 10 1 6 2 0 0 2 0 0.066 0.54 -2215 DVL2 dishevelled, dsh homolog 2 (Drosophila) 496692 9 8 8 2 4 2 1 0 2 0 0.066 0.54 -2216 HNMT histamine N-methyltransferase 251104 4 4 4 0 2 2 0 0 0 0 0.066 0.54 -2217 GCOM1 387744 7 6 7 2 4 2 1 0 0 0 0.066 0.54 -2218 PIPOX pipecolic acid oxidase 269920 4 4 4 0 0 2 0 0 2 0 0.066 0.54 -2219 DEFB135 54208 2 2 2 0 0 1 1 0 0 0 0.066 0.54 -2220 KCNJ3 potassium inwardly-rectifying channel, subfamily J, member 3 339528 6 5 6 3 0 2 3 0 1 0 0.066 0.54 -2221 OR2K2 olfactory receptor, family 2, subfamily K, member 2 213920 5 4 4 0 1 4 0 0 0 0 0.066 0.54 -2222 ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 821184 6 6 6 2 0 0 1 1 4 0 0.066 0.54 -2223 TTC30A tetratricopeptide repeat domain 30A 434756 6 6 6 2 1 3 1 0 1 0 0.066 0.54 -2224 NPVF neuropeptide VF precursor 135072 2 2 2 1 0 0 1 0 1 0 0.066 0.54 -2225 ATRX alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) 719264 8 5 8 3 2 5 1 0 0 0 0.066 0.54 -2226 SDPR serum deprivation response (phosphatidylserine binding protein) 288064 4 4 4 2 1 2 0 0 1 0 0.066 0.54 -2227 PRR16 proline rich 16 170240 3 3 3 2 1 2 0 0 0 0 0.066 0.54 -2228 WDR49 WD repeat domain 49 481600 5 5 5 2 0 4 0 0 1 0 0.066 0.54 -2229 FADS2 fatty acid desaturase 2 300736 4 4 4 0 3 0 1 0 0 0 0.066 0.54 -2230 ESCO1 establishment of cohesion 1 homolog 1 (S. cerevisiae) 573048 11 7 10 0 4 3 3 0 1 0 0.067 0.54 -2231 CSF3R colony stimulating factor 3 receptor (granulocyte) 617876 10 8 10 0 6 2 1 0 1 0 0.067 0.54 -2232 SLFN13 schlafen family member 13 598136 7 6 7 4 1 3 2 0 1 0 0.067 0.54 -2233 RUNDC3B RUN domain containing 3B 315568 7 5 7 0 2 1 2 0 2 0 0.067 0.54 -2234 PCDHAC1 protocadherin alpha subfamily C, 1 653548 10 9 10 5 5 3 1 0 1 0 0.067 0.54 -2235 GPR113 G protein-coupled receptor 113 595900 5 5 5 2 1 1 0 0 3 0 0.067 0.54 -2236 CIB3 calcium and integrin binding family member 3 131712 3 3 3 0 2 0 0 1 0 0 0.067 0.54 -2237 ACCN1 amiloride-sensitive cation channel 1, neuronal (degenerin) 436240 7 6 7 1 4 1 1 0 1 0 0.067 0.54 -2238 ZNF322B zinc finger protein 322B 204512 3 3 3 0 0 1 1 0 1 0 0.067 0.54 -2239 PSD2 pleckstrin and Sec7 domain containing 2 531328 8 8 8 2 5 2 0 0 1 0 0.067 0.54 -2240 CLUAP1 clusterin associated protein 1 288960 5 5 5 2 1 2 2 0 0 0 0.067 0.54 -2241 PHACTR3 phosphatase and actin regulator 3 360640 8 6 8 6 4 1 1 0 0 2 0.067 0.54 -2242 SEMA4F sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F 516320 9 9 9 0 5 3 1 0 0 0 0.068 0.54 -2243 KLK2 kallikrein-related peptidase 2 188832 3 3 1 1 0 3 0 0 0 0 0.068 0.54 -2244 ZMYM4 zinc finger, MYM-type 4 1058176 11 8 10 0 2 3 2 0 4 0 0.068 0.54 -2245 KLHL9 kelch-like 9 (Drosophila) 416192 6 6 6 1 3 1 0 0 2 0 0.068 0.55 -2246 THOC1 THO complex 1 448172 5 4 5 0 2 0 0 0 3 0 0.068 0.55 -2247 SPEF2 sperm flagellar 2 1262912 13 10 13 2 5 4 2 0 2 0 0.068 0.55 -2248 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 101696 2 2 2 0 0 1 0 0 1 0 0.068 0.55 -2249 PDE4D phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) 527456 5 5 5 1 2 1 0 0 2 0 0.068 0.55 -2250 TULP3 tubby like protein 3 307552 5 4 5 0 1 1 2 0 1 0 0.068 0.55 -2251 RBBP7 retinoblastoma binding protein 7 292544 7 6 5 0 7 0 0 0 0 0 0.069 0.55 -2252 GOT1 glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) 286272 6 5 5 0 2 1 1 0 2 0 0.069 0.55 -2253 EIF2C1 eukaryotic translation initiation factor 2C, 1 593600 10 10 9 1 6 1 2 1 0 0 0.069 0.55 -2254 OR1L8 olfactory receptor, family 1, subfamily L, member 8 209216 4 4 4 1 1 0 3 0 0 0 0.069 0.55 -2255 NTN4 netrin 4 418432 6 6 4 1 4 0 1 0 1 0 0.069 0.55 -2256 MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae) 145012 2 2 2 0 0 0 1 0 1 0 0.069 0.55 -2257 EFCAB1 EF-hand calcium binding domain 1 147840 3 3 3 0 0 3 0 0 0 0 0.069 0.55 -2258 MRPL44 mitochondrial ribosomal protein L44 226016 5 5 5 0 1 2 2 0 0 0 0.069 0.55 -2259 CREG2 cellular repressor of E1A-stimulated genes 2 106496 2 2 2 1 0 1 1 0 0 0 0.069 0.55 -2260 SLC35A1 solute carrier family 35 (CMP-sialic acid transporter), member A1 229824 3 3 3 0 0 2 1 0 0 0 0.069 0.55 -2261 CLSTN2 calsyntenin 2 630992 8 8 8 4 4 2 2 0 0 0 0.069 0.55 -2262 ADAR adenosine deaminase, RNA-specific 837060 8 8 8 2 1 3 2 1 1 0 0.069 0.55 -2263 TSHR thyroid stimulating hormone receptor 553728 7 7 7 3 2 3 2 0 0 0 0.069 0.55 -2264 TTPAL 234080 3 3 3 1 1 1 0 0 1 0 0.069 0.55 -2265 SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 1192800 13 11 12 2 6 2 2 0 3 0 0.069 0.55 -2266 RNPEP arginyl aminopeptidase (aminopeptidase B) 354004 4 4 4 1 0 1 1 0 2 0 0.069 0.55 -2267 ATG4C ATG4 autophagy related 4 homolog C (S. cerevisiae) 317408 5 4 5 1 0 2 2 0 1 0 0.069 0.55 -2268 NHEJ1 nonhomologous end-joining factor 1 207872 3 3 3 0 0 0 2 0 1 0 0.069 0.55 -2269 PLD5 phospholipase D family, member 5 307104 5 5 5 3 1 2 2 0 0 0 0.069 0.55 -2270 GORASP1 golgi reassembly stacking protein 1, 65kDa 291928 4 4 4 2 1 0 2 0 1 0 0.069 0.55 -2271 GYPB glycophorin B (MNS blood group) 64944 2 2 2 0 0 1 1 0 0 0 0.069 0.55 -2272 TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 271824 5 5 5 0 1 2 2 0 0 0 0.070 0.55 -2273 KLRK1 killer cell lectin-like receptor subfamily K, member 1 152096 3 3 3 0 0 1 2 0 0 0 0.070 0.55 -2274 ZNF501 zinc finger protein 501 183680 4 4 4 0 1 3 0 0 0 0 0.070 0.55 -2275 PCNA proliferating cell nuclear antigen 177744 3 3 3 1 0 2 1 0 0 0 0.070 0.55 -2276 ZNF624 zinc finger protein 624 586432 6 6 6 1 0 1 3 0 2 0 0.070 0.55 -2277 GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type 295904 4 4 4 0 0 2 0 0 2 0 0.070 0.55 -2278 PARP11 poly (ADP-ribose) polymerase family, member 11 230048 5 4 5 1 3 1 1 0 0 0 0.070 0.55 -2279 THEMIS 436380 9 6 9 0 4 2 1 0 2 0 0.070 0.55 -2280 DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 554400 6 6 5 6 3 0 1 0 2 0 0.070 0.55 -2281 CPA5 carboxypeptidase A5 303520 6 5 6 0 2 3 1 0 0 0 0.070 0.55 -2282 TTLL9 tubulin tyrosine ligase-like family, member 9 308224 7 6 7 1 3 4 0 0 0 0 0.070 0.55 -2283 NEK4 NIMA (never in mitosis gene a)-related kinase 4 535160 8 8 8 0 2 4 2 0 0 0 0.070 0.55 -2284 TLR3 toll-like receptor 3 611744 6 5 6 1 1 1 1 0 1 2 0.070 0.55 -2285 GSTA3 glutathione S-transferase A3 155232 4 3 4 0 0 1 2 0 1 0 0.071 0.56 -2286 ELF5 E74-like factor 5 (ets domain transcription factor) 185024 4 4 4 0 2 2 0 0 0 0 0.071 0.56 -2287 ZNF254 zinc finger protein 254 447104 4 4 4 2 0 1 2 0 1 0 0.071 0.56 -2288 MS4A7 membrane-spanning 4-domains, subfamily A, member 7 167328 3 3 3 0 2 0 1 0 0 0 0.071 0.56 -2289 C5 complement component 5 1162864 13 9 13 1 3 5 4 0 1 0 0.071 0.56 -2290 OR2A14 olfactory receptor, family 2, subfamily A, member 14 209888 3 3 3 1 1 1 0 0 1 0 0.071 0.56 -2291 ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 403928 5 5 5 2 0 4 1 0 0 0 0.071 0.56 -2292 SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 393400 4 4 4 1 0 2 1 0 1 0 0.071 0.56 -2293 ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 855596 11 11 11 8 7 0 2 0 2 0 0.071 0.56 -2294 MUM1L1 melanoma associated antigen (mutated) 1-like 1 421496 6 5 6 0 1 3 2 0 0 0 0.071 0.56 -2295 PXDN peroxidasin homolog (Drosophila) 932628 15 12 14 9 9 3 0 0 3 0 0.071 0.56 -2296 GPR12 G protein-coupled receptor 12 226016 5 5 5 1 2 3 0 0 0 0 0.071 0.56 -2297 PRR21 168968 3 3 1 1 0 3 0 0 0 0 0.071 0.56 -2298 GJB3 gap junction protein, beta 3, 31kDa 183008 4 4 4 0 2 1 1 0 0 0 0.071 0.56 -2299 MPP4 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 431504 8 6 8 1 3 3 1 0 1 0 0.071 0.56 -2300 ZHX3 zinc fingers and homeoboxes 3 644896 8 7 8 0 4 0 2 0 2 0 0.071 0.56 -2301 PRKRA protein kinase, interferon-inducible double stranded RNA dependent activator 218708 4 4 3 0 0 3 0 0 1 0 0.072 0.56 -2302 DNAH8 dynein, axonemal, heavy chain 8 3097696 33 19 33 10 9 8 10 1 5 0 0.072 0.56 -2303 CPA1 carboxypeptidase A1 (pancreatic) 291200 4 4 4 1 0 1 2 0 1 0 0.072 0.56 -2304 PSG3 pregnancy specific beta-1-glycoprotein 3 293664 5 5 5 0 2 1 1 0 1 0 0.072 0.56 -2305 CRB1 crumbs homolog 1 (Drosophila) 956256 10 8 10 10 3 5 2 0 0 0 0.072 0.56 -2306 OR9A4 olfactory receptor, family 9, subfamily A, member 4 212576 5 4 5 4 1 2 2 0 0 0 0.072 0.56 -2307 SNX19 sorting nexin 19 677152 10 7 10 0 1 2 3 1 3 0 0.072 0.56 -2308 MAPK8 mitogen-activated protein kinase 8 315616 7 5 7 0 1 2 3 1 0 0 0.072 0.56 -2309 KCNC2 potassium voltage-gated channel, Shaw-related subfamily, member 2 410592 8 6 8 2 3 3 0 1 1 0 0.072 0.56 -2310 KIAA1432 KIAA1432 928480 7 7 6 0 2 1 2 0 2 0 0.072 0.56 -2311 SPATS2 spermatogenesis associated, serine-rich 2 377664 5 5 5 2 2 1 2 0 0 0 0.072 0.56 -2312 NRN1L neuritin 1-like 106724 2 2 2 0 1 0 0 0 1 0 0.072 0.56 -2313 ZNF599 zinc finger protein 599 394464 9 6 9 1 2 3 3 1 0 0 0.072 0.56 -2314 PHF17 PHD finger protein 17 577696 8 7 8 3 1 6 0 1 0 0 0.072 0.56 -2315 FCRL3 Fc receptor-like 3 506464 9 6 9 4 2 4 2 0 1 0 0.072 0.56 -2316 VPS52 vacuolar protein sorting 52 homolog (S. cerevisiae) 400876 6 5 6 1 2 0 2 0 2 0 0.072 0.56 -2317 PRPF18 PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) 239456 4 4 4 2 0 1 3 0 0 0 0.072 0.56 -2318 RRAD Ras-related associated with diabetes 150276 3 3 3 1 1 1 1 0 0 0 0.072 0.56 -2319 CPE carboxypeptidase E 284984 7 6 7 2 4 1 2 0 0 0 0.072 0.56 -2320 ENY2 enhancer of yellow 2 homolog (Drosophila) 73024 1 1 1 0 0 0 0 0 1 0 0.072 0.56 -2321 C20orf185 chromosome 20 open reading frame 185 327592 5 5 5 2 3 0 2 0 0 0 0.073 0.56 -2322 P2RY1 purinergic receptor P2Y, G-protein coupled, 1 241304 6 5 6 1 1 3 1 0 1 0 0.073 0.56 -2323 NIPSNAP1 nipsnap homolog 1 (C. elegans) 168248 2 2 2 0 1 0 0 0 1 0 0.073 0.56 -2324 MKRN1 makorin, ring finger protein, 1 292944 4 4 4 0 1 0 1 0 2 0 0.073 0.56 -2325 C6orf203 chromosome 6 open reading frame 203 166880 3 3 3 1 1 1 0 0 1 0 0.073 0.56 -2326 PCDHGB2 protocadherin gamma subfamily B, 2 599060 7 7 7 1 3 2 1 0 1 0 0.073 0.56 -2327 CCDC41 coiled-coil domain containing 41 485184 7 4 6 1 1 0 2 0 2 2 0.073 0.56 -2328 PKD2L2 polycystic kidney disease 2-like 2 425152 6 5 6 0 2 1 1 0 2 0 0.073 0.56 -2329 RBM43 RNA binding motif protein 43 244160 3 3 3 0 0 3 0 0 0 0 0.073 0.56 -2330 FIP1L1 FIP1 like 1 (S. cerevisiae) 422912 6 6 6 0 3 1 1 0 1 0 0.073 0.56 -2331 SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 838880 11 8 11 1 3 3 3 0 2 0 0.073 0.56 -2332 WDR36 WD repeat domain 36 660352 8 7 8 3 0 6 1 0 1 0 0.073 0.56 -2333 BCAS2 breast carcinoma amplified sequence 2 158144 2 2 2 0 0 1 0 0 1 0 0.073 0.57 -2334 AFM afamin 415744 7 5 7 1 1 2 3 0 1 0 0.073 0.57 -2335 TIAM2 T-cell lymphoma invasion and metastasis 2 1163736 16 13 16 4 4 5 5 0 2 0 0.073 0.57 -2336 IRX3 iroquois homeobox 3 172300 4 4 4 2 1 1 0 0 2 0 0.073 0.57 -2337 BHMT betaine-homocysteine methyltransferase 280672 5 4 5 2 1 2 0 0 2 0 0.073 0.57 -2338 OR2F1 olfactory receptor, family 2, subfamily F, member 1 214592 4 3 4 2 0 3 1 0 0 0 0.073 0.57 -2339 RYR3 ryanodine receptor 3 3313504 42 22 41 11 15 15 9 0 3 0 0.073 0.57 -2340 ZNF18 zinc finger protein 18 367584 6 6 6 0 0 6 0 0 0 0 0.073 0.57 -2341 HAVCR2 hepatitis A virus cellular receptor 2 209216 3 3 3 1 0 0 2 0 1 0 0.073 0.57 -2342 OR5B17 olfactory receptor, family 5, subfamily B, member 17 212576 5 4 4 0 3 1 1 0 0 0 0.073 0.57 -2343 ZNF607 zinc finger protein 607 471968 10 6 10 1 1 5 4 0 0 0 0.074 0.57 -2344 NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 353024 5 5 5 3 1 2 1 0 1 0 0.074 0.57 -2345 DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2 506680 7 5 7 1 1 3 1 0 2 0 0.074 0.57 -2346 IQCE IQ motif containing E 474852 5 5 5 0 2 0 0 0 3 0 0.074 0.57 -2347 CER1 cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis) 181888 3 3 3 0 1 2 0 0 0 0 0.074 0.57 -2348 GPR1 G protein-coupled receptor 1 240128 4 4 4 1 0 4 0 0 0 0 0.074 0.57 -2349 SLC2A10 solute carrier family 2 (facilitated glucose transporter), member 10 366912 5 5 5 4 1 2 2 0 0 0 0.074 0.57 -2350 SNRNP27 110208 2 2 2 1 0 1 0 0 1 0 0.074 0.57 -2351 C3orf39 chromosome 3 open reading frame 39 386960 8 7 7 1 6 1 1 0 0 0 0.074 0.57 -2352 CD72 CD72 molecule 238752 4 4 4 1 1 2 0 0 1 0 0.074 0.57 -2353 CORO2A coronin, actin binding protein, 2A 361016 6 5 5 3 0 3 3 0 0 0 0.074 0.57 -2354 MTOR 1764536 16 16 16 3 7 5 2 0 2 0 0.074 0.57 -2355 RNGTT RNA guanylyltransferase and 5'-phosphatase 416192 6 5 6 1 2 2 1 0 1 0 0.074 0.57 -2356 RASSF2 Ras association (RalGDS/AF-6) domain family member 2 228704 5 5 5 2 3 0 2 0 0 0 0.074 0.57 -2357 TXK TXK tyrosine kinase 368256 5 5 5 0 2 0 2 0 1 0 0.074 0.57 -2358 GLRA3 glycine receptor, alpha 3 321440 8 5 6 4 2 5 0 1 0 0 0.074 0.57 -2359 MAP2K1 mitogen-activated protein kinase kinase 1 263200 4 4 4 0 2 0 2 0 0 0 0.074 0.57 -2360 PCLO piccolo (presynaptic cytomatrix protein) 3447184 42 20 41 10 6 16 14 1 2 3 0.074 0.57 -2361 MNDA myeloid cell nuclear differentiation antigen 279552 6 5 6 3 0 2 4 0 0 0 0.074 0.57 -2362 C2orf49 chromosome 2 open reading frame 49 160076 3 3 3 0 0 1 1 0 1 0 0.074 0.57 -2363 POGZ pogo transposable element with ZNF domain 966560 9 8 9 1 3 2 0 0 4 0 0.074 0.57 -2364 DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 1070496 11 10 11 4 4 4 0 1 2 0 0.074 0.57 -2365 STXBP1 syntaxin binding protein 1 430524 6 6 6 0 2 2 1 1 0 0 0.074 0.57 -2366 G6PC3 glucose 6 phosphatase, catalytic, 3 233664 3 3 3 2 1 0 0 0 2 0 0.074 0.57 -2367 OR4S2 olfactory receptor, family 4, subfamily S, member 2 210560 3 3 3 1 1 0 2 0 0 0 0.074 0.57 -2368 SEZ6L seizure related 6 homolog (mouse)-like 678336 10 9 9 7 6 2 1 1 0 0 0.074 0.57 -2369 DEFB129 defensin, beta 129 125440 2 2 2 0 0 0 2 0 0 0 0.075 0.57 -2370 VARS2 valyl-tRNA synthetase 2, mitochondrial (putative) 528684 6 6 6 3 4 0 1 0 1 0 0.075 0.57 -2371 PNPLA4 patatin-like phospholipase domain containing 4 176064 3 3 3 0 0 0 2 0 1 0 0.075 0.57 -2372 IQCF1 IQ motif containing F1 142016 3 3 3 1 1 1 0 0 1 0 0.075 0.57 -2373 SLC17A9 289520 5 5 5 1 1 2 2 0 0 0 0.075 0.57 -2374 YME1L1 YME1-like 1 (S. cerevisiae) 524856 6 6 6 0 1 2 2 0 1 0 0.075 0.57 -2375 CCDC27 coiled-coil domain containing 27 428100 7 6 7 1 2 2 1 0 2 0 0.075 0.57 -2376 DIS3 DIS3 mitotic control homolog (S. cerevisiae) 616896 7 7 7 3 3 2 2 0 0 0 0.075 0.57 -2377 DNM1 dynamin 1 517284 11 10 10 6 3 5 2 0 1 0 0.075 0.57 -2378 DENND1A DENN/MADD domain containing 1A 644132 7 7 7 5 2 3 1 0 1 0 0.075 0.57 -2379 CTXN3 cortexin 3 56000 2 2 2 0 1 1 0 0 0 0 0.075 0.57 -2380 PRM1 protamine 1 36736 2 2 2 0 1 1 0 0 0 0 0.075 0.57 -2381 PGLYRP1 peptidoglycan recognition protein 1 135072 3 3 3 0 1 0 1 0 1 0 0.075 0.57 -2382 TMCO5A 202760 3 3 3 0 2 1 0 0 0 0 0.075 0.57 -2383 ARL5A ADP-ribosylation factor-like 5A 126336 2 2 1 0 0 0 0 0 2 0 0.075 0.57 -2384 GPX2 glutathione peroxidase 2 (gastrointestinal) 130144 2 2 2 0 0 1 0 0 1 0 0.075 0.57 -2385 SYCP2 synaptonemal complex protein 2 1067360 12 10 12 1 1 7 4 0 0 0 0.075 0.57 -2386 TCEB3B transcription elongation factor B polypeptide 3B (elongin A2) 492716 9 8 9 5 4 3 2 0 0 0 0.075 0.57 -2387 MOBKL3 MOB1, Mps One Binder kinase activator-like 3 (yeast) 159040 4 4 4 0 1 1 2 0 0 0 0.075 0.57 -2388 XRN2 5'-3' exoribonuclease 2 655208 8 7 8 2 1 2 1 0 4 0 0.075 0.57 -2389 LIX1 Lix1 homolog (chicken) 195552 5 4 5 0 3 0 1 0 1 0 0.076 0.57 -2390 SLC19A2 solute carrier family 19 (thiamine transporter), member 2 301140 3 3 3 0 0 0 1 0 2 0 0.076 0.57 -2391 BTBD1 BTB (POZ) domain containing 1 267904 4 4 4 0 1 2 1 0 0 0 0.076 0.57 -2392 TMEM104 transmembrane protein 104 321384 5 5 5 3 2 2 0 0 1 0 0.076 0.57 -2393 STX2 syntaxin 2 213920 3 3 3 0 1 0 1 0 1 0 0.076 0.57 -2394 S100A7 S100 calcium binding protein A7 70336 2 2 2 0 0 2 0 0 0 0 0.076 0.57 -2395 ARHGAP33 685464 8 8 8 1 4 1 0 0 3 0 0.076 0.57 -2396 PPM1N 156800 5 4 5 1 1 3 0 0 1 0 0.076 0.57 -2397 FUNDC1 FUN14 domain containing 1 104960 2 2 2 0 0 0 2 0 0 0 0.076 0.57 -2398 DPY30 dpy-30 homolog (C. elegans) 70784 2 2 2 0 0 0 2 0 0 0 0.076 0.57 -2399 HNRNPUL1 547848 8 7 8 2 5 1 1 0 1 0 0.076 0.57 -2400 MAP3K12 mitogen-activated protein kinase kinase kinase 12 590464 6 6 6 1 1 1 2 0 2 0 0.076 0.57 -2401 LY96 lymphocyte antigen 96 112672 2 2 2 1 1 0 1 0 0 0 0.076 0.57 -2402 ACADSB acyl-Coenzyme A dehydrogenase, short/branched chain 294312 5 4 5 1 2 1 1 0 1 0 0.076 0.57 -2403 TTC27 tetratricopeptide repeat domain 27 567816 8 6 8 1 2 4 0 0 2 0 0.076 0.57 -2404 SLAMF8 SLAM family member 8 196672 3 3 3 1 1 1 0 0 1 0 0.076 0.57 -2405 OR2T34 olfactory receptor, family 2, subfamily T, member 34 209804 4 4 3 1 1 3 0 0 0 0 0.076 0.57 -2406 NFE2 nuclear factor (erythroid-derived 2), 45kDa 253120 4 4 4 1 1 0 1 0 2 0 0.076 0.57 -2407 RNMT RNA (guanine-7-) methyltransferase 321608 4 4 4 0 1 0 2 0 1 0 0.076 0.57 -2408 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 914676 11 9 11 1 2 3 4 0 2 0 0.076 0.57 -2409 ZNF721 zinc finger protein 721 622720 13 8 13 3 1 6 5 0 1 0 0.076 0.57 -2410 KCNAB1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 400288 7 6 7 1 3 1 1 0 2 0 0.076 0.57 -2411 ACTN2 actinin, alpha 2 620256 8 7 8 7 5 3 0 0 0 0 0.076 0.57 -2412 TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 240800 3 3 3 2 0 0 2 0 1 0 0.077 0.57 -2413 GPX3 glutathione peroxidase 3 (plasma) 153688 3 3 3 0 1 2 0 0 0 0 0.077 0.57 -2414 CLEC1A C-type lectin domain family 1, member A 194208 4 4 4 0 2 2 0 0 0 0 0.077 0.57 -2415 NKX3-1 NK3 homeobox 1 119952 3 3 3 0 2 0 0 0 1 0 0.077 0.57 -2416 TSLP thymic stromal lymphopoietin 111104 3 2 3 0 1 0 1 0 1 0 0.077 0.57 -2417 ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 2016672 24 15 24 5 12 5 3 0 4 0 0.077 0.57 -2418 DIRC1 disrupted in renal carcinoma 1 71456 1 1 1 0 0 1 0 0 0 0 0.077 0.57 -2419 GLYATL2 glycine-N-acyltransferase-like 2 202720 3 3 3 0 0 2 1 0 0 0 0.077 0.57 -2420 NLRP9 NLR family, pyrin domain containing 9 647304 8 7 8 6 2 4 0 0 2 0 0.077 0.57 -2421 TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 307384 6 5 6 2 1 2 1 0 0 2 0.077 0.57 -2422 MYBPHL myosin binding protein H-like 245728 3 3 3 1 0 2 0 0 1 0 0.077 0.57 -2423 PDCD6 programmed cell death 6 125580 4 4 4 0 4 0 0 0 0 0 0.077 0.57 -2424 ZNF114 zinc finger protein 114 283584 5 5 5 1 1 2 1 0 1 0 0.077 0.57 -2425 SF1 splicing factor 1 424144 6 6 6 1 3 0 1 0 2 0 0.077 0.57 -2426 REEP2 receptor accessory protein 2 174160 4 4 4 0 1 1 2 0 0 0 0.077 0.57 -2427 FAM65A family with sequence similarity 65, member A 818464 11 10 11 1 4 6 1 0 0 0 0.077 0.58 -2428 FAM49A family with sequence similarity 49, member A 226688 3 3 3 1 0 2 1 0 0 0 0.077 0.58 -2429 CCNG1 cyclin G1 203392 3 3 3 0 0 2 1 0 0 0 0.078 0.58 -2430 PKIA protein kinase (cAMP-dependent, catalytic) inhibitor alpha 53536 1 1 1 0 0 1 0 0 0 0 0.078 0.58 -2431 METTL7A methyltransferase like 7A 166432 3 3 3 1 2 1 0 0 0 0 0.078 0.58 -2432 HSD17B10 hydroxysteroid (17-beta) dehydrogenase 10 175864 2 2 2 0 0 0 0 0 2 0 0.078 0.58 -2433 MAGEB18 melanoma antigen family B, 18 230568 3 3 3 2 0 2 1 0 0 0 0.078 0.58 -2434 DISP1 dispatched homolog 1 (Drosophila) 1026956 15 10 14 5 8 4 2 0 1 0 0.078 0.58 -2435 CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 476000 6 6 6 0 1 3 1 0 1 0 0.078 0.58 -2436 ADCY1 adenylate cyclase 1 (brain) 683704 8 8 8 5 4 2 2 0 0 0 0.078 0.58 -2437 ARPC5L actin related protein 2/3 complex, subunit 5-like 72800 2 2 2 0 0 1 0 0 1 0 0.078 0.58 -2438 CCDC108 coiled-coil domain containing 108 1286832 15 12 15 4 1 7 4 0 3 0 0.078 0.58 -2439 WDR5B WD repeat domain 5B 223328 3 3 3 1 1 1 1 0 0 0 0.078 0.58 -2440 RAB11FIP2 RAB11 family interacting protein 2 (class I) 349216 4 4 4 0 0 1 2 0 1 0 0.078 0.58 -2441 AKR1B15 206304 3 3 3 0 1 2 0 0 0 0 0.078 0.58 -2442 LST1 leukocyte specific transcript 1 49724 1 1 1 1 0 0 0 0 1 0 0.078 0.58 -2443 FCER1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide 177856 3 3 3 0 0 1 2 0 0 0 0.078 0.58 -2444 ZNF180 zinc finger protein 180 470176 12 7 11 2 0 11 1 0 0 0 0.078 0.58 -2445 BCL9 B-cell CLL/lymphoma 9 965216 12 10 12 2 3 6 0 0 3 0 0.079 0.58 -2446 PGAP3 174440 3 3 3 0 0 2 0 1 0 0 0.079 0.58 -2447 AP1AR 197488 3 3 3 0 2 0 0 0 1 0 0.079 0.58 -2448 SLC16A5 solute carrier family 16, member 5 (monocarboxylic acid transporter 6) 344512 4 4 4 0 0 1 1 0 2 0 0.079 0.58 -2449 ATP8A2 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 801184 15 10 15 2 3 7 4 0 1 0 0.079 0.58 -2450 CPSF7 326592 5 5 5 0 3 1 0 0 1 0 0.079 0.58 -2451 BCL10 B-cell CLL/lymphoma 10 159936 3 3 3 1 0 1 1 0 1 0 0.079 0.58 -2452 AGMAT agmatine ureohydrolase (agmatinase) 197624 4 4 3 2 3 0 0 0 1 0 0.079 0.58 -2453 SLC6A11 solute carrier family 6 (neurotransmitter transporter, GABA), member 11 408884 7 6 7 6 3 2 2 0 0 0 0.079 0.58 -2454 SULT1C4 sulfotransferase family, cytosolic, 1C, member 4 209888 3 3 1 0 2 0 0 1 0 0 0.079 0.58 -2455 ARHGEF5 Rho guanine nucleotide exchange factor (GEF) 5 655424 7 7 7 2 2 2 2 1 0 0 0.079 0.58 -2456 BRWD1 bromodomain and WD repeat domain containing 1 1624504 13 11 13 4 1 6 3 0 3 0 0.079 0.58 -2457 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8) 329084 5 5 5 2 0 3 1 0 1 0 0.079 0.58 -2458 PSMB5 proteasome (prosome, macropain) subunit, beta type, 5 180096 2 2 2 0 1 0 0 0 1 0 0.079 0.58 -2459 CHML choroideremia-like (Rab escort protein 2) 442400 5 4 5 1 0 2 2 0 1 0 0.079 0.58 -2460 TP53TG5 200032 3 3 3 0 0 2 1 0 0 0 0.079 0.58 -2461 FPR3 formyl peptide receptor 3 238784 4 4 4 1 3 0 1 0 0 0 0.079 0.58 -2462 OR1J4 olfactory receptor, family 1, subfamily J, member 4 211904 3 3 3 2 0 1 1 0 1 0 0.079 0.58 -2463 BAMBI BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) 160160 4 3 4 1 0 1 1 0 2 0 0.079 0.58 -2464 CLIP4 CAP-GLY domain containing linker protein family, member 4 487872 7 6 7 2 2 3 2 0 0 0 0.079 0.58 -2465 SYTL5 synaptotagmin-like 5 505432 7 6 7 2 1 3 3 0 0 0 0.079 0.58 -2466 SPATA9 spermatogenesis associated 9 175840 3 3 3 0 0 1 2 0 0 0 0.079 0.58 -2467 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 317856 5 4 5 1 1 2 1 0 1 0 0.079 0.58 -2468 XG Xg blood group 90608 2 2 2 1 1 0 1 0 0 0 0.079 0.58 -2469 TMCO2 transmembrane and coiled-coil domains 2 124768 3 3 3 0 2 0 1 0 0 0 0.079 0.58 -2470 ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 454272 9 6 9 4 2 3 2 0 2 0 0.079 0.58 -2471 BTF3 basic transcription factor 3 114212 2 2 2 0 1 1 0 0 0 0 0.079 0.58 -2472 MRPL20 mitochondrial ribosomal protein L20 44152 1 1 1 0 1 0 0 0 0 0 0.080 0.58 -2473 GSTM3 glutathione S-transferase M3 (brain) 148160 3 3 3 1 1 0 1 0 1 0 0.080 0.58 -2474 SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 212592 3 3 3 0 0 2 1 0 0 0 0.080 0.58 -2475 TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 172928 3 3 3 1 1 0 2 0 0 0 0.080 0.58 -2476 CT45A5 75684 2 2 2 0 1 0 1 0 0 0 0.080 0.58 -2477 FGF6 fibroblast growth factor 6 143136 3 3 3 2 0 2 0 0 1 0 0.080 0.58 -2478 CHD6 chromodomain helicase DNA binding protein 6 1857156 19 16 19 6 5 7 5 0 2 0 0.080 0.58 -2479 ZNF582 zinc finger protein 582 351680 4 4 4 2 0 0 4 0 0 0 0.080 0.58 -2480 ACSL4 acyl-CoA synthetase long-chain family member 4 491008 4 4 4 1 0 1 1 0 2 0 0.080 0.58 -2481 ATP5L ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G 72576 2 2 2 0 1 0 1 0 0 0 0.080 0.58 -2482 WDR91 WD repeat domain 91 516096 9 8 9 3 6 1 2 0 0 0 0.080 0.58 -2483 SLC35B3 solute carrier family 35, member B3 279104 4 4 4 1 1 2 0 0 1 0 0.080 0.58 -2484 MED8 mediator complex subunit 8 201488 3 3 3 0 1 2 0 0 0 0 0.080 0.58 -2485 FBXL17 F-box and leucine-rich repeat protein 17 212800 4 4 4 0 1 3 0 0 0 0 0.080 0.58 -2486 ARF4 ADP-ribosylation factor 4 127008 3 3 2 0 3 0 0 0 0 0 0.080 0.58 -2487 SMOC2 SPARC related modular calcium binding 2 285480 5 5 5 2 4 0 1 0 0 0 0.080 0.58 -2488 MARCH8 membrane-associated ring finger (C3HC4) 8 201600 4 4 4 1 3 0 1 0 0 0 0.080 0.58 -2489 KIF16B kinesin family member 16B 904148 14 10 13 1 6 3 1 0 4 0 0.081 0.58 -2490 OR8K3 olfactory receptor, family 8, subfamily K, member 3 211232 3 3 3 1 0 2 1 0 0 0 0.081 0.58 -2491 ZSWIM3 zinc finger, SWIM-type containing 3 470176 7 6 7 1 1 4 2 0 0 0 0.081 0.58 -2492 CEP290 centrosomal protein 290kDa 1630680 20 12 20 1 5 4 6 0 3 2 0.081 0.58 -2493 NXF1 nuclear RNA export factor 1 437696 7 7 7 2 5 0 1 0 1 0 0.081 0.58 -2494 C9orf80 chromosome 9 open reading frame 80 74144 3 2 3 0 0 1 2 0 0 0 0.081 0.58 -2495 HEATR1 HEAT repeat containing 1 1480864 16 13 16 3 4 10 2 0 0 0 0.081 0.58 -2496 PAX4 paired box 4 239232 5 5 5 1 1 3 1 0 0 0 0.081 0.58 -2497 LYRM2 LYR motif containing 2 62496 1 1 1 0 0 0 0 0 1 0 0.081 0.58 -2498 ZNF567 zinc finger protein 567 417312 6 5 6 0 1 4 1 0 0 0 0.081 0.58 -2499 OR52N4 olfactory receptor, family 52, subfamily N, member 4 217280 3 3 3 1 0 1 2 0 0 0 0.081 0.58 -2500 ACTL9 266588 6 6 5 0 6 0 0 0 0 0 0.081 0.59 -2501 METTL13 463708 8 7 8 1 3 4 1 0 0 0 0.081 0.59 -2502 PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 560308 6 5 6 5 1 1 1 0 3 0 0.081 0.59 -2503 WNT3 wingless-type MMTV integration site family, member 3 228704 4 4 4 2 2 1 1 0 0 0 0.081 0.59 -2504 HYOU1 hypoxia up-regulated 1 694400 8 8 7 1 5 2 1 0 0 0 0.081 0.59 -2505 NEIL1 nei endonuclease VIII-like 1 (E. coli) 258300 5 5 5 0 3 1 0 1 0 0 0.081 0.59 -2506 PGBD1 piggyBac transposable element derived 1 549696 6 6 6 1 1 2 2 0 1 0 0.081 0.59 -2507 SLN sarcolipin 22400 1 1 1 0 1 0 0 0 0 0 0.081 0.59 -2508 SIRPD signal-regulatory protein delta 136640 3 3 3 0 3 0 0 0 0 0 0.081 0.59 -2509 S100A9 S100 calcium binding protein A9 79072 2 2 2 0 1 0 1 0 0 0 0.082 0.59 -2510 ZNF552 zinc finger protein 552 266196 3 3 3 0 0 1 1 0 1 0 0.082 0.59 -2511 SCGB1D1 secretoglobin, family 1D, member 1 63840 2 2 2 0 0 2 0 0 0 0 0.082 0.59 -2512 CPA6 carboxypeptidase A6 304192 4 4 4 0 2 0 2 0 0 0 0.082 0.59 -2513 COQ2 coenzyme Q2 homolog, prenyltransferase (yeast) 187128 3 3 3 0 0 1 2 0 0 0 0.082 0.59 -2514 TAS2R8 taste receptor, type 2, member 8 209216 2 2 2 1 0 1 1 0 0 0 0.082 0.59 -2515 CPSF4 cleavage and polyadenylation specific factor 4, 30kDa 179620 4 4 4 1 2 1 1 0 0 0 0.082 0.59 -2516 SIGLEC12 sialic acid binding Ig-like lectin 12 409920 6 5 6 3 0 4 2 0 0 0 0.082 0.59 -2517 ZSCAN20 zinc finger and SCAN domain containing 20 707840 8 7 8 1 2 2 3 0 1 0 0.082 0.59 -2518 ZNF443 zinc finger protein 443 455168 11 6 10 0 2 8 0 0 1 0 0.082 0.59 -2519 FAM170A 225344 5 5 4 1 3 1 1 0 0 0 0.082 0.59 -2520 KIR3DL2 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 251392 4 4 4 0 2 1 1 0 0 0 0.082 0.59 -2521 SETD3 SET domain containing 3 420896 6 6 6 2 1 1 2 0 2 0 0.082 0.59 -2522 OR5R1 olfactory receptor, family 5, subfamily R, member 1 219296 3 3 3 2 0 1 2 0 0 0 0.082 0.59 -2523 STX16 syntaxin 16 220920 3 3 3 0 0 1 1 0 1 0 0.082 0.59 -2524 C2orf69 182448 3 3 3 0 1 1 1 0 0 0 0.082 0.59 -2525 PRSS1 protease, serine, 1 (trypsin 1) 171136 3 3 3 3 1 1 0 1 0 0 0.082 0.59 -2526 CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 349216 4 4 4 5 3 0 1 0 0 0 0.082 0.59 -2527 PLCXD2 phosphatidylinositol-specific phospholipase C, X domain containing 2 208544 3 3 3 2 2 0 1 0 0 0 0.082 0.59 -2528 KIF11 kinesin family member 11 730016 7 7 7 2 0 2 4 0 1 0 0.082 0.59 -2529 ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 3345244 41 19 41 7 13 11 13 0 2 2 0.082 0.59 -2530 TRIM41 tripartite motif-containing 41 427176 6 6 6 2 2 3 0 0 1 0 0.082 0.59 -2531 PHF20L1 PHD finger protein 20-like 1 723520 8 7 7 5 0 4 1 0 3 0 0.083 0.59 -2532 ZNF75A zinc finger protein 75a 202272 3 3 3 0 1 1 1 0 0 0 0.083 0.59 -2533 LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 66304 1 1 1 0 0 0 0 0 1 0 0.083 0.59 -2534 GBF1 golgi-specific brefeldin A resistance factor 1 1283772 12 12 12 3 4 3 2 1 2 0 0.083 0.59 -2535 THAP3 THAP domain containing, apoptosis associated protein 3 104944 2 2 2 0 1 0 0 0 1 0 0.083 0.59 -2536 C12orf11 chromosome 12 open reading frame 11 489440 7 6 7 0 1 3 2 0 1 0 0.083 0.59 -2537 CSNK2B casein kinase 2, beta polypeptide 125748 2 2 2 0 0 1 0 0 1 0 0.083 0.59 -2538 CHIT1 chitinase 1 (chitotriosidase) 323680 5 5 5 1 3 1 0 0 1 0 0.083 0.59 -2539 SLC17A3 solute carrier family 17 (sodium phosphate), member 3 345184 5 5 5 0 2 1 2 0 0 0 0.083 0.59 -2540 TNC tenascin C (hexabrachion) 1503936 16 15 16 16 7 5 3 0 1 0 0.083 0.59 -2541 SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 83776 2 2 2 0 1 0 0 0 1 0 0.083 0.59 -2542 CNPY1 canopy 1 homolog (zebrafish) 65184 2 2 2 0 1 1 0 0 0 0 0.083 0.59 -2543 MAP7D2 MAP7 domain containing 2 504328 8 6 7 1 3 0 2 0 3 0 0.083 0.59 -2544 HS2ST1 heparan sulfate 2-O-sulfotransferase 1 247072 4 4 4 1 2 1 0 0 1 0 0.083 0.59 -2545 CPLX4 complexin 4 110880 2 2 2 1 1 1 0 0 0 0 0.083 0.59 -2546 C11orf87 132864 4 4 4 1 3 1 0 0 0 0 0.083 0.59 -2547 HTR3D 5-hydroxytryptamine (serotonin) receptor 3 family member D 197120 3 3 3 0 0 3 0 0 0 0 0.084 0.59 -2548 TMCC1 transmembrane and coiled-coil domain family 1 443072 5 5 5 3 3 1 0 0 1 0 0.084 0.59 -2549 TRIM6-TRIM34 TRIM6-TRIM34 579040 8 7 8 1 1 4 2 0 1 0 0.084 0.59 -2550 KCNE1 potassium voltage-gated channel, Isk-related family, member 1 88256 3 3 3 1 2 1 0 0 0 0 0.084 0.59 -2551 BOD1 90104 2 2 2 0 0 1 1 0 0 0 0.084 0.59 -2552 PHLDB2 pleckstrin homology-like domain, family B, member 2 833728 8 8 8 1 3 2 2 0 1 0 0.084 0.59 -2553 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) 289184 5 4 5 1 1 3 1 0 0 0 0.084 0.59 -2554 FAM64A family with sequence similarity 64, member A 164192 3 3 3 0 1 1 1 0 0 0 0.084 0.59 -2555 NANOS2 nanos homolog 2 (Drosophila) 94304 3 3 3 0 2 1 0 0 0 0 0.084 0.59 -2556 CSTL1 cystatin-like 1 100800 2 2 2 1 0 1 1 0 0 0 0.084 0.59 -2557 RNF25 ring finger protein 25 318080 3 3 3 0 0 0 2 0 1 0 0.084 0.59 -2558 TRERF1 transcriptional regulating factor 1 796992 10 9 10 2 3 4 2 0 1 0 0.084 0.59 -2559 BMI1 BMI1 polycomb ring finger oncogene 227808 3 3 3 0 1 1 1 0 0 0 0.084 0.59 -2560 IMPG2 interphotoreceptor matrix proteoglycan 2 851648 9 7 8 6 0 1 3 0 5 0 0.084 0.59 -2561 TSEN15 96888 2 2 2 0 0 2 0 0 0 0 0.084 0.59 -2562 PTGIS prostaglandin I2 (prostacyclin) synthase 328160 5 5 5 2 3 0 1 0 1 0 0.084 0.59 -2563 GPM6A glycoprotein M6A 195552 4 4 4 1 0 2 2 0 0 0 0.084 0.59 -2564 OR10K2 olfactory receptor, family 10, subfamily K, member 2 211232 2 2 2 0 0 1 1 0 0 0 0.084 0.59 -2565 ZNF714 zinc finger protein 714 368792 4 4 4 1 0 2 1 0 1 0 0.084 0.59 -2566 AR androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) 500364 6 6 6 6 3 0 3 0 0 0 0.084 0.59 -2567 GAD1 glutamate decarboxylase 1 (brain, 67kDa) 423360 9 7 9 1 4 5 0 0 0 0 0.085 0.59 -2568 SLC22A8 solute carrier family 22 (organic anion transporter), member 8 373856 5 5 5 1 3 0 1 0 1 0 0.085 0.59 -2569 CATSPER4 cation channel, sperm associated 4 326680 6 5 6 0 2 2 2 0 0 0 0.085 0.59 -2570 LRMP lymphoid-restricted membrane protein 351232 4 4 4 1 2 1 1 0 0 0 0.085 0.59 -2571 TMEM79 transmembrane protein 79 263760 4 4 4 1 2 0 2 0 0 0 0.085 0.59 -2572 SOX5 SRY (sex determining region Y)-box 5 529088 8 7 7 1 3 2 2 1 0 0 0.085 0.60 -2573 SDSL serine dehydratase-like 228032 4 4 4 0 1 2 1 0 0 0 0.085 0.60 -2574 B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 245280 6 5 6 1 3 1 2 0 0 0 0.085 0.60 -2575 LRRC20 leucine rich repeat containing 20 127904 3 3 3 1 2 0 0 0 1 0 0.085 0.60 -2576 ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 243628 3 3 3 1 0 0 2 0 1 0 0.085 0.60 -2577 OR5P2 olfactory receptor, family 5, subfamily P, member 2 217952 3 3 3 0 1 1 1 0 0 0 0.085 0.60 -2578 C10orf71 chromosome 10 open reading frame 71 478176 5 4 5 4 2 1 0 0 2 0 0.085 0.60 -2579 DYNC1I1 dynein, cytoplasmic 1, intermediate chain 1 448448 7 6 7 4 4 2 0 0 1 0 0.085 0.60 -2580 WFDC12 WAP four-disulfide core domain 12 77952 1 1 1 1 0 0 0 0 1 0 0.085 0.60 -2581 IFRD1 interferon-related developmental regulator 1 306264 5 4 5 0 2 1 1 0 1 0 0.086 0.60 -2582 DUSP27 dual specificity phosphatase 27 (putative) 754904 9 9 9 2 2 5 1 0 1 0 0.086 0.60 -2583 ZNF440 zinc finger protein 440 404096 6 4 6 1 2 0 1 0 1 2 0.086 0.60 -2584 LCMT1 leucine carboxyl methyltransferase 1 234976 3 3 3 0 0 1 1 1 0 0 0.086 0.60 -2585 RNF169 ring finger protein 169 375760 5 5 5 0 3 1 1 0 0 0 0.086 0.60 -2586 ANKRD1 ankyrin repeat domain 1 (cardiac muscle) 223104 6 5 6 1 1 3 2 0 0 0 0.086 0.60 -2587 C7orf11 chromosome 7 open reading frame 11 71396 2 2 2 0 0 2 0 0 0 0 0.086 0.60 -2588 SFTPD surfactant, pulmonary-associated protein D 258944 4 3 4 1 2 0 2 0 0 0 0.086 0.60 -2589 CALCOCO2 calcium binding and coiled-coil domain 2 311136 3 3 3 1 0 2 1 0 0 0 0.086 0.60 -2590 ZNF586 zinc finger protein 586 264544 4 4 4 0 2 1 1 0 0 0 0.086 0.60 -2591 PDCD5 programmed cell death 5 74368 2 2 2 0 0 1 1 0 0 0 0.086 0.60 -2592 DNAJC19 DnaJ (Hsp40) homolog, subfamily C, member 19 84000 2 2 2 0 0 1 1 0 0 0 0.086 0.60 -2593 ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 830144 16 10 16 5 4 6 4 0 0 2 0.086 0.60 -2594 SPRR2F small proline-rich protein 2F 49952 1 1 1 0 0 1 0 0 0 0 0.086 0.60 -2595 RALGAPA1 1437480 13 12 12 1 2 7 4 0 0 0 0.086 0.60 -2596 SCFD1 sec1 family domain containing 1 445656 4 4 4 0 1 1 1 0 1 0 0.086 0.60 -2597 PCID2 PCI domain containing 2 277984 5 5 5 1 3 1 1 0 0 0 0.086 0.60 -2598 IL15 interleukin 15 114912 2 2 2 0 0 1 1 0 0 0 0.087 0.60 -2599 ZNF829 zinc finger protein 829 297696 10 5 10 1 0 10 0 0 0 0 0.087 0.60 -2600 TDRD1 tudor domain containing 1 822080 10 8 10 1 0 4 4 0 2 0 0.087 0.60 -2601 ZNF543 zinc finger protein 543 407456 7 6 7 1 3 2 2 0 0 0 0.087 0.60 -2602 HLX H2.0-like homeobox 287840 8 7 8 2 3 1 3 0 1 0 0.087 0.60 -2603 TMEM195 transmembrane protein 195 311360 6 4 6 0 1 1 3 0 1 0 0.087 0.60 -2604 HMMR hyaluronan-mediated motility receptor (RHAMM) 504000 6 6 6 0 0 5 1 0 0 0 0.087 0.60 -2605 POTEG 278292 5 4 5 0 0 2 2 0 1 0 0.087 0.60 -2606 ALKBH8 alkB, alkylation repair homolog 8 (E. coli) 168224 2 2 2 0 0 0 1 0 1 0 0.087 0.60 -2607 DARS aspartyl-tRNA synthetase 351680 4 4 4 0 0 2 2 0 0 0 0.087 0.60 -2608 KIF9 kinesin family member 9 549472 7 6 7 1 4 0 1 0 2 0 0.087 0.60 -2609 RCC2 regulator of chromosome condensation 2 315392 6 6 6 1 4 0 1 0 1 0 0.087 0.60 -2610 SEC14L4 SEC14-like 4 (S. cerevisiae) 267568 5 5 5 2 1 3 0 0 1 0 0.087 0.60 -2611 CMTM5 CKLF-like MARVEL transmembrane domain containing 5 109984 2 2 2 1 1 0 0 0 1 0 0.087 0.60 -2612 EAPP E2F-associated phosphoprotein 197568 3 3 3 0 0 2 1 0 0 0 0.087 0.60 -2613 SPAG1 sperm associated antigen 1 562240 6 6 6 0 0 2 3 0 1 0 0.087 0.60 -2614 TBX18 T-box 18 374640 7 7 7 2 5 1 1 0 0 0 0.087 0.60 -2615 STAT2 signal transducer and activator of transcription 2, 113kDa 590840 7 6 7 0 3 2 0 0 2 0 0.087 0.60 -2616 TRPM6 transient receptor potential cation channel, subfamily M, member 6 1394400 21 13 20 1 5 11 3 0 2 0 0.087 0.60 -2617 DCTN2 dynactin 2 (p50) 263600 4 4 4 1 2 0 2 0 0 0 0.087 0.60 -2618 SRRM4 366284 7 6 7 2 3 2 1 0 1 0 0.087 0.60 -2619 DMXL2 Dmx-like 2 2075576 22 14 22 4 3 6 8 1 2 2 0.087 0.60 -2620 NETO1 neuropilin (NRP) and tolloid (TLL)-like 1 376320 6 6 6 1 1 4 1 0 0 0 0.087 0.60 -2621 RABGAP1L RAB GTPase activating protein 1-like 592032 7 7 7 0 0 4 2 1 0 0 0.087 0.60 -2622 MYLK3 myosin light chain kinase 3 541940 6 6 6 0 1 2 2 0 1 0 0.087 0.60 -2623 GPR126 G protein-coupled receptor 126 874000 10 10 10 3 4 4 2 0 0 0 0.088 0.60 -2624 FKSG83 128576 2 2 2 0 1 0 1 0 0 0 0.088 0.60 -2625 OR2D3 olfactory receptor, family 2, subfamily D, member 3 223328 4 4 4 3 0 2 1 0 1 0 0.088 0.60 -2626 GJC3 gap junction protein, gamma 3, 30.2kDa 184156 2 2 2 1 1 0 0 0 1 0 0.088 0.60 -2627 KCNH1 potassium voltage-gated channel, subfamily H (eag-related), member 1 675136 12 9 12 2 5 3 2 0 0 2 0.088 0.60 -2628 NEK5 NIMA (never in mitosis gene a)-related kinase 5 476672 6 5 6 4 3 0 1 0 2 0 0.088 0.60 -2629 WBP5 WW domain binding protein 5 71456 2 2 2 0 1 1 0 0 0 0 0.088 0.60 -2630 KLRC3 killer cell lectin-like receptor subfamily C, member 3 148344 3 3 3 0 1 2 0 0 0 0 0.088 0.60 -2631 EPHX1 epoxide hydrolase 1, microsomal (xenobiotic) 313600 5 5 5 1 2 2 0 1 0 0 0.088 0.60 -2632 SERPINB10 serpin peptidase inhibitor, clade B (ovalbumin), member 10 273728 5 4 5 1 0 1 3 0 1 0 0.088 0.60 -2633 SH3BGR SH3 domain binding glutamic acid-rich protein 166656 4 4 4 0 1 1 1 0 1 0 0.088 0.60 -2634 RNF130 ring finger protein 130 246260 4 4 4 1 1 2 0 0 1 0 0.088 0.60 -2635 TMEM49 transmembrane protein 49 283360 4 4 4 1 2 1 1 0 0 0 0.088 0.60 -2636 ZNF645 zinc finger protein 645 287168 3 3 3 5 1 0 1 1 0 0 0.088 0.60 -2637 CCNL2 cyclin L2 178648 2 2 2 0 0 0 0 0 2 0 0.088 0.60 -2638 GUCA2B guanylate cyclase activator 2B (uroguanylin) 78624 2 2 2 0 2 0 0 0 0 0 0.088 0.60 -2639 SLC2A2 solute carrier family 2 (facilitated glucose transporter), member 2 362656 5 4 5 4 0 1 3 0 1 0 0.088 0.60 -2640 WDR3 WD repeat domain 3 657664 8 7 7 1 4 4 0 0 0 0 0.088 0.60 -2641 IFI35 interferon-induced protein 35 186472 3 3 3 0 1 1 0 0 1 0 0.088 0.60 -2642 PUS7L pseudouridylate synthase 7 homolog (S. cerevisiae)-like 478912 7 5 7 1 0 2 3 0 2 0 0.088 0.60 -2643 PPM1D protein phosphatase 1D magnesium-dependent, delta isoform 348684 4 4 4 1 0 2 1 0 1 0 0.088 0.60 -2644 WDR26 WD repeat domain 26 359968 5 5 5 1 2 2 1 0 0 0 0.088 0.60 -2645 OXSM 3-oxoacyl-ACP synthase, mitochondrial 310912 5 5 5 0 1 4 0 0 0 0 0.088 0.60 -2646 TANK TRAF family member-associated NFKB activator 294784 6 5 5 0 3 1 2 0 0 0 0.089 0.60 -2647 WDR52 WD repeat domain 52 678496 6 6 5 1 3 2 1 0 0 0 0.089 0.60 -2648 ZNF638 zinc finger protein 638 1354080 12 10 12 4 3 3 2 0 4 0 0.089 0.60 -2649 NBPF15 neuroblastoma breakpoint family, member 15 169372 4 4 4 0 2 1 1 0 0 0 0.089 0.60 -2650 MS4A2 membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide) 173152 3 3 3 1 0 1 1 0 1 0 0.089 0.60 -2651 TMEM71 transmembrane protein 71 196448 3 3 3 0 0 3 0 0 0 0 0.089 0.60 -2652 XKR6 XK, Kell blood group complex subunit-related family, member 6 334880 4 4 3 6 2 0 2 0 0 0 0.089 0.60 -2653 HIGD1B HIG1 domain family, member 1B 69888 2 2 2 0 2 0 0 0 0 0 0.089 0.60 -2654 CLDN10 claudin 10 207200 4 4 4 0 0 2 2 0 0 0 0.089 0.60 -2655 PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like 257824 3 3 3 0 0 1 1 0 1 0 0.089 0.60 -2656 ZBTB16 zinc finger and BTB domain containing 16 448896 7 7 7 2 3 2 1 0 1 0 0.089 0.60 -2657 DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 234752 3 3 3 0 0 2 1 0 0 0 0.089 0.60 -2658 SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 183768 4 4 4 0 3 0 1 0 0 0 0.089 0.60 -2659 PSG1 pregnancy specific beta-1-glycoprotein 1 296128 4 4 3 1 1 1 1 1 0 0 0.089 0.61 -2660 KIAA1310 KIAA1310 495960 6 6 6 0 2 3 1 0 0 0 0.089 0.61 -2661 TRIP12 thyroid hormone receptor interactor 12 1375136 14 13 14 6 7 2 2 0 3 0 0.089 0.61 -2662 GTF2H1 general transcription factor IIH, polypeptide 1, 62kDa 381472 4 4 4 1 0 2 2 0 0 0 0.090 0.61 -2663 GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 52192 1 1 1 0 0 1 0 0 0 0 0.090 0.61 -2664 OR7G1 olfactory receptor, family 7, subfamily G, member 1 206080 4 3 4 0 1 2 1 0 0 0 0.090 0.61 -2665 AKT2 v-akt murine thymoma viral oncogene homolog 2 335468 6 6 6 3 3 1 1 0 1 0 0.090 0.61 -2666 OR10H5 olfactory receptor, family 10, subfamily H, member 5 213248 3 3 3 0 2 1 0 0 0 0 0.090 0.61 -2667 ALLC allantoicase 269892 5 4 5 1 2 1 0 0 2 0 0.090 0.61 -2668 TLL2 tolloid-like 2 688772 10 10 9 5 6 2 2 0 0 0 0.090 0.61 -2669 HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 999040 13 8 13 4 3 4 3 0 3 0 0.090 0.61 -2670 RBM44 RNA binding motif protein 44 684936 11 7 11 1 1 5 2 0 3 0 0.090 0.61 -2671 DNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 3 306488 4 4 4 2 0 3 0 0 1 0 0.090 0.61 -2672 GPR115 G protein-coupled receptor 115 472696 5 5 5 2 1 1 2 1 0 0 0.090 0.61 -2673 ITIH5L inter-alpha (globulin) inhibitor H5-like 879152 8 8 8 0 3 2 2 1 0 0 0.090 0.61 -2674 DUSP16 dual specificity phosphatase 16 452928 5 5 5 0 2 2 0 0 1 0 0.090 0.61 -2675 C9orf150 chromosome 9 open reading frame 150 131796 2 2 2 0 0 0 1 0 1 0 0.090 0.61 -2676 NT5C2 5'-nucleotidase, cytosolic II 392488 4 4 4 1 1 1 0 0 2 0 0.090 0.61 -2677 CAPZA3 capping protein (actin filament) muscle Z-line, alpha 3 200312 3 3 3 2 0 2 1 0 0 0 0.090 0.61 -2678 CIRBP cold inducible RNA binding protein 113820 2 2 2 0 0 1 0 0 1 0 0.090 0.61 -2679 CPZ carboxypeptidase Z 383472 6 6 6 0 3 1 0 0 2 0 0.090 0.61 -2680 ECHDC1 enoyl Coenzyme A hydratase domain containing 1 207872 3 3 3 0 1 0 2 0 0 0 0.090 0.61 -2681 SLC16A9 solute carrier family 16, member 9 (monocarboxylic acid transporter 9) 347200 5 4 5 0 0 1 3 0 1 0 0.090 0.61 -2682 KCNS3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 331520 4 4 4 3 2 0 2 0 0 0 0.091 0.61 -2683 SLC44A1 solute carrier family 44, member 1 435992 6 5 6 4 2 2 1 0 1 0 0.091 0.61 -2684 GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 231980 4 4 4 2 3 1 0 0 0 0 0.091 0.61 -2685 ZNF385B zinc finger protein 385B 324352 4 4 4 2 3 1 0 0 0 0 0.091 0.61 -2686 UBE2R2 ubiquitin-conjugating enzyme E2R 2 165088 3 3 3 0 2 0 1 0 0 0 0.091 0.61 -2687 C5orf42 chromosome 5 open reading frame 42 1426096 19 12 19 5 3 11 4 0 1 0 0.091 0.61 -2688 TMEM189-UBE2V1 TMEM189-UBE2V1 228480 6 5 6 0 3 2 1 0 0 0 0.091 0.61 -2689 CTSL1 cathepsin L1 230720 4 4 4 0 0 2 2 0 0 0 0.091 0.61 -2690 IQUB IQ motif and ubiquitin domain containing 542976 6 5 6 2 0 3 0 0 1 2 0.091 0.61 -2691 AVPR2 arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) 243740 6 5 6 0 2 3 1 0 0 0 0.091 0.61 -2692 C4orf45 130144 2 2 2 0 0 0 1 0 1 0 0.091 0.61 -2693 PGC progastricsin (pepsinogen C) 269472 5 4 5 0 2 2 1 0 0 0 0.091 0.61 -2694 FAM163B 34348 1 1 1 0 1 0 0 0 0 0 0.091 0.61 -2695 MELK maternal embryonic leucine zipper kinase 453376 6 5 6 2 1 2 1 0 2 0 0.091 0.61 -2696 EIF5A eukaryotic translation initiation factor 5A 128800 2 2 2 0 1 0 1 0 0 0 0.091 0.61 -2697 NTAN1 N-terminal asparagine amidase 198912 3 3 3 1 1 0 1 0 1 0 0.091 0.61 -2698 UBE4B ubiquitination factor E4B (UFD2 homolog, yeast) 900704 9 9 9 2 5 1 1 0 2 0 0.091 0.61 -2699 TRIM43 tripartite motif-containing 43 168000 3 3 3 0 0 3 0 0 0 0 0.091 0.61 -2700 CDC20B cell division cycle 20 homolog B (S. cerevisiae) 359744 4 4 4 1 2 0 1 0 1 0 0.091 0.61 -2701 PRICKLE1 prickle homolog 1 (Drosophila) 565376 11 7 11 1 3 4 3 0 1 0 0.091 0.61 -2702 ZNF430 zinc finger protein 430 388192 5 5 5 0 1 2 2 0 0 0 0.092 0.61 -2703 PLEKHA3 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 209440 3 3 3 0 0 1 1 0 1 0 0.092 0.61 -2704 RFTN1 raftlin, lipid raft linker 1 397152 5 5 5 3 1 3 0 0 1 0 0.092 0.61 -2705 MYPN myopalladin 904736 10 9 10 3 3 5 0 0 0 2 0.092 0.61 -2706 USP2 ubiquitin specific peptidase 2 393292 5 5 5 0 2 2 0 0 1 0 0.092 0.61 -2707 UBXN4 353696 5 5 5 1 0 4 1 0 0 0 0.092 0.61 -2708 UBB ubiquitin B 155456 2 2 2 0 1 0 0 0 1 0 0.092 0.61 -2709 PDE9A phosphodiesterase 9A 435008 6 6 6 0 3 0 1 0 2 0 0.092 0.61 -2710 OR5H6 olfactory receptor, family 5, subfamily H, member 6 219968 3 3 3 0 1 1 0 0 1 0 0.092 0.61 -2711 APOC1 apolipoprotein C-I 59136 1 1 1 0 0 0 0 0 1 0 0.092 0.61 -2712 S100B S100 calcium binding protein B 64288 2 2 2 0 1 1 0 0 0 0 0.092 0.61 -2713 C9orf103 chromosome 9 open reading frame 103 98112 2 2 2 0 0 2 0 0 0 0 0.092 0.61 -2714 MLC1 megalencephalic leukoencephalopathy with subcortical cysts 1 242816 5 5 5 0 3 1 1 0 0 0 0.093 0.61 -2715 OR2AT4 olfactory receptor, family 2, subfamily AT, member 4 216608 3 3 3 0 0 1 1 0 1 0 0.093 0.62 -2716 PLSCR4 phospholipid scramblase 4 228928 5 4 5 1 2 3 0 0 0 0 0.093 0.62 -2717 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 458528 7 6 7 1 4 2 1 0 0 0 0.093 0.62 -2718 SMG5 Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) 703136 8 7 8 1 2 2 1 0 3 0 0.093 0.62 -2719 UBE2B ubiquitin-conjugating enzyme E2B (RAD6 homolog) 96632 2 2 2 0 1 0 0 0 1 0 0.093 0.62 -2720 CCDC158 769216 8 7 8 1 1 3 2 0 2 0 0.093 0.62 -2721 NUCB1 nucleobindin 1 312368 4 4 4 0 1 0 1 0 2 0 0.093 0.62 -2722 ABL2 v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) 827008 7 7 7 2 1 4 1 0 1 0 0.093 0.62 -2723 ZC3HC1 zinc finger, C3HC-type containing 1 346976 7 5 7 3 1 3 3 0 0 0 0.093 0.62 -2724 CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 378504 6 6 6 1 3 2 1 0 0 0 0.093 0.62 -2725 SAP130 Sin3A-associated protein, 130kDa 706496 8 8 8 3 3 2 1 1 1 0 0.093 0.62 -2726 F5 coagulation factor V (proaccelerin, labile factor) 1517600 21 14 21 2 3 13 3 0 2 0 0.093 0.62 -2727 C16orf68 chromosome 16 open reading frame 68 281036 4 4 4 1 1 1 0 0 2 0 0.094 0.62 -2728 PROK2 prokineticin 2 53536 1 1 1 0 0 1 0 0 0 0 0.094 0.62 -2729 SLC44A3 solute carrier family 44, member 3 420896 6 5 6 0 1 1 2 0 2 0 0.094 0.62 -2730 SLC6A13 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 417760 6 6 6 1 2 1 3 0 0 0 0.094 0.62 -2731 POLR3B polymerase (RNA) III (DNA directed) polypeptide B 787136 11 8 11 3 5 2 3 0 1 0 0.094 0.62 -2732 CNNM1 cyclin M1 411808 9 8 9 2 5 2 2 0 0 0 0.094 0.62 -2733 ZNF280C zinc finger protein 280C 506760 6 5 6 3 1 2 2 0 1 0 0.094 0.62 -2734 OR51B5 olfactory receptor, family 51, subfamily B, member 5 211232 3 3 3 1 0 2 1 0 0 0 0.094 0.62 -2735 VRK3 vaccinia related kinase 3 329952 4 4 4 0 0 4 0 0 0 0 0.094 0.62 -2736 TRIM45 tripartite motif-containing 45 390768 5 5 5 3 1 3 0 0 1 0 0.094 0.62 -2737 ALDH1A2 aldehyde dehydrogenase 1 family, member A2 360416 6 6 6 1 4 2 0 0 0 0 0.094 0.62 -2738 ZNF284 zinc finger protein 284 402752 6 5 6 0 0 5 1 0 0 0 0.094 0.62 -2739 ATP6AP2 ATPase, H+ transporting, lysosomal accessory protein 2 234752 3 3 2 0 0 1 0 0 2 0 0.094 0.62 -2740 RTN1 reticulon 1 450548 7 7 7 1 4 1 2 0 0 0 0.094 0.62 -2741 GRP gastrin-releasing peptide 70784 1 1 1 0 0 0 1 0 0 0 0.094 0.62 -2742 EVI2A ecotropic viral integration site 2A 176512 2 2 2 0 0 1 0 0 1 0 0.094 0.62 -2743 TSSK3 testis-specific serine kinase 3 182560 4 4 4 2 3 1 0 0 0 0 0.095 0.62 -2744 CARD18 62944 1 1 1 0 0 1 0 0 0 0 0.095 0.62 -2745 GNAO1 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O 323584 5 5 5 1 3 1 1 0 0 0 0.095 0.62 -2746 GOLPH3L golgi phosphoprotein 3-like 195776 2 2 2 0 0 0 1 0 1 0 0.095 0.62 -2747 CCDC93 coiled-coil domain containing 93 437232 5 5 4 1 1 2 0 0 2 0 0.095 0.62 -2748 SH3GLB1 SH3-domain GRB2-like endophilin B1 254016 4 4 4 1 0 3 1 0 0 0 0.095 0.62 -2749 UBLCP1 ubiquitin-like domain containing CTD phosphatase 1 223328 3 3 3 1 0 1 1 0 1 0 0.095 0.62 -2750 LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) 43120 1 1 1 0 0 1 0 0 0 0 0.095 0.62 -2751 USP6 ubiquitin specific peptidase 6 (Tre-2 oncogene) 963508 10 7 10 1 1 5 1 0 3 0 0.095 0.62 -2752 RFXAP regulatory factor X-associated protein 108656 1 1 1 0 0 0 0 0 1 0 0.095 0.62 -2753 ALDH5A1 aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase) 299884 4 4 4 2 1 2 1 0 0 0 0.095 0.62 -2754 UPRT uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) 214592 4 3 4 0 3 0 0 0 1 0 0.095 0.62 -2755 TTC23L 251328 4 4 4 1 2 1 0 0 1 0 0.095 0.62 -2756 ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 1087072 11 10 11 4 4 3 1 0 3 0 0.095 0.62 -2757 FCRLA Fc receptor-like A 257824 3 3 3 1 1 2 0 0 0 0 0.095 0.62 -2758 P2RY4 pyrimidinergic receptor P2Y, G-protein coupled, 4 246848 6 5 6 2 5 1 0 0 0 0 0.095 0.62 -2759 IL24 interleukin 24 145152 2 2 2 0 0 0 2 0 0 0 0.095 0.62 -2760 ZRANB2 zinc finger, RAN-binding domain containing 2 239904 4 4 4 1 3 1 0 0 0 0 0.096 0.62 -2761 ACSS2 acyl-CoA synthetase short-chain family member 2 458056 6 6 6 0 2 3 0 1 0 0 0.096 0.62 -2762 MAGEA10 melanoma antigen family A, 10 249536 3 3 3 1 1 1 1 0 0 0 0.096 0.62 -2763 TESK2 testis-specific kinase 2 393344 3 3 3 2 1 0 0 0 2 0 0.096 0.62 -2764 SRPX sushi-repeat-containing protein, X-linked 298816 4 4 4 1 2 0 1 0 1 0 0.096 0.62 -2765 ITGA8 integrin, alpha 8 709576 8 8 8 2 3 2 0 1 2 0 0.096 0.62 -2766 LRRTM3 leucine rich repeat transmembrane neuronal 3 393792 5 5 5 1 1 1 2 0 1 0 0.096 0.62 -2767 ICA1L islet cell autoantigen 1,69kDa-like 337568 5 5 5 1 0 4 1 0 0 0 0.096 0.62 -2768 EMX1 empty spiracles homeobox 1 63168 2 2 2 0 1 0 0 0 1 0 0.096 0.62 -2769 EFNA5 ephrin-A5 158368 5 3 5 1 3 2 0 0 0 0 0.096 0.62 -2770 INO80E 144140 2 2 2 0 0 0 0 1 1 0 0.096 0.62 -2771 PPM1A protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform 308664 7 5 7 1 4 0 3 0 0 0 0.096 0.62 -2772 RNF103 ring finger protein 103 464576 6 6 6 1 3 2 0 0 1 0 0.096 0.62 -2773 TXNDC6 thioredoxin domain containing 6 185472 3 3 2 2 2 0 1 0 0 0 0.096 0.62 -2774 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 134848 3 3 3 1 0 2 1 0 0 0 0.096 0.62 -2775 PODXL2 podocalyxin-like 2 330484 5 3 5 0 2 1 0 0 2 0 0.096 0.62 -2776 MRGPRX3 MAS-related GPR, member X3 217952 4 4 4 1 2 1 1 0 0 0 0.096 0.62 -2777 IQCA1 525248 9 7 9 1 5 2 1 0 1 0 0.096 0.62 -2778 SLCO5A1 solute carrier organic anion transporter family, member 5A1 578508 9 8 9 2 3 3 2 0 1 0 0.096 0.62 -2779 ANKRD30A ankyrin repeat domain 30A 865676 7 6 7 6 1 2 1 0 3 0 0.096 0.62 -2780 ZNF484 zinc finger protein 484 576800 9 6 8 1 2 4 3 0 0 0 0.096 0.62 -2781 TNFRSF13B tumor necrosis factor receptor superfamily, member 13B 195916 4 4 4 0 2 2 0 0 0 0 0.096 0.62 -2782 NRBF2 nuclear receptor binding factor 2 192164 2 2 2 0 0 1 0 0 1 0 0.096 0.62 -2783 ACCN3 amiloride-sensitive cation channel 3 333032 4 4 4 2 0 1 0 1 2 0 0.097 0.62 -2784 UBE2L3 ubiquitin-conjugating enzyme E2L 3 100800 2 2 2 1 0 0 2 0 0 0 0.097 0.62 -2785 KLHDC5 kelch domain containing 5 281148 5 5 5 1 2 3 0 0 0 0 0.097 0.62 -2786 SNRNP25 93584 2 2 2 0 0 1 1 0 0 0 0.097 0.62 -2787 SLC24A5 solute carrier family 24, member 5 344736 4 4 4 1 2 2 0 0 0 0 0.097 0.62 -2788 HMGA2 high mobility group AT-hook 2 64632 1 1 1 0 0 0 1 0 0 0 0.097 0.62 -2789 SLC2A14 solute carrier family 2 (facilitated glucose transporter), member 14 338688 7 6 7 2 2 5 0 0 0 0 0.097 0.62 -2790 SERPINB12 serpin peptidase inhibitor, clade B (ovalbumin), member 12 279104 4 4 4 1 1 2 1 0 0 0 0.097 0.62 -2791 CENPJ centromere protein J 914144 11 8 11 3 3 2 3 0 3 0 0.097 0.62 -2792 CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 1019424 12 8 12 3 1 5 3 0 3 0 0.097 0.62 -2793 HEY1 hairy/enhancer-of-split related with YRPW motif 1 184628 3 3 3 2 0 1 1 0 1 0 0.097 0.62 -2794 UTRN utrophin 2373952 25 16 25 5 3 14 4 0 2 2 0.097 0.62 -2795 KIAA1409 KIAA1409 1694560 27 15 27 8 7 14 4 1 1 0 0.097 0.62 -2796 SERGEF secretion regulating guanine nucleotide exchange factor 303968 4 4 4 1 0 4 0 0 0 0 0.097 0.62 -2797 GPBP1L1 GC-rich promoter binding protein 1-like 1 328160 4 4 4 0 1 3 0 0 0 0 0.097 0.62 -2798 COL4A1 collagen, type IV, alpha 1 1145760 14 11 14 2 7 1 4 0 2 0 0.097 0.62 -2799 SDC2 syndecan 2 131520 3 3 3 2 1 2 0 0 0 0 0.097 0.62 -2800 IL20RA interleukin 20 receptor, alpha 357952 5 5 4 0 3 1 0 0 1 0 0.097 0.62 -2801 BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 565040 7 7 7 2 5 1 1 0 0 0 0.097 0.62 -2802 MEIS3 Meis homeobox 3 279136 5 5 5 0 5 0 0 0 0 0 0.097 0.62 -2803 SYCE1 synaptonemal complex central element protein 1 196776 3 3 3 0 1 0 1 0 1 0 0.097 0.62 -2804 GLCCI1 glucocorticoid induced transcript 1 277760 3 3 3 1 1 0 1 0 1 0 0.097 0.62 -2805 TTYH2 tweety homolog 2 (Drosophila) 372064 6 6 6 2 2 2 2 0 0 0 0.097 0.62 -2806 OR1C1 olfactory receptor, family 1, subfamily C, member 1 212576 3 3 3 3 1 1 1 0 0 0 0.097 0.62 -2807 C1orf114 chromosome 1 open reading frame 114 346528 5 4 5 0 1 2 0 0 0 2 0.097 0.62 -2808 NOTCH2NL Notch homolog 2 (Drosophila) N-terminal like 161084 2 2 2 2 0 0 1 0 1 0 0.097 0.62 -2809 ZBTB33 zinc finger and BTB domain containing 33 453152 5 5 5 1 1 3 1 0 0 0 0.097 0.62 -2810 UBAP2L ubiquitin associated protein 2-like 754432 8 8 8 1 2 6 0 0 0 0 0.097 0.62 -2811 OR10C1 olfactory receptor, family 10, subfamily C, member 1 157472 3 3 3 0 3 0 0 0 0 0 0.097 0.62 -2812 CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1 358848 4 4 4 3 2 1 0 0 1 0 0.098 0.63 -2813 CPNE4 copine IV 388416 6 6 6 2 2 2 2 0 0 0 0.098 0.63 -2814 ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 571424 7 7 7 0 2 1 2 0 2 0 0.098 0.63 -2815 BGLAP bone gamma-carboxyglutamate (gla) protein (osteocalcin) 65608 2 2 2 1 1 1 0 0 0 0 0.098 0.63 -2816 SAT2 spermidine/spermine N1-acetyltransferase family member 2 120288 3 3 3 0 2 1 0 0 0 0 0.098 0.63 -2817 DMRT2 doublesex and mab-3 related transcription factor 2 274624 4 4 4 0 1 2 1 0 0 0 0.098 0.63 -2818 CTSB cathepsin B 236544 5 4 5 0 2 1 1 1 0 0 0.098 0.63 -2819 TIAF1 TGFB1-induced anti-apoptotic factor 1 78848 1 1 1 0 0 0 0 0 1 0 0.098 0.63 -2820 NIPBL Nipped-B homolog (Drosophila) 1920888 19 15 19 2 7 3 7 0 2 0 0.098 0.63 -2821 PTPN1 protein tyrosine phosphatase, non-receptor type 1 292840 5 5 5 1 1 2 2 0 0 0 0.098 0.63 -2822 NCOA5 nuclear receptor coactivator 5 396032 5 5 5 0 1 0 1 1 2 0 0.098 0.63 -2823 DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 2780416 36 13 35 3 6 10 8 0 3 9 0.098 0.63 -2824 FAM175A 275940 3 3 3 1 0 1 0 0 2 0 0.098 0.63 -2825 C1orf128 chromosome 1 open reading frame 128 102592 2 2 2 0 1 0 1 0 0 0 0.098 0.63 -2826 LATS1 LATS, large tumor suppressor, homolog 1 (Drosophila) 766304 11 8 11 1 2 4 4 0 1 0 0.098 0.63 -2827 DAB2 disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) 529760 5 5 5 4 3 1 0 0 1 0 0.098 0.63 -2828 SC5DL sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like 205184 4 4 4 1 2 1 1 0 0 0 0.098 0.63 -2829 ZNF766 zinc finger protein 766 318752 3 3 3 0 0 2 0 0 1 0 0.098 0.63 -2830 SYPL1 synaptophysin-like 1 172116 2 2 2 0 0 2 0 0 0 0 0.098 0.63 -2831 BRE brain and reproductive organ-expressed (TNFRSF1A modulator) 315168 4 4 4 0 0 3 1 0 0 0 0.099 0.63 -2832 ZNF577 zinc finger protein 577 327712 5 5 5 0 1 3 1 0 0 0 0.099 0.63 -2833 GTPBP10 GTP-binding protein 10 (putative) 269696 3 3 3 0 0 3 0 0 0 0 0.099 0.63 -2834 PMP22 peripheral myelin protein 22 100624 2 2 2 0 1 1 0 0 0 0 0.099 0.63 -2835 TFCP2 transcription factor CP2 351456 5 4 5 0 2 0 1 0 2 0 0.099 0.63 -2836 USP3 ubiquitin specific peptidase 3 363552 7 6 7 0 1 4 2 0 0 0 0.099 0.63 -2837 CUL2 cullin 2 519232 5 5 4 0 1 1 0 0 3 0 0.099 0.63 -2838 CCDC103 coiled-coil domain containing 103 165984 2 2 2 1 0 2 0 0 0 0 0.099 0.63 -2839 STX12 syntaxin 12 191352 3 3 2 0 0 1 0 0 2 0 0.099 0.63 -2840 C22orf24 chromosome 22 open reading frame 24 85232 2 2 2 0 0 1 1 0 0 0 0.099 0.63 -2841 NOX4 NADPH oxidase 4 401940 7 5 7 1 0 3 3 0 1 0 0.099 0.63 -2842 SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) 215936 3 3 3 1 1 0 2 0 0 0 0.099 0.63 -2843 SYNPO2 synaptopodin 2 854784 15 9 15 5 4 7 3 0 1 0 0.099 0.63 -2844 NRBP2 nuclear receptor binding protein 2 147496 2 2 2 0 0 1 0 0 1 0 0.099 0.63 -2845 ZFP91 zinc finger protein 91 homolog (mouse) 334208 3 3 3 1 0 2 0 0 1 0 0.099 0.63 -2846 OCM oncomodulin 77504 2 2 2 1 2 0 0 0 0 0 0.099 0.63 -2847 ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide 260736 4 4 4 1 0 0 4 0 0 0 0.099 0.63 -2848 C7orf51 chromosome 7 open reading frame 51 388304 3 3 2 1 0 0 1 0 2 0 0.100 0.63 -2849 ANKRD40 ankyrin repeat domain 40 252448 3 3 3 0 0 2 1 0 0 0 0.100 0.63 -2850 GPR45 G protein-coupled receptor 45 251552 7 6 7 1 5 2 0 0 0 0 0.100 0.63 -2851 TMEM216 63616 1 1 1 1 0 0 0 1 0 0 0.100 0.63 -2852 COX17 COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) 44800 1 1 1 0 0 0 1 0 0 0 0.100 0.63 -2853 OMA1 OMA1 homolog, zinc metallopeptidase (S. cerevisiae) 359968 4 4 4 1 0 1 1 0 2 0 0.100 0.63 -2854 NUS1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) 119984 2 2 2 1 0 1 1 0 0 0 0.100 0.63 -2855 FAM71C family with sequence similarity 71, member C 164416 3 3 3 1 2 0 1 0 0 0 0.10 0.63 -2856 PABPC3 poly(A) binding protein, cytoplasmic 3 425600 6 6 6 4 3 1 1 1 0 0 0.10 0.63 -2857 KRT75 keratin 75 372708 6 6 6 6 4 2 0 0 0 0 0.10 0.63 -2858 OR2G2 olfactory receptor, family 2, subfamily G, member 2 214592 3 3 3 0 2 1 0 0 0 0 0.10 0.63 -2859 CUL4B cullin 4B 630360 6 5 5 1 1 2 1 0 2 0 0.10 0.63 -2860 WDR92 WD repeat domain 92 247744 3 3 3 1 1 2 0 0 0 0 0.10 0.63 -2861 SLC27A6 solute carrier family 27 (fatty acid transporter), member 6 425600 9 6 9 1 2 4 3 0 0 0 0.10 0.63 -2862 GPR180 G protein-coupled receptor 180 271040 3 3 3 0 0 1 1 0 1 0 0.10 0.63 -2863 CRYGB crystallin, gamma B 119952 3 3 3 0 2 0 1 0 0 0 0.10 0.63 -2864 ENKUR 178080 3 3 3 1 1 0 0 1 1 0 0.10 0.63 -2865 USP33 ubiquitin specific peptidase 33 647584 10 8 10 0 2 3 5 0 0 0 0.10 0.63 -2866 ZNF610 zinc finger protein 610 314720 7 5 7 1 5 2 0 0 0 0 0.10 0.63 -2867 TDRD10 tudor domain containing 10 264768 5 5 4 0 3 2 0 0 0 0 0.10 0.63 -2868 NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 976724 13 10 13 4 6 2 4 0 1 0 0.10 0.63 -2869 ZNF846 363328 6 5 6 1 2 2 0 0 2 0 0.10 0.63 -2870 ADAM23 ADAM metallopeptidase domain 23 534240 5 5 5 1 2 1 1 0 1 0 0.10 0.63 -2871 ELMO1 engulfment and cell motility 1 508032 8 7 8 2 4 2 2 0 0 0 0.10 0.63 -2872 PRKCB 501144 7 7 7 5 3 4 0 0 0 0 0.10 0.63 -2873 C4orf41 chromosome 4 open reading frame 41 788032 8 8 7 6 4 3 1 0 0 0 0.10 0.63 -2874 EML1 echinoderm microtubule associated protein like 1 565740 11 9 11 2 7 3 1 0 0 0 0.10 0.63 -2875 MYLK myosin light chain kinase 1287592 14 13 14 3 3 7 3 0 1 0 0.10 0.63 -2876 KIAA1324L KIAA1324-like 529032 7 6 7 4 1 3 2 0 1 0 0.10 0.63 -2877 P2RY12 purinergic receptor P2Y, G-protein coupled, 12 231392 4 4 4 0 1 3 0 0 0 0 0.10 0.63 -2878 BRDT bromodomain, testis-specific 649992 7 6 7 2 3 1 1 0 2 0 0.10 0.63 -2879 GABRP gamma-aminobutyric acid (GABA) A receptor, pi 304416 4 4 4 0 1 0 1 0 2 0 0.10 0.63 -2880 SKAP2 src kinase associated phosphoprotein 2 252672 3 3 3 0 1 1 1 0 0 0 0.10 0.63 -2881 SUN3 249536 4 4 3 3 2 1 1 0 0 0 0.10 0.63 -2882 VTN vitronectin 318656 6 6 6 1 5 1 0 0 0 0 0.10 0.63 -2883 MRPS18C mitochondrial ribosomal protein S18C 101472 2 2 2 0 0 0 1 0 1 0 0.10 0.63 -2884 EID3 EP300 interacting inhibitor of differentiation 3 219296 5 5 5 0 3 1 1 0 0 0 0.10 0.63 -2885 FGG fibrinogen gamma chain 314824 4 4 4 3 0 4 0 0 0 0 0.10 0.63 -2886 BCOR BCL6 co-repressor 1155512 10 9 10 2 0 3 2 0 5 0 0.10 0.63 -2887 CDH17 cadherin 17, LI cadherin (liver-intestine) 575008 6 6 6 4 3 2 1 0 0 0 0.10 0.63 -2888 AJAP1 adherens junctions associated protein 1 226072 5 4 5 1 1 1 2 0 1 0 0.10 0.63 -2889 MFSD9 major facilitator superfamily domain containing 9 324072 4 4 4 3 1 0 2 0 1 0 0.10 0.63 -2890 EPRS glutamyl-prolyl-tRNA synthetase 1045408 12 10 12 0 1 5 6 0 0 0 0.10 0.63 -2891 PHYHD1 phytanoyl-CoA dioxygenase domain containing 1 208920 3 3 3 0 2 0 1 0 0 0 0.10 0.63 -2892 DTYMK deoxythymidylate kinase (thymidylate kinase) 59120 1 1 1 0 0 0 1 0 0 0 0.10 0.63 -2893 NFX1 nuclear transcription factor, X-box binding 1 782880 8 7 8 0 1 4 1 0 2 0 0.10 0.63 -2894 SUFU suppressor of fused homolog (Drosophila) 321328 4 4 4 0 1 0 2 0 1 0 0.10 0.64 -2895 SPAG6 sperm associated antigen 6 345672 6 5 6 1 2 2 0 0 2 0 0.10 0.64 -2896 CALN1 calneuron 1 164712 3 3 3 3 2 1 0 0 0 0 0.10 0.64 -2897 OR4F15 olfactory receptor, family 4, subfamily F, member 15 211232 3 3 3 1 1 1 1 0 0 0 0.10 0.64 -2898 G6PC glucose-6-phosphatase, catalytic subunit 245056 4 4 4 1 2 0 2 0 0 0 0.10 0.64 -2899 MFSD5 major facilitator superfamily domain containing 5 306208 4 4 3 1 2 0 1 0 1 0 0.10 0.64 -2900 HERC5 hect domain and RLD 5 649152 8 6 8 3 1 4 1 0 2 0 0.10 0.64 -2901 STAB2 stabilin 2 1764392 20 15 20 7 5 9 4 1 1 0 0.10 0.64 -2902 RGS4 regulator of G-protein signaling 4 201104 3 3 3 1 0 0 2 0 1 0 0.10 0.64 -2903 FARSB phenylalanyl-tRNA synthetase, beta subunit 411712 8 6 8 0 1 3 3 0 1 0 0.10 0.64 -2904 ARL13B ADP-ribosylation factor-like 13B 297248 3 3 3 0 0 2 0 0 1 0 0.10 0.64 -2905 G3BP1 GTPase activating protein (SH3 domain) binding protein 1 323680 6 6 6 0 3 3 0 0 0 0 0.10 0.64 -2906 OR8B2 olfactory receptor, family 8, subfamily B, member 2 211904 2 2 2 1 0 0 1 0 1 0 0.10 0.64 -2907 C12orf4 chromosome 12 open reading frame 4 383264 5 4 5 1 0 3 0 0 2 0 0.10 0.64 -2908 C2orf86 523936 8 6 8 1 3 3 1 0 1 0 0.10 0.64 -2909 USHBP1 Usher syndrome 1C binding protein 1 455924 8 7 8 2 3 5 0 0 0 0 0.10 0.64 -2910 ATP10D ATPase, class V, type 10D 978656 12 9 11 3 6 3 2 0 1 0 0.10 0.64 -2911 FOXP1 forkhead box P1 507808 6 6 6 0 5 1 0 0 0 0 0.10 0.64 -2912 CGB chorionic gonadotropin, beta polypeptide 52280 1 1 1 0 0 0 0 0 1 0 0.10 0.64 -2913 CARD6 caspase recruitment domain family, member 6 700224 6 6 6 4 2 2 1 0 1 0 0.10 0.64 -2914 CTSA cathepsin A 331716 3 3 3 2 0 0 0 0 3 0 0.10 0.64 -2915 EFCAB7 EF-hand calcium binding domain 7 435008 4 4 4 0 1 1 1 0 1 0 0.10 0.64 -2916 SNRPE small nuclear ribonucleoprotein polypeptide E 66976 2 2 2 0 1 0 1 0 0 0 0.10 0.64 -2917 CHKA choline kinase alpha 257992 4 4 4 0 0 3 1 0 0 0 0.10 0.64 -2918 ZCCHC9 zinc finger, CCHC domain containing 9 187264 3 3 3 2 0 2 0 0 1 0 0.10 0.64 -2919 TRIM32 tripartite motif-containing 32 440384 5 5 5 1 0 3 1 0 1 0 0.10 0.64 -2920 MYL6B myosin, light chain 6B, alkali, smooth muscle and non-muscle 145824 3 3 3 1 1 2 0 0 0 0 0.10 0.64 -2921 CCDC30 532400 8 4 8 1 1 4 0 0 1 2 0.10 0.64 -2922 SETBP1 SET binding protein 1 990388 17 11 17 2 2 9 4 1 1 0 0.10 0.64 -2923 PLK1S1 420264 6 5 6 0 2 2 1 0 1 0 0.10 0.64 -2924 NAA15 596600 6 6 6 1 1 3 1 0 1 0 0.10 0.64 -2925 SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 254464 3 3 2 0 0 0 1 0 2 0 0.10 0.64 -2926 METTL8 methyltransferase like 8 171400 3 3 3 0 0 2 1 0 0 0 0.10 0.64 -2927 BTN3A1 butyrophilin, subfamily 3, member A1 347704 4 4 4 2 1 1 1 0 1 0 0.10 0.64 -2928 CXCL5 chemokine (C-X-C motif) ligand 5 72704 2 2 2 0 0 2 0 0 0 0 0.10 0.64 -2929 RGS20 regulator of G-protein signaling 20 224248 4 4 4 2 3 0 0 0 1 0 0.10 0.64 -2930 UBR2 ubiquitin protein ligase E3 component n-recognin 2 1222144 13 9 13 2 2 4 6 0 1 0 0.10 0.64 -2931 KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 283712 4 4 4 2 1 1 1 0 1 0 0.10 0.64 -2932 TXNRD3IT1 91840 2 2 2 1 0 1 1 0 0 0 0.10 0.64 -2933 ACTRT1 actin-related protein T1 254240 3 3 3 3 0 2 0 0 1 0 0.10 0.64 -2934 LHCGR luteinizing hormone/choriogonadotropin receptor 445056 4 4 4 1 1 2 1 0 0 0 0.10 0.64 -2935 KIAA1370 KIAA1370 705800 9 6 9 0 1 3 3 0 2 0 0.10 0.64 -2936 WASL Wiskott-Aldrich syndrome-like 340912 7 5 7 1 2 2 1 0 2 0 0.10 0.64 -2937 PTPRU protein tyrosine phosphatase, receptor type, U 953540 13 12 12 4 11 0 1 0 1 0 0.10 0.64 -2938 ZC3H11A zinc finger CCCH-type containing 11A 553028 5 5 5 0 1 2 0 0 2 0 0.10 0.64 -2939 CTNNBL1 catenin, beta like 1 380016 5 5 5 1 2 1 2 0 0 0 0.10 0.64 -2940 SLC35F1 solute carrier family 35, member F1 262808 6 4 6 1 2 1 1 0 0 2 0.10 0.64 -2941 PINX1 227360 3 3 3 1 1 0 1 0 1 0 0.10 0.64 -2942 GUCA1A guanylate cyclase activator 1A (retina) 139076 3 3 3 0 0 1 1 0 1 0 0.10 0.64 -2943 TYMS thymidylate synthetase 182924 3 3 3 0 0 1 1 0 1 0 0.10 0.64 -2944 OR56A3 olfactory receptor, family 56, subfamily A, member 3 213248 4 4 4 1 0 2 2 0 0 0 0.10 0.64 -2945 C7orf53 chromosome 7 open reading frame 53 91392 2 2 2 0 0 0 2 0 0 0 0.10 0.64 -2946 HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 234976 4 4 4 3 2 0 2 0 0 0 0.10 0.64 -2947 ZCCHC24 110208 2 2 2 1 1 1 0 0 0 0 0.10 0.64 -2948 CCDC110 coiled-coil domain containing 110 563976 7 5 7 1 1 2 1 0 3 0 0.10 0.64 -2949 PEX12 peroxisomal biogenesis factor 12 244608 5 4 5 0 1 2 2 0 0 0 0.10 0.64 -2950 C11orf10 chromosome 11 open reading frame 10 56448 1 1 1 1 0 0 0 0 1 0 0.10 0.64 -2951 MUM1 melanoma associated antigen (mutated) 1 395764 5 5 5 0 1 2 0 0 2 0 0.10 0.64 -2952 ZMYM5 zinc finger, MYM-type 5 473680 8 6 8 1 2 4 2 0 0 0 0.10 0.64 -2953 APOC2 apolipoprotein C-II 71232 1 1 1 0 0 1 0 0 0 0 0.10 0.64 -2954 XBP1 X-box binding protein 1 185248 3 3 3 0 0 2 1 0 0 0 0.11 0.64 -2955 FABP2 fatty acid binding protein 2, intestinal 92960 2 2 2 2 1 0 0 0 1 0 0.11 0.64 -2956 HLA-DPB1 major histocompatibility complex, class II, DP beta 1 123256 2 2 2 4 0 0 1 0 1 0 0.11 0.64 -2957 KLKB1 kallikrein B, plasma (Fletcher factor) 1 441952 6 5 6 2 2 1 1 0 2 0 0.11 0.64 -2958 DRP2 dystrophin related protein 2 624592 7 7 7 3 3 2 1 0 1 0 0.11 0.64 -2959 KCTD8 potassium channel tetramerisation domain containing 8 242760 4 4 4 1 2 2 0 0 0 0 0.11 0.64 -2960 NEXN nexilin (F actin binding protein) 465024 5 5 5 0 0 2 2 0 1 0 0.11 0.64 -2961 NEBL nebulette 790720 9 7 9 5 1 4 1 0 3 0 0.11 0.64 -2962 GPR156 G protein-coupled receptor 156 554148 8 7 7 3 1 4 1 0 2 0 0.11 0.64 -2963 IQCF2 IQ motif containing F2 113568 2 2 2 0 1 0 0 0 1 0 0.11 0.64 -2964 ARNT aryl hydrocarbon receptor nuclear translocator 544096 5 5 5 3 0 1 3 0 1 0 0.11 0.64 -2965 GJA8 gap junction protein, alpha 8, 50kDa 292544 5 5 5 2 2 3 0 0 0 0 0.11 0.64 -2966 RARS2 arginyl-tRNA synthetase 2, mitochondrial 407008 5 5 5 1 0 2 1 0 2 0 0.11 0.64 -2967 AKR1C4 aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4) 225792 3 3 3 1 2 0 1 0 0 0 0.11 0.64 -2968 RPS18 ribosomal protein S18 106624 2 2 2 0 0 0 2 0 0 0 0.11 0.64 -2969 GRK4 G protein-coupled receptor kinase 4 396760 5 5 5 1 2 1 1 0 1 0 0.11 0.64 -2970 TRIM38 tripartite motif-containing 38 318528 6 4 6 0 0 2 3 0 1 0 0.11 0.64 -2971 HEY2 hairy/enhancer-of-split related with YRPW motif 2 229576 6 5 6 1 5 1 0 0 0 0 0.11 0.65 -2972 C15orf33 chromosome 15 open reading frame 33 355488 6 5 5 3 2 1 3 0 0 0 0.11 0.65 -2973 FBN1 fibrillin 1 1988224 33 16 33 8 11 15 5 0 2 0 0.11 0.65 -2974 ZNF266 zinc finger protein 266 373184 8 5 6 3 5 3 0 0 0 0 0.11 0.65 -2975 RICTOR 1170216 13 10 13 1 3 8 1 0 1 0 0.11 0.65 -2976 FGF12 fibroblast growth factor 12 166332 3 3 3 4 3 0 0 0 0 0 0.11 0.65 -2977 COLEC10 collectin sub-family member 10 (C-type lectin) 192192 3 3 3 0 2 0 0 0 1 0 0.11 0.65 -2978 NHEDC1 Na+/H+ exchanger domain containing 1 352716 4 3 4 2 0 1 2 0 1 0 0.11 0.65 -2979 IL9 interleukin 9 101920 2 2 2 1 0 1 1 0 0 0 0.11 0.65 -2980 S100G S100 calcium binding protein G 55552 1 1 1 0 0 1 0 0 0 0 0.11 0.65 -2981 RP2 retinitis pigmentosa 2 (X-linked recessive) 225936 4 4 4 0 1 2 1 0 0 0 0.11 0.65 -2982 HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 220192 2 2 2 2 0 1 0 0 1 0 0.11 0.65 -2983 SCHIP1 schwannomin interacting protein 1 236000 4 4 4 0 0 2 2 0 0 0 0.11 0.65 -2984 DNAH3 dynein, axonemal, heavy chain 3 2822176 27 18 26 12 10 9 2 0 4 2 0.11 0.65 -2985 FLJ44635 96544 2 2 2 1 1 0 1 0 0 0 0.11 0.65 -2986 GPR139 G protein-coupled receptor 139 239680 4 4 4 0 3 1 0 0 0 0 0.11 0.65 -2987 NDST2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 587744 5 5 5 1 1 1 1 0 2 0 0.11 0.65 -2988 C11orf82 chromosome 11 open reading frame 82 674912 5 5 5 2 0 1 2 0 2 0 0.11 0.65 -2989 LOC286238 77728 2 2 2 1 0 2 0 0 0 0 0.11 0.65 -2990 ZCCHC16 zinc finger, CCHC domain containing 16 209888 3 3 3 1 1 2 0 0 0 0 0.11 0.65 -2991 PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 593576 5 4 5 0 0 2 1 0 2 0 0.11 0.65 -2992 TMEM198 transmembrane protein 198 203504 4 3 4 2 2 1 0 0 1 0 0.11 0.65 -2993 MAPK12 mitogen-activated protein kinase 12 159348 2 2 2 0 0 0 0 0 2 0 0.11 0.65 -2994 C17orf42 chromosome 17 open reading frame 42 246176 3 3 3 0 2 1 0 0 0 0 0.11 0.65 -2995 EBF1 early B-cell factor 1 394216 6 6 6 1 3 2 0 0 1 0 0.11 0.65 -2996 RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 877604 12 10 12 6 7 3 2 0 0 0 0.11 0.65 -2997 ERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 849424 10 9 7 3 5 2 3 0 0 0 0.11 0.65 -2998 C10orf120 chromosome 10 open reading frame 120 228480 4 4 4 2 1 1 2 0 0 0 0.11 0.65 -2999 LIMA1 LIM domain and actin binding 1 520352 8 6 8 1 3 1 2 0 2 0 0.11 0.65 -3000 MANBA mannosidase, beta A, lysosomal 579952 7 7 7 3 2 1 3 0 1 0 0.11 0.65 -3001 CCNT2 cyclin T2 499296 6 6 6 4 0 3 2 0 1 0 0.11 0.65 -3002 NSUN2 NOL1/NOP2/Sun domain family, member 2 510720 5 5 5 0 2 3 0 0 0 0 0.11 0.65 -3003 GINS2 GINS complex subunit 2 (Psf2 homolog) 108416 2 2 2 0 1 0 0 0 1 0 0.11 0.65 -3004 CD79A CD79a molecule, immunoglobulin-associated alpha 142456 3 3 3 0 2 0 0 0 1 0 0.11 0.65 -3005 TRIM17 tripartite motif-containing 17 304976 4 4 4 0 1 1 0 0 2 0 0.11 0.65 -3006 GBP3 guanylate binding protein 3 409472 4 4 4 3 1 1 0 0 2 0 0.11 0.65 -3007 HHAT hedgehog acyltransferase 341824 5 5 5 1 1 3 0 0 1 0 0.11 0.65 -3008 KIAA1826 KIAA1826 234304 3 3 3 1 2 0 0 0 1 0 0.11 0.65 -3009 GOLGB1 golgin B1, golgi integral membrane protein 2209536 24 12 24 3 3 7 5 0 3 6 0.11 0.65 -3010 OR4D1 olfactory receptor, family 4, subfamily D, member 1 209888 3 3 3 1 0 2 0 0 1 0 0.11 0.65 -3011 NIT2 nitrilase family, member 2 194180 3 3 2 0 1 1 0 0 1 0 0.11 0.65 -3012 FAM134A family with sequence similarity 134, member A 309792 3 3 3 2 1 0 0 0 2 0 0.11 0.65 -3013 ZNF419 zinc finger protein 419 348544 7 4 7 2 1 3 2 0 1 0 0.11 0.65 -3014 TMEM178 transmembrane protein 178 133504 4 3 4 1 1 2 0 0 1 0 0.11 0.65 -3015 TNNT2 troponin T type 2 (cardiac) 213920 3 3 3 1 1 0 0 1 1 0 0.11 0.65 -3016 MFSD8 major facilitator superfamily domain containing 8 359520 4 4 4 0 2 1 0 1 0 0 0.11 0.65 -3017 CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 541408 7 7 7 1 3 2 1 0 1 0 0.11 0.65 -3018 OR7A5 olfactory receptor, family 7, subfamily A, member 5 215936 3 3 3 0 1 0 2 0 0 0 0.11 0.65 -3019 GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa 357816 6 5 6 1 1 0 3 0 2 0 0.11 0.65 -3020 RRAGB Ras-related GTP binding B 261856 4 4 4 1 1 2 1 0 0 0 0.11 0.65 -3021 FETUB fetuin B 263648 3 3 3 1 1 1 0 0 1 0 0.11 0.65 -3022 CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 329728 5 5 5 2 3 1 0 0 1 0 0.11 0.65 -3023 SIM1 single-minded homolog 1 (Drosophila) 523012 9 8 9 6 5 4 0 0 0 0 0.11 0.65 -3024 CAPN6 calpain 6 442176 4 4 4 0 0 1 2 0 1 0 0.11 0.65 -3025 C3orf27 chromosome 3 open reading frame 27 101696 2 2 2 0 1 0 1 0 0 0 0.11 0.65 -3026 ZNF551 zinc finger protein 551 437816 8 6 8 0 0 7 1 0 0 0 0.11 0.65 -3027 TTC31 tetratricopeptide repeat domain 31 358640 4 4 4 0 1 1 0 0 2 0 0.11 0.65 -3028 DNAH10 dynein, axonemal, heavy chain 10 2973768 45 22 45 12 17 17 7 0 4 0 0.11 0.65 -3029 ZNF491 zinc finger protein 491 295232 9 6 7 5 5 3 1 0 0 0 0.11 0.65 -3030 LONRF1 LON peptidase N-terminal domain and ring finger 1 368480 4 4 4 1 0 1 2 0 1 0 0.11 0.65 -3031 C13orf36 73472 3 2 3 1 0 1 2 0 0 0 0.11 0.65 -3032 UBE2U ubiquitin-conjugating enzyme E2U (putative) 160608 3 3 3 0 1 1 1 0 0 0 0.11 0.65 -3033 RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 514936 10 8 10 3 4 3 1 0 2 0 0.11 0.65 -3034 SIRPB1 signal-regulatory protein beta 1 272608 4 4 4 0 3 0 0 0 1 0 0.11 0.65 -3035 LNPEP leucyl/cystinyl aminopeptidase 700448 8 7 8 1 0 3 3 0 2 0 0.11 0.65 -3036 PDE7B phosphodiesterase 7B 308464 4 4 4 1 1 2 1 0 0 0 0.11 0.65 -3037 FANCD2 Fanconi anemia, complementation group D2 1036080 11 9 11 0 3 4 1 0 3 0 0.11 0.65 -3038 NRK Nik related kinase 963824 13 9 13 2 1 7 3 0 2 0 0.11 0.65 -3039 KALRN kalirin, RhoGEF kinase 2095884 23 18 23 9 7 9 5 0 2 0 0.11 0.65 -3040 GKAP1 G kinase anchoring protein 1 249680 3 2 3 0 0 1 1 0 1 0 0.11 0.65 -3041 CNGA2 cyclic nucleotide gated channel alpha 2 439064 4 4 4 2 3 0 0 0 1 0 0.11 0.65 -3042 NPL N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) 225568 3 3 3 2 2 0 0 0 1 0 0.11 0.65 -3043 ACVR2B activin A receptor, type IIB 342048 5 5 5 2 1 2 0 0 2 0 0.11 0.65 -3044 GEMIN6 gem (nuclear organelle) associated protein 6 114688 3 2 3 0 0 0 3 0 0 0 0.11 0.65 -3045 RABGGTB Rab geranylgeranyltransferase, beta subunit 231168 4 4 4 2 2 2 0 0 0 0 0.11 0.65 -3046 CPN1 carboxypeptidase N, polypeptide 1 316512 6 5 6 3 3 2 1 0 0 0 0.11 0.65 -3047 ZNF57 zinc finger protein 57 376264 4 4 4 1 0 1 2 0 1 0 0.11 0.65 -3048 NDEL1 nudE nuclear distribution gene E homolog (A. nidulans)-like 1 248416 7 5 7 0 3 2 2 0 0 0 0.11 0.65 -3049 AGL amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III) 1075200 10 10 10 1 5 3 1 0 1 0 0.11 0.65 -3050 KRT3 keratin 3 392536 6 6 6 1 4 1 0 1 0 0 0.11 0.65 -3051 USP45 ubiquitin specific peptidase 45 562912 5 5 5 1 0 2 2 0 1 0 0.11 0.65 -3052 SCUBE3 signal peptide, CUB domain, EGF-like 3 671944 11 9 11 1 4 5 1 0 1 0 0.11 0.65 -3053 CIR1 295848 4 4 4 0 2 0 1 0 1 0 0.11 0.65 -3054 C6orf58 chromosome 6 open reading frame 58 227808 3 3 3 0 1 2 0 0 0 0 0.11 0.65 -3055 ERMN ermin, ERM-like protein 203840 3 3 3 0 1 1 0 0 1 0 0.11 0.65 -3056 NOTCH3 Notch homolog 3 (Drosophila) 1150800 15 14 15 1 6 8 0 0 1 0 0.11 0.65 -3057 RNASET2 ribonuclease T2 166064 4 4 3 0 2 2 0 0 0 0 0.11 0.65 -3058 KLK15 kallikrein-related peptidase 15 169364 3 3 3 2 1 2 0 0 0 0 0.11 0.65 -3059 CAPRIN2 caprin family member 2 771540 12 8 11 2 5 3 1 0 3 0 0.11 0.65 -3060 CCDC121 coiled-coil domain containing 121 190624 2 2 2 0 0 1 0 0 1 0 0.11 0.65 -3061 UBN1 ubinuclein 1 777952 8 8 8 2 2 3 2 0 1 0 0.11 0.65 -3062 RRAGC Ras-related GTP binding C 221088 3 3 3 2 1 1 0 0 1 0 0.11 0.65 -3063 AQP10 aquaporin 10 199584 4 3 4 0 1 2 1 0 0 0 0.11 0.65 -3064 ALAS2 aminolevulinate, delta-, synthase 2 408336 6 6 6 0 3 3 0 0 0 0 0.11 0.65 -3065 PLAC8 placenta-specific 8 80640 2 2 2 0 1 1 0 0 0 0 0.11 0.65 -3066 OR1S2 olfactory receptor, family 1, subfamily S, member 2 219968 3 3 3 0 0 1 2 0 0 0 0.11 0.66 -3067 CD2AP CD2-associated protein 445120 7 5 7 2 2 4 1 0 0 0 0.11 0.66 -3068 PNPLA5 patatin-like phospholipase domain containing 5 232988 3 3 3 0 1 1 0 0 1 0 0.11 0.66 -3069 SLC17A2 solute carrier family 17 (sodium phosphate), member 2 302624 8 5 8 1 2 4 2 0 0 0 0.11 0.66 -3070 GPR133 G protein-coupled receptor 133 595544 8 7 8 4 5 1 1 0 1 0 0.11 0.66 -3071 RGS7 regulator of G-protein signaling 7 343168 6 5 6 0 1 4 1 0 0 0 0.11 0.66 -3072 FAM166B 150304 1 1 1 0 0 0 0 0 1 0 0.11 0.66 -3073 FAM107B family with sequence similarity 107, member B 210784 4 4 4 0 1 3 0 0 0 0 0.11 0.66 -3074 FBXO5 F-box protein 5 281568 3 3 3 2 0 1 0 0 2 0 0.11 0.66 -3075 JKAMP 214848 4 3 4 0 0 1 3 0 0 0 0.11 0.66 -3076 DEC1 deleted in esophageal cancer 1 51296 1 1 1 0 0 1 0 0 0 0 0.11 0.66 -3077 SCLT1 sodium channel and clathrin linker 1 481824 7 6 7 1 1 2 4 0 0 0 0.11 0.66 -3078 ZDHHC7 zinc finger, DHHC-type containing 7 213024 4 4 4 1 3 0 0 0 1 0 0.11 0.66 -3079 FBXL20 F-box and leucine-rich repeat protein 20 303240 3 3 3 1 1 0 1 0 1 0 0.11 0.66 -3080 BATF2 basic leucine zipper transcription factor, ATF-like 2 176704 3 3 3 0 1 1 1 0 0 0 0.11 0.66 -3081 C6orf48 chromosome 6 open reading frame 48 52864 1 1 1 0 0 0 0 0 1 0 0.11 0.66 -3082 C9orf171 201628 4 4 4 2 2 1 1 0 0 0 0.11 0.66 -3083 CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 174720 3 3 3 1 1 1 1 0 0 0 0.11 0.66 -3084 SYTL3 synaptotagmin-like 3 365664 4 4 4 1 0 1 1 0 2 0 0.11 0.66 -3085 TCTEX1D1 Tctex1 domain containing 1 124544 2 2 2 0 0 0 1 0 1 0 0.11 0.66 -3086 LHX8 LIM homeobox 8 232400 3 3 3 1 0 2 0 0 1 0 0.11 0.66 -3087 FANK1 fibronectin type III and ankyrin repeat domains 1 240940 3 3 3 3 2 0 0 0 1 0 0.11 0.66 -3088 PYGO2 pygopus homolog 2 (Drosophila) 218960 2 2 1 0 0 0 0 0 2 0 0.11 0.66 -3089 RNF150 ring finger protein 150 269704 8 7 7 2 6 1 1 0 0 0 0.11 0.66 -3090 ACPP acid phosphatase, prostate 296576 5 4 4 0 2 0 1 0 0 2 0.11 0.66 -3091 LRP2BP LRP2 binding protein 241024 5 4 5 1 2 2 0 0 1 0 0.11 0.66 -3092 OR2T12 olfactory receptor, family 2, subfamily T, member 12 216608 3 3 3 0 1 1 1 0 0 0 0.11 0.66 -3093 OR51A2 olfactory receptor, family 51, subfamily A, member 2 157912 2 2 2 1 1 1 0 0 0 0 0.11 0.66 -3094 SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 277088 4 4 4 1 0 4 0 0 0 0 0.11 0.67 -3095 KDM5B 1056888 10 10 10 0 4 2 3 1 0 0 0.11 0.67 -3096 PSAT1 phosphoserine aminotransferase 1 257376 4 4 4 0 1 2 1 0 0 0 0.11 0.67 -3097 CXorf1 chromosome X open reading frame 1 76160 1 1 1 0 1 0 0 0 0 0 0.11 0.67 -3098 ESYT3 560744 8 7 8 1 5 3 0 0 0 0 0.11 0.67 -3099 CRNN cornulin 335104 4 4 4 0 1 3 0 0 0 0 0.11 0.67 -3100 FAM167A 136612 3 3 3 1 1 1 1 0 0 0 0.11 0.67 -3101 C11orf66 chromosome 11 open reading frame 66 295176 4 4 4 2 2 1 0 0 1 0 0.11 0.67 -3102 SFT2D1 SFT2 domain containing 1 100296 2 2 2 1 1 0 0 0 1 0 0.11 0.67 -3103 ZPLD1 zona pellucida-like domain containing 1 300160 6 4 6 1 2 3 0 0 1 0 0.11 0.67 -3104 NSUN3 NOL1/NOP2/Sun domain family, member 3 234528 3 3 3 0 0 1 2 0 0 0 0.11 0.67 -3105 C20orf96 chromosome 20 open reading frame 96 245624 2 2 2 0 0 0 0 0 2 0 0.11 0.67 -3106 C9orf125 chromosome 9 open reading frame 125 272384 4 4 4 1 0 2 2 0 0 0 0.12 0.67 -3107 SUPT16H suppressor of Ty 16 homolog (S. cerevisiae) 727552 7 7 7 1 4 0 2 0 1 0 0.12 0.67 -3108 IL21R interleukin 21 receptor 329140 5 5 5 1 1 4 0 0 0 0 0.12 0.67 -3109 IGFBP4 insulin-like growth factor binding protein 4 105252 2 2 2 0 1 0 0 0 1 0 0.12 0.67 -3110 PAH phenylalanine hydroxylase 316064 4 4 4 2 0 1 2 0 1 0 0.12 0.67 -3111 PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 413056 6 6 6 0 3 2 1 0 0 0 0.12 0.67 -3112 GPRASP1 G protein-coupled receptor associated sorting protein 1 939008 10 7 10 0 0 4 4 0 2 0 0.12 0.67 -3113 CRHR2 corticotropin releasing hormone receptor 2 263064 6 6 6 2 4 2 0 0 0 0 0.12 0.67 -3114 GTDC1 glycosyltransferase-like domain containing 1 316512 4 4 4 0 1 2 1 0 0 0 0.12 0.67 -3115 FAM120B family with sequence similarity 120B 620256 8 7 8 3 4 3 0 0 1 0 0.12 0.67 -3116 RNF2 ring finger protein 2 231840 4 3 4 0 1 0 2 0 1 0 0.12 0.67 -3117 MMAA methylmalonic aciduria (cobalamin deficiency) cblA type 286944 5 4 4 2 3 1 0 0 1 0 0.12 0.67 -3118 SPATA13 spermatogenesis associated 13 450240 6 6 6 3 3 3 0 0 0 0 0.12 0.67 -3119 KIAA1045 KIAA1045 275744 5 5 5 3 2 2 1 0 0 0 0.12 0.67 -3120 MXRA5 matrix-remodelling associated 5 1887972 23 14 23 8 9 8 4 0 2 0 0.12 0.67 -3121 FER fer (fps/fes related) tyrosine kinase 569184 7 6 7 2 0 3 3 0 1 0 0.12 0.67 -3122 OR52D1 olfactory receptor, family 52, subfamily D, member 1 215264 5 4 5 0 0 4 1 0 0 0 0.12 0.67 -3123 BCAP29 B-cell receptor-associated protein 29 241696 3 3 3 0 1 0 1 0 1 0 0.12 0.67 -3124 MYCT1 myc target 1 160384 3 2 3 0 1 1 1 0 0 0 0.12 0.67 -3125 L2HGDH L-2-hydroxyglutarate dehydrogenase 308252 3 3 3 1 1 1 0 0 1 0 0.12 0.67 -3126 ZBTB41 zinc finger and BTB domain containing 41 620480 9 7 9 2 2 2 4 0 1 0 0.12 0.67 -3127 STX19 syntaxin 19 199136 2 2 2 0 0 0 1 0 1 0 0.12 0.67 -3128 EPHA1 EPH receptor A1 615696 6 6 6 5 3 1 1 0 1 0 0.12 0.67 -3129 BLVRB biliverdin reductase B (flavin reductase (NADPH)) 136204 2 2 2 1 1 1 0 0 0 0 0.12 0.67 -3130 CLEC4F C-type lectin domain family 4, member F 402752 5 4 5 0 1 2 0 0 2 0 0.12 0.67 -3131 CDCA8 cell division cycle associated 8 189560 3 3 3 0 2 0 0 0 1 0 0.12 0.67 -3132 IL22 interleukin 22 125440 2 2 2 0 1 1 0 0 0 0 0.12 0.67 -3133 RNF6 ring finger protein (C3H2C3 type) 6 463680 8 6 8 1 4 1 3 0 0 0 0.12 0.67 -3134 SLC28A3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 481152 4 4 4 1 0 1 1 0 2 0 0.12 0.67 -3135 FBXO10 F-box protein 10 628340 9 9 9 2 4 3 2 0 0 0 0.12 0.67 -3136 OR4A16 olfactory receptor, family 4, subfamily A, member 16 221984 3 3 3 1 0 2 1 0 0 0 0.12 0.67 -3137 PRR11 proline rich 11 250656 2 2 1 0 0 0 0 0 2 0 0.12 0.67 -3138 IL4 interleukin 4 107072 3 3 3 0 3 0 0 0 0 0 0.12 0.67 -3139 BTC betacellulin 109536 2 2 2 1 2 0 0 0 0 0 0.12 0.67 -3140 OR12D2 olfactory receptor, family 12, subfamily D, member 2 129920 3 3 3 0 1 2 0 0 0 0 0.12 0.67 -3141 GDF3 growth differentiation factor 3 243628 4 4 4 2 0 2 2 0 0 0 0.12 0.67 -3142 CCDC76 coiled-coil domain containing 76 333760 4 4 4 0 0 0 3 0 1 0 0.12 0.67 -3143 FOXG1 forkhead box G1 234380 7 6 7 2 4 2 0 0 1 0 0.12 0.67 -3144 MIF4GD MIF4G domain containing 178080 4 4 4 0 1 2 1 0 0 0 0.12 0.67 -3145 TMTC2 transmembrane and tetratricopeptide repeat containing 2 573080 7 6 7 1 1 2 2 1 1 0 0.12 0.67 -3146 OR6C70 olfactory receptor, family 6, subfamily C, member 70 211232 3 3 3 0 0 2 0 0 1 0 0.12 0.67 -3147 PRR5L 254548 4 4 4 1 3 1 0 0 0 0 0.12 0.67 -3148 NPR1 natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) 596352 6 6 6 2 3 1 0 0 2 0 0.12 0.67 -3149 VASP vasodilator-stimulated phosphoprotein 218348 3 3 3 0 0 0 1 0 2 0 0.12 0.67 -3150 FYN FYN oncogene related to SRC, FGR, YES 407232 5 5 5 1 1 2 0 0 2 0 0.12 0.67 -3151 NOM1 nucleolar protein with MIF4G domain 1 479112 7 5 7 2 1 1 4 0 1 0 0.12 0.67 -3152 KCNQ4 potassium voltage-gated channel, KQT-like subfamily, member 4 361876 6 6 6 2 2 3 0 0 1 0 0.12 0.67 -3153 MAGED1 melanoma antigen family D, 1 552832 6 6 6 4 1 4 0 0 1 0 0.12 0.67 -3154 NGRN neugrin, neurite outgrowth associated 191016 2 2 2 1 0 0 0 0 2 0 0.12 0.67 -3155 ZNF713 zinc finger protein 713 293216 3 3 3 1 1 0 2 0 0 0 0.12 0.68 -3156 LAYN layilin 238336 3 3 3 2 0 1 1 0 1 0 0.12 0.68 -3157 BBS4 Bardet-Biedl syndrome 4 359968 3 3 3 0 0 0 1 0 2 0 0.12 0.68 -3158 MAP3K13 mitogen-activated protein kinase kinase kinase 13 659288 9 8 9 4 4 2 1 0 2 0 0.12 0.68 -3159 C5orf51 202692 2 2 2 3 0 2 0 0 0 0 0.12 0.68 -3160 PCDHA9 protocadherin alpha 9 538608 12 11 12 2 8 4 0 0 0 0 0.12 0.68 -3161 CCDC137 coiled-coil domain containing 137 153228 3 3 3 2 2 0 0 0 1 0 0.12 0.68 -3162 NENF neuron derived neurotrophic factor 79296 2 2 2 0 0 2 0 0 0 0 0.12 0.68 -3163 PIGK phosphatidylinositol glycan anchor biosynthesis, class K 275968 4 4 4 0 2 1 0 0 1 0 0.12 0.68 -3164 ZNF534 zinc finger protein 534 227136 4 4 4 1 2 1 1 0 0 0 0.12 0.68 -3165 FAM26F family with sequence similarity 26, member F 108760 2 2 2 0 1 0 0 0 1 0 0.12 0.68 -3166 PADI6 peptidyl arginine deiminase, type VI 464240 7 6 7 2 6 0 1 0 0 0 0.12 0.68 -3167 GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 383040 3 3 3 0 0 0 2 0 1 0 0.12 0.68 -3168 GJA5 gap junction protein, alpha 5, 40kDa 242144 3 3 3 0 1 1 0 0 1 0 0.12 0.68 -3169 ELOVL2 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 205184 3 3 3 0 2 1 0 0 0 0 0.12 0.68 -3170 MUC15 mucin 15, cell surface associated 230048 4 4 4 1 0 2 2 0 0 0 0.12 0.68 -3171 DLG3 discs, large homolog 3 (neuroendocrine-dlg, Drosophila) 522544 8 6 7 1 3 1 1 0 3 0 0.12 0.68 -3172 COX6A2 cytochrome c oxidase subunit VIa polypeptide 2 36824 1 1 1 1 1 0 0 0 0 0 0.12 0.68 -3173 PPP3CC protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform 349896 4 4 4 1 2 0 0 0 2 0 0.12 0.68 -3174 HDLBP high density lipoprotein binding protein (vigilin) 876064 10 10 10 1 5 0 3 0 2 0 0.12 0.68 -3175 MYOCD myocardin 644896 7 5 7 5 1 2 1 0 3 0 0.12 0.68 -3176 DSC1 desmocollin 1 624736 8 7 8 0 1 3 2 0 2 0 0.12 0.68 -3177 OR5I1 olfactory receptor, family 5, subfamily I, member 1 212576 3 3 3 4 2 0 1 0 0 0 0.12 0.68 -3178 FAM154A family with sequence similarity 154, member A 322784 4 4 4 0 0 3 0 0 1 0 0.12 0.68 -3179 XKRX XK, Kell blood group complex subunit-related, X-linked 305088 4 4 4 0 1 3 0 0 0 0 0.12 0.68 -3180 C6orf167 chromosome 6 open reading frame 167 857472 9 8 9 2 1 4 4 0 0 0 0.12 0.68 -3181 PAN3 PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) 520680 7 6 6 1 2 3 1 0 1 0 0.12 0.68 -3182 SDF2 stromal cell-derived factor 2 145152 2 2 2 0 0 0 1 0 1 0 0.12 0.68 -3183 XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kDa) 511392 6 6 6 2 2 1 3 0 0 0 0.12 0.68 -3184 STX1B syntaxin 1B 203168 4 4 4 0 1 3 0 0 0 0 0.12 0.68 -3185 PLXDC1 plexin domain containing 1 324768 5 5 5 1 3 2 0 0 0 0 0.12 0.68 -3186 SIRPB2 signal-regulatory protein beta 2 234976 4 3 4 0 1 1 1 0 1 0 0.12 0.68 -3187 ATAD2 ATPase family, AAA domain containing 2 954128 9 7 9 3 1 1 3 0 4 0 0.12 0.68 -3188 PAIP2 poly(A) binding protein interacting protein 2 88704 1 1 1 1 0 1 0 0 0 0 0.12 0.68 -3189 SLFN5 schlafen family member 5 602588 7 6 7 0 3 2 1 0 1 0 0.12 0.68 -3190 BPIL2 bactericidal/permeability-increasing protein-like 2 354816 4 4 4 3 2 0 1 0 1 0 0.12 0.68 -3191 CLEC12A C-type lectin domain family 12, member A 184128 2 2 2 0 0 0 2 0 0 0 0.12 0.68 -3192 FCN1 ficolin (collagen/fibrinogen domain containing) 1 227808 6 5 6 1 2 3 1 0 0 0 0.12 0.68 -3193 CACNB2 calcium channel, voltage-dependent, beta 2 subunit 485552 6 6 5 2 5 1 0 0 0 0 0.12 0.68 -3194 CSK c-src tyrosine kinase 299708 4 4 4 0 2 1 0 0 1 0 0.12 0.68 -3195 VAMP5 vesicle-associated membrane protein 5 (myobrevin) 79744 2 2 2 1 2 0 0 0 0 0 0.12 0.68 -3196 USP10 ubiquitin specific peptidase 10 539280 6 6 6 2 1 2 1 1 1 0 0.12 0.68 -3197 ARMCX5 armadillo repeat containing, X-linked 5 376544 3 3 3 0 0 1 1 0 1 0 0.12 0.68 -3198 GJA9 gap junction protein, alpha 9, 59kDa 347648 4 4 4 0 1 1 2 0 0 0 0.12 0.68 -3199 HVCN1 hydrogen voltage-gated channel 1 189504 3 3 3 2 0 3 0 0 0 0 0.12 0.68 -3200 KAL1 Kallmann syndrome 1 sequence 434952 5 5 4 1 3 2 0 0 0 0 0.12 0.68 -3201 FGF5 fibroblast growth factor 5 183456 4 4 4 0 1 2 0 0 1 0 0.12 0.68 -3202 SEPHS1 selenophosphate synthetase 1 271264 3 3 2 0 2 0 1 0 0 0 0.12 0.68 -3203 RARG retinoic acid receptor, gamma 311752 5 5 5 1 3 2 0 0 0 0 0.12 0.68 -3204 POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 252560 3 3 3 1 1 0 1 0 1 0 0.12 0.68 -3205 GOSR1 golgi SNAP receptor complex member 1 176736 3 3 3 1 1 1 0 0 1 0 0.12 0.68 -3206 KCNK17 potassium channel, subfamily K, member 17 183792 3 3 3 0 3 0 0 0 0 0 0.12 0.68 -3207 LEF1 lymphoid enhancer-binding factor 1 296212 4 4 4 0 2 1 1 0 0 0 0.12 0.68 -3208 PRAMEF1 PRAME family member 1 321888 4 4 4 2 1 2 1 0 0 0 0.12 0.68 -3209 NOX3 NADPH oxidase 3 394016 8 6 8 3 3 1 4 0 0 0 0.12 0.68 -3210 TMEM117 transmembrane protein 117 352352 4 4 4 0 1 2 1 0 0 0 0.12 0.68 -3211 LDHC lactate dehydrogenase C 230048 2 2 2 1 1 1 0 0 0 0 0.12 0.68 -3212 TSGA14 testis specific, 14 261184 4 4 4 0 0 2 2 0 0 0 0.12 0.68 -3213 CPVL carboxypeptidase, vitellogenic-like 331296 4 4 4 0 0 2 1 0 1 0 0.12 0.68 -3214 TAS2R9 taste receptor, type 2, member 9 211232 3 3 3 1 0 2 1 0 0 0 0.12 0.68 -3215 MT1G metallothionein 1G 44352 1 1 1 0 0 1 0 0 0 0 0.12 0.68 -3216 ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 707484 10 10 10 2 6 2 2 0 0 0 0.12 0.68 -3217 TMEM132E transmembrane protein 132E 562688 8 8 8 2 2 4 1 0 1 0 0.12 0.68 -3218 SPAM1 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) 350248 4 4 4 1 1 1 1 1 0 0 0.12 0.68 -3219 ASPA aspartoacylase (Canavan disease) 216384 5 4 5 1 2 1 2 0 0 0 0.12 0.68 -3220 PRM2 protamine 2 71008 2 2 2 0 1 1 0 0 0 0 0.12 0.68 -3221 CLOCK clock homolog (mouse) 587104 8 6 8 1 1 3 3 0 1 0 0.12 0.68 -3222 PAK1 p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast) 391328 5 5 5 1 0 2 1 1 1 0 0.12 0.68 -3223 CCL7 chemokine (C-C motif) ligand 7 69888 1 1 1 1 1 0 0 0 0 0 0.12 0.69 -3224 LCE1B late cornified envelope 1B 80864 1 1 1 2 0 1 0 0 0 0 0.12 0.69 -3225 FAM108B1 family with sequence similarity 108, member B1 203840 2 2 2 0 0 1 1 0 0 0 0.12 0.69 -3226 ZNF423 zinc finger protein 423 840700 15 11 15 3 7 6 2 0 0 0 0.12 0.69 -3227 SPATA4 spermatogenesis associated 4 211008 6 4 6 1 1 4 1 0 0 0 0.12 0.69 -3228 TBX22 T-box 22 353880 4 4 4 6 2 0 1 0 1 0 0.12 0.69 -3229 SEPT3 septin 3 259336 5 4 5 0 1 1 1 0 2 0 0.12 0.69 -3230 ZNF354A zinc finger protein 354A 408660 7 5 7 0 1 5 0 0 1 0 0.12 0.69 -3231 EEA1 early endosome antigen 1 974848 10 6 10 1 0 4 3 0 1 2 0.12 0.69 -3232 CDR1 cerebellar degeneration-related protein 1, 34kDa 177632 2 2 2 1 2 0 0 0 0 0 0.12 0.69 -3233 CLEC4M C-type lectin domain family 4, member M 277312 3 3 3 4 1 1 0 1 0 0 0.12 0.69 -3234 WDR33 WD repeat domain 33 931112 9 7 9 0 3 0 2 0 4 0 0.12 0.69 -3235 ABHD14B abhydrolase domain containing 14B 129108 2 2 2 0 2 0 0 0 0 0 0.12 0.69 -3236 OR7G2 olfactory receptor, family 7, subfamily G, member 2 233408 3 3 3 1 0 2 0 0 1 0 0.12 0.69 -3237 SLCO1A2 solute carrier organic anion transporter family, member 1A2 463456 5 4 5 2 1 2 2 0 0 0 0.12 0.69 -3238 TAF9B TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa 68992 1 1 1 1 0 0 1 0 0 0 0.12 0.69 -3239 TTL tubulin tyrosine ligase 251520 3 3 3 0 0 2 0 0 1 0 0.12 0.69 -3240 HEPN1 60704 1 1 1 0 1 0 0 0 0 0 0.12 0.69 -3241 RAB3D RAB3D, member RAS oncogene family 151424 3 3 3 0 2 1 0 0 0 0 0.12 0.69 -3242 DNAJB13 DnaJ (Hsp40) related, subfamily B, member 13 220192 3 3 3 0 0 2 0 0 1 0 0.12 0.69 -3243 EME1 essential meiotic endonuclease 1 homolog 1 (S. pombe) 391188 4 4 4 0 0 2 1 0 1 0 0.12 0.69 -3244 TAAR1 trace amine associated receptor 1 229376 4 4 4 0 1 2 1 0 0 0 0.12 0.69 -3245 ECHS1 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial 170268 2 2 2 0 0 0 0 0 2 0 0.12 0.69 -3246 MCEE methylmalonyl CoA epimerase 116076 2 2 2 0 0 2 0 0 0 0 0.12 0.69 -3247 CLPS colipase, pancreatic 78624 2 2 2 0 2 0 0 0 0 0 0.12 0.69 -3248 ANAPC7 anaphase promoting complex subunit 7 403580 4 4 4 2 1 0 2 0 1 0 0.12 0.69 -3249 HOXA6 homeobox A6 159040 5 5 5 0 4 0 0 0 1 0 0.12 0.69 -3250 SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 372992 6 5 6 1 0 2 3 0 1 0 0.12 0.69 -3251 TTC33 tetratricopeptide repeat domain 33 180320 1 1 1 0 0 0 0 0 1 0 0.12 0.69 -3252 UBXN11 344776 7 5 5 1 2 1 0 0 0 4 0.12 0.69 -3253 FBXO32 F-box protein 32 247296 5 5 5 0 2 2 1 0 0 0 0.12 0.69 -3254 TMSB15A 32704 1 1 1 0 0 0 1 0 0 0 0.12 0.69 -3255 SURF6 surfeit 6 232288 5 5 5 0 3 1 0 0 1 0 0.12 0.69 -3256 PCYT1B phosphate cytidylyltransferase 1, choline, beta 278424 5 5 5 0 3 1 1 0 0 0 0.12 0.69 -3257 POLR3E polymerase (RNA) III (DNA directed) polypeptide E (80kD) 489212 6 6 6 1 3 1 0 0 2 0 0.12 0.69 -3258 LRRC8A leucine rich repeat containing 8 family, member A 519316 7 7 7 2 2 3 0 1 1 0 0.12 0.69 -3259 SETD5 SET domain containing 5 969608 9 7 9 1 3 0 3 0 3 0 0.12 0.69 -3260 EMR1 egf-like module containing, mucin-like, hormone receptor-like 1 614880 9 6 9 1 1 5 2 0 1 0 0.12 0.69 -3261 FA2H fatty acid 2-hydroxylase 187512 3 3 3 1 1 2 0 0 0 0 0.12 0.69 -3262 OR4K1 olfactory receptor, family 4, subfamily K, member 1 210560 4 3 4 2 0 2 2 0 0 0 0.12 0.69 -3263 LDB1 LIM domain binding 1 263872 5 5 5 0 3 1 0 0 1 0 0.12 0.69 -3264 SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila) 239456 3 3 3 0 1 1 1 0 0 0 0.12 0.69 -3265 PGBD5 piggyBac transposable element derived 5 312704 5 5 5 3 5 0 0 0 0 0 0.12 0.69 -3266 NCKAP1 NCK-associated protein 1 791256 9 8 9 1 3 2 3 0 1 0 0.12 0.69 -3267 TSSK4 testis-specific serine kinase 4 226912 3 3 3 0 0 2 0 0 1 0 0.12 0.69 -3268 WDR78 WD repeat domain 78 588000 5 5 5 1 1 1 2 0 1 0 0.12 0.69 -3269 RBP1 retinol binding protein 1, cellular 112124 2 2 2 0 0 2 0 0 0 0 0.12 0.69 -3270 IL17C interleukin 17C 96012 1 1 1 0 0 0 0 0 1 0 0.13 0.69 -3271 TTC29 tetratricopeptide repeat domain 29 324696 6 4 6 0 1 5 0 0 0 0 0.13 0.69 -3272 CYSLTR1 cysteinyl leukotriene receptor 1 228032 3 3 3 1 0 1 2 0 0 0 0.13 0.69 -3273 PCDH19 protocadherin 19 728924 12 10 12 3 8 2 1 0 1 0 0.13 0.69 -3274 HERC4 hect domain and RLD 4 732480 6 6 6 0 2 0 2 0 2 0 0.13 0.69 -3275 C2orf3 chromosome 2 open reading frame 3 490420 5 5 5 1 2 1 1 0 1 0 0.13 0.69 -3276 PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha 598304 7 6 7 1 2 3 1 0 1 0 0.13 0.69 -3277 DEFB128 defensin, beta 128 64960 1 1 1 0 0 0 1 0 0 0 0.13 0.69 -3278 BAG1 BCL2-associated athanogene 205044 2 2 2 1 0 0 1 0 1 0 0.13 0.69 -3279 TRAT1 T cell receptor associated transmembrane adaptor 1 131040 2 2 2 0 1 1 0 0 0 0 0.13 0.69 -3280 C6orf153 chromosome 6 open reading frame 153 152376 2 2 2 1 0 1 1 0 0 0 0.13 0.69 -3281 NDUFA4 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa 58688 2 2 2 0 0 2 0 0 0 0 0.13 0.69 -3282 C3 complement component 3 1154860 13 11 13 6 4 4 1 0 2 2 0.13 0.69 -3283 PLAG1 pleiomorphic adenoma gene 1 338464 6 5 6 1 1 2 3 0 0 0 0.13 0.69 -3284 UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 959696 12 6 11 1 3 2 2 0 3 2 0.13 0.69 -3285 VAMP4 vesicle-associated membrane protein 4 101696 3 2 3 1 0 2 0 0 1 0 0.13 0.69 -3286 ZNF354B zinc finger protein 354B 413284 6 6 6 1 0 5 0 0 1 0 0.13 0.69 -3287 TXNDC12 thioredoxin domain containing 12 (endoplasmic reticulum) 122528 2 2 2 0 1 1 0 0 0 0 0.13 0.69 -3288 NOBOX NOBOX oogenesis homeobox 214736 5 3 5 0 3 1 0 0 1 0 0.13 0.69 -3289 HECTD2 HECT domain containing 2 514528 7 6 7 2 1 3 1 0 0 2 0.13 0.69 -3290 KCNJ15 potassium inwardly-rectifying channel, subfamily J, member 15 253568 4 4 4 0 1 2 1 0 0 0 0.13 0.69 -3291 GOLGA5 golgi autoantigen, golgin subfamily a, 5 502656 8 5 8 1 4 2 2 0 0 0 0.13 0.69 -3292 PIK3C2G phosphoinositide-3-kinase, class 2, gamma polypeptide 989696 9 7 9 1 1 3 2 0 3 0 0.13 0.69 -3293 ZDHHC14 zinc finger, DHHC-type containing 14 160640 3 3 3 2 1 0 2 0 0 0 0.13 0.69 -3294 OR6S1 olfactory receptor, family 6, subfamily S, member 1 224000 3 3 3 0 2 0 0 0 1 0 0.13 0.69 -3295 OR52E8 olfactory receptor, family 52, subfamily E, member 8 214592 3 3 3 0 0 3 0 0 0 0 0.13 0.69 -3296 WSCD1 WSC domain containing 1 339612 7 6 7 3 3 2 1 0 1 0 0.13 0.69 -3297 HTR3A 5-hydroxytryptamine (serotonin) receptor 3A 349104 6 6 6 2 5 1 0 0 0 0 0.13 0.69 -3298 UGT2B17 UDP glucuronosyltransferase 2 family, polypeptide B17 362208 7 5 7 0 1 3 2 0 1 0 0.13 0.69 -3299 CACNA1S calcium channel, voltage-dependent, L type, alpha 1S subunit 1293040 15 13 15 4 9 3 3 0 0 0 0.13 0.69 -3300 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 99456 1 1 1 0 0 0 0 0 1 0 0.13 0.69 -3301 OR2T4 olfactory receptor, family 2, subfamily T, member 4 235424 3 3 3 0 0 2 1 0 0 0 0.13 0.69 -3302 FGD1 FYVE, RhoGEF and PH domain containing 1 (faciogenital dysplasia) 571856 8 7 8 2 3 5 0 0 0 0 0.13 0.69 -3303 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 213696 3 3 3 1 1 0 2 0 0 0 0.13 0.69 -3304 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta 179508 2 2 2 0 1 1 0 0 0 0 0.13 0.69 -3305 ERN2 endoplasmic reticulum to nucleus signaling 2 656316 10 9 10 1 4 5 1 0 0 0 0.13 0.69 -3306 TAC1 tachykinin, precursor 1 92736 2 2 2 2 1 0 1 0 0 0 0.13 0.69 -3307 ZNF609 zinc finger protein 609 956032 8 8 8 2 4 1 1 0 2 0 0.13 0.69 -3308 TIPARP TCDD-inducible poly(ADP-ribose) polymerase 446656 7 5 7 0 2 3 1 0 1 0 0.13 0.69 -3309 RLF rearranged L-myc fusion 1278792 15 10 15 3 3 5 5 0 2 0 0.13 0.69 -3310 ANKRD12 ankyrin repeat domain 12 1396332 16 11 16 4 3 7 3 0 3 0 0.13 0.69 -3311 ADAT2 adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae) 134400 3 3 3 0 2 1 0 0 0 0 0.13 0.69 -3312 KDM3B 1159648 14 9 13 1 2 3 5 0 2 2 0.13 0.69 -3313 SIAH2 seven in absentia homolog 2 (Drosophila) 172452 5 4 5 1 3 0 2 0 0 0 0.13 0.69 -3314 C22orf42 159936 2 2 2 0 0 2 0 0 0 0 0.13 0.69 -3315 SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 285824 5 5 5 2 0 5 0 0 0 0 0.13 0.69 -3316 OSTalpha 227808 3 3 3 0 2 0 0 0 1 0 0.13 0.69 -3317 HCFC1R1 host cell factor C1 regulator 1 (XPO1 dependent) 78588 1 1 1 0 0 0 0 0 1 0 0.13 0.69 -3318 ZNF260 zinc finger protein 260 278432 3 3 3 0 0 0 3 0 0 0 0.13 0.69 -3319 PCDHGA6 protocadherin gamma subfamily A, 6 617120 9 9 9 1 6 0 2 0 1 0 0.13 0.69 -3320 SERPINI2 serpin peptidase inhibitor, clade I (pancpin), member 2 280000 4 4 4 2 0 3 1 0 0 0 0.13 0.69 -3321 AMICA1 adhesion molecule, interacts with CXADR antigen 1 277312 4 4 4 1 1 2 1 0 0 0 0.13 0.69 -3322 MCHR1 melanin-concentrating hormone receptor 1 271600 6 5 6 1 4 2 0 0 0 0 0.13 0.69 -3323 APOH apolipoprotein H (beta-2-glycoprotein I) 239680 3 3 3 2 1 0 0 0 2 0 0.13 0.69 -3324 RIMS4 regulating synaptic membrane exocytosis 4 180236 4 4 4 1 2 1 0 1 0 0 0.13 0.69 -3325 TRIM40 tripartite motif-containing 40 121324 2 2 2 0 1 1 0 0 0 0 0.13 0.69 -3326 CEACAM21 carcinoembryonic antigen-related cell adhesion molecule 21 201312 3 3 3 0 0 2 0 0 1 0 0.13 0.69 -3327 ADAM11 ADAM metallopeptidase domain 11 477044 6 6 6 0 4 0 1 0 1 0 0.13 0.69 -3328 KIAA0564 KIAA0564 1267776 13 9 13 6 4 2 2 0 1 4 0.13 0.69 -3329 C1orf94 chromosome 1 open reading frame 94 282464 3 3 3 2 1 1 0 0 1 0 0.13 0.69 -3330 GAB1 GRB2-associated binding protein 1 487536 6 6 6 1 1 4 0 0 1 0 0.13 0.69 -3331 ACTL6A actin-like 6A 301504 5 4 5 0 1 1 1 1 1 0 0.13 0.69 -3332 SPATA1 spermatogenesis associated 1 272760 4 3 4 0 0 2 0 0 0 2 0.13 0.69 -3333 LRRTM1 leucine rich repeat transmembrane neuronal 1 317408 6 6 6 1 3 3 0 0 0 0 0.13 0.69 -3334 LCE4A late cornified envelope 4A 68096 1 1 1 0 0 0 1 0 0 0 0.13 0.69 -3335 C6orf165 chromosome 6 open reading frame 165 429408 7 5 7 1 1 3 2 0 1 0 0.13 0.69 -3336 MBD5 methyl-CpG binding domain protein 5 1013600 11 9 11 5 2 4 3 0 2 0 0.13 0.69 -3337 LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) 276864 4 4 4 1 1 1 2 0 0 0 0.13 0.69 -3338 KIAA0368 KIAA0368 1310292 13 10 13 1 3 1 6 0 3 0 0.13 0.69 -3339 OR2L8 olfactory receptor, family 2, subfamily L, member 8 211232 3 3 3 0 0 3 0 0 0 0 0.13 0.69 -3340 IRX6 iroquois homeobox 6 279468 4 4 4 2 1 2 0 0 1 0 0.13 0.70 -3341 OR14I1 olfactory receptor, family 14, subfamily I, member 1 210560 2 2 2 0 1 0 0 0 1 0 0.13 0.70 -3342 FCHSD2 FCH and double SH3 domains 2 450248 8 5 8 3 1 3 3 0 1 0 0.13 0.70 -3343 PLCL1 phospholipase C-like 1 687232 8 6 8 6 3 2 0 0 3 0 0.13 0.70 -3344 PCDHB4 protocadherin beta 4 495656 7 7 7 5 3 0 3 0 1 0 0.13 0.70 -3345 C9orf93 chromosome 9 open reading frame 93 914144 9 7 9 1 1 4 0 0 4 0 0.13 0.70 -3346 ACCN5 amiloride-sensitive cation channel 5, intestinal 348992 6 5 6 1 2 3 1 0 0 0 0.13 0.70 -3347 GPR50 G protein-coupled receptor 50 417088 5 5 5 0 2 3 0 0 0 0 0.13 0.70 -3348 GABPB1 GA binding protein transcription factor, beta subunit 1 284032 5 4 5 0 2 2 0 0 1 0 0.13 0.70 -3349 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 299936 2 2 2 0 1 0 0 0 1 0 0.13 0.70 -3350 C4orf43 137376 2 2 2 0 0 1 0 0 1 0 0.13 0.70 -3351 PER3 period homolog 3 (Drosophila) 812032 9 8 8 0 3 3 1 1 1 0 0.13 0.70 -3352 NDFIP1 Nedd4 family interacting protein 1 140448 2 2 2 1 0 0 1 0 1 0 0.13 0.70 -3353 ZNF20 zinc finger protein 20 361760 5 4 5 0 0 3 1 0 1 0 0.13 0.70 -3354 GTF2IRD1 GTF2I repeat domain containing 1 649348 9 8 9 0 6 2 1 0 0 0 0.13 0.70 -3355 GAN giant axonal neuropathy (gigaxonin) 393988 5 5 4 3 1 0 1 0 3 0 0.13 0.70 -3356 IL13RA2 interleukin 13 receptor, alpha 2 264096 3 3 3 3 1 0 2 0 0 0 0.13 0.70 -3357 PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 658112 8 6 8 3 4 2 1 0 1 0 0.13 0.70 -3358 GTF2E1 general transcription factor IIE, polypeptide 1, alpha 56kDa 299264 5 4 5 1 1 3 1 0 0 0 0.13 0.70 -3359 TNIP2 TNFAIP3 interacting protein 2 234976 4 4 3 0 3 1 0 0 0 0 0.13 0.70 -3360 TNFRSF17 tumor necrosis factor receptor superfamily, member 17 127008 2 2 2 1 1 0 1 0 0 0 0.13 0.70 -3361 PAPL 305760 5 5 5 1 3 1 0 0 1 0 0.13 0.70 -3362 UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 90272 2 2 2 0 0 0 2 0 0 0 0.13 0.70 -3363 TG thyroglobulin 1903524 22 15 22 12 6 9 5 0 2 0 0.13 0.70 -3364 PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 183232 2 2 2 0 1 0 0 0 1 0 0.13 0.70 -3365 RRM2 ribonucleotide reductase M2 polypeptide 230272 3 3 3 0 0 0 2 0 1 0 0.13 0.70 -3366 LIN7A lin-7 homolog A (C. elegans) 154504 2 2 2 0 1 1 0 0 0 0 0.13 0.70 -3367 ETAA1 Ewing tumor-associated antigen 1 599200 8 6 8 1 0 3 4 0 1 0 0.13 0.70 -3368 CXCL14 chemokine (C-X-C motif) ligand 14 55552 2 2 2 0 2 0 0 0 0 0 0.13 0.70 -3369 TAS1R2 taste receptor, type 1, member 2 569856 8 8 7 3 5 2 1 0 0 0 0.13 0.70 -3370 KPNA1 karyopherin alpha 1 (importin alpha 5) 373856 6 5 6 0 5 0 1 0 0 0 0.13 0.70 -3371 VRK1 vaccinia related kinase 1 277536 4 4 4 1 1 2 1 0 0 0 0.13 0.70 -3372 ZNF75D 347872 4 4 4 1 0 2 2 0 0 0 0.13 0.70 -3373 MYL1 myosin, light chain 1, alkali; skeletal, fast 140452 2 2 2 2 0 1 1 0 0 0 0.13 0.70 -3374 HECW2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 1082144 15 11 15 7 9 2 2 0 0 2 0.13 0.70 -3375 ABCC12 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 939904 11 9 11 4 4 4 1 0 2 0 0.13 0.70 -3376 TRAF5 TNF receptor-associated factor 5 383936 6 5 6 2 2 2 1 1 0 0 0.13 0.70 -3377 SPRR1A small proline-rich protein 1A 61376 1 1 1 0 0 0 1 0 0 0 0.13 0.70 -3378 GSTZ1 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 151216 2 2 2 0 0 0 1 0 1 0 0.13 0.70 -3379 FAM71F1 family with sequence similarity 71, member F1 238112 3 3 3 1 1 1 1 0 0 0 0.13 0.70 -3380 THRB thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) 317632 4 4 4 0 0 2 2 0 0 0 0.13 0.70 -3381 FOXK1 forkhead box K1 332556 6 6 5 3 4 1 1 0 0 0 0.13 0.70 -3382 RIMS3 regulating synaptic membrane exocytosis 3 212752 4 4 4 1 3 1 0 0 0 0 0.13 0.70 -3383 ADM adrenomedullin 117096 2 2 2 0 0 0 1 0 1 0 0.13 0.70 -3384 ZNF275 zinc finger protein 275 212880 4 4 4 1 1 1 2 0 0 0 0.13 0.70 -3385 ELTD1 EGF, latrophilin and seven transmembrane domain containing 1 474256 7 6 7 3 2 4 1 0 0 0 0.13 0.70 -3386 SLC17A4 solute carrier family 17 (sodium phosphate), member 4 344512 3 3 3 0 0 3 0 0 0 0 0.13 0.70 -3387 NRSN1 neurensin 1 133504 2 2 2 0 0 0 1 0 1 0 0.13 0.70 -3388 DIS3L DIS3 mitotic control homolog (S. cerevisiae)-like 669760 9 8 9 1 4 3 2 0 0 0 0.13 0.70 -3389 MFSD2B 309728 5 5 5 0 5 0 0 0 0 0 0.13 0.70 -3390 SLC22A25 solute carrier family 22, member 25 376320 5 4 5 2 0 4 0 0 1 0 0.13 0.70 -3391 LGR4 leucine-rich repeat-containing G protein-coupled receptor 4 613536 9 6 9 2 1 5 1 0 2 0 0.13 0.70 -3392 SGOL2 shugoshin-like 2 (S. pombe) 848260 7 6 7 0 0 0 5 0 2 0 0.13 0.70 -3393 ACOX3 acyl-Coenzyme A oxidase 3, pristanoyl 446208 7 7 7 2 3 2 1 0 1 0 0.13 0.70 -3394 NID1 nidogen 1 824140 13 12 13 9 8 2 3 0 0 0 0.13 0.70 -3395 FBXO27 F-box protein 27 149996 3 3 3 4 2 1 0 0 0 0 0.13 0.70 -3396 ADCK1 aarF domain containing kinase 1 361088 6 5 6 0 1 2 2 0 1 0 0.13 0.70 -3397 PIP prolactin-induced protein 102368 2 2 2 2 1 0 0 0 1 0 0.13 0.70 -3398 GIMAP7 GTPase, IMAP family member 7 203168 4 3 4 0 2 1 0 0 1 0 0.13 0.70 -3399 RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) 478688 7 6 7 2 4 3 0 0 0 0 0.13 0.70 -3400 PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta 54880 1 1 1 2 1 0 0 0 0 0 0.13 0.70 -3401 MOBKL1A MOB1, Mps One Binder kinase activator-like 1A (yeast) 147168 2 2 2 1 0 2 0 0 0 0 0.13 0.70 -3402 SCARB2 scavenger receptor class B, member 2 332640 4 4 4 2 3 0 1 0 0 0 0.13 0.70 -3403 SPZ1 spermatogenic leucine zipper 1 290528 4 4 4 0 1 2 0 0 1 0 0.13 0.70 -3404 SIDT2 SID1 transmembrane family, member 2 577108 8 7 8 1 3 3 2 0 0 0 0.13 0.70 -3405 KRT74 keratin 74 364224 5 5 5 2 2 2 1 0 0 0 0.13 0.70 -3406 CENPF centromere protein F, 350/400ka (mitosin) 2110304 26 14 26 8 2 12 9 0 3 0 0.13 0.70 -3407 DGKH diacylglycerol kinase, eta 825132 10 8 10 1 8 0 2 0 0 0 0.13 0.70 -3408 RNASE7 ribonuclease, RNase A family, 7 106400 2 2 2 0 1 0 1 0 0 0 0.13 0.70 -3409 MEAF6 135016 3 3 3 0 0 3 0 0 0 0 0.13 0.70 -3410 GAGE10 G antigen 10 64680 1 1 1 0 0 1 0 0 0 0 0.13 0.70 -3411 SYN1 synapsin I 276264 5 5 5 1 2 1 2 0 0 0 0.13 0.70 -3412 KIAA1632 KIAA1632 1768312 19 13 18 3 5 6 5 0 3 0 0.13 0.70 -3413 RGS18 regulator of G-protein signaling 18 163072 2 2 2 0 0 1 1 0 0 0 0.13 0.70 -3414 PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 614432 9 9 9 2 3 2 2 0 2 0 0.13 0.70 -3415 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 97440 2 2 2 0 0 1 0 0 1 0 0.13 0.70 -3416 LUZP1 leucine zipper protein 1 725536 6 6 6 2 2 0 3 0 1 0 0.13 0.70 -3417 CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 338016 4 4 4 1 2 1 1 0 0 0 0.13 0.70 -3418 ZNF530 zinc finger protein 530 400792 5 5 5 4 0 0 3 0 2 0 0.13 0.70 -3419 SLC35D2 solute carrier family 35, member D2 201600 3 3 3 0 1 2 0 0 0 0 0.13 0.70 -3420 ZNF212 zinc finger protein 212 327824 5 4 5 0 1 1 2 0 1 0 0.13 0.70 -3421 C11orf40 chromosome 11 open reading frame 40 138384 2 2 2 1 0 1 1 0 0 0 0.13 0.70 -3422 DNTT deoxynucleotidyltransferase, terminal 352576 7 5 7 1 1 5 1 0 0 0 0.13 0.70 -3423 KIAA1267 KIAA1267 755776 8 8 8 0 3 4 0 0 1 0 0.13 0.70 -3424 CCDC123 coiled-coil domain containing 123 543736 5 5 5 0 3 1 0 0 1 0 0.13 0.70 -3425 ADAM15 ADAM metallopeptidase domain 15 569828 7 7 7 1 3 2 1 0 1 0 0.13 0.70 -3426 KPNA5 karyopherin alpha 5 (importin alpha 6) 375424 4 3 4 1 0 2 2 0 0 0 0.13 0.70 -3427 ABCC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 952640 11 10 11 1 4 4 2 0 1 0 0.13 0.71 -3428 ODC1 ornithine decarboxylase 1 319424 5 5 5 2 2 2 0 0 1 0 0.13 0.71 -3429 PDZRN3 PDZ domain containing RING finger 3 586012 9 8 9 3 6 0 1 0 2 0 0.13 0.71 -3430 DDX6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 336000 4 4 4 0 1 0 2 0 1 0 0.13 0.71 -3431 SLC25A18 solute carrier family 25 (mitochondrial carrier), member 18 213888 3 3 3 1 1 0 1 1 0 0 0.13 0.71 -3432 CNPY2 canopy 2 homolog (zebrafish) 127456 2 2 2 0 0 1 1 0 0 0 0.13 0.71 -3433 GRIP1 glutamate receptor interacting protein 1 745248 8 7 8 2 2 3 2 0 1 0 0.13 0.71 -3434 TBC1D23 TBC1 domain family, member 23 476448 5 5 5 1 1 2 0 0 2 0 0.13 0.71 -3435 RAB25 RAB25, member RAS oncogene family 148288 2 2 2 0 0 2 0 0 0 0 0.13 0.71 -3436 DHODH dihydroorotate dehydrogenase 254456 4 4 4 0 2 1 1 0 0 0 0.13 0.71 -3437 HAO2 hydroxyacid oxidase 2 (long chain) 242816 4 3 4 0 0 2 1 0 1 0 0.13 0.71 -3438 SLC18A3 solute carrier family 18 (vesicular acetylcholine), member 3 340572 6 6 6 2 4 1 1 0 0 0 0.13 0.71 -3439 ZXDA zinc finger, X-linked, duplicated A 394868 5 5 5 2 0 2 2 0 1 0 0.13 0.71 -3440 GPR37 G protein-coupled receptor 37 (endothelin receptor type B-like) 385924 7 7 7 1 4 3 0 0 0 0 0.14 0.71 -3441 POMP proteasome maturation protein 99848 1 1 1 0 0 1 0 0 0 0 0.14 0.71 -3442 CMYA5 cardiomyopathy associated 5 2694752 28 15 28 9 2 11 10 0 5 0 0.14 0.71 -3443 CD47 CD47 molecule 209664 3 3 3 0 0 0 3 0 0 0 0.14 0.71 -3444 LAD1 ladinin 1 346472 5 5 5 0 2 2 0 0 1 0 0.14 0.71 -3445 MYBL1 v-myb myeloblastosis viral oncogene homolog (avian)-like 1 484992 6 5 6 1 1 3 1 0 1 0 0.14 0.71 -3446 MGST3 microsomal glutathione S-transferase 3 107296 1 1 1 0 0 0 0 0 1 0 0.14 0.71 -3447 OR1J1 olfactory receptor, family 1, subfamily J, member 1 217952 3 3 3 1 1 1 1 0 0 0 0.14 0.71 -3448 MRPL22 mitochondrial ribosomal protein L22 145376 2 2 2 0 0 0 2 0 0 0 0.14 0.71 -3449 SOX21 SRY (sex determining region Y)-box 21 76356 2 2 2 1 1 1 0 0 0 0 0.14 0.71 -3450 SPANXC SPANX family, member C 67648 2 1 2 0 0 1 1 0 0 0 0.14 0.71 -3451 IFT88 intraflagellar transport 88 homolog (Chlamydomonas) 580208 5 5 5 0 2 1 1 0 1 0 0.14 0.71 -3452 VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae) 2219304 26 15 26 2 4 13 8 0 1 0 0.14 0.71 -3453 C1orf52 chromosome 1 open reading frame 52 123936 3 3 3 1 1 1 1 0 0 0 0.14 0.71 -3454 ARL11 ADP-ribosylation factor-like 11 125048 2 2 2 2 1 0 0 0 1 0 0.14 0.71 -3455 ERMP1 endoplasmic reticulum metallopeptidase 1 563472 6 6 6 3 0 3 3 0 0 0 0.14 0.71 -3456 CUL5 cullin 5 541856 5 5 5 2 2 2 0 0 1 0 0.14 0.71 -3457 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 622916 10 9 10 1 6 2 2 0 0 0 0.14 0.71 -3458 CNTROB centrobin, centrosomal BRCA2 interacting protein 639296 7 7 7 1 4 2 0 0 1 0 0.14 0.71 -3459 PIWIL1 piwi-like 1 (Drosophila) 597184 8 6 8 0 2 2 2 0 2 0 0.14 0.71 -3460 CARD11 caspase recruitment domain family, member 11 770404 9 9 8 4 7 1 1 0 0 0 0.14 0.71 -3461 ARHGEF38 151424 1 1 1 0 0 0 0 0 1 0 0.14 0.71 -3462 ERO1LB ERO1-like beta (S. cerevisiae) 305088 7 4 7 0 2 3 1 0 1 0 0.14 0.71 -3463 KIAA1539 KIAA1539 340216 4 4 4 1 2 1 1 0 0 0 0.14 0.71 -3464 GJC1 gap junction protein, gamma 1, 45kDa 267680 4 4 4 1 3 0 0 0 1 0 0.14 0.71 -3465 OR51I1 olfactory receptor, family 51, subfamily I, member 1 212576 5 3 5 1 0 3 2 0 0 0 0.14 0.71 -3466 PNMA5 paraneoplastic antigen like 5 299180 4 4 4 2 0 2 1 0 1 0 0.14 0.71 -3467 KRTAP5-2 keratin associated protein 5-2 120512 1 1 1 0 0 0 0 0 1 0 0.14 0.71 -3468 C10orf88 chromosome 10 open reading frame 88 273336 3 3 3 0 0 2 0 0 1 0 0.14 0.71 -3469 LELP1 late cornified envelope-like proline-rich 1 67424 1 1 1 1 1 0 0 0 0 0 0.14 0.71 -3470 PIWIL4 piwi-like 4 (Drosophila) 590320 8 7 8 1 4 1 3 0 0 0 0.14 0.71 -3471 RBM39 RNA binding motif protein 39 371168 6 5 6 0 0 2 3 0 1 0 0.14 0.71 -3472 LIAS lipoic acid synthetase 260512 4 4 4 0 0 2 1 0 1 0 0.14 0.71 -3473 GBP6 guanylate binding protein family, member 6 435008 7 5 7 0 3 2 1 0 1 0 0.14 0.71 -3474 C15orf41 chromosome 15 open reading frame 41 189976 2 2 2 1 0 1 1 0 0 0 0.14 0.71 -3475 MRGPRX4 MAS-related GPR, member X4 217952 3 3 3 0 1 0 1 0 1 0 0.14 0.71 -3476 LRRN1 leucine rich repeat neuronal 1 482720 6 6 6 0 3 1 2 0 0 0 0.14 0.71 -3477 MGST1 microsomal glutathione S-transferase 1 107520 2 2 2 0 0 1 1 0 0 0 0.14 0.71 -3478 CD63 CD63 molecule 163268 3 3 3 0 1 1 1 0 0 0 0.14 0.71 -3479 BRD7 bromodomain containing 7 454048 4 4 4 0 1 1 1 0 1 0 0.14 0.71 -3480 KIAA1958 KIAA1958 484512 6 6 6 3 4 2 0 0 0 0 0.14 0.71 -3481 ZNF831 zinc finger protein 831 1007500 11 9 10 4 1 5 1 1 3 0 0.14 0.71 -3482 NUP205 nucleoporin 205kDa 1391264 13 10 13 4 1 6 3 0 0 3 0.14 0.71 -3483 KIF25 kinesin family member 25 239840 3 3 3 2 2 0 0 0 1 0 0.14 0.71 -3484 ZNF763 zinc finger protein 763 271040 4 4 4 0 2 2 0 0 0 0 0.14 0.71 -3485 CHD1 chromodomain helicase DNA binding protein 1 1178568 10 9 10 1 3 5 1 0 1 0 0.14 0.71 -3486 TNMD tenomodulin 219968 3 3 3 1 0 1 2 0 0 0 0.14 0.71 -3487 AVPI1 arginine vasopressin-induced 1 80696 2 2 2 0 2 0 0 0 0 0 0.14 0.71 -3488 SAA4 serum amyloid A4, constitutive 90720 2 2 2 1 0 0 1 0 1 0 0.14 0.71 -3489 ACPL2 acid phosphatase-like 2 327712 5 5 5 1 2 1 2 0 0 0 0.14 0.71 -3490 SPCS1 signal peptidase complex subunit 1 homolog (S. cerevisiae) 80836 1 1 1 0 0 0 0 0 1 0 0.14 0.71 -3491 KRTAP19-4 keratin associated protein 19-4 58016 1 1 1 1 0 0 1 0 0 0 0.14 0.71 -3492 RAP1B RAP1B, member of RAS oncogene family 129696 2 2 2 0 1 0 1 0 0 0 0.14 0.71 -3493 RASGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) 541256 5 5 5 2 3 1 0 0 1 0 0.14 0.71 -3494 LY6E lymphocyte antigen 6 complex, locus E 86100 2 2 2 0 0 2 0 0 0 0 0.14 0.71 -3495 HACE1 HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 615104 7 6 7 4 1 3 3 0 0 0 0.14 0.71 -3496 TSPAN33 tetraspanin 33 192136 3 3 3 0 0 0 3 0 0 0 0.14 0.72 -3497 RNF180 ring finger protein 180 269472 4 3 4 1 0 1 3 0 0 0 0.14 0.72 -3498 MAP7D3 MAP7 domain containing 3 588896 7 7 7 0 3 2 2 0 0 0 0.14 0.72 -3499 TNFRSF9 tumor necrosis factor receptor superfamily, member 9 170688 3 3 3 1 1 1 1 0 0 0 0.14 0.72 -3500 ZNF493 zinc finger protein 493 525056 6 5 6 0 1 2 2 0 1 0 0.14 0.72 -3501 GBA3 glucosidase, beta, acid 3 (cytosolic) 318688 3 3 3 2 0 1 0 0 2 0 0.14 0.72 -3502 C2orf42 chromosome 2 open reading frame 42 393568 4 4 4 0 0 2 2 0 0 0 0.14 0.72 -3503 FIGNL1 fidgetin-like 1 454496 5 5 5 0 2 1 1 0 1 0 0.14 0.72 -3504 ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1 306488 3 3 3 1 0 1 1 0 1 0 0.14 0.72 -3505 OR5H14 olfactory receptor, family 5, subfamily H, member 14 209888 3 3 3 0 1 1 1 0 0 0 0.14 0.72 -3506 GSDMC 353696 7 5 7 0 1 2 3 0 1 0 0.14 0.72 -3507 SMG7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) 777056 6 6 6 0 3 2 1 0 0 0 0.14 0.72 -3508 ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 1137640 17 9 17 1 4 6 4 0 3 0 0.14 0.72 -3509 RAE1 RAE1 RNA export 1 homolog (S. pombe) 257824 3 3 3 0 2 0 0 0 1 0 0.14 0.72 -3510 SMR3A submaxillary gland androgen regulated protein 3A 92512 1 1 1 0 0 1 0 0 0 0 0.14 0.72 -3511 COX7B2 cytochrome c oxidase subunit VIIb2 56000 1 1 1 0 0 1 0 0 0 0 0.14 0.72 -3512 CTSG cathepsin G 176512 3 3 3 1 3 0 0 0 0 0 0.14 0.72 -3513 TSPYL4 TSPY-like 4 221296 4 3 4 0 1 1 0 0 2 0 0.14 0.72 -3514 LZTS2 leucine zipper, putative tumor suppressor 2 264544 3 3 2 2 0 0 0 1 2 0 0.14 0.72 -3515 APCDD1L adenomatosis polyposis coli down-regulated 1-like 266020 5 5 5 4 5 0 0 0 0 0 0.14 0.72 -3516 SYT5 synaptotagmin V 221312 4 4 4 1 2 1 1 0 0 0 0.14 0.72 -3517 ABCB5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 862840 14 8 14 2 4 4 5 0 1 0 0.14 0.72 -3518 VAMP3 vesicle-associated membrane protein 3 (cellubrevin) 70872 2 2 2 1 1 1 0 0 0 0 0.14 0.72 -3519 RAD1 RAD1 homolog (S. pombe) 194656 2 2 2 0 0 0 1 0 1 0 0.14 0.72 -3520 C9orf102 chromosome 9 open reading frame 102 489160 6 6 6 0 2 1 2 0 1 0 0.14 0.72 -3521 C4orf22 chromosome 4 open reading frame 22 162624 3 3 3 0 1 2 0 0 0 0 0.14 0.72 -3522 SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13 269696 3 3 3 0 1 1 0 0 1 0 0.14 0.72 -3523 SRRT 606368 10 9 10 2 5 3 2 0 0 0 0.14 0.72 -3524 SIRT1 sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) 413504 5 5 5 1 1 2 1 0 1 0 0.14 0.72 -3525 ZNF304 zinc finger protein 304 446208 6 6 6 1 2 2 2 0 0 0 0.14 0.72 -3526 MAN1A1 mannosidase, alpha, class 1A, member 1 396816 5 5 5 1 0 2 2 0 1 0 0.14 0.72 -3527 IQGAP1 IQ motif containing GTPase activating protein 1 1127356 13 10 13 1 2 7 2 0 2 0 0.14 0.72 -3528 GOLPH3 golgi phosphoprotein 3 (coat-protein) 171416 3 3 3 0 2 0 0 0 1 0 0.14 0.72 -3529 C14orf118 chromosome 14 open reading frame 118 342496 5 4 5 1 1 1 0 0 1 2 0.14 0.72 -3530 LY86 lymphocyte antigen 86 114016 2 2 2 0 0 0 2 0 0 0 0.14 0.72 -3531 C10orf137 chromosome 10 open reading frame 137 821856 8 8 8 2 3 2 2 1 0 0 0.14 0.72 -3532 ZNF826 zinc finger protein 826 120512 1 1 1 1 0 1 0 0 0 0 0.14 0.72 -3533 EDA2R ectodysplasin A2 receptor 198888 2 2 2 2 0 1 0 0 1 0 0.14 0.72 -3534 WIPF1 WAS/WASL interacting protein family, member 1 344960 6 6 6 1 4 2 0 0 0 0 0.14 0.72 -3535 SAE1 SUMO1 activating enzyme subunit 1 229176 3 3 3 1 0 3 0 0 0 0 0.14 0.72 -3536 OR6C6 olfactory receptor, family 6, subfamily C, member 6 212576 4 3 4 0 1 3 0 0 0 0 0.14 0.72 -3537 FMO1 flavin containing monooxygenase 1 365344 3 3 3 1 1 0 1 0 1 0 0.14 0.72 -3538 BVES blood vessel epicardial substance 248864 4 3 4 2 0 1 1 0 2 0 0.14 0.72 -3539 ADAMDEC1 ADAM-like, decysin 1 329056 4 4 4 1 0 1 3 0 0 0 0.14 0.72 -3540 MEF2C myocyte enhancer factor 2C 333184 9 7 9 1 5 2 2 0 0 0 0.14 0.72 -3541 PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) 433636 5 5 5 0 4 0 0 1 0 0 0.14 0.72 -3542 CKM creatine kinase, muscle 262840 5 5 5 3 3 1 0 0 1 0 0.14 0.72 -3543 GRPEL2 GrpE-like 2, mitochondrial (E. coli) 155456 1 1 1 0 0 0 0 0 1 0 0.14 0.72 -3544 DTL denticleless homolog (Drosophila) 504672 4 4 4 2 0 1 1 0 2 0 0.14 0.72 -3545 TEX10 testis expressed 10 637588 7 7 7 1 0 4 2 0 1 0 0.14 0.72 -3546 LIMCH1 LIM and calponin homology domains 1 736820 9 6 9 0 3 3 1 0 2 0 0.14 0.72 -3547 CAMK1D calcium/calmodulin-dependent protein kinase ID 277088 4 4 4 0 2 1 0 0 1 0 0.14 0.72 -3548 RUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) 240344 3 3 3 0 0 0 1 1 1 0 0.14 0.72 -3549 MBD2 methyl-CpG binding domain protein 2 239960 3 3 3 0 1 0 1 0 1 0 0.14 0.72 -3550 CDC25B cell division cycle 25 homolog B (S. pombe) 367900 5 5 5 0 1 0 3 1 0 0 0.14 0.72 -3551 STXBP6 syntaxin binding protein 6 (amisyn) 143416 3 3 3 0 3 0 0 0 0 0 0.14 0.72 -3552 TULP2 tubby like protein 2 360864 5 5 5 1 4 1 0 0 0 0 0.14 0.72 -3553 CTSH cathepsin H 204032 3 3 3 0 0 1 1 0 1 0 0.14 0.72 -3554 CCDC34 coiled-coil domain containing 34 258204 5 5 5 0 2 2 1 0 0 0 0.14 0.72 -3555 LILRA5 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 210112 3 3 3 1 1 1 0 0 1 0 0.14 0.72 -3556 BTG4 B-cell translocation gene 4 155008 2 2 2 1 1 0 0 0 1 0 0.14 0.72 -3557 METT10D methyltransferase 10 domain containing 386400 8 6 7 3 4 2 1 0 1 0 0.14 0.72 -3558 ZNF138 zinc finger protein 138 180768 2 2 2 1 1 0 1 0 0 0 0.14 0.72 -3559 CYBRD1 cytochrome b reductase 1 196448 3 3 3 0 0 2 0 0 1 0 0.14 0.72 -3560 CAP2 CAP, adenylate cyclase-associated protein, 2 (yeast) 331968 4 4 4 2 0 3 1 0 0 0 0.14 0.72 -3561 RPP14 ribonuclease P/MRP 14kDa subunit 88480 2 2 1 0 0 2 0 0 0 0 0.14 0.72 -3562 SIRT4 sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae) 214368 4 4 4 0 1 1 0 1 1 0 0.14 0.72 -3563 TRMU tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 251244 3 3 3 0 2 1 0 0 0 0 0.14 0.72 -3564 SGOL1 shugoshin-like 1 (S. pombe) 389312 4 4 4 0 1 1 1 0 1 0 0.14 0.72 -3565 ZNF202 zinc finger protein 202 434952 4 4 4 1 1 2 0 0 1 0 0.14 0.72 -3566 RGS9 regulator of G-protein signaling 9 472864 7 7 7 1 5 2 0 0 0 0 0.14 0.72 -3567 ZBED2 zinc finger, BED-type containing 2 148064 3 3 3 0 1 2 0 0 0 0 0.14 0.72 -3568 SLC9A10 solute carrier family 9, member 10 814528 8 6 8 3 1 3 2 0 2 0 0.14 0.72 -3569 THBS1 thrombospondin 1 805728 10 10 10 5 4 5 1 0 0 0 0.14 0.72 -3570 INVS inversin 729428 6 6 6 1 3 0 1 0 2 0 0.14 0.72 -3571 SFTPC surfactant, pulmonary-associated protein C 137200 1 1 1 0 0 0 0 0 1 0 0.14 0.72 -3572 C1orf125 chromosome 1 open reading frame 125 703136 10 7 9 1 2 6 1 0 1 0 0.14 0.72 -3573 CHSY3 chondroitin sulfate synthase 3 469728 6 5 6 1 0 4 2 0 0 0 0.14 0.72 -3574 YARS2 tyrosyl-tRNA synthetase 2, mitochondrial 312508 4 4 4 0 1 2 0 0 1 0 0.14 0.73 -3575 ULK3 unc-51-like kinase 3 (C. elegans) 237072 3 3 3 0 1 0 1 0 1 0 0.14 0.73 -3576 TOB2 transducer of ERBB2, 2 226436 2 2 2 0 0 0 0 0 2 0 0.14 0.73 -3577 MYST1 MYST histone acetyltransferase 1 279516 3 3 3 0 1 1 1 0 0 0 0.14 0.73 -3578 COL24A1 collagen, type XXIV, alpha 1 1206240 9 9 9 0 2 4 2 0 1 0 0.14 0.73 -3579 PRR13 proline rich 13 71456 1 1 1 0 0 0 1 0 0 0 0.14 0.73 -3580 OR6K6 olfactory receptor, family 6, subfamily K, member 6 232064 4 4 4 1 0 3 1 0 0 0 0.14 0.73 -3581 EDIL3 EGF-like repeats and discoidin I-like domains 3 333088 3 3 3 3 0 2 1 0 0 0 0.14 0.73 -3582 SLC9A7 solute carrier family 9 (sodium/hydrogen exchanger), member 7 467784 6 5 6 0 1 2 1 0 2 0 0.14 0.73 -3583 PRKRIR protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) 495712 4 4 4 0 3 1 0 0 0 0 0.14 0.73 -3584 RB1 retinoblastoma 1 (including osteosarcoma) 616896 8 5 7 2 1 1 3 0 1 2 0.14 0.73 -3585 TPR translocated promoter region (to activated MET oncogene) 1634304 20 12 19 3 6 7 2 0 2 3 0.14 0.73 -3586 MALT1 mucosa associated lymphoid tissue lymphoma translocation gene 1 521920 7 6 7 2 2 2 2 0 1 0 0.14 0.73 -3587 C21orf70 chromosome 21 open reading frame 70 100492 2 2 2 0 1 1 0 0 0 0 0.14 0.73 -3588 C1orf38 chromosome 1 open reading frame 38 412160 4 4 4 0 0 1 2 0 1 0 0.14 0.73 -3589 EFHA2 EF-hand domain family, member A2 298184 3 3 3 2 1 0 1 0 1 0 0.14 0.73 -3590 ACSL6 acyl-CoA synthetase long-chain family member 6 521780 6 6 6 2 2 1 2 1 0 0 0.14 0.73 -3591 MAT2B methionine adenosyltransferase II, beta 229896 3 3 3 0 1 2 0 0 0 0 0.14 0.73 -3592 FAM164C 308896 4 4 4 1 2 1 0 0 1 0 0.14 0.73 -3593 TROVE2 TROVE domain family, member 2 378112 6 5 6 0 1 2 3 0 0 0 0.14 0.73 -3594 HOOK1 hook homolog 1 (Drosophila) 470792 5 5 5 0 2 1 1 1 0 0 0.14 0.73 -3595 PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 219072 3 3 3 1 0 2 1 0 0 0 0.15 0.73 -3596 MEIS2 Meis homeobox 2 345156 5 5 4 2 0 3 0 0 2 0 0.15 0.73 -3597 GPR61 G protein-coupled receptor 61 303716 4 4 3 0 3 1 0 0 0 0 0.15 0.73 -3598 SIDT1 SID1 transmembrane family, member 1 557144 7 7 7 4 2 1 4 0 0 0 0.15 0.73 -3599 SUSD4 sushi domain containing 4 368536 5 5 4 1 1 1 2 0 1 0 0.15 0.73 -3600 ZIM2 zinc finger, imprinted 2 362880 7 5 6 1 0 4 2 0 1 0 0.15 0.73 -3601 LOC728819 213248 3 3 3 0 1 1 0 0 1 0 0.15 0.73 -3602 TWSG1 twisted gastrulation homolog 1 (Drosophila) 154112 3 3 3 0 0 2 1 0 0 0 0.15 0.73 -3603 HTR1B 5-hydroxytryptamine (serotonin) receptor 1B 263648 6 6 6 0 6 0 0 0 0 0 0.15 0.73 -3604 TMPPE 305984 4 4 4 1 2 1 1 0 0 0 0.15 0.73 -3605 WNT10B wingless-type MMTV integration site family, member 10B 232972 4 4 4 1 2 0 0 0 2 0 0.15 0.73 -3606 RASSF4 Ras association (RalGDS/AF-6) domain family member 4 215512 4 4 4 1 3 0 1 0 0 0 0.15 0.73 -3607 RNF152 ring finger protein 152 136472 2 2 2 1 1 0 0 0 1 0 0.15 0.73 -3608 ZNF23 zinc finger protein 23 (KOX 16) 435456 6 5 6 1 1 3 2 0 0 0 0.15 0.73 -3609 RWDD1 RWD domain containing 1 170240 3 3 3 0 0 2 1 0 0 0 0.15 0.73 -3610 MTMR6 myotubularin related protein 6 427808 4 4 4 1 0 2 2 0 0 0 0.15 0.73 -3611 LAIR2 leukocyte-associated immunoglobulin-like receptor 2 107296 2 2 2 1 1 1 0 0 0 0 0.15 0.73 -3612 UQCRC2 ubiquinol-cytochrome c reductase core protein II 317632 3 3 3 0 1 1 0 0 1 0 0.15 0.73 -3613 C2orf80 137536 2 2 2 1 1 0 0 0 1 0 0.15 0.73 -3614 ZNF678 zinc finger protein 678 335328 9 4 8 1 0 5 2 0 2 0 0.15 0.73 -3615 ZFYVE16 zinc finger, FYVE domain containing 16 1050112 12 8 12 0 1 6 3 0 2 0 0.15 0.73 -3616 CHMP5 chromatin modifying protein 5 155008 2 2 2 1 0 1 0 0 1 0 0.15 0.73 -3617 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 620272 9 8 8 2 6 3 0 0 0 0 0.15 0.73 -3618 SPG20 spastic paraplegia 20 (Troyer syndrome) 455392 6 5 6 2 3 0 2 0 1 0 0.15 0.73 -3619 DAZL deleted in azoospermia-like 208768 2 2 2 1 1 0 0 0 1 0 0.15 0.73 -3620 ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 912296 9 9 9 1 3 3 2 1 0 0 0.15 0.73 -3621 HIST1H2BD histone cluster 1, H2bd 86240 2 2 2 0 0 1 1 0 0 0 0.15 0.73 -3622 STK4 serine/threonine kinase 4 332488 3 3 3 0 0 0 2 0 1 0 0.15 0.73 -3623 BLZF1 basic leucine zipper nuclear factor 1 (JEM-1) 274848 4 4 4 0 2 1 0 0 1 0 0.15 0.73 -3624 SCOC short coiled-coil protein 86240 1 1 1 0 0 0 1 0 0 0 0.15 0.73 -3625 ACER1 183456 4 4 4 1 2 0 2 0 0 0 0.15 0.73 -3626 CD151 CD151 molecule (Raph blood group) 142352 1 1 1 0 0 0 0 0 1 0 0.15 0.73 -3627 C9orf23 chromosome 9 open reading frame 23 111104 2 2 2 2 0 2 0 0 0 0 0.15 0.73 -3628 SPATA22 spermatogenesis associated 22 251640 4 3 3 0 3 0 0 0 1 0 0.15 0.73 -3629 ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 724640 10 7 10 5 1 7 0 0 2 0 0.15 0.73 -3630 GPR183 237188 4 4 4 1 0 1 3 0 0 0 0.15 0.73 -3631 PPP2R1A protein phosphatase 2 (formerly 2A), regulatory subunit A , alpha isoform 396928 5 5 3 2 5 0 0 0 0 0 0.15 0.73 -3632 COMMD2 COMM domain containing 2 138880 3 3 3 0 1 2 0 0 0 0 0.15 0.73 -3633 SLC39A7 solute carrier family 39 (zinc transporter), member 7 265832 4 4 3 0 2 1 0 0 1 0 0.15 0.73 -3634 ODF3 outer dense fiber of sperm tails 3 168080 2 2 2 0 0 1 0 0 1 0 0.15 0.73 -3635 FLOT1 flotillin 1 214032 3 3 3 0 0 1 0 2 0 0 0.15 0.73 -3636 ACSM5 acyl-CoA synthetase medium-chain family member 5 401408 4 4 4 2 2 1 0 0 1 0 0.15 0.73 -3637 C1orf57 chromosome 1 open reading frame 57 132832 2 2 2 0 1 1 0 0 0 0 0.15 0.73 -3638 GIPC2 GIPC PDZ domain containing family, member 2 187152 4 3 4 1 2 0 1 0 1 0 0.15 0.73 -3639 GM2A GM2 ganglioside activator 133952 2 2 2 0 1 1 0 0 0 0 0.15 0.73 -3640 DDX56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 370400 5 5 5 0 3 2 0 0 0 0 0.15 0.74 -3641 SCAND3 894656 10 5 10 4 1 1 0 1 3 4 0.15 0.74 -3642 PARP8 poly (ADP-ribose) polymerase family, member 8 589876 8 6 8 1 2 3 2 0 1 0 0.15 0.74 -3643 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 260736 3 3 3 2 0 2 1 0 0 0 0.15 0.74 -3644 PHF23 PHD finger protein 23 271376 4 3 4 1 1 1 0 0 2 0 0.15 0.74 -3645 OR6C68 olfactory receptor, family 6, subfamily C, member 68 213416 2 2 2 0 0 0 2 0 0 0 0.15 0.74 -3646 GSTM4 glutathione S-transferase M4 159936 2 2 2 0 0 2 0 0 0 0 0.15 0.74 -3647 OR4C6 olfactory receptor, family 4, subfamily C, member 6 209216 3 3 3 1 0 3 0 0 0 0 0.15 0.74 -3648 PPP1R9A protein phosphatase 1, regulatory (inhibitor) subunit 9A 904016 9 7 9 3 3 2 2 0 0 2 0.15 0.74 -3649 JTB jumping translocation breakpoint 103264 2 2 2 0 0 2 0 0 0 0 0.15 0.74 -3650 FAM183A 94304 2 2 2 0 0 2 0 0 0 0 0.15 0.74 -3651 SLC7A13 solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 320096 3 3 3 1 0 0 1 0 2 0 0.15 0.74 -3652 PRR4 proline rich 4 (lacrimal) 118272 1 1 1 0 0 0 0 0 1 0 0.15 0.74 -3653 WFDC9 WAP four-disulfide core domain 9 63168 1 1 1 0 0 0 0 0 1 0 0.15 0.74 -3654 PTPRG protein tyrosine phosphatase, receptor type, G 975060 11 10 11 1 3 3 3 0 2 0 0.15 0.74 -3655 BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 498848 8 6 7 0 4 3 0 0 1 0 0.15 0.74 -3656 FAM171B 553748 9 6 8 1 4 4 0 0 1 0 0.15 0.74 -3657 FAF1 Fas (TNFRSF6) associated factor 1 442528 4 4 4 1 0 3 0 0 1 0 0.15 0.74 -3658 ZNF670 zinc finger protein 670 265664 4 4 4 2 2 1 1 0 0 0 0.15 0.74 -3659 ERI2 227272 4 3 4 0 1 0 2 0 1 0 0.15 0.74 -3660 TMEM99 transmembrane protein 99 168644 2 2 2 0 0 0 2 0 0 0 0.15 0.74 -3661 KLHL23 kelch-like 23 (Drosophila) 378336 5 5 5 1 1 3 0 0 1 0 0.15 0.74 -3662 POU1F1 POU class 1 homeobox 1 203840 5 3 5 0 2 1 1 0 1 0 0.15 0.74 -3663 PRKCE protein kinase C, epsilon 504336 6 6 6 1 4 1 0 0 1 0 0.15 0.74 -3664 OR5M8 olfactory receptor, family 5, subfamily M, member 8 210560 3 3 3 1 1 2 0 0 0 0 0.15 0.74 -3665 DOCK9 dedicator of cytokinesis 9 1389880 12 11 12 2 5 4 2 0 1 0 0.15 0.74 -3666 EPB41L4A erythrocyte membrane protein band 4.1 like 4A 482272 9 6 9 1 4 2 2 0 1 0 0.15 0.74 -3667 OPN5 opsin 5 241920 3 3 3 0 2 0 0 0 1 0 0.15 0.74 -3668 TEX9 testis expressed 9 274176 3 3 3 1 1 0 2 0 0 0 0.15 0.74 -3669 C3orf36 chromosome 3 open reading frame 36 108752 2 2 2 0 1 0 1 0 0 0 0.15 0.74 -3670 OR4D11 olfactory receptor, family 4, subfamily D, member 11 210560 3 3 3 0 1 2 0 0 0 0 0.15 0.74 -3671 ARHGEF1 Rho guanine nucleotide exchange factor (GEF) 1 602464 5 5 5 1 1 0 2 1 1 0 0.15 0.74 -3672 FGFBP1 fibroblast growth factor binding protein 1 150836 2 2 2 0 1 1 0 0 0 0 0.15 0.74 -3673 RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) 109760 2 2 2 0 0 2 0 0 0 0 0.15 0.74 -3674 ELMOD3 272384 3 3 3 0 1 1 0 0 1 0 0.15 0.74 -3675 CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) 194656 3 3 3 1 0 2 0 1 0 0 0.15 0.74 -3676 ESCO2 establishment of cohesion 1 homolog 2 (S. cerevisiae) 413504 4 4 4 1 0 2 1 0 1 0 0.15 0.74 -3677 CD247 CD247 molecule 118048 2 2 2 0 1 0 0 0 1 0 0.15 0.74 -3678 IARS isoleucyl-tRNA synthetase 878304 6 6 6 0 1 2 2 0 1 0 0.15 0.74 -3679 SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 382816 5 5 5 1 1 4 0 0 0 0 0.15 0.74 -3680 FBXO24 F-box protein 24 399392 5 5 5 0 3 1 0 0 1 0 0.15 0.74 -3681 TP53AIP1 74060 1 1 1 0 0 0 1 0 0 0 0.15 0.74 -3682 TMEM170B 78240 3 2 3 0 0 2 1 0 0 0 0.15 0.74 -3683 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle) 333536 4 4 4 1 1 2 1 0 0 0 0.15 0.74 -3684 PIWIL2 piwi-like 2 (Drosophila) 674240 10 9 10 4 4 6 0 0 0 0 0.15 0.74 -3685 ZNF117 zinc finger protein 117 327040 7 4 5 0 0 6 1 0 0 0 0.15 0.74 -3686 HS3ST2 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 196784 3 3 3 2 1 0 0 1 1 0 0.15 0.74 -3687 UNC119 unc-119 homolog (C. elegans) 132328 1 1 1 0 0 0 0 0 1 0 0.15 0.74 -3688 NCSTN nicastrin 492352 5 5 5 2 1 1 1 0 2 0 0.15 0.74 -3689 STIL SCL/TAL1 interrupting locus 880544 9 7 9 0 3 4 1 0 1 0 0.15 0.74 -3690 PEX11A peroxisomal biogenesis factor 11A 161184 2 2 2 0 0 0 1 0 1 0 0.15 0.74 -3691 LOC285033 82656 1 1 1 1 0 0 0 0 1 0 0.15 0.74 -3692 UBE2C ubiquitin-conjugating enzyme E2C 139808 2 2 2 0 0 0 2 0 0 0 0.15 0.74 -3693 TPMT thiopurine S-methyltransferase 172480 2 2 2 0 0 1 0 0 1 0 0.15 0.74 -3694 CNGA3 cyclic nucleotide gated channel alpha 3 471884 6 6 6 4 2 0 2 0 2 0 0.15 0.74 -3695 LASS5 LAG1 homolog, ceramide synthase 5 260764 3 3 3 0 0 3 0 0 0 0 0.15 0.74 -3696 C3orf24 chromosome 3 open reading frame 24 120512 2 2 2 1 1 1 0 0 0 0 0.15 0.74 -3697 CABYR calcium binding tyrosine-(Y)-phosphorylation regulated 470624 4 4 4 1 0 0 2 0 2 0 0.15 0.74 -3698 TTC24 tetratricopeptide repeat domain 24 198920 2 2 2 1 0 1 0 0 1 0 0.15 0.74 -3699 NDUFA1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa 50400 1 1 1 0 1 0 0 0 0 0 0.15 0.74 -3700 ZNF395 zinc finger protein 395 345136 3 3 2 3 0 0 1 0 2 0 0.15 0.74 -3701 AQP4 aquaporin 4 222208 3 3 3 0 0 2 1 0 0 0 0.15 0.74 -3702 CDNF 124216 2 2 2 0 1 1 0 0 0 0 0.15 0.74 -3703 CTNNBIP1 catenin, beta interacting protein 1 44872 1 1 1 0 1 0 0 0 0 0 0.15 0.74 -3704 OR2C1 olfactory receptor, family 2, subfamily C, member 1 211232 3 3 3 0 1 0 2 0 0 0 0.15 0.74 -3705 NFYC nuclear transcription factor Y, gamma 233856 3 3 3 0 0 2 1 0 0 0 0.15 0.74 -3706 MC4R melanocortin 4 receptor 222152 4 3 4 1 0 1 3 0 0 0 0.15 0.74 -3707 TAS1R1 taste receptor, type 1, member 1 539336 7 7 7 0 0 3 4 0 0 0 0.15 0.74 -3708 TRPC3 transient receptor potential cation channel, subfamily C, member 3 581280 8 7 8 4 4 1 3 0 0 0 0.15 0.75 -3709 AKAP5 A kinase (PRKA) anchor protein 5 288344 4 2 3 1 0 1 0 0 1 2 0.15 0.75 -3710 SHD Src homology 2 domain containing transforming protein D 230672 4 4 4 1 2 0 2 0 0 0 0.15 0.75 -3711 PCDHB1 protocadherin beta 1 551096 8 7 8 8 3 4 1 0 0 0 0.15 0.75 -3712 NDRG2 NDRG family member 2 263424 3 3 3 4 1 1 0 0 1 0 0.15 0.75 -3713 TUBE1 tubulin, epsilon 1 315984 5 4 4 0 1 3 1 0 0 0 0.15 0.75 -3714 ALDH1A3 aldehyde dehydrogenase 1 family, member A3 333228 6 5 6 1 2 2 1 0 1 0 0.15 0.75 -3715 SNRPN small nuclear ribonucleoprotein polypeptide N 168224 2 2 2 0 0 0 1 0 1 0 0.15 0.75 -3716 THEG Theg homolog (mouse) 251608 4 4 4 2 0 3 1 0 0 0 0.15 0.75 -3717 ANKRD49 ankyrin repeat domain 49 163072 3 3 3 0 1 2 0 0 0 0 0.15 0.75 -3718 RCHY1 ring finger and CHY zinc finger domain containing 1 184128 2 2 2 0 0 1 0 0 1 0 0.15 0.75 -3719 SGPP2 sphingosine-1-phosphate phosphotase 2 223328 4 3 4 0 2 0 2 0 0 0 0.15 0.75 -3720 CDC23 cell division cycle 23 homolog (S. cerevisiae) 416192 6 5 6 2 1 4 0 0 1 0 0.15 0.75 -3721 NGFRAP1 nerve growth factor receptor (TNFRSF16) associated protein 1 76160 1 1 1 1 0 1 0 0 0 0 0.15 0.75 -3722 SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 291200 5 4 5 4 2 1 0 1 1 0 0.15 0.75 -3723 AADACL4 arylacetamide deacetylase-like 4 277760 4 4 3 2 4 0 0 0 0 0 0.15 0.75 -3724 FAM134B family with sequence similarity 134, member B 285880 4 4 4 0 1 0 3 0 0 0 0.15 0.75 -3725 TIMP1 TIMP metallopeptidase inhibitor 1 144256 2 2 2 0 1 1 0 0 0 0 0.15 0.75 -3726 WRN Werner syndrome 993440 12 9 12 0 5 4 2 0 1 0 0.15 0.75 -3727 PPEF1 protein phosphatase, EF-hand calcium binding domain 1 453824 4 4 4 4 0 0 1 1 2 0 0.15 0.75 -3728 FAM110B family with sequence similarity 110, member B 250208 4 4 4 5 3 1 0 0 0 0 0.15 0.75 -3729 SCGN secretagogin, EF-hand calcium binding protein 196000 5 3 5 2 3 1 1 0 0 0 0.15 0.75 -3730 SRPRB signal recognition particle receptor, B subunit 189056 2 2 2 1 0 1 1 0 0 0 0.15 0.75 -3731 DNAJC14 DnaJ (Hsp40) homolog, subfamily C, member 14 477792 5 5 5 1 2 1 0 0 2 0 0.15 0.75 -3732 C3orf64 chromosome 3 open reading frame 64 309120 4 4 4 0 1 3 0 0 0 0 0.15 0.75 -3733 RFWD2 ring finger and WD repeat domain 2 442540 5 5 5 0 0 3 1 0 1 0 0.15 0.75 -3734 TBX5 T-box 5 371168 5 5 5 2 3 1 1 0 0 0 0.16 0.75 -3735 CCDC102B coiled-coil domain containing 102B 351680 5 5 5 0 1 3 1 0 0 0 0.16 0.75 -3736 INTS8 integrator complex subunit 8 663488 6 5 6 3 1 1 1 0 3 0 0.16 0.75 -3737 TCEA1 transcription elongation factor A (SII), 1 210136 4 3 4 0 3 1 0 0 0 0 0.16 0.75 -3738 CRADD CASP2 and RIPK1 domain containing adaptor with death domain 134596 2 2 2 3 1 0 1 0 0 0 0.16 0.75 -3739 ABHD12B abhydrolase domain containing 12B 181888 2 2 2 0 0 2 0 0 0 0 0.16 0.75 -3740 CRYGS crystallin, gamma S 122976 2 2 2 0 0 1 0 0 1 0 0.16 0.75 -3741 RBM22 RNA binding motif protein 22 292768 4 4 4 1 3 1 0 0 0 0 0.16 0.75 -3742 TAS2R30 taste receptor, type 2, member 30 215936 2 2 2 2 0 0 2 0 0 0 0.16 0.75 -3743 TBXAS1 thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A) 371168 5 5 5 0 2 2 1 0 0 0 0.16 0.75 -3744 MAP9 microtubule-associated protein 9 436768 3 3 3 2 0 0 2 0 1 0 0.16 0.75 -3745 YBX1 Y box binding protein 1 186592 3 3 3 0 2 0 0 0 1 0 0.16 0.75 -3746 CMC1 70336 1 1 1 2 0 0 0 0 1 0 0.16 0.75 -3747 GATA3 GATA binding protein 3 249260 4 3 4 2 3 0 0 0 1 0 0.16 0.75 -3748 CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) 346824 4 4 4 0 1 1 0 0 2 0 0.16 0.75 -3749 GRAMD2 GRAM domain containing 2 239232 3 3 3 1 1 1 1 0 0 0 0.16 0.75 -3750 CTRL chymotrypsin-like 183400 2 2 2 0 0 1 0 0 1 0 0.16 0.75 -3751 ZC3H7B zinc finger CCCH-type containing 7B 628124 5 5 5 0 3 0 0 0 2 0 0.16 0.75 -3752 SERP2 stress-associated endoplasmic reticulum protein family member 2 47040 1 1 1 0 0 1 0 0 0 0 0.16 0.75 -3753 CRYGC crystallin, gamma C 120288 2 2 2 0 1 1 0 0 0 0 0.16 0.75 -3754 ANKRD36B ankyrin repeat domain 36B 346816 4 4 4 0 1 2 0 0 1 0 0.16 0.75 -3755 CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 402304 4 4 4 1 3 0 0 0 1 0 0.16 0.75 -3756 PPP1CB protein phosphatase 1, catalytic subunit, beta isoform 219968 2 2 2 0 0 1 1 0 0 0 0.16 0.75 -3757 RFX3 regulatory factor X, 3 (influences HLA class II expression) 553280 5 5 5 1 1 1 2 0 1 0 0.16 0.75 -3758 KRT73 keratin 73 371616 4 4 4 3 2 2 0 0 0 0 0.16 0.75 -3759 FAM173B 161728 4 3 4 0 2 1 0 0 1 0 0.16 0.75 -3760 PDIA5 protein disulfide isomerase family A, member 5 354368 4 4 4 0 2 1 0 0 1 0 0.16 0.75 -3761 ZNF782 zinc finger protein 782 473984 12 6 11 0 3 5 4 0 0 0 0.16 0.75 -3762 UGT2B4 UDP glucuronosyltransferase 2 family, polypeptide B4 360864 3 3 3 0 0 2 0 0 1 0 0.16 0.75 -3763 MSC musculin (activated B-cell factor-1) 97888 3 3 3 1 1 1 1 0 0 0 0.16 0.75 -3764 CD300E CD300e molecule 142016 2 2 2 1 1 0 0 0 1 0 0.16 0.75 -3765 KLRF1 killer cell lectin-like receptor subfamily F, member 1 161368 3 3 3 0 0 2 1 0 0 0 0.16 0.75 -3766 MANBAL mannosidase, beta A, lysosomal-like 59584 1 1 1 0 0 1 0 0 0 0 0.16 0.75 -3767 SAMD12 sterile alpha motif domain containing 12 145376 2 2 2 1 0 1 1 0 0 0 0.16 0.75 -3768 SLC5A4 solute carrier family 5 (low affinity glucose cotransporter), member 4 456960 4 4 4 2 1 0 2 0 1 0 0.16 0.75 -3769 KIAA1586 KIAA1586 491376 4 4 4 1 1 0 1 0 2 0 0.16 0.75 -3770 CD27 CD27 molecule 180768 3 3 3 2 1 2 0 0 0 0 0.16 0.75 -3771 MPPED2 metallophosphoesterase domain containing 2 209952 3 3 3 1 0 3 0 0 0 0 0.16 0.75 -3772 PRPSAP1 phosphoribosyl pyrophosphate synthetase-associated protein 1 229376 4 4 4 2 2 1 1 0 0 0 0.16 0.75 -3773 UHRF1BP1L UHRF1 (ICBP90) binding protein 1-like 1008672 8 7 8 1 4 0 1 0 3 0 0.16 0.75 -3774 GUCA1B guanylate cyclase activator 1B (retina) 136344 3 3 3 0 2 1 0 0 0 0 0.16 0.75 -3775 GLIPR1L2 GLI pathogenesis-related 1 like 2 174272 2 2 2 1 0 1 1 0 0 0 0.16 0.75 -3776 CCDC64 coiled-coil domain containing 64 303940 6 6 6 1 4 1 1 0 0 0 0.16 0.75 -3777 ACBD3 acyl-Coenzyme A binding domain containing 3 304976 5 5 5 0 3 0 2 0 0 0 0.16 0.75 -3778 RGS21 regulator of G-protein signaling 21 106400 2 2 2 2 0 1 1 0 0 0 0.16 0.75 -3779 LRRC40 leucine rich repeat containing 40 418656 6 4 6 0 4 0 0 0 2 0 0.16 0.75 -3780 HEBP1 heme binding protein 1 131264 3 3 3 0 2 1 0 0 0 0 0.16 0.75 -3781 ELMOD2 ELMO/CED-12 domain containing 2 204736 2 2 1 0 2 0 0 0 0 0 0.16 0.75 -3782 TMEM51 transmembrane protein 51 171640 2 2 2 1 0 1 1 0 0 0 0.16 0.75 -3783 CARS cysteinyl-tRNA synthetase 589596 6 6 6 1 2 2 1 0 1 0 0.16 0.75 -3784 PCDHGA9 protocadherin gamma subfamily A, 9 641984 8 7 8 0 5 2 0 0 1 0 0.16 0.75 -3785 C16orf90 95508 1 1 1 0 0 0 0 0 1 0 0.16 0.75 -3786 N4BP2L1 NEDD4 binding protein 2-like 1 170448 3 3 3 0 1 2 0 0 0 0 0.16 0.75 -3787 PRSS55 238924 6 4 6 2 2 4 0 0 0 0 0.16 0.75 -3788 HPRT1 hypoxanthine phosphoribosyltransferase 1 (Lesch-Nyhan syndrome) 148288 2 2 2 1 1 0 1 0 0 0 0.16 0.75 -3789 ZNF362 zinc finger protein 362 258312 4 4 4 0 1 2 1 0 0 0 0.16 0.75 -3790 PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 270384 6 4 6 1 3 2 1 0 0 0 0.16 0.75 -3791 POLR1D polymerase (RNA) I polypeptide D, 16kDa 166384 2 2 2 0 1 0 1 0 0 0 0.16 0.75 -3792 EPHB1 EPH receptor B1 676172 9 8 9 3 4 4 1 0 0 0 0.16 0.75 -3793 KIF5B kinesin family member 5B 670208 11 6 11 1 5 2 1 0 1 2 0.16 0.75 -3794 C7orf59 70512 1 1 1 0 0 0 0 0 1 0 0.16 0.75 -3795 CNOT6 CCR4-NOT transcription complex, subunit 6 384832 4 4 4 2 1 2 0 0 1 0 0.16 0.75 -3796 SFRP1 secreted frizzled-related protein 1 201236 3 3 3 1 1 0 2 0 0 0 0.16 0.75 -3797 TRIP4 thyroid hormone receptor interactor 4 388472 5 5 5 0 3 0 2 0 0 0 0.16 0.75 -3798 PKN2 protein kinase N2 679320 6 5 6 2 1 2 1 0 2 0 0.16 0.75 -3799 PRIMA1 proline rich membrane anchor 1 78708 1 1 1 0 0 0 1 0 0 0 0.16 0.75 -3800 APOBEC4 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) 248192 4 4 4 0 1 3 0 0 0 0 0.16 0.75 -3801 COL11A2 collagen, type XI, alpha 2 900936 11 8 11 2 3 4 2 0 2 0 0.16 0.75 -3802 C1orf194 chromosome 1 open reading frame 194 98824 2 2 2 0 0 1 1 0 0 0 0.16 0.75 -3803 PLXDC2 plexin domain containing 2 356328 5 4 5 3 1 2 2 0 0 0 0.16 0.75 -3804 C6orf15 chromosome 6 open reading frame 15 155768 2 2 2 0 0 1 0 0 1 0 0.16 0.75 -3805 TMEM141 transmembrane protein 141 64736 1 1 1 0 0 0 1 0 0 0 0.16 0.75 -3806 GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 163112 2 2 2 0 0 0 1 0 1 0 0.16 0.75 -3807 PGLYRP4 peptidoglycan recognition protein 4 258496 4 4 4 0 2 2 0 0 0 0 0.16 0.75 -3808 FAM82A2 327264 2 2 2 0 1 0 0 0 1 0 0.16 0.75 -3809 CCNA2 cyclin A2 295372 3 3 3 0 0 2 1 0 0 0 0.16 0.75 -3810 ZNF333 zinc finger protein 333 457408 7 5 7 1 3 1 1 0 2 0 0.16 0.75 -3811 RAB31 RAB31, member RAS oncogene family 121724 2 2 2 0 1 0 1 0 0 0 0.16 0.75 -3812 ZP3 zona pellucida glycoprotein 3 (sperm receptor) 282772 3 3 3 1 0 2 0 0 1 0 0.16 0.75 -3813 PTCRA pre T-cell antigen receptor alpha 146160 2 2 2 0 0 2 0 0 0 0 0.16 0.75 -3814 PREX1 1093140 16 14 15 11 9 5 2 0 0 0 0.16 0.75 -3815 KIAA1704 KIAA1704 235816 3 3 3 0 1 2 0 0 0 0 0.16 0.75 -3816 ZNF564 zinc finger protein 564 375872 7 5 7 0 1 4 2 0 0 0 0.16 0.75 -3817 SLC5A12 solute carrier family 5 (sodium/glucose cotransporter), member 12 429272 5 4 5 2 0 2 3 0 0 0 0.16 0.75 -3818 BMP10 bone morphogenetic protein 10 287392 3 3 3 3 0 2 0 0 1 0 0.16 0.75 -3819 PAQR9 progestin and adipoQ receptor family member IX 214216 6 5 6 1 4 2 0 0 0 0 0.16 0.75 -3820 KIR2DL4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4 162632 2 2 2 1 2 0 0 0 0 0 0.16 0.75 -3821 TUBG2 tubulin, gamma 2 306392 3 3 3 0 1 0 0 0 2 0 0.16 0.75 -3822 GPR89B G protein-coupled receptor 89B 97440 1 1 1 0 0 0 0 0 1 0 0.16 0.76 -3823 C20orf177 chromosome 20 open reading frame 177 258860 6 4 6 2 1 4 0 0 1 0 0.16 0.76 -3824 ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 138208 2 2 2 1 0 0 2 0 0 0 0.16 0.76 -3825 VAMP8 vesicle-associated membrane protein 8 (endobrevin) 69608 1 1 1 0 0 0 1 0 0 0 0.16 0.76 -3826 KRT72 keratin 72 302512 5 4 5 1 3 1 1 0 0 0 0.16 0.76 -3827 MRPS21 mitochondrial ribosomal protein S21 60928 1 1 1 0 0 1 0 0 0 0 0.16 0.76 -3828 MTERFD2 MTERF domain containing 2 254100 3 3 3 3 1 1 0 0 1 0 0.16 0.76 -3829 POLH polymerase (DNA directed), eta 488768 5 5 5 1 1 3 0 0 1 0 0.16 0.76 -3830 ANKRD16 ankyrin repeat domain 16 206584 3 3 3 2 0 1 1 0 1 0 0.16 0.76 -3831 KRT9 keratin 9 (epidermolytic palmoplantar keratoderma) 393884 5 5 5 1 1 4 0 0 0 0 0.16 0.76 -3832 C13orf18 chromosome 13 open reading frame 18 436376 7 6 7 1 1 3 2 0 1 0 0.16 0.76 -3833 ADRA2A adrenergic, alpha-2A-, receptor 178208 3 3 3 0 1 0 0 0 2 0 0.16 0.76 -3834 SOS2 son of sevenless homolog 2 (Drosophila) 905632 11 9 11 2 3 4 4 0 0 0 0.16 0.76 -3835 HARS2 histidyl-tRNA synthetase 2, mitochondrial (putative) 327264 4 4 3 1 2 1 1 0 0 0 0.16 0.76 -3836 HIF3A hypoxia inducible factor 3, alpha subunit 427256 6 6 6 1 2 2 0 0 2 0 0.16 0.76 -3837 ARSH arylsulfatase family, member H 386400 5 5 5 1 2 3 0 0 0 0 0.16 0.76 -3838 EPB41L1 erythrocyte membrane protein band 4.1-like 1 611520 9 8 9 3 4 2 2 0 1 0 0.16 0.76 -3839 PM20D1 peptidase M20 domain containing 1 349664 5 5 5 1 2 2 1 0 0 0 0.16 0.76 -3840 ZNF571 zinc finger protein 571 412608 6 6 6 0 2 4 0 0 0 0 0.16 0.76 -3841 C17orf104 400264 5 4 5 1 0 3 1 0 1 0 0.16 0.76 -3842 VSIG8 V-set and immunoglobulin domain containing 8 198408 3 3 3 0 0 2 1 0 0 0 0.16 0.76 -3843 CLEC6A C-type lectin domain family 6, member A 146496 1 1 1 1 0 0 1 0 0 0 0.16 0.76 -3844 OXR1 oxidation resistance 1 523936 6 5 6 3 1 4 0 0 1 0 0.16 0.76 -3845 ATP6V1B1 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 (Renal tubular acidosis with deafness) 354884 5 5 5 0 2 2 1 0 0 0 0.16 0.76 -3846 OR2M7 olfactory receptor, family 2, subfamily M, member 7 211232 3 3 3 0 0 2 1 0 0 0 0.16 0.76 -3847 ZFP14 zinc finger protein 14 homolog (mouse) 362432 8 4 7 2 4 2 2 0 0 0 0.16 0.76 -3848 CHMP2A chromatin modifying protein 2A 154336 3 3 3 0 1 2 0 0 0 0 0.16 0.76 -3849 LGALS9 lectin, galactoside-binding, soluble, 9 (galectin 9) 248332 2 2 2 0 1 0 0 0 1 0 0.16 0.76 -3850 MAP1LC3B2 85568 2 2 2 0 1 0 1 0 0 0 0.16 0.76 -3851 ST18 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) 722176 11 7 11 2 2 4 3 0 2 0 0.16 0.76 -3852 ZPBP zona pellucida binding protein 223328 3 3 3 0 1 1 1 0 0 0 0.16 0.76 -3853 PTPN11 protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1) 408576 5 5 5 0 1 4 0 0 0 0 0.16 0.76 -3854 AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) 135408 2 2 2 1 1 0 1 0 0 0 0.16 0.76 -3855 GP5 glycoprotein V (platelet) 314636 7 6 7 4 5 1 1 0 0 0 0.16 0.76 -3856 RAD52 RAD52 homolog (S. cerevisiae) 291424 4 4 4 1 3 1 0 0 0 0 0.16 0.76 -3857 GNAQ guanine nucleotide binding protein (G protein), q polypeptide 233212 4 3 4 0 0 1 1 0 2 0 0.16 0.76 -3858 SH2D4A SH2 domain containing 4A 313824 4 4 4 1 1 0 2 0 1 0 0.16 0.76 -3859 DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 233856 3 3 3 0 0 2 0 0 1 0 0.16 0.76 -3860 OVCH1 ovochymase 1 760328 13 8 13 0 4 7 2 0 0 0 0.16 0.76 -3861 ATL1 386400 4 4 4 0 0 1 1 0 2 0 0.16 0.76 -3862 MUC17 mucin 17, cell surface associated 3031616 23 17 23 5 5 14 3 0 1 0 0.16 0.76 -3863 CABP5 calcium binding protein 5 122304 2 2 2 1 2 0 0 0 0 0 0.16 0.76 -3864 STT3B STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) 515228 6 6 5 0 2 2 2 0 0 0 0.16 0.76 -3865 TMEM218 80640 1 1 1 0 0 0 0 0 1 0 0.16 0.76 -3866 GDF9 growth differentiation factor 9 307552 3 3 3 1 0 2 0 0 1 0 0.16 0.76 -3867 OR5AK2 olfactory receptor, family 5, subfamily AK, member 2 209216 4 3 4 0 1 2 1 0 0 0 0.16 0.76 -3868 ARGFX arginine-fifty homeobox 188832 3 3 3 0 0 2 1 0 0 0 0.16 0.76 -3869 VIT vitrin 481880 9 7 9 2 4 3 1 0 1 0 0.16 0.76 -3870 STAG3L2 stromal antigen 3-like 2 73444 1 1 1 0 0 0 0 0 1 0 0.16 0.76 -3871 FAM149A family with sequence similarity 149, member A 334432 5 5 5 3 2 1 1 0 1 0 0.16 0.76 -3872 C6orf64 chromosome 6 open reading frame 64 124432 2 2 2 0 0 2 0 0 0 0 0.16 0.76 -3873 SPI1 spleen focus forming virus (SFFV) proviral integration oncogene spi1 157080 2 2 2 0 1 0 0 0 1 0 0.16 0.76 -3874 CCDC91 coiled-coil domain containing 91 307776 3 3 3 3 1 1 1 0 0 0 0.16 0.76 -3875 RSPRY1 ring finger and SPRY domain containing 1 400288 4 4 4 2 0 1 2 0 1 0 0.16 0.76 -3876 SOST sclerosteosis 96516 2 2 2 0 1 1 0 0 0 0 0.16 0.76 -3877 PRHOXNB parahox cluster neighbor 40096 1 1 1 0 0 1 0 0 0 0 0.16 0.76 -3878 RFTN2 raftlin family member 2 342008 4 4 4 2 1 2 0 0 1 0 0.16 0.76 -3879 FFAR2 free fatty acid receptor 2 223328 3 3 3 4 2 1 0 0 0 0 0.16 0.76 -3880 IRAK2 interleukin-1 receptor-associated kinase 2 428204 8 6 8 0 2 3 3 0 0 0 0.16 0.76 -3881 CA8 carbonic anhydrase VIII 202720 3 3 3 1 2 1 0 0 0 0 0.16 0.76 -3882 ZNF510 zinc finger protein 510 464128 5 5 5 0 0 4 0 0 1 0 0.16 0.76 -3883 LMCD1 LIM and cysteine-rich domains 1 250920 4 4 4 3 1 1 1 0 1 0 0.16 0.76 -3884 C1orf61 chromosome 1 open reading frame 61 109984 2 2 2 0 1 0 1 0 0 0 0.16 0.76 -3885 GAS7 growth arrest-specific 7 330372 5 5 5 3 3 1 1 0 0 0 0.16 0.76 -3886 KCNJ5 potassium inwardly-rectifying channel, subfamily J, member 5 280924 4 4 4 0 3 1 0 0 0 0 0.16 0.76 -3887 TMEM225 155456 2 2 2 0 1 0 1 0 0 0 0.16 0.76 -3888 PCDHB8 protocadherin beta 8 496160 9 9 8 6 7 0 2 0 0 0 0.16 0.76 -3889 ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 209976 4 3 4 1 3 0 0 0 1 0 0.16 0.76 -3890 POU6F1 POU class 6 homeobox 1 191044 2 2 2 0 1 0 0 0 1 0 0.16 0.76 -3891 EFHC1 EF-hand domain (C-terminal) containing 1 440608 7 5 7 1 3 2 0 0 0 2 0.16 0.76 -3892 UBE2Q1 ubiquitin-conjugating enzyme E2Q (putative) 1 237160 3 3 3 0 1 0 2 0 0 0 0.16 0.76 -3893 RNF122 ring finger protein 122 110208 3 2 3 0 2 1 0 0 0 0 0.16 0.76 -3894 DAAM2 dishevelled associated activator of morphogenesis 2 684548 9 8 9 0 5 3 1 0 0 0 0.16 0.76 -3895 CEP110 centrosomal protein 110kDa 1600704 12 9 12 1 3 5 2 0 2 0 0.17 0.76 -3896 CR1 complement component (3b/4b) receptor 1 (Knops blood group) 1095220 10 9 10 4 4 3 2 0 1 0 0.17 0.76 -3897 MKI67 antigen identified by monoclonal antibody Ki-67 2201248 23 17 23 7 5 6 11 0 1 0 0.17 0.76 -3898 GATA1 GATA binding protein 1 (globin transcription factor 1) 278880 5 5 5 3 3 2 0 0 0 0 0.17 0.76 -3899 GMFG glia maturation factor, gamma 102368 2 2 2 0 0 1 1 0 0 0 0.17 0.76 -3900 CD52 CD52 molecule 43456 1 1 1 0 1 0 0 0 0 0 0.17 0.76 -3901 TMEM202 transmembrane protein 202 188608 2 2 2 2 0 0 1 0 1 0 0.17 0.76 -3902 PGBD4 piggyBac transposable element derived 4 392648 5 5 5 1 3 1 1 0 0 0 0.17 0.76 -3903 MASTL microtubule associated serine/threonine kinase-like 602112 7 6 7 0 1 3 2 0 1 0 0.17 0.76 -3904 HACL1 2-hydroxyacyl-CoA lyase 1 404320 4 4 4 2 1 2 1 0 0 0 0.17 0.77 -3905 NRG3 neuregulin 3 427384 7 5 7 1 3 1 1 1 1 0 0.17 0.77 -3906 SLC31A2 solute carrier family 31 (copper transporters), member 2 98992 1 1 1 0 0 0 0 0 1 0 0.17 0.77 -3907 PBXIP1 pre-B-cell leukemia homeobox interacting protein 1 490112 5 5 5 0 1 1 2 0 1 0 0.17 0.77 -3908 SCEL sciellin 491680 6 5 6 0 1 3 2 0 0 0 0.17 0.77 -3909 GLP2R glucagon-like peptide 2 receptor 383936 5 5 5 2 2 2 0 0 1 0 0.17 0.77 -3910 PTCHD3 patched domain containing 3 519596 6 6 6 5 5 0 1 0 0 0 0.17 0.77 -3911 THEM4 thioesterase superfamily member 4 144256 2 2 2 1 0 0 2 0 0 0 0.17 0.77 -3912 PPP2R2C protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform 325696 4 4 4 3 2 1 1 0 0 0 0.17 0.77 -3913 IGFL3 IGF-like family member 3 88256 1 1 1 0 0 0 1 0 0 0 0.17 0.77 -3914 EFCAB3 EF-hand calcium binding domain 3 305312 3 3 3 2 0 1 1 0 1 0 0.17 0.77 -3915 ZMYM2 zinc finger, MYM-type 2 943768 5 5 5 3 1 1 0 0 3 0 0.17 0.77 -3916 PHIP pleckstrin homology domain interacting protein 1236620 13 8 13 4 4 2 5 0 2 0 0.17 0.77 -3917 GRB2 growth factor receptor-bound protein 2 150976 3 3 3 0 0 2 1 0 0 0 0.17 0.77 -3918 DYRK4 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 359968 4 4 4 1 1 1 2 0 0 0 0.17 0.77 -3919 PODNL1 podocan-like 1 193248 2 2 2 1 1 0 0 0 1 0 0.17 0.77 -3920 TRIM73 tripartite motif-containing 73 98616 1 1 1 0 0 0 0 0 1 0 0.17 0.77 -3921 CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7 342860 5 4 5 1 1 1 2 0 1 0 0.17 0.77 -3922 PRR5-ARHGAP8 354408 5 5 5 0 1 1 2 0 1 0 0.17 0.77 -3923 FAM162B 73696 1 1 1 1 0 0 1 0 0 0 0.17 0.77 -3924 ARSG arylsulfatase G 363328 5 5 4 3 4 1 0 0 0 0 0.17 0.77 -3925 SGMS1 sphingomyelin synthase 1 282688 3 3 3 2 1 0 1 0 1 0 0.17 0.77 -3926 TRIB2 tribbles homolog 2 (Drosophila) 233100 5 5 5 3 2 3 0 0 0 0 0.17 0.77 -3927 CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2 346080 3 3 3 1 1 1 1 0 0 0 0.17 0.77 -3928 ZFAND3 zinc finger, AN1-type domain 3 141792 3 3 3 1 2 0 1 0 0 0 0.17 0.77 -3929 SARDH sarcosine dehydrogenase 568908 8 8 8 4 4 2 2 0 0 0 0.17 0.77 -3930 MTMR12 myotubularin related protein 12 509852 7 6 7 0 3 1 3 0 0 0 0.17 0.77 -3931 OR6C3 olfactory receptor, family 6, subfamily C, member 3 210560 2 2 2 0 0 0 1 0 1 0 0.17 0.77 -3932 TMPRSS11B transmembrane protease, serine 11B 289184 3 3 3 2 0 1 0 0 2 0 0.17 0.77 -3933 CYP2R1 cytochrome P450, family 2, subfamily R, polypeptide 1 329644 4 4 4 0 1 1 1 0 1 0 0.17 0.77 -3934 PKD2 polycystic kidney disease 2 (autosomal dominant) 530432 8 7 8 0 4 2 1 0 1 0 0.17 0.77 -3935 C4orf6 chromosome 4 open reading frame 6 64960 1 1 1 0 0 1 0 0 0 0 0.17 0.77 -3936 CCDC120 coiled-coil domain containing 120 316376 4 4 4 0 2 1 0 0 1 0 0.17 0.77 -3937 ZNF706 zinc finger protein 706 53536 1 1 1 0 0 0 0 0 1 0 0.17 0.77 -3938 AMIGO2 adhesion molecule with Ig-like domain 2 352352 5 4 5 3 2 1 1 0 1 0 0.17 0.77 -3939 PIH1D2 PIH1 domain containing 2 221936 2 2 2 0 0 0 2 0 0 0 0.17 0.77 -3940 PLEKHH2 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 1029952 11 9 11 1 2 5 1 0 3 0 0.17 0.77 -3941 FAM69C 85344 2 2 2 0 1 1 0 0 0 0 0.17 0.77 -3942 FKBP3 FK506 binding protein 3, 25kDa 157472 2 2 2 0 0 1 0 0 1 0 0.17 0.77 -3943 UBL3 ubiquitin-like 3 83776 3 2 3 0 1 1 1 0 0 0 0.17 0.77 -3944 C1orf192 chromosome 1 open reading frame 192 124096 2 2 2 1 0 0 2 0 0 0 0.17 0.77 -3945 CACNG2 calcium channel, voltage-dependent, gamma subunit 2 213080 4 3 4 3 0 0 1 0 1 2 0.17 0.77 -3946 GRXCR1 199136 2 2 2 0 0 0 0 0 2 0 0.17 0.77 -3947 C18orf34 chromosome 18 open reading frame 34 602112 8 5 8 3 0 1 5 0 2 0 0.17 0.77 -3948 F13B coagulation factor XIII, B polypeptide 455616 5 5 5 0 0 3 2 0 0 0 0.17 0.77 -3949 SPANXN4 SPANX family, member N4 38256 2 1 2 0 0 2 0 0 0 0 0.17 0.77 -3950 CEACAM4 carcinoembryonic antigen-related cell adhesion molecule 4 169552 3 3 3 0 2 0 0 0 1 0 0.17 0.77 -3951 KCNJ9 potassium inwardly-rectifying channel, subfamily J, member 9 169260 3 3 3 0 1 1 0 0 1 0 0.17 0.77 -3952 MYO1A myosin IA 725760 12 8 12 0 4 7 1 0 0 0 0.17 0.77 -3953 COX4I1 cytochrome c oxidase subunit IV isoform 1 117656 2 2 2 0 2 0 0 0 0 0 0.17 0.77 -3954 ZNF761 zinc finger protein 761 504672 4 4 4 0 0 2 1 0 1 0 0.17 0.77 -3955 WDR66 WD repeat domain 66 791616 10 7 10 1 4 2 1 0 3 0 0.17 0.77 -3956 OR6Q1 olfactory receptor, family 6, subfamily Q, member 1 214508 3 3 3 0 1 0 2 0 0 0 0.17 0.77 -3957 STAP2 signal transducing adaptor family member 2 264268 5 4 5 1 3 1 0 0 1 0 0.17 0.77 -3958 SSR1 signal sequence receptor, alpha (translocon-associated protein alpha) 197584 3 3 3 0 1 2 0 0 0 0 0.17 0.77 -3959 UPP2 uridine phosphorylase 2 239904 2 2 2 3 0 1 0 0 1 0 0.17 0.77 -3960 BBS9 Bardet-Biedl syndrome 9 616448 6 6 6 1 2 2 2 0 0 0 0.17 0.77 -3961 TSPAN3 tetraspanin 3 161952 2 2 2 0 1 0 0 0 1 0 0.17 0.77 -3962 APAF1 apoptotic peptidase activating factor 1 862624 8 7 8 4 2 3 1 0 2 0 0.17 0.77 -3963 MUC20 mucin 20, cell surface associated 285400 2 2 1 1 0 0 0 0 2 0 0.17 0.77 -3964 MAK male germ cell-associated kinase 430976 4 4 4 2 2 1 0 0 1 0 0.17 0.77 -3965 TGIF2 TGFB-induced factor homeobox 2 161728 3 3 3 0 2 1 0 0 0 0 0.17 0.77 -3966 C1orf26 chromosome 1 open reading frame 26 614544 11 6 11 1 4 2 4 0 1 0 0.17 0.77 -3967 YIPF6 Yip1 domain family, member 6 155472 2 2 2 0 2 0 0 0 0 0 0.17 0.77 -3968 PLEKHA6 pleckstrin homology domain containing, family A member 6 687992 6 6 5 3 1 1 1 0 3 0 0.17 0.77 -3969 IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 196224 2 2 2 2 0 1 1 0 0 0 0.17 0.77 -3970 NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 124544 2 2 2 0 1 0 1 0 0 0 0.17 0.77 -3971 C5orf43 51296 1 1 1 0 0 0 1 0 0 0 0.17 0.77 -3972 PHF5A PHD finger protein 5A 78176 1 1 1 1 0 0 1 0 0 0 0.17 0.77 -3973 GLA galactosidase, alpha 295232 4 3 4 0 0 3 0 0 1 0 0.17 0.77 -3974 LOC81691 537824 5 5 5 1 1 1 2 0 1 0 0.17 0.77 -3975 NIP7 nuclear import 7 homolog (S. cerevisiae) 126112 2 2 2 0 0 1 1 0 0 0 0.17 0.77 -3976 GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon 340472 5 5 5 2 2 3 0 0 0 0 0.17 0.77 -3977 BTBD11 BTB (POZ) domain containing 11 613732 9 8 9 3 2 3 3 0 1 0 0.17 0.77 -3978 DTWD2 DTW domain containing 2 181328 3 3 3 1 1 0 2 0 0 0 0.17 0.77 -3979 MTIF2 mitochondrial translational initiation factor 2 500864 5 5 5 1 0 3 1 0 1 0 0.17 0.77 -3980 IBSP integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) 219072 3 3 3 3 1 1 1 0 0 0 0.17 0.77 -3981 OR5D14 olfactory receptor, family 5, subfamily D, member 14 212576 3 3 3 1 0 3 0 0 0 0 0.17 0.77 -3982 SF3B1 splicing factor 3b, subunit 1, 155kDa 904736 10 9 10 0 5 1 4 0 0 0 0.17 0.77 -3983 ERCC5 excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome)) 811104 11 8 11 4 3 4 3 0 1 0 0.17 0.77 -3984 SAMHD1 SAM domain and HD domain 1 435680 5 5 5 1 3 1 0 1 0 0 0.17 0.77 -3985 TAS2R5 taste receptor, type 2, member 5 202496 2 2 2 2 2 0 0 0 0 0 0.17 0.77 -3986 ZMPSTE24 zinc metallopeptidase (STE24 homolog, S. cerevisiae) 328832 4 4 4 0 2 1 1 0 0 0 0.17 0.77 -3987 KIAA0748 KIAA0748 358304 6 5 6 4 4 1 1 0 0 0 0.17 0.77 -3988 TMEM86A transmembrane protein 86A 159040 3 3 3 1 2 1 0 0 0 0 0.17 0.77 -3989 TFE3 transcription factor binding to IGHM enhancer 3 276896 3 3 3 0 1 0 1 0 1 0 0.17 0.77 -3990 AADAC arylacetamide deacetylase (esterase) 273280 3 3 3 0 0 2 0 0 1 0 0.17 0.77 -3991 C13orf39 181664 2 2 2 1 2 0 0 0 0 0 0.17 0.77 -3992 GLUL glutamate-ammonia ligase (glutamine synthetase) 256704 4 4 4 1 2 1 0 0 1 0 0.17 0.77 -3993 GAST gastrin 70336 1 1 1 1 1 0 0 0 0 0 0.17 0.77 -3994 SLC7A8 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 370048 4 4 4 2 2 0 1 0 1 0 0.17 0.77 -3995 UBR3 ubiquitin protein ligase E3 component n-recognin 3 516096 8 6 8 1 2 3 2 0 1 0 0.17 0.77 -3996 LGSN 346304 4 4 4 1 1 1 1 0 1 0 0.17 0.77 -3997 VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 630372 6 6 6 0 2 2 0 0 2 0 0.17 0.77 -3998 PET112L PET112-like (yeast) 386540 5 5 5 2 1 1 2 0 1 0 0.17 0.77 -3999 ZNF662 zinc finger protein 662 292768 5 3 5 2 0 4 0 0 1 0 0.17 0.77 -4000 CCL23 chemokine (C-C motif) ligand 23 96320 2 2 2 0 2 0 0 0 0 0 0.17 0.77 -4001 LCE2C late cornified envelope 2C 75488 1 1 1 1 1 0 0 0 0 0 0.17 0.77 -4002 ERCC6 excision repair cross-complementing rodent repair deficiency, complementation group 6 1021468 12 10 11 1 4 4 4 0 0 0 0.17 0.77 -4003 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 656432 6 6 6 2 0 2 2 0 2 0 0.17 0.77 -4004 HELB helicase (DNA) B 731088 8 8 8 1 4 2 2 0 0 0 0.17 0.77 -4005 SETD7 SET domain containing (lysine methyltransferase) 7 253792 3 3 3 0 1 1 0 0 1 0 0.17 0.77 -4006 GPR171 G protein-coupled receptor 171 215936 4 4 4 0 2 1 1 0 0 0 0.17 0.77 -4007 C15orf53 chromosome 15 open reading frame 53 122752 1 1 1 0 0 0 0 0 1 0 0.17 0.77 -4008 DCDC2 doublecortin domain containing 2 326144 6 5 6 1 1 3 1 0 1 0 0.17 0.77 -4009 CDADC1 cytidine and dCMP deaminase domain containing 1 343344 4 4 4 2 1 1 2 0 0 0 0.17 0.77 -4010 CELA3A 187784 3 3 3 1 1 0 2 0 0 0 0.17 0.77 -4011 IP6K3 280000 4 4 4 2 3 0 0 0 1 0 0.17 0.77 -4012 AADACL2 arylacetamide deacetylase-like 2 262080 4 3 4 0 0 4 0 0 0 0 0.17 0.77 -4013 KIF3A kinesin family member 3A 485632 7 6 7 0 4 3 0 0 0 0 0.17 0.77 -4014 STAU2 staufen, RNA binding protein, homolog 2 (Drosophila) 331520 3 3 3 2 0 1 1 0 1 0 0.17 0.77 -4015 PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 306880 5 4 5 0 0 2 3 0 0 0 0.17 0.77 -4016 CDC40 cell division cycle 40 homolog (S. cerevisiae) 403200 4 4 4 0 1 1 2 0 0 0 0.17 0.77 -4017 C1orf77 chromosome 1 open reading frame 77 171808 3 3 3 0 1 1 1 0 0 0 0.17 0.77 -4018 LEPROT leptin receptor overlapping transcript 89568 1 1 1 0 1 0 0 0 0 0 0.17 0.77 -4019 CCDC114 coiled-coil domain containing 114 319284 4 4 4 1 2 1 1 0 0 0 0.17 0.77 -4020 ATG4D ATG4 autophagy related 4 homolog D (S. cerevisiae) 272344 4 4 4 0 2 0 1 0 1 0 0.17 0.77 -4021 KLK12 kallikrein-related peptidase 12 171856 3 3 3 1 1 0 2 0 0 0 0.17 0.77 -4022 MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 1032556 13 11 12 3 9 1 1 0 2 0 0.17 0.78 -4023 SLC7A11 solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 348096 3 3 3 0 0 1 1 0 1 0 0.17 0.78 -4024 DUXA double homeobox A 143136 2 2 2 0 0 0 0 0 2 0 0.17 0.78 -4025 RPAIN RPA interacting protein 156352 2 2 2 0 1 0 0 0 1 0 0.17 0.78 -4026 FAM20A family with sequence similarity 20, member A 296412 3 3 3 0 0 1 0 0 2 0 0.17 0.78 -4027 C8orf40 chromosome 8 open reading frame 40 72800 1 1 1 1 0 1 0 0 0 0 0.17 0.78 -4028 APLNR 250292 4 4 4 3 3 1 0 0 0 0 0.17 0.78 -4029 SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 743520 11 10 11 3 8 1 0 1 1 0 0.17 0.78 -4030 BPIL3 bactericidal/permeability-increasing protein-like 3 318304 4 4 4 2 3 0 1 0 0 0 0.17 0.78 -4031 PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D 112672 2 2 2 0 1 1 0 0 0 0 0.17 0.78 -4032 C5orf23 chromosome 5 open reading frame 23 82880 1 1 1 1 0 0 0 0 1 0 0.17 0.78 -4033 TCHP trichoplein, keratin filament binding 330536 5 5 5 0 3 1 0 0 1 0 0.17 0.78 -4034 MCPH1 microcephalin 1 571088 7 6 7 1 1 2 3 0 1 0 0.17 0.78 -4035 LILRA4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4 339808 4 4 4 1 2 2 0 0 0 0 0.17 0.78 -4036 AHNAK2 AHNAK nucleoprotein 2 3368512 37 21 37 12 9 22 3 0 3 0 0.17 0.78 -4037 SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal 436204 6 6 6 2 3 1 1 1 0 0 0.17 0.78 -4038 PDE11A phosphodiesterase 11A 681408 8 7 8 4 1 5 1 0 1 0 0.17 0.78 -4039 BRIP1 BRCA1 interacting protein C-terminal helicase 1 857024 8 7 8 0 2 2 2 0 2 0 0.17 0.78 -4040 VPS26B vacuolar protein sorting 26 homolog B (S. pombe) 231840 3 3 3 1 0 1 1 0 1 0 0.17 0.78 -4041 EHBP1 EH domain binding protein 1 839528 7 7 7 0 4 1 0 0 2 0 0.17 0.78 -4042 ABCA10 ATP-binding cassette, sub-family A (ABC1), member 10 1070720 10 8 10 8 0 7 1 0 2 0 0.17 0.78 -4043 C20orf151 chromosome 20 open reading frame 151 309496 3 3 3 0 2 0 0 0 1 0 0.17 0.78 -4044 RPLP0 ribosomal protein, large, P0 212324 2 2 2 0 0 0 1 0 1 0 0.17 0.78 -4045 CDKL2 cyclin-dependent kinase-like 2 (CDC2-related kinase) 340928 4 4 4 0 1 1 2 0 0 0 0.17 0.78 -4046 TSPAN19 tetraspanin 19 142536 2 2 2 0 0 1 1 0 0 0 0.17 0.78 -4047 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 362516 4 4 4 0 2 0 2 0 0 0 0.17 0.78 -4048 CASC1 cancer susceptibility candidate 1 540736 11 6 10 1 2 5 3 0 1 0 0.17 0.78 -4049 RGL1 ral guanine nucleotide dissociation stimulator-like 1 556416 8 6 8 4 4 2 2 0 0 0 0.17 0.78 -4050 C10orf79 chromosome 10 open reading frame 79 1145284 12 10 12 2 1 5 4 0 2 0 0.17 0.78 -4051 MBTPS1 membrane-bound transcription factor peptidase, site 1 727328 8 6 8 4 3 4 0 0 1 0 0.17 0.78 -4052 PDAP1 PDGFA associated protein 1 123872 2 2 2 0 1 0 0 0 1 0 0.17 0.78 -4053 GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) 181216 3 3 3 1 0 2 1 0 0 0 0.17 0.78 -4054 CCDC144NL 142024 2 2 2 1 0 0 1 1 0 0 0.17 0.78 -4055 KIAA1429 KIAA1429 1242080 14 9 14 2 4 4 2 0 4 0 0.17 0.78 -4056 MARCH7 membrane-associated ring finger (C3HC4) 7 481824 4 4 4 1 2 1 1 0 0 0 0.17 0.78 -4057 SPACA3 sperm acrosome associated 3 149632 3 3 3 0 1 2 0 0 0 0 0.18 0.78 -4058 C9orf86 chromosome 9 open reading frame 86 265052 2 2 2 0 0 0 0 0 2 0 0.18 0.78 -4059 ABAT 4-aminobutyrate aminotransferase 350112 5 5 5 0 2 1 2 0 0 0 0.18 0.78 -4060 OR6C4 olfactory receptor, family 6, subfamily C, member 4 209216 2 2 2 1 0 0 1 0 1 0 0.18 0.78 -4061 CYB5D1 cytochrome b5 domain containing 1 156884 2 2 2 0 1 0 1 0 0 0 0.18 0.78 -4062 ARC activity-regulated cytoskeleton-associated protein 175084 3 3 3 1 1 0 1 0 1 0 0.18 0.78 -4063 PTH parathyroid hormone 79744 2 2 2 0 2 0 0 0 0 0 0.18 0.78 -4064 FAS Fas (TNF receptor superfamily, member 6) 232428 2 2 2 1 0 0 2 0 0 0 0.18 0.78 -4065 MRPS11 mitochondrial ribosomal protein S11 135968 3 3 3 0 3 0 0 0 0 0 0.18 0.78 -4066 SIGLEC7 sialic acid binding Ig-like lectin 7 320768 4 4 4 5 1 3 0 0 0 0 0.18 0.78 -4067 MARVELD3 MARVEL domain containing 3 311672 5 5 5 0 3 2 0 0 0 0 0.18 0.78 -4068 RGMB RGM domain family, member B 267680 3 3 3 0 0 1 0 1 1 0 0.18 0.78 -4069 STMN1 stathmin 1/oncoprotein 18 104384 2 2 2 0 0 1 0 0 1 0 0.18 0.78 -4070 TAS2R39 taste receptor, type 2, member 39 228704 3 3 3 0 0 2 0 0 1 0 0.18 0.78 -4071 LRRC8D leucine rich repeat containing 8 family, member D 578060 5 5 5 5 3 0 1 0 1 0 0.18 0.78 -4072 PRKAG3 protein kinase, AMP-activated, gamma 3 non-catalytic subunit 336672 6 5 6 1 1 3 2 0 0 0 0.18 0.78 -4073 CDKL5 cyclin-dependent kinase-like 5 710752 7 7 7 3 3 3 0 0 1 0 0.18 0.78 -4074 MAGEA6 melanoma antigen family A, 6 182840 3 3 3 0 1 0 1 0 1 0 0.18 0.78 -4075 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast) 752192 6 6 6 3 0 2 4 0 0 0 0.18 0.78 -4076 QRICH1 glutamine-rich 1 530208 7 6 7 1 0 4 3 0 0 0 0.18 0.78 -4077 TM4SF4 transmembrane 4 L six family member 4 140896 2 2 2 1 2 0 0 0 0 0 0.18 0.78 -4078 FAM82A1 395584 5 4 5 1 1 3 0 0 1 0 0.18 0.78 -4079 PRDX6 peroxiredoxin 6 155680 2 2 2 1 0 0 1 0 1 0 0.18 0.78 -4080 TUB tubby homolog (mouse) 387636 5 5 5 1 4 0 0 0 1 0 0.18 0.78 -4081 ZNF615 zinc finger protein 615 495488 9 6 9 1 5 2 1 0 1 0 0.18 0.78 -4082 KCNIP2 Kv channel interacting protein 2 204648 5 4 5 0 3 0 2 0 0 0 0.18 0.78 -4083 GLI3 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 1022140 14 13 14 11 6 6 1 0 1 0 0.18 0.78 -4084 CIB2 calcium and integrin binding family member 2 126952 2 2 2 1 0 1 1 0 0 0 0.18 0.78 -4085 TBX15 T-box 15 340256 4 4 4 3 2 2 0 0 0 0 0.18 0.78 -4086 ZNF80 zinc finger protein 80 185024 3 3 3 6 2 0 1 0 0 0 0.18 0.78 -4087 FBXW4 F-box and WD repeat domain containing 4 226464 3 3 3 1 2 1 0 0 0 0 0.18 0.78 -4088 MYL9 myosin, light chain 9, regulatory 118944 2 2 2 1 1 1 0 0 0 0 0.18 0.78 -4089 ZNF141 zinc finger protein 141 322784 4 4 4 1 1 1 2 0 0 0 0.18 0.78 -4090 ACE2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 557760 9 7 9 1 2 4 3 0 0 0 0.18 0.78 -4091 CRYBG3 704480 8 7 8 1 1 3 4 0 0 0 0.18 0.78 -4092 MACROD1 MACRO domain containing 1 150696 2 2 1 1 0 0 2 0 0 0 0.18 0.78 -4093 NPM3 nucleophosmin/nucleoplasmin, 3 124768 3 3 3 0 1 2 0 0 0 0 0.18 0.78 -4094 ALDH6A1 aldehyde dehydrogenase 6 family, member A1 366576 4 4 4 0 0 2 2 0 0 0 0.18 0.78 -4095 CXorf21 chromosome X open reading frame 21 203840 2 2 2 1 0 1 1 0 0 0 0.18 0.79 -4096 CENPK centromere protein K 189504 2 2 2 1 0 0 1 0 1 0 0.18 0.79 -4097 PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 869568 8 8 8 4 3 1 2 1 1 0 0.18 0.79 -4098 RIMKLB 264544 4 4 4 1 1 3 0 0 0 0 0.18 0.79 -4099 SHISA5 shisa homolog 5 (Xenopus laevis) 149408 1 1 1 0 0 0 0 0 1 0 0.18 0.79 -4100 OR8K5 olfactory receptor, family 8, subfamily K, member 5 207872 2 2 2 1 0 0 2 0 0 0 0.18 0.79 -4101 PJA2 praja 2, RING-H2 motif containing 484512 4 4 4 1 0 3 0 0 1 0 0.18 0.79 -4102 CDC25C cell division cycle 25 homolog C (S. pombe) 330176 4 4 4 1 0 4 0 0 0 0 0.18 0.79 -4103 KPNA6 karyopherin alpha 6 (importin alpha 7) 373408 4 4 4 1 3 0 0 0 1 0 0.18 0.79 -4104 ZNF835 339248 8 8 8 2 7 1 0 0 0 0 0.18 0.79 -4105 DEFB126 defensin, beta 126 77056 1 1 1 0 0 1 0 0 0 0 0.18 0.79 -4106 ZNF418 zinc finger protein 418 457632 5 4 5 1 1 2 0 0 2 0 0.18 0.79 -4107 MTF1 metal-regulatory transcription factor 1 515648 6 5 6 0 3 1 0 0 2 0 0.18 0.79 -4108 PALB2 partner and localizer of BRCA2 809312 8 6 8 2 1 4 1 0 2 0 0.18 0.79 -4109 BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae) 1275652 14 10 14 3 7 3 2 0 2 0 0.18 0.79 -4110 AMTN amelotin 148288 2 2 2 0 2 0 0 0 0 0 0.18 0.79 -4111 CCDC69 coiled-coil domain containing 69 207648 2 2 2 0 0 0 0 0 2 0 0.18 0.79 -4112 TXNDC8 thioredoxin domain containing 8 (spermatozoa) 83328 1 1 1 0 0 0 0 1 0 0 0.18 0.79 -4113 GNA15 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) 230384 3 3 3 2 1 1 1 0 0 0 0.18 0.79 -4114 C1orf35 chromosome 1 open reading frame 35 128856 1 1 1 0 0 0 0 0 1 0 0.18 0.79 -4115 ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 240040 4 4 4 2 1 1 2 0 0 0 0.18 0.79 -4116 RUFY4 RUN and FYVE domain containing 4 233624 2 2 2 2 0 1 1 0 0 0 0.18 0.79 -4117 EIF2B1 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa 213696 2 2 2 0 0 1 0 0 1 0 0.18 0.79 -4118 CTSL2 cathepsin L2 231392 4 3 4 3 1 2 1 0 0 0 0.18 0.79 -4119 PHOX2B paired-like homeobox 2b 177948 5 5 5 0 4 1 0 0 0 0 0.18 0.79 -4120 TMEM200A transmembrane protein 200A 331520 4 4 4 1 1 1 1 0 1 0 0.18 0.79 -4121 CCL8 chemokine (C-C motif) ligand 8 69888 1 1 1 0 0 1 0 0 0 0 0.18 0.79 -4122 OR4D5 olfactory receptor, family 4, subfamily D, member 5 215264 3 3 3 1 0 2 1 0 0 0 0.18 0.79 -4123 KIF4B kinesin family member 4B 830816 11 9 11 3 4 6 1 0 0 0 0.18 0.79 -4124 ZNF558 zinc finger protein 558 275972 2 2 2 1 0 0 0 0 2 0 0.18 0.79 -4125 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 177408 3 3 3 1 1 1 1 0 0 0 0.18 0.79 -4126 OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 189504 2 2 2 0 1 0 0 0 1 0 0.18 0.79 -4127 RNF19B ring finger protein 19B 357504 3 3 3 0 0 1 2 0 0 0 0.18 0.79 -4128 SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 347032 6 5 6 5 4 0 0 2 0 0 0.18 0.79 -4129 STT3A STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) 489664 4 4 4 0 1 0 1 0 2 0 0.18 0.79 -4130 KRTAP13-3 keratin associated protein 13-3 117152 1 1 1 0 0 0 0 0 1 0 0.18 0.79 -4131 OR5D13 olfactory receptor, family 5, subfamily D, member 13 212576 3 3 3 1 1 1 1 0 0 0 0.18 0.79 -4132 ARL15 ADP-ribosylation factor-like 15 127824 2 2 2 0 0 0 2 0 0 0 0.18 0.79 -4133 IQGAP3 IQ motif containing GTPase activating protein 3 1126552 12 11 12 3 5 3 3 0 1 0 0.18 0.79 -4134 C1QC complement component 1, q subcomponent, C chain 142216 3 3 3 0 1 2 0 0 0 0 0.18 0.79 -4135 GRPR gastrin-releasing peptide receptor 261408 3 3 3 1 1 0 2 0 0 0 0.18 0.79 -4136 OR2T27 olfactory receptor, family 2, subfamily T, member 27 207268 2 2 2 2 1 0 0 0 1 0 0.18 0.79 -4137 HFE hemochromatosis 239904 3 3 3 0 2 0 1 0 0 0 0.18 0.79 -4138 RGS7BP regulator of G-protein signaling 7 binding protein 177492 2 2 2 1 0 1 0 0 1 0 0.18 0.79 -4139 GOLT1B golgi transport 1 homolog B (S. cerevisiae) 97888 2 2 2 0 0 2 0 0 0 0 0.18 0.79 -4140 NCBP1 nuclear cap binding protein subunit 1, 80kDa 547288 6 6 6 1 1 3 2 0 0 0 0.18 0.79 -4141 ARHGAP9 Rho GTPase activating protein 9 474236 7 7 7 3 3 2 2 0 0 0 0.18 0.79 -4142 TINAG tubulointerstitial nephritis antigen 330400 4 3 4 2 0 2 1 0 1 0 0.18 0.79 -4143 HNRNPAB 182336 4 3 4 0 1 2 0 0 1 0 0.18 0.79 -4144 C9orf98 chromosome 9 open reading frame 98 307960 3 3 3 1 1 0 1 0 1 0 0.18 0.79 -4145 C18orf32 chromosome 18 open reading frame 32 53536 1 1 1 1 0 0 0 0 1 0 0.18 0.79 -4146 DNAJB5 DnaJ (Hsp40) homolog, subfamily B, member 5 239456 3 3 3 0 2 1 0 0 0 0 0.18 0.79 -4147 RD3 retinal degeneration 3 133504 2 2 2 1 1 1 0 0 0 0 0.18 0.79 -4148 FKBP14 FK506 binding protein 14, 22 kDa 146048 2 2 2 0 0 1 0 0 1 0 0.18 0.79 -4149 AGPAT9 1-acylglycerol-3-phosphate O-acyltransferase 9 303072 4 4 4 0 0 2 1 0 1 0 0.18 0.79 -4150 FAM169B 134176 3 3 2 0 0 3 0 0 0 0 0.18 0.79 -4151 WDR16 WD repeat domain 16 429856 5 5 5 2 3 1 1 0 0 0 0.18 0.79 -4152 RASA3 RAS p21 protein activator 3 532316 7 7 7 1 4 0 2 0 1 0 0.18 0.79 -4153 NDUFC2 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 77752 1 1 1 0 0 0 0 0 1 0 0.18 0.79 -4154 OR4D10 olfactory receptor, family 4, subfamily D, member 10 210560 4 3 4 0 1 0 2 0 1 0 0.18 0.79 -4155 PDIA4 protein disulfide isomerase family A, member 4 419356 5 5 5 1 2 1 2 0 0 0 0.18 0.79 -4156 RNF133 ring finger protein 133 250880 2 2 2 2 0 1 1 0 0 0 0.18 0.79 -4157 TSNAX translin-associated factor X 200928 2 2 2 0 0 0 1 0 1 0 0.18 0.79 -4158 CLN5 ceroid-lipofuscinosis, neuronal 5 238924 2 2 2 0 0 0 1 0 1 0 0.18 0.79 -4159 SNAP47 308784 4 4 4 1 2 1 1 0 0 0 0.18 0.79 -4160 LRRC17 leucine rich repeat containing 17 303072 5 5 5 0 3 1 1 0 0 0 0.18 0.79 -4161 RPL10A ribosomal protein L10a 145152 2 2 2 0 0 1 0 0 1 0 0.18 0.79 -4162 PTPDC1 protein tyrosine phosphatase domain containing 1 569632 6 5 4 1 3 2 0 1 0 0 0.18 0.79 -4163 MBNL1 muscleblind-like (Drosophila) 292768 4 4 4 1 1 2 1 0 0 0 0.18 0.79 -4164 ZNF385A zinc finger protein 385A 212136 4 4 4 0 0 4 0 0 0 0 0.18 0.79 -4165 CNOT8 CCR4-NOT transcription complex, subunit 8 202272 2 2 2 0 0 0 1 0 1 0 0.18 0.79 -4166 ZNF880 109312 1 1 1 1 0 0 1 0 0 0 0.18 0.79 -4167 CDK17 362992 4 3 4 1 0 1 1 0 2 0 0.18 0.79 -4168 RIMKLA 230496 3 3 3 0 2 1 0 0 0 0 0.18 0.79 -4169 CD109 CD109 molecule 983808 13 9 13 3 2 6 3 1 1 0 0.18 0.79 -4170 USP16 ubiquitin specific peptidase 16 567700 5 5 5 1 1 1 2 0 1 0 0.18 0.79 -4171 UBE3C ubiquitin protein ligase E3C 743176 9 7 9 3 2 2 3 0 2 0 0.18 0.79 -4172 LARGE like-glycosyltransferase 514528 7 7 7 6 5 2 0 0 0 0 0.18 0.79 -4173 ZNF132 zinc finger protein 132 468260 6 5 6 0 0 3 3 0 0 0 0.18 0.79 -4174 KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) 340704 5 5 5 3 0 4 1 0 0 0 0.18 0.79 -4175 ASB18 ankyrin repeat and SOCS box-containing 18 133672 2 2 2 1 0 1 1 0 0 0 0.18 0.79 -4176 LNP1 leukemia NUP98 fusion partner 1 122976 2 2 2 0 0 2 0 0 0 0 0.18 0.79 -4177 C1orf43 chromosome 1 open reading frame 43 176960 2 2 2 0 0 0 2 0 0 0 0.18 0.79 -4178 TPP2 tripeptidyl peptidase II 860608 10 7 10 2 1 1 6 0 2 0 0.18 0.79 -4179 PLOD3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 475996 4 4 3 1 0 0 1 0 3 0 0.18 0.79 -4180 PRLR prolactin receptor 425824 4 4 4 1 0 1 3 0 0 0 0.18 0.79 -4181 IL12RB2 interleukin 12 receptor, beta 2 593376 6 6 6 2 1 3 2 0 0 0 0.18 0.79 -4182 GATS 113792 2 2 2 0 1 1 0 0 0 0 0.18 0.79 -4183 ACOT8 acyl-CoA thioesterase 8 220416 3 3 3 0 1 1 0 0 1 0 0.18 0.79 -4184 MAP2K6 mitogen-activated protein kinase kinase 6 235872 3 3 3 2 0 2 0 0 1 0 0.18 0.79 -4185 FEN1 flap structure-specific endonuclease 1 255920 4 4 4 0 0 2 1 1 0 0 0.18 0.79 -4186 SIGLEC9 sialic acid binding Ig-like lectin 9 318080 4 4 4 2 1 1 1 1 0 0 0.18 0.79 -4187 OLFM4 olfactomedin 4 347872 4 4 3 1 0 3 1 0 0 0 0.18 0.79 -4188 PRSS48 225568 4 3 4 0 2 0 2 0 0 0 0.18 0.79 -4189 PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 703360 6 5 5 0 0 1 2 0 3 0 0.18 0.79 -4190 PPP1R15A protein phosphatase 1, regulatory (inhibitor) subunit 15A 455392 5 5 5 1 0 3 1 0 1 0 0.18 0.79 -4191 USP15 ubiquitin specific peptidase 15 646584 8 6 8 0 3 2 2 0 1 0 0.18 0.79 -4192 TCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) 510440 4 4 4 0 0 1 1 0 2 0 0.18 0.79 -4193 ZSCAN4 zinc finger and SCAN domain containing 4 294336 4 4 4 1 0 2 2 0 0 0 0.18 0.79 -4194 CCDC11 coiled-coil domain containing 11 353248 6 4 6 0 2 1 2 0 1 0 0.18 0.79 -4195 PRPH2 peripherin 2 (retinal degeneration, slow) 235872 4 4 4 2 4 0 0 0 0 0 0.18 0.79 -4196 DSG3 desmoglein 3 (pemphigus vulgaris antigen) 686336 8 7 8 2 3 2 1 0 2 0 0.18 0.79 -4197 OPRM1 opioid receptor, mu 1 337288 3 3 3 1 2 1 0 0 0 0 0.18 0.79 -4198 C9orf21 chromosome 9 open reading frame 21 104088 1 1 1 0 0 0 0 0 1 0 0.18 0.79 -4199 ZBTB7C zinc finger and BTB domain containing 7C 364508 6 6 6 1 5 1 0 0 0 0 0.18 0.79 -4200 KCNJ12 potassium inwardly-rectifying channel, subfamily J, member 12 274568 3 3 3 3 2 0 0 0 1 0 0.18 0.79 -4201 C6orf62 chromosome 6 open reading frame 62 159040 2 2 2 0 0 1 1 0 0 0 0.18 0.79 -4202 ECM2 extracellular matrix protein 2, female organ and adipocyte specific 478464 4 4 4 1 1 2 1 0 0 0 0.18 0.79 -4203 DDX1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 518528 4 4 4 0 1 1 1 0 1 0 0.18 0.79 -4204 IFNA6 interferon, alpha 6 128128 3 2 3 0 0 3 0 0 0 0 0.19 0.79 -4205 TRPM3 transient receptor potential cation channel, subfamily M, member 3 1197728 12 12 12 7 5 5 2 0 0 0 0.19 0.79 -4206 HINFP 354144 4 4 4 0 2 1 1 0 0 0 0.19 0.79 -4207 GBP1 guanylate binding protein 1, interferon-inducible, 67kDa 407456 5 5 5 3 3 0 2 0 0 0 0.19 0.79 -4208 DPY19L1 dpy-19-like 1 (C. elegans) 455392 7 5 6 0 0 4 3 0 0 0 0.19 0.79 -4209 INPP5K 297976 5 5 4 2 4 1 0 0 0 0 0.19 0.79 -4210 NTN1 netrin 1 239904 5 5 5 0 1 3 1 0 0 0 0.19 0.79 -4211 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 415660 6 6 6 0 2 3 1 0 0 0 0.19 0.79 -4212 NMUR1 neuromedin U receptor 1 286888 4 4 4 0 1 2 0 0 1 0 0.19 0.79 -4213 C4orf27 chromosome 4 open reading frame 27 235284 3 3 3 0 1 1 1 0 0 0 0.19 0.79 -4214 ABLIM3 actin binding LIM protein family, member 3 480256 5 5 5 1 0 3 1 0 1 0 0.19 0.79 -4215 MORF4L2 mortality factor 4 like 2 195104 2 2 2 2 0 1 1 0 0 0 0.19 0.79 -4216 IFNA4 interferon, alpha 4 128576 2 2 2 0 0 2 0 0 0 0 0.19 0.79 -4217 OR51M1 olfactory receptor, family 51, subfamily M, member 1 220640 3 3 3 2 0 1 2 0 0 0 0.19 0.79 -4218 MUT methylmalonyl Coenzyme A mutase 515424 4 4 4 0 0 1 0 0 3 0 0.19 0.79 -4219 UBTD1 ubiquitin domain containing 1 107728 2 2 2 0 0 2 0 0 0 0 0.19 0.79 -4220 ZNF300 zinc finger protein 300 412384 3 3 3 0 1 0 1 0 1 0 0.19 0.79 -4221 CD3G CD3g molecule, gamma (CD3-TCR complex) 120328 2 2 2 0 1 1 0 0 0 0 0.19 0.79 -4222 GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3 237216 3 3 3 2 1 0 1 0 1 0 0.19 0.79 -4223 PLP1 proteolipid protein 1 (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated) 193088 2 2 2 0 0 1 1 0 0 0 0.19 0.79 -4224 SSTR1 somatostatin receptor 1 257684 5 5 5 1 1 2 2 0 0 0 0.19 0.79 -4225 C1orf112 chromosome 1 open reading frame 112 593600 5 5 5 3 1 0 2 0 2 0 0.19 0.79 -4226 USP48 ubiquitin specific peptidase 48 694432 6 6 6 5 3 1 1 0 1 0 0.19 0.79 -4227 DMC1 DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) 240800 4 3 4 1 2 1 0 0 1 0 0.19 0.79 -4228 ZNF335 zinc finger protein 335 883932 8 7 8 5 1 3 2 0 0 2 0.19 0.79 -4229 HERC6 hect domain and RLD 6 644504 7 7 7 3 4 1 1 0 1 0 0.19 0.79 -4230 CDK4 cyclin-dependent kinase 4 210560 3 3 3 1 2 0 1 0 0 0 0.19 0.79 -4231 TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 159152 3 3 3 1 2 1 0 0 0 0 0.19 0.79 -4232 ZP1 zona pellucida glycoprotein 1 (sperm receptor) 440160 7 7 7 3 2 4 1 0 0 0 0.19 0.79 -4233 SLC12A6 solute carrier family 12 (potassium/chloride transporters), member 6 823200 8 6 8 1 0 1 2 0 5 0 0.19 0.79 -4234 GCG glucagon 124616 2 2 2 1 0 2 0 0 0 0 0.19 0.79 -4235 TAB3 485408 4 4 4 2 1 1 0 0 2 0 0.19 0.79 -4236 SYN3 synapsin III 400856 4 4 4 1 2 1 1 0 0 0 0.19 0.80 -4237 B9D1 B9 protein domain 1 129024 2 2 2 1 2 0 0 0 0 0 0.19 0.80 -4238 C1orf100 chromosome 1 open reading frame 100 103040 2 2 2 0 1 0 1 0 0 0 0.19 0.80 -4239 SEPT11 septin 11 290976 3 3 3 0 1 1 0 0 1 0 0.19 0.80 -4240 TMEM215 152264 2 2 2 1 0 2 0 0 0 0 0.19 0.80 -4241 UBXN7 339136 4 4 4 1 1 0 2 0 1 0 0.19 0.80 -4242 EDEM2 ER degradation enhancer, mannosidase alpha-like 2 398944 4 4 4 0 0 2 1 0 1 0 0.19 0.80 -4243 PAK7 p21(CDKN1A)-activated kinase 7 491008 7 6 7 3 4 2 0 0 1 0 0.19 0.80 -4244 NRG4 neuregulin 4 82432 1 1 1 0 1 0 0 0 0 0 0.19 0.80 -4245 RPL39 ribosomal protein L39 36680 1 1 1 1 1 0 0 0 0 0 0.19 0.80 -4246 CTSD cathepsin D 253092 3 3 3 1 1 0 1 0 1 0 0.19 0.80 -4247 CCDC9 coiled-coil domain containing 9 335940 5 5 5 0 1 2 1 0 1 0 0.19 0.80 -4248 ZNF790 zinc finger protein 790 431648 10 5 10 4 1 6 1 0 2 0 0.19 0.80 -4249 TP53INP1 tumor protein p53 inducible nuclear protein 1 170464 2 2 2 1 1 1 0 0 0 0 0.19 0.80 -4250 SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary) 335464 5 5 5 2 1 1 3 0 0 0 0.19 0.80 -4251 SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 338508 4 4 4 1 0 3 1 0 0 0 0.19 0.80 -4252 PGM3 phosphoglucomutase 3 375648 5 4 5 0 0 4 1 0 0 0 0.19 0.80 -4253 NIPAL2 227584 2 2 2 0 0 1 1 0 0 0 0.19 0.80 -4254 CLDN6 claudin 6 122864 2 2 2 0 0 1 0 0 1 0 0.19 0.80 -4255 CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 201824 2 2 2 0 0 0 2 0 0 0 0.19 0.80 -4256 SCGB2A1 secretoglobin, family 2A, member 1 67200 1 1 1 1 0 1 0 0 0 0 0.19 0.80 -4257 PROK1 prokineticin 1 73920 1 1 1 0 0 1 0 0 0 0 0.19 0.80 -4258 PRAMEF4 PRAME family member 4 278208 3 3 2 1 2 0 1 0 0 0 0.19 0.80 -4259 ZNF570 zinc finger protein 570 364448 5 3 5 1 0 4 0 0 1 0 0.19 0.80 -4260 GGCT 130592 2 2 2 0 0 1 1 0 0 0 0.19 0.80 -4261 CDS2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 297696 4 4 4 1 2 1 1 0 0 0 0.19 0.80 -4262 C1orf49 chromosome 1 open reading frame 49 167552 3 3 3 0 2 1 0 0 0 0 0.19 0.80 -4263 S100A13 S100 calcium binding protein A13 68320 1 1 1 0 1 0 0 0 0 0 0.19 0.80 -4264 WFDC8 WAP four-disulfide core domain 8 168000 2 2 2 1 1 1 0 0 0 0 0.19 0.80 -4265 ACOT13 97440 1 1 1 0 0 1 0 0 0 0 0.19 0.80 -4266 MDH1B malate dehydrogenase 1B, NAD (soluble) 359520 6 5 6 1 2 3 1 0 0 0 0.19 0.80 -4267 ZNF37A zinc finger protein 37A 381248 7 4 7 0 0 4 2 0 1 0 0.19 0.80 -4268 SERP1 stress-associated endoplasmic reticulum protein 1 47712 1 1 1 0 0 1 0 0 0 0 0.19 0.80 -4269 STIP1 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) 375200 3 3 2 0 0 0 0 0 3 0 0.19 0.80 -4270 GJB1 gap junction protein, beta 1, 32kDa 176292 3 3 3 0 2 0 1 0 0 0 0.19 0.80 -4271 OR9K2 olfactory receptor, family 9, subfamily K, member 2 226688 3 3 3 0 0 1 2 0 0 0 0.19 0.80 -4272 LIPT1 lipoyltransferase 1 252224 4 4 4 1 0 4 0 0 0 0 0.19 0.80 -4273 CD6 CD6 molecule 339104 3 3 3 1 1 0 0 0 2 0 0.19 0.80 -4274 GLT1D1 glycosyltransferase 1 domain containing 1 170464 3 2 3 1 1 0 1 0 1 0 0.19 0.80 -4275 KRT13 keratin 13 300520 4 4 4 2 2 0 2 0 0 0 0.19 0.80 -4276 CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6 340704 6 5 6 1 2 3 0 0 1 0 0.19 0.80 -4277 ADRA1A adrenergic, alpha-1A-, receptor 344288 5 5 5 5 2 0 3 0 0 0 0.19 0.80 -4278 PRAP1 proline-rich acidic protein 1 85792 1 1 1 0 0 0 0 0 1 0 0.19 0.80 -4279 ETFA electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) 225568 3 3 3 0 1 2 0 0 0 0 0.19 0.80 -4280 PDCL3 phosducin-like 3 166656 2 2 2 0 1 1 0 0 0 0 0.19 0.80 -4281 CAMK2D calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 359672 3 3 3 0 0 2 1 0 0 0 0.19 0.80 -4282 PGPEP1L 126016 3 3 3 1 2 1 0 0 0 0 0.19 0.80 -4283 SLC22A10 solute carrier family 22, member 10 373184 4 4 4 0 2 2 0 0 0 0 0.19 0.80 -4284 EPX eosinophil peroxidase 491904 7 7 7 2 5 1 1 0 0 0 0.19 0.80 -4285 PIGB phosphatidylinositol glycan anchor biosynthesis, class B 354744 3 3 3 0 0 1 1 0 1 0 0.19 0.80 -4286 NUPL2 nucleoporin like 2 291200 3 3 3 0 0 2 1 0 0 0 0.19 0.80 -4287 WAC WW domain containing adaptor with coiled-coil 446368 5 5 5 1 1 3 1 0 0 0 0.19 0.80 -4288 ABLIM1 actin binding LIM protein 1 574608 6 6 6 1 3 0 2 0 1 0 0.19 0.80 -4289 METTL5 methyltransferase like 5 147392 2 2 2 3 0 1 0 0 1 0 0.19 0.80 -4290 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta 234220 3 3 3 0 2 0 0 0 1 0 0.19 0.80 -4291 TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 291984 6 4 6 1 4 0 1 0 1 0 0.19 0.80 -4292 SCAMP5 secretory carrier membrane protein 5 163968 2 2 2 0 0 1 1 0 0 0 0.19 0.80 -4293 TUFT1 tuftelin 1 272088 3 3 2 1 2 1 0 0 0 0 0.19 0.80 -4294 TMEM164 transmembrane protein 164 205632 3 3 3 2 2 1 0 0 0 0 0.19 0.80 -4295 ATP11A ATPase, class VI, type 11A 835660 8 8 8 4 4 1 1 0 2 0 0.19 0.80 -4296 EXOC3L2 exocyst complex component 3-like 2 236696 4 4 4 1 3 1 0 0 0 0 0.19 0.80 -4297 HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 127652 1 1 1 0 0 0 0 0 1 0 0.19 0.80 -4298 GYPE glycophorin E 55776 1 1 1 1 0 0 1 0 0 0 0.19 0.80 -4299 ASF1A ASF1 anti-silencing function 1 homolog A (S. cerevisiae) 116480 2 2 2 0 1 1 0 0 0 0 0.19 0.80 -4300 C17orf75 chromosome 17 open reading frame 75 262416 3 3 3 0 0 2 1 0 0 0 0.19 0.80 -4301 VSX1 visual system homeobox 1 147240 2 2 2 1 0 1 0 0 1 0 0.19 0.80 -4302 SPTLC3 serine palmitoyltransferase, long chain base subunit 3 382368 5 5 5 2 2 1 2 0 0 0 0.19 0.80 -4303 IL7 interleukin 7 124992 2 2 2 0 0 1 1 0 0 0 0.19 0.80 -4304 ZNF253 zinc finger protein 253 339584 4 3 4 2 1 1 0 0 2 0 0.19 0.80 -4305 RALGPS1 Ral GEF with PH domain and SH3 binding motif 1 391104 4 4 4 2 1 2 0 0 1 0 0.19 0.80 -4306 AIM1 absent in melanoma 1 1112076 10 9 10 2 4 1 2 0 1 2 0.19 0.80 -4307 SLIT3 slit homolog 3 (Drosophila) 997616 9 9 9 6 6 1 0 0 2 0 0.19 0.80 -4308 PIGR polymeric immunoglobulin receptor 516564 7 6 6 0 2 3 1 0 1 0 0.19 0.80 -4309 DMXL1 Dmx-like 1 2072120 18 13 18 2 4 9 4 0 1 0 0.19 0.80 -4310 FAM196A 304248 4 4 4 1 2 1 0 0 1 0 0.19 0.80 -4311 RUNX2 runt-related transcription factor 2 321608 5 5 5 0 0 2 2 0 1 0 0.19 0.80 -4312 C9orf11 chromosome 9 open reading frame 11 205408 2 2 2 0 0 1 0 0 1 0 0.19 0.80 -4313 HAPLN4 hyaluronan and proteoglycan link protein 4 162260 4 4 4 1 3 0 0 0 1 0 0.19 0.80 -4314 SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 420452 7 6 7 3 3 2 2 0 0 0 0.19 0.80 -4315 FEZ1 fasciculation and elongation protein zeta 1 (zygin I) 273056 5 4 5 0 1 3 1 0 0 0 0.19 0.80 -4316 ETNK2 ethanolamine kinase 2 200088 2 2 2 2 1 0 0 0 1 0 0.19 0.80 -4317 MYLK2 myosin light chain kinase 2 388024 3 3 3 1 2 0 0 0 1 0 0.19 0.80 -4318 TSTD2 355488 3 3 3 0 1 1 0 0 1 0 0.19 0.80 -4319 KIAA0146 KIAA0146 555008 6 6 6 0 0 3 3 0 0 0 0.19 0.80 -4320 STRC stereocilin 516240 3 3 3 0 0 1 1 0 1 0 0.19 0.80 -4321 CNR1 cannabinoid receptor 1 (brain) 318752 5 5 5 2 3 2 0 0 0 0 0.19 0.80 -4322 KYNU kynureninase (L-kynurenine hydrolase) 330624 6 4 6 3 2 2 2 0 0 0 0.19 0.80 -4323 FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 244160 4 4 4 0 3 1 0 0 0 0 0.19 0.80 -4324 SMYD5 SMYD family member 5 291368 6 5 6 0 4 1 1 0 0 0 0.19 0.80 -4325 C5orf41 chromosome 5 open reading frame 41 437976 6 5 6 0 2 3 0 0 1 0 0.19 0.80 -4326 INTS7 integrator complex subunit 7 665056 8 7 8 0 2 3 3 0 0 0 0.19 0.80 -4327 MED31 mediator complex subunit 31 92288 1 1 1 0 0 0 1 0 0 0 0.19 0.80 -4328 SPRED2 sprouty-related, EVH1 domain containing 2 288792 6 6 6 5 5 1 0 0 0 0 0.19 0.80 -4329 APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C 131936 3 2 3 0 2 0 0 0 1 0 0.19 0.80 -4330 KCNC1 potassium voltage-gated channel, Shaw-related subfamily, member 1 310072 5 5 5 4 3 1 0 0 1 0 0.19 0.80 -4331 LCT lactase 1305892 20 15 20 6 8 7 5 0 0 0 0.19 0.80 -4332 BMP7 bone morphogenetic protein 7 (osteogenic protein 1) 256520 6 5 6 1 5 1 0 0 0 0 0.19 0.80 -4333 C7orf47 chromosome 7 open reading frame 47 125652 1 1 1 1 0 0 0 0 1 0 0.19 0.80 -4334 SHC1 SHC (Src homology 2 domain containing) transforming protein 1 386316 3 3 2 0 0 1 0 0 2 0 0.19 0.80 -4335 RHBDL3 rhomboid, veinlet-like 3 (Drosophila) 254044 5 4 5 0 3 0 1 0 1 0 0.19 0.80 -4336 SCGB3A1 secretoglobin, family 3A, member 1 47508 1 1 1 0 0 0 1 0 0 0 0.19 0.80 -4337 KRTAP10-6 keratin associated protein 10-6 246848 3 3 3 0 0 3 0 0 0 0 0.19 0.80 -4338 ZNF200 zinc finger protein 200 269696 3 3 3 1 0 2 1 0 0 0 0.19 0.80 -4339 NUP35 nucleoporin 35kDa 227808 2 2 2 1 1 0 0 0 1 0 0.19 0.80 -4340 NTS neurotensin 118496 2 2 2 0 0 2 0 0 0 0 0.19 0.80 -4341 ECT2 epithelial cell transforming sequence 2 oncogene 614656 5 5 5 0 2 2 0 0 1 0 0.19 0.80 -4342 C3orf43 chromosome 3 open reading frame 43 147168 1 1 1 1 0 0 0 0 1 0 0.19 0.80 -4343 PMFBP1 polyamine modulated factor 1 binding protein 1 697536 6 6 6 1 1 3 2 0 0 0 0.19 0.80 -4344 ESRRA estrogen-related receptor alpha 269336 3 3 3 1 1 1 0 1 0 0 0.19 0.80 -4345 KIRREL2 kin of IRRE like 2 (Drosophila) 489840 6 6 6 1 1 2 2 0 1 0 0.19 0.80 -4346 ZNF346 zinc finger protein 346 173392 3 3 3 1 0 2 1 0 0 0 0.19 0.80 -4347 LIN9 lin-9 homolog (C. elegans) 389088 6 5 6 0 4 1 1 0 0 0 0.19 0.80 -4348 TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa 567532 6 6 6 1 2 2 2 0 0 0 0.19 0.80 -4349 LYPD4 LY6/PLAUR domain containing 4 169568 2 2 2 2 1 1 0 0 0 0 0.19 0.80 -4350 CDH24 cadherin-like 24 445896 4 4 4 2 0 0 1 0 3 0 0.19 0.80 -4351 STBD1 starch binding domain 1 241272 2 2 2 0 0 2 0 0 0 0 0.19 0.80 -4352 ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 365120 5 5 5 0 0 4 1 0 0 0 0.19 0.80 -4353 SPN sialophorin (leukosialin, CD43) 242816 2 2 2 0 0 0 0 0 2 0 0.19 0.80 -4354 EXOC4 exocyst complex component 4 673344 7 6 7 1 2 3 1 0 1 0 0.19 0.80 -4355 MFAP5 microfibrillar associated protein 5 124992 4 2 4 0 1 3 0 0 0 0 0.19 0.80 -4356 SLC4A5 solute carrier family 4, sodium bicarbonate cotransporter, member 5 788032 10 9 10 2 3 4 2 1 0 0 0.19 0.80 -4357 LPIN1 lipin 1 613876 11 9 11 3 6 3 2 0 0 0 0.19 0.81 -4358 AGTPBP1 ATP/GTP binding protein 1 817876 8 5 8 1 1 1 4 0 2 0 0.19 0.81 -4359 OR5B3 olfactory receptor, family 5, subfamily B, member 3 212576 3 3 3 1 0 2 1 0 0 0 0.19 0.81 -4360 CSRNP3 397376 5 5 5 3 1 3 1 0 0 0 0.19 0.81 -4361 SFRS15 splicing factor, arginine/serine-rich 15 786520 8 8 8 3 5 1 1 0 1 0 0.19 0.81 -4362 DHRS2 dehydrogenase/reductase (SDR family) member 2 209440 3 3 3 1 2 0 0 0 1 0 0.19 0.81 -4363 CALML5 calmodulin-like 5 76264 2 2 2 0 2 0 0 0 0 0 0.20 0.81 -4364 ANXA4 annexin A4 227136 4 4 4 0 1 2 1 0 0 0 0.20 0.81 -4365 XRN1 5'-3' exoribonuclease 1 1184736 8 8 8 3 2 3 1 1 1 0 0.20 0.81 -4366 REN renin 282464 5 4 5 1 3 2 0 0 0 0 0.20 0.81 -4367 GHR growth hormone receptor 437472 6 4 6 2 1 4 1 0 0 0 0.20 0.81 -4368 PSMA3 proteasome (prosome, macropain) subunit, alpha type, 3 181888 3 3 3 0 1 1 1 0 0 0 0.20 0.81 -4369 SULT6B1 sulfotransferase family, cytosolic, 6B, member 1 185024 3 3 3 0 0 1 1 0 1 0 0.20 0.81 -4370 MED12L mediator complex subunit 12-like 1474760 17 11 17 7 5 6 3 0 3 0 0.20 0.81 -4371 ZFYVE9 zinc finger, FYVE domain containing 9 975696 10 8 10 2 4 2 2 0 2 0 0.20 0.81 -4372 FAM19A2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 92288 2 2 2 0 1 1 0 0 0 0 0.20 0.81 -4373 SEMG1 semenogelin I 312928 3 3 3 0 0 1 2 0 0 0 0.20 0.81 -4374 HLCS holocarboxylase synthetase (biotin-(proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)) ligase) 492996 6 6 4 2 4 1 0 0 1 0 0.20 0.81 -4375 ST20 suppressor of tumorigenicity 20 44576 1 1 1 0 1 0 0 0 0 0 0.20 0.81 -4376 RCVRN recoverin 137760 3 3 3 3 2 1 0 0 0 0 0.20 0.81 -4377 IL1F5 interleukin 1 family, member 5 (delta) 108416 2 2 2 1 1 1 0 0 0 0 0.20 0.81 -4378 ANKRD6 ankyrin repeat domain 6 478896 5 5 4 2 4 0 1 0 0 0 0.20 0.81 -4379 HCN4 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 556904 9 9 8 4 8 0 0 0 1 0 0.20 0.81 -4380 EFTUD2 elongation factor Tu GTP binding domain containing 2 678048 6 6 6 1 3 1 2 0 0 0 0.20 0.81 -4381 CSNK1D casein kinase 1, delta 248672 4 4 4 0 1 1 1 1 0 0 0.20 0.81 -4382 WNT11 wingless-type MMTV integration site family, member 11 169572 3 3 3 2 1 1 1 0 0 0 0.20 0.81 -4383 GPN3 200928 2 2 2 1 1 0 1 0 0 0 0.20 0.81 -4384 BARHL2 BarH-like homeobox 2 233872 4 3 4 1 1 0 2 0 1 0 0.20 0.81 -4385 LRRC49 leucine rich repeat containing 49 476000 6 5 6 0 3 2 1 0 0 0 0.20 0.81 -4386 TNIK TRAF2 and NCK interacting kinase 909208 12 7 11 1 1 5 1 1 0 4 0.20 0.81 -4387 ATR ataxia telangiectasia and Rad3 related 1819552 18 12 18 3 9 5 1 0 3 0 0.20 0.81 -4388 AKAP7 A kinase (PRKA) anchor protein 7 254240 3 2 3 0 0 0 2 0 1 0 0.20 0.81 -4389 MCART1 mitochondrial carrier triple repeat 1 201152 2 2 2 1 1 0 0 0 1 0 0.20 0.81 -4390 HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 218848 2 2 2 0 1 0 0 0 1 0 0.20 0.81 -4391 SLC20A1 solute carrier family 20 (phosphate transporter), member 1 465920 4 4 4 1 0 2 1 0 1 0 0.20 0.81 -4392 TM9SF3 transmembrane 9 superfamily member 3 386176 5 4 5 1 2 2 0 0 1 0 0.20 0.81 -4393 NPEPPS aminopeptidase puromycin sensitive 568196 6 5 6 0 2 1 1 0 2 0 0.20 0.81 -4394 ALDH8A1 aldehyde dehydrogenase 8 family, member A1 334208 4 4 4 0 2 1 0 0 1 0 0.20 0.81 -4395 FYTTD1 forty-two-three domain containing 1 213444 3 3 3 0 1 1 0 0 1 0 0.20 0.81 -4396 TC2N tandem C2 domains, nuclear 339808 4 4 4 2 1 0 3 0 0 0 0.20 0.81 -4397 ETV6 ets variant gene 6 (TEL oncogene) 311584 5 5 4 1 3 1 0 1 0 0 0.20 0.81 -4398 OR4K2 olfactory receptor, family 4, subfamily K, member 2 212576 4 3 4 2 0 3 1 0 0 0 0.20 0.81 -4399 NHLRC3 NHL repeat containing 3 240128 3 3 3 0 0 3 0 0 0 0 0.20 0.81 -4400 MRPS31 mitochondrial ribosomal protein S31 272384 2 2 1 0 0 0 2 0 0 0 0.20 0.81 -4401 RBM24 RNA binding motif protein 24 121044 2 2 2 1 1 0 0 0 1 0 0.20 0.81 -4402 FERMT2 fermitin family homolog 2 (Drosophila) 472416 3 3 3 1 0 0 2 0 1 0 0.20 0.81 -4403 CCDC23 coiled-coil domain containing 23 46816 1 1 1 0 0 1 0 0 0 0 0.20 0.81 -4404 PSMB2 proteasome (prosome, macropain) subunit, beta type, 2 141120 2 2 2 0 0 0 1 1 0 0 0.20 0.81 -4405 TEX12 testis expressed 12 86912 2 1 2 0 0 1 1 0 0 0 0.20 0.81 -4406 ZNF182 zinc finger protein 182 427584 7 6 7 1 1 6 0 0 0 0 0.20 0.81 -4407 GAL3ST4 galactose-3-O-sulfotransferase 4 315040 4 3 4 2 1 2 0 0 1 0 0.20 0.81 -4408 GXYLT2 242144 3 3 3 1 0 2 0 0 1 0 0.20 0.81 -4409 SLC18A2 solute carrier family 18 (vesicular monoamine), member 2 351104 4 4 4 4 1 2 0 1 0 0 0.20 0.81 -4410 CEACAM20 carcinoembryonic antigen-related cell adhesion molecule 20 401552 4 4 4 3 1 3 0 0 0 0 0.20 0.81 -4411 SH3BP5 SH3-domain binding protein 5 (BTK-associated) 292808 3 3 3 0 1 0 1 0 1 0 0.20 0.81 -4412 ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 885024 11 8 11 2 0 5 4 0 2 0 0.20 0.81 -4413 IMPA2 inositol(myo)-1(or 4)-monophosphatase 2 178976 2 2 2 0 1 0 0 0 1 0 0.20 0.81 -4414 TMEM108 transmembrane protein 108 390656 3 3 3 2 1 1 0 1 0 0 0.20 0.81 -4415 RAN RAN, member RAS oncogene family 142240 2 2 2 0 0 1 1 0 0 0 0.20 0.81 -4416 BBS12 Bardet-Biedl syndrome 12 478688 4 4 4 1 1 1 1 0 1 0 0.20 0.81 -4417 EPAS1 endothelial PAS domain protein 1 582784 7 6 7 1 2 3 1 0 1 0 0.20 0.81 -4418 PLAT plasminogen activator, tissue 389984 5 5 5 2 1 1 2 0 1 0 0.20 0.81 -4419 TCTE1 t-complex-associated-testis-expressed 1 331856 4 4 4 5 2 1 0 0 1 0 0.20 0.81 -4420 ZNF627 zinc finger protein 627 304976 6 3 6 0 3 0 0 0 3 0 0.20 0.81 -4421 NECAP2 NECAP endocytosis associated 2 186136 3 3 3 0 1 2 0 0 0 0 0.20 0.81 -4422 SLC35B2 solute carrier family 35, member B2 291200 2 2 2 1 1 0 0 0 1 0 0.20 0.81 -4423 FBXL2 F-box and leucine-rich repeat protein 2 296800 3 3 3 3 2 0 1 0 0 0 0.20 0.81 -4424 OTUD7B OTU domain containing 7B 577024 5 5 5 0 1 1 2 0 1 0 0.20 0.81 -4425 C1orf144 chromosome 1 open reading frame 144 86824 1 1 1 0 0 0 0 0 1 0 0.20 0.81 -4426 CHST15 383852 8 6 8 3 6 2 0 0 0 0 0.20 0.81 -4427 ZNF317 zinc finger protein 317 392288 6 5 6 3 2 3 0 0 1 0 0.20 0.81 -4428 PXMP2 peroxisomal membrane protein 2, 22kDa 107968 1 1 1 0 0 0 0 0 1 0 0.20 0.81 -4429 CCDC83 coiled-coil domain containing 83 308896 5 3 4 0 1 2 0 0 2 0 0.20 0.81 -4430 TIMP2 TIMP metallopeptidase inhibitor 2 122976 2 2 2 0 1 0 1 0 0 0 0.20 0.81 -4431 ZNF506 zinc finger protein 506 302624 4 4 4 3 1 2 1 0 0 0 0.20 0.81 -4432 USP50 ubiquitin specific peptidase 50 231392 3 3 3 1 2 0 1 0 0 0 0.20 0.82 -4433 EPN2 epsin 2 419552 4 4 4 0 1 1 1 0 1 0 0.20 0.82 -4434 KIAA0141 KIAA0141 357504 3 3 3 1 2 0 0 0 1 0 0.20 0.82 -4435 ANPEP alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150) 668416 8 8 8 2 3 3 2 0 0 0 0.20 0.82 -4436 IGSF1 immunoglobulin superfamily, member 1 931616 9 9 9 5 2 2 5 0 0 0 0.20 0.82 -4437 BCMO1 beta-carotene 15,15'-monooxygenase 1 378112 4 4 4 0 2 0 2 0 0 0 0.20 0.82 -4438 SIPA1L1 signal-induced proliferation-associated 1 like 1 1231776 14 9 12 8 6 5 1 0 2 0 0.20 0.82 -4439 OMD osteomodulin 285376 4 3 4 0 1 2 0 0 1 0 0.20 0.82 -4440 FAM83C family with sequence similarity 83, member C 461784 5 5 5 1 1 2 2 0 0 0 0.20 0.82 -4441 C8orf55 chromosome 8 open reading frame 55 46732 1 1 1 0 0 1 0 0 0 0 0.20 0.82 -4442 C17orf87 chromosome 17 open reading frame 87 102592 1 1 1 0 0 0 1 0 0 0 0.20 0.82 -4443 HTR4 5-hydroxytryptamine (serotonin) receptor 4 333088 3 3 3 1 1 0 1 0 1 0 0.20 0.82 -4444 PSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3 281952 3 3 3 1 0 1 2 0 0 0 0.20 0.82 -4445 PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent) 519232 8 6 7 1 4 1 1 0 2 0 0.20 0.82 -4446 FLT1 fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) 913696 13 10 13 7 5 6 2 0 0 0 0.20 0.82 -4447 HRH4 histamine receptor H4 265440 2 2 2 2 0 0 1 0 1 0 0.20 0.82 -4448 MAS1L MAS1 oncogene-like 255584 4 3 4 1 1 1 1 1 0 0 0.20 0.82 -4449 ATG2B ATG2 autophagy related 2 homolog B (S. cerevisiae) 1430688 9 8 9 2 0 1 3 0 5 0 0.20 0.82 -4450 CKS2 CDC28 protein kinase regulatory subunit 2 56448 1 1 1 0 0 0 1 0 0 0 0.20 0.82 -4451 KIF18A kinesin family member 18A 618464 6 6 4 5 4 0 1 0 1 0 0.20 0.82 -4452 MS4A13 membrane-spanning 4-domains, subfamily A, member 13 107296 1 1 1 0 1 0 0 0 0 0 0.20 0.82 -4453 FAR2 356608 4 4 4 1 3 0 1 0 0 0 0.20 0.82 -4454 SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 265692 3 3 3 2 1 0 1 0 1 0 0.20 0.82 -4455 TBCE tubulin folding cofactor E 369152 3 3 3 0 1 0 0 0 2 0 0.20 0.82 -4456 SAA2 serum amyloid A2 85344 1 1 1 0 0 0 1 0 0 0 0.20 0.82 -4457 SSTR4 somatostatin receptor 4 232652 4 4 4 0 3 0 1 0 0 0 0.20 0.82 -4458 TKTL1 transketolase-like 1 412832 5 5 5 2 1 1 2 0 1 0 0.20 0.82 -4459 FURIN furin (paired basic amino acid cleaving enzyme) 457804 3 3 3 0 0 0 0 0 3 0 0.20 0.82 -4460 OR6C74 olfactory receptor, family 6, subfamily C, member 74 211232 2 2 2 1 0 0 1 0 1 0 0.20 0.82 -4461 RAF1 v-raf-1 murine leukemia viral oncogene homolog 1 450464 6 5 5 1 4 2 0 0 0 0 0.20 0.82 -4462 MYH8 myosin, heavy chain 8, skeletal muscle, perinatal 1336384 20 13 18 3 10 7 3 0 0 0 0.20 0.82 -4463 MOXD1 monooxygenase, DBH-like 1 375368 7 4 7 2 2 3 1 0 1 0 0.20 0.82 -4464 C1orf183 chromosome 1 open reading frame 183 205632 2 2 2 0 0 1 0 0 1 0 0.20 0.82 -4465 OMP olfactory marker protein 92960 2 2 2 0 0 2 0 0 0 0 0.20 0.82 -4466 NAA50 118720 1 1 1 1 0 0 1 0 0 0 0.20 0.82 -4467 RAB19 RAB19, member RAS oncogene family 149184 2 2 2 0 1 1 0 0 0 0 0.20 0.82 -4468 C7 complement component 7 580984 5 5 5 2 2 0 1 0 2 0 0.20 0.82 -4469 DUSP1 dual specificity phosphatase 1 174216 2 2 2 0 0 0 2 0 0 0 0.20 0.82 -4470 PPID peptidylprolyl isomerase D (cyclophilin D) 258272 3 3 3 0 0 1 1 0 1 0 0.20 0.82 -4471 LIG4 ligase IV, DNA, ATP-dependent 607544 7 5 7 2 2 4 1 0 0 0 0.20 0.82 -4472 TRIM9 tripartite motif-containing 9 471016 6 6 6 1 1 3 1 0 1 0 0.20 0.82 -4473 GLT8D1 glycosyltransferase 8 domain containing 1 258048 3 3 3 0 1 1 1 0 0 0 0.20 0.82 -4474 GOLGA7 golgi autoantigen, golgin subfamily a, 7 97440 1 1 1 0 0 0 0 0 1 0 0.20 0.82 -4475 ADCY5 adenylate cyclase 5 702548 11 10 10 1 7 1 1 0 2 0 0.20 0.82 -4476 RAET1E retinoic acid early transcript 1E 180992 2 2 2 1 0 2 0 0 0 0 0.20 0.82 -4477 CD1A CD1a molecule 225792 3 3 3 2 2 0 0 1 0 0 0.20 0.82 -4478 CNTNAP5 contactin associated protein-like 5 873288 13 9 13 9 6 2 2 1 2 0 0.20 0.82 -4479 MMP3 matrix metallopeptidase 3 (stromelysin 1, progelatinase) 330176 2 2 2 1 0 1 0 0 1 0 0.20 0.82 -4480 C5orf56 86944 1 1 1 0 0 0 1 0 0 0 0.20 0.82 -4481 DEPDC7 DEP domain containing 7 358704 4 4 4 0 0 3 0 0 1 0 0.20 0.82 -4482 CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 139756 2 2 2 1 1 0 0 0 1 0 0.20 0.82 -4483 KIAA1217 KIAA1217 1325184 13 12 13 6 8 2 1 0 2 0 0.20 0.82 -4484 SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 1341932 21 10 21 1 6 9 3 0 1 2 0.20 0.82 -4485 ZNF488 zinc finger protein 488 198128 2 2 2 0 0 0 1 0 1 0 0.20 0.82 -4486 UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9 361312 6 6 6 0 6 0 0 0 0 0 0.20 0.82 -4487 TSPAN2 tetraspanin 2 150220 2 2 2 2 1 0 0 0 1 0 0.20 0.82 -4488 SHQ1 SHQ1 homolog (S. cerevisiae) 380472 4 4 4 2 2 1 0 0 1 0 0.20 0.82 -4489 C6orf146 chromosome 6 open reading frame 146 347424 4 3 4 2 0 1 1 0 2 0 0.20 0.82 -4490 CENPV 113960 2 2 2 0 2 0 0 0 0 0 0.20 0.82 -4491 SECISBP2 SECIS binding protein 2 580832 4 4 4 2 2 0 1 0 1 0 0.20 0.82 -4492 EVL Enah/Vasp-like 279788 3 3 3 0 1 0 0 1 1 0 0.20 0.82 -4493 UTP14C UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast) 516320 7 5 7 4 0 5 1 0 1 0 0.20 0.82 -4494 MIER1 mesoderm induction early response 1 homolog (Xenopus laevis) 390460 3 3 3 0 0 0 0 0 3 0 0.20 0.82 -4495 UBE3A ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome) 602544 11 7 11 2 5 5 1 0 0 0 0.20 0.82 -4496 CHSY1 chondroitin sulfate synthase 1 469728 5 5 5 6 2 2 0 0 1 0 0.20 0.82 -4497 HINT1 histidine triad nucleotide binding protein 1 88032 1 1 1 0 0 1 0 0 0 0 0.20 0.82 -4498 PIAS3 protein inhibitor of activated STAT, 3 428484 4 4 4 1 2 2 0 0 0 0 0.20 0.82 -4499 ALS2CR8 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8 500416 3 3 3 1 0 2 1 0 0 0 0.20 0.82 -4500 RGS17 regulator of G-protein signaling 17 145376 2 2 2 2 0 2 0 0 0 0 0.20 0.82 -4501 ZFPM2 zinc finger protein, multitype 2 771456 6 6 6 4 2 2 1 0 1 0 0.20 0.82 -4502 RHD Rh blood group, D antigen 278432 3 3 3 1 1 1 0 1 0 0 0.20 0.82 -4503 USPL1 ubiquitin specific peptidase like 1 741664 7 7 7 2 2 2 3 0 0 0 0.21 0.82 -4504 OTX1 orthodenticle homeobox 1 230244 4 4 4 2 1 1 2 0 0 0 0.21 0.82 -4505 FBXL21 F-box and leucine-rich repeat protein 21 295496 6 4 6 1 0 4 2 0 0 0 0.21 0.82 -4506 C10orf35 chromosome 10 open reading frame 35 82936 1 1 1 0 0 1 0 0 0 0 0.21 0.82 -4507 RILPL2 Rab interacting lysosomal protein-like 2 133820 2 2 2 0 1 1 0 0 0 0 0.21 0.82 -4508 MFRP membrane frizzled-related protein 351348 2 2 2 0 0 0 0 0 2 0 0.21 0.82 -4509 KIAA1715 KIAA1715 299040 4 3 4 0 0 2 1 0 1 0 0.21 0.82 -4510 SND1 staphylococcal nuclease and tudor domain containing 1 626488 7 7 7 2 4 1 1 0 1 0 0.21 0.82 -4511 ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 309792 4 4 4 2 2 0 2 0 0 0 0.21 0.82 -4512 HSPB3 heat shock 27kDa protein 3 102368 2 2 2 2 1 0 0 0 1 0 0.21 0.82 -4513 PGF placental growth factor 99708 2 2 2 1 2 0 0 0 0 0 0.21 0.82 -4514 CLCN4 chloride channel 4 520976 9 8 9 3 8 1 0 0 0 0 0.21 0.82 -4515 TRYX3 167104 2 2 2 0 0 1 1 0 0 0 0.21 0.82 -4516 RPS3 ribosomal protein S3 168168 2 2 2 0 0 2 0 0 0 0 0.21 0.82 -4517 THAP2 THAP domain containing, apoptosis associated protein 2 156576 3 2 3 0 1 1 0 0 1 0 0.21 0.82 -4518 COL4A4 collagen, type IV, alpha 4 1178464 10 9 10 4 1 6 0 0 3 0 0.21 0.82 -4519 LYN v-yes-1 Yamaguchi sarcoma viral related oncogene homolog 355488 4 4 4 0 2 0 2 0 0 0 0.21 0.82 -4520 HIST1H1D histone cluster 1, H1d 150080 2 2 2 1 0 1 1 0 0 0 0.21 0.82 -4521 PLSCR3 phospholipid scramblase 3 144620 3 3 2 0 2 0 0 0 1 0 0.21 0.82 -4522 RBX1 ring-box 1 71428 1 1 1 0 1 0 0 0 0 0 0.21 0.82 -4523 CCDC36 coiled-coil domain containing 36 401632 3 3 3 0 0 2 0 0 1 0 0.21 0.82 -4524 MORN5 113344 2 2 2 1 0 1 1 0 0 0 0.21 0.82 -4525 NR1H3 nuclear receptor subfamily 1, group H, member 3 305256 4 4 4 2 2 1 1 0 0 0 0.21 0.82 -4526 SCG2 secretogranin II (chromogranin C) 416192 6 4 6 4 0 4 1 0 1 0 0.21 0.82 -4527 AKAP6 A kinase (PRKA) anchor protein 6 1565340 16 11 16 7 4 7 3 0 2 0 0.21 0.82 -4528 FAM13C 406336 6 5 6 2 2 1 2 0 1 0 0.21 0.82 -4529 STC1 stanniocalcin 1 170240 2 2 2 2 0 2 0 0 0 0 0.21 0.82 -4530 MKX mohawk homeobox 220900 3 3 3 0 2 0 1 0 0 0 0.21 0.82 -4531 PRDM5 PR domain containing 5 430220 5 4 5 0 2 1 0 0 2 0 0.21 0.82 -4532 C17orf78 chromosome 17 open reading frame 78 191744 1 1 1 0 0 0 0 0 1 0 0.21 0.82 -4533 OPN1SW opsin 1 (cone pigments), short-wave-sensitive 239008 3 3 3 0 1 1 1 0 0 0 0.21 0.82 -4534 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 730056 9 8 9 2 3 4 2 0 0 0 0.21 0.82 -4535 IFT81 intraflagellar transport 81 homolog (Chlamydomonas) 471072 3 3 3 0 1 1 0 0 1 0 0.21 0.82 -4536 C9orf47 chromosome 9 open reading frame 47 80040 1 1 1 0 0 0 1 0 0 0 0.21 0.82 -4537 HSPA13 320320 2 2 2 0 0 0 1 0 1 0 0.21 0.82 -4538 KRT78 keratin 78 358176 4 4 4 2 3 0 0 0 1 0 0.21 0.82 -4539 PIGX phosphatidylinositol glycan anchor biosynthesis, class X 166208 4 3 4 1 0 3 1 0 0 0 0.21 0.82 -4540 LGMN legumain 303296 3 3 3 2 1 0 1 0 1 0 0.21 0.82 -4541 DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 823028 11 9 11 5 5 4 1 0 1 0 0.21 0.82 -4542 SPRR2B small proline-rich protein 2B 49952 1 1 1 0 0 1 0 0 0 0 0.21 0.82 -4543 EFHB EF-hand domain family, member B 569104 8 6 8 2 2 4 1 0 1 0 0.21 0.82 -4544 RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 1102528 8 7 8 1 3 2 2 0 1 0 0.21 0.82 -4545 PLCB4 phospholipase C, beta 4 840896 10 9 10 1 4 3 3 0 0 0 0.21 0.82 -4546 KRTAP12-1 keratin associated protein 12-1 66080 1 1 1 0 0 1 0 0 0 0 0.21 0.82 -4547 TMOD2 tropomodulin 2 (neuronal) 244608 2 2 2 0 0 0 1 0 1 0 0.21 0.82 -4548 CLPP ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli) 140032 2 2 2 0 1 0 0 0 1 0 0.21 0.82 -4549 TNP1 transition protein 1 (during histone to protamine replacement) 39424 1 1 1 0 1 0 0 0 0 0 0.21 0.82 -4550 COX8C cytochrome c oxidase subunit 8C 39928 1 1 1 0 1 0 0 0 0 0 0.21 0.83 -4551 KIAA0408 KIAA0408 470596 6 4 6 2 0 2 2 0 2 0 0.21 0.83 -4552 EPB41L5 erythrocyte membrane protein band 4.1 like 5 514752 5 5 5 0 1 3 1 0 0 0 0.21 0.83 -4553 ANKRD7 ankyrin repeat domain 7 176736 3 3 3 1 0 2 1 0 0 0 0.21 0.83 -4554 OR52K1 olfactory receptor, family 52, subfamily K, member 1 212576 2 2 2 1 0 1 1 0 0 0 0.21 0.83 -4555 KLF14 Kruppel-like factor 14 109816 2 2 2 1 1 0 0 0 1 0 0.21 0.83 -4556 TRPC5 transient receptor potential cation channel, subfamily C, member 5 663488 6 6 5 0 4 2 0 0 0 0 0.21 0.83 -4557 ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 1319752 14 11 14 3 7 3 3 0 1 0 0.21 0.83 -4558 C12orf45 chromosome 12 open reading frame 45 128576 1 1 1 0 0 0 0 0 1 0 0.21 0.83 -4559 ELL3 elongation factor RNA polymerase II-like 3 272824 4 3 4 1 1 1 1 0 1 0 0.21 0.83 -4560 STAG2 stromal antigen 2 882336 6 6 6 3 0 3 2 0 1 0 0.21 0.83 -4561 LIX1L Lix1 homolog (mouse)-like 177688 3 3 3 1 1 2 0 0 0 0 0.21 0.83 -4562 LARP1B 635488 7 5 7 0 2 1 1 1 0 2 0.21 0.83 -4563 STYX serine/threonine/tyrosine interacting protein 160384 2 2 2 0 0 1 0 0 1 0 0.21 0.83 -4564 FXYD5 FXYD domain containing ion transport regulator 5 127456 2 2 2 1 1 1 0 0 0 0 0.21 0.83 -4565 CCDC104 coiled-coil domain containing 104 239456 3 3 3 0 1 1 0 0 1 0 0.21 0.83 -4566 ULBP1 UL16 binding protein 1 168224 2 2 2 1 0 0 1 0 1 0 0.21 0.83 -4567 ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 233104 3 3 3 1 0 1 1 0 1 0 0.21 0.83 -4568 ITSN2 intersectin 2 1178240 11 8 11 1 2 2 3 0 2 2 0.21 0.83 -4569 PDILT 402976 7 5 7 5 4 2 1 0 0 0 0.21 0.83 -4570 C2orf79 94108 2 2 2 0 0 2 0 0 0 0 0.21 0.83 -4571 PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) 265664 5 3 5 0 1 2 1 0 1 0 0.21 0.83 -4572 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 191744 2 2 2 0 0 1 0 0 1 0 0.21 0.83 -4573 ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 669260 10 10 10 4 8 1 1 0 0 0 0.21 0.83 -4574 GLI4 GLI-Kruppel family member GLI4 126816 1 1 1 0 0 0 0 0 1 0 0.21 0.83 -4575 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 2354408 25 15 25 3 6 10 5 1 3 0 0.21 0.83 -4576 SLC30A3 solute carrier family 30 (zinc transporter), member 3 260176 3 3 3 0 2 1 0 0 0 0 0.21 0.83 -4577 CAPN2 calpain 2, (m/II) large subunit 450684 7 6 7 2 4 0 2 0 1 0 0.21 0.83 -4578 MAGED2 melanoma antigen family D, 2 371324 5 5 5 0 5 0 0 0 0 0 0.21 0.83 -4579 A1CF APOBEC1 complementation factor 438144 6 4 5 0 1 1 2 0 2 0 0.21 0.83 -4580 ABLIM2 actin binding LIM protein family, member 2 432024 4 4 4 0 0 2 0 0 2 0 0.21 0.83 -4581 CTLA4 cytotoxic T-lymphocyte-associated protein 4 154112 2 2 2 3 0 2 0 0 0 0 0.21 0.83 -4582 COL2A1 collagen, type II, alpha 1 988852 9 9 9 2 2 4 1 0 2 0 0.21 0.83 -4583 C20orf111 chromosome 20 open reading frame 111 199584 3 3 3 0 2 1 0 0 0 0 0.21 0.83 -4584 CDK12 1013052 8 8 8 1 3 3 0 0 2 0 0.21 0.83 -4585 C17orf108 52784 1 1 1 0 0 0 1 0 0 0 0.21 0.83 -4586 ZNF800 zinc finger protein 800 451360 6 5 6 0 3 1 1 0 1 0 0.21 0.83 -4587 PJA1 praja 1 432740 6 5 6 1 3 2 1 0 0 0 0.21 0.83 -4588 NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 91016 1 1 1 0 0 0 0 0 1 0 0.21 0.83 -4589 DNAJC27 190400 2 2 2 2 1 0 0 0 1 0 0.21 0.83 -4590 BATF3 basic leucine zipper transcription factor, ATF-like 3 67648 1 1 1 0 1 0 0 0 0 0 0.21 0.83 -4591 C10orf128 chromosome 10 open reading frame 128 76608 1 1 1 0 1 0 0 0 0 0 0.21 0.83 -4592 RIT1 Ras-like without CAAX 1 152320 2 2 2 1 0 1 1 0 0 0 0.21 0.83 -4593 DEFB134 46816 1 1 1 0 0 1 0 0 0 0 0.21 0.83 -4594 NCEH1 298536 4 4 4 0 1 1 2 0 0 0 0.21 0.83 -4595 RAB24 RAB24, member RAS oncogene family 144256 2 2 2 0 1 1 0 0 0 0 0.21 0.83 -4596 HEMGN hemogen 329504 5 3 5 0 2 1 0 0 2 0 0.21 0.83 -4597 ING4 inhibitor of growth family, member 4 175168 2 2 2 0 0 1 1 0 0 0 0.21 0.83 -4598 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 210784 4 3 4 0 1 2 0 0 1 0 0.21 0.83 -4599 TNFAIP6 tumor necrosis factor, alpha-induced protein 6 192192 2 2 2 1 1 0 1 0 0 0 0.21 0.83 -4600 UBE2T ubiquitin-conjugating enzyme E2T (putative) 138432 1 1 1 0 0 0 0 0 1 0 0.21 0.83 -4601 ZC3H15 zinc finger CCCH-type containing 15 285160 4 3 4 0 1 2 1 0 0 0 0.21 0.83 -4602 ZNF709 zinc finger protein 709 435008 9 4 9 0 2 3 0 1 1 2 0.21 0.83 -4603 LRRC31 leucine rich repeat containing 31 379680 8 4 7 0 0 4 4 0 0 0 0.21 0.83 -4604 ZNF595 zinc finger protein 595 432044 5 4 5 1 1 2 2 0 0 0 0.21 0.83 -4605 MTA2 metastasis associated 1 family, member 2 463008 5 4 5 0 1 2 1 0 1 0 0.21 0.83 -4606 IQCD IQ motif containing D 235648 3 3 3 1 2 0 1 0 0 0 0.21 0.83 -4607 SCPEP1 serine carboxypeptidase 1 307904 3 3 3 0 1 2 0 0 0 0 0.21 0.83 -4608 C1orf88 chromosome 1 open reading frame 88 134400 2 2 2 0 0 1 1 0 0 0 0.21 0.83 -4609 TYR tyrosinase (oculocutaneous albinism IA) 360640 3 3 3 4 1 0 2 0 0 0 0.21 0.83 -4610 CSRP1 cysteine and glycine-rich protein 1 134848 2 2 2 1 1 0 0 0 1 0 0.21 0.83 -4611 KCTD3 potassium channel tetramerisation domain containing 3 546664 5 5 4 0 1 1 0 0 3 0 0.21 0.83 -4612 GIT2 G protein-coupled receptor kinase interactor 2 524608 7 7 7 1 4 2 0 0 1 0 0.21 0.83 -4613 FOXL1 forkhead box L1 149424 3 3 2 0 0 2 1 0 0 0 0.21 0.83 -4614 MAP2K5 mitogen-activated protein kinase kinase 5 306616 4 4 4 0 3 0 1 0 0 0 0.21 0.83 -4615 C1orf101 chromosome 1 open reading frame 101 577820 6 5 6 1 0 3 2 0 1 0 0.21 0.83 -4616 RAD23B RAD23 homolog B (S. cerevisiae) 268800 3 3 3 0 2 1 0 0 0 0 0.21 0.83 -4617 NVL nuclear VCP-like 596512 6 6 6 4 1 3 2 0 0 0 0.21 0.83 -4618 GLDN gliomedin 325696 4 4 4 0 1 1 2 0 0 0 0.21 0.83 -4619 ESRRB estrogen-related receptor beta 283640 3 3 3 1 3 0 0 0 0 0 0.21 0.83 -4620 DENND2D DENN/MADD domain containing 2D 327936 3 3 3 1 0 1 2 0 0 0 0.21 0.83 -4621 C5orf13 chromosome 5 open reading frame 13 49056 1 1 1 0 0 1 0 0 0 0 0.21 0.83 -4622 RBM3 RNA binding motif (RNP1, RRM) protein 3 101408 1 1 1 0 0 0 1 0 0 0 0.21 0.83 -4623 SSB Sjogren syndrome antigen B (autoantigen La) 284704 2 2 2 0 0 1 0 0 1 0 0.21 0.83 -4624 TRAPPC10 844200 6 6 6 4 0 2 1 1 2 0 0.21 0.83 -4625 TNFSF18 tumor necrosis factor (ligand) superfamily, member 18 137088 1 1 1 1 0 0 1 0 0 0 0.21 0.83 -4626 OTUD3 OTU domain containing 3 224896 4 4 3 0 2 2 0 0 0 0 0.21 0.84 -4627 ATPBD4 ATP binding domain 4 216784 1 1 1 0 0 0 0 0 1 0 0.21 0.84 -4628 CDC42EP1 CDC42 effector protein (Rho GTPase binding) 1 228036 2 2 1 0 0 0 0 0 2 0 0.21 0.84 -4629 IL33 interleukin 33 188384 2 2 2 0 0 1 0 0 1 0 0.21 0.84 -4630 HTR3C 5-hydroxytryptamine (serotonin) receptor 3, family member C 309120 3 3 3 1 1 1 0 0 1 0 0.21 0.84 -4631 ITGB1BP2 integrin beta 1 binding protein (melusin) 2 243712 2 2 2 0 0 1 1 0 0 0 0.21 0.84 -4632 CDH1 cadherin 1, type 1, E-cadherin (epithelial) 579880 5 5 5 2 1 1 1 0 2 0 0.21 0.84 -4633 SFRP2 secreted frizzled-related protein 2 192108 3 3 3 1 1 2 0 0 0 0 0.21 0.84 -4634 MIIP 266112 3 3 3 1 0 2 0 0 1 0 0.21 0.84 -4635 GLIPR1L1 GLI pathogenesis-related 1 like 1 161728 2 2 2 0 0 1 0 1 0 0 0.21 0.84 -4636 MYO5A myosin VA (heavy chain 12, myoxin) 1277024 10 9 10 2 2 2 4 0 2 0 0.21 0.84 -4637 REL v-rel reticuloendotheliosis viral oncogene homolog (avian) 415248 4 4 4 2 1 0 2 0 1 0 0.21 0.84 -4638 TPM4 tropomyosin 4 196864 4 4 4 1 3 1 0 0 0 0 0.21 0.84 -4639 PDC phosducin 168672 2 2 2 0 0 1 1 0 0 0 0.21 0.84 -4640 IGSF21 immunoglobin superfamily, member 21 306292 4 4 4 2 2 2 0 0 0 0 0.22 0.84 -4641 LUC7L2 LUC7-like 2 (S. cerevisiae) 258496 3 3 3 0 3 0 0 0 0 0 0.22 0.84 -4642 COMMD8 COMM domain containing 8 112448 2 2 2 0 1 0 1 0 0 0 0.22 0.84 -4643 PILRB paired immunoglobin-like type 2 receptor beta 156392 2 2 2 1 2 0 0 0 0 0 0.22 0.84 -4644 DMRTA1 DMRT-like family A1 212996 2 2 2 0 1 0 0 0 1 0 0.22 0.84 -4645 ROD1 ROD1 regulator of differentiation 1 (S. pombe) 387072 4 4 4 0 0 3 1 0 0 0 0.22 0.84 -4646 SLC37A3 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 378560 5 5 5 0 1 3 1 0 0 0 0.22 0.84 -4647 RLN2 relaxin 2 126784 2 2 2 0 0 1 1 0 0 0 0.22 0.84 -4648 FAM46D family with sequence similarity 46, member D 262976 4 3 4 3 0 1 3 0 0 0 0.22 0.84 -4649 PLD1 phospholipase D1, phosphatidylcholine-specific 745696 11 8 11 4 3 7 1 0 0 0 0.22 0.84 -4650 OR4N2 olfactory receptor, family 4, subfamily N, member 2 207368 2 2 2 2 1 1 0 0 0 0 0.22 0.84 -4651 DCUN1D1 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) 180404 2 2 2 1 1 0 1 0 0 0 0.22 0.84 -4652 ZNF146 zinc finger protein 146 197792 2 2 2 0 1 1 0 0 0 0 0.22 0.84 -4653 PCDHB6 protocadherin beta 6 505736 9 8 9 8 7 0 1 1 0 0 0.22 0.84 -4654 CDH3 cadherin 3, type 1, P-cadherin (placental) 546352 4 4 4 3 2 1 0 0 1 0 0.22 0.84 -4655 TMEM20 transmembrane protein 20 207872 2 2 2 0 1 0 0 0 1 0 0.22 0.84 -4656 ZNF664 zinc finger protein 664 176960 3 3 2 2 0 3 0 0 0 0 0.22 0.84 -4657 SLIT1 slit homolog 1 (Drosophila) 943528 11 10 11 5 5 5 0 0 1 0 0.22 0.84 -4658 WDR8 WD repeat domain 8 291760 4 4 4 1 2 0 1 1 0 0 0.22 0.84 -4659 GIMAP6 GTPase, IMAP family member 6 198688 4 3 4 2 2 2 0 0 0 0 0.22 0.84 -4660 NARS2 asparaginyl-tRNA synthetase 2, mitochondrial (putative) 328048 6 4 6 1 4 0 1 0 1 0 0.22 0.84 -4661 CEP164 centrosomal protein 164kDa 990664 11 9 11 1 3 4 2 0 2 0 0.22 0.84 -4662 SCNN1G sodium channel, nonvoltage-gated 1, gamma 447552 5 5 5 2 3 2 0 0 0 0 0.22 0.84 -4663 ARPP21 565376 7 6 6 3 4 1 2 0 0 0 0.22 0.84 -4664 PLAGL1 pleiomorphic adenoma gene-like 1 313600 4 4 4 0 2 1 1 0 0 0 0.22 0.84 -4665 BANF2 barrier to autointegration factor 2 63616 1 1 1 0 0 0 1 0 0 0 0.22 0.84 -4666 TRIM13 tripartite motif-containing 13 276416 4 3 4 1 1 2 1 0 0 0 0.22 0.84 -4667 TAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa 442596 4 4 4 1 1 0 1 0 2 0 0.22 0.84 -4668 UQCRH ubiquinol-cytochrome c reductase hinge protein 65408 1 1 1 0 1 0 0 0 0 0 0.22 0.84 -4669 FABP5 fatty acid binding protein 5 (psoriasis-associated) 79572 1 1 1 0 0 1 0 0 0 0 0.22 0.84 -4670 UBASH3B ubiquitin associated and SH3 domain containing, B 423024 4 4 4 1 1 0 3 0 0 0 0.22 0.84 -4671 ADCYAP1 adenylate cyclase activating polypeptide 1 (pituitary) 93100 3 3 3 0 2 1 0 0 0 0 0.22 0.84 -4672 FAM54B family with sequence similarity 54, member B 202272 2 2 2 0 0 1 0 0 1 0 0.22 0.84 -4673 SPRR2A small proline-rich protein 2A 49952 1 1 1 1 0 1 0 0 0 0 0.22 0.84 -4674 OR5L1 olfactory receptor, family 5, subfamily L, member 1 210560 3 2 3 1 0 1 2 0 0 0 0.22 0.84 -4675 DHX16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 511504 6 6 6 2 3 1 2 0 0 0 0.22 0.84 -4676 UPF2 UPF2 regulator of nonsense transcripts homolog (yeast) 872592 12 8 12 1 3 8 1 0 0 0 0.22 0.84 -4677 ZNF221 zinc finger protein 221 418880 6 4 6 1 0 4 1 0 1 0 0.22 0.84 -4678 CLCA2 chloride channel, calcium activated, family member 2 646912 7 6 6 3 3 4 0 0 0 0 0.22 0.84 -4679 SLAMF9 SLAM family member 9 198464 2 2 2 0 0 2 0 0 0 0 0.22 0.84 -4680 C17orf66 chromosome 17 open reading frame 66 397152 3 3 3 3 0 1 1 0 1 0 0.22 0.84 -4681 BCDIN3D BCDIN3 domain containing 198688 3 3 3 0 0 0 2 0 1 0 0.22 0.84 -4682 DGAT2 diacylglycerol O-acyltransferase homolog 2 (mouse) 258076 4 4 4 1 1 2 1 0 0 0 0.22 0.84 -4683 OR1L1 olfactory receptor, family 1, subfamily L, member 1 209440 2 2 2 0 1 0 1 0 0 0 0.22 0.84 -4684 ADD2 adducin 2 (beta) 526624 9 7 9 6 6 3 0 0 0 0 0.22 0.84 -4685 LGALS14 lectin, galactoside-binding, soluble, 14 121408 2 2 2 1 1 0 1 0 0 0 0.22 0.84 -4686 ZNHIT2 zinc finger, HIT type 2 176848 2 2 2 0 0 1 0 0 1 0 0.22 0.84 -4687 OR2H2 olfactory receptor, family 2, subfamily H, member 2 132020 3 2 3 0 0 2 0 0 1 0 0.22 0.84 -4688 ANO3 684096 8 7 8 3 0 4 4 0 0 0 0.22 0.84 -4689 C11orf85 152992 1 1 1 0 0 0 0 0 1 0 0.22 0.84 -4690 C14orf183 183284 2 2 2 0 0 1 0 0 1 0 0.22 0.84 -4691 HLA-A major histocompatibility complex, class I, A 189028 3 3 3 0 1 0 1 0 1 0 0.22 0.84 -4692 ABCA9 ATP-binding cassette, sub-family A (ABC1), member 9 1126048 18 9 18 2 2 9 4 0 3 0 0.22 0.84 -4693 NINJ1 ninjurin 1 87808 2 2 2 0 2 0 0 0 0 0 0.22 0.84 -4694 HNF4A hepatocyte nuclear factor 4, alpha 367080 6 5 6 1 3 2 1 0 0 0 0.22 0.84 -4695 POLR3A polymerase (RNA) III (DNA directed) polypeptide A, 155kDa 952736 11 8 11 2 3 6 0 0 2 0 0.22 0.84 -4696 BLM Bloom syndrome 971712 9 9 9 2 0 6 3 0 0 0 0.22 0.84 -4697 EVI5 ecotropic viral integration site 5 561120 6 5 6 2 0 2 3 0 1 0 0.22 0.84 -4698 CYP7A1 cytochrome P450, family 7, subfamily A, polypeptide 1 344736 4 4 4 1 2 2 0 0 0 0 0.22 0.84 -4699 C1orf226 170588 2 2 2 1 0 1 1 0 0 0 0.22 0.84 -4700 RARS arginyl-tRNA synthetase 450968 4 4 4 0 2 0 0 1 1 0 0.22 0.84 -4701 SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 444088 6 6 6 1 3 2 0 0 1 0 0.22 0.84 -4702 TBC1D17 TBC1 domain family, member 17 371184 4 4 4 0 1 0 2 0 1 0 0.22 0.84 -4703 IL31 interleukin 31 113568 2 2 2 2 1 0 1 0 0 0 0.22 0.84 -4704 MGAM maltase-glucoamylase (alpha-glucosidase) 1290280 13 10 13 7 6 2 3 0 2 0 0.22 0.84 -4705 SPINK5 serine peptidase inhibitor, Kazal type 5 768992 12 7 12 1 2 6 1 0 3 0 0.22 0.84 -4706 C5orf53 37184 1 1 1 0 1 0 0 0 0 0 0.22 0.84 -4707 ZNF211 zinc finger protein 211 383684 6 4 6 1 2 2 1 1 0 0 0.22 0.84 -4708 MRPL51 mitochondrial ribosomal protein L51 89376 1 1 1 0 0 0 0 0 1 0 0.22 0.84 -4709 CHORDC1 cysteine and histidine-rich domain (CHORD)-containing 1 233632 2 2 2 0 0 0 1 0 1 0 0.22 0.84 -4710 FAM189A2 312032 3 3 3 1 0 2 0 0 1 0 0.22 0.84 -4711 KLHL38 393708 5 5 5 4 3 2 0 0 0 0 0.22 0.84 -4712 HIST1H2BB histone cluster 1, H2bb 86240 2 2 2 0 1 0 1 0 0 0 0.22 0.84 -4713 STX5 syntaxin 5 217048 3 3 3 0 3 0 0 0 0 0 0.22 0.84 -4714 C7orf49 chromosome 7 open reading frame 49 92288 2 2 2 1 1 1 0 0 0 0 0.22 0.84 -4715 IRF9 interferon regulatory factor 9 271936 3 3 3 0 1 1 1 0 0 0 0.22 0.84 -4716 C1orf92 chromosome 1 open reading frame 92 209864 3 3 3 0 0 2 0 0 1 0 0.22 0.84 -4717 RNH1 ribonuclease/angiogenin inhibitor 1 289452 2 2 2 0 0 1 0 0 1 0 0.22 0.84 -4718 SERPINB11 serpin peptidase inhibitor, clade B (ovalbumin), member 11 270368 5 3 5 3 3 1 0 0 1 0 0.22 0.84 -4719 IMPG1 interphotoreceptor matrix proteoglycan 1 551488 7 6 7 1 1 3 3 0 0 0 0.22 0.84 -4720 HHEX hematopoietically expressed homeobox 103768 2 2 2 0 0 1 1 0 0 0 0.22 0.84 -4721 TARS threonyl-tRNA synthetase 503552 6 5 6 0 1 1 2 0 2 0 0.22 0.84 -4722 PVRL1 poliovirus receptor-related 1 (herpesvirus entry mediator C) 417796 6 6 6 3 3 2 1 0 0 0 0.22 0.84 -4723 CEP78 centrosomal protein 78kDa 476044 7 5 6 1 1 4 1 0 1 0 0.22 0.84 -4724 RASSF5 Ras association (RalGDS/AF-6) domain family member 5 231756 3 3 3 1 0 2 1 0 0 0 0.22 0.84 -4725 SOCS5 suppressor of cytokine signaling 5 361760 5 4 4 1 3 1 1 0 0 0 0.22 0.84 -4726 PLD3 phospholipase D family, member 3 319584 5 5 5 1 4 0 0 0 1 0 0.22 0.84 -4727 GXYLT1 263480 2 2 2 2 0 0 1 0 1 0 0.22 0.84 -4728 SSNA1 Sjogren syndrome nuclear autoantigen 1 69048 1 1 1 0 0 0 0 1 0 0 0.22 0.84 -4729 HSPA9 heat shock 70kDa protein 9 (mortalin) 460152 5 5 5 2 2 0 3 0 0 0 0.22 0.84 -4730 B3GNT1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 212576 2 2 2 0 1 0 0 0 1 0 0.22 0.84 -4731 ZCCHC17 zinc finger, CCHC domain containing 17 168896 2 2 2 0 0 1 1 0 0 0 0.22 0.84 -4732 METTL3 methyltransferase like 3 400288 4 4 4 0 1 0 3 0 0 0 0.22 0.84 -4733 PARP9 poly (ADP-ribose) polymerase family, member 9 585760 8 6 8 1 3 2 3 0 0 0 0.22 0.84 -4734 KISS1 KiSS-1 metastasis-suppressor 60788 1 1 1 0 0 1 0 0 0 0 0.22 0.84 -4735 FAM105B family with sequence similarity 105, member B 208544 2 2 2 1 0 1 0 0 1 0 0.22 0.84 -4736 MAB21L2 mab-21-like 2 (C. elegans) 242816 4 4 4 0 2 2 0 0 0 0 0.22 0.84 -4737 GPD1L glycerol-3-phosphate dehydrogenase 1-like 234220 3 3 3 1 0 3 0 0 0 0 0.22 0.84 -4738 NDST4 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 598304 4 4 4 0 0 2 2 0 0 0 0.22 0.84 -4739 EREG epiregulin 118720 1 1 1 1 0 0 0 0 1 0 0.22 0.84 -4740 SLC22A7 solute carrier family 22 (organic anion transporter), member 7 377752 6 5 6 2 2 4 0 0 0 0 0.22 0.84 -4741 ZNF101 zinc finger protein 101 297248 4 4 4 2 3 1 0 0 0 0 0.22 0.84 -4742 GLT8D2 glycosyltransferase 8 domain containing 2 243264 3 3 3 2 1 1 0 0 1 0 0.22 0.84 -4743 FAIM2 Fas apoptotic inhibitory molecule 2 221192 3 3 3 0 3 0 0 0 0 0 0.22 0.84 -4744 PCDHGC4 protocadherin gamma subfamily C, 4 636832 11 9 11 3 6 5 0 0 0 0 0.22 0.84 -4745 HTR3E 5-hydroxytryptamine (serotonin) receptor 3, family member E 324352 5 4 5 3 1 3 1 0 0 0 0.22 0.84 -4746 C10orf113 chromosome 10 open reading frame 113 104384 1 1 1 0 0 1 0 0 0 0 0.22 0.84 -4747 PTH1R 381504 3 3 3 0 0 2 0 0 1 0 0.22 0.84 -4748 KCND1 potassium voltage-gated channel, Shal-related subfamily, member 1 405504 7 7 7 0 3 3 1 0 0 0 0.22 0.84 -4749 C21orf91 chromosome 21 open reading frame 91 203840 2 2 2 0 1 0 0 0 1 0 0.22 0.84 -4750 CLCA1 chloride channel, calcium activated, family member 1 627424 6 6 6 3 1 2 2 0 1 0 0.22 0.84 -4751 SEC14L5 SEC14-like 5 (S. cerevisiae) 424912 6 6 6 1 4 1 1 0 0 0 0.22 0.84 -4752 CSTA cystatin A (stefin A) 69216 1 1 1 1 0 0 1 0 0 0 0.22 0.84 -4753 FAM92B family with sequence similarity 92, member B 212128 4 4 4 1 1 2 1 0 0 0 0.22 0.84 -4754 GLYR1 383096 4 4 4 0 2 0 0 1 1 0 0.22 0.84 -4755 SULF1 sulfatase 1 603008 8 6 8 2 3 2 2 0 1 0 0.22 0.84 -4756 S100A14 S100 calcium binding protein A14 73248 1 1 1 0 0 0 1 0 0 0 0.22 0.84 -4757 TSEN2 tRNA splicing endonuclease 2 homolog (S. cerevisiae) 325248 3 3 3 2 1 0 1 0 1 0 0.22 0.84 -4758 RPH3A rabphilin 3A homolog (mouse) 477644 6 6 6 2 1 4 1 0 0 0 0.22 0.84 -4759 LAS1L LAS1-like (S. cerevisiae) 454840 4 4 4 0 1 2 0 0 1 0 0.22 0.84 -4760 CD53 CD53 molecule 154112 2 2 2 4 0 1 0 0 1 0 0.22 0.84 -4761 IRAK4 interleukin-1 receptor-associated kinase 4 319648 4 3 4 1 0 3 1 0 0 0 0.22 0.84 -4762 WIPF3 WAS/WASL interacting protein family, member 3 209928 3 3 3 1 1 1 0 0 1 0 0.22 0.84 -4763 FAM107A family with sequence similarity 107, member A 100128 2 2 2 0 2 0 0 0 0 0 0.22 0.84 -4764 HPS6 Hermansky-Pudlak syndrome 6 374108 4 4 4 0 1 2 0 0 1 0 0.22 0.84 -4765 DOCK3 dedicator of cytokinesis 3 1358124 18 12 17 6 9 4 3 0 2 0 0.22 0.84 -4766 MSRB2 methionine sulfoxide reductase B2 100128 2 2 2 0 0 2 0 0 0 0 0.22 0.84 -4767 OR10H4 olfactory receptor, family 10, subfamily H, member 4 213920 3 3 3 0 0 2 1 0 0 0 0.22 0.84 -4768 PLN phospholamban 36512 1 1 1 0 0 1 0 0 0 0 0.22 0.84 -4769 DNAH9 dynein, axonemal, heavy chain 9 2982784 34 18 33 14 9 13 6 0 3 3 0.22 0.84 -4770 CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 1233232 14 12 14 3 5 4 4 0 1 0 0.22 0.84 -4771 SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 81200 1 1 1 0 0 0 0 0 1 0 0.22 0.84 -4772 VWC2L 152544 2 2 2 1 1 1 0 0 0 0 0.22 0.84 -4773 RPL28 ribosomal protein L28 100800 2 2 2 0 1 1 0 0 0 0 0.22 0.84 -4774 DEPDC6 DEP domain containing 6 283584 3 3 3 1 0 1 1 0 1 0 0.22 0.84 -4775 C1QTNF1 C1q and tumor necrosis factor related protein 1 192192 4 4 4 0 1 3 0 0 0 0 0.22 0.84 -4776 CASP5 caspase 5, apoptosis-related cysteine peptidase 290976 4 4 4 1 2 0 2 0 0 0 0.22 0.84 -4777 NFXL1 nuclear transcription factor, X-box binding-like 1 594000 5 5 5 1 1 2 2 0 0 0 0.22 0.84 -4778 TBK1 TANK-binding kinase 1 508480 6 5 6 0 1 2 2 0 1 0 0.22 0.84 -4779 ENO3 enolase 3 (beta, muscle) 302176 4 4 4 0 1 1 1 0 1 0 0.22 0.84 -4780 TEX14 testis expressed 14 1027600 14 8 14 7 2 8 3 0 1 0 0.22 0.84 -4781 RAB40B RAB40B, member RAS oncogene family 177996 2 2 2 0 1 0 0 0 1 0 0.22 0.84 -4782 C1RL complement component 1, r subcomponent-like 328416 3 3 2 1 1 0 0 0 2 0 0.22 0.84 -4783 TAAR2 trace amine associated receptor 2 238336 2 2 2 1 0 2 0 0 0 0 0.22 0.84 -4784 PDK4 pyruvate dehydrogenase kinase, isozyme 4 285460 3 3 3 0 2 0 0 0 1 0 0.22 0.84 -4785 AFTPH aftiphilin 638400 6 5 6 1 1 2 0 0 3 0 0.22 0.84 -4786 NUP133 nucleoporin 133kDa 791056 7 7 7 3 4 1 0 0 2 0 0.22 0.84 -4787 LIPN lipase, family member N 239608 4 2 4 0 1 2 0 0 1 0 0.22 0.85 -4788 ODF4 outer dense fiber of sperm tails 4 176064 2 2 2 1 0 1 1 0 0 0 0.22 0.85 -4789 GALNTL1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 379924 5 5 5 0 2 2 0 0 1 0 0.22 0.85 -4790 CDK3 cyclin-dependent kinase 3 211904 3 3 3 0 2 1 0 0 0 0 0.22 0.85 -4791 C5orf58 71904 1 1 1 0 0 0 1 0 0 0 0.22 0.85 -4792 LILRB2 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 402496 4 4 4 0 0 2 1 0 1 0 0.22 0.85 -4793 SPARC secreted protein, acidic, cysteine-rich (osteonectin) 212352 4 4 4 1 2 2 0 0 0 0 0.22 0.85 -4794 OGN osteoglycin 206304 3 3 3 1 1 1 1 0 0 0 0.22 0.85 -4795 OR2M3 olfactory receptor, family 2, subfamily M, member 3 211232 4 3 3 0 3 1 0 0 0 0 0.22 0.85 -4796 SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 258496 3 3 3 0 2 1 0 0 0 0 0.22 0.85 -4797 PAIP2B poly(A) binding protein interacting protein 2B 82072 1 1 1 0 0 1 0 0 0 0 0.22 0.85 -4798 STX3 syntaxin 3 203840 3 3 3 1 0 1 1 0 1 0 0.22 0.85 -4799 BTRC beta-transducin repeat containing 408128 5 4 5 1 2 0 2 0 1 0 0.22 0.85 -4800 MAT1A methionine adenosyltransferase I, alpha 269824 5 4 5 2 4 1 0 0 0 0 0.23 0.85 -4801 ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) 536928 7 7 7 0 4 3 0 0 0 0 0.23 0.85 -4802 STAT1 signal transducer and activator of transcription 1, 91kDa 526176 6 6 6 1 2 1 3 0 0 0 0.23 0.85 -4803 C14orf39 chromosome 14 open reading frame 39 410368 5 4 5 0 0 3 1 0 1 0 0.23 0.85 -4804 ORAOV1 oral cancer overexpressed 1 97216 1 1 1 1 0 0 1 0 0 0 0.23 0.85 -4805 RANBP3 RAN binding protein 3 396792 3 3 3 0 1 0 1 0 1 0 0.23 0.85 -4806 FN3KRP 201516 2 2 2 0 0 0 1 0 1 0 0.23 0.85 -4807 CYB5R1 cytochrome b5 reductase 1 213696 3 3 3 0 2 0 1 0 0 0 0.23 0.85 -4808 UGT2B15 UDP glucuronosyltransferase 2 family, polypeptide B15 263380 2 2 2 0 0 0 1 0 1 0 0.23 0.85 -4809 PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 930272 12 8 12 4 4 2 6 0 0 0 0.23 0.85 -4810 TBC1D25 TBC1 domain family, member 25 437500 6 6 6 0 5 1 0 0 0 0 0.23 0.85 -4811 TRPV2 transient receptor potential cation channel, subfamily V, member 2 526488 6 6 6 1 2 3 0 0 1 0 0.23 0.85 -4812 ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 331520 4 4 4 0 1 2 1 0 0 0 0.23 0.85 -4813 KCTD1 potassium channel tetramerisation domain containing 1 178360 2 2 2 1 0 0 1 0 1 0 0.23 0.85 -4814 WTAP Wilms tumor 1 associated protein 273952 2 2 1 1 0 0 0 0 2 0 0.23 0.85 -4815 ZFX zinc finger protein, X-linked 550144 5 5 5 2 0 3 1 0 1 0 0.23 0.85 -4816 OR5C1 olfactory receptor, family 5, subfamily C, member 1 216608 3 3 3 2 0 3 0 0 0 0 0.23 0.85 -4817 CGB2 chorionic gonadotropin, beta polypeptide 2 67200 1 1 1 0 0 1 0 0 0 0 0.23 0.85 -4818 FNBP1 formin binding protein 1 414192 6 5 6 1 2 3 1 0 0 0 0.23 0.85 -4819 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) 324128 9 4 8 0 4 3 1 0 1 0 0.23 0.85 -4820 AGAP1 575148 10 9 10 2 7 2 0 0 1 0 0.23 0.85 -4821 PDS5A PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 891272 9 8 9 0 4 4 0 0 1 0 0.23 0.85 -4822 WIZ widely interspaced zinc finger motifs 423808 4 4 4 0 0 3 0 0 1 0 0.23 0.85 -4823 APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 217952 4 3 4 0 2 2 0 0 0 0 0.23 0.85 -4824 ZNF643 zinc finger protein 643 295904 6 4 6 0 1 3 2 0 0 0 0.23 0.85 -4825 ZNF320 zinc finger protein 320 345408 4 3 4 1 1 2 0 0 1 0 0.23 0.85 -4826 RXRB retinoid X receptor, beta 190800 3 3 3 0 0 3 0 0 0 0 0.23 0.85 -4827 SEC23IP SEC23 interacting protein 688464 7 7 7 1 2 3 2 0 0 0 0.23 0.85 -4828 STX8 syntaxin 8 163440 4 3 4 0 3 1 0 0 0 0 0.23 0.85 -4829 ETF1 eukaryotic translation termination factor 1 303296 5 4 5 1 0 4 1 0 0 0 0.23 0.85 -4830 PLAUR plasminogen activator, urokinase receptor 238832 4 4 4 2 2 2 0 0 0 0 0.23 0.85 -4831 OR2B2 olfactory receptor, family 2, subfamily B, member 2 241472 5 3 5 0 0 3 2 0 0 0 0.23 0.85 -4832 KCTD21 potassium channel tetramerisation domain containing 21 176288 2 2 2 2 0 1 0 0 1 0 0.23 0.85 -4833 HTRA2 HtrA serine peptidase 2 288568 4 4 4 0 1 1 0 0 2 0 0.23 0.85 -4834 CHRDL2 chordin-like 2 296912 4 4 4 2 1 2 0 0 1 0 0.23 0.85 -4835 SAP30BP SAP30 binding protein 217504 2 2 2 0 0 1 0 0 1 0 0.23 0.85 -4836 RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 106400 1 1 1 0 0 0 1 0 0 0 0.23 0.85 -4837 MRPL47 mitochondrial ribosomal protein L47 174944 3 3 2 0 0 2 1 0 0 0 0.23 0.85 -4838 HDGFL1 hepatoma derived growth factor-like 1 68376 1 1 1 2 0 0 0 0 1 0 0.23 0.85 -4839 KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 239792 2 2 2 2 0 1 0 0 1 0 0.23 0.85 -4840 C5orf38 chromosome 5 open reading frame 38 66192 1 1 1 0 0 0 0 0 1 0 0.23 0.85 -4841 ZNF410 zinc finger protein 410 331744 3 3 3 0 0 3 0 0 0 0 0.23 0.85 -4842 CDH16 cadherin 16, KSP-cadherin 569456 8 7 8 2 3 4 1 0 0 0 0.23 0.85 -4843 AFAP1 actin filament associated protein 1 501184 5 5 5 2 1 1 2 0 1 0 0.23 0.85 -4844 MIA melanoma inhibitory activity 92288 1 1 1 0 0 0 0 0 1 0 0.23 0.85 -4845 AMZ1 archaelysin family metallopeptidase 1 257084 4 4 4 0 2 2 0 0 0 0 0.23 0.85 -4846 FAM48A family with sequence similarity 48, member A 538800 6 5 6 1 0 3 2 0 1 0 0.23 0.85 -4847 ZNF498 zinc finger protein 498 370720 4 4 4 0 3 1 0 0 0 0 0.23 0.85 -4848 TTBK1 tau tubulin kinase 1 698344 8 6 7 2 3 1 3 0 1 0 0.23 0.85 -4849 PLCG2 phospholipase C, gamma 2 (phosphatidylinositol-specific) 879424 13 9 11 1 8 2 1 0 2 0 0.23 0.85 -4850 DCLRE1C DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae) 478240 4 4 4 0 1 1 1 0 1 0 0.23 0.85 -4851 DNAJC5G DnaJ (Hsp40) homolog, subfamily C, member 5 gamma 131264 2 2 2 0 0 2 0 0 0 0 0.23 0.85 -4852 SYCE2 synaptonemal complex central element protein 2 152544 2 2 2 0 1 1 0 0 0 0 0.23 0.85 -4853 CCDC6 coiled-coil domain containing 6 311472 3 3 3 1 0 1 1 0 1 0 0.23 0.85 -4854 MOG myelin oligodendrocyte glycoprotein 137172 3 3 3 3 1 0 2 0 0 0 0.23 0.85 -4855 NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 420980 3 3 3 1 0 2 0 0 1 0 0.23 0.85 -4856 TMEM2 transmembrane protein 2 950656 14 9 14 1 2 9 2 0 1 0 0.23 0.85 -4857 C20orf112 chromosome 20 open reading frame 112 291648 3 3 3 2 2 0 0 0 1 0 0.23 0.85 -4858 EFHD1 EF-hand domain family, member D1 115248 2 2 2 0 2 0 0 0 0 0 0.23 0.85 -4859 ZBTB32 zinc finger and BTB domain containing 32 323428 6 5 6 0 1 4 1 0 0 0 0.23 0.85 -4860 RPL31 ribosomal protein L31 100576 1 1 1 0 0 0 1 0 0 0 0.23 0.85 -4861 NINJ2 ninjurin 2 129696 3 2 3 0 1 2 0 0 0 0 0.23 0.85 -4862 FOXP2 forkhead box P2 515152 6 5 6 1 0 3 3 0 0 0 0.23 0.85 -4863 TRAF6 TNF receptor-associated factor 6 356832 4 4 4 1 2 1 0 0 1 0 0.23 0.85 -4864 FAM96A family with sequence similarity 96, member A 112672 1 1 1 0 0 0 0 0 1 0 0.23 0.85 -4865 S100Z S100 calcium binding protein Z 68992 1 1 1 0 0 1 0 0 0 0 0.23 0.85 -4866 MED23 mediator complex subunit 23 952448 9 6 9 3 2 4 1 0 2 0 0.23 0.85 -4867 RAB39B RAB39B, member RAS oncogene family 145600 2 2 2 0 0 1 1 0 0 0 0.23 0.85 -4868 TAS2R38 taste receptor, type 2, member 38 225344 3 3 3 0 0 3 0 0 0 0 0.23 0.85 -4869 OAZ3 ornithine decarboxylase antizyme 3 138432 1 1 1 0 0 0 0 0 1 0 0.23 0.85 -4870 MRPL53 mitochondrial ribosomal protein L53 78624 2 2 2 0 0 1 1 0 0 0 0.23 0.85 -4871 IGSF10 immunoglobulin superfamily, member 10 1768704 21 13 21 4 8 9 3 0 1 0 0.23 0.85 -4872 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 254016 3 3 3 2 1 2 0 0 0 0 0.23 0.85 -4873 TIMP3 TIMP metallopeptidase inhibitor 3 (Sorsby fundus dystrophy, pseudoinflammatory) 124264 3 3 3 0 1 2 0 0 0 0 0.23 0.85 -4874 OR2J3 olfactory receptor, family 2, subfamily J, member 3 207368 3 3 3 2 0 2 1 0 0 0 0.23 0.85 -4875 MYRIP myosin VIIA and Rab interacting protein 592256 6 6 6 2 2 2 2 0 0 0 0.23 0.85 -4876 C17orf39 chromosome 17 open reading frame 39 136560 1 1 1 1 0 0 0 0 1 0 0.23 0.85 -4877 MBNL3 muscleblind-like 3 (Drosophila) 259392 2 2 2 0 0 1 0 0 1 0 0.23 0.85 -4878 EZH1 enhancer of zeste homolog 1 (Drosophila) 519680 5 5 5 1 2 1 1 0 1 0 0.23 0.85 -4879 PLA2R1 phospholipase A2 receptor 1, 180kDa 987784 11 8 11 6 4 3 3 0 1 0 0.23 0.85 -4880 ABCA6 ATP-binding cassette, sub-family A (ABC1), member 6 1121344 17 8 17 0 3 6 6 0 2 0 0.23 0.85 -4881 TTC5 tetratricopeptide repeat domain 5 305312 3 3 3 0 1 1 0 1 0 0 0.23 0.85 -4882 ARHGAP21 Rho GTPase activating protein 21 1338848 13 10 13 4 2 8 1 1 1 0 0.23 0.85 -4883 PTMS parathymosin 44128 1 1 1 1 0 1 0 0 0 0 0.23 0.85 -4884 RET ret proto-oncogene 691608 8 8 8 1 5 1 0 1 1 0 0.23 0.85 -4885 FBXO42 F-box protein 42 490560 6 6 6 1 1 5 0 0 0 0 0.23 0.85 -4886 ASNSD1 asparagine synthetase domain containing 1 435456 4 4 4 0 1 1 1 0 1 0 0.23 0.85 -4887 TMEM109 transmembrane protein 109 158032 2 2 2 1 1 1 0 0 0 0 0.23 0.85 -4888 OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 256032 3 2 3 0 1 0 1 0 1 0 0.23 0.85 -4889 C6orf150 chromosome 6 open reading frame 150 274708 4 4 4 0 1 0 2 0 1 0 0.23 0.85 -4890 SDHAF2 115808 2 2 2 0 1 1 0 0 0 0 0.23 0.85 -4891 TMIGD2 transmembrane and immunoglobulin domain containing 2 168256 3 3 3 0 1 2 0 0 0 0 0.23 0.85 -4892 KCTD18 potassium channel tetramerisation domain containing 18 292320 4 4 4 0 3 0 0 0 1 0 0.23 0.85 -4893 EFHA1 EF-hand domain family, member A1 285180 3 3 3 2 0 0 2 0 1 0 0.23 0.85 -4894 GNG7 guanine nucleotide binding protein (G protein), gamma 7 36600 1 1 1 0 0 0 1 0 0 0 0.23 0.85 -4895 CECR5 cat eye syndrome chromosome region, candidate 5 271516 3 3 3 0 1 1 0 0 1 0 0.23 0.85 -4896 MSR1 macrophage scavenger receptor 1 322560 4 3 4 3 0 1 3 0 0 0 0.23 0.85 -4897 AMBN ameloblastin (enamel matrix protein) 303072 3 3 3 1 0 3 0 0 0 0 0.23 0.85 -4898 HIST1H2BK histone cluster 1, H2bk 86240 2 2 2 2 1 1 0 0 0 0 0.23 0.85 -4899 MOS v-mos Moloney murine sarcoma viral oncogene homolog 226436 3 3 3 2 3 0 0 0 0 0 0.23 0.85 -4900 LRRC39 leucine rich repeat containing 39 232960 2 2 2 0 0 0 1 0 1 0 0.23 0.85 -4901 FAM71A family with sequence similarity 71, member A 400736 6 5 5 1 3 2 1 0 0 0 0.23 0.85 -4902 MIP major intrinsic protein of lens fiber 178640 2 2 2 0 1 1 0 0 0 0 0.23 0.85 -4903 EDDM3A 100352 1 1 1 0 0 0 0 0 1 0 0.23 0.85 -4904 F11 coagulation factor XI (plasma thromboplastin antecedent) 433216 4 4 4 1 0 3 1 0 0 0 0.23 0.85 -4905 ECHDC2 enoyl Coenzyme A hydratase domain containing 2 173628 3 3 3 0 2 1 0 0 0 0 0.23 0.85 -4906 RAD18 RAD18 homolog (S. cerevisiae) 344960 3 3 3 1 1 1 0 0 1 0 0.23 0.85 -4907 SPANXN5 SPANX family, member N5 50848 1 1 1 0 1 0 0 0 0 0 0.23 0.85 -4908 TDRD5 tudor domain containing 5 674240 6 6 6 1 2 2 1 0 1 0 0.23 0.85 -4909 SLC34A2 solute carrier family 34 (sodium phosphate), member 2 475104 5 5 5 4 3 1 0 1 0 0 0.23 0.85 -4910 OR10R2 olfactory receptor, family 10, subfamily R, member 2 226688 2 2 2 0 0 0 1 0 1 0 0.23 0.85 -4911 CEBPZ CCAAT/enhancer binding protein zeta 723296 5 5 5 2 0 3 1 0 1 0 0.23 0.85 -4912 ATF1 activating transcription factor 1 188160 2 2 2 0 0 2 0 0 0 0 0.23 0.85 -4913 C17orf103 52472 1 1 1 0 1 0 0 0 0 0 0.23 0.85 -4914 DENND3 DENN/MADD domain containing 3 809612 10 9 10 2 6 1 2 1 0 0 0.23 0.85 -4915 SLC38A6 solute carrier family 38, member 6 321440 4 4 4 0 0 2 2 0 0 0 0.23 0.85 -4916 KIAA1467 KIAA1467 421120 7 4 7 1 3 3 0 0 1 0 0.23 0.85 -4917 ZNF600 zinc finger protein 600 486752 9 5 9 0 1 6 1 0 1 0 0.23 0.85 -4918 NICN1 nicolin 1 148932 2 2 2 1 1 0 0 1 0 0 0.23 0.85 -4919 RHCE Rh blood group, CcEe antigens 289856 4 4 4 2 0 3 1 0 0 0 0.23 0.85 -4920 P2RX7 purinergic receptor P2X, ligand-gated ion channel, 7 400648 3 3 3 0 0 0 2 0 1 0 0.23 0.85 -4921 ISCU iron-sulfur cluster scaffold homolog (E. coli) 105756 1 1 1 1 1 0 0 0 0 0 0.23 0.85 -4922 IFIT3 interferon-induced protein with tetratricopeptide repeats 3 333760 4 4 4 0 1 1 2 0 0 0 0.23 0.85 -4923 GHITM growth hormone inducible transmembrane protein 239680 2 2 2 1 0 1 0 0 1 0 0.23 0.85 -4924 BAIAP2L1 BAI1-associated protein 2-like 1 344288 4 4 4 4 0 1 3 0 0 0 0.23 0.85 -4925 C19orf10 chromosome 19 open reading frame 10 103012 1 1 1 0 0 0 0 0 1 0 0.23 0.85 -4926 SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa 69216 1 1 1 0 1 0 0 0 0 0 0.23 0.85 -4927 AK5 adenylate kinase 5 388432 5 5 5 2 2 2 1 0 0 0 0.23 0.85 -4928 MEGF10 multiple EGF-like-domains 10 786828 7 7 7 3 1 1 4 0 1 0 0.23 0.85 -4929 PLEKHO1 pleckstrin homology domain containing, family O member 1 273280 4 4 4 2 2 1 1 0 0 0 0.23 0.85 -4930 PCDHGA3 protocadherin gamma subfamily A, 3 643328 8 8 8 1 5 1 1 0 1 0 0.23 0.85 -4931 KCNQ1 potassium voltage-gated channel, KQT-like subfamily, member 1 344208 3 3 3 1 0 0 1 0 2 0 0.23 0.85 -4932 IDO1 268072 4 3 4 0 2 2 0 0 0 0 0.23 0.85 -4933 HIST1H2BM histone cluster 1, H2bm 86156 2 2 2 1 1 0 1 0 0 0 0.23 0.85 -4934 TGM7 transglutaminase 7 488768 7 6 7 1 4 2 1 0 0 0 0.23 0.85 -4935 ANK3 ankyrin 3, node of Ranvier (ankyrin G) 3054716 27 19 27 3 8 13 3 0 3 0 0.23 0.85 -4936 IL18RAP interleukin 18 receptor accessory protein 412160 4 4 4 1 1 1 2 0 0 0 0.23 0.85 -4937 ALDOC aldolase C, fructose-bisphosphate 252448 3 3 3 0 3 0 0 0 0 0 0.23 0.85 -4938 EGFR epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) 890288 12 10 12 3 8 3 1 0 0 0 0.23 0.85 -4939 PLTP phospholipid transfer protein 339560 7 5 7 1 3 3 1 0 0 0 0.23 0.85 -4940 KTN1 kinectin 1 (kinesin receptor) 953120 7 7 7 3 2 4 1 0 0 0 0.23 0.85 -4941 C16orf93 196296 1 1 1 1 0 0 0 0 1 0 0.23 0.85 -4942 C13orf16 chromosome 13 open reading frame 16 106624 2 2 2 2 1 0 1 0 0 0 0.23 0.85 -4943 CCR5 chemokine (C-C motif) receptor 5 93544 1 1 1 0 0 1 0 0 0 0 0.23 0.85 -4944 PDE4DIP phosphodiesterase 4D interacting protein (myomegalin) 1327452 12 11 12 4 3 6 2 0 1 0 0.23 0.85 -4945 LTBR lymphotoxin beta receptor (TNFR superfamily, member 3) 282520 3 3 3 1 0 1 0 0 2 0 0.23 0.85 -4946 ANO5 633920 8 5 8 4 0 5 3 0 0 0 0.23 0.85 -4947 POU5F2 POU domain class 5, transcription factor 2 221984 2 2 2 1 0 0 1 0 1 0 0.23 0.85 -4948 POM121L12 193592 4 4 4 1 3 1 0 0 0 0 0.23 0.85 -4949 C3orf38 chromosome 3 open reading frame 38 224448 2 2 2 0 1 0 0 0 1 0 0.23 0.85 -4950 ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 255248 6 5 6 4 3 2 1 0 0 0 0.23 0.85 -4951 SULT1B1 sulfotransferase family, cytosolic, 1B, member 1 205856 4 3 4 0 1 2 1 0 0 0 0.23 0.85 -4952 PCDHAC2 protocadherin alpha subfamily C, 2 652652 8 8 7 2 6 1 1 0 0 0 0.23 0.85 -4953 RPS4X ribosomal protein S4, X-linked 183680 2 2 2 0 1 0 1 0 0 0 0.23 0.85 -4954 TATDN1 TatD DNase domain containing 1 211008 3 2 3 0 1 0 1 0 1 0 0.23 0.85 -4955 IFNA21 interferon, alpha 21 128576 1 1 1 0 0 1 0 0 0 0 0.24 0.86 -4956 TTC17 tetratricopeptide repeat domain 17 775320 5 5 5 2 0 2 1 0 2 0 0.24 0.86 -4957 ADRB1 adrenergic, beta-1-, receptor 161812 3 3 3 1 1 1 0 0 1 0 0.24 0.86 -4958 ACVRL1 activin A receptor type II-like 1 343424 4 4 4 0 3 1 0 0 0 0 0.24 0.86 -4959 MATN3 matrilin 3 283584 3 3 3 0 0 1 1 0 1 0 0.24 0.86 -4960 KRTAP26-1 keratin associated protein 26-1 142688 2 2 2 0 1 1 0 0 0 0 0.24 0.86 -4961 G2E3 487648 4 4 4 0 1 0 3 0 0 0 0.24 0.86 -4962 RINT1 RAD50 interactor 1 542472 4 4 4 0 0 1 1 0 2 0 0.24 0.86 -4963 CLCA4 chloride channel, calcium activated, family member 4 629968 6 6 6 1 3 2 0 0 1 0 0.24 0.86 -4964 OR56B1 olfactory receptor, family 56, subfamily B, member 1 219296 2 2 2 0 0 2 0 0 0 0 0.24 0.86 -4965 OR6B2 olfactory receptor, family 6, subfamily B, member 2 210980 3 3 3 0 1 0 2 0 0 0 0.24 0.86 -4966 TSPAN9 tetraspanin 9 147912 2 2 2 1 1 1 0 0 0 0 0.24 0.86 -4967 TUBAL3 tubulin, alpha-like 3 303968 4 4 4 1 2 2 0 0 0 0 0.24 0.86 -4968 TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 427784 5 5 5 0 2 0 2 0 1 0 0.24 0.86 -4969 ARL8B ADP-ribosylation factor-like 8B 131516 2 2 2 0 1 0 1 0 0 0 0.24 0.86 -4970 LRRC58 leucine rich repeat containing 58 164668 2 2 2 0 0 0 1 0 1 0 0.24 0.86 -4971 GULP1 GULP, engulfment adaptor PTB domain containing 1 213920 2 2 2 1 0 0 1 0 1 0 0.24 0.86 -4972 UGCG UDP-glucose ceramide glucosyltransferase 259632 2 2 2 2 0 0 1 0 1 0 0.24 0.86 -4973 ZNF669 zinc finger protein 669 297500 2 2 2 0 1 0 0 1 0 0 0.24 0.86 -4974 OXER1 oxoeicosanoid (OXE) receptor 1 256896 3 3 3 0 1 1 0 0 1 0 0.24 0.86 -4975 NUDT15 nudix (nucleoside diphosphate linked moiety X)-type motif 15 100512 2 2 1 0 0 2 0 0 0 0 0.24 0.86 -4976 TNNI1 troponin I type 1 (skeletal, slow) 131712 2 2 2 0 2 0 0 0 0 0 0.24 0.86 -4977 DRD3 dopamine receptor D3 274848 3 3 3 1 0 2 0 0 1 0 0.24 0.86 -4978 CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1 256928 4 4 4 0 2 2 0 0 0 0 0.24 0.86 -4979 GPRC6A G protein-coupled receptor, family C, group 6, member A 628320 8 6 8 0 1 3 4 0 0 0 0.24 0.86 -4980 DICER1 dicer 1, ribonuclease type III 1315552 8 7 8 1 1 2 2 0 3 0 0.24 0.86 -4981 PPAPDC1A phosphatidic acid phosphatase type 2 domain containing 1A 175616 2 2 2 1 1 1 0 0 0 0 0.24 0.86 -4982 CHRM3 cholinergic receptor, muscarinic 3 397124 4 4 4 0 1 0 1 0 2 0 0.24 0.86 -4983 C6orf221 chromosome 6 open reading frame 221 148596 2 2 2 1 2 0 0 0 0 0 0.24 0.86 -4984 IDE insulin-degrading enzyme 684992 7 6 7 3 2 3 1 0 1 0 0.24 0.86 -4985 HNRNPF 280448 4 4 4 0 1 1 1 0 1 0 0.24 0.86 -4986 SYT4 synaptotagmin IV 289856 5 3 5 2 0 3 2 0 0 0 0.24 0.86 -4987 ZNF100 zinc finger protein 100 369376 3 3 3 0 0 1 2 0 0 0 0.24 0.86 -4988 BIRC2 baculoviral IAP repeat-containing 2 423136 4 4 4 0 1 2 1 0 0 0 0.24 0.86 -4989 SLC35D1 solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 249984 3 3 3 0 0 1 1 0 1 0 0.24 0.86 -4990 DISC1 disrupted in schizophrenia 1 607936 7 6 7 1 1 5 0 0 1 0 0.24 0.86 -4991 SCYL3 SCY1-like 3 (S. cerevisiae) 510944 6 5 6 2 2 2 1 0 1 0 0.24 0.86 -4992 ZNF397 zinc finger protein 397 192192 2 2 2 0 0 1 0 0 1 0 0.24 0.86 -4993 RASL11A RAS-like, family 11, member A 152848 2 2 2 1 0 2 0 0 0 0 0.24 0.86 -4994 C11orf80 chromosome 11 open reading frame 80 291184 2 2 2 0 1 0 0 0 1 0 0.24 0.86 -4995 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like 832672 6 6 5 3 3 2 0 0 1 0 0.24 0.86 -4996 MTX3 metaxin 3 199224 3 3 3 0 1 2 0 0 0 0 0.24 0.86 -4997 IFNAR1 interferon (alpha, beta and omega) receptor 1 382792 3 3 3 0 0 1 1 0 1 0 0.24 0.86 -4998 RSAD2 radical S-adenosyl methionine domain containing 2 248640 2 2 2 2 2 0 0 0 0 0 0.24 0.86 -4999 H2AFY2 H2A histone family, member Y2 257824 4 4 4 0 1 0 2 0 1 0 0.24 0.86 -5000 PKNOX2 PBX/knotted 1 homeobox 2 326816 3 3 3 1 0 2 0 0 1 0 0.24 0.86 -5001 OR13C5 olfactory receptor, family 13, subfamily C, member 5 215264 2 2 2 0 0 1 1 0 0 0 0.24 0.86 -5002 DENND5B 826416 6 6 6 2 2 2 1 0 1 0 0.24 0.86 -5003 DNAJC8 DnaJ (Hsp40) homolog, subfamily C, member 8 178752 2 2 2 1 0 0 1 0 1 0 0.24 0.86 -5004 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 215864 3 3 3 1 1 1 1 0 0 0 0.24 0.86 -5005 RARRES1 retinoic acid receptor responder (tazarotene induced) 1 143136 2 2 2 0 2 0 0 0 0 0 0.24 0.86 -5006 TTC13 tetratricopeptide repeat domain 13 537600 7 5 7 2 1 1 3 0 0 2 0.24 0.86 -5007 CCDC47 coiled-coil domain containing 47 336000 3 3 3 0 1 1 0 0 1 0 0.24 0.86 -5008 KIAA0753 KIAA0753 652616 10 8 10 1 4 4 0 1 1 0 0.24 0.86 -5009 TAF7L TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa 322784 4 3 4 0 2 0 1 0 1 0 0.24 0.86 -5010 CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2 346752 5 5 5 0 2 2 1 0 0 0 0.24 0.86 -5011 ZNF529 zinc finger protein 529 311136 4 4 4 2 0 4 0 0 0 0 0.24 0.86 -5012 WDR75 WD repeat domain 75 565008 5 5 4 1 0 4 1 0 0 0 0.24 0.86 -5013 CD209 CD209 molecule 278432 3 3 3 2 1 2 0 0 0 0 0.24 0.86 -5014 SHCBP1 SHC SH2-domain binding protein 1 454916 4 4 4 1 1 2 1 0 0 0 0.24 0.86 -5015 MAPRE3 microtubule-associated protein, RP/EB family, member 3 194880 2 2 2 1 1 0 0 0 1 0 0.24 0.86 -5016 PON2 paraoxonase 2 229152 2 2 2 0 0 1 1 0 0 0 0.24 0.86 -5017 RHOXF2B Rhox homeobox family, member 2B 171496 3 3 3 1 3 0 0 0 0 0 0.24 0.86 -5018 PDGFD platelet derived growth factor D 255584 3 3 3 1 2 0 1 0 0 0 0.24 0.86 -5019 CHIA chitinase, acidic 330400 5 4 5 1 3 1 1 0 0 0 0.24 0.86 -5020 C11orf65 chromosome 11 open reading frame 65 218176 2 2 2 0 0 1 1 0 0 0 0.24 0.86 -5021 BIK BCL2-interacting killer (apoptosis-inducing) 86580 1 1 1 0 0 1 0 0 0 0 0.24 0.86 -5022 PDE8B phosphodiesterase 8B 542332 7 5 7 3 4 3 0 0 0 0 0.24 0.86 -5023 C16orf13 chromosome 16 open reading frame 13 56756 1 1 1 0 0 1 0 0 0 0 0.24 0.86 -5024 KCNMB4 potassium large conductance calcium-activated channel, subfamily M, beta member 4 137592 3 3 2 0 0 2 1 0 0 0 0.24 0.86 -5025 DDX24 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 585088 5 4 5 0 2 1 0 0 2 0 0.24 0.86 -5026 FAM8A1 family with sequence similarity 8, member A1 172284 3 3 3 0 0 2 1 0 0 0 0.24 0.86 -5027 AP4M1 adaptor-related protein complex 4, mu 1 subunit 310296 3 3 3 1 1 1 0 0 1 0 0.24 0.86 -5028 ADAM28 ADAM metallopeptidase domain 28 554624 7 5 7 3 1 4 1 0 1 0 0.24 0.86 -5029 RSPH1 radial spoke head 1 homolog (Chlamydomonas) 216384 5 4 5 2 3 2 0 0 0 0 0.24 0.86 -5030 SPATA19 spermatogenesis associated 19 118272 2 2 2 0 1 0 0 0 1 0 0.24 0.87 -5031 RPS11 ribosomal protein S11 111328 1 1 1 0 0 0 0 0 1 0 0.24 0.87 -5032 C2orf44 chromosome 2 open reading frame 44 487872 4 4 4 2 1 0 3 0 0 0 0.24 0.87 -5033 RSPO1 R-spondin homolog (Xenopus laevis) 181468 2 2 2 1 2 0 0 0 0 0 0.24 0.87 -5034 MTMR8 myotubularin related protein 8 486304 7 4 7 1 0 4 2 0 1 0 0.24 0.87 -5035 CSNK2A2 casein kinase 2, alpha prime polypeptide 221536 2 2 2 1 0 2 0 0 0 0 0.24 0.87 -5036 CEACAM18 carcinoembryonic antigen-related cell adhesion molecule 18 270368 4 4 4 0 1 2 1 0 0 0 0.24 0.87 -5037 PQLC2 PQ loop repeat containing 2 201740 3 3 3 0 2 0 0 0 1 0 0.24 0.87 -5038 CCDC90B coiled-coil domain containing 90B 179424 2 2 2 0 1 0 1 0 0 0 0.24 0.87 -5039 ZDHHC24 zinc finger, DHHC-type containing 24 141740 3 3 3 0 2 1 0 0 0 0 0.24 0.87 -5040 CLSTN3 calsyntenin 3 644816 8 7 8 4 3 4 0 0 1 0 0.24 0.87 -5041 MT1B metallothionein 1B 44352 1 1 1 0 0 1 0 0 0 0 0.24 0.87 -5042 VSX2 visual system homeobox 2 145724 2 2 2 0 1 1 0 0 0 0 0.24 0.87 -5043 CDH20 cadherin 20, type 2 520324 9 7 8 3 1 6 1 0 1 0 0.24 0.87 -5044 KRTAP17-1 keratin associated protein 17-1 70380 1 1 1 0 1 0 0 0 0 0 0.24 0.87 -5045 C6orf162 chromosome 6 open reading frame 162 67648 1 1 1 0 0 0 0 0 1 0 0.24 0.87 -5046 LAMB1 laminin, beta 1 1230432 8 8 8 3 4 1 2 0 1 0 0.24 0.87 -5047 SIGLEC10 sialic acid binding Ig-like lectin 10 478912 7 7 7 3 4 3 0 0 0 0 0.24 0.87 -5048 NRBP1 nuclear receptor binding protein 1 375424 3 3 3 0 1 1 1 0 0 0 0.24 0.87 -5049 C4orf35 chromosome 4 open reading frame 35 267008 2 2 2 0 1 0 0 0 1 0 0.24 0.87 -5050 RAB11B RAB11B, member RAS oncogene family 142648 2 2 2 0 1 1 0 0 0 0 0.24 0.87 -5051 CCDC71 coiled-coil domain containing 71 308672 4 4 4 0 3 1 0 0 0 0 0.24 0.87 -5052 C17orf62 chromosome 17 open reading frame 62 125816 2 2 2 0 0 2 0 0 0 0 0.24 0.87 -5053 PCDP1 387296 4 4 4 4 1 2 1 0 0 0 0.24 0.87 -5054 XKR9 XK, Kell blood group complex subunit-related family, member 9 254016 3 3 3 2 0 1 2 0 0 0 0.24 0.87 -5055 NPHP1 nephronophthisis 1 (juvenile) 511168 5 5 5 2 0 1 3 0 1 0 0.24 0.87 -5056 SLC4A1 solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) 617104 6 6 6 3 2 3 1 0 0 0 0.24 0.87 -5057 ACACA acetyl-Coenzyme A carboxylase alpha 1664992 18 12 17 6 9 3 4 0 2 0 0.24 0.87 -5058 GDF6 growth differentiation factor 6 184632 3 3 3 2 2 1 0 0 0 0 0.24 0.87 -5059 OR4D6 olfactory receptor, family 4, subfamily D, member 6 212576 3 3 3 0 0 3 0 0 0 0 0.24 0.87 -5060 POLB polymerase (DNA directed), beta 238336 3 2 3 0 1 1 0 0 1 0 0.24 0.87 -5061 C10orf58 chromosome 10 open reading frame 58 159040 2 2 2 1 1 0 0 0 1 0 0.24 0.87 -5062 PCDHGB7 protocadherin gamma subfamily B, 7 609320 12 8 12 1 6 4 2 0 0 0 0.24 0.87 -5063 ZMAT5 zinc finger, matrin type 5 108136 1 1 1 0 0 0 0 0 1 0 0.24 0.87 -5064 GSG1 germ cell associated 1 222096 3 3 3 1 1 0 2 0 0 0 0.24 0.87 -5065 KIAA1430 KIAA1430 360128 6 4 6 0 4 0 2 0 0 0 0.24 0.87 -5066 C1orf27 chromosome 1 open reading frame 27 296192 3 3 3 0 1 1 0 0 1 0 0.24 0.87 -5067 PCSK5 proprotein convertase subtilisin/kexin type 5 629748 6 6 6 1 3 1 1 0 1 0 0.24 0.87 -5068 TMX3 315896 3 3 3 2 1 1 0 0 1 0 0.24 0.87 -5069 ZNF780B zinc finger protein 780B 564032 6 6 6 0 2 2 1 0 1 0 0.24 0.87 -5070 TMEM220 96544 1 1 1 0 0 0 1 0 0 0 0.24 0.87 -5071 CLIP1 CAP-GLY domain containing linker protein 1 980984 11 10 11 3 7 1 2 0 1 0 0.24 0.87 -5072 EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 1092672 11 10 11 6 2 4 4 0 1 0 0.24 0.87 -5073 ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase 407680 4 4 4 0 2 0 1 0 1 0 0.24 0.87 -5074 TNFSF12 tumor necrosis factor (ligand) superfamily, member 12 130688 2 2 2 1 0 2 0 0 0 0 0.24 0.87 -5075 SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 393344 4 4 4 0 1 1 1 0 1 0 0.24 0.87 -5076 TIMM10 translocase of inner mitochondrial membrane 10 homolog (yeast) 62944 1 1 1 1 0 1 0 0 0 0 0.24 0.87 -5077 TP53I3 tumor protein p53 inducible protein 3 228256 2 2 2 0 1 1 0 0 0 0 0.24 0.87 -5078 PEA15 phosphoprotein enriched in astrocytes 15 90720 1 1 1 0 1 0 0 0 0 0 0.24 0.87 -5079 NMD3 NMD3 homolog (S. cerevisiae) 352128 5 4 5 2 3 0 2 0 0 0 0.24 0.87 -5080 DRD5 dopamine receptor D5 298004 6 5 6 2 3 1 2 0 0 0 0.24 0.87 -5081 HOMER1 homer homolog 1 (Drosophila) 246624 3 3 3 2 0 1 2 0 0 0 0.24 0.87 -5082 ZNF69 zinc finger protein 69 103936 1 1 1 0 0 1 0 0 0 0 0.24 0.87 -5083 MOSPD1 motile sperm domain containing 1 148288 2 2 2 0 1 0 1 0 0 0 0.24 0.87 -5084 LRRC59 leucine rich repeat containing 59 203048 3 3 3 0 1 1 1 0 0 0 0.24 0.87 -5085 CHD2 chromodomain helicase DNA binding protein 2 1263864 11 10 11 1 4 4 3 0 0 0 0.24 0.87 -5086 MMD2 monocyte to macrophage differentiation-associated 2 172744 3 3 3 0 3 0 0 0 0 0 0.24 0.87 -5087 CHRNB2 cholinergic receptor, nicotinic, beta 2 (neuronal) 281176 5 5 5 3 4 1 0 0 0 0 0.24 0.87 -5088 CCL13 chemokine (C-C motif) ligand 13 69216 1 1 1 0 0 0 1 0 0 0 0.24 0.87 -5089 ABHD2 abhydrolase domain containing 2 294336 4 4 4 1 1 1 1 0 1 0 0.25 0.87 -5090 CD160 CD160 molecule 125888 2 2 2 0 0 1 1 0 0 0 0.25 0.87 -5091 DCD dermcidin 76216 1 1 1 1 0 0 1 0 0 0 0.25 0.87 -5092 TMEM165 transmembrane protein 165 176512 2 2 2 0 1 0 1 0 0 0 0.25 0.87 -5093 SNCA synuclein, alpha (non A4 component of amyloid precursor) 99232 1 1 1 0 0 1 0 0 0 0 0.25 0.87 -5094 SRP54 signal recognition particle 54kDa 352800 3 3 3 1 0 1 1 0 1 0 0.25 0.87 -5095 PMM1 phosphomannomutase 1 165592 3 3 3 1 1 1 1 0 0 0 0.25 0.87 -5096 NOXA1 NADPH oxidase activator 1 176100 1 1 1 1 0 0 0 0 1 0 0.25 0.87 -5097 SPON1 spondin 1, extracellular matrix protein 452124 5 4 5 0 1 1 1 0 0 2 0.25 0.87 -5098 ZNF367 zinc finger protein 367 165536 3 3 3 0 2 1 0 0 0 0 0.25 0.87 -5099 COG7 component of oligomeric golgi complex 7 533344 6 6 6 3 3 1 1 0 1 0 0.25 0.87 -5100 SDR16C5 213696 3 3 3 0 0 3 0 0 0 0 0.25 0.87 -5101 WBP2NL WBP2 N-terminal like 213696 2 2 2 1 1 0 1 0 0 0 0.25 0.87 -5102 NUDT9 nudix (nucleoside diphosphate linked moiety X)-type motif 9 243040 2 2 2 2 0 0 1 0 1 0 0.25 0.87 -5103 OSTC 104384 2 2 2 0 0 0 2 0 0 0 0.25 0.87 -5104 TUBA3E tubulin, alpha 3e 307552 5 5 5 1 4 1 0 0 0 0 0.25 0.87 -5105 MOBKL2A MOB1, Mps One Binder kinase activator-like 2A (yeast) 148512 2 2 2 0 0 0 1 0 1 0 0.25 0.87 -5106 OR14A16 olfactory receptor, family 14, subfamily A, member 16 208544 2 2 2 1 0 2 0 0 0 0 0.25 0.87 -5107 SLC15A2 solute carrier family 15 (H+/peptide transporter), member 2 510272 5 4 5 0 1 2 0 0 2 0 0.25 0.87 -5108 SLC38A1 solute carrier family 38, member 1 341376 5 3 5 0 2 1 0 1 1 0 0.25 0.87 -5109 HAMP hepcidin antimicrobial peptide 59808 1 1 1 0 0 0 0 0 1 0 0.25 0.87 -5110 DYNLRB2 dynein, light chain, roadblock-type 2 68768 1 1 1 0 0 0 0 0 1 0 0.25 0.87 -5111 CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 136640 2 2 2 2 0 1 0 0 1 0 0.25 0.87 -5112 PTCHD1 patched domain containing 1 588588 5 5 5 4 2 2 1 0 0 0 0.25 0.87 -5113 OR51F1 olfactory receptor, family 51, subfamily F, member 1 211232 3 3 3 0 1 2 0 0 0 0 0.25 0.87 -5114 MCRS1 microspherule protein 1 326128 3 3 3 0 1 1 0 0 1 0 0.25 0.87 -5115 ACTR1B ARP1 actin-related protein 1 homolog B, centractin beta (yeast) 251416 3 3 3 2 2 0 0 0 1 0 0.25 0.87 -5116 MMP10 matrix metallopeptidase 10 (stromelysin 2) 329504 4 3 4 0 1 1 0 0 2 0 0.25 0.87 -5117 KRTAP4-4 keratin associated protein 4-4 113120 1 1 1 0 1 0 0 0 0 0 0.25 0.87 -5118 APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 475840 6 6 6 1 2 3 0 0 1 0 0.25 0.87 -5119 HOXD1 homeobox D1 132160 3 3 3 0 1 1 0 0 1 0 0.25 0.87 -5120 CSNK2A1 casein kinase 2, alpha 1 polypeptide 274176 4 4 4 0 1 2 1 0 0 0 0.25 0.87 -5121 RAB15 RAB15, member RAS onocogene family 142912 2 2 2 0 1 0 1 0 0 0 0.25 0.87 -5122 ENTPD6 ectonucleoside triphosphate diphosphohydrolase 6 (putative function) 338464 3 3 3 2 1 0 1 0 1 0 0.25 0.87 -5123 MKLN1 muskelin 1, intracellular mediator containing kelch motifs 510720 6 5 6 1 1 3 2 0 0 0 0.25 0.87 -5124 BTN1A1 butyrophilin, subfamily 1, member A1 359156 5 5 5 1 2 2 1 0 0 0 0.25 0.87 -5125 C1orf115 chromosome 1 open reading frame 115 38276 1 1 1 0 1 0 0 0 0 0 0.25 0.87 -5126 ZNF705A zinc finger protein 705A 204988 2 2 2 0 1 0 1 0 0 0 0.25 0.87 -5127 AMDHD1 amidohydrolase domain containing 1 263424 4 3 4 3 0 2 1 0 1 0 0.25 0.87 -5128 RDH16 retinol dehydrogenase 16 (all-trans) 217280 3 3 3 1 1 1 1 0 0 0 0.25 0.87 -5129 SV2A synaptic vesicle glycoprotein 2A 510048 5 5 5 3 3 0 0 1 1 0 0.25 0.87 -5130 FBXO21 F-box protein 21 396648 4 4 4 2 1 2 0 0 1 0 0.25 0.87 -5131 ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein) 144640 2 2 2 0 0 0 2 0 0 0 0.25 0.87 -5132 SH3GL2 SH3-domain GRB2-like 2 241164 2 2 2 0 0 1 1 0 0 0 0.25 0.87 -5133 RWDD4A RWD domain containing 4A 130788 1 1 1 0 0 0 1 0 0 0 0.25 0.87 -5134 FBXW8 F-box and WD repeat domain containing 8 342632 4 4 4 0 2 1 1 0 0 0 0.25 0.87 -5135 LYSMD1 LysM, putative peptidoglycan-binding, domain containing 1 155904 2 2 2 0 1 1 0 0 0 0 0.25 0.87 -5136 RPUSD4 RNA pseudouridylate synthase domain containing 4 259196 3 3 3 0 1 2 0 0 0 0 0.25 0.87 -5137 STIM1 stromal interaction molecule 1 467120 4 4 4 2 1 1 2 0 0 0 0.25 0.87 -5138 BET1 blocked early in transport 1 homolog (S. cerevisiae) 83552 1 1 1 1 0 1 0 0 0 0 0.25 0.87 -5139 ELAVL1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) 224224 3 3 3 2 1 1 1 0 0 0 0.25 0.87 -5140 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 112252 2 2 2 0 0 1 1 0 0 0 0.25 0.87 -5141 HEATR4 HEAT repeat containing 4 672896 7 6 7 0 2 3 1 0 1 0 0.25 0.87 -5142 CCDC109A coiled-coil domain containing 109A 209216 3 3 3 0 1 0 2 0 0 0 0.25 0.87 -5143 HAUS1 190928 2 2 2 0 0 0 2 0 0 0 0.25 0.87 -5144 ZNF780A zinc finger protein 780A 414176 6 4 6 1 3 1 1 0 1 0 0.25 0.87 -5145 KRTAP5-3 keratin associated protein 5-3 161504 1 1 1 1 0 0 0 0 1 0 0.25 0.87 -5146 SUSD5 sushi domain containing 5 401856 3 3 3 2 2 0 0 0 1 0 0.25 0.87 -5147 HBXIP hepatitis B virus x interacting protein 119168 2 2 2 0 1 0 1 0 0 0 0.25 0.87 -5148 COMMD10 COMM domain containing 10 142688 2 2 2 0 0 2 0 0 0 0 0.25 0.87 -5149 ZNF187 zinc finger protein 187 222656 2 2 2 0 0 1 0 0 1 0 0.25 0.87 -5150 C14orf101 chromosome 14 open reading frame 101 453376 6 5 5 0 3 1 2 0 0 0 0.25 0.87 -5151 RECQL RecQ protein-like (DNA helicase Q1-like) 449344 4 4 4 0 2 0 1 0 1 0 0.25 0.87 -5152 ADAMTSL1 ADAMTS-like 1 1108260 11 10 11 3 3 3 3 0 2 0 0.25 0.87 -5153 EBP emopamil binding protein (sterol isomerase) 147664 2 2 2 1 1 1 0 0 0 0 0.25 0.88 -5154 SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 225344 2 2 2 0 0 0 2 0 0 0 0.25 0.88 -5155 DCK deoxycytidine kinase 181664 2 2 2 1 0 0 1 0 1 0 0.25 0.88 -5156 MMP11 matrix metallopeptidase 11 (stromelysin 3) 275212 4 4 4 2 1 1 2 0 0 0 0.25 0.88 -5157 GABRR2 gamma-aminobutyric acid (GABA) receptor, rho 2 338016 4 4 4 0 1 1 1 0 1 0 0.25 0.88 -5158 ZFP82 361760 5 4 5 2 1 2 2 0 0 0 0.25 0.88 -5159 PIK3C3 phosphoinositide-3-kinase, class 3 619136 7 6 7 2 1 3 3 0 0 0 0.25 0.88 -5160 TSPAN6 tetraspanin 6 150096 2 2 2 4 0 1 1 0 0 0 0.25 0.88 -5161 FGD4 FYVE, RhoGEF and PH domain containing 4 528864 4 4 4 1 0 3 1 0 0 0 0.25 0.88 -5162 BAT5 HLA-B associated transcript 5 298564 3 3 3 0 0 2 0 0 1 0 0.25 0.88 -5163 NXT1 NTF2-like export factor 1 95648 1 1 1 0 0 1 0 0 0 0 0.25 0.88 -5164 RASGEF1B RasGEF domain family, member 1B 330176 4 4 4 0 1 3 0 0 0 0 0.25 0.88 -5165 VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) 90944 1 1 1 0 0 0 1 0 0 0 0.25 0.88 -5166 TOMM34 translocase of outer mitochondrial membrane 34 209300 3 3 3 0 1 2 0 0 0 0 0.25 0.88 -5167 PMP2 peripheral myelin protein 2 92960 1 1 1 0 0 1 0 0 0 0 0.25 0.88 -5168 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 288512 3 3 3 3 3 0 0 0 0 0 0.25 0.88 -5169 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 377664 5 5 5 1 1 2 2 0 0 0 0.25 0.88 -5170 CLEC4A C-type lectin domain family 4, member A 165312 2 2 2 0 0 2 0 0 0 0 0.25 0.88 -5171 SH3BGRL2 SH3 domain binding glutamic acid-rich protein like 2 75096 1 1 1 1 0 1 0 0 0 0 0.25 0.88 -5172 MRPL33 mitochondrial ribosomal protein L33 64512 1 1 1 0 0 0 1 0 0 0 0.25 0.88 -5173 ALOX15B arachidonate 15-lipoxygenase, type B 425220 5 5 5 0 2 2 1 0 0 0 0.25 0.88 -5174 ZMYM3 zinc finger, MYM-type 3 913648 8 8 8 5 3 3 1 0 1 0 0.25 0.88 -5175 LRTOMT 133280 2 2 2 0 0 2 0 0 0 0 0.25 0.88 -5176 DPYSL2 dihydropyrimidinase-like 2 397600 5 5 5 1 5 0 0 0 0 0 0.25 0.88 -5177 C6orf129 chromosome 6 open reading frame 129 69440 1 1 1 1 0 0 1 0 0 0 0.25 0.88 -5178 KIAA1199 KIAA1199 933280 9 8 9 2 2 3 4 0 0 0 0.25 0.88 -5179 LTV1 LTV1 homolog (S. cerevisiae) 329728 2 2 2 0 0 0 1 0 1 0 0.25 0.88 -5180 CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 102620 1 1 1 0 0 0 1 0 0 0 0.25 0.88 -5181 RPE ribulose-5-phosphate-3-epimerase 172256 2 2 2 0 1 1 0 0 0 0 0.25 0.88 -5182 PRPF38B PRP38 pre-mRNA processing factor 38 (yeast) domain containing B 345624 4 4 3 0 2 0 0 1 1 0 0.25 0.88 -5183 PARP12 poly (ADP-ribose) polymerase family, member 12 412636 3 3 3 1 0 0 2 0 1 0 0.25 0.88 -5184 LRIG1 leucine-rich repeats and immunoglobulin-like domains 1 702464 5 5 5 2 1 0 2 0 2 0 0.25 0.88 -5185 SIRPG signal-regulatory protein gamma 263176 4 3 4 1 1 2 1 0 0 0 0.25 0.88 -5186 CCNH cyclin H 225792 2 2 2 1 1 0 0 0 1 0 0.25 0.88 -5187 CKAP4 cytoskeleton-associated protein 4 294812 5 5 5 1 4 1 0 0 0 0 0.25 0.88 -5188 MARCKS myristoylated alanine-rich protein kinase C substrate 70924 1 1 1 0 0 0 0 0 1 0 0.25 0.88 -5189 LY6D lymphocyte antigen 6 complex, locus D 81760 1 1 1 0 1 0 0 0 0 0 0.25 0.88 -5190 POC1B 328384 4 4 4 0 0 1 3 0 0 0 0.25 0.88 -5191 ATP6V0A4 ATPase, H+ transporting, lysosomal V0 subunit a4 583072 7 6 6 1 3 2 0 0 2 0 0.25 0.88 -5192 U2AF2 U2 small nuclear RNA auxiliary factor 2 321300 4 4 4 0 1 2 0 0 1 0 0.25 0.88 -5193 SVOPL SVOP-like 241248 3 3 3 2 3 0 0 0 0 0 0.25 0.88 -5194 SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 309700 4 4 4 2 1 2 1 0 0 0 0.25 0.88 -5195 CRYGN crystallin, gamma N 121664 1 1 1 0 0 0 0 0 1 0 0.25 0.88 -5196 GIGYF1 GRB10 interacting GYF protein 1 622208 5 5 5 0 1 1 0 0 3 0 0.25 0.88 -5197 BNIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 213784 2 2 2 0 1 0 1 0 0 0 0.25 0.88 -5198 RHOC ras homolog gene family, member C 133952 2 2 2 1 1 1 0 0 0 0 0.25 0.88 -5199 TNFRSF21 tumor necrosis factor receptor superfamily, member 21 417144 5 5 5 1 3 1 1 0 0 0 0.25 0.88 -5200 RTDR1 rhabdoid tumor deletion region gene 1 225352 4 3 4 0 2 2 0 0 0 0 0.25 0.88 -5201 CDCA2 cell division cycle associated 2 700672 6 5 6 1 1 4 0 0 1 0 0.25 0.88 -5202 PTBP2 polypyrimidine tract binding protein 2 368416 4 4 4 1 0 3 1 0 0 0 0.25 0.88 -5203 DCAF12L2 290472 5 5 5 5 3 2 0 0 0 0 0.25 0.88 -5204 LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) 156436 2 2 2 1 2 0 0 0 0 0 0.25 0.88 -5205 ZNF691 zinc finger protein 691 192416 2 2 2 0 1 0 1 0 0 0 0.25 0.88 -5206 GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 393092 4 4 4 4 3 1 0 0 0 0 0.25 0.88 -5207 C9orf41 chromosome 9 open reading frame 41 230272 3 3 3 0 1 1 1 0 0 0 0.25 0.88 -5208 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa 263872 3 3 3 0 0 2 1 0 0 0 0.25 0.88 -5209 TFDP1 transcription factor Dp-1 286048 4 4 4 0 0 0 4 0 0 0 0.25 0.88 -5210 TMEM92 transmembrane protein 92 112000 1 1 1 0 0 0 0 0 1 0 0.25 0.88 -5211 GUCA1C guanylate cyclase activator 1C 144704 1 1 1 0 0 1 0 0 0 0 0.25 0.88 -5212 MURC 247072 6 4 6 0 2 4 0 0 0 0 0.25 0.88 -5213 APH1B anterior pharynx defective 1 homolog B (C. elegans) 178752 3 3 3 0 0 3 0 0 0 0 0.25 0.88 -5214 HOXD9 homeobox D9 123768 3 2 3 0 0 2 0 0 1 0 0.25 0.88 -5215 ACTG2 actin, gamma 2, smooth muscle, enteric 260512 3 3 3 0 1 1 1 0 0 0 0.25 0.88 -5216 GSTA5 glutathione S-transferase A5 155232 2 2 2 0 0 2 0 0 0 0 0.25 0.88 -5217 CELF4 292672 4 4 4 3 2 0 2 0 0 0 0.25 0.88 -5218 IP6K1 301504 4 4 4 1 2 1 1 0 0 0 0.25 0.88 -5219 NR2E3 nuclear receptor subfamily 2, group E, member 3 217552 3 3 3 2 3 0 0 0 0 0 0.25 0.88 -5220 CCKBR cholecystokinin B receptor 293608 5 4 4 4 4 1 0 0 0 0 0.25 0.88 -5221 SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7 262304 2 2 2 1 0 0 0 0 2 0 0.25 0.88 -5222 TARP 116704 2 2 2 0 0 1 1 0 0 0 0.25 0.88 -5223 MTMR1 myotubularin related protein 1 427392 5 5 5 2 3 2 0 0 0 0 0.25 0.88 -5224 CST5 cystatin D 98784 1 1 1 0 0 1 0 0 0 0 0.25 0.88 -5225 TNIP3 TNFAIP3 interacting protein 3 228928 3 3 3 1 1 0 1 0 1 0 0.25 0.88 -5226 ZNF878 393568 3 3 3 1 1 1 0 0 1 0 0.25 0.88 -5227 TRMT112 88256 1 1 1 0 0 0 0 0 1 0 0.26 0.88 -5228 NAPA N-ethylmaleimide-sensitive factor attachment protein, alpha 208768 3 3 3 2 1 1 0 0 1 0 0.26 0.88 -5229 FAM119A family with sequence similarity 119, member A 149856 3 3 2 0 2 1 0 0 0 0 0.26 0.88 -5230 EVC Ellis van Creveld syndrome 602396 8 7 8 1 3 3 2 0 0 0 0.26 0.88 -5231 BEND6 192640 2 2 2 0 0 0 1 0 1 0 0.26 0.88 -5232 SULF2 sulfatase 2 602960 6 6 6 2 3 1 1 1 0 0 0.26 0.88 -5233 CR2 complement component (3d/Epstein Barr virus) receptor 2 751520 11 9 11 1 3 6 2 0 0 0 0.26 0.88 -5234 TMCC3 transmembrane and coiled-coil domain family 3 306432 5 5 4 2 5 0 0 0 0 0 0.26 0.88 -5235 KRT26 keratin 26 322336 3 3 3 3 1 1 0 0 1 0 0.26 0.88 -5236 TP53BP1 tumor protein p53 binding protein 1 1351112 18 9 18 3 6 6 1 0 1 4 0.26 0.88 -5237 GNLY granulysin 105056 1 1 1 0 0 1 0 0 0 0 0.26 0.88 -5238 ALDH1B1 aldehyde dehydrogenase 1 family, member B1 348992 7 5 7 1 3 2 2 0 0 0 0.26 0.88 -5239 ACOT6 acyl-CoA thioesterase 6 141568 2 2 2 0 0 2 0 0 0 0 0.26 0.88 -5240 POLR2D polymerase (RNA) II (DNA directed) polypeptide D 88312 1 1 1 0 0 0 1 0 0 0 0.26 0.88 -5241 MAB21L1 mab-21-like 1 (C. elegans) 242732 3 3 3 0 0 1 1 0 1 0 0.26 0.88 -5242 SIRT5 sirtuin (silent mating type information regulation 2 homolog) 5 (S. cerevisiae) 226688 4 4 4 1 2 1 1 0 0 0 0.26 0.88 -5243 UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) 418880 5 4 5 1 1 2 1 0 1 0 0.26 0.88 -5244 EBF2 early B-cell factor 2 393248 4 4 4 0 1 2 0 0 1 0 0.26 0.88 -5245 OR10A4 olfactory receptor, family 10, subfamily A, member 4 213248 2 2 2 0 0 1 1 0 0 0 0.26 0.88 -5246 RTBDN retbindin 156436 3 3 3 2 1 2 0 0 0 0 0.26 0.88 -5247 ACRV1 acrosomal vesicle protein 1 181580 2 2 2 1 1 1 0 0 0 0 0.26 0.88 -5248 ZSCAN18 zinc finger and SCAN domain containing 18 298040 3 3 3 1 1 0 0 0 2 0 0.26 0.88 -5249 IL11 interleukin 11 91416 1 1 1 0 0 0 0 0 1 0 0.26 0.88 -5250 TMEM8C 153664 3 3 3 0 2 1 0 0 0 0 0.26 0.88 -5251 BBX bobby sox homolog (Drosophila) 625408 7 6 7 1 2 1 2 0 2 0 0.26 0.88 -5252 TMCO3 transmembrane and coiled-coil domains 3 462168 6 5 6 2 4 1 1 0 0 0 0.26 0.88 -5253 AP2M1 adaptor-related protein complex 2, mu 1 subunit 302176 4 4 4 0 1 3 0 0 0 0 0.26 0.88 -5254 ACAD9 acyl-Coenzyme A dehydrogenase family, member 9 430752 5 4 5 2 1 2 2 0 0 0 0.26 0.88 -5255 PVRL2 poliovirus receptor-related 2 (herpesvirus entry mediator B) 383084 4 4 4 2 2 1 0 0 1 0 0.26 0.88 -5256 CPXM1 carboxypeptidase X (M14 family), member 1 467192 7 6 7 2 0 4 2 0 1 0 0.26 0.88 -5257 SLC25A36 solute carrier family 25, member 36 209816 2 2 2 0 0 1 1 0 0 0 0.26 0.88 -5258 ZNF434 zinc finger protein 434 329280 6 4 5 1 2 3 1 0 0 0 0.26 0.88 -5259 SFTPB surfactant, pulmonary-associated protein B 231596 3 3 3 3 2 1 0 0 0 0 0.26 0.88 -5260 MLNR motilin receptor 195140 3 3 3 1 1 0 1 0 1 0 0.26 0.88 -5261 FGF1 fibroblast growth factor 1 (acidic) 107520 2 2 2 0 0 1 1 0 0 0 0.26 0.88 -5262 ARHGAP19 Rho GTPase activating protein 19 343392 4 4 4 2 1 0 1 1 1 0 0.26 0.88 -5263 DUOX2 dual oxidase 2 957668 9 9 8 0 4 3 2 0 0 0 0.26 0.88 -5264 XCL2 chemokine (C motif) ligand 2 79968 1 1 1 0 1 0 0 0 0 0 0.26 0.88 -5265 ABHD13 abhydrolase domain containing 13 228032 2 2 2 1 0 0 2 0 0 0 0.26 0.88 -5266 DNASE1L3 deoxyribonuclease I-like 3 212800 2 2 2 1 0 2 0 0 0 0 0.26 0.88 -5267 CDH4 cadherin 4, type 1, R-cadherin (retinal) 597644 11 9 11 6 6 3 2 0 0 0 0.26 0.88 -5268 KIAA0319L KIAA0319-like 721420 6 6 6 1 1 1 4 0 0 0 0.26 0.88 -5269 SNX14 sorting nexin 14 662368 6 4 6 0 1 2 2 0 1 0 0.26 0.88 -5270 RGR retinal G protein coupled receptor 205184 3 3 3 0 3 0 0 0 0 0 0.26 0.88 -5271 MGA MAX gene associated 2051784 17 12 16 1 7 3 2 1 2 2 0.26 0.88 -5272 ZNF84 zinc finger protein 84 500192 6 4 6 0 0 3 1 0 2 0 0.26 0.88 -5273 ZSCAN29 zinc finger and SCAN domain containing 29 577696 8 5 8 1 2 4 1 0 1 0 0.26 0.88 -5274 FAM19A1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 77040 1 1 1 0 0 0 1 0 0 0 0.26 0.88 -5275 H2AFY H2A histone family, member Y 279104 4 3 4 0 1 2 0 0 1 0 0.26 0.88 -5276 GPR97 G protein-coupled receptor 97 367960 5 4 5 4 2 1 2 0 0 0 0.26 0.88 -5277 ZDHHC2 zinc finger, DHHC-type containing 2 221776 3 2 3 0 0 1 1 0 1 0 0.26 0.88 -5278 RASSF6 Ras association (RalGDS/AF-6) domain family member 6 249432 2 2 2 2 0 0 2 0 0 0 0.26 0.88 -5279 ALG6 asparagine-linked glycosylation 6 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) 353920 3 3 3 1 0 1 2 0 0 0 0.26 0.88 -5280 PROM2 prominin 2 565092 5 5 5 4 0 3 2 0 0 0 0.26 0.88 -5281 FBXO9 F-box protein 9 287736 4 4 4 0 2 2 0 0 0 0 0.26 0.88 -5282 KRBA2 KRAB-A domain containing 2 333088 5 4 5 2 1 2 1 0 1 0 0.26 0.88 -5283 PRDM10 PR domain containing 10 805984 10 9 10 4 6 2 0 0 2 0 0.26 0.88 -5284 LCE1F late cornified envelope 1F 80864 1 1 1 1 1 0 0 0 0 0 0.26 0.88 -5285 EIF3D eukaryotic translation initiation factor 3, subunit D 381388 4 4 4 2 2 0 1 0 1 0 0.26 0.88 -5286 YTHDC1 YTH domain containing 1 504448 8 6 7 2 3 4 1 0 0 0 0.26 0.88 -5287 TM6SF1 transmembrane 6 superfamily member 1 258272 3 3 3 0 1 1 1 0 0 0 0.26 0.88 -5288 CFL1 cofilin 1 (non-muscle) 109704 1 1 1 1 0 0 1 0 0 0 0.26 0.88 -5289 METRNL meteorin, glial cell differentiation regulator-like 90540 1 1 1 0 0 0 0 0 1 0 0.26 0.88 -5290 PGCP 324128 5 4 5 0 1 3 1 0 0 0 0.26 0.89 -5291 SPPL2A 347872 3 3 3 1 0 0 3 0 0 0 0.26 0.89 -5292 PPP2R3C protein phosphatase 2 (formerly 2A), regulatory subunit B'', gamma 316736 5 4 5 3 1 3 1 0 0 0 0.26 0.89 -5293 OR3A1 olfactory receptor, family 3, subfamily A, member 1 213024 2 2 2 0 2 0 0 0 0 0 0.26 0.89 -5294 UNC13D unc-13 homolog D (C. elegans) 657376 4 4 4 0 1 1 0 0 2 0 0.26 0.89 -5295 MBP myelin basic protein 232080 3 3 3 0 2 0 0 0 1 0 0.26 0.89 -5296 ZNF468 zinc finger protein 468 354144 3 3 3 2 1 1 0 0 1 0 0.26 0.89 -5297 CNTLN centlein, centrosomal protein 946012 9 6 9 1 1 3 4 0 1 0 0.26 0.89 -5298 ADORA3 adenosine A3 receptor 400960 3 3 3 1 1 1 0 1 0 0 0.26 0.89 -5299 TCEAL4 transcription elongation factor A (SII)-like 4 146048 2 2 2 0 0 2 0 0 0 0 0.26 0.89 -5300 TMPRSS12 transmembrane protease, serine 12 227768 3 3 3 1 0 1 2 0 0 0 0.26 0.89 -5301 SERPINA12 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 282464 6 4 6 1 2 3 1 0 0 0 0.26 0.89 -5302 IGSF8 immunoglobulin superfamily, member 8 402584 5 5 5 0 3 1 0 0 1 0 0.26 0.89 -5303 PAXIP1 PAX interacting (with transcription-activation domain) protein 1 619944 7 6 7 1 2 4 0 0 1 0 0.26 0.89 -5304 GMEB1 glucocorticoid modulatory element binding protein 1 393792 3 3 3 1 0 1 1 0 1 0 0.26 0.89 -5305 ZYG11B zyg-11 homolog B (C. elegans) 505568 4 4 4 1 1 2 1 0 0 0 0.26 0.89 -5306 CEP170 centrosomal protein 170kDa 1058468 12 8 12 1 2 6 3 0 1 0 0.26 0.89 -5307 HOXC13 homeobox C13 118664 3 3 3 1 1 1 1 0 0 0 0.26 0.89 -5308 CARD8 caspase recruitment domain family, member 8 300384 4 4 4 0 3 1 0 0 0 0 0.26 0.89 -5309 OR2T10 olfactory receptor, family 2, subfamily T, member 10 211232 2 2 2 0 0 2 0 0 0 0 0.26 0.89 -5310 B3GNT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 214676 6 5 6 1 4 1 0 1 0 0 0.26 0.89 -5311 KIAA0776 KIAA0776 551264 6 5 6 2 1 2 3 0 0 0 0.26 0.89 -5312 RASAL2 RAS protein activator like 2 869868 7 7 7 1 2 2 3 0 0 0 0.26 0.89 -5313 ANKRD44 ankyrin repeat domain 44 640640 7 6 7 3 3 4 0 0 0 0 0.26 0.89 -5314 ATP9B ATPase, class II, type 9B 778344 8 7 7 2 5 1 1 0 1 0 0.26 0.89 -5315 LMO3 LIM domain only 3 (rhombotin-like 2) 100800 1 1 1 1 1 0 0 0 0 0 0.26 0.89 -5316 RNASE9 ribonuclease, RNase A family, 9 (non-active) 141568 2 2 2 0 0 1 1 0 0 0 0.26 0.89 -5317 SLK STE20-like kinase (yeast) 841904 10 6 10 0 2 3 2 0 1 2 0.26 0.89 -5318 TMEM30A transmembrane protein 30A 249452 4 4 4 0 2 1 1 0 0 0 0.26 0.89 -5319 NMNAT3 nicotinamide nucleotide adenylyltransferase 3 147840 2 2 2 0 0 1 1 0 0 0 0.26 0.89 -5320 PAPOLG poly(A) polymerase gamma 514976 6 5 6 0 2 2 1 0 1 0 0.26 0.89 -5321 RAB27A RAB27A, member RAS oncogene family 153664 2 2 2 0 0 1 1 0 0 0 0.26 0.89 -5322 ZNF295 zinc finger protein 295 717668 6 6 6 1 2 1 2 0 1 0 0.26 0.89 -5323 WWP1 WW domain containing E3 ubiquitin protein ligase 1 640864 8 6 8 1 2 5 1 0 0 0 0.26 0.89 -5324 PSCA prostate stem cell antigen 64056 1 1 1 0 0 0 1 0 0 0 0.26 0.89 -5325 CHIC1 cysteine-rich hydrophobic domain 1 77832 1 1 1 0 0 1 0 0 0 0 0.26 0.89 -5326 FNDC3B fibronectin type III domain containing 3B 832160 9 7 9 3 3 5 1 0 0 0 0.26 0.89 -5327 SPON2 spondin 2, extracellular matrix protein 156712 2 2 2 0 0 1 0 0 1 0 0.26 0.89 -5328 KSR1 kinase suppressor of ras 1 467432 4 4 4 1 2 1 0 0 1 0 0.26 0.89 -5329 LDLRAD1 low density lipoprotein receptor class A domain containing 1 124136 2 2 2 0 1 0 1 0 0 0 0.26 0.89 -5330 CSNK1G3 casein kinase 1, gamma 3 318080 3 3 3 0 0 1 1 0 1 0 0.26 0.89 -5331 PAK2 p21 (CDKN1A)-activated kinase 2 365344 3 3 3 0 0 1 1 0 1 0 0.26 0.89 -5332 DUS4L dihydrouridine synthase 4-like (S. cerevisiae) 219072 2 2 2 0 0 2 0 0 0 0 0.26 0.89 -5333 UPK1B uroplakin 1B 181664 2 2 2 0 1 1 0 0 0 0 0.26 0.89 -5334 TTC39C 365344 4 4 4 0 3 0 0 0 1 0 0.26 0.89 -5335 SHFM1 split hand/foot malformation (ectrodactyly) type 1 50400 1 1 1 0 0 1 0 0 0 0 0.26 0.89 -5336 SSU72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) 126832 2 2 2 0 1 0 1 0 0 0 0.26 0.89 -5337 DEGS1 degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) 201152 2 2 2 0 1 0 1 0 0 0 0.26 0.89 -5338 FRYL FRY-like 2080064 19 12 19 2 7 6 3 0 3 0 0.26 0.89 -5339 WDR35 WD repeat domain 35 819392 7 7 7 1 2 4 1 0 0 0 0.26 0.89 -5340 DDX55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 413988 3 3 3 0 0 0 2 0 1 0 0.26 0.89 -5341 BANF1 barrier to autointegration factor 1 62272 1 1 1 1 0 0 0 0 1 0 0.26 0.89 -5342 AGFG2 284256 4 4 4 0 1 3 0 0 0 0 0.26 0.89 -5343 TMEM25 transmembrane protein 25 241460 2 2 2 0 0 1 0 0 1 0 0.26 0.89 -5344 TARBP1 TAR (HIV-1) RNA binding protein 1 943124 5 5 5 0 2 1 0 0 2 0 0.26 0.89 -5345 OR51L1 olfactory receptor, family 51, subfamily L, member 1 213248 2 2 2 1 0 0 1 0 1 0 0.26 0.89 -5346 SLC3A1 solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1 469952 4 4 4 1 2 1 0 0 1 0 0.26 0.89 -5347 TPM3 tropomyosin 3 287840 3 3 3 1 1 0 1 0 1 0 0.26 0.89 -5348 DEFB136 54880 1 1 1 0 0 1 0 0 0 0 0.26 0.89 -5349 FZD6 frizzled homolog 6 (Drosophila) 480480 6 5 6 1 0 6 0 0 0 0 0.26 0.89 -5350 POLR2H polymerase (RNA) II (DNA directed) polypeptide H 105952 1 1 1 0 0 1 0 0 0 0 0.26 0.89 -5351 IL28RA interleukin 28 receptor, alpha (interferon, lambda receptor) 322504 3 3 3 1 2 0 0 0 1 0 0.26 0.89 -5352 TXLNB taxilin beta 468384 4 4 4 0 3 0 0 0 1 0 0.26 0.89 -5353 CASD1 CAS1 domain containing 1 532608 6 5 6 1 3 2 1 0 0 0 0.26 0.89 -5354 ZNF268 zinc finger protein 268 267512 2 2 2 0 0 1 0 0 1 0 0.26 0.89 -5355 CST6 cystatin E/M 77896 1 1 1 0 1 0 0 0 0 0 0.26 0.89 -5356 C20orf165 chromosome 20 open reading frame 165 155008 2 2 2 0 0 1 1 0 0 0 0.26 0.89 -5357 ART5 ADP-ribosyltransferase 5 172284 2 2 2 0 1 0 1 0 0 0 0.26 0.89 -5358 IQCJ IQ motif containing J 113368 1 1 1 0 0 1 0 0 0 0 0.26 0.89 -5359 GRIPAP1 GRIP1 associated protein 1 568848 7 7 7 5 3 4 0 0 0 0 0.26 0.89 -5360 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 323904 3 3 3 0 0 1 1 0 1 0 0.26 0.89 -5361 OR1B1 olfactory receptor, family 1, subfamily B, member 1 215264 3 3 3 0 2 0 1 0 0 0 0.26 0.89 -5362 ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 228000 2 2 2 0 0 0 1 0 1 0 0.26 0.89 -5363 KIF13A kinesin family member 13A 1245880 13 8 13 4 4 4 1 0 4 0 0.26 0.89 -5364 CYP4Z1 cytochrome P450, family 4, subfamily Z, polypeptide 1 337792 3 3 3 1 0 2 0 0 1 0 0.26 0.89 -5365 FAM69B family with sequence similarity 69, member B 225436 2 2 2 0 1 0 0 0 1 0 0.26 0.89 -5366 CHMP2B chromatin modifying protein 2B 149184 2 2 2 1 0 2 0 0 0 0 0.26 0.89 -5367 H3F3B H3 histone, family 3B (H3.3B) 93324 1 1 1 0 0 0 0 0 1 0 0.26 0.89 -5368 CNTN2 contactin 2 (axonal) 719096 7 7 7 5 1 5 0 0 1 0 0.26 0.89 -5369 RAB6A RAB6A, member RAS oncogene family 172256 2 2 2 0 1 0 1 0 0 0 0.26 0.89 -5370 C3orf45 chromosome 3 open reading frame 45 114464 1 1 1 0 0 0 0 0 1 0 0.26 0.89 -5371 NPHS2 nephrosis 2, idiopathic, steroid-resistant (podocin) 231504 3 3 3 0 1 0 1 0 1 0 0.26 0.89 -5372 CNKSR3 CNKSR family member 3 385280 3 3 3 0 1 1 1 0 0 0 0.26 0.89 -5373 PCDHB14 protocadherin beta 14 497756 5 5 5 5 3 0 0 1 1 0 0.27 0.89 -5374 LILRB4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 312480 4 3 4 0 1 3 0 0 0 0 0.27 0.89 -5375 FBL fibrillarin 224448 3 3 3 1 2 0 1 0 0 0 0.27 0.89 -5376 GFOD1 glucose-fructose oxidoreductase domain containing 1 253624 3 3 3 1 0 2 0 1 0 0 0.27 0.89 -5377 GPC4 glypican 4 380016 5 4 5 0 0 2 2 0 1 0 0.27 0.89 -5378 TCHHL1 trichohyalin-like 1 609952 7 5 7 2 0 2 4 0 1 0 0.27 0.89 -5379 NAGK N-acetylglucosamine kinase 237192 2 2 2 1 1 1 0 0 0 0 0.27 0.89 -5380 DSG1 desmoglein 1 719040 8 7 8 3 2 5 1 0 0 0 0.27 0.89 -5381 CTAGE6P 210036 4 3 4 0 0 3 1 0 0 0 0.27 0.89 -5382 KITLG KIT ligand 192192 2 2 2 1 0 2 0 0 0 0 0.27 0.89 -5383 LIPJ lipase, family member J 254688 4 3 4 0 0 2 2 0 0 0 0.27 0.89 -5384 BAD BCL2-antagonist of cell death 90420 1 1 1 0 0 0 0 0 1 0 0.27 0.89 -5385 DDA1 DET1 and DDB1 associated 1 63360 1 1 1 0 0 0 1 0 0 0 0.27 0.89 -5386 EPS8L3 EPS8-like 3 410664 4 4 4 1 1 2 0 0 1 0 0.27 0.89 -5387 PPM1H protein phosphatase 1H (PP2C domain containing) 312404 4 4 4 0 1 1 1 0 1 0 0.27 0.89 -5388 MAOA monoamine oxidase A 352480 3 3 3 0 0 2 1 0 0 0 0.27 0.89 -5389 NDUFB6 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa 90272 1 1 1 0 0 0 1 0 0 0 0.27 0.89 -5390 CMTM4 CKLF-like MARVEL transmembrane domain containing 4 119920 1 1 1 2 0 0 0 0 1 0 0.27 0.89 -5391 C20orf94 chromosome 20 open reading frame 94 281120 3 3 3 0 0 2 1 0 0 0 0.27 0.89 -5392 POMC proopiomelanocortin (adrenocorticotropin/ beta-lipotropin/ alpha-melanocyte stimulating hormone/ beta-melanocyte stimulating hormone/ beta-endorphin) 126952 2 2 2 1 1 0 0 0 1 0 0.27 0.89 -5393 MITF microphthalmia-associated transcription factor 404348 5 5 5 3 1 3 0 0 1 0 0.27 0.89 -5394 GPHB5 glycoprotein hormone beta 5 63616 1 1 1 0 0 1 0 0 0 0 0.27 0.89 -5395 IL18BP interleukin 18 binding protein 137760 2 2 2 1 0 1 1 0 0 0 0.27 0.89 -5396 WWTR1 WW domain containing transcription regulator 1 254568 2 2 2 0 0 0 1 0 1 0 0.27 0.89 -5397 FAM102A family with sequence similarity 102, member A 236936 3 3 3 0 1 1 1 0 0 0 0.27 0.89 -5398 SLC25A40 solute carrier family 25, member 40 236768 3 3 2 0 2 0 0 0 1 0 0.27 0.89 -5399 RRAS2 related RAS viral (r-ras) oncogene homolog 2 119728 2 2 2 0 1 1 0 0 0 0 0.27 0.89 -5400 ADI1 acireductone dioxygenase 1 96768 1 1 1 1 0 0 1 0 0 0 0.27 0.89 -5401 C8orf4 chromosome 8 open reading frame 4 72800 1 1 1 0 0 1 0 0 0 0 0.27 0.89 -5402 LAMB4 laminin, beta 4 1211632 16 10 16 5 7 5 2 1 1 0 0.27 0.89 -5403 NEIL2 nei like 2 (E. coli) 219828 2 2 2 1 0 2 0 0 0 0 0.27 0.89 -5404 BICC1 bicaudal C homolog 1 (Drosophila) 656320 6 5 6 3 2 1 2 0 1 0 0.27 0.89 -5405 C6orf115 chromosome 6 open reading frame 115 56896 1 1 1 0 1 0 0 0 0 0 0.27 0.89 -5406 EBLN2 174832 3 2 3 0 1 1 1 0 0 0 0.27 0.89 -5407 OLAH oleoyl-ACP hydrolase 199368 1 1 1 0 0 0 0 0 1 0 0.27 0.89 -5408 TMEM65 transmembrane protein 65 112300 2 2 2 0 1 0 1 0 0 0 0.27 0.89 -5409 HOXC12 homeobox C12 116116 3 3 3 0 2 1 0 0 0 0 0.27 0.89 -5410 RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 501312 5 5 5 0 2 2 1 0 0 0 0.27 0.89 -5411 STYXL1 serine/threonine/tyrosine interacting-like 1 218176 2 2 2 0 1 0 0 0 1 0 0.27 0.89 -5412 HSF2BP heat shock transcription factor 2 binding protein 223328 2 2 2 1 2 0 0 0 0 0 0.27 0.89 -5413 ATP9A ATPase, class II, type 9A 713216 8 7 8 2 6 0 0 0 2 0 0.27 0.89 -5414 SPAST spastin 389176 5 5 5 0 1 1 2 0 1 0 0.27 0.89 -5415 NOTCH2 Notch homolog 2 (Drosophila) 1679748 13 12 13 7 1 5 4 0 3 0 0.27 0.89 -5416 TM4SF19 transmembrane 4 L six family member 19 144704 3 2 3 0 0 1 1 0 1 0 0.27 0.89 -5417 C11orf74 chromosome 11 open reading frame 74 153664 1 1 1 0 0 0 0 0 1 0 0.27 0.89 -5418 CGGBP1 CGG triplet repeat binding protein 1 113792 2 2 2 0 1 1 0 0 0 0 0.27 0.89 -5419 SYNGR4 synaptogyrin 4 161504 2 2 1 1 2 0 0 0 0 0 0.27 0.89 -5420 NCAPD3 non-SMC condensin II complex, subunit D3 1032976 6 6 6 2 2 2 0 0 2 0 0.27 0.89 -5421 EXTL3 exostoses (multiple)-like 3 622720 9 9 9 6 8 0 1 0 0 0 0.27 0.89 -5422 OR5D16 olfactory receptor, family 5, subfamily D, member 16 221060 2 2 2 2 0 1 1 0 0 0 0.27 0.89 -5423 IL1F9 interleukin 1 family, member 9 117824 1 1 1 0 1 0 0 0 0 0 0.27 0.89 -5424 APOA1BP apolipoprotein A-I binding protein 183960 2 2 2 0 0 2 0 0 0 0 0.27 0.89 -5425 ZNF143 zinc finger protein 143 442848 4 4 4 1 0 1 3 0 0 0 0.27 0.89 -5426 NEDD8 neural precursor cell expressed, developmentally down-regulated 8 58688 1 1 1 0 1 0 0 0 0 0 0.27 0.89 -5427 KDM4C 733600 7 6 7 1 3 2 1 0 1 0 0.27 0.89 -5428 TMPRSS11F transmembrane protease, serine 11F 303968 3 3 3 3 2 0 0 0 1 0 0.27 0.89 -5429 SEC14L3 SEC14-like 3 (S. cerevisiae) 280224 3 3 3 2 1 1 1 0 0 0 0.27 0.89 -5430 KCNK5 potassium channel, subfamily K, member 5 335936 5 5 4 1 4 0 0 1 0 0 0.27 0.89 -5431 BMX BMX non-receptor tyrosine kinase 470400 4 4 4 0 1 2 1 0 0 0 0.27 0.89 -5432 GYPC glycophorin C (Gerbich blood group) 85120 1 1 1 1 1 0 0 0 0 0 0.27 0.89 -5433 FBXL19 F-box and leucine-rich repeat protein 19 301772 2 2 2 0 0 0 1 0 1 0 0.27 0.89 -5434 SPINK2 serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 47488 1 1 1 0 1 0 0 0 0 0 0.27 0.89 -5435 C1orf146 chromosome 1 open reading frame 146 126112 1 1 1 0 0 0 0 0 1 0 0.27 0.89 -5436 RBM7 RNA binding motif protein 7 183904 2 2 2 0 1 1 0 0 0 0 0.27 0.89 -5437 PGAM1 phosphoglycerate mutase 1 (brain) 159712 3 3 2 0 3 0 0 0 0 0 0.27 0.89 -5438 RSRC1 arginine/serine-rich coiled-coil 1 233184 3 3 3 0 1 1 1 0 0 0 0.27 0.89 -5439 AGXT2 alanine-glyoxylate aminotransferase 2 345568 5 4 5 4 3 2 0 0 0 0 0.27 0.89 -5440 RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 356552 3 3 3 1 0 2 0 0 1 0 0.27 0.89 -5441 PHKG2 phosphorylase kinase, gamma 2 (testis) 266520 3 3 3 0 3 0 0 0 0 0 0.27 0.89 -5442 MS4A12 membrane-spanning 4-domains, subfamily A, member 12 185472 2 2 2 0 0 1 1 0 0 0 0.27 0.89 -5443 OR7G3 olfactory receptor, family 7, subfamily G, member 3 211232 1 1 1 2 0 0 0 0 1 0 0.27 0.89 -5444 SWAP70 396656 3 3 3 0 0 1 1 0 1 0 0.27 0.89 -5445 C20orf141 chromosome 20 open reading frame 141 110992 1 1 1 0 1 0 0 0 0 0 0.27 0.89 -5446 DEFB113 defensin, beta 113 56480 2 1 2 0 2 0 0 0 0 0 0.27 0.89 -5447 C3orf34 chromosome 3 open reading frame 34 114240 2 2 2 0 1 0 1 0 0 0 0.27 0.89 -5448 MYO6 myosin VI 894656 11 6 10 5 2 2 3 0 4 0 0.27 0.89 -5449 RGS6 regulator of G-protein signaling 6 332192 3 3 3 2 1 2 0 0 0 0 0.27 0.89 -5450 ZNF692 zinc finger protein 692 340564 5 4 5 1 2 3 0 0 0 0 0.27 0.89 -5451 PHKA1 phosphorylase kinase, alpha 1 (muscle) 851200 8 6 7 1 1 3 1 0 3 0 0.27 0.89 -5452 IL1R1 interleukin 1 receptor, type I 392000 4 4 4 0 2 1 1 0 0 0 0.27 0.89 -5453 CACYBP calcyclin binding protein 159264 2 2 2 0 0 1 0 0 1 0 0.27 0.89 -5454 STARD3NL STARD3 N-terminal like 164192 2 2 2 0 0 0 2 0 0 0 0.27 0.89 -5455 GDAP2 ganglioside induced differentiation associated protein 2 348544 4 4 3 0 3 0 0 0 1 0 0.27 0.89 -5456 APOOL apolipoprotein O-like 153880 1 1 1 0 0 0 0 0 1 0 0.27 0.89 -5457 TMEM174 transmembrane protein 174 165760 2 2 2 0 0 1 1 0 0 0 0.27 0.89 -5458 ANKRD45 ankyrin repeat domain 45 183904 2 2 2 2 0 2 0 0 0 0 0.27 0.89 -5459 OGT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 722752 5 5 5 0 1 1 1 0 2 0 0.27 0.89 -5460 WIF1 WNT inhibitory factor 1 242768 2 2 2 2 0 1 1 0 0 0 0.27 0.89 -5461 IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 165564 2 2 2 0 0 1 0 0 1 0 0.27 0.89 -5462 RBPMS2 RNA binding protein with multiple splicing 2 127008 2 2 2 1 1 1 0 0 0 0 0.27 0.89 -5463 HIST3H3 histone cluster 3, H3 92876 2 2 2 0 1 0 1 0 0 0 0.27 0.89 -5464 ZNF280B zinc finger protein 280B 366464 4 4 3 2 2 0 2 0 0 0 0.27 0.89 -5465 NNMT nicotinamide N-methyltransferase 180768 3 2 3 1 1 1 0 0 1 0 0.27 0.89 -5466 ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1 481944 6 6 6 2 4 1 0 0 1 0 0.27 0.89 -5467 CALCOCO1 calcium binding and coiled-coil domain 1 477568 4 4 4 0 3 1 0 0 0 0 0.27 0.89 -5468 C14orf93 chromosome 14 open reading frame 93 360108 3 3 3 2 1 1 0 0 1 0 0.27 0.89 -5469 MMP27 matrix metallopeptidase 27 354368 4 4 4 0 1 2 1 0 0 0 0.27 0.89 -5470 EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 628992 7 6 7 0 3 2 1 0 1 0 0.27 0.89 -5471 TBX4 T-box 4 331520 4 4 4 1 0 2 1 0 1 0 0.27 0.89 -5472 TTC18 tetratricopeptide repeat domain 18 765392 6 5 6 0 2 0 1 0 3 0 0.27 0.89 -5473 IGJ immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides 111104 2 2 1 0 2 0 0 0 0 0 0.27 0.89 -5474 DERL2 Der1-like domain family, member 2 167552 2 2 2 1 0 2 0 0 0 0 0.27 0.89 -5475 CYP39A1 cytochrome P450, family 39, subfamily A, polypeptide 1 326592 3 3 3 1 1 0 1 0 1 0 0.27 0.90 -5476 ELMOD1 ELMO/CED-12 domain containing 1 189400 4 3 4 1 2 2 0 0 0 0 0.27 0.90 -5477 ACSL3 acyl-CoA synthetase long-chain family member 3 497056 6 5 6 1 3 1 2 0 0 0 0.27 0.90 -5478 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 154548 3 3 3 0 2 1 0 0 0 0 0.27 0.90 -5479 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 18kDa 88032 1 1 1 0 1 0 0 0 0 0 0.27 0.90 -5480 POLR1B polymerase (RNA) I polypeptide B, 128kDa 775908 9 7 9 1 2 4 3 0 0 0 0.27 0.90 -5481 STK40 serine/threonine kinase 40 301952 5 5 5 0 3 2 0 0 0 0 0.27 0.90 -5482 RNF139 ring finger protein 139 443968 6 5 6 0 2 2 2 0 0 0 0.27 0.90 -5483 VILL villin-like 566552 5 5 5 0 1 3 1 0 0 0 0.27 0.90 -5484 NTNG1 netrin G1 383964 4 4 4 2 3 1 0 0 0 0 0.27 0.90 -5485 SUSD1 sushi domain containing 1 493920 6 4 6 2 1 1 2 0 0 2 0.27 0.90 -5486 SEC13 SEC13 homolog (S. cerevisiae) 225120 2 2 2 1 0 0 1 0 1 0 0.27 0.90 -5487 RGS16 regulator of G-protein signaling 16 134368 2 2 2 0 1 1 0 0 0 0 0.27 0.90 -5488 SEC61B Sec61 beta subunit 60608 1 1 1 0 1 0 0 0 0 0 0.27 0.90 -5489 GPR160 G protein-coupled receptor 160 228704 3 2 3 0 0 1 1 0 1 0 0.27 0.90 -5490 FAM194A 458752 5 5 5 4 0 1 3 0 1 0 0.27 0.90 -5491 NXPH3 neurexophilin 3 145776 3 2 3 0 2 1 0 0 0 0 0.27 0.90 -5492 PRAME preferentially expressed antigen in melanoma 343784 4 3 4 0 1 0 3 0 0 0 0.27 0.90 -5493 AP1S2 adaptor-related protein complex 1, sigma 2 subunit 109760 1 1 1 0 0 1 0 0 0 0 0.27 0.90 -5494 LRRC10 leucine rich repeat containing 10 187712 2 2 2 0 1 1 0 0 0 0 0.27 0.90 -5495 KIAA1683 KIAA1683 721616 6 6 6 1 0 4 1 0 1 0 0.27 0.90 -5496 ABI1 abl-interactor 1 350352 3 3 3 1 0 0 2 0 1 0 0.27 0.90 -5497 LHX3 LIM homeobox 3 157500 2 2 2 0 1 0 0 0 1 0 0.27 0.90 -5498 C4orf40 chromosome 4 open reading frame 40 151424 1 1 1 0 0 1 0 0 0 0 0.27 0.90 -5499 CDK2 cyclin-dependent kinase 2 207200 2 2 2 0 0 1 0 1 0 0 0.27 0.90 -5500 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 188904 2 2 2 0 1 1 0 0 0 0 0.27 0.90 -5501 NDN necdin homolog (mouse) 171752 3 3 3 1 0 2 0 1 0 0 0.27 0.90 -5502 SERAC1 serine active site containing 1 454496 5 4 5 1 2 1 2 0 0 0 0.27 0.90 -5503 MUL1 mitochondrial ubiquitin ligase activator of NFKB 1 227512 4 3 4 0 2 1 1 0 0 0 0.27 0.90 -5504 LAIR1 leukocyte-associated immunoglobulin-like receptor 1 202496 3 3 3 2 0 3 0 0 0 0 0.27 0.90 -5505 BCAM basal cell adhesion molecule (Lutheran blood group) 394560 4 4 4 0 3 0 0 0 1 0 0.27 0.90 -5506 IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 286048 3 3 3 1 1 1 1 0 0 0 0.27 0.90 -5507 FOXN2 forkhead box N2 294784 3 3 3 0 0 1 2 0 0 0 0.27 0.90 -5508 C11orf17 chromosome 11 open reading frame 17 138244 2 2 2 0 0 1 1 0 0 0 0.27 0.90 -5509 PIK3IP1 phosphoinositide-3-kinase interacting protein 1 107796 1 1 1 1 0 0 1 0 0 0 0.27 0.90 -5510 HRASLS5 HRAS-like suppressor family, member 5 186648 2 2 2 0 2 0 0 0 0 0 0.27 0.90 -5511 DHX29 DEAH (Asp-Glu-Ala-His) box polypeptide 29 937608 8 6 7 3 0 4 2 0 2 0 0.27 0.90 -5512 MSI2 musashi homolog 2 (Drosophila) 235956 3 3 3 0 1 1 1 0 0 0 0.27 0.90 -5513 IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1 401856 8 5 8 0 5 1 1 0 1 0 0.27 0.90 -5514 RPS27L ribosomal protein S27-like 60704 1 1 1 0 0 1 0 0 0 0 0.27 0.90 -5515 ZNF283 zinc finger protein 283 431368 10 5 8 2 2 7 0 0 1 0 0.27 0.90 -5516 SLC17A7 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 383408 5 5 5 3 4 0 1 0 0 0 0.27 0.90 -5517 SMYD3 SET and MYND domain containing 3 260736 4 3 4 1 0 2 0 0 2 0 0.28 0.90 -5518 TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 545216 7 4 7 3 3 1 1 0 0 2 0.28 0.90 -5519 MED24 mediator complex subunit 24 682920 7 6 7 3 2 4 0 0 1 0 0.28 0.90 -5520 C1orf124 chromosome 1 open reading frame 124 341600 3 3 3 0 0 1 1 0 1 0 0.28 0.90 -5521 CASQ2 calsequestrin 2 (cardiac muscle) 278656 4 3 4 0 1 2 0 0 1 0 0.28 0.90 -5522 LCE1D late cornified envelope 1D 74564 1 1 1 0 0 1 0 0 0 0 0.28 0.90 -5523 LDOC1 leucine zipper, down-regulated in cancer 1 99680 2 2 2 0 1 0 1 0 0 0 0.28 0.90 -5524 KIAA0802 KIAA0802 1000300 12 10 12 3 6 2 2 0 2 0 0.28 0.90 -5525 EIF5A2 eukaryotic translation initiation factor 5A2 107072 1 1 1 0 0 0 0 0 1 0 0.28 0.90 -5526 ANKRD13A ankyrin repeat domain 13A 393560 6 5 6 2 3 2 1 0 0 0 0.28 0.90 -5527 OR2W3 olfactory receptor, family 2, subfamily W, member 3 212576 2 2 2 0 1 0 0 0 1 0 0.28 0.90 -5528 SPATA18 spermatogenesis associated 18 homolog (rat) 373856 4 4 4 2 2 1 1 0 0 0 0.28 0.90 -5529 GLB1L3 galactosidase, beta 1-like 3 428848 5 5 5 0 1 2 2 0 0 0 0.28 0.90 -5530 LYZL6 lysozyme-like 6 103712 1 1 1 0 1 0 0 0 0 0 0.28 0.90 -5531 SMR3B submaxillary gland androgen regulated protein 3B 55552 1 1 1 1 0 1 0 0 0 0 0.28 0.90 -5532 TRIM49 tripartite motif-containing 49 215852 2 2 2 1 0 1 1 0 0 0 0.28 0.90 -5533 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase, type I, gamma 399812 4 4 4 0 2 0 1 0 1 0 0.28 0.90 -5534 SHPRH SNF2 histone linker PHD RING helicase 1166368 14 8 14 1 6 1 3 0 2 2 0.28 0.90 -5535 FAM199X 266784 2 2 2 1 0 0 1 0 1 0 0.28 0.90 -5536 DCLK3 doublecortin-like kinase 3 439712 4 4 4 4 1 2 0 0 1 0 0.28 0.90 -5537 LUZP4 leucine zipper protein 4 214592 2 2 2 0 1 1 0 0 0 0 0.28 0.90 -5538 ZNF233 zinc finger protein 233 454496 3 3 3 3 1 1 0 0 1 0 0.28 0.90 -5539 GOSR2 golgi SNAP receptor complex member 2 160376 3 3 3 0 2 1 0 0 0 0 0.28 0.90 -5540 SUCNR1 succinate receptor 1 226912 2 2 2 0 0 2 0 0 0 0 0.28 0.90 -5541 SP140 SP140 nuclear body protein 608936 7 6 7 6 2 2 2 0 1 0 0.28 0.90 -5542 NR2C2 nuclear receptor subfamily 2, group C, member 2 426496 4 4 4 1 1 1 2 0 0 0 0.28 0.90 -5543 CCBE1 collagen and calcium binding EGF domains 1 253120 3 3 3 2 1 2 0 0 0 0 0.28 0.90 -5544 FAM35A family with sequence similarity 35, member A 534968 4 4 4 0 0 2 0 0 2 0 0.28 0.90 -5545 PFDN1 prefoldin subunit 1 74272 1 1 1 2 0 0 0 0 1 0 0.28 0.90 -5546 GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 275856 4 3 3 0 0 2 0 0 2 0 0.28 0.90 -5547 ZFP42 zinc finger protein 42 homolog (mouse) 209888 3 3 3 0 1 1 1 0 0 0 0.28 0.90 -5548 NKAIN2 Na+/K+ transporting ATPase interacting 2 146720 1 1 1 0 0 0 0 0 1 0 0.28 0.90 -5549 RIPK2 receptor-interacting serine-threonine kinase 2 373240 3 3 3 0 1 1 0 0 1 0 0.28 0.90 -5550 SEC24D SEC24 related gene family, member D (S. cerevisiae) 713208 9 6 9 1 2 5 1 0 1 0 0.28 0.90 -5551 LIME1 Lck interacting transmembrane adaptor 1 103600 1 1 1 0 0 0 0 0 1 0 0.28 0.90 -5552 UBA2 ubiquitin-like modifier activating enzyme 2 421596 4 4 4 1 2 1 1 0 0 0 0.28 0.90 -5553 PHC2 polyhomeotic homolog 2 (Drosophila) 577416 7 7 7 1 2 5 0 0 0 0 0.28 0.90 -5554 IMP4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) 173320 3 3 3 0 3 0 0 0 0 0 0.28 0.90 -5555 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 738752 7 7 7 0 2 1 4 0 0 0 0.28 0.90 -5556 CNGA4 cyclic nucleotide gated channel alpha 4 392448 6 5 6 3 1 4 1 0 0 0 0.28 0.90 -5557 C20orf114 chromosome 20 open reading frame 114 339360 4 4 4 0 2 1 1 0 0 0 0.28 0.90 -5558 PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform 326144 2 2 2 0 0 0 1 0 1 0 0.28 0.90 -5559 SLC25A31 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 217728 5 4 5 5 4 1 0 0 0 0 0.28 0.90 -5560 TAS2R16 taste receptor, type 2, member 16 197120 3 2 3 0 0 2 1 0 0 0 0.28 0.90 -5561 KAT5 364900 4 4 4 2 1 0 1 0 2 0 0.28 0.90 -5562 VIPR1 vasoactive intestinal peptide receptor 1 262788 4 4 4 2 3 1 0 0 0 0 0.28 0.90 -5563 GCHFR GTP cyclohydrolase I feedback regulator 54104 1 1 1 0 1 0 0 0 0 0 0.28 0.90 -5564 CLP1 CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae) 288064 3 3 3 1 1 1 1 0 0 0 0.28 0.90 -5565 SHANK1 SH3 and multiple ankyrin repeat domains 1 889688 11 11 11 2 7 3 0 1 0 0 0.28 0.90 -5566 FMO5 flavin containing monooxygenase 5 366016 3 3 3 1 0 1 1 1 0 0 0.28 0.90 -5567 CX3CR1 chemokine (C-X3-C motif) receptor 1 262528 3 3 3 2 0 1 1 0 1 0 0.28 0.90 -5568 DDX19B DEAD (Asp-Glu-Ala-As) box polypeptide 19B 328720 3 3 3 0 1 0 1 0 1 0 0.28 0.90 -5569 MCHR2 melanin-concentrating hormone receptor 2 233632 3 3 3 2 1 1 1 0 0 0 0.28 0.90 -5570 DCAF7 236768 3 3 3 1 2 0 1 0 0 0 0.28 0.90 -5571 EIF2C3 eukaryotic translation initiation factor 2C, 3 595616 6 6 6 1 2 3 1 0 0 0 0.28 0.90 -5572 CD58 CD58 molecule 158368 2 2 2 0 0 0 2 0 0 0 0.28 0.90 -5573 PRH2 proline-rich protein HaeIII subfamily 2 114912 1 1 1 0 0 0 0 0 1 0 0.28 0.90 -5574 NDUFAF2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 117824 1 1 1 0 0 1 0 0 0 0 0.28 0.90 -5575 SCIN scinderin 321320 3 3 3 0 0 2 1 0 0 0 0.28 0.90 -5576 OR51B4 olfactory receptor, family 51, subfamily B, member 4 209888 2 2 2 1 0 2 0 0 0 0 0.28 0.90 -5577 ZBTB1 zinc finger and BTB domain containing 1 475336 3 3 3 1 1 0 1 0 1 0 0.28 0.90 -5578 C1orf227 68320 1 1 1 0 0 0 1 0 0 0 0.28 0.90 -5579 ANKRD10 ankyrin repeat domain 10 254132 3 3 3 0 1 2 0 0 0 0 0.28 0.90 -5580 BRCA2 breast cancer 2, early onset 2314648 23 11 23 4 2 8 10 0 3 0 0.28 0.90 -5581 PNLIPRP3 pancreatic lipase-related protein 3 325248 4 4 4 5 1 2 1 0 0 0 0.28 0.90 -5582 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 202084 1 1 1 0 0 0 0 0 1 0 0.28 0.90 -5583 ZNF680 zinc finger protein 680 360416 5 4 5 1 0 4 1 0 0 0 0.28 0.90 -5584 KLF3 Kruppel-like factor 3 (basic) 236992 2 2 2 0 1 0 1 0 0 0 0.28 0.90 -5585 CPEB3 cytoplasmic polyadenylation element binding protein 3 348844 4 4 4 1 1 2 0 0 1 0 0.28 0.90 -5586 WDR93 WD repeat domain 93 476000 5 5 5 1 2 1 2 0 0 0 0.28 0.90 -5587 EPT1 267304 3 3 3 0 1 1 1 0 0 0 0.28 0.90 -5588 HSPA8 heat shock 70kDa protein 8 441952 4 4 3 1 0 1 3 0 0 0 0.28 0.90 -5589 VPS13C vacuolar protein sorting 13 homolog C (S. cerevisiae) 2605120 23 14 22 2 5 10 5 1 0 2 0.28 0.90 -5590 FLRT3 fibronectin leucine rich transmembrane protein 3 437696 5 4 5 0 1 2 2 0 0 0 0.28 0.90 -5591 DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 1184288 12 8 12 3 2 4 5 0 1 0 0.28 0.90 -5592 H3F3C 92288 2 2 2 1 1 1 0 0 0 0 0.28 0.90 -5593 CCDC147 coiled-coil domain containing 147 602784 8 6 8 2 3 3 1 0 1 0 0.28 0.90 -5594 GPR143 G protein-coupled receptor 143 208640 2 2 2 2 1 1 0 0 0 0 0.28 0.90 -5595 PPOX protoporphyrinogen oxidase 331968 3 3 3 0 1 1 1 0 0 0 0.28 0.90 -5596 NKAIN3 Na+/K+ transporting ATPase interacting 3 125440 2 2 2 0 0 2 0 0 0 0 0.28 0.90 -5597 GIMAP4 GTPase, IMAP family member 4 223552 2 2 2 1 0 1 0 0 1 0 0.28 0.91 -5598 SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1 204512 2 2 2 0 0 1 0 0 1 0 0.28 0.91 -5599 RAD17 RAD17 homolog (S. pombe) 475552 4 4 4 0 1 2 0 0 1 0 0.28 0.91 -5600 RXRG retinoid X receptor, gamma 333536 4 4 4 2 0 3 0 0 1 0 0.28 0.91 -5601 C1orf66 chromosome 1 open reading frame 66 326284 3 3 3 0 1 0 1 0 1 0 0.28 0.91 -5602 BIRC3 baculoviral IAP repeat-containing 3 413728 7 4 7 0 3 2 1 0 1 0 0.28 0.91 -5603 RAB42 RAB42, member RAS oncogene family 69272 1 1 1 0 1 0 0 0 0 0 0.28 0.91 -5604 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 254464 3 3 3 2 1 1 1 0 0 0 0.28 0.91 -5605 SNX1 sorting nexin 1 350548 4 4 4 1 0 3 1 0 0 0 0.28 0.91 -5606 NGF nerve growth factor (beta polypeptide) 163520 2 2 2 0 0 1 0 1 0 0 0.28 0.91 -5607 CYP8B1 cytochrome P450, family 8, subfamily B, polypeptide 1 335804 3 3 3 1 3 0 0 0 0 0 0.28 0.91 -5608 PPYR1 pancreatic polypeptide receptor 1 253568 4 3 4 0 2 1 1 0 0 0 0.28 0.91 -5609 LMNB1 lamin B1 323008 4 3 3 0 1 1 1 0 1 0 0.28 0.91 -5610 DTX2 deltex homolog 2 (Drosophila) 386652 5 5 4 1 3 0 2 0 0 0 0.28 0.91 -5611 WFDC1 WAP four-disulfide core domain 1 109760 2 2 2 2 1 1 0 0 0 0 0.28 0.91 -5612 ZNF621 zinc finger protein 621 276144 4 3 4 2 1 1 2 0 0 0 0.28 0.91 -5613 ZNF461 zinc finger protein 461 367136 4 4 4 0 1 2 1 0 0 0 0.28 0.91 -5614 LRRCC1 leucine rich repeat and coiled-coil domain containing 1 710112 7 5 7 0 0 1 4 0 2 0 0.28 0.91 -5615 SLC5A5 solute carrier family 5 (sodium iodide symporter), member 5 400736 4 4 4 2 2 1 1 0 0 0 0.28 0.91 -5616 FKBP9 FK506 binding protein 9, 63 kDa 356412 6 5 6 0 0 3 2 0 1 0 0.28 0.91 -5617 C1orf186 chromosome 1 open reading frame 186 120736 2 2 2 0 2 0 0 0 0 0 0.28 0.91 -5618 WIPF2 WAS/WASL interacting protein family, member 2 297836 2 2 2 2 0 0 0 1 1 0 0.28 0.91 -5619 PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 548576 5 5 5 2 2 1 1 0 1 0 0.28 0.91 -5620 SEMA4G sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G 556268 6 6 6 3 3 1 2 0 0 0 0.28 0.91 -5621 MRPL32 mitochondrial ribosomal protein L32 129696 2 2 2 0 2 0 0 0 0 0 0.28 0.91 -5622 GRAMD3 GRAM domain containing 3 305760 3 3 3 1 0 1 2 0 0 0 0.28 0.91 -5623 CXorf61 chromosome X open reading frame 61 78400 1 1 1 2 0 0 1 0 0 0 0.28 0.91 -5624 DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 425712 5 5 5 4 1 2 2 0 0 0 0.28 0.91 -5625 EIF3F eukaryotic translation initiation factor 3, subunit F 225316 4 3 4 1 0 1 2 0 1 0 0.28 0.91 -5626 PPEF2 protein phosphatase, EF-hand calcium binding domain 2 521024 6 5 6 1 3 2 0 0 1 0 0.28 0.91 -5627 PPT2 palmitoyl-protein thioesterase 2 171192 2 2 2 0 1 0 0 0 1 0 0.28 0.91 -5628 SLC30A6 solute carrier family 30 (zinc transporter), member 6 322672 3 3 2 1 0 1 0 0 2 0 0.28 0.91 -5629 CDH13 cadherin 13, H-cadherin (heart) 492352 8 6 8 2 6 2 0 0 0 0 0.28 0.91 -5630 C11orf92 80108 1 1 1 0 0 0 1 0 0 0 0.28 0.91 -5631 ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5 129696 2 2 2 1 0 2 0 0 0 0 0.28 0.91 -5632 C11orf30 chromosome 11 open reading frame 30 906976 9 8 8 1 3 4 0 0 2 0 0.28 0.91 -5633 KIAA1024 KIAA1024 618912 6 5 6 7 3 2 0 1 0 0 0.28 0.91 -5634 KLK5 kallikrein-related peptidase 5 202048 3 3 3 0 1 2 0 0 0 0 0.28 0.91 -5635 FGFR1OP FGFR1 oncogene partner 256704 2 2 2 1 0 0 0 0 2 0 0.28 0.91 -5636 MKNK2 MAP kinase interacting serine/threonine kinase 2 245188 3 3 3 0 0 2 0 0 1 0 0.28 0.91 -5637 RNF212 ring finger protein 212 160524 2 2 2 0 1 1 0 0 0 0 0.28 0.91 -5638 LPAR1 lysophosphatidic acid receptor 1 247968 5 4 5 0 3 1 1 0 0 0 0.28 0.91 -5639 SV2B synaptic vesicle glycoprotein 2B 470400 6 5 6 4 2 4 0 0 0 0 0.28 0.91 -5640 PROSC proline synthetase co-transcribed homolog (bacterial) 169568 2 2 2 0 1 1 0 0 0 0 0.28 0.91 -5641 PPA2 pyrophosphatase (inorganic) 2 222460 3 3 3 1 0 3 0 0 0 0 0.28 0.91 -5642 BACE2 beta-site APP-cleaving enzyme 2 302428 3 3 3 0 0 1 1 0 1 0 0.28 0.91 -5643 SLC9A3R1 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 175224 3 3 3 1 1 1 1 0 0 0 0.28 0.91 -5644 PPP1R3F protein phosphatase 1, regulatory (inhibitor) subunit 3F 341484 6 5 6 2 2 3 1 0 0 0 0.28 0.91 -5645 KRTAP8-1 keratin associated protein 8-1 43904 1 1 1 0 0 0 1 0 0 0 0.28 0.91 -5646 HSDL1 hydroxysteroid dehydrogenase like 1 226016 2 2 2 0 1 0 0 0 1 0 0.28 0.91 -5647 CT62 93856 1 1 1 0 0 0 1 0 0 0 0.28 0.91 -5648 PSD pleckstrin and Sec7 domain containing 624608 5 5 5 0 1 1 1 0 2 0 0.28 0.91 -5649 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 425376 5 5 5 1 1 2 2 0 0 0 0.28 0.91 -5650 APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D (putative) 266336 2 2 2 2 0 0 1 0 1 0 0.28 0.91 -5651 SNX33 sorting nexin 33 388192 4 4 4 0 2 1 1 0 0 0 0.29 0.91 -5652 C7orf50 chromosome 7 open reading frame 50 122108 1 1 1 0 0 0 0 0 1 0 0.29 0.91 -5653 HIST3H2BB histone cluster 3, H2bb 86240 1 1 1 1 0 1 0 0 0 0 0.29 0.91 -5654 NECAB3 N-terminal EF-hand calcium binding protein 3 185484 3 3 3 0 1 1 1 0 0 0 0.29 0.91 -5655 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like 670856 8 7 8 1 3 2 1 0 2 0 0.29 0.91 -5656 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa 465304 5 5 5 1 2 1 2 0 0 0 0.29 0.91 -5657 PNMA2 paraneoplastic antigen MA2 246176 2 2 2 1 1 1 0 0 0 0 0.29 0.91 -5658 PCDHGA5 protocadherin gamma subfamily A, 5 630896 8 8 7 1 7 1 0 0 0 0 0.29 0.91 -5659 CNOT10 CCR4-NOT transcription complex, subunit 10 511840 4 4 4 2 0 1 1 1 1 0 0.29 0.91 -5660 IPO13 importin 13 652836 5 5 5 1 2 2 0 0 1 0 0.29 0.91 -5661 ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 82656 2 2 2 0 2 0 0 0 0 0 0.29 0.91 -5662 BOLA3 bolA homolog 3 (E. coli) 79072 1 1 1 0 0 0 0 0 1 0 0.29 0.91 -5663 USP53 ubiquitin specific peptidase 53 734664 6 6 6 1 2 1 2 0 1 0 0.29 0.91 -5664 C14orf178 chromosome 14 open reading frame 178 67048 1 1 1 0 0 1 0 0 0 0 0.29 0.91 -5665 NCOA3 nuclear receptor coactivator 3 978656 11 7 11 1 0 8 2 0 1 0 0.29 0.91 -5666 FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 754460 7 7 7 5 1 3 2 0 1 0 0.29 0.91 -5667 GCKR glucokinase (hexokinase 4) regulator 437696 5 4 5 0 4 0 0 0 1 0 0.29 0.91 -5668 NFKBIE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon 194576 2 2 2 0 1 0 0 1 0 0 0.29 0.91 -5669 HDHD3 haloacid dehalogenase-like hydrolase domain containing 3 170156 2 2 2 0 1 0 1 0 0 0 0.29 0.91 -5670 EXOSC5 exosome component 5 161384 2 2 2 0 0 2 0 0 0 0 0.29 0.91 -5671 CD2 CD2 molecule 241024 3 3 3 0 0 2 1 0 0 0 0.29 0.91 -5672 SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) 154808 2 2 2 1 0 1 0 0 1 0 0.29 0.91 -5673 TFEB transcription factor EB 319100 3 3 3 0 2 0 0 0 1 0 0.29 0.91 -5674 RAB3IL1 RAB3A interacting protein (rabin3)-like 1 207096 1 1 1 1 0 0 0 0 1 0 0.29 0.91 -5675 ABHD5 abhydrolase domain containing 5 237188 2 2 2 0 1 0 0 0 1 0 0.29 0.91 -5676 NKG7 natural killer cell group 7 sequence 115136 1 1 1 0 0 1 0 0 0 0 0.29 0.91 -5677 MAPK1 mitogen-activated protein kinase 1 222208 2 2 2 0 0 1 1 0 0 0 0.29 0.91 -5678 RSPH6A 477876 5 5 5 0 3 1 1 0 0 0 0.29 0.91 -5679 PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B (dopamine and cAMP regulated phosphoprotein, DARPP-32) 136752 1 1 1 0 0 0 0 0 1 0 0.29 0.91 -5680 C16orf78 chromosome 16 open reading frame 78 182824 4 3 4 0 2 2 0 0 0 0 0.29 0.91 -5681 RHOH ras homolog gene family, member H 129920 2 2 2 1 2 0 0 0 0 0 0.29 0.91 -5682 PLA2G15 272496 3 3 3 0 0 0 3 0 0 0 0.29 0.91 -5683 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 682304 9 7 9 5 5 2 2 0 0 0 0.29 0.91 -5684 SCD5 stearoyl-CoA desaturase 5 262640 3 3 3 1 2 1 0 0 0 0 0.29 0.91 -5685 TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2 260876 4 3 4 0 0 2 1 0 1 0 0.29 0.91 -5686 NRP2 neuropilin 2 711424 10 7 10 4 4 3 2 0 1 0 0.29 0.91 -5687 FERMT1 fermitin family homolog 1 (Drosophila) 468160 3 3 3 0 0 1 1 0 1 0 0.29 0.91 -5688 MAGEB2 melanoma antigen family B, 2 210496 2 2 2 1 1 1 0 0 0 0 0.29 0.91 -5689 C3orf23 chromosome 3 open reading frame 23 354592 4 4 4 0 1 1 2 0 0 0 0.29 0.91 -5690 MNT MAX binding protein 326540 3 3 3 2 1 0 0 1 1 0 0.29 0.91 -5691 OR11H4 olfactory receptor, family 11, subfamily H, member 4 219296 3 2 3 0 1 1 0 0 1 0 0.29 0.91 -5692 SCAMP1 secretory carrier membrane protein 1 235512 2 2 2 0 1 0 0 0 1 0 0.29 0.92 -5693 OR13A1 olfactory receptor, family 13, subfamily A, member 1 221984 3 3 3 2 1 0 2 0 0 0 0.29 0.92 -5694 PCTP phosphatidylcholine transfer protein 117376 2 2 2 0 1 1 0 0 0 0 0.29 0.92 -5695 STOML3 stomatin (EPB72)-like 3 202496 3 3 3 0 1 2 0 0 0 0 0.29 0.92 -5696 CTDSPL2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 324576 3 3 3 0 1 1 1 0 0 0 0.29 0.92 -5697 ARHGAP25 Rho GTPase activating protein 25 453516 6 4 6 5 2 2 1 0 1 0 0.29 0.92 -5698 BTK Bruton agammaglobulinemia tyrosine kinase 459648 7 5 7 3 3 2 2 0 0 0 0.29 0.92 -5699 TLR8 toll-like receptor 8 702016 6 5 6 2 1 3 2 0 0 0 0.29 0.92 -5700 CSTF1 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 294784 2 2 2 1 1 0 0 0 1 0 0.29 0.92 -5701 BRP44L brain protein 44-like 77280 1 1 1 0 1 0 0 0 0 0 0.29 0.92 -5702 MYH4 myosin, heavy chain 4, skeletal muscle 1337728 12 11 12 1 9 0 1 0 2 0 0.29 0.92 -5703 TTC32 tetratricopeptide repeat domain 32 104832 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5704 KLRAQ1 536256 5 5 5 2 3 1 1 0 0 0 0.29 0.92 -5705 TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa 312032 2 2 2 0 0 1 1 0 0 0 0.29 0.92 -5706 ZC3H14 zinc finger CCCH-type containing 14 594272 6 6 6 1 2 1 2 0 1 0 0.29 0.92 -5707 TMEM192 transmembrane protein 192 185556 1 1 1 0 0 0 0 0 1 0 0.29 0.92 -5708 CFP complement factor properdin 258080 3 3 3 0 2 0 0 0 1 0 0.29 0.92 -5709 OR2T35 olfactory receptor, family 2, subfamily T, member 35 90852 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5710 OR7A17 olfactory receptor, family 7, subfamily A, member 17 209216 2 2 2 0 0 1 1 0 0 0 0.29 0.92 -5711 TUBD1 tubulin, delta 1 312256 3 3 3 0 2 1 0 0 0 0 0.29 0.92 -5712 C1orf74 chromosome 1 open reading frame 74 182336 2 2 2 1 0 2 0 0 0 0 0.29 0.92 -5713 ETS2 v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) 323904 3 3 3 0 1 1 1 0 0 0 0.29 0.92 -5714 OR5AC2 olfactory receptor, family 5, subfamily AC, member 2 209216 2 2 2 1 2 0 0 0 0 0 0.29 0.92 -5715 PRDM14 PR domain containing 14 363832 4 4 4 0 3 1 0 0 0 0 0.29 0.92 -5716 FAM129C family with sequence similarity 129, member C 408800 5 5 5 3 4 1 0 0 0 0 0.29 0.92 -5717 PANK3 pantothenate kinase 3 252896 3 3 2 0 0 2 1 0 0 0 0.29 0.92 -5718 ZNF681 zinc finger protein 681 437696 3 3 3 2 0 1 1 0 1 0 0.29 0.92 -5719 CFHR2 complement factor H-related 2 172704 2 2 2 0 0 1 1 0 0 0 0.29 0.92 -5720 ACRC acidic repeat containing 457552 4 4 4 0 1 1 1 0 1 0 0.29 0.92 -5721 FAM109A family with sequence similarity 109, member A 59584 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5722 PNPLA7 patatin-like phospholipase domain containing 7 803424 7 7 7 3 6 0 0 0 1 0 0.29 0.92 -5723 FABP4 fatty acid binding protein 4, adipocyte 92960 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5724 CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3 172256 2 2 2 1 0 2 0 0 0 0 0.29 0.92 -5725 HSF1 heat shock transcription factor 1 112420 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5726 PCDHGA10 protocadherin gamma subfamily A, 10 639456 7 7 7 3 5 1 0 0 1 0 0.29 0.92 -5727 ANKRD29 ankyrin repeat domain 29 197652 2 2 2 0 0 2 0 0 0 0 0.29 0.92 -5728 PVRL4 poliovirus receptor-related 4 316092 4 4 4 0 1 1 2 0 0 0 0.29 0.92 -5729 DLAT dihydrolipoamide S-acetyltransferase 434560 3 3 3 0 0 0 0 0 3 0 0.29 0.92 -5730 FOXO4 forkhead box O4 334424 4 4 4 0 0 4 0 0 0 0 0.29 0.92 -5731 ERVFRDE1 252400 3 3 3 1 1 1 0 0 1 0 0.29 0.92 -5732 SUMO3 SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) 67788 1 1 1 0 1 0 0 0 0 0 0.29 0.92 -5733 RCCD1 RCC1 domain containing 1 143976 2 2 2 0 0 2 0 0 0 0 0.29 0.92 -5734 EBAG9 estrogen receptor binding site associated, antigen, 9 149184 4 2 3 0 3 1 0 0 0 0 0.29 0.92 -5735 OR4D9 olfactory receptor, family 4, subfamily D, member 9 212576 2 2 2 0 0 2 0 0 0 0 0.29 0.92 -5736 CLU clusterin 345240 4 4 4 3 3 0 1 0 0 0 0.29 0.92 -5737 CKS1B CDC28 protein kinase regulatory subunit 1B 56448 1 1 1 0 0 0 1 0 0 0 0.29 0.92 -5738 PCDHGB5 protocadherin gamma subfamily B, 5 610220 10 8 10 1 8 1 1 0 0 0 0.29 0.92 -5739 PCGF5 polycomb group ring finger 5 180768 2 2 2 0 0 0 1 0 1 0 0.29 0.92 -5740 CPT1A carnitine palmitoyltransferase 1A (liver) 545216 6 6 6 1 1 2 3 0 0 0 0.29 0.92 -5741 RHBDF2 rhomboid 5 homolog 2 (Drosophila) 543808 6 6 6 0 2 2 1 0 1 0 0.29 0.92 -5742 TRAK1 trafficking protein, kinesin binding 1 742336 11 9 10 3 5 2 3 0 1 0 0.29 0.92 -5743 ADNP2 ADNP homeobox 2 744072 7 6 7 2 2 2 2 0 1 0 0.29 0.92 -5744 CBR4 carbonyl reductase 4 164416 2 2 2 0 0 2 0 0 0 0 0.29 0.92 -5745 RAB21 RAB21, member RAS oncogene family 147416 1 1 1 0 0 0 0 0 1 0 0.29 0.92 -5746 C2orf88 65408 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5747 GLRX glutaredoxin (thioltransferase) 73696 1 1 1 0 0 0 0 0 1 0 0.29 0.92 -5748 F3 coagulation factor III (thromboplastin, tissue factor) 190792 2 2 2 1 0 1 1 0 0 0 0.29 0.92 -5749 UIMC1 ubiquitin interaction motif containing 1 496384 4 4 4 0 1 3 0 0 0 0 0.29 0.92 -5750 SYNJ2BP synaptojanin 2 binding protein 101696 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5751 TERF2IP telomeric repeat binding factor 2, interacting protein 200892 2 2 2 0 1 0 1 0 0 0 0.29 0.92 -5752 POTEE 514180 6 6 6 0 1 3 2 0 0 0 0.29 0.92 -5753 FSD1 fibronectin type III and SPRY domain containing 1 333480 4 4 4 0 2 0 1 1 0 0 0.29 0.92 -5754 OR4C12 olfactory receptor, family 4, subfamily C, member 12 209216 3 2 3 0 0 1 1 0 1 0 0.29 0.92 -5755 PTP4A3 protein tyrosine phosphatase type IVA, member 3 100584 1 1 1 0 0 0 0 1 0 0 0.29 0.92 -5756 TMEM132A transmembrane protein 132A 570136 7 7 6 0 4 1 1 0 1 0 0.29 0.92 -5757 BMP3 bone morphogenetic protein 3 (osteogenic) 316176 5 5 4 1 2 2 1 0 0 0 0.29 0.92 -5758 TTC15 tetratricopeptide repeat domain 15 431384 6 6 6 1 2 2 1 0 1 0 0.29 0.92 -5759 CLIC6 chloride intracellular channel 6 176472 2 2 2 0 0 2 0 0 0 0 0.29 0.92 -5760 OR2L2 olfactory receptor, family 2, subfamily L, member 2 211232 2 2 2 0 0 0 2 0 0 0 0.29 0.92 -5761 ICAM4 intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) 198128 3 3 3 0 1 1 0 0 1 0 0.29 0.92 -5762 GSK3A glycogen synthase kinase 3 alpha 262448 2 2 2 1 1 0 0 0 1 0 0.29 0.92 -5763 AQP12B aquaporin 12B 109088 1 1 1 0 0 0 0 0 1 0 0.29 0.92 -5764 TUBGCP3 tubulin, gamma complex associated protein 3 629300 7 6 7 0 3 2 0 0 2 0 0.29 0.92 -5765 FGL1 fibrinogen-like 1 216608 3 3 3 1 1 1 1 0 0 0 0.29 0.92 -5766 C4orf7 chromosome 4 open reading frame 7 60480 1 1 1 0 1 0 0 0 0 0 0.29 0.92 -5767 CAV1 caveolin 1, caveolae protein, 22kDa 122976 1 1 1 0 0 0 1 0 0 0 0.29 0.92 -5768 ITLN2 intelectin 2 226240 3 3 3 1 2 1 0 0 0 0 0.29 0.92 -5769 MARVELD2 MARVEL domain containing 2 381024 3 3 3 0 2 1 0 0 0 0 0.29 0.92 -5770 OR4P4 olfactory receptor, family 4, subfamily P, member 4 211232 2 2 2 2 0 0 2 0 0 0 0.29 0.92 -5771 CNKSR1 connector enhancer of kinase suppressor of Ras 1 481796 5 5 5 1 2 2 1 0 0 0 0.29 0.92 -5772 IRF4 interferon regulatory factor 4 295124 3 3 3 0 2 0 0 0 1 0 0.29 0.92 -5773 TBX3 T-box 3 (ulnar mammary syndrome) 344292 4 4 4 2 1 1 1 0 1 0 0.29 0.92 -5774 SLC19A3 solute carrier family 19, member 3 338464 2 2 2 3 0 1 1 0 0 0 0.29 0.92 -5775 FCRLB Fc receptor-like B 278628 4 4 4 1 1 2 0 0 1 0 0.29 0.92 -5776 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) 240900 3 3 3 1 0 1 2 0 0 0 0.29 0.92 -5777 ARSJ arylsulfatase family, member J 404992 5 4 5 0 2 1 1 0 1 0 0.29 0.92 -5778 SLC22A23 solute carrier family 22, member 23 276948 3 3 3 0 1 0 1 0 1 0 0.29 0.92 -5779 LY6G5C lymphocyte antigen 6 complex, locus G5C 65100 1 1 1 0 0 1 0 0 0 0 0.29 0.92 -5780 C7orf10 chromosome 7 open reading frame 10 272612 2 2 2 0 0 0 1 0 1 0 0.29 0.92 -5781 POLR1A polymerase (RNA) I polypeptide A, 194kDa 1186976 11 11 11 2 5 5 0 0 1 0 0.29 0.92 -5782 RASGRP2 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 387384 7 6 7 1 3 2 1 0 1 0 0.29 0.92 -5783 MICB MHC class I polypeptide-related sequence B 236096 3 3 3 0 1 1 1 0 0 0 0.29 0.92 -5784 HTR5A 5-hydroxytryptamine (serotonin) receptor 5A 234388 5 4 4 2 4 1 0 0 0 0 0.29 0.92 -5785 PAX6 paired box 6 303520 5 4 5 2 2 3 0 0 0 0 0.30 0.92 -5786 CREB3L2 cAMP responsive element binding protein 3-like 2 333736 4 4 4 0 1 3 0 0 0 0 0.30 0.92 -5787 TLK1 tousled-like kinase 1 536188 8 5 8 0 2 4 2 0 0 0 0.30 0.92 -5788 ARFIP2 ADP-ribosylation factor interacting protein 2 (arfaptin 2) 236096 2 2 2 1 0 0 0 1 1 0 0.30 0.92 -5789 SSR2 signal sequence receptor, beta (translocon-associated protein beta) 128128 1 1 1 0 0 0 1 0 0 0 0.30 0.92 -5790 DNAJB3 99008 2 2 2 0 1 0 1 0 0 0 0.30 0.92 -5791 DMRTC2 DMRT-like family C2 254464 2 2 2 0 0 1 1 0 0 0 0.30 0.92 -5792 PDCL phosducin-like 205632 2 2 2 0 1 1 0 0 0 0 0.30 0.92 -5793 EXOSC10 exosome component 10 617792 4 4 4 3 2 0 1 0 1 0 0.30 0.92 -5794 MITD1 MIT, microtubule interacting and transport, domain containing 1 174272 2 2 2 0 0 2 0 0 0 0 0.30 0.92 -5795 CD300A CD300a molecule 207872 3 3 3 0 0 3 0 0 0 0 0.30 0.92 -5796 GAS2L2 growth arrest-specific 2 like 2 585984 5 5 5 1 3 1 0 1 0 0 0.30 0.92 -5797 PHF21A PHD finger protein 21A 478688 6 5 6 5 3 2 1 0 0 0 0.30 0.92 -5798 C17orf57 chromosome 17 open reading frame 57 674240 7 6 7 1 2 3 1 0 1 0 0.30 0.92 -5799 PON3 paraoxonase 3 246624 2 2 2 2 0 2 0 0 0 0 0.30 0.92 -5800 ADCY4 adenylate cyclase 4 667156 9 7 9 1 1 4 3 0 1 0 0.30 0.92 -5801 FGF20 fibroblast growth factor 20 95452 2 2 2 0 1 1 0 0 0 0 0.30 0.92 -5802 ALDH18A1 aldehyde dehydrogenase 18 family, member A1 544296 5 5 5 2 3 1 0 0 1 0 0.30 0.92 -5803 SLC22A15 solute carrier family 22, member 15 379008 5 4 4 1 3 2 0 0 0 0 0.30 0.92 -5804 UAP1L1 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 190956 2 2 2 0 0 0 1 0 1 0 0.30 0.92 -5805 ZNF821 zinc finger protein 821 253792 4 4 4 1 3 1 0 0 0 0 0.30 0.92 -5806 ZNF226 zinc finger protein 226 555968 4 4 4 0 1 2 1 0 0 0 0.30 0.92 -5807 FUNDC2 FUN14 domain containing 2 119104 1 1 1 1 0 0 1 0 0 0 0.30 0.92 -5808 C12orf76 54656 1 1 1 0 0 1 0 0 0 0 0.30 0.92 -5809 CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 272244 3 3 3 0 0 0 0 0 3 0 0.30 0.92 -5810 M6PR mannose-6-phosphate receptor (cation dependent) 192192 2 2 2 0 1 1 0 0 0 0 0.30 0.92 -5811 TMC1 transmembrane channel-like 1 529312 4 4 4 0 0 3 0 0 1 0 0.30 0.92 -5812 ZNF391 zinc finger protein 391 242144 5 3 5 1 2 2 0 0 1 0 0.30 0.92 -5813 LGALS1 lectin, galactoside-binding, soluble, 1 (galectin 1) 76912 1 1 1 0 1 0 0 0 0 0 0.30 0.92 -5814 RTP4 receptor (chemosensory) transporter protein 4 167776 2 2 2 0 0 2 0 0 0 0 0.30 0.92 -5815 HDGFRP3 122752 1 1 1 0 1 0 0 0 0 0 0.30 0.92 -5816 ADAM30 ADAM metallopeptidase domain 30 532448 7 5 6 4 3 4 0 0 0 0 0.30 0.92 -5817 RPGRIP1L RPGRIP1-like 875840 9 7 9 0 5 1 1 0 2 0 0.30 0.92 -5818 GRXCR2 170016 2 2 2 0 0 1 0 0 1 0 0.30 0.92 -5819 CSRP2BP CSRP2 binding protein 535136 6 5 6 1 2 3 1 0 0 0 0.30 0.92 -5820 MAPK3 mitogen-activated protein kinase 3 263228 3 3 3 1 1 0 1 0 1 0 0.30 0.92 -5821 MOV10L1 Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 826524 13 7 13 5 5 4 1 0 3 0 0.30 0.92 -5822 IL10 interleukin 10 124768 2 2 2 4 1 1 0 0 0 0 0.30 0.92 -5823 CENPO centromere protein O 207648 2 2 2 1 0 1 0 0 1 0 0.30 0.92 -5824 PTPRR protein tyrosine phosphatase, receptor type, R 454720 6 3 6 1 1 0 2 0 1 2 0.30 0.92 -5825 CD163L1 CD163 molecule-like 1 994112 10 8 10 8 3 3 2 1 1 0 0.30 0.92 -5826 NAGLU N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB) 397888 4 4 4 1 1 1 1 0 1 0 0.30 0.92 -5827 NR1D2 nuclear receptor subfamily 1, group D, member 2 392448 6 5 6 0 3 2 1 0 0 0 0.30 0.92 -5828 FAM124B family with sequence similarity 124B 164864 2 2 2 0 2 0 0 0 0 0 0.30 0.92 -5829 OR1F1 olfactory receptor, family 1, subfamily F, member 1 209048 2 2 2 0 1 0 0 0 1 0 0.30 0.92 -5830 DARC Duffy blood group, chemokine receptor 230496 2 2 2 0 0 2 0 0 0 0 0.30 0.92 -5831 FAM162A 104696 1 1 1 0 0 1 0 0 0 0 0.30 0.92 -5832 C2orf63 chromosome 2 open reading frame 63 404320 3 3 3 0 0 2 1 0 0 0 0.30 0.92 -5833 IFNE 141344 2 2 2 0 0 2 0 0 0 0 0.30 0.92 -5834 ATF7IP activating transcription factor 7 interacting protein 865900 7 6 6 4 1 2 2 0 2 0 0.30 0.92 -5835 RLIM 422688 5 4 5 0 3 2 0 0 0 0 0.30 0.92 -5836 ZCCHC8 zinc finger, CCHC domain containing 8 480704 6 5 6 3 1 2 2 0 1 0 0.30 0.92 -5837 C6orf138 chromosome 6 open reading frame 138 559664 8 5 8 1 2 2 3 0 1 0 0.30 0.92 -5838 ZNF605 zinc finger protein 605 434112 4 3 4 0 0 1 3 0 0 0 0.30 0.92 -5839 MAGEA5 melanoma antigen family A, 5 84812 1 1 1 0 1 0 0 0 0 0 0.30 0.92 -5840 RAB30 RAB30, member RAS oncogene family 140672 2 2 2 0 0 2 0 0 0 0 0.30 0.92 -5841 TMEM37 transmembrane protein 37 124544 2 2 2 0 1 0 0 1 0 0 0.30 0.92 -5842 PCDHB11 protocadherin beta 11 503412 7 6 7 4 3 2 1 0 1 0 0.30 0.92 -5843 SOX6 SRY (sex determining region Y)-box 6 564480 7 6 6 0 4 3 0 0 0 0 0.30 0.92 -5844 PAFAH1B3 platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa 155760 2 2 2 0 2 0 0 0 0 0 0.30 0.92 -5845 POLD3 polymerase (DNA-directed), delta 3, accessory subunit 324576 2 2 2 2 0 1 0 0 1 0 0.30 0.92 -5846 GSS glutathione synthetase 329952 4 4 4 0 1 1 2 0 0 0 0.30 0.92 -5847 RPP40 ribonuclease P/MRP 40kDa subunit 251776 3 3 3 1 1 1 0 0 1 0 0.30 0.92 -5848 FCN2 ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin) 218176 3 3 3 0 1 1 0 0 1 0 0.30 0.92 -5849 MYBL2 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 475928 5 5 5 2 2 3 0 0 0 0 0.30 0.92 -5850 SYT7 synaptotagmin VII 256720 3 3 2 0 3 0 0 0 0 0 0.30 0.92 -5851 PPIL6 peptidylprolyl isomerase (cyclophilin)-like 6 190096 2 2 2 1 0 1 0 0 1 0 0.30 0.92 -5852 PRKAB1 protein kinase, AMP-activated, beta 1 non-catalytic subunit 188216 2 2 2 1 1 0 0 0 1 0 0.30 0.92 -5853 VPREB3 pre-B lymphocyte gene 3 85120 1 1 1 0 1 0 0 0 0 0 0.30 0.92 -5854 EFHC2 EF-hand domain (C-terminal) containing 2 419928 5 5 5 0 2 1 2 0 0 0 0.30 0.92 -5855 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 392672 3 3 3 0 0 1 1 0 1 0 0.30 0.92 -5856 ABCC5 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 1001280 7 7 7 2 1 1 1 0 4 0 0.30 0.92 -5857 TAT tyrosine aminotransferase 305824 5 4 5 1 1 4 0 0 0 0 0.30 0.92 -5858 GPRIN3 GPRIN family member 3 523040 4 4 4 2 1 1 1 0 1 0 0.30 0.92 -5859 NDUFB3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 68320 1 1 1 0 0 1 0 0 0 0 0.30 0.92 -5860 PLCZ1 phospholipase C, zeta 1 421792 4 3 4 0 1 1 1 0 1 0 0.30 0.92 -5861 SIKE1 146944 2 2 2 0 0 2 0 0 0 0 0.30 0.92 -5862 TRIM68 tripartite motif-containing 68 331968 3 3 3 2 1 2 0 0 0 0 0.30 0.92 -5863 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 330036 4 4 3 1 2 1 1 0 0 0 0.30 0.92 -5864 ZNF700 zinc finger protein 700 502880 8 5 8 1 1 4 3 0 0 0 0.30 0.92 -5865 PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 515456 5 5 5 1 3 0 1 0 1 0 0.30 0.92 -5866 SENP1 SUMO1/sentrin specific peptidase 1 445688 5 4 5 0 1 1 2 0 1 0 0.30 0.92 -5867 ADIPOR2 adiponectin receptor 2 266336 3 3 3 0 1 0 2 0 0 0 0.30 0.92 -5868 FAM73A family with sequence similarity 73, member A 439292 3 3 3 2 0 1 1 0 1 0 0.30 0.92 -5869 ZIC3 Zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) 200832 3 3 3 0 2 1 0 0 0 0 0.30 0.92 -5870 C17orf47 chromosome 17 open reading frame 47 385504 3 3 2 1 0 1 0 0 2 0 0.30 0.92 -5871 SLC17A8 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 407232 4 3 4 2 0 4 0 0 0 0 0.30 0.92 -5872 USP46 ubiquitin specific peptidase 46 248976 3 3 3 0 1 1 1 0 0 0 0.30 0.92 -5873 BECN1 beclin 1, autophagy related 312928 3 3 3 1 1 0 1 0 1 0 0.30 0.92 -5874 SLC4A8 solute carrier family 4, sodium bicarbonate cotransporter, member 8 758016 7 5 7 0 2 4 0 0 1 0 0.30 0.92 -5875 TMEM156 transmembrane protein 156 204960 2 2 2 0 0 1 1 0 0 0 0.30 0.92 -5876 IL27RA interleukin 27 receptor, alpha 435904 5 4 5 3 3 1 0 0 1 0 0.30 0.92 -5877 MT3 metallothionein 3 49056 1 1 1 0 1 0 0 0 0 0 0.30 0.92 -5878 FAM154B family with sequence similarity 154, member B 270816 4 4 4 1 2 2 0 0 0 0 0.30 0.92 -5879 TRAM1 translocation associated membrane protein 1 261856 2 2 2 2 1 0 0 0 1 0 0.30 0.92 -5880 MSH4 mutS homolog 4 (E. coli) 647584 7 5 6 2 0 4 3 0 0 0 0.30 0.92 -5881 MAVS 348852 2 2 2 1 0 0 0 0 2 0 0.30 0.92 -5882 SP8 Sp8 transcription factor 151296 2 2 2 0 0 1 0 1 0 0 0.30 0.92 -5883 IL7R interleukin 7 receptor 316288 3 3 3 1 0 3 0 0 0 0 0.30 0.92 -5884 FAM188A 305536 3 3 3 0 0 3 0 0 0 0 0.30 0.92 -5885 BCL6 B-cell CLL/lymphoma 6 (zinc finger protein 51) 482272 5 5 5 4 2 2 0 0 1 0 0.30 0.92 -5886 DCUN1D3 DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) 206752 2 2 2 0 1 0 1 0 0 0 0.30 0.92 -5887 KRTAP19-3 keratin associated protein 19-3 56000 1 1 1 0 0 1 0 0 0 0 0.30 0.92 -5888 MS4A15 membrane-spanning 4-domains, subfamily A, member 15 143832 3 2 3 0 1 1 0 0 1 0 0.30 0.92 -5889 ZNF214 zinc finger protein 214 409696 3 3 3 3 1 1 1 0 0 0 0.30 0.92 -5890 OLFML2B olfactomedin-like 2B 511840 8 7 8 3 4 1 3 0 0 0 0.30 0.92 -5891 PCP2 Purkinje cell protein 2 90752 1 1 1 0 0 0 0 0 1 0 0.30 0.92 -5892 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 248200 3 3 3 1 0 1 2 0 0 0 0.30 0.92 -5893 CIB4 calcium and integrin binding family member 4 127456 1 1 1 0 0 1 0 0 0 0 0.30 0.92 -5894 MARCH5 membrane-associated ring finger (C3HC4) 5 187032 1 1 1 0 0 0 0 0 1 0 0.30 0.92 -5895 SLC26A9 solute carrier family 26, member 9 616448 5 5 5 1 4 0 1 0 0 0 0.30 0.92 -5896 UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 128940 2 2 2 1 1 1 0 0 0 0 0.30 0.92 -5897 GRK5 G protein-coupled receptor kinase 5 398684 4 4 4 1 4 0 0 0 0 0 0.30 0.92 -5898 C16orf58 chromosome 16 open reading frame 58 273516 3 3 3 0 1 1 1 0 0 0 0.30 0.92 -5899 RFC5 replication factor C (activator 1) 5, 36.5kDa 239008 3 2 2 0 0 0 1 0 2 0 0.30 0.92 -5900 C1orf131 chromosome 1 open reading frame 131 203840 2 2 2 0 1 1 0 0 0 0 0.30 0.92 -5901 SLC4A4 solute carrier family 4, sodium bicarbonate cotransporter, member 4 797824 8 7 8 4 3 2 3 0 0 0 0.30 0.92 -5902 ROR2 receptor tyrosine kinase-like orphan receptor 2 608356 8 7 7 3 3 3 1 0 1 0 0.30 0.92 -5903 TCP1 t-complex 1 385056 3 3 3 0 0 1 1 0 1 0 0.30 0.92 -5904 NDUFB2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 73920 1 1 1 0 0 0 1 0 0 0 0.30 0.92 -5905 C20orf195 chromosome 20 open reading frame 195 210308 2 2 2 1 0 1 1 0 0 0 0.30 0.92 -5906 DPP4 dipeptidyl-peptidase 4 (CD26, adenosine deaminase complexing protein 2) 538720 4 4 4 2 0 3 1 0 0 0 0.30 0.92 -5907 RAP1A RAP1A, member of RAS oncogene family 129696 2 2 2 0 1 1 0 0 0 0 0.30 0.92 -5908 DOK6 docking protein 6 230272 3 3 3 3 2 0 1 0 0 0 0.30 0.92 -5909 ARL1 ADP-ribosylation factor-like 1 122784 2 2 2 1 0 2 0 0 0 0 0.30 0.92 -5910 GRK6 G protein-coupled receptor kinase 6 393776 3 3 3 0 0 2 0 0 1 0 0.30 0.92 -5911 EIF3I eukaryotic translation initiation factor 3, subunit I 228928 2 2 2 0 0 1 1 0 0 0 0.30 0.92 -5912 OR2A4 olfactory receptor, family 2, subfamily A, member 4 154280 1 1 1 0 0 0 0 0 1 0 0.30 0.92 -5913 THEM5 thioesterase superfamily member 5 172032 1 1 1 1 0 0 0 0 1 0 0.30 0.92 -5914 SLC16A4 solute carrier family 16, member 4 (monocarboxylic acid transporter 5) 335104 2 2 2 0 0 0 1 0 1 0 0.30 0.92 -5915 FAM151B family with sequence similarity 151, member B 185024 2 2 2 0 1 0 1 0 0 0 0.30 0.92 -5916 DEFB114 defensin, beta 114 48832 1 1 1 0 1 0 0 0 0 0 0.30 0.92 -5917 RHOXF1 Rhox homeobox family, member 1 106848 1 1 1 0 0 0 0 1 0 0 0.30 0.92 -5918 UBE2I ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) 112140 2 2 2 0 1 1 0 0 0 0 0.30 0.92 -5919 CATSPER1 cation channel, sperm associated 1 530124 6 6 6 1 2 2 2 0 0 0 0.30 0.92 -5920 CLDND1 claudin domain containing 1 189728 2 2 2 0 1 0 0 0 1 0 0.30 0.92 -5921 HAUS6 657664 5 5 5 1 2 1 1 0 1 0 0.30 0.92 -5922 STARD6 StAR-related lipid transfer (START) domain containing 6 153888 2 2 2 0 0 2 0 0 0 0 0.30 0.93 -5923 VIM vimentin 276624 3 3 3 0 1 1 1 0 0 0 0.30 0.93 -5924 RAPGEF4 Rap guanine nucleotide exchange factor (GEF) 4 695968 7 5 7 5 2 0 3 0 2 0 0.30 0.93 -5925 REM1 RAS (RAD and GEM)-like GTP-binding 1 167328 2 2 2 1 1 0 0 0 1 0 0.30 0.93 -5926 SYTL1 synaptotagmin-like 1 257828 3 3 3 0 3 0 0 0 0 0 0.30 0.93 -5927 C22orf25 chromosome 22 open reading frame 25 183992 2 2 2 0 1 0 1 0 0 0 0.30 0.93 -5928 BLCAP bladder cancer associated protein 58264 1 1 1 0 1 0 0 0 0 0 0.30 0.93 -5929 UBTD2 ubiquitin domain containing 2 144032 2 2 2 1 2 0 0 0 0 0 0.30 0.93 -5930 PNPLA1 patatin-like phospholipase domain containing 1 305088 3 3 3 1 1 2 0 0 0 0 0.30 0.93 -5931 C19orf53 chromosome 19 open reading frame 53 68544 1 1 1 0 0 1 0 0 0 0 0.30 0.93 -5932 ZNF215 zinc finger protein 215 352576 3 3 3 2 1 2 0 0 0 0 0.30 0.93 -5933 POLE polymerase (DNA directed), epsilon 1560860 21 15 19 3 5 12 2 0 2 0 0.31 0.93 -5934 PRG4 proteoglycan 4 954912 7 6 7 3 2 3 1 0 1 0 0.31 0.93 -5935 ABI3BP ABI gene family, member 3 (NESH) binding protein 730632 11 7 11 2 5 6 0 0 0 0 0.31 0.93 -5936 SIGLEC11 sialic acid binding Ig-like lectin 11 417344 7 5 6 1 1 5 1 0 0 0 0.31 0.93 -5937 NLE1 notchless homolog 1 (Drosophila) 321508 4 4 4 0 3 0 0 0 1 0 0.31 0.93 -5938 WDR86 WD repeat domain 86 129144 2 2 2 0 0 1 0 0 1 0 0.31 0.93 -5939 SF3B3 splicing factor 3b, subunit 3, 130kDa 840896 7 7 7 2 3 3 1 0 0 0 0.31 0.93 -5940 C10orf25 chromosome 10 open reading frame 25 79564 1 1 1 0 0 1 0 0 0 0 0.31 0.93 -5941 TREX1 three prime repair exonuclease 1 249452 2 2 2 0 0 1 0 0 1 0 0.31 0.93 -5942 MCM9 minichromosome maintenance complex component 9 268800 3 3 3 0 1 0 2 0 0 0 0.31 0.93 -5943 KIAA1468 KIAA1468 818524 5 5 5 1 2 0 0 0 3 0 0.31 0.93 -5944 TM2D2 TM2 domain containing 2 169848 2 2 2 0 1 1 0 0 0 0 0.31 0.93 -5945 KIAA0020 KIAA0020 451360 4 4 4 3 1 2 0 0 1 0 0.31 0.93 -5946 FDFT1 farnesyl-diphosphate farnesyltransferase 1 288064 3 3 3 0 1 1 1 0 0 0 0.31 0.93 -5947 COL25A1 collagen, type XXV, alpha 1 491232 5 5 5 3 4 0 0 0 1 0 0.31 0.93 -5948 MPHOSPH9 M-phase phosphoprotein 9 711424 5 5 5 0 2 0 1 0 2 0 0.31 0.93 -5949 HDAC2 histone deacetylase 2 328608 2 2 2 0 0 0 0 0 2 0 0.31 0.93 -5950 KCNN2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 360248 3 3 3 4 1 0 1 0 1 0 0.31 0.93 -5951 ZNF626 zinc finger protein 626 365372 4 4 4 1 0 3 1 0 0 0 0.31 0.93 -5952 MPP2 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) 382368 5 5 5 2 3 0 1 1 0 0 0.31 0.93 -5953 RAB41 RAB41, member RAS oncogene family 156352 2 2 2 0 0 2 0 0 0 0 0.31 0.93 -5954 C20orf12 chromosome 20 open reading frame 12 496600 4 4 4 0 0 2 1 0 1 0 0.31 0.93 -5955 SLC22A6 solute carrier family 22 (organic anion transporter), member 6 384296 4 4 4 2 3 1 0 0 0 0 0.31 0.93 -5956 KIAA1967 KIAA1967 605536 6 6 6 0 2 3 1 0 0 0 0.31 0.93 -5957 OTOA otoancorin 619416 7 6 7 2 4 1 1 0 1 0 0.31 0.93 -5958 KBTBD2 kelch repeat and BTB (POZ) domain containing 2 422016 3 3 3 0 1 0 2 0 0 0 0.31 0.93 -5959 IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 395724 6 4 6 1 1 4 0 0 1 0 0.31 0.93 -5960 CCDC138 coiled-coil domain containing 138 447800 3 3 3 0 1 1 1 0 0 0 0.31 0.93 -5961 CLCN3 chloride channel 3 594272 8 6 8 0 2 5 1 0 0 0 0.31 0.93 -5962 CLEC4E C-type lectin domain family 4, member E 153216 2 2 2 0 0 2 0 0 0 0 0.31 0.93 -5963 ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 576800 6 5 6 2 1 2 3 0 0 0 0.31 0.93 -5964 PRPS2 phosphoribosyl pyrophosphate synthetase 2 208432 2 2 2 1 0 2 0 0 0 0 0.31 0.93 -5965 UBR5 ubiquitin protein ligase E3 component n-recognin 5 1925488 12 10 12 3 2 6 2 0 2 0 0.31 0.93 -5966 OR5K4 olfactory receptor, family 5, subfamily K, member 4 217280 2 2 2 2 0 1 0 0 1 0 0.31 0.93 -5967 FBXO30 F-box protein 30 503104 4 4 4 0 1 2 1 0 0 0 0.31 0.93 -5968 C3orf79 70560 2 1 2 0 0 2 0 0 0 0 0.31 0.93 -5969 TCHH trichohyalin 1272096 13 12 13 3 5 4 4 0 0 0 0.31 0.93 -5970 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 268352 2 2 2 2 0 1 1 0 0 0 0.31 0.93 -5971 GGNBP2 gametogenetin binding protein 2 474992 7 4 7 0 2 2 1 0 2 0 0.31 0.93 -5972 SPINK14 69440 1 1 1 0 0 1 0 0 0 0 0.31 0.93 -5973 FANCB Fanconi anemia, complementation group B 585088 4 4 4 1 0 3 0 0 1 0 0.31 0.93 -5974 IFIT1B 320656 3 3 3 0 1 2 0 0 0 0 0.31 0.93 -5975 SDK2 sidekick homolog 2 (chicken) 1161848 12 11 12 4 6 3 3 0 0 0 0.31 0.93 -5976 SUZ12 suppressor of zeste 12 homolog (Drosophila) 444664 4 3 4 0 2 0 0 0 0 2 0.31 0.93 -5977 ULBP2 UL16 binding protein 2 166720 2 2 2 0 0 2 0 0 0 0 0.31 0.93 -5978 SUB1 SUB1 homolog (S. cerevisiae) 89600 1 1 1 0 0 0 1 0 0 0 0.31 0.93 -5979 S1PR3 255584 3 3 3 3 2 1 0 0 0 0 0.31 0.93 -5980 TRIM59 tripartite motif-containing 59 272384 2 2 2 0 0 2 0 0 0 0 0.31 0.93 -5981 CCAR1 cell division cycle and apoptosis regulator 1 794976 7 6 7 1 3 1 2 0 1 0 0.31 0.93 -5982 SCTR secretin receptor 290976 3 3 3 0 1 0 1 0 1 0 0.31 0.93 -5983 SNAP23 synaptosomal-associated protein, 23kDa 148736 1 1 1 0 1 0 0 0 0 0 0.31 0.93 -5984 ALDH3B1 aldehyde dehydrogenase 3 family, member B1 227328 3 3 3 0 2 1 0 0 0 0 0.31 0.93 -5985 PLOD1 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 483484 4 4 4 1 1 1 0 1 1 0 0.31 0.93 -5986 ZNF134 zinc finger protein 134 289408 3 3 3 0 0 2 1 0 0 0 0.31 0.93 -5987 TROAP trophinin associated protein (tastin) 558880 4 4 4 0 1 1 1 0 1 0 0.31 0.93 -5988 MYH14 myosin, heavy chain 14 1146424 12 11 12 1 7 2 1 0 2 0 0.31 0.93 -5989 MSH5 mutS homolog 5 (E. coli) 481044 5 5 5 1 3 0 2 0 0 0 0.31 0.93 -5990 ASF1B ASF1 anti-silencing function 1 homolog B (S. cerevisiae) 140000 2 2 2 0 0 1 1 0 0 0 0.31 0.93 -5991 SKP1 S-phase kinase-associated protein 1 120736 1 1 1 0 0 1 0 0 0 0 0.31 0.93 -5992 TPD52L1 tumor protein D52-like 1 144032 2 2 2 0 0 2 0 0 0 0 0.31 0.93 -5993 CD44 CD44 molecule (Indian blood group) 505768 3 3 3 1 1 1 1 0 0 0 0.31 0.93 -5994 FRRS1 ferric-chelate reductase 1 434784 5 4 5 1 1 4 0 0 0 0 0.31 0.93 -5995 FAM89B family with sequence similarity 89, member B 53284 1 1 1 0 1 0 0 0 0 0 0.31 0.93 -5996 PLEKHG1 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 938616 7 6 7 3 5 0 1 0 1 0 0.31 0.93 -5997 C1orf198 chromosome 1 open reading frame 198 195444 2 2 2 1 0 0 1 0 1 0 0.31 0.93 -5998 LRRC41 leucine rich repeat containing 41 523404 6 5 6 1 4 2 0 0 0 0 0.31 0.93 -5999 FXYD4 FXYD domain containing ion transport regulator 4 66752 1 1 1 0 0 0 1 0 0 0 0.31 0.93 -6000 FAT3 FAT tumor suppressor homolog 3 (Drosophila) 3037868 36 16 36 16 7 16 7 0 4 2 0.31 0.93 -6001 IL5RA interleukin 5 receptor, alpha 297696 6 4 5 1 1 5 0 0 0 0 0.31 0.93 -6002 DSCR4 Down syndrome critical region gene 4 82656 1 1 1 0 0 0 0 0 1 0 0.31 0.93 -6003 ACAN aggrecan 1421788 13 11 13 1 3 7 1 0 2 0 0.31 0.93 -6004 FCHSD1 FCH and double SH3 domains 1 459340 8 7 8 0 7 1 0 0 0 0 0.31 0.93 -6005 C20orf54 chromosome 20 open reading frame 54 289584 4 4 4 2 3 1 0 0 0 0 0.31 0.93 -6006 MOCOS molybdenum cofactor sulfurase 577640 5 5 5 4 2 2 1 0 0 0 0.31 0.93 -6007 C2orf77 369480 4 3 4 1 0 2 1 0 1 0 0.31 0.93 -6008 FTHL17 ferritin, heavy polypeptide-like 17 124544 2 2 2 0 1 1 0 0 0 0 0.31 0.93 -6009 CHRNE cholinergic receptor, nicotinic, epsilon 299236 5 5 5 0 2 1 0 0 2 0 0.31 0.93 -6010 MAGEE2 melanoma antigen family E, 2 353024 2 2 2 2 0 1 0 0 1 0 0.31 0.93 -6011 IQCG IQ motif containing G 307328 3 3 3 0 1 0 2 0 0 0 0.31 0.93 -6012 LIPH lipase, member H 312704 3 3 3 1 1 0 1 0 1 0 0.31 0.93 -6013 RAB7A RAB7A, member RAS oncogene family 144256 2 2 2 0 0 1 1 0 0 0 0.31 0.93 -6014 OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 213920 2 2 2 0 0 0 2 0 0 0 0.31 0.93 -6015 IMP3 IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) 93884 1 1 1 0 0 0 1 0 0 0 0.31 0.93 -6016 PLAC4 placenta-specific 4 65784 1 1 1 0 1 0 0 0 0 0 0.31 0.93 -6017 C1orf58 chromosome 1 open reading frame 58 287616 2 2 2 0 0 1 0 0 1 0 0.31 0.93 -6018 C7orf66 79744 1 1 1 1 0 1 0 0 0 0 0.31 0.93 -6019 SPACA4 sperm acrosome associated 4 72716 1 1 1 0 1 0 0 0 0 0 0.31 0.93 -6020 IGSF9 immunoglobulin superfamily, member 9 757952 8 8 8 4 6 1 0 0 1 0 0.31 0.93 -6021 SCP2 sterol carrier protein 2 387968 3 3 3 0 0 3 0 0 0 0 0.31 0.93 -6022 RSF1 remodeling and spacing factor 1 936964 9 6 9 0 3 0 1 0 1 4 0.31 0.93 -6023 PCDHA1 protocadherin alpha 1 648620 9 9 8 4 5 1 3 0 0 0 0.31 0.93 -6024 RGAG4 retrotransposon gag domain containing 4 353932 4 4 4 1 2 0 0 1 1 0 0.31 0.93 -6025 COX6C cytochrome c oxidase subunit VIc 52864 1 1 1 0 0 1 0 0 0 0 0.31 0.93 -6026 PPM1K protein phosphatase 1K (PP2C domain containing) 256032 2 2 2 2 1 1 0 0 0 0 0.31 0.93 -6027 RBM4B RNA binding motif protein 4B 243712 3 3 3 1 2 0 0 0 1 0 0.31 0.93 -6028 SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 428288 5 4 5 0 1 2 1 0 1 0 0.31 0.93 -6029 FOXM1 forkhead box M1 536844 5 4 4 2 1 1 0 0 1 2 0.31 0.93 -6030 DYM dymeclin 464576 3 3 3 0 0 0 1 0 2 0 0.31 0.93 -6031 ZP2 zona pellucida glycoprotein 2 (sperm receptor) 518336 7 5 7 5 1 5 1 0 0 0 0.31 0.93 -6032 LHPP 155540 2 2 2 0 2 0 0 0 0 0 0.31 0.93 -6033 LYAR Ly1 antibody reactive homolog (mouse) 262528 3 3 3 3 1 2 0 0 0 0 0.31 0.93 -6034 IRAK1BP1 interleukin-1 receptor-associated kinase 1 binding protein 1 177548 2 2 2 1 1 1 0 0 0 0 0.31 0.93 -6035 APOA2 apolipoprotein A-II 70560 1 1 1 0 0 1 0 0 0 0 0.31 0.93 -6036 CCDC42 coiled-coil domain containing 42 219296 4 3 4 0 3 0 1 0 0 0 0.31 0.93 -6037 HIST1H2AM histone cluster 1, H2am 88928 1 1 1 0 0 0 1 0 0 0 0.31 0.93 -6038 FABP3 fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) 93632 1 1 1 0 1 0 0 0 0 0 0.31 0.93 -6039 MTHFS 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) 112672 1 1 1 0 1 0 0 0 0 0 0.31 0.93 -6040 HAPLN3 hyaluronan and proteoglycan link protein 3 235928 4 3 4 1 2 1 0 0 1 0 0.31 0.93 -6041 PKD1L1 polycystic kidney disease 1 like 1 1965456 19 13 19 8 6 5 7 0 1 0 0.31 0.93 -6042 ZNF768 zinc finger protein 768 354256 4 4 4 0 1 3 0 0 0 0 0.31 0.93 -6043 RRH retinal pigment epithelium-derived rhodopsin homolog 233408 4 3 4 0 0 3 1 0 0 0 0.31 0.93 -6044 KRT222 204288 3 3 3 0 0 3 0 0 0 0 0.31 0.93 -6045 EP300 E1A binding protein p300 1645952 15 12 15 3 5 5 4 1 0 0 0.31 0.93 -6046 C17orf102 94696 1 1 1 2 0 0 1 0 0 0 0.31 0.93 -6047 IGF1 insulin-like growth factor 1 (somatomedin C) 153888 2 2 2 1 1 0 1 0 0 0 0.31 0.93 -6048 KIAA1644 137732 2 2 2 0 1 1 0 0 0 0 0.31 0.93 -6049 HLA-DMB major histocompatibility complex, class II, DM beta 138516 2 2 2 1 1 1 0 0 0 0 0.31 0.93 -6050 C12orf12 chromosome 12 open reading frame 12 244104 4 4 4 3 3 1 0 0 0 0 0.31 0.93 -6051 MYT1L myelin transcription factor 1-like 700452 15 9 15 1 9 4 2 0 0 0 0.31 0.93 -6052 AP3S1 adaptor-related protein complex 3, sigma 1 subunit 134248 2 2 2 1 0 2 0 0 0 0 0.31 0.93 -6053 SELP selectin P (granule membrane protein 140kDa, antigen CD62) 572768 6 5 6 3 2 2 0 0 2 0 0.31 0.93 -6054 CA14 carbonic anhydrase XIV 236992 2 2 2 0 1 0 0 0 1 0 0.31 0.93 -6055 GPR22 G protein-coupled receptor 22 292292 3 2 3 1 0 1 1 0 1 0 0.31 0.93 -6056 CENPL centromere protein L 235424 2 2 2 0 0 2 0 0 0 0 0.31 0.93 -6057 C1orf162 chromosome 1 open reading frame 162 109312 1 1 1 0 0 1 0 0 0 0 0.31 0.93 -6058 C10orf93 chromosome 10 open reading frame 93 231728 2 2 2 0 0 0 1 0 1 0 0.31 0.93 -6059 SLC35A4 solute carrier family 35, member A4 216440 2 2 2 1 1 0 1 0 0 0 0.31 0.93 -6060 GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa 359472 5 5 5 1 3 0 1 0 1 0 0.31 0.93 -6061 IMMT inner membrane protein, mitochondrial (mitofilin) 513352 7 5 6 2 2 3 0 0 2 0 0.31 0.93 -6062 RANBP2 RAN binding protein 2 2153572 17 11 16 3 4 4 6 0 3 0 0.31 0.93 -6063 DDO D-aspartate oxidase 253120 2 2 2 1 0 1 0 0 1 0 0.31 0.93 -6064 HSPB2 heat shock 27kDa protein 2 113884 2 2 2 0 1 1 0 0 0 0 0.31 0.93 -6065 SESN2 sestrin 2 311136 4 4 4 1 3 0 1 0 0 0 0.31 0.93 -6066 ENO2 enolase 2 (gamma, neuronal) 302176 3 3 3 0 0 2 1 0 0 0 0.31 0.93 -6067 SCN4A sodium channel, voltage-gated, type IV, alpha subunit 1224332 15 11 15 7 8 5 1 0 1 0 0.31 0.93 -6068 RAB27B RAB27B, member RAS oncogene family 151648 3 2 3 0 0 1 2 0 0 0 0.31 0.93 -6069 MMP20 matrix metallopeptidase 20 (enamelysin) 334208 3 3 3 0 1 0 1 1 0 0 0.31 0.93 -6070 HIST1H2AL histone cluster 1, H2al 88928 1 1 1 1 0 0 1 0 0 0 0.31 0.93 -6071 LRRC4 leucine rich repeat containing 4 410228 7 5 7 0 3 2 0 1 1 0 0.31 0.93 -6072 PCDHGB1 protocadherin gamma subfamily B, 1 610652 9 8 8 0 5 1 1 0 2 0 0.31 0.93 -6073 TMEM159 transmembrane protein 159 112448 1 1 1 2 0 0 1 0 0 0 0.31 0.93 -6074 HGSNAT heparan-alpha-glucosaminide N-acetyltransferase 416192 6 4 6 2 1 3 0 0 2 0 0.31 0.93 -6075 MCART6 mitochondrial carrier triple repeat 6 207872 2 2 2 0 1 1 0 0 0 0 0.31 0.93 -6076 GNAS GNAS complex locus 688532 6 6 6 1 3 2 1 0 0 0 0.31 0.93 -6077 GHRL ghrelin/obestatin preprohormone 82880 1 1 1 0 0 1 0 0 0 0 0.31 0.93 -6078 IMPDH2 IMP (inosine monophosphate) dehydrogenase 2 358624 4 3 4 2 0 3 0 0 1 0 0.31 0.93 -6079 ZNF192 zinc finger protein 192 393568 3 3 3 2 0 2 1 0 0 0 0.31 0.93 -6080 SLC6A17 solute carrier family 6, member 17 496804 4 4 4 4 3 0 1 0 0 0 0.31 0.93 -6081 FAM82B family with sequence similarity 82, member B 205000 2 2 2 1 0 1 0 0 1 0 0.31 0.93 -6082 YIPF5 Yip1 domain family, member 5 177856 2 2 2 0 1 1 0 0 0 0 0.31 0.93 -6083 VIPAR 348992 4 4 4 0 1 2 1 0 0 0 0.31 0.93 -6084 LTF lactotransferrin 341248 4 4 4 0 2 1 1 0 0 0 0.31 0.93 -6085 E2F8 E2F transcription factor 8 594048 5 5 5 5 1 0 3 0 1 0 0.31 0.93 -6086 TMX2 206752 3 3 3 0 0 1 2 0 0 0 0.31 0.93 -6087 IFITM1 interferon induced transmembrane protein 1 (9-27) 86464 1 1 1 0 0 1 0 0 0 0 0.32 0.93 -6088 ACAD11 acyl-Coenzyme A dehydrogenase family, member 11 542752 5 5 5 3 0 5 0 0 0 0 0.32 0.93 -6089 KLF5 Kruppel-like factor 5 (intestinal) 252000 2 2 2 1 0 1 1 0 0 0 0.32 0.93 -6090 TRPC1 transient receptor potential cation channel, subfamily C, member 1 521064 6 5 6 2 1 3 1 0 1 0 0.32 0.93 -6091 FCRL2 Fc receptor-like 2 352800 4 3 4 3 1 2 1 0 0 0 0.32 0.93 -6092 NLRP12 NLR family, pyrin domain containing 12 715400 12 8 12 5 7 3 2 0 0 0 0.32 0.93 -6093 INTS6 integrator complex subunit 6 614880 7 6 7 2 4 1 2 0 0 0 0.32 0.93 -6094 C5AR1 complement component 5a receptor 1 237440 3 3 3 0 2 0 1 0 0 0 0.32 0.93 -6095 STOX1 storkhead box 1 598528 5 5 5 0 1 3 0 0 1 0 0.32 0.93 -6096 RSAD1 radical S-adenosyl methionine domain containing 1 274456 3 3 3 0 1 1 0 0 1 0 0.32 0.93 -6097 MFAP3L microfibrillar-associated protein 3-like 275884 3 3 3 3 1 1 0 0 1 0 0.32 0.93 -6098 TMEM33 transmembrane protein 33 172928 2 2 2 1 1 1 0 0 0 0 0.32 0.93 -6099 NUAK1 NUAK family, SNF1-like kinase, 1 441648 6 6 6 2 3 2 1 0 0 0 0.32 0.93 -6100 C1orf141 chromosome 1 open reading frame 141 274848 4 3 4 1 1 2 1 0 0 0 0.32 0.93 -6101 ENOX1 ecto-NOX disulfide-thiol exchanger 1 444724 3 3 3 4 0 1 0 0 2 0 0.32 0.93 -6102 COL1A1 collagen, type I, alpha 1 992284 11 8 11 7 4 4 1 0 2 0 0.32 0.93 -6103 STON2 stonin 2 611800 6 6 6 1 0 4 2 0 0 0 0.32 0.93 -6104 RAB7L1 RAB7, member RAS oncogene family-like 1 141568 2 2 1 1 2 0 0 0 0 0 0.32 0.93 -6105 AP2A1 adaptor-related protein complex 2, alpha 1 subunit 569224 3 3 3 1 0 1 0 0 2 0 0.32 0.93 -6106 CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 349664 3 3 3 1 0 1 2 0 0 0 0.32 0.93 -6107 CNTN5 contactin 5 738640 8 6 7 4 2 3 1 1 1 0 0.32 0.93 -6108 TMTC4 transmembrane and tetratricopeptide repeat containing 4 527520 4 4 4 1 2 1 1 0 0 0 0.32 0.93 -6109 SLC10A4 solute carrier family 10 (sodium/bile acid cotransporter family), member 4 188496 1 1 1 0 0 0 0 0 1 0 0.32 0.93 -6110 PNPLA3 patatin-like phospholipase domain containing 3 315924 4 4 4 3 1 2 1 0 0 0 0.32 0.93 -6111 STEAP1 six transmembrane epithelial antigen of the prostate 1 232064 2 2 2 1 0 0 2 0 0 0 0.32 0.93 -6112 KCTD16 potassium channel tetramerisation domain containing 16 289660 3 3 3 0 3 0 0 0 0 0 0.32 0.93 -6113 RPRD1A 216472 3 3 3 0 1 1 1 0 0 0 0.32 0.93 -6114 DEFB127 defensin, beta 127 68992 1 1 1 0 0 1 0 0 0 0 0.32 0.93 -6115 GLOD5 glyoxalase domain containing 5 96632 1 1 1 0 0 1 0 0 0 0 0.32 0.93 -6116 LY75 lymphocyte antigen 75 1167264 7 7 7 5 0 2 2 0 3 0 0.32 0.93 -6117 AKR1C3 aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) 212328 2 2 2 1 0 1 1 0 0 0 0.32 0.93 -6118 NXPH2 neurexophilin 2 167552 2 2 2 1 1 0 1 0 0 0 0.32 0.93 -6119 GTSF1L gametocyte specific factor 1-like 101024 1 1 1 1 0 0 1 0 0 0 0.32 0.93 -6120 MRI1 196504 2 2 2 0 0 1 0 0 1 0 0.32 0.93 -6121 COQ9 coenzyme Q9 homolog (S. cerevisiae) 205184 2 2 2 1 0 1 0 1 0 0 0.32 0.93 -6122 ZWILCH Zwilch, kinetochore associated, homolog (Drosophila) 413952 4 4 4 0 0 2 2 0 0 0 0.32 0.93 -6123 SSX2IP synovial sarcoma, X breakpoint 2 interacting protein 424928 4 4 4 0 1 3 0 0 0 0 0.32 0.93 -6124 C6orf81 chromosome 6 open reading frame 81 252672 3 3 3 0 0 3 0 0 0 0 0.32 0.93 -6125 C14orf166 chromosome 14 open reading frame 166 169876 2 2 2 1 0 1 0 0 1 0 0.32 0.93 -6126 DHFRL1 dihydrofolate reductase-like 1 127232 2 2 2 0 0 1 1 0 0 0 0.32 0.93 -6127 GLYAT glycine-N-acyltransferase 204960 2 2 2 1 1 0 1 0 0 0 0.32 0.94 -6128 MGC29506 91008 1 1 1 0 1 0 0 0 0 0 0.32 0.94 -6129 SLC43A3 solute carrier family 43, member 3 341104 3 3 3 2 2 0 1 0 0 0 0.32 0.94 -6130 DCLK2 doublecortin-like kinase 2 495992 7 5 6 0 1 5 0 0 1 0 0.32 0.94 -6131 TBCCD1 TBCC domain containing 1 380352 5 5 5 2 1 3 1 0 0 0 0.32 0.94 -6132 MMS19 MMS19 nucleotide excision repair homolog (S. cerevisiae) 641856 5 5 5 0 1 4 0 0 0 0 0.32 0.94 -6133 CTDSP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 166348 2 2 2 0 1 0 1 0 0 0 0.32 0.94 -6134 CEACAM19 carcinoembryonic antigen-related cell adhesion molecule 19 209440 2 2 2 0 0 0 2 0 0 0 0.32 0.94 -6135 TRIM58 tripartite motif-containing 58 254200 3 3 3 1 0 3 0 0 0 0 0.32 0.94 -6136 F2RL2 coagulation factor II (thrombin) receptor-like 2 253792 3 3 3 0 2 1 0 0 0 0 0.32 0.94 -6137 WASF3 WAS protein family, member 3 345100 5 4 5 0 3 2 0 0 0 0 0.32 0.94 -6138 TIMM8B translocase of inner mitochondrial membrane 8 homolog B (yeast) 60480 1 1 1 0 1 0 0 0 0 0 0.32 0.94 -6139 COX18 COX18 cytochrome c oxidase assembly homolog (S. cerevisiae) 160216 3 3 3 1 2 1 0 0 0 0 0.32 0.94 -6140 ZNF630 zinc finger protein 630 436104 4 4 4 3 0 3 1 0 0 0 0.32 0.94 -6141 PIAS1 protein inhibitor of activated STAT, 1 441168 4 4 4 1 2 0 1 0 1 0 0.32 0.94 -6142 DUSP19 dual specificity phosphatase 19 150080 3 2 3 0 1 1 1 0 0 0 0.32 0.94 -6143 C1GALT1C1 C1GALT1-specific chaperone 1 215264 2 2 2 0 0 2 0 0 0 0 0.32 0.94 -6144 HHIPL2 HHIP-like 2 493836 5 5 5 0 2 1 2 0 0 0 0.32 0.94 -6145 KRT25 keratin 25 310240 3 3 3 1 0 2 1 0 0 0 0.32 0.94 -6146 TRIT1 tRNA isopentenyltransferase 1 323808 4 4 4 1 1 2 1 0 0 0 0.32 0.94 -6147 LIMK1 LIM domain kinase 1 429676 5 5 5 1 4 0 0 0 1 0 0.32 0.94 -6148 GPR18 G protein-coupled receptor 18 224000 2 2 2 0 0 0 1 0 1 0 0.32 0.94 -6149 NPPA natriuretic peptide precursor A 104748 1 1 1 0 1 0 0 0 0 0 0.32 0.94 -6150 CCDC7 coiled-coil domain containing 7 326856 3 3 3 0 0 2 1 0 0 0 0.32 0.94 -6151 GALK2 galactokinase 2 316256 3 3 3 0 1 1 1 0 0 0 0.32 0.94 -6152 SS18 synovial sarcoma translocation, chromosome 18 289792 2 2 2 2 1 1 0 0 0 0 0.32 0.94 -6153 TRNAU1AP 197384 2 2 2 0 0 2 0 0 0 0 0.32 0.94 -6154 TMEM90B 175308 2 2 2 0 1 1 0 0 0 0 0.32 0.94 -6155 A4GALT alpha 1,4-galactosyltransferase (globotriaosylceramide synthase) 183680 3 2 3 3 2 0 0 0 1 0 0.32 0.94 -6156 DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 339796 4 4 4 3 1 1 2 0 0 0 0.32 0.94 -6157 MYO1H myosin IH 695384 7 5 7 2 1 1 3 0 2 0 0.32 0.94 -6158 KCNK18 potassium channel, subfamily K, member 18 257628 6 4 6 0 3 2 1 0 0 0 0.32 0.94 -6159 LGALS7B 43204 1 1 1 0 1 0 0 0 0 0 0.32 0.94 -6160 RPL6 ribosomal protein L6 192528 3 3 2 1 0 1 2 0 0 0 0.32 0.94 -6161 PRMT3 protein arginine methyltransferase 3 364672 3 3 3 0 0 1 1 0 1 0 0.32 0.94 -6162 ZBTB44 zinc finger and BTB domain containing 44 307528 4 3 4 0 0 3 0 0 1 0 0.32 0.94 -6163 C16orf73 chromosome 16 open reading frame 73 140448 1 1 1 0 0 0 0 0 1 0 0.32 0.94 -6164 THOC5 THO complex 5 476672 4 4 4 0 2 1 0 0 1 0 0.32 0.94 -6165 KIAA0240 KIAA0240 735616 6 6 6 1 1 3 2 0 0 0 0.32 0.94 -6166 PGGT1B protein geranylgeranyltransferase type I, beta subunit 262080 2 2 2 0 0 1 0 0 1 0 0.32 0.94 -6167 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 168672 2 2 2 0 0 0 2 0 0 0 0.32 0.94 -6168 CENPC1 centromere protein C 1 607432 3 3 3 3 0 1 1 0 1 0 0.32 0.94 -6169 SCGBL 61208 1 1 1 1 1 0 0 0 0 0 0.32 0.94 -6170 SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 339584 2 2 2 0 0 1 0 0 1 0 0.32 0.94 -6171 ZNF776 zinc finger protein 776 328512 3 3 3 0 1 1 0 0 1 0 0.32 0.94 -6172 C2orf40 chromosome 2 open reading frame 40 85120 1 1 1 0 0 1 0 0 0 0 0.32 0.94 -6173 GPR116 G protein-coupled receptor 116 923104 11 7 11 3 4 4 3 0 0 0 0.32 0.94 -6174 C19orf40 chromosome 19 open reading frame 40 148736 2 2 2 0 0 2 0 0 0 0 0.32 0.94 -6175 HOMEZ homeobox and leucine zipper encoding 347448 3 3 3 0 2 0 0 0 1 0 0.32 0.94 -6176 SCN3B sodium channel, voltage-gated, type III, beta 149632 2 2 2 0 1 1 0 0 0 0 0.32 0.94 -6177 C12orf68 112756 1 1 1 0 0 0 0 0 1 0 0.32 0.94 -6178 ALDH3A2 aldehyde dehydrogenase 3 family, member A2 333736 4 4 4 1 1 2 1 0 0 0 0.32 0.94 -6179 LMX1B LIM homeobox transcription factor 1, beta 238980 3 3 3 0 2 1 0 0 0 0 0.32 0.94 -6180 PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) 189056 3 3 3 0 0 3 0 0 0 0 0.32 0.94 -6181 CA2 carbonic anhydrase II 173152 1 1 1 0 0 0 0 0 1 0 0.32 0.94 -6182 PTGES3 prostaglandin E synthase 3 (cytosolic) 114856 1 1 1 0 0 0 1 0 0 0 0.32 0.94 -6183 EPHA4 EPH receptor A4 678496 6 6 6 1 4 2 0 0 0 0 0.32 0.94 -6184 ODF2 outer dense fiber of sperm tails 2 601840 6 6 6 1 3 3 0 0 0 0 0.32 0.94 -6185 EIF4E2 eukaryotic translation initiation factor 4E family member 2 168320 2 2 2 0 1 1 0 0 0 0 0.32 0.94 -6186 HSD17B6 hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse) 217280 2 2 2 0 1 1 0 0 0 0 0.32 0.94 -6187 FGF21 fibroblast growth factor 21 143304 2 2 2 0 1 0 1 0 0 0 0.32 0.94 -6188 AP3S2 adaptor-related protein complex 3, sigma 2 subunit 125816 2 2 2 1 1 1 0 0 0 0 0.32 0.94 -6189 PREP prolyl endopeptidase 484568 5 4 5 2 2 2 1 0 0 0 0.32 0.94 -6190 ATP1B4 ATPase, (Na+)/K+ transporting, beta 4 polypeptide 247744 3 2 3 0 0 1 1 0 1 0 0.32 0.94 -6191 POP1 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) 702240 7 6 7 1 5 1 1 0 0 0 0.32 0.94 -6192 MYPOP 83916 1 1 1 1 0 0 0 0 1 0 0.32 0.94 -6193 NOVA2 neuro-oncological ventral antigen 2 223368 3 3 3 2 2 1 0 0 0 0 0.32 0.94 -6194 ATP6V1H ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H 336760 3 3 3 2 1 2 0 0 0 0 0.32 0.94 -6195 C8orf22 chromosome 8 open reading frame 22 58688 1 1 1 0 0 1 0 0 0 0 0.32 0.94 -6196 MTMR7 myotubularin related protein 7 452928 5 5 5 0 2 2 1 0 0 0 0.32 0.94 -6197 ERLEC1 337792 3 3 3 1 1 1 1 0 0 0 0.32 0.94 -6198 GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 1406080 10 10 10 4 3 3 1 0 3 0 0.32 0.94 -6199 OR1G1 olfactory receptor, family 1, subfamily G, member 1 211904 2 2 2 2 0 2 0 0 0 0 0.32 0.94 -6200 CNOT6L CCR4-NOT transcription complex, subunit 6-like 384384 3 3 3 0 2 0 0 0 1 0 0.32 0.94 -6201 ZNF321 zinc finger protein 321 111776 1 1 1 0 1 0 0 0 0 0 0.32 0.94 -6202 ATAD5 ATPase family, AAA domain containing 5 1260448 13 9 13 5 1 7 4 0 1 0 0.32 0.94 -6203 SPOPL speckle-type POZ protein-like 273056 2 2 2 0 0 1 1 0 0 0 0.32 0.94 -6204 C2orf66 chromosome 2 open reading frame 66 81088 1 1 1 1 0 1 0 0 0 0 0.32 0.94 -6205 C19orf73 75320 1 1 1 0 0 0 0 0 1 0 0.32 0.94 -6206 USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) 572576 7 5 7 1 4 1 0 0 2 0 0.32 0.94 -6207 SORBS1 sorbin and SH3 domain containing 1 906052 11 8 9 1 5 3 1 1 1 0 0.32 0.94 -6208 SLC8A3 solute carrier family 8 (sodium-calcium exchanger), member 3 652232 7 6 7 5 2 4 1 0 0 0 0.32 0.94 -6209 ISCA1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) 71904 1 1 1 0 0 1 0 0 0 0 0.32 0.94 -6210 PFDN6 prefoldin subunit 6 90944 1 1 1 0 0 0 1 0 0 0 0.32 0.94 -6211 SLC17A1 solute carrier family 17 (sodium phosphate), member 1 324352 6 4 6 0 2 2 2 0 0 0 0.32 0.94 -6212 NUP43 nucleoporin 43kDa 263200 2 2 2 0 1 1 0 0 0 0 0.32 0.94 -6213 MOGAT3 monoacylglycerol O-acyltransferase 3 236096 2 2 2 1 0 1 1 0 0 0 0.32 0.94 -6214 C17orf48 chromosome 17 open reading frame 48 233184 2 2 2 0 0 2 0 0 0 0 0.32 0.94 -6215 PABPN1 poly(A) binding protein, nuclear 1 133056 1 1 1 0 0 0 0 0 1 0 0.32 0.94 -6216 AKAP10 A kinase (PRKA) anchor protein 10 438368 3 3 3 1 0 2 0 0 1 0 0.32 0.94 -6217 ZNF267 zinc finger protein 267 503552 12 6 12 2 5 4 3 0 0 0 0.32 0.94 -6218 SPERT spermatid associated 233028 3 3 3 2 3 0 0 0 0 0 0.32 0.94 -6219 OR2F2 olfactory receptor, family 2, subfamily F, member 2 214592 2 2 2 0 1 1 0 0 0 0 0.32 0.94 -6220 ZNF281 zinc finger protein 281 533248 5 4 5 1 1 2 0 0 2 0 0.32 0.94 -6221 ADCK4 aarF domain containing kinase 4 378700 3 3 3 0 0 1 0 0 2 0 0.32 0.94 -6222 CBS cystathionine-beta-synthase 323656 3 3 3 0 1 1 0 0 1 0 0.32 0.94 -6223 KLHL6 kelch-like 6 (Drosophila) 417032 5 5 5 0 1 2 2 0 0 0 0.32 0.94 -6224 DSG4 desmoglein 4 739564 9 6 9 2 3 3 1 0 2 0 0.32 0.94 -6225 PPP2R3A protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha 815584 5 5 5 1 2 1 1 0 1 0 0.32 0.94 -6226 FILIP1L filamin A interacting protein 1-like 772576 8 7 8 5 2 1 4 0 1 0 0.32 0.94 -6227 CCDC82 coiled-coil domain containing 82 372512 5 4 5 0 1 1 3 0 0 0 0.32 0.94 -6228 CD5L CD5 molecule-like 239232 4 3 4 5 2 2 0 0 0 0 0.32 0.94 -6229 CASS4 Cas scaffolding protein family member 4 533232 5 5 5 1 1 4 0 0 0 0 0.32 0.94 -6230 DEF6 differentially expressed in FDCP 6 homolog (mouse) 373064 3 3 3 1 1 1 0 0 1 0 0.32 0.94 -6231 IGBP1 immunoglobulin (CD79A) binding protein 1 233856 3 3 3 0 1 1 1 0 0 0 0.32 0.94 -6232 PEX26 peroxisome biogenesis factor 26 187516 3 3 3 0 0 1 2 0 0 0 0.32 0.94 -6233 HSPB11 101920 1 1 1 0 1 0 0 0 0 0 0.32 0.94 -6234 NPPB natriuretic peptide precursor B 93240 1 1 1 2 1 0 0 0 0 0 0.32 0.94 -6235 THAP4 THAP domain containing 4 147224 1 1 1 0 0 0 0 0 1 0 0.32 0.94 -6236 RAB8B RAB8B, member RAS oncogene family 146944 2 2 2 0 0 1 1 0 0 0 0.32 0.94 -6237 ZNF473 zinc finger protein 473 589568 6 6 6 3 1 2 3 0 0 0 0.32 0.94 -6238 ALDH1A1 aldehyde dehydrogenase 1 family, member A1 348992 4 4 4 0 0 2 2 0 0 0 0.32 0.94 -6239 DDR2 discoidin domain receptor tyrosine kinase 2 589568 7 6 7 3 2 4 1 0 0 0 0.32 0.94 -6240 C6orf186 chromosome 6 open reading frame 186 178976 2 2 2 0 1 1 0 0 0 0 0.32 0.94 -6241 NKD1 naked cuticle homolog 1 (Drosophila) 275128 3 3 3 2 2 0 0 0 1 0 0.32 0.94 -6242 FAM198B 370328 5 5 5 2 2 3 0 0 0 0 0.32 0.94 -6243 KRT34 keratin 34 299936 4 4 4 0 1 3 0 0 0 0 0.33 0.94 -6244 SEPT14 septin 14 280320 3 3 3 1 1 0 2 0 0 0 0.33 0.94 -6245 KCNJ10 potassium inwardly-rectifying channel, subfamily J, member 10 256256 3 3 3 1 2 0 1 0 0 0 0.33 0.94 -6246 TSPAN11 tetraspanin 11 163016 2 2 2 0 1 1 0 0 0 0 0.33 0.94 -6247 CDO1 cysteine dioxygenase, type I 139552 1 1 1 1 0 0 1 0 0 0 0.33 0.94 -6248 IQCK IQ motif containing K 199016 2 2 2 0 1 0 0 0 1 0 0.33 0.94 -6249 COBRA1 cofactor of BRCA1 316992 3 3 3 2 2 0 1 0 0 0 0.33 0.94 -6250 IFI27L2 91616 1 1 1 0 0 1 0 0 0 0 0.33 0.94 -6251 AKNA AT-hook transcription factor 947616 6 6 6 2 1 0 3 0 2 0 0.33 0.94 -6252 PDZD7 PDZ domain containing 7 266416 4 4 4 1 2 2 0 0 0 0 0.33 0.94 -6253 TAGAP T-cell activation RhoGTPase activating protein 504000 5 5 5 3 3 0 1 0 1 0 0.33 0.94 -6254 KCNA5 potassium voltage-gated channel, shaker-related subfamily, member 5 349244 4 4 3 4 2 0 1 1 0 0 0.33 0.94 -6255 N4BP1 NEDD4 binding protein 1 563808 4 4 4 1 1 1 1 0 1 0 0.33 0.94 -6256 CCDC92 coiled-coil domain containing 92 226688 3 3 3 2 2 1 0 0 0 0 0.33 0.94 -6257 RNF141 ring finger protein 141 159712 2 2 2 0 2 0 0 0 0 0 0.33 0.94 -6258 SEL1L3 730464 6 6 6 0 2 1 1 0 2 0 0.33 0.94 -6259 FAM164A 224416 2 2 2 1 1 0 1 0 0 0 0.33 0.94 -6260 OLA1 Obg-like ATPase 1 275744 2 2 2 0 1 0 1 0 0 0 0.33 0.94 -6261 GATAD2B GATA zinc finger domain containing 2B 408128 3 3 3 2 2 0 1 0 0 0 0.33 0.94 -6262 RAGE renal tumor antigen 292992 3 3 3 0 2 0 0 0 1 0 0.33 0.94 -6263 PDGFC platelet derived growth factor C 237888 3 3 3 1 0 3 0 0 0 0 0.33 0.94 -6264 DNAJC21 DnaJ (Hsp40) homolog, subfamily C, member 21 394380 3 3 3 1 0 2 0 0 1 0 0.33 0.94 -6265 LAMP3 lysosomal-associated membrane protein 3 273728 3 3 3 3 2 1 0 0 0 0 0.33 0.94 -6266 RBM27 RNA binding motif protein 27 723240 5 5 5 2 1 2 0 0 2 0 0.33 0.94 -6267 CYB5R2 cytochrome b5 reductase 2 193312 2 2 2 1 0 1 0 0 1 0 0.33 0.94 -6268 IPMK inositol polyphosphate multikinase 272328 3 2 3 0 0 0 1 0 0 2 0.33 0.94 -6269 PRELP proline/arginine-rich end leucine-rich repeat protein 256396 3 3 3 4 0 2 1 0 0 0 0.33 0.94 -6270 ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2) 455464 4 3 4 0 2 1 0 0 1 0 0.33 0.94 -6271 NKX2-2 NK2 homeobox 2 159516 2 2 2 0 0 1 0 0 1 0 0.33 0.94 -6272 CXCL10 chemokine (C-X-C motif) ligand 10 70112 1 1 1 0 0 0 1 0 0 0 0.33 0.94 -6273 S100A11 S100 calcium binding protein A11 73920 1 1 1 0 0 1 0 0 0 0 0.33 0.94 -6274 CDCA4 cell division cycle associated 4 162428 2 2 2 0 1 0 1 0 0 0 0.33 0.94 -6275 MADD MAP-kinase activating death domain 1138816 14 10 14 5 6 2 4 0 2 0 0.33 0.94 -6276 MRAP melanocortin 2 receptor accessory protein 134680 2 1 2 0 1 0 0 0 1 0 0.33 0.94 -6277 KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 675360 8 6 8 6 2 5 0 0 1 0 0.33 0.94 -6278 BCL2L15 BCL2-like 15 113792 1 1 1 1 0 0 1 0 0 0 0.33 0.94 -6279 CASP6 caspase 6, apoptosis-related cysteine peptidase 203840 2 2 2 1 0 0 1 0 1 0 0.33 0.94 -6280 GTF3C6 general transcription factor IIIC, polypeptide 6, alpha 35kDa 138160 1 1 1 0 0 0 0 0 1 0 0.33 0.94 -6281 SNX11 sorting nexin 11 187488 2 2 2 1 0 1 1 0 0 0 0.33 0.94 -6282 TTC21B tetratricopeptide repeat domain 21B 905408 8 6 8 1 3 2 2 0 1 0 0.33 0.94 -6283 BLMH bleomycin hydrolase 313376 4 3 4 1 0 1 3 0 0 0 0.33 0.94 -6284 OR2Y1 olfactory receptor, family 2, subfamily Y, member 1 210560 2 2 2 1 0 1 1 0 0 0 0.33 0.94 -6285 ZNF25 zinc finger protein 25 311584 4 3 4 1 0 3 1 0 0 0 0.33 0.94 -6286 OR51T1 olfactory receptor, family 51, subfamily T, member 1 239456 3 3 3 1 1 2 0 0 0 0 0.33 0.94 -6287 CRTAC1 cartilage acidic protein 1 406192 5 5 5 2 2 2 1 0 0 0 0.33 0.94 -6288 ZNF230 zinc finger protein 230 322784 2 2 2 0 0 0 1 0 1 0 0.33 0.94 -6289 TMEM207 transmembrane protein 207 103264 1 1 1 1 0 0 1 0 0 0 0.33 0.94 -6290 C9orf128 chromosome 9 open reading frame 128 191296 2 2 2 1 1 1 0 0 0 0 0.33 0.94 -6291 BMP6 bone morphogenetic protein 6 257488 3 3 3 3 1 0 2 0 0 0 0.33 0.94 -6292 DRG1 developmentally regulated GTP binding protein 1 255360 2 2 2 0 0 2 0 0 0 0 0.33 0.94 -6293 KCNH2 potassium voltage-gated channel, subfamily H (eag-related), member 2 552052 5 5 5 1 2 1 1 0 1 0 0.33 0.94 -6294 MCTP1 multiple C2 domains, transmembrane 1 589416 7 5 7 6 0 6 0 0 1 0 0.33 0.94 -6295 ZNF175 zinc finger protein 175 482048 4 4 4 3 3 1 0 0 0 0 0.33 0.94 -6296 OR51Q1 olfactory receptor, family 51, subfamily Q, member 1 214592 2 2 2 1 0 2 0 0 0 0 0.33 0.94 -6297 ATAD1 ATPase family, AAA domain containing 1 251328 3 2 3 0 0 2 0 0 1 0 0.33 0.94 -6298 OLIG3 oligodendrocyte transcription factor 3 145208 2 2 2 0 1 0 1 0 0 0 0.33 0.94 -6299 UNC93A unc-93 homolog A (C. elegans) 314944 4 4 4 3 3 0 1 0 0 0 0.33 0.94 -6300 SIAE sialic acid acetylesterase 361088 4 4 4 0 3 0 0 0 1 0 0.33 0.94 -6301 SLC25A44 solute carrier family 25, member 44 214368 2 2 2 0 0 0 1 1 0 0 0.33 0.94 -6302 COL23A1 collagen, type XXIII, alpha 1 285728 3 3 3 0 1 1 0 0 1 0 0.33 0.94 -6303 DOLK dolichol kinase 362012 4 4 4 1 1 2 1 0 0 0 0.33 0.94 -6304 AKAP4 A kinase (PRKA) anchor protein 4 579936 4 4 4 2 0 4 0 0 0 0 0.33 0.94 -6305 FHIT fragile histidine triad gene 103936 1 1 1 0 1 0 0 0 0 0 0.33 0.94 -6306 ACVR1C activin A receptor, type IC 326284 3 3 3 3 1 1 1 0 0 0 0.33 0.94 -6307 SLC22A11 solute carrier family 22 (organic anion/urate transporter), member 11 351152 4 4 4 1 1 1 1 0 1 0 0.33 0.94 -6308 ETV3L ets variant gene 3-like 243392 2 2 2 0 1 1 0 0 0 0 0.33 0.94 -6309 RHCG Rh family, C glycoprotein 326352 4 4 4 1 2 0 2 0 0 0 0.33 0.94 -6310 HTR7 5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled) 289296 7 5 7 2 3 3 1 0 0 0 0.33 0.94 -6311 ALG2 asparagine-linked glycosylation 2 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase) 231028 3 3 2 0 0 2 1 0 0 0 0.33 0.94 -6312 ZDHHC23 zinc finger, DHHC-type containing 23 280000 5 3 5 0 1 2 1 0 1 0 0.33 0.94 -6313 TMEM63A transmembrane protein 63A 559684 4 4 4 1 1 2 0 0 1 0 0.33 0.94 -6314 ALAS1 aminolevulinate, delta-, synthase 1 439712 6 5 6 1 3 3 0 0 0 0 0.33 0.94 -6315 HEATR5B HEAT repeat containing 5B 1423744 10 8 10 1 2 1 4 0 1 2 0.33 0.94 -6316 WDTC1 WD and tetratricopeptide repeats 1 467796 4 3 4 3 1 1 1 0 1 0 0.33 0.94 -6317 UROS uroporphyrinogen III synthase (congenital erythropoietic porphyria) 166628 1 1 1 1 0 0 0 0 1 0 0.33 0.94 -6318 RAI2 retinoic acid induced 2 357728 3 3 3 1 1 1 0 0 1 0 0.33 0.94 -6319 SLC7A3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 401744 5 4 5 2 0 4 1 0 0 0 0.33 0.94 -6320 STC2 stanniocalcin 2 206948 2 2 2 2 2 0 0 0 0 0 0.33 0.95 -6321 ZNF649 zinc finger protein 649 343616 3 3 3 2 0 1 2 0 0 0 0.33 0.95 -6322 FAM104A family with sequence similarity 104, member A 114584 1 1 1 0 0 0 0 0 1 0 0.33 0.95 -6323 SLC12A5 solute carrier family 12, (potassium-chloride transporter) member 5 761240 9 8 9 4 8 0 0 1 0 0 0.33 0.95 -6324 BRF2 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like 267008 3 3 3 0 0 1 2 0 0 0 0.33 0.95 -6325 SFRS3 splicing factor, arginine/serine-rich 3 115360 1 1 1 0 0 0 1 0 0 0 0.33 0.95 -6326 LCE2D late cornified envelope 2D 75488 1 1 1 0 1 0 0 0 0 0 0.33 0.95 -6327 EFCAB4B EF-hand calcium binding domain 4B 273280 2 2 2 0 0 2 0 0 0 0 0.33 0.95 -6328 C1orf103 chromosome 1 open reading frame 103 521024 6 4 6 1 1 1 4 0 0 0 0.33 0.95 -6329 CXCR5 chemokine (C-X-C motif) receptor 5 241024 3 3 3 2 2 0 1 0 0 0 0.33 0.95 -6330 CD37 CD37 molecule 196672 2 2 2 1 0 0 1 0 1 0 0.33 0.95 -6331 C9orf114 chromosome 9 open reading frame 114 252636 3 3 3 1 1 1 1 0 0 0 0.33 0.95 -6332 PPP2R2B protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform 334208 3 3 2 3 2 1 0 0 0 0 0.33 0.95 -6333 SAAL1 serum amyloid A-like 1 329952 4 3 4 1 0 2 2 0 0 0 0.33 0.95 -6334 SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 285152 3 3 3 0 1 1 1 0 0 0 0.33 0.95 -6335 CHI3L2 chitinase 3-like 2 271712 4 3 4 2 0 4 0 0 0 0 0.33 0.95 -6336 BAAT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) 284256 2 2 2 0 0 1 1 0 0 0 0.33 0.95 -6337 PDZD8 PDZ domain containing 8 688352 7 6 7 1 1 4 1 0 1 0 0.33 0.95 -6338 ALG5 asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase) 221480 3 3 3 0 2 0 0 0 1 0 0.33 0.95 -6339 FMN2 formin 2 980472 7 7 7 5 1 2 3 0 1 0 0.33 0.95 -6340 MPV17L MPV17 mitochondrial membrane protein-like 65632 1 1 1 0 0 1 0 0 0 0 0.33 0.95 -6341 STARD13 StAR-related lipid transfer (START) domain containing 13 790992 5 5 5 1 1 1 2 0 1 0 0.33 0.95 -6342 NRM nurim (nuclear envelope membrane protein) 132208 1 1 1 0 1 0 0 0 0 0 0.33 0.95 -6343 ABCF2 ATP-binding cassette, sub-family F (GCN20), member 2 440720 3 3 3 1 2 0 0 0 1 0 0.33 0.95 -6344 TNFRSF4 tumor necrosis factor receptor superfamily, member 4 110180 1 1 1 0 0 0 0 0 1 0 0.33 0.95 -6345 ZBTB7A zinc finger and BTB domain containing 7A 273124 4 4 4 0 1 1 1 0 1 0 0.33 0.95 -6346 HNRNPK 333760 4 4 4 0 2 1 1 0 0 0 0.33 0.95 -6347 TMEM184C 303968 3 3 3 1 3 0 0 0 0 0 0.33 0.95 -6348 NKIRAS2 NFKB inhibitor interacting Ras-like 2 131712 2 2 2 0 2 0 0 0 0 0 0.33 0.95 -6349 RNF165 ring finger protein 165 216664 4 3 4 0 1 2 1 0 0 0 0.33 0.95 -6350 PMF1 polyamine-modulated factor 1 142912 2 2 2 0 0 2 0 0 0 0 0.33 0.95 -6351 ASPRV1 aspartic peptidase, retroviral-like 1 232064 3 3 3 1 2 0 1 0 0 0 0.33 0.95 -6352 GALNT11 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) 419104 5 5 5 1 4 0 1 0 0 0 0.33 0.95 -6353 KLHDC2 kelch domain containing 2 283304 2 2 2 1 0 1 1 0 0 0 0.33 0.95 -6354 TAL2 T-cell acute lymphocytic leukemia 2 74144 1 1 1 1 0 0 1 0 0 0 0.33 0.95 -6355 RXFP4 relaxin/insulin-like family peptide receptor 4 240464 3 3 3 2 0 2 1 0 0 0 0.33 0.95 -6356 FAM83D family with sequence similarity 83, member D 330008 6 5 6 1 2 4 0 0 0 0 0.33 0.95 -6357 UBR1 ubiquitin protein ligase E3 component n-recognin 1 1218112 10 7 10 3 1 6 2 1 0 0 0.33 0.95 -6358 BTN3A3 butyrophilin, subfamily 3, member A3 401184 4 4 4 0 2 1 1 0 0 0 0.33 0.95 -6359 ANAPC5 anaphase promoting complex subunit 5 523264 3 3 3 2 1 1 0 0 1 0 0.34 0.95 -6360 SBNO1 strawberry notch homolog 1 (Drosophila) 964544 9 7 9 2 4 1 2 0 2 0 0.34 0.95 -6361 PSMB6 proteasome (prosome, macropain) subunit, beta type, 6 160808 2 2 2 1 1 1 0 0 0 0 0.34 0.95 -6362 IL15RA interleukin 15 receptor, alpha 165760 1 1 1 0 0 0 0 0 1 0 0.34 0.95 -6363 TRAPPC4 trafficking protein particle complex 4 152320 2 2 2 0 0 1 1 0 0 0 0.34 0.95 -6364 LAMB3 laminin, beta 3 805708 9 7 9 1 4 3 1 0 1 0 0.34 0.95 -6365 IL8 interleukin 8 70784 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6366 H2AFZ H2A histone family, member Z 91168 1 1 1 0 0 0 0 0 1 0 0.34 0.95 -6367 EDAR ectodysplasin A receptor 311584 3 3 3 0 1 1 1 0 0 0 0.34 0.95 -6368 IGSF9B immunoglobulin superfamily, member 9B 826064 9 8 9 3 5 1 2 0 1 0 0.34 0.95 -6369 TMEM38B transmembrane protein 38B 201600 2 2 2 1 0 1 1 0 0 0 0.34 0.95 -6370 SAP18 Sin3A-associated protein, 18kDa 119840 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6371 CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) 569828 7 5 7 1 2 2 2 0 1 0 0.34 0.95 -6372 TBC1D24 TBC1 domain family, member 24 361412 3 3 3 0 1 0 0 0 2 0 0.34 0.95 -6373 TMED5 transmembrane emp24 protein transport domain containing 5 158144 2 2 2 0 1 0 1 0 0 0 0.34 0.95 -6374 FLVCR2 feline leukemia virus subgroup C cellular receptor family, member 2 363104 3 3 3 1 1 0 1 0 1 0 0.34 0.95 -6375 OTUD4 OTU domain containing 4 724280 7 6 7 2 2 2 3 0 0 0 0.34 0.95 -6376 PHPT1 phosphohistidine phosphatase 1 93688 1 1 1 0 0 0 0 0 1 0 0.34 0.95 -6377 AMMECR1L AMME chromosomal region gene 1-like 214368 2 2 2 1 1 0 0 0 1 0 0.34 0.95 -6378 C9orf84 chromosome 9 open reading frame 84 1022532 10 7 10 0 0 5 4 0 1 0 0.34 0.95 -6379 RAB33A RAB33A, member RAS oncogene family 161728 2 2 2 0 0 2 0 0 0 0 0.34 0.95 -6380 EXOC3L exocyst complex component 3-like 360884 4 4 4 0 3 0 0 0 1 0 0.34 0.95 -6381 COBL cordon-bleu homolog (mouse) 844256 9 7 9 1 4 2 2 0 1 0 0.34 0.95 -6382 HIST1H2AD histone cluster 1, H2ad 88928 1 1 1 0 0 0 1 0 0 0 0.34 0.95 -6383 VIPR2 vasoactive intestinal peptide receptor 2 255860 3 3 3 1 0 1 2 0 0 0 0.34 0.95 -6384 ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 710052 7 6 7 3 4 3 0 0 0 0 0.34 0.95 -6385 STK24 serine/threonine kinase 24 (STE20 homolog, yeast) 308224 4 4 4 1 2 1 0 0 1 0 0.34 0.95 -6386 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 330260 5 4 5 1 1 3 0 0 1 0 0.34 0.95 -6387 SLC38A11 solute carrier family 38, member 11 266784 3 3 3 1 2 1 0 0 0 0 0.34 0.95 -6388 OR10A2 olfactory receptor, family 10, subfamily A, member 2 205184 3 2 3 1 0 2 1 0 0 0 0.34 0.95 -6389 KLF7 Kruppel-like factor 7 (ubiquitous) 207200 3 3 3 0 2 0 1 0 0 0 0.34 0.95 -6390 ZNF524 zinc finger protein 524 109764 1 1 1 1 0 0 0 0 1 0 0.34 0.95 -6391 CFLAR CASP8 and FADD-like apoptosis regulator 336928 3 3 3 0 0 3 0 0 0 0 0.34 0.95 -6392 ITGA10 integrin, alpha 10 799128 7 6 7 4 3 2 1 0 1 0 0.34 0.95 -6393 CARD16 141120 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6394 RAB3GAP2 RAB3 GTPase activating protein subunit 2 (non-catalytic) 968128 7 6 7 1 3 1 2 0 1 0 0.34 0.95 -6395 RPRD1B 226016 2 2 2 0 0 1 0 0 1 0 0.34 0.95 -6396 ZBED4 zinc finger, BED-type containing 4 762608 8 7 8 3 4 1 2 1 0 0 0.34 0.95 -6397 RBM12B RNA binding motif protein 12B 674156 8 6 8 2 3 2 1 1 1 0 0.34 0.95 -6398 MBLAC1 135668 2 2 2 0 0 2 0 0 0 0 0.34 0.95 -6399 TRIM63 tripartite motif-containing 63 245952 3 3 3 0 1 1 1 0 0 0 0.34 0.95 -6400 TAC4 tachykinin 4 (hemokinin) 81088 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6401 TP53BP2 tumor protein p53 binding protein, 2 774228 6 6 6 2 2 3 0 0 1 0 0.34 0.95 -6402 SFRP4 secreted frizzled-related protein 4 237804 4 4 4 1 3 1 0 0 0 0 0.34 0.95 -6403 ETV1 ets variant gene 1 338640 6 5 6 3 4 1 1 0 0 0 0.34 0.95 -6404 ANKRD53 ankyrin repeat domain 53 202248 3 3 3 0 1 2 0 0 0 0 0.34 0.95 -6405 AGK acylglycerol kinase 294976 3 3 3 1 1 0 2 0 0 0 0.34 0.95 -6406 C11orf53 chromosome 11 open reading frame 53 158004 2 2 2 0 1 1 0 0 0 0 0.34 0.95 -6407 WDR70 WD repeat domain 70 456288 4 4 4 1 1 1 1 0 1 0 0.34 0.95 -6408 TPH1 tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) 308000 3 3 3 0 1 2 0 0 0 0 0.34 0.95 -6409 PTPN3 protein tyrosine phosphatase, non-receptor type 3 636608 7 5 7 1 1 2 1 0 3 0 0.34 0.95 -6410 CDA cytidine deaminase 102368 1 1 1 0 1 0 0 0 0 0 0.34 0.95 -6411 HELLS helicase, lymphoid-specific 578760 5 5 5 2 2 1 0 0 2 0 0.34 0.95 -6412 OR10P1 olfactory receptor, family 10, subfamily P, member 1 211904 2 2 2 1 2 0 0 0 0 0 0.34 0.95 -6413 KCTD13 potassium channel tetramerisation domain containing 13 223300 2 2 2 1 0 1 0 0 1 0 0.34 0.95 -6414 UPK2 uroplakin 2 128800 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6415 RASIP1 Ras interacting protein 1 342580 4 4 4 1 1 2 0 1 0 0 0.34 0.95 -6416 NOP58 369600 3 3 3 0 0 1 1 0 1 0 0.34 0.95 -6417 NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 544736 4 4 4 1 2 1 1 0 0 0 0.34 0.95 -6418 FMO4 flavin containing monooxygenase 4 382816 6 3 6 1 1 2 2 0 1 0 0.34 0.95 -6419 NUP62 nucleoporin 62kDa 352268 3 3 3 1 1 0 0 1 1 0 0.34 0.95 -6420 FABP1 fatty acid binding protein 1, liver 89600 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6421 C12orf26 chromosome 12 open reading frame 26 416640 4 3 4 1 0 0 3 0 1 0 0.34 0.95 -6422 ANXA11 annexin A11 330472 3 3 3 1 1 1 0 0 1 0 0.34 0.95 -6423 DYSFIP1 dysferlin interacting protein 1 69080 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6424 B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 320520 4 4 4 0 2 1 0 0 1 0 0.34 0.95 -6425 ODZ2 odz, odd Oz/ten-m homolog 2 (Drosophila) 1657912 19 15 19 10 7 8 4 0 0 0 0.34 0.95 -6426 DRGX dorsal root ganglia homeobox 171184 2 2 2 0 2 0 0 0 0 0 0.34 0.95 -6427 PTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) 646240 6 5 6 0 3 1 0 1 1 0 0.34 0.95 -6428 HIST1H2AB histone cluster 1, H2ab 88928 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6429 RAD51AP1 RAD51 associated protein 1 246176 3 3 3 0 1 1 1 0 0 0 0.34 0.95 -6430 CENPE centromere protein E, 312kDa 1845368 18 9 18 2 4 7 5 0 0 2 0.34 0.95 -6431 HAS2 hyaluronan synthase 2 374304 4 3 4 1 0 2 1 0 1 0 0.34 0.95 -6432 SYS1 SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) 104344 1 1 1 1 0 1 0 0 0 0 0.34 0.95 -6433 FGD2 FYVE, RhoGEF and PH domain containing 2 438608 4 4 4 1 3 1 0 0 0 0 0.34 0.95 -6434 OR9G4 olfactory receptor, family 9, subfamily G, member 4 221312 2 2 2 1 1 0 0 0 1 0 0.34 0.95 -6435 ZNF404 zinc finger protein 404 371392 3 3 3 3 0 1 2 0 0 0 0.34 0.95 -6436 ACTR2 ARP2 actin-related protein 2 homolog (yeast) 270688 2 2 2 1 0 1 0 0 1 0 0.34 0.95 -6437 IGSF11 immunoglobulin superfamily, member 11 308448 2 2 2 1 1 1 0 0 0 0 0.34 0.95 -6438 NRIP1 nuclear receptor interacting protein 1 779744 6 5 6 0 2 1 2 0 1 0 0.34 0.95 -6439 NAA38 63392 1 1 1 0 0 0 1 0 0 0 0.34 0.95 -6440 HSPB9 heat shock protein, alpha-crystallin-related, B9 108416 1 1 1 0 0 0 1 0 0 0 0.34 0.95 -6441 DRG2 developmentally regulated GTP binding protein 2 247680 1 1 1 2 0 0 0 0 1 0 0.34 0.95 -6442 GABPB2 GA binding protein transcription factor, beta subunit 2 308896 3 3 3 0 1 1 1 0 0 0 0.34 0.95 -6443 HMGB3 high-mobility group box 3 138656 1 1 1 1 0 1 0 0 0 0 0.34 0.95 -6444 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 142912 1 1 1 0 0 0 0 0 1 0 0.34 0.95 -6445 NCAPD2 non-SMC condensin I complex, subunit D2 969920 5 5 5 2 0 1 2 0 2 0 0.34 0.95 -6446 DOCK10 dedicator of cytokinesis 10 1445152 14 10 13 2 2 7 2 0 3 0 0.34 0.95 -6447 TMEM41B transmembrane protein 41B 200312 2 2 2 0 1 1 0 0 0 0 0.34 0.95 -6448 COMMD4 COMM domain containing 4 139120 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6449 CD3D CD3d molecule, delta (CD3-TCR complex) 120064 1 1 1 0 0 0 0 0 1 0 0.34 0.95 -6450 FLJ36031 69144 1 1 1 0 0 0 0 0 1 0 0.34 0.95 -6451 NEUROD6 neurogenic differentiation 6 228032 2 2 2 2 0 1 1 0 0 0 0.34 0.95 -6452 UPK1A uroplakin 1A 177716 2 2 2 2 1 1 0 0 0 0 0.34 0.95 -6453 PRKCQ protein kinase C, theta 490336 5 5 5 1 4 1 0 0 0 0 0.34 0.95 -6454 ANLN anillin, actin binding protein 777504 7 6 7 2 2 3 1 0 1 0 0.34 0.95 -6455 HSPA4 heat shock 70kDa protein 4 576192 6 4 6 2 0 3 2 0 1 0 0.34 0.95 -6456 MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 880320 7 6 7 1 3 2 1 0 1 0 0.34 0.95 -6457 HAUS3 407792 5 3 5 0 0 1 2 0 2 0 0.34 0.95 -6458 ULK4 unc-51-like kinase 4 (C. elegans) 889728 9 7 9 3 2 2 4 0 1 0 0.34 0.95 -6459 MRPL50 mitochondrial ribosomal protein L50 108640 1 1 1 0 0 0 1 0 0 0 0.34 0.95 -6460 MTMR10 myotubularin related protein 10 503696 5 5 5 0 1 3 1 0 0 0 0.34 0.95 -6461 CST4 cystatin S 98112 1 1 1 1 0 0 1 0 0 0 0.34 0.95 -6462 CERKL ceramide kinase-like 382396 4 4 4 0 1 2 1 0 0 0 0.34 0.95 -6463 PLA1A phospholipase A1 member A 316960 3 3 3 3 1 2 0 0 0 0 0.34 0.95 -6464 ZNF547 zinc finger protein 547 273504 4 3 4 0 2 1 1 0 0 0 0.34 0.95 -6465 NUTF2 nuclear transport factor 2 89600 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6466 DPY19L2 dpy-19-like 2 (C. elegans) 514824 6 5 6 2 1 2 2 0 1 0 0.34 0.95 -6467 GNG4 guanine nucleotide binding protein (G protein), gamma 4 52864 1 1 1 0 1 0 0 0 0 0 0.34 0.95 -6468 KLC2 kinesin light chain 2 416932 8 7 8 0 6 2 0 0 0 0 0.34 0.95 -6469 INTS3 integrator complex subunit 3 727776 6 6 6 0 4 1 1 0 0 0 0.34 0.95 -6470 ARHGAP11A Rho GTPase activating protein 11A 704032 5 5 5 3 1 3 0 0 1 0 0.34 0.95 -6471 PPP3CA protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform 363328 3 3 3 0 2 0 0 0 1 0 0.34 0.95 -6472 ZNF248 zinc finger protein 248 393344 5 4 4 0 0 3 2 0 0 0 0.34 0.95 -6473 NUP85 nucleoporin 85kDa 458528 4 4 4 0 2 1 0 1 0 0 0.34 0.95 -6474 DUSP7 dual specificity phosphatase 7 220444 2 2 2 2 1 0 1 0 0 0 0.34 0.95 -6475 AZGP1 alpha-2-glycoprotein 1, zinc-binding 204512 2 2 2 1 0 1 1 0 0 0 0.34 0.95 -6476 C3orf14 chromosome 3 open reading frame 14 90272 1 1 1 0 1 0 0 0 0 0 0.34 0.95 -6477 LIPF lipase, gastric 276192 3 3 3 1 0 2 1 0 0 0 0.34 0.95 -6478 CRISP3 cysteine-rich secretory protein 3 171584 1 1 1 1 0 0 1 0 0 0 0.34 0.95 -6479 SCNN1B sodium channel, nonvoltage-gated 1, beta (Liddle syndrome) 429072 4 4 4 0 2 0 1 0 1 0 0.34 0.95 -6480 DMP1 dentin matrix acidic phosphoprotein 349888 2 2 2 2 0 1 0 0 1 0 0.34 0.95 -6481 NR6A1 nuclear receptor subfamily 6, group A, member 1 308896 3 3 3 1 0 2 1 0 0 0 0.34 0.95 -6482 SECTM1 secreted and transmembrane 1 170912 2 2 2 0 1 1 0 0 0 0 0.34 0.95 -6483 GPR63 G protein-coupled receptor 63 283136 4 3 4 1 1 1 2 0 0 0 0.34 0.95 -6484 ROPN1B ropporin, rhophilin associated protein 1B 145180 1 1 1 1 0 0 0 1 0 0 0.34 0.95 -6485 RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 836392 13 7 13 1 6 4 0 0 1 2 0.34 0.95 -6486 MDFIC MyoD family inhibitor domain containing 167288 2 2 2 1 0 1 1 0 0 0 0.34 0.95 -6487 C9orf43 chromosome 9 open reading frame 43 322112 5 4 5 2 2 3 0 0 0 0 0.34 0.95 -6488 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 73192 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6489 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 257456 4 3 4 3 0 2 2 0 0 0 0.34 0.95 -6490 KCNIP3 Kv channel interacting protein 3, calsenilin 195580 2 2 2 0 0 1 1 0 0 0 0.34 0.95 -6491 ZSCAN5B 306432 3 3 3 1 1 1 1 0 0 0 0.34 0.95 -6492 CPO carboxypeptidase O 260064 3 2 3 0 1 0 2 0 0 0 0.34 0.95 -6493 ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2 435456 3 3 3 2 0 2 0 0 1 0 0.34 0.95 -6494 SLC6A14 solute carrier family 6 (amino acid transporter), member 14 437568 3 3 3 2 1 1 1 0 0 0 0.34 0.95 -6495 PGM1 phosphoglucomutase 1 426300 4 4 4 0 3 0 1 0 0 0 0.34 0.95 -6496 AHCYL1 S-adenosylhomocysteine hydrolase-like 1 361648 4 4 4 0 3 1 0 0 0 0 0.34 0.95 -6497 ELP4 elongation protein 4 homolog (S. cerevisiae) 294560 2 2 2 1 0 1 0 0 1 0 0.34 0.95 -6498 RAI14 retinoic acid induced 14 674464 9 7 9 9 3 4 2 0 0 0 0.34 0.95 -6499 HK1 hexokinase 1 656664 6 6 6 3 3 2 1 0 0 0 0.34 0.95 -6500 C1orf177 chromosome 1 open reading frame 177 263648 4 3 4 2 2 1 1 0 0 0 0.34 0.95 -6501 ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit 38168 1 1 1 0 1 0 0 0 0 0 0.34 0.95 -6502 RPA4 replication protein A4, 34kDa 176960 3 3 3 0 1 2 0 0 0 0 0.34 0.95 -6503 C19orf62 chromosome 19 open reading frame 62 218232 2 2 2 0 0 1 1 0 0 0 0.34 0.95 -6504 SULT1A1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 221984 2 2 2 0 1 0 1 0 0 0 0.34 0.95 -6505 EMCN endomucin 185920 1 1 1 1 0 0 1 0 0 0 0.34 0.95 -6506 ACTA2 actin, alpha 2, smooth muscle, aorta 261184 3 3 3 2 1 2 0 0 0 0 0.34 0.95 -6507 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 444640 4 4 4 0 2 1 0 0 1 0 0.34 0.95 -6508 PUS10 pseudouridylate synthase 10 371392 5 3 5 2 1 2 0 0 2 0 0.34 0.95 -6509 PPPDE2 117852 1 1 1 1 0 1 0 0 0 0 0.34 0.95 -6510 MYL4 myosin, light chain 4, alkali; atrial, embryonic 138432 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6511 SRF serum response factor (c-fos serum response element-binding transcription factor) 250852 3 3 3 0 1 1 1 0 0 0 0.34 0.95 -6512 SEC22B SEC22 vesicle trafficking protein homolog B (S. cerevisiae) 149632 3 2 3 0 1 0 1 0 1 0 0.34 0.95 -6513 TRIML1 tripartite motif family-like 1 313236 4 4 4 2 3 1 0 0 0 0 0.34 0.95 -6514 SDCCAG1 serologically defined colon cancer antigen 1 753312 10 6 10 3 2 4 3 0 1 0 0.34 0.95 -6515 RNF135 ring finger protein 135 211232 2 2 2 0 1 1 0 0 0 0 0.34 0.95 -6516 FAM125B family with sequence similarity 125, member B 192160 2 2 2 2 0 1 0 0 1 0 0.34 0.95 -6517 HPD 4-hydroxyphenylpyruvate dioxygenase 277312 4 4 4 1 1 2 1 0 0 0 0.34 0.95 -6518 POLR2J3 73248 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6519 SNURF SNRPN upstream reading frame 51072 1 1 1 0 0 1 0 0 0 0 0.34 0.95 -6520 ABCD4 ATP-binding cassette, sub-family D (ALD), member 4 424928 5 4 5 0 3 1 0 0 1 0 0.34 0.95 -6521 BRD9 bromodomain containing 9 322728 3 3 3 4 1 1 1 0 0 0 0.34 0.95 -6522 SELT 112360 1 1 1 0 1 0 0 0 0 0 0.34 0.95 -6523 UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 137760 2 2 2 1 1 0 1 0 0 0 0.34 0.95 -6524 ABT1 activator of basal transcription 1 177744 3 3 3 0 1 1 1 0 0 0 0.34 0.95 -6525 NUDT12 nudix (nucleoside diphosphate linked moiety X)-type motif 12 316512 2 2 2 0 0 1 1 0 0 0 0.34 0.95 -6526 AKAP12 A kinase (PRKA) anchor protein (gravin) 12 1170176 14 10 13 6 4 8 1 0 1 0 0.35 0.95 -6527 TRPM2 transient receptor potential cation channel, subfamily M, member 2 925496 11 11 11 5 7 3 0 0 1 0 0.35 0.95 -6528 DNHD1 dynein heavy chain domain 1 1081964 10 8 10 1 4 2 2 0 2 0 0.35 0.95 -6529 VGLL4 vestigial like 4 (Drosophila) 189128 2 2 2 0 1 0 1 0 0 0 0.35 0.95 -6530 C8orf41 chromosome 8 open reading frame 41 344372 5 4 5 4 1 4 0 0 0 0 0.35 0.95 -6531 IQSEC2 IQ motif and Sec7 domain 2 615512 5 5 5 1 1 2 1 0 1 0 0.35 0.95 -6532 RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 219296 3 3 3 0 2 1 0 0 0 0 0.35 0.95 -6533 PPIB peptidylprolyl isomerase B (cyclophilin B) 150220 1 1 1 1 0 0 1 0 0 0 0.35 0.95 -6534 SLC25A15 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 208320 2 2 2 0 0 0 0 1 1 0 0.35 0.95 -6535 SFRS18 splicing factor, arginine/serine-rich 18 550592 5 5 5 0 0 3 1 0 1 0 0.35 0.95 -6536 ZNF107 zinc finger protein 107 528640 7 5 7 3 1 5 1 0 0 0 0.35 0.95 -6537 TMPRSS5 transmembrane protease, serine 5 (spinesin) 189272 2 2 2 0 1 1 0 0 0 0 0.35 0.95 -6538 CDKL4 cyclin-dependent kinase-like 4 219520 2 2 2 0 0 1 0 0 1 0 0.35 0.95 -6539 TTC23 tetratricopeptide repeat domain 23 310016 2 2 2 1 1 0 1 0 0 0 0.35 0.95 -6540 CCDC115 coiled-coil domain containing 115 126112 2 2 2 0 1 0 1 0 0 0 0.35 0.95 -6541 TSHB thyroid stimulating hormone, beta 95200 1 1 1 1 0 1 0 0 0 0 0.35 0.95 -6542 APCDD1 adenomatosis polyposis coli down-regulated 1 338240 5 5 5 0 3 2 0 0 0 0 0.35 0.95 -6543 MTDH metadherin 362068 4 4 4 1 1 2 1 0 0 0 0.35 0.95 -6544 MATN4 matrilin 4 374004 4 4 4 1 2 0 2 0 0 0 0.35 0.95 -6545 BCAS4 breast carcinoma amplified sequence 4 100352 2 2 2 0 2 0 0 0 0 0 0.35 0.95 -6546 SDR39U1 202944 2 2 2 0 1 0 0 0 1 0 0.35 0.95 -6547 TMPO thymopoietin 630616 6 4 6 2 0 1 2 0 0 3 0.35 0.95 -6548 FAM192A 176736 2 2 2 1 1 1 0 0 0 0 0.35 0.95 -6549 TECTB tectorin beta 230720 3 3 2 1 0 3 0 0 0 0 0.35 0.95 -6550 EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 679392 7 6 7 1 4 2 1 0 0 0 0.35 0.95 -6551 PGAP2 219968 3 3 3 1 1 2 0 0 0 0 0.35 0.95 -6552 MORN4 102368 1 1 1 0 0 1 0 0 0 0 0.35 0.95 -6553 GLTSCR1 glioma tumor suppressor candidate region gene 1 343496 3 3 3 1 0 2 0 0 1 0 0.35 0.95 -6554 C2orf56 chromosome 2 open reading frame 56 305984 3 3 3 0 1 0 2 0 0 0 0.35 0.95 -6555 TRABD TraB domain containing 203280 1 1 1 0 0 0 0 0 1 0 0.35 0.95 -6556 PCF11 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) 1032408 10 7 10 2 3 5 1 0 1 0 0.35 0.95 -6557 TTYH1 tweety homolog 1 (Drosophila) 263464 3 3 3 2 0 2 1 0 0 0 0.35 0.95 -6558 SYT9 synaptotagmin IX 303520 5 3 5 3 2 2 1 0 0 0 0.35 0.95 -6559 KDM5C 1045224 9 8 9 0 1 5 1 0 2 0 0.35 0.95 -6560 SVIP 52388 1 1 1 0 0 1 0 0 0 0 0.35 0.95 -6561 TTC1 tetratricopeptide repeat domain 1 203168 2 2 2 1 0 0 1 1 0 0 0.35 0.95 -6562 HP1BP3 heterochromatin protein 1, binding protein 3 383040 4 4 4 0 2 0 2 0 0 0 0.35 0.95 -6563 RANBP6 RAN binding protein 6 744044 6 5 6 2 2 3 0 0 1 0 0.35 0.95 -6564 FBXO47 F-box protein 47 313376 3 3 3 1 0 2 1 0 0 0 0.35 0.95 -6565 EGLN3 egl nine homolog 3 (C. elegans) 158116 2 2 2 0 1 1 0 0 0 0 0.35 0.95 -6566 UBE2CBP ubiquitin-conjugating enzyme E2C binding protein 271040 2 2 2 1 0 2 0 0 0 0 0.35 0.95 -6567 LIPC lipase, hepatic 344064 4 4 4 3 0 2 1 0 1 0 0.35 0.95 -6568 RIBC2 RIB43A domain with coiled-coils 2 204772 2 2 2 1 0 1 0 0 1 0 0.35 0.95 -6569 DPH3 DPH3, KTI11 homolog (S. cerevisiae) 58464 1 1 1 1 0 1 0 0 0 0 0.35 0.95 -6570 RNF113B ring finger protein 113B 212884 4 4 3 0 3 0 1 0 0 0 0.35 0.95 -6571 UGT2B28 UDP glucuronosyltransferase 2 family, polypeptide B28 361536 3 3 3 1 0 2 1 0 0 0 0.35 0.95 -6572 FAM98C family with sequence similarity 98, member C 169932 2 2 2 1 0 1 0 0 1 0 0.35 0.95 -6573 RFX4 regulatory factor X, 4 (influences HLA class II expression) 556640 4 4 4 3 0 1 0 0 3 0 0.35 0.95 -6574 GIMAP2 GTPase, IMAP family member 2 228928 1 1 1 0 0 0 0 0 1 0 0.35 0.95 -6575 C12orf56 chromosome 12 open reading frame 56 304308 3 3 3 1 1 1 0 0 1 0 0.35 0.95 -6576 CYP2F1 cytochrome P450, family 2, subfamily F, polypeptide 1 318628 4 4 4 0 3 0 0 0 1 0 0.35 0.95 -6577 NCF2 neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2) 367584 2 2 2 0 0 1 0 0 1 0 0.35 0.95 -6578 LY9 lymphocyte antigen 9 479192 4 3 4 1 0 2 0 0 0 2 0.35 0.95 -6579 ATP5J2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 69664 1 1 1 0 0 0 1 0 0 0 0.35 0.95 -6580 STRA6 stimulated by retinoic acid gene 6 homolog (mouse) 438592 4 4 4 0 1 2 1 0 0 0 0.35 0.95 -6581 FBXO22 F-box protein 22 267008 4 3 4 0 1 3 0 0 0 0 0.35 0.95 -6582 SERINC1 serine incorporator 1 314048 2 2 2 2 0 1 1 0 0 0 0.35 0.95 -6583 TALDO1 transaldolase 1 225540 3 3 3 2 1 1 1 0 0 0 0.35 0.95 -6584 C11orf41 chromosome 11 open reading frame 41 1239312 11 9 11 5 3 2 3 1 2 0 0.35 0.95 -6585 PAFAH1B1 platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa 285152 3 3 3 1 2 0 1 0 0 0 0.35 0.95 -6586 OR11G2 olfactory receptor, family 11, subfamily G, member 2 233408 2 2 2 2 0 0 1 0 1 0 0.35 0.95 -6587 JSRP1 junctional sarcoplasmic reticulum protein 1 124264 2 2 2 0 1 1 0 0 0 0 0.35 0.95 -6588 KRT6A keratin 6A 387660 4 4 4 3 3 0 1 0 0 0 0.35 0.95 -6589 ELAC1 elaC homolog 1 (E. coli) 247296 4 3 4 0 1 0 3 0 0 0 0.35 0.95 -6590 SPG11 spastic paraplegia 11 (autosomal recessive) 1650040 12 9 11 4 1 4 3 0 4 0 0.35 0.95 -6591 UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 140224 1 1 1 2 0 1 0 0 0 0 0.35 0.95 -6592 CD244 CD244 molecule, natural killer cell receptor 2B4 256256 3 3 3 0 0 3 0 0 0 0 0.35 0.95 -6593 TP53RK TP53 regulating kinase 121352 1 1 1 0 0 0 0 0 1 0 0.35 0.95 -6594 UGT1A5 UDP glucuronosyltransferase 1 family, polypeptide A5 364000 3 3 3 1 1 1 1 0 0 0 0.35 0.95 -6595 TMEM14B transmembrane protein 14B 81760 1 1 1 0 1 0 0 0 0 0 0.35 0.95 -6596 KRTAP5-6 keratin associated protein 5-6 88256 1 1 1 1 0 0 1 0 0 0 0.35 0.95 -6597 CAPRIN1 cell cycle associated protein 1 479248 5 4 5 1 2 1 2 0 0 0 0.35 0.96 -6598 C17orf59 chromosome 17 open reading frame 59 128408 2 2 2 0 0 1 1 0 0 0 0.35 0.96 -6599 NPR2 natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) 719096 10 8 10 3 3 7 0 0 0 0 0.35 0.96 -6600 ZSCAN16 zinc finger and SCAN domain containing 16 237216 2 2 2 2 0 1 1 0 0 0 0.35 0.96 -6601 PCOLCE procollagen C-endopeptidase enhancer 291376 2 2 2 1 0 0 0 0 2 0 0.35 0.96 -6602 LBH limb bud and heart development homolog (mouse) 73920 1 1 1 0 1 0 0 0 0 0 0.35 0.96 -6603 FBXO36 F-box protein 36 130592 1 1 1 0 0 1 0 0 0 0 0.35 0.96 -6604 ARHGAP12 Rho GTPase activating protein 12 585312 9 5 9 2 2 4 2 0 1 0 0.35 0.96 -6605 OR52W1 olfactory receptor, family 52, subfamily W, member 1 216608 2 2 1 0 2 0 0 0 0 0 0.35 0.96 -6606 HUWE1 HECT, UBA and WWE domain containing 1 2966336 18 16 18 7 5 5 7 1 0 0 0.35 0.96 -6607 SETDB2 SET domain, bifurcated 2 496384 3 3 3 0 0 0 2 0 1 0 0.35 0.96 -6608 CPT1B carnitine palmitoyltransferase 1B (muscle) 496692 5 4 5 0 0 3 0 0 2 0 0.35 0.96 -6609 C14orf177 chromosome 14 open reading frame 177 86464 1 1 1 0 0 1 0 0 0 0 0.35 0.96 -6610 NT5C3 5'-nucleotidase, cytosolic III 233324 2 2 2 0 1 1 0 0 0 0 0.35 0.96 -6611 C12orf24 chromosome 12 open reading frame 24 157472 2 2 2 0 0 1 1 0 0 0 0.35 0.96 -6612 ARMC8 armadillo repeat containing 8 478016 6 5 6 2 5 0 1 0 0 0 0.35 0.96 -6613 KIAA0195 KIAA0195 930188 6 6 6 2 1 4 0 0 1 0 0.35 0.96 -6614 BEX1 brain expressed, X-linked 1 85568 1 1 1 0 0 0 1 0 0 0 0.35 0.96 -6615 SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9 639588 4 4 4 0 1 2 0 1 0 0 0.35 0.96 -6616 LDLRAD3 low density lipoprotein receptor class A domain containing 3 226688 3 3 3 1 2 0 1 0 0 0 0.35 0.96 -6617 EPCAM 201824 1 1 1 0 0 0 0 0 1 0 0.35 0.96 -6618 OR2W5 olfactory receptor, family 2, subfamily W, member 5 216608 2 2 2 0 1 0 1 0 0 0 0.35 0.96 -6619 PDCD1LG2 programmed cell death 1 ligand 2 189504 1 1 1 0 1 0 0 0 0 0 0.35 0.96 -6620 TXNRD1 thioredoxin reductase 1 425184 3 3 3 0 1 1 0 0 1 0 0.35 0.96 -6621 SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 215040 3 3 3 1 2 0 1 0 0 0 0.35 0.96 -6622 MPP1 membrane protein, palmitoylated 1, 55kDa 322944 3 3 3 1 1 1 1 0 0 0 0.35 0.96 -6623 TADA3 299040 3 3 3 0 1 0 1 0 1 0 0.35 0.96 -6624 CEP76 centrosomal protein 76kDa 452676 5 3 5 0 0 2 0 0 3 0 0.35 0.96 -6625 ProSAPiP1 314160 4 4 4 0 2 1 0 0 1 0 0.35 0.96 -6626 VAT1 vesicle amine transport protein 1 homolog (T. californica) 218680 2 2 2 1 1 0 1 0 0 0 0.35 0.96 -6627 PRSS38 224224 2 2 2 0 1 0 0 0 1 0 0.35 0.96 -6628 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 267204 3 3 3 1 2 0 0 0 1 0 0.35 0.96 -6629 SLC44A2 solute carrier family 44, member 2 485632 5 5 5 2 2 1 2 0 0 0 0.35 0.96 -6630 FBXO11 F-box protein 11 609280 5 4 4 1 3 2 0 0 0 0 0.35 0.96 -6631 IL6 interleukin 6 (interferon, beta 2) 147616 2 2 2 2 2 0 0 0 0 0 0.35 0.96 -6632 GMPR2 guanosine monophosphate reductase 2 254688 2 2 2 2 0 1 0 0 1 0 0.35 0.96 -6633 COX7A1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) 56800 1 1 1 0 1 0 0 0 0 0 0.35 0.96 -6634 NCBP2 nuclear cap binding protein subunit 2, 20kDa 109088 1 1 1 1 1 0 0 0 0 0 0.35 0.96 -6635 EGFLAM EGF-like, fibronectin type III and laminin G domains 700980 7 6 7 3 1 2 2 0 2 0 0.35 0.96 -6636 TCTN3 tectonic family member 3 301056 2 2 2 0 0 2 0 0 0 0 0.35 0.96 -6637 INTU inturned planar cell polarity effector homolog (Drosophila) 648032 6 6 6 2 1 3 2 0 0 0 0.35 0.96 -6638 TOR3A torsin family 3, member A 233716 3 3 3 1 2 0 0 0 1 0 0.35 0.96 -6639 C13orf31 chromosome 13 open reading frame 31 294112 2 2 2 0 0 1 0 0 1 0 0.35 0.96 -6640 FBP2 fructose-1,6-bisphosphatase 2 234752 3 3 3 1 1 2 0 0 0 0 0.35 0.96 -6641 ACTL8 actin-like 8 248416 3 3 3 1 2 0 0 1 0 0 0.35 0.96 -6642 OR9Q2 olfactory receptor, family 9, subfamily Q, member 2 212576 3 3 3 0 1 1 1 0 0 0 0.35 0.96 -6643 SLC10A6 solute carrier family 10 (sodium/bile acid cotransporter family), member 6 259392 2 2 2 0 0 1 1 0 0 0 0.35 0.96 -6644 TTC30B tetratricopeptide repeat domain 30B 425712 6 4 6 1 1 1 2 0 2 0 0.35 0.96 -6645 OBP2B odorant binding protein 2B 120288 1 1 1 0 0 1 0 0 0 0 0.35 0.96 -6646 ACSL5 acyl-CoA synthetase long-chain family member 5 516096 4 4 4 1 1 0 2 1 0 0 0.35 0.96 -6647 GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 480192 6 5 6 7 3 2 0 0 1 0 0.35 0.96 -6648 HABP2 hyaluronan binding protein 2 388640 3 3 3 2 0 2 0 0 1 0 0.35 0.96 -6649 REG3G regenerating islet-derived 3 gamma 122752 1 1 1 2 0 1 0 0 0 0 0.35 0.96 -6650 FBXO31 F-box protein 31 270536 4 4 4 1 3 0 1 0 0 0 0.35 0.96 -6651 IMMP1L IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 116704 1 1 1 0 0 0 1 0 0 0 0.35 0.96 -6652 RNF170 ring finger protein 170 179424 1 1 1 0 0 0 0 0 1 0 0.35 0.96 -6653 TDG thymine-DNA glycosylase 282884 3 3 3 0 0 2 1 0 0 0 0.35 0.96 -6654 IGDCC4 715576 5 5 5 2 2 2 0 0 1 0 0.35 0.96 -6655 COL15A1 collagen, type XV, alpha 1 970284 11 7 11 8 2 6 2 0 1 0 0.35 0.96 -6656 MTMR11 myotubularin related protein 11 452704 3 3 3 0 1 0 0 0 2 0 0.35 0.96 -6657 TLR7 toll-like receptor 7 707392 7 6 7 1 0 4 3 0 0 0 0.35 0.96 -6658 LONP2 lon peptidase 2, peroxisomal 568304 4 4 4 2 1 2 1 0 0 0 0.35 0.96 -6659 HEXB hexosaminidase B (beta polypeptide) 359856 3 3 3 1 1 1 1 0 0 0 0.35 0.96 -6660 ANKRD46 ankyrin repeat domain 46 156576 1 1 1 1 0 0 0 0 1 0 0.35 0.96 -6661 GPR21 G protein-coupled receptor 21 236096 4 3 3 0 2 1 1 0 0 0 0.36 0.96 -6662 MMP21 matrix metallopeptidase 21 285936 5 4 5 0 2 2 1 0 0 0 0.36 0.96 -6663 PCDHGC5 protocadherin gamma subfamily C, 5 640780 3 3 3 1 0 1 1 0 1 0 0.36 0.96 -6664 DNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 9 152320 3 2 3 0 1 1 1 0 0 0 0.36 0.96 -6665 AQP3 aquaporin 3 (Gill blood group) 199712 2 2 2 1 1 1 0 0 0 0 0.36 0.96 -6666 NKX6-1 NK6 homeobox 1 121616 2 2 2 0 0 1 0 0 1 0 0.36 0.96 -6667 GNA12 guanine nucleotide binding protein (G protein) alpha 12 221612 2 2 2 3 0 0 0 0 2 0 0.36 0.96 -6668 HEPACAM2 329728 3 3 3 1 0 1 2 0 0 0 0.36 0.96 -6669 TCFL5 transcription factor-like 5 (basic helix-loop-helix) 223524 3 3 3 1 1 1 1 0 0 0 0.36 0.96 -6670 LPP LIM domain containing preferred translocation partner in lipoma 418824 3 3 3 2 0 3 0 0 0 0 0.36 0.96 -6671 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 402976 3 3 3 2 0 3 0 0 0 0 0.36 0.96 -6672 C15orf48 chromosome 15 open reading frame 48 60032 1 1 1 0 0 1 0 0 0 0 0.36 0.96 -6673 USP11 ubiquitin specific peptidase 11 644160 8 7 7 1 3 3 1 0 1 0 0.36 0.96 -6674 PRSS23 protease, serine, 23 258860 3 3 3 0 2 0 0 0 1 0 0.36 0.96 -6675 GALNS galactosamine (N-acetyl)-6-sulfate sulfatase (Morquio syndrome, mucopolysaccharidosis type IVA) 308912 4 4 4 1 3 0 1 0 0 0 0.36 0.96 -6676 OR7D2 olfactory receptor, family 7, subfamily D, member 2 211232 3 2 3 0 1 2 0 0 0 0 0.36 0.96 -6677 STH saitohin 86996 1 1 1 0 0 1 0 0 0 0 0.36 0.96 -6678 C5orf4 chromosome 5 open reading frame 4 231616 3 3 2 0 2 1 0 0 0 0 0.36 0.96 -6679 CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 322784 2 2 2 0 0 0 2 0 0 0 0.36 0.96 -6680 CEP192 centrosomal protein 192kDa 1336832 10 8 10 3 3 1 2 0 2 2 0.36 0.96 -6681 ZNF654 zinc finger protein 654 380792 3 3 3 0 0 0 2 0 1 0 0.36 0.96 -6682 CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1 296520 2 2 2 1 1 1 0 0 0 0 0.36 0.96 -6683 SUMF1 sulfatase modifying factor 1 230668 2 2 2 0 0 2 0 0 0 0 0.36 0.96 -6684 EGR1 early growth response 1 353668 3 3 3 2 1 0 0 0 2 0 0.36 0.96 -6685 MYL10 117600 2 2 2 1 1 1 0 0 0 0 0.36 0.96 -6686 YLPM1 YLP motif containing 1 1416636 11 9 11 2 3 2 3 1 2 0 0.36 0.96 -6687 CAMKV CaM kinase-like vesicle-associated 345632 5 3 5 1 0 2 0 0 0 3 0.36 0.96 -6688 CCDC75 coiled-coil domain containing 75 109000 1 1 1 0 0 1 0 0 0 0 0.36 0.96 -6689 LTBP1 latent transforming growth factor beta binding protein 1 1106336 9 9 9 4 2 4 2 0 1 0 0.36 0.96 -6690 NPDC1 neural proliferation, differentiation and control, 1 132316 1 1 1 0 0 0 0 0 1 0 0.36 0.96 -6691 BZW1 basic leucine zipper and W2 domains 1 229520 1 1 1 0 0 0 0 0 1 0 0.36 0.96 -6692 TCP11 t-complex 11 homolog (mouse) 361984 3 3 3 0 1 2 0 0 0 0 0.36 0.96 -6693 ANXA13 annexin A13 251328 3 3 3 0 0 3 0 0 0 0 0.36 0.96 -6694 YIF1A Yip1 interacting factor homolog A (S. cerevisiae) 158480 1 1 1 1 0 0 0 0 1 0 0.36 0.96 -6695 ANKRD5 ankyrin repeat domain 5 530124 6 4 6 6 1 2 1 1 1 0 0.36 0.96 -6696 IDI1 isopentenyl-diphosphate delta isomerase 1 162736 1 1 1 1 0 0 0 0 1 0 0.36 0.96 -6697 FBXO3 F-box protein 3 329056 3 3 3 0 2 1 0 0 0 0 0.36 0.96 -6698 RRP8 308140 2 2 2 1 1 1 0 0 0 0 0.36 0.96 -6699 FBLN1 fibulin 1 541960 7 6 7 3 4 3 0 0 0 0 0.36 0.96 -6700 XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3 172840 1 1 1 0 0 0 0 0 1 0 0.36 0.96 -6701 MPP7 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 400720 3 3 3 1 0 1 2 0 0 0 0.36 0.96 -6702 UHMK1 U2AF homology motif (UHM) kinase 1 275128 3 3 3 0 2 1 0 0 0 0 0.36 0.96 -6703 MFSD4 major facilitator superfamily domain containing 4 334688 2 2 2 1 1 0 0 0 1 0 0.36 0.96 -6704 LHFP lipoma HMGIC fusion partner 137592 1 1 1 0 1 0 0 0 0 0 0.36 0.96 -6705 ATP6V1C1 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 268128 2 2 2 0 1 1 0 0 0 0 0.36 0.96 -6706 GRIN2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D 474884 5 5 5 4 3 0 2 0 0 0 0.36 0.96 -6707 PTPRD protein tyrosine phosphatase, receptor type, D 1316624 16 11 15 3 5 8 3 0 0 0 0.36 0.96 -6708 TSPO2 117600 1 1 1 0 1 0 0 0 0 0 0.36 0.96 -6709 LAG3 lymphocyte-activation gene 3 295904 3 3 3 0 2 1 0 0 0 0 0.36 0.96 -6710 DRD2 dopamine receptor D2 304640 5 4 5 0 3 2 0 0 0 0 0.36 0.96 -6711 SLC25A16 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 208160 2 2 2 0 0 1 0 0 1 0 0.36 0.96 -6712 ZSWIM1 zinc finger, SWIM-type containing 1 327488 3 3 3 1 0 2 1 0 0 0 0.36 0.96 -6713 CCNL1 cyclin L1 334400 3 3 3 1 1 0 1 0 1 0 0.36 0.96 -6714 CLEC10A C-type lectin domain family 10, member A 222208 2 2 2 0 1 1 0 0 0 0 0.36 0.96 -6715 SILV silver homolog (mouse) 454720 3 3 3 1 1 1 1 0 0 0 0.36 0.96 -6716 IRS1 insulin receptor substrate 1 759164 9 8 9 2 2 3 2 0 2 0 0.36 0.96 -6717 C2orf50 chromosome 2 open reading frame 50 101136 1 1 1 0 0 0 1 0 0 0 0.36 0.96 -6718 TMEM177 transmembrane protein 177 210560 3 3 3 0 0 2 1 0 0 0 0.36 0.96 -6719 TXLNA taxilin alpha 374368 4 4 4 1 3 0 1 0 0 0 0.36 0.96 -6720 FANCA Fanconi anemia, complementation group A 964908 7 7 7 1 4 1 2 0 0 0 0.36 0.96 -6721 SPNS3 spinster homolog 3 (Drosophila) 336308 3 3 3 1 1 1 0 0 1 0 0.36 0.96 -6722 SLC13A4 solute carrier family 13 (sodium/sulfate symporters), member 4 421672 5 5 5 1 4 0 1 0 0 0 0.36 0.96 -6723 C20orf30 chromosome 20 open reading frame 30 87360 1 1 1 0 1 0 0 0 0 0 0.36 0.96 -6724 NRF1 nuclear respiratory factor 1 347648 4 4 4 1 2 0 1 0 1 0 0.36 0.96 -6725 NSUN4 NOL1/NOP2/Sun domain family, member 4 263960 2 2 2 0 0 1 1 0 0 0 0.36 0.96 -6726 SPAG8 sperm associated antigen 8 388668 4 4 4 2 1 1 2 0 0 0 0.36 0.96 -6727 SLC16A1 solute carrier family 16, member 1 (monocarboxylic acid transporter 1) 340256 3 3 3 1 0 2 1 0 0 0 0.36 0.96 -6728 CCDC25 coiled-coil domain containing 25 144160 1 1 1 0 0 0 0 0 1 0 0.36 0.96 -6729 PTHLH parathyroid hormone-like hormone 118916 1 1 1 1 0 1 0 0 0 0 0.36 0.96 -6730 GABRR3 gamma-aminobutyric acid (GABA) receptor, rho 3 322424 2 2 2 0 1 0 1 0 0 0 0.36 0.96 -6731 SLC9A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 477744 5 4 5 2 2 3 0 0 0 0 0.36 0.96 -6732 CEACAM16 carcinoembryonic antigen-related cell adhesion molecule 16 244560 2 2 1 0 0 0 0 0 2 0 0.36 0.96 -6733 GBE1 glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV) 483264 5 5 5 1 2 1 2 0 0 0 0.36 0.96 -6734 SERPINA11 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 287840 4 3 4 0 0 2 1 0 1 0 0.36 0.96 -6735 FTCD formiminotransferase cyclodeaminase 201068 2 2 2 0 1 0 0 0 1 0 0.36 0.96 -6736 KLK13 kallikrein-related peptidase 13 183680 2 2 2 2 0 1 0 0 1 0 0.36 0.96 -6737 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 247744 2 2 2 0 0 2 0 0 0 0 0.36 0.96 -6738 TEKT5 tektin 5 332444 5 5 4 4 4 0 1 0 0 0 0.36 0.97 -6739 IL13RA1 interleukin 13 receptor, alpha 1 276864 2 2 2 0 0 1 1 0 0 0 0.36 0.97 -6740 USP7 ubiquitin specific peptidase 7 (herpes virus-associated) 750400 9 8 9 4 6 0 2 0 1 0 0.36 0.97 -6741 SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 742592 9 6 9 3 2 2 5 0 0 0 0.36 0.97 -6742 PTK7 PTK7 protein tyrosine kinase 7 723108 9 8 9 2 5 3 0 1 0 0 0.36 0.97 -6743 RAB5B RAB5B, member RAS oncogene family 149632 1 1 1 0 0 0 1 0 0 0 0.36 0.97 -6744 LHB luteinizing hormone beta polypeptide 95928 1 1 1 0 1 0 0 0 0 0 0.36 0.97 -6745 COX16 75488 1 1 1 0 0 0 1 0 0 0 0.36 0.97 -6746 PRRX1 paired related homeobox 1 181104 3 3 3 0 2 1 0 0 0 0 0.36 0.97 -6747 PEX19 peroxisomal biogenesis factor 19 208768 2 2 2 0 0 1 1 0 0 0 0.36 0.97 -6748 HBD hemoglobin, delta 102144 1 1 1 2 0 1 0 0 0 0 0.36 0.97 -6749 C13orf28 chromosome 13 open reading frame 28 137984 2 2 2 2 0 1 1 0 0 0 0.36 0.97 -6750 HNRNPD 210424 2 2 2 0 0 0 2 0 0 0 0.36 0.97 -6751 TMEM211 89152 1 1 1 0 1 0 0 0 0 0 0.36 0.97 -6752 UBXN2B 210560 2 2 2 0 1 0 1 0 0 0 0.36 0.97 -6753 GSTM5 glutathione S-transferase M5 154336 1 1 1 0 1 0 0 0 0 0 0.36 0.97 -6754 FAM90A1 family with sequence similarity 90, member A1 253652 3 3 3 2 2 1 0 0 0 0 0.36 0.97 -6755 HRH2 histamine receptor H2 242816 4 3 4 2 3 1 0 0 0 0 0.36 0.97 -6756 SPDYC speedy homolog C (Drosophila) 203840 2 2 2 0 0 2 0 0 0 0 0.36 0.97 -6757 MAGEA4 melanoma antigen family A, 4 209216 2 2 2 1 0 1 1 0 0 0 0.36 0.97 -6758 HOXA11 homeobox A11 167160 2 2 2 0 1 1 0 0 0 0 0.36 0.97 -6759 PTPLA protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A 142016 1 1 1 1 0 0 1 0 0 0 0.36 0.97 -6760 TM7SF4 transmembrane 7 superfamily member 4 319200 3 2 3 0 0 1 1 0 1 0 0.36 0.97 -6761 ARL4D ADP-ribosylation factor-like 4D 124124 1 1 1 0 0 0 0 1 0 0 0.36 0.97 -6762 HAVCR1 hepatitis A virus cellular receptor 1 252176 2 2 2 0 1 0 0 0 1 0 0.36 0.97 -6763 ACO1 aconitase 1, soluble 616000 5 4 5 2 0 2 2 0 1 0 0.36 0.97 -6764 TRIM4 tripartite motif-containing 4 285404 3 3 3 0 0 3 0 0 0 0 0.36 0.97 -6765 LDB2 LIM domain binding 2 258496 2 2 2 1 1 0 0 0 1 0 0.36 0.97 -6766 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 588208 5 5 5 2 4 0 0 0 1 0 0.36 0.97 -6767 PLAC8L1 PLAC8-like 1 123200 1 1 1 1 0 1 0 0 0 0 0.36 0.97 -6768 CNTF ciliary neurotrophic factor 136864 2 2 2 2 1 0 1 0 0 0 0.36 0.97 -6769 GALNT9 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 165144 2 2 2 0 2 0 0 0 0 0 0.36 0.97 -6770 TIMP4 TIMP metallopeptidase inhibitor 4 143668 2 2 2 0 1 0 1 0 0 0 0.36 0.97 -6771 C9orf95 chromosome 9 open reading frame 95 141568 1 1 1 1 0 1 0 0 0 0 0.36 0.97 -6772 MLLT11 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 62048 2 1 2 0 1 1 0 0 0 0 0.36 0.97 -6773 C6orf114 chromosome 6 open reading frame 114 75688 1 1 1 0 1 0 0 0 0 0 0.36 0.97 -6774 YIPF7 Yip1 domain family, member 7 191216 1 1 1 0 0 0 1 0 0 0 0.36 0.97 -6775 NUBP1 nucleotide binding protein 1 (MinD homolog, E. coli) 222576 2 2 2 1 1 1 0 0 0 0 0.36 0.97 -6776 NDNL2 necdin-like 2 177856 2 2 2 0 0 1 0 0 1 0 0.36 0.97 -6777 DNAI1 dynein, axonemal, intermediate chain 1 474312 6 4 6 2 3 1 2 0 0 0 0.36 0.97 -6778 SLFN11 schlafen family member 11 571508 8 6 8 6 5 2 1 0 0 0 0.36 0.97 -6779 RDH8 retinol dehydrogenase 8 (all-trans) 215040 3 3 3 0 2 0 1 0 0 0 0.36 0.97 -6780 NEFL neurofilament, light polypeptide 68kDa 336640 4 3 4 0 2 0 0 0 2 0 0.36 0.97 -6781 BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 267008 3 3 2 0 1 0 2 0 0 0 0.36 0.97 -6782 CHCHD6 coiled-coil-helix-coiled-coil-helix domain containing 6 150848 2 2 2 1 1 1 0 0 0 0 0.36 0.97 -6783 APOE apolipoprotein E 113820 1 1 1 0 0 0 0 1 0 0 0.36 0.97 -6784 NR0B1 nuclear receptor subfamily 0, group B, member 1 240232 3 3 3 1 2 1 0 0 0 0 0.36 0.97 -6785 ARSB arylsulfatase B 323764 5 4 5 0 3 1 1 0 0 0 0.36 0.97 -6786 STK16 serine/threonine kinase 16 211904 3 3 3 0 1 1 1 0 0 0 0.36 0.97 -6787 CLEC2D C-type lectin domain family 2, member D 152768 1 1 1 0 0 1 0 0 0 0 0.36 0.97 -6788 BCCIP BRCA2 and CDKN1A interacting protein 269920 2 2 2 1 0 0 1 0 1 0 0.36 0.97 -6789 BAT2 HLA-B associated transcript 2 1070412 11 9 11 2 6 3 0 0 2 0 0.36 0.97 -6790 IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase 934976 7 7 7 3 1 5 0 0 1 0 0.36 0.97 -6791 GH1 growth hormone 1 150976 2 2 2 1 2 0 0 0 0 0 0.36 0.97 -6792 TOP1MT topoisomerase (DNA) I, mitochondrial 402808 5 5 5 2 0 3 1 0 1 0 0.36 0.97 -6793 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 155488 1 1 1 0 0 0 0 0 1 0 0.37 0.97 -6794 C12orf40 chromosome 12 open reading frame 40 449708 4 3 4 0 0 0 4 0 0 0 0.37 0.97 -6795 MID1IP1 MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)) 124544 2 2 2 1 1 1 0 0 0 0 0.37 0.97 -6796 OIT3 oncoprotein induced transcript 3 374976 6 5 6 3 4 1 1 0 0 0 0.37 0.97 -6797 BAT4 HLA-B associated transcript 4 203980 2 2 2 0 1 0 1 0 0 0 0.37 0.97 -6798 PARVG parvin, gamma 232764 3 3 3 1 1 1 1 0 0 0 0.37 0.97 -6799 TARBP2 TAR (HIV-1) RNA binding protein 2 237416 3 3 3 1 2 1 0 0 0 0 0.37 0.97 -6800 CSDA cold shock domain protein A 206976 2 2 2 0 0 0 1 0 1 0 0.37 0.97 -6801 BICD1 bicaudal D homolog 1 (Drosophila) 664496 6 5 6 2 2 3 1 0 0 0 0.37 0.97 -6802 GMNN geminin, DNA replication inhibitor 146496 1 1 1 2 0 0 0 0 1 0 0.37 0.97 -6803 SOCS2 suppressor of cytokine signaling 2 117544 3 2 3 0 2 0 1 0 0 0 0.37 0.97 -6804 GTF2A1 general transcription factor IIA, 1, 19/37kDa 257056 2 2 2 0 0 1 1 0 0 0 0.37 0.97 -6805 AVL9 424452 3 3 3 0 0 2 0 0 1 0 0.37 0.97 -6806 PITPNB phosphatidylinositol transfer protein, beta 192640 2 2 2 2 0 0 1 0 1 0 0.37 0.97 -6807 KIAA0495 131160 1 1 1 0 0 1 0 0 0 0 0.37 0.97 -6808 IRF5 interferon regulatory factor 5 331156 3 3 3 2 0 2 0 0 1 0 0.37 0.97 -6809 OR5B2 olfactory receptor, family 5, subfamily B, member 2 209216 2 2 2 0 0 1 1 0 0 0 0.37 0.97 -6810 VPS24 vacuolar protein sorting 24 homolog (S. cerevisiae) 155232 2 2 2 0 1 1 0 0 0 0 0.37 0.97 -6811 EMX2 empty spiracles homeobox 2 101752 4 3 4 1 3 1 0 0 0 0 0.37 0.97 -6812 LRRC50 leucine rich repeat containing 50 467520 4 4 4 2 1 1 1 0 1 0 0.37 0.97 -6813 YBX2 Y box binding protein 2 187740 3 3 3 0 3 0 0 0 0 0 0.37 0.97 -6814 MID1 midline 1 (Opitz/BBB syndrome) 456824 4 4 4 2 1 2 0 0 1 0 0.37 0.97 -6815 TMPRSS13 transmembrane protease, serine 13 381188 4 4 4 2 2 1 1 0 0 0 0.37 0.97 -6816 HTATIP2 HIV-1 Tat interactive protein 2, 30kDa 170240 2 2 2 0 0 0 1 0 1 0 0.37 0.97 -6817 OR2AK2 olfactory receptor, family 2, subfamily AK, member 2 226688 2 2 2 0 0 1 1 0 0 0 0.37 0.97 -6818 TAS2R46 taste receptor, type 2, member 46 209216 2 2 2 1 0 2 0 0 0 0 0.37 0.97 -6819 ANKRD39 ankyrin repeat domain 39 108696 1 1 1 0 0 0 0 0 1 0 0.37 0.97 -6820 FOXN3 forkhead box N3 326928 4 3 3 0 1 1 0 0 2 0 0.37 0.97 -6821 TRPM7 transient receptor potential cation channel, subfamily M, member 7 1288896 15 9 13 1 4 4 4 0 3 0 0.37 0.97 -6822 HBP1 HMG-box transcription factor 1 355040 4 3 4 0 1 0 3 0 0 0 0.37 0.97 -6823 PCDHA5 protocadherin alpha 5 629636 8 8 7 0 7 1 0 0 0 0 0.37 0.97 -6824 PPM1F protein phosphatase 1F (PP2C domain containing) 260096 1 1 1 2 0 0 0 0 1 0 0.37 0.97 -6825 C5orf28 chromosome 5 open reading frame 28 146944 2 2 2 0 1 1 0 0 0 0 0.37 0.97 -6826 POU4F3 POU class 4 homeobox 3 229432 4 4 4 2 1 3 0 0 0 0 0.37 0.97 -6827 FABP7 fatty acid binding protein 7, brain 92960 1 1 1 0 1 0 0 0 0 0 0.37 0.97 -6828 MYCBP c-myc binding protein 62300 1 1 1 0 1 0 0 0 0 0 0.37 0.97 -6829 THOC7 THO complex 7 homolog (Drosophila) 139776 1 1 1 0 0 0 1 0 0 0 0.37 0.97 -6830 C8orf37 chromosome 8 open reading frame 37 145152 1 1 1 0 0 0 1 0 0 0 0.37 0.97 -6831 DERA 2-deoxyribose-5-phosphate aldolase homolog (C. elegans) 197728 2 2 2 0 1 0 0 0 1 0 0.37 0.97 -6832 SCYL2 SCY1-like 2 (S. cerevisiae) 640192 4 4 4 0 0 2 1 0 1 0 0.37 0.97 -6833 KPNA3 karyopherin alpha 3 (importin alpha 4) 366016 2 2 2 1 0 1 0 0 1 0 0.37 0.97 -6834 CGNL1 cingulin-like 1 891744 7 6 7 5 1 1 2 1 2 0 0.37 0.97 -6835 GRAMD1C GRAM domain containing 1C 457448 4 4 4 1 1 2 1 0 0 0 0.37 0.97 -6836 PSMC3IP PSMC3 interacting protein 153664 1 1 1 0 0 0 0 0 1 0 0.37 0.97 -6837 EIF3E eukaryotic translation initiation factor 3, subunit E 310000 2 2 2 0 0 1 1 0 0 0 0.37 0.97 -6838 IZUMO1 izumo sperm-egg fusion 1 243936 3 3 3 1 1 0 2 0 0 0 0.37 0.97 -6839 PPP6C protein phosphatase 6, catalytic subunit 214144 3 3 3 2 2 0 1 0 0 0 0.37 0.97 -6840 ADAM21 ADAM metallopeptidase domain 21 486752 7 4 7 4 0 4 2 0 1 0 0.37 0.97 -6841 FASTKD1 FAST kinase domains 1 582400 7 5 7 3 3 3 0 0 1 0 0.37 0.97 -6842 DPAGT1 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 282912 2 2 2 1 0 2 0 0 0 0 0.37 0.97 -6843 C9orf135 chromosome 9 open reading frame 135 159936 1 1 1 1 0 0 0 0 1 0 0.37 0.97 -6844 NUDCD1 NudC domain containing 1 401408 3 3 3 2 0 0 2 0 1 0 0.37 0.97 -6845 CDK20 221616 2 2 2 3 1 0 0 0 1 0 0.37 0.97 -6846 LDHA lactate dehydrogenase A 234528 2 2 2 1 1 0 1 0 0 0 0.37 0.97 -6847 CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 371168 3 3 3 1 1 1 1 0 0 0 0.37 0.97 -6848 VCX3B variable charge, X-linked 3B 103432 1 1 1 0 0 1 0 0 0 0 0.37 0.97 -6849 RAB43 RAB43, member RAS oncogene family 143640 2 2 2 0 1 0 0 0 1 0 0.37 0.97 -6850 COX4I2 cytochrome c oxidase subunit IV isoform 2 (lung) 119168 3 2 3 1 2 1 0 0 0 0 0.37 0.97 -6851 SLC5A8 solute carrier family 5 (iodide transporter), member 8 416640 7 4 7 2 2 1 3 0 1 0 0.37 0.97 -6852 RGL4 ral guanine nucleotide dissociation stimulator-like 4 295372 3 3 3 0 1 1 1 0 0 0 0.37 0.97 -6853 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 265568 2 2 2 0 0 1 1 0 0 0 0.37 0.97 -6854 ZNF41 zinc finger protein 41 517408 4 4 4 1 3 1 0 0 0 0 0.37 0.97 -6855 MCTS1 malignant T cell amplified sequence 1 127680 1 1 1 0 0 1 0 0 0 0 0.37 0.97 -6856 MEF2A myocyte enhancer factor 2A 328304 4 3 4 3 0 1 2 0 1 0 0.37 0.97 -6857 OR1E1 olfactory receptor, family 1, subfamily E, member 1 212576 2 2 2 0 0 2 0 0 0 0 0.37 0.97 -6858 FST follistatin 226456 3 3 3 1 0 2 1 0 0 0 0.37 0.97 -6859 SPTB spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) 1586148 13 13 12 7 11 1 0 0 1 0 0.37 0.97 -6860 PDE4B phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) 589792 5 4 4 3 2 1 1 0 1 0 0.37 0.97 -6861 RAB14 RAB14, member RAS oncogene family 151424 1 1 1 0 0 1 0 0 0 0 0.37 0.97 -6862 TDRD6 tudor domain containing 6 1307824 13 9 13 2 3 7 2 0 1 0 0.37 0.97 -6863 LYPLAL1 lysophospholipase-like 1 164416 1 1 1 0 0 0 1 0 0 0 0.37 0.97 -6864 FAM122B family with sequence similarity 122B 175392 1 1 1 0 0 0 0 0 1 0 0.37 0.97 -6865 CCDC136 coiled-coil domain containing 136 688900 6 5 6 1 3 0 1 1 1 0 0.37 0.97 -6866 ZKSCAN5 zinc finger with KRAB and SCAN domains 5 569856 5 4 5 1 1 1 1 1 1 0 0.37 0.97 -6867 SYK spleen tyrosine kinase 439040 3 3 3 0 0 1 0 0 2 0 0.37 0.97 -6868 TMPRSS15 702400 10 5 10 5 2 4 2 0 2 0 0.37 0.97 -6869 ZNF33B zinc finger protein 33B 527072 6 5 6 0 1 4 1 0 0 0 0.37 0.97 -6870 RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 337288 3 3 3 1 1 1 0 0 1 0 0.37 0.97 -6871 PRSS37 163072 2 2 2 0 0 2 0 0 0 0 0.37 0.97 -6872 SIGLEC14 sialic acid binding Ig-like lectin 14 208332 2 2 2 1 1 0 0 0 1 0 0.37 0.97 -6873 STK3 serine/threonine kinase 3 (STE20 homolog, yeast) 333760 3 3 3 1 1 2 0 0 0 0 0.37 0.97 -6874 CD33 CD33 molecule 251552 2 2 2 1 1 0 1 0 0 0 0.37 0.97 -6875 NUDT7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 164192 2 2 2 4 1 1 0 0 0 0 0.37 0.97 -6876 PFN4 profilin family, member 4 90944 1 1 1 0 0 1 0 0 0 0 0.37 0.97 -6877 CHRFAM7A CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion 100104 1 1 1 2 1 0 0 0 0 0 0.37 0.97 -6878 MTFMT mitochondrial methionyl-tRNA formyltransferase 222432 2 2 2 1 0 1 0 0 1 0 0.37 0.97 -6879 SPATA12 spermatogenesis associated 12 126224 1 1 1 1 0 0 1 0 0 0 0.37 0.97 -6880 CA13 carbonic anhydrase XIII 183008 1 1 1 0 0 0 0 0 1 0 0.37 0.97 -6881 PLEKHA5 pleckstrin homology domain containing, family A member 5 765800 4 4 4 2 2 0 0 0 2 0 0.37 0.97 -6882 S100PBP S100P binding protein 279328 2 2 2 0 0 0 1 0 1 0 0.37 0.97 -6883 HTR1F 5-hydroxytryptamine (serotonin) receptor 1F 247520 2 2 2 2 0 2 0 0 0 0 0.37 0.97 -6884 MTHFR 5,10-methylenetetrahydrofolate reductase (NADPH) 451360 7 5 7 1 2 3 2 0 0 0 0.37 0.97 -6885 UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) 532224 5 4 4 2 2 1 2 0 0 0 0.37 0.97 -6886 RCN1 reticulocalbin 1, EF-hand calcium binding domain 170688 2 2 2 2 1 1 0 0 0 0 0.37 0.97 -6887 DCPS decapping enzyme, scavenger 227500 3 3 3 1 3 0 0 0 0 0 0.37 0.97 -6888 C5orf22 chromosome 5 open reading frame 22 305676 2 2 2 0 1 0 1 0 0 0 0.37 0.97 -6889 SLAMF1 signaling lymphocytic activation molecule family member 1 232064 4 3 4 1 2 1 1 0 0 0 0.37 0.97 -6890 UHRF1BP1 UHRF1 (ICBP90) binding protein 1 976416 8 6 8 3 3 4 1 0 0 0 0.37 0.97 -6891 ZNF561 zinc finger protein 561 285824 3 2 3 0 0 3 0 0 0 0 0.37 0.97 -6892 PBX3 pre-B-cell leukemia homeobox 3 295960 3 2 3 1 1 0 0 0 2 0 0.37 0.97 -6893 PCDH11Y protocadherin 11 Y-linked 573580 5 4 5 0 3 2 0 0 0 0 0.37 0.97 -6894 ZNF160 zinc finger protein 160 553952 5 3 5 3 1 1 1 1 1 0 0.37 0.97 -6895 SERPINA10 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 302624 2 2 2 1 1 0 1 0 0 0 0.37 0.97 -6896 APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like) 506352 6 5 6 1 5 1 0 0 0 0 0.37 0.97 -6897 DUSP15 dual specificity phosphatase 15 102128 1 1 1 0 0 1 0 0 0 0 0.37 0.97 -6898 ZNF644 zinc finger protein 644 896896 7 5 7 3 1 2 1 0 1 2 0.37 0.97 -6899 TRIM35 tripartite motif-containing 35 285916 3 3 3 0 1 1 0 0 1 0 0.37 0.97 -6900 LCA5L Leber congenital amaurosis 5-like 454580 7 4 7 0 1 4 0 0 2 0 0.37 0.97 -6901 TBC1D5 TBC1 domain family, member 5 552832 4 4 4 3 1 1 1 0 1 0 0.37 0.97 -6902 CSTF3 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 504896 4 4 4 2 1 1 2 0 0 0 0.37 0.97 -6903 SUOX sulfite oxidase 369600 2 2 2 1 1 0 0 0 1 0 0.37 0.97 -6904 ZNF770 zinc finger protein 770 462560 7 4 6 0 4 0 3 0 0 0 0.37 0.97 -6905 SLC11A1 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 383712 3 3 3 0 1 1 0 1 0 0 0.37 0.97 -6906 KCNC3 potassium voltage-gated channel, Shaw-related subfamily, member 3 300384 4 4 4 0 3 0 0 0 1 0 0.37 0.97 -6907 WASF2 WAS protein family, member 2 342496 2 2 2 1 0 0 1 0 1 0 0.37 0.97 -6908 C2orf53 chromosome 2 open reading frame 53 254492 2 2 2 3 0 1 1 0 0 0 0.37 0.97 -6909 CD28 CD28 molecule 152096 2 2 2 2 2 0 0 0 0 0 0.37 0.97 -6910 OR6A2 olfactory receptor, family 6, subfamily A, member 2 221312 2 2 2 1 1 1 0 0 0 0 0.37 0.97 -6911 ACSBG1 acyl-CoA synthetase bubblegum family member 1 499660 7 5 7 4 3 2 1 0 1 0 0.37 0.97 -6912 SYNJ1 synaptojanin 1 1082000 11 8 10 2 2 3 3 0 3 0 0.37 0.97 -6913 TUBB2A tubulin, beta 2A 198464 3 3 3 1 2 0 1 0 0 0 0.37 0.97 -6914 CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 338016 4 3 4 1 3 1 0 0 0 0 0.37 0.97 -6915 WDR45 WD repeat domain 45 251272 2 2 2 0 0 0 1 1 0 0 0.37 0.97 -6916 STRAP serine/threonine kinase receptor associated protein 244832 2 2 2 0 1 1 0 0 0 0 0.37 0.97 -6917 HEXIM2 hexamthylene bis-acetamide inducible 2 138276 2 2 2 1 2 0 0 0 0 0 0.37 0.97 -6918 TMEM171 transmembrane protein 171 221088 2 2 2 0 1 1 0 0 0 0 0.37 0.97 -6919 OR11H1 olfactory receptor, family 11, subfamily H, member 1 211992 2 2 2 1 0 2 0 0 0 0 0.37 0.97 -6920 EOMES eomesodermin homolog (Xenopus laevis) 324720 4 3 4 2 1 1 1 0 1 0 0.37 0.97 -6921 ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 707112 6 5 6 2 2 0 2 0 2 0 0.37 0.97 -6922 CTSS cathepsin S 229376 2 2 2 1 1 1 0 0 0 0 0.37 0.97 -6923 DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13 1557248 10 9 10 4 3 5 1 0 1 0 0.37 0.97 -6924 SHKBP1 SH3KBP1 binding protein 1 475352 5 5 5 0 2 2 0 0 1 0 0.37 0.97 -6925 CCDC13 coiled-coil domain containing 13 482624 5 5 5 0 2 2 1 0 0 0 0.37 0.97 -6926 ACIN1 apoptotic chromatin condensation inducer 1 907968 7 7 7 2 4 2 1 0 0 0 0.37 0.97 -6927 CASZ1 castor zinc finger 1 964116 9 9 9 4 5 2 1 0 1 0 0.37 0.97 -6928 SNX17 sorting nexin 17 314944 3 3 3 1 0 2 0 0 1 0 0.37 0.97 -6929 APCS amyloid P component, serum 152320 1 1 1 2 0 1 0 0 0 0 0.37 0.97 -6930 RAD51C RAD51 homolog C (S. cerevisiae) 262136 2 2 2 0 1 1 0 0 0 0 0.37 0.97 -6931 CCDC111 coiled-coil domain containing 111 387744 3 3 3 0 0 2 1 0 0 0 0.37 0.97 -6932 REST RE1-silencing transcription factor 736680 5 5 5 1 1 2 1 0 1 0 0.37 0.97 -6933 CNTD1 cyclin N-terminal domain containing 1 228704 2 2 2 0 0 2 0 0 0 0 0.37 0.97 -6934 SH3PXD2A SH3 and PX domains 2A 719188 6 6 6 2 3 2 0 0 1 0 0.38 0.97 -6935 CLDND2 claudin domain containing 2 115556 2 2 2 0 1 1 0 0 0 0 0.38 0.97 -6936 C12orf39 chromosome 12 open reading frame 39 75704 1 1 1 0 0 1 0 0 0 0 0.38 0.97 -6937 LRIT1 leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 338660 4 4 4 0 0 3 0 0 1 0 0.38 0.97 -6938 EIF2B3 eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa 316512 2 2 2 1 0 1 1 0 0 0 0.38 0.97 -6939 S100A7L2 S100 calcium binding protein A7-like 2 72576 1 1 1 1 0 1 0 0 0 0 0.38 0.97 -6940 SIL1 SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae) 309984 3 3 3 1 2 0 0 0 1 0 0.38 0.97 -6941 MARK4 MAP/microtubule affinity-regulating kinase 4 402048 4 4 4 1 2 2 0 0 0 0 0.38 0.97 -6942 GFPT2 glutamine-fructose-6-phosphate transaminase 2 461112 4 4 4 5 3 0 0 1 0 0 0.38 0.97 -6943 OR5K2 olfactory receptor, family 5, subfamily K, member 2 213920 1 1 1 0 1 0 0 0 0 0 0.38 0.97 -6944 CRBN cereblon 307552 3 3 3 1 1 0 1 0 1 0 0.38 0.97 -6945 GBX2 gastrulation brain homeobox 2 144116 2 2 2 0 2 0 0 0 0 0 0.38 0.97 -6946 FGF3 fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog) 81704 1 1 1 0 0 0 1 0 0 0 0.38 0.97 -6947 SUSD3 sushi domain containing 3 155904 2 2 2 0 1 1 0 0 0 0 0.38 0.97 -6948 SNIP1 Smad nuclear interacting protein 1 255136 3 3 3 0 1 2 0 0 0 0 0.38 0.97 -6949 FAM200A 184256 1 1 1 0 0 0 1 0 0 0 0.38 0.97 -6950 EXOG 253344 3 3 3 0 1 2 0 0 0 0 0.38 0.97 -6951 ZNF85 zinc finger protein 85 404012 4 4 4 1 0 2 2 0 0 0 0.38 0.97 -6952 POLA1 polymerase (DNA directed), alpha 1 1013704 8 7 7 2 0 5 3 0 0 0 0.38 0.97 -6953 C16orf88 305228 2 2 2 0 1 0 0 0 1 0 0.38 0.97 -6954 EPS8 epidermal growth factor receptor pathway substrate 8 570976 5 4 5 1 0 3 1 0 1 0 0.38 0.97 -6955 TMEM219 165536 1 1 1 0 0 0 1 0 0 0 0.38 0.97 -6956 OR4B1 olfactory receptor, family 4, subfamily B, member 1 209216 2 2 2 1 0 1 1 0 0 0 0.38 0.97 -6957 C3orf63 chromosome 3 open reading frame 63 847168 9 6 9 2 1 1 4 0 3 0 0.38 0.97 -6958 PLS3 plastin 3 (T isoform) 437472 3 3 3 0 1 1 0 0 1 0 0.38 0.97 -6959 METTL12 162316 1 1 1 0 0 0 0 0 1 0 0.38 0.97 -6960 CCDC24 coiled-coil domain containing 24 194968 2 2 2 0 0 1 1 0 0 0 0.38 0.97 -6961 BBS2 Bardet-Biedl syndrome 2 500416 6 5 6 1 3 2 0 0 1 0 0.38 0.97 -6962 FER1L5 fer-1-like 5 (C. elegans) 540420 6 5 6 1 3 1 1 0 1 0 0.38 0.97 -6963 GLB1L2 galactosidase, beta 1-like 2 429120 5 5 5 0 3 2 0 0 0 0 0.38 0.97 -6964 GRAP2 GRB2-related adaptor protein 2 228704 5 3 4 0 1 4 0 0 0 0 0.38 0.97 -6965 KRT33B keratin 33B 278432 5 4 5 1 3 2 0 0 0 0 0.38 0.97 -6966 ZNF277 zinc finger protein 277 313824 2 2 2 0 0 1 1 0 0 0 0.38 0.97 -6967 OR10V1 olfactory receptor, family 10, subfamily V, member 1 209216 1 1 1 2 0 0 0 0 1 0 0.38 0.97 -6968 C9orf85 chromosome 9 open reading frame 85 109760 1 1 1 0 0 0 1 0 0 0 0.38 0.97 -6969 TMEM182 transmembrane protein 182 159040 1 1 1 1 1 0 0 0 0 0 0.38 0.97 -6970 TRIOBP TRIO and F-actin binding protein 1341792 13 10 12 2 4 4 3 0 2 0 0.38 0.97 -6971 FBXO16 F-box protein 16 204064 2 2 2 0 0 2 0 0 0 0 0.38 0.98 -6972 CXorf36 chromosome X open reading frame 36 277544 3 3 3 1 2 0 1 0 0 0 0.38 0.98 -6973 ETFDH electron-transferring-flavoprotein dehydrogenase 426944 3 3 2 1 1 1 0 1 0 0 0.38 0.98 -6974 KCTD6 potassium channel tetramerisation domain containing 6 161728 2 2 2 0 0 2 0 0 0 0 0.38 0.98 -6975 RND1 Rho family GTPase 1 161056 1 1 1 1 0 0 0 0 1 0 0.38 0.98 -6976 TMOD1 tropomodulin 1 249984 3 3 3 0 2 1 0 0 0 0 0.38 0.98 -6977 DENR density-regulated protein 112664 1 1 1 0 0 0 0 0 1 0 0.38 0.98 -6978 CLDN7 claudin 7 146048 2 2 2 0 0 1 1 0 0 0 0.38 0.98 -6979 TLR2 toll-like receptor 2 528416 6 4 6 0 0 1 4 0 1 0 0.38 0.98 -6980 ARRDC3 arrestin domain containing 3 286048 3 3 3 0 0 1 1 0 1 0 0.38 0.98 -6981 RPF1 243264 4 3 4 0 3 0 1 0 0 0 0.38 0.98 -6982 FAM169A 461664 4 4 4 1 2 1 1 0 0 0 0.38 0.98 -6983 FAF2 309568 3 3 3 0 1 1 1 0 0 0 0.38 0.98 -6984 NKTR natural killer-tumor recognition sequence 993468 6 5 6 0 1 1 2 0 2 0 0.38 0.98 -6985 DPPA3 developmental pluripotency associated 3 111104 1 1 1 0 0 1 0 0 0 0 0.38 0.98 -6986 ASAP1 782080 5 4 5 8 2 2 0 0 1 0 0.38 0.98 -6987 PCDHGA7 protocadherin gamma subfamily A, 7 629300 7 6 6 2 5 1 0 0 1 0 0.38 0.98 -6988 SFTA3 67424 1 1 1 0 0 1 0 0 0 0 0.38 0.98 -6989 FEZF2 FEZ family zinc finger 2 253544 3 3 3 5 3 0 0 0 0 0 0.38 0.98 -6990 COL21A1 collagen, type XXI, alpha 1 630384 10 6 10 6 2 6 1 0 1 0 0.38 0.98 -6991 UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) 258076 2 2 2 0 0 0 1 0 1 0 0.38 0.98 -6992 TMX1 196000 2 2 2 0 1 1 0 0 0 0 0.38 0.98 -6993 C6orf125 chromosome 6 open reading frame 125 88928 1 1 1 1 0 0 0 0 1 0 0.38 0.98 -6994 ACRBP acrosin binding protein 371128 6 5 6 2 2 2 2 0 0 0 0.38 0.98 -6995 CA3 carbonic anhydrase III, muscle specific 176496 2 2 2 0 2 0 0 0 0 0 0.38 0.98 -6996 IL17RD interleukin 17 receptor D 473960 5 5 5 2 2 1 2 0 0 0 0.38 0.98 -6997 C6orf118 chromosome 6 open reading frame 118 316832 3 3 3 4 0 2 1 0 0 0 0.38 0.98 -6998 FBXO45 F-box protein 45 138632 2 2 2 0 0 2 0 0 0 0 0.38 0.98 -6999 COG2 component of oligomeric golgi complex 2 512736 4 4 4 2 2 0 1 0 1 0 0.38 0.98 -7000 HNF4G hepatocyte nuclear factor 4, gamma 308672 4 3 4 1 2 2 0 0 0 0 0.38 0.98 -7001 VDAC3 voltage-dependent anion channel 3 198688 1 1 1 0 0 0 1 0 0 0 0.38 0.98 -7002 LIPK lipase, family member K 236608 1 1 1 2 0 0 0 0 1 0 0.38 0.98 -7003 TDO2 tryptophan 2,3-dioxygenase 284256 4 3 4 0 0 4 0 0 0 0 0.38 0.98 -7004 NR1D1 nuclear receptor subfamily 1, group D, member 1 403396 4 4 4 1 3 0 1 0 0 0 0.38 0.98 -7005 C18orf62 chromosome 18 open reading frame 62 71232 1 1 1 0 0 1 0 0 0 0 0.38 0.98 -7006 CRYBB3 crystallin, beta B3 146860 2 2 2 1 1 0 1 0 0 0 0.38 0.98 -7007 PLEKHA2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 287016 2 2 2 0 1 1 0 0 0 0 0.38 0.98 -7008 ZNF347 zinc finger protein 347 568736 6 4 6 0 0 3 2 0 1 0 0.38 0.98 -7009 SEMA6D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 747488 9 7 9 1 4 5 0 0 0 0 0.38 0.98 -7010 SCAF1 SR-related CTD-associated factor 1 558816 5 5 5 0 2 2 0 0 1 0 0.38 0.98 -7011 ERMAP erythroblast membrane-associated protein (Scianna blood group) 328424 3 3 3 0 0 3 0 0 0 0 0.38 0.98 -7012 APBA1 amyloid beta (A4) precursor protein-binding, family A, member 1 (X11) 525868 7 6 5 5 3 3 0 0 1 0 0.38 0.98 -7013 GDAP1L1 ganglioside-induced differentiation-associated protein 1-like 1 239896 3 3 3 1 2 0 1 0 0 0 0.38 0.98 -7014 MXRA7 matrix-remodelling associated 7 76160 1 1 1 1 1 0 0 0 0 0 0.38 0.98 -7015 ELF4 E74-like factor 4 (ets domain transcription factor) 453292 4 4 4 3 0 1 3 0 0 0 0.38 0.98 -7016 LINGO4 leucine rich repeat and Ig domain containing 4 392672 4 4 4 0 1 2 1 0 0 0 0.38 0.98 -7017 CDYL chromodomain protein, Y-like 366240 4 4 4 5 1 3 0 0 0 0 0.38 0.98 -7018 LARP1 La ribonucleoprotein domain family, member 1 702212 6 5 6 4 1 2 1 0 2 0 0.38 0.98 -7019 CREBL2 cAMP responsive element binding protein-like 2 84896 1 1 1 0 0 0 1 0 0 0 0.38 0.98 -7020 VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) 467040 3 3 3 2 0 0 1 0 2 0 0.38 0.98 -7021 C8orf86 153216 1 1 1 0 0 1 0 0 0 0 0.38 0.98 -7022 NFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 759584 5 4 5 2 1 1 2 0 1 0 0.38 0.98 -7023 PM20D2 peptidase M20 domain containing 2 221200 2 2 2 1 1 1 0 0 0 0 0.38 0.98 -7024 DNAJC25 169932 2 2 2 0 1 0 1 0 0 0 0.38 0.98 -7025 OR1A2 olfactory receptor, family 1, subfamily A, member 2 209216 2 2 2 0 0 1 1 0 0 0 0.38 0.98 -7026 ACR acrosin 229072 2 2 2 0 1 0 1 0 0 0 0.38 0.98 -7027 CLVS1 243040 2 2 2 1 1 1 0 0 0 0 0.38 0.98 -7028 ZMYND8 zinc finger, MYND-type containing 8 818020 8 8 8 3 2 3 2 1 0 0 0.38 0.98 -7029 CLTC clathrin, heavy chain (Hc) 1154944 9 8 9 0 1 3 3 0 2 0 0.38 0.98 -7030 C20orf132 chromosome 20 open reading frame 132 651584 6 5 6 0 0 3 1 0 2 0 0.38 0.98 -7031 C1orf187 chromosome 1 open reading frame 187 231336 3 3 3 1 1 1 1 0 0 0 0.38 0.98 -7032 NCAPH non-SMC condensin I complex, subunit H 496544 5 5 5 2 1 1 3 0 0 0 0.38 0.98 -7033 ATF7IP2 activating transcription factor 7 interacting protein 2 467936 3 3 3 3 0 1 2 0 0 0 0.38 0.98 -7034 TRIM23 tripartite motif-containing 23 411264 9 4 6 0 5 0 3 0 1 0 0.38 0.98 -7035 SH2D1B SH2 domain containing 1B 92960 1 1 1 0 0 1 0 0 0 0 0.38 0.98 -7036 CYBASC3 cytochrome b, ascorbate dependent 3 170016 2 2 2 1 1 0 1 0 0 0 0.38 0.98 -7037 SNAI2 snail homolog 2 (Drosophila) 183456 2 2 2 1 0 2 0 0 0 0 0.38 0.98 -7038 CMKLR1 chemokine-like receptor 1 251552 3 3 3 1 1 2 0 0 0 0 0.38 0.98 -7039 TRIM31 tripartite motif-containing 31 211540 1 1 1 1 0 0 0 0 1 0 0.38 0.98 -7040 DNAI2 dynein, axonemal, intermediate chain 2 415296 5 5 5 1 3 1 1 0 0 0 0.38 0.98 -7041 AWAT2 211272 3 2 3 0 0 1 1 0 1 0 0.38 0.98 -7042 NIT1 nitrilase 1 228256 2 2 2 1 0 2 0 0 0 0 0.38 0.98 -7043 OBP2A odorant binding protein 2A 109144 1 1 1 3 1 0 0 0 0 0 0.38 0.98 -7044 LACRT lacritin 97888 1 1 1 0 0 1 0 0 0 0 0.38 0.98 -7045 C9orf37 chromosome 9 open reading frame 37 94352 1 1 1 1 1 0 0 0 0 0 0.38 0.98 -7046 ASB17 ankyrin repeat and SOCS box-containing 17 201600 1 1 1 2 0 1 0 0 0 0 0.38 0.98 -7047 ACTA1 actin, alpha 1, skeletal muscle 257208 4 4 4 0 0 4 0 0 0 0 0.38 0.98 -7048 FAM167B 65380 1 1 1 0 1 0 0 0 0 0 0.38 0.98 -7049 RHO rhodopsin 239008 3 3 3 7 3 0 0 0 0 0 0.38 0.98 -7050 TOB1 transducer of ERBB2, 1 233408 2 2 2 0 0 0 1 0 1 0 0.38 0.98 -7051 C1orf89 chromosome 1 open reading frame 89 162680 2 2 2 0 2 0 0 0 0 0 0.38 0.98 -7052 TNFRSF10A tumor necrosis factor receptor superfamily, member 10a 297276 3 3 3 0 0 3 0 0 0 0 0.38 0.98 -7053 C9orf72 chromosome 9 open reading frame 72 333760 2 2 2 0 0 1 1 0 0 0 0.38 0.98 -7054 SIVA1 SIVA1, apoptosis-inducing factor 111468 1 1 1 0 0 0 0 0 1 0 0.38 0.98 -7055 NEK3 NIMA (never in mitosis gene a)-related kinase 3 341360 4 4 4 2 1 2 1 0 0 0 0.38 0.98 -7056 TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) 218400 3 3 3 1 2 0 1 0 0 0 0.38 0.98 -7057 C1orf96 chromosome 1 open reading frame 96 133056 1 1 1 3 0 0 0 1 0 0 0.38 0.98 -7058 PRICKLE2 prickle homolog 2 (Drosophila) 573272 6 6 6 3 1 3 2 0 0 0 0.38 0.98 -7059 RELT RELT tumor necrosis factor receptor 255736 2 2 2 1 1 1 0 0 0 0 0.38 0.98 -7060 MAGEB3 melanoma antigen family B, 3 234080 3 2 3 0 0 2 1 0 0 0 0.38 0.98 -7061 GLT25D2 glycosyltransferase 25 domain containing 2 398188 5 4 5 3 3 1 1 0 0 0 0.38 0.98 -7062 ACVR1 activin A receptor, type I 350784 4 3 3 0 2 1 1 0 0 0 0.38 0.98 -7063 PLEKHA1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 282016 2 2 2 1 1 1 0 0 0 0 0.38 0.98 -7064 AIMP2 210140 3 2 3 0 2 0 1 0 0 0 0.38 0.98 -7065 KDSR 3-ketodihydrosphingosine reductase 223328 2 2 2 0 1 0 0 0 1 0 0.38 0.98 -7066 GLIS1 GLIS family zinc finger 1 375648 3 3 3 1 1 0 0 1 1 0 0.38 0.98 -7067 THUMPD2 THUMP domain containing 2 318528 3 3 3 0 0 1 2 0 0 0 0.38 0.98 -7068 RPL19 ribosomal protein L19 133428 1 1 1 1 0 1 0 0 0 0 0.38 0.98 -7069 TMEM55B transmembrane protein 55B 160384 2 1 2 0 1 0 0 0 1 0 0.38 0.98 -7070 ST7L suppression of tumorigenicity 7 like 406140 3 3 3 0 2 0 0 0 1 0 0.38 0.98 -7071 CA5A carbonic anhydrase VA, mitochondrial 203200 2 2 2 2 0 1 0 0 1 0 0.38 0.98 -7072 LRRC1 leucine rich repeat containing 1 365344 4 3 4 1 1 1 1 0 1 0 0.38 0.98 -7073 GAPT 107072 1 1 1 0 0 0 0 0 1 0 0.38 0.98 -7074 C5orf40 chromosome 5 open reading frame 40 152096 1 1 1 1 0 0 0 0 1 0 0.38 0.98 -7075 SHMT1 serine hydroxymethyltransferase 1 (soluble) 335104 2 2 2 0 0 1 0 0 1 0 0.38 0.98 -7076 PEX5L peroxisomal biogenesis factor 5-like 434784 4 4 4 2 2 2 0 0 0 0 0.38 0.98 -7077 BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 539644 8 7 8 1 6 0 1 0 1 0 0.38 0.98 -7078 MCFD2 multiple coagulation factor deficiency 2 101472 1 1 1 0 0 1 0 0 0 0 0.38 0.98 -7079 CCDC59 coiled-coil domain containing 59 166208 2 2 2 0 0 2 0 0 0 0 0.38 0.98 -7080 HSF2 heat shock transcription factor 2 372512 3 3 3 1 1 1 1 0 0 0 0.38 0.98 -7081 GPATCH1 G patch domain containing 1 628460 5 5 5 3 0 3 1 0 1 0 0.39 0.98 -7082 PPFIBP2 PTPRF interacting protein, binding protein 2 (liprin beta 2) 604512 5 4 5 3 1 3 0 0 1 0 0.39 0.98 -7083 SLC44A4 solute carrier family 44, member 4 401940 4 4 4 1 0 0 3 0 1 0 0.39 0.98 -7084 SIX6 SIX homeobox 6 153244 3 3 3 0 2 1 0 0 0 0 0.39 0.98 -7085 BAIAP2 BAI1-associated protein 2 328136 2 2 2 2 0 0 1 0 1 0 0.39 0.98 -7086 TEF thyrotrophic embryonic factor 167860 2 2 2 0 1 1 0 0 0 0 0.39 0.98 -7087 CCDC106 coiled-coil domain containing 106 185276 3 3 3 0 3 0 0 0 0 0 0.39 0.98 -7088 ESD esterase D/formylglutathione hydrolase 197344 1 1 1 0 0 1 0 0 0 0 0.39 0.98 -7089 MRPL9 mitochondrial ribosomal protein L9 176936 2 2 2 0 1 1 0 0 0 0 0.39 0.98 -7090 LHFPL2 lipoma HMGIC fusion partner-like 2 150304 2 2 2 1 1 1 0 0 0 0 0.39 0.98 -7091 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 324608 3 3 3 4 1 2 0 0 0 0 0.39 0.98 -7092 FBXW10 F-box and WD repeat domain containing 10 687400 6 6 6 1 2 3 1 0 0 0 0.39 0.98 -7093 GPR64 G protein-coupled receptor 64 708288 6 5 6 3 1 2 2 0 1 0 0.39 0.98 -7094 TEAD2 TEA domain family member 2 310156 4 3 4 1 0 1 2 0 1 0 0.39 0.98 -7095 RCAN1 regulator of calcineurin 1 136640 1 1 1 0 0 0 1 0 0 0 0.39 0.98 -7096 OR4A47 olfactory receptor, family 4, subfamily A, member 47 209216 2 2 2 0 0 0 2 0 0 0 0.39 0.98 -7097 ASCL3 achaete-scute complex homolog 3 (Drosophila) 123200 2 2 2 0 2 0 0 0 0 0 0.39 0.98 -7098 SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 512064 4 4 4 0 1 2 0 0 1 0 0.39 0.98 -7099 TAPT1 transmembrane anterior posterior transformation 1 299808 2 2 2 0 0 1 1 0 0 0 0.39 0.98 -7100 CDCA5 cell division cycle associated 5 171192 1 1 1 0 0 0 0 0 1 0 0.39 0.98 -7101 DBF4 DBF4 homolog (S. cerevisiae) 464268 5 3 5 1 1 3 0 0 1 0 0.39 0.98 -7102 HSPB8 heat shock 22kDa protein 8 135072 1 1 1 0 1 0 0 0 0 0 0.39 0.98 -7103 C7orf42 chromosome 7 open reading frame 42 217056 3 3 3 1 2 1 0 0 0 0 0.39 0.98 -7104 OR2C3 olfactory receptor, family 2, subfamily C, member 3 216608 2 2 2 0 0 2 0 0 0 0 0.39 0.98 -7105 GBP2 guanylate binding protein 2, interferon-inducible 406784 3 3 3 1 1 0 1 0 1 0 0.39 0.98 -7106 ATP6V1C2 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 299264 2 2 2 2 0 0 2 0 0 0 0.39 0.98 -7107 CYBB cytochrome b-245, beta polypeptide (chronic granulomatous disease) 394136 2 2 2 1 1 0 0 0 1 0 0.39 0.98 -7108 ARHGAP18 Rho GTPase activating protein 18 459648 4 4 4 0 1 1 2 0 0 0 0.39 0.98 -7109 AHR aryl hydrocarbon receptor 575512 6 5 6 2 3 2 1 0 0 0 0.39 0.98 -7110 RABGAP1 RAB GTPase activating protein 1 741440 7 6 7 2 3 3 1 0 0 0 0.39 0.98 -7111 DBR1 debranching enzyme homolog 1 (S. cerevisiae) 369544 3 3 3 1 0 3 0 0 0 0 0.39 0.98 -7112 UGT2B11 UDP glucuronosyltransferase 2 family, polypeptide B11 361536 6 3 6 3 0 4 1 0 1 0 0.39 0.98 -7113 SFRS4 splicing factor, arginine/serine-rich 4 337260 2 2 2 0 0 0 0 0 2 0 0.39 0.98 -7114 SEZ6L2 seizure related 6 homolog (mouse)-like 2 605436 8 7 8 3 6 1 0 1 0 0 0.39 0.98 -7115 C1orf135 chromosome 1 open reading frame 135 232112 2 2 2 0 0 2 0 0 0 0 0.39 0.98 -7116 C16orf3 chromosome 16 open reading frame 3 63428 1 1 1 0 1 0 0 0 0 0 0.39 0.98 -7117 BRPF3 bromodomain and PHD finger containing, 3 798116 5 5 5 3 2 2 1 0 0 0 0.39 0.98 -7118 IL17F interleukin 17F 112896 1 1 1 1 0 0 1 0 0 0 0.39 0.98 -7119 PSMD6 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 260292 3 3 3 2 1 1 0 1 0 0 0.39 0.98 -7120 HINT2 histidine triad nucleotide binding protein 2 95648 1 1 1 0 0 1 0 0 0 0 0.39 0.98 -7121 AAAS achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A) 381920 3 3 3 0 1 1 0 0 1 0 0.39 0.98 -7122 PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 161728 2 2 2 0 1 1 0 0 0 0 0.39 0.98 -7123 GPRASP2 G protein-coupled receptor associated sorting protein 2 564704 5 3 5 1 1 0 1 0 1 2 0.39 0.98 -7124 PTPN2 protein tyrosine phosphatase, non-receptor type 2 287028 2 2 2 0 0 1 0 0 1 0 0.39 0.98 -7125 SH3TC2 SH3 domain and tetratricopeptide repeats 2 881440 7 6 6 2 4 3 0 0 0 0 0.39 0.98 -7126 NDRG4 NDRG family member 4 237212 2 2 2 0 1 0 0 0 1 0 0.39 0.98 -7127 MAL mal, T-cell differentiation protein 99048 1 1 1 1 1 0 0 0 0 0 0.39 0.98 -7128 TMLHE trimethyllysine hydroxylase, epsilon 239468 3 2 3 1 1 2 0 0 0 0 0.39 0.98 -7129 DTX1 deltex homolog 1 (Drosophila) 305508 4 4 4 3 2 1 1 0 0 0 0.39 0.98 -7130 MED12 mediator complex subunit 12 1421924 11 11 11 4 6 4 0 0 1 0 0.39 0.98 -7131 PAGE1 P antigen family, member 1 (prostate associated) 94832 1 1 1 2 0 1 0 0 0 0 0.39 0.98 -7132 PRKCDBP protein kinase C, delta binding protein 121464 3 3 3 0 2 1 0 0 0 0 0.39 0.98 -7133 CASP4 caspase 4, apoptosis-related cysteine peptidase 261184 3 2 3 2 0 3 0 0 0 0 0.39 0.98 -7134 TRH thyrotropin-releasing hormone 159712 2 2 2 0 1 1 0 0 0 0 0.39 0.98 -7135 HIST1H2AA histone cluster 1, H2aa 89600 2 2 2 0 2 0 0 0 0 0 0.39 0.98 -7136 CFDP1 craniofacial development protein 1 207872 2 2 2 0 0 1 1 0 0 0 0.39 0.98 -7137 LGI2 leucine-rich repeat LGI family, member 2 333632 4 4 3 2 2 1 0 1 0 0 0.39 0.98 -7138 FAM65B 407232 4 4 4 1 1 2 1 0 0 0 0.39 0.98 -7139 MED4 mediator complex subunit 4 188384 2 2 2 0 0 2 0 0 0 0 0.39 0.98 -7140 C9orf100 chromosome 9 open reading frame 100 209616 2 2 2 0 0 1 1 0 0 0 0.39 0.98 -7141 LPAR4 lysophosphatidic acid receptor 4 250208 5 3 4 0 2 2 1 0 0 0 0.39 0.98 -7142 DCAF8L1 404768 4 4 4 3 0 3 1 0 0 0 0.39 0.98 -7143 RGS1 regulator of G-protein signaling 1 145600 1 1 1 0 0 1 0 0 0 0 0.39 0.98 -7144 SLC15A4 solute carrier family 15, member 4 278264 3 3 3 1 2 0 1 0 0 0 0.39 0.98 -7145 VPS37C vacuolar protein sorting 37 homolog C (S. cerevisiae) 198572 3 3 3 0 1 0 2 0 0 0 0.39 0.98 -7146 FAM81B family with sequence similarity 81, member B 313376 3 2 3 3 0 1 0 0 2 0 0.39 0.98 -7147 C7orf34 chromosome 7 open reading frame 34 86688 1 1 1 0 0 0 1 0 0 0 0.39 0.98 -7148 C3orf35 chromosome 3 open reading frame 35 117372 1 1 1 0 0 0 0 0 1 0 0.39 0.98 -7149 BTN3A2 butyrophilin, subfamily 3, member A2 231392 3 3 3 0 2 0 1 0 0 0 0.39 0.98 -7150 PCGF3 polycomb group ring finger 3 157816 2 1 2 0 1 0 0 0 1 0 0.39 0.98 -7151 KBTBD12 423808 5 4 5 2 0 3 1 0 1 0 0.39 0.98 -7152 PHF11 PHD finger protein 11 210112 2 2 2 0 1 0 1 0 0 0 0.39 0.98 -7153 SYDE2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) 721980 7 6 7 1 3 1 3 0 0 0 0.39 0.98 -7154 TRIM62 tripartite motif-containing 62 274708 4 4 4 0 3 0 1 0 0 0 0.39 0.98 -7155 OR51E1 olfactory receptor, family 51, subfamily E, member 1 215264 2 2 2 0 1 1 0 0 0 0 0.39 0.98 -7156 PANX1 pannexin 1 291424 2 2 2 0 0 1 0 0 1 0 0.39 0.98 -7157 SOX3 SRY (sex determining region Y)-box 3 108952 2 2 2 0 2 0 0 0 0 0 0.39 0.98 -7158 CCDC159 159384 2 1 2 1 1 0 1 0 0 0 0.39 0.98 -7159 GUCY2D guanylate cyclase 2D, membrane (retina-specific) 595240 8 6 8 2 5 2 1 0 0 0 0.39 0.98 -7160 EPHB2 EPH receptor B2 662116 8 7 7 2 6 2 0 0 0 0 0.39 0.98 -7161 SDC3 syndecan 3 270368 3 3 3 2 2 0 0 0 1 0 0.39 0.98 -7162 NPTXR neuronal pentraxin receptor 191912 2 2 2 1 1 1 0 0 0 0 0.39 0.98 -7163 C20orf196 chromosome 20 open reading frame 196 140224 1 1 1 1 0 0 0 1 0 0 0.39 0.98 -7164 LRRC66 595616 6 5 6 2 1 2 2 1 0 0 0.39 0.98 -7165 VN1R5 vomeronasal 1 receptor 5 241472 2 2 2 0 0 1 1 0 0 0 0.39 0.98 -7166 MTM1 myotubularin 1 418432 4 4 4 0 1 2 1 0 0 0 0.39 0.98 -7167 OXNAD1 oxidoreductase NAD-binding domain containing 1 216608 2 2 2 0 1 0 1 0 0 0 0.39 0.98 -7168 ISLR immunoglobulin superfamily containing leucine-rich repeat 286076 5 4 5 1 4 1 0 0 0 0 0.39 0.98 -7169 OCIAD1 OCIA domain containing 1 177408 2 2 2 0 0 2 0 0 0 0 0.39 0.98 -7170 FBXL12 F-box and leucine-rich repeat protein 12 170488 2 2 2 0 0 1 0 0 1 0 0.39 0.98 -7171 CCNE1 cyclin E1 275920 3 3 3 1 2 0 1 0 0 0 0.39 0.98 -7172 CHD9 chromodomain helicase DNA binding protein 9 1889316 18 11 18 2 1 10 5 0 2 0 0.39 0.98 -7173 B3GALT5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 209888 4 3 4 1 2 1 1 0 0 0 0.39 0.98 -7174 ACSM2B acyl-CoA synthetase medium-chain family member 2B 400064 3 3 3 2 1 2 0 0 0 0 0.39 0.98 -7175 CLCN2 chloride channel 2 597660 4 4 4 1 2 0 2 0 0 0 0.39 0.98 -7176 ZNF572 zinc finger protein 572 357952 3 3 3 2 0 3 0 0 0 0 0.39 0.98 -7177 GCM2 glial cells missing homolog 2 (Drosophila) 345184 4 4 4 3 1 3 0 0 0 0 0.39 0.98 -7178 DCAF6 609952 7 5 7 0 3 0 1 0 3 0 0.39 0.98 -7179 CLTA clathrin, light chain (Lca) 150080 2 2 2 0 0 1 1 0 0 0 0.39 0.98 -7180 CCL15 chemokine (C-C motif) ligand 15 80192 1 1 1 2 1 0 0 0 0 0 0.39 0.98 -7181 CCDC19 coiled-coil domain containing 19 381696 5 4 5 2 3 2 0 0 0 0 0.39 0.98 -7182 FAM135A family with sequence similarity 135, member A 915936 6 6 6 1 1 3 1 1 0 0 0.39 0.98 -7183 DTX4 deltex 4 homolog (Drosophila) 378456 3 3 3 0 1 1 0 0 1 0 0.39 0.98 -7184 RPL10 ribosomal protein L10 147588 1 1 1 0 0 0 1 0 0 0 0.39 0.98 -7185 CCIN calicin 396116 4 4 4 1 3 1 0 0 0 0 0.39 0.98 -7186 MIPEP mitochondrial intermediate peptidase 453600 5 4 5 0 2 1 0 1 1 0 0.39 0.98 -7187 CLRN2 clarin 2 159264 2 2 2 1 0 0 1 0 1 0 0.39 0.98 -7188 KIAA0907 KIAA0907 425824 3 3 3 2 0 1 1 0 1 0 0.39 0.98 -7189 ECT2L epithelial cell transforming sequence 2 oncogene-like 626080 5 4 5 2 0 2 1 0 2 0 0.39 0.98 -7190 PTOV1 prostate tumor overexpressed gene 1 248248 2 2 2 0 1 0 0 0 1 0 0.39 0.98 -7191 CLPTM1 cleft lip and palate associated transmembrane protein 1 445676 4 4 4 0 1 2 0 0 1 0 0.39 0.98 -7192 AGBL2 ATP/GTP binding protein-like 2 596512 6 5 6 2 2 2 1 0 1 0 0.39 0.98 -7193 CLSTN1 calsyntenin 1 655648 7 7 7 1 3 2 0 1 1 0 0.39 0.98 -7194 NEUROG3 neurogenin 3 106848 2 2 2 0 2 0 0 0 0 0 0.39 0.98 -7195 RAMP1 receptor (G protein-coupled) activity modifying protein 1 90272 1 1 1 0 0 1 0 0 0 0 0.39 0.98 -7196 RB1CC1 RB1-inducible coiled-coil 1 1091552 6 5 6 2 1 1 2 0 2 0 0.39 0.98 -7197 ADORA2A adenosine A2a receptor 255976 5 4 5 2 3 2 0 0 0 0 0.39 0.98 -7198 VPS37B vacuolar protein sorting 37 homolog B (S. cerevisiae) 170912 1 1 1 0 0 0 0 0 1 0 0.39 0.98 -7199 RAB37 RAB37, member RAS oncogene family 197932 2 2 2 0 1 1 0 0 0 0 0.39 0.98 -7200 LSM11 LSM11, U7 small nuclear RNA associated 164668 2 2 2 0 2 0 0 0 0 0 0.39 0.98 -7201 SLC39A5 solute carrier family 39 (metal ion transporter), member 5 362936 4 4 4 1 3 0 1 0 0 0 0.39 0.98 -7202 SDCCAG3 serologically defined colon cancer antigen 3 263844 1 1 1 0 0 0 0 0 1 0 0.39 0.98 -7203 TSPYL6 TSPY-like 6 277088 3 3 3 2 1 2 0 0 0 0 0.39 0.98 -7204 GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 223328 2 2 2 0 0 1 0 1 0 0 0.39 0.98 -7205 HIST1H2BH histone cluster 1, H2bh 86240 1 1 1 0 1 0 0 0 0 0 0.39 0.98 -7206 NEO1 neogenin homolog 1 (chicken) 978432 6 5 6 3 1 2 1 0 2 0 0.39 0.98 -7207 PCDHB10 protocadherin beta 10 493304 8 6 8 6 5 2 1 0 0 0 0.39 0.98 -7208 HORMAD1 HORMA domain containing 1 277984 3 3 3 0 2 1 0 0 0 0 0.39 0.98 -7209 FAM123C family with sequence similarity 123C 472188 3 3 3 2 1 0 0 0 2 0 0.39 0.98 -7210 LECT1 leukocyte cell derived chemotaxin 1 229796 2 2 2 0 0 1 0 0 1 0 0.39 0.98 -7211 ZNF772 zinc finger protein 772 333760 3 3 3 1 2 1 0 0 0 0 0.39 0.98 -7212 NOL9 nucleolar protein 9 393568 2 2 2 0 0 1 1 0 0 0 0.39 0.98 -7213 IFT57 intraflagellar transport 57 homolog (Chlamydomonas) 298732 2 2 2 0 1 0 0 0 1 0 0.39 0.98 -7214 CRYAB crystallin, alpha B 116336 1 1 1 0 1 0 0 0 0 0 0.39 0.98 -7215 CCDC113 coiled-coil domain containing 113 247800 4 3 4 1 4 0 0 0 0 0 0.39 0.98 -7216 AMACR alpha-methylacyl-CoA racemase 301764 4 3 4 1 1 3 0 0 0 0 0.39 0.98 -7217 GATA2 GATA binding protein 2 288372 3 3 3 0 1 1 0 0 1 0 0.39 0.98 -7218 GPD2 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 503552 4 4 4 2 0 3 1 0 0 0 0.39 0.98 -7219 UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 163296 2 2 2 0 1 1 0 0 0 0 0.39 0.98 -7220 KIAA1407 KIAA1407 644896 5 5 5 2 1 2 1 0 1 0 0.39 0.98 -7221 MPEG1 482720 4 3 4 1 2 1 0 0 1 0 0.39 0.98 -7222 COMMD1 copper metabolism (Murr1) domain containing 1 128184 1 1 1 0 1 0 0 0 0 0 0.39 0.98 -7223 NUP98 nucleoporin 98kDa 1255072 11 9 11 2 1 7 2 0 1 0 0.39 0.98 -7224 ZNF302 zinc finger protein 302 272384 2 2 2 0 1 0 0 0 1 0 0.39 0.98 -7225 ARPC5 actin related protein 2/3 complex, subunit 5, 16kDa 105728 1 1 1 0 0 0 1 0 0 0 0.39 0.98 -7226 CASP2 caspase 2, apoptosis-related cysteine peptidase (neural precursor cell expressed, developmentally down-regulated 2) 314188 4 4 4 1 3 0 1 0 0 0 0.39 0.98 -7227 NEK11 NIMA (never in mitosis gene a)- related kinase 11 452480 3 3 3 1 0 0 2 0 1 0 0.39 0.98 -7228 CCDC127 coiled-coil domain containing 127 176848 2 2 2 0 0 0 2 0 0 0 0.39 0.99 -7229 SLC27A2 solute carrier family 27 (fatty acid transporter), member 2 424368 3 3 3 0 0 1 1 0 1 0 0.40 0.99 -7230 ZDHHC6 zinc finger, DHHC-type containing 6 279280 2 2 2 0 0 2 0 0 0 0 0.40 0.99 -7231 MAGEA8 melanoma antigen family A, 8 212324 2 2 2 0 1 1 0 0 0 0 0.40 0.99 -7232 CCNB1 cyclin B1 299712 2 2 2 0 1 1 0 0 0 0 0.40 0.99 -7233 TNFSF8 tumor necrosis factor (ligand) superfamily, member 8 161504 1 1 1 1 0 1 0 0 0 0 0.40 0.99 -7234 COL8A2 collagen, type VIII, alpha 2 273868 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7235 KIAA0895 356384 6 4 6 0 2 3 1 0 0 0 0.40 0.99 -7236 KCNK1 potassium channel, subfamily K, member 1 229152 2 2 2 0 0 2 0 0 0 0 0.40 0.99 -7237 HFE2 hemochromatosis type 2 (juvenile) 288960 3 3 3 0 0 3 0 0 0 0 0.40 0.99 -7238 PLA2G4D phospholipase A2, group IVD (cytosolic) 540280 4 4 4 0 1 1 2 0 0 0 0.40 0.99 -7239 DAOA D-amino acid oxidase activator 107952 3 1 3 1 0 1 2 0 0 0 0.40 0.99 -7240 KLHL15 kelch-like 15 (Drosophila) 408216 3 3 3 1 0 1 2 0 0 0 0.40 0.99 -7241 STRADA 314048 2 2 2 1 0 0 2 0 0 0 0.40 0.99 -7242 CXXC4 CXXC finger 4 134428 1 1 1 0 0 0 1 0 0 0 0.40 0.99 -7243 GPR148 G protein-coupled receptor 148 233072 2 2 2 1 0 1 1 0 0 0 0.40 0.99 -7244 MASP2 mannan-binding lectin serine peptidase 2 436252 4 4 4 2 0 2 2 0 0 0 0.40 0.99 -7245 IFIT5 interferon-induced protein with tetratricopeptide repeats 5 326368 3 3 3 1 1 1 1 0 0 0 0.40 0.99 -7246 OR11H12 olfactory receptor, family 11, subfamily H, member 12 220640 1 1 1 0 0 1 0 0 0 0 0.40 0.99 -7247 C3orf22 chromosome 3 open reading frame 22 98112 1 1 1 1 1 0 0 0 0 0 0.40 0.99 -7248 OR5T1 olfactory receptor, family 5, subfamily T, member 1 220640 1 1 1 1 0 0 1 0 0 0 0.40 0.99 -7249 IKZF3 IKAROS family zinc finger 3 (Aiolos) 349888 3 3 3 1 2 0 1 0 0 0 0.40 0.99 -7250 NDUFB1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa 71064 1 1 1 0 1 0 0 0 0 0 0.40 0.99 -7251 TXLNG 340704 4 4 4 0 2 0 2 0 0 0 0.40 0.99 -7252 GZMM granzyme M (lymphocyte met-ase 1) 131432 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7253 DNAJB11 DnaJ (Hsp40) homolog, subfamily B, member 11 250208 2 2 2 0 1 1 0 0 0 0 0.40 0.99 -7254 UNC50 unc-50 homolog (C. elegans) 179200 1 1 1 1 0 0 0 0 1 0 0.40 0.99 -7255 NFIC nuclear factor I/C (CCAAT-binding transcription factor) 299044 4 4 4 0 2 1 1 0 0 0 0.40 0.99 -7256 PPA1 pyrophosphatase (inorganic) 1 189504 2 2 2 0 1 0 1 0 0 0 0.40 0.99 -7257 GSTM2 glutathione S-transferase M2 (muscle) 157248 2 2 2 0 0 2 0 0 0 0 0.40 0.99 -7258 MED27 mediator complex subunit 27 214928 2 2 2 1 0 1 0 0 1 0 0.40 0.99 -7259 PWP2 PWP2 periodic tryptophan protein homolog (yeast) 602264 5 5 5 1 3 1 1 0 0 0 0.40 0.99 -7260 AGBL4 ATP/GTP binding protein-like 4 165240 2 2 2 1 1 0 1 0 0 0 0.40 0.99 -7261 NCKIPSD NCK interacting protein with SH3 domain 435544 3 3 3 0 1 0 1 0 1 0 0.40 0.99 -7262 THUMPD3 THUMP domain containing 3 349188 4 3 4 0 0 1 3 0 0 0 0.40 0.99 -7263 OOEP oocyte expressed protein homolog (dog) 103488 1 1 1 1 0 0 0 0 1 0 0.40 0.99 -7264 MLEC 168980 2 2 2 1 2 0 0 0 0 0 0.40 0.99 -7265 ECSIT ECSIT homolog (Drosophila) 271720 3 3 3 0 2 1 0 0 0 0 0.40 0.99 -7266 TMEM120A transmembrane protein 120A 165408 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7267 OR52A1 olfactory receptor, family 52, subfamily A, member 1 211232 3 2 3 2 0 1 2 0 0 0 0.40 0.99 -7268 KCNV2 potassium channel, subfamily V, member 2 347032 6 5 6 1 4 1 0 0 1 0 0.40 0.99 -7269 CHRM1 cholinergic receptor, muscarinic 1 310604 3 3 3 2 2 0 1 0 0 0 0.40 0.99 -7270 FAM9C family with sequence similarity 9, member C 117600 1 1 1 0 0 0 1 0 0 0 0.40 0.99 -7271 IFNB1 interferon, beta 1, fibroblast 127232 1 1 1 0 1 0 0 0 0 0 0.40 0.99 -7272 PDE7A phosphodiesterase 7A 353780 3 3 3 2 1 1 0 0 1 0 0.40 0.99 -7273 COPE coatomer protein complex, subunit epsilon 178944 2 2 2 0 1 0 1 0 0 0 0.40 0.99 -7274 PSMD9 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 147456 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7275 N6AMT2 N-6 adenine-specific DNA methyltransferase 2 (putative) 148064 2 2 2 1 1 1 0 0 0 0 0.40 0.99 -7276 C17orf37 chromosome 17 open reading frame 37 60704 1 1 1 0 1 0 0 0 0 0 0.40 0.99 -7277 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif, 8 455916 5 4 5 0 2 0 2 0 1 0 0.40 0.99 -7278 LRRC16A leucine rich repeat containing 16A 892472 9 7 9 1 3 2 4 0 0 0 0.40 0.99 -7279 DFNB31 deafness, autosomal recessive 31 590576 8 7 8 1 4 2 2 0 0 0 0.40 0.99 -7280 IL27 interleukin 27 154712 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7281 CD177 CD177 molecule 266644 2 2 2 0 0 1 1 0 0 0 0.40 0.99 -7282 CBX5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) 132608 1 1 1 1 1 0 0 0 0 0 0.40 0.99 -7283 LGALS12 lectin, galactoside-binding, soluble, 12 (galectin 12) 235200 2 2 2 1 1 1 0 0 0 0 0.40 0.99 -7284 RAX2 retina and anterior neural fold homeobox 2 48188 1 1 1 0 1 0 0 0 0 0 0.40 0.99 -7285 ASAH2 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 191888 1 1 1 0 0 1 0 0 0 0 0.40 0.99 -7286 RBPJ recombination signal binding protein for immunoglobulin kappa J region 352072 5 3 5 0 2 0 3 0 0 0 0.40 0.99 -7287 ZNF311 zinc finger protein 311 334908 5 3 5 0 0 4 0 0 1 0 0.40 0.99 -7288 RELL2 RELT-like 2 207984 2 2 2 0 0 2 0 0 0 0 0.40 0.99 -7289 CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 647136 5 5 5 2 1 2 1 0 1 0 0.40 0.99 -7290 PRRT1 proline-rich transmembrane protein 1 77000 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7291 PPP3R1 protein phosphatase 3 (formerly 2B), regulatory subunit B, alpha isoform 119336 1 1 1 0 0 0 1 0 0 0 0.40 0.99 -7292 PMCH pro-melanin-concentrating hormone 114240 1 1 1 0 0 1 0 0 0 0 0.40 0.99 -7293 C12orf50 chromosome 12 open reading frame 50 289632 2 2 2 2 0 0 1 0 1 0 0.40 0.99 -7294 FHL3 four and a half LIM domains 3 193312 2 2 2 0 0 2 0 0 0 0 0.40 0.99 -7295 CCR7 chemokine (C-C motif) receptor 7 257376 3 3 3 1 1 2 0 0 0 0 0.40 0.99 -7296 MEGF11 multiple EGF-like-domains 11 547100 4 4 4 1 1 1 2 0 0 0 0.40 0.99 -7297 RFX6 634648 11 6 11 0 4 4 2 0 1 0 0.40 0.99 -7298 METTL14 316960 3 3 3 0 0 0 3 0 0 0 0.40 0.99 -7299 LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 549612 4 4 3 2 3 0 0 1 0 0 0.40 0.99 -7300 H2BFWT H2B histone family, member W, testis-specific 120064 2 2 2 0 1 1 0 0 0 0 0.40 0.99 -7301 OR5AU1 olfactory receptor, family 5, subfamily AU, member 1 244832 2 2 1 2 2 0 0 0 0 0 0.40 0.99 -7302 SATL1 spermidine/spermine N1-acetyl transferase-like 1 306432 2 2 2 1 0 1 1 0 0 0 0.40 0.99 -7303 OR7D4 olfactory receptor, family 7, subfamily D, member 4 211232 2 2 2 0 1 0 1 0 0 0 0.40 0.99 -7304 MERTK c-mer proto-oncogene tyrosine kinase 682500 5 5 5 1 2 2 1 0 0 0 0.40 0.99 -7305 RGN regucalcin (senescence marker protein-30) 198680 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7306 GSTO1 glutathione S-transferase omega 1 164528 1 1 1 0 0 0 1 0 0 0 0.40 0.99 -7307 NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 263748 3 3 3 1 2 0 1 0 0 0 0.40 0.99 -7308 LASP1 LIM and SH3 protein 1 167104 2 2 2 0 2 0 0 0 0 0 0.40 0.99 -7309 CDC20 cell division cycle 20 homolog (S. cerevisiae) 337316 3 3 3 0 1 1 1 0 0 0 0.40 0.99 -7310 SOAT1 sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 383712 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7311 OBFC2A oligonucleotide/oligosaccharide-binding fold containing 2A 143136 1 1 1 1 0 0 1 0 0 0 0.40 0.99 -7312 C8orf31 chromosome 8 open reading frame 31 92960 1 1 1 2 0 1 0 0 0 0 0.40 0.99 -7313 CCDC125 coiled-coil domain containing 125 353920 4 3 4 1 0 2 2 0 0 0 0.40 0.99 -7314 ZNF480 zinc finger protein 480 353248 2 2 2 0 0 1 0 0 1 0 0.40 0.99 -7315 KRT15 keratin 15 314272 2 2 2 1 0 2 0 0 0 0 0.40 0.99 -7316 C3orf19 chromosome 3 open reading frame 19 324352 4 3 4 0 1 3 0 0 0 0 0.40 0.99 -7317 RAPSN receptor-associated protein of the synapse 242408 2 2 2 2 0 1 0 0 1 0 0.40 0.99 -7318 C13orf26 chromosome 13 open reading frame 26 201152 1 1 1 0 0 1 0 0 0 0 0.40 0.99 -7319 TMCO1 transmembrane and coiled-coil domains 1 133280 1 1 1 0 0 0 1 0 0 0 0.40 0.99 -7320 RBM25 RNA binding motif protein 25 583296 6 5 6 1 1 3 1 0 1 0 0.40 0.99 -7321 PCDHA6 protocadherin alpha 6 622328 10 8 10 1 5 2 3 0 0 0 0.40 0.99 -7322 RAB32 RAB32, member RAS oncogene family 146832 2 2 2 0 1 1 0 0 0 0 0.40 0.99 -7323 CCDC45 coiled-coil domain containing 45 538344 6 5 6 1 1 2 2 0 1 0 0.40 0.99 -7324 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide 170464 2 2 2 0 2 0 0 0 0 0 0.40 0.99 -7325 GPR32 G protein-coupled receptor 32 240800 2 2 2 1 1 0 1 0 0 0 0.40 0.99 -7326 RAB9B RAB9B, member RAS oncogene family 136640 1 1 1 0 0 0 1 0 0 0 0.40 0.99 -7327 WDR48 WD repeat domain 48 472640 2 2 2 0 0 0 1 0 1 0 0.40 0.99 -7328 SLC17A5 solute carrier family 17 (anion/sugar transporter), member 5 335968 3 3 3 1 1 2 0 0 0 0 0.40 0.99 -7329 RAB23 RAB23, member RAS oncogene family 165312 2 2 2 1 1 1 0 0 0 0 0.40 0.99 -7330 STK17B serine/threonine kinase 17b 256928 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7331 NCAN neurocan 805504 7 6 7 1 3 3 0 1 0 0 0.40 0.99 -7332 CST8 cystatin 8 (cystatin-related epididymal specific) 98784 1 1 1 0 1 0 0 0 0 0 0.40 0.99 -7333 OR5M10 olfactory receptor, family 5, subfamily M, member 10 213248 2 2 2 0 1 1 0 0 0 0 0.40 0.99 -7334 ZNF549 zinc finger protein 549 424704 8 4 8 0 3 2 3 0 0 0 0.40 0.99 -7335 CPEB2 cytoplasmic polyadenylation element binding protein 2 346332 2 2 2 0 1 0 0 0 1 0 0.40 0.99 -7336 ZCCHC14 zinc finger, CCHC domain containing 14 604324 6 6 6 0 4 0 2 0 0 0 0.40 0.99 -7337 BRF1 BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) 393008 3 3 3 0 1 0 1 0 1 0 0.40 0.99 -7338 ATAD2B ATPase family, AAA domain containing 2B 927152 9 5 9 0 2 3 1 0 3 0 0.40 0.99 -7339 OXCT1 3-oxoacid CoA transferase 1 365344 3 3 3 2 1 2 0 0 0 0 0.40 0.99 -7340 KCNK10 potassium channel, subfamily K, member 10 387016 4 4 4 1 3 1 0 0 0 0 0.40 0.99 -7341 TMEM179B transmembrane protein 179B 143920 1 1 1 0 0 1 0 0 0 0 0.40 0.99 -7342 KIRREL kin of IRRE like (Drosophila) 412160 5 4 5 0 2 1 2 0 0 0 0.40 0.99 -7343 OSBP oxysterol binding protein 497544 3 3 3 0 0 1 1 0 1 0 0.40 0.99 -7344 NMI N-myc (and STAT) interactor 213248 2 2 2 1 1 1 0 0 0 0 0.40 0.99 -7345 PDE1A phosphodiesterase 1A, calmodulin-dependent 390208 4 4 4 0 3 0 1 0 0 0 0.40 0.99 -7346 AMELX amelogenin (amelogenesis imperfecta 1, X-linked) 143808 1 1 1 0 0 0 1 0 0 0 0.40 0.99 -7347 BIN3 bridging integrator 3 167052 1 1 1 0 0 0 0 0 1 0 0.40 0.99 -7348 TMEM183A transmembrane protein 183A 234528 2 2 2 0 0 1 1 0 0 0 0.40 0.99 -7349 SLFN12 schlafen family member 12 391776 3 3 3 0 1 1 1 0 0 0 0.40 0.99 -7350 PCM1 pericentriolar material 1 1346760 12 7 12 4 1 4 2 0 2 3 0.40 0.99 -7351 PLCL2 phospholipase C-like 2 680064 7 6 7 2 2 2 3 0 0 0 0.40 0.99 -7352 C10orf12 chromosome 10 open reading frame 12 839552 7 6 7 2 4 2 0 0 1 0 0.40 0.99 -7353 OR2D2 olfactory receptor, family 2, subfamily D, member 2 208544 2 2 2 1 1 0 1 0 0 0 0.40 0.99 -7354 C9orf129 chromosome 9 open reading frame 129 117348 1 1 1 0 1 0 0 0 0 0 0.40 0.99 -7355 SERPINA9 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 297472 2 2 2 0 1 0 1 0 0 0 0.40 0.99 -7356 TAS2R1 taste receptor, type 2, member 1 202496 2 2 1 2 0 2 0 0 0 0 0.40 0.99 -7357 NIPSNAP3B nipsnap homolog 3B (C. elegans) 163240 1 1 1 0 1 0 0 0 0 0 0.40 0.99 -7358 PHKB phosphorylase kinase, beta 795508 5 5 5 4 2 2 1 0 0 0 0.40 0.99 -7359 PLAU plasminogen activator, urokinase 298844 3 3 3 1 1 0 1 0 1 0 0.40 0.99 -7360 FAM115C 318656 4 3 4 0 1 3 0 0 0 0 0.41 0.99 -7361 F7 coagulation factor VII (serum prothrombin conversion accelerator) 236188 3 3 3 1 2 1 0 0 0 0 0.41 0.99 -7362 CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2 352800 3 3 3 3 0 2 1 0 0 0 0.41 0.99 -7363 ERP44 284256 2 2 2 2 0 1 1 0 0 0 0.41 0.99 -7364 MBD4 methyl-CpG binding domain protein 4 397600 3 3 3 1 0 2 1 0 0 0 0.41 0.99 -7365 KRT23 keratin 23 (histone deacetylase inducible) 291424 2 2 2 2 1 0 0 0 1 0 0.41 0.99 -7366 DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35 492800 5 5 5 1 2 0 2 0 1 0 0.41 0.99 -7367 KRTAP5-11 keratin associated protein 5-11 106400 1 1 1 1 0 1 0 0 0 0 0.41 0.99 -7368 STRADB 291424 2 2 2 0 0 2 0 0 0 0 0.41 0.99 -7369 C10orf32 chromosome 10 open reading frame 32 67272 1 1 1 0 0 1 0 0 0 0 0.41 0.99 -7370 PKP2 plakophilin 2 578200 7 7 7 1 4 1 2 0 0 0 0.41 0.99 -7371 KRTAP19-1 keratin associated protein 19-1 62048 1 1 1 1 0 1 0 0 0 0 0.41 0.99 -7372 HIGD2A HIG1 domain family, member 2A 73696 1 1 1 0 0 0 1 0 0 0 0.41 0.99 -7373 EPB41L2 erythrocyte membrane protein band 4.1-like 2 692160 6 5 6 1 2 3 1 0 0 0 0.41 0.99 -7374 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 365344 4 4 3 0 3 1 0 0 0 0 0.41 0.99 -7375 RNF157 ring finger protein 157 466116 3 3 3 1 0 0 3 0 0 0 0.41 0.99 -7376 GCET2 germinal center expressed transcript 2 127008 1 1 1 0 0 0 0 0 1 0 0.41 0.99 -7377 LPCAT3 338688 2 2 2 0 0 1 0 0 1 0 0.41 0.99 -7378 KIF2C kinesin family member 2C 506688 5 5 5 0 2 3 0 0 0 0 0.41 0.99 -7379 LRRC3B leucine rich repeat containing 3B 175616 1 1 1 3 0 1 0 0 0 0 0.41 0.99 -7380 TFF2 trefoil factor 2 (spasmolytic protein 1) 90944 1 1 1 0 1 0 0 0 0 0 0.41 0.99 -7381 KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 243264 3 3 3 2 0 1 2 0 0 0 0.41 0.99 -7382 LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 458976 4 4 4 0 1 2 1 0 0 0 0.41 0.99 -7383 FXN frataxin 110208 1 1 1 0 1 0 0 0 0 0 0.41 0.99 -7384 RSPO4 R-spondin family, member 4 122996 1 1 1 1 0 1 0 0 0 0 0.41 0.99 -7385 DKK3 dickkopf homolog 3 (Xenopus laevis) 226464 2 2 2 1 2 0 0 0 0 0 0.41 0.99 -7386 NHSL2 NHS-like 2 441056 4 4 4 6 1 3 0 0 0 0 0.41 0.99 -7387 FPR1 formyl peptide receptor 1 236768 2 2 2 0 1 0 1 0 0 0 0.41 0.99 -7388 GOLM1 golgi membrane protein 1 278208 3 2 3 1 0 2 0 0 1 0 0.41 0.99 -7389 FGF7 fibroblast growth factor 7 (keratinocyte growth factor) 124656 1 1 1 0 0 1 0 0 0 0 0.41 0.99 -7390 ANTXR2 anthrax toxin receptor 2 295564 3 3 3 1 1 0 2 0 0 0 0.41 0.99 -7391 RBP5 retinol binding protein 5, cellular 94976 1 1 1 0 1 0 0 0 0 0 0.41 0.99 -7392 DEFB125 defensin, beta 125 107296 1 1 1 0 0 0 1 0 0 0 0.41 0.99 -7393 OR52K2 olfactory receptor, family 52, subfamily K, member 2 212576 3 2 3 1 1 0 2 0 0 0 0.41 0.99 -7394 PLSCR1 phospholipid scramblase 1 221536 2 2 2 0 1 0 1 0 0 0 0.41 0.99 -7395 KCNV1 potassium channel, subfamily V, member 1 293720 3 3 3 1 2 0 1 0 0 0 0.41 0.99 -7396 PCGF1 polycomb group ring finger 1 181016 2 2 2 0 0 1 1 0 0 0 0.41 0.99 -7397 OR4K14 olfactory receptor, family 4, subfamily K, member 14 209888 1 1 1 1 0 0 1 0 0 0 0.41 0.99 -7398 CD46 CD46 molecule, complement regulatory protein 293888 3 3 3 2 0 1 2 0 0 0 0.41 0.99 -7399 STEAP2 six transmembrane epithelial antigen of the prostate 2 341600 2 2 2 0 0 0 0 0 2 0 0.41 0.99 -7400 C18orf54 chromosome 18 open reading frame 54 256928 2 2 2 1 0 2 0 0 0 0 0.41 0.99 -7401 CALB2 calbindin 2, 29kDa (calretinin) 188160 2 2 2 1 1 0 0 1 0 0 0.41 0.99 -7402 IFNK interferon, kappa 140672 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -7403 RAB18 RAB18, member RAS oncogene family 135584 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -7404 CHRNB3 cholinergic receptor, nicotinic, beta 3 313740 4 3 4 3 2 2 0 0 0 0 0.41 1.00 -7405 OAS2 2'-5'-oligoadenylate synthetase 2, 69/71kDa 499296 7 5 7 0 2 4 1 0 0 0 0.41 1.00 -7406 ALS2CR12 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 312256 2 2 2 1 0 0 2 0 0 0 0.41 1.00 -7407 CKMT1B creatine kinase, mitochondrial 1B 117012 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -7408 CHGB chromogranin B (secretogranin 1) 447216 5 5 5 3 3 1 1 0 0 0 0.41 1.00 -7409 ZNF81 zinc finger protein 81 448448 4 4 4 0 0 2 2 0 0 0 0.41 1.00 -7410 PPM1B protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform 342048 2 2 2 1 1 0 1 0 0 0 0.41 1.00 -7411 CLIC2 chloride intracellular channel 2 172032 1 1 1 2 0 1 0 0 0 0 0.41 1.00 -7412 CCDC73 coiled-coil domain containing 73 732032 7 4 7 2 1 3 2 0 1 0 0.41 1.00 -7413 WISP1 WNT1 inducible signaling pathway protein 1 238084 2 2 2 3 1 0 0 0 1 0 0.41 1.00 -7414 FAM127C family with sequence similarity 127, member C 77504 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -7415 C9orf30 chromosome 9 open reading frame 30 187264 1 1 1 1 0 0 0 0 1 0 0.41 1.00 -7416 SLC16A2 solute carrier family 16, member 2 (monocarboxylic acid transporter 8) 322968 3 3 3 0 2 1 0 0 0 0 0.41 1.00 -7417 RANBP1 RAN binding protein 1 110992 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -7418 RAB4B RAB4B, member RAS oncogene family 147360 2 2 2 1 1 0 1 0 0 0 0.41 1.00 -7419 MPDZ multiple PDZ domain protein 1399896 11 8 10 3 3 7 0 0 1 0 0.41 1.00 -7420 MRPL37 mitochondrial ribosomal protein L37 287336 3 3 3 2 2 0 1 0 0 0 0.41 1.00 -7421 VSIG4 V-set and immunoglobulin domain containing 4 276592 2 2 2 0 2 0 0 0 0 0 0.41 1.00 -7422 GFM1 G elongation factor, mitochondrial 1 509824 4 4 4 2 1 1 2 0 0 0 0.41 1.00 -7423 DNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4 229824 2 2 2 0 1 1 0 0 0 0 0.41 1.00 -7424 C12orf57 chromosome 12 open reading frame 57 87528 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -7425 FAM101B family with sequence similarity 101, member B 84632 1 1 1 1 0 1 0 0 0 0 0.41 1.00 -7426 PPP1R14C protein phosphatase 1, regulatory (inhibitor) subunit 14C 91588 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -7427 BOK BCL2-related ovarian killer 90300 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -7428 WFDC5 WAP four-disulfide core domain 5 86912 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -7429 ODAM odontogenic, ameloblast asssociated 197120 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -7430 ZNF614 zinc finger protein 614 397376 4 3 4 2 1 0 2 0 1 0 0.41 1.00 -7431 KIAA1143 KIAA1143 106848 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -7432 ARL13A ADP-ribosylation factor-like 13A 184960 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -7433 DLX4 distal-less homeobox 4 164612 3 2 3 1 2 1 0 0 0 0 0.41 1.00 -7434 EPHX4 243152 3 3 3 0 1 1 1 0 0 0 0.41 1.00 -7435 LPIN2 lipin 2 617624 5 5 5 0 1 2 1 0 1 0 0.41 1.00 -7436 ZNF708 zinc finger protein 708 382592 6 4 6 0 1 4 1 0 0 0 0.41 1.00 -7437 ZNF3 zinc finger protein 3 332864 3 3 3 1 1 2 0 0 0 0 0.41 1.00 -7438 FAM84A family with sequence similarity 84, member A 160484 2 2 2 0 1 0 1 0 0 0 0.41 1.00 -7439 MTHFSD methenyltetrahydrofolate synthetase domain containing 226296 3 3 3 0 0 2 1 0 0 0 0.41 1.00 -7440 SLC10A5 solute carrier family 10 (sodium/bile acid cotransporter family), member 5 295904 3 3 3 2 0 2 1 0 0 0 0.41 1.00 -7441 ATP6V1B2 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 350876 2 2 2 0 0 0 1 0 1 0 0.41 1.00 -7442 MDH1 malate dehydrogenase 1, NAD (soluble) 233184 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -7443 PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 220456 1 1 1 1 0 0 0 0 1 0 0.41 1.00 -7444 FSIP1 fibrous sheath interacting protein 1 400960 4 3 4 0 0 4 0 0 0 0 0.41 1.00 -7445 ERRFI1 ERBB receptor feedback inhibitor 1 313112 3 3 2 0 3 0 0 0 0 0 0.41 1.00 -7446 NCAPG2 non-SMC condensin II complex, subunit G2 792960 6 5 6 1 4 1 0 0 1 0 0.41 1.00 -7447 TREX2 three prime repair exonuclease 2 76924 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -7448 C20orf106 chromosome 20 open reading frame 106 117376 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -7449 PRDM7 PR domain containing 7 328608 2 2 2 1 0 1 0 0 1 0 0.41 1.00 -7450 USF1 upstream transcription factor 1 217952 3 2 3 0 1 1 0 0 1 0 0.41 1.00 -7451 C3orf32 chromosome 3 open reading frame 32 228788 2 2 2 0 0 2 0 0 0 0 0.41 1.00 -7452 SST somatostatin 72936 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -7453 CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 374080 3 3 3 1 1 1 1 0 0 0 0.41 1.00 -7454 NR2C1 nuclear receptor subfamily 2, group C, member 1 435008 4 3 4 1 0 3 1 0 0 0 0.41 1.00 -7455 JAM3 junctional adhesion molecule 3 226576 3 3 3 0 1 0 2 0 0 0 0.41 1.00 -7456 GSC2 goosecoid homeobox 2 35280 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -7457 TM2D1 TM2 domain containing 1 142540 2 2 2 0 1 0 0 1 0 0 0.41 1.00 -7458 D4S234E 128576 2 2 2 0 2 0 0 0 0 0 0.41 1.00 -7459 KLHL24 kelch-like 24 (Drosophila) 409248 4 3 4 1 2 0 2 0 0 0 0.41 1.00 -7460 RCAN3 RCAN family member 3 166208 2 2 2 0 2 0 0 0 0 0 0.41 1.00 -7461 EPS15 epidermal growth factor receptor pathway substrate 15 624432 7 6 7 1 3 2 1 0 1 0 0.41 1.00 -7462 IFNA13 interferon, alpha 13 97728 2 1 2 0 1 0 1 0 0 0 0.41 1.00 -7463 MLF2 myeloid leukemia factor 2 164504 2 2 2 0 1 1 0 0 0 0 0.41 1.00 -7464 TRAFD1 TRAF-type zinc finger domain containing 1 401632 3 3 3 0 0 2 0 1 0 0 0.41 1.00 -7465 ZNF671 zinc finger protein 671 363104 4 2 4 2 0 1 0 0 1 2 0.41 1.00 -7466 TEX261 testis expressed 261 137536 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -7467 UNC45B unc-45 homolog B (C. elegans) 627296 9 5 9 1 4 3 2 0 0 0 0.41 1.00 -7468 FGF13 fibroblast growth factor 13 227360 3 3 3 1 1 2 0 0 0 0 0.41 1.00 -7469 AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 221848 3 3 3 2 2 1 0 0 0 0 0.41 1.00 -7470 TRIM60 tripartite motif-containing 60 317828 4 3 4 2 2 1 1 0 0 0 0.41 1.00 -7471 RUNDC2A RUN domain containing 2A 257376 3 3 3 1 1 1 0 1 0 0 0.41 1.00 -7472 RHOBTB1 Rho-related BTB domain containing 1 476448 4 4 3 2 2 2 0 0 0 0 0.41 1.00 -7473 RPIA ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) 192408 3 3 3 2 1 2 0 0 0 0 0.41 1.00 -7474 KDM6B 911880 4 4 4 0 1 0 0 0 3 0 0.41 1.00 -7475 IL16 interleukin 16 (lymphocyte chemoattractant factor) 893844 10 6 10 4 2 5 1 0 2 0 0.41 1.00 -7476 CREB5 cAMP responsive element binding protein 5 363328 4 3 4 3 2 2 0 0 0 0 0.41 1.00 -7477 MAGEA3 melanoma antigen family A, 3 185780 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -7478 PDIK1L PDLIM1 interacting kinase 1 like 231616 2 2 2 1 0 1 0 0 1 0 0.41 1.00 -7479 PRNP prion protein (p27-30) (Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia) 155624 2 2 2 1 1 0 1 0 0 0 0.41 1.00 -7480 GPSM3 G-protein signaling modulator 3 (AGS3-like, C. elegans) 90776 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -7481 CD164L2 CD164 sialomucin-like 2 103528 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -7482 RYK RYK receptor-like tyrosine kinase 334312 4 3 4 1 0 3 1 0 0 0 0.41 1.00 -7483 KCNB1 potassium voltage-gated channel, Shab-related subfamily, member 1 555268 5 5 5 4 2 3 0 0 0 0 0.41 1.00 -7484 SPAG5 sperm associated antigen 5 823872 7 6 7 1 3 2 2 0 0 0 0.41 1.00 -7485 UGGT1 1073936 12 9 12 2 3 2 7 0 0 0 0.41 1.00 -7486 CPNE1 copine I 379232 5 4 5 1 4 0 1 0 0 0 0.41 1.00 -7487 GTPBP2 GTP binding protein 2 398312 2 2 2 1 0 1 0 0 1 0 0.41 1.00 -7488 SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 352956 3 3 3 2 1 2 0 0 0 0 0.41 1.00 -7489 EML5 echinoderm microtubule associated protein like 5 1309408 12 8 12 4 4 2 4 0 2 0 0.41 1.00 -7490 SATB2 SATB homeobox 2 463456 4 4 4 3 1 0 2 0 1 0 0.41 1.00 -7491 IQCH IQ motif containing H 706608 7 6 7 2 3 0 4 0 0 0 0.41 1.00 -7492 ANKRD33 ankyrin repeat domain 33 313376 3 3 3 1 3 0 0 0 0 0 0.41 1.00 -7493 REPS2 RALBP1 associated Eps domain containing 2 398272 3 3 3 0 1 0 1 0 1 0 0.41 1.00 -7494 SAMD3 sterile alpha motif domain containing 3 359072 3 3 3 0 1 1 1 0 0 0 0.41 1.00 -7495 OR52N5 olfactory receptor, family 52, subfamily N, member 5 219296 2 2 2 1 2 0 0 0 0 0 0.41 1.00 -7496 JAG1 jagged 1 (Alagille syndrome) 812084 8 8 7 2 5 1 1 0 1 0 0.41 1.00 -7497 WFDC3 WAP four-disulfide core domain 3 161280 2 2 2 0 0 1 1 0 0 0 0.41 1.00 -7498 SERPINE3 277864 2 2 2 0 0 0 2 0 0 0 0.41 1.00 -7499 CABIN1 1385804 11 10 11 2 5 3 1 0 2 0 0.41 1.00 -7500 FAM20B family with sequence similarity 20, member B 281792 2 2 2 0 1 0 0 0 1 0 0.41 1.00 -7501 CCDC65 coiled-coil domain containing 65 333088 4 3 4 0 0 3 1 0 0 0 0.41 1.00 -7502 TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa 146944 1 1 1 1 0 0 0 0 1 0 0.41 1.00 -7503 C8orf46 chromosome 8 open reading frame 46 124420 1 1 1 0 0 0 0 0 1 0 0.42 1.00 -7504 SOS1 son of sevenless homolog 1 (Drosophila) 917056 7 7 7 2 0 5 2 0 0 0 0.42 1.00 -7505 MLL4 1502236 11 11 11 1 5 2 0 0 4 0 0.42 1.00 -7506 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 57624 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7507 RAPGEF5 Rap guanine nucleotide exchange factor (GEF) 5 484096 3 3 3 0 1 1 1 0 0 0 0.42 1.00 -7508 MR1 major histocompatibility complex, class I-related 235200 3 3 2 3 2 0 1 0 0 0 0.42 1.00 -7509 TGM3 transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) 476520 7 6 7 0 3 1 3 0 0 0 0.42 1.00 -7510 CBY1 chibby homolog 1 (Drosophila) 88928 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7511 CYLD cylindromatosis (turban tumor syndrome) 658336 5 4 5 1 3 0 0 0 2 0 0.42 1.00 -7512 SOX30 SRY (sex determining region Y)-box 30 411796 6 4 6 0 4 0 2 0 0 0 0.42 1.00 -7513 MIPOL1 mirror-image polydactyly 1 307552 1 1 1 1 0 0 0 0 1 0 0.42 1.00 -7514 PTGR2 244608 2 2 2 1 0 1 1 0 0 0 0.42 1.00 -7515 SH3PXD2B SH3 and PX domains 2B 617792 9 7 9 0 2 6 1 0 0 0 0.42 1.00 -7516 CYP2S1 cytochrome P450, family 2, subfamily S, polypeptide 1 300080 3 3 3 0 2 0 1 0 0 0 0.42 1.00 -7517 C13orf1 chromosome 13 open reading frame 1 128548 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7518 IL10RA interleukin 10 receptor, alpha 380972 2 2 2 0 0 0 1 0 1 0 0.42 1.00 -7519 TEC tec protein tyrosine kinase 439528 3 3 3 1 1 0 2 0 0 0 0.42 1.00 -7520 C17orf79 chromosome 17 open reading frame 79 104832 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -7521 P2RY2 purinergic receptor P2Y, G-protein coupled, 2 237944 3 3 3 0 2 0 1 0 0 0 0.42 1.00 -7522 CAPN3 calpain 3, (p94) 573296 6 6 6 2 6 0 0 0 0 0 0.42 1.00 -7523 IPP intracisternal A particle-promoted polypeptide 400288 6 3 6 0 1 3 1 0 1 0 0.42 1.00 -7524 SPANXN3 SPANX family, member N3 97216 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -7525 LHFPL3 lipoma HMGIC fusion partner-like 3 157752 1 1 1 1 0 0 0 0 1 0 0.42 1.00 -7526 CBFB core-binding factor, beta subunit 124124 3 2 2 0 2 1 0 0 0 0 0.42 1.00 -7527 CSPP1 centrosome and spindle pole associated protein 1 872480 11 6 11 0 4 2 0 1 2 2 0.42 1.00 -7528 SLC29A3 solute carrier family 29 (nucleoside transporters), member 3 321328 3 3 3 0 0 2 1 0 0 0 0.42 1.00 -7529 ABCB10 ATP-binding cassette, sub-family B (MDR/TAP), member 10 391552 3 3 3 0 2 0 0 0 1 0 0.42 1.00 -7530 NPFFR2 neuropeptide FF receptor 2 355040 4 4 4 1 2 1 1 0 0 0 0.42 1.00 -7531 ITGA9 integrin, alpha 9 678944 6 5 6 3 2 2 0 0 2 0 0.42 1.00 -7532 IL19 interleukin 19 150392 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -7533 INHBC inhibin, beta C 239008 3 3 3 3 1 2 0 0 0 0 0.42 1.00 -7534 SIX3 SIX homeobox 3 163380 2 2 2 0 0 1 0 1 0 0 0.42 1.00 -7535 PRKCA protein kinase C, alpha 467488 4 4 4 1 1 3 0 0 0 0 0.42 1.00 -7536 KDM5A 1159928 12 8 12 2 3 2 5 0 2 0 0.42 1.00 -7537 TMED3 transmembrane emp24 protein transport domain containing 3 142632 2 2 2 1 1 0 0 0 1 0 0.42 1.00 -7538 OR2A25 olfactory receptor, family 2, subfamily A, member 25 209888 2 2 2 0 1 1 0 0 0 0 0.42 1.00 -7539 STRBP spermatid perinuclear RNA binding protein 467488 5 4 5 3 1 1 2 0 1 0 0.42 1.00 -7540 CHP2 132692 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7541 ZNF592 zinc finger protein 592 856408 10 9 10 3 2 4 4 0 0 0 0.42 1.00 -7542 NT5M 5',3'-nucleotidase, mitochondrial 120204 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7543 RNASE4 ribonuclease, RNase A family, 4 100352 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7544 FAM86A family with sequence similarity 86, member A 175000 2 2 2 0 1 1 0 0 0 0 0.42 1.00 -7545 OR8B3 olfactory receptor, family 8, subfamily B, member 3 211904 2 2 2 0 0 1 1 0 0 0 0.42 1.00 -7546 CHUK conserved helix-loop-helix ubiquitous kinase 496272 6 4 6 1 2 1 3 0 0 0 0.42 1.00 -7547 USP25 ubiquitin specific peptidase 25 720160 8 5 7 5 3 3 2 0 0 0 0.42 1.00 -7548 PGBD2 piggyBac transposable element derived 2 400288 2 2 2 0 0 1 0 0 1 0 0.42 1.00 -7549 TBC1D8B TBC1 domain family, member 8B (with GRAM domain) 786912 4 4 4 1 2 1 0 0 1 0 0.42 1.00 -7550 GHRHR growth hormone releasing hormone receptor 280184 2 2 2 0 1 1 0 0 0 0 0.42 1.00 -7551 INPP5A inositol polyphosphate-5-phosphatase, 40kDa 254548 2 2 2 0 0 0 1 0 1 0 0.42 1.00 -7552 HERPUD2 HERPUD family member 2 280672 2 2 2 3 1 0 1 0 0 0 0.42 1.00 -7553 C6orf70 chromosome 6 open reading frame 70 470316 6 4 6 1 1 3 2 0 0 0 0.42 1.00 -7554 YY1AP1 YY1 associated protein 1 557788 5 5 5 1 2 2 1 0 0 0 0.42 1.00 -7555 TPPP2 tubulin polymerization-promoting protein family member 2 117600 1 1 1 1 0 1 0 0 0 0 0.42 1.00 -7556 RANBP10 RAN binding protein 10 408132 3 3 3 0 1 1 1 0 0 0 0.42 1.00 -7557 SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) 196000 2 2 2 0 0 2 0 0 0 0 0.42 1.00 -7558 NUP37 nucleoporin 37kDa 227808 2 2 2 1 0 2 0 0 0 0 0.42 1.00 -7559 SP7 Sp7 transcription factor 285504 3 3 3 1 1 1 0 0 1 0 0.42 1.00 -7560 IL6ST interleukin 6 signal transducer (gp130, oncostatin M receptor) 631008 3 3 3 0 0 0 2 0 1 0 0.42 1.00 -7561 AMAC1L3 acyl-malonyl condensing enzyme 1-like 3 229600 2 2 2 1 0 2 0 0 0 0 0.42 1.00 -7562 SLC38A9 solute carrier family 38, member 9 390208 3 3 3 0 0 1 1 0 1 0 0.42 1.00 -7563 CNGA1 cyclic nucleotide gated channel alpha 1 461528 6 3 6 1 1 2 1 0 2 0 0.42 1.00 -7564 RETSAT retinol saturase (all-trans-retinol 13,14-reductase) 419272 3 3 3 0 1 1 1 0 0 0 0.42 1.00 -7565 ASB9 ankyrin repeat and SOCS box-containing 9 211008 2 2 2 0 1 0 1 0 0 0 0.42 1.00 -7566 CLDN12 claudin 12 165536 2 2 2 1 0 1 1 0 0 0 0.42 1.00 -7567 TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) 302624 3 3 3 0 1 2 0 0 0 0 0.42 1.00 -7568 TAS2R4 taste receptor, type 2, member 4 202496 2 2 2 2 2 0 0 0 0 0 0.42 1.00 -7569 RDX radixin 401920 3 3 3 0 2 1 0 0 0 0 0.42 1.00 -7570 TMEM133 transmembrane protein 133 88256 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7571 GPX1 glutathione peroxidase 1 105364 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7572 XKR8 XK, Kell blood group complex subunit-related family, member 8 202272 2 2 2 0 0 1 1 0 0 0 0.42 1.00 -7573 KRTAP4-1 keratin associated protein 4-1 87136 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7574 CHRND cholinergic receptor, nicotinic, delta 358848 4 4 4 1 3 1 0 0 0 0 0.42 1.00 -7575 SRPX2 sushi-repeat-containing protein, X-linked 2 318032 1 1 1 0 0 0 0 0 1 0 0.42 1.00 -7576 C19orf18 chromosome 19 open reading frame 18 150528 2 2 2 0 1 1 0 0 0 0 0.42 1.00 -7577 CACNG1 calcium channel, voltage-dependent, gamma subunit 1 153440 2 2 2 0 2 0 0 0 0 0 0.42 1.00 -7578 GNMT glycine N-methyltransferase 157248 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -7579 SLU7 SLU7 splicing factor homolog (S. cerevisiae) 407904 4 3 4 0 1 1 2 0 0 0 0.42 1.00 -7580 SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 534016 9 5 8 3 3 3 3 0 0 0 0.42 1.00 -7581 NR1I2 nuclear receptor subfamily 1, group I, member 2 321888 2 2 2 0 0 0 1 0 1 0 0.42 1.00 -7582 NFIL3 nuclear factor, interleukin 3 regulated 312032 3 3 3 1 2 0 0 0 1 0 0.42 1.00 -7583 MRPL13 mitochondrial ribosomal protein L13 126560 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -7584 FAM83A family with sequence similarity 83, member A 260876 3 3 3 0 1 1 1 0 0 0 0.42 1.00 -7585 CPA3 carboxypeptidase A3 (mast cell) 290752 3 3 3 0 2 0 1 0 0 0 0.42 1.00 -7586 TARS2 threonyl-tRNA synthetase 2, mitochondrial (putative) 499296 5 5 5 2 1 2 1 0 1 0 0.42 1.00 -7587 INTS12 integrator complex subunit 12 316512 2 2 2 0 0 1 1 0 0 0 0.42 1.00 -7588 HECA headcase homolog (Drosophila) 311956 3 3 3 0 0 2 0 0 1 0 0.42 1.00 -7589 KLRC4 killer cell lectin-like receptor subfamily C, member 4 110432 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7590 USP19 ubiquitin specific peptidase 19 890904 7 6 7 2 3 2 0 0 2 0 0.42 1.00 -7591 RNF146 ring finger protein 146 242144 2 2 2 0 0 1 0 0 1 0 0.42 1.00 -7592 GBP5 guanylate binding protein 5 403424 3 3 3 2 1 1 0 0 1 0 0.42 1.00 -7593 ANTXR1 anthrax toxin receptor 1 385448 3 3 3 2 2 1 0 0 0 0 0.42 1.00 -7594 ANXA7 annexin A7 340256 3 3 3 1 2 0 1 0 0 0 0.42 1.00 -7595 TMCC2 transmembrane and coiled-coil domain family 2 412888 4 4 4 2 3 0 1 0 0 0 0.42 1.00 -7596 ZNF765 zinc finger protein 765 354816 4 3 4 0 0 3 1 0 0 0 0.42 1.00 -7597 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 107520 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7598 SLC28A1 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 455288 4 4 4 0 3 0 0 0 1 0 0.42 1.00 -7599 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 252832 2 2 2 1 0 0 2 0 0 0 0.42 1.00 -7600 ECE2 endothelin converting enzyme 2 711376 9 8 9 3 2 4 2 1 0 0 0.42 1.00 -7601 DSCAML1 Down syndrome cell adhesion molecule like 1 1350364 14 13 14 7 9 4 0 0 1 0 0.42 1.00 -7602 PDS5B PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) 1003520 8 6 8 4 2 1 2 0 3 0 0.42 1.00 -7603 OR52M1 olfactory receptor, family 52, subfamily M, member 1 214592 1 1 1 1 0 0 0 0 1 0 0.42 1.00 -7604 WAPAL wings apart-like homolog (Drosophila) 816480 5 4 5 1 1 1 2 0 1 0 0.42 1.00 -7605 CARD17 77280 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7606 ZNF140 zinc finger protein 140 311360 3 3 3 1 0 2 1 0 0 0 0.42 1.00 -7607 XPO4 exportin 4 787676 6 5 6 0 1 1 2 0 2 0 0.42 1.00 -7608 IARS2 isoleucyl-tRNA synthetase 2, mitochondrial 691264 6 6 6 0 3 2 1 0 0 0 0.42 1.00 -7609 RAB22A RAB22A, member RAS oncogene family 128352 1 1 1 1 0 0 0 0 1 0 0.42 1.00 -7610 OR6X1 olfactory receptor, family 6, subfamily X, member 1 211232 3 2 3 1 1 1 1 0 0 0 0.42 1.00 -7611 C5orf30 chromosome 5 open reading frame 30 139160 2 2 1 0 2 0 0 0 0 0 0.42 1.00 -7612 GRK1 G protein-coupled receptor kinase 1 220112 2 2 2 1 2 0 0 0 0 0 0.42 1.00 -7613 AHCTF1 AT hook containing transcription factor 1 1556352 10 8 10 1 3 3 3 0 1 0 0.42 1.00 -7614 IFNA1 interferon, alpha 1 98208 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -7615 DNAJC16 DnaJ (Hsp40) homolog, subfamily C, member 16 536620 3 3 3 1 1 1 0 0 1 0 0.42 1.00 -7616 ACSM4 acyl-CoA synthetase medium-chain family member 4 402080 3 3 3 4 1 0 1 0 1 0 0.42 1.00 -7617 TMEM85 transmembrane protein 85 115888 1 1 1 1 0 1 0 0 0 0 0.42 1.00 -7618 RAB11FIP4 RAB11 family interacting protein 4 (class II) 356152 2 2 2 2 1 0 0 0 1 0 0.42 1.00 -7619 SCD stearoyl-CoA desaturase (delta-9-desaturase) 247296 2 2 2 1 1 1 0 0 0 0 0.42 1.00 -7620 ABI3 ABI gene family, member 3 222068 2 2 2 0 0 2 0 0 0 0 0.42 1.00 -7621 CA9 carbonic anhydrase IX 307216 2 2 2 1 0 1 1 0 0 0 0.42 1.00 -7622 B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 220640 1 1 1 0 0 0 0 0 1 0 0.42 1.00 -7623 FAM40B family with sequence similarity 40, member B 552384 5 5 5 0 5 0 0 0 0 0 0.42 1.00 -7624 ACOT1 acyl-CoA thioesterase 1 149228 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7625 SLC12A3 solute carrier family 12 (sodium/chloride transporters), member 3 701396 5 5 5 2 2 1 1 0 1 0 0.42 1.00 -7626 TMEM95 transmembrane protein 95 122296 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -7627 TMEM140 transmembrane protein 140 125888 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7628 YPEL2 yippee-like 2 (Drosophila) 84224 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -7629 GRM2 glutamate receptor, metabotropic 2 529396 4 4 4 1 2 0 1 0 1 0 0.42 1.00 -7630 MRPL45 mitochondrial ribosomal protein L45 213472 2 2 2 0 0 1 0 0 1 0 0.42 1.00 -7631 C7orf23 chromosome 7 open reading frame 23 83552 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -7632 PFDN5 prefoldin subunit 5 109536 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -7633 SHC2 SHC (Src homology 2 domain containing) transforming protein 2 242212 1 1 1 1 0 0 0 0 1 0 0.43 1.00 -7634 ARG1 arginase, liver 224224 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -7635 WDR41 WD repeat domain 41 320768 2 2 2 1 1 0 1 0 0 0 0.43 1.00 -7636 SIX5 SIX homeobox 5 220164 2 2 2 0 0 0 0 0 2 0 0.43 1.00 -7637 RBPJL recombination signal binding protein for immunoglobulin kappa J region-like 327208 3 3 3 2 0 1 1 0 1 0 0.43 1.00 -7638 TPCN2 two pore segment channel 2 497308 5 4 5 2 1 2 1 0 1 0 0.43 1.00 -7639 HIST1H4F histone cluster 1, H4f 70784 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7640 ASB7 ankyrin repeat and SOCS box-containing 7 217084 2 2 2 1 0 0 2 0 0 0 0.43 1.00 -7641 HOXD11 homeobox D11 102340 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7642 KRTCAP2 keratinocyte associated protein 2 113880 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7643 CD38 CD38 molecule 209440 2 2 2 1 1 0 1 0 0 0 0.43 1.00 -7644 WARS tryptophanyl-tRNA synthetase 326144 3 3 3 0 1 1 1 0 0 0 0.43 1.00 -7645 ATP5G3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) 100576 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -7646 PTP4A1 protein tyrosine phosphatase type IVA, member 1 121408 1 1 1 1 0 0 0 0 1 0 0.43 1.00 -7647 XAF1 XIAP associated factor 1 209216 2 2 2 0 0 1 1 0 0 0 0.43 1.00 -7648 IL2RB interleukin 2 receptor, beta 343228 2 2 2 2 0 1 0 0 1 0 0.43 1.00 -7649 MRPS25 mitochondrial ribosomal protein S25 120376 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -7650 CASP9 caspase 9, apoptosis-related cysteine peptidase 257824 2 2 2 0 1 0 1 0 0 0 0.43 1.00 -7651 KDM3A 910784 6 6 6 2 2 2 1 0 1 0 0.43 1.00 -7652 FAM188B 525504 4 4 4 1 2 1 0 0 1 0 0.43 1.00 -7653 NXT2 nuclear transport factor 2-like export factor 2 134680 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7654 SORD sorbitol dehydrogenase 200828 2 2 2 1 1 1 0 0 0 0 0.43 1.00 -7655 ENDOU 256704 2 2 2 0 0 0 2 0 0 0 0.43 1.00 -7656 AK3 adenylate kinase 3 148336 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7657 DCAF17 333536 3 3 3 0 0 2 1 0 0 0 0.43 1.00 -7658 AGPAT6 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) 302488 2 2 2 2 0 2 0 0 0 0 0.43 1.00 -7659 MYOM2 myomesin (M-protein) 2, 165kDa 1017408 11 11 11 5 9 2 0 0 0 0 0.43 1.00 -7660 KIAA1324 KIAA1324 687520 7 6 7 4 2 3 1 0 1 0 0.43 1.00 -7661 SCFD2 sec1 family domain containing 2 468384 7 5 6 0 4 2 1 0 0 0 0.43 1.00 -7662 MRPL1 mitochondrial ribosomal protein L1 227136 3 2 3 1 0 0 2 0 1 0 0.43 1.00 -7663 DCAF13 399952 6 5 6 0 2 2 2 0 0 0 0.43 1.00 -7664 FTSJD2 582400 6 5 6 4 4 1 1 0 0 0 0.43 1.00 -7665 DYNLRB1 dynein, light chain, roadblock-type 1 68768 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7666 HEBP2 heme binding protein 2 118272 1 1 1 1 0 0 0 0 1 0 0.43 1.00 -7667 SLC26A2 solute carrier family 26 (sulfate transporter), member 2 498988 7 3 7 2 1 3 2 0 1 0 0.43 1.00 -7668 DFNA5 deafness, autosomal dominant 5 342048 2 2 2 2 1 0 1 0 0 0 0.43 1.00 -7669 C8orf74 chromosome 8 open reading frame 74 180128 2 2 2 1 2 0 0 0 0 0 0.43 1.00 -7670 RPS19BP1 ribosomal protein S19 binding protein 1 83104 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7671 COL19A1 collagen, type XIX, alpha 1 812896 5 4 5 4 0 2 2 0 1 0 0.43 1.00 -7672 DCAF4 345632 3 3 3 0 1 1 1 0 0 0 0.43 1.00 -7673 OR4C13 olfactory receptor, family 4, subfamily C, member 13 209216 2 2 2 3 0 1 1 0 0 0 0.43 1.00 -7674 HIF1AN hypoxia-inducible factor 1, alpha subunit inhibitor 217364 2 2 2 0 0 1 1 0 0 0 0.43 1.00 -7675 SPOP speckle-type POZ protein 260064 2 2 2 1 0 1 1 0 0 0 0.43 1.00 -7676 FMR1 fragile X mental retardation 1 427280 6 4 6 2 5 1 0 0 0 0 0.43 1.00 -7677 ABCB6 ATP-binding cassette, sub-family B (MDR/TAP), member 6 537236 4 4 4 5 0 0 3 0 1 0 0.43 1.00 -7678 OTOS otospiralin 63168 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7679 FAM50B family with sequence similarity 50, member B 205716 3 3 3 1 3 0 0 0 0 0 0.43 1.00 -7680 TGFBR3 transforming growth factor, beta receptor III 586880 8 5 8 2 2 4 2 0 0 0 0.43 1.00 -7681 CBLN4 cerebellin 4 precursor 132104 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -7682 GFPT1 glutamine-fructose-6-phosphate transaminase 1 472864 4 4 4 0 1 3 0 0 0 0 0.43 1.00 -7683 CDK11B 343040 3 3 3 2 1 0 1 0 1 0 0.43 1.00 -7684 IFI44 interferon-induced protein 44 306208 3 3 3 1 2 1 0 0 0 0 0.43 1.00 -7685 C7orf65 104832 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -7686 HIST1H2BE histone cluster 1, H2be 86240 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -7687 GLRX2 glutaredoxin 2 115700 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -7688 NFATC2IP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein 205464 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7689 APPL2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 454376 4 3 4 2 2 0 1 0 1 0 0.43 1.00 -7690 SNRPB2 small nuclear ribonucleoprotein polypeptide B'' 157248 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7691 ZNF449 zinc finger protein 449 352352 3 3 3 2 0 3 0 0 0 0 0.43 1.00 -7692 NAT10 N-acetyltransferase 10 714560 6 5 6 2 1 5 0 0 0 0 0.43 1.00 -7693 NANOG Nanog homeobox 174720 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7694 KIAA0895L 255328 2 2 2 1 0 0 1 0 1 0 0.43 1.00 -7695 MFN2 mitofusin 2 524608 4 4 4 0 1 2 0 0 1 0 0.43 1.00 -7696 OR2Z1 olfactory receptor, family 2, subfamily Z, member 1 212576 2 2 2 0 2 0 0 0 0 0 0.43 1.00 -7697 MEPCE methylphosphate capping enzyme 353500 3 3 3 0 1 1 0 0 1 0 0.43 1.00 -7698 RGS8 regulator of G-protein signaling 8 145824 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -7699 FMNL1 formin-like 1 612444 6 6 6 2 1 2 2 0 1 0 0.43 1.00 -7700 MTCP1 mature T-cell proliferation 1 75264 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -7701 NAA16 599592 7 5 7 1 2 1 3 0 1 0 0.43 1.00 -7702 ZNF135 zinc finger protein 135 460852 4 4 4 2 1 1 2 0 0 0 0.43 1.00 -7703 MTRF1 mitochondrial translational release factor 1 307776 3 3 3 0 3 0 0 0 0 0 0.43 1.00 -7704 GIN1 gypsy retrotransposon integrase 1 357728 4 3 4 1 1 2 0 0 1 0 0.43 1.00 -7705 CTPS2 CTP synthase II 409696 4 3 4 0 1 2 1 0 0 0 0.43 1.00 -7706 R3HDML R3H domain containing-like 175000 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -7707 FAM155A 280476 3 3 3 1 0 3 0 0 0 0 0.43 1.00 -7708 KRT7 keratin 7 304276 3 3 3 0 1 1 1 0 0 0 0.43 1.00 -7709 C3orf33 chromosome 3 open reading frame 33 172928 2 2 2 1 2 0 0 0 0 0 0.43 1.00 -7710 S100A16 S100 calcium binding protein A16 71680 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7711 IL25 interleukin 25 124320 1 1 1 1 1 0 0 0 0 0 0.43 1.00 -7712 ARAF v-raf murine sarcoma 3611 viral oncogene homolog 400944 3 3 3 1 1 0 0 0 2 0 0.43 1.00 -7713 PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 157024 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -7714 HOXA1 homeobox A1 227584 3 3 3 1 3 0 0 0 0 0 0.43 1.00 -7715 TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 114744 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7716 ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 350864 4 3 4 0 1 1 1 0 1 0 0.43 1.00 -7717 ACTL7A actin-like 7A 293888 3 3 3 1 2 1 0 0 0 0 0.43 1.00 -7718 DAP death-associated protein 63192 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7719 TUBA8 tubulin, alpha 8 304808 2 2 2 1 0 0 2 0 0 0 0.43 1.00 -7720 CYR61 cysteine-rich, angiogenic inducer, 61 256144 2 2 2 0 0 0 1 0 1 0 0.43 1.00 -7721 FAM69A family with sequence similarity 69, member A 98448 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7722 FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed 93632 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -7723 PSMA2 proteasome (prosome, macropain) subunit, alpha type, 2 165088 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -7724 ZNF562 zinc finger protein 562 241248 2 2 2 0 0 0 2 0 0 0 0.43 1.00 -7725 SASH1 SAM and SH3 domain containing 1 839080 7 7 7 5 3 3 0 0 1 0 0.43 1.00 -7726 EMID1 EMI domain containing 1 246148 2 2 2 0 1 1 0 0 0 0 0.43 1.00 -7727 EED embryonic ectoderm development 308672 2 2 2 0 0 0 1 0 1 0 0.43 1.00 -7728 ATG16L1 ATG16 autophagy related 16-like 1 (S. cerevisiae) 408520 4 3 4 1 2 0 1 0 1 0 0.43 1.00 -7729 LOC200726 121784 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7730 GBP4 guanylate binding protein 4 440608 3 3 3 1 0 3 0 0 0 0 0.43 1.00 -7731 ZNF273 zinc finger protein 273 386624 3 3 3 0 0 2 1 0 0 0 0.43 1.00 -7732 DNAJC30 134960 2 2 2 0 0 2 0 0 0 0 0.43 1.00 -7733 XPOT exportin, tRNA (nuclear export receptor for tRNAs) 668640 6 4 5 1 2 1 2 0 1 0 0.43 1.00 -7734 SYNPR synaptoporin 183232 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -7735 EN2 engrailed homeobox 2 91336 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7736 COG4 component of oligomeric golgi complex 4 545468 5 5 5 3 2 0 2 0 1 0 0.43 1.00 -7737 ZDHHC16 zinc finger, DHHC-type containing 16 262808 2 2 2 1 1 0 1 0 0 0 0.43 1.00 -7738 KCNJ14 potassium inwardly-rectifying channel, subfamily J, member 14 185948 2 2 2 1 0 1 1 0 0 0 0.43 1.00 -7739 OR5AN1 olfactory receptor, family 5, subfamily AN, member 1 210560 1 1 1 1 1 0 0 0 0 0 0.43 1.00 -7740 APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 163660 2 2 2 0 1 1 0 0 0 0 0.43 1.00 -7741 RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2 849828 9 7 9 4 3 2 2 0 2 0 0.43 1.00 -7742 TBC1D20 TBC1 domain family, member 20 262080 2 2 2 1 0 1 1 0 0 0 0.43 1.00 -7743 RNF24 ring finger protein 24 106176 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -7744 GBA2 glucosidase, beta (bile acid) 2 638848 5 5 5 0 2 2 1 0 0 0 0.43 1.00 -7745 CA6 carbonic anhydrase VI 214816 2 2 2 1 2 0 0 0 0 0 0.43 1.00 -7746 HIST1H4L histone cluster 1, H4l 70784 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -7747 PCDH7 protocadherin 7 716044 7 6 7 1 2 3 1 0 1 0 0.43 1.00 -7748 SH3GLB2 SH3-domain GRB2-like endophilin B2 230048 2 2 2 1 1 1 0 0 0 0 0.43 1.00 -7749 RECQL5 RecQ protein-like 5 643808 6 6 6 1 1 4 1 0 0 0 0.43 1.00 -7750 MFSD1 major facilitator superfamily domain containing 1 329728 3 2 3 0 0 1 0 0 2 0 0.43 1.00 -7751 GTF3C2 general transcription factor IIIC, polypeptide 2, beta 110kDa 624776 5 5 5 4 2 1 1 0 1 0 0.43 1.00 -7752 SNUPN snurportin 1 249760 2 2 2 1 2 0 0 0 0 0 0.43 1.00 -7753 EFCAB5 EF-hand calcium binding domain 5 1002464 9 6 9 0 1 2 4 0 0 2 0.43 1.00 -7754 NECAB1 N-terminal EF-hand calcium binding protein 1 199776 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7755 INSIG2 insulin induced gene 2 156352 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7756 FKTN fukutin 318528 3 3 3 1 1 0 2 0 0 0 0.43 1.00 -7757 COG6 component of oligomeric golgi complex 6 455924 4 4 4 1 0 2 2 0 0 0 0.43 1.00 -7758 NCR3 natural cytotoxicity triggering receptor 3 107744 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -7759 SH3KBP1 SH3-domain kinase binding protein 1 474208 4 4 4 4 1 1 2 0 0 0 0.43 1.00 -7760 ABCB11 ATP-binding cassette, sub-family B (MDR/TAP), member 11 904824 11 7 11 3 2 5 3 0 1 0 0.43 1.00 -7761 KRT31 keratin 31 285992 4 4 4 2 4 0 0 0 0 0 0.43 1.00 -7762 IPO7 importin 7 718928 4 4 4 2 0 1 2 0 1 0 0.43 1.00 -7763 TMEM138 transmembrane protein 138 113120 1 1 1 1 1 0 0 0 0 0 0.43 1.00 -7764 DTNA dystrobrevin, alpha 538944 4 4 4 0 2 2 0 0 0 0 0.43 1.00 -7765 BAZ1B bromodomain adjacent to zinc finger domain, 1B 989408 6 6 6 6 1 1 2 0 2 0 0.43 1.00 -7766 CCDC68 coiled-coil domain containing 68 234752 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -7767 C10orf82 chromosome 10 open reading frame 82 107744 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -7768 FAM108C1 family with sequence similarity 108, member C1 119672 2 2 2 0 2 0 0 0 0 0 0.43 1.00 -7769 F11R F11 receptor 210560 2 2 2 2 1 0 1 0 0 0 0.43 1.00 -7770 TMPRSS3 transmembrane protease, serine 3 332836 2 2 2 0 1 0 0 1 0 0 0.44 1.00 -7771 DCAF4L1 267680 4 3 4 1 3 1 0 0 0 0 0.44 1.00 -7772 ERCC2 excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D) 484624 4 4 4 1 1 1 1 0 1 0 0.44 1.00 -7773 NCF4 neutrophil cytosolic factor 4, 40kDa 278096 3 3 3 1 1 1 1 0 0 0 0.44 1.00 -7774 ERF Ets2 repressor factor 338744 3 3 3 2 0 2 1 0 0 0 0.44 1.00 -7775 NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) 334208 2 2 2 0 0 2 0 0 0 0 0.44 1.00 -7776 MYO1D myosin ID 681192 6 6 5 2 4 0 1 0 1 0 0.44 1.00 -7777 RSL1D1 ribosomal L1 domain containing 1 338016 2 2 2 0 0 0 1 0 1 0 0.44 1.00 -7778 PARP3 poly (ADP-ribose) polymerase family, member 3 353032 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7779 INMT indolethylamine N-methyltransferase 179928 2 2 2 3 2 0 0 0 0 0 0.44 1.00 -7780 DUSP3 dual specificity phosphatase 3 102424 1 1 1 1 0 0 1 0 0 0 0.44 1.00 -7781 TGM2 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) 473944 7 6 7 4 3 3 1 0 0 0 0.44 1.00 -7782 MTCH1 mitochondrial carrier homolog 1 (C. elegans) 175280 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7783 HIST1H4G histone cluster 1, H4g 67424 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -7784 LILRA1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1 337344 4 2 4 1 0 2 1 0 1 0 0.44 1.00 -7785 APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G 263032 3 3 3 1 2 0 1 0 0 0 0.44 1.00 -7786 C2CD2 C2 calcium-dependent domain containing 2 395152 4 4 4 0 3 1 0 0 0 0 0.44 1.00 -7787 SLC39A10 solute carrier family 39 (zinc transporter), member 10 567168 4 4 4 1 1 1 1 0 1 0 0.44 1.00 -7788 BTG1 B-cell translocation gene 1, anti-proliferative 111244 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7789 THUMPD1 THUMP domain containing 1 219984 2 2 2 0 1 0 1 0 0 0 0.44 1.00 -7790 KCNK3 potassium channel, subfamily K, member 3 159564 2 2 2 2 2 0 0 0 0 0 0.44 1.00 -7791 UCMA 97888 1 1 1 1 1 0 0 0 0 0 0.44 1.00 -7792 CSF1 colony stimulating factor 1 (macrophage) 368564 2 2 2 1 1 1 0 0 0 0 0.44 1.00 -7793 FYB FYN binding protein (FYB-120/130) 512976 5 5 5 1 2 2 1 0 0 0 0.44 1.00 -7794 PRPSAP2 phosphoribosyl pyrophosphate synthetase-associated protein 2 257600 2 2 2 1 1 0 1 0 0 0 0.44 1.00 -7795 PRSS45 157472 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -7796 SCML1 sex comb on midleg-like 1 (Drosophila) 228704 2 2 2 0 0 1 1 0 0 0 0.44 1.00 -7797 RPL24 ribosomal protein L24 111552 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7798 NPTX2 neuronal pentraxin II 194964 2 2 2 3 0 1 0 1 0 0 0.44 1.00 -7799 VKORC1L1 vitamin K epoxide reductase complex, subunit 1-like 1 108248 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -7800 RSPH9 187432 4 3 4 1 1 3 0 0 0 0 0.44 1.00 -7801 PRDX1 peroxiredoxin 1 138880 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7802 PIF1 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) 332528 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7803 LEP leptin 114688 1 1 1 1 1 0 0 0 0 0 0.44 1.00 -7804 PRAMEF13 PRAME family member 13 99428 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -7805 ZDHHC19 zinc finger, DHHC-type containing 19 189952 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7806 MYST4 MYST histone acetyltransferase (monocytic leukemia) 4 1403612 10 9 10 6 3 1 4 1 1 0 0.44 1.00 -7807 AKR1E2 215040 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7808 CA1 carbonic anhydrase I 182336 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -7809 INSRR insulin receptor-related receptor 870584 8 7 8 0 3 2 1 0 2 0 0.44 1.00 -7810 ANKRD17 ankyrin repeat domain 17 1744328 12 10 12 3 1 7 2 0 2 0 0.44 1.00 -7811 SSTR2 somatostatin receptor 2 248864 3 3 3 2 3 0 0 0 0 0 0.44 1.00 -7812 ODZ4 odz, odd Oz/ten-m homolog 4 (Drosophila) 1392412 10 8 10 11 5 2 0 1 2 0 0.44 1.00 -7813 CBLN3 cerebellin 3 precursor 112472 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7814 DDX19A DEAD (Asp-Glu-Ala-As) box polypeptide 19A 326368 3 3 3 2 0 1 1 0 1 0 0.44 1.00 -7815 PKD1L2 polycystic kidney disease 1-like 2 1638512 17 10 17 3 5 5 3 1 3 0 0.44 1.00 -7816 SCYL1 SCY1-like 1 (S. cerevisiae) 489572 3 3 3 0 2 0 0 0 1 0 0.44 1.00 -7817 GAB4 GRB2-associated binding protein family, member 4 388472 3 3 3 1 1 0 2 0 0 0 0.44 1.00 -7818 ZNF673 zinc finger protein 673 118048 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7819 STX4 syntaxin 4 204592 2 2 2 1 1 1 0 0 0 0 0.44 1.00 -7820 OR5P3 olfactory receptor, family 5, subfamily P, member 3 208208 1 1 1 1 0 1 0 0 0 0 0.44 1.00 -7821 KCNK6 potassium channel, subfamily K, member 6 164472 2 2 2 2 0 1 1 0 0 0 0.44 1.00 -7822 AVPR1B arginine vasopressin receptor 1B 273196 3 3 3 1 3 0 0 0 0 0 0.44 1.00 -7823 PPP2R5B protein phosphatase 2, regulatory subunit B', beta isoform 307964 2 2 2 1 0 1 1 0 0 0 0.44 1.00 -7824 SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 522840 3 3 3 0 1 0 1 0 1 0 0.44 1.00 -7825 ZC3H12B zinc finger CCCH-type containing 12B 560084 4 4 4 0 2 1 1 0 0 0 0.44 1.00 -7826 KIF6 kinesin family member 6 555968 5 4 5 3 1 3 0 0 1 0 0.44 1.00 -7827 C14orf105 chromosome 14 open reading frame 105 204960 2 2 1 1 0 2 0 0 0 0 0.44 1.00 -7828 HLA-DOB major histocompatibility complex, class II, DO beta 145948 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7829 VOPP1 108920 2 2 2 0 2 0 0 0 0 0 0.44 1.00 -7830 ZNF7 zinc finger protein 7 465164 6 5 5 1 1 5 0 0 0 0 0.44 1.00 -7831 PRB3 proline-rich protein BstNI subfamily 3 196896 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7832 KDELR3 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 151116 1 1 1 1 0 1 0 0 0 0 0.44 1.00 -7833 ITGAM integrin, alpha M (complement component 3 receptor 3 subunit) 779656 8 8 8 2 4 3 1 0 0 0 0.44 1.00 -7834 TUSC5 tumor suppressor candidate 5 122220 2 2 2 1 2 0 0 0 0 0 0.44 1.00 -7835 TRIM39 tripartite motif-containing 39 232568 2 2 2 0 2 0 0 0 0 0 0.44 1.00 -7836 GAS2L3 growth arrest-specific 2 like 3 474208 3 3 3 1 1 1 1 0 0 0 0.44 1.00 -7837 C5orf35 chromosome 5 open reading frame 35 205548 2 2 2 0 1 1 0 0 0 0 0.44 1.00 -7838 PRB1 proline-rich protein BstNI subfamily 1 141792 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7839 LY6K lymphocyte antigen 6 complex, locus K 102312 1 1 1 1 1 0 0 0 0 0 0.44 1.00 -7840 ZFPL1 zinc finger protein-like 1 214172 3 3 3 0 0 3 0 0 0 0 0.44 1.00 -7841 PAX2 paired box 2 283860 3 3 3 1 2 0 0 1 0 0 0.44 1.00 -7842 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) 97300 1 1 1 1 1 0 0 0 0 0 0.44 1.00 -7843 T T, brachyury homolog (mouse) 295664 3 3 3 2 2 1 0 0 0 0 0.44 1.00 -7844 TCEAL6 transcription elongation factor A (SII)-like 6 124544 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -7845 MCM3AP minichromosome maintenance complex component 3 associated protein 1334868 13 8 13 2 7 3 1 0 2 0 0.44 1.00 -7846 UCN3 urocortin 3 (stresscopin) 109488 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7847 NMU neuromedin U 99680 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -7848 OR14J1 olfactory receptor, family 14, subfamily J, member 1 135800 3 2 3 0 1 1 1 0 0 0 0.44 1.00 -7849 CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 299880 3 3 3 0 1 1 0 0 1 0 0.44 1.00 -7850 RNF167 ring finger protein 167 243936 2 2 2 0 0 0 2 0 0 0 0.44 1.00 -7851 FAM13B 650048 7 5 7 1 1 3 2 0 1 0 0.44 1.00 -7852 OR13G1 olfactory receptor, family 13, subfamily G, member 1 207872 3 2 3 0 0 2 0 1 0 0 0.44 1.00 -7853 HOOK3 hook homolog 3 (Drosophila) 489216 4 3 4 2 0 1 3 0 0 0 0.44 1.00 -7854 RAD51AP2 782208 10 5 10 0 0 5 3 0 2 0 0.44 1.00 -7855 CDS1 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 297108 2 2 2 3 1 0 1 0 0 0 0.44 1.00 -7856 PHC1 polyhomeotic homolog 1 (Drosophila) 616700 6 5 6 1 4 1 1 0 0 0 0.44 1.00 -7857 POU2F2 POU class 2 homeobox 2 309800 4 3 4 1 1 1 1 1 0 0 0.44 1.00 -7858 GALNT2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) 369600 4 4 4 2 1 2 0 0 1 0 0.44 1.00 -7859 GNS glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID) 352376 4 2 4 1 1 2 0 0 1 0 0.44 1.00 -7860 HTR1D 5-hydroxytryptamine (serotonin) receptor 1D 254912 2 2 2 1 2 0 0 0 0 0 0.44 1.00 -7861 CDK5RAP1 CDK5 regulatory subunit associated protein 1 406784 3 3 3 0 2 0 1 0 0 0 0.44 1.00 -7862 EFNB1 ephrin-B1 217400 3 3 3 0 2 1 0 0 0 0 0.44 1.00 -7863 CD79B CD79b molecule, immunoglobulin-associated beta 160608 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -7864 CIT citron (rho-interacting, serine/threonine kinase 21) 1386056 14 12 14 2 9 2 1 0 2 0 0.44 1.00 -7865 CLEC18B 280480 2 2 2 1 1 0 0 0 1 0 0.44 1.00 -7866 FIZ1 FLT3-interacting zinc finger 1 168572 2 2 2 0 1 0 0 0 1 0 0.44 1.00 -7867 EDEM3 ER degradation enhancer, mannosidase alpha-like 3 618240 3 3 3 4 0 1 1 0 1 0 0.44 1.00 -7868 FOXP3 forkhead box P3 246104 2 2 2 0 0 1 1 0 0 0 0.44 1.00 -7869 WDR55 WD repeat domain 55 264320 2 2 2 0 0 0 1 0 1 0 0.44 1.00 -7870 MED13L mediator complex subunit 13-like 1502004 11 11 11 7 5 2 4 0 0 0 0.44 1.00 -7871 NCOA6 nuclear receptor coactivator 6 1398656 16 8 16 0 2 7 4 0 3 0 0.44 1.00 -7872 SKA2 115136 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7873 IFNA8 interferon, alpha 8 128576 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7874 MCTP2 multiple C2 domains, transmembrane 2 610400 10 6 9 2 5 1 4 0 0 0 0.44 1.00 -7875 C4orf31 chromosome 4 open reading frame 31 385056 5 4 5 2 1 2 2 0 0 0 0.44 1.00 -7876 HAND1 heart and neural crest derivatives expressed 1 135772 2 2 2 0 2 0 0 0 0 0 0.44 1.00 -7877 CPD carboxypeptidase D 818328 8 7 8 1 1 5 2 0 0 0 0.44 1.00 -7878 MON1B MON1 homolog B (yeast) 372736 4 4 4 1 4 0 0 0 0 0 0.44 1.00 -7879 SGTB small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 213920 2 2 2 1 0 1 1 0 0 0 0.44 1.00 -7880 PSORS1C2 psoriasis susceptibility 1 candidate 2 63616 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7881 C18orf45 chromosome 18 open reading frame 45 213024 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -7882 PAAF1 proteasomal ATPase-associated factor 1 267912 1 1 1 2 0 0 0 0 1 0 0.44 1.00 -7883 STMN2 stathmin-like 2 125440 1 1 1 1 0 0 0 0 1 0 0.44 1.00 -7884 RPRD2 968492 7 6 7 1 3 2 0 0 2 0 0.44 1.00 -7885 SLCO2B1 solute carrier organic anion transporter family, member 2B1 489244 5 5 5 2 4 0 1 0 0 0 0.44 1.00 -7886 C15orf26 chromosome 15 open reading frame 26 209216 2 2 2 3 0 0 2 0 0 0 0.44 1.00 -7887 ANKAR ankyrin and armadillo repeat containing 937880 5 5 5 3 2 0 1 0 2 0 0.44 1.00 -7888 GPR125 G protein-coupled receptor 125 866180 9 8 8 1 7 2 0 0 0 0 0.44 1.00 -7889 RPL21 ribosomal protein L21 110572 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7890 MYOZ3 myozenin 3 158144 2 2 2 0 1 1 0 0 0 0 0.44 1.00 -7891 FAM57A family with sequence similarity 57, member A 135660 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -7892 GLB1L galactosidase, beta 1-like 454496 3 3 3 2 1 2 0 0 0 0 0.44 1.00 -7893 AFF1 AF4/FMR2 family, member 1 831292 5 5 5 1 0 3 0 0 2 0 0.44 1.00 -7894 C10orf76 chromosome 10 open reading frame 76 486080 4 4 4 2 0 3 1 0 0 0 0.44 1.00 -7895 CARTPT CART prepropeptide 81312 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -7896 SLC7A14 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 525056 5 4 5 4 3 2 0 0 0 0 0.44 1.00 -7897 WTIP Wilms tumor 1 interacting protein 146496 1 1 1 1 0 0 0 0 1 0 0.44 1.00 -7898 C14orf153 chromosome 14 open reading frame 153 108920 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -7899 HIST1H2BO histone cluster 1, H2bo 86240 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -7900 MYCL1 v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) 197448 2 2 2 0 1 0 0 0 1 0 0.44 1.00 -7901 CCDC37 coiled-coil domain containing 37 397364 4 4 4 4 2 1 0 0 1 0 0.44 1.00 -7902 IGF1R insulin-like growth factor 1 receptor 917600 8 8 8 4 6 2 0 0 0 0 0.44 1.00 -7903 HEPACAM hepatocyte cell adhesion molecule 218428 2 2 2 1 1 1 0 0 0 0 0.44 1.00 -7904 C2CD3 C2 calcium-dependent domain containing 3 1347584 11 8 11 6 2 6 2 0 1 0 0.44 1.00 -7905 DEPDC4 DEP domain containing 4 202720 2 2 2 1 0 1 1 0 0 0 0.44 1.00 -7906 PRAM1 PML-RARA regulated adaptor molecule 1 395396 5 5 5 0 3 1 1 0 0 0 0.44 1.00 -7907 OR2T2 olfactory receptor, family 2, subfamily T, member 2 219296 2 2 2 0 0 2 0 0 0 0 0.44 1.00 -7908 CEACAM3 carcinoembryonic antigen-related cell adhesion molecule 3 176288 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -7909 ELSPBP1 epididymal sperm binding protein 1 155008 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -7910 AGFG1 382928 3 3 3 2 2 1 0 0 0 0 0.44 1.00 -7911 CANX calnexin 411040 2 2 2 0 1 0 0 0 1 0 0.44 1.00 -7912 SIRT2 sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae) 274984 2 2 2 0 0 1 1 0 0 0 0.44 1.00 -7913 MORF4L1 mortality factor 4 like 1 249600 2 2 2 1 1 1 0 0 0 0 0.45 1.00 -7914 SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) 606144 8 5 8 1 2 3 3 0 0 0 0.45 1.00 -7915 ZNF257 zinc finger protein 257 382592 11 4 10 0 2 8 1 0 0 0 0.45 1.00 -7916 HLF hepatic leukemia factor 202496 2 2 2 1 1 1 0 0 0 0 0.45 1.00 -7917 PCSK2 proprotein convertase subtilisin/kexin type 2 433188 4 4 4 2 2 1 1 0 0 0 0.45 1.00 -7918 ZNF718 zinc finger protein 718 325472 2 2 2 1 0 1 0 0 1 0 0.45 1.00 -7919 CNPY4 canopy 4 homolog (zebrafish) 172704 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -7920 ALS2CR11 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 435008 4 3 4 4 1 0 2 0 1 0 0.45 1.00 -7921 PNLIPRP1 pancreatic lipase-related protein 1 325248 4 3 4 1 0 2 2 0 0 0 0.45 1.00 -7922 C11orf16 chromosome 11 open reading frame 16 318704 2 2 2 0 0 1 0 0 1 0 0.45 1.00 -7923 COMMD9 COMM domain containing 9 131624 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -7924 REEP3 receptor accessory protein 3 154312 1 1 1 1 0 0 1 0 0 0 0.45 1.00 -7925 SNX10 sorting nexin 10 141120 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7926 SGPP1 sphingosine-1-phosphate phosphatase 1 226044 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -7927 UBXN10 189728 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7928 CLDN11 claudin 11 (oligodendrocyte transmembrane protein) 111184 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -7929 FIS1 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) 107296 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -7930 PIRT 84112 1 1 1 1 1 0 0 0 0 0 0.45 1.00 -7931 RFPL4B ret finger protein-like 4B 173600 2 2 2 0 0 2 0 0 0 0 0.45 1.00 -7932 THOC2 THO complex 2 1105216 10 6 10 1 1 3 5 0 1 0 0.45 1.00 -7933 IFT172 intraflagellar transport 172 homolog (Chlamydomonas) 1219008 11 10 10 5 6 3 1 0 1 0 0.45 1.00 -7934 GAMT guanidinoacetate N-methyltransferase 118692 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -7935 ING3 inhibitor of growth family, member 3 295904 2 2 2 0 1 0 1 0 0 0 0.45 1.00 -7936 CDK19 349664 5 4 5 0 4 0 1 0 0 0 0.45 1.00 -7937 ZADH2 zinc binding alcohol dehydrogenase, domain containing 2 233296 3 3 3 0 1 1 1 0 0 0 0.45 1.00 -7938 RBM4 RNA binding motif protein 4 247072 3 3 3 1 2 0 0 0 1 0 0.45 1.00 -7939 MYCBP2 MYC binding protein 2 3172736 19 14 19 3 4 7 4 0 0 4 0.45 1.00 -7940 RBP7 retinol binding protein 7, cellular 87836 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -7941 ERG v-ets erythroblastosis virus E26 oncogene homolog (avian) 337616 3 3 3 0 2 1 0 0 0 0 0.45 1.00 -7942 SIX1 SIX homeobox 1 188188 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -7943 C20orf26 chromosome 20 open reading frame 26 857912 9 8 7 2 8 1 0 0 0 0 0.45 1.00 -7944 PELI1 pellino homolog 1 (Drosophila) 286944 2 2 2 2 1 0 1 0 0 0 0.45 1.00 -7945 NFAM1 NFAT activating protein with ITAM motif 1 168760 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7946 IFNA7 interferon, alpha 7 128576 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -7947 C20orf79 chromosome 20 open reading frame 79 106400 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -7948 TFAM transcription factor A, mitochondrial 157976 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7949 TOP3A topoisomerase (DNA) III alpha 685256 6 6 6 1 6 0 0 0 0 0 0.45 1.00 -7950 SAMD14 sterile alpha motif domain containing 14 245980 4 4 4 0 2 1 1 0 0 0 0.45 1.00 -7951 SYT3 synaptotagmin III 383116 3 3 3 2 1 1 0 1 0 0 0.45 1.00 -7952 STX6 syntaxin 6 179200 1 1 1 1 1 0 0 0 0 0 0.45 1.00 -7953 PI4K2B phosphatidylinositol 4-kinase type 2 beta 271936 2 2 2 1 0 2 0 0 0 0 0.45 1.00 -7954 NCOR1 nuclear receptor co-repressor 1 1680672 12 9 12 5 4 2 3 0 3 0 0.45 1.00 -7955 CCDC58 coiled-coil domain containing 58 101920 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -7956 TSPAN16 tetraspanin 16 159264 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7957 C9orf4 chromosome 9 open reading frame 4 147840 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -7958 KCNE1L KCNE1-like 61372 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -7959 FAIM Fas apoptotic inhibitory molecule 159040 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -7960 SSH1 slingshot homolog 1 (Drosophila) 699504 6 6 6 3 4 1 0 0 1 0 0.45 1.00 -7961 HIST1H2AJ histone cluster 1, H2aj 76412 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -7962 SUCLG1 succinate-CoA ligase, alpha subunit 223816 2 2 2 2 1 0 0 0 1 0 0.45 1.00 -7963 TIA1 TIA1 cytotoxic granule-associated RNA binding protein 271712 2 2 2 0 1 0 0 0 1 0 0.45 1.00 -7964 PNPO pyridoxamine 5'-phosphate oxidase 163640 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7965 TAGLN2 transgelin 2 137984 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -7966 PLCD1 phospholipase C, delta 1 526464 7 6 7 0 3 4 0 0 0 0 0.45 1.00 -7967 TMEM5 transmembrane protein 5 298172 2 2 2 1 0 0 1 0 1 0 0.45 1.00 -7968 SFI1 Sfi1 homolog, spindle assembly associated (yeast) 783928 7 7 6 0 4 0 0 0 3 0 0.45 1.00 -7969 CTNNAL1 catenin (cadherin-associated protein), alpha-like 1 487880 7 4 7 2 1 4 2 0 0 0 0.45 1.00 -7970 SOX17 SRY (sex determining region Y)-box 17 133980 2 2 2 1 1 0 0 1 0 0 0.45 1.00 -7971 PTPRN protein tyrosine phosphatase, receptor type, N 641904 6 5 6 2 2 2 1 0 1 0 0.45 1.00 -7972 METTL10 methyltransferase like 10 132264 1 1 1 1 0 0 1 0 0 0 0.45 1.00 -7973 GRLF1 glucocorticoid receptor DNA binding factor 1 1008616 12 8 12 2 6 2 2 0 2 0 0.45 1.00 -7974 HCFC2 host cell factor C2 545792 6 5 6 0 3 2 1 0 0 0 0.45 1.00 -7975 AOC2 amine oxidase, copper containing 2 (retina-specific) 512288 4 4 4 2 3 1 0 0 0 0 0.45 1.00 -7976 GSTA1 glutathione S-transferase A1 155232 1 1 1 1 0 0 1 0 0 0 0.45 1.00 -7977 CXCR2 243488 2 2 2 1 0 2 0 0 0 0 0.45 1.00 -7978 OR3A3 olfactory receptor, family 3, subfamily A, member 3 202636 2 2 2 1 0 1 1 0 0 0 0.45 1.00 -7979 ZNF773 zinc finger protein 773 298172 5 3 5 0 2 2 0 0 1 0 0.45 1.00 -7980 NGFR nerve growth factor receptor (TNFR superfamily, member 16) 226368 3 3 3 1 1 1 1 0 0 0 0.45 1.00 -7981 SRP19 signal recognition particle 19kDa 101920 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -7982 CDKL1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 249312 4 3 4 1 2 1 1 0 0 0 0.45 1.00 -7983 RHPN2 rhophilin, Rho GTPase binding protein 2 458752 5 5 5 0 5 0 0 0 0 0 0.45 1.00 -7984 POTED 391864 9 4 8 1 2 5 1 1 0 0 0.45 1.00 -7985 FGF9 fibroblast growth factor 9 (glia-activating factor) 143136 1 1 1 1 0 0 0 0 1 0 0.45 1.00 -7986 FASLG Fas ligand (TNF superfamily, member 6) 192816 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -7987 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 328960 3 3 3 0 1 1 1 0 0 0 0.45 1.00 -7988 OR4F6 olfactory receptor, family 4, subfamily F, member 6 211232 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7989 TUBB4Q tubulin, beta polypeptide 4, member Q 187252 2 2 2 4 0 2 0 0 0 0 0.45 1.00 -7990 MLL5 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) 1271648 18 9 18 2 7 7 2 0 0 2 0.45 1.00 -7991 RDH5 retinol dehydrogenase 5 (11-cis/9-cis) 216188 1 1 1 1 0 0 0 0 1 0 0.45 1.00 -7992 RNFT2 ring finger protein, transmembrane 2 265444 2 2 2 2 1 1 0 0 0 0 0.45 1.00 -7993 NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) 182720 2 2 2 1 1 0 1 0 0 0 0.45 1.00 -7994 U2AF1 U2 small nuclear RNA auxiliary factor 1 180656 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -7995 NFYB nuclear transcription factor Y, beta 146048 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -7996 SLC5A2 solute carrier family 5 (sodium/glucose cotransporter), member 2 450772 4 4 4 1 0 3 0 0 1 0 0.45 1.00 -7997 LY6G6C lymphocyte antigen 6 complex, locus G6C 77700 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -7998 GC group-specific component (vitamin D binding protein) 329952 2 2 2 3 0 2 0 0 0 0 0.45 1.00 -7999 USP32 ubiquitin specific peptidase 32 1109024 10 8 10 1 2 3 4 0 1 0 0.45 1.00 -8000 GALNT10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) 380128 5 4 5 2 2 3 0 0 0 0 0.45 1.00 -8001 THOC6 THO complex 6 homolog (Drosophila) 233492 2 2 2 0 0 1 0 0 1 0 0.45 1.00 -8002 UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 364000 2 2 2 0 0 1 1 0 0 0 0.45 1.00 -8003 PTPN14 protein tyrosine phosphatase, non-receptor type 14 814464 7 6 7 1 2 2 0 0 3 0 0.45 1.00 -8004 SLC22A1 solute carrier family 22 (organic cation transporter), member 1 371980 3 3 3 0 3 0 0 0 0 0 0.45 1.00 -8005 CLEC3A C-type lectin domain family 3, member A 135744 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -8006 OR8J3 olfactory receptor, family 8, subfamily J, member 3 213248 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -8007 KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 138096 2 2 2 2 2 0 0 0 0 0 0.45 1.00 -8008 NCOA4 nuclear receptor coactivator 4 420980 4 4 3 0 3 1 0 0 0 0 0.45 1.00 -8009 MID2 midline 2 491456 3 3 3 1 0 2 1 0 0 0 0.45 1.00 -8010 TOMM20L 95536 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -8011 DAPP1 dual adaptor of phosphotyrosine and 3-phosphoinositides 178944 2 2 2 0 0 2 0 0 0 0 0.45 1.00 -8012 OR13D1 olfactory receptor, family 13, subfamily D, member 1 234080 2 2 2 1 0 2 0 0 0 0 0.45 1.00 -8013 HIATL1 hippocampus abundant transcript-like 1 326368 2 2 2 0 1 0 1 0 0 0 0.45 1.00 -8014 SLC16A12 solute carrier family 16, member 12 (monocarboxylic acid transporter 12) 332108 5 3 5 1 0 4 1 0 0 0 0.45 1.00 -8015 SCN5A sodium channel, voltage-gated, type V, alpha subunit 1397036 16 12 16 10 10 4 2 0 0 0 0.45 1.00 -8016 NSDHL NAD(P) dependent steroid dehydrogenase-like 257600 2 2 2 3 0 1 1 0 0 0 0.45 1.00 -8017 SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 273056 3 3 3 2 1 2 0 0 0 0 0.45 1.00 -8018 DNAH7 dynein, axonemal, heavy chain 7 2760456 20 14 20 8 6 4 6 0 4 0 0.45 1.00 -8019 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 139720 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -8020 SULT1C2 sulfotransferase family, cytosolic, 1C, member 2 205856 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -8021 OR1J2 olfactory receptor, family 1, subfamily J, member 2 211904 2 2 2 1 0 2 0 0 0 0 0.45 1.00 -8022 RRP1B ribosomal RNA processing 1 homolog B (S. cerevisiae) 440644 4 4 4 1 3 0 1 0 0 0 0.45 1.00 -8023 ALS2 amyotrophic lateral sclerosis 2 (juvenile) 1151016 12 9 12 3 2 7 3 0 0 0 0.45 1.00 -8024 LRRC8E leucine rich repeat containing 8 family, member E 472108 3 3 3 2 1 0 0 0 2 0 0.45 1.00 -8025 EBNA1BP2 EBNA1 binding protein 2 216608 3 3 3 1 1 1 1 0 0 0 0.45 1.00 -8026 LMOD3 leiomodin 3 (fetal) 378184 3 3 3 1 1 1 0 0 1 0 0.45 1.00 -8027 ZC3H8 zinc finger CCCH-type containing 8 198360 1 1 1 2 0 1 0 0 0 0 0.45 1.00 -8028 CCT6B chaperonin containing TCP1, subunit 6B (zeta 2) 368032 3 3 3 0 0 0 3 0 0 0 0.45 1.00 -8029 MRPS6 mitochondrial ribosomal protein S6 83244 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -8030 PCDHGA11 protocadherin gamma subfamily A, 11 642656 6 6 6 3 4 1 1 0 0 0 0.45 1.00 -8031 EPS8L2 EPS8-like 2 315352 2 2 2 0 0 0 0 0 2 0 0.45 1.00 -8032 FMN1 formin 1 788744 8 7 8 1 4 2 1 0 1 0 0.45 1.00 -8033 C14orf102 chromosome 14 open reading frame 102 795424 7 6 6 3 3 1 2 0 1 0 0.45 1.00 -8034 TMEM47 transmembrane protein 47 91144 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -8035 OR2B6 olfactory receptor, family 2, subfamily B, member 6 211904 2 2 2 1 1 1 0 0 0 0 0.45 1.00 -8036 C10orf114 chromosome 10 open reading frame 114 58560 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -8037 FBXL3 F-box and leucine-rich repeat protein 3 291872 3 3 3 2 1 0 2 0 0 0 0.45 1.00 -8038 SPANXE SPANX family, member E 67648 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -8039 AHSA1 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 207920 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -8040 OSGEPL1 O-sialoglycoprotein endopeptidase-like 1 285152 1 1 1 1 0 0 0 0 1 0 0.45 1.00 -8041 AQP8 aquaporin 8 181440 1 1 1 2 0 0 0 0 1 0 0.45 1.00 -8042 CSE1L CSE1 chromosome segregation 1-like (yeast) 674688 4 4 4 3 3 0 0 0 1 0 0.45 1.00 -8043 TGOLN2 trans-golgi network protein 2 285272 2 2 2 1 0 1 0 0 1 0 0.45 1.00 -8044 MRPL21 mitochondrial ribosomal protein L21 138320 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -8045 HIST1H2BF histone cluster 1, H2bf 86240 1 1 1 2 0 0 1 0 0 0 0.45 1.00 -8046 HIST1H4B histone cluster 1, H4b 70784 1 1 1 3 1 0 0 0 0 0 0.45 1.00 -8047 NLK nemo-like kinase 331488 2 2 2 1 1 1 0 0 0 0 0.45 1.00 -8048 PDGFA platelet-derived growth factor alpha polypeptide 74256 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -8049 ASPHD2 aspartate beta-hydroxylase domain containing 2 222908 2 2 2 1 1 0 0 0 1 0 0.45 1.00 -8050 TREML1 triggering receptor expressed on myeloid cells-like 1 215040 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -8051 MICAL2 microtubule associated monoxygenase, calponin and LIM domain containing 2 778400 6 5 6 1 1 4 0 0 1 0 0.45 1.00 -8052 GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 245728 3 3 3 1 2 0 1 0 0 0 0.45 1.00 -8053 KLRD1 killer cell lectin-like receptor subfamily D, member 1 126336 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -8054 BTNL2 butyrophilin-like 2 (MHC class II associated) 221676 3 3 3 2 1 2 0 0 0 0 0.45 1.00 -8055 ZNF428 zinc finger protein 428 98732 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -8056 PNRC1 proline-rich nuclear receptor coactivator 1 160020 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -8057 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 269336 2 2 2 2 0 1 0 0 1 0 0.45 1.00 -8058 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 302204 2 2 2 0 0 0 2 0 0 0 0.45 1.00 -8059 CALU calumenin 217728 2 2 2 1 0 2 0 0 0 0 0.45 1.00 -8060 FRMPD4 FERM and PDZ domain containing 4 898168 7 7 7 6 2 4 1 0 0 0 0.45 1.00 -8061 C15orf55 chromosome 15 open reading frame 55 758744 4 4 4 4 0 2 0 0 2 0 0.45 1.00 -8062 MEOX1 mesenchyme homeobox 1 171696 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -8063 KRTAP5-9 keratin associated protein 5-9 115136 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -8064 SBK1 SH3-binding domain kinase 1 161168 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -8065 CDRT15 CMT1A duplicated region transcript 15 129016 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -8066 CDR2L cerebellar degeneration-related protein 2-like 143120 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -8067 PURG purine-rich element binding protein G 207340 2 2 2 1 0 1 1 0 0 0 0.45 1.00 -8068 KNG1 kininogen 1 461440 4 4 3 0 1 0 1 0 2 0 0.45 1.00 -8069 FOXF2 forkhead box F2 138768 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -8070 C6orf222 chromosome 6 open reading frame 222 447584 3 3 3 0 0 0 1 0 2 0 0.45 1.00 -8071 EYA2 eyes absent homolog 2 (Drosophila) 374968 4 4 4 3 3 0 1 0 0 0 0.45 1.00 -8072 SYVN1 synovial apoptosis inhibitor 1, synoviolin 421848 3 3 3 1 1 1 1 0 0 0 0.45 1.00 -8073 DDIT4L DNA-damage-inducible transcript 4-like 132160 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -8074 ACTR3 ARP3 actin-related protein 3 homolog (yeast) 285792 3 3 3 1 1 0 2 0 0 0 0.45 1.00 -8075 PRR22 125860 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -8076 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kDa) 126336 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -8077 ABHD6 abhydrolase domain containing 6 234304 2 2 2 0 1 0 1 0 0 0 0.45 1.00 -8078 LYZL2 lysozyme-like 2 135520 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -8079 ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 772800 6 5 6 2 0 2 3 0 1 0 0.45 1.00 -8080 LCOR ligand dependent nuclear receptor corepressor 292908 2 2 2 0 1 1 0 0 0 0 0.45 1.00 -8081 C1orf168 chromosome 1 open reading frame 168 507808 7 5 7 3 1 5 1 0 0 0 0.45 1.00 -8082 GPR37L1 G protein-coupled receptor 37 like 1 323680 3 3 3 1 2 0 1 0 0 0 0.46 1.00 -8083 ZNF565 zinc finger protein 565 339584 3 3 3 1 2 1 0 0 0 0 0.46 1.00 -8084 OCA2 oculocutaneous albinism II 564256 5 5 5 5 4 0 0 0 1 0 0.46 1.00 -8085 MAPRE2 microtubule-associated protein, RP/EB family, member 2 226688 3 2 3 0 1 1 0 0 1 0 0.46 1.00 -8086 ZNF133 zinc finger protein 133 442176 4 4 4 2 1 2 1 0 0 0 0.46 1.00 -8087 NARS asparaginyl-tRNA synthetase 381472 3 3 3 2 0 2 1 0 0 0 0.46 1.00 -8088 CDC7 cell division cycle 7 homolog (S. cerevisiae) 396256 3 3 3 0 0 2 1 0 0 0 0.46 1.00 -8089 PHF14 PHD finger protein 14 589792 5 4 5 0 0 4 1 0 0 0 0.46 1.00 -8090 EPB42 erythrocyte membrane protein band 4.2 495656 5 4 5 1 2 2 1 0 0 0 0.46 1.00 -8091 OPTN optineurin 400064 4 4 4 1 2 1 1 0 0 0 0.46 1.00 -8092 ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 268128 2 2 2 2 0 0 2 0 0 0 0.46 1.00 -8093 CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) 1187960 10 9 10 2 4 4 2 0 0 0 0.46 1.00 -8094 ALKBH6 alkB, alkylation repair homolog 6 (E. coli) 126364 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8095 SSBP2 single-stranded DNA binding protein 2 258496 2 2 2 0 1 1 0 0 0 0 0.46 1.00 -8096 DDX50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 497000 3 3 3 1 1 1 0 0 1 0 0.46 1.00 -8097 WNT2B wingless-type MMTV integration site family, member 2B 281176 3 3 3 0 1 1 0 0 1 0 0.46 1.00 -8098 DHFR dihydrofolate reductase 124152 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8099 C18orf26 chromosome 18 open reading frame 26 144480 1 1 1 1 0 1 0 0 0 0 0.46 1.00 -8100 C2orf70 135248 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -8101 TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box) 346928 3 3 3 0 2 1 0 0 0 0 0.46 1.00 -8102 TCEAL5 transcription elongation factor A (SII)-like 5 140000 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -8103 RNF185 ring finger protein 185 132300 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8104 PHOSPHO2 phosphatase, orphan 2 163520 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -8105 C5orf48 93408 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -8106 OR51F2 olfactory receptor, family 51, subfamily F, member 2 231392 1 1 1 2 0 0 1 0 0 0 0.46 1.00 -8107 KIF1C kinesin family member 1C 722628 5 5 5 3 2 1 0 0 2 0 0.46 1.00 -8108 MSL1 226844 2 2 2 0 1 1 0 0 0 0 0.46 1.00 -8109 TBX19 T-box 19 308896 3 3 3 4 1 2 0 0 0 0 0.46 1.00 -8110 GTF3A general transcription factor IIIA 207032 2 2 1 0 0 2 0 0 0 0 0.46 1.00 -8111 KCTD4 potassium channel tetramerisation domain containing 4 175616 2 2 2 0 2 0 0 0 0 0 0.46 1.00 -8112 RPRM reprimo, TP53 dependent G2 arrest mediator candidate 67088 1 1 1 1 0 1 0 0 0 0 0.46 1.00 -8113 HMOX1 heme oxygenase (decycling) 1 177688 2 2 2 2 0 2 0 0 0 0 0.46 1.00 -8114 SELE selectin E (endothelial adhesion molecule 1) 421344 4 4 4 1 0 4 0 0 0 0 0.46 1.00 -8115 SCG3 secretogranin III 325920 3 3 3 0 0 2 1 0 0 0 0.46 1.00 -8116 PHTF2 putative homeodomain transcription factor 2 509664 4 3 4 0 1 1 1 0 1 0 0.46 1.00 -8117 BCKDK branched chain ketoacid dehydrogenase kinase 273168 3 3 3 1 1 2 0 0 0 0 0.46 1.00 -8118 RSRC2 arginine/serine-rich coiled-coil 2 308896 3 3 3 1 0 3 0 0 0 0 0.46 1.00 -8119 DLK1 delta-like 1 homolog (Drosophila) 249004 3 3 3 0 2 1 0 0 0 0 0.46 1.00 -8120 ZNF16 zinc finger protein 16 460768 4 4 4 1 3 0 1 0 0 0 0.46 1.00 -8121 MRPL39 mitochondrial ribosomal protein L39 257600 3 3 3 0 2 1 0 0 0 0 0.46 1.00 -8122 BZW2 basic leucine zipper and W2 domains 2 289512 3 2 3 1 1 0 1 0 1 0 0.46 1.00 -8123 BRS3 bombesin-like receptor 3 271488 3 2 3 1 1 2 0 0 0 0 0.46 1.00 -8124 INO80 1077664 9 7 9 1 5 2 1 0 1 0 0.46 1.00 -8125 C15orf39 chromosome 15 open reading frame 39 650168 4 4 4 1 0 2 0 0 2 0 0.46 1.00 -8126 SP4 Sp4 transcription factor 515760 3 3 3 2 1 1 0 0 1 0 0.46 1.00 -8127 INPP1 inositol polyphosphate-1-phosphatase 273280 2 2 2 0 2 0 0 0 0 0 0.46 1.00 -8128 BAG5 BCL2-associated athanogene 5 330148 4 2 3 0 2 0 0 0 2 0 0.46 1.00 -8129 ECE1 endothelin converting enzyme 1 511112 6 5 6 2 4 2 0 0 0 0 0.46 1.00 -8130 SYN2 synapsin II 299584 3 3 3 2 2 1 0 0 0 0 0.46 1.00 -8131 OPTC opticin 228732 3 3 3 0 2 1 0 0 0 0 0.46 1.00 -8132 ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 525056 9 6 9 0 3 3 3 0 0 0 0.46 1.00 -8133 ARL2 ADP-ribosylation factor-like 2 128528 1 1 1 0 0 0 0 1 0 0 0.46 1.00 -8134 AP1S1 adaptor-related protein complex 1, sigma 1 subunit 109560 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8135 RPS20 ribosomal protein S20 83356 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -8136 ZNF148 zinc finger protein 148 539616 3 3 3 0 0 1 2 0 0 0 0.46 1.00 -8137 SOX7 SRY (sex determining region Y)-box 7 242032 3 3 3 2 1 1 0 0 1 0 0.46 1.00 -8138 SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 275872 4 3 4 0 0 4 0 0 0 0 0.46 1.00 -8139 NOL8 nucleolar protein 8 770264 5 5 5 0 1 1 1 0 2 0 0.46 1.00 -8140 PTK2 PTK2 protein tyrosine kinase 2 741664 6 5 6 1 3 1 1 0 1 0 0.46 1.00 -8141 C4orf39 chromosome 4 open reading frame 39 93184 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -8142 ADA adenosine deaminase 246392 3 3 3 1 1 2 0 0 0 0 0.46 1.00 -8143 PSMD13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 283136 2 2 2 1 1 0 1 0 0 0 0.46 1.00 -8144 RARRES3 retinoic acid receptor responder (tazarotene induced) 3 114464 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -8145 GYPA glycophorin A (MNS blood group) 107744 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8146 STK38 serine/threonine kinase 38 324800 2 2 2 0 0 1 1 0 0 0 0.46 1.00 -8147 NR1I3 nuclear receptor subfamily 1, group I, member 3 274400 3 3 3 1 2 0 1 0 0 0 0.46 1.00 -8148 PITX2 paired-like homeodomain 2 260424 2 2 2 2 1 0 0 0 1 0 0.46 1.00 -8149 GLCE glucuronic acid epimerase 417984 6 4 6 0 2 3 1 0 0 0 0.46 1.00 -8150 CD8B CD8b molecule 159808 2 2 2 0 1 1 0 0 0 0 0.46 1.00 -8151 SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 260288 3 3 3 1 2 0 1 0 0 0 0.46 1.00 -8152 SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 363552 6 3 6 1 4 1 0 0 1 0 0.46 1.00 -8153 UBE2F ubiquitin-conjugating enzyme E2F (putative) 133056 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8154 NYX nyctalopin 95024 1 1 1 0 0 0 0 0 1 0 0.46 1.00 -8155 VPS25 vacuolar protein sorting 25 homolog (S. cerevisiae) 124320 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -8156 MTUS2 885168 12 7 12 9 5 6 0 0 1 0 0.46 1.00 -8157 HLA-DMA major histocompatibility complex, class II, DM alpha 124768 2 2 1 0 2 0 0 0 0 0 0.46 1.00 -8158 ZNF883 256256 3 2 3 2 0 2 0 0 1 0 0.46 1.00 -8159 TBCEL tubulin folding cofactor E-like 291872 2 2 2 0 0 1 1 0 0 0 0.46 1.00 -8160 GH2 growth hormone 2 226464 3 2 3 1 1 1 0 0 1 0 0.46 1.00 -8161 CHN1 chimerin (chimaerin) 1 302288 2 2 2 1 1 0 1 0 0 0 0.46 1.00 -8162 ITM2A integral membrane protein 2A 182648 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8163 ARSD arylsulfatase D 402728 3 3 3 0 2 0 1 0 0 0 0.46 1.00 -8164 FEZ2 fasciculation and elongation protein zeta 2 (zygin II) 190696 2 2 2 0 0 1 1 0 0 0 0.46 1.00 -8165 ASCC2 activating signal cointegrator 1 complex subunit 2 520008 3 3 3 0 2 0 0 0 1 0 0.46 1.00 -8166 SIX4 SIX homeobox 4 478268 8 6 8 3 0 7 1 0 0 0 0.46 1.00 -8167 CCK cholecystokinin 70280 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -8168 CLMN calmin (calponin-like, transmembrane) 678440 6 5 6 4 2 1 1 0 2 0 0.46 1.00 -8169 PRSS8 protease, serine, 8 233144 2 2 2 0 1 0 1 0 0 0 0.46 1.00 -8170 RBM41 RNA binding motif protein 41 284480 2 2 2 0 1 0 1 0 0 0 0.46 1.00 -8171 HIST1H3B histone cluster 1, H3b 83804 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -8172 FOSL2 FOS-like antigen 2 200676 2 2 2 1 0 1 0 0 1 0 0.46 1.00 -8173 KREMEN1 kringle containing transmembrane protein 1 305312 2 2 2 0 1 0 1 0 0 0 0.46 1.00 -8174 ANGPT4 angiopoietin 4 346616 3 3 3 2 0 2 0 1 0 0 0.46 1.00 -8175 AQP6 aquaporin 6, kidney specific 193760 2 2 2 0 1 1 0 0 0 0 0.46 1.00 -8176 NOS1AP nitric oxide synthase 1 (neuronal) adaptor protein 350812 4 4 4 3 1 1 1 0 1 0 0.46 1.00 -8177 CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 1528524 12 11 12 6 5 5 1 0 1 0 0.46 1.00 -8178 LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) 300896 3 3 3 0 2 1 0 0 0 0 0.46 1.00 -8179 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 726880 6 5 5 0 0 4 2 0 0 0 0.46 1.00 -8180 RPL10L ribosomal protein L10-like 145376 2 2 2 1 2 0 0 0 0 0 0.46 1.00 -8181 PSG6 pregnancy specific beta-1-glycoprotein 6 290976 3 3 3 3 1 1 1 0 0 0 0.46 1.00 -8182 MEST mesoderm specific transcript homolog (mouse) 230792 3 2 3 0 2 1 0 0 0 0 0.46 1.00 -8183 TAZ tafazzin (cardiomyopathy, dilated 3A (X-linked); endocardial fibroelastosis 2; Barth syndrome) 186228 1 1 1 0 0 0 0 0 1 0 0.46 1.00 -8184 NLRC5 NLR family, CARD domain containing 5 1278624 9 7 9 6 0 2 4 0 3 0 0.46 1.00 -8185 DOPEY1 dopey family member 1 1690304 10 10 10 5 3 2 5 0 0 0 0.46 1.00 -8186 SMPDL3A sphingomyelin phosphodiesterase, acid-like 3A 286188 2 2 2 0 0 1 1 0 0 0 0.46 1.00 -8187 WASF1 WAS protein family, member 1 383488 3 3 3 0 2 0 1 0 0 0 0.46 1.00 -8188 COPS8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) 148288 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8189 EXPH5 exophilin 5 1342656 11 9 11 2 2 6 2 0 1 0 0.46 1.00 -8190 RPL35 ribosomal protein L35 85596 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -8191 SRP68 signal recognition particle 68kDa 429548 4 4 4 1 1 3 0 0 0 0 0.46 1.00 -8192 ACBD6 acyl-Coenzyme A binding domain containing 6 197344 2 2 2 0 2 0 0 0 0 0 0.46 1.00 -8193 C7orf27 chromosome 7 open reading frame 27 413600 3 3 3 1 0 1 1 0 1 0 0.46 1.00 -8194 RNASE6 ribonuclease, RNase A family, k6 102368 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -8195 GCFC1 601328 8 5 8 2 3 3 1 0 1 0 0.46 1.00 -8196 TBPL1 TBP-like 1 131040 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -8197 SHOC2 soc-2 suppressor of clear homolog (C. elegans) 398944 4 3 4 1 0 3 0 0 1 0 0.46 1.00 -8198 GALNT3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) 434000 4 2 4 0 1 0 1 0 2 0 0.46 1.00 -8199 NCOA1 nuclear receptor coactivator 1 997024 8 8 8 5 3 3 2 0 0 0 0.46 1.00 -8200 C1QTNF9B 227136 2 2 2 1 0 2 0 0 0 0 0.46 1.00 -8201 EXOC2 exocyst complex component 2 645792 7 5 7 2 3 2 2 0 0 0 0.46 1.00 -8202 HEATR3 HEAT repeat containing 3 422436 4 3 4 2 0 2 1 0 1 0 0.46 1.00 -8203 BUB3 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 230496 2 2 2 0 1 0 1 0 0 0 0.46 1.00 -8204 PARD6G par-6 partitioning defective 6 homolog gamma (C. elegans) 151508 2 2 2 2 1 0 1 0 0 0 0.46 1.00 -8205 FOXJ3 forkhead box J3 429408 3 3 3 1 1 1 1 0 0 0 0.46 1.00 -8206 NFE2L3 nuclear factor (erythroid-derived 2)-like 3 354928 3 3 3 1 1 0 1 0 1 0 0.47 1.00 -8207 INPP5F inositol polyphosphate-5-phosphatase F 752456 9 6 9 0 4 2 2 0 1 0 0.47 1.00 -8208 ASGR1 asialoglycoprotein receptor 1 203392 2 2 2 0 1 0 1 0 0 0 0.47 1.00 -8209 LHX6 LIM homeobox 6 218508 3 3 3 2 1 2 0 0 0 0 0.47 1.00 -8210 STK19 serine/threonine kinase 19 173880 2 2 2 1 1 0 1 0 0 0 0.47 1.00 -8211 NPC2 Niemann-Pick disease, type C2 106624 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -8212 LENG1 leukocyte receptor cluster (LRC) member 1 173936 2 2 2 0 1 0 1 0 0 0 0.47 1.00 -8213 SF3B14 88256 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -8214 ITGB6 integrin, beta 6 543648 6 4 6 2 2 2 1 0 1 0 0.47 1.00 -8215 OTUD6A OTU domain containing 6A 168272 2 2 2 1 2 0 0 0 0 0 0.47 1.00 -8216 RPAP2 RNA polymerase II associated protein 2 410296 3 3 3 1 0 1 2 0 0 0 0.47 1.00 -8217 AURKA aurora kinase A 278656 2 2 2 1 0 2 0 0 0 0 0.47 1.00 -8218 CHN2 chimerin (chimaerin) 2 324604 2 2 2 0 1 1 0 0 0 0 0.47 1.00 -8219 HSH2D hematopoietic SH2 domain containing 222384 2 2 2 0 2 0 0 0 0 0 0.47 1.00 -8220 MRPS14 mitochondrial ribosomal protein S14 89376 1 1 1 1 0 0 1 0 0 0 0.47 1.00 -8221 MORN3 MORN repeat containing 3 162216 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -8222 ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10 643524 5 5 5 1 1 1 0 1 2 0 0.47 1.00 -8223 RAB9A RAB9A, member RAS oncogene family 136640 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -8224 TMEM101 transmembrane protein 101 151076 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -8225 C6orf136 chromosome 6 open reading frame 136 196532 2 2 2 0 2 0 0 0 0 0 0.47 1.00 -8226 PI3 peptidase inhibitor 3, skin-derived (SKALP) 81088 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -8227 ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 225320 2 2 2 0 0 1 1 0 0 0 0.47 1.00 -8228 TRRAP transformation/transcription domain-associated protein 2626272 21 17 20 8 12 3 4 0 2 0 0.47 1.00 -8229 KLF12 Kruppel-like factor 12 277088 2 2 2 0 2 0 0 0 0 0 0.47 1.00 -8230 RBAK RB-associated KRAB zinc finger 483980 3 3 3 1 0 3 0 0 0 0 0.47 1.00 -8231 ACSM1 acyl-CoA synthetase medium-chain family member 1 400064 5 4 5 2 2 1 2 0 0 0 0.47 1.00 -8232 C19orf55 chromosome 19 open reading frame 55 242236 3 3 3 1 0 2 0 1 0 0 0.47 1.00 -8233 SLC25A35 solute carrier family 25, member 35 200928 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -8234 YAP1 Yes-associated protein 1, 65kDa 311808 2 2 2 1 1 0 0 0 1 0 0.47 1.00 -8235 HAP1 huntingtin-associated protein 1 (neuroan 1) 398748 3 3 3 1 0 2 1 0 0 0 0.47 1.00 -8236 CD5 CD5 molecule 332812 4 3 4 0 1 0 3 0 0 0 0.47 1.00 -8237 CST9L cystatin 9-like 102144 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -8238 KIF15 kinesin family member 15 964768 5 5 5 1 1 1 3 0 0 0 0.47 1.00 -8239 FAM109B family with sequence similarity 109, member B 159236 2 2 2 0 1 1 0 0 0 0 0.47 1.00 -8240 ANO6 630112 5 4 5 3 1 3 0 0 1 0 0.47 1.00 -8241 PDE3A phosphodiesterase 3A, cGMP-inhibited 701076 5 5 5 2 3 0 0 1 1 0 0.47 1.00 -8242 EML2 echinoderm microtubule associated protein like 2 446696 4 4 4 3 3 1 0 0 0 0 0.47 1.00 -8243 C9orf68 chromosome 9 open reading frame 68 233184 2 1 2 0 0 1 0 0 1 0 0.47 1.00 -8244 H6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 512372 4 4 4 1 2 1 0 0 1 0 0.47 1.00 -8245 OR8H3 olfactory receptor, family 8, subfamily H, member 3 211232 2 2 2 1 0 1 1 0 0 0 0.47 1.00 -8246 MYO9A myosin IXA 1746672 22 12 20 8 11 5 6 0 0 0 0.47 1.00 -8247 BAG2 BCL2-associated athanogene 2 144064 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -8248 COCH coagulation factor C homolog, cochlin (Limulus polyphemus) 372540 2 2 2 1 1 1 0 0 0 0 0.47 1.00 -8249 LIMK2 LIM domain kinase 2 533484 5 5 5 2 2 1 1 0 1 0 0.47 1.00 -8250 TMSL3 thymosin-like 3 61236 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -8251 ZFC3H1 1361584 11 7 11 0 0 4 4 0 3 0 0.47 1.00 -8252 NBEAL1 neurobeachin-like 1 972384 8 8 8 0 2 2 4 0 0 0 0.47 1.00 -8253 ADAM33 ADAM metallopeptidase domain 33 419068 3 3 3 0 1 1 0 0 1 0 0.47 1.00 -8254 ANKFY1 ankyrin repeat and FYVE domain containing 1 798632 9 8 9 2 6 2 1 0 0 0 0.47 1.00 -8255 LPXN leupaxin 268128 2 2 2 0 1 1 0 0 0 0 0.47 1.00 -8256 RNF32 ring finger protein 32 251104 2 2 2 0 1 0 0 0 1 0 0.47 1.00 -8257 SMTNL1 smoothelin-like 1 332704 2 2 2 0 0 1 1 0 0 0 0.47 1.00 -8258 RALA v-ral simian leukemia viral oncogene homolog A (ras related) 142688 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -8259 WDR77 WD repeat domain 77 219376 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -8260 ZCCHC3 zinc finger, CCHC domain containing 3 153244 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -8261 PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 598528 4 4 4 1 1 2 1 0 0 0 0.47 1.00 -8262 SULT2A1 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 197568 2 2 2 0 0 2 0 0 0 0 0.47 1.00 -8263 RPGR retinitis pigmentosa GTPase regulator 741792 4 4 4 0 2 1 0 0 1 0 0.47 1.00 -8264 BCS1L BCS1-like (yeast) 286748 2 2 2 0 0 0 2 0 0 0 0.47 1.00 -8265 OR10Q1 olfactory receptor, family 10, subfamily Q, member 1 215936 2 2 2 0 1 1 0 0 0 0 0.47 1.00 -8266 E2F3 E2F transcription factor 3 283808 2 2 2 0 0 0 2 0 0 0 0.47 1.00 -8267 NSL1 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) 193200 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -8268 PYROXD1 pyridine nucleotide-disulphide oxidoreductase domain 1 347424 2 2 2 2 0 0 1 0 1 0 0.47 1.00 -8269 ACADL acyl-Coenzyme A dehydrogenase, long chain 281344 2 2 2 0 2 0 0 0 0 0 0.47 1.00 -8270 BFSP2 beaded filament structural protein 2, phakinin 284396 2 2 2 0 0 0 2 0 0 0 0.47 1.00 -8271 RGS12 regulator of G-protein signaling 12 915456 7 7 7 2 1 1 2 0 3 0 0.47 1.00 -8272 IL1RL2 interleukin 1 receptor-like 2 396928 4 4 4 2 1 2 1 0 0 0 0.47 1.00 -8273 VSTM2A V-set and transmembrane domain containing 2A 145432 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -8274 CSN3 casein kappa 125664 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -8275 GSG1L GSG1-like 137312 2 2 2 1 2 0 0 0 0 0 0.47 1.00 -8276 ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial 406560 3 3 3 1 0 1 2 0 0 0 0.47 1.00 -8277 CD1C CD1c molecule 229824 1 1 1 3 1 0 0 0 0 0 0.47 1.00 -8278 GPR128 G protein-coupled receptor 128 550592 5 4 5 4 0 3 1 0 1 0 0.47 1.00 -8279 PPPDE1 133084 2 1 2 0 0 1 0 0 1 0 0.47 1.00 -8280 KIAA0586 KIAA0586 944112 9 7 9 1 2 6 1 0 0 0 0.47 1.00 -8281 KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 2 302400 2 2 2 1 1 1 0 0 0 0 0.47 1.00 -8282 IFIH1 interferon induced with helicase C domain 1 702968 5 4 5 1 2 1 1 0 1 0 0.47 1.00 -8283 DHRS1 dehydrogenase/reductase (SDR family) member 1 218176 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -8284 APLP2 amyloid beta (A4) precursor-like protein 2 505120 6 5 6 0 3 1 2 0 0 0 0.47 1.00 -8285 DENND5A 860832 7 5 7 0 3 2 2 0 0 0 0.47 1.00 -8286 ATP13A4 ATPase type 13A4 831264 8 6 8 2 2 4 2 0 0 0 0.47 1.00 -8287 TFR2 transferrin receptor 2 495688 3 3 3 2 2 0 0 0 1 0 0.47 1.00 -8288 MLANA melan-A 83552 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -8289 APBB3 amyloid beta (A4) precursor protein-binding, family B, member 3 335748 3 3 3 0 0 2 1 0 0 0 0.47 1.00 -8290 GPR75 G protein-coupled receptor 75 364448 2 2 2 2 1 0 1 0 0 0 0.47 1.00 -8291 OR10K1 olfactory receptor, family 10, subfamily K, member 1 211904 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -8292 FAM55D family with sequence similarity 55, member D 370720 5 3 5 2 1 3 1 0 0 0 0.47 1.00 -8293 DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 317184 3 3 3 0 1 1 1 0 0 0 0.47 1.00 -8294 RNF10 ring finger protein 10 547372 4 4 4 1 1 2 1 0 0 0 0.47 1.00 -8295 RNFT1 ring finger protein, transmembrane 1 300300 2 2 2 0 0 0 2 0 0 0 0.47 1.00 -8296 IRX5 iroquois homeobox 5 219100 3 3 3 3 2 0 1 0 0 0 0.47 1.00 -8297 AKAP14 A kinase (PRKA) anchor protein 14 139552 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -8298 PNN pinin, desmosome associated protein 490560 5 4 5 0 1 1 1 0 2 0 0.47 1.00 -8299 IL1RL1 interleukin 1 receptor-like 1 387072 3 3 3 1 0 2 1 0 0 0 0.47 1.00 -8300 OR5T3 olfactory receptor, family 5, subfamily T, member 3 230048 3 2 3 0 0 3 0 0 0 0 0.47 1.00 -8301 C10orf46 chromosome 10 open reading frame 46 235096 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -8302 OR2T1 olfactory receptor, family 2, subfamily T, member 1 249536 1 1 1 4 0 0 1 0 0 0 0.47 1.00 -8303 C9orf50 chromosome 9 open reading frame 50 189336 2 2 2 0 0 2 0 0 0 0 0.47 1.00 -8304 AZI2 5-azacytidine induced 2 270368 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -8305 MMADHC 205856 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -8306 RSL24D1 115584 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -8307 PDGFRB platelet-derived growth factor receptor, beta polypeptide 749756 6 6 6 5 3 1 1 0 1 0 0.47 1.00 -8308 CYP4F8 cytochrome P450, family 4, subfamily F, polypeptide 8 360640 4 3 4 2 0 3 0 0 1 0 0.47 1.00 -8309 COQ10B coenzyme Q10 homolog B (S. cerevisiae) 165088 2 2 2 0 1 1 0 0 0 0 0.47 1.00 -8310 OR51S1 olfactory receptor, family 51, subfamily S, member 1 218624 2 2 2 1 1 1 0 0 0 0 0.47 1.00 -8311 TRIM36 tripartite motif-containing 36 555072 4 4 4 0 2 2 0 0 0 0 0.47 1.00 -8312 IL12B interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40) 226464 2 2 2 4 0 2 0 0 0 0 0.47 1.00 -8313 ZNF17 zinc finger protein 17 448224 3 3 3 0 2 1 0 0 0 0 0.47 1.00 -8314 IDS iduronate 2-sulfatase (Hunter syndrome) 368192 2 2 2 0 0 0 1 0 1 0 0.47 1.00 -8315 SEC62 270528 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -8316 STAR steroidogenic acute regulatory protein 198464 1 1 1 2 0 0 0 0 1 0 0.47 1.00 -8317 WNT9A wingless-type MMTV integration site family, member 9A 175224 2 2 2 0 1 0 0 0 1 0 0.47 1.00 -8318 PLIN1 262672 3 3 3 0 1 2 0 0 0 0 0.47 1.00 -8319 IFNG interferon, gamma 115808 1 1 1 2 0 1 0 0 0 0 0.47 1.00 -8320 TRAF3IP2 TRAF3 interacting protein 2 387520 3 3 3 0 1 2 0 0 0 0 0.47 1.00 -8321 CHST1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 266504 7 5 7 3 7 0 0 0 0 0 0.47 1.00 -8322 CCDC54 coiled-coil domain containing 54 221984 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -8323 SCAMP2 secretory carrier membrane protein 2 221528 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -8324 SNAP91 synaptosomal-associated protein, 91kDa homolog (mouse) 545288 6 4 6 1 1 2 2 0 1 0 0.47 1.00 -8325 C14orf28 chromosome 14 open reading frame 28 212576 2 2 2 1 0 2 0 0 0 0 0.47 1.00 -8326 ZNF665 zinc finger protein 665 458976 8 4 8 3 1 6 1 0 0 0 0.47 1.00 -8327 FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) 225428 4 3 4 2 4 0 0 0 0 0 0.47 1.00 -8328 PHB prohibitin 180724 2 2 2 0 1 0 1 0 0 0 0.47 1.00 -8329 C11orf24 chromosome 11 open reading frame 24 304192 2 2 2 1 1 1 0 0 0 0 0.47 1.00 -8330 GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 863520 7 6 7 1 2 3 1 0 1 0 0.47 1.00 -8331 CHRNA2 cholinergic receptor, nicotinic, alpha 2 (neuronal) 354872 5 5 5 3 2 2 1 0 0 0 0.47 1.00 -8332 DPF3 D4, zinc and double PHD fingers, family 3 248640 3 3 3 2 1 2 0 0 0 0 0.47 1.00 -8333 GDF11 growth differentiation factor 11 218988 3 3 3 0 2 1 0 0 0 0 0.47 1.00 -8334 NAPB N-ethylmaleimide-sensitive factor attachment protein, beta 195752 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -8335 CST7 cystatin F (leukocystatin) 101696 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -8336 CAB39L calcium binding protein 39-like 234304 2 2 2 2 0 1 0 0 1 0 0.47 1.00 -8337 LHFPL1 lipoma HMGIC fusion partner-like 1 151200 1 1 1 1 0 0 1 0 0 0 0.47 1.00 -8338 CST1 cystatin SN 98112 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -8339 TMEM56 transmembrane protein 56 182784 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -8340 UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 359520 3 3 3 0 0 2 1 0 0 0 0.47 1.00 -8341 STAM2 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 366016 2 2 2 2 0 1 1 0 0 0 0.47 1.00 -8342 HIST2H2BF histone cluster 2, H2bf 86240 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -8343 COL27A1 collagen, type XXVII, alpha 1 1226108 13 8 13 4 8 1 1 0 3 0 0.47 1.00 -8344 ITPR1 inositol 1,4,5-triphosphate receptor, type 1 1842760 19 12 19 6 8 7 3 0 1 0 0.47 1.00 -8345 KDR kinase insert domain receptor (a type III receptor tyrosine kinase) 938784 10 9 10 5 5 3 2 0 0 0 0.47 1.00 -8346 BAT2L2 1797240 13 11 13 2 6 2 3 0 2 0 0.47 1.00 -8347 C19orf63 chromosome 19 open reading frame 63 166940 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -8348 P2RY13 purinergic receptor P2Y, G-protein coupled, 13 227584 2 2 2 0 0 2 0 0 0 0 0.47 1.00 -8349 KLHDC1 kelch domain containing 1 280784 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -8350 IFNGR2 interferon gamma receptor 2 (interferon gamma transducer 1) 216160 2 2 2 0 1 0 0 0 1 0 0.47 1.00 -8351 OPN4 opsin 4 275744 3 3 3 0 0 3 0 0 0 0 0.47 1.00 -8352 MYST3 MYST histone acetyltransferase (monocytic leukemia) 3 1346056 18 11 18 2 12 3 3 0 0 0 0.47 1.00 -8353 C9orf152 chromosome 9 open reading frame 152 151200 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -8354 R3HDM2 R3H domain containing 2 441728 3 3 3 3 1 2 0 0 0 0 0.47 1.00 -8355 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 165928 2 2 2 1 0 2 0 0 0 0 0.47 1.00 -8356 DDI2 DDI1, DNA-damage inducible 1, homolog 2 (S. cerevisiae) 271572 2 2 2 0 0 1 1 0 0 0 0.47 1.00 -8357 DMGDH dimethylglycine dehydrogenase 573440 7 4 7 3 2 3 2 0 0 0 0.47 1.00 -8358 PCDHA12 protocadherin alpha 12 626276 7 7 6 1 5 2 0 0 0 0 0.47 1.00 -8359 AMIGO1 adhesion molecule with Ig-like domain 1 331604 3 3 3 3 1 2 0 0 0 0 0.47 1.00 -8360 RPS9 ribosomal protein S9 134456 2 2 2 1 2 0 0 0 0 0 0.48 1.00 -8361 CHST8 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 250824 3 3 3 0 3 0 0 0 0 0 0.48 1.00 -8362 PPP2R5C protein phosphatase 2, regulatory subunit B', gamma isoform 401496 3 3 2 0 0 2 0 0 1 0 0.48 1.00 -8363 FAM76A family with sequence similarity 76, member A 196000 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8364 RPL22L1 ribosomal protein L22-like 1 84336 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8365 PRICKLE3 prickle homolog 3 (Drosophila) 360160 3 3 3 0 2 0 0 0 1 0 0.48 1.00 -8366 PCDHA4 protocadherin alpha 4 641480 12 7 12 1 6 1 3 0 2 0 0.48 1.00 -8367 PRSS16 protease, serine, 16 (thymus) 337592 3 3 3 3 0 2 0 0 1 0 0.48 1.00 -8368 ZC3HAV1L zinc finger CCCH-type, antiviral 1-like 124096 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8369 ZNF33A zinc finger protein 33A 549248 6 4 6 2 2 2 1 0 1 0 0.48 1.00 -8370 REPS1 RALBP1 associated Eps domain containing 1 518336 5 4 5 0 3 0 0 0 2 0 0.48 1.00 -8371 CHFR checkpoint with forkhead and ring finger domains 359548 4 4 4 0 0 3 1 0 0 0 0.48 1.00 -8372 UNC5D unc-5 homolog D (C. elegans) 632352 9 4 9 5 2 4 1 0 2 0 0.48 1.00 -8373 ANG angiogenin, ribonuclease, RNase A family, 5 100352 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8374 ARHGAP29 Rho GTPase activating protein 29 867776 8 6 8 1 3 3 1 0 1 0 0.48 1.00 -8375 GLIPR1 GLI pathogenesis-related 1 (glioma) 184800 1 1 1 1 1 0 0 0 0 0 0.48 1.00 -8376 ASB1 ankyrin repeat and SOCS box-containing 1 218400 2 2 2 1 1 1 0 0 0 0 0.48 1.00 -8377 NOP14 588084 5 4 5 5 0 1 2 0 2 0 0.48 1.00 -8378 FAM63A family with sequence similarity 63, member A 326144 3 3 3 0 1 1 0 0 1 0 0.48 1.00 -8379 SGK1 serum/glucocorticoid regulated kinase 1 421344 4 4 4 2 0 2 2 0 0 0 0.48 1.00 -8380 ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) 811244 8 6 8 4 1 4 1 0 2 0 0.48 1.00 -8381 SUPT7L suppressor of Ty 7 (S. cerevisiae)-like 283360 2 2 2 0 1 1 0 0 0 0 0.48 1.00 -8382 SLC43A2 solute carrier family 43, member 2 323284 2 2 2 2 0 0 1 0 1 0 0.48 1.00 -8383 TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 193984 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8384 NF2 neurofibromin 2 (merlin) 388328 4 3 4 1 2 1 0 0 1 0 0.48 1.00 -8385 KLHL25 kelch-like 25 (Drosophila) 362684 4 4 4 0 2 1 0 0 1 0 0.48 1.00 -8386 SUGT1 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 236096 1 1 1 2 0 1 0 0 0 0 0.48 1.00 -8387 DNAJC22 227248 2 2 2 0 1 0 1 0 0 0 0.48 1.00 -8388 TRIL 275492 2 2 2 2 0 0 0 0 2 0 0.48 1.00 -8389 LIMS2 LIM and senescent cell antigen-like domains 2 211640 2 2 2 0 1 0 0 0 1 0 0.48 1.00 -8390 ANKRD32 ankyrin repeat domain 32 292768 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -8391 PSEN1 presenilin 1 (Alzheimer disease 3) 323456 3 3 3 0 2 1 0 0 0 0 0.48 1.00 -8392 CCDC144A coiled-coil domain containing 144A 795828 7 5 7 1 3 1 1 0 0 2 0.48 1.00 -8393 C7orf57 chromosome 7 open reading frame 57 196968 1 1 1 1 0 0 1 0 0 0 0.48 1.00 -8394 IDI2 isopentenyl-diphosphate delta isomerase 2 156800 1 1 1 2 0 0 0 0 1 0 0.48 1.00 -8395 LPCAT1 lysophosphatidylcholine acyltransferase 1 339248 3 3 3 2 1 2 0 0 0 0 0.48 1.00 -8396 GPR182 G protein-coupled receptor 182 273056 2 2 2 1 2 0 0 0 0 0 0.48 1.00 -8397 IMPACT Impact homolog (mouse) 216608 3 2 3 0 0 2 1 0 0 0 0.48 1.00 -8398 VWC2 von Willebrand factor C domain containing 2 105212 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8399 KRTAP10-8 keratin associated protein 10-8 175616 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8400 TMEM81 transmembrane protein 81 172928 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -8401 SRRD SRR1 domain containing 189416 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -8402 TMEM40 transmembrane protein 40 163976 1 1 1 2 0 0 1 0 0 0 0.48 1.00 -8403 DOCK4 dedicator of cytokinesis 4 1324224 12 9 12 0 5 3 2 0 2 0 0.48 1.00 -8404 PRPF19 PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) 350812 3 3 3 2 0 3 0 0 0 0 0.48 1.00 -8405 F8 coagulation factor VIII, procoagulant component (hemophilia A) 1600576 18 10 16 7 2 10 4 0 2 0 0.48 1.00 -8406 C2orf24 chromosome 2 open reading frame 24 269976 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -8407 FAM131A family with sequence similarity 131, member A 174328 1 1 1 1 0 0 0 1 0 0 0.48 1.00 -8408 GCDH glutaryl-Coenzyme A dehydrogenase 312844 5 4 5 0 3 1 0 1 0 0 0.48 1.00 -8409 TMEM154 transmembrane protein 154 129376 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -8410 NMRAL1 NmrA-like family domain containing 1 206080 2 2 2 1 2 0 0 0 0 0 0.48 1.00 -8411 FAM177A1 147016 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8412 TUBB8 249284 3 3 3 2 3 0 0 0 0 0 0.48 1.00 -8413 RFC4 replication factor C (activator 1) 4, 37kDa 253568 3 2 3 1 0 1 1 0 1 0 0.48 1.00 -8414 TXNDC2 thioredoxin domain-containing 2 (spermatozoa) 374080 3 2 3 0 1 0 0 0 2 0 0.48 1.00 -8415 RYR1 ryanodine receptor 1 (skeletal) 3191924 25 24 25 17 14 9 2 0 0 0 0.48 1.00 -8416 DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) 1048104 9 7 9 3 0 3 3 0 3 0 0.48 1.00 -8417 MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A 373632 2 2 2 1 0 1 1 0 0 0 0.48 1.00 -8418 L3MBTL2 l(3)mbt-like 2 (Drosophila) 467608 4 4 4 1 3 1 0 0 0 0 0.48 1.00 -8419 OR5K1 olfactory receptor, family 5, subfamily K, member 1 208544 3 2 3 0 1 2 0 0 0 0 0.48 1.00 -8420 CEP350 centrosomal protein 350kDa 2061268 9 7 8 3 1 3 1 1 3 0 0.48 1.00 -8421 ITGB8 integrin, beta 8 529984 5 5 5 2 1 1 3 0 0 0 0.48 1.00 -8422 SLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4 349312 4 4 4 3 2 1 1 0 0 0 0.48 1.00 -8423 MYBPC1 myosin binding protein C, slow type 828352 7 7 7 4 2 3 1 0 1 0 0.48 1.00 -8424 KLHL8 kelch-like 8 (Drosophila) 425376 2 2 2 1 1 0 0 0 1 0 0.48 1.00 -8425 C14orf148 chromosome 14 open reading frame 148 263200 2 2 2 1 0 2 0 0 0 0 0.48 1.00 -8426 NXPH1 neurexophilin 1 184576 3 2 3 1 1 2 0 0 0 0 0.48 1.00 -8427 ZPBP2 zona pellucida binding protein 2 234976 1 1 1 2 0 0 0 0 1 0 0.48 1.00 -8428 LIM2 lens intrinsic membrane protein 2, 19kDa 148736 1 1 1 2 0 1 0 0 0 0 0.48 1.00 -8429 CYTIP 249088 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -8430 MAT2A methionine adenosyltransferase II, alpha 274176 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -8431 LSM12 LSM12 homolog (S. cerevisiae) 118696 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -8432 LRRC16B leucine rich repeat containing 16B 897904 6 6 6 4 2 0 3 0 1 0 0.48 1.00 -8433 SH2D2A SH2 domain protein 2A 236656 2 2 2 0 0 1 0 0 1 0 0.48 1.00 -8434 SLC35C2 solute carrier family 35, member C2 254016 2 2 2 1 1 0 1 0 0 0 0.48 1.00 -8435 MCM5 minichromosome maintenance complex component 5 480484 6 5 6 1 4 2 0 0 0 0 0.48 1.00 -8436 C2orf71 858828 9 6 9 2 2 5 1 0 1 0 0.48 1.00 -8437 C3orf54 chromosome 3 open reading frame 54 148644 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8438 C6orf25 chromosome 6 open reading frame 25 172200 2 2 2 0 1 1 0 0 0 0 0.48 1.00 -8439 RAB4A RAB4A, member RAS oncogene family 145600 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8440 PUM1 pumilio homolog 1 (Drosophila) 817824 6 5 6 2 3 2 0 0 1 0 0.48 1.00 -8441 SDC4 syndecan 4 135104 1 1 1 1 1 0 0 0 0 0 0.48 1.00 -8442 B3GNT9 146480 2 2 2 0 2 0 0 0 0 0 0.48 1.00 -8443 SGK3 serum/glucocorticoid regulated kinase family, member 3 348320 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -8444 KIAA0528 KIAA0528 694176 8 5 7 3 2 3 3 0 0 0 0.48 1.00 -8445 KCTD9 potassium channel tetramerisation domain containing 9 268464 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -8446 DNAJC17 DnaJ (Hsp40) homolog, subfamily C, member 17 214816 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -8447 RAB3A RAB3A, member RAS oncogene family 152096 2 2 2 0 2 0 0 0 0 0 0.48 1.00 -8448 C14orf1 chromosome 14 open reading frame 1 98336 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8449 ACOX1 acyl-Coenzyme A oxidase 1, palmitoyl 493696 3 3 3 0 1 0 1 1 0 0 0.48 1.00 -8450 C10orf78 chromosome 10 open reading frame 78 166584 1 1 1 1 0 0 0 0 1 0 0.48 1.00 -8451 NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 627956 6 6 6 3 4 2 0 0 0 0 0.48 1.00 -8452 UTP23 166744 1 1 1 1 0 0 0 0 1 0 0.48 1.00 -8453 ZNF699 zinc finger protein 699 436072 4 4 3 1 0 3 1 0 0 0 0.48 1.00 -8454 FRS3 fibroblast growth factor receptor substrate 3 292036 2 2 2 0 0 0 2 0 0 0 0.48 1.00 -8455 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 585648 6 6 4 3 5 1 0 0 0 0 0.48 1.00 -8456 TNFAIP8 tumor necrosis factor, alpha-induced protein 8 129128 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -8457 GGH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) 208740 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8458 CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1 351680 3 2 3 0 1 0 1 0 1 0 0.48 1.00 -8459 TTC3 tetratricopeptide repeat domain 3 1401792 17 7 17 0 2 7 4 0 4 0 0.48 1.00 -8460 C16orf63 chromosome 16 open reading frame 63 122080 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8461 NRD1 nardilysin (N-arginine dibasic convertase) 849408 4 4 4 2 0 1 1 0 2 0 0.48 1.00 -8462 ITGB5 integrin, beta 5 534464 6 5 6 2 1 3 1 0 1 0 0.48 1.00 -8463 GRASP GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein 131880 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -8464 EPHA2 EPH receptor A2 638640 5 5 5 2 2 0 1 0 2 0 0.48 1.00 -8465 SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 579488 4 4 4 2 0 1 3 0 0 0 0.48 1.00 -8466 C1orf104 chromosome 1 open reading frame 104 160160 2 2 2 0 2 0 0 0 0 0 0.48 1.00 -8467 SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 488376 4 4 4 4 2 2 0 0 0 0 0.48 1.00 -8468 NT5E 5'-nucleotidase, ecto (CD73) 380428 3 3 3 1 2 1 0 0 0 0 0.48 1.00 -8469 TMEM70 transmembrane protein 70 153160 1 1 1 1 0 0 0 0 1 0 0.48 1.00 -8470 EIF4E1B eukaryotic translation initiation factor 4E family member 1B 156784 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8471 VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) 925888 10 6 10 0 0 6 4 0 0 0 0.48 1.00 -8472 NOS1 nitric oxide synthase 1 (neuronal) 989156 11 8 11 9 4 7 0 0 0 0 0.48 1.00 -8473 GRIK1 glutamate receptor, ionotropic, kainate 1 668368 5 5 5 6 2 2 1 0 0 0 0.48 1.00 -8474 YIPF3 Yip1 domain family, member 3 242576 2 2 2 0 1 0 1 0 0 0 0.48 1.00 -8475 MRPS22 mitochondrial ribosomal protein S22 249760 2 2 2 0 0 0 1 0 1 0 0.48 1.00 -8476 PEAR1 platelet endothelial aggregation receptor 1 699032 5 5 5 1 2 2 0 1 0 0 0.48 1.00 -8477 ZNF789 zinc finger protein 789 299264 4 2 4 0 1 2 0 0 1 0 0.48 1.00 -8478 PID1 phosphotyrosine interaction domain containing 1 141568 1 1 1 4 0 1 0 0 0 0 0.48 1.00 -8479 GJD4 gap junction protein, delta 4, 40.1kDa 140484 2 2 2 1 2 0 0 0 0 0 0.48 1.00 -8480 DCAF12L1 295148 3 3 3 1 1 1 1 0 0 0 0.48 1.00 -8481 TAAR8 trace amine associated receptor 8 231392 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -8482 DCDC2B doublecortin domain containing 2B 229664 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8483 DOCK11 dedicator of cytokinesis 11 1417472 10 7 10 7 2 4 3 0 1 0 0.48 1.00 -8484 HHIP hedgehog interacting protein 482720 5 4 5 0 1 0 4 0 0 0 0.48 1.00 -8485 PIR pirin (iron-binding nuclear protein) 203616 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8486 CWC15 CWC15 homolog (S. cerevisiae) 145568 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8487 PPP5C protein phosphatase 5, catalytic subunit 341716 4 4 4 2 1 2 0 0 1 0 0.48 1.00 -8488 FAM3B family with sequence similarity 3, member B 160608 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -8489 TRAPPC6B trafficking protein particle complex 6B 112224 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -8490 BLOC1S1 biogenesis of lysosome-related organelles complex-1, subunit 1 88256 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8491 SLC1A7 solute carrier family 1 (glutamate transporter), member 7 383584 2 2 2 2 0 0 0 0 2 0 0.48 1.00 -8492 JAKMIP3 janus kinase and microtubule interacting protein 3 446264 6 5 6 1 4 1 1 0 0 0 0.48 1.00 -8493 HDAC3 histone deacetylase 3 301728 2 2 2 0 1 0 1 0 0 0 0.48 1.00 -8494 RNASE8 ribonuclease, RNase A family, 8 105056 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -8495 PITPNM3 PITPNM family member 3 617384 8 7 8 1 2 5 0 1 0 0 0.48 1.00 -8496 BST2 bone marrow stromal cell antigen 2 125216 1 1 1 1 1 0 0 0 0 0 0.48 1.00 -8497 MDM4 Mdm4 p53 binding protein homolog (mouse) 329252 3 3 3 0 2 0 1 0 0 0 0.48 1.00 -8498 KIAA0196 KIAA0196 804608 4 4 4 3 0 1 2 0 1 0 0.49 1.00 -8499 ZNF323 zinc finger protein 323 276024 2 2 2 0 2 0 0 0 0 0 0.49 1.00 -8500 KPNA4 karyopherin alpha 4 (importin alpha 3) 362888 3 3 2 1 2 1 0 0 0 0 0.49 1.00 -8501 LAMA4 laminin, alpha 4 1289040 11 9 10 5 3 4 3 0 1 0 0.49 1.00 -8502 IFNGR1 interferon gamma receptor 1 335552 3 3 3 0 1 1 1 0 0 0 0.49 1.00 -8503 HPS3 Hermansky-Pudlak syndrome 3 666848 5 5 4 1 3 1 0 0 1 0 0.49 1.00 -8504 WNT16 wingless-type MMTV integration site family, member 16 261052 2 2 2 1 0 1 0 0 1 0 0.49 1.00 -8505 C5orf15 chromosome 5 open reading frame 15 178752 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -8506 HAUS2 150776 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -8507 NUMBL numb homolog (Drosophila)-like 296720 3 3 3 2 2 1 0 0 0 0 0.49 1.00 -8508 RFESD Rieske (Fe-S) domain containing 109088 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -8509 MEP1B meprin A, beta 485184 4 4 4 2 1 0 3 0 0 0 0.49 1.00 -8510 KLHL34 kelch-like 34 (Drosophila) 252072 1 1 1 2 0 0 0 0 1 0 0.49 1.00 -8511 PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 315868 4 3 3 0 2 1 0 0 1 0 0.49 1.00 -8512 CD69 CD69 molecule 138880 1 1 1 2 0 1 0 0 0 0 0.49 1.00 -8513 TUBA4A tubulin, alpha 4a 304360 3 3 3 0 1 2 0 0 0 0 0.49 1.00 -8514 PRC1 protein regulator of cytokinesis 1 430752 4 3 4 3 1 1 0 0 2 0 0.49 1.00 -8515 SRFBP1 serum response factor binding protein 1 296128 4 2 4 1 0 2 1 0 1 0 0.49 1.00 -8516 UCHL5 ubiquitin carboxyl-terminal hydrolase L5 231616 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8517 BBS10 Bardet-Biedl syndrome 10 488320 2 2 2 2 0 2 0 0 0 0 0.49 1.00 -8518 CCKAR cholecystokinin A receptor 292768 3 3 3 2 1 1 1 0 0 0 0.49 1.00 -8519 IL20RB interleukin 20 receptor beta 215936 1 1 1 2 0 1 0 0 0 0 0.49 1.00 -8520 AKR1D1 aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) 227808 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8521 DAK dihydroxyacetone kinase 2 homolog (S. cerevisiae) 374048 4 4 4 1 2 2 0 0 0 0 0.49 1.00 -8522 TEX13B testis expressed 13B 212128 2 2 2 2 2 0 0 0 0 0 0.49 1.00 -8523 SPARCL1 SPARC-like 1 (mast9, hevin) 455840 3 3 3 2 1 1 1 0 0 0 0.49 1.00 -8524 ABHD4 abhydrolase domain containing 4 233096 3 2 3 0 3 0 0 0 0 0 0.49 1.00 -8525 ARAP1 866580 7 6 7 5 4 1 1 0 1 0 0.49 1.00 -8526 AVPR1A arginine vasopressin receptor 1A 267820 4 4 4 2 3 0 0 0 1 0 0.49 1.00 -8527 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 600544 3 3 3 0 1 1 0 0 1 0 0.49 1.00 -8528 TMCO6 transmembrane and coiled-coil domains 6 319792 3 3 3 1 2 1 0 0 0 0 0.49 1.00 -8529 ORM1 orosomucoid 1 140984 2 2 2 2 2 0 0 0 0 0 0.49 1.00 -8530 ZBTB20 zinc finger and BTB domain containing 20 453600 5 5 5 3 3 1 0 0 1 0 0.49 1.00 -8531 OR13H1 olfactory receptor, family 13, subfamily H, member 1 208544 3 2 3 0 1 0 2 0 0 0 0.49 1.00 -8532 KIF13B kinesin family member 13B 1081444 10 8 10 3 2 5 1 1 1 0 0.49 1.00 -8533 CCDC126 coiled-coil domain containing 126 96544 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8534 KIF3B kinesin family member 3B 509824 4 4 4 1 0 2 1 0 1 0 0.49 1.00 -8535 SYNM 870776 7 6 7 1 1 0 2 0 4 0 0.49 1.00 -8536 PYDC1 PYD (pyrin domain) containing 1 56672 2 1 2 0 2 0 0 0 0 0 0.49 1.00 -8537 NDUFS5 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) 73696 2 1 2 0 1 1 0 0 0 0 0.49 1.00 -8538 TTLL6 tubulin tyrosine ligase-like family, member 6 392448 3 3 3 2 0 2 1 0 0 0 0.49 1.00 -8539 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 105560 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -8540 SPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) 217056 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -8541 COPB2 coatomer protein complex, subunit beta 2 (beta prime) 629216 5 5 5 0 1 3 1 0 0 0 0.49 1.00 -8542 ATP5S ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B) 151872 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -8543 CYGB cytoglobin 127584 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8544 ALCAM activated leukocyte cell adhesion molecule 405888 2 2 2 1 0 0 1 0 1 0 0.49 1.00 -8545 OR4C3 olfactory receptor, family 4, subfamily C, member 3 222656 2 2 2 0 0 2 0 0 0 0 0.49 1.00 -8546 SLC35D3 solute carrier family 35, member D3 202628 2 2 2 1 1 1 0 0 0 0 0.49 1.00 -8547 C14orf129 chromosome 14 open reading frame 129 95872 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -8548 RPS15A ribosomal protein S15a 91616 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -8549 GALNT1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) 386176 3 2 3 0 1 0 1 0 1 0 0.49 1.00 -8550 PRPF8 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) 1598688 11 10 11 2 5 3 1 0 2 0 0.49 1.00 -8551 USP21 ubiquitin specific peptidase 21 391104 4 4 4 1 1 2 1 0 0 0 0.49 1.00 -8552 FREM1 FRAS1 related extracellular matrix 1 1481464 16 9 16 7 4 7 2 1 2 0 0.49 1.00 -8553 OR2AG2 olfactory receptor, family 2, subfamily AG, member 2 213920 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -8554 RPL32 ribosomal protein L32 94080 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -8555 OR5M1 olfactory receptor, family 5, subfamily M, member 1 212704 2 2 2 0 1 0 1 0 0 0 0.49 1.00 -8556 PAQR7 progestin and adipoQ receptor family member VII 231728 2 2 2 0 1 0 0 0 1 0 0.49 1.00 -8557 PLS1 plastin 1 (I isoform) 436800 2 2 2 4 0 0 2 0 0 0 0.49 1.00 -8558 ZNF511 zinc finger protein 511 131180 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -8559 HOXB7 homeobox B7 96572 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -8560 SHF Src homology 2 domain containing F 271344 3 3 3 0 3 0 0 0 0 0 0.49 1.00 -8561 C9orf106 chromosome 9 open reading frame 106 137212 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8562 FAM45A family with sequence similarity 45, member A 235424 2 2 2 0 1 1 0 0 0 0 0.49 1.00 -8563 FAM21B family with sequence similarity 21, member B 479124 2 2 2 1 0 0 0 0 2 0 0.49 1.00 -8564 NQO1 NAD(P)H dehydrogenase, quinone 1 190176 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -8565 VIL1 villin 1 573440 4 4 4 0 1 2 0 0 1 0 0.49 1.00 -8566 ZMYM1 zinc finger, MYM-type 1 768180 4 4 4 1 0 3 0 0 1 0 0.49 1.00 -8567 GEMIN5 gem (nuclear organelle) associated protein 5 1021884 9 7 9 1 2 2 5 0 0 0 0.49 1.00 -8568 MAPK14 mitogen-activated protein kinase 14 284032 3 3 3 1 1 2 0 0 0 0 0.49 1.00 -8569 GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A 688800 6 5 6 6 3 3 0 0 0 0 0.49 1.00 -8570 GPR176 G protein-coupled receptor 176 319960 2 2 2 1 1 1 0 0 0 0 0.49 1.00 -8571 OR4K17 olfactory receptor, family 4, subfamily K, member 17 232064 3 2 3 1 0 2 1 0 0 0 0.49 1.00 -8572 PDE4A phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) 580076 4 4 4 0 1 2 0 0 1 0 0.49 1.00 -8573 YAF2 YY1 associated factor 2 112140 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -8574 INHA inhibin, alpha 234892 2 2 2 0 0 1 1 0 0 0 0.49 1.00 -8575 CPA4 carboxypeptidase A4 293440 2 2 2 1 0 0 1 0 1 0 0.49 1.00 -8576 MAP1LC3C microtubule-associated protein 1 light chain 3 gamma 103040 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -8577 STK38L serine/threonine kinase 38 like 324128 3 3 3 0 0 1 2 0 0 0 0.49 1.00 -8578 NUDT16L1 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 90916 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -8579 LYST lysosomal trafficking regulator 2600640 24 15 24 4 6 9 7 0 2 0 0.49 1.00 -8580 CDKL3 cyclin-dependent kinase-like 3 385528 3 3 3 2 1 1 1 0 0 0 0.49 1.00 -8581 ZNF514 zinc finger protein 514 272160 2 2 2 2 0 2 0 0 0 0 0.49 1.00 -8582 BCAS1 breast carcinoma amplified sequence 1 402976 3 3 3 0 0 3 0 0 0 0 0.49 1.00 -8583 RSC1A1 regulatory solute carrier protein, family 1, member 1 416192 2 2 2 1 1 0 0 0 1 0 0.49 1.00 -8584 GTPBP8 GTP-binding protein 8 (putative) 193536 1 1 1 1 0 0 0 0 1 0 0.49 1.00 -8585 CD1B CD1b molecule 229824 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -8586 DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 200256 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -8587 GPLD1 glycosylphosphatidylinositol specific phospholipase D1 596600 6 5 5 5 4 0 2 0 0 0 0.49 1.00 -8588 IL6R interleukin 6 receptor 304192 3 3 3 1 2 1 0 0 0 0 0.49 1.00 -8589 MRPS18B mitochondrial ribosomal protein S18B 129584 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8590 AK7 adenylate kinase 7 500344 6 4 6 3 3 1 2 0 0 0 0.49 1.00 -8591 PRR23B 143892 3 3 3 0 3 0 0 0 0 0 0.49 1.00 -8592 CSNK1A1 casein kinase 1, alpha 1 254312 2 2 2 0 2 0 0 0 0 0 0.49 1.00 -8593 TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 306996 5 4 5 0 3 2 0 0 0 0 0.49 1.00 -8594 OR13C2 olfactory receptor, family 13, subfamily C, member 2 215264 4 2 4 0 0 4 0 0 0 0 0.49 1.00 -8595 KCNJ8 potassium inwardly-rectifying channel, subfamily J, member 8 287392 4 3 4 2 3 0 0 0 1 0 0.49 1.00 -8596 ATP6V0C ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c 93924 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -8597 C3orf72 85064 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8598 KLF17 Kruppel-like factor 17 264684 1 1 1 0 0 0 0 0 1 0 0.49 1.00 -8599 RNF214 ring finger protein 214 480844 5 4 5 1 0 3 1 0 1 0 0.49 1.00 -8600 NPTN neuroplastin 267316 2 2 2 0 1 1 0 0 0 0 0.49 1.00 -8601 TET2 tet oncogene family member 2 784448 6 4 6 5 1 2 0 0 1 2 0.49 1.00 -8602 SV2C synaptic vesicle glycoprotein 2C 499968 4 4 4 1 0 1 3 0 0 0 0.49 1.00 -8603 C8orf85 77056 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -8604 TSPAN14 tetraspanin 14 167384 1 1 1 1 0 0 1 0 0 0 0.49 1.00 -8605 MEX3C mex-3 homolog C (C. elegans) 304736 2 2 2 0 0 1 1 0 0 0 0.49 1.00 -8606 CHAT choline acetyltransferase 472184 6 5 6 5 2 3 1 0 0 0 0.49 1.00 -8607 C10orf28 chromosome 10 open reading frame 28 528864 3 3 3 1 0 1 1 0 1 0 0.49 1.00 -8608 DOCK5 dedicator of cytokinesis 5 1265768 11 10 10 2 5 4 1 0 1 0 0.49 1.00 -8609 HIST1H4A histone cluster 1, H4a 70784 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -8610 NOTCH4 Notch homolog 4 (Drosophila) 975132 7 6 7 3 3 2 0 0 2 0 0.49 1.00 -8611 MIOX myo-inositol oxygenase 166544 1 1 1 0 0 0 0 0 1 0 0.49 1.00 -8612 DISP2 dispatched homolog 2 (Drosophila) 799400 7 7 7 0 5 1 0 0 1 0 0.49 1.00 -8613 GPR52 G protein-coupled receptor 52 244160 3 2 3 0 1 1 1 0 0 0 0.49 1.00 -8614 LIPA lipase A, lysosomal acid, cholesterol esterase (Wolman disease) 276864 1 1 1 1 0 0 0 0 1 0 0.49 1.00 -8615 PDLIM4 PDZ and LIM domain 4 199248 2 2 2 0 1 0 0 0 1 0 0.49 1.00 -8616 ASB3 ankyrin repeat and SOCS box-containing 3 356832 2 2 2 3 0 0 1 1 0 0 0.49 1.00 -8617 ZNF35 zinc finger protein 35 357504 2 2 2 1 1 1 0 0 0 0 0.49 1.00 -8618 PFN2 profilin 2 101440 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -8619 PRSS42 131320 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -8620 LMBR1 limb region 1 homolog (mouse) 339304 2 2 2 0 0 1 0 0 1 0 0.49 1.00 -8621 TMEM147 transmembrane protein 147 153356 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -8622 NEUROD1 neurogenic differentiation 1 240800 3 3 3 3 2 1 0 0 0 0 0.49 1.00 -8623 TEAD4 TEA domain family member 4 301588 3 3 3 0 1 1 1 0 0 0 0.49 1.00 -8624 TLR4 toll-like receptor 4 567168 10 4 10 2 2 2 5 0 1 0 0.49 1.00 -8625 TRAPPC9 768400 7 7 7 1 2 3 2 0 0 0 0.49 1.00 -8626 DNAJC2 433080 2 2 2 4 1 0 0 0 1 0 0.49 1.00 -8627 FANCC Fanconi anemia, complementation group C 388192 3 3 3 1 2 0 1 0 0 0 0.50 1.00 -8628 SORL1 sortilin-related receptor, L(DLR class) A repeats-containing 1467312 11 10 11 1 5 2 4 0 0 0 0.50 1.00 -8629 SLC5A7 solute carrier family 5 (choline transporter), member 7 397600 3 3 3 2 0 3 0 0 0 0 0.50 1.00 -8630 PRSS22 protease, serine, 22 182916 2 2 2 0 0 1 0 1 0 0 0.50 1.00 -8631 NEFM neurofilament, medium polypeptide 150kDa 518160 5 5 5 0 2 3 0 0 0 0 0.50 1.00 -8632 ZDHHC20 zinc finger, DHHC-type containing 20 210368 3 2 3 0 0 1 2 0 0 0 0.50 1.00 -8633 TMEM35 transmembrane protein 35 114688 1 1 1 2 0 1 0 0 0 0 0.50 1.00 -8634 PCDH12 protocadherin 12 787304 8 7 8 5 4 4 0 0 0 0 0.50 1.00 -8635 PITPNA phosphatidylinositol transfer protein, alpha 183904 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8636 PEX11B peroxisomal biogenesis factor 11B 174416 2 2 2 0 1 0 1 0 0 0 0.50 1.00 -8637 ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 894012 9 8 9 5 2 5 1 0 1 0 0.50 1.00 -8638 LRRC67 156736 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -8639 PCYOX1 prenylcysteine oxidase 1 345408 3 3 3 0 2 0 1 0 0 0 0.50 1.00 -8640 HMGCL 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria) 212800 1 1 1 1 1 0 0 0 0 0 0.50 1.00 -8641 TRIB1 tribbles homolog 1 (Drosophila) 170380 2 2 2 1 0 2 0 0 0 0 0.50 1.00 -8642 MAG myelin associated glycoprotein 416264 7 5 7 4 3 3 0 0 1 0 0.50 1.00 -8643 TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) 263844 2 2 2 0 0 0 2 0 0 0 0.50 1.00 -8644 PHF10 PHD finger protein 10 287392 2 2 2 0 0 0 2 0 0 0 0.50 1.00 -8645 SPIN2B spindlin family, member 2B 136416 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8646 ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I 328608 2 2 2 2 1 0 1 0 0 0 0.50 1.00 -8647 BCL2L14 BCL2-like 14 (apoptosis facilitator) 243936 2 2 2 0 0 0 2 0 0 0 0.50 1.00 -8648 ZNF639 zinc finger protein 639 327864 2 2 2 0 1 0 1 0 0 0 0.50 1.00 -8649 ARHGDIG Rho GDP dissociation inhibitor (GDI) gamma 106036 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -8650 ANKRA2 ankyrin repeat, family A (RFXANK-like), 2 218176 2 2 2 1 1 0 1 0 0 0 0.50 1.00 -8651 PCNX pecanex homolog (Drosophila) 1599232 12 9 12 2 4 3 2 0 3 0 0.50 1.00 -8652 TNRC6C trinucleotide repeat containing 6C 1028280 7 7 7 3 3 3 0 0 1 0 0.50 1.00 -8653 C1orf93 chromosome 1 open reading frame 93 93520 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8654 ZNF280D zinc finger protein 280D 678720 4 4 4 2 1 1 1 0 1 0 0.50 1.00 -8655 TUBGCP4 tubulin, gamma complex associated protein 4 464352 5 4 5 0 3 2 0 0 0 0 0.50 1.00 -8656 ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 716744 8 5 6 1 2 4 2 0 0 0 0.50 1.00 -8657 HSD17B13 hydroxysteroid (17-beta) dehydrogenase 13 208544 1 1 1 2 0 0 1 0 0 0 0.50 1.00 -8658 TM4SF1 transmembrane 4 L six family member 1 140896 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8659 KIAA1841 KIAA1841 492800 3 3 3 1 1 1 1 0 0 0 0.50 1.00 -8660 HIST1H2AE histone cluster 1, H2ae 88928 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8661 FBXO48 106624 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8662 SMYD1 SET and MYND domain containing 1 338776 3 3 3 3 1 1 1 0 0 0 0.50 1.00 -8663 CAT catalase 366328 3 3 3 3 2 0 1 0 0 0 0.50 1.00 -8664 FZD10 frizzled homolog 10 (Drosophila) 309288 6 5 6 1 3 1 1 1 0 0 0.50 1.00 -8665 SPANXN2 SPANX family, member N2 123424 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8666 LOC729991-MEF2B 176288 1 1 1 0 0 0 0 0 1 0 0.50 1.00 -8667 TRMT2B 350112 2 2 2 1 0 0 2 0 0 0 0.50 1.00 -8668 STK33 serine/threonine kinase 33 345952 2 2 2 0 0 1 0 0 1 0 0.50 1.00 -8669 SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5 258048 2 1 2 0 0 2 0 0 0 0 0.50 1.00 -8670 CHRNG cholinergic receptor, nicotinic, gamma 355236 3 3 3 1 2 0 0 1 0 0 0.50 1.00 -8671 METTL2B methyltransferase like 2B 262752 2 2 2 0 0 1 1 0 0 0 0.50 1.00 -8672 TMED8 transmembrane emp24 protein transport domain containing 8 197120 2 2 2 1 1 0 1 0 0 0 0.50 1.00 -8673 HIST1H1C histone cluster 1, H1c 144116 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8674 GEMIN8 gem (nuclear organelle) associated protein 8 165984 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8675 GABPA GA binding protein transcription factor, alpha subunit 60kDa 313656 4 3 4 1 2 2 0 0 0 0 0.50 1.00 -8676 PCDHGB6 protocadherin gamma subfamily B, 6 622344 11 6 11 0 4 3 3 0 1 0 0.50 1.00 -8677 MIA3 melanoma inhibitory activity family, member 3 1276576 14 8 13 1 4 6 0 0 2 2 0.50 1.00 -8678 KCNE4 potassium voltage-gated channel, Isk-related family, member 4 111020 1 1 1 1 1 0 0 0 0 0 0.50 1.00 -8679 CYB5A cytochrome b5 type A (microsomal) 98112 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8680 BSN bassoon (presynaptic cytomatrix protein) 2386916 17 15 17 3 9 4 2 0 2 0 0.50 1.00 -8681 TTLL11 tubulin tyrosine ligase-like family, member 11 230104 2 2 2 4 0 2 0 0 0 0 0.50 1.00 -8682 RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 1013376 13 9 13 1 8 4 1 0 0 0 0.50 1.00 -8683 CEACAM8 carcinoembryonic antigen-related cell adhesion molecule 8 239680 2 2 2 3 0 2 0 0 0 0 0.50 1.00 -8684 MAN2A2 mannosidase, alpha, class 2A, member 2 790088 5 5 5 4 1 1 2 0 1 0 0.50 1.00 -8685 AMBRA1 autophagy/beclin-1 regulator 1 828576 4 4 4 1 1 1 1 0 1 0 0.50 1.00 -8686 ALOXE3 arachidonate lipoxygenase 3 476736 5 5 5 3 3 0 2 0 0 0 0.50 1.00 -8687 MYO5C myosin VC 1201088 11 9 11 1 4 2 3 0 2 0 0.50 1.00 -8688 RHOF ras homolog gene family, member F (in filopodia) 98664 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8689 PRCP prolylcarboxypeptidase (angiotensinase C) 357056 2 2 2 0 0 0 1 0 1 0 0.50 1.00 -8690 SIT1 signaling threshold regulating transmembrane adaptor 1 119728 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8691 HIAT1 hippocampus abundant transcript 1 333496 2 2 2 0 0 0 1 0 1 0 0.50 1.00 -8692 MAGIX MAGI family member, X-linked 149344 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8693 BRD8 bromodomain containing 8 919072 7 6 7 0 3 2 1 0 1 0 0.50 1.00 -8694 TRAF7 TNF receptor-associated factor 7 396936 2 2 2 2 0 0 1 0 1 0 0.50 1.00 -8695 ABHD3 abhydrolase domain containing 3 275964 3 2 3 1 0 1 1 0 1 0 0.50 1.00 -8696 PDRG1 p53 and DNA damage regulated 1 94528 1 1 1 1 0 0 1 0 0 0 0.50 1.00 -8697 ENC1 ectodermal-neural cortex (with BTB-like domain) 397376 3 3 3 1 3 0 0 0 0 0 0.50 1.00 -8698 NEK6 NIMA (never in mitosis gene a)-related kinase 6 238560 2 2 2 2 0 0 2 0 0 0 0.50 1.00 -8699 SEPT7 septin 7 254732 1 1 1 1 0 0 1 0 0 0 0.50 1.00 -8700 SLC22A17 solute carrier family 22, member 17 280800 2 2 2 1 0 0 1 0 1 0 0.50 1.00 -8701 ORAI3 ORAI calcium release-activated calcium modulator 3 170996 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8702 TSPAN15 tetraspanin 15 170864 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8703 MNAT1 menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) 215488 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8704 AQP12A aquaporin 12A 90904 1 1 1 1 1 0 0 0 0 0 0.50 1.00 -8705 EXOSC2 exosome component 2 205632 2 2 2 1 1 0 0 1 0 0 0.50 1.00 -8706 FTSJ2 FtsJ homolog 2 (E. coli) 167188 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8707 ELOVL7 ELOVL family member 7, elongation of long chain fatty acids (yeast) 195776 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -8708 PSPH phosphoserine phosphatase 156352 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8709 NPY5R neuropeptide Y receptor Y5 300608 2 2 2 2 0 1 1 0 0 0 0.50 1.00 -8710 HNRNPCL1 198464 3 2 3 2 2 1 0 0 0 0 0.50 1.00 -8711 JOSD1 Josephin domain containing 1 140000 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8712 AMMECR1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 170244 1 1 1 0 0 0 0 0 1 0 0.50 1.00 -8713 PDLIM1 PDZ and LIM domain 1 (elfin) 217532 3 2 3 2 0 2 1 0 0 0 0.50 1.00 -8714 MIA2 melanoma inhibitory activity 2 444612 6 3 6 0 2 3 0 0 1 0 0.50 1.00 -8715 ERAS ES cell expressed Ras 140960 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8716 LRIT2 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 372876 3 3 3 0 1 1 1 0 0 0 0.50 1.00 -8717 ST6GALNAC6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 229236 3 3 3 0 2 0 1 0 0 0 0.50 1.00 -8718 KLC1 kinesin light chain 1 391384 2 2 2 1 1 0 0 0 1 0 0.50 1.00 -8719 GIMAP1 GTPase, IMAP family member 1 184800 2 2 2 1 1 1 0 0 0 0 0.50 1.00 -8720 PROS1 protein S (alpha) 468384 6 4 6 1 1 3 1 0 1 0 0.50 1.00 -8721 MSH2 mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) 619416 7 5 7 1 1 2 3 0 1 0 0.50 1.00 -8722 SPTLC1 serine palmitoyltransferase, long chain base subunit 1 332304 4 3 4 0 1 2 1 0 0 0 0.50 1.00 -8723 XPA xeroderma pigmentosum, complementation group A 168280 1 1 1 0 0 0 0 0 1 0 0.50 1.00 -8724 KIAA1919 KIAA1919 352216 3 2 3 0 0 1 1 0 1 0 0.50 1.00 -8725 GPR55 G protein-coupled receptor 55 215852 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -8726 POLR1E polymerase (RNA) I polypeptide E, 53kDa 288504 2 2 2 1 1 1 0 0 0 0 0.50 1.00 -8727 COL9A2 collagen, type IX, alpha 2 372544 2 2 2 0 0 0 0 1 1 0 0.50 1.00 -8728 RHEBL1 Ras homolog enriched in brain like 1 130816 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8729 OMG oligodendrocyte myelin glycoprotein 297248 3 2 3 1 0 1 2 0 0 0 0.50 1.00 -8730 CEPT1 choline/ethanolamine phosphotransferase 1 287392 1 1 1 1 0 0 0 0 1 0 0.50 1.00 -8731 CTNND1 catenin (cadherin-associated protein), delta 1 665064 6 4 6 1 1 1 1 0 3 0 0.50 1.00 -8732 H2AFV H2A histone family, member V 95956 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8733 RPP38 ribonuclease P/MRP 38kDa subunit 189728 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8734 KRTAP9-2 keratin associated protein 9-2 118496 1 1 1 1 1 0 0 0 0 0 0.50 1.00 -8735 RAB38 RAB38, member RAS oncogene family 145152 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -8736 TCEAL2 transcription elongation factor A (SII)-like 2 153976 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8737 ZNF517 zinc finger protein 517 229608 2 2 2 0 0 1 0 0 1 0 0.50 1.00 -8738 ASPDH 110008 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8739 LRRIQ4 381388 4 4 4 2 0 0 4 0 0 0 0.50 1.00 -8740 KCNU1 potassium channel, subfamily U, member 1 781624 12 7 12 3 2 7 3 0 0 0 0.50 1.00 -8741 RC3H1 ring finger and CCCH-type zinc finger domains 1 779072 7 6 7 0 2 4 1 0 0 0 0.50 1.00 -8742 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2) 80864 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -8743 SRCRB4D scavenger receptor cysteine rich domain containing, group B (4 domains) 295616 2 2 2 0 0 0 1 0 1 0 0.50 1.00 -8744 DZIP3 DAZ interacting protein 3, zinc finger 840224 6 6 6 2 1 3 2 0 0 0 0.50 1.00 -8745 MRPL18 mitochondrial ribosomal protein L18 124808 2 1 2 0 1 0 1 0 0 0 0.50 1.00 -8746 MLH3 mutL homolog 3 (E. coli) 987840 8 6 8 1 1 3 2 0 2 0 0.50 1.00 -8747 TM9SF4 transmembrane 9 superfamily protein member 4 438144 3 3 3 1 2 1 0 0 0 0 0.50 1.00 -8748 LBR lamin B receptor 425600 5 4 5 0 2 1 1 0 1 0 0.50 1.00 -8749 CDHR5 480564 4 4 4 2 3 0 0 0 1 0 0.50 1.00 -8750 TPRN 206976 1 1 1 0 0 0 0 0 1 0 0.50 1.00 -8751 KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 346976 3 3 2 1 0 3 0 0 0 0 0.50 1.00 -8752 SCNM1 sodium channel modifier 1 161504 1 1 1 1 0 0 1 0 0 0 0.50 1.00 -8753 DSCR3 Down syndrome critical region gene 3 207424 2 2 2 1 0 0 1 0 1 0 0.50 1.00 -8754 SEC14L1 SEC14-like 1 (S. cerevisiae) 498820 4 4 4 1 2 0 1 0 1 0 0.50 1.00 -8755 MCAM melanoma cell adhesion molecule 403564 3 3 3 1 3 0 0 0 0 0 0.50 1.00 -8756 IL13 interleukin 13 102368 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -8757 C20orf7 chromosome 20 open reading frame 7 246428 2 2 2 0 1 0 1 0 0 0 0.51 1.00 -8758 UNC5A unc-5 homolog A (C. elegans) 471884 2 2 2 0 0 0 1 0 1 0 0.51 1.00 -8759 FAM70B family with sequence similarity 70, member B 216272 2 2 2 2 0 1 0 0 1 0 0.51 1.00 -8760 PARP4 poly (ADP-ribose) polymerase family, member 4 1163288 10 7 10 5 4 3 2 0 1 0 0.51 1.00 -8761 PELI3 pellino homolog 3 (Drosophila) 269892 4 3 4 0 2 1 0 0 1 0 0.51 1.00 -8762 F2 coagulation factor II (thrombin) 411636 4 4 4 1 1 1 2 0 0 0 0.51 1.00 -8763 BTBD8 BTB (POZ) domain containing 8 262752 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8764 ADORA2B adenosine A2b receptor 215068 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8765 HSPA6 heat shock 70kDa protein 6 (HSP70B') 396968 3 3 3 2 1 1 1 0 0 0 0.51 1.00 -8766 MAN2C1 mannosidase, alpha, class 2C, member 1 678844 6 6 6 0 2 1 2 0 1 0 0.51 1.00 -8767 TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 340004 3 3 3 3 0 2 1 0 0 0 0.51 1.00 -8768 CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1 347760 3 3 3 1 0 1 1 0 1 0 0.51 1.00 -8769 C6orf127 chromosome 6 open reading frame 127 78416 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8770 PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta 103936 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8771 DPP7 dipeptidyl-peptidase 7 243968 2 2 2 0 1 0 0 0 1 0 0.51 1.00 -8772 GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like 404128 4 4 4 1 1 3 0 0 0 0 0.51 1.00 -8773 TUBB2B tubulin, beta 2B 213864 3 3 3 1 2 1 0 0 0 0 0.51 1.00 -8774 ALKBH2 alkB, alkylation repair homolog 2 (E. coli) 178752 1 1 1 0 0 0 0 0 1 0 0.51 1.00 -8775 GRAMD1B GRAM domain containing 1B 426600 5 4 5 0 3 1 1 0 0 0 0.51 1.00 -8776 ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 491680 5 5 5 0 3 1 1 0 0 0 0.51 1.00 -8777 GRM4 glutamate receptor, metabotropic 4 608972 7 6 7 2 3 2 1 0 1 0 0.51 1.00 -8778 EVI2B ecotropic viral integration site 2B 302624 2 1 2 0 0 0 1 0 1 0 0.51 1.00 -8779 CLRN3 clarin 3 155232 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -8780 OSGIN2 oxidative stress induced growth inhibitor family member 2 346752 2 2 2 2 0 0 2 0 0 0 0.51 1.00 -8781 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 319424 4 2 4 1 2 1 1 0 0 0 0.51 1.00 -8782 RG9MTD1 RNA (guanine-9-) methyltransferase domain containing 1 272384 2 2 2 0 0 2 0 0 0 0 0.51 1.00 -8783 C7orf64 251776 3 3 3 1 2 0 1 0 0 0 0.51 1.00 -8784 INA internexin neuronal intermediate filament protein, alpha 180596 2 2 2 0 0 2 0 0 0 0 0.51 1.00 -8785 ATXN2L ataxin 2-like 748916 7 6 7 1 3 2 0 0 2 0 0.51 1.00 -8786 PRPF31 PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) 295000 2 2 2 0 1 0 0 0 1 0 0.51 1.00 -8787 TTC9B tetratricopeptide repeat domain 9B 95760 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -8788 WBP4 WW domain binding protein 4 (formin binding protein 21) 262304 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8789 CCHCR1 coiled-coil alpha-helical rod protein 1 430668 5 5 5 0 2 1 2 0 0 0 0.51 1.00 -8790 BAX BCL2-associated X protein 169232 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8791 TMEM63B transmembrane protein 63B 575344 5 5 5 4 1 3 0 0 1 0 0.51 1.00 -8792 OR52B2 olfactory receptor, family 52, subfamily B, member 2 218624 2 2 2 0 1 1 0 0 0 0 0.51 1.00 -8793 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative) 145992 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8794 PUM2 pumilio homolog 2 (Drosophila) 733600 6 4 6 1 1 4 0 0 1 0 0.51 1.00 -8795 NUPR1 69664 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8796 ZNF213 zinc finger protein 213 288764 3 3 3 0 3 0 0 0 0 0 0.51 1.00 -8797 TEAD3 TEA domain family member 3 300480 2 2 2 0 0 0 1 0 1 0 0.51 1.00 -8798 IGF2R insulin-like growth factor 2 receptor 1683360 19 15 19 7 12 3 4 0 0 0 0.51 1.00 -8799 ACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase) 257152 2 2 2 2 0 1 1 0 0 0 0.51 1.00 -8800 ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 260736 1 1 1 1 0 0 1 0 0 0 0.51 1.00 -8801 TAS2R19 taste receptor, type 2, member 19 202496 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -8802 GRHL2 grainyhead-like 2 (Drosophila) 435008 2 2 2 4 0 0 0 0 2 0 0.51 1.00 -8803 STRN4 striatin, calmodulin binding protein 4 440580 4 4 4 0 2 1 0 0 1 0 0.51 1.00 -8804 MLL myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) 2619092 21 13 21 8 8 8 2 0 3 0 0.51 1.00 -8805 MAGEA11 melanoma antigen family A, 11 295456 3 2 3 1 0 2 1 0 0 0 0.51 1.00 -8806 FAM70A family with sequence similarity 70, member A 235728 3 2 3 3 0 1 2 0 0 0 0.51 1.00 -8807 SERPINC1 serpin peptidase inhibitor, clade C (antithrombin), member 1 318752 3 2 3 2 1 2 0 0 0 0 0.51 1.00 -8808 TIFA TRAF-interacting protein with forkhead-associated domain 125216 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8809 CASP3 caspase 3, apoptosis-related cysteine peptidase 192192 2 2 2 1 0 1 1 0 0 0 0.51 1.00 -8810 ZNF207 zinc finger protein 207 343392 1 1 1 0 0 0 0 0 1 0 0.51 1.00 -8811 ZBTB6 zinc finger and BTB domain containing 6 286496 2 2 2 0 0 2 0 0 0 0 0.51 1.00 -8812 OR13C4 olfactory receptor, family 13, subfamily C, member 4 215264 2 2 2 0 0 2 0 0 0 0 0.51 1.00 -8813 NME5 non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase) 147616 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -8814 KLF11 Kruppel-like factor 11 338016 2 2 2 0 1 0 1 0 0 0 0.51 1.00 -8815 OR6V1 olfactory receptor, family 6, subfamily V, member 1 211904 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8816 CCNB2 cyclin B2 276192 2 2 2 0 0 2 0 0 0 0 0.51 1.00 -8817 RAD51L3 RAD51-like 3 (S. cerevisiae) 271040 3 3 3 0 1 2 0 0 0 0 0.51 1.00 -8818 RBP2 retinol binding protein 2, cellular 94304 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8819 GBAS glioblastoma amplified sequence 180320 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8820 RPS2 ribosomal protein S2 165844 1 1 1 1 0 0 0 0 1 0 0.51 1.00 -8821 CCDC129 coiled-coil domain containing 129 701920 8 5 8 0 1 5 1 0 1 0 0.51 1.00 -8822 MOGAT2 monoacylglycerol O-acyltransferase 2 230496 1 1 1 1 0 0 0 0 1 0 0.51 1.00 -8823 C10orf47 chromosome 10 open reading frame 47 136264 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8824 TRPV1 transient receptor potential cation channel, subfamily V, member 1 538024 4 4 4 3 3 0 0 0 1 0 0.51 1.00 -8825 GLE1 GLE1 RNA export mediator homolog (yeast) 487648 3 3 3 0 0 2 1 0 0 0 0.51 1.00 -8826 ARHGEF2 rho/rac guanine nucleotide exchange factor (GEF) 2 625244 5 5 5 1 2 2 0 0 1 0 0.51 1.00 -8827 KSR2 kinase suppressor of ras 2 628264 5 4 4 6 1 0 2 0 2 0 0.51 1.00 -8828 GTF3C3 general transcription factor IIIC, polypeptide 3, 102kDa 612192 6 5 6 3 2 2 2 0 0 0 0.51 1.00 -8829 IL1A interleukin 1, alpha 188160 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8830 GANAB glucosidase, alpha; neutral AB 672224 4 4 4 1 2 1 1 0 0 0 0.51 1.00 -8831 COL18A1 collagen, type XVIII, alpha 1 743116 4 4 4 1 0 1 0 0 3 0 0.51 1.00 -8832 SLC30A1 solute carrier family 30 (zinc transporter), member 1 320068 3 2 3 0 0 1 1 0 1 0 0.51 1.00 -8833 TACC1 transforming, acidic coiled-coil containing protein 1 522128 3 3 3 0 3 0 0 0 0 0 0.51 1.00 -8834 ARMC2 armadillo repeat containing 2 598276 6 4 5 2 2 3 0 1 0 0 0.51 1.00 -8835 ZNF622 zinc finger protein 622 324996 3 3 3 0 0 2 1 0 0 0 0.51 1.00 -8836 IRF2 interferon regulatory factor 2 242368 3 2 3 1 1 1 1 0 0 0 0.51 1.00 -8837 LMOD2 leiomodin 2 (cardiac) 326472 3 3 3 2 2 1 0 0 0 0 0.51 1.00 -8838 LYPD2 LY6/PLAUR domain containing 2 72536 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8839 ALDH7A1 aldehyde dehydrogenase 7 family, member A1 374656 3 3 3 1 1 2 0 0 0 0 0.51 1.00 -8840 ATF4 activating transcription factor 4 (tax-responsive enhancer element B67) 223132 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -8841 TMEM100 transmembrane protein 100 91616 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8842 SYCP3 synaptonemal complex protein 3 166432 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -8843 BTD biotinidase 365120 2 2 2 0 1 0 1 0 0 0 0.51 1.00 -8844 ZNF227 zinc finger protein 227 541184 4 4 4 0 0 4 0 0 0 0 0.51 1.00 -8845 URB2 1031100 10 7 10 2 2 6 2 0 0 0 0.51 1.00 -8846 INSC inscuteable homolog (Drosophila) 393656 3 3 3 0 2 0 1 0 0 0 0.51 1.00 -8847 MRS2 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) 303520 2 2 2 0 0 1 0 0 1 0 0.51 1.00 -8848 HECTD3 HECT domain containing 3 530852 5 5 5 2 4 0 1 0 0 0 0.51 1.00 -8849 ECD ecdysoneless homolog (Drosophila) 445088 3 3 3 1 1 1 0 0 1 0 0.51 1.00 -8850 GPR173 G protein-coupled receptor 173 224904 2 2 2 1 1 0 1 0 0 0 0.51 1.00 -8851 POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 153440 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8852 MALL mal, T-cell differentiation protein-like 87320 1 1 1 2 1 0 0 0 0 0 0.51 1.00 -8853 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 259252 3 3 3 1 2 1 0 0 0 0 0.51 1.00 -8854 PODXL podocalyxin-like 334888 3 3 3 1 1 0 2 0 0 0 0.51 1.00 -8855 PTPRE protein tyrosine phosphatase, receptor type, E 495572 5 5 5 1 2 2 1 0 0 0 0.51 1.00 -8856 ZNF417 zinc finger protein 417 389508 2 2 2 1 0 0 1 0 1 0 0.51 1.00 -8857 PADI3 peptidyl arginine deiminase, type III 460712 3 3 3 1 1 1 0 1 0 0 0.51 1.00 -8858 TIMM22 translocase of inner mitochondrial membrane 22 homolog (yeast) 128828 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8859 PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit 395360 3 3 3 2 0 3 0 0 0 0 0.51 1.00 -8860 HSD17B2 hydroxysteroid (17-beta) dehydrogenase 2 265216 2 2 2 1 1 0 0 0 1 0 0.51 1.00 -8861 CEP57 centrosomal protein 57kDa 346528 2 2 2 1 0 0 0 0 2 0 0.51 1.00 -8862 EFHD2 EF-hand domain family, member D2 131860 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8863 CCDC55 coiled-coil domain containing 55 378656 2 2 2 1 0 1 1 0 0 0 0.51 1.00 -8864 BAG4 BCL2-associated athanogene 4 267980 2 2 2 0 0 2 0 0 0 0 0.51 1.00 -8865 IL1F6 interleukin 1 family, member 6 (epsilon) 110432 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8866 ATF3 activating transcription factor 3 139328 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8867 KRT1 keratin 1 (epidermolytic hyperkeratosis) 413300 4 4 4 2 1 3 0 0 0 0 0.51 1.00 -8868 IGFBP5 insulin-like growth factor binding protein 5 124936 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -8869 CHST12 carbohydrate (chondroitin 4) sulfotransferase 12 232064 3 3 3 3 1 1 1 0 0 0 0.51 1.00 -8870 GTF2F2 general transcription factor IIF, polypeptide 2, 30kDa 165648 1 1 1 1 0 0 0 0 1 0 0.51 1.00 -8871 C9orf156 chromosome 9 open reading frame 156 296064 3 2 3 2 1 2 0 0 0 0 0.51 1.00 -8872 IGFBP2 insulin-like growth factor binding protein 2, 36kDa 134120 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -8873 PRPS1 phosphoribosyl pyrophosphate synthetase 1 220640 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -8874 PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2 275968 2 2 2 2 1 0 1 0 0 0 0.51 1.00 -8875 PAQR3 progestin and adipoQ receptor family member III 215040 2 2 2 1 0 1 1 0 0 0 0.51 1.00 -8876 CCDC8 coiled-coil domain containing 8 356552 3 3 3 1 1 1 1 0 0 0 0.51 1.00 -8877 ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide 711872 8 7 8 9 4 4 0 0 0 0 0.51 1.00 -8878 PARK7 Parkinson disease (autosomal recessive, early onset) 7 129928 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -8879 RNF138 ring finger protein 138 170360 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -8880 MRPL4 mitochondrial ribosomal protein L4 229264 2 2 2 1 1 0 1 0 0 0 0.51 1.00 -8881 ASB8 ankyrin repeat and SOCS box-containing 8 196896 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -8882 MSX2 msh homeobox 2 106596 1 1 1 2 1 0 0 0 0 0 0.51 1.00 -8883 VPS33A vacuolar protein sorting 33 homolog A (S. cerevisiae) 412832 3 3 3 1 1 0 2 0 0 0 0.51 1.00 -8884 RRAGD Ras-related GTP binding D 241696 1 1 1 3 0 1 0 0 0 0 0.51 1.00 -8885 CSRNP1 371932 4 4 4 1 2 2 0 0 0 0 0.51 1.00 -8886 WNT7A wingless-type MMTV integration site family, member 7A 238784 2 2 2 0 2 0 0 0 0 0 0.51 1.00 -8887 MYH3 myosin, heavy chain 3, skeletal muscle, embryonic 1339296 14 7 14 3 5 4 0 0 5 0 0.51 1.00 -8888 C3orf75 185696 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8889 CCL22 chemokine (C-C motif) ligand 22 65856 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -8890 DPT dermatopontin 139328 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8891 ATG4A ATG4 autophagy related 4 homolog A (S. cerevisiae) 279776 2 2 2 1 0 1 1 0 0 0 0.52 1.00 -8892 SLC22A14 solute carrier family 22, member 14 407848 4 4 4 1 2 1 1 0 0 0 0.52 1.00 -8893 KIAA2018 KIAA2018 1513792 13 8 13 1 2 7 3 0 1 0 0.52 1.00 -8894 TSPAN10 tetraspanin 10 157944 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -8895 ZNF366 zinc finger protein 366 491540 4 4 4 3 1 2 0 0 1 0 0.52 1.00 -8896 EPM2AIP1 EPM2A (laforin) interacting protein 1 394940 4 3 4 3 1 1 1 0 1 0 0.52 1.00 -8897 POT1 POT1 protection of telomeres 1 homolog (S. pombe) 440160 3 3 3 0 0 3 0 0 0 0 0.52 1.00 -8898 CWF19L1 CWF19-like 1, cell cycle control (S. pombe) 374752 3 2 3 1 0 2 0 0 1 0 0.52 1.00 -8899 SLC39A11 solute carrier family 39 (metal ion transporter), member 11 236096 2 2 2 2 1 1 0 0 0 0 0.52 1.00 -8900 C22orf33 chromosome 22 open reading frame 33 137536 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -8901 EMR2 egf-like module containing, mucin-like, hormone receptor-like 2 564088 7 5 6 2 3 2 2 0 0 0 0.52 1.00 -8902 SLC36A2 solute carrier family 36 (proton/amino acid symporter), member 2 334208 2 2 2 1 1 1 0 0 0 0 0.52 1.00 -8903 RGS10 regulator of G-protein signaling 10 117376 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8904 GRHPR glyoxylate reductase/hydroxypyruvate reductase 216616 1 1 1 0 0 0 0 1 0 0 0.52 1.00 -8905 NBPF16 neuroblastoma breakpoint family, member 16 250524 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8906 BLVRA biliverdin reductase A 205856 2 2 1 1 2 0 0 0 0 0 0.52 1.00 -8907 PTGFRN prostaglandin F2 receptor negative regulator 566328 5 5 5 5 3 0 2 0 0 0 0.52 1.00 -8908 DLX5 distal-less homeobox 5 197568 3 3 3 4 2 0 1 0 0 0 0.52 1.00 -8909 SNAPC2 small nuclear RNA activating complex, polypeptide 2, 45kDa 198492 2 2 2 0 0 1 1 0 0 0 0.52 1.00 -8910 TNFRSF19 tumor necrosis factor receptor superfamily, member 19 295008 3 3 3 1 2 0 1 0 0 0 0.52 1.00 -8911 SKA3 278460 2 2 2 0 0 1 1 0 0 0 0.52 1.00 -8912 RIC8A resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) 363104 3 3 3 0 1 0 1 0 1 0 0.52 1.00 -8913 WHSC2 Wolf-Hirschhorn syndrome candidate 2 337988 5 4 5 0 3 0 1 0 1 0 0.52 1.00 -8914 ART3 ADP-ribosyltransferase 3 263648 2 2 2 0 1 1 0 0 0 0 0.52 1.00 -8915 WWC1 WW and C2 domain containing 1 738808 6 5 6 0 3 1 0 1 1 0 0.52 1.00 -8916 WEE1 WEE1 homolog (S. pombe) 305472 3 2 3 1 1 2 0 0 0 0 0.52 1.00 -8917 TMEM50A transmembrane protein 50A 111552 2 1 2 1 1 1 0 0 0 0 0.52 1.00 -8918 CYP4A22 cytochrome P450, family 4, subfamily A, polypeptide 22 360192 2 2 2 1 1 1 0 0 0 0 0.52 1.00 -8919 PIK3C2B phosphoinositide-3-kinase, class 2, beta polypeptide 1111888 8 7 8 3 5 2 1 0 0 0 0.52 1.00 -8920 CASP1 caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase) 280224 2 2 2 0 0 2 0 0 0 0 0.52 1.00 -8921 PSMD11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 292028 3 3 3 0 1 2 0 0 0 0 0.52 1.00 -8922 EPHA6 EPH receptor A6 754068 5 4 5 2 2 0 1 0 2 0 0.52 1.00 -8923 ARX aristaless related homeobox 111184 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -8924 SLC35E3 solute carrier family 35, member E3 215488 2 2 2 0 0 0 2 0 0 0 0.52 1.00 -8925 OTOF otoferlin 1320812 9 9 9 6 1 1 3 2 2 0 0.52 1.00 -8926 FCRL1 Fc receptor-like 1 298816 2 2 2 0 1 1 0 0 0 0 0.52 1.00 -8927 GUF1 GUF1 GTPase homolog (S. cerevisiae) 450576 3 3 3 0 1 2 0 0 0 0 0.52 1.00 -8928 TEKT1 tektin 1 287840 3 3 3 2 1 0 2 0 0 0 0.52 1.00 -8929 DACT1 dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) 491820 6 5 6 3 1 2 2 0 1 0 0.52 1.00 -8930 ARMC10 armadillo repeat containing 10 207368 1 1 1 1 1 0 0 0 0 0 0.52 1.00 -8931 PRELID2 PRELI domain containing 2 123208 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8932 ZFR zinc finger RNA binding protein 720600 7 5 7 3 1 4 2 0 0 0 0.52 1.00 -8933 PCNP PEST proteolytic signal containing nuclear protein 115520 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -8934 FADS3 fatty acid desaturase 3 248724 2 2 2 1 2 0 0 0 0 0 0.52 1.00 -8935 KHDC1 KH homology domain containing 1 113568 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8936 POU2F3 POU class 2 homeobox 3 303952 3 3 3 1 2 0 1 0 0 0 0.52 1.00 -8937 HADHA hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit 531192 3 3 3 3 0 1 0 0 2 0 0.52 1.00 -8938 SOX2 SRY (sex determining region Y)-box 2 174468 2 2 2 4 0 0 2 0 0 0 0.52 1.00 -8939 ENOSF1 enolase superfamily member 1 292992 1 1 1 2 0 0 0 0 1 0 0.52 1.00 -8940 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 203432 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -8941 SLC43A1 solute carrier family 43, member 1 386416 3 3 2 2 2 1 0 0 0 0 0.52 1.00 -8942 DBNDD1 dysbindin (dystrobrevin binding protein 1) domain containing 1 122784 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8943 SNX31 sorting nexin 31 301416 4 3 4 0 2 1 1 0 0 0 0.52 1.00 -8944 ADAD2 adenosine deaminase domain containing 2 315912 1 1 1 1 0 0 0 0 1 0 0.52 1.00 -8945 CKMT2 creatine kinase, mitochondrial 2 (sarcomeric) 290304 5 3 5 2 4 1 0 0 0 0 0.52 1.00 -8946 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 812000 8 5 8 1 2 3 2 0 1 0 0.52 1.00 -8947 CHRNA5 cholinergic receptor, nicotinic, alpha 5 295904 2 2 2 2 1 1 0 0 0 0 0.52 1.00 -8948 ATP1A2 ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide 706720 9 7 9 4 6 3 0 0 0 0 0.52 1.00 -8949 NUCB2 nucleobindin 2 293664 2 2 2 0 0 1 0 0 1 0 0.52 1.00 -8950 CCDC88C coiled-coil domain containing 88C 1246168 9 8 8 3 4 3 0 0 2 0 0.52 1.00 -8951 ETV3 ets variant gene 3 99456 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8952 NRAP nebulin-related anchoring protein 1200864 16 8 13 2 6 4 4 0 2 0 0.52 1.00 -8953 LPIN3 lipin 3 588896 5 5 5 0 1 1 1 1 1 0 0.52 1.00 -8954 AHCY S-adenosylhomocysteine hydrolase 295584 3 3 3 1 0 1 2 0 0 0 0.52 1.00 -8955 STAG3 stromal antigen 3 853440 9 6 9 1 4 4 0 0 1 0 0.52 1.00 -8956 MTL5 metallothionein-like 5, testis-specific (tesmin) 291088 2 2 2 0 0 1 1 0 0 0 0.52 1.00 -8957 LRRC28 leucine rich repeat containing 28 255360 2 2 2 1 2 0 0 0 0 0 0.52 1.00 -8958 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 512960 3 3 3 0 2 1 0 0 0 0 0.52 1.00 -8959 FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) 417312 2 2 2 0 0 1 0 0 1 0 0.52 1.00 -8960 MRPL24 mitochondrial ribosomal protein L24 150304 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8961 GLRA1 glycine receptor, alpha 1 312704 2 2 2 0 1 0 0 0 1 0 0.52 1.00 -8962 NRCAM neuronal cell adhesion molecule 907160 7 6 7 1 2 4 1 0 0 0 0.52 1.00 -8963 GDNF glial cell derived neurotrophic factor 135604 1 1 1 1 1 0 0 0 0 0 0.52 1.00 -8964 GPSM2 G-protein signaling modulator 2 (AGS3-like, C. elegans) 470400 2 2 2 1 0 0 0 0 2 0 0.52 1.00 -8965 BAK1 BCL2-antagonist/killer 1 136880 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -8966 CNOT1 CCR4-NOT transcription complex, subunit 1 1642508 23 11 23 3 13 7 3 0 0 0 0.52 1.00 -8967 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 590016 4 3 4 4 0 2 1 0 1 0 0.52 1.00 -8968 MARCH1 membrane-associated ring finger (C3HC4) 1 187040 2 2 2 1 1 1 0 0 0 0 0.52 1.00 -8969 FAM58B family with sequence similarity 58, member B 170912 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8970 KREMEN2 kringle containing transmembrane protein 2 114856 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -8971 TAS2R3 taste receptor, type 2, member 3 213920 1 1 1 3 0 0 1 0 0 0 0.52 1.00 -8972 HOMER3 homer homolog 3 (Drosophila) 186492 1 1 1 0 0 0 0 1 0 0 0.52 1.00 -8973 KIAA0922 KIAA0922 1008476 12 9 12 4 5 4 3 0 0 0 0.52 1.00 -8974 METT5D1 methyltransferase 5 domain containing 1 188608 1 1 1 1 0 0 1 0 0 0 0.52 1.00 -8975 LST-3TM12 442400 3 2 3 1 1 0 2 0 0 0 0.52 1.00 -8976 RNASE10 ribonuclease, RNase A family, 10 (non-active) 146720 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -8977 KLF4 Kruppel-like factor 4 (gut) 233912 2 2 2 0 1 0 0 0 1 0 0.52 1.00 -8978 USH1G Usher syndrome 1G (autosomal recessive) 231964 3 3 3 0 3 0 0 0 0 0 0.52 1.00 -8979 ANAPC10 anaphase promoting complex subunit 10 128576 2 1 2 1 0 2 0 0 0 0 0.52 1.00 -8980 C19orf44 chromosome 19 open reading frame 44 439376 5 4 5 1 2 1 0 0 0 2 0.52 1.00 -8981 TGIF2LX TGFB-induced factor homeobox 2-like, X-linked 163520 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -8982 OR1L4 olfactory receptor, family 1, subfamily L, member 4 210560 1 1 1 1 0 0 1 0 0 0 0.52 1.00 -8983 GAS2 growth arrest-specific 2 217280 2 2 2 3 0 2 0 0 0 0 0.52 1.00 -8984 FATE1 fetal and adult testis expressed 1 113168 1 1 1 1 0 0 1 0 0 0 0.52 1.00 -8985 FMO2 flavin containing monooxygenase 2 (non-functional) 324352 4 3 4 1 0 2 2 0 0 0 0.52 1.00 -8986 C10orf118 chromosome 10 open reading frame 118 617568 4 4 4 1 0 0 4 0 0 0 0.52 1.00 -8987 TRO trophinin 985480 7 7 7 1 2 4 1 0 0 0 0.52 1.00 -8988 FRY furry homolog (Drosophila) 2080064 25 13 25 5 7 8 8 0 2 0 0.52 1.00 -8989 SLC39A9 solute carrier family 39 (zinc transporter), member 9 213248 1 1 1 3 0 1 0 0 0 0 0.52 1.00 -8990 C3orf58 chromosome 3 open reading frame 58 203756 4 2 4 0 0 2 0 0 0 2 0.52 1.00 -8991 FGFR1OP2 FGFR1 oncogene partner 2 178080 2 2 2 2 1 1 0 0 0 0 0.52 1.00 -8992 POLN polymerase (DNA directed) nu 618072 4 4 4 1 1 2 1 0 0 0 0.52 1.00 -8993 ZC3H6 zinc finger CCCH-type containing 6 747328 8 6 8 1 2 5 1 0 0 0 0.52 1.00 -8994 CLDN2 claudin 2 156128 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8995 MTHFD1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 653184 6 5 6 2 3 3 0 0 0 0 0.52 1.00 -8996 CAPN7 calpain 7 551144 4 4 4 2 0 2 2 0 0 0 0.52 1.00 -8997 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 112672 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -8998 C18orf55 chromosome 18 open reading frame 55 170688 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -8999 DHX58 DEXH (Asp-Glu-X-His) box polypeptide 58 463680 3 3 3 0 0 1 1 0 1 0 0.52 1.00 -9000 BOD1L 2005416 17 10 17 8 6 4 5 0 0 2 0.52 1.00 -9001 RPS13 ribosomal protein S13 107520 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -9002 HEYL hairy/enhancer-of-split related with YRPW motif-like 165140 2 2 2 0 1 1 0 0 0 0 0.52 1.00 -9003 ORC4L origin recognition complex, subunit 4-like (yeast) 305312 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -9004 FLT3LG fms-related tyrosine kinase 3 ligand 160812 1 1 1 1 1 0 0 0 0 0 0.52 1.00 -9005 RAD50 RAD50 homolog (S. cerevisiae) 904736 11 7 11 1 3 7 1 0 0 0 0.52 1.00 -9006 DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) 258520 4 2 4 0 0 2 2 0 0 0 0.52 1.00 -9007 VDR vitamin D (1,25- dihydroxyvitamin D3) receptor 294648 2 2 2 2 2 0 0 0 0 0 0.52 1.00 -9008 CLK3 CDC-like kinase 3 339940 3 3 3 0 0 2 1 0 0 0 0.52 1.00 -9009 RNASEH2A ribonuclease H2, subunit A 193128 2 2 2 1 2 0 0 0 0 0 0.52 1.00 -9010 C1orf156 chromosome 1 open reading frame 156 251552 2 2 2 1 0 2 0 0 0 0 0.52 1.00 -9011 MEN1 multiple endocrine neoplasia I 400152 2 2 2 0 0 0 0 0 2 0 0.52 1.00 -9012 GRPEL1 GrpE-like 1, mitochondrial (E. coli) 149912 1 1 1 1 1 0 0 0 0 0 0.52 1.00 -9013 ITPRIP 357056 3 3 3 1 2 0 1 0 0 0 0.52 1.00 -9014 SRCAP Snf2-related CREBBP activator protein 2172520 15 14 15 7 5 7 3 0 0 0 0.52 1.00 -9015 C11orf73 chromosome 11 open reading frame 73 132912 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -9016 THAP8 THAP domain containing 8 144336 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -9017 NDUFAF3 105448 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -9018 KBTBD4 kelch repeat and BTB (POZ) domain containing 4 353696 2 2 2 0 1 0 1 0 0 0 0.52 1.00 -9019 KLHL2 kelch-like 2, Mayven (Drosophila) 405888 3 3 3 2 1 2 0 0 0 0 0.52 1.00 -9020 HELZ helicase with zinc finger 1332576 9 6 9 2 3 3 1 0 2 0 0.52 1.00 -9021 CCDC22 coiled-coil domain containing 22 354376 5 3 5 0 0 4 1 0 0 0 0.52 1.00 -9022 DCTN3 dynactin 3 (p22) 144008 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -9023 LRP4 low density lipoprotein receptor-related protein 4 1298120 14 11 14 1 7 4 2 0 1 0 0.52 1.00 -9024 PRTG protogenin homolog (Gallus gallus) 771764 5 5 5 1 3 2 0 0 0 0 0.53 1.00 -9025 TAOK1 TAO kinase 1 686504 5 4 5 1 2 2 0 0 1 0 0.53 1.00 -9026 OLFML2A olfactomedin-like 2A 415480 4 4 4 4 3 0 0 0 1 0 0.53 1.00 -9027 HADHB hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit 332640 2 2 2 1 0 2 0 0 0 0 0.53 1.00 -9028 LAMC3 laminin, gamma 3 968492 8 8 8 4 5 1 2 0 0 0 0.53 1.00 -9029 DLK2 delta-like 2 homolog (Drosophila) 231832 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -9030 MOBKL2C MOB1, Mps One Binder kinase activator-like 2C (yeast) 178724 2 2 2 0 2 0 0 0 0 0 0.53 1.00 -9031 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 291032 3 3 2 0 3 0 0 0 0 0 0.53 1.00 -9032 DMWD dystrophia myotonica, WD repeat containing 317100 3 2 3 2 1 1 0 0 1 0 0.53 1.00 -9033 SRP72 signal recognition particle 72kDa 468608 4 4 4 0 2 2 0 0 0 0 0.53 1.00 -9034 C9orf7 chromosome 9 open reading frame 7 94400 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -9035 C15orf59 189700 2 2 2 0 1 0 1 0 0 0 0.53 1.00 -9036 CDC16 cell division cycle 16 homolog (S. cerevisiae) 421792 4 3 4 1 3 1 0 0 0 0 0.53 1.00 -9037 MOBKL1B MOB1, Mps One Binder kinase activator-like 1B (yeast) 135064 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -9038 SOX14 SRY (sex determining region Y)-box 14 155416 2 2 2 0 2 0 0 0 0 0 0.53 1.00 -9039 C14orf166B chromosome 14 open reading frame 166B 325336 3 3 3 0 0 1 2 0 0 0 0.53 1.00 -9040 SCO1 SCO cytochrome oxidase deficient homolog 1 (yeast) 192472 1 1 1 1 0 1 0 0 0 0 0.53 1.00 -9041 CABP4 calcium binding protein 4 155872 2 2 2 1 2 0 0 0 0 0 0.53 1.00 -9042 SMAP1 stromal membrane-associated GTPase-activating protein 1 324352 2 2 2 0 1 0 0 0 1 0 0.53 1.00 -9043 ZCCHC12 zinc finger, CCHC domain containing 12 271712 2 2 2 1 2 0 0 0 0 0 0.53 1.00 -9044 KIN KIN, antigenic determinant of recA protein homolog (mouse) 276416 2 2 2 1 1 0 1 0 0 0 0.53 1.00 -9045 VEGFA vascular endothelial growth factor A 185528 2 2 2 0 2 0 0 0 0 0 0.53 1.00 -9046 NFATC4 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 615204 5 5 5 2 3 1 0 0 1 0 0.53 1.00 -9047 PLAA phospholipase A2-activating protein 524796 3 3 3 0 0 2 1 0 0 0 0.53 1.00 -9048 MS4A8B membrane-spanning 4-domains, subfamily A, member 8B 174048 2 2 1 1 2 0 0 0 0 0 0.53 1.00 -9049 LILRA3 leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 301784 2 2 2 1 1 0 1 0 0 0 0.53 1.00 -9050 PTCH1 patched homolog 1 (Drosophila) 985164 9 9 9 8 6 1 1 0 1 0 0.53 1.00 -9051 CALCB calcitonin-related polypeptide beta 88704 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -9052 NIF3L1 NIF3 NGG1 interacting factor 3-like 1 (S. pombe) 243488 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -9053 TXNRD2 thioredoxin reductase 2 316524 3 3 3 1 0 1 2 0 0 0 0.53 1.00 -9054 SERTAD4 SERTA domain containing 4 242592 2 2 2 1 1 1 0 0 0 0 0.53 1.00 -9055 SEPT5 septin 5 178892 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -9056 CPNE3 copine III 374976 3 2 3 1 0 1 1 0 1 0 0.53 1.00 -9057 PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta (congenital stationary night blindness 3, autosomal dominant) 542500 5 4 5 0 2 1 1 0 1 0 0.53 1.00 -9058 HSPH1 heat shock 105kDa/110kDa protein 1 593376 3 3 3 1 0 1 0 0 2 0 0.53 1.00 -9059 PRKCI protein kinase C, iota 417088 4 4 3 0 4 0 0 0 0 0 0.53 1.00 -9060 TSGA13 testis specific, 13 191744 2 2 2 1 0 1 1 0 0 0 0.53 1.00 -9061 C11orf54 chromosome 11 open reading frame 54 185024 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -9062 SLC45A4 solute carrier family 45, member 4 498372 5 5 5 1 2 2 1 0 0 0 0.53 1.00 -9063 PRKG2 protein kinase, cGMP-dependent, type II 528864 5 4 5 2 0 4 0 0 1 0 0.53 1.00 -9064 NR4A3 nuclear receptor subfamily 4, group A, member 3 366576 4 3 4 0 2 1 0 0 1 0 0.53 1.00 -9065 APOM apolipoprotein M 97916 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -9066 STK10 serine/threonine kinase 10 655304 5 5 5 3 2 1 1 0 1 0 0.53 1.00 -9067 MRGPRX2 MAS-related GPR, member X2 223328 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -9068 NCR1 natural cytotoxicity triggering receptor 1 211232 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -9069 FABP6 fatty acid binding protein 6, ileal (gastrotropin) 124992 1 1 1 1 0 1 0 0 0 0 0.53 1.00 -9070 COL28A1 collagen, type XXVIII, alpha 1 787136 6 5 6 0 2 3 1 0 0 0 0.53 1.00 -9071 C1orf107 chromosome 1 open reading frame 107 519456 5 4 5 1 1 1 3 0 0 0 0.53 1.00 -9072 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 630336 8 6 8 3 4 2 1 1 0 0 0.53 1.00 -9073 SDHD succinate dehydrogenase complex, subunit D, integral membrane protein 106820 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -9074 ESAM endothelial cell adhesion molecule 264432 3 2 3 3 0 2 1 0 0 0 0.53 1.00 -9075 TICAM1 toll-like receptor adaptor molecule 1 445424 2 2 2 2 0 0 1 0 1 0 0.53 1.00 -9076 SON SON DNA binding protein 1646680 12 9 12 2 3 5 3 0 1 0 0.53 1.00 -9077 ALG12 asparagine-linked glycosylation 12 homolog (S. cerevisiae, alpha-1,6-mannosyltransferase) 329112 2 2 2 0 1 0 0 0 1 0 0.53 1.00 -9078 LAMA3 laminin, alpha 3 2274076 18 14 18 4 6 9 2 0 1 0 0.53 1.00 -9079 SOX10 SRY (sex determining region Y)-box 10 256508 3 3 3 2 3 0 0 0 0 0 0.53 1.00 -9080 RIBC1 RIB43A domain with coiled-coils 1 265040 2 2 2 1 2 0 0 0 0 0 0.53 1.00 -9081 TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 523432 4 4 4 1 1 1 1 0 1 0 0.53 1.00 -9082 ADAT1 adenosine deaminase, tRNA-specific 1 346080 2 2 2 1 1 0 1 0 0 0 0.53 1.00 -9083 AZIN1 antizyme inhibitor 1 310688 2 2 2 0 0 2 0 0 0 0 0.53 1.00 -9084 STAMBPL1 STAM binding protein-like 1 302624 2 2 2 0 0 1 0 0 1 0 0.53 1.00 -9085 CHST5 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 216508 3 3 3 0 2 1 0 0 0 0 0.53 1.00 -9086 ATCAY ataxia, cerebellar, Cayman type (caytaxin) 244552 4 3 4 2 1 1 1 1 0 0 0.53 1.00 -9087 PLXND1 plexin D1 1073332 13 11 13 3 9 3 1 0 0 0 0.53 1.00 -9088 SOSTDC1 sclerostin domain containing 1 140896 1 1 1 0 1 0 0 0 0 0 0.53 1.00 -9089 SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 297976 3 3 3 3 3 0 0 0 0 0 0.53 1.00 -9090 PDCD6IP programmed cell death 6 interacting protein 568376 4 3 4 2 2 1 0 0 1 0 0.53 1.00 -9091 SLC6A16 solute carrier family 6, member 16 505120 3 3 3 2 2 1 0 0 0 0 0.53 1.00 -9092 PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit 233856 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -9093 WDHD1 WD repeat and HMG-box DNA binding protein 1 781760 8 5 8 1 3 3 0 0 2 0 0.53 1.00 -9094 B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 253464 2 2 2 1 1 1 0 0 0 0 0.53 1.00 -9095 NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa 80892 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -9096 VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae) 600544 4 4 4 1 1 1 2 0 0 0 0.53 1.00 -9097 KHNYN 459144 3 3 3 0 2 0 0 0 1 0 0.53 1.00 -9098 CD200 CD200 molecule 202336 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -9099 GARS glycyl-tRNA synthetase 482332 3 3 3 1 2 0 0 0 1 0 0.53 1.00 -9100 PORCN porcupine homolog (Drosophila) 307232 2 2 2 1 0 1 0 0 1 0 0.53 1.00 -9101 TMEM150C 174272 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -9102 DPCD 133216 1 1 1 0 1 0 0 0 0 0 0.53 1.00 -9103 C6orf170 chromosome 6 open reading frame 170 874048 11 6 10 4 0 6 4 0 1 0 0.53 1.00 -9104 SLC1A5 solute carrier family 1 (neutral amino acid transporter), member 5 289212 3 3 3 0 2 0 1 0 0 0 0.53 1.00 -9105 DDX42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 646240 5 5 5 0 3 1 0 0 1 0 0.53 1.00 -9106 SDS serine dehydratase 227024 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -9107 KIAA0754 906704 8 5 8 0 1 5 1 0 1 0 0.53 1.00 -9108 CC2D1B coiled-coil and C2 domain containing 1B 590204 4 4 4 2 3 0 0 0 1 0 0.53 1.00 -9109 UQCRC1 ubiquinol-cytochrome c reductase core protein I 306348 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -9110 RHBG Rh family, B glycoprotein 308224 3 3 3 1 1 0 2 0 0 0 0.53 1.00 -9111 BMP4 bone morphogenetic protein 4 272608 2 2 2 0 2 0 0 0 0 0 0.53 1.00 -9112 SLC34A1 solute carrier family 34 (sodium phosphate), member 1 437472 3 3 3 2 1 1 0 0 1 0 0.53 1.00 -9113 PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 637728 3 3 3 2 0 0 1 0 2 0 0.53 1.00 -9114 GALM galactose mutarotase (aldose 1-epimerase) 236768 2 1 2 0 0 0 1 0 1 0 0.53 1.00 -9115 RPL4 ribosomal protein L4 296576 2 2 2 1 2 0 0 0 0 0 0.53 1.00 -9116 ZRANB1 zinc finger, RAN-binding domain containing 1 484428 2 2 2 0 0 2 0 0 0 0 0.53 1.00 -9117 PLA2G1B phospholipase A2, group IB (pancreas) 103712 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -9118 ZSCAN2 zinc finger and SCAN domain containing 2 435232 5 4 5 2 2 2 1 0 0 0 0.53 1.00 -9119 CIC capicua homolog (Drosophila) 945700 6 5 6 1 2 2 0 0 2 0 0.53 1.00 -9120 MAS1 MAS1 oncogene 219968 2 2 2 0 1 0 1 0 0 0 0.53 1.00 -9121 SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) 212352 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -9122 CNTFR ciliary neurotrophic factor receptor 237968 2 2 2 1 2 0 0 0 0 0 0.53 1.00 -9123 CCDC46 coiled-coil domain containing 46 694208 7 5 7 1 2 2 3 0 0 0 0.53 1.00 -9124 KRTAP10-12 keratin associated protein 10-12 160664 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -9125 ZNF628 zinc finger protein 628 384236 3 3 3 1 1 0 1 0 1 0 0.53 1.00 -9126 RHOBTB2 Rho-related BTB domain containing 2 499520 5 5 5 1 3 2 0 0 0 0 0.53 1.00 -9127 PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 831908 8 7 8 3 1 6 1 0 0 0 0.53 1.00 -9128 IPO9 importin 9 713544 5 5 5 0 2 2 0 1 0 0 0.53 1.00 -9129 ZCCHC4 zinc finger, CCHC domain containing 4 357056 3 3 3 0 1 1 1 0 0 0 0.53 1.00 -9130 PRDM11 PR domain containing 11 348572 2 2 2 3 0 1 1 0 0 0 0.53 1.00 -9131 WDR31 WD repeat domain 31 255360 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -9132 C17orf28 chromosome 17 open reading frame 28 491460 4 4 4 1 2 1 1 0 0 0 0.53 1.00 -9133 LHFPL5 lipoma HMGIC fusion partner-like 5 150528 2 2 2 2 1 1 0 0 0 0 0.53 1.00 -9134 HOXD10 homeobox D10 212548 2 2 2 1 2 0 0 0 0 0 0.53 1.00 -9135 NPAS2 neuronal PAS domain protein 2 566104 5 5 5 2 3 2 0 0 0 0 0.53 1.00 -9136 ZNF687 zinc finger protein 687 814992 5 5 5 1 1 1 2 0 1 0 0.53 1.00 -9137 TNNC2 troponin C type 2 (fast) 113568 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -9138 CRY1 cryptochrome 1 (photolyase-like) 404460 5 3 5 1 3 0 1 0 1 0 0.53 1.00 -9139 FAM83B family with sequence similarity 83, member B 683648 6 4 6 0 2 3 0 0 1 0 0.53 1.00 -9140 RNASE3 ribonuclease, RNase A family, 3 (eosinophil cationic protein) 109088 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -9141 MRPL46 mitochondrial ribosomal protein L46 191744 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -9142 DUSP5 dual specificity phosphatase 5 198632 2 2 2 1 1 0 1 0 0 0 0.53 1.00 -9143 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 115360 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -9144 SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter family), member 1 239680 2 2 2 1 0 1 1 0 0 0 0.53 1.00 -9145 OSBPL5 oxysterol binding protein-like 5 523476 4 4 4 1 1 2 0 0 1 0 0.53 1.00 -9146 CLTCL1 clathrin, heavy chain-like 1 1093240 9 8 8 3 8 1 0 0 0 0 0.53 1.00 -9147 EPHA8 EPH receptor A8 669956 6 6 6 0 4 0 0 1 1 0 0.53 1.00 -9148 HIP1 huntingtin interacting protein 1 703740 6 5 6 4 1 2 1 0 0 2 0.53 1.00 -9149 NQO2 NAD(P)H dehydrogenase, quinone 2 161280 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -9150 C19orf61 chromosome 19 open reading frame 61 352784 3 3 3 2 1 2 0 0 0 0 0.53 1.00 -9151 C3AR1 complement component 3a receptor 1 325472 4 3 4 2 3 0 1 0 0 0 0.53 1.00 -9152 MPZL1 myelin protein zero-like 1 165536 1 1 1 1 0 1 0 0 0 0 0.53 1.00 -9153 CLCN1 chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant) 636692 6 5 6 4 2 3 0 0 1 0 0.53 1.00 -9154 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 264096 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -9155 TTLL3 tubulin tyrosine ligase-like family, member 3 530208 4 4 4 1 2 0 2 0 0 0 0.53 1.00 -9156 CTNS cystinosis, nephropathic 282912 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -9157 PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) 566944 4 4 4 0 0 3 0 0 1 0 0.53 1.00 -9158 C16orf46 chromosome 16 open reading frame 46 274176 2 2 2 1 0 2 0 0 0 0 0.53 1.00 -9159 MAPKAPK3 mitogen-activated protein kinase-activated protein kinase 3 261548 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -9160 CARD9 caspase recruitment domain family, member 9 242380 2 2 2 0 1 0 0 0 1 0 0.54 1.00 -9161 C12orf41 chromosome 12 open reading frame 41 323584 3 2 3 0 1 1 0 0 1 0 0.54 1.00 -9162 QPCT glutaminyl-peptide cyclotransferase (glutaminyl cyclase) 237720 2 2 2 1 0 1 1 0 0 0 0.54 1.00 -9163 MMP14 matrix metallopeptidase 14 (membrane-inserted) 377888 4 4 4 1 2 1 1 0 0 0 0.54 1.00 -9164 HDAC1 histone deacetylase 1 318040 2 2 2 0 1 0 1 0 0 0 0.54 1.00 -9165 PRRT2 proline-rich transmembrane protein 2 222600 1 1 1 0 0 0 0 0 1 0 0.54 1.00 -9166 ZNF70 zinc finger protein 70 301280 3 3 2 2 1 2 0 0 0 0 0.54 1.00 -9167 DSCAM Down syndrome cell adhesion molecule 1376928 12 9 12 10 5 2 3 0 2 0 0.54 1.00 -9168 TRADD TNFRSF1A-associated via death domain 108080 1 1 1 1 0 1 0 0 0 0 0.54 1.00 -9169 BTN2A1 butyrophilin, subfamily 2, member A1 367136 2 2 2 0 1 1 0 0 0 0 0.54 1.00 -9170 FUBP1 far upstream element (FUSE) binding protein 1 451360 2 2 2 3 0 1 0 0 1 0 0.54 1.00 -9171 C14orf37 chromosome 14 open reading frame 37 527072 4 4 4 1 0 3 1 0 0 0 0.54 1.00 -9172 LRRC57 leucine rich repeat containing 57 165760 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9173 HYLS1 hydrolethalus syndrome 1 202496 3 2 3 0 0 3 0 0 0 0 0.54 1.00 -9174 CES3 carboxylesterase 3 (brain) 396032 3 3 3 1 0 2 1 0 0 0 0.54 1.00 -9175 UFD1L ubiquitin fusion degradation 1 like (yeast) 217140 4 2 4 0 2 1 1 0 0 0 0.54 1.00 -9176 ZNF563 zinc finger protein 563 324128 4 3 3 1 1 3 0 0 0 0 0.54 1.00 -9177 CCBL1 cysteine conjugate-beta lyase, cytoplasmic 295008 3 3 3 0 2 1 0 0 0 0 0.54 1.00 -9178 ORC5L origin recognition complex, subunit 5-like (yeast) 327488 1 1 1 0 0 0 0 0 1 0 0.54 1.00 -9179 SNX12 sorting nexin 12 112984 1 1 1 1 1 0 0 0 0 0 0.54 1.00 -9180 TMEM150B 160192 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9181 ENOPH1 enolase-phosphatase 1 181440 2 2 2 1 1 0 1 0 0 0 0.54 1.00 -9182 CRTC2 CREB regulated transcription coactivator 2 476560 5 4 5 1 4 1 0 0 0 0 0.54 1.00 -9183 HRASLS2 HRAS-like suppressor 2 113120 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9184 P2RX4 purinergic receptor P2X, ligand-gated ion channel, 4 258888 3 3 3 1 1 0 1 0 1 0 0.54 1.00 -9185 C15orf32 chromosome 15 open reading frame 32 122976 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9186 RAVER2 ribonucleoprotein, PTB-binding 2 410368 3 3 3 3 2 0 1 0 0 0 0.54 1.00 -9187 RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 409472 3 3 3 2 1 1 0 0 1 0 0.54 1.00 -9188 OR4L1 olfactory receptor, family 4, subfamily L, member 1 208920 4 2 4 0 1 3 0 0 0 0 0.54 1.00 -9189 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 449344 3 3 3 1 3 0 0 0 0 0 0.54 1.00 -9190 EEF1B2 eukaryotic translation elongation factor 1 beta 2 156576 1 1 1 0 0 0 0 0 1 0 0.54 1.00 -9191 GNPDA2 glucosamine-6-phosphate deaminase 2 191520 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9192 GZMH granzyme H (cathepsin G-like 2, protein h-CCPX) 170464 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -9193 KIAA0232 KIAA0232 945280 7 6 7 3 3 2 1 0 1 0 0.54 1.00 -9194 MTBP Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa 627872 5 4 5 1 1 3 1 0 0 0 0.54 1.00 -9195 TRAF3IP1 TNF receptor-associated factor 3 interacting protein 1 422664 2 2 2 1 0 0 1 0 1 0 0.54 1.00 -9196 TMEM62 transmembrane protein 62 404096 3 3 3 0 1 1 1 0 0 0 0.54 1.00 -9197 TMEM45B transmembrane protein 45B 185600 2 2 2 0 1 0 1 0 0 0 0.54 1.00 -9198 CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 416556 4 4 4 0 3 1 0 0 0 0 0.54 1.00 -9199 C11orf71 chromosome 11 open reading frame 71 67704 1 1 1 2 0 1 0 0 0 0 0.54 1.00 -9200 SFRS2IP splicing factor, arginine/serine-rich 2, interacting protein 996352 3 3 3 0 1 0 1 0 1 0 0.54 1.00 -9201 RASEF RAS and EF-hand domain containing 456932 4 3 4 0 1 1 1 0 1 0 0.54 1.00 -9202 GTPBP3 GTP binding protein 3 (mitochondrial) 317972 3 3 3 2 1 0 1 0 1 0 0.54 1.00 -9203 FSTL4 follistatin-like 4 574224 3 3 3 1 0 0 1 1 1 0 0.54 1.00 -9204 RIMBP3 RIMS binding protein 3 323972 2 2 2 1 0 1 1 0 0 0 0.54 1.00 -9205 PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 524776 4 4 4 1 2 2 0 0 0 0 0.54 1.00 -9206 LAMC1 laminin, gamma 1 (formerly LAMB2) 1077524 11 8 11 5 4 5 1 0 1 0 0.54 1.00 -9207 MSH3 mutS homolog 3 (E. coli) 775760 7 5 7 0 0 5 2 0 0 0 0.54 1.00 -9208 TMEM18 transmembrane protein 18 99232 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -9209 C19orf66 179108 1 1 1 2 0 0 0 0 1 0 0.54 1.00 -9210 SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 276416 2 2 2 0 1 0 1 0 0 0 0.54 1.00 -9211 ITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) 731472 5 3 5 0 0 1 2 0 2 0 0.54 1.00 -9212 ZNF445 zinc finger protein 445 698880 7 6 6 1 1 4 2 0 0 0 0.54 1.00 -9213 REP15 160160 1 1 1 1 0 0 1 0 0 0 0.54 1.00 -9214 OR52N2 olfactory receptor, family 52, subfamily N, member 2 217280 1 1 1 1 0 1 0 0 0 0 0.54 1.00 -9215 ZNF623 zinc finger protein 623 361760 5 3 5 1 2 3 0 0 0 0 0.54 1.00 -9216 PPIP5K2 847840 5 5 5 1 2 2 0 0 1 0 0.54 1.00 -9217 MKRN3 makorin, ring finger protein, 3 333704 3 3 3 2 0 3 0 0 0 0 0.54 1.00 -9218 DNM3 dynamin 3 588136 7 5 7 2 2 3 2 0 0 0 0.54 1.00 -9219 TMEM38A transmembrane protein 38A 206892 2 2 2 0 1 1 0 0 0 0 0.54 1.00 -9220 PACS1 phosphofurin acidic cluster sorting protein 1 609688 5 5 5 3 2 2 1 0 0 0 0.54 1.00 -9221 ZNF234 zinc finger protein 234 473984 2 2 2 0 0 1 0 0 1 0 0.54 1.00 -9222 HOXC9 homeobox C9 137340 1 1 1 1 0 0 0 0 1 0 0.54 1.00 -9223 IL31RA interleukin 31 receptor A 527520 5 4 5 1 0 4 1 0 0 0 0.54 1.00 -9224 PDPN podoplanin 155400 1 1 1 1 1 0 0 0 0 0 0.54 1.00 -9225 ZNF408 zinc finger protein 408 419272 4 4 4 1 3 1 0 0 0 0 0.54 1.00 -9226 BBS5 Bardet-Biedl syndrome 5 240576 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9227 SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 288216 2 2 2 2 0 1 1 0 0 0 0.54 1.00 -9228 TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 299048 1 1 1 0 0 0 0 0 1 0 0.54 1.00 -9229 MREG melanoregulin 126784 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -9230 SPRY4 sprouty homolog 4 (Drosophila) 207760 2 2 2 1 1 1 0 0 0 0 0.54 1.00 -9231 PCGF6 polycomb group ring finger 6 187352 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -9232 SSX3 synovial sarcoma, X breakpoint 3 143808 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9233 TRAIP TRAF interacting protein 329280 2 2 2 0 1 0 0 0 1 0 0.54 1.00 -9234 PSAPL1 prosaposin-like 1 327948 2 2 2 0 0 1 0 0 1 0 0.54 1.00 -9235 XDH xanthine dehydrogenase 917960 7 6 7 5 1 2 3 0 1 0 0.54 1.00 -9236 NRIP3 nuclear receptor interacting protein 3 135184 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9237 MED18 mediator complex subunit 18 142240 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -9238 CSN2 casein beta 157920 1 1 1 2 0 0 1 0 0 0 0.54 1.00 -9239 OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 181048 2 2 2 0 1 1 0 0 0 0 0.54 1.00 -9240 SPDYE1 224616 2 2 2 1 0 2 0 0 0 0 0.54 1.00 -9241 TMEM194A 259392 3 2 3 0 1 1 1 0 0 0 0.54 1.00 -9242 UBQLN2 ubiquilin 2 389656 3 2 3 1 1 0 1 0 1 0 0.54 1.00 -9243 CLN6 ceroid-lipofuscinosis, neuronal 6, late infantile, variant 194432 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -9244 C13orf34 chromosome 13 open reading frame 34 386176 2 2 2 2 1 1 0 0 0 0 0.54 1.00 -9245 PRPF4B PRP4 pre-mRNA processing factor 4 homolog B (yeast) 684696 9 4 9 0 1 2 4 1 1 0 0.54 1.00 -9246 BAHD1 bromo adjacent homology domain containing 1 489216 4 4 4 0 0 2 0 1 1 0 0.54 1.00 -9247 NDUFS2 NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) 326592 3 2 3 0 2 0 0 0 1 0 0.54 1.00 -9248 BTLA B and T lymphocyte associated 199360 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9249 PRAMEF10 PRAME family member 10 192836 2 2 2 0 0 2 0 0 0 0 0.54 1.00 -9250 PLDN pallidin homolog (mouse) 119784 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9251 AAGAB 219272 1 1 1 1 0 0 0 0 1 0 0.54 1.00 -9252 LPCAT4 340448 2 2 2 0 0 2 0 0 0 0 0.54 1.00 -9253 TNFSF11 tumor necrosis factor (ligand) superfamily, member 11 185164 1 1 1 3 0 0 0 0 1 0 0.54 1.00 -9254 CCNYL1 cyclin Y-like 1 204064 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -9255 UBN2 845376 4 4 4 3 2 1 0 0 1 0 0.54 1.00 -9256 KBTBD8 kelch repeat and BTB (POZ) domain containing 8 392000 4 3 3 2 2 1 0 0 1 0 0.54 1.00 -9257 RAB26 RAB26, member RAS oncogene family 110836 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9258 TM7SF3 transmembrane 7 superfamily member 3 385400 3 3 3 1 1 1 1 0 0 0 0.54 1.00 -9259 CELF3 280248 3 3 3 1 1 2 0 0 0 0 0.54 1.00 -9260 BRAP BRCA1 associated protein 401884 3 3 3 1 1 1 0 0 1 0 0.54 1.00 -9261 SLC39A12 solute carrier family 39 (zinc transporter), member 12 450016 4 3 4 1 0 2 2 0 0 0 0.54 1.00 -9262 ZNF519 zinc finger protein 519 366240 3 2 3 1 0 1 1 0 1 0 0.54 1.00 -9263 RNF115 204120 2 1 2 0 0 1 0 0 1 0 0.54 1.00 -9264 LPAR6 232736 3 2 3 1 1 0 2 0 0 0 0.54 1.00 -9265 SMAD1 SMAD family member 1 318528 2 2 2 1 1 1 0 0 0 0 0.54 1.00 -9266 NUDT16 nudix (nucleoside diphosphate linked moiety X)-type motif 16 102732 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -9267 TET3 tet oncogene family member 3 1053288 6 6 6 3 3 1 1 0 1 0 0.54 1.00 -9268 PITRM1 pitrilysin metallopeptidase 1 621224 4 4 4 1 2 0 2 0 0 0 0.54 1.00 -9269 FSCN3 fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) 338256 2 2 2 1 1 0 0 0 1 0 0.54 1.00 -9270 PAIP1 poly(A) binding protein interacting protein 1 272160 4 2 3 0 1 1 1 1 0 0 0.54 1.00 -9271 SENP2 SUMO1/sentrin/SMT3 specific peptidase 2 411712 3 3 3 0 1 0 2 0 0 0 0.54 1.00 -9272 C2orf51 chromosome 2 open reading frame 51 124320 1 1 1 1 0 1 0 0 0 0 0.54 1.00 -9273 SNRNP200 1476384 9 9 9 7 3 3 1 0 2 0 0.54 1.00 -9274 ZZEF1 zinc finger, ZZ-type with EF-hand domain 1 1971256 13 12 13 4 6 2 2 0 3 0 0.54 1.00 -9275 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 329700 2 2 2 1 0 1 0 0 1 0 0.54 1.00 -9276 HSD17B14 hydroxysteroid (17-beta) dehydrogenase 14 190176 3 2 3 0 2 1 0 0 0 0 0.54 1.00 -9277 DSC3 desmocollin 3 607712 4 4 4 2 1 3 0 0 0 0 0.54 1.00 -9278 SAMD10 sterile alpha motif domain containing 10 111048 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -9279 CH25H cholesterol 25-hydroxylase 179728 2 2 2 0 1 1 0 0 0 0 0.54 1.00 -9280 SLC2A12 solute carrier family 2 (facilitated glucose transporter), member 12 419776 3 3 3 3 0 2 1 0 0 0 0.54 1.00 -9281 BMF Bcl2 modifying factor 127008 1 1 1 1 0 0 1 0 0 0 0.54 1.00 -9282 RAD51L1 RAD51-like 1 (S. cerevisiae) 263956 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -9283 HIBCH 3-hydroxyisobutyryl-Coenzyme A hydrolase 272608 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -9284 TSPAN7 tetraspanin 7 165976 1 1 1 2 1 0 0 0 0 0 0.54 1.00 -9285 NSMCE4A non-SMC element 4 homolog A (S. cerevisiae) 202048 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9286 SRGN serglycin 109536 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9287 RTN4RL1 reticulon 4 receptor-like 1 277416 3 3 3 0 2 0 1 0 0 0 0.55 1.00 -9288 GCC1 GRIP and coiled-coil domain containing 1 523264 5 4 5 1 1 1 1 1 1 0 0.55 1.00 -9289 LDHB lactate dehydrogenase B 231392 3 2 3 0 0 3 0 0 0 0 0.55 1.00 -9290 TRMT5 TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) 347200 4 2 4 0 1 1 1 0 1 0 0.55 1.00 -9291 IRF3 interferon regulatory factor 3 288584 2 2 2 0 2 0 0 0 0 0 0.55 1.00 -9292 DHRS7C dehydrogenase/reductase (SDR family) member 7C 214496 2 2 2 0 0 1 1 0 0 0 0.55 1.00 -9293 CEACAM7 carcinoembryonic antigen-related cell adhesion molecule 7 182336 2 2 2 1 1 1 0 0 0 0 0.55 1.00 -9294 LBX2 ladybird homeobox 2 125188 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -9295 ZNF286A zinc finger protein 286A 349688 7 3 7 1 1 6 0 0 0 0 0.55 1.00 -9296 KTELC1 KTEL (Lys-Tyr-Glu-Leu) containing 1 273952 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9297 OR10G3 olfactory receptor, family 10, subfamily G, member 3 211904 1 1 1 2 1 0 0 0 0 0 0.55 1.00 -9298 FCGR1A Fc fragment of IgG, high affinity Ia, receptor (CD64) 243208 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9299 BTBD16 BTB (POZ) domain containing 16 354144 4 3 4 1 2 1 1 0 0 0 0.55 1.00 -9300 IL2RA interleukin 2 receptor, alpha 190624 2 2 2 1 2 0 0 0 0 0 0.55 1.00 -9301 HLA-C major histocompatibility complex, class I, C 215740 2 2 2 0 0 1 0 1 0 0 0.55 1.00 -9302 ANKRD34B ankyrin repeat domain 34B 346976 2 2 2 1 1 1 0 0 0 0 0.55 1.00 -9303 PNMA3 paraneoplastic antigen MA3 312368 2 2 2 0 0 0 1 0 1 0 0.55 1.00 -9304 RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) 504000 3 3 3 0 2 0 1 0 0 0 0.55 1.00 -9305 MTUS1 mitochondrial tumor suppressor 1 938112 11 6 11 5 2 5 3 0 1 0 0.55 1.00 -9306 PBLD phenazine biosynthesis-like protein domain containing 204512 1 1 1 1 0 1 0 0 0 0 0.55 1.00 -9307 C3orf15 chromosome 3 open reading frame 15 530376 4 4 4 1 1 0 2 0 1 0 0.55 1.00 -9308 FAM153A family with sequence similarity 153, member A 150696 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9309 NBPF7 neuroblastoma breakpoint family, member 7 290752 2 2 2 0 0 0 2 0 0 0 0.55 1.00 -9310 CORO6 coronin 6 281344 2 2 2 2 0 0 1 0 1 0 0.55 1.00 -9311 ALKBH7 alkB, alkylation repair homolog 7 (E. coli) 101472 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9312 RND3 Rho family GTPase 3 169120 2 2 2 0 1 1 0 0 0 0 0.55 1.00 -9313 VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) 550816 3 3 3 0 1 0 1 0 1 0 0.55 1.00 -9314 PDK1 pyruvate dehydrogenase kinase, isozyme 1 269780 2 2 2 0 0 0 1 0 1 0 0.55 1.00 -9315 LYG2 lysozyme G-like 2 147616 1 1 1 2 0 0 1 0 0 0 0.55 1.00 -9316 MUTYH mutY homolog (E. coli) 383768 2 2 2 3 1 0 0 0 1 0 0.55 1.00 -9317 VTI1A vesicle transport through interaction with t-SNAREs homolog 1A (yeast) 153664 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9318 RAD9B RAD9 homolog B (S. cerevisiae) 295768 4 2 4 0 0 3 0 0 1 0 0.55 1.00 -9319 GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 218664 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9320 SNRPC small nuclear ribonucleoprotein polypeptide C 112896 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -9321 PTCH2 patched homolog 2 (Drosophila) 802976 6 6 6 0 3 3 0 0 0 0 0.55 1.00 -9322 CADPS2 Ca2+-dependent activator protein for secretion 2 825680 7 5 7 0 3 0 3 0 1 0 0.55 1.00 -9323 MCM4 minichromosome maintenance complex component 4 578368 4 4 4 1 2 0 1 0 1 0 0.55 1.00 -9324 NLRC4 NLR family, CARD domain containing 4 695968 12 6 10 4 4 4 3 1 0 0 0.55 1.00 -9325 TMEM214 444192 3 3 3 2 0 3 0 0 0 0 0.55 1.00 -9326 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 452928 4 3 4 0 1 1 1 0 1 0 0.55 1.00 -9327 DIRAS3 DIRAS family, GTP-binding RAS-like 3 155456 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9328 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 260064 1 1 1 1 0 1 0 0 0 0 0.55 1.00 -9329 GP2 glycoprotein 2 (zymogen granule membrane) 368480 4 4 3 3 3 1 0 0 0 0 0.55 1.00 -9330 FAM118B family with sequence similarity 118, member B 242816 3 2 3 1 2 0 1 0 0 0 0.55 1.00 -9331 MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 465920 3 3 3 0 2 0 0 0 1 0 0.55 1.00 -9332 TCF4 transcription factor 4 467712 4 4 4 0 2 1 1 0 0 0 0.55 1.00 -9333 TMEM64 transmembrane protein 64 129368 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9334 PLEKHF2 pleckstrin homology domain containing, family F (with FYVE domain) member 2 168896 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -9335 TM4SF20 transmembrane 4 L six family member 20 158144 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -9336 FAM127A family with sequence similarity 127, member A 77504 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9337 OPALIN 103712 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9338 GYG2 glycogenin 2 318264 3 3 3 2 2 1 0 0 0 0 0.55 1.00 -9339 GOPC golgi associated PDZ and coiled-coil motif containing 316932 3 3 3 0 2 1 0 0 0 0 0.55 1.00 -9340 FAM186B 607040 5 4 5 0 3 1 0 0 1 0 0.55 1.00 -9341 SCN1B sodium channel, voltage-gated, type I, beta 144032 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9342 PINK1 PTEN induced putative kinase 1 320208 3 3 3 1 1 1 1 0 0 0 0.55 1.00 -9343 NSUN6 NOL1/NOP2/Sun domain family, member 6 325696 2 2 2 0 0 1 0 0 1 0 0.55 1.00 -9344 THOC3 THO complex 3 178688 2 2 2 0 1 1 0 0 0 0 0.55 1.00 -9345 HSPBP1 210680 2 2 2 0 0 1 1 0 0 0 0.55 1.00 -9346 PPP1CC protein phosphatase 1, catalytic subunit, gamma isoform 218344 2 2 2 0 0 2 0 0 0 0 0.55 1.00 -9347 PXMP4 peroxisomal membrane protein 4, 24kDa 146048 2 1 2 0 1 0 1 0 0 0 0.55 1.00 -9348 C6orf26 chromosome 6 open reading frame 26 102676 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9349 AP2B1 adaptor-related protein complex 2, beta 1 subunit 658560 4 4 4 1 0 2 0 0 2 0 0.55 1.00 -9350 ZBTB25 zinc finger and BTB domain containing 25 294784 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -9351 GDPD4 glycerophosphodiester phosphodiesterase domain containing 4 363552 3 2 3 1 0 1 1 0 1 0 0.55 1.00 -9352 CRELD1 cysteine-rich with EGF-like domains 1 336224 2 2 2 0 1 1 0 0 0 0 0.55 1.00 -9353 SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 741132 8 6 8 5 4 1 2 0 1 0 0.55 1.00 -9354 PRKD2 protein kinase D2 586320 5 5 5 3 3 0 1 0 1 0 0.55 1.00 -9355 WHAMM 358200 4 3 4 4 3 1 0 0 0 0 0.55 1.00 -9356 DHRS4L1 dehydrogenase/reductase (SDR family) member 4 like 1 183088 1 1 1 2 0 1 0 0 0 0 0.55 1.00 -9357 TRIM26 tripartite motif-containing 26 257348 2 2 2 2 1 1 0 0 0 0 0.55 1.00 -9358 MRPL3 mitochondrial ribosomal protein L3 242228 1 1 1 1 0 0 1 0 0 0 0.55 1.00 -9359 CDYL2 chromodomain protein, Y-like 2 338072 5 4 5 1 1 3 1 0 0 0 0.55 1.00 -9360 BMPER BMP binding endothelial regulator 474432 5 4 5 2 2 3 0 0 0 0 0.55 1.00 -9361 ANKRD27 ankyrin repeat domain 27 (VPS9 domain) 727664 6 6 6 0 3 1 1 0 1 0 0.55 1.00 -9362 MMP26 matrix metallopeptidase 26 181440 2 1 2 1 0 1 0 0 1 0 0.55 1.00 -9363 IGLL1 immunoglobulin lambda-like polypeptide 1 107296 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9364 ZNF365 zinc finger protein 365 474712 5 3 5 2 0 5 0 0 0 0 0.55 1.00 -9365 SFXN4 sideroflexin 4 239680 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9366 NDUFA10 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa 230496 2 2 2 2 1 1 0 0 0 0 0.55 1.00 -9367 TMEM222 131576 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9368 GAR1 151872 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9369 NAV2 neuron navigator 2 1657432 17 14 17 8 9 5 3 0 0 0 0.55 1.00 -9370 EIF5 eukaryotic translation initiation factor 5 299264 3 2 3 0 0 0 3 0 0 0 0.55 1.00 -9371 FRZB frizzled-related protein 213244 2 2 2 0 1 0 1 0 0 0 0.55 1.00 -9372 CD19 CD19 molecule 360500 3 2 3 1 1 1 0 0 1 0 0.55 1.00 -9373 SMEK2 SMEK homolog 2, suppressor of mek1 (Dictyostelium) 527520 4 3 4 0 0 1 1 0 2 0 0.55 1.00 -9374 RS1 retinoschisis (X-linked, juvenile) 1 156576 2 2 2 3 2 0 0 0 0 0 0.55 1.00 -9375 ZNF548 zinc finger protein 548 367136 5 3 5 2 1 2 1 0 1 0 0.55 1.00 -9376 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) 95152 1 1 1 1 1 0 0 0 0 0 0.55 1.00 -9377 CCM2 cerebral cavernous malformation 2 306288 3 2 3 0 1 0 0 0 0 2 0.55 1.00 -9378 POP5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) 112924 2 1 2 0 0 1 1 0 0 0 0.55 1.00 -9379 CECR1 cat eye syndrome chromosome region, candidate 1 359660 2 2 2 4 1 1 0 0 0 0 0.55 1.00 -9380 TREML4 triggering receptor expressed on myeloid cells-like 4 139552 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9381 PNP 198216 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9382 POLR3K polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa 75936 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -9383 IREB2 iron-responsive element binding protein 2 667520 6 4 6 1 2 3 0 0 1 0 0.55 1.00 -9384 SGPL1 sphingosine-1-phosphate lyase 1 394912 3 3 3 2 3 0 0 0 0 0 0.55 1.00 -9385 ANGPTL3 angiopoietin-like 3 316064 2 2 2 1 1 1 0 0 0 0 0.55 1.00 -9386 SLC4A3 solute carrier family 4, anion exchanger, member 3 832656 8 6 8 5 4 1 2 0 1 0 0.55 1.00 -9387 FANCG Fanconi anemia, complementation group G 431200 4 3 4 1 1 2 0 0 1 0 0.55 1.00 -9388 CYP4A11 cytochrome P450, family 4, subfamily A, polypeptide 11 360192 3 3 3 3 1 2 0 0 0 0 0.55 1.00 -9389 ODF3L2 74508 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9390 DLX2 distal-less homeobox 2 150228 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9391 KRT17 keratin 17 282940 2 2 2 0 2 0 0 0 0 0 0.55 1.00 -9392 HIST2H3D histone cluster 2, H3d 92960 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9393 GBX1 gastrulation brain homeobox 1 153076 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -9394 ZXDC ZXD family zinc finger C 428424 3 3 3 1 0 2 1 0 0 0 0.55 1.00 -9395 SLC28A2 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 458080 2 2 2 0 0 1 1 0 0 0 0.55 1.00 -9396 FAM124A family with sequence similarity 124A 321748 4 4 4 3 2 1 1 0 0 0 0.55 1.00 -9397 ZNF462 zinc finger protein 462 1695456 12 10 12 8 7 0 3 0 2 0 0.55 1.00 -9398 SLC25A30 solute carrier family 25, member 30 204288 2 2 2 1 0 2 0 0 0 0 0.55 1.00 -9399 PGAM5 phosphoglycerate mutase family member 5 112420 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9400 ZNF197 zinc finger protein 197 705376 4 4 4 2 0 3 0 0 1 0 0.55 1.00 -9401 IVNS1ABP influenza virus NS1A binding protein 443744 5 3 5 0 2 2 1 0 0 0 0.55 1.00 -9402 RNPS1 RNA binding protein S1, serine-rich domain 192920 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -9403 TAS2R60 taste receptor, type 2, member 60 215264 2 2 2 0 2 0 0 0 0 0 0.55 1.00 -9404 TMEM186 transmembrane protein 186 145600 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) 156576 1 1 1 2 1 0 0 0 0 0 0.56 1.00 -9406 C12orf48 chromosome 12 open reading frame 48 343392 2 2 2 1 1 0 1 0 0 0 0.56 1.00 -9407 NCOA7 nuclear receptor coactivator 7 647136 5 4 5 1 0 2 2 1 0 0 0.56 1.00 -9408 PCDHGB3 protocadherin gamma subfamily B, 3 615944 8 6 8 0 5 2 1 0 0 0 0.56 1.00 -9409 KIAA1328 KIAA1328 373288 2 2 2 0 0 1 0 0 1 0 0.56 1.00 -9410 MAGOHB mago-nashi homolog B (Drosophila) 104608 1 1 1 1 1 0 0 0 0 0 0.56 1.00 -9411 MTX2 metaxin 2 182672 1 1 1 1 0 0 1 0 0 0 0.56 1.00 -9412 TNFAIP8L3 tumor necrosis factor, alpha-induced protein 8-like 3 166432 1 1 1 2 0 1 0 0 0 0 0.56 1.00 -9413 MYL7 myosin, light chain 7, regulatory 124544 1 1 1 2 0 1 0 0 0 0 0.56 1.00 -9414 PADI1 peptidyl arginine deiminase, type I 458140 4 4 4 1 2 1 1 0 0 0 0.56 1.00 -9415 SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 476168 4 4 4 1 1 3 0 0 0 0 0.56 1.00 -9416 C6orf192 chromosome 6 open reading frame 192 312984 2 2 2 0 1 1 0 0 0 0 0.56 1.00 -9417 WDFY2 WD repeat and FYVE domain containing 2 280224 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9418 BCL2L12 BCL2-like 12 (proline rich) 188400 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -9419 ZNF711 zinc finger protein 711 517076 2 2 2 0 0 1 1 0 0 0 0.56 1.00 -9420 TMEM87B transmembrane protein 87B 369908 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9421 SLC16A14 solute carrier family 16, member 14 (monocarboxylic acid transporter 14) 343616 3 3 3 4 0 0 2 0 1 0 0.56 1.00 -9422 CATSPER2 cation channel, sperm associated 2 369740 2 2 2 1 0 0 1 0 1 0 0.56 1.00 -9423 ACTB actin, beta 209524 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9424 PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 426720 3 3 3 1 0 2 0 0 1 0 0.56 1.00 -9425 CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 721968 7 5 6 7 4 0 1 0 0 2 0.56 1.00 -9426 FOXR1 forkhead box R1 193432 2 2 2 1 1 1 0 0 0 0 0.56 1.00 -9427 ADRB3 adrenergic, beta-3-, receptor 108404 1 1 1 2 1 0 0 0 0 0 0.56 1.00 -9428 RBM9 RNA binding motif protein 9 282912 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9429 PRPF38A PRP38 pre-mRNA processing factor 38 (yeast) domain containing A 219296 2 2 2 0 0 1 1 0 0 0 0.56 1.00 -9430 CLSPN claspin homolog (Xenopus laevis) 922880 6 5 6 2 2 1 3 0 0 0 0.56 1.00 -9431 C15orf52 chromosome 15 open reading frame 52 322148 2 2 2 1 0 0 1 0 1 0 0.56 1.00 -9432 RGS5 regulator of G-protein signaling 5 126784 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9433 KIAA1033 KIAA1033 809656 8 6 8 0 3 3 2 0 0 0 0.56 1.00 -9434 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 277984 3 2 3 1 0 2 0 0 1 0 0.56 1.00 -9435 SLC6A2 solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 425292 4 4 3 4 3 0 1 0 0 0 0.56 1.00 -9436 SLAMF7 SLAM family member 7 232064 2 2 2 1 1 1 0 0 0 0 0.56 1.00 -9437 HDDC2 HD domain containing 2 123424 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9438 OR51E2 olfactory receptor, family 51, subfamily E, member 2 216608 2 2 2 0 1 1 0 0 0 0 0.56 1.00 -9439 NUB1 negative regulator of ubiquitin-like proteins 1 408288 4 3 3 3 2 2 0 0 0 0 0.56 1.00 -9440 FUT10 fucosyltransferase 10 (alpha (1,3) fucosyltransferase) 326144 3 3 3 5 1 1 1 0 0 0 0.56 1.00 -9441 ZDHHC4 zinc finger, DHHC-type containing 4 237216 1 1 1 2 0 0 0 0 1 0 0.56 1.00 -9442 SPESP1 sperm equatorial segment protein 1 235480 2 2 2 0 0 2 0 0 0 0 0.56 1.00 -9443 NEIL3 nei endonuclease VIII-like 3 (E. coli) 411404 3 3 3 1 1 1 1 0 0 0 0.56 1.00 -9444 PRAF2 PRA1 domain family, member 2 72056 1 1 1 2 1 0 0 0 0 0 0.56 1.00 -9445 TPRG1 tumor protein p63 regulated 1 189952 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -9446 TIMELESS timeless homolog (Drosophila) 837536 5 5 5 2 0 3 0 0 2 0 0.56 1.00 -9447 ACTR1A ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 263200 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9448 BUD13 BUD13 homolog (S. cerevisiae) 408072 4 4 4 0 2 1 1 0 0 0 0.56 1.00 -9449 TAAR9 trace amine associated receptor 9 235424 3 2 3 3 0 2 1 0 0 0 0.56 1.00 -9450 SALL3 sal-like 3 (Drosophila) 501676 5 5 5 2 4 1 0 0 0 0 0.56 1.00 -9451 KAT2B 518896 8 3 8 1 1 3 0 0 1 3 0.56 1.00 -9452 ITGA7 integrin, alpha 7 814704 6 6 6 4 3 2 1 0 0 0 0.56 1.00 -9453 ERGIC3 ERGIC and golgi 3 273364 2 2 2 0 0 1 1 0 0 0 0.56 1.00 -9454 ARFGAP2 ADP-ribosylation factor GTPase activating protein 2 356824 3 3 3 2 1 1 0 0 1 0 0.56 1.00 -9455 SPATA20 spermatogenesis associated 20 478240 3 3 3 1 1 1 1 0 0 0 0.56 1.00 -9456 HOXD4 homeobox D4 147028 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9457 MRPS2 mitochondrial ribosomal protein S2 176092 2 2 2 0 2 0 0 0 0 0 0.56 1.00 -9458 C12orf35 chromosome 12 open reading frame 35 1176420 10 7 10 1 2 4 3 0 1 0 0.56 1.00 -9459 RCN3 reticulocalbin 3, EF-hand calcium binding domain 186928 2 2 2 0 2 0 0 0 0 0 0.56 1.00 -9460 ACCSL 394912 4 3 4 1 1 1 1 0 1 0 0.56 1.00 -9461 TDRD7 tudor domain containing 7 752864 6 5 6 0 2 0 4 0 0 0 0.56 1.00 -9462 MAGEH1 melanoma antigen family H, 1 148316 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9463 PCDHGB4 protocadherin gamma subfamily B, 4 592064 4 4 4 1 3 0 0 0 1 0 0.56 1.00 -9464 CLEC12B C-type lectin domain family 12, member B 161056 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -9465 OSCP1 300160 2 2 2 1 0 0 2 0 0 0 0.56 1.00 -9466 TMEM111 transmembrane protein 111 183232 1 1 1 2 0 1 0 0 0 0 0.56 1.00 -9467 ACN9 ACN9 homolog (S. cerevisiae) 86464 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9468 VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) 397152 3 3 3 0 1 2 0 0 0 0 0.56 1.00 -9469 BCL7C B-cell CLL/lymphoma 7C 151788 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -9470 MPZL3 myelin protein zero-like 3 163968 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9471 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) 267008 3 3 3 2 1 2 0 0 0 0 0.56 1.00 -9472 BARX2 BARX homeobox 2 191744 2 2 2 2 0 2 0 0 0 0 0.56 1.00 -9473 SLC14A1 solute carrier family 14 (urea transporter), member 1 (Kidd blood group) 271488 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9474 ERCC1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 237216 2 2 2 2 0 2 0 0 0 0 0.56 1.00 -9475 CCT4 chaperonin containing TCP1, subunit 4 (delta) 369208 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9476 DDX49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 321164 3 3 3 0 2 0 1 0 0 0 0.56 1.00 -9477 ARCN1 archain 1 353024 3 3 3 0 1 1 1 0 0 0 0.56 1.00 -9478 EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 384384 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -9479 THTPA thiamine triphosphatase 156016 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9480 CRKL v-crk sarcoma virus CT10 oncogene homolog (avian)-like 202440 2 2 2 1 1 0 1 0 0 0 0.56 1.00 -9481 TLX3 T-cell leukemia homeobox 3 124336 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -9482 RANBP17 RAN binding protein 17 751968 5 3 5 3 0 1 2 0 0 2 0.56 1.00 -9483 TMEM169 transmembrane protein 169 202048 1 1 1 1 1 0 0 0 0 0 0.56 1.00 -9484 PCIF1 470032 3 3 3 2 0 0 2 0 1 0 0.56 1.00 -9485 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 340928 2 2 2 3 1 1 0 0 0 0 0.56 1.00 -9486 TGFB1 transforming growth factor, beta 1 186964 1 1 1 1 0 0 0 0 1 0 0.56 1.00 -9487 STRN striatin, calmodulin binding protein 500948 3 3 3 1 0 1 2 0 0 0 0.56 1.00 -9488 TPD52L3 tumor protein D52-like 3 114464 1 1 1 2 1 0 0 0 0 0 0.56 1.00 -9489 MGMT O-6-methylguanine-DNA methyltransferase 128072 1 1 1 1 0 0 0 0 1 0 0.56 1.00 -9490 FRS2 fibroblast growth factor receptor substrate 2 346528 4 3 4 0 1 2 1 0 0 0 0.56 1.00 -9491 DLL1 delta-like 1 (Drosophila) 384348 4 3 4 3 3 0 0 0 1 0 0.56 1.00 -9492 IRF1 interferon regulatory factor 1 226968 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9493 GNAT3 guanine nucleotide binding protein, alpha transducing 3 244096 2 2 2 0 0 2 0 0 0 0 0.56 1.00 -9494 FKBP7 FK506 binding protein 7 153440 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9495 LEMD3 LEM domain containing 3 502628 7 5 7 1 3 3 1 0 0 0 0.56 1.00 -9496 MOGAT1 monoacylglycerol O-acyltransferase 1 209568 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -9497 TTC39B 437024 3 3 3 3 0 2 1 0 0 0 0.56 1.00 -9498 GPRC5A G protein-coupled receptor, family C, group 5, member A 243264 2 2 1 2 2 0 0 0 0 0 0.56 1.00 -9499 TNK1 tyrosine kinase, non-receptor, 1 368032 3 3 3 1 1 2 0 0 0 0 0.56 1.00 -9500 ALG1L 103264 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9501 ACAA2 acetyl-Coenzyme A acyltransferase 2 261736 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -9502 ZCRB1 zinc finger CCHC-type and RNA binding motif 1 152768 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9503 CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 443744 4 3 4 1 3 1 0 0 0 0 0.56 1.00 -9504 SRD5A1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 142072 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9505 CLIC5 chloride intracellular channel 5 167556 2 2 2 0 2 0 0 0 0 0 0.56 1.00 -9506 TBX1 T-box 1 217728 2 2 2 1 0 1 0 0 1 0 0.56 1.00 -9507 AVIL advillin 568064 4 4 4 2 1 2 1 0 0 0 0.56 1.00 -9508 SLC30A4 solute carrier family 30 (zinc transporter), member 4 295232 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9509 INSIG1 insulin induced gene 1 204176 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9510 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 233408 2 2 2 0 1 0 1 0 0 0 0.56 1.00 -9511 CHEK1 CHK1 checkpoint homolog (S. pombe) 331296 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -9512 LSP1 lymphocyte-specific protein 1 205720 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -9513 FAM55C family with sequence similarity 55, member C 380800 3 3 3 1 0 2 1 0 0 0 0.56 1.00 -9514 PA2G4 proliferation-associated 2G4, 38kDa 277088 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9515 FAM172A 289184 2 2 2 0 0 1 1 0 0 0 0.56 1.00 -9516 MTX1 metaxin 1 160412 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9517 LSAMP limbic system-associated membrane protein 234080 3 2 3 1 2 0 1 0 0 0 0.56 1.00 -9518 PSMA5 proteasome (prosome, macropain) subunit, alpha type, 5 170688 1 1 1 1 0 0 1 0 0 0 0.56 1.00 -9519 INF2 inverted formin, FH2 and WH2 domain containing 515140 3 3 3 1 0 0 0 0 3 0 0.56 1.00 -9520 P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6 174944 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9521 LYPD6B 134816 1 1 1 1 1 0 0 0 0 0 0.56 1.00 -9522 OAZ2 ornithine decarboxylase antizyme 2 115248 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9523 PDCD2L programmed cell death 2-like 218960 1 1 1 3 0 0 1 0 0 0 0.56 1.00 -9524 LACTB2 lactamase, beta 2 200208 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -9525 SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa 264868 3 2 3 2 0 0 3 0 0 0 0.56 1.00 -9526 WDYHV1 124320 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9527 TNKS1BP1 tankyrase 1 binding protein 1, 182kDa 1115928 7 6 7 4 2 3 2 0 0 0 0.56 1.00 -9528 TFIP11 tuftelin interacting protein 11 573888 4 4 4 1 1 0 3 0 0 0 0.56 1.00 -9529 TNP2 transition protein 2 (during histone to protamine replacement) 95200 1 1 1 1 1 0 0 0 0 0 0.56 1.00 -9530 ZAK 641400 6 4 6 1 1 3 1 0 1 0 0.56 1.00 -9531 ANXA1 annexin A1 243936 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9532 HUS1B HUS1 checkpoint homolog b (S. pombe) 160076 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -9533 MMD monocyte to macrophage differentiation-associated 166880 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -9534 NUDT13 nudix (nucleoside diphosphate linked moiety X)-type motif 13 244384 2 2 2 0 1 1 0 0 0 0 0.56 1.00 -9535 PGR progesterone receptor 458164 4 4 4 0 2 1 0 0 1 0 0.56 1.00 -9536 MAEA macrophage erythroblast attacher 272160 4 3 4 1 4 0 0 0 0 0 0.56 1.00 -9537 ZNF223 zinc finger protein 223 328160 2 2 2 1 1 0 1 0 0 0 0.56 1.00 -9538 SEC22C SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 219968 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -9539 CLDN19 claudin 19 144520 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -9540 NINL 912940 11 9 10 2 11 0 0 0 0 0 0.56 1.00 -9541 MDP1 124320 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -9542 ZFYVE1 zinc finger, FYVE domain containing 1 528808 6 4 6 0 4 1 0 1 0 0 0.57 1.00 -9543 ITGB1BP3 integrin beta 1 binding protein 3 132052 1 1 1 2 1 0 0 0 0 0 0.57 1.00 -9544 DTNBP1 dystrobrevin binding protein 1 266448 1 1 1 1 0 0 0 0 1 0 0.57 1.00 -9545 FIGF c-fos induced growth factor (vascular endothelial growth factor D) 244832 2 2 2 1 0 2 0 0 0 0 0.57 1.00 -9546 PPP1R16B protein phosphatase 1, regulatory (inhibitor) subunit 16B 367780 6 4 6 4 5 0 1 0 0 0 0.57 1.00 -9547 MBNL2 muscleblind-like 2 (Drosophila) 278516 3 2 3 1 1 0 2 0 0 0 0.57 1.00 -9548 CD300LB CD300 molecule-like family member b 164192 1 1 1 2 0 1 0 0 0 0 0.57 1.00 -9549 DIO2 deiodinase, iodothyronine, type II 208832 1 1 1 2 1 0 0 0 0 0 0.57 1.00 -9550 DPH5 DPH5 homolog (S. cerevisiae) 198464 1 1 1 0 0 0 0 0 1 0 0.57 1.00 -9551 NIPAL1 279120 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9552 PEX5 peroxisomal biogenesis factor 5 442624 3 3 3 1 2 0 0 0 1 0 0.57 1.00 -9553 NR2F1 nuclear receptor subfamily 2, group F, member 1 218400 3 3 3 3 2 0 1 0 0 0 0.57 1.00 -9554 VSIG2 V-set and immunoglobulin domain containing 2 219128 2 2 2 0 1 0 0 0 1 0 0.57 1.00 -9555 PLEKHA8 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 294472 3 2 3 0 0 2 1 0 0 0 0.57 1.00 -9556 DCAF11 380128 3 3 3 1 1 1 0 0 1 0 0.57 1.00 -9557 FRK fyn-related kinase 347200 4 3 4 0 2 1 1 0 0 0 0.57 1.00 -9558 ART1 ADP-ribosyltransferase 1 220052 2 2 2 0 0 2 0 0 0 0 0.57 1.00 -9559 TSSC1 tumor suppressing subtransferable candidate 1 260176 2 2 2 1 2 0 0 0 0 0 0.57 1.00 -9560 NONO non-POU domain containing, octamer-binding 296496 2 2 2 0 1 1 0 0 0 0 0.57 1.00 -9561 CCDC109B coiled-coil domain containing 109B 174944 1 1 1 1 0 0 1 0 0 0 0.57 1.00 -9562 NFE2L1 nuclear factor (erythroid-derived 2)-like 1 523936 4 4 4 2 1 2 1 0 0 0 0.57 1.00 -9563 MRAS muscle RAS oncogene homolog 144928 1 1 1 1 1 0 0 0 0 0 0.57 1.00 -9564 PARL presenilin associated, rhomboid-like 253232 2 2 2 1 1 1 0 0 0 0 0.57 1.00 -9565 WBP11 WW domain binding protein 11 441280 2 2 2 1 0 1 0 0 1 0 0.57 1.00 -9566 HSPA4L heat shock 70kDa protein 4-like 581504 4 4 4 3 1 1 2 0 0 0 0.57 1.00 -9567 CCNT1 cyclin T1 496608 3 3 3 1 2 0 0 0 1 0 0.57 1.00 -9568 SLC7A10 solute carrier family 7, (neutral amino acid transporter, y+ system) member 10 337336 3 3 3 1 2 1 0 0 0 0 0.57 1.00 -9569 GEMIN4 gem (nuclear organelle) associated protein 4 665364 3 3 3 1 0 1 0 0 2 0 0.57 1.00 -9570 TLCD1 TLC domain containing 1 145096 1 1 1 0 0 0 0 1 0 0 0.57 1.00 -9571 ZNF416 zinc finger protein 416 395136 3 3 3 2 1 1 1 0 0 0 0.57 1.00 -9572 PSMD8 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 128196 1 1 1 1 0 1 0 0 0 0 0.57 1.00 -9573 NMT2 N-myristoyltransferase 2 346080 3 2 3 0 0 2 0 0 1 0 0.57 1.00 -9574 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 147392 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9575 ZNF584 zinc finger protein 584 284088 2 2 2 1 0 2 0 0 0 0 0.57 1.00 -9576 GEN1 Gen homolog 1, endonuclease (Drosophila) 622496 6 4 5 1 2 1 2 0 1 0 0.57 1.00 -9577 SHOX2 short stature homeobox 2 176284 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -9578 RECK reversion-inducing-cysteine-rich protein with kazal motifs 648704 5 5 5 1 3 0 1 0 1 0 0.57 1.00 -9579 ELL elongation factor RNA polymerase II 372400 3 3 3 1 1 0 0 0 2 0 0.57 1.00 -9580 GEFT 439768 2 2 2 0 2 0 0 0 0 0 0.57 1.00 -9581 HIPK1 homeodomain interacting protein kinase 1 850080 6 6 6 3 2 2 2 0 0 0 0.57 1.00 -9582 XYLT1 xylosyltransferase I 573664 7 6 7 1 3 2 2 0 0 0 0.57 1.00 -9583 PPHLN1 periphilin 1 322028 2 2 2 2 1 1 0 0 0 0 0.57 1.00 -9584 CRISPLD2 cysteine-rich secretory protein LCCL domain containing 2 347200 4 3 4 1 1 1 1 0 1 0 0.57 1.00 -9585 LRCH2 leucine-rich repeats and calponin homology (CH) domain containing 2 350376 2 2 2 1 0 1 1 0 0 0 0.57 1.00 -9586 RNF144B ring finger 144B 210560 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9587 NRSN2 neurensin 2 139552 1 1 1 1 0 1 0 0 0 0 0.57 1.00 -9588 MIS12 MIS12, MIND kinetochore complex component, homolog (yeast) 139328 2 1 2 1 1 0 1 0 0 0 0.57 1.00 -9589 CPOX coproporphyrinogen oxidase 242956 1 1 1 2 0 0 1 0 0 0 0.57 1.00 -9590 SAFB scaffold attachment factor B 465160 3 3 3 1 1 1 0 0 1 0 0.57 1.00 -9591 UNC5B unc-5 homolog B (C. elegans) 604848 6 6 6 2 5 1 0 0 0 0 0.57 1.00 -9592 ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 351832 3 3 3 0 1 1 1 0 0 0 0.57 1.00 -9593 GPBAR1 G protein-coupled bile acid receptor 1 189504 2 2 2 0 1 1 0 0 0 0 0.57 1.00 -9594 FGD3 FYVE, RhoGEF and PH domain containing 3 498344 2 2 2 0 0 0 0 0 2 0 0.57 1.00 -9595 CD300LD CD300 molecule-like family member d 134624 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9596 ROBLD3 85568 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9597 GLT6D1 glycosyltransferase 6 domain containing 1 188636 2 2 2 2 1 1 0 0 0 0 0.57 1.00 -9598 MRPS27 mitochondrial ribosomal protein S27 288736 2 2 2 0 0 1 1 0 0 0 0.57 1.00 -9599 C8orf84 160580 2 2 2 0 1 0 1 0 0 0 0.57 1.00 -9600 LYPD6 LY6/PLAUR domain containing 6 119168 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9601 TBC1D19 TBC1 domain family, member 19 372960 1 1 1 0 0 0 0 0 1 0 0.57 1.00 -9602 ZNF432 zinc finger protein 432 442400 8 4 8 2 1 6 1 0 0 0 0.57 1.00 -9603 PLD2 phospholipase D2 649152 2 2 2 1 0 1 0 0 1 0 0.57 1.00 -9604 MACF1 microtubule-actin crosslinking factor 1 5113164 42 23 40 10 15 16 8 1 2 0 0.57 1.00 -9605 WNT5A wingless-type MMTV integration site family, member 5A 218920 3 2 3 1 1 0 1 0 1 0 0.57 1.00 -9606 RUNX3 runt-related transcription factor 3 201488 2 2 2 3 2 0 0 0 0 0 0.57 1.00 -9607 GPM6B glycoprotein M6B 247296 1 1 1 0 0 0 0 0 1 0 0.57 1.00 -9608 TYROBP TYRO protein tyrosine kinase binding protein 79576 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9609 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 366688 2 2 2 1 0 2 0 0 0 0 0.57 1.00 -9610 GMPR guanosine monophosphate reductase 220192 2 2 2 3 2 0 0 0 0 0 0.57 1.00 -9611 PTP4A2 protein tyrosine phosphatase type IVA, member 2 117376 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9612 ZNF185 zinc finger protein 185 (LIM domain) 386296 3 3 3 0 0 2 1 0 0 0 0.57 1.00 -9613 TDRKH tudor and KH domain containing 388416 2 2 2 2 2 0 0 0 0 0 0.57 1.00 -9614 TRIM10 tripartite motif-containing 10 258160 4 3 4 3 2 2 0 0 0 0 0.57 1.00 -9615 CTAGE1 cutaneous T-cell lymphoma-associated antigen 1 502208 3 3 3 1 0 2 1 0 0 0 0.57 1.00 -9616 SPTLC2 serine palmitoyltransferase, long chain base subunit 2 358624 2 2 2 2 0 1 0 1 0 0 0.57 1.00 -9617 KCNMB2 potassium large conductance calcium-activated channel, subfamily M, beta member 2 162176 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -9618 C14orf135 chromosome 14 open reading frame 135 639072 3 3 3 0 0 1 1 0 1 0 0.57 1.00 -9619 DALRD3 DALR anticodon binding domain containing 3 300916 2 2 2 0 1 0 0 0 1 0 0.57 1.00 -9620 MYD88 myeloid differentiation primary response gene (88) 195300 2 2 2 1 0 1 1 0 0 0 0.57 1.00 -9621 BLOC1S2 biogenesis of lysosome-related organelles complex-1, subunit 2 95480 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -9622 TUBGCP5 tubulin, gamma complex associated protein 5 696808 5 5 5 2 0 5 0 0 0 0 0.57 1.00 -9623 DDHD2 DDHD domain containing 2 495040 3 3 3 1 0 3 0 0 0 0 0.57 1.00 -9624 SLC13A2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 411488 6 4 6 2 3 3 0 0 0 0 0.57 1.00 -9625 DLL3 delta-like 3 (Drosophila) 252140 3 3 3 1 1 1 0 0 1 0 0.57 1.00 -9626 NFS1 NFS1 nitrogen fixation 1 homolog (S. cerevisiae) 296800 2 2 2 0 1 0 1 0 0 0 0.57 1.00 -9627 BOLA1 bolA homolog 1 (E. coli) 89516 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -9628 PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 207208 1 1 1 1 0 0 1 0 0 0 0.57 1.00 -9629 CLIP2 CAP-GLY domain containing linker protein 2 659940 5 5 5 2 2 0 1 1 1 0 0.57 1.00 -9630 STOML2 stomatin (EPB72)-like 2 248864 4 3 4 0 4 0 0 0 0 0 0.57 1.00 -9631 MORC3 MORC family CW-type zinc finger 3 637280 6 4 6 1 2 4 0 0 0 0 0.57 1.00 -9632 C8orf45 chromosome 8 open reading frame 45 406784 4 3 4 1 1 1 2 0 0 0 0.57 1.00 -9633 DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) 224084 2 2 2 1 1 1 0 0 0 0 0.57 1.00 -9634 CENPP centromere protein P 180208 1 1 1 1 0 1 0 0 0 0 0.57 1.00 -9635 IFRD2 interferon-related developmental regulator 2 275224 2 2 2 0 2 0 0 0 0 0 0.57 1.00 -9636 TMEM161A transmembrane protein 161A 284788 2 2 2 1 0 1 1 0 0 0 0.57 1.00 -9637 MPV17L2 111300 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -9638 OSM oncostatin M 160776 1 1 1 1 0 0 0 0 1 0 0.57 1.00 -9639 PPIH peptidylprolyl isomerase H (cyclophilin H) 127680 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9640 LPCAT2 lysophosphatidylcholine acyltransferase 2 357924 2 2 2 1 0 1 0 0 1 0 0.57 1.00 -9641 SAMD7 sterile alpha motif domain containing 7 304892 2 2 2 2 0 2 0 0 0 0 0.57 1.00 -9642 PDHB pyruvate dehydrogenase (lipoamide) beta 249368 2 2 2 1 0 2 0 0 0 0 0.57 1.00 -9643 ICOS inducible T-cell co-stimulator 138880 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -9644 IFITM2 interferon induced transmembrane protein 2 (1-8D) 90832 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9645 RHOBTB3 Rho-related BTB domain containing 3 422016 5 3 5 0 2 2 1 0 0 0 0.57 1.00 -9646 PRDM12 PR domain containing 12 158900 2 2 2 1 2 0 0 0 0 0 0.57 1.00 -9647 UCP3 uncoupling protein 3 (mitochondrial, proton carrier) 213164 2 2 2 0 1 0 1 0 0 0 0.57 1.00 -9648 NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 170240 1 1 1 0 0 0 0 0 1 0 0.57 1.00 -9649 CD207 CD207 molecule, langerin 226464 2 2 2 0 1 1 0 0 0 0 0.57 1.00 -9650 SFXN5 sideroflexin 5 223152 2 2 2 0 1 1 0 0 0 0 0.57 1.00 -9651 ACER2 185272 1 1 1 1 1 0 0 0 0 0 0.57 1.00 -9652 ZNF280A zinc finger protein 280A 365792 3 3 3 1 1 1 0 0 1 0 0.57 1.00 -9653 TUBA1B tubulin, alpha 1b 294728 2 2 2 0 1 1 0 0 0 0 0.57 1.00 -9654 SIPA1L3 signal-induced proliferation-associated 1 like 3 1065264 8 8 8 0 3 3 2 0 0 0 0.57 1.00 -9655 RNF14 ring finger protein 14 325472 2 2 2 0 0 1 1 0 0 0 0.57 1.00 -9656 SPTAN1 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) 1695132 14 11 14 7 7 2 1 0 2 2 0.57 1.00 -9657 KRT76 keratin 76 415712 2 2 2 2 0 2 0 0 0 0 0.57 1.00 -9658 DIAPH3 diaphanous homolog 3 (Drosophila) 818132 5 4 5 3 1 2 2 0 0 0 0.57 1.00 -9659 SGK223 828016 7 6 7 2 3 1 1 0 2 0 0.57 1.00 -9660 FOXN4 forkhead box N4 205820 2 2 2 3 2 0 0 0 0 0 0.57 1.00 -9661 UPK3B uroplakin 3B 204568 1 1 1 0 0 0 0 0 1 0 0.57 1.00 -9662 UTP3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) 323456 4 3 4 0 3 1 0 0 0 0 0.57 1.00 -9663 VNN2 vanin 2 356384 2 2 2 4 0 1 1 0 0 0 0.57 1.00 -9664 VPREB1 pre-B lymphocyte gene 1 96544 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -9665 RAB17 RAB17, member RAS oncogene family 147616 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -9666 SRBD1 S1 RNA binding domain 1 687232 6 4 6 0 1 2 2 0 1 0 0.57 1.00 -9667 ADK adenosine kinase 248440 1 1 1 1 0 0 0 0 1 0 0.57 1.00 -9668 UBL4B ubiquitin-like 4B 106820 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9669 ZMAT2 zinc finger, matrin type 2 139776 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -9670 EXOC6B exocyst complex component 6B 535592 4 4 4 0 2 2 0 0 0 0 0.57 1.00 -9671 DNAJC18 DnaJ (Hsp40) homolog, subfamily C, member 18 248416 3 2 3 1 2 0 1 0 0 0 0.57 1.00 -9672 RNF11 ring finger protein 11 106848 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9673 EPDR1 ependymin related protein 1 (zebrafish) 193956 1 1 1 1 0 1 0 0 0 0 0.57 1.00 -9674 BHLHE41 160568 1 1 1 2 0 1 0 0 0 0 0.57 1.00 -9675 ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 1572384 14 9 14 11 4 6 0 0 4 0 0.57 1.00 -9676 TRAK2 trafficking protein, kinesin binding 2 628320 5 5 5 1 2 1 1 0 1 0 0.57 1.00 -9677 HAS3 hyaluronan synthase 3 390488 4 4 4 2 3 1 0 0 0 0 0.57 1.00 -9678 SERPINA7 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 283136 1 1 1 2 0 0 1 0 0 0 0.57 1.00 -9679 ATXN7L2 ataxin 7-like 2 470988 3 3 3 1 1 1 0 0 1 0 0.57 1.00 -9680 L3MBTL3 l(3)mbt-like 3 (Drosophila) 543648 3 3 3 1 0 2 0 0 1 0 0.57 1.00 -9681 TMEM107 transmembrane protein 107 103264 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -9682 ACY1 aminoacylase 1 287308 2 2 2 1 0 0 2 0 0 0 0.57 1.00 -9683 CCDC66 coiled-coil domain containing 66 574784 3 3 3 0 0 2 0 0 1 0 0.57 1.00 -9684 WISP3 WNT1 inducible signaling pathway protein 3 255136 3 2 3 0 1 2 0 0 0 0 0.57 1.00 -9685 LCN9 lipocalin 9 122072 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -9686 AGPS alkylglycerone phosphate synthase 401632 3 3 3 4 1 1 1 0 0 0 0.57 1.00 -9687 TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa 236096 2 2 2 0 0 2 0 0 0 0 0.57 1.00 -9688 NKIRAS1 NFKB inhibitor interacting Ras-like 1 132384 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9689 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) 122752 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -9690 KARS lysyl-tRNA synthetase 448000 3 3 3 0 2 0 1 0 0 0 0.57 1.00 -9691 HGFAC HGF activator 280224 2 2 2 0 0 0 0 1 1 0 0.58 1.00 -9692 BID BH3 interacting domain death agonist 147168 1 1 1 1 0 1 0 0 0 0 0.58 1.00 -9693 ZC3H12A zinc finger CCCH-type containing 12A 395500 3 3 3 0 2 1 0 0 0 0 0.58 1.00 -9694 GAL3ST2 galactose-3-O-sulfotransferase 2 142884 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -9695 CCNY cyclin Y 227096 2 2 2 0 1 0 1 0 0 0 0.58 1.00 -9696 ZDHHC9 zinc finger, DHHC-type containing 9 253344 2 2 2 1 0 2 0 0 0 0 0.58 1.00 -9697 GJD2 gap junction protein, delta 2, 36kDa 218008 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -9698 ASGR2 asialoglycoprotein receptor 2 215880 2 2 2 0 0 2 0 0 0 0 0.58 1.00 -9699 BTN2A2 butyrophilin, subfamily 2, member A2 358400 4 3 4 1 2 2 0 0 0 0 0.58 1.00 -9700 BCL7B B-cell CLL/lymphoma 7B 128032 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -9701 PCDHGA12 protocadherin gamma subfamily A, 12 629188 8 7 8 2 6 1 1 0 0 0 0.58 1.00 -9702 ASCL4 achaete-scute complex homolog 4 (Drosophila) 77476 1 1 1 2 1 0 0 0 0 0 0.58 1.00 -9703 ISG20 interferon stimulated exonuclease gene 20kDa 124992 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -9704 CLINT1 clathrin interactor 1 420544 3 3 3 1 1 1 0 0 1 0 0.58 1.00 -9705 MRPL27 mitochondrial ribosomal protein L27 103712 1 1 1 1 0 1 0 0 0 0 0.58 1.00 -9706 VWA2 von Willebrand factor A domain containing 2 487996 5 5 5 1 3 2 0 0 0 0 0.58 1.00 -9707 PTPN9 protein tyrosine phosphatase, non-receptor type 9 395808 3 3 3 1 3 0 0 0 0 0 0.58 1.00 -9708 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 111860 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9709 BDKRB2 bradykinin receptor B2 265216 3 3 3 2 2 1 0 0 0 0 0.58 1.00 -9710 SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) 466368 6 4 6 1 5 0 0 0 1 0 0.58 1.00 -9711 GRIK5 glutamate receptor, ionotropic, kainate 5 568880 6 6 6 2 4 1 1 0 0 0 0.58 1.00 -9712 ZCCHC11 zinc finger, CCHC domain containing 11 1132096 10 6 10 4 4 4 1 0 1 0 0.58 1.00 -9713 CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 346108 3 3 3 1 0 0 3 0 0 0 0.58 1.00 -9714 MATN2 matrilin 2 659232 7 5 7 3 4 2 1 0 0 0 0.58 1.00 -9715 FAM98B family with sequence similarity 98, member B 245360 2 2 2 3 1 1 0 0 0 0 0.58 1.00 -9716 WIPI2 WD repeat domain, phosphoinositide interacting 2 311332 2 2 2 0 1 0 1 0 0 0 0.58 1.00 -9717 RELA v-rel reticuloendotheliosis viral oncogene homolog A, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3, p65 (avian) 339536 2 2 2 2 1 0 0 0 1 0 0.58 1.00 -9718 CLK4 CDC-like kinase 4 334656 2 2 2 1 1 0 1 0 0 0 0.58 1.00 -9719 CCDC134 coiled-coil domain containing 134 159936 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -9720 DBF4B DBF4 homolog B (S. cerevisiae) 425020 4 3 3 1 0 3 0 0 1 0 0.58 1.00 -9721 ZNF660 zinc finger protein 660 224000 1 1 1 1 0 1 0 0 0 0 0.58 1.00 -9722 C8orf79 chromosome 8 open reading frame 79 308448 2 2 2 0 1 1 0 0 0 0 0.58 1.00 -9723 ANKRD35 ankyrin repeat domain 35 682640 8 6 8 1 1 7 0 0 0 0 0.58 1.00 -9724 CHGA chromogranin A (parathyroid secretory protein 1) 202508 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -9725 EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 232376 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -9726 TARSL2 threonyl-tRNA synthetase-like 2 496216 3 3 3 0 1 1 0 0 1 0 0.58 1.00 -9727 PTTG1 pituitary tumor-transforming 1 140896 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -9728 RPL7 ribosomal protein L7 172452 1 1 1 1 1 0 0 0 0 0 0.58 1.00 -9729 GNPAT glyceronephosphate O-acyltransferase 471968 2 2 2 0 0 1 0 0 1 0 0.58 1.00 -9730 PEX1 peroxisome biogenesis factor 1 861280 4 3 4 2 0 2 0 0 2 0 0.58 1.00 -9731 RNF149 ring finger protein 149 227528 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -9732 C7orf41 chromosome 7 open reading frame 41 85640 1 1 1 1 0 1 0 0 0 0 0.58 1.00 -9733 OASL 2'-5'-oligoadenylate synthetase-like 351456 3 3 3 1 0 3 0 0 0 0 0.58 1.00 -9734 ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide 705152 4 4 4 5 1 0 2 0 1 0 0.58 1.00 -9735 KRTAP24-1 keratin associated protein 24-1 172256 1 1 1 2 0 1 0 0 0 0 0.58 1.00 -9736 ARL3 ADP-ribosylation factor-like 3 128352 1 1 1 2 0 1 0 0 0 0 0.58 1.00 -9737 MCM3 minichromosome maintenance complex component 3 558880 4 3 4 0 1 1 0 0 2 0 0.58 1.00 -9738 ACAT2 acetyl-Coenzyme A acetyltransferase 2 275520 2 2 2 0 0 2 0 0 0 0 0.58 1.00 -9739 TACR1 tachykinin receptor 1 279552 2 2 2 5 0 1 1 0 0 0 0.58 1.00 -9740 PUS3 pseudouridylate synthase 3 309960 3 3 3 0 2 1 0 0 0 0 0.58 1.00 -9741 REEP5 receptor accessory protein 5 132160 1 1 1 1 0 1 0 0 0 0 0.58 1.00 -9742 UBE2D3 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 125216 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9743 DPYSL4 dihydropyrimidinase-like 4 309488 3 3 3 2 2 1 0 0 0 0 0.58 1.00 -9744 PLXNC1 plexin C1 944304 9 7 7 3 8 0 0 0 1 0 0.58 1.00 -9745 DAGLB diacylglycerol lipase, beta 464856 3 3 3 1 1 1 0 0 1 0 0.58 1.00 -9746 SLC6A4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 435680 4 4 4 3 2 2 0 0 0 0 0.58 1.00 -9747 ZNF425 zinc finger protein 425 491540 5 4 5 5 3 2 0 0 0 0 0.58 1.00 -9748 NECAB2 N-terminal EF-hand calcium binding protein 2 225792 2 2 2 1 2 0 0 0 0 0 0.58 1.00 -9749 GPX8 143808 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9750 SIRPA signal-regulatory protein alpha 327936 2 2 2 0 0 1 0 0 1 0 0.58 1.00 -9751 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 502488 5 5 5 2 4 1 0 0 0 0 0.58 1.00 -9752 CCDC21 coiled-coil domain containing 21 524384 4 3 4 1 0 2 0 0 2 0 0.58 1.00 -9753 PDE1B phosphodiesterase 1B, calmodulin-dependent 373408 3 3 3 1 1 2 0 0 0 0 0.58 1.00 -9754 DNAJB14 DnaJ (Hsp40) homolog, subfamily B, member 14 262528 2 2 2 0 0 1 0 0 1 0 0.58 1.00 -9755 CASP10 caspase 10, apoptosis-related cysteine peptidase 394240 2 2 2 3 0 2 0 0 0 0 0.58 1.00 -9756 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 361536 2 2 2 1 0 1 1 0 0 0 0.58 1.00 -9757 AMAC1 acyl-malonyl condensing enzyme 1 228704 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -9758 EMG1 EMG1 nucleolar protein homolog (S. cerevisiae) 169792 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9759 HMBS hydroxymethylbilane synthase 238880 2 2 2 0 2 0 0 0 0 0 0.58 1.00 -9760 GINS4 GINS complex subunit 4 (Sld5 homolog) 156800 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -9761 DIABLO diablo homolog (Drosophila) 162120 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -9762 TRNT1 tRNA nucleotidyl transferase, CCA-adding, 1 298592 2 2 2 2 0 1 0 0 1 0 0.58 1.00 -9763 MMP2 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) 445704 5 4 5 3 2 2 1 0 0 0 0.58 1.00 -9764 DHX30 DEAH (Asp-Glu-Ala-His) box polypeptide 30 819308 7 7 7 5 4 0 2 1 0 0 0.58 1.00 -9765 C20orf4 chromosome 20 open reading frame 4 260904 2 2 2 0 2 0 0 0 0 0 0.58 1.00 -9766 KHSRP KH-type splicing regulatory protein 361416 2 2 2 1 2 0 0 0 0 0 0.58 1.00 -9767 MTERF mitochondrial transcription termination factor 270592 4 2 4 0 2 0 1 0 1 0 0.58 1.00 -9768 CDH7 cadherin 7, type 2 538048 4 4 4 0 1 2 0 0 1 0 0.58 1.00 -9769 HGF hepatocyte growth factor (hepapoietin A; scatter factor) 502880 8 3 7 2 1 5 0 0 2 0 0.58 1.00 -9770 ZDHHC17 zinc finger, DHHC-type containing 17 434080 2 2 2 0 0 0 1 0 1 0 0.58 1.00 -9771 CCDC140 coiled-coil domain containing 140 108584 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -9772 TNFAIP3 tumor necrosis factor, alpha-induced protein 3 538636 3 3 3 0 1 2 0 0 0 0 0.58 1.00 -9773 ZNF195 zinc finger protein 195 377608 2 2 2 0 1 0 1 0 0 0 0.58 1.00 -9774 YPEL1 yippee-like 1 (Drosophila) 84224 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -9775 RTCD1 RNA terminal phosphate cyclase domain 1 256480 2 2 2 0 0 2 0 0 0 0 0.58 1.00 -9776 PNO1 partner of NOB1 homolog (S. cerevisiae) 175784 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9777 NEK2 NIMA (never in mitosis gene a)-related kinase 2 306880 2 2 2 0 1 0 1 0 0 0 0.58 1.00 -9778 MMP12 matrix metallopeptidase 12 (macrophage elastase) 320080 3 2 3 1 1 0 2 0 0 0 0.58 1.00 -9779 XPNPEP3 X-prolyl aminopeptidase (aminopeptidase P) 3, putative 349832 3 3 3 0 1 0 2 0 0 0 0.58 1.00 -9780 KRT71 keratin 71 360056 3 3 3 2 3 0 0 0 0 0 0.58 1.00 -9781 ZNHIT1 zinc finger, HIT type 1 108640 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -9782 TTC21A tetratricopeptide repeat domain 21A 914368 8 7 7 1 4 3 1 0 0 0 0.58 1.00 -9783 HKDC1 hexokinase domain containing 1 632940 8 7 8 1 3 4 1 0 0 0 0.58 1.00 -9784 ATP6V1E1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 160608 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9785 BLK B lymphoid tyrosine kinase 330772 3 3 3 1 1 2 0 0 0 0 0.58 1.00 -9786 EDEM1 ER degradation enhancer, mannosidase alpha-like 1 401536 4 3 4 0 0 4 0 0 0 0 0.58 1.00 -9787 CCDC14 coiled-coil domain containing 14 529400 4 3 4 1 0 2 2 0 0 0 0.58 1.00 -9788 DNAJA4 DnaJ (Hsp40) homolog, subfamily A, member 4 286524 2 2 2 0 2 0 0 0 0 0 0.58 1.00 -9789 SNX30 sorting nexin family member 30 266560 2 2 2 0 1 0 1 0 0 0 0.58 1.00 -9790 HIST1H1B histone cluster 1, H1b 145208 1 1 1 2 0 0 1 0 0 0 0.58 1.00 -9791 ZFP36L1 zinc finger protein 36, C3H type-like 1 229516 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -9792 ABCC8 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 1071216 8 6 8 6 4 1 1 0 2 0 0.58 1.00 -9793 C1QTNF3 C1q and tumor necrosis factor related protein 3 220416 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -9794 MARK3 MAP/microtubule affinity-regulating kinase 3 518600 5 5 5 1 2 2 1 0 0 0 0.58 1.00 -9795 C15orf43 chromosome 15 open reading frame 43 154784 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9796 SMAD9 SMAD family member 9 294112 3 3 3 2 2 1 0 0 0 0 0.58 1.00 -9797 PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 2867184 27 15 26 5 4 14 7 0 2 0 0.58 1.00 -9798 ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa 211176 2 2 2 3 2 0 0 0 0 0 0.58 1.00 -9799 MAP3K3 mitogen-activated protein kinase kinase kinase 3 455616 3 3 3 2 2 0 1 0 0 0 0.58 1.00 -9800 MRPS9 mitochondrial ribosomal protein S9 276640 2 2 2 0 1 0 1 0 0 0 0.58 1.00 -9801 ETV4 ets variant gene 4 (E1A enhancer binding protein, E1AF) 324024 3 3 3 2 1 2 0 0 0 0 0.58 1.00 -9802 CEL carboxyl ester lipase (bile salt-stimulated lipase) 384852 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -9803 ATG9B ATG9 autophagy related 9 homolog B (S. cerevisiae) 339556 2 2 2 1 0 0 0 0 2 0 0.58 1.00 -9804 XIAP X-linked inhibitor of apoptosis 340032 2 2 2 0 0 0 2 0 0 0 0.58 1.00 -9805 METAP1 methionyl aminopeptidase 1 190176 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -9806 CKAP2 cytoskeleton associated protein 2 461496 2 2 2 2 0 1 0 0 1 0 0.58 1.00 -9807 MED9 mediator complex subunit 9 89152 1 1 1 1 1 0 0 0 0 0 0.58 1.00 -9808 TSR1 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) 552384 6 4 6 1 1 4 0 0 1 0 0.58 1.00 -9809 KRT33A keratin 33A 275240 2 2 2 0 1 0 1 0 0 0 0.58 1.00 -9810 FBXO38 F-box protein 38 817824 5 4 5 4 1 0 2 1 1 0 0.58 1.00 -9811 ST6GALNAC1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 411936 3 3 3 0 0 2 1 0 0 0 0.58 1.00 -9812 TAS2R14 taste receptor, type 2, member 14 214592 1 1 1 1 1 0 0 0 0 0 0.58 1.00 -9813 PRKX protein kinase, X-linked 193204 2 2 2 0 1 1 0 0 0 0 0.58 1.00 -9814 ZNF557 zinc finger protein 557 295008 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -9815 PCDHB9 protocadherin beta 9 500724 5 4 5 4 3 1 1 0 0 0 0.59 1.00 -9816 SPAG9 sperm associated antigen 9 900508 7 5 7 1 2 1 2 0 2 0 0.59 1.00 -9817 NUP188 nucleoporin 188kDa 1207360 8 7 8 1 3 1 2 0 2 0 0.59 1.00 -9818 CAST calpastatin 570080 2 2 2 1 0 0 0 0 2 0 0.59 1.00 -9819 C13orf33 chromosome 13 open reading frame 33 173880 2 2 2 0 0 2 0 0 0 0 0.59 1.00 -9820 GLYATL1 glycine-N-acyltransferase-like 1 224448 2 2 2 2 0 1 1 0 0 0 0.59 1.00 -9821 OR1E2 olfactory receptor, family 1, subfamily E, member 2 218624 1 1 1 1 1 0 0 0 0 0 0.59 1.00 -9822 TEKT4 tektin 4 249604 3 3 3 0 1 1 0 1 0 0 0.59 1.00 -9823 GFI1 growth factor independent 1 transcription repressor 200928 2 2 2 0 1 1 0 0 0 0 0.59 1.00 -9824 RBBP9 retinoblastoma binding protein 9 130144 1 1 1 1 0 1 0 0 0 0 0.59 1.00 -9825 RBPMS RNA binding protein with multiple splicing 173600 1 1 1 0 0 0 0 0 1 0 0.59 1.00 -9826 GPRC5C G protein-coupled receptor, family C, group 5, member C 332472 2 2 2 1 1 1 0 0 0 0 0.59 1.00 -9827 WDR13 WD repeat domain 13 326608 3 3 3 5 3 0 0 0 0 0 0.59 1.00 -9828 CILP cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 800296 6 6 6 9 4 1 1 0 0 0 0.59 1.00 -9829 ACSM2A acyl-CoA synthetase medium-chain family member 2A 399248 2 2 2 1 1 0 1 0 0 0 0.59 1.00 -9830 MPDU1 mannose-P-dolichol utilization defect 1 172928 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9831 COPS5 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) 232288 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9832 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 285824 2 2 2 0 2 0 0 0 0 0 0.59 1.00 -9833 AXL AXL receptor tyrosine kinase 619360 6 4 6 3 3 0 3 0 0 0 0.59 1.00 -9834 REV1 REV1 homolog (S. cerevisiae) 861056 7 6 7 7 3 2 1 0 1 0 0.59 1.00 -9835 BEST3 bestrophin 3 457632 4 3 4 0 0 3 1 0 0 0 0.59 1.00 -9836 GPR98 G protein-coupled receptor 98 4263728 37 17 36 8 6 8 17 0 6 0 0.59 1.00 -9837 ADRA1D adrenergic, alpha-1D-, receptor 232092 2 2 2 0 1 0 0 0 1 0 0.59 1.00 -9838 WDR88 WD repeat domain 88 324772 2 2 2 4 1 0 1 0 0 0 0.59 1.00 -9839 YES1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 375424 2 2 2 1 1 1 0 0 0 0 0.59 1.00 -9840 CLNS1A chloride channel, nucleotide-sensitive, 1A 153664 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9841 MRPL16 mitochondrial ribosomal protein L16 172928 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9842 SPIN1 spindlin 1 181216 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -9843 LIG3 ligase III, DNA, ATP-dependent 708736 5 5 5 3 0 1 4 0 0 0 0.59 1.00 -9844 IL1F7 interleukin 1 family, member 7 (zeta) 167552 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9845 HS3ST3B1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 157976 2 2 2 1 2 0 0 0 0 0 0.59 1.00 -9846 GLT25D1 glycosyltransferase 25 domain containing 1 340408 3 3 3 0 3 0 0 0 0 0 0.59 1.00 -9847 CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 239904 3 3 3 1 2 0 1 0 0 0 0.59 1.00 -9848 TMEM48 transmembrane protein 48 456064 3 3 3 2 1 2 0 0 0 0 0.59 1.00 -9849 NUDC nuclear distribution gene C homolog (A. nidulans) 218376 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9850 FAM175B 284088 2 2 2 1 0 0 1 0 1 0 0.59 1.00 -9851 KLK7 kallikrein-related peptidase 7 170544 1 1 1 1 0 0 1 0 0 0 0.59 1.00 -9852 NCDN neurochondrin 453852 3 3 3 2 3 0 0 0 0 0 0.59 1.00 -9853 ALOX5AP arachidonate 5-lipoxygenase-activating protein 113344 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9854 TLR9 toll-like receptor 9 672400 7 6 7 2 5 2 0 0 0 0 0.59 1.00 -9855 BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide (maple syrup urine disease) 244216 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9856 CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 314672 3 2 3 1 2 0 0 0 1 0 0.59 1.00 -9857 KDM2A 799456 5 5 5 1 3 1 1 0 0 0 0.59 1.00 -9858 TSNAXIP1 translin-associated factor X interacting protein 1 455392 4 3 4 1 1 2 0 0 1 0 0.59 1.00 -9859 SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1049660 7 7 6 4 3 2 2 0 0 0 0.59 1.00 -9860 ARL8A ADP-ribosylation factor-like 8A 131936 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9861 TMEM22 transmembrane protein 22 278432 2 2 2 2 0 2 0 0 0 0 0.59 1.00 -9862 FNDC4 fibronectin type III domain containing 4 163296 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -9863 TMEM200C 200424 2 2 2 2 1 0 0 0 1 0 0.59 1.00 -9864 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 245056 3 2 3 0 3 0 0 0 0 0 0.59 1.00 -9865 TMTC3 transmembrane and tetratricopeptide repeat containing 3 626528 5 3 5 0 1 3 1 0 0 0 0.59 1.00 -9866 HDGF hepatoma-derived growth factor (high-mobility group protein 1-like) 163128 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9867 LRRC27 leucine rich repeat containing 27 377344 2 2 2 1 0 1 0 0 1 0 0.59 1.00 -9868 KCTD11 potassium channel tetramerisation domain containing 11 135212 1 1 1 1 0 1 0 0 0 0 0.59 1.00 -9869 TXNL4A thioredoxin-like 4A 92948 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9870 HIST1H2BC histone cluster 1, H2bc 86240 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9871 TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 1301784 12 9 12 2 7 2 3 0 0 0 0.59 1.00 -9872 ABCB8 ATP-binding cassette, sub-family B (MDR/TAP), member 8 455504 5 5 4 0 5 0 0 0 0 0 0.59 1.00 -9873 THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand, megakaryocyte growth and development factor) 242368 2 2 2 2 1 1 0 0 0 0 0.59 1.00 -9874 TES testis derived transcript (3 LIM domains) 285640 2 2 2 2 1 1 0 0 0 0 0.59 1.00 -9875 ICK intestinal cell (MAK-like) kinase 437024 3 3 3 2 1 2 0 0 0 0 0.59 1.00 -9876 FAM117B 241024 2 2 2 1 2 0 0 0 0 0 0.59 1.00 -9877 IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta 527520 4 4 4 1 0 4 0 0 0 0 0.59 1.00 -9878 POLR3H polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 142212 1 1 1 1 0 0 1 0 0 0 0.59 1.00 -9879 LRRC43 leucine rich repeat containing 43 423528 4 3 4 2 1 1 0 0 2 0 0.59 1.00 -9880 FOLH1 folate hydrolase (prostate-specific membrane antigen) 1 510376 3 3 3 2 0 0 2 0 1 0 0.59 1.00 -9881 USP18 ubiquitin specific peptidase 18 242116 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9882 RABIF RAB interacting factor 82096 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9883 HOXA5 homeobox A5 161308 1 1 1 1 0 1 0 0 0 0 0.59 1.00 -9884 TRAPPC3 trafficking protein particle complex 3 126112 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9885 TUBB6 tubulin, beta 6 288960 3 3 3 2 2 1 0 0 0 0 0.59 1.00 -9886 SYT2 synaptotagmin II 289408 4 3 4 1 0 3 1 0 0 0 0.59 1.00 -9887 BEST1 bestrophin 1 351680 2 2 2 1 1 0 1 0 0 0 0.59 1.00 -9888 IFFO1 341460 1 1 1 3 0 0 0 0 1 0 0.59 1.00 -9889 CACNB4 calcium channel, voltage-dependent, beta 4 subunit 365664 2 2 2 4 1 0 1 0 0 0 0.59 1.00 -9890 GLRA2 glycine receptor, alpha 2 328608 2 2 2 2 1 0 1 0 0 0 0.59 1.00 -9891 SLC31A1 solute carrier family 31 (copper transporters), member 1 131936 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9892 WDR45L WDR45-like 234836 3 2 3 0 2 0 1 0 0 0 0.59 1.00 -9893 OR2A7 olfactory receptor, family 2, subfamily A, member 7 162960 1 1 1 1 0 1 0 0 0 0 0.59 1.00 -9894 UNC13A unc-13 homolog A (C. elegans) 1039552 14 10 14 5 8 6 0 0 0 0 0.59 1.00 -9895 ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 664832 4 4 4 0 1 1 2 0 0 0 0.59 1.00 -9896 ADAM22 ADAM metallopeptidase domain 22 656376 6 4 6 1 1 4 1 0 0 0 0.59 1.00 -9897 CD300LG CD300 molecule-like family member g 230048 1 1 1 1 0 0 1 0 0 0 0.59 1.00 -9898 EFCAB4A EF-hand calcium binding domain 4A 116564 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9899 PNPLA8 patatin-like phospholipase domain containing 8 534240 5 4 5 0 1 3 1 0 0 0 0.59 1.00 -9900 A2BP1 309316 2 2 2 3 2 0 0 0 0 0 0.59 1.00 -9901 SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4 293860 2 2 2 0 1 0 1 0 0 0 0.59 1.00 -9902 KIAA1462 KIAA1462 915684 10 6 10 6 3 4 1 0 2 0 0.59 1.00 -9903 FMOD fibromodulin 255136 2 2 2 2 1 1 0 0 0 0 0.59 1.00 -9904 THRAP3 thyroid hormone receptor associated protein 3 651392 5 4 4 4 2 1 0 0 2 0 0.59 1.00 -9905 DUSP18 dual specificity phosphatase 18 127904 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9906 TIMM44 translocase of inner mitochondrial membrane 44 homolog (yeast) 304920 2 2 2 0 1 0 0 0 1 0 0.59 1.00 -9907 TAF5L TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa 401408 2 2 2 0 0 0 1 0 1 0 0.59 1.00 -9908 KRTAP10-9 keratin associated protein 10-9 197792 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9909 COX11 COX11 homolog, cytochrome c oxidase assembly protein (yeast) 172088 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -9910 CREB3L4 cAMP responsive element binding protein 3-like 4 274176 1 1 1 2 0 1 0 0 0 0 0.59 1.00 -9911 KRT38 keratin 38 313376 2 2 2 1 2 0 0 0 0 0 0.59 1.00 -9912 ROBO4 roundabout homolog 4, magic roundabout (Drosophila) 664176 5 5 5 6 2 2 1 0 0 0 0.59 1.00 -9913 ZBTB39 zinc finger and BTB domain containing 39 480032 3 3 3 0 1 1 1 0 0 0 0.59 1.00 -9914 IRX1 iroquois homeobox 1 191492 2 2 2 3 2 0 0 0 0 0 0.59 1.00 -9915 C7orf30 chromosome 7 open reading frame 30 149224 2 2 2 1 0 2 0 0 0 0 0.59 1.00 -9916 MARCH2 membrane-associated ring finger (C3HC4) 2 169400 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9917 AP4E1 adaptor-related protein complex 4, epsilon 1 subunit 761656 9 5 9 1 2 3 2 0 2 0 0.59 1.00 -9918 PGLYRP3 peptidoglycan recognition protein 3 236096 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9919 TUBA1C tubulin, alpha 1c 305816 2 2 2 1 1 1 0 0 0 0 0.59 1.00 -9920 SLC25A21 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 210560 1 1 1 1 0 0 1 0 0 0 0.59 1.00 -9921 INTS4 integrator complex subunit 4 661840 4 4 4 0 1 3 0 0 0 0 0.59 1.00 -9922 NOL10 nucleolar protein 10 425840 2 2 2 0 0 1 1 0 0 0 0.59 1.00 -9923 RBM8A RNA binding motif protein 8A 122976 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -9924 HUNK hormonally upregulated Neu-associated kinase 449596 4 3 4 2 2 1 0 0 1 0 0.59 1.00 -9925 POLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa 90048 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9926 FAM46B family with sequence similarity 46, member B 229096 3 3 3 0 1 2 0 0 0 0 0.59 1.00 -9927 CCDC53 coiled-coil domain containing 53 136680 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -9928 LCP2 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) 352960 3 3 3 3 2 0 1 0 0 0 0.59 1.00 -9929 CACNG4 calcium channel, voltage-dependent, gamma subunit 4 205968 2 2 2 1 1 1 0 0 0 0 0.59 1.00 -9930 PPRC1 peroxisome proliferator-activated receptor gamma, coactivator-related 1 1094324 6 6 6 3 3 1 1 0 1 0 0.59 1.00 -9931 DMRTB1 DMRT-like family B with proline-rich C-terminal, 1 144732 1 1 1 3 1 0 0 0 0 0 0.59 1.00 -9932 SLC18A1 solute carrier family 18 (vesicular monoamine), member 1 359296 4 3 4 3 1 2 1 0 0 0 0.59 1.00 -9933 PLA2G2F phospholipase A2, group IIF 139056 1 1 1 2 0 0 1 0 0 0 0.59 1.00 -9934 TM9SF2 transmembrane 9 superfamily member 2 456568 3 3 2 1 2 0 1 0 0 0 0.59 1.00 -9935 PCDHA7 protocadherin alpha 7 595896 5 5 5 0 3 1 1 0 0 0 0.59 1.00 -9936 ZNF93 zinc finger protein 93 420896 3 3 3 1 0 3 0 0 0 0 0.59 1.00 -9937 MED22 mediator complex subunit 22 140896 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -9938 ICAM1 intercellular adhesion molecule 1 (CD54), human rhinovirus receptor 358148 2 2 2 0 0 0 1 0 1 0 0.59 1.00 -9939 PAPD5 PAP associated domain containing 5 325696 2 2 2 0 0 0 2 0 0 0 0.60 1.00 -9940 HNRNPH3 241248 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -9941 SDCBP2 syndecan binding protein (syntenin) 2 180308 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -9942 COPS6 COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) 216560 2 2 2 2 1 0 1 0 0 0 0.60 1.00 -9943 FAIM3 Fas apoptotic inhibitory molecule 3 222656 2 2 2 1 0 2 0 0 0 0 0.60 1.00 -9944 TCF20 transcription factor 20 (AR1) 1326304 9 8 9 5 1 5 1 0 2 0 0.60 1.00 -9945 DZIP1L DAZ interacting protein 1-like 527352 4 4 4 2 1 1 2 0 0 0 0.60 1.00 -9946 CLVS2 223720 2 2 2 0 1 1 0 0 0 0 0.60 1.00 -9947 PHLPP2 905856 5 5 5 2 0 3 1 0 1 0 0.60 1.00 -9948 NUDT1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 116248 1 1 1 2 1 0 0 0 0 0 0.60 1.00 -9949 TXNDC5 thioredoxin domain containing 5 250160 2 2 2 3 2 0 0 0 0 0 0.60 1.00 -9950 OR8S1 olfactory receptor, family 8, subfamily S, member 1 242172 2 2 1 2 0 2 0 0 0 0 0.60 1.00 -9951 PLSCR5 phospholipid scramblase family, member 5 176816 1 1 1 1 0 1 0 0 0 0 0.60 1.00 -9952 ASL argininosuccinate lyase 324296 2 2 2 0 1 0 1 0 0 0 0.60 1.00 -9953 GCLM glutamate-cysteine ligase, modifier subunit 161952 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -9954 SLC22A4 solute carrier family 22 (organic cation/ergothioneine transporter), member 4 334128 2 2 2 1 1 1 0 0 0 0 0.60 1.00 -9955 GALNT6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 427616 3 3 3 3 1 1 1 0 0 0 0.60 1.00 -9956 NACA2 nascent polypeptide-associated complex alpha subunit 2 146048 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -9957 ZNF136 zinc finger protein 136 366968 2 2 2 0 0 0 1 0 1 0 0.60 1.00 -9958 C5orf25 chromosome 5 open reading frame 25 281968 3 2 3 0 1 1 1 0 0 0 0.60 1.00 -9959 STXBP5L syntaxin binding protein 5-like 821856 9 6 9 1 2 4 3 0 0 0 0.60 1.00 -9960 GPR111 G protein-coupled receptor 111 438368 2 2 2 0 0 1 1 0 0 0 0.60 1.00 -9961 AKR7L 109312 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -9962 CIITA class II, major histocompatibility complex, transactivator 770168 7 7 7 2 3 4 0 0 0 0 0.60 1.00 -9963 HMGB2 high-mobility group box 2 144704 1 1 1 1 0 0 1 0 0 0 0.60 1.00 -9964 BSX brain-specific homeobox 133216 2 2 2 1 2 0 0 0 0 0 0.60 1.00 -9965 TUBA3D tubulin, alpha 3d 307552 3 3 2 0 3 0 0 0 0 0 0.60 1.00 -9966 PPP1R13B protein phosphatase 1, regulatory (inhibitor) subunit 13B 739844 6 5 6 1 1 2 1 0 2 0 0.60 1.00 -9967 LRRC37A3 leucine rich repeat containing 37, member A3 744072 4 4 4 2 1 1 1 0 1 0 0.60 1.00 -9968 MCCC2 methylcrotonoyl-Coenzyme A carboxylase 2 (beta) 364448 2 2 2 0 1 1 0 0 0 0 0.60 1.00 -9969 WDR63 WD repeat domain 63 619136 5 5 5 2 0 2 3 0 0 0 0.60 1.00 -9970 ATN1 atrophin 1 712800 4 4 4 1 2 1 0 0 1 0 0.60 1.00 -9971 CDKN2AIP CDKN2A interacting protein 367584 2 2 2 0 0 1 0 0 1 0 0.60 1.00 -9972 DDX21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 540288 4 3 4 0 1 2 1 0 0 0 0.60 1.00 -9973 ZNF442 zinc finger protein 442 425600 6 3 6 0 3 3 0 0 0 0 0.60 1.00 -9974 TMX4 205568 1 1 1 1 0 0 1 0 0 0 0.60 1.00 -9975 UBAC1 UBA domain containing 1 269024 3 3 3 3 1 2 0 0 0 0 0.60 1.00 -9976 CPEB1 cytoplasmic polyadenylation element binding protein 1 356160 5 3 5 1 0 4 0 1 0 0 0.60 1.00 -9977 ZNF701 zinc finger protein 701 315728 2 2 2 0 0 1 0 0 1 0 0.60 1.00 -9978 MAP3K7 mitogen-activated protein kinase kinase kinase 7 423136 4 3 4 1 1 1 1 0 1 0 0.60 1.00 -9979 SH3TC1 SH3 domain and tetratricopeptide repeats 1 734756 5 5 5 1 2 1 1 0 1 0 0.60 1.00 -9980 CYC1 cytochrome c-1 194544 1 1 1 2 0 1 0 0 0 0 0.60 1.00 -9981 FCAMR Fc receptor, IgA, IgM, high affinity 187264 1 1 1 1 0 0 0 0 1 0 0.60 1.00 -9982 ARHGEF16 Rho guanine exchange factor (GEF) 16 228416 1 1 1 0 0 0 0 0 1 0 0.60 1.00 -9983 SPPL3 261304 2 2 2 0 2 0 0 0 0 0 0.60 1.00 -9984 NPBWR1 neuropeptides B/W receptor 1 181916 3 3 3 0 3 0 0 0 0 0 0.60 1.00 -9985 PRG3 proteoglycan 3 141484 1 1 1 2 0 1 0 0 0 0 0.60 1.00 -9986 FAM92A1 family with sequence similarity 92, member A1 181864 1 1 1 1 0 1 0 0 0 0 0.60 1.00 -9987 GTPBP1 GTP binding protein 1 413224 2 2 2 1 2 0 0 0 0 0 0.60 1.00 -9988 NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 523328 4 4 4 0 1 1 1 0 1 0 0.60 1.00 -9989 PPM1E protein phosphatase 1E (PP2C domain containing) 455568 6 4 6 2 2 3 1 0 0 0 0.60 1.00 -9990 ALDH1L2 aldehyde dehydrogenase 1 family, member L2 629888 5 3 5 2 2 1 1 0 1 0 0.60 1.00 -9991 RING1 ring finger protein 1 211004 2 2 2 0 1 1 0 0 0 0 0.60 1.00 -9992 MVP major vault protein 587904 4 4 4 0 0 1 3 0 0 0 0.60 1.00 -9993 CCNE2 cyclin E2 282016 2 2 2 1 0 2 0 0 0 0 0.60 1.00 -9994 KIAA1009 KIAA1009 912248 8 5 8 2 2 3 2 0 1 0 0.60 1.00 -9995 DGAT2L6 diacylglycerol O-acyltransferase 2-like 6 217768 1 1 1 2 0 0 1 0 0 0 0.60 1.00 -9996 ZER1 zer-1 homolog (C. elegans) 521384 4 4 4 1 2 1 1 0 0 0 0.60 1.00 -9997 GPBP1 GC-rich promoter binding protein 1 327488 2 2 2 1 2 0 0 0 0 0 0.60 1.00 -9998 IKZF1 IKAROS family zinc finger 1 (Ikaros) 333036 3 3 3 2 0 2 1 0 0 0 0.60 1.00 -9999 PRDM15 PR domain containing 15 918624 6 6 6 3 2 1 2 0 1 0 0.60 1.00 -10000 SCRN2 secernin 2 287476 2 2 2 0 0 1 1 0 0 0 0.60 1.00 -10001 OS9 458800 3 3 3 1 0 0 2 0 1 0 0.60 1.00 -10002 ELP2 elongation protein 2 homolog (S. cerevisiae) 575456 4 4 4 4 2 0 2 0 0 0 0.60 1.00 -10003 USP40 ubiquitin specific peptidase 40 791968 9 5 8 0 2 2 4 0 1 0 0.60 1.00 -10004 FGF19 fibroblast growth factor 19 86576 1 1 1 1 0 1 0 0 0 0 0.60 1.00 -10005 CNNM3 cyclin M3 277648 2 2 2 0 2 0 0 0 0 0 0.60 1.00 -10006 AIM2 absent in melanoma 2 235648 1 1 1 0 0 0 0 0 1 0 0.60 1.00 -10007 HIST1H2BL histone cluster 1, H2bl 86240 1 1 1 1 0 1 0 0 0 0 0.60 1.00 -10008 TTC22 tetratricopeptide repeat domain 22 165628 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -10009 EFCAB6 EF-hand calcium binding domain 6 1036056 12 5 11 5 2 6 0 0 1 3 0.60 1.00 -10010 RBM17 RNA binding motif protein 17 280000 2 2 2 0 2 0 0 0 0 0 0.60 1.00 -10011 MYST2 MYST histone acetyltransferase 2 424704 4 4 4 1 3 0 1 0 0 0 0.60 1.00 -10012 GAK cyclin G associated kinase 826992 6 6 6 2 1 1 2 0 2 0 0.60 1.00 -10013 WNT7B wingless-type MMTV integration site family, member 7B 177212 2 2 2 1 2 0 0 0 0 0 0.60 1.00 -10014 SSRP1 structure specific recognition protein 1 491456 3 3 3 1 1 2 0 0 0 0 0.60 1.00 -10015 DPEP2 dipeptidase 2 320720 2 2 2 0 0 1 1 0 0 0 0.60 1.00 -10016 SULT4A1 sulfotransferase family 4A, member 1 147960 1 1 1 2 1 0 0 0 0 0 0.60 1.00 -10017 FAH fumarylacetoacetate hydrolase (fumarylacetoacetase) 294784 2 2 2 3 0 1 1 0 0 0 0.60 1.00 -10018 ELOVL6 ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) 182336 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -10019 CARKD 241864 2 2 2 0 0 1 1 0 0 0 0.60 1.00 -10020 ESR2 estrogen receptor 2 (ER beta) 382844 3 3 3 2 2 0 1 0 0 0 0.60 1.00 -10021 ARHGAP6 Rho GTPase activating protein 6 547208 3 3 3 3 1 0 1 0 1 0 0.60 1.00 -10022 ZSCAN1 zinc finger and SCAN domain containing 1 241276 4 3 4 1 3 1 0 0 0 0 0.60 1.00 -10023 KDM4D 353024 2 2 2 0 1 1 0 0 0 0 0.60 1.00 -10024 PTPRO protein tyrosine phosphatase, receptor type, O 841120 6 5 6 5 3 1 2 0 0 0 0.60 1.00 -10025 C4orf21 chromosome 4 open reading frame 21 1295928 6 6 6 0 1 2 2 0 1 0 0.60 1.00 -10026 EZH2 enhancer of zeste homolog 2 (Drosophila) 522368 4 4 4 3 2 0 2 0 0 0 0.60 1.00 -10027 OXA1L oxidase (cytochrome c) assembly 1-like 342272 4 3 4 1 1 2 0 1 0 0 0.60 1.00 -10028 TFRC transferrin receptor (p90, CD71) 527520 3 3 3 0 2 0 0 0 1 0 0.60 1.00 -10029 AK2 adenylate kinase 2 168672 1 1 1 1 0 0 0 0 1 0 0.60 1.00 -10030 LRRC36 leucine rich repeat containing 36 512080 2 2 2 3 0 2 0 0 0 0 0.60 1.00 -10031 SORBS3 sorbin and SH3 domain containing 3 420716 3 3 3 0 0 1 1 1 0 0 0.60 1.00 -10032 RBM19 RNA binding motif protein 19 667296 8 6 8 3 4 2 2 0 0 0 0.60 1.00 -10033 UST uronyl-2-sulfotransferase 247648 1 1 1 3 0 0 1 0 0 0 0.60 1.00 -10034 CALR3 calreticulin 3 266784 2 2 2 2 0 1 1 0 0 0 0.60 1.00 -10035 FAM60A family with sequence similarity 60, member A 153664 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -10036 GDAP1 ganglioside-induced differentiation-associated protein 1 246624 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -10037 TBC1D10B TBC1 domain family, member 10B 251656 2 2 2 0 1 1 0 0 0 0 0.60 1.00 -10038 SUPV3L1 suppressor of var1, 3-like 1 (S. cerevisiae) 542304 3 3 3 0 0 2 1 0 0 0 0.60 1.00 -10039 TLX1 T-cell leukemia homeobox 1 109456 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -10040 ZNF2 zinc finger protein 2 290276 4 3 4 0 2 1 1 0 0 0 0.60 1.00 -10041 ATXN2 ataxin 2 740768 5 5 5 3 2 3 0 0 0 0 0.60 1.00 -10042 EDARADD EDAR-associated death domain 150528 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -10043 ST5 suppression of tumorigenicity 5 733552 9 7 9 5 4 4 1 0 0 0 0.60 1.00 -10044 C12orf51 chromosome 12 open reading frame 51 2657304 17 15 17 7 7 5 3 0 2 0 0.60 1.00 -10045 C19orf39 chromosome 19 open reading frame 39 149044 1 1 1 1 0 1 0 0 0 0 0.60 1.00 -10046 TOMM22 translocase of outer mitochondrial membrane 22 homolog (yeast) 91216 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -10047 UFSP2 UFM1-specific peptidase 2 326592 2 2 2 1 0 0 1 0 1 0 0.60 1.00 -10048 ZNF683 zinc finger protein 683 343704 1 1 1 0 0 0 0 0 1 0 0.60 1.00 -10049 POLR3C polymerase (RNA) III (DNA directed) polypeptide C (62kD) 372064 2 2 2 0 1 1 0 0 0 0 0.60 1.00 -10050 TPD52 tumor protein D52 177044 1 1 1 1 0 1 0 0 0 0 0.60 1.00 -10051 PSMA1 proteasome (prosome, macropain) subunit, alpha type, 1 194208 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -10052 C12orf71 182960 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -10053 CYTH3 260104 2 2 2 2 0 2 0 0 0 0 0.60 1.00 -10054 DBP D site of albumin promoter (albumin D-box) binding protein 114744 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -10055 KDELR2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 178836 1 1 1 1 0 0 0 0 1 0 0.60 1.00 -10056 DST dystonin 4581368 40 18 40 9 10 11 11 0 5 3 0.60 1.00 -10057 RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 308784 2 2 2 1 1 0 1 0 0 0 0.60 1.00 -10058 EDN1 endothelin 1 147616 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -10059 MAPT microtubule-associated protein tau 479488 5 5 5 4 2 3 0 0 0 0 0.60 1.00 -10060 CDK15 269472 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -10061 ADSS adenylosuccinate synthase 310268 2 2 2 1 1 0 0 0 1 0 0.60 1.00 -10062 ARID5B AT rich interactive domain 5B (MRF1-like) 807968 6 5 6 1 1 1 2 0 0 2 0.60 1.00 -10063 ATE1 arginyltransferase 1 372092 3 3 3 0 1 1 1 0 0 0 0.60 1.00 -10064 CDK13 800380 5 5 5 1 0 3 1 0 1 0 0.60 1.00 -10065 PRDM1 PR domain containing 1, with ZNF domain 539896 4 4 4 2 3 0 0 0 1 0 0.60 1.00 -10066 TUBB3 tubulin, beta 3 290612 2 2 2 1 0 2 0 0 0 0 0.60 1.00 -10067 OVGP1 oviductal glycoprotein 1, 120kDa (mucin 9, oviductin) 466144 3 3 3 3 0 2 1 0 0 0 0.60 1.00 -10068 MDM2 Mdm2 p53 binding protein homolog (mouse) 344512 4 2 4 0 0 1 3 0 0 0 0.60 1.00 -10069 ATP5SL ATP5S-like 178752 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -10070 ASB14 ankyrin repeat and SOCS box-containing 14 205044 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -10071 PCGF2 polycomb group ring finger 2 204904 2 2 2 0 2 0 0 0 0 0 0.60 1.00 -10072 ZFP30 zinc finger protein 30 homolog (mouse) 353024 3 3 3 0 2 1 0 0 0 0 0.60 1.00 -10073 C14orf143 chromosome 14 open reading frame 143 115584 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -10074 HESX1 HESX homeobox 1 128576 2 1 2 0 1 0 1 0 0 0 0.60 1.00 -10075 PKDREJ polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin) 1350860 15 8 14 6 5 5 3 0 2 0 0.60 1.00 -10076 ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A 151424 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -10077 FAM123A family with sequence similarity 123A 358232 4 4 4 2 2 2 0 0 0 0 0.60 1.00 -10078 LOH12CR1 loss of heterozygosity, 12, chromosomal region 1 135884 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -10079 CAV2 caveolin 2 118076 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -10080 PRKAR1B protein kinase, cAMP-dependent, regulatory, type I, beta 153784 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -10081 RMI1 RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) 421568 6 3 6 1 0 3 3 0 0 0 0.61 1.00 -10082 DUSP13 dual specificity phosphatase 13 284076 2 2 2 2 0 2 0 0 0 0 0.61 1.00 -10083 ZSWIM2 zinc finger, SWIM-type containing 2 434112 3 2 3 3 0 2 0 0 1 0 0.61 1.00 -10084 ZFP64 zinc finger protein 64 homolog (mouse) 729540 5 5 5 7 1 3 0 0 1 0 0.61 1.00 -10085 CHST13 carbohydrate (chondroitin 4) sulfotransferase 13 112448 2 2 2 0 0 2 0 0 0 0 0.61 1.00 -10086 FTSJ3 FtsJ homolog 3 (E. coli) 587776 4 4 4 2 1 2 1 0 0 0 0.61 1.00 -10087 ILKAP integrin-linked kinase-associated serine/threonine phosphatase 2C 261548 4 2 4 1 2 1 1 0 0 0 0.61 1.00 -10088 MOSPD2 motile sperm domain containing 2 362208 2 2 2 1 0 1 1 0 0 0 0.61 1.00 -10089 RHAG Rh-associated glycoprotein 284480 2 2 2 0 0 2 0 0 0 0 0.61 1.00 -10090 TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 288960 2 2 2 0 0 0 2 0 0 0 0.61 1.00 -10091 DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 422912 1 1 1 1 0 0 0 0 1 0 0.61 1.00 -10092 GGT1 gamma-glutamyltransferase 1 358400 3 3 1 1 0 3 0 0 0 0 0.61 1.00 -10093 LGALS9B 110812 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -10094 CCT8 chaperonin containing TCP1, subunit 8 (theta) 382368 1 1 1 3 0 0 0 0 1 0 0.61 1.00 -10095 HSD17B8 hydroxysteroid (17-beta) dehydrogenase 8 117824 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -10096 HIPK4 homeodomain interacting protein kinase 4 403520 3 3 2 1 3 0 0 0 0 0 0.61 1.00 -10097 AQP2 aquaporin 2 (collecting duct) 160104 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10098 NUP88 nucleoporin 88kDa 513688 4 4 3 0 2 1 1 0 0 0 0.61 1.00 -10099 RPL11 ribosomal protein L11 125392 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -10100 KIAA2026 KIAA2026 1378412 13 8 13 3 3 7 2 0 1 0 0.61 1.00 -10101 PDP1 375200 3 3 3 1 1 0 2 0 0 0 0.61 1.00 -10102 PILRA paired immunoglobin-like type 2 receptor alpha 210560 3 2 3 0 3 0 0 0 0 0 0.61 1.00 -10103 TBC1D7 TBC1 domain family, member 7 203840 2 2 2 2 2 0 0 0 0 0 0.61 1.00 -10104 KIAA1109 KIAA1109 3437448 30 16 29 3 8 10 10 0 2 0 0.61 1.00 -10105 CTPS CTP synthase 413056 4 3 4 1 1 3 0 0 0 0 0.61 1.00 -10106 SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 408268 4 4 4 3 3 0 0 1 0 0 0.61 1.00 -10107 CLDN25 155456 1 1 1 0 0 0 0 1 0 0 0.61 1.00 -10108 CTRC chymotrypsin C (caldecrin) 187936 1 1 1 1 1 0 0 0 0 0 0.61 1.00 -10109 TPM1 tropomyosin 1 (alpha) 252764 2 2 2 0 2 0 0 0 0 0 0.61 1.00 -10110 ITPR2 inositol 1,4,5-triphosphate receptor, type 2 1866816 19 8 19 1 5 5 3 0 4 2 0.61 1.00 -10111 HAT1 histone acetyltransferase 1 292096 2 2 2 1 0 1 1 0 0 0 0.61 1.00 -10112 SH3YL1 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) 170688 1 1 1 1 1 0 0 0 0 0 0.61 1.00 -10113 RBM12 RNA binding motif protein 12 627704 3 3 3 0 0 1 1 0 1 0 0.61 1.00 -10114 SIAH1 seven in absentia homolog 1 (Drosophila) 212800 1 1 1 1 1 0 0 0 0 0 0.61 1.00 -10115 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 552892 4 4 3 2 2 0 1 0 1 0 0.61 1.00 -10116 HOMER2 homer homolog 2 (Drosophila) 240936 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -10117 PMEPA1 prostate transmembrane protein, androgen induced 1 181684 1 1 1 1 0 0 0 0 1 0 0.61 1.00 -10118 HELQ 756672 6 5 6 4 2 1 2 0 1 0 0.61 1.00 -10119 MECP2 methyl CpG binding protein 2 (Rett syndrome) 329952 2 2 2 1 1 0 1 0 0 0 0.61 1.00 -10120 SCNN1A sodium channel, nonvoltage-gated 1 alpha 448672 3 3 3 1 0 1 2 0 0 0 0.61 1.00 -10121 LONRF3 LON peptidase N-terminal domain and ring finger 3 378168 2 2 2 2 0 0 2 0 0 0 0.61 1.00 -10122 RND2 Rho family GTPase 2 134568 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10123 ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4 429608 4 4 4 1 0 3 1 0 0 0 0.61 1.00 -10124 AGAP11 336156 4 2 4 1 1 2 0 0 1 0 0.61 1.00 -10125 HMP19 119168 1 1 1 1 1 0 0 0 0 0 0.61 1.00 -10126 EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa 328608 1 1 1 0 0 0 0 0 1 0 0.61 1.00 -10127 DAB2IP DAB2 interacting protein 696092 6 5 6 2 4 2 0 0 0 0 0.61 1.00 -10128 IFI44L interferon-induced protein 44-like 287616 1 1 1 2 1 0 0 0 0 0 0.61 1.00 -10129 SLC22A13 solute carrier family 22, member 13 379768 3 3 3 1 0 2 1 0 0 0 0.61 1.00 -10130 C9orf96 chromosome 9 open reading frame 96 451736 3 3 3 1 2 1 0 0 0 0 0.61 1.00 -10131 B9D2 B9 protein domain 2 119700 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10132 POU4F1 POU class 4 homeobox 1 144200 2 2 2 2 2 0 0 0 0 0 0.61 1.00 -10133 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 247856 2 2 2 1 1 0 1 0 0 0 0.61 1.00 -10134 ZMYND15 zinc finger, MYND-type containing 15 426000 3 3 3 0 2 1 0 0 0 0 0.61 1.00 -10135 CD36 CD36 molecule (thrombospondin receptor) 328608 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -10136 SPDYE3 176516 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10137 ZFAT zinc finger and AT hook domain containing 822096 6 6 6 3 1 2 3 0 0 0 0.61 1.00 -10138 ENDOD1 endonuclease domain containing 1 281568 2 2 2 1 1 0 1 0 0 0 0.61 1.00 -10139 PRDM4 PR domain containing 4 548800 3 3 3 0 0 1 1 1 0 0 0.61 1.00 -10140 AADACL3 arylacetamide deacetylase-like 3 240352 2 2 2 1 0 0 2 0 0 0 0.61 1.00 -10141 PQLC3 PQ loop repeat containing 3 109760 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -10142 MYF6 myogenic factor 6 (herculin) 163968 2 2 2 3 2 0 0 0 0 0 0.61 1.00 -10143 MATR3 matrin 3 582400 5 4 5 1 0 3 2 0 0 0 0.61 1.00 -10144 DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 841120 6 5 6 3 2 1 1 0 2 0 0.61 1.00 -10145 RBM15 RNA binding motif protein 15 629944 6 6 6 1 2 2 1 0 1 0 0.61 1.00 -10146 NUP93 nucleoporin 93kDa 569856 4 4 4 1 3 1 0 0 0 0 0.61 1.00 -10147 ARRDC4 arrestin domain containing 4 219072 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10148 C12orf52 chromosome 12 open reading frame 52 181216 2 2 2 0 1 1 0 0 0 0 0.61 1.00 -10149 SAMD8 sterile alpha motif domain containing 8 223328 1 1 1 1 1 0 0 0 0 0 0.61 1.00 -10150 TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) 506912 3 3 3 1 0 3 0 0 0 0 0.61 1.00 -10151 MUSK muscle, skeletal, receptor tyrosine kinase 600352 4 4 4 3 1 2 0 0 1 0 0.61 1.00 -10152 RXFP1 relaxin/insulin-like family peptide receptor 1 525504 3 3 3 2 0 2 1 0 0 0 0.61 1.00 -10153 MRPS30 mitochondrial ribosomal protein S30 276556 2 2 2 0 0 1 1 0 0 0 0.61 1.00 -10154 OTUD5 OTU domain containing 5 273224 2 2 2 1 2 0 0 0 0 0 0.61 1.00 -10155 TMED4 transmembrane emp24 protein transport domain containing 4 137408 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -10156 GPC2 glypican 2 308136 3 3 3 0 2 0 1 0 0 0 0.61 1.00 -10157 SLCO2A1 solute carrier organic anion transporter family, member 2A1 431872 3 3 3 2 0 2 0 0 1 0 0.61 1.00 -10158 TSPAN13 tetraspanin 13 143136 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -10159 YEATS2 YEATS domain containing 2 973888 6 6 6 2 0 3 2 0 1 0 0.61 1.00 -10160 AMPD2 adenosine monophosphate deaminase 2 (isoform L) 600904 5 5 5 1 3 2 0 0 0 0 0.61 1.00 -10161 B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 223636 1 1 1 2 0 0 1 0 0 0 0.61 1.00 -10162 HHLA2 HERV-H LTR-associating 2 286048 2 2 2 1 1 1 0 0 0 0 0.61 1.00 -10163 NPR3 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) 332748 3 2 3 2 1 1 0 0 1 0 0.61 1.00 -10164 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 418656 2 2 2 0 0 0 2 0 0 0 0.61 1.00 -10165 GPER G protein-coupled estrogen receptor 1 251300 2 2 2 1 2 0 0 0 0 0 0.61 1.00 -10166 HAX1 HCLS1 associated protein X-1 194432 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -10167 C17orf55 chromosome 17 open reading frame 55 147728 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10168 MPP3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) 400264 3 3 3 1 2 1 0 0 0 0 0.61 1.00 -10169 EAF1 ELL associated factor 1 171592 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10170 PEG10 paternally expressed 10 206176 1 1 1 1 1 0 0 0 0 0 0.61 1.00 -10171 CD101 694848 9 5 7 4 2 4 2 0 1 0 0.61 1.00 -10172 P2RX3 purinergic receptor P2X, ligand-gated ion channel, 3 268960 2 2 2 2 1 1 0 0 0 0 0.61 1.00 -10173 RNF121 ring finger protein 121 218960 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10174 HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 1647912 12 9 12 7 4 5 2 0 1 0 0.61 1.00 -10175 ALG14 asparagine-linked glycosylation 14 homolog (S. cerevisiae) 149408 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -10176 KIAA0556 KIAA0556 1110440 11 7 10 4 5 4 1 0 1 0 0.61 1.00 -10177 AGXT2L2 alanine-glyoxylate aminotransferase 2-like 2 299712 1 1 1 0 0 0 0 0 1 0 0.61 1.00 -10178 FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a) 200032 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -10179 KIF5A kinesin family member 5A 719264 10 6 10 1 6 4 0 0 0 0 0.61 1.00 -10180 MAP3K8 mitogen-activated protein kinase kinase kinase 8 320768 2 2 2 3 0 2 0 0 0 0 0.61 1.00 -10181 CLRN1 clarin 1 171360 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -10182 PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 330040 3 3 3 0 2 1 0 0 0 0 0.61 1.00 -10183 CLDN9 claudin 9 124628 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -10184 RAP1GDS1 RAP1, GTP-GDP dissociation stimulator 1 422688 3 3 3 1 0 2 1 0 0 0 0.61 1.00 -10185 PAPOLB poly(A) polymerase beta (testis specific) 425012 5 4 5 1 3 0 2 0 0 0 0.61 1.00 -10186 TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) 317608 1 1 1 3 0 1 0 0 0 0 0.61 1.00 -10187 CCDC132 coiled-coil domain containing 132 682976 4 3 4 1 0 3 1 0 0 0 0.61 1.00 -10188 GK glycerol kinase 395136 3 3 3 1 2 1 0 0 0 0 0.61 1.00 -10189 BATF basic leucine zipper transcription factor, ATF-like 87360 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10190 HMOX2 heme oxygenase (decycling) 2 217504 3 2 3 1 0 3 0 0 0 0 0.61 1.00 -10191 NEK1 NIMA (never in mitosis gene a)-related kinase 1 831416 9 5 8 3 4 3 1 1 0 0 0.61 1.00 -10192 SMS spermine synthase 244608 2 2 2 0 1 1 0 0 0 0 0.61 1.00 -10193 PMVK phosphomevalonate kinase 134176 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -10194 FAM187B 247072 1 1 1 1 0 0 0 0 1 0 0.61 1.00 -10195 ARHGAP11B Rho GTPase activating protein 11B 185472 1 1 1 2 1 0 0 0 0 0 0.61 1.00 -10196 CEP120 681184 7 5 7 1 0 4 2 0 1 0 0.61 1.00 -10197 CAMK4 calcium/calmodulin-dependent protein kinase IV 327712 3 3 3 3 1 1 1 0 0 0 0.61 1.00 -10198 GPRC5B G protein-coupled receptor, family C, group 5, member B 272664 2 2 2 3 0 1 1 0 0 0 0.61 1.00 -10199 KIAA0427 KIAA0427 394156 3 3 3 0 0 3 0 0 0 0 0.61 1.00 -10200 UBASH3A ubiquitin associated and SH3 domain containing, A 439048 3 3 3 5 1 1 0 0 1 0 0.61 1.00 -10201 PROP1 PROP paired-like homeobox 1 155232 1 1 1 1 1 0 0 0 0 0 0.61 1.00 -10202 CCDC144B coiled-coil domain containing 144B 236488 2 2 2 1 0 1 1 0 0 0 0.61 1.00 -10203 HMGB4 high-mobility group box 4 123620 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -10204 CRHR1 corticotropin releasing hormone receptor 1 282912 2 2 2 2 1 0 1 0 0 0 0.61 1.00 -10205 FAM59A family with sequence similarity 59, member A 583548 6 4 6 2 1 2 2 0 1 0 0.61 1.00 -10206 TPD52L2 tumor protein D52-like 2 157336 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10207 SLC25A25 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 401268 2 2 2 1 0 1 0 0 1 0 0.61 1.00 -10208 SHISA3 shisa homolog 3 (Xenopus laevis) 127412 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -10209 SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporters), member 1 734344 11 5 10 3 3 6 2 0 0 0 0.61 1.00 -10210 TOM1L1 target of myb1 (chicken)-like 1 333984 1 1 1 0 0 0 0 0 1 0 0.61 1.00 -10211 NARF nuclear prelamin A recognition factor 314356 2 2 2 3 1 0 1 0 0 0 0.61 1.00 -10212 UBA7 ubiquitin-like modifier activating enzyme 7 678896 4 4 4 0 1 2 1 0 0 0 0.61 1.00 -10213 ILDR2 330664 2 2 2 0 0 2 0 0 0 0 0.61 1.00 -10214 TOP2B topoisomerase (DNA) II beta 180kDa 1035848 9 6 8 1 3 4 2 0 0 0 0.61 1.00 -10215 LILRA2 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 320096 2 2 2 1 0 1 0 0 1 0 0.62 1.00 -10216 DHRS3 dehydrogenase/reductase (SDR family) member 3 203700 2 2 2 2 2 0 0 0 0 0 0.62 1.00 -10217 GMEB2 glucocorticoid modulatory element binding protein 2 347280 3 3 3 2 2 0 1 0 0 0 0.62 1.00 -10218 MLST8 221284 2 2 2 1 0 1 0 0 1 0 0.62 1.00 -10219 HIST2H2AB histone cluster 2, H2ab 88928 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -10220 SLC25A20 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 210872 2 2 2 1 1 1 0 0 0 0 0.62 1.00 -10221 PTCD3 Pentatricopeptide repeat domain 3 485184 4 3 4 0 1 2 1 0 0 0 0.62 1.00 -10222 CCDC64B coiled-coil domain containing 64B 169676 1 1 1 0 0 0 0 1 0 0 0.62 1.00 -10223 ARHGEF18 rho/rac guanine nucleotide exchange factor (GEF) 18 538048 5 5 5 1 2 3 0 0 0 0 0.62 1.00 -10224 MS4A4A membrane-spanning 4-domains, subfamily A, member 4 167552 2 1 2 0 0 2 0 0 0 0 0.62 1.00 -10225 ITIH3 inter-alpha (globulin) inhibitor H3 609352 4 4 4 4 1 1 1 1 0 0 0.62 1.00 -10226 ZNF518B zinc finger protein 518B 723296 3 3 3 4 0 1 2 0 0 0 0.62 1.00 -10227 ZFP1 zinc finger protein 1 homolog (mouse) 276864 4 2 4 0 0 4 0 0 0 0 0.62 1.00 -10228 ATG10 ATG10 autophagy related 10 homolog (S. cerevisiae) 153888 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10229 LHX1 LIM homeobox 1 192820 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -10230 HMGB1 high-mobility group box 1 148296 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -10231 RASGEF1C RasGEF domain family, member 1C 289604 2 2 2 0 1 1 0 0 0 0 0.62 1.00 -10232 MOCS3 molybdenum cofactor synthesis 3 275660 2 2 2 0 1 1 0 0 0 0 0.62 1.00 -10233 FNBP4 formin binding protein 4 649412 5 4 5 1 0 5 0 0 0 0 0.62 1.00 -10234 JMJD1C jumonji domain containing 1C 1713404 9 8 9 0 0 5 4 0 0 0 0.62 1.00 -10235 TMEM17 transmembrane protein 17 137312 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -10236 GATA6 GATA binding protein 6 193396 2 2 2 0 1 1 0 0 0 0 0.62 1.00 -10237 MBD1 methyl-CpG binding domain protein 1 462364 5 4 5 0 3 0 1 0 1 0 0.62 1.00 -10238 LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 96672 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -10239 OAS1 2',5'-oligoadenylate synthetase 1, 40/46kDa 308448 2 2 2 1 1 0 1 0 0 0 0.62 1.00 -10240 MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) 146888 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10241 LACE1 lactation elevated 1 323540 4 3 4 1 2 2 0 0 0 0 0.62 1.00 -10242 PRKACA protein kinase, cAMP-dependent, catalytic, alpha 240128 1 1 1 2 0 0 0 0 1 0 0.62 1.00 -10243 CHMP4B chromatin modifying protein 4B 144160 1 1 1 2 1 0 0 0 0 0 0.62 1.00 -10244 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae) 446432 2 2 2 0 0 1 0 0 1 0 0.62 1.00 -10245 CATSPER3 cation channel, sperm associated 3 275296 2 2 2 0 0 1 1 0 0 0 0.62 1.00 -10246 ZNF433 zinc finger protein 433 456512 2 2 2 2 1 0 1 0 0 0 0.62 1.00 -10247 CCND3 cyclin D3 172068 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10248 KIAA1797 KIAA1797 1249472 7 7 7 2 1 3 3 0 0 0 0.62 1.00 -10249 CYB5R3 cytochrome b5 reductase 3 190476 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10250 HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 516768 3 3 3 0 1 1 1 0 0 0 0.62 1.00 -10251 PVRL3 poliovirus receptor-related 3 343912 2 2 2 0 0 1 0 0 1 0 0.62 1.00 -10252 TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) 545832 4 4 4 1 2 0 2 0 0 0 0.62 1.00 -10253 C6orf105 chromosome 6 open reading frame 105 160608 1 1 1 1 0 0 1 0 0 0 0.62 1.00 -10254 IFNAR2 interferon (alpha, beta and omega) receptor 2 369544 2 2 2 1 1 1 0 0 0 0 0.62 1.00 -10255 CBX2 chromobox homolog 2 (Pc class homolog, Drosophila) 340556 2 2 2 1 0 1 0 0 1 0 0.62 1.00 -10256 C21orf62 chromosome 21 open reading frame 62 148512 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10257 GJA4 gap junction protein, alpha 4, 37kDa 225092 2 2 2 2 1 1 0 0 0 0 0.62 1.00 -10258 C1R complement component 1, r subcomponent 411560 3 3 3 1 1 1 0 0 1 0 0.62 1.00 -10259 GRWD1 glutamate-rich WD repeat containing 1 294112 2 2 2 1 0 0 2 0 0 0 0.62 1.00 -10260 C2orf67 chromosome 2 open reading frame 67 676480 3 3 3 1 0 1 1 0 1 0 0.62 1.00 -10261 TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b 197568 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -10262 SHPK sedoheptulokinase 320236 2 2 2 0 0 1 0 0 1 0 0.62 1.00 -10263 RPL18A ribosomal protein L18a 118412 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10264 NODAL nodal homolog (mouse) 184100 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -10265 DDX23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 566048 4 4 4 1 1 2 1 0 0 0 0.62 1.00 -10266 TNS3 tensin 3 989968 8 6 8 0 4 1 0 0 1 2 0.62 1.00 -10267 OXTR oxytocin receptor 208376 3 3 3 1 2 0 1 0 0 0 0.62 1.00 -10268 ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) 417816 2 2 2 1 1 0 0 0 1 0 0.62 1.00 -10269 BICD2 bicaudal D homolog 2 (Drosophila) 505108 6 5 5 1 6 0 0 0 0 0 0.62 1.00 -10270 TFDP3 transcription factor Dp family, member 3 235200 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10271 RAB40AL RAB40A, member RAS oncogene family-like 188384 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -10272 FCF1 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) 140896 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10273 ELOVL1 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 194432 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -10274 ABHD12 abhydrolase domain containing 12 249984 2 2 2 1 1 1 0 0 0 0 0.62 1.00 -10275 ZNF641 zinc finger protein 641 302624 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -10276 CABP2 calcium binding protein 2 109328 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10277 ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 873824 10 5 10 3 4 1 3 0 0 2 0.62 1.00 -10278 FAM134C family with sequence similarity 134, member C 301476 2 2 2 1 0 1 1 0 0 0 0.62 1.00 -10279 KAZ 466456 4 4 4 3 0 3 0 0 1 0 0.62 1.00 -10280 SPHK1 sphingosine kinase 1 246600 1 1 1 1 0 0 0 0 1 0 0.62 1.00 -10281 RP1L1 retinitis pigmentosa 1-like 1 1412152 12 10 12 3 5 5 2 0 0 0 0.62 1.00 -10282 DHX37 DEAH (Asp-Glu-Ala-His) box polypeptide 37 769176 5 5 5 5 2 2 1 0 0 0 0.62 1.00 -10283 C16orf48 chromosome 16 open reading frame 48 196516 2 2 2 0 0 2 0 0 0 0 0.62 1.00 -10284 PYROXD2 400752 2 2 2 2 1 1 0 0 0 0 0.62 1.00 -10285 ENSA endosulfine alpha 139328 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10286 FUCA1 fucosidase, alpha-L- 1, tissue 271320 3 2 3 0 1 0 1 0 1 0 0.62 1.00 -10287 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 291464 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -10288 ABCD1 ATP-binding cassette, sub-family D (ALD), member 1 347236 3 3 3 0 1 1 1 0 0 0 0.62 1.00 -10289 EP400 E1A binding protein p400 1996180 20 15 20 6 10 8 1 0 1 0 0.62 1.00 -10290 ORAI1 ORAI calcium release-activated calcium modulator 1 166264 2 2 2 0 2 0 0 0 0 0 0.62 1.00 -10291 ZNF836 632352 9 5 9 1 0 8 1 0 0 0 0.62 1.00 -10292 WIPI1 WD repeat domain, phosphoinositide interacting 1 296120 2 2 2 2 1 0 1 0 0 0 0.62 1.00 -10293 SYDE1 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) 288516 3 3 3 3 3 0 0 0 0 0 0.62 1.00 -10294 TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa 587244 4 4 4 1 2 1 0 0 1 0 0.62 1.00 -10295 FHL2 four and a half LIM domains 2 192640 2 2 2 0 1 1 0 0 0 0 0.62 1.00 -10296 UBTF upstream binding transcription factor, RNA polymerase I 531372 6 5 6 3 0 4 2 0 0 0 0.62 1.00 -10297 RAB20 RAB20, member RAS oncogene family 155596 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -10298 KRTAP10-7 keratin associated protein 10-7 240556 2 2 2 1 1 0 1 0 0 0 0.62 1.00 -10299 KLHL14 kelch-like 14 (Drosophila) 410032 3 3 3 1 2 0 0 0 1 0 0.62 1.00 -10300 FRG2 FSHD region gene 2 150668 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10301 SLC47A1 solute carrier family 47, member 1 368508 4 3 4 0 0 1 2 0 1 0 0.62 1.00 -10302 GPR26 G protein-coupled receptor 26 132496 2 2 2 0 2 0 0 0 0 0 0.62 1.00 -10303 SAP30 Sin3A-associated protein, 30kDa 106680 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10304 PIK3C2A phosphoinositide-3-kinase, class 2, alpha polypeptide 1162336 5 5 5 2 0 3 2 0 0 0 0.62 1.00 -10305 C12orf53 chromosome 12 open reading frame 53 173628 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10306 BBS7 Bardet-Biedl syndrome 7 499296 6 3 6 2 0 4 1 0 1 0 0.62 1.00 -10307 DCAF8 408120 4 3 4 0 1 3 0 0 0 0 0.62 1.00 -10308 SLC22A3 solute carrier family 22 (extraneuronal monoamine transporter), member 3 306348 3 3 3 1 1 2 0 0 0 0 0.62 1.00 -10309 TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa 506576 3 3 3 1 0 1 1 0 1 0 0.62 1.00 -10310 KLF1 Kruppel-like factor 1 (erythroid) 130032 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10311 C18orf10 chromosome 18 open reading frame 10 208544 1 1 1 1 0 0 1 0 0 0 0.62 1.00 -10312 BIN2 bridging integrator 2 379484 3 3 3 1 1 1 1 0 0 0 0.62 1.00 -10313 PROL1 proline rich, lacrimal 1 169120 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10314 CXXC5 CXXC finger 5 147112 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -10315 MICALL1 MICAL-like 1 433692 3 3 3 0 1 2 0 0 0 0 0.62 1.00 -10316 BCR breakpoint cluster region 643580 7 6 7 2 4 1 2 0 0 0 0.62 1.00 -10317 TYRP1 tyrosinase-related protein 1 367808 2 2 2 2 1 1 0 0 0 0 0.62 1.00 -10318 HCK hemopoietic cell kinase 340128 2 2 2 1 1 0 0 0 1 0 0.62 1.00 -10319 CUEDC2 CUE domain containing 2 200704 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -10320 C1orf69 chromosome 1 open reading frame 69 103320 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10321 OSGEP O-sialoglycoprotein endopeptidase 235648 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -10322 DUSP26 dual specificity phosphatase 26 (putative) 145152 1 1 1 3 1 0 0 0 0 0 0.62 1.00 -10323 SEC14L2 SEC14-like 2 (S. cerevisiae) 270984 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -10324 CUL9 1727936 12 10 12 6 5 3 1 0 3 0 0.62 1.00 -10325 CCDC101 coiled-coil domain containing 101 205632 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -10326 GLI1 glioma-associated oncogene homolog 1 (zinc finger protein) 743176 4 4 4 4 1 1 0 0 2 0 0.62 1.00 -10327 BCL2L1 BCL2-like 1 156436 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -10328 PAWR PRKC, apoptosis, WT1, regulator 134204 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10329 ELOVL5 ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) 207872 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -10330 COL5A3 collagen, type V, alpha 3 1146696 10 6 10 2 4 4 1 0 1 0 0.62 1.00 -10331 YARS tyrosyl-tRNA synthetase 367136 2 2 2 1 2 0 0 0 0 0 0.62 1.00 -10332 IRF6 interferon regulatory factor 6 320768 2 2 2 2 0 1 1 0 0 0 0.62 1.00 -10333 GCLC glutamate-cysteine ligase, catalytic subunit 443072 4 3 4 0 0 1 3 0 0 0 0.62 1.00 -10334 CUTC cutC copper transporter homolog (E. coli) 177632 1 1 1 1 0 0 1 0 0 0 0.62 1.00 -10335 MARCH6 membrane-associated ring finger (C3HC4) 6 630336 6 5 6 1 3 1 2 0 0 0 0.62 1.00 -10336 DDOST dolichyl-diphosphooligosaccharide-protein glycosyltransferase 276944 2 2 2 4 2 0 0 0 0 0 0.62 1.00 -10337 EHD1 EH-domain containing 1 334780 3 3 3 0 1 1 0 0 1 0 0.62 1.00 -10338 MAP3K11 mitogen-activated protein kinase kinase kinase 11 429716 4 4 4 0 2 1 0 0 1 0 0.62 1.00 -10339 MKKS McKusick-Kaufman syndrome 387296 2 2 2 0 0 1 1 0 0 0 0.63 1.00 -10340 KLF6 Kruppel-like factor 6 194432 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -10341 LAMC2 laminin, gamma 2 817796 10 6 10 1 7 2 1 0 0 0 0.63 1.00 -10342 NDST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 605836 4 4 4 2 2 0 2 0 0 0 0.63 1.00 -10343 ZNF674 zinc finger protein 674 394688 2 2 2 2 0 0 2 0 0 0 0.63 1.00 -10344 C14orf43 chromosome 14 open reading frame 43 703896 4 4 4 2 1 2 0 0 1 0 0.63 1.00 -10345 ANKK1 ankyrin repeat and kinase domain containing 1 392208 3 3 3 0 2 0 1 0 0 0 0.63 1.00 -10346 MRPS5 mitochondrial ribosomal protein S5 286496 3 2 3 1 2 0 1 0 0 0 0.63 1.00 -10347 HTR2A 5-hydroxytryptamine (serotonin) receptor 2A 319872 3 3 3 3 0 3 0 0 0 0 0.63 1.00 -10348 MPO myeloperoxidase 501732 5 5 5 2 3 1 0 0 1 0 0.63 1.00 -10349 WDR4 WD repeat domain 4 246356 2 2 2 3 2 0 0 0 0 0 0.63 1.00 -10350 CAPS2 calcyphosine 2 229152 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10351 KRT32 keratin 32 297332 2 2 2 1 0 2 0 0 0 0 0.63 1.00 -10352 SAR1A SAR1 gene homolog A (S. cerevisiae) 139104 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -10353 HELT 198044 2 2 2 1 1 0 1 0 0 0 0.63 1.00 -10354 HSF5 heat shock transcription factor family member 5 355068 3 3 3 0 0 2 1 0 0 0 0.63 1.00 -10355 ANKRD24 ankyrin repeat domain 24 530596 5 5 5 0 2 3 0 0 0 0 0.63 1.00 -10356 C16orf71 chromosome 16 open reading frame 71 333172 3 3 3 1 1 2 0 0 0 0 0.63 1.00 -10357 OR6C2 olfactory receptor, family 6, subfamily C, member 2 211232 2 1 2 2 0 1 1 0 0 0 0.63 1.00 -10358 DOK4 docking protein 4 226912 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -10359 RSBN1 round spermatid basic protein 1 522140 4 4 4 0 1 2 1 0 0 0 0.63 1.00 -10360 DSCC1 defective in sister chromatid cohesion 1 homolog (S. cerevisiae) 237188 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10361 GRN granulin 406392 2 2 2 3 0 1 0 0 1 0 0.63 1.00 -10362 ALG10 asparagine-linked glycosylation 10 homolog (yeast, alpha-1,2-glucosyltransferase) 321216 3 2 3 0 0 1 2 0 0 0 0.63 1.00 -10363 TMEM161B transmembrane protein 161B 338688 2 2 2 1 0 1 1 0 0 0 0.63 1.00 -10364 RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 730464 8 5 8 0 0 4 4 0 0 0 0.63 1.00 -10365 SLC9A8 solute carrier family 9 (sodium/hydrogen exchanger), member 8 401360 3 3 3 4 0 3 0 0 0 0 0.63 1.00 -10366 TIPIN TIMELESS interacting protein 209216 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -10367 PEX14 peroxisomal biogenesis factor 14 261064 2 2 2 1 1 0 1 0 0 0 0.63 1.00 -10368 CLUL1 clusterin-like 1 (retinal) 320992 2 2 2 3 0 1 1 0 0 0 0.63 1.00 -10369 ZNF516 zinc finger protein 516 595504 6 5 6 1 2 2 0 0 2 0 0.63 1.00 -10370 ZZZ3 zinc finger, ZZ-type containing 3 617344 5 4 5 2 3 0 2 0 0 0 0.63 1.00 -10371 FAM155B family with sequence similarity 155, member B 242340 1 1 1 1 0 0 0 0 1 0 0.63 1.00 -10372 PSME4 proteasome (prosome, macropain) activator subunit 4 1205120 9 5 9 2 5 2 2 0 0 0 0.63 1.00 -10373 AKTIP AKT interacting protein 204960 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -10374 SLC22A20 solute carrier family 22, member 20 160104 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -10375 CHRD chordin 565628 5 4 5 0 1 3 0 0 1 0 0.63 1.00 -10376 CRAT carnitine acetyltransferase 414696 3 3 3 0 2 1 0 0 0 0 0.63 1.00 -10377 TPPP tubulin polymerization promoting protein 127904 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10378 B3GALT2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 285152 3 2 3 0 1 2 0 0 0 0 0.63 1.00 -10379 EDN3 endothelin 3 165172 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -10380 IFI30 interferon, gamma-inducible protein 30 139536 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -10381 COPS7B COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis) 177880 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -10382 LILRB3 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 309880 2 2 2 3 0 2 0 0 0 0 0.63 1.00 -10383 OR1I1 olfactory receptor, family 1, subfamily I, member 1 239448 2 2 2 5 1 1 0 0 0 0 0.63 1.00 -10384 FAM111A family with sequence similarity 111, member A 413056 2 2 2 3 1 1 0 0 0 0 0.63 1.00 -10385 SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 255112 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -10386 ETNK1 ethanolamine kinase 1 297500 2 2 2 0 0 1 1 0 0 0 0.63 1.00 -10387 NGLY1 N-glycanase 1 439304 3 3 3 1 2 0 0 0 1 0 0.63 1.00 -10388 ANXA2 annexin A2 246036 2 2 2 0 2 0 0 0 0 0 0.63 1.00 -10389 ARL6IP6 ADP-ribosylation-like factor 6 interacting protein 6 148148 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -10390 NHLH1 nescient helix loop helix 1 78596 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -10391 FAM13A 717024 8 5 8 3 3 3 1 0 1 0 0.63 1.00 -10392 RAB3B RAB3B, member RAS oncogene family 151424 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -10393 SLC5A3 solute carrier family 5 (inositol transporters), member 3 484064 2 2 2 0 0 1 1 0 0 0 0.63 1.00 -10394 TUBB4 tubulin, beta 4 294980 3 3 3 2 2 1 0 0 0 0 0.63 1.00 -10395 CHIC2 cysteine-rich hydrophobic domain 2 116928 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -10396 DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 542080 5 5 5 0 3 2 0 0 0 0 0.63 1.00 -10397 SEPT12 septin 12 247408 2 2 2 3 2 0 0 0 0 0 0.63 1.00 -10398 UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 364000 2 2 2 1 0 1 0 0 1 0 0.63 1.00 -10399 ZNF527 zinc finger protein 527 412580 2 2 2 1 0 1 1 0 0 0 0.63 1.00 -10400 RALGAPB 1030624 6 6 6 0 1 2 2 0 1 0 0.63 1.00 -10401 MARS methionyl-tRNA synthetase 624288 6 5 6 1 1 4 0 0 1 0 0.63 1.00 -10402 RGS22 regulator of G-protein signaling 22 870328 9 4 9 2 2 4 1 0 0 2 0.63 1.00 -10403 HAUS8 286048 2 2 2 1 1 1 0 0 0 0 0.63 1.00 -10404 C2orf43 chromosome 2 open reading frame 43 224448 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -10405 PRKACG protein kinase, cAMP-dependent, catalytic, gamma 237440 3 3 3 2 3 0 0 0 0 0 0.63 1.00 -10406 FAR1 356608 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -10407 SYTL4 synaptotagmin-like 4 (granuphilin-a) 465920 2 2 2 2 1 0 1 0 0 0 0.63 1.00 -10408 HYI hydroxypyruvate isomerase homolog (E. coli) 145864 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10409 SLC39A8 solute carrier family 39 (zinc transporter), member 8 267008 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -10410 MARCH11 membrane-associated ring finger (C3HC4) 11 153216 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -10411 SLC5A11 solute carrier family 5 (sodium/glucose cotransporter), member 11 467712 3 3 3 3 0 3 0 0 0 0 0.63 1.00 -10412 DMRT3 doublesex and mab-3 related transcription factor 3 252196 2 2 2 2 2 0 0 0 0 0 0.63 1.00 -10413 ANKRD2 ankyrin repeat domain 2 (stretch responsive muscle) 167384 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10414 DPPA4 developmental pluripotency associated 4 211232 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -10415 C1orf25 chromosome 1 open reading frame 25 492520 3 3 3 0 1 2 0 0 0 0 0.63 1.00 -10416 HAL histidine ammonia-lyase 460096 4 4 4 4 1 2 1 0 0 0 0.63 1.00 -10417 SLC4A1AP solute carrier family 4 (anion exchanger), member 1, adaptor protein 548128 7 4 7 0 2 2 2 0 1 0 0.63 1.00 -10418 FNDC7 fibronectin type III domain containing 7 346080 1 1 1 1 0 0 0 0 1 0 0.63 1.00 -10419 SREBF2 sterol regulatory element binding transcription factor 2 704592 3 3 3 3 0 0 1 0 2 0 0.63 1.00 -10420 FBXW12 F-box and WD repeat domain containing 12 321440 2 2 2 1 0 1 1 0 0 0 0.63 1.00 -10421 SLBP stem-loop binding protein 148064 1 1 1 1 1 0 0 0 0 0 0.63 1.00 -10422 HSPD1 heat shock 60kDa protein 1 (chaperonin) 388696 2 2 2 1 0 0 1 0 1 0 0.63 1.00 -10423 C12orf69 152768 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -10424 CHPF2 428120 3 3 3 0 2 0 0 0 1 0 0.63 1.00 -10425 TTC26 tetratricopeptide repeat domain 26 389088 2 2 2 1 0 1 0 0 1 0 0.63 1.00 -10426 MYL2 myosin, light chain 2, regulatory, cardiac, slow 118496 1 1 1 1 1 0 0 0 0 0 0.63 1.00 -10427 IMP5 460964 3 3 3 3 2 1 0 0 0 0 0.63 1.00 -10428 TMC3 transmembrane channel-like 3 738260 5 5 5 2 1 1 3 0 0 0 0.63 1.00 -10429 ARHGAP31 975744 8 6 8 3 3 4 0 0 1 0 0.63 1.00 -10430 ST7 suppression of tumorigenicity 7 430528 2 2 2 1 0 2 0 0 0 0 0.63 1.00 -10431 TRAM1L1 translocation associated membrane protein 1-like 1 248108 2 2 2 2 0 2 0 0 0 0 0.63 1.00 -10432 APOL1 apolipoprotein L, 1 279720 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10433 STAMBP STAM binding protein 293664 2 2 2 0 1 1 0 0 0 0 0.63 1.00 -10434 ESYT2 527744 3 3 3 1 1 1 1 0 0 0 0.63 1.00 -10435 TRIM54 tripartite motif-containing 54 248332 3 2 3 0 1 2 0 0 0 0 0.63 1.00 -10436 AOC3 amine oxidase, copper containing 3 (vascular adhesion protein 1) 496496 4 4 4 4 1 2 1 0 0 0 0.63 1.00 -10437 MRPS28 mitochondrial ribosomal protein S28 129024 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10438 MSL3 367840 3 2 3 0 0 2 1 0 0 0 0.63 1.00 -10439 RBMX RNA binding motif protein, X-linked 270592 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -10440 GPR153 G protein-coupled receptor 153 232564 2 2 2 0 0 2 0 0 0 0 0.63 1.00 -10441 VSIG1 V-set and immunoglobulin domain containing 1 267008 2 2 2 2 1 0 0 0 1 0 0.63 1.00 -10442 PISD phosphatidylserine decarboxylase 252784 2 2 2 2 2 0 0 0 0 0 0.63 1.00 -10443 MAP3K6 mitogen-activated protein kinase kinase kinase 6 772380 6 6 6 0 2 3 1 0 0 0 0.63 1.00 -10444 NAV1 neuron navigator 1 1213772 8 7 8 2 0 3 4 0 1 0 0.63 1.00 -10445 OR4C16 olfactory receptor, family 4, subfamily C, member 16 209888 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10446 RAB8A RAB8A, member RAS oncogene family 146944 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -10447 FBXL14 F-box and leucine-rich repeat protein 14 267176 2 2 2 0 0 1 1 0 0 0 0.63 1.00 -10448 DLGAP2 discs, large (Drosophila) homolog-associated protein 2 529784 5 5 5 9 5 0 0 0 0 0 0.63 1.00 -10449 PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) 608384 5 5 5 1 3 1 0 1 0 0 0.63 1.00 -10450 PDE5A phosphodiesterase 5A, cGMP-specific 614208 6 3 6 2 2 1 1 0 2 0 0.63 1.00 -10451 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 387968 3 3 3 0 1 2 0 0 0 0 0.63 1.00 -10452 SLTM SAFB-like, transcription modulator 709884 8 6 8 1 5 2 1 0 0 0 0.63 1.00 -10453 ADD3 adducin 3 (gamma) 487648 2 2 2 1 2 0 0 0 0 0 0.63 1.00 -10454 LAPTM4A lysosomal-associated protein transmembrane 4 alpha 163520 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10455 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 215264 1 1 1 2 0 0 1 0 0 0 0.63 1.00 -10456 HNRNPA1L2 151088 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10457 LMAN1 lectin, mannose-binding, 1 355040 2 2 2 1 0 1 1 0 0 0 0.63 1.00 -10458 AMN1 antagonist of mitotic exit network 1 homolog (S. cerevisiae) 150840 1 1 1 1 0 0 1 0 0 0 0.63 1.00 -10459 ZNF441 zinc finger protein 441 423808 3 2 3 0 0 1 1 0 1 0 0.63 1.00 -10460 SEPT4 septin 4 351680 5 3 5 0 4 1 0 0 0 0 0.63 1.00 -10461 ATP6V0B ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 129696 1 1 1 2 0 1 0 0 0 0 0.63 1.00 -10462 FAM158A 144928 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -10463 PCDHGC3 protocadherin gamma subfamily C, 3 633640 6 5 6 1 2 2 1 1 0 0 0.63 1.00 -10464 RBL1 retinoblastoma-like 1 (p107) 739172 5 4 5 1 2 2 0 0 1 0 0.63 1.00 -10465 SLC37A2 solute carrier family 37 (glycerol-3-phosphate transporter), member 2 356160 3 3 3 2 2 0 1 0 0 0 0.63 1.00 -10466 NFU1 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) 172984 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -10467 C17orf60 chromosome 17 open reading frame 60 170380 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -10468 MEA1 male-enhanced antigen 1 128576 1 1 1 2 1 0 0 0 0 0 0.63 1.00 -10469 DHRS9 dehydrogenase/reductase (SDR family) member 9 218624 1 1 1 1 0 0 1 0 0 0 0.64 1.00 -10470 CAPG capping protein (actin filament), gelsolin-like 242592 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10471 SLC35B1 solute carrier family 35, member B1 225120 1 1 1 1 0 0 1 0 0 0 0.64 1.00 -10472 SLCO3A1 solute carrier organic anion transporter family, member 3A1 432040 3 3 3 4 1 1 1 0 0 0 0.64 1.00 -10473 TFCP2L1 transcription factor CP2-like 1 324576 2 2 2 3 1 1 0 0 0 0 0.64 1.00 -10474 BAI2 brain-specific angiogenesis inhibitor 2 887956 6 6 6 1 4 0 1 0 1 0 0.64 1.00 -10475 GCC2 GRIP and coiled-coil domain containing 2 1132332 7 5 7 3 0 2 3 0 2 0 0.64 1.00 -10476 MICALCL MICAL C-terminal like 455280 4 4 4 1 1 2 1 0 0 0 0.64 1.00 -10477 DSG2 desmoglein 2 754432 5 5 5 0 3 1 1 0 0 0 0.64 1.00 -10478 LRTM2 leucine-rich repeats and transmembrane domains 2 197456 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10479 FOXH1 forkhead box H1 148168 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -10480 RBM15B RNA binding motif protein 15B 444220 3 3 3 2 1 0 1 0 1 0 0.64 1.00 -10481 SERINC3 serine incorporator 3 327488 2 2 2 0 0 2 0 0 0 0 0.64 1.00 -10482 ESRP1 471608 2 2 2 2 0 1 0 0 1 0 0.64 1.00 -10483 KCNN3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 477536 4 4 4 2 3 0 1 0 0 0 0.64 1.00 -10484 TBC1D21 TBC1 domain family, member 21 236320 1 1 1 0 0 0 0 0 1 0 0.64 1.00 -10485 UNK unkempt homolog (Drosophila) 522936 4 4 4 1 1 1 1 0 1 0 0.64 1.00 -10486 PAMR1 494368 4 4 4 1 0 3 1 0 0 0 0.64 1.00 -10487 ZNF438 zinc finger protein 438 555324 4 4 4 0 2 1 1 0 0 0 0.64 1.00 -10488 SNHG3-RCC1 SNHG3-RCC1 291648 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -10489 MFN1 mitofusin 1 513856 4 2 4 3 0 1 1 0 0 2 0.64 1.00 -10490 DOK1 docking protein 1, 62kDa (downstream of tyrosine kinase 1) 304192 2 2 2 0 0 1 0 0 1 0 0.64 1.00 -10491 TWISTNB TWIST neighbor 227528 2 2 2 1 1 1 0 0 0 0 0.64 1.00 -10492 PEMT phosphatidylethanolamine N-methyltransferase 151980 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -10493 SLC6A12 solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 412768 3 3 3 3 1 2 0 0 0 0 0.64 1.00 -10494 RBM5 RNA binding motif protein 5 569856 3 3 3 1 1 1 0 0 1 0 0.64 1.00 -10495 ANXA3 annexin A3 228480 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10496 WNT8A wingless-type MMTV integration site family, member 8A 241920 2 2 2 2 0 2 0 0 0 0 0.64 1.00 -10497 MORC2 MORC family CW-type zinc finger 2 673120 5 5 3 0 2 0 3 0 0 0 0.64 1.00 -10498 C19orf46 chromosome 19 open reading frame 46 265424 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -10499 FOXD4L1 forkhead box D4-like 1 252476 3 3 3 1 2 1 0 0 0 0 0.64 1.00 -10500 PREB prolactin regulatory element binding 276060 2 2 2 0 1 1 0 0 0 0 0.64 1.00 -10501 OR5J2 olfactory receptor, family 5, subfamily J, member 2 211232 1 1 1 2 0 1 0 0 0 0 0.64 1.00 -10502 WBP1 WW domain binding protein 1 173332 1 1 1 1 0 0 1 0 0 0 0.64 1.00 -10503 TMEM106C transmembrane protein 106C 174944 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10504 GGT5 gamma-glutamyltransferase 5 361572 2 2 2 2 1 0 0 0 1 0 0.64 1.00 -10505 SP140L 384576 3 2 3 2 1 0 2 0 0 0 0.64 1.00 -10506 MYCBPAP MYCBP associated protein 653128 4 4 4 4 1 2 1 0 0 0 0.64 1.00 -10507 CKAP2L cytoskeleton associated protein 2-like 509376 3 3 3 1 1 1 0 0 1 0 0.64 1.00 -10508 OR8G2 olfactory receptor, family 8, subfamily G, member 2 205856 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -10509 FOXR2 forkhead box R2 210560 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -10510 CCDC116 coiled-coil domain containing 116 359184 3 3 3 0 2 1 0 0 0 0 0.64 1.00 -10511 SIGMAR1 128656 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10512 CD83 CD83 molecule 138488 1 1 1 2 0 0 1 0 0 0 0.64 1.00 -10513 ITGB7 integrin, beta 7 505988 4 4 4 2 1 2 1 0 0 0 0.64 1.00 -10514 MRM1 mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) 220024 2 2 2 0 0 2 0 0 0 0 0.64 1.00 -10515 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 986636 6 5 6 2 0 3 2 0 1 0 0.64 1.00 -10516 USP51 ubiquitin specific peptidase 51 444304 3 3 3 2 0 2 0 1 0 0 0.64 1.00 -10517 SLC22A18 solute carrier family 22, member 18 214480 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10518 C1QB complement component 1, q subcomponent, B chain 172480 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10519 TAF1D 191968 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10520 KRT79 keratin 79 364476 3 3 3 1 2 1 0 0 0 0 0.64 1.00 -10521 ABTB1 ankyrin repeat and BTB (POZ) domain containing 1 318152 2 2 2 0 1 0 1 0 0 0 0.64 1.00 -10522 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 579180 6 5 6 4 4 0 2 0 0 0 0.64 1.00 -10523 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 274624 2 2 2 0 0 0 2 0 0 0 0.64 1.00 -10524 EFNA3 ephrin-A3 128296 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10525 PLRG1 pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) 359520 5 3 5 0 3 0 2 0 0 0 0.64 1.00 -10526 C3orf31 chromosome 3 open reading frame 31 219296 1 1 1 2 1 0 0 0 0 0 0.64 1.00 -10527 C2orf7 chromosome 2 open reading frame 7 122444 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10528 COL17A1 collagen, type XVII, alpha 1 1015412 8 7 7 1 4 3 0 0 1 0 0.64 1.00 -10529 HSF4 heat shock transcription factor 4 255472 1 1 1 0 0 0 0 0 1 0 0.64 1.00 -10530 MAN1A2 mannosidase, alpha, class 1A, member 2 443072 2 2 2 3 0 0 2 0 0 0 0.64 1.00 -10531 HARBI1 harbinger transposase derived 1 236992 1 1 1 0 0 0 0 0 1 0 0.64 1.00 -10532 IMPDH1 IMP (inosine monophosphate) dehydrogenase 1 335756 2 2 2 0 1 1 0 0 0 0 0.64 1.00 -10533 CINP 147616 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10534 ARRDC5 arrestin domain containing 5 232512 1 1 1 1 0 0 0 0 1 0 0.64 1.00 -10535 SEC23A Sec23 homolog A (S. cerevisiae) 531776 2 2 2 2 0 0 1 0 1 0 0.64 1.00 -10536 SNX32 sorting nexin 32 275932 3 3 3 1 1 1 1 0 0 0 0.64 1.00 -10537 APOBEC2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 152908 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10538 C17orf101 243344 2 2 2 0 2 0 0 0 0 0 0.64 1.00 -10539 RPA1 replication protein A1, 70kDa 421472 2 2 2 0 0 1 1 0 0 0 0.64 1.00 -10540 CLDN18 claudin 18 226368 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10541 TMEM123 transmembrane protein 123 134792 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10542 OTUB1 OTU domain, ubiquitin aldehyde binding 1 164928 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10543 HTR2B 5-hydroxytryptamine (serotonin) receptor 2B 326592 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10544 SH2D7 290596 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10545 MYOC myocilin, trabecular meshwork inducible glucocorticoid response 342048 2 2 2 2 0 1 1 0 0 0 0.64 1.00 -10546 C3orf70 170464 2 1 2 0 0 1 0 0 1 0 0.64 1.00 -10547 CDR2 cerebellar degeneration-related protein 2, 62kDa 305872 2 2 2 1 0 0 2 0 0 0 0.64 1.00 -10548 SRCIN1 501204 5 5 5 1 5 0 0 0 0 0 0.64 1.00 -10549 CPLX3 complexin 3 109536 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -10550 PRRG1 proline rich Gla (G-carboxyglutamic acid) 1 149856 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10551 UROC1 urocanase domain containing 1 483616 3 3 3 1 3 0 0 0 0 0 0.64 1.00 -10552 CENPM centromere protein M 111608 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10553 HBEGF heparin-binding EGF-like growth factor 143160 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -10554 APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A 131824 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10555 EGLN2 egl nine homolog 2 (C. elegans) 239680 2 2 2 0 1 1 0 0 0 0 0.64 1.00 -10556 MFHAS1 malignant fibrous histiocytoma amplified sequence 1 587176 6 5 6 1 3 1 2 0 0 0 0.64 1.00 -10557 TBX21 T-box 21 273516 2 2 2 2 1 1 0 0 0 0 0.64 1.00 -10558 TRAF4 TNF receptor-associated factor 4 308168 2 2 2 0 2 0 0 0 0 0 0.64 1.00 -10559 KCNMB1 potassium large conductance calcium-activated channel, subfamily M, beta member 1 131712 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10560 GPCPD1 469280 3 3 3 1 1 2 0 0 0 0 0.64 1.00 -10561 DHX9 DEAH (Asp-Glu-Ala-His) box polypeptide 9 878304 6 5 6 1 2 1 1 0 2 0 0.64 1.00 -10562 WDR25 WD repeat domain 25 371028 2 2 2 3 1 1 0 0 0 0 0.64 1.00 -10563 MCM6 minichromosome maintenance complex component 6 558292 4 4 4 1 2 2 0 0 0 0 0.64 1.00 -10564 LMO4 LIM domain only 4 110012 1 1 1 1 1 0 0 0 0 0 0.64 1.00 -10565 OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 719072 5 5 5 3 2 2 1 0 0 0 0.64 1.00 -10566 CSRNP2 368396 2 2 2 1 1 1 0 0 0 0 0.64 1.00 -10567 TK1 thymidine kinase 1, soluble 157780 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10568 FRMD4A FERM domain containing 4A 628768 7 5 7 3 4 1 1 0 1 0 0.64 1.00 -10569 RBM38 RNA binding motif protein 38 105700 1 1 1 2 0 1 0 0 0 0 0.64 1.00 -10570 PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 467076 4 4 4 0 3 0 1 0 0 0 0.64 1.00 -10571 LMO2 LIM domain only 2 (rhombotin-like 1) 98700 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -10572 XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble 438144 4 3 4 0 2 2 0 0 0 0 0.64 1.00 -10573 BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide 300016 3 3 3 0 2 1 0 0 0 0 0.64 1.00 -10574 IGFBP1 insulin-like growth factor binding protein 1 129136 2 1 2 0 1 0 1 0 0 0 0.64 1.00 -10575 CYP2C18 cytochrome P450, family 2, subfamily C, polypeptide 18 338016 2 2 2 1 0 0 2 0 0 0 0.64 1.00 -10576 CD4 CD4 molecule 316104 2 2 2 2 0 2 0 0 0 0 0.64 1.00 -10577 ACAP1 496584 3 3 3 3 1 1 0 0 1 0 0.64 1.00 -10578 DENND1B DENN/MADD domain containing 1B 502880 3 3 3 1 1 1 0 0 1 0 0.64 1.00 -10579 ZRANB3 zinc finger, RAN-binding domain containing 3 717024 4 4 4 1 0 3 0 0 1 0 0.64 1.00 -10580 ZBTB46 zinc finger and BTB domain containing 46 357196 5 5 5 3 5 0 0 0 0 0 0.64 1.00 -10581 MED7 mediator complex subunit 7 158144 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10582 MAPK13 mitogen-activated protein kinase 13 246372 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -10583 C1orf51 chromosome 1 open reading frame 51 263872 2 1 2 0 0 0 1 0 1 0 0.64 1.00 -10584 P2RX1 purinergic receptor P2X, ligand-gated ion channel, 1 265184 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10585 RLN1 relaxin 1 126784 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10586 CYP4F3 cytochrome P450, family 4, subfamily F, polypeptide 3 360864 3 3 3 1 3 0 0 0 0 0 0.64 1.00 -10587 GALT galactose-1-phosphate uridylyltransferase 264712 2 2 2 0 1 1 0 0 0 0 0.64 1.00 -10588 LMAN2 lectin, mannose-binding 2 247072 2 2 2 1 0 2 0 0 0 0 0.64 1.00 -10589 ESRP2 459396 3 3 3 1 0 1 1 0 1 0 0.64 1.00 -10590 SPAG4 sperm associated antigen 4 283528 2 2 2 1 0 0 1 0 1 0 0.64 1.00 -10591 EFR3A EFR3 homolog A (S. cerevisiae) 555032 3 3 3 3 1 1 0 0 1 0 0.64 1.00 -10592 DNMBP dynamin binding protein 1065416 8 7 8 7 4 1 2 0 1 0 0.64 1.00 -10593 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2 432588 3 3 3 1 2 1 0 0 0 0 0.64 1.00 -10594 SCAMP3 secretory carrier membrane protein 3 241920 1 1 1 2 0 1 0 0 0 0 0.64 1.00 -10595 WDFY1 WD repeat and FYVE domain containing 1 275100 2 2 2 1 1 1 0 0 0 0 0.64 1.00 -10596 COL4A3BP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 430164 3 3 3 2 2 1 0 0 0 0 0.64 1.00 -10597 TRPM8 transient receptor potential cation channel, subfamily M, member 8 764064 10 6 10 4 7 2 0 1 0 0 0.64 1.00 -10598 IL12RB1 interleukin 12 receptor, beta 1 454920 2 2 2 1 0 1 0 0 1 0 0.64 1.00 -10599 PNLIPRP2 pancreatic lipase-related protein 2 262376 2 2 2 1 1 1 0 0 0 0 0.64 1.00 -10600 RAB36 RAB36, member RAS oncogene family 198660 2 2 2 1 1 1 0 0 0 0 0.64 1.00 -10601 PPP2R5A protein phosphatase 2, regulatory subunit B', alpha isoform 323680 2 2 2 2 1 0 1 0 0 0 0.64 1.00 -10602 HAPLN2 hyaluronan and proteoglycan link protein 2 167944 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10603 PPP2CA protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform 214592 1 1 1 1 0 0 1 0 0 0 0.64 1.00 -10604 SLAMF6 SLAM family member 6 230944 3 1 3 1 0 2 0 0 1 0 0.64 1.00 -10605 UBOX5 U-box domain containing 5 367808 5 2 5 3 0 4 1 0 0 0 0.64 1.00 -10606 OR10G2 olfactory receptor, family 10, subfamily G, member 2 201184 1 1 1 1 0 0 0 0 1 0 0.64 1.00 -10607 C15orf58 259112 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -10608 GPR155 G protein-coupled receptor 155 598752 3 2 3 1 0 1 1 0 1 0 0.65 1.00 -10609 CAPNS2 calpain, small subunit 2 168224 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10610 VTA1 Vps20-associated 1 homolog (S. cerevisiae) 214144 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -10611 AGBL1 ATP/GTP binding protein-like 1 730424 6 5 6 2 0 5 1 0 0 0 0.65 1.00 -10612 PATL1 protein associated with topoisomerase II homolog 1 (yeast) 416396 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -10613 WNT2 wingless-type MMTV integration site family member 2 247072 1 1 1 1 1 0 0 0 0 0 0.65 1.00 -10614 MAP3K2 mitogen-activated protein kinase kinase kinase 2 423224 3 2 3 0 0 1 1 0 1 0 0.65 1.00 -10615 CFB complement factor B 385392 4 3 4 1 0 4 0 0 0 0 0.65 1.00 -10616 HOXA2 homeobox A2 222376 2 2 2 4 0 2 0 0 0 0 0.65 1.00 -10617 NDUFAF1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 224000 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -10618 ERO1L ERO1-like (S. cerevisiae) 308088 2 2 2 1 0 2 0 0 0 0 0.65 1.00 -10619 BRD1 bromodomain containing 1 685692 7 7 7 0 5 0 1 0 1 0 0.65 1.00 -10620 KIF7 kinesin family member 7 535120 5 4 5 0 3 1 0 0 1 0 0.65 1.00 -10621 MAN1B1 mannosidase, alpha, class 1B, member 1 412736 2 2 2 1 0 0 1 0 1 0 0.65 1.00 -10622 AIFM2 apoptosis-inducing factor, mitochondrion-associated, 2 254632 2 2 2 0 2 0 0 0 0 0 0.65 1.00 -10623 RAX retina and anterior neural fold homeobox 108612 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10624 CALML4 calmodulin-like 4 134344 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -10625 C1orf59 chromosome 1 open reading frame 59 271040 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -10626 TRPV3 transient receptor potential cation channel, subfamily V, member 3 529608 3 3 3 1 1 0 1 0 1 0 0.65 1.00 -10627 SGTA small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha 209680 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -10628 SRD5A3 steroid 5 alpha-reductase 3 194264 1 1 1 2 0 0 1 0 0 0 0.65 1.00 -10629 KRT81 keratin 81 187256 1 1 1 2 1 0 0 0 0 0 0.65 1.00 -10630 QTRT1 queuine tRNA-ribosyltransferase 1 (tRNA-guanine transglycosylase) 273140 2 2 2 0 1 1 0 0 0 0 0.65 1.00 -10631 ZNF613 zinc finger protein 613 418880 2 2 2 1 1 0 1 0 0 0 0.65 1.00 -10632 FSD2 fibronectin type III and SPRY domain containing 2 505232 3 3 3 2 0 2 1 0 0 0 0.65 1.00 -10633 SRI sorcin 130816 1 1 1 1 1 0 0 0 0 0 0.65 1.00 -10634 TMEM149 transmembrane protein 149 218456 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -10635 LMOD1 leiomodin 1 (smooth muscle) 403976 3 3 3 0 0 2 1 0 0 0 0.65 1.00 -10636 C1QL2 complement component 1, q subcomponent-like 2 97140 1 1 1 2 1 0 0 0 0 0 0.65 1.00 -10637 SULT1C3 sulfotransferase family, cytosolic, 1C, member 3 211232 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -10638 SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome) 214816 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10639 ARMC9 armadillo repeat containing 9 465472 4 3 4 1 0 2 1 0 1 0 0.65 1.00 -10640 AGPHD1 254912 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -10641 APOL5 apolipoprotein L, 5 285488 3 2 3 1 1 1 1 0 0 0 0.65 1.00 -10642 C15orf23 chromosome 15 open reading frame 23 227604 2 2 2 1 1 0 1 0 0 0 0.65 1.00 -10643 ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa 210224 2 2 2 0 0 1 1 0 0 0 0.65 1.00 -10644 PRSS21 protease, serine, 21 (testisin) 176100 1 1 1 2 0 1 0 0 0 0 0.65 1.00 -10645 ARF6 ADP-ribosylation factor 6 118496 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -10646 LOXL3 lysyl oxidase-like 3 505652 5 4 5 3 1 2 2 0 0 0 0.65 1.00 -10647 CHRNB1 cholinergic receptor, nicotinic, beta 1 (muscle) 339640 3 3 3 3 1 1 0 0 1 0 0.65 1.00 -10648 A2ML1 alpha-2-macroglobulin-like 1 1009120 9 6 9 9 4 3 2 0 0 0 0.65 1.00 -10649 RGS3 regulator of G-protein signaling 3 894680 10 7 10 2 6 3 0 0 1 0 0.65 1.00 -10650 PIGT phosphatidylinositol glycan anchor biosynthesis, class T 397392 3 3 3 1 1 2 0 0 0 0 0.65 1.00 -10651 INTS5 integrator complex subunit 5 664468 6 5 6 0 5 1 0 0 0 0 0.65 1.00 -10652 UPK3A uroplakin 3A 186096 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -10653 FAM58A family with sequence similarity 58, member A 145824 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -10654 BIRC8 baculoviral IAP repeat-containing 8 160160 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -10655 HOXD12 homeobox D12 130844 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10656 NEB nebulin 4613672 55 19 52 17 18 21 9 1 4 2 0.65 1.00 -10657 RBP4 retinol binding protein 4, plasma 127028 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10658 ARHGAP26 Rho GTPase activating protein 26 566632 4 4 4 2 3 0 1 0 0 0 0.65 1.00 -10659 LARP6 La ribonucleoprotein domain family, member 6 306880 2 2 2 3 2 0 0 0 0 0 0.65 1.00 -10660 SNTG2 syntrophin, gamma 2 283136 2 2 2 6 2 0 0 0 0 0 0.65 1.00 -10661 KCNAB3 potassium voltage-gated channel, shaker-related subfamily, beta member 3 243348 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10662 POMT1 protein-O-mannosyltransferase 1 505304 4 4 4 3 1 2 1 0 0 0 0.65 1.00 -10663 TMEM41A transmembrane protein 41A 181656 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10664 OR2J2 olfactory receptor, family 2, subfamily J, member 2 211232 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -10665 RTN4RL2 reticulon 4 receptor-like 2 196644 2 2 2 0 1 0 1 0 0 0 0.65 1.00 -10666 PAPOLA poly(A) polymerase alpha 521024 3 3 3 1 0 3 0 0 0 0 0.65 1.00 -10667 SLC23A3 solute carrier family 23 (nucleobase transporters), member 3 348544 1 1 1 1 0 1 0 0 0 0 0.65 1.00 -10668 C1orf9 chromosome 1 open reading frame 9 855800 9 5 9 1 1 5 3 0 0 0 0.65 1.00 -10669 ACOT9 acyl-CoA thioesterase 9 310688 2 2 1 2 2 0 0 0 0 0 0.65 1.00 -10670 HM13 histocompatibility (minor) 13 274036 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -10671 MMP1 matrix metallopeptidase 1 (interstitial collagenase) 324800 2 2 2 0 0 0 2 0 0 0 0.65 1.00 -10672 GTF2B general transcription factor IIB 218792 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10673 ALB albumin 422464 4 3 3 2 2 1 1 0 0 0 0.65 1.00 -10674 SP1 Sp1 transcription factor 533568 2 2 2 0 0 2 0 0 0 0 0.65 1.00 -10675 EPN1 epsin 1 333924 2 2 2 0 1 0 0 0 1 0 0.65 1.00 -10676 DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 412384 2 2 2 1 0 0 0 0 2 0 0.65 1.00 -10677 TNXB tenascin XB 1806584 17 14 17 8 9 4 2 0 2 0 0.65 1.00 -10678 MAP3K5 mitogen-activated protein kinase kinase kinase 5 910504 7 7 7 0 1 3 3 0 0 0 0.65 1.00 -10679 SMC5 structural maintenance of chromosomes 5 762944 6 5 6 2 2 1 2 0 1 0 0.65 1.00 -10680 SOX13 SRY (sex determining region Y)-box 13 409840 2 2 2 1 0 1 1 0 0 0 0.65 1.00 -10681 PPP3R2 protein phosphatase 3 (formerly 2B), regulatory subunit B, beta isoform 117824 1 1 1 1 1 0 0 0 0 0 0.65 1.00 -10682 TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 750704 5 5 5 2 2 2 0 0 1 0 0.65 1.00 -10683 DOCK7 dedicator of cytokinesis 7 1449560 16 8 16 4 5 4 5 0 0 2 0.65 1.00 -10684 LTK leukocyte receptor tyrosine kinase 476308 3 3 3 1 0 3 0 0 0 0 0.65 1.00 -10685 C17orf85 chromosome 17 open reading frame 85 236768 1 1 1 1 0 0 0 0 1 0 0.65 1.00 -10686 THBS3 thrombospondin 3 657412 3 3 3 3 1 0 1 0 1 0 0.65 1.00 -10687 PLEKHG7 pleckstrin homology domain containing, family G (with RhoGef domain) member 7 265216 2 2 2 1 2 0 0 0 0 0 0.65 1.00 -10688 PPP4R2 protein phosphatase 4, regulatory subunit 2 283288 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -10689 COX10 COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast) 301448 2 2 2 0 0 2 0 0 0 0 0.65 1.00 -10690 PTPN7 protein tyrosine phosphatase, non-receptor type 7 276696 2 2 2 0 0 1 1 0 0 0 0.65 1.00 -10691 NPRL3 342200 3 3 3 0 1 2 0 0 0 0 0.65 1.00 -10692 ZSCAN5A 337568 3 2 3 1 1 2 0 0 0 0 0.65 1.00 -10693 DLX3 distal-less homeobox 3 192780 2 2 2 0 2 0 0 0 0 0 0.65 1.00 -10694 OR8H2 olfactory receptor, family 8, subfamily H, member 2 211232 1 1 1 3 0 0 1 0 0 0 0.65 1.00 -10695 INTS2 integrator complex subunit 2 830392 4 4 4 2 2 1 1 0 0 0 0.65 1.00 -10696 HIRIP3 HIRA interacting protein 3 380156 3 3 3 0 1 0 2 0 0 0 0.65 1.00 -10697 CSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C) 309876 2 2 2 3 1 1 0 0 0 0 0.65 1.00 -10698 WNT9B wingless-type MMTV integration site family, member 9B 215348 2 2 2 0 0 2 0 0 0 0 0.65 1.00 -10699 CDK5R1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 191912 1 1 1 1 0 0 0 0 1 0 0.65 1.00 -10700 POM121 POM121 membrane glycoprotein (rat) 599956 4 4 4 1 4 0 0 0 0 0 0.65 1.00 -10701 RAB1B RAB1B, member RAS oncogene family 130376 1 1 1 1 1 0 0 0 0 0 0.65 1.00 -10702 CAPZB capping protein (actin filament) muscle Z-line, beta 189952 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10703 DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2 333620 2 2 2 1 2 0 0 0 0 0 0.65 1.00 -10704 C2orf57 chromosome 2 open reading frame 57 267008 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -10705 ADPRHL2 ADP-ribosylhydrolase like 2 201824 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -10706 ZNF490 zinc finger protein 490 360640 3 3 3 1 0 3 0 0 0 0 0.65 1.00 -10707 MRRF mitochondrial ribosome recycling factor 182112 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10708 ACBD5 acyl-Coenzyme A binding domain containing 5 342944 2 2 2 1 1 1 0 0 0 0 0.65 1.00 -10709 GPR85 G protein-coupled receptor 85 250208 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -10710 PAK1IP1 PAK1 interacting protein 1 273056 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -10711 CHRM5 cholinergic receptor, muscarinic 5 359072 2 2 2 1 0 1 1 0 0 0 0.65 1.00 -10712 ERC1 ELKS/RAB6-interacting/CAST family member 1 766752 6 4 6 3 2 1 1 0 2 0 0.65 1.00 -10713 ITGAD integrin, alpha D 807660 8 7 8 3 4 2 2 0 0 0 0.65 1.00 -10714 TBP TATA box binding protein 232680 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -10715 BEGAIN brain-enriched guanylate kinase-associated homolog (rat) 270456 2 2 2 0 1 0 0 0 1 0 0.65 1.00 -10716 ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3 495936 3 3 3 2 0 1 1 0 1 0 0.65 1.00 -10717 RCL1 RNA terminal phosphate cyclase-like 1 259392 2 2 2 0 1 1 0 0 0 0 0.65 1.00 -10718 OR8D4 olfactory receptor, family 8, subfamily D, member 4 212576 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -10719 GAS8 growth arrest-specific 8 329548 2 2 2 0 0 1 0 0 1 0 0.65 1.00 -10720 DCUN1D2 DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae) 179424 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -10721 QSOX1 quiescin Q6 sulfhydryl oxidase 1 453480 4 4 4 3 0 2 2 0 0 0 0.65 1.00 -10722 CDRT1 CMT1A duplicated region transcript 1 513252 4 4 3 0 3 0 0 0 1 0 0.65 1.00 -10723 TIRAP toll-interleukin 1 receptor (TIR) domain containing adaptor protein 165760 1 1 1 2 1 0 0 0 0 0 0.65 1.00 -10724 HEPHL1 hephaestin-like 1 791728 8 5 8 3 3 3 0 0 0 2 0.65 1.00 -10725 ZBTB11 zinc finger and BTB domain containing 11 700672 6 4 6 1 1 3 0 0 2 0 0.65 1.00 -10726 COG3 component of oligomeric golgi complex 3 564604 3 3 3 1 1 1 1 0 0 0 0.65 1.00 -10727 PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2 158564 2 2 2 0 0 1 1 0 0 0 0.65 1.00 -10728 WIBG within bgcn homolog (Drosophila) 131264 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -10729 CNN1 calponin 1, basic, smooth muscle 206528 1 1 1 3 1 0 0 0 0 0 0.65 1.00 -10730 XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1 441144 2 2 2 1 2 0 0 0 0 0 0.65 1.00 -10731 ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 465948 3 3 3 2 2 0 1 0 0 0 0.65 1.00 -10732 WDR12 WD repeat domain 12 296576 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -10733 NAT8B N-acetyltransferase 8B (gene/pseudogene) 153608 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -10734 RCC1 regulator of chromosome condensation 1 305228 3 3 3 2 3 0 0 0 0 0 0.66 1.00 -10735 CHAC1 ChaC, cation transport regulator homolog 1 (E. coli) 137312 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10736 SELL selectin L (lymphocyte adhesion molecule 1) 247184 3 1 3 0 0 1 1 0 1 0 0.66 1.00 -10737 BIN1 bridging integrator 1 365900 2 2 2 1 0 2 0 0 0 0 0.66 1.00 -10738 FBLIM1 filamin binding LIM protein 1 253636 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -10739 AOX1 aldehyde oxidase 1 923888 8 5 8 5 2 3 1 0 2 0 0.66 1.00 -10740 MYADM myeloid-associated differentiation marker 217952 2 2 2 0 2 0 0 0 0 0 0.66 1.00 -10741 KIF5C kinesin family member 5C 592712 7 4 7 7 2 4 1 0 0 0 0.66 1.00 -10742 C2orf28 chromosome 2 open reading frame 28 142660 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -10743 AIG1 androgen-induced 1 165984 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -10744 C17orf98 106848 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10745 IL34 164320 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -10746 FAM189B 381200 2 2 2 0 0 1 0 0 1 0 0.66 1.00 -10747 ZNF77 zinc finger protein 77 368928 3 2 3 0 1 1 0 0 1 0 0.66 1.00 -10748 HLA-G major histocompatibility complex, class I, G 177324 2 2 2 3 0 2 0 0 0 0 0.66 1.00 -10749 C2orf84 143584 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -10750 UBIAD1 UbiA prenyltransferase domain containing 1 229516 2 2 1 0 0 2 0 0 0 0 0.66 1.00 -10751 OPA1 optic atrophy 1 (autosomal dominant) 704736 4 4 4 0 1 0 3 0 0 0 0.66 1.00 -10752 FRMD3 FERM domain containing 3 414400 2 2 2 1 1 0 1 0 0 0 0.66 1.00 -10753 MYEOV myeloma overexpressed gene (in a subset of t(11;14) positive multiple myelomas) 203416 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10754 FAM98A family with sequence similarity 98, member A 355936 1 1 1 2 0 0 0 0 1 0 0.66 1.00 -10755 NCS1 119392 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -10756 RPA2 replication protein A2, 32kDa 190176 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10757 LAT2 linker for activation of T cells family, member 2 173824 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -10758 USP54 ubiquitin specific peptidase 54 1152032 7 6 7 2 0 4 2 0 1 0 0.66 1.00 -10759 C3orf1 chromosome 3 open reading frame 1 198464 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10760 ALG9 asparagine-linked glycosylation 9 homolog (S. cerevisiae, alpha- 1,2-mannosyltransferase) 388968 2 2 2 1 0 1 1 0 0 0 0.66 1.00 -10761 UCK2 uridine-cytidine kinase 2 182336 1 1 1 2 0 1 0 0 0 0 0.66 1.00 -10762 ZFP36L2 zinc finger protein 36, C3H type-like 2 161484 1 1 1 1 0 0 0 0 1 0 0.66 1.00 -10763 PDPK1 3-phosphoinositide dependent protein kinase-1 182588 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10764 GSR glutathione reductase 293664 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10765 C5orf34 chromosome 5 open reading frame 34 440160 2 2 2 0 0 1 0 0 1 0 0.66 1.00 -10766 OR8B12 olfactory receptor, family 8, subfamily B, member 12 209552 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -10767 NEFH neurofilament, heavy polypeptide 200kDa 478324 4 3 4 0 0 3 0 0 1 0 0.66 1.00 -10768 FCN3 ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen) 208768 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10769 GPR119 G protein-coupled receptor 119 226688 2 2 2 0 1 1 0 0 0 0 0.66 1.00 -10770 AQP1 aquaporin 1 (Colton blood group) 179396 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -10771 C22orf28 chromosome 22 open reading frame 28 350784 1 1 1 3 0 0 0 0 1 0 0.66 1.00 -10772 KIF14 kinesin family member 14 1134112 12 6 10 2 3 3 3 0 3 0 0.66 1.00 -10773 METTL7B methyltransferase like 7B 159496 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10774 TMEM231 166836 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -10775 ROPN1L ropporin 1-like 159712 1 1 1 2 0 1 0 0 0 0 0.66 1.00 -10776 LARP7 La ribonucleoprotein domain family, member 7 402528 1 1 1 1 0 0 0 0 1 0 0.66 1.00 -10777 PRMT7 protein arginine methyltransferase 7 468792 3 3 3 0 2 0 1 0 0 0 0.66 1.00 -10778 HPCA hippocalcin 120680 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -10779 XKR7 XK, Kell blood group complex subunit-related family, member 7 303352 2 2 2 0 1 0 1 0 0 0 0.66 1.00 -10780 RAET1L retinoic acid early transcript 1L 167664 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10781 NEURL2 neuralized homolog 2 (Drosophila) 154504 1 1 1 0 0 0 0 0 1 0 0.66 1.00 -10782 CA11 carbonic anhydrase XI 227784 2 2 2 0 1 1 0 0 0 0 0.66 1.00 -10783 SLC5A9 solute carrier family 5 (sodium/glucose cotransporter), member 9 486080 3 3 3 1 1 1 0 0 1 0 0.66 1.00 -10784 VHL von Hippel-Lindau tumor suppressor 88416 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -10785 CCDC63 coiled-coil domain containing 63 388864 3 3 3 1 1 1 1 0 0 0 0.66 1.00 -10786 RPSA ribosomal protein SA 188748 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10787 VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) 308896 2 2 2 1 1 1 0 0 0 0 0.66 1.00 -10788 LYPD5 LY6/PLAUR domain containing 5 141376 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10789 C2orf16 chromosome 2 open reading frame 16 1334816 15 7 15 3 1 10 2 0 2 0 0.66 1.00 -10790 LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 448264 3 3 3 0 1 2 0 0 0 0 0.66 1.00 -10791 ARID3C AT rich interactive domain 3C (BRIGHT-like) 240044 1 1 1 1 0 0 0 0 1 0 0.66 1.00 -10792 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 307776 4 2 4 0 1 2 1 0 0 0 0.66 1.00 -10793 SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 524048 4 4 4 0 0 1 3 0 0 0 0.66 1.00 -10794 CLDN15 claudin 15 148096 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10795 NUAK2 NUAK family, SNF1-like kinase, 2 418544 3 3 3 1 2 0 1 0 0 0 0.66 1.00 -10796 CFHR4 complement factor H-related 4 228480 1 1 1 2 0 0 1 0 0 0 0.66 1.00 -10797 LCLAT1 284256 2 2 2 1 1 1 0 0 0 0 0.66 1.00 -10798 CMPK2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial 154784 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10799 CCNB1IP1 cyclin B1 interacting protein 1 186900 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -10800 CAPN5 calpain 5 420344 5 5 5 2 5 0 0 0 0 0 0.66 1.00 -10801 ZNF575 zinc finger protein 575 111628 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10802 TMPRSS7 transmembrane protease, serine 7 398048 4 3 4 1 1 2 1 0 0 0 0.66 1.00 -10803 POTEA 346080 3 2 3 1 0 1 2 0 0 0 0.66 1.00 -10804 TMEM125 transmembrane protein 125 138856 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10805 FAP fibroblast activation protein, alpha 534688 3 3 3 2 1 2 0 0 0 0 0.66 1.00 -10806 ITSN1 intersectin 1 (SH3 domain protein) 1180736 13 6 13 3 6 3 1 1 0 2 0.66 1.00 -10807 GRM8 glutamate receptor, metabotropic 8 622048 9 5 9 6 3 4 1 0 1 0 0.66 1.00 -10808 PHACTR4 phosphatase and actin regulator 4 495264 5 4 5 0 0 3 2 0 0 0 0.66 1.00 -10809 NTNG2 netrin G2 266868 2 2 2 5 1 0 1 0 0 0 0.66 1.00 -10810 KIF21A kinesin family member 21A 1139264 12 7 12 1 2 7 2 0 1 0 0.66 1.00 -10811 PIAS2 protein inhibitor of activated STAT, 2 443520 3 3 2 0 2 1 0 0 0 0 0.66 1.00 -10812 KRT19 keratin 19 243292 2 2 2 1 0 1 0 0 1 0 0.66 1.00 -10813 C9orf82 chromosome 9 open reading frame 82 201796 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -10814 KRT18 keratin 18 258556 2 2 2 0 0 1 0 1 0 0 0.66 1.00 -10815 PCBP2 poly(rC) binding protein 2 258720 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -10816 TUBB1 tubulin, beta 1 307328 2 2 2 0 1 1 0 0 0 0 0.66 1.00 -10817 MFAP4 microfibrillar-associated protein 4 174008 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -10818 FKBP6 FK506 binding protein 6, 36kDa 224336 1 1 1 2 0 0 0 0 1 0 0.66 1.00 -10819 PBRM1 polybromo 1 1124704 6 5 6 3 0 2 2 0 2 0 0.66 1.00 -10820 PHF2 PHD finger protein 2 670216 6 5 6 3 2 2 1 0 1 0 0.66 1.00 -10821 CRLF1 cytokine receptor-like factor 1 230852 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10822 HOXB9 homeobox B9 138516 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10823 C15orf24 chromosome 15 open reading frame 24 167776 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10824 APOD apolipoprotein D 131264 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10825 PHF6 PHD finger protein 6 277536 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10826 LYPD3 LY6/PLAUR domain containing 3 237664 2 2 2 1 1 1 0 0 0 0 0.66 1.00 -10827 ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 209664 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -10828 SPP2 secreted phosphoprotein 2, 24kDa 148736 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -10829 VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 676928 6 4 6 2 2 0 2 0 2 0 0.66 1.00 -10830 TRUB2 TruB pseudouridine (psi) synthase homolog 2 (E. coli) 230272 2 2 2 0 2 0 0 0 0 0 0.66 1.00 -10831 CRX cone-rod homeobox 204288 3 2 3 1 1 2 0 0 0 0 0.66 1.00 -10832 ASXL2 additional sex combs like 2 (Drosophila) 975472 5 5 5 2 0 3 1 0 1 0 0.66 1.00 -10833 LTB lymphotoxin beta (TNF superfamily, member 3) 96460 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -10834 C14orf104 chromosome 14 open reading frame 104 386208 3 3 3 0 0 0 1 0 2 0 0.66 1.00 -10835 MED14 mediator complex subunit 14 939728 6 5 6 1 6 0 0 0 0 0 0.66 1.00 -10836 ZNF124 zinc finger protein 124 190848 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -10837 CASC4 cancer susceptibility candidate 4 302624 2 2 2 1 1 1 0 0 0 0 0.66 1.00 -10838 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 149632 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -10839 RBM33 RNA binding motif protein 33 735620 4 4 4 1 1 2 0 0 1 0 0.66 1.00 -10840 PROKR2 prokineticin receptor 2 260512 3 2 3 1 1 1 0 0 1 0 0.66 1.00 -10841 CCDC97 coiled-coil domain containing 97 230440 2 2 2 2 0 1 1 0 0 0 0.66 1.00 -10842 EIF2B2 eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa 241444 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -10843 KIF23 kinesin family member 23 666400 4 4 4 3 3 1 0 0 0 0 0.66 1.00 -10844 ANKRD13B ankyrin repeat domain 13B 309188 2 2 2 0 1 0 0 1 0 0 0.66 1.00 -10845 IFT46 249088 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -10846 TMEM116 transmembrane protein 116 171584 2 1 2 1 0 2 0 0 0 0 0.66 1.00 -10847 PAPD7 371364 5 2 5 1 2 2 0 0 1 0 0.66 1.00 -10848 NPAT nuclear protein, ataxia-telangiectasia locus 975744 5 4 5 1 1 2 1 0 1 0 0.66 1.00 -10849 TSSK2 testis-specific serine kinase 2 225092 2 2 2 0 1 0 1 0 0 0 0.66 1.00 -10850 SLC36A3 solute carrier family 36 (proton/amino acid symporter), member 3 325472 1 1 1 3 0 0 1 0 0 0 0.66 1.00 -10851 PLBD2 326412 2 2 2 1 0 1 1 0 0 0 0.66 1.00 -10852 IPO5 importin 5 769520 5 5 5 3 1 2 2 0 0 0 0.67 1.00 -10853 ZAN zonadhesin 1882808 14 9 14 3 5 5 1 0 3 0 0.67 1.00 -10854 FAM120AOS family with sequence similarity 120A opposite strand 120316 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10855 ZNF205 zinc finger protein 205 333676 5 5 4 0 3 2 0 0 0 0 0.67 1.00 -10856 KCNIP4 Kv channel interacting protein 4 206528 1 1 1 2 0 0 1 0 0 0 0.67 1.00 -10857 UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 1921080 20 11 20 6 9 7 4 0 0 0 0.67 1.00 -10858 MAGEB6 melanoma antigen family B, 6 264192 1 1 1 2 1 0 0 0 0 0 0.67 1.00 -10859 ENOX2 ecto-NOX disulfide-thiol exchanger 2 422240 2 2 1 2 2 0 0 0 0 0 0.67 1.00 -10860 SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 1056212 11 8 11 1 9 0 1 0 1 0 0.67 1.00 -10861 SNX3 sorting nexin 3 113120 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10862 ZNF585B zinc finger protein 585B 521024 7 3 7 2 0 4 2 0 1 0 0.67 1.00 -10863 PARD3 par-3 partitioning defective 3 homolog (C. elegans) 910340 7 6 7 4 3 2 1 0 1 0 0.67 1.00 -10864 TADA1 232960 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -10865 NCF1 neutrophil cytosolic factor 1, (chronic granulomatous disease, autosomal 1) 126420 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10866 TBC1D15 TBC1 domain family, member 15 483392 5 3 5 1 0 4 1 0 0 0 0.67 1.00 -10867 ELF2 E74-like factor 2 (ets domain transcription factor) 420224 2 2 2 3 0 0 1 0 1 0 0.67 1.00 -10868 AIP aryl hydrocarbon receptor interacting protein 190680 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10869 RYBP RING1 and YY1 binding protein 150752 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10870 SLC16A10 solute carrier family 16, member 10 (aromatic amino acid transporter) 311472 1 1 1 1 0 0 0 0 1 0 0.67 1.00 -10871 EEFSEC eukaryotic elongation factor, selenocysteine-tRNA-specific 349580 3 3 3 3 0 2 1 0 0 0 0.67 1.00 -10872 C9orf9 chromosome 9 open reading frame 9 117152 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10873 TMEM66 transmembrane protein 66 209888 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10874 RABL2A RAB, member of RAS oncogene family-like 2A 145824 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10875 PALM2-AKAP2 PALM2-AKAP2 751660 4 4 4 4 1 1 2 0 0 0 0.67 1.00 -10876 PRKDC protein kinase, DNA-activated, catalytic polypeptide 2731524 18 13 18 9 4 4 6 0 4 0 0.67 1.00 -10877 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 869264 8 6 8 0 3 1 3 0 1 0 0.67 1.00 -10878 XYLB xylulokinase homolog (H. influenzae) 364224 2 2 2 1 1 0 1 0 0 0 0.67 1.00 -10879 MYO18B myosin XVIIIB 1646620 20 12 20 4 11 7 2 0 0 0 0.67 1.00 -10880 MAK16 211232 1 1 1 1 0 0 0 0 1 0 0.67 1.00 -10881 ZDHHC3 zinc finger, DHHC-type containing 3 226688 1 1 1 2 1 0 0 0 0 0 0.67 1.00 -10882 ZNF546 zinc finger protein 546 566944 15 5 15 0 6 7 2 0 0 0 0.67 1.00 -10883 TXNDC11 thioredoxin domain containing 11 604268 5 5 5 1 2 3 0 0 0 0 0.67 1.00 -10884 GLTSCR2 glioma tumor suppressor candidate region gene 2 209724 2 2 2 1 0 1 1 0 0 0 0.67 1.00 -10885 CLEC1B C-type lectin domain family 1, member B 159936 2 1 2 0 1 0 1 0 0 0 0.67 1.00 -10886 PARP14 poly (ADP-ribose) polymerase family, member 14 1221416 11 6 11 1 0 5 2 1 3 0 0.67 1.00 -10887 SNAP25 synaptosomal-associated protein, 25kDa 172704 1 1 1 1 1 0 0 0 0 0 0.67 1.00 -10888 ZNF485 zinc finger protein 485 275744 1 1 1 2 0 1 0 0 0 0 0.67 1.00 -10889 C18orf21 chromosome 18 open reading frame 21 152992 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10890 ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 1045360 11 8 11 1 6 1 2 1 1 0 0.67 1.00 -10891 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 357392 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10892 CAMTA1 calmodulin binding transcription activator 1 1045904 7 7 7 5 2 4 1 0 0 0 0.67 1.00 -10893 SNX21 sorting nexin family member 21 232456 2 2 2 0 1 0 1 0 0 0 0.67 1.00 -10894 SC4MOL sterol-C4-methyl oxidase-like 202048 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10895 RPL3 ribosomal protein L3 262164 2 2 2 0 0 0 2 0 0 0 0.67 1.00 -10896 CAPNS1 calpain, small subunit 1 154908 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10897 UNC45A unc-45 homolog A (C. elegans) 625572 4 3 4 1 0 0 3 0 1 0 0.67 1.00 -10898 DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 603904 5 5 5 3 3 1 1 0 0 0 0.67 1.00 -10899 C5orf45 221088 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -10900 MYO1E myosin IE 768768 5 4 5 1 2 1 1 1 0 0 0.67 1.00 -10901 DUSP9 dual specificity phosphatase 9 156128 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10902 C17orf71 chromosome 17 open reading frame 71 670208 8 5 8 0 1 5 1 0 1 0 0.67 1.00 -10903 TMBIM1 transmembrane BAX inhibitor motif containing 1 219520 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10904 CD7 CD7 molecule 134336 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10905 MYH10 myosin, heavy chain 10, non-muscle 1364384 10 8 10 6 6 1 2 0 1 0 0.67 1.00 -10906 ACACB acetyl-Coenzyme A carboxylase beta 1693160 15 12 15 5 5 6 3 0 1 0 0.67 1.00 -10907 FFAR3 free fatty acid receptor 3 231224 1 1 1 1 0 0 0 0 1 0 0.67 1.00 -10908 DCP1B DCP1 decapping enzyme homolog B (S. cerevisiae) 418992 2 2 2 1 0 1 0 1 0 0 0.67 1.00 -10909 CYB561D1 cytochrome b-561 domain containing 1 150880 1 1 1 2 1 0 0 0 0 0 0.67 1.00 -10910 ZNF407 zinc finger protein 407 1422636 15 8 15 6 8 4 2 0 1 0 0.67 1.00 -10911 SLC22A9 solute carrier family 22 (organic anion transporter), member 9 381248 2 2 2 0 0 0 2 0 0 0 0.67 1.00 -10912 NAIF1 nuclear apoptosis inducing factor 1 205408 2 2 2 0 1 1 0 0 0 0 0.67 1.00 -10913 NFKBIB nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta 195216 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10914 MOGS 512412 3 3 3 0 2 1 0 0 0 0 0.67 1.00 -10915 PROX1 prospero homeobox 1 499520 3 3 3 3 1 0 1 0 1 0 0.67 1.00 -10916 DPP3 dipeptidyl-peptidase 3 487732 4 4 4 0 2 2 0 0 0 0 0.67 1.00 -10917 RALB v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) 142688 2 1 2 1 0 1 1 0 0 0 0.67 1.00 -10918 ERCC4 excision repair cross-complementing rodent repair deficiency, complementation group 4 624484 4 4 4 1 1 1 0 1 1 0 0.67 1.00 -10919 INPPL1 inositol polyphosphate phosphatase-like 1 769788 4 4 4 3 2 1 0 0 1 0 0.67 1.00 -10920 ASCL1 achaete-scute complex homolog 1 (Drosophila) 83580 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10921 JAZF1 JAZF zinc finger 1 168448 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10922 COL16A1 collagen, type XVI, alpha 1 1090536 6 5 6 2 3 1 1 0 1 0 0.67 1.00 -10923 LARS leucyl-tRNA synthetase 819616 5 4 5 0 1 2 1 0 1 0 0.67 1.00 -10924 DOHH deoxyhypusine hydroxylase/monooxygenase 86996 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10925 LCTL lactase-like 393344 4 3 4 2 2 1 1 0 0 0 0.67 1.00 -10926 SLC7A6OS solute carrier family 7, member 6 opposite strand 191928 1 1 1 1 1 0 0 0 0 0 0.67 1.00 -10927 GALR1 galanin receptor 1 208236 2 2 2 1 1 0 0 0 1 0 0.67 1.00 -10928 ZMYND11 zinc finger, MYND domain containing 11 422464 3 3 3 3 2 1 0 0 0 0 0.67 1.00 -10929 TLE2 transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 461880 2 2 2 1 0 0 0 0 2 0 0.67 1.00 -10930 TMED9 transmembrane emp24 protein transport domain containing 9 160164 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10931 TREH trehalase (brush-border membrane glycoprotein) 316176 2 2 2 0 1 1 0 0 0 0 0.67 1.00 -10932 DPPA2 developmental pluripotency associated 2 207200 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -10933 FZD7 frizzled homolog 7 (Drosophila) 332864 3 3 3 3 2 1 0 0 0 0 0.67 1.00 -10934 ELK4 ELK4, ETS-domain protein (SRF accessory protein 1) 324800 2 2 2 1 0 1 1 0 0 0 0.67 1.00 -10935 FECH ferrochelatase (protoporphyria) 283892 3 2 3 0 2 1 0 0 0 0 0.67 1.00 -10936 AS3MT arsenic (+3 oxidation state) methyltransferase 261408 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10937 FEZF1 FEZ family zinc finger 1 294840 3 3 3 0 0 2 1 0 0 0 0.67 1.00 -10938 PTPRF protein tyrosine phosphatase, receptor type, F 1240584 9 9 9 2 4 4 1 0 0 0 0.67 1.00 -10939 CCND2 cyclin D2 199360 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10940 ALDH3B2 aldehyde dehydrogenase 3 family, member B2 266560 1 1 1 2 0 0 1 0 0 0 0.67 1.00 -10941 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 282464 2 2 2 2 0 1 1 0 0 0 0.67 1.00 -10942 TTC7A tetratricopeptide repeat domain 7A 550536 3 3 3 1 0 2 0 0 1 0 0.67 1.00 -10943 AFAP1L1 actin filament associated protein 1-like 1 529040 4 4 4 2 0 3 1 0 0 0 0.67 1.00 -10944 FAM178A 801108 6 4 6 1 0 4 2 0 0 0 0.67 1.00 -10945 MRPL10 mitochondrial ribosomal protein L10 172928 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10946 PI4K2A phosphatidylinositol 4-kinase type 2 alpha 259588 2 2 2 1 1 1 0 0 0 0 0.67 1.00 -10947 PDE3B phosphodiesterase 3B, cGMP-inhibited 678888 3 3 3 2 1 0 0 0 2 0 0.67 1.00 -10948 ELP3 elongation protein 3 homolog (S. cerevisiae) 381696 2 2 2 1 2 0 0 0 0 0 0.67 1.00 -10949 TIGD7 tigger transposable element derived 7 370496 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10950 AMHR2 anti-Mullerian hormone receptor, type II 379400 2 2 2 2 2 0 0 0 0 0 0.67 1.00 -10951 WDR7 WD repeat domain 7 1026144 10 7 10 4 2 3 5 0 0 0 0.67 1.00 -10952 C1orf201 chromosome 1 open reading frame 201 199808 1 1 1 2 1 0 0 0 0 0 0.67 1.00 -10953 PLEKHA7 pleckstrin homology domain containing, family A member 7 730632 5 5 5 2 1 2 1 0 1 0 0.67 1.00 -10954 ZNF157 zinc finger protein 157 344288 2 2 2 0 0 1 0 0 1 0 0.67 1.00 -10955 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase, type II, beta 288368 2 2 2 2 2 0 0 0 0 0 0.67 1.00 -10956 RNF41 ring finger protein 41 218176 1 1 1 1 1 0 0 0 0 0 0.67 1.00 -10957 SESN1 sestrin 1 379904 2 2 2 1 0 1 1 0 0 0 0.67 1.00 -10958 MAML1 mastermind-like 1 (Drosophila) 596960 4 4 4 1 0 3 0 0 1 0 0.67 1.00 -10959 C20orf46 chromosome 20 open reading frame 46 171136 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -10960 CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 248696 1 1 1 2 1 0 0 0 0 0 0.67 1.00 -10961 KRCC1 lysine-rich coiled-coil 1 175616 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -10962 G3BP2 GTPase activating protein (SH3 domain) binding protein 2 334432 5 3 5 0 4 1 0 0 0 0 0.67 1.00 -10963 TCF23 transcription factor 23 121600 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -10964 AASDH aminoadipate-semialdehyde dehydrogenase 750148 4 4 4 4 1 2 1 0 0 0 0.67 1.00 -10965 BMP2K BMP2 inducible kinase 761348 4 4 4 5 2 1 0 0 1 0 0.67 1.00 -10966 LARP4 La ribonucleoprotein domain family, member 4 502432 2 2 2 0 0 1 1 0 0 0 0.67 1.00 -10967 TMPRSS11D transmembrane protease, serine 11D 290528 2 2 2 2 0 2 0 0 0 0 0.67 1.00 -10968 VENTX VENT homeobox homolog (Xenopus laevis) 85988 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -10969 CTAGE5 CTAGE family, member 5 569408 3 3 3 2 1 1 1 0 0 0 0.67 1.00 -10970 C1QL4 complement component 1, q subcomponent-like 4 109060 1 1 1 1 1 0 0 0 0 0 0.67 1.00 -10971 SGSM1 small G protein signaling modulator 1 761976 8 7 6 6 2 6 0 0 0 0 0.67 1.00 -10972 CENPB centromere protein B, 80kDa 339612 2 2 2 0 1 1 0 0 0 0 0.68 1.00 -10973 FBXL4 F-box and leucine-rich repeat protein 4 424256 2 2 2 0 1 0 0 0 1 0 0.68 1.00 -10974 TLR5 toll-like receptor 5 578144 4 4 4 0 1 3 0 0 0 0 0.68 1.00 -10975 GSTO2 glutathione S-transferase omega 2 169344 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -10976 TINAGL1 tubulointerstitial nephritis antigen-like 1 296448 2 2 2 1 2 0 0 0 0 0 0.68 1.00 -10977 PICALM phosphatidylinositol binding clathrin assembly protein 463008 2 2 2 0 0 0 2 0 0 0 0.68 1.00 -10978 C17orf46 chromosome 17 open reading frame 46 261772 2 2 2 1 1 0 1 0 0 0 0.68 1.00 -10979 CRAMP1L Crm, cramped-like (Drosophila) 572196 3 3 3 0 1 1 1 0 0 0 0.68 1.00 -10980 ASB16 ankyrin repeat and SOCS box-containing 16 215292 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -10981 MPPED1 metallophosphoesterase domain containing 1 174748 1 1 1 2 1 0 0 0 0 0 0.68 1.00 -10982 CDX2 caudal type homeobox 2 152080 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -10983 RWDD3 RWD domain containing 3 183472 1 1 1 1 0 0 1 0 0 0 0.68 1.00 -10984 SEPT6 septin 6 301584 1 1 1 2 0 1 0 0 0 0 0.68 1.00 -10985 SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 258720 2 2 2 0 2 0 0 0 0 0 0.68 1.00 -10986 CTH cystathionase (cystathionine gamma-lyase) 283584 2 2 2 0 2 0 0 0 0 0 0.68 1.00 -10987 ANXA5 annexin A5 226464 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -10988 CLEC9A C-type lectin domain family 9, member A 168000 4 1 4 1 1 2 1 0 0 0 0.68 1.00 -10989 CCDC17 coiled-coil domain containing 17 286272 2 2 2 0 0 2 0 0 0 0 0.68 1.00 -10990 KRTCAP3 keratinocyte associated protein 3 154072 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -10991 CCDC90A coiled-coil domain containing 90A 156128 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -10992 KCNJ11 potassium inwardly-rectifying channel, subfamily J, member 11 263396 2 2 2 0 2 0 0 0 0 0 0.68 1.00 -10993 SNX16 sorting nexin 16 238112 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -10994 MTNR1B melatonin receptor 1B 223496 3 2 3 1 1 1 1 0 0 0 0.68 1.00 -10995 ERICH1 glutamate-rich 1 288512 2 2 2 0 0 2 0 0 0 0 0.68 1.00 -10996 MAP3K9 mitogen-activated protein kinase kinase kinase 9 682152 4 4 4 1 2 1 0 0 1 0 0.68 1.00 -10997 MOV10 Mov10, Moloney leukemia virus 10, homolog (mouse) 692608 4 4 4 2 1 2 0 0 1 0 0.68 1.00 -10998 EMILIN2 elastin microfibril interfacer 2 609392 6 4 6 2 2 3 1 0 0 0 0.68 1.00 -10999 PRR19 proline rich 19 241696 2 2 2 0 0 2 0 0 0 0 0.68 1.00 -11000 C2orf39 chromosome 2 open reading frame 39 510580 6 4 6 2 2 3 1 0 0 0 0.68 1.00 -11001 ALOX5 arachidonate 5-lipoxygenase 391196 4 4 4 3 2 2 0 0 0 0 0.68 1.00 -11002 SLC25A42 solute carrier family 25, member 42 188972 1 1 1 1 0 0 1 0 0 0 0.68 1.00 -11003 PDCD7 programmed cell death 7 169372 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -11004 CLIP3 CAP-GLY domain containing linker protein 3 353400 3 3 3 0 2 0 1 0 0 0 0.68 1.00 -11005 MBIP MAP3K12 binding inhibitory protein 1 239904 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11006 SOBP sine oculis binding protein homolog (Drosophila) 445480 3 3 3 1 0 1 1 0 1 0 0.68 1.00 -11007 GLS2 glutaminase 2 (liver, mitochondrial) 413784 2 2 2 1 1 1 0 0 0 0 0.68 1.00 -11008 CGN cingulin 824288 7 7 7 1 4 3 0 0 0 0 0.68 1.00 -11009 FBXW2 F-box and WD repeat domain containing 2 311136 3 2 3 0 0 3 0 0 0 0 0.68 1.00 -11010 ALPK2 alpha-kinase 2 1457416 14 8 14 4 3 7 2 0 0 2 0.68 1.00 -11011 PPCS phosphopantothenoylcysteine synthetase 189168 2 2 2 0 2 0 0 0 0 0 0.68 1.00 -11012 PSTK phosphoseryl-tRNA kinase 220444 2 2 2 0 0 2 0 0 0 0 0.68 1.00 -11013 OR5AR1 olfactory receptor, family 5, subfamily AR, member 1 209888 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -11014 GAL3ST1 galactose-3-O-sulfotransferase 1 226912 2 2 2 2 1 0 0 0 1 0 0.68 1.00 -11015 LETMD1 LETM1 domain containing 1 250656 2 2 2 0 0 2 0 0 0 0 0.68 1.00 -11016 TSPAN17 tetraspanin 17 228304 2 2 2 0 1 1 0 0 0 0 0.68 1.00 -11017 NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma 221088 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -11018 ZNF174 zinc finger protein 174 295680 2 2 2 2 2 0 0 0 0 0 0.68 1.00 -11019 BEST2 bestrophin 2 288436 3 3 3 1 1 2 0 0 0 0 0.68 1.00 -11020 DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 183456 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11021 TSTA3 tissue specific transplantation antigen P35B 207876 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -11022 EGR3 early growth response 3 247492 2 2 2 0 0 1 1 0 0 0 0.68 1.00 -11023 ANO2 680208 7 4 7 2 2 3 2 0 0 0 0.68 1.00 -11024 PELO pelota homolog (Drosophila) 261184 2 2 2 1 0 2 0 0 0 0 0.68 1.00 -11025 C4orf19 chromosome 4 open reading frame 19 213472 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11026 LDHAL6B lactate dehydrogenase A-like 6B 257600 2 2 2 0 1 1 0 0 0 0 0.68 1.00 -11027 PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) 1683152 18 7 17 5 3 9 3 0 1 2 0.68 1.00 -11028 SYNPO synaptopodin 478184 3 3 3 2 0 2 0 0 1 0 0.68 1.00 -11029 SNX27 sorting nexin family member 27 315140 2 2 2 3 1 1 0 0 0 0 0.68 1.00 -11030 WDR53 WD repeat domain 53 241276 1 1 1 0 0 0 0 0 1 0 0.68 1.00 -11031 BSND Bartter syndrome, infantile, with sensorineural deafness (Barttin) 219296 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11032 USP6NL USP6 N-terminal like 514416 4 4 4 2 2 2 0 0 0 0 0.68 1.00 -11033 LCK lymphocyte-specific protein tyrosine kinase 336544 3 3 3 1 2 0 1 0 0 0 0.68 1.00 -11034 C10orf140 chromosome 10 open reading frame 140 403324 4 4 4 3 1 1 2 0 0 0 0.68 1.00 -11035 SF3A1 splicing factor 3a, subunit 1, 120kDa 514808 3 3 3 2 1 2 0 0 0 0 0.68 1.00 -11036 SP3 Sp3 transcription factor 479740 3 3 3 1 3 0 0 0 0 0 0.68 1.00 -11037 DMRT1 doublesex and mab-3 related transcription factor 1 203308 1 1 1 1 0 0 1 0 0 0 0.68 1.00 -11038 TMIGD1 transmembrane and immunoglobulin domain containing 1 182112 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11039 HUS1 HUS1 checkpoint homolog (S. pombe) 196000 1 1 1 1 0 0 1 0 0 0 0.68 1.00 -11040 GAPVD1 GTPase activating protein and VPS9 domains 1 1023232 5 4 5 5 2 0 0 0 3 0 0.68 1.00 -11041 HEATR5A HEAT repeat containing 5A 1162728 6 4 6 1 1 2 0 0 1 2 0.68 1.00 -11042 KCTD10 potassium channel tetramerisation domain containing 10 217280 1 1 1 1 0 0 0 0 1 0 0.68 1.00 -11043 CNGB1 cyclic nucleotide gated channel beta 1 835260 7 6 7 3 2 3 1 1 0 0 0.68 1.00 -11044 ATP11B ATPase, class VI, type 11B 811552 6 4 6 0 2 1 1 0 2 0 0.68 1.00 -11045 SEBOX SEBOX homeobox 174048 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -11046 NAT15 160200 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -11047 GPR151 G protein-coupled receptor 151 283136 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11048 WDR46 WD repeat domain 46 424032 6 4 6 0 3 3 0 0 0 0 0.68 1.00 -11049 POLQ polymerase (DNA directed), theta 1762116 12 9 11 4 5 3 2 0 2 0 0.68 1.00 -11050 OLFM2 olfactomedin 2 296128 3 3 3 5 3 0 0 0 0 0 0.68 1.00 -11051 PANX3 pannexin 3 267680 1 1 1 2 1 0 0 0 0 0 0.68 1.00 -11052 NCL nucleolin 490336 3 3 3 5 1 2 0 0 0 0 0.68 1.00 -11053 FKRP fukutin related protein 169932 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11054 FANCF Fanconi anemia, complementation group F 252476 2 2 2 1 0 0 2 0 0 0 0.68 1.00 -11055 ZAP70 zeta-chain (TCR) associated protein kinase 70kDa 378700 4 4 4 0 3 0 1 0 0 0 0.68 1.00 -11056 MED15 mediator complex subunit 15 489244 1 1 1 1 0 0 0 0 1 0 0.68 1.00 -11057 UBXN6 278488 3 3 3 1 2 0 1 0 0 0 0.68 1.00 -11058 PHF16 PHD finger protein 16 554036 4 3 4 1 2 2 0 0 0 0 0.68 1.00 -11059 VWA3A von Willebrand factor A domain containing 3A 684040 5 5 5 2 1 3 1 0 0 0 0.68 1.00 -11060 SLC38A5 solute carrier family 38, member 5 306136 1 1 1 1 0 0 1 0 0 0 0.68 1.00 -11061 C18orf8 chromosome 18 open reading frame 8 451192 2 2 2 1 0 1 1 0 0 0 0.68 1.00 -11062 FYCO1 FYVE and coiled-coil domain containing 1 1007440 7 7 7 3 4 0 3 0 0 0 0.68 1.00 -11063 LRIT3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 326816 3 2 3 0 0 3 0 0 0 0 0.68 1.00 -11064 SNAI1 snail homolog 1 (Drosophila) 180684 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -11065 GGCX gamma-glutamyl carboxylase 512960 5 4 5 0 2 2 1 0 0 0 0.68 1.00 -11066 ADAMTSL2 ADAMTS-like 2 302180 2 2 2 0 1 1 0 0 0 0 0.68 1.00 -11067 FIG4 FIG4 homolog (S. cerevisiae) 624936 3 3 3 0 1 1 1 0 0 0 0.68 1.00 -11068 TXNL1 thioredoxin-like 1 202048 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11069 CDC42 cell division cycle 42 (GTP binding protein, 25kDa) 154560 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -11070 TCEA3 transcription elongation factor A (SII), 3 244384 1 1 1 0 0 0 0 0 1 0 0.68 1.00 -11071 USF2 upstream transcription factor 2, c-fos interacting 145208 1 1 1 1 0 1 0 0 0 0 0.68 1.00 -11072 KIAA0947 1482112 11 8 11 3 1 8 2 0 0 0 0.68 1.00 -11073 RINL 241136 2 2 2 0 1 0 1 0 0 0 0.68 1.00 -11074 CCDC86 coiled-coil domain containing 86 232316 2 2 2 0 1 1 0 0 0 0 0.68 1.00 -11075 LHFPL4 lipoma HMGIC fusion partner-like 4 169008 1 1 1 1 0 1 0 0 0 0 0.68 1.00 -11076 PDLIM2 PDZ and LIM domain 2 (mystique) 212500 1 1 1 1 0 1 0 0 0 0 0.68 1.00 -11077 CLASP1 cytoplasmic linker associated protein 1 1010080 7 7 6 2 3 2 0 0 2 0 0.68 1.00 -11078 SOCS6 suppressor of cytokine signaling 6 361088 2 2 2 1 2 0 0 0 0 0 0.68 1.00 -11079 ERAP1 endoplasmic reticulum aminopeptidase 1 656544 5 3 5 0 0 1 2 0 0 2 0.68 1.00 -11080 REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) 290668 2 2 2 2 1 0 1 0 0 0 0.68 1.00 -11081 PTPRS protein tyrosine phosphatase, receptor type, S 1177520 9 9 9 2 6 1 2 0 0 0 0.68 1.00 -11082 MAMDC2 MAM domain containing 2 458160 2 2 2 2 0 1 1 0 0 0 0.68 1.00 -11083 PIGS phosphatidylinositol glycan anchor biosynthesis, class S 379968 2 2 2 0 1 0 1 0 0 0 0.68 1.00 -11084 TBC1D26 TBC1 domain family, member 26 156156 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -11085 DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) 617632 4 4 4 1 1 2 1 0 0 0 0.68 1.00 -11086 C1QTNF7 C1q and tumor necrosis factor related protein 7 198464 1 1 1 1 1 0 0 0 0 0 0.68 1.00 -11087 ZNF439 zinc finger protein 439 338688 8 2 6 1 0 7 1 0 0 0 0.68 1.00 -11088 HLA-F major histocompatibility complex, class I, F 221732 2 2 2 0 1 0 1 0 0 0 0.68 1.00 -11089 NHLRC2 NHL repeat containing 2 471096 2 2 2 1 0 0 2 0 0 0 0.68 1.00 -11090 C11orf49 chromosome 11 open reading frame 49 272832 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -11091 TUFM Tu translation elongation factor, mitochondrial 302016 1 1 1 2 0 0 0 0 1 0 0.68 1.00 -11092 PPP4R1 protein phosphatase 4, regulatory subunit 1 643552 4 3 4 2 1 1 1 0 1 0 0.68 1.00 -11093 LIN37 lin-37 homolog (C. elegans) 163304 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -11094 KCNG4 potassium voltage-gated channel, subfamily G, member 4 336952 3 3 3 4 2 1 0 0 0 0 0.68 1.00 -11095 LRRC25 leucine rich repeat containing 25 183232 2 2 2 1 0 2 0 0 0 0 0.68 1.00 -11096 CLIC4 chloride intracellular channel 4 176064 1 1 1 2 0 1 0 0 0 0 0.68 1.00 -11097 RNF40 ring finger protein 40 660956 5 5 5 1 3 2 0 0 0 0 0.68 1.00 -11098 SPOCD1 SPOC domain containing 1 770492 7 5 7 1 3 3 0 0 1 0 0.68 1.00 -11099 PKDCC 202048 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -11100 SLC41A2 solute carrier family 41, member 2 341152 2 2 2 0 0 2 0 0 0 0 0.68 1.00 -11101 KRT5 keratin 5 (epidermolysis bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne types) 402192 4 4 4 3 2 1 1 0 0 0 0.68 1.00 -11102 ZNF259 zinc finger protein 259 282464 2 2 1 0 0 2 0 0 0 0 0.68 1.00 -11103 SPRYD4 SPRY domain containing 4 141568 1 1 1 2 0 1 0 0 0 0 0.69 1.00 -11104 MLPH melanophilin 403788 2 2 2 1 1 0 1 0 0 0 0.69 1.00 -11105 HPR haptoglobin-related protein 238872 1 1 1 1 0 1 0 0 0 0 0.69 1.00 -11106 CD9 CD9 molecule 161056 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11107 PARP1 poly (ADP-ribose) polymerase family, member 1 702688 5 5 5 4 2 2 1 0 0 0 0.69 1.00 -11108 FOXD4 forkhead box D4 256340 3 3 3 0 2 1 0 0 0 0 0.69 1.00 -11109 MPHOSPH10 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 468160 2 2 2 1 1 1 0 0 0 0 0.69 1.00 -11110 FGF23 fibroblast growth factor 23 172032 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11111 ITM2B integral membrane protein 2B 164976 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11112 STK36 serine/threonine kinase 36, fused homolog (Drosophila) 907648 5 4 5 2 1 2 2 0 0 0 0.69 1.00 -11113 PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 425116 4 3 4 0 1 2 0 0 1 0 0.69 1.00 -11114 TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 902328 4 4 4 0 1 2 0 0 1 0 0.69 1.00 -11115 SMPDL3B sphingomyelin phosphodiesterase, acid-like 3B 336784 2 2 2 0 2 0 0 0 0 0 0.69 1.00 -11116 RAD23A RAD23 homolog A (S. cerevisiae) 246288 1 1 1 2 0 1 0 0 0 0 0.69 1.00 -11117 CCDC150 coiled-coil domain containing 150 740064 4 3 4 2 1 2 0 0 1 0 0.69 1.00 -11118 OR5H15 olfactory receptor, family 5, subfamily H, member 15 211904 1 1 1 1 0 1 0 0 0 0 0.69 1.00 -11119 ANGPTL1 angiopoietin-like 1 334208 2 2 2 0 0 1 1 0 0 0 0.69 1.00 -11120 PCSK1 proprotein convertase subtilisin/kexin type 1 519232 4 4 4 1 3 1 0 0 0 0 0.69 1.00 -11121 KLHDC3 kelch domain containing 3 266336 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11122 SLC25A34 solute carrier family 25, member 34 161224 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11123 JPH1 junctophilin 1 415576 3 3 3 1 1 1 0 0 1 0 0.69 1.00 -11124 GFRA3 GDNF family receptor alpha 3 244972 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11125 ATP5F1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 178976 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11126 LPAR5 lysophosphatidic acid receptor 5 168296 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11127 KRT6C keratin 6C 380536 2 2 2 2 0 1 1 0 0 0 0.69 1.00 -11128 KIF24 kinesin family member 24 930312 3 3 3 1 1 0 0 0 2 0 0.69 1.00 -11129 RPTOR 895912 9 8 9 4 6 3 0 0 0 0 0.69 1.00 -11130 GGTLC1 gamma-glutamyltransferase light chain 1 154420 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11131 VAV2 vav 2 guanine nucleotide exchange factor 592620 4 4 4 1 1 3 0 0 0 0 0.69 1.00 -11132 CHD3 chromodomain helicase DNA binding protein 3 1325784 12 10 12 1 4 6 1 0 1 0 0.69 1.00 -11133 WBSCR22 Williams Beuren syndrome chromosome region 22 197988 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11134 DPYSL3 dihydropyrimidinase-like 3 390408 3 2 3 3 0 2 1 0 0 0 0.69 1.00 -11135 TBCC tubulin folding cofactor C 217448 2 2 2 0 0 1 0 1 0 0 0.69 1.00 -11136 TBL2 transducin (beta)-like 2 289464 3 2 3 0 0 1 2 0 0 0 0.69 1.00 -11137 VWF von Willebrand factor 1845932 15 13 15 11 4 9 2 0 0 0 0.69 1.00 -11138 GPI glucose phosphate isomerase 391916 2 2 2 3 1 0 1 0 0 0 0.69 1.00 -11139 CP ceruloplasmin (ferroxidase) 733376 6 4 6 3 0 5 0 0 1 0 0.69 1.00 -11140 CD300LF CD300 molecule-like family member f 201824 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11141 CPPED1 214508 1 1 1 2 1 0 0 0 0 0 0.69 1.00 -11142 TATDN3 TatD DNase domain containing 3 196000 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11143 SLC26A3 solute carrier family 26, member 3 532000 3 3 3 1 1 2 0 0 0 0 0.69 1.00 -11144 PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 151268 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11145 ARMC1 armadillo repeat containing 1 195552 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11146 NUDT17 nudix (nucleoside diphosphate linked moiety X)-type motif 17 203648 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11147 SAFB2 scaffold attachment factor B2 489840 6 4 6 1 4 0 0 0 2 0 0.69 1.00 -11148 EDA ectodysplasin A 274864 2 2 2 0 0 1 0 0 1 0 0.69 1.00 -11149 NLGN3 neuroligin 3 557760 4 4 4 6 2 1 1 0 0 0 0.69 1.00 -11150 IL4I1 interleukin 4 induced 1 297692 2 2 2 1 0 0 1 0 1 0 0.69 1.00 -11151 ZNF177 zinc finger protein 177 223104 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -11152 ARRDC1 arrestin domain containing 1 249312 1 1 1 1 0 0 0 0 1 0 0.69 1.00 -11153 ACAT1 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) 281344 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -11154 DCLRE1B DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae) 361760 2 2 2 0 0 2 0 0 0 0 0.69 1.00 -11155 PHF8 PHD finger protein 8 703192 5 4 5 2 4 1 0 0 0 0 0.69 1.00 -11156 ELAVL4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 278124 2 2 2 3 1 0 1 0 0 0 0.69 1.00 -11157 CCDC3 coiled-coil domain containing 3 104128 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11158 C14orf169 chromosome 14 open reading frame 169 293020 1 1 1 0 0 0 0 0 1 0 0.69 1.00 -11159 RASA2 RAS p21 protein activator 2 570928 3 3 3 1 0 3 0 0 0 0 0.69 1.00 -11160 ACTL7B actin-like 7B 251972 4 3 3 1 3 1 0 0 0 0 0.69 1.00 -11161 RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 547204 6 4 5 2 4 1 1 0 0 0 0.69 1.00 -11162 COL13A1 collagen, type XIII, alpha 1 438776 3 3 3 1 1 2 0 0 0 0 0.69 1.00 -11163 HNF1B HNF1 homeobox B 349424 2 2 2 0 0 1 1 0 0 0 0.69 1.00 -11164 EVX2 even-skipped homeobox 2 186536 1 1 1 2 0 0 0 0 1 0 0.69 1.00 -11165 FNTA farnesyltransferase, CAAX box, alpha 220368 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11166 DHX40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 485576 4 3 4 1 2 2 0 0 0 0 0.69 1.00 -11167 PIGN phosphatidylinositol glycan anchor biosynthesis, class N 580264 2 2 2 0 0 0 1 0 1 0 0.69 1.00 -11168 PHKA2 phosphorylase kinase, alpha 2 (liver) 849008 7 6 7 6 5 1 1 0 0 0 0.69 1.00 -11169 NEU3 sialidase 3 (membrane sialidase) 299824 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11170 DCHS1 dachsous 1 (Drosophila) 1902716 13 13 13 2 8 2 2 1 0 0 0.69 1.00 -11171 PPIL5 peptidylprolyl isomerase (cyclophilin)-like 5 281372 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11172 VWCE von Willebrand factor C and EGF domains 611348 3 3 3 2 0 2 0 0 1 0 0.69 1.00 -11173 ARSI arylsulfatase family, member I 334264 3 3 3 0 2 1 0 0 0 0 0.69 1.00 -11174 PPP1R12A protein phosphatase 1, regulatory (inhibitor) subunit 12A 683680 3 3 3 1 1 0 2 0 0 0 0.69 1.00 -11175 PTPN6 protein tyrosine phosphatase, non-receptor type 6 426024 4 4 4 1 4 0 0 0 0 0 0.69 1.00 -11176 MAPK6 mitogen-activated protein kinase 6 489664 3 3 3 0 1 1 1 0 0 0 0.69 1.00 -11177 PRSS2 protease, serine, 2 (trypsin 2) 171136 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -11178 UCP2 uncoupling protein 2 (mitochondrial, proton carrier) 208824 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11179 SBF2 SET binding factor 2 1265824 8 6 8 1 3 1 2 0 0 2 0.69 1.00 -11180 AQP11 aquaporin 11 166404 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -11181 SPCS3 signal peptidase complex subunit 3 homolog (S. cerevisiae) 115096 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11182 ZDHHC18 zinc finger, DHHC-type containing 18 198096 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11183 FRMD8 FERM domain containing 8 251372 1 1 1 1 0 0 0 0 1 0 0.69 1.00 -11184 COG5 component of oligomeric golgi complex 5 596012 3 3 3 1 1 0 1 0 1 0 0.69 1.00 -11185 TRIP11 thyroid hormone receptor interactor 11 1348872 10 8 10 2 1 5 4 0 0 0 0.69 1.00 -11186 P4HA2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II 387072 2 2 2 2 0 0 1 0 1 0 0.69 1.00 -11187 BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 189056 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11188 TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain 263624 1 1 1 1 0 1 0 0 0 0 0.69 1.00 -11189 STAT4 signal transducer and activator of transcription 4 523936 3 2 3 3 0 1 2 0 0 0 0.69 1.00 -11190 POC5 379712 2 2 2 1 0 1 1 0 0 0 0.69 1.00 -11191 KLK6 kallikrein-related peptidase 6 169120 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -11192 ZNF544 zinc finger protein 544 484736 2 2 2 2 0 1 0 0 1 0 0.69 1.00 -11193 PLIN2 300608 2 2 2 1 0 1 1 0 0 0 0.69 1.00 -11194 NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 159488 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11195 STX1A syntaxin 1A (brain) 195552 2 2 2 0 2 0 0 0 0 0 0.69 1.00 -11196 ARHGAP8 Rho GTPase activating protein 8 294112 2 2 2 0 1 0 1 0 0 0 0.69 1.00 -11197 APOL2 apolipoprotein L, 2 229824 1 1 1 1 0 0 0 0 1 0 0.69 1.00 -11198 RACGAP1 Rac GTPase activating protein 1 439712 2 2 2 1 0 1 1 0 0 0 0.69 1.00 -11199 OR6B1 olfactory receptor, family 6, subfamily B, member 1 210560 1 1 1 2 1 0 0 0 0 0 0.69 1.00 -11200 ACP1 acid phosphatase 1, soluble 146944 2 1 2 1 1 1 0 0 0 0 0.69 1.00 -11201 C1orf127 chromosome 1 open reading frame 127 420244 4 3 4 3 0 3 0 0 1 0 0.69 1.00 -11202 NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 672448 6 4 6 0 5 1 0 0 0 0 0.69 1.00 -11203 TRPV4 transient receptor potential cation channel, subfamily V, member 4 592904 4 4 4 3 2 2 0 0 0 0 0.69 1.00 -11204 RPF2 215264 1 1 1 1 0 0 1 0 0 0 0.69 1.00 -11205 POF1B premature ovarian failure, 1B 410816 2 2 2 1 1 1 0 0 0 0 0.69 1.00 -11206 OR51B6 olfactory receptor, family 51, subfamily B, member 6 211232 1 1 1 2 0 0 1 0 0 0 0.69 1.00 -11207 TMEM187 transmembrane protein 187 171068 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -11208 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 324664 1 1 1 0 0 0 0 0 1 0 0.69 1.00 -11209 RNF34 ring finger protein 34 258672 2 2 2 0 1 1 0 0 0 0 0.69 1.00 -11210 SELO 299740 2 2 2 2 0 2 0 0 0 0 0.69 1.00 -11211 DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 463456 3 3 3 0 1 1 1 0 0 0 0.69 1.00 -11212 ENAH enabled homolog (Drosophila) 393608 2 2 2 0 1 0 0 0 1 0 0.69 1.00 -11213 ZNF581 zinc finger protein 581 132104 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11214 LY6G6F 168672 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11215 ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 283888 2 2 2 0 2 0 0 0 0 0 0.69 1.00 -11216 IRX2 iroquois homeobox 2 175112 2 2 2 0 1 1 0 0 0 0 0.69 1.00 -11217 SULT1A2 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 199640 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11218 PARP16 poly (ADP-ribose) polymerase family, member 16 204568 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11219 DHX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 509824 4 3 4 2 2 1 0 0 1 0 0.69 1.00 -11220 CAMSAP1 calmodulin regulated spectrin-associated protein 1 881644 9 7 9 2 2 5 1 0 1 0 0.69 1.00 -11221 RCN2 reticulocalbin 2, EF-hand calcium binding domain 186816 1 1 1 1 0 1 0 0 0 0 0.69 1.00 -11222 AP1G1 adaptor-related protein complex 1, gamma 1 subunit 573216 4 4 4 2 0 1 3 0 0 0 0.69 1.00 -11223 CHRNA6 cholinergic receptor, nicotinic, alpha 6 338016 2 2 2 1 1 1 0 0 0 0 0.69 1.00 -11224 FNIP2 folliculin interacting protein 2 717388 4 4 4 1 0 3 1 0 0 0 0.69 1.00 -11225 XPNPEP2 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound 445488 3 3 3 2 2 1 0 0 0 0 0.69 1.00 -11226 DECR2 2,4-dienoyl CoA reductase 2, peroxisomal 176036 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11227 CCDC77 coiled-coil domain containing 77 338464 3 2 3 2 1 0 2 0 0 0 0.69 1.00 -11228 SNRPB small nuclear ribonucleoprotein polypeptides B and B1 167804 1 1 1 1 0 0 1 0 0 0 0.69 1.00 -11229 NOX1 NADPH oxidase 1 384936 1 1 1 0 0 0 0 0 1 0 0.69 1.00 -11230 SCRN3 secernin 3 291872 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11231 TNNI3 troponin I type 3 (cardiac) 137436 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11232 FLNB filamin B, beta (actin binding protein 278) 1785644 16 12 15 5 5 1 7 1 2 0 0.69 1.00 -11233 TREML2 triggering receptor expressed on myeloid cells-like 2 220864 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11234 GCAT glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 236824 1 1 1 1 0 1 0 0 0 0 0.69 1.00 -11235 C15orf29 chromosome 15 open reading frame 29 213024 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -11236 GREM1 gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis) 120428 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11237 CHMP1A chromatin modifying protein 1A 157688 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -11238 ZNF500 zinc finger protein 500 265016 2 2 2 1 2 0 0 0 0 0 0.69 1.00 -11239 FOXN1 forkhead box N1 430864 3 3 3 0 3 0 0 0 0 0 0.69 1.00 -11240 STX17 syntaxin 17 209888 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11241 OVOL2 ovo-like 2 (Drosophila) 143332 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11242 ELL2 elongation factor, RNA polymerase II, 2 439068 3 3 3 1 0 3 0 0 0 0 0.70 1.00 -11243 ISG20L2 interferon stimulated exonuclease gene 20kDa-like 2 240408 1 1 1 1 0 0 1 0 0 0 0.70 1.00 -11244 WNT6 wingless-type MMTV integration site family, member 6 128856 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11245 TMEM130 transmembrane protein 130 274400 2 2 2 5 2 0 0 0 0 0 0.70 1.00 -11246 KLK9 kallikrein-related peptidase 9 164640 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11247 SNTB2 syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) 239008 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11248 MFSD11 major facilitator superfamily domain containing 11 314048 2 2 2 1 1 1 0 0 0 0 0.70 1.00 -11249 ZNF396 zinc finger protein 396 228032 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11250 NUMA1 nuclear mitotic apparatus protein 1 1375136 10 8 10 2 4 4 2 0 0 0 0.70 1.00 -11251 LASS6 LAG1 homolog, ceramide synthase 6 267680 3 2 3 0 0 1 2 0 0 0 0.70 1.00 -11252 SLC26A11 solute carrier family 26, member 11 417580 3 3 3 3 1 0 2 0 0 0 0.70 1.00 -11253 HOXD8 homeobox D8 125692 2 1 2 0 0 0 2 0 0 0 0.70 1.00 -11254 NAA30 205268 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11255 RBMS1 RNA binding motif, single stranded interacting protein 1 285152 1 1 1 1 0 0 0 0 1 0 0.70 1.00 -11256 PRTFDC1 phosphoribosyl transferase domain containing 1 152864 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11257 SNX5 sorting nexin 5 271488 1 1 1 2 0 0 1 0 0 0 0.70 1.00 -11258 SLC39A14 solute carrier family 39 (zinc transporter), member 14 336364 2 2 2 0 1 1 0 0 0 0 0.70 1.00 -11259 C4orf29 chromosome 4 open reading frame 29 262680 1 1 1 1 1 0 0 0 0 0 0.70 1.00 -11260 P4HB procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide 279688 2 2 2 0 1 0 1 0 0 0 0.70 1.00 -11261 RFFL ring finger and FYVE-like domain containing 1 249984 1 1 1 1 0 0 1 0 0 0 0.70 1.00 -11262 CR1L complement component (3b/4b) receptor 1-like 393792 3 2 3 1 0 2 0 0 1 0 0.70 1.00 -11263 MRPL19 mitochondrial ribosomal protein L19 185896 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11264 HDAC7 histone deacetylase 7 564800 4 4 4 2 3 1 0 0 0 0 0.70 1.00 -11265 ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1 295992 2 2 2 0 1 0 1 0 0 0 0.70 1.00 -11266 SEPHS2 selenophosphate synthetase 2 238000 3 2 3 0 1 2 0 0 0 0 0.70 1.00 -11267 KNDC1 kinase non-catalytic C-lobe domain (KIND) containing 1 698524 6 6 6 0 3 1 2 0 0 0 0.70 1.00 -11268 IL12A interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 176960 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11269 GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 316456 2 2 2 0 1 1 0 0 0 0 0.70 1.00 -11270 CDC25A cell division cycle 25 homolog A (S. pombe) 336504 2 2 2 2 1 1 0 0 0 0 0.70 1.00 -11271 CEP97 centrosomal protein 97kDa 590296 3 3 3 1 0 1 2 0 0 0 0.70 1.00 -11272 FAM179B 1168244 10 7 10 2 3 4 2 0 1 0 0.70 1.00 -11273 KDM5D 656740 2 2 2 0 0 1 0 0 1 0 0.70 1.00 -11274 PIGU phosphatidylinositol glycan anchor biosynthesis, class U 295256 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11275 FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32) 219968 1 1 1 1 1 0 0 0 0 0 0.70 1.00 -11276 PIK3AP1 phosphoinositide-3-kinase adaptor protein 1 543480 1 1 1 4 0 0 0 0 1 0 0.70 1.00 -11277 DUOXA2 dual oxidase maturation factor 2 210588 2 2 2 1 2 0 0 0 0 0 0.70 1.00 -11278 ZNF219 zinc finger protein 219 166476 1 1 1 0 0 0 0 0 1 0 0.70 1.00 -11279 KRT27 keratin 27 316288 2 2 2 3 1 1 0 0 0 0 0.70 1.00 -11280 LAPTM5 lysosomal associated multispanning membrane protein 5 183768 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -11281 DYX1C1 dyslexia susceptibility 1 candidate 1 312416 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11282 KIAA0100 KIAA0100 1531488 10 9 10 3 3 3 3 1 0 0 0.70 1.00 -11283 CASP7 caspase 7, apoptosis-related cysteine peptidase 232736 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11284 UTP11L UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) 177856 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11285 KLHDC7B kelch domain containing 7B 163240 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11286 CACNG6 calcium channel, voltage-dependent, gamma subunit 6 114996 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -11287 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 699104 3 3 3 0 0 2 1 0 0 0 0.70 1.00 -11288 DNALI1 dynein, axonemal, light intermediate chain 1 194208 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11289 RWDD2A RWD domain containing 2A 198688 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11290 CABP1 calcium binding protein 1 162148 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -11291 UCP1 uncoupling protein 1 (mitochondrial, proton carrier) 212352 1 1 1 3 0 0 1 0 0 0 0.70 1.00 -11292 LRIG3 leucine-rich repeats and immunoglobulin-like domains 3 715904 9 5 9 3 1 5 3 0 0 0 0.70 1.00 -11293 C9orf24 chromosome 9 open reading frame 24 194432 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11294 CD96 CD96 molecule 407232 3 2 3 1 1 2 0 0 0 0 0.70 1.00 -11295 EIF6 eukaryotic translation initiation factor 6 196364 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11296 PIGM phosphatidylinositol glycan anchor biosynthesis, class M 285824 3 2 3 1 0 2 1 0 0 0 0.70 1.00 -11297 LBX1 ladybird homeobox 1 106792 2 2 1 0 2 0 0 0 0 0 0.70 1.00 -11298 FBLN7 fibulin 7 269024 4 3 4 2 3 1 0 0 0 0 0.70 1.00 -11299 GYLTL1B glycosyltransferase-like 1B 406432 2 2 2 2 0 0 1 0 1 0 0.70 1.00 -11300 PLD4 phospholipase D family, member 4 230568 1 1 1 0 0 0 0 1 0 0 0.70 1.00 -11301 TEX264 testis expressed 264 202076 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11302 FGF8 fibroblast growth factor 8 (androgen-induced) 123048 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11303 CNNM2 cyclin M2 483224 6 4 6 2 3 1 2 0 0 0 0.70 1.00 -11304 HOXC11 homeobox C11 180824 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11305 STAP1 signal transducing adaptor family member 1 206976 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11306 SCN4B sodium channel, voltage-gated, type IV, beta 152908 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11307 SRRM3 150600 1 1 1 0 0 0 0 0 1 0 0.70 1.00 -11308 ZFP90 zinc finger protein 90 homolog (mouse) 428540 7 3 6 0 3 3 1 0 0 0 0.70 1.00 -11309 NXF3 nuclear RNA export factor 3 374528 2 2 2 0 1 1 0 0 0 0 0.70 1.00 -11310 TPI1 triosephosphate isomerase 1 166600 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11311 PIGV phosphatidylinositol glycan anchor biosynthesis, class V 334656 2 2 2 1 0 2 0 0 0 0 0.70 1.00 -11312 EFNA4 ephrin-A4 163576 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11313 KIAA1755 KIAA1755 819480 5 5 5 1 1 1 2 1 0 0 0.70 1.00 -11314 FOXRED2 FAD-dependent oxidoreductase domain containing 2 430164 2 2 2 0 0 1 1 0 0 0 0.70 1.00 -11315 GIPC3 GIPC PDZ domain containing family, member 3 160132 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11316 LCN8 lipocalin 8 106828 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11317 XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) 419664 3 3 3 1 0 3 0 0 0 0 0.70 1.00 -11318 PASD1 PAS domain containing 1 510448 2 2 2 1 0 1 1 0 0 0 0.70 1.00 -11319 LRRC14B 207592 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11320 CTSZ cathepsin Z 176736 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11321 TACC2 transforming, acidic coiled-coil containing protein 2 1885688 11 9 11 4 3 5 2 0 1 0 0.70 1.00 -11322 GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 1005732 10 7 10 2 5 1 3 0 1 0 0.70 1.00 -11323 FOLR4 167552 1 1 1 2 1 0 0 0 0 0 0.70 1.00 -11324 RAB28 RAB28, member RAS oncogene family 176092 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -11325 CC2D2B coiled-coil and C2 domain containing 2B 224224 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11326 GLTPD2 glycolipid transfer protein domain containing 2 104496 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11327 RAP2A RAP2A, member of RAS oncogene family 123844 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11328 CD320 CD320 molecule 175280 1 1 1 1 0 0 1 0 0 0 0.70 1.00 -11329 WNT3A wingless-type MMTV integration site family, member 3A 204428 1 1 1 2 0 0 1 0 0 0 0.70 1.00 -11330 RIOK3 RIO kinase 3 (yeast) 361088 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11331 RFPL3 ret finger protein-like 3 213724 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11332 AQR aquarius homolog (mouse) 1029952 7 5 7 1 2 1 2 0 2 0 0.70 1.00 -11333 MRPS15 mitochondrial ribosomal protein S15 180544 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11334 OR9I1 olfactory receptor, family 9, subfamily I, member 1 212576 2 1 2 0 1 1 0 0 0 0 0.70 1.00 -11335 C7orf31 chromosome 7 open reading frame 31 405216 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11336 YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 140000 1 1 1 1 1 0 0 0 0 0 0.70 1.00 -11337 EID2 EP300 interacting inhibitor of differentiation 2 115808 1 1 1 1 1 0 0 0 0 0 0.70 1.00 -11338 ITPRIPL1 381528 2 2 2 1 0 1 0 0 1 0 0.70 1.00 -11339 ADIPOR1 adiponectin receptor 1 258944 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -11340 DIO1 deiodinase, iodothyronine, type I 171584 1 1 1 2 0 1 0 0 0 0 0.70 1.00 -11341 DIO3 deiodinase, iodothyronine, type III 156352 3 2 3 1 2 1 0 0 0 0 0.70 1.00 -11342 ZNF749 zinc finger protein 749 524580 6 3 6 0 1 4 1 0 0 0 0.70 1.00 -11343 TIPRL TIP41, TOR signaling pathway regulator-like (S. cerevisiae) 191928 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11344 CWC22 586256 4 4 4 3 3 0 1 0 0 0 0.70 1.00 -11345 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 180096 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11346 SAMD11 sterile alpha motif domain containing 11 282912 2 2 2 0 1 0 0 1 0 0 0.70 1.00 -11347 ZNFX1 zinc finger, NFX1-type containing 1 1301216 12 9 12 5 7 2 3 0 0 0 0.70 1.00 -11348 SPATA5L1 spermatogenesis associated 5-like 1 404656 3 3 3 0 0 2 0 0 1 0 0.70 1.00 -11349 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 234528 1 1 1 1 1 0 0 0 0 0 0.70 1.00 -11350 DHCR7 7-dehydrocholesterol reductase 286748 2 2 2 1 2 0 0 0 0 0 0.70 1.00 -11351 BMP1 bone morphogenetic protein 1 672028 4 4 4 4 2 0 1 0 1 0 0.70 1.00 -11352 MUDENG 337120 2 2 2 1 0 2 0 0 0 0 0.70 1.00 -11353 EIF3H eukaryotic translation initiation factor 3, subunit H 244384 1 1 1 1 0 0 1 0 0 0 0.70 1.00 -11354 NOV nephroblastoma overexpressed gene 238000 2 2 2 0 0 1 1 0 0 0 0.70 1.00 -11355 COPS2 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) 312120 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -11356 WDR54 WD repeat domain 54 233184 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11357 RFX5 regulatory factor X, 5 (influences HLA class II expression) 414708 1 1 1 1 0 0 0 0 1 0 0.70 1.00 -11358 NR2E1 nuclear receptor subfamily 2, group E, member 1 235200 2 2 2 2 2 0 0 0 0 0 0.70 1.00 -11359 PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 282800 1 1 1 0 0 0 0 0 1 0 0.70 1.00 -11360 DNAJB7 DnaJ (Hsp40) homolog, subfamily B, member 7 209216 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11361 MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 628880 4 4 4 4 0 3 1 0 0 0 0.70 1.00 -11362 C7orf70 166124 1 1 1 2 0 1 0 0 0 0 0.70 1.00 -11363 OR7C2 olfactory receptor, family 7, subfamily C, member 2 215936 1 1 1 2 0 0 1 0 0 0 0.70 1.00 -11364 CTR9 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 811328 6 5 6 1 3 3 0 0 0 0 0.70 1.00 -11365 HES1 hairy and enhancer of split 1, (Drosophila) 153580 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -11366 TPBG trophoblast glycoprotein 230084 1 1 1 1 0 0 0 0 1 0 0.70 1.00 -11367 B3GNTL1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 211552 1 1 1 0 0 0 0 0 1 0 0.70 1.00 -11368 AUH AU RNA binding protein/enoyl-Coenzyme A hydratase 184968 1 1 1 1 1 0 0 0 0 0 0.70 1.00 -11369 ITLN1 intelectin 1 (galactofuranose binding) 217280 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -11370 ZFYVE21 zinc finger, FYVE domain containing 21 130872 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -11371 C16orf7 chromosome 16 open reading frame 7 277284 1 1 1 0 0 0 0 0 1 0 0.70 1.00 -11372 ZNF276 zinc finger protein 276 309904 2 2 2 1 1 0 0 0 1 0 0.70 1.00 -11373 AACS acetoacetyl-CoA synthetase 444208 4 4 4 0 1 2 1 0 0 0 0.71 1.00 -11374 HLA-DRB5 major histocompatibility complex, class II, DR beta 5 118440 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11375 SLC38A2 solute carrier family 38, member 2 354144 1 1 1 1 0 0 1 0 0 0 0.71 1.00 -11376 TGS1 trimethylguanosine synthase homolog (S. cerevisiae) 582000 5 3 5 0 0 3 1 0 1 0 0.71 1.00 -11377 CXCR1 236768 1 1 1 1 0 1 0 0 0 0 0.71 1.00 -11378 ALOX12 arachidonate 12-lipoxygenase 422856 2 2 2 2 0 1 0 1 0 0 0.71 1.00 -11379 ZNF217 zinc finger protein 217 708512 7 5 7 5 2 2 2 0 1 0 0.71 1.00 -11380 KIAA1279 KIAA1279 423836 2 2 2 0 1 1 0 0 0 0 0.71 1.00 -11381 TPK1 thiamin pyrophosphokinase 1 171136 3 1 3 0 1 1 1 0 0 0 0.71 1.00 -11382 ARMCX3 armadillo repeat containing, X-linked 3 256256 1 1 1 2 0 0 0 0 1 0 0.71 1.00 -11383 BRPF1 bromodomain and PHD finger containing, 1 820348 7 7 6 1 6 1 0 0 0 0 0.71 1.00 -11384 PAQR4 progestin and adipoQ receptor family member IV 139440 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11385 ASPG 237836 1 1 1 0 0 0 0 0 1 0 0.71 1.00 -11386 C9orf25 chromosome 9 open reading frame 25 111228 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11387 ABCC10 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 1002316 7 6 7 1 3 1 2 0 1 0 0.71 1.00 -11388 ZNF652 zinc finger protein 652 412384 5 3 4 0 1 3 1 0 0 0 0.71 1.00 -11389 SLC25A19 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 221088 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11390 HADH hydroxyacyl-Coenzyme A dehydrogenase 226548 1 1 1 2 1 0 0 0 0 0 0.71 1.00 -11391 ADD1 adducin 1 (alpha) 536144 3 3 3 0 2 0 1 0 0 0 0.71 1.00 -11392 BZRAP1 benzodiazapine receptor (peripheral) associated protein 1 1093664 9 8 8 2 3 5 1 0 0 0 0.71 1.00 -11393 G6PD glucose-6-phosphate dehydrogenase 355600 3 3 3 0 0 3 0 0 0 0 0.71 1.00 -11394 FOXC1 forkhead box C1 110944 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11395 MFF 238560 3 2 2 3 3 0 0 0 0 0 0.71 1.00 -11396 KRI1 KRI1 homolog (S. cerevisiae) 456148 3 3 3 1 1 1 0 0 1 0 0.71 1.00 -11397 WDR1 WD repeat domain 1 383120 3 3 3 0 1 2 0 0 0 0 0.71 1.00 -11398 MGEA5 meningioma expressed antigen 5 (hyaluronidase) 594176 2 2 2 1 0 0 2 0 0 0 0.71 1.00 -11399 CYP4F11 cytochrome P450, family 4, subfamily F, polypeptide 11 363468 2 2 2 0 1 1 0 0 0 0 0.71 1.00 -11400 ATP4B ATPase, H+/K+ exchanging, beta polypeptide 197588 1 1 1 3 0 1 0 0 0 0 0.71 1.00 -11401 RAB11A RAB11A, member RAS oncogene family 150304 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -11402 SPIRE1 spire homolog 1 (Drosophila) 407232 3 3 3 1 2 0 0 0 1 0 0.71 1.00 -11403 RPP30 ribonuclease P/MRP 30kDa subunit 207424 1 1 1 1 0 1 0 0 0 0 0.71 1.00 -11404 LGR5 leucine-rich repeat-containing G protein-coupled receptor 5 626304 2 2 2 0 0 1 0 0 1 0 0.71 1.00 -11405 PHGDH phosphoglycerate dehydrogenase 369600 2 2 2 1 0 1 1 0 0 0 0.71 1.00 -11406 YIF1B Yip1 interacting factor homolog B (S. cerevisiae) 195328 1 1 1 1 0 1 0 0 0 0 0.71 1.00 -11407 ILF3 interleukin enhancer binding factor 3, 90kDa 625352 4 4 4 1 1 2 0 0 1 0 0.71 1.00 -11408 SIRT7 sirtuin (silent mating type information regulation 2 homolog) 7 (S. cerevisiae) 143760 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11409 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 214816 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11410 NR4A1 nuclear receptor subfamily 4, group A, member 1 399504 2 2 2 0 2 0 0 0 0 0 0.71 1.00 -11411 NXNL1 nucleoredoxin-like 1 98000 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11412 PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 156128 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11413 MPRIP 661024 5 5 5 1 5 0 0 0 0 0 0.71 1.00 -11414 FAM174A 110628 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11415 MAX MYC associated factor X 188832 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11416 SLC7A7 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 348180 1 1 1 2 0 0 0 0 1 0 0.71 1.00 -11417 WDR61 WD repeat domain 61 214592 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -11418 TOX2 TOX high mobility group box family member 2 354816 2 2 2 3 2 0 0 0 0 0 0.71 1.00 -11419 COQ10A coenzyme Q10 homolog A (S. cerevisiae) 157696 1 1 1 0 0 0 1 0 0 0 0.71 1.00 -11420 HORMAD2 HORMA domain containing 2 202472 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11421 CCDC40 coiled-coil domain containing 40 771160 4 4 4 3 1 2 0 0 1 0 0.71 1.00 -11422 NSF N-ethylmaleimide-sensitive factor 257304 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11423 BTBD3 BTB (POZ) domain containing 3 355040 2 2 2 0 0 2 0 0 0 0 0.71 1.00 -11424 SHBG sex hormone-binding globulin 277984 2 2 2 1 1 1 0 0 0 0 0.71 1.00 -11425 DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 714112 7 4 7 0 2 3 1 0 1 0 0.71 1.00 -11426 DPP6 dipeptidyl-peptidase 6 562064 3 3 3 1 1 2 0 0 0 0 0.71 1.00 -11427 UNKL unkempt homolog (Drosophila)-like 175960 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11428 MRPL2 mitochondrial ribosomal protein L2 198304 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11429 CHMP4C chromatin modifying protein 4C 155472 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11430 NTRK2 neurotrophic tyrosine kinase, receptor, type 2 596512 4 4 4 3 1 2 1 0 0 0 0.71 1.00 -11431 AP1M1 adaptor-related protein complex 1, mu 1 subunit 295680 2 2 2 1 1 0 1 0 0 0 0.71 1.00 -11432 PARN poly(A)-specific ribonuclease (deadenylation nuclease) 429824 3 3 3 1 1 2 0 0 0 0 0.71 1.00 -11433 APOLD1 apolipoprotein L domain containing 1 106848 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11434 ABHD10 abhydrolase domain containing 10 210784 1 1 1 1 0 1 0 0 0 0 0.71 1.00 -11435 ZC3HAV1 zinc finger CCCH-type, antiviral 1 614464 4 3 4 3 2 0 1 1 0 0 0.71 1.00 -11436 DDX52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 416640 2 2 2 1 0 0 1 0 1 0 0.71 1.00 -11437 FAM131C family with sequence similarity 131, member C 138140 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -11438 LRBA LPS-responsive vesicle trafficking, beach and anchor containing 1974688 15 9 15 5 4 5 4 0 2 0 0.71 1.00 -11439 PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 375200 2 2 2 1 1 0 0 0 1 0 0.71 1.00 -11440 NUMB numb homolog (Drosophila) 447104 2 2 2 2 0 0 1 0 1 0 0.71 1.00 -11441 DLG1 discs, large homolog 1 (Drosophila) 653856 3 3 3 1 1 1 1 0 0 0 0.71 1.00 -11442 AIPL1 aryl hydrocarbon receptor interacting protein-like 1 264096 2 2 2 0 1 0 1 0 0 0 0.71 1.00 -11443 CYFIP2 cytoplasmic FMR1 interacting protein 2 833392 5 5 5 5 1 1 3 0 0 0 0.71 1.00 -11444 GGPS1 geranylgeranyl diphosphate synthase 1 204960 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11445 LRP5L low density lipoprotein receptor-related protein 5-like 173600 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11446 SGK494 189728 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11447 KIAA1524 KIAA1524 627648 4 3 4 1 0 3 1 0 0 0 0.71 1.00 -11448 ATG3 ATG3 autophagy related 3 homolog (S. cerevisiae) 222432 1 1 1 0 0 0 1 0 0 0 0.71 1.00 -11449 DNAJC9 DnaJ (Hsp40) homolog, subfamily C, member 9 148168 1 1 1 1 0 1 0 0 0 0 0.71 1.00 -11450 MOSPD3 motile sperm domain containing 3 154756 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -11451 CROT carnitine O-octanoyltransferase 426272 3 2 3 1 2 0 1 0 0 0 0.71 1.00 -11452 NIPAL4 266756 1 1 1 0 0 0 1 0 0 0 0.71 1.00 -11453 SRPK2 SFRS protein kinase 2 491904 4 3 4 2 0 1 3 0 0 0 0.71 1.00 -11454 ABR active BCR-related gene 613980 4 4 4 2 2 1 0 1 0 0 0.71 1.00 -11455 C1orf111 chromosome 1 open reading frame 111 178752 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11456 TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 468160 3 3 3 2 1 2 0 0 0 0 0.71 1.00 -11457 STX18 syntaxin 18 218540 1 1 1 0 0 0 0 0 1 0 0.71 1.00 -11458 CBX7 chromobox homolog 7 123284 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -11459 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 417312 4 3 3 0 2 1 1 0 0 0 0.71 1.00 -11460 GSX2 GS homeobox 2 143652 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -11461 WDR11 841064 4 4 4 7 1 1 1 0 1 0 0.71 1.00 -11462 IQSEC1 IQ motif and Sec7 domain 1 579044 4 4 4 1 2 0 1 0 1 0 0.71 1.00 -11463 OR7E24 olfactory receptor, family 7, subfamily E, member 24 229376 1 1 1 1 0 1 0 0 0 0 0.71 1.00 -11464 GRIN2C glutamate receptor, ionotropic, N-methyl D-aspartate 2C 492220 5 4 5 2 2 2 0 0 1 0 0.71 1.00 -11465 PCYOX1L prenylcysteine oxidase 1 like 317408 2 2 2 0 1 1 0 0 0 0 0.71 1.00 -11466 CYTH1 273952 2 2 2 0 1 1 0 0 0 0 0.71 1.00 -11467 LRRC2 leucine rich repeat containing 2 257152 2 1 2 1 1 0 0 0 1 0 0.71 1.00 -11468 UBE3B ubiquitin protein ligase E3B 732960 6 4 6 1 3 2 0 0 1 0 0.71 1.00 -11469 MARK2 MAP/microtubule affinity-regulating kinase 2 525180 4 4 4 2 2 1 1 0 0 0 0.71 1.00 -11470 ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) 669136 4 4 4 3 1 1 0 0 2 0 0.71 1.00 -11471 UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 361312 1 1 1 1 0 0 0 0 1 0 0.71 1.00 -11472 UQCC ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast) 210560 1 1 1 3 0 1 0 0 0 0 0.71 1.00 -11473 GRSF1 G-rich RNA sequence binding factor 1 250432 1 1 1 0 0 0 0 0 1 0 0.71 1.00 -11474 INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 642208 7 5 7 1 3 2 2 0 0 0 0.71 1.00 -11475 VTI1B vesicle transport through interaction with t-SNAREs homolog 1B (yeast) 151956 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -11476 NOMO2 NODAL modulator 2 347000 2 2 2 0 0 1 0 0 1 0 0.71 1.00 -11477 MFGE8 milk fat globule-EGF factor 8 protein 250656 2 2 2 2 1 1 0 0 0 0 0.71 1.00 -11478 C6orf47 chromosome 6 open reading frame 47 124040 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11479 OR52I1 olfactory receptor, family 52, subfamily I, member 1 219296 2 1 2 1 0 1 1 0 0 0 0.71 1.00 -11480 NPAS3 neuronal PAS domain protein 3 511556 4 4 4 2 3 0 1 0 0 0 0.71 1.00 -11481 METT11D1 methyltransferase 11 domain containing 1 335104 2 2 2 0 1 0 1 0 0 0 0.71 1.00 -11482 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 222432 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11483 TNFAIP2 tumor necrosis factor, alpha-induced protein 2 281204 1 1 1 0 0 0 0 0 1 0 0.71 1.00 -11484 HOXA13 homeobox A13 150836 1 1 1 0 0 0 0 0 1 0 0.71 1.00 -11485 GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 315168 4 2 4 0 0 3 1 0 0 0 0.71 1.00 -11486 FAAH fatty acid amide hydrolase 353476 2 2 2 1 0 1 1 0 0 0 0.71 1.00 -11487 ALKBH5 alkB, alkylation repair homolog 5 (E. coli) 206752 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11488 ALG11 asparagine-linked glycosylation 11 homolog (S. cerevisiae, alpha-1,2-mannosyltransferase) 334880 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -11489 SLC16A8 solute carrier family 16, member 8 (monocarboxylic acid transporter 3) 117124 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -11490 VN1R4 vomeronasal 1 receptor 4 203704 1 1 1 3 0 1 0 0 0 0 0.71 1.00 -11491 MTF2 metal response element binding transcription factor 2 412608 5 3 5 0 2 1 1 0 1 0 0.71 1.00 -11492 PRPH peripherin 244356 2 2 2 0 1 0 0 0 1 0 0.71 1.00 -11493 LINGO1 leucine rich repeat and Ig domain containing 1 367864 4 3 4 3 2 2 0 0 0 0 0.71 1.00 -11494 OR5M11 olfactory receptor, family 5, subfamily M, member 11 206528 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11495 EPHX3 207312 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11496 ARHGAP22 Rho GTPase activating protein 22 282640 2 2 2 1 1 1 0 0 0 0 0.72 1.00 -11497 FERMT3 fermitin family homolog 3 (Drosophila) 426368 2 2 2 0 1 0 0 1 0 0 0.72 1.00 -11498 SARS2 seryl-tRNA synthetase 2, mitochondrial 343004 2 2 2 1 1 1 0 0 0 0 0.72 1.00 -11499 SPIN3 spindlin family, member 3 174944 2 1 2 0 1 1 0 0 0 0 0.72 1.00 -11500 SFXN3 sideroflexin 3 227160 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11501 CALHM1 190092 1 1 1 1 0 0 0 0 1 0 0.72 1.00 -11502 TAS2R7 taste receptor, type 2, member 7 215264 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11503 PRSS54 270592 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11504 SALL4 sal-like 4 (Drosophila) 700616 5 5 5 2 4 0 1 0 0 0 0.72 1.00 -11505 SH3BP5L SH3-binding domain protein 5-like 235088 3 2 3 1 1 2 0 0 0 0 0.72 1.00 -11506 E2F4 E2F transcription factor 4, p107/p130-binding 258784 1 1 1 1 0 0 1 0 0 0 0.72 1.00 -11507 GIF gastric intrinsic factor (vitamin B synthesis) 288960 3 2 3 1 1 2 0 0 0 0 0.72 1.00 -11508 RNF39 ring finger protein 39 140088 1 1 1 0 0 0 0 0 1 0 0.72 1.00 -11509 PPP1R2 protein phosphatase 1, regulatory (inhibitor) subunit 2 143672 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11510 AXIN1 axin 1 472668 2 2 2 1 0 1 0 0 1 0 0.72 1.00 -11511 AADAT aminoadipate aminotransferase 291664 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11512 ST6GALNAC4 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 200564 2 2 2 0 1 1 0 0 0 0 0.72 1.00 -11513 BDNF brain-derived neurotrophic factor 236328 1 1 1 2 1 0 0 0 0 0 0.72 1.00 -11514 PRRC1 proline-rich coiled-coil 1 306880 1 1 1 0 0 0 1 0 0 0 0.72 1.00 -11515 TCEA2 transcription elongation factor A (SII), 2 199696 2 2 2 0 1 1 0 0 0 0 0.72 1.00 -11516 FRA10AC1 224000 2 1 2 1 0 2 0 0 0 0 0.72 1.00 -11517 TBC1D10A TBC1 domain family, member 10A 306292 2 2 2 2 1 0 1 0 0 0 0.72 1.00 -11518 NES nestin 998396 7 6 7 2 2 5 0 0 0 0 0.72 1.00 -11519 SH3RF3 395008 4 4 4 2 3 1 0 0 0 0 0.72 1.00 -11520 CREB1 cAMP responsive element binding protein 1 236992 1 1 1 0 0 0 1 0 0 0 0.72 1.00 -11521 C21orf63 chromosome 21 open reading frame 63 277936 2 2 2 2 0 1 1 0 0 0 0.72 1.00 -11522 PRAMEF12 PRAME family member 12 327936 2 2 2 1 0 2 0 0 0 0 0.72 1.00 -11523 RBMX2 RNA binding motif protein, X-linked 2 220256 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11524 GPA33 glycoprotein A33 (transmembrane) 221312 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11525 MMP13 matrix metallopeptidase 13 (collagenase 3) 326144 2 2 2 2 1 0 1 0 0 0 0.72 1.00 -11526 ZC3H12D zinc finger CCCH-type containing 12D 185980 2 2 2 0 1 1 0 0 0 0 0.72 1.00 -11527 CRTAP cartilage associated protein 209076 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11528 DPH1 DPH1 homolog (S. cerevisiae) 276304 2 2 2 0 1 0 0 1 0 0 0.72 1.00 -11529 DDRGK1 199024 1 1 1 0 0 0 1 0 0 0 0.72 1.00 -11530 CPNE6 copine VI (neuronal) 386568 2 2 2 1 0 0 2 0 0 0 0.72 1.00 -11531 MGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 218680 2 2 2 0 1 0 1 0 0 0 0.72 1.00 -11532 GGT7 gamma-glutamyltransferase 7 428952 4 4 4 1 4 0 0 0 0 0 0.72 1.00 -11533 AUTS2 autism susceptibility candidate 2 791568 6 6 6 6 3 1 1 0 1 0 0.72 1.00 -11534 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 284688 2 2 2 1 1 1 0 0 0 0 0.72 1.00 -11535 MMP16 matrix metallopeptidase 16 (membrane-inserted) 452480 2 2 2 3 0 0 2 0 0 0 0.72 1.00 -11536 ALG1 asparagine-linked glycosylation 1 homolog (S. cerevisiae, beta-1,4-mannosyltransferase) 267400 1 1 1 0 0 0 1 0 0 0 0.72 1.00 -11537 SPEM1 spermatid maturation 1 204744 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11538 CALR calreticulin 280980 1 1 1 2 0 1 0 0 0 0 0.72 1.00 -11539 OTUB2 OTU domain, ubiquitin aldehyde binding 2 161728 1 1 1 0 0 0 1 0 0 0 0.72 1.00 -11540 CCDC12 coiled-coil domain containing 12 118968 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11541 TRIM2 tripartite motif-containing 2 512736 5 4 5 0 3 1 1 0 0 0 0.72 1.00 -11542 C19orf21 chromosome 19 open reading frame 21 440332 2 2 2 1 0 0 2 0 0 0 0.72 1.00 -11543 CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 248308 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11544 GLUD1 glutamate dehydrogenase 1 295160 2 2 2 2 2 0 0 0 0 0 0.72 1.00 -11545 CREBZF CREB/ATF bZIP transcription factor 189392 1 1 1 2 0 0 0 0 1 0 0.72 1.00 -11546 NIPAL3 283360 3 2 3 3 1 1 1 0 0 0 0.72 1.00 -11547 MRGPRE MAS-related GPR, member E 148556 1 1 1 1 1 0 0 0 0 0 0.72 1.00 -11548 GFOD2 glucose-fructose oxidoreductase domain containing 2 261184 2 2 2 2 1 1 0 0 0 0 0.72 1.00 -11549 KIDINS220 1216768 9 9 9 2 2 5 2 0 0 0 0.72 1.00 -11550 SLC35F4 solute carrier family 35, member F4 357952 2 2 2 3 0 2 0 0 0 0 0.72 1.00 -11551 NF1 neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) 1959776 11 8 11 2 2 2 3 0 0 4 0.72 1.00 -11552 PDIA3 protein disulfide isomerase family A, member 3 337316 2 2 2 0 0 1 1 0 0 0 0.72 1.00 -11553 ALDH4A1 aldehyde dehydrogenase 4 family, member A1 351480 3 3 3 0 2 0 1 0 0 0 0.72 1.00 -11554 UBL7 ubiquitin-like 7 (bone marrow stromal cell-derived) 253160 1 1 1 1 0 1 0 0 0 0 0.72 1.00 -11555 SFMBT1 Scm-like with four mbt domains 1 600544 6 4 6 2 4 2 0 0 0 0 0.72 1.00 -11556 ERBB2IP erbb2 interacting protein 942592 7 6 7 1 2 3 2 0 0 0 0.72 1.00 -11557 CUL7 cullin 7 1159728 6 6 6 2 2 3 1 0 0 0 0.72 1.00 -11558 TEKT3 tektin 3 336224 3 3 3 2 2 1 0 0 0 0 0.72 1.00 -11559 CHDH choline dehydrogenase 295572 2 2 2 1 2 0 0 0 0 0 0.72 1.00 -11560 KIAA0494 KIAA0494 343168 1 1 1 1 0 1 0 0 0 0 0.72 1.00 -11561 KANK3 KN motif and ankyrin repeat domains 3 227192 1 1 1 0 0 0 0 0 1 0 0.72 1.00 -11562 RIPK4 receptor-interacting serine-threonine kinase 4 429100 4 4 4 1 4 0 0 0 0 0 0.72 1.00 -11563 BRI3BP BRI3 binding protein 133616 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11564 ACTR8 ARP8 actin-related protein 8 homolog (yeast) 414376 3 2 3 0 2 0 0 0 1 0 0.72 1.00 -11565 ZNF142 zinc finger protein 142 1130696 7 6 7 0 3 3 0 0 1 0 0.72 1.00 -11566 LRRC33 leucine rich repeat containing 33 466648 5 5 5 1 2 3 0 0 0 0 0.72 1.00 -11567 YTHDF3 YTH domain family, member 3 393800 1 1 1 2 0 1 0 0 0 0 0.72 1.00 -11568 AQP5 aquaporin 5 158228 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11569 RTKN2 rhotekin 2 405656 1 1 1 1 0 1 0 0 0 0 0.72 1.00 -11570 ZMYND17 zinc finger, MYND-type containing 17 315168 3 2 3 0 0 1 2 0 0 0 0.72 1.00 -11571 SIGLEC15 sialic acid binding Ig-like lectin 15 118384 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11572 PTPRH protein tyrosine phosphatase, receptor type, H 760392 5 5 5 2 4 0 1 0 0 0 0.72 1.00 -11573 PHF19 PHD finger protein 19 429548 2 2 2 2 1 0 0 0 1 0 0.72 1.00 -11574 SFXN1 sideroflexin 1 226016 1 1 1 2 1 0 0 0 0 0 0.72 1.00 -11575 MLKL mixed lineage kinase domain-like 333088 2 2 2 1 0 2 0 0 0 0 0.72 1.00 -11576 KBTBD6 kelch repeat and BTB (POZ) domain containing 6 454496 6 4 6 3 4 2 0 0 0 0 0.72 1.00 -11577 VPRBP Vpr (HIV-1) binding protein 986592 6 5 6 0 1 3 2 0 0 0 0.72 1.00 -11578 DPY19L3 dpy-19-like 3 (C. elegans) 497952 3 2 3 2 1 1 1 0 0 0 0.72 1.00 -11579 NT5DC3 5'-nucleotidase domain containing 3 333984 2 2 2 1 1 0 1 0 0 0 0.72 1.00 -11580 CDK1 208768 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11581 VSTM1 V-set and transmembrane domain containing 1 167328 1 1 1 2 0 1 0 0 0 0 0.72 1.00 -11582 SLC6A3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 406216 2 2 2 1 1 0 0 0 1 0 0.72 1.00 -11583 SRRM2 serine/arginine repetitive matrix 2 1840332 15 12 15 6 8 4 2 0 1 0 0.72 1.00 -11584 C1orf116 chromosome 1 open reading frame 116 405888 2 2 2 1 1 1 0 0 0 0 0.72 1.00 -11585 USP4 ubiquitin specific peptidase 4 (proto-oncogene) 667268 3 3 3 2 1 2 0 0 0 0 0.72 1.00 -11586 FBXO25 F-box protein 25 256256 1 1 1 0 0 0 0 0 1 0 0.72 1.00 -11587 C6orf106 chromosome 6 open reading frame 106 201328 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11588 LHX5 LIM homeobox 5 197624 1 1 1 0 0 0 0 0 1 0 0.72 1.00 -11589 CSNK1G1 casein kinase 1, gamma 1 294112 1 1 1 0 0 0 0 0 1 0 0.72 1.00 -11590 CDK9 cyclin-dependent kinase 9 245916 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11591 SYT1 synaptotagmin I 291424 1 1 1 0 0 0 0 0 1 0 0.72 1.00 -11592 L1CAM L1 cell adhesion molecule 845380 4 4 3 1 3 1 0 0 0 0 0.72 1.00 -11593 PCDHGA1 protocadherin gamma subfamily A, 1 640892 8 6 8 10 4 2 2 0 0 0 0.72 1.00 -11594 KIFAP3 kinesin-associated protein 3 550816 2 2 2 0 1 0 1 0 0 0 0.72 1.00 -11595 USP39 ubiquitin specific peptidase 39 372288 2 2 2 0 1 0 1 0 0 0 0.72 1.00 -11596 C9orf131 chromosome 9 open reading frame 131 727552 4 4 4 2 0 3 1 0 0 0 0.72 1.00 -11597 CASQ1 calsequestrin 1 (fast-twitch, skeletal muscle) 274848 2 2 2 3 0 2 0 0 0 0 0.72 1.00 -11598 HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 1072484 9 8 9 8 4 2 2 0 1 0 0.72 1.00 -11599 OXGR1 oxoglutarate (alpha-ketoglutarate) receptor 1 228032 1 1 1 0 0 0 1 0 0 0 0.72 1.00 -11600 ZNF830 zinc finger protein 830 251552 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11601 HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 248052 2 2 2 0 1 1 0 0 0 0 0.72 1.00 -11602 PLIN4 860764 5 5 5 2 3 2 0 0 0 0 0.72 1.00 -11603 CD1D CD1d molecule 222328 2 2 2 0 0 2 0 0 0 0 0.72 1.00 -11604 OR2G3 olfactory receptor, family 2, subfamily G, member 3 209216 2 1 2 0 0 2 0 0 0 0 0.72 1.00 -11605 SNPH syntaphilin 251160 1 1 1 3 0 0 1 0 0 0 0.72 1.00 -11606 MMRN1 multimerin 1 832888 11 5 11 1 3 6 1 0 1 0 0.72 1.00 -11607 IL17REL interleukin 17 receptor E-like 147620 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -11608 CCR4 chemokine (C-C motif) receptor 4 243488 1 1 1 1 0 1 0 0 0 0 0.72 1.00 -11609 DNA2 DNA replication helicase 2 homolog (yeast) 745264 6 4 6 2 1 2 2 0 1 0 0.72 1.00 -11610 ARPM1 235312 1 1 1 2 0 0 0 0 1 0 0.72 1.00 -11611 SKP2 S-phase kinase-associated protein 2 (p45) 333984 1 1 1 1 0 1 0 0 0 0 0.72 1.00 -11612 LIN28B lin-28 homolog B (C. elegans) 172256 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -11613 PRSS27 protease, serine 27 154420 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11614 SPACA1 sperm acrosome associated 1 166684 2 1 2 1 1 1 0 0 0 0 0.73 1.00 -11615 TOR1AIP1 torsin A interacting protein 1 379792 2 2 2 0 1 1 0 0 0 0 0.73 1.00 -11616 C20orf43 chromosome 20 open reading frame 43 214368 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11617 IFIT2 interferon-induced protein with tetratricopeptide repeats 2 319648 5 2 5 0 1 3 1 0 0 0 0.73 1.00 -11618 ZBTB43 zinc finger and BTB domain containing 43 315056 2 2 2 0 0 2 0 0 0 0 0.73 1.00 -11619 FKBP5 FK506 binding protein 5 318976 2 2 2 0 1 0 1 0 0 0 0.73 1.00 -11620 ZNF92 zinc finger protein 92 398048 2 2 2 1 0 2 0 0 0 0 0.73 1.00 -11621 SSBP3 single stranded DNA binding protein 3 247640 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11622 IPO11 importin 11 693584 4 4 4 1 0 2 2 0 0 0 0.73 1.00 -11623 P4HA3 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III 332192 2 2 2 1 1 0 0 0 1 0 0.73 1.00 -11624 GPR17 G protein-coupled receptor 17 243208 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11625 KRT36 keratin 36 320096 2 2 2 1 1 0 1 0 0 0 0.73 1.00 -11626 SCAI 427616 3 3 3 1 3 0 0 0 0 0 0.73 1.00 -11627 MMP8 matrix metallopeptidase 8 (neutrophil collagenase) 323456 2 1 2 2 0 1 0 0 1 0 0.73 1.00 -11628 VCX variable charge, X-linked 108136 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11629 CELA2B 188608 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11630 ELAVL3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) 253568 2 2 2 2 1 0 1 0 0 0 0.73 1.00 -11631 XRCC6BP1 XRCC6 binding protein 1 166908 2 1 2 0 1 1 0 0 0 0 0.73 1.00 -11632 PPARD peroxisome proliferator-activated receptor delta 304192 2 2 2 2 1 0 1 0 0 0 0.73 1.00 -11633 TMEM59L transmembrane protein 59-like 183008 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11634 PTPLAD1 protein tyrosine phosphatase-like A domain containing 1 239672 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11635 ZCCHC2 zinc finger, CCHC domain containing 2 570976 3 3 3 1 0 2 1 0 0 0 0.73 1.00 -11636 FOXK2 forkhead box K2 348012 2 2 2 2 1 1 0 0 0 0 0.73 1.00 -11637 SLC39A6 solute carrier family 39 (zinc transporter), member 6 518784 2 2 2 2 1 0 0 0 1 0 0.73 1.00 -11638 ZNF343 zinc finger protein 343 406784 1 1 1 1 0 0 0 0 1 0 0.73 1.00 -11639 FAM9A family with sequence similarity 9, member A 217480 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11640 NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 209664 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11641 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 578648 3 3 3 0 0 2 1 0 0 0 0.73 1.00 -11642 PPP1R3B protein phosphatase 1, regulatory (inhibitor) subunit 3B 193088 1 1 1 2 1 0 0 0 0 0 0.73 1.00 -11643 HNRNPH1 313152 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11644 METTL1 methyltransferase like 1 191520 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11645 KIAA1257 KIAA1257 281792 2 2 2 1 0 0 1 1 0 0 0.73 1.00 -11646 KL klotho 586824 4 3 4 5 0 1 3 0 0 0 0.73 1.00 -11647 TUBB tubulin, beta 282464 1 1 1 2 0 0 0 0 1 0 0.73 1.00 -11648 DKC1 dyskeratosis congenita 1, dyskerin 356664 2 2 2 3 0 1 1 0 0 0 0.73 1.00 -11649 EEF1G eukaryotic translation elongation factor 1 gamma 293504 1 1 1 0 0 0 0 0 1 0 0.73 1.00 -11650 SLC14A2 solute carrier family 14 (urea transporter), member 2 635936 4 4 4 5 2 1 1 0 0 0 0.73 1.00 -11651 ZNF695 zinc finger protein 695 350336 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11652 TAS2R41 taste receptor, type 2, member 41 207872 2 1 2 1 2 0 0 0 0 0 0.73 1.00 -11653 TRIM52 tripartite motif-containing 52 202048 2 1 2 0 0 1 1 0 0 0 0.73 1.00 -11654 TSGA10IP testis specific, 10 interacting protein 344748 2 2 2 1 1 1 0 0 0 0 0.73 1.00 -11655 FAT1 3104920 23 13 23 10 8 6 5 0 4 0 0.73 1.00 -11656 TESC tescalcin 122176 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11657 RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 681408 5 3 5 0 0 2 3 0 0 0 0.73 1.00 -11658 PAX7 paired box 7 364396 2 2 2 5 2 0 0 0 0 0 0.73 1.00 -11659 CC2D2A coiled-coil and C2 domain containing 2A 998608 6 5 5 2 4 1 0 0 1 0 0.73 1.00 -11660 AVEN apoptosis, caspase activation inhibitor 188608 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11661 MMP15 matrix metallopeptidase 15 (membrane-inserted) 379940 4 4 4 0 3 1 0 0 0 0 0.73 1.00 -11662 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 1434580 8 7 8 4 4 1 1 1 1 0 0.73 1.00 -11663 FARP2 FERM, RhoGEF and pleckstrin domain protein 2 715708 5 5 5 3 4 1 0 0 0 0 0.73 1.00 -11664 EGFL8 EGF-like-domain, multiple 8 158620 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11665 OR13J1 olfactory receptor, family 13, subfamily J, member 1 211232 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11666 PC pyruvate carboxylase 783588 6 5 6 3 4 2 0 0 0 0 0.73 1.00 -11667 STEAP4 STEAP family member 4 312704 3 2 3 0 2 1 0 0 0 0 0.73 1.00 -11668 ATXN10 ataxin 10 303744 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11669 FBXO43 F-box protein 43 469448 3 2 3 2 0 2 0 0 1 0 0.73 1.00 -11670 C16orf57 chromosome 16 open reading frame 57 184940 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11671 PPTC7 PTC7 protein phosphatase homolog (S. cerevisiae) 159488 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11672 HNF1A HNF1 homeobox A 424760 2 2 2 2 0 1 1 0 0 0 0.73 1.00 -11673 NACC1 282776 2 2 2 0 1 0 1 0 0 0 0.73 1.00 -11674 PSEN2 presenilin 2 (Alzheimer disease 4) 309428 2 2 2 2 1 1 0 0 0 0 0.73 1.00 -11675 SETD8 SET domain containing (lysine methyltransferase) 8 212896 2 1 2 1 1 1 0 0 0 0 0.73 1.00 -11676 CD34 CD34 molecule 262164 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11677 CWH43 478256 3 3 3 1 2 1 0 0 0 0 0.73 1.00 -11678 RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) 208768 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11679 CDK7 cyclin-dependent kinase 7 243936 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11680 SPEN spen homolog, transcriptional regulator (Drosophila) 2471528 23 13 23 5 7 8 5 1 2 0 0.73 1.00 -11681 VANGL1 vang-like 1 (van gogh, Drosophila) 359072 2 2 2 0 0 0 2 0 0 0 0.73 1.00 -11682 OR1L3 olfactory receptor, family 1, subfamily L, member 3 219296 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11683 HS6ST2 heparan sulfate 6-O-sulfotransferase 2 313460 2 2 2 1 1 0 1 0 0 0 0.73 1.00 -11684 PQBP1 polyglutamine binding protein 1 160192 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11685 CACNG8 calcium channel, voltage-dependent, gamma subunit 8 145020 1 1 1 2 0 1 0 0 0 0 0.73 1.00 -11686 PTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) 257180 1 1 1 1 1 0 0 0 0 0 0.73 1.00 -11687 NUDT6 nudix (nucleoside diphosphate linked moiety X)-type motif 6 202804 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11688 SCMH1 sex comb on midleg homolog 1 (Drosophila) 455840 3 3 3 2 2 1 0 0 0 0 0.73 1.00 -11689 MTMR2 myotubularin related protein 2 427392 2 2 2 2 1 0 0 0 1 0 0.73 1.00 -11690 NIN ninein (GSK3B interacting protein) 1458660 10 7 10 3 5 2 1 0 2 0 0.73 1.00 -11691 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) 178948 1 1 1 0 0 0 0 0 1 0 0.73 1.00 -11692 KLK1 kallikrein 1 181216 2 1 2 2 0 1 1 0 0 0 0.73 1.00 -11693 FAM161A 449568 4 3 4 2 0 4 0 0 0 0 0.73 1.00 -11694 C7orf46 chromosome 7 open reading frame 46 197640 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11695 MAPKAP1 mitogen-activated protein kinase associated protein 1 365344 2 2 2 0 1 0 1 0 0 0 0.73 1.00 -11696 CAMK1 calcium/calmodulin-dependent protein kinase I 259168 3 2 3 0 1 2 0 0 0 0 0.73 1.00 -11697 FAM117A family with sequence similarity 117, member A 273616 2 2 2 1 2 0 0 0 0 0 0.73 1.00 -11698 KCNA6 potassium voltage-gated channel, shaker-related subfamily, member 6 352184 3 3 3 2 3 0 0 0 0 0 0.73 1.00 -11699 FAM171A1 583296 5 4 5 5 2 2 1 0 0 0 0.73 1.00 -11700 KLK14 kallikrein-related peptidase 14 161536 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11701 SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) 402948 3 3 3 2 0 2 1 0 0 0 0.73 1.00 -11702 MCM7 minichromosome maintenance complex component 7 497112 3 3 3 2 0 2 1 0 0 0 0.73 1.00 -11703 TH1L TH1-like (Drosophila) 392308 2 2 2 1 0 1 1 0 0 0 0.73 1.00 -11704 MED1 mediator complex subunit 1 1078336 6 5 6 1 0 4 2 0 0 0 0.73 1.00 -11705 SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 259392 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11706 ZNF436 zinc finger protein 436 319200 1 1 1 2 0 1 0 0 0 0 0.73 1.00 -11707 WHSC1 Wolf-Hirschhorn syndrome candidate 1 947912 7 7 7 3 3 2 2 0 0 0 0.73 1.00 -11708 FOSB FBJ murine osteosarcoma viral oncogene homolog B 221600 2 2 2 0 2 0 0 0 0 0 0.73 1.00 -11709 ACP2 acid phosphatase 2, lysosomal 299864 2 2 2 1 2 0 0 0 0 0 0.73 1.00 -11710 RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1 460544 2 2 2 1 1 0 1 0 0 0 0.73 1.00 -11711 SNRNP35 171136 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11712 MAGEB16 melanoma antigen family B, 16 217120 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11713 TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa 338996 2 2 2 3 1 1 0 0 0 0 0.73 1.00 -11714 TSEN34 tRNA splicing endonuclease 34 homolog (S. cerevisiae) 177064 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11715 SLC35E4 solute carrier family 35, member E4 165424 1 1 1 2 1 0 0 0 0 0 0.73 1.00 -11716 DCAKD dephospho-CoA kinase domain containing 159488 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11717 STX11 syntaxin 11 181664 2 2 2 2 2 0 0 0 0 0 0.73 1.00 -11718 CLN3 ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 308448 1 1 1 1 0 0 0 0 1 0 0.73 1.00 -11719 LRRC34 leucine rich repeat containing 34 270144 1 1 1 1 0 0 1 0 0 0 0.73 1.00 -11720 DVL3 dishevelled, dsh homolog 3 (Drosophila) 473236 4 4 4 1 2 2 0 0 0 0 0.73 1.00 -11721 UBA3 ubiquitin-like modifier activating enzyme 3 322700 2 2 2 1 2 0 0 0 0 0 0.73 1.00 -11722 ASS1 argininosuccinate synthetase 1 287980 2 2 2 1 0 1 1 0 0 0 0.73 1.00 -11723 TMEM119 transmembrane protein 119 185848 1 1 1 1 1 0 0 0 0 0 0.73 1.00 -11724 AFAP1L2 actin filament associated protein 1-like 2 537772 2 2 2 1 0 2 0 0 0 0 0.73 1.00 -11725 POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 140504 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11726 CD80 CD80 molecule 198688 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11727 PPP1R7 protein phosphatase 1, regulatory (inhibitor) subunit 7 251552 2 2 2 4 0 0 2 0 0 0 0.73 1.00 -11728 SLC35B4 solute carrier family 35, member B4 221048 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -11729 B3GALTL beta 1,3-galactosyltransferase-like 332192 3 2 3 1 1 0 2 0 0 0 0.73 1.00 -11730 MAOB monoamine oxidase B 363552 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -11731 C22orf31 chromosome 22 open reading frame 31 198240 2 1 2 0 0 1 1 0 0 0 0.73 1.00 -11732 ACTR5 ARP5 actin-related protein 5 homolog (yeast) 352184 2 2 2 0 0 2 0 0 0 0 0.73 1.00 -11733 DNAJC6 DnaJ (Hsp40) homolog, subfamily C, member 6 631232 2 2 2 0 0 1 0 0 1 0 0.73 1.00 -11734 SEC16B SEC16 homolog B (S. cerevisiae) 701936 4 4 4 3 1 0 3 0 0 0 0.73 1.00 -11735 BFSP1 beaded filament structural protein 1, filensin 356800 3 2 3 1 1 1 0 0 1 0 0.73 1.00 -11736 C3orf59 chromosome 3 open reading frame 59 332416 2 2 2 2 1 1 0 0 0 0 0.73 1.00 -11737 YOD1 YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae) 204596 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11738 OR5L2 olfactory receptor, family 5, subfamily L, member 2 210560 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11739 DSN1 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) 248864 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11740 ALDH1L1 aldehyde dehydrogenase 1 family, member L1 608712 6 5 5 4 4 2 0 0 0 0 0.73 1.00 -11741 LYSMD3 LysM, putative peptidoglycan-binding, domain containing 3 208096 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -11742 LTB4R leukotriene B4 receptor 146272 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -11743 TMPRSS4 transmembrane protease, serine 4 305984 2 2 2 1 1 1 0 0 0 0 0.73 1.00 -11744 ATP2B3 ATPase, Ca++ transporting, plasma membrane 3 806016 4 4 4 5 3 1 0 0 0 0 0.73 1.00 -11745 REC8 REC8 homolog (yeast) 384136 1 1 1 0 0 0 0 0 1 0 0.73 1.00 -11746 TMEM180 transmembrane protein 180 345436 2 2 2 1 1 1 0 0 0 0 0.73 1.00 -11747 RIOK1 RIO kinase 1 (yeast) 370792 2 2 2 0 1 0 1 0 0 0 0.74 1.00 -11748 AMZ2 archaelysin family metallopeptidase 2 247968 1 1 1 1 0 1 0 0 0 0 0.74 1.00 -11749 SPRED3 sprouty-related, EVH1 domain containing 3 135152 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -11750 TTC8 tetratricopeptide repeat domain 8 359436 2 2 2 2 2 0 0 0 0 0 0.74 1.00 -11751 SLC25A11 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 211036 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -11752 HSD11B1 hydroxysteroid (11-beta) dehydrogenase 1 202272 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -11753 TMEM44 transmembrane protein 44 229632 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11754 SELPLG selectin P ligand 271248 2 2 2 1 2 0 0 0 0 0 0.74 1.00 -11755 PSMB3 proteasome (prosome, macropain) subunit, beta type, 3 143724 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11756 FAM26E family with sequence similarity 26, member E 210112 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11757 SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 863296 3 3 3 1 0 0 1 1 1 0 0.74 1.00 -11758 TXNDC15 thioredoxin domain containing 15 247072 2 2 1 0 2 0 0 0 0 0 0.74 1.00 -11759 PLXNB3 plexin B3 809068 3 3 3 0 1 0 0 1 1 0 0.74 1.00 -11760 RAVER1 ribonucleoprotein, PTB-binding 1 373724 2 2 2 0 1 0 0 0 1 0 0.74 1.00 -11761 CPNE2 copine II 377460 3 3 3 1 2 0 1 0 0 0 0.74 1.00 -11762 NEK8 NIMA (never in mitosis gene a)- related kinase 8 472116 3 3 3 2 3 0 0 0 0 0 0.74 1.00 -11763 TSSC4 tumor suppressing subtransferable candidate 4 178112 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11764 GPD1 glycerol-3-phosphate dehydrogenase 1 (soluble) 242368 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11765 PRMT6 protein arginine methyltransferase 6 216076 1 1 1 3 0 0 0 0 1 0 0.74 1.00 -11766 FER1L6 fer-1-like 6 (C. elegans) 1284416 14 8 14 3 7 6 1 0 0 0 0.74 1.00 -11767 ETS1 v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) 353920 1 1 1 2 0 0 1 0 0 0 0.74 1.00 -11768 SEC23B Sec23 homolog B (S. cerevisiae) 533120 3 3 3 2 2 1 0 0 0 0 0.74 1.00 -11769 NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 536592 4 3 4 6 0 2 1 0 1 0 0.74 1.00 -11770 RFX2 regulatory factor X, 2 (influences HLA class II expression) 412276 3 3 3 1 1 1 0 0 1 0 0.74 1.00 -11771 SYF2 SYF2 homolog, RNA splicing factor (S. cerevisiae) 170240 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11772 SYT17 synaptotagmin XVII 323784 2 2 2 1 1 1 0 0 0 0 0.74 1.00 -11773 FBXO34 F-box protein 34 479360 3 3 3 1 2 1 0 0 0 0 0.74 1.00 -11774 GALNT7 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) 452928 3 2 3 2 2 0 0 0 1 0 0.74 1.00 -11775 LAT linker for activation of T cells 187936 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11776 ZNF251 zinc finger protein 251 455168 4 3 4 1 1 2 0 0 1 0 0.74 1.00 -11777 TSC22D3 TSC22 domain family, member 3 164488 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11778 NTF3 neurotrophin 3 183820 1 1 1 2 0 1 0 0 0 0 0.74 1.00 -11779 ZDHHC1 zinc finger, DHHC-type containing 1 250872 2 2 2 0 2 0 0 0 0 0 0.74 1.00 -11780 ASPH aspartate beta-hydroxylase 673344 3 3 3 2 1 0 1 0 1 0 0.74 1.00 -11781 C10orf119 chromosome 10 open reading frame 119 432544 3 2 3 1 1 1 0 0 1 0 0.74 1.00 -11782 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 1531436 9 9 9 3 5 2 2 0 0 0 0.74 1.00 -11783 MECR mitochondrial trans-2-enoyl-CoA reductase 247956 1 1 1 2 0 0 1 0 0 0 0.74 1.00 -11784 SMOC1 SPARC related modular calcium binding 1 293272 2 2 2 0 1 1 0 0 0 0 0.74 1.00 -11785 KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 225840 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11786 CREB3L1 cAMP responsive element binding protein 3-like 1 297596 3 2 3 1 1 2 0 0 0 0 0.74 1.00 -11787 NPTX1 neuronal pentraxin I 225680 1 1 1 1 0 1 0 0 0 0 0.74 1.00 -11788 AKD1 712544 4 3 4 1 1 1 1 0 1 0 0.74 1.00 -11789 GDF10 growth differentiation factor 10 214172 2 2 2 2 2 0 0 0 0 0 0.74 1.00 -11790 OLFML3 olfactomedin-like 3 276192 3 2 3 0 2 1 0 0 0 0 0.74 1.00 -11791 IDUA iduronidase, alpha-L- 220780 1 1 1 0 0 0 0 0 1 0 0.74 1.00 -11792 HOXB2 homeobox B2 204820 1 1 1 1 0 0 0 0 1 0 0.74 1.00 -11793 GRTP1 growth hormone regulated TBC protein 1 212716 1 1 1 0 0 0 0 0 1 0 0.74 1.00 -11794 EIF2A eukaryotic translation initiation factor 2A, 65kDa 350576 2 2 2 2 0 2 0 0 0 0 0.74 1.00 -11795 RTN4IP1 reticulon 4 interacting protein 1 274848 1 1 1 1 0 1 0 0 0 0 0.74 1.00 -11796 LBP lipopolysaccharide binding protein 337344 1 1 1 1 0 1 0 0 0 0 0.74 1.00 -11797 FLT4 fms-related tyrosine kinase 4 748356 5 5 5 0 1 2 1 0 1 0 0.74 1.00 -11798 FAM71E1 family with sequence similarity 71, member E1 148248 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -11799 COG1 component of oligomeric golgi complex 1 640976 4 4 4 3 1 2 1 0 0 0 0.74 1.00 -11800 LRRC46 leucine rich repeat containing 46 223552 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11801 SLC38A8 solute carrier family 38, member 8 301952 2 2 2 1 0 2 0 0 0 0 0.74 1.00 -11802 SPATA6 spermatogenesis associated 6 340256 3 2 3 3 2 1 0 0 0 0 0.74 1.00 -11803 AHNAK AHNAK nucleoprotein 3973900 28 15 28 14 5 16 4 0 3 0 0.74 1.00 -11804 FMNL3 formin-like 3 710376 6 5 6 0 3 2 1 0 0 0 0.74 1.00 -11805 RIN3 Ras and Rab interactor 3 579544 5 5 4 2 3 2 0 0 0 0 0.74 1.00 -11806 ARHGEF37 465024 5 3 5 0 3 1 1 0 0 0 0.74 1.00 -11807 SLC25A46 solute carrier family 25, member 46 227676 2 1 2 0 0 1 1 0 0 0 0.74 1.00 -11808 C14orf159 chromosome 14 open reading frame 159 428736 3 3 3 2 0 3 0 0 0 0 0.74 1.00 -11809 FCER2 Fc fragment of IgE, low affinity II, receptor for (CD23) 221732 1 1 1 0 0 0 0 1 0 0 0.74 1.00 -11810 VPS26A vacuolar protein sorting 26 homolog A (S. pombe) 227528 1 1 1 2 0 1 0 0 0 0 0.74 1.00 -11811 APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 277856 2 2 2 1 1 1 0 0 0 0 0.74 1.00 -11812 ASB15 ankyrin repeat and SOCS box-containing 15 403872 3 2 3 0 1 2 0 0 0 0 0.74 1.00 -11813 KCNK16 potassium channel, subfamily K, member 16 218176 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11814 ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) 253932 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11815 UBR7 274912 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11816 LRP11 low density lipoprotein receptor-related protein 11 206836 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -11817 INSR insulin receptor 922800 6 6 6 6 2 2 1 0 1 0 0.74 1.00 -11818 PPIE peptidylprolyl isomerase E (cyclophilin E) 224896 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11819 NMT1 N-myristoyltransferase 1 344736 1 1 1 0 0 0 0 0 1 0 0.74 1.00 -11820 OR2A2 olfactory receptor, family 2, subfamily A, member 2 214508 2 1 2 0 0 2 0 0 0 0 0.74 1.00 -11821 MYH1 myosin, heavy chain 1, skeletal muscle, adult 1337728 16 7 16 5 3 8 3 0 0 2 0.74 1.00 -11822 TIGD2 tigger transposable element derived 2 354284 1 1 1 0 0 0 0 0 1 0 0.74 1.00 -11823 ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 821632 9 5 9 3 6 1 2 0 0 0 0.74 1.00 -11824 BMP8A bone morphogenetic protein 8a 151940 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11825 NEDD4 neural precursor cell expressed, developmentally down-regulated 4 933000 10 6 10 2 4 5 0 0 1 0 0.74 1.00 -11826 GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 232120 2 2 2 1 0 0 2 0 0 0 0.74 1.00 -11827 WDR65 WD repeat domain 65 478688 3 3 3 1 1 2 0 0 0 0 0.74 1.00 -11828 CPEB4 cytoplasmic polyadenylation element binding protein 4 499520 4 3 4 0 3 0 1 0 0 0 0.74 1.00 -11829 ERI1 219816 1 1 1 0 0 0 1 0 0 0 0.74 1.00 -11830 COQ7 coenzyme Q7 homolog, ubiquinone (yeast) 148176 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -11831 C14orf21 chromosome 14 open reading frame 21 422240 2 2 2 1 1 0 0 0 1 0 0.74 1.00 -11832 TK2 thymidine kinase 2, mitochondrial 160860 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -11833 OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 725312 4 4 4 3 1 1 2 0 0 0 0.74 1.00 -11834 CAND2 cullin-associated and neddylation-dissociated 2 (putative) 690364 6 6 6 4 5 1 0 0 0 0 0.74 1.00 -11835 KCTD14 potassium channel tetramerisation domain containing 14 165928 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -11836 NPC1 Niemann-Pick disease, type C1 868224 7 6 6 3 3 2 2 0 0 0 0.74 1.00 -11837 SURF4 surfeit 4 175168 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11838 PARVA parvin, alpha 258904 1 1 1 1 0 0 1 0 0 0 0.74 1.00 -11839 SLC25A45 solute carrier family 25, member 45 199584 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -11840 PALLD palladin, cytoskeletal associated protein 755972 5 4 5 1 2 1 2 0 0 0 0.74 1.00 -11841 DDX5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 424928 2 2 2 0 1 0 1 0 0 0 0.74 1.00 -11842 SLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 184032 1 1 1 2 0 0 1 0 0 0 0.74 1.00 -11843 PKM2 pyruvate kinase, muscle 404516 2 2 2 2 0 1 0 0 1 0 0.74 1.00 -11844 TRIM7 tripartite motif-containing 7 241136 2 2 2 1 0 1 1 0 0 0 0.74 1.00 -11845 AFF4 AF4/FMR2 family, member 4 800128 5 4 5 2 1 2 2 0 0 0 0.74 1.00 -11846 FAM160B1 519008 3 3 3 2 1 2 0 0 0 0 0.74 1.00 -11847 YTHDF1 YTH domain family, member 1 373352 2 2 2 3 1 1 0 0 0 0 0.74 1.00 -11848 EHD2 EH-domain containing 2 318104 5 4 5 2 2 3 0 0 0 0 0.74 1.00 -11849 AARS2 alanyl-tRNA synthetase 2, mitochondrial (putative) 666344 6 5 6 1 1 3 2 0 0 0 0.74 1.00 -11850 TRIM46 tripartite motif-containing 46 510588 4 3 4 0 1 2 0 0 1 0 0.74 1.00 -11851 DBNL drebrin-like 256900 1 1 1 2 0 0 1 0 0 0 0.75 1.00 -11852 HOXC4 homeobox C4 171304 2 2 2 3 1 1 0 0 0 0 0.75 1.00 -11853 ZNF655 zinc finger protein 655 451360 2 2 2 1 0 1 0 0 1 0 0.75 1.00 -11854 RAD54L RAD54-like (S. cerevisiae) 518784 3 3 3 2 1 0 2 0 0 0 0.75 1.00 -11855 MKRN2 makorin, ring finger protein, 2 283312 2 2 2 1 1 1 0 0 0 0 0.75 1.00 -11856 HLTF helicase-like transcription factor 701120 8 4 8 2 3 3 2 0 0 0 0.75 1.00 -11857 HDAC4 histone deacetylase 4 699036 5 4 5 2 0 2 2 0 1 0 0.75 1.00 -11858 CPB2 carboxypeptidase B2 (plasma) 294784 2 2 2 1 1 1 0 0 0 0 0.75 1.00 -11859 PSKH1 protein serine kinase H1 287392 1 1 1 0 0 0 0 0 1 0 0.75 1.00 -11860 TPST1 tyrosylprotein sulfotransferase 1 252896 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11861 ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 1107456 11 6 11 4 6 2 2 0 1 0 0.75 1.00 -11862 NAP1L4 nucleosome assembly protein 1-like 4 265216 1 1 1 0 0 0 0 0 1 0 0.75 1.00 -11863 INHBE inhibin, beta E 237664 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -11864 PSMB11 proteasome (prosome, macropain) subunit, beta type, 11 203168 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -11865 AARSD1 alanyl-tRNA synthetase domain containing 1 370048 2 2 2 0 1 0 1 0 0 0 0.75 1.00 -11866 RUNDC3A RUN domain containing 3A 190064 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11867 SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) 350112 2 2 2 2 2 0 0 0 0 0 0.75 1.00 -11868 SPINT2 serine peptidase inhibitor, Kunitz type, 2 151648 1 1 1 1 0 1 0 0 0 0 0.75 1.00 -11869 GRIP2 glutamate receptor interacting protein 2 697032 4 4 4 0 2 1 0 0 1 0 0.75 1.00 -11870 HOXB5 homeobox B5 160888 1 1 1 1 0 0 1 0 0 0 0.75 1.00 -11871 HCRTR1 hypocretin (orexin) receptor 1 284564 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11872 SUN2 453880 2 2 2 2 1 0 0 0 1 0 0.75 1.00 -11873 MYH2 myosin, heavy chain 2, skeletal muscle, adult 1339072 12 7 12 4 4 5 2 0 1 0 0.75 1.00 -11874 LIPG lipase, endothelial 345632 2 2 2 1 1 1 0 0 0 0 0.75 1.00 -11875 SEPN1 selenoprotein N, 1 339516 2 2 2 0 0 2 0 0 0 0 0.75 1.00 -11876 ATP6V1A ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 427840 2 2 2 1 1 1 0 0 0 0 0.75 1.00 -11877 PPP1R3D protein phosphatase 1, regulatory (inhibitor) subunit 3D 97804 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11878 FNIP1 folliculin interacting protein 1 791028 4 4 4 0 2 1 1 0 0 0 0.75 1.00 -11879 TMOD4 tropomodulin 4 (muscle) 240576 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11880 CCNB3 cyclin B3 947968 7 5 7 2 0 5 2 0 0 0 0.75 1.00 -11881 TMEM11 transmembrane protein 11 130648 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11882 MBD3 methyl-CpG binding domain protein 3 198660 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11883 CCDC149 coiled-coil domain containing 149 189504 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -11884 PDZK1 PDZ domain containing 1 266720 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11885 NHLRC1 NHL repeat containing 1 233044 2 2 2 1 1 1 0 0 0 0 0.75 1.00 -11886 PRKCD protein kinase C, delta 469360 3 3 3 0 0 1 2 0 0 0 0.75 1.00 -11887 DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 529844 4 4 4 2 2 1 1 0 0 0 0.75 1.00 -11888 COX15 COX15 homolog, cytochrome c oxidase assembly protein (yeast) 296576 3 2 2 1 1 2 0 0 0 0 0.75 1.00 -11889 PRRG3 proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) 158592 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11890 BEND3 491148 5 5 5 2 5 0 0 0 0 0 0.75 1.00 -11891 GPATCH3 G patch domain containing 3 358736 2 2 2 0 0 1 0 0 1 0 0.75 1.00 -11892 NIPSNAP3A nipsnap homolog 3A (C. elegans) 172032 2 1 2 1 1 1 0 0 0 0 0.75 1.00 -11893 HEG1 HEG homolog 1 (zebrafish) 842744 6 5 6 1 2 1 3 0 0 0 0.75 1.00 -11894 CELF2 375424 2 2 2 0 1 0 1 0 0 0 0.75 1.00 -11895 TTYH3 tweety homolog 3 (Drosophila) 230264 2 2 2 1 1 1 0 0 0 0 0.75 1.00 -11896 SDCBP syndecan binding protein (syntenin) 208096 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11897 NXN nucleoredoxin 229096 2 2 2 2 0 1 1 0 0 0 0.75 1.00 -11898 GTPBP4 GTP binding protein 4 441952 3 3 3 0 2 1 0 0 0 0 0.75 1.00 -11899 GALE UDP-galactose-4-epimerase 243488 1 1 1 2 0 0 1 0 0 0 0.75 1.00 -11900 PRKAB2 protein kinase, AMP-activated, beta 2 non-catalytic subunit 186844 1 1 1 1 0 1 0 0 0 0 0.75 1.00 -11901 CLNK 303328 3 2 3 2 1 2 0 0 0 0 0.75 1.00 -11902 TTLL1 tubulin tyrosine ligase-like family, member 1 292992 2 2 2 3 2 0 0 0 0 0 0.75 1.00 -11903 DDX54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 562716 5 4 5 3 3 1 0 0 1 0 0.75 1.00 -11904 TMEM184A transmembrane protein 184A 227864 1 1 1 0 0 0 0 0 1 0 0.75 1.00 -11905 NR1H4 nuclear receptor subfamily 1, group H, member 4 325920 2 2 2 2 1 0 0 1 0 0 0.75 1.00 -11906 PPP2R2D protein phosphatase 2, regulatory subunit B, delta isoform 284648 2 2 2 2 2 0 0 0 0 0 0.75 1.00 -11907 PBK PDZ binding kinase 223328 2 1 2 0 1 0 1 0 0 0 0.75 1.00 -11908 ACSL1 acyl-CoA synthetase long-chain family member 1 487648 4 3 4 2 1 2 1 0 0 0 0.75 1.00 -11909 MAGEB10 melanoma antigen family B, 10 231728 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11910 PRR14 proline rich 14 361816 1 1 1 2 0 0 0 0 1 0 0.75 1.00 -11911 ZNF169 zinc finger protein 169 409472 3 2 3 1 2 1 0 0 0 0 0.75 1.00 -11912 ANGPTL7 angiopoietin-like 7 237664 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11913 PABPC1L poly(A) binding protein, cytoplasmic 1-like 405832 3 3 3 0 1 0 2 0 0 0 0.75 1.00 -11914 FKBP10 FK506 binding protein 10, 65 kDa 378948 2 2 2 0 0 1 0 0 1 0 0.75 1.00 -11915 LRWD1 leucine-rich repeats and WD repeat domain containing 1 378184 2 2 2 1 2 0 0 0 0 0 0.75 1.00 -11916 STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 376096 2 2 2 0 0 2 0 0 0 0 0.75 1.00 -11917 HLA-DOA major histocompatibility complex, class II, DO alpha 119980 1 1 1 1 0 1 0 0 0 0 0.75 1.00 -11918 MPPE1 metallophosphoesterase 1 249732 1 1 1 1 0 0 1 0 0 0 0.75 1.00 -11919 DHRS12 dehydrogenase/reductase (SDR family) member 12 188876 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11920 LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 312504 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -11921 KRTAP10-11 keratin associated protein 10-11 201824 1 1 1 0 0 0 1 0 0 0 0.75 1.00 -11922 FOXJ2 forkhead box J2 395360 2 2 2 0 0 2 0 0 0 0 0.75 1.00 -11923 GZF1 GDNF-inducible zinc finger protein 1 470764 3 3 3 1 2 1 0 0 0 0 0.75 1.00 -11924 WNT1 wingless-type MMTV integration site family, member 1 190740 1 1 1 0 0 0 0 0 1 0 0.75 1.00 -11925 AKNAD1 575904 3 2 3 0 1 0 1 0 1 0 0.75 1.00 -11926 TRIM67 tripartite motif-containing 67 343300 3 2 3 3 1 2 0 0 0 0 0.75 1.00 -11927 CBLN1 cerebellin 1 precursor 124404 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -11928 DDB1 damage-specific DNA binding protein 1, 127kDa 780872 5 5 5 2 3 0 2 0 0 0 0.75 1.00 -11929 NDRG1 N-myc downstream regulated gene 1 236184 1 1 1 1 0 1 0 0 0 0 0.75 1.00 -11930 LRP10 low density lipoprotein receptor-related protein 10 484148 5 4 5 1 2 3 0 0 0 0 0.75 1.00 -11931 IL23R interleukin 23 receptor 432184 3 2 3 0 1 0 2 0 0 0 0.75 1.00 -11932 OR9A2 olfactory receptor, family 9, subfamily A, member 2 209888 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11933 TBX20 T-box 20 307272 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -11934 FTSJD1 519008 3 2 3 3 0 2 1 0 0 0 0.75 1.00 -11935 CD99L2 CD99 molecule-like 2 170688 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -11936 IFT122 intraflagellar transport 122 homolog (Chlamydomonas) 891224 6 5 6 4 3 1 2 0 0 0 0.75 1.00 -11937 ZNF642 zinc finger protein 642 358624 2 2 2 0 1 0 1 0 0 0 0.75 1.00 -11938 SMYD2 SET and MYND domain containing 2 284592 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11939 CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon 183820 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -11940 CXorf57 chromosome X open reading frame 57 587776 4 3 4 3 2 0 2 0 0 0 0.75 1.00 -11941 CAPN10 calpain 10 420236 3 2 3 1 1 1 0 0 1 0 0.75 1.00 -11942 TOMM40L translocase of outer mitochondrial membrane 40 homolog (yeast)-like 215712 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11943 POLK polymerase (DNA directed) kappa 597856 3 3 3 2 1 2 0 0 0 0 0.75 1.00 -11944 DENND4C DENN/MADD domain containing 4C 1150016 5 5 4 2 2 1 1 1 0 0 0.75 1.00 -11945 CDK5RAP3 CDK5 regulatory subunit associated protein 3 351888 2 2 2 0 0 1 0 0 1 0 0.75 1.00 -11946 DLL4 delta-like 4 (Drosophila) 439348 2 2 2 0 1 0 0 0 1 0 0.75 1.00 -11947 SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 633248 3 3 3 1 0 1 2 0 0 0 0.75 1.00 -11948 KLRG2 killer cell lectin-like receptor subfamily G, member 2 155188 1 1 1 1 0 0 1 0 0 0 0.75 1.00 -11949 DHPS deoxyhypusine synthase 256704 1 1 1 2 0 1 0 0 0 0 0.75 1.00 -11950 SLC4A10 solute carrier family 4, sodium bicarbonate transporter-like, member 10 747784 5 4 5 3 3 2 0 0 0 0 0.75 1.00 -11951 B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 255584 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -11952 FAM83G family with sequence similarity 83, member G 454888 2 2 2 1 0 1 0 0 1 0 0.75 1.00 -11953 LZTR1 leucine-zipper-like transcription regulator 1 503056 5 4 5 1 3 2 0 0 0 0 0.75 1.00 -11954 SYT12 synaptotagmin XII 276584 2 2 2 0 1 1 0 0 0 0 0.75 1.00 -11955 BPHL biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) 177632 1 1 1 1 0 1 0 0 0 0 0.75 1.00 -11956 RAB33B RAB33B, member RAS oncogene family 156352 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -11957 N4BP2 NEDD4 binding protein 2 1204448 7 6 7 0 1 5 1 0 0 0 0.76 1.00 -11958 AFMID arylformamidase 210296 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -11959 ZNF507 zinc finger protein 507 645568 3 3 3 1 2 1 0 0 0 0 0.76 1.00 -11960 CAMK2G calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 372808 2 2 2 1 1 0 1 0 0 0 0.76 1.00 -11961 USH1C Usher syndrome 1C (autosomal recessive, severe) 637956 8 4 8 1 3 3 1 0 1 0 0.76 1.00 -11962 ING2 inhibitor of growth family, member 2 170984 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -11963 CYP2W1 cytochrome P450, family 2, subfamily W, polypeptide 1 147100 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -11964 LENG8 leukocyte receptor cluster (LRC) member 8 507328 5 5 5 1 4 1 0 0 0 0 0.76 1.00 -11965 BCL2 B-cell CLL/lymphoma 2 149212 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -11966 PSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6 276864 2 1 2 2 0 1 0 0 1 0 0.76 1.00 -11967 USP9X ubiquitin specific peptidase 9, X-linked 1767136 10 7 10 5 1 3 3 0 3 0 0.76 1.00 -11968 TRPM1 transient receptor potential cation channel, subfamily M, member 1 1101184 10 6 10 5 4 2 2 0 0 2 0.76 1.00 -11969 HPSE heparanase 349056 2 2 2 0 1 1 0 0 0 0 0.76 1.00 -11970 GINS3 GINS complex subunit 3 (Psf3 homolog) 148512 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -11971 HOXC5 homeobox C5 130900 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -11972 GPR109A G protein-coupled receptor 109A 245504 2 2 2 0 1 1 0 0 0 0 0.76 1.00 -11973 VDAC1 voltage-dependent anion channel 1 198016 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -11974 NADK NAD kinase 303436 2 2 2 0 1 1 0 0 0 0 0.76 1.00 -11975 OR4K13 olfactory receptor, family 4, subfamily K, member 13 205856 2 1 2 0 1 1 0 0 0 0 0.76 1.00 -11976 PHACTR2 phosphatase and actin regulator 2 441272 2 2 2 4 1 0 1 0 0 0 0.76 1.00 -11977 GLB1 galactosidase, beta 1 469952 3 3 3 1 3 0 0 0 0 0 0.76 1.00 -11978 PGAM2 phosphoglycerate mutase 2 (muscle) 173376 1 1 1 1 1 0 0 0 0 0 0.76 1.00 -11979 COPS7A COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) 191744 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -11980 KIF2A kinesin heavy chain member 2A 492392 3 3 3 0 2 1 0 0 0 0 0.76 1.00 -11981 AGAP3 565236 3 3 3 0 1 0 1 0 1 0 0.76 1.00 -11982 CDHR1 562364 3 3 3 0 0 3 0 0 0 0 0.76 1.00 -11983 AKAP11 A kinase (PRKA) anchor protein 11 1282792 7 6 7 3 2 3 2 0 0 0 0.76 1.00 -11984 PABPC1 poly(A) binding protein, cytoplasmic 1 434308 3 3 3 1 1 0 2 0 0 0 0.76 1.00 -11985 FOXA2 forkhead box A2 235872 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -11986 LPO lactoperoxidase 475776 3 3 3 1 3 0 0 0 0 0 0.76 1.00 -11987 HSDL2 hydroxysteroid dehydrogenase like 2 287160 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -11988 CCDC57 coiled-coil domain containing 57 567256 2 2 2 0 1 0 0 0 1 0 0.76 1.00 -11989 BTNL3 butyrophilin-like 3 211784 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -11990 ANKRD42 ankyrin repeat domain 42 271040 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -11991 RG9MTD3 RNA (guanine-9-) methyltransferase domain containing 3 220056 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -11992 PAX9 paired box 9 210204 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -11993 C14orf179 chromosome 14 open reading frame 179 170688 1 1 1 2 1 0 0 0 0 0 0.76 1.00 -11994 SGCA sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) 246580 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -11995 KCNF1 potassium voltage-gated channel, subfamily F, member 1 291704 2 2 2 0 1 0 1 0 0 0 0.76 1.00 -11996 ZNF566 zinc finger protein 566 285824 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -11997 STAT6 signal transducer and activator of transcription 6, interleukin-4 induced 588672 2 2 2 0 0 1 0 0 1 0 0.76 1.00 -11998 KDM4A 734496 4 4 4 2 2 2 0 0 0 0 0.76 1.00 -11999 TIE1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 736928 5 5 5 2 3 1 0 0 1 0 0.76 1.00 -12000 C1orf174 chromosome 1 open reading frame 174 165956 1 1 1 4 0 1 0 0 0 0 0.76 1.00 -12001 NKX2-5 NK2 transcription factor related, locus 5 (Drosophila) 142072 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -12002 ZW10 ZW10, kinetochore associated, homolog (Drosophila) 538496 2 2 2 1 0 1 1 0 0 0 0.76 1.00 -12003 FAM55A family with sequence similarity 55, member A 276416 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -12004 MTAP methylthioadenosine phosphorylase 192984 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -12005 RABGGTA Rab geranylgeranyltransferase, alpha subunit 391680 2 2 2 0 1 1 0 0 0 0 0.76 1.00 -12006 CD3EAP CD3e molecule, epsilon associated protein 332716 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -12007 CUL4A cullin 4A 467712 2 2 2 3 0 1 0 0 1 0 0.76 1.00 -12008 ZBTB3 zinc finger and BTB domain containing 3 388192 2 2 2 0 0 2 0 0 0 0 0.76 1.00 -12009 TOLLIP toll interacting protein 173856 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -12010 ZNF594 zinc finger protein 594 541772 3 3 3 0 0 3 0 0 0 0 0.76 1.00 -12011 CTSW cathepsin W 262304 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -12012 STK39 serine threonine kinase 39 (STE20/SPS1 homolog, yeast) 342692 3 2 3 2 1 1 1 0 0 0 0.76 1.00 -12013 C9orf119 chromosome 9 open reading frame 119 160636 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -12014 C6orf27 chromosome 6 open reading frame 27 405412 2 2 2 1 0 1 1 0 0 0 0.76 1.00 -12015 ZNF774 zinc finger protein 774 327936 3 2 2 1 2 1 0 0 0 0 0.76 1.00 -12016 ZBTB34 zinc finger and BTB domain containing 34 333956 2 2 2 0 0 1 1 0 0 0 0.76 1.00 -12017 FCGR2C Fc fragment of IgG, low affinity IIc, receptor for (CD32) 171784 1 1 1 3 1 0 0 0 0 0 0.76 1.00 -12018 ZNF688 zinc finger protein 688 169832 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -12019 HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 556416 5 3 5 2 0 2 2 0 1 0 0.76 1.00 -12020 PION 577024 2 2 2 2 1 0 1 0 0 0 0.76 1.00 -12021 B3GNT4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 251440 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -12022 NGDN neuroguidin, EIF4E binding protein 224000 1 1 1 1 1 0 0 0 0 0 0.76 1.00 -12023 OR10AD1 olfactory receptor, family 10, subfamily AD, member 1 214592 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -12024 CACNB3 calcium channel, voltage-dependent, beta 3 subunit 332864 2 2 2 2 2 0 0 0 0 0 0.76 1.00 -12025 CABLES1 Cdk5 and Abl enzyme substrate 1 298928 1 1 1 0 0 0 0 0 1 0 0.76 1.00 -12026 SLC2A8 solute carrier family 2, (facilitated glucose transporter) member 8 207872 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -12027 CPM carboxypeptidase M 305536 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -12028 TSKU tsukushin 205268 1 1 1 3 0 0 1 0 0 0 0.76 1.00 -12029 DHCR24 24-dehydrocholesterol reductase 353444 2 2 2 0 0 2 0 0 0 0 0.76 1.00 -12030 FLRT1 fibronectin leucine rich transmembrane protein 1 450128 4 4 4 2 3 1 0 0 0 0 0.76 1.00 -12031 CCS copper chaperone for superoxide dismutase 186120 1 1 1 2 0 0 1 0 0 0 0.76 1.00 -12032 OR1N1 olfactory receptor, family 1, subfamily N, member 1 210560 1 1 1 2 0 1 0 0 0 0 0.76 1.00 -12033 TSHZ1 teashirt zinc finger homeobox 1 680272 7 5 6 4 2 3 1 0 1 0 0.76 1.00 -12034 HEATR7B2 1072272 10 6 10 3 3 5 2 0 0 0 0.76 1.00 -12035 CCDC105 coiled-coil domain containing 105 247268 2 2 2 1 0 2 0 0 0 0 0.76 1.00 -12036 POLM polymerase (DNA directed), mu 311120 2 2 2 0 1 1 0 0 0 0 0.76 1.00 -12037 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 328384 2 2 2 0 0 1 1 0 0 0 0.76 1.00 -12038 ANKRD52 ankyrin repeat domain 52 733196 6 4 6 2 2 1 2 0 1 0 0.76 1.00 -12039 KLK11 kallikrein-related peptidase 11 198688 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -12040 GUSB glucuronidase, beta 425460 2 2 2 2 1 0 0 0 1 0 0.76 1.00 -12041 ZIC1 Zic family member 1 (odd-paired homolog, Drosophila) 264432 6 4 6 3 3 3 0 0 0 0 0.76 1.00 -12042 GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 237216 1 1 1 2 0 0 1 0 0 0 0.76 1.00 -12043 MTRF1L mitochondrial translational release factor 1-like 234948 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -12044 TRIM3 tripartite motif-containing 3 483532 4 4 4 2 2 1 0 1 0 0 0.76 1.00 -12045 IL1B interleukin 1, beta 186816 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -12046 TRIP6 thyroid hormone receptor interactor 6 271628 1 1 1 1 1 0 0 0 0 0 0.76 1.00 -12047 TMEM146 transmembrane protein 146 555296 3 3 3 6 0 1 2 0 0 0 0.76 1.00 -12048 KBTBD7 kelch repeat and BTB (POZ) domain containing 7 461216 4 3 4 0 2 2 0 0 0 0 0.76 1.00 -12049 NOMO1 NODAL modulator 1 751732 4 4 4 2 1 2 1 0 0 0 0.76 1.00 -12050 TBR1 T-box, brain, 1 362508 3 3 3 2 1 1 1 0 0 0 0.76 1.00 -12051 C15orf27 chromosome 15 open reading frame 27 323856 1 1 1 0 0 0 0 0 1 0 0.76 1.00 -12052 LETM1 leucine zipper-EF-hand containing transmembrane protein 1 490560 3 3 3 0 2 0 1 0 0 0 0.76 1.00 -12053 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 2297176 18 11 18 6 4 9 5 0 0 0 0.76 1.00 -12054 IP6K2 304352 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -12055 EIF3M eukaryotic translation initiation factor 3, subunit M 261856 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -12056 CDC5L CDC5 cell division cycle 5-like (S. pombe) 552864 2 2 2 0 0 0 1 0 1 0 0.76 1.00 -12057 KIAA1543 KIAA1543 527968 2 2 2 1 1 0 0 0 1 0 0.76 1.00 -12058 PRKCH protein kinase C, eta 460768 3 3 3 2 2 0 1 0 0 0 0.76 1.00 -12059 TRIM11 tripartite motif-containing 11 244512 1 1 1 0 0 0 0 0 1 0 0.76 1.00 -12060 DSP desmoplakin 1929512 12 11 12 4 4 3 5 0 0 0 0.76 1.00 -12061 GLG1 golgi apparatus protein 1 794052 4 4 4 2 1 1 1 0 1 0 0.76 1.00 -12062 DIP2A DIP2 disco-interacting protein 2 homolog A (Drosophila) 1031040 8 8 8 2 6 1 1 0 0 0 0.76 1.00 -12063 THSD7A thrombospondin, type I, domain containing 7A 1103096 6 5 6 2 2 0 2 1 1 0 0.76 1.00 -12064 IL17RC interleukin 17 receptor C 501028 3 3 3 0 1 0 1 0 1 0 0.76 1.00 -12065 MTSS1 metastasis suppressor 1 516372 2 2 2 2 0 1 1 0 0 0 0.76 1.00 -12066 NBEAL2 neurobeachin-like 2 1578044 10 10 10 3 6 0 3 0 1 0 0.76 1.00 -12067 IPPK inositol 1,3,4,5,6-pentakisphosphate 2-kinase 339416 2 2 2 1 1 1 0 0 0 0 0.76 1.00 -12068 MAP1S microtubule-associated protein 1S 524904 4 4 4 0 1 1 1 0 1 0 0.76 1.00 -12069 DDX3X DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked 460768 2 2 2 1 0 0 1 0 1 0 0.76 1.00 -12070 NUFIP1 nuclear fragile X mental retardation protein interacting protein 1 342272 2 2 2 0 1 0 1 0 0 0 0.76 1.00 -12071 KCTD19 potassium channel tetramerisation domain containing 19 636692 3 3 3 4 0 1 1 0 1 0 0.76 1.00 -12072 ATXN7 ataxin 7 569576 4 4 4 4 2 2 0 0 0 0 0.76 1.00 -12073 DUOX1 dual oxidase 1 981764 7 7 7 6 4 2 0 0 1 0 0.76 1.00 -12074 ABL1 c-abl oncogene 1, receptor tyrosine kinase 760980 4 4 4 3 1 0 2 0 1 0 0.76 1.00 -12075 ADRA2B adrenergic, alpha-2B-, receptor 273432 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -12076 USP38 ubiquitin specific peptidase 38 709856 4 3 4 5 1 1 2 0 0 0 0.76 1.00 -12077 TSPYL1 TSPY-like 1 275072 2 2 2 0 0 1 1 0 0 0 0.76 1.00 -12078 CEP68 centrosomal protein 68kDa 513856 4 3 4 1 2 1 1 0 0 0 0.76 1.00 -12079 OC90 otoconin 90 302312 1 1 1 3 0 1 0 0 0 0 0.76 1.00 -12080 HOXB1 homeobox B1 204736 1 1 1 1 0 0 0 0 1 0 0.76 1.00 -12081 C4orf17 chromosome 4 open reading frame 17 249088 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -12082 SLC23A1 solute carrier family 23 (nucleobase transporters), member 1 385664 2 2 2 3 0 2 0 0 0 0 0.76 1.00 -12083 CNDP1 carnosine dipeptidase 1 (metallopeptidase M20 family) 352128 3 2 3 1 0 1 2 0 0 0 0.76 1.00 -12084 SLC30A5 solute carrier family 30 (zinc transporter), member 5 529312 2 2 2 4 2 0 0 0 0 0 0.76 1.00 -12085 GFM2 G elongation factor, mitochondrial 2 544320 3 2 3 1 1 1 1 0 0 0 0.76 1.00 -12086 PAOX polyamine oxidase (exo-N4-amino) 257012 1 1 1 1 0 0 0 0 1 0 0.76 1.00 -12087 ZSCAN21 zinc finger and SCAN domain containing 21 316596 2 2 2 0 2 0 0 0 0 0 0.76 1.00 -12088 GOLGA1 golgi autoantigen, golgin subfamily a, 1 513968 3 3 3 0 3 0 0 0 0 0 0.76 1.00 -12089 RCBTB2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 381696 2 2 2 0 0 1 1 0 0 0 0.76 1.00 -12090 CCDC146 coiled-coil domain containing 146 658560 4 4 4 2 1 1 2 0 0 0 0.77 1.00 -12091 BNIPL BCL2/adenovirus E1B 19kD interacting protein like 249536 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12092 ALPK3 alpha-kinase 3 1152656 8 7 8 3 2 4 1 0 1 0 0.77 1.00 -12093 TCIRG1 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 401076 2 2 2 1 1 0 0 0 1 0 0.77 1.00 -12094 PSMD5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 346976 2 2 2 2 0 2 0 0 0 0 0.77 1.00 -12095 NOL11 nucleolar protein 11 499968 2 2 2 1 0 0 1 1 0 0 0.77 1.00 -12096 ZNF554 zinc finger protein 554 353500 3 2 3 0 0 3 0 0 0 0 0.77 1.00 -12097 MAP3K10 mitogen-activated protein kinase kinase kinase 10 439076 3 3 3 1 1 2 0 0 0 0 0.77 1.00 -12098 SNRPA small nuclear ribonucleoprotein polypeptide A 194712 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12099 FCRL6 Fc receptor-like 6 301280 1 1 1 1 0 0 1 0 0 0 0.77 1.00 -12100 RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3 618828 4 4 4 0 1 2 1 0 0 0 0.77 1.00 -12101 POU3F2 POU class 3 homeobox 2 160916 1 1 1 2 1 0 0 0 0 0 0.77 1.00 -12102 OSBPL8 oxysterol binding protein-like 8 618688 2 2 2 3 1 0 1 0 0 0 0.77 1.00 -12103 RGS14 regulator of G-protein signaling 14 360912 2 2 2 0 1 0 0 0 1 0 0.77 1.00 -12104 ANKS3 ankyrin repeat and sterile alpha motif domain containing 3 415548 3 2 3 0 1 2 0 0 0 0 0.77 1.00 -12105 C13orf23 chromosome 13 open reading frame 23 646688 3 3 3 3 1 2 0 0 0 0 0.77 1.00 -12106 NTHL1 nth endonuclease III-like 1 (E. coli) 171080 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12107 TLE6 transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila) 308784 1 1 1 2 0 0 0 0 1 0 0.77 1.00 -12108 LPPR3 182280 2 1 2 1 1 0 0 0 1 0 0.77 1.00 -12109 OFD1 oral-facial-digital syndrome 1 701344 5 3 5 0 2 2 0 0 1 0 0.77 1.00 -12110 OR2AE1 olfactory receptor, family 2, subfamily AE, member 1 218624 1 1 1 2 0 1 0 0 0 0 0.77 1.00 -12111 ARSF arylsulfatase F 406112 3 3 3 5 2 1 0 0 0 0 0.77 1.00 -12112 GFI1B growth factor independent 1B transcription repressor 227808 3 2 3 1 1 2 0 0 0 0 0.77 1.00 -12113 NKX3-2 NK3 homeobox 2 113120 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12114 PEX16 peroxisomal biogenesis factor 16 229512 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12115 SLC30A10 solute carrier family 30, member 10 269128 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -12116 DNAJC10 DnaJ (Hsp40) homolog, subfamily C, member 10 553280 4 2 4 2 1 1 1 0 1 0 0.77 1.00 -12117 SGK196 237328 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12118 ALS2CL ALS2 C-terminal like 624564 3 3 3 2 2 1 0 0 0 0 0.77 1.00 -12119 ITFG2 integrin alpha FG-GAP repeat containing 2 311808 2 2 2 0 0 2 0 0 0 0 0.77 1.00 -12120 FHL1 four and a half LIM domains 1 247072 1 1 1 3 0 1 0 0 0 0 0.77 1.00 -12121 ASB4 ankyrin repeat and SOCS box-containing 4 307552 2 2 2 1 0 2 0 0 0 0 0.77 1.00 -12122 GPNMB glycoprotein (transmembrane) nmb 394912 2 2 2 5 1 1 0 0 0 0 0.77 1.00 -12123 DIS3L2 DIS3 mitotic control homolog (S. cerevisiae)-like 2 580556 6 4 6 2 2 3 1 0 0 0 0.77 1.00 -12124 ZNF606 zinc finger protein 606 538272 4 3 4 1 2 2 0 0 0 0 0.77 1.00 -12125 OR51G1 olfactory receptor, family 51, subfamily G, member 1 217280 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12126 NKD2 naked cuticle homolog 2 (Drosophila) 155784 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12127 NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 467936 3 2 3 0 1 0 1 0 1 0 0.77 1.00 -12128 CTTNBP2NL CTTNBP2 N-terminal like 433664 2 2 2 3 1 1 0 0 0 0 0.77 1.00 -12129 SDR9C7 214592 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -12130 SLC6A18 solute carrier family 6, member 18 413616 3 2 3 1 1 0 1 0 1 0 0.77 1.00 -12131 FBXO6 F-box protein 6 202048 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12132 GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide 201208 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -12133 AKT1 v-akt murine thymoma viral oncogene homolog 1 330680 2 2 2 1 1 0 1 0 0 0 0.77 1.00 -12134 FCGBP Fc fragment of IgG binding protein 2497860 16 15 15 16 3 5 5 1 2 0 0.77 1.00 -12135 AKAP8 A kinase (PRKA) anchor protein 8 450016 3 3 3 2 1 2 0 0 0 0 0.77 1.00 -12136 DGKG diacylglycerol kinase, gamma 90kDa 553728 3 3 3 5 1 0 2 0 0 0 0.77 1.00 -12137 PGS1 phosphatidylglycerophosphate synthase 1 343392 1 1 1 0 0 0 0 1 0 0 0.77 1.00 -12138 PBX1 pre-B-cell leukemia homeobox 1 271176 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -12139 ITFG1 integrin alpha FG-GAP repeat containing 1 411712 2 2 2 0 1 0 1 0 0 0 0.77 1.00 -12140 SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 310128 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12141 MCOLN1 mucolipin 1 384804 4 4 4 1 3 1 0 0 0 0 0.77 1.00 -12142 ARRDC2 arrestin domain containing 2 234836 1 1 1 1 0 0 1 0 0 0 0.77 1.00 -12143 RPL5 ribosomal protein L5 206416 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -12144 PRMT1 protein arginine methyltransferase 1 259840 1 1 1 0 0 0 0 0 1 0 0.77 1.00 -12145 HDAC6 histone deacetylase 6 808376 7 6 7 2 4 2 1 0 0 0 0.77 1.00 -12146 UBAC2 UBA domain containing 2 265476 1 1 1 1 1 0 0 0 0 0 0.77 1.00 -12147 PPME1 protein phosphatase methylesterase 1 262816 2 1 2 0 2 0 0 0 0 0 0.77 1.00 -12148 QPRT quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) 178512 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12149 MTERFD3 MTERF domain containing 3 260288 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12150 PMPCB peptidase (mitochondrial processing) beta 340928 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -12151 PSG5 pregnancy specific beta-1-glycoprotein 5 230272 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12152 ADAMTSL4 ADAMTS-like 4 674660 4 4 3 0 1 1 1 0 1 0 0.77 1.00 -12153 ATL2 391160 2 2 2 0 0 1 0 0 1 0 0.77 1.00 -12154 TMEM19 transmembrane protein 19 231840 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -12155 STARD10 StAR-related lipid transfer (START) domain containing 10 192612 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12156 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 1110396 6 5 6 2 1 3 1 0 1 0 0.77 1.00 -12157 ASAM 257600 1 1 1 2 1 0 0 0 0 0 0.77 1.00 -12158 C20orf72 chromosome 20 open reading frame 72 235424 2 1 2 0 0 1 1 0 0 0 0.77 1.00 -12159 ZNF589 zinc finger protein 589 248780 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -12160 MYH7 myosin, heavy chain 7, cardiac muscle, beta 1325440 12 10 11 8 5 3 3 0 1 0 0.77 1.00 -12161 ASNS asparagine synthetase 387520 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12162 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 454132 3 3 3 1 0 2 1 0 0 0 0.77 1.00 -12163 SEC31A SEC31 homolog A (S. cerevisiae) 843808 2 2 2 3 0 1 0 0 1 0 0.77 1.00 -12164 VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae) 275868 2 2 2 0 1 1 0 0 0 0 0.77 1.00 -12165 ACOXL acyl-Coenzyme A oxidase-like 359744 2 2 2 2 0 2 0 0 0 0 0.77 1.00 -12166 THBD thrombomodulin 235676 2 2 2 1 2 0 0 0 0 0 0.77 1.00 -12167 ELMO2 engulfment and cell motility 2 502432 3 3 3 0 2 1 0 0 0 0 0.77 1.00 -12168 RNF8 ring finger protein 8 344024 2 1 2 0 0 0 1 0 1 0 0.77 1.00 -12169 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 402164 2 2 2 1 2 0 0 0 0 0 0.77 1.00 -12170 CLCN6 chloride channel 6 606396 5 4 5 2 4 1 0 0 0 0 0.77 1.00 -12171 GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase) 276640 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12172 GGN gametogenetin 298316 4 4 4 1 4 0 0 0 0 0 0.77 1.00 -12173 C14orf145 chromosome 14 open reading frame 145 754264 5 5 5 2 3 0 1 0 1 0 0.77 1.00 -12174 MLL3 myeloid/lymphoid or mixed-lineage leukemia 3 3316320 16 12 16 9 5 5 5 0 1 0 0.77 1.00 -12175 NCAM1 neural cell adhesion molecule 1 601352 6 4 5 4 4 2 0 0 0 0 0.77 1.00 -12176 FGR Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog 365880 2 2 2 1 2 0 0 0 0 0 0.77 1.00 -12177 DQX1 DEAQ box polypeptide 1 (RNA-dependent ATPase) 414400 1 1 1 2 0 0 0 0 1 0 0.77 1.00 -12178 C20orf117 chromosome 20 open reading frame 117 661136 5 4 5 2 2 3 0 0 0 0 0.77 1.00 -12179 MEI1 meiosis inhibitor 1 861388 7 4 7 0 2 1 4 0 0 0 0.77 1.00 -12180 POLR1C polymerase (RNA) I polypeptide C, 30kDa 265432 2 1 2 0 1 1 0 0 0 0 0.77 1.00 -12181 WEE2 WEE1 homolog 2 (S. pombe) 392448 2 2 2 3 0 2 0 0 0 0 0.77 1.00 -12182 USP22 ubiquitin specific peptidase 22 331668 2 2 2 0 2 0 0 0 0 0 0.77 1.00 -12183 NAAA 222068 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -12184 DCAF12 313068 2 2 2 0 0 2 0 0 0 0 0.77 1.00 -12185 SAMM50 sorting and assembly machinery component 50 homolog (S. cerevisiae) 327180 2 2 2 2 0 1 1 0 0 0 0.77 1.00 -12186 CLGN calmegin 423136 2 2 2 0 1 1 0 0 0 0 0.77 1.00 -12187 INTS10 integrator complex subunit 10 492888 2 2 2 0 1 0 0 0 1 0 0.77 1.00 -12188 SLC8A2 solute carrier family 8 (sodium-calcium exchanger), member 2 471456 4 4 4 0 2 2 0 0 0 0 0.77 1.00 -12189 SOCS4 suppressor of cytokine signaling 4 297248 1 1 1 1 0 0 0 0 1 0 0.77 1.00 -12190 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 303520 2 2 2 1 1 1 0 0 0 0 0.77 1.00 -12191 PHF15 PHD finger protein 15 522560 3 3 3 2 1 1 1 0 0 0 0.77 1.00 -12192 OR10G8 olfactory receptor, family 10, subfamily G, member 8 210560 1 1 1 1 0 0 1 0 0 0 0.77 1.00 -12193 MLLT6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 624888 3 3 3 1 0 2 0 0 1 0 0.77 1.00 -12194 CHEK2 CHK2 checkpoint homolog (S. pombe) 355516 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -12195 GPR77 G protein-coupled receptor 77 206780 2 2 2 1 2 0 0 0 0 0 0.77 1.00 -12196 VCP valosin-containing protein 552832 2 2 2 2 1 0 0 0 1 0 0.77 1.00 -12197 ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 606176 4 3 4 1 1 2 1 0 0 0 0.77 1.00 -12198 SP100 SP100 nuclear antigen 743904 4 4 4 0 1 1 2 0 0 0 0.77 1.00 -12199 GFRAL GDNF family receptor alpha like 273504 1 1 1 1 0 0 1 0 0 0 0.77 1.00 -12200 UEVLD UEV and lactate/malate dehyrogenase domains 327936 1 1 1 0 0 0 0 0 1 0 0.77 1.00 -12201 B4GALT2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 231924 3 2 3 0 3 0 0 0 0 0 0.77 1.00 -12202 WDR89 WD repeat domain 89 261632 2 1 2 1 0 2 0 0 0 0 0.77 1.00 -12203 ATXN7L3 ataxin 7-like 3 246764 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -12204 OR52I2 olfactory receptor, family 52, subfamily I, member 2 236768 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12205 GPAA1 glycosylphosphatidylinositol anchor attachment protein 1 homolog (yeast) 383208 3 3 3 0 2 1 0 0 0 0 0.77 1.00 -12206 C7orf43 chromosome 7 open reading frame 43 294816 1 1 1 2 1 0 0 0 0 0 0.77 1.00 -12207 AEBP1 AE binding protein 1 724332 5 5 5 3 2 1 2 0 0 0 0.77 1.00 -12208 GDI2 GDP dissociation inhibitor 2 305452 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -12209 PECI peroxisomal D3,D2-enoyl-CoA isomerase 267260 1 1 1 1 0 0 1 0 0 0 0.77 1.00 -12210 FOXA3 forkhead box A3 227328 1 1 1 1 1 0 0 0 0 0 0.77 1.00 -12211 SLC38A3 solute carrier family 38, member 3 330496 2 2 2 1 1 0 1 0 0 0 0.77 1.00 -12212 CPSF1 cleavage and polyadenylation specific factor 1, 160kDa 790504 5 5 5 0 2 1 0 0 2 0 0.77 1.00 -12213 TSC22D4 TSC22 domain family, member 4 224240 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -12214 RGP1 RGP1 retrograde golgi transport homolog (S. cerevisiae) 283896 2 2 2 0 1 1 0 0 0 0 0.77 1.00 -12215 CYB5RL 211608 1 1 1 1 1 0 0 0 0 0 0.77 1.00 -12216 AARS alanyl-tRNA synthetase 669088 5 5 5 2 3 2 0 0 0 0 0.77 1.00 -12217 ITPK1 inositol 1,3,4-triphosphate 5/6 kinase 240212 2 2 2 1 2 0 0 0 0 0 0.77 1.00 -12218 DEK DEK oncogene (DNA binding) 261496 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12219 SLC6A8 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 341072 1 1 1 1 0 0 1 0 0 0 0.77 1.00 -12220 SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 342944 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12221 UBFD1 ubiquitin family domain containing 1 175140 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -12222 RALY RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) 199668 1 1 1 2 0 0 1 0 0 0 0.77 1.00 -12223 SEC16A SEC16 homolog A (S. cerevisiae) 1491956 11 10 11 3 2 6 2 0 1 0 0.77 1.00 -12224 MIOS 597632 3 3 3 1 0 1 1 0 1 0 0.77 1.00 -12225 MTCH2 mitochondrial carrier homolog 2 (C. elegans) 209104 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -12226 EIF3B eukaryotic translation initiation factor 3, subunit B 451136 3 3 3 0 2 0 1 0 0 0 0.77 1.00 -12227 EHD4 EH-domain containing 4 352036 3 3 3 3 2 0 1 0 0 0 0.78 1.00 -12228 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 517440 2 2 2 1 2 0 0 0 0 0 0.78 1.00 -12229 SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 496540 2 2 2 0 0 0 1 1 0 0 0.78 1.00 -12230 FGB fibrinogen beta chain 328920 2 2 2 0 1 1 0 0 0 0 0.78 1.00 -12231 GPR132 G protein-coupled receptor 132 257152 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -12232 RBBP5 retinoblastoma binding protein 5 361152 2 2 2 2 1 0 1 0 0 0 0.78 1.00 -12233 RELL1 RELT-like 1 175532 1 1 1 2 0 0 1 0 0 0 0.78 1.00 -12234 ZNF689 zinc finger protein 689 318124 2 2 2 0 1 0 1 0 0 0 0.78 1.00 -12235 ACCN4 amiloride-sensitive cation channel 4, pituitary 405420 2 2 2 1 0 1 1 0 0 0 0.78 1.00 -12236 TRIM14 tripartite motif-containing 14 232680 1 1 1 0 0 0 0 0 1 0 0.78 1.00 -12237 KIAA0391 KIAA0391 398720 2 2 2 0 0 1 1 0 0 0 0.78 1.00 -12238 TMEM30B transmembrane protein 30B 133728 1 1 1 0 0 1 0 0 0 0 0.78 1.00 -12239 SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 196896 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12240 SLC38A7 solute carrier family 38, member 7 306768 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -12241 WDR73 WD repeat domain 73 236872 1 1 1 0 0 1 0 0 0 0 0.78 1.00 -12242 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 315840 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12243 CD97 CD97 molecule 562804 5 4 5 1 2 2 0 0 1 0 0.78 1.00 -12244 BRMS1 breast cancer metastasis suppressor 1 203104 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12245 HTATSF1 HIV-1 Tat specific factor 1 516096 2 2 2 3 1 1 0 0 0 0 0.78 1.00 -12246 CCNI cyclin I 259392 2 1 2 0 0 2 0 0 0 0 0.78 1.00 -12247 PPL periplakin 1150108 6 6 6 6 3 1 0 0 2 0 0.78 1.00 -12248 TBPL2 TATA box binding protein like 2 246008 1 1 1 0 0 1 0 0 0 0 0.78 1.00 -12249 PHLPP1 800288 5 5 5 1 1 2 1 0 1 0 0.78 1.00 -12250 C2orf60 chromosome 2 open reading frame 60 219520 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12251 CAMK2B calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 382180 2 2 2 2 1 0 1 0 0 0 0.78 1.00 -12252 SMC1B structural maintenance of chromosomes 1B 850952 6 5 6 0 1 2 3 0 0 0 0.78 1.00 -12253 C1orf87 chromosome 1 open reading frame 87 377440 3 2 3 3 1 2 0 0 0 0 0.78 1.00 -12254 PSAP prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) 360704 2 2 2 1 2 0 0 0 0 0 0.78 1.00 -12255 DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 343836 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -12256 BGN biglycan 249072 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12257 RASD2 RASD family, member 2 179032 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12258 WFS1 Wolfram syndrome 1 (wolframin) 502644 1 1 1 3 0 0 0 0 1 0 0.78 1.00 -12259 SPEF1 sperm flagellar 1 163940 1 1 1 1 0 1 0 0 0 0 0.78 1.00 -12260 EIF3L 384104 2 2 2 1 1 1 0 0 0 0 0.78 1.00 -12261 PPP2R2A protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform 310016 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -12262 PTGIR prostaglandin I2 (prostacyclin) receptor (IP) 155296 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12263 STOM stomatin 191640 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12264 ANO10 450048 2 2 2 1 0 2 0 0 0 0 0.78 1.00 -12265 PIM2 pim-2 oncogene 203072 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12266 ZNF828 zinc finger protein 828 547232 3 2 3 2 1 2 0 0 0 0 0.78 1.00 -12267 DTX3L deltex 3-like (Drosophila) 499408 3 3 3 0 1 2 0 0 0 0 0.78 1.00 -12268 SIN3A SIN3 homolog A, transcription regulator (yeast) 873880 10 4 10 6 2 5 2 0 1 0 0.78 1.00 -12269 FBXO44 F-box protein 44 182756 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12270 CASR calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism) 732704 7 4 7 6 3 3 1 0 0 0 0.78 1.00 -12271 C18orf1 chromosome 18 open reading frame 1 221144 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12272 CACNA1B calcium channel, voltage-dependent, N type, alpha 1B subunit 1305372 11 10 11 4 7 2 2 0 0 0 0.78 1.00 -12273 MCAT malonyl CoA:ACP acyltransferase (mitochondrial) 203672 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12274 PTPN21 protein tyrosine phosphatase, non-receptor type 21 743904 8 6 8 5 3 2 1 0 0 2 0.78 1.00 -12275 FBXO7 F-box protein 7 337036 3 2 3 3 1 1 1 0 0 0 0.78 1.00 -12276 WDR5 WD repeat domain 5 236516 1 1 1 1 0 1 0 0 0 0 0.78 1.00 -12277 C17orf74 chromosome 17 open reading frame 74 326172 3 2 3 0 1 0 1 0 1 0 0.78 1.00 -12278 SPATA2 spermatogenesis associated 2 351904 3 3 3 1 3 0 0 0 0 0 0.78 1.00 -12279 AIFM1 apoptosis-inducing factor, mitochondrion-associated, 1 442632 2 2 2 2 0 2 0 0 0 0 0.78 1.00 -12280 PRB2 proline-rich protein BstNI subfamily 2 271040 1 1 1 2 0 1 0 0 0 0 0.78 1.00 -12281 IKBIP 411572 2 2 2 0 0 1 1 0 0 0 0.78 1.00 -12282 TGFBI transforming growth factor, beta-induced, 68kDa 440024 1 1 1 1 0 0 0 0 1 0 0.78 1.00 -12283 NR5A2 nuclear receptor subfamily 5, group A, member 2 370576 4 2 4 1 1 2 1 0 0 0 0.78 1.00 -12284 CPT2 carnitine palmitoyltransferase II 414848 2 2 2 1 0 1 1 0 0 0 0.78 1.00 -12285 LINS1 lines homolog 1 (Drosophila) 514752 1 1 1 0 0 0 0 0 1 0 0.78 1.00 -12286 ANKHD1-EIF4EBP3 ANKHD1-EIF4EBP3 1753400 10 8 10 4 2 5 2 0 1 0 0.78 1.00 -12287 LDLRAP1 low density lipoprotein receptor adaptor protein 1 195104 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12288 C10orf26 chromosome 10 open reading frame 26 225532 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12289 SARS seryl-tRNA synthetase 355936 2 2 2 1 1 0 1 0 0 0 0.78 1.00 -12290 RUFY2 RUN and FYVE domain containing 2 463636 1 1 1 0 0 0 0 0 1 0 0.78 1.00 -12291 C1orf161 chromosome 1 open reading frame 161 249312 1 1 1 2 1 0 0 0 0 0 0.78 1.00 -12292 PCDHGA4 protocadherin gamma subfamily A, 4 623980 5 5 5 0 3 2 0 0 0 0 0.78 1.00 -12293 CFI complement factor I 404096 2 2 2 5 0 1 1 0 0 0 0.78 1.00 -12294 MX2 myxovirus (influenza virus) resistance 2 (mouse) 488432 3 3 3 3 1 0 2 0 0 0 0.78 1.00 -12295 GNL2 guanine nucleotide binding protein-like 2 (nucleolar) 506240 3 2 3 3 1 1 0 0 1 0 0.78 1.00 -12296 TLR10 toll-like receptor 10 546560 4 2 4 3 0 3 1 0 0 0 0.78 1.00 -12297 ITIH4 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 646380 3 3 3 0 2 1 0 0 0 0 0.78 1.00 -12298 CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 226188 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12299 MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 493472 8 3 8 1 3 3 2 0 0 0 0.78 1.00 -12300 PHYH phytanoyl-CoA 2-hydroxylase 218176 2 1 2 2 1 1 0 0 0 0 0.78 1.00 -12301 CBARA1 calcium binding atopy-related autoantigen 1 315832 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12302 LIPE lipase, hormone-sensitive 667096 4 4 4 2 4 0 0 0 0 0 0.78 1.00 -12303 KDM1B 411488 3 2 3 0 2 1 0 0 0 0 0.78 1.00 -12304 ZDHHC5 zinc finger, DHHC-type containing 5 491008 3 3 3 0 0 2 1 0 0 0 0.78 1.00 -12305 PASK PAS domain containing serine/threonine kinase 904960 7 6 7 0 4 3 0 0 0 0 0.78 1.00 -12306 ACHE acetylcholinesterase (Yt blood group) 376896 2 2 2 2 0 0 1 0 1 0 0.78 1.00 -12307 DEPDC1B DEP domain containing 1B 354368 1 1 1 1 0 1 0 0 0 0 0.78 1.00 -12308 RAP2B RAP2B, member of RAS oncogene family 107744 1 1 1 0 0 1 0 0 0 0 0.78 1.00 -12309 DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 334880 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -12310 EXTL1 exostoses (multiple)-like 1 425668 3 2 3 1 2 1 0 0 0 0 0.78 1.00 -12311 BCL2L13 BCL2-like 13 (apoptosis facilitator) 331044 2 2 2 0 1 0 1 0 0 0 0.78 1.00 -12312 MCOLN2 mucolipin 2 393568 2 2 2 0 2 0 0 0 0 0 0.78 1.00 -12313 DNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 12 262080 2 2 2 0 1 1 0 0 0 0 0.78 1.00 -12314 GALNT8 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 438592 2 2 2 2 1 0 1 0 0 0 0.78 1.00 -12315 ZCCHC7 zinc finger, CCHC domain containing 7 372736 2 2 2 0 0 2 0 0 0 0 0.78 1.00 -12316 PPP1R12C protein phosphatase 1, regulatory (inhibitor) subunit 12C 417032 3 3 3 1 2 1 0 0 0 0 0.78 1.00 -12317 C2orf55 chromosome 2 open reading frame 55 419280 2 2 2 0 0 0 0 0 2 0 0.78 1.00 -12318 IK IK cytokine, down-regulator of HLA II 376168 2 2 2 0 0 1 1 0 0 0 0.78 1.00 -12319 ERAP2 endoplasmic reticulum aminopeptidase 2 661920 5 3 5 1 1 3 1 0 0 0 0.78 1.00 -12320 ACD adrenocortical dysplasia homolog (mouse) 334236 1 1 1 0 0 0 0 0 1 0 0.78 1.00 -12321 TECR 200228 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12322 AGAP7 266060 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12323 TDP1 tyrosyl-DNA phosphodiesterase 1 422688 2 2 2 2 1 1 0 0 0 0 0.78 1.00 -12324 SF3A2 splicing factor 3a, subunit 2, 66kDa 177708 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12325 NEK10 NIMA (never in mitosis gene a)- related kinase 10 480568 4 2 4 0 0 2 1 0 1 0 0.78 1.00 -12326 TST thiosulfate sulfurtransferase (rhodanese) 142996 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12327 LIMS1 LIM and senescent cell antigen-like domains 1 199892 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -12328 MKNK1 MAP kinase interacting serine/threonine kinase 1 290912 1 1 1 1 0 0 1 0 0 0 0.78 1.00 -12329 NUP160 nucleoporin 160kDa 991284 4 4 4 4 1 2 0 0 1 0 0.78 1.00 -12330 FAM53A family with sequence similarity 53, member A 181020 1 1 1 0 0 1 0 0 0 0 0.78 1.00 -12331 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 570752 4 3 4 1 2 1 0 0 1 0 0.78 1.00 -12332 FADS6 fatty acid desaturase domain family, member 6 215480 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -12333 ZNF792 zinc finger protein 792 421552 4 3 4 0 2 2 0 0 0 0 0.78 1.00 -12334 C1orf85 chromosome 1 open reading frame 85 278744 1 1 1 0 0 0 0 0 1 0 0.78 1.00 -12335 SIPA1L2 signal-induced proliferation-associated 1 like 2 1175832 10 6 10 4 2 3 2 0 1 2 0.79 1.00 -12336 RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 406152 2 2 2 0 0 0 1 0 1 0 0.79 1.00 -12337 ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 277984 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12338 CLPB ClpB caseinolytic peptidase B homolog (E. coli) 471352 2 2 2 0 0 2 0 0 0 0 0.79 1.00 -12339 SMURF1 SMAD specific E3 ubiquitin protein ligase 1 510292 3 3 3 2 0 3 0 0 0 0 0.79 1.00 -12340 AMFR autocrine motility factor receptor 387296 3 3 3 1 2 1 0 0 0 0 0.79 1.00 -12341 SPNS2 spinster homolog 2 (Drosophila) 294644 2 2 2 1 1 0 1 0 0 0 0.79 1.00 -12342 CARM1 coactivator-associated arginine methyltransferase 1 366200 2 2 2 0 1 0 0 1 0 0 0.79 1.00 -12343 SERTAD2 SERTA domain containing 2 212576 1 1 1 1 1 0 0 0 0 0 0.79 1.00 -12344 PIGA phosphatidylinositol glycan anchor biosynthesis, class A (paroxysmal nocturnal hemoglobinuria) 330400 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -12345 RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 287224 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12346 TBC1D9 TBC1 domain family, member 9 (with GRAM domain) 863728 6 6 6 1 2 2 2 0 0 0 0.79 1.00 -12347 KRT6B keratin 6B 387744 2 2 2 1 1 1 0 0 0 0 0.79 1.00 -12348 FNDC8 fibronectin type III domain containing 8 221984 1 1 1 2 0 1 0 0 0 0 0.79 1.00 -12349 FH fumarate hydratase 324880 1 1 1 4 0 0 1 0 0 0 0.79 1.00 -12350 CES7 carboxylesterase 7 398720 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12351 INO80B 181216 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -12352 PRAMEF14 PRAME family member 14 192472 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12353 ICAM2 intercellular adhesion molecule 2 188972 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12354 TOP3B topoisomerase (DNA) III beta 508648 3 3 3 1 0 1 2 0 0 0 0.79 1.00 -12355 ZNF608 zinc finger protein 608 1016988 5 4 5 3 1 2 1 0 1 0 0.79 1.00 -12356 MYCN v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) 210924 3 2 3 0 2 1 0 0 0 0 0.79 1.00 -12357 ARID5A AT rich interactive domain 5A (MRF1-like) 335720 1 1 1 0 0 0 0 0 1 0 0.79 1.00 -12358 ARID4B AT rich interactive domain 4B (RBP1-like) 902944 4 4 4 1 1 2 1 0 0 0 0.79 1.00 -12359 MAP2K2 mitogen-activated protein kinase kinase 2 211048 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -12360 PIK3R6 phosphoinositide-3-kinase, regulatory subunit 6 499468 6 4 6 0 3 1 2 0 0 0 0.79 1.00 -12361 LRRC61 leucine rich repeat containing 61 162512 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12362 TYMP thymidine phosphorylase 165424 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12363 GATAD2A GATA zinc finger domain containing 2A 418012 2 2 2 0 1 0 0 0 1 0 0.79 1.00 -12364 HLA-E major histocompatibility complex, class I, E 173012 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -12365 LRRC6 leucine rich repeat containing 6 324576 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -12366 TMPRSS9 transmembrane protease, serine 9 621124 3 3 3 0 1 0 1 0 1 0 0.79 1.00 -12367 NAP1L1 nucleosome assembly protein 1-like 1 275968 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12368 ZBTB37 zinc finger and BTB domain containing 37 245056 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12369 ABCG4 ATP-binding cassette, sub-family G (WHITE), member 4 447328 3 3 3 3 2 0 1 0 0 0 0.79 1.00 -12370 ENG endoglin (Osler-Rendu-Weber syndrome 1) 419916 2 2 2 1 0 1 0 0 1 0 0.79 1.00 -12371 DPEP1 dipeptidase 1 (renal) 219212 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -12372 LYSMD4 LysM, putative peptidoglycan-binding, domain containing 4 202664 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -12373 CPSF3 cleavage and polyadenylation specific factor 3, 73kDa 476448 2 2 2 3 0 1 1 0 0 0 0.79 1.00 -12374 HNRNPUL2 439096 2 2 2 0 0 0 2 0 0 0 0.79 1.00 -12375 RNF144A ring finger protein 144A 203168 1 1 1 1 0 0 1 0 0 0 0.79 1.00 -12376 SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 203840 1 1 1 1 0 0 1 0 0 0 0.79 1.00 -12377 DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 698096 5 3 5 2 0 2 1 0 2 0 0.79 1.00 -12378 USP5 ubiquitin specific peptidase 5 (isopeptidase T) 595168 4 4 4 2 2 2 0 0 0 0 0.79 1.00 -12379 ADRBK2 adrenergic, beta, receptor kinase 2 455616 2 2 2 0 1 1 0 0 0 0 0.79 1.00 -12380 DHDDS dehydrodolichyl diphosphate synthase 230272 1 1 1 1 1 0 0 0 0 0 0.79 1.00 -12381 CCDC155 357824 1 1 1 1 1 0 0 0 0 0 0.79 1.00 -12382 SLC26A8 solute carrier family 26, member 8 669536 4 4 4 2 3 1 0 0 0 0 0.79 1.00 -12383 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit 391160 3 3 3 1 3 0 0 0 0 0 0.79 1.00 -12384 AMD1 adenosylmethionine decarboxylase 1 233184 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12385 HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 257908 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12386 LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 447888 2 2 2 1 1 0 0 0 1 0 0.79 1.00 -12387 TUBGCP2 tubulin, gamma complex associated protein 2 564060 3 3 3 3 1 1 1 0 0 0 0.79 1.00 -12388 MFAP3 microfibrillar-associated protein 3 245728 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12389 POLG polymerase (DNA directed), gamma 782616 5 5 5 4 3 1 1 0 0 0 0.79 1.00 -12390 PSKH2 protein serine kinase H2 248976 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -12391 ARMCX2 armadillo repeat containing, X-linked 2 426272 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -12392 CHD5 chromodomain helicase DNA binding protein 5 1217516 13 11 12 4 9 2 2 0 0 0 0.79 1.00 -12393 TRUB1 TruB pseudouridine (psi) synthase homolog 1 (E. coli) 224640 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12394 CRELD2 cysteine-rich with EGF-like domains 2 197820 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12395 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 507808 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -12396 TRIM16 tripartite motif-containing 16 372836 1 1 1 3 0 1 0 0 0 0 0.79 1.00 -12397 SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 242648 2 2 2 1 2 0 0 0 0 0 0.79 1.00 -12398 GPR114 G protein-coupled receptor 114 365344 2 2 2 3 0 2 0 0 0 0 0.79 1.00 -12399 DGKE diacylglycerol kinase, epsilon 64kDa 391216 3 2 3 0 0 1 1 0 1 0 0.79 1.00 -12400 ITGAE integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) 783488 7 5 7 4 2 3 1 0 1 0 0.79 1.00 -12401 KRT24 keratin 24 360640 3 2 3 1 1 2 0 0 0 0 0.79 1.00 -12402 BRCA1 breast cancer 1, early onset 1282120 6 6 6 1 1 3 1 0 1 0 0.79 1.00 -12403 WDR43 WD repeat domain 43 436240 1 1 1 2 0 0 1 0 0 0 0.79 1.00 -12404 RTN3 reticulon 3 707980 4 3 4 0 0 3 0 0 1 0 0.79 1.00 -12405 TMEM175 transmembrane protein 175 291452 2 2 2 0 0 1 1 0 0 0 0.79 1.00 -12406 CNTNAP1 contactin associated protein 1 949368 7 7 7 4 4 1 2 0 0 0 0.79 1.00 -12407 NBN nibrin 521696 2 2 2 0 0 0 2 0 0 0 0.79 1.00 -12408 DLD dihydrolipoamide dehydrogenase 355264 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12409 CADM4 cell adhesion molecule 4 252728 1 1 1 2 1 0 0 0 0 0 0.79 1.00 -12410 PDLIM3 PDZ and LIM domain 3 252448 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12411 EBI3 Epstein-Barr virus induced gene 3 153076 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12412 SAPS3 SAPS domain family, member 3 551488 1 1 1 0 0 0 0 0 1 0 0.79 1.00 -12413 NKRF NFKB repressing factor 468384 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -12414 ARHGEF15 Rho guanine nucleotide exchange factor (GEF) 15 571620 4 4 4 1 2 2 0 0 0 0 0.79 1.00 -12415 DOC2A double C2-like domains, alpha 251400 2 2 2 1 2 0 0 0 0 0 0.79 1.00 -12416 MPI mannose phosphate isomerase 292096 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12417 JMJD7-PLA2G4B 690988 4 4 4 0 1 1 1 0 1 0 0.79 1.00 -12418 DDX53 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 424376 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -12419 TSEN54 tRNA splicing endonuclease 54 homolog (S. cerevisiae) 231912 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12420 GPR149 G protein-coupled receptor 149 495488 4 3 4 2 2 2 0 0 0 0 0.79 1.00 -12421 KPRP keratinocyte proline-rich protein 390656 3 3 3 7 2 1 0 0 0 0 0.79 1.00 -12422 PRKACB protein kinase, cAMP-dependent, catalytic, beta 291200 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12423 EXOC5 exocyst complex component 5 426472 2 2 2 1 1 1 0 0 0 0 0.79 1.00 -12424 KLHL10 kelch-like 10 (Drosophila) 411544 2 2 2 3 2 0 0 0 0 0 0.79 1.00 -12425 GPR15 G protein-coupled receptor 15 243488 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12426 ALPI alkaline phosphatase, intestinal 299180 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -12427 MFSD2A 355256 3 2 3 0 1 2 0 0 0 0 0.79 1.00 -12428 COL7A1 collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive) 2004260 14 11 14 4 6 6 0 0 2 0 0.79 1.00 -12429 WNK1 WNK lysine deficient protein kinase 1 1861552 10 8 10 4 2 5 1 0 2 0 0.79 1.00 -12430 BTBD9 BTB (POZ) domain containing 9 418880 2 2 2 2 0 1 1 0 0 0 0.79 1.00 -12431 COMP cartilage oligomeric matrix protein 421064 2 2 2 1 0 1 0 0 1 0 0.79 1.00 -12432 MAP6 microtubule-associated protein 6 366212 2 2 2 1 1 1 0 0 0 0 0.79 1.00 -12433 QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 286720 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12434 VGLL3 vestigial like 3 (Drosophila) 223328 1 1 1 1 1 0 0 0 0 0 0.79 1.00 -12435 PPAPDC3 phosphatidic acid phosphatase type 2 domain containing 3 164332 1 1 1 1 1 0 0 0 0 0 0.79 1.00 -12436 ASB2 ankyrin repeat and SOCS box-containing 2 356468 3 2 3 3 0 1 2 0 0 0 0.79 1.00 -12437 ZNF74 zinc finger protein 74 397264 3 3 3 1 2 1 0 0 0 0 0.79 1.00 -12438 HK3 hexokinase 3 (white cell) 582508 5 5 5 1 1 4 0 0 0 0 0.79 1.00 -12439 KIFC3 kinesin family member C3 497936 3 3 3 0 1 1 1 0 0 0 0.79 1.00 -12440 TRIM15 tripartite motif-containing 15 184800 1 1 1 1 1 0 0 0 0 0 0.79 1.00 -12441 CCNF cyclin F 535752 2 2 2 0 0 1 1 0 0 0 0.79 1.00 -12442 NME1-NME2 NME1-NME2 186368 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12443 STYK1 serine/threonine/tyrosine kinase 1 292320 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12444 RASGEF1A RasGEF domain family, member 1A 298452 2 2 2 1 2 0 0 0 0 0 0.79 1.00 -12445 MORC4 MORC family CW-type zinc finger 4 608216 4 3 4 0 2 2 0 0 0 0 0.79 1.00 -12446 G6PC2 glucose-6-phosphatase, catalytic, 2 243712 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12447 USP12 ubiquitin specific peptidase 12 252728 1 1 1 1 0 0 1 0 0 0 0.79 1.00 -12448 F2R coagulation factor II (thrombin) receptor 267456 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12449 EPHB4 EPH receptor B4 612936 5 4 5 3 3 0 1 0 1 0 0.79 1.00 -12450 PDCD11 programmed cell death 11 1279144 6 6 6 4 2 3 0 1 0 0 0.79 1.00 -12451 FNBP1L formin binding protein 1-like 350800 1 1 1 3 0 1 0 0 0 0 0.79 1.00 -12452 MAPK7 mitogen-activated protein kinase 7 515144 3 3 3 1 3 0 0 0 0 0 0.79 1.00 -12453 CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1 331688 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -12454 SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5 354368 1 1 1 1 0 0 1 0 0 0 0.79 1.00 -12455 BFAR bifunctional apoptosis regulator 309344 1 1 1 1 0 0 1 0 0 0 0.79 1.00 -12456 KRT28 keratin 28 319648 1 1 1 3 1 0 0 0 0 0 0.79 1.00 -12457 CXorf23 chromosome X open reading frame 23 468832 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -12458 C1orf190 chromosome 1 open reading frame 190 160468 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12459 ISLR2 immunoglobulin superfamily containing leucine-rich repeat 2 453740 4 4 4 3 3 0 0 0 1 0 0.79 1.00 -12460 TXNDC16 thioredoxin domain containing 16 572096 2 2 2 0 0 0 2 0 0 0 0.79 1.00 -12461 HOXD3 homeobox D3 270256 2 2 2 0 1 0 0 0 1 0 0.79 1.00 -12462 OTOP3 otopetrin 3 358792 3 3 3 3 1 1 1 0 0 0 0.79 1.00 -12463 GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa 233828 1 1 1 1 0 0 1 0 0 0 0.79 1.00 -12464 TTBK2 tau tubulin kinase 2 849184 6 5 6 2 0 3 3 0 0 0 0.79 1.00 -12465 PTX4 292656 1 1 1 1 0 0 0 1 0 0 0.79 1.00 -12466 FZD4 frizzled homolog 4 (Drosophila) 350028 2 2 2 0 0 2 0 0 0 0 0.79 1.00 -12467 MEGF9 multiple EGF-like-domains 9 349944 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -12468 SMTN smoothelin 588488 3 3 3 0 1 0 1 0 1 0 0.79 1.00 -12469 HOXB6 homeobox B6 126108 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12470 DACH1 dachshund homolog 1 (Drosophila) 418236 1 1 1 0 0 0 0 0 1 0 0.79 1.00 -12471 PLCB3 phospholipase C, beta 3 (phosphatidylinositol-specific) 736356 4 4 4 1 2 1 0 0 1 0 0.79 1.00 -12472 HMGCR 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 614432 3 3 3 0 2 1 0 0 0 0 0.79 1.00 -12473 OR2A1 olfactory receptor, family 2, subfamily A, member 1 170884 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12474 BDH1 3-hydroxybutyrate dehydrogenase, type 1 236544 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -12475 CSAD cysteine sulfinic acid decarboxylase 352752 2 2 2 0 1 1 0 0 0 0 0.79 1.00 -12476 GNA11 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 225680 1 1 1 1 1 0 0 0 0 0 0.79 1.00 -12477 NUP210L nucleoporin 210kDa-like 1305112 10 6 10 1 2 3 4 0 1 0 0.79 1.00 -12478 CHRNA9 cholinergic receptor, nicotinic, alpha 9 327040 2 2 2 2 1 1 0 0 0 0 0.80 1.00 -12479 IRAK3 interleukin-1 receptor-associated kinase 3 381248 3 2 2 0 2 1 0 0 0 0 0.80 1.00 -12480 TBL1Y transducin (beta)-like 1Y-linked 227500 1 1 1 1 0 0 0 0 1 0 0.80 1.00 -12481 DFNB59 deafness, autosomal recessive 59 242592 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12482 ADAP2 244608 1 1 1 2 0 0 1 0 0 0 0.80 1.00 -12483 CCDC50 coiled-coil domain containing 50 335328 2 2 2 2 1 1 0 0 0 0 0.80 1.00 -12484 SLC24A4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 422464 2 2 2 5 1 0 1 0 0 0 0.80 1.00 -12485 PKN1 protein kinase N1 554460 3 3 3 2 2 0 0 0 1 0 0.80 1.00 -12486 DIRC2 disrupted in renal carcinoma 2 290392 1 1 1 0 0 0 0 0 1 0 0.80 1.00 -12487 MED13 mediator complex subunit 13 1482180 12 7 12 2 3 3 5 0 1 0 0.80 1.00 -12488 C19orf2 chromosome 19 open reading frame 2 351904 2 2 2 4 1 0 1 0 0 0 0.80 1.00 -12489 GPR65 G protein-coupled receptor 65 228032 1 1 1 2 1 0 0 0 0 0 0.80 1.00 -12490 ZNF71 zinc finger protein 71 327656 2 2 2 3 1 1 0 0 0 0 0.80 1.00 -12491 OSBPL10 oxysterol binding protein-like 10 469340 3 3 3 4 3 0 0 0 0 0 0.80 1.00 -12492 SQLE squalene epoxidase 382520 2 2 2 0 0 1 1 0 0 0 0.80 1.00 -12493 LZTS1 leucine zipper, putative tumor suppressor 1 375456 2 2 2 3 1 1 0 0 0 0 0.80 1.00 -12494 PPARG peroxisome proliferator-activated receptor gamma 345128 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12495 PCDH8 protocadherin 8 409948 3 3 3 2 1 1 0 0 1 0 0.80 1.00 -12496 TRAF1 TNF receptor-associated factor 1 279020 2 2 2 0 2 0 0 0 0 0 0.80 1.00 -12497 FAM118A family with sequence similarity 118, member A 247744 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12498 SPTBN1 spectrin, beta, non-erythrocytic 1 1665188 10 8 10 2 4 2 2 0 2 0 0.80 1.00 -12499 PDK2 pyruvate dehydrogenase kinase, isozyme 2 271928 2 2 2 0 0 2 0 0 0 0 0.80 1.00 -12500 NDRG3 NDRG family member 3 266112 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12501 BAT2L1 1467980 9 7 9 2 2 4 1 0 2 0 0.80 1.00 -12502 UBE2Q2 ubiquitin-conjugating enzyme E2Q (putative) 2 258132 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12503 EDC4 enhancer of mRNA decapping 4 942984 3 3 3 1 0 1 0 0 2 0 0.80 1.00 -12504 ALS2CR4 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 274240 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -12505 ACOT11 acyl-CoA thioesterase 11 443224 3 3 3 1 1 2 0 0 0 0 0.80 1.00 -12506 FGF17 fibroblast growth factor 17 128968 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12507 TRIP13 thyroid hormone receptor interactor 13 284116 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12508 CHST14 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 190428 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12509 HDAC11 histone deacetylase 11 238364 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12510 ARIH1 ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) 355468 3 2 3 0 0 1 2 0 0 0 0.80 1.00 -12511 SLC27A5 solute carrier family 27 (fatty acid transporter), member 5 398532 4 4 4 0 0 4 0 0 0 0 0.80 1.00 -12512 GJB4 gap junction protein, beta 4, 30.3kDa 180320 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12513 PIGW phosphatidylinositol glycan anchor biosynthesis, class W 340256 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -12514 STK17A serine/threonine kinase 17a 248052 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -12515 OPRD1 opioid receptor, delta 1 208124 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12516 CDCA7 cell division cycle associated 7 302736 2 2 2 2 1 0 1 0 0 0 0.80 1.00 -12517 KCNT1 potassium channel, subfamily T, member 1 696144 3 3 3 2 1 1 0 0 1 0 0.80 1.00 -12518 ATAD3B ATPase family, AAA domain containing 3B 248196 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12519 C14orf45 chromosome 14 open reading frame 45 356168 1 1 1 0 0 0 0 0 1 0 0.80 1.00 -12520 PHF20 PHD finger protein 20 695968 6 3 6 0 1 3 2 0 0 0 0.80 1.00 -12521 XCR1 chemokine (C motif) receptor 1 225344 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12522 LGALS4 lectin, galactoside-binding, soluble, 4 (galectin 4) 226688 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -12523 AFG3L2 AFG3 ATPase family gene 3-like 2 (yeast) 525056 2 2 2 1 0 1 0 0 1 0 0.80 1.00 -12524 ATP6V0A2 ATPase, H+ transporting, lysosomal V0 subunit a2 583660 2 2 2 2 1 0 1 0 0 0 0.80 1.00 -12525 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 518112 4 3 4 1 1 1 2 0 0 0 0.80 1.00 -12526 LRPPRC leucine-rich PPR-motif containing 937216 5 4 5 4 1 3 0 0 1 0 0.80 1.00 -12527 NFKBID nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta 219072 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12528 NOS2 742088 6 5 6 2 3 1 1 0 1 0 0.80 1.00 -12529 NCK1 NCK adaptor protein 1 256704 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -12530 ASB12 ankyrin repeat and SOCS box-containing 12 210112 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12531 SLC30A7 solute carrier family 30 (zinc transporter), member 7 263200 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12532 TRIB3 tribbles homolog 3 (Drosophila) 202776 1 1 1 2 0 0 0 0 1 0 0.80 1.00 -12533 EI24 etoposide induced 2.4 mRNA 225920 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12534 GLOD4 glyoxalase domain containing 4 208992 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -12535 PPM1G protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform 343192 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12536 SPDEF SAM pointed domain containing ets transcription factor 220032 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12537 JMJD6 jumonji domain containing 6 284284 2 2 2 0 1 1 0 0 0 0 0.80 1.00 -12538 SASS6 spindle assembly 6 homolog (C. elegans) 457408 2 2 2 0 1 1 0 0 0 0 0.80 1.00 -12539 PRODH2 proline dehydrogenase (oxidase) 2 357256 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -12540 PSRC1 proline/serine-rich coiled-coil 1 231028 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12541 GARNL3 GTPase activating Rap/RanGAP domain-like 3 706496 3 3 3 2 0 1 1 0 1 0 0.80 1.00 -12542 SLC37A1 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 375872 2 2 2 0 0 1 1 0 0 0 0.80 1.00 -12543 HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 578268 3 3 3 0 1 1 0 0 1 0 0.80 1.00 -12544 ZNF597 zinc finger protein 597 288288 1 1 1 2 1 0 0 0 0 0 0.80 1.00 -12545 FUT2 fucosyltransferase 2 (secretor status included) 204932 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12546 CD40 CD40 molecule, TNF receptor superfamily member 5 194880 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12547 WSB2 WD repeat and SOCS box-containing 2 276416 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12548 SLC38A4 solute carrier family 38, member 4 381696 1 1 1 3 0 0 1 0 0 0 0.80 1.00 -12549 NFE2L2 nuclear factor (erythroid-derived 2)-like 2 400736 4 2 4 0 1 1 1 0 1 0 0.80 1.00 -12550 PPAP2B phosphatidic acid phosphatase type 2B 215040 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12551 PSTPIP2 proline-serine-threonine phosphatase interacting protein 2 229376 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12552 TRMT6 tRNA methyltransferase 6 homolog (S. cerevisiae) 344512 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -12553 GPKOW G patch domain and KOW motifs 327000 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12554 APOA5 apolipoprotein A-V 211316 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12555 FAM129A family with sequence similarity 129, member A 626696 4 3 4 1 1 0 2 0 1 0 0.80 1.00 -12556 C22orf29 chromosome 22 open reading frame 29 238616 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12557 STK32A serine/threonine kinase 32A 282888 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12558 ECM1 extracellular matrix protein 1 371924 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12559 MST4 283648 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12560 TGDS TDP-glucose 4,6-dehydratase 246624 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12561 SYNPO2L synaptopodin 2-like 507360 5 4 5 0 1 3 1 0 0 0 0.80 1.00 -12562 ZNF181 zinc finger protein 181 345408 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12563 MSTN myostatin 255360 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12564 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 220640 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -12565 GPR110 G protein-coupled receptor 110 624736 2 2 2 3 0 1 1 0 0 0 0.80 1.00 -12566 MYOG myogenin (myogenic factor 4) 153888 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -12567 CRLF3 cytokine receptor-like factor 3 293692 2 1 2 0 0 1 0 0 1 0 0.80 1.00 -12568 ATP2A1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 695072 6 4 6 2 3 2 0 0 1 0 0.80 1.00 -12569 FAM71F2 family with sequence similarity 71, member F2 209672 2 1 2 0 1 1 0 0 0 0 0.80 1.00 -12570 EPSTI1 epithelial stromal interaction 1 (breast) 272216 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -12571 CHAF1B chromatin assembly factor 1, subunit B (p60) 387968 2 2 2 1 1 0 1 0 0 0 0.80 1.00 -12572 COQ6 coenzyme Q6 homolog, monooxygenase (S. cerevisiae) 314152 2 2 2 1 0 2 0 0 0 0 0.80 1.00 -12573 LPAR2 lysophosphatidic acid receptor 2 196840 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12574 SH2D4B SH2 domain containing 4B 201688 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12575 NOSTRIN nitric oxide synthase trafficker 355040 1 1 1 0 0 0 0 0 1 0 0.80 1.00 -12576 TMEM67 transmembrane protein 67 689920 4 3 4 0 0 2 2 0 0 0 0.80 1.00 -12577 OTOP2 otopetrin 2 363420 3 3 3 1 1 2 0 0 0 0 0.80 1.00 -12578 CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 362208 1 1 1 2 0 1 0 0 0 0 0.80 1.00 -12579 C1orf55 chromosome 1 open reading frame 55 306656 3 2 3 0 0 2 1 0 0 0 0.80 1.00 -12580 KEAP1 kelch-like ECH-associated protein 1 400036 3 3 3 1 1 1 1 0 0 0 0.80 1.00 -12581 INPP5D inositol polyphosphate-5-phosphatase, 145kDa 627284 4 4 3 0 3 1 0 0 0 0 0.80 1.00 -12582 POLL polymerase (DNA directed), lambda 384664 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -12583 KHK ketohexokinase (fructokinase) 231344 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12584 ENPP7 ectonucleotide pyrophosphatase/phosphodiesterase 7 295960 2 2 2 1 1 1 0 0 0 0 0.80 1.00 -12585 TDP2 250208 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -12586 KRT80 keratin 80 305684 1 1 1 2 1 0 0 0 0 0 0.80 1.00 -12587 TPSD1 tryptase delta 1 164188 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -12588 C1orf106 chromosome 1 open reading frame 106 340032 1 1 1 0 0 0 0 0 1 0 0.80 1.00 -12589 HHATL hedgehog acyltransferase-like 345000 2 2 2 0 1 1 0 0 0 0 0.80 1.00 -12590 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 480900 2 2 2 0 1 0 0 1 0 0 0.80 1.00 -12591 C10orf68 chromosome 10 open reading frame 68 440608 2 2 2 0 0 2 0 0 0 0 0.80 1.00 -12592 GLI2 GLI-Kruppel family member GLI2 832496 4 4 4 3 2 1 0 0 1 0 0.80 1.00 -12593 SETD1A SET domain containing 1A 1025320 8 7 8 1 6 2 0 0 0 0 0.80 1.00 -12594 EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 1083940 9 7 9 3 5 1 1 0 2 0 0.80 1.00 -12595 C1orf14 chromosome 1 open reading frame 14 396340 2 2 2 1 1 0 1 0 0 0 0.80 1.00 -12596 ANGEL1 angel homolog 1 (Drosophila) 444640 2 2 2 0 0 2 0 0 0 0 0.80 1.00 -12597 BCL3 B-cell CLL/lymphoma 3 209300 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -12598 PLEKHG4B pleckstrin homology domain containing, family G (with RhoGef domain) member 4B 694192 6 5 5 3 2 1 3 0 0 0 0.80 1.00 -12599 WDR76 WD repeat domain 76 432992 2 2 2 0 2 0 0 0 0 0 0.81 1.00 -12600 CPNE8 copine VIII 396784 4 2 4 1 2 1 1 0 0 0 0.81 1.00 -12601 KIAA1949 KIAA1949 246260 2 2 2 2 0 2 0 0 0 0 0.81 1.00 -12602 ZC3H10 zinc finger CCCH-type containing 10 293216 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12603 RBMS2 RNA binding motif, single stranded interacting protein 2 285824 1 1 1 1 0 0 1 0 0 0 0.81 1.00 -12604 MYB v-myb myeloblastosis viral oncogene homolog (avian) 520352 3 3 3 2 2 1 0 0 0 0 0.81 1.00 -12605 C1orf172 chromosome 1 open reading frame 172 258804 1 1 1 1 0 1 0 0 0 0 0.81 1.00 -12606 SMEK1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) 562968 2 2 2 0 0 1 1 0 0 0 0.81 1.00 -12607 KRT35 keratin 35 312704 3 2 3 0 1 1 1 0 0 0 0.81 1.00 -12608 NRXN2 neurexin 2 918688 6 6 6 1 3 2 0 0 1 0 0.81 1.00 -12609 ROM1 retinal outer segment membrane protein 1 235620 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -12610 ARHGAP30 Rho GTPase activating protein 30 738108 3 3 3 1 1 1 1 0 0 0 0.81 1.00 -12611 MTMR4 myotubularin related protein 4 819840 3 3 3 2 0 0 2 0 1 0 0.81 1.00 -12612 MYH15 myosin, heavy chain 15 1346016 13 7 13 2 1 11 1 0 0 0 0.81 1.00 -12613 GPRC5D G protein-coupled receptor, family C, group 5, member D 235200 1 1 1 1 0 1 0 0 0 0 0.81 1.00 -12614 TSSK6 testis-specific serine kinase 6 149492 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -12615 PICK1 protein interacting with PRKCA 1 265156 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -12616 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) 307776 2 1 2 1 0 1 1 0 0 0 0.81 1.00 -12617 MARCH9 membrane-associated ring finger (C3HC4) 9 149844 2 1 2 0 1 1 0 0 0 0 0.81 1.00 -12618 NCOA2 nuclear receptor coactivator 2 1000440 7 6 7 2 2 2 3 0 0 0 0.81 1.00 -12619 SDC1 syndecan 1 193676 1 1 1 1 0 1 0 0 0 0 0.81 1.00 -12620 ACTN3 actinin, alpha 3 559468 3 3 3 4 2 1 0 0 0 0 0.81 1.00 -12621 ARAP3 1037772 8 7 8 3 1 6 1 0 0 0 0.81 1.00 -12622 ANXA6 annexin A6 461320 3 3 3 2 2 1 0 0 0 0 0.81 1.00 -12623 KLB klotho beta 676984 5 3 5 1 0 3 2 0 0 0 0.81 1.00 -12624 GSDMA 292704 1 1 1 2 0 0 0 0 1 0 0.81 1.00 -12625 AIRE autoimmune regulator 251636 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12626 SEMA7A semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) 408072 2 2 2 1 1 0 1 0 0 0 0.81 1.00 -12627 PLCD3 phospholipase C, delta 3 373768 2 2 2 1 0 1 1 0 0 0 0.81 1.00 -12628 WDR38 WD repeat domain 38 203392 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12629 ERLIN2 ER lipid raft associated 2 247072 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12630 GDF15 growth differentiation factor 15 154000 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12631 BRD4 bromodomain containing 4 813440 4 4 4 1 1 2 0 0 1 0 0.81 1.00 -12632 FAM46A family with sequence similarity 46, member A 251804 1 1 1 2 1 0 0 0 0 0 0.81 1.00 -12633 KIAA0652 362432 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12634 ANKRD13D ankyrin repeat domain 13 family, member D 307080 2 2 2 0 2 0 0 0 0 0 0.81 1.00 -12635 RSPH10B radial spoke head 10 homolog B (Chlamydomonas) 611648 3 3 3 1 3 0 0 0 0 0 0.81 1.00 -12636 RANBP9 RAN binding protein 9 409948 1 1 1 1 0 0 1 0 0 0 0.81 1.00 -12637 VPS33B vacuolar protein sorting 33 homolog B (yeast) 433184 2 2 2 0 0 0 2 0 0 0 0.81 1.00 -12638 HOXC6 homeobox C6 160384 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12639 ARSA arylsulfatase A 191380 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12640 LRPAP1 low density lipoprotein receptor-related protein associated protein 1 198184 1 1 1 1 0 1 0 0 0 0 0.81 1.00 -12641 IDH3G isocitrate dehydrogenase 3 (NAD+) gamma 270872 2 2 2 2 2 0 0 0 0 0 0.81 1.00 -12642 RNF19A ring finger protein 19A 571872 4 2 4 1 1 3 0 0 0 0 0.81 1.00 -12643 NUP54 nucleoporin 54kDa 351992 3 2 3 1 1 1 1 0 0 0 0.81 1.00 -12644 MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 555524 6 4 6 4 3 1 1 0 1 0 0.81 1.00 -12645 APPBP2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 405440 1 1 1 1 0 0 0 0 1 0 0.81 1.00 -12646 USP34 ubiquitin specific peptidase 34 2455264 17 9 15 6 4 6 4 0 3 0 0.81 1.00 -12647 SFRP5 secreted frizzled-related protein 5 139540 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12648 ATP6V0D1 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 243712 2 1 2 1 1 1 0 0 0 0 0.81 1.00 -12649 P4HTM 293436 1 1 1 1 0 0 0 0 1 0 0.81 1.00 -12650 KIF1A kinesin family member 1A 1040684 6 6 6 2 6 0 0 0 0 0 0.81 1.00 -12651 ALAD aminolevulinate, delta-, dehydratase 232204 1 1 1 1 1 0 0 0 0 0 0.81 1.00 -12652 PARD6A par-6 partitioning defective 6 homolog alpha (C. elegans) 214200 2 1 2 0 0 1 1 0 0 0 0.81 1.00 -12653 CRTC3 CREB regulated transcription coactivator 3 399616 2 2 2 1 1 1 0 0 0 0 0.81 1.00 -12654 ARGLU1 arginine and glutamate rich 1 183176 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12655 SLC47A2 solute carrier family 47, member 2 420448 1 1 1 1 0 0 1 0 0 0 0.81 1.00 -12656 GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like 183740 1 1 1 1 1 0 0 0 0 0 0.81 1.00 -12657 TLR6 toll-like receptor 6 536480 2 2 2 2 1 0 1 0 0 0 0.81 1.00 -12658 DDX31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 536256 4 3 4 2 2 1 0 0 1 0 0.81 1.00 -12659 DNAJC7 DnaJ (Hsp40) homolog, subfamily C, member 7 340256 3 2 3 0 1 1 1 0 0 0 0.81 1.00 -12660 PYGB phosphorylase, glycogen; brain 576800 4 4 4 1 2 1 1 0 0 0 0.81 1.00 -12661 PWWP2B PWWP domain containing 2B 208768 1 1 1 0 0 0 0 0 1 0 0.81 1.00 -12662 AP1M2 adaptor-related protein complex 1, mu 2 subunit 279360 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12663 FAM46C family with sequence similarity 46, member C 264320 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12664 NPLOC4 nuclear protein localization 4 homolog (S. cerevisiae) 404040 3 3 3 0 2 1 0 0 0 0 0.81 1.00 -12665 GOLGA2 golgi autoantigen, golgin subfamily a, 2 682932 4 3 4 6 1 1 0 1 1 0 0.81 1.00 -12666 AMY2B amylase, alpha 2B (pancreatic) 342104 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -12667 ITGAX integrin, alpha X (complement component 3 receptor 4 subunit) 783336 6 4 6 2 2 3 0 0 1 0 0.81 1.00 -12668 DHH desert hedgehog homolog (Drosophila) 182000 1 1 1 2 1 0 0 0 0 0 0.81 1.00 -12669 LAP3 leucine aminopeptidase 3 351704 2 2 2 2 2 0 0 0 0 0 0.81 1.00 -12670 TPST2 tyrosylprotein sulfotransferase 2 218412 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12671 LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 762360 4 4 4 2 2 1 1 0 0 0 0.81 1.00 -12672 DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 506016 3 3 3 1 1 1 1 0 0 0 0.81 1.00 -12673 NBR1 neighbor of BRCA1 gene 1 391200 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12674 FLII flightless I homolog (Drosophila) 843720 7 6 7 0 3 3 0 0 1 0 0.81 1.00 -12675 C17orf53 chromosome 17 open reading frame 53 442848 2 2 2 1 0 0 2 0 0 0 0.81 1.00 -12676 ATXN3 ataxin 3 253120 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12677 PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 163660 1 1 1 1 0 1 0 0 0 0 0.81 1.00 -12678 PDE12 phosphodiesterase 12 394240 2 2 2 0 0 1 1 0 0 0 0.81 1.00 -12679 RENBP renin binding protein 252032 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -12680 UBQLN1 ubiquilin 1 389172 2 1 2 4 0 0 1 0 1 0 0.81 1.00 -12681 LCAT lecithin-cholesterol acyltransferase 249676 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12682 SIK2 609736 4 3 4 1 1 1 1 0 1 0 0.81 1.00 -12683 NR2F6 nuclear receptor subfamily 2, group F, member 6 116096 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12684 CUX1 cut-like homeobox 1 1111400 6 6 6 5 3 1 1 0 1 0 0.81 1.00 -12685 FAM131B family with sequence similarity 131, member B 229376 1 1 1 2 0 0 1 0 0 0 0.81 1.00 -12686 SEH1L SEH1-like (S. cerevisiae) 285796 1 1 1 1 0 1 0 0 0 0 0.81 1.00 -12687 OSBPL2 oxysterol binding protein-like 2 334880 2 2 2 1 1 1 0 0 0 0 0.81 1.00 -12688 GATA4 GATA binding protein 4 174832 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12689 ADAM20 ADAM metallopeptidase domain 20 523040 1 1 1 2 1 0 0 0 0 0 0.81 1.00 -12690 CXCL16 chemokine (C-X-C motif) ligand 16 188608 1 1 1 1 0 1 0 0 0 0 0.81 1.00 -12691 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 241164 1 1 1 1 0 0 1 0 0 0 0.81 1.00 -12692 PECAM1 platelet/endothelial cell adhesion molecule (CD31 antigen) 278264 2 2 2 0 0 2 0 0 0 0 0.81 1.00 -12693 PLXNA2 plexin A2 1295000 8 7 8 1 4 1 1 0 2 0 0.81 1.00 -12694 SLC45A3 solute carrier family 45, member 3 340256 1 1 1 1 0 0 0 0 1 0 0.81 1.00 -12695 PCDHGA8 protocadherin gamma subfamily A, 8 615104 7 5 7 0 5 1 0 0 1 0 0.81 1.00 -12696 PCDHA11 protocadherin alpha 11 621572 6 6 6 0 4 2 0 0 0 0 0.81 1.00 -12697 AQP7 aquaporin 7 232688 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12698 GPN1 266784 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -12699 RIC3 resistance to inhibitors of cholinesterase 3 homolog (C. elegans) 253344 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -12700 GK5 glycerol kinase 5 (putative) 356728 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -12701 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 369796 2 2 1 0 2 0 0 0 0 0 0.81 1.00 -12702 HIF1A hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 563880 3 2 3 0 1 1 0 0 1 0 0.81 1.00 -12703 BRD2 bromodomain containing 2 372204 3 2 3 1 1 0 2 0 0 0 0.81 1.00 -12704 BARHL1 BarH-like homeobox 1 181916 1 1 1 1 0 0 1 0 0 0 0.81 1.00 -12705 LRRC8C leucine rich repeat containing 8 family, member C 542080 2 2 2 3 1 1 0 0 0 0 0.81 1.00 -12706 TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 305772 2 2 2 4 2 0 0 0 0 0 0.82 1.00 -12707 DUOXA1 dual oxidase maturation factor 1 314708 2 2 2 1 1 1 0 0 0 0 0.82 1.00 -12708 RNF145 ring finger protein 145 473620 5 2 5 0 1 3 1 0 0 0 0.82 1.00 -12709 WWC3 WWC family member 3 700200 7 7 7 4 4 3 0 0 0 0 0.82 1.00 -12710 ACAD10 acyl-Coenzyme A dehydrogenase family, member 10 729064 3 3 3 2 1 2 0 0 0 0 0.82 1.00 -12711 AATF apoptosis antagonizing transcription factor 366464 2 2 2 2 1 1 0 0 0 0 0.82 1.00 -12712 POPDC2 popeye domain containing 2 248864 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12713 B3GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 248864 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12714 RBM6 RNA binding motif protein 6 773248 6 4 6 1 2 1 3 0 0 0 0.82 1.00 -12715 FAM71D family with sequence similarity 71, member D 279544 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12716 ZNF746 zinc finger protein 746 350140 2 2 2 2 0 1 1 0 0 0 0.82 1.00 -12717 ZNF513 zinc finger protein 513 350588 2 2 2 0 1 0 1 0 0 0 0.82 1.00 -12718 AP3M2 adaptor-related protein complex 3, mu 2 subunit 288736 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12719 MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 500724 2 2 2 1 0 0 2 0 0 0 0.82 1.00 -12720 CHERP calcium homeostasis endoplasmic reticulum protein 526684 3 3 3 1 0 2 0 1 0 0 0.82 1.00 -12721 MAGEF1 melanoma antigen family F, 1 194852 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12722 SLC5A10 solute carrier family 5 (sodium/glucose cotransporter), member 10 425376 2 2 2 1 1 0 1 0 0 0 0.82 1.00 -12723 PRUNE2 prune homolog 2 (Drosophila) 2086984 13 10 13 8 4 7 2 0 0 0 0.82 1.00 -12724 CCDC74A coiled-coil domain containing 74A 244664 1 1 1 2 0 1 0 0 0 0 0.82 1.00 -12725 CLEC14A C-type lectin domain family 14, member A 261280 2 2 2 5 1 1 0 0 0 0 0.82 1.00 -12726 OR1M1 olfactory receptor, family 1, subfamily M, member 1 211904 1 1 1 2 0 1 0 0 0 0 0.82 1.00 -12727 SH2D3A SH2 domain containing 3A 312196 3 3 3 1 2 1 0 0 0 0 0.82 1.00 -12728 C15orf42 chromosome 15 open reading frame 42 1236284 9 7 9 1 4 1 3 0 1 0 0.82 1.00 -12729 NBPF3 neuroblastoma breakpoint family, member 3 426048 1 1 1 1 1 0 0 0 0 0 0.82 1.00 -12730 ALDOA aldolase A, fructose-bisphosphate 241024 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12731 SQSTM1 sequestosome 1 270116 1 1 1 1 1 0 0 0 0 0 0.82 1.00 -12732 LRRC23 leucine rich repeat containing 23 277984 1 1 1 2 0 0 1 0 0 0 0.82 1.00 -12733 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 241640 1 1 1 1 1 0 0 0 0 0 0.82 1.00 -12734 ISM1 286048 2 2 2 6 1 1 0 0 0 0 0.82 1.00 -12735 ZNF229 zinc finger protein 229 558656 3 3 3 0 2 1 0 0 0 0 0.82 1.00 -12736 MYNN myoneurin 416864 2 2 2 0 0 2 0 0 0 0 0.82 1.00 -12737 BCAT1 branched chain aminotransferase 1, cytosolic 271488 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12738 C17orf63 chromosome 17 open reading frame 63 357528 2 2 2 1 0 1 1 0 0 0 0.82 1.00 -12739 PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta) 339836 1 1 1 1 0 0 0 0 1 0 0.82 1.00 -12740 RPN2 ribophorin II 447776 1 1 1 1 0 0 1 0 0 0 0.82 1.00 -12741 KIAA0406 KIAA0406 738752 2 2 2 0 0 1 1 0 0 0 0.82 1.00 -12742 DNM2 dynamin 2 600516 6 5 6 3 3 3 0 0 0 0 0.82 1.00 -12743 ACOX2 acyl-Coenzyme A oxidase 2, branched chain 470848 2 2 2 1 0 1 0 1 0 0 0.82 1.00 -12744 HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 194572 2 2 1 1 2 0 0 0 0 0 0.82 1.00 -12745 RORA RAR-related orphan receptor A 423584 2 2 2 0 1 1 0 0 0 0 0.82 1.00 -12746 ATP1B2 ATPase, Na+/K+ transporting, beta 2 polypeptide 201824 2 1 2 1 0 1 1 0 0 0 0.82 1.00 -12747 PARP2 poly (ADP-ribose) polymerase family, member 2 403928 2 2 2 2 1 1 0 0 0 0 0.82 1.00 -12748 MTMR9 myotubularin related protein 9 378560 2 2 2 0 1 0 1 0 0 0 0.82 1.00 -12749 TTLL4 tubulin tyrosine ligase-like family, member 4 822024 5 4 5 1 2 1 2 0 0 0 0.82 1.00 -12750 HSPA12A heat shock 70kDa protein 12A 441056 3 3 3 2 2 0 1 0 0 0 0.82 1.00 -12751 TJP1 tight junction protein 1 (zona occludens 1) 1193472 8 6 8 4 3 1 1 0 1 2 0.82 1.00 -12752 MATN1 matrilin 1, cartilage matrix protein 283436 2 2 2 0 2 0 0 0 0 0 0.82 1.00 -12753 PLK3 polo-like kinase 3 (Drosophila) 383468 2 2 2 0 1 0 1 0 0 0 0.82 1.00 -12754 SEPP1 selenoprotein P, plasma, 1 270328 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12755 WWP2 WW domain containing E3 ubiquitin protein ligase 2 606816 4 3 4 6 1 1 1 0 1 0 0.82 1.00 -12756 KCNH3 potassium voltage-gated channel, subfamily H (eag-related), member 3 663096 5 5 5 1 2 3 0 0 0 0 0.82 1.00 -12757 ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 869120 8 5 8 3 3 5 0 0 0 0 0.82 1.00 -12758 MTA1 metastasis associated 1 350028 1 1 1 0 0 0 0 0 1 0 0.82 1.00 -12759 ALX1 ALX homeobox 1 219716 1 1 1 1 0 0 1 0 0 0 0.82 1.00 -12760 C12orf66 302400 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12761 GLRA4 glycine receptor, alpha 4 264768 1 1 1 1 1 0 0 0 0 0 0.82 1.00 -12762 ELANE 143696 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -12763 SUMF2 sulfatase modifying factor 2 261248 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12764 SIX2 SIX homeobox 2 185248 2 2 2 1 1 1 0 0 0 0 0.82 1.00 -12765 RABEP1 rabaptin, RAB GTPase binding effector protein 1 578848 3 3 3 0 1 1 1 0 0 0 0.82 1.00 -12766 SLC26A4 solute carrier family 26, member 4 505120 4 3 4 3 1 2 1 0 0 0 0.82 1.00 -12767 LIG1 ligase I, DNA, ATP-dependent 626552 4 4 4 3 1 1 1 0 1 0 0.82 1.00 -12768 PHAX 269920 1 1 1 2 0 1 0 0 0 0 0.82 1.00 -12769 JPH2 junctophilin 2 320460 2 2 2 3 1 0 1 0 0 0 0.82 1.00 -12770 SIN3B SIN3 homolog B, transcription regulator (yeast) 762652 4 4 4 5 3 1 0 0 0 0 0.82 1.00 -12771 SSFA2 sperm specific antigen 2 827088 3 3 3 2 1 1 0 0 1 0 0.82 1.00 -12772 RAD54L2 RAD54-like 2 (S. cerevisiae) 931592 4 4 4 1 1 2 0 0 1 0 0.82 1.00 -12773 FAM153B family with sequence similarity 153, member B 203524 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12774 FCHO1 FCH domain only 1 585588 5 4 5 1 2 2 1 0 0 0 0.82 1.00 -12775 PAQR8 progestin and adipoQ receptor family member VIII 239456 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12776 RAB34 RAB34, member RAS oncogene family 209776 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12777 SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 520576 3 3 3 0 2 0 1 0 0 0 0.82 1.00 -12778 FASTKD2 FAST kinase domains 2 487648 5 2 5 0 1 3 0 0 1 0 0.82 1.00 -12779 PLA2G4F phospholipase A2, group IVF 576356 2 2 2 1 0 2 0 0 0 0 0.82 1.00 -12780 WDR62 WD repeat domain 62 1007452 6 6 6 2 4 1 1 0 0 0 0.82 1.00 -12781 ALX4 aristaless-like homeobox 4 198384 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12782 RTTN rotatin 1540448 7 6 7 1 2 0 2 1 2 0 0.82 1.00 -12783 DOK7 docking protein 7 202312 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12784 DDX28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 296212 2 2 2 0 0 1 1 0 0 0 0.82 1.00 -12785 LSG1 large subunit GTPase 1 homolog (S. cerevisiae) 455392 2 2 2 0 1 1 0 0 0 0 0.82 1.00 -12786 ZNF446 zinc finger protein 446 240044 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12787 MAP3K15 mitogen-activated protein kinase kinase kinase 15 761400 4 4 4 4 1 3 0 0 0 0 0.82 1.00 -12788 SLC26A10 solute carrier family 26, member 10 376864 3 2 3 0 0 3 0 0 0 0 0.82 1.00 -12789 NLRP2 NLR family, pyrin domain containing 2 706524 4 4 4 6 3 1 0 0 0 0 0.82 1.00 -12790 TWF2 twinfilin, actin-binding protein, homolog 2 (Drosophila) 238756 1 1 1 2 1 0 0 0 0 0 0.82 1.00 -12791 ABCC6 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 913756 7 6 7 3 2 3 2 0 0 0 0.82 1.00 -12792 MMP25 matrix metallopeptidase 25 290792 2 2 2 0 1 1 0 0 0 0 0.82 1.00 -12793 PEX13 peroxisome biogenesis factor 13 253568 1 1 1 1 1 0 0 0 0 0 0.82 1.00 -12794 MAP3K1 mitogen-activated protein kinase kinase kinase 1 925792 8 5 8 2 4 3 0 0 1 0 0.82 1.00 -12795 PGLYRP2 peptidoglycan recognition protein 2 358836 3 2 3 1 0 2 1 0 0 0 0.82 1.00 -12796 ACTR3B ARP3 actin-related protein 3 homolog B (yeast) 281568 1 1 1 0 0 0 0 0 1 0 0.82 1.00 -12797 ZNF823 zinc finger protein 823 414176 4 2 4 0 2 1 1 0 0 0 0.82 1.00 -12798 CELF1 340928 1 1 1 1 0 1 0 0 0 0 0.82 1.00 -12799 USP14 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) 342496 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12800 CYFIP1 cytoplasmic FMR1 interacting protein 1 868224 6 6 6 3 1 3 2 0 0 0 0.82 1.00 -12801 SHROOM4 shroom family member 4 999384 4 4 4 2 1 0 2 0 1 0 0.82 1.00 -12802 UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7 361312 2 2 2 0 1 1 0 0 0 0 0.82 1.00 -12803 GORAB 270816 1 1 1 2 0 1 0 0 0 0 0.82 1.00 -12804 IGHMBP2 immunoglobulin mu binding protein 2 644224 4 4 4 0 4 0 0 0 0 0 0.82 1.00 -12805 PAFAH2 platelet-activating factor acetylhydrolase 2, 40kDa 273056 1 1 1 1 1 0 0 0 0 0 0.82 1.00 -12806 STOML1 stomatin (EPB72)-like 1 266448 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -12807 PHF1 PHD finger protein 1 383424 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12808 STXBP3 syntaxin binding protein 3 408312 1 1 1 1 0 0 1 0 0 0 0.82 1.00 -12809 PKP4 plakophilin 4 820512 6 5 6 3 3 0 1 0 2 0 0.82 1.00 -12810 DNPEP aspartyl aminopeptidase 331612 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12811 ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 451640 2 2 2 4 2 0 0 0 0 0 0.82 1.00 -12812 KCTD12 potassium channel tetramerisation domain containing 12 112924 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12813 NAA35 507584 2 2 2 1 0 1 0 0 1 0 0.82 1.00 -12814 ATP6V0A1 ATPase, H+ transporting, lysosomal V0 subunit a1 586656 3 3 3 1 1 2 0 0 0 0 0.82 1.00 -12815 TLR1 toll-like receptor 1 529760 5 3 5 1 1 4 0 0 0 0 0.82 1.00 -12816 TRMT61B 327488 1 1 1 1 0 0 1 0 0 0 0.82 1.00 -12817 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 698936 7 4 7 3 3 2 1 0 1 0 0.82 1.00 -12818 NUPL1 nucleoporin like 1 417536 2 2 2 0 1 1 0 0 0 0 0.82 1.00 -12819 BANP BTG3 associated nuclear protein 313796 3 2 3 0 2 0 0 0 1 0 0.82 1.00 -12820 ALDH3A1 aldehyde dehydrogenase 3 family, memberA1 299964 2 2 2 0 2 0 0 0 0 0 0.82 1.00 -12821 RUSC2 RUN and SH3 domain containing 2 1012816 5 5 5 4 0 3 1 1 0 0 0.82 1.00 -12822 RBMXL2 RNA binding motif protein, X-linked-like 2 152712 2 2 2 0 2 0 0 0 0 0 0.82 1.00 -12823 SLC16A6 solute carrier family 16, member 6 (monocarboxylic acid transporter 7) 340312 2 2 2 1 2 0 0 0 0 0 0.82 1.00 -12824 SARM1 sterile alpha and TIR motif containing 1 247948 1 1 1 2 0 1 0 0 0 0 0.82 1.00 -12825 SLC35A5 solute carrier family 35, member A5 290976 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -12826 MIER2 mesoderm induction early response 1, family member 2 360412 4 3 4 1 2 2 0 0 0 0 0.82 1.00 -12827 LGI4 leucine-rich repeat LGI family, member 4 255808 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -12828 LDLRAD2 low density lipoprotein receptor class A domain containing 2 141036 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -12829 LETM2 leucine zipper-EF-hand containing transmembrane protein 2 273952 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -12830 ENTHD1 ENTH domain containing 1 413952 3 2 3 2 1 2 0 0 0 0 0.82 1.00 -12831 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 613348 3 3 3 1 2 0 1 0 0 0 0.82 1.00 -12832 BAZ1A bromodomain adjacent to zinc finger domain, 1A 1069600 7 5 7 0 2 3 1 0 1 0 0.83 1.00 -12833 HMGCS1 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) 358176 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12834 GP1BA glycoprotein Ib (platelet), alpha polypeptide 428528 1 1 1 2 0 0 0 0 1 0 0.83 1.00 -12835 MVK mevalonate kinase 275744 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12836 HTRA3 HtrA serine peptidase 3 243208 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12837 NLRP14 NLR family, pyrin domain containing 14 745024 7 3 7 4 1 4 1 0 1 0 0.83 1.00 -12838 RCOR1 REST corepressor 1 254688 1 1 1 0 0 0 1 0 0 0 0.83 1.00 -12839 SH3BP1 SH3-domain binding protein 1 304528 1 1 1 1 0 0 1 0 0 0 0.83 1.00 -12840 F2RL1 coagulation factor II (thrombin) receptor-like 1 251664 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12841 HP haptoglobin 245040 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12842 EXOC7 exocyst complex component 7 466680 2 2 2 2 2 0 0 0 0 0 0.83 1.00 -12843 SETMAR SET domain and mariner transposase fusion gene 301308 1 1 1 1 0 0 0 0 1 0 0.83 1.00 -12844 KIAA0467 KIAA0467 1729536 10 8 10 9 3 4 1 1 1 0 0.83 1.00 -12845 KCNJ13 potassium inwardly-rectifying channel, subfamily J, member 13 244384 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12846 KLHL28 kelch-like 28 (Drosophila) 387968 3 2 3 0 0 3 0 0 0 0 0.83 1.00 -12847 GREB1 1287356 12 10 12 7 6 4 1 0 1 0 0.83 1.00 -12848 RAG2 recombination activating gene 2 355628 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12849 CCDC52 coiled-coil domain containing 52 590464 2 2 2 0 0 2 0 0 0 0 0.83 1.00 -12850 DIXDC1 DIX domain containing 1 448304 2 2 2 1 1 0 0 0 1 0 0.83 1.00 -12851 CHD7 chromodomain helicase DNA binding protein 7 1998948 11 9 11 4 3 3 3 0 2 0 0.83 1.00 -12852 LDLR low density lipoprotein receptor (familial hypercholesterolemia) 592116 5 5 5 0 3 0 2 0 0 0 0.83 1.00 -12853 NEU1 sialidase 1 (lysosomal sialidase) 193788 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12854 TKT transketolase (Wernicke-Korsakoff syndrome) 431788 3 3 3 1 3 0 0 0 0 0 0.83 1.00 -12855 CSF1R colony stimulating factor 1 receptor, formerly McDonough feline sarcoma viral (v-fms) oncogene homolog 656076 3 3 3 2 0 1 1 0 1 0 0.83 1.00 -12856 WLS 403200 1 1 1 1 0 0 1 0 0 0 0.83 1.00 -12857 HAUS5 419428 2 2 2 0 0 2 0 0 0 0 0.83 1.00 -12858 XKR4 XK, Kell blood group complex subunit-related family, member 4 375704 2 2 2 2 1 1 0 0 0 0 0.83 1.00 -12859 LTBP2 latent transforming growth factor beta binding protein 2 1167156 7 6 7 2 4 0 2 0 1 0 0.83 1.00 -12860 KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) 265664 1 1 1 3 0 1 0 0 0 0 0.83 1.00 -12861 HARS histidyl-tRNA synthetase 354368 2 1 2 0 1 0 0 0 1 0 0.83 1.00 -12862 UGT2B10 UDP glucuronosyltransferase 2 family, polypeptide B10 360864 1 1 1 0 0 0 1 0 0 0 0.83 1.00 -12863 ACOT7 acyl-CoA thioesterase 7 288120 2 2 2 1 2 0 0 0 0 0 0.83 1.00 -12864 LRRC55 leucine rich repeat containing 55 231616 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12865 PROX2 prospero homeobox 2 402080 2 2 2 0 1 1 0 0 0 0 0.83 1.00 -12866 DGKZ diacylglycerol kinase, zeta 104kDa 579284 3 3 3 2 2 0 0 0 1 0 0.83 1.00 -12867 AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 372980 2 2 2 1 0 1 1 0 0 0 0.83 1.00 -12868 NUDCD3 NudC domain containing 3 245420 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12869 PYGM phosphorylase, glycogen; muscle (McArdle syndrome, glycogen storage disease type V) 580444 4 4 4 0 2 1 1 0 0 0 0.83 1.00 -12870 EHMT2 euchromatic histone-lysine N-methyltransferase 2 595476 3 3 3 0 3 0 0 0 0 0 0.83 1.00 -12871 DCBLD2 discoidin, CUB and LCCL domain containing 2 499728 2 2 2 1 0 2 0 0 0 0 0.83 1.00 -12872 FLNC filamin C, gamma (actin binding protein 280) 1782744 13 11 13 3 5 4 2 0 2 0 0.83 1.00 -12873 HABP4 hyaluronan binding protein 4 206304 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12874 FAM81A family with sequence similarity 81, member A 255136 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12875 C20orf152 chromosome 20 open reading frame 152 395808 1 1 1 1 0 0 1 0 0 0 0.83 1.00 -12876 TMC5 transmembrane channel-like 5 758072 4 4 4 1 1 3 0 0 0 0 0.83 1.00 -12877 DYNC1LI1 dynein, cytoplasmic 1, light intermediate chain 1 363096 1 1 1 0 0 0 0 0 1 0 0.83 1.00 -12878 AMPD3 adenosine monophosphate deaminase (isoform E) 533764 3 3 3 1 1 0 1 0 1 0 0.83 1.00 -12879 TMF1 TATA element modulatory factor 1 750400 5 4 5 0 0 4 1 0 0 0 0.83 1.00 -12880 PLCD4 phospholipase C, delta 4 526176 2 2 2 0 0 1 0 1 0 0 0.83 1.00 -12881 LDHD lactate dehydrogenase D 305872 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12882 DEPDC5 DEP domain containing 5 1087576 7 6 7 2 0 2 4 0 1 0 0.83 1.00 -12883 YTHDF2 YTH domain family, member 2 381808 2 2 2 0 0 1 1 0 0 0 0.83 1.00 -12884 CERCAM cerebral endothelial cell adhesion molecule 358008 1 1 1 1 0 0 1 0 0 0 0.83 1.00 -12885 ATF6B 489216 1 1 1 1 0 0 0 0 1 0 0.83 1.00 -12886 PVR poliovirus receptor 271712 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12887 FICD FIC domain containing 310240 1 1 1 3 1 0 0 0 0 0 0.83 1.00 -12888 IL17RB interleukin 17 receptor B 341096 1 1 1 2 0 0 1 0 0 0 0.83 1.00 -12889 IRGC immunity-related GTPase family, cinema 269444 2 2 2 1 2 0 0 0 0 0 0.83 1.00 -12890 RDBP RD RNA binding protein 220388 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12891 ECH1 enoyl Coenzyme A hydratase 1, peroxisomal 229376 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12892 POU6F2 POU class 6 homeobox 2 469312 3 3 3 1 1 2 0 0 0 0 0.83 1.00 -12893 DOK2 docking protein 2, 56kDa 230360 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12894 GPAT2 351064 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12895 LRRC42 leucine rich repeat containing 42 294560 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12896 ZBTB7B zinc finger and BTB domain containing 7B 364672 1 1 1 1 0 0 1 0 0 0 0.83 1.00 -12897 CELF6 197388 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12898 JUP junction plakoglobin 511328 2 2 2 2 0 0 1 0 1 0 0.83 1.00 -12899 KIF12 kinesin family member 12 328504 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12900 API5 apoptosis inhibitor 5 355264 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12901 TBX6 T-box 6 279912 1 1 1 0 0 0 1 0 0 0 0.83 1.00 -12902 ZNF224 zinc finger protein 224 479360 2 2 2 3 0 2 0 0 0 0 0.83 1.00 -12903 CDCP1 CUB domain containing protein 1 564508 2 2 2 1 0 0 2 0 0 0 0.83 1.00 -12904 SLC9A1 solute carrier family 9 (sodium/hydrogen exchanger), member 1 (antiporter, Na+/H+, amiloride sensitive) 549612 4 4 4 0 2 2 0 0 0 0 0.83 1.00 -12905 AHSG alpha-2-HS-glycoprotein 253568 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12906 ARSE arylsulfatase E (chondrodysplasia punctata 1) 405440 2 2 2 0 1 0 1 0 0 0 0.83 1.00 -12907 FKBP15 FK506 binding protein 15, 133kDa 809144 5 4 5 1 3 2 0 0 0 0 0.83 1.00 -12908 NPNT nephronectin 380904 1 1 1 1 0 0 0 0 1 0 0.83 1.00 -12909 HEATR6 HEAT repeat containing 6 806168 3 3 3 2 1 1 0 0 1 0 0.83 1.00 -12910 MMRN2 multimerin 2 515976 4 4 4 1 3 0 1 0 0 0 0.83 1.00 -12911 CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 175532 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12912 USP43 ubiquitin specific peptidase 43 608336 3 3 3 1 1 1 1 0 0 0 0.83 1.00 -12913 ZNF331 zinc finger protein 331 314496 2 2 2 4 2 0 0 0 0 0 0.83 1.00 -12914 SERBP1 SERPINE1 mRNA binding protein 1 280756 2 2 2 1 1 1 0 0 0 0 0.83 1.00 -12915 SNX9 sorting nexin 9 413056 2 2 2 1 0 1 1 0 0 0 0.83 1.00 -12916 ZNF165 zinc finger protein 165 329280 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12917 GDF5 growth differentiation factor 5 327628 2 2 2 1 0 2 0 0 0 0 0.83 1.00 -12918 KRT4 keratin 4 407904 2 2 2 4 1 1 0 0 0 0 0.83 1.00 -12919 LDOC1L leucine zipper, down-regulated in cancer 1-like 152516 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12920 CREB3L3 cAMP responsive element binding protein 3-like 3 305732 3 2 3 0 2 1 0 0 0 0 0.83 1.00 -12921 GSG2 germ cell associated 2 (haspin) 495936 2 2 2 0 0 1 1 0 0 0 0.83 1.00 -12922 KIF26B kinesin family member 26B 1083396 8 8 7 3 6 1 0 0 1 0 0.83 1.00 -12923 SIGLEC5 sialic acid binding Ig-like lectin 5 327148 3 2 3 1 0 2 1 0 0 0 0.83 1.00 -12924 ZFHX3 zinc finger homeobox 3 2482312 14 14 14 9 4 8 2 0 0 0 0.83 1.00 -12925 CA4 carbonic anhydrase IV 191408 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12926 PROZ protein Z, vitamin K-dependent plasma glycoprotein 251772 1 1 1 1 1 0 0 0 0 0 0.83 1.00 -12927 ABCB7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 516944 4 3 4 1 1 1 2 0 0 0 0.83 1.00 -12928 NT5DC1 5'-nucleotidase domain containing 1 316512 1 1 1 1 0 0 1 0 0 0 0.83 1.00 -12929 BCO2 beta-carotene oxygenase 2 400512 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12930 NSMCE1 non-SMC element 1 homolog (S. cerevisiae) 185696 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12931 PIBF1 progesterone immunomodulatory binding factor 1 524608 1 1 1 0 0 0 1 0 0 0 0.83 1.00 -12932 PTK2B PTK2B protein tyrosine kinase 2 beta 700824 1 1 1 1 0 0 0 0 1 0 0.83 1.00 -12933 ZBTB40 zinc finger and BTB domain containing 40 848512 4 4 4 2 1 3 0 0 0 0 0.83 1.00 -12934 HOXA7 homeobox A7 150556 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12935 UNG uracil-DNA glycosylase 217560 1 1 1 0 0 0 1 0 0 0 0.83 1.00 -12936 ACP5 acid phosphatase 5, tartrate resistant 219884 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12937 DHDH dihydrodiol dehydrogenase (dimeric) 214480 1 1 1 2 1 0 0 0 0 0 0.83 1.00 -12938 TEX2 testis expressed 2 772576 3 3 3 0 1 1 0 0 1 0 0.83 1.00 -12939 TBC1D4 TBC1 domain family, member 4 867972 7 5 7 6 1 4 1 0 1 0 0.83 1.00 -12940 MOAP1 modulator of apoptosis 1 237440 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12941 CDC123 cell division cycle 123 homolog (S. cerevisiae) 238112 1 1 1 1 0 1 0 0 0 0 0.83 1.00 -12942 COL4A2 collagen, type IV, alpha 2 1110480 4 4 4 0 1 0 1 0 2 0 0.83 1.00 -12943 BPI bactericidal/permeability-increasing protein 341376 3 2 3 3 2 1 0 0 0 0 0.83 1.00 -12944 ACAP2 536344 4 3 4 0 2 1 1 0 0 0 0.83 1.00 -12945 BEST4 bestrophin 4 215008 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12946 ZNF238 zinc finger protein 238 356608 3 2 3 0 3 0 0 0 0 0 0.83 1.00 -12947 TMEM53 transmembrane protein 53 189504 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12948 LRRC32 leucine rich repeat containing 32 447328 2 2 2 1 0 2 0 0 0 0 0.83 1.00 -12949 WAS Wiskott-Aldrich syndrome (eczema-thrombocytopenia) 295040 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -12950 KIF27 kinesin family member 27 957292 7 4 7 0 2 2 2 0 1 0 0.83 1.00 -12951 GJC2 gap junction protein, gamma 2, 47kDa 154140 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -12952 RPAP3 RNA polymerase II associated protein 3 461888 3 2 3 1 2 0 1 0 0 0 0.84 1.00 -12953 ALMS1 Alstrom syndrome 1 2770900 19 10 19 12 4 5 7 0 3 0 0.84 1.00 -12954 SATB1 SATB homeobox 1 522368 2 2 2 2 0 2 0 0 0 0 0.84 1.00 -12955 TAOK3 TAO kinase 3 621152 4 4 4 1 0 2 2 0 0 0 0.84 1.00 -12956 SYBU 449568 2 2 2 0 1 1 0 0 0 0 0.84 1.00 -12957 C10orf27 chromosome 10 open reading frame 27 239984 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -12958 EFNB2 ephrin-B2 228928 1 1 1 1 0 0 1 0 0 0 0.84 1.00 -12959 LAMP2 lysosomal-associated membrane protein 2 349440 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -12960 KIF17 kinesin family member 17 675068 6 5 6 3 3 3 0 0 0 0 0.84 1.00 -12961 APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like) 508256 3 2 3 0 1 1 1 0 0 0 0.84 1.00 -12962 KCNAB2 potassium voltage-gated channel, shaker-related subfamily, beta member 2 213948 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -12963 GABRR1 gamma-aminobutyric acid (GABA) receptor, rho 1 329728 2 2 2 5 2 0 0 0 0 0 0.84 1.00 -12964 VGF VGF nerve growth factor inducible 219100 1 1 1 0 0 0 1 0 0 0 0.84 1.00 -12965 TBC1D16 TBC1 domain family, member 16 425404 2 2 2 1 0 0 1 0 1 0 0.84 1.00 -12966 WRNIP1 Werner helicase interacting protein 1 310520 1 1 1 0 0 0 1 0 0 0 0.84 1.00 -12967 TBC1D2 TBC1 domain family, member 2 602208 6 4 6 1 5 1 0 0 0 0 0.84 1.00 -12968 ATL3 375328 1 1 1 0 0 0 0 0 1 0 0.84 1.00 -12969 ZNF799 zinc finger protein 799 419760 3 2 3 1 1 2 0 0 0 0 0.84 1.00 -12970 SPPL2B 321220 2 2 2 0 1 0 1 0 0 0 0.84 1.00 -12971 PPIL4 peptidylprolyl isomerase (cyclophilin)-like 4 342808 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -12972 KLHL3 kelch-like 3 (Drosophila) 408576 3 3 3 1 1 2 0 0 0 0 0.84 1.00 -12973 MPL myeloproliferative leukemia virus oncogene 415136 2 2 2 1 0 2 0 0 0 0 0.84 1.00 -12974 SCARA3 scavenger receptor class A, member 3 375812 2 2 2 2 2 0 0 0 0 0 0.84 1.00 -12975 SIK3 790572 4 4 4 2 0 1 2 0 1 0 0.84 1.00 -12976 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 746144 3 3 3 0 0 2 1 0 0 0 0.84 1.00 -12977 EHBP1L1 EH domain binding protein 1-like 1 620444 2 2 2 1 1 0 0 0 1 0 0.84 1.00 -12978 ZCWPW1 zinc finger, CW type with PWWP domain 1 450464 3 2 3 2 0 3 0 0 0 0 0.84 1.00 -12979 IMPAD1 inositol monophosphatase domain containing 1 207816 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -12980 STK35 serine/threonine kinase 35 210448 1 1 1 1 1 0 0 0 0 0 0.84 1.00 -12981 STRN3 striatin, calmodulin binding protein 3 508600 2 2 2 0 0 1 1 0 0 0 0.84 1.00 -12982 ANKRD56 ankyrin repeat domain 56 375732 2 2 2 0 2 0 0 0 0 0 0.84 1.00 -12983 TOM1 target of myb1 (chicken) 338716 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -12984 GFRA2 GDNF family receptor alpha 2 229728 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -12985 POLG2 polymerase (DNA directed), gamma 2, accessory subunit 333760 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -12986 SH3BP4 SH3-domain binding protein 4 633928 3 3 3 3 2 1 0 0 0 0 0.84 1.00 -12987 ZNF394 zinc finger protein 394 380352 1 1 1 2 0 1 0 0 0 0 0.84 1.00 -12988 SORCS2 sortilin-related VPS10 domain containing receptor 2 627824 5 5 4 3 4 1 0 0 0 0 0.84 1.00 -12989 PPP2CB protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform 214592 2 1 2 0 1 1 0 0 0 0 0.84 1.00 -12990 GCK glucokinase (hexokinase 4) 323568 2 2 2 4 2 0 0 0 0 0 0.84 1.00 -12991 NEUROG2 neurogenin 2 140224 1 1 1 2 1 0 0 0 0 0 0.84 1.00 -12992 KIAA0090 KIAA0090 688576 3 3 3 2 1 0 1 0 1 0 0.84 1.00 -12993 YY2 YY2 transcription factor 251552 1 1 1 4 0 1 0 0 0 0 0.84 1.00 -12994 TESK1 testis-specific kinase 1 397656 2 2 2 1 1 0 1 0 0 0 0.84 1.00 -12995 TYRO3 TYRO3 protein tyrosine kinase 576520 3 3 3 1 0 2 0 0 1 0 0.84 1.00 -12996 RBM16 RNA binding motif protein 16 869848 8 5 8 5 2 4 2 0 0 0 0.84 1.00 -12997 ZNF710 zinc finger protein 710 429476 3 3 3 1 0 2 1 0 0 0 0.84 1.00 -12998 IDO2 284472 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -12999 MDH2 malate dehydrogenase 2, NAD (mitochondrial) 220192 1 1 1 1 1 0 0 0 0 0 0.84 1.00 -13000 CERK ceramide kinase 324360 1 1 1 1 0 0 1 0 0 0 0.84 1.00 -13001 QSER1 glutamine and serine rich 1 1176448 5 4 5 2 0 2 2 0 1 0 0.84 1.00 -13002 CTSE cathepsin E 284480 1 1 1 2 0 1 0 0 0 0 0.84 1.00 -13003 FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) 223244 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -13004 POMGNT1 protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase 463008 2 2 2 1 0 0 2 0 0 0 0.84 1.00 -13005 NDUFV3 NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa 308112 1 1 1 0 0 0 0 0 1 0 0.84 1.00 -13006 ZNF282 zinc finger protein 282 325980 3 3 3 0 2 1 0 0 0 0 0.84 1.00 -13007 TJAP1 tight junction associated protein 1 (peripheral) 355012 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -13008 TTLL13 tubulin tyrosine ligase-like family, member 13 316092 1 1 1 3 0 0 1 0 0 0 0.84 1.00 -13009 GANC glucosidase, alpha; neutral C 636384 3 3 3 0 1 1 1 0 0 0 0.84 1.00 -13010 DRD1 dopamine receptor D1 301280 1 1 1 2 0 1 0 0 0 0 0.84 1.00 -13011 NLGN2 neuroligin 2 391048 2 2 2 1 1 1 0 0 0 0 0.84 1.00 -13012 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 253344 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -13013 USP8 ubiquitin specific peptidase 8 768068 3 3 3 1 0 1 2 0 0 0 0.84 1.00 -13014 GPR39 G protein-coupled receptor 39 306880 3 2 3 4 1 1 1 0 0 0 0.84 1.00 -13015 SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 433216 2 2 2 4 1 0 1 0 0 0 0.84 1.00 -13016 BSCL2 Bernardinelli-Seip congenital lipodystrophy 2 (seipin) 279328 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -13017 OSBPL7 oxysterol binding protein-like 7 543444 3 3 3 2 1 0 2 0 0 0 0.84 1.00 -13018 TRIM16L tripartite motif-containing 16-like 238112 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -13019 MYOM1 myomesin 1, 185kDa 1163772 12 6 10 3 4 3 2 0 3 0 0.84 1.00 -13020 TAB1 365488 1 1 1 2 0 0 0 0 1 0 0.84 1.00 -13021 STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 538720 2 2 2 1 1 1 0 0 0 0 0.84 1.00 -13022 KIAA1147 KIAA1147 249352 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -13023 CDK6 cyclin-dependent kinase 6 211400 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -13024 HNRNPM 444728 3 3 3 3 1 1 1 0 0 0 0.84 1.00 -13025 ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 1074976 9 5 9 3 2 4 2 0 1 0 0.84 1.00 -13026 SLC24A6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 403376 2 2 2 0 1 0 1 0 0 0 0.84 1.00 -13027 BCAN brevican 611240 2 2 2 4 0 1 1 0 0 0 0.84 1.00 -13028 MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 1052888 6 5 6 4 3 2 0 0 1 0 0.84 1.00 -13029 TMEM184B transmembrane protein 184B 274540 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -13030 C7orf28B chromosome 7 open reading frame 28B 270704 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -13031 DDR1 discoidin domain receptor tyrosine kinase 1 575932 4 3 4 0 3 0 0 0 1 0 0.84 1.00 -13032 TAB2 471744 2 2 2 0 1 1 0 0 0 0 0.84 1.00 -13033 SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 249144 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -13034 HMBOX1 homeobox containing 1 290976 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -13035 TTF1 transcription termination factor, RNA polymerase I 617792 2 2 2 3 0 1 0 0 1 0 0.84 1.00 -13036 CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 285300 3 2 3 1 3 0 0 0 0 0 0.84 1.00 -13037 PDIA6 protein disulfide isomerase family A, member 6 297552 1 1 1 1 1 0 0 0 0 0 0.84 1.00 -13038 RCE1 RCE1 homolog, prenyl protein peptidase (S. cerevisiae) 197960 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -13039 HIPK2 homeodomain interacting protein kinase 2 793616 4 4 4 1 4 0 0 0 0 0 0.84 1.00 -13040 PATZ1 POZ (BTB) and AT hook containing zinc finger 1 500388 3 3 3 1 1 0 2 0 0 0 0.84 1.00 -13041 SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 740592 4 4 4 3 3 1 0 0 0 0 0.84 1.00 -13042 KRT16 keratin 16 (focal non-epidermolytic palmoplantar keratoderma) 319440 2 2 2 0 2 0 0 0 0 0 0.84 1.00 -13043 ACTL6B actin-like 6B 292992 1 1 1 2 1 0 0 0 0 0 0.84 1.00 -13044 CYTH2 277096 1 1 1 0 0 0 1 0 0 0 0.84 1.00 -13045 TMEM143 transmembrane protein 143 298424 1 1 1 1 0 0 0 0 1 0 0.84 1.00 -13046 SNX20 sorting nexin 20 171976 1 1 1 2 1 0 0 0 0 0 0.84 1.00 -13047 ERAL1 Era G-protein-like 1 (E. coli) 303296 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -13048 CHPT1 choline phosphotransferase 1 258860 1 1 1 2 0 1 0 0 0 0 0.84 1.00 -13049 NSUN7 NOL1/NOP2/Sun domain family, member 7 331072 1 1 1 0 0 0 1 0 0 0 0.84 1.00 -13050 NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1 484508 3 3 3 2 2 0 1 0 0 0 0.84 1.00 -13051 TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 285028 1 1 1 1 0 0 1 0 0 0 0.84 1.00 -13052 EXOC1 exocyst complex component 1 617568 3 3 3 0 0 2 1 0 0 0 0.84 1.00 -13053 PODN podocan 361200 2 2 2 0 1 0 0 0 1 0 0.84 1.00 -13054 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2 288512 1 1 1 2 1 0 0 0 0 0 0.84 1.00 -13055 POTEF 594748 3 3 3 1 1 2 0 0 0 0 0.84 1.00 -13056 SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 335328 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -13057 SLC16A13 solute carrier family 16, member 13 (monocarboxylic acid transporter 13) 290528 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -13058 FKBP8 FK506 binding protein 8, 38kDa 278604 2 2 2 1 2 0 0 0 0 0 0.84 1.00 -13059 HOXA3 homeobox A3 252588 3 2 3 1 1 2 0 0 0 0 0.84 1.00 -13060 OPN1LW opsin 1 (cone pigments), long-wave-sensitive 196200 1 1 1 3 1 0 0 0 0 0 0.84 1.00 -13061 CAGE1 cancer antigen 1 420064 1 1 1 1 0 0 0 0 1 0 0.84 1.00 -13062 NAPSA napsin A aspartic peptidase 281988 1 1 1 1 1 0 0 0 0 0 0.84 1.00 -13063 PCDHA8 protocadherin alpha 8 626696 8 6 8 2 7 0 1 0 0 0 0.84 1.00 -13064 SEC61A2 Sec61 alpha 2 subunit (S. cerevisiae) 335344 1 1 1 1 1 0 0 0 0 0 0.84 1.00 -13065 NAF1 nuclear assembly factor 1 homolog (S. cerevisiae) 304512 1 1 1 0 0 0 0 0 1 0 0.84 1.00 -13066 TMEM206 transmembrane protein 206 243040 1 1 1 3 0 1 0 0 0 0 0.85 1.00 -13067 C20orf194 chromosome 20 open reading frame 194 795760 9 3 9 1 1 4 2 0 0 2 0.85 1.00 -13068 RFWD3 ring finger and WD repeat domain 3 531300 2 2 2 1 1 0 1 0 0 0 0.85 1.00 -13069 NEUROD2 neurogenic differentiation 2 189216 1 1 1 1 0 0 1 0 0 0 0.85 1.00 -13070 TINF2 TERF1 (TRF1)-interacting nuclear factor 2 310352 1 1 1 1 0 1 0 0 0 0 0.85 1.00 -13071 TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 206080 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13072 PARP10 poly (ADP-ribose) polymerase family, member 10 630256 4 4 4 1 3 1 0 0 0 0 0.85 1.00 -13073 MYH6 myosin, heavy chain 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1) 1321460 12 8 12 4 5 4 3 0 0 0 0.85 1.00 -13074 DDX25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 256488 1 1 1 1 0 1 0 0 0 0 0.85 1.00 -13075 BEND4 243360 2 1 2 0 0 1 1 0 0 0 0.85 1.00 -13076 PLEK2 pleckstrin 2 235648 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13077 ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 230820 2 1 2 0 1 1 0 0 0 0 0.85 1.00 -13078 IGSF22 immunoglobulin superfamily, member 22 624960 3 3 3 2 2 1 0 0 0 0 0.85 1.00 -13079 RUFY1 RUN and FYVE domain containing 1 413336 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13080 COPS3 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) 295680 2 1 2 1 0 1 1 0 0 0 0.85 1.00 -13081 DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1 224112 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13082 MLYCD malonyl-CoA decarboxylase 240492 1 1 1 0 0 0 0 1 0 0 0.85 1.00 -13083 PIGO phosphatidylinositol glycan anchor biosynthesis, class O 734972 3 3 3 4 1 1 0 0 1 0 0.85 1.00 -13084 NUDT19 nudix (nucleoside diphosphate linked moiety X)-type motif 19 158088 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13085 ACTRT2 actin-related protein T2 219044 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13086 C4orf14 chromosome 4 open reading frame 14 436236 2 2 2 0 0 1 0 0 1 0 0.85 1.00 -13087 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 199192 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13088 MDM1 Mdm1 nuclear protein homolog (mouse) 493416 2 2 2 1 0 2 0 0 0 0 0.85 1.00 -13089 CCNDBP1 cyclin D-type binding-protein 1 237356 2 1 2 2 2 0 0 0 0 0 0.85 1.00 -13090 TXNIP thioredoxin interacting protein 270592 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13091 RBM34 RNA binding motif protein 34 300608 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13092 KDM1A 544740 3 3 3 1 2 0 1 0 0 0 0.85 1.00 -13093 SLC33A1 solute carrier family 33 (acetyl-CoA transporter), member 1 373968 2 2 1 3 2 0 0 0 0 0 0.85 1.00 -13094 ARSK arylsulfatase family, member K 368032 3 1 3 0 0 2 0 0 1 0 0.85 1.00 -13095 SMAD5 SMAD family member 5 318304 1 1 1 2 0 0 1 0 0 0 0.85 1.00 -13096 IL11RA interleukin 11 receptor, alpha 295904 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13097 OXCT2 3-oxoacid CoA transferase 2 195104 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13098 DGCR8 DiGeorge syndrome critical region gene 8 525560 3 3 3 2 0 2 1 0 0 0 0.85 1.00 -13099 ANKZF1 ankyrin repeat and zinc finger domain containing 1 500192 3 3 3 0 2 0 1 0 0 0 0.85 1.00 -13100 AP3M1 adaptor-related protein complex 3, mu 1 subunit 288736 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13101 SAG S-antigen; retina and pineal gland (arrestin) 286272 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13102 HOXB4 homeobox B4 128996 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13103 PARD3B par-3 partitioning defective 3 homolog B (C. elegans) 795740 4 3 4 2 2 1 0 0 1 0 0.85 1.00 -13104 PANK1 pantothenate kinase 1 303520 2 2 2 1 1 1 0 0 0 0 0.85 1.00 -13105 WDR44 WD repeat domain 44 632128 3 3 3 1 2 1 0 0 0 0 0.85 1.00 -13106 PLCE1 phospholipase C, epsilon 1 1639456 9 7 9 2 2 4 1 0 2 0 0.85 1.00 -13107 KIAA1530 KIAA1530 431064 2 2 2 0 0 0 1 0 1 0 0.85 1.00 -13108 SLC29A4 solute carrier family 29 (nucleoside transporters), member 4 313848 1 1 1 0 0 0 0 0 1 0 0.85 1.00 -13109 ANKH ankylosis, progressive homolog (mouse) 342048 3 2 3 1 2 1 0 0 0 0 0.85 1.00 -13110 SLC9A5 solute carrier family 9 (sodium/hydrogen exchanger), member 5 586620 2 2 2 1 0 0 1 0 1 0 0.85 1.00 -13111 TMEM87A transmembrane protein 87A 391552 1 1 1 0 0 0 1 0 0 0 0.85 1.00 -13112 THSD1 thrombospondin, type I, domain containing 1 576800 3 3 3 2 2 1 0 0 0 0 0.85 1.00 -13113 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2 271612 1 1 1 1 0 0 1 0 0 0 0.85 1.00 -13114 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 497248 2 2 2 0 1 1 0 0 0 0 0.85 1.00 -13115 ACTR6 ARP6 actin-related protein 6 homolog (yeast) 276640 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13116 SPTBN2 spectrin, beta, non-erythrocytic 2 1450008 12 11 12 3 7 4 1 0 0 0 0.85 1.00 -13117 ADC arginine decarboxylase 317856 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13118 FBXL5 F-box and leucine-rich repeat protein 5 455168 2 2 2 1 2 0 0 0 0 0 0.85 1.00 -13119 LMAN1L lectin, mannose-binding, 1 like 339624 1 1 1 2 0 1 0 0 0 0 0.85 1.00 -13120 WNT4 wingless-type MMTV integration site family, member 4 215236 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13121 ZRSR2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 316616 1 1 1 1 0 1 0 0 0 0 0.85 1.00 -13122 WDR19 WD repeat domain 19 896128 4 3 4 2 1 1 2 0 0 0 0.85 1.00 -13123 SLC3A2 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 358928 2 2 2 0 2 0 0 0 0 0 0.85 1.00 -13124 SPO11 SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) 278432 1 1 1 3 1 0 0 0 0 0 0.85 1.00 -13125 OGFOD1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 376544 1 1 1 0 0 0 1 0 0 0 0.85 1.00 -13126 KIF20A kinesin family member 20A 614880 3 3 3 0 1 1 1 0 0 0 0.85 1.00 -13127 PRPF6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) 648648 3 3 3 2 1 1 0 0 1 0 0.85 1.00 -13128 C1QTNF6 C1q and tumor necrosis factor related protein 6 173880 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13129 RDH13 retinol dehydrogenase 13 (all-trans/9-cis) 201180 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13130 ZNF225 zinc finger protein 225 478688 3 2 3 0 0 2 1 0 0 0 0.85 1.00 -13131 NT5C1A 5'-nucleotidase, cytosolic IA 244692 1 1 1 2 1 0 0 0 0 0 0.85 1.00 -13132 SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 258720 1 1 1 2 1 0 0 0 0 0 0.85 1.00 -13133 LGI3 leucine-rich repeat LGI family, member 3 344568 2 2 2 1 1 1 0 0 0 0 0.85 1.00 -13134 EPHB6 EPH receptor B6 675196 4 4 4 1 1 1 2 0 0 0 0.85 1.00 -13135 UMODL1 uromodulin-like 1 923260 5 5 5 0 3 1 0 0 1 0 0.85 1.00 -13136 ALOX12B arachidonate 12-lipoxygenase, 12R type 446536 2 2 2 2 0 2 0 0 0 0 0.85 1.00 -13137 VAT1L 248128 1 1 1 4 0 1 0 0 0 0 0.85 1.00 -13138 FIBCD1 fibrinogen C domain containing 1 189084 1 1 1 2 0 0 1 0 0 0 0.85 1.00 -13139 PAX1 paired box 1 219604 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13140 SPRYD3 SPRY domain containing 3 302792 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13141 HS1BP3 HCLS1 binding protein 3 262304 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13142 CACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit 1501504 9 7 9 4 4 3 0 0 2 0 0.85 1.00 -13143 PSMC4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 291424 1 1 1 2 0 1 0 0 0 0 0.85 1.00 -13144 ALG3 asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase) 292376 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13145 FLT3 fms-related tyrosine kinase 3 678944 5 4 5 3 1 3 1 0 0 0 0.85 1.00 -13146 MTMR3 myotubularin related protein 3 828464 4 4 4 2 1 1 2 0 0 0 0.85 1.00 -13147 SEPT1 septin 1 253596 1 1 1 2 0 1 0 0 0 0 0.85 1.00 -13148 SCLY selenocysteine lyase 278880 1 1 1 5 0 1 0 0 0 0 0.85 1.00 -13149 MBOAT7 membrane bound O-acyltransferase domain containing 7 237704 1 1 1 0 0 0 1 0 0 0 0.85 1.00 -13150 FOXS1 forkhead box S1 220724 1 1 1 2 0 1 0 0 0 0 0.85 1.00 -13151 PDLIM7 PDZ and LIM domain 7 (enigma) 268900 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13152 BCAS3 breast carcinoma amplified sequence 3 645792 3 3 3 1 1 2 0 0 0 0 0.85 1.00 -13153 HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 1834336 9 6 9 2 3 2 3 0 1 0 0.85 1.00 -13154 XYLT2 xylosyltransferase II 506292 2 2 2 2 0 1 0 0 1 0 0.85 1.00 -13155 DCAF15 353844 1 1 1 0 0 0 0 0 1 0 0.85 1.00 -13156 DET1 de-etiolated homolog 1 (Arabidopsis) 382144 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13157 RNF113A ring finger protein 113A 229460 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13158 DEPDC1 DEP domain containing 1 556416 2 2 2 1 0 1 1 0 0 0 0.85 1.00 -13159 SHC3 SHC (Src homology 2 domain containing) transforming protein 3 332080 1 1 1 3 0 0 1 0 0 0 0.85 1.00 -13160 CCNJL cyclin J-like 265216 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13161 BPTF bromodomain PHD finger transcription factor 1974908 11 8 11 6 4 2 3 0 0 2 0.85 1.00 -13162 GPR88 G protein-coupled receptor 88 132220 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13163 PSIP1 PC4 and SFRS1 interacting protein 1 376768 1 1 1 3 0 0 1 0 0 0 0.85 1.00 -13164 KIAA1274 KIAA1274 575468 2 2 2 1 0 0 1 0 1 0 0.85 1.00 -13165 ZC3H4 zinc finger CCCH-type containing 4 768780 4 4 4 2 2 0 1 1 0 0 0.85 1.00 -13166 TNIP1 TNFAIP3 interacting protein 1 442960 2 2 2 0 1 1 0 0 0 0 0.85 1.00 -13167 GALNT12 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) 315060 2 2 2 1 1 1 0 0 0 0 0.85 1.00 -13168 POLDIP2 polymerase (DNA-directed), delta interacting protein 2 218752 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13169 CCDC51 coiled-coil domain containing 51 274176 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -13170 KIF3C kinesin family member 3C 540736 3 3 3 2 1 2 0 0 0 0 0.85 1.00 -13171 APOL3 apolipoprotein L, 3 273504 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -13172 RBP3 retinol binding protein 3, interstitial 668528 4 4 4 3 1 2 0 0 1 0 0.85 1.00 -13173 TMPRSS2 transmembrane protease, serine 2 316288 2 2 2 0 0 2 0 0 0 0 0.85 1.00 -13174 APEX2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 353328 1 1 1 3 0 0 1 0 0 0 0.85 1.00 -13175 FMNL2 formin-like 2 729640 4 3 4 1 2 1 1 0 0 0 0.85 1.00 -13176 GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) 290780 1 1 1 1 1 0 0 0 0 0 0.85 1.00 -13177 ZACN zinc activated ligand-gated ion channel 274344 1 1 1 0 0 0 1 0 0 0 0.85 1.00 -13178 CYP2U1 cytochrome P450, family 2, subfamily U, polypeptide 1 284628 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13179 TRIM72 tripartite motif-containing 72 175712 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -13180 SLC25A23 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 307476 1 1 1 5 0 1 0 0 0 0 0.86 1.00 -13181 SERINC2 serine incorporator 2 296604 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -13182 AGGF1 angiogenic factor with G patch and FHA domains 1 486892 2 2 2 0 0 2 0 0 0 0 0.86 1.00 -13183 SC65 231000 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13184 TTC39A 393112 2 2 2 2 2 0 0 0 0 0 0.86 1.00 -13185 PTAFR platelet-activating factor receptor 231392 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13186 SPATA5 spermatogenesis associated 5 615104 3 3 3 3 0 2 1 0 0 0 0.86 1.00 -13187 DDX43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 450464 1 1 1 2 0 1 0 0 0 0 0.86 1.00 -13188 SQRDL sulfide quinone reductase-like (yeast) 306512 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13189 TGFBRAP1 transforming growth factor, beta receptor associated protein 1 588448 4 4 4 1 1 3 0 0 0 0 0.86 1.00 -13190 TOE1 target of EGR1, member 1 (nuclear) 349804 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13191 ARHGAP17 Rho GTPase activating protein 17 592416 3 3 3 1 0 2 1 0 0 0 0.86 1.00 -13192 KIAA1210 1161256 8 6 8 1 1 3 3 1 0 0 0.86 1.00 -13193 ZIC2 Zic family member 2 (odd-paired homolog, Drosophila) 185136 1 1 1 1 0 0 1 0 0 0 0.86 1.00 -13194 LAX1 lymphocyte transmembrane adaptor 1 272608 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13195 NANS N-acetylneuraminic acid synthase (sialic acid synthase) 247296 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -13196 CAPN11 calpain 11 470312 2 2 2 1 0 2 0 0 0 0 0.86 1.00 -13197 PANX2 pannexin 2 187320 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13198 ARID3B AT rich interactive domain 3B (BRIGHT-like) 384160 2 2 2 0 0 1 1 0 0 0 0.86 1.00 -13199 DOCK1 dedicator of cytokinesis 1 1151388 7 6 6 3 4 1 2 0 0 0 0.86 1.00 -13200 PLEKHG6 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 507112 2 2 2 1 1 1 0 0 0 0 0.86 1.00 -13201 FDXACB1 416364 2 2 2 1 0 1 1 0 0 0 0.86 1.00 -13202 NKAP NFKB activating protein 287124 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13203 SEC24C SEC24 related gene family, member C (S. cerevisiae) 755552 3 3 3 0 1 0 2 0 0 0 0.86 1.00 -13204 PROM1 prominin 1 572608 3 3 3 1 1 1 1 0 0 0 0.86 1.00 -13205 NEK9 NIMA (never in mitosis gene a)- related kinase 9 628320 2 2 2 2 1 0 0 0 1 0 0.86 1.00 -13206 CUX2 cut-like homeobox 2 871472 7 6 7 1 4 1 1 0 1 0 0.86 1.00 -13207 TBC1D14 TBC1 domain family, member 14 464464 3 3 3 1 2 0 1 0 0 0 0.86 1.00 -13208 IRAK1 interleukin-1 receptor-associated kinase 1 382028 1 1 1 0 0 0 0 0 1 0 0.86 1.00 -13209 MGLL monoglyceride lipase 214368 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13210 ADAMTSL5 ADAMTS-like 5 232856 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13211 SLC6A7 solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 431984 2 2 2 0 1 0 1 0 0 0 0.86 1.00 -13212 BLNK B-cell linker 322336 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13213 ONECUT1 one cut homeobox 1 290432 1 1 1 2 1 0 0 0 0 0 0.86 1.00 -13214 UMPS uridine monophosphate synthetase 328608 1 1 1 1 0 0 1 0 0 0 0.86 1.00 -13215 NAGA N-acetylgalactosaminidase, alpha- 283212 1 1 1 1 0 0 1 0 0 0 0.86 1.00 -13216 GLDC glycine dehydrogenase (decarboxylating) 673512 3 3 3 2 1 1 0 0 1 0 0.86 1.00 -13217 CHAF1A chromatin assembly factor 1, subunit A (p150) 625980 5 4 5 0 1 2 2 0 0 0 0.86 1.00 -13218 GMDS GDP-mannose 4,6-dehydratase 236768 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -13219 PPP1R15B protein phosphatase 1, regulatory (inhibitor) subunit 15B 481600 2 2 2 1 0 2 0 0 0 0 0.86 1.00 -13220 TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 1274028 7 6 7 2 2 3 2 0 0 0 0.86 1.00 -13221 ANKLE2 ankyrin repeat and LEM domain containing 2 559452 4 4 4 0 2 2 0 0 0 0 0.86 1.00 -13222 SULT2B1 sulfotransferase family, cytosolic, 2B, member 1 243756 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13223 DEDD death effector domain containing 217952 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13224 KCNA7 potassium voltage-gated channel, shaker-related subfamily, member 7 249480 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -13225 EXO1 exonuclease 1 580832 2 2 2 1 1 1 0 0 0 0 0.86 1.00 -13226 C11orf2 chromosome 11 open reading frame2 359980 1 1 1 0 0 0 0 0 1 0 0.86 1.00 -13227 GPR162 G protein-coupled receptor 162 377020 2 2 2 1 1 1 0 0 0 0 0.86 1.00 -13228 MYOF 1421536 10 7 10 4 4 2 3 0 1 0 0.86 1.00 -13229 P4HA1 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I 388864 1 1 1 2 0 0 1 0 0 0 0.86 1.00 -13230 ACADVL acyl-Coenzyme A dehydrogenase, very long chain 417852 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -13231 PDZD3 PDZ domain containing 3 298812 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13232 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 272384 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13233 PDGFRL platelet-derived growth factor receptor-like 258048 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -13234 ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 1040416 5 5 5 2 0 5 0 0 0 0 0.86 1.00 -13235 MEX3B mex-3 homolog B (C. elegans) 329188 2 2 2 3 1 0 0 0 1 0 0.86 1.00 -13236 C19orf28 chromosome 19 open reading frame 28 253432 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -13237 DCTN4 dynactin 4 (p62) 321440 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13238 GNB5 guanine nucleotide binding protein (G protein), beta 5 276864 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13239 FOXA1 forkhead box A1 245056 1 1 1 1 0 0 1 0 0 0 0.86 1.00 -13240 VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) 3011232 17 13 17 8 6 6 4 0 1 0 0.86 1.00 -13241 PPP2R1B protein phosphatase 2 (formerly 2A), regulatory subunit A, beta isoform 467936 2 2 2 0 0 1 1 0 0 0 0.86 1.00 -13242 SMG6 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) 947576 5 5 5 2 3 1 1 0 0 0 0.86 1.00 -13243 ADCK2 aarF domain containing kinase 2 404656 2 2 2 0 1 0 1 0 0 0 0.86 1.00 -13244 PNCK pregnancy upregulated non-ubiquitously expressed CaM kinase 252268 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -13245 GDF2 growth differentiation factor 2 277872 1 1 1 3 1 0 0 0 0 0 0.86 1.00 -13246 INO80D 694936 2 2 2 1 0 1 0 0 1 0 0.86 1.00 -13247 CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 350336 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13248 TRIO triple functional domain (PTPRF interacting) 1929792 13 10 12 6 6 2 5 0 0 0 0.86 1.00 -13249 KNTC1 kinetochore associated 1 1515592 10 6 10 3 4 2 2 0 2 0 0.86 1.00 -13250 THRA thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) 355908 2 2 2 0 1 0 1 0 0 0 0.86 1.00 -13251 NLN neurolysin (metallopeptidase M3 family) 485408 3 2 3 1 2 0 1 0 0 0 0.86 1.00 -13252 CAMK2A calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha 338144 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -13253 KRT12 keratin 12 (Meesmann corneal dystrophy) 339808 2 2 2 0 1 1 0 0 0 0 0.86 1.00 -13254 HBS1L HBS1-like (S. cerevisiae) 476448 2 2 2 1 2 0 0 0 0 0 0.86 1.00 -13255 ACSS1 acyl-CoA synthetase short-chain family member 1 439544 3 2 3 2 2 1 0 0 0 0 0.86 1.00 -13256 CHRNA7 cholinergic receptor, nicotinic, alpha 7 219396 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -13257 IPO4 importin 4 736960 4 4 4 1 3 1 0 0 0 0 0.86 1.00 -13258 EGF epidermal growth factor (beta-urogastrone) 833280 3 3 3 1 1 0 2 0 0 0 0.86 1.00 -13259 F12 coagulation factor XII (Hageman factor) 305700 2 2 2 0 1 0 1 0 0 0 0.86 1.00 -13260 TRIM50 tripartite motif-containing 50 302880 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -13261 IHH Indian hedgehog homolog (Drosophila) 227360 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13262 CNN2 calponin 2 156408 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13263 SLC29A2 solute carrier family 29 (nucleoside transporters), member 2 296456 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -13264 KLHL12 kelch-like 12 (Drosophila) 380800 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13265 ADCY7 adenylate cyclase 7 685264 4 4 4 2 3 0 0 0 1 0 0.86 1.00 -13266 ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 650804 2 2 2 0 0 1 0 0 1 0 0.86 1.00 -13267 CCR6 chemokine (C-C motif) receptor 6 253792 2 1 2 0 1 1 0 0 0 0 0.86 1.00 -13268 TACR2 tachykinin receptor 2 264728 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13269 C1orf65 chromosome 1 open reading frame 65 361228 2 2 2 2 1 1 0 0 0 0 0.86 1.00 -13270 NUP153 nucleoporin 153kDa 1011332 4 4 4 3 1 2 1 0 0 0 0.86 1.00 -13271 C18orf25 chromosome 18 open reading frame 25 275072 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13272 SF3A3 splicing factor 3a, subunit 3, 60kDa 351896 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13273 CDC37 cell division cycle 37 homolog (S. cerevisiae) 261856 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13274 KBTBD5 kelch repeat and BTB (POZ) domain containing 5 387576 3 3 3 0 2 1 0 0 0 0 0.86 1.00 -13275 TBC1D22B TBC1 domain family, member 22B 351000 1 1 1 1 0 0 1 0 0 0 0.86 1.00 -13276 EXOC8 exocyst complex component 8 462056 2 2 2 0 0 1 1 0 0 0 0.86 1.00 -13277 EIF4B eukaryotic translation initiation factor 4B 424704 2 2 2 0 1 0 0 0 1 0 0.86 1.00 -13278 HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 496972 3 2 3 2 0 1 1 0 1 0 0.86 1.00 -13279 TCN1 transcobalamin I (vitamin B12 binding protein, R binder family) 299712 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13280 CCDC67 coiled-coil domain containing 67 411544 1 1 1 0 0 1 0 0 0 0 0.86 1.00 -13281 TSPYL2 TSPY-like 2 388236 2 2 2 0 0 2 0 0 0 0 0.86 1.00 -13282 CD14 CD14 molecule 252616 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -13283 DDB2 damage-specific DNA binding protein 2, 48kDa 296576 1 1 1 2 1 0 0 0 0 0 0.86 1.00 -13284 LBXCOR1 LBXCOR1 homolog (mouse) 327432 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -13285 ZNF512B zinc finger protein 512B 518920 3 3 3 0 3 0 0 0 0 0 0.86 1.00 -13286 GNA13 guanine nucleotide binding protein (G protein), alpha 13 256172 2 1 2 2 1 1 0 0 0 0 0.86 1.00 -13287 EZR ezrin 406112 2 2 2 0 2 0 0 0 0 0 0.86 1.00 -13288 INADL InaD-like (Drosophila) 1248576 5 5 5 2 0 2 2 0 1 0 0.86 1.00 -13289 KCNN1 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 306068 2 2 2 1 1 1 0 0 0 0 0.86 1.00 -13290 ZBTB8A 299712 1 1 1 1 0 1 0 0 0 0 0.86 1.00 -13291 PLXNA3 plexin A3 1061872 4 4 3 0 1 0 1 0 2 0 0.87 1.00 -13292 DPH2 DPH2 homolog (S. cerevisiae) 326768 1 1 1 1 0 1 0 0 0 0 0.87 1.00 -13293 CHPF chondroitin polymerizing factor 461920 3 3 3 0 2 0 1 0 0 0 0.87 1.00 -13294 TRAM2 translocation associated membrane protein 2 259168 1 1 1 0 0 0 1 0 0 0 0.87 1.00 -13295 POLD1 polymerase (DNA directed), delta 1, catalytic subunit 125kDa 666696 5 5 5 2 3 2 0 0 0 0 0.87 1.00 -13296 KCNH6 potassium voltage-gated channel, subfamily H (eag-related), member 6 646408 5 4 5 1 3 1 0 0 1 0 0.87 1.00 -13297 KLF10 Kruppel-like factor 10 326536 1 1 1 1 0 1 0 0 0 0 0.87 1.00 -13298 ATOH8 atonal homolog 8 (Drosophila) 128184 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13299 USP36 ubiquitin specific peptidase 36 744440 5 5 5 2 4 1 0 0 0 0 0.87 1.00 -13300 SLC25A32 solute carrier family 25, member 32 214424 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -13301 PPIP5K1 324716 1 1 1 1 0 1 0 0 0 0 0.87 1.00 -13302 SLFNL1 schlafen-like 1 237148 1 1 1 2 0 0 1 0 0 0 0.87 1.00 -13303 SMCR7L Smith-Magenis syndrome chromosome region, candidate 7-like 306404 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -13304 ZNF189 zinc finger protein 189 424032 1 1 1 1 0 0 0 0 1 0 0.87 1.00 -13305 SH2B3 SH2B adaptor protein 3 244860 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13306 STARD8 StAR-related lipid transfer (START) domain containing 8 704996 3 3 3 0 2 0 0 0 1 0 0.87 1.00 -13307 MKL1 megakaryoblastic leukemia (translocation) 1 565520 2 2 2 1 1 0 0 0 1 0 0.87 1.00 -13308 PTPRA protein tyrosine phosphatase, receptor type, A 558432 2 2 2 1 0 0 2 0 0 0 0.87 1.00 -13309 NARFL nuclear prelamin A recognition factor-like 241192 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -13310 MAML2 mastermind-like 2 (Drosophila) 693588 3 3 3 4 0 3 0 0 0 0 0.87 1.00 -13311 HPX hemopexin 320096 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13312 HTRA4 HtrA serine peptidase 4 243348 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13313 ZBTB4 zinc finger and BTB domain containing 4 632712 4 3 4 0 2 2 0 0 0 0 0.87 1.00 -13314 GOLGA4 golgi autoantigen, golgin subfamily a, 4 1519504 14 7 12 3 4 7 1 0 2 0 0.87 1.00 -13315 NADSYN1 NAD synthetase 1 473728 2 2 2 1 0 1 1 0 0 0 0.87 1.00 -13316 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 635280 3 3 3 1 1 1 0 1 0 0 0.87 1.00 -13317 PITX1 paired-like homeodomain 1 178080 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13318 KCNJ4 potassium inwardly-rectifying channel, subfamily J, member 4 231896 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13319 SNRNP70 186880 2 1 2 0 1 1 0 0 0 0 0.87 1.00 -13320 CDC42EP4 CDC42 effector protein (Rho GTPase binding) 4 231476 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13321 MPND MPN domain containing 232348 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13322 GLMN glomulin, FKBP associated protein 415968 1 1 1 1 0 0 1 0 0 0 0.87 1.00 -13323 SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 273384 1 1 1 3 1 0 0 0 0 0 0.87 1.00 -13324 IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon 485056 4 3 4 2 1 3 0 0 0 0 0.87 1.00 -13325 NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 314920 2 2 2 0 2 0 0 0 0 0 0.87 1.00 -13326 ULK2 unc-51-like kinase 2 (C. elegans) 712152 4 3 4 0 1 1 2 0 0 0 0.87 1.00 -13327 HNRNPH2 303296 1 1 1 1 0 1 0 0 0 0 0.87 1.00 -13328 SPTBN4 spectrin, beta, non-erythrocytic 4 1255900 8 8 7 2 4 2 1 0 1 0 0.87 1.00 -13329 AFP alpha-fetoprotein 422464 2 1 2 1 0 1 1 0 0 0 0.87 1.00 -13330 SHE Src homology 2 domain containing E 283612 2 2 2 0 1 1 0 0 0 0 0.87 1.00 -13331 AMBP alpha-1-microglobulin/bikunin precursor 246176 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13332 DBX1 developing brain homeobox 1 200412 1 1 1 3 1 0 0 0 0 0 0.87 1.00 -13333 RTKN rhotekin 406784 4 2 4 2 1 2 1 0 0 0 0.87 1.00 -13334 C9orf64 chromosome 9 open reading frame 64 233408 1 1 1 3 0 1 0 0 0 0 0.87 1.00 -13335 FRMD4B FERM domain containing 4B 702120 2 2 2 1 0 0 1 0 1 0 0.87 1.00 -13336 ZNF398 zinc finger protein 398 426748 2 2 2 0 1 0 1 0 0 0 0.87 1.00 -13337 ZDHHC11 zinc finger, DHHC-type containing 11 277616 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13338 PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 430752 2 2 2 0 1 0 1 0 0 0 0.87 1.00 -13339 HSPBAP1 HSPB (heat shock 27kDa) associated protein 1 335776 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -13340 CNTNAP3 contactin associated protein-like 3 619008 4 4 4 1 1 2 1 0 0 0 0.87 1.00 -13341 WDR74 WD repeat domain 74 252552 1 1 1 1 0 1 0 0 0 0 0.87 1.00 -13342 B3GNT8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 218120 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13343 LAMP1 lysosomal-associated membrane protein 1 274400 1 1 1 3 1 0 0 0 0 0 0.87 1.00 -13344 TRIM21 tripartite motif-containing 21 323616 1 1 1 1 0 1 0 0 0 0 0.87 1.00 -13345 UHRF2 ubiquitin-like, containing PHD and RING finger domains, 2 552524 2 2 2 0 0 0 2 0 0 0 0.87 1.00 -13346 SMO smoothened homolog (Drosophila) 450832 1 1 1 3 0 0 0 0 1 0 0.87 1.00 -13347 CACNA1G calcium channel, voltage-dependent, T type, alpha 1G subunit 1402020 11 8 11 2 4 3 3 0 1 0 0.87 1.00 -13348 LARS2 leucyl-tRNA synthetase 2, mitochondrial 625408 3 3 3 2 3 0 0 0 0 0 0.87 1.00 -13349 JPH4 junctophilin 4 199544 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13350 HSPA14 heat shock 70kDa protein 14 351184 1 1 1 2 1 0 0 0 0 0 0.87 1.00 -13351 XRRA1 X-ray radiation resistance associated 1 530040 2 2 2 2 1 1 0 0 0 0 0.87 1.00 -13352 TRIM28 tripartite motif-containing 28 480648 2 2 2 1 1 1 0 0 0 0 0.87 1.00 -13353 C9orf3 chromosome 9 open reading frame 3 488712 2 2 2 0 2 0 0 0 0 0 0.87 1.00 -13354 RGNEF 1030884 6 4 6 2 0 3 2 0 1 0 0.87 1.00 -13355 N4BP2L2 NEDD4 binding protein 2-like 2 809984 5 3 5 1 0 3 1 0 1 0 0.87 1.00 -13356 STXBP2 syntaxin binding protein 2 377960 2 2 2 0 1 0 1 0 0 0 0.87 1.00 -13357 TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 412832 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13358 BCORL1 BCL6 co-repressor-like 1 1130080 5 5 5 5 2 1 1 0 1 0 0.87 1.00 -13359 RPL3L ribosomal protein L3-like 263088 1 1 1 1 0 1 0 0 0 0 0.87 1.00 -13360 SLC6A6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 429856 2 2 2 2 1 1 0 0 0 0 0.87 1.00 -13361 GON4L gon-4-like (C. elegans) 1494368 9 7 9 1 0 7 2 0 0 0 0.87 1.00 -13362 HERC2 hect domain and RLD 2 3228476 20 14 20 13 6 5 4 0 5 0 0.87 1.00 -13363 CACNA1I calcium channel, voltage-dependent, T type, alpha 1I subunit 1011620 5 5 5 1 2 2 0 0 1 0 0.87 1.00 -13364 RGL3 ral guanine nucleotide dissociation stimulator-like 3 420824 1 1 1 2 0 0 0 0 1 0 0.87 1.00 -13365 AP2A2 adaptor-related protein complex 2, alpha 2 subunit 568180 2 2 2 1 0 0 1 0 1 0 0.87 1.00 -13366 LONP1 lon peptidase 1, mitochondrial 567140 4 4 4 0 3 0 1 0 0 0 0.87 1.00 -13367 MKS1 Meckel syndrome, type 1 381024 2 1 2 1 0 0 0 0 0 2 0.87 1.00 -13368 P2RX2 purinergic receptor P2X, ligand-gated ion channel, 2 301192 2 2 2 0 2 0 0 0 0 0 0.87 1.00 -13369 BAT1 HLA-B associated transcript 1 239624 1 1 1 1 0 0 1 0 0 0 0.87 1.00 -13370 GYS1 glycogen synthase 1 (muscle) 472128 2 2 2 1 0 0 1 0 1 0 0.87 1.00 -13371 CPNE9 copine family member IX 383488 2 2 2 0 0 1 0 1 0 0 0.87 1.00 -13372 NBPF1 neuroblastoma breakpoint family, member 1 701092 3 2 3 1 0 2 1 0 0 0 0.87 1.00 -13373 ATF7 activating transcription factor 7 336896 1 1 1 2 0 1 0 0 0 0 0.87 1.00 -13374 PDE4C phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila) 452256 2 2 2 0 1 1 0 0 0 0 0.87 1.00 -13375 PRUNE prune homolog (Drosophila) 312256 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -13376 BAG3 BCL2-associated athanogene 3 366016 1 1 1 2 1 0 0 0 0 0 0.87 1.00 -13377 SLC9A2 solute carrier family 9 (sodium/hydrogen exchanger), member 2 539336 2 2 2 1 0 2 0 0 0 0 0.87 1.00 -13378 ADCY9 adenylate cyclase 9 870164 6 5 6 4 4 1 0 0 1 0 0.87 1.00 -13379 TBC1D2B TBC1 domain family, member 2B 543344 4 3 4 2 4 0 0 0 0 0 0.87 1.00 -13380 ZNF239 zinc finger protein 239 309344 2 1 2 3 1 1 0 0 0 0 0.87 1.00 -13381 CLCNKA chloride channel Ka 435228 1 1 1 1 0 0 0 0 1 0 0.87 1.00 -13382 CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 1390920 17 10 16 7 10 5 1 0 1 0 0.87 1.00 -13383 LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) 263788 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13384 NOP2 557088 3 3 3 2 2 0 0 0 1 0 0.87 1.00 -13385 LHX4 LIM homeobox 4 268128 1 1 1 0 0 0 1 0 0 0 0.87 1.00 -13386 C6orf142 chromosome 6 open reading frame 142 320096 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13387 SLC29A1 solute carrier family 29 (nucleoside transporters), member 1 317856 1 1 1 1 0 0 1 0 0 0 0.87 1.00 -13388 ERI3 223524 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13389 PHLDA1 pleckstrin homology-like domain, family A, member 1 196384 1 1 1 0 0 0 1 0 0 0 0.87 1.00 -13390 CDC42BPB CDC42 binding protein kinase beta (DMPK-like) 1095172 7 5 7 1 2 3 0 0 2 0 0.87 1.00 -13391 PDCD4 programmed cell death 4 (neoplastic transformation inhibitor) 328832 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -13392 TMEM26 transmembrane protein 26 252840 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13393 DAZAP1 DAZ associated protein 1 272012 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -13394 AURKB aurora kinase B 239008 1 1 1 1 1 0 0 0 0 0 0.87 1.00 -13395 TTC12 tetratricopeptide repeat domain 12 492024 2 2 2 4 0 2 0 0 0 0 0.87 1.00 -13396 HK2 hexokinase 2 618064 3 3 3 2 0 3 0 0 0 0 0.87 1.00 -13397 TMEM8B 363392 2 2 2 0 1 1 0 0 0 0 0.87 1.00 -13398 TADA2B 223812 1 1 1 2 1 0 0 0 0 0 0.87 1.00 -13399 CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43 351008 2 1 2 1 0 2 0 0 0 0 0.87 1.00 -13400 FAM22G family with sequence similarity 22, member G 305616 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -13401 URGCP 618380 3 3 3 0 1 1 1 0 0 0 0.88 1.00 -13402 MC3R melanocortin 3 receptor 218624 1 1 1 2 1 0 0 0 0 0 0.88 1.00 -13403 KIAA1383 KIAA1383 659088 5 4 5 1 1 2 2 0 0 0 0.88 1.00 -13404 DCAF10 297220 1 1 1 1 1 0 0 0 0 0 0.88 1.00 -13405 ZUFSP zinc finger with UFM1-specific peptidase domain 397152 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13406 ASAP2 679864 3 3 3 3 2 0 0 0 1 0 0.88 1.00 -13407 RFPL2 ret finger protein-like 2 276504 1 1 1 2 0 0 1 0 0 0 0.88 1.00 -13408 POC1A 279104 1 1 1 0 0 0 1 0 0 0 0.88 1.00 -13409 OPN3 opsin 3 255276 1 1 1 4 1 0 0 0 0 0 0.88 1.00 -13410 LRG1 leucine-rich alpha-2-glycoprotein 1 226156 1 1 1 3 1 0 0 0 0 0 0.88 1.00 -13411 KBTBD10 kelch repeat and BTB (POZ) domain containing 10 413280 4 1 4 1 2 1 0 0 1 0 0.88 1.00 -13412 PRMT2 protein arginine methyltransferase 2 284984 1 1 1 1 1 0 0 0 0 0 0.88 1.00 -13413 OAT ornithine aminotransferase (gyrate atrophy) 300384 1 1 1 0 0 0 1 0 0 0 0.88 1.00 -13414 VSIG10 353024 1 1 1 2 1 0 0 0 0 0 0.88 1.00 -13415 DSC2 desmocollin 2 613088 2 2 2 0 1 0 1 0 0 0 0.88 1.00 -13416 NFIX nuclear factor I/X (CCAAT-binding transcription factor) 297192 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13417 NAMPT nicotinamide phosphoribosyltransferase 340480 1 1 1 2 1 0 0 0 0 0 0.88 1.00 -13418 DMTF1 cyclin D binding myb-like transcription factor 1 525728 2 2 2 3 1 1 0 0 0 0 0.88 1.00 -13419 SGSH N-sulfoglucosamine sulfohydrolase (sulfamidase) 285732 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13420 DIDO1 death inducer-obliterator 1 1360968 12 8 12 5 3 5 3 0 1 0 0.88 1.00 -13421 OBSL1 obscurin-like 1 955584 5 5 5 2 1 0 2 0 2 0 0.88 1.00 -13422 USP20 ubiquitin specific peptidase 20 608772 4 3 4 0 3 0 0 0 1 0 0.88 1.00 -13423 DOCK8 dedicator of cytokinesis 8 1416940 9 6 9 4 5 1 2 1 0 0 0.88 1.00 -13424 PCSK7 proprotein convertase subtilisin/kexin type 7 484968 2 2 2 0 0 1 1 0 0 0 0.88 1.00 -13425 PIAS4 protein inhibitor of activated STAT, 4 297224 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13426 MSI1 musashi homolog 1 (Drosophila) 219368 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13427 FEM1A fem-1 homolog a (C. elegans) 302260 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13428 DHX15 DEAH (Asp-Glu-Ala-His) box polypeptide 15 547456 3 2 3 2 1 0 1 0 1 0 0.88 1.00 -13429 USO1 USO1 homolog, vesicle docking protein (yeast) 622552 4 2 4 2 3 1 0 0 0 0 0.88 1.00 -13430 CBL Cas-Br-M (murine) ecotropic retroviral transforming sequence 579264 5 3 5 4 3 2 0 0 0 0 0.88 1.00 -13431 SH2B1 SH2B adaptor protein 1 444080 2 2 2 0 1 0 1 0 0 0 0.88 1.00 -13432 PIM1 pim-1 oncogene 199248 1 1 1 2 1 0 0 0 0 0 0.88 1.00 -13433 C19orf29 chromosome 19 open reading frame 29 381864 3 3 3 0 3 0 0 0 0 0 0.88 1.00 -13434 MED17 mediator complex subunit 17 413616 1 1 1 1 0 0 1 0 0 0 0.88 1.00 -13435 FBN3 fibrillin 3 1819048 9 9 9 6 6 1 1 0 1 0 0.88 1.00 -13436 ATHL1 ATH1, acid trehalase-like 1 (yeast) 353552 1 1 1 1 1 0 0 0 0 0 0.88 1.00 -13437 FOXP4 forkhead box P4 419680 2 2 2 0 1 1 0 0 0 0 0.88 1.00 -13438 SCARF2 scavenger receptor class F, member 2 235836 1 1 1 0 0 0 1 0 0 0 0.88 1.00 -13439 SFRS11 splicing factor, arginine/serine-rich 11 336588 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13440 IL1RAP interleukin 1 receptor accessory protein 397152 1 1 1 0 0 0 0 0 1 0 0.88 1.00 -13441 CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit 1588816 12 10 12 7 5 5 2 0 0 0 0.88 1.00 -13442 ATP2A3 ATPase, Ca++ transporting, ubiquitous 618292 4 4 4 3 4 0 0 0 0 0 0.88 1.00 -13443 ACO2 aconitase 2, mitochondrial 540960 2 2 2 0 1 0 1 0 0 0 0.88 1.00 -13444 FAM193B 463740 1 1 1 2 0 0 0 0 1 0 0.88 1.00 -13445 RAB3IP RAB3A interacting protein (rabin3) 330400 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13446 DLGAP5 585312 3 2 3 4 0 1 1 1 0 0 0.88 1.00 -13447 EN1 engrailed homeobox 1 146860 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13448 N4BP3 266252 2 2 2 0 1 0 1 0 0 0 0.88 1.00 -13449 RPAP1 RNA polymerase II associated protein 1 952896 4 4 4 1 0 3 0 0 1 0 0.88 1.00 -13450 LOXL4 lysyl oxidase-like 4 478600 2 2 2 1 1 1 0 0 0 0 0.88 1.00 -13451 BCAT2 branched chain aminotransferase 2, mitochondrial 261264 1 1 1 1 1 0 0 0 0 0 0.88 1.00 -13452 IFI16 interferon, gamma-inducible protein 16 460992 1 1 1 0 0 0 0 1 0 0 0.88 1.00 -13453 CXXC1 CXXC finger 1 (PHD domain) 457184 2 2 2 0 2 0 0 0 0 0 0.88 1.00 -13454 BAZ2A bromodomain adjacent to zinc finger domain, 2A 1284920 10 6 10 1 5 0 4 0 1 0 0.88 1.00 -13455 TBC1D12 TBC1 domain family, member 12 328164 2 1 2 2 1 1 0 0 0 0 0.88 1.00 -13456 CCDC142 coiled-coil domain containing 142 426972 1 1 1 0 0 0 0 1 0 0 0.88 1.00 -13457 PCDH1 protocadherin 1 835404 4 4 4 0 1 0 3 0 0 0 0.88 1.00 -13458 EML4 echinoderm microtubule associated protein like 4 680512 2 2 2 2 0 0 1 0 1 0 0.88 1.00 -13459 INPP5J 301820 1 1 1 0 0 0 1 0 0 0 0.88 1.00 -13460 PTPN23 protein tyrosine phosphatase, non-receptor type 23 1041404 5 5 5 0 2 1 0 0 2 0 0.88 1.00 -13461 PUS1 pseudouridylate synthase 1 265356 1 1 1 1 0 0 1 0 0 0 0.88 1.00 -13462 SCUBE1 signal peptide, CUB domain, EGF-like 1 597088 3 3 3 1 2 1 0 0 0 0 0.88 1.00 -13463 JAK1 Janus kinase 1 (a protein tyrosine kinase) 797664 4 4 3 3 2 1 1 0 0 0 0.88 1.00 -13464 PGM2L1 phosphoglucomutase 2-like 1 431200 2 1 2 0 0 0 1 0 1 0 0.88 1.00 -13465 LGALS9C 195860 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13466 DNAJA2 DnaJ (Hsp40) homolog, subfamily A, member 2 280140 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13467 PIH1D1 PIH1 domain containing 1 203616 1 1 1 1 1 0 0 0 0 0 0.88 1.00 -13468 SLCO4A1 solute carrier organic anion transporter family, member 4A1 438900 2 2 2 0 1 0 1 0 0 0 0.88 1.00 -13469 OXSR1 oxidative-stress responsive 1 370860 1 1 1 2 0 1 0 0 0 0 0.88 1.00 -13470 ARMC5 armadillo repeat containing 5 608892 3 3 3 0 1 1 0 0 1 0 0.88 1.00 -13471 EMILIN3 elastin microfibril interfacer 3 472136 1 1 1 1 0 0 0 0 1 0 0.88 1.00 -13472 C14orf49 chromosome 14 open reading frame 49 648556 4 3 4 2 2 2 0 0 0 0 0.88 1.00 -13473 FAM78A family with sequence similarity 78, member A 188524 1 1 1 2 0 1 0 0 0 0 0.88 1.00 -13474 CBLL1 Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1 333688 2 1 2 0 0 1 1 0 0 0 0.88 1.00 -13475 DONSON downstream neighbor of SON 317184 2 1 2 2 1 1 0 0 0 0 0.88 1.00 -13476 TLE3 transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 490728 3 3 3 1 3 0 0 0 0 0 0.88 1.00 -13477 METAP2 methionyl aminopeptidase 2 331744 1 1 1 1 0 0 1 0 0 0 0.88 1.00 -13478 SLC9A3 solute carrier family 9 (sodium/hydrogen exchanger), member 3 407824 2 2 2 2 1 0 0 0 1 0 0.88 1.00 -13479 LMLN leishmanolysin-like (metallopeptidase M8 family) 455168 3 2 3 1 1 2 0 0 0 0 0.88 1.00 -13480 NTSR1 neurotensin receptor 1 (high affinity) 246876 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13481 VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 250656 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13482 RCBTB1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 367360 1 1 1 3 1 0 0 0 0 0 0.88 1.00 -13483 PLEKHH3 pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 324600 1 1 1 0 0 0 1 0 0 0 0.88 1.00 -13484 GRK7 G protein-coupled receptor kinase 7 353864 2 2 2 1 1 1 0 0 0 0 0.88 1.00 -13485 HOXB8 homeobox B8 152908 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13486 CTBP1 C-terminal binding protein 1 183668 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13487 GIT1 G protein-coupled receptor kinase interactor 1 497100 3 3 3 0 2 1 0 0 0 0 0.88 1.00 -13488 KDM2B 910056 5 5 5 3 3 0 1 1 0 0 0.88 1.00 -13489 GCM1 glial cells missing homolog 1 (Drosophila) 298144 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13490 C11orf61 chromosome 11 open reading frame 61 261744 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13491 B3GAT1 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) 178304 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13492 ETFB electron-transfer-flavoprotein, beta polypeptide 245256 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13493 ACTN4 actinin, alpha 4 572600 3 3 3 1 1 2 0 0 0 0 0.88 1.00 -13494 LRRC15 leucine rich repeat containing 15 392672 2 2 2 3 2 0 0 0 0 0 0.88 1.00 -13495 SPINT1 serine peptidase inhibitor, Kunitz type 1 347480 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13496 ITPR3 inositol 1,4,5-triphosphate receptor, type 3 1835732 12 11 12 6 8 3 1 0 0 0 0.88 1.00 -13497 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 344960 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13498 GMCL1 germ cell-less homolog 1 (Drosophila) 327948 1 1 1 2 0 1 0 0 0 0 0.88 1.00 -13499 ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like 815240 4 4 4 0 4 0 0 0 0 0 0.88 1.00 -13500 ZNF697 zinc finger protein 697 190128 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13501 CNOT2 CCR4-NOT transcription complex, subunit 2 376992 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13502 ZNF587 zinc finger protein 587 389760 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13503 CAPN12 calpain 12 368348 2 2 2 0 2 0 0 0 0 0 0.88 1.00 -13504 GDI1 GDP dissociation inhibitor 1 306796 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13505 UROD uroporphyrinogen decarboxylase 256256 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13506 KRTAP10-4 keratin associated protein 10-4 266588 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13507 SLC25A37 solute carrier family 25, member 37 215616 1 1 1 1 1 0 0 0 0 0 0.88 1.00 -13508 ACAD8 acyl-Coenzyme A dehydrogenase family, member 8 272356 1 1 1 2 0 1 0 0 0 0 0.88 1.00 -13509 NACA nascent polypeptide-associated complex alpha subunit 1243648 5 5 5 1 0 3 2 0 0 0 0.88 1.00 -13510 PSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2 302400 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -13511 FAM114A2 351680 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -13512 SLC7A5 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 299704 1 1 1 0 1 0 0 0 0 0 0.88 1.00 -13513 PPARA peroxisome proliferator-activated receptor alpha 319116 1 1 1 1 1 0 0 0 0 0 0.89 1.00 -13514 BPIL1 bactericidal/permeability-increasing protein-like 1 321752 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13515 DGKK diacylglycerol kinase, kappa 813248 5 3 5 1 2 2 0 0 1 0 0.89 1.00 -13516 TEPP 206520 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13517 CCDC130 coiled-coil domain containing 130 237720 1 1 1 2 0 1 0 0 0 0 0.89 1.00 -13518 MEF2D myocyte enhancer factor 2D 331400 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13519 TDRD9 tudor domain containing 9 630160 2 2 2 2 1 1 0 0 0 0 0.89 1.00 -13520 THAP11 THAP domain containing 11 176428 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13521 EXD2 340256 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13522 EXD3 357652 1 1 1 0 0 0 0 1 0 0 0.89 1.00 -13523 RRM1 ribonucleotide reductase M1 546792 2 2 2 0 1 1 0 0 0 0 0.89 1.00 -13524 TCTN2 tectonic family member 2 485184 2 2 2 2 1 0 1 0 0 0 0.89 1.00 -13525 MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase 260932 2 2 2 3 1 1 0 0 0 0 0.89 1.00 -13526 STAB1 stabilin 1 1526868 8 7 8 2 4 2 0 0 2 0 0.89 1.00 -13527 SCAP SREBF chaperone 697956 3 3 3 2 0 2 0 0 1 0 0.89 1.00 -13528 MRVI1 murine retrovirus integration site 1 homolog 611588 3 3 3 2 1 2 0 0 0 0 0.89 1.00 -13529 TJP2 tight junction protein 2 (zona occludens 2) 776492 5 4 5 0 4 1 0 0 0 0 0.89 1.00 -13530 NLGN4Y neuroligin 4, Y-linked 345940 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13531 FAM120A family with sequence similarity 120A 688184 5 4 5 3 1 2 0 1 1 0 0.89 1.00 -13532 IGSF3 immunoglobulin superfamily, member 3 824068 5 5 5 4 3 1 1 0 0 0 0.89 1.00 -13533 HEATR2 HEAT repeat containing 2 429436 2 2 2 2 1 1 0 0 0 0 0.89 1.00 -13534 H1FNT H1 histone family, member N, testis-specific 153152 1 1 1 1 1 0 0 0 0 0 0.89 1.00 -13535 ZNF629 zinc finger protein 629 537056 3 3 3 1 2 0 0 0 1 0 0.89 1.00 -13536 TTC38 309260 2 2 2 1 2 0 0 0 0 0 0.89 1.00 -13537 ATG9A ATG9 autophagy related 9 homolog A (S. cerevisiae) 551992 3 3 3 2 1 2 0 0 0 0 0.89 1.00 -13538 PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) 366256 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13539 C16orf89 275696 1 1 1 0 0 1 0 0 0 0 0.89 1.00 -13540 CTTNBP2 cortactin binding protein 2 1126636 10 6 9 3 5 4 1 0 0 0 0.89 1.00 -13541 CAPN13 calpain 13 465824 2 2 2 2 2 0 0 0 0 0 0.89 1.00 -13542 PARP6 poly (ADP-ribose) polymerase family, member 6 443744 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13543 PI16 peptidase inhibitor 16 298120 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13544 STK25 serine/threonine kinase 25 (STE20 homolog, yeast) 293044 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -13545 SEPT9 septin 9 459632 2 2 2 0 0 1 0 0 1 0 0.89 1.00 -13546 GPR152 G protein-coupled receptor 152 266504 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13547 ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 270872 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13548 PSPC1 paraspeckle component 1 348264 3 2 3 1 3 0 0 0 0 0 0.89 1.00 -13549 ARRB1 arrestin, beta 1 281688 1 1 1 1 1 0 0 0 0 0 0.89 1.00 -13550 CUL3 cullin 3 530880 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -13551 B3GAT3 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) 219772 1 1 1 2 0 1 0 0 0 0 0.89 1.00 -13552 SOAT2 sterol O-acyltransferase 2 344296 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13553 CHMP7 CHMP family, member 7 282148 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13554 ICAM5 intercellular adhesion molecule 5, telencephalin 380436 3 3 3 1 1 0 1 0 1 0 0.89 1.00 -13555 TERF1 telomeric repeat binding factor (NIMA-interacting) 1 290108 1 1 1 0 0 0 1 0 0 0 0.89 1.00 -13556 FLAD1 FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) 406784 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13557 SKIV2L2 superkiller viralicidic activity 2-like 2 (S. cerevisiae) 725088 4 3 4 2 0 2 2 0 0 0 0.89 1.00 -13558 CHRNA3 cholinergic receptor, nicotinic, alpha 3 345184 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13559 CLPX ClpX caseinolytic peptidase X homolog (E. coli) 427304 1 1 1 0 0 1 0 0 0 0 0.89 1.00 -13560 SPNS1 spinster homolog 1 (Drosophila) 341736 2 2 2 3 2 0 0 0 0 0 0.89 1.00 -13561 INHBB inhibin, beta B 184128 1 1 1 2 1 0 0 0 0 0 0.89 1.00 -13562 B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 381544 3 2 3 2 0 3 0 0 0 0 0.89 1.00 -13563 MTO1 mitochondrial translation optimization 1 homolog (S. cerevisiae) 473760 3 2 3 0 3 0 0 0 0 0 0.89 1.00 -13564 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 614180 7 4 7 3 3 3 1 0 0 0 0.89 1.00 -13565 UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 361312 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -13566 C2orf65 chromosome 2 open reading frame 65 362208 1 1 1 2 0 1 0 0 0 0 0.89 1.00 -13567 BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) 481824 2 2 2 0 1 0 1 0 0 0 0.89 1.00 -13568 ACTR10 actin-related protein 10 homolog (S. cerevisiae) 292544 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13569 CLPTM1L CLPTM1-like 327688 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13570 TMEM39A transmembrane protein 39A 335776 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -13571 DMBX1 diencephalon/mesencephalon homeobox 1 252532 1 1 1 2 1 0 0 0 0 0 0.89 1.00 -13572 INTS1 integrator complex subunit 1 1074556 5 4 5 3 1 0 0 0 2 2 0.89 1.00 -13573 NOC4L nucleolar complex associated 4 homolog (S. cerevisiae) 257232 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13574 ACLY ATP citrate lyase 765548 4 4 4 1 2 1 1 0 0 0 0.89 1.00 -13575 TIGD6 tigger transposable element derived 6 351596 1 1 1 0 0 1 0 0 0 0 0.89 1.00 -13576 KLHDC7A kelch domain containing 7A 459368 3 3 3 1 2 1 0 0 0 0 0.89 1.00 -13577 MUS81 MUS81 endonuclease homolog (S. cerevisiae) 322728 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -13578 UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1 363328 1 1 1 1 1 0 0 0 0 0 0.89 1.00 -13579 WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 1006432 4 4 4 1 2 0 2 0 0 0 0.89 1.00 -13580 LTBP3 latent transforming growth factor beta binding protein 3 593164 2 2 2 0 0 0 0 1 1 0 0.89 1.00 -13581 TEKT2 tektin 2 (testicular) 290472 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13582 RTN2 reticulon 2 342516 2 2 2 0 2 0 0 0 0 0 0.89 1.00 -13583 FBXL18 F-box and leucine-rich repeat protein 18 392984 2 2 2 0 1 1 0 0 0 0 0.89 1.00 -13584 FASTKD5 FAST kinase domains 5 512792 2 2 2 0 2 0 0 0 0 0 0.89 1.00 -13585 POFUT2 protein O-fucosyltransferase 2 313488 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -13586 TRIM56 tripartite motif-containing 56 409364 2 2 2 2 1 0 1 0 0 0 0.89 1.00 -13587 ATRIP ATR interacting protein 515900 1 1 1 4 0 1 0 0 0 0 0.89 1.00 -13588 PACSIN3 protein kinase C and casein kinase substrate in neurons 3 270816 1 1 1 0 1 0 0 0 0 0 0.89 1.00 -13589 USP47 ubiquitin specific peptidase 47 883880 7 4 7 1 2 2 2 0 1 0 0.89 1.00 -13590 LRRK1 leucine-rich repeat kinase 1 1335180 10 9 10 3 4 4 2 0 0 0 0.89 1.00 -13591 RNF216 ring finger protein 216 635264 3 3 3 2 0 2 1 0 0 0 0.89 1.00 -13592 TMCO7 transmembrane and coiled-coil domains 7 732928 4 3 4 1 2 1 1 0 0 0 0.89 1.00 -13593 CDK11A 310400 1 1 1 1 1 0 0 0 0 0 0.89 1.00 -13594 GORASP2 golgi reassembly stacking protein 2, 55kDa 305788 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -13595 LRRC48 leucine rich repeat containing 48 346016 1 1 1 1 0 0 1 0 0 0 0.89 1.00 -13596 RSPH3 radial spoke head 3 homolog (Chlamydomonas) 376264 1 1 1 0 0 0 0 0 1 0 0.89 1.00 -13597 EPN3 epsin 3 390292 2 2 2 1 1 1 0 0 0 0 0.89 1.00 -13598 IL22RA1 interleukin 22 receptor, alpha 1 392672 1 1 1 3 0 0 1 0 0 0 0.89 1.00 -13599 FAM83E family with sequence similarity 83, member E 245740 1 1 1 0 0 1 0 0 0 0 0.89 1.00 -13600 DDX26B DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 589600 1 1 1 3 0 1 0 0 0 0 0.89 1.00 -13601 DSE dermatan sulfate epimerase 626996 3 3 3 2 0 3 0 0 0 0 0.90 1.00 -13602 DAXX death-associated protein 6 516992 1 1 1 1 0 0 1 0 0 0 0.90 1.00 -13603 LMTK2 lemur tyrosine kinase 2 999096 8 5 8 4 4 0 2 0 2 0 0.90 1.00 -13604 CENPI centromere protein I 526624 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13605 MINA MYC induced nuclear antigen 321216 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13606 DTX3 deltex 3 homolog (Drosophila) 231000 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13607 CDK8 cyclin-dependent kinase 8 324128 1 1 1 1 0 0 1 0 0 0 0.90 1.00 -13608 SCAPER S phase cyclin A-associated protein in the ER 935656 6 4 6 1 0 4 1 0 1 0 0.90 1.00 -13609 SPATA7 spermatogenesis associated 7 408552 1 1 1 2 1 0 0 0 0 0 0.90 1.00 -13610 MYH9 myosin, heavy chain 9, non-muscle 1318856 12 10 12 4 5 5 2 0 0 0 0.90 1.00 -13611 CECR2 cat eye syndrome chromosome region, candidate 2 965464 8 5 8 4 2 5 0 0 1 0 0.90 1.00 -13612 ZFP36 zinc finger protein 36, C3H type, homolog (mouse) 210868 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13613 TOP2A topoisomerase (DNA) II alpha 170kDa 1035816 5 4 5 1 0 2 2 0 1 0 0.90 1.00 -13614 ZNF341 zinc finger protein 341 559328 2 2 2 1 1 1 0 0 0 0 0.90 1.00 -13615 C21orf29 chromosome 21 open reading frame 29 417620 3 3 3 3 1 2 0 0 0 0 0.90 1.00 -13616 HCRTR2 hypocretin (orexin) receptor 2 305312 1 1 1 5 1 0 0 0 0 0 0.90 1.00 -13617 ALDH16A1 aldehyde dehydrogenase 16 family, member A1 440112 2 2 2 1 2 0 0 0 0 0 0.90 1.00 -13618 SLC5A6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 440832 2 2 2 1 2 0 0 0 0 0 0.90 1.00 -13619 PRDM8 PR domain containing 8 239736 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13620 ATF2 activating transcription factor 2 350784 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13621 DCBLD1 discoidin, CUB and LCCL domain containing 1 350336 1 1 1 1 1 0 0 0 0 0 0.90 1.00 -13622 ZNF45 zinc finger protein 45 462560 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13623 GRHL3 grainyhead-like 3 (Drosophila) 418712 2 1 2 1 1 0 0 0 1 0 0.90 1.00 -13624 BIRC6 baculoviral IAP repeat-containing 6 (apollon) 3183064 27 10 26 4 4 9 7 0 5 2 0.90 1.00 -13625 ATP8B2 ATPase, class I, type 8B, member 2 876736 7 4 7 0 4 2 0 0 1 0 0.90 1.00 -13626 ORC3L origin recognition complex, subunit 3-like (yeast) 497056 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13627 DLST dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) 309460 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13628 ACTN1 actinin, alpha 1 634592 5 5 5 0 5 0 0 0 0 0 0.90 1.00 -13629 SEMA3G sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G 481572 4 2 4 1 4 0 0 0 0 0 0.90 1.00 -13630 PDK3 pyruvate dehydrogenase kinase, isozyme 3 278368 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13631 CHRNA4 cholinergic receptor, nicotinic, alpha 4 336376 1 1 1 1 1 0 0 0 0 0 0.90 1.00 -13632 UVRAG UV radiation resistance associated gene 447896 2 2 2 0 1 0 1 0 0 0 0.90 1.00 -13633 KRT10 keratin 10 (epidermolytic hyperkeratosis; keratosis palmaris et plantaris) 340480 2 1 2 1 2 0 0 0 0 0 0.90 1.00 -13634 RFX7 971768 4 4 4 0 1 3 0 0 0 0 0.90 1.00 -13635 GSPT2 G1 to S phase transition 2 422240 1 1 1 1 0 0 0 0 1 0 0.90 1.00 -13636 FRMD6 FERM domain containing 6 424004 4 2 4 3 1 2 1 0 0 0 0.90 1.00 -13637 ISM2 358176 1 1 1 3 0 1 0 0 0 0 0.90 1.00 -13638 POFUT1 protein O-fucosyltransferase 1 274568 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13639 CHID1 chitinase domain containing 1 261992 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13640 GPRIN1 G protein regulated inducer of neurite outgrowth 1 548128 4 2 4 1 1 2 0 0 1 0 0.90 1.00 -13641 NOMO3 NODAL modulator 3 367652 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13642 OSGIN1 oxidative stress induced growth inhibitor 1 314452 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13643 CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) 329772 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13644 FAM53C family with sequence similarity 53, member C 267680 2 1 2 1 0 2 0 0 0 0 0.90 1.00 -13645 SASH3 SAM and SH3 domain containing 3 262112 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13646 PLBD1 355488 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13647 ZNF653 zinc finger protein 653 326576 2 2 2 0 0 2 0 0 0 0 0.90 1.00 -13648 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 189868 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13649 MCM8 minichromosome maintenance complex component 8 581280 2 2 2 2 1 1 0 0 0 0 0.90 1.00 -13650 P2RX5 purinergic receptor P2X, ligand-gated ion channel, 5 295092 1 1 1 1 1 0 0 0 0 0 0.90 1.00 -13651 CDSN corneodesmosin 279488 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13652 DYRK2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 382508 1 1 1 6 0 0 1 0 0 0 0.90 1.00 -13653 DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 3157980 17 14 17 12 10 3 3 0 1 0 0.90 1.00 -13654 STOX2 storkhead box 2 599056 2 2 2 2 0 2 0 0 0 0 0.90 1.00 -13655 ABHD15 202776 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13656 MYO10 myosin X 1367344 12 8 12 7 7 4 1 0 0 0 0.90 1.00 -13657 ZNF467 zinc finger protein 467 239360 2 2 2 0 0 2 0 0 0 0 0.90 1.00 -13658 DCP1A DCP1 decapping enzyme homolog A (S. cerevisiae) 390808 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13659 HRH1 histamine receptor H1 328832 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13660 FOXF1 forkhead box F1 152992 1 1 1 2 1 0 0 0 0 0 0.90 1.00 -13661 GAS6 growth arrest-specific 6 309284 1 1 1 0 0 0 0 0 1 0 0.90 1.00 -13662 NARG2 NMDA receptor regulated 2 674016 1 1 1 1 0 0 1 0 0 0 0.90 1.00 -13663 ATOH1 atonal homolog 1 (Drosophila) 230384 1 1 1 1 0 0 1 0 0 0 0.90 1.00 -13664 CAMKK1 calcium/calmodulin-dependent protein kinase kinase 1, alpha 369040 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13665 PSD4 pleckstrin and Sec7 domain containing 4 677544 3 3 3 1 2 1 0 0 0 0 0.90 1.00 -13666 ITPRIPL2 243376 1 1 1 0 0 0 1 0 0 0 0.90 1.00 -13667 SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1 391552 1 1 1 0 0 0 1 0 0 0 0.90 1.00 -13668 EPB41 erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) 590240 3 2 3 2 0 1 2 0 0 0 0.90 1.00 -13669 C9orf117 chromosome 9 open reading frame 117 334784 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13670 FRMD1 FERM domain containing 1 347156 2 2 2 3 1 1 0 0 0 0 0.90 1.00 -13671 PRDM13 PR domain containing 13 269556 2 2 2 0 1 1 0 0 0 0 0.90 1.00 -13672 IFT140 intraflagellar transport 140 homolog (Chlamydomonas) 968776 6 5 6 6 3 0 2 0 1 0 0.90 1.00 -13673 PITPNM2 phosphatidylinositol transfer protein, membrane-associated 2 791104 5 4 5 3 2 2 1 0 0 0 0.90 1.00 -13674 NPAS1 neuronal PAS domain protein 1 296708 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13675 C6orf168 chromosome 6 open reading frame 168 272748 2 1 2 1 1 1 0 0 0 0 0.90 1.00 -13676 LMNB2 lamin B2 329700 1 1 1 1 0 0 0 0 1 0 0.90 1.00 -13677 EPHX2 epoxide hydrolase 2, cytoplasmic 380436 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13678 KIAA1751 KIAA1751 524188 3 3 3 3 2 1 0 0 0 0 0.90 1.00 -13679 TMC2 transmembrane channel-like 2 598720 2 2 2 2 2 0 0 0 0 0 0.90 1.00 -13680 FAM179A 636268 4 4 4 2 2 2 0 0 0 0 0.90 1.00 -13681 SR140 692360 3 3 3 2 2 1 0 0 0 0 0.90 1.00 -13682 MTA3 metastasis associated 1 family, member 3 347504 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -13683 CCT2 chaperonin containing TCP1, subunit 2 (beta) 373576 1 1 1 0 0 0 1 0 0 0 0.90 1.00 -13684 FAM129B family with sequence similarity 129, member B 498204 3 3 3 1 3 0 0 0 0 0 0.90 1.00 -13685 BCAR3 breast cancer anti-estrogen resistance 3 564928 2 2 2 1 0 2 0 0 0 0 0.90 1.00 -13686 TMC4 transmembrane channel-like 4 459112 3 3 3 1 2 1 0 0 0 0 0.90 1.00 -13687 KCNG3 potassium voltage-gated channel, subfamily G, member 3 214004 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13688 TMC7 transmembrane channel-like 7 484960 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13689 USP49 ubiquitin specific peptidase 49 389648 2 2 2 1 1 0 1 0 0 0 0.90 1.00 -13690 PURB purine-rich element binding protein B 134036 1 1 1 1 1 0 0 0 0 0 0.90 1.00 -13691 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 518892 1 1 1 0 0 0 1 0 0 0 0.90 1.00 -13692 EIF5B eukaryotic translation initiation factor 5B 841384 4 3 4 1 2 1 0 0 1 0 0.90 1.00 -13693 ZFYVE27 zinc finger, FYVE domain containing 27 287428 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13694 SYNRG 885248 2 2 2 2 0 1 0 0 1 0 0.90 1.00 -13695 SLC13A5 solute carrier family 13 (sodium-dependent citrate transporter), member 5 393120 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13696 CHD1L chromodomain helicase DNA binding protein 1-like 596960 2 2 2 2 1 1 0 0 0 0 0.90 1.00 -13697 SHANK3 SH3 and multiple ankyrin repeat domains 3 454108 3 2 3 0 2 1 0 0 0 0 0.90 1.00 -13698 ILVBL ilvB (bacterial acetolactate synthase)-like 410012 2 2 2 3 1 1 0 0 0 0 0.90 1.00 -13699 CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 330624 1 1 1 1 0 1 0 0 0 0 0.90 1.00 -13700 GLYCTK glycerate kinase 344372 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -13701 KIF4A kinesin family member 4A 837232 4 4 4 4 2 1 1 0 0 0 0.90 1.00 -13702 OVCH2 ovochymase 2 363176 1 1 1 2 0 1 0 0 0 0 0.90 1.00 -13703 INTS9 integrator complex subunit 9 458080 2 2 2 1 1 0 1 0 0 0 0.90 1.00 -13704 IFT74 intraflagellar transport 74 homolog (Chlamydomonas) 436352 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13705 MAST4 microtubule associated serine/threonine kinase family member 4 1655768 13 9 13 2 5 5 2 0 1 0 0.91 1.00 -13706 EGLN1 egl nine homolog 1 (C. elegans) 190372 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13707 ANKRD20A4 ankyrin repeat domain 20 family, member A4 300356 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13708 DES desmin 236452 1 1 1 1 1 0 0 0 0 0 0.91 1.00 -13709 ASXL3 additional sex combs like 3 (Drosophila) 1496908 9 5 9 7 1 6 2 0 0 0 0.91 1.00 -13710 NAGS N-acetylglutamate synthase 236388 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13711 RABEP2 rabaptin, RAB GTPase binding effector protein 2 337344 2 2 2 1 1 1 0 0 0 0 0.91 1.00 -13712 FAM126B family with sequence similarity 126, member B 365792 1 1 1 2 0 1 0 0 0 0 0.91 1.00 -13713 TMEM120B transmembrane protein 120B 239064 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13714 ELMO3 engulfment and cell motility 3 505120 2 2 2 1 1 0 1 0 0 0 0.91 1.00 -13715 CCDC38 coiled-coil domain containing 38 392448 1 1 1 1 0 1 0 0 0 0 0.91 1.00 -13716 ATG16L2 ATG16 autophagy related 16-like 2 (S. cerevisiae) 334072 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13717 WDR20 WD repeat domain 20 402528 1 1 1 1 0 0 1 0 0 0 0.91 1.00 -13718 DGCR2 DiGeorge syndrome critical region gene 2 340044 2 2 2 1 2 0 0 0 0 0 0.91 1.00 -13719 OTOP1 otopetrin 1 357924 2 2 2 1 1 1 0 0 0 0 0.91 1.00 -13720 CORO1A coronin, actin binding protein, 1A 285432 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13721 DNMT3L DNA (cytosine-5-)-methyltransferase 3-like 227672 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13722 RNF38 ring finger protein 38 357504 1 1 1 1 0 1 0 0 0 0 0.91 1.00 -13723 NPHP3 nephronophthisis 3 (adolescent) 886704 4 3 4 1 1 0 3 0 0 0 0.91 1.00 -13724 HECTD1 HECT domain containing 1 1792224 9 8 9 1 1 5 3 0 0 0 0.91 1.00 -13725 RRBP1 ribosome binding protein 1 homolog 180kDa (dog) 659464 4 4 4 0 3 1 0 0 0 0 0.91 1.00 -13726 FRAS1 Fraser syndrome 1 2736728 16 10 16 9 3 7 4 0 2 0 0.91 1.00 -13727 UHRF1 ubiquitin-like, containing PHD and RING finger domains, 1 534244 2 2 2 0 0 1 1 0 0 0 0.91 1.00 -13728 GPR83 G protein-coupled receptor 83 285824 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13729 KCNJ6 potassium inwardly-rectifying channel, subfamily J, member 6 287616 1 1 1 2 1 0 0 0 0 0 0.91 1.00 -13730 USP1 ubiquitin specific peptidase 1 529984 1 1 1 1 0 0 1 0 0 0 0.91 1.00 -13731 CASC5 cancer susceptibility candidate 5 1574256 11 6 11 2 1 6 4 0 0 0 0.91 1.00 -13732 FAM91A1 family with sequence similarity 91, member A1 582036 3 2 3 0 1 1 0 0 1 0 0.91 1.00 -13733 SLC20A2 solute carrier family 20 (phosphate transporter), member 2 447776 2 2 2 3 1 1 0 0 0 0 0.91 1.00 -13734 JMY 490336 2 2 2 0 1 0 1 0 0 0 0.91 1.00 -13735 ROCK2 Rho-associated, coiled-coil containing protein kinase 2 949676 6 3 6 0 1 4 0 0 1 0 0.91 1.00 -13736 ANKRD26 ankyrin repeat domain 26 1173032 11 5 11 1 1 7 2 0 1 0 0.91 1.00 -13737 RBBP8 retinoblastoma binding protein 8 621152 2 2 2 0 1 0 1 0 0 0 0.91 1.00 -13738 HEPH hephaestin 773024 4 3 4 1 0 2 2 0 0 0 0.91 1.00 -13739 PELI2 pellino homolog 2 (Drosophila) 282516 1 1 1 2 1 0 0 0 0 0 0.91 1.00 -13740 TRIM29 tripartite motif-containing 29 389844 2 2 2 0 0 2 0 0 0 0 0.91 1.00 -13741 ADRBK1 adrenergic, beta, receptor kinase 1 411432 1 1 1 0 0 0 0 1 0 0 0.91 1.00 -13742 TMEM63C transmembrane protein 63C 524752 3 3 3 3 2 1 0 0 0 0 0.91 1.00 -13743 CDC6 cell division cycle 6 homolog (S. cerevisiae) 386848 1 1 1 1 0 1 0 0 0 0 0.91 1.00 -13744 SYT13 synaptotagmin XIII 279608 1 1 1 2 0 1 0 0 0 0 0.91 1.00 -13745 LLGL2 lethal giant larvae homolog 2 (Drosophila) 591708 2 2 2 0 1 1 0 0 0 0 0.91 1.00 -13746 FBXO46 F-box protein 46 344232 1 1 1 1 0 0 0 0 1 0 0.91 1.00 -13747 NOP56 403732 4 2 4 1 2 2 0 0 0 0 0.91 1.00 -13748 KPNB1 karyopherin (importin) beta 1 607208 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13749 FAM151A family with sequence similarity 151, member A 400960 1 1 1 1 0 1 0 0 0 0 0.91 1.00 -13750 CCDC74B coiled-coil domain containing 74B 247912 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13751 FOXO1 forkhead box O1 322028 1 1 1 2 1 0 0 0 0 0 0.91 1.00 -13752 HPS5 Hermansky-Pudlak syndrome 5 779072 3 3 3 0 0 2 0 0 1 0 0.91 1.00 -13753 ABI2 abl interactor 2 328832 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13754 SETD4 SET domain containing 4 300748 1 1 1 2 1 0 0 0 0 0 0.91 1.00 -13755 PRRT3 proline-rich transmembrane protein 3 372780 2 2 2 1 0 2 0 0 0 0 0.91 1.00 -13756 SH3RF1 SH3 domain containing ring finger 1 599368 3 3 3 1 1 1 1 0 0 0 0.91 1.00 -13757 COG8 component of oligomeric golgi complex 8 355740 1 1 1 1 0 0 0 0 1 0 0.91 1.00 -13758 EPS8L1 EPS8-like 1 383516 1 1 1 0 0 0 0 1 0 0 0.91 1.00 -13759 C5orf54 392984 2 1 2 2 0 2 0 0 0 0 0.91 1.00 -13760 NOD2 nucleotide-binding oligomerization domain containing 2 698068 5 4 5 2 2 2 1 0 0 0 0.91 1.00 -13761 MAP4 microtubule-associated protein 4 1051336 4 4 4 1 1 2 1 0 0 0 0.91 1.00 -13762 BCL6B B-cell CLL/lymphoma 6, member B (zinc finger protein) 311080 1 1 1 1 0 0 1 0 0 0 0.91 1.00 -13763 STAT5B signal transducer and activator of transcription 5B 510720 3 3 3 2 1 2 0 0 0 0 0.91 1.00 -13764 SCN8A sodium channel, voltage gated, type VIII, alpha subunit 1351340 6 6 6 4 2 3 1 0 0 0 0.91 1.00 -13765 PADI4 peptidyl arginine deiminase, type IV 460544 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13766 ZFY zinc finger protein, Y-linked 340760 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13767 ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 854640 4 4 4 0 2 1 0 0 1 0 0.91 1.00 -13768 TEP1 telomerase-associated protein 1 1814400 7 7 7 3 2 4 0 0 1 0 0.91 1.00 -13769 TNPO3 transportin 3 640640 2 2 2 0 0 2 0 0 0 0 0.91 1.00 -13770 CPAMD8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 1159520 9 6 9 3 4 3 2 0 0 0 0.91 1.00 -13771 EPHA10 EPH receptor A10 543744 3 3 3 1 3 0 0 0 0 0 0.91 1.00 -13772 FGFR2 fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome) 603904 6 3 6 2 4 2 0 0 0 0 0.91 1.00 -13773 HHIPL1 HHIP-like 1 291648 1 1 1 1 1 0 0 0 0 0 0.91 1.00 -13774 SNX18 sorting nexin 18 339248 1 1 1 3 0 0 1 0 0 0 0.91 1.00 -13775 RNF213 ring finger protein 213 2941592 19 13 19 3 9 7 1 0 0 2 0.91 1.00 -13776 CPN2 carboxypeptidase N, polypeptide 2 367808 1 1 1 3 0 1 0 0 0 0 0.91 1.00 -13777 STARD3 StAR-related lipid transfer (START) domain containing 3 314328 1 1 1 1 1 0 0 0 0 0 0.91 1.00 -13778 SNRK SNF related kinase 519232 2 2 2 2 0 1 1 0 0 0 0.91 1.00 -13779 BACE1 beta-site APP-cleaving enzyme 1 311168 1 1 1 1 1 0 0 0 0 0 0.91 1.00 -13780 LEPREL2 leprecan-like 2 372592 1 1 1 1 0 1 0 0 0 0 0.91 1.00 -13781 TTC7B tetratricopeptide repeat domain 7B 568960 3 3 3 3 0 3 0 0 0 0 0.91 1.00 -13782 R3HDM1 R3H domain containing 1 760704 3 2 3 0 1 2 0 0 0 0 0.91 1.00 -13783 C22orf9 chromosome 22 open reading frame 9 266852 1 1 1 1 1 0 0 0 0 0 0.91 1.00 -13784 AGBL5 ATP/GTP binding protein-like 5 623168 3 3 3 2 1 2 0 0 0 0 0.91 1.00 -13785 HSPA2 heat shock 70kDa protein 2 415436 2 2 2 1 1 0 0 0 1 0 0.91 1.00 -13786 FBLN5 fibulin 5 303560 1 1 1 1 0 0 1 0 0 0 0.91 1.00 -13787 PML promyelocytic leukemia 740664 4 4 4 3 2 2 0 0 0 0 0.91 1.00 -13788 RNF123 ring finger protein 123 898864 6 6 6 1 3 3 0 0 0 0 0.91 1.00 -13789 MATK megakaryocyte-associated tyrosine kinase 342724 3 2 3 0 3 0 0 0 0 0 0.91 1.00 -13790 MAP3K14 mitogen-activated protein kinase kinase kinase 14 637488 3 3 3 1 2 0 1 0 0 0 0.91 1.00 -13791 RORC RAR-related orphan receptor C 361088 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13792 LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 488848 2 2 2 1 2 0 0 0 0 0 0.91 1.00 -13793 SSH3 slingshot homolog 3 (Drosophila) 414008 1 1 1 2 0 0 0 1 0 0 0.91 1.00 -13794 HCN3 hyperpolarization activated cyclic nucleotide-gated potassium channel 3 501424 3 3 3 2 2 1 0 0 0 0 0.91 1.00 -13795 TMEM181 transmembrane protein 181 355704 1 1 1 3 1 0 0 0 0 0 0.91 1.00 -13796 PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa 225232 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13797 NEU2 sialidase 2 (cytosolic sialidase) 255752 1 1 1 1 1 0 0 0 0 0 0.91 1.00 -13798 AP4B1 adaptor-related protein complex 4, beta 1 subunit 506240 2 2 2 0 1 0 1 0 0 0 0.91 1.00 -13799 PRICKLE4 prickle homolog 4 (Drosophila) 260064 1 1 1 1 0 1 0 0 0 0 0.91 1.00 -13800 GNL1 guanine nucleotide binding protein-like 1 338252 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -13801 ACSM3 acyl-CoA synthetase medium-chain family member 3 408352 1 1 1 0 0 0 1 0 0 0 0.91 1.00 -13802 CCDC18 coiled-coil domain containing 18 965384 5 4 4 1 0 3 1 0 1 0 0.91 1.00 -13803 YY1 YY1 transcription factor 196868 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13804 PHACTR1 phosphatase and actin regulator 1 389484 1 1 1 3 0 1 0 0 0 0 0.91 1.00 -13805 EHHADH enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase 492800 2 2 2 0 2 0 0 0 0 0 0.91 1.00 -13806 PROC protein C (inactivator of coagulation factors Va and VIIIa) 267512 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -13807 PLB1 phospholipase B1 1034656 3 3 3 4 0 1 1 1 0 0 0.91 1.00 -13808 AAK1 AP2 associated kinase 1 588056 2 2 2 2 1 1 0 0 0 0 0.91 1.00 -13809 SEL1L sel-1 suppressor of lin-12-like (C. elegans) 553056 3 2 3 3 1 2 0 0 0 0 0.92 1.00 -13810 ANKMY1 ankyrin repeat and MYND domain containing 1 685720 2 2 2 2 1 0 0 0 1 0 0.92 1.00 -13811 NPEPL1 aminopeptidase-like 1 277340 1 1 1 1 1 0 0 0 0 0 0.92 1.00 -13812 PRX periaxin 880900 4 4 4 3 2 1 1 0 0 0 0.92 1.00 -13813 PRSS36 protease, serine, 36 463624 2 2 2 2 0 2 0 0 0 0 0.92 1.00 -13814 DCST1 DC-STAMP domain containing 1 479528 2 2 2 1 1 1 0 0 0 0 0.92 1.00 -13815 TRANK1 1605680 14 6 14 4 3 4 4 0 1 2 0.92 1.00 -13816 EPC1 enhancer of polycomb homolog 1 (Drosophila) 575904 2 2 2 1 0 1 1 0 0 0 0.92 1.00 -13817 HOXB3 homeobox B3 281260 2 2 2 0 1 1 0 0 0 0 0.92 1.00 -13818 ITGA1 integrin, alpha 1 804384 3 3 3 3 1 1 1 0 0 0 0.92 1.00 -13819 C2orf78 600320 2 2 2 0 1 0 1 0 0 0 0.92 1.00 -13820 SYNGAP1 synaptic Ras GTPase activating protein 1 homolog (rat) 877728 6 5 6 2 2 4 0 0 0 0 0.92 1.00 -13821 MFI2 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 502668 2 2 2 0 1 1 0 0 0 0 0.92 1.00 -13822 SP6 Sp6 transcription factor 189476 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13823 ITGA6 integrin, alpha 6 779464 4 4 3 4 2 0 1 1 0 0 0.92 1.00 -13824 SH3GL1 SH3-domain GRB2-like 1 248948 1 1 1 2 1 0 0 0 0 0 0.92 1.00 -13825 CDH15 cadherin 15, M-cadherin (myotubule) 393120 1 1 1 0 0 0 0 0 1 0 0.92 1.00 -13826 MORN1 MORN repeat containing 1 261196 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13827 LRRC47 leucine rich repeat containing 47 273028 1 1 1 1 1 0 0 0 0 0 0.92 1.00 -13828 BAIAP2L2 BAI1-associated protein 2-like 2 247184 1 1 1 1 1 0 0 0 0 0 0.92 1.00 -13829 CCT3 chaperonin containing TCP1, subunit 3 (gamma) 374696 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13830 MUC2 mucin 2, oligomeric mucus/gel-forming 1419928 6 5 6 0 1 2 1 0 2 0 0.92 1.00 -13831 AKAP13 A kinase (PRKA) anchor protein 13 1935080 8 6 8 5 0 5 0 0 3 0 0.92 1.00 -13832 ATAD3A ATPase family, AAA domain containing 3A 324172 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13833 DEAF1 deformed epidermal autoregulatory factor 1 (Drosophila) 320572 1 1 1 3 0 0 0 0 1 0 0.92 1.00 -13834 CAPN1 calpain 1, (mu/I) large subunit 458232 2 2 2 0 2 0 0 0 0 0 0.92 1.00 -13835 HIP1R huntingtin interacting protein 1 related 606440 2 2 2 0 1 0 0 0 1 0 0.92 1.00 -13836 MLL2 myeloid/lymphoid or mixed-lineage leukemia 2 3580264 17 13 17 6 6 3 4 0 4 0 0.92 1.00 -13837 ACOT2 acyl-CoA thioesterase 2 268632 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13838 C10orf2 chromosome 10 open reading frame 2 449400 2 2 2 1 1 1 0 0 0 0 0.92 1.00 -13839 GPR108 G protein-coupled receptor 108 356076 3 2 3 1 2 1 0 0 0 0 0.92 1.00 -13840 TPCN1 two pore segment channel 1 572432 2 2 2 5 0 1 1 0 0 0 0.92 1.00 -13841 TSNARE1 t-SNARE domain containing 1 319680 1 1 1 0 0 0 1 0 0 0 0.92 1.00 -13842 ARID3A AT rich interactive domain 3A (BRIGHT-like) 252828 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13843 ZNRF4 zinc and ring finger 4 269276 2 2 2 1 2 0 0 0 0 0 0.92 1.00 -13844 CATSPERG 556136 3 2 3 1 1 0 1 0 1 0 0.92 1.00 -13845 DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 350112 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13846 LENG9 leukocyte receptor cluster (LRC) member 9 200088 1 1 1 0 0 1 0 0 0 0 0.92 1.00 -13847 STAC2 SH3 and cysteine rich domain 2 279800 1 1 1 0 0 1 0 0 0 0 0.92 1.00 -13848 DLGAP3 discs, large (Drosophila) homolog-associated protein 3 547088 4 4 4 2 2 2 0 0 0 0 0.92 1.00 -13849 PAG1 phosphoprotein associated with glycosphingolipid microdomains 1 296352 2 1 2 1 2 0 0 0 0 0 0.92 1.00 -13850 TGM6 transglutaminase 6 486752 1 1 1 1 0 0 1 0 0 0 0.92 1.00 -13851 ZSWIM5 zinc finger, SWIM-type containing 5 719180 2 2 2 0 1 0 0 0 1 0 0.92 1.00 -13852 ADAM10 ADAM metallopeptidase domain 10 509640 1 1 1 2 0 0 1 0 0 0 0.92 1.00 -13853 KRT20 keratin 20 292768 1 1 1 2 1 0 0 0 0 0 0.92 1.00 -13854 ASPHD1 aspartate beta-hydroxylase domain containing 1 244960 2 1 2 0 2 0 0 0 0 0 0.92 1.00 -13855 SORBS2 sorbin and SH3 domain containing 2 786772 5 4 5 3 4 1 0 0 0 0 0.92 1.00 -13856 BMP2 bone morphogenetic protein 2 249052 1 1 1 2 0 1 0 0 0 0 0.92 1.00 -13857 KIAA1211 726656 5 4 5 5 3 1 0 0 1 0 0.92 1.00 -13858 POM121C POM121 membrane glycoprotein C 491112 1 1 1 0 0 0 1 0 0 0 0.92 1.00 -13859 KRT83 keratin 83 327108 1 1 1 3 0 0 1 0 0 0 0.92 1.00 -13860 UBR4 ubiquitin protein ligase E3 component n-recognin 4 3549644 18 12 18 6 5 6 3 0 2 2 0.92 1.00 -13861 ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 1218048 8 6 8 2 3 2 2 0 1 0 0.92 1.00 -13862 RAB11FIP5 RAB11 family interacting protein 5 (class I) 363244 1 1 1 2 1 0 0 0 0 0 0.92 1.00 -13863 C7orf26 chromosome 7 open reading frame 26 267652 1 1 1 1 1 0 0 0 0 0 0.92 1.00 -13864 CLCNKB chloride channel Kb 463876 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13865 ADAM8 ADAM metallopeptidase domain 8 236388 1 1 1 0 0 1 0 0 0 0 0.92 1.00 -13866 ATG2A ATG2 autophagy related 2 homolog A (S. cerevisiae) 1155864 5 5 5 2 0 1 3 1 0 0 0.92 1.00 -13867 EIF2C2 eukaryotic translation initiation factor 2C, 2 585656 4 3 4 0 2 1 1 0 0 0 0.92 1.00 -13868 MFSD10 major facilitator superfamily domain containing 10 231124 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13869 COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 1145432 4 4 4 0 1 1 1 0 1 0 0.92 1.00 -13870 ABCG5 ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1) 412288 1 1 1 3 1 0 0 0 0 0 0.92 1.00 -13871 TCTN1 tectonic family member 1 388444 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13872 PLCG1 phospholipase C, gamma 1 863572 4 4 4 3 3 0 1 0 0 0 0.92 1.00 -13873 ANUBL1 AN1, ubiquitin-like, homolog (Xenopus laevis) 497280 3 2 3 0 2 1 0 0 0 0 0.92 1.00 -13874 ZFP37 zinc finger protein 37 homolog (mouse) 425936 2 1 2 4 0 2 0 0 0 0 0.92 1.00 -13875 DEF8 differentially expressed in FDCP 8 homolog (mouse) 331980 1 1 1 0 0 1 0 0 0 0 0.92 1.00 -13876 LATS2 LATS, large tumor suppressor, homolog 2 (Drosophila) 599984 4 3 4 3 2 2 0 0 0 0 0.92 1.00 -13877 HOXC10 homeobox C10 219856 1 1 1 2 0 1 0 0 0 0 0.92 1.00 -13878 PTPRJ protein tyrosine phosphatase, receptor type, J 901152 4 4 4 1 1 1 2 0 0 0 0.92 1.00 -13879 HJURP Holliday junction recognition protein 497572 3 2 3 0 1 2 0 0 0 0 0.92 1.00 -13880 C2orf89 286192 1 1 1 1 0 1 0 0 0 0 0.92 1.00 -13881 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog 255332 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13882 TNRC6A trinucleotide repeat containing 6A 1339248 11 6 11 2 0 8 3 0 0 0 0.92 1.00 -13883 SLC46A2 solute carrier family 46, member 2 323120 1 1 1 2 0 0 1 0 0 0 0.92 1.00 -13884 PRKCSH protein kinase C substrate 80K-H 358316 1 1 1 1 0 1 0 0 0 0 0.92 1.00 -13885 QSOX2 quiescin Q6 sulfhydryl oxidase 2 426104 1 1 1 1 1 0 0 0 0 0 0.92 1.00 -13886 IRGQ immunity-related GTPase family, Q 324100 2 1 2 2 1 0 0 0 1 0 0.92 1.00 -13887 FRMD7 FERM domain containing 7 491232 1 1 1 1 0 1 0 0 0 0 0.92 1.00 -13888 PRPF3 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) 473088 1 1 1 1 0 1 0 0 0 0 0.92 1.00 -13889 AOAH acyloxyacyl hydrolase (neutrophil) 408128 1 1 1 2 0 1 0 0 0 0 0.92 1.00 -13890 ALDH9A1 aldehyde dehydrogenase 9 family, member A1 343084 1 1 1 1 0 1 0 0 0 0 0.92 1.00 -13891 TAPBPL TAP binding protein-like 306072 1 1 1 0 1 0 0 0 0 0 0.92 1.00 -13892 HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 446824 2 2 2 1 0 1 1 0 0 0 0.92 1.00 -13893 AGAP2 594668 5 4 5 2 3 2 0 0 0 0 0.92 1.00 -13894 ANAPC4 anaphase promoting complex subunit 4 568736 4 2 4 3 1 1 2 0 0 0 0.92 1.00 -13895 SEMA6B sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B 363608 2 2 2 1 2 0 0 0 0 0 0.92 1.00 -13896 RNF220 393568 1 1 1 2 1 0 0 0 0 0 0.92 1.00 -13897 UNC5CL unc-5 homolog C (C. elegans)-like 349216 1 1 1 2 1 0 0 0 0 0 0.92 1.00 -13898 CD248 CD248 molecule, endosialin 392872 1 1 1 0 0 0 1 0 0 0 0.92 1.00 -13899 TNFRSF8 tumor necrosis factor receptor superfamily, member 8 391624 2 2 2 2 1 1 0 0 0 0 0.92 1.00 -13900 ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 706624 4 4 4 3 2 2 0 0 0 0 0.92 1.00 -13901 OBSCN obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF 4468224 26 17 26 6 9 9 3 1 4 0 0.92 1.00 -13902 WWC2 WW and C2 domain containing 2 762144 2 2 2 3 1 0 0 0 1 0 0.92 1.00 -13903 LRRC4B leucine rich repeat containing 4B 398776 2 2 2 4 2 0 0 0 0 0 0.92 1.00 -13904 OGG1 8-oxoguanine DNA glycosylase 382824 1 1 1 1 0 1 0 0 0 0 0.92 1.00 -13905 DENND4B DENN/MADD domain containing 4B 990676 6 5 6 0 4 1 0 0 1 0 0.92 1.00 -13906 MAN2B1 mannosidase, alpha, class 2B, member 1 625044 5 4 5 4 1 3 1 0 0 0 0.92 1.00 -13907 TENC1 tensin like C1 domain containing phosphatase (tensin 2) 893844 1 1 1 2 0 0 0 0 1 0 0.93 1.00 -13908 TSC1 tuberous sclerosis 1 799848 4 4 4 5 2 1 1 0 0 0 0.93 1.00 -13909 SACM1L SAC1 suppressor of actin mutations 1-like (yeast) 408160 1 1 1 2 0 1 0 0 0 0 0.93 1.00 -13910 VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae) 604408 2 2 2 2 0 2 0 0 0 0 0.93 1.00 -13911 INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa 682488 3 3 3 2 2 1 0 0 0 0 0.93 1.00 -13912 KCNH4 potassium voltage-gated channel, subfamily H (eag-related), member 4 666076 3 3 3 2 3 0 0 0 0 0 0.93 1.00 -13913 TSC22D2 TSC22 domain family, member 2 403116 3 3 3 0 0 3 0 0 0 0 0.93 1.00 -13914 NOD1 nucleotide-binding oligomerization domain containing 1 650524 4 3 4 1 2 1 1 0 0 0 0.93 1.00 -13915 AUP1 ancient ubiquitous protein 1 276608 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13916 CDC45 392532 1 1 1 1 0 1 0 0 0 0 0.93 1.00 -13917 GP6 glycoprotein VI (platelet) 395212 2 2 2 1 1 1 0 0 0 0 0.93 1.00 -13918 LPHN1 latrophilin 1 920592 4 4 4 1 2 0 1 0 1 0 0.93 1.00 -13919 NOX5 NADPH oxidase, EF-hand calcium binding domain 5 498428 1 1 1 3 0 0 0 0 1 0 0.93 1.00 -13920 S1PR5 177744 1 1 1 0 0 1 0 0 0 0 0.93 1.00 -13921 KIAA0355 KIAA0355 723904 2 2 2 3 0 1 1 0 0 0 0.93 1.00 -13922 APOB48R 600672 2 2 2 0 2 0 0 0 0 0 0.93 1.00 -13923 TUBG1 tubulin, gamma 1 306392 1 1 1 1 1 0 0 0 0 0 0.93 1.00 -13924 NEURL neuralized homolog (Drosophila) 231812 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13925 FGFR3 fibroblast growth factor receptor 3 (achondroplasia, thanatophoric dwarfism) 399464 2 2 2 0 2 0 0 0 0 0 0.93 1.00 -13926 GPATCH8 G patch domain containing 8 1017184 3 3 3 0 1 0 1 0 1 0 0.93 1.00 -13927 TRIM71 tripartite motif-containing 71 457744 3 3 3 0 2 0 1 0 0 0 0.93 1.00 -13928 GALC galactosylceramidase 456120 1 1 1 0 0 0 1 0 0 0 0.93 1.00 -13929 CPSF2 cleavage and polyadenylation specific factor 2, 100kDa 538720 1 1 1 1 1 0 0 0 0 0 0.93 1.00 -13930 PKN3 protein kinase N3 553784 2 2 2 2 2 0 0 0 0 0 0.93 1.00 -13931 NSUN5 NOL1/NOP2/Sun domain family, member 5 324936 1 1 1 1 0 1 0 0 0 0 0.93 1.00 -13932 OSBPL1A oxysterol binding protein-like 1A 663264 3 2 3 0 1 1 1 0 0 0 0.93 1.00 -13933 ZNF460 zinc finger protein 460 381024 1 1 1 1 1 0 0 0 0 0 0.93 1.00 -13934 MLXIP MLX interacting protein 528544 1 1 1 3 0 0 0 0 1 0 0.93 1.00 -13935 MICAL1 microtubule associated monoxygenase, calponin and LIM domain containing 1 723744 2 2 2 4 1 0 0 0 1 0 0.93 1.00 -13936 SART1 squamous cell carcinoma antigen recognized by T cells 409192 1 1 1 0 0 0 0 0 1 0 0.93 1.00 -13937 RC3H2 ring finger and CCCH-type zinc finger domains 2 821184 3 2 3 0 1 0 1 0 1 0 0.93 1.00 -13938 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 739424 2 2 2 2 1 1 0 0 0 0 0.93 1.00 -13939 CDK16 348000 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13940 SRL sarcalumenin 323904 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13941 MIB1 mindbomb homolog 1 (Drosophila) 675948 3 2 3 1 1 2 0 0 0 0 0.93 1.00 -13942 E2F2 E2F transcription factor 2 281232 1 1 1 1 1 0 0 0 0 0 0.93 1.00 -13943 ROBO3 roundabout, axon guidance receptor, homolog 3 (Drosophila) 774988 5 4 5 2 1 4 0 0 0 0 0.93 1.00 -13944 CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 293300 1 1 1 1 1 0 0 0 0 0 0.93 1.00 -13945 RNF207 ring finger protein 207 286000 1 1 1 3 1 0 0 0 0 0 0.93 1.00 -13946 PDHX pyruvate dehydrogenase complex, component X 342440 2 1 2 1 2 0 0 0 0 0 0.93 1.00 -13947 CPNE5 copine V 391464 1 1 1 3 0 1 0 0 0 0 0.93 1.00 -13948 PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 361992 1 1 1 3 1 0 0 0 0 0 0.93 1.00 -13949 SNTA1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) 276864 1 1 1 3 0 1 0 0 0 0 0.93 1.00 -13950 HR hairless homolog (mouse) 586700 2 2 2 0 1 1 0 0 0 0 0.93 1.00 -13951 SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 330792 1 1 1 1 0 0 1 0 0 0 0.93 1.00 -13952 FANCI Fanconi anemia, complementation group I 885024 3 2 3 0 0 3 0 0 0 0 0.93 1.00 -13953 TBRG4 transforming growth factor beta regulator 4 424088 1 1 1 1 0 1 0 0 0 0 0.93 1.00 -13954 MKL2 MKL/myocardin-like 2 719040 3 2 3 3 0 0 2 0 1 0 0.93 1.00 -13955 SLC10A3 solute carrier family 10 (sodium/bile acid cotransporter family), member 3 300608 1 1 1 1 0 1 0 0 0 0 0.93 1.00 -13956 CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 480480 3 2 2 1 1 2 0 0 0 0 0.93 1.00 -13957 LUC7L3 299936 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13958 FZD8 frizzled homolog 8 (Drosophila) 262184 1 1 1 1 0 0 1 0 0 0 0.93 1.00 -13959 ZNF236 zinc finger protein 236 1251992 12 8 11 2 8 1 3 0 0 0 0.93 1.00 -13960 TERF2 telomeric repeat binding factor 2 316624 1 1 1 2 0 1 0 0 0 0 0.93 1.00 -13961 ZNF319 zinc finger protein 319 359268 2 2 2 0 2 0 0 0 0 0 0.93 1.00 -13962 MYO7A myosin VIIA 1189392 7 6 7 3 4 1 1 0 1 0 0.93 1.00 -13963 GHDC GH3 domain containing 285932 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13964 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 544628 2 2 2 0 0 1 0 0 1 0 0.93 1.00 -13965 MINPP1 multiple inositol polyphosphate histidine phosphatase, 1 309904 1 1 1 0 0 0 1 0 0 0 0.93 1.00 -13966 CDHR3 612416 2 2 2 2 1 1 0 0 0 0 0.93 1.00 -13967 GAB2 GRB2-associated binding protein 2 457268 1 1 1 0 0 0 1 0 0 0 0.93 1.00 -13968 LRIG2 leucine-rich repeats and immunoglobulin-like domains 2 729036 2 2 2 1 0 0 2 0 0 0 0.93 1.00 -13969 GPR4 G protein-coupled receptor 4 218288 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13970 UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 362656 1 1 1 0 0 1 0 0 0 0 0.93 1.00 -13971 RCOR2 REST corepressor 2 277132 2 1 2 1 2 0 0 0 0 0 0.93 1.00 -13972 PGD phosphogluconate dehydrogenase 336896 1 1 1 0 0 1 0 0 0 0 0.93 1.00 -13973 FDXR ferredoxin reductase 306068 1 1 1 1 0 1 0 0 0 0 0.93 1.00 -13974 C2orf29 chromosome 2 open reading frame 29 283472 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13975 ZNF813 zinc finger protein 813 417984 4 1 4 0 0 2 2 0 0 0 0.93 1.00 -13976 C17orf80 chromosome 17 open reading frame 80 419552 1 1 1 4 0 1 0 0 0 0 0.93 1.00 -13977 SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 312928 1 1 1 2 1 0 0 0 0 0 0.93 1.00 -13978 KLHL31 kelch-like 31 (Drosophila) 399448 1 1 1 1 0 0 1 0 0 0 0.93 1.00 -13979 RANGAP1 Ran GTPase activating protein 1 390820 1 1 1 1 1 0 0 0 0 0 0.93 1.00 -13980 PI4KB phosphatidylinositol 4-kinase, catalytic, beta 567840 2 2 2 0 1 0 1 0 0 0 0.93 1.00 -13981 TNPO2 transportin 2 (importin 3, karyopherin beta 2b) 593736 2 2 2 0 2 0 0 0 0 0 0.93 1.00 -13982 NSD1 nuclear receptor binding SET domain protein 1 1832096 14 8 14 4 4 5 5 0 0 0 0.93 1.00 -13983 PMPCA peptidase (mitochondrial processing) alpha 349328 1 1 1 0 0 0 1 0 0 0 0.93 1.00 -13984 MEP1A meprin A, alpha (PABA peptide hydrolase) 514528 2 2 2 1 2 0 0 0 0 0 0.93 1.00 -13985 SLC15A1 solute carrier family 15 (oligopeptide transporter), member 1 495264 3 2 3 3 1 2 0 0 0 0 0.93 1.00 -13986 KANK4 KN motif and ankyrin repeat domains 4 677376 2 2 2 2 0 1 1 0 0 0 0.93 1.00 -13987 ORC1L origin recognition complex, subunit 1-like (yeast) 593600 1 1 1 1 0 1 0 0 0 0 0.93 1.00 -13988 ZNF79 zinc finger protein 79 339808 1 1 1 0 0 1 0 0 0 0 0.93 1.00 -13989 FNTB farnesyltransferase, CAAX box, beta 305088 1 1 1 2 1 0 0 0 0 0 0.93 1.00 -13990 VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) 578232 4 3 4 2 3 0 1 0 0 0 0.93 1.00 -13991 WDR34 WD repeat domain 34 322804 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -13992 KIAA0513 KIAA0513 282996 1 1 1 0 0 1 0 0 0 0 0.93 1.00 -13993 USP24 ubiquitin specific peptidase 24 1664824 6 5 6 2 1 2 1 0 0 2 0.93 1.00 -13994 FAM21C family with sequence similarity 21, member C 562780 5 2 5 1 1 4 0 0 0 0 0.93 1.00 -13995 MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 328580 1 1 1 1 0 0 1 0 0 0 0.93 1.00 -13996 FGFR4 fibroblast growth factor receptor 4 570528 2 2 2 1 0 1 0 1 0 0 0.93 1.00 -13997 ST14 suppression of tumorigenicity 14 (colon carcinoma) 541640 3 3 3 1 1 2 0 0 0 0 0.93 1.00 -13998 SLC22A12 solute carrier family 22 (organic anion/urate transporter), member 12 358096 1 1 1 1 1 0 0 0 0 0 0.93 1.00 -13999 MYOM3 myomesin family, member 3 992276 2 2 2 1 1 0 0 0 1 0 0.93 1.00 -14000 ABCB9 ATP-binding cassette, sub-family B (MDR/TAP), member 9 446748 2 2 2 0 1 1 0 0 0 0 0.93 1.00 -14001 PCNXL2 pecanex-like 2 (Drosophila) 1393244 12 8 11 7 6 4 2 0 0 0 0.93 1.00 -14002 TLK2 tousled-like kinase 2 523488 3 2 3 2 1 1 1 0 0 0 0.93 1.00 -14003 NPC1L1 NPC1 (Niemann-Pick disease, type C1, gene)-like 1 901480 4 4 4 3 2 2 0 0 0 0 0.93 1.00 -14004 ZNF496 zinc finger protein 496 387968 2 2 2 3 1 1 0 0 0 0 0.93 1.00 -14005 MYBBP1A MYB binding protein (P160) 1a 842716 4 3 4 2 1 2 0 0 1 0 0.93 1.00 -14006 SKIL SKI-like oncogene 465696 1 1 1 0 0 1 0 0 0 0 0.93 1.00 -14007 ZNF618 zinc finger protein 618 583112 4 4 4 3 2 0 2 0 0 0 0.93 1.00 -14008 PLEKHG4 pleckstrin homology domain containing, family G (with RhoGef domain) member 4 790612 6 4 6 1 4 2 0 0 0 0 0.93 1.00 -14009 SH3D19 SH3 domain containing 19 544992 2 1 2 1 1 1 0 0 0 0 0.93 1.00 -14010 ATMIN ATM interactor 498932 4 2 4 0 1 3 0 0 0 0 0.93 1.00 -14011 ZNF778 zinc finger protein 778 495040 2 2 2 1 0 2 0 0 0 0 0.93 1.00 -14012 MYH13 myosin, heavy chain 13, skeletal muscle 1319048 17 8 16 5 8 7 2 0 0 0 0.94 1.00 -14013 C9orf5 chromosome 9 open reading frame 5 493688 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14014 TOM1L2 target of myb1-like 2 (chicken) 346760 1 1 1 0 0 0 1 0 0 0 0.94 1.00 -14015 SLC2A6 solute carrier family 2 (facilitated glucose transporter), member 6 248284 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14016 ASB6 ankyrin repeat and SOCS box-containing 6 288876 2 1 2 1 2 0 0 0 0 0 0.94 1.00 -14017 PCNT pericentrin 2078056 9 8 9 6 6 2 0 0 1 0 0.94 1.00 -14018 RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1 754760 6 4 6 2 0 5 1 0 0 0 0.94 1.00 -14019 NSMAF neutral sphingomyelinase (N-SMase) activation associated factor 630560 3 2 3 4 1 2 0 0 0 0 0.94 1.00 -14020 CCDC102A coiled-coil domain containing 102A 262520 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14021 KIF18B kinesin family member 18B 533728 2 2 2 0 1 1 0 0 0 0 0.94 1.00 -14022 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 504872 2 2 2 1 1 1 0 0 0 0 0.94 1.00 -14023 XPC xeroderma pigmentosum, complementation group C 633820 3 3 3 1 1 1 1 0 0 0 0.94 1.00 -14024 MAST1 microtubule associated serine/threonine kinase 1 977200 6 5 6 3 1 4 1 0 0 0 0.94 1.00 -14025 RUNDC1 RUN domain containing 1 323096 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14026 SMC6 structural maintenance of chromosomes 6 757120 1 1 1 2 0 0 0 0 1 0 0.94 1.00 -14027 TMEM131 transmembrane protein 131 1235928 4 4 4 3 3 0 1 0 0 0 0.94 1.00 -14028 BRD3 bromodomain containing 3 481272 2 2 2 1 2 0 0 0 0 0 0.94 1.00 -14029 LRRC37B leucine rich repeat containing 37B 636464 2 2 2 1 1 1 0 0 0 0 0.94 1.00 -14030 TMEM8A 395632 1 1 1 1 0 1 0 0 0 0 0.94 1.00 -14031 FGGY FGGY carbohydrate kinase domain containing 401408 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14032 NLRX1 NLR family member X1 672532 2 2 2 0 0 1 0 0 1 0 0.94 1.00 -14033 STEAP3 STEAP family member 3 321748 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14034 IWS1 IWS1 homolog (S. cerevisiae) 563584 1 1 1 1 0 0 0 0 1 0 0.94 1.00 -14035 MAP4K1 mitogen-activated protein kinase kinase kinase kinase 1 557688 3 3 3 0 2 1 0 0 0 0 0.94 1.00 -14036 DGKA diacylglycerol kinase, alpha 80kDa 515200 1 1 1 0 0 1 0 0 0 0 0.94 1.00 -14037 ZHX1 zinc fingers and homeoboxes 1 588224 5 2 5 1 1 4 0 0 0 0 0.94 1.00 -14038 TNS4 tensin 4 480144 1 1 1 1 0 1 0 0 0 0 0.94 1.00 -14039 TBCD tubulin folding cofactor D 761836 3 3 3 1 2 0 0 0 1 0 0.94 1.00 -14040 CCDC62 coiled-coil domain containing 62 473760 1 1 1 2 1 0 0 0 0 0 0.94 1.00 -14041 PXK PX domain containing serine/threonine kinase 381472 1 1 1 2 0 1 0 0 0 0 0.94 1.00 -14042 PDP2 351764 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14043 TBC1D1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 789908 4 4 4 1 1 2 1 0 0 0 0.94 1.00 -14044 XPO6 exportin 6 778176 4 4 4 1 3 0 1 0 0 0 0.94 1.00 -14045 SPATS2L 374908 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14046 KRT8 keratin 8 298732 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14047 ZNF532 zinc finger protein 532 882028 3 3 3 6 0 2 1 0 0 0 0.94 1.00 -14048 ZNF324 zinc finger protein 324 323568 2 2 2 1 2 0 0 0 0 0 0.94 1.00 -14049 FOXRED1 FAD-dependent oxidoreductase domain containing 1 310240 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14050 SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa 741776 3 3 3 2 1 0 1 0 1 0 0.94 1.00 -14051 RNF31 ring finger protein 31 721252 2 2 2 3 1 0 0 0 1 0 0.94 1.00 -14052 ANKRD13C ankyrin repeat domain 13C 372200 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14053 LHX2 LIM homeobox 2 232604 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14054 RASGRP4 RAS guanyl releasing protein 4 440304 2 2 2 2 1 0 1 0 0 0 0.94 1.00 -14055 FRMD5 FERM domain containing 5 382592 1 1 1 0 0 0 1 0 0 0 0.94 1.00 -14056 MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 391072 1 1 1 5 1 0 0 0 0 0 0.94 1.00 -14057 SLC5A1 solute carrier family 5 (sodium/glucose cotransporter), member 1 460320 1 1 1 2 0 0 1 0 0 0 0.94 1.00 -14058 GRAMD1A GRAM domain containing 1A 486728 1 1 1 0 0 0 0 0 1 0 0.94 1.00 -14059 DLGAP1 discs, large (Drosophila) homolog-associated protein 1 625884 3 3 3 2 2 1 0 0 0 0 0.94 1.00 -14060 PCSK6 proprotein convertase subtilisin/kexin type 6 633176 3 3 3 2 2 0 1 0 0 0 0.94 1.00 -14061 LMF1 lipase maturation factor 1 304920 2 1 2 0 2 0 0 0 0 0 0.94 1.00 -14062 TERT telomerase reverse transcriptase 498024 2 2 2 1 1 0 0 0 1 0 0.94 1.00 -14063 CCDC61 coiled-coil domain containing 61 280340 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14064 ARHGAP10 Rho GTPase activating protein 10 549472 2 2 2 2 1 0 1 0 0 0 0.94 1.00 -14065 DPYSL5 dihydropyrimidinase-like 5 390432 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14066 ARIH2 ariadne homolog 2 (Drosophila) 344512 1 1 1 3 1 0 0 0 0 0 0.94 1.00 -14067 RNF112 385612 1 1 1 0 0 0 1 0 0 0 0.94 1.00 -14068 FOXO3 forkhead box O3 337652 2 1 2 0 2 0 0 0 0 0 0.94 1.00 -14069 CDH23 cadherin-like 23 2183876 15 11 14 8 5 7 2 1 0 0 0.94 1.00 -14070 TMEM145 transmembrane protein 145 313012 1 1 1 1 0 1 0 0 0 0 0.94 1.00 -14071 JPH3 junctophilin 3 315772 1 1 1 2 1 0 0 0 0 0 0.94 1.00 -14072 CX3CL1 chemokine (C-X3-C motif) ligand 1 270144 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14073 NGEF neuronal guanine nucleotide exchange factor 477652 1 1 1 2 1 0 0 0 0 0 0.94 1.00 -14074 FLCN folliculin 424340 1 1 1 0 0 0 1 0 0 0 0.94 1.00 -14075 LGTN ligatin 406560 1 1 1 2 0 1 0 0 0 0 0.94 1.00 -14076 CELSR1 cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) 1547756 8 8 7 4 3 2 2 0 1 0 0.94 1.00 -14077 VWA3B von Willebrand factor A domain containing 3B 893072 8 4 8 0 1 5 2 0 0 0 0.94 1.00 -14078 PNKP polynucleotide kinase 3'-phosphatase 320536 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14079 SYTL2 synaptotagmin-like 2 1200864 8 4 8 7 1 4 2 0 1 0 0.94 1.00 -14080 PDPR 578888 2 2 2 1 1 1 0 0 0 0 0.94 1.00 -14081 DGCR14 DiGeorge syndrome critical region gene 14 314748 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14082 SFRS14 splicing factor, arginine/serine-rich 14 720804 2 2 2 0 0 1 1 0 0 0 0.94 1.00 -14083 CDK18 332772 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14084 FHOD1 formin homology 2 domain containing 1 776504 4 3 4 1 2 0 1 1 0 0 0.94 1.00 -14085 ATG7 ATG7 autophagy related 7 homolog (S. cerevisiae) 489216 1 1 1 3 0 1 0 0 0 0 0.94 1.00 -14086 ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 576856 3 3 3 0 2 1 0 0 0 0 0.94 1.00 -14087 KRT14 keratin 14 (epidermolysis bullosa simplex, Dowling-Meara, Koebner) 298960 2 1 2 0 0 2 0 0 0 0 0.94 1.00 -14088 MYO19 myosin XIX 659804 3 3 3 0 1 2 0 0 0 0 0.94 1.00 -14089 SP110 SP110 nuclear body protein 510496 1 1 1 4 0 1 0 0 0 0 0.94 1.00 -14090 DPEP3 dipeptidase 3 307748 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14091 HIPK3 homeodomain interacting protein kinase 3 831488 4 3 4 3 1 3 0 0 0 0 0.94 1.00 -14092 ZNF786 zinc finger protein 786 438060 2 2 2 1 2 0 0 0 0 0 0.94 1.00 -14093 SVIL supervillin 1519840 13 7 13 10 5 4 3 1 0 0 0.94 1.00 -14094 VCPIP1 valosin containing protein (p97)/p47 complex interacting protein 1 814296 3 2 3 0 0 0 1 0 2 0 0.94 1.00 -14095 ANKLE1 ankyrin repeat and LEM domain containing 1 300944 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14096 CDK5RAP2 CDK5 regulatory subunit associated protein 2 1306816 7 6 7 6 3 3 1 0 0 0 0.94 1.00 -14097 HMGCS2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial) 350112 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14098 NRP1 neuropilin 1 621376 1 1 1 1 0 0 1 0 0 0 0.94 1.00 -14099 EEF2 eukaryotic translation elongation factor 2 560464 3 3 3 1 2 0 1 0 0 0 0.94 1.00 -14100 ZNF274 zinc finger protein 274 445536 1 1 1 0 0 1 0 0 0 0 0.94 1.00 -14101 SNX29 sorting nexin 29 299936 1 1 1 0 0 1 0 0 0 0 0.94 1.00 -14102 PTGDR prostaglandin D2 receptor (DP) 231280 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14103 RXRA retinoid X receptor, alpha 288316 1 1 1 1 0 1 0 0 0 0 0.94 1.00 -14104 MST1 macrophage stimulating 1 (hepatocyte growth factor-like) 411600 1 1 1 0 0 1 0 0 0 0 0.94 1.00 -14105 EMILIN1 elastin microfibril interfacer 1 493728 1 1 1 0 0 0 0 0 1 0 0.94 1.00 -14106 FLJ43860 811792 3 3 3 4 2 0 1 0 0 0 0.94 1.00 -14107 EPC2 enhancer of polycomb homolog 2 (Drosophila) 527744 1 1 1 0 0 0 1 0 0 0 0.94 1.00 -14108 HSPA12B heat shock 70kD protein 12B 342580 1 1 1 1 1 0 0 0 0 0 0.94 1.00 -14109 LRP5 low density lipoprotein receptor-related protein 5 1020068 5 5 5 4 4 0 0 0 1 0 0.94 1.00 -14110 PHC3 polyhomeotic homolog 3 (Drosophila) 682752 2 2 2 0 0 1 1 0 0 0 0.94 1.00 -14111 CRY2 cryptochrome 2 (photolyase-like) 377076 1 1 1 0 1 0 0 0 0 0 0.94 1.00 -14112 FLI1 Friend leukemia virus integration 1 312480 1 1 1 2 0 1 0 0 0 0 0.94 1.00 -14113 MCF2L MCF.2 cell line derived transforming sequence-like 696392 4 4 4 3 1 1 2 0 0 0 0.94 1.00 -14114 AHDC1 AT hook, DNA binding motif, containing 1 864880 4 4 4 5 2 0 1 0 1 0 0.94 1.00 -14115 HIRA HIR histone cell cycle regulation defective homolog A (S. cerevisiae) 703052 2 2 2 1 1 0 0 0 1 0 0.94 1.00 -14116 CYTSA 756924 2 2 2 0 1 1 0 0 0 0 0.94 1.00 -14117 GALNTL4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 413896 2 2 2 4 1 1 0 0 0 0 0.94 1.00 -14118 HERC1 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 3255200 18 9 18 3 5 8 0 0 1 4 0.94 1.00 -14119 GPR179 G protein-coupled receptor 179 1541412 11 7 11 5 1 5 4 0 1 0 0.94 1.00 -14120 MPHOSPH8 M-phase phosphoprotein 8 591136 1 1 1 1 0 0 0 0 1 0 0.94 1.00 -14121 SLC17A6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 402528 2 1 2 1 0 0 2 0 0 0 0.95 1.00 -14122 UBAP2 ubiquitin associated protein 2 777728 5 3 5 2 1 4 0 0 0 0 0.95 1.00 -14123 ATP1A3 ATPase, Na+/K+ transporting, alpha 3 polypeptide 696688 5 4 5 6 2 3 0 0 0 0 0.95 1.00 -14124 EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 711088 2 2 2 1 0 1 1 0 0 0 0.95 1.00 -14125 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila) 403200 1 1 1 1 0 0 1 0 0 0 0.95 1.00 -14126 ZBTB5 zinc finger and BTB domain containing 5 456512 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14127 LRRC8B leucine rich repeat containing 8 family, member B 542080 1 1 1 1 1 0 0 0 0 0 0.95 1.00 -14128 DPY19L4 dpy-19-like 4 (C. elegans) 499072 1 1 1 1 0 1 0 0 0 0 0.95 1.00 -14129 SLC41A1 solute carrier family 41, member 1 354368 1 1 1 1 0 1 0 0 0 0 0.95 1.00 -14130 MAST3 microtubule associated serine/threonine kinase 3 751180 4 3 4 2 3 0 0 0 1 0 0.95 1.00 -14131 TRAF2 TNF receptor-associated factor 2 346220 1 1 1 2 1 0 0 0 0 0 0.95 1.00 -14132 RASAL1 RAS protein activator like 1 (GAP1 like) 497700 2 2 2 4 0 2 0 0 0 0 0.95 1.00 -14133 SDAD1 SDA1 domain containing 1 482048 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14134 CKAP5 cytoskeleton associated protein 5 1404704 4 4 4 3 2 1 1 0 0 0 0.95 1.00 -14135 SNX8 sorting nexin 8 296916 1 1 1 1 1 0 0 0 0 0 0.95 1.00 -14136 SSH2 slingshot homolog 2 (Drosophila) 962344 4 3 4 1 1 2 1 0 0 0 0.95 1.00 -14137 CNOT4 CCR4-NOT transcription complex, subunit 4 462560 2 1 2 3 1 0 1 0 0 0 0.95 1.00 -14138 CLEC16A C-type lectin domain family 16, member A 695320 5 4 5 5 3 2 0 0 0 0 0.95 1.00 -14139 FGFR1 fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) 616956 4 3 3 4 2 2 0 0 0 0 0.95 1.00 -14140 NOS3 nitric oxide synthase 3 (endothelial cell) 635652 2 2 2 2 1 0 0 0 1 0 0.95 1.00 -14141 SIGLEC1 sialic acid binding Ig-like lectin 1, sialoadhesin 1021272 4 4 4 1 2 1 0 0 1 0 0.95 1.00 -14142 ZDHHC8 zinc finger, DHHC-type containing 8 354004 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14143 ZNF777 zinc finger protein 777 540260 2 2 2 3 1 0 0 1 0 0 0.95 1.00 -14144 ZNF30 zinc finger protein 30 423584 2 1 2 3 1 0 1 0 0 0 0.95 1.00 -14145 ADARB2 adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) 330628 2 2 2 2 2 0 0 0 0 0 0.95 1.00 -14146 MMP24 matrix metallopeptidase 24 (membrane-inserted) 353808 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14147 MYBPC3 myosin binding protein C, cardiac 800212 3 3 3 1 2 0 0 1 0 0 0.95 1.00 -14148 SLC19A1 solute carrier family 19 (folate transporter), member 1 258972 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14149 FGD5 FYVE, RhoGEF and PH domain containing 5 814648 5 4 5 5 0 4 1 0 0 0 0.95 1.00 -14150 ELAC2 elaC homolog 2 (E. coli) 546588 1 1 1 3 0 1 0 0 0 0 0.95 1.00 -14151 GPR56 G protein-coupled receptor 56 478492 2 2 2 1 1 1 0 0 0 0 0.95 1.00 -14152 KIAA0913 KIAA0913 1112728 3 3 3 1 1 1 0 0 1 0 0.95 1.00 -14153 THBS4 thrombospondin 4 646760 2 2 2 6 1 1 0 0 0 0 0.95 1.00 -14154 TRPM4 transient receptor potential cation channel, subfamily M, member 4 768192 2 2 2 0 1 0 0 0 1 0 0.95 1.00 -14155 MYSM1 myb-like, SWIRM and MPN domains 1 575008 2 1 2 3 0 0 1 0 1 0 0.95 1.00 -14156 KIF26A kinesin family member 26A 419832 1 1 1 0 0 0 0 0 1 0 0.95 1.00 -14157 FAM40A family with sequence similarity 40, member A 534312 2 2 2 2 1 0 1 0 0 0 0.95 1.00 -14158 BRSK2 BR serine/threonine kinase 2 342800 1 1 1 0 0 0 1 0 0 0 0.95 1.00 -14159 DLG5 discs, large homolog 5 (Drosophila) 1215504 5 5 5 3 3 1 0 0 1 0 0.95 1.00 -14160 FZD2 frizzled homolog 2 (Drosophila) 349160 2 2 2 5 2 0 0 0 0 0 0.95 1.00 -14161 ZNF574 zinc finger protein 574 597632 3 3 3 0 3 0 0 0 0 0 0.95 1.00 -14162 CNOT3 CCR4-NOT transcription complex, subunit 3 506084 2 2 2 1 1 1 0 0 0 0 0.95 1.00 -14163 CDAN1 congenital dyserythropoietic anemia, type I 735396 3 3 3 0 2 1 0 0 0 0 0.95 1.00 -14164 TLN1 talin 1 1758148 7 7 7 2 3 4 0 0 0 0 0.95 1.00 -14165 USP30 ubiquitin specific peptidase 30 349916 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14166 NOL6 nucleolar protein family 6 (RNA-associated) 793828 4 3 4 1 2 2 0 0 0 0 0.95 1.00 -14167 PWWP2A PWWP domain containing 2A 307868 2 1 2 0 1 1 0 0 0 0 0.95 1.00 -14168 MAPK4 mitogen-activated protein kinase 4 308532 1 1 1 2 1 0 0 0 0 0 0.95 1.00 -14169 IKZF4 IKAROS family zinc finger 4 (Eos) 400960 1 1 1 0 0 1 0 0 0 0 0.95 1.00 -14170 TTC25 tetratricopeptide repeat domain 25 400944 1 1 1 2 0 1 0 0 0 0 0.95 1.00 -14171 ULK1 unc-51-like kinase 1 (C. elegans) 517300 1 1 1 0 0 0 0 0 1 0 0.95 1.00 -14172 MUC4 mucin 4, cell surface associated 1462884 6 5 6 5 0 3 1 0 2 0 0.95 1.00 -14173 CTBP2 C-terminal binding protein 2 558112 2 2 2 3 0 1 1 0 0 0 0.95 1.00 -14174 CDH5 cadherin 5, type 2, VE-cadherin (vascular epithelium) 508116 2 2 2 0 2 0 0 0 0 0 0.95 1.00 -14175 OCLN occludin 422240 1 1 1 1 0 1 0 0 0 0 0.95 1.00 -14176 NUP155 nucleoporin 155kDa 965016 2 2 2 3 0 1 1 0 0 0 0.95 1.00 -14177 FAM120C family with sequence similarity 120C 638176 2 2 2 3 0 1 1 0 0 0 0.95 1.00 -14178 LIN54 lin-54 homolog (C. elegans) 513664 1 1 1 1 0 0 1 0 0 0 0.95 1.00 -14179 VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae) 645208 2 2 2 1 1 1 0 0 0 0 0.95 1.00 -14180 SHROOM1 shroom family member 1 399908 2 2 2 0 1 0 1 0 0 0 0.95 1.00 -14181 TRIM25 tripartite motif-containing 25 399500 1 1 1 2 0 0 1 0 0 0 0.95 1.00 -14182 ZSCAN22 zinc finger and SCAN domain containing 22 332416 1 1 1 2 0 1 0 0 0 0 0.95 1.00 -14183 SRPR signal recognition particle receptor ('docking protein') 437248 1 1 1 1 1 0 0 0 0 0 0.95 1.00 -14184 POU2F1 POU class 2 homeobox 1 513000 1 1 1 2 0 0 1 0 0 0 0.95 1.00 -14185 ATP13A2 ATPase type 13A2 821884 3 3 3 1 1 1 1 0 0 0 0.95 1.00 -14186 MFSD6 537600 2 1 2 0 1 1 0 0 0 0 0.95 1.00 -14187 HIC2 hypermethylated in cancer 2 299236 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14188 PKP1 plakophilin 1 (ectodermal dysplasia/skin fragility syndrome) 512932 2 2 2 1 1 1 0 0 0 0 0.95 1.00 -14189 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 575008 3 2 3 2 1 2 0 0 0 0 0.95 1.00 -14190 LRFN3 leucine rich repeat and fibronectin type III domain containing 3 277060 1 1 1 0 0 1 0 0 0 0 0.95 1.00 -14191 RBBP6 retinoblastoma binding protein 6 1208712 7 4 7 2 2 2 3 0 0 0 0.95 1.00 -14192 SENP6 SUMO1/sentrin specific peptidase 6 761824 2 2 2 0 0 1 0 0 1 0 0.95 1.00 -14193 PFKP phosphofructokinase, platelet 519520 2 2 2 1 2 0 0 0 0 0 0.95 1.00 -14194 ZNF12 zinc finger protein 12 472640 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14195 MARS2 methionyl-tRNA synthetase 2, mitochondrial 381248 1 1 1 1 0 0 1 0 0 0 0.95 1.00 -14196 CCDC135 coiled-coil domain containing 135 580468 1 1 1 2 0 0 1 0 0 0 0.95 1.00 -14197 RBM28 RNA binding motif protein 28 527744 1 1 1 2 0 0 1 0 0 0 0.95 1.00 -14198 MET met proto-oncogene (hepatocyte growth factor receptor) 964768 5 4 5 1 1 1 3 0 0 0 0.95 1.00 -14199 CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) 1850660 9 8 9 5 4 1 2 2 0 0 0.95 1.00 -14200 DAAM1 dishevelled associated activator of morphogenesis 1 747488 2 2 2 2 0 1 1 0 0 0 0.95 1.00 -14201 COL8A1 collagen, type VIII, alpha 1 488556 1 1 1 1 0 0 1 0 0 0 0.95 1.00 -14202 SLC22A2 solute carrier family 22 (organic cation transporter), member 2 379036 1 1 1 0 0 1 0 0 0 0 0.95 1.00 -14203 SMOX spermine oxidase 396392 2 2 2 5 2 0 0 0 0 0 0.95 1.00 -14204 PLVAP plasmalemma vesicle associated protein 293664 1 1 1 1 1 0 0 0 0 0 0.95 1.00 -14205 CCDC96 coiled-coil domain containing 96 269752 1 1 1 2 0 1 0 0 0 0 0.95 1.00 -14206 PTCHD2 patched domain containing 2 915044 5 5 5 0 3 1 1 0 0 0 0.95 1.00 -14207 KRT2 keratin 2 (epidermal ichthyosis bullosa of Siemens) 438144 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14208 DUSP4 dual specificity phosphatase 4 266484 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14209 PIK3CD phosphoinositide-3-kinase, catalytic, delta polypeptide 660744 3 3 3 2 3 0 0 0 0 0 0.95 1.00 -14210 ALPP alkaline phosphatase, placental (Regan isozyme) 316764 1 1 1 1 1 0 0 0 0 0 0.95 1.00 -14211 LDB3 LIM domain binding 3 523720 2 2 2 2 0 1 1 0 0 0 0.95 1.00 -14212 CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta 363492 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -14213 PPP1R10 protein phosphatase 1, regulatory (inhibitor) subunit 10 526096 1 1 1 1 0 1 0 0 0 0 0.95 1.00 -14214 F10 coagulation factor X 312760 1 1 1 3 1 0 0 0 0 0 0.95 1.00 -14215 SMC3 structural maintenance of chromosomes 3 844480 3 3 3 2 0 2 1 0 0 0 0.95 1.00 -14216 FARSA phenylalanyl-tRNA synthetase, alpha subunit 333592 1 1 1 1 1 0 0 0 0 0 0.95 1.00 -14217 SF3B2 splicing factor 3b, subunit 2, 145kDa 613088 2 2 2 7 0 1 1 0 0 0 0.95 1.00 -14218 TMC8 transmembrane channel-like 8 412104 1 1 1 0 0 1 0 0 0 0 0.95 1.00 -14219 PIGQ phosphatidylinositol glycan anchor biosynthesis, class Q 433572 1 1 1 0 0 0 1 0 0 0 0.95 1.00 -14220 KRT77 keratin 77 384304 1 1 1 2 0 0 1 0 0 0 0.95 1.00 -14221 CHM choroideremia (Rab escort protein 1) 451704 1 1 1 1 1 0 0 0 0 0 0.95 1.00 -14222 C11orf9 chromosome 11 open reading frame 9 658724 2 2 2 3 2 0 0 0 0 0 0.95 1.00 -14223 LCMT2 leucine carboxyl methyltransferase 2 406616 2 2 2 0 0 2 0 0 0 0 0.96 1.00 -14224 ZNF750 zinc finger protein 750 480928 2 2 2 2 2 0 0 0 0 0 0.96 1.00 -14225 C2CD2L 434028 1 1 1 1 1 0 0 0 0 0 0.96 1.00 -14226 XPO7 exportin 7 759272 2 1 2 0 0 0 1 0 1 0 0.96 1.00 -14227 FAM160A2 673120 3 3 3 3 2 1 0 0 0 0 0.96 1.00 -14228 RRN3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) 451036 1 1 1 0 0 0 1 0 0 0 0.96 1.00 -14229 ITPKB inositol 1,4,5-trisphosphate 3-kinase B 567084 4 2 4 1 2 1 1 0 0 0 0.96 1.00 -14230 ITGA11 integrin, alpha 11 772952 4 4 4 2 1 1 2 0 0 0 0.96 1.00 -14231 FBLN2 fibulin 2 652236 2 2 2 1 1 1 0 0 0 0 0.96 1.00 -14232 CP110 678188 2 2 2 1 0 1 1 0 0 0 0.96 1.00 -14233 GPC1 glypican 1 265020 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14234 TMPRSS6 transmembrane protease, serine 6 469112 2 2 2 0 1 1 0 0 0 0 0.96 1.00 -14235 KIAA0649 KIAA0649 544908 2 2 2 1 1 1 0 0 0 0 0.96 1.00 -14236 MYO1F myosin IF 734244 3 3 3 4 1 1 0 0 1 0 0.96 1.00 -14237 FUBP3 far upstream element (FUSE) binding protein 3 382368 1 1 1 0 0 1 0 0 0 0 0.96 1.00 -14238 MN1 meningioma (disrupted in balanced translocation) 1 468328 2 2 2 3 0 1 0 0 1 0 0.96 1.00 -14239 XPO1 exportin 1 (CRM1 homolog, yeast) 741888 2 2 2 3 2 0 0 0 0 0 0.96 1.00 -14240 SPIRE2 spire homolog 2 (Drosophila) 317996 1 1 1 0 0 1 0 0 0 0 0.96 1.00 -14241 DCAF5 641080 2 2 2 1 1 1 0 0 0 0 0.96 1.00 -14242 GRHL1 grainyhead-like 1 (Drosophila) 379820 1 1 1 1 1 0 0 0 0 0 0.96 1.00 -14243 STK11IP serine/threonine kinase 11 interacting protein 694664 1 1 1 1 0 0 0 0 1 0 0.96 1.00 -14244 PLCB2 phospholipase C, beta 2 765576 3 3 3 2 1 2 0 0 0 0 0.96 1.00 -14245 PRR12 proline rich 12 813632 2 2 2 0 1 0 0 0 1 0 0.96 1.00 -14246 UTY ubiquitously transcribed tetratricopeptide repeat gene, Y-linked 581980 2 2 2 0 1 1 0 0 0 0 0.96 1.00 -14247 PLXNB1 plexin B1 1347872 5 5 5 1 2 2 1 0 0 0 0.96 1.00 -14248 USP9Y ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila) 1084160 4 3 4 0 0 1 2 0 1 0 0.96 1.00 -14249 CEP152 centrosomal protein 152kDa 1134560 12 5 11 3 6 2 2 0 2 0 0.96 1.00 -14250 CLCN7 chloride channel 7 379196 1 1 1 1 0 1 0 0 0 0 0.96 1.00 -14251 TBCK 579040 1 1 1 1 0 0 1 0 0 0 0.96 1.00 -14252 CAPN9 calpain 9 482272 1 1 1 1 1 0 0 0 0 0 0.96 1.00 -14253 MMP17 matrix metallopeptidase 17 (membrane-inserted) 300580 1 1 1 4 1 0 0 0 0 0 0.96 1.00 -14254 ANKRD28 ankyrin repeat domain 28 713920 2 2 2 1 0 1 1 0 0 0 0.96 1.00 -14255 SLC4A11 solute carrier family 4, sodium borate transporter, member 11 598304 3 3 3 3 1 1 1 0 0 0 0.96 1.00 -14256 AHI1 Abelson helper integration site 1 818552 4 2 4 2 1 1 2 0 0 0 0.96 1.00 -14257 CMIP 475396 2 2 2 0 2 0 0 0 0 0 0.96 1.00 -14258 RALGAPA2 1246720 6 4 6 2 1 3 1 0 1 0 0.96 1.00 -14259 MYH7B myosin, heavy chain 7B, cardiac muscle, beta 1226652 7 6 7 3 3 1 1 0 2 0 0.96 1.00 -14260 NNT nicotinamide nucleotide transhydrogenase 749280 3 2 3 3 2 1 0 0 0 0 0.96 1.00 -14261 PRMT5 protein arginine methyltransferase 5 458080 1 1 1 2 1 0 0 0 0 0 0.96 1.00 -14262 CHRM4 cholinergic receptor, muscarinic 4 292040 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14263 B4GALNT4 beta-1,4-N-acetyl-galactosaminyl transferase 4 333592 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14264 KIF21B kinesin family member 21B 1105176 7 6 7 2 4 3 0 0 0 0 0.96 1.00 -14265 POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 1346156 6 6 6 2 3 1 1 1 0 0 0.96 1.00 -14266 DDHD1 DDHD domain containing 1 572444 3 2 3 0 1 0 1 0 1 0 0.96 1.00 -14267 THSD4 thrombospondin, type I, domain containing 4 617344 2 2 2 2 1 1 0 0 0 0 0.96 1.00 -14268 C2orf85 279240 1 1 1 1 1 0 0 0 0 0 0.96 1.00 -14269 WDR90 WD repeat domain 90 767788 2 2 2 1 0 0 0 1 1 0 0.96 1.00 -14270 PNPLA6 patatin-like phospholipase domain containing 6 831568 3 3 3 3 1 0 0 0 2 0 0.96 1.00 -14271 SLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 700752 2 2 2 2 2 0 0 0 0 0 0.96 1.00 -14272 WDR27 WD repeat domain 27 562680 2 2 2 3 2 0 0 0 0 0 0.96 1.00 -14273 ALPL alkaline phosphatase, liver/bone/kidney 342076 1 1 1 0 0 1 0 0 0 0 0.96 1.00 -14274 AKAP8L A kinase (PRKA) anchor protein 8-like 377324 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14275 PTPN5 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 374808 1 1 1 1 1 0 0 0 0 0 0.96 1.00 -14276 ACE angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 846536 2 2 2 1 0 1 0 0 1 0 0.96 1.00 -14277 MZF1 myeloid zinc finger 1 348880 1 1 1 1 0 0 1 0 0 0 0.96 1.00 -14278 DAPK3 death-associated protein kinase 3 264404 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14279 MDC1 mediator of DNA damage checkpoint 1 1128316 4 4 4 2 2 1 0 0 1 0 0.96 1.00 -14280 RAP1GAP RAP1 GTPase activating protein 483632 3 2 3 0 1 1 1 0 0 0 0.96 1.00 -14281 VEZT vezatin, adherens junctions transmembrane protein 524032 1 1 1 0 0 1 0 0 0 0 0.96 1.00 -14282 FAM161B 443520 1 1 1 1 0 0 1 0 0 0 0.96 1.00 -14283 MEX3A mex-3 homolog A (C. elegans) 237588 1 1 1 2 1 0 0 0 0 0 0.96 1.00 -14284 KIAA0226 KIAA0226 656152 3 3 3 0 3 0 0 0 0 0 0.96 1.00 -14285 DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like 1159040 5 3 5 2 0 2 2 0 1 0 0.96 1.00 -14286 FUT11 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) 260544 1 1 1 0 0 1 0 0 0 0 0.96 1.00 -14287 SNCAIP synuclein, alpha interacting protein (synphilin) 627200 3 2 3 2 1 1 1 0 0 0 0.96 1.00 -14288 MAPK15 mitogen-activated protein kinase 15 335952 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14289 TTLL8 tubulin tyrosine ligase-like family, member 8 393644 1 1 1 0 0 1 0 0 0 0 0.96 1.00 -14290 PFKM phosphofructokinase, muscle 594048 4 2 4 1 1 3 0 0 0 0 0.96 1.00 -14291 ZBTB48 zinc finger and BTB domain containing 48 438032 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14292 PTCD1 pentatricopeptide repeat domain 1 467740 1 1 1 2 0 0 1 0 0 0 0.96 1.00 -14293 SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 408408 2 2 2 2 2 0 0 0 0 0 0.96 1.00 -14294 PLEKHM3 pleckstrin homology domain containing, family M, member 3 512488 1 1 1 1 1 0 0 0 0 0 0.96 1.00 -14295 DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 604800 3 1 3 1 0 1 1 0 1 0 0.96 1.00 -14296 CCDC33 coiled-coil domain containing 33 583968 1 1 1 1 0 0 1 0 0 0 0.96 1.00 -14297 PTBP1 polypyrimidine tract binding protein 1 354144 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -14298 MEFV Mediterranean fever 495964 2 2 2 4 1 1 0 0 0 0 0.96 1.00 -14299 GOLGA3 golgi autoantigen, golgin subfamily a, 3 1007500 3 3 3 1 1 1 0 0 1 0 0.96 1.00 -14300 HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 526568 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14301 ALPPL2 alkaline phosphatase, placental-like 2 270668 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14302 ITPKC inositol 1,4,5-trisphosphate 3-kinase C 397768 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14303 CCDC157 383316 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14304 TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) 535444 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14305 SHROOM3 shroom family member 3 1149788 4 4 4 2 2 1 1 0 0 0 0.97 1.00 -14306 WDR67 WD repeat domain 67 720440 2 2 2 2 0 1 1 0 0 0 0.97 1.00 -14307 NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 483652 2 2 2 0 2 0 0 0 0 0 0.97 1.00 -14308 DLEC1 deleted in lung and esophageal cancer 1 1251040 4 4 4 6 1 2 0 0 1 0 0.97 1.00 -14309 CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 768152 3 3 3 3 1 1 1 0 0 0 0.97 1.00 -14310 ACCN2 amiloride-sensitive cation channel 2, neuronal 393148 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14311 NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 1053328 5 2 5 2 0 3 2 0 0 0 0.97 1.00 -14312 ZNF526 zinc finger protein 526 443996 1 1 1 2 1 0 0 0 0 0 0.97 1.00 -14313 IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 408424 1 1 1 1 0 1 0 0 0 0 0.97 1.00 -14314 TCF25 transcription factor 25 (basic helix-loop-helix) 434392 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14315 CLASP2 cytoplasmic linker associated protein 2 995768 5 3 5 2 0 4 1 0 0 0 0.97 1.00 -14316 DSTYK 623068 2 2 2 0 0 2 0 0 0 0 0.97 1.00 -14317 GFAP glial fibrillary acidic protein 314076 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14318 ATP7B ATPase, Cu++ transporting, beta polypeptide 1003968 4 4 4 1 0 3 1 0 0 0 0.97 1.00 -14319 MYO3B myosin IIIB 933184 7 3 7 3 2 2 3 0 0 0 0.97 1.00 -14320 RUVBL2 RuvB-like 2 (E. coli) 310884 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14321 FHDC1 FH2 domain containing 1 736960 5 3 4 1 2 1 1 0 1 0 0.97 1.00 -14322 ZBTB22 zinc finger and BTB domain containing 22 418040 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14323 MTMR14 myotubularin related protein 14 434252 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14324 KLHL11 kelch-like 11 (Drosophila) 439180 1 1 1 1 0 0 1 0 0 0 0.97 1.00 -14325 SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 707056 2 2 2 3 1 1 0 0 0 0 0.97 1.00 -14326 SYNJ2 synaptojanin 2 983628 6 4 6 5 2 2 1 0 1 0 0.97 1.00 -14327 RERE arginine-glutamic acid dipeptide (RE) repeats 798748 3 3 3 2 1 1 0 0 1 0 0.97 1.00 -14328 GRB7 growth factor receptor-bound protein 7 367204 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14329 AP1B1 adaptor-related protein complex 1, beta 1 subunit 634516 1 1 1 4 0 0 1 0 0 0 0.97 1.00 -14330 COPG coatomer protein complex, subunit gamma 603928 3 2 3 2 1 1 0 1 0 0 0.97 1.00 -14331 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 386072 1 1 1 2 1 0 0 0 0 0 0.97 1.00 -14332 PTRF polymerase I and transcript release factor 245924 2 1 2 2 2 0 0 0 0 0 0.97 1.00 -14333 SMG1 2217680 13 8 13 4 6 3 3 0 1 0 0.97 1.00 -14334 PAK6 p21(CDKN1A)-activated kinase 6 409976 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14335 ITFG3 integrin alpha FG-GAP repeat containing 3 375592 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14336 CES2 carboxylesterase 2 (intestine, liver) 421828 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14337 ADCY3 adenylate cyclase 3 765664 2 2 2 5 2 0 0 0 0 0 0.97 1.00 -14338 PRDM16 PR domain containing 16 756600 3 3 3 4 1 1 0 0 1 0 0.97 1.00 -14339 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 421424 1 1 1 1 0 0 1 0 0 0 0.97 1.00 -14340 ZYX zyxin 342548 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14341 SCARB1 scavenger receptor class B, member 1 350024 1 1 1 3 1 0 0 0 0 0 0.97 1.00 -14342 SLC12A8 solute carrier family 12 (potassium/chloride transporters), member 8 492128 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14343 C16orf62 chromosome 16 open reading frame 62 675584 2 2 2 4 1 0 1 0 0 0 0.97 1.00 -14344 KRBA1 KRAB-A domain containing 1 534264 1 1 1 1 0 0 1 0 0 0 0.97 1.00 -14345 ZNF324B zinc finger protein 324B 345240 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14346 ZMIZ1 zinc finger, MIZ-type containing 1 704592 3 3 3 2 1 1 1 0 0 0 0.97 1.00 -14347 SUN1 548568 2 1 2 5 0 1 0 0 1 0 0.97 1.00 -14348 VARS valyl-tRNA synthetase 650300 1 1 1 0 0 0 0 0 1 0 0.97 1.00 -14349 RAI1 retinoic acid induced 1 1088332 6 5 6 1 1 2 2 0 1 0 0.97 1.00 -14350 SLC27A4 solute carrier family 27 (fatty acid transporter), member 4 434196 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14351 OSBPL9 oxysterol binding protein-like 9 523712 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14352 MAST2 microtubule associated serine/threonine kinase 2 1182176 5 4 5 3 3 1 1 0 0 0 0.97 1.00 -14353 ADCY10 adenylate cyclase 10 (soluble) 1111264 5 4 5 6 2 2 1 0 0 0 0.97 1.00 -14354 MEGF8 multiple EGF-like-domains 8 1616332 10 8 10 5 6 2 1 0 1 0 0.97 1.00 -14355 ATP13A3 ATPase type 13A3 852320 2 2 2 1 0 1 1 0 0 0 0.97 1.00 -14356 PHF12 PHD finger protein 12 694624 2 2 2 4 1 0 1 0 0 0 0.97 1.00 -14357 DCTN1 dynactin 1 (p150, glued homolog, Drosophila) 886592 4 3 4 3 2 2 0 0 0 0 0.97 1.00 -14358 ADARB1 adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) 472388 1 1 1 2 1 0 0 0 0 0 0.97 1.00 -14359 OTUD7A OTU domain containing 7A 431536 2 2 2 2 1 1 0 0 0 0 0.97 1.00 -14360 SLC39A4 solute carrier family 39 (zinc transporter), member 4 306624 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14361 PCNXL3 pecanex-like 3 (Drosophila) 1044776 3 3 3 3 1 1 0 0 1 0 0.97 1.00 -14362 FAM63B family with sequence similarity 63, member B 385896 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14363 PREPL prolyl endopeptidase-like 501760 2 1 2 1 1 0 1 0 0 0 0.97 1.00 -14364 ZFYVE28 zinc finger, FYVE domain containing 28 519400 1 1 1 1 0 1 0 0 0 0 0.97 1.00 -14365 ANO7 582512 3 2 3 2 0 2 1 0 0 0 0.97 1.00 -14366 BAI1 brain-specific angiogenesis inhibitor 1 654440 2 2 2 0 1 1 0 0 0 0 0.97 1.00 -14367 APEH N-acylaminoacyl-peptide hydrolase 482916 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14368 KIAA0415 KIAA0415 382376 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14369 C2 complement component 2 400204 4 1 4 3 1 2 1 0 0 0 0.97 1.00 -14370 PELP1 proline, glutamate and leucine rich protein 1 663860 2 1 2 0 1 0 1 0 0 0 0.97 1.00 -14371 IL4R interleukin 4 receptor 563136 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14372 CNNM4 cyclin M4 495668 1 1 1 0 0 0 1 0 0 0 0.97 1.00 -14373 NUP214 nucleoporin 214kDa 1430744 6 5 6 3 0 2 4 0 0 0 0.97 1.00 -14374 TBC1D9B TBC1 domain family, member 9B (with GRAM domain) 803948 2 2 2 0 0 2 0 0 0 0 0.97 1.00 -14375 PNMAL2 PNMA-like 2 345968 2 2 2 2 1 1 0 0 0 0 0.97 1.00 -14376 PDE8A phosphodiesterase 8A 534912 1 1 1 3 0 1 0 0 0 0 0.97 1.00 -14377 CACNB1 calcium channel, voltage-dependent, beta 1 subunit 453672 1 1 1 2 0 0 1 0 0 0 0.97 1.00 -14378 DTNB dystrobrevin, beta 429112 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14379 MGAT4B mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B 346864 1 1 1 1 1 0 0 0 0 0 0.97 1.00 -14380 ATP10B ATPase, class V, type 10B 1002176 3 3 3 1 2 0 1 0 0 0 0.97 1.00 -14381 MLXIPL MLX interacting protein-like 462724 1 1 1 0 1 0 0 0 0 0 0.97 1.00 -14382 POMT2 protein-O-mannosyltransferase 2 466460 1 1 1 0 0 1 0 0 0 0 0.97 1.00 -14383 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 726884 1 1 1 3 0 0 0 1 0 0 0.98 1.00 -14384 EPS15L1 epidermal growth factor receptor pathway substrate 15-like 1 593600 3 2 3 0 1 1 1 0 0 0 0.98 1.00 -14385 ANAPC1 anaphase promoting complex subunit 1 1085420 4 3 4 2 1 2 1 0 0 0 0.98 1.00 -14386 ABP1 amiloride binding protein 1 (amine oxidase (copper-containing)) 477680 1 1 1 2 1 0 0 0 0 0 0.98 1.00 -14387 KCNC4 potassium voltage-gated channel, Shaw-related subfamily, member 4 403116 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14388 NBAS 1640576 8 5 8 5 0 4 2 0 2 0 0.98 1.00 -14389 SPHK2 sphingosine kinase 2 356832 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14390 CNST 499072 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14391 KIAA1244 KIAA1244 1380108 8 5 8 2 6 1 1 0 0 0 0.98 1.00 -14392 ZNF76 zinc finger protein 76 (expressed in testis) 391580 2 1 2 2 1 1 0 0 0 0 0.98 1.00 -14393 TACC3 transforming, acidic coiled-coil containing protein 3 496588 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14394 RHBDF1 rhomboid 5 homolog 1 (Drosophila) 494936 2 2 2 0 2 0 0 0 0 0 0.98 1.00 -14395 WNK2 WNK lysine deficient protein kinase 2 1101548 4 4 4 0 2 0 0 0 2 0 0.98 1.00 -14396 UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) 735140 3 3 3 4 1 1 1 0 0 0 0.98 1.00 -14397 EPHB3 EPH receptor B3 632464 2 2 2 2 1 0 1 0 0 0 0.98 1.00 -14398 FAM65C 600260 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14399 PANK4 pantothenate kinase 4 413224 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14400 SIK1 348388 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14401 SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B 366996 1 1 1 1 0 0 1 0 0 0 0.98 1.00 -14402 PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 674624 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14403 FAM73B family with sequence similarity 73, member B 399872 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14404 IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein 928032 2 2 2 2 2 0 0 0 0 0 0.98 1.00 -14405 LSR lipolysis stimulated lipoprotein receptor 373660 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14406 RALGDS ral guanine nucleotide dissociation stimulator 507628 1 1 1 2 1 0 0 0 0 0 0.98 1.00 -14407 SREBF1 sterol regulatory element binding transcription factor 1 564188 1 1 1 1 0 1 0 0 0 0 0.98 1.00 -14408 PCSK9 proprotein convertase subtilisin/kexin type 9 396572 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14409 USP37 ubiquitin specific peptidase 37 679168 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14410 ZNF839 565376 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14411 KAT2A 478336 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14412 DMBT1 deleted in malignant brain tumors 1 1263024 7 4 7 6 3 2 0 1 1 0 0.98 1.00 -14413 DAGLA diacylglycerol lipase, alpha 644000 2 2 2 1 2 0 0 0 0 0 0.98 1.00 -14414 ELFN2 extracellular leucine-rich repeat and fibronectin type III domain containing 2 442344 1 1 1 2 1 0 0 0 0 0 0.98 1.00 -14415 UBE2O ubiquitin-conjugating enzyme E2O 779844 2 2 2 1 1 1 0 0 0 0 0.98 1.00 -14416 ANAPC2 anaphase promoting complex subunit 2 482608 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14417 HTT huntingtin 2085308 12 8 11 9 9 2 0 0 1 0 0.98 1.00 -14418 INSM2 insulinoma-associated 2 255864 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14419 ABCA7 ATP-binding cassette, sub-family A (ABC1), member 7 1102900 5 5 5 1 2 1 1 0 1 0 0.98 1.00 -14420 ZBTB49 521024 1 1 1 3 0 0 1 0 0 0 0.98 1.00 -14421 SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) 539260 1 1 1 1 0 1 0 0 0 0 0.98 1.00 -14422 SLMAP sarcolemma associated protein 564480 1 1 1 2 0 1 0 0 0 0 0.98 1.00 -14423 ELN elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) 503612 1 1 1 3 0 1 0 0 0 0 0.98 1.00 -14424 ANO1 613604 1 1 1 3 0 1 0 0 0 0 0.98 1.00 -14425 PIGG phosphatidylinositol glycan anchor biosynthesis, class G 657692 3 2 3 2 2 1 0 0 0 0 0.98 1.00 -14426 AHRR aryl-hydrocarbon receptor repressor 458836 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14427 TSC22D1 TSC22 domain family, member 1 738840 2 2 2 2 0 1 1 0 0 0 0.98 1.00 -14428 KANK1 KN motif and ankyrin repeat domains 1 919072 4 3 4 5 3 0 0 0 1 0 0.98 1.00 -14429 CTTN cortactin 425864 1 1 1 2 0 0 1 0 0 0 0.98 1.00 -14430 ZNF263 zinc finger protein 263 463512 4 1 4 0 2 2 0 0 0 0 0.98 1.00 -14431 CDC42BPG CDC42 binding protein kinase gamma (DMPK-like) 843700 3 3 3 2 3 0 0 0 0 0 0.98 1.00 -14432 ZBTB38 zinc finger and BTB domain containing 38 804608 2 2 2 1 1 1 0 0 0 0 0.98 1.00 -14433 MUC6 mucin 6, oligomeric mucus/gel-forming 1415928 5 5 5 2 3 1 0 0 1 0 0.98 1.00 -14434 PPAN-P2RY11 PPAN-P2RY11 467472 1 1 1 1 0 0 0 0 1 0 0.98 1.00 -14435 CAMSAP1L1 calmodulin regulated spectrin-associated protein 1-like 1 1009120 2 2 2 2 2 0 0 0 0 0 0.98 1.00 -14436 SH3BP2 SH3-domain binding protein 2 373244 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14437 SGSM2 small G protein signaling modulator 2 673948 1 1 1 2 0 0 0 0 1 0 0.98 1.00 -14438 TRMT1 TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae) 444872 1 1 1 1 0 0 1 0 0 0 0.98 1.00 -14439 SEC24A SEC24 related gene family, member A (S. cerevisiae) 755776 4 2 4 0 2 1 1 0 0 0 0.98 1.00 -14440 PYGL phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI) 587692 2 1 2 5 0 0 2 0 0 0 0.98 1.00 -14441 RBM47 RNA binding motif protein 47 370668 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14442 ZNF862 712716 3 3 3 2 1 1 1 0 0 0 0.98 1.00 -14443 CDHR2 903464 2 2 2 4 2 0 0 0 0 0 0.98 1.00 -14444 SYMPK symplekin 796324 5 2 5 2 1 1 2 0 1 0 0.98 1.00 -14445 DLG4 discs, large homolog 4 (Drosophila) 519100 3 2 3 1 3 0 0 0 0 0 0.98 1.00 -14446 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 1784412 9 4 9 4 3 4 1 0 1 0 0.98 1.00 -14447 CEP72 centrosomal protein 72kDa 426944 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14448 KIF19 kinesin family member 19 505404 2 2 2 1 0 2 0 0 0 0 0.98 1.00 -14449 PLEKHH1 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 934480 2 2 2 1 0 1 1 0 0 0 0.98 1.00 -14450 C10orf18 chromosome 10 open reading frame 18 1649760 8 5 8 2 3 3 1 0 1 0 0.98 1.00 -14451 STXBP5 syntaxin binding protein 5 (tomosyn) 772912 4 2 4 2 2 1 1 0 0 0 0.98 1.00 -14452 USP42 ubiquitin specific peptidase 42 702824 2 2 2 1 1 0 1 0 0 0 0.98 1.00 -14453 SGK269 1177568 3 3 3 2 0 1 1 1 0 0 0.98 1.00 -14454 SAPS2 SAPS domain family, member 2 565684 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14455 KANK2 KN motif and ankyrin repeat domains 2 517524 1 1 1 0 0 0 1 0 0 0 0.98 1.00 -14456 LRRN2 leucine rich repeat neuronal 2 480704 1 1 1 2 1 0 0 0 0 0 0.98 1.00 -14457 MED25 mediator complex subunit 25 459620 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14458 CASC3 cancer susceptibility candidate 3 453236 1 1 1 2 1 0 0 0 0 0 0.98 1.00 -14459 INPP5B inositol polyphosphate-5-phosphatase, 75kDa 634816 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14460 MMEL1 membrane metallo-endopeptidase-like 1 491340 1 1 1 0 1 0 0 0 0 0 0.98 1.00 -14461 CC2D1A coiled-coil and C2 domain containing 1A 632324 2 2 2 1 1 1 0 0 0 0 0.98 1.00 -14462 KIAA0284 KIAA0284 442464 2 2 2 0 2 0 0 0 0 0 0.98 1.00 -14463 ZFYVE26 zinc finger, FYVE domain containing 26 1743616 9 7 9 0 2 4 3 0 0 0 0.98 1.00 -14464 BAT3 HLA-B associated transcript 3 573472 2 2 2 1 0 1 1 0 0 0 0.98 1.00 -14465 JHDM1D jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) 630168 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14466 ANKRD34A ankyrin repeat domain 34A 334040 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14467 BAHCC1 BAH domain and coiled-coil containing 1 658332 1 1 1 0 0 0 0 0 1 0 0.98 1.00 -14468 TTLL5 tubulin tyrosine ligase-like family, member 5 889280 2 2 2 1 1 0 1 0 0 0 0.98 1.00 -14469 GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa 509768 1 1 1 3 1 0 0 0 0 0 0.98 1.00 -14470 KIF1B kinesin family member 1B 1564864 7 6 7 5 4 3 0 0 0 0 0.98 1.00 -14471 DBN1 drebrin 1 420040 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14472 SIPA1 signal-induced proliferation-associated gene 1 393632 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14473 MED16 mediator complex subunit 16 402696 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14474 RAP1GAP2 460632 2 1 2 3 1 1 0 0 0 0 0.98 1.00 -14475 UBA1 ubiquitin-like modifier activating enzyme 1 719360 2 2 2 3 1 1 0 0 0 0 0.98 1.00 -14476 LAMB2 laminin, beta 2 (laminin S) 1213828 5 4 5 1 0 3 1 0 1 0 0.98 1.00 -14477 BTBD12 BTB (POZ) domain containing 12 1192268 3 3 3 0 0 2 1 0 0 0 0.98 1.00 -14478 TRAP1 TNF receptor-associated protein 1 468272 1 1 1 2 1 0 0 0 0 0 0.98 1.00 -14479 RLTPR RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing 809640 2 2 2 1 1 0 1 0 0 0 0.98 1.00 -14480 ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3 1134428 6 5 6 4 4 1 1 0 0 0 0.98 1.00 -14481 GPR124 G protein-coupled receptor 124 614324 1 1 1 1 1 0 0 0 0 0 0.98 1.00 -14482 CCDC151 coiled-coil domain containing 151 400176 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14483 WNK4 WNK lysine deficient protein kinase 4 808616 2 2 2 3 1 0 0 0 1 0 0.98 1.00 -14484 ZBTB17 zinc finger and BTB domain containing 17 511424 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -14485 FZD1 frizzled homolog 1 (Drosophila) 353276 1 1 1 3 1 0 0 0 0 0 0.98 1.00 -14486 COASY Coenzyme A synthase 407204 1 1 1 1 0 1 0 0 0 0 0.98 1.00 -14487 COPA coatomer protein complex, subunit alpha 858816 2 2 2 0 1 1 0 0 0 0 0.98 1.00 -14488 ZFYVE20 zinc finger, FYVE domain containing 20 537376 2 1 2 0 0 2 0 0 0 0 0.99 1.00 -14489 CYTSB 736736 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14490 MGRN1 mahogunin, ring finger 1 349972 2 1 2 0 1 1 0 0 0 0 0.99 1.00 -14491 NYNRIN 1270820 6 5 6 2 1 4 1 0 0 0 0.99 1.00 -14492 CHD8 chromodomain helicase DNA binding protein 8 1606360 6 6 6 0 2 3 1 0 0 0 0.99 1.00 -14493 VCL vinculin 766536 2 2 2 1 2 0 0 0 0 0 0.99 1.00 -14494 DUS3L dihydrouridine synthase 3-like (S. cerevisiae) 342692 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14495 BAIAP3 BAI1-associated protein 3 538424 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14496 DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33 455840 1 1 1 1 0 1 0 0 0 0 0.99 1.00 -14497 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 752816 2 2 2 0 1 0 0 0 1 0 0.99 1.00 -14498 CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 477136 3 2 3 3 2 1 0 0 0 0 0.99 1.00 -14499 ALG13 asparagine-linked glycosylation 13 homolog (S. cerevisiae) 738064 1 1 1 0 0 0 1 0 0 0 0.99 1.00 -14500 AP3B2 adaptor-related protein complex 3, beta 2 subunit 693144 2 2 2 1 1 0 1 0 0 0 0.99 1.00 -14501 MYO1G myosin IG 618904 2 2 2 0 2 0 0 0 0 0 0.99 1.00 -14502 ASAP3 594100 1 1 1 0 0 0 0 0 1 0 0.99 1.00 -14503 MAP7D1 MAP7 domain containing 1 434088 1 1 1 2 1 0 0 0 0 0 0.99 1.00 -14504 DNAH1 dynein, axonemal, heavy chain 1 2813948 19 13 19 1 10 3 6 0 0 0 0.99 1.00 -14505 PAPLN papilin, proteoglycan-like sulfated glycoprotein 799844 2 2 2 2 0 1 1 0 0 0 0.99 1.00 -14506 SCRIB scribbled homolog (Drosophila) 801440 2 2 2 1 1 0 1 0 0 0 0.99 1.00 -14507 PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 530256 1 1 1 1 1 0 0 0 0 0 0.99 1.00 -14508 MTMR15 myotubularin related protein 15 697984 1 1 1 0 0 1 0 0 0 0 0.99 1.00 -14509 FBF1 Fas (TNFRSF6) binding factor 1 636996 2 2 2 1 1 1 0 0 0 0 0.99 1.00 -14510 WDR6 WD repeat domain 6 761464 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14511 DENND1C DENN/MADD domain containing 1C 529284 4 1 4 2 1 1 2 0 0 0 0.99 1.00 -14512 USP35 ubiquitin specific peptidase 35 573860 1 1 1 2 0 0 0 0 1 0 0.99 1.00 -14513 TTF2 transcription termination factor, RNA polymerase II 802144 4 2 4 3 0 4 0 0 0 0 0.99 1.00 -14514 CARD10 caspase recruitment domain family, member 10 526308 1 1 1 0 0 0 1 0 0 0 0.99 1.00 -14515 RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 521868 1 1 1 2 1 0 0 0 0 0 0.99 1.00 -14516 PIK3R5 phosphoinositide-3-kinase, regulatory subunit 5 581868 1 1 1 1 1 0 0 0 0 0 0.99 1.00 -14517 FAM83H family with sequence similarity 83, member H 402136 1 1 1 0 0 0 1 0 0 0 0.99 1.00 -14518 PLA2G4E phospholipase A2, group IVE 556616 2 1 2 2 0 2 0 0 0 0 0.99 1.00 -14519 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 874768 2 2 2 2 1 0 1 0 0 0 0.99 1.00 -14520 ZC3H7A zinc finger CCCH-type containing 7A 672896 1 1 1 1 0 1 0 0 0 0 0.99 1.00 -14521 GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 525648 1 1 1 0 0 1 0 0 0 0 0.99 1.00 -14522 RASAL3 483480 1 1 1 1 0 1 0 0 0 0 0.99 1.00 -14523 TLN2 talin 2 1755156 9 7 9 12 4 4 1 0 0 0 0.99 1.00 -14524 RSBN1L round spermatid basic protein 1-like 549332 2 1 2 0 0 2 0 0 0 0 0.99 1.00 -14525 PFKL phosphofructokinase, liver 424900 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14526 SART3 squamous cell carcinoma antigen recognized by T cells 3 664832 2 2 2 2 1 0 1 0 0 0 0.99 1.00 -14527 SEC31B SEC31 homolog B (S. cerevisiae) 814016 1 1 1 2 0 0 0 0 1 0 0.99 1.00 -14528 LRRN4 387604 1 1 1 2 1 0 0 0 0 0 0.99 1.00 -14529 TCF3 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) 393008 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14530 THADA thyroid adenoma associated 1284920 6 4 6 2 0 6 0 0 0 0 0.99 1.00 -14531 MYO15A myosin XVA 1948668 11 10 11 5 7 2 1 0 1 0 0.99 1.00 -14532 SH2D3C SH2 domain containing 3C 573140 2 2 2 2 0 2 0 0 0 0 0.99 1.00 -14533 DLGAP4 discs, large (Drosophila) homolog-associated protein 4 687596 2 2 2 1 1 0 1 0 0 0 0.99 1.00 -14534 GTSE1 G-2 and S-phase expressed 1 473788 2 1 2 2 0 2 0 0 0 0 0.99 1.00 -14535 NLRP6 NLR family, pyrin domain containing 6 367156 1 1 1 0 0 1 0 0 0 0 0.99 1.00 -14536 EML3 echinoderm microtubule associated protein like 3 544684 1 1 1 0 0 1 0 0 0 0 0.99 1.00 -14537 IQSEC3 IQ motif and Sec7 domain 3 553924 2 2 2 3 2 0 0 0 0 0 0.99 1.00 -14538 MAN2B2 mannosidase, alpha, class 2B, member 2 659064 1 1 1 2 0 1 0 0 0 0 0.99 1.00 -14539 ZMIZ2 zinc finger, MIZ-type containing 2 586600 1 1 1 3 1 0 0 0 0 0 0.99 1.00 -14540 GMIP GEM interacting protein 591724 1 1 1 1 0 0 1 0 0 0 0.99 1.00 -14541 LRP1 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 3090416 18 13 18 9 11 2 3 0 2 0 0.99 1.00 -14542 MYBPC2 myosin binding protein C, fast type 720008 4 3 4 3 2 2 0 0 0 0 0.99 1.00 -14543 WDR60 WD repeat domain 60 690896 1 1 1 1 1 0 0 0 0 0 0.99 1.00 -14544 HOOK2 hook homolog 2 (Drosophila) 456596 1 1 1 1 0 1 0 0 0 0 0.99 1.00 -14545 CEP250 centrosomal protein 250kDa 1651516 8 4 8 5 2 3 1 0 2 0 0.99 1.00 -14546 KIAA0317 KIAA0317 569856 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14547 PTPRB protein tyrosine phosphatase, receptor type, B 1511800 4 4 4 4 1 1 2 0 0 0 0.99 1.00 -14548 LMTK3 lemur tyrosine kinase 3 467896 1 1 1 0 0 1 0 0 0 0 0.99 1.00 -14549 EVPL envoplakin 1270796 5 5 5 3 0 3 1 1 0 0 0.99 1.00 -14550 SYNE2 spectrin repeat containing, nuclear envelope 2 4755296 24 11 23 10 6 12 2 0 2 2 0.99 1.00 -14551 ARHGAP32 1422032 5 5 4 3 5 0 0 0 0 0 0.99 1.00 -14552 PLCH2 phospholipase C, eta 2 610332 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14553 SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 522256 1 1 1 1 0 1 0 0 0 0 0.99 1.00 -14554 CCDC87 coiled-coil domain containing 87 506660 1 1 1 3 1 0 0 0 0 0 0.99 1.00 -14555 APP amyloid beta (A4) precursor protein (peptidase nexin-II, Alzheimer disease) 520576 1 1 1 2 1 0 0 0 0 0 0.99 1.00 -14556 DOPEY2 dopey family member 2 1546424 5 5 5 1 1 1 2 0 1 0 0.99 1.00 -14557 ANKRD11 ankyrin repeat domain 11 1603444 9 7 9 8 5 4 0 0 0 0 0.99 1.00 -14558 RRP12 ribosomal RNA processing 12 homolog (S. cerevisiae) 881636 1 1 1 1 0 0 0 0 1 0 0.99 1.00 -14559 RREB1 ras responsive element binding protein 1 969356 3 3 3 0 1 2 0 0 0 0 0.99 1.00 -14560 KIAA0664 KIAA0664 767756 4 2 4 2 3 0 0 0 1 0 0.99 1.00 -14561 CILP2 cartilage intermediate layer protein 2 596148 2 2 2 1 2 0 0 0 0 0 0.99 1.00 -14562 NUP210 nucleoporin 210kDa 1282536 4 4 4 4 2 0 2 0 0 0 0.99 1.00 -14563 PEX6 peroxisomal biogenesis factor 6 563128 1 1 1 1 1 0 0 0 0 0 0.99 1.00 -14564 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 632128 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14565 BAZ2B bromodomain adjacent to zinc finger domain, 2B 1487024 6 4 6 1 3 2 1 0 0 0 0.99 1.00 -14566 COL20A1 collagen, type XX, alpha 1 728404 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14567 RBM14 RNA binding motif protein 14 418572 1 1 1 2 1 0 0 0 0 0 0.99 1.00 -14568 MYO18A myosin XVIIIA 1339148 5 4 5 0 2 2 0 0 1 0 0.99 1.00 -14569 VAC14 Vac14 homolog (S. cerevisiae) 531968 1 1 1 0 0 1 0 0 0 0 0.99 1.00 -14570 MAML3 mastermind-like 3 (Drosophila) 709672 1 1 1 2 1 0 0 0 0 0 0.99 1.00 -14571 AZI1 5-azacytidine induced 1 593548 1 1 1 0 0 0 1 0 0 0 0.99 1.00 -14572 KIAA0430 KIAA0430 1195264 2 2 2 0 1 0 1 0 0 0 0.99 1.00 -14573 PER2 period homolog 2 (Drosophila) 839272 2 2 2 1 2 0 0 0 0 0 0.99 1.00 -14574 DENND2A DENN/MADD domain containing 2A 686148 1 1 1 6 1 0 0 0 0 0 0.99 1.00 -14575 EEF2K eukaryotic elongation factor-2 kinase 503104 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14576 GCN1L1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) 1839452 9 6 9 5 2 1 5 0 1 0 0.99 1.00 -14577 HDAC5 histone deacetylase 5 705068 2 2 1 2 2 0 0 0 0 0 0.99 1.00 -14578 TAOK2 TAO kinase 2 973420 3 3 3 3 2 0 1 0 0 0 0.99 1.00 -14579 XPO5 exportin 5 836800 1 1 1 3 0 0 0 0 1 0 0.99 1.00 -14580 WDR59 WD repeat domain 59 669928 1 1 1 3 1 0 0 0 0 0 0.99 1.00 -14581 ZSWIM4 zinc finger, SWIM-type containing 4 586432 2 2 2 0 1 1 0 0 0 0 0.99 1.00 -14582 PSD3 pleckstrin and Sec7 domain containing 3 724556 2 1 2 0 0 2 0 0 0 0 0.99 1.00 -14583 FUK fucokinase 642436 1 1 1 3 1 0 0 0 0 0 0.99 1.00 -14584 MYO1C myosin IC 676928 1 1 1 0 0 0 1 0 0 0 0.99 1.00 -14585 SUSD2 sushi domain containing 2 476672 1 1 1 1 1 0 0 0 0 0 0.99 1.00 -14586 COL6A2 collagen, type VI, alpha 2 540568 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14587 NEURL4 1026452 5 4 5 1 3 2 0 0 0 0 0.99 1.00 -14588 SEZ6 seizure related 6 homolog (mouse) 632496 1 1 1 2 0 1 0 0 0 0 0.99 1.00 -14589 RIN2 Ras and Rab interactor 2 597204 1 1 1 3 1 0 0 0 0 0 0.99 1.00 -14590 SNED1 sushi, nidogen and EGF-like domains 1 735240 3 3 3 3 1 2 0 0 0 0 0.99 1.00 -14591 ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 554344 1 1 1 0 0 1 0 0 0 0 0.99 1.00 -14592 PLEKHM1 pleckstrin homology domain containing, family M (with RUN domain) member 1 714648 1 1 1 0 0 0 1 0 0 0 0.99 1.00 -14593 KIAA1549 1257120 10 5 10 6 6 3 1 0 0 0 0.99 1.00 -14594 SHANK2 SH3 and multiple ankyrin repeat domains 2 779048 2 2 2 2 1 0 1 0 0 0 0.99 1.00 -14595 SLC27A3 solute carrier family 27 (fatty acid transporter), member 3 448560 1 1 1 1 0 1 0 0 0 0 0.99 1.00 -14596 CORO7 coronin 7 561964 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14597 DIAPH1 diaphanous homolog 1 (Drosophila) 832560 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -14598 LTBP4 latent transforming growth factor beta binding protein 4 925208 3 3 3 0 0 1 2 0 0 0 0.99 1.00 -14599 INCENP inner centromere protein antigens 135/155kDa 567400 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14600 PAN2 PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae) 830368 1 1 1 3 0 1 0 0 0 0 1.00 1.00 -14601 TECPR2 924532 3 3 3 4 2 0 1 0 0 0 1.00 1.00 -14602 ARHGAP4 Rho GTPase activating protein 4 501568 1 1 1 0 0 1 0 0 0 0 1.00 1.00 -14603 MYO9B myosin IXB 1282144 3 3 3 0 0 1 1 0 1 0 1.00 1.00 -14604 SLC12A4 solute carrier family 12 (potassium/chloride transporters), member 4 726324 1 1 1 2 0 0 1 0 0 0 1.00 1.00 -14605 ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17 1076740 3 3 3 4 1 1 1 0 0 0 1.00 1.00 -14606 DPP9 dipeptidyl-peptidase 9 542068 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14607 PLEKHM2 pleckstrin homology domain containing, family M (with RUN domain) member 2 565068 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14608 SLC45A1 solute carrier family 45, member 1 458348 1 1 1 2 0 1 0 0 0 0 1.00 1.00 -14609 NLRC3 NLR family, CARD domain containing 3 574664 1 1 1 0 0 1 0 0 0 0 1.00 1.00 -14610 CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 685656 1 1 1 3 0 1 0 0 0 0 1.00 1.00 -14611 RNF160 1216544 1 1 1 0 0 0 1 0 0 0 1.00 1.00 -14612 DOT1L DOT1-like, histone H3 methyltransferase (S. cerevisiae) 832300 3 2 3 0 2 0 0 0 1 0 1.00 1.00 -14613 RADIL 497000 1 1 1 2 0 0 1 0 0 0 1.00 1.00 -14614 NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 468048 2 2 2 0 1 1 0 0 0 0 1.00 1.00 -14615 C12orf63 chromosome 12 open reading frame 63 828352 4 1 4 1 1 1 2 0 0 0 1.00 1.00 -14616 PPP1R13L protein phosphatase 1, regulatory (inhibitor) subunit 13 like 421228 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14617 BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) 390672 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14618 FLNA filamin A, alpha (actin binding protein 280) 1612252 3 3 3 1 1 0 0 0 2 0 1.00 1.00 -14619 TOPBP1 topoisomerase (DNA) II binding protein 1 1043568 2 2 2 1 1 1 0 0 0 0 1.00 1.00 -14620 MEGF6 multiple EGF-like-domains 6 647976 2 2 2 0 1 1 0 0 0 0 1.00 1.00 -14621 SBF1 SET binding factor 1 1096032 3 3 3 0 2 0 0 0 1 0 1.00 1.00 -14622 ANO8 538452 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14623 ESYT1 772576 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14624 SPEG SPEG complex locus 1552216 6 6 5 3 4 1 1 0 0 0 1.00 1.00 -14625 FAM193A 838180 1 1 1 1 0 1 0 0 0 0 1.00 1.00 -14626 MICAL3 microtubule associated monoxygenase, calponin and LIM domain containing 3 1256812 3 3 3 3 1 2 0 0 0 0 1.00 1.00 -14627 QRICH2 glutamine rich 2 1132104 2 2 2 4 1 0 1 0 0 0 1.00 1.00 -14628 KIAA1161 KIAA1161 424664 1 1 1 2 1 0 0 0 0 0 1.00 1.00 -14629 ARHGAP39 527388 1 1 1 0 0 0 1 0 0 0 1.00 1.00 -14630 PLEKHG3 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 671976 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14631 CARD14 caspase recruitment domain family, member 14 624904 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14632 TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 1311664 5 4 5 6 1 4 0 0 0 0 1.00 1.00 -14633 LLGL1 lethal giant larvae homolog 1 (Drosophila) 660272 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14634 EHMT1 euchromatic histone-lysine N-methyltransferase 1 864956 2 2 2 2 1 0 1 0 0 0 1.00 1.00 -14635 CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila) 1839544 6 6 6 2 4 0 0 0 2 0 1.00 1.00 -14636 KDM6A 934388 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14637 TNK2 tyrosine kinase, non-receptor, 2 620856 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14638 PLEKHG2 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 885744 2 2 2 0 1 1 0 0 0 0 1.00 1.00 -14639 KIAA1614 KIAA1614 723352 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14640 XAB2 XPA binding protein 2 559248 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14641 TECPR1 622832 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14642 ATP13A1 ATPase type 13A1 737464 2 1 2 2 1 1 0 0 0 0 1.00 1.00 -14643 TSC2 tuberous sclerosis 2 1020864 2 2 2 2 2 0 0 0 0 0 1.00 1.00 -14644 CSPG4 chondroitin sulfate proteoglycan 4 1081400 2 2 2 1 1 0 0 0 1 0 1.00 1.00 -14645 AP3D1 adaptor-related protein complex 3, delta 1 subunit 806664 1 1 1 3 0 1 0 0 0 0 1.00 1.00 -14646 KIAA0182 KIAA0182 648480 1 1 1 3 1 0 0 0 0 0 1.00 1.00 -14647 TJP3 tight junction protein 3 (zona occludens 3) 573580 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14648 TYK2 tyrosine kinase 2 738056 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14649 MYO7B myosin VIIB 1299200 3 3 3 2 2 0 0 0 1 0 1.00 1.00 -14650 CCDC88B coiled-coil domain containing 88B 699444 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14651 SHROOM2 shroom family member 2 921664 2 2 2 7 2 0 0 0 0 0 1.00 1.00 -14652 ITGB4 integrin, beta 4 1165792 3 3 3 0 2 0 0 1 0 0 1.00 1.00 -14653 ADCY6 adenylate cyclase 6 777876 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14654 PFAS phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) 918036 1 1 1 1 0 1 0 0 0 0 1.00 1.00 -14655 DOCK6 dedicator of cytokinesis 6 1316812 6 4 6 2 4 2 0 0 0 0 1.00 1.00 -14656 NFRKB nuclear factor related to kappaB binding protein 912800 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14657 PER1 period homolog 1 (Drosophila) 843988 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14658 MUC5B mucin 5B, oligomeric mucus/gel-forming 3053544 10 9 10 10 1 4 2 0 3 0 1.00 1.00 -14659 RAB11FIP1 RAB11 family interacting protein 1 (class I) 814968 4 1 4 2 2 2 0 0 0 0 1.00 1.00 -14660 MST1R macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 919700 1 1 1 2 1 0 0 0 0 0 1.00 1.00 -14661 APC2 adenomatosis polyposis coli 2 631548 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14662 PLXNB2 plexin B2 956700 2 2 2 1 1 0 0 0 1 0 1.00 1.00 -14663 POLRMT polymerase (RNA) mitochondrial (DNA directed) 588196 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14664 C1orf175 chromosome 1 open reading frame 175 909440 2 1 2 1 0 2 0 0 0 0 1.00 1.00 -14665 NCKAP5L 795280 1 1 1 2 0 1 0 0 0 0 1.00 1.00 -14666 CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit 861420 2 2 2 0 1 1 0 0 0 0 1.00 1.00 -14667 PHRF1 821300 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14668 PLXNA1 plexin A1 1106060 2 2 2 2 1 0 0 0 1 0 1.00 1.00 -14669 NPHP4 nephronophthisis 4 956764 3 2 3 4 0 3 0 0 0 0 1.00 1.00 -14670 SLC38A10 solute carrier family 38, member 10 648428 1 1 1 1 0 1 0 0 0 0 1.00 1.00 -14671 MAP1A microtubule-associated protein 1A 1876812 7 4 7 4 1 5 1 0 0 0 1.00 1.00 -14672 ATP8B3 ATPase, class I, type 8B, member 3 786552 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14673 PPFIA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 772680 1 1 1 5 1 0 0 0 0 0 1.00 1.00 -14674 SSPO SCO-spondin homolog (Bos taurus) 2311368 6 6 6 1 1 3 1 0 1 0 1.00 1.00 -14675 ZNF646 zinc finger protein 646 1162672 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14676 HSPG2 heparan sulfate proteoglycan 2 2805720 9 8 9 4 5 3 0 0 1 0 1.00 1.00 -14677 NISCH nischarin 957796 1 1 1 4 1 0 0 0 0 0 1.00 1.00 -14678 NCOR2 nuclear receptor co-repressor 2 1389564 2 2 2 6 1 0 0 0 1 0 1.00 1.00 -14679 TNRC18 trinucleotide repeat containing 18 1109696 2 2 2 3 1 1 0 0 0 0 1.00 1.00 -14680 MYO5B myosin VB 1256136 2 1 2 4 0 2 0 0 0 0 1.00 1.00 -14681 AGRN agrin 847536 1 1 1 1 1 0 0 0 0 0 1.00 1.00 -14682 SPTBN5 spectrin, beta, non-erythrocytic 5 1737348 5 3 5 1 3 2 0 0 0 0 1.00 1.00 -14683 TUBGCP6 tubulin, gamma complex associated protein 6 1095448 1 1 1 4 0 1 0 0 0 0 1.00 1.00 -14684 FASN fatty acid synthase 1039472 1 1 1 0 1 0 0 0 0 0 1.00 1.00 -14685 PLEC 2169308 5 5 5 1 2 1 1 0 1 0 1.00 1.00 -14686 A1BG alpha-1-B glycoprotein 247152 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14687 AAMP angio-associated, migratory cell protein 291024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14688 AANAT arylalkylamine N-acetyltransferase 109704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14689 AATK apoptosis-associated tyrosine kinase 321788 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14690 ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 1129872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14691 ABCE1 ATP-binding cassette, sub-family E (OABP), member 1 418432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14692 ABHD1 abhydrolase domain containing 1 280896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14693 ABHD11 abhydrolase domain containing 11 210448 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14694 ABHD14A abhydrolase domain containing 14A 154172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14695 ABHD8 abhydrolase domain containing 8 241724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14696 ACADS acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain 262948 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14697 ACAP3 258244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14698 ACBD4 acyl-Coenzyme A binding domain containing 4 215152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14699 ACBD7 acyl-Coenzyme A binding domain containing 7 62048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14700 ACER3 173112 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14701 ACP6 acid phosphatase 6, lysophosphatidic 261016 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14702 ACPT acid phosphatase, testicular 249284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14703 ACSF2 acyl-CoA synthetase family member 2 408660 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14704 ACSF3 acyl-CoA synthetase family member 3 379428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14705 ACTC1 actin, alpha, cardiac muscle 1 251748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14706 ACTG1 actin, gamma 1 197428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14707 ACY3 aspartoacylase (aminocyclase) 3 181664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14708 ACYP2 acylphosphatase 2, muscle type 70784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14709 ADAL adenosine deaminase-like 187264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14710 ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 818332 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14711 ADAP1 202332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14712 ADAT3 adenosine deaminase, tRNA-specific 3, TAD3 homolog (S. cerevisiae) 62720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14713 ADCK5 aarF domain containing kinase 5 248920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14714 ADIG adipogenin 56224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14715 ADM2 adrenomedullin 2 38780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14716 ADO 2-aminoethanethiol (cysteamine) dioxygenase 56652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14717 ADPGK ADP-dependent glucokinase 287168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14718 ADPRH ADP-ribosylarginine hydrolase 243264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14719 ADPRHL1 ADP-ribosylhydrolase like 1 237188 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14720 ADRA2C adrenergic, alpha-2C-, receptor 132664 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14721 ADRB2 adrenergic, beta-2-, receptor, surface 279104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14722 ADRM1 adhesion regulating molecule 1 221788 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14723 ADSSL1 adenylosuccinate synthase like 1 306504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14724 AEBP2 AE binding protein 2 198292 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14725 AEN 217316 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14726 AES amino-terminal enhancer of split 116420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14727 AGAP4 113244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14728 AGER advanced glycosylation end product-specific receptor 193088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14729 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) 152568 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14730 AGR2 anterior gradient homolog 2 (Xenopus laevis) 124544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14731 AGR3 anterior gradient homolog 3 (Xenopus laevis) 118496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14732 AGRP agouti related protein homolog (mouse) 92064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14733 AGTRAP angiotensin II receptor-associated protein 134624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14734 AGXT alanine-glyoxylate aminotransferase 229552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14735 AHSA2 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) 96320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14736 AHSP 71008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14737 AIDA 215264 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14738 AIF1 allograft inflammatory factor 1 84336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14739 AIF1L 84224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14740 AIM1L absent in melanoma 1-like 397120 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14741 AIMP1 217952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14742 AK1 adenylate kinase 1 136416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14743 AK3L1 adenylate kinase 3-like 1 138852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14744 AKAP1 A kinase (PRKA) anchor protein 1 615944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14745 AKAP2 A kinase (PRKA) anchor protein 2 605808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14746 AKIRIN1 84000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14747 AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase) 226240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14748 AKR1B10 aldo-keto reductase family 1, member B10 (aldose reductase) 218856 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -14749 AKR1C1 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase) 206304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14750 AKR7A2 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) 200424 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14751 AKR7A3 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) 210000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14752 ALKBH1 alkB, alkylation repair homolog 1 (E. coli) 261240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14753 ALKBH3 alkB, alkylation repair homolog 3 (E. coli) 200928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14754 ALKBH4 alkB, alkylation repair homolog 4 (E. coli) 147924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14755 ALOX15 arachidonate 15-lipoxygenase 410788 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14756 ALX3 aristaless-like homeobox 3 178220 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14757 AMAC1L2 acyl-malonyl condensing enzyme 1-like 2 228704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14758 AMDHD2 amidohydrolase domain containing 2 328932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14759 AMELY amelogenin, Y-linked 81340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14760 AMH anti-Mullerian hormone 127400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14761 AMIGO3 adhesion molecule with Ig-like domain 3 269108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14762 AMN amnionless homolog (mouse) 104776 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14763 AMOTL2 angiomotin like 2 505932 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14764 AMT aminomethyltransferase 285656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14765 ANAPC11 APC11 anaphase promoting complex subunit 11 homolog (yeast) 97360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14766 ANAPC13 anaphase promoting complex subunit 13 52192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14767 ANAPC16 77280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14768 ANGPTL4 angiopoietin-like 4 216300 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14769 ANGPTL6 angiopoietin-like 6 212268 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14770 ANKHD1 ankyrin repeat and KH domain containing 1 1724952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14771 ANKRD20A1 ankyrin repeat domain 20 family, member A1 280692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14772 ANKRD22 ankyrin repeat domain 22 134400 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14773 ANKRD23 ankyrin repeat domain 23 183868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14774 ANKRD37 ankyrin repeat domain 37 111328 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14775 ANKRD54 ankyrin repeat domain 54 135072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14776 ANKRD57 ankyrin repeat domain 57 156576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14777 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 282688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14778 ANO9 395124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14779 ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B 150920 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14780 ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 180104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14781 ANXA8L2 annexin A8-like 2 75580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14782 ANXA9 annexin A9 243264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14783 AP1S3 adaptor-related protein complex 1, sigma 3 subunit 107072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14784 AP2S1 adaptor-related protein complex 2, sigma 1 subunit 99988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14785 AP4S1 adaptor-related protein complex 4, sigma 1 subunit 112000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14786 APBA3 amyloid beta (A4) precursor protein-binding, family A, member 3 (X11-like 2) 227844 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14787 APH1A anterior pharynx defective 1 homolog A (C. elegans) 187352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14788 APIP APAF1 interacting protein 169568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14789 APITD1 apoptosis-inducing, TAF9-like domain 1 136076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14790 APLN apelin, AGTRL1 ligand 16768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14791 APOA4 apolipoprotein A-IV 90112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14792 APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B 264544 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14793 APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H 124544 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14794 APOC3 apolipoprotein C-III 27016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14795 APOC4 apolipoprotein C-IV 88704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14796 APOF apolipoprotein F 221536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14797 APOL4 apolipoprotein L, 4 248164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14798 APOL6 apolipoprotein L, 6 232960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14799 APOO apolipoprotein O 139128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14800 APRT adenine phosphoribosyltransferase 72268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14801 APTX aprataxin 249088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14802 AREG amphiregulin (schwannoma-derived growth factor) 200128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14803 ARF1 ADP-ribosylation factor 1 125888 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14804 ARF3 ADP-ribosylation factor 3 125888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14805 ARF5 ADP-ribosylation factor 5 119224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14806 ARFRP1 ADP-ribosylation factor related protein 1 105616 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14807 ARHGAP1 Rho GTPase activating protein 1 292832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14808 ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha 126700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14809 ARHGEF19 Rho guanine nucleotide exchange factor (GEF) 19 479616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14810 ARHGEF35 174516 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14811 ARL10 ADP-ribosylation factor-like 10 126336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14812 ARL14 ADP-ribosylation factor-like 14 130592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14813 ARL16 ADP-ribosylation factor-like 16 117460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14814 ARL4A ADP-ribosylation factor-like 4A 134288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14815 ARL4C ADP-ribosylation factor-like 4C 130592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14816 ARL5B ADP-ribosylation factor-like 5B 126336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14817 ARL6 ADP-ribosylation factor-like 6 131936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14818 ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 142464 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14819 ARL6IP4 ADP-ribosylation-like factor 6 interacting protein 4 133060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14820 ARL9 ADP-ribosylation factor-like 9 86016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14821 ARMC6 armadillo repeat containing 6 326396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14822 ARMC7 armadillo repeat containing 7 127764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14823 ARMCX6 armadillo repeat containing, X-linked 6 130088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14824 ARMS2 age-related maculopathy susceptibility 2 67424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14825 ARPC3 actin related protein 2/3 complex, subunit 3, 21kDa 126560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14826 ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa 117376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14827 ARPP19 76188 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14828 ARR3 arrestin 3, retinal (X-arrestin) 262688 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14829 ARRB2 arrestin, beta 2 278152 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14830 ARTN artemin 62860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14831 ARVCF armadillo repeat gene deletes in velocardiofacial syndrome 441520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14832 ASB10 ankyrin repeat and SOCS box-containing 10 222488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14833 ASB11 ankyrin repeat and SOCS box-containing 11 251328 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14834 ASB13 ankyrin repeat and SOCS box-containing 13 151376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14835 ASCC1 activating signal cointegrator 1 complex subunit 1 248640 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14836 ASIP agouti signaling protein, nonagouti homolog (mouse) 68852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14837 ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) 240800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14838 ASPN asporin 262304 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14839 ASRGL1 asparaginase like 1 213024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14840 ATF5 activating transcription factor 5 172928 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14841 ATG12 ATG12 autophagy related 12 homolog (S. cerevisiae) 98336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14842 ATG4B ATG4 autophagy related 4 homolog B (S. cerevisiae) 109824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14843 ATOH7 atonal homolog 7 (Drosophila) 68628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14844 ATOX1 ATX1 antioxidant protein 1 homolog (yeast) 48216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14845 ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide 194348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14846 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 35920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14847 ATP5G1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) 95648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14848 ATP5G2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) 137936 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14849 ATP5H ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 113344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14850 ATP5I ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E 34972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14851 ATP5J ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 79352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14852 ATP6V0E1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 57792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14853 ATP6V0E2 ATPase, H+ transporting V0 subunit e2 100692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14854 ATP6V1D ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D 174720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14855 ATP6V1F ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F 82432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14856 ATP6V1G1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 56680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14857 ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 201880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14858 ATPIF1 ATPase inhibitory factor 1 84336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14859 AURKAIP1 aurora kinase A interacting protein 1 43472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14860 AVP arginine vasopressin (neurophysin II, antidiuretic hormone, diabetes insipidus, neurohypophyseal) 45836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14861 AZU1 azurocidin 1 (cationic antimicrobial protein 37) 120120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14862 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 321440 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14863 B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 63140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14864 B3GAT2 beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) 173768 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -14865 B3GNT6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase) 151708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14866 B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 644648 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14867 B4GALT4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 237216 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14868 B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) 210420 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14869 BAGE B melanoma antigen 19292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14870 BAGE4 B melanoma antigen family, member 4 19432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14871 BAGE5 B melanoma antigen family, member 5 19292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14872 BARX1 BARX homeobox 1 75428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14873 BASP1 brain abundant, membrane attached signal protein 1 104068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14874 BCAP31 B-cell receptor-associated protein 31 174496 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14875 BCAR1 breast cancer anti-estrogen resistance 1 471408 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14876 BCL2L10 BCL2-like 10 (apoptosis facilitator) 76160 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14877 BCL2L2 BCL2-like 2 132160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14878 BDH2 3-hydroxybutyrate dehydrogenase, type 2 173376 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14879 BDKRB1 bradykinin receptor B1 238784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14880 BET1L blocked early in transport 1 homolog (S. cerevisiae)-like 107604 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14881 BEX2 brain expressed X-linked 2 88704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14882 BEX4 BEX family member 4 80192 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14883 BHLHB9 basic helix-loop-helix domain containing, class B, 9 369152 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14884 BHLHE22 69244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14885 BHLHE40 275536 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14886 BIRC5 baculoviral IAP repeat-containing 5 (survivin) 138016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14887 BIRC7 baculoviral IAP repeat-containing 7 (livin) 164752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14888 BIVM basic, immunoglobulin-like variable motif containing 348992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14889 BLOC1S3 biogenesis of lysosome-related organelles complex-1, subunit 3 36680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14890 BMP8B bone morphogenetic protein 8b (osteogenic protein 2) 145628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14891 BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 125216 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14892 BOLL bol, boule-like (Drosophila) 208768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14893 BPGM 2,3-bisphosphoglycerate mutase 176512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14894 BRCC3 BRCA1/BRCA2-containing complex, subunit 3 200848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14895 BRI3 brain protein I3 54656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14896 BRIX1 240456 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14897 BRMS1L breast cancer metastasis-suppressor 1-like 224784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14898 BSDC1 BSD domain containing 1 292696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14899 BSG basigin (Ok blood group) 169400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14900 BSPRY B-box and SPRY domain containing 227920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14901 BST1 bone marrow stromal cell antigen 1 179424 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14902 BTBD17 133756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14903 BTBD2 BTB (POZ) domain containing 2 283236 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14904 BTBD6 BTB (POZ) domain containing 6 232848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14905 BTF3L4 basic transcription factor 3-like 4 111328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14906 BTG2 BTG family, member 2 95656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14907 BTNL9 butyrophilin-like 9 282128 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14908 BUD31 BUD31 homolog (S. cerevisiae) 101024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14909 BYSL bystin-like 298676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14910 C10orf10 chromosome 10 open reading frame 10 103208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14911 C10orf107 chromosome 10 open reading frame 107 145824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14912 C10orf111 chromosome 10 open reading frame 111 105728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14913 C10orf116 chromosome 10 open reading frame 116 43052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14914 C10orf125 chromosome 10 open reading frame 125 43556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14915 C10orf129 chromosome 10 open reading frame 129 134624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14916 C10orf53 chromosome 10 open reading frame 53 110584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14917 C10orf54 chromosome 10 open reading frame 54 211064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14918 C10orf57 chromosome 10 open reading frame 57 77936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14919 C10orf62 chromosome 10 open reading frame 62 144872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14920 C10orf67 chromosome 10 open reading frame 67 90984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14921 C10orf91 chromosome 10 open reading frame 91 89340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14922 C10orf99 chromosome 10 open reading frame 99 57792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14923 C11orf1 chromosome 11 open reading frame 1 95400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14924 C11orf20 57992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14925 C11orf31 chromosome 11 open reading frame 31 67936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14926 C11orf35 chromosome 11 open reading frame 35 221312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14927 C11orf42 chromosome 11 open reading frame 42 227136 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14928 C11orf45 chromosome 11 open reading frame 45 100800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14929 C11orf46 chromosome 11 open reading frame 46 178080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14930 C11orf48 chromosome 11 open reading frame 48 182784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14931 C11orf51 chromosome 11 open reading frame 51 85568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14932 C11orf52 chromosome 11 open reading frame 52 86912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14933 C11orf58 chromosome 11 open reading frame 58 128128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14934 C11orf59 chromosome 11 open reading frame 59 97824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14935 C11orf67 chromosome 11 open reading frame 67 85344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14936 C11orf68 chromosome 11 open reading frame 68 160300 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14937 C11orf70 chromosome 11 open reading frame 70 159936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14938 C11orf75 chromosome 11 open reading frame 75 41216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14939 C11orf83 62512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14940 C11orf84 256256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14941 C11orf88 119616 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -14942 C11orf94 54852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14943 C12orf10 chromosome 12 open reading frame 10 259616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14944 C12orf23 chromosome 12 open reading frame 23 80416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14945 C12orf34 chromosome 12 open reading frame 34 207816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14946 C12orf36 chromosome 12 open reading frame 36 95200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14947 C12orf43 chromosome 12 open reading frame 43 179012 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14948 C12orf44 chromosome 12 open reading frame 44 148960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14949 C12orf49 chromosome 12 open reading frame 49 138124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14950 C12orf5 chromosome 12 open reading frame 5 187488 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14951 C12orf60 chromosome 12 open reading frame 60 166208 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14952 C12orf61 chromosome 12 open reading frame 61 39116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14953 C12orf62 chromosome 12 open reading frame 62 39872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14954 C12orf64 chromosome 12 open reading frame 64 1523320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14955 C12orf65 chromosome 12 open reading frame 65 114016 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14956 C12orf72 179424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14957 C12orf74 132384 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14958 C12orf77 100128 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14959 C13orf15 chromosome 13 open reading frame 15 67424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14960 C13orf30 chromosome 13 open reading frame 30 96768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14961 C13orf35 chromosome 13 open reading frame 35 83776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14962 C13orf37 51744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14963 C14orf109 chromosome 14 open reading frame 109 114688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14964 C14orf115 chromosome 14 open reading frame 115 469532 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14965 C14orf119 chromosome 14 open reading frame 119 95648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14966 C14orf138 chromosome 14 open reading frame 138 156784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14967 C14orf142 chromosome 14 open reading frame 142 69664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14968 C14orf147 chromosome 14 open reading frame 147 40432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14969 C14orf149 chromosome 14 open reading frame 149 198492 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14970 C14orf156 chromosome 14 open reading frame 156 77504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14971 C14orf174 chromosome 14 open reading frame 174 456288 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14972 C14orf180 chromosome 14 open reading frame 180 49008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14973 C14orf181 chromosome 14 open reading frame 181 76328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14974 C14orf184 53888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14975 C14orf2 chromosome 14 open reading frame 2 42336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14976 C14orf4 chromosome 14 open reading frame 4 290836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14977 C14orf68 chromosome 14 open reading frame 68 185892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14978 C14orf73 chromosome 14 open reading frame 73 269184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14979 C14orf79 chromosome 14 open reading frame 79 217840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14980 C15orf17 chromosome 15 open reading frame 17 111328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14981 C15orf38 chromosome 15 open reading frame 38 136416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14982 C15orf44 chromosome 15 open reading frame 44 358624 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14983 C15orf54 chromosome 15 open reading frame 54 124544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14984 C15orf63 90944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14985 C16orf11 chromosome 16 open reading frame 11 133196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14986 C16orf42 chromosome 16 open reading frame 42 119000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14987 C16orf5 chromosome 16 open reading frame 5 111628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14988 C16orf53 chromosome 16 open reading frame 53 120888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14989 C16orf55 chromosome 16 open reading frame 55 84476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14990 C16orf59 chromosome 16 open reading frame 59 194264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14991 C16orf61 chromosome 16 open reading frame 61 56448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14992 C16orf70 chromosome 16 open reading frame 70 289344 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14993 C16orf72 chromosome 16 open reading frame 72 137536 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14994 C16orf74 chromosome 16 open reading frame 74 18960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14995 C16orf75 chromosome 16 open reading frame 75 34272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14996 C16orf79 chromosome 16 open reading frame 79 152348 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14997 C16orf80 chromosome 16 open reading frame 80 135744 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14998 C16orf82 chromosome 16 open reading frame 82 95264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14999 C16orf86 chromosome 16 open reading frame 86 141876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15000 C16orf91 233672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15001 C16orf92 95200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15002 C17orf49 chromosome 17 open reading frame 49 108612 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15003 C17orf56 chromosome 17 open reading frame 56 292372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15004 C17orf58 chromosome 17 open reading frame 58 95648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15005 C17orf61 chromosome 17 open reading frame 61 79200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15006 C17orf64 chromosome 17 open reading frame 64 88256 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15007 C17orf65 chromosome 17 open reading frame 65 45668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15008 C17orf67 chromosome 17 open reading frame 67 79968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15009 C17orf68 chromosome 17 open reading frame 68 825232 0 0 0 6 0 0 0 0 0 0 1.00 1.00 -15010 C17orf70 chromosome 17 open reading frame 70 328608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15011 C17orf76 chromosome 17 open reading frame 76 91980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15012 C17orf77 chromosome 17 open reading frame 77 164864 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15013 C17orf81 chromosome 17 open reading frame 81 243712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15014 C17orf82 chromosome 17 open reading frame 82 96516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15015 C17orf90 chromosome 17 open reading frame 90 83692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15016 C18orf22 chromosome 18 open reading frame 22 223832 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15017 C18orf56 chromosome 18 open reading frame 56 38920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15018 C19orf12 chromosome 19 open reading frame 12 99036 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15019 C19orf22 chromosome 19 open reading frame 22 154636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15020 C19orf25 chromosome 19 open reading frame 25 35140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15021 C19orf26 chromosome 19 open reading frame 26 214312 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15022 C19orf33 chromosome 19 open reading frame 33 59760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15023 C19orf35 chromosome 19 open reading frame 35 163908 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15024 C19orf36 chromosome 19 open reading frame 36 157556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15025 C19orf41 chromosome 19 open reading frame 41 147976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15026 C19orf42 chromosome 19 open reading frame 42 55468 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15027 C19orf45 chromosome 19 open reading frame 45 262192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15028 C19orf47 chromosome 19 open reading frame 47 243572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15029 C19orf48 chromosome 19 open reading frame 48 80108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15030 C19orf50 chromosome 19 open reading frame 50 122528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15031 C19orf51 chromosome 19 open reading frame 51 302428 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15032 C19orf52 chromosome 19 open reading frame 52 57680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15033 C19orf54 chromosome 19 open reading frame 54 139880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15034 C19orf56 chromosome 19 open reading frame 56 75488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15035 C19orf57 chromosome 19 open reading frame 57 406984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15036 C19orf59 chromosome 19 open reading frame 59 132608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15037 C19orf6 chromosome 19 open reading frame 6 197180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15038 C19orf60 chromosome 19 open reading frame 60 51044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15039 C19orf70 42644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15040 C1D 99008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15041 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 247296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15042 C1QA complement component 1, q subcomponent, A chain 163072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15043 C1QBP complement component 1, q subcomponent binding protein 142688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15044 C1QL1 complement component 1, q subcomponent-like 1 126756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15045 C1QL3 complement component 1, q subcomponent-like 3 112928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15046 C1QTNF2 C1q and tumor necrosis factor related protein 2 206624 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15047 C1QTNF4 C1q and tumor necrosis factor related protein 4 96796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15048 C1QTNF5 C1q and tumor necrosis factor related protein 5 76244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15049 C1QTNF8 C1q and tumor necrosis factor related protein 8 92512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15050 C1QTNF9 C1q and tumor necrosis factor related protein 9 204288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15051 C1orf105 chromosome 1 open reading frame 105 129920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15052 C1orf109 chromosome 1 open reading frame 109 131600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15053 C1orf110 chromosome 1 open reading frame 110 206304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15054 C1orf122 chromosome 1 open reading frame 122 21728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15055 C1orf123 chromosome 1 open reading frame 123 114520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15056 C1orf151 chromosome 1 open reading frame 151 56672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15057 C1orf158 chromosome 1 open reading frame 158 134624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15058 C1orf159 chromosome 1 open reading frame 159 53012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15059 C1orf163 chromosome 1 open reading frame 163 158172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15060 C1orf182 chromosome 1 open reading frame 182 87360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15061 C1orf21 chromosome 1 open reading frame 21 86464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15062 C1orf210 chromosome 1 open reading frame 210 78400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15063 C1orf213 chromosome 1 open reading frame 213 106092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15064 C1orf216 chromosome 1 open reading frame 216 155456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15065 C1orf31 chromosome 1 open reading frame 31 87360 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15066 C1orf53 chromosome 1 open reading frame 53 79772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15067 C1orf54 chromosome 1 open reading frame 54 93184 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15068 C1orf56 chromosome 1 open reading frame 56 219352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15069 C1orf63 chromosome 1 open reading frame 63 182168 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15070 C1orf64 chromosome 1 open reading frame 64 115612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15071 C1orf83 chromosome 1 open reading frame 83 144032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15072 C1orf84 chromosome 1 open reading frame 84 108388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15073 C1orf86 chromosome 1 open reading frame 86 75320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15074 C1orf91 chromosome 1 open reading frame 91 98140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15075 C1orf95 chromosome 1 open reading frame 95 74544 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15076 C20orf108 chromosome 20 open reading frame 108 89824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15077 C20orf11 chromosome 20 open reading frame 11 155120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15078 C20orf118 chromosome 20 open reading frame 118 150528 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15079 C20orf134 chromosome 20 open reading frame 134 98392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15080 C20orf135 chromosome 20 open reading frame 135 103800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15081 C20orf144 chromosome 20 open reading frame 144 35800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15082 C20orf166 chromosome 20 open reading frame 166 63196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15083 C20orf20 chromosome 20 open reading frame 20 106092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15084 C20orf24 chromosome 20 open reading frame 24 111928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15085 C20orf27 chromosome 20 open reading frame 27 138880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15086 C20orf29 chromosome 20 open reading frame 29 133672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15087 C20orf70 chromosome 20 open reading frame 70 174272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15088 C21orf2 chromosome 21 open reading frame 2 126504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15089 C21orf33 chromosome 21 open reading frame 33 172956 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15090 C21orf45 chromosome 21 open reading frame 45 127820 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15091 C21orf56 chromosome 21 open reading frame 56 83888 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15092 C21orf57 chromosome 21 open reading frame 57 96320 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15093 C21orf58 chromosome 21 open reading frame 58 136560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15094 C21orf59 chromosome 21 open reading frame 59 181272 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15095 C21orf7 chromosome 21 open reading frame 7 129696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15096 C22orf13 chromosome 22 open reading frame 13 159164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15097 C22orf15 chromosome 22 open reading frame 15 39368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15098 C22orf32 chromosome 22 open reading frame 32 69328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15099 C22orf36 chromosome 22 open reading frame 36 158004 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15100 C22orf39 chromosome 22 open reading frame 39 34160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15101 C2CD4A 69076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15102 C2orf47 chromosome 2 open reading frame 47 200032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15103 C2orf48 chromosome 2 open reading frame 48 103572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15104 C2orf54 chromosome 2 open reading frame 54 210324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15105 C2orf61 chromosome 2 open reading frame 61 124096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15106 C2orf64 chromosome 2 open reading frame 64 44436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15107 C2orf68 87612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15108 C2orf73 159664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15109 C2orf76 89824 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15110 C2orf83 86912 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15111 C3orf10 chromosome 3 open reading frame 10 53760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15112 C3orf17 chromosome 3 open reading frame 17 389760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15113 C3orf18 chromosome 3 open reading frame 18 107988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15114 C3orf21 chromosome 3 open reading frame 21 179032 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15115 C3orf37 chromosome 3 open reading frame 37 243936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15116 C3orf52 chromosome 3 open reading frame 52 109400 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15117 C3orf55 chromosome 3 open reading frame 55 77160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15118 C3orf57 chromosome 3 open reading frame 57 52640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15119 C3orf62 chromosome 3 open reading frame 62 181608 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15120 C3orf71 126364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15121 C4BPB complement component 4 binding protein, beta 175392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15122 C4orf23 chromosome 4 open reading frame 23 253064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15123 C4orf3 49056 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15124 C4orf32 chromosome 4 open reading frame 32 56000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15125 C4orf33 chromosome 4 open reading frame 33 138880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15126 C4orf34 chromosome 4 open reading frame 34 70784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15127 C4orf36 chromosome 4 open reading frame 36 81984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15128 C4orf44 83020 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15129 C4orf46 72280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15130 C4orf49 158312 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15131 C4orf50 192416 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15132 C4orf51 141792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15133 C5orf20 chromosome 5 open reading frame 20 165536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15134 C5orf24 chromosome 5 open reading frame 24 127568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15135 C5orf32 chromosome 5 open reading frame 32 67648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15136 C5orf33 chromosome 5 open reading frame 33 235504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15137 C5orf39 chromosome 5 open reading frame 39 129416 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15138 C5orf44 286688 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15139 C5orf46 61280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15140 C5orf55 72968 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15141 C6orf1 chromosome 6 open reading frame 1 101388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15142 C6orf108 chromosome 6 open reading frame 108 92288 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15143 C6orf120 chromosome 6 open reading frame 120 103012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15144 C6orf126 chromosome 6 open reading frame 126 49216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15145 C6orf130 chromosome 6 open reading frame 130 107296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15146 C6orf134 chromosome 6 open reading frame 134 168336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15147 C6orf145 chromosome 6 open reading frame 145 111804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15148 C6orf154 chromosome 6 open reading frame 154 174272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15149 C6orf182 chromosome 6 open reading frame 182 318752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15150 C6orf191 chromosome 6 open reading frame 191 91168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15151 C6orf195 chromosome 6 open reading frame 195 84896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15152 C6orf201 chromosome 6 open reading frame 201 98336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15153 C6orf223 chromosome 6 open reading frame 223 114348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15154 C6orf225 56224 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15155 C6orf226 60368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15156 C6orf57 chromosome 6 open reading frame 57 75664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15157 C6orf72 chromosome 6 open reading frame 72 203084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15158 C7orf28A chromosome 7 open reading frame 28A 273728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15159 C7orf36 chromosome 7 open reading frame 36 155232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15160 C7orf44 chromosome 7 open reading frame 44 103264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15161 C7orf45 chromosome 7 open reading frame 45 167328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15162 C7orf52 chromosome 7 open reading frame 52 198492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15163 C7orf55 chromosome 7 open reading frame 55 78400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15164 C7orf60 273952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15165 C7orf61 141792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15166 C7orf68 43904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15167 C7orf69 60256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15168 C8G complement component 8, gamma polypeptide 119092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15169 C8orf33 chromosome 8 open reading frame 33 159040 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15170 C8orf38 chromosome 8 open reading frame 38 187488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15171 C8orf44 chromosome 8 open reading frame 44 102900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15172 C8orf58 chromosome 8 open reading frame 58 172144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15173 C8orf59 chromosome 8 open reading frame 59 69216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15174 C8orf73 chromosome 8 open reading frame 73 258988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15175 C8orf76 chromosome 8 open reading frame 76 246176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15176 C9orf116 chromosome 9 open reading frame 116 82404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15177 C9orf123 chromosome 9 open reading frame 123 77728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15178 C9orf139 chromosome 9 open reading frame 139 90748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15179 C9orf140 chromosome 9 open reading frame 140 82628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15180 C9orf142 chromosome 9 open reading frame 142 85540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15181 C9orf153 chromosome 9 open reading frame 153 71232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15182 C9orf16 chromosome 9 open reading frame 16 40000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15183 C9orf163 chromosome 9 open reading frame 163 97356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15184 C9orf167 chromosome 9 open reading frame 167 79716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15185 C9orf170 83776 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15186 C9orf172 177044 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15187 C9orf173 157996 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15188 C9orf40 chromosome 9 open reading frame 40 65352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15189 C9orf46 chromosome 9 open reading frame 46 103040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15190 C9orf6 chromosome 9 open reading frame 6 127680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15191 C9orf66 chromosome 9 open reading frame 66 109732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15192 C9orf69 chromosome 9 open reading frame 69 40740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15193 C9orf71 chromosome 9 open reading frame 71 116704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15194 C9orf78 chromosome 9 open reading frame 78 202944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15195 C9orf89 chromosome 9 open reading frame 89 114096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15196 C9orf91 chromosome 9 open reading frame 91 237664 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15197 CA12 carbonic anhydrase XII 238628 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15198 CA5B carbonic anhydrase VB, mitochondrial 214936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15199 CA7 carbonic anhydrase VII 174496 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15200 CAB39 calcium binding protein 39 236992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15201 CABC1 chaperone, ABC1 activity of bc1 complex homolog (S. pombe) 404936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15202 CABLES2 Cdk5 and Abl enzyme substrate 2 248444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15203 CABP7 calcium binding protein 7 125440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15204 CALB1 calbindin 1, 28kDa 185920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15205 CALHM2 189028 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15206 CALM1 calmodulin 1 (phosphorylase kinase, delta) 105224 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15207 CALM2 calmodulin 2 (phosphorylase kinase, delta) 106176 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15208 CALM3 calmodulin 3 (phosphorylase kinase, delta) 104608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15209 CALML3 calmodulin-like 3 101612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15210 CALML6 calmodulin-like 6 121288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15211 CALY calcyon neuron-specific vesicular protein 62788 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15212 CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1 33460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15213 CAMK2N2 calcium/calmodulin-dependent protein kinase II inhibitor 2 35812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15214 CAMLG calcium modulating ligand 203168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15215 CAMP cathelicidin antimicrobial peptide 118496 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15216 CANT1 calcium activated nucleotidase 1 258276 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15217 CAPS calcyphosine 117908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15218 CARHSP1 calcium regulated heat stable protein 1, 24kDa 94920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15219 CARNS1 348500 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15220 CASKIN1 CASK interacting protein 1 523060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15221 CASKIN2 CASK interacting protein 2 592100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15222 CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 238412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15223 CBLC Cas-Br-M (murine) ecotropic retroviral transforming sequence c 283612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15224 CBLN2 cerebellin 2 precursor 115584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15225 CBR1 carbonyl reductase 1 168784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15226 CBR3 carbonyl reductase 3 160608 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15227 CBWD1 COBW domain containing 1 245084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15228 CBWD2 COBW domain containing 2 240688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15229 CBWD6 COBW domain containing 6 110740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15230 CBX1 chromobox homolog 1 (HP1 beta homolog Drosophila ) 128576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15231 CBX4 chromobox homolog 4 (Pc class homolog, Drosophila) 286524 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15232 CBX6 chromobox homolog 6 164192 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15233 CCDC107 coiled-coil domain containing 107 167264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15234 CCDC122 coiled-coil domain containing 122 188608 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15235 CCDC124 coiled-coil domain containing 124 85232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15236 CCDC153 87136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15237 CCDC43 coiled-coil domain containing 43 149100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15238 CCDC48 coiled-coil domain containing 48 114688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15239 CCDC56 coiled-coil domain containing 56 73696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15240 CCDC72 coiled-coil domain containing 72 32816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15241 CCDC78 coiled-coil domain containing 78 193200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15242 CCDC84 coiled-coil domain containing 84 209112 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15243 CCDC85A coiled-coil domain containing 85A 314440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15244 CCDC89 coiled-coil domain containing 89 252896 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15245 CCDC94 coiled-coil domain containing 94 199684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15246 CCL1 chemokine (C-C motif) ligand 1 67872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15247 CCL11 chemokine (C-C motif) ligand 11 68544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15248 CCL14 chemokine (C-C motif) ligand 14 65856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15249 CCL16 chemokine (C-C motif) ligand 16 84000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15250 CCL17 chemokine (C-C motif) ligand 17 66528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15251 CCL19 chemokine (C-C motif) ligand 19 70112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15252 CCL2 chemokine (C-C motif) ligand 2 69888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15253 CCL20 chemokine (C-C motif) ligand 20 68768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15254 CCL21 chemokine (C-C motif) ligand 21 94304 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15255 CCL24 chemokine (C-C motif) ligand 24 83328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15256 CCL25 chemokine (C-C motif) ligand 25 93544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15257 CCL26 chemokine (C-C motif) ligand 26 64080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15258 CCL28 chemokine (C-C motif) ligand 28 88704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15259 CCL3 chemokine (C-C motif) ligand 3 65184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15260 CCL4 chemokine (C-C motif) ligand 4 65184 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15261 CCL5 chemokine (C-C motif) ligand 5 64512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15262 CCND1 cyclin D1 195452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15263 CCNG2 cyclin G2 238112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15264 CCNI2 cyclin I family, member 2 163744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15265 CCNJ cyclin J 257376 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15266 CCNK cyclin K 285728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15267 CCNO cyclin O 145360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15268 CCR10 chemokine (C-C motif) receptor 10 125692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15269 CCR2 chemokine (C-C motif) receptor 2 169592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15270 CCRL2 chemokine (C-C motif) receptor-like 2 165208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15271 CCT7 chaperonin containing TCP1, subunit 7 (eta) 375312 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15272 CD164 CD164 molecule, sialomucin 117624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15273 CD276 CD276 molecule 363132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15274 CD302 CD302 molecule 146048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15275 CD3E CD3e molecule, epsilon (CD3-TCR complex) 146944 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15276 CD48 CD48 molecule 167552 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15277 CD59 CD59 molecule, complement regulatory protein 89376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15278 CD68 CD68 molecule 243528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15279 CD81 CD81 molecule 135800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15280 CD82 CD82 molecule 186592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15281 CD86 CD86 molecule 228032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15282 CD8A CD8a molecule 117852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15283 CDC26 cell division cycle 26 homolog (S. cerevisiae) 59584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15284 CDC34 cell division cycle 34 homolog (S. cerevisiae) 134620 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15285 CDC37L1 cell division cycle 37 homolog (S. cerevisiae)-like 1 233408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15286 CDC42EP2 CDC42 effector protein (Rho GTPase binding) 2 138824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15287 CDC42SE1 CDC42 small effector 1 56448 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15288 CDC42SE2 CDC42 small effector 2 59808 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15289 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) 132320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15290 CDK10 cyclin-dependent kinase 10 234840 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15291 CDK2AP1 CDK2-associated protein 1 68320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15292 CDK2AP2 CDK2-associated protein 2 52624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15293 CDK5 cyclin-dependent kinase 5 200540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15294 CDK5R2 cyclin-dependent kinase 5, regulatory subunit 2 (p39) 143276 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15295 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 103152 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15296 CDKN2AIPNL CDKN2A interacting protein N-terminal like 68656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15297 CDKN2B cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) 40104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15298 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 94556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15299 CDKN3 cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase) 148536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15300 CDRT4 CMT1A duplicated region transcript 4 103936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15301 CDT1 chromatin licensing and DNA replication factor 1 228508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15302 CDV3 CDV3 homolog (mouse) 133672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15303 CDX1 caudal type homeobox 1 80864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15304 CDX4 caudal type homeobox 4 184380 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15305 CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) 236320 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15306 CEBPB CCAAT/enhancer binding protein (C/EBP), beta 71232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15307 CEBPD CCAAT/enhancer binding protein (C/EBP), delta 58212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15308 CEBPG CCAAT/enhancer binding protein (C/EBP), gamma 102368 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15309 CECR6 cat eye syndrome chromosome region, candidate 6 127848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15310 CELA2A 188608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15311 CELA3B 185872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15312 CELF5 294756 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15313 CEMP1 cementum protein 1 147224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15314 CEND1 cell cycle exit and neuronal differentiation 1 90272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15315 CENPBD1 90228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15316 CENPH centromere protein H 158536 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15317 CENPQ centromere protein Q 187936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15318 CENPT centromere protein T 375732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15319 CENPW 62496 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15320 CES8 324152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15321 CETN2 centrin, EF-hand protein, 2 119784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15322 CETN3 centrin, EF-hand protein, 3 (CDC31 homolog, yeast) 117376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15323 CFD complement factor D (adipsin) 66700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15324 CFHR1 complement factor H-related 1 211316 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15325 CFHR3 complement factor H-related 3 227808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15326 CFL2 cofilin 2 (muscle) 115808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15327 CGB1 chorionic gonadotropin, beta polypeptide 1 74480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15328 CGB5 chorionic gonadotropin, beta polypeptide 5 55860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15329 CGB7 chorionic gonadotropin, beta polypeptide 7 86044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15330 CGB8 chorionic gonadotropin, beta polypeptide 8 60396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15331 CGREF1 cell growth regulator with EF-hand domain 1 212800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15332 CGRRF1 cell growth regulator with ring finger domain 1 229152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15333 CHCHD1 coiled-coil-helix-coiled-coil-helix domain containing 1 80472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15334 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 80416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15335 CHCHD8 coiled-coil-helix-coiled-coil-helix domain containing 8 60032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15336 CHKB choline kinase beta 223804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15337 CHMP1B chromatin modifying protein 1B 134708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15338 CHMP4A chromatin modifying protein 4A 184128 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15339 CHMP6 chromatin modifying protein 6 92576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15340 CHP 137984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15341 CHRAC1 chromatin accessibility complex 1 85672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15342 CHRNA10 cholinergic receptor, nicotinic, alpha 10 247044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15343 CHRNB4 cholinergic receptor, nicotinic, beta 4 331096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15344 CHST3 carbohydrate (chondroitin 6) sulfotransferase 3 163832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15345 CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 172900 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15346 CHST7 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 129608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15347 CHTF18 CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 334692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15348 CHTF8 84672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15349 CHURC1 churchill domain containing 1 80192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15350 CIAO1 cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae) 214900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15351 CIAPIN1 cytokine induced apoptosis inhibitor 1 217504 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15352 CIB1 calcium and integrin binding 1 (calmyrin) 114136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15353 CIDEA cell death-inducing DFFA-like effector a 168616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15354 CIDEB cell death-inducing DFFA-like effector b 152320 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15355 CIDEC cell death-inducing DFFA-like effector c 143600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15356 CISD1 CDGSH iron sulfur domain 1 75936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15357 CISD2 CDGSH iron sulfur domain 2 93316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15358 CISH cytokine inducible SH2-containing protein 160440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15359 CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 122432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15360 CKB creatine kinase, brain 175644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15361 CKLF chemokine-like factor 109312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15362 CKMT1A creatine kinase, mitochondrial 1A 116172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15363 CLCF1 cardiotrophin-like cytokine factor 1 140084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15364 CLDN1 claudin 1 146048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15365 CLDN14 claudin 14 129752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15366 CLDN20 claudin 20 143948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15367 CLDN22 claudin 22 149408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15368 CLDN23 claudin 23 72380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15369 CLDN3 claudin 3 110040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15370 CLDN4 claudin 4 142016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15371 CLDN5 claudin 5 (transmembrane protein deleted in velocardiofacial syndrome) 91968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15372 CLEC11A C-type lectin domain family 11, member A 142392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15373 CLEC17A 205632 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15374 CLEC18A 124040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15375 CLEC2L C-type lectin domain family 2, member L 87808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15376 CLEC3B C-type lectin domain family 3, member B 130548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15377 CLEC4G C-type lectin superfamily 4, member G 166460 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15378 CLIC1 chloride intracellular channel 1 141120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15379 CLIC3 chloride intracellular channel 3 85968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15380 CLK2 CDC-like kinase 2 346080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15381 CLLU1 chronic lymphocytic leukemia up-regulated 1 82880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15382 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 71232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15383 CLTB clathrin, light chain (Lcb) 143892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15384 CMA1 chymase 1, mast cell 171136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15385 CMBL carboxymethylenebutenolidase homolog (Pseudomonas) 169792 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15386 CMTM3 CKLF-like MARVEL transmembrane domain containing 3 93632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15387 CMTM6 CKLF-like MARVEL transmembrane domain containing 6 111412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15388 CMTM7 CKLF-like MARVEL transmembrane domain containing 7 86240 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15389 CMTM8 CKLF-like MARVEL transmembrane domain containing 8 106584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15390 CNBP CCHC-type zinc finger, nucleic acid binding protein 124544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15391 CNFN cornifelin 65268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15392 CNIH2 cornichon homolog 2 (Drosophila) 97640 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15393 CNIH4 cornichon homolog 4 (Drosophila) 98560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15394 CNN3 calponin 3, acidic 228032 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15395 CNO cappuccino homolog (mouse) 55692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15396 CNP 2',3'-cyclic nucleotide 3' phosphodiesterase 283752 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15397 CNPY3 canopy 3 homolog (zebrafish) 162896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15398 CNR2 cannabinoid receptor 2 (macrophage) 243068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15399 CNTD2 cyclin N-terminal domain containing 2 63700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15400 COIL coilin 389816 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15401 COL10A1 collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) 453880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15402 COL6A1 collagen, type VI, alpha 1 462708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15403 COL9A3 collagen, type IX, alpha 3 387716 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15404 COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 328704 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -15405 COMMD3 COMM domain containing 3 107544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15406 COMMD6 COMM domain containing 6 71008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15407 COMMD7 COMM domain containing 7 123424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15408 COMT catechol-O-methyltransferase 164968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15409 COMTD1 catechol-O-methyltransferase domain containing 1 49460 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15410 COPG2 coatomer protein complex, subunit gamma 2 266104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15411 COPZ1 coatomer protein complex, subunit zeta 1 127408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15412 COPZ2 coatomer protein complex, subunit zeta 2 116752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15413 COQ3 coenzyme Q3 homolog, methyltransferase (S. cerevisiae) 254912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15414 COQ4 coenzyme Q4 homolog (S. cerevisiae) 164164 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15415 COQ5 coenzyme Q5 homolog, methyltransferase (S. cerevisiae) 224504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15416 CORO1B coronin, actin binding protein, 1B 261056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15417 CORO1C coronin, actin binding protein, 1C 328160 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15418 CORT cortistatin 96880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15419 COTL1 coactosin-like 1 (Dictyostelium) 73840 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15420 COX19 COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) 56616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15421 COX4NB COX4 neighbor 139056 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15422 COX5A cytochrome c oxidase subunit Va 81760 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15423 COX5B cytochrome c oxidase subunit Vb 71288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15424 COX6A1 cytochrome c oxidase subunit VIa polypeptide 1 76608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15425 COX6B1 cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous) 61152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15426 COX6B2 cytochrome c oxidase subunit VIb polypeptide 2 (testis) 58552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15427 COX7A2 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) 62272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15428 COX7A2L cytochrome c oxidase subunit VIIa polypeptide 2 like 79968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15429 COX7B cytochrome c oxidase subunit VIIb 39984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15430 COX7C cytochrome c oxidase subunit VIIc 44800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15431 COX8A cytochrome c oxidase subunit 8A (ubiquitous) 48696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15432 CPA2 carboxypeptidase A2 (pancreatic) 292096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15433 CPLX1 complexin 1 83476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15434 CPLX2 complexin 2 82936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15435 CPNE7 copine VII 316876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15436 CPSF3L cleavage and polyadenylation specific factor 3-like 302932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15437 CPT1C carnitine palmitoyltransferase 1C 550072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15438 CRABP1 cellular retinoic acid binding protein 1 85616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15439 CRABP2 cellular retinoic acid binding protein 2 96992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15440 CRB2 crumbs homolog 2 (Drosophila) 567720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15441 CRB3 crumbs homolog 3 (Drosophila) 90524 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15442 CRCP 105504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15443 CRCT1 cysteine-rich C-terminal 1 45332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15444 CREG1 cellular repressor of E1A-stimulated genes 1 71904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15445 CRH corticotropin releasing hormone 57556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15446 CRIP1 cysteine-rich protein 1 (intestinal) 43120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15447 CRIP2 cysteine-rich protein 2 64092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15448 CRIP3 cysteine-rich protein 3 144928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15449 CRIPAK cysteine-rich PAK1 inhibitor 249144 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15450 CRIPT cysteine-rich PDZ-binding protein 70304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15451 CRISP2 cysteine-rich secretory protein 2 170240 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15452 CRK v-crk sarcoma virus CT10 oncogene homolog (avian) 189840 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15453 CRLS1 cardiolipin synthase 1 142688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15454 CROCC ciliary rootlet coiled-coil, rootletin 684972 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15455 CRP C-reactive protein, pentraxin-related 152992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15456 CRYAA crystallin, alpha A 117768 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15457 CRYBA1 crystallin, beta A1 150528 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15458 CRYBA2 crystallin, beta A2 121856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15459 CRYBB2 crystallin, beta B2 142912 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15460 CRYGA crystallin, gamma A 120288 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15461 CRYGD crystallin, gamma D 107240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15462 CRYM crystallin, mu 203616 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15463 CRYZ crystallin, zeta (quinone reductase) 228928 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15464 CRYZL1 crystallin, zeta (quinone reductase)-like 1 245952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15465 CS citrate synthase 323680 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15466 CSAG1 chondrosarcoma associated gene 1 55776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15467 CSDC2 cold shock domain containing C2, RNA binding 80904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15468 CSF2 colony stimulating factor 2 (granulocyte-macrophage) 90524 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15469 CSF3 colony stimulating factor 3 (granulocyte) 136232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15470 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 364448 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -15471 CSH2 chorionic somatomammotropin hormone 2 128660 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15472 CSHL1 chorionic somatomammotropin hormone-like 1 154336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15473 CSN1S1 casein alpha s1 123336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15474 CSNK1E casein kinase 1, epsilon 243208 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15475 CSNK1G2 casein kinase 1, gamma 2 203840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15476 CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein) 135520 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15477 CST11 cystatin 11 96096 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15478 CST2 cystatin SA 98112 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15479 CST3 cystatin C 56000 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15480 CSTB cystatin B (stefin B) 53536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15481 CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa 400064 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15482 CTAG2 cancer/testis antigen 2 148288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15483 CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 189952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15484 CTGF connective tissue growth factor 176408 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15485 CTRB1 chymotrypsinogen B1 59056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15486 CTRB2 chymotrypsinogen B2 67084 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15487 CTSK cathepsin K 228032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15488 CTU2 265860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15489 CTXN1 cortexin 1 28700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15490 CUEDC1 CUE domain containing 1 230272 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15491 CUTA cutA divalent cation tolerance homolog (E. coli) 144984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15492 CWC25 284216 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15493 CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) 65324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15494 CXCL13 chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) 77504 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15495 CXCL2 chemokine (C-X-C motif) ligand 2 54124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15496 CXCL3 chemokine (C-X-C motif) ligand 3 56472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15497 CXCR3 chemokine (C-X-C motif) receptor 3 256452 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15498 CXCR6 chemokine (C-X-C motif) receptor 6 231392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15499 CXorf26 chromosome X open reading frame 26 158000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15500 CXorf27 chromosome X open reading frame 27 80056 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15501 CXorf38 chromosome X open reading frame 38 200032 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15502 CXorf40A chromosome X open reading frame 40A 108640 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15503 CXorf40B chromosome X open reading frame 40B 108640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15504 CXorf41 chromosome X open reading frame 41 149856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15505 CXorf48 chromosome X open reading frame 48 123872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15506 CXorf56 chromosome X open reading frame 56 156128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15507 CYB561 cytochrome b-561 172220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15508 CYB561D2 cytochrome b-561 domain containing 2 152124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15509 CYB5B cytochrome b5 type B (outer mitochondrial membrane) 105952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15510 CYB5D2 cytochrome b5 domain containing 2 180572 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15511 CYBA cytochrome b-245, alpha polypeptide 64464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15512 CYCS cytochrome c, somatic 73024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15513 CYHR1 cysteine/histidine-rich 1 96460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15514 CYP26C1 cytochrome P450, family 26, subfamily C, polypeptide 1 128552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15515 CYP2B6 cytochrome P450, family 2, subfamily B, polypeptide 6 338688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15516 CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6 312984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15517 CYP4X1 cytochrome P450, family 4, subfamily X, polypeptide 1 353472 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15518 CYS1 cystin 1 37408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15519 CYTH4 277088 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15520 CYYR1 cysteine/tyrosine-rich 1 107156 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15521 CYorf15A chromosome Y open reading frame 15A 57120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15522 CYorf15B chromosome Y open reading frame 15B 78540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15523 D2HGDH D-2-hydroxyglutarate dehydrogenase 116584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15524 DAND5 DAN domain family, member 5 129472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15525 DAP3 death associated protein 3 278880 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15526 DAPK2 death-associated protein kinase 2 256040 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15527 DAPL1 death associated protein-like 1 67728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15528 DAZAP2 DAZ associated protein 2 135296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15529 DBI diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) 82880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15530 DBNDD2 dysbindin (dystrobrevin binding protein 1) domain containing 2 96472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15531 DBT dihydrolipoamide branched chain transacylase E2 334432 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15532 DCAF16 146720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15533 DCI dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase) 136976 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15534 DCTN5 dynactin 5 (p25) 128352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15535 DCTN6 dynactin 6 134624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15536 DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) 167104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15537 DCXR dicarbonyl/L-xylulose reductase 125720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15538 DDAH1 dimethylarginine dimethylaminohydrolase 1 159460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15539 DDAH2 dimethylarginine dimethylaminohydrolase 2 123480 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15540 DDIT3 DNA-damage-inducible transcript 3 116032 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15541 DDIT4 DNA-damage-inducible transcript 4 153664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15542 DDN dendrin 366576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15543 DDTL D-dopachrome tautomerase-like 28000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15544 DDX39 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 296576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15545 DDX3Y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked 287000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15546 DDX51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 299768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15547 DEDD2 death effector domain containing 2 187992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15548 DEFA1 defensin, alpha 1 50456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15549 DEFA1B 50456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15550 DEFA3 defensin, alpha 3, neutrophil-specific 50456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15551 DEFA4 defensin, alpha 4, corticostatin 67648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15552 DEFA5 defensin, alpha 5, Paneth cell-specific 65632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15553 DEFA6 defensin, alpha 6, Paneth cell-specific 69664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15554 DEFB1 defensin, beta 1 48160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15555 DEFB104A defensin, beta 104A 54488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15556 DEFB104B defensin, beta 104B 54488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15557 DEFB106A defensin, beta 106A 77644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15558 DEFB106B defensin, beta 106B 77644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15559 DEFB108B defensin, beta 108B 51520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15560 DEFB110 defensin, beta 110 78176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15561 DEFB115 defensin, beta 115 61600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15562 DEFB118 defensin, beta 118 85120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15563 DEFB121 defensin, beta 121 53536 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15564 DEFB123 defensin, beta 123 47488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15565 DEFB124 defensin, beta 124 50176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15566 DEFB131 defensin, beta 131 49504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15567 DEFB132 66052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15568 DEFB4A 13888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15569 DEGS2 degenerative spermatocyte homolog 2, lipid desaturase (Drosophila) 138264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15570 DERL1 Der1-like domain family, member 1 176512 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15571 DERL3 Der1-like domain family, member 3 141764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15572 DEXI 52304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15573 DGCR6 DiGeorge syndrome critical region gene 6 120708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15574 DGCR6L DiGeorge syndrome critical region gene 6-like 126084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15575 DGKQ diacylglycerol kinase, theta 110kDa 336556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15576 DGUOK deoxyguanosine kinase 193088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15577 DHDPSL 226688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15578 DHRS11 147840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15579 DHRS13 dehydrogenase/reductase (SDR family) member 13 212768 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15580 DHRS4 dehydrogenase/reductase (SDR family) member 4 194656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15581 DHRS4L2 dehydrogenase/reductase (SDR family) member 4 like 2 160672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15582 DHRS7 dehydrogenase/reductase (SDR family) member 7 234416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15583 DHRS7B dehydrogenase/reductase (SDR family) member 7B 222080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15584 DHX34 DEAH (Asp-Glu-Ala-His) box polypeptide 34 696528 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15585 DIMT1L DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) 214788 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15586 DIRAS1 DIRAS family, GTP-binding RAS-like 1 110768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15587 DKFZp761E198 267540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15588 DKKL1 dickkopf-like 1 (soggy) 167776 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15589 DLEU7 deleted in lymphocytic leukemia, 7 28532 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15590 DLX1 distal-less homeobox 1 174720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15591 DLX6 distal-less homeobox 6 131128 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15592 DMAP1 DNA methyltransferase 1 associated protein 1 323456 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15593 DMPK dystrophia myotonica-protein kinase 375812 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15594 DNAH17 dynein, axonemal, heavy chain 17 2982940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15595 DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 216132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15596 DNAJB2 DnaJ (Hsp40) homolog, subfamily B, member 2 213780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15597 DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 182784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15598 DNAJC12 DnaJ (Hsp40) homolog, subfamily C, member 12 144256 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15599 DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 106712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15600 DNAJC25-GNG10 29120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15601 DNAJC4 DnaJ (Hsp40) homolog, subfamily C, member 4 142688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15602 DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 137312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15603 DNAL1 dynein, axonemal, light chain 1 114168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15604 DNAL4 dynein, axonemal, light chain 4 69976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15605 DNASE1 deoxyribonuclease I 197344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15606 DNASE1L1 deoxyribonuclease I-like 1 207516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15607 DNASE1L2 deoxyribonuclease I-like 2 97944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15608 DNASE2 deoxyribonuclease II, lysosomal 234984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15609 DNASE2B deoxyribonuclease II beta 232736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15610 DND1 dead end homolog 1 (zebrafish) 165032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15611 DNLZ DNL-type zinc finger 66192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15612 DOK3 docking protein 3 286164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15613 DOLPP1 dolichyl pyrophosphate phosphatase 1 161056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15614 DOM3Z dom-3 homolog Z (C. elegans) 226548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15615 DPF1 D4, zinc and double PHD fingers family 1 242204 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15616 DPM2 dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit 60704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15617 DPM3 dolichyl-phosphate mannosyltransferase polypeptide 3 81928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15618 DPPA5 developmental pluripotency associated 5 81312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15619 DPRX divergent-paired related homeobox 131712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15620 DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) 121632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15621 DRAM1 148520 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15622 DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 127924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15623 DRD4 dopamine receptor D4 75880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15624 DSCR6 Down syndrome critical region gene 6 107744 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15625 DULLARD dullard homolog (Xenopus laevis) 165676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15626 DUPD1 dual specificity phosphatase and pro isomerase domain containing 1 151116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15627 DUS1L dihydrouridine synthase 1-like (S. cerevisiae) 272888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15628 DUS2L dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) 341460 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15629 DUSP12 dual specificity phosphatase 12 229904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15630 DUSP14 dual specificity phosphatase 14 131264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15631 DUSP2 dual specificity phosphatase 2 125812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15632 DUSP21 dual specificity phosphatase 21 129248 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15633 DUSP23 dual specificity phosphatase 23 42560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15634 DUSP28 dual specificity phosphatase 28 42168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15635 DUSP8 dual specificity phosphatase 8 165396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15636 DUT deoxyuridine triphosphatase 113540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15637 DVL1 dishevelled, dsh homolog 1 (Drosophila) 159048 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15638 DYNLL1 dynein, light chain, LC8-type 1 62272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15639 DYNLL2 dynein, light chain, LC8-type 2 62272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15640 DYNLT1 dynein, light chain, Tctex-type 1 81088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15641 DYNLT3 dynein, light chain, Tctex-type 3 75488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15642 E2F1 E2F transcription factor 1 239068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15643 E2F6 E2F transcription factor 6 186544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15644 E4F1 E4F transcription factor 1 341572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15645 EAF2 ELL associated factor 2 180768 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15646 EARS2 glutamyl-tRNA synthetase 2, mitochondrial (putative) 345660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15647 EBPL emopamil binding protein-like 105728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15648 ECEL1 endothelin converting enzyme-like 1 404300 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -15649 ECHDC3 enoyl Coenzyme A hydratase domain containing 3 163400 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15650 ECSCR 43440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15651 EDC3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) 347424 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15652 EDDM3B 100352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15653 EDF1 endothelial differentiation-related factor 1 105476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15654 EDN2 endothelin 2 104516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15655 EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 327992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15656 EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 121184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15657 EFNA1 ephrin-A1 142912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15658 EFNA2 ephrin-A2 88424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15659 EFS embryonal Fyn-associated substrate 342952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15660 EFTUD1 elongation factor Tu GTP binding domain containing 1 770336 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15661 EGFL7 EGF-like-domain, multiple 7 90900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15662 EGR4 early growth response 4 245480 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15663 EHF ets homologous factor 209440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15664 EID1 EP300 interacting inhibitor of differentiation 1 127232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15665 EID2B EP300 interacting inhibitor of differentiation 2B 94640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15666 EIF1 eukaryotic translation initiation factor 1 80192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15667 EIF1AD eukaryotic translation initiation factor 1A domain containing 116032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15668 EIF1AX eukaryotic translation initiation factor 1A, X-linked 100992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15669 EIF1AY eukaryotic translation initiation factor 1A, Y-linked 61040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15670 EIF1B eukaryotic translation initiation factor 1B 80192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15671 EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa 361168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15672 EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa 218624 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15673 EIF3G eukaryotic translation initiation factor 3, subunit G 225568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15674 EIF3K eukaryotic translation initiation factor 3, subunit K 154336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15675 EIF4A1 eukaryotic translation initiation factor 4A, isoform 1 283360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15676 EIF4A3 eukaryotic translation initiation factor 4A, isoform 3 283668 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15677 EIF4E eukaryotic translation initiation factor 4E 158136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15678 EIF4E3 eukaryotic translation initiation factor 4E family member 3 81656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15679 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 49280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15680 EIF4EBP3 eukaryotic translation initiation factor 4E binding protein 3 55568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15681 EIF4H eukaryotic translation initiation factor 4H 171752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15682 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 30904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15683 ELK1 ELK1, member of ETS oncogene family 195672 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15684 ELOF1 elongation factor 1 homolog (S. cerevisiae) 59136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15685 ELOVL3 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 185696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15686 EMD emerin (Emery-Dreifuss muscular dystrophy) 140588 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15687 EME2 essential meiotic endonuclease 1 homolog 2 (S. pombe) 170800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15688 EMID2 EMI domain containing 2 247456 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15689 EMP1 epithelial membrane protein 1 109760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15690 EMP2 epithelial membrane protein 2 116480 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15691 EMP3 epithelial membrane protein 3 113792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15692 ENDOG endonuclease G 77856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15693 ENGASE 462448 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15694 ENHO 52640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15695 ENO1 enolase 1, (alpha) 302176 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15696 ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 241416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15697 ENTPD8 ectonucleoside triphosphate diphosphohydrolase 8 289492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15698 EPB49 erythrocyte membrane protein band 4.9 (dematin) 274508 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15699 EPGN epithelial mitogen homolog (mouse) 93632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15700 EPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) 165984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15701 EPO erythropoietin 129808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15702 EPOR erythropoietin receptor 294344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15703 EPPK1 epiplakin 1 1064840 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15704 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 277536 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15705 ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 199136 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15706 ERGIC2 ERGIC and golgi 2 265664 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15707 ERH enhancer of rudimentary homolog (Drosophila) 74144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15708 ERLIN1 ER lipid raft associated 1 222488 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15709 ERN1 endoplasmic reticulum to nucleus signaling 1 626764 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15710 ERP29 endoplasmic reticulum protein 29 178752 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15711 ERV3 endogenous retroviral sequence 3 (includes zinc finger protein H-plk/HPF9) 364752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15712 ESPN espin 261196 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15713 ESPNL espin-like 310168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15714 ETHE1 ethylmalonic encephalopathy 1 158592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15715 ETV2 ets variant gene 2 169492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15716 ETV7 ets variant gene 7 (TEL2 oncogene) 232096 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15717 EVI5L ecotropic viral integration site 5-like 348656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15718 EVX1 even-skipped homeobox 1 157976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15719 EWSR1 Ewing sarcoma breakpoint region 1 482944 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15720 EXOC3 exocyst complex component 3 489756 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15721 EXOSC1 exosome component 1 135436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15722 EXOSC3 exosome component 3 188784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15723 EXOSC4 exosome component 4 148120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15724 EXOSC7 exosome component 7 198268 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15725 EXOSC8 exosome component 8 195864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15726 EXT2 exostoses (multiple) 2 515116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15727 EYA3 eyes absent homolog 3 (Drosophila) 400960 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15728 F2RL3 coagulation factor II (thrombin) receptor-like 3 164312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15729 FABP12 98336 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15730 FABP9 fatty acid binding protein 9, testis 92960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15731 FADD Fas (TNFRSF6)-associated via death domain 117376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15732 FADS1 fatty acid desaturase 1 279160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15733 FAHD1 fumarylacetoacetate hydrolase domain containing 1 128296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15734 FAHD2A fumarylacetoacetate hydrolase domain containing 2A 217952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15735 FAHD2B fumarylacetoacetate hydrolase domain containing 2B 217952 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15736 FAM100A family with sequence similarity 100, member A 77168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15737 FAM100B family with sequence similarity 100, member B 61276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15738 FAM101A family with sequence similarity 101, member A 83944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15739 FAM102B family with sequence similarity 102, member B 233856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15740 FAM103A1 family with sequence similarity 103, member A1 81172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15741 FAM108A1 family with sequence similarity 108, member A1 140840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15742 FAM110A family with sequence similarity 110, member A 104636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15743 FAM110C family with sequence similarity 110, member C 106512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15744 FAM113A family with sequence similarity 113, member A 309856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15745 FAM115A family with sequence similarity 115, member A 222516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15746 FAM116B family with sequence similarity 116, member B 225660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15747 FAM119B family with sequence similarity 119, member B 187264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15748 FAM122A family with sequence similarity 122A 180068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15749 FAM122C family with sequence similarity 122C 113568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15750 FAM125A family with sequence similarity 125, member A 174048 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15751 FAM128A family with sequence similarity 128, member A 36288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15752 FAM132A family with sequence similarity 132, member A 95340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15753 FAM133B family with sequence similarity 133, member B 129744 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15754 FAM136A family with sequence similarity 136, member A 96096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15755 FAM150A family with sequence similarity 150, member A 47488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15756 FAM150B family with sequence similarity 150, member B 49728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15757 FAM153C family with sequence similarity 153, member C 49224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15758 FAM159A 123704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15759 FAM160B2 452132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15760 FAM165B 41440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15761 FAM166A 206276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15762 FAM168A 163968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15763 FAM168B 120280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15764 FAM173A 44240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15765 FAM174B 56260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15766 FAM176B 56084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15767 FAM177B 110432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15768 FAM18A family with sequence similarity 18, member A 140284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15769 FAM18B family with sequence similarity 18, member B 143072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15770 FAM18B2 family with sequence similarity 18, member B2 180776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15771 FAM195A 45528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15772 FAM19A3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 117824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15773 FAM19A4 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 99232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15774 FAM19A5 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 73416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15775 FAM20C family with sequence similarity 20, member C 53380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15776 FAM21A family with sequence similarity 21, member A 280592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15777 FAM22D family with sequence similarity 22, member D 147848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15778 FAM24B family with sequence similarity 24, member B 65632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15779 FAM26D family with sequence similarity 26, member D 87584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15780 FAM32A family with sequence similarity 32, member A 57352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15781 FAM36A family with sequence similarity 36, member A 73248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15782 FAM3A family with sequence similarity 3, member A 133384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15783 FAM3C family with sequence similarity 3, member C 161280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15784 FAM3D family with sequence similarity 3, member D 159264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15785 FAM43A family with sequence similarity 43, member A 136596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15786 FAM43B family with sequence similarity 43, member B 68908 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15787 FAM48B1 family with sequence similarity 48, member B1 512528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15788 FAM48B2 family with sequence similarity 48, member B2 468344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15789 FAM50A family with sequence similarity 50, member A 213824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15790 FAM53B family with sequence similarity 53, member B 237748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15791 FAM72A family with sequence similarity 72, member A 69440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15792 FAM72B family with sequence similarity 72, member B 98588 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15793 FAM75A3 family with sequence similarity 75, member A3 312808 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15794 FAM76B family with sequence similarity 76, member B 237440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15795 FAM78B family with sequence similarity 78, member B 177856 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15796 FAM83F family with sequence similarity 83, member F 206668 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15797 FAM84B family with sequence similarity 84, member B 139104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15798 FAM86B1 family with sequence similarity 86, member B1 84208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15799 FAM86C family with sequence similarity 86, member C 110404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15800 FAM89A family with sequence similarity 89, member A 60032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15801 FAM96B family with sequence similarity 96, member B 89852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15802 FANCE Fanconi anemia, complementation group E 309596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15803 FANCL Fanconi anemia, complementation group L 268576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15804 FASTK Fas-activated serine/threonine kinase 291788 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15805 FBP1 fructose-1,6-bisphosphatase 1 234080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15806 FBRS fibrosin 191284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15807 FBXL15 F-box and leucine-rich repeat protein 15 73844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15808 FBXL16 F-box and leucine-rich repeat protein 16 212828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15809 FBXL22 F-box and leucine-rich repeat protein 22 116620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15810 FBXL6 F-box and leucine-rich repeat protein 6 242396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15811 FBXL8 F-box and leucine-rich repeat protein 8 105112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15812 FBXO17 F-box protein 17 124852 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15813 FBXO2 F-box protein 2 151476 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15814 FBXO28 F-box protein 28 218024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15815 FBXO33 F-box protein 33 297640 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15816 FBXO41 F-box protein 41 353268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15817 FBXO8 F-box protein 8 219520 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -15818 FBXW5 F-box and WD repeat domain containing 5 270740 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15819 FBXW9 F-box and WD repeat domain containing 9 266524 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15820 FCER1G Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide 62944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15821 FCGR1B Fc fragment of IgG, high affinity Ib, receptor (CD64) 155204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15822 FCGR2B Fc fragment of IgG, low affinity IIb, receptor (CD32) 170340 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15823 FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b) 153244 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15824 FCGRT Fc fragment of IgG, receptor, transporter, alpha 238836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15825 FDPS farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) 291064 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15826 FDX1 ferredoxin 1 85568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15827 FDX1L ferredoxin 1-like 113540 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15828 FEM1B fem-1 homolog b (C. elegans) 420448 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15829 FEM1C fem-1 homolog c (C. elegans) 417088 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15830 FES feline sarcoma oncogene 509484 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15831 FEV FEV (ETS oncogene family) 78552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15832 FFAR1 free fatty acid receptor 1 128972 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15833 FGF10 fibroblast growth factor 10 143136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15834 FGF16 fibroblast growth factor 16 80416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15835 FGF18 fibroblast growth factor 18 140000 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15836 FGF2 fibroblast growth factor 2 (basic) 98168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15837 FGF22 fibroblast growth factor 22 43092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15838 FGF4 fibroblast growth factor 4 (heparin secretory transforming protein 1, Kaposi sarcoma oncogene) 63588 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15839 FGFBP2 fibroblast growth factor binding protein 2 151424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15840 FGFBP3 fibroblast growth factor binding protein 3 58664 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15841 FGFRL1 fibroblast growth factor receptor-like 1 176624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15842 FGL2 fibrinogen-like 2 297472 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15843 FIBIN 143360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15844 FIBP fibroblast growth factor (acidic) intracellular binding protein 238056 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15845 FIGLA folliculogenesis specific basic helix-loop-helix 95872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15846 FITM1 186788 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15847 FITM2 174004 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15848 FJX1 four jointed box 1 (Drosophila) 93384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15849 FKBP1A FK506 binding protein 1A, 12kDa 56000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15850 FKBP1B FK506 binding protein 1B, 12.6 kDa 77728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15851 FKBP2 FK506 binding protein 2, 13kDa 100576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15852 FKBP4 FK506 binding protein 4, 59kDa 308924 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15853 FLJ10357 966800 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15854 FLJ35220 158988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15855 FLJ37543 81536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15856 FLJ46321 1059520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15857 FLOT2 flotillin 2 297756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15858 FLYWCH1 FLYWCH-type zinc finger 1 327328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15859 FLYWCH2 FLYWCH family member 2 91168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15860 FN3K fructosamine 3 kinase 181216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15861 FNDC5 fibronectin type III domain containing 5 98560 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15862 FOLR2 folate receptor 2 (fetal) 175364 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15863 FOSL1 FOS-like antigen 1 162940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15864 FOXB1 forkhead box B1 168308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15865 FOXB2 forkhead box B2 165300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15866 FOXC2 forkhead box C2 (MFH-1, mesenchyme forkhead 1) 158452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15867 FOXD1 forkhead box D1 91284 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15868 FOXD2 forkhead box D2 95508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15869 FOXD3 forkhead box D3 99876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15870 FOXD4L3 forkhead box D4-like 3 124968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15871 FOXE1 forkhead box E1 (thyroid transcription factor 2) 66360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15872 FOXE3 forkhead box E3 57232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15873 FOXJ1 forkhead box J1 136884 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15874 FOXL2 forkhead box L2 106260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15875 FPGS folylpolyglutamate synthase 339808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15876 FRG1 FSHD region gene 1 170436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15877 FRG2B FSHD region gene 2 family, member B 151956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15878 FRG2C FSHD region gene 2 family, member C 193760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15879 FSCN1 fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 262388 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15880 FSCN2 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) 111104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15881 FSTL3 follistatin-like 3 (secreted glycoprotein) 80192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15882 FTH1 ferritin, heavy polypeptide 1 117320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15883 FTL ferritin, light polypeptide 121856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15884 FTSJ1 FtsJ homolog 1 (E. coli) 231616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15885 FUCA2 fucosidase, alpha-L- 2, plasma 293528 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15886 FUS fusion (involved in t(12;16) in malignant liposarcoma) 364184 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15887 FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 173404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15888 FUT5 fucosyltransferase 5 (alpha (1,3) fucosyltransferase) 189392 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15889 FUT7 fucosyltransferase 7 (alpha (1,3) fucosyltransferase) 102340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15890 FUZ fuzzy homolog (Drosophila) 206916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15891 FXC1 fracture callus 1 homolog (rat) 72492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15892 FXYD1 FXYD domain containing ion transport regulator 1 (phospholemman) 67872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15893 FXYD2 FXYD domain containing ion transport regulator 2 40332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15894 FXYD3 FXYD domain containing ion transport regulator 3 87360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15895 FXYD7 FXYD domain containing ion transport regulator 7 51968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15896 FZD5 frizzled homolog 5 (Drosophila) 317996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15897 FZD9 frizzled homolog 9 (Drosophila) 297668 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15898 FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 251476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15899 G0S2 G0/G1switch 2 64232 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15900 GAA glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II) 601604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15901 GABARAP GABA(A) receptor-associated protein 82880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15902 GABARAPL1 GABA(A) receptor-associated protein like 1 76352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15903 GABARAPL2 GABA(A) receptor-associated protein-like 2 79688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15904 GABRD gamma-aminobutyric acid (GABA) A receptor, delta 238128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15905 GADD45A growth arrest and DNA-damage-inducible, alpha 108668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15906 GADD45B growth arrest and DNA-damage-inducible, beta 109844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15907 GADD45G growth arrest and DNA-damage-inducible, gamma 93432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15908 GADD45GIP1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 116228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15909 GADL1 glutamate decarboxylase-like 1 238336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15910 GAGE1 G antigen 1 31080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15911 GAL galanin prepropeptide 80668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15912 GAL3ST3 galactose-3-O-sulfotransferase 3 128632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15913 GALK1 galactokinase 1 194824 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15914 GALNT4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 387632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15915 GALP galanin-like peptide 83104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15916 GALR2 galanin receptor 2 170604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15917 GALR3 galanin receptor 3 117656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15918 GAPDH glyceraldehyde-3-phosphate dehydrogenase 214228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15919 GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic 284116 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15920 GAS2L1 growth arrest-specific 2 like 1 293104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15921 GATA5 GATA binding protein 5 128692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15922 GATAD1 GATA zinc finger domain containing 1 129248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15923 GATC glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial) 95648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15924 GATSL3 175392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15925 GBA glucosidase, beta; acid (includes glucosylceramidase) 370720 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15926 GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 237112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15927 GCA grancalcin, EF-hand calcium binding protein 153664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15928 GCH1 GTP cyclohydrolase 1 (dopa-responsive dystonia) 162512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15929 GCSH glycine cleavage system protein H (aminomethyl carrier) 87360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15930 GDA guanine deaminase 318304 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15931 GDE1 glycerophosphodiester phosphodiesterase 1 204148 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15932 GDF7 growth differentiation factor 7 121716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15933 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 222880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15934 GEMIN7 gem (nuclear organelle) associated protein 7 79940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15935 GET4 189168 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15936 GFER growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) 63028 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15937 GGT6 gamma-glutamyltransferase 6 254468 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15938 GGTLC2 gamma-glutamyltransferase light chain 2 125832 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15939 GHRH growth hormone releasing hormone 76832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15940 GINS1 GINS complex subunit 1 (Psf1 homolog) 138656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15941 GIP gastric inhibitory polypeptide 107968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15942 GIPC1 GIPC PDZ domain containing family, member 1 191996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15943 GIPR gastric inhibitory polypeptide receptor 295884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15944 GIYD1 GIY-YIG domain containing 1 95900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15945 GIYD2 GIY-YIG domain containing 2 95900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15946 GJA3 gap junction protein, alpha 3, 46kDa 163388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15947 GJB2 gap junction protein, beta 2, 26kDa 149828 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15948 GJB5 gap junction protein, beta 5, 31.1kDa 185024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15949 GJB6 gap junction protein, beta 6, 30kDa 176960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15950 GJD3 gap junction protein, delta 3, 31.9kDa 50548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15951 GLIPR2 104832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15952 GLIS2 GLIS family zinc finger 2 240212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15953 GLO1 glyoxalase I 123144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15954 GLRX5 glutaredoxin 5 40992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15955 GLS glutaminase 379008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15956 GLTP glycolipid transfer protein 145600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15957 GLTPD1 glycolipid transfer protein domain containing 1 43876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15958 GMPPB GDP-mannose pyrophosphorylase B 265888 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15959 GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 242280 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15960 GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 245728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15961 GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 208152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15962 GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 220728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15963 GNG10 guanine nucleotide binding protein (G protein), gamma 10 35840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15964 GNG11 guanine nucleotide binding protein (G protein), gamma 11 51520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15965 GNG12 guanine nucleotide binding protein (G protein), gamma 12 50848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15966 GNG13 guanine nucleotide binding protein (G protein), gamma 13 47488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15967 GNG2 guanine nucleotide binding protein (G protein), gamma 2 50176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15968 GNG5 guanine nucleotide binding protein (G protein), gamma 5 41020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15969 GNG8 guanine nucleotide binding protein (G protein), gamma 8 49420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15970 GNGT2 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 48832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15971 GNPDA1 glucosamine-6-phosphate deaminase 1 200256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15972 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 128800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15973 GNPTG N-acetylglucosamine-1-phosphate transferase, gamma subunit 171528 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15974 GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 65184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15975 GNRH2 gonadotropin-releasing hormone 2 83160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15976 GOLGA2B 101024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15977 GOLGA6A 243768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15978 GOLGA6B golgi autoantigen, golgin subfamily a, 6B 252896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15979 GOLT1A golgi transport 1 homolog A (S. cerevisiae) 93856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15980 GP9 glycoprotein IX (platelet) 80864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15981 GPATCH4 G patch domain containing 4 263172 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15982 GPHA2 glycoprotein hormone alpha 2 90048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15983 GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 89320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15984 GPN2 190428 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15985 GPR107 G protein-coupled receptor 107 361512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15986 GPR109B G protein-coupled receptor 109B 261632 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15987 GPR120 G protein-coupled receptor 120 220864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15988 GPR123 G protein-coupled receptor 123 176744 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15989 GPR135 G protein-coupled receptor 135 164192 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15990 GPR137 G protein-coupled receptor 137 277340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15991 GPR137B G protein-coupled receptor 137B 261268 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15992 GPR137C G protein-coupled receptor 137C 251404 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15993 GPR142 G protein-coupled receptor 142 291816 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15994 GPR146 G protein-coupled receptor 146 208068 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15995 GPR150 G protein-coupled receptor 150 73836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15996 GPR157 G protein-coupled receptor 157 178408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15997 GPR172A G protein-coupled receptor 172A 245672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15998 GPR20 G protein-coupled receptor 20 160412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15999 GPR25 G protein-coupled receptor 25 131880 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16000 GPR27 G protein-coupled receptor 27 86408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16001 GPR3 G protein-coupled receptor 3 223328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16002 GPR35 G protein-coupled receptor 35 183428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16003 GPR44 G protein-coupled receptor 44 94268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16004 GPR62 G protein-coupled receptor 62 92344 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16005 GPR68 G protein-coupled receptor 68 162928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16006 GPR78 G protein-coupled receptor 78 181076 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16007 GPR81 G protein-coupled receptor 81 234080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16008 GPR82 G protein-coupled receptor 82 227360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16009 GPR89A G protein-coupled receptor 89A 260624 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16010 GPRIN2 G protein regulated inducer of neurite outgrowth 2 227792 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16011 GPS1 G protein pathway suppressor 1 268120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16012 GPSM1 G-protein signaling modulator 1 (AGS3-like, C. elegans) 196196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16013 GPT glutamic-pyruvate transaminase (alanine aminotransferase) 208768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16014 GPX4 glutathione peroxidase 4 (phospholipid hydroperoxidase) 138516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16015 GPX7 glutathione peroxidase 7 109676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16016 GRAMD4 GRAM domain containing 4 366256 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16017 GRAP GRB2-related adaptor protein 73044 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16018 GRB10 growth factor receptor-bound protein 10 414176 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16019 GREM2 gremlin 2, cysteine knot superfamily, homolog (Xenopus laevis) 107408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16020 GRIN3B glutamate receptor, ionotropic, N-methyl-D-aspartate 3B 301448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16021 GRINA glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) 227392 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16022 GRINL1A glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A 241080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16023 GSC goosecoid homeobox 59276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16024 GSDMD 229444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16025 GSN gelsolin (amyloidosis, Finnish type) 506140 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16026 GSPT1 G1 to S phase transition 1 356808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16027 GSTA2 glutathione S-transferase A2 155232 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16028 GSTA4 glutathione S-transferase A4 155232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16029 GSTK1 glutathione S-transferase kappa 1 196448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16030 GSTP1 glutathione S-transferase pi 132916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16031 GSTT1 glutathione S-transferase theta 1 166432 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16032 GSX1 GS homeobox 1 98196 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16033 GTF2A1L general transcription factor IIA, 1-like 334168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16034 GTF2A2 general transcription factor IIA, 2, 12kDa 77504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16035 GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa 202496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16036 GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa 201884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16037 GTF2H2C 280420 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16038 GTF2H2D 280420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16039 GTF2H5 general transcription factor IIH, polypeptide 5 50176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16040 GTF2I general transcription factor II, i 451344 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16041 GTF2IRD2 GTF2I repeat domain containing 2 431240 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16042 GTF2IRD2B GTF2I repeat domain containing 2B 389312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16043 GTPBP5 GTP binding protein 5 (putative) 276024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16044 GTSF1 gametocyte specific factor 1 119168 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16045 GUCA2A guanylate cyclase activator 2A (guanylin) 69896 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16046 GUK1 guanylate kinase 1 133896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16047 GYG1 glycogenin 1 242816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16048 H1F0 H1 histone family, member 0 118664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16049 H1FOO H1 histone family, member O, oocyte-specific 156132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16050 H1FX H1 histone family, member X 84616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16051 H2AFJ H2A histone family, member J 88256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16052 H2AFX H2A histone family, member X 70308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16053 H3F3A H3 histone, family 3A 93408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16054 HAGH hydroxyacylglutathione hydrolase 197708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16055 HAGHL hydroxyacylglutathione hydrolase-like 72940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16056 HAUS4 252672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16057 HAUS7 229032 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16058 HBA1 hemoglobin, alpha 1 62516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16059 HBA2 hemoglobin, alpha 2 42112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16060 HBG1 hemoglobin, gamma A 61572 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16061 HBG2 hemoglobin, gamma G 83388 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16062 HBM hemoglobin, mu 63812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16063 HBQ1 hemoglobin, theta 1 46480 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16064 HCFC1 host cell factor C1 (VP16-accessory protein) 1148960 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16065 HCN2 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 311920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16066 HCST hematopoietic cell signal transducer 63308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16067 HDAC10 histone deacetylase 10 312060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16068 HDAC8 histone deacetylase 8 283136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16069 HDDC3 HD domain containing 3 72772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16070 HDGFRP2 303404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16071 HDHD1A haloacid dehalogenase-like hydrolase domain containing 1A 144008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16072 HDHD2 haloacid dehalogenase-like hydrolase domain containing 2 180096 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16073 HEATR7A 322080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16074 HEMK1 HemK methyltransferase family member 1 236768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16075 HES3 hairy and enhancer of split 3 (Drosophila) 38304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16076 HES4 hairy and enhancer of split 4 (Drosophila) 47152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16077 HES6 hairy and enhancer of split 6 (Drosophila) 66812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16078 HES7 hairy and enhancer of split 7 (Drosophila) 65756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16079 HEXA hexosaminidase A (alpha polypeptide) 368704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16080 HEXDC hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing 339472 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16081 HEXIM1 hexamethylene bis-acetamide inducible 1 199920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16082 HGS hepatocyte growth factor-regulated tyrosine kinase substrate 466544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16083 HIBADH 3-hydroxyisobutyrate dehydrogenase 212352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16084 HIC1 hypermethylated in cancer 1 147616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16085 HIGD1A HIG1 domain family, member 1A 73472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16086 HIGD1C HIG1 domain family, member 1C 61336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16087 HINT3 histidine triad nucleotide binding protein 3 85232 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16088 HIST1H1E histone cluster 1, H1e 137564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16089 HIST1H1T histone cluster 1, H1t 140672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16090 HIST1H2AC histone cluster 1, H2ac 88928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16091 HIST1H2AG histone cluster 1, H2ag 88844 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16092 HIST1H2AH histone cluster 1, H2ah 87584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16093 HIST1H2AI histone cluster 1, H2ai 82460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16094 HIST1H2AK histone cluster 1, H2ak 88928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16095 HIST1H2BG histone cluster 1, H2bg 86240 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16096 HIST1H2BI histone cluster 1, H2bi 86240 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16097 HIST1H2BJ histone cluster 1, H2bj 86240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16098 HIST1H2BN histone cluster 1, H2bn 86240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16099 HIST1H3A histone cluster 1, H3a 92960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16100 HIST1H3E histone cluster 1, H3e 92960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16101 HIST1H3F histone cluster 1, H3f 92960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16102 HIST1H3G histone cluster 1, H3g 92960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16103 HIST1H3H histone cluster 1, H3h 92960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16104 HIST1H3I histone cluster 1, H3i 84896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16105 HIST1H3J histone cluster 1, H3j 92960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16106 HIST1H4C histone cluster 1, H4c 70784 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16107 HIST1H4D histone cluster 1, H4d 70784 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16108 HIST1H4H histone cluster 1, H4h 70784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16109 HIST1H4I histone cluster 1, H4i 70784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16110 HIST1H4J histone cluster 1, H4j 48692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16111 HIST1H4K histone cluster 1, H4k 65240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16112 HIST2H2AC histone cluster 2, H2ac 88256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16113 HIST2H2BE histone cluster 2, H2be 86240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16114 HIST3H2A histone cluster 3, H2a 74984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16115 HIST4H4 histone cluster 4, H4 70784 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16116 HMG20B high-mobility group 20B 111048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16117 HMGA1 high mobility group AT-hook 1 65752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16118 HMGN1 high-mobility group nucleosome binding domain 1 65716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16119 HMGN2 high-mobility group nucleosomal binding domain 2 62272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16120 HMGN3 high mobility group nucleosomal binding domain 3 72576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16121 HMGN4 high mobility group nucleosomal binding domain 4 62048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16122 HMHA1 histocompatibility (minor) HA-1 530216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16123 HMHB1 histocompatibility (minor) HB-1 24440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16124 HMX2 H6 family homeobox 2 95928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16125 HMX3 H6 family homeobox 3 79660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16126 HN1 hematological and neurological expressed 1 115300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16127 HN1L hematological and neurological expressed 1-like 121408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16128 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 152644 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16129 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 212576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16130 HNRNPR heterogeneous nuclear ribonucleoprotein R 437024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16131 HNRPDL heterogeneous nuclear ribonucleoprotein D-like 242916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16132 HNRPLL heterogeneous nuclear ribonucleoprotein L-like 343080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16133 HOPX HOP homeobox 53760 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16134 HOXA10 homeobox A10 154784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16135 HOXA9 homeobox A9 147812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16136 HOXB13 homeobox B13 193228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16137 HOXC8 homeobox C8 165088 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16138 HOXD13 homeobox D13 161588 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16139 HPCAL1 hippocalcin-like 1 132720 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16140 HPCAL4 hippocalcin like 4 131712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16141 HPDL 4-hydroxyphenylpyruvate dioxygenase-like 209720 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16142 HPGD hydroxyprostaglandin dehydrogenase 15-(NAD) 171040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16143 HPGDS 138880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16144 HPN hepsin (transmembrane protease, serine 1) 271964 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16145 HPS4 Hermansky-Pudlak syndrome 4 490084 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -16146 HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog 132916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16147 HRCT1 65716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16148 HRH3 histamine receptor H3 202328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16149 HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 176360 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16150 HS3ST6 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 109900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16151 HS6ST1 heparan sulfate 6-O-sulfotransferase 1 151228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16152 HSBP1 heat shock factor binding protein 1 47768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16153 HSCB HscB iron-sulfur cluster co-chaperone homolog (E. coli) 163380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16154 HSD11B1L hydroxysteroid (11-beta) dehydrogenase 1-like 104616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16155 HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2 207060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16156 HSD17B1 hydroxysteroid (17-beta) dehydrogenase 1 182336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16157 HSD17B11 hydroxysteroid (17-beta) dehydrogenase 11 208544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16158 HSD17B7 hydroxysteroid (17-beta) dehydrogenase 7 237888 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16159 HSPB1 heat shock 27kDa protein 1 78148 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16160 HSPB7 heat shock 27kDa protein family, member 7 (cardiovascular) 114156 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16161 HSPC159 111776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16162 HSPE1 heat shock 10kDa protein 1 (chaperonin 10) 71848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16163 HTR6 5-hydroxytryptamine (serotonin) receptor 6 247496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16164 HYAL1 hyaluronoglucosaminidase 1 291396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16165 HYAL2 hyaluronoglucosaminidase 2 285264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16166 HYAL3 hyaluronoglucosaminidase 3 266952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16167 IAPP islet amyloid polypeptide 62272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16168 ICAM3 intercellular adhesion molecule 3 333116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16169 ICMT isoprenylcysteine carboxyl methyltransferase 151424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16170 ICOSLG inducible T-cell co-stimulator ligand 178048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16171 ICT1 immature colon carcinoma transcript 1 125692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16172 ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 94520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16173 ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 88732 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16174 ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 72940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16175 ID4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein 47480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16176 IDH3B isocitrate dehydrogenase 3 (NAD+) beta 305984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16177 IER2 immediate early response 2 109844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16178 IER3 immediate early response 3 71176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16179 IER3IP1 immediate early response 3 interacting protein 1 56112 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16180 IER5 immediate early response 5 118132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16181 IER5L immediate early response 5-like 88012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16182 IFI27 interferon, alpha-inducible protein 27 80416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16183 IFI27L1 74144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16184 IFI6 interferon, alpha-inducible protein 6 78232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16185 IFITM3 interferon induced transmembrane protein 3 (1-8U) 91756 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16186 IFITM5 interferon induced transmembrane protein 5 84248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16187 IFNA14 interferon, alpha 14 128576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16188 IFNA17 interferon, alpha 17 128576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16189 IFNW1 interferon, omega 1 132608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16190 IFT20 intraflagellar transport 20 homolog (Chlamydomonas) 77280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16191 IFT27 131936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16192 IFT52 intraflagellar transport 52 homolog (Chlamydomonas) 305984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16193 IGF2 insulin-like growth factor 2 (somatomedin A) 150668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16194 IGFALS insulin-like growth factor binding protein, acid labile subunit 223888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16195 IGFBP6 insulin-like growth factor binding protein 6 89824 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16196 IGFBP7 insulin-like growth factor binding protein 7 87360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16197 IGFBPL1 insulin-like growth factor binding protein-like 1 87136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16198 IGFL1 IGF-like family member 1 78176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16199 IGFL2 IGF-like family member 2 88704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16200 IGFL4 IGF-like family member 4 87448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16201 IGLL5 83776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16202 IGSF6 immunoglobulin superfamily, member 6 168000 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16203 IKZF5 IKAROS family zinc finger 5 (Pegasus) 284928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16204 IL17B interleukin 17B 100548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16205 IL17D interleukin 17D 45220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16206 IL17RE interleukin 17 receptor E 353528 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16207 IL18 interleukin 18 (interferon-gamma-inducing factor) 116080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16208 IL1F10 interleukin 1 family, member 10 (theta) 106400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16209 IL1F8 interleukin 1 family, member 8 (eta) 163968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16210 IL22RA2 interleukin 22 receptor, alpha 2 182784 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16211 IL23A interleukin 23, alpha subunit p19 131264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16212 IL28A interleukin 28A (interferon, lambda 2) 140448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16213 IL28B interleukin 28B (interferon, lambda 3) 136864 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16214 IL29 interleukin 29 (interferon, lambda 1) 139552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16215 IL2RG interleukin 2 receptor, gamma (severe combined immunodeficiency) 242072 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16216 IL5 interleukin 5 (colony-stimulating factor, eosinophil) 94304 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16217 ILF2 interleukin enhancer binding factor 2, 45kDa 275296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16218 ILK integrin-linked kinase 315168 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16219 INCA1 156800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16220 INO80C 134176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16221 INPP5E inositol polyphosphate-5-phosphatase, 72 kDa 242652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16222 INS insulin 56896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16223 INS-IGF2 INS-IGF2 92920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16224 INSL3 insulin-like 3 (Leydig cell) 47040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16225 INSL4 insulin-like 4 (placenta) 95872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16226 INSL5 insulin-like 5 93184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16227 INSM1 insulinoma-associated 1 107660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16228 IPCEF1 303968 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16229 IQCC IQ motif containing C 314244 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16230 IRF2BP1 interferon regulatory factor 2 binding protein 1 251664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16231 IRF2BP2 interferon regulatory factor 2 binding protein 2 233212 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16232 IRF7 interferon regulatory factor 7 211644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16233 IRF8 interferon regulatory factor 8 276052 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16234 IRS2 insulin receptor substrate 2 228396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16235 IRX4 iroquois homeobox 4 161196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16236 ISCA1P1 90664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16237 ISCA2 iron-sulfur cluster assembly 2 homolog (S. cerevisiae) 81160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16238 ISG15 ISG15 ubiquitin-like modifier 98812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16239 ISL2 ISL LIM homeobox 2 191016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16240 ISOC1 isochorismatase domain containing 1 186300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16241 ISOC2 isochorismatase domain containing 2 137760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16242 ISX intestine-specific homeobox 168896 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16243 ISY1 ISY1 splicing factor homolog (S. cerevisiae) 200480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16244 ISYNA1 287896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16245 ITGB1BP1 integrin beta 1 binding protein 1 140448 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16246 ITM2C integral membrane protein 2C 157612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16247 ITPKA inositol 1,4,5-trisphosphate 3-kinase A 173404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16248 IVD isovaleryl Coenzyme A dehydrogenase 290724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16249 JAG2 jagged 2 487480 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16250 JAGN1 jagunal homolog 1 (Drosophila) 112792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16251 JAM2 junctional adhesion molecule 2 209616 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16252 JDP2 Jun dimerization protein 2 112688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16253 JMJD4 jumonji domain containing 4 265440 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16254 JMJD5 jumonji domain containing 5 258664 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16255 JMJD7 207624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16256 JMJD8 107944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16257 JOSD2 Josephin domain containing 2 94724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16258 JRK jerky homolog (mouse) 234104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16259 JUB jub, ajuba homolog (Xenopus laevis) 266392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16260 JUN jun oncogene 197232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16261 JUNB jun B proto-oncogene 112028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16262 JUND jun D proto-oncogene 84420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16263 KAAG1 kidney associated antigen 1 42812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16264 KATNA1 katanin p60 (ATPase-containing) subunit A 1 339584 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16265 KATNB1 katanin p80 (WD repeat containing) subunit B 1 412108 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16266 KAZALD1 Kazal-type serine peptidase inhibitor domain 1 151704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16267 KCMF1 potassium channel modulatory factor 1 258496 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16268 KCNE2 potassium voltage-gated channel, Isk-related family, member 2 84224 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16269 KCNE3 potassium voltage-gated channel, Isk-related family, member 3 64904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16270 KCNG2 potassium voltage-gated channel, subfamily G, member 2 188076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16271 KCNK12 potassium channel, subfamily K, member 12 112752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16272 KCNK15 potassium channel, subfamily K, member 15 158528 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16273 KCNK4 potassium channel, subfamily K, member 4 194680 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16274 KCNK7 potassium channel, subfamily K, member 7 168196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16275 KCNMB3 potassium large conductance calcium-activated channel, subfamily M beta member 3 215796 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16276 KCNN4 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 278320 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16277 KCNS1 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 229728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16278 KCTD15 potassium channel tetramerisation domain containing 15 118636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16279 KCTD17 potassium channel tetramerisation domain containing 17 134424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16280 KCTD2 potassium channel tetramerisation domain containing 2 136724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16281 KCTD5 potassium channel tetramerisation domain containing 5 125720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16282 KDM4B 593160 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16283 KIAA0101 KIAA0101 84448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16284 KIAA0174 KIAA0174 250656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16285 KIAA0247 KIAA0247 204148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16286 KIAA0831 KIAA0831 331912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16287 KIAA0892 KIAA0892 420168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16288 KIAA1012 KIAA1012 983164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16289 KIAA1191 KIAA1191 211904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16290 KIAA1522 KIAA1522 663796 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16291 KIAA1529 KIAA1529 1134712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16292 KIAA1737 KIAA1737 269808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16293 KIAA1984 KIAA1984 322036 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16294 KIAA2013 KIAA2013 278404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16295 KIFC1 kinesin family member C1 460180 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16296 KIFC2 kinesin family member C2 394088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16297 KIR2DS4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4 178116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16298 KISS1R KISS1 receptor 91496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16299 KLC3 kinesin light chain 3 231640 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16300 KLF15 Kruppel-like factor 15 221808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16301 KLF9 Kruppel-like factor 9 158536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16302 KLHDC10 277536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16303 KLHDC4 kelch domain containing 4 340836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16304 KLHDC8A kelch domain containing 8A 231028 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16305 KLHDC8B kelch domain containing 8B 242956 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16306 KLHDC9 kelch domain containing 9 221904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16307 KLHL17 kelch-like 17 (Drosophila) 259700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16308 KLHL21 kelch-like 21 (Drosophila) 192696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16309 KLHL22 kelch-like 22 (Drosophila) 407484 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16310 KLHL26 kelch-like 26 (Drosophila) 281708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16311 KLHL30 kelch-like 30 (Drosophila) 202820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16312 KLHL35 164696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16313 KLHL36 328048 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16314 KLK10 kallikrein-related peptidase 10 177396 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16315 KLK3 kallikrein-related peptidase 3 201824 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16316 KLK8 kallikrein-related peptidase 8 210112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16317 KLRC1 killer cell lectin-like receptor subfamily C, member 1 162624 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16318 KLRC2 killer cell lectin-like receptor subfamily C, member 2 161280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16319 KLRG1 killer cell lectin-like receptor subfamily G, member 1 132160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16320 KNCN kinocilin 49308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16321 KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 156904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16322 KPTN kaptin (actin binding protein) 266600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16323 KRT39 keratin 39 132352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16324 KRT40 keratin 40 116512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16325 KRT86 keratin 86 226744 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16326 KRTAP1-1 keratin associated protein 1-1 47344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16327 KRTAP1-3 keratin associated protein 1-3 44704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16328 KRTAP1-5 keratin associated protein 1-5 46552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16329 KRTAP10-1 keratin associated protein 10-1 183428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16330 KRTAP10-10 keratin associated protein 10-10 170240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16331 KRTAP10-2 keratin associated protein 10-2 172928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16332 KRTAP10-3 keratin associated protein 10-3 150080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16333 KRTAP10-5 keratin associated protein 10-5 183680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16334 KRTAP12-2 keratin associated protein 12-2 99680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16335 KRTAP12-3 keratin associated protein 12-3 66080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16336 KRTAP12-4 keratin associated protein 12-4 76832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16337 KRTAP13-2 keratin associated protein 13-2 119168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16338 KRTAP13-4 keratin associated protein 13-4 109088 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16339 KRTAP19-7 keratin associated protein 19-7 43904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16340 KRTAP19-8 keratin associated protein 19-8 43904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16341 KRTAP20-1 keratin associated protein 20-1 39200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16342 KRTAP20-2 keratin associated protein 20-2 45248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16343 KRTAP21-1 keratin associated protein 21-1 54656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16344 KRTAP21-2 keratin associated protein 21-2 57344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16345 KRTAP23-1 keratin associated protein 23-1 45248 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16346 KRTAP3-1 keratin associated protein 3-1 26488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16347 KRTAP3-2 keratin associated protein 3-2 26488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16348 KRTAP3-3 keratin associated protein 3-3 26488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16349 KRTAP4-12 keratin associated protein 4-12 53680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16350 KRTAP4-2 keratin associated protein 4-2 92960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16351 KRTAP4-5 keratin associated protein 4-5 122792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16352 KRTAP5-1 keratin associated protein 5-1 187796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16353 KRTAP5-10 keratin associated protein 5-10 135800 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16354 KRTAP5-7 keratin associated protein 5-7 112448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16355 KRTAP5-8 keratin associated protein 5-8 127232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16356 KRTAP6-1 keratin associated protein 6-1 49280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16357 KRTAP6-3 keratin associated protein 6-3 70320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16358 KRTAP9-3 keratin associated protein 9-3 108416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16359 KRTAP9-4 keratin associated protein 9-4 105056 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16360 KRTAP9-8 keratin associated protein 9-8 108416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16361 KRTAP9-9 keratin associated protein 9-9 58688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16362 KRTDAP keratinocyte differentiation-associated protein 72576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16363 KTI12 KTI12 homolog, chromatin associated (S. cerevisiae) 229292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16364 KY kyphoscoliosis peptidase 452956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16365 L3MBTL l(3)mbt-like (Drosophila) 525232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16366 LAGE3 L antigen family, member 3 56448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16367 LAMA5 laminin, alpha 5 1760748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16368 LANCL3 LanC lantibiotic synthetase component C-like 3 (bacterial) 167300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16369 LAPTM4B lysosomal associated protein transmembrane 4 beta 162344 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16370 LASS1 LAG1 homolog, ceramide synthase 1 168560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16371 LASS2 LAG1 homolog, ceramide synthase 2 264992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16372 LASS4 LAG1 homolog, ceramide synthase 4 269948 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16373 LCE1C late cornified envelope 1C 80864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16374 LCE1E late cornified envelope 1E 80864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16375 LCE2A late cornified envelope 2A 72800 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16376 LCE2B late cornified envelope 2B 75488 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16377 LCE3A late cornified envelope 3A 61376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16378 LCE3B late cornified envelope 3B 25696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16379 LCE3C late cornified envelope 3C 25432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16380 LCE3E late cornified envelope 3E 63392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16381 LCE5A late cornified envelope 5A 77168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16382 LCN1 lipocalin 1 (tear prealbumin) 124184 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16383 LCN10 lipocalin 10 137184 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16384 LCN12 lipocalin 12 122320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16385 LCN15 124392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16386 LCN2 lipocalin 2 139104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16387 LCN6 lipocalin 6 111916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16388 LCNL1 77664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16389 LCORL ligand dependent nuclear receptor corepressor-like 185248 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16390 LEAP2 liver expressed antimicrobial peptide 2 55104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16391 LECT2 leukocyte cell-derived chemotaxin 2 105728 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16392 LEFTY1 left-right determination factor 1 177184 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16393 LEFTY2 left-right determination factor 2 199444 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16394 LEMD1 LEM domain containing 1 75936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16395 LEMD2 LEM domain containing 2 218232 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16396 LENEP lens epithelial protein 42560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16397 LEPRE1 leucine proline-enriched proteoglycan (leprecan) 1 423136 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16398 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 205896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16399 LGALS13 lectin, galactoside-binding, soluble, 13 (galectin 13) 97664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16400 LGALS2 lectin, galactoside-binding, soluble, 2 92960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16401 LGALS3 lectin, galactoside-binding, soluble, 3 158452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16402 LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein 357532 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16403 LGALS7 lectin, galactoside-binding, soluble, 7 (galectin 7) 27020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16404 LGR6 leucine-rich repeat-containing G protein-coupled receptor 6 667876 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16405 LIF leukemia inhibitory factor (cholinergic differentiation factor) 135888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16406 LIMD1 LIM domains containing 1 436072 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16407 LIMD2 LIM domain containing 2 69860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16408 LIN28A 137984 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16409 LIN52 lin-52 homolog (C. elegans) 84000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16410 LIN7B lin-7 homolog B (C. elegans) 102740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16411 LIN7C lin-7 homolog C (C. elegans) 137536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16412 LINGO3 leucine rich repeat and Ig domain containing 3 203336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16413 LITAF lipopolysaccharide-induced TNF factor 111552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16414 LLPH 89152 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16415 LMAN2L lectin, mannose-binding 2-like 241696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16416 LMBR1L limb region 1 homolog (mouse)-like 344512 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16417 LMF2 lipase maturation factor 2 273644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16418 LMNA lamin A/C 428560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16419 LMO1 LIM domain only 1 (rhombotin 1) 106652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16420 LOC100302652 359072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16421 LOC150786 155204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16422 LOC153328 94896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16423 LOC401052 81760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16424 LOC55908 112288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16425 LOC646498 107744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16426 LOC649330 198464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16427 LOX lysyl oxidase 228732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16428 LOXL1 lysyl oxidase-like 1 189052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16429 LPGAT1 lysophosphatidylglycerol acyltransferase 1 255584 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16430 LPPR1 225344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16431 LPPR2 238952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16432 LRDD leucine-rich repeats and death domain containing 422968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16433 LRFN1 leucine rich repeat and fibronectin type III domain containing 1 341668 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16434 LRFN4 leucine rich repeat and fibronectin type III domain containing 4 180696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16435 LRP3 low density lipoprotein receptor-related protein 3 344596 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16436 LRRC14 leucine rich repeat containing 14 276444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16437 LRRC19 leucine rich repeat containing 19 250628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16438 LRRC24 leucine rich repeat containing 24 131180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16439 LRRC29 leucine rich repeat containing 29 118852 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16440 LRRC3 leucine rich repeat containing 3 148232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16441 LRRC45 leucine rich repeat containing 45 208992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16442 LRRC56 leucine rich repeat containing 56 258220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16443 LRRN4CL 85820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16444 LSM10 LSM10, U7 small nuclear RNA associated 82292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16445 LSM6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 57120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16446 LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) 62700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16447 LSMD1 LSM domain containing 1 96124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16448 LTA lymphotoxin alpha (TNF superfamily, member 1) 123228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16449 LTA4H leukotriene A4 hydrolase 428288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16450 LTB4R2 leukotriene B4 receptor 2 181776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16451 LTC4S leukotriene C4 synthase 41608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16452 LUC7L LUC7-like (S. cerevisiae) 245280 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16453 LXN latexin 155232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16454 LY6G5B lymphocyte antigen 6 complex, locus G5B 98868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16455 LY6G6D lymphocyte antigen 6 complex, locus G6D 77112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16456 LY6H lymphocyte antigen 6 complex, locus H 82292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16457 LYL1 lymphoblastic leukemia derived sequence 1 84832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16458 LYNX1 Ly6/neurotoxin 1 144428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16459 LYPD1 LY6/PLAUR domain containing 1 98112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16460 LYPLA1 lysophospholipase I 154644 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16461 LYPLA2 lysophospholipase II 163548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16462 LYRM1 LYR motif containing 1 85344 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16463 LYRM4 LYR motif containing 4 52272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16464 LYRM7 Lyrm7 homolog (mouse) 67696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16465 LYSMD2 LysM, putative peptidoglycan-binding, domain containing 2 85792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16466 LYZ lysozyme (renal amyloidosis) 103712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16467 LYZL1 lysozyme-like 1 135520 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16468 LYZL4 lysozyme-like 4 94480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16469 MAD2L1BP MAD2L1 binding protein 167596 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16470 MADCAM1 mucosal vascular addressin cell adhesion molecule 1 115836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16471 MAF1 MAF1 homolog (S. cerevisiae) 170700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16472 MAFF v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian) 37660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16473 MAFG v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) 28072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16474 MAFK v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian) 53200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16475 MAGEA1 melanoma antigen family A, 1 (directs expression of antigen MZ2-E) 209216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16476 MAGOH mago-nashi homolog, proliferation-associated (Drosophila) 103264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16477 MAGT1 magnesium transporter 1 93104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16478 MAL2 mal, T-cell differentiation protein 2 92064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16479 MAMDC4 MAM domain containing 4 467740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16480 MAMSTR 160696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16481 MANEA mannosidase, endo-alpha 308840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16482 MANEAL mannosidase, endo-alpha-like 213588 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16483 MANF 103516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16484 MAP1D 228768 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16485 MAP1LC3A microtubule-associated protein 1 light chain 3 alpha 88172 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16486 MAP1LC3B microtubule-associated protein 1 light chain 3 beta 78400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16487 MAP2K7 mitogen-activated protein kinase kinase 7 186144 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16488 MAP6D1 MAP6 domain containing 1 34808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16489 MAPK11 mitogen-activated protein kinase 11 156076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16490 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1-like 168000 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16491 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 267488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16492 MAPKSP1 89376 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16493 MAPRE1 microtubule-associated protein, RP/EB family, member 1 186144 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16494 MARCH3 membrane-associated ring finger (C3HC4) 3 174272 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16495 MARCH4 membrane-associated ring finger (C3HC4) 4 255304 0 0 0 5 0 0 0 0 0 0 1.00 1.00 -16496 MAZ MYC-associated zinc finger protein (purine-binding transcription factor) 122724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16497 MB myoglobin 106848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16498 MBL2 mannose-binding lectin (protein C) 2, soluble (opsonic defect) 170912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16499 MBLAC2 152420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16500 MBTD1 mbt domain containing 1 277760 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16501 MBTPS2 membrane-bound transcription factor peptidase, site 2 348552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16502 MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 203924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16503 MCART2 mitochondrial carrier triple repeat 2 201152 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16504 MCCD1 mitochondrial coiled-coil domain 1 41580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16505 MCL1 myeloid cell leukemia sequence 1 (BCL2-related) 176960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16506 MCM2 minichromosome maintenance complex component 2 616980 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16507 MDFI MyoD family inhibitor 150304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16508 MDK midkine (neurite growth-promoting factor 2) 73948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16509 MED10 mediator complex subunit 10 94976 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16510 MED11 mediator complex subunit 11 81984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16511 MED19 mediator complex subunit 19 85120 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16512 MED20 mediator complex subunit 20 146720 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16513 MED21 mediator complex subunit 21 101024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16514 MED26 mediator complex subunit 26 353500 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16515 MED28 mediator complex subunit 28 123872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16516 MED29 mediator complex subunit 29 146384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16517 MED30 mediator complex subunit 30 117572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16518 MED6 mediator complex subunit 6 173152 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16519 MEF2B myocyte enhancer factor 2B 176288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16520 MEIG1 meiosis expressed gene 1 homolog (mouse) 61600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16521 MEOX2 mesenchyme homeobox 2 196392 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16522 MESDC1 mesoderm development candidate 1 110264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16523 MESP1 mesoderm posterior 1 homolog (mouse) 48552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16524 MESP2 mesoderm posterior 2 homolog (mouse) 100408 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16525 METTL11A 153216 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16526 METTL2A methyltransferase like 2A 167280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16527 METTL4 methyltransferase like 4 321160 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16528 METTL9 methyltransferase like 9 180992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16529 MFAP1 microfibrillar-associated protein 1 303744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16530 MFAP2 microfibrillar-associated protein 2 111372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16531 MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 213528 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16532 MFSD3 major facilitator superfamily domain containing 3 117180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16533 MFSD6L 382760 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16534 MFSD7 major facilitator superfamily domain containing 7 284704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16535 MGAT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 284228 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16536 MGP matrix Gla protein 73472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16537 MGST2 microsomal glutathione S-transferase 2 103936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16538 MIB2 mindbomb homolog 2 (Drosophila) 412524 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16539 MICALL2 MICAL-like 2 377792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16540 MIDN midnolin 204484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16541 MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) 21928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16542 MINK1 misshapen-like kinase 1 (zebrafish) 694240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16543 MIXL1 Mix1 homeobox-like 1 (Xenopus laevis) 95900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16544 MKI67IP MKI67 (FHA domain) interacting nucleolar phosphoprotein 203840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16545 MLN motilin 76096 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16546 MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria 193760 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16547 MMGT1 80208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16548 MMP28 matrix metallopeptidase 28 249356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16549 MNX1 motor neuron and pancreas homeobox 1 98280 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16550 MOB2 148920 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16551 MOBKL2B MOB1, Mps One Binder kinase activator-like 2B (yeast) 148512 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16552 MOBP myelin-associated oligodendrocyte basic protein 56896 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16553 MOCS1 molybdenum cofactor synthesis 1 242508 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16554 MOCS2 molybdenum cofactor synthesis 2 163888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16555 MON1A MON1 homolog A (yeast) 372708 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16556 MORF4 mortality factor 4 159488 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16557 MOSC1 MOCO sulphurase C-terminal domain containing 1 181412 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16558 MOSC2 MOCO sulphurase C-terminal domain containing 2 195160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16559 MPG N-methylpurine-DNA glycosylase 161616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16560 MPHOSPH6 M-phase phosphoprotein 6 111244 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16561 MPST mercaptopyruvate sulfurtransferase 114744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16562 MPV17 MpV17 mitochondrial inner membrane protein 125216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16563 MPZ myelin protein zero (Charcot-Marie-Tooth neuropathy 1B) 163048 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16564 MRFAP1 Mof4 family associated protein 1 86744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16565 MRFAP1L1 Morf4 family associated protein 1-like 1 86912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16566 MRGPRF MAS-related GPR, member F 130432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16567 MRO maestro 172704 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16568 MRP63 mitochondrial ribosomal protein 63 56420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16569 MRPL11 mitochondrial ribosomal protein L11 140756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16570 MRPL12 mitochondrial ribosomal protein L12 120736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16571 MRPL14 mitochondrial ribosomal protein L14 99904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16572 MRPL15 mitochondrial ribosomal protein L15 188832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16573 MRPL17 mitochondrial ribosomal protein L17 120960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16574 MRPL23 mitochondrial ribosomal protein L23 98560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16575 MRPL28 mitochondrial ribosomal protein L28 162288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16576 MRPL30 mitochondrial ribosomal protein L30 113344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16577 MRPL34 mitochondrial ribosomal protein L34 39676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16578 MRPL35 mitochondrial ribosomal protein L35 131712 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16579 MRPL36 mitochondrial ribosomal protein L36 70784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16580 MRPL38 mitochondrial ribosomal protein L38 207016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16581 MRPL40 mitochondrial ribosomal protein L40 129920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16582 MRPL41 mitochondrial ribosomal protein L41 65240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16583 MRPL42 mitochondrial ribosomal protein L42 100576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16584 MRPL43 mitochondrial ribosomal protein L43 186508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16585 MRPL48 mitochondrial ribosomal protein L48 126368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16586 MRPL49 mitochondrial ribosomal protein L49 115808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16587 MRPL52 mitochondrial ribosomal protein L52 87808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16588 MRPL54 mitochondrial ribosomal protein L54 88284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16589 MRPL55 mitochondrial ribosomal protein L55 83328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16590 MRPS10 mitochondrial ribosomal protein S10 141092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16591 MRPS12 mitochondrial ribosomal protein S12 95200 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16592 MRPS16 mitochondrial ribosomal protein S16 93996 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16593 MRPS17 mitochondrial ribosomal protein S17 89824 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16594 MRPS18A mitochondrial ribosomal protein S18A 121984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16595 MRPS23 mitochondrial ribosomal protein S23 132748 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16596 MRPS26 mitochondrial ribosomal protein S26 77364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16597 MRPS33 mitochondrial ribosomal protein S33 73696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16598 MRPS34 mitochondrial ribosomal protein S34 52612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16599 MRPS35 mitochondrial ribosomal protein S35 224896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16600 MRPS7 mitochondrial ribosomal protein S7 166684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16601 MRTO4 mRNA turnover 4 homolog (S. cerevisiae) 163920 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16602 MS4A3 membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) 149856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16603 MS4A6A membrane-spanning 4-domains, subfamily A, member 6A 174944 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16604 MS4A6E membrane-spanning 4-domains, subfamily A, member 6E 102144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16605 MSGN1 mesogenin 1 131264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16606 MSLN mesothelin 265888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16607 MSLNL 437460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16608 MSMB microseminoprotein, beta- 80864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16609 MSMP 96768 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16610 MSRA methionine sulfoxide reductase A 162792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16611 MSTO1 misato homolog 1 (Drosophila) 317604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16612 MSX1 msh homeobox 1 100940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16613 MT1A metallothionein 1A 44352 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16614 MT1E metallothionein 1E 44352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16615 MT1F metallothionein 1F 44352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16616 MT1H metallothionein 1H 44352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16617 MT1M metallothionein 1M 44352 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16618 MT1X metallothionein 1X 44352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16619 MT2A metallothionein 2A 44352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16620 MT4 metallothionein 4 45024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16621 MTCP1NB 48160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16622 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 243040 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16623 MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 203392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16624 MTIF3 mitochondrial translational initiation factor 3 190176 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16625 MTNR1A melatonin receptor 1A 208928 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16626 MTP18 130592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16627 MTPN myotrophin 83552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16628 MTSS1L 340200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16629 MUC1 mucin 1, cell surface associated 160152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16630 MUCL1 mucin-like 1 64736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16631 MUSTN1 musculoskeletal, embryonic nuclear protein 1 56560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16632 MUTED muted homolog (mouse) 130816 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16633 MVD mevalonate (diphospho) decarboxylase 207640 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16634 MXD3 MAX dimerization protein 3 100544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16635 MXD4 MAX dimerization protein 4 105084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16636 MXRA8 matrix-remodelling associated 8 131900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16637 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 288960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16638 MYEOV2 myeloma overexpressed 2 156772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16639 MYL12A 118272 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16640 MYL12B 118944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16641 MYL3 myosin, light chain 3, alkali; ventricular, skeletal, slow 137088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16642 MYL5 myosin, light chain 5, regulatory 110516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16643 MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 114912 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16644 MYLIP myosin regulatory light chain interacting protein 295784 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16645 MYLK4 myosin light chain kinase family, member 4 271264 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16646 MYLPF 120512 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16647 MYOD1 myogenic differentiation 1 145576 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16648 NAA10 160160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16649 NAA20 125580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16650 NAA40 167104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16651 NACC2 130088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16652 NANOS3 nanos homolog 3 (Drosophila) 118664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16653 NANP N-acetylneuraminic acid phosphatase 167692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16654 NAP1L5 nucleosome assembly protein 1-like 5 120428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16655 NAPRT1 nicotinate phosphoribosyltransferase domain containing 1 187180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16656 NASP nuclear autoantigenic sperm protein (histone-binding) 550424 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16657 NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase) 197792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16658 NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) 193592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16659 NAT6 N-acetyltransferase 6 191212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16660 NAT8 N-acetyltransferase 8 154112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16661 NAT8L N-acetyltransferase 8-like 58380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16662 NBL1 neuroblastoma, suppression of tumorigenicity 1 129064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16663 NBPF14 neuroblastoma breakpoint family, member 14 424824 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16664 NCALD neurocalcin delta 133056 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16665 NCAPH2 non-SMC condensin II complex, subunit H2 357860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16666 NCCRP1 114464 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16667 NCK2 NCK adaptor protein 2 240576 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16668 NCLN nicalin homolog (zebrafish) 254980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16669 NCR2 natural cytotoxicity triggering receptor 2 190624 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16670 NDE1 nudE nuclear distribution gene E homolog 1 (A. nidulans) 232960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16671 NDFIP2 Nedd4 family interacting protein 2 173752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16672 NDOR1 NADPH dependent diflavin oxidoreductase 1 333692 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16673 NDP Norrie disease (pseudoglioma) 79736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16674 NDUFA11 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 68000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16675 NDUFA2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa 66360 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16676 NDUFA3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa 60704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16677 NDUFA4L2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 50072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16678 NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa 83104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16679 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa 95760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16680 NDUFA7 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa 68292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16681 NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa 119840 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16682 NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 94472 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16683 NDUFB10 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa 103496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16684 NDUFB4 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa 36256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16685 NDUFB5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa 133056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16686 NDUFB7 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa 79732 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16687 NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 130144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16688 NDUFC1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 40024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16689 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) 123768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16690 NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) 122388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16691 NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 167636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16692 NECAP1 NECAP endocytosis associated 1 192640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16693 NELF nasal embryonic LHRH factor 213048 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16694 NEU4 sialidase 4 209300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16695 NEUROG1 neurogenin 1 124040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16696 NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 203840 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16697 NFKBIL1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 141344 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16698 NFKBIL2 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 594688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16699 NHEDC2 Na+/H+ exchanger domain containing 2 371392 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16700 NHLH2 nescient helix loop helix 2 64064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16701 NHLRC4 64316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16702 NHP2 106820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16703 NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 90944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16704 NKAIN1 Na+/K+ transporting ATPase interacting 1 103552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16705 NKAIN4 Na+/K+ transporting ATPase interacting 4 89376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16706 NKPD1 NTPase, KAP family P-loop domain containing 1 201460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16707 NKX2-1 NK2 homeobox 1 154416 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16708 NKX2-3 NK2 transcription factor related, locus 3 (Drosophila) 110280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16709 NKX2-4 NK2 homeobox 4 69868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16710 NKX2-8 NK2 homeobox 8 67984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16711 NKX6-2 NK6 homeobox 2 70980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16712 NKX6-3 NK6 homeobox 3 47768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16713 NMB neuromedin B 97576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16714 NMBR neuromedin B receptor 265440 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16715 NME1 non-metastatic cells 1, protein (NM23A) expressed in 124096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16716 NME2 non-metastatic cells 2, protein (NM23B) expressed in 106400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16717 NME3 non-metastatic cells 3, protein expressed in 55020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16718 NME4 non-metastatic cells 4, protein expressed in 95340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16719 NNAT neuronatin 57792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16720 NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) 285464 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16721 NOG noggin 145836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16722 NOL12 nucleolar protein 12 132872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16723 NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain) 113092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16724 NOP10 45472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16725 NOP16 124768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16726 NOSIP nitric oxide synthase interacting protein 208264 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16727 NOTCH1 Notch homolog 1, translocation-associated (Drosophila) 1140524 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16728 NOTUM notum pectinacetylesterase homolog (Drosophila) 159268 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16729 NOXO1 NADPH oxidase organizer 1 122864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16730 NPBWR2 neuropeptides B/W receptor 2 167972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16731 NPFF neuropeptide FF-amide peptide precursor 79296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16732 NPFFR1 neuropeptide FF receptor 1 106368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16733 NPIP nuclear pore complex interacting protein 86128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16734 NPM2 nucleophosmin/nucleoplasmin, 2 144984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16735 NPPC natriuretic peptide precursor C 53172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16736 NPRL2 265888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16737 NPS neuropeptide S 63168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16738 NPW neuropeptide W 36820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16739 NR0B2 nuclear receptor subfamily 0, group B, member 2 173236 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16740 NR1H2 nuclear receptor subfamily 1, group H, member 2 269156 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16741 NR2C2AP nuclear receptor 2C2-associated protein 98560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16742 NR5A1 nuclear receptor subfamily 5, group A, member 1 228064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16743 NRARP 46480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16744 NRGN neurogranin (protein kinase C substrate, RC3) 23660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16745 NRIP2 nuclear receptor interacting protein 2 194880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16746 NRL neural retina leucine zipper 78876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16747 NRN1 neuritin 1 98784 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16748 NRTN neurturin 46732 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16749 NSA2 180768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16750 NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 172032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16751 NT5C 5', 3'-nucleotidase, cytosolic 100352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16752 NT5DC2 5'-nucleotidase domain containing 2 325276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16753 NTF4 neurotrophin 4 91288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16754 NTN3 183624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16755 NTN5 179320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16756 NUBP2 nucleotide binding protein 2 (MinD homolog, E. coli) 124240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16757 NUBPL nucleotide binding protein-like 224896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16758 NUDCD2 NudC domain containing 2 109760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16759 NUDT10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 112536 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16760 NUDT11 nudix (nucleoside diphosphate linked moiety X)-type motif 11 111680 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16761 NUDT14 nudix (nucleoside diphosphate linked moiety X)-type motif 14 84560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16762 NUDT18 nudix (nucleoside diphosphate linked moiety X)-type motif 18 148928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16763 NUDT2 nudix (nucleoside diphosphate linked moiety X)-type motif 2 101248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16764 NUDT22 nudix (nucleoside diphosphate linked moiety X)-type motif 22 163744 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16765 NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 115864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16766 NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4 90032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16767 NUDT5 nudix (nucleoside diphosphate linked moiety X)-type motif 5 155904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16768 NUDT8 nudix (nucleoside diphosphate linked moiety X)-type motif 8 57820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16769 NUP50 nucleoporin 50kDa 321440 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16770 NUP62CL nucleoporin 62kDa C-terminal like 129696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16771 NUSAP1 nucleolar and spindle associated protein 1 288520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16772 NXNL2 nucleoredoxin-like 2 50652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16773 NXPH4 neurexophilin 4 149044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16774 OAF OAF homolog (Drosophila) 126476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16775 OAZ1 ornithine decarboxylase antizyme 1 111604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16776 OBFC2B oligonucleotide/oligosaccharide-binding fold containing 2B 147840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16777 OCEL1 occludin/ELL domain containing 1 167692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16778 OCIAD2 OCIA domain containing 2 109536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16779 OCLM oculomedin 31136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16780 OCM2 77504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16781 ODF3B 65100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16782 ODF3L1 outer dense fiber of sperm tails 3-like 1 188384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16783 OGFOD2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 156324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16784 OGFR opioid growth factor receptor 243828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16785 OIP5 Opa interacting protein 5 156436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16786 OLIG2 oligodendrocyte lineage transcription factor 2 68320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16787 ONECUT2 one cut homeobox 2 252336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16788 OPLAH 5-oxoprolinase (ATP-hydrolysing) 541340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16789 OPN1MW opsin 1 (cone pigments), medium-wave-sensitive 159688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16790 OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 159688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16791 OPRL1 opiate receptor-like 1 223188 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16792 OR10A5 olfactory receptor, family 10, subfamily A, member 5 214592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16793 OR10A7 olfactory receptor, family 10, subfamily A, member 7 213920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16794 OR10H3 olfactory receptor, family 10, subfamily H, member 3 213920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16795 OR11A1 olfactory receptor, family 11, subfamily A, member 1 133280 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16796 OR1D2 olfactory receptor, family 1, subfamily D, member 2 211008 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16797 OR1D4 olfactory receptor, family 1, subfamily D, member 4 198744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16798 OR1D5 olfactory receptor, family 1, subfamily D, member 5 197624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16799 OR1Q1 olfactory receptor, family 1, subfamily Q, member 1 212576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16800 OR1S1 olfactory receptor, family 1, subfamily S, member 1 219968 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16801 OR2A42 olfactory receptor, family 2, subfamily A, member 42 168364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16802 OR2B3 211904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16803 OR2S2 olfactory receptor, family 2, subfamily S, member 2 211456 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16804 OR2T29 olfactory receptor, family 2, subfamily T, member 29 54824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16805 OR2T3 olfactory receptor, family 2, subfamily T, member 3 215264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16806 OR2T5 olfactory receptor, family 2, subfamily T, member 5 74312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16807 OR2V2 olfactory receptor, family 2, subfamily V, member 2 213248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16808 OR3A2 olfactory receptor, family 3, subfamily A, member 2 209720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16809 OR4D2 olfactory receptor, family 4, subfamily D, member 2 207872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16810 OR4E2 olfactory receptor, family 4, subfamily E, member 2 211904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16811 OR4F17 olfactory receptor, family 4, subfamily F, member 17 73220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16812 OR4F21 olfactory receptor, family 4, subfamily F, member 21 65864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16813 OR4F4 olfactory receptor, family 4, subfamily F, member 4 85064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16814 OR4F5 olfactory receptor, family 4, subfamily F, member 5 126784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16815 OR4N5 olfactory receptor, family 4, subfamily N, member 5 208544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16816 OR4Q3 olfactory receptor, family 4, subfamily Q, member 3 211904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16817 OR51D1 olfactory receptor, family 51, subfamily D, member 1 219296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16818 OR52A4 olfactory receptor, family 52, subfamily A, member 4 205856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16819 OR52B6 olfactory receptor, family 52, subfamily B, member 6 226688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16820 OR52E2 olfactory receptor, family 52, subfamily E, member 2 219744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16821 OR52L1 olfactory receptor, family 52, subfamily L, member 1 222656 0 0 0 6 0 0 0 0 0 0 1.00 1.00 -16822 OR56B4 olfactory receptor, family 56, subfamily B, member 4 215936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16823 OR5A1 olfactory receptor, family 5, subfamily A, member 1 213248 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16824 OR6C1 olfactory receptor, family 6, subfamily C, member 1 211232 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -16825 OR8A1 olfactory receptor, family 8, subfamily A, member 1 220640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16826 OR8D1 olfactory receptor, family 8, subfamily D, member 1 208544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16827 OR8G1 olfactory receptor, family 8, subfamily G, member 1 209888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16828 OR8G5 olfactory receptor, family 8, subfamily G, member 5 234080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16829 OR8U1 olfactory receptor, family 8, subfamily U, member 1 209216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16830 OR8U8 olfactory receptor, family 8, subfamily U, member 8 192864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16831 OR9G1 olfactory receptor, family 9, subfamily G, member 1 206528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16832 OR9G9 olfactory receptor, family 9, subfamily G, member 9 206528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16833 OR9Q1 olfactory receptor, family 9, subfamily Q, member 1 209888 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16834 ORAI2 ORAI calcium release-activated calcium modulator 2 157388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16835 ORC2L origin recognition complex, subunit 2-like (yeast) 402752 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16836 ORC6L origin recognition complex, subunit 6 like (yeast) 170492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16837 ORM2 orosomucoid 2 140272 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16838 ORMDL1 ORM1-like 1 (S. cerevisiae) 106176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16839 ORMDL2 ORM1-like 2 (S. cerevisiae) 106176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16840 ORMDL3 ORM1-like 3 (S. cerevisiae) 106176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16841 OSBP2 oxysterol binding protein 2 532068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16842 OSCAR osteoclast associated, immunoglobulin-like receptor 153984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16843 OSR1 odd-skipped related 1 (Drosophila) 181216 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16844 OSR2 odd-skipped related 2 (Drosophila) 192416 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16845 OSTBETA 75640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16846 OSTF1 osteoclast stimulating factor 1 153440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16847 OSTM1 osteopetrosis associated transmembrane protein 1 167692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16848 OTOR otoraplin 90272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16849 OVOL1 ovo-like 1(Drosophila) 149212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16850 OXT oxytocin, prepro- (neurophysin I) 50260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16851 P2RX6 purinergic receptor P2X, ligand-gated ion channel, 6 247700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16852 P2RY11 purinergic receptor P2Y, G-protein coupled, 11 231448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16853 PABPN1L 95280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16854 PACRGL 155456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16855 PACS2 phosphofurin acidic cluster sorting protein 2 502484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16856 PADI2 peptidyl arginine deiminase, type II 438052 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16857 PAEP progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial alpha-2-globulin, alpha uterine protein) 106880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16858 PAFAH1B2 platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa 159040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16859 PAGE2B P antigen family, member 2B 73056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16860 PAGE4 P antigen family, member 4 (prostate associated) 60288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16861 PAGE5 P antigen family, member 5 (prostate associated) 80544 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16862 PAK4 p21(CDKN1A)-activated kinase 4 271204 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16863 PALM paralemmin 193208 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16864 PALM2 paralemmin 2 283360 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16865 PANK2 pantothenate kinase 2 (Hallervorden-Spatz syndrome) 319172 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16866 PAQR5 progestin and adipoQ receptor family member V 228704 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16867 PAQR6 progestin and adipoQ receptor family member VI 266432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16868 PARD6B par-6 partitioning defective 6 homolog beta (C. elegans) 237664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16869 PARM1 212032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16870 PARS2 prolyl-tRNA synthetase 2, mitochondrial (putative) 320264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16871 PATE1 89824 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16872 PAX5 paired box 5 259352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16873 PAX8 paired box 8 292812 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16874 PBOV1 prostate and breast cancer overexpressed 1 83856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16875 PBX2 pre-B-cell leukemia homeobox 2 222988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16876 PBX4 pre-B-cell leukemia homeobox 4 227160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16877 PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha 72576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16878 PCBD2 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 71904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16879 PCBP3 poly(rC) binding protein 3 231080 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16880 PCBP4 poly(rC) binding protein 4 269032 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16881 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 247744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16882 PCOTH 82432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16883 PCP4 Purkinje cell protein 4 45024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16884 PCSK4 proprotein convertase subtilisin/kexin type 4 349032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16885 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 212140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16886 PDCD1 programmed cell death 1 186956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16887 PDCD10 programmed cell death 10 149408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16888 PDCD2 programmed cell death 2 194264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16889 PDCL2 phosducin-like 2 166912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16890 PDDC1 Parkinson disease 7 domain containing 1 121908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16891 PDE2A phosphodiesterase 2A, cGMP-stimulated 564268 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16892 PDE6G phosphodiesterase 6G, cGMP-specific, rod, gamma 61824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16893 PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma 59136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16894 PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) 159572 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16895 PDIA2 protein disulfide isomerase family A, member 2 279272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16896 PDX1 pancreatic and duodenal homeobox 1 81004 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16897 PDXK pyridoxal (pyridoxine, vitamin B6) kinase 199808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16898 PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase 89908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16899 PDZD4 PDZ domain containing 4 368760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16900 PDZD9 132608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16901 PDZK1IP1 PDZK1 interacting protein 1 76748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16902 PEBP1 phosphatidylethanolamine binding protein 1 98784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16903 PEBP4 158456 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16904 PECR peroxisomal trans-2-enoyl-CoA reductase 206416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16905 PEF1 penta-EF-hand domain containing 1 195916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16906 PENK proenkephalin 178192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16907 PEPD peptidase D 291108 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16908 PERP PERP, TP53 apoptosis effector 114744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16909 PES1 pescadillo homolog 1, containing BRCT domain (zebrafish) 382844 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16910 PEX10 peroxisome biogenesis factor 10 186284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16911 PEX11G peroxisomal biogenesis factor 11 gamma 109312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16912 PEX2 206528 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16913 PEX7 peroxisomal biogenesis factor 7 196672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16914 PF4 platelet factor 4 (chemokine (C-X-C motif) ligand 4) 58312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16915 PF4V1 platelet factor 4 variant 1 73248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16916 PFDN2 prefoldin subunit 2 106988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16917 PFDN4 prefoldin subunit 4 90224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16918 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 368256 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16919 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 353592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16920 PFN1 profilin 1 97440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16921 PFN3 profilin 3 43540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16922 PGAM4 phosphoglycerate mutase family member 4 67672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16923 PGLS 6-phosphogluconolactonase 111896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16924 PGM2 phosphoglucomutase 2 405880 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16925 PGP phosphoglycolate phosphatase 89068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16926 PGPEP1 pyroglutamyl-peptidase I 142408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16927 PGRMC1 progesterone receptor membrane component 1 117424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16928 PGRMC2 progesterone receptor membrane component 2 105196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16929 PHB2 prohibitin 2 201684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16930 PHF13 PHD finger protein 13 201656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16931 PHF21B PHD finger protein 21B 297520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16932 PHKG1 phosphorylase kinase, gamma 1 (muscle) 262668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16933 PHLDA2 pleckstrin homology-like domain, family A, member 2 46620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16934 PHLDA3 pleckstrin homology-like domain, family A, member 3 69608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16935 PHLDB3 pleckstrin homology-like domain, family B, member 3 369736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16936 PHOSPHO1 phosphatase, orphan 1 95856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16937 PIGC phosphatidylinositol glycan anchor biosynthesis, class C 201152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16938 PIGF phosphatidylinositol glycan anchor biosynthesis, class F 163488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16939 PIGH phosphatidylinositol glycan anchor biosynthesis, class H 96716 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16940 PIGL phosphatidylinositol glycan anchor biosynthesis, class L 176288 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16941 PIGP phosphatidylinositol glycan anchor biosynthesis, class P 110432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16942 PIGY phosphatidylinositol glycan anchor biosynthesis, class Y 49280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16943 PIGZ phosphatidylinositol glycan anchor biosynthesis, class Z 373436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16944 PIM3 pim-3 oncogene 89964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16945 PIN4 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 109088 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16946 PIP5KL1 phosphatidylinositol-4-phosphate 5-kinase-like 1 155912 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16947 PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 627964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16948 PITX3 paired-like homeodomain 3 89860 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16949 PKD1 polycystic kidney disease 1 (autosomal dominant) 1475760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16950 PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma 53536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16951 PKLR pyruvate kinase, liver and RBC 398552 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -16952 PKNOX1 PBX/knotted 1 homeobox 1 302624 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16953 PKP3 plakophilin 3 249732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16954 PLA2G10 phospholipase A2, group X 32928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16955 PLA2G12A phospholipase A2, group XIIA 129088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16956 PLA2G12B phospholipase A2, group XIIB 135296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16957 PLA2G16 113120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16958 PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 100480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16959 PLA2G2C phospholipase A2, group IIC 104160 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16960 PLA2G2D phospholipase A2, group IID 101696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16961 PLA2G2E phospholipase A2, group IIE 93696 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16962 PLA2G3 phospholipase A2, group III 322416 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16963 PLA2G4B phospholipase A2, group IVB (cytosolic) 534964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16964 PLA2G5 phospholipase A2, group V 96992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16965 PLAC1L placenta-specific 1-like 110432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16966 PLAC9 placenta-specific 9 52168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16967 PLAGL2 pleiomorphic adenoma gene-like 2 335776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16968 PLD6 76244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16969 PLEKHF1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 106484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16970 PLEKHG5 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 543736 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16971 PLEKHJ1 pleckstrin homology domain containing, family J member 1 54376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16972 PLEKHN1 pleckstrin homology domain containing, family N member 1 304628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16973 PLGLB1 plasminogen-like B1 48384 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16974 PLIN3 297752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16975 PLIN5 183204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16976 PLLP plasma membrane proteolipid (plasmolipin) 106064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16977 PLP2 proteolipid protein 2 (colonic epithelium-enriched) 107296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16978 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 24864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16979 PMM2 phosphomannomutase 2 171444 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16980 PNKD paroxysmal nonkinesigenic dyskinesia 294808 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16981 PNMA1 paraneoplastic antigen MA1 237356 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16982 PNMT phenylethanolamine N-methyltransferase 160216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16983 PNOC prepronociceptin 120736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16984 PNPLA2 patatin-like phospholipase domain containing 2 193564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16985 PNRC2 proline-rich nuclear receptor coactivator 2 63696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16986 POLD4 polymerase (DNA-directed), delta 4 76160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16987 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 48440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16988 POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa 192024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16989 POLR2F polymerase (RNA) II (DNA directed) polypeptide F 90496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16990 POLR2G polymerase (RNA) II (DNA directed) polypeptide G 123424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16991 POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa 68012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16992 POLR2J2 68712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16993 POLR2L polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa 33292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16994 POLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa 221088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16995 POLR3G polymerase (RNA) III (DNA directed) polypeptide G (32kD) 156800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16996 POMZP3 POM (POM121 homolog, rat) and ZP3 fusion 132384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16997 POP4 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) 148736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16998 POP7 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) 95648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16999 POR P450 (cytochrome) oxidoreductase 325052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17000 POTEH 142380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17001 POU2AF1 POU class 2 associating factor 1 176776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17002 POU3F1 POU class 3 homeobox 1 114772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17003 POU3F3 POU class 3 homeobox 3 145152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17004 POU5F1 POU class 5 homeobox 1 166596 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17005 PPAN peter pan homolog (Drosophila) 261812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17006 PPAP2A phosphatidic acid phosphatase type 2A 218624 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17007 PPAP2C phosphatidic acid phosphatase type 2C 194880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17008 PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B 169272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17009 PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) 89376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17010 PPCDC phosphopantothenoylcysteine decarboxylase 142240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17011 PPDPF 63504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17012 PPIA peptidylprolyl isomerase A (cyclophilin A) 104272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17013 PPIAL4G 105392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17014 PPIC peptidylprolyl isomerase C (cyclophilin C) 129920 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17015 PPIF peptidylprolyl isomerase F (cyclophilin F) 100492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17016 PPIL1 peptidylprolyl isomerase (cyclophilin)-like 1 115808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17017 PPIL3 peptidylprolyl isomerase (cyclophilin)-like 3 114240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17018 PPM1J protein phosphatase 1J (PP2C domain containing) 286440 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17019 PPM1M protein phosphatase 1M (PP2C domain containing) 207416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17020 PPP1CA protein phosphatase 1, catalytic subunit, alpha isoform 228452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17021 PPP1R11 protein phosphatase 1, regulatory (inhibitor) subunit 11 61152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17022 PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A 57120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17023 PPP1R14B protein phosphatase 1, regulatory (inhibitor) subunit 14B 69328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17024 PPP1R16A protein phosphatase 1, regulatory (inhibitor) subunit 16A 192592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17025 PPP1R1A protein phosphatase 1, regulatory (inhibitor) subunit 1A 102144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17026 PPP1R8 protein phosphatase 1, regulatory (inhibitor) subunit 8 234696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17027 PPP1R9B protein phosphatase 1, regulatory (inhibitor) subunit 9B 303020 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17028 PPP2R4 protein phosphatase 2A activator, regulatory subunit 4 236552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17029 PPP2R5D protein phosphatase 2, regulatory subunit B', delta isoform 419552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17030 PPP4C protein phosphatase 4 (formerly X), catalytic subunit 210112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17031 PPT1 palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) 214368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17032 PPY pancreatic polypeptide 56864 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17033 PQLC1 PQ loop repeat containing 1 152656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17034 PRAC 17696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17035 PRAMEF17 PRAME family member 17 156748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17036 PRAMEF18 PRAME family member 18 201292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17037 PRAMEF19 PRAME family member 19 201292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17038 PRAMEF2 PRAME family member 2 321888 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17039 PRCC papillary renal cell carcinoma (translocation-associated) 315596 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17040 PRCD progressive rod-cone degeneration 39240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17041 PRDX2 peroxiredoxin 2 138516 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17042 PRDX3 peroxiredoxin 3 170016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17043 PRDX4 peroxiredoxin 4 177224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17044 PRDX5 peroxiredoxin 5 149720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17045 PRELID1 PRELI domain containing 1 145516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17046 PRF1 perforin 1 (pore forming protein) 358668 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17047 PRH1 proline-rich protein HaeIII subfamily 1 115808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17048 PRIC285 1084316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17049 PRIM1 primase, DNA, polypeptide 1 (49kDa) 285448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17050 PRKAR2A protein kinase, cAMP-dependent, regulatory, type II, alpha 258872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17051 PRKCZ protein kinase C, zeta 368908 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17052 PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 118636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17053 PRLH prolactin releasing hormone 47736 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17054 PRLHR prolactin releasing hormone receptor 167860 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17055 PRM3 protamine 3 49848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17056 PRND prion protein 2 (dublet) 114128 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17057 PROCR protein C receptor, endothelial (EPCR) 163240 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17058 PRODH proline dehydrogenase (oxidase) 1 282900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17059 PRPF39 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) 407080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17060 PRR15 proline rich 15 55020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17061 PRR15L 70784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17062 PRR25 160844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17063 PRR3 proline rich 3 90524 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17064 PRR5 proline rich 5 (renal) 172060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17065 PRR7 proline rich 7 (synaptic) 94836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17066 PRRG2 proline rich Gla (G-carboxyglutamic acid) 2 125200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17067 PRRX2 paired related homeobox 2 99596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17068 PRSS33 protease, serine, 33 87416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17069 PRSS50 242564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17070 PRSS53 336692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17071 PRSSL1 protease, serine-like 1 143028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17072 PRTN3 proteinase 3 (serine proteinase, neutrophil, Wegener granulomatosis autoantigen) 129188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17073 PSENEN presenilin enhancer 2 homolog (C. elegans) 71232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17074 PSG11 pregnancy specific beta-1-glycoprotein 11 230272 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17075 PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6 172256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17076 PSMB1 proteasome (prosome, macropain) subunit, beta type, 1 168000 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17077 PSMB10 proteasome (prosome, macropain) subunit, beta type, 10 181960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17078 PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 184352 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17079 PSMB7 proteasome (prosome, macropain) subunit, beta type, 7 193984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17080 PSMC1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 303080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17081 PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 262976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17082 PSME1 proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) 190736 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17083 PSME2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) 171136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17084 PSMG1 proteasome (prosome, macropain) assembly chaperone 1 185500 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17085 PSMG2 proteasome (prosome, macropain) assembly chaperone 2 181580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17086 PSMG3 proteasome (prosome, macropain) assembly chaperone 3 74452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17087 PSORS1C1 psoriasis susceptibility 1 candidate 1 75320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17088 PSPN persephin 51576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17089 PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 174372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17090 PTDSS2 phosphatidylserine synthase 2 283912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17091 PTF1A pancreas specific transcription factor, 1a 79324 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17092 PTGDS prostaglandin D2 synthase 21kDa (brain) 113652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17093 PTGER4 prostaglandin E receptor 4 (subtype EP4) 303408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17094 PTGES prostaglandin E synthase 91136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17095 PTGES2 prostaglandin E synthase 2 202356 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17096 PTK6 PTK6 protein tyrosine kinase 6 240844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17097 PTMA prothymosin, alpha 64476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17098 PTPLB protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b 130184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17099 PTPRCAP protein tyrosine phosphatase, receptor type, C-associated protein 78624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17100 PTRH1 peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) 98616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17101 PTRH2 peptidyl-tRNA hydrolase 2 121856 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17102 PTS 6-pyruvoyltetrahydropterin synthase 84000 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17103 PTTG1IP pituitary tumor-transforming 1 interacting protein 100352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17104 PTTG2 pituitary tumor-transforming 2 129920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17105 PUF60 poly-U binding splicing factor 60KDa 294040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17106 PURA purine-rich element binding protein A 161616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17107 PUSL1 pseudouridylate synthase-like 1 108696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17108 PVALB parvalbumin 78176 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17109 PVRIG poliovirus receptor related immunoglobulin domain containing 212256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17110 PXN paxillin 369020 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17111 PXT1 peroxisomal, testis specific 1 38976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17112 PYCARD PYD and CARD domain containing 123220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17113 PYCR1 pyrroline-5-carboxylate reductase 1 168728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17114 PYCR2 pyrroline-5-carboxylate reductase family, member 2 206080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17115 PYCRL pyrroline-5-carboxylate reductase-like 143924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17116 PYDC2 66752 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17117 PYY peptide YY 64512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17118 QDPR quinoid dihydropteridine reductase 160496 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17119 QPCTL glutaminyl-peptide cyclotransferase-like 233044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17120 QRFP pyroglutamylated RFamide peptide 72128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17121 RAB10 RAB10, member RAS oncogene family 140448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17122 RAB11FIP3 RAB11 family interacting protein 3 (class II) 338988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17123 RAB12 RAB12, member RAS oncogene family 139356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17124 RAB13 RAB13, member RAS oncogene family 144256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17125 RAB1A RAB1A, member RAS oncogene family 140136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17126 RAB2A RAB2A, member RAS oncogene family 139104 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17127 RAB2B RAB2B, member RAS oncogene family 152992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17128 RAB35 RAB35, member RAS oncogene family 128576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17129 RAB40A RAB40A, member RAS oncogene family 187712 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17130 RAB5A RAB5A, member RAS oncogene family 149632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17131 RAB5C RAB5C, member RAS oncogene family 150304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17132 RAB6B RAB6B, member RAS oncogene family 147616 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17133 RAB6C RAB6C, member RAS oncogene family 172256 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17134 RABAC1 Rab acceptor 1 (prenylated) 117292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17135 RABEPK Rab9 effector protein with kelch motifs 256928 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17136 RABL2B RAB, member of RAS oncogene family-like 2B 153636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17137 RABL5 RAB, member RAS oncogene family-like 5 125860 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17138 RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 140000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17139 RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 125960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17140 RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 93044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17141 RAD51 RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) 236544 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17142 RAD9A RAD9 homolog A (S. pombe) 259812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17143 RAET1G retinoic acid early transcript 1G 190016 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17144 RAG1AP1 recombination activating gene 1 activating protein 1 154560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17145 RAMP2 receptor (G protein-coupled) activity modifying protein 2 99232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17146 RANGRF RAN guanine nucleotide release factor 135520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17147 RAP2C RAP2C, member of RAS oncogene family 125440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17148 RAPGEFL1 Rap guanine nucleotide exchange factor (GEF)-like 1 279776 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17149 RARA retinoic acid receptor, alpha 301780 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17150 RARRES2 retinoic acid receptor responder (tazarotene induced) 2 80284 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17151 RASD1 RAS, dexamethasone-induced 1 138432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17152 RASL10B RAS-like, family 10, member B 126980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17153 RASL11B RAS-like, family 11, member B 158648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17154 RASL12 RAS-like, family 12 152796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17155 RASSF1 Ras association (RalGDS/AF-6) domain family member 1 211312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17156 RASSF10 Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 178864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17157 RASSF3 Ras association (RalGDS/AF-6) domain family member 3 155428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17158 RASSF7 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 137424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17159 RBBP4 retinoblastoma binding protein 4 292544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17160 RBKS ribokinase 224224 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17161 RBM11 RNA binding motif protein 11 182152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17162 RBM18 RNA binding motif protein 18 132832 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17163 RBM23 RNA binding motif protein 23 295680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17164 RBMXL1 263648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17165 RCAN2 regulator of calcineurin 2 136640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17166 RDH14 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) 139328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17167 RDM1 RAD52 motif 1 209888 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17168 RECQL4 RecQ protein-like 4 472976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17169 REEP1 receptor accessory protein 1 125188 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17170 REEP4 receptor accessory protein 4 172972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17171 REEP6 receptor accessory protein 6 95716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17172 REG4 regenerating islet-derived family, member 4 113568 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17173 RELB v-rel reticuloendotheliosis viral oncogene homolog B, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (avian) 319844 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17174 REM2 RAS (RAD and GEM)-like GTP binding 2 158144 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17175 REPIN1 replication initiator 1 263984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17176 RER1 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) 137760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17177 RETN resistin 68544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17178 RETNLB resistin like beta 77952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17179 REXO1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) 544200 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17180 REXO2 REX2, RNA exonuclease 2 homolog (S. cerevisiae) 152020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17181 RFC2 replication factor C (activator 1) 2, 40kDa 238588 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17182 RFC3 replication factor C (activator 1) 3, 38kDa 256172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17183 RFK riboflavin kinase 101052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17184 RFNG RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 137312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17185 RFPL1 ret finger protein-like 1 215236 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17186 RFT1 RFT1 homolog (S. cerevisiae) 366584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17187 RFX1 regulatory factor X, 1 (influences HLA class II expression) 477712 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17188 RFXANK regulatory factor X-associated ankyrin-containing protein 180292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17189 RGL2 ral guanine nucleotide dissociation stimulator-like 2 500024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17190 RGMA RGM domain family, member A 263776 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17191 RGS11 regulator of G-protein signaling 11 190256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17192 RGS19 regulator of G-protein signaling 19 136640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17193 RGS9BP regulator of G protein signaling 9 binding protein 59220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17194 RHBDD2 rhomboid domain containing 2 212584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17195 RHBDD3 rhomboid domain containing 3 149116 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17196 RHBDL1 rhomboid, veinlet-like 1 (Drosophila) 161392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17197 RHBDL2 rhomboid, veinlet-like 2 (Drosophila) 210560 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17198 RHEB Ras homolog enriched in brain 126644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17199 RHOB ras homolog gene family, member B 116984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17200 RHOD ras homolog gene family, member D 101780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17201 RHOG ras homolog gene family, member G (rho G) 129920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17202 RHOQ ras homolog gene family, member Q 139132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17203 RHOT2 ras homolog gene family, member T2 277312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17204 RHOU ras homolog gene family, member U 137172 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17205 RHOV ras homolog gene family, member V 128884 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17206 RHOXF2 Rhox homeobox family, member 2 171496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17207 RHPN1 rhophilin, Rho GTPase binding protein 1 278668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17208 RICH2 496768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17209 RILPL1 Rab interacting lysosomal protein-like 1 211864 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17210 RIN1 Ras and Rab interactor 1 325684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17211 RIPPLY1 ripply1 homolog (zebrafish) 94848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17212 RLN3 relaxin 3 93856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17213 RMND1 required for meiotic nuclear division 1 homolog (S. cerevisiae) 312256 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17214 RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae) 265772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17215 RNASE12 ribonuclease, RNase A family, 12 (non-active) 100352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17216 RNASE13 ribonuclease, RNase A family, 13 (non-active) 106400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17217 RNASEH1 ribonuclease H1 173124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17218 RNASEH2B ribonuclease H2, subunit B 204960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17219 RNASEH2C ribonuclease H2, subunit C 97020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17220 RNASEK ribonuclease, RNase K 67992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17221 RNASEN ribonuclease type III, nuclear 914480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17222 RNF114 141736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17223 RNF125 ring finger protein 125 156912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17224 RNF126 ring finger protein 126 142564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17225 RNF128 ring finger protein 128 363468 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17226 RNF13 ring finger protein 13 264768 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17227 RNF151 ring finger protein 151 106792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17228 RNF166 ring finger protein 166 105464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17229 RNF181 ring finger protein 181 107968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17230 RNF183 ring finger protein 183 130592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17231 RNF186 ring finger protein 186 154112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17232 RNF215 ring finger protein 215 159132 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17233 RNF26 ring finger protein 26 279440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17234 RNF4 ring finger protein 4 134624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17235 RNF44 ring finger protein 44 225616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17236 RNF5 ring finger protein 5 105168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17237 RNF7 ring finger protein 7 77800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17238 RNLS 253792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17239 RNMTL1 RNA methyltransferase like 1 286076 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17240 RNPC3 RNA-binding region (RNP1, RRM) containing 3 36320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17241 RNPEPL1 arginyl aminopeptidase (aminopeptidase B)-like 1 241976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17242 ROGDI rogdi homolog (Drosophila) 150408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17243 ROMO1 55552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17244 ROPN1 ropporin, rhophilin associated protein 1 147532 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17245 RPA3 replication protein A3, 14kDa 85568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17246 RPH3AL rabphilin 3A-like (without C2 domains) 195456 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17247 RPL12 ribosomal protein L12 116564 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17248 RPL13 ribosomal protein L13 94948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17249 RPL13A ribosomal protein L13a 129744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17250 RPL14 ribosomal protein L14 145936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17251 RPL15 ribosomal protein L15 140280 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17252 RPL17 ribosomal protein L17 128268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17253 RPL18 ribosomal protein L18 133280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17254 RPL23 ribosomal protein L23 99232 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17255 RPL23A ribosomal protein L23a 105956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17256 RPL26 ribosomal protein L26 99204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17257 RPL26L1 ribosomal protein L26-like 1 100800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17258 RPL27 ribosomal protein L27 95648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17259 RPL27A ribosomal protein L27a 104608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17260 RPL29 ribosomal protein L29 88200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17261 RPL30 ribosomal protein L30 81536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17262 RPL34 ribosomal protein L34 82880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17263 RPL35A ribosomal protein L35a 78176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17264 RPL36 ribosomal protein L36 45404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17265 RPL36A ribosomal protein L36a 65716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17266 RPL36AL ribosomal protein L36a-like 71372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17267 RPL37 ribosomal protein L37 69440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17268 RPL37A ribosomal protein L37a 66080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17269 RPL38 ribosomal protein L38 51296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17270 RPL39L ribosomal protein L39-like 35840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17271 RPL41 ribosomal protein L41 13768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17272 RPL7A ribosomal protein L7a 182812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17273 RPL7L1 ribosomal protein L7-like 1 168672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17274 RPL8 ribosomal protein L8 162148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17275 RPLP1 ribosomal protein, large, P1 68592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17276 RPLP2 ribosomal protein, large, P2 70868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17277 RPN1 ribophorin I 358808 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17278 RPP21 ribonuclease P/MRP 21kDa subunit 83580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17279 RPP25 ribonuclease P/MRP 25kDa subunit 58828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17280 RPRML reprimo-like 39984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17281 RPS10 ribosomal protein S10 109396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17282 RPS12 ribosomal protein S12 93856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17283 RPS14 ribosomal protein S14 105728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17284 RPS15 ribosomal protein S15 74492 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17285 RPS19 ribosomal protein S19 95368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17286 RPS21 ribosomal protein S21 60928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17287 RPS24 ribosomal protein S24 85784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17288 RPS25 ribosomal protein S25 88256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17289 RPS26 ribosomal protein S26 73892 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17290 RPS27 ribosomal protein S27 (metallopanstimulin 1) 60704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17291 RPS27A ribosomal protein S27a 109984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17292 RPS28 ribosomal protein S28 32396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17293 RPS29 ribosomal protein S29 51296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17294 RPS3A ribosomal protein S3A 171192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17295 RPS4Y1 ribosomal protein S4, Y-linked 1 114800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17296 RPS4Y2 ribosomal protein S4, Y-linked 2 114800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17297 RPS5 ribosomal protein S5 139972 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17298 RPS6 ribosomal protein S6 173376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17299 RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4 325996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17300 RPS6KL1 ribosomal protein S6 kinase-like 1 346312 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17301 RPS7 ribosomal protein S7 136248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17302 RPS8 ribosomal protein S8 144396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17303 RPTN repetin 529312 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17304 RPUSD1 RNA pseudouridylate synthase domain containing 1 144816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17305 RPUSD2 RNA pseudouridylate synthase domain containing 2 332296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17306 RPUSD3 RNA pseudouridylate synthase domain containing 3 230244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17307 RRAGA Ras-related GTP binding A 211768 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17308 RRAS related RAS viral (r-ras) oncogene homolog 130536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17309 RRM2B ribonucleotide reductase M2 B (TP53 inducible) 246848 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17310 RRP1 ribosomal RNA processing 1 homolog (S. cerevisiae) 249388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17311 RRP15 ribosomal RNA processing 15 homolog (S. cerevisiae) 194656 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17312 RRP7A 159964 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17313 RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 164640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17314 RSPH10B2 611648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17315 RSU1 Ras suppressor protein 1 193984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17316 RTEL1 regulator of telomere elongation helicase 1 690816 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17317 RTN4R reticulon 4 receptor 198296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17318 RTP2 receptor (chemosensory) transporter protein 2 153664 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17319 RTP3 receptor (chemosensory) transporter protein 3 154084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17320 RUSC1 RUN and SH3 domain containing 1 576996 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17321 S100A1 S100 calcium binding protein A1 65632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17322 S100A10 S100 calcium binding protein A10 67648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17323 S100A12 S100 calcium binding protein A12 64288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17324 S100A3 S100 calcium binding protein A3 70336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17325 S100A4 S100 calcium binding protein A4 70336 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17326 S100A5 S100 calcium binding protein A5 77280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17327 S100A6 S100 calcium binding protein A6 62944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17328 S100A7A S100 calcium binding protein A7A 70336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17329 S100A8 S100 calcium binding protein A8 64960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17330 S100P S100 calcium binding protein P 66304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17331 S1PR2 227192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17332 S1PR4 162848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17333 SAC3D1 SAC3 domain containing 1 96516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17334 SAMD1 sterile alpha motif domain containing 1 136184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17335 SAMD13 sterile alpha motif domain containing 13 81652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17336 SAMD4B sterile alpha motif domain containing 4B 477792 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17337 SAMD5 sterile alpha motif domain containing 5 72492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17338 SAP30L SAP30-like 99792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17339 SAPS1 SAPS domain family, member 1 569400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17340 SAR1B SAR1 gene homolog B (S. cerevisiae) 139104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17341 SARNP 151648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17342 SAV1 salvador homolog 1 (Drosophila) 259672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17343 SBDS Shwachman-Bodian-Diamond syndrome 173152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17344 SBK2 134428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17345 SBNO2 strawberry notch homolog 2 (Drosophila) 471500 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17346 SCAMP4 secretory carrier membrane protein 4 143208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17347 SCAND1 SCAN domain containing 1 52780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17348 SCARF1 scavenger receptor class F, member 1 412520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17349 SCCPDH saccharopine dehydrogenase (putative) 274080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17350 SCG5 secretogranin V (7B2 protein) 147616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17351 SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin) 64512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17352 SCGB1C1 secretoglobin, family 1C, member 1 64984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17353 SCGB1D2 secretoglobin, family 1D, member 2 63840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17354 SCGB1D4 secretoglobin, family 1D, member 4 59136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17355 SCGB2A2 secretoglobin, family 2A, member 2 65856 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17356 SCGB3A2 secretoglobin, family 3A, member 2 65856 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17357 SCNN1D sodium channel, nonvoltage-gated 1, delta 246680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17358 SCO2 SCO cytochrome oxidase deficient homolog 2 (yeast) 141680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17359 SCRG1 68320 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17360 SCRN1 secernin 1 285376 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17361 SCRT2 scratch homolog 2, zinc finger protein (Drosophila) 74760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17362 SDCCAG8 serologically defined colon cancer antigen 8 492240 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17363 SDF2L1 stromal cell-derived factor 2-like 1 71540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17364 SDF4 stromal cell derived factor 4 252028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17365 SDHC succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 143584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17366 SDR42E1 266560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17367 SEC11A SEC11 homolog A (S. cerevisiae) 120080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17368 SEC61G Sec61 gamma subunit 49056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17369 SELENBP1 selenium binding protein 1 320312 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17370 SELK 62200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17371 SELM 63140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17372 SELS 115136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17373 SELV 103280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17374 SEMA4C sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 512456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17375 SENP8 SUMO/sentrin specific peptidase family member 8 144032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17376 SEP15 116032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17377 SEPT8 septin 8 338912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17378 SEPW1 selenoprotein W, 1 58488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17379 SEPX1 selenoprotein X, 1 68992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17380 SERF2 small EDRK-rich factor 2 43008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17381 SERHL2 serine hydrolase-like 2 148240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17382 SERINC4 serine incorporator 4 191968 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17383 SERINC5 serine incorporator 5 277180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17384 SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 269024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17385 SERPINF2 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 324884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17386 SERTAD1 SERTA domain containing 1 146248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17387 SET SET translocation (myeloid leukemia-associated) 186860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17388 SETD6 SET domain containing 6 247380 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17389 SF3B5 splicing factor 3b, subunit 5, 10kDa 59360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17390 SF4 splicing factor 4 434560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17391 SFN stratifin 167972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17392 SFRS1 splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor) 166600 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17393 SFRS12 splicing factor, arginine/serine-rich 12 408312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17394 SFRS12IP1 SFRS12-interacting protein 1 109312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17395 SFRS13A 111672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17396 SFRS13B 176848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17397 SFRS16 splicing factor, arginine/serine-rich 16 339948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17398 SFRS2 splicing factor, arginine/serine-rich 2 134400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17399 SFRS2B splicing factor, arginine/serine-rich 2B 122164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17400 SFRS5 splicing factor, arginine/serine-rich 5 189728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17401 SFRS6 splicing factor, arginine/serine-rich 6 216944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17402 SFRS7 splicing factor, arginine/serine-rich 7, 35kDa 167776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17403 SFRS8 splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila) 637592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17404 SFRS9 splicing factor, arginine/serine-rich 9 146160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17405 SFT2D2 SFT2 domain containing 2 106248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17406 SFTA2 34860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17407 SGEF 571456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17408 SGSM3 small G protein signaling modulator 3 475320 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17409 SH2B2 SH2B adaptor protein 2 177408 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17410 SH2D5 SH2 domain containing 5 198716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17411 SH2D6 SH2 domain containing 6 102844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17412 SH3BGRL SH3 domain binding glutamic acid-rich protein like 80864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17413 SH3BGRL3 SH3 domain binding glutamic acid-rich protein like 3 55888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17414 SH3RF2 SH3 domain containing ring finger 2 498624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17415 SHARPIN SHANK-associated RH domain interactor 221900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17416 SHB Src homology 2 domain containing adaptor protein B 211168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17417 SHH sonic hedgehog homolog (Drosophila) 172648 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17418 SHISA2 shisa homolog 2 (Xenopus laevis) 124992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17419 SHISA4 shisa homolog 4 (Xenopus laevis) 120288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17420 SIAH3 183232 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17421 SIGIRR single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 164412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17422 SIM2 single-minded homolog 2 (Drosophila) 360296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17423 SIRT3 sirtuin (silent mating type information regulation 2 homolog) 3 (S. cerevisiae) 233408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17424 SIRT6 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 163780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17425 SKA1 177408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17426 SKAP1 src kinase associated phosphoprotein 1 245872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17427 SKI v-ski sarcoma viral oncogene homolog (avian) 222940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17428 SLA2 Src-like-adaptor 2 182336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17429 SLAIN1 SLAIN motif family, member 1 240576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17430 SLAIN2 SLAIN motif family, member 2 310240 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17431 SLC12A7 solute carrier family 12 (potassium/chloride transporters), member 7 604512 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17432 SLC15A3 solute carrier family 15, member 3 282296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17433 SLC16A11 solute carrier family 16, member 11 (monocarboxylic acid transporter 11) 162988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17434 SLC16A3 solute carrier family 16, member 3 (monocarboxylic acid transporter 4) 188916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17435 SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 136948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17436 SLC25A10 solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 154196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17437 SLC25A22 solute carrier family 25 (mitochondrial carrier: glutamate), member 22 157900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17438 SLC25A26 solute carrier family 25, member 26 142832 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17439 SLC25A27 solute carrier family 25, member 27 225792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17440 SLC25A29 solute carrier family 25, member 29 103880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17441 SLC25A33 solute carrier family 25, member 33 209216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17442 SLC25A38 solute carrier family 25, member 38 211232 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17443 SLC25A39 solute carrier family 25, member 39 230600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17444 SLC25A41 solute carrier family 25, member 41 233324 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17445 SLC26A1 solute carrier family 26 (sulfate transporter), member 1 222488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17446 SLC26A6 solute carrier family 26, member 6 524744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17447 SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11 339360 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17448 SLC2A4RG SLC2A4 regulator 159292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17449 SLC30A2 solute carrier family 30 (zinc transporter), member 2 253708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17450 SLC34A3 solute carrier family 34 (sodium phosphate), member 3 275520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17451 SLC35C1 solute carrier family 35, member C1 241024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17452 SLC35F2 solute carrier family 35, member F2 233632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17453 SLC35F5 solute carrier family 35, member F5 364208 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17454 SLC36A1 solute carrier family 36 (proton/amino acid symporter), member 1 329504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17455 SLC39A1 solute carrier family 39 (zinc transporter), member 1 221088 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17456 SLC39A13 solute carrier family 39 (zinc transporter), member 13 248024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17457 SLC39A3 solute carrier family 39 (zinc transporter), member 3 180460 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17458 SLC46A1 solute carrier family 46 (folate transporter), member 1 266596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17459 SLC4A2 solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) 753536 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17460 SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 424704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17461 SLC7A4 solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 382004 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17462 SLC7A6 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 354816 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17463 SLC9A3R2 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2 124424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17464 SLMO1 slowmo homolog 1 (Drosophila) 92456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17465 SLMO2 slowmo homolog 2 (Drosophila) 136416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17466 SLPI secretory leukocyte peptidase inhibitor 92960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17467 SLURP1 secreted LY6/PLAUR domain containing 1 66948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17468 SMAD6 SMAD family member 6 126768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17469 SMAD7 SMAD family member 7 193900 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17470 SMAGP 68544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17471 SMCP sperm mitochondria-associated cysteine-rich protein 79520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17472 SMCR7 Smith-Magenis syndrome chromosome region, candidate 7 207368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17473 SMNDC1 survival motor neuron domain containing 1 165088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17474 SMPD2 sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) 293888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17475 SMPX small muscle protein, X-linked 62496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17476 SMTNL2 smoothelin-like 2 182028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17477 SMU1 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) 356160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17478 SMYD4 SET and MYND domain containing 4 547880 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17479 SNAI3 snail homolog 3 (Drosophila) 160664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17480 SNAPIN SNAP-associated protein 87080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17481 SNCB synuclein, beta 95200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17482 SNCG synuclein, gamma (breast cancer-specific protein 1) 84920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17483 SNF8 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) 181216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17484 SNN stannin 60704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17485 SNRNP40 249536 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17486 SNRNP48 206216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17487 SNRPA1 small nuclear ribonucleoprotein polypeptide A' 160832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17488 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa 84224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17489 SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa 82656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17490 SNRPF small nuclear ribonucleoprotein polypeptide F 62048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17491 SNRPG small nuclear ribonucleoprotein polypeptide G 55328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17492 SNTN 103040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17493 SNX15 sorting nexin 15 237664 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17494 SNX24 sorting nexin 24 115136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17495 SNX4 sorting nexin 4 296648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17496 SNX6 sorting nexin 6 276736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17497 SOCS1 suppressor of cytokine signaling 1 41076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17498 SOCS3 suppressor of cytokine signaling 3 88956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17499 SOCS7 suppressor of cytokine signaling 7 249200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17500 SOD1 superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult)) 108640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17501 SOD3 superoxide dismutase 3, extracellular 57400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17502 SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 212996 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17503 SOLH small optic lobes homolog (Drosophila) 308980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17504 SOX11 SRY (sex determining region Y)-box 11 136752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17505 SOX12 SRY (sex determining region Y)-box 12 64400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17506 SOX15 SRY (sex determining region Y)-box 15 104536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17507 SOX18 SRY (sex determining region Y)-box 18 77140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17508 SOX4 SRY (sex determining region Y)-box 4 143076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17509 SOX8 SRY (sex determining region Y)-box 8 123620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17510 SP2 Sp2 transcription factor 413424 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17511 SP5 Sp5 transcription factor 116172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17512 SPA17 sperm autoantigenic protein 17 105728 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17513 SPAG11A sperm associated antigen 11A 39984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17514 SPAG7 sperm associated antigen 7 159488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17515 SPANXD SPANX family, member D 67648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17516 SPANXN1 SPANX family, member N1 50848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17517 SPATA21 spermatogenesis associated 21 324472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17518 SPATA2L spermatogenesis associated 2-like 182448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17519 SPATC1 spermatogenesis and centriole associated 1 277144 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17520 SPATS1 spermatogenesis associated, serine-rich 1 209440 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17521 SPC24 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) 89468 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17522 SPDYE5 217592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17523 SPHAR 43904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17524 SPIB Spi-B transcription factor (Spi-1/PU.1 related) 123116 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17525 SPIC Spi-C transcription factor (Spi-1/PU.1 related) 171808 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17526 SPIN2A spindlin family, member 2A 137172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17527 SPIN4 spindlin family, member 4 168624 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17528 SPINK1 serine peptidase inhibitor, Kazal type 1 57344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17529 SPINK13 67424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17530 SPINK4 serine peptidase inhibitor, Kazal type 4 62048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17531 SPINK6 serine peptidase inhibitor, Kazal type 6 58016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17532 SPINK8 serine peptidase inhibitor, Kazal type 8 (putative) 63944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17533 SPINK9 serine peptidase inhibitor, Kazal type 9 62048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17534 SPINLW1 serine peptidase inhibitor-like, with Kunitz and WAP domains 1 (eppin) 103264 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17535 SPINT4 serine peptidase inhibitor, Kunitz type 4 69888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17536 SPR sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) 109760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17537 SPRR1B small proline-rich protein 1B (cornifin) 61376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17538 SPRR2D small proline-rich protein 2D 49952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17539 SPRR2G small proline-rich protein 2G 50624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17540 SPRR4 small proline-rich protein 4 54656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17541 SPRY2 sprouty homolog 2 (Drosophila) 213248 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17542 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 174664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17543 SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 148540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17544 SPSB3 splA/ryanodine receptor domain and SOCS box containing 3 176736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17545 SRA1 steroid receptor RNA activator 1 154840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17546 SRM spermidine synthase 179872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17547 SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) 96544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17548 SRP9 signal recognition particle 9kDa 61152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17549 SRPK3 SFRS protein kinase 3 294112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17550 SRXN1 sulfiredoxin 1 homolog (S. cerevisiae) 60732 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17551 SRY sex determining region Y 86660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17552 SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 205536 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17553 SS18L2 synovial sarcoma translocation gene on chromosome 18-like 2 55104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17554 SSBP4 single stranded DNA binding protein 4 192384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17555 SSPN sarcospan (Kras oncogene-associated gene) 116704 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17556 SSR3 signal sequence receptor, gamma (translocon-associated protein gamma) 129472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17557 SSR4 signal sequence receptor, delta (translocon-associated protein delta) 115556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17558 SSSCA1 Sjogren syndrome/scleroderma autoantigen 1 124376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17559 SSTR3 somatostatin receptor 3 195440 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17560 SSTR5 somatostatin receptor 5 171668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17561 SSX1 synovial sarcoma, X breakpoint 1 132384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17562 SSX7 synovial sarcoma, X breakpoint 7 132384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17563 ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 272384 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17564 STAC3 SH3 and cysteine rich domain 3 255136 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17565 STAG3L3 stromal antigen 3-like 3 31660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17566 STAG3L4 stromal antigen 3-like 4 105056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17567 STARD5 StAR-related lipid transfer (START) domain containing 5 149184 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17568 STARD7 StAR-related lipid transfer (START) domain containing 7 227308 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17569 STAT5A signal transducer and activator of transcription 5A 508956 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17570 STATH statherin 45920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17571 STK11 serine/threonine kinase 11 205548 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17572 STK32C serine/threonine kinase 32C 237500 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17573 STMN3 stathmin-like 3 95464 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17574 STON1 stonin 1 497280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17575 STRA13 stimulated by retinoic acid 13 homolog (mouse) 13860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17576 STUB1 STIP1 homology and U-box containing protein 1 145572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17577 STX10 syntaxin 10 173332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17578 SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 281120 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17579 SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae) 199136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17580 SUMO1 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) 73024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17581 SUMO2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) 62496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17582 SUMO4 SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae) 65324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17583 SUN5 266872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17584 SURF1 surfeit 1 184632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17585 SURF2 surfeit 2 125592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17586 SUV420H2 suppressor of variegation 4-20 homolog 2 (Drosophila) 205344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17587 SVOP SV2 related protein homolog (rat) 199032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17588 SYAP1 synapse associated protein 1, SAP47 homolog (Drosophila) 218008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17589 SYCN syncollin 76244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17590 SYNGR1 synaptogyrin 1 171388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17591 SYNGR2 synaptogyrin 2 131712 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17592 SYNGR3 synaptogyrin 3 68740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17593 SYP synaptophysin 185760 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17594 SYT11 synaptotagmin XI 293888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17595 SYT8 synaptotagmin VIII 210420 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17596 TAC3 tachykinin 3 (neuromedin K, neurokinin beta) 86464 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17597 TACO1 162540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17598 TACSTD2 tumor-associated calcium signal transducer 2 163436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17599 TADA2A 314048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17600 TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa 94836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17601 TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 113344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17602 TAF13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa 43520 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17603 TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa 404320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17604 TAGLN3 transgelin 3 137984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17605 TAL1 T-cell acute lymphocytic leukemia 1 133896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17606 TARDBP TAR DNA binding protein 283360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17607 TAS2R31 taste receptor, type 2, member 31 209216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17608 TAS2R40 taste receptor, type 2, member 40 218624 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17609 TAS2R42 taste receptor, type 2, member 42 212576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17610 TAS2R43 taste receptor, type 2, member 43 209216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17611 TAX1BP3 Tax1 (human T-cell leukemia virus type I) binding protein 3 77084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17612 TBC1D13 TBC1 domain family, member 13 276552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17613 TBC1D29 TBC1 domain family, member 29 105952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17614 TBCB tubulin folding cofactor B 128632 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17615 TBKBP1 TBK1 binding protein 1 254856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17616 TBL3 transducin (beta)-like 3 474432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17617 TBRG1 transforming growth factor beta regulator 1 152192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17618 TBX10 T-box 10 234480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17619 TBX2 T-box 2 216468 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17620 TBXA2R thromboxane A2 receptor 148148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17621 TCAP titin-cap (telethonin) 94108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17622 TCEAL1 transcription elongation factor A (SII)-like 1 99984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17623 TCEAL3 transcription elongation factor A (SII)-like 3 135968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17624 TCEAL7 transcription elongation factor A (SII)-like 7 64688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17625 TCEAL8 transcription elongation factor A (SII)-like 8 80192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17626 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) 78624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17627 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 105064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17628 TCEB3C transcription elongation factor B polypeptide 3C (elongin A3) 275632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17629 TCF19 transcription factor 19 (SC1) 157248 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17630 TCF21 transcription factor 21 115780 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17631 TCP10L t-complex 10 (mouse)-like 148736 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17632 TCP11L1 t-complex 11 (mouse)-like 1 350784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17633 TCTE3 t-complex-associated-testis-expressed 3 137312 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17634 TCTEX1D4 Tctex1 domain containing 4 40600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17635 TDGF1 teratocarcinoma-derived growth factor 1 132384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17636 TEDDM1 transmembrane epididymal protein 1 185024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17637 TELO2 TEL2, telomere maintenance 2, homolog (S. cerevisiae) 477564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17638 TEX101 testis expressed 101 185472 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17639 TEX19 102620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17640 TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) 194236 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17641 TFAP4 transcription factor AP-4 (activating enhancer binding protein 4) 233072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17642 TFB1M transcription factor B1, mitochondrial 239456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17643 TFB2M transcription factor B2, mitochondrial 273952 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17644 TFF1 trefoil factor 1 59808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17645 TFF3 trefoil factor 3 (intestinal) 65940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17646 TFPT TCF3 (E2A) fusion partner (in childhood Leukemia) 172452 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17647 TGFA transforming growth factor, alpha 101808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17648 TGFB1I1 transforming growth factor beta 1 induced transcript 1 279356 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17649 TGFB3 transforming growth factor, beta 3 283808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17650 TGIF2LY TGFB-induced factor homeobox 2-like, Y-linked 78680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17651 TH tyrosine hydroxylase 220164 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17652 THAP1 THAP domain containing, apoptosis associated protein 1 146496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17653 THAP10 THAP domain containing 10 169536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17654 THAP6 THAP domain containing 6 153440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17655 THAP7 THAP domain containing 7 111720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17656 THG1L tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) 206304 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17657 THNSL2 threonine synthase-like 2 (S. cerevisiae) 323840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17658 THOC4 THO complex 4 121504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17659 THOP1 thimet oligopeptidase 1 375744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17660 THRSP thyroid hormone responsive (SPOT14 homolog, rat) 99680 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17661 THY1 Thy-1 cell surface antigen 111552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17662 THYN1 thymocyte nuclear protein 1 158144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17663 TICAM2 toll-like receptor adaptor molecule 2 159488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17664 TIFAB TRAF-interacting protein with forkhead-associated domain, family member B 109760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17665 TIGD3 tigger transposable element derived 3 277592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17666 TIGD5 tigger transposable element derived 5 161980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17667 TIMD4 T-cell immunoglobulin and mucin domain containing 4 262752 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -17668 TIMM13 translocase of inner mitochondrial membrane 13 homolog (yeast) 60916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17669 TIMM16 69244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17670 TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) 120960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17671 TIMM23 translocase of inner mitochondrial membrane 23 homolog (yeast) 62548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17672 TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast) 67648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17673 TIMM9 translocase of inner mitochondrial membrane 9 homolog (yeast) 63168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17674 TLX2 T-cell leukemia homeobox 2 88648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17675 TM2D3 TM2 domain containing 3 164052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17676 TM4SF18 transmembrane 4 L six family member 18 140224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17677 TM4SF5 transmembrane 4 L six family member 5 137536 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17678 TM6SF2 transmembrane 6 superfamily member 2 240380 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17679 TM7SF2 transmembrane 7 superfamily member 2 219660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17680 TMBIM6 203392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17681 TMC6 transmembrane channel-like 6 426660 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17682 TMCO4 transmembrane and coiled-coil domains 4 433104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17683 TMED1 transmembrane emp24 protein transport domain containing 1 127204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17684 TMED6 transmembrane emp24 protein transport domain containing 6 165536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17685 TMED7 transmembrane emp24 protein transport domain containing 7 143220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17686 TMED7-TICAM2 265076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17687 TMEM102 transmembrane protein 102 237916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17688 TMEM106A transmembrane protein 106A 71896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17689 TMEM106B transmembrane protein 106B 191072 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17690 TMEM110 transmembrane protein 110 172172 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17691 TMEM115 transmembrane protein 115 210084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17692 TMEM121 transmembrane protein 121 71972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17693 TMEM126A transmembrane protein 126A 135296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17694 TMEM126B transmembrane protein 126B 138656 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17695 TMEM127 transmembrane protein 127 124404 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17696 TMEM128 transmembrane protein 128 99008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17697 TMEM129 transmembrane protein 129 75096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17698 TMEM134 transmembrane protein 134 75252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17699 TMEM136 transmembrane protein 136 102816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17700 TMEM139 transmembrane protein 139 147616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17701 TMEM14A transmembrane protein 14A 70784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17702 TMEM14C transmembrane protein 14C 80416 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17703 TMEM14E 85568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17704 TMEM150A 187712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17705 TMEM151A transmembrane protein 151A 128156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17706 TMEM155 transmembrane protein 155 83512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17707 TMEM167B 37720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17708 TMEM170A 87556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17709 TMEM173 transmembrane protein 173 256284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17710 TMEM176A transmembrane protein 176A 158704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17711 TMEM179 transmembrane protein 179 82712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17712 TMEM183B transmembrane protein 183B 234528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17713 TMEM188 transmembrane protein 188 95872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17714 TMEM189 transmembrane protein 189 159488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17715 TMEM190 transmembrane protein 190 110336 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17716 TMEM196 transmembrane protein 196 72352 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17717 TMEM199 transmembrane protein 199 137508 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17718 TMEM200B transmembrane protein 200B 93016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17719 TMEM201 transmembrane protein 201 219660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17720 TMEM204 transmembrane protein 204 117936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17721 TMEM205 transmembrane protein 205 130368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17722 TMEM208 transmembrane protein 208 121464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17723 TMEM209 transmembrane protein 209 383080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17724 TMEM213 75264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17725 TMEM223 90568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17726 TMEM229B 112480 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17727 TMEM27 transmembrane protein 27 154008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17728 TMEM39B transmembrane protein 39B 253568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17729 TMEM45A transmembrane protein 45A 189952 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17730 TMEM50B transmembrane protein 50B 112224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17731 TMEM52 transmembrane protein 52 86268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17732 TMEM54 transmembrane protein 54 142264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17733 TMEM59 transmembrane protein 59 224896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17734 TMEM60 transmembrane protein 60 90944 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17735 TMEM61 transmembrane protein 61 144480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17736 TMEM68 transmembrane protein 68 176960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17737 TMEM69 transmembrane protein 69 168448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17738 TMEM72 179888 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17739 TMEM80 transmembrane protein 80 78456 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17740 TMEM82 transmembrane protein 82 176372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17741 TMEM86B transmembrane protein 86B 123064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17742 TMEM88 transmembrane protein 88 83168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17743 TMEM89 transmembrane protein 89 109312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17744 TMEM9 transmembrane protein 9 128128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17745 TMEM90A transmembrane protein 90A 163296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17746 TMEM91 transmembrane protein 91 135184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17747 TMEM93 transmembrane protein 93 66584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17748 TMEM97 transmembrane protein 97 121632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17749 TMEM98 transmembrane protein 98 157920 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17750 TMEM9B TMEM9 domain family, member B 117928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17751 TMIE transmembrane inner ear 87360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17752 TMOD3 tropomodulin 3 (ubiquitous) 245280 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17753 TMPRSS11E transmembrane protease, serine 11E 287392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17754 TMSB10 thymosin beta 10 32032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17755 TMSB15B 32704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17756 TMSB4X thymosin beta 4, X-linked 32032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17757 TMSB4Y thymosin beta 4, Y-linked 20020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17758 TMUB1 transmembrane and ubiquitin-like domain containing 1 117152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17759 TMUB2 transmembrane and ubiquitin-like domain containing 2 206976 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17760 TNF tumor necrosis factor (TNF superfamily, member 2) 120680 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17761 TNFAIP8L1 tumor necrosis factor, alpha-induced protein 8-like 1 57472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17762 TNFAIP8L2 tumor necrosis factor, alpha-induced protein 8-like 2 125216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17763 TNFRSF12A tumor necrosis factor receptor superfamily, member 12A 72464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17764 TNFRSF13C tumor necrosis factor receptor superfamily, member 13C 61908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17765 TNFRSF14 tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator) 182476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17766 TNFRSF18 tumor necrosis factor receptor superfamily, member 18 112700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17767 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B 273796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17768 TNFRSF25 tumor necrosis factor receptor superfamily, member 25 214220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17769 TNFRSF6B tumor necrosis factor receptor superfamily, member 6b, decoy 123340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17770 TNFSF12-TNFSF13 TNFSF12-TNFSF13 188704 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17771 TNFSF9 tumor necrosis factor (ligand) superfamily, member 9 119028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17772 TNNC1 troponin C type 1 (slow) 114240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17773 TNNI2 troponin I type 2 (skeletal, fast) 108948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17774 TNNT1 troponin T type 1 (skeletal, slow) 183680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17775 TNNT3 troponin T type 3 (skeletal, fast) 190064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17776 TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) 102592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17777 TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) 189056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17778 TOMM5 38976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17779 TOMM7 translocase of outer mitochondrial membrane 7 homolog (yeast) 40320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17780 TOR1AIP2 torsin A interacting protein 2 409696 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17781 TOR1B torsin family 1, member B (torsin B) 213892 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17782 TOR2A torsin family 2, member A 186148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17783 TOX3 TOX high mobility group box family member 3 352752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17784 TP53I11 tumor protein p53 inducible protein 11 125848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17785 TP53I13 tumor protein p53 inducible protein 13 167972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17786 TP53INP2 tumor protein p53 inducible nuclear protein 2 116536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17787 TP73 tumor protein p73 326340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17788 TPPP3 tubulin polymerization-promoting protein family member 3 121632 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17789 TPRA1 244204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17790 TPRG1L tumor protein p63 regulated 1-like 139352 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17791 TPRKB TP53RK binding protein 121856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17792 TPSAB1 tryptase alpha/beta 1 134100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17793 TPSB2 tryptase beta 2 74340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17794 TPSG1 tryptase gamma 1 129280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17795 TPT1 tumor protein, translationally-controlled 1 121632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17796 TRA2A 193984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17797 TRAPPC1 trafficking protein particle complex 1 101696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17798 TRAPPC2 trafficking protein particle complex 2 98224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17799 TRAPPC2L trafficking protein particle complex 2-like 83960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17800 TRAPPC5 trafficking protein particle complex 5 97272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17801 TRAPPC6A trafficking protein particle complex 6A 110744 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17802 TRIAP1 TP53 regulated inhibitor of apoptosis 1 53536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17803 TRIM27 tripartite motif-containing 27 255556 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17804 TRIM34 tripartite motif-containing 34 337120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17805 TRIM47 tripartite motif-containing 47 271768 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17806 TRIM48 tripartite motif-containing 48 129556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17807 TRIM5 tripartite motif-containing 5 371616 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17808 TRIM61 tripartite motif-containing 61 116648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17809 TRIM65 tripartite motif-containing 65 206208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17810 TRIM74 tripartite motif-containing 74 145152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17811 TRIM8 tripartite motif-containing 8 323792 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17812 TRIP10 thyroid hormone receptor interactor 10 374920 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17813 TRMT2A 343016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17814 TRMT61A 151956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17815 TRPM5 transient receptor potential cation channel, subfamily M, member 5 535500 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17816 TRPT1 tRNA phosphotransferase 1 144468 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17817 TSN translin 159264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17818 TSPAN1 tetraspanin 1 168896 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17819 TSPAN12 tetraspanin 12 211904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17820 TSPAN31 tetraspanin 31 147168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17821 TSPAN32 tetraspanin 32 206856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17822 TSPAN4 tetraspanin 4 158816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17823 TSPO translocator protein (18kDa) 49672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17824 TSPY1 testis specific protein, Y-linked 1 67760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17825 TSPY2 testis specific protein, Y-linked 2 66360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17826 TTC16 tetratricopeptide repeat domain 16 528808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17827 TTC19 tetratricopeptide repeat domain 19 226072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17828 TTC36 67116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17829 TTC4 tetratricopeptide repeat domain 4 269696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17830 TTC9 tetratricopeptide repeat domain 9 68264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17831 TTC9C tetratricopeptide repeat domain 9C 118272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17832 TTLL10 tubulin tyrosine ligase-like family, member 10 250276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17833 TTLL12 tubulin tyrosine ligase-like family, member 12 361056 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17834 TUBA1A tubulin, alpha 1a 307328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17835 TUBB2C tubulin, beta 2C 228788 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17836 TULP1 tubby like protein 1 331548 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17837 TUSC2 tumor suppressor candidate 2 44940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17838 TWIST1 twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila) 68376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17839 TXN thioredoxin 75712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17840 TXN2 thioredoxin 2 114912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17841 TXNDC17 thioredoxin domain containing 17 86744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17842 TXNDC9 thioredoxin domain containing 9 156128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17843 TYSND1 trypsin domain containing 1 132456 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17844 TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) 180096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17845 U2AF1L4 U2 small nuclear RNA auxiliary factor 1-like 4 154784 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17846 UAP1 UDP-N-acteylglucosamine pyrophosphorylase 1 348096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17847 UBAP1 ubiquitin associated protein 1 344960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17848 UBC ubiquitin C 426468 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17849 UBD ubiquitin D 70840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17850 UBE2D2 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) 103376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17851 UBE2E3 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) 144088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17852 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 105896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17853 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 129920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17854 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 219100 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17855 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 141344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17856 UBE2L6 ubiquitin-conjugating enzyme E2L 6 107072 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17857 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 122640 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17858 UBE2N ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) 106400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17859 UBE2S ubiquitin-conjugating enzyme E2S 124068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17860 UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 118496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17861 UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 101696 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17862 UBE2W ubiquitin-conjugating enzyme E2W (putative) 98672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17863 UBE2Z ubiquitin-conjugating enzyme E2Z 172928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17864 UBL4A ubiquitin-like 4A 73472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17865 UBL5 ubiquitin-like 5 53312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17866 UBQLN4 ubiquilin 4 390252 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17867 UBXN1 216280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17868 UBXN8 178856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17869 UCK1 uridine-cytidine kinase 1 166992 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17870 UCKL1 uridine-cytidine kinase 1-like 1 289408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17871 UCN urocortin 29624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17872 UCN2 urocortin 2 64764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17873 UFC1 ubiquitin-fold modifier conjugating enzyme 1 118272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17874 UFM1 ubiquitin-fold modifier 1 63168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17875 UFSP1 UFM1-specific peptidase 1 (non-functional) 86156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17876 UGT2A2 UDP glucuronosyltransferase 2 family, polypeptide A2 360864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17877 ULBP3 UL16 binding protein 3 165416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17878 UNC119B unc-119 homolog B (C. elegans) 118272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17879 UNC93B1 unc-93 homolog B1 (C. elegans) 164092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17880 UPP1 uridine phosphorylase 1 215264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17881 UQCR10 53536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17882 UQCR11 32116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17883 UQCRHL 62720 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17884 UQCRQ ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa 57568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17885 URM1 ubiquitin related modifier 1 homolog (S. cerevisiae) 75264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17886 USE1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) 148040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17887 USMG5 upregulated during skeletal muscle growth 5 homolog (mouse) 41440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17888 UTP18 UTP18, small subunit (SSU) processome component, homolog (yeast) 354928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17889 UTS2 urotensin 2 116480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17890 UTS2D urotensin 2 domain containing 85120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17891 UTS2R urotensin 2 receptor 124392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17892 UXT ubiquitously-expressed transcript 119616 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17893 VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 81760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17894 VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 197540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17895 VAPB VAMP (vesicle-associated membrane protein)-associated protein B and C 169344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17896 VASH1 vasohibin 1 182680 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17897 VASH2 vasohibin 2 191504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17898 VASN vasorin 232400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17899 VAX1 ventral anterior homeobox 1 102872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17900 VAX2 ventral anterior homeobox 2 140252 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17901 VBP1 von Hippel-Lindau binding protein 1 125240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17902 VCX2 variable charge, X-linked 2 27580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17903 VDAC2 voltage-dependent anion channel 2 206304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17904 VEZF1 vascular endothelial zinc finger 1 347872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17905 VGLL2 vestigial like 2 (Drosophila) 104272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17906 VHLL von Hippel-Lindau tumor suppressor-like 94640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17907 VIP vasoactive intestinal peptide 119392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17908 VKORC1 vitamin K epoxide reductase complex, subunit 1 97888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17909 VMAC 55384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17910 VPS28 vacuolar protein sorting 28 homolog (S. cerevisiae) 149296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17911 VPS29 vacuolar protein sorting 29 homolog (S. cerevisiae) 130144 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17912 VPS37A vacuolar protein sorting 37 homolog A (S. cerevisiae) 259504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17913 VPS37D vacuolar protein sorting 37 homolog D (S. cerevisiae) 73912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17914 VSNL1 visinin-like 1 131712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17915 VSTM2L V-set and transmembrane domain containing 2 like 94880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17916 WBP2 WW domain binding protein 2 162016 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17917 WBSCR16 Williams-Beuren syndrome chromosome region 16 120696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17918 WBSCR27 Williams Beuren syndrome chromosome region 27 163200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17919 WBSCR28 Williams-Beuren syndrome chromosome region 28 181440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17920 WDR18 WD repeat domain 18 173516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17921 WDR24 WD repeat domain 24 395888 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17922 WDR37 WD repeat domain 37 344288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17923 WDR81 WD repeat domain 81 459836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17924 WDR82 WD repeat domain 82 217644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17925 WDR83 217812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17926 WDR85 WD repeat domain 85 277228 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17927 WFDC10A WAP four-disulfide core domain 10A 55552 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17928 WFDC10B WAP four-disulfide core domain 10B 84448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17929 WFDC11 WAP four-disulfide core domain 11 61824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17930 WFDC13 WAP four-disulfide core domain 13 65856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17931 WFDC2 WAP four-disulfide core domain 2 86688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17932 WFDC6 WAP four-disulfide core domain 6 61152 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17933 WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 151032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17934 WISP2 WNT1 inducible signaling pathway protein 2 159124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17935 WNT10A wingless-type MMTV integration site family, member 10A 203084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17936 WNT5B wingless-type MMTV integration site family, member 5B 225512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17937 WNT8B wingless-type MMTV integration site family, member 8B 207088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17938 WRAP53 377888 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17939 WRB tryptophan rich basic protein 122080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17940 WSB1 WD repeat and SOCS box-containing 1 291648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17941 XAGE3 X antigen family, member 3 78848 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17942 XAGE5 X antigen family, member 5 76832 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17943 XCL1 chemokine (C motif) ligand 1 79968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17944 XK X-linked Kx blood group (McLeod syndrome) 293216 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17945 XKR5 XK, Kell blood group complex subunit-related family, member 5 204680 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17946 YDJC YdjC homolog (bacterial) 75936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17947 YEATS4 YEATS domain containing 4 159488 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17948 YIPF2 Yip1 domain family, member 2 214112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17949 YIPF4 Yip1 domain family, member 4 158728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17950 YJEFN3 166232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17951 YPEL3 yippee-like 3 (Drosophila) 109676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17952 YPEL4 yippee-like 4 (Drosophila) 88240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17953 YPEL5 yippee-like 5 (Drosophila) 83692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17954 YRDC yrdC domain containing (E. coli) 104608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17955 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 160804 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17956 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 161308 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17957 ZBTB10 zinc finger and BTB domain containing 10 416332 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17958 ZBTB12 zinc finger and BTB domain containing 12 245420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17959 ZBTB2 zinc finger and BTB domain containing 2 347872 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17960 ZBTB45 zinc finger and BTB domain containing 45 275128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17961 ZBTB47 zinc finger and BTB domain containing 47 199860 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17962 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 127232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17963 ZBTB9 zinc finger and BTB domain containing 9 312284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17964 ZC3H3 zinc finger CCCH-type containing 3 466800 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17965 ZCCHC10 zinc finger, CCHC domain containing 10 118496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17966 ZCCHC13 zinc finger, CCHC domain containing 13 113120 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17967 ZDHHC12 zinc finger, DHHC-type containing 12 171008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17968 ZDHHC13 zinc finger, DHHC-type containing 13 390632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17969 ZDHHC22 zinc finger, DHHC-type containing 22 160132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17970 ZFAND1 zinc finger, AN1-type domain 1 176592 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17971 ZFAND2A zinc finger, AN1-type domain 2A 101696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17972 ZFAND2B zinc finger, AN1-type domain 2B 181440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17973 ZFAND5 zinc finger, AN1-type domain 5 148288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17974 ZFAND6 zinc finger, AN1-type domain 6 144928 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17975 ZFP41 zinc finger protein 41 homolog (mouse) 134540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17976 ZFPM1 zinc finger protein, multitype 1 205212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17977 ZFR2 zinc finger RNA binding protein 2 397852 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -17978 ZFYVE19 zinc finger, FYVE domain containing 19 321192 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17979 ZG16B 143896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17980 ZGLP1 171272 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17981 ZGPAT zinc finger, CCCH-type with G patch domain 321888 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17982 ZIC5 Zic family member 5 (odd-paired homolog, Drosophila) 180796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17983 ZMYND10 zinc finger, MYND-type containing 10 306684 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17984 ZMYND12 zinc finger, MYND-type containing 12 253120 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17985 ZNF131 zinc finger protein 131 402752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17986 ZNF155 zinc finger protein 155 365792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17987 ZNF193 zinc finger protein 193 268128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17988 ZNF232 zinc finger protein 232 302540 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17989 ZNF250 zinc finger protein 250 379904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17990 ZNF296 263256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17991 ZNF322A zinc finger protein 322A 212996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17992 ZNF358 zinc finger protein 358 248388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17993 ZNF383 zinc finger protein 383 322868 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17994 ZNF384 zinc finger protein 384 396396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17995 ZNF397OS zinc finger protein 397 opposite strand 329364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17996 ZNF414 zinc finger protein 414 106148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17997 ZNF444 zinc finger protein 444 57932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17998 ZNF48 zinc finger protein 48 387576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17999 ZNF497 zinc finger protein 497 166600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18000 ZNF503 zinc finger protein 503 244056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18001 ZNF512 zinc finger protein 512 394240 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -18002 ZNF550 zinc finger protein 550 258496 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -18003 ZNF576 zinc finger protein 576 116704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18004 ZNF580 zinc finger protein 580 36820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18005 ZNF598 zinc finger protein 598 355824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18006 ZNF668 zinc finger protein 668 402220 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -18007 ZNF672 zinc finger protein 672 181552 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -18008 ZNF682 zinc finger protein 682 338912 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -18009 ZNF684 zinc finger protein 684 258272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18010 ZNF696 zinc finger protein 696 126952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18011 ZNF704 zinc finger protein 704 270088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18012 ZNF705D zinc finger protein 705D 66024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18013 ZNF707 zinc finger protein 707 197932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18014 ZNF740 zinc finger protein 740 135744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18015 ZNF747 zinc finger protein 747 69720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18016 ZNF764 zinc finger protein 764 215600 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -18017 ZNF775 zinc finger protein 775 156520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18018 ZNF784 zinc finger protein 784 124852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18019 ZNF785 zinc finger protein 785 247744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18020 ZNF787 zinc finger protein 787 86072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18021 ZNF8 zinc finger protein 8 383096 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -18022 ZNF816A zinc finger protein 816A 440832 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -18023 ZNHIT3 zinc finger, HIT type 3 109312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18024 ZNRD1 zinc ribbon domain containing 1 55580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18025 ZNRF1 zinc and ring finger 1 83352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18026 ZNRF2 zinc and ring finger 2 66948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18027 ZNRF3 zinc and ring finger 3 465640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18028 ZSCAN10 zinc finger and SCAN domain containing 10 308060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18029 ZSWIM7 zinc finger, SWIM-type containing 7 89152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -18030 ZXDB zinc finger, X-linked, duplicated B 388668 0 0 0 1 0 0 0 0 0 0 1.00 1.00 diff --git a/core/src/test/resources/data_structural_variants.txt b/core/src/test/resources/data_structural_variants.txt deleted file mode 100644 index 15280102a74..00000000000 --- a/core/src/test/resources/data_structural_variants.txt +++ /dev/null @@ -1,6 +0,0 @@ -Sample_Id Site1_Entrez_Gene_Id Site1_Hugo_Symbol Site1_Contig Site1_Region Site1_Region_Number Site1_Ensembl_Transcript_Id Site1_Chromosome Site1_Position Site1_Description Site2_Entrez_Gene_Id Site2_Hugo_Symbol Site2_Contig Site2_Region Site2_Region_Number Site2_Ensembl_Transcript_Id Site2_Chromosome Site2_Position Site2_Description Site2_Effect_On_Frame NCBI_Build DNA_Support RNA_Support Normal_Read_Count Tumor_Read_Count Normal_Variant_Count Tumor_Variant_Count Normal_Paired_End_Read_Count Tumor_Paired_End_Read_Count Normal_Split_Read_Count Tumor_Split_Read_Count Annotation Breakpoint_Type Connection_Type Event_Info Class SV_Length Comments cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation SV_Status StructVarNamespace.column1 StructVarNamespace.column2 StructVarNamespace2.foo -TCGA-A1-A0SB-01 NA KIAA1549 p11.2 intron 5 ENST00000242365 7 138536968 KIAA1549-BRAF.K16B10.COSF509_1 NA BRAF q14.1 exon 2 ENST00000288602 7 140482957 KIAA1549-BRAF.K16B10.COSF509_2 NA GRCh37 no yes NA 1000 NA 900 NA NA NA NA KIAA1549-BRAF.K16B10.COSF509 NA NA Fusion NA NA Gain-of-Function testdriver testdriveranno testdrivertiers testdrivertiersanno SOMATIC -TCGA-A1-A0SD-01 NA EML4 p11.2 intron 5 ENST00000318522 2 42522656 EML4-ALK.E13A20.AB462411_1 NA ALK q14.1 exon 2 ENST00000389048 2 29446335 EML4-ALK.E13A20.AB462411_2 NA GRCh37 no yes NA 1006 NA 300 NA NA NA NA EML4-ALK.E13A20 NA NA Fusion NA NA Gain-of-Function NA NA NA NA SOMATIC value1a value2a bar -TCGA-A1-A0SB-02 100781 p11.2 intron 5 ENST00000242365 7 138536968 KIAA1549-BRAF.K16B10.COSF509_1 673 q14.1 exon 2 ENST00000288602 7 140482957 KIAA1549-BRAF.K16B10.COSF509_2 NA GRCh37 no yes NA 1000 NA 900 NA NA NA NA KIAA1549-BRAF.K16B10.COSF509 NA NA Fusion NA NA Gain-of-Function testdriver testdriveranno testdrivertiers testdrivertiersanno SOMATIC -TCGA-A1-A0SB-02 673 p11.2 intron 5 ENST00000242365 7 138536968 KIAA1549-BRAF.K16B10.COSF509_1 100781 q14.1 exon 2 ENST00000288602 7 140482957 KIAA1549-BRAF.K16B10.COSF509_2 NA GRCh37 no yes NA 1000 NA 900 NA NA NA NA KIAA1549-BRAF.K16B10.COSF509 NA NA Fusion NA NA Gain-of-Function testdriver testdriveranno testdrivertiers testdrivertiersanno SOMATIC -TCGA-A1-A0SB-02 110384692 AKT1 p11.2 intron 5 ENST00000242365 7 138536968 AKT1-BRAF.K16B10.COSF509_1 100781 q14.1 exon 2 ENST00000288602 7 140482957 AKT1-BRAF.K16B10.COSF509_2 NA GRCh37 no yes NA 1000 NA 900 NA NA NA NA AKT1-BRAF.K16B10.COSF509 NA NA Fusion NA NA Gain-of-Function testdriver testdriveranno testdrivertiers testdrivertiersanno SOMATIC \ No newline at end of file diff --git a/core/src/test/resources/data_structural_variants_with_no_namespace_data.txt b/core/src/test/resources/data_structural_variants_with_no_namespace_data.txt deleted file mode 100644 index b11b485cee8..00000000000 --- a/core/src/test/resources/data_structural_variants_with_no_namespace_data.txt +++ /dev/null @@ -1,2 +0,0 @@ -Sample_Id Site1_Entrez_Gene_Id Site1_Hugo_Symbol Site1_Contig Site1_Region Site1_Region_Number Site1_Ensembl_Transcript_Id Site1_Chromosome Site1_Position Site1_Description Site2_Entrez_Gene_Id Site2_Hugo_Symbol Site2_Contig Site2_Region Site2_Region_Number Site2_Ensembl_Transcript_Id Site2_Chromosome Site2_Position Site2_Description Site2_Effect_On_Frame NCBI_Build DNA_Support RNA_Support Normal_Read_Count Tumor_Read_Count Normal_Variant_Count Tumor_Variant_Count Normal_Paired_End_Read_Count Tumor_Paired_End_Read_Count Normal_Split_Read_Count Tumor_Split_Read_Count Annotation Breakpoint_Type Connection_Type Event_Info Class SV_Length Comments cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation SV_Status -TCGA-A1-A0SD-01 NA EML4 p11.2 intron 5 ENST00000318522 2 42522656 EML4-ALK.E13A20.AB462411_1 NA ALK q14.1 exon 2 ENST00000389048 2 29446335 EML4-ALK.E13A20.AB462411_2 NA GRCh37 no yes NA 1006 NA 300 NA NA NA NA EML4-ALK.E13A20 NA NA Fusion NA NA Gain-of-Function NA NA NA NA SOMATIC diff --git a/core/src/test/resources/data_structural_variants_with_unspecified_namespace.txt b/core/src/test/resources/data_structural_variants_with_unspecified_namespace.txt deleted file mode 100644 index 79d9e0c0943..00000000000 --- a/core/src/test/resources/data_structural_variants_with_unspecified_namespace.txt +++ /dev/null @@ -1,2 +0,0 @@ -Sample_Id Site1_Entrez_Gene_Id Site1_Hugo_Symbol Site1_Contig Site1_Region Site1_Region_Number Site1_Ensembl_Transcript_Id Site1_Chromosome Site1_Position Site1_Description Site2_Entrez_Gene_Id Site2_Hugo_Symbol Site2_Contig Site2_Region Site2_Region_Number Site2_Ensembl_Transcript_Id Site2_Chromosome Site2_Position Site2_Description Site2_Effect_On_Frame NCBI_Build DNA_Support RNA_Support Normal_Read_Count Tumor_Read_Count Normal_Variant_Count Tumor_Variant_Count Normal_Paired_End_Read_Count Tumor_Paired_End_Read_Count Normal_Split_Read_Count Tumor_Split_Read_Count Annotation Breakpoint_Type Connection_Type Event_Info Class SV_Length Comments cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation SV_Status StructVarNamespace.column1 StructVarNamespace.column2 StructVarNamespace2.foo FaultyStructVarNamespace.shouldNotBeImported -TCGA-A1-A0SD-01 NA EML4 p11.2 intron 5 ENST00000318522 2 42522656 EML4-ALK.E13A20.AB462411_1 NA ALK q14.1 exon 2 ENST00000389048 2 29446335 EML4-ALK.E13A20.AB462411_2 NA GRCh37 no yes NA 1006 NA 300 NA NA NA NA EML4-ALK.E13A20 NA NA Fusion NA NA Gain-of-Function NA NA NA NA SOMATIC value1a value2a bar ignored diff --git a/core/src/test/resources/demoScript.xml b/core/src/test/resources/demoScript.xml deleted file mode 100644 index 5cbac5c219b..00000000000 --- a/core/src/test/resources/demoScript.xml +++ /dev/null @@ -1,46 +0,0 @@ - - - - - - - - - - - - org.mskcc.cbio.portal.scripts.ImportCancerStudy - src/test/resources/cancer_study.txt - - - - - org.mskcc.cbio.portal.scripts.ImportClinicalData - --data - src/test/resources/clinical_data.txt - --meta - src/test/resources/clinical_meta.txt - --study - test_brca - --loadMode - bulkLoad - - - - - - \ No newline at end of file diff --git a/core/src/test/resources/dna_repair.txt b/core/src/test/resources/dna_repair.txt deleted file mode 100644 index 39f7fe2482b..00000000000 --- a/core/src/test/resources/dna_repair.txt +++ /dev/null @@ -1,157 +0,0 @@ -7486 -7157 -2074 -328 -6996 -4968 -4350 -23583 -10309 -7374 -79661 -2073 -1161 -2071 -56949 -2068 -2067 -2072 -4913 -5886 -64210 -27343 -675 -4287 -8846 -10111 -83990 -23064 -4683 -2237 -10524 -6647 -10519 -5885 -7415 -11044 -2956 -4595 -5422 -5426 -5424 -5429 -5983 -10714 -1032 -56897 -3148 -100130561 -3146 -8930 -7518 -3981 -7141 -54840 -672 -7334 -1054 -387522 -7336 -4436 -55339 -7320 -7319 -5888 -4221 -641 -3978 -143 -142 -5889 -5890 -3980 -9401 -9400 -546 -25842 -5976 -23054 -8243 -7153 -2189 -56852 -11284 -5810 -10635 -11232 -6117 -2968 -10432 -5427 -11201 -23411 -5965 -10856 -1454 -472 -7298 -1137 -10912 -3364 -2965 -10039 -2176 -7832 -545 -7341 -5884 -1453 -5932 -5111 -5984 -2175 -4331 -11219 -5883 -51065 -55775 -5985 -84268 -1647 -51426 -7405 -7516 -7517 -6188 -25 -4437 -9156 -5395 -5378 -27030 -4292 -11277 -7161 -4439 -5428 -51455 -5582 -6118 -6119 -5981 -5982 -5425 -100128414 -1642 -1643 -7508 -2967 -7507 -5887 -2966 -1022 -902 -4361 -2547 -91419 -79840 \ No newline at end of file diff --git a/core/src/test/resources/gene-length_test.txt b/core/src/test/resources/gene-length_test.txt deleted file mode 100644 index 9793fb53abc..00000000000 --- a/core/src/test/resources/gene-length_test.txt +++ /dev/null @@ -1,12 +0,0 @@ -chr6 HAVANA exon 10000 11000 . + . gene_id "ENSG00000111111.5"; transcript_id "ENST00000450305.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "AGER"; transcript_type "transcribed_unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "DDX11L1-001"; exon_number 5; exon_id "ENSE00001746346.2"; level 2; ont "PGO:0000005"; ont "PGO:0000019"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000000961.2"; havana_transcript "OTTHUMT00000002844.2"; remap_original_location "chr1:+:13221-13374"; remap_status "full_contig"; -chr1 HAVANA exon 13221 13374 . + . gene_id "ENSG00000223972.5"; transcript_id "ENST00000450305.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "ABCA4"; transcript_type "transcribed_unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "DDX11L1-001"; exon_number 5; exon_id "ENSE00001746346.2"; level 2; ont "PGO:0000005"; ont "PGO:0000019"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000000961.2"; havana_transcript "OTTHUMT00000002844.2"; remap_original_location "chr1:+:13221-13374"; remap_status "full_contig"; -chr1 HAVANA exon 13453 13670 . + . gene_id "ENSG00000223972.5"; transcript_id "ENST00000450305.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "ABCA4"; transcript_type "transcribed_unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "DDX11L1-001"; exon_number 6; exon_id "ENSE00001863096.1"; level 2; ont "PGO:0000005"; ont "PGO:0000019"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000000961.2"; havana_transcript "OTTHUMT00000002844.2"; remap_original_location "chr1:+:13453-13670"; remap_status "full_contig"; -chr8 HAVANA exon 13404 29570 . - . gene_id "ENSG00000227232.5"; gene_type "unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "AACP"; level 2; havana_gene "OTTHUMG00000000958.1"; remap_status "full_contig"; remap_num_mappings 1; remap_target_status "overlap"; -chr8 HAVANA transcript 29671 29770 . - . gene_id "ENSG00000227232.5"; transcript_id "ENST00000488147.1"; gene_type "unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "AACP"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "WASH7P-001"; level 2; ont "PGO:0000005"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000000958.1"; havana_transcript "OTTHUMT00000002839.1"; remap_num_mappings 1; remap_status "full_contig"; remap_target_status "overlap"; -chr8 HAVANA exon 29524 29570 . - . gene_id "ENSG00000227232.5"; transcript_id "ENST00000488147.1"; gene_type "unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "AACP"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "WASH7P-001"; exon_number 1; exon_id "ENSE00001890219.1"; level 2; ont "PGO:0000005"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000000958.1"; havana_transcript "OTTHUMT00000002839.1"; remap_original_location "chr1:-:29534-29570"; remap_status "full_contig"; -chr8 HAVANA exon 29534 29670 . - . gene_id "ENSG00000227232.5"; transcript_id "ENST00000488147.1"; gene_type "unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "AACP"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "WASH7P-001"; exon_number 1; exon_id "ENSE00001890219.1"; level 2; ont "PGO:0000005"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000000958.1"; havana_transcript "OTTHUMT00000002839.1"; remap_original_location "chr1:-:29534-29570"; remap_status "full_contig"; -chr16 HAVANA exon 227615 228776 . - . gene_id "ENSG00000228463.9"; transcript_id "ENST00000442116.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "AARS"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "AP006222.2-003"; exon_number 2; exon_id "ENSE00001677641.1"; level 2; transcript_support_level 5; havana_gene "OTTHUMG00000002553.3"; havana_transcript "OTTHUMT00000007244.1"; remap_original_location "chr1:-:257864-259025"; remap_status "full_contig"; -chr16 HAVANA exon 327615 328777 . - . gene_id "ENSG00000228464.9"; transcript_id "ENST00000442116.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "AARS"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "AP006222.2-003"; exon_number 2; exon_id "ENSE00001677641.1"; level 2; transcript_support_level 5; havana_gene "OTTHUMG00000002553.3"; havana_transcript "OTTHUMT00000007244.1"; remap_original_location "chr1:-:257864-259025"; remap_status "full_contig"; -chr2 HAVANA exon 427615 428778 . - . gene_id "ENSG00000228465.9"; transcript_id "ENST00000442116.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "AARS"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "AP006222.2-003"; exon_number 2; exon_id "ENSE00001677641.1"; level 2; transcript_support_level 5; havana_gene "OTTHUMG00000002553.3"; havana_transcript "OTTHUMT00000007244.1"; remap_original_location "chr1:-:257864-259025"; remap_status "full_contig"; -chr3 HAVANA exon 450000 450100 . - . gene_id "ENSG00000333336.9"; transcript_id "ENST00000442116.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "MED28P8"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "AP006222.2-003"; exon_number 2; exon_id "ENSE00001677641.1"; level 2; transcript_support_level 5; havana_gene "OTTHUMG00000002553.3"; havana_transcript "OTTHUMT00000007244.1"; remap_original_location "chr1:-:257864-259025"; remap_status "full_contig"; -chr4 HAVANA exon 550000 550200 . - . gene_id "ENSG00000333337.9"; transcript_id "ENST00000442116.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "MED28P8"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "AP006222.2-003"; exon_number 2; exon_id "ENSE00001677641.1"; level 2; transcript_support_level 5; havana_gene "OTTHUMG00000002553.3"; havana_transcript "OTTHUMT00000007244.1"; remap_original_location "chr1:-:257864-259025"; remap_status "full_contig"; diff --git a/core/src/test/resources/gene_set_test.txt b/core/src/test/resources/gene_set_test.txt deleted file mode 100644 index 59784fd7166..00000000000 --- a/core/src/test/resources/gene_set_test.txt +++ /dev/null @@ -1,15 +0,0 @@ -@title=Sample Title -!Sample Gene Set 1 -AKT1 -AKT2 -AKT3 -!Sample Gene Set 2 -ARAF -ATM -!Sample Gene Set 3 -BRAF -BRCA1 -BRCA2 -!Sample Gene Set 4 -BRCA1 -RAS = HRAS, NRAS, KRAS diff --git a/core/src/test/resources/gene_sets.txt b/core/src/test/resources/gene_sets.txt deleted file mode 100644 index 355b40facba..00000000000 --- a/core/src/test/resources/gene_sets.txt +++ /dev/null @@ -1,22 +0,0 @@ -Prostate Cancer: AR Signaling=SOX9 RAN TNK2 EP300 PXN NCOA2 AR NRIP1 NCOR1 NCOR2 -Prostate Cancer: AR and steroid synthesis enzymes=AKR1C3 AR CYB5A CYP11A1 CYP11B1 CYP11B2 CYP17A1 CYP19A1 CYP21A2 HSD17B1 HSD17B10 HSD17B11 HSD17B12 HSD17B13 HSD17B14 HSD17B2 HSD17B3 HSD17B4 HSD17B6 HSD17B7 HSD17B8 HSD3B1 HSD3B2 HSD3B7 RDH5 SHBG SRD5A1 SRD5A2 SRD5A3 STAR -Prostate Cancer: Steroid inactivating genes=AKR1C1 AKR1C2 AKR1C4 CYP3A4 CYP3A43 CYP3A5 CYP3A7 UGT2B15 UGT2B17 UGT2B7 -Prostate Cancer: Down-regulated by androgen=BCHE CDK8 CTBP1 CXCR7 DDC DPH1 FN1 HES6 MMP16 MYC PEG3 PIK3R3 PRKD1 SCNN1A SDC4 SERPINI1 SLC29A1 ST7 TULP4 -Glioblastoma: TP53 Pathway=CDKN2A MDM2 MDM4 TP53 -Glioblastoma: RTK/Ras/PI3K/AKT Signaling=EGFR ERBB2 PDGFRA MET KRAS NRAS HRAS NF1 SPRY2 FOXO1 FOXO3 AKT1 AKT2 AKT3 PIK3R1 PIK3CA PTEN -Glioblastoma: RB Pathway=CDKN2A CDKN2B CDKN2C CDK4 CDK6 CCND2 RB1 -Ovarian Cancer: Oncogenes associated with epithelial ovarian cancer=RAB25 EVI1 EIF5A2 PRKCI PIK3CA KIT FGF1 MYC EGFR NOTCH3 KRAS AKT1 ERBB2 PIK3R1 CCNE1 AKT2 AURKA -Ovarian Cancer: Putative tumor-suppressor genes in epithelial ovarian cancer=DIRAS3 RASSF1 DLEC1 SPARC DAB2 PLAGL1 RPS6KA2 PTEN OPCML BRCA2 ARL11 WWOX TP53 DPH1 BRCA1 PEG3 -General: Cell Cycle Control=RB1 RBL1 RBL2 CCNA1 CCNB1 CDC2 CCNE1 CDK2 CDC25A CCND1 CDK4 CDK6 CCND2 CDKN2A CDKN2B MYC CDKN1A CDKN1B E2F1 E2F2 E2F3 E2F4 E2F5 E2F6 E2F7 E2F8 SRC JAK1 JAK2 STAT1 STAT2 STAT3 STAT5A STAT5B -General: p53 signaling=TP53 MDM2 MDM4 CDKN2A CDKN2B TP53BP1 -General: DNA Damage Response=CHEK1 CHEK2 RAD51 BRCA1 BRCA2 MLH1 MSH2 ATM ATR MDC1 PARP1 FANCF -General: Other growth / proliferation signaling=CSF1 CSF1R IGF1 IGF1R FGF1 FGFR1 AURKA DLEC1 PLAGL1 OPCML DPH1 -General: Survival / cell death regulation signaling=NFKB1 NFKB2 CHUK DIRAS3 FAS HLA-G BAD BCL2 BCL2L1 APAF1 CASP9 CASP8 CASP10 CASP3 CASP6 CASP7 GSK3B ARL11 WWOX PEG3 TGFB1 TGFBR1 TGFBR2 -General: Telomere maintenance=TERC TERT -General: RTK signaling family=EGFR ERBB2 ERBB3 ERBB4 PDGFA PDGFB PDGFRA PDGFRB KIT FGF1 FGFR1 IGF1 IGF1R VEGFA VEGFB KDR -General: PI3K-AKT-mTOR signaling=PIK3CA PIK3R1 PIK3R2 PTEN PDPK1 AKT1 AKT2 FOXO1 FOXO3 FRAP1 RICTOR TSC1 TSC2 RHEB AKT1S1 KIAA1303 GBL -General: Ras-Raf-MEK-Erk/JNK signaling=KRAS HRAS BRAF RAF1 MAP3K1 MAP3K2 MAP3K3 MAP3K4 MAP3K5 MAP2K1 MAP2K2 MAP2K3 MAP2K4 MAP2K5 MAPK1 MAPK3 MAPK4 MAPK6 MAPK7 MAPK8 MAPK9 MAPK12 MAPK14 DAB2 RASSF1 RAB25 -General: Regulation of ribosomal protein synthesis and cell growth=RPS6KA1 RPS6KA2 RPS6KB1 RPS6KB2 EIF5A2 EIF4E EIF4EBP1 RPS6 HIF1A -General: Angiogenesis=VEGFA VEGFB KDR IL8 IL8RA IL8RB -General: Folate transport=SLC19A1 FOLR1 FOLR2 FOLR3 FOLR4 -General: Invasion and metastasis=MMP1 MMP2 MMP3 MMP7 MMP9 MMP10 MMP11 MMP12 MMP13 MMP14 MMP15 MMP16 MMP17 MMP19 MMP21 MMP23B MMP24 MMP25 MMP26 MMP27 MMP28 ITGB3 ITGAV PTK2 CDH1 SPARC WFDC2 diff --git a/core/src/test/resources/genes_test.txt b/core/src/test/resources/genes_test.txt deleted file mode 100644 index 03e84e05821..00000000000 --- a/core/src/test/resources/genes_test.txt +++ /dev/null @@ -1,22 +0,0 @@ -#tax_id GeneID Symbol LocusTag Synonyms dbXrefs chromosome map_location description type_of_gene Symbol_from_nomenclature_authority Full_name_from_nomenclature_authority Nomenclature_status Other_designations Modification_date -9606 1 A1BG - A1B|ABG|GAB|HYST2477 HGNC:5|MIM:138670|Ensembl:ENSG00000121410|HPRD:00726 19 19q13.4 alpha-1-B glycoprotein protein-coding A1BG alpha-1-B glycoprotein O alpha-1B-glycoprotein 20121230 -9606 2 A2M - A2MD|CPAMD5|FWP007|S863-7 HGNC:7|MIM:103950|Ensembl:ENSG00000175899|HPRD:00072|Vega:OTTHUMG00000150267 12 12p13.31 alpha-2-macroglobulin protein-coding A2M alpha-2-macroglobulin O C3 and PZP-like alpha-2-macroglobulin domain-containing protein 5|alpha-2-M 20121230 -9606 3 A2MP1 - A2MP HGNC:8 12 12p13.31 alpha-2-macroglobulin pseudogene 1 pseudo A2MP1 alpha-2-macroglobulin pseudogene 1 O - 20121230 -9606 9 NAT1 - AAC1|MNAT|NAT-1|NATI HGNC:7645|MIM:108345|Ensembl:ENSG00000171428|HPRD:00149|Vega:OTTHUMG00000097001 8 8p22 N-acetyltransferase 1 (arylamine N-acetyltransferase) protein-coding NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase) O N-acetyltransferase type 1|arylamide acetylase 1|arylamine N-acetyltransferase 1|monomorphic arylamine N-acetyltransferase 20121230 -9606 10 NAT2 - AAC2|NAT-2|PNAT HGNC:7646|MIM:612182|Ensembl:ENSG00000156006|HPRD:02000|Vega:OTTHUMG00000130826 8 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) protein-coding NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) O N-acetyltransferase type 2|arylamide acetylase 2|arylamine N-acetyltransferase 2 20121230 -9606 11 AACP - NATP HGNC:15 8 8p22 arylamide acetylase pseudogene pseudo AACP arylamide acetylase pseudogene O - 20121230 -9606 12 SERPINA3 GIG24 AACT|ACT|GIG25 HGNC:16|MIM:107280|Ensembl:ENSG00000196136|HPRD:00120|Vega:OTTHUMG00000029851 14 14q32.1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 protein-coding SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 O alpha-1-antichymotrypsin|cell growth-inhibiting gene 24/25 protein|growth-inhibiting protein 24|growth-inhibiting protein 25|serine (or cysteine) proteinase inhibitor, clade A, member 3|serpin A3 20121230 -9606 13 AADAC - CES5A1|DAC HGNC:17|MIM:600338|Ensembl:ENSG00000114771|HPRD:02640|Vega:OTTHUMG00000159876 3 3q25.1 arylacetamide deacetylase protein-coding AADAC arylacetamide deacetylase O arylacetamide deacetylase (esterase) 20121230 -9606 14 AAMP - - HGNC:18|MIM:603488|Ensembl:ENSG00000127837|HPRD:04600|Vega:OTTHUMG00000155202 2 2q35 angio-associated, migratory cell protein protein-coding AAMP angio-associated, migratory cell protein O angio-associated migratory cell protein 20121230 -9606 15 AANAT - DSPS|SNAT HGNC:19|MIM:600950|Ensembl:ENSG00000129673|HPRD:02974|Vega:OTTHUMG00000180179 17 17q25 aralkylamine N-acetyltransferase protein-coding AANAT aralkylamine N-acetyltransferase O arylalkylamine N-acetyltransferase|serotonin N-acetyltransferase|serotonin acetylase 20121230 -9606 16 AARS - CMT2N HGNC:20|MIM:601065|Ensembl:ENSG00000090861|HPRD:03042|Vega:OTTHUMG00000177042 16 16q22 alanyl-tRNA synthetase protein-coding AARS alanyl-tRNA synthetase O alaRS|alanine tRNA ligase 1, cytoplasmic|alanine--tRNA ligase, cytoplasmic|alanyl-tRNA synthetase, cytoplasmic|renal carcinoma antigen NY-REN-42 20121230 -9606 17 AAVS1 - AAV HGNC:22|MIM:102699 19 19q13|19q13-qter adeno-associated virus integration site 1 other AAVS1 adeno-associated virus integration site 1 O - 20111027 -9606 18 ABAT hCG_1984265 GABA-AT|GABAT|NPD009 HGNC:23|MIM:137150|Ensembl:ENSG00000183044|HPRD:00661|Vega:OTTHUMG00000048201 16 16p13.2 4-aminobutyrate aminotransferase protein-coding ABAT 4-aminobutyrate aminotransferase O (S)-3-amino-2-methylpropionate transaminase|4-aminobutyrate aminotransferase, mitochondrial|4-aminobutyrate transaminase|GABA aminotransferase|GABA transaminase|GABA transferase|gamma-amino-N-butyrate transaminase 20121230 -9606 19 ABCA1 - ABC-1|ABC1|CERP|HDLDT1|TGD HGNC:29|MIM:600046|Ensembl:ENSG00000165029|HPRD:02501|Vega:OTTHUMG00000020417 9 9q31.1 ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 O ATP-binding cassette sub-family A member 1|ATP-binding cassette transporter A1|cholesterol efflux regulatory protein|membrane-bound 20121230 -9606 20 ABCA2 RP11-229P13.8 ABC2 HGNC:32|MIM:600047|Ensembl:ENSG00000107331|HPRD:08967|Vega:OTTHUMG00000020958 9 9q34 ATP-binding cassette, sub-family A (ABC1), member 2 protein-coding ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 O ATP-binding cassette 2|ATP-binding cassette sub-family A member 2|ATP-binding cassette transporter 2|ATP-binding cassette, sub-family A, member 2 20121230 -9606 21 ABCA3 - ABC-C|ABC3|EST111653|LBM180|SMDP3 HGNC:33|MIM:601615|Ensembl:ENSG00000167972|HPRD:03369|Vega:OTTHUMG00000128845 16 16p13.3 ATP-binding cassette, sub-family A (ABC1), member 3 protein-coding ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3 O ABC transporter 3|ABC-C transporter|ATP-binding cassette sub-family A member 3|ATP-binding cassette transporter 3 20121230 -9606 22 ABCB7 - ABC7|ASAT|Atm1p|EST140535 HGNC:48|MIM:300135|Ensembl:ENSG00000131269|HPRD:02137|Vega:OTTHUMG00000021862 X Xq13.3 ATP-binding cassette, sub-family B (MDR/TAP), member 7 protein-coding ABCB7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 O ABC transporter 7 protein|ATP-binding cassette sub-family B member 7, mitochondrial|ATP-binding cassette transporter 7 20121230 -9606 23 ABCF1 DADB-129D20.7 ABC27|ABC50 HGNC:70|MIM:603429|Ensembl:ENSG00000204574|HPRD:09139|Vega:OTTHUMG00000031094 6 6p21.33 ATP-binding cassette, sub-family F (GCN20), member 1 protein-coding ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 O ATP-binding cassette 50 (TNF-alpha stimulated)|ATP-binding cassette sub-family F member 1|TNF-alpha-stimulated ABC protein|TNFalpha-inducible ATP-binding protein 20121230 -9606 24 ABCA4 - ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 HGNC:34|MIM:601691|Ensembl:ENSG00000198691|HPRD:03408|Vega:OTTHUMG00000010622 1 1p22 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 O ATP binding cassette transporter|ATP-binding cassette sub-family A member 4|ATP-binding cassette transporter, retinal-specific|ATP-binding transporter, retina-specific|RIM ABC transporter|RIM protein|photoreceptor rim protein|retina-specific ABC transporter|retinal-specific ATP-binding cassette transporter|stargardt disease protein 20121230 -9606 25 MED28P8 - - HGNC:HGNC:45085 1 - mediator complex subunit 28 pseudogene 8 pseudo MED28P8 mediator complex subunit 28 pseudogene 8 O - 20160730 -9606 26 AGER - RAGE|SCARJ1 MIM:600214|HGNC:HGNC:320|Ensembl:ENSG00000204305|HPRD:02568|Vega:OTTHUMG00000031120 6 6p21.3 advanced glycosylation end-product specific receptor protein-coding AGER advanced glycosylation end-product specific receptor O advanced glycosylation end product-specific receptor|RAGE isoform NtRAGE-delta|RAGE isoform sRAGE-delta|receptor for advanced glycation end-products variant 20 20160904 diff --git a/core/src/test/resources/genesets/unit-test-geneset-hierarchy_genesets.gmt b/core/src/test/resources/genesets/unit-test-geneset-hierarchy_genesets.gmt deleted file mode 100644 index c2527bded5a..00000000000 --- a/core/src/test/resources/genesets/unit-test-geneset-hierarchy_genesets.gmt +++ /dev/null @@ -1,7 +0,0 @@ -UNITTEST_GENESET1 http://www.broadinstitute.org/gsea/msigdb/cards/GLI1_UP.V1_DN 207 208 -UNITTEST_GENESET2 http://www.broadinstitute.org/gsea/msigdb/cards/GLI1_UP.V1_UP 672 673 675 -UNITTEST_GENESET3 http://www.broadinstitute.org/gsea/msigdb/cards/E2F1_UP.V1_DN 207 472 -UNITTEST_GENESET4 http://www.broadinstitute.org/gsea/msigdb/cards/E2F1_UP.V1_UP 675 673 -UNITTEST_GENESET5 http://www.broadinstitute.org/gsea/msigdb/cards/EGFR_UP.V1_DN 207 472 208 3265 -UNITTEST_GENESET8 http://www.broadinstitute.org/gsea/msigdb/cards/ERB2_UP.V1_UP 10000 -UNITTEST_GENESET10 http://www.broadinstitute.org/gsea/msigdb/cards/GCNP_SHH_UP_EARLY.V1_UP 4893 207 208 diff --git a/core/src/test/resources/genesets/unit-test-geneset-hierarchy_tree.yaml b/core/src/test/resources/genesets/unit-test-geneset-hierarchy_tree.yaml deleted file mode 100644 index 1da934485fc..00000000000 --- a/core/src/test/resources/genesets/unit-test-geneset-hierarchy_tree.yaml +++ /dev/null @@ -1,15 +0,0 @@ -Custom Gene sets: - Gene sets: - - UNITTEST_GENESET1 -Different Gene sets from Random Institute: - Gene sets: - - UNITTEST_GENESET2 - - UNITTEST_GENESET3 - Institutes Subcategory 1: - Gene sets: - - UNITTEST_GENESET4 - Institutes Subcategory 2: - Gene sets: - - UNITTEST_GENESET1 - - UNITTEST_GENESET8 - - UNITTEST_GENESET10 diff --git a/core/src/test/resources/genesets/unit-test1_genesets.gmt b/core/src/test/resources/genesets/unit-test1_genesets.gmt deleted file mode 100644 index 67b54002a58..00000000000 --- a/core/src/test/resources/genesets/unit-test1_genesets.gmt +++ /dev/null @@ -1,10 +0,0 @@ -UNITTEST_GENESET1 http://www.broadinstitute.org/gsea/msigdb/cards/GLI1_UP.V1_DN 207 208 -UNITTEST_GENESET2 http://www.broadinstitute.org/gsea/msigdb/cards/GLI1_UP.V1_UP 672 673 675 -UNITTEST_GENESET3 http://www.broadinstitute.org/gsea/msigdb/cards/E2F1_UP.V1_DN 207 472 -UNITTEST_GENESET4 http://www.broadinstitute.org/gsea/msigdb/cards/E2F1_UP.V1_UP 675 673 -UNITTEST_GENESET5 http://www.broadinstitute.org/gsea/msigdb/cards/EGFR_UP.V1_DN 207 472 208 3265 -UNITTEST_GENESET6 http://www.broadinstitute.org/gsea/msigdb/cards/EGFR_UP.V1_UP 1 207 208 -UNITTEST_GENESET7 http://www.broadinstitute.org/gsea/msigdb/cards/ERB2_UP.V1_DN 1 2 3 -UNITTEST_GENESET8 http://www.broadinstitute.org/gsea/msigdb/cards/ERB2_UP.V1_UP 10000 -UNITTEST_GENESET9 http://www.broadinstitute.org/gsea/msigdb/cards/GCNP_SHH_UP_EARLY.V1_DN 20000 675 -UNITTEST_GENESET10 http://www.broadinstitute.org/gsea/msigdb/cards/GCNP_SHH_UP_EARLY.V1_UP 4893 207 208 diff --git a/core/src/test/resources/genesets/unit-test1_supp-genesets.txt b/core/src/test/resources/genesets/unit-test1_supp-genesets.txt deleted file mode 100644 index 0f69a630a94..00000000000 --- a/core/src/test/resources/genesets/unit-test1_supp-genesets.txt +++ /dev/null @@ -1,10 +0,0 @@ -UNITTEST_GENESET1 UNITTEST_GENESET1 Genes down-regulated in RK3E cells (kidney epithelium) over-expressing GLI1 [GeneID=2735]. -UNITTEST_GENESET2 UNITTEST_GENESET2 Genes up-regulated in RK3E cells (kidney epithelium) over-expressing GLI1 [GeneID=2735]. -UNITTEST_GENESET3 UNITTEST_GENESET3 Genes down-regulated in mouse fibroblasts over-expressing E2F1 [GeneID=1869] gene. -UNITTEST_GENESET4 UNITTEST_GENESET4 Genes up-regulated in mouse fibroblasts over-expressing E2F1 [GeneID=1869] gene. -UNITTEST_GENESET5 UNITTEST_GENESET5 Genes down-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable EGFR [GeneID=1956]. -UNITTEST_GENESET6 UNITTEST_GENESET6 Genes up-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable EGFR [GeneID=1956]. -UNITTEST_GENESET7 UNITTEST_GENESET7 Genes down-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable ERBB2 [GeneID=2064]. -UNITTEST_GENESET8 UNITTEST_GENESET8 Genes up-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable ERBB2 [GeneID=2064]. -UNITTEST_GENESET9 UNITTEST_GENESET9 Genes down-regulated in granule cell neuron precursors (GCNPs) after stimulation with Shh for 3h. -UNITTEST_GENESET10 UNITTEST_GENESET10 Genes up-regulated in granule cell neuron precursors (GCNPs) after stimulation with Shh for 3h. diff --git a/core/src/test/resources/genesets/unit-test2_genesets.gmt b/core/src/test/resources/genesets/unit-test2_genesets.gmt deleted file mode 100644 index 64ba7b7d0b4..00000000000 --- a/core/src/test/resources/genesets/unit-test2_genesets.gmt +++ /dev/null @@ -1,10 +0,0 @@ -UNITTEST_GENESET1 http://www.thehyve.nl/ 206 208 -UNITTEST_GENESET2 http://www.broadinstitute.org/gsea/msigdb/cards/GLI1_UP.V1_UP 672 673 675 -UNITTEST_GENESET3 http://www.broadinstitute.org/gsea/msigdb/cards/E2F1_UP.V1_DN 207 472 -UNITTEST_GENESET4 http://www.broadinstitute.org/gsea/msigdb/cards/E2F1_UP.V1_UP 675 673 -UNITTEST_GENESET5 http://www.broadinstitute.org/gsea/msigdb/cards/EGFR_UP.V1_DN 207 472 208 3265 -UNITTEST_GENESET6 http://www.broadinstitute.org/gsea/msigdb/cards/EGFR_UP.V1_UP 1 207 208 -UNITTEST_GENESET7 http://www.broadinstitute.org/gsea/msigdb/cards/ERB2_UP.V1_DN 1 2 3 -UNITTEST_GENESET8 http://www.broadinstitute.org/gsea/msigdb/cards/ERB2_UP.V1_UP 10000 -UNITTEST_GENESET9 http://www.broadinstitute.org/gsea/msigdb/cards/GCNP_SHH_UP_EARLY.V1_DN 20000 675 -UNITTEST_GENESET10 http://www.broadinstitute.org/gsea/msigdb/cards/GCNP_SHH_UP_EARLY.V1_UP 4893 207 208 diff --git a/core/src/test/resources/genesets/unit-test2_supp-genesets.txt b/core/src/test/resources/genesets/unit-test2_supp-genesets.txt deleted file mode 100644 index 587f0238315..00000000000 --- a/core/src/test/resources/genesets/unit-test2_supp-genesets.txt +++ /dev/null @@ -1,10 +0,0 @@ -UNITTEST_GENESET1 Thought of new nice name for this geneset Genes down-regulated in RK3E cells (kidney epithelium) over-expressing GLI1 [GeneID=2735]. -UNITTEST_GENESET2 UNITTEST_GENESET2 A made up description is suited for this a fake gene. -UNITTEST_GENESET3 UNITTEST_GENESET3 Genes down-regulated in mouse fibroblasts over-expressing E2F1 [GeneID=1869] gene. -UNITTEST_GENESET4 UNITTEST_GENESET4 Genes up-regulated in mouse fibroblasts over-expressing E2F1 [GeneID=1869] gene. -UNITTEST_GENESET5 UNITTEST_GENESET5 Genes down-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable EGFR [GeneID=1956]. -UNITTEST_GENESET6 UNITTEST_GENESET6 Genes up-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable EGFR [GeneID=1956]. -UNITTEST_GENESET7 UNITTEST_GENESET7 Genes down-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable ERBB2 [GeneID=2064]. -UNITTEST_GENESET8 UNITTEST_GENESET8 Genes up-regulated in MCF-7 cells (breast cancer) positive for ESR1 [GeneID=2099] and engineered to express ligand-activatable ERBB2 [GeneID=2064]. -UNITTEST_GENESET9 UNITTEST_GENESET9 Genes down-regulated in granule cell neuron precursors (GCNPs) after stimulation with Shh for 3h. -UNITTEST_GENESET10 UNITTEST_GENESET10 Genes up-regulated in granule cell neuron precursors (GCNPs) after stimulation with Shh for 3h. diff --git a/core/src/test/resources/genetic_profile_test.txt b/core/src/test/resources/genetic_profile_test.txt deleted file mode 100644 index 8f0d4e767b1..00000000000 --- a/core/src/test/resources/genetic_profile_test.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: study_tcga_pub -stable_id: gbm_rae -profile_name: Barry's CNA Data -profile_description: Blah Blah. -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -target_line: Barry \ No newline at end of file diff --git a/core/src/test/resources/germlineOnlyMutationsData/data_mutations_extended.txt b/core/src/test/resources/germlineOnlyMutationsData/data_mutations_extended.txt deleted file mode 100644 index 029e5dfe8a7..00000000000 --- a/core/src/test/resources/germlineOnlyMutationsData/data_mutations_extended.txt +++ /dev/null @@ -1,5 +0,0 @@ -#sequenced_samples: TCGA-AA-3664-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB -CLEC7A 64581 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Germline Illumina GAIIx chr12 10162443 10162443 Missense_Mutation T209A neutral mutationassessor.org/?cm=msa&ty=f&p=CLC7A_HUMAN&rb=137&re=243&var=T209A mutationassessor.org/pdb.php?prot=CLC7A_HUMAN&from=137&to=243&var=T209A -TAS2R10 50839 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 10869904 10869904 Missense_Mutation G78S medium mutationassessor.org/?cm=msa&ty=f&p=T2R10_HUMAN&rb=1&re=296&var=G78S -GPR19 2842 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 12706312 12706312 Nonsense_Mutation L113P high mutationassessor.org/?cm=msa&ty=f&p=GPR19_HUMAN&rb=82&re=330&var=L113P mutationassessor.org/pdb.php?prot=GPR19_HUMAN&from=82&to=330&var=L113P diff --git a/core/src/test/resources/germlineOnlyMutationsData/meta_mutations_extended.txt b/core/src/test/resources/germlineOnlyMutationsData/meta_mutations_extended.txt deleted file mode 100644 index 5aa1eed1048..00000000000 --- a/core/src/test/resources/germlineOnlyMutationsData/meta_mutations_extended.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: study_tcga_pub -cancer_type_id: breast -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: breast_mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations diff --git a/core/src/test/resources/integrationTestScript.xml b/core/src/test/resources/integrationTestScript.xml deleted file mode 100644 index 395272de8cc..00000000000 --- a/core/src/test/resources/integrationTestScript.xml +++ /dev/null @@ -1,254 +0,0 @@ - - - - - - - - - - - - - - org.mskcc.cbio.portal.scripts.ImportTypesOfCancers - src/test/scripts/test_data/study_es_0/data_cancer_type.txt - false - --noprogress - - - - org.mskcc.cbio.portal.scripts.ImportGenesetData - --data - src/test/resources/genesets/study_es_0_genesets.gmt - --new-version - msigdb_7.5.1 - - - - - org.mskcc.cbio.portal.scripts.RemoveCancerStudy - study_es_0 - - - - - org.mskcc.cbio.portal.scripts.ImportCancerStudy - src/test/scripts/test_data/study_es_0/meta_study.txt - - - - - org.mskcc.cbio.portal.scripts.ImportClinicalData - --data - src/test/scripts/test_data/study_es_0/data_clinical_samples.txt - --meta - src/test/scripts/test_data/study_es_0/meta_clinical_samples.txt - - - - - org.mskcc.cbio.portal.scripts.ImportClinicalData - --data - src/test/scripts/test_data/study_es_0/data_clinical_patients.txt - --meta - src/test/scripts/test_data/study_es_0/meta_clinical_patients.txt - - - - - - - org.mskcc.cbio.portal.scripts.ImportCopyNumberSegmentData - --data - src/test/scripts/test_data/study_es_0/data_cna_hg19.seg - --meta - src/test/scripts/test_data/study_es_0/meta_cna_hg19_seg.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_mutations_extended.maf - --meta - src/test/scripts/test_data/study_es_0/meta_mutations_extended.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_cna_discrete.txt - --meta - src/test/scripts/test_data/study_es_0/meta_cna_discrete.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_expression_median.txt - --meta - src/test/scripts/test_data/study_es_0/meta_expression_median.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_structural_variants.txt - --meta - src/test/scripts/test_data/study_es_0/meta_structural_variants.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportGisticData - --data - src/test/scripts/test_data/study_es_0/data_gistic_genes_amp.txt - --study - study_es_0 - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_cna_log2.txt - --meta - src/test/scripts/test_data/study_es_0/meta_cna_log2.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_methylation_hm27.txt - --meta - src/test/scripts/test_data/study_es_0/meta_methylation_hm27.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_gsva_scores.txt - --meta - src/test/scripts/test_data/study_es_0/meta_gsva_scores.txt - --loadMode - bulkload - --noprogress - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_gsva_pvalues.txt - --meta - src/test/scripts/test_data/study_es_0/meta_gsva_pvalues.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_treatment_ic50.txt - --meta - src/test/scripts/test_data/study_es_0/meta_treatment_ic50.txt - --loadMode - bulkload - --noprogress - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_treatment_ec50.txt - --meta - src/test/scripts/test_data/study_es_0/meta_treatment_ec50.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportProfileData - --data - src/test/scripts/test_data/study_es_0/data_mutational_signature.txt - --meta - src/test/scripts/test_data/study_es_0/meta_mutational_signature.txt - --loadMode - bulkload - --noprogress - - - - - org.mskcc.cbio.portal.scripts.ImportSampleList - src/test/scripts/test_data/study_es_0/case_lists/cases_custom.txt - - - - - org.mskcc.cbio.portal.scripts.AddCaseList - study_es_0 - all - - - - - - - org.mskcc.cbio.portal.scripts.UpdateCancerStudy - study_es_0 - AVAILABLE - - - - - - - - - diff --git a/core/src/test/resources/meta_CNA.txt b/core/src/test/resources/meta_CNA.txt deleted file mode 100644 index b1ac445495f..00000000000 --- a/core/src/test/resources/meta_CNA.txt +++ /dev/null @@ -1,9 +0,0 @@ -cancer_study_identifier: study_tcga_pub -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -data_filename: data_CNA_sample.txt -stable_id: cna -show_profile_in_analysis_tab: true -profile_description: Putative copy-number calls on 1080 cases determined using GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC -pd_annotations_filename: data_cna_pd_annotations.txt diff --git a/core/src/test/resources/meta_mutations_extended.txt b/core/src/test/resources/meta_mutations_extended.txt deleted file mode 100644 index 5aa1eed1048..00000000000 --- a/core/src/test/resources/meta_mutations_extended.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: study_tcga_pub -cancer_type_id: breast -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: breast_mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations diff --git a/core/src/test/resources/meta_mutations_extended_wrong_stable_id.txt b/core/src/test/resources/meta_mutations_extended_wrong_stable_id.txt deleted file mode 100644 index 52147940279..00000000000 --- a/core/src/test/resources/meta_mutations_extended_wrong_stable_id.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: study_tcga_pub -cancer_type_id: breast -genetic_alteration_type: MUTATION_EXTENDED -stable_id: study_tcga_pub_breast_mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations diff --git a/core/src/test/resources/meta_mutsig.txt b/core/src/test/resources/meta_mutsig.txt deleted file mode 100644 index e5624e373c1..00000000000 --- a/core/src/test/resources/meta_mutsig.txt +++ /dev/null @@ -1,2 +0,0 @@ -cancer_study_identifier: coadread_tcga -stable_id: coadread_tcga_mutsig diff --git a/core/src/test/resources/meta_structural_variants.txt b/core/src/test/resources/meta_structural_variants.txt deleted file mode 100644 index 5618ed54fbb..00000000000 --- a/core/src/test/resources/meta_structural_variants.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: study_tcga_pub -genetic_alteration_type: STRUCTURAL_VARIANT -datatype: SV -data_filename: data_structural_variants.txt -stable_id: sv -show_profile_in_analysis_tab: true -profile_description: Test structural variant data -profile_name: Test structural variant data diff --git a/core/src/test/resources/mrna_test.txt b/core/src/test/resources/mrna_test.txt deleted file mode 100644 index 285f6e21125..00000000000 --- a/core/src/test/resources/mrna_test.txt +++ /dev/null @@ -1,10 +0,0 @@ -Entrez_Gene_Id DD638 DD639 DD6518 DD668 DD670 MRC643 MRC676 DD0728 DD598 DD603 DD610 DD611 DD612 DD613 DD614 DD615 DD616 DD620 DD6213 DD672 DD7533 DD8107 MRC2799 MRC618 MRC3736 MRC5397 MRC624 MRC626 MRC644 ML999U PL1133 PL1294 PL3275_4 PL3677 PL4580 PL617 PL619 PL625 PL627 PL634 PL640 PL9313 DD103 DD112 DD172 DD179 DD184 DD595 DD604 DD606 DD69 DD8379 DD98 MRC288 PL289 PL295 PL299 MRC304 DD344 DD363 DD370 DD391 ML397C PL437 DD442 PL448 DD454 DD456 DD471 DD474 DD488 DD506 DD513 MRC239 MRC275 MRC600 MRC135 MRC139 MRC148 MRC259 PL123U PL126 PL128 PL131 PL247 PL269 DD171 DD216 DD226 -999999780 0 0 0 0 1 0 0 -1 0 0 -1 0 0 0 0 0 -1 0 -1 -1 -1 -1 0 -1 0 0 0 -1 -1 0 -1 0 -1 0 0 -1 -1 -1 0 -1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 -1 -1 0 0 -1 0 0 -1 0 -1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 -1 -999995982 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 -1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 -999993310 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 -999997849 0.55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -999992978 0 2.01 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -999992978 0 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 1 1 -999997067 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 -1 -1 0 0 0 0 -1 0 0 0 0 -1 0 1 0 0 0 1 0 1 -1 0 0 0 0 0 0 0 -999911099 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 -999996352 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 diff --git a/core/src/test/resources/mutation_sample.txt b/core/src/test/resources/mutation_sample.txt deleted file mode 100644 index 50a1c2b6afb..00000000000 --- a/core/src/test/resources/mutation_sample.txt +++ /dev/null @@ -1,3 +0,0 @@ -GENE_ID COMMON TCGA-02-0055 TCGA-02-0089 TCGA-02-0027 TCGA-02-0046 TCGA-02-0001 TCGA-06-0171 TCGA-06-0138 TCGA-02-0116 TCGA-06-0147 TCGA-06-0126 TCGA-02-0080 TCGA-02-0057 TCGA-02-0058 TCGA-06-0169 TCGA-06-0187 TCGA-06-0139 TCGA-06-0122 TCGA-06-0132 TCGA-02-0037 TCGA-06-0210 TCGA-02-0028 TCGA-02-0071 TCGA-02-0047 TCGA-02-0083 TCGA-02-0033 TCGA-06-0189 TCGA-02-0038 TCGA-06-0141 TCGA-06-0209 TCGA-06-0154 TCGA-06-0125 TCGA-02-0054 TCGA-02-0052 TCGA-06-0201 TCGA-06-0219 TCGA-06-0124 TCGA-02-0034 TCGA-02-0075 TCGA-06-0174 TCGA-02-0007 TCGA-02-0021 TCGA-02-0006 TCGA-02-0114 TCGA-06-0137 TCGA-06-0188 TCGA-06-0213 TCGA-02-0011 TCGA-02-0086 TCGA-02-0102 TCGA-06-0173 TCGA-02-0014 TCGA-02-0074 TCGA-06-0221 TCGA-06-0156 TCGA-02-0069 TCGA-02-0009 TCGA-06-0178 TCGA-02-0010 TCGA-06-0130 TCGA-06-0176 TCGA-06-0143 TCGA-06-0129 TCGA-06-0211 TCGA-02-0113 TCGA-02-0060 TCGA-06-0237 TCGA-06-0241 TCGA-06-0197 TCGA-06-0133 TCGA-06-0145 TCGA-06-0168 TCGA-02-0064 TCGA-06-0158 TCGA-02-0024 TCGA-06-0195 TCGA-06-0208 TCGA-02-0115 TCGA-06-0185 TCGA-02-0099 TCGA-06-0157 TCGA-06-0166 TCGA-06-0214 TCGA-02-0107 TCGA-06-0148 TCGA-06-0190 TCGA-02-0085 TCGA-06-0184 TCGA-06-0128 TCGA-06-0206 TCGA-02-0043 TCGA-02-0003 -672 BRCA1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -675 BRCA2 0 0 0 0 0 0 0 0 0 0 0 0 0 P920S 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 I1017S 0 0 0 0 0 0 R18H 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \ No newline at end of file diff --git a/core/src/test/resources/mutation_test.txt b/core/src/test/resources/mutation_test.txt deleted file mode 100644 index 708c3a0d12f..00000000000 --- a/core/src/test/resources/mutation_test.txt +++ /dev/null @@ -1,13 +0,0 @@ -Entrez_Gene_Id Tumor_Sample PROT_STRING PROT_STRING_SHORT CALLED_CLASSIFICATION -4763 TCGA-02-0001 e16-28_S575 e16-28_S575 Splice_Site_Del -5728 TCGA-02-0001 R159delGPETKRE* R159fs Frame_Shift_Del -7157 TCGA-02-0001 P278R P278R Missense -472 TCGA-02-0010 G138R G138R Missense -472 TCGA-02-0010 V245A V245A Missense -472 TCGA-02-0010 V245A V245A Missense -10000 TCGA-02-0010 G138R G138R Missense -10000 TCGA-02-0010 V245A V245A Missense -10000 TCGA-02-0010 V245A V245A Missense -10000 TCGA-02-0007 G138R G138R Missense -10000 TCGA-02-0007 V245A V245A Missense -10000 TCGA-02-0007 V245A V245A Missense \ No newline at end of file diff --git a/core/src/test/resources/mutations.txt b/core/src/test/resources/mutations.txt deleted file mode 100644 index f6dee03a4b3..00000000000 --- a/core/src/test/resources/mutations.txt +++ /dev/null @@ -1,454 +0,0 @@ -Entrez_Gene_Id Tumor_Sample PROT_STRING PROT_STRING_SHORT CALLED_CLASSIFICATION -4763 TCGA-02-0001 e16-28_S575 e16-28_S575 Splice_Site_Del -5728 TCGA-02-0001 R159delGPETKRE* R159fs Frame_Shift_Del -7157 TCGA-02-0001 P278R P278R Missense -1956 TCGA-02-0003 C620Y C620Y Missense -2045 TCGA-02-0003 R69Q R69Q Missense -5295 TCGA-02-0003 G376R G376R Missense -7157 TCGA-02-0003 H178Q H178Q Missense -7157 TCGA-02-0003 R282W R282W Missense -1956 TCGA-02-0007 T263P T263P Missense -5728 TCGA-02-0007 L193P L193P Missense -5925 TCGA-02-0007 R787* R787* Nonsense -9173 TCGA-02-0007 I404T I404T Missense -2313 TCGA-02-0009 V436I V436I Missense -27201 TCGA-02-0009 A115T A115T Missense -472 TCGA-02-0010 G138R G138R Missense -472 TCGA-02-0010 V245A V245A Missense -545 TCGA-02-0010 R2533* R2533* Nonsense -577 TCGA-02-0010 A633V A633V Missense -667 TCGA-02-0010 E1716G E1716G Missense -675 TCGA-02-0010 R18H R18H Missense -1029 TCGA-02-0010 A102V A102V Missense -1316 TCGA-02-0010 E12G E12G Missense -1454 TCGA-02-0010 G415R G415R Missense -1793 TCGA-02-0010 S1250L S1250L Missense -1956 TCGA-02-0010 R680G R680G Missense -2335 TCGA-02-0010 A1990T A1990T Missense -2625 TCGA-02-0010 A146T A146T Missense -2778 TCGA-02-0010 A173T A173T Missense -2956 TCGA-02-0010 R1024W R1024W Missense -3320 TCGA-02-0010 D854G D854G Missense -3371 TCGA-02-0010 R499H R499H Missense -3611 TCGA-02-0010 D138G D138G Missense -3667 TCGA-02-0010 R1140H R1140H Missense -3690 TCGA-02-0010 A776V A776V Missense -4057 TCGA-02-0010 R190C R190C Missense -4179 TCGA-02-0010 I350V I350V Missense -4233 TCGA-02-0010 e13+2 e13+2 Splice_Site -4763 TCGA-02-0010 A2315T A2315T Missense -4829 TCGA-02-0010 A86V A86V Missense -4920 TCGA-02-0010 A271T A271T Missense -4982 TCGA-02-0010 R111C R111C Missense -5045 TCGA-02-0010 A574T A574T Missense -5045 TCGA-02-0010 G755D G755D Missense -5629 TCGA-02-0010 R251H R251H Missense -6664 TCGA-02-0010 D428G D428G Missense -6678 TCGA-02-0010 A127V A127V Missense -7015 TCGA-02-0010 R672H R672H Missense -7157 TCGA-02-0010 R175H R175H Missense -7157 TCGA-02-0010 R273C R273C Missense -7249 TCGA-02-0010 A1141T A1141T Missense -7249 TCGA-02-0010 V841I V841I Missense -8038 TCGA-02-0010 D51G D51G Missense -8295 TCGA-02-0010 D3788G D3788G Missense -9314 TCGA-02-0010 H478Y H478Y Missense -9314 TCGA-02-0010 V184M V184M Missense -9757 TCGA-02-0010 R2334C R2334C Missense -51050 TCGA-02-0010 C245S C245S Missense -51592 TCGA-02-0010 K1057* K1057* Nonsense -55294 TCGA-02-0010 R367* R367* Nonsense -152110 TCGA-02-0010 I95V I95V Missense -259266 TCGA-02-0010 S883P S883P Missense -259266 TCGA-02-0010 V1610A V1610A Missense -5292 TCGA-02-0011 N269S N269S Missense -7157 TCGA-02-0011 R175G R175G Missense -667 TCGA-02-0014 G2183D G2183D Missense -675 TCGA-02-0014 I1017S I1017S Missense -3689 TCGA-02-0014 T708I T708I Missense -3939 TCGA-02-0014 V209A V209A Missense -4292 TCGA-02-0014 H543R H543R Missense -5598 TCGA-02-0014 A590T A590T Missense -5601 TCGA-02-0014 G35R G35R Missense -5728 TCGA-02-0014 P96L P96L Missense -6514 TCGA-02-0014 A313T A313T Missense -7048 TCGA-02-0014 I120L I120L Missense -7157 TCGA-02-0014 N200delIACGVFG* N200fs Frame_Shift_Del -10188 TCGA-02-0014 A50T A50T Missense -27148 TCGA-02-0014 W184* W184* Nonsense -116986 TCGA-02-0014 V921I V921I Missense -1956 TCGA-02-0021 R252C R252C Missense -5295 TCGA-02-0021 E439del E439del In_Frame_Del -5728 TCGA-02-0021 T167I T167I Missense -6252 TCGA-02-0021 A423V A423V Missense -7982 TCGA-02-0021 e3-2 e3-2 Splice_Site -2 TCGA-02-0024 G367R G367R Missense -7157 TCGA-02-0024 R342* R342* Nonsense -5728 TCGA-02-0027 R130delQLV* R130fs Frame_Shift_Del -2 TCGA-02-0028 F1290L F1290L Missense -301 TCGA-02-0028 G333E G333E Missense -1292 TCGA-02-0028 P257L P257L Missense -1499 TCGA-02-0028 e1+1 e1+1 Splice_Site -1755 TCGA-02-0028 A1027V A1027V Missense -2033 TCGA-02-0028 A2143T A2143T Missense -2625 TCGA-02-0028 S403F S403F Missense -3959 TCGA-02-0028 A522T A522T Missense -4089 TCGA-02-0028 W509* W509* Nonsense -4223 TCGA-02-0028 S136F S136F Missense -4330 TCGA-02-0028 A1292T A1292T Missense -4613 TCGA-02-0028 P44L P44L Missense -4763 TCGA-02-0028 e42-1 e42-1 Splice_Site -4763 TCGA-02-0028 R997K R997K Missense -4763 TCGA-02-0028 W2296* W2296* Nonsense -5045 TCGA-02-0028 P654S P654S Missense -5295 TCGA-02-0028 KS459delN KS459delN In_Frame_Del -5395 TCGA-02-0028 Q186* Q186* Nonsense -5601 TCGA-02-0028 V91M V91M Missense -5781 TCGA-02-0028 E69K E69K Missense -9064 TCGA-02-0028 E1186K E1186K Missense -11202 TCGA-02-0028 P86L P86L Missense -53335 TCGA-02-0028 A189T A189T Missense -55294 TCGA-02-0028 V672M V672M Missense -57188 TCGA-02-0028 W81* W81* Nonsense -2263 TCGA-02-0033 Q212K Q212K Missense -3667 TCGA-02-0033 S428L S428L Missense -4763 TCGA-02-0033 e32-1 e32-1 Splice_Site -5925 TCGA-02-0033 Q702* Q702* Nonsense -7157 TCGA-02-0033 R248Q R248Q Missense -7157 TCGA-02-0034 C135Y C135Y Missense -7157 TCGA-02-0034 E258Q E258Q Missense -5290 TCGA-02-0037 C420R C420R Missense -7157 TCGA-02-0037 R175H R175H Missense -10257 TCGA-02-0037 G770R G770R Missense -5728 TCGA-02-0038 R173C R173C Missense -21 TCGA-02-0043 A521V A521V Missense -182 TCGA-02-0043 P279L P279L Missense -667 TCGA-02-0043 P4545S P4545S Missense -831 TCGA-02-0043 A401V A401V Missense -1111 TCGA-02-0043 e11+1 e11+1 Splice_Site -1277 TCGA-02-0043 e9+1 e9+1 Splice_Site_Del -1277 TCGA-02-0043 L1235F L1235F Missense -1281 TCGA-02-0043 G861S G861S Missense -1512 TCGA-02-0043 e8+1 e8+1 Splice_Site -1594 TCGA-02-0043 G290E G290E Missense -2956 TCGA-02-0043 T1219I T1219I Missense -4916 TCGA-02-0043 N95S N95S Missense -5164 TCGA-02-0043 P182S P182S Missense -5287 TCGA-02-0043 E1144K E1144K Missense -5451 TCGA-02-0043 R285Q R285Q Missense -7015 TCGA-02-0043 E440K E440K Missense -10188 TCGA-02-0043 R147* R147* Nonsense -10446 TCGA-02-0043 E415K c.1243 Missense -23522 TCGA-02-0043 G1530E G1530E Missense -85366 TCGA-02-0043 S72N S72N Missense -116986 TCGA-02-0043 S907N S907N Missense -1956 TCGA-02-0046 G598V G598V Missense -5290 TCGA-02-0046 P18del P18del In_Frame_Del -7157 TCGA-02-0046 P177S P177S Missense -7157 TCGA-02-0046 R282W R282W Missense -5290 TCGA-02-0047 N345K N345K Missense -7249 TCGA-02-0047 L45M L45M Missense -5728 TCGA-02-0052 T78delRQI* T78fs Frame_Shift_Del -5925 TCGA-02-0052 e18+2 e18+2 Splice_Site -1608 TCGA-02-0054 K347insNSVTGATKVSSATRVSPRGTACGAG* K347fs Frame_Shift_Ins -1956 TCGA-02-0054 A289V A289V Missense -7157 TCGA-02-0054 R213* R213* Nonsense -581 TCGA-02-0055 G10D G10D Missense -1063 TCGA-02-0055 K19R K19R Missense -5324 TCGA-02-0055 M361I M361I Missense -5728 TCGA-02-0055 T131A T131A Missense -5925 TCGA-02-0055 L267delRT* L267fs Frame_Shift_Del -7157 TCGA-02-0055 V216M V216M Missense -9757 TCGA-02-0057 T498N T498N Missense -7157 TCGA-02-0058 V272M V272M Missense -23321 TCGA-02-0058 P343S P343S Missense -2260 TCGA-02-0060 K656E K656E Missense -2064 TCGA-02-0069 T216S T216S Missense -2064 TCGA-02-0069 V777A V777A Missense -3845 TCGA-02-0069 G12A G12A Missense -5528 TCGA-02-0069 G267S G267S Missense -5728 TCGA-02-0071 L320* L320* Nonsense -5295 TCGA-02-0074 N564K N564K Missense -7157 TCGA-02-0074 N235D N235D Missense -4436 TCGA-02-0075 P69T P69T Missense -4763 TCGA-02-0075 G849* G849* Nonsense -5728 TCGA-02-0075 F241L F241L Missense -7157 TCGA-02-0075 L130F L130F Missense -8826 TCGA-02-0075 Q904R Q904R Missense -51347 TCGA-02-0075 R490C R490C Missense -1594 TCGA-02-0080 P247S P247S Missense -2064 TCGA-02-0080 L49H L49H Missense -7157 TCGA-02-0080 R273C R273C Missense -25865 TCGA-02-0080 D411N D411N Missense -51050 TCGA-02-0080 A179T A179T Missense -310 TCGA-02-0083 G104E G104E Missense -405 TCGA-02-0083 P607S P607S Missense -529 TCGA-02-0083 G213R G213R Missense -558 TCGA-02-0083 P304S P304S Missense -577 TCGA-02-0083 P1455S P1455S Missense -613 TCGA-02-0083 A138T A138T Missense -667 TCGA-02-0083 G2032E G2032E Missense -842 TCGA-02-0083 G134E G134E Missense -862 TCGA-02-0083 R10K R10K Missense -867 TCGA-02-0083 P428L P428L Missense -867 TCGA-02-0083 W609* W609* Nonsense -1029 TCGA-02-0083 H134delPDPCTTLPGRASWTRWWCCTGPGRGWTCAMPGAVCPWTWL H134fs Frame_Shift_Del -1029 TCGA-02-0083 H134delPDPCTTLPGRASWTRWWCCTGPGRGWTCAMPGAVCPWTWL H134fs Frame_Shift_Del -1103 TCGA-02-0083 G130E G130E Missense -1271 TCGA-02-0083 T303I T303I Missense -1277 TCGA-02-0083 P343S P343S Missense -1277 TCGA-02-0083 P774S P774S Missense -1281 TCGA-02-0083 G879D G879D Missense -1641 TCGA-02-0083 P409L P409L Missense -1993 TCGA-02-0083 G167D G167D Missense -2043 TCGA-02-0083 P332L P332L Missense -2045 TCGA-02-0083 S207F S207F Missense -2065 TCGA-02-0083 S1046N S1046N Missense -2309 TCGA-02-0083 G86R c.772 Missense -2335 TCGA-02-0083 A1993V A1993V Missense -2475 TCGA-02-0083 A492T A492T Missense -2737 TCGA-02-0083 S276N S276N Missense -2778 TCGA-02-0083 A461V A461V Missense -2909 TCGA-02-0083 W452* W452* Nonsense -2956 TCGA-02-0083 V1056M V1056M Missense -3320 TCGA-02-0083 P48S P48S Missense -3371 TCGA-02-0083 G892D G892D Missense -3690 TCGA-02-0083 G484E G484E Missense -3815 TCGA-02-0083 A599T A599T Missense -3895 TCGA-02-0083 E113K E113K Missense -3916 TCGA-02-0083 S47C S47C Missense -3939 TCGA-02-0083 T144I T144I Missense -4067 TCGA-02-0083 A119V A119V Missense -4292 TCGA-02-0083 A410T A410T Missense -4292 TCGA-02-0083 G101S G101S Missense -4303 TCGA-02-0083 S344F S344F Missense -4436 TCGA-02-0083 G692E G692E Missense -4440 TCGA-02-0083 C167Y C167Y Missense -4753 TCGA-02-0083 D602N D602N Missense -4851 TCGA-02-0083 A2452T A2452T Missense -4920 TCGA-02-0083 E519K E519K Missense -5159 TCGA-02-0083 A74T A74T Missense -5371 TCGA-02-0083 P96T P96T Missense -5578 TCGA-02-0083 P613S P613S Missense -5590 TCGA-02-0083 E574K E574K Missense -5603 TCGA-02-0083 V184M V184M Missense -7077 TCGA-02-0083 Q212* Q212* Nonsense -7150 TCGA-02-0083 P560L P560L Missense -7157 TCGA-02-0083 P278S P278S Missense -7374 TCGA-02-0083 A34T A34T Missense -7869 TCGA-02-0083 G701D G701D Missense -8751 TCGA-02-0083 G741D G741D Missense -8826 TCGA-02-0083 S804F S804F Missense -9371 TCGA-02-0083 P46S P46S Missense -10165 TCGA-02-0083 P126S P126S Missense -10257 TCGA-02-0083 A1279T A1279T Missense -10612 TCGA-02-0083 G371S G371S Missense -23161 TCGA-02-0083 P155S P155S Missense -23786 TCGA-02-0083 G439D G439D Missense -26019 TCGA-02-0083 E851K E851K Missense -51147 TCGA-02-0083 G234R G234R Missense -53335 TCGA-02-0083 P305S P305S Missense -57188 TCGA-02-0083 D1482N D1482N Missense -57634 TCGA-02-0083 Q377* Q377* Nonsense -57724 TCGA-02-0083 S2169T S2169T Missense -60561 TCGA-02-0083 P788L P788L Missense -386653 TCGA-02-0083 S145* S145* Nonsense -4193 TCGA-02-0085 Y287H Y287H Missense -4893 TCGA-02-0085 G12D G12D Missense -4763 TCGA-02-0086 E2318delNKTCIL* E2318fs Frame_Shift_Del -4763 TCGA-02-0086 T1983delQICLMLY* T1983fs Frame_Shift_Del -596 TCGA-02-0089 A85T A85T Missense -1956 TCGA-02-0089 A289T A289T Missense -2064 TCGA-02-0089 C311R C311R Missense -2064 TCGA-02-0089 E321G E321G Missense -5295 TCGA-02-0089 D560Y D560Y Missense -6098 TCGA-02-0089 V1666I V1666I Missense -7157 TCGA-02-0089 H179Y H179Y Missense -1063 TCGA-02-0099 e13+1 e13+1 Splice_Site -1576 TCGA-02-0099 D6N D6N Missense -4683 TCGA-02-0099 P748S P748S Missense -4705 TCGA-02-0099 e6+1 e6+1 Splice_Site -5591 TCGA-02-0099 S3457F S3457F Missense -5728 TCGA-02-0099 Y177* Y177* Nonsense -6184 TCGA-02-0099 E99K E99K Missense -7472 TCGA-02-0099 D338N D338N Missense -8295 TCGA-02-0099 V2301I V2301I Missense -9564 TCGA-02-0099 E708K E708K Missense -147339 TCGA-02-0099 G283E G283E Missense -613 TCGA-02-0102 D451N D451N Missense -9990 TCGA-02-0102 A896V A896V Missense -2064 TCGA-02-0107 V750E V750E Missense -4763 TCGA-02-0107 K1640delGLLFFLALLTTTSPQSISITVTPGSGSTPSIMSGC* K1640fs Frame_Shift_Del -4763 TCGA-02-0107 R1391S R1391S Missense -196403 TCGA-02-0107 G304E G304E Missense -2064 TCGA-02-0113 V777A V777A Missense -5728 TCGA-02-0113 E235* E235* Nonsense -667 TCGA-02-0114 E6576K E6576K Missense -1029 TCGA-02-0114 W15* W15* Nonsense -1316 TCGA-02-0114 S77F S77F Missense -1540 TCGA-02-0114 A154V A154V Missense -1969 TCGA-02-0114 G111D G111D Missense -2033 TCGA-02-0114 P1337S P1337S Missense -2313 TCGA-02-0114 G94E G94E Missense -2335 TCGA-02-0114 P300S P300S Missense -2335 TCGA-02-0114 P363S P363S Missense -2956 TCGA-02-0114 E484K E484K Missense -2995 TCGA-02-0114 G98S G98S Missense -3399 TCGA-02-0114 P95S P95S Missense -4057 TCGA-02-0114 e16-1 e16-1 Splice_Site -4233 TCGA-02-0114 W540* W540* Nonsense -4440 TCGA-02-0114 A100T A100T Missense -4846 TCGA-02-0114 G345S G345S Missense -4846 TCGA-02-0114 G439R G439R Missense -4851 TCGA-02-0114 T32I T32I Missense -5159 TCGA-02-0114 L986F L986F Missense -5295 TCGA-02-0114 T576del T576del In_Frame_Del -5591 TCGA-02-0114 P2531S P2531S Missense -6098 TCGA-02-0114 e21+1 e21+1 Splice_Site -6774 TCGA-02-0114 S405delCRIQTLDPEGAEMWEWGPSQL* S405fs Frame_Shift_Del -6935 TCGA-02-0114 E128K c.382 Missense -6938 TCGA-02-0114 e13+1 e13+1 Splice_Site -6938 TCGA-02-0114 S497delCQSQWQSFSPV* S497fs Frame_Shift_Del -7157 TCGA-02-0114 A276V A276V Missense -7157 TCGA-02-0114 C176Y C176Y Missense -7248 TCGA-02-0114 S1043N S1043N Missense -7410 TCGA-02-0114 e22-1 e22-1 Splice_Site -8295 TCGA-02-0114 E2017K c.6049 Missense -8527 TCGA-02-0114 R80Q R80Q Missense -8651 TCGA-02-0114 G82E G82E Missense -9131 TCGA-02-0114 D91N D91N Missense -9212 TCGA-02-0114 V57M V57M Missense -9757 TCGA-02-0114 S1285N S1285N Missense -10677 TCGA-02-0114 W716* W716* Nonsense -10752 TCGA-02-0114 A335V A335V Missense -23235 TCGA-02-0114 G497E G497E Missense -23491 TCGA-02-0114 e5-1 c.561-1 Splice_Site -23522 TCGA-02-0114 E705K E705K Missense -25805 TCGA-02-0114 G221E G221E Missense -29110 TCGA-02-0114 A535T A535T Missense -51147 TCGA-02-0114 W220* W220* Nonsense -54900 TCGA-02-0114 S305C S305C Missense -55526 TCGA-02-0114 A783T A783T Missense -57634 TCGA-02-0114 E2169K E2169K Missense -57634 TCGA-02-0114 M1640I M1640I Missense -171017 TCGA-02-0114 A433T A433T Missense -171017 TCGA-02-0114 S269F S269F Missense -2064 TCGA-02-0115 e2+2 e2+2 Splice_Site -2064 TCGA-02-0115 C334S C334S Missense -2064 TCGA-02-0115 D326G D326G Missense -4763 TCGA-02-0115 W1641* W1641* Nonsense -1956 TCGA-02-0116 A597P A597P Missense -2064 TCGA-02-0116 N319D N319D Missense -3916 TCGA-02-0116 e5+1 e5+1 Splice_Site -5290 TCGA-02-0116 R88Q R88Q Missense -10612 TCGA-06-0122 C736Y C736Y Missense -4763 TCGA-06-0124 Q1966* Q1966* Nonsense -4763 TCGA-06-0124 S2311* S2311* Nonsense -5728 TCGA-06-0124 T277I T277I Missense -6469 TCGA-06-0124 V254M V254M Missense -667 TCGA-06-0125 S4074C S4074C Missense -1103 TCGA-06-0125 R323H R323H Missense -1956 TCGA-06-0125 G598V G598V Missense -5727 TCGA-06-0125 R1394* R1394* Nonsense -5728 TCGA-06-0125 T319del T319fs Frame_Shift_Del -5728 TCGA-06-0125 T319del* T319fs Frame_Shift_Del -1278 TCGA-06-0126 R938H R938H Missense -7133 TCGA-06-0126 T222P T222P Missense -6938 TCGA-06-0128 e17-1 e17-1 Splice_Site -7157 TCGA-06-0128 S313delAPLPSQRRNHWMENISPFRSVGVSASRCSES* S313fs Frame_Shift_Del -4194 TCGA-06-0129 T160S T160S Missense -5295 TCGA-06-0129 R574delKDERPILDVVDSKRCSAKEVERVVGQ* R574fs Frame_Shift_Del -7157 TCGA-06-0130 R158H R158H Missense -2033 TCGA-06-0133 P1880S P1880S Missense -2735 TCGA-06-0133 A1051V A1051V Missense -5295 TCGA-06-0133 W583del W583del In_Frame_Del -9990 TCGA-06-0133 D929Y D929Y Missense -53335 TCGA-06-0133 G514S G514S Missense -5728 TCGA-06-0138 R130* R130* Nonsense -23491 TCGA-06-0139 M96I c.288 Missense -3690 TCGA-06-0141 R378C R378C Missense -3838 TCGA-06-0141 R13H R13H Missense -8872 TCGA-06-0141 E293K E293K Missense -667 TCGA-06-0145 E3261K E3261K Missense -1111 TCGA-06-0145 R160H R160H Missense -5580 TCGA-06-0145 R67C R67C Missense -3643 TCGA-06-0147 A20T A20T Missense -57787 TCGA-06-0147 e13+1 e13+1 Splice_Site -667 TCGA-06-0148 K923N K923N Missense -1956 TCGA-06-0148 A289V A289V Missense -1956 TCGA-06-0154 R222C R222C Missense -54518 TCGA-06-0154 R335W R335W Missense -1956 TCGA-06-0156 A289V A289V Missense -1956 TCGA-06-0156 S703F S703F Missense -4507 TCGA-06-0156 Q122H Q122H Missense -5728 TCGA-06-0156 C105del* C105fs Frame_Shift_Del -7157 TCGA-06-0156 S99delENLPGQLRFPSGLLAFWDSQVCDLHVLPCPQQDVLPTGQDLPCAAVG* S99fs Frame_Shift_Del -1956 TCGA-06-0157 A289V A289V Missense -5728 TCGA-06-0157 Y76del* Y76fs Frame_Shift_Del -6197 TCGA-06-0157 L381H L381H Missense -6855 TCGA-06-0157 V222M V222M Missense -3689 TCGA-06-0158 e6+1 e6+1 Splice_Site -5290 TCGA-06-0166 LWGIHLM10del LWGIHLM10del In_Frame_Del -5728 TCGA-06-0166 T167S T167S Missense -5728 TCGA-06-0168 A328del* A328fs Frame_Shift_Del -675 TCGA-06-0169 P920S P920S Missense -5290 TCGA-06-0171 M1043V M1043V Missense -5781 TCGA-06-0171 I282M I282M Missense -8805 TCGA-06-0171 R391H R391H Missense -2321 TCGA-06-0173 G727C G727C Missense -6664 TCGA-06-0173 E412* E412* Nonsense -5156 TCGA-06-0174 W349C W349C Missense -5728 TCGA-06-0176 R130* R130* Nonsense -5925 TCGA-06-0176 R251* R251* Nonsense -6872 TCGA-06-0176 S1654T S1654T Missense -9564 TCGA-06-0176 A780V A780V Missense -23235 TCGA-06-0176 A635V A635V Missense -23239 TCGA-06-0176 M738T M738T Missense -53335 TCGA-06-0176 R740C R740C Missense -4829 TCGA-06-0178 P148H P148H Missense -5295 TCGA-06-0178 DKRMNS560del DKRMNS560del In_Frame_Del -4763 TCGA-06-0184 Q2281delHHFLIRTRLCTKPSFG* Q2281fs Frame_Shift_Del -5728 TCGA-06-0184 G36E G36E Missense -5925 TCGA-06-0184 e20-1 e20-1 Splice_Site -5925 TCGA-06-0184 Y659F Y659F Missense -7157 TCGA-06-0184 R158H R158H Missense -1956 TCGA-06-0185 V651M V651M Missense -5579 TCGA-06-0185 D631N D631N Missense -6772 TCGA-06-0185 K201M K201M Missense -5728 TCGA-06-0187 G132D G132D Missense -3371 TCGA-06-0188 E1897K E1897K Missense -5728 TCGA-06-0188 N323delMILTKQIKTKPTDTFLQILR* N323fs Frame_Shift_Del -7157 TCGA-06-0188 e8-1 e8-1 Splice_Site -7157 TCGA-06-0188 A307V A307V Missense -10188 TCGA-06-0189 W138* W138* Nonsense -26038 TCGA-06-0189 H1125Y H1125Y Missense -4763 TCGA-06-0190 Q1426K Q1426K Missense -5728 TCGA-06-0190 D92E D92E Missense -7157 TCGA-06-0190 G245S G245S Missense -7465 TCGA-06-0190 G160S G160S Missense -5728 TCGA-06-0195 R159K R159K Missense -5925 TCGA-06-0195 Q395* Q395* Nonsense -7157 TCGA-06-0195 D281A D281A Missense -7157 TCGA-06-0195 G266R G266R Missense -5728 TCGA-06-0197 Y76del* Y76fs Frame_Shift_Del -5728 TCGA-06-0197 Y76del* Y76fs Frame_Shift_Del -7157 TCGA-06-0197 F270S F270S Missense -2324 TCGA-06-0201 E989D E989D Missense -4763 TCGA-06-0201 e37+1 e37+1 Splice_Site -4763 TCGA-06-0201 R1513* R1513* Nonsense -5590 TCGA-06-0206 R260H R260H Missense -5728 TCGA-06-0206 T319del* T319fs Frame_Shift_Del -5925 TCGA-06-0206 e24-1 e24-1 Splice_Site -7157 TCGA-06-0206 R273H R273H Missense -12 TCGA-06-0209 V45M V45M Missense -2770 TCGA-06-0209 D193N D193N Missense -2891 TCGA-06-0213 I293del I293del In_Frame_Del -5728 TCGA-06-0213 R335* R335* Nonsense -5925 TCGA-06-0213 V654L V654L Missense -6872 TCGA-06-0213 G73E G73E Missense -4763 TCGA-06-0214 D1828N D1828N Missense -5079 TCGA-06-0214 Y346C Y346C Missense -7157 TCGA-06-0221 K139delNLPCAAVG* K139fs Frame_Shift_Del -1956 TCGA-06-0237 L62R L62R Missense -7157 TCGA-06-0237 I195T I195T Missense -7157 TCGA-06-0241 R248Q R248Q Missense diff --git a/core/src/test/resources/panCancerStudySummary/cases_all.txt b/core/src/test/resources/panCancerStudySummary/cases_all.txt deleted file mode 100755 index 1961da1041e..00000000000 --- a/core/src/test/resources/panCancerStudySummary/cases_all.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: multi_cancer_study -stable_id: multi_cancer_study_all -case_list_name: All Tumors -case_list_description: All tumor samples (19 samples) -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 diff --git a/core/src/test/resources/panCancerStudySummary/data_CNA.txt b/core/src/test/resources/panCancerStudySummary/data_CNA.txt deleted file mode 100755 index 25fcc20708e..00000000000 --- a/core/src/test/resources/panCancerStudySummary/data_CNA.txt +++ /dev/null @@ -1,13 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 -TESTA1CF 999929974 2 2 2 2 -2 -2 -2 -2 2 -2 2 -2 2 2 2 2 -2 -2 -2 -TESTA2BP1 999954715 2 0 0 0 -2 0 0 0 2 -2 0 0 0 0 0 0 0 0 0 -TESTA2M 999999992 2 0 0 0 -2 0 0 0 2 -2 2 2 0 0 0 0 0 0 0 -TESTA2ML1 999144568 2 0 0 0 -2 0 0 0 0 0 0 0 -2 0 0 0 0 0 0 -TESTAADACL2 999344752 0 2 0 0 0 -2 0 0 0 0 0 0 -2 -2 0 0 0 0 0 -TESTAAK1 999922848 0 2 2 0 0 -2 -2 0 0 0 0 0 0 -2 0 0 0 0 0 -TESTAASDH 999132949 0 2 2 0 0 -2 -2 0 0 0 0 0 0 0 0 0 0 0 0 -TESTAASS 999910157 0 0 2 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 -TESTABCA1 999999919 0 0 2 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 -TESTABCB6 999910058 0 0 2 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 -TESTACOXL 999955289 0 0 0 2 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 -TESTACTL7B 999910880 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 diff --git a/core/src/test/resources/panCancerStudySummary/data_clinical.txt b/core/src/test/resources/panCancerStudySummary/data_clinical.txt deleted file mode 100755 index 7ae5ef35673..00000000000 --- a/core/src/test/resources/panCancerStudySummary/data_clinical.txt +++ /dev/null @@ -1,24 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Cancer Type Cancer Type Detailed -#Patient identifier Sample identifier Subtype description Cancer Type Cancer Type Detailed -#STRING STRING STRING STRING STRING -#1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE CANCER_TYPE CANCER_TYPE_DETAILED -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA cns byst -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A cns byst -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A cns byst -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA cns byst -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA cns bimt -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A cns bimt -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA cns bimt -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A cns bimt -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like cervix cead -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B cervix cead -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA cervix cead -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like cervix cead -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA cervix cene -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA cervix cene -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A cervix cene -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like cervix cene -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like cervix cacc -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B cervix cacc -TCGA-A2-A04T TCGA-A2-A04T-01 NA cervix cacc diff --git a/core/src/test/resources/panCancerStudySummary/data_mutations_extended.txt b/core/src/test/resources/panCancerStudySummary/data_mutations_extended.txt deleted file mode 100755 index 7fb714db324..00000000000 --- a/core/src/test/resources/panCancerStudySummary/data_mutations_extended.txt +++ /dev/null @@ -1,24 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION ONCOTATOR_PROTEIN_CHANGE ONCOTATOR_GENE_SYMBOL ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -TESTA1CF 999929974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-A1-A0SB-01 TCGA-A1-A0SB-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.D424E A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 p.D424E 768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -TESTA1CF 999929974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-A1-A0SD-01 TCGA-A1-A0SD-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.A195V A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -TESTA1CF 999929974 genome.wustl.edu 37 10 52595937 52595937 + Missense_Mutation SNP G G A novel unknown TCGA-A1-A0SE-01 TCGA-A1-A0SE-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.I167I A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Missense_Mutation p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.501 p.I167 615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -TESTA2M 999999992 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-A1-A0SJ-01 TCGA-A1-A0SJ-01 T T Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2M 999999992 genome.wustl.edu 37 12 9242995 9242995 + Missense_Mutation SNP G G A novel unknown TCGA-A1-A0SK-01 TCGA-A1-A0SK-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Missense_Mutation p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.2553 p.N851 3 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2M 999999992 genome.wustl.edu 37 12 9246090 9246090 + Missense_Mutation SNP C C T novel unknown TCGA-A1-A0SM-01 TCGA-A1-A0SM-01 C C Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Missense_Mutation p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2M 999999992 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A1-A0SN-01 TCGA-A1-A0SN-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 3 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2M 999999992 genome.wustl.edu 37 12 9256962 9256962 + Missense_Mutation SNP G G T novel unknown TCGA-A1-A0SO-01 TCGA-A1-A0SO-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.P380Q A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1138-1140)CCA>CAA c.1139C>A 11 380 380 Missense_Mutation p.P380Q A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1138-1140)CCA>CAA c.1139C>A 11 380 380 medium 2.625 P380Q getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=222&re=421&var=P380Q getma.org/pdb.php?prot=A2MG_HUMAN&from=222&to=421&var=P380Q getma.org/?cm=var&var=hg19,12,9256962,G,T&fts=all 12 9256962 9256962 G T SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.1139 p.P380Q 957 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2ML1 999144568 genome.wustl.edu 37 12 8975820 8975820 + Missense_Mutation SNP C C A novel unknown TCGA-A1-A0SP-01 TCGA-A1-A0SP-01 C C Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.S35S A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(103-105)TCC>TCA c.105C>A 2 35 35 Missense_Mutation p.S35S A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(103-105)TCC>TCA c.105C>A 2 35 35 12 8975820 8975820 C A SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.105 p.S35 801 HMMPfam_A2M_N HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2ML1 999144568 genome.wustl.edu 37 12 8994108 8994108 + Missense_Mutation SNP G G C novel unknown TCGA-A1-A0SQ-01 TCGA-A1-A0SQ-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.W408C A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1222-1224)TGG>TGC c.1224G>C 11 408 408 Missense_Mutation p.W408C A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1222-1224)TGG>TGC c.1224G>C 11 408 408 medium 2.005 W408C getma.org/?cm=msa&ty=f&p=A2ML1_HUMAN&rb=239&re=438&var=W408C getma.org/pdb.php?prot=A2ML1_HUMAN&from=239&to=438&var=W408C getma.org/?cm=var&var=hg19,12,8994108,G,C&fts=all 12 8994108 8994108 G C SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1224 p.W408C 995 NULL HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2ML1 999144568 genome.wustl.edu 37 12 8995779 8995779 + Missense_Mutation SNP G G A novel unknown TCGA-A2-A04N-01 TCGA-A2-A04N-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.R433H A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1297-1299)CGT>CAT c.1298G>A 12 433 433 Missense_Mutation p.R433H A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1297-1299)CGT>CAT c.1298G>A 12 433 433 neutral 255 R433H getma.org/?cm=msa&ty=f&p=A2ML1_HUMAN&rb=239&re=438&var=R433H getma.org/pdb.php?prot=A2ML1_HUMAN&from=239&to=438&var=R433H getma.org/?cm=var&var=hg19,12,8995779,G,A&fts=all 12 8995779 8995779 G A SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1298 p.R433H 108 NULL HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2ML1 999144568 genome.wustl.edu 37 12 8995942 8995942 + Missense_Mutation SNP C C T novel unknown TCGA-A2-A04P-01 TCGA-A2-A04P-01 C C Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.I487I A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1459-1461)ATC>ATT c.1461C>T 12 487 487 Missense_Mutation p.I487I A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1459-1461)ATC>ATT c.1461C>T 12 487 487 12 8995942 8995942 C T SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1461 p.I487 40 HMMPfam_A2M_N_2 HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2ML1 999144568 genome.wustl.edu 37 12 8998791 8998791 + Missense_Mutation SNP C C T novel unknown TCGA-A2-A04Q-01 TCGA-A2-A04Q-01 C C Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.F552F A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1654-1656)TTC>TTT c.1656C>T 14 552 552 Missense_Mutation p.F552F A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1654-1656)TTC>TTT c.1656C>T 14 552 552 12 8998791 8998791 C T SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1656 p.F552 669 HMMPfam_A2M_N_2 HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2ML1 999144568 genome.wustl.edu 37 12 9000231 9000231 + Missense_Mutation SNP G G A novel unknown TCGA-A2-A04R-01 TCGA-A2-A04R-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.A590A A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1768-1770)GCG>GCA c.1770G>A 15 590 590 Missense_Mutation p.A590A A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1768-1770)GCG>GCA c.1770G>A 15 590 590 12 9000231 9000231 G A SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1770 p.A590 0 HMMPfam_A2M_N_2 HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTA2ML1 999144568 genome.wustl.edu 37 12 9001389 9001389 + Missense_Mutation SNP C C G novel unknown TCGA-A2-A04T-01 TCGA-A2-A04T-01 C C Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Missense_Mutation p.S636C A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1906-1908)TCT>TGT c.1907C>G 16 636 636 Missense_Mutation p.S636C A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1906-1908)TCT>TGT c.1907C>G 16 636 636 neutral -0.22 S636C getma.org/?cm=msa&ty=f&p=A2ML1_HUMAN&rb=602&re=735&var=S636C getma.org/pdb.php?prot=A2ML1_HUMAN&from=602&to=735&var=S636C getma.org/?cm=var&var=hg19,12,9001389,C,G&fts=all 12 9001389 9001389 C G SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1907 p.S636C 165 NULL HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -TESTAADACL2 999344752 genome.wustl.edu 37 3 151474795 151474795 + Frame_Shift_Del DEL G G - novel unknown TCGA-A1-A0SB-01 TCGA-A1-A0SB-01 G G Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Frame_Shift_Del p.E207fs AADACL2 NM_207365 NP_997248 ADCL2_HUMAN Q6P093 c.(619-621)GAAfs c.619delG 5 207 207 Frame_Shift_Del p.E207fs AADACL2 NM_207365 NP_997248 ADCL2_HUMAN Q6P093 c.(619-621)GAAfs c.619delG 5 207 207 3 151474795 151474795 G - DEL AADACL2 NM_207365 human genbank 57_37b +1 validated frame_shift_del c.619 p.E207fs 192 superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3 superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER (deletion:cds_exon[151474780,151475382]) no_errors -TESTAAK1 999922848 genome.wustl.edu 37 2 69870164 69870166 + In_Frame_Del DEL CTT CTT - novel unknown TCGA-A1-A0SD-01 TCGA-A1-A0SD-01 CTT CTT Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx In_Frame_Del p.K3del AAK1 NM_014911 NP_055726 AAK1_HUMAN Q2M2I8 c.(7-9)AAGdel c.7_9delAAG 2 3 3 In_Frame_Del p.K3del AAK1 NM_014911 NP_055726 AAK1_HUMAN Q2M2I8 c.(7-9)AAGdel c.7_9delAAG 2 3 3 2 69870164 69870166 CTT - DEL AAK1 NM_014911 human genbank 57_37b -1 reviewed in_frame_del c.9_7 p.K3in_frame_del 1.000:1.000:1.000 NULL superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST (deletion:cds_exon[69870010,69870172]) no_errors -TESTAASDH 999132949 genome.wustl.edu 37 4 57216157 57216157 + Frame_Shift_Del DEL C C - novel unknown TCGA-A1-A0SD-01 TCGA-A1-A0SD-01 C C Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Frame_Shift_Del p.G587fs AASDH NM_181806 NP_861522 ACSF4_HUMAN Q4L235 c.(1759-1761)GGAfs c.1760delG 11 587 587 Frame_Shift_Del p.G587fs AASDH NM_181806 NP_861522 ACSF4_HUMAN Q4L235 c.(1759-1761)GGAfs c.1760delG 11 587 587 4 57216157 57216157 C - DEL AASDH NM_181806 human genbank 57_37b -1 validated frame_shift_del c.1760 p.G587fs 1.000 superfamily_ACP-like,HMMPfam_PP-binding superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_ACP-like,HMMPfam_PP-binding,superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ (deletion:cds_exon[57215429,57216224]) no_errors -TESTAASS 999910157 genome.wustl.edu 37 7 121721545 121721553 + Splice_Site DEL GTCACTCAC GTCACTCAC - novel unknown TCGA-A1-A0SQ-01 TCGA-A1-A0SQ-01 GTCACTCAC GTCACTCAC Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Splice_Site p.W760_splice AASS NM_005763 NP_005754 c.e19+1 c.2280_splice 19 Splice_Site p.W760_splice AASS NM_005763 NP_005754 c.e19+1 c.2280_splice 19 7 121721545 121721553 GTCACTCAC - DEL AASS NM_005763 human genbank 57_37b -1 reviewed splice_site_del c.2280+1_2280+1 e19+1 0.107:0.108:0.120:0.896:0.996:1.000:0.997:1.000:1.000 - - (deletion:intron[121719767,121721553]) no_errors -TESTABCA1 999999919 genome.wustl.edu 37 9 107556793 107556794 + Splice_Site INS - - AAA novel unknown TCGA-A2-A04T-01 TCGA-A2-A04T-01 - - Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx rs5899617 Splice_Site p.K1795_splice ABCA1 NM_005502 NP_005493 c.e40-1 c.5383_splice 40 Splice_Site p.K1795_splice ABCA1 NM_005502 NP_005493 c.e40-1 c.5383_splice 40 9 107556793 107556794 - AAA INS ABCA1 NM_005502 human genbank 57_37b -1 reviewed splice_site_ins c.5383-3_5383-2 e39-2 1.000:0.061 - - - no_errors -TESTABCB6 999910058 genome.wustl.edu 37 2 220082498 220082499 + Frame_Shift_Ins INS - - T novel unknown TCGA-A2-A04T-01 TCGA-A2-A04T-01 - - Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Frame_Shift_Ins p.V194fs ABCB6 NM_005689 NP_005680 ABCB6_HUMAN Q9NP58 c.(580-582)GTGfs c.580_581insA 2 194 194 Frame_Shift_Ins p.V194fs ABCB6 NM_005689 NP_005680 ABCB6_HUMAN Q9NP58 c.(580-582)GTGfs c.580_581insA 2 194 194 2 220082498 220082499 - T INS ABCB6 NM_005689 human genbank 57_37b -1 reviewed frame_shift_ins c.581_580 p.V194fs 0.982:0.957 NULL superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1 - no_errors -TESTACOXL 999955289 genome.wustl.edu 37 2 111551702 111551703 + Frame_Shift_Ins INS - - A novel unknown TCGA-A2-A04T-01 TCGA-A2-A04T-01 - - Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Frame_Shift_Ins p.S99fs ACOXL NM_001105516 NP_001098986 ACOXL_HUMAN Q9NUZ1 c.(295-297)AGCfs c.296_297insA 5 99 99 Frame_Shift_Ins p.S99fs ACOXL NM_001142807 NP_001136279 ACOXL_HUMAN Q9NUZ1 c.(295-297)AGCfs c.296_297insA 5 99 99 2 111551702 111551703 - A INS ACOXL NM_001142807 human genbank 57_37b +1 validated frame_shift_ins c.296_297 p.S99fs 1.000:1.000 superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_ACOX - no_errors -TESTACTL7B 999910880 genome.wustl.edu 37 9 111617204 111617205 + Frame_Shift_Ins INS - - C novel unknown TCGA-A2-A04R-01 TCGA-A2-A04R-01 - - Unknown Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx Frame_Shift_Ins p.A336fs ACTL7B NM_006686 NP_006677 ACL7B_HUMAN Q9Y614 c.(1006-1008)GCCfs c.1006_1007insG 1 336 336 Frame_Shift_Ins p.A336fs ACTL7B NM_006686 NP_006677 ACL7B_HUMAN Q9Y614 c.(1006-1008)GCCfs c.1006_1007insG 1 336 336 9 111617204 111617205 - C INS ACTL7B NM_006686 human genbank 57_37b -1 reviewed frame_shift_ins c.1007_1006 p.A336fs 0.906:0.990 HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268 - no_errors diff --git a/core/src/test/resources/panCancerStudySummary/meta_CNA.txt b/core/src/test/resources/panCancerStudySummary/meta_CNA.txt deleted file mode 100755 index d77cc4b1a69..00000000000 --- a/core/src/test/resources/panCancerStudySummary/meta_CNA.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: multi_cancer_study -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -stable_id: gistic -show_profile_in_analysis_tab: true -profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC diff --git a/core/src/test/resources/panCancerStudySummary/meta_clinical.txt b/core/src/test/resources/panCancerStudySummary/meta_clinical.txt deleted file mode 100755 index d444715414d..00000000000 --- a/core/src/test/resources/panCancerStudySummary/meta_clinical.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: multi_cancer_study -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_clinical.txt diff --git a/core/src/test/resources/panCancerStudySummary/meta_mutations_extended.txt b/core/src/test/resources/panCancerStudySummary/meta_mutations_extended.txt deleted file mode 100755 index 34a709e75d7..00000000000 --- a/core/src/test/resources/panCancerStudySummary/meta_mutations_extended.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: multi_cancer_study -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations diff --git a/core/src/test/resources/panCancerStudySummary/meta_study.txt b/core/src/test/resources/panCancerStudySummary/meta_study.txt deleted file mode 100755 index 72b7fc77c6f..00000000000 --- a/core/src/test/resources/panCancerStudySummary/meta_study.txt +++ /dev/null @@ -1,7 +0,0 @@ -type_of_cancer: pan_cancer -cancer_study_identifier: multi_cancer_study -name: Multi Cancer Study Test -description: Multi Cancer Study Test -citation: TCGA, Nature 2012, ... -pmid: 23000897,26451490 -groups: PUBLIC;GDAC;SU2C-PI3K diff --git a/core/src/test/resources/protein_sample.txt b/core/src/test/resources/protein_sample.txt deleted file mode 100644 index 2b89a2ed6f9..00000000000 --- a/core/src/test/resources/protein_sample.txt +++ /dev/null @@ -1,2 +0,0 @@ -GENE_ID COMMON TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 -5728 PTEN positive~https://devtracker.mskcc.org/devtracker/TCGALookup.do?studyId=11&key=TCGA-13-0717 negative~https://devtracker.mskcc.org/devtracker/TCGALookup.do?studyId=11&key=TCGA-13-0720 heterogeneous~https://devtracker.mskcc.org/devtracker/TCGALookup.do?studyId=11&key=TCGA-13-0724 negative~https://devtracker.mskcc.org/devtracker/TCGALookup.do?studyId=11&key=TCGA-13-0725 diff --git a/core/src/test/resources/protein_sample_table.html b/core/src/test/resources/protein_sample_table.html deleted file mode 100644 index 7fb2b0497e9..00000000000 --- a/core/src/test/resources/protein_sample_table.html +++ /dev/null @@ -1,29 +0,0 @@ -

    PTEN

    - - - - - - - - - - - - - - - - - - - - - - - - - - -
    CasesMeasurementImage(s) *
    TCGA-13-0717positiveImage(s)
    TCGA-13-0720negativeImage(s)
    TCGA-13-0724heterogeneousImage(s)
    TCGA-13-0725negativeImage(s)
    -

    * Login required. diff --git a/core/src/test/resources/reference_genomes.txt b/core/src/test/resources/reference_genomes.txt deleted file mode 100644 index 91f2f96bfd2..00000000000 --- a/core/src/test/resources/reference_genomes.txt +++ /dev/null @@ -1,2 +0,0 @@ -#species name build_name nonN_bases URL release_date -mouse mm10 GRCm38 2652783500 http://hgdownload.cse.ucsc.edu/goldenPath/mm10 2011-12-01 00:00:00 \ No newline at end of file diff --git a/core/src/test/resources/seed_mini.sql b/core/src/test/resources/seed_mini.sql deleted file mode 100644 index e17819cfb51..00000000000 --- a/core/src/test/resources/seed_mini.sql +++ /dev/null @@ -1,590 +0,0 @@ --- --- Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. --- --- This library is distributed in the hope that it will be useful,but WITHOUT --- ANY WARRANTY,WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS --- FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder --- is on an "as is" basis,and Memorial Sloan-Kettering Cancer Center has no --- obligations to provide maintenance,support,updates,enhancements or --- modifications. In no event shall Memorial Sloan-Kettering Cancer Center be --- liable to any party for direct,indirect,special,incidental or --- consequential damages,including lost profits,arising out of the use of this --- software and its documentation,even if Memorial Sloan-Kettering Cancer --- Center has been advised of the possibility of such damage. --- --- This file is part of cBioPortal. --- --- cBioPortal is free software: you can redistribute it and/or modify --- it under the terms of the GNU Affero General Public License as --- published by the Free Software Foundation,either version 3 of the --- License. --- --- This program is distributed in the hope that it will be useful, --- but WITHOUT ANY WARRANTY; without even the implied warranty of --- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the --- GNU Affero General Public License for more details. --- --- You should have received a copy of the GNU Affero General Public License --- along with this program. If not,see . --- ---------------------------------------------------------------------------- --- A manually extracted subset of data for a small number of genes and samples from the BRCA --- data set. This is intended to be used during unit testing,to validate the portal APIs. --- In theory,it should be enough to run up a portal. --- --- Prepared by Stuart Watt -- 13th May 2015 - -SET SESSION sql_mode = 'ANSI_QUOTES'; - -DELETE FROM structural_variant; -DELETE FROM clinical_event_data; -DELETE FROM clinical_event; -DELETE FROM cosmic_mutation; -DELETE FROM copy_number_seg_file; -DELETE FROM copy_number_seg; -DELETE FROM sample_cna_event; -DELETE FROM cna_event; -DELETE FROM gistic_to_gene; -DELETE FROM gistic; -DELETE FROM mut_sig; -DELETE FROM clinical_attribute_meta; -DELETE FROM mutation; -DELETE FROM mutation_event; -DELETE FROM sample_profile; -DELETE FROM gene_panel; -DELETE FROM gene_panel_list; -DELETE FROM genetic_profile_samples; -DELETE FROM genetic_alteration; -DELETE FROM genetic_profile; -DELETE FROM gene_alias; -DELETE FROM gene; -DELETE FROM clinical_sample; -DELETE FROM sample; -DELETE FROM sample_list_list; -DELETE FROM sample_list; -DELETE FROM clinical_patient; -DELETE FROM patient; -DELETE FROM authorities; -DELETE FROM users; -DELETE FROM cancer_study; -DELETE FROM type_of_cancer; -DELETE FROM genetic_entity; - --- type_of_cancer -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('acc','Adrenocortical Carcinoma','Purple','ACC','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('acbc','Adenoid Cystic Breast Cancer','HotPink','ACBC','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('acyc','Adenoid Cystic Carcinoma','DarkRed','ACyC','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('aeca','Sweat Gland Carcinoma (Apocrine Eccrine Carcinoma)','Black','AECA','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('afx','Atypical Fibroxanthoma','Black','AFX','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('all','Pediatric Acute Lymphoid Leukemia','LightSalmon','ALL','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('aml','Acute Monocytic Leukemia','LightSalmon','AML-M5','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('blad','Bladder Urothelial Adenocarcinoma','Yellow','Bladder','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('blca','Bladder Urothelial Carcinoma','Yellow','Bladder','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('bpdcn','Blastic Plasmacytoid Dendritic Cell Neoplasm','LightSalmon','BPDCN','tissue'); -INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('brca','Breast Invasive Carcinoma','HotPink','Breast','tissue'); - --- reference_genome -INSERT INTO `reference_genome` VALUES (1,'human','hg19','GRCh37',2897310462,'http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips','2009-02-01'); -INSERT INTO `reference_genome` VALUES (2,'human','hg38','GRCh38',3049315783,'http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips','2013-12-01'); - --- cancer_study -INSERT INTO "cancer_study" ("CANCER_STUDY_ID","CANCER_STUDY_IDENTIFIER","TYPE_OF_CANCER_ID","NAME","DESCRIPTION","PUBLIC","PMID","CITATION","GROUPS","REFERENCE_GENOME_ID") -VALUES (1,'study_tcga_pub','brca','Breast Invasive Carcinoma (TCGA,Nature 2012)','The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal.',1,'23000897,26451490','TCGA,Nature 2012,...','SU2C-PI3K;PUBLIC;GDAC',1); - --- gene as genetic_entity -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,207,'AKT1','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,208,'AKT2','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,10000,'AKT3','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,369,'ARAF','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,472,'ATM','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,673,'BRAF','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,672,'BRCA1','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,675,'BRCA2','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,3265,'HRAS','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,3845,'KRAS','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,4893,'NRAS','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,51259,'TMEM216','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,282770,'OR10AG1','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,983,'CDK1','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,8085,'KMT2D','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); --- add genes for structural variant events -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,57670,'KIAA1549','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,27436,'EML4','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,238,'ALK','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,2115,'ETV1','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,7273,'TTN','protein-coding'); - --- for test panels 1 and 2 -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,3983,'ABLIM1','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,80070,'ADAMTS20','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,253559,'CADM2','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,1838,'DTNB','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,2648,'KAT2A','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,4437,'MSH3','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,4602,'MYB','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,440348,'NPIPB15','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,56914,'OTOR','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,27334,'P2RY10','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,9780,'PIEZO1','protein-coding'); -INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); -SET @max_entity_id = (Select MAX(ID) from genetic_entity); -INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,2261,'FGFR3','protein-coding'); - --- cna_event -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (20093,207,-2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (20092,207,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (26161,208,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (2774,10000,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (16668,472,-2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (16669,472,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (11284,673,-2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (11283,673,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (23934,672,-2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (23933,672,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (18460,675,-2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (18459,675,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (15117,3265,-2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (15118,3265,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (17280,3845,2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (1678,4893,-2); -INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (1677,4893,2); - --- cosmic_mutation -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('78883','17',41197784,'G','A','-','c.5503C>T',672,'R1835*',2,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('23923','17',41199686,'GC','G','-','c.5440delG',672,'A1814fs*20',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('24529','17',41201160,'A','AA','-','c.5383_5384insT',672,'S1796fs*34',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1577248','17',41201164,'C','A','-','c.5380G>T',672,'E1794*',2,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('35891','17',41209082,'G','GG','-','c.5263_5264insC',672,'Q1756fs*74',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('51256','17',41209095,'G','A','-','c.5251C>T',672,'R1751*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('24528','17',41215370,'C','A','-','c.5173G>T',672,'E1725*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('68967','17',41215913,'TC','T','-','c.5129delG',672,'G1710fs*4',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('95581','17',41223001,'C','A','-','c.4930G>T',672,'E1644*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('219051','17',41223106,'C','A','-','c.4825G>T',672,'E1609*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('78884','17',41226411,'G','A','-','c.4612C>T',672,'Q1538*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('187264','17',41226515,'G','T','-','c.4508C>A',672,'S1503*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('3983467','17',41228590,'G','A','-','c.4399C>T',672,'Q1467*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('979730','17',41234451,'G','A','-','c.4327C>T',672,'R1443*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('23959','17',41243685,'TC','T','-','c.3862delG',672,'E1288fs*19',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1302865','17',41243707,'G','A','-','c.3841C>T',672,'Q1281*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1577247','17',41243721,'A','T','-','c.3827T>A',672,'L1276*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('69203','17',41243753,'A','ATT','-','c.3794_3795insAA',672,'N1265fs*4',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1577246','17',41243781,'GTGTTC','G','-','c.3762_3766delGAACA',672,'K1254fs*11',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('112117','17',41243899,'A','ATAAGTTCT','-','c.3648_3649insAGAACTTA',672,'S1217fs*21',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1325059','17',41243984,'CCT','C','-','c.3562_3563delAG',672,'R1188fs*3',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('23931','17',41243998,'CTT','C','-','c.3548_3549delAA',672,'K1183fs*4',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1666857','17',41244021,'AC','A','-','c.3526_3526delG',672,'V1176fs*34',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('706227','17',41244070,'T','A','-','c.3478A>T',672,'K1160*',1,'BRCA1 truncating'); -INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1325058','17',41244082,'C','CATCTAACA','-','c.3465_3466insTGTTAGAT',672,'D1156fs*2',1,'BRCA1 truncating'); - --- gene_alias -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (207,'AKT'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (207,'CWS6'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (208,'HIHGHH'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (208,'PKBB'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (10000,'MPPH'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (10000,'MPPH2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (369,'A-RAF'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (369,'ARAF1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (472,'AT1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (472,'ATA'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (673,'B-RAF1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (673,'BRAF1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (672,'BRCAI'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (672,'BRCC1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (675,'BRCC2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (675,'BROVCA2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (675,'FACD'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3265,'C-BAS/HAS'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3265,'C-H-RAS'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3845,'C-K-RAS'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3845,'KRAS1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3845,'KRAS2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4893,'N-ras'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4893,'NCMS'); - --- for test panels 1 and 2 -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (56914,'FDP'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (56914,'MIAL1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'IGSF4D'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'Necl-3'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'NECL3'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'SynCAM 2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'synCAM2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4437,'MRP1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4437,'DUP'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4437,'FAP4'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (27334,'P2Y10'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (27334,'LYPSR2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (80070,'ADAM-TS20'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (80070,'GON-1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (80070,'ADAMTS-20'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'hGCN5'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'GCN5'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'GCN5L2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'PCAF-b'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'c-myb_CDS'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'Cmyb'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'c-myb'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'efg'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (440348,'A-761H5.4'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (440348,'NPIPL2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'LIMAB1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'abLIM-1'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'ABLIM'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'LIMATIN'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'FAM38A'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'Mib'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'LMPH3'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'DHS'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'JTK4'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'HSFGFR3EX'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'ACH'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'CEK2'); -INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'CD333'); - -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(207,'14q32.33',105235686,105262088,14,1); -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(207,'14q32.33',104769349,104795751,14,2); -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(208,'19q13.2',40736224,40791443,19,1); -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(208,'19q13.2',40230317,40285536,19,2); -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(51259,'11q12.2',61159159,61166335,11,1); -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(51259,'11q12.2',61391687,61398863,11,2); -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(282770,'11q12.1',55734975,55735990,11,1); -INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,START,END,CHR,REFERENCE_GENOME_ID) VALUES(282770,'11q12.1',55967558,55968463,11,2); - -INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (2,'study_tcga_pub_gistic',1,'COPY_NUMBER_ALTERATION','DISCRETE','Putative copy-number alterations from GISTIC','Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.','1'); -INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (3,'study_tcga_pub_mrna',1,'MRNA_EXPRESSION','Z-SCORE','mRNA expression (microarray)','Expression levels (Agilent microarray).','0'); -INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (4,'study_tcga_pub_log2CNA',1,'COPY_NUMBER_ALTERATION','LOG2-VALUE','Log2 copy-number values','Log2 copy-number values for each gene (from Affymetrix SNP6).','0'); -INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (5,'study_tcga_pub_methylation_hm27',1,'METHYLATION','CONTINUOUS','Methylation (HM27)','Methylation beta-values (HM27 platform). For genes with multiple methylation probes,the probe least correlated with expression is selected.','0'); -INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (6,'study_tcga_pub_mutations',1,'MUTATION_EXTENDED','MAF','Mutations','Mutation data from whole exome sequencing.','1'); -INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (7,'study_tcga_pub_structural_variants',1,'STRUCTURAL_VARIANT','SV','Structural Variants','Structural Variants test data.','1'); -INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (8,'study_tcga_pub_cna_long',1,'COPY_NUMBER_ALTERATION','DISCRETE_LONG','CNA values','CNA values dummy data','1'); - --- gene_panel -INSERT INTO gene_panel (INTERNAL_ID,STABLE_ID,DESCRIPTION) VALUES (1,'TESTPANEL_CNA_DISCRETE_LONG_FORMAT','Some test panel'); - --- genetic_alteration -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'0,0,1,2,0,1,1,1,0,1,1,1,0,1,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'0,0,0,0,0,0,0,0,-1,0,0,0,-1,0,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'0,0,0,1,0,0,0,1,0,0,0,2,0,2,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0,0,0,0,0,0,1,0,0,0,0,-1,0,0,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'0,0,0,1,0,0,-1,1,1,0,1,2,2,0,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'0,-1,-1,0,0,-1,0,1,0,-1,-1,1,-1,-1,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'0,-1,0,-1,0,0,0,0,-1,1,-1,0,0,0,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'0,0,0,0,0,1,0,-1,0,-1,-1,0,-1,0,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0,0,0,1,0,0,0,0,0,0,-1,0,0,0,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'0,-1,0,0,0,0,-1,0,1,0,-1,1,-1,-1,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'-0.473833333333333,1.51866666666667,0.148333333333333,-0.187666666666667,0.914,-0.664333333333333,-1.70783333333333,0.976,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'-1.102375,-0.24375,0.018625,-0.157,0.33075,1.008,0.68175,-0.664875,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'-1.22235714285714,-0.592571428571429,-0.176642857142857,-0.310428571428571,-1.19892857142857,-0.670142857142857,0.0779285714285714,-0.302642857142857,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0.068,-0.062,-0.167833333333333,0.511666666666667,2.02066666666667,0.389166666666667,-0.724666666666666,0.9485,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 369),'-1.12475,-0.30675,0.1805,-0.59775,0.16625,0.402,0.243,-0.996,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'-0.17075,0.4045,0.185333333333333,0.4285,1.67616666666667,0.238,0.469833333333333,2.15883333333333,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'-1.50341666666667,-1.92183333333333,-1.75541666666667,-1.57325,-1.02958333333333,-1.39791666666667,-1.51483333333333,-2.07091666666667,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'-1.91125,-2.0595,-1.22825,-1.319,-4.16675,-1.187875,0.280625,-0.13075,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'-1.66108333333333,-1.38791666666667,-1.92483333333333,-1.65625,-0.35825,-1.99566666666667,-0.136416666666667,-0.70975,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0.2305,0.56,-0.10225,-0.0855,-0.012,0.138,0.141,0.6095,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'-0.57075,-1.3405,-1.541,-0.40475,0.629,-1.2315,0.768,-0.033,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'0.017,0.032,0.872,0.704,0.009,0.485,0.848,0.685,-0.270,1.054,0.658,0.455,0.256,0.628,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'-0.005,-0.003,-0.022,0.072,-0.042,0.015,0.045,0.026,-0.441,-0.030,0.009,0.154,-0.348,0.011,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'0.045,-0.048,0.043,0.324,-0.064,0.036,0.147,0.404,0.112,0.012,0.043,1.418,0.069,1.670,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0.003,-0.043,0.009,0.009,-0.043,0.031,0.411,-0.048,0.049,-0.030,0.056,-0.695,-0.022,-0.001,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'-0.009,0.001,0.006,0.379,0.022,-0.010,-0.473,1.172,2.823,0.014,0.339,1.450,3.160,0.026,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'-0.006,-0.500,-0.462,-0.013,-0.003,-0.448,0.135,0.522,0.211,-0.578,-0.350,0.655,-0.449,-0.668,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'0.011,-0.420,0.014,-0.341,-0.019,0.020,0.032,-0.052,-0.453,0.455,-0.318,0.278,0.240,0.034,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'0.044,-0.082,0.027,-0.003,-0.012,0.486,-0.300,-0.397,-0.284,-0.547,-0.301,0.218,-0.389,-0.011,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0.015,0.005,0.005,0.344,-0.011,0.171,0.140,-0.013,0.021,0.010,-0.385,-0.177,0.075,0.002,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'-0.005,-0.502,-0.240,0.016,0.022,-0.029,-0.319,0.004,1.020,-0.024,-0.366,0.768,-0.397,-0.667,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'0.841525757,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'0.134488708,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'0.072712077,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0.039372,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 369),'0.125441004,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'0.049338479,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'0.025402093,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'0.105977072,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'0.066638638,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0.020369562,'); -INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'0.793930197,'); - --- genetic_profile_samples -INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (2,'1,2,3,4,5,6,7,8,9,10,11,12,13,14,'); -INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (3,'2,3,6,8,9,10,12,13,'); -INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (4,'1,2,3,4,5,6,7,8,9,10,11,12,13,14,'); -INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (5,'2,'); - --- patient -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (1,'TCGA-A1-A0SB',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (2,'TCGA-A1-A0SD',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (3,'TCGA-A1-A0SE',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (4,'TCGA-A1-A0SF',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (5,'TCGA-A1-A0SG',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (6,'TCGA-A1-A0SH',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (7,'TCGA-A1-A0SI',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (8,'TCGA-A1-A0SJ',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (9,'TCGA-A1-A0SK',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (10,'TCGA-A1-A0SM',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (11,'TCGA-A1-A0SN',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (12,'TCGA-A1-A0SO',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (13,'TCGA-A1-A0SP',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (14,'TCGA-A1-A0SQ',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (15,'TCGA-XX-0800',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (16,'TCGA-XX-0900',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (17,'TCGA-AA-3664',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (18,'TCGA-AA-3665',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (19,'TCGA-A2-A04U',1); -INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (20,'TCGA-A1-A0SB',1); - --- sample -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (1,'TCGA-A1-A0SB-01','Primary Solid Tumor',1); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (2,'TCGA-A1-A0SD-01','Primary Solid Tumor',2); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (3,'TCGA-A1-A0SE-01','Primary Solid Tumor',3); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (4,'TCGA-A1-A0SF-01','Primary Solid Tumor',4); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (5,'TCGA-A1-A0SG-01','Primary Solid Tumor',5); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (6,'TCGA-A1-A0SH-01','Primary Solid Tumor',6); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (7,'TCGA-A1-A0SI-01','Primary Solid Tumor',7); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (8,'TCGA-A1-A0SJ-01','Primary Solid Tumor',8); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (9,'TCGA-A1-A0SK-01','Primary Solid Tumor',9); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (10,'TCGA-A1-A0SM-01','Primary Solid Tumor',10); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (11,'TCGA-A1-A0SN-01','Primary Solid Tumor',11); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (12,'TCGA-A1-A0SO-01','Primary Solid Tumor',12); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (13,'TCGA-A1-A0SP-01','Primary Solid Tumor',13); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (14,'TCGA-A1-A0SQ-01','Primary Solid Tumor',14); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (15,'TCGA-XX-0800-01','Primary Solid Tumor',15); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (16,'TCGA-XX-0900-01','Primary Solid Tumor',16); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (17,'TCGA-AA-3664-01','Primary Solid Tumor',17); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (18,'TCGA-AA-3665-01','Primary Solid Tumor',18); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (19,'TCGA-A1-A0SB-02','Primary Solid Tumor',1); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (20,'TCGA-A2-A04U-11','Solid Tissues Normal',19); -INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (21,'TCGA-A1-A0SB-11','Solid Tissues Normal',20); - --- mutation_event -INSERT INTO "mutation_event" ("MUTATION_EVENT_ID","ENTREZ_GENE_ID","CHR","START_POSITION","END_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","PROTEIN_CHANGE","MUTATION_TYPE","NCBI_BUILD","STRAND","VARIANT_TYPE","DB_SNP_RS","DB_SNP_VAL_STATUS","REFSEQ_MRNA_ID","CODON_CHANGE","UNIPROT_ACCESSION","PROTEIN_POS_START","PROTEIN_POS_END","CANONICAL_TRANSCRIPT","KEYWORD") VALUES (2038,672,'17',41244748,41244748,'G','A','Q934*','Nonsense_Mutation','37','+','SNP','rs80357223','unknown','NM_007294','c.(2800-2802)CAG>TAG','P38398',934,934,1,'BRCA1 truncating'); -INSERT INTO "mutation_event" ("MUTATION_EVENT_ID","ENTREZ_GENE_ID","CHR","START_POSITION","END_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","PROTEIN_CHANGE","MUTATION_TYPE","NCBI_BUILD","STRAND","VARIANT_TYPE","DB_SNP_RS","DB_SNP_VAL_STATUS","REFSEQ_MRNA_ID","CODON_CHANGE","UNIPROT_ACCESSION","PROTEIN_POS_START","PROTEIN_POS_END","CANONICAL_TRANSCRIPT","KEYWORD") VALUES (22604,672,'17',41258504,41258504,'A','C','C61G','Missense_Mutation','37','+','SNP','rs28897672','byCluster','NM_007294','c.(181-183)TGT>GGT','P38398',61,61,1,'BRCA1 C61 missense'); -INSERT INTO "mutation_event" ("MUTATION_EVENT_ID","ENTREZ_GENE_ID","CHR","START_POSITION","END_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","PROTEIN_CHANGE","MUTATION_TYPE","NCBI_BUILD","STRAND","VARIANT_TYPE","DB_SNP_RS","DB_SNP_VAL_STATUS","REFSEQ_MRNA_ID","CODON_CHANGE","UNIPROT_ACCESSION","PROTEIN_POS_START","PROTEIN_POS_END","CANONICAL_TRANSCRIPT","KEYWORD") VALUES (2039,672,'17',41276033,41276033,'C','T','C27_splice','Splice_Site','37','+','SNP','rs80358010','byCluster','NM_007294','c.e2+1','NA',-1,-1,1,'BRCA1 truncating'); - --- mutation -INSERT INTO "mutation" ("MUTATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","ENTREZ_GENE_ID","CENTER","SEQUENCER","MUTATION_STATUS","VALIDATION_STATUS","TUMOR_SEQ_ALLELE1","TUMOR_SEQ_ALLELE2","MATCHED_NORM_SAMPLE_BARCODE","MATCH_NORM_SEQ_ALLELE1","MATCH_NORM_SEQ_ALLELE2","TUMOR_VALIDATION_ALLELE1","TUMOR_VALIDATION_ALLELE2","MATCH_NORM_VALIDATION_ALLELE1","MATCH_NORM_VALIDATION_ALLELE2","VERIFICATION_STATUS","SEQUENCING_PHASE","SEQUENCE_SOURCE","VALIDATION_METHOD","SCORE","BAM_FILE","TUMOR_ALT_COUNT","TUMOR_REF_COUNT","NORMAL_ALT_COUNT","NORMAL_REF_COUNT") VALUES (2038,6,6,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','G','A','TCGA-A1-A0SH-10A-03D-A099-09','G','A','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1); -INSERT INTO "mutation" ("MUTATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","ENTREZ_GENE_ID","CENTER","SEQUENCER","MUTATION_STATUS","VALIDATION_STATUS","TUMOR_SEQ_ALLELE1","TUMOR_SEQ_ALLELE2","MATCHED_NORM_SAMPLE_BARCODE","MATCH_NORM_SEQ_ALLELE1","MATCH_NORM_SEQ_ALLELE2","TUMOR_VALIDATION_ALLELE1","TUMOR_VALIDATION_ALLELE2","MATCH_NORM_VALIDATION_ALLELE1","MATCH_NORM_VALIDATION_ALLELE2","VERIFICATION_STATUS","SEQUENCING_PHASE","SEQUENCE_SOURCE","VALIDATION_METHOD","SCORE","BAM_FILE","TUMOR_ALT_COUNT","TUMOR_REF_COUNT","NORMAL_ALT_COUNT","NORMAL_REF_COUNT") VALUES (22604,6,6,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','A','C','TCGA-A1-A0SH-10A-03D-A099-09','A','C','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1); -INSERT INTO "mutation" ("MUTATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","ENTREZ_GENE_ID","CENTER","SEQUENCER","MUTATION_STATUS","VALIDATION_STATUS","TUMOR_SEQ_ALLELE1","TUMOR_SEQ_ALLELE2","MATCHED_NORM_SAMPLE_BARCODE","MATCH_NORM_SEQ_ALLELE1","MATCH_NORM_SEQ_ALLELE2","TUMOR_VALIDATION_ALLELE1","TUMOR_VALIDATION_ALLELE2","MATCH_NORM_VALIDATION_ALLELE1","MATCH_NORM_VALIDATION_ALLELE2","VERIFICATION_STATUS","SEQUENCING_PHASE","SEQUENCE_SOURCE","VALIDATION_METHOD","SCORE","BAM_FILE","TUMOR_ALT_COUNT","TUMOR_REF_COUNT","NORMAL_ALT_COUNT","NORMAL_REF_COUNT") VALUES (2039,6,12,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','T','T','TCGA-A1-A0SO-10A-03D-A099-09','T','T','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1); - --- sample_list -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (1,'study_tcga_pub_all','other',1,'All Tumors','All tumor samples (14 samples)'); -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (2,'study_tcga_pub_acgh','other',1,'Tumors aCGH','All tumors with aCGH data (778 samples)'); -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (3,'study_tcga_pub_cnaseq','other',1,'Tumors with sequencing and aCGH data','All tumor samples that have CNA and sequencing data (482 samples)'); -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (4,'study_tcga_pub_complete','other',1,'Complete samples (mutations,copy-number,expression)','Samples with complete data (463 samples)'); -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (5,'study_tcga_pub_log2CNA','other',1,'Tumors log2 copy-number','All tumors with log2 copy-number data (778 samples)'); -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (6,'study_tcga_pub_methylation_hm27','other',1,'Tumors with methylation data','All samples with methylation (HM27) data (311 samples)'); -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (7,'study_tcga_pub_mrna','other',1,'Tumors with mRNA data (Agilent microarray)','All samples with mRNA expression data (526 samples)'); -INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (8,'study_tcga_pub_sequenced','other',1,'Sequenced Tumors','All sequenced samples (507 samples)'); - --- sample_list_list -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,1); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,3); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,4); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,5); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,6); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,7); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,8); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,9); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,10); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,11); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,12); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,13); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,14); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,1); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,3); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,4); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,5); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,6); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,7); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,8); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,9); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,10); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,11); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,12); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,13); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,14); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,3); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,6); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,8); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,9); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,10); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,12); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,3); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,6); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,8); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,9); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,10); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,12); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,1); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,3); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,4); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,5); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,6); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,7); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,8); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,9); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,10); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,11); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,12); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,13); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,14); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (6,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,3); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,6); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,8); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,9); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,10); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,12); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,13); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,2); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,3); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,6); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,8); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,9); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,10); -INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,12); - --- sample_cna_event -INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (2774,4,2); -INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (17280,12,2); -INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (26161,12,2); -INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (17280,13,2); -INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (26161,14,2); - --- alteration_driver_annotation - -- from sample_cna_event -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (2774,2,4,'Putative_Driver','Pathogenic','Tier 1','Highly Actionable'); -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (17280,2,12,'Putative_Driver','Pathogenic','Tier 1','Highly Actionable'); -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (26161,2,12,'Putative_Passenger','Pathogenic','Tier 2','Potentially Actionable'); -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (17280,2,13,'Putative_Passenger','Pathogenic','Tier 1','Highly Actionable'); -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (26161,2,14,'Putative_Driver','Pathogenic','Tier 2','Potentially Actionable'); - -- from mutation -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (26161,6,6,'Putative_Driver','Pathogenic','Tier 1','Highly Actionable'); -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (22604,6,6,'Putative_Passenger','Pathogenic','Tier 2','Potentially Actionable'); -INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (2039,6,12,'Putative_Passenger','Pathogenic','Tier 1','Highly Actionable'); - --- sample_profile -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (1,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (1,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,5,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,6,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,6,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (4,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (4,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (5,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (5,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,6,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (7,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (7,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,6,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,6,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,6,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (11,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (11,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,6,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (13,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (13,3,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (13,4,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (14,2,NULL); -INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (14,4,NULL); - --- users -INSERT INTO users (EMAIL,NAME,ENABLED) values ('jami@gmail.com','Jami Bax',1); -INSERT INTO users (EMAIL,NAME,ENABLED) values ('Lonnie@openid.org','Lonnie Penaloza',0); -INSERT INTO users (EMAIL,NAME,ENABLED) values ('Dhorak@yahoo.com','Darryl Horak',1); - --- authorities -INSERT INTO authorities (EMAIL,AUTHORITY) values ('jami@gmail.com','ROLE_USER'); -INSERT INTO authorities (EMAIL,AUTHORITY) values ('Lonnie@openid.org','ROLE_USER'); -INSERT INTO authorities (EMAIL,AUTHORITY) values ('Dhorak@yahoo.com','ROLE_USER'); -INSERT INTO authorities (EMAIL,AUTHORITY) values ('Dhorak@yahoo.com','ROLE_MANAGER'); - diff --git a/core/src/test/resources/segment/data_cna_hg19.seg b/core/src/test/resources/segment/data_cna_hg19.seg deleted file mode 100644 index 1bffb06c470..00000000000 --- a/core/src/test/resources/segment/data_cna_hg19.seg +++ /dev/null @@ -1,11 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-3C-AAAU-01 1 3218610 95674710 53225 0.0055 -TCGA-3C-AAAU-01 1 95676511 95676518 2 -1.6636 -TCGA-3C-AAAU-01 1 95680124 167057183 24886 0.0053 -TCGA-3C-AAAU-01 1 167057495 167059336 3 -1.0999 -TCGA-3C-AAAU-01 1 167059760 181602002 9213 -8e-04 -TCGA-3C-AAAU-01 1 181603120 181609567 6 -1.2009 -TCGA-3C-AAAU-01 1 181610685 201473647 12002 0.0055 -TCGA-3C-AAAU-10 1 201474400 201474544 2 -1.4235 -TCGA-3C-AAUU-01 1 201475220 247813706 29781 -4e-04 -TCGA-3C-AAUU-01 1 201475220 201475220 29781 -4e-04 diff --git a/core/src/test/resources/segment/meta_cna_hg19_seg.txt b/core/src/test/resources/segment/meta_cna_hg19_seg.txt deleted file mode 100644 index c43c774e4ca..00000000000 --- a/core/src/test/resources/segment/meta_cna_hg19_seg.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: testnewseg -reference_genome_id: hg19 -description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals) from TCGA. -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: SEG -data_filename: brca_tcga_data_cna_hg19.seg diff --git a/core/src/test/resources/sequenced_cases.txt b/core/src/test/resources/sequenced_cases.txt deleted file mode 100644 index b5cb6d5f96b..00000000000 --- a/core/src/test/resources/sequenced_cases.txt +++ /dev/null @@ -1,91 +0,0 @@ -TCGA-02-0001 -TCGA-02-0003 -TCGA-02-0006 -TCGA-02-0007 -TCGA-02-0009 -TCGA-02-0010 -TCGA-02-0011 -TCGA-02-0014 -TCGA-02-0021 -TCGA-02-0024 -TCGA-02-0027 -TCGA-02-0028 -TCGA-02-0033 -TCGA-02-0034 -TCGA-02-0037 -TCGA-02-0038 -TCGA-02-0043 -TCGA-02-0046 -TCGA-02-0047 -TCGA-02-0052 -TCGA-02-0054 -TCGA-02-0055 -TCGA-02-0057 -TCGA-02-0058 -TCGA-02-0060 -TCGA-02-0064 -TCGA-02-0069 -TCGA-02-0071 -TCGA-02-0074 -TCGA-02-0075 -TCGA-02-0080 -TCGA-02-0083 -TCGA-02-0085 -TCGA-02-0086 -TCGA-02-0089 -TCGA-02-0099 -TCGA-02-0102 -TCGA-02-0107 -TCGA-02-0113 -TCGA-02-0114 -TCGA-02-0115 -TCGA-02-0116 -TCGA-06-0122 -TCGA-06-0124 -TCGA-06-0125 -TCGA-06-0126 -TCGA-06-0128 -TCGA-06-0129 -TCGA-06-0130 -TCGA-06-0132 -TCGA-06-0133 -TCGA-06-0137 -TCGA-06-0138 -TCGA-06-0139 -TCGA-06-0141 -TCGA-06-0143 -TCGA-06-0145 -TCGA-06-0147 -TCGA-06-0148 -TCGA-06-0154 -TCGA-06-0156 -TCGA-06-0157 -TCGA-06-0158 -TCGA-06-0166 -TCGA-06-0168 -TCGA-06-0169 -TCGA-06-0171 -TCGA-06-0173 -TCGA-06-0174 -TCGA-06-0176 -TCGA-06-0178 -TCGA-06-0184 -TCGA-06-0185 -TCGA-06-0187 -TCGA-06-0188 -TCGA-06-0189 -TCGA-06-0190 -TCGA-06-0195 -TCGA-06-0197 -TCGA-06-0201 -TCGA-06-0206 -TCGA-06-0208 -TCGA-06-0209 -TCGA-06-0210 -TCGA-06-0211 -TCGA-06-0213 -TCGA-06-0214 -TCGA-06-0219 -TCGA-06-0221 -TCGA-06-0237 -TCGA-06-0241 diff --git a/core/src/test/resources/sequenced_genes.txt b/core/src/test/resources/sequenced_genes.txt deleted file mode 100644 index f1f2452600c..00000000000 --- a/core/src/test/resources/sequenced_genes.txt +++ /dev/null @@ -1,601 +0,0 @@ -2 -12 -21 -25 -87 -100 -133 -158 -182 -199 -207 -230 -238 -267 -284 -301 -302 -310 -324 -331 -332 -358 -369 -387 -405 -472 -529 -545 -558 -572 -575 -577 -581 -595 -596 -598 -608 -613 -634 -637 -638 -654 -657 -658 -667 -672 -673 -675 -701 -710 -829 -830 -831 -842 -857 -862 -867 -891 -894 -898 -943 -998 -1017 -1019 -1021 -1024 -1027 -1028 -1029 -1030 -1031 -1033 -1050 -1063 -1080 -1103 -1111 -1116 -1117 -1123 -1192 -1271 -1277 -1278 -1281 -1292 -1316 -1398 -1410 -1432 -1436 -1454 -1499 -1512 -1540 -1571 -1576 -1594 -1608 -1613 -1621 -1641 -1662 -1755 -1785 -1793 -1804 -1869 -1876 -1903 -1956 -1969 -1977 -1993 -1996 -2014 -2033 -2042 -2043 -2045 -2060 -2064 -2065 -2113 -2171 -2173 -2185 -2202 -2241 -2246 -2249 -2254 -2260 -2261 -2263 -2308 -2309 -2313 -2321 -2324 -2335 -2475 -2549 -2550 -2621 -2625 -2691 -2729 -2735 -2736 -2737 -2765 -2770 -2778 -2885 -2887 -2891 -2896 -2909 -2956 -2993 -2994 -2995 -3002 -3014 -3055 -3082 -3083 -3091 -3092 -3133 -3135 -3148 -3159 -3211 -3213 -3214 -3218 -3265 -3312 -3320 -3337 -3364 -3371 -3397 -3399 -3452 -3480 -3485 -3486 -3596 -3600 -3611 -3621 -3635 -3643 -3667 -3680 -3683 -3685 -3688 -3689 -3690 -3702 -3717 -3725 -3741 -3791 -3815 -3821 -3838 -3845 -3895 -3916 -3932 -3939 -3956 -3958 -3959 -3977 -4057 -4067 -4087 -4088 -4089 -4094 -4100 -4129 -4133 -4139 -4176 -4179 -4193 -4194 -4221 -4223 -4233 -4234 -4255 -4282 -4292 -4303 -4313 -4318 -4324 -4330 -4342 -4436 -4440 -4478 -4507 -4595 -4599 -4601 -4609 -4613 -4643 -4683 -4705 -4753 -4763 -4829 -4832 -4837 -4846 -4851 -4893 -4916 -4920 -4926 -4974 -4982 -5045 -5052 -5054 -5079 -5080 -5111 -5155 -5156 -5159 -5164 -5170 -5287 -5290 -5292 -5295 -5296 -5305 -5324 -5326 -5371 -5378 -5395 -5423 -5451 -5465 -5468 -5501 -5515 -5522 -5528 -5551 -5576 -5578 -5579 -5580 -5582 -5583 -5584 -5585 -5587 -5588 -5590 -5591 -5594 -5595 -5598 -5599 -5600 -5601 -5602 -5603 -5609 -5621 -5629 -5650 -5727 -5728 -5747 -5764 -5770 -5771 -5781 -5881 -5894 -5908 -5925 -5934 -5947 -5966 -5979 -6093 -6098 -6117 -6146 -6184 -6196 -6197 -6224 -6251 -6252 -6282 -6286 -6302 -6383 -6416 -6469 -6497 -6502 -6505 -6506 -6514 -6566 -6608 -6635 -6646 -6656 -6657 -6664 -6678 -6693 -6696 -6714 -6717 -6722 -6733 -6751 -6772 -6774 -6790 -6792 -6794 -6795 -6850 -6855 -6872 -6876 -6927 -6935 -6938 -7015 -7037 -7048 -7076 -7077 -7122 -7133 -7150 -7153 -7157 -7248 -7249 -7272 -7374 -7391 -7392 -7408 -7409 -7410 -7422 -7428 -7465 -7472 -7474 -7476 -7490 -7507 -7533 -7561 -7832 -7852 -7869 -7980 -7982 -8021 -8031 -8038 -8073 -8091 -8115 -8295 -8379 -8408 -8445 -8451 -8503 -8505 -8527 -8650 -8651 -8751 -8771 -8795 -8805 -8825 -8826 -8872 -8877 -8899 -9020 -9064 -9131 -9168 -9173 -9201 -9211 -9212 -9314 -9315 -9321 -9371 -9401 -9518 -9545 -9564 -9580 -9681 -9712 -9757 -9777 -9784 -9833 -9877 -9950 -9990 -10000 -10006 -10018 -10102 -10106 -10135 -10161 -10165 -10188 -10215 -10257 -10393 -10446 -10451 -10457 -10570 -10612 -10630 -10677 -10746 -10752 -10763 -10882 -10912 -10956 -10991 -11200 -11202 -11344 -22954 -23161 -23235 -23239 -23321 -23480 -23491 -23509 -23522 -23532 -23786 -25775 -25805 -25865 -25895 -25907 -25980 -26002 -26019 -26038 -26511 -26524 -27075 -27148 -27201 -27352 -27440 -29108 -29110 -30014 -51050 -51079 -51147 -51230 -51347 -51592 -51684 -51701 -51765 -53335 -54518 -54861 -54900 -55023 -55294 -55351 -55526 -55740 -55914 -56672 -57007 -57037 -57120 -57188 -57591 -57634 -57724 -57787 -57798 -60561 -64919 -65012 -65059 -79837 -79858 -80324 -81608 -83596 -84446 -84919 -85366 -92979 -114793 -115557 -116448 -116986 -136991 -138474 -140688 -140706 -147339 -152110 -160851 -168374 -170825 -171017 -171023 -196403 -225689 -259266 -283455 -386653 -399473 -402176 -653145 -728712 diff --git a/core/src/test/resources/splitMutationsData/data_mutations_extended.txt b/core/src/test/resources/splitMutationsData/data_mutations_extended.txt deleted file mode 100644 index 882e13d8c16..00000000000 --- a/core/src/test/resources/splitMutationsData/data_mutations_extended.txt +++ /dev/null @@ -1,8 +0,0 @@ -#sequenced_samples: TCGA-AA-3664-01 TCGA-AA-3665-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB -TMEM216 51259 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr11 60921958 60921958 Nonsense_Mutation G61G -- -- -- -ACTN3 89 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Somatic Illumina GAIIx chr11 66075660 66075660 Missense_Mutation S116R medium mutationassessor.org/?cm=msa&ty=f&p=ACTN3_HUMAN&rb=46&re=149&var=S116R mutationassessor.org/pdb.php?prot=ACTN3_HUMAN&from=46&to=149&var=S116R -CLEC7A 64581 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Germline Illumina GAIIx chr12 10162443 10162443 Missense_Mutation T209A neutral mutationassessor.org/?cm=msa&ty=f&p=CLC7A_HUMAN&rb=137&re=243&var=T209A mutationassessor.org/pdb.php?prot=CLC7A_HUMAN&from=137&to=243&var=T209A -TAS2R10 50839 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 10869904 10869904 Missense_Mutation G78S medium mutationassessor.org/?cm=msa&ty=f&p=T2R10_HUMAN&rb=1&re=296&var=G78S -GPR19 2842 broad.mit.edu TCGA-AA-3664-01 Unknown valid Germline Illumina GAIIx chr12 12706312 12706312 Nonsense_Mutation L113P high mutationassessor.org/?cm=msa&ty=f&p=GPR19_HUMAN&rb=82&re=330&var=L113P mutationassessor.org/pdb.php?prot=GPR19_HUMAN&from=82&to=330&var=L113P -SLC38A2 54407 broad.mit.edu TCGA-AA-3664-01 Unknown Unknown Somatic Illumina GAIIx chr12 45042571 45042571 Missense_Mutation T433A low mutationassessor.org/?cm=msa&ty=f&p=S38A2_HUMAN&rb=69&re=495&var=T433A diff --git a/core/src/test/resources/splitMutationsData/data_mutations_extended_continued.txt b/core/src/test/resources/splitMutationsData/data_mutations_extended_continued.txt deleted file mode 100644 index 54d8004cad7..00000000000 --- a/core/src/test/resources/splitMutationsData/data_mutations_extended_continued.txt +++ /dev/null @@ -1,4 +0,0 @@ -#sequenced_samples: TCGA-AA-3664-01 TCGA-AA-3665-01 -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.PDB -SP1 6667 broad.mit.edu TCGA-AA-3665-01 Unknown valid Somatic Illumina GAIIx chr12 52063536 52063536 Missense_Mutation A513V low mutationassessor.org/?cm=msa&ty=f&p=SP1_HUMAN&rb=401&re=600&var=A513V -OR10AG1 282770 broad.mit.edu TCGA-AA-3664-01 Unknown valid Somatic Illumina GAIIx chr11 55492179 55492179 Missense_Mutation R113C high mutationassessor.org/?cm=msa&ty=f&p=O10AG_HUMAN&rb=32&re=281&var=R113C mutationassessor.org/pdb.php?prot=O10AG_HUMAN&from=32&to=281&var=R113C diff --git a/core/src/test/resources/splitMutationsData/meta_mutations_extended.txt b/core/src/test/resources/splitMutationsData/meta_mutations_extended.txt deleted file mode 100644 index 5aa1eed1048..00000000000 --- a/core/src/test/resources/splitMutationsData/meta_mutations_extended.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: study_tcga_pub -cancer_type_id: breast -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: breast_mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations diff --git a/core/src/test/resources/supp-genes.txt b/core/src/test/resources/supp-genes.txt deleted file mode 100644 index 936538ae862..00000000000 --- a/core/src/test/resources/supp-genes.txt +++ /dev/null @@ -1,4 +0,0 @@ -#This file includes supplemental/non-standard gene symbols, such as isoforms -CDKN2Ap16INK4A protein-coding 9p21 468 -CDKN2Ap14ARF protein-coding 9p21 396 -EGFRVIII protein-coding 7p12 2115 diff --git a/core/src/test/resources/tabDelimitedData/data_expression2.txt b/core/src/test/resources/tabDelimitedData/data_expression2.txt deleted file mode 100644 index a62a65250fc..00000000000 --- a/core/src/test/resources/tabDelimitedData/data_expression2.txt +++ /dev/null @@ -1,31 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id SAMPLE1 SAMPLE2 SAMPLE3 -# will be loaded -TESTTNF 999997124 770 0 220 -TESTNAT1 999999999 0 0 3 -NA 999991111 0 2 8 -NA 0 0 9940 -TESTphosphoprotein 0 0 4 -# duplicates based on Entrez Id, will be skipped: -NA 999997124 0 2 7 -TESTTNFF 999997124 0 1 5 -# wrong entrez Id, will be skipped: -TESTTNFF 999991234 0 1 6 -TESTphosphoprotein -99999948 0 0 4 -TESTphosphoprotein 999992222 0 2 10 -TESTNAT1 999993333 0 5 11 -TEST10q23del 999994444 0 5 12 -1 999999991 0 1 13 -TESTWASH3P 999374739 0 2 14 -TESTWASH3P 999374739 0 2 27 -TESTABCA2 ABCA1 0 5 15 -NA ABCA1 0 5 16 -TESTphosphoprotein ABCA1 0 5 17 -TESTNAT1 ABCA1 0 5 18 -TEST10q23del ABCA1 0 5 19 -1 ABCA1 0 5 20 -TESTACAA1 NA 0 5 21 -NA NA 0 5 22 -TESTphosphoprotein NA 0 5 23 -TESTNAT1 NA 0 5 24 -TEST10q23del NA 0 5 25 -1 NA 0 5 26 diff --git a/core/src/test/resources/tabDelimitedData/data_patient_generic_assay.txt b/core/src/test/resources/tabDelimitedData/data_patient_generic_assay.txt deleted file mode 100644 index 3b3e376b63b..00000000000 --- a/core/src/test/resources/tabDelimitedData/data_patient_generic_assay.txt +++ /dev/null @@ -1,3 +0,0 @@ -ENTITY_STABLE_ID name description TCGA-A1-A0SB TCGA-A1-A0SD -test_patient_generic_assay_1 test_patient_generic_assay_1 test_patient_generic_assay_1 0.370266873 0.010373016 -test_patient_generic_assay_2 test_patient_generic_assay_2 test_patient_generic_assay_2 0.002709404 0.009212318 \ No newline at end of file diff --git a/core/src/test/resources/tabDelimitedData/data_rppa.txt b/core/src/test/resources/tabDelimitedData/data_rppa.txt deleted file mode 100644 index 1d559f4accc..00000000000 --- a/core/src/test/resources/tabDelimitedData/data_rppa.txt +++ /dev/null @@ -1,14 +0,0 @@ -Composite.Element.REF SAMPLE1 SAMPLE2 SAMPLE3 SAMPLE4 -TESTYWHAE|14-3-3_epsilon 1.5 0 0 2 -TESTEIF4EBP1 1.5 0 0 3 -TESTTP53BP1,53BP1 1.5 0 0 4 -TESTYWHAE|14-3-3_epsilon|53BP1 1.5 0 0 5 -NA 1.5 0 0 7 -TESTARAF|A-Raf_pS299 -1.5 0 0 8 -TESTACACA|ACC1 abc 0 0 9 -TESTPRKAA1|AMPK_alpha NA 0 0 11 -TESTPRKAA1|AMPK_pT172 1.2 0 0 12 -TESTAKT1 AKT2 10000|AKT 1.5 0 0 13 -NA|K-Ras 1.5 0 0 7 -TESTPRKCA |PKC-alpha 1.5 0 0 7 -TESTTP53 |PKC-alpha 1.5 0 0 7 diff --git a/core/src/test/resources/table_test.txt b/core/src/test/resources/table_test.txt deleted file mode 100644 index 810741d0c47..00000000000 --- a/core/src/test/resources/table_test.txt +++ /dev/null @@ -1,98 +0,0 @@ - Sample1 . Sample2 . . -PatientId AKT1 AKT2 AKT3 BRCA1 BRCA2 -TCGA-02-0001 - - - - - -TCGA-02-0003 - - - - - -TCGA-02-0006 - - - - - -TCGA-02-0007 - - - - - -TCGA-02-0009 - - - - - -TCGA-02-0010 - - - - - -TCGA-02-0011 - - - - - -TCGA-02-0014 - - - - - -TCGA-02-0021 - - - - - -TCGA-02-0024 - - - - - -TCGA-02-0027 - - - - - -TCGA-02-0028 - - - - - -TCGA-02-0033 - - - - - -TCGA-02-0034 - - - - - -TCGA-02-0037 - - - - - -TCGA-02-0038 - - - - - -TCGA-02-0043 - - - - - -TCGA-02-0046 - - - - - -TCGA-02-0047 - - - - - -TCGA-02-0052 - - - - - -TCGA-02-0054 - - - - - -TCGA-02-0055 - - - - - -TCGA-02-0057 - - - - - -TCGA-02-0058 - - - - - -TCGA-02-0060 - - - - - -TCGA-02-0064 - - - - - -TCGA-02-0069 - - - - - -TCGA-02-0071 - - - - - -TCGA-02-0074 - - - - - -TCGA-02-0075 - - - - - -TCGA-02-0080 - - - - - -TCGA-02-0083 - - - - - -TCGA-02-0085 - - - - - -TCGA-02-0086 - - - - - -TCGA-02-0089 - - - - - -TCGA-02-0099 - - - - - -TCGA-02-0102 - - - - - -TCGA-02-0107 - - - - - -TCGA-02-0113 - - - - - -TCGA-02-0114 - - - - - -TCGA-02-0115 - - - - - -TCGA-02-0116 - - - - - -TCGA-06-0122 - - - - - -TCGA-06-0124 - - - - - -TCGA-06-0125 - - - - - -TCGA-06-0126 - - - - - -TCGA-06-0128 - - - - - -TCGA-06-0129 - - - - - -TCGA-06-0130 - - - - - -TCGA-06-0132 - - - - - -TCGA-06-0133 - - - - - -TCGA-06-0137 - - - - - -TCGA-06-0138 - - - - - -TCGA-06-0139 - - - - - -TCGA-06-0141 - - - - - -TCGA-06-0142 - - - - - -TCGA-06-0143 - - - - - -TCGA-06-0145 - - - - - -TCGA-06-0147 - - - - - -TCGA-06-0148 amplified - - - - -TCGA-06-0151 - - - - - -TCGA-06-0154 - - - - - -TCGA-06-0156 - - - - - -TCGA-06-0157 - - - - - -TCGA-06-0158 - - - - - -TCGA-06-0159 - - - - - -TCGA-06-0166 - - - - - -TCGA-06-0168 - - - - - -TCGA-06-0169 - - - - - -TCGA-06-0171 - - - - - -TCGA-06-0173 - - amplified - - -TCGA-06-0174 - - - - - -TCGA-06-0176 - - - - - -TCGA-06-0178 - - - - - -TCGA-06-0184 - - - - - -TCGA-06-0185 - - - - - -TCGA-06-0187 - - - - - -TCGA-06-0188 - - - - - -TCGA-06-0189 - - - - - -TCGA-06-0190 - - - - - -TCGA-06-0195 - - - - - -TCGA-06-0197 - - - - - -TCGA-06-0201 - - - - - -TCGA-06-0206 - - - - - -TCGA-06-0208 - - - - - -TCGA-06-0209 - - - - - -TCGA-06-0210 - - - - - -TCGA-06-0211 - - - - - -TCGA-06-0213 - - - - - -TCGA-06-0214 - - - - - -TCGA-06-0219 - - - - - -TCGA-06-0221 - - - - - -TCGA-06-0237 - - - - - -TCGA-06-0241 - - - - - -gene altered 1.06% 0% 1.06% 0% 0% -pathway altered 1.06% . 1.06% . . \ No newline at end of file diff --git a/core/src/test/resources/test-users.txt b/core/src/test/resources/test-users.txt deleted file mode 100644 index 65d71c78deb..00000000000 --- a/core/src/test/resources/test-users.txt +++ /dev/null @@ -1,13 +0,0 @@ -# -# List of users for testing. Each line is the following format: -# -# EMAIL_ADDRESS\tUSERNAME\tENABLED\tAUTHORITIES -# -# where AUTHORITIES is a semicolon separated list of authorities -# -# Current valid authorities: ROLE_USER, ROLE_MANAGER -# -jami@gmail.com Jami Bax true ROLE_USER -Lonnie@openid.org Lonnie Penaloza false ROLE_USER -Dhorak@yahoo.com Darryl Horak true ROLE_MANAGER;ROLE_USER - diff --git a/core/src/test/resources/test.BRCA.sig_genes.txt b/core/src/test/resources/test.BRCA.sig_genes.txt deleted file mode 100644 index c12a76cc11e..00000000000 --- a/core/src/test/resources/test.BRCA.sig_genes.txt +++ /dev/null @@ -1,17273 +0,0 @@ -rank gene description N n npat nsite nsil n1 n2 n3 n4 n5 n6 p q -1 PIK3CA phosphoinositide-3-kinase, catalytic, alpha polypeptide 1666509 168 158 29 3 54 17 88 1 8 0 <1.00e-15 <8.64e-12 -2 TP53 tumor protein p53 664677 142 139 94 3 15 33 18 7 69 0 <1.00e-15 <8.64e-12 -3 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2095431 53 36 52 1 1 1 1 0 22 28 1.45e-14 5.25e-11 -4 MLL3 myeloid/lymphoid or mixed-lineage leukemia 3 7507149 30 29 30 2 4 1 3 0 20 2 1.45e-14 5.25e-11 -5 GATA3 GATA binding protein 3 562770 55 53 32 1 1 1 0 0 51 2 1.52e-14 5.25e-11 -6 CDH1 cadherin 1, type 1, E-cadherin (epithelial) 1288794 31 31 29 0 0 4 0 0 27 0 1.89e-14 5.43e-11 -7 MAP2K4 mitogen-activated protein kinase kinase 4 570375 18 18 17 0 4 0 2 0 12 0 5.94e-14 1.13e-10 -8 TBX3 T-box 3 (ulnar mammary syndrome) 601302 11 11 11 0 0 0 1 0 10 0 6.42e-14 1.13e-10 -9 RUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) 373659 14 14 13 1 0 0 3 0 11 0 6.91e-14 1.13e-10 -10 PTEN phosphatase and tensin homolog (mutated in multiple advanced cancers 1) 632736 15 14 15 0 0 0 3 0 10 2 6.99e-14 1.13e-10 -11 PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 1199055 14 14 13 1 1 2 1 1 9 0 7.23e-14 1.13e-10 -12 AKT1 v-akt murine thymoma viral oncogene homolog 1 732108 12 12 2 1 0 11 1 0 0 0 7.93e-12 1.14e-08 -13 CTCF CCCTC-binding factor (zinc finger protein) 1127568 11 11 10 2 1 1 3 0 6 0 8.11e-11 1.08e-07 -14 NCOR1 nuclear receptor co-repressor 1 3741153 16 15 16 0 0 0 2 0 12 2 8.20e-10 1.01e-06 -15 RPGR retinitis pigmentosa GTPase regulator 1546350 10 10 10 0 1 3 0 0 6 0 8.59e-08 0.000099 -16 RB1 retinoblastoma 1 (including osteosarcoma) 1396278 9 9 9 0 0 0 1 0 8 0 2.57e-07 0.00028 -17 CBFB core-binding factor, beta subunit 226122 5 5 5 1 2 0 1 0 2 0 3.67e-07 0.00037 -18 ZFP36L1 zinc finger protein 36, C3H type-like 1 519675 6 6 6 0 0 0 2 0 4 0 4.04e-07 0.00039 -19 CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 276315 5 5 4 0 0 0 0 0 5 0 4.33e-07 0.00039 -20 FOXA1 forkhead box A1 490269 7 7 6 0 1 3 2 0 1 0 4.72e-07 0.00041 -21 PRRX1 paired related homeobox 1 287976 5 5 5 0 1 2 1 0 1 0 4.09e-06 0.0034 -22 MUC4 mucin 4, cell surface associated 2554266 16 13 16 9 5 5 3 3 0 0 4.78e-06 0.0038 -23 AFF2 AF4/FMR2 family, member 2 2015325 11 11 11 1 1 5 1 1 3 0 7.93e-06 0.0060 -24 DSPP dentin sialophosphoprotein 852774 7 6 7 0 3 1 0 0 3 0 9.29e-06 0.0067 -25 ATN1 atrophin 1 1634568 8 8 6 0 0 4 0 0 4 0 0.000011 0.0077 -26 MYB v-myb myeloblastosis viral oncogene homolog (avian) 1177761 7 7 7 0 0 2 0 1 4 0 0.000014 0.0096 -27 GPS2 G protein pathway suppressor 2 469482 5 5 5 1 0 0 0 0 5 0 0.000022 0.014 -28 DALRD3 DALR anticodon binding domain containing 3 596739 6 6 6 0 0 2 1 0 3 0 0.000022 0.014 -29 SF3B1 splicing factor 3b, subunit 1, 155kDa 2047773 10 10 6 0 0 2 7 0 1 0 0.000032 0.017 -30 NKAIN4 Na+/K+ transporting ATPase interacting 4 104949 3 3 3 1 0 1 1 1 0 0 0.000032 0.017 -31 PIWIL1 piwi-like 1 (Drosophila) 1351662 8 8 8 1 2 3 2 0 1 0 0.000032 0.017 -32 FAM166A 236769 4 4 4 0 0 1 0 0 3 0 0.000032 0.017 -33 SAAL1 serum amyloid A-like 1 676338 5 5 5 0 0 1 0 0 4 0 0.000039 0.020 -34 TMEM82 transmembrane protein 82 161733 4 4 4 0 1 1 1 0 1 0 0.000043 0.022 -35 HIST1H2BC histone cluster 1, H2bc 195195 4 4 4 1 0 2 1 0 1 0 0.000049 0.023 -36 TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 747318 6 5 5 0 0 0 0 0 4 2 0.000049 0.023 -37 WNT7A wingless-type MMTV integration site family, member 7A 502437 5 5 5 2 1 2 0 0 2 0 0.000050 0.023 -38 BID BH3 interacting domain death agonist 208884 4 4 4 0 0 2 0 0 2 0 0.000055 0.025 -39 LRFN4 leucine rich repeat and fibronectin type III domain containing 4 264654 4 4 2 0 0 1 3 0 0 0 0.000059 0.026 -40 TLE6 transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila) 624624 6 6 6 0 0 2 2 0 2 0 0.000060 0.026 -41 HIST1H1C histone cluster 1, H1c 327522 4 4 4 0 1 0 1 0 2 0 0.000063 0.026 -42 FER1L5 fer-1-like 5 (C. elegans) 1100697 7 7 7 0 0 3 1 1 2 0 0.000064 0.026 -43 GPR32 G protein-coupled receptor 32 545025 5 5 3 1 1 1 0 3 0 0 0.000085 0.034 -44 HCFC1R1 host cell factor C1 regulator 1 (XPO1 dependent) 74022 2 2 2 0 1 0 0 0 1 0 0.00010 0.040 -45 MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 2120781 7 7 7 0 0 1 1 0 5 0 0.00010 0.040 -46 ITPKB inositol 1,4,5-trisphosphate 3-kinase B 1234038 7 7 7 0 1 1 0 3 2 0 0.00011 0.043 -47 COL18A1 collagen, type XVIII, alpha 1 724503 6 6 6 1 1 2 0 0 3 0 0.00012 0.045 -48 CCR2 chemokine (C-C motif) receptor 2 361491 4 4 4 1 0 3 0 0 1 0 0.00013 0.046 -49 HAUS5 840606 6 6 6 0 1 2 2 0 1 0 0.00014 0.049 -50 MUC5B mucin 5B, oligomeric mucus/gel-forming 3671187 12 12 12 6 1 4 2 0 5 0 0.00015 0.051 -51 LLGL2 lethal giant larvae homolog 2 (Drosophila) 736164 5 5 4 0 0 2 1 1 1 0 0.00017 0.059 -52 PYCRL pyrroline-5-carboxylate reductase-like 158184 3 3 2 0 0 1 2 0 0 0 0.00018 0.060 -53 KLRG2 killer cell lectin-like receptor subfamily G, member 2 191139 3 3 1 0 0 0 3 0 0 0 0.00020 0.062 -54 PQLC2 PQ loop repeat containing 2 341211 4 4 3 0 2 1 0 0 1 0 0.00020 0.062 -55 GPRIN2 G protein regulated inducer of neurite outgrowth 2 631215 4 4 2 0 0 0 1 3 0 0 0.00020 0.062 -56 CIRBP cold inducible RNA binding protein 129792 3 3 3 0 1 2 0 0 0 0 0.00020 0.062 -57 GLI4 GLI-Kruppel family member GLI4 170859 3 3 3 0 2 0 1 0 0 0 0.00021 0.064 -58 HLA-A major histocompatibility complex, class I, A 432978 4 4 3 2 0 2 0 0 2 0 0.00022 0.064 -59 UBC ubiquitin C 1029717 6 6 6 0 1 0 3 0 2 0 0.00023 0.066 -60 MYT1L myelin transcription factor 1-like 1490580 8 8 8 0 0 2 3 1 2 0 0.00024 0.070 -61 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 660621 5 5 5 0 1 0 2 0 2 0 0.00025 0.071 -62 PPEF1 protein phosphatase, EF-hand calcium binding domain 1 1027182 6 6 6 1 0 2 0 2 2 0 0.00026 0.071 -63 NF1 neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) 4431687 13 12 13 0 0 1 2 3 5 2 0.00028 0.075 -64 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2 420303 4 4 4 1 1 2 1 0 0 0 0.00028 0.075 -65 LYSMD3 LysM, putative peptidoglycan-binding, domain containing 3 471003 4 4 4 0 0 0 0 2 2 0 0.00028 0.075 -66 ARID1A AT rich interactive domain 1A (SWI-like) 2939079 8 8 8 0 0 1 1 0 6 0 0.00030 0.078 -67 SCGB1C1 secretoglobin, family 1C, member 1 38532 2 2 1 0 0 2 0 0 0 0 0.00033 0.086 -68 ATP10B ATPase, class V, type 10B 2268318 10 10 10 1 2 3 4 0 1 0 0.00036 0.092 -69 GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 2252601 9 9 9 0 3 0 3 0 3 0 0.00037 0.093 -70 MED23 mediator complex subunit 23 2155764 8 8 8 0 1 1 1 0 5 0 0.00038 0.094 -71 KRTAP19-6 keratin associated protein 19-6 91260 2 2 2 0 0 1 1 0 0 0 0.00044 0.11 -72 KIAA1644 312312 3 3 3 0 0 2 0 0 1 0 0.00045 0.11 -73 FMN2 formin 2 1488552 7 7 7 1 1 3 0 2 1 0 0.00046 0.11 -74 FLG filaggrin 6182358 17 16 17 4 3 8 5 0 1 0 0.00047 0.11 -75 PRND prion protein 2 (dublet) 271245 3 3 3 0 0 3 0 0 0 0 0.00047 0.11 -76 SPTA1 spectrin, alpha, erythrocytic 1 (elliptocytosis 2) 3786276 13 12 13 2 1 10 0 0 0 2 0.00050 0.11 -77 CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 294567 3 3 3 1 0 2 0 0 1 0 0.00053 0.12 -78 GIPC3 GIPC PDZ domain containing family, member 3 131313 2 2 2 0 0 0 0 0 2 0 0.00054 0.12 -79 RGS7 regulator of G-protein signaling 7 776724 5 5 5 1 1 1 1 0 2 0 0.00059 0.13 -80 CCDC146 coiled-coil domain containing 146 1490580 5 5 2 0 0 0 1 0 4 0 0.00061 0.13 -81 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase, type I, gamma 298116 3 3 3 1 0 1 1 1 0 0 0.00063 0.13 -82 PCDHA8 protocadherin alpha 8 1065714 6 6 5 1 0 2 2 1 1 0 0.00063 0.13 -83 OPRM1 opioid receptor, mu 1 770133 5 5 5 2 0 2 1 1 1 0 0.00064 0.13 -84 OBSCN obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF 6919029 19 17 19 4 3 9 3 0 4 0 0.00069 0.14 -85 CCT6B chaperonin containing TCP1, subunit 6B (zeta 2) 807144 5 5 5 0 1 1 2 0 1 0 0.00070 0.14 -86 TPO thyroid peroxidase 1085487 6 6 6 0 2 2 1 0 1 0 0.00070 0.14 -87 CCND3 cyclin D3 339183 5 3 5 0 1 0 0 1 0 3 0.00071 0.14 -88 SELL selectin L (lymphocyte adhesion molecule 1) 588627 4 4 4 0 1 0 1 1 1 0 0.00076 0.15 -89 SARM1 sterile alpha and TIR motif containing 1 340197 4 3 4 0 0 0 0 0 2 2 0.00080 0.15 -90 CCDC88B coiled-coil domain containing 88B 932373 5 5 5 0 0 1 3 1 0 0 0.00080 0.15 -91 SPEN spen homolog, transcriptional regulator (Drosophila) 5535933 15 13 14 6 1 2 1 1 10 0 0.00081 0.15 -92 ZP4 zona pellucida glycoprotein 4 847197 5 5 5 1 0 3 1 0 1 0 0.00083 0.16 -93 EPS8L1 EPS8-like 1 429429 4 4 4 0 1 0 0 2 1 0 0.00084 0.16 -94 C19orf39 chromosome 19 open reading frame 39 353886 3 3 3 0 1 0 1 0 1 0 0.00086 0.16 -95 CCDC159 361491 3 3 3 0 0 1 0 0 2 0 0.00088 0.16 -96 PHLDA1 pleckstrin homology-like domain, family A, member 1 228657 3 3 3 0 1 0 2 0 0 0 0.00090 0.16 -97 H2BFWT H2B histone family, member W, testis-specific 264654 3 3 3 0 0 1 0 0 2 0 0.00091 0.16 -98 MEFV Mediterranean fever 996762 7 6 6 2 4 1 1 0 1 0 0.00096 0.17 -99 NEK5 NIMA (never in mitosis gene a)-related kinase 5 1078896 6 6 6 0 3 0 1 1 1 0 0.00096 0.17 -100 LIF leukemia inhibitory factor (cholinergic differentiation factor) 303186 3 3 3 0 0 1 0 1 1 0 0.0011 0.18 -101 KCNT2 potassium channel, subfamily T, member 2 1784640 8 8 8 0 3 0 0 1 4 0 0.0011 0.18 -102 PRAME preferentially expressed antigen in melanoma 771147 5 5 4 0 0 1 0 3 1 0 0.0011 0.19 -103 C1orf65 chromosome 1 open reading frame 65 507507 4 4 2 0 0 3 1 0 0 0 0.0011 0.19 -104 LPO lactoperoxidase 1040871 5 5 5 0 0 1 2 0 2 0 0.0011 0.19 -105 CXorf65 292032 3 3 3 0 1 1 0 1 0 0 0.0012 0.20 -106 CPXM1 carboxypeptidase X (M14 family), member 1 1044927 6 6 6 1 0 3 2 1 0 0 0.0012 0.20 -107 PCDH19 protocadherin 19 1620879 7 7 7 0 1 1 4 0 1 0 0.0013 0.21 -108 ATHL1 ATH1, acid trehalase-like 1 (yeast) 572910 4 4 4 1 0 3 1 0 0 0 0.0014 0.22 -109 WSCD2 WSC domain containing 2 874068 6 5 6 0 2 3 0 0 1 0 0.0014 0.23 -110 HIST1H3B histone cluster 1, H3b 210405 3 3 3 0 0 1 0 1 1 0 0.0015 0.23 -111 ROBLD3 163254 2 2 2 0 0 0 1 0 1 0 0.0015 0.23 -112 PRKD2 protein kinase D2 1108302 5 5 5 0 1 2 1 1 0 0 0.0015 0.23 -113 CDH9 cadherin 9, type 2 (T1-cadherin) 1223898 6 6 6 0 2 2 1 1 0 0 0.0015 0.23 -114 OSCP1 679380 4 4 4 0 0 0 2 1 1 0 0.0016 0.24 -115 KLRC1 killer cell lectin-like receptor subfamily C, member 1 368082 3 3 3 0 0 0 1 0 2 0 0.0016 0.24 -116 FAM58A family with sequence similarity 58, member A 330057 3 3 3 0 0 1 0 0 2 0 0.0016 0.24 -117 KCNB2 potassium voltage-gated channel, Shab-related subfamily, member 2 1391208 7 6 6 2 3 1 0 0 1 2 0.0017 0.25 -118 MUC17 mucin 17, cell surface associated 6861738 19 18 18 3 4 7 3 1 4 0 0.0017 0.25 -119 FOXP3 forkhead box P3 460356 3 3 3 1 0 1 0 0 2 0 0.0018 0.26 -120 CBLB Cas-Br-M (murine) ecotropic retroviral transforming sequence b 1531647 7 7 7 1 2 1 4 0 0 0 0.0018 0.26 -121 INSIG2 insulin induced gene 2 353886 3 3 3 0 2 0 1 0 0 0 0.0019 0.26 -122 C12orf36 chromosome 12 open reading frame 36 215475 3 3 3 0 0 1 2 0 0 0 0.0019 0.27 -123 HMGN5 308763 3 3 3 0 1 0 1 0 1 0 0.0019 0.27 -124 NHSL2 NHS-like 2 1129596 6 6 6 2 1 4 0 0 1 0 0.0020 0.28 -125 C4orf40 chromosome 4 open reading frame 40 342732 3 3 3 0 1 0 1 0 1 0 0.0020 0.28 -126 HOXA5 homeobox A5 334113 3 3 3 0 0 2 1 0 0 0 0.0021 0.28 -127 OR8H2 olfactory receptor, family 8, subfamily H, member 2 478101 4 4 4 1 3 0 1 0 0 0 0.0021 0.28 -128 KCNA1 potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) 756444 5 5 5 1 4 1 0 0 0 0 0.0021 0.29 -129 BAI1 brain-specific angiogenesis inhibitor 1 811707 6 5 6 0 2 2 0 0 0 2 0.0022 0.29 -130 CROCC ciliary rootlet coiled-coil, rootletin 1421121 7 6 7 3 2 3 0 1 1 0 0.0022 0.29 -131 KCNN2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 649974 4 4 4 0 1 0 2 0 1 0 0.0022 0.29 -132 LETM1 leucine zipper-EF-hand containing transmembrane protein 1 1054560 5 5 5 0 1 2 0 0 2 0 0.0023 0.30 -133 USH2A Usher syndrome 2A (autosomal recessive, mild) 8064849 20 20 20 4 6 3 10 1 0 0 0.0023 0.30 -134 SAPS1 SAPS domain family, member 1 738192 4 4 4 3 0 2 0 1 1 0 0.0023 0.30 -135 RARB retinoic acid receptor, beta 699153 4 4 4 3 1 1 1 0 1 0 0.0024 0.30 -136 HRNR hornerin 3232632 9 9 9 2 0 3 3 0 3 0 0.0024 0.30 -137 KRT17 keratin 17 598767 4 4 4 0 0 3 0 0 1 0 0.0024 0.30 -138 SLC7A6OS solute carrier family 7, member 6 opposite strand 262626 3 3 3 0 1 1 1 0 0 0 0.0025 0.31 -139 DMKN dermokine 728559 4 4 4 0 0 2 0 0 2 0 0.0025 0.31 -140 HIST1H3C histone cluster 1, H3c 210405 3 2 3 0 0 0 0 1 0 2 0.0025 0.31 -141 KIAA1984 KIAA1984 421317 4 3 4 0 0 1 2 0 1 0 0.0025 0.31 -142 CD5L CD5 molecule-like 541476 3 3 3 0 0 0 1 1 1 0 0.0025 0.31 -143 C9orf125 chromosome 9 open reading frame 125 616512 4 4 4 0 2 1 1 0 0 0 0.0025 0.31 -144 BSX brain-specific homeobox 222573 2 2 2 0 0 1 0 0 1 0 0.0026 0.31 -145 MSX2 msh homeobox 2 226122 2 2 2 0 0 1 0 0 1 0 0.0026 0.31 -146 NPR3 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) 741234 4 4 4 0 0 1 1 1 1 0 0.0026 0.31 -147 CST2 cystatin SA 222066 2 2 1 0 0 0 0 0 2 0 0.0027 0.32 -148 KBTBD10 kelch repeat and BTB (POZ) domain containing 10 935415 5 5 5 0 0 2 2 1 0 0 0.0027 0.32 -149 FAM169A 1044927 4 4 4 0 1 0 0 0 3 0 0.0028 0.32 -150 KCNT1 potassium channel, subfamily T, member 1 970398 5 5 5 1 1 3 0 0 1 0 0.0028 0.32 -151 OSBPL8 oxysterol binding protein-like 8 1400334 5 5 5 0 2 2 0 0 1 0 0.0028 0.32 -152 CSH2 chorionic somatomammotropin hormone 2 320931 3 3 2 0 1 1 1 0 0 0 0.0029 0.32 -153 ERBB3 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 2122302 8 8 8 0 0 1 2 4 1 0 0.0029 0.32 -154 TLR4 toll-like receptor 4 1283724 7 6 6 0 1 2 2 0 2 0 0.0029 0.32 -155 ARID3B AT rich interactive domain 3B (BRIGHT-like) 869505 4 4 4 0 2 0 0 0 2 0 0.0029 0.32 -156 TSC22D1 TSC22 domain family, member 1 1586910 6 6 6 1 1 2 1 0 2 0 0.0029 0.32 -157 ASB16 ankyrin repeat and SOCS box-containing 16 429429 3 3 3 1 1 1 1 0 0 0 0.0029 0.32 -158 CEACAM18 carcinoembryonic antigen-related cell adhesion molecule 18 576966 4 4 4 1 2 0 1 0 1 0 0.0030 0.32 -159 OR12D3 olfactory receptor, family 12, subfamily D, member 3 484185 4 4 3 1 3 0 0 1 0 0 0.0030 0.33 -160 HLA-C major histocompatibility complex, class I, C 478608 3 3 3 0 1 1 1 0 0 0 0.0030 0.33 -161 SLC13A1 solute carrier family 13 (sodium/sulfate symporters), member 1 936936 5 5 5 0 0 4 0 0 1 0 0.0030 0.33 -162 LHFPL4 lipoma HMGIC fusion partner-like 4 244881 2 2 2 1 0 0 0 1 1 0 0.0031 0.33 -163 SOX14 SRY (sex determining region Y)-box 14 345774 3 3 3 0 2 0 0 0 1 0 0.0031 0.33 -164 GPR78 G protein-coupled receptor 78 182013 2 2 2 0 1 1 0 0 0 0 0.0031 0.33 -165 C1orf212 chromosome 1 open reading frame 212 43602 1 1 1 0 0 0 0 0 1 0 0.0033 0.34 -166 CUL4B cullin 4B 1384617 6 6 6 0 2 2 1 0 1 0 0.0033 0.34 -167 PRDM8 PR domain containing 8 381771 3 3 3 0 0 1 1 0 1 0 0.0033 0.34 -168 DHRS9 dehydrogenase/reductase (SDR family) member 9 494832 2 2 2 0 0 0 0 0 2 0 0.0033 0.34 -169 ACVR1B activin A receptor, type IB 739713 4 4 4 1 2 0 1 0 1 0 0.0033 0.34 -170 TBC1D10C TBC1 domain family, member 10C 248430 2 2 2 1 0 1 0 0 1 0 0.0033 0.34 -171 KIF26B kinesin family member 26B 1763346 6 6 6 0 2 3 0 0 1 0 0.0033 0.34 -172 GIMAP7 GTPase, IMAP family member 7 459849 3 3 3 0 0 1 1 0 1 0 0.0035 0.35 -173 KIR3DL2 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 574938 4 4 4 0 0 3 0 1 0 0 0.0035 0.35 -174 HIST1H2AI histone cluster 1, H2ai 201279 2 2 2 0 0 0 0 1 1 0 0.0035 0.35 -175 CCDC34 coiled-coil domain containing 34 547560 3 3 3 0 0 1 0 0 2 0 0.0036 0.35 -176 KL klotho 1311609 6 6 6 0 1 1 3 1 0 0 0.0036 0.36 -177 PREX2 2567448 9 9 9 1 1 4 4 0 0 0 0.0037 0.36 -178 BCMO1 beta-carotene 15,15'-monooxygenase 1 855816 3 3 3 0 1 0 0 0 2 0 0.0038 0.37 -179 SEMA4F sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F 1125540 5 5 5 0 1 2 0 1 1 0 0.0038 0.37 -180 EGR3 early growth response 3 539955 3 3 3 1 0 0 0 0 3 0 0.0039 0.37 -181 DNAJC9 DnaJ (Hsp40) homolog, subfamily C, member 9 313833 3 3 3 0 0 0 2 1 0 0 0.0039 0.37 -182 TAS2R31 taste receptor, type 2, member 31 473538 3 3 3 0 0 0 3 0 0 0 0.0040 0.38 -183 RPS6KB2 ribosomal protein S6 kinase, 70kDa, polypeptide 2 572910 3 3 3 0 1 0 1 0 1 0 0.0040 0.38 -184 IL28B interleukin 28B (interferon, lambda 3) 309777 3 3 3 0 3 0 0 0 0 0 0.0041 0.39 -185 PCDHB7 protocadherin beta 7 1208688 5 5 5 1 0 4 1 0 0 0 0.0042 0.39 -186 ARHGEF1 Rho guanine nucleotide exchange factor (GEF) 1 1206660 5 5 5 0 2 2 0 0 1 0 0.0042 0.39 -187 KIFC1 kinesin family member C1 1039350 5 5 5 0 1 2 0 2 0 0 0.0042 0.39 -188 PDE3A phosphodiesterase 3A, cGMP-inhibited 1475370 6 6 6 3 2 3 0 1 0 0 0.0043 0.40 -189 ALDH8A1 aldehyde dehydrogenase 8 family, member A1 756444 4 4 4 0 0 3 0 0 1 0 0.0044 0.40 -190 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 1118442 5 5 5 1 1 1 1 1 1 0 0.0044 0.40 -191 C13orf35 chromosome 13 open reading frame 35 189618 2 2 2 0 1 0 0 1 0 0 0.0044 0.40 -192 FADS2 fatty acid desaturase 2 666198 4 4 4 1 0 2 2 0 0 0 0.0047 0.42 -193 SCN7A sodium channel, voltage-gated, type VII, alpha 2357550 8 8 8 0 1 4 2 1 0 0 0.0047 0.42 -194 TMEM223 150072 2 2 2 0 0 0 0 1 1 0 0.0047 0.42 -195 SRPR signal recognition particle receptor ('docking protein') 938964 7 5 7 0 1 2 2 1 1 0 0.0047 0.42 -196 SIRPB1 signal-regulatory protein beta 1 609414 4 4 4 0 1 2 1 0 0 0 0.0048 0.42 -197 SLC30A10 solute carrier family 30, member 10 477087 3 3 3 0 0 2 1 0 0 0 0.0048 0.42 -198 HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 2210013 8 8 8 4 4 2 1 0 1 0 0.0048 0.42 -199 C1orf144 chromosome 1 open reading frame 144 185562 2 2 2 0 0 1 0 1 0 0 0.0049 0.42 -200 MAEL maelstrom homolog (Drosophila) 617019 4 4 4 1 2 0 2 0 0 0 0.0050 0.42 -201 MST1 macrophage stimulating 1 (hepatocyte growth factor-like) 579501 3 3 3 0 0 1 0 1 1 0 0.0050 0.42 -202 EIF3I eukaryotic translation initiation factor 3, subunit I 518154 3 3 3 0 0 2 0 0 1 0 0.0050 0.42 -203 VCX variable charge, X-linked 151086 2 2 2 2 0 0 1 1 0 0 0.0050 0.42 -204 PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) 1283217 7 6 7 0 0 2 2 3 0 0 0.0050 0.42 -205 C12orf57 chromosome 12 open reading frame 57 198237 3 2 3 0 1 0 0 0 0 2 0.0050 0.42 -206 UNC5D unc-5 homolog D (C. elegans) 1420614 6 6 6 3 3 3 0 0 0 0 0.0051 0.42 -207 ELL elongation factor RNA polymerase II 292539 3 3 3 0 0 1 2 0 0 0 0.0051 0.42 -208 FAM96B family with sequence similarity 96, member B 118638 2 2 2 0 1 0 1 0 0 0 0.0051 0.42 -209 ROR1 receptor tyrosine kinase-like orphan receptor 1 1400841 6 6 6 0 2 2 1 0 1 0 0.0051 0.42 -210 GRIA1 glutamate receptor, ionotropic, AMPA 1 1411995 6 6 6 0 1 2 1 1 1 0 0.0052 0.42 -211 C17orf95 241332 2 2 2 0 0 0 0 1 1 0 0.0053 0.43 -212 NINL 1999608 7 7 7 0 3 1 2 1 0 0 0.0053 0.43 -213 MRPL23 mitochondrial ribosomal protein L23 196209 2 2 2 0 1 1 0 0 0 0 0.0054 0.43 -214 CXorf58 chromosome X open reading frame 58 522717 3 3 3 1 0 2 0 0 1 0 0.0054 0.43 -215 ONECUT2 one cut homeobox 2 293046 2 2 2 0 1 0 0 0 1 0 0.0054 0.43 -216 STAT4 signal transducer and activator of transcription 4 1185873 5 5 5 2 2 0 2 0 1 0 0.0055 0.44 -217 RIMS2 regulating synaptic membrane exocytosis 2 2110134 7 7 7 0 1 1 5 0 0 0 0.0055 0.44 -218 TCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) 1099176 4 4 4 0 0 1 1 1 1 0 0.0055 0.44 -219 RBM47 RNA binding motif protein 47 605865 3 3 3 1 1 0 0 0 2 0 0.0056 0.44 -220 BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 1288794 5 5 5 1 1 1 2 1 0 0 0.0056 0.44 -221 PLCL2 phospholipase C-like 2 1560039 7 6 7 0 0 1 3 0 1 2 0.0057 0.44 -222 PCDHGB6 protocadherin gamma subfamily B, 6 1222884 5 5 5 0 1 2 1 0 1 0 0.0057 0.44 -223 C17orf102 239304 2 2 2 0 0 1 1 0 0 0 0.0057 0.44 -224 DCLRE1C DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae) 1082445 5 5 5 0 0 0 3 2 0 0 0.0058 0.44 -225 ACER3 375687 3 3 3 0 2 0 1 0 0 0 0.0058 0.44 -226 GPR162 G protein-coupled receptor 162 811707 4 4 4 0 1 3 0 0 0 0 0.0058 0.44 -227 TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 592176 3 3 3 0 0 0 2 1 0 0 0.0059 0.45 -228 NPAS4 neuronal PAS domain protein 4 1237587 5 5 5 0 0 2 2 0 1 0 0.0059 0.45 -229 TMEM167A 119145 2 2 2 0 1 0 1 0 0 0 0.0059 0.45 -230 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 438555 3 3 3 0 0 0 1 0 2 0 0.0060 0.45 -231 SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) 300651 2 2 2 0 0 0 0 1 1 0 0.0060 0.45 -232 GCM2 glial cells missing homolog 2 (Drosophila) 781287 4 4 4 0 0 1 1 1 1 0 0.0061 0.45 -233 RTN4 reticulon 4 1568151 6 6 6 0 2 2 1 0 1 0 0.0062 0.45 -234 FAM167B 134355 2 2 2 0 0 2 0 0 0 0 0.0062 0.45 -235 FFAR3 free fatty acid receptor 3 507000 3 3 3 1 0 0 2 1 0 0 0.0062 0.45 -236 CNTLN centlein, centrosomal protein 2023437 7 7 7 1 2 0 4 0 1 0 0.0062 0.45 -237 APTX aprataxin 563784 3 3 3 0 0 1 2 0 0 0 0.0062 0.45 -238 CRHR1 corticotropin releasing hormone receptor 1 608400 3 3 3 0 0 0 2 0 1 0 0.0063 0.45 -239 HLF hepatic leukemia factor 451737 3 3 2 0 0 1 1 1 0 0 0.0063 0.45 -240 ZNF626 zinc finger protein 626 831987 4 4 4 0 1 0 1 0 2 0 0.0063 0.45 -241 STK11IP serine/threonine kinase 11 interacting protein 432471 3 3 3 0 0 3 0 0 0 0 0.0063 0.45 -242 SLC35B2 solute carrier family 35, member B2 659100 4 4 4 1 0 3 0 1 0 0 0.0064 0.45 -243 DYDC2 DPY30 domain containing 2 276822 2 2 2 0 0 0 0 0 2 0 0.0064 0.45 -244 C16orf62 chromosome 16 open reading frame 62 1518465 5 5 5 0 0 1 2 0 2 0 0.0064 0.45 -245 DOK5 docking protein 5 483171 3 3 3 0 1 1 0 0 1 0 0.0064 0.45 -246 PDZRN3 PDZ domain containing RING finger 3 1238601 5 5 5 1 1 4 0 0 0 0 0.0064 0.45 -247 FAM155A 618540 4 4 4 2 1 1 1 1 0 0 0.0065 0.45 -248 PTMS parathymosin 99879 2 1 2 0 0 0 0 0 0 2 0.0065 0.45 -249 ZNF268 zinc finger protein 268 593190 3 3 2 0 0 0 0 0 3 0 0.0066 0.46 -250 GYS1 glycogen synthase 1 (muscle) 1000311 5 5 5 0 1 3 1 0 0 0 0.0066 0.46 -251 ADCY9 adenylate cyclase 9 1604148 5 5 5 1 1 2 1 0 1 0 0.0066 0.46 -252 PLA2G4F phospholipase A2, group IVF 1212237 5 5 5 1 3 0 1 1 0 0 0.0067 0.46 -253 TMIGD2 transmembrane and immunoglobulin domain containing 2 368082 2 2 2 2 0 0 0 0 2 0 0.0068 0.46 -254 DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 918177 4 4 4 0 0 2 1 0 1 0 0.0068 0.46 -255 C5orf41 chromosome 5 open reading frame 41 945048 4 4 4 0 0 0 3 0 1 0 0.0069 0.46 -256 MYO7A myosin VIIA 1821144 7 7 7 1 3 2 1 1 0 0 0.0069 0.46 -257 NPY1R neuropeptide Y receptor Y1 589641 3 3 3 0 0 0 1 1 1 0 0.0069 0.46 -258 TCF7 transcription factor 7 (T-cell specific, HMG-box) 496353 3 3 3 0 0 3 0 0 0 0 0.0069 0.46 -259 ASXL3 additional sex combs like 3 (Drosophila) 3214380 10 10 10 1 4 4 1 0 1 0 0.0069 0.46 -260 PCDHA5 protocadherin alpha 5 1318200 5 5 5 0 1 4 0 0 0 0 0.0069 0.46 -261 C8orf31 chromosome 8 open reading frame 31 210405 2 2 2 0 0 0 1 0 1 0 0.0069 0.46 -262 LSR lipolysis stimulated lipoprotein receptor 654030 3 3 3 0 0 0 2 0 1 0 0.0070 0.46 -263 FAM171A1 1320228 6 5 6 1 1 0 2 0 3 0 0.0070 0.46 -264 IFNE 319917 2 2 2 1 0 0 1 0 1 0 0.0071 0.46 -265 SFRP1 secreted frizzled-related protein 1 265161 2 2 2 0 1 0 0 0 1 0 0.0071 0.46 -266 MORN1 MORN repeat containing 1 404586 3 3 3 0 0 3 0 0 0 0 0.0071 0.46 -267 NECAB1 N-terminal EF-hand calcium binding protein 1 371124 3 3 3 2 0 3 0 0 0 0 0.0071 0.46 -268 CBLC Cas-Br-M (murine) ecotropic retroviral transforming sequence c 584571 3 3 3 0 0 0 1 0 2 0 0.0071 0.46 -269 TRAPPC2 trafficking protein particle complex 2 201786 2 2 2 0 0 0 2 0 0 0 0.0072 0.46 -270 RGS4 regulator of G-protein signaling 4 440583 3 3 3 0 0 0 1 0 2 0 0.0072 0.46 -271 PCNXL2 pecanex-like 2 (Drosophila) 3041493 8 8 7 0 2 3 1 1 1 0 0.0072 0.46 -272 KLHL1 kelch-like 1 (Drosophila) 1150890 4 4 4 0 1 1 1 0 1 0 0.0072 0.46 -273 MAGEA10 melanoma antigen family A, 10 564798 3 3 3 0 1 0 0 0 2 0 0.0072 0.46 -274 XRCC6BP1 XRCC6 binding protein 1 335634 3 2 3 0 0 0 0 0 1 2 0.0073 0.46 -275 PAEP progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial alpha-2-globulin, alpha uterine protein) 178464 2 2 2 0 1 1 0 0 0 0 0.0073 0.46 -276 KCNJ12 potassium inwardly-rectifying channel, subfamily J, member 12 633750 3 3 3 1 1 0 2 0 0 0 0.0074 0.46 -277 PPIB peptidylprolyl isomerase B (cyclophilin B) 269724 2 2 2 0 1 0 0 0 1 0 0.0074 0.46 -278 UBE2V1 ubiquitin-conjugating enzyme E2 variant 1 268203 2 2 2 0 0 0 0 1 1 0 0.0074 0.46 -279 IGSF5 immunoglobulin superfamily, member 5 584064 3 3 3 0 0 1 0 0 2 0 0.0074 0.46 -280 TMEM155 transmembrane protein 155 171366 2 2 2 0 1 1 0 0 0 0 0.0075 0.46 -281 MLC1 megalencephalic leukoencephalopathy with subcortical cysts 1 316368 2 2 2 0 0 0 0 0 2 0 0.0076 0.47 -282 PRPF38B PRP38 pre-mRNA processing factor 38 (yeast) domain containing B 786357 4 4 4 0 1 0 1 1 1 0 0.0078 0.47 -283 KRTAP6-1 keratin associated protein 6-1 111540 2 2 2 0 2 0 0 0 0 0 0.0079 0.48 -284 FAT3 FAT tumor suppressor homolog 3 (Drosophila) 6798363 15 15 15 2 4 3 5 1 2 0 0.0079 0.48 -285 MPV17L MPV17 mitochondrial membrane protein-like 148551 2 2 2 0 1 0 1 0 0 0 0.0079 0.48 -286 ALPPL2 alkaline phosphatase, placental-like 2 456300 3 3 2 0 0 0 3 0 0 0 0.0079 0.48 -287 CYP3A7 cytochrome P450, family 3, subfamily A, polypeptide 7 792948 4 4 4 2 1 2 0 1 0 0 0.0080 0.48 -288 FNBP4 formin binding protein 4 1468272 5 5 5 0 0 2 2 0 1 0 0.0080 0.48 -289 ARL6IP6 ADP-ribosylation-like factor 6 interacting protein 6 251979 2 2 2 0 0 1 1 0 0 0 0.0081 0.48 -290 RXFP3 relaxin/insulin-like family peptide receptor 3 456807 3 3 3 0 2 1 0 0 0 0 0.0081 0.48 -291 MAGEL2 MAGE-like 2 788385 3 3 3 0 1 0 0 0 2 0 0.0081 0.48 -292 ARMCX2 armadillo repeat containing, X-linked 2 964821 4 4 4 1 1 0 2 0 1 0 0.0082 0.48 -293 ABCC8 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 2258685 7 7 7 0 2 4 0 1 0 0 0.0082 0.48 -294 C10orf72 chromosome 10 open reading frame 72 535392 3 3 3 2 0 0 1 1 1 0 0.0082 0.48 -295 C19orf45 chromosome 19 open reading frame 45 366561 2 2 2 0 0 1 0 0 1 0 0.0082 0.48 -296 ZNF438 zinc finger protein 438 1266993 5 5 5 0 0 1 1 0 3 0 0.0083 0.48 -297 LCE2B late cornified envelope 2B 170859 2 2 2 0 0 2 0 0 0 0 0.0083 0.48 -298 ATOH1 atonal homolog 1 (Drosophila) 405093 3 3 3 0 1 1 1 0 0 0 0.0083 0.48 -299 CHST9 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 640341 3 3 3 0 0 0 1 1 1 0 0.0084 0.48 -300 CYP4F11 cytochrome P450, family 4, subfamily F, polypeptide 11 822861 4 4 4 1 0 1 2 0 1 0 0.0084 0.48 -301 DULLARD dullard homolog (Xenopus laevis) 302172 2 2 1 1 0 0 2 0 0 0 0.0084 0.48 -302 KDM6A 2073123 5 5 5 0 0 0 0 2 3 0 0.0084 0.48 -303 OR4A15 olfactory receptor, family 4, subfamily A, member 15 526773 3 3 3 1 2 1 0 0 0 0 0.0084 0.48 -304 CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 614484 3 3 3 0 0 1 1 0 1 0 0.0086 0.48 -305 FLYWCH1 FLYWCH-type zinc finger 1 322452 2 2 2 0 1 0 1 0 0 0 0.0086 0.48 -306 ODZ4 odz, odd Oz/ten-m homolog 4 (Drosophila) 3028311 9 9 9 1 5 3 1 0 0 0 0.0086 0.48 -307 C12orf44 chromosome 12 open reading frame 44 337155 2 2 2 0 0 1 0 0 1 0 0.0086 0.48 -308 PAGE1 P antigen family, member 1 (prostate associated) 233727 2 2 2 1 0 0 2 0 0 0 0.0087 0.48 -309 NFE2L3 nuclear factor (erythroid-derived 2)-like 3 774189 3 3 3 1 0 1 0 0 2 0 0.0087 0.48 -310 NHLRC1 NHL repeat containing 1 419796 3 3 3 0 0 2 1 0 0 0 0.0088 0.49 -311 NOTCH4 Notch homolog 4 (Drosophila) 2935530 6 6 5 1 0 1 2 0 3 0 0.0088 0.49 -312 AP4M1 adaptor-related protein complex 4, mu 1 subunit 673803 3 3 3 0 0 0 0 2 1 0 0.0089 0.49 -313 DCAF17 754923 4 4 4 0 2 0 2 0 0 0 0.0089 0.49 -314 COMP cartilage oligomeric matrix protein 512070 3 3 3 2 1 2 0 0 0 0 0.0090 0.49 -315 C11orf85 346281 2 2 2 0 0 0 1 0 1 0 0.0090 0.49 -316 C3orf71 230178 2 2 2 0 1 0 0 1 0 0 0.0090 0.49 -317 CD97 CD97 molecule 1195506 5 5 5 0 1 1 2 0 1 0 0.0091 0.50 -318 TMEM89 transmembrane protein 89 246909 2 2 2 0 0 0 0 0 2 0 0.0092 0.50 -319 WFDC6 WAP four-disulfide core domain 6 138411 2 2 2 1 0 1 0 0 1 0 0.0092 0.50 -320 ATF5 activating transcription factor 5 275808 2 2 2 0 0 2 0 0 0 0 0.0093 0.50 -321 HIST1H3G histone cluster 1, H3g 210405 2 2 2 1 1 1 0 0 0 0 0.0094 0.50 -322 MREG melanoregulin 286962 2 2 1 0 0 0 2 0 0 0 0.0094 0.50 -323 EFHD2 EF-hand domain family, member D2 122694 1 1 1 0 0 0 0 0 1 0 0.0096 0.51 -324 SCFD1 sec1 family domain containing 1 995748 4 4 4 0 0 2 2 0 0 0 0.0096 0.51 -325 GPSM2 G-protein signaling modulator 2 (AGS3-like, C. elegans) 1070277 4 4 4 0 1 1 1 0 1 0 0.0096 0.51 -326 GPC5 glypican 5 803088 4 4 4 3 1 3 0 0 0 0 0.0096 0.51 -327 IL27RA interleukin 27 receptor, alpha 944541 4 4 4 1 0 1 1 2 0 0 0.0096 0.51 -328 GRIP2 glutamate receptor interacting protein 2 879138 4 4 4 1 1 2 0 1 0 0 0.0096 0.51 -329 FAM49B family with sequence similarity 49, member B 514605 3 3 3 0 0 0 3 0 0 0 0.0097 0.51 -330 EFCAB4A EF-hand calcium binding domain 4A 116610 1 1 1 0 0 0 0 0 1 0 0.0097 0.51 -331 ALOXE3 arachidonate lipoxygenase 3 1067742 4 4 4 1 0 1 1 0 2 0 0.0098 0.51 -332 USP12 ubiquitin specific peptidase 12 556179 3 3 3 0 1 1 0 0 1 0 0.0098 0.51 -333 SEMG1 semenogelin I 708279 3 3 3 0 0 1 1 0 1 0 0.0099 0.51 -334 C17orf97 429429 3 3 2 1 2 1 0 0 0 0 0.0100 0.51 -335 BRCA1 breast cancer 1, early onset 2915250 8 8 8 0 1 1 1 0 5 0 0.010 0.51 -336 C1orf194 chromosome 1 open reading frame 194 212433 2 2 2 0 0 1 1 0 0 0 0.010 0.51 -337 GNAS GNAS complex locus 1099176 4 4 4 0 0 2 1 0 1 0 0.010 0.51 -338 ZNF415 zinc finger protein 415 851760 4 4 4 1 1 1 1 0 1 0 0.010 0.51 -339 PLXDC1 plexin domain containing 1 710307 3 3 3 1 2 0 0 0 1 0 0.010 0.51 -340 OR4D10 olfactory receptor, family 4, subfamily D, member 10 476580 3 3 3 0 0 0 2 0 1 0 0.010 0.51 -341 HIF3A hypoxia inducible factor 3, alpha subunit 936429 4 4 4 2 1 1 1 1 0 0 0.010 0.51 -342 CPAMD8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 2319018 7 7 5 0 1 1 1 4 0 0 0.010 0.51 -343 C17orf81 chromosome 17 open reading frame 81 501930 3 3 3 0 0 0 2 1 0 0 0.010 0.51 -344 EPB41L4A erythrocyte membrane protein band 4.1 like 4A 1087008 4 4 4 0 1 1 0 0 2 0 0.010 0.51 -345 NR1H2 nuclear receptor subfamily 1, group H, member 2 584064 3 3 3 0 2 1 0 0 0 0 0.010 0.51 -346 SNAP23 synaptosomal-associated protein, 23kDa 336648 2 2 2 0 0 0 0 1 1 0 0.010 0.51 -347 SHD Src homology 2 domain containing transforming protein D 378222 3 3 3 0 1 2 0 0 0 0 0.010 0.51 -348 NPAS3 neuronal PAS domain protein 3 876603 4 4 4 0 0 2 0 0 2 0 0.010 0.51 -349 MAP3K10 mitogen-activated protein kinase kinase kinase 10 783822 4 4 4 0 1 2 1 0 0 0 0.010 0.51 -350 CAMKK1 calcium/calmodulin-dependent protein kinase kinase 1, alpha 682929 3 3 3 0 0 0 1 0 2 0 0.010 0.51 -351 ETNK1 ethanolamine kinase 1 538434 3 3 3 0 0 2 0 1 0 0 0.010 0.51 -352 SLCO5A1 solute carrier organic anion transporter family, member 5A1 1293357 5 4 5 0 1 1 0 1 0 2 0.010 0.51 -353 WBSCR17 Williams-Beuren syndrome chromosome region 17 810693 4 4 4 0 2 0 1 0 1 0 0.010 0.51 -354 SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 659100 3 3 3 0 0 2 0 0 1 0 0.010 0.51 -355 KIAA1045 KIAA1045 624117 3 3 3 1 0 2 0 0 1 0 0.010 0.51 -356 UBQLN4 ubiquilin 4 741741 4 4 4 0 0 1 2 1 0 0 0.011 0.51 -357 TMCC1 transmembrane and coiled-coil domain family 1 1002846 4 4 4 0 1 0 3 0 0 0 0.011 0.51 -358 GHRL ghrelin/obestatin preprohormone 135369 2 2 2 0 2 0 0 0 0 0 0.011 0.51 -359 EIF1AX eukaryotic translation initiation factor 1A, X-linked 224601 2 2 2 0 0 0 1 0 1 0 0.011 0.51 -360 C9orf102 chromosome 9 open reading frame 102 1070784 4 4 2 1 2 0 0 2 0 0 0.011 0.51 -361 MADD MAP-kinase activating death domain 2577588 7 7 7 2 2 3 0 0 2 0 0.011 0.51 -362 C11orf40 chromosome 11 open reading frame 40 313326 2 2 2 0 0 0 2 0 0 0 0.011 0.51 -363 ZDHHC1 zinc finger, DHHC-type containing 1 213447 2 2 2 0 0 0 0 2 0 0 0.011 0.51 -364 PPM1L protein phosphatase 1 (formerly 2C)-like 557193 3 3 3 1 0 1 1 1 0 0 0.011 0.51 -365 IFI35 interferon-induced protein 35 401544 2 2 2 0 0 0 0 0 2 0 0.011 0.51 -366 ZFPL1 zinc finger protein-like 1 487227 3 3 3 1 1 1 1 0 0 0 0.011 0.51 -367 TMSB15A 74022 1 1 1 0 0 0 1 0 0 0 0.011 0.51 -368 UPB1 ureidopropionase, beta 583050 3 3 3 0 0 1 0 0 2 0 0.011 0.51 -369 MYRIP myosin VIIA and Rab interacting protein 1340508 5 5 5 0 1 1 2 1 0 0 0.011 0.51 -370 PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent) 1175226 6 5 5 0 2 1 2 1 0 0 0.011 0.51 -371 C8orf73 chromosome 8 open reading frame 73 341718 2 2 2 1 0 1 1 0 0 0 0.011 0.51 -372 RPL13A ribosomal protein L13a 252486 2 2 2 0 0 0 2 0 0 0 0.011 0.51 -373 TTC4 tetratricopeptide repeat domain 4 584571 3 3 3 1 0 0 1 2 0 0 0.011 0.51 -374 TRAF7 TNF receptor-associated factor 7 431457 3 3 3 0 1 1 0 0 1 0 0.011 0.51 -375 COL23A1 collagen, type XXIII, alpha 1 456300 3 3 3 0 0 1 1 0 1 0 0.011 0.51 -376 RPS5 ribosomal protein S5 265161 2 2 2 0 0 0 0 2 0 0 0.011 0.51 -377 C4orf50 344253 2 2 2 1 0 1 0 0 1 0 0.011 0.51 -378 HTR5A 5-hydroxytryptamine (serotonin) receptor 5A 545025 3 3 3 0 2 1 0 0 0 0 0.011 0.52 -379 CCDC102B coiled-coil domain containing 102B 795990 4 4 4 0 3 0 1 0 0 0 0.011 0.52 -380 FRMD4A FERM domain containing 4A 1158495 4 4 4 1 0 3 0 0 1 0 0.012 0.53 -381 STARD4 StAR-related lipid transfer (START) domain containing 4 323466 2 2 2 0 0 0 2 0 0 0 0.012 0.53 -382 HIST2H2BE histone cluster 2, H2be 195195 2 2 2 0 0 1 1 0 0 0 0.012 0.53 -383 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 771654 4 4 4 1 0 1 1 0 2 0 0.012 0.53 -384 SPRR2B small proline-rich protein 2B 113061 1 1 1 0 0 0 0 0 1 0 0.012 0.53 -385 NOL12 nucleolar protein 12 237783 2 2 2 0 1 0 0 1 0 0 0.012 0.53 -386 PROK2 prokineticin 2 121173 1 1 1 0 0 0 0 0 1 0 0.012 0.53 -387 TSNARE1 t-SNARE domain containing 1 644397 3 3 3 0 2 1 0 0 0 0 0.012 0.53 -388 OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 579501 3 3 3 0 2 0 0 1 0 0 0.012 0.53 -389 FBXO44 F-box protein 44 384813 2 2 2 0 0 1 0 0 1 0 0.012 0.53 -390 FKSG83 291018 2 2 2 0 0 2 0 0 0 0 0.012 0.53 -391 CADPS Ca2+-dependent secretion activator 1918995 6 6 6 0 0 2 2 1 1 0 0.012 0.53 -392 PGBD5 piggyBac transposable element derived 5 707772 3 3 3 0 1 0 0 1 1 0 0.012 0.53 -393 HS6ST2 heparan sulfate 6-O-sulfotransferase 2 707265 3 3 3 0 0 1 2 0 0 0 0.012 0.53 -394 LRRC10 leucine rich repeat containing 10 417768 2 2 2 0 0 0 0 0 2 0 0.012 0.53 -395 IL1R2 interleukin 1 receptor, type II 623103 3 3 3 1 0 1 0 0 2 0 0.012 0.53 -396 CYP2A13 cytochrome P450, family 2, subfamily A, polypeptide 13 770640 4 4 4 1 1 2 1 0 0 0 0.012 0.54 -397 MUC6 mucin 6, oligomeric mucus/gel-forming 1565616 4 4 4 0 0 1 0 0 3 0 0.012 0.54 -398 PLA2G3 phospholipase A2, group III 719940 3 3 2 0 0 0 1 2 0 0 0.012 0.54 -399 PAX5 paired box 5 520689 3 3 3 0 0 1 1 0 1 0 0.012 0.54 -400 NUMBL numb homolog (Drosophila)-like 393939 3 2 3 0 0 0 1 0 0 2 0.012 0.54 -401 PLEKHA9 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 9 598260 3 3 3 0 0 2 0 1 0 0 0.013 0.54 -402 CRCT1 cysteine-rich C-terminal 1 44109 1 1 1 0 0 0 0 0 1 0 0.013 0.54 -403 CD163L1 CD163 molecule-like 1 2250066 7 7 7 0 1 3 2 1 0 0 0.013 0.54 -404 FGF18 fibroblast growth factor 18 308256 2 2 2 1 0 2 0 0 0 0 0.013 0.54 -405 GTSE1 G-2 and S-phase expressed 1 1141764 4 4 4 0 0 2 0 1 1 0 0.013 0.54 -406 NUDT8 nudix (nucleoside diphosphate linked moiety X)-type motif 8 120159 1 1 1 0 0 0 0 0 1 0 0.013 0.54 -407 OR5I1 olfactory receptor, family 5, subfamily I, member 1 481143 3 3 3 0 1 1 1 0 0 0 0.013 0.54 -408 WAC WW domain containing adaptor with coiled-coil 978510 4 4 4 0 0 0 3 0 1 0 0.013 0.54 -409 TMEM150B 367575 2 2 1 0 0 0 2 0 0 0 0.013 0.54 -410 OR51A7 olfactory receptor, family 51, subfamily A, member 7 478101 3 3 3 0 0 1 1 1 0 0 0.013 0.54 -411 ZPLD1 zona pellucida-like domain containing 1 679380 3 3 3 0 1 0 1 0 1 0 0.013 0.54 -412 SETDB1 SET domain, bifurcated 1 2007720 7 7 6 0 2 3 1 1 0 0 0.013 0.54 -413 OPN4 opsin 4 637806 3 3 3 1 0 1 1 0 1 0 0.013 0.54 -414 CCDC135 coiled-coil domain containing 135 572910 3 3 3 0 1 1 1 0 0 0 0.013 0.54 -415 FAM114A2 795990 4 4 4 0 2 1 1 0 0 0 0.013 0.54 -416 PRKRIR protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) 1121991 4 4 4 0 1 2 0 0 1 0 0.013 0.54 -417 PCSK5 proprotein convertase subtilisin/kexin type 5 1432275 5 5 5 0 0 1 2 0 2 0 0.013 0.54 -418 C19orf40 chromosome 19 open reading frame 40 336648 2 2 2 0 0 0 0 0 2 0 0.013 0.54 -419 BRCA2 breast cancer 2, early onset 5253027 10 10 10 0 1 0 2 1 6 0 0.013 0.54 -420 PCDHA9 protocadherin alpha 9 816270 4 4 4 1 0 4 0 0 0 0 0.013 0.54 -421 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 975468 4 4 4 3 1 1 0 0 2 0 0.013 0.54 -422 VSIG8 V-set and immunoglobulin domain containing 8 401037 2 2 2 0 0 1 0 0 1 0 0.013 0.55 -423 FLII flightless I homolog (Drosophila) 1572714 5 5 5 1 1 1 1 1 1 0 0.013 0.55 -424 HLA-DRB1 major histocompatibility complex, class II, DR beta 1 380757 2 2 2 1 0 0 1 1 0 0 0.013 0.55 -425 TRIM6-TRIM34 TRIM6-TRIM34 1310595 6 4 6 1 1 0 1 0 1 3 0.013 0.55 -426 LCN10 lipocalin 10 282906 2 2 2 0 0 0 1 0 1 0 0.014 0.55 -427 RBM19 RNA binding motif protein 19 1510353 5 5 5 0 0 4 1 0 0 0 0.014 0.55 -428 OR10Q1 olfactory receptor, family 10, subfamily Q, member 1 488748 3 3 3 0 0 3 0 0 0 0 0.014 0.55 -429 PCP2 Purkinje cell protein 2 69966 1 1 1 0 0 0 0 0 1 0 0.014 0.55 -430 FUT2 fucosyltransferase 2 (secretor status included) 525252 2 2 1 0 0 0 0 0 2 0 0.014 0.55 -431 HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 531843 3 3 3 1 1 1 1 0 0 0 0.014 0.55 -432 TRIM11 tripartite motif-containing 11 462384 2 2 2 0 0 1 0 0 1 0 0.014 0.55 -433 CFHR4 complement factor H-related 4 517140 3 3 3 0 0 2 1 0 0 0 0.014 0.55 -434 PCOTH 186576 2 2 2 0 1 1 0 0 0 0 0.014 0.55 -435 RPS27L ribosomal protein S27-like 137397 1 1 1 0 0 0 0 0 1 0 0.014 0.55 -436 SLCO1B3 solute carrier organic anion transporter family, member 1B3 1097655 4 4 4 1 0 0 3 0 1 0 0.014 0.55 -437 CYP2S1 cytochrome P450, family 2, subfamily S, polypeptide 1 694590 3 3 3 2 0 2 0 0 1 0 0.014 0.55 -438 LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 150072 2 2 2 0 1 1 0 0 0 0 0.014 0.56 -439 CA9 carbonic anhydrase IX 721461 3 3 3 0 0 2 1 0 0 0 0.014 0.56 -440 ZFP28 zinc finger protein 28 homolog (mouse) 1224405 4 4 2 1 0 0 3 0 1 0 0.014 0.56 -441 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 780780 2 2 2 1 0 0 0 0 2 0 0.014 0.56 -442 DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 1226940 5 5 5 1 0 1 2 2 0 0 0.014 0.56 -443 NDUFA3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa 137397 1 1 1 0 0 0 0 1 0 0 0.014 0.56 -444 PHF21B PHD finger protein 21B 393939 2 2 2 0 1 0 0 1 0 0 0.014 0.56 -445 LCN8 lipocalin 8 96330 1 1 1 1 1 0 0 0 0 0 0.015 0.56 -446 EML4 echinoderm microtubule associated protein like 4 1540266 4 4 4 0 1 0 0 0 3 0 0.015 0.56 -447 LRP2 low density lipoprotein-related protein 2 7199907 17 16 17 2 5 4 6 2 0 0 0.015 0.57 -448 MRPS30 mitochondrial ribosomal protein S30 372645 2 2 1 0 0 0 2 0 0 0 0.015 0.57 -449 DGKI diacylglycerol kinase, iota 1484496 5 5 5 0 3 1 0 0 1 0 0.015 0.57 -450 MAP1A microtubule-associated protein 1A 4270461 11 9 11 1 2 4 3 0 2 0 0.015 0.57 -451 PTH2 parathyroid hormone 2 114582 1 1 1 0 0 0 1 0 0 0 0.015 0.57 -452 XPNPEP3 X-prolyl aminopeptidase (aminopeptidase P) 3, putative 758472 3 3 3 0 0 0 1 1 1 0 0.015 0.57 -453 IL10RB interleukin 10 receptor, beta 483171 3 3 3 0 2 0 1 0 0 0 0.015 0.57 -454 MRFAP1 Mof4 family associated protein 1 190125 2 2 2 0 1 0 0 0 1 0 0.015 0.57 -455 AGAP7 800553 2 2 1 0 0 0 0 0 2 0 0.015 0.57 -456 RETNLB resistin like beta 176436 2 2 2 0 0 1 1 0 0 0 0.015 0.57 -457 TMEM132B transmembrane protein 132B 1659411 4 4 4 2 0 2 0 0 2 0 0.015 0.57 -458 C1orf122 chromosome 1 open reading frame 122 50700 1 1 1 0 0 1 0 0 0 0 0.015 0.57 -459 PCDHB6 protocadherin beta 6 1211223 4 4 4 1 1 1 1 0 1 0 0.015 0.57 -460 FOSL2 FOS-like antigen 2 420810 2 2 2 1 0 0 1 1 0 0 0.015 0.57 -461 PRUNE prune homolog (Drosophila) 706758 3 3 3 1 1 0 1 0 1 0 0.015 0.58 -462 OTOP2 otopetrin 2 707772 3 3 3 0 0 0 0 2 1 0 0.016 0.58 -463 APOB apolipoprotein B (including Ag(x) antigen) 6935253 14 14 14 3 3 3 4 1 3 0 0.016 0.58 -464 GLYR1 852267 3 3 3 0 0 1 0 0 2 0 0.016 0.58 -465 TRMT2A 273780 2 2 2 0 0 1 0 0 1 0 0.016 0.58 -466 MAP2 microtubule-associated protein 2 2942628 7 7 7 1 0 3 0 3 1 0 0.016 0.58 -467 DNALI1 dynein, axonemal, light intermediate chain 1 439569 2 2 2 0 0 0 1 0 1 0 0.016 0.58 -468 MAGIX MAGI family member, X-linked 323466 2 2 2 2 0 1 0 0 1 0 0.016 0.58 -469 DTX1 deltex homolog 1 (Drosophila) 632736 3 3 3 2 0 2 0 1 0 0 0.016 0.58 -470 RPL5 ribosomal protein L5 465933 2 2 2 0 0 0 1 0 1 0 0.016 0.58 -471 C16orf71 chromosome 16 open reading frame 71 709800 3 3 3 0 1 0 0 1 1 0 0.016 0.58 -472 TRIP10 thyroid hormone receptor interactor 10 802074 3 3 3 0 0 1 0 0 2 0 0.016 0.58 -473 C2orf73 441090 3 3 3 0 0 2 1 0 0 0 0.016 0.58 -474 GDF6 growth differentiation factor 6 404079 2 2 2 0 1 0 0 0 1 0 0.016 0.58 -475 FRMPD4 FERM and PDZ domain containing 4 2023944 6 6 6 1 3 3 0 0 0 0 0.016 0.58 -476 HPSE heparanase 734643 3 3 3 0 1 1 0 0 1 0 0.016 0.58 -477 SLC9A3R1 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 311805 2 2 2 0 0 0 1 0 1 0 0.016 0.58 -478 ACTN4 actinin, alpha 4 1134666 4 4 4 1 0 1 1 0 2 0 0.016 0.58 -479 PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 1002339 3 3 3 2 1 0 0 1 1 0 0.016 0.58 -480 TACSTD2 tumor-associated calcium signal transducer 2 138918 1 1 1 0 0 0 0 1 0 0 0.016 0.58 -481 XBP1 X-box binding protein 1 376194 2 2 2 0 0 0 0 0 2 0 0.016 0.58 -482 GDI1 GDP dissociation inhibitor 1 678873 3 3 3 1 2 0 1 0 0 0 0.016 0.58 -483 TTC9C tetratricopeptide repeat domain 9C 267696 2 2 2 0 0 2 0 0 0 0 0.016 0.58 -484 DSCAML1 Down syndrome cell adhesion molecule like 1 2740842 7 7 7 1 0 3 1 0 3 0 0.016 0.58 -485 ZDHHC17 zinc finger, DHHC-type containing 17 928824 4 4 4 1 1 2 0 1 0 0 0.017 0.58 -486 RTN4RL2 reticulon 4 receptor-like 2 416247 2 2 2 0 0 1 1 0 0 0 0.017 0.58 -487 HIST1H2AD histone cluster 1, H2ad 201279 2 2 2 1 0 1 1 0 0 0 0.017 0.58 -488 C9orf153 chromosome 9 open reading frame 153 161226 1 1 1 0 0 0 0 0 1 0 0.017 0.58 -489 C1orf49 chromosome 1 open reading frame 49 386334 2 2 2 0 0 1 0 1 0 0 0.017 0.58 -490 GRPEL2 GrpE-like 2, mitochondrial (E. coli) 310791 2 2 2 0 1 0 0 0 1 0 0.017 0.58 -491 PID1 phosphotyrosine interaction domain containing 1 320424 2 2 2 0 0 1 0 0 1 0 0.017 0.58 -492 N4BP3 565812 3 3 2 0 2 1 0 0 0 0 0.017 0.58 -493 RPL41 ribosomal protein L41 21801 1 1 1 0 0 0 0 1 0 0 0.017 0.58 -494 ANKK1 ankyrin repeat and kinase domain containing 1 953667 3 3 3 0 0 1 1 0 1 0 0.017 0.58 -495 TMEM213 159198 1 1 1 0 0 0 0 0 1 0 0.017 0.58 -496 PLCB4 phospholipase C, beta 4 1910883 6 6 6 0 2 1 2 0 1 0 0.017 0.58 -497 EARS2 glutamyl-tRNA synthetase 2, mitochondrial (putative) 651495 3 3 3 0 1 0 2 0 0 0 0.017 0.58 -498 ZFPM2 zinc finger protein, multitype 2 1746108 6 6 6 1 4 0 1 0 1 0 0.017 0.58 -499 IFIT5 interferon-induced protein with tetratricopeptide repeats 5 734136 3 3 3 0 0 1 1 0 1 0 0.017 0.58 -500 SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) 165282 1 1 1 0 0 0 0 0 1 0 0.017 0.58 -501 DGKG diacylglycerol kinase, gamma 90kDa 1245699 4 4 3 2 0 2 0 1 1 0 0.017 0.58 -502 HIST1H2BB histone cluster 1, H2bb 195195 2 2 2 0 1 0 1 0 0 0 0.017 0.58 -503 SFRS16 splicing factor, arginine/serine-rich 16 593697 3 3 3 0 1 1 0 1 0 0 0.017 0.58 -504 PERP PERP, TP53 apoptosis effector 248430 2 2 2 0 0 1 1 0 0 0 0.017 0.58 -505 ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein 122187 1 1 1 0 0 0 1 0 0 0 0.017 0.58 -506 C19orf53 chromosome 19 open reading frame 53 152100 1 1 1 1 0 0 0 1 0 0 0.017 0.58 -507 LASP1 LIM and SH3 protein 1 240318 2 2 2 2 0 1 1 0 0 0 0.017 0.58 -508 KISS1 KiSS-1 metastasis-suppressor 77064 1 1 1 0 0 0 0 0 1 0 0.017 0.58 -509 CLRN2 clarin 2 350844 2 2 2 0 0 1 1 0 0 0 0.017 0.58 -510 PPP3CA protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform 790920 3 3 3 0 0 0 3 0 0 0 0.017 0.58 -511 FDXR ferredoxin reductase 607386 3 3 2 0 0 2 1 0 0 0 0.017 0.59 -512 SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 627159 3 3 3 0 0 2 1 0 0 0 0.017 0.59 -513 LPA lipoprotein, Lp(a) 2280486 5 5 5 0 0 2 1 0 2 0 0.018 0.60 -514 FBXO21 F-box protein 21 854295 3 3 3 1 0 2 0 0 1 0 0.018 0.60 -515 NSMCE4A non-SMC element 4 homolog A (S. cerevisiae) 455793 2 2 2 0 0 1 0 0 1 0 0.018 0.60 -516 DOT1L DOT1-like, histone H3 methyltransferase (S. cerevisiae) 719940 3 3 3 0 0 1 0 1 1 0 0.018 0.60 -517 RBM24 RNA binding motif protein 24 298116 2 2 2 0 0 1 1 0 0 0 0.018 0.60 -518 TAAR5 trace amine associated receptor 5 516126 3 3 3 0 0 1 2 0 0 0 0.018 0.60 -519 FGF3 fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog) 116103 1 1 1 0 0 1 0 0 0 0 0.018 0.60 -520 ADAM29 ADAM metallopeptidase domain 29 1250769 5 5 5 0 3 1 0 0 1 0 0.018 0.60 -521 UCK2 uridine-cytidine kinase 2 360477 2 2 2 3 0 0 1 0 1 0 0.018 0.60 -522 OR4K14 olfactory receptor, family 4, subfamily K, member 14 475059 3 3 3 0 2 0 1 0 0 0 0.018 0.60 -523 PILRB paired immunoglobin-like type 2 receptor beta 354900 2 2 2 0 0 0 1 0 1 0 0.018 0.60 -524 SNX3 sorting nexin 3 211419 2 2 2 0 1 0 1 0 0 0 0.018 0.60 -525 SUMO1 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) 157170 1 1 1 0 0 0 0 0 1 0 0.018 0.60 -526 CTNND2 catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) 1583868 6 5 6 0 0 1 2 0 1 2 0.018 0.60 -527 ASXL2 additional sex combs like 2 (Drosophila) 2208492 6 6 6 1 0 1 2 0 3 0 0.018 0.60 -528 HRC histidine rich calcium binding protein 1076868 3 3 3 1 0 1 0 0 2 0 0.019 0.60 -529 CIT citron (rho-interacting, serine/threonine kinase 21) 3088644 8 8 8 1 4 3 1 0 0 0 0.019 0.60 -530 GABRA6 gamma-aminobutyric acid (GABA) A receptor, alpha 6 708786 3 3 3 0 1 1 1 0 0 0 0.019 0.60 -531 PRKCDBP protein kinase C, delta binding protein 207870 2 2 2 0 1 0 1 0 0 0 0.019 0.60 -532 ZNF625 zinc finger protein 625 468975 3 3 3 0 1 1 0 1 0 0 0.019 0.60 -533 POU4F1 POU class 4 homeobox 1 168831 1 1 1 0 0 0 0 0 1 0 0.019 0.60 -534 SPATA4 spermatogenesis associated 4 460863 2 2 2 0 0 1 0 0 1 0 0.019 0.60 -535 SQSTM1 sequestosome 1 556179 3 3 3 0 1 0 1 0 1 0 0.019 0.60 -536 FXYD4 FXYD domain containing ion transport regulator 4 151086 1 1 1 0 0 0 0 0 1 0 0.019 0.60 -537 IGDCC3 1161030 4 4 4 0 0 2 0 2 0 0 0.019 0.60 -538 PGLS 6-phosphogluconolactonase 226122 2 2 2 1 1 0 0 0 1 0 0.019 0.60 -539 SHROOM2 shroom family member 2 1660932 5 5 5 1 0 3 1 0 1 0 0.019 0.60 -540 DSC2 desmocollin 2 643890 3 3 3 0 2 0 1 0 0 0 0.019 0.60 -541 SHANK1 SH3 and multiple ankyrin repeat domains 1 1291836 4 4 4 0 2 2 0 0 0 0 0.019 0.61 -542 ANAPC5 anaphase promoting complex subunit 5 1158495 4 4 4 1 1 1 1 0 1 0 0.019 0.61 -543 SLC25A13 solute carrier family 25, member 13 (citrin) 1056588 4 4 4 1 1 1 1 0 1 0 0.019 0.61 -544 SDK1 sidekick homolog 1, cell adhesion molecule (chicken) 2813850 6 6 6 1 0 4 1 0 1 0 0.019 0.61 -545 DLGAP2 discs, large (Drosophila) homolog-associated protein 2 704223 3 3 3 1 0 3 0 0 0 0 0.019 0.61 -546 C6orf27 chromosome 6 open reading frame 27 1164579 4 4 4 2 1 2 1 0 0 0 0.019 0.61 -547 RAD54B RAD54 homolog B (S. cerevisiae) 1414023 4 4 4 0 1 1 0 1 1 0 0.019 0.61 -548 TRIM5 tripartite motif-containing 5 841113 3 3 3 1 0 0 1 0 2 0 0.019 0.61 -549 CAPN1 calpain 1, (mu/I) large subunit 711828 3 3 3 0 0 2 1 0 0 0 0.019 0.61 -550 DHRS2 dehydrogenase/reductase (SDR family) member 2 474045 2 2 2 0 0 0 0 1 1 0 0.019 0.61 -551 SCUBE1 signal peptide, CUB domain, EGF-like 1 567840 3 3 3 0 0 2 0 1 0 0 0.019 0.61 -552 WDR7 WD repeat domain 7 2321046 7 7 7 0 0 2 2 1 2 0 0.020 0.61 -553 E2F4 E2F transcription factor 4, p107/p130-binding 471003 2 2 2 0 0 0 0 0 2 0 0.020 0.61 -554 IRX2 iroquois homeobox 2 196716 2 2 2 0 1 1 0 0 0 0 0.020 0.61 -555 PEG3 paternally expressed 3 2397603 7 7 7 0 0 4 1 1 1 0 0.020 0.61 -556 BTBD17 244374 2 2 2 1 0 2 0 0 0 0 0.020 0.61 -557 MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 1545336 4 4 4 0 0 2 0 0 2 0 0.020 0.61 -558 ACVR2A activin A receptor, type IIA 798525 3 3 3 1 0 1 2 0 0 0 0.020 0.61 -559 SF4 splicing factor 4 796497 4 3 4 1 0 1 1 0 0 2 0.020 0.61 -560 PLEKHG5 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 860886 3 3 3 0 0 1 1 0 1 0 0.020 0.61 -561 FGF7 fibroblast growth factor 7 (keratinocyte growth factor) 302679 2 2 2 0 0 0 1 0 1 0 0.020 0.61 -562 STAT5B signal transducer and activator of transcription 5B 1131117 4 4 4 1 0 2 0 1 1 0 0.020 0.62 -563 KIAA1751 KIAA1751 1101204 4 4 4 0 0 3 0 0 1 0 0.020 0.62 -564 RPL35 ribosomal protein L35 191139 2 2 2 0 0 0 1 1 0 0 0.020 0.62 -565 C21orf33 chromosome 21 open reading frame 33 179985 1 1 1 1 0 0 0 1 0 0 0.020 0.62 -566 GAGE2B G antigen 2B 106470 1 1 1 0 0 0 1 0 0 0 0.020 0.62 -567 ANKRD53 ankyrin repeat domain 53 470496 2 2 2 2 0 1 0 1 0 0 0.020 0.62 -568 CNIH cornichon homolog (Drosophila) 128271 1 1 1 0 0 0 0 0 1 0 0.020 0.62 -569 DBNDD2 dysbindin (dystrobrevin binding protein 1) domain containing 2 175929 1 1 1 0 0 0 0 0 1 0 0.020 0.62 -570 GRID1 glutamate receptor, ionotropic, delta 1 1464216 5 5 5 0 1 3 1 0 0 0 0.020 0.62 -571 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3255954 6 6 6 1 1 1 2 0 2 0 0.021 0.62 -572 IFNA2 interferon, alpha 2 289497 2 2 2 0 0 1 0 1 0 0 0.021 0.62 -573 CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 1133652 4 4 4 1 0 3 1 0 0 0 0.021 0.62 -574 WDR47 WD repeat domain 47 648453 3 3 3 0 0 2 0 0 1 0 0.021 0.62 -575 MED12 mediator complex subunit 12 3336060 8 8 8 2 0 4 0 2 2 0 0.021 0.62 -576 SEC13 SEC13 homolog (S. cerevisiae) 481650 2 2 2 0 0 1 0 0 1 0 0.021 0.62 -577 CHGB chromogranin B (secretogranin 1) 1014507 4 4 4 0 1 1 0 1 1 0 0.021 0.62 -578 SRXN1 sulfiredoxin 1 homolog (S. cerevisiae) 98865 1 1 1 0 1 0 0 0 0 0 0.021 0.62 -579 MRPL45 mitochondrial ribosomal protein L45 483171 2 2 2 2 0 0 0 1 1 0 0.021 0.62 -580 KCNK4 potassium channel, subfamily K, member 4 406614 2 2 2 0 1 0 0 0 1 0 0.021 0.62 -581 C5orf25 chromosome 5 open reading frame 25 647439 3 3 3 0 1 1 1 0 0 0 0.021 0.62 -582 RAB9B RAB9B, member RAS oncogene family 309270 2 2 2 1 0 2 0 0 0 0 0.021 0.62 -583 WSCD1 WSC domain containing 1 659607 3 3 3 0 0 1 2 0 0 0 0.021 0.62 -584 CD1D CD1d molecule 490269 2 2 2 1 0 1 0 0 1 0 0.021 0.62 -585 LCA5L Leber congenital amaurosis 5-like 1034787 4 4 4 0 0 1 2 0 1 0 0.021 0.62 -586 DBX2 developing brain homeobox 2 305721 2 2 2 0 1 0 1 0 0 0 0.021 0.62 -587 BCAT1 branched chain aminotransferase 1, cytosolic 614484 3 3 3 1 1 1 1 0 0 0 0.021 0.62 -588 SLC17A6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 911079 4 4 4 0 2 1 0 1 0 0 0.021 0.62 -589 UBE2D2 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) 225108 2 2 2 0 0 1 1 0 0 0 0.021 0.62 -590 LDB2 LIM domain binding 2 585078 3 3 3 0 2 1 0 0 0 0 0.021 0.62 -591 OR6S1 olfactory receptor, family 6, subfamily S, member 1 507000 3 3 3 1 2 1 0 0 0 0 0.021 0.62 -592 TRPS1 trichorhinophalangeal syndrome I 1981863 6 5 6 0 1 1 2 0 0 2 0.021 0.62 -593 PHACTR1 phosphatase and actin regulator 1 833508 3 3 3 0 1 1 0 0 1 0 0.021 0.62 -594 LCE1D late cornified envelope 1D 176943 1 1 1 0 0 0 0 0 1 0 0.021 0.62 -595 PMEPA1 prostate transmembrane protein, androgen induced 1 272766 3 2 3 0 0 1 0 0 2 0 0.022 0.63 -596 VWA3A von Willebrand factor A domain containing 3A 1584882 4 4 4 2 0 0 1 1 2 0 0.022 0.63 -597 TRAPPC5 trafficking protein particle complex 5 113568 1 1 1 0 0 0 1 0 0 0 0.022 0.63 -598 AQP7 aquaporin 7 520689 2 2 2 0 0 0 0 1 1 0 0.022 0.63 -599 TARBP2 TAR (HIV-1) RNA binding protein 2 493311 2 2 2 0 0 0 0 0 2 0 0.022 0.63 -600 HLA-G major histocompatibility complex, class I, G 515619 2 2 2 1 0 1 0 0 1 0 0.022 0.63 -601 HOMER2 homer homolog 2 (Drosophila) 510042 3 3 3 1 0 3 0 0 0 0 0.022 0.63 -602 B2M beta-2-microglobulin 188604 2 2 2 0 1 1 0 0 0 0 0.022 0.63 -603 ZFHX4 zinc finger homeobox 4 5477628 13 12 13 3 6 4 2 0 1 0 0.022 0.63 -604 GRIK1 glutamate receptor, ionotropic, kainate 1 1448499 5 5 5 0 3 0 1 0 1 0 0.022 0.63 -605 GUCY2C guanylate cyclase 2C (heat stable enterotoxin receptor) 1688310 5 5 4 0 2 1 1 0 1 0 0.022 0.63 -606 CRABP1 cellular retinoic acid binding protein 1 87711 1 1 1 1 0 0 1 0 0 0 0.022 0.63 -607 PIAS4 protein inhibitor of activated STAT, 4 246402 2 2 2 1 1 1 0 0 0 0 0.022 0.63 -608 ABHD6 abhydrolase domain containing 6 530322 2 2 2 0 0 0 1 0 1 0 0.022 0.63 -609 FAM123B family with sequence similarity 123B 1729884 5 5 5 2 0 3 2 0 0 0 0.022 0.63 -610 TNIP2 TNFAIP3 interacting protein 2 494832 2 2 2 0 0 1 0 0 1 0 0.022 0.63 -611 CYP7B1 cytochrome P450, family 7, subfamily B, polypeptide 1 719433 3 3 3 0 0 2 0 0 1 0 0.022 0.63 -612 SSNA1 Sjogren syndrome nuclear autoantigen 1 73008 1 1 1 0 1 0 0 0 0 0 0.022 0.63 -613 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 497874 2 2 2 0 0 0 0 0 2 0 0.022 0.63 -614 MMP14 matrix metallopeptidase 14 (membrane-inserted) 871026 3 3 2 0 0 3 0 0 0 0 0.022 0.63 -615 FOLR4 379236 2 2 2 0 0 1 0 0 1 0 0.022 0.63 -616 TBC1D22B TBC1 domain family, member 22B 737685 3 3 3 0 0 2 1 0 0 0 0.022 0.63 -617 DNAJC25-GNG10 65910 1 1 1 0 0 0 0 1 0 0 0.023 0.63 -618 ZNF229 zinc finger protein 229 1264458 4 4 4 0 1 1 0 1 1 0 0.023 0.63 -619 ECE1 endothelin converting enzyme 1 1056081 3 3 3 0 0 1 1 0 1 0 0.023 0.63 -620 ZNF3 zinc finger protein 3 752388 3 3 3 1 0 2 0 1 0 0 0.023 0.63 -621 C21orf57 chromosome 21 open reading frame 57 189618 1 1 1 0 0 0 0 0 1 0 0.023 0.63 -622 USPL1 ubiquitin specific peptidase like 1 1678677 5 5 5 1 2 1 1 0 1 0 0.023 0.63 -623 CAMK2D calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 758979 3 3 3 0 1 0 1 0 1 0 0.023 0.63 -624 SMYD3 SET and MYND domain containing 3 591669 3 3 3 1 2 0 0 0 1 0 0.023 0.63 -625 ATP6V0E1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 130806 1 1 1 0 0 0 0 1 0 0 0.023 0.64 -626 GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3 480636 2 2 2 0 0 1 0 0 1 0 0.023 0.64 -627 WNT11 wingless-type MMTV integration site family, member 11 362505 2 2 2 0 1 0 0 0 1 0 0.023 0.64 -628 FLNB filamin B, beta (actin binding protein 278) 4043832 7 7 7 0 1 0 1 1 4 0 0.023 0.64 -629 TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 836043 3 3 3 1 0 1 0 1 1 0 0.023 0.64 -630 MYCL1 v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) 305721 2 2 2 0 0 1 1 0 0 0 0.023 0.64 -631 ACTN2 actinin, alpha 2 1337973 4 4 4 3 1 1 1 0 1 0 0.023 0.64 -632 C9orf114 chromosome 9 open reading frame 114 472017 2 2 2 2 1 0 1 0 0 0 0.023 0.64 -633 ATCAY ataxia, cerebellar, Cayman type (caytaxin) 443625 2 2 2 1 0 0 0 2 0 0 0.023 0.64 -634 FBXO18 F-box protein, helicase, 18 1710111 3 3 3 1 0 1 0 0 2 0 0.023 0.64 -635 DHX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 1153932 3 3 3 1 0 1 1 0 1 0 0.023 0.64 -636 GRIK2 glutamate receptor, ionotropic, kainate 2 1441401 5 5 5 0 0 1 4 0 0 0 0.024 0.64 -637 OR10Z1 olfactory receptor, family 10, subfamily Z, member 1 479622 2 2 2 0 0 1 0 1 0 0 0.024 0.64 -638 KLHDC9 kelch domain containing 9 359970 2 2 1 0 0 0 2 0 0 0 0.024 0.64 -639 SNX25 sorting nexin 25 1312623 4 4 4 0 1 2 0 0 1 0 0.024 0.64 -640 DNAJC27 384813 2 2 2 0 0 0 0 0 2 0 0.024 0.64 -641 TGFA transforming growth factor, alpha 165282 1 1 1 0 0 0 0 1 0 0 0.024 0.64 -642 HIST1H2AB histone cluster 1, H2ab 201279 2 2 2 0 1 0 1 0 0 0 0.024 0.64 -643 ANKRD6 ankyrin repeat domain 6 988650 4 4 4 0 2 0 2 0 0 0 0.024 0.64 -644 ZNF540 zinc finger protein 540 1002339 4 4 4 0 1 2 1 0 0 0 0.024 0.64 -645 MSL2 883194 3 3 3 0 0 1 0 1 1 0 0.024 0.64 -646 C5orf49 154635 1 1 1 1 0 0 1 0 0 0 0.024 0.64 -647 C10orf71 chromosome 10 open reading frame 71 1148862 4 4 4 0 3 0 1 0 0 0 0.024 0.64 -648 T T, brachyury homolog (mouse) 530829 3 3 3 0 1 0 1 0 1 0 0.024 0.64 -649 C13orf33 chromosome 13 open reading frame 33 356928 2 2 2 0 1 0 0 1 0 0 0.024 0.64 -650 CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 792948 3 3 3 1 0 1 1 0 1 0 0.024 0.64 -651 WTAP Wilms tumor 1 associated protein 620061 3 3 3 1 1 0 1 0 1 0 0.024 0.64 -652 TMEM27 transmembrane protein 27 351351 2 2 2 0 0 2 0 0 0 0 0.024 0.64 -653 ECM1 extracellular matrix protein 1 843141 3 3 3 0 0 2 1 0 0 0 0.024 0.64 -654 LRP12 low density lipoprotein-related protein 12 1280175 4 4 4 1 1 2 0 0 1 0 0.024 0.64 -655 PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A 81627 1 1 1 0 0 0 0 0 1 0 0.024 0.64 -656 IL17B interleukin 17B 280371 2 2 1 0 0 2 0 0 0 0 0.024 0.64 -657 TERF2IP telomeric repeat binding factor 2, interacting protein 276315 2 2 2 0 0 1 1 0 0 0 0.024 0.64 -658 MRPL15 mitochondrial ribosomal protein L15 405093 2 2 2 0 1 0 1 0 0 0 0.024 0.64 -659 TYR tyrosinase (oculocutaneous albinism IA) 816270 3 3 3 2 0 2 1 0 0 0 0.024 0.64 -660 PGK1 phosphoglycerate kinase 1 296595 2 2 2 0 1 1 0 0 0 0 0.024 0.64 -661 LINGO1 leucine rich repeat and Ig domain containing 1 913614 3 3 3 0 1 2 0 0 0 0 0.024 0.64 -662 PVRL2 poliovirus receptor-related 2 (herpesvirus entry mediator B) 799032 3 3 3 0 0 1 1 0 1 0 0.025 0.64 -663 C20orf12 chromosome 20 open reading frame 12 1083966 4 4 4 0 0 3 0 0 1 0 0.025 0.64 -664 NUP160 nucleoporin 160kDa 2255643 6 6 6 0 0 3 2 0 1 0 0.025 0.64 -665 PRKG2 protein kinase, cGMP-dependent, type II 1194492 4 4 4 0 0 0 2 1 1 0 0.025 0.64 -666 TSSK3 testis-specific serine kinase 3 413205 2 2 2 0 0 0 1 0 1 0 0.025 0.64 -667 PCDHGB5 protocadherin gamma subfamily B, 5 1321242 4 4 4 0 1 2 0 1 0 0 0.025 0.64 -668 A2BP1 696618 3 3 3 1 1 2 0 0 0 0 0.025 0.64 -669 C15orf52 chromosome 15 open reading frame 52 706758 3 3 3 0 1 0 1 0 1 0 0.025 0.64 -670 SLC17A7 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 798525 3 3 3 0 0 1 0 0 2 0 0.025 0.64 -671 GSPT1 G1 to S phase transition 1 755937 3 3 3 1 2 0 0 0 1 0 0.025 0.64 -672 SLC27A5 solute carrier family 27 (fatty acid transporter), member 5 512070 2 2 2 0 0 1 0 0 1 0 0.025 0.64 -673 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1308567 4 4 4 4 2 1 0 0 1 0 0.025 0.64 -674 SORCS1 sortilin-related VPS10 domain containing receptor 1 1817595 5 5 5 1 0 3 0 1 1 0 0.025 0.64 -675 C14orf37 chromosome 14 open reading frame 37 1192971 4 4 4 0 1 1 1 0 1 0 0.025 0.64 -676 LIN9 lin-9 homolog (C. elegans) 880659 3 3 3 0 0 0 1 0 2 0 0.025 0.64 -677 SLC38A10 solute carrier family 38, member 10 733629 2 2 2 0 0 0 0 0 2 0 0.025 0.64 -678 CPSF4 cleavage and polyadenylation specific factor 4, 30kDa 372645 2 2 2 0 1 0 1 0 0 0 0.025 0.64 -679 KRTAP4-2 keratin associated protein 4-2 210405 2 2 2 0 0 1 1 0 0 0 0.025 0.64 -680 BIRC8 baculoviral IAP repeat-containing 8 362505 2 2 2 0 0 1 1 0 0 0 0.025 0.64 -681 ATP1A4 ATPase, Na+/K+ transporting, alpha 4 polypeptide 1611246 5 5 5 0 0 1 4 0 0 0 0.025 0.64 -682 RAMP3 receptor (G protein-coupled) activity modifying protein 3 201279 1 1 1 0 0 0 0 0 1 0 0.025 0.65 -683 VMAC 68952 1 1 1 0 0 1 0 0 0 0 0.026 0.65 -684 HNRNPH3 546039 2 2 2 0 0 0 0 1 1 0 0.026 0.65 -685 MBD3 methyl-CpG binding domain protein 3 194181 1 1 1 0 0 0 1 0 0 0 0.026 0.65 -686 PDE9A phosphodiesterase 9A 848718 3 3 3 0 0 1 1 0 1 0 0.026 0.65 -687 GLB1L3 galactosidase, beta 1-like 3 819312 3 3 3 1 0 2 1 0 0 0 0.026 0.65 -688 KANK2 KN motif and ankyrin repeat domains 2 1164072 4 4 4 1 0 1 2 0 1 0 0.026 0.65 -689 ZNF658 zinc finger protein 658 1540773 5 5 5 2 2 0 3 0 0 0 0.026 0.65 -690 AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 466947 2 2 2 0 0 1 0 0 1 0 0.026 0.65 -691 ZNF69 zinc finger protein 69 234741 2 2 2 0 0 1 1 0 0 0 0.026 0.65 -692 NR0B2 nuclear receptor subfamily 0, group B, member 2 306228 2 2 2 0 0 1 1 0 0 0 0.026 0.65 -693 NR5A2 nuclear receptor subfamily 5, group A, member 2 835536 4 3 4 1 2 0 0 0 0 2 0.026 0.65 -694 ZGPAT zinc finger, CCCH-type with G patch domain 344253 2 2 1 0 0 0 2 0 0 0 0.026 0.65 -695 NDUFA1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa 114075 1 1 1 1 0 1 0 0 0 0 0.026 0.65 -696 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2026479 6 6 6 1 3 1 1 0 1 0 0.026 0.65 -697 RAB42 RAB42, member RAS oncogene family 110019 1 1 1 0 0 1 0 0 0 0 0.026 0.65 -698 ASL argininosuccinate lyase 586092 3 3 3 0 1 1 1 0 0 0 0.026 0.65 -699 IDI1 isopentenyl-diphosphate delta isomerase 1 370617 2 2 2 0 1 1 0 0 0 0 0.026 0.65 -700 CSMD1 CUB and Sushi multiple domains 1 4348539 11 10 11 10 2 4 3 0 2 0 0.026 0.65 -701 MYO9B myosin IXB 2354508 6 6 6 2 1 1 3 0 1 0 0.026 0.65 -702 MACROD1 MACRO domain containing 1 143481 1 1 1 0 0 1 0 0 0 0 0.027 0.65 -703 OR8D4 olfactory receptor, family 8, subfamily D, member 4 481143 2 2 2 0 0 0 1 0 1 0 0.027 0.65 -704 ARL11 ADP-ribosylation factor-like 11 274794 2 2 2 0 0 2 0 0 0 0 0.027 0.65 -705 ELOVL3 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 420303 2 2 2 0 0 0 0 1 1 0 0.027 0.65 -706 GRIN2C glutamate receptor, ionotropic, N-methyl D-aspartate 2C 1021098 4 4 3 1 2 0 2 0 0 0 0.027 0.65 -707 BCAS1 breast carcinoma amplified sequence 1 912093 3 3 3 0 0 1 1 0 1 0 0.027 0.65 -708 HDAC11 histone deacetylase 11 455286 2 2 2 0 1 1 0 0 0 0 0.027 0.65 -709 OR8H1 olfactory receptor, family 8, subfamily H, member 1 476580 2 2 2 1 0 1 1 0 0 0 0.027 0.65 -710 MBLAC1 102414 1 1 1 0 0 0 0 0 1 0 0.027 0.65 -711 NEFM neurofilament, medium polypeptide 150kDa 852774 4 3 4 0 1 2 1 0 0 0 0.027 0.65 -712 BTNL8 butyrophilin-like 8 324480 2 2 2 0 0 1 1 0 0 0 0.027 0.65 -713 PCDH9 protocadherin 9 1891110 4 4 4 0 1 0 2 0 1 0 0.027 0.65 -714 PLIN1 457821 2 2 2 1 1 1 0 0 0 0 0.027 0.65 -715 TFPI2 tissue factor pathway inhibitor 2 361491 2 2 2 0 0 1 0 0 1 0 0.027 0.65 -716 INSL3 insulin-like 3 (Leydig cell) 106470 1 1 1 1 0 1 0 0 0 0 0.027 0.65 -717 VNN2 vanin 2 806637 3 3 3 0 0 1 2 0 0 0 0.027 0.66 -718 OR4A5 olfactory receptor, family 4, subfamily A, member 5 482664 2 2 2 0 0 0 1 1 0 0 0.027 0.66 -719 HAO1 hydroxyacid oxidase (glycolate oxidase) 1 580515 3 3 3 0 0 2 1 0 0 0 0.027 0.66 -720 GNRH2 gonadotropin-releasing hormone 2 102921 1 1 1 0 0 0 0 0 1 0 0.027 0.66 -721 KLHDC8B kelch domain containing 8B 504465 2 2 2 0 0 0 1 0 1 0 0.028 0.66 -722 SIGLEC9 sialic acid binding Ig-like lectin 9 719940 3 3 3 1 0 2 1 0 0 0 0.028 0.66 -723 ELK1 ELK1, member of ETS oncogene family 321945 2 2 2 0 0 1 1 0 0 0 0.028 0.66 -724 KITLG KIT ligand 425373 2 2 2 0 1 0 1 0 0 0 0.028 0.66 -725 MCRS1 microspherule protein 1 732615 3 3 3 0 0 1 1 1 0 0 0.028 0.66 -726 TIPIN TIMELESS interacting protein 473538 2 2 2 0 0 0 2 0 0 0 0.028 0.66 -727 TRIM67 tripartite motif-containing 67 681408 3 3 3 2 1 0 1 1 0 0 0.028 0.66 -728 ECHS1 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial 212433 1 1 1 1 0 0 0 1 0 0 0.028 0.66 -729 MYH14 myosin, heavy chain 14 1854099 5 5 5 2 1 1 1 0 2 0 0.028 0.66 -730 DIRAS2 DIRAS family, GTP-binding RAS-like 2 306228 2 2 2 1 1 1 0 0 0 0 0.028 0.66 -731 ZNF589 zinc finger protein 589 539448 2 2 1 0 0 0 0 2 0 0 0.028 0.66 -732 PTGER3 prostaglandin E receptor 3 (subtype EP3) 445653 2 2 2 1 0 0 2 0 0 0 0.028 0.66 -733 KLK12 kallikrein-related peptidase 12 288990 2 2 2 1 0 1 0 0 1 0 0.028 0.66 -734 LHCGR luteinizing hormone/choriogonadotropin receptor 1003353 4 4 4 0 1 1 1 1 0 0 0.028 0.66 -735 CEP68 centrosomal protein 68kDa 1163058 4 4 4 1 1 2 0 1 0 0 0.028 0.66 -736 ATG4D ATG4 autophagy related 4 homolog D (S. cerevisiae) 621582 3 3 3 0 0 2 0 1 0 0 0.028 0.66 -737 B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 408135 2 2 2 0 0 1 0 1 0 0 0.028 0.66 -738 RBM8A RNA binding motif protein 8A 271245 2 2 2 0 1 1 0 0 0 0 0.028 0.66 -739 FAM55A family with sequence similarity 55, member A 625638 3 3 3 0 0 1 1 1 0 0 0.028 0.66 -740 ELOVL5 ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) 470496 2 2 2 0 0 0 1 0 1 0 0.028 0.66 -741 PPHLN1 periphilin 1 744783 3 3 3 0 0 1 1 0 1 0 0.028 0.66 -742 CLYBL citrate lyase beta like 501423 2 2 2 0 0 1 0 1 0 0 0.028 0.66 -743 KLK5 kallikrein-related peptidase 5 314340 2 2 2 0 0 2 0 0 0 0 0.029 0.66 -744 RETSAT retinol saturase (all-trans-retinol 13,14-reductase) 950118 3 3 3 0 0 1 0 0 2 0 0.029 0.66 -745 CRB2 crumbs homolog 2 (Drosophila) 855309 3 3 3 0 0 2 1 0 0 0 0.029 0.66 -746 KIF17 kinesin family member 17 1165593 4 4 4 0 0 3 1 0 0 0 0.029 0.66 -747 POR P450 (cytochrome) oxidoreductase 321945 2 2 2 0 0 0 1 0 1 0 0.029 0.66 -748 TARS threonyl-tRNA synthetase 1139736 4 4 4 1 1 1 2 0 0 0 0.029 0.66 -749 BRMS1 breast cancer metastasis suppressor 1 465426 2 2 2 0 0 0 1 0 1 0 0.029 0.66 -750 HSPA8 heat shock 70kDa protein 8 1000311 3 3 3 0 0 0 0 1 2 0 0.029 0.66 -751 CDC25B cell division cycle 25 homolog B (S. pombe) 812214 3 3 3 1 0 1 0 2 0 0 0.029 0.66 -752 YIPF7 Yip1 domain family, member 7 360477 2 2 2 0 1 1 0 0 0 0 0.029 0.66 -753 BMPER BMP binding endothelial regulator 1004367 4 4 4 1 2 0 2 0 0 0 0.029 0.66 -754 IQCF1 IQ motif containing F1 321438 2 2 2 0 0 2 0 0 0 0 0.029 0.66 -755 PODN podocan 667212 3 3 3 1 1 1 1 0 0 0 0.029 0.66 -756 CRX cone-rod homeobox 462384 2 2 2 0 1 1 0 0 0 0 0.029 0.66 -757 RGS17 regulator of G-protein signaling 17 329043 2 2 2 0 0 0 1 0 1 0 0.029 0.66 -758 ETS2 v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) 727038 3 3 3 1 1 0 2 0 0 0 0.029 0.66 -759 TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast) 153114 1 1 1 0 0 0 0 0 1 0 0.029 0.66 -760 OR5AK2 olfactory receptor, family 5, subfamily AK, member 2 473538 2 2 2 0 0 1 0 0 1 0 0.029 0.67 -761 PEX2 467454 2 2 2 1 0 2 0 0 0 0 0.029 0.67 -762 TMEM170A 157170 1 1 1 0 0 0 1 0 0 0 0.029 0.67 -763 CASP5 caspase 5, apoptosis-related cysteine peptidase 694083 3 3 2 0 1 0 0 2 0 0 0.029 0.67 -764 C10orf47 chromosome 10 open reading frame 47 209898 1 1 1 0 0 0 0 0 1 0 0.029 0.67 -765 GLRX2 glutaredoxin 2 199758 1 1 1 1 0 0 0 0 1 0 0.030 0.67 -766 RAB33A RAB33A, member RAS oncogene family 364533 2 2 2 0 0 1 1 0 0 0 0.030 0.67 -767 COL22A1 collagen, type XXII, alpha 1 2243475 6 6 6 0 1 3 0 0 2 0 0.030 0.67 -768 CD164 CD164 molecule, sialomucin 222573 1 1 1 0 0 0 0 0 1 0 0.030 0.67 -769 CNFN cornifelin 100893 1 1 1 0 0 1 0 0 0 0 0.030 0.67 -770 C17orf67 chromosome 17 open reading frame 67 180492 1 1 1 0 0 0 1 0 0 0 0.030 0.67 -771 PLCG1 phospholipase C, gamma 1 1917474 4 4 4 0 1 1 0 0 2 0 0.030 0.67 -772 CSNK1A1L casein kinase 1, alpha 1-like 516126 2 2 2 0 0 1 1 0 0 0 0.030 0.67 -773 PJA1 praja 1 981552 3 3 3 0 0 2 0 0 1 0 0.030 0.67 -774 SCN2A sodium channel, voltage-gated, type II, alpha subunit 3152526 7 7 7 2 2 3 0 1 1 0 0.030 0.67 -775 RFC4 replication factor C (activator 1) 4, 37kDa 573924 3 2 3 0 0 0 1 0 0 2 0.030 0.67 -776 ALDOA aldolase A, fructose-bisphosphate 570375 3 3 3 0 1 1 0 1 0 0 0.030 0.67 -777 ZCWPW1 zinc finger, CW type with PWWP domain 1 1019577 4 4 4 0 0 1 1 0 2 0 0.031 0.68 -778 GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase) 626145 3 3 3 0 1 2 0 0 0 0 0.031 0.68 -779 CD99 CD99 molecule 267189 2 2 2 0 1 0 0 1 0 0 0.031 0.68 -780 CR1 complement component (3b/4b) receptor 1 (Knops blood group) 2561364 6 6 6 1 1 1 2 2 0 0 0.031 0.68 -781 PRB3 proline-rich protein BstNI subfamily 3 479622 2 2 2 0 0 0 1 0 1 0 0.031 0.68 -782 DCST1 DC-STAMP domain containing 1 926796 3 3 3 0 0 2 0 0 1 0 0.031 0.68 -783 TMEM51 transmembrane protein 51 360477 2 2 2 0 2 0 0 0 0 0 0.031 0.68 -784 HIST1H1T histone cluster 1, H1t 318396 2 2 2 0 0 1 1 0 0 0 0.031 0.68 -785 CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 1622400 5 5 5 2 2 2 1 0 0 0 0.031 0.68 -786 DCAF4L2 604344 3 3 3 0 3 0 0 0 0 0 0.031 0.68 -787 GDAP1 ganglioside-induced differentiation-associated protein 1 551109 2 2 2 0 0 1 0 1 0 0 0.031 0.68 -788 LGALS14 lectin, galactoside-binding, soluble, 14 274794 2 2 2 0 2 0 0 0 0 0 0.031 0.68 -789 AEBP1 AE binding protein 1 1096641 4 4 4 0 1 1 1 1 0 0 0.031 0.68 -790 KLK2 kallikrein-related peptidase 2 427401 2 2 2 0 0 1 1 0 0 0 0.031 0.68 -791 PDLIM7 PDZ and LIM domain 7 (enigma) 417768 2 2 2 0 0 1 1 0 0 0 0.031 0.68 -792 ELL2 elongation factor, RNA polymerase II, 2 922740 3 3 3 0 0 0 2 0 1 0 0.031 0.68 -793 TOR3A torsin family 3, member A 479622 2 2 2 0 0 1 1 0 0 0 0.031 0.68 -794 TBC1D21 TBC1 domain family, member 21 534885 2 2 2 0 0 1 0 0 1 0 0.031 0.68 -795 PGLYRP2 peptidoglycan recognition protein 2 802581 3 3 3 0 1 1 0 0 1 0 0.031 0.68 -796 MCTP2 multiple C2 domains, transmembrane 2 1381575 4 4 4 1 0 1 1 1 1 0 0.031 0.68 -797 IFITM1 interferon induced transmembrane protein 1 (9-27) 195702 1 1 1 0 0 0 0 0 1 0 0.031 0.68 -798 PNMA2 paraneoplastic antigen MA2 557193 2 2 2 0 1 0 1 0 0 0 0.031 0.68 -799 IL6 interleukin 6 (interferon, beta 2) 334113 2 2 2 1 0 0 0 0 2 0 0.031 0.68 -800 ALG10B asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase) 727038 3 3 3 1 1 1 1 0 0 0 0.031 0.68 -801 CNBD1 cyclic nucleotide binding domain containing 1 680901 3 3 3 0 2 0 0 1 0 0 0.031 0.68 -802 HPS1 Hermansky-Pudlak syndrome 1 895869 3 3 3 0 0 2 0 1 0 0 0.031 0.68 -803 MGAM maltase-glucoamylase (alpha-glucosidase) 2915250 8 7 8 5 0 3 3 1 1 0 0.031 0.68 -804 ZHX1 zinc fingers and homeoboxes 1 1331382 4 4 4 0 0 2 0 0 2 0 0.031 0.68 -805 GP1BA glycoprotein Ib (platelet), alpha polypeptide 974961 3 3 3 1 0 0 2 0 1 0 0.032 0.68 -806 NUDT18 nudix (nucleoside diphosphate linked moiety X)-type motif 18 198744 1 1 1 0 0 0 0 0 1 0 0.032 0.68 -807 MINA MYC induced nuclear antigen 727038 3 3 3 0 0 1 1 0 1 0 0.032 0.68 -808 AKR1C2 aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III) 447681 2 2 2 0 0 0 1 0 1 0 0.032 0.68 -809 C6 complement component 6 1456611 4 4 4 0 1 1 0 1 1 0 0.032 0.68 -810 LYPD5 LY6/PLAUR domain containing 5 275301 2 2 2 0 0 1 1 0 0 0 0.032 0.68 -811 C1orf124 chromosome 1 open reading frame 124 773175 3 3 3 1 0 1 0 1 1 0 0.032 0.68 -812 HNF1A HNF1 homeobox A 868998 3 3 3 2 1 1 1 0 0 0 0.032 0.68 -813 SIGMAR1 166296 1 1 1 0 0 1 0 0 0 0 0.032 0.68 -814 CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 2307357 6 6 6 0 1 1 2 0 2 0 0.032 0.68 -815 MT1A metallothionein 1A 100386 1 1 1 0 0 0 1 0 0 0 0.032 0.68 -816 GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 556179 2 2 2 0 0 1 0 0 1 0 0.032 0.68 -817 TREM1 triggering receptor expressed on myeloid cells 1 365547 2 2 2 1 0 2 0 0 0 0 0.032 0.68 -818 FUNDC1 FUN14 domain containing 1 231192 1 1 1 0 0 0 0 0 1 0 0.032 0.68 -819 ATP1A3 ATPase, Na+/K+ transporting, alpha 3 polypeptide 1567137 5 5 5 1 1 4 0 0 0 0 0.032 0.68 -820 SHANK2 SH3 and multiple ankyrin repeat domains 2 1731912 5 5 5 1 3 1 1 0 0 0 0.032 0.68 -821 REG3A regenerating islet-derived 3 alpha 277836 2 2 2 0 1 0 1 0 0 0 0.032 0.68 -822 SLC34A2 solute carrier family 34 (sodium phosphate), member 2 1075347 5 4 5 0 2 1 1 0 1 0 0.032 0.68 -823 ECE2 endothelin converting enzyme 2 1464723 5 5 5 0 1 4 0 0 0 0 0.032 0.68 -824 CRYGC crystallin, gamma C 272259 3 2 3 0 1 1 0 0 1 0 0.032 0.68 -825 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 787371 3 3 3 1 0 1 1 0 1 0 0.032 0.68 -826 SDK2 sidekick homolog 2 (chicken) 1843452 5 5 5 2 1 3 0 0 1 0 0.032 0.68 -827 LPGAT1 lysophosphatidylglycerol acyltransferase 1 578487 2 2 2 0 0 1 0 0 1 0 0.032 0.68 -828 ANXA13 annexin A13 568854 2 2 2 0 0 0 0 1 1 0 0.032 0.68 -829 AP2A1 adaptor-related protein complex 2, alpha 1 subunit 909558 3 3 3 1 0 0 1 1 1 0 0.032 0.68 -830 P2RY13 purinergic receptor P2Y, G-protein coupled, 13 517647 2 2 2 0 0 0 2 0 0 0 0.033 0.68 -831 MGC26647 388362 2 2 2 1 0 0 1 0 1 0 0.033 0.68 -832 POTEA 783315 3 3 3 0 0 2 1 0 0 0 0.033 0.68 -833 SLC31A1 solute carrier family 31 (copper transporters), member 1 298623 2 2 2 0 0 1 0 1 0 0 0.033 0.68 -834 LIMK1 LIM domain kinase 1 834522 3 3 3 0 0 2 1 0 0 0 0.033 0.68 -835 SOX9 SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal) 498381 2 2 2 1 0 0 0 0 2 0 0.033 0.68 -836 JAGN1 jagunal homolog 1 (Drosophila) 236769 1 1 1 0 0 0 0 0 1 0 0.033 0.68 -837 SYCP2 synaptonemal complex protein 2 2415855 6 6 6 1 0 0 2 2 2 0 0.033 0.68 -838 RFX4 regulatory factor X, 4 (influences HLA class II expression) 1222377 4 4 4 0 1 2 0 1 0 0 0.033 0.68 -839 PYCARD PYD and CARD domain containing 235248 1 1 1 0 0 0 0 0 1 0 0.033 0.68 -840 RAD21 RAD21 homolog (S. pombe) 987636 3 3 3 0 0 1 1 0 1 0 0.033 0.69 -841 SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1984905 6 5 6 1 2 1 0 0 1 2 0.033 0.69 -842 RAB25 RAB25, member RAS oncogene family 335634 2 2 2 0 1 1 0 0 0 0 0.034 0.69 -843 BAD BCL2-antagonist of cell death 163254 1 1 1 0 1 0 0 0 0 0 0.034 0.69 -844 TPRX1 tetra-peptide repeat homeobox 1 207363 1 1 1 0 0 0 0 0 1 0 0.034 0.69 -845 SOCS6 suppressor of cytokine signaling 6 817284 3 3 3 0 1 2 0 0 0 0 0.034 0.69 -846 KCNH2 potassium voltage-gated channel, subfamily H (eag-related), member 2 1115400 4 4 4 1 4 0 0 0 0 0 0.034 0.69 -847 ISL1 ISL LIM homeobox 1 538434 2 2 2 0 0 1 0 1 0 0 0.034 0.69 -848 HIST1H2BK histone cluster 1, H2bk 195195 1 1 1 0 0 1 0 0 0 0 0.034 0.69 -849 CNTN4 contactin 4 1606683 5 5 5 1 1 2 1 1 0 0 0.034 0.69 -850 TBL1X transducin (beta)-like 1X-linked 813228 3 3 3 0 0 2 0 0 1 0 0.034 0.69 -851 OCIAD1 OCIA domain containing 1 401544 2 2 2 0 0 0 1 0 1 0 0.034 0.69 -852 FAM117B 591162 2 2 2 0 1 0 0 0 1 0 0.034 0.69 -853 S1PR4 363012 2 2 2 0 0 2 0 0 0 0 0.034 0.69 -854 BEST2 bestrophin 2 628680 3 3 3 0 1 0 1 0 1 0 0.034 0.69 -855 TTC29 tetratricopeptide repeat domain 29 658086 3 3 3 2 2 0 1 0 0 0 0.034 0.69 -856 SMAD2 SMAD family member 2 732108 3 3 3 0 0 0 2 0 1 0 0.034 0.69 -857 MRPS7 mitochondrial ribosomal protein S7 335634 2 2 2 1 0 1 1 0 0 0 0.034 0.69 -858 MYH9 myosin, heavy chain 9, non-muscle 2600403 5 5 5 0 0 0 1 1 3 0 0.035 0.70 -859 BEND4 357942 2 2 2 0 0 1 0 1 0 0 0.035 0.70 -860 FMR1NB fragile X mental retardation 1 neighbor 399516 2 2 2 1 0 1 0 0 1 0 0.035 0.70 -861 CXorf26 chromosome X open reading frame 26 350844 2 2 2 0 1 1 0 0 0 0 0.035 0.70 -862 FAM110A family with sequence similarity 110, member A 118638 1 1 1 0 0 1 0 0 0 0 0.035 0.70 -863 HTR2A 5-hydroxytryptamine (serotonin) receptor 2A 723996 3 3 3 1 0 2 1 0 0 0 0.035 0.70 -864 THNSL2 threonine synthase-like 2 (S. cerevisiae) 637299 3 2 3 0 0 0 0 1 0 2 0.035 0.70 -865 PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 1489566 4 4 4 0 1 1 0 0 2 0 0.035 0.70 -866 PRDM1 PR domain containing 1, with ZNF domain 1253811 4 4 4 1 0 3 1 0 0 0 0.035 0.70 -867 SLC44A5 solute carrier family 44, member 5 1141764 3 3 3 1 0 0 1 1 1 0 0.035 0.70 -868 ADA adenosine deaminase 482664 2 2 2 1 1 0 1 0 0 0 0.035 0.70 -869 RASL11B RAS-like, family 11, member B 312819 2 2 2 0 0 0 2 0 0 0 0.035 0.70 -870 TMC5 transmembrane channel-like 5 1731405 6 5 6 0 1 2 2 0 1 0 0.035 0.70 -871 SAMD1 sterile alpha motif domain containing 1 247416 1 1 1 1 0 0 0 0 1 0 0.035 0.70 -872 RPP30 ribonuclease P/MRP 30kDa subunit 469482 2 2 2 0 0 1 1 0 0 0 0.035 0.70 -873 RAB3C RAB3C, member RAS oncogene family 356928 2 2 2 0 1 0 1 0 0 0 0.036 0.70 -874 GINS2 GINS complex subunit 2 (Psf2 homolog) 245388 1 1 1 0 0 0 0 0 1 0 0.036 0.70 -875 DNASE2 deoxyribonuclease II, lysosomal 533871 2 2 2 0 0 0 1 0 1 0 0.036 0.70 -876 OR1L6 olfactory receptor, family 1, subfamily L, member 6 475566 2 2 2 0 1 1 0 0 0 0 0.036 0.70 -877 COX6C cytochrome c oxidase subunit VIc 119652 1 1 1 0 1 0 0 0 0 0 0.036 0.70 -878 RPS21 ribosomal protein S21 109512 1 1 1 0 0 1 0 0 0 0 0.036 0.70 -879 ENOX1 ecto-NOX disulfide-thiol exchanger 1 1007916 3 3 3 0 0 1 1 0 1 0 0.036 0.70 -880 SLC12A5 solute carrier family 12, (potassium-chloride transporter) member 5 1696929 5 5 5 0 1 3 1 0 0 0 0.036 0.70 -881 AIP aryl hydrocarbon receptor interacting protein 145509 1 1 1 0 0 1 0 0 0 0 0.036 0.70 -882 GPR83 G protein-coupled receptor 83 653016 3 3 3 0 0 2 0 0 1 0 0.036 0.70 -883 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like 1295892 4 4 4 1 0 0 2 2 0 0 0.036 0.70 -884 TPRG1 tumor protein p63 regulated 1 429936 2 2 2 0 0 2 0 0 0 0 0.036 0.70 -885 GRIN2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D 940992 3 3 3 0 1 2 0 0 0 0 0.036 0.70 -886 PARK2 Parkinson disease (autosomal recessive, juvenile) 2, parkin 668226 3 3 3 0 1 1 0 1 0 0 0.036 0.70 -887 ZNF592 zinc finger protein 592 1928628 5 5 5 2 3 1 0 0 1 0 0.036 0.70 -888 OGFOD2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 136890 1 1 1 0 0 0 0 1 0 0 0.036 0.70 -889 GABRA3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 768105 3 3 3 0 0 3 0 0 0 0 0.036 0.70 -890 ZNF160 zinc finger protein 160 1253811 5 4 5 0 0 3 2 0 0 0 0.036 0.70 -891 ALKBH5 alkB, alkylation repair homolog 5 (E. coli) 409149 2 2 2 0 0 1 0 1 0 0 0.036 0.70 -892 ALPP alkaline phosphatase, placental (Regan isozyme) 593697 2 2 2 1 0 0 0 1 1 0 0.036 0.70 -893 OTP orthopedia homeobox 162240 1 1 1 0 0 1 0 0 0 0 0.036 0.70 -894 CRYBG3 1594515 5 5 5 0 1 1 2 1 0 0 0.036 0.70 -895 HPCAL1 hippocalcin-like 1 192660 1 1 1 0 0 1 0 0 0 0 0.036 0.70 -896 SFRS17A splicing factor, arginine/serine-rich 17A 719433 3 3 3 1 1 1 0 1 0 0 0.037 0.70 -897 FAM131C family with sequence similarity 131, member C 205842 1 1 1 0 0 1 0 0 0 0 0.037 0.70 -898 RMND1 required for meiotic nuclear division 1 homolog (S. cerevisiae) 706758 2 2 2 1 0 0 1 0 1 0 0.037 0.70 -899 XPO7 exportin 7 1595022 5 5 5 0 0 3 1 0 1 0 0.037 0.70 -900 ZIC4 Zic family member 4 524745 2 2 2 2 1 0 0 1 0 0 0.037 0.70 -901 CSAG1 chondrosarcoma associated gene 1 126243 1 1 1 0 0 0 1 0 0 0 0.037 0.70 -902 ZNF501 zinc finger protein 501 415740 2 2 2 0 1 0 0 0 1 0 0.037 0.70 -903 TMEM59L transmembrane protein 59-like 254514 2 2 2 0 0 2 0 0 0 0 0.037 0.70 -904 BLCAP bladder cancer associated protein 127764 1 1 1 0 0 0 1 0 0 0 0.037 0.70 -905 SH2D2A SH2 domain protein 2A 533364 2 2 2 0 0 1 0 1 0 0 0.037 0.70 -906 IL33 interleukin 33 426387 2 2 2 0 1 0 1 0 0 0 0.037 0.70 -907 ZNF131 zinc finger protein 131 911586 3 3 3 0 0 0 1 2 0 0 0.037 0.70 -908 NTRK3 neurotrophic tyrosine kinase, receptor, type 3 1423656 4 4 4 0 0 1 0 2 1 0 0.037 0.70 -909 LRRN1 leucine rich repeat neuronal 1 1092585 4 4 4 0 0 0 4 0 0 0 0.037 0.70 -910 FUK fucokinase 637806 2 2 2 1 0 0 0 1 1 0 0.037 0.70 -911 TRAF3IP3 TRAF3 interacting protein 3 870012 3 3 3 2 0 1 1 1 0 0 0.037 0.70 -912 KIAA1462 KIAA1462 2074644 5 5 5 0 1 2 2 0 0 0 0.037 0.70 -913 C14orf21 chromosome 14 open reading frame 21 947076 3 3 2 2 0 0 0 1 2 0 0.037 0.70 -914 TUBB2C tubulin, beta 2C 392418 2 2 2 0 0 2 0 0 0 0 0.037 0.70 -915 POLR3GL polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 346788 2 2 2 0 0 1 1 0 0 0 0.037 0.70 -916 CD1C CD1c molecule 520182 2 2 2 0 0 2 0 0 0 0 0.037 0.70 -917 RPL29 ribosomal protein L29 249444 1 1 1 0 0 0 0 0 1 0 0.038 0.71 -918 PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) 250965 1 1 1 0 0 0 0 0 1 0 0.038 0.71 -919 KRT36 keratin 36 624624 2 2 2 0 0 1 0 0 1 0 0.038 0.71 -920 TH1L TH1-like (Drosophila) 883194 3 3 3 0 1 1 1 0 0 0 0.038 0.71 -921 BMP4 bone morphogenetic protein 4 626145 2 2 2 0 0 1 0 0 1 0 0.038 0.71 -922 CBLN1 cerebellin 1 precursor 232206 1 1 1 0 0 0 0 0 1 0 0.038 0.71 -923 CAPRIN1 cell cycle associated protein 1 1015014 3 3 3 0 0 0 1 1 1 0 0.038 0.71 -924 ZNF492 zinc finger protein 492 815256 3 3 3 1 0 1 0 0 2 0 0.038 0.71 -925 RARRES1 retinoic acid receptor responder (tazarotene induced) 1 326508 2 2 2 0 0 0 1 0 1 0 0.038 0.71 -926 FBXO25 F-box protein 25 572910 2 2 2 0 0 1 0 1 0 0 0.038 0.71 -927 FAM47B family with sequence similarity 47, member B 984594 3 3 3 1 0 2 1 0 0 0 0.038 0.71 -928 OR10K1 olfactory receptor, family 10, subfamily K, member 1 479622 2 2 2 0 1 1 0 0 0 0 0.038 0.71 -929 TMEM201 transmembrane protein 201 436527 2 2 2 0 0 0 0 0 2 0 0.038 0.71 -930 EVPL envoplakin 2367690 6 6 6 0 0 2 3 1 0 0 0.038 0.71 -931 DUSP16 dual specificity phosphatase 16 1025154 3 3 3 0 0 0 0 0 3 0 0.038 0.71 -932 NEK10 NIMA (never in mitosis gene a)- related kinase 10 1088022 4 4 4 1 0 0 3 0 1 0 0.038 0.71 -933 TMEM64 transmembrane protein 64 232713 1 1 1 0 0 0 0 0 1 0 0.038 0.71 -934 FAM167A 299130 2 2 2 0 1 1 0 0 0 0 0.038 0.71 -935 CPA1 carboxypeptidase A1 (pancreatic) 658593 3 3 3 0 1 0 2 0 0 0 0.038 0.71 -936 C9orf25 chromosome 9 open reading frame 25 245388 1 1 1 0 0 0 0 1 0 0 0.038 0.71 -937 FCHO1 FCH domain only 1 1250769 3 3 3 1 0 0 1 0 2 0 0.039 0.71 -938 TSC22D3 TSC22 domain family, member 3 370110 2 2 2 2 0 1 1 0 0 0 0.039 0.71 -939 CXCR1 535899 2 2 2 0 1 0 0 1 0 0 0.039 0.71 -940 DHRS13 dehydrogenase/reductase (SDR family) member 13 343239 2 2 2 0 0 1 1 0 0 0 0.039 0.71 -941 SLC25A18 solute carrier family 25 (mitochondrial carrier), member 18 374166 2 2 2 1 0 1 1 0 0 0 0.039 0.71 -942 VGLL3 vestigial like 3 (Drosophila) 439569 2 2 2 0 1 1 0 0 0 0 0.039 0.71 -943 FARSB phenylalanyl-tRNA synthetase, beta subunit 900432 3 3 3 0 1 1 1 0 0 0 0.039 0.71 -944 OR5R1 olfactory receptor, family 5, subfamily R, member 1 496353 2 2 2 0 1 1 0 0 0 0 0.039 0.71 -945 KIAA0319 KIAA0319 1672593 4 4 4 0 0 0 1 2 1 0 0.039 0.71 -946 SPINK2 serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 107484 1 1 1 0 0 0 0 1 0 0 0.039 0.71 -947 CLIC5 chloride intracellular channel 5 361491 2 2 2 0 1 0 0 0 1 0 0.039 0.71 -948 C15orf39 chromosome 15 open reading frame 39 1203111 4 4 4 1 2 1 1 0 0 0 0.039 0.72 -949 TMEM72 392418 2 2 2 0 0 1 0 0 1 0 0.039 0.72 -950 SPEG SPEG complex locus 3219450 7 7 6 2 2 3 0 0 2 0 0.040 0.72 -951 CELA2B 426894 2 2 2 1 1 1 0 0 0 0 0.040 0.72 -952 GMDS GDP-mannose 4,6-dehydratase 521196 2 2 2 0 0 0 2 0 0 0 0.040 0.72 -953 CHRNB1 cholinergic receptor, nicotinic, beta 1 (muscle) 623610 2 2 1 1 0 0 2 0 0 0 0.040 0.72 -954 ILF2 interleukin enhancer binding factor 2, 45kDa 623103 2 2 2 0 0 0 0 1 1 0 0.040 0.72 -955 CD2 CD2 molecule 545532 2 2 2 0 0 0 1 0 1 0 0.040 0.72 -956 EPHA5 EPH receptor A5 1521507 5 5 5 0 2 3 0 0 0 0 0.040 0.72 -957 FXR1 fragile X mental retardation, autosomal homolog 1 980538 3 3 3 0 0 1 1 0 1 0 0.040 0.72 -958 KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 354393 2 2 2 0 0 2 0 0 0 0 0.040 0.72 -959 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1696422 5 5 5 0 2 2 1 0 0 0 0.040 0.73 -960 GPR101 G protein-coupled receptor 101 776217 3 3 3 0 0 2 0 1 0 0 0.040 0.73 -961 C1orf183 chromosome 1 open reading frame 183 460863 2 2 2 0 0 2 0 0 0 0 0.040 0.73 -962 IL1RN interleukin 1 receptor antagonist 319917 2 2 2 0 1 1 0 0 0 0 0.040 0.73 -963 PTBP1 polypyrimidine tract binding protein 1 459342 2 2 2 1 0 0 2 0 0 0 0.041 0.73 -964 CRAT carnitine acetyltransferase 716391 3 3 3 0 0 1 0 1 1 0 0.041 0.73 -965 MLYCD malonyl-CoA decarboxylase 481143 2 2 2 0 0 1 0 0 1 0 0.041 0.73 -966 PRMT6 protein arginine methyltransferase 6 476580 2 2 2 0 0 1 1 0 0 0 0.041 0.73 -967 NUPL2 nucleoporin like 2 613470 2 2 2 0 0 0 0 1 1 0 0.041 0.73 -968 IGSF1 immunoglobulin superfamily, member 1 2111148 5 5 5 1 0 1 2 0 2 0 0.041 0.73 -969 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 220545 1 1 1 0 0 0 0 0 1 0 0.041 0.73 -970 NOL3 nucleolar protein 3 (apoptosis repressor with CARD domain) 266175 1 1 1 0 0 0 1 0 0 0 0.041 0.73 -971 PIWIL2 piwi-like 2 (Drosophila) 1525056 4 4 4 0 0 2 0 0 2 0 0.041 0.73 -972 FATE1 fetal and adult testis expressed 1 234234 1 1 1 0 0 0 1 0 0 0 0.041 0.73 -973 ZNF296 570882 2 2 2 0 0 1 0 0 1 0 0.041 0.73 -974 PNPO pyridoxamine 5'-phosphate oxidase 340704 2 2 2 0 0 1 0 0 1 0 0.041 0.73 -975 ERP29 endoplasmic reticulum protein 29 345267 2 2 2 0 1 1 0 0 0 0 0.041 0.73 -976 GRK4 G protein-coupled receptor kinase 4 878124 3 3 3 1 1 1 1 0 0 0 0.041 0.73 -977 GPRASP2 G protein-coupled receptor associated sorting protein 2 1278147 4 4 4 0 1 3 0 0 0 0 0.041 0.73 -978 INA internexin neuronal intermediate filament protein, alpha 244374 1 1 1 0 0 0 0 0 1 0 0.041 0.73 -979 C1orf163 chromosome 1 open reading frame 163 358956 2 2 2 0 1 0 1 0 0 0 0.041 0.73 -980 CASC5 cancer susceptibility candidate 5 3555591 7 7 7 0 1 1 4 0 1 0 0.041 0.73 -981 BRP44L brain protein 44-like 136890 1 1 1 0 0 1 0 0 0 0 0.041 0.73 -982 TMEM120B transmembrane protein 120B 419289 2 2 2 0 1 0 0 0 1 0 0.041 0.73 -983 HSD17B13 hydroxysteroid (17-beta) dehydrogenase 13 472017 2 2 2 0 1 0 0 0 1 0 0.042 0.73 -984 RASAL3 742248 3 3 3 1 0 3 0 0 0 0 0.042 0.73 -985 SNX5 sorting nexin 5 614484 2 2 2 0 0 0 0 0 2 0 0.042 0.73 -986 ELAVL1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) 475059 2 2 2 0 1 1 0 0 0 0 0.042 0.73 -987 CALHM2 496860 2 2 2 0 0 2 0 0 0 0 0.042 0.73 -988 SYNC 321438 2 2 2 0 0 0 1 1 0 0 0.042 0.73 -989 ARID3C AT rich interactive domain 3C (BRIGHT-like) 403572 2 2 2 0 0 1 1 0 0 0 0.042 0.73 -990 ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase 922740 3 3 3 0 1 0 0 0 2 0 0.042 0.73 -991 SLAMF7 SLAM family member 7 525252 2 2 2 0 0 0 1 1 0 0 0.042 0.73 -992 TIRAP toll-interleukin 1 receptor (TIR) domain containing adaptor protein 372645 2 2 2 1 1 1 0 0 0 0 0.042 0.73 -993 RFX1 regulatory factor X, 1 (influences HLA class II expression) 526773 2 2 2 0 0 0 1 1 0 0 0.042 0.73 -994 PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 1387152 4 4 4 0 2 0 1 0 1 0 0.042 0.73 -995 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 969384 3 3 3 0 0 0 1 1 1 0 0.042 0.73 -996 TOX4 TOX high mobility group box family member 4 964314 3 3 3 0 0 2 0 0 1 0 0.042 0.73 -997 PDE2A phosphodiesterase 2A, cGMP-stimulated 1089543 3 3 3 1 0 0 2 0 1 0 0.042 0.73 -998 EFCAB2 EF-hand calcium binding domain 2 247416 1 1 1 0 0 1 0 0 0 0 0.042 0.73 -999 HOXC12 homeobox C12 238797 1 1 1 0 0 0 0 0 1 0 0.042 0.73 -1000 SLC10A3 solute carrier family 10 (sodium/bile acid cotransporter family), member 3 609921 3 2 3 0 0 1 0 0 0 2 0.042 0.73 -1001 FAM86B1 family with sequence similarity 86, member B1 155142 1 1 1 0 0 1 0 0 0 0 0.042 0.73 -1002 LANCL2 LanC lantibiotic synthetase component C-like 2 (bacterial) 598767 2 2 2 0 0 1 0 1 0 0 0.042 0.73 -1003 GALR1 galanin receptor 1 397488 2 2 2 2 0 1 1 0 0 0 0.042 0.73 -1004 CORO1C coronin, actin binding protein, 1C 742755 3 3 3 0 0 1 0 2 0 0 0.043 0.73 -1005 HOXA4 homeobox A4 188604 1 1 1 0 0 0 0 0 1 0 0.043 0.73 -1006 IRX4 iroquois homeobox 4 229164 1 1 1 0 0 0 0 0 1 0 0.043 0.73 -1007 PGR progesterone receptor 624624 2 2 2 0 0 1 0 0 1 0 0.043 0.73 -1008 CHRNB2 cholinergic receptor, nicotinic, beta 2 (neuronal) 597246 2 2 2 1 0 1 0 0 1 0 0.043 0.73 -1009 RHOA ras homolog gene family, member A 303186 2 2 2 0 1 0 1 0 0 0 0.043 0.73 -1010 C12orf39 chromosome 12 open reading frame 39 156156 1 1 1 0 0 0 1 0 0 0 0.043 0.73 -1011 LOC55908 217503 1 1 1 0 0 0 0 0 1 0 0.043 0.73 -1012 C3orf34 chromosome 3 open reading frame 34 259584 1 1 1 0 0 0 0 0 1 0 0.043 0.73 -1013 USP42 ubiquitin specific peptidase 42 1411995 4 4 4 1 1 1 1 1 0 0 0.043 0.73 -1014 CNOT3 CCR4-NOT transcription complex, subunit 3 1107795 3 3 3 0 0 0 0 2 1 0 0.043 0.73 -1015 SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa 483678 2 2 2 0 0 1 1 0 0 0 0.043 0.73 -1016 TEX15 testis expressed 15 4251702 11 9 11 3 3 2 4 1 1 0 0.043 0.73 -1017 CEP164 centrosomal protein 164kDa 2184663 4 4 2 1 0 0 0 1 3 0 0.043 0.73 -1018 CCL7 chemokine (C-C motif) ligand 7 158184 1 1 1 0 0 0 1 0 0 0 0.043 0.73 -1019 ATM ataxia telangiectasia mutated 4775433 9 8 9 1 0 4 0 1 4 0 0.043 0.73 -1020 C20orf79 chromosome 20 open reading frame 79 240825 1 1 1 0 0 0 1 0 0 0 0.043 0.73 -1021 CDCA7L cell division cycle associated 7-like 698139 3 3 3 0 2 1 0 0 0 0 0.044 0.73 -1022 HDGFRP2 286455 2 2 2 1 1 0 0 0 1 0 0.044 0.73 -1023 CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) 2688114 5 5 5 0 0 0 2 0 3 0 0.044 0.73 -1024 CD226 CD226 molecule 392925 2 2 2 0 1 0 1 0 0 0 0.044 0.73 -1025 RBM26 RNA binding motif protein 26 1534689 4 4 4 0 0 1 0 2 1 0 0.044 0.73 -1026 ANO5 1422135 4 4 4 0 1 2 0 0 1 0 0.044 0.73 -1027 C9orf91 chromosome 9 open reading frame 91 537420 2 2 2 0 0 0 1 0 1 0 0.044 0.73 -1028 MCOLN1 mucolipin 1 759486 3 3 3 1 1 1 1 0 0 0 0.044 0.73 -1029 STK31 serine/threonine kinase 31 1600092 5 5 5 0 2 1 1 0 1 0 0.044 0.73 -1030 ARMCX1 armadillo repeat containing, X-linked 1 692562 3 2 3 0 1 0 0 0 0 2 0.044 0.73 -1031 MAGEA12 melanoma antigen family A, 12 481143 2 2 2 0 0 1 0 0 1 0 0.044 0.73 -1032 KLK15 kallikrein-related peptidase 15 377208 2 2 2 0 0 2 0 0 0 0 0.044 0.73 -1033 CBX8 chromobox homolog 8 (Pc class homolog, Drosophila) 454779 3 2 3 0 1 2 0 0 0 0 0.044 0.73 -1034 CNTNAP4 contactin associated protein-like 4 1970709 5 5 5 0 1 2 2 0 0 0 0.044 0.73 -1035 MEX3C mex-3 homolog C (C. elegans) 623610 2 2 2 1 0 1 1 0 0 0 0.044 0.73 -1036 SSX3 synovial sarcoma, X breakpoint 3 325494 2 2 2 0 1 0 1 0 0 0 0.044 0.73 -1037 FAM111A family with sequence similarity 111, member A 934908 3 3 3 1 1 0 0 0 2 0 0.044 0.73 -1038 POLR1C polymerase (RNA) I polypeptide C, 30kDa 602316 2 2 2 0 0 0 1 0 1 0 0.044 0.73 -1039 MAST1 microtubule associated serine/threonine kinase 1 2161848 5 5 5 2 0 4 0 0 1 0 0.044 0.73 -1040 STXBP2 syntaxin binding protein 2 616005 2 2 2 1 0 1 0 1 0 0 0.044 0.73 -1041 RHO rhodopsin 540969 2 2 2 0 0 0 0 0 2 0 0.044 0.73 -1042 RLF rearranged L-myc fusion 2861508 7 7 7 0 2 2 2 0 1 0 0.044 0.73 -1043 FAM90A1 family with sequence similarity 90, member A1 675324 2 2 2 0 1 0 0 0 1 0 0.045 0.73 -1044 KCNK9 potassium channel, subfamily K, member 9 507000 2 2 2 0 0 1 0 0 1 0 0.045 0.73 -1045 MOGAT3 monoacylglycerol O-acyltransferase 3 521196 2 2 2 0 0 1 1 0 0 0 0.045 0.73 -1046 CCNG2 cyclin G2 538941 2 2 2 1 0 1 0 0 1 0 0.045 0.73 -1047 ZNF486 zinc finger protein 486 713856 2 2 2 2 0 0 1 0 1 0 0.045 0.73 -1048 FHIT fragile histidine triad gene 235248 1 1 1 0 0 0 1 0 0 0 0.045 0.73 -1049 ZNF620 zinc finger protein 620 651495 2 2 2 0 0 0 0 0 2 0 0.045 0.73 -1050 TMTC4 transmembrane and tetratricopeptide repeat containing 4 1193985 4 4 4 0 3 0 1 0 0 0 0.045 0.73 -1051 AMMECR1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region, gene 1 278343 1 1 1 0 0 0 0 0 1 0 0.045 0.73 -1052 CUL7 cullin 7 2677974 7 6 7 0 0 3 1 0 1 2 0.045 0.73 -1053 COX10 COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast) 662142 2 2 2 0 0 0 0 0 2 0 0.045 0.73 -1054 ZNF512 zinc finger protein 512 892320 2 2 2 0 0 0 0 0 2 0 0.045 0.73 -1055 ERN2 endoplasmic reticulum to nucleus signaling 2 1308567 4 4 4 1 1 3 0 0 0 0 0.045 0.73 -1056 MRPL18 mitochondrial ribosomal protein L18 282906 2 2 2 0 0 2 0 0 0 0 0.045 0.73 -1057 SP3 Sp3 transcription factor 1056081 3 3 3 0 0 0 1 0 2 0 0.045 0.73 -1058 FCRL5 Fc receptor-like 5 1460667 4 4 4 1 2 2 0 0 0 0 0.045 0.73 -1059 ATPIF1 ATPase inhibitory factor 1 173394 1 1 1 0 0 0 0 0 1 0 0.045 0.73 -1060 KCNJ6 potassium inwardly-rectifying channel, subfamily J, member 6 650988 2 2 2 1 0 1 0 1 0 0 0.045 0.73 -1061 RIC8A resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) 772668 3 3 3 0 0 1 0 0 2 0 0.045 0.73 -1062 TPM1 tropomyosin 1 (alpha) 541983 2 2 2 0 0 0 1 0 1 0 0.045 0.73 -1063 TTC24 tetratricopeptide repeat domain 24 527787 2 2 2 0 0 0 1 0 1 0 0.045 0.73 -1064 RAD9A RAD9 homolog A (S. pombe) 488748 2 2 2 0 0 0 0 0 2 0 0.045 0.73 -1065 C1orf192 chromosome 1 open reading frame 192 280878 1 1 1 0 0 0 0 0 1 0 0.045 0.73 -1066 GPHB5 glycoprotein hormone beta 5 143988 1 1 1 0 0 0 1 0 0 0 0.045 0.73 -1067 WWC3 WWC family member 3 1528098 4 4 4 0 1 0 0 0 3 0 0.045 0.74 -1068 DFNA5 deafness, autosomal dominant 5 774189 3 3 3 0 0 0 1 0 2 0 0.046 0.74 -1069 ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 1584882 4 4 4 0 0 2 1 0 1 0 0.046 0.74 -1070 FAM179A 1308060 4 4 4 0 1 1 0 2 0 0 0.046 0.74 -1071 ACACB acetyl-Coenzyme A carboxylase beta 3696030 8 8 8 0 3 5 0 0 0 0 0.046 0.74 -1072 KLRK1 killer cell lectin-like receptor subfamily K, member 1 344253 2 2 2 0 0 0 2 0 0 0 0.046 0.74 -1073 CCDC115 coiled-coil domain containing 115 283413 1 1 1 0 0 0 0 0 1 0 0.046 0.74 -1074 AQP10 aquaporin 10 471003 2 2 2 0 0 1 1 0 0 0 0.046 0.74 -1075 PTCHD1 patched domain containing 1 1285752 3 3 3 2 0 2 0 0 1 0 0.046 0.74 -1076 FAM107A family with sequence similarity 107, member A 226629 1 1 1 0 0 0 1 0 0 0 0.046 0.74 -1077 SUZ12 suppressor of zeste 12 homolog (Drosophila) 1017042 3 3 3 0 0 1 1 0 1 0 0.046 0.74 -1078 OR7D4 olfactory receptor, family 7, subfamily D, member 4 478101 2 2 2 0 0 1 0 0 1 0 0.046 0.74 -1079 EPB41L1 erythrocyte membrane protein band 4.1-like 1 1377519 4 4 4 0 1 1 0 1 1 0 0.046 0.74 -1080 ABAT 4-aminobutyrate aminotransferase 778245 3 3 3 1 0 2 1 0 0 0 0.046 0.74 -1081 TRIM56 tripartite motif-containing 56 833001 3 3 3 1 0 2 1 0 0 0 0.046 0.74 -1082 TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 252486 1 1 1 0 0 0 1 0 0 0 0.047 0.74 -1083 ZIM3 zinc finger, imprinted 3 727545 3 3 3 0 0 1 1 1 0 0 0.047 0.74 -1084 STRA8 stimulated by retinoic acid gene 8 homolog (mouse) 374673 2 2 2 0 0 1 0 0 1 0 0.047 0.74 -1085 DEFB129 defensin, beta 129 283920 1 1 1 0 0 0 0 0 1 0 0.047 0.74 -1086 SFTPC surfactant, pulmonary-associated protein C 290511 1 1 1 0 0 0 0 0 1 0 0.047 0.74 -1087 WHSC2 Wolf-Hirschhorn syndrome candidate 2 290004 1 1 1 0 0 0 0 0 1 0 0.047 0.74 -1088 NUDT1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 229671 1 1 1 0 0 1 0 0 0 0 0.047 0.74 -1089 LCE2A late cornified envelope 2A 164775 1 1 1 0 0 0 0 0 1 0 0.047 0.74 -1090 CLNK 553644 2 2 2 0 1 0 1 0 0 0 0.047 0.74 -1091 TGIF2 TGFB-induced factor homeobox 2 366054 2 2 2 0 1 1 0 0 0 0 0.047 0.74 -1092 DNAJC11 DnaJ (Hsp40) homolog, subfamily C, member 11 845676 3 3 3 0 0 0 2 0 1 0 0.047 0.75 -1093 C20orf177 chromosome 20 open reading frame 177 586092 2 2 2 1 2 0 0 0 0 0 0.047 0.75 -1094 IFLTD1 intermediate filament tail domain containing 1 607893 2 2 2 0 0 0 1 1 0 0 0.047 0.75 -1095 CENPE centromere protein E, 312kDa 4171089 9 9 9 0 1 3 4 0 1 0 0.047 0.75 -1096 DCC deleted in colorectal carcinoma 2261220 6 6 6 2 3 2 0 0 1 0 0.048 0.75 -1097 CHST5 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 442611 2 2 1 0 2 0 0 0 0 0 0.048 0.75 -1098 MYOM3 myomesin family, member 3 1888575 5 5 5 1 3 1 0 1 0 0 0.048 0.75 -1099 FAM98A family with sequence similarity 98, member A 805623 3 3 3 0 0 0 2 0 1 0 0.048 0.75 -1100 RNF41 ring finger protein 41 493818 2 2 2 0 2 0 0 0 0 0 0.048 0.75 -1101 RBPJL recombination signal binding protein for immunoglobulin kappa J region-like 735657 3 3 3 0 1 1 1 0 0 0 0.048 0.75 -1102 SIAH1 seven in absentia homolog 1 (Drosophila) 481650 2 2 2 0 0 0 0 1 1 0 0.048 0.75 -1103 COASY Coenzyme A synthase 869505 3 3 3 0 1 0 1 0 1 0 0.048 0.75 -1104 ESR1 estrogen receptor 1 712842 2 2 2 0 1 0 0 0 1 0 0.048 0.75 -1105 STXBP5 syntaxin binding protein 5 (tomosyn) 1672086 5 5 5 1 3 0 1 1 0 0 0.048 0.75 -1106 DSG1 desmoglein 1 574938 2 2 2 0 0 0 2 0 0 0 0.048 0.75 -1107 EDN1 endothelin 1 334113 2 2 2 1 2 0 0 0 0 0 0.048 0.75 -1108 PTPRD protein tyrosine phosphatase, receptor type, D 2957331 7 7 7 1 0 3 3 0 1 0 0.048 0.75 -1109 DSG4 desmoglein 4 517647 2 2 2 0 1 0 0 0 1 0 0.048 0.75 -1110 KRTAP13-4 keratin associated protein 13-4 246909 1 1 1 0 0 0 0 1 0 0 0.048 0.75 -1111 RAB43 RAB43, member RAS oncogene family 260598 1 1 1 0 0 0 0 1 0 0 0.048 0.75 -1112 UFC1 ubiquitin-fold modifier conjugating enzyme 1 267696 1 1 1 0 0 0 0 1 0 0 0.048 0.75 -1113 GRB7 growth factor receptor-bound protein 7 754416 3 3 3 0 2 1 0 0 0 0 0.048 0.75 -1114 THEM5 thioesterase superfamily member 5 389376 2 2 2 0 0 0 2 0 0 0 0.048 0.75 -1115 ARSB arylsulfatase B 684957 3 3 3 0 2 1 0 0 0 0 0.048 0.75 -1116 PAX8 paired box 8 599781 2 2 2 0 1 0 0 0 1 0 0.048 0.75 -1117 FAM26D family with sequence similarity 26, member D 198237 1 1 1 0 0 0 1 0 0 0 0.048 0.75 -1118 OXCT2 3-oxoacid CoA transferase 2 248430 1 1 1 0 0 1 0 0 0 0 0.048 0.75 -1119 PLEC 2989272 9 7 7 6 2 1 2 4 0 0 0.048 0.75 -1120 SPANXC SPANX family, member C 153114 1 1 1 0 1 0 0 0 0 0 0.048 0.75 -1121 HEATR3 HEAT repeat containing 3 833001 2 2 2 0 0 0 0 0 2 0 0.049 0.75 -1122 POLI polymerase (DNA directed) iota 1046955 3 3 3 0 0 1 1 1 0 0 0.049 0.75 -1123 LMO4 LIM domain only 4 260091 1 1 1 0 0 1 0 0 0 0 0.049 0.75 -1124 MBD1 methyl-CpG binding domain protein 1 1010958 3 3 3 1 1 1 1 0 0 0 0.049 0.75 -1125 UGT2B15 UDP glucuronosyltransferase 2 family, polypeptide B15 503958 2 2 2 0 1 0 0 0 1 0 0.049 0.75 -1126 HAPLN2 hyaluronan and proteoglycan link protein 2 276822 1 1 1 0 0 0 0 0 1 0 0.049 0.75 -1127 FAM174B 73008 1 1 1 0 0 1 0 0 0 0 0.049 0.75 -1128 ZNF576 zinc finger protein 576 264147 1 1 1 0 0 0 1 0 0 0 0.049 0.75 -1129 DEAF1 deformed epidermal autoregulatory factor 1 (Drosophila) 617526 2 2 2 1 0 1 0 0 1 0 0.049 0.75 -1130 GREM1 gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis) 283413 1 1 1 0 0 0 1 0 0 0 0.049 0.75 -1131 PDE4D phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) 1062165 3 3 3 0 0 1 2 0 0 0 0.049 0.75 -1132 CHD6 chromodomain helicase DNA binding protein 6 4203537 7 7 7 2 1 0 2 1 3 0 0.049 0.75 -1133 OXGR1 oxoglutarate (alpha-ketoglutarate) receptor 1 516126 2 2 2 1 0 0 0 1 1 0 0.049 0.75 -1134 MMP3 matrix metallopeptidase 3 (stromelysin 1, progelatinase) 747318 3 3 3 1 1 0 2 0 0 0 0.049 0.75 -1135 C6orf129 chromosome 6 open reading frame 129 157170 1 1 1 0 0 0 1 0 0 0 0.049 0.75 -1136 HIST1H1B histone cluster 1, H1b 347295 2 2 2 1 1 0 0 1 0 0 0.049 0.75 -1137 GJA1 gap junction protein, alpha 1, 43kDa 584571 2 2 2 0 0 0 2 0 0 0 0.049 0.75 -1138 EWSR1 Ewing sarcoma breakpoint region 1 1084473 3 3 3 0 0 1 0 0 2 0 0.050 0.75 -1139 GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A 1529112 4 4 4 2 0 3 0 1 0 0 0.050 0.75 -1140 SCN8A sodium channel, voltage gated, type VIII, alpha subunit 3046563 7 7 7 0 2 1 3 1 0 0 0.050 0.75 -1141 KRT1 keratin 1 (epidermolytic hyperkeratosis) 987636 3 3 3 0 1 2 0 0 0 0 0.050 0.75 -1142 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 480129 2 2 2 1 0 0 2 0 0 0 0.050 0.75 -1143 CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 523731 2 2 2 0 0 1 1 0 0 0 0.050 0.75 -1144 TBPL2 TATA box binding protein like 2 558714 2 2 1 0 0 0 2 0 0 0 0.050 0.75 -1145 GALNT7 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) 959244 2 2 2 1 0 0 0 0 2 0 0.050 0.75 -1146 VKORC1 vitamin K epoxide reductase complex, subunit 1 178464 1 1 1 0 0 1 0 0 0 0 0.050 0.75 -1147 CACNA1E calcium channel, voltage-dependent, R type, alpha 1E subunit 3302598 8 8 8 1 3 2 2 0 1 0 0.050 0.75 -1148 ZNF688 zinc finger protein 688 240318 1 1 1 0 0 0 1 0 0 0 0.050 0.75 -1149 FAM57B family with sequence similarity 57, member B 199758 1 1 1 0 0 1 0 0 0 0 0.050 0.75 -1150 UCP2 uncoupling protein 2 (mitochondrial, proton carrier) 474045 2 2 2 0 1 0 0 0 1 0 0.050 0.75 -1151 DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 185055 1 1 1 0 0 0 0 1 0 0 0.050 0.75 -1152 SCOC short coiled-coil protein 195195 1 1 1 0 0 0 1 0 0 0 0.050 0.75 -1153 ACY1 aminoacylase 1 615498 2 2 2 0 0 0 1 0 1 0 0.050 0.75 -1154 ANKRD28 ankyrin repeat domain 28 1622400 4 4 4 0 1 0 1 1 1 0 0.050 0.75 -1155 FIGN fidgetin 1160016 4 4 4 0 2 0 2 0 0 0 0.050 0.75 -1156 RIMBP2 RIMS binding protein 2 1360788 4 4 4 6 2 1 1 0 0 0 0.050 0.75 -1157 CD38 CD38 molecule 474045 2 2 2 0 0 1 1 0 0 0 0.050 0.75 -1158 CLEC4G C-type lectin superfamily 4, member G 269217 1 1 1 0 0 0 1 0 0 0 0.050 0.75 -1159 C4orf36 chromosome 4 open reading frame 36 185562 1 1 1 0 0 0 1 0 0 0 0.050 0.75 -1160 NNT nicotinamide nucleotide transhydrogenase 1695915 4 4 4 0 0 0 3 1 0 0 0.050 0.75 -1161 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) 733629 3 3 3 0 0 2 0 1 0 0 0.051 0.75 -1162 IQCB1 IQ motif containing B1 937443 3 3 3 0 1 0 1 1 0 0 0.051 0.75 -1163 CDK19 787878 3 3 3 0 1 1 1 0 0 0 0.051 0.75 -1164 KIAA0495 182520 1 1 1 1 1 0 0 0 0 0 0.051 0.75 -1165 SLMO2 slowmo homolog 2 (Drosophila) 290004 1 1 1 0 0 0 0 1 0 0 0.051 0.75 -1166 MMP15 matrix metallopeptidase 15 (membrane-inserted) 539448 2 2 2 1 1 1 0 0 0 0 0.051 0.75 -1167 AP2M1 adaptor-related protein complex 2, mu 1 subunit 680901 2 2 2 0 0 0 0 0 2 0 0.051 0.75 -1168 ZEB2 zinc finger E-box binding homeobox 2 1866267 5 5 5 0 2 2 1 0 0 0 0.051 0.75 -1169 PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2 353379 2 2 2 0 1 0 1 0 0 0 0.051 0.75 -1170 SRD5A1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 255021 1 1 1 0 0 0 1 0 0 0 0.051 0.75 -1171 CMIP 442611 2 2 2 0 0 1 0 0 1 0 0.051 0.75 -1172 RHEBL1 Ras homolog enriched in brain like 1 296088 1 1 1 0 0 0 0 0 1 0 0.051 0.75 -1173 RPP38 ribonuclease P/MRP 38kDa subunit 433992 2 2 2 0 0 1 1 0 0 0 0.051 0.75 -1174 MYST1 MYST histone acetyltransferase 1 627666 2 2 2 0 0 1 1 0 0 0 0.051 0.75 -1175 C9orf170 160719 1 1 1 0 0 1 0 0 0 0 0.051 0.75 -1176 BRCC3 BRCA1/BRCA2-containing complex, subunit 3 409656 2 2 2 1 1 1 0 0 0 0 0.051 0.75 -1177 OR6C70 olfactory receptor, family 6, subfamily C, member 70 478101 2 2 2 0 0 1 1 0 0 0 0.051 0.75 -1178 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 459849 2 2 2 0 0 1 0 0 1 0 0.051 0.75 -1179 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 259077 1 1 1 1 0 0 0 1 0 0 0.051 0.75 -1180 PM20D2 peptidase M20 domain containing 2 441090 2 2 2 0 0 0 1 1 0 0 0.051 0.75 -1181 ANKRD24 ankyrin repeat domain 24 816777 3 3 3 2 1 1 0 0 1 0 0.051 0.75 -1182 B9D2 B9 protein domain 2 273780 1 1 1 0 0 0 1 0 0 0 0.052 0.75 -1183 KIAA2022 KIAA2022 2313441 6 6 6 0 2 2 0 1 1 0 0.052 0.75 -1184 PXMP4 peroxisomal membrane protein 4, 24kDa 310284 2 2 2 0 1 0 0 1 0 0 0.052 0.75 -1185 PI3 peptidase inhibitor 3, skin-derived (SKALP) 183534 1 1 1 0 0 1 0 0 0 0 0.052 0.75 -1186 EDDM3A 227136 1 1 1 0 1 0 0 0 0 0 0.052 0.75 -1187 SP7 Sp7 transcription factor 648453 2 2 2 0 0 1 0 1 0 0 0.052 0.75 -1188 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8) 747318 3 3 3 0 0 2 1 0 0 0 0.052 0.75 -1189 MUC21 868491 3 3 3 1 0 2 0 1 0 0 0.052 0.75 -1190 GALNT11 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) 948597 3 3 3 0 2 0 0 1 0 0 0.052 0.75 -1191 PREPL prolyl endopeptidase-like 1135680 3 3 3 0 0 0 1 0 2 0 0.052 0.75 -1192 PPP1R9A protein phosphatase 1, regulatory (inhibitor) subunit 9A 2100501 5 5 5 1 1 1 0 1 2 0 0.052 0.75 -1193 IARS isoleucyl-tRNA synthetase 1987947 5 5 5 1 1 1 2 0 1 0 0.052 0.75 -1194 GPR155 G protein-coupled receptor 155 1355211 4 4 4 0 1 1 1 0 1 0 0.052 0.75 -1195 TTYH2 tweety homolog 2 (Drosophila) 762528 3 3 3 1 0 1 1 1 0 0 0.052 0.75 -1196 C20orf7 chromosome 20 open reading frame 7 444132 2 2 2 0 0 1 1 0 0 0 0.052 0.75 -1197 GAL galanin prepropeptide 155649 1 1 1 0 0 0 0 0 1 0 0.052 0.75 -1198 NT5E 5'-nucleotidase, ecto (CD73) 718926 3 3 3 0 0 0 3 0 0 0 0.052 0.75 -1199 METTL7B methyltransferase like 7B 349323 2 2 2 0 1 1 0 0 0 0 0.052 0.75 -1200 E2F1 E2F transcription factor 1 456807 2 2 2 0 1 0 1 0 0 0 0.052 0.75 -1201 GRK1 G protein-coupled receptor kinase 1 207870 1 1 1 0 0 0 0 0 1 0 0.052 0.75 -1202 SUOX sulfite oxidase 836550 3 3 3 0 1 0 1 0 1 0 0.052 0.75 -1203 ZFHX3 zinc finger homeobox 3 5528835 9 9 9 4 1 2 1 1 4 0 0.052 0.75 -1204 TAS2R43 taste receptor, type 2, member 43 473538 3 2 3 0 0 0 1 1 1 0 0.053 0.75 -1205 COPE coatomer protein complex, subunit epsilon 151593 1 1 1 1 0 0 1 0 0 0 0.053 0.75 -1206 SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 652509 2 2 2 0 1 0 0 0 1 0 0.053 0.75 -1207 C12orf71 414726 2 2 2 0 1 0 0 1 0 0 0.053 0.75 -1208 BMP2 bone morphogenetic protein 2 447174 2 2 2 3 1 1 0 0 0 0 0.053 0.75 -1209 SLC26A9 solute carrier family 26, member 9 1360788 5 4 5 0 1 1 2 1 0 0 0.053 0.75 -1210 ALDOB aldolase B, fructose-bisphosphate 571389 2 2 2 0 0 2 0 0 0 0 0.053 0.75 -1211 RAP2A RAP2A, member of RAS oncogene family 263133 1 1 1 0 0 0 0 0 1 0 0.053 0.75 -1212 TNNI3 troponin I type 3 (cardiac) 264147 1 1 1 0 0 0 1 0 0 0 0.053 0.75 -1213 ZNF578 zinc finger protein 578 904995 3 3 3 1 0 2 0 1 0 0 0.053 0.75 -1214 AMZ2 archaelysin family metallopeptidase 2 561249 2 2 2 0 0 0 2 0 0 0 0.053 0.75 -1215 C3orf10 chromosome 3 open reading frame 10 121680 1 1 1 0 1 0 0 0 0 0 0.053 0.75 -1216 CNTNAP5 contactin associated protein-like 5 2033070 5 5 5 1 1 3 1 0 0 0 0.053 0.76 -1217 PCDHA7 protocadherin alpha 7 1248234 4 4 4 1 2 1 1 0 0 0 0.053 0.76 -1218 ZNF215 zinc finger protein 215 798018 2 2 2 0 0 1 0 0 1 0 0.053 0.76 -1219 LAPTM5 lysosomal associated multispanning membrane protein 5 208884 1 1 1 1 0 1 0 0 0 0 0.054 0.76 -1220 COX19 COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) 100893 1 1 1 0 0 1 0 0 0 0 0.054 0.76 -1221 GPI glucose phosphate isomerase 828438 2 2 2 0 0 0 1 0 1 0 0.054 0.76 -1222 ACSS3 acyl-CoA synthetase short-chain family member 3 973947 4 3 4 0 1 1 0 0 2 0 0.054 0.76 -1223 PTPRU protein tyrosine phosphatase, receptor type, U 1978821 5 5 5 0 1 3 0 0 1 0 0.054 0.76 -1224 TCEAL3 transcription elongation factor A (SII)-like 3 307749 1 1 1 0 0 0 0 0 1 0 0.054 0.76 -1225 TPPP2 tubulin polymerization-promoting protein family member 2 266175 1 1 1 0 0 0 1 0 0 0 0.054 0.76 -1226 TRPC7 transient receptor potential cation channel, subfamily C, member 7 1276119 4 4 4 1 2 0 1 0 1 0 0.054 0.76 -1227 SELT 131820 1 1 1 1 1 0 0 0 0 0 0.054 0.76 -1228 DEC1 deleted in esophageal cancer 1 116103 1 1 1 0 0 0 0 0 1 0 0.054 0.76 -1229 GIMAP6 GTPase, IMAP family member 6 449709 2 2 2 0 0 2 0 0 0 0 0.054 0.76 -1230 SIGLEC7 sialic acid binding Ig-like lectin 7 726024 3 3 3 0 0 1 2 0 0 0 0.054 0.76 -1231 SCAP SREBF chaperone 996762 3 3 3 0 1 2 0 0 0 0 0.054 0.76 -1232 CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 279864 1 1 1 0 0 0 0 1 0 0 0.054 0.76 -1233 IL17RB interleukin 17 receptor B 754923 3 3 3 0 1 1 1 0 0 0 0.054 0.76 -1234 TSPAN12 tetraspanin 12 479622 2 2 2 0 0 1 0 0 1 0 0.054 0.76 -1235 C5orf36 chromosome 5 open reading frame 36 500409 2 2 2 2 0 0 1 0 1 0 0.054 0.76 -1236 DMRTA1 DMRT-like family A1 457821 2 2 2 0 1 0 1 0 0 0 0.054 0.76 -1237 HCFC1 host cell factor C1 (VP16-accessory protein) 2238912 5 5 5 0 0 4 1 0 0 0 0.054 0.76 -1238 PPIH peptidylprolyl isomerase H (cyclophilin H) 288990 1 1 1 0 0 0 1 0 0 0 0.054 0.76 -1239 NT5C1B 5'-nucleotidase, cytosolic IB 839592 3 3 3 1 1 1 1 0 0 0 0.054 0.76 -1240 CFP complement factor properdin 567333 2 2 2 0 1 1 0 0 0 0 0.054 0.76 -1241 ANO8 1116414 3 3 3 0 0 1 1 0 1 0 0.054 0.76 -1242 KRTAP10-7 keratin associated protein 10-7 555165 2 2 2 0 0 1 0 0 1 0 0.055 0.76 -1243 DIRC2 disrupted in renal carcinoma 2 570882 2 2 2 0 1 0 0 1 0 0 0.055 0.76 -1244 RFPL1 ret finger protein-like 1 486213 2 2 2 0 0 2 0 0 0 0 0.055 0.76 -1245 SERF2 small EDRK-rich factor 2 96837 1 1 1 0 0 0 1 0 0 0 0.055 0.76 -1246 CTDSP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 376194 2 2 2 0 1 0 1 0 0 0 0.055 0.76 -1247 SLC36A3 solute carrier family 36 (proton/amino acid symporter), member 3 736671 2 2 2 0 1 0 0 0 1 0 0.055 0.76 -1248 PDAP1 PDGFA associated protein 1 280371 1 1 1 0 0 1 0 0 0 0 0.055 0.76 -1249 MLXIP MLX interacting protein 1044420 3 3 3 0 0 0 3 0 0 0 0.055 0.76 -1250 NRXN3 neurexin 3 1825200 5 5 5 2 3 1 0 0 1 0 0.055 0.76 -1251 RPH3A rabphilin 3A homolog (mouse) 1043406 3 3 3 1 0 2 0 1 0 0 0.055 0.76 -1252 ZNF571 zinc finger protein 571 933894 3 3 3 0 0 3 0 0 0 0 0.055 0.76 -1253 OR7A10 olfactory receptor, family 7, subfamily A, member 10 473538 2 2 2 1 0 0 0 0 2 0 0.055 0.76 -1254 SLC6A18 solute carrier family 6, member 18 790920 2 2 2 1 0 1 0 0 1 0 0.055 0.76 -1255 DAB2IP DAB2 interacting protein 1385124 4 4 4 1 2 1 1 0 0 0 0.055 0.76 -1256 DDX49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 477594 2 2 2 0 1 1 0 0 0 0 0.055 0.76 -1257 TBL2 transducin (beta)-like 2 608907 2 2 2 0 0 0 1 1 0 0 0.055 0.76 -1258 PGLYRP3 peptidoglycan recognition protein 3 534378 2 2 2 0 0 2 0 0 0 0 0.055 0.76 -1259 DUPD1 dual specificity phosphatase and pro isomerase domain containing 1 314847 1 1 1 0 0 0 0 0 1 0 0.055 0.76 -1260 VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae) 1434810 4 4 4 0 1 1 2 0 0 0 0.055 0.76 -1261 COMMD2 COMM domain containing 2 314340 1 1 1 0 0 0 0 0 1 0 0.056 0.76 -1262 SPRR2F small proline-rich protein 2F 113061 1 1 1 0 0 0 0 0 1 0 0.056 0.76 -1263 VIT vitrin 1136694 3 3 3 1 1 1 0 0 1 0 0.056 0.76 -1264 DPAGT1 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 640341 2 2 2 0 0 1 0 0 1 0 0.056 0.76 -1265 GAA glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II) 527280 2 2 2 0 1 0 1 0 0 0 0.056 0.76 -1266 ULBP3 UL16 binding protein 3 334113 2 2 2 0 0 0 2 0 0 0 0.056 0.76 -1267 PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta (congenital stationary night blindness 3, autosomal dominant) 377715 2 2 2 0 1 1 0 0 0 0 0.056 0.76 -1268 IPCEF1 687999 2 2 2 0 0 0 1 0 1 0 0.056 0.76 -1269 KLHL7 kelch-like 7 (Drosophila) 852267 3 3 3 1 0 1 0 1 1 0 0.056 0.76 -1270 RAB2A RAB2A, member RAS oncogene family 314847 1 1 1 0 0 0 0 0 1 0 0.056 0.76 -1271 CX3CR1 chemokine (C-X3-C motif) receptor 1 594204 2 2 2 0 0 1 1 0 0 0 0.056 0.76 -1272 CCNI2 cyclin I family, member 2 295074 1 1 1 0 0 0 1 0 0 0 0.056 0.76 -1273 ZNF425 zinc finger protein 425 1142271 3 3 3 0 0 2 0 1 0 0 0.056 0.76 -1274 DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) 429429 2 2 2 0 1 1 0 0 0 0 0.056 0.76 -1275 CD52 CD52 molecule 98358 1 1 1 0 1 0 0 0 0 0 0.056 0.76 -1276 MYO10 myosin X 2875704 6 6 6 5 1 1 2 0 2 0 0.056 0.76 -1277 MEGF11 multiple EGF-like-domains 11 900939 3 3 3 1 0 0 2 1 0 0 0.057 0.76 -1278 FGFR4 fibroblast growth factor receptor 4 1279668 3 3 3 1 1 1 0 0 1 0 0.057 0.76 -1279 C17orf71 chromosome 17 open reading frame 71 1516437 4 4 4 0 1 1 0 1 1 0 0.057 0.76 -1280 LYN v-yes-1 Yamaguchi sarcoma viral related oncogene homolog 804609 3 3 3 0 1 2 0 0 0 0 0.057 0.77 -1281 ASB9 ankyrin repeat and SOCS box-containing 9 477594 2 2 2 0 0 1 1 0 0 0 0.057 0.77 -1282 PINK1 PTEN induced putative kinase 1 702702 2 2 2 0 0 0 1 1 0 0 0.057 0.77 -1283 APOB48R 1314651 4 4 4 2 0 3 1 0 0 0 0.057 0.77 -1284 FAM124A family with sequence similarity 124A 752895 3 3 3 0 2 1 0 0 0 0 0.057 0.77 -1285 KLC4 kinesin light chain 4 1022112 3 3 3 0 1 1 0 0 1 0 0.057 0.77 -1286 ITGA11 integrin, alpha 11 1619358 4 4 4 2 1 2 1 0 0 0 0.057 0.77 -1287 ZNF675 zinc finger protein 675 873561 3 3 3 0 0 0 2 0 1 0 0.057 0.77 -1288 CDS1 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 667719 2 2 2 0 0 0 1 1 0 0 0.057 0.77 -1289 DPRX divergent-paired related homeobox 298116 2 1 2 0 0 0 0 0 0 2 0.057 0.77 -1290 RNPC3 RNA-binding region (RNP1, RRM) containing 3 69459 1 1 1 0 0 0 1 0 0 0 0.057 0.77 -1291 MDH2 malate dehydrogenase 2, NAD (mitochondrial) 445653 2 2 2 0 1 1 0 0 0 0 0.057 0.77 -1292 SPTBN5 spectrin, beta, non-erythrocytic 5 2240940 5 5 5 0 1 1 1 0 2 0 0.057 0.77 -1293 ZCCHC12 zinc finger, CCHC domain containing 12 614991 2 2 2 0 0 0 0 1 1 0 0.057 0.77 -1294 PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma 121173 1 1 1 0 0 1 0 0 0 0 0.057 0.77 -1295 GPRIN3 GPRIN family member 3 1183845 3 3 3 1 0 1 0 0 2 0 0.057 0.77 -1296 PMVK phosphomevalonate kinase 253500 1 1 1 1 0 1 0 0 0 0 0.057 0.77 -1297 SETMAR SET domain and mariner transposase fusion gene 507507 2 2 2 0 1 0 0 1 0 0 0.058 0.77 -1298 BRIX1 451737 2 2 2 1 1 1 0 0 0 0 0.058 0.77 -1299 PDZD7 PDZ domain containing 7 632736 2 2 2 1 0 1 1 0 0 0 0.058 0.77 -1300 DENND1A DENN/MADD domain containing 1A 1126047 3 3 3 1 0 1 0 0 2 0 0.058 0.77 -1301 ASCL3 achaete-scute complex homolog 3 (Drosophila) 278850 1 1 1 1 0 0 0 1 0 0 0.058 0.77 -1302 GPR143 G protein-coupled receptor 143 505479 2 2 2 0 0 2 0 0 0 0 0.058 0.77 -1303 PWP2 PWP2 periodic tryptophan protein homolog (yeast) 1068249 3 3 3 1 1 2 0 0 0 0 0.058 0.77 -1304 PAOX polyamine oxidase (exo-N4-amino) 381264 2 2 2 0 1 0 0 1 0 0 0.058 0.77 -1305 GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 846183 3 3 3 0 1 1 1 0 0 0 0.058 0.77 -1306 PDILT 912093 3 3 3 0 0 2 0 1 0 0 0.058 0.77 -1307 NLRP2 NLR family, pyrin domain containing 2 1639638 4 4 4 1 0 0 1 1 2 0 0.058 0.77 -1308 HIST1H2AA histone cluster 1, H2aa 202800 1 1 1 0 0 0 1 0 0 0 0.058 0.77 -1309 C2orf28 chromosome 2 open reading frame 28 311805 1 1 1 0 0 0 0 0 1 0 0.058 0.77 -1310 POTEH 322452 1 1 1 1 0 0 0 0 1 0 0.058 0.77 -1311 HIST1H4J histone cluster 1, H4j 122187 1 1 1 0 1 0 0 0 0 0 0.058 0.77 -1312 MCART6 mitochondrial carrier triple repeat 6 470496 2 2 2 0 0 2 0 0 0 0 0.058 0.77 -1313 SEC31A SEC31 homolog A (S. cerevisiae) 1902771 5 5 5 0 0 3 1 0 1 0 0.058 0.77 -1314 PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 580008 2 2 2 0 1 0 0 0 1 0 0.058 0.77 -1315 NAT15 229671 1 1 1 0 0 1 0 0 0 0 0.058 0.77 -1316 CYTH4 548067 2 2 2 0 0 1 0 1 0 0 0.058 0.77 -1317 RTP2 receptor (chemosensory) transporter protein 2 347295 2 2 2 0 1 0 1 0 0 0 0.059 0.77 -1318 RNF14 ring finger protein 14 736671 2 2 2 0 0 0 0 0 2 0 0.059 0.77 -1319 APLNR 581529 2 2 2 0 2 0 0 0 0 0 0.059 0.77 -1320 C1orf58 chromosome 1 open reading frame 58 650988 3 2 3 2 1 0 0 0 0 2 0.059 0.77 -1321 NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 79092 1 1 1 0 0 1 0 0 0 0 0.059 0.77 -1322 C2orf76 203307 1 1 1 0 0 0 1 0 0 0 0.059 0.77 -1323 MYEOV2 myeloma overexpressed 2 315861 1 1 1 0 0 0 0 0 1 0 0.059 0.77 -1324 AMELX amelogenin (amelogenesis imperfecta 1, X-linked) 325494 1 1 1 0 0 0 0 0 1 0 0.059 0.77 -1325 KIAA0232 KIAA0232 2139540 5 5 5 1 0 1 3 0 1 0 0.059 0.77 -1326 GFPT2 glutamine-fructose-6-phosphate transaminase 2 964821 3 3 3 1 1 0 2 0 0 0 0.059 0.77 -1327 VGLL4 vestigial like 4 (Drosophila) 325494 1 1 1 0 0 0 0 0 1 0 0.059 0.77 -1328 HDAC1 histone deacetylase 1 709293 2 2 2 1 0 1 0 0 1 0 0.059 0.77 -1329 HRSP12 heat-responsive protein 12 222066 1 1 1 0 0 1 0 0 0 0 0.059 0.77 -1330 MTOR 3987555 8 8 8 1 1 1 3 2 1 0 0.059 0.77 -1331 NCOR2 nuclear receptor co-repressor 2 1320228 3 3 3 2 1 0 1 0 1 0 0.059 0.77 -1332 POM121L12 387855 2 2 2 2 0 1 1 0 0 0 0.059 0.77 -1333 SMAD9 SMAD family member 9 665691 2 2 2 0 0 2 0 0 0 0 0.060 0.77 -1334 CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2 782808 3 3 3 1 1 1 1 0 0 0 0.060 0.77 -1335 P2RY4 pyrimidinergic receptor P2Y, G-protein coupled, 4 558714 2 2 2 1 1 1 0 0 0 0 0.060 0.77 -1336 KRT81 keratin 81 334620 1 1 1 2 0 0 0 0 1 0 0.060 0.77 -1337 PLSCR2 phospholipid scramblase 2 354393 2 2 2 0 1 0 0 1 0 0 0.060 0.77 -1338 PKNOX2 PBX/knotted 1 homeobox 2 739713 2 2 2 0 0 1 0 0 1 0 0.060 0.77 -1339 ACPT acid phosphatase, testicular 341718 2 2 2 0 0 1 1 0 0 0 0.060 0.77 -1340 WDR86 WD repeat domain 86 233220 1 1 1 0 1 0 0 0 0 0 0.060 0.77 -1341 GPR1 G protein-coupled receptor 1 543504 2 2 2 0 1 0 0 1 0 0 0.060 0.77 -1342 CYB5R2 cytochrome b5 reductase 2 437034 2 2 2 0 0 1 1 0 0 0 0.060 0.77 -1343 TRO trophinin 2270853 5 5 5 1 1 1 1 0 2 0 0.060 0.77 -1344 ROPN1 ropporin, rhophilin associated protein 1 334113 2 2 2 0 1 1 0 0 0 0 0.060 0.77 -1345 RRAD Ras-related associated with diabetes 300144 1 1 1 0 0 0 0 1 0 0 0.060 0.77 -1346 OR51Q1 olfactory receptor, family 51, subfamily Q, member 1 485706 2 2 2 0 1 0 1 0 0 0 0.060 0.77 -1347 MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 260091 1 1 1 0 0 0 1 0 0 0 0.060 0.77 -1348 MLPH melanophilin 660114 2 2 2 0 0 1 0 1 0 0 0.060 0.77 -1349 IL23R interleukin 23 receptor 972426 3 3 3 0 0 1 1 0 1 0 0.060 0.77 -1350 PABPC1 poly(A) binding protein, cytoplasmic 1 897390 3 3 3 1 0 1 1 0 1 0 0.060 0.77 -1351 COLEC12 collectin sub-family member 12 1119456 3 3 3 0 1 0 1 0 1 0 0.060 0.77 -1352 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) 604344 2 2 2 0 0 0 1 0 1 0 0.060 0.77 -1353 SLC22A14 solute carrier family 22, member 14 901446 3 2 3 0 0 1 0 0 0 2 0.060 0.77 -1354 MRPL43 mitochondrial ribosomal protein L43 329550 1 1 1 0 0 0 0 0 1 0 0.060 0.77 -1355 TBX4 T-box 4 750360 2 2 2 0 1 0 0 0 1 0 0.060 0.77 -1356 SNX20 sorting nexin 20 358449 2 2 2 1 1 0 1 0 0 0 0.061 0.77 -1357 CD1B CD1b molecule 520182 2 2 2 0 1 1 0 0 0 0 0.061 0.77 -1358 UBXN11 688506 2 2 2 0 0 1 1 0 0 0 0.061 0.77 -1359 ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17 2486328 4 4 3 2 0 1 0 0 3 0 0.061 0.77 -1360 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 560742 2 2 2 0 0 0 1 0 1 0 0.061 0.77 -1361 C6orf62 chromosome 6 open reading frame 62 359970 2 2 2 0 1 0 0 0 1 0 0.061 0.77 -1362 TG thyroglobulin 4275024 9 9 9 1 3 4 1 0 1 0 0.061 0.77 -1363 C17orf77 chromosome 17 open reading frame 77 373152 2 2 2 0 0 2 0 0 0 0 0.061 0.77 -1364 ATG16L2 ATG16 autophagy related 16-like 2 (S. cerevisiae) 652509 2 2 2 0 0 1 1 0 0 0 0.061 0.77 -1365 DGKA diacylglycerol kinase, alpha 80kDa 1166100 3 3 3 0 0 0 1 1 1 0 0.061 0.77 -1366 H2AFZ H2A histone family, member Z 178464 1 1 1 0 0 0 0 1 0 0 0.061 0.77 -1367 DEFB118 defensin, beta 118 192660 1 1 1 0 0 1 0 0 0 0 0.061 0.77 -1368 ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 7541625 13 13 13 1 3 5 3 0 2 0 0.061 0.77 -1369 PHF15 PHD finger protein 15 1150890 3 3 3 0 0 2 1 0 0 0 0.061 0.77 -1370 SEZ6L2 seizure related 6 homolog (mouse)-like 2 1255332 3 3 3 2 0 1 1 0 1 0 0.061 0.77 -1371 RNF212 ring finger protein 212 334113 1 1 1 0 0 0 0 0 1 0 0.061 0.77 -1372 C19orf51 chromosome 19 open reading frame 51 660621 2 2 1 0 0 0 2 0 0 0 0.061 0.77 -1373 CASP2 caspase 2, apoptosis-related cysteine peptidase (neural precursor cell expressed, developmentally down-regulated 2) 671775 2 2 2 0 0 1 0 1 0 0 0.062 0.77 -1374 RAN RAN, member RAS oncogene family 321945 1 1 1 0 0 0 0 0 1 0 0.062 0.77 -1375 WDR13 WD repeat domain 13 732108 2 2 2 0 0 0 1 0 1 0 0.062 0.77 -1376 SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 621075 2 2 2 0 0 1 0 0 1 0 0.062 0.77 -1377 SFRS2 splicing factor, arginine/serine-rich 2 134355 1 1 1 0 0 0 0 1 0 0 0.062 0.77 -1378 TAS2R16 taste receptor, type 2, member 16 446160 2 2 2 1 1 0 0 1 0 0 0.062 0.77 -1379 ZNF41 zinc finger protein 41 1155960 3 3 3 0 0 1 2 0 0 0 0.062 0.77 -1380 C12orf68 219024 1 1 1 0 0 0 0 0 1 0 0.062 0.77 -1381 OBFC2B oligonucleotide/oligosaccharide-binding fold containing 2B 333099 1 1 1 0 0 0 0 0 1 0 0.062 0.77 -1382 CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 578487 2 2 2 0 1 0 0 0 1 0 0.062 0.77 -1383 F12 coagulation factor XII (Hageman factor) 340197 1 1 1 0 0 0 0 1 0 0 0.062 0.77 -1384 RAB24 RAB24, member RAS oncogene family 326508 1 1 1 0 0 0 0 1 0 0 0.062 0.77 -1385 B3GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 578487 2 2 2 0 0 1 1 0 0 0 0.062 0.77 -1386 OR11H6 olfactory receptor, family 11, subfamily H, member 6 505479 2 2 2 0 0 2 0 0 0 0 0.062 0.77 -1387 YY1AP1 YY1 associated protein 1 1187901 3 3 3 1 0 0 2 0 1 0 0.062 0.77 -1388 LEPREL1 leprecan-like 1 863421 3 3 3 0 1 1 1 0 0 0 0.062 0.77 -1389 MEF2C myocyte enhancer factor 2C 712335 2 2 2 0 1 0 0 0 1 0 0.062 0.77 -1390 FAM136A family with sequence similarity 136, member A 171366 1 1 1 0 1 0 0 0 0 0 0.062 0.77 -1391 ALDH3B1 aldehyde dehydrogenase 3 family, member B1 423852 2 2 2 1 0 0 0 2 0 0 0.062 0.77 -1392 PNCK pregnancy upregulated non-ubiquitously expressed CaM kinase 561249 2 2 2 1 0 1 0 0 1 0 0.062 0.77 -1393 ZNF330 zinc finger protein 330 506493 2 2 2 0 1 0 0 1 0 0 0.062 0.77 -1394 ATF3 activating transcription factor 3 315354 1 1 1 1 0 0 0 1 0 0 0.063 0.77 -1395 ANPEP alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150) 1512888 3 3 3 0 1 1 0 0 1 0 0.063 0.78 -1396 MTMR12 myotubularin related protein 12 1127061 3 3 3 1 0 0 2 0 1 0 0.063 0.78 -1397 ZNF266 zinc finger protein 266 844662 3 3 3 0 2 1 0 0 0 0 0.063 0.78 -1398 OR1A2 olfactory receptor, family 1, subfamily A, member 2 473538 2 2 2 0 0 0 0 2 0 0 0.063 0.78 -1399 MC3R melanocortin 3 receptor 494832 2 2 2 0 0 2 0 0 0 0 0.063 0.78 -1400 RDH5 retinol dehydrogenase 5 (11-cis/9-cis) 493311 2 2 2 1 0 1 0 0 1 0 0.063 0.78 -1401 RPS14 ribosomal protein S14 239304 1 1 1 0 0 0 1 0 0 0 0.063 0.78 -1402 ZNF511 zinc finger protein 511 216996 1 1 1 0 1 0 0 0 0 0 0.063 0.78 -1403 KLHL38 891306 3 3 3 2 1 0 2 0 0 0 0.063 0.78 -1404 TMEM167B 106977 1 1 1 0 0 0 1 0 0 0 0.063 0.78 -1405 NOL6 nucleolar protein family 6 (RNA-associated) 1717716 4 4 4 1 1 2 0 0 1 0 0.063 0.78 -1406 ACYP1 acylphosphatase 1, erythrocyte (common) type 198237 1 1 1 0 0 1 0 0 0 0 0.063 0.78 -1407 SLC23A3 solute carrier family 23 (nucleobase transporters), member 3 835029 3 3 3 0 1 1 1 0 0 0 0.063 0.78 -1408 MYH6 myosin, heavy chain 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1) 3012087 7 7 7 2 0 4 2 1 0 0 0.064 0.78 -1409 TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) 273780 1 1 1 0 0 0 1 0 0 0 0.064 0.78 -1410 KRT19 keratin 19 471510 2 2 2 0 0 1 0 0 1 0 0.064 0.78 -1411 TLL2 tolloid-like 2 1515423 4 4 4 0 1 1 1 1 0 0 0.064 0.78 -1412 GPR26 G protein-coupled receptor 26 342225 1 1 1 0 0 0 0 0 1 0 0.064 0.78 -1413 NEK3 NIMA (never in mitosis gene a)-related kinase 3 747825 2 2 2 0 1 0 0 0 1 0 0.064 0.78 -1414 ELF1 E74-like factor 1 (ets domain transcription factor) 959244 4 3 4 0 0 0 2 0 2 0 0.064 0.78 -1415 ZIC2 Zic family member 2 (odd-paired homolog, Drosophila) 312312 1 1 1 0 0 0 0 0 1 0 0.064 0.78 -1416 PDCD6IP programmed cell death 6 interacting protein 1257867 3 3 3 0 0 1 0 1 1 0 0.064 0.78 -1417 PCDHB5 protocadherin beta 5 1209195 3 3 3 3 0 1 1 0 1 0 0.064 0.78 -1418 MOS v-mos Moloney murine sarcoma viral oncogene homolog 498381 2 2 2 0 0 0 1 0 1 0 0.064 0.78 -1419 OR2F1 olfactory receptor, family 2, subfamily F, member 1 485706 2 2 2 1 0 1 0 0 1 0 0.064 0.78 -1420 ETNK2 ethanolamine kinase 2 299130 1 1 1 0 0 0 1 0 0 0 0.064 0.78 -1421 KLHL24 kelch-like 24 (Drosophila) 926289 3 3 3 0 0 0 2 1 0 0 0.064 0.78 -1422 KLF17 Kruppel-like factor 17 556179 2 2 2 0 0 1 0 0 1 0 0.064 0.78 -1423 TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like 2780895 6 6 6 1 1 1 2 0 2 0 0.064 0.78 -1424 NCAM1 neural cell adhesion molecule 1 1353183 4 4 4 0 2 1 1 0 0 0 0.065 0.78 -1425 CEACAM21 carcinoembryonic antigen-related cell adhesion molecule 21 459342 2 2 2 0 0 1 0 0 1 0 0.065 0.78 -1426 SGSM1 small G protein signaling modulator 1 1534182 4 4 4 0 1 2 1 0 0 0 0.065 0.78 -1427 WDR49 WD repeat domain 49 1090050 3 3 3 0 0 0 2 0 1 0 0.065 0.78 -1428 OR13C8 olfactory receptor, family 13, subfamily C, member 8 490269 2 2 2 0 0 1 1 0 0 0 0.065 0.78 -1429 RPH3AL rabphilin 3A-like (without C2 domains) 221559 1 1 1 0 0 0 0 0 1 0 0.065 0.78 -1430 MYH7 myosin, heavy chain 7, cardiac muscle, beta 3021720 6 6 6 1 0 2 0 1 3 0 0.065 0.78 -1431 CD302 CD302 molecule 330564 1 1 1 0 0 0 0 0 1 0 0.065 0.78 -1432 F2R coagulation factor II (thrombin) receptor 605358 2 2 2 0 0 1 0 1 0 0 0.065 0.78 -1433 NBEAL1 neurobeachin-like 1 2222688 5 5 5 0 0 2 2 1 0 0 0.065 0.78 -1434 BCAR3 breast cancer anti-estrogen resistance 3 1232517 3 3 3 0 0 1 1 1 0 0 0.065 0.78 -1435 MLXIPL MLX interacting protein-like 394446 2 2 2 0 1 0 1 0 0 0 0.065 0.78 -1436 RERGL RERG/RAS-like 323466 1 1 1 0 0 0 0 1 0 0 0.065 0.78 -1437 SERINC1 serine incorporator 1 707265 2 2 2 0 0 0 1 0 1 0 0.065 0.78 -1438 TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 697632 2 2 2 0 1 1 0 0 0 0 0.065 0.78 -1439 PARP15 poly (ADP-ribose) polymerase family, member 15 693069 2 2 2 0 0 2 0 0 0 0 0.065 0.78 -1440 PPP2CB protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform 392925 2 2 2 0 0 1 1 0 0 0 0.065 0.78 -1441 SLC35A4 solute carrier family 35, member A4 496353 2 2 2 0 0 1 1 0 0 0 0.065 0.78 -1442 FSD2 fibronectin type III and SPRY domain containing 2 1131624 3 3 3 0 0 1 1 0 1 0 0.065 0.78 -1443 ATP10A ATPase, class V, type 10A 1973751 5 5 5 0 1 3 0 0 1 0 0.066 0.78 -1444 NRK Nik related kinase 2370732 5 5 5 0 1 1 0 0 3 0 0.066 0.78 -1445 OR10J5 olfactory receptor, family 10, subfamily J, member 5 473538 2 2 2 0 0 2 0 0 0 0 0.066 0.78 -1446 ECHDC2 enoyl Coenzyme A hydratase domain containing 2 353379 1 1 1 0 0 0 0 0 1 0 0.066 0.78 -1447 SH3GL2 SH3-domain GRB2-like 2 530322 2 2 2 0 2 0 0 0 0 0 0.066 0.78 -1448 CXorf40A chromosome X open reading frame 40A 245895 1 1 1 0 0 0 1 0 0 0 0.066 0.78 -1449 WDR17 WD repeat domain 17 2073123 5 5 5 0 1 1 3 0 0 0 0.066 0.78 -1450 DPPA3 developmental pluripotency associated 3 251472 1 1 1 0 0 1 0 0 0 0 0.066 0.78 -1451 CDKL1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 564291 2 2 2 0 0 1 0 0 1 0 0.066 0.78 -1452 EED embryonic ectoderm development 640341 2 2 2 1 0 0 2 0 0 0 0.066 0.78 -1453 LTBP4 latent transforming growth factor beta binding protein 4 1680705 4 4 4 0 0 3 0 0 1 0 0.066 0.78 -1454 PSIP1 PC4 and SFRS1 interacting protein 1 852774 2 2 2 1 1 0 0 0 1 0 0.066 0.78 -1455 SMYD1 SET and MYND domain containing 1 737178 2 2 2 2 0 0 1 0 1 0 0.066 0.78 -1456 APOBEC2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 346281 1 1 1 1 0 0 0 0 1 0 0.066 0.78 -1457 GPKOW G patch domain and KOW motifs 738192 2 2 2 0 0 1 1 0 0 0 0.066 0.78 -1458 PYGB phosphorylase, glycogen; brain 1154946 3 3 3 1 1 1 0 0 1 0 0.066 0.78 -1459 C1QTNF7 C1q and tumor necrosis factor related protein 7 449202 2 2 2 0 0 1 0 1 0 0 0.066 0.78 -1460 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 1171170 3 3 3 0 1 1 1 0 0 0 0.066 0.78 -1461 CCDC53 coiled-coil domain containing 53 242853 1 1 1 0 0 0 0 0 1 0 0.066 0.79 -1462 ELOVL6 ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) 412698 2 2 2 0 0 1 0 1 0 0 0.067 0.79 -1463 AGGF1 angiogenic factor with G patch and FHA domains 1 1058616 3 3 3 0 1 2 0 0 0 0 0.067 0.79 -1464 OR6C6 olfactory receptor, family 6, subfamily C, member 6 481143 2 2 2 0 1 1 0 0 0 0 0.067 0.79 -1465 C2orf51 chromosome 2 open reading frame 51 281385 1 1 1 0 0 0 0 0 1 0 0.067 0.79 -1466 TRAPPC10 1778556 4 4 4 0 1 1 0 0 2 0 0.067 0.79 -1467 WHSC1 Wolf-Hirschhorn syndrome candidate 1 1864239 4 4 4 0 1 1 1 0 1 0 0.067 0.79 -1468 C9orf43 chromosome 9 open reading frame 43 729066 2 2 2 1 0 0 1 1 0 0 0.067 0.79 -1469 SH3BP1 SH3-domain binding protein 1 523731 2 2 2 0 1 0 1 0 0 0 0.067 0.79 -1470 RPL3L ribosomal protein L3-like 268203 1 1 1 0 1 0 0 0 0 0 0.067 0.79 -1471 ISLR immunoglobulin superfamily containing leucine-rich repeat 654537 2 2 2 0 0 1 1 0 0 0 0.067 0.79 -1472 DSE dermatan sulfate epimerase 1361295 4 4 4 1 1 2 1 0 0 0 0.067 0.79 -1473 CCDC9 coiled-coil domain containing 9 575445 2 2 2 0 1 1 0 0 0 0 0.067 0.79 -1474 ZBTB17 zinc finger and BTB domain containing 17 745290 2 2 2 0 0 0 1 0 1 0 0.067 0.79 -1475 RNF182 ring finger protein 182 379236 2 2 2 0 1 0 0 1 0 0 0.067 0.79 -1476 TBKBP1 TBK1 binding protein 1 545532 2 2 2 0 1 0 0 0 1 0 0.067 0.79 -1477 HIST1H2AG histone cluster 1, H2ag 201279 1 1 1 1 0 0 1 0 0 0 0.067 0.79 -1478 NEUROG3 neurogenin 3 325494 1 1 1 0 0 0 1 0 0 0 0.067 0.79 -1479 CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 1225419 3 3 3 1 0 0 1 1 1 0 0.067 0.79 -1480 FCER1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide 402558 2 2 2 0 1 1 0 0 0 0 0.067 0.79 -1481 AQP2 aquaporin 2 (collecting duct) 344760 1 1 1 0 0 0 1 0 0 0 0.068 0.79 -1482 TXNL4A thioredoxin-like 4A 143988 1 1 1 0 0 0 0 0 1 0 0.068 0.79 -1483 INPP5B inositol polyphosphate-5-phosphatase, 75kDa 1436838 4 4 4 1 1 1 1 1 0 0 0.068 0.79 -1484 ZC3H15 zinc finger CCCH-type containing 15 629694 2 2 2 0 1 0 0 0 1 0 0.068 0.79 -1485 N4BP2 NEDD4 binding protein 2 2726139 6 6 6 0 0 4 2 0 0 0 0.068 0.79 -1486 BMPR1B bone morphogenetic protein receptor, type IB 762528 2 2 2 1 0 1 0 0 1 0 0.068 0.79 -1487 ZSCAN21 zinc finger and SCAN domain containing 21 727038 2 2 2 0 0 1 0 0 1 0 0.068 0.79 -1488 LRP3 low density lipoprotein receptor-related protein 3 361491 1 1 1 0 0 0 0 0 1 0 0.068 0.79 -1489 ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 606879 2 2 2 0 0 2 0 0 0 0 0.068 0.79 -1490 C9orf96 chromosome 9 open reading frame 96 539955 2 2 2 0 0 1 1 0 0 0 0.068 0.79 -1491 TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa 1238601 3 3 3 1 0 0 1 0 2 0 0.068 0.79 -1492 SFPQ splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) 675324 2 2 2 0 0 0 1 0 1 0 0.068 0.79 -1493 SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 1673607 4 4 4 0 2 2 0 0 0 0 0.068 0.79 -1494 HIST1H2BA histone cluster 1, H2ba 196716 1 1 1 0 0 0 0 0 1 0 0.069 0.79 -1495 RAB6A RAB6A, member RAS oncogene family 356421 1 1 1 0 0 0 0 0 1 0 0.069 0.79 -1496 TMEM38A transmembrane protein 38A 403572 2 2 2 0 0 1 0 0 1 0 0.069 0.79 -1497 RAD51AP1 RAD51 associated protein 1 557193 2 2 2 0 0 1 1 0 0 0 0.069 0.79 -1498 RNF180 ring finger protein 180 609921 2 2 2 0 2 0 0 0 0 0 0.069 0.79 -1499 ABR active BCR-related gene 825903 3 3 3 2 1 2 0 0 0 0 0.069 0.79 -1500 LAMB4 laminin, beta 4 2728167 6 6 6 0 0 4 1 0 1 0 0.069 0.79 -1501 TMEM52 transmembrane protein 52 133848 1 1 1 0 0 0 0 1 0 0 0.069 0.79 -1502 OR5H2 olfactory receptor, family 5, subfamily H, member 2 481143 2 2 2 0 0 0 2 0 0 0 0.069 0.79 -1503 SPANXN5 SPANX family, member N5 115089 1 1 1 0 0 0 1 0 0 0 0.069 0.79 -1504 TRIM63 tripartite motif-containing 63 556686 2 2 2 0 1 0 0 1 0 0 0.069 0.79 -1505 PIGR polymeric immunoglobulin receptor 1160016 3 3 3 0 0 2 1 0 0 0 0.069 0.79 -1506 SPACA1 sperm acrosome associated 1 355407 1 1 1 0 0 0 0 0 1 0 0.069 0.79 -1507 MYL7 myosin, light chain 7, regulatory 258063 1 1 1 0 0 1 0 0 0 0 0.069 0.79 -1508 CPNE1 copine I 858351 2 2 2 0 0 1 0 0 1 0 0.069 0.79 -1509 TIMM22 translocase of inner mitochondrial membrane 22 homolog (yeast) 182013 1 1 1 1 1 0 0 0 0 0 0.070 0.79 -1510 PVRIG poliovirus receptor related immunoglobulin domain containing 406614 2 2 2 0 1 1 0 0 0 0 0.070 0.79 -1511 COL1A1 collagen, type I, alpha 1 2101008 6 4 6 1 4 0 1 0 1 0 0.070 0.79 -1512 RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 764556 2 2 2 0 0 0 0 1 1 0 0.070 0.79 -1513 KRAS v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 358449 1 1 1 0 0 0 0 0 1 0 0.070 0.79 -1514 ATG4A ATG4 autophagy related 4 homolog A (S. cerevisiae) 633243 2 2 2 0 0 0 1 0 1 0 0.070 0.79 -1515 C7orf53 chromosome 7 open reading frame 53 206856 1 1 1 0 0 1 0 0 0 0 0.070 0.79 -1516 HRASLS HRAS-like suppressor 263133 1 1 1 1 0 1 0 0 0 0 0.070 0.79 -1517 UBE2CBP ubiquitin-conjugating enzyme E2C binding protein 572403 2 2 2 0 1 1 0 0 0 0 0.070 0.79 -1518 ARHGAP15 Rho GTPase activating protein 15 750360 2 2 2 1 0 0 2 0 0 0 0.070 0.79 -1519 RFXANK regulatory factor X-associated ankyrin-containing protein 367068 1 1 1 0 0 0 0 0 1 0 0.070 0.79 -1520 C4orf31 chromosome 4 open reading frame 31 871533 3 3 3 0 2 0 1 0 0 0 0.070 0.79 -1521 CNTN2 contactin 2 (axonal) 1627977 4 4 4 1 0 0 3 0 1 0 0.070 0.79 -1522 HIST2H2BF histone cluster 2, H2bf 195195 1 1 1 0 0 1 0 0 0 0 0.070 0.79 -1523 FAM166B 330564 1 1 1 0 0 0 0 0 1 0 0.070 0.79 -1524 MOAP1 modulator of apoptosis 1 537420 2 2 2 0 0 1 0 0 1 0 0.070 0.79 -1525 RCN1 reticulocalbin 1, EF-hand calcium binding domain 386334 2 2 2 0 1 1 0 0 0 0 0.070 0.79 -1526 HLA-E major histocompatibility complex, class I, E 559728 2 2 2 0 1 0 0 0 1 0 0.070 0.79 -1527 MAGEC3 melanoma antigen family C, 3 1164579 3 3 3 3 0 1 1 1 0 0 0.070 0.79 -1528 HGF hepatocyte growth factor (hepapoietin A; scatter factor) 1108809 3 3 3 0 1 0 2 0 0 0 0.070 0.79 -1529 SCML1 sex comb on midleg-like 1 (Drosophila) 517647 2 2 2 0 1 0 0 0 1 0 0.070 0.79 -1530 FBL fibrillarin 508014 2 2 2 0 0 1 1 0 0 0 0.070 0.79 -1531 C5orf51 408135 2 2 2 0 0 1 0 0 1 0 0.070 0.79 -1532 GBE1 glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV) 1026675 3 3 3 0 1 0 2 0 0 0 0.071 0.80 -1533 C10orf25 chromosome 10 open reading frame 25 135369 1 1 1 0 0 0 0 0 1 0 0.071 0.80 -1534 C8orf40 chromosome 8 open reading frame 40 170352 1 1 1 0 0 1 0 0 0 0 0.071 0.80 -1535 MAPK8 mitogen-activated protein kinase 8 714363 2 2 2 0 0 1 0 0 1 0 0.071 0.80 -1536 S100A10 S100 calcium binding protein A10 153114 1 1 1 0 0 0 1 0 0 0 0.071 0.80 -1537 FFAR1 free fatty acid receptor 1 167310 1 1 1 1 0 1 0 0 0 0 0.071 0.80 -1538 KDM2A 1809483 3 3 3 0 0 1 0 0 2 0 0.071 0.80 -1539 FLNC filamin C, gamma (actin binding protein 280) 3708705 8 8 8 4 1 4 2 0 1 0 0.071 0.80 -1540 C20orf43 chromosome 20 open reading frame 43 393432 2 2 2 0 0 1 1 0 0 0 0.071 0.80 -1541 SLC9A4 solute carrier family 9 (sodium/hydrogen exchanger), member 4 1239615 3 3 3 0 1 1 0 0 1 0 0.071 0.80 -1542 MYBPHL myosin binding protein H-like 556179 2 2 2 0 0 1 0 0 1 0 0.071 0.80 -1543 OR4C16 olfactory receptor, family 4, subfamily C, member 16 475059 2 2 2 0 1 1 0 0 0 0 0.071 0.80 -1544 C8orf79 chromosome 8 open reading frame 79 678873 2 2 2 0 0 1 1 0 0 0 0.071 0.80 -1545 OPRK1 opioid receptor, kappa 1 502944 2 2 2 0 1 1 0 0 0 0 0.071 0.80 -1546 NFYB nuclear transcription factor Y, beta 330564 1 1 1 1 0 0 0 0 1 0 0.071 0.80 -1547 ENDOU 545532 2 2 2 0 1 1 0 0 0 0 0.071 0.80 -1548 HCFC2 host cell factor C2 1151904 3 3 3 0 0 1 0 1 1 0 0.071 0.80 -1549 C17orf64 chromosome 17 open reading frame 64 186576 1 1 1 0 0 1 0 0 0 0 0.072 0.80 -1550 SLC35F2 solute carrier family 35, member F2 528801 2 2 2 0 1 0 0 0 1 0 0.072 0.80 -1551 HIST1H2AK histone cluster 1, H2ak 201279 1 1 1 1 0 1 0 0 0 0 0.072 0.80 -1552 DET1 de-etiolated homolog 1 (Arabidopsis) 864942 2 2 2 0 0 0 0 1 1 0 0.072 0.80 -1553 MRAP melanocortin 2 receptor accessory protein 322959 1 1 1 0 0 0 0 1 0 0 0.072 0.80 -1554 CCNA2 cyclin A2 564798 2 2 2 0 0 1 1 0 0 0 0.072 0.80 -1555 NME7 non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase) 597753 2 2 2 0 0 0 2 0 0 0 0.072 0.80 -1556 MTHFD1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase 1478412 4 4 4 0 1 1 1 0 1 0 0.072 0.80 -1557 CYB5R1 cytochrome b5 reductase 1 474045 2 2 2 0 0 1 1 0 0 0 0.072 0.80 -1558 MAGEE2 melanoma antigen family E, 2 799032 2 2 2 0 0 1 0 1 0 0 0.072 0.80 -1559 HPDL 4-hydroxyphenylpyruvate dioxygenase-like 444639 2 2 2 1 1 0 1 0 0 0 0.072 0.80 -1560 GPR97 G protein-coupled receptor 97 717405 2 2 2 0 0 1 0 0 1 0 0.072 0.80 -1561 LYZL4 lysozyme-like 4 194181 1 1 1 0 0 0 1 0 0 0 0.072 0.80 -1562 SORBS3 sorbin and SH3 domain containing 3 652509 2 2 2 0 1 0 0 0 1 0 0.072 0.80 -1563 SLC45A2 solute carrier family 45, member 2 829452 3 3 3 0 0 1 2 0 0 0 0.072 0.80 -1564 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 573417 2 2 2 0 1 0 0 1 0 0 0.072 0.80 -1565 PGC progastricsin (pepsinogen C) 609921 2 2 2 0 1 1 0 0 0 0 0.072 0.80 -1566 C17orf104 903981 2 2 2 0 0 0 0 1 1 0 0.073 0.80 -1567 TMEM90A transmembrane protein 90A 369096 1 1 1 0 0 0 0 0 1 0 0.073 0.80 -1568 MRPL2 mitochondrial ribosomal protein L2 428922 2 2 2 0 0 2 0 0 0 0 0.073 0.80 -1569 KCNMB2 potassium large conductance calcium-activated channel, subfamily M, beta member 2 367068 1 1 1 0 0 0 0 0 1 0 0.073 0.80 -1570 PRR11 proline rich 11 567333 2 2 2 0 1 0 1 0 0 0 0.073 0.80 -1571 NUDT22 nudix (nucleoside diphosphate linked moiety X)-type motif 22 360984 1 1 1 0 0 0 1 0 0 0 0.073 0.80 -1572 C2orf50 chromosome 2 open reading frame 50 155649 1 1 1 0 0 0 0 1 0 0 0.073 0.80 -1573 OR10V1 olfactory receptor, family 10, subfamily V, member 1 473538 2 2 2 1 0 1 1 0 0 0 0.073 0.80 -1574 ODF2 outer dense fiber of sperm tails 2 1346085 4 4 4 2 0 2 2 0 0 0 0.073 0.80 -1575 KIF4A kinesin family member 4A 1936233 5 5 5 2 1 3 1 0 0 0 0.073 0.80 -1576 C5orf20 chromosome 5 open reading frame 20 374673 1 1 1 0 0 0 0 0 1 0 0.073 0.80 -1577 CA6 carbonic anhydrase VI 486213 2 2 2 0 1 1 0 0 0 0 0.073 0.80 -1578 PDE4C phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila) 882687 3 3 3 1 0 2 1 0 0 0 0.073 0.80 -1579 TTC7B tetratricopeptide repeat domain 7B 1238601 4 3 4 1 0 2 2 0 0 0 0.073 0.80 -1580 GABRG2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 744276 2 2 2 0 0 2 0 0 0 0 0.073 0.80 -1581 SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1 462891 2 2 2 1 0 2 0 0 0 0 0.073 0.80 -1582 HOXA7 homeobox A7 303693 1 1 1 0 0 0 1 0 0 0 0.073 0.80 -1583 AMPD1 adenosine monophosphate deaminase 1 (isoform M) 1220349 3 3 3 1 0 0 1 1 1 0 0.073 0.80 -1584 PHF8 PHD finger protein 8 1636596 3 3 3 1 0 1 1 0 1 0 0.073 0.80 -1585 C19orf62 chromosome 19 open reading frame 62 436527 2 2 2 0 2 0 0 0 0 0 0.073 0.80 -1586 OR52N2 olfactory receptor, family 52, subfamily N, member 2 491790 2 2 2 1 0 0 1 0 1 0 0.073 0.80 -1587 TSGA13 testis specific, 13 433992 2 2 2 0 0 1 1 0 0 0 0.073 0.80 -1588 TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 1160016 3 3 3 2 1 0 1 0 1 0 0.073 0.80 -1589 ANK1 ankyrin 1, erythrocytic 2914743 6 6 6 4 2 3 0 0 1 0 0.074 0.80 -1590 MAPRE3 microtubule-associated protein, RP/EB family, member 3 441090 2 2 2 0 0 0 1 0 1 0 0.074 0.80 -1591 PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 1443429 4 4 4 0 0 1 2 1 0 0 0.074 0.80 -1592 AWAT1 514605 2 2 2 1 1 1 0 0 0 0 0.074 0.80 -1593 ZFR zinc finger RNA binding protein 1602120 4 4 4 1 1 0 0 2 1 0 0.074 0.80 -1594 MAS1 MAS1 oncogene 497874 2 2 2 0 0 0 1 1 0 0 0.074 0.80 -1595 KLK7 kallikrein-related peptidase 7 145509 1 1 1 0 1 0 0 0 0 0 0.074 0.80 -1596 NXF5 nuclear RNA export factor 5 574938 2 2 2 1 0 0 1 0 1 0 0.074 0.80 -1597 SLC9A3 solute carrier family 9 (sodium/hydrogen exchanger), member 3 377715 1 1 1 1 0 0 0 0 1 0 0.074 0.80 -1598 PRDX1 peroxiredoxin 1 314340 1 1 1 0 0 0 0 0 1 0 0.074 0.80 -1599 RNASEN ribonuclease type III, nuclear 2095431 5 5 5 0 0 0 2 3 0 0 0.074 0.80 -1600 ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) 842127 3 3 3 1 2 1 0 0 0 0 0.074 0.80 -1601 MPZL1 myelin protein zero-like 1 374673 1 1 1 0 0 0 0 0 1 0 0.074 0.80 -1602 PCDHA10 protocadherin alpha 10 845169 3 3 3 1 0 2 0 1 0 0 0.074 0.80 -1603 CTPS2 CTP synthase II 927303 2 2 2 0 0 1 0 0 1 0 0.074 0.80 -1604 FAM113B family with sequence similarity 113, member B 604851 2 2 2 0 0 2 0 0 0 0 0.074 0.80 -1605 MRPS31 mitochondrial ribosomal protein S31 616512 2 2 2 0 0 1 1 0 0 0 0.074 0.80 -1606 C7orf16 chromosome 7 open reading frame 16 245388 1 1 1 0 0 0 0 1 0 0 0.074 0.80 -1607 OPRD1 opioid receptor, delta 1 306228 1 1 1 0 0 1 0 0 0 0 0.074 0.80 -1608 C6orf225 127257 1 1 1 0 1 0 0 0 0 0 0.074 0.80 -1609 NTSR2 neurotensin receptor 2 314847 1 1 1 1 0 1 0 0 0 0 0.074 0.80 -1610 TRIM65 tripartite motif-containing 65 397488 2 2 2 0 1 0 1 0 0 0 0.075 0.80 -1611 PGA5 pepsinogen 5, group I (pepsinogen A) 287976 1 1 1 0 0 0 1 0 0 0 0.075 0.80 -1612 SLCO2A1 solute carrier organic anion transporter family, member 2A1 957216 3 3 3 1 1 0 2 0 0 0 0.075 0.80 -1613 DEFB113 defensin, beta 113 130299 1 1 1 0 0 0 1 0 0 0 0.075 0.80 -1614 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 381264 1 1 1 0 0 0 0 0 1 0 0.075 0.80 -1615 FLT3LG fms-related tyrosine kinase 3 ligand 206856 1 1 1 0 0 0 0 0 1 0 0.075 0.80 -1616 LELP1 late cornified envelope-like proline-rich 1 152607 1 1 1 0 0 1 0 0 0 0 0.075 0.80 -1617 FAM71B family with sequence similarity 71, member B 925782 3 3 3 0 0 1 2 0 0 0 0.075 0.80 -1618 PPP4R2 protein phosphatase 4, regulatory subunit 2 634764 2 2 2 0 0 0 2 0 0 0 0.075 0.80 -1619 C15orf58 589134 2 2 2 0 1 1 0 0 0 0 0.075 0.80 -1620 GALNTL6 939978 2 2 2 1 0 0 0 0 2 0 0.075 0.80 -1621 PEX11B peroxisomal biogenesis factor 11B 373152 1 1 1 0 0 0 1 0 0 0 0.075 0.80 -1622 LCE1E late cornified envelope 1E 183027 1 1 1 0 0 0 0 1 0 0 0.075 0.80 -1623 C6orf105 chromosome 6 open reading frame 105 363519 1 1 1 0 0 0 0 0 1 0 0.075 0.80 -1624 OR6A2 olfactory receptor, family 6, subfamily A, member 2 500916 2 2 2 0 0 1 1 0 0 0 0.075 0.80 -1625 OR4M1 olfactory receptor, family 4, subfamily M, member 1 479622 2 2 2 0 0 1 0 1 0 0 0.075 0.80 -1626 GNPTAB N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits 1893138 4 4 4 0 1 0 1 1 1 0 0.075 0.80 -1627 EXT1 exostoses (multiple) 1 1158495 3 3 3 0 0 0 1 0 2 0 0.075 0.80 -1628 FHL1 four and a half LIM domains 1 567333 2 2 2 0 1 0 0 0 1 0 0.075 0.80 -1629 LRIT2 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 844155 3 3 3 0 1 2 0 0 0 0 0.075 0.80 -1630 IFT140 intraflagellar transport 140 homolog (Chlamydomonas) 1522014 3 3 3 0 0 2 0 0 1 0 0.075 0.80 -1631 CHCHD6 coiled-coil-helix-coiled-coil-helix domain containing 6 215982 1 1 1 0 0 1 0 0 0 0 0.075 0.80 -1632 CHST3 carbohydrate (chondroitin 6) sulfotransferase 3 194181 1 1 1 1 0 0 0 0 1 0 0.076 0.80 -1633 UQCRC1 ubiquinol-cytochrome c reductase core protein I 690027 2 2 2 0 0 0 0 1 1 0 0.076 0.80 -1634 FTL ferritin, light polypeptide 275808 1 1 1 0 0 1 0 0 0 0 0.076 0.80 -1635 STAU2 staufen, RNA binding protein, homolog 2 (Drosophila) 750360 2 2 2 0 0 1 0 0 1 0 0.076 0.80 -1636 COL14A1 collagen, type XIV, alpha 1 2828553 6 6 6 2 2 1 2 1 0 0 0.076 0.80 -1637 SNTG2 syntrophin, gamma 2 619047 2 2 2 2 1 0 0 1 0 0 0.076 0.80 -1638 MFSD11 major facilitator superfamily domain containing 11 710814 2 2 2 1 0 0 1 0 1 0 0.076 0.80 -1639 NLRP5 NLR family, pyrin domain containing 5 1662453 4 4 4 2 1 3 0 0 0 0 0.076 0.80 -1640 CLEC6A C-type lectin domain family 6, member A 331578 1 1 1 0 0 0 0 0 1 0 0.076 0.80 -1641 EIF4A2 eukaryotic translation initiation factor 4A, isoform 2 642876 3 2 3 0 0 0 0 2 1 0 0.076 0.80 -1642 TMEM110 transmembrane protein 110 381771 1 1 1 0 0 0 0 0 1 0 0.076 0.80 -1643 B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 280371 1 1 1 1 0 0 1 0 0 0 0.076 0.80 -1644 CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta 724503 2 2 2 0 1 1 0 0 0 0 0.076 0.80 -1645 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 639834 2 2 2 0 0 1 0 0 1 0 0.076 0.80 -1646 KCNQ3 potassium voltage-gated channel, KQT-like subfamily, member 3 1150890 3 3 3 1 1 0 2 0 0 0 0.076 0.80 -1647 TCF4 transcription factor 4 1058616 3 3 3 2 0 2 0 1 0 0 0.076 0.80 -1648 NXF3 nuclear RNA export factor 3 847704 3 3 3 0 0 0 3 0 0 0 0.076 0.80 -1649 CDK18 668226 2 2 2 0 1 0 0 0 1 0 0.076 0.80 -1650 OR13C4 olfactory receptor, family 13, subfamily C, member 4 487227 2 2 2 0 0 2 0 0 0 0 0.076 0.80 -1651 NKAPL NFKB activating protein-like 614991 2 2 2 0 0 2 0 0 0 0 0.076 0.80 -1652 SERPINA11 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 651495 2 2 2 0 0 0 0 0 2 0 0.076 0.80 -1653 SIM1 single-minded homolog 1 (Drosophila) 1126554 3 3 3 1 2 1 0 0 0 0 0.076 0.80 -1654 SESN2 sestrin 2 625638 2 2 2 0 0 0 1 0 1 0 0.076 0.80 -1655 COIL coilin 812721 2 2 2 0 0 0 0 0 2 0 0.077 0.80 -1656 DEPDC7 DEP domain containing 7 783315 2 2 2 0 0 0 0 1 1 0 0.077 0.80 -1657 CCL11 chemokine (C-C motif) ligand 11 155142 1 1 1 0 0 1 0 0 0 0 0.077 0.80 -1658 PRSS37 369096 1 1 1 0 0 1 0 0 0 0 0.077 0.80 -1659 HINT3 histidine triad nucleotide binding protein 3 184548 1 1 1 0 0 0 0 1 0 0 0.077 0.80 -1660 HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 1169649 3 3 3 0 1 0 1 0 1 0 0.077 0.80 -1661 RAB3IL1 RAB3A interacting protein (rabin3)-like 1 363519 1 1 1 0 0 0 0 1 0 0 0.077 0.80 -1662 FBXO41 F-box protein 41 707772 2 2 2 0 1 0 0 0 1 0 0.077 0.80 -1663 BCOR BCL6 co-repressor 2577588 5 5 5 1 0 4 0 1 0 0 0.077 0.80 -1664 RWDD3 RWD domain containing 3 378222 1 1 1 0 0 0 0 0 1 0 0.077 0.80 -1665 TECRL 548574 2 2 2 0 0 1 0 0 1 0 0.077 0.80 -1666 WDR33 WD repeat domain 33 2096952 5 5 5 0 2 0 2 0 1 0 0.077 0.80 -1667 KHSRP KH-type splicing regulatory protein 730587 2 2 2 0 0 0 1 0 1 0 0.077 0.80 -1668 PLD5 phospholipase D family, member 5 695097 2 2 2 1 0 2 0 0 0 0 0.077 0.80 -1669 LDLRAD2 low density lipoprotein receptor class A domain containing 2 203307 1 1 1 1 0 0 1 0 0 0 0.077 0.80 -1670 ZNF526 zinc finger protein 526 1022619 3 3 3 0 0 2 1 0 0 0 0.077 0.80 -1671 BRWD1 bromodomain and WD repeat domain containing 1 3635190 9 7 9 1 0 1 3 3 2 0 0.077 0.80 -1672 CCNB1 cyclin B1 678366 2 2 2 0 0 1 0 0 1 0 0.077 0.80 -1673 SPANXN4 SPANX family, member N4 156156 1 1 1 0 0 0 1 0 0 0 0.077 0.80 -1674 NDN necdin homolog (mouse) 353886 1 1 1 0 0 1 0 0 0 0 0.077 0.80 -1675 ALS2CL ALS2 C-terminal like 1156467 3 3 3 0 1 1 1 0 0 0 0.078 0.80 -1676 C12orf50 chromosome 12 open reading frame 50 655551 2 2 2 0 0 0 0 0 2 0 0.078 0.80 -1677 FAM22D family with sequence similarity 22, member D 568854 2 2 2 0 0 1 1 0 0 0 0.078 0.80 -1678 OR6X1 olfactory receptor, family 6, subfamily X, member 1 478101 2 2 2 0 0 1 1 0 0 0 0.078 0.80 -1679 RFX3 regulatory factor X, 3 (influences HLA class II expression) 1252290 3 3 3 0 0 1 0 1 1 0 0.078 0.80 -1680 BFSP1 beaded filament structural protein 1, filensin 747318 2 2 2 0 1 0 1 0 0 0 0.078 0.80 -1681 STX10 syntaxin 10 353379 1 1 1 1 0 0 0 0 1 0 0.078 0.80 -1682 RAB5C RAB5C, member RAS oncogene family 340197 1 1 1 0 0 0 0 0 1 0 0.078 0.80 -1683 C19orf10 chromosome 19 open reading frame 10 82641 1 1 1 0 1 0 0 0 0 0 0.078 0.80 -1684 CALB2 calbindin 2, 29kDa (calretinin) 386334 1 1 1 0 0 0 0 0 1 0 0.078 0.80 -1685 GMFG glia maturation factor, gamma 231699 1 1 1 0 0 0 1 0 0 0 0.078 0.80 -1686 THSD7B thrombospondin, type I, domain containing 7B 2370732 5 5 5 1 2 0 3 0 0 0 0.078 0.80 -1687 GLTSCR2 glioma tumor suppressor candidate region gene 2 365040 1 1 1 0 0 0 1 0 0 0 0.078 0.80 -1688 C2orf79 166296 1 1 1 0 1 0 0 0 0 0 0.078 0.80 -1689 OR56A1 olfactory receptor, family 56, subfamily A, member 1 487227 2 2 2 2 0 1 1 0 0 0 0.078 0.80 -1690 WNT6 wingless-type MMTV integration site family, member 6 167817 1 1 1 0 0 1 0 0 0 0 0.078 0.80 -1691 MAGEB4 melanoma antigen family B, 4 529815 2 2 2 2 1 0 0 1 0 0 0.078 0.80 -1692 KCNJ10 potassium inwardly-rectifying channel, subfamily J, member 10 580008 2 2 2 0 0 1 0 1 0 0 0.078 0.80 -1693 PLEKHF2 pleckstrin homology domain containing, family F (with FYVE domain) member 2 382278 1 1 1 1 0 0 0 0 1 0 0.078 0.80 -1694 BST2 bone marrow stromal cell antigen 2 283413 1 1 1 0 0 0 1 0 0 0 0.078 0.80 -1695 UBL4B ubiquitin-like 4B 202293 1 1 1 0 0 0 1 0 0 0 0.078 0.80 -1696 JTB jumping translocation breakpoint 233727 1 1 1 0 0 0 0 0 1 0 0.078 0.80 -1697 RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3 1235559 2 2 2 0 0 0 0 0 2 0 0.078 0.80 -1698 IL17RA interleukin 17 receptor A 479622 2 2 2 0 0 1 1 0 0 0 0.078 0.80 -1699 MUM1L1 melanoma associated antigen (mutated) 1-like 1 1022112 2 2 2 0 0 0 0 0 2 0 0.078 0.80 -1700 ARG1 arginase, liver 507507 2 2 2 0 0 1 0 1 0 0 0.078 0.80 -1701 C1orf85 chromosome 1 open reading frame 85 576459 2 2 2 0 0 1 0 0 1 0 0.079 0.80 -1702 PPP1R3A protein phosphatase 1, regulatory (inhibitor) subunit 3A 1716195 6 4 6 1 1 2 1 0 2 0 0.079 0.80 -1703 IL12A interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) 374166 1 1 1 0 0 0 0 0 1 0 0.079 0.80 -1704 BMP2K BMP2 inducible kinase 1726842 3 3 3 0 0 0 2 0 1 0 0.079 0.80 -1705 ALPI alkaline phosphatase, intestinal 589134 2 2 2 0 1 1 0 0 0 0 0.079 0.80 -1706 OR10H2 olfactory receptor, family 10, subfamily H, member 2 482664 2 2 2 0 1 1 0 0 0 0 0.079 0.80 -1707 LONRF1 LON peptidase N-terminal domain and ring finger 1 834015 3 3 3 0 1 2 0 0 0 0 0.079 0.80 -1708 CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6 656565 2 2 2 0 0 1 0 0 1 0 0.079 0.80 -1709 GJB3 gap junction protein, beta 3, 31kDa 414219 2 2 2 0 2 0 0 0 0 0 0.079 0.80 -1710 ARHGAP29 Rho GTPase activating protein 29 1964118 5 5 5 0 1 1 1 0 2 0 0.079 0.80 -1711 ACSM5 acyl-CoA synthetase medium-chain family member 5 908544 3 3 3 0 1 1 0 0 1 0 0.080 0.80 -1712 HDDC2 HD domain containing 2 279357 1 1 1 0 0 1 0 0 0 0 0.080 0.80 -1713 FAM20A family with sequence similarity 20, member A 582036 2 2 2 1 1 0 1 0 0 0 0.080 0.80 -1714 C7orf11 chromosome 7 open reading frame 11 103935 1 1 1 0 0 0 1 0 0 0 0.080 0.80 -1715 PTPN5 protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 842634 2 2 2 0 0 1 0 0 1 0 0.080 0.80 -1716 C18orf55 chromosome 18 open reading frame 55 390897 1 1 1 0 0 0 0 0 1 0 0.080 0.80 -1717 TINAG tubulointerstitial nephritis antigen 747825 2 2 2 0 1 0 0 0 1 0 0.080 0.80 -1718 ORMDL3 ORM1-like 3 (S. cerevisiae) 240318 1 1 1 0 0 1 0 0 0 0 0.080 0.80 -1719 PLXNA1 plexin A1 1951443 3 3 3 3 0 1 0 0 2 0 0.080 0.80 -1720 ORM1 orosomucoid 1 318903 1 1 1 0 0 0 0 0 1 0 0.080 0.81 -1721 NBEAL2 neurobeachin-like 2 2430051 5 5 4 0 0 0 2 2 1 0 0.080 0.81 -1722 GCH1 GTP cyclohydrolase 1 (dopa-responsive dystonia) 269724 1 1 1 0 0 1 0 0 0 0 0.080 0.81 -1723 PJA2 praja 2, RING-H2 motif containing 1096641 3 3 3 0 0 1 2 0 0 0 0.080 0.81 -1724 KCNH7 potassium voltage-gated channel, subfamily H (eag-related), member 7 1886547 4 4 4 0 2 0 0 0 2 0 0.080 0.81 -1725 NID1 nidogen 1 1772472 4 4 4 2 0 1 2 0 1 0 0.081 0.81 -1726 CDH10 cadherin 10, type 2 (T2-cadherin) 1222377 3 3 3 1 1 1 0 0 1 0 0.081 0.81 -1727 C3orf22 chromosome 3 open reading frame 22 221052 1 1 1 0 0 1 0 0 0 0 0.081 0.81 -1728 FASTKD3 FAST kinase domains 3 1020591 3 3 3 0 1 1 0 0 1 0 0.081 0.81 -1729 LGALS12 lectin, galactoside-binding, soluble, 12 (galectin 12) 532350 2 2 2 0 0 1 1 0 0 0 0.081 0.81 -1730 CD79A CD79a molecule, immunoglobulin-associated alpha 235248 1 1 1 0 0 0 0 0 1 0 0.081 0.81 -1731 FOXM1 forkhead box M1 1238094 3 3 2 1 0 1 0 2 0 0 0.081 0.81 -1732 CEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) 534885 2 2 2 0 1 1 0 0 0 0 0.081 0.81 -1733 ALG1L 291018 1 1 1 0 0 1 0 0 0 0 0.081 0.81 -1734 NRP2 neuropilin 2 1610232 4 4 4 0 1 1 1 0 1 0 0.081 0.81 -1735 GABRG1 gamma-aminobutyric acid (GABA) A receptor, gamma 1 727038 2 2 2 1 1 0 1 0 0 0 0.082 0.81 -1736 IL1F5 interleukin 1 family, member 5 (delta) 245388 1 1 1 0 0 1 0 0 0 0 0.082 0.81 -1737 DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 1319721 3 3 3 0 0 1 1 1 0 0 0.082 0.81 -1738 GPR139 G protein-coupled receptor 139 476073 2 2 2 0 0 1 1 0 0 0 0.082 0.81 -1739 IGFL4 IGF-like family member 4 198237 1 1 1 0 0 0 0 0 1 0 0.082 0.81 -1740 FABP4 fatty acid binding protein 4, adipocyte 210405 1 1 1 0 0 0 0 0 1 0 0.082 0.81 -1741 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 456807 2 2 2 0 1 1 0 0 0 0 0.082 0.81 -1742 MTHFS 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) 255021 1 1 1 1 0 0 0 1 0 0 0.082 0.81 -1743 ZNF829 zinc finger protein 829 711321 2 2 2 0 0 0 0 0 2 0 0.082 0.81 -1744 IRF9 interferon regulatory factor 9 615498 2 2 2 0 0 1 0 0 1 0 0.082 0.81 -1745 PRKCB 1139229 3 3 3 0 1 2 0 0 0 0 0.082 0.81 -1746 C11orf1 chromosome 11 open reading frame 1 237783 1 1 1 0 0 1 0 0 0 0 0.082 0.81 -1747 ZNF77 zinc finger protein 77 835029 2 2 2 0 0 0 1 1 0 0 0.082 0.81 -1748 WNT9A wingless-type MMTV integration site family, member 9A 340704 1 1 1 0 0 1 0 0 0 0 0.082 0.81 -1749 C1orf130 chromosome 1 open reading frame 130 162747 1 1 1 0 0 0 0 1 0 0 0.082 0.81 -1750 PXDN peroxidasin homolog (Drosophila) 1677156 3 3 3 1 1 0 0 0 2 0 0.082 0.81 -1751 ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa 438555 2 2 2 0 2 0 0 0 0 0 0.082 0.81 -1752 OR7A17 olfactory receptor, family 7, subfamily A, member 17 473538 2 2 2 1 0 0 2 0 0 0 0.082 0.81 -1753 MFN1 mitofusin 1 1163058 3 3 3 0 0 0 1 1 1 0 0.082 0.81 -1754 SNRPB small nuclear ribonucleoprotein polypeptides B and B1 388362 1 1 1 0 0 0 0 0 1 0 0.082 0.81 -1755 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) 233220 1 1 1 0 0 0 0 0 1 0 0.083 0.81 -1756 PTPN12 protein tyrosine phosphatase, non-receptor type 12 1172184 3 3 3 0 0 1 2 0 0 0 0.083 0.81 -1757 OR52D1 olfactory receptor, family 52, subfamily D, member 1 487227 2 2 2 0 0 1 1 0 0 0 0.083 0.81 -1758 CMTM5 CKLF-like MARVEL transmembrane domain containing 5 248937 1 1 1 0 0 1 0 0 0 0 0.083 0.81 -1759 CATSPER2 cation channel, sperm associated 2 851760 2 2 2 2 0 0 0 1 1 0 0.083 0.81 -1760 SLC39A14 solute carrier family 39 (zinc transporter), member 14 766077 2 2 2 0 0 0 1 0 1 0 0.083 0.81 -1761 TRPV2 transient receptor potential cation channel, subfamily V, member 2 1114893 3 3 3 2 0 1 1 0 1 0 0.083 0.82 -1762 THEG Theg homolog (mouse) 287469 1 1 1 0 0 0 0 1 0 0 0.083 0.82 -1763 HLA-DMB major histocompatibility complex, class II, DM beta 413712 2 2 2 0 0 1 1 0 0 0 0.083 0.82 -1764 C19orf43 chromosome 19 open reading frame 43 98358 1 1 1 0 0 1 0 0 0 0 0.083 0.82 -1765 MAOA monoamine oxidase A 803595 2 2 2 0 0 0 1 0 1 0 0.083 0.82 -1766 C14orf73 chromosome 14 open reading frame 73 317889 1 1 1 0 0 1 0 0 0 0 0.084 0.82 -1767 HAS3 hyaluronan synthase 3 855816 2 2 2 0 0 0 1 0 1 0 0.084 0.82 -1768 BZW1 basic leucine zipper and W2 domains 1 524745 2 2 2 0 1 0 0 1 0 0 0.084 0.82 -1769 VPS37B vacuolar protein sorting 37 homolog B (S. cerevisiae) 285948 1 1 1 0 0 0 1 0 0 0 0.084 0.82 -1770 STYXL1 serine/threonine/tyrosine interacting-like 1 493818 2 2 2 0 0 1 0 1 0 0 0.084 0.82 -1771 ZNRF4 zinc and ring finger 4 656058 2 2 2 2 0 2 0 0 0 0 0.084 0.82 -1772 TTC5 tetratricopeptide repeat domain 5 691041 2 2 2 0 0 1 1 0 0 0 0.084 0.82 -1773 DDX55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 885729 3 3 3 0 0 1 2 0 0 0 0.084 0.82 -1774 SCHIP1 schwannomin interacting protein 1 403572 1 1 1 0 0 0 0 0 1 0 0.084 0.82 -1775 MYBBP1A MYB binding protein (P160) 1a 1400334 3 3 3 0 0 0 1 1 1 0 0.084 0.82 -1776 C14orf174 chromosome 14 open reading frame 174 1032759 3 3 3 0 1 0 2 0 0 0 0.084 0.82 -1777 CCDC83 coiled-coil domain containing 83 699153 2 2 2 0 1 0 0 0 1 0 0.084 0.82 -1778 ZNF705D zinc finger protein 705D 152100 1 1 1 0 0 1 0 0 0 0 0.084 0.82 -1779 MFSD8 major facilitator superfamily domain containing 8 757458 2 2 2 0 1 0 1 0 0 0 0.084 0.82 -1780 NGEF neuronal guanine nucleotide exchange factor 721461 2 2 2 2 0 1 0 0 1 0 0.084 0.82 -1781 TMEM47 transmembrane protein 47 166296 1 1 1 1 0 0 0 0 1 0 0.085 0.82 -1782 SCFD2 sec1 family domain containing 2 1048983 3 3 3 1 2 0 1 0 0 0 0.085 0.82 -1783 C10orf96 chromosome 10 open reading frame 96 410163 2 2 2 0 1 1 0 0 0 0 0.085 0.82 -1784 RUFY1 RUN and FYVE domain containing 1 953667 2 2 2 0 0 0 1 0 1 0 0.085 0.82 -1785 METTL8 methyltransferase like 8 409149 2 2 2 0 1 0 1 0 0 0 0.085 0.82 -1786 EGFR epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) 1978314 4 4 4 1 0 1 0 3 0 0 0.085 0.82 -1787 ZC3H12B zinc finger CCCH-type containing 12B 1283217 3 3 3 0 2 0 1 0 0 0 0.085 0.82 -1788 GYLTL1B glycosyltransferase-like 1B 863421 2 2 2 0 0 0 1 0 1 0 0.085 0.82 -1789 CCDC144NL 239811 1 1 1 0 0 0 0 0 1 0 0.085 0.82 -1790 KRTAP5-10 keratin associated protein 5-10 310791 1 1 1 1 0 0 0 1 0 0 0.085 0.82 -1791 DMC1 DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) 545025 2 2 2 0 0 1 0 0 1 0 0.085 0.82 -1792 MX2 myxovirus (influenza virus) resistance 2 (mouse) 1115400 3 3 3 0 0 1 1 0 1 0 0.085 0.82 -1793 MYO1C myosin IC 816777 2 2 1 0 0 0 2 0 0 0 0.085 0.82 -1794 PRKAG3 protein kinase, AMP-activated, gamma 3 non-catalytic subunit 757458 2 2 2 0 0 0 0 2 0 0 0.085 0.82 -1795 MIF4GD MIF4G domain containing 403065 1 1 1 0 0 0 0 0 1 0 0.085 0.82 -1796 CHAF1A chromatin assembly factor 1, subunit A (p150) 1377519 3 3 3 1 1 0 0 2 0 0 0.085 0.82 -1797 TSPAN33 tetraspanin 33 394446 1 1 1 0 0 0 0 0 1 0 0.085 0.82 -1798 DYTN dystrotelin 904995 3 3 3 1 0 2 1 0 0 0 0.086 0.82 -1799 GGCT 295581 1 1 1 0 0 0 0 0 1 0 0.086 0.82 -1800 PLS3 plastin 3 (T isoform) 990171 4 3 4 0 2 1 0 1 0 0 0.086 0.82 -1801 MFGE8 milk fat globule-EGF factor 8 protein 560235 2 2 2 0 2 0 0 0 0 0 0.086 0.82 -1802 PTK7 PTK7 protein tyrosine kinase 7 1586910 4 4 4 1 2 2 0 0 0 0 0.086 0.82 -1803 C10orf128 chromosome 10 open reading frame 128 173394 1 1 1 0 0 0 1 0 0 0 0.086 0.82 -1804 PSMD6 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 533871 2 2 2 0 0 1 1 0 0 0 0.086 0.82 -1805 VILL villin-like 1142271 3 3 3 1 1 1 0 0 1 0 0.086 0.82 -1806 ITGB3BP integrin beta 3 binding protein (beta3-endonexin) 286962 1 1 1 1 0 1 0 0 0 0 0.086 0.82 -1807 PHTF2 putative homeodomain transcription factor 2 1205139 3 3 3 0 0 1 0 0 2 0 0.086 0.82 -1808 RXFP1 relaxin/insulin-like family peptide receptor 1 1189422 3 3 3 0 0 1 1 0 1 0 0.086 0.82 -1809 LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 166296 1 1 1 0 0 0 0 0 1 0 0.086 0.82 -1810 NUP153 nucleoporin 153kDa 2262741 5 5 5 1 0 3 2 0 0 0 0.086 0.82 -1811 TRMT61B 738699 2 2 2 0 0 1 0 0 1 0 0.086 0.82 -1812 NEUROD6 neurogenic differentiation 6 516126 2 2 2 0 0 0 1 1 0 0 0.086 0.82 -1813 ANKLE1 ankyrin repeat and LEM domain containing 1 707265 2 2 1 1 2 0 0 0 0 0 0.086 0.82 -1814 IRF2BP2 interferon regulatory factor 2 binding protein 2 365040 1 1 1 0 0 0 0 0 1 0 0.086 0.82 -1815 LTBP2 latent transforming growth factor beta binding protein 2 2383407 5 5 5 2 1 2 1 0 1 0 0.086 0.82 -1816 KLHL21 kelch-like 21 (Drosophila) 326001 1 1 1 0 0 1 0 0 0 0 0.086 0.82 -1817 C1orf198 chromosome 1 open reading frame 198 323466 1 1 1 0 0 0 1 0 0 0 0.086 0.82 -1818 SDC4 syndecan 4 280371 1 1 1 0 0 0 1 0 0 0 0.086 0.82 -1819 PCSK9 proprotein convertase subtilisin/kexin type 9 681915 2 2 1 0 0 0 0 0 2 0 0.086 0.82 -1820 FAM83E family with sequence similarity 83, member E 463905 2 2 2 1 0 1 0 1 0 0 0.086 0.82 -1821 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 867984 2 2 2 0 0 0 1 0 1 0 0.087 0.82 -1822 TTBK1 tau tubulin kinase 1 1351662 3 3 3 2 0 2 1 0 0 0 0.087 0.82 -1823 CD83 CD83 molecule 241839 1 1 1 1 1 0 0 0 0 0 0.087 0.82 -1824 PQBP1 polyglutamine binding protein 1 416754 2 1 2 0 1 0 0 0 1 0 0.087 0.82 -1825 MYH7B myosin, heavy chain 7B, cardiac muscle, beta 2415855 5 5 5 3 0 3 1 0 1 0 0.087 0.82 -1826 SELP selectin P (granule membrane protein 140kDa, antigen CD62) 1296399 3 3 3 0 2 0 1 0 0 0 0.087 0.82 -1827 DCT dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2) 837564 2 2 2 0 0 1 0 0 1 0 0.087 0.82 -1828 HIPK2 homeodomain interacting protein kinase 2 1572714 4 4 4 0 1 0 2 0 1 0 0.087 0.82 -1829 TIA1 TIA1 cytotoxic granule-associated RNA binding protein 614991 2 2 2 0 1 0 0 0 1 0 0.087 0.82 -1830 TTYH1 tweety homolog 1 (Drosophila) 534378 2 2 2 2 1 1 0 0 0 0 0.087 0.82 -1831 TSPYL2 TSPY-like 2 757965 2 2 2 0 0 0 1 1 0 0 0.087 0.82 -1832 DNAJC2 980538 2 2 2 0 0 0 0 1 1 0 0.087 0.82 -1833 CBR3 carbonyl reductase 3 280371 1 1 1 0 0 1 0 0 0 0 0.087 0.82 -1834 FGFBP2 fibroblast growth factor binding protein 2 342732 1 1 1 0 0 1 0 0 0 0 0.087 0.82 -1835 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 (aggrecanase-2) 1092078 2 2 2 2 0 0 1 0 1 0 0.087 0.82 -1836 PITX2 paired-like homeodomain 2 401544 1 1 1 0 0 0 0 0 1 0 0.087 0.82 -1837 FABP6 fatty acid binding protein 6, ileal (gastrotropin) 282906 1 1 1 0 0 0 1 0 0 0 0.087 0.82 -1838 CLEC10A C-type lectin domain family 10, member A 502944 2 2 2 0 0 1 1 0 0 0 0.087 0.82 -1839 TPPP tubulin polymerization promoting protein 122187 1 1 1 0 0 1 0 0 0 0 0.087 0.82 -1840 THBS1 thrombospondin 1 1822665 3 3 3 1 0 1 0 1 1 0 0.087 0.82 -1841 CTGF connective tissue growth factor 391911 1 1 1 0 0 1 0 0 0 0 0.087 0.82 -1842 KIF13A kinesin family member 13A 2745405 7 6 7 1 2 1 1 2 1 0 0.087 0.82 -1843 KCNA7 potassium voltage-gated channel, shaker-related subfamily, member 7 415233 1 1 1 0 0 0 0 0 1 0 0.088 0.82 -1844 ZCCHC2 zinc finger, CCHC domain containing 2 1255332 3 3 3 2 2 0 1 0 0 0 0.088 0.82 -1845 IL13RA2 interleukin 13 receptor, alpha 2 597753 2 2 2 1 1 0 0 1 0 0 0.088 0.82 -1846 AGFG2 642876 2 2 2 0 0 0 1 0 1 0 0.088 0.82 -1847 OR5M1 olfactory receptor, family 5, subfamily M, member 1 482664 2 2 2 1 0 1 1 0 0 0 0.088 0.82 -1848 KRT25 keratin 25 702195 2 2 2 1 1 1 0 0 0 0 0.088 0.82 -1849 SLCO3A1 solute carrier organic anion transporter family, member 3A1 854295 2 2 2 0 0 2 0 0 0 0 0.088 0.82 -1850 KRTAP24-1 keratin associated protein 24-1 389883 1 1 1 0 0 0 0 0 1 0 0.088 0.82 -1851 CNTN1 contactin 1 1596543 4 4 4 3 1 2 1 0 0 0 0.088 0.82 -1852 SEC14L5 SEC14-like 5 (S. cerevisiae) 555165 2 2 2 1 0 1 0 0 1 0 0.088 0.82 -1853 GALNT10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) 860379 2 2 2 0 0 1 1 0 0 0 0.088 0.82 -1854 RBM23 RNA binding motif protein 23 669240 2 2 2 0 0 1 1 0 0 0 0.088 0.82 -1855 SFMBT1 Scm-like with four mbt domains 1 1359267 3 3 3 0 0 1 0 1 1 0 0.088 0.82 -1856 RPL36 ribosomal protein L36 116610 1 1 1 0 0 0 0 1 0 0 0.088 0.82 -1857 FRG1 FSHD region gene 1 378729 1 1 1 0 0 0 0 1 0 0 0.088 0.82 -1858 ATXN3L ataxin 3-like 543504 2 2 2 0 1 1 0 0 0 0 0.088 0.82 -1859 S1PR5 190125 1 1 1 1 0 1 0 0 0 0 0.088 0.82 -1860 MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 1946880 5 4 5 1 1 2 0 1 1 0 0.089 0.82 -1861 LHX9 LIM homeobox 9 631722 2 2 2 1 1 0 1 0 0 0 0.089 0.82 -1862 MAGED2 melanoma antigen family D, 2 875082 2 2 2 0 0 1 0 0 1 0 0.089 0.82 -1863 RWDD2A RWD domain containing 2A 449709 2 2 2 0 1 0 1 0 0 0 0.089 0.82 -1864 ARF1 ADP-ribosylation factor 1 284934 1 1 1 0 1 0 0 0 0 0 0.089 0.82 -1865 INTU inturned planar cell polarity effector homolog (Drosophila) 1466751 4 4 4 0 0 2 2 0 0 0 0.089 0.82 -1866 MAMSTR 319410 1 1 1 0 0 1 0 0 0 0 0.089 0.82 -1867 CCDC66 coiled-coil domain containing 66 1346592 3 3 3 0 0 1 1 0 1 0 0.089 0.82 -1868 EIF4A3 eukaryotic translation initiation factor 4A, isoform 3 607893 2 2 2 0 0 1 1 0 0 0 0.089 0.82 -1869 MATN4 matrilin 4 885729 2 2 2 0 1 0 0 0 1 0 0.089 0.83 -1870 CYTSB 1621386 3 3 3 0 0 2 0 0 1 0 0.089 0.83 -1871 C1orf226 424866 1 1 1 0 0 0 0 0 1 0 0.089 0.83 -1872 C1orf187 chromosome 1 open reading frame 187 400023 1 1 1 0 0 0 0 0 1 0 0.089 0.83 -1873 MEST mesoderm specific transcript homolog (mouse) 520182 2 2 2 0 0 0 1 0 1 0 0.090 0.83 -1874 HYLS1 hydrolethalus syndrome 1 458328 2 2 2 0 0 1 1 0 0 0 0.090 0.83 -1875 TRIM38 tripartite motif-containing 38 720954 2 2 2 0 0 1 0 1 0 0 0.090 0.83 -1876 LCTL lactase-like 890292 2 2 2 0 0 0 1 0 1 0 0.090 0.83 -1877 LMAN2 lectin, mannose-binding 2 466947 2 2 2 0 0 1 0 1 0 0 0.090 0.83 -1878 ZSCAN16 zinc finger and SCAN domain containing 16 536913 2 2 2 0 1 0 0 1 0 0 0.090 0.83 -1879 TXNDC11 thioredoxin domain containing 11 1352169 3 3 3 0 0 3 0 0 0 0 0.090 0.83 -1880 SLAMF9 SLAM family member 9 449202 2 2 2 1 0 0 2 0 0 0 0.090 0.83 -1881 SOBP sine oculis binding protein homolog (Drosophila) 819312 2 2 2 0 0 1 0 0 1 0 0.090 0.83 -1882 TK2 thymidine kinase 2, mitochondrial 359970 1 1 1 0 0 0 1 0 0 0 0.090 0.83 -1883 SLC12A4 solute carrier family 12 (potassium/chloride transporters), member 4 1191450 2 2 2 0 0 0 0 1 1 0 0.090 0.83 -1884 FBXL19 F-box and leucine-rich repeat protein 19 601809 2 2 2 0 1 1 0 0 0 0 0.090 0.83 -1885 BCKDK branched chain ketoacid dehydrogenase kinase 550602 2 2 2 0 0 1 0 0 1 0 0.090 0.83 -1886 NUTF2 nuclear transport factor 2 202800 1 1 1 0 0 1 0 0 0 0 0.090 0.83 -1887 PHLDB3 pleckstrin homology-like domain, family B, member 3 807144 2 2 2 0 1 0 0 0 1 0 0.090 0.83 -1888 ZNF506 zinc finger protein 506 684957 2 2 2 1 0 0 2 0 0 0 0.090 0.83 -1889 RPS27 ribosomal protein S27 (metallopanstimulin 1) 89739 1 1 1 0 0 0 1 0 0 0 0.090 0.83 -1890 BRIP1 BRCA1 interacting protein C-terminal helicase 1 1939782 4 4 4 3 0 0 2 0 2 0 0.090 0.83 -1891 GTF2F2 general transcription factor IIF, polypeptide 2, 30kDa 360984 1 1 1 1 0 1 0 0 0 0 0.090 0.83 -1892 B3GNT1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 350844 1 1 1 0 1 0 0 0 0 0 0.091 0.83 -1893 GSPT2 G1 to S phase transition 2 882180 2 2 2 1 0 0 0 2 0 0 0.091 0.83 -1894 DEFB1 defensin, beta 1 109005 1 1 1 0 0 1 0 0 0 0 0.091 0.83 -1895 OR5H1 olfactory receptor, family 5, subfamily H, member 1 479622 2 2 2 2 0 0 2 0 0 0 0.091 0.83 -1896 PFKM phosphofructokinase, muscle 1344564 3 3 3 1 1 0 0 1 1 0 0.091 0.83 -1897 OSTBETA 151086 1 1 1 0 1 0 0 0 0 0 0.091 0.83 -1898 PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 1033773 2 2 2 4 0 1 0 0 1 0 0.091 0.83 -1899 MCOLN3 mucolipin 3 866970 2 2 2 0 0 0 0 2 0 0 0.091 0.83 -1900 DEFB114 defensin, beta 114 110526 1 1 1 0 0 1 0 0 0 0 0.091 0.83 -1901 HIST1H2AL histone cluster 1, H2al 201279 1 1 1 0 0 0 1 0 0 0 0.091 0.83 -1902 SNAP25 synaptosomal-associated protein, 25kDa 352365 1 1 1 0 0 0 0 1 0 0 0.091 0.83 -1903 CDC37L1 cell division cycle 37 homolog (S. cerevisiae)-like 1 518154 2 2 2 0 1 0 1 0 0 0 0.091 0.83 -1904 BLM Bloom syndrome 2199366 6 5 6 1 0 4 0 0 2 0 0.091 0.83 -1905 LZTR1 leucine-zipper-like transcription regulator 1 822354 2 2 2 0 0 1 0 0 1 0 0.091 0.83 -1906 HNRNPCL1 449202 2 2 2 0 1 0 1 0 0 0 0.091 0.83 -1907 GPR77 G protein-coupled receptor 77 516126 2 2 2 0 0 1 1 0 0 0 0.092 0.83 -1908 C1orf210 chromosome 1 open reading frame 210 177450 1 1 1 0 0 0 1 0 0 0 0.092 0.83 -1909 OR10H1 olfactory receptor, family 10, subfamily H, member 1 487227 2 2 2 0 1 0 1 0 0 0 0.092 0.83 -1910 SEC24B SEC24 related gene family, member B (S. cerevisiae) 1909362 4 4 4 2 0 0 2 1 1 0 0.092 0.83 -1911 PCDHA6 protocadherin alpha 6 1395771 3 3 3 2 0 3 0 0 0 0 0.092 0.83 -1912 SPN sialophorin (leukosialin, CD43) 448188 2 2 1 0 0 0 1 0 1 0 0.092 0.83 -1913 SRPRB signal recognition particle receptor, B subunit 378222 1 1 1 0 0 0 0 0 1 0 0.092 0.83 -1914 OR56A4 olfactory receptor, family 56, subfamily A, member 4 558714 2 2 2 0 1 0 0 0 1 0 0.092 0.83 -1915 GPR84 G protein-coupled receptor 84 605865 2 2 2 0 1 0 0 1 0 0 0.092 0.83 -1916 VPS28 vacuolar protein sorting 28 homolog (S. cerevisiae) 298623 1 1 1 0 0 1 0 0 0 0 0.092 0.83 -1917 ARHGAP28 Rho GTPase activating protein 28 973440 3 3 3 1 0 1 1 1 0 0 0.092 0.83 -1918 MRFAP1L1 Morf4 family associated protein 1-like 1 196716 1 1 1 1 0 1 0 0 0 0 0.092 0.83 -1919 LGALS4 lectin, galactoside-binding, soluble, 4 (galectin 4) 513084 2 2 2 1 1 1 0 0 0 0 0.092 0.83 -1920 FSHR follicle stimulating hormone receptor 1078896 3 3 3 0 0 1 1 0 1 0 0.092 0.83 -1921 PTCHD3 patched domain containing 3 1090557 3 3 3 0 0 1 1 1 0 0 0.092 0.83 -1922 ETV1 ets variant gene 1 754923 2 2 2 0 0 1 1 0 0 0 0.092 0.83 -1923 SLC25A39 solute carrier family 25, member 39 394953 1 1 1 0 0 0 0 0 1 0 0.092 0.83 -1924 PAQR9 progestin and adipoQ receptor family member IX 192153 1 1 1 2 0 0 0 1 0 0 0.092 0.83 -1925 RPAP2 RNA polymerase II associated protein 2 919698 2 2 2 2 0 1 0 0 1 0 0.092 0.83 -1926 ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 423345 1 1 1 1 0 0 0 0 1 0 0.092 0.83 -1927 ITK IL2-inducible T-cell kinase 979017 3 3 3 1 0 3 0 0 0 0 0.092 0.83 -1928 SDF4 stromal cell derived factor 4 294567 1 1 1 0 0 0 0 0 1 0 0.092 0.83 -1929 BCAT2 branched chain aminotransferase 2, mitochondrial 520689 2 2 2 1 0 2 0 0 0 0 0.092 0.83 -1930 UBE2Z ubiquitin-conjugating enzyme E2Z 391404 1 1 1 0 0 0 1 0 0 0 0.093 0.83 -1931 PRODH2 proline dehydrogenase (oxidase) 2 679380 2 2 2 1 0 0 2 0 0 0 0.093 0.83 -1932 CDK11A 479622 2 2 2 0 1 1 0 0 0 0 0.093 0.83 -1933 APOA5 apolipoprotein A-V 437541 1 1 1 0 0 0 0 0 1 0 0.093 0.83 -1934 TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 2951247 6 6 6 0 2 2 1 0 1 0 0.093 0.83 -1935 LHB luteinizing hormone beta polypeptide 222066 1 1 1 0 0 0 1 0 0 0 0.093 0.83 -1936 PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 6450054 12 12 12 4 3 1 4 1 3 0 0.093 0.83 -1937 SLC26A6 solute carrier family 26, member 6 853281 2 2 2 0 0 0 1 0 1 0 0.093 0.83 -1938 FAM122C family with sequence similarity 122C 327522 1 1 1 0 0 1 0 0 0 0 0.093 0.83 -1939 NODAL nodal homolog (mouse) 435513 1 1 1 0 0 0 0 0 1 0 0.093 0.83 -1940 C19orf63 chromosome 19 open reading frame 63 225108 1 1 1 0 0 1 0 0 0 0 0.093 0.83 -1941 ZNF711 zinc finger protein 711 1173198 3 3 3 0 2 1 0 0 0 0 0.094 0.83 -1942 DNTT deoxynucleotidyltransferase, terminal 798018 2 2 2 1 0 1 1 0 0 0 0.094 0.83 -1943 TMEM44 transmembrane protein 44 342732 1 1 1 0 0 0 1 0 0 0 0.094 0.83 -1944 RGAG1 retrotransposon gag domain containing 1 2116725 5 5 5 0 2 1 0 2 0 0 0.094 0.83 -1945 ZNF687 zinc finger protein 687 1753206 3 3 3 1 0 1 0 1 1 0 0.094 0.83 -1946 FGF13 fibroblast growth factor 13 514605 2 2 2 0 1 1 0 0 0 0 0.094 0.83 -1947 KCND1 potassium voltage-gated channel, Shal-related subfamily, member 1 874575 2 2 2 1 0 0 1 0 1 0 0.094 0.83 -1948 KCNK2 potassium channel, subfamily K, member 2 685464 2 2 2 0 0 0 0 1 1 0 0.094 0.83 -1949 CASP8 caspase 8, apoptosis-related cysteine peptidase 888771 2 2 2 0 0 0 1 0 1 0 0.094 0.83 -1950 HTR1E 5-hydroxytryptamine (serotonin) receptor 1E 558714 2 2 2 0 1 0 0 0 1 0 0.094 0.83 -1951 PRAMEF2 PRAME family member 2 728559 2 2 2 0 0 1 0 1 0 0 0.094 0.83 -1952 PPAPDC1A phosphatidic acid phosphatase type 2 domain containing 1A 397488 1 1 1 1 0 0 0 0 1 0 0.095 0.83 -1953 C10orf32 chromosome 10 open reading frame 32 132834 1 1 1 0 1 0 0 0 0 0 0.095 0.83 -1954 TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) 407628 1 1 1 0 0 1 0 0 0 0 0.095 0.83 -1955 ILK integrin-linked kinase 666198 2 2 2 0 0 1 0 0 1 0 0.095 0.83 -1956 BDKRB1 bradykinin receptor B1 540462 2 2 2 0 1 0 1 0 0 0 0.095 0.83 -1957 CCL13 chemokine (C-C motif) ligand 13 156663 1 1 1 1 1 0 0 0 0 0 0.095 0.83 -1958 MRPL52 mitochondrial ribosomal protein L52 187590 1 1 1 0 0 1 0 0 0 0 0.095 0.83 -1959 TGFBI transforming growth factor, beta-induced, 68kDa 990171 3 3 3 1 1 1 1 0 0 0 0.095 0.83 -1960 ZNF233 zinc finger protein 233 1028703 3 3 3 0 2 0 0 0 1 0 0.095 0.83 -1961 SNRNP35 387348 1 1 1 1 0 1 0 0 0 0 0.095 0.83 -1962 C22orf33 chromosome 22 open reading frame 33 315354 1 1 1 0 0 0 0 0 1 0 0.095 0.83 -1963 SLC24A6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 867984 2 2 2 2 0 1 0 0 1 0 0.095 0.83 -1964 RNF43 ring finger protein 43 1203618 3 3 3 0 0 2 0 0 1 0 0.095 0.84 -1965 PPP1R3B protein phosphatase 1, regulatory (inhibitor) subunit 3B 437034 1 1 1 0 0 0 0 0 1 0 0.095 0.84 -1966 CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 748332 2 2 2 0 0 0 1 1 0 0 0.095 0.84 -1967 LCE2D late cornified envelope 2D 170859 1 1 1 0 0 1 0 0 0 0 0.095 0.84 -1968 METTL9 methyltransferase like 9 409656 1 1 1 0 0 0 1 0 0 0 0.095 0.84 -1969 NUP62 nucleoporin 62kDa 797511 2 2 2 0 0 1 1 0 0 0 0.095 0.84 -1970 DENND1B DENN/MADD domain containing 1B 1146834 3 3 3 0 0 1 2 0 0 0 0.095 0.84 -1971 ZBTB24 zinc finger and BTB domain containing 24 1099176 3 3 3 0 1 0 1 0 1 0 0.095 0.84 -1972 USP21 ubiquitin specific peptidase 21 885222 2 2 2 0 0 1 0 0 1 0 0.096 0.84 -1973 LMOD1 leiomodin 1 (smooth muscle) 920205 3 3 3 1 0 1 1 1 0 0 0.096 0.84 -1974 TM2D2 TM2 domain containing 2 281385 1 1 1 0 0 0 0 0 1 0 0.096 0.84 -1975 RAB3GAP2 RAB3 GTPase activating protein subunit 2 (non-catalytic) 2143596 5 5 5 0 0 1 4 0 0 0 0.096 0.84 -1976 ACTB actin, beta 549081 2 2 2 1 1 0 1 0 0 0 0.096 0.84 -1977 SPRYD4 SPRY domain containing 4 320424 1 1 1 0 0 0 1 0 0 0 0.096 0.84 -1978 LDOC1L leucine zipper, down-regulated in cancer 1-like 254514 1 1 1 0 0 0 0 0 1 0 0.096 0.84 -1979 METTL2A methyltransferase like 2A 433485 1 1 1 0 0 0 0 0 1 0 0.096 0.84 -1980 C19orf41 chromosome 19 open reading frame 41 318396 1 1 1 1 0 1 0 0 0 0 0.096 0.84 -1981 TXNDC8 thioredoxin domain containing 8 (spermatozoa) 188604 1 1 1 0 0 0 1 0 0 0 0.096 0.84 -1982 SNX7 sorting nexin 7 612456 2 2 2 0 1 0 0 0 1 0 0.096 0.84 -1983 KLHL35 306735 1 1 1 0 1 0 0 0 0 0 0.096 0.84 -1984 DEGS1 degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) 455286 2 2 2 0 1 1 0 0 0 0 0.096 0.84 -1985 NET1 neuroepithelial cell transforming gene 1 914628 3 3 3 0 2 1 0 0 0 0 0.096 0.84 -1986 TTC31 tetratricopeptide repeat domain 31 813228 2 2 2 0 0 1 1 0 0 0 0.096 0.84 -1987 PDE6G phosphodiesterase 6G, cGMP-specific, rod, gamma 139932 1 1 1 0 0 0 0 0 1 0 0.096 0.84 -1988 FSTL4 follistatin-like 4 1312623 3 3 3 1 1 1 1 0 0 0 0.097 0.84 -1989 TSC2 tuberous sclerosis 2 754923 2 2 2 0 0 1 1 0 0 0 0.097 0.84 -1990 TBC1D5 TBC1 domain family, member 5 1251276 3 3 3 0 0 1 1 0 1 0 0.097 0.84 -1991 PSEN2 presenilin 2 (Alzheimer disease 4) 676338 2 2 2 0 0 1 1 0 0 0 0.097 0.84 -1992 TRMT2B 792441 2 2 2 0 0 1 0 0 1 0 0.097 0.84 -1993 ACTR1A ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 595725 2 2 2 0 0 2 0 0 0 0 0.097 0.84 -1994 CA2 carbonic anhydrase II 391911 1 1 1 0 0 0 0 1 0 0 0.097 0.84 -1995 OR9G4 olfactory receptor, family 9, subfamily G, member 4 500916 2 2 2 1 0 0 2 0 0 0 0.097 0.84 -1996 ELANE 106977 1 1 1 1 0 1 0 0 0 0 0.097 0.84 -1997 ZNF649 zinc finger protein 649 777738 2 2 2 0 0 1 0 1 0 0 0.097 0.84 -1998 F5 coagulation factor V (proaccelerin, labile factor) 3434925 7 7 7 1 1 2 1 2 1 0 0.097 0.84 -1999 WFDC5 WAP four-disulfide core domain 5 196716 1 1 1 0 0 1 0 0 0 0 0.097 0.84 -2000 ZNF562 zinc finger protein 562 546039 2 2 2 0 0 0 2 0 0 0 0.097 0.84 -2001 FGF5 fibroblast growth factor 5 415233 1 1 1 0 0 0 0 1 0 0 0.097 0.84 -2002 PLA2G2F phospholipase A2, group IIF 271752 1 1 1 0 0 1 0 0 0 0 0.097 0.84 -2003 UNC13C unc-13 homolog C (C. elegans) 3418701 6 6 6 2 1 0 1 1 3 0 0.097 0.84 -2004 C20orf132 chromosome 20 open reading frame 132 1425177 4 3 4 0 0 0 2 1 1 0 0.097 0.84 -2005 ST6GALNAC4 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 382278 1 1 1 0 0 1 0 0 0 0 0.097 0.84 -2006 ZNF619 zinc finger protein 619 871533 2 2 2 0 0 0 1 0 1 0 0.097 0.84 -2007 NPPA natriuretic peptide precursor A 237276 1 1 1 0 0 0 0 1 0 0 0.097 0.84 -2008 GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 713349 2 2 2 0 1 1 0 0 0 0 0.098 0.84 -2009 RHCG Rh family, C glycoprotein 729573 2 2 2 0 0 1 0 0 1 0 0.098 0.84 -2010 GPR142 G protein-coupled receptor 142 652002 2 2 2 0 0 1 1 0 0 0 0.098 0.84 -2011 CHGA chromogranin A (parathyroid secretory protein 1) 369603 1 1 1 0 0 0 0 0 1 0 0.098 0.84 -2012 PSMB6 proteasome (prosome, macropain) subunit, beta type, 6 323466 1 1 1 0 0 0 1 0 0 0 0.098 0.84 -2013 SPO11 SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) 601302 2 2 2 0 0 1 1 0 0 0 0.098 0.84 -2014 ZBTB48 zinc finger and BTB domain containing 48 1001832 2 2 2 0 0 0 0 1 1 0 0.098 0.84 -2015 OR8B12 olfactory receptor, family 8, subfamily B, member 12 475059 2 2 2 0 2 0 0 0 0 0 0.098 0.84 -2016 LRRC29 leucine rich repeat containing 29 151086 1 1 1 0 0 0 0 1 0 0 0.098 0.84 -2017 SLC37A2 solute carrier family 37 (glycerol-3-phosphate transporter), member 2 774189 2 2 2 1 0 0 2 0 0 0 0.098 0.84 -2018 GSTA4 glutathione S-transferase A4 351351 1 1 1 0 0 0 0 0 1 0 0.098 0.84 -2019 GCAT glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 524745 2 2 2 0 0 2 0 0 0 0 0.098 0.84 -2020 VSTM1 V-set and transmembrane domain containing 1 378729 1 1 1 0 0 0 1 0 0 0 0.098 0.84 -2021 C20orf114 chromosome 20 open reading frame 114 768105 2 2 2 0 0 1 0 1 0 0 0.098 0.84 -2022 GABRR3 gamma-aminobutyric acid (GABA) receptor, rho 3 672282 2 2 2 1 0 0 1 1 0 0 0.099 0.84 -2023 C19orf57 chromosome 19 open reading frame 57 954681 2 2 2 0 0 1 0 0 1 0 0.099 0.84 -2024 OTOF otoferlin 1975779 4 4 3 2 0 4 0 0 0 0 0.099 0.84 -2025 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 1327833 3 3 3 0 0 3 0 0 0 0 0.099 0.84 -2026 SLC39A4 solute carrier family 39 (zinc transporter), member 4 328536 1 1 1 0 0 1 0 0 0 0 0.099 0.84 -2027 ARHGEF15 Rho guanine nucleotide exchange factor (GEF) 15 1275612 3 3 3 0 0 2 0 1 0 0 0.099 0.84 -2028 CBLN4 cerebellin 4 precursor 271752 1 1 1 0 0 1 0 0 0 0 0.099 0.84 -2029 COL5A3 collagen, type V, alpha 3 2456922 4 4 4 0 0 2 0 0 2 0 0.099 0.84 -2030 KRT222 462384 2 2 2 0 1 0 1 0 0 0 0.099 0.84 -2031 PDRG1 p53 and DNA damage regulated 1 167817 1 1 1 1 0 0 1 0 0 0 0.099 0.84 -2032 MNDA myeloid cell nuclear differentiation antigen 632736 2 2 2 1 0 0 1 0 1 0 0.099 0.84 -2033 DND1 dead end homolog 1 (zebrafish) 231192 1 1 1 0 0 1 0 0 0 0 0.099 0.84 -2034 PRR3 proline rich 3 239304 1 1 1 0 0 1 0 0 0 0 0.099 0.84 -2035 PELO pelota homolog (Drosophila) 591162 2 2 2 0 1 1 0 0 0 0 0.099 0.84 -2036 C4orf39 chromosome 4 open reading frame 39 152607 1 1 1 0 0 0 0 1 0 0 0.099 0.84 -2037 CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 2674425 6 6 6 0 2 3 1 0 0 0 0.099 0.84 -2038 TMEM161A transmembrane protein 161A 399009 1 1 1 0 0 0 0 1 0 0 0.099 0.84 -2039 LAYN layilin 539448 2 2 2 1 2 0 0 0 0 0 0.099 0.84 -2040 TAS2R9 taste receptor, type 2, member 9 478101 2 2 2 0 0 2 0 0 0 0 0.099 0.84 -2041 SAMD3 sterile alpha motif domain containing 3 812721 2 2 2 0 1 0 0 0 1 0 0.099 0.84 -2042 RNF19A ring finger protein 19A 1294371 3 3 3 0 0 0 2 1 0 0 0.099 0.84 -2043 TCEA1 transcription elongation factor A (SII), 1 479622 2 2 2 0 0 1 1 0 0 0 0.099 0.84 -2044 CCR7 chemokine (C-C motif) receptor 7 582543 2 2 2 0 0 1 0 0 1 0 0.099 0.84 -2045 PEX6 peroxisomal biogenesis factor 6 1213758 3 3 3 0 1 0 1 0 1 0 0.099 0.84 -2046 ODF1 outer dense fiber of sperm tails 1 385827 1 1 1 0 0 0 0 0 1 0 0.100 0.84 -2047 SLC37A1 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 740727 2 2 2 0 0 1 0 0 1 0 0.100 0.84 -2048 PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 653523 2 2 2 0 0 1 0 0 1 0 0.100 0.84 -2049 RGS12 regulator of G-protein signaling 12 1186887 3 3 3 1 1 1 1 0 0 0 0.100 0.84 -2050 KRTAP9-9 keratin associated protein 9-9 178464 1 1 1 0 0 1 0 0 0 0 0.100 0.84 -2051 RFPL3 ret finger protein-like 3 487734 2 2 2 0 1 0 0 1 0 0 0.100 0.84 -2052 AVPI1 arginine vasopressin-induced 1 219531 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2053 TEKT2 tektin 2 (testicular) 498888 2 2 2 0 2 0 0 0 0 0 0.10 0.84 -2054 JUN jun oncogene 389376 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2055 TCHH trichohyalin 2852382 6 6 6 1 0 3 2 1 0 0 0.10 0.84 -2056 NCR2 natural cytotoxicity triggering receptor 2 403065 1 1 1 1 0 0 1 0 0 0 0.10 0.84 -2057 DEPDC4 DEP domain containing 4 458835 2 2 2 1 0 1 1 0 0 0 0.10 0.84 -2058 MTX2 metaxin 2 399516 1 1 1 0 0 0 0 1 0 0 0.10 0.84 -2059 HIST1H4L histone cluster 1, H4l 160212 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2060 FABP1 fatty acid binding protein 1, liver 202800 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2061 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 1335438 3 3 3 0 1 0 0 1 1 0 0.10 0.84 -2062 PSG6 pregnancy specific beta-1-glycoprotein 6 658593 2 2 2 0 0 1 1 0 0 0 0.10 0.84 -2063 RALYL RALY RNA binding protein-like 452244 2 2 2 0 1 1 0 0 0 0 0.10 0.84 -2064 UPP1 uridine phosphorylase 1 487227 2 2 2 0 1 0 1 0 0 0 0.10 0.84 -2065 PRX periaxin 1968681 3 3 3 1 0 1 1 0 1 0 0.10 0.84 -2066 PVALB parvalbumin 176943 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2067 ENG endoglin (Osler-Rendu-Weber syndrome 1) 786864 2 2 2 0 1 0 0 0 1 0 0.10 0.84 -2068 RAI1 retinoic acid induced 1 2363127 4 4 4 0 2 0 0 0 2 0 0.10 0.84 -2069 RNF113A ring finger protein 113A 525252 2 2 2 1 1 0 1 0 0 0 0.10 0.84 -2070 TGDS TDP-glucose 4,6-dehydratase 557700 2 2 2 0 0 1 0 1 0 0 0.10 0.84 -2071 SDR39U1 459342 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2072 HIST1H3J histone cluster 1, H3j 210405 1 1 1 0 0 0 1 0 0 0 0.10 0.84 -2073 TMEM182 transmembrane protein 182 359970 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2074 AQP12B aquaporin 12B 269217 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2075 FYCO1 FYVE and coiled-coil domain containing 1 2283528 5 5 5 1 0 1 2 0 2 0 0.10 0.84 -2076 GPR153 G protein-coupled receptor 153 393939 1 1 1 1 0 0 0 0 1 0 0.10 0.84 -2077 REXO2 REX2, RNA exonuclease 2 homolog (S. cerevisiae) 258063 1 1 1 0 0 0 0 1 0 0 0.10 0.84 -2078 SCIN scinderin 741741 2 2 2 0 0 0 0 1 1 0 0.10 0.84 -2079 ZNF565 zinc finger protein 565 768612 2 2 2 0 0 2 0 0 0 0 0.10 0.84 -2080 OR13C2 olfactory receptor, family 13, subfamily C, member 2 487227 2 2 2 0 0 0 2 0 0 0 0.10 0.84 -2081 ST18 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) 1634568 4 4 4 2 2 1 0 0 1 0 0.10 0.84 -2082 MRPL46 mitochondrial ribosomal protein L46 405600 1 1 1 0 0 0 1 0 0 0 0.10 0.84 -2083 RASGEF1C RasGEF domain family, member 1C 378222 1 1 1 1 1 0 0 0 0 0 0.10 0.84 -2084 DMD dystrophin (muscular dystrophy, Duchenne and Becker types) 5894889 11 10 11 3 2 3 3 2 1 0 0.10 0.84 -2085 SH2D4B SH2 domain containing 4B 442104 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2086 LILRA3 leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 683436 2 2 2 0 0 2 0 0 0 0 0.10 0.84 -2087 TSEN15 209391 1 1 1 0 1 0 0 0 0 0 0.10 0.84 -2088 APEX2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 780780 2 2 2 0 0 2 0 0 0 0 0.10 0.84 -2089 AKAP8L A kinase (PRKA) anchor protein 8-like 850239 2 2 2 1 1 0 1 0 0 0 0.10 0.84 -2090 MSI2 musashi homolog 2 (Drosophila) 541476 2 2 2 0 0 1 1 0 0 0 0.10 0.84 -2091 PDCL2 phosducin-like 2 361998 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2092 DBC1 deleted in bladder cancer 1 1149369 3 3 3 1 2 1 0 0 0 0 0.10 0.84 -2093 CNGA3 cyclic nucleotide gated channel alpha 3 1071291 3 3 3 0 1 1 0 1 0 0 0.10 0.84 -2094 HNRNPL heterogeneous nuclear ribonucleoprotein L 663156 2 2 2 0 1 0 0 0 1 0 0.10 0.84 -2095 C19orf29 chromosome 19 open reading frame 29 394953 1 1 1 0 0 0 1 0 0 0 0.10 0.84 -2096 CALR3 calreticulin 3 601809 2 2 2 0 0 2 0 0 0 0 0.10 0.84 -2097 TBC1D22A TBC1 domain family, member 22A 564291 2 2 2 0 0 1 0 1 0 0 0.10 0.84 -2098 CHEK2 CHK2 checkpoint homolog (S. pombe) 829959 2 2 2 0 0 1 0 1 0 0 0.10 0.84 -2099 API5 apoptosis inhibitor 5 789906 2 2 2 0 0 0 2 0 0 0 0.10 0.84 -2100 CREB3L1 cAMP responsive element binding protein 3-like 1 644904 2 2 2 0 0 1 1 0 0 0 0.10 0.84 -2101 GSTO2 glutathione S-transferase omega 2 364026 1 1 1 0 0 0 1 0 0 0 0.10 0.84 -2102 CLN3 ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 689520 2 2 2 0 0 0 1 1 0 0 0.10 0.84 -2103 RELN reelin 5361018 10 10 10 3 2 3 3 0 2 0 0.10 0.84 -2104 SHE Src homology 2 domain containing E 565812 2 2 2 1 1 1 0 0 0 0 0.10 0.84 -2105 ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 450723 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2106 SNTG1 syntrophin, gamma 1 822354 2 2 2 2 1 0 0 0 1 0 0.10 0.84 -2107 ABCF2 ATP-binding cassette, sub-family F (GCN20), member 2 998283 3 3 3 0 1 0 1 0 1 0 0.10 0.84 -2108 LILRA1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1 763542 2 2 2 0 2 0 0 0 0 0 0.10 0.84 -2109 OR52K2 olfactory receptor, family 52, subfamily K, member 2 481143 2 2 2 0 0 1 1 0 0 0 0.10 0.84 -2110 TSPAN17 tetraspanin 17 461877 1 1 1 2 0 0 0 0 1 0 0.10 0.84 -2111 KRT80 keratin 80 677352 2 2 2 0 0 2 0 0 0 0 0.10 0.84 -2112 SGK1 serum/glucocorticoid regulated kinase 1 953667 2 2 2 1 0 1 0 0 1 0 0.10 0.84 -2113 CD300LG CD300 molecule-like family member g 445146 1 1 1 0 0 0 1 0 0 0 0.10 0.84 -2114 DSC3 desmocollin 3 450216 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2115 TSKS 872547 2 2 2 0 2 0 0 0 0 0 0.10 0.84 -2116 COX5A cytochrome c oxidase subunit Va 185055 1 1 1 0 1 0 0 0 0 0 0.10 0.84 -2117 ESR2 estrogen receptor 2 (ER beta) 867477 2 2 2 1 1 0 1 0 0 0 0.10 0.84 -2118 SYT4 synaptotagmin IV 656058 2 2 2 0 0 2 0 0 0 0 0.10 0.84 -2119 SARS2 seryl-tRNA synthetase 2, mitochondrial 787371 2 2 2 0 0 2 0 0 0 0 0.10 0.84 -2120 GJB2 gap junction protein, beta 2, 26kDa 347295 1 1 1 0 0 0 1 0 0 0 0.10 0.84 -2121 GABRQ gamma-aminobutyric acid (GABA) receptor, theta 981045 3 3 3 1 2 1 0 0 0 0 0.10 0.84 -2122 SCYL2 SCY1-like 2 (S. cerevisiae) 1449006 3 3 3 0 0 0 2 0 1 0 0.10 0.84 -2123 ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 1977807 4 4 4 2 1 0 2 1 0 0 0.10 0.84 -2124 C5orf42 chromosome 5 open reading frame 42 3265587 6 6 6 0 1 2 2 0 1 0 0.10 0.84 -2125 MTMR4 myotubularin related protein 4 1855620 4 4 4 0 1 2 1 0 0 0 0.10 0.84 -2126 EDEM3 ER degradation enhancer, mannosidase alpha-like 3 1387659 3 3 3 0 0 0 1 1 1 0 0.10 0.84 -2127 TRERF1 transcriptional regulating factor 1 1779063 3 3 3 4 0 1 0 0 2 0 0.10 0.84 -2128 F13A1 coagulation factor XIII, A1 polypeptide 1143285 3 3 3 0 1 2 0 0 0 0 0.10 0.84 -2129 LRRC28 leucine rich repeat containing 28 577980 2 2 2 0 0 1 1 0 0 0 0.10 0.84 -2130 ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 187083 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2131 PSTK phosphoseryl-tRNA kinase 442611 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2132 SLC35D2 solute carrier family 35, member D2 452751 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2133 SPIN1 spindlin 1 410163 1 1 1 1 0 0 1 0 0 0 0.10 0.84 -2134 FBXL6 F-box and leucine-rich repeat protein 6 372645 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2135 C2orf89 646932 2 2 2 0 0 1 1 0 0 0 0.10 0.84 -2136 ALKBH7 alkB, alkylation repair homolog 7 (E. coli) 240318 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2137 CDK11B 478608 2 2 2 0 0 0 1 0 1 0 0.10 0.84 -2138 FANCA Fanconi anemia, complementation group A 1884519 2 2 2 0 0 0 0 0 2 0 0.10 0.84 -2139 IGLON5 296088 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2140 PPP1R1A protein phosphatase 1, regulatory (inhibitor) subunit 1A 231192 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2141 QSER1 glutamine and serine rich 1 2662764 7 6 7 1 2 2 3 0 0 0 0.10 0.84 -2142 IMP4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) 354393 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2143 C6orf211 chromosome 6 open reading frame 211 682422 2 2 2 0 1 1 0 0 0 0 0.10 0.84 -2144 FAM102A family with sequence similarity 102, member A 388362 1 1 1 0 0 1 0 0 0 0 0.10 0.84 -2145 OR4X2 olfactory receptor, family 4, subfamily X, member 2 464412 2 2 2 0 1 1 0 0 0 0 0.10 0.84 -2146 MYL1 myosin, light chain 1, alkali; skeletal, fast 312312 1 1 1 0 0 0 0 1 0 0 0.10 0.84 -2147 STC1 stanniocalcin 1 385320 1 1 1 0 0 0 0 0 1 0 0.10 0.84 -2148 DMGDH dimethylglycine dehydrogenase 1297920 3 3 3 0 1 0 1 0 1 0 0.10 0.84 -2149 RAB1A RAB1A, member RAS oncogene family 311805 1 1 1 0 0 0 1 0 0 0 0.10 0.84 -2150 LILRA2 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 724503 2 2 2 1 0 2 0 0 0 0 0.10 0.84 -2151 TRIM46 tripartite motif-containing 46 1006395 3 3 3 1 1 1 0 0 1 0 0.10 0.84 -2152 PLEKHA1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 638313 2 2 2 0 0 0 1 1 0 0 0.10 0.84 -2153 SOX10 SRY (sex determining region Y)-box 10 475566 1 1 1 1 0 0 0 0 1 0 0.10 0.84 -2154 OR52A5 olfactory receptor, family 52, subfamily A, member 5 483678 2 2 2 0 1 0 1 0 0 0 0.10 0.84 -2155 FAM124B family with sequence similarity 124B 373152 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2156 TLN1 talin 1 3952065 7 7 7 1 0 1 2 1 3 0 0.11 0.84 -2157 DLGAP4 discs, large (Drosophila) homolog-associated protein 4 1570686 4 4 4 0 2 1 1 0 0 0 0.11 0.84 -2158 CACNG3 calcium channel, voltage-dependent, gamma subunit 3 488748 2 2 2 0 1 1 0 0 0 0 0.11 0.84 -2159 OR1D4 olfactory receptor, family 1, subfamily D, member 4 505479 2 2 2 0 2 0 0 0 0 0 0.11 0.84 -2160 RS1 retinoschisis (X-linked, juvenile) 1 354393 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2161 SMAD3 SMAD family member 3 559221 2 2 2 0 1 1 0 0 0 0 0.11 0.84 -2162 ABCB11 ATP-binding cassette, sub-family B (MDR/TAP), member 11 2065011 4 4 4 0 0 2 1 0 1 0 0.11 0.84 -2163 DNAH9 dynein, axonemal, heavy chain 9 6734988 13 12 13 2 4 5 3 0 1 0 0.11 0.84 -2164 PSG11 pregnancy specific beta-1-glycoprotein 11 521196 2 2 2 0 0 1 1 0 0 0 0.11 0.84 -2165 SNAI2 snail homolog 2 (Drosophila) 415233 1 1 1 0 0 0 0 0 1 0 0.11 0.84 -2166 CCDC24 coiled-coil domain containing 24 417768 1 1 1 0 0 1 0 0 0 0 0.11 0.84 -2167 TSKU tsukushin 477594 1 1 1 0 0 0 0 0 1 0 0.11 0.84 -2168 ATP1B4 ATPase, (Na+)/K+ transporting, beta 4 polypeptide 560742 2 2 2 0 1 1 0 0 0 0 0.11 0.84 -2169 KIAA1267 KIAA1267 1655355 3 3 3 0 0 0 0 0 3 0 0.11 0.84 -2170 TMEM119 transmembrane protein 119 367068 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2171 CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 979017 3 3 3 0 0 1 2 0 0 0 0.11 0.84 -2172 MSMP 219024 1 1 1 1 1 0 0 0 0 0 0.11 0.84 -2173 CDYL chromodomain protein, Y-like 828438 2 2 2 0 1 0 1 0 0 0 0.11 0.84 -2174 ZNF740 zinc finger protein 740 307242 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2175 CASP6 caspase 6, apoptosis-related cysteine peptidase 439062 1 1 1 0 0 0 0 0 1 0 0.11 0.84 -2176 KCNK5 potassium channel, subfamily K, member 5 706251 2 2 2 0 0 1 1 0 0 0 0.11 0.84 -2177 HOOK1 hook homolog 1 (Drosophila) 1030731 3 3 3 0 1 1 0 1 0 0 0.11 0.84 -2178 KIAA0947 3344679 7 6 7 1 0 2 1 1 1 2 0.11 0.84 -2179 C7orf10 chromosome 7 open reading frame 10 606879 2 2 2 0 0 0 1 0 1 0 0.11 0.84 -2180 WDR26 WD repeat domain 26 819312 2 2 2 3 0 1 1 0 0 0 0.11 0.84 -2181 GLRX glutaredoxin (thioltransferase) 166803 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2182 FAM196A 725010 2 2 2 0 0 0 0 1 1 0 0.11 0.84 -2183 PDS5A PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 1802385 3 3 3 1 0 0 2 0 1 0 0.11 0.84 -2184 APOL2 apolipoprotein L, 2 520182 2 2 2 0 1 0 1 0 0 0 0.11 0.84 -2185 TGM7 transglutaminase 7 1012986 3 3 3 0 2 1 0 0 0 0 0.11 0.84 -2186 LOH12CR1 loss of heterozygosity, 12, chromosomal region 1 306735 1 1 1 0 1 0 0 0 0 0 0.11 0.84 -2187 HOXD11 homeobox D11 209898 1 1 1 0 1 0 0 0 0 0 0.11 0.84 -2188 SP100 SP100 nuclear antigen 1667016 4 4 4 0 1 1 2 0 0 0 0.11 0.84 -2189 PHEX phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets) 1185366 3 3 3 0 1 1 1 0 0 0 0.11 0.84 -2190 POTEF 1487538 3 3 3 0 1 1 0 0 1 0 0.11 0.84 -2191 NQO1 NAD(P)H dehydrogenase, quinone 1 430443 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2192 PAFAH1B3 platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa 273780 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2193 AIDA 429429 1 1 1 0 0 0 1 0 0 0 0.11 0.84 -2194 ACHE acetylcholinesterase (Yt blood group) 829452 2 2 2 0 0 1 1 0 0 0 0.11 0.84 -2195 MUS81 MUS81 endonuclease homolog (S. cerevisiae) 625638 2 2 2 0 1 1 0 0 0 0 0.11 0.84 -2196 SGCZ sarcoglycan zeta 470496 1 1 1 1 0 0 0 0 1 0 0.11 0.84 -2197 OR5T1 olfactory receptor, family 5, subfamily T, member 1 499395 2 2 2 0 0 1 1 0 0 0 0.11 0.84 -2198 COQ9 coenzyme Q9 homolog (S. cerevisiae) 464412 1 1 1 0 0 0 0 0 1 0 0.11 0.84 -2199 CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 3430869 7 7 7 0 2 3 0 1 1 0 0.11 0.84 -2200 CCDC104 coiled-coil domain containing 104 541983 2 2 2 1 0 0 1 1 0 0 0.11 0.84 -2201 ABHD2 abhydrolase domain containing 2 665184 2 2 2 0 1 1 0 0 0 0 0.11 0.84 -2202 METTL2B methyltransferase like 2B 594711 2 2 2 1 0 0 2 0 0 0 0.11 0.84 -2203 KCNJ15 potassium inwardly-rectifying channel, subfamily J, member 15 573924 2 2 2 0 2 0 0 0 0 0 0.11 0.84 -2204 NRBP1 nuclear receptor binding protein 1 849732 2 2 2 0 0 0 0 1 1 0 0.11 0.84 -2205 CYP4F8 cytochrome P450, family 4, subfamily F, polypeptide 8 816270 2 2 2 0 1 0 0 1 0 0 0.11 0.84 -2206 FAM173B 365547 1 1 1 0 0 0 0 1 0 0 0.11 0.84 -2207 C14orf145 chromosome 14 open reading frame 145 1712139 3 3 3 0 0 1 0 0 2 0 0.11 0.85 -2208 C1orf96 chromosome 1 open reading frame 96 230178 1 1 1 0 0 0 0 1 0 0 0.11 0.85 -2209 HAMP hepcidin antimicrobial peptide 135369 1 1 1 0 0 0 0 1 0 0 0.11 0.85 -2210 IL1RL2 interleukin 1 receptor-like 2 898404 2 2 2 0 0 1 0 1 0 0 0.11 0.85 -2211 C14orf68 chromosome 14 open reading frame 68 454272 1 1 1 1 0 1 0 0 0 0 0.11 0.85 -2212 PRR12 proline rich 12 921726 2 2 2 1 0 1 1 0 0 0 0.11 0.85 -2213 SMTN smoothelin 1175733 3 3 3 0 0 1 0 1 1 0 0.11 0.85 -2214 CD40LG CD40 ligand (TNF superfamily, member 5, hyper-IgM syndrome) 408642 1 1 1 0 0 1 0 0 0 0 0.11 0.85 -2215 MYOZ1 myozenin 1 466440 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2216 ESAM endothelial cell adhesion molecule 540969 2 2 2 0 2 0 0 0 0 0 0.11 0.85 -2217 KLHDC7A kelch domain containing 7A 833508 2 2 2 0 0 0 2 0 0 0 0.11 0.85 -2218 CD300E CD300e molecule 321438 1 1 1 1 0 1 0 0 0 0 0.11 0.85 -2219 GPD1 glycerol-3-phosphate dehydrogenase 1 (soluble) 548574 2 2 2 0 0 2 0 0 0 0 0.11 0.85 -2220 SLC20A2 solute carrier family 20 (phosphate transporter), member 2 987129 2 2 2 1 1 0 0 0 1 0 0.11 0.85 -2221 CAPN12 calpain 12 326508 1 1 1 0 0 0 1 0 0 0 0.11 0.85 -2222 ZNF157 zinc finger protein 157 779259 2 2 2 0 0 0 2 0 0 0 0.11 0.85 -2223 C3orf36 chromosome 3 open reading frame 36 254514 1 1 1 0 0 0 1 0 0 0 0.11 0.85 -2224 XRN2 5'-3' exoribonuclease 2 1467258 3 3 3 0 1 1 0 0 1 0 0.11 0.85 -2225 PLXNA4 plexin A4 3083067 6 6 6 4 1 5 0 0 0 0 0.11 0.85 -2226 CHD9 chromodomain helicase DNA binding protein 9 4040283 7 7 7 1 0 0 4 2 1 0 0.11 0.85 -2227 FERD3L Fer3-like (Drosophila) 256035 1 1 1 1 0 0 0 1 0 0 0.11 0.85 -2228 MFSD4 major facilitator superfamily domain containing 4 684450 2 2 2 0 0 1 1 0 0 0 0.11 0.85 -2229 PNPLA3 patatin-like phospholipase domain containing 3 654537 4 2 4 0 1 0 0 0 0 3 0.11 0.85 -2230 ZNF791 zinc finger protein 791 885729 2 2 2 2 0 2 0 0 0 0 0.11 0.85 -2231 C12orf40 chromosome 12 open reading frame 40 1019577 3 3 3 0 1 1 1 0 0 0 0.11 0.85 -2232 TC2N tandem C2 domains, nuclear 769119 2 2 2 1 1 0 0 1 0 0 0.11 0.85 -2233 MTM1 myotubularin 1 947076 2 2 2 0 0 1 0 1 0 0 0.11 0.85 -2234 ASPH aspartate beta-hydroxylase 1524042 3 3 3 0 0 1 0 0 2 0 0.11 0.85 -2235 MAGED1 melanoma antigen family D, 1 1294371 2 2 2 0 0 1 0 0 1 0 0.11 0.85 -2236 MYL12A 267696 2 1 2 0 1 0 1 0 0 0 0.11 0.85 -2237 FMO2 flavin containing monooxygenase 2 (non-functional) 734136 2 2 2 0 0 0 1 1 0 0 0.11 0.85 -2238 INTS8 integrator complex subunit 8 1501734 3 3 3 0 0 0 0 3 0 0 0.11 0.85 -2239 ZNF528 zinc finger protein 528 964821 3 3 3 0 0 1 2 0 0 0 0.11 0.85 -2240 IL21 interleukin 21 258063 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2241 SYPL2 synaptophysin-like 2 357942 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2242 FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 552630 2 2 2 0 2 0 0 0 0 0 0.11 0.85 -2243 GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 694083 2 2 2 0 0 2 0 0 0 0 0.11 0.85 -2244 PHLPP2 2050308 4 4 4 0 0 3 0 0 1 0 0.11 0.85 -2245 SLC13A5 solute carrier family 13 (sodium-dependent citrate transporter), member 5 822861 2 2 2 1 0 1 0 0 1 0 0.11 0.85 -2246 ATP9A ATPase, class II, type 9A 1614288 3 3 3 0 0 1 0 0 2 0 0.11 0.85 -2247 HIBCH 3-hydroxyisobutyryl-Coenzyme A hydrolase 616512 2 2 2 0 0 0 2 0 0 0 0.11 0.85 -2248 SMOC2 SPARC related modular calcium binding 2 624117 2 2 2 0 0 2 0 0 0 0 0.11 0.85 -2249 FAM40A family with sequence similarity 40, member A 1178268 2 2 2 0 0 1 0 0 1 0 0.11 0.85 -2250 HOOK2 hook homolog 2 (Drosophila) 978510 2 2 2 0 0 1 0 0 1 0 0.11 0.85 -2251 HNF4A hepatocyte nuclear factor 4, alpha 755430 2 2 2 0 0 1 1 0 0 0 0.11 0.85 -2252 HIST1H3D histone cluster 1, H3d 210405 1 1 1 0 0 1 0 0 0 0 0.11 0.85 -2253 ENOPH1 enolase-phosphatase 1 386841 1 1 1 0 0 0 1 0 0 0 0.11 0.85 -2254 OSBPL2 oxysterol binding protein-like 2 736671 2 2 2 0 0 1 1 0 0 0 0.11 0.85 -2255 GAP43 growth associated protein 43 369603 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2256 PPP4C protein phosphatase 4 (formerly X), catalytic subunit 432978 1 1 1 0 0 0 0 1 0 0 0.11 0.85 -2257 MMD monocyte to macrophage differentiation-associated 362505 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2258 SLCO1B1 solute carrier organic anion transporter family, member 1B1 1080924 3 3 3 0 0 1 1 0 1 0 0.11 0.85 -2259 DPH1 DPH1 homolog (S. cerevisiae) 359970 1 1 1 0 0 0 1 0 0 0 0.11 0.85 -2260 TADA2B 404586 1 1 1 1 0 0 0 0 1 0 0.11 0.85 -2261 SERPINE3 658593 2 2 2 0 0 2 0 0 0 0 0.11 0.85 -2262 PRSS50 459849 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2263 HOXB2 homeobox B2 531336 2 2 2 0 2 0 0 0 0 0 0.11 0.85 -2264 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila) 912600 2 2 2 0 0 1 1 0 0 0 0.11 0.85 -2265 OR6B1 olfactory receptor, family 6, subfamily B, member 1 476580 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2266 C2orf68 143481 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2267 ZMYM3 zinc finger, MYM-type 3 2139540 4 4 4 0 1 1 1 0 1 0 0.11 0.85 -2268 FGF11 fibroblast growth factor 11 254007 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2269 CA11 carbonic anhydrase XI 469482 1 1 1 1 0 0 0 0 1 0 0.11 0.85 -2270 SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 776217 2 2 2 0 0 0 1 1 0 0 0.11 0.85 -2271 C1orf50 chromosome 1 open reading frame 50 211419 1 1 1 0 0 1 0 0 0 0 0.11 0.85 -2272 PICK1 protein interacting with PRKCA 1 279357 1 1 1 0 0 0 1 0 0 0 0.11 0.85 -2273 REG3G regenerating islet-derived 3 gamma 277836 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2274 ARHGAP11A Rho GTPase activating protein 11A 1593501 4 4 4 0 2 0 2 0 0 0 0.11 0.85 -2275 TCF19 transcription factor 19 (SC1) 461877 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2276 HIST2H2AC histone cluster 2, H2ac 199758 1 1 1 4 0 1 0 0 0 0 0.11 0.85 -2277 TOMM22 translocase of outer mitochondrial membrane 22 homolog (yeast) 164268 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2278 KRT9 keratin 9 (epidermolytic palmoplantar keratoderma) 853788 2 2 2 3 0 1 0 1 0 0 0.11 0.85 -2279 KLRC2 killer cell lectin-like receptor subfamily C, member 2 365040 1 1 1 1 0 0 0 0 1 0 0.11 0.85 -2280 MKRN3 makorin, ring finger protein, 3 752388 2 2 2 1 1 0 0 1 0 0 0.11 0.85 -2281 SLC2A10 solute carrier family 2 (facilitated glucose transporter), member 10 830466 2 2 2 0 0 1 0 1 0 0 0.11 0.85 -2282 HOMER3 homer homolog 3 (Drosophila) 182520 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2283 LRRC30 leucine rich repeat containing 30 461370 1 1 1 0 0 0 1 0 0 0 0.11 0.85 -2284 KHK ketohexokinase (fructokinase) 492804 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2285 CHRNA10 cholinergic receptor, nicotinic, alpha 10 422838 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2286 MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 1182831 2 2 2 1 0 1 0 0 1 0 0.11 0.85 -2287 CCDC102A coiled-coil domain containing 102A 438048 1 1 1 0 0 0 0 1 0 0 0.11 0.85 -2288 TTC15 tetratricopeptide repeat domain 15 631722 2 2 2 0 1 0 1 0 0 0 0.11 0.85 -2289 PSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6 624624 2 2 2 1 0 1 1 0 0 0 0.11 0.85 -2290 TMEM87A transmembrane protein 87A 886236 2 2 2 0 0 0 2 0 0 0 0.11 0.85 -2291 RBM6 RNA binding motif protein 6 1750164 4 4 4 0 1 1 2 0 0 0 0.11 0.85 -2292 CLCN3 chloride channel 3 1345071 3 3 3 1 2 0 1 0 0 0 0.11 0.85 -2293 ACOT8 acyl-CoA thioesterase 8 439062 1 1 1 0 0 0 1 0 0 0 0.11 0.85 -2294 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 5120700 8 7 8 1 0 0 4 2 2 0 0.11 0.85 -2295 SYP synaptophysin 423345 1 1 1 0 0 1 0 0 0 0 0.11 0.85 -2296 TBC1D4 TBC1 domain family, member 4 1843452 4 4 4 0 2 1 0 0 1 0 0.11 0.85 -2297 LMTK3 lemur tyrosine kinase 3 693069 2 2 2 2 1 0 0 0 1 0 0.11 0.85 -2298 DPP3 dipeptidyl-peptidase 3 1071291 3 3 3 0 0 3 0 0 0 0 0.11 0.85 -2299 TTLL12 tubulin tyrosine ligase-like family, member 12 482664 1 1 1 1 0 0 0 0 1 0 0.11 0.85 -2300 OR2B3 479622 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2301 C4orf17 chromosome 4 open reading frame 17 563784 2 2 2 0 0 0 1 1 0 0 0.11 0.85 -2302 C3orf70 284427 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2303 PEG10 paternally expressed 10 451737 1 1 1 0 0 0 0 0 1 0 0.11 0.85 -2304 NFASC neurofascin homolog (chicken) 2085798 4 4 4 0 0 0 2 0 2 0 0.11 0.85 -2305 LAMA2 laminin, alpha 2 (merosin, congenital muscular dystrophy) 4818021 7 7 7 0 1 2 2 0 2 0 0.11 0.85 -2306 CNDP1 carnosine dipeptidase 1 (metallopeptidase M20 family) 797004 2 2 2 0 0 0 1 1 0 0 0.11 0.85 -2307 KIAA1715 KIAA1715 676845 2 2 2 0 1 0 0 1 0 0 0.11 0.85 -2308 HHAT hedgehog acyltransferase 773682 2 2 2 0 0 1 0 1 0 0 0.11 0.85 -2309 HSD17B10 hydroxysteroid (17-beta) dehydrogenase 10 394953 1 1 1 0 0 1 0 0 0 0 0.11 0.85 -2310 LMAN1 lectin, mannose-binding, 1 717912 2 2 2 0 1 0 0 0 1 0 0.11 0.85 -2311 MRPL32 mitochondrial ribosomal protein L32 239811 1 1 1 0 1 0 0 0 0 0 0.11 0.85 -2312 UMOD uromodulin (uromucoid, Tamm-Horsfall glycoprotein) 743769 2 2 2 0 0 1 1 0 0 0 0.11 0.85 -2313 IRAK2 interleukin-1 receptor-associated kinase 2 882180 2 2 2 0 0 2 0 0 0 0 0.11 0.85 -2314 WISP1 WNT1 inducible signaling pathway protein 1 518661 2 2 2 1 0 2 0 0 0 0 0.11 0.85 -2315 SPPL3 555165 2 2 2 0 1 1 0 0 0 0 0.11 0.85 -2316 HRH2 histamine receptor H2 549588 2 2 2 0 1 1 0 0 0 0 0.11 0.85 -2317 CD40 CD40 molecule, TNF receptor superfamily member 5 441090 1 1 1 0 0 0 0 0 1 0 0.11 0.86 -2318 TTC19 tetratricopeptide repeat domain 19 437541 1 1 1 0 0 0 0 0 1 0 0.11 0.86 -2319 ZNF695 zinc finger protein 695 792948 2 2 2 0 0 0 1 0 1 0 0.11 0.86 -2320 C17orf78 chromosome 17 open reading frame 78 371124 1 1 1 0 0 0 0 0 1 0 0.11 0.86 -2321 RPLP2 ribosomal protein, large, P2 120159 1 1 1 0 0 0 0 1 0 0 0.11 0.86 -2322 KCNK13 potassium channel, subfamily K, member 13 454779 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2323 C6orf136 chromosome 6 open reading frame 136 454272 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2324 F2 coagulation factor II (thrombin) 837564 2 2 2 1 0 1 0 1 0 0 0.12 0.86 -2325 GUCA1C guanylate cyclase activator 1C 327522 1 1 1 0 0 0 0 1 0 0 0.12 0.86 -2326 MCTS1 malignant T cell amplified sequence 1 288990 1 1 1 0 1 0 0 0 0 0 0.12 0.86 -2327 PGD phosphogluconate dehydrogenase 756444 2 2 2 0 1 0 1 0 0 0 0.12 0.86 -2328 BLOC1S1 biogenesis of lysosome-related organelles complex-1, subunit 1 199758 1 1 1 0 0 0 1 0 0 0 0.12 0.86 -2329 IFI16 interferon, gamma-inducible protein 16 1043406 3 3 3 0 1 1 1 0 0 0 0.12 0.86 -2330 ELMOD1 ELMO/CED-12 domain containing 1 416754 1 1 1 0 0 0 1 0 0 0 0.12 0.86 -2331 CEP120 1541787 3 3 3 0 0 0 2 0 1 0 0.12 0.86 -2332 ATP2B3 ATPase, Ca++ transporting, plasma membrane 3 1700478 4 4 4 1 1 2 1 0 0 0 0.12 0.86 -2333 TAS2R10 taste receptor, type 2, member 10 470496 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2334 SVIL supervillin 3393351 6 6 6 0 1 2 2 0 1 0 0.12 0.86 -2335 ESRP2 919191 2 2 2 0 0 2 0 0 0 0 0.12 0.86 -2336 SCARB1 scavenger receptor class B, member 1 744276 2 2 2 0 1 0 1 0 0 0 0.12 0.86 -2337 OR56B4 olfactory receptor, family 56, subfamily B, member 4 488748 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2338 PCDHGA1 protocadherin gamma subfamily A, 1 1451541 3 3 3 2 1 1 0 1 0 0 0.12 0.86 -2339 LCMT1 leucine carboxyl methyltransferase 1 488241 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2340 POLD4 polymerase (DNA-directed), delta 4 139425 1 1 1 0 0 0 0 1 0 0 0.12 0.86 -2341 ZDHHC21 zinc finger, DHHC-type containing 21 418782 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2342 VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) 683436 2 2 2 0 0 1 1 0 0 0 0.12 0.86 -2343 NPY neuropeptide Y 155142 1 1 1 0 1 0 0 0 0 0 0.12 0.86 -2344 YLPM1 YLP motif containing 1 3255447 6 6 6 0 2 0 3 0 1 0 0.12 0.86 -2345 OR10AD1 olfactory receptor, family 10, subfamily AD, member 1 485706 1 1 1 0 0 0 0 1 0 0 0.12 0.86 -2346 CD3E CD3e molecule, epsilon (CD3-TCR complex) 332592 1 1 1 0 0 0 1 0 0 0 0.12 0.86 -2347 SLC4A2 solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) 1667016 4 4 4 0 0 2 2 0 0 0 0.12 0.86 -2348 C7orf57 chromosome 7 open reading frame 57 402558 1 1 1 0 0 0 0 1 0 0 0.12 0.86 -2349 CHRM1 cholinergic receptor, muscarinic 1 703209 2 2 2 0 1 0 1 0 0 0 0.12 0.86 -2350 DOCK11 dedicator of cytokinesis 11 3208296 6 6 6 1 2 1 1 0 2 0 0.12 0.86 -2351 GALR2 galanin receptor 2 194181 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2352 DGCR2 DiGeorge syndrome critical region gene 2 433992 1 1 1 0 0 0 0 1 0 0 0.12 0.86 -2353 PRR5 proline rich 5 (renal) 155142 1 1 1 0 1 0 0 0 0 0 0.12 0.86 -2354 DENND1C DENN/MADD domain containing 1C 956202 2 2 2 0 0 1 0 0 1 0 0.12 0.86 -2355 GLYCTK glycerate kinase 721968 2 2 2 0 0 1 1 0 0 0 0.12 0.86 -2356 SIGLEC8 sialic acid binding Ig-like lectin 8 774696 2 2 2 0 1 0 1 0 0 0 0.12 0.86 -2357 UNC13A unc-13 homolog A (C. elegans) 1950936 4 4 4 2 1 2 0 0 1 0 0.12 0.86 -2358 FAM3C family with sequence similarity 3, member C 365040 1 1 1 1 0 0 1 0 0 0 0.12 0.86 -2359 IL20RB interleukin 20 receptor beta 488748 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2360 SLC25A35 solute carrier family 25, member 35 462384 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2361 DHX37 DEAH (Asp-Glu-Ala-His) box polypeptide 37 1508832 3 3 2 2 0 1 0 0 2 0 0.12 0.86 -2362 PELI3 pellino homolog 3 (Drosophila) 498888 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2363 CYP4B1 cytochrome P450, family 4, subfamily B, polypeptide 1 804609 2 2 2 0 0 0 2 0 0 0 0.12 0.86 -2364 LRRC46 leucine rich repeat containing 46 505986 1 1 1 1 0 0 0 0 1 0 0.12 0.86 -2365 SLC39A6 solute carrier family 39 (zinc transporter), member 6 1174212 3 3 3 0 0 1 2 0 0 0 0.12 0.86 -2366 AKR7A3 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) 377715 1 1 1 0 0 0 0 1 0 0 0.12 0.86 -2367 ICOSLG inducible T-cell co-stimulator ligand 281385 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2368 RP2 retinitis pigmentosa 2 (X-linked recessive) 490269 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2369 CFHR2 complement factor H-related 2 390897 1 1 1 0 0 0 1 0 0 0 0.12 0.86 -2370 S100A6 S100 calcium binding protein A6 142467 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2371 ACTG2 actin, gamma 2, smooth muscle, enteric 589641 2 2 2 0 0 2 0 0 0 0 0.12 0.86 -2372 C4orf43 324480 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2373 TOR1A torsin family 1, member A (torsin A) 424359 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2374 ZMAT5 zinc finger, matrin type 5 263640 1 1 1 0 1 0 0 0 0 0 0.12 0.86 -2375 ARL5A ADP-ribosylation factor-like 5A 285948 1 1 1 0 0 0 1 0 0 0 0.12 0.86 -2376 QPCT glutaminyl-peptide cyclotransferase (glutaminyl cyclase) 501930 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2377 MRPL51 mitochondrial ribosomal protein L51 202293 1 1 1 1 0 1 0 0 0 0 0.12 0.86 -2378 FBXO30 F-box protein 30 1138722 3 3 3 0 1 1 1 0 0 0 0.12 0.86 -2379 MRPS18B mitochondrial ribosomal protein S18B 408135 1 1 1 0 1 0 0 0 0 0 0.12 0.86 -2380 LOXL3 lysyl oxidase-like 3 1083966 3 3 3 0 1 2 0 0 0 0 0.12 0.86 -2381 SMPD2 sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) 665184 2 2 2 0 0 2 0 0 0 0 0.12 0.86 -2382 WISP2 WNT1 inducible signaling pathway protein 2 213447 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2383 RNF123 ring finger protein 123 1919502 4 4 4 0 1 1 2 0 0 0 0.12 0.86 -2384 TRIM72 tripartite motif-containing 72 213447 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2385 KLHL14 kelch-like 14 (Drosophila) 643890 2 2 2 0 0 0 1 1 0 0 0.12 0.86 -2386 OR5H15 olfactory receptor, family 5, subfamily H, member 15 479622 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2387 PREX1 2272881 5 5 5 0 1 3 0 0 1 0 0.12 0.86 -2388 CCDC112 coiled-coil domain containing 112 765063 2 2 2 0 0 1 1 0 0 0 0.12 0.86 -2389 ARNT aryl hydrocarbon receptor nuclear translocator 1231503 2 2 2 0 0 0 0 1 1 0 0.12 0.86 -2390 NOS1AP nitric oxide synthase 1 (neuronal) adaptor protein 771147 2 2 2 0 1 0 1 0 0 0 0.12 0.86 -2391 ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 616512 2 2 2 0 1 1 0 0 0 0 0.12 0.86 -2392 EBPL emopamil binding protein-like 234234 1 1 1 0 0 0 0 0 1 0 0.12 0.86 -2393 HLA-F major histocompatibility complex, class I, F 630201 2 2 2 0 0 1 1 0 0 0 0.12 0.86 -2394 MAP3K13 mitogen-activated protein kinase kinase kinase 13 1497171 3 3 3 0 1 1 0 0 1 0 0.12 0.86 -2395 DDX50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 1106781 3 3 3 0 1 2 0 0 0 0 0.12 0.86 -2396 PSMC4 proteasome (prosome, macropain) 26S subunit, ATPase, 4 659607 2 2 2 0 1 1 0 0 0 0 0.12 0.86 -2397 ABCD1 ATP-binding cassette, sub-family D (ALD), member 1 520182 2 2 2 0 0 1 0 0 1 0 0.12 0.86 -2398 CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 412191 1 1 1 0 0 1 0 0 0 0 0.12 0.86 -2399 TOMM20L 155649 1 1 1 0 0 0 1 0 0 0 0.12 0.86 -2400 PRF1 perforin 1 (pore forming protein) 823875 2 2 2 2 0 1 0 0 1 0 0.12 0.86 -2401 FANK1 fibronectin type III and ankyrin repeat domains 1 539955 2 2 2 0 0 1 0 1 0 0 0.12 0.86 -2402 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 715884 2 2 2 0 0 0 2 0 0 0 0.12 0.86 -2403 LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 719940 2 2 2 1 0 1 0 0 1 0 0.12 0.86 -2404 DLG1 discs, large homolog 1 (Drosophila) 1479933 3 3 3 0 0 0 0 1 2 0 0.12 0.86 -2405 BMX BMX non-receptor tyrosine kinase 1064700 2 2 2 0 0 0 1 0 1 0 0.12 0.86 -2406 FAM82B family with sequence similarity 82, member B 429429 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2407 LRBA LPS-responsive vesicle trafficking, beach and anchor containing 4360707 7 7 7 1 0 2 3 0 2 0 0.12 0.87 -2408 CELF6 300144 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2409 TGFBR1 transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kDa) 733629 2 2 2 0 0 1 1 0 0 0 0.12 0.87 -2410 CPEB1 cytoplasmic polyadenylation element binding protein 1 818805 2 2 2 0 0 0 1 1 0 0 0.12 0.87 -2411 VSIG1 V-set and immunoglobulin domain containing 1 604344 2 2 2 1 1 1 0 0 0 0 0.12 0.87 -2412 MARCH2 membrane-associated ring finger (C3HC4) 2 383799 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2413 ARHGAP12 Rho GTPase activating protein 12 1324791 3 3 3 0 1 0 2 0 0 0 0.12 0.87 -2414 CLEC4A C-type lectin domain family 4, member A 374166 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2415 OR7A5 olfactory receptor, family 7, subfamily A, member 5 488748 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2416 TSPAN11 tetraspanin 11 339690 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2417 GRIK3 glutamate receptor, ionotropic, kainate 3 1307046 3 3 3 0 0 1 1 0 1 0 0.12 0.87 -2418 CDC37 cell division cycle 37 homolog (S. cerevisiae) 592683 2 2 2 0 1 0 1 0 0 0 0.12 0.87 -2419 ITPK1 inositol 1,3,4-triphosphate 5/6 kinase 366561 1 1 1 1 0 1 0 0 0 0 0.12 0.87 -2420 TEP1 telomerase-associated protein 1 4106700 7 7 7 1 0 4 0 2 1 0 0.12 0.87 -2421 HLA-DRB5 major histocompatibility complex, class II, DR beta 5 207870 1 1 1 1 1 0 0 0 0 0 0.12 0.87 -2422 TTC39B 966342 2 2 2 1 0 0 1 0 1 0 0.12 0.87 -2423 CDH12 cadherin 12, type 2 (N-cadherin 2) 1231503 3 3 3 0 2 0 1 0 0 0 0.12 0.87 -2424 DIRC1 disrupted in renal carcinoma 1 161733 1 1 1 0 1 0 0 0 0 0 0.12 0.87 -2425 KIAA1147 KIAA1147 499902 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2426 MIXL1 Mix1 homeobox-like 1 (Xenopus laevis) 157170 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2427 TTC18 tetratricopeptide repeat domain 18 1713660 4 4 4 0 0 1 1 1 1 0 0.12 0.87 -2428 TRAF3IP1 TNF receptor-associated factor 3 interacting protein 1 906009 2 2 2 0 1 0 1 0 0 0 0.12 0.87 -2429 OR13A1 olfactory receptor, family 13, subfamily A, member 1 501930 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2430 PRPF39 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) 912600 2 2 2 0 0 0 2 0 0 0 0.12 0.87 -2431 PRDM12 PR domain containing 12 242346 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2432 GPATCH2 G patch domain containing 2 794469 2 2 2 1 2 0 0 0 0 0 0.12 0.87 -2433 SLC4A5 solute carrier family 4, sodium bicarbonate cotransporter, member 5 1775007 4 4 4 0 1 1 1 0 1 0 0.12 0.87 -2434 MXD1 MAX dimerization protein 1 310791 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2435 PDCD6 programmed cell death 6 140946 1 1 1 1 0 0 1 0 0 0 0.12 0.87 -2436 LSM11 LSM11, U7 small nuclear RNA associated 328029 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2437 COX7B2 cytochrome c oxidase subunit VIIb2 126750 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2438 PRTG protogenin homolog (Gallus gallus) 1741545 4 4 4 0 2 2 0 0 0 0 0.12 0.87 -2439 TAS2R30 taste receptor, type 2, member 30 488748 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2440 OTUD7B OTU domain containing 7B 1306032 3 3 3 0 2 1 0 0 0 0 0.12 0.87 -2441 TPR translocated promoter region (to activated MET oncogene) 3669159 7 7 7 0 1 2 4 0 0 0 0.12 0.87 -2442 SLC35B1 solute carrier family 35, member B1 493311 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2443 SLC22A2 solute carrier family 22 (organic cation transporter), member 2 867984 2 2 2 0 1 0 0 0 1 0 0.12 0.87 -2444 TXNDC15 thioredoxin domain containing 15 504972 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2445 B3GNT9 206856 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2446 CHML choroideremia-like (Rab escort protein 2) 1001325 2 2 2 1 0 0 1 0 1 0 0.12 0.87 -2447 LYSMD4 LysM, putative peptidoglycan-binding, domain containing 4 461370 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2448 BBS5 Bardet-Biedl syndrome 5 543504 2 2 2 0 2 0 0 0 0 0 0.12 0.87 -2449 RNF207 ring finger protein 207 419796 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2450 BTF3L4 basic transcription factor 3-like 4 251979 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2451 CD3G CD3g molecule, gamma (CD3-TCR complex) 260598 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2452 C20orf26 chromosome 20 open reading frame 26 1935726 4 4 4 1 1 2 0 0 1 0 0.12 0.87 -2453 SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) 417261 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2454 SBDS Shwachman-Bodian-Diamond syndrome 391911 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2455 DEFB115 defensin, beta 115 139425 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2456 CHURC1 churchill domain containing 1 181506 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2457 CDR2L cerebellar degeneration-related protein 2-like 243360 1 1 1 1 0 0 0 0 1 0 0.12 0.87 -2458 ASB5 ankyrin repeat and SOCS box-containing 5 516126 1 1 1 1 0 0 0 0 1 0 0.12 0.87 -2459 SFTPD surfactant, pulmonary-associated protein D 586092 2 2 2 0 0 1 0 1 0 0 0.12 0.87 -2460 CCL23 chemokine (C-C motif) ligand 23 218010 1 1 1 0 0 1 0 0 0 0 0.12 0.87 -2461 MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria 438555 1 1 1 1 0 0 1 0 0 0 0.12 0.87 -2462 HNRNPD 437541 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2463 ZFYVE9 zinc finger, FYVE domain containing 9 2202408 3 3 3 0 1 0 0 0 2 0 0.12 0.87 -2464 IFITM3 interferon induced transmembrane protein 3 (1-8U) 207363 1 1 1 0 1 0 0 0 0 0 0.12 0.87 -2465 PHACTR2 phosphatase and actin regulator 2 992199 2 2 2 0 0 0 0 1 1 0 0.12 0.87 -2466 SORBS2 sorbin and SH3 domain containing 2 1713660 4 4 4 0 0 2 2 0 0 0 0.12 0.87 -2467 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6 1136187 3 3 3 0 1 1 1 0 0 0 0.12 0.87 -2468 SCYL3 SCY1-like 3 (S. cerevisiae) 1156467 3 3 3 0 0 0 1 1 1 0 0.12 0.87 -2469 NDUFAF1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 507000 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2470 TXN thioredoxin 157170 1 1 1 0 1 0 0 0 0 0 0.12 0.87 -2471 TMEM146 transmembrane protein 146 1221870 3 3 3 1 1 1 1 0 0 0 0.12 0.87 -2472 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) 449202 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2473 SAT1 spermidine/spermine N1-acetyltransferase 1 273780 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2474 FAM9B family with sequence similarity 9, member B 298623 1 1 1 2 0 1 0 0 0 0 0.12 0.87 -2475 ARRDC4 arrestin domain containing 4 495846 1 1 1 0 0 0 0 1 0 0 0.12 0.87 -2476 SPAG5 sperm associated antigen 5 1842945 4 4 4 0 3 1 0 0 0 0 0.12 0.87 -2477 HNRPDL heterogeneous nuclear ribonucleoprotein D-like 427908 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2478 HKR1 GLI-Kruppel family member HKR1 1011972 2 2 2 0 0 0 0 0 2 0 0.12 0.87 -2479 ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 3539874 5 5 5 0 2 0 1 0 2 0 0.12 0.87 -2480 AASS aminoadipate-semialdehyde synthase 1456611 3 3 3 0 0 2 0 0 1 0 0.12 0.87 -2481 UBP1 upstream binding protein 1 (LBP-1a) 833508 2 2 2 0 0 1 0 0 1 0 0.12 0.87 -2482 CATSPER4 cation channel, sperm associated 4 638820 2 2 2 1 0 1 1 0 0 0 0.12 0.87 -2483 CHORDC1 cysteine and histidine-rich domain (CHORD)-containing 1 518154 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2484 CLIP2 CAP-GLY domain containing linker protein 2 1261416 4 3 4 1 1 1 0 0 0 2 0.12 0.87 -2485 OPA1 optic atrophy 1 (autosomal dominant) 1587924 3 3 3 2 0 2 0 0 1 0 0.12 0.87 -2486 C11orf52 chromosome 11 open reading frame 52 196716 1 1 1 0 0 0 1 0 0 0 0.12 0.87 -2487 MED27 mediator complex subunit 27 436020 1 1 1 0 0 0 0 0 1 0 0.12 0.87 -2488 PCDH11X protocadherin 11 X-linked 2088840 4 4 4 1 1 1 1 1 0 0 0.13 0.87 -2489 PLEKHA2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 509028 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2490 ANKFY1 ankyrin repeat and FYVE domain containing 1 1704534 4 4 4 0 1 1 2 0 0 0 0.13 0.87 -2491 PCDHGB3 protocadherin gamma subfamily B, 3 1437852 3 3 3 1 2 1 0 0 0 0 0.13 0.87 -2492 MAN2B2 mannosidase, alpha, class 2B, member 2 1317693 3 3 3 1 0 0 2 1 0 0 0.13 0.87 -2493 TRDN triadin 854802 2 2 2 0 0 1 1 0 0 0 0.13 0.87 -2494 TUB tubby homolog (mouse) 784836 2 2 2 0 0 2 0 0 0 0 0.13 0.87 -2495 ATG9B ATG9 autophagy related 9 homolog B (S. cerevisiae) 377208 1 1 1 0 0 1 0 0 0 0 0.13 0.87 -2496 C10orf53 chromosome 10 open reading frame 53 230178 1 1 1 0 0 0 0 1 0 0 0.13 0.87 -2497 GDF9 growth differentiation factor 9 696111 2 2 2 0 0 0 1 1 0 0 0.13 0.87 -2498 PNLIPRP1 pancreatic lipase-related protein 1 736164 2 2 2 0 0 2 0 0 0 0 0.13 0.87 -2499 SIDT2 SID1 transmembrane family, member 2 1317186 3 3 3 2 1 2 0 0 0 0 0.13 0.87 -2500 PRPF4 PRP4 pre-mRNA processing factor 4 homolog (yeast) 823875 2 2 2 1 0 0 1 0 1 0 0.13 0.87 -2501 NCCRP1 259077 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2502 C1orf61 chromosome 1 open reading frame 61 231192 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2503 ZNF548 zinc finger protein 548 828945 2 2 2 0 0 0 1 1 0 0 0.13 0.87 -2504 PSMG2 proteasome (prosome, macropain) assembly chaperone 2 386334 1 1 1 0 0 1 0 0 0 0 0.13 0.87 -2505 PPP2R4 protein phosphatase 2A activator, regulatory subunit 4 493311 2 1 2 0 0 0 0 0 0 2 0.13 0.87 -2506 RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1 1042392 3 3 3 1 0 2 0 0 1 0 0.13 0.87 -2507 RAB40A RAB40A, member RAS oncogene family 424866 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2508 CDK2 cyclin-dependent kinase 2 468975 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2509 BAHD1 bromo adjacent homology domain containing 1 1199055 3 3 3 0 1 2 0 0 0 0 0.13 0.87 -2510 UBE2Q1 ubiquitin-conjugating enzyme E2Q (putative) 1 501930 1 1 1 1 0 0 0 0 1 0 0.13 0.87 -2511 ECH1 enoyl Coenzyme A hydratase 1, peroxisomal 472017 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2512 KCNV1 potassium channel, subfamily V, member 1 532350 2 2 2 1 1 1 0 0 0 0 0.13 0.87 -2513 ANGPTL6 angiopoietin-like 6 429429 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2514 PNO1 partner of NOB1 homolog (S. cerevisiae) 292032 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2515 GLA galactosidase, alpha 668226 2 2 2 0 1 0 1 0 0 0 0.13 0.87 -2516 FAM48B2 family with sequence similarity 48, member B2 1180803 3 3 3 0 0 3 0 0 0 0 0.13 0.87 -2517 SIGLEC10 sialic acid binding Ig-like lectin 10 1083966 2 2 2 0 0 1 0 0 1 0 0.13 0.87 -2518 NUAK1 NUAK family, SNF1-like kinase, 1 904995 2 2 2 0 0 1 1 0 0 0 0.13 0.87 -2519 SRGN serglycin 247923 1 1 1 0 0 1 0 0 0 0 0.13 0.87 -2520 GRP gastrin-releasing peptide 160212 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2521 APOLD1 apolipoprotein L domain containing 1 239811 1 1 1 0 0 1 0 0 0 0 0.13 0.87 -2522 MAPK4 mitogen-activated protein kinase 4 624117 2 2 2 0 2 0 0 0 0 0 0.13 0.87 -2523 MINPP1 multiple inositol polyphosphate histidine phosphatase, 1 499902 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2524 SDCCAG8 serologically defined colon cancer antigen 8 1079403 3 3 3 0 0 0 2 0 1 0 0.13 0.87 -2525 TYK2 tyrosine kinase 2 1473342 3 3 2 1 0 0 3 0 0 0 0.13 0.87 -2526 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 530829 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2527 PMFBP1 polyamine modulated factor 1 binding protein 1 1604148 4 4 4 0 2 0 1 1 0 0 0.13 0.87 -2528 BTC betacellulin 247923 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2529 CXorf57 chromosome X open reading frame 57 1330368 3 3 3 0 0 0 2 0 1 0 0.13 0.87 -2530 SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) 480636 1 1 1 0 1 0 0 0 0 0 0.13 0.87 -2531 TMEM101 transmembrane protein 101 286962 1 1 1 0 0 1 0 0 0 0 0.13 0.87 -2532 CCDC155 805623 2 2 2 0 0 2 0 0 0 0 0.13 0.87 -2533 GCK glucokinase (hexokinase 4) 575952 2 2 2 1 1 1 0 0 0 0 0.13 0.87 -2534 KIAA1310 KIAA1310 1241136 3 3 3 1 1 0 1 0 1 0 0.13 0.87 -2535 EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 448695 1 1 1 1 0 1 0 0 0 0 0.13 0.87 -2536 TROAP trophinin associated protein (tastin) 1236066 3 3 3 1 0 2 1 0 0 0 0.13 0.87 -2537 UXS1 UDP-glucuronate decarboxylase 1 586599 2 2 2 0 2 0 0 0 0 0 0.13 0.87 -2538 GPR161 G protein-coupled receptor 161 768105 2 2 2 1 0 0 1 1 0 0 0.13 0.87 -2539 HLA-DMA major histocompatibility complex, class II, DM alpha 408642 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2540 LONRF2 LON peptidase N-terminal domain and ring finger 2 725517 2 2 2 0 0 2 0 0 0 0 0.13 0.87 -2541 MYO1G myosin IG 953160 2 2 2 0 0 1 0 0 1 0 0.13 0.87 -2542 MAGEB10 melanoma antigen family B, 10 531336 2 2 2 0 0 1 1 0 0 0 0.13 0.87 -2543 THAP7 THAP domain containing 7 178464 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2544 NCOA3 nuclear receptor coactivator 3 2225223 4 4 4 1 1 1 0 1 1 0 0.13 0.87 -2545 DAK dihydroxyacetone kinase 2 homolog (S. cerevisiae) 865956 2 2 2 1 0 1 0 1 0 0 0.13 0.87 -2546 ACOT11 acyl-CoA thioesterase 11 955188 2 2 2 0 0 0 2 0 0 0 0.13 0.87 -2547 ATXN10 ataxin 10 687492 2 2 2 1 0 1 1 0 0 0 0.13 0.87 -2548 CAST calpastatin 1290315 3 3 3 1 1 1 0 0 1 0 0.13 0.87 -2549 SLC13A2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 976989 2 2 2 1 0 2 0 0 0 0 0.13 0.87 -2550 KCNE2 potassium voltage-gated channel, Isk-related family, member 2 190632 1 1 1 0 1 0 0 0 0 0 0.13 0.87 -2551 UBIAD1 UbiA prenyltransferase domain containing 1 519675 1 1 1 0 0 0 0 1 0 0 0.13 0.87 -2552 BMP3 bone morphogenetic protein 3 (osteogenic) 563277 2 2 2 1 2 0 0 0 0 0 0.13 0.87 -2553 TRIM42 tripartite motif-containing 42 1111344 3 3 3 0 0 1 1 1 0 0 0.13 0.87 -2554 TUBB2B tubulin, beta 2B 431457 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2555 DHH desert hedgehog homolog (Drosophila) 315354 1 1 1 0 1 0 0 0 0 0 0.13 0.87 -2556 SREBF2 sterol regulatory element binding transcription factor 2 1491594 3 3 3 0 0 0 0 2 1 0 0.13 0.87 -2557 FAM36A family with sequence similarity 36, member A 165789 1 1 1 0 0 0 0 1 0 0 0.13 0.87 -2558 TUFM Tu translation elongation factor, mitochondrial 685464 2 2 2 1 0 2 0 0 0 0 0.13 0.87 -2559 CYP4F12 cytochrome P450, family 4, subfamily F, polypeptide 12 822354 3 2 3 1 0 1 2 0 0 0 0.13 0.87 -2560 RAP2B RAP2B, member of RAS oncogene family 185055 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2561 NHP2 231699 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2562 WDR45L WDR45-like 509028 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2563 DDAH1 dimethylarginine dimethylaminohydrolase 1 331071 1 1 1 0 1 0 0 0 0 0 0.13 0.87 -2564 KDELR3 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 318903 1 1 1 0 0 0 0 1 0 0 0.13 0.87 -2565 GTPBP8 GTP-binding protein 8 (putative) 431457 1 1 1 1 0 0 0 0 1 0 0.13 0.87 -2566 ZNF544 zinc finger protein 544 1097148 3 3 3 1 1 0 2 0 0 0 0.13 0.87 -2567 LIM2 lens intrinsic membrane protein 2, 19kDa 336648 1 1 1 1 0 1 0 0 0 0 0.13 0.87 -2568 DNAJC28 593697 2 2 2 0 0 0 2 0 0 0 0.13 0.87 -2569 IP6K3 615498 2 2 2 2 1 0 1 0 0 0 0.13 0.87 -2570 FBXO27 F-box protein 27 255528 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2571 ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) 884715 2 2 2 0 1 0 1 0 0 0 0.13 0.87 -2572 C2orf43 chromosome 2 open reading frame 43 508014 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2573 AFF4 AF4/FMR2 family, member 4 1786668 4 4 4 2 2 0 1 1 0 0 0.13 0.87 -2574 ALPK1 alpha-kinase 1 1922037 4 4 4 0 2 1 1 0 0 0 0.13 0.87 -2575 CLDN11 claudin 11 (oligodendrocyte transmembrane protein) 205842 1 1 1 0 0 1 0 0 0 0 0.13 0.87 -2576 SGK2 serum/glucocorticoid regulated kinase 2 629187 2 2 2 1 0 0 1 1 0 0 0.13 0.87 -2577 ZNF281 zinc finger protein 281 1162044 3 3 3 0 0 1 1 1 0 0 0.13 0.87 -2578 LYG1 lysozyme G-like 1 306735 1 1 1 0 0 0 1 0 0 0 0.13 0.87 -2579 FMNL3 formin-like 3 1539759 3 3 3 0 1 1 1 0 0 0 0.13 0.87 -2580 ANGPT4 angiopoietin 4 744783 2 2 2 1 0 1 0 1 0 0 0.13 0.87 -2581 HMCN1 hemicentin 1 8789352 15 14 15 0 4 4 6 0 1 0 0.13 0.87 -2582 HIST3H3 histone cluster 3, H3 210405 1 1 1 0 1 0 0 0 0 0 0.13 0.87 -2583 BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 1588938 2 2 1 2 0 0 0 0 2 0 0.13 0.87 -2584 RGS5 regulator of G-protein signaling 5 286962 1 1 1 0 0 1 0 0 0 0 0.13 0.87 -2585 KDM6B 855816 2 2 2 0 0 1 0 0 1 0 0.13 0.87 -2586 CDHR1 1263951 3 3 3 0 0 3 0 0 0 0 0.13 0.87 -2587 SERPINC1 serpin peptidase inhibitor, clade C (antithrombin), member 1 721461 2 2 2 0 1 0 0 0 1 0 0.13 0.87 -2588 ARHGEF4 Rho guanine nucleotide exchange factor (GEF) 4 779259 2 2 2 0 0 2 0 0 0 0 0.13 0.87 -2589 BCORL1 BCL6 co-repressor-like 1 2622711 5 5 5 2 2 3 0 0 0 0 0.13 0.87 -2590 AIFM2 apoptosis-inducing factor, mitochondrion-associated, 2 559728 2 2 2 0 0 1 1 0 0 0 0.13 0.87 -2591 APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 493311 1 1 1 0 0 0 0 1 0 0 0.13 0.87 -2592 OR4K15 olfactory receptor, family 4, subfamily K, member 15 532857 2 2 2 1 2 0 0 0 0 0 0.13 0.87 -2593 PTPN2 protein tyrosine phosphatase, non-receptor type 2 627159 2 2 2 0 0 0 2 0 0 0 0.13 0.87 -2594 SLC9A8 solute carrier family 9 (sodium/hydrogen exchanger), member 8 902460 2 2 2 1 0 0 1 1 0 0 0.13 0.87 -2595 C9orf41 chromosome 9 open reading frame 41 521196 1 1 1 1 0 0 0 0 1 0 0.13 0.87 -2596 ABT1 activator of basal transcription 1 407628 1 1 1 1 0 1 0 0 0 0 0.13 0.87 -2597 RASGRP2 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 655044 2 2 2 0 1 1 0 0 0 0 0.13 0.87 -2598 LIFR leukemia inhibitory factor receptor alpha 1706562 4 4 4 1 1 1 0 0 2 0 0.13 0.87 -2599 OR5A1 olfactory receptor, family 5, subfamily A, member 1 482664 1 1 1 0 0 0 0 0 1 0 0.13 0.87 -2600 OR8U8 olfactory receptor, family 8, subfamily U, member 8 436527 1 1 1 0 1 0 0 0 0 0 0.13 0.87 -2601 FAM5C family with sequence similarity 5, member C 1180803 3 3 3 1 0 3 0 0 0 0 0.13 0.88 -2602 SNX16 sorting nexin 16 538941 1 1 1 0 0 0 0 0 1 0 0.13 0.88 -2603 LAMB3 laminin, beta 3 1803399 4 4 4 0 1 3 0 0 0 0 0.13 0.88 -2604 MAX MYC associated factor X 407121 1 1 1 0 0 0 0 1 0 0 0.13 0.88 -2605 PSG1 pregnancy specific beta-1-glycoprotein 1 677859 2 2 2 2 0 1 1 0 0 0 0.13 0.88 -2606 HDAC2 histone deacetylase 2 743769 2 2 2 0 1 0 0 0 1 0 0.13 0.88 -2607 HMGN2 high-mobility group nucleosomal binding domain 2 140946 1 1 1 0 1 0 0 0 0 0 0.13 0.88 -2608 UNC93A unc-93 homolog A (C. elegans) 712842 2 2 2 0 1 1 0 0 0 0 0.13 0.88 -2609 RBM15 RNA binding motif protein 15 1260402 2 2 2 0 0 0 1 0 1 0 0.13 0.88 -2610 PCBP2 poly(rC) binding protein 2 586599 2 2 2 0 0 0 1 1 0 0 0.13 0.88 -2611 SLCO4C1 solute carrier organic anion transporter family, member 4C1 1114386 3 3 3 0 0 1 1 1 0 0 0.13 0.88 -2612 POU3F2 POU class 3 homeobox 2 328536 1 1 1 0 0 0 1 0 0 0 0.13 0.88 -2613 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) 1034787 2 2 2 1 0 0 2 0 0 0 0.13 0.88 -2614 UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 369603 1 1 1 0 0 0 0 1 0 0 0.13 0.88 -2615 IL6ST interleukin 6 signal transducer (gp130, oncostatin M receptor) 1428219 3 3 3 0 0 0 2 1 0 0 0.13 0.88 -2616 PCDHB1 protocadherin beta 1 1247727 3 3 3 1 0 1 2 0 0 0 0.13 0.88 -2617 ATG2A ATG2 autophagy related 2 homolog A (S. cerevisiae) 1590966 3 3 3 0 0 2 1 0 0 0 0.13 0.88 -2618 FLJ43860 854295 2 2 2 0 0 1 0 0 1 0 0.13 0.88 -2619 NGFR nerve growth factor receptor (TNFR superfamily, member 16) 492297 1 1 1 0 0 0 0 0 1 0 0.13 0.88 -2620 TAS2R3 taste receptor, type 2, member 3 484185 1 1 1 1 0 0 0 0 1 0 0.13 0.88 -2621 ITGA7 integrin, alpha 7 1827228 5 4 5 0 2 1 2 0 0 0 0.13 0.88 -2622 SLC35E3 solute carrier family 35, member E3 485706 1 1 1 0 0 0 0 0 1 0 0.13 0.88 -2623 WDYHV1 281385 1 1 1 0 0 1 0 0 0 0 0.13 0.88 -2624 PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein-like 527787 1 1 1 0 0 0 0 0 1 0 0.13 0.88 -2625 PSKH1 protein serine kinase H1 619047 2 2 2 0 1 0 0 0 1 0 0.13 0.88 -2626 SSR4 signal sequence receptor, delta (translocon-associated protein delta) 178971 1 1 1 0 1 0 0 0 0 0 0.13 0.88 -2627 PKD2L1 polycystic kidney disease 2-like 1 1258374 2 2 2 0 1 0 0 0 1 0 0.13 0.88 -2628 STX7 syntaxin 7 416754 1 1 1 0 0 0 0 0 1 0 0.13 0.88 -2629 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 1483989 3 3 3 1 0 0 1 2 0 0 0.13 0.88 -2630 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 381771 1 1 1 0 0 1 0 0 0 0 0.13 0.88 -2631 ICA1L islet cell autoantigen 1,69kDa-like 766077 2 2 2 0 0 0 2 0 0 0 0.13 0.88 -2632 DAO D-amino-acid oxidase 549588 1 1 1 1 0 0 0 0 1 0 0.13 0.88 -2633 CEACAM3 carcinoembryonic antigen-related cell adhesion molecule 3 380757 1 1 1 0 0 1 0 0 0 0 0.13 0.88 -2634 PLCXD2 phosphatidylinositol-specific phospholipase C, X domain containing 2 472017 1 1 1 1 0 1 0 0 0 0 0.13 0.88 -2635 RPS10 ribosomal protein S10 262626 1 1 1 0 1 0 0 0 0 0 0.13 0.88 -2636 KCTD7 potassium channel tetramerisation domain containing 7 374166 1 1 1 0 1 0 0 0 0 0 0.13 0.88 -2637 KIAA0895 806637 2 2 2 0 1 0 1 0 0 0 0.13 0.88 -2638 TSPO2 266175 1 1 1 0 0 1 0 0 0 0 0.13 0.88 -2639 OR2B2 olfactory receptor, family 2, subfamily B, member 2 546546 2 2 2 0 0 1 1 0 0 0 0.13 0.88 -2640 OR5H6 olfactory receptor, family 5, subfamily H, member 6 497874 1 1 1 0 0 0 0 1 0 0 0.13 0.88 -2641 C1orf101 chromosome 1 open reading frame 101 1295385 3 3 3 1 1 0 2 0 0 0 0.13 0.88 -2642 ZSCAN5A 764049 3 2 3 0 1 0 1 1 0 0 0.13 0.88 -2643 CRB3 crumbs homolog 3 (Drosophila) 185055 1 1 1 0 0 0 1 0 0 0 0.13 0.88 -2644 YAF2 YY1 associated factor 2 202293 1 1 1 0 1 0 0 0 0 0 0.13 0.88 -2645 PLA2G15 492297 1 1 1 0 0 0 1 0 0 0 0.13 0.88 -2646 IL12B interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40) 512577 1 1 1 0 0 0 0 1 0 0 0.13 0.88 -2647 RRM2 ribonucleotide reductase M2 polypeptide 521196 1 1 1 1 0 0 0 1 0 0 0.13 0.88 -2648 IAPP islet amyloid polypeptide 140946 1 1 1 0 0 1 0 0 0 0 0.13 0.88 -2649 MRPL49 mitochondrial ribosomal protein L49 220545 1 1 1 0 0 0 0 1 0 0 0.13 0.88 -2650 NUAK2 NUAK family, SNF1-like kinase, 2 842127 2 2 2 2 1 1 0 0 0 0 0.13 0.88 -2651 IL27 interleukin 27 381264 1 1 1 0 0 0 0 1 0 0 0.13 0.88 -2652 PROX1 prospero homeobox 1 1130610 3 3 3 0 2 1 0 0 0 0 0.14 0.88 -2653 DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) 1253811 3 3 3 0 2 0 0 0 1 0 0.14 0.88 -2654 PSD pleckstrin and Sec7 domain containing 1355718 3 3 3 0 0 2 0 0 1 0 0.14 0.88 -2655 NAGK N-acetylglucosamine kinase 527787 1 1 1 0 0 0 0 1 0 0 0.14 0.88 -2656 HIST1H2AE histone cluster 1, H2ae 201279 1 1 1 2 0 1 0 0 0 0 0.14 0.88 -2657 OR52H1 olfactory receptor, family 52, subfamily H, member 1 490269 1 1 1 1 0 0 0 0 1 0 0.14 0.88 -2658 PLIN4 1491594 3 3 3 1 1 2 0 0 0 0 0.14 0.88 -2659 KCNN3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 1076361 2 2 2 0 0 0 0 0 2 0 0.14 0.88 -2660 NPTX2 neuronal pentraxin II 375180 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2661 ZNF781 zinc finger protein 781 500916 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2662 CDK15 609921 2 2 2 0 1 1 0 0 0 0 0.14 0.88 -2663 COBRA1 cofactor of BRCA1 557700 1 1 1 2 0 0 0 0 1 0 0.14 0.88 -2664 INSRR insulin receptor-related receptor 1908855 4 4 4 0 0 1 2 0 1 0 0.14 0.88 -2665 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 818298 2 2 2 0 1 0 0 0 1 0 0.14 0.88 -2666 KCNQ5 potassium voltage-gated channel, KQT-like subfamily, member 5 1274598 3 3 3 0 1 1 0 1 0 0 0.14 0.88 -2667 ANKRD16 ankyrin repeat domain 16 403572 1 1 1 1 0 1 0 0 0 0 0.14 0.88 -2668 SIRPG signal-regulatory protein gamma 556179 2 2 2 0 0 1 1 0 0 0 0.14 0.88 -2669 WDFY2 WD repeat and FYVE domain containing 2 595218 2 2 2 1 1 1 0 0 0 0 0.14 0.88 -2670 SPERT spermatid associated 470496 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2671 RTN4RL1 reticulon 4 receptor-like 1 355914 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2672 NDUFA2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa 171873 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2673 TMEM71 transmembrane protein 71 468468 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2674 ADAMDEC1 ADAM-like, decysin 1 744783 2 2 2 3 0 1 1 0 0 0 0.14 0.88 -2675 STAP1 signal transducing adaptor family member 1 468468 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2676 SFRS11 splicing factor, arginine/serine-rich 11 761514 2 2 2 0 0 1 0 1 0 0 0.14 0.88 -2677 ZNF878 890799 2 2 2 1 1 0 1 0 0 0 0.14 0.88 -2678 RIN2 Ras and Rab interactor 2 1342029 3 3 3 1 0 0 0 3 0 0 0.14 0.88 -2679 FEZF2 FEZ family zinc finger 2 273780 1 1 1 1 0 1 0 0 0 0 0.14 0.88 -2680 NAA10 301665 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2681 NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 1239108 3 3 3 0 1 1 1 0 0 0 0.14 0.88 -2682 MCAM melanoma cell adhesion molecule 950118 2 2 2 1 0 0 0 2 0 0 0.14 0.88 -2683 CHD3 chromodomain helicase DNA binding protein 3 3023241 5 5 5 0 1 1 1 0 2 0 0.14 0.88 -2684 STRN striatin, calmodulin binding protein 1103739 3 3 3 1 1 1 0 0 1 0 0.14 0.88 -2685 DRG1 developmentally regulated GTP binding protein 1 577980 2 2 2 0 0 0 0 2 0 0 0.14 0.88 -2686 AR androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) 1118442 3 3 3 0 0 2 0 0 1 0 0.14 0.88 -2687 INHBC inhibin, beta C 540969 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2688 USP36 ubiquitin specific peptidase 36 1655862 3 3 3 4 0 2 0 0 1 0 0.14 0.88 -2689 FTSJD1 1174719 3 3 3 0 0 0 1 1 1 0 0.14 0.88 -2690 CDH19 cadherin 19, type 2 1198041 3 3 3 0 0 1 1 1 0 0 0.14 0.88 -2691 CCDC113 coiled-coil domain containing 113 539955 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2692 PRPF38A PRP38 pre-mRNA processing factor 38 (yeast) domain containing A 496353 1 1 1 0 0 0 0 1 0 0 0.14 0.88 -2693 RBM14 RNA binding motif protein 14 916149 2 2 2 0 0 0 0 1 1 0 0.14 0.88 -2694 GRHL2 grainyhead-like 2 (Drosophila) 984594 2 2 2 0 1 0 0 0 1 0 0.14 0.88 -2695 FAAH fatty acid amide hydrolase 693576 2 2 2 1 0 2 0 0 0 0 0.14 0.88 -2696 HR hairless homolog (mouse) 944541 2 2 2 1 0 2 0 0 0 0 0.14 0.88 -2697 GPSM3 G-protein signaling modulator 3 (AGS3-like, C. elegans) 252993 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2698 HEG1 HEG homolog 1 (zebrafish) 1880970 4 4 4 0 1 0 3 0 0 0 0.14 0.88 -2699 MLL5 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) 2878239 4 4 4 0 0 2 0 0 2 0 0.14 0.88 -2700 SLC39A1 solute carrier family 39 (zinc transporter), member 1 458328 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2701 LEPR leptin receptor 1821144 3 3 3 1 1 1 0 0 1 0 0.14 0.88 -2702 HSPD1 heat shock 60kDa protein 1 (chaperonin) 895362 2 2 2 1 0 1 1 0 0 0 0.14 0.88 -2703 ZC3H3 zinc finger CCCH-type containing 3 517647 1 1 1 2 0 0 0 1 0 0 0.14 0.88 -2704 ALDH3B2 aldehyde dehydrogenase 3 family, member B2 592176 2 2 2 0 1 0 0 1 0 0 0.14 0.88 -2705 TYRP1 tyrosinase-related protein 1 832494 2 2 2 0 0 0 1 0 1 0 0.14 0.88 -2706 CD300LF CD300 molecule-like family member f 456807 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2707 TUBD1 tubulin, delta 1 706758 2 2 2 0 1 0 1 0 0 0 0.14 0.88 -2708 NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase) 364533 1 1 1 0 1 0 0 0 0 0 0.14 0.88 -2709 SCNM1 sodium channel modifier 1 365547 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2710 EHF ets homologous factor 474045 1 1 1 0 0 0 0 1 0 0 0.14 0.88 -2711 MIER1 mesoderm induction early response 1 homolog (Xenopus laevis) 923754 2 2 2 0 0 0 1 0 1 0 0.14 0.88 -2712 TAS2R46 taste receptor, type 2, member 46 473538 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2713 DNAJC30 326001 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2714 ITPR1 inositol 1,4,5-triphosphate receptor, type 1 4245618 7 7 7 1 2 1 1 1 2 0 0.14 0.88 -2715 BRPF3 bromodomain and PHD finger containing, 3 1766895 4 4 4 0 1 0 2 1 0 0 0.14 0.88 -2716 CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1 1689831 4 4 4 0 1 1 1 0 1 0 0.14 0.88 -2717 STK17B serine/threonine kinase 17b 581529 2 2 2 0 0 1 0 0 1 0 0.14 0.88 -2718 GFRA2 GDNF family receptor alpha 2 204321 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2719 GRXCR2 384813 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2720 ENSA endosulfine alpha 304707 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2721 GRLF1 glucocorticoid receptor DNA binding factor 1 2287584 4 4 4 3 1 1 0 0 2 0 0.14 0.88 -2722 RPL18A ribosomal protein L18a 267189 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2723 BMP6 bone morphogenetic protein 6 457314 1 1 1 0 0 0 0 1 0 0 0.14 0.88 -2724 PLK2 polo-like kinase 2 (Drosophila) 932880 2 2 2 0 0 0 0 0 2 0 0.14 0.88 -2725 TMEM207 transmembrane protein 207 233727 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2726 ALS2CR11 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 1030224 2 2 2 1 1 0 0 0 1 0 0.14 0.88 -2727 AIG1 androgen-induced 1 365547 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2728 NTNG1 netrin G1 784836 2 2 2 1 1 0 1 0 0 0 0.14 0.88 -2729 USP5 ubiquitin specific peptidase 5 (isopeptidase T) 1347099 4 3 4 0 1 2 1 0 0 0 0.14 0.88 -2730 C15orf17 chromosome 15 open reading frame 17 192153 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2731 COMMD6 COMM domain containing 6 160719 1 1 1 0 1 0 0 0 0 0 0.14 0.88 -2732 CCDC144A coiled-coil domain containing 144A 1949415 4 4 4 0 0 2 1 1 0 0 0.14 0.88 -2733 RAPGEF4 Rap guanine nucleotide exchange factor (GEF) 4 1575249 2 2 2 1 0 0 0 0 2 0 0.14 0.88 -2734 S1PR3 578487 2 2 2 1 0 0 1 1 0 0 0.14 0.88 -2735 CATSPERG 1299441 3 3 3 0 0 2 1 0 0 0 0.14 0.88 -2736 RHOT1 ras homolog gene family, member T1 1074333 3 3 3 1 0 1 1 1 0 0 0.14 0.88 -2737 TMEM125 transmembrane protein 125 287469 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2738 CCR3 chemokine (C-C motif) receptor 3 549081 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2739 TMEM214 1005381 2 2 2 0 0 0 1 1 0 0 0.14 0.88 -2740 PLA1A phospholipase A1 member A 715884 2 2 2 2 1 0 0 0 1 0 0.14 0.88 -2741 C3orf38 chromosome 3 open reading frame 38 500916 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2742 GCLM glutamate-cysteine ligase, modifier subunit 366561 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2743 SYT8 synaptotagmin VIII 255528 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2744 IRF6 interferon regulatory factor 6 726024 2 2 2 0 0 1 0 1 0 0 0.14 0.88 -2745 HSDL2 hydroxysteroid dehydrogenase like 2 648960 2 2 2 0 1 0 1 0 0 0 0.14 0.88 -2746 GZMH granzyme H (cathepsin G-like 2, protein h-CCPX) 385827 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2747 TMEM132D transmembrane protein 132D 1293357 3 3 3 2 1 2 0 0 0 0 0.14 0.88 -2748 NXF1 nuclear RNA export factor 1 1013493 2 2 2 1 0 1 1 0 0 0 0.14 0.88 -2749 TMEM9B TMEM9 domain family, member B 257556 1 1 1 0 1 0 0 0 0 0 0.14 0.88 -2750 GYG1 glycogenin 1 573924 2 2 2 0 1 0 1 0 0 0 0.14 0.88 -2751 PPIL5 peptidylprolyl isomerase (cyclophilin)-like 5 544518 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2752 MYO5B myosin VB 2869620 5 5 4 1 1 2 2 0 0 0 0.14 0.88 -2753 STH saitohin 191139 1 1 1 0 1 0 0 0 0 0 0.14 0.88 -2754 PLAGL2 pleiomorphic adenoma gene-like 2 759993 2 2 2 0 0 0 0 1 1 0 0.14 0.88 -2755 OR5D18 olfactory receptor, family 5, subfamily D, member 18 479622 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2756 OR51A4 olfactory receptor, family 51, subfamily A, member 4 479622 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2757 TLR7 toll-like receptor 7 1601106 3 3 3 0 1 1 0 0 1 0 0.14 0.88 -2758 ESCO1 establishment of cohesion 1 homolog 1 (S. cerevisiae) 1297413 3 3 3 0 1 0 0 1 1 0 0.14 0.88 -2759 CNPY1 canopy 1 homolog (zebrafish) 147537 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2760 MED8 mediator complex subunit 8 477594 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2761 PRKAB1 protein kinase, AMP-activated, beta 1 non-catalytic subunit 386334 1 1 1 0 1 0 0 0 0 0 0.14 0.88 -2762 PCDHB4 protocadherin beta 4 1197027 3 3 3 1 2 1 0 0 0 0 0.14 0.88 -2763 VASH1 vasohibin 1 200265 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2764 LPAR6 526773 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2765 CHRM2 cholinergic receptor, muscarinic 2 712335 2 2 2 1 0 2 0 0 0 0 0.14 0.88 -2766 BCL2L12 BCL2-like 12 (proline rich) 315354 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2767 IL12RB1 interleukin 12 receptor, beta 1 909051 2 2 2 0 1 0 0 0 1 0 0.14 0.88 -2768 OR6N1 olfactory receptor, family 6, subfamily N, member 1 478101 1 1 1 1 0 0 0 0 1 0 0.14 0.88 -2769 BCL9L B-cell CLL/lymphoma 9-like 1700985 3 3 3 2 0 1 0 1 1 0 0.14 0.88 -2770 KCTD10 potassium channel tetramerisation domain containing 10 491790 1 1 1 0 0 0 0 1 0 0 0.14 0.88 -2771 MYF6 myogenic factor 6 (herculin) 375687 1 1 1 0 1 0 0 0 0 0 0.14 0.88 -2772 SAA1 serum amyloid A1 193167 1 1 1 0 1 0 0 0 0 0 0.14 0.88 -2773 LRRIQ1 leucine-rich repeats and IQ motif containing 1 2675439 5 5 5 0 0 3 2 0 0 0 0.14 0.88 -2774 PSMD9 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 280878 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2775 SRCIN1 548574 1 1 1 0 0 0 0 1 0 0 0.14 0.88 -2776 LCP1 lymphocyte cytosolic protein 1 (L-plastin) 985608 2 2 2 0 1 0 0 1 0 0 0.14 0.88 -2777 GAR1 343746 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2778 CYR61 cysteine-rich, angiogenic inducer, 61 465933 1 1 1 0 0 1 0 0 0 0 0.14 0.88 -2779 GPR50 G protein-coupled receptor 50 944034 2 2 2 0 0 2 0 0 0 0 0.14 0.88 -2780 PRMT3 protein arginine methyltransferase 3 773682 2 2 2 0 0 2 0 0 0 0 0.14 0.88 -2781 WDR74 WD repeat domain 74 525759 1 1 1 0 0 0 0 0 1 0 0.14 0.88 -2782 RBM12 RNA binding motif protein 12 1421121 3 3 3 0 0 2 0 0 1 0 0.14 0.88 -2783 TAS2R8 taste receptor, type 2, member 8 473538 1 1 1 0 0 0 1 0 0 0 0.14 0.88 -2784 KRTAP10-5 keratin associated protein 10-5 415740 1 1 1 0 0 0 1 0 0 0 0.14 0.89 -2785 ZNF660 zinc finger protein 660 507000 1 1 1 0 0 0 0 0 1 0 0.14 0.89 -2786 MCC mutated in colorectal cancers 1532661 3 3 3 0 0 1 1 0 1 0 0.14 0.89 -2787 LDHC lactate dehydrogenase C 520689 1 1 1 0 0 1 0 0 0 0 0.14 0.89 -2788 PARP12 poly (ADP-ribose) polymerase family, member 12 895362 2 2 2 0 1 0 1 0 0 0 0.14 0.89 -2789 NEB nebulin 10434060 13 13 13 0 1 3 5 0 4 0 0.14 0.89 -2790 SLC13A4 solute carrier family 13 (sodium/sulfate symporters), member 4 933894 2 2 2 0 0 2 0 0 0 0 0.14 0.89 -2791 FKBP15 FK506 binding protein 15, 133kDa 1755234 4 4 4 0 0 1 2 0 1 0 0.14 0.89 -2792 CYP2C18 cytochrome P450, family 2, subfamily C, polypeptide 18 765063 2 2 2 0 0 0 0 0 2 0 0.14 0.89 -2793 YME1L1 YME1-like 1 (S. cerevisiae) 1196013 3 3 3 0 0 1 1 1 0 0 0.14 0.89 -2794 NPTN neuroplastin 574938 1 1 1 0 0 0 0 0 1 0 0.14 0.89 -2795 TTPA tocopherol (alpha) transfer protein 329043 1 1 1 0 0 0 0 1 0 0 0.14 0.89 -2796 UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) 758472 2 2 2 1 2 0 0 0 0 0 0.14 0.89 -2797 TSPAN13 tetraspanin 13 323973 1 1 1 0 0 1 0 0 0 0 0.14 0.89 -2798 PPM1E protein phosphatase 1E (PP2C domain containing) 979017 2 2 2 0 1 0 0 1 0 0 0.14 0.89 -2799 TRIP11 thyroid hormone receptor interactor 11 3053154 5 5 5 1 0 0 4 0 1 0 0.14 0.89 -2800 C4orf23 chromosome 4 open reading frame 23 576966 1 1 1 0 0 0 0 0 1 0 0.14 0.89 -2801 WFDC11 WAP four-disulfide core domain 11 139932 1 1 1 0 0 0 1 0 0 0 0.14 0.89 -2802 KIAA1383 KIAA1383 1326819 3 3 3 1 0 1 0 1 1 0 0.14 0.89 -2803 ZCCHC6 zinc finger, CCHC domain containing 6 2326623 5 4 5 1 0 1 1 1 2 0 0.14 0.89 -2804 PANK4 pantothenate kinase 4 487734 1 1 1 0 0 0 0 1 0 0 0.14 0.89 -2805 GYPB glycophorin B (MNS blood group) 145002 1 1 1 0 0 1 0 0 0 0 0.14 0.89 -2806 DPF1 D4, zinc and double PHD fingers family 1 442104 1 1 1 0 0 0 0 1 0 0 0.14 0.89 -2807 ZNF835 677352 2 2 2 1 0 1 1 0 0 0 0.14 0.89 -2808 IFNB1 interferon, beta 1, fibroblast 287976 1 1 1 1 1 0 0 0 0 0 0.14 0.89 -2809 LRRN3 leucine rich repeat neuronal 3 1080417 2 2 2 0 0 0 1 0 1 0 0.14 0.89 -2810 SYT17 synaptotagmin XVII 729066 2 2 2 0 1 0 0 0 1 0 0.14 0.89 -2811 MUC15 mucin 15, cell surface associated 534885 1 1 1 0 0 1 0 0 0 0 0.14 0.89 -2812 PCID2 PCI domain containing 2 616512 2 2 2 0 0 1 1 0 0 0 0.14 0.89 -2813 DKK4 dickkopf homolog 4 (Xenopus laevis) 350337 1 1 1 0 1 0 0 0 0 0 0.14 0.89 -2814 PPP2R3C protein phosphatase 2 (formerly 2A), regulatory subunit B'', gamma 716898 3 2 3 0 0 0 3 0 0 0 0.14 0.89 -2815 AGK acylglycerol kinase 673803 2 2 2 0 1 0 1 0 0 0 0.14 0.89 -2816 EBF2 early B-cell factor 2 878124 2 2 2 0 0 1 1 0 0 0 0.14 0.89 -2817 RELL2 RELT-like 2 474552 1 1 1 0 0 1 0 0 0 0 0.14 0.89 -2818 CHCHD1 coiled-coil-helix-coiled-coil-helix domain containing 1 187083 1 1 1 0 0 1 0 0 0 0 0.14 0.89 -2819 ARID4B AT rich interactive domain 4B (RBP1-like) 2043717 4 4 4 1 0 0 3 0 1 0 0.14 0.89 -2820 ARHGDIB Rho GDP dissociation inhibitor (GDI) beta 317382 1 1 1 0 0 1 0 0 0 0 0.14 0.89 -2821 ERO1L ERO1-like (S. cerevisiae) 685971 2 2 2 0 0 0 1 1 0 0 0.15 0.89 -2822 TTC21B tetratricopeptide repeat domain 21B 2049294 3 3 3 0 1 1 0 0 1 0 0.15 0.89 -2823 CD2BP2 CD2 (cytoplasmic tail) binding protein 2 532350 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2824 TOR1AIP2 torsin A interacting protein 2 927303 2 2 2 0 0 1 1 0 0 0 0.15 0.89 -2825 MTFR1 mitochondrial fission regulator 1 572910 2 2 2 0 0 0 2 0 0 0 0.15 0.89 -2826 CSNK2A2 casein kinase 2, alpha prime polypeptide 501423 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2827 PCYT1B phosphate cytidylyltransferase 1, choline, beta 631722 2 2 2 0 0 1 0 1 0 0 0.15 0.89 -2828 FOXD3 forkhead box D3 191139 1 1 1 1 1 0 0 0 0 0 0.15 0.89 -2829 KLHL4 kelch-like 4 (Drosophila) 1151397 2 2 2 0 0 1 0 0 1 0 0.15 0.89 -2830 FARP2 FERM, RhoGEF and pleckstrin domain protein 2 1637103 3 3 3 0 1 0 0 0 2 0 0.15 0.89 -2831 CNKSR2 connector enhancer of kinase suppressor of Ras 2 1622907 3 3 3 0 0 0 0 1 2 0 0.15 0.89 -2832 CEMP1 cementum protein 1 339183 1 1 1 1 0 0 1 0 0 0 0.15 0.89 -2833 WDR91 WD repeat domain 91 1103739 2 2 2 0 0 0 0 2 0 0 0.15 0.89 -2834 CRTC2 CREB regulated transcription coactivator 2 1055574 2 2 2 1 0 1 1 0 0 0 0.15 0.89 -2835 FAP fibroblast activation protein, alpha 1210209 3 3 3 0 0 0 2 0 1 0 0.15 0.89 -2836 ERCC1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 533871 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2837 TSPAN1 tetraspanin 1 382278 1 1 1 0 0 0 0 1 0 0 0.15 0.89 -2838 HEYL hairy/enhancer-of-split related with YRPW motif-like 309270 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2839 MEAF6 275808 1 1 1 0 0 0 0 1 0 0 0.15 0.89 -2840 GLOD4 glyoxalase domain containing 4 425373 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2841 SLC15A1 solute carrier family 15 (oligopeptide transporter), member 1 1120977 3 3 3 0 0 2 1 0 0 0 0.15 0.89 -2842 KCNIP1 Kv channel interacting protein 1 411684 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2843 LRCH2 leucine-rich repeats and calponin homology (CH) domain containing 2 754923 2 2 2 0 1 0 0 0 1 0 0.15 0.89 -2844 DUSP13 dual specificity phosphatase 13 548574 1 1 1 0 0 1 0 0 0 0 0.15 0.89 -2845 CPNE3 copine III 848718 2 2 2 0 1 0 1 0 0 0 0.15 0.89 -2846 ZNF167 zinc finger protein 167 1156467 3 3 3 0 0 3 0 0 0 0 0.15 0.89 -2847 CD86 CD86 molecule 516126 1 1 1 1 0 0 0 1 0 0 0.15 0.89 -2848 AMHR2 anti-Mullerian hormone receptor, type II 835029 2 2 2 0 1 0 1 0 0 0 0.15 0.89 -2849 G6PC2 glucose-6-phosphatase, catalytic, 2 551616 1 1 1 0 0 1 0 0 0 0 0.15 0.89 -2850 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2 653016 2 2 2 0 0 0 2 0 0 0 0.15 0.89 -2851 INHBE inhibin, beta E 537927 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2852 PAX3 paired box 3 708279 2 2 2 0 0 1 1 0 0 0 0.15 0.89 -2853 POLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa 494832 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2854 S100A7A S100 calcium binding protein A7A 159198 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2855 APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like) 976989 2 2 2 0 0 0 1 0 1 0 0.15 0.89 -2856 GULP1 GULP, engulfment adaptor PTB domain containing 1 484185 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2857 ZNF460 zinc finger protein 460 845169 2 2 2 0 1 0 1 0 0 0 0.15 0.89 -2858 OAS1 2',5'-oligoadenylate synthetase 1, 40/46kDa 721968 2 2 2 0 0 0 1 1 0 0 0.15 0.89 -2859 BAZ2B bromodomain adjacent to zinc finger domain, 2B 3370029 6 6 6 0 0 1 2 1 2 0 0.15 0.89 -2860 TBC1D19 TBC1 domain family, member 19 779766 2 2 2 0 1 1 0 0 0 0 0.15 0.89 -2861 ACTG1 actin, gamma 1 569361 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2862 STK38L serine/threonine kinase 38 like 733629 2 2 2 0 0 1 1 0 0 0 0.15 0.89 -2863 FAM160A2 1450020 2 2 2 0 0 1 0 0 1 0 0.15 0.89 -2864 ESYT1 1758783 4 4 4 1 1 2 1 0 0 0 0.15 0.89 -2865 WDR72 WD repeat domain 72 1716195 4 3 4 1 0 2 0 1 1 0 0.15 0.89 -2866 GUCA1A guanylate cyclase activator 1A (retina) 315354 1 1 1 0 1 0 0 0 0 0 0.15 0.89 -2867 BAIAP2 BAI1-associated protein 2 429936 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2868 UBR3 ubiquitin protein ligase E3 component n-recognin 3 1213758 3 3 3 0 1 0 1 0 1 0 0.15 0.89 -2869 AP1S3 adaptor-related protein complex 1, sigma 3 subunit 242346 1 1 1 0 0 1 0 0 0 0 0.15 0.89 -2870 SOD1 superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult)) 207363 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2871 OPN1LW opsin 1 (cone pigments), long-wave-sensitive 509028 1 1 1 2 1 0 0 0 0 0 0.15 0.89 -2872 GBP6 guanylate binding protein family, member 6 984594 2 2 2 1 0 1 1 0 0 0 0.15 0.89 -2873 CHPT1 choline phosphotransferase 1 496860 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2874 PDE1A phosphodiesterase 1A, calmodulin-dependent 883194 2 2 2 0 2 0 0 0 0 0 0.15 0.89 -2875 FBXO3 F-box protein 3 690027 2 2 2 0 0 1 1 0 0 0 0.15 0.89 -2876 OR2Z1 olfactory receptor, family 2, subfamily Z, member 1 481143 1 1 1 1 0 1 0 0 0 0 0.15 0.89 -2877 EMR2 egf-like module containing, mucin-like, hormone receptor-like 2 1160016 3 3 3 1 1 1 1 0 0 0 0.15 0.89 -2878 C3orf24 chromosome 3 open reading frame 24 272766 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2879 TCHHL1 trichohyalin-like 1 1380561 3 3 3 0 0 2 0 1 0 0 0.15 0.89 -2880 CKAP2 cytoskeleton associated protein 2 1021098 2 2 2 0 0 1 1 0 0 0 0.15 0.89 -2881 KIAA2013 KIAA2013 599274 1 1 1 1 0 0 0 0 1 0 0.15 0.89 -2882 IL17RC interleukin 17 receptor C 862914 2 2 2 2 0 2 0 0 0 0 0.15 0.89 -2883 CPN1 carboxypeptidase N, polypeptide 1 716391 2 2 2 0 1 1 0 0 0 0 0.15 0.89 -2884 NR3C2 nuclear receptor subfamily 3, group C, member 2 1465230 3 3 3 1 0 1 2 0 0 0 0.15 0.89 -2885 MLL4 2317497 4 4 4 0 0 1 0 1 2 0 0.15 0.89 -2886 SNRPC small nuclear ribonucleoprotein polypeptide C 255528 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2887 HDX highly divergent homeobox 1069263 2 2 2 1 0 1 0 1 0 0 0.15 0.89 -2888 STRN3 striatin, calmodulin binding protein 3 1105260 2 2 2 2 0 0 0 1 1 0 0.15 0.89 -2889 HTR3E 5-hydroxytryptamine (serotonin) receptor 3, family member E 734136 2 2 2 0 0 1 1 0 0 0 0.15 0.89 -2890 FAM47A family with sequence similarity 47, member A 1206660 4 3 4 0 2 2 0 0 0 0 0.15 0.89 -2891 OR8K1 olfactory receptor, family 8, subfamily K, member 1 488748 1 1 1 2 0 1 0 0 0 0 0.15 0.89 -2892 MINK1 misshapen-like kinase 1 (zebrafish) 1024647 2 2 2 0 0 2 0 0 0 0 0.15 0.89 -2893 IL1F6 interleukin 1 family, member 6 (epsilon) 249951 1 1 1 0 0 0 0 1 0 0 0.15 0.89 -2894 FGFBP1 fibroblast growth factor binding protein 1 359463 1 1 1 0 0 0 0 0 1 0 0.15 0.89 -2895 LIG3 ligase III, DNA, ATP-dependent 1604148 3 3 3 0 0 0 2 1 0 0 0.15 0.89 -2896 ITGB4 integrin, beta 4 2111655 4 4 4 1 1 2 0 1 0 0 0.15 0.89 -2897 KRTAP5-5 keratin associated protein 5-5 364026 1 1 1 1 0 0 0 0 1 0 0.15 0.89 -2898 BAG3 BCL2-associated athanogene 3 790920 2 2 2 0 0 1 0 0 1 0 0.15 0.89 -2899 EXTL3 exostoses (multiple)-like 3 1409460 3 3 3 0 0 0 1 1 1 0 0.15 0.89 -2900 SSX7 synovial sarcoma, X breakpoint 7 299637 1 1 1 0 0 1 0 0 0 0 0.15 0.89 -2901 TMEM18 transmembrane protein 18 193674 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2902 TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 484692 1 1 1 1 0 1 0 0 0 0 0.15 0.89 -2903 RDH14 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) 315354 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2904 LPHN3 latrophilin 3 1923051 4 4 4 0 0 2 1 0 1 0 0.15 0.89 -2905 MOBKL1A MOB1, Mps One Binder kinase activator-like 1A (yeast) 333099 1 1 1 1 0 0 1 0 0 0 0.15 0.89 -2906 PHKA2 phosphorylase kinase, alpha 2 (liver) 1915446 4 4 4 3 3 0 0 0 1 0 0.15 0.89 -2907 TMEM150A 406614 1 1 1 0 0 1 0 0 0 0 0.15 0.89 -2908 EFR3A EFR3 homolog A (S. cerevisiae) 1273077 2 2 2 1 0 1 0 0 1 0 0.15 0.89 -2909 SPRED1 sprouty-related, EVH1 domain containing 1 672789 2 2 2 0 1 0 0 1 0 0 0.15 0.89 -2910 RPS4X ribosomal protein S4, X-linked 412191 1 1 1 0 0 0 1 0 0 0 0.15 0.89 -2911 NR6A1 nuclear receptor subfamily 6, group A, member 1 698646 2 2 2 0 0 1 1 0 0 0 0.15 0.89 -2912 KIAA0776 KIAA0776 1206660 3 3 3 1 0 0 3 0 0 0 0.15 0.89 -2913 AURKC aurora kinase C 454272 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2914 FAM53C family with sequence similarity 53, member C 605865 1 1 1 1 0 0 0 0 1 0 0.15 0.90 -2915 ERCC6 excision repair cross-complementing rodent repair deficiency, complementation group 6 2312934 5 5 5 1 0 2 2 1 0 0 0.15 0.90 -2916 SFRS4 splicing factor, arginine/serine-rich 4 702195 2 2 2 0 1 0 0 1 0 0 0.15 0.90 -2917 HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 1125033 2 2 2 0 0 0 0 0 2 0 0.15 0.90 -2918 VPS24 vacuolar protein sorting 24 homolog (S. cerevisiae) 351351 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2919 GZMK granzyme K (granzyme 3; tryptase II) 413205 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2920 C10orf119 chromosome 10 open reading frame 119 979017 2 2 2 0 0 0 1 0 1 0 0.15 0.90 -2921 ANGPTL3 angiopoietin-like 3 715377 2 2 2 0 0 0 2 0 0 0 0.15 0.90 -2922 COPS3 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) 639327 2 2 2 0 0 1 0 1 0 0 0.15 0.90 -2923 C7orf60 561249 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2924 C12orf48 chromosome 12 open reading frame 48 777231 2 2 2 0 0 0 2 0 0 0 0.15 0.90 -2925 FAM53B family with sequence similarity 53, member B 338676 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2926 FEZ1 fasciculation and elongation protein zeta 1 (zygin I) 618033 2 2 2 0 1 1 0 0 0 0 0.15 0.90 -2927 ZNF420 zinc finger protein 420 1054053 2 2 2 0 0 0 0 0 2 0 0.15 0.90 -2928 LRRIQ3 964821 2 2 2 0 0 0 1 1 0 0 0.15 0.90 -2929 NEU2 sialidase 2 (cytosolic sialidase) 583050 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2930 CCDC39 coiled-coil domain containing 39 1282710 2 2 2 0 1 0 0 0 1 0 0.15 0.90 -2931 FAM46C family with sequence similarity 46, member C 598260 2 2 2 1 2 0 0 0 0 0 0.15 0.90 -2932 BAZ2A bromodomain adjacent to zinc finger domain, 2A 2957838 3 3 3 0 0 0 0 1 2 0 0.15 0.90 -2933 DMRT3 doublesex and mab-3 related transcription factor 3 491283 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2934 CREB3L2 cAMP responsive element binding protein 3-like 2 694083 2 2 2 0 1 0 1 0 0 0 0.15 0.90 -2935 STAC SH3 and cysteine rich domain 598260 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2936 GATSL3 319917 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2937 KREMEN1 kringle containing transmembrane protein 1 691041 2 2 2 0 0 1 1 0 0 0 0.15 0.90 -2938 AQP5 aquaporin 5 284427 1 1 1 0 0 0 0 1 0 0 0.15 0.90 -2939 LY6G5B lymphocyte antigen 6 complex, locus G5B 313326 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2940 CCNK cyclin K 509535 1 1 1 0 0 0 1 0 0 0 0.15 0.90 -2941 BAG4 BCL2-associated athanogene 4 567840 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2942 TSHR thyroid stimulating hormone receptor 1253304 3 3 3 1 0 3 0 0 0 0 0.15 0.90 -2943 ZNF572 zinc finger protein 572 810186 2 2 2 0 0 1 1 0 0 0 0.15 0.90 -2944 FZD3 frizzled homolog 3 (Drosophila) 1026675 2 2 2 0 1 0 1 0 0 0 0.15 0.90 -2945 ACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase) 562770 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2946 SLC25A25 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 848211 2 2 2 0 0 1 0 0 1 0 0.15 0.90 -2947 NOP16 282399 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2948 SORBS1 sorbin and SH3 domain containing 1 2061969 4 4 4 1 2 1 0 0 1 0 0.15 0.90 -2949 C7orf61 320931 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2950 SCD stearoyl-CoA desaturase (delta-9-desaturase) 559728 1 1 1 0 0 0 0 1 0 0 0.15 0.90 -2951 TPST1 tyrosylprotein sulfotransferase 1 572403 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2952 CDH24 cadherin-like 24 985101 2 2 2 0 0 0 2 0 0 0 0.15 0.90 -2953 FAM180A 270738 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2954 PLCD3 phospholipase C, delta 3 648960 2 2 2 1 0 2 0 0 0 0 0.15 0.90 -2955 HOMER1 homer homolog 1 (Drosophila) 558207 1 1 1 0 0 0 1 0 0 0 0.15 0.90 -2956 NOD1 nucleotide-binding oligomerization domain containing 1 1415544 3 3 3 0 0 2 0 1 0 0 0.15 0.90 -2957 BZRAP1 benzodiazapine receptor (peripheral) associated protein 1 2260206 4 4 4 4 1 0 3 0 0 0 0.15 0.90 -2958 KCNH1 potassium voltage-gated channel, subfamily H (eag-related), member 1 1528098 3 3 3 1 0 3 0 0 0 0 0.15 0.90 -2959 ADPRH ADP-ribosylarginine hydrolase 550602 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2960 MYCT1 myc target 1 363012 1 1 1 0 1 0 0 0 0 0 0.15 0.90 -2961 UBA6 ubiquitin-like modifier activating enzyme 6 1592994 3 3 3 0 1 0 1 0 1 0 0.15 0.90 -2962 AFF3 AF4/FMR2 family, member 3 1762839 4 4 4 2 0 3 1 0 0 0 0.15 0.90 -2963 CRIPAK cysteine-rich PAK1 inhibitor 315354 1 1 1 1 0 1 0 0 0 0 0.15 0.90 -2964 SNCB synuclein, beta 152100 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2965 SRF serum response factor (c-fos serum response element-binding transcription factor) 526266 1 1 1 0 0 0 1 0 0 0 0.15 0.90 -2966 HS2ST1 heparan sulfate 2-O-sulfotransferase 1 559221 1 1 1 0 0 0 1 0 0 0 0.15 0.90 -2967 ZIC5 Zic family member 5 (odd-paired homolog, Drosophila) 339183 1 1 1 0 0 1 0 0 0 0 0.15 0.90 -2968 C6orf154 chromosome 6 open reading frame 154 267189 1 1 1 1 0 1 0 0 0 0 0.15 0.90 -2969 TMC4 transmembrane channel-like 4 874575 2 2 2 0 2 0 0 0 0 0 0.15 0.90 -2970 PRPSAP2 phosphoribosyl pyrophosphate synthetase-associated protein 2 583050 1 1 1 1 0 0 0 0 1 0 0.15 0.90 -2971 DAB2 disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) 1199055 3 3 3 0 1 1 1 0 0 0 0.15 0.90 -2972 CSTF3 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 1181817 3 3 3 0 0 2 1 0 0 0 0.15 0.90 -2973 USH1G Usher syndrome 1G (autosomal recessive) 531843 1 1 1 0 0 0 1 0 0 0 0.15 0.90 -2974 CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1 581529 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2975 PSG9 pregnancy specific beta-1-glycoprotein 9 661635 2 2 2 0 0 0 2 0 0 0 0.15 0.90 -2976 DNAJB5 DnaJ (Hsp40) homolog, subfamily B, member 5 554151 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2977 SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa 872547 2 2 1 0 0 0 2 0 0 0 0.15 0.90 -2978 COL8A1 collagen, type VIII, alpha 1 949611 2 2 2 1 0 2 0 0 0 0 0.15 0.90 -2979 ZFYVE27 zinc finger, FYVE domain containing 27 585585 1 1 1 0 0 0 0 0 1 0 0.15 0.90 -2980 TOPBP1 topoisomerase (DNA) II binding protein 1 2371239 4 4 4 1 2 0 0 2 0 0 0.15 0.90 -2981 PADI2 peptidyl arginine deiminase, type II 930345 2 2 2 0 1 0 0 0 1 0 0.16 0.90 -2982 FCRLB Fc receptor-like B 544518 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -2983 KLC2 kinesin light chain 2 943527 2 2 2 0 0 1 0 0 1 0 0.16 0.90 -2984 PADI4 peptidyl arginine deiminase, type IV 1010958 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -2985 RNLS 574431 1 1 1 1 0 0 0 0 1 0 0.16 0.90 -2986 PSMD8 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 296088 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -2987 FAM86A family with sequence similarity 86, member A 468975 1 1 1 1 0 0 0 1 0 0 0.16 0.90 -2988 KRT82 keratin 82 800046 2 2 2 1 0 1 0 0 1 0 0.16 0.90 -2989 ITIH5L inter-alpha (globulin) inhibitor H5-like 1999608 4 4 4 1 2 0 0 1 1 0 0.16 0.90 -2990 MUSK muscle, skeletal, receptor tyrosine kinase 1302990 3 3 3 0 3 0 0 0 0 0 0.16 0.90 -2991 TNFSF18 tumor necrosis factor (ligand) superfamily, member 18 310284 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -2992 AGXT alanine-glyoxylate aminotransferase 319410 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -2993 KLHDC4 kelch domain containing 4 612963 2 2 2 0 2 0 0 0 0 0 0.16 0.90 -2994 PRKACA protein kinase, cAMP-dependent, catalytic, alpha 543504 1 1 1 1 0 0 0 1 0 0 0.16 0.90 -2995 POLB polymerase (DNA directed), beta 539448 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -2996 SHC4 SHC (Src homology 2 domain containing) family, member 4 984087 2 2 2 0 0 1 0 0 1 0 0.16 0.90 -2997 OR1K1 olfactory receptor, family 1, subfamily K, member 1 484185 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -2998 CARD14 caspase recruitment domain family, member 14 1008930 2 2 2 2 0 0 0 1 1 0 0.16 0.90 -2999 TOB1 transducer of ERBB2, 1 528294 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3000 C4orf22 chromosome 4 open reading frame 22 368082 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3001 AGAP3 1164579 3 3 3 0 2 1 0 0 0 0 0.16 0.90 -3002 SYT5 synaptotagmin V 454272 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3003 MTMR11 myotubularin related protein 11 1098669 2 2 2 0 0 1 0 1 0 0 0.16 0.90 -3004 PRSS23 protease, serine, 23 586092 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3005 FRS3 fibroblast growth factor receptor substrate 3 682422 2 2 2 0 0 2 0 0 0 0 0.16 0.90 -3006 MCM7 minichromosome maintenance complex component 7 1125540 2 2 2 0 0 1 0 0 1 0 0.16 0.90 -3007 DHRS4 dehydrogenase/reductase (SDR family) member 4 365547 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3008 MEP1A meprin A, alpha (PABA peptide hydrolase) 1163565 3 3 3 0 2 0 1 0 0 0 0.16 0.90 -3009 LGI4 leucine-rich repeat LGI family, member 4 209391 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3010 TPM2 tropomyosin 2 (beta) 518661 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3011 MRPS9 mitochondrial ribosomal protein S9 624117 2 2 2 0 1 0 0 0 1 0 0.16 0.90 -3012 GIPC2 GIPC PDZ domain containing family, member 2 369096 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3013 OSMR oncostatin M receptor 1544322 3 3 3 1 0 1 1 1 0 0 0.16 0.90 -3014 RORC RAR-related orphan receptor C 817284 2 2 2 1 0 2 0 0 0 0 0.16 0.90 -3015 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 555672 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3016 SFTA3 152607 1 1 1 1 1 0 0 0 0 0 0.16 0.90 -3017 DAND5 DAN domain family, member 5 293046 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3018 RBBP9 retinoblastoma binding protein 9 292539 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3019 CRKL v-crk sarcoma virus CT10 oncogene homolog (avian)-like 468468 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3020 SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 557700 1 1 1 1 0 0 0 0 1 0 0.16 0.90 -3021 SSX5 synovial sarcoma, X breakpoint 5 364026 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3022 CYTH1 591669 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3023 ARMC8 armadillo repeat containing 8 1081938 2 2 2 0 0 0 1 0 1 0 0.16 0.90 -3024 COL2A1 collagen, type II, alpha 1 2085291 3 3 3 0 1 0 0 0 2 0 0.16 0.90 -3025 LGALS8 lectin, galactoside-binding, soluble, 8 (galectin 8) 567840 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3026 WIF1 WNT inhibitory factor 1 521196 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3027 CLDN15 claudin 15 335127 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3028 DLX6 distal-less homeobox 6 230178 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3029 ELMO2 engulfment and cell motility 2 1137201 2 2 2 0 0 0 0 0 2 0 0.16 0.90 -3030 NTM 591162 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3031 CBS cystathionine-beta-synthase 475059 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3032 TTC35 tetratricopeptide repeat domain 35 475059 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3033 ZNF22 zinc finger protein 22 (KOX 15) 344253 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3034 DEFB112 defensin, beta 112 177450 1 1 1 1 1 0 0 0 0 0 0.16 0.90 -3035 CLDN19 claudin 19 163254 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3036 NKAIN2 Na+/K+ transporting ATPase interacting 2 332085 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3037 FAM46A family with sequence similarity 46, member A 590148 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3038 OR5L1 olfactory receptor, family 5, subfamily L, member 1 476580 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3039 SLCO1A2 solute carrier organic anion transporter family, member 1A2 1048983 2 2 2 1 0 0 0 1 1 0 0.16 0.90 -3040 LPP LIM domain containing preferred translocation partner in lipoma 950625 2 2 2 0 0 0 2 0 0 0 0.16 0.90 -3041 SMTNL1 smoothelin-like 1 715377 2 2 2 0 0 2 0 0 0 0 0.16 0.90 -3042 SUFU suppressor of fused homolog (Drosophila) 720447 2 2 2 0 0 2 0 0 0 0 0.16 0.90 -3043 GLIPR1 GLI pathogenesis-related 1 (glioma) 418275 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3044 GAB3 GRB2-associated binding protein 3 876096 2 2 2 1 1 1 0 0 0 0 0.16 0.90 -3045 PANX1 pannexin 1 617019 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3046 ELFN2 extracellular leucine-rich repeat and fibronectin type III domain containing 2 460863 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3047 NAT8 N-acetyltransferase 8 348816 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3048 CDH4 cadherin 4, type 1, R-cadherin (retinal) 1080924 2 2 2 2 0 1 0 1 0 0 0.16 0.90 -3049 SLC17A3 solute carrier family 17 (sodium phosphate), member 3 781287 2 2 2 0 0 1 1 0 0 0 0.16 0.90 -3050 CD5 CD5 molecule 722475 2 2 2 0 0 1 0 0 1 0 0.16 0.90 -3051 TMX4 456807 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3052 ROBO4 roundabout homolog 4, magic roundabout (Drosophila) 1540266 3 3 3 0 0 2 0 1 0 0 0.16 0.90 -3053 SLC30A9 solute carrier family 30 (zinc transporter), member 9 844662 2 2 2 0 0 1 1 0 0 0 0.16 0.90 -3054 SLC11A1 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 835029 2 2 2 0 2 0 0 0 0 0 0.16 0.90 -3055 C13orf34 chromosome 13 open reading frame 34 874068 2 2 2 0 0 1 1 0 0 0 0.16 0.90 -3056 DAP3 death associated protein 3 631215 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -3057 POLR2H polymerase (RNA) II (DNA directed) polypeptide H 239811 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3058 CLDN17 claudin 17 344253 1 1 1 1 1 0 0 0 0 0 0.16 0.90 -3059 E2F3 E2F transcription factor 3 597246 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3060 ARMCX5 armadillo repeat containing, X-linked 5 852267 2 2 2 1 2 0 0 0 0 0 0.16 0.90 -3061 VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 420810 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3062 HDAC8 histone deacetylase 8 640848 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -3063 EZR ezrin 919191 2 2 2 0 0 1 0 0 1 0 0.16 0.90 -3064 BTN1A1 butyrophilin, subfamily 1, member A1 815763 2 2 2 0 0 0 2 0 0 0 0.16 0.90 -3065 MUTYH mutY homolog (E. coli) 856830 2 2 2 0 0 1 1 0 0 0 0.16 0.90 -3066 CNPY3 canopy 3 homolog (zebrafish) 357942 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3067 UBE2R2 ubiquitin-conjugating enzyme E2R 2 281892 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3068 EMID2 EMI domain containing 2 390390 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3069 C11orf45 chromosome 11 open reading frame 45 224601 1 1 1 1 0 0 0 0 1 0 0.16 0.90 -3070 RNFT2 ring finger protein, transmembrane 2 442611 1 1 1 1 0 1 0 0 0 0 0.16 0.90 -3071 ZNF75D 787371 2 2 2 2 0 0 2 0 0 0 0.16 0.90 -3072 ECM2 extracellular matrix protein 2, female organ and adipocyte specific 1082952 2 2 2 0 0 1 0 0 1 0 0.16 0.90 -3073 BRAF v-raf murine sarcoma viral oncogene homolog B1 1131117 2 2 2 0 0 0 1 0 1 0 0.16 0.90 -3074 LHX5 LIM homeobox 5 378729 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3075 PNMAL2 PNMA-like 2 835029 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -3076 PEX7 peroxisomal biogenesis factor 7 445146 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3077 PDZD2 PDZ domain containing 2 4368312 6 6 6 0 2 2 0 1 1 0 0.16 0.90 -3078 TTLL1 tubulin tyrosine ligase-like family, member 1 662649 2 2 2 0 0 0 1 1 0 0 0.16 0.90 -3079 RDBP RD RNA binding protein 599781 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3080 RANBP9 RAN binding protein 9 847197 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -3081 CTRL chymotrypsin-like 388869 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3082 FIGF c-fos induced growth factor (vascular endothelial growth factor D) 554151 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3083 CNTFR ciliary neurotrophic factor receptor 433485 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3084 OR1M1 olfactory receptor, family 1, subfamily M, member 1 479622 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3085 GSK3A glycogen synthase kinase 3 alpha 592683 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3086 RBAK RB-associated KRAB zinc finger 1095627 2 2 2 1 0 0 1 0 1 0 0.16 0.90 -3087 PPP3CB protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform 783315 2 2 2 0 0 2 0 0 0 0 0.16 0.90 -3088 RASSF5 Ras association (RalGDS/AF-6) domain family member 5 478608 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3089 ZNF586 zinc finger protein 586 598767 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3090 HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 1244178 2 2 2 0 0 0 1 0 1 0 0.16 0.90 -3091 UBR7 577473 1 1 1 1 0 0 0 0 1 0 0.16 0.90 -3092 ZNF208 zinc finger protein 208 1906827 4 4 4 2 0 1 3 0 0 0 0.16 0.90 -3093 PKD1L2 polycystic kidney disease 1-like 2 3065829 4 4 3 1 0 1 1 0 2 0 0.16 0.90 -3094 LOC286238 175929 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3095 OCRL oculocerebrorenal syndrome of Lowe 1398813 3 3 3 1 0 3 0 0 0 0 0.16 0.90 -3096 ITLN1 intelectin 1 (galactofuranose binding) 491790 1 1 1 2 0 1 0 0 0 0 0.16 0.90 -3097 HTATSF1 HIV-1 Tat specific factor 1 1168128 3 3 3 0 1 2 0 0 0 0 0.16 0.90 -3098 UNC5C unc-5 homolog C (C. elegans) 1333410 3 3 3 0 0 2 1 0 0 0 0.16 0.90 -3099 C7orf26 chromosome 7 open reading frame 26 492804 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3100 LIAS lipoic acid synthetase 553137 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3101 UBE3C ubiquitin protein ligase E3C 1659918 3 3 3 1 0 1 0 1 1 0 0.16 0.90 -3102 SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 1596543 3 3 3 0 0 2 0 0 1 0 0.16 0.90 -3103 SYT10 synaptotagmin X 811200 2 2 2 0 0 2 0 0 0 0 0.16 0.90 -3104 UGGT2 2304315 4 4 4 1 1 0 1 1 1 0 0.16 0.90 -3105 ACE angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 1628484 3 3 3 1 2 0 0 0 1 0 0.16 0.90 -3106 SPRED2 sprouty-related, EVH1 domain containing 2 634257 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3107 CORO2A coronin, actin binding protein, 2A 817791 2 2 2 0 0 1 1 0 0 0 0.16 0.90 -3108 DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 2393547 4 4 4 1 0 1 1 2 0 0 0.16 0.90 -3109 SLC35C2 solute carrier family 35, member C2 574938 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3110 EPN3 epsin 3 852267 2 2 2 0 1 0 0 0 1 0 0.16 0.90 -3111 EID3 EP300 interacting inhibitor of differentiation 3 486213 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3112 AKAP11 A kinase (PRKA) anchor protein 11 2915250 5 5 5 0 1 2 0 0 2 0 0.16 0.90 -3113 OR11H12 olfactory receptor, family 11, subfamily H, member 12 499395 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3114 IGFL2 IGF-like family member 2 178971 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3115 CENPL centromere protein L 532857 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3116 NFATC4 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 1419600 3 3 3 0 0 0 2 0 1 0 0.16 0.90 -3117 ACP6 acid phosphatase 6, lysophosphatidic 559728 1 1 1 0 0 0 1 0 0 0 0.16 0.90 -3118 PYGM phosphorylase, glycogen; muscle (McArdle syndrome, glycogen storage disease type V) 1133652 2 2 2 0 0 0 0 0 2 0 0.16 0.90 -3119 IL18RAP interleukin 18 receptor accessory protein 932880 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -3120 FGA fibrinogen alpha chain 1323777 3 3 3 0 0 2 0 1 0 0 0.16 0.90 -3121 SSX4 synovial sarcoma, X breakpoint 4 208377 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3122 CXCL17 chemokine (C-X-C motif) ligand 17 190632 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3123 ZFYVE16 zinc finger, FYVE domain containing 16 2376816 3 3 3 0 0 0 1 0 2 0 0.16 0.90 -3124 CLSTN2 calsyntenin 2 1431261 3 3 3 3 1 2 0 0 0 0 0.16 0.90 -3125 TIMD4 T-cell immunoglobulin and mucin domain containing 4 594711 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3126 LRRC2 leucine rich repeat containing 2 582036 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3127 A2M alpha-2-macroglobulin 2315469 3 3 3 1 0 1 1 0 1 0 0.16 0.90 -3128 GREM2 gremlin 2, cysteine knot superfamily, homolog (Xenopus laevis) 250965 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3129 CREBZF CREB/ATF bZIP transcription factor 439569 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3130 RIMS4 regulating synaptic membrane exocytosis 4 371631 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3131 VIP vasoactive intestinal peptide 270231 1 1 1 0 1 0 0 0 0 0 0.16 0.90 -3132 DPY19L2 dpy-19-like 2 (C. elegans) 1157481 2 2 2 0 0 0 0 0 2 0 0.16 0.90 -3133 HSPA2 heat shock 70kDa protein 2 837564 2 2 2 0 2 0 0 0 0 0 0.16 0.90 -3134 SLC35D1 solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 559728 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3135 RYR2 ryanodine receptor 2 (cardiac) 7421466 13 12 13 7 6 5 1 0 1 0 0.16 0.90 -3136 ASB17 ankyrin repeat and SOCS box-containing 17 456300 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3137 ERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1760811 4 3 4 0 1 0 2 1 0 0 0.16 0.90 -3138 GPR37 G protein-coupled receptor 37 (endothelin receptor type B-like) 794976 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -3139 FOXO4 forkhead box O4 775710 2 2 2 0 0 1 1 0 0 0 0.16 0.90 -3140 PGM5 phosphoglucomutase 5 751881 2 2 2 0 1 1 0 0 0 0 0.16 0.90 -3141 SYT2 synaptotagmin II 655044 2 2 2 0 0 0 1 1 0 0 0.16 0.90 -3142 OR4S2 olfactory receptor, family 4, subfamily S, member 2 476580 1 1 1 0 0 1 0 0 0 0 0.16 0.90 -3143 RAD17 RAD17 homolog (S. pombe) 1076361 2 2 2 0 0 1 1 0 0 0 0.16 0.90 -3144 ZSWIM2 zinc finger, SWIM-type containing 2 964314 2 2 2 0 1 0 1 0 0 0 0.16 0.90 -3145 PON1 paraoxonase 1 559728 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3146 ANKRD12 ankyrin repeat domain 12 3162159 5 5 5 0 1 0 1 1 2 0 0.16 0.90 -3147 CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) 609414 1 1 1 0 0 0 0 0 1 0 0.16 0.90 -3148 GLIS1 GLIS family zinc finger 1 319410 1 1 1 1 0 0 1 0 0 0 0.16 0.90 -3149 MRPL53 mitochondrial ribosomal protein L53 177957 1 1 1 0 0 0 0 1 0 0 0.16 0.90 -3150 EIF2C3 eukaryotic translation initiation factor 2C, 3 1336452 3 3 3 1 0 1 1 0 1 0 0.17 0.90 -3151 OR51V1 olfactory receptor, family 51, subfamily V, member 1 491790 1 1 1 0 0 0 1 0 0 0 0.17 0.90 -3152 INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa 1444950 3 3 3 0 1 1 1 0 0 0 0.17 0.90 -3153 CDK16 789399 2 2 2 0 0 1 1 0 0 0 0.17 0.90 -3154 C10orf12 chromosome 10 open reading frame 12 1900236 4 4 4 1 1 2 1 0 0 0 0.17 0.91 -3155 SALL1 sal-like 1 (Drosophila) 1980849 4 4 4 3 1 1 1 0 1 0 0.17 0.91 -3156 ATG16L1 ATG16 autophagy related 16-like 1 (S. cerevisiae) 900939 2 2 2 0 0 2 0 0 0 0 0.17 0.91 -3157 CALU calumenin 492804 1 1 1 0 0 0 0 1 0 0 0.17 0.91 -3158 UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 820833 2 2 2 0 0 1 1 0 0 0 0.17 0.91 -3159 CCDC111 coiled-coil domain containing 111 792948 2 2 2 0 0 0 0 1 1 0 0.17 0.91 -3160 SLC25A21 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 433992 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3161 C8orf86 346788 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3162 ICT1 immature colon carcinoma transcript 1 230685 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3163 VAC14 Vac14 homolog (S. cerevisiae) 895362 2 2 2 0 0 1 0 1 0 0 0.17 0.91 -3164 TSLP thymic stromal lymphopoietin 251472 1 1 1 1 0 1 0 0 0 0 0.17 0.91 -3165 OR52B2 olfactory receptor, family 52, subfamily B, member 2 494832 1 1 1 0 0 0 0 1 0 0 0.17 0.91 -3166 RDH16 retinol dehydrogenase 16 (all-trans) 491790 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3167 LRRC42 leucine rich repeat containing 42 666705 2 2 2 0 0 0 2 0 0 0 0.17 0.91 -3168 C2orf84 324987 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3169 ASPRV1 aspartic peptidase, retroviral-like 1 525252 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3170 STAMBPL1 STAM binding protein-like 1 684957 2 2 2 0 1 0 0 0 1 0 0.17 0.91 -3171 CSF1 colony stimulating factor 1 (macrophage) 838578 2 2 2 0 1 0 1 0 0 0 0.17 0.91 -3172 P4HTM 545025 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3173 RTN4IP1 reticulon 4 interacting protein 1 599781 1 1 1 1 0 0 0 0 1 0 0.17 0.91 -3174 C1orf66 chromosome 1 open reading frame 66 704223 2 2 2 0 0 0 1 1 0 0 0.17 0.91 -3175 ATPBD4 ATP binding domain 4 508521 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3176 ARG2 arginase, type II 509535 1 1 1 1 0 0 1 0 0 0 0.17 0.91 -3177 SEMA3B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B 618033 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3178 ZNF254 zinc finger protein 254 1011972 2 2 2 0 0 0 2 0 0 0 0.17 0.91 -3179 GJB4 gap junction protein, beta 4, 30.3kDa 408135 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3180 ABHD15 263640 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3181 IQCH IQ motif containing H 1606176 3 3 3 0 0 2 1 0 0 0 0.17 0.91 -3182 CPZ carboxypeptidase Z 669747 2 2 2 0 1 0 1 0 0 0 0.17 0.91 -3183 PTCRA pre T-cell antigen receptor alpha 304200 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3184 IFRD2 interferon-related developmental regulator 2 548067 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3185 NANS N-acetylneuraminic acid synthase (sialic acid synthase) 490776 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3186 KCNS2 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2 713349 2 2 2 0 1 0 0 0 1 0 0.17 0.91 -3187 THNSL1 threonine synthase-like 1 (S. cerevisiae) 1133652 2 2 2 0 0 1 0 0 1 0 0.17 0.91 -3188 NRP1 neuropilin 1 1406418 3 3 3 0 0 2 0 0 1 0 0.17 0.91 -3189 HMGB2 high-mobility group box 2 327522 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3190 IL2 interleukin 2 242346 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3191 CHD4 chromodomain helicase DNA binding protein 4 2981160 5 5 5 2 1 2 1 1 0 0 0.17 0.91 -3192 EFNA3 ephrin-A3 306735 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3193 IRAK4 interleukin-1 receptor-associated kinase 4 723489 2 2 2 0 0 1 1 0 0 0 0.17 0.91 -3194 KIAA0907 KIAA0907 896883 2 2 2 0 0 0 2 0 0 0 0.17 0.91 -3195 SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 645411 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3196 SFRS5 splicing factor, arginine/serine-rich 5 429429 1 1 1 1 0 1 0 0 0 0 0.17 0.91 -3197 AKD1 1659411 3 3 3 1 0 1 0 1 1 0 0.17 0.91 -3198 CD34 CD34 molecule 527787 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3199 C7orf65 237276 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3200 TTLL3 tubulin tyrosine ligase-like family, member 3 1173705 2 2 2 0 1 0 1 0 0 0 0.17 0.91 -3201 MUC16 mucin 16, cell surface associated 22213698 32 31 32 18 5 13 11 1 2 0 0.17 0.91 -3202 MIIP 546039 1 1 1 1 1 0 0 0 0 0 0.17 0.91 -3203 OLIG3 oligodendrocyte transcription factor 3 246402 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3204 CRNN cornulin 758472 2 2 2 0 1 1 0 0 0 0 0.17 0.91 -3205 SNAPC1 small nuclear RNA activating complex, polypeptide 1, 43kDa 581529 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3206 C15orf32 chromosome 15 open reading frame 32 278343 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3207 LPPR2 594711 1 1 1 2 0 0 0 0 1 0 0.17 0.91 -3208 ZNF585B zinc finger protein 585B 1179282 3 3 3 0 1 1 1 0 0 0 0.17 0.91 -3209 ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 285441 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3210 MTERF mitochondrial transcription termination factor 612456 1 1 1 0 0 0 0 1 0 0 0.17 0.91 -3211 LCE1C late cornified envelope 1C 183027 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3212 ZFP41 zinc finger protein 41 homolog (mouse) 303693 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3213 PPP1R3F protein phosphatase 1, regulatory (inhibitor) subunit 3F 660114 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3214 G3BP1 GTPase activating protein (SH3 domain) binding protein 1 732615 2 2 2 0 0 1 1 0 0 0 0.17 0.91 -3215 EHD2 EH-domain containing 2 790413 2 2 2 1 1 0 1 0 0 0 0.17 0.91 -3216 SH2D3A SH2 domain containing 3A 625131 1 1 1 1 0 1 0 0 0 0 0.17 0.91 -3217 CDCA2 cell division cycle associated 2 1585896 3 3 3 0 0 0 2 1 0 0 0.17 0.91 -3218 FCF1 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) 318903 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3219 SNX10 sorting nexin 10 319410 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3220 CYP2B6 cytochrome P450, family 2, subfamily B, polypeptide 6 766584 2 2 2 0 0 1 1 0 0 0 0.17 0.91 -3221 TBRG1 transforming growth factor beta regulator 1 338676 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3222 INHBA inhibin, beta A 653523 1 1 1 2 0 0 0 0 1 0 0.17 0.91 -3223 TNRC6B trinucleotide repeat containing 6B 2416869 3 3 3 0 0 2 0 0 1 0 0.17 0.91 -3224 RAD54L RAD54-like (S. cerevisiae) 1169142 2 2 2 0 0 1 1 0 0 0 0.17 0.91 -3225 HOXA13 homeobox A13 183534 1 1 1 0 0 0 0 1 0 0 0.17 0.91 -3226 EIF1AD eukaryotic translation initiation factor 1A domain containing 262626 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3227 TTC32 tetratricopeptide repeat domain 32 236769 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3228 C1orf54 chromosome 1 open reading frame 54 210912 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3229 NLRP10 NLR family, pyrin domain containing 10 1001832 2 2 2 1 0 2 0 0 0 0 0.17 0.91 -3230 PLAU plasminogen activator, urokinase 676845 2 2 2 1 1 0 1 0 0 0 0.17 0.91 -3231 ETS1 v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) 800046 2 2 2 1 1 1 0 0 0 0 0.17 0.91 -3232 C14orf50 chromosome 14 open reading frame 50 630708 2 2 2 0 0 1 1 0 0 0 0.17 0.91 -3233 MORN3 MORN repeat containing 3 293553 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3234 MUTED muted homolog (mouse) 237276 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3235 FCN1 ficolin (collagen/fibrinogen domain containing) 1 484692 1 1 1 1 0 1 0 0 0 0 0.17 0.91 -3236 PCDHA11 protocadherin alpha 11 1279161 3 3 3 0 3 0 0 0 0 0 0.17 0.91 -3237 MTERFD1 MTERF domain containing 1 649974 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3238 RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 235248 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3239 FASTKD1 FAST kinase domains 1 1318200 3 3 3 0 0 1 1 1 0 0 0.17 0.91 -3240 SSH3 slingshot homolog 3 (Drosophila) 887250 2 2 2 1 1 0 1 0 0 0 0.17 0.91 -3241 DNAL1 dynein, axonemal, light chain 1 278850 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3242 MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae) 326001 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3243 SERTAD3 SERTA domain containing 3 301665 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3244 THOC4 THO complex 4 249444 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3245 CLEC4E C-type lectin domain family 4, member E 346788 2 1 2 0 0 1 0 0 1 0 0.17 0.91 -3246 POU4F2 POU class 4 homeobox 2 432471 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3247 KIAA1210 2629302 5 5 5 0 4 0 1 0 0 0 0.17 0.91 -3248 DNAJA4 DnaJ (Hsp40) homolog, subfamily A, member 4 578487 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3249 PTK2B PTK2B protein tyrosine kinase 2 beta 1467258 3 3 3 0 2 0 1 0 0 0 0.17 0.91 -3250 HIST1H1E histone cluster 1, H1e 208377 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3251 DPPA2 developmental pluripotency associated 2 468975 1 1 1 1 0 1 0 0 0 0 0.17 0.91 -3252 IL11RA interleukin 11 receptor, alpha 669747 1 1 1 1 0 0 0 0 1 0 0.17 0.91 -3253 PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 972933 2 2 2 0 0 2 0 0 0 0 0.17 0.91 -3254 MAT2B methionine adenosyltransferase II, beta 507000 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3255 MRPS15 mitochondrial ribosomal protein S15 408642 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3256 WIPF3 WAS/WASL interacting protein family, member 3 345774 1 1 1 1 0 0 1 0 0 0 0.17 0.91 -3257 SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 515112 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3258 VBP1 von Hippel-Lindau binding protein 1 264147 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3259 KIAA1529 KIAA1529 2516241 5 5 4 0 0 2 2 1 0 0 0.17 0.91 -3260 CNGA4 cyclic nucleotide gated channel alpha 4 888264 2 2 2 0 1 1 0 0 0 0 0.17 0.91 -3261 STK19 serine/threonine kinase 19 559221 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3262 SSX4B synovial sarcoma, X breakpoint 4B 208377 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3263 EFS embryonal Fyn-associated substrate 786864 2 2 1 0 0 2 0 0 0 0 0.17 0.91 -3264 SERPINA6 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 625638 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3265 SPP2 secreted phosphoprotein 2, 24kDa 336648 1 1 1 0 1 0 0 0 0 0 0.17 0.91 -3266 CNN3 calponin 3, acidic 485199 1 1 1 0 0 0 0 1 0 0 0.17 0.91 -3267 GLT1D1 glycosyltransferase 1 domain containing 1 385827 1 1 1 2 0 1 0 0 0 0 0.17 0.91 -3268 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 309270 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3269 PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit 809679 2 2 2 0 1 0 0 0 1 0 0.17 0.91 -3270 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 629187 1 1 1 1 0 0 0 0 1 0 0.17 0.91 -3271 PHF20 PHD finger protein 20 1575249 2 2 2 0 1 0 0 0 1 0 0.17 0.91 -3272 CFH complement factor H 1927614 4 4 4 2 0 3 1 0 0 0 0.17 0.91 -3273 PCDHA13 protocadherin alpha 13 1440387 2 2 2 3 1 0 0 0 1 0 0.17 0.91 -3274 ECEL1 endothelin converting enzyme-like 1 748332 2 2 2 0 0 1 1 0 0 0 0.17 0.91 -3275 HOXD8 homeobox D8 308763 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3276 MSI1 musashi homolog 1 (Drosophila) 311805 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3277 ATP13A4 ATPase type 13A4 1881477 4 4 4 0 1 0 0 1 2 0 0.17 0.91 -3278 LZTS1 leucine zipper, putative tumor suppressor 1 843141 2 2 2 0 0 0 1 1 0 0 0.17 0.91 -3279 PFKP phosphofructokinase, platelet 810693 2 2 2 0 1 1 0 0 0 0 0.17 0.91 -3280 CD69 CD69 molecule 314340 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3281 KRTAP10-8 keratin associated protein 10-8 397488 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3282 ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 523224 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3283 SIGLEC12 sialic acid binding Ig-like lectin 12 959751 2 2 2 1 0 1 0 1 0 0 0.17 0.91 -3284 COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 707772 2 2 2 0 0 0 2 0 0 0 0.17 0.91 -3285 SEC31B SEC31 homolog B (S. cerevisiae) 1845480 5 3 5 0 2 1 0 2 0 0 0.17 0.91 -3286 IQCE IQ motif containing E 969891 2 2 2 0 0 2 0 0 0 0 0.17 0.91 -3287 ZFP42 zinc finger protein 42 homolog (mouse) 475059 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3288 PIM2 pim-2 oncogene 435513 1 1 1 1 0 1 0 0 0 0 0.17 0.91 -3289 ZMIZ1 zinc finger, MIZ-type containing 1 1667016 3 3 3 0 0 1 2 0 0 0 0.17 0.91 -3290 TRIP6 thyroid hormone receptor interactor 6 679887 1 1 1 0 0 0 0 0 1 0 0.17 0.91 -3291 ZNF300 zinc finger protein 300 942006 2 2 2 0 1 0 0 0 1 0 0.17 0.91 -3292 SLC38A7 solute carrier family 38, member 7 633243 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3293 CCT2 chaperonin containing TCP1, subunit 2 (beta) 844155 2 2 2 0 0 0 2 0 0 0 0.17 0.91 -3294 DAOA D-amino acid oxidase activator 284427 1 1 1 0 0 0 1 0 0 0 0.17 0.91 -3295 PCDH7 protocadherin 7 1191957 2 2 2 0 0 1 0 0 1 0 0.17 0.91 -3296 TRAPPC9 1538745 3 3 3 0 0 1 2 0 0 0 0.17 0.91 -3297 SLC2A14 solute carrier family 2 (facilitated glucose transporter), member 14 766584 2 2 2 0 1 1 0 0 0 0 0.17 0.91 -3298 FSTL5 follistatin-like 5 1320228 3 3 3 0 1 0 2 0 0 0 0.17 0.91 -3299 ZNF217 zinc finger protein 217 1603641 3 3 3 1 1 0 0 2 0 0 0.17 0.91 -3300 RGMB RGM domain family, member B 601302 1 1 1 1 0 0 0 0 1 0 0.17 0.91 -3301 MCCC1 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 1095627 2 2 2 0 1 0 0 0 1 0 0.17 0.91 -3302 ZC3H12C zinc finger CCCH-type containing 12C 1326819 3 3 3 0 1 1 0 1 0 0 0.17 0.91 -3303 RNASE8 ribonuclease, RNase A family, 8 237783 1 1 1 0 0 1 0 0 0 0 0.17 0.91 -3304 C12orf64 chromosome 12 open reading frame 64 3247842 7 6 7 0 3 0 2 1 1 0 0.17 0.91 -3305 ST6GALNAC1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 932373 2 2 2 1 0 1 0 1 0 0 0.17 0.91 -3306 FBXW4 F-box and WD repeat domain containing 4 512577 1 1 1 0 0 0 0 0 1 0 0.18 0.91 -3307 SNX1 sorting nexin 1 743262 2 2 2 0 0 1 1 0 0 0 0.18 0.91 -3308 GIT1 G protein-coupled receptor kinase interactor 1 591669 1 1 1 0 0 0 1 0 0 0 0.18 0.91 -3309 ITSN2 intersectin 2 2687607 5 5 5 0 1 2 1 0 1 0 0.18 0.91 -3310 GMFB glia maturation factor, beta 228150 1 1 1 0 0 0 0 0 1 0 0.18 0.91 -3311 TMEM106B transmembrane protein 106B 432471 1 1 1 0 0 0 1 0 0 0 0.18 0.91 -3312 RLN1 relaxin 1 286455 1 1 1 0 0 0 1 0 0 0 0.18 0.91 -3313 PAGE2 P antigen family, member 2 (prostate associated) 167817 1 1 1 1 0 1 0 0 0 0 0.18 0.92 -3314 GADL1 glutamate decarboxylase-like 1 542997 1 1 1 0 0 0 0 0 1 0 0.18 0.92 -3315 RAB21 RAB21, member RAS oncogene family 275301 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3316 VSTM2A V-set and transmembrane domain containing 2A 235248 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3317 CBX3 chromobox homolog 3 (HP1 gamma homolog, Drosophila) 290004 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3318 TTC22 tetratricopeptide repeat domain 22 353379 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3319 ANKAR ankyrin and armadillo repeat containing 2169960 4 4 4 0 0 0 3 0 1 0 0.18 0.92 -3320 PLIN3 610935 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3321 C17orf68 chromosome 17 open reading frame 68 1794780 3 3 3 1 0 0 2 0 1 0 0.18 0.92 -3322 GPR109B G protein-coupled receptor 109B 592176 1 1 1 0 0 0 0 1 0 0 0.18 0.92 -3323 NLRP12 NLR family, pyrin domain containing 12 1635582 3 3 3 2 0 2 0 0 1 0 0.18 0.92 -3324 SSR1 signal sequence receptor, alpha (translocon-associated protein alpha) 410670 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3325 LRG1 leucine-rich alpha-2-glycoprotein 1 533364 1 1 1 0 0 0 0 0 1 0 0.18 0.92 -3326 B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 570375 1 1 1 1 0 0 0 1 0 0 0.18 0.92 -3327 ZNF324 zinc finger protein 324 726531 2 2 2 3 0 1 1 0 0 0 0.18 0.92 -3328 PTPRE protein tyrosine phosphatase, receptor type, E 1095120 2 2 2 2 1 0 0 0 1 0 0.18 0.92 -3329 SPHK2 sphingosine kinase 2 744783 2 2 2 2 1 1 0 0 0 0 0.18 0.92 -3330 GRM3 glutamate receptor, metabotropic 3 1348620 3 3 3 2 1 0 2 0 0 0 0.18 0.92 -3331 C20orf186 chromosome 20 open reading frame 186 910065 2 2 2 0 0 2 0 0 0 0 0.18 0.92 -3332 GTF2IRD2 GTF2I repeat domain containing 2 1191957 2 2 2 0 0 0 1 0 1 0 0.18 0.92 -3333 DDX43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 1019577 2 2 2 0 1 0 0 0 1 0 0.18 0.92 -3334 PYHIN1 pyrin and HIN domain family, member 1 779766 2 2 2 0 1 1 0 0 0 0 0.18 0.92 -3335 NUDT6 nudix (nucleoside diphosphate linked moiety X)-type motif 6 369603 1 1 1 1 1 0 0 0 0 0 0.18 0.92 -3336 NCKAP1 NCK-associated protein 1 1734447 3 3 3 0 1 1 1 0 0 0 0.18 0.92 -3337 KIF5C kinesin family member 5C 1244685 3 3 3 1 0 1 1 1 0 0 0.18 0.92 -3338 CSRNP1 837564 2 2 2 1 2 0 0 0 0 0 0.18 0.92 -3339 CDX4 caudal type homeobox 4 438048 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3340 CPLX4 complexin 4 250965 1 1 1 0 0 0 0 1 0 0 0.18 0.92 -3341 TRAFD1 TRAF-type zinc finger domain containing 1 909051 2 2 2 0 0 1 1 0 0 0 0.18 0.92 -3342 FBXW9 F-box and WD repeat domain containing 9 584064 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3343 CCDC106 coiled-coil domain containing 106 284427 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3344 DLX1 distal-less homeobox 1 395460 1 1 1 0 1 0 0 0 0 0 0.18 0.92 -3345 HIST1H2BF histone cluster 1, H2bf 195195 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3346 CRYZL1 crystallin, zeta (quinone reductase)-like 1 556686 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3347 POU4F3 POU class 4 homeobox 3 519675 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3348 EFHA2 EF-hand domain family, member A2 614484 1 1 1 1 0 0 0 1 0 0 0.18 0.92 -3349 ALDH1L2 aldehyde dehydrogenase 1 family, member L2 1425684 3 3 3 1 0 1 1 0 1 0 0.18 0.92 -3350 GMPR2 guanosine monophosphate reductase 2 576459 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3351 RRAGB Ras-related GTP binding B 592683 1 1 1 0 0 0 0 0 1 0 0.18 0.92 -3352 SERINC2 serine incorporator 2 380757 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3353 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide 385827 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3354 OXER1 oxoeicosanoid (OXE) receptor 1 410670 1 1 1 1 0 1 0 0 0 0 0.18 0.92 -3355 FAM75A2 family with sequence similarity 75, member A2 1199055 2 2 2 0 0 0 0 1 1 0 0.18 0.92 -3356 CEP72 centrosomal protein 72kDa 756951 2 2 2 0 1 0 1 0 0 0 0.18 0.92 -3357 ATXN1 ataxin 1 1150383 2 2 2 1 0 1 1 0 0 0 0.18 0.92 -3358 SATL1 spermidine/spermine N1-acetyl transferase-like 1 726531 2 2 2 1 1 1 0 0 0 0 0.18 0.92 -3359 PRR23B 263640 1 1 1 0 1 0 0 0 0 0 0.18 0.92 -3360 AMPH amphiphysin 1020084 2 2 2 0 0 2 0 0 0 0 0.18 0.92 -3361 TNFRSF21 tumor necrosis factor receptor superfamily, member 21 885222 2 2 2 3 1 1 0 0 0 0 0.18 0.92 -3362 IDH3G isocitrate dehydrogenase 3 (NAD+) gamma 478101 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3363 HSPA4 heat shock 70kDa protein 4 1261416 3 3 3 0 0 1 2 0 0 0 0.18 0.92 -3364 SYMPK symplekin 1512381 3 3 3 2 0 2 0 0 1 0 0.18 0.92 -3365 IGSF22 immunoglobulin superfamily, member 22 1460160 3 3 3 1 1 1 1 0 0 0 0.18 0.92 -3366 VCL vinculin 1683747 3 3 3 1 1 0 0 0 2 0 0.18 0.92 -3367 MKRN1 makorin, ring finger protein, 1 657072 2 2 2 0 2 0 0 0 0 0 0.18 0.92 -3368 YIPF4 Yip1 domain family, member 4 342732 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3369 CCNC cyclin C 429936 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3370 IMPDH1 IMP (inosine monophosphate) dehydrogenase 1 751881 2 2 2 0 1 0 0 1 0 0 0.18 0.92 -3371 FOXK1 forkhead box K1 544011 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3372 ROD1 ROD1 regulator of differentiation 1 (S. pombe) 870012 2 2 2 1 1 0 0 1 0 0 0.18 0.92 -3373 AMY2A amylase, alpha 2A (pancreatic) 583557 1 1 1 0 1 0 0 0 0 0 0.18 0.92 -3374 SLC28A3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 1089036 2 2 2 1 0 1 0 1 0 0 0.18 0.92 -3375 RARG retinoic acid receptor, gamma 706758 2 2 2 0 1 1 0 0 0 0 0.18 0.92 -3376 CC2D1B coiled-coil and C2 domain containing 1B 1324791 3 3 3 0 0 3 0 0 0 0 0.18 0.92 -3377 SLC41A1 solute carrier family 41, member 1 802074 2 2 2 1 1 1 0 0 0 0 0.18 0.92 -3378 ADRA1B adrenergic, alpha-1B-, receptor 555165 1 1 1 0 0 0 0 0 1 0 0.18 0.92 -3379 SLC25A45 solute carrier family 25, member 45 451737 1 1 1 0 0 0 0 0 1 0 0.18 0.92 -3380 RGS20 regulator of G-protein signaling 20 458835 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3381 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 503451 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3382 RYR3 ryanodine receptor 3 7426029 11 11 11 9 1 5 4 0 1 0 0.18 0.92 -3383 OR10J1 olfactory receptor, family 10, subfamily J, member 1 490269 1 1 1 2 1 0 0 0 0 0 0.18 0.92 -3384 TMEM9 transmembrane protein 9 290004 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3385 TMEM90B 400023 1 1 1 0 1 0 0 0 0 0 0.18 0.92 -3386 ZNF804B zinc finger protein 804B 2061462 4 4 4 1 2 1 0 0 1 0 0.18 0.92 -3387 SH3BGRL SH3 domain binding glutamic acid-rich protein like 183027 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3388 TRIM48 tripartite motif-containing 48 328029 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3389 PBXIP1 pre-B-cell leukemia homeobox interacting protein 1 1122498 2 2 2 0 0 1 1 0 0 0 0.18 0.92 -3390 KRTAP10-2 keratin associated protein 10-2 391404 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3391 RAD18 RAD18 homolog (S. cerevisiae) 752895 2 2 2 0 0 2 0 0 0 0 0.18 0.92 -3392 OR4L1 olfactory receptor, family 4, subfamily L, member 1 478101 1 1 1 1 0 1 0 0 0 0 0.18 0.92 -3393 PSG3 pregnancy specific beta-1-glycoprotein 3 664677 2 2 2 1 0 2 0 0 0 0 0.18 0.92 -3394 ASPA aspartoacylase (Canavan disease) 489762 1 1 1 0 0 0 0 0 1 0 0.18 0.92 -3395 GLCE glucuronic acid epimerase 946062 2 2 2 0 0 0 1 0 1 0 0.18 0.92 -3396 C10orf81 chromosome 10 open reading frame 81 575952 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3397 ZNF454 zinc finger protein 454 803595 2 2 2 0 1 0 1 0 0 0 0.18 0.92 -3398 ALKBH8 alkB, alkylation repair homolog 8 (E. coli) 421317 1 1 1 0 0 0 0 0 1 0 0.18 0.92 -3399 P2RX6 purinergic receptor P2X, ligand-gated ion channel, 6 378729 1 1 1 0 0 0 0 1 0 0 0.18 0.92 -3400 ZNF200 zinc finger protein 200 434499 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3401 C14orf166B chromosome 14 open reading frame 166B 656565 2 2 2 0 1 0 1 0 0 0 0.18 0.92 -3402 CYSLTR2 cysteinyl leukotriene receptor 2 529815 1 1 1 1 0 1 0 0 0 0 0.18 0.92 -3403 ZNF192 zinc finger protein 192 890799 2 2 2 0 2 0 0 0 0 0 0.18 0.92 -3404 SCLT1 sodium channel and clathrin linker 1 1090557 2 2 2 0 0 2 0 0 0 0 0.18 0.92 -3405 RAPGEF1 Rap guanine nucleotide exchange factor (GEF) 1 1631526 3 3 3 0 1 0 1 0 1 0 0.18 0.92 -3406 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 415233 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3407 MRPS14 mitochondrial ribosomal protein S14 202293 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3408 TBP TATA box binding protein 531336 1 1 1 1 0 0 1 0 0 0 0.18 0.92 -3409 FANCF Fanconi anemia, complementation group F 562263 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3410 IFNA10 interferon, alpha 10 291018 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3411 FAM116A family with sequence similarity 116, member A 844662 2 2 2 0 0 0 2 0 0 0 0.18 0.92 -3412 GLCCI1 glucocorticoid induced transcript 1 616005 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3413 C1orf186 chromosome 1 open reading frame 186 273273 1 1 1 0 0 0 0 1 0 0 0.18 0.92 -3414 ITGB1BP3 integrin beta 1 binding protein 3 210912 1 1 1 0 1 0 0 0 0 0 0.18 0.92 -3415 KIAA1586 KIAA1586 1066728 2 2 2 0 0 0 2 0 0 0 0.18 0.92 -3416 PAG1 phosphoprotein associated with glycosphingolipid microdomains 1 670761 2 2 2 0 1 0 1 0 0 0 0.18 0.92 -3417 HSPA9 heat shock 70kDa protein 9 (mortalin) 1025661 2 2 2 0 0 0 1 0 1 0 0.18 0.92 -3418 CPNE4 copine IV 879138 2 2 2 0 0 1 0 0 1 0 0.18 0.92 -3419 C7 complement component 7 1320228 3 3 3 0 1 1 0 1 0 0 0.18 0.92 -3420 VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 1532154 3 3 3 0 0 0 3 0 0 0 0.18 0.92 -3421 CDC42BPB CDC42 binding protein kinase beta (DMPK-like) 1873365 4 4 4 1 1 1 1 0 1 0 0.18 0.92 -3422 VDAC2 voltage-dependent anion channel 2 449202 1 1 1 0 0 1 0 0 0 0 0.18 0.92 -3423 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 485199 1 1 1 0 0 0 0 1 0 0 0.18 0.92 -3424 HCN4 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 960765 2 2 2 2 0 2 0 0 0 0 0.18 0.92 -3425 VSX1 visual system homeobox 1 303186 1 1 1 0 0 0 0 1 0 0 0.18 0.92 -3426 C1orf103 chromosome 1 open reading frame 103 1145820 2 2 2 0 0 0 1 0 1 0 0.18 0.92 -3427 FAM122B family with sequence similarity 122B 396981 1 1 1 0 1 0 0 0 0 0 0.18 0.92 -3428 KIF2A kinesin heavy chain member 2A 1138215 2 2 2 0 0 1 1 0 0 0 0.18 0.92 -3429 RRAGD Ras-related GTP binding D 547053 1 1 1 0 0 0 1 0 0 0 0.18 0.92 -3430 ZFP37 zinc finger protein 37 homolog (mouse) 967863 2 2 2 0 0 0 1 1 0 0 0.18 0.92 -3431 AHRR aryl-hydrocarbon receptor repressor 627666 1 1 1 1 0 0 0 1 0 0 0.18 0.93 -3432 USE1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) 330057 1 1 1 1 0 1 0 0 0 0 0.18 0.93 -3433 MAPK3 mitogen-activated protein kinase 3 534885 1 1 1 0 0 1 0 0 0 0 0.18 0.93 -3434 SLC47A2 solute carrier family 47, member 2 623610 1 1 1 0 0 1 0 0 0 0 0.18 0.93 -3435 PRICKLE3 prickle homolog 3 (Drosophila) 853281 2 2 2 0 1 1 0 0 0 0 0.18 0.93 -3436 NELL1 NEL-like 1 (chicken) 1274091 3 3 3 1 1 1 1 0 0 0 0.18 0.93 -3437 PRDM14 PR domain containing 14 692055 1 1 1 2 0 0 0 0 1 0 0.18 0.93 -3438 H6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 1178775 2 2 2 0 0 0 0 1 1 0 0.18 0.93 -3439 CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 765063 2 2 2 0 0 1 1 0 0 0 0.18 0.93 -3440 NBPF14 neuroblastoma breakpoint family, member 14 1183338 2 2 2 0 0 1 0 0 1 0 0.18 0.93 -3441 ERBB2IP erbb2 interacting protein 2133456 4 4 4 1 2 1 0 0 1 0 0.18 0.93 -3442 TXNDC12 thioredoxin domain containing 12 (endoplasmic reticulum) 273273 1 1 1 0 0 1 0 0 0 0 0.18 0.93 -3443 CARD10 caspase recruitment domain family, member 10 710814 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3444 BHLHE41 225108 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3445 SETD7 SET domain containing (lysine methyltransferase) 7 552123 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3446 PSMA5 proteasome (prosome, macropain) subunit, alpha type, 5 386334 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3447 LARP4B 1140243 2 2 2 0 0 1 0 0 1 0 0.19 0.93 -3448 SRPX2 sushi-repeat-containing protein, X-linked 2 697632 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3449 FAM83G family with sequence similarity 83, member G 662142 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3450 TMUB2 transmembrane and ubiquitin-like domain containing 2 476073 1 1 1 0 0 0 0 1 0 0 0.19 0.93 -3451 HPS3 Hermansky-Pudlak syndrome 3 1451034 3 3 3 0 0 0 3 0 0 0 0.19 0.93 -3452 HMBOX1 homeobox containing 1 644904 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3453 LGI1 leucine-rich, glioma inactivated 1 864942 2 2 2 0 1 0 1 0 0 0 0.19 0.93 -3454 CCDC105 coiled-coil domain containing 105 404079 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3455 FUZ fuzzy homolog (Drosophila) 223587 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3456 RPL26 ribosomal protein L26 228150 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3457 WDR76 WD repeat domain 76 980031 2 2 2 1 1 0 0 1 0 0 0.19 0.93 -3458 EML3 echinoderm microtubule associated protein like 3 1161030 2 2 2 0 1 0 0 0 1 0 0.19 0.93 -3459 SFRS12IP1 SFRS12-interacting protein 1 247416 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3460 DKKL1 dickkopf-like 1 (soggy) 379743 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3461 SLC3A2 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 714363 2 2 2 0 0 1 1 0 0 0 0.19 0.93 -3462 NHLH1 nescient helix loop helix 1 200265 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3463 ADK adenosine kinase 539448 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3464 KCTD14 potassium channel tetramerisation domain containing 14 393432 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3465 CLDN6 claudin 6 272259 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3466 DDR2 discoidin domain receptor tyrosine kinase 2 1334424 3 3 3 1 1 2 0 0 0 0 0.19 0.93 -3467 ICA1 islet cell autoantigen 1, 69kDa 762528 2 2 2 1 1 0 0 0 1 0 0.19 0.93 -3468 CABP5 calcium binding protein 5 242853 1 1 1 1 1 0 0 0 0 0 0.19 0.93 -3469 TMPRSS11B transmembrane protease, serine 11B 654537 1 1 1 1 0 0 0 0 1 0 0.19 0.93 -3470 NT5C3 5'-nucleotidase, cytosolic III 445653 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3471 SNAI1 snail homolog 1 (Drosophila) 409149 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3472 LBP lipopolysaccharide binding protein 616512 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3473 BIN1 bridging integrator 1 632229 1 1 1 1 0 0 0 0 1 0 0.19 0.93 -3474 FHL5 four and a half LIM domains 5 443625 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3475 CD248 CD248 molecule, endosialin 594711 1 1 1 1 0 0 0 0 1 0 0.19 0.93 -3476 ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 590148 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3477 GMEB1 glucocorticoid modulatory element binding protein 1 891306 2 2 2 0 0 2 0 0 0 0 0.19 0.93 -3478 APOH apolipoprotein H (beta-2-glycoprotein I) 542490 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3479 IGSF3 immunoglobulin superfamily, member 3 1870323 3 3 3 1 1 0 0 0 2 0 0.19 0.93 -3480 NLGN3 neuroligin 3 1265979 3 3 3 1 1 1 1 0 0 0 0.19 0.93 -3481 CTTNBP2NL CTTNBP2 N-terminal like 981552 2 2 2 0 1 0 0 0 1 0 0.19 0.93 -3482 CTNNBL1 catenin, beta like 1 823368 2 2 2 1 2 0 0 0 0 0 0.19 0.93 -3483 PTPN14 protein tyrosine phosphatase, non-receptor type 14 1842945 3 3 3 1 0 1 1 0 1 0 0.19 0.93 -3484 ANKRD7 ankyrin repeat domain 7 400023 1 1 1 0 0 0 0 1 0 0 0.19 0.93 -3485 GSTZ1 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 315861 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3486 HEATR7B2 2465034 4 4 4 4 2 1 1 0 0 0 0.19 0.93 -3487 SPIN2B spindlin family, member 2B 353886 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3488 COPS8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) 294060 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3489 MMP17 matrix metallopeptidase 17 (membrane-inserted) 378729 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3490 NDUFA10 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa 521703 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3491 PRKCQ protein kinase C, theta 1109823 2 2 2 0 1 0 0 1 0 0 0.19 0.93 -3492 CADM1 cell adhesion molecule 1 629187 1 1 1 0 0 0 0 0 1 0 0.19 0.93 -3493 KCTD9 potassium channel tetramerisation domain containing 9 591162 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3494 CABIN1 2953782 5 5 5 2 1 1 1 0 2 0 0.19 0.93 -3495 C15orf2 chromosome 15 open reading frame 2 1756755 2 2 2 0 0 0 1 0 1 0 0.19 0.93 -3496 C13orf26 chromosome 13 open reading frame 26 422838 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3497 F11R F11 receptor 476580 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3498 ACTBL2 actin, beta-like 2 575445 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3499 CDC20B cell division cycle 20 homolog B (S. cerevisiae) 803595 2 2 2 0 0 1 0 1 0 0 0.19 0.93 -3500 BSND Bartter syndrome, infantile, with sensorineural deafness (Barttin) 495339 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3501 CACNA1G calcium channel, voltage-dependent, T type, alpha 1G subunit 2809794 5 5 5 5 2 1 1 0 1 0 0.19 0.93 -3502 ZNF101 zinc finger protein 101 669240 2 2 2 0 1 1 0 0 0 0 0.19 0.93 -3503 FAM177B 249951 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3504 DRAM1 309270 1 1 1 1 0 0 1 0 0 0 0.19 0.93 -3505 AVPR1B arginine vasopressin receptor 1B 544518 1 1 1 1 0 1 0 0 0 0 0.19 0.93 -3506 OR6V1 olfactory receptor, family 6, subfamily V, member 1 479622 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3507 CALCA calcitonin-related polypeptide alpha 305214 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3508 CLC Charcot-Leyden crystal protein 225615 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3509 FDFT1 farnesyl-diphosphate farnesyltransferase 1 595218 1 1 1 0 1 0 0 0 0 0 0.19 0.93 -3510 CD93 CD93 molecule 770640 2 2 2 0 1 1 0 0 0 0 0.19 0.93 -3511 PCDHGB7 protocadherin gamma subfamily B, 7 1375998 3 3 3 1 1 0 1 1 0 0 0.19 0.93 -3512 CDK5 cyclin-dependent kinase 5 431457 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3513 ZNF556 zinc finger protein 556 686478 2 2 2 0 1 1 0 0 0 0 0.19 0.93 -3514 AMDHD1 amidohydrolase domain containing 1 596232 1 1 1 0 0 0 1 0 0 0 0.19 0.93 -3515 MGMT O-6-methylguanine-DNA methyltransferase 222066 1 1 1 1 1 0 0 0 0 0 0.19 0.93 -3516 POLR3C polymerase (RNA) III (DNA directed) polypeptide C (62kD) 842127 2 2 2 0 0 2 0 0 0 0 0.19 0.93 -3517 P2RY11 purinergic receptor P2Y, G-protein coupled, 11 574431 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3518 HELT 284427 1 1 1 0 0 1 0 0 0 0 0.19 0.93 -3519 PTGFRN prostaglandin F2 receptor negative regulator 1215786 2 2 2 0 1 0 1 0 0 0 0.19 0.93 -3520 ARHGEF3 Rho guanine nucleotide exchange factor (GEF) 3 771147 2 2 2 0 0 2 0 0 0 0 0.19 0.93 -3521 QARS glutaminyl-tRNA synthetase 1202097 2 2 2 0 0 0 1 1 0 0 0.19 0.93 -3522 LARP1 La ribonucleoprotein domain family, member 1 1589952 3 3 3 0 1 1 0 0 1 0 0.19 0.94 -3523 SMO smoothened homolog (Drosophila) 897390 2 2 2 1 1 1 0 0 0 0 0.19 0.94 -3524 SH3BP2 SH3-domain binding protein 2 499902 1 1 1 2 0 1 0 0 0 0 0.19 0.94 -3525 MAGEA11 melanoma antigen family A, 11 668733 1 1 1 0 0 0 0 0 1 0 0.19 0.94 -3526 MRPL48 mitochondrial ribosomal protein L48 252486 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3527 CRNKL1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) 1184859 2 2 2 0 0 1 1 0 0 0 0.19 0.94 -3528 PHACTR4 phosphatase and actin regulator 4 1120977 2 2 2 0 0 1 1 0 0 0 0.19 0.94 -3529 C1orf114 chromosome 1 open reading frame 114 784329 2 2 2 0 0 2 0 0 0 0 0.19 0.94 -3530 TTLL13 tubulin tyrosine ligase-like family, member 13 717912 2 2 2 0 1 0 1 0 0 0 0.19 0.94 -3531 COL25A1 collagen, type XXV, alpha 1 1111851 2 2 2 0 0 0 1 0 1 0 0.19 0.94 -3532 FOLH1 folate hydrolase (prostate-specific membrane antigen) 1 1118442 2 2 2 2 0 0 1 1 0 0 0.19 0.94 -3533 CCNL1 cyclin L1 668226 1 1 1 0 0 0 0 0 1 0 0.19 0.94 -3534 ODZ1 odz, odd Oz/ten-m homolog 1(Drosophila) 4209114 7 7 7 5 3 1 0 2 1 0 0.19 0.94 -3535 PES1 pescadillo homolog 1, containing BRCT domain (zebrafish) 691548 2 2 2 0 2 0 0 0 0 0 0.19 0.94 -3536 NR2C2AP nuclear receptor 2C2-associated protein 223080 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3537 RSPO2 R-spondin 2 homolog (Xenopus laevis) 381264 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3538 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) 696618 2 2 2 0 0 1 0 1 0 0 0.19 0.94 -3539 SARDH sarcosine dehydrogenase 886236 2 2 2 5 0 2 0 0 0 0 0.19 0.94 -3540 LCMT2 leucine carboxyl methyltransferase 2 806637 3 2 3 0 1 0 1 0 1 0 0.19 0.94 -3541 SCARA3 scavenger receptor class A, member 3 815763 2 2 2 1 0 2 0 0 0 0 0.19 0.94 -3542 GIMAP4 GTPase, IMAP family member 4 505986 1 1 1 0 1 0 0 0 0 0 0.19 0.94 -3543 TULP3 tubby like protein 3 673296 1 1 1 0 0 0 0 1 0 0 0.19 0.94 -3544 CNP 2',3'-cyclic nucleotide 3' phosphodiesterase 646425 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3545 AADACL4 arylacetamide deacetylase-like 4 628680 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3546 TRIM14 tripartite motif-containing 14 376701 1 1 1 0 1 0 0 0 0 0 0.19 0.94 -3547 C9orf78 chromosome 9 open reading frame 78 452244 1 1 1 0 0 0 0 0 1 0 0.19 0.94 -3548 USP29 ubiquitin specific peptidase 29 1405911 3 3 3 0 0 2 1 0 0 0 0.19 0.94 -3549 ITGA6 integrin, alpha 6 1702506 3 3 3 0 2 0 0 0 1 0 0.19 0.94 -3550 PRPF4B PRP4 pre-mRNA processing factor 4 homolog B (yeast) 1540773 3 3 3 0 1 0 1 1 0 0 0.19 0.94 -3551 EPM2AIP1 EPM2A (laforin) interacting protein 1 926289 3 2 3 0 0 1 1 0 1 0 0.19 0.94 -3552 TTL tubulin tyrosine ligase 507507 1 1 1 0 0 0 1 0 0 0 0.19 0.94 -3553 UBE2Q2 ubiquitin-conjugating enzyme E2Q (putative) 2 504972 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3554 DNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 3 752388 2 2 2 0 0 1 1 0 0 0 0.19 0.94 -3555 FAM48B1 family with sequence similarity 48, member B1 1188408 2 2 2 0 0 0 2 0 0 0 0.19 0.94 -3556 PCSK2 proprotein convertase subtilisin/kexin type 2 991185 2 2 2 0 0 1 0 0 1 0 0.19 0.94 -3557 TMC2 transmembrane channel-like 2 1262937 2 2 2 0 0 1 1 0 0 0 0.19 0.94 -3558 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 718419 1 1 1 0 0 0 0 0 1 0 0.19 0.94 -3559 EIF3G eukaryotic translation initiation factor 3, subunit G 460863 1 1 1 2 0 1 0 0 0 0 0.19 0.94 -3560 RAB30 RAB30, member RAS oncogene family 318396 1 1 1 1 0 0 1 0 0 0 0.19 0.94 -3561 PLEKHA8 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 661128 1 1 1 2 0 0 0 0 1 0 0.19 0.94 -3562 ACTR3B ARP3 actin-related protein 3 homolog B (yeast) 616005 1 1 1 0 1 0 0 0 0 0 0.19 0.94 -3563 LIMS2 LIM and senescent cell antigen-like domains 2 365547 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3564 P2RY10 purinergic receptor P2Y, G-protein coupled, 10 519168 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3565 IL34 365547 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3566 GJC1 gap junction protein, gamma 1, 45kDa 605865 1 1 1 0 0 0 1 0 0 0 0.19 0.94 -3567 AP1M2 adaptor-related protein complex 1, mu 2 subunit 669240 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3568 PHLPP1 1548378 3 3 3 1 1 0 0 1 1 0 0.19 0.94 -3569 PTGDS prostaglandin D2 synthase 21kDa (brain) 195195 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3570 DCAF13 865956 2 2 2 1 0 0 2 0 0 0 0.19 0.94 -3571 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 675324 1 1 1 0 0 0 0 0 1 0 0.19 0.94 -3572 GPM6B glycoprotein M6B 559728 1 1 1 0 0 0 1 0 0 0 0.19 0.94 -3573 LST-3TM12 1001325 2 2 2 0 2 0 0 0 0 0 0.19 0.94 -3574 ZWILCH Zwilch, kinetochore associated, homolog (Drosophila) 936936 2 2 2 0 0 0 2 0 0 0 0.19 0.94 -3575 SRPX sushi-repeat-containing protein, X-linked 676338 1 1 1 0 0 0 0 0 1 0 0.19 0.94 -3576 DENND2D DENN/MADD domain containing 2D 729066 2 2 2 1 0 1 0 1 0 0 0.19 0.94 -3577 NIF3L1 NIF3 NGG1 interacting factor 3-like 1 (S. pombe) 587106 1 1 1 0 0 0 0 0 1 0 0.19 0.94 -3578 PEX19 peroxisomal biogenesis factor 19 472524 1 1 1 0 0 0 1 0 0 0 0.19 0.94 -3579 CYP11B1 cytochrome P450, family 11, subfamily B, polypeptide 1 784836 2 2 2 0 0 1 1 0 0 0 0.19 0.94 -3580 GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 536913 1 1 1 0 0 0 1 0 0 0 0.19 0.94 -3581 MYO1H myosin IH 1618344 3 3 3 0 1 1 0 0 1 0 0.19 0.94 -3582 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 1837875 3 3 3 0 1 0 0 0 2 0 0.19 0.94 -3583 HOXB8 homeobox B8 328536 1 1 1 0 0 1 0 0 0 0 0.19 0.94 -3584 FABP2 fatty acid binding protein 2, intestinal 210405 1 1 1 0 0 0 1 0 0 0 0.19 0.94 -3585 SLC25A40 solute carrier family 25, member 40 535899 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3586 SCAMP2 secretory carrier membrane protein 2 463398 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3587 CEP55 centrosomal protein 55kDa 723489 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3588 ASB8 ankyrin repeat and SOCS box-containing 8 445653 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3589 AP4E1 adaptor-related protein complex 4, epsilon 1 subunit 1695408 3 3 3 0 0 2 0 0 1 0 0.20 0.94 -3590 IQSEC1 IQ motif and Sec7 domain 1 1166607 2 2 2 0 0 0 1 0 1 0 0.20 0.94 -3591 KIFC3 kinesin family member C3 666705 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3592 GPR110 G protein-coupled receptor 110 1414023 3 3 3 0 1 2 0 0 0 0 0.20 0.94 -3593 MSH6 mutS homolog 6 (E. coli) 1980342 4 4 4 0 0 2 2 0 0 0 0.20 0.94 -3594 TACC3 transforming, acidic coiled-coil containing protein 3 478101 1 1 1 1 0 1 0 0 0 0 0.20 0.94 -3595 RPAP3 RNA polymerase II associated protein 3 1045434 2 2 2 0 1 0 0 0 1 0 0.20 0.94 -3596 ZNF642 zinc finger protein 642 811707 2 2 2 0 1 0 0 1 0 0 0.20 0.94 -3597 PRMT5 protein arginine methyltransferase 5 1036815 2 2 2 1 1 0 1 0 0 0 0.20 0.94 -3598 SATB2 SATB homeobox 2 1048983 2 2 2 0 1 1 0 0 0 0 0.20 0.94 -3599 RPS6KA2 ribosomal protein S6 kinase, 90kDa, polypeptide 2 1103232 2 2 2 0 1 0 0 1 0 0 0.20 0.94 -3600 TMEM50B transmembrane protein 50B 254007 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3601 GPD1L glycerol-3-phosphate dehydrogenase 1-like 464412 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3602 HAL histidine ammonia-lyase 1041378 2 2 2 0 1 0 1 0 0 0 0.20 0.94 -3603 PLA2G2D phospholipase A2, group IID 230178 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3604 VPS37A vacuolar protein sorting 37 homolog A (S. cerevisiae) 562263 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3605 MTBP Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa 1421121 3 3 3 0 0 1 0 1 1 0 0.20 0.94 -3606 NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 389376 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3607 CCDC69 coiled-coil domain containing 69 464412 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3608 SLC4A11 solute carrier family 4, sodium borate transporter, member 11 1040364 2 2 2 0 0 0 1 1 0 0 0.20 0.94 -3609 P2RX3 purinergic receptor P2X, ligand-gated ion channel, 3 595218 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3610 OFD1 oral-facial-digital syndrome 1 1579305 3 3 3 0 0 1 1 0 1 0 0.20 0.94 -3611 SLC5A9 solute carrier family 5 (sodium/glucose cotransporter), member 9 1105767 2 2 2 0 0 1 1 0 0 0 0.20 0.94 -3612 CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1 671775 1 1 1 1 0 0 0 0 1 0 0.20 0.94 -3613 ENO1 enolase 1, (alpha) 683943 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3614 PTCD2 pentatricopeptide repeat domain 2 611949 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3615 MYNN myoneurin 943527 2 2 2 0 1 1 0 0 0 0 0.20 0.94 -3616 STAG3L2 stromal antigen 3-like 2 214968 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3617 PCDHB10 protocadherin beta 10 1197027 2 2 2 1 0 2 0 0 0 0 0.20 0.94 -3618 PRMT8 protein arginine methyltransferase 8 621075 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3619 ACTL6B actin-like 6B 616512 1 1 1 1 0 0 0 0 1 0 0.20 0.94 -3620 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 291525 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3621 LNP1 leukemia NUP98 fusion partner 1 278343 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3622 HLX H2.0-like homeobox 632229 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3623 RING1 ring finger protein 1 631215 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3624 ZDHHC3 zinc finger, DHHC-type containing 3 513084 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3625 ARHGEF18 rho/rac guanine nucleotide exchange factor (GEF) 18 643383 1 1 1 1 0 0 1 0 0 0 0.20 0.94 -3626 GIMAP8 GTPase, IMAP family member 8 1021098 2 2 2 0 0 1 1 0 0 0 0.20 0.94 -3627 ASB7 ankyrin repeat and SOCS box-containing 7 495339 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3628 POLR3E polymerase (RNA) III (DNA directed) polypeptide E (80kD) 953667 2 2 2 0 0 1 0 0 1 0 0.20 0.94 -3629 CPA4 carboxypeptidase A4 664170 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3630 SEC24C SEC24 related gene family, member C (S. cerevisiae) 1710111 3 3 3 2 1 0 1 0 1 0 0.20 0.94 -3631 ZNF345 zinc finger protein 345 745797 2 2 2 0 0 0 2 0 0 0 0.20 0.94 -3632 RAB11FIP4 RAB11 family interacting protein 4 (class II) 516633 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3633 SPTLC2 serine palmitoyltransferase, long chain base subunit 2 811707 2 2 2 0 0 0 2 0 0 0 0.20 0.94 -3634 C2orf34 chromosome 2 open reading frame 34 443118 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3635 TMEM178 transmembrane protein 178 256542 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3636 PEX26 peroxisome biogenesis factor 26 356928 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3637 NMT1 N-myristoyltransferase 1 736671 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3638 SPATA6 spermatogenesis associated 6 751374 2 2 2 0 1 1 0 0 0 0 0.20 0.94 -3639 NKX3-1 NK3 homeobox 1 214461 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3640 CCIN calicin 897897 2 2 2 0 1 0 1 0 0 0 0.20 0.94 -3641 SNX11 sorting nexin 11 424359 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3642 CLEC11A C-type lectin domain family 11, member A 266175 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3643 TNRC18 trinucleotide repeat containing 18 1758276 3 3 3 2 0 2 1 0 0 0 0.20 0.94 -3644 MAGEA4 melanoma antigen family A, 4 485706 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3645 ZNF443 zinc finger protein 443 1029717 2 2 2 0 0 0 2 0 0 0 0.20 0.94 -3646 FAM26F family with sequence similarity 26, member F 216489 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3647 CCDC87 coiled-coil domain containing 87 1261923 2 2 2 0 0 1 0 0 1 0 0.20 0.94 -3648 CDKL2 cyclin-dependent kinase-like 2 (CDC2-related kinase) 736164 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3649 TAGLN2 transgelin 2 312312 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3650 TBC1D2B TBC1 domain family, member 2B 1142271 2 2 2 0 0 1 1 0 0 0 0.20 0.94 -3651 ADCY5 adenylate cyclase 5 1385124 3 3 3 1 0 2 1 0 0 0 0.20 0.94 -3652 TEAD4 TEA domain family member 4 683943 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3653 CHRD chordin 1146327 2 2 2 0 0 2 0 0 0 0 0.20 0.94 -3654 PABPC5 poly(A) binding protein, cytoplasmic 5 584571 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3655 NSL1 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) 440583 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3656 FAM133A family with sequence similarity 133, member A 380757 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3657 TMEM87B transmembrane protein 87B 797004 2 2 2 1 1 0 0 0 1 0 0.20 0.94 -3658 CTSB cathepsin B 533364 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3659 BCL7B B-cell CLL/lymphoma 7B 272259 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3660 PRAMEF17 PRAME family member 17 501930 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3661 SLC29A4 solute carrier family 29 (nucleoside transporters), member 4 402051 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3662 DNPEP aspartyl aminopeptidase 749346 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3663 ARL8B ADP-ribosylation factor-like 8B 234234 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3664 HIST1H3I histone cluster 1, H3i 210405 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3665 RTKN2 rhotekin 2 919698 2 2 2 0 1 0 1 0 0 0 0.20 0.94 -3666 SARS seryl-tRNA synthetase 805623 2 2 2 0 0 1 1 0 0 0 0.20 0.94 -3667 HTR2B 5-hydroxytryptamine (serotonin) receptor 2B 739206 1 1 1 1 0 0 0 0 1 0 0.20 0.94 -3668 COX4I2 cytochrome c oxidase subunit IV isoform 2 (lung) 269724 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3669 EXOC6 exocyst complex component 6 1261416 2 2 2 1 0 0 0 1 1 0 0.20 0.94 -3670 TIFA TRAF-interacting protein with forkhead-associated domain 283413 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3671 PSD2 pleckstrin and Sec7 domain containing 2 1202604 2 2 2 0 0 1 0 0 1 0 0.20 0.94 -3672 KIAA1143 KIAA1143 230685 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3673 MRPL30 mitochondrial ribosomal protein L30 256542 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3674 MGC42105 670761 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3675 CDK14 713856 2 2 2 2 1 1 0 0 0 0 0.20 0.94 -3676 KRTAP10-11 keratin associated protein 10-11 456807 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3677 WNT2B wingless-type MMTV integration site family, member 2B 623103 1 1 1 1 0 1 0 0 0 0 0.20 0.94 -3678 C6orf97 chromosome 6 open reading frame 97 1080417 2 2 2 0 0 0 1 1 0 0 0.20 0.94 -3679 C3orf52 chromosome 3 open reading frame 52 321438 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3680 GPX5 glutathione peroxidase 5 (epididymal androgen-related protein) 347802 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3681 ACCN3 amiloride-sensitive cation channel 3 806130 2 2 2 1 1 0 0 1 0 0 0.20 0.94 -3682 ACADSB acyl-Coenzyme A dehydrogenase, short/branched chain 657579 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3683 MNAT1 menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) 487734 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3684 FAM18B2 family with sequence similarity 18, member B2 342225 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3685 SLC39A5 solute carrier family 39 (metal ion transporter), member 5 843141 2 2 2 0 0 1 1 0 0 0 0.20 0.94 -3686 DDRGK1 284427 1 1 1 0 1 0 0 0 0 0 0.20 0.94 -3687 DNAH3 dynein, axonemal, heavy chain 3 6366399 10 10 10 4 5 2 2 1 0 0 0.20 0.94 -3688 DDX3X DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked 1022619 2 2 2 2 0 2 0 0 0 0 0.20 0.94 -3689 FAM199X 581022 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3690 MEF2A myocyte enhancer factor 2A 671268 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3691 UPK3A uroplakin 3A 419796 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3692 HRG histidine-rich glycoprotein 814242 2 2 2 0 2 0 0 0 0 0 0.20 0.94 -3693 HAP1 huntingtin-associated protein 1 (neuroan 1) 701688 2 2 2 1 0 2 0 0 0 0 0.20 0.94 -3694 TRAPPC1 trafficking protein particle complex 1 230178 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3695 HIST1H3F histone cluster 1, H3f 210405 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3696 SLMAP sarcolemma associated protein 1277640 2 2 2 1 0 0 1 0 1 0 0.20 0.94 -3697 C19orf46 chromosome 19 open reading frame 46 495846 1 1 1 1 0 0 0 1 0 0 0.20 0.94 -3698 EIF3K eukaryotic translation initiation factor 3, subunit K 349323 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3699 ACADVL acyl-Coenzyme A dehydrogenase, very long chain 824889 2 2 2 0 0 2 0 0 0 0 0.20 0.94 -3700 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 525252 1 1 1 2 0 1 0 0 0 0 0.20 0.94 -3701 LRTOMT 301665 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3702 PLEKHH1 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 1924065 3 3 3 0 0 0 1 0 2 0 0.20 0.94 -3703 SLITRK2 SLIT and NTRK-like family, member 2 1288794 2 2 2 0 1 0 0 0 1 0 0.20 0.94 -3704 KRT33A keratin 33A 630201 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3705 CCPG1 cell cycle progression 1 1167114 2 2 2 0 0 0 1 0 1 0 0.20 0.94 -3706 MTAP methylthioadenosine phosphorylase 436020 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3707 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 1673607 3 3 3 0 0 2 0 1 0 0 0.20 0.94 -3708 ANXA11 annexin A11 657072 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3709 KIAA1191 KIAA1191 479622 1 1 1 0 0 0 1 0 0 0 0.20 0.94 -3710 PRICKLE2 prickle homolog 2 (Drosophila) 1299441 2 2 2 0 1 0 0 0 1 0 0.20 0.94 -3711 HAT1 histone acetyltransferase 1 661128 1 1 1 0 0 0 0 0 1 0 0.20 0.94 -3712 SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 667719 1 1 1 0 0 0 0 1 0 0 0.20 0.94 -3713 C12orf77 226629 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3714 TAB3 1098669 4 2 4 0 0 0 1 0 0 3 0.20 0.94 -3715 CSNK1E casein kinase 1, epsilon 421317 1 1 1 0 0 1 0 0 0 0 0.20 0.94 -3716 HCN3 hyperpolarization activated cyclic nucleotide-gated potassium channel 3 1021605 2 2 2 0 1 1 0 0 0 0 0.20 0.94 -3717 TJP1 tight junction protein 1 (zona occludens 1) 2657694 4 4 4 2 0 1 0 1 2 0 0.20 0.94 -3718 IGSF8 immunoglobulin superfamily, member 8 911586 2 2 2 2 1 0 0 1 0 0 0.20 0.95 -3719 ERBB4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 2047773 4 4 4 1 2 2 0 0 0 0 0.20 0.95 -3720 EDA2R ectodysplasin A2 receptor 463398 1 1 1 1 0 0 0 1 0 0 0.20 0.95 -3721 PLA2G2C phospholipase A2, group IIC 235755 1 1 1 0 0 1 0 0 0 0 0.20 0.95 -3722 ZNF70 zinc finger protein 70 681915 1 1 1 0 0 0 1 0 0 0 0.20 0.95 -3723 ZNF597 zinc finger protein 597 652509 1 1 1 1 0 0 0 0 1 0 0.20 0.95 -3724 FGD3 FYVE, RhoGEF and PH domain containing 3 792441 2 2 2 1 1 1 0 0 0 0 0.20 0.95 -3725 OR10A4 olfactory receptor, family 10, subfamily A, member 4 482664 1 1 1 0 0 0 1 0 0 0 0.20 0.95 -3726 RHOB ras homolog gene family, member B 243867 1 1 1 0 1 0 0 0 0 0 0.20 0.95 -3727 GLIPR1L2 GLI pathogenesis-related 1 like 2 393432 1 1 1 0 0 1 0 0 0 0 0.20 0.95 -3728 ASTN1 astrotactin 1 2004678 4 4 4 2 0 4 0 0 0 0 0.20 0.95 -3729 APOL5 apolipoprotein L, 5 658086 1 1 1 0 0 1 0 0 0 0 0.20 0.95 -3730 SPARCL1 SPARC-like 1 (mast9, hevin) 1031745 2 2 2 0 0 0 1 0 1 0 0.20 0.95 -3731 HEPH hephaestin 1809990 3 3 3 1 0 2 0 1 0 0 0.20 0.95 -3732 MBD3L1 methyl-CpG binding domain protein 3-like 1 298623 1 1 1 0 0 1 0 0 0 0 0.20 0.95 -3733 RABL2A RAB, member of RAS oncogene family-like 2A 364533 1 1 1 0 0 1 0 0 0 0 0.20 0.95 -3734 GBP7 guanylate binding protein 7 992199 2 2 2 0 0 1 0 1 0 0 0.20 0.95 -3735 MRPS22 mitochondrial ribosomal protein S22 557700 1 1 1 0 0 0 0 1 0 0 0.20 0.95 -3736 CALR calreticulin 562770 1 1 1 0 0 0 1 0 0 0 0.20 0.95 -3737 SYT6 synaptotagmin VI 660114 1 1 1 0 0 0 0 0 1 0 0.20 0.95 -3738 ALDH1A1 aldehyde dehydrogenase 1 family, member A1 789906 2 2 2 2 0 2 0 0 0 0 0.20 0.95 -3739 EMB embigin homolog (mouse) 458328 1 1 1 1 0 0 0 1 0 0 0.20 0.95 -3740 RBP1 retinol binding protein 1, cellular 197223 2 1 2 0 0 2 0 0 0 0 0.20 0.95 -3741 C19orf54 chromosome 19 open reading frame 54 278850 1 1 1 0 0 1 0 0 0 0 0.20 0.95 -3742 PARP6 poly (ADP-ribose) polymerase family, member 6 946569 2 2 2 0 0 1 0 1 0 0 0.21 0.95 -3743 NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 1194999 4 2 4 0 1 0 0 0 0 3 0.21 0.95 -3744 STARD7 StAR-related lipid transfer (START) domain containing 7 485706 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3745 ZBTB10 zinc finger and BTB domain containing 10 804609 2 2 2 0 0 1 1 0 0 0 0.21 0.95 -3746 AGMAT agmatine ureohydrolase (agmatinase) 411177 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3747 NCAM2 neural cell adhesion molecule 2 1300962 2 2 2 2 0 1 0 0 1 0 0.21 0.95 -3748 TRIM21 tripartite motif-containing 21 736164 2 2 2 1 1 1 0 0 0 0 0.21 0.95 -3749 LRPPRC leucine-rich PPR-motif containing 2121288 4 4 4 0 1 0 1 1 1 0 0.21 0.95 -3750 TPD52L1 tumor protein D52-like 1 314340 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3751 ELK3 ELK3, ETS-domain protein (SRF accessory protein 2) 617526 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3752 SLC25A19 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 500409 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3753 ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) 1200069 2 2 2 0 0 1 1 0 0 0 0.21 0.95 -3754 ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 252993 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3755 CEP290 centrosomal protein 290kDa 3392337 5 5 5 0 1 1 1 0 2 0 0.21 0.95 -3756 TP53I3 tumor protein p53 inducible protein 3 516633 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3757 RFX2 regulatory factor X, 2 (influences HLA class II expression) 587106 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3758 CD9 CD9 molecule 340704 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3759 RPS6 ribosomal protein S6 392418 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3760 FAM49A family with sequence similarity 49, member A 513084 1 1 1 1 0 0 0 0 1 0 0.21 0.95 -3761 CCNB1IP1 cyclin B1 interacting protein 1 428922 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3762 RCCD1 RCC1 domain containing 1 301158 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3763 SRRT 1372449 3 3 3 1 1 1 1 0 0 0 0.21 0.95 -3764 GUF1 GUF1 GTPase homolog (S. cerevisiae) 933387 2 2 2 0 0 1 1 0 0 0 0.21 0.95 -3765 CEP76 centrosomal protein 76kDa 994227 2 2 2 0 0 1 0 1 0 0 0.21 0.95 -3766 PRB2 proline-rich protein BstNI subfamily 2 640341 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3767 DMWD dystrophia myotonica, WD repeat containing 697632 1 1 1 1 0 1 0 0 0 0 0.21 0.95 -3768 CHIA chitinase, acidic 747825 2 2 2 0 1 0 0 1 0 0 0.21 0.95 -3769 SIPA1 signal-induced proliferation-associated gene 1 696111 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3770 NSDHL NAD(P) dependent steroid dehydrogenase-like 583050 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3771 MTCH1 mitochondrial carrier homolog 1 (C. elegans) 345774 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3772 NCF2 neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2) 831987 2 2 2 2 1 0 1 0 0 0 0.21 0.95 -3773 LBXCOR1 LBXCOR1 homolog (mouse) 601809 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3774 CENPO centromere protein O 469989 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3775 TMEM173 transmembrane protein 173 590148 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3776 TSPYL1 TSPY-like 1 668226 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3777 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta 501930 1 1 1 0 0 0 0 1 0 0 0.21 0.95 -3778 DMRT1 doublesex and mab-3 related transcription factor 1 397488 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3779 AOC3 amine oxidase, copper containing 3 (vascular adhesion protein 1) 1164072 2 2 2 1 0 1 0 0 1 0 0.21 0.95 -3780 MAP3K8 mitogen-activated protein kinase kinase kinase 8 726024 2 2 2 0 1 0 1 0 0 0 0.21 0.95 -3781 RPP14 ribonuclease P/MRP 14kDa subunit 200265 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3782 RHOXF2 Rhox homeobox family, member 2 467961 1 1 1 1 0 0 1 0 0 0 0.21 0.95 -3783 BLOC1S2 biogenesis of lysosome-related organelles complex-1, subunit 2 218517 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3784 OR10G2 olfactory receptor, family 10, subfamily G, member 2 475059 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3785 TMED10 transmembrane emp24-like trafficking protein 10 (yeast) 344760 1 1 1 0 0 0 0 1 0 0 0.21 0.95 -3786 SFRS9 splicing factor, arginine/serine-rich 9 248430 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3787 ZNF772 zinc finger protein 772 755430 2 2 2 0 0 2 0 0 0 0 0.21 0.95 -3788 LGR4 leucine-rich repeat-containing G protein-coupled receptor 4 1388673 3 3 3 1 1 1 1 0 0 0 0.21 0.95 -3789 SLC25A41 solute carrier family 25, member 41 227643 1 1 1 0 0 0 0 1 0 0 0.21 0.95 -3790 RAB28 RAB28, member RAS oncogene family 359463 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3791 C20orf108 chromosome 20 open reading frame 108 203307 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3792 NRXN2 neurexin 2 1862718 3 3 3 0 1 2 0 0 0 0 0.21 0.95 -3793 TASP1 taspase, threonine aspartase, 1 666705 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3794 MDP1 281385 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3795 TWSG1 twisted gastrulation homolog 1 (Drosophila) 348816 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3796 GPR63 G protein-coupled receptor 63 640848 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3797 POU6F1 POU class 6 homeobox 1 364026 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3798 POFUT2 protein O-fucosyltransferase 2 492804 1 1 1 1 0 1 0 0 0 0 0.21 0.95 -3799 SLC6A4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 986115 2 2 2 1 0 2 0 0 0 0 0.21 0.95 -3800 SLC25A32 solute carrier family 25, member 32 414726 1 1 1 0 0 0 0 1 0 0 0.21 0.95 -3801 FAM129B family with sequence similarity 129, member B 893841 2 2 2 0 2 0 0 0 0 0 0.21 0.95 -3802 CEP170 centrosomal protein 170kDa 2341326 4 4 4 0 0 1 1 1 1 0 0.21 0.95 -3803 L3MBTL2 l(3)mbt-like 2 (Drosophila) 982566 2 2 2 0 0 2 0 0 0 0 0.21 0.95 -3804 SPACA3 sperm acrosome associated 3 319410 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3805 BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) 365547 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3806 LRRN4 796497 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3807 SLC35C1 solute carrier family 35, member C1 519168 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3808 ZNF552 zinc finger protein 552 607893 2 1 2 0 0 0 0 0 0 2 0.21 0.95 -3809 PSMD5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 698646 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3810 TRIM6 tripartite motif-containing 6 802581 2 2 2 0 2 0 0 0 0 0 0.21 0.95 -3811 POLDIP3 polymerase (DNA-directed), delta interacting protein 3 653016 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3812 TMBIM4 transmembrane BAX inhibitor motif containing 4 326508 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3813 NLRP4 NLR family, pyrin domain containing 4 1531647 3 3 3 1 0 2 0 1 0 0 0.21 0.95 -3814 C17orf53 chromosome 17 open reading frame 53 1002339 2 2 2 2 0 0 1 0 1 0 0.21 0.95 -3815 ETV3 ets variant gene 3 225108 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3816 FLJ46321 2406729 4 4 4 0 1 2 1 0 0 0 0.21 0.95 -3817 PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B 277329 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3818 GPR109A G protein-coupled receptor 109A 555672 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3819 ANP32C acidic (leucine-rich) nuclear phosphoprotein 32 family, member C 359463 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3820 FBXL4 F-box and leucine-rich repeat protein 4 960258 2 2 2 0 0 0 1 1 0 0 0.21 0.95 -3821 C20orf106 chromosome 20 open reading frame 106 265668 1 1 1 0 0 0 1 0 0 0 0.21 0.95 -3822 MSGN1 mesogenin 1 297102 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3823 GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 629187 1 1 1 1 0 0 0 1 0 0 0.21 0.95 -3824 LRRC41 leucine rich repeat containing 41 1153932 2 2 2 2 0 1 0 0 1 0 0.21 0.95 -3825 PACRG PARK2 co-regulated 402558 1 1 1 0 0 0 0 1 0 0 0.21 0.95 -3826 TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 545025 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3827 HNRNPA3 558207 1 1 1 1 0 0 0 0 1 0 0.21 0.95 -3828 ZNF238 zinc finger protein 238 813228 2 2 2 1 1 0 1 0 0 0 0.21 0.95 -3829 RNF219 ring finger protein 219 1117428 2 2 2 0 0 0 2 0 0 0 0.21 0.95 -3830 CCL21 chemokine (C-C motif) ligand 21 213447 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3831 CRTAP cartilage associated protein 384813 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3832 SFI1 Sfi1 homolog, spindle assembly associated (yeast) 1338480 2 2 2 3 0 0 0 0 2 0 0.21 0.95 -3833 APOL1 apolipoprotein L, 1 643383 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3834 GLT8D1 glycosyltransferase 8 domain containing 1 584064 1 1 1 0 0 0 0 1 0 0 0.21 0.95 -3835 DLK1 delta-like 1 homolog (Drosophila) 558207 1 1 1 1 1 0 0 0 0 0 0.21 0.95 -3836 CHRM5 cholinergic receptor, muscarinic 5 812721 2 2 2 0 1 0 0 0 1 0 0.21 0.95 -3837 OR51M1 olfactory receptor, family 51, subfamily M, member 1 499395 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3838 NOS3 nitric oxide synthase 3 (endothelial cell) 823875 2 2 2 0 1 0 1 0 0 0 0.21 0.95 -3839 BHLHE40 595725 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3840 LATS2 LATS, large tumor suppressor, homolog 2 (Drosophila) 1155960 2 2 2 0 1 0 0 0 1 0 0.21 0.95 -3841 ALG1 asparagine-linked glycosylation 1 homolog (S. cerevisiae, beta-1,4-mannosyltransferase) 596739 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3842 KIFC2 kinesin family member C2 573417 1 1 1 0 0 1 0 0 0 0 0.21 0.95 -3843 CDH22 cadherin-like 22 859365 2 2 2 1 0 2 0 0 0 0 0.21 0.95 -3844 WRNIP1 Werner helicase interacting protein 1 608400 1 1 1 1 0 1 0 0 0 0 0.21 0.95 -3845 MAPKAPK3 mitogen-activated protein kinase-activated protein kinase 3 551616 1 1 1 0 1 0 0 0 0 0 0.21 0.95 -3846 BTBD10 BTB (POZ) domain containing 10 740220 2 2 2 0 2 0 0 0 0 0 0.21 0.95 -3847 CDC42BPG CDC42 binding protein kinase gamma (DMPK-like) 1340001 2 2 2 1 0 0 1 0 1 0 0.21 0.95 -3848 ZNF230 zinc finger protein 230 730587 2 2 2 0 0 2 0 0 0 0 0.21 0.95 -3849 RFX6 1336452 3 3 3 0 1 1 1 0 0 0 0.21 0.95 -3850 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kDa) 285948 1 1 1 0 0 0 0 0 1 0 0.21 0.95 -3851 IFT122 intraflagellar transport 122 homolog (Chlamydomonas) 2005692 3 3 3 1 0 0 0 1 2 0 0.21 0.95 -3852 WBSCR28 Williams-Beuren syndrome chromosome region 28 410670 1 1 1 0 0 0 1 0 0 0 0.21 0.96 -3853 SLC38A8 solute carrier family 38, member 8 599274 1 1 1 0 0 1 0 0 0 0 0.21 0.96 -3854 CACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit 3384225 4 4 4 3 1 0 1 0 2 0 0.21 0.96 -3855 GNL2 guanine nucleotide binding protein-like 2 (nucleolar) 1145820 2 2 2 0 0 1 1 0 0 0 0.21 0.96 -3856 STXBP1 syntaxin binding protein 1 980031 2 2 2 0 0 1 1 0 0 0 0.21 0.96 -3857 PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 1854606 3 3 3 0 2 0 0 0 1 0 0.21 0.96 -3858 ZNF527 zinc finger protein 527 935922 2 2 2 0 0 2 0 0 0 0 0.21 0.96 -3859 C2orf16 chromosome 2 open reading frame 16 3021213 5 5 5 1 1 1 2 0 1 0 0.21 0.96 -3860 ZNF347 zinc finger protein 347 1287273 2 2 2 0 0 0 1 0 1 0 0.21 0.96 -3861 TRIM23 tripartite motif-containing 23 911079 2 2 2 0 0 0 1 1 0 0 0.21 0.96 -3862 CNOT8 CCR4-NOT transcription complex, subunit 8 457821 1 1 1 0 0 1 0 0 0 0 0.21 0.96 -3863 FAM22G family with sequence similarity 22, member G 641355 1 1 1 0 0 0 1 0 0 0 0.21 0.96 -3864 L3MBTL l(3)mbt-like (Drosophila) 1107288 2 2 2 0 2 0 0 0 0 0 0.21 0.96 -3865 SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 940992 2 2 2 0 0 1 1 0 0 0 0.21 0.96 -3866 COQ10A coenzyme Q10 homolog A (S. cerevisiae) 343239 1 1 1 0 1 0 0 0 0 0 0.21 0.96 -3867 ADD1 adducin 1 (alpha) 1195506 2 2 2 0 0 2 0 0 0 0 0.21 0.96 -3868 TDRD10 tudor domain containing 10 599274 1 1 1 0 0 0 0 0 1 0 0.21 0.96 -3869 C1orf14 chromosome 1 open reading frame 14 807651 2 2 2 0 1 0 1 0 0 0 0.21 0.96 -3870 RNF144A ring finger protein 144A 459849 1 1 1 0 0 1 0 0 0 0 0.21 0.96 -3871 FKBP11 FK506 binding protein 11, 19 kDa 308763 1 1 1 0 0 1 0 0 0 0 0.21 0.96 -3872 PBX4 pre-B-cell leukemia homeobox 4 386334 1 1 1 0 0 1 0 0 0 0 0.21 0.96 -3873 KCNK7 potassium channel, subfamily K, member 7 262626 1 1 1 0 0 0 1 0 0 0 0.21 0.96 -3874 GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 2283021 4 4 4 1 2 1 1 0 0 0 0.21 0.96 -3875 BCL2L11 BCL2-like 11 (apoptosis facilitator) 308763 1 1 1 0 1 0 0 0 0 0 0.21 0.96 -3876 KIAA1377 KIAA1377 1722786 3 3 3 1 1 1 1 0 0 0 0.21 0.96 -3877 TOMM34 translocase of outer mitochondrial membrane 34 419289 1 1 1 0 1 0 0 0 0 0 0.21 0.96 -3878 SAGE1 sarcoma antigen 1 1415037 3 3 3 3 1 1 0 1 0 0 0.21 0.96 -3879 WDR64 WD repeat domain 64 1037322 2 2 2 0 0 0 2 0 0 0 0.21 0.96 -3880 HDLBP high density lipoprotein binding protein (vigilin) 1911390 3 3 3 0 0 1 0 2 0 0 0.21 0.96 -3881 TRMT5 TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) 785850 1 1 1 0 0 0 0 0 1 0 0.21 0.96 -3882 PPT2 palmitoyl-protein thioesterase 2 481650 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3883 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 446667 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3884 ZUFSP zinc finger with UFM1-specific peptidase domain 898911 2 2 2 0 0 0 2 0 0 0 0.22 0.96 -3885 PGCP 733122 2 2 2 0 1 0 0 1 0 0 0.22 0.96 -3886 LCAT lecithin-cholesterol acyltransferase 554658 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3887 C9orf100 chromosome 9 open reading frame 100 424866 1 1 1 1 0 0 1 0 0 0 0.22 0.96 -3888 CLDN12 claudin 12 374673 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3889 IKZF1 IKAROS family zinc finger 1 (Ikaros) 699660 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3890 GRIK5 glutamate receptor, ionotropic, kainate 5 1179282 2 2 2 0 0 1 1 0 0 0 0.22 0.96 -3891 KRT4 keratin 4 923247 2 2 2 0 0 0 1 1 0 0 0.22 0.96 -3892 FSD1 fibronectin type III and SPRY domain containing 1 482664 1 1 1 1 1 0 0 0 0 0 0.22 0.96 -3893 SCGN secretagogin, EF-hand calcium binding protein 443625 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3894 TMEM174 transmembrane protein 174 375180 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3895 NUDCD2 NudC domain containing 2 248430 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3896 SNW1 SNW domain containing 1 845169 2 2 2 0 1 0 0 0 1 0 0.22 0.96 -3897 RPL17 ribosomal protein L17 293553 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3898 C11orf66 chromosome 11 open reading frame 66 662649 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3899 TBX19 T-box 19 699153 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3900 C1orf27 chromosome 1 open reading frame 27 620568 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3901 SET SET translocation (myeloid leukemia-associated) 400023 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3902 FOXN2 forkhead box N2 667212 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3903 OR1L4 olfactory receptor, family 1, subfamily L, member 4 476580 1 1 1 1 0 0 1 0 0 0 0.22 0.96 -3904 GEFT 944034 3 2 3 0 1 1 1 0 0 0 0.22 0.96 -3905 DNM1 dynamin 1 1114893 2 2 2 0 0 2 0 0 0 0 0.22 0.96 -3906 IRF3 interferon regulatory factor 3 646425 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3907 CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 226122 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3908 OPHN1 oligophrenin 1 1268007 2 2 2 0 0 0 1 0 1 0 0.22 0.96 -3909 STX6 syntaxin 6 385827 1 1 1 1 0 0 0 1 0 0 0.22 0.96 -3910 CD8A CD8a molecule 275808 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3911 STAG1 stromal antigen 1 1981863 3 3 3 2 0 1 1 0 1 0 0.22 0.96 -3912 NACA nascent polypeptide-associated complex alpha subunit 1758276 3 3 3 0 1 1 1 0 0 0 0.22 0.96 -3913 PGAP3 290511 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3914 IKZF2 IKAROS family zinc finger 2 (Helios) 815763 2 2 2 1 1 1 0 0 0 0 0.22 0.96 -3915 PAPPA pregnancy-associated plasma protein A, pappalysin 1 2308371 4 4 4 1 2 2 0 0 0 0 0.22 0.96 -3916 TMED7 transmembrane emp24 protein transport domain containing 7 261105 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3917 MANEA mannosidase, endo-alpha 712335 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3918 RCSD1 RCSD domain containing 1 611949 1 1 1 1 0 1 0 0 0 0 0.22 0.96 -3919 SEH1L SEH1-like (S. cerevisiae) 610428 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3920 STOX1 storkhead box 1 1354704 3 3 3 0 1 1 0 1 0 0 0.22 0.96 -3921 POLR1D polymerase (RNA) I polypeptide D, 16kDa 370617 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3922 UEVLD UEV and lactate/malate dehyrogenase domains 718926 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3923 FGD4 FYVE, RhoGEF and PH domain containing 4 1197027 2 2 2 2 0 1 0 0 1 0 0.22 0.96 -3924 SLC4A4 solute carrier family 4, sodium bicarbonate cotransporter, member 4 1826721 3 3 3 0 1 1 0 1 0 0 0.22 0.96 -3925 NDFIP1 Nedd4 family interacting protein 1 317889 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3926 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 313833 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3927 MSR1 macrophage scavenger receptor 1 730080 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3928 ETV5 ets variant gene 5 (ets-related molecule) 801567 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3929 G3BP2 GTPase activating protein (SH3 domain) binding protein 2 756951 2 2 2 0 2 0 0 0 0 0 0.22 0.96 -3930 USF1 upstream transcription factor 1 493311 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3931 TMEM38B transmembrane protein 38B 440076 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3932 PCDHB14 protocadherin beta 14 1118949 2 2 2 1 0 0 1 0 1 0 0.22 0.96 -3933 TTC7A tetratricopeptide repeat domain 7A 1242657 2 2 2 1 1 1 0 0 0 0 0.22 0.96 -3934 CHRND cholinergic receptor, nicotinic, delta 810693 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3935 ALG10 asparagine-linked glycosylation 10 homolog (yeast, alpha-1,2-glucosyltransferase) 727038 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3936 STK32B serine/threonine kinase 32B 594204 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3937 KATNB1 katanin p80 (WD repeat containing) subunit B 1 693576 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3938 MAGEC1 melanoma antigen family C, 1 1742559 3 3 3 0 1 0 1 0 1 0 0.22 0.96 -3939 C18orf19 chromosome 18 open reading frame 19 421317 1 1 1 1 0 0 1 0 0 0 0.22 0.96 -3940 ZCCHC5 zinc finger, CCHC domain containing 5 726024 1 1 1 1 0 0 1 0 0 0 0.22 0.96 -3941 CCDC84 coiled-coil domain containing 84 443625 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3942 IDH3A isocitrate dehydrogenase 3 (NAD+) alpha 564798 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3943 ZFP30 zinc finger protein 30 homolog (mouse) 799032 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3944 GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 851760 2 2 2 0 0 0 1 0 1 0 0.22 0.96 -3945 CACNG6 calcium channel, voltage-dependent, gamma subunit 6 255528 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3946 FNDC7 fibronectin type III domain containing 7 828945 2 2 2 0 1 0 1 0 0 0 0.22 0.96 -3947 TMEM50A transmembrane protein 50A 252486 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3948 TSR1 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) 1249248 2 2 2 0 0 0 2 0 0 0 0.22 0.96 -3949 DDX27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 1254825 2 2 2 0 0 1 0 0 1 0 0.22 0.96 -3950 FAM81A family with sequence similarity 81, member A 577473 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3951 SLITRK4 SLIT and NTRK-like family, member 4 1276626 3 2 3 0 1 1 0 0 1 0 0.22 0.96 -3952 CD68 CD68 molecule 550602 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3953 NEK6 NIMA (never in mitosis gene a)-related kinase 6 499395 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3954 DYNC1I2 dynein, cytoplasmic 1, intermediate chain 2 890292 2 2 2 0 0 1 1 0 0 0 0.22 0.96 -3955 OR4P4 olfactory receptor, family 4, subfamily P, member 4 478101 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3956 ATP6V1B2 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 736164 1 1 1 1 0 0 0 0 1 0 0.22 0.96 -3957 GRAMD1B GRAM domain containing 1B 1003860 2 2 2 1 1 0 0 0 1 0 0.22 0.96 -3958 DTWD2 DTW domain containing 2 354393 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -3959 ARMC7 armadillo repeat containing 7 221052 1 1 1 1 1 0 0 0 0 0 0.22 0.96 -3960 ZNF426 zinc finger protein 426 856323 2 2 2 0 0 1 1 0 0 0 0.22 0.96 -3961 HTR1B 5-hydroxytryptamine (serotonin) receptor 1B 596232 1 1 1 2 0 0 0 0 1 0 0.22 0.96 -3962 ENAM enamelin 1471821 3 3 3 0 0 2 1 0 0 0 0.22 0.96 -3963 C14orf49 chromosome 14 open reading frame 49 1428219 3 3 3 1 1 2 0 0 0 0 0.22 0.96 -3964 P2RX5 purinergic receptor P2X, ligand-gated ion channel, 5 473538 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3965 OR2D3 olfactory receptor, family 2, subfamily D, member 3 505479 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3966 GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa 458328 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3967 CHD1L chromodomain helicase DNA binding protein 1-like 1346085 2 2 2 0 1 0 0 0 1 0 0.22 0.96 -3968 AIM1 absent in melanoma 1 2306850 4 4 4 1 0 0 3 1 0 0 0.22 0.96 -3969 MMP12 matrix metallopeptidase 12 (macrophage elastase) 736164 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3970 CKAP2L cytoskeleton associated protein 2-like 1152918 2 2 2 0 1 0 1 0 0 0 0.22 0.96 -3971 OASL 2'-5'-oligoadenylate synthetase-like 795483 2 2 2 0 1 1 0 0 0 0 0.22 0.96 -3972 C10orf107 chromosome 10 open reading frame 107 330057 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3973 BEND3 1192464 2 2 2 0 0 2 0 0 0 0 0.22 0.96 -3974 KCNA5 potassium voltage-gated channel, shaker-related subfamily, member 5 791427 2 2 2 1 1 1 0 0 0 0 0.22 0.96 -3975 SYNM 1841931 3 3 3 0 1 1 0 0 1 0 0.22 0.96 -3976 CEP70 centrosomal protein 70kDa 942006 2 2 2 0 0 0 2 0 0 0 0.22 0.96 -3977 HAVCR1 hepatitis A virus cellular receptor 1 571389 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3978 ERVFRDE1 432471 1 1 1 1 1 0 0 0 0 0 0.22 0.96 -3979 ORM2 orosomucoid 2 283920 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3980 OR5L2 olfactory receptor, family 5, subfamily L, member 2 476580 1 1 1 1 0 0 1 0 0 0 0.22 0.96 -3981 TARBP1 TAR (HIV-1) RNA binding protein 1 1975779 3 3 3 0 0 2 0 0 1 0 0.22 0.96 -3982 RNASE3 ribonuclease, RNase A family, 3 (eosinophil cationic protein) 246909 1 1 1 1 1 0 0 0 0 0 0.22 0.96 -3983 WFDC8 WAP four-disulfide core domain 8 380250 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3984 COL19A1 collagen, type XIX, alpha 1 1811511 3 3 3 1 1 0 0 1 1 0 0.22 0.96 -3985 PDCL3 phosducin-like 3 372138 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3986 CERK ceramide kinase 569868 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3987 MMEL1 membrane metallo-endopeptidase-like 1 745797 1 1 1 1 0 0 0 0 1 0 0.22 0.96 -3988 COL5A2 collagen, type V, alpha 2 2305329 4 4 4 1 0 2 1 0 1 0 0.22 0.96 -3989 CHM choroideremia (Rab escort protein 1) 1025154 2 2 2 0 1 0 1 0 0 0 0.22 0.96 -3990 BHMT betaine-homocysteine methyltransferase 616512 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3991 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 1307046 2 2 2 0 0 0 1 0 1 0 0.22 0.96 -3992 WNT5B wingless-type MMTV integration site family, member 5B 505986 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -3993 PECI peroxisomal D3,D2-enoyl-CoA isomerase 599274 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -3994 TRIM10 tripartite motif-containing 10 791934 2 2 2 0 0 2 0 0 0 0 0.22 0.96 -3995 LMX1B LIM homeobox transcription factor 1, beta 506493 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -3996 EFCAB3 EF-hand calcium binding domain 3 694590 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3997 RGS1 regulator of G-protein signaling 1 329550 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -3998 STX17 syntaxin 17 475059 1 1 1 1 0 0 1 0 0 0 0.22 0.96 -3999 DPP7 dipeptidyl-peptidase 7 271752 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -4000 C11orf84 526773 1 1 1 1 0 1 0 0 0 0 0.22 0.96 -4001 NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 374673 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -4002 ABCB8 ATP-binding cassette, sub-family B (MDR/TAP), member 8 1073319 2 2 2 0 0 2 0 0 0 0 0.22 0.96 -4003 SYAP1 synapse associated protein 1, SAP47 homolog (Drosophila) 464412 1 1 1 2 0 0 1 0 0 0 0.22 0.96 -4004 KIAA0430 KIAA0430 2692170 4 4 4 2 0 2 0 0 2 0 0.22 0.96 -4005 BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) 958737 2 2 2 0 0 0 1 1 0 0 0.22 0.96 -4006 THAP1 THAP domain containing, apoptosis associated protein 1 331578 1 1 1 0 0 0 0 1 0 0 0.22 0.96 -4007 C2orf65 chromosome 2 open reading frame 65 819819 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -4008 C6orf118 chromosome 6 open reading frame 118 703716 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -4009 HOOK3 hook homolog 3 (Drosophila) 1107288 2 2 2 0 0 0 1 0 1 0 0.22 0.96 -4010 EEF2K eukaryotic elongation factor-2 kinase 1118949 2 2 2 1 0 0 2 0 0 0 0.22 0.96 -4011 HOMEZ homeobox and leucine zipper encoding 819819 2 1 2 0 0 0 0 0 0 2 0.22 0.96 -4012 ERN1 endoplasmic reticulum to nucleus signaling 1 1316679 2 2 2 0 0 1 0 0 1 0 0.22 0.96 -4013 TRIM13 tripartite motif-containing 13 625638 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -4014 RNF20 ring finger protein 20 1523028 3 3 3 1 0 2 1 0 0 0 0.22 0.96 -4015 WBSCR27 Williams Beuren syndrome chromosome region 27 348309 1 1 1 0 1 0 0 0 0 0 0.22 0.96 -4016 LONP1 lon peptidase 1, mitochondrial 836550 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -4017 PASD1 PAS domain containing 1 1166100 2 2 2 1 0 1 1 0 0 0 0.22 0.96 -4018 ACAD10 acyl-Coenzyme A dehydrogenase family, member 10 1608204 3 3 3 0 1 2 0 0 0 0 0.22 0.96 -4019 TRPM3 transient receptor potential cation channel, subfamily M, member 3 2710929 4 4 4 0 0 1 1 1 1 0 0.22 0.96 -4020 PTDSS2 phosphatidylserine synthase 2 336648 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -4021 RRP1 ribosomal RNA processing 1 homolog (S. cerevisiae) 471003 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -4022 CTSF cathepsin F 541476 1 1 1 2 0 1 0 0 0 0 0.22 0.96 -4023 DUXA double homeobox A 323973 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -4024 HIF1AN hypoxia-inducible factor 1, alpha subunit inhibitor 481650 1 1 1 1 0 0 1 0 0 0 0.22 0.96 -4025 HFE hemochromatosis 539955 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -4026 FCGR1B Fc fragment of IgG, high affinity Ib, receptor (CD64) 384813 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -4027 CTH cystathionase (cystathionine gamma-lyase) 641862 1 1 1 0 0 0 0 0 1 0 0.22 0.96 -4028 RNF135 ring finger protein 135 478101 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -4029 PRMT10 1257867 2 2 2 1 0 0 0 0 2 0 0.22 0.96 -4030 ING4 inhibitor of growth family, member 4 396474 1 1 1 0 0 1 0 0 0 0 0.22 0.96 -4031 SGK196 537927 1 1 1 0 0 0 1 0 0 0 0.22 0.96 -4032 ETF1 eukaryotic translation termination factor 1 640848 1 1 1 0 0 0 0 0 1 0 0.23 0.96 -4033 DPP10 dipeptidyl-peptidase 10 1264965 2 2 2 1 0 1 1 0 0 0 0.23 0.96 -4034 RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 496353 1 1 1 0 0 0 1 0 0 0 0.23 0.96 -4035 RAB39B RAB39B, member RAS oncogene family 329550 1 1 1 0 1 0 0 0 0 0 0.23 0.96 -4036 TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) 511563 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4037 IL15 interleukin 15 260091 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4038 RANBP3 RAN binding protein 3 591162 1 1 1 1 0 0 0 1 0 0 0.23 0.97 -4039 RANGAP1 Ran GTPase activating protein 1 781794 2 2 2 0 1 0 0 1 0 0 0.23 0.97 -4040 ZNF561 zinc finger protein 561 689013 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4041 AJAP1 adherens junctions associated protein 1 428415 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4042 ARID4A AT rich interactive domain 4A (RBP1-like) 1960062 3 3 3 0 0 0 1 2 0 0 0.23 0.97 -4043 KRI1 KRI1 homolog (S. cerevisiae) 1020084 2 2 2 2 0 2 0 0 0 0 0.23 0.97 -4044 SLC35B4 solute carrier family 35, member B4 484185 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4045 FNDC1 fibronectin type III domain containing 1 2222181 4 4 4 1 1 2 1 0 0 0 0.23 0.97 -4046 MCHR2 melanin-concentrating hormone receptor 2 528801 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4047 NEK8 NIMA (never in mitosis gene a)- related kinase 8 1023126 2 2 2 0 0 1 1 0 0 0 0.23 0.97 -4048 BMP8B bone morphogenetic protein 8b (osteogenic protein 2) 279864 1 1 1 1 0 0 0 1 0 0 0.23 0.97 -4049 TNNC2 troponin C type 2 (fast) 257049 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4050 IL25 interleukin 25 281385 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4051 IDS iduronate 2-sulfatase (Hunter syndrome) 820326 2 2 2 1 0 2 0 0 0 0 0.23 0.97 -4052 FCAR Fc fragment of IgA, receptor for 484185 1 1 1 1 0 1 0 0 0 0 0.23 0.97 -4053 POFUT1 protein O-fucosyltransferase 1 564798 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4054 PPAPDC3 phosphatidic acid phosphatase type 2 domain containing 3 334113 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4055 PDIA4 protein disulfide isomerase family A, member 4 956202 2 2 2 0 0 1 0 0 1 0 0.23 0.97 -4056 BNC1 basonuclin 1 1471314 3 3 3 1 2 1 0 0 0 0 0.23 0.97 -4057 DNM3 dynamin 3 1273077 2 2 2 0 1 1 0 0 0 0 0.23 0.97 -4058 ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 1188408 2 2 2 0 0 1 1 0 0 0 0.23 0.97 -4059 OR10G7 olfactory receptor, family 10, subfamily G, member 7 476580 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4060 MYPN myopalladin 2047773 3 3 3 1 0 0 0 1 2 0 0.23 0.97 -4061 METAP2 methionyl aminopeptidase 2 750867 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4062 ZNF611 zinc finger protein 611 1079910 2 2 2 0 0 0 2 0 0 0 0.23 0.97 -4063 PRDM16 PR domain containing 16 1331382 2 2 2 0 1 1 0 0 0 0 0.23 0.97 -4064 TBCEL tubulin folding cofactor E-like 660621 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4065 SMC6 structural maintenance of chromosomes 6 1713660 3 3 3 0 1 0 0 0 2 0 0.23 0.97 -4066 WNT3A wingless-type MMTV integration site family, member 3A 221052 1 1 1 1 1 0 0 0 0 0 0.23 0.97 -4067 DPY19L3 dpy-19-like 3 (C. elegans) 1127061 2 2 2 0 1 0 0 1 0 0 0.23 0.97 -4068 SLC35F1 solute carrier family 35, member F1 548574 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4069 CDK6 cyclin-dependent kinase 6 391404 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4070 NAPA N-ethylmaleimide-sensitive factor attachment protein, alpha 456300 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4071 TFAP4 transcription factor AP-4 (activating enhancer binding protein 4) 400530 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4072 CELA3B 426894 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4073 SEMG2 semenogelin II 890799 2 2 2 0 1 0 0 1 0 0 0.23 0.97 -4074 GLRA2 glycine receptor, alpha 2 743769 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4075 NARS2 asparaginyl-tRNA synthetase 2, mitochondrial (putative) 755430 1 1 1 1 0 0 0 1 0 0 0.23 0.97 -4076 NLK nemo-like kinase 685464 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4077 KIAA1274 KIAA1274 1092585 2 2 2 0 0 2 0 0 0 0 0.23 0.97 -4078 WDR67 WD repeat domain 67 1626456 2 2 2 2 1 0 0 0 1 0 0.23 0.97 -4079 THOC1 THO complex 1 941499 2 2 2 0 0 2 0 0 0 0 0.23 0.97 -4080 SOCS4 suppressor of cytokine signaling 4 672789 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4081 GATAD2B GATA zinc finger domain containing 2B 923754 2 2 2 0 0 1 1 0 0 0 0.23 0.97 -4082 LGI2 leucine-rich repeat LGI family, member 2 744783 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4083 KCTD21 potassium channel tetramerisation domain containing 21 399009 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4084 MYLK myosin light chain kinase 2895984 5 5 5 3 1 3 0 1 0 0 0.23 0.97 -4085 LRTM1 leucine-rich repeats and transmembrane domains 1 532350 1 1 1 1 0 1 0 0 0 0 0.23 0.97 -4086 ZDHHC4 zinc finger, DHHC-type containing 4 536913 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4087 SETX senataxin 4121910 6 6 6 0 0 1 2 1 2 0 0.23 0.97 -4088 OR2J3 olfactory receptor, family 2, subfamily J, member 3 476580 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4089 AIM1L absent in melanoma 1-like 746811 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4090 ADCY1 adenylate cyclase 1 (brain) 1489059 3 3 3 0 2 0 1 0 0 0 0.23 0.97 -4091 C5orf45 459342 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4092 PRPF19 PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) 730587 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4093 EPB49 erythrocyte membrane protein band 4.9 (dematin) 497874 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4094 TFB1M transcription factor B1, mitochondrial 536406 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4095 CACNG2 calcium channel, voltage-dependent, gamma subunit 2 469482 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4096 PI4KA phosphatidylinositol 4-kinase, catalytic, alpha 2449824 3 3 3 1 0 0 1 1 1 0 0.23 0.97 -4097 CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 711828 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4098 OR4S1 olfactory receptor, family 4, subfamily S, member 1 473538 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4099 L2HGDH L-2-hydroxyglutarate dehydrogenase 653016 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4100 IMMT inner membrane protein, mitochondrial (mitofilin) 1159509 2 2 2 0 1 0 1 0 0 0 0.23 0.97 -4101 RIMKLA 521703 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4102 KIAA0226 KIAA0226 1485510 3 3 3 0 1 0 1 1 0 0 0.23 0.97 -4103 B3GNT8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 414219 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4104 AKAP14 A kinase (PRKA) anchor protein 14 315861 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4105 RSPH1 radial spoke head 1 homolog (Chlamydomonas) 465426 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4106 HOXA1 homeobox A1 515112 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4107 STOM stomatin 420810 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4108 R3HDML R3H domain containing-like 396474 1 1 1 1 1 0 0 0 0 0 0.23 0.97 -4109 RERG RAS-like, estrogen-regulated, growth inhibitor 312312 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4110 HNF1B HNF1 homeobox B 591162 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4111 KIFAP3 kinesin-associated protein 3 1228461 2 2 2 0 0 1 0 0 1 0 0.23 0.97 -4112 TSG101 tumor susceptibility gene 101 591669 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4113 C17orf74 chromosome 17 open reading frame 74 769626 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4114 PRR4 proline rich 4 (lacrimal) 267696 1 1 1 0 0 0 0 1 0 0 0.23 0.97 -4115 OC90 otoconin 90 692562 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4116 FMO4 flavin containing monooxygenase 4 866463 2 2 2 0 0 1 1 0 0 0 0.23 0.97 -4117 ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 1008423 2 2 2 0 2 0 0 0 0 0 0.23 0.97 -4118 SSTR3 somatostatin receptor 3 238797 1 1 1 1 0 1 0 0 0 0 0.23 0.97 -4119 TOMM40L translocase of outer mitochondrial membrane 40 homolog (yeast)-like 488241 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4120 LYPD6 LY6/PLAUR domain containing 6 269724 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4121 IFRD1 interferon-related developmental regulator 1 692562 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4122 DHX30 DEAH (Asp-Glu-Ala-His) box polypeptide 30 1825707 3 3 3 0 0 0 1 0 2 0 0.23 0.97 -4123 C9orf106 chromosome 9 open reading frame 106 244374 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4124 SLC1A6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 861393 1 1 1 1 0 0 1 0 0 0 0.23 0.97 -4125 C3orf75 420303 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4126 CADPS2 Ca2+-dependent activator protein for secretion 2 1798329 3 3 3 0 0 1 1 1 0 0 0.23 0.97 -4127 LARGE like-glycosyltransferase 1163058 2 2 2 0 0 2 0 0 0 0 0.23 0.97 -4128 STMN4 stathmin-like 4 342225 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4129 ATP5F1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 405093 1 1 1 1 0 0 0 1 0 0 0.23 0.97 -4130 FREM1 FRAS1 related extracellular matrix 1 3366987 5 5 5 1 2 1 2 0 0 0 0.23 0.97 -4131 CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila) 2708394 4 4 4 2 1 2 0 0 1 0 0.23 0.97 -4132 CPA2 carboxypeptidase A2 (pancreatic) 661128 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4133 MOGS 1101204 2 2 2 0 0 0 2 0 0 0 0.23 0.97 -4134 DCLK1 doublecortin-like kinase 1 1089543 2 2 2 3 2 0 0 0 0 0 0.23 0.97 -4135 LXN latexin 351351 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4136 XCR1 chemokine (C motif) receptor 1 483678 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4137 CTSL2 cathepsin L2 523731 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4138 B3GNT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 519168 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4139 ATP6V0B ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 293553 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4140 ZNF594 zinc finger protein 594 1230996 2 2 2 1 0 0 1 0 1 0 0.23 0.97 -4141 WDR65 WD repeat domain 65 1083459 2 2 2 0 0 1 1 0 0 0 0.23 0.97 -4142 MTMR9 myotubularin related protein 9 766584 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4143 MYL12B 269217 1 1 1 0 0 1 0 0 0 0 0.23 0.97 -4144 HSPA14 heat shock 70kDa protein 14 773175 2 2 2 0 1 0 0 1 0 0 0.23 0.97 -4145 FBXL3 F-box and leucine-rich repeat protein 3 660621 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4146 DUSP7 dual specificity phosphatase 7 380757 1 1 1 0 0 0 1 0 0 0 0.23 0.97 -4147 TAAR1 trace amine associated receptor 1 519168 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4148 GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 494325 1 1 1 0 1 0 0 0 0 0 0.23 0.97 -4149 RPS6KL1 ribosomal protein S6 kinase-like 1 767091 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4150 NAA20 266175 1 1 1 1 0 0 1 0 0 0 0.23 0.97 -4151 ARHGEF9 Cdc42 guanine nucleotide exchange factor (GEF) 9 806637 2 2 2 0 1 1 0 0 0 0 0.23 0.97 -4152 UCP3 uncoupling protein 3 (mitochondrial, proton carrier) 486213 1 1 1 1 1 0 0 0 0 0 0.23 0.97 -4153 UHRF1 ubiquitin-like, containing PHD and RING finger domains, 1 942006 2 2 2 1 0 1 0 1 0 0 0.23 0.97 -4154 MSH3 mutS homolog 3 (E. coli) 1657383 2 2 2 1 1 0 0 0 1 0 0.23 0.97 -4155 ITLN2 intelectin 2 511563 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4156 RAB11A RAB11A, member RAS oncogene family 340197 1 1 1 0 0 0 0 0 1 0 0.23 0.97 -4157 ATRN attractin 2023944 3 3 3 0 1 1 1 0 0 0 0.23 0.97 -4158 CEP135 centrosomal protein 135kDa 1784133 2 2 2 0 0 0 0 1 1 0 0.23 0.97 -4159 TM9SF1 transmembrane 9 superfamily member 1 955188 2 2 2 0 0 1 1 0 0 0 0.23 0.97 -4160 GPR20 G protein-coupled receptor 20 240825 1 1 1 0 0 1 0 0 0 0 0.23 0.98 -4161 GPR125 G protein-coupled receptor 125 1916967 3 3 3 2 0 2 1 0 0 0 0.23 0.98 -4162 ICMT isoprenylcysteine carboxyl methyltransferase 342732 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4163 LHFPL1 lipoma HMGIC fusion partner-like 1 342225 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4164 DIDO1 death inducer-obliterator 1 2011269 3 3 3 1 0 1 1 0 1 0 0.24 0.98 -4165 ELP3 elongation protein 3 homolog (S. cerevisiae) 852267 1 1 1 1 0 0 0 0 1 0 0.24 0.98 -4166 KIAA1432 KIAA1432 2133963 5 4 5 1 1 2 2 0 0 0 0.24 0.98 -4167 KCNJ3 potassium inwardly-rectifying channel, subfamily J, member 3 769626 1 1 1 0 0 0 0 0 1 0 0.24 0.98 -4168 FAF2 666705 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4169 L1TD1 LINE-1 type transposase domain containing 1 862914 2 2 2 1 0 1 1 0 0 0 0.24 0.98 -4170 ERCC5 excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome)) 1789203 3 3 3 0 0 0 3 0 0 0 0.24 0.98 -4171 NMT2 N-myristoyltransferase 2 725517 1 1 1 0 0 0 0 0 1 0 0.24 0.98 -4172 LILRA5 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 514098 1 1 1 1 0 0 1 0 0 0 0.24 0.98 -4173 ZNF516 zinc finger protein 516 635271 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4174 MYST4 MYST histone acetyltransferase (monocytic leukemia) 4 3187002 5 5 5 2 2 1 2 0 0 0 0.24 0.98 -4175 AXIN1 axin 1 585078 1 1 1 1 0 0 0 1 0 0 0.24 0.98 -4176 REEP1 receptor accessory protein 1 242346 1 1 1 0 1 0 0 0 0 0 0.24 0.98 -4177 GHR growth hormone receptor 990171 2 2 2 0 0 1 1 0 0 0 0.24 0.98 -4178 OR6C1 olfactory receptor, family 6, subfamily C, member 1 478101 1 1 1 1 1 0 0 0 0 0 0.24 0.98 -4179 PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 780780 1 1 1 0 0 0 0 1 0 0 0.24 0.98 -4180 DAB1 disabled homolog 1 (Drosophila) 872040 2 2 2 0 0 1 0 0 1 0 0.24 0.98 -4181 SAMD9 sterile alpha motif domain containing 9 2420418 4 4 4 1 2 1 1 0 0 0 0.24 0.98 -4182 ZNF808 zinc finger protein 808 1381068 2 2 2 0 0 0 1 0 1 0 0.24 0.98 -4183 DUSP6 dual specificity phosphatase 6 374673 1 1 1 2 0 1 0 0 0 0 0.24 0.98 -4184 COPG coatomer protein complex, subunit gamma 1358760 2 2 2 0 0 0 1 0 1 0 0.24 0.98 -4185 ROPN1B ropporin, rhophilin associated protein 1B 334113 1 1 1 1 1 0 0 0 0 0 0.24 0.98 -4186 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 1676649 3 3 3 1 1 2 0 0 0 0 0.24 0.98 -4187 PARP8 poly (ADP-ribose) polymerase family, member 8 1353183 2 2 2 1 0 0 1 0 1 0 0.24 0.98 -4188 SERINC5 serine incorporator 5 634257 1 1 1 0 0 0 0 1 0 0 0.24 0.98 -4189 SLC1A7 solute carrier family 1 (glutamate transporter), member 7 484692 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4190 GLYAT glycine-N-acyltransferase 463905 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4191 NUPL1 nucleoporin like 1 888771 2 2 2 1 0 2 0 0 0 0 0.24 0.98 -4192 CAMK1G calcium/calmodulin-dependent protein kinase IG 747825 1 1 1 1 0 0 1 0 0 0 0.24 0.98 -4193 ZCCHC17 zinc finger, CCHC domain containing 17 382278 1 1 1 0 0 0 0 0 1 0 0.24 0.98 -4194 STEAP2 six transmembrane epithelial antigen of the prostate 2 773175 1 1 1 1 0 0 0 0 1 0 0.24 0.98 -4195 NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) 756444 1 1 1 0 0 0 0 0 1 0 0.24 0.98 -4196 GOLGA1 golgi autoantigen, golgin subfamily a, 1 1132638 2 2 2 2 0 0 1 1 0 0 0.24 0.98 -4197 ACTL7B actin-like 7B 633750 1 1 1 1 0 0 0 0 1 0 0.24 0.98 -4198 YAP1 Yes-associated protein 1, 65kDa 690534 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4199 PTPLAD1 protein tyrosine phosphatase-like A domain containing 1 528294 1 1 1 0 0 0 0 0 1 0 0.24 0.98 -4200 PPAN peter pan homolog (Drosophila) 460356 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4201 ADAMTSL2 ADAMTS-like 2 437034 1 1 1 0 1 0 0 0 0 0 0.24 0.98 -4202 DMPK dystrophia myotonica-protein kinase 697632 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4203 KIR2DS4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4 361491 1 1 1 1 0 0 0 1 0 0 0.24 0.98 -4204 CCND1 cyclin D1 251979 1 1 1 0 1 0 0 0 0 0 0.24 0.98 -4205 ZNF606 zinc finger protein 606 1218321 2 2 2 0 0 0 2 0 0 0 0.24 0.98 -4206 SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 866463 2 2 2 0 1 1 0 0 0 0 0.24 0.98 -4207 GRAMD1C GRAM domain containing 1C 1029210 2 2 2 0 0 1 1 0 0 0 0.24 0.98 -4208 MRPL40 mitochondrial ribosomal protein L40 291525 1 1 1 0 0 0 0 1 0 0 0.24 0.98 -4209 LRIG3 leucine-rich repeats and immunoglobulin-like domains 3 1620372 3 3 3 0 0 1 2 0 0 0 0.24 0.98 -4210 MPP2 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) 787371 1 1 1 0 0 0 0 0 1 0 0.24 0.98 -4211 PREP prolyl endopeptidase 1087008 2 2 2 0 0 1 0 1 0 0 0.24 0.98 -4212 KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 1506297 3 3 3 0 0 2 1 0 0 0 0.24 0.98 -4213 OR5K2 olfactory receptor, family 5, subfamily K, member 2 484185 1 1 1 1 1 0 0 0 0 0 0.24 0.98 -4214 ADHFE1 alcohol dehydrogenase, iron containing, 1 708279 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4215 CGRRF1 cell growth regulator with ring finger domain 1 518661 1 1 1 0 1 0 0 0 0 0 0.24 0.98 -4216 TRPC1 transient receptor potential cation channel, subfamily C, member 1 1130610 2 2 2 0 0 1 1 0 0 0 0.24 0.98 -4217 IGFBP3 insulin-like growth factor binding protein 3 245895 1 1 1 0 0 1 0 0 0 0 0.24 0.98 -4218 NF2 neurofibromin 2 (merlin) 722982 1 1 1 0 0 0 0 0 1 0 0.24 0.98 -4219 ITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) 1652820 3 3 3 1 0 1 1 0 1 0 0.24 0.98 -4220 HTR1F 5-hydroxytryptamine (serotonin) receptor 1F 560235 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4221 DCDC2B doublecortin domain containing 2B 474045 1 1 1 1 0 0 0 1 0 0 0.24 0.98 -4222 CKLF chemokine-like factor 247416 1 1 1 0 1 0 0 0 0 0 0.24 0.98 -4223 NACA2 nascent polypeptide-associated complex alpha subunit 2 330564 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4224 PRR21 316368 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4225 ZNF483 zinc finger protein 483 1170663 2 2 2 1 0 0 1 1 0 0 0.24 0.98 -4226 MTERFD3 MTERF domain containing 3 589134 1 1 1 1 0 1 0 0 0 0 0.24 0.98 -4227 CNKSR1 connector enhancer of kinase suppressor of Ras 1 941499 2 2 2 3 0 1 0 1 0 0 0.24 0.98 -4228 DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 742755 1 1 1 0 1 0 0 0 0 0 0.24 0.98 -4229 FGF6 fibroblast growth factor 6 323973 1 1 1 1 0 1 0 0 0 0 0.24 0.98 -4230 EIF5 eukaryotic translation initiation factor 5 677352 1 1 1 0 1 0 0 0 0 0 0.24 0.98 -4231 POLA1 polymerase (DNA directed), alpha 1 2285556 4 4 4 1 1 2 0 0 1 0 0.24 0.98 -4232 OR4K13 olfactory receptor, family 4, subfamily K, member 13 465933 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4233 NELL2 NEL-like 2 (chicken) 1327326 2 2 2 1 0 1 0 0 1 0 0.24 0.98 -4234 UGT3A1 UDP glycosyltransferase 3 family, polypeptide A1 811200 2 2 2 0 0 2 0 0 0 0 0.24 0.98 -4235 XIAP X-linked inhibitor of apoptosis 769626 1 1 1 2 0 1 0 0 0 0 0.24 0.98 -4236 GPR160 G protein-coupled receptor 160 517647 1 1 1 1 1 0 0 0 0 0 0.24 0.98 -4237 RSAD2 radical S-adenosyl methionine domain containing 2 562770 1 1 1 0 0 0 1 0 0 0 0.24 0.98 -4238 CALCR calcitonin receptor 786357 1 1 1 0 0 0 0 0 1 0 0.24 0.99 -4239 MPPED2 metallophosphoesterase domain containing 2 497367 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4240 EHHADH enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase 1115400 2 2 2 1 0 0 2 0 0 0 0.24 0.99 -4241 IL28RA interleukin 28 receptor, alpha (interferon, lambda receptor) 700674 1 1 1 1 0 0 0 0 1 0 0.24 0.99 -4242 ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 2003157 3 3 3 4 0 1 1 1 0 0 0.24 0.99 -4243 OR51E2 olfactory receptor, family 51, subfamily E, member 2 490269 1 1 1 0 0 0 1 0 0 0 0.24 0.99 -4244 PDLIM4 PDZ and LIM domain 4 467454 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4245 PEX10 peroxisome biogenesis factor 10 237276 1 1 1 0 1 0 0 0 0 0 0.24 0.99 -4246 MTA3 metastasis associated 1 family, member 3 765063 1 1 1 1 0 0 1 0 0 0 0.24 0.99 -4247 DMP1 dentin matrix acidic phosphoprotein 791934 1 1 1 0 0 0 0 0 1 0 0.24 0.99 -4248 SH2B1 SH2B adaptor protein 1 1014000 2 2 2 0 1 0 0 1 0 0 0.24 0.99 -4249 TRYX3 378222 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4250 ELN elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) 1060644 2 2 2 1 0 1 0 1 0 0 0.24 0.99 -4251 IQCA1 1032252 2 2 2 0 0 2 0 0 0 0 0.24 0.99 -4252 PARD6B par-6 partitioning defective 6 homolog beta (C. elegans) 537927 1 1 1 0 0 0 0 1 0 0 0.24 0.99 -4253 ZNF554 zinc finger protein 554 801060 2 2 2 0 2 0 0 0 0 0 0.24 0.99 -4254 IQCG IQ motif containing G 695604 1 1 1 2 0 0 1 0 0 0 0.24 0.99 -4255 RTN1 reticulon 1 769119 1 1 1 0 0 0 0 0 1 0 0.24 0.99 -4256 FAM83H family with sequence similarity 83, member H 493311 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4257 LRRC7 leucine rich repeat containing 7 2389998 4 4 4 2 1 1 1 1 0 0 0.24 0.99 -4258 PCDHGA9 protocadherin gamma subfamily A, 9 1459146 2 2 2 1 0 0 0 0 2 0 0.24 0.99 -4259 SC4MOL sterol-C4-methyl oxidase-like 457314 1 1 1 0 0 0 1 0 0 0 0.24 0.99 -4260 SCYL1 SCY1-like 1 (S. cerevisiae) 796497 1 1 1 0 0 0 0 0 1 0 0.24 0.99 -4261 DCAF4L1 600288 1 1 1 0 1 0 0 0 0 0 0.24 0.99 -4262 PCDHAC1 protocadherin alpha subfamily C, 1 1403376 2 2 2 1 0 0 1 0 1 0 0.24 0.99 -4263 FAM129C family with sequence similarity 129, member C 840099 2 2 2 1 1 0 0 1 0 0 0.24 0.99 -4264 C19orf59 chromosome 19 open reading frame 59 263640 1 1 1 0 0 0 1 0 0 0 0.24 0.99 -4265 MRC2 mannose receptor, C type 2 1308060 2 2 2 1 0 0 1 0 1 0 0.24 0.99 -4266 METT5D1 methyltransferase 5 domain containing 1 426894 1 1 1 0 0 0 1 0 0 0 0.24 0.99 -4267 CYP4Z1 cytochrome P450, family 4, subfamily Z, polypeptide 1 769119 1 1 1 0 0 0 0 1 0 0 0.24 0.99 -4268 GCC2 GRIP and coiled-coil domain containing 2 2604459 4 4 4 0 0 2 1 0 1 0 0.24 0.99 -4269 UGT2B10 UDP glucuronosyltransferase 2 family, polypeptide B10 816777 2 2 2 0 1 0 1 0 0 0 0.24 0.99 -4270 NOTCH3 Notch homolog 3 (Drosophila) 1917981 3 3 3 2 1 0 1 0 1 0 0.24 0.99 -4271 CCDC80 coiled-coil domain containing 80 1460667 3 3 3 0 0 2 1 0 0 0 0.24 0.99 -4272 LENG9 leukocyte receptor cluster (LRC) member 9 438555 1 1 1 0 0 0 1 0 0 0 0.24 0.99 -4273 CCNB3 cyclin B3 2145624 3 3 3 1 0 1 0 0 2 0 0.24 0.99 -4274 PRKRA protein kinase, interferon-inducible double stranded RNA dependent activator 492804 1 1 1 0 1 0 0 0 0 0 0.24 0.99 -4275 NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 281892 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4276 C18orf54 chromosome 18 open reading frame 54 581529 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4277 GCC1 GRIP and coiled-coil domain containing 1 1184352 2 2 2 0 1 0 0 0 1 0 0.24 0.99 -4278 CYP8B1 cytochrome P450, family 8, subfamily B, polypeptide 1 765570 1 1 1 0 0 0 0 0 1 0 0.24 0.99 -4279 ATAD2B ATPase family, AAA domain containing 2B 2094924 3 3 3 0 1 0 0 1 1 0 0.24 0.99 -4280 ANKH ankylosis, progressive homolog (mouse) 705744 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4281 ZNF513 zinc finger protein 513 712842 1 1 1 0 0 1 0 0 0 0 0.24 0.99 -4282 MRPL13 mitochondrial ribosomal protein L13 286455 1 1 1 0 0 0 1 0 0 0 0.24 0.99 -4283 KIAA1012 KIAA1012 2100501 2 2 2 0 0 0 0 0 2 0 0.24 0.99 -4284 KDM4D 799032 1 1 1 0 0 0 0 0 1 0 0.25 0.99 -4285 OVCH1 ovochymase 1 1707576 2 2 2 1 0 0 1 0 1 0 0.25 0.99 -4286 RNF121 ring finger protein 121 459849 1 1 1 0 0 0 0 1 0 0 0.25 0.99 -4287 ZNF365 zinc finger protein 365 1090557 2 2 2 0 1 0 1 0 0 0 0.25 0.99 -4288 BRD8 bromodomain containing 8 2080221 3 3 3 0 0 2 0 0 1 0 0.25 0.99 -4289 TNN tenascin N 1844973 3 3 3 0 2 0 1 0 0 0 0.25 0.99 -4290 ADORA1 adenosine A1 receptor 501423 1 1 1 1 0 1 0 0 0 0 0.25 0.99 -4291 MC4R melanocortin 4 receptor 508521 1 1 1 1 0 0 1 0 0 0 0.25 0.99 -4292 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 888771 1 1 1 2 0 0 0 0 1 0 0.25 0.99 -4293 TNFRSF8 tumor necrosis factor receptor superfamily, member 8 674817 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4294 GCDH glutaryl-Coenzyme A dehydrogenase 692055 1 1 1 0 0 0 0 1 0 0 0.25 0.99 -4295 ILVBL ilvB (bacterial acetolactate synthase)-like 920712 2 2 2 0 2 0 0 0 0 0 0.25 0.99 -4296 TCEAL5 transcription elongation factor A (SII)-like 5 316875 1 1 1 0 1 0 0 0 0 0 0.25 0.99 -4297 METTL10 methyltransferase like 10 267189 1 1 1 0 1 0 0 0 0 0 0.25 0.99 -4298 TNS1 tensin 1 2666820 4 4 4 0 1 1 1 0 1 0 0.25 0.99 -4299 SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 2512185 4 4 4 1 3 1 0 0 0 0 0.25 0.99 -4300 EFHC2 EF-hand domain (C-terminal) containing 2 990678 2 2 2 0 1 0 1 0 0 0 0.25 0.99 -4301 PLAC1L placenta-specific 1-like 249951 1 1 1 1 0 1 0 0 0 0 0.25 0.99 -4302 STK40 serine/threonine kinase 40 677859 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4303 TFCP2 transcription factor CP2 795483 1 1 1 0 0 0 0 0 1 0 0.25 0.99 -4304 GOLPH3 golgi phosphoprotein 3 (coat-protein) 346788 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4305 ZNF181 zinc finger protein 181 808158 2 2 2 0 1 0 1 0 0 0 0.25 0.99 -4306 WDR52 WD repeat domain 52 1535703 3 3 3 0 1 1 1 0 0 0 0.25 0.99 -4307 CDH2 cadherin 2, type 1, N-cadherin (neuronal) 480129 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4308 C20orf160 chromosome 20 open reading frame 160 393432 1 1 1 0 1 0 0 0 0 0 0.25 0.99 -4309 RASIP1 Ras interacting protein 1 695097 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4310 ARCN1 archain 1 795483 1 1 1 1 0 0 0 0 1 0 0.25 0.99 -4311 GMIP GEM interacting protein 885222 2 2 2 0 1 1 0 0 0 0 0.25 0.99 -4312 VSIG10 799032 1 1 1 0 0 0 0 0 1 0 0.25 0.99 -4313 ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 1374984 2 2 2 1 0 0 1 1 0 0 0.25 0.99 -4314 ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide 1596036 3 3 3 0 2 1 0 0 0 0 0.25 0.99 -4315 GUCY1A2 guanylate cyclase 1, soluble, alpha 2 975468 2 2 2 0 0 2 0 0 0 0 0.25 0.99 -4316 SFMBT2 Scm-like with four mbt domains 2 1265979 2 2 2 1 0 0 0 2 0 0 0.25 0.99 -4317 LRRC4B leucine rich repeat containing 4B 442104 1 1 1 1 1 0 0 0 0 0 0.25 0.99 -4318 CDH8 cadherin 8, type 2 1239108 2 2 2 1 0 0 0 2 0 0 0.25 0.99 -4319 HIATL1 hippocampus abundant transcript-like 1 738699 1 1 1 0 0 0 0 1 0 0 0.25 0.99 -4320 MTUS2 1928628 3 3 3 3 1 2 0 0 0 0 0.25 0.99 -4321 DNAJB7 DnaJ (Hsp40) homolog, subfamily B, member 7 473538 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4322 MAP3K12 mitogen-activated protein kinase kinase kinase 12 1336452 2 2 2 0 0 0 0 0 2 0 0.25 0.99 -4323 DNAJC14 DnaJ (Hsp40) homolog, subfamily C, member 14 1081431 2 2 2 1 0 1 1 0 0 0 0.25 0.99 -4324 GALNTL5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 691548 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4325 MAGEC2 melanoma antigen family C, 2 570882 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4326 B3GALT5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 475059 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4327 BRS3 bombesin-like receptor 3 614484 1 1 1 1 0 1 0 0 0 0 0.25 0.99 -4328 COL4A1 collagen, type IV, alpha 1 2520804 4 4 4 2 2 1 0 0 1 0 0.25 0.99 -4329 RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4 510042 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4330 SPATA9 spermatogenesis associated 9 397995 1 1 1 0 1 0 0 0 0 0 0.25 0.99 -4331 SH3BP4 SH3-domain binding protein 4 1376505 2 2 2 1 1 0 0 0 1 0 0.25 0.99 -4332 ARID2 AT rich interactive domain 2 (ARID, RFX-like) 2736786 3 3 3 0 0 1 0 0 2 0 0.25 0.99 -4333 RPS6KA3 ribosomal protein S6 kinase, 90kDa, polypeptide 3 1134666 2 2 2 0 1 0 1 0 0 0 0.25 0.99 -4334 CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 299637 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4335 RGS9 regulator of G-protein signaling 9 1093092 2 2 2 0 1 1 0 0 0 0 0.25 0.99 -4336 ATP11A ATPase, class VI, type 11A 1835847 3 3 3 0 0 2 0 0 1 0 0.25 0.99 -4337 TLE3 transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) 963300 2 2 2 0 0 0 0 2 0 0 0.25 0.99 -4338 PDHB pyruvate dehydrogenase (lipoamide) beta 515112 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4339 STRN4 striatin, calmodulin binding protein 4 952653 2 2 2 1 0 1 0 0 1 0 0.25 0.99 -4340 C1orf129 chromosome 1 open reading frame 129 901446 1 1 1 1 0 0 0 0 1 0 0.25 0.99 -4341 AGPHD1 576966 1 1 1 0 0 0 0 1 0 0 0.25 0.99 -4342 RABGGTA Rab geranylgeranyltransferase, alpha subunit 884208 2 2 2 0 1 0 1 0 0 0 0.25 0.99 -4343 TRPC5 transient receptor potential cation channel, subfamily C, member 5 1501734 3 3 3 2 1 2 0 0 0 0 0.25 0.99 -4344 BCL6B B-cell CLL/lymphoma 6, member B (zinc finger protein) 667212 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4345 PTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) 543504 1 1 1 0 0 0 0 0 1 0 0.25 0.99 -4346 MTPAP 903474 1 1 1 0 0 0 0 0 1 0 0.25 0.99 -4347 SCAMP3 secretory carrier membrane protein 3 547560 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4348 OR1I1 olfactory receptor, family 1, subfamily I, member 1 543504 1 1 1 0 1 0 0 0 0 0 0.25 0.99 -4349 PNMAL1 PNMA-like 1 684450 1 1 1 0 0 0 0 0 1 0 0.25 0.99 -4350 SIN3B SIN3 homolog B, transcription regulator (yeast) 1377519 2 2 2 1 0 1 0 0 1 0 0.25 0.99 -4351 MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase 505479 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4352 SIT1 signaling threshold regulating transmembrane adaptor 1 265161 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4353 TICAM1 toll-like receptor adaptor molecule 1 948597 2 2 2 0 0 0 1 0 1 0 0.25 0.99 -4354 C3orf35 chromosome 3 open reading frame 35 281385 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4355 FERMT3 fermitin family homolog 3 (Drosophila) 819819 2 2 2 1 1 1 0 0 0 0 0.25 0.99 -4356 CASP1 caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase) 634257 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4357 CDCP1 CUB domain containing protein 1 1251783 3 2 3 1 1 0 0 0 0 2 0.25 0.99 -4358 LRRC14B 328029 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4359 NEK9 NIMA (never in mitosis gene a)- related kinase 9 1422135 2 2 2 2 1 0 0 0 1 0 0.25 0.99 -4360 LRP5L low density lipoprotein receptor-related protein 5-like 392925 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4361 ITPKC inositol 1,4,5-trisphosphate 3-kinase C 862407 2 2 2 1 0 0 1 1 0 0 0.25 0.99 -4362 ASB18 ankyrin repeat and SOCS box-containing 18 322452 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4363 KCND2 potassium voltage-gated channel, Shal-related subfamily, member 2 971919 2 2 2 1 1 1 0 0 0 0 0.25 0.99 -4364 ZNF786 zinc finger protein 786 848211 2 2 2 1 1 0 0 1 0 0 0.25 0.99 -4365 MAN2A1 mannosidase, alpha, class 2A, member 1 1715688 3 3 3 1 1 0 2 0 0 0 0.25 0.99 -4366 RNASE9 ribonuclease, RNase A family, 9 (non-active) 322452 1 1 1 0 0 0 0 0 1 0 0.25 0.99 -4367 IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 647439 1 1 1 0 0 0 1 0 0 0 0.25 0.99 -4368 IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta 1101204 2 2 2 0 0 2 0 0 0 0 0.25 0.99 -4369 LDLRAD3 low density lipoprotein receptor class A domain containing 3 513084 1 1 1 0 0 1 0 0 0 0 0.25 0.99 -4370 HEATR1 HEAT repeat containing 1 3351777 5 5 5 0 1 0 2 1 1 0 0.25 0.99 -4371 RBM34 RNA binding motif protein 34 688506 1 1 1 0 0 0 0 0 1 0 0.25 1.00 -4372 ZNF71 zinc finger protein 71 747318 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4373 POTEE 1300962 2 2 2 0 1 1 0 0 0 0 0.25 1.00 -4374 FIP1L1 FIP1 like 1 (S. cerevisiae) 912093 1 1 1 0 0 0 0 0 1 0 0.25 1.00 -4375 POLH polymerase (DNA directed), eta 1106274 2 2 2 1 0 0 1 0 1 0 0.25 1.00 -4376 CLIC2 chloride intracellular channel 2 389376 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4377 C9orf98 chromosome 9 open reading frame 98 599274 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4378 SLC39A13 solute carrier family 39 (zinc transporter), member 13 549588 1 1 1 2 0 0 0 1 0 0 0.25 1.00 -4379 KCNG1 potassium voltage-gated channel, subfamily G, member 1 565812 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4380 DYNC1I1 dynein, cytoplasmic 1, intermediate chain 1 1015014 2 2 2 0 1 1 0 0 0 0 0.25 1.00 -4381 C18orf34 chromosome 18 open reading frame 34 1349127 2 2 2 0 0 1 1 0 0 0 0.25 1.00 -4382 VIPAR 789906 1 1 1 0 0 0 0 0 1 0 0.25 1.00 -4383 FAM114A1 family with sequence similarity 114, member A1 884208 2 2 2 0 0 2 0 0 0 0 0.25 1.00 -4384 IGF1 insulin-like growth factor 1 (somatomedin C) 348309 1 1 1 0 0 0 1 0 0 0 0.25 1.00 -4385 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 1161030 2 2 2 0 0 1 0 0 1 0 0.25 1.00 -4386 FAM71C family with sequence similarity 71, member C 372138 1 1 1 0 1 0 0 0 0 0 0.25 1.00 -4387 B3GAT3 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) 521196 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4388 LRWD1 leucine-rich repeats and WD repeat domain containing 1 571896 1 1 1 1 0 1 0 0 0 0 0.25 1.00 -4389 SERPIND1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 768612 1 1 1 0 0 0 0 1 0 0 0.25 1.00 -4390 USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) 1269528 2 2 2 0 0 0 1 0 1 0 0.25 1.00 -4391 NME6 non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) 298116 1 1 1 0 0 0 1 0 0 0 0.25 1.00 -4392 KLRC3 killer cell lectin-like receptor subfamily C, member 3 327522 1 1 1 0 0 0 1 0 0 0 0.25 1.00 -4393 BTN2A1 butyrophilin, subfamily 2, member A1 830973 2 2 2 0 0 1 0 1 0 0 0.25 1.00 -4394 PTGFR prostaglandin F receptor (FP) 589641 1 1 1 0 0 0 1 0 0 0 0.25 1.00 -4395 NPAT nuclear protein, ataxia-telangiectasia locus 2208492 5 4 5 0 1 1 1 1 1 0 0.25 1.00 -4396 SH3PXD2B SH3 and PX domains 2B 1372956 2 2 2 0 0 1 1 0 0 0 0.25 1.00 -4397 SNX8 sorting nexin 8 445653 1 1 1 1 0 0 1 0 0 0 0.25 1.00 -4398 SLC7A4 solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 692562 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4399 LIPE lipase, hormone-sensitive 1471314 2 2 2 0 0 1 0 1 0 0 0.25 1.00 -4400 KRT72 keratin 72 656565 1 1 1 1 0 1 0 0 0 0 0.25 1.00 -4401 KRT14 keratin 14 (epidermolysis bullosa simplex, Dowling-Meara, Koebner) 576459 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4402 OR5T2 olfactory receptor, family 5, subfamily T, member 2 549588 1 1 1 1 0 1 0 0 0 0 0.25 1.00 -4403 MTMR14 myotubularin related protein 14 929838 1 1 1 0 0 0 0 0 1 0 0.25 1.00 -4404 MAGEB6 melanoma antigen family B, 6 622596 1 1 1 0 0 0 0 1 0 0 0.25 1.00 -4405 DUSP26 dual specificity phosphatase 26 (putative) 328536 1 1 1 0 0 0 1 0 0 0 0.25 1.00 -4406 CILP cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 1818609 3 3 3 0 1 1 1 0 0 0 0.25 1.00 -4407 GBP2 guanylate binding protein 2, interferon-inducible 920712 1 1 1 0 0 0 0 0 1 0 0.25 1.00 -4408 DYDC1 DPY30 domain containing 1 282906 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4409 RBBP5 retinoblastoma binding protein 5 803595 1 1 1 0 0 0 0 0 1 0 0.25 1.00 -4410 SDCBP2 syndecan binding protein (syntenin) 2 284427 1 1 1 0 0 0 1 0 0 0 0.25 1.00 -4411 CELA1 366054 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4412 TMEM189 transmembrane protein 189 360984 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4413 CD300A CD300a molecule 447681 1 1 1 0 0 1 0 0 0 0 0.25 1.00 -4414 AHCTF1 AT hook containing transcription factor 1 3522636 5 5 5 0 1 0 1 1 2 0 0.25 1.00 -4415 TBC1D25 TBC1 domain family, member 25 995748 2 2 2 0 0 0 1 1 0 0 0.26 1.00 -4416 DNHD1 dynein heavy chain domain 1 2387970 4 4 4 3 2 2 0 0 0 0 0.26 1.00 -4417 OR5M11 olfactory receptor, family 5, subfamily M, member 11 467454 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4418 EFNB1 ephrin-B1 471003 1 1 1 1 0 1 0 0 0 0 0.26 1.00 -4419 RELA v-rel reticuloendotheliosis viral oncogene homolog A, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3, p65 (avian) 777231 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4420 CAV1 caveolin 1, caveolae protein, 22kDa 278343 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4421 PNKP polynucleotide kinase 3'-phosphatase 684450 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4422 REP15 362505 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4423 HEPACAM2 746304 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4424 KLHL15 kelch-like 15 (Drosophila) 924261 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4425 PPARG peroxisome proliferator-activated receptor gamma 783822 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4426 C20orf185 chromosome 20 open reading frame 185 751374 1 1 1 2 0 0 1 0 0 0 0.26 1.00 -4427 IL22 interleukin 22 283920 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4428 ITGB5 integrin, beta 5 1209702 2 2 2 2 0 0 1 1 0 0 0.26 1.00 -4429 GPR172A G protein-coupled receptor 172A 643383 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4430 QRICH2 glutamine rich 2 2388477 4 4 4 0 1 2 0 1 0 0 0.26 1.00 -4431 LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 989664 2 2 2 0 0 1 0 1 0 0 0.26 1.00 -4432 ZNF563 zinc finger protein 563 733629 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4433 SLC20A1 solute carrier family 20 (phosphate transporter), member 1 1054560 2 2 2 0 1 0 1 0 0 0 0.26 1.00 -4434 SLC9A7 solute carrier family 9 (sodium/hydrogen exchanger), member 7 1041378 2 2 2 0 1 1 0 0 0 0 0.26 1.00 -4435 ATP13A1 ATPase type 13A1 879645 2 2 2 1 1 0 0 0 1 0 0.26 1.00 -4436 PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) 310791 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4437 RAB2B RAB2B, member RAS oncogene family 346281 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4438 CLEC17A 465426 1 1 1 1 1 0 0 0 0 0 0.26 1.00 -4439 NTNG2 netrin G2 614484 1 1 1 3 0 1 0 0 0 0 0.26 1.00 -4440 ZNF239 zinc finger protein 239 700167 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4441 ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 1631019 3 3 3 1 1 2 0 0 0 0 0.26 1.00 -4442 MORC1 MORC family CW-type zinc finger 1 1519986 3 3 3 0 1 0 2 0 0 0 0.26 1.00 -4443 TREML1 triggering receptor expressed on myeloid cells-like 1 486720 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4444 STAC2 SH3 and cysteine rich domain 2 401544 1 1 1 1 0 0 1 0 0 0 0.26 1.00 -4445 RG9MTD2 RNA (guanine-9-) methyltransferase domain containing 2 531336 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4446 FMN1 formin 1 1804920 3 3 3 1 1 1 1 0 0 0 0.26 1.00 -4447 NOSTRIN nitric oxide synthase trafficker 817284 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4448 CTSA cathepsin A 735150 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4449 CDO1 cysteine dioxygenase, type I 315861 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4450 PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 2105571 3 3 3 0 0 0 1 1 1 0 0.26 1.00 -4451 PDK4 pyruvate dehydrogenase kinase, isozyme 4 609414 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4452 MMAA methylmalonic aciduria (cobalamin deficiency) cblA type 649467 1 1 1 0 0 0 0 1 0 0 0.26 1.00 -4453 VCAN versican 5195229 7 7 7 0 0 0 2 2 3 0 0.26 1.00 -4454 TRIM24 tripartite motif-containing 24 1464723 2 2 2 1 0 0 1 0 1 0 0.26 1.00 -4455 MID2 midline 2 1135680 2 2 2 0 0 0 1 0 1 0 0.26 1.00 -4456 KCNU1 potassium channel, subfamily U, member 1 1803399 3 3 3 1 1 1 1 0 0 0 0.26 1.00 -4457 NUDT17 nudix (nucleoside diphosphate linked moiety X)-type motif 17 339183 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4458 IL2RG interleukin 2 receptor, gamma (severe combined immunodeficiency) 578994 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4459 MKL1 megakaryoblastic leukemia (translocation) 1 835029 1 1 1 1 0 0 0 0 1 0 0.26 1.00 -4460 TPCN1 two pore segment channel 1 1252290 2 2 2 0 0 2 0 0 0 0 0.26 1.00 -4461 EPHA1 EPH receptor A1 1436838 2 2 2 0 1 0 1 0 0 0 0.26 1.00 -4462 CPXCR1 CPX chromosome region, candidate 1 461370 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4463 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 1651806 3 3 3 0 1 1 1 0 0 0 0.26 1.00 -4464 CACNA1A calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 3037944 5 5 5 3 2 3 0 0 0 0 0.26 1.00 -4465 SLC17A8 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 921726 2 2 2 0 0 1 0 0 1 0 0.26 1.00 -4466 TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa 1225926 2 2 2 0 1 0 1 0 0 0 0.26 1.00 -4467 PDGFRA platelet-derived growth factor receptor, alpha polypeptide 1702506 3 3 3 1 2 0 1 0 0 0 0.26 1.00 -4468 IRF2BP1 interferon regulatory factor 2 binding protein 1 277329 1 1 1 1 0 1 0 0 0 0 0.26 1.00 -4469 DCHS2 dachsous 2 (Drosophila) 4366791 6 6 6 0 2 2 1 0 1 0 0.26 1.00 -4470 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 359970 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4471 DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila) 2080728 3 3 3 0 1 0 0 0 2 0 0.26 1.00 -4472 XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) 952146 2 2 2 0 0 0 1 1 0 0 0.26 1.00 -4473 TM4SF1 transmembrane 4 L six family member 1 318903 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4474 AKTIP AKT interacting protein 463905 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4475 COL1A2 collagen, type I, alpha 2 2013297 3 3 3 1 0 1 2 0 0 0 0.26 1.00 -4476 CARM1 coactivator-associated arginine methyltransferase 1 799032 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4477 ZNF713 zinc finger protein 713 663663 1 1 1 0 0 0 0 1 0 0 0.26 1.00 -4478 FHDC1 FH2 domain containing 1 1447992 2 2 2 1 0 0 0 1 1 0 0.26 1.00 -4479 DDX5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 937443 1 1 1 1 0 0 0 0 1 0 0.26 1.00 -4480 MESDC2 mesoderm development candidate 2 323973 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4481 GFRA3 GDNF family receptor alpha 3 566319 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4482 SHPK sedoheptulokinase 671775 1 1 1 1 0 0 0 1 0 0 0.26 1.00 -4483 XRRA1 X-ray radiation resistance associated 1 1182324 2 2 2 1 0 1 1 0 0 0 0.26 1.00 -4484 OR4D2 olfactory receptor, family 4, subfamily D, member 2 470496 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4485 SLC13A3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 844662 2 2 2 0 1 1 0 0 0 0 0.26 1.00 -4486 ANUBL1 AN1, ubiquitin-like, homolog (Xenopus laevis) 1125540 2 2 2 1 0 1 0 1 0 0 0.26 1.00 -4487 BHMT2 betaine-homocysteine methyltransferase 2 551109 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4488 NID2 nidogen 2 (osteonidogen) 2130414 3 3 3 0 1 1 0 0 1 0 0.26 1.00 -4489 P2RY1 purinergic receptor P2Y, G-protein coupled, 1 536406 1 1 1 1 1 0 0 0 0 0 0.26 1.00 -4490 IFI44 interferon-induced protein 44 693069 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4491 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 944541 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4492 TAS2R1 taste receptor, type 2, member 1 458328 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4493 TNFRSF10D tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain 528801 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4494 PPP2R5B protein phosphatase 2, regulatory subunit B', beta isoform 603837 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4495 TAS2R14 taste receptor, type 2, member 14 485706 1 1 1 0 0 0 0 1 0 0 0.26 1.00 -4496 ATG7 ATG7 autophagy related 7 homolog (S. cerevisiae) 1107288 2 2 2 0 0 1 1 0 0 0 0.26 1.00 -4497 FRMD7 FERM domain containing 7 1111851 2 2 2 0 0 1 0 0 1 0 0.26 1.00 -4498 FLT4 fms-related tyrosine kinase 4 628173 1 1 1 1 0 0 1 0 0 0 0.26 1.00 -4499 CA4 carbonic anhydrase IV 460863 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4500 TPST2 tyrosylprotein sulfotransferase 2 444132 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4501 PARP10 poly (ADP-ribose) polymerase family, member 10 1146834 2 2 2 0 0 0 1 0 1 0 0.26 1.00 -4502 ZNF366 zinc finger protein 366 1121484 2 2 2 0 1 1 0 0 0 0 0.26 1.00 -4503 CNR1 cannabinoid receptor 1 (brain) 721461 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4504 ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I 743769 3 1 3 1 0 0 0 0 0 3 0.26 1.00 -4505 KIRREL kin of IRRE like (Drosophila) 978510 2 2 2 1 1 1 0 0 0 0 0.26 1.00 -4506 GRB2 growth factor receptor-bound protein 2 341718 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4507 ADRA1A adrenergic, alpha-1A-, receptor 522210 1 1 1 1 0 1 0 0 0 0 0.26 1.00 -4508 C6orf138 chromosome 6 open reading frame 138 1235559 2 2 2 1 1 0 1 0 0 0 0.26 1.00 -4509 DHPS deoxyhypusine synthase 581022 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4510 FAR1 807144 2 1 2 0 0 0 0 0 0 2 0.26 1.00 -4511 TRPM2 transient receptor potential cation channel, subfamily M, member 2 860886 2 2 2 2 2 0 0 0 0 0 0.26 1.00 -4512 GGT1 gamma-glutamyltransferase 1 763542 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4513 SLC10A6 solute carrier family 10 (sodium/bile acid cotransporter family), member 6 587106 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4514 GYG2 glycogenin 2 660114 1 1 1 0 0 0 0 1 0 0 0.26 1.00 -4515 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta 381264 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4516 OR3A3 olfactory receptor, family 3, subfamily A, member 3 490776 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4517 PHC3 polyhomeotic homolog 3 (Drosophila) 1545336 3 3 3 0 0 0 1 1 1 0 0.26 1.00 -4518 VIL1 villin 1 1297920 2 2 2 0 1 1 0 0 0 0 0.26 1.00 -4519 IFNA4 interferon, alpha 4 291018 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4520 AWAT2 522210 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4521 TOX2 TOX high mobility group box family member 2 771147 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4522 TRAK2 trafficking protein, kinesin binding 2 1422135 2 2 2 1 0 0 1 0 1 0 0.26 1.00 -4523 TFPT TCF3 (E2A) fusion partner (in childhood Leukemia) 398502 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4524 ACTA2 actin, alpha 2, smooth muscle, aorta 591162 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4525 SLC6A7 solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 972933 2 2 2 0 0 1 1 0 0 0 0.26 1.00 -4526 SFXN5 sideroflexin 5 413205 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4527 RAVER1 ribonucleoprotein, PTB-binding 1 662649 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4528 CASR calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism) 1668537 3 3 3 0 2 1 0 0 0 0 0.26 1.00 -4529 NFE2 nuclear factor (erythroid-derived 2), 45kDa 572910 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4530 SNX31 sorting nexin 31 663663 1 1 1 0 0 0 0 1 0 0 0.26 1.00 -4531 AFTPH aftiphilin 1444950 2 2 2 0 1 0 1 0 0 0 0.26 1.00 -4532 STEAP3 STEAP family member 3 754923 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4533 TECPR2 2084277 3 3 3 0 0 1 1 0 1 0 0.26 1.00 -4534 IFNA14 interferon, alpha 14 291018 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4535 TFIP11 tuftelin interacting protein 11 1294878 2 2 2 0 1 1 0 0 0 0 0.26 1.00 -4536 FOXP4 forkhead box P4 786357 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4537 NANP N-acetylneuraminic acid phosphatase 335127 1 1 1 0 0 0 1 0 0 0 0.26 1.00 -4538 ASB1 ankyrin repeat and SOCS box-containing 1 456807 1 1 1 1 1 0 0 0 0 0 0.26 1.00 -4539 PCDHA1 protocadherin alpha 1 1442922 2 2 2 2 0 1 1 0 0 0 0.26 1.00 -4540 DHX58 DEXH (Asp-Glu-X-His) box polypeptide 58 932880 2 2 2 0 2 0 0 0 0 0 0.26 1.00 -4541 TWISTNB TWIST neighbor 501930 1 1 1 0 0 1 0 0 0 0 0.26 1.00 -4542 PCDH12 protocadherin 12 1801371 3 3 3 0 0 2 1 0 0 0 0.26 1.00 -4543 TGM6 transglutaminase 6 1096134 2 2 2 0 1 1 0 0 0 0 0.26 1.00 -4544 COPG2 coatomer protein complex, subunit gamma 2 547560 1 1 1 2 0 0 1 0 0 0 0.26 1.00 -4545 SGEF 1230489 2 2 2 1 1 1 0 0 0 0 0.26 1.00 -4546 LOX lysyl oxidase 353379 1 1 1 0 1 0 0 0 0 0 0.26 1.00 -4547 RARA retinoic acid receptor, alpha 653016 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4548 OBSL1 obscurin-like 1 1932684 3 3 3 3 0 1 1 0 1 0 0.26 1.00 -4549 HPD 4-hydroxyphenylpyruvate dioxygenase 627666 1 1 1 2 0 0 0 0 1 0 0.26 1.00 -4550 DGAT2L6 diacylglycerol O-acyltransferase 2-like 6 528294 1 1 1 1 0 0 1 0 0 0 0.26 1.00 -4551 BARX2 BARX homeobox 2 433992 1 1 1 0 0 0 0 0 1 0 0.26 1.00 -4552 MAPK14 mitogen-activated protein kinase 14 641355 1 1 1 1 0 1 0 0 0 0 0.26 1.00 -4553 TRHDE thyrotropin-releasing hormone degrading enzyme 1384110 2 2 2 0 0 0 1 1 0 0 0.27 1.00 -4554 DHCR24 24-dehydrocholesterol reductase 750867 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4555 MTIF2 mitochondrial translational initiation factor 2 1133652 2 2 2 0 1 0 0 0 1 0 0.27 1.00 -4556 AMBP alpha-1-microglobulin/bikunin precursor 557193 1 1 1 1 0 0 1 0 0 0 0.27 1.00 -4557 RCBTB2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 863928 2 2 2 1 1 0 1 0 0 0 0.27 1.00 -4558 GOLGA5 golgi autoantigen, golgin subfamily a, 5 1137708 2 2 2 0 1 0 1 0 0 0 0.27 1.00 -4559 XKR9 XK, Kell blood group complex subunit-related family, member 9 574938 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4560 TM2D1 TM2 domain containing 1 290004 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4561 TCN1 transcobalamin I (vitamin B12 binding protein, R binder family) 678366 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4562 HSPA12A heat shock 70kDa protein 12A 919698 2 2 2 0 1 1 0 0 0 0 0.27 1.00 -4563 KIAA1024 KIAA1024 1400841 2 2 2 1 1 0 1 0 0 0 0.27 1.00 -4564 SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 494832 1 1 1 1 1 0 0 0 0 0 0.27 1.00 -4565 RBBP6 retinoblastoma binding protein 6 2766699 4 4 4 0 0 0 2 2 0 0 0.27 1.00 -4566 GSTA1 glutathione S-transferase A1 351351 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4567 KIAA1257 KIAA1257 614991 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4568 TAS2R13 taste receptor, type 2, member 13 464412 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4569 C20orf70 chromosome 20 open reading frame 70 394446 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4570 ITM2A integral membrane protein 2A 355407 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4571 PLD3 phospholipase D family, member 3 658086 1 1 1 1 0 1 0 0 0 0 0.27 1.00 -4572 TCF21 transcription factor 21 277836 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4573 DPYSL4 dihydropyrimidinase-like 4 507507 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4574 NPFFR2 neuropeptide FF receptor 2 680394 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4575 ACSL6 acyl-CoA synthetase long-chain family member 6 1156974 2 2 2 0 1 1 0 0 0 0 0.27 1.00 -4576 STIP1 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) 849225 2 2 2 0 1 0 0 1 0 0 0.27 1.00 -4577 BAI3 brain-specific angiogenesis inhibitor 3 2377323 3 3 3 1 0 1 1 0 1 0 0.27 1.00 -4578 IL22RA2 interleukin 22 receptor, alpha 2 413712 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4579 MAST4 microtubule associated serine/threonine kinase family member 4 3298542 5 5 5 0 0 3 0 2 0 0 0.27 1.00 -4580 OMD osteomodulin 645918 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4581 MYO18B myosin XVIIIB 3110445 5 5 5 2 3 2 0 0 0 0 0.27 1.00 -4582 RAG1 recombination activating gene 1 1589952 3 3 3 0 0 2 1 0 0 0 0.27 1.00 -4583 SCD5 stearoyl-CoA desaturase 5 498381 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4584 CPVL carboxypeptidase, vitellogenic-like 749853 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4585 OR6M1 olfactory receptor, family 6, subfamily M, member 1 479622 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4586 RENBP renin binding protein 503451 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4587 GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) 628680 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4588 CDHR3 1385631 2 2 2 0 0 0 0 1 1 0 0.27 1.00 -4589 RPS2 ribosomal protein S2 267189 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4590 WDR46 WD repeat domain 46 939978 2 2 2 1 0 1 1 0 0 0 0.27 1.00 -4591 SLC35A1 solute carrier family 35 (CMP-sialic acid transporter), member A1 520182 1 1 1 1 0 0 1 0 0 0 0.27 1.00 -4592 RNF128 ring finger protein 128 723489 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4593 BPI bactericidal/permeability-increasing protein 772668 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4594 CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 618033 1 1 1 0 0 0 0 1 0 0 0.27 1.00 -4595 CELA3A 417261 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4596 GALNTL1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 788892 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4597 FKBP8 FK506 binding protein 8, 38kDa 571389 1 1 1 1 0 0 1 0 0 0 0.27 1.00 -4598 KIAA1539 KIAA1539 782301 1 1 1 0 0 0 0 1 0 0 0.27 1.00 -4599 CPT1C carnitine palmitoyltransferase 1C 1133145 2 2 2 0 2 0 0 0 0 0 0.27 1.00 -4600 BAZ1A bromodomain adjacent to zinc finger domain, 1A 2361606 4 4 4 0 1 1 2 0 0 0 0.27 1.00 -4601 FAM149A family with sequence similarity 149, member A 756951 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4602 RASGRP4 RAS guanyl releasing protein 4 793962 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4603 SAT2 spermidine/spermine N1-acetyltransferase family member 2 272259 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4604 PWWP2A PWWP domain containing 2A 685971 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4605 APOF apolipoprotein F 501423 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4606 AKR1C3 aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) 511056 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4607 RGS22 regulator of G-protein signaling 22 1964118 3 3 3 1 1 0 1 0 1 0 0.27 1.00 -4608 SPATA22 spermatogenesis associated 22 566826 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4609 PAX2 paired box 2 709293 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4610 FBF1 Fas (TNFRSF6) binding factor 1 527280 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4611 FBXW12 F-box and WD repeat domain containing 12 727545 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4612 WNT10B wingless-type MMTV integration site family, member 10B 551616 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4613 POTEG 676338 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4614 LONP2 lon peptidase 2, peroxisomal 1207674 2 2 2 0 0 1 1 0 0 0 0.27 1.00 -4615 PTPLAD2 protein tyrosine phosphatase-like A domain containing 2 347295 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4616 MAPKAP1 mitogen-activated protein kinase associated protein 1 826917 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4617 PDHX pyruvate dehydrogenase complex, component X 702702 1 1 1 0 0 0 0 1 0 0 0.27 1.00 -4618 ITGA1 integrin, alpha 1 1820637 3 3 3 1 0 2 1 0 0 0 0.27 1.00 -4619 MRGPRD MAS-related GPR, member D 475566 1 1 1 1 0 1 0 0 0 0 0.27 1.00 -4620 ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 512070 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4621 CRYM crystallin, mu 407121 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4622 VWF von Willebrand factor 4189341 6 6 5 2 0 4 2 0 0 0 0.27 1.00 -4623 CALCRL calcitonin receptor-like 727038 1 1 1 0 0 0 0 1 0 0 0.27 1.00 -4624 C1QTNF6 C1q and tumor necrosis factor related protein 6 331578 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4625 DOK3 docking protein 3 516633 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4626 GALT galactose-1-phosphate uridylyltransferase 600288 1 1 1 0 0 0 0 1 0 0 0.27 1.00 -4627 OPCML opioid binding protein/cell adhesion molecule-like 573417 1 1 1 0 0 0 0 1 0 0 0.27 1.00 -4628 OR10C1 olfactory receptor, family 10, subfamily C, member 1 478101 1 1 1 1 0 1 0 0 0 0 0.27 1.00 -4629 ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 757458 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4630 MAGEB2 melanoma antigen family B, 2 488748 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4631 ZC3H12A zinc finger CCCH-type containing 12A 865449 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4632 DCAF8L1 916149 2 2 2 0 1 1 0 0 0 0 0.27 1.00 -4633 PPARA peroxisome proliferator-activated receptor alpha 723996 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4634 DNMBP dynamin binding protein 2432586 4 4 4 1 1 2 1 0 0 0 0.27 1.00 -4635 AP1B1 adaptor-related protein complex 1, beta 1 subunit 1274091 2 2 2 1 1 0 1 0 0 0 0.27 1.00 -4636 TMPRSS6 transmembrane protease, serine 6 636792 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4637 RIMS3 regulating synaptic membrane exocytosis 3 482157 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4638 C14orf102 chromosome 14 open reading frame 102 1780077 3 3 3 1 1 1 1 0 0 0 0.27 1.00 -4639 POGZ pogo transposable element with ZNF domain 2189733 3 3 3 0 0 0 2 1 0 0 0.27 1.00 -4640 C10orf2 chromosome 10 open reading frame 2 1059630 2 2 2 1 0 2 0 0 0 0 0.27 1.00 -4641 TMCO7 transmembrane and coiled-coil domains 7 1360281 2 2 2 0 0 0 0 0 2 0 0.27 1.00 -4642 PLEK2 pleckstrin 2 533364 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4643 ZNF587 zinc finger protein 587 863421 2 2 2 0 1 0 1 0 0 0 0.27 1.00 -4644 CECR5 cat eye syndrome chromosome region, candidate 5 615498 1 1 1 1 0 0 1 0 0 0 0.27 1.00 -4645 IFT74 intraflagellar transport 74 homolog (Chlamydomonas) 987636 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4646 SEPT12 septin 12 472017 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4647 IRGC immunity-related GTPase family, cinema 652002 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4648 HSD17B1 hydroxysteroid (17-beta) dehydrogenase 1 363519 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4649 SPATA13 spermatogenesis associated 13 1066221 2 2 2 0 0 1 1 0 0 0 0.27 1.00 -4650 TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa 915135 2 2 2 0 0 2 0 0 0 0 0.27 1.00 -4651 SGCA sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) 512577 1 1 1 1 0 1 0 0 0 0 0.27 1.00 -4652 C10orf18 chromosome 10 open reading frame 18 3734055 6 6 6 0 1 0 3 0 2 0 0.27 1.00 -4653 SLC23A1 solute carrier family 23 (nucleobase transporters), member 1 883701 2 2 2 0 0 1 1 0 0 0 0.27 1.00 -4654 ESD esterase D/formylglutathione hydrolase 446667 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4655 SPNS1 spinster homolog 1 (Drosophila) 775203 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4656 NSMAF neutral sphingomyelinase (N-SMase) activation associated factor 1427205 2 2 1 0 0 0 2 0 0 0 0.27 1.00 -4657 WFS1 Wolfram syndrome 1 (wolframin) 672282 1 1 1 2 0 1 0 0 0 0 0.27 1.00 -4658 GLYATL2 glycine-N-acyltransferase-like 2 458835 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4659 ZNF699 zinc finger protein 699 988143 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4660 ACOX1 acyl-Coenzyme A oxidase 1, palmitoyl 1093092 2 2 2 0 0 0 1 1 0 0 0.27 1.00 -4661 HOXD3 homeobox D3 560235 1 1 1 2 0 0 1 0 0 0 0.27 1.00 -4662 OR5D16 olfactory receptor, family 5, subfamily D, member 16 502437 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4663 FRRS1 ferric-chelate reductase 1 984087 2 2 2 1 1 0 0 0 1 0 0.27 1.00 -4664 NKD1 naked cuticle homolog 1 (Drosophila) 466440 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4665 COMMD4 COMM domain containing 4 316875 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4666 TNFAIP8L2 tumor necrosis factor, alpha-induced protein 8-like 2 283413 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4667 SEPHS1 selenophosphate synthetase 1 613977 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4668 ITIH4 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 1414023 2 2 2 0 0 1 0 0 1 0 0.27 1.00 -4669 RPRD1B 511563 1 1 1 0 1 0 0 0 0 0 0.27 1.00 -4670 PRKCSH protein kinase C substrate 80K-H 742248 1 1 1 0 0 0 0 0 1 0 0.27 1.00 -4671 LBR lamin B receptor 963300 2 2 2 1 1 1 0 0 0 0 0.27 1.00 -4672 OR51D1 olfactory receptor, family 51, subfamily D, member 1 496353 1 1 1 1 0 1 0 0 0 0 0.27 1.00 -4673 PLCE1 phospholipase C, epsilon 1 3710733 5 5 5 1 1 2 0 0 2 0 0.27 1.00 -4674 INADL InaD-like (Drosophila) 2826018 5 4 5 0 1 0 2 0 2 0 0.27 1.00 -4675 ARR3 arrestin 3, retinal (X-arrestin) 615498 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4676 COG5 component of oligomeric golgi complex 5 1320228 2 2 2 0 1 0 1 0 0 0 0.27 1.00 -4677 SUN5 514098 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4678 LZIC leucine zipper and CTNNBIP1 domain containing 302679 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4679 RBM12B RNA binding motif protein 12B 1526070 2 2 2 0 0 0 1 0 1 0 0.27 1.00 -4680 ADPRHL2 ADP-ribosylhydrolase like 2 456807 1 1 1 0 0 1 0 0 0 0 0.27 1.00 -4681 RET ret proto-oncogene 1485510 2 2 2 0 1 0 1 0 0 0 0.27 1.00 -4682 CERCAM cerebral endothelial cell adhesion molecule 798525 1 1 1 1 0 1 0 0 0 0 0.27 1.00 -4683 GPR64 G protein-coupled receptor 64 1603134 3 3 3 1 1 2 0 0 0 0 0.27 1.00 -4684 MYO6 myosin VI 2024958 3 3 3 0 0 0 1 1 1 0 0.27 1.00 -4685 HAS1 hyaluronan synthase 1 513084 1 1 1 0 0 0 1 0 0 0 0.27 1.00 -4686 ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif, 19 1617330 3 3 3 0 1 1 1 0 0 0 0.27 1.00 -4687 CLEC1A C-type lectin domain family 1, member A 439569 1 1 1 0 0 0 0 1 0 0 0.27 1.00 -4688 KIAA1804 1187394 2 2 2 2 0 1 1 0 0 0 0.27 1.00 -4689 MYO16 myosin XVI 2366169 4 4 4 0 0 3 0 0 1 0 0.28 1.00 -4690 SHROOM4 shroom family member 4 2261727 3 3 3 3 0 0 1 0 2 0 0.28 1.00 -4691 DCAF12 667212 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4692 TRPC6 transient receptor potential cation channel, subfamily C, member 6 1355718 2 2 2 2 1 0 0 0 1 0 0.28 1.00 -4693 TCTN1 tectonic family member 1 816777 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4694 CPSF1 cleavage and polyadenylation specific factor 1, 160kDa 1064700 2 2 2 1 1 1 0 0 0 0 0.28 1.00 -4695 UNC45A unc-45 homolog A (C. elegans) 1305018 2 2 2 0 1 1 0 0 0 0 0.28 1.00 -4696 LAMP2 lysosomal-associated membrane protein 2 790920 1 1 1 2 0 0 0 0 1 0 0.28 1.00 -4697 SPG20 spastic paraplegia 20 (Troyer syndrome) 1030731 2 2 2 0 0 0 2 0 0 0 0.28 1.00 -4698 MARCH4 membrane-associated ring finger (C3HC4) 4 455793 1 1 1 1 0 0 0 0 1 0 0.28 1.00 -4699 FAM118B family with sequence similarity 118, member B 549588 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4700 C8orf34 chromosome 8 open reading frame 34 677352 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4701 AMIGO1 adhesion molecule with Ig-like domain 1 720954 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4702 TMC8 transmembrane channel-like 8 730080 1 1 1 1 0 1 0 0 0 0 0.28 1.00 -4703 MMP26 matrix metallopeptidase 26 410670 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4704 SLC15A4 solute carrier family 15, member 4 616512 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4705 ZNF683 zinc finger protein 683 710307 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4706 C1orf135 chromosome 1 open reading frame 135 509028 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4707 ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 1438866 2 2 2 0 0 1 0 1 0 0 0.28 1.00 -4708 PGAP1 post-GPI attachment to proteins 1 1458639 2 2 2 1 0 1 1 0 0 0 0.28 1.00 -4709 ZNF283 zinc finger protein 283 978510 2 2 2 0 0 1 0 0 1 0 0.28 1.00 -4710 ARPC1A actin related protein 2/3 complex, subunit 1A, 41kDa 560742 1 1 1 2 0 0 1 0 0 0 0.28 1.00 -4711 PAK1 p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast) 885729 2 2 2 0 1 0 0 1 0 0 0.28 1.00 -4712 ZNF292 zinc finger protein 292 4038762 4 4 4 0 0 0 1 0 3 0 0.28 1.00 -4713 PMF1 polyamine-modulated factor 1 323466 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4714 ERO1LB ERO1-like beta (S. cerevisiae) 690534 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4715 TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa 475566 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4716 TIGD6 tigger transposable element derived 6 795483 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4717 F2RL2 coagulation factor II (thrombin) receptor-like 2 574431 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4718 VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 567333 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4719 GPATCH8 G patch domain containing 8 2273895 4 4 4 1 1 1 1 1 0 0 0.28 1.00 -4720 CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 984087 2 2 2 2 0 1 0 1 0 0 0.28 1.00 -4721 SEMA5B sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B 1398306 2 2 2 0 1 0 1 0 0 0 0.28 1.00 -4722 MSRB3 methionine sulfoxide reductase B3 295074 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4723 TSEN54 tRNA splicing endonuclease 54 homolog (S. cerevisiae) 380250 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4724 RPL18 ribosomal protein L18 297609 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4725 GHRHR growth hormone releasing hormone receptor 576966 1 1 1 0 0 0 0 1 0 0 0.28 1.00 -4726 TRIB3 tribbles homolog 3 (Drosophila) 418782 1 1 1 2 0 0 1 0 0 0 0.28 1.00 -4727 C2orf62 chromosome 2 open reading frame 62 535899 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4728 C1orf89 chromosome 1 open reading frame 89 344253 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4729 AHCYL2 S-adenosylhomocysteine hydrolase-like 2 810186 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4730 C2orf47 chromosome 2 open reading frame 47 414726 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4731 TOR1AIP1 torsin A interacting protein 1 799032 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4732 GRM6 glutamate receptor, metabotropic 6 806130 1 1 1 2 1 0 0 0 0 0 0.28 1.00 -4733 ROPN1L ropporin 1-like 361491 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4734 HTR3A 5-hydroxytryptamine (serotonin) receptor 3A 802581 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4735 WISP3 WNT1 inducible signaling pathway protein 3 577473 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4736 IL17RE interleukin 17 receptor E 764049 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4737 MRGPRX3 MAS-related GPR, member X3 493311 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4738 C10orf46 chromosome 10 open reading frame 46 435513 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4739 TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 662649 1 1 1 0 0 0 0 1 0 0 0.28 1.00 -4740 KCTD1 potassium channel tetramerisation domain containing 1 408135 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4741 OR2AG2 olfactory receptor, family 2, subfamily AG, member 2 484185 1 1 1 1 1 0 0 0 0 0 0.28 1.00 -4742 COQ10B coenzyme Q10 homolog B (S. cerevisiae) 318903 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4743 TSSC1 tumor suppressing subtransferable candidate 1 340197 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4744 ZFAND1 zinc finger, AN1-type domain 1 419796 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4745 GAD1 glutamate decarboxylase 1 (brain, 67kDa) 957723 2 2 2 0 1 0 1 0 0 0 0.28 1.00 -4746 HMGCS1 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) 810693 1 1 1 1 0 0 1 0 0 0 0.28 1.00 -4747 FUS fusion (involved in t(12;16) in malignant liposarcoma) 804609 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4748 ISLR2 immunoglobulin superfamily containing leucine-rich repeat 2 1067235 1 1 1 1 0 0 0 0 1 0 0.28 1.00 -4749 ARMC6 armadillo repeat containing 6 690534 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4750 CIITA class II, major histocompatibility complex, transactivator 1757769 3 3 3 0 1 0 2 0 0 0 0.28 1.00 -4751 RANBP3L RAN binding protein 3-like 737178 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4752 RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 356928 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4753 PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 1851057 3 3 3 0 0 2 1 0 0 0 0.28 1.00 -4754 NR1H4 nuclear receptor subfamily 1, group H, member 4 737685 1 1 1 1 0 0 1 0 0 0 0.28 1.00 -4755 C21orf63 chromosome 21 open reading frame 63 605358 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4756 LRRC34 leucine rich repeat containing 34 617526 1 1 1 1 0 0 1 0 0 0 0.28 1.00 -4757 CPT1A carnitine palmitoyltransferase 1A (liver) 1223391 2 2 2 1 0 1 1 0 0 0 0.28 1.00 -4758 TATDN1 TatD DNase domain containing 1 477594 1 1 1 1 0 1 0 0 0 0 0.28 1.00 -4759 IL1RAP interleukin 1 receptor accessory protein 898911 2 2 2 0 1 0 0 1 0 0 0.28 1.00 -4760 GPR34 G protein-coupled receptor 34 583050 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4761 FAM154A family with sequence similarity 154, member A 709293 1 1 1 1 0 1 0 0 0 0 0.28 1.00 -4762 RNF138 ring finger protein 138 330564 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4763 RTDR1 rhabdoid tumor deletion region gene 1 488748 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4764 KCNH6 potassium voltage-gated channel, subfamily H (eag-related), member 6 1421628 2 2 2 0 1 0 0 0 1 0 0.28 1.00 -4765 PGAP2 497874 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4766 DPP4 dipeptidyl-peptidase 4 (CD26, adenosine deaminase complexing protein 2) 1214265 2 2 2 0 0 1 1 0 0 0 0.28 1.00 -4767 YSK4 yeast Sps1/Ste20-related kinase 4 (S. cerevisiae) 2041689 3 3 3 0 1 0 2 0 0 0 0.28 1.00 -4768 C11orf87 295074 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4769 CELF4 530322 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4770 NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 357435 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4771 GPAT2 793455 1 1 1 1 0 0 0 1 0 0 0.28 1.00 -4772 ZNF765 zinc finger protein 765 803088 1 1 1 0 0 0 0 1 0 0 0.28 1.00 -4773 OSR2 odd-skipped related 2 (Drosophila) 482157 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4774 CAMSAP1 calmodulin regulated spectrin-associated protein 1 1935219 3 3 3 1 0 3 0 0 0 0 0.28 1.00 -4775 CD37 CD37 molecule 445146 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4776 PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) 601302 1 1 1 2 1 0 0 0 0 0 0.28 1.00 -4777 ATXN2 ataxin 2 1674621 3 3 3 1 0 2 1 0 0 0 0.28 1.00 -4778 HNRNPH1 665184 1 1 1 1 0 1 0 0 0 0 0.28 1.00 -4779 ZRSR2 zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 734136 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4780 TJP3 tight junction protein 3 (zona occludens 3) 904995 2 2 2 2 1 1 0 0 0 0 0.28 1.00 -4781 MASTL microtubule associated serine/threonine kinase-like 1302483 2 2 2 0 0 1 1 0 0 0 0.28 1.00 -4782 RIN1 Ras and Rab interactor 1 704223 1 1 1 1 1 0 0 0 0 0 0.28 1.00 -4783 CHST8 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 512070 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4784 ZC3H18 zinc finger CCCH-type containing 18 889278 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4785 SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter family), member 2 542997 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4786 ANP32E acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 423345 1 1 1 2 0 1 0 0 0 0 0.28 1.00 -4787 BAK1 BCL2-antagonist/killer 1 295074 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4788 VN1R2 vomeronasal 1 receptor 2 510042 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4789 HTR2C 5-hydroxytryptamine (serotonin) receptor 2C 706251 1 1 1 0 1 0 0 0 0 0 0.28 1.00 -4790 EPB41L3 erythrocyte membrane protein band 4.1-like 3 1697436 3 3 3 1 0 0 3 0 0 0 0.28 1.00 -4791 UQCRC2 ubiquinol-cytochrome c reductase core protein II 718926 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4792 CTBS chitobiase, di-N-acetyl- 509535 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4793 DUSP10 dual specificity phosphatase 10 740727 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4794 DZIP3 DAZ interacting protein 3, zinc finger 1882491 3 3 3 1 1 1 1 0 0 0 0.28 1.00 -4795 KIF1A kinesin family member 1A 1149369 2 2 2 0 1 1 0 0 0 0 0.28 1.00 -4796 MBD4 methyl-CpG binding domain protein 4 845169 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4797 UTRN utrophin 5373186 8 8 8 0 3 0 3 0 2 0 0.28 1.00 -4798 GALNT4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 882687 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4799 DYRK1B dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 697125 1 1 1 0 0 0 1 0 0 0 0.28 1.00 -4800 ACTR6 ARP6 actin-related protein 6 homolog (yeast) 626145 1 1 1 0 0 0 0 0 1 0 0.28 1.00 -4801 STAM2 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 821340 1 1 1 0 0 1 0 0 0 0 0.28 1.00 -4802 VCAM1 vascular cell adhesion molecule 1 1143792 2 2 2 0 1 0 0 0 1 0 0.28 1.00 -4803 C2orf78 1358760 2 2 2 0 0 1 1 0 0 0 0.28 1.00 -4804 HK3 hexokinase 3 (white cell) 1327833 2 2 2 1 0 2 0 0 0 0 0.28 1.00 -4805 MIB1 mindbomb homolog 1 (Drosophila) 1456104 2 2 2 0 0 0 1 0 1 0 0.28 1.00 -4806 MPHOSPH10 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1015014 2 2 2 0 0 1 1 0 0 0 0.29 1.00 -4807 RCOR1 REST corepressor 1 576459 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4808 CXorf36 chromosome X open reading frame 36 607893 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4809 SNAP91 synaptosomal-associated protein, 91kDa homolog (mouse) 1078389 2 2 2 0 1 0 0 1 0 0 0.29 1.00 -4810 C9orf64 chromosome 9 open reading frame 64 528294 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4811 OR52L1 olfactory receptor, family 52, subfamily L, member 1 503958 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4812 C1orf38 chromosome 1 open reading frame 38 886743 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4813 TEAD2 TEA domain family member 2 662649 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4814 SLC16A2 solute carrier family 16, member 2 (monocarboxylic acid transporter 8) 695604 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4815 ZNF549 zinc finger protein 549 942513 2 2 2 0 0 1 1 0 0 0 0.29 1.00 -4816 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 319917 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4817 FAM115A family with sequence similarity 115, member A 584571 1 1 1 1 0 0 1 0 0 0 0.29 1.00 -4818 OR10G9 olfactory receptor, family 10, subfamily G, member 9 476580 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4819 HUNK hormonally upregulated Neu-associated kinase 975468 2 2 2 1 0 0 2 0 0 0 0.29 1.00 -4820 PPP2R5C protein phosphatase 2, regulatory subunit B', gamma isoform 874068 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4821 AOX1 aldehyde oxidase 1 2082756 3 3 3 1 0 1 2 0 0 0 0.29 1.00 -4822 DBN1 drebrin 1 898404 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4823 HIPK1 homeodomain interacting protein kinase 1 1924065 3 3 3 0 0 0 1 2 0 0 0.29 1.00 -4824 ZFP3 zinc finger protein 3 homolog (mouse) 767091 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4825 AAAS achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A) 864435 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4826 C9 complement component 9 874068 1 1 1 1 0 0 0 0 1 0 0.29 1.00 -4827 ALOX12 arachidonate 12-lipoxygenase 863421 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4828 KIF12 kinesin family member 12 622089 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4829 GORAB 612963 1 1 1 1 0 1 0 0 0 0 0.29 1.00 -4830 LRFN5 leucine rich repeat and fibronectin type III domain containing 5 1103232 2 2 2 0 0 0 1 1 0 0 0.29 1.00 -4831 OR52N4 olfactory receptor, family 52, subfamily N, member 4 491790 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4832 WSB2 WD repeat and SOCS box-containing 2 625638 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4833 PDIA5 protein disulfide isomerase family A, member 5 802074 1 1 1 1 0 0 1 0 0 0 0.29 1.00 -4834 SLC22A10 solute carrier family 22, member 10 844662 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4835 AFF1 AF4/FMR2 family, member 1 1781598 3 3 3 1 0 2 0 0 1 0 0.29 1.00 -4836 COPS6 COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) 478608 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4837 ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 1128582 2 2 2 0 1 0 0 0 1 0 0.29 1.00 -4838 NEIL1 nei endonuclease VIII-like 1 (E. coli) 611442 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4839 STK3 serine/threonine kinase 3 (STE20 homolog, yeast) 755430 1 1 1 1 0 1 0 0 0 0 0.29 1.00 -4840 BGN biglycan 575445 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4841 SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 1208688 2 2 2 1 0 0 2 0 0 0 0.29 1.00 -4842 ZMYM4 zinc finger, MYM-type 4 2395068 4 4 4 1 0 1 2 0 1 0 0.29 1.00 -4843 TMEM195 transmembrane protein 195 704730 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4844 SQLE squalene epoxidase 845676 1 1 1 1 0 0 0 0 1 0 0.29 1.00 -4845 MAP3K11 mitogen-activated protein kinase kinase kinase 11 859872 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4846 RHBDD2 rhomboid domain containing 2 471003 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4847 PHYH phytanoyl-CoA 2-hydroxylase 493818 1 1 1 1 0 0 1 0 0 0 0.29 1.00 -4848 ACRBP acrosin binding protein 823875 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4849 MARK1 MAP/microtubule affinity-regulating kinase 1 1219335 2 2 2 0 0 0 1 1 0 0 0.29 1.00 -4850 FAM107B family with sequence similarity 107, member B 477087 1 1 1 1 0 1 0 0 0 0 0.29 1.00 -4851 PHRF1 903474 1 1 1 2 0 0 0 0 1 0 0.29 1.00 -4852 TNFAIP6 tumor necrosis factor, alpha-induced protein 6 435006 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4853 DPP8 dipeptidyl-peptidase 8 1407939 2 2 2 0 0 0 0 1 1 0 0.29 1.00 -4854 DAPK1 death-associated protein kinase 1 2184663 3 3 3 2 1 1 0 0 1 0 0.29 1.00 -4855 NMUR1 neuromedin U receptor 1 651495 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4856 KEAP1 kelch-like ECH-associated protein 1 831480 2 1 2 0 0 0 0 0 0 2 0.29 1.00 -4857 C22orf23 chromosome 22 open reading frame 23 343746 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4858 PDP2 808158 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4859 WDR43 WD repeat domain 43 945555 2 2 2 0 0 2 0 0 0 0 0.29 1.00 -4860 TSEN34 tRNA splicing endonuclease 34 homolog (S. cerevisiae) 415740 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4861 CCT8L2 chaperonin containing TCP1, subunit 8 (theta)-like 2 828438 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4862 PPA1 pyrophosphatase (inorganic) 1 428922 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4863 RPL19 ribosomal protein L19 307242 1 1 1 1 0 1 0 0 0 0 0.29 1.00 -4864 ITGA8 integrin, alpha 8 1571193 2 2 2 1 0 1 0 0 1 0 0.29 1.00 -4865 MC2R melanocortin 2 receptor (adrenocorticotropic hormone) 455286 1 1 1 0 0 0 0 1 0 0 0.29 1.00 -4866 C4orf49 331071 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4867 ZNF135 zinc finger protein 135 1068756 1 1 1 1 0 0 0 0 1 0 0.29 1.00 -4868 TSHZ2 teashirt zinc finger homeobox 2 1555983 2 2 2 0 0 2 0 0 0 0 0.29 1.00 -4869 SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 723489 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4870 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 753402 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4871 GABPA GA binding protein transcription factor, alpha subunit 60kDa 710307 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4872 PIR pirin (iron-binding nuclear protein) 460863 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4873 AK2 adenylate kinase 2 332592 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4874 IL3RA interleukin 3 receptor, alpha (low affinity) 390897 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4875 IPO13 importin 13 1438866 2 2 2 1 1 0 1 0 0 0 0.29 1.00 -4876 SGPL1 sphingosine-1-phosphate lyase 1 893841 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4877 CREB3 cAMP responsive element binding protein 3 584064 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4878 SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 1062165 2 2 2 0 1 1 0 0 0 0 0.29 1.00 -4879 PTCH1 patched homolog 1 (Drosophila) 2172495 3 3 3 1 1 1 1 0 0 0 0.29 1.00 -4880 SSTR2 somatostatin receptor 2 564798 1 1 1 0 0 0 0 1 0 0 0.29 1.00 -4881 GP6 glycoprotein VI (platelet) 889278 1 1 1 3 0 0 0 0 1 0 0.29 1.00 -4882 RBM44 RNA binding motif protein 44 1598064 3 3 3 0 0 3 0 0 0 0 0.29 1.00 -4883 PLG plasminogen 1274091 2 2 2 1 1 1 0 0 0 0 0.29 1.00 -4884 ARHGAP24 Rho GTPase activating protein 24 1216293 2 2 2 1 2 0 0 0 0 0 0.29 1.00 -4885 RNASE11 ribonuclease, RNase A family, 11 (non-active) 306228 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4886 PRKCZ protein kinase C, zeta 675831 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4887 C9orf119 chromosome 9 open reading frame 119 365040 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4888 BTK Bruton agammaglobulinemia tyrosine kinase 1040364 2 2 2 0 0 1 1 0 0 0 0.29 1.00 -4889 PDZD8 PDZ domain containing 8 1486017 2 2 2 0 1 0 1 0 0 0 0.29 1.00 -4890 CCDC33 coiled-coil domain containing 33 1276626 2 2 2 2 1 0 1 0 0 0 0.29 1.00 -4891 ACOXL acyl-Coenzyme A oxidase-like 814242 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4892 HLTF helicase-like transcription factor 1574742 2 2 2 1 0 0 1 0 1 0 0.29 1.00 -4893 PARVA parvin, alpha 513591 1 1 1 1 1 0 0 0 0 0 0.29 1.00 -4894 GP2 glycoprotein 2 (zymogen granule membrane) 834015 1 1 1 2 0 1 0 0 0 0 0.29 1.00 -4895 MYCN v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) 398502 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4896 RSPH9 403065 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4897 KLHDC1 kelch domain containing 1 594711 1 1 1 0 0 0 0 0 1 0 0.29 1.00 -4898 SCG5 secretogranin V (7B2 protein) 334113 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4899 ZNF627 zinc finger protein 627 674310 1 1 1 1 0 1 0 0 0 0 0.29 1.00 -4900 CCAR1 cell division cycle and apoptosis regulator 1 1799343 3 3 3 0 1 0 1 0 1 0 0.29 1.00 -4901 FAHD2A fumarylacetoacetate hydrolase domain containing 2A 493311 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4902 PCDHB11 protocadherin beta 11 1102725 2 2 2 0 0 1 1 0 0 0 0.29 1.00 -4903 COL12A1 collagen, type XII, alpha 1 4753125 7 7 7 3 1 3 3 0 0 0 0.29 1.00 -4904 TIGIT 347802 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4905 GRXCR1 450723 1 1 1 0 1 0 0 0 0 0 0.29 1.00 -4906 ABCB10 ATP-binding cassette, sub-family B (MDR/TAP), member 10 886236 1 1 1 0 0 0 1 0 0 0 0.29 1.00 -4907 ACTRT2 actin-related protein T2 481143 1 1 1 0 0 1 0 0 0 0 0.29 1.00 -4908 GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 494832 1 1 1 1 1 0 0 0 0 0 0.29 1.00 -4909 HSPBAP1 HSPB (heat shock 27kDa) associated protein 1 759993 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -4910 LEPRE1 leucine proline-enriched proteoglycan (leprecan) 1 866463 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4911 SLITRK3 SLIT and NTRK-like family, member 3 1489566 2 2 2 0 0 1 0 1 0 0 0.30 1.00 -4912 CCDC57 coiled-coil domain containing 57 1096134 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4913 PLXNA3 plexin A3 1943838 3 3 3 0 2 1 0 0 0 0 0.30 1.00 -4914 PABPN1 poly(A) binding protein, nuclear 1 301158 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4915 ECHDC3 enoyl Coenzyme A hydratase domain containing 3 322959 1 1 1 1 0 0 1 0 0 0 0.30 1.00 -4916 KIAA0831 KIAA0831 656058 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4917 C16orf89 398502 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4918 SOS1 son of sevenless homolog 1 (Drosophila) 2029014 3 3 3 0 0 1 1 0 1 0 0.30 1.00 -4919 CHRNA3 cholinergic receptor, nicotinic, alpha 3 781287 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4920 RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 2458443 4 4 4 1 1 1 1 1 0 0 0.30 1.00 -4921 SAFB scaffold attachment factor B 820833 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4922 DHRS12 dehydrogenase/reductase (SDR family) member 12 380757 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -4923 SLITRK6 SLIT and NTRK-like family, member 6 1282710 2 2 2 0 0 1 0 0 1 0 0.30 1.00 -4924 FUT11 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) 567333 1 1 1 1 0 1 0 0 0 0 0.30 1.00 -4925 DRD3 dopamine receptor D3 621075 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4926 DTX2 deltex homolog 2 (Drosophila) 537927 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4927 KCTD18 potassium channel tetramerisation domain containing 18 661635 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -4928 WNT8B wingless-type MMTV integration site family, member 8B 418275 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4929 SIRPA signal-regulatory protein alpha 740727 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4930 FAM193B 794469 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4931 TEKT5 tektin 5 753402 1 1 1 2 0 0 1 0 0 0 0.30 1.00 -4932 ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 1305525 2 2 2 1 0 0 1 1 0 0 0.30 1.00 -4933 AP3D1 adaptor-related protein complex 3, delta 1 subunit 919698 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4934 CCDC42 coiled-coil domain containing 42 338676 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -4935 KCNIP4 Kv channel interacting protein 4 467454 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4936 UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) 1204632 2 2 2 1 0 1 0 1 0 0 0.30 1.00 -4937 C3orf33 chromosome 3 open reading frame 33 391404 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -4938 BEST1 bestrophin 1 841113 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -4939 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae) 1010451 2 2 2 0 0 0 2 0 0 0 0.30 1.00 -4940 SIX2 SIX homeobox 2 408135 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4941 GSTK1 glutathione S-transferase kappa 1 444639 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -4942 SNF8 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) 410163 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -4943 GJA4 gap junction protein, alpha 4, 37kDa 510042 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -4944 ZNF700 zinc finger protein 700 1138215 2 2 2 1 1 0 0 0 1 0 0.30 1.00 -4945 MYO1F myosin IF 1329861 2 2 2 1 0 2 0 0 0 0 0.30 1.00 -4946 MYH11 myosin, heavy chain 11, smooth muscle 3086109 5 5 5 1 2 2 1 0 0 0 0.30 1.00 -4947 KY kyphoscoliosis peptidase 908037 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4948 CD1E CD1e molecule 603837 1 1 1 1 0 0 1 0 0 0 0.30 1.00 -4949 PIK3R6 phosphoinositide-3-kinase, regulatory subunit 6 950625 2 2 2 0 2 0 0 0 0 0 0.30 1.00 -4950 CCBL1 cysteine conjugate-beta lyase, cytoplasmic 667719 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4951 ZNF610 zinc finger protein 610 712335 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4952 RP1 retinitis pigmentosa 1 (autosomal dominant) 3283839 5 5 5 2 2 1 1 0 1 0 0.30 1.00 -4953 NAT9 N-acetyltransferase 9 328029 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -4954 ZNF76 zinc finger protein 76 (expressed in testis) 890799 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4955 TBC1D8B TBC1 domain family, member 8B (with GRAM domain) 1781091 3 3 3 0 3 0 0 0 0 0 0.30 1.00 -4956 ZNF680 zinc finger protein 680 815763 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4957 MOSC2 MOCO sulphurase C-terminal domain containing 2 385320 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -4958 PCBP4 poly(rC) binding protein 4 599274 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4959 USP15 ubiquitin specific peptidase 15 1444950 2 2 2 1 0 0 0 1 1 0 0.30 1.00 -4960 RIBC1 RIB43A domain with coiled-coils 1 607893 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -4961 OR1L8 olfactory receptor, family 1, subfamily L, member 8 473538 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4962 MAPK1 mitogen-activated protein kinase 1 502944 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4963 HAUS8 647439 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -4964 TMOD1 tropomodulin 1 565812 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4965 FXR2 fragile X mental retardation, autosomal homolog 2 942513 2 2 2 0 0 1 0 1 0 0 0.30 1.00 -4966 ZFP91 zinc finger protein 91 homolog (mouse) 741741 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4967 MATN2 matrilin 2 1472328 2 2 2 0 0 2 0 0 0 0 0.30 1.00 -4968 CCNT2 cyclin T2 1088022 1 1 1 1 0 0 0 0 1 0 0.30 1.00 -4969 ZSCAN1 zinc finger and SCAN domain containing 1 400023 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -4970 GIPC1 GIPC PDZ domain containing family, member 1 326508 1 1 1 1 0 1 0 0 0 0 0.30 1.00 -4971 CLUL1 clusterin-like 1 (retinal) 726531 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4972 SLC6A3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 563784 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -4973 KCNK3 potassium channel, subfamily K, member 3 331071 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4974 RTEL1 regulator of telomere elongation helicase 1 538434 1 1 1 2 0 1 0 0 0 0 0.30 1.00 -4975 KRT28 keratin 28 720447 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -4976 VLDLR very low density lipoprotein receptor 1324284 2 2 1 0 2 0 0 0 0 0 0.30 1.00 -4977 MEOX1 mesenchyme homeobox 1 314340 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -4978 EBP emopamil binding protein (sterol isomerase) 355914 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4979 C5orf28 chromosome 5 open reading frame 28 332592 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4980 TRIM17 tripartite motif-containing 17 698646 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -4981 FAM54B family with sequence similarity 54, member B 457821 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -4982 POU2F2 POU class 2 homeobox 2 526773 1 1 1 1 0 0 0 1 0 0 0.30 1.00 -4983 TCF12 transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1150890 2 2 2 0 1 0 1 0 0 0 0.30 1.00 -4984 NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 367068 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -4985 CCDC45 coiled-coil domain containing 45 1159509 2 2 2 1 1 0 1 0 0 0 0.30 1.00 -4986 FAM98B family with sequence similarity 98, member B 479622 1 1 1 1 1 0 0 0 0 0 0.30 1.00 -4987 C9orf131 chromosome 9 open reading frame 131 1646736 3 3 3 0 1 2 0 0 0 0 0.30 1.00 -4988 BCL9 B-cell CLL/lymphoma 9 2184663 3 3 3 0 1 0 0 0 2 0 0.30 1.00 -4989 CUEDC1 CUE domain containing 1 526266 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4990 OTOP3 otopetrin 3 865956 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4991 CDC5L CDC5 cell division cycle 5-like (S. pombe) 1228968 2 2 2 0 0 2 0 0 0 0 0.30 1.00 -4992 N6AMT2 N-6 adenine-specific DNA methyltransferase 2 (putative) 335127 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -4993 GATA2 GATA binding protein 2 411684 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -4994 C5orf4 chromosome 5 open reading frame 4 524238 1 1 1 1 0 0 0 1 0 0 0.30 1.00 -4995 SNCAIP synuclein, alpha interacting protein (synphilin) 1419600 2 2 2 2 0 1 1 0 0 0 0.30 1.00 -4996 FGF23 fibroblast growth factor 23 389376 1 1 1 2 0 1 0 0 0 0 0.30 1.00 -4997 JARID2 jumonji, AT rich interactive domain 2 1802385 3 3 3 1 0 2 1 0 0 0 0.30 1.00 -4998 ACVR1C activin A receptor, type IC 730587 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -4999 SPRYD5 SPRY domain containing 5 490776 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -5000 OLFML2A olfactomedin-like 2A 766584 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5001 TCEAL2 transcription elongation factor A (SII)-like 2 348816 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5002 TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa 534378 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5003 KRT34 keratin 34 676845 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5004 ZNF574 zinc finger protein 574 1366365 2 2 2 1 1 0 1 0 0 0 0.30 1.00 -5005 ACCN4 amiloride-sensitive cation channel 4, pituitary 913614 1 1 1 1 0 0 0 1 0 0 0.30 1.00 -5006 ZIC3 Zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) 485706 1 1 1 1 0 0 1 0 0 0 0.30 1.00 -5007 CTNNA3 catenin (cadherin-associated protein), alpha 3 1397292 2 2 2 1 0 1 0 0 1 0 0.30 1.00 -5008 EPHX1 epoxide hydrolase 1, microsomal (xenobiotic) 708786 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -5009 ZNF770 zinc finger protein 770 1054560 2 2 2 0 0 1 1 0 0 0 0.30 1.00 -5010 ABI3 ABI gene family, member 3 336141 1 1 1 1 0 0 1 0 0 0 0.30 1.00 -5011 FAM75A3 family with sequence similarity 75, member A3 782808 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5012 FYB FYN binding protein (FYB-120/130) 1216800 2 2 2 0 1 0 1 0 0 0 0.30 1.00 -5013 SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 606879 1 1 1 1 0 0 1 0 0 0 0.30 1.00 -5014 SRBD1 S1 RNA binding domain 1 1555476 2 2 2 3 1 0 0 0 1 0 0.30 1.00 -5015 FPR1 formyl peptide receptor 1 535899 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -5016 WBP4 WW domain binding protein 4 (formin binding protein 21) 590655 1 1 1 1 0 1 0 0 0 0 0.30 1.00 -5017 C1GALT1C1 C1GALT1-specific chaperone 1 487227 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -5018 CNNM1 cyclin M1 884208 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5019 TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 671775 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -5020 ADCK1 aarF domain containing kinase 1 817284 1 1 1 0 0 0 0 0 1 0 0.30 1.00 -5021 KPNA5 karyopherin alpha 5 (importin alpha 6) 849732 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5022 EAF2 ELL associated factor 2 409149 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5023 MPP3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) 750867 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5024 TNRC6A trinucleotide repeat containing 6A 3031860 4 4 4 1 1 2 0 0 1 0 0.30 1.00 -5025 ECD ecdysoneless homolog (Drosophila) 1007409 2 2 2 0 0 0 1 1 0 0 0.30 1.00 -5026 MTMR15 myotubularin related protein 15 1587417 2 2 2 1 0 0 0 0 2 0 0.30 1.00 -5027 SLC4A1 solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) 1320228 2 2 2 0 1 1 0 0 0 0 0.30 1.00 -5028 IL10RA interleukin 10 receptor, alpha 858351 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5029 PPP1R16B protein phosphatase 1, regulatory (inhibitor) subunit 16B 755430 1 1 1 0 1 0 0 0 0 0 0.30 1.00 -5030 FRMD6 FERM domain containing 6 961779 2 2 2 1 2 0 0 0 0 0 0.30 1.00 -5031 CHN2 chimerin (chimaerin) 2 763542 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5032 SLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 1568658 2 2 2 0 0 0 1 0 1 0 0.30 1.00 -5033 PAPD7 813735 1 1 1 0 0 0 0 1 0 0 0.30 1.00 -5034 PTPN7 protein tyrosine phosphatase, non-receptor type 7 622089 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5035 SLC41A2 solute carrier family 41, member 2 817791 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5036 ZEB1 zinc finger E-box binding homeobox 1 1705041 3 3 3 0 1 2 0 0 0 0 0.30 1.00 -5037 CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 790413 1 1 1 1 0 1 0 0 0 0 0.30 1.00 -5038 COL27A1 collagen, type XXVII, alpha 1 2331186 3 3 3 1 1 1 1 0 0 0 0.30 1.00 -5039 LIMA1 LIM domain and actin binding 1 1177761 2 2 2 2 0 0 1 1 0 0 0.30 1.00 -5040 ALK anaplastic lymphoma receptor tyrosine kinase 2300766 3 3 3 2 0 1 0 0 2 0 0.30 1.00 -5041 NAV3 neuron navigator 3 3674736 5 5 5 2 0 1 2 0 2 0 0.30 1.00 -5042 LYG2 lysozyme G-like 2 334113 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5043 ZCCHC7 zinc finger, CCHC domain containing 7 843648 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5044 INMT indolethylamine N-methyltransferase 400023 1 1 1 0 0 1 0 0 0 0 0.30 1.00 -5045 CYSLTR1 cysteinyl leukotriene receptor 1 516126 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5046 C14orf105 chromosome 14 open reading frame 105 463905 1 1 1 1 0 0 1 0 0 0 0.30 1.00 -5047 ZNF81 zinc finger protein 81 1015014 2 2 2 0 0 1 0 1 0 0 0.30 1.00 -5048 DDB1 damage-specific DNA binding protein 1, 127kDa 1757262 3 3 3 0 0 3 0 0 0 0 0.30 1.00 -5049 OR9A2 olfactory receptor, family 9, subfamily A, member 2 475059 1 1 1 0 0 0 1 0 0 0 0.30 1.00 -5050 ZNF398 zinc finger protein 398 975975 2 2 2 0 2 0 0 0 0 0 0.30 1.00 -5051 GRB10 growth factor receptor-bound protein 10 937443 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5052 RREB1 ras responsive element binding protein 1 2135484 3 3 2 0 2 1 0 0 0 0 0.31 1.00 -5053 NETO1 neuropilin (NRP) and tolloid (TLL)-like 1 809172 1 1 1 1 0 1 0 0 0 0 0.31 1.00 -5054 OR51G2 olfactory receptor, family 51, subfamily G, member 2 481143 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5055 CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6 771147 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5056 ATP6V0A4 ATPase, H+ transporting, lysosomal V0 subunit a4 1319721 2 2 2 0 0 0 2 0 0 0 0.31 1.00 -5057 ZNF10 zinc finger protein 10 881166 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5058 MCAT malonyl CoA:ACP acyltransferase (mitochondrial) 380757 1 1 1 1 1 0 0 0 0 0 0.31 1.00 -5059 RASA1 RAS p21 protein activator (GTPase activating protein) 1 1463709 2 2 2 0 0 0 1 0 1 0 0.31 1.00 -5060 GLB1L galactosidase, beta 1-like 1028703 2 2 2 1 0 2 0 0 0 0 0.31 1.00 -5061 HDAC3 histone deacetylase 3 682422 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5062 MYCBPAP MYCBP associated protein 1454076 2 2 2 0 0 2 0 0 0 0 0.31 1.00 -5063 AAK1 AP2 associated kinase 1 1245192 2 2 2 0 0 1 0 0 1 0 0.31 1.00 -5064 CPEB2 cytoplasmic polyadenylation element binding protein 2 742248 1 1 1 2 0 0 1 0 0 0 0.31 1.00 -5065 FAM92A1 family with sequence similarity 92, member A1 402558 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5066 KIAA0141 KIAA0141 791427 1 1 1 1 0 0 0 0 1 0 0.31 1.00 -5067 MICAL2 microtubule associated monoxygenase, calponin and LIM domain containing 2 1761825 3 3 3 0 0 1 0 1 1 0 0.31 1.00 -5068 WDR45 WD repeat domain 45 570882 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5069 TMEM131 transmembrane protein 131 2697240 4 4 4 0 0 0 2 0 2 0 0.31 1.00 -5070 CUX1 cut-like homeobox 1 2229786 2 2 2 2 0 0 0 0 2 0 0.31 1.00 -5071 FOXJ2 forkhead box J2 894855 1 1 1 1 0 0 0 1 0 0 0.31 1.00 -5072 XK X-linked Kx blood group (McLeod syndrome) 556686 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5073 NUB1 negative regulator of ubiquitin-like proteins 1 795990 1 1 1 0 0 0 0 1 0 0 0.31 1.00 -5074 KRT71 keratin 71 815256 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5075 C12orf42 chromosome 12 open reading frame 42 559221 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5076 SPATA18 spermatogenesis associated 18 homolog (rat) 842634 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5077 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle) 754923 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5078 LRFN1 leucine rich repeat and fibronectin type III domain containing 1 435513 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5079 MAGEA1 melanoma antigen family A, 1 (directs expression of antigen MZ2-E) 473538 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5080 CACNB2 calcium channel, voltage-dependent, beta 2 subunit 1081431 2 2 2 0 2 0 0 0 0 0 0.31 1.00 -5081 ACSBG2 acyl-CoA synthetase bubblegum family member 2 1027689 2 2 2 1 1 1 0 0 0 0 0.31 1.00 -5082 PNLIP pancreatic lipase 733122 1 1 1 1 0 0 0 1 0 0 0.31 1.00 -5083 YTHDC1 YTH domain containing 1 1124019 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5084 CPNE8 copine VIII 848211 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5085 MPP7 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 910065 1 1 1 1 0 0 0 1 0 0 0.31 1.00 -5086 IP6K2 757458 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5087 LPHN2 latrophilin 2 2174016 3 3 3 0 1 0 1 0 1 0 0.31 1.00 -5088 CCDC90A coiled-coil domain containing 90A 353379 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5089 EPHB1 EPH receptor B1 1530633 2 2 2 2 0 2 0 0 0 0 0.31 1.00 -5090 PTPLA protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A 321438 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5091 COL4A5 collagen, type IV, alpha 5 (Alport syndrome) 2618148 4 4 4 1 0 3 0 0 1 0 0.31 1.00 -5092 GTPBP2 GTP binding protein 2 867984 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5093 MAPRE2 microtubule-associated protein, RP/EB family, member 2 473031 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5094 SHC3 SHC (Src homology 2 domain containing) transforming protein 3 705744 1 1 1 1 0 1 0 0 0 0 0.31 1.00 -5095 CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 342732 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5096 CYB5R4 cytochrome b5 reductase 4 786357 1 1 1 0 0 0 0 1 0 0 0.31 1.00 -5097 SAMD4A sterile alpha motif domain containing 4A 958230 2 2 2 0 1 0 1 0 0 0 0.31 1.00 -5098 ZNF613 zinc finger protein 613 948090 2 2 2 1 1 1 0 0 0 0 0.31 1.00 -5099 ZNF577 zinc finger protein 577 747318 1 1 1 1 0 1 0 0 0 0 0.31 1.00 -5100 KIR3DL3 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3 402051 1 1 1 1 0 1 0 0 0 0 0.31 1.00 -5101 SBSN suprabasin 487227 1 1 1 1 0 1 0 0 0 0 0.31 1.00 -5102 L3MBTL4 l(3)mbt-like 4 (Drosophila) 925275 1 1 1 1 0 0 0 0 1 0 0.31 1.00 -5103 ARHGEF10L Rho guanine nucleotide exchange factor (GEF) 10-like 1165086 2 2 2 1 0 1 1 0 0 0 0.31 1.00 -5104 TSC22D2 TSC22 domain family, member 2 500409 1 1 1 0 0 0 0 1 0 0 0.31 1.00 -5105 ZC3H4 zinc finger CCCH-type containing 4 1408953 2 2 2 0 0 1 0 0 1 0 0.31 1.00 -5106 TARS2 threonyl-tRNA synthetase 2, mitochondrial (putative) 1130103 2 2 2 1 1 0 1 0 0 0 0.31 1.00 -5107 C10orf129 chromosome 10 open reading frame 129 351351 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5108 NOP14 1080924 2 2 2 0 0 1 1 0 0 0 0.31 1.00 -5109 DOC2A double C2-like domains, alpha 587106 1 1 1 3 0 0 1 0 0 0 0.31 1.00 -5110 C16orf91 356421 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5111 ELMOD2 ELMO/CED-12 domain containing 2 463398 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5112 ABCC12 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 2126865 3 3 3 3 1 1 1 0 0 0 0.31 1.00 -5113 CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 1077375 2 2 2 0 0 0 1 1 0 0 0.31 1.00 -5114 STARD3NL STARD3 N-terminal like 371631 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5115 ZNF774 zinc finger protein 774 742248 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5116 KIAA0652 820326 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5117 MFSD9 major facilitator superfamily domain containing 9 711828 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5118 C14orf39 chromosome 14 open reading frame 39 928824 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5119 C10orf140 chromosome 10 open reading frame 140 870012 1 1 1 2 0 0 0 1 0 0 0.31 1.00 -5120 SH2D4A SH2 domain containing 4A 710307 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5121 CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 765063 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5122 C7orf28A chromosome 7 open reading frame 28A 627159 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5123 OR3A2 olfactory receptor, family 3, subfamily A, member 2 491790 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5124 VRK3 vaccinia related kinase 3 746811 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5125 HS3ST2 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 363519 1 1 1 1 1 0 0 0 0 0 0.31 1.00 -5126 KRT2 keratin 2 (epidermal ichthyosis bullosa of Siemens) 988650 2 2 2 2 2 0 0 0 0 0 0.31 1.00 -5127 NR2E1 nuclear receptor subfamily 2, group E, member 1 468975 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5128 SLC25A38 solute carrier family 25, member 38 472017 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5129 GPR151 G protein-coupled receptor 151 640848 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5130 PCDHGA12 protocadherin gamma subfamily A, 12 1446978 2 2 2 1 0 1 1 0 0 0 0.31 1.00 -5131 HIP1R huntingtin interacting protein 1 related 890799 1 1 1 1 0 0 0 1 0 0 0.31 1.00 -5132 GRK6 G protein-coupled receptor kinase 6 736671 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5133 LAS1L LAS1-like (S. cerevisiae) 1030731 2 2 2 1 1 0 1 0 0 0 0.31 1.00 -5134 MON1B MON1 homolog B (yeast) 759993 1 1 1 0 0 0 0 1 0 0 0.31 1.00 -5135 IFNK interferon, kappa 318396 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5136 UBA1 ubiquitin-like modifier activating enzyme 1 1658904 3 3 3 1 1 2 0 0 0 0 0.31 1.00 -5137 PCDH18 protocadherin 18 1735968 3 3 3 0 2 1 0 0 0 0 0.31 1.00 -5138 NDFIP2 Nedd4 family interacting protein 2 361998 1 1 1 0 0 0 0 1 0 0 0.31 1.00 -5139 LUZP2 leucine zipper protein 2 518661 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5140 GJB5 gap junction protein, beta 5, 31.1kDa 418782 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5141 PRDM4 PR domain containing 4 1242150 2 2 2 1 0 0 1 1 0 0 0.31 1.00 -5142 OR52A4 olfactory receptor, family 52, subfamily A, member 4 465933 1 1 1 0 0 0 0 1 0 0 0.31 1.00 -5143 UBXN4 756951 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5144 SCCPDH saccharopine dehydrogenase (putative) 580008 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5145 HADH hydroxyacyl-Coenzyme A dehydrogenase 454272 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5146 CER1 cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis) 411684 1 1 1 0 0 0 0 1 0 0 0.31 1.00 -5147 THAP5 THAP domain containing 5 400530 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5148 KIF4B kinesin family member 4B 1880463 3 3 3 0 1 1 1 0 0 0 0.31 1.00 -5149 C9orf3 chromosome 9 open reading frame 3 1089036 2 2 2 1 0 2 0 0 0 0 0.31 1.00 -5150 BCL2L13 BCL2-like 13 (apoptosis facilitator) 751374 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5151 FMO3 flavin containing monooxygenase 3 826917 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5152 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 499902 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5153 OR52K1 olfactory receptor, family 52, subfamily K, member 1 481143 1 1 1 1 0 0 1 0 0 0 0.31 1.00 -5154 OR11H4 olfactory receptor, family 11, subfamily H, member 4 496353 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5155 REM1 RAS (RAD and GEM)-like GTP-binding 1 322959 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5156 RAB36 RAB36, member RAS oncogene family 363519 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5157 MARK4 MAP/microtubule affinity-regulating kinase 4 791934 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5158 HTR1A 5-hydroxytryptamine (serotonin) receptor 1A 644397 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5159 ALG2 asparagine-linked glycosylation 2 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase) 459849 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5160 KAZ 888264 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5161 ECT2 epithelial cell transforming sequence 2 oncogene 1391208 2 2 2 0 1 0 0 0 1 0 0.31 1.00 -5162 SERPINB1 serpin peptidase inhibitor, clade B (ovalbumin), member 1 590148 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5163 OR8U1 olfactory receptor, family 8, subfamily U, member 1 473538 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5164 ZRANB3 zinc finger, RAN-binding domain containing 3 1546857 2 2 2 1 0 1 0 0 1 0 0.31 1.00 -5165 MBD6 methyl-CpG binding domain protein 6 1518465 2 2 2 0 0 0 1 0 1 0 0.31 1.00 -5166 PKP4 plakophilin 4 1857141 3 3 3 1 0 3 0 0 0 0 0.31 1.00 -5167 UBA7 ubiquitin-like modifier activating enzyme 7 1491594 2 2 2 0 0 1 1 0 0 0 0.31 1.00 -5168 HIST1H1D histone cluster 1, H1d 339690 1 1 1 0 1 0 0 0 0 0 0.31 1.00 -5169 MMP19 matrix metallopeptidase 19 778752 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5170 SLC27A4 solute carrier family 27 (fatty acid transporter), member 4 982059 2 2 2 0 1 0 0 0 1 0 0.31 1.00 -5171 MARCH5 membrane-associated ring finger (C3HC4) 5 416754 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5172 CDSN corneodesmosin 745290 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5173 AMT aminomethyltransferase 643383 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5174 MARVELD3 MARVEL domain containing 3 703716 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5175 ILKAP integrin-linked kinase-associated serine/threonine phosphatase 2C 592176 1 1 1 0 0 0 0 0 1 0 0.31 1.00 -5176 ZNF354B zinc finger protein 354B 925782 1 1 1 0 0 0 1 0 0 0 0.31 1.00 -5177 OTOP1 otopetrin 1 735150 1 1 1 1 0 1 0 0 0 0 0.31 1.00 -5178 DNAH17 dynein, axonemal, heavy chain 17 5562804 7 7 7 2 1 2 1 1 2 0 0.31 1.00 -5179 THUMPD2 THUMP domain containing 2 720954 1 1 1 0 0 1 0 0 0 0 0.31 1.00 -5180 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 575952 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5181 SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 461370 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5182 AGAP11 813228 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5183 DDB2 damage-specific DNA binding protein 2, 48kDa 671268 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5184 OR52M1 olfactory receptor, family 52, subfamily M, member 1 485706 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5185 CACNA1I calcium channel, voltage-dependent, T type, alpha 1I subunit 1345578 2 2 2 1 0 1 0 1 0 0 0.32 1.00 -5186 RNF168 ring finger protein 168 882180 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5187 UGT2A2 UDP glucuronosyltransferase 2 family, polypeptide A2 816777 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5188 ZNF500 zinc finger protein 500 553644 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5189 HPS4 Hermansky-Pudlak syndrome 4 1076361 2 2 2 1 1 0 1 0 0 0 0.32 1.00 -5190 WDFY1 WD repeat and FYVE domain containing 1 577980 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5191 OR52R1 olfactory receptor, family 52, subfamily R, member 1 482157 1 1 1 1 1 0 0 0 0 0 0.32 1.00 -5192 FZD6 frizzled homolog 6 (Drosophila) 1087515 2 2 2 0 0 0 2 0 0 0 0.32 1.00 -5193 ADRBK1 adrenergic, beta, receptor kinase 1 616005 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5194 PHKG2 phosphorylase kinase, gamma 2 (testis) 587106 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5195 ANKMY1 ankyrin repeat and MYND domain containing 1 1201083 2 2 2 0 1 0 0 0 1 0 0.32 1.00 -5196 TAPT1 transmembrane anterior posterior transformation 1 466947 1 1 1 1 1 0 0 0 0 0 0.32 1.00 -5197 CKMT2 creatine kinase, mitochondrial 2 (sarcomeric) 657072 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5198 EPAS1 endothelial PAS domain protein 1 1241643 2 2 2 1 0 0 1 0 1 0 0.32 1.00 -5199 TMCC2 transmembrane and coiled-coil domain family 2 823875 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5200 NPC1 Niemann-Pick disease, type C1 1959048 3 3 3 0 2 0 1 0 0 0 0.32 1.00 -5201 ADCK4 aarF domain containing kinase 4 806637 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5202 OR52N5 olfactory receptor, family 52, subfamily N, member 5 496353 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5203 HMGCS2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial) 792441 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5204 SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1 886236 1 1 1 1 0 0 0 1 0 0 0.32 1.00 -5205 LINGO2 leucine rich repeat and Ig domain containing 2 925275 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5206 HYAL2 hyaluronoglucosaminidase 2 636792 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5207 ZMYND15 zinc finger, MYND-type containing 15 936936 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5208 IQCD IQ motif containing D 533364 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5209 CARD11 caspase recruitment domain family, member 11 1347099 2 2 2 2 0 2 0 0 0 0 0.32 1.00 -5210 RFX7 2156778 3 3 3 0 0 1 0 0 2 0 0.32 1.00 -5211 ESRRB estrogen-related receptor beta 652509 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5212 IMPG1 interphotoreceptor matrix proteoglycan 1 1248234 2 2 2 0 0 2 0 0 0 0 0.32 1.00 -5213 KLF6 Kruppel-like factor 6 415740 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5214 CYP2F1 cytochrome P450, family 2, subfamily F, polypeptide 1 730080 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5215 SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 1624935 2 2 2 0 0 0 1 0 1 0 0.32 1.00 -5216 KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 499395 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5217 FAM188A 659100 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5218 TRIM8 tripartite motif-containing 8 560742 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5219 ANKRD34B ankyrin repeat domain 34B 785343 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5220 ZNF689 zinc finger protein 689 589641 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5221 CDCA7 cell division cycle associated 7 693576 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5222 TGFBR3 transforming growth factor, beta receptor III 1265979 2 2 2 0 0 2 0 0 0 0 0.32 1.00 -5223 ASTL astacin-like metallo-endopeptidase (M12 family) 614484 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5224 HCLS1 hematopoietic cell-specific Lyn substrate 1 767091 1 1 1 1 0 0 0 0 1 0 0.32 1.00 -5225 C13orf39 411177 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5226 ZBTB49 1179282 1 1 1 1 0 0 0 0 1 0 0.32 1.00 -5227 CCDC74B coiled-coil domain containing 74B 346788 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5228 LMNB1 lamin B1 730587 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5229 TMEM132A transmembrane protein 132A 1262937 2 2 2 1 1 1 0 0 0 0 0.32 1.00 -5230 SLC7A3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 964821 1 1 1 2 0 0 0 0 1 0 0.32 1.00 -5231 PER2 period homolog 2 (Drosophila) 1804920 3 3 3 2 1 0 1 0 1 0 0.32 1.00 -5232 KBTBD8 kelch repeat and BTB (POZ) domain containing 8 913614 1 1 1 1 0 0 0 0 1 0 0.32 1.00 -5233 PRICKLE1 prickle homolog 1 (Drosophila) 1279668 2 2 2 0 1 0 1 0 0 0 0.32 1.00 -5234 OR52B6 olfactory receptor, family 52, subfamily B, member 6 513084 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5235 POGK pogo transposable element with KRAB domain 935922 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5236 SPIN2A spindlin family, member 2A 345774 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5237 ATG2B ATG2 autophagy related 2 homolog B (S. cerevisiae) 3219450 4 4 4 1 0 2 2 0 0 0 0.32 1.00 -5238 SRCRB4D scavenger receptor cysteine rich domain containing, group B (4 domains) 532857 1 1 1 1 0 1 0 0 0 0 0.32 1.00 -5239 PRSS35 protease, serine, 35 631722 1 1 1 1 1 0 0 0 0 0 0.32 1.00 -5240 CSF3R colony stimulating factor 3 receptor (granulocyte) 1399320 2 2 2 0 0 0 1 1 0 0 0.32 1.00 -5241 CDK17 827424 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5242 CCDC141 coiled-coil domain containing 141 1356732 2 2 2 0 0 0 2 0 0 0 0.32 1.00 -5243 CCRL1 chemokine (C-C motif) receptor-like 1 535899 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5244 CAPN10 calpain 10 836043 1 1 1 1 0 0 0 1 0 0 0.32 1.00 -5245 CAMKV CaM kinase-like vesicle-associated 773682 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5246 PROC protein C (inactivator of coagulation factors Va and VIIIa) 561756 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5247 PRPF8 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) 3589560 5 5 5 0 1 3 1 0 0 0 0.32 1.00 -5248 CTSS cathepsin S 519168 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5249 TCIRG1 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 500916 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5250 TSSK2 testis-specific serine kinase 2 548067 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5251 GBP1 guanylate binding protein 1, interferon-inducible, 67kDa 922233 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5252 MED25 mediator complex subunit 25 784836 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5253 ZBTB25 zinc finger and BTB domain containing 25 667212 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5254 CACNB1 calcium channel, voltage-dependent, beta 1 subunit 945555 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5255 MYO7B myosin VIIB 1838889 3 3 3 1 1 1 1 0 0 0 0.32 1.00 -5256 PHF19 PHD finger protein 19 754923 1 1 1 1 0 0 1 0 0 0 0.32 1.00 -5257 SCN3A sodium channel, voltage-gated, type III, alpha subunit 3144921 5 5 5 0 1 1 1 1 1 0 0.32 1.00 -5258 ANO7 763542 1 1 1 1 0 1 0 0 0 0 0.32 1.00 -5259 TMEM161B transmembrane protein 161B 766584 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5260 CLDND1 claudin domain containing 1 427908 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5261 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 722982 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5262 YIPF6 Yip1 domain family, member 6 343746 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5263 RMI1 RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) 954174 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5264 ADAMTSL1 ADAMTS-like 1 2433600 3 3 3 3 0 1 0 1 1 0 0.32 1.00 -5265 ZNF337 zinc finger protein 337 1151904 2 2 2 0 1 0 0 0 1 0 0.32 1.00 -5266 PHF12 PHD finger protein 12 1530633 2 2 2 0 0 0 1 0 1 0 0.32 1.00 -5267 SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 2246517 3 3 3 0 1 0 2 0 0 0 0.32 1.00 -5268 SH3YL1 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) 386334 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5269 MAP7D1 MAP7 domain containing 1 721968 1 1 1 0 1 0 0 0 0 0 0.32 1.00 -5270 GIN1 gypsy retrotransposon integrase 1 809679 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5271 ACSF2 acyl-CoA synthetase family member 2 902460 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5272 BBS2 Bardet-Biedl syndrome 2 1071291 2 2 2 1 0 1 1 0 0 0 0.32 1.00 -5273 SLC22A25 solute carrier family 22, member 25 851760 1 1 1 1 1 0 0 0 0 0 0.32 1.00 -5274 MYBL1 v-myb myeloblastosis viral oncogene homolog (avian)-like 1 1124526 2 2 2 0 0 1 0 1 0 0 0.32 1.00 -5275 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 815763 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5276 IRAK3 interleukin-1 receptor-associated kinase 3 862914 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5277 ZSWIM4 zinc finger, SWIM-type containing 4 1337973 2 2 2 0 1 0 0 1 0 0 0.32 1.00 -5278 SYNPO2L synaptopodin 2-like 937950 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5279 TREM2 triggering receptor expressed on myeloid cells 2 361491 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5280 NOL10 nucleolar protein 10 948090 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5281 CR2 complement component (3d/Epstein Barr virus) receptor 2 1669551 2 2 2 2 0 0 1 1 0 0 0.32 1.00 -5282 LMBR1L limb region 1 homolog (mouse)-like 779766 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5283 FKBPL FK506 binding protein like 534378 1 1 1 0 0 0 0 1 0 0 0.32 1.00 -5284 MEN1 multiple endocrine neoplasia I 841113 1 1 1 1 0 0 0 0 1 0 0.32 1.00 -5285 BTBD11 BTB (POZ) domain containing 11 1117428 2 2 2 0 1 1 0 0 0 0 0.32 1.00 -5286 ARHGAP5 Rho GTPase activating protein 5 2298231 3 3 3 0 0 2 0 0 1 0 0.32 1.00 -5287 BLK B lymphoid tyrosine kinase 507507 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5288 FGFR2 fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome) 1366872 2 2 1 1 0 2 0 0 0 0 0.32 1.00 -5289 LARS2 leucyl-tRNA synthetase 2, mitochondrial 1415544 2 2 2 0 0 1 0 0 1 0 0.32 1.00 -5290 GRTP1 growth hormone regulated TBC protein 1 398502 1 1 1 0 0 1 0 0 0 0 0.32 1.00 -5291 SEZ6L seizure related 6 homolog (mouse)-like 1460160 2 2 2 0 1 0 0 0 1 0 0.32 1.00 -5292 SRCAP Snf2-related CREBBP activator protein 4878861 7 7 7 3 3 1 1 2 0 0 0.32 1.00 -5293 HORMAD1 HORMA domain containing 1 629187 1 1 1 0 0 0 1 0 0 0 0.32 1.00 -5294 ACAP2 1202604 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5295 LPCAT4 767091 1 1 1 0 0 0 0 0 1 0 0.32 1.00 -5296 RSPH3 radial spoke head 3 homolog (Chlamydomonas) 797004 1 1 1 0 0 0 0 1 0 0 0.33 1.00 -5297 GJA10 gap junction protein, alpha 10, 62kDa 829452 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5298 ANKRD34A ankyrin repeat domain 34A 757458 1 1 1 2 1 0 0 0 0 0 0.33 1.00 -5299 LRRC33 leucine rich repeat containing 33 1049997 2 2 2 2 1 0 1 0 0 0 0.33 1.00 -5300 KIF27 kinesin family member 27 2166918 3 3 3 0 1 1 1 0 0 0 0.33 1.00 -5301 SAMD8 sterile alpha motif domain containing 8 505479 1 1 1 0 0 0 0 1 0 0 0.33 1.00 -5302 C1orf94 chromosome 1 open reading frame 94 684957 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5303 FAM22A family with sequence similarity 22, member A 394953 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5304 TLN2 talin 2 3904914 4 4 4 1 0 2 0 1 1 0 0.33 1.00 -5305 CD276 CD276 molecule 606372 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5306 ESPN espin 351351 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5307 DKC1 dyskeratosis congenita 1, dyskerin 803595 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5308 ZC4H2 361998 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5309 OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 484185 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5310 TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 2979132 4 4 4 0 2 1 1 0 0 0 0.33 1.00 -5311 CNTNAP2 contactin associated protein-like 2 2023437 3 3 3 2 1 0 1 0 1 0 0.33 1.00 -5312 RASAL1 RAS protein activator like 1 (GAP1 like) 989157 1 1 1 0 0 0 0 1 0 0 0.33 1.00 -5313 FNBP1 formin binding protein 1 885222 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5314 ZNF655 zinc finger protein 655 975975 1 1 1 1 0 0 0 0 1 0 0.33 1.00 -5315 LAMC1 laminin, gamma 1 (formerly LAMB2) 2291640 2 2 2 1 1 0 0 0 1 0 0.33 1.00 -5316 BTN3A1 butyrophilin, subfamily 3, member A1 800046 1 1 1 1 0 0 1 0 0 0 0.33 1.00 -5317 POU5F2 POU domain class 5, transcription factor 2 443118 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5318 SIAE sialic acid acetylesterase 781287 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5319 SERPINI1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 641355 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5320 RBM9 RNA binding motif protein 9 618033 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5321 OR10A2 olfactory receptor, family 10, subfamily A, member 2 464412 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5322 ACAA2 acetyl-Coenzyme A acyltransferase 2 577473 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5323 OR5D14 olfactory receptor, family 5, subfamily D, member 14 481143 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5324 FZD1 frizzled homolog 1 (Drosophila) 732108 1 1 1 1 0 1 0 0 0 0 0.33 1.00 -5325 SLC25A14 solute carrier family 25 (mitochondrial carrier, brain), member 14 516126 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5326 CCDC30 1215279 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5327 TNPO1 transportin 1 1405911 2 2 2 0 1 0 0 0 1 0 0.33 1.00 -5328 ZNF473 zinc finger protein 473 1334424 2 2 2 0 2 0 0 0 0 0 0.33 1.00 -5329 CCDC144B coiled-coil domain containing 144B 542490 1 1 1 1 0 0 1 0 0 0 0.33 1.00 -5330 AURKA aurora kinase A 630708 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5331 ABI3BP ABI gene family, member 3 (NESH) binding protein 1654848 2 2 2 0 0 0 0 0 2 0 0.33 1.00 -5332 CCDC136 coiled-coil domain containing 136 1446471 2 2 2 1 1 1 0 0 0 0 0.33 1.00 -5333 ZNF75A zinc finger protein 75a 457821 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5334 SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 969384 1 1 1 1 0 0 0 0 1 0 0.33 1.00 -5335 COL4A3BP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 934401 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5336 NCKAP5 2893956 4 4 3 4 1 2 1 0 0 0 0.33 1.00 -5337 POTED 912093 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5338 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 589641 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5339 MSTN myostatin 577980 1 1 1 1 0 0 1 0 0 0 0.33 1.00 -5340 ALG11 asparagine-linked glycosylation 11 homolog (S. cerevisiae, alpha-1,2-mannosyltransferase) 753402 1 1 1 1 0 0 1 0 0 0 0.33 1.00 -5341 DUSP9 dual specificity phosphatase 9 398502 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5342 ELTD1 EGF, latrophilin and seven transmembrane domain containing 1 1068249 2 2 2 1 0 0 1 1 0 0 0.33 1.00 -5343 EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa 494832 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5344 MYH8 myosin, heavy chain 8, skeletal muscle, perinatal 3024762 4 4 4 2 1 2 0 1 0 0 0.33 1.00 -5345 LAMA1 laminin, alpha 1 4424082 6 6 6 4 1 3 1 0 1 0 0.33 1.00 -5346 BRF1 BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) 674310 1 1 1 1 1 0 0 0 0 0 0.33 1.00 -5347 SLC28A1 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 1011972 2 2 2 1 0 1 1 0 0 0 0.33 1.00 -5348 RPTN repetin 1198041 2 2 2 0 1 0 1 0 0 0 0.33 1.00 -5349 LETMD1 LETM1 domain containing 1 567333 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5350 VPS26A vacuolar protein sorting 26 homolog A (S. pombe) 513591 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5351 CYBB cytochrome b-245, beta polypeptide (chronic granulomatous disease) 894855 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5352 OR13F1 olfactory receptor, family 13, subfamily F, member 1 488748 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5353 PRRT3 proline-rich transmembrane protein 3 669240 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5354 RAE1 RAE1 RNA export 1 homolog (S. pombe) 583050 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5355 AIPL1 aryl hydrocarbon receptor interacting protein-like 1 575445 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5356 SPTBN2 spectrin, beta, non-erythrocytic 2 3286374 5 5 5 1 2 1 1 0 1 0 0.33 1.00 -5357 MBL2 mannose-binding lectin (protein C) 2, soluble (opsonic defect) 386841 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5358 PRMT7 protein arginine methyltransferase 7 902967 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5359 HNRNPR heterogeneous nuclear ribonucleoprotein R 989157 1 1 1 0 0 0 0 1 0 0 0.33 1.00 -5360 PCDHB12 protocadherin beta 12 1212237 2 2 2 0 0 0 1 1 0 0 0.33 1.00 -5361 SAMD9L sterile alpha motif domain containing 9-like 2412813 4 4 4 0 1 0 2 1 0 0 0.33 1.00 -5362 IPO5 importin 5 1702506 3 3 3 0 2 0 0 1 0 0 0.33 1.00 -5363 MCM4 minichromosome maintenance complex component 4 1309074 2 2 2 1 2 0 0 0 0 0 0.33 1.00 -5364 BTNL2 butyrophilin-like 2 (MHC class II associated) 705744 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5365 GRPR gastrin-releasing peptide receptor 591669 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5366 PI4K2B phosphatidylinositol 4-kinase type 2 beta 615498 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5367 DDX24 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 1324284 2 2 2 0 0 0 1 1 0 0 0.33 1.00 -5368 IDO1 522717 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5369 ANK3 ankyrin 3, node of Ranvier (ankyrin G) 6914973 10 9 10 0 2 1 4 3 0 0 0.33 1.00 -5370 TGM5 transglutaminase 5 1123005 2 2 2 1 1 0 1 0 0 0 0.33 1.00 -5371 EMR3 egf-like module containing, mucin-like, hormone receptor-like 3 1025661 2 2 2 0 2 0 0 0 0 0 0.33 1.00 -5372 BMS1 BMS1 homolog, ribosome assembly protein (yeast) 1996059 3 3 3 1 1 2 0 0 0 0 0.33 1.00 -5373 SLC16A13 solute carrier family 16, member 13 (monocarboxylic acid transporter 13) 621582 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5374 AMDHD2 amidohydrolase domain containing 2 575952 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5375 TAOK1 TAO kinase 1 1469286 2 2 2 0 0 0 2 0 0 0 0.33 1.00 -5376 SEPT14 septin 14 652509 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5377 ENPP7 ectonucleotide pyrophosphatase/phosphodiesterase 7 697632 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5378 UBASH3A ubiquitin associated and SH3 domain containing, A 924768 1 1 1 1 0 1 0 0 0 0 0.33 1.00 -5379 TLR10 toll-like receptor 10 1237080 1 1 1 1 0 0 0 0 1 0 0.33 1.00 -5380 TIAM2 T-cell lymphoma invasion and metastasis 2 2637414 4 4 4 1 2 1 0 0 1 0 0.33 1.00 -5381 WWC2 WW and C2 domain containing 2 1368900 2 2 2 0 2 0 0 0 0 0 0.33 1.00 -5382 ATP6V1C1 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 606879 1 1 1 0 0 0 0 1 0 0 0.33 1.00 -5383 KLHL23 kelch-like 23 (Drosophila) 856323 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5384 SLC6A13 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 909558 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5385 SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3 608907 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5386 PLBD1 804609 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5387 RIPK4 receptor-interacting serine-threonine kinase 4 916149 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5388 OR5B17 olfactory receptor, family 5, subfamily B, member 17 481143 1 1 1 1 0 0 1 0 0 0 0.33 1.00 -5389 L3MBTL3 l(3)mbt-like 3 (Drosophila) 1181817 2 2 2 0 0 0 2 0 0 0 0.33 1.00 -5390 ZNF280B zinc finger protein 280B 829452 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5391 SASS6 spindle assembly 6 homolog (C. elegans) 1035294 2 2 2 0 0 1 1 0 0 0 0.33 1.00 -5392 MTRF1L mitochondrial translational release factor 1-like 484185 1 1 1 1 0 0 1 0 0 0 0.33 1.00 -5393 CCDC62 coiled-coil domain containing 62 1072305 2 2 2 1 0 1 1 0 0 0 0.33 1.00 -5394 PDZD4 PDZ domain containing 4 376701 1 1 1 1 0 1 0 0 0 0 0.33 1.00 -5395 GTF2IRD2B GTF2I repeat domain containing 2B 1243164 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5396 RSPH10B radial spoke head 10 homolog B (Chlamydomonas) 1690845 2 2 2 0 1 0 0 0 1 0 0.33 1.00 -5397 RRP15 ribosomal RNA processing 15 homolog (S. cerevisiae) 440583 1 1 1 0 0 0 0 0 1 0 0.33 1.00 -5398 HEY2 hairy/enhancer-of-split related with YRPW motif 2 480129 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5399 TUBA3C tubulin, alpha 3c 696111 1 1 1 0 0 1 0 0 0 0 0.33 1.00 -5400 KLF7 Kruppel-like factor 7 (ubiquitous) 468975 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5401 RBM41 RNA binding motif protein 41 643890 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5402 CACNG4 calcium channel, voltage-dependent, gamma subunit 4 446160 1 1 1 0 1 0 0 0 0 0 0.33 1.00 -5403 DPYS dihydropyrimidinase 673296 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5404 TRIM60 tripartite motif-containing 60 719940 1 1 1 1 1 0 0 0 0 0 0.33 1.00 -5405 SUCLA2 succinate-CoA ligase, ADP-forming, beta subunit 680394 1 1 1 0 0 0 1 0 0 0 0.33 1.00 -5406 MKRN2 makorin, ring finger protein, 2 635271 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5407 IKZF4 IKAROS family zinc finger 4 (Eos) 859872 1 1 1 0 0 0 0 0 1 0 0.34 1.00 -5408 AMICA1 adhesion molecule, interacts with CXADR antigen 1 627666 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5409 NCKAP1L NCK-associated protein 1-like 1778556 3 3 3 0 1 2 0 0 0 0 0.34 1.00 -5410 SLC30A8 solute carrier family 30 (zinc transporter), member 8 578994 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5411 ZBTB5 zinc finger and BTB domain containing 5 1033266 2 2 2 0 1 1 0 0 0 0 0.34 1.00 -5412 SGPP1 sphingosine-1-phosphate phosphatase 1 486720 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5413 OLFML3 olfactomedin-like 3 625131 1 1 1 1 0 0 1 0 0 0 0.34 1.00 -5414 OR6K2 olfactory receptor, family 6, subfamily K, member 2 496353 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5415 RGL2 ral guanine nucleotide dissociation stimulator-like 2 1001832 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5416 RBM33 RNA binding motif protein 33 1363830 2 2 2 0 0 2 0 0 0 0 0.34 1.00 -5417 OR9K2 olfactory receptor, family 9, subfamily K, member 2 513084 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5418 PTPRG protein tyrosine phosphatase, receptor type, G 2075151 3 3 3 0 0 1 2 0 0 0 0.34 1.00 -5419 WIZ widely interspaced zinc finger motifs 890292 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5420 PABPC1L poly(A) binding protein, cytoplasmic 1-like 754416 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5421 PDGFRL platelet-derived growth factor receptor-like 554151 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5422 ZNF93 zinc finger protein 93 952653 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5423 PPM1H protein phosphatase 1H (PP2C domain containing) 677352 1 1 1 1 1 0 0 0 0 0 0.34 1.00 -5424 LCOR ligand dependent nuclear receptor corepressor 666198 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5425 COL16A1 collagen, type XVI, alpha 1 2181621 3 3 3 1 0 2 0 0 1 0 0.34 1.00 -5426 ABCA8 ATP-binding cassette, sub-family A (ABC1), member 8 2481258 4 4 4 2 2 1 1 0 0 0 0.34 1.00 -5427 C4BPA complement component 4 binding protein, alpha 931866 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5428 TMEM57 transmembrane protein 57 991185 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5429 TRPM4 transient receptor potential cation channel, subfamily M, member 4 1393743 2 2 2 2 1 0 0 0 1 0 0.34 1.00 -5430 ATP6V0D2 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 550095 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5431 DEPDC1 DEP domain containing 1 1259388 1 1 1 0 0 0 0 0 1 0 0.34 1.00 -5432 SUGT1 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 534378 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5433 KRT35 keratin 35 707772 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5434 EHD1 EH-domain containing 1 710307 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5435 BMI1 BMI1 polycomb ring finger oncogene 515619 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5436 KIAA0240 KIAA0240 1664988 2 2 2 1 0 0 1 0 1 0 0.34 1.00 -5437 PPAN-P2RY11 PPAN-P2RY11 973947 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5438 C4BPB complement component 4 binding protein, beta 396981 1 1 1 1 0 0 1 0 0 0 0.34 1.00 -5439 FCN2 ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin) 455286 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5440 KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 518661 1 1 1 2 1 0 0 0 0 0 0.34 1.00 -5441 EML5 echinoderm microtubule associated protein like 5 2924376 4 4 4 0 1 1 0 0 2 0 0.34 1.00 -5442 C3orf23 chromosome 3 open reading frame 23 802581 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5443 SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 2699775 4 4 4 0 1 1 1 0 1 0 0.34 1.00 -5444 KRBA1 KRAB-A domain containing 1 781794 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5445 APP amyloid beta (A4) precursor protein (peptidase nexin-II, Alzheimer disease) 1144806 2 2 2 0 0 0 0 1 1 0 0.34 1.00 -5446 TRIM50 tripartite motif-containing 50 474045 1 1 1 0 0 0 0 0 1 0 0.34 1.00 -5447 HCRTR1 hypocretin (orexin) receptor 1 545532 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5448 TGFBRAP1 transforming growth factor, beta receptor associated protein 1 1331889 2 2 2 0 1 1 0 0 0 0 0.34 1.00 -5449 SCN1A sodium channel, voltage-gated, type I, alpha subunit 3109938 4 4 4 1 0 2 0 1 1 0 0.34 1.00 -5450 MTO1 mitochondrial translation optimization 1 homolog (S. cerevisiae) 1078389 2 2 2 0 2 0 0 0 0 0 0.34 1.00 -5451 TPD52 tumor protein D52 394953 1 1 1 1 0 0 1 0 0 0 0.34 1.00 -5452 TMCO6 transmembrane and coiled-coil domains 6 676845 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5453 PXDNL peroxidasin homolog (Drosophila)-like 1763346 3 3 3 1 2 1 0 0 0 0 0.34 1.00 -5454 XPO6 exportin 6 1738503 2 2 2 1 0 0 0 1 1 0 0.34 1.00 -5455 CELF1 771654 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5456 DLX5 distal-less homeobox 5 444639 1 1 1 1 0 0 1 0 0 0 0.34 1.00 -5457 ATP2A1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 1573221 2 2 2 1 1 0 0 0 1 0 0.34 1.00 -5458 RPN1 ribophorin I 810693 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5459 FAM120C family with sequence similarity 120C 1370421 2 2 2 1 0 1 1 0 0 0 0.34 1.00 -5460 SOCS5 suppressor of cytokine signaling 5 818805 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5461 SPIC Spi-C transcription factor (Spi-1/PU.1 related) 388869 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5462 MAN2B1 mannosidase, alpha, class 2B, member 1 1406418 2 2 2 2 0 0 2 0 0 0 0.34 1.00 -5463 NR1D1 nuclear receptor subfamily 1, group D, member 1 709800 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5464 POLL polymerase (DNA directed), lambda 891813 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5465 ABCC6 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 1544829 2 2 2 2 1 0 0 1 0 0 0.34 1.00 -5466 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 575952 1 1 1 0 0 0 0 0 1 0 0.34 1.00 -5467 ITIH1 inter-alpha (globulin) inhibitor H1 1374477 2 2 2 0 0 1 1 0 0 0 0.34 1.00 -5468 KCNK18 potassium channel, subfamily K, member 18 589641 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5469 ZNF667 zinc finger protein 667 937443 1 1 1 0 0 0 0 0 1 0 0.34 1.00 -5470 CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1 733122 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5471 MMP9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) 849732 1 1 1 1 1 0 0 0 0 0 0.34 1.00 -5472 GPBP1L1 GC-rich promoter binding protein 1-like 1 742755 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5473 TEAD3 TEA domain family member 3 686478 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5474 ZNF28 zinc finger protein 28 1015014 2 2 2 2 0 1 1 0 0 0 0.34 1.00 -5475 AZGP1 alpha-2-glycoprotein 1, zinc-binding 462891 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5476 AHCY S-adenosylhomocysteine hydrolase 661128 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5477 CCDC14 coiled-coil domain containing 14 1215786 2 2 2 0 0 0 1 0 1 0 0.34 1.00 -5478 KIAA2026 KIAA2026 2909673 4 4 4 0 2 1 1 0 0 0 0.34 1.00 -5479 RBM42 RNA binding motif protein 42 524745 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5480 PCDHGB2 protocadherin gamma subfamily B, 2 1400841 2 2 2 2 0 0 1 0 1 0 0.34 1.00 -5481 SULT1A1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 502437 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5482 CSPG4 chondroitin sulfate proteoglycan 4 1680198 2 2 2 6 0 1 0 0 1 0 0.34 1.00 -5483 PI16 peptidase inhibitor 16 589134 1 1 1 1 0 0 0 1 0 0 0.34 1.00 -5484 ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 1298427 2 2 2 0 0 1 1 0 0 0 0.34 1.00 -5485 ENOX2 ecto-NOX disulfide-thiol exchanger 2 955188 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5486 UPRT uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) 485706 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5487 EGFL6 EGF-like-domain, multiple 6 868491 1 1 1 1 0 0 0 0 1 0 0.34 1.00 -5488 FAM83F family with sequence similarity 83, member F 402051 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5489 PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) 6351696 8 8 8 2 1 3 1 1 2 0 0.34 1.00 -5490 ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 750360 1 1 1 0 0 0 0 1 0 0 0.34 1.00 -5491 ABI1 abl-interactor 1 798525 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5492 TSSK1B testis-specific serine kinase 1B 561756 1 1 1 1 0 0 1 0 0 0 0.34 1.00 -5493 P2RY2 purinergic receptor P2Y, G-protein coupled, 2 576966 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5494 ZNF648 zinc finger protein 648 542490 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5495 SYN1 synapsin I 597753 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5496 GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2 799539 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5497 SPDYE3 557700 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5498 PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2 571389 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5499 ZNF674 zinc finger protein 674 893334 2 1 2 0 0 0 1 1 0 0 0.34 1.00 -5500 BAT2L2 3996174 4 4 4 0 1 1 0 0 2 0 0.34 1.00 -5501 DHRS7 dehydrogenase/reductase (SDR family) member 7 461877 1 1 1 1 1 0 0 0 0 0 0.34 1.00 -5502 SUSD5 sushi domain containing 5 909558 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5503 KCNH4 potassium voltage-gated channel, subfamily H (eag-related), member 4 1408953 2 2 2 0 1 1 0 0 0 0 0.34 1.00 -5504 ZNF205 zinc finger protein 205 632736 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5505 CEACAM20 carcinoembryonic antigen-related cell adhesion molecule 20 932373 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5506 UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 813735 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5507 SRP72 signal recognition particle 72kDa 1003353 1 1 1 2 0 0 0 0 1 0 0.34 1.00 -5508 GPATCH4 G patch domain containing 4 596232 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5509 MYH4 myosin, heavy chain 4, skeletal muscle 3027804 4 4 4 1 0 2 0 1 1 0 0.34 1.00 -5510 CASZ1 castor zinc finger 1 1499706 2 2 2 2 0 1 1 0 0 0 0.34 1.00 -5511 ARHGAP25 Rho GTPase activating protein 25 1026675 2 2 2 0 1 1 0 0 0 0 0.34 1.00 -5512 RBM5 RNA binding motif protein 5 1289808 1 1 1 0 0 0 0 0 1 0 0.34 1.00 -5513 FBXL13 F-box and leucine-rich repeat protein 13 1155960 2 2 2 0 0 2 0 0 0 0 0.34 1.00 -5514 PXN paxillin 685464 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5515 PENK proenkephalin 373152 1 1 1 2 1 0 0 0 0 0 0.34 1.00 -5516 PVRL1 poliovirus receptor-related 1 (herpesvirus entry mediator C) 984087 1 1 1 0 0 0 0 0 1 0 0.34 1.00 -5517 CRELD1 cysteine-rich with EGF-like domains 1 644397 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5518 ATF4 activating transcription factor 4 (tax-responsive enhancer element B67) 539448 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5519 LRRN2 leucine rich repeat neuronal 2 1087008 2 2 2 1 0 1 0 1 0 0 0.34 1.00 -5520 TACR2 tachykinin receptor 2 536406 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5521 CSPP1 centrosome and spindle pole associated protein 1 1972737 3 3 3 0 0 0 3 0 0 0 0.34 1.00 -5522 DCAF8 933894 1 1 1 1 0 1 0 0 0 0 0.34 1.00 -5523 METTL14 700674 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5524 ZNF780B zinc finger protein 780B 1276626 2 2 2 0 0 2 0 0 0 0 0.34 1.00 -5525 EMILIN2 elastin microfibril interfacer 2 1386645 2 2 2 1 1 1 0 0 0 0 0.34 1.00 -5526 GNAQ guanine nucleotide binding protein (G protein), q polypeptide 490776 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5527 CDK7 cyclin-dependent kinase 7 516633 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5528 SGPP2 sphingosine-1-phosphate phosphotase 2 505479 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5529 PIGA phosphatidylinositol glycan anchor biosynthesis, class A (paroxysmal nocturnal hemoglobinuria) 747825 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5530 IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 451230 1 1 1 0 0 0 1 0 0 0 0.34 1.00 -5531 ALPK3 alpha-kinase 3 2318004 3 3 2 1 0 3 0 0 0 0 0.34 1.00 -5532 CAP2 CAP, adenylate cyclase-associated protein, 2 (yeast) 751374 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5533 FCAMR Fc receptor, IgA, IgM, high affinity 469482 1 1 1 0 0 1 0 0 0 0 0.34 1.00 -5534 CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1 694590 1 1 1 0 1 0 0 0 0 0 0.34 1.00 -5535 TIGD2 tigger transposable element derived 2 802074 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5536 MICALCL MICAL C-terminal like 1025154 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5537 CD36 CD36 molecule (thrombospondin receptor) 743769 1 1 1 1 0 1 0 0 0 0 0.35 1.00 -5538 MAMDC2 MAM domain containing 2 1013493 1 1 1 1 0 0 0 0 1 0 0.35 1.00 -5539 PARD3 par-3 partitioning defective 3 homolog (C. elegans) 2057913 3 3 3 2 2 0 1 0 0 0 0.35 1.00 -5540 TRAK1 trafficking protein, kinesin binding 1 1638117 2 2 2 0 1 0 0 0 1 0 0.35 1.00 -5541 PDGFRB platelet-derived growth factor receptor, beta polypeptide 1618344 2 2 2 1 0 2 0 0 0 0 0.35 1.00 -5542 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 805116 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5543 MAP4K1 mitogen-activated protein kinase kinase kinase kinase 1 941499 1 1 1 1 0 1 0 0 0 0 0.35 1.00 -5544 OR5M3 olfactory receptor, family 5, subfamily M, member 3 470496 1 1 1 1 0 0 1 0 0 0 0.35 1.00 -5545 PAFAH1B1 platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa 605358 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5546 SWAP70 835029 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5547 OR51B4 olfactory receptor, family 51, subfamily B, member 4 475059 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5548 PITRM1 pitrilysin metallopeptidase 1 1439880 2 2 2 0 0 2 0 0 0 0 0.35 1.00 -5549 PDCD11 programmed cell death 11 2809794 4 4 4 0 0 1 2 0 1 0 0.35 1.00 -5550 EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa 471003 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5551 GBF1 golgi-specific brefeldin A resistance factor 1 2908152 4 4 4 0 0 1 0 2 1 0 0.35 1.00 -5552 FAM65C 1291836 2 2 2 1 1 0 0 1 0 0 0.35 1.00 -5553 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 507000 1 1 1 0 0 0 0 1 0 0 0.35 1.00 -5554 PKP1 plakophilin 1 (ectodermal dysplasia/skin fragility syndrome) 1046955 2 2 2 0 1 0 1 0 0 0 0.35 1.00 -5555 KRT6C keratin 6C 769626 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5556 EPC1 enhancer of polycomb homolog 1 (Drosophila) 1302990 2 2 2 0 0 0 1 0 1 0 0.35 1.00 -5557 EFTUD2 elongation factor Tu GTP binding domain containing 2 1533168 2 2 2 1 1 1 0 0 0 0 0.35 1.00 -5558 ZNF334 zinc finger protein 334 1043913 2 2 2 0 1 0 1 0 0 0 0.35 1.00 -5559 UBE3B ubiquitin protein ligase E3B 1677156 2 2 2 0 0 0 2 0 0 0 0.35 1.00 -5560 FAM164C 699153 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5561 CCDC121 coiled-coil domain containing 121 477087 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5562 XPOT exportin, tRNA (nuclear export receptor for tRNAs) 1513395 2 2 2 1 0 0 1 1 0 0 0.35 1.00 -5563 KBTBD4 kelch repeat and BTB (POZ) domain containing 4 810186 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5564 STK10 serine/threonine kinase 10 1361802 2 2 2 0 1 0 0 1 0 0 0.35 1.00 -5565 EPS8 epidermal growth factor receptor pathway substrate 8 1292343 3 2 3 0 1 0 0 1 1 0 0.35 1.00 -5566 XRCC4 X-ray repair complementing defective repair in Chinese hamster cells 4 526773 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5567 TOX3 TOX high mobility group box family member 3 754416 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5568 FBXO39 F-box protein 39 679887 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5569 TPK1 thiamin pyrophosphokinase 1 363519 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5570 DDX31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 1140243 2 2 2 0 0 1 1 0 0 0 0.35 1.00 -5571 EPHA3 EPH receptor A3 1538745 2 2 2 0 1 0 0 0 1 0 0.35 1.00 -5572 OR4K2 olfactory receptor, family 4, subfamily K, member 2 481143 1 1 1 1 0 1 0 0 0 0 0.35 1.00 -5573 DSP desmoplakin 4328766 6 6 6 2 2 2 0 1 1 0 0.35 1.00 -5574 C6orf25 chromosome 6 open reading frame 25 404586 1 1 1 2 0 1 0 0 0 0 0.35 1.00 -5575 OR10H4 olfactory receptor, family 10, subfamily H, member 4 484185 1 1 1 2 0 1 0 0 0 0 0.35 1.00 -5576 SENP1 SUMO1/sentrin specific peptidase 1 968877 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5577 FOXD4 forkhead box D4 656058 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5578 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2422953 3 3 3 0 0 1 0 0 2 0 0.35 1.00 -5579 MTSS1 metastasis suppressor 1 1088529 2 2 2 0 2 0 0 0 0 0 0.35 1.00 -5580 ZBTB33 zinc finger and BTB domain containing 33 1025661 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5581 TBX5 T-box 5 836043 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5582 LPPR5 429429 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5583 OR7D2 olfactory receptor, family 7, subfamily D, member 2 478101 1 1 1 1 0 0 1 0 0 0 0.35 1.00 -5584 MAP2K3 mitogen-activated protein kinase kinase 3 457314 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5585 AUP1 ancient ubiquitous protein 1 574431 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5586 ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10 1261416 2 2 2 1 0 2 0 0 0 0 0.35 1.00 -5587 B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 499395 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5588 C2orf39 chromosome 2 open reading frame 39 1080924 2 2 2 1 0 1 1 0 0 0 0.35 1.00 -5589 ATP8B4 ATPase, class I, type 8B, member 4 1869309 3 3 3 0 0 2 1 0 0 0 0.35 1.00 -5590 C19orf44 chromosome 19 open reading frame 44 921726 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5591 EPB41L2 erythrocyte membrane protein band 4.1-like 2 1566630 2 2 2 0 0 0 1 0 1 0 0.35 1.00 -5592 ADCY4 adenylate cyclase 4 1336452 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5593 PON3 paraoxonase 3 558207 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5594 GBP5 guanylate binding protein 5 913107 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5595 ANAPC7 anaphase promoting complex subunit 7 831987 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5596 ADAM21 ADAM metallopeptidase domain 21 1101711 2 2 2 2 1 0 1 0 0 0 0.35 1.00 -5597 USP46 ubiquitin specific peptidase 46 513084 1 1 1 1 0 1 0 0 0 0 0.35 1.00 -5598 NUP214 nucleoporin 214kDa 3228576 4 4 4 0 0 0 1 1 2 0 0.35 1.00 -5599 FLNA filamin A, alpha (actin binding protein 280) 3130725 4 4 4 1 1 2 0 0 1 0 0.35 1.00 -5600 SATB1 SATB homeobox 1 1182324 2 2 2 0 2 0 0 0 0 0 0.35 1.00 -5601 GALNT13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) 869505 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5602 ACOT4 acyl-CoA thioesterase 4 414219 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5603 PRPS2 phosphoribosyl pyrophosphate synthetase 2 440076 1 1 1 1 1 0 0 0 0 0 0.35 1.00 -5604 ABCB6 ATP-binding cassette, sub-family B (MDR/TAP), member 6 1023633 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5605 CAMK1 calcium/calmodulin-dependent protein kinase I 586599 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5606 GPR12 G protein-coupled receptor 12 511563 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5607 PPP1R15B protein phosphatase 1, regulatory (inhibitor) subunit 15B 1090050 2 2 2 1 0 1 0 1 0 0 0.35 1.00 -5608 BEND5 443625 1 1 1 0 0 0 0 1 0 0 0.35 1.00 -5609 ZNF33B zinc finger protein 33B 1192971 2 2 2 0 1 0 0 1 0 0 0.35 1.00 -5610 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 722982 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5611 CLIC1 chloride intracellular channel 1 380250 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5612 PLA2G4D phospholipase A2, group IVD (cytosolic) 1047462 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5613 ARNTL aryl hydrocarbon receptor nuclear translocator-like 992199 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5614 QPCTL glutaminyl-peptide cyclotransferase-like 489255 1 1 1 1 0 0 1 0 0 0 0.35 1.00 -5615 ZNF678 zinc finger protein 678 758979 1 1 1 0 0 0 0 1 0 0 0.35 1.00 -5616 BFAR bifunctional apoptosis regulator 700167 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5617 C16orf93 385827 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5618 COG1 component of oligomeric golgi complex 1 1358253 2 2 2 0 0 2 0 0 0 0 0.35 1.00 -5619 HADHB hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit 752895 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5620 C7orf31 chromosome 7 open reading frame 31 917163 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5621 SGSM2 small G protein signaling modulator 2 1201083 2 2 2 0 0 0 2 0 0 0 0.35 1.00 -5622 MYO9A myosin IXA 3958149 5 5 5 1 1 2 0 1 1 0 0.35 1.00 -5623 OR5D13 olfactory receptor, family 5, subfamily D, member 13 481143 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5624 RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 1978821 3 3 3 2 1 2 0 0 0 0 0.35 1.00 -5625 CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 395460 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5626 SH3D19 SH3 domain containing 19 1233531 2 2 2 0 0 2 0 0 0 0 0.35 1.00 -5627 VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae) 481143 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5628 OR1J2 olfactory receptor, family 1, subfamily J, member 2 479622 1 1 1 0 0 1 0 0 0 0 0.35 1.00 -5629 ZNF518B zinc finger protein 518B 1637103 2 2 2 0 1 0 0 1 0 0 0.35 1.00 -5630 AP3M1 adaptor-related protein complex 3, mu 1 subunit 653523 1 1 1 1 1 0 0 0 0 0 0.35 1.00 -5631 ACAD11 acyl-Coenzyme A dehydrogenase family, member 11 1228461 2 2 2 0 1 0 1 0 0 0 0.35 1.00 -5632 TADA2A 753909 1 1 1 1 0 0 0 1 0 0 0.35 1.00 -5633 MMS19 MMS19 nucleotide excision repair homolog (S. cerevisiae) 1533675 2 2 2 0 0 1 0 0 1 0 0.35 1.00 -5634 PRCP prolylcarboxypeptidase (angiotensinase C) 808158 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5635 TRIM26 tripartite motif-containing 26 835536 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5636 PPAT phosphoribosyl pyrophosphate amidotransferase 810186 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5637 CRMP1 collapsin response mediator protein 1 812721 1 1 1 1 0 1 0 0 0 0 0.35 1.00 -5638 DYNC2LI1 dynein, cytoplasmic 2, light intermediate chain 1 611949 1 1 1 0 0 0 0 0 1 0 0.35 1.00 -5639 DLGAP1 discs, large (Drosophila) homolog-associated protein 1 1318707 2 2 2 1 1 0 1 0 0 0 0.35 1.00 -5640 FAM45A family with sequence similarity 45, member A 532857 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5641 IGBP1 immunoglobulin (CD79A) binding protein 1 529308 1 1 1 0 1 0 0 0 0 0 0.35 1.00 -5642 SYVN1 synovial apoptosis inhibitor 1, synoviolin 815256 1 1 1 0 0 0 1 0 0 0 0.35 1.00 -5643 COL17A1 collagen, type XVII, alpha 1 2172495 3 3 3 1 0 3 0 0 0 0 0.36 1.00 -5644 FURIN furin (paired basic amino acid cleaving enzyme) 986115 1 1 1 1 0 0 0 1 0 0 0.36 1.00 -5645 ARHGAP20 Rho GTPase activating protein 20 1788189 3 3 3 0 2 1 0 0 0 0 0.36 1.00 -5646 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit 813228 1 1 1 1 0 1 0 0 0 0 0.36 1.00 -5647 THAP9 THAP domain containing 9 1342536 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5648 PER1 period homolog 1 (Drosophila) 1444950 2 2 2 2 0 2 0 0 0 0 0.36 1.00 -5649 MAB21L2 mab-21-like 2 (C. elegans) 549588 1 1 1 1 0 0 0 1 0 0 0.36 1.00 -5650 MAP1S microtubule-associated protein 1S 989157 1 1 1 1 1 0 0 0 0 0 0.36 1.00 -5651 CTRC chymotrypsin C (caldecrin) 413205 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5652 AADAC arylacetamide deacetylase (esterase) 618540 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5653 GRIA3 glutamate receptor, ionotrophic, AMPA 3 1452048 2 2 2 0 0 0 0 1 1 0 0.36 1.00 -5654 INTS10 integrator complex subunit 10 1048476 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5655 XPNPEP2 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound 1025154 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5656 OR4E2 olfactory receptor, family 4, subfamily E, member 2 479622 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5657 ACLY ATP citrate lyase 1713660 2 2 2 0 0 2 0 0 0 0 0.36 1.00 -5658 PAQR3 progestin and adipoQ receptor family member III 486213 1 1 1 1 0 0 1 0 0 0 0.36 1.00 -5659 HSF5 heat shock transcription factor family member 5 639327 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5660 SLC30A5 solute carrier family 30 (zinc transporter), member 5 1198041 2 2 2 2 0 1 1 0 0 0 0.36 1.00 -5661 SIRT3 sirtuin (silent mating type information regulation 2 homolog) 3 (S. cerevisiae) 478101 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5662 NLRP1 NLR family, pyrin domain containing 1 2107092 3 3 3 0 1 0 1 1 0 0 0.36 1.00 -5663 WDR5 WD repeat domain 5 535392 1 1 1 1 0 0 0 0 1 0 0.36 1.00 -5664 NSUN4 NOL1/NOP2/Sun domain family, member 4 582036 1 1 1 0 0 0 0 1 0 0 0.36 1.00 -5665 KANK3 KN motif and ankyrin repeat domains 3 379743 1 1 1 1 1 0 0 0 0 0 0.36 1.00 -5666 FBXO32 F-box protein 32 500916 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5667 USP1 ubiquitin specific peptidase 1 1211730 2 2 2 0 1 0 1 0 0 0 0.36 1.00 -5668 JAK2 Janus kinase 2 (a protein tyrosine kinase) 1769937 2 2 2 0 0 0 0 0 2 0 0.36 1.00 -5669 ARSH arylsulfatase family, member H 874575 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5670 STK25 serine/threonine kinase 25 (STE20 homolog, yeast) 652509 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5671 FBXO5 F-box protein 5 637299 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5672 ZSCAN5B 739206 1 1 1 1 0 1 0 0 0 0 0.36 1.00 -5673 CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) 1100697 2 2 2 0 0 1 0 0 1 0 0.36 1.00 -5674 INPP5D inositol polyphosphate-5-phosphatase, 145kDa 1244178 2 2 2 1 1 1 0 0 0 0 0.36 1.00 -5675 EEFSEC eukaryotic elongation factor, selenocysteine-tRNA-specific 759993 1 1 1 1 0 1 0 0 0 0 0.36 1.00 -5676 FAM83D family with sequence similarity 83, member D 665691 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5677 AKAP3 A kinase (PRKA) anchor protein 3 1305018 2 2 2 0 0 0 1 0 1 0 0.36 1.00 -5678 MCM6 minichromosome maintenance complex component 6 1255332 2 2 2 0 0 1 0 0 1 0 0.36 1.00 -5679 B4GALT3 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 611442 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5680 SPOP speckle-type POZ protein 588627 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5681 CDKN2AIP CDKN2A interacting protein 749853 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5682 KIR2DL4 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4 407121 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5683 OR6C2 olfactory receptor, family 6, subfamily C, member 2 478101 1 1 1 1 0 0 0 0 1 0 0.36 1.00 -5684 C9orf5 chromosome 9 open reading frame 5 1079403 2 2 2 1 0 1 1 0 0 0 0.36 1.00 -5685 LEFTY2 left-right determination factor 2 382785 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5686 CNTNAP1 contactin associated protein 1 1991496 3 3 3 1 1 1 0 0 1 0 0.36 1.00 -5687 FOXN3 forkhead box N3 758979 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5688 PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 495846 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5689 BSDC1 BSD domain containing 1 594204 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5690 INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa 1448499 2 2 2 0 0 0 1 0 1 0 0.36 1.00 -5691 SLC7A13 solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 724503 1 1 1 1 1 0 0 0 0 0 0.36 1.00 -5692 KLHDC3 kelch domain containing 3 602823 1 1 1 0 0 0 0 1 0 0 0.36 1.00 -5693 ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial 920205 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5694 HNRNPF 634764 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5695 LACTB lactamase, beta 664677 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5696 CCDC19 coiled-coil domain containing 19 863928 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5697 FPR3 formyl peptide receptor 3 540462 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5698 KIAA1683 KIAA1683 1398813 2 2 2 0 0 2 0 0 0 0 0.36 1.00 -5699 FANCI Fanconi anemia, complementation group I 2003157 3 3 3 0 0 0 1 1 1 0 0.36 1.00 -5700 TROVE2 TROVE domain family, member 2 855816 1 1 1 1 0 1 0 0 0 0 0.36 1.00 -5701 MRPS5 mitochondrial ribosomal protein S5 648453 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5702 ERV3 endogenous retroviral sequence 3 (includes zinc finger protein H-plk/HPF9) 787371 1 1 1 0 0 0 0 1 0 0 0.36 1.00 -5703 OLFM4 olfactomedin 4 787371 1 1 1 1 0 1 0 0 0 0 0.36 1.00 -5704 KRT15 keratin 15 711321 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5705 EIF2C1 eukaryotic translation initiation factor 2C, 1 1343550 2 2 2 1 2 0 0 0 0 0 0.36 1.00 -5706 FES feline sarcoma oncogene 941499 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5707 UBQLN1 ubiquilin 1 826410 1 1 1 1 0 0 0 0 1 0 0.36 1.00 -5708 ZXDA zinc finger, X-linked, duplicated A 742755 1 1 1 1 0 1 0 0 0 0 0.36 1.00 -5709 FAM73A family with sequence similarity 73, member A 952146 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5710 NDUFS2 NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) 743769 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5711 DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 6446505 8 8 8 1 0 3 2 0 3 0 0.36 1.00 -5712 BMP10 bone morphogenetic protein 10 650481 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5713 ZNF621 zinc finger protein 621 617019 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5714 ACO2 aconitase 2, mitochondrial 1211223 2 2 2 0 1 0 1 0 0 0 0.36 1.00 -5715 KIAA1841 KIAA1841 1115400 2 2 2 0 0 0 2 0 0 0 0.36 1.00 -5716 ZNF189 zinc finger protein 189 940992 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5717 LAT linker for activation of T cells 441090 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5718 ZNF618 zinc finger protein 618 1208688 2 2 2 0 1 1 0 0 0 0 0.36 1.00 -5719 ZNF488 zinc finger protein 488 519675 1 1 1 2 1 0 0 0 0 0 0.36 1.00 -5720 ZBTB22 zinc finger and BTB domain containing 22 967863 1 1 1 0 0 1 0 0 0 0 0.36 1.00 -5721 PCDH15 protocadherin 15 3882606 5 5 5 3 1 2 0 0 2 0 0.36 1.00 -5722 NR1D2 nuclear receptor subfamily 1, group D, member 2 888264 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5723 ARHGAP6 Rho GTPase activating protein 6 1068756 1 1 1 2 0 0 0 1 0 0 0.36 1.00 -5724 FASLG Fas ligand (TNF superfamily, member 6) 435513 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5725 IPMK inositol polyphosphate multikinase 548067 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5726 KRT86 keratin 86 518661 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5727 OR2L3 olfactory receptor, family 2, subfamily L, member 3 478101 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5728 MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 2389491 3 3 3 0 1 2 0 0 0 0 0.36 1.00 -5729 ANKRD42 ankyrin repeat domain 42 613470 1 1 1 0 1 0 0 0 0 0 0.36 1.00 -5730 MFSD6L 809172 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5731 NOS2 1211730 2 2 2 1 0 2 0 0 0 0 0.36 1.00 -5732 TM9SF2 transmembrane 9 superfamily member 2 1044420 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5733 SLC29A3 solute carrier family 29 (nucleoside transporters), member 3 735657 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5734 RAB40AL RAB40A, member RAS oncogene family-like 426387 1 1 1 0 0 0 1 0 0 0 0.36 1.00 -5735 CCDC99 coiled-coil domain containing 99 944034 1 1 1 0 0 0 0 0 1 0 0.36 1.00 -5736 OPTN optineurin 905502 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5737 FST follistatin 494832 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5738 ZNF584 zinc finger protein 584 638820 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5739 FAM190A 996255 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5740 OGT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1633554 2 2 2 0 1 0 0 0 1 0 0.37 1.00 -5741 SLC27A3 solute carrier family 27 (fatty acid transporter), member 3 863421 1 1 1 1 0 0 0 0 1 0 0.37 1.00 -5742 KLHL20 kelch-like 20 (Drosophila) 950118 1 1 1 1 0 1 0 0 0 0 0.37 1.00 -5743 APPL2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 1024647 1 1 1 0 0 0 0 1 0 0 0.37 1.00 -5744 HEXB hexosaminidase B (beta polypeptide) 735657 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5745 PPP1R8 protein phosphatase 1, regulatory (inhibitor) subunit 8 519168 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5746 CEP350 centrosomal protein 350kDa 4653246 6 6 6 0 0 2 2 0 2 0 0.37 1.00 -5747 FAM171B 1228461 2 2 2 1 0 1 1 0 0 0 0.37 1.00 -5748 OR2AE1 olfactory receptor, family 2, subfamily AE, member 1 494832 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5749 KIAA1755 KIAA1755 1825707 3 2 3 2 0 1 0 0 0 2 0.37 1.00 -5750 RIMBP3 RIMS binding protein 3 864435 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5751 MEIS2 Meis homeobox 2 752895 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5752 LIN54 lin-54 homolog (C. elegans) 1165086 2 2 2 0 0 0 2 0 0 0 0.37 1.00 -5753 MYO1A myosin IA 1642680 2 2 2 0 0 0 1 0 1 0 0.37 1.00 -5754 CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 542997 1 1 1 2 1 0 0 0 0 0 0.37 1.00 -5755 UCHL5 ubiquitin carboxyl-terminal hydrolase L5 496860 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5756 TM6SF2 transmembrane 6 superfamily member 2 534885 1 1 1 1 1 0 0 0 0 0 0.37 1.00 -5757 ZNF569 zinc finger protein 569 1053039 1 1 1 0 0 0 0 1 0 0 0.37 1.00 -5758 ZNF430 zinc finger protein 430 878631 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5759 CXorf66 556686 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5760 OR1A1 olfactory receptor, family 1, subfamily A, member 1 472524 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5761 CPNE5 copine V 775710 1 1 1 1 0 0 0 1 0 0 0.37 1.00 -5762 PLA2G4E phospholipase A2, group IVE 1078389 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5763 SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 1084473 1 1 1 1 0 0 0 0 1 0 0.37 1.00 -5764 TCF20 transcription factor 20 (AR1) 2986737 4 4 4 0 1 1 0 1 1 0 0.37 1.00 -5765 TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2 590655 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5766 CASKIN2 CASK interacting protein 2 652002 1 1 1 2 0 1 0 0 0 0 0.37 1.00 -5767 AGXT2 alanine-glyoxylate aminotransferase 2 763035 1 1 1 1 1 0 0 0 0 0 0.37 1.00 -5768 CLN5 ceroid-lipofuscinosis, neuronal 5 464412 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5769 TRUB1 TruB pseudouridine (psi) synthase homolog 1 (E. coli) 439062 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5770 LHX4 LIM homeobox 4 584064 1 1 1 1 0 1 0 0 0 0 0.37 1.00 -5771 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 1811004 2 2 2 1 0 0 1 0 1 0 0.37 1.00 -5772 EFNB2 ephrin-B2 509028 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5773 KIAA0427 KIAA0427 804609 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5774 CHRNB4 cholinergic receptor, nicotinic, beta 4 741234 1 1 1 1 0 1 0 0 0 0 0.37 1.00 -5775 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 433992 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5776 KIAA1919 KIAA1919 781794 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5777 AZI2 5-azacytidine induced 2 611949 1 1 1 1 0 1 0 0 0 0 0.37 1.00 -5778 CTSG cathepsin G 399009 1 1 1 1 1 0 0 0 0 0 0.37 1.00 -5779 UBA3 ubiquitin-like modifier activating enzyme 3 715377 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5780 CD14 CD14 molecule 575952 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5781 NCDN neurochondrin 1031745 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5782 DNAJC6 DnaJ (Hsp40) homolog, subfamily C, member 6 1428726 2 2 2 0 1 0 0 0 1 0 0.37 1.00 -5783 LTB4R2 leukotriene B4 receptor 2 411684 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5784 IVNS1ABP influenza virus NS1A binding protein 1004367 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5785 ZDHHC2 zinc finger, DHHC-type containing 2 441090 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5786 CSE1L CSE1 chromosome segregation 1-like (yeast) 1527084 2 2 2 0 1 0 0 0 1 0 0.37 1.00 -5787 EXT2 exostoses (multiple) 2 1184352 2 2 2 0 1 1 0 0 0 0 0.37 1.00 -5788 SLC22A11 solute carrier family 22 (organic anion/urate transporter), member 11 764049 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5789 PIK3CG phosphoinositide-3-kinase, catalytic, gamma polypeptide 1681212 2 2 2 1 0 1 1 0 0 0 0.37 1.00 -5790 ADRA2B adrenergic, alpha-2B-, receptor 498381 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5791 RINL 512070 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5792 LIPN lipase, family member N 602316 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5793 ENC1 ectodermal-neural cortex (with BTB-like domain) 899418 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5794 VPS33B vacuolar protein sorting 33 homolog B (yeast) 935922 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5795 C2orf71 1905813 3 3 3 0 0 3 0 0 0 0 0.37 1.00 -5796 KIAA1324L KIAA1324-like 1178268 3 2 3 0 1 0 1 0 1 0 0.37 1.00 -5797 MLL myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) 5890326 5 5 5 1 1 0 0 1 3 0 0.37 1.00 -5798 FAM63A family with sequence similarity 63, member A 741234 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5799 SLC22A9 solute carrier family 22 (organic anion transporter), member 9 862914 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5800 PARS2 prolyl-tRNA synthetase 2, mitochondrial (putative) 726024 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5801 C20orf117 chromosome 20 open reading frame 117 1213758 2 2 2 0 1 0 1 0 0 0 0.37 1.00 -5802 FAM129A family with sequence similarity 129, member A 1411488 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5803 EIF2A eukaryotic translation initiation factor 2A, 65kDa 828945 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5804 CNTN6 contactin 6 1609725 2 2 2 0 1 0 1 0 0 0 0.37 1.00 -5805 BSCL2 Bernardinelli-Seip congenital lipodystrophy 2 (seipin) 677352 2 1 2 0 0 2 0 0 0 0 0.37 1.00 -5806 SNRK SNF related kinase 1175226 2 2 2 0 1 0 0 1 0 0 0.37 1.00 -5807 PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 1915953 3 3 3 1 2 1 0 0 0 0 0.37 1.00 -5808 FEM1B fem-1 homolog b (C. elegans) 932373 1 1 1 1 1 0 0 0 0 0 0.37 1.00 -5809 TAS2R19 taste receptor, type 2, member 19 458328 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5810 DOCK6 dedicator of cytokinesis 6 2646033 3 3 3 1 0 1 0 0 2 0 0.37 1.00 -5811 NCAPD3 non-SMC condensin II complex, subunit D3 2257671 3 3 3 1 0 2 0 0 1 0 0.37 1.00 -5812 GSTCD glutathione S-transferase, C-terminal domain containing 986622 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5813 MBNL2 muscleblind-like 2 (Drosophila) 610935 1 1 1 0 0 0 0 1 0 0 0.37 1.00 -5814 CD200R1L 425880 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5815 HAUS4 571896 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5816 SF3B4 splicing factor 3b, subunit 4, 49kDa 533871 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5817 TXK TXK tyrosine kinase 833508 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5818 PTGDR prostaglandin D2 receptor (DP) 512577 1 1 1 1 0 0 1 0 0 0 0.37 1.00 -5819 RPP40 ribonuclease P/MRP 40kDa subunit 527787 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5820 RNF6 ring finger protein (C3H2C3 type) 6 1049490 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5821 NMUR2 neuromedin U receptor 2 640848 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5822 BAZ1B bromodomain adjacent to zinc finger domain, 1B 2239419 3 3 3 0 0 2 0 0 1 0 0.37 1.00 -5823 SNX32 sorting nexin 32 620568 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5824 SLC35F4 solute carrier family 35, member F4 810186 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5825 CRHR2 corticotropin releasing hormone receptor 2 432978 1 1 1 1 0 0 1 0 0 0 0.37 1.00 -5826 TNKS1BP1 tankyrase 1 binding protein 1, 182kDa 2449824 3 3 3 0 0 1 0 1 1 0 0.37 1.00 -5827 FAH fumarylacetoacetate hydrolase (fumarylacetoacetase) 667212 1 1 1 1 0 1 0 0 0 0 0.37 1.00 -5828 XDH xanthine dehydrogenase 2066532 3 3 3 0 2 0 1 0 0 0 0.37 1.00 -5829 MAP7 microtubule-associated protein 7 1058616 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5830 ZNF471 zinc finger protein 471 961779 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5831 C1orf175 chromosome 1 open reading frame 175 2057913 3 3 3 2 1 1 0 1 0 0 0.37 1.00 -5832 ZNF141 zinc finger protein 141 730587 1 1 1 0 0 0 0 1 0 0 0.37 1.00 -5833 CADM4 cell adhesion molecule 4 563784 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5834 ACPP acid phosphatase, prostate 671268 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5835 WLS 912600 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5836 TCTE1 t-complex-associated-testis-expressed 1 771654 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5837 RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 947583 1 1 1 1 0 0 0 1 0 0 0.37 1.00 -5838 GSN gelsolin (amyloidosis, Finnish type) 1069263 1 1 1 1 0 0 1 0 0 0 0.37 1.00 -5839 SLC18A1 solute carrier family 18 (vesicular monoamine), member 1 785850 1 1 1 1 1 0 0 0 0 0 0.37 1.00 -5840 AGBL2 ATP/GTP binding protein-like 2 1350141 2 2 2 0 0 1 1 0 0 0 0.37 1.00 -5841 SEL1L3 1492101 2 2 2 0 0 0 2 0 0 0 0.37 1.00 -5842 RAF1 v-raf-1 murine leukemia viral oncogene homolog 1 1019577 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5843 FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial 699660 1 1 1 0 0 0 0 1 0 0 0.37 1.00 -5844 THSD7A thrombospondin, type I, domain containing 7A 2477202 3 3 3 1 0 2 1 0 0 0 0.37 1.00 -5845 FCHSD1 FCH and double SH3 domains 1 867984 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5846 SHKBP1 SH3KBP1 binding protein 1 1042392 1 1 1 2 0 1 0 0 0 0 0.37 1.00 -5847 SLC6A12 solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 816270 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5848 KTI12 KTI12 homolog, chromatin associated (S. cerevisiae) 467961 1 1 1 0 1 0 0 0 0 0 0.37 1.00 -5849 TIMM44 translocase of inner mitochondrial membrane 44 homolog (yeast) 605865 1 1 1 1 0 1 0 0 0 0 0.37 1.00 -5850 VANGL2 vang-like 2 (van gogh, Drosophila) 808158 1 1 1 1 0 0 1 0 0 0 0.37 1.00 -5851 ANGEL1 angel homolog 1 (Drosophila) 1006395 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5852 FBXO6 F-box protein 6 457314 1 1 1 1 0 0 1 0 0 0 0.37 1.00 -5853 BCLAF1 BCL2-associated transcription factor 1 1423149 1 1 1 0 0 0 0 0 1 0 0.37 1.00 -5854 TREML2 triggering receptor expressed on myeloid cells-like 2 477087 1 1 1 1 0 0 1 0 0 0 0.37 1.00 -5855 GUCY2F guanylate cyclase 2F, retinal 1723293 2 2 2 0 0 2 0 0 0 0 0.37 1.00 -5856 CD19 CD19 molecule 776724 1 1 1 0 0 1 0 0 0 0 0.37 1.00 -5857 ZNF320 zinc finger protein 320 781794 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5858 MAP1D 509028 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5859 AMACR alpha-methylacyl-CoA racemase 605865 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5860 ZNF480 zinc finger protein 480 823368 1 1 1 0 0 0 0 1 0 0 0.37 1.00 -5861 ARSK arylsulfatase family, member K 767091 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5862 PLBD2 590655 1 1 1 0 0 0 0 1 0 0 0.37 1.00 -5863 ARHGAP36 855816 1 1 1 2 0 1 0 0 0 0 0.37 1.00 -5864 NSUN7 NOL1/NOP2/Sun domain family, member 7 794976 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5865 PRSS8 protease, serine, 8 501930 1 1 1 0 0 0 1 0 0 0 0.37 1.00 -5866 AGL amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III) 2433600 3 3 3 0 0 1 1 0 1 0 0.38 1.00 -5867 C10orf88 chromosome 10 open reading frame 88 605358 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5868 NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 689013 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5869 DCAF11 860379 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5870 COL13A1 collagen, type XIII, alpha 1 943020 1 1 1 1 0 1 0 0 0 0 0.38 1.00 -5871 CASC4 cancer susceptibility candidate 4 684957 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5872 CD274 CD274 molecule 454779 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5873 EPB41L5 erythrocyte membrane protein band 4.1 like 5 1165086 2 2 2 0 0 1 1 0 0 0 0.38 1.00 -5874 EPOR erythropoietin receptor 586599 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5875 NDOR1 NADPH dependent diflavin oxidoreductase 1 644397 1 1 1 1 0 1 0 0 0 0 0.38 1.00 -5876 CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 1453569 2 2 2 0 0 1 0 1 0 0 0.38 1.00 -5877 CEP57 centrosomal protein 57kDa 759486 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5878 SILV silver homolog (mouse) 1029210 1 1 1 2 0 0 0 0 1 0 0.38 1.00 -5879 MSL3 806637 1 1 1 1 0 1 0 0 0 0 0.38 1.00 -5880 FCGRT Fc fragment of IgG, receptor, transporter, alpha 526266 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5881 ZNF311 zinc finger protein 311 1026675 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5882 ZNF234 zinc finger protein 234 1074333 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5883 PCDHGA11 protocadherin gamma subfamily A, 11 1418079 2 2 2 0 1 1 0 0 0 0 0.38 1.00 -5884 C6orf58 chromosome 6 open reading frame 58 515619 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5885 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 705237 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5886 SIPA1L1 signal-induced proliferation-associated 1 like 1 2787993 4 4 4 2 1 1 1 1 0 0 0.38 1.00 -5887 DLGAP3 discs, large (Drosophila) homolog-associated protein 3 787878 1 1 1 1 0 1 0 0 0 0 0.38 1.00 -5888 DSTYK 1304511 2 2 2 2 0 1 0 1 0 0 0.38 1.00 -5889 CCDC142 coiled-coil domain containing 142 1021098 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5890 KIAA1033 KIAA1033 1815567 2 2 2 0 0 0 1 0 1 0 0.38 1.00 -5891 IL6R interleukin 6 receptor 682422 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5892 PPP2R3A protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha 1845987 3 3 3 0 2 0 1 0 0 0 0.38 1.00 -5893 GLE1 GLE1 RNA export mediator homolog (yeast) 1103739 2 1 2 0 0 0 0 0 0 2 0.38 1.00 -5894 CWF19L2 CWF19-like 2, cell cycle control (S. pombe) 1095120 1 1 1 0 0 0 0 0 1 0 0.38 1.00 -5895 SPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1) 491283 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5896 KNG1 kininogen 1 953667 1 1 1 0 0 0 0 0 1 0 0.38 1.00 -5897 ZNF761 zinc finger protein 761 1142271 3 2 3 0 1 2 0 0 0 0 0.38 1.00 -5898 SMEK2 SMEK homolog 2, suppressor of mek1 (Dictyostelium) 1193478 2 2 2 0 1 0 0 0 1 0 0.38 1.00 -5899 ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 517647 1 1 1 0 0 0 0 0 1 0 0.38 1.00 -5900 TMEM66 transmembrane protein 66 475059 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5901 ELAC2 elaC homolog 2 (E. coli) 1064700 1 1 1 2 0 1 0 0 0 0 0.38 1.00 -5902 PSG4 pregnancy specific beta-1-glycoprotein 4 650988 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5903 OR4N2 olfactory receptor, family 4, subfamily N, member 2 470496 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5904 TRIM55 tripartite motif-containing 55 901953 1 1 1 0 0 0 0 0 1 0 0.38 1.00 -5905 PSMD3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 715377 1 1 1 2 1 0 0 0 0 0 0.38 1.00 -5906 NDRG2 NDRG family member 2 596232 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5907 DLC1 deleted in liver cancer 1 2360085 3 3 3 1 0 1 1 0 1 0 0.38 1.00 -5908 ZXDC ZXD family zinc finger C 817284 1 1 1 1 0 1 0 0 0 0 0.38 1.00 -5909 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 912093 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5910 LMAN1L lectin, mannose-binding, 1 like 672282 1 1 1 0 0 0 0 0 1 0 0.38 1.00 -5911 GPR6 G protein-coupled receptor 6 514605 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5912 IL1A interleukin 1, alpha 425880 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5913 FMO5 flavin containing monooxygenase 5 828438 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5914 GPRASP1 G protein-coupled receptor associated sorting protein 1 2125344 3 3 3 1 0 1 1 0 1 0 0.38 1.00 -5915 KIF1B kinesin family member 1B 3541902 5 5 4 1 2 2 0 1 0 0 0.38 1.00 -5916 RC3H1 ring finger and CCCH-type zinc finger domains 1 1763346 2 2 2 1 0 1 1 0 0 0 0.38 1.00 -5917 ASCC1 activating signal cointegrator 1 complex subunit 1 469989 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5918 EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1 928317 1 1 1 1 0 0 0 0 1 0 0.38 1.00 -5919 ACOT1 acyl-CoA thioesterase 1 414219 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5920 TMEM183B transmembrane protein 183B 532350 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5921 C11orf16 chromosome 11 open reading frame 16 678366 1 1 1 1 1 0 0 0 0 0 0.38 1.00 -5922 C1orf177 chromosome 1 open reading frame 177 578994 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5923 TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 989157 1 1 1 1 0 0 0 0 1 0 0.38 1.00 -5924 NPSR1 neuropeptide S receptor 1 641355 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5925 C21orf29 chromosome 21 open reading frame 29 541983 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5926 EXOC1 exocyst complex component 1 1397799 2 2 2 0 1 0 1 0 0 0 0.38 1.00 -5927 CIZ1 CDKN1A interacting zinc finger protein 1 1100697 1 1 1 0 0 0 0 0 1 0 0.38 1.00 -5928 CPXM2 carboxypeptidase X (M14 family), member 2 1023633 1 1 1 2 0 1 0 0 0 0 0.38 1.00 -5929 ENAH enabled homolog (Drosophila) 867984 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5930 TMEM169 transmembrane protein 169 457314 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5931 LASS4 LAG1 homolog, ceramide synthase 4 557193 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5932 C10orf26 chromosome 10 open reading frame 26 519675 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5933 NCSTN nicastrin 1110837 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5934 ZNF358 zinc finger protein 358 480636 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5935 LGR6 leucine-rich repeat-containing G protein-coupled receptor 6 1287780 2 2 2 0 0 2 0 0 0 0 0.38 1.00 -5936 SLAMF6 SLAM family member 6 522717 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5937 SI sucrase-isomaltase (alpha-glucosidase) 2875704 4 4 4 0 0 2 1 0 1 0 0.38 1.00 -5938 EPHA2 EPH receptor A2 1434810 2 2 2 1 1 1 0 0 0 0 0.38 1.00 -5939 UTP14C UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast) 1168635 2 2 2 0 1 0 1 0 0 0 0.38 1.00 -5940 MFI2 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 924768 1 1 1 3 0 1 0 0 0 0 0.38 1.00 -5941 OR7G3 olfactory receptor, family 7, subfamily G, member 3 478101 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5942 WWC1 WW and C2 domain containing 1 1634061 2 2 2 1 1 0 0 0 1 0 0.38 1.00 -5943 ECHDC1 enoyl Coenzyme A hydratase domain containing 1 470496 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5944 WDR82 WD repeat domain 82 448188 1 1 1 1 1 0 0 0 0 0 0.38 1.00 -5945 GLRA3 glycine receptor, alpha 3 727545 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5946 RIC3 resistance to inhibitors of cholinesterase 3 homolog (C. elegans) 545025 1 1 1 1 0 0 1 0 0 0 0.38 1.00 -5947 IPO8 importin 8 1603134 4 2 4 2 0 1 3 0 0 0 0.38 1.00 -5948 SLC25A20 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 422331 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5949 TRIM45 tripartite motif-containing 45 895869 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5950 C1orf26 chromosome 1 open reading frame 26 1406925 2 2 2 0 1 0 1 0 0 0 0.38 1.00 -5951 C15orf33 chromosome 15 open reading frame 33 804609 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5952 MTF2 metal response element binding transcription factor 2 933894 1 1 1 1 0 0 1 0 0 0 0.38 1.00 -5953 OR10A7 olfactory receptor, family 10, subfamily A, member 7 484185 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5954 PIK3C3 phosphoinositide-3-kinase, class 3 1401348 2 2 2 0 1 1 0 0 0 0 0.38 1.00 -5955 SLC10A1 solute carrier family 10 (sodium/bile acid cotransporter family), member 1 542490 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5956 COL6A3 collagen, type VI, alpha 3 4944264 5 5 5 2 0 1 2 0 2 0 0.38 1.00 -5957 EXOC2 exocyst complex component 2 1461681 2 2 2 0 0 1 1 0 0 0 0.38 1.00 -5958 APOBEC4 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) 561756 1 1 1 0 0 0 1 0 0 0 0.38 1.00 -5959 KIF2B kinesin family member 2B 1027182 1 1 1 0 0 0 0 1 0 0 0.38 1.00 -5960 TAB2 1067742 1 1 1 1 0 0 0 0 1 0 0.38 1.00 -5961 AQP4 aquaporin 4 502944 1 1 1 0 1 0 0 0 0 0 0.38 1.00 -5962 MAP3K9 mitogen-activated protein kinase kinase kinase 9 1497171 1 1 1 0 0 0 0 0 1 0 0.38 1.00 -5963 ANXA6 annexin A6 1058109 1 1 1 0 0 1 0 0 0 0 0.38 1.00 -5964 KIAA0922 KIAA0922 2292147 3 3 3 1 0 2 0 1 0 0 0.39 1.00 -5965 TWF2 twinfilin, actin-binding protein, homolog 2 (Drosophila) 509535 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -5966 FRMD5 FERM domain containing 5 843141 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -5967 TMPRSS13 transmembrane protease, serine 13 868491 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -5968 SYT11 synaptotagmin XI 665184 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -5969 TRIM68 tripartite motif-containing 68 751374 1 1 1 1 0 1 0 0 0 0 0.39 1.00 -5970 RTN2 reticulon 2 832494 1 1 1 1 0 0 0 1 0 0 0.39 1.00 -5971 MXRA5 matrix-remodelling associated 5 3965247 5 5 5 2 2 2 0 1 0 0 0.39 1.00 -5972 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) 692562 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -5973 ZNF502 zinc finger protein 502 833001 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -5974 KLK8 kallikrein-related peptidase 8 438048 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -5975 POU6F2 POU class 6 homeobox 2 1034280 1 1 1 2 0 1 0 0 0 0 0.39 1.00 -5976 CTSE cathepsin E 643890 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -5977 C9orf128 chromosome 9 open reading frame 128 438555 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -5978 PPP4R4 1363323 2 2 2 0 0 0 1 0 1 0 0.39 1.00 -5979 HK1 hexokinase 1 1489059 1 1 1 0 0 0 0 0 1 0 0.39 1.00 -5980 FBXO28 F-box protein 28 433992 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -5981 PLCZ1 phospholipase C, zeta 1 954681 1 1 1 1 0 0 1 0 0 0 0.39 1.00 -5982 UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 4338399 6 6 6 0 1 4 1 0 0 0 0.39 1.00 -5983 GPM6A glycoprotein M6A 438555 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -5984 TMTC1 transmembrane and tetratricopeptide repeat containing 1 1213251 2 2 2 0 0 2 0 0 0 0 0.39 1.00 -5985 DENND4C DENN/MADD domain containing 4C 2602938 3 3 3 0 1 0 1 0 1 0 0.39 1.00 -5986 TRPC4 transient receptor potential cation channel, subfamily C, member 4 1515423 2 2 2 1 0 2 0 0 0 0 0.39 1.00 -5987 VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) 1985919 3 3 3 0 1 0 1 1 0 0 0.39 1.00 -5988 C3orf63 chromosome 3 open reading frame 63 1961076 3 3 3 1 1 1 1 0 0 0 0.39 1.00 -5989 TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b 416247 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -5990 DRP2 dystrophin related protein 2 1429740 2 2 2 0 1 1 0 0 0 0 0.39 1.00 -5991 UNC5CL unc-5 homolog C (C. elegans)-like 740727 1 1 1 1 1 0 0 0 0 0 0.39 1.00 -5992 C12orf4 chromosome 12 open reading frame 4 867477 1 1 1 0 0 0 0 0 1 0 0.39 1.00 -5993 AMD1 adenosylmethionine decarboxylase 1 469989 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -5994 BTNL3 butyrophilin-like 3 726531 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -5995 IARS2 isoleucyl-tRNA synthetase 2, mitochondrial 1450020 2 2 2 0 1 1 0 0 0 0 0.39 1.00 -5996 AARS2 alanyl-tRNA synthetase 2, mitochondrial (putative) 1476384 2 2 2 0 0 1 1 0 0 0 0.39 1.00 -5997 NOX1 NADPH oxidase 1 885729 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -5998 BCL6 B-cell CLL/lymphoma 6 (zinc finger protein 51) 1087008 1 1 1 0 0 0 0 1 0 0 0.39 1.00 -5999 DNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4 520182 1 1 1 1 1 0 0 0 0 0 0.39 1.00 -6000 STK17A serine/threonine kinase 17a 538941 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6001 HOXA3 homeobox A3 589641 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6002 GTPBP1 GTP binding protein 1 929838 1 1 1 0 0 0 0 0 1 0 0.39 1.00 -6003 PSKH2 protein serine kinase H2 496353 1 1 1 1 1 0 0 0 0 0 0.39 1.00 -6004 TBL3 transducin (beta)-like 3 846690 1 1 1 1 0 0 1 0 0 0 0.39 1.00 -6005 PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 562263 1 1 1 1 0 0 0 1 0 0 0.39 1.00 -6006 HFE2 hemochromatosis type 2 (juvenile) 643890 1 1 1 1 0 0 1 0 0 0 0.39 1.00 -6007 C12orf11 chromosome 12 open reading frame 11 1107795 1 1 1 1 0 0 0 1 0 0 0.39 1.00 -6008 WT1 Wilms tumor 1 423852 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6009 FBXL18 F-box and leucine-rich repeat protein 18 467454 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6010 GPR31 G protein-coupled receptor 31 457314 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6011 TBCC tubulin folding cofactor C 462384 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6012 PPP1R13L protein phosphatase 1, regulatory (inhibitor) subunit 13 like 565305 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6013 RPL4 ribosomal protein L4 671268 1 1 1 1 0 0 0 1 0 0 0.39 1.00 -6014 ALDH1B1 aldehyde dehydrogenase 1 family, member B1 789906 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6015 PBX1 pre-B-cell leukemia homeobox 1 574938 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6016 CETP cholesteryl ester transfer protein, plasma 783822 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6017 ANKRD50 ankyrin repeat domain 50 2180100 3 3 3 0 0 0 2 1 0 0 0.39 1.00 -6018 ZC3H11A zinc finger CCCH-type containing 11A 1265979 2 2 2 0 2 0 0 0 0 0 0.39 1.00 -6019 TSEN2 tRNA splicing endonuclease 2 homolog (S. cerevisiae) 750867 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6020 FPR2 formyl peptide receptor 2 537420 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6021 PLAT plasminogen activator, tissue 867984 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6022 SOX2 SRY (sex determining region Y)-box 2 456300 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6023 CLPX ClpX caseinolytic peptidase X homolog (E. coli) 950625 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6024 PRG4 proteoglycan 4 1866774 2 2 2 2 0 0 1 0 1 0 0.39 1.00 -6025 PSMB8 proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) 503958 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6026 EMID1 EMI domain containing 1 429429 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6027 TRIM49 tripartite motif-containing 49 582036 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6028 MPRIP 957723 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6029 ITFG1 integrin alpha FG-GAP repeat containing 1 861393 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6030 FERMT2 fermitin family homolog 2 (Drosophila) 1070277 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6031 ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 2123316 3 3 3 0 1 0 2 0 0 0 0.39 1.00 -6032 OR3A1 olfactory receptor, family 3, subfamily A, member 1 482157 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6033 ZSCAN10 zinc finger and SCAN domain containing 10 424359 1 1 1 1 1 0 0 0 0 0 0.39 1.00 -6034 SCARF1 scavenger receptor class F, member 1 604344 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6035 ARID5A AT rich interactive domain 5A (MRF1-like) 733122 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6036 HELZ helicase with zinc finger 3016143 4 4 4 1 0 1 2 0 1 0 0.39 1.00 -6037 CCDC110 coiled-coil domain containing 110 1275612 2 2 2 0 1 1 0 0 0 0 0.39 1.00 -6038 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 840606 1 1 1 1 0 0 0 1 0 0 0.39 1.00 -6039 DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 1144806 2 2 2 1 0 1 1 0 0 0 0.39 1.00 -6040 IMPG2 interphotoreceptor matrix proteoglycan 2 1927614 3 3 3 1 1 1 0 0 1 0 0.39 1.00 -6041 INTS4 integrator complex subunit 4 1512888 1 1 1 1 0 0 0 0 1 0 0.39 1.00 -6042 LARP7 La ribonucleoprotein domain family, member 7 911079 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6043 KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 536406 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6044 SMC4 structural maintenance of chromosomes 4 1934712 3 3 3 1 1 0 1 1 0 0 0.39 1.00 -6045 EFHC1 EF-hand domain (C-terminal) containing 1 997269 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6046 CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant 940485 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6047 QTRT1 queuine tRNA-ribosyltransferase 1 (tRNA-guanine transglycosylase) 542490 1 1 1 1 1 0 0 0 0 0 0.39 1.00 -6048 DAPK2 death-associated protein kinase 2 584064 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6049 CCDC123 coiled-coil domain containing 123 1202097 2 2 2 0 1 1 0 0 0 0 0.39 1.00 -6050 C2orf86 1136187 1 1 1 0 0 0 0 0 1 0 0.39 1.00 -6051 TAAR6 trace amine associated receptor 6 528294 1 1 1 0 0 0 0 1 0 0 0.39 1.00 -6052 KIAA0913 KIAA0913 2480244 3 3 3 0 0 1 1 0 1 0 0.39 1.00 -6053 ZNF180 zinc finger protein 180 1064193 1 1 1 0 0 0 0 0 1 0 0.39 1.00 -6054 SPDYC speedy homolog C (Drosophila) 461370 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6055 CYFIP2 cytoplasmic FMR1 interacting protein 2 1809990 2 2 2 0 0 0 1 0 1 0 0.39 1.00 -6056 ZMYND8 zinc finger, MYND-type containing 8 1819116 2 2 2 0 1 0 1 0 0 0 0.39 1.00 -6057 TUBA3D tubulin, alpha 3d 696111 1 1 1 0 0 1 0 0 0 0 0.39 1.00 -6058 ZNF91 zinc finger protein 91 1819116 2 2 2 0 0 0 2 0 0 0 0.39 1.00 -6059 SPPL2A 787371 1 1 1 0 0 0 0 1 0 0 0.39 1.00 -6060 C9orf11 chromosome 9 open reading frame 11 464919 1 1 1 0 1 0 0 0 0 0 0.39 1.00 -6061 VCP valosin-containing protein 1251276 2 2 2 0 0 0 1 0 1 0 0.39 1.00 -6062 GPR137B G protein-coupled receptor 137B 572403 1 1 1 0 0 0 1 0 0 0 0.39 1.00 -6063 NBPF7 neuroblastoma breakpoint family, member 7 658086 1 1 1 1 0 0 1 0 0 0 0.39 1.00 -6064 OR10J3 olfactory receptor, family 10, subfamily J, member 3 503958 1 1 1 0 0 0 0 1 0 0 0.39 1.00 -6065 SERPINB12 serpin peptidase inhibitor, clade B (ovalbumin), member 12 631722 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6066 TMEM108 transmembrane protein 108 884208 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6067 EEF2 eukaryotic translation elongation factor 2 605865 1 1 1 1 1 0 0 0 0 0 0.40 1.00 -6068 ST5 suppression of tumorigenicity 5 1734954 2 2 2 1 1 1 0 0 0 0 0.40 1.00 -6069 SLC45A3 solute carrier family 45, member 3 850746 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6070 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 1025154 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6071 TRMT1 TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae) 920205 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6072 NLRP7 NLR family, pyrin domain containing 7 1598571 2 2 2 2 0 2 0 0 0 0 0.40 1.00 -6073 ZBTB46 zinc finger and BTB domain containing 46 490269 2 1 2 0 1 0 1 0 0 0 0.40 1.00 -6074 APLP2 amyloid beta (A4) precursor-like protein 2 1143285 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6075 EXO1 exonuclease 1 1314651 2 2 2 0 1 0 1 0 0 0 0.40 1.00 -6076 RBM4B RNA binding motif protein 4B 551616 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6077 ITSN1 intersectin 1 (SH3 domain protein) 2646033 3 3 3 0 0 3 0 0 0 0 0.40 1.00 -6078 FOXP1 forkhead box P1 1149369 1 1 1 1 0 0 0 0 1 0 0.40 1.00 -6079 CTTN cortactin 947583 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6080 OSBP2 oxysterol binding protein 2 733122 1 1 1 1 1 0 0 0 0 0 0.40 1.00 -6081 RALY RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) 454779 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6082 WAS Wiskott-Aldrich syndrome (eczema-thrombocytopenia) 696111 1 1 1 2 0 0 1 0 0 0 0.40 1.00 -6083 PEF1 penta-EF-hand domain containing 1 429429 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6084 TRA2B 457821 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6085 FAM160B2 504465 1 1 1 1 0 0 1 0 0 0 0.40 1.00 -6086 CD33 CD33 molecule 569361 1 1 1 1 0 0 1 0 0 0 0.40 1.00 -6087 TBX22 T-box 22 808665 1 1 1 0 0 0 0 1 0 0 0.40 1.00 -6088 WNK3 WNK lysine deficient protein kinase 3 2768727 4 4 4 0 1 2 1 0 0 0 0.40 1.00 -6089 MYH10 myosin, heavy chain 10, non-muscle 3022734 4 4 4 1 2 1 1 0 0 0 0.40 1.00 -6090 SLC26A4 solute carrier family 26, member 4 1143285 1 1 1 1 0 0 0 0 1 0 0.40 1.00 -6091 LPHN1 latrophilin 1 1888068 2 2 2 1 0 0 0 1 1 0 0.40 1.00 -6092 UGT2B4 UDP glucuronosyltransferase 2 family, polypeptide B4 816777 1 1 1 1 0 0 1 0 0 0 0.40 1.00 -6093 SLITRK1 SLIT and NTRK-like family, member 1 1058109 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6094 SYN3 synapsin III 863421 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6095 DMXL1 Dmx-like 1 4634487 7 6 7 1 1 0 3 2 1 0 0.40 1.00 -6096 C14orf115 chromosome 14 open reading frame 115 1071291 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6097 UGT8 UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) 834522 1 1 1 1 0 0 0 0 1 0 0.40 1.00 -6098 UST uronyl-2-sulfotransferase 508014 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6099 NOP2 1260909 2 2 2 0 0 0 1 1 0 0 0.40 1.00 -6100 GRAMD2 GRAM domain containing 2 541476 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6101 NEK11 NIMA (never in mitosis gene a)- related kinase 11 1024140 1 1 1 1 0 0 0 0 1 0 0.40 1.00 -6102 AKR1C1 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase) 466947 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6103 NCEH1 693069 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6104 DNTTIP1 deoxynucleotidyltransferase, terminal, interacting protein 1 455286 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6105 ERC1 ELKS/RAB6-interacting/CAST family member 1 1735461 2 2 2 0 1 1 0 0 0 0 0.40 1.00 -6106 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 824889 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6107 LINGO4 leucine rich repeat and Ig domain containing 4 893334 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6108 MUC7 mucin 7, secreted 578994 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6109 OR4D11 olfactory receptor, family 4, subfamily D, member 11 476580 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6110 FAM190B 1276119 2 2 2 0 1 1 0 0 0 0 0.40 1.00 -6111 SUSD2 sushi domain containing 2 666198 1 1 1 0 0 0 0 1 0 0 0.40 1.00 -6112 KRT83 keratin 83 769626 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6113 MDM2 Mdm2 p53 binding protein homolog (mouse) 770640 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6114 DCTN4 dynactin 4 (p62) 727545 1 1 1 1 0 0 1 0 0 0 0.40 1.00 -6115 NTAN1 N-terminal asparagine amidase 450216 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6116 RNF144B ring finger 144B 476580 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6117 LRRC19 leucine rich repeat containing 19 572403 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6118 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2161848 3 3 3 0 1 1 1 0 0 0 0.40 1.00 -6119 SHPRH SNF2 histone linker PHD RING helicase 2642484 3 3 3 0 0 0 2 1 0 0 0.40 1.00 -6120 OR5AS1 olfactory receptor, family 5, subfamily AS, member 1 496353 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6121 FBN1 fibrillin 1 4498611 6 6 6 5 3 3 0 0 0 0 0.40 1.00 -6122 GRN granulin 923754 1 1 1 1 1 0 0 0 0 0 0.40 1.00 -6123 GUCY2D guanylate cyclase 2D, membrane (retina-specific) 1118949 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6124 G6PD glucose-6-phosphate dehydrogenase 777231 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6125 USP43 ubiquitin specific peptidase 43 1088022 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6126 LRRC49 leucine rich repeat containing 49 1077375 1 1 1 1 0 0 0 0 1 0 0.40 1.00 -6127 PDS5B PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) 2271360 3 3 3 0 1 1 1 0 0 0 0.40 1.00 -6128 UFD1L ubiquitin fusion degradation 1 like (yeast) 478608 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6129 ZIC1 Zic family member 1 (odd-paired homolog, Drosophila) 518661 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6130 ACP5 acid phosphatase 5, tartrate resistant 500409 1 1 1 1 0 1 0 0 0 0 0.40 1.00 -6131 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 743262 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6132 CCDC82 coiled-coil domain containing 82 843141 1 1 1 1 0 1 0 0 0 0 0.40 1.00 -6133 CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 730587 1 1 1 1 0 1 0 0 0 0 0.40 1.00 -6134 DYRK2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 817284 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6135 KIAA1370 KIAA1370 1598064 2 2 2 0 0 0 2 0 0 0 0.40 1.00 -6136 CLEC4M C-type lectin domain family 4, member M 633243 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6137 ISPD 572910 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6138 ZNRF3 zinc and ring finger 3 972426 1 1 1 1 1 0 0 0 0 0 0.40 1.00 -6139 OMA1 OMA1 homolog, zinc metallopeptidase (S. cerevisiae) 814749 1 1 1 0 0 0 0 1 0 0 0.40 1.00 -6140 LAMA3 laminin, alpha 3 4742478 6 6 6 0 0 4 0 0 2 0 0.40 1.00 -6141 PCOLCE2 procollagen C-endopeptidase enhancer 2 606879 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6142 NSFL1C NSFL1 (p97) cofactor (p47) 527280 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6143 ALG9 asparagine-linked glycosylation 9 homolog (S. cerevisiae, alpha- 1,2-mannosyltransferase) 903474 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6144 LMX1A LIM homeobox transcription factor 1, alpha 569868 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6145 TBX6 T-box 6 586092 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6146 EFCAB4B EF-hand calcium binding domain 4B 618540 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6147 DTWD1 DTW domain containing 1 472017 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6148 DTNB dystrobrevin, beta 976989 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6149 WSB1 WD repeat and SOCS box-containing 1 660114 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6150 ANKRD40 ankyrin repeat domain 40 571389 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6151 SNX29 sorting nexin 29 649467 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6152 C18orf25 chromosome 18 open reading frame 25 622596 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6153 C17orf46 chromosome 17 open reading frame 46 585078 1 1 1 0 0 0 1 0 0 0 0.40 1.00 -6154 GLUD2 glutamate dehydrogenase 2 771654 1 1 1 1 0 0 1 0 0 0 0.40 1.00 -6155 SLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4 760500 1 1 1 1 0 0 1 0 0 0 0.40 1.00 -6156 MAPK10 mitogen-activated protein kinase 10 734136 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6157 MSN moesin 905502 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6158 PDE4B phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) 1334931 2 2 2 0 1 0 1 0 0 0 0.40 1.00 -6159 FAM155B family with sequence similarity 155, member B 543504 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6160 SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) 1055574 1 1 1 2 0 0 1 0 0 0 0.40 1.00 -6161 TMEM74 transmembrane protein 74 467454 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6162 ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa 479115 1 1 1 2 0 0 1 0 0 0 0.40 1.00 -6163 MYO1D myosin ID 1438866 2 2 2 0 1 1 0 0 0 0 0.40 1.00 -6164 ZNF510 zinc finger protein 510 1049997 1 1 1 1 0 0 0 0 1 0 0.40 1.00 -6165 PET112L PET112-like (yeast) 836550 1 1 1 0 1 0 0 0 0 0 0.40 1.00 -6166 CTAGE1 cutaneous T-cell lymphoma-associated antigen 1 1136694 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6167 MYBL2 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 1045941 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6168 PION 1305525 2 2 2 1 0 0 1 0 1 0 0.40 1.00 -6169 TFEC transcription factor EC 543504 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6170 SEMA4A sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 1173705 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6171 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 1149369 1 1 1 0 0 0 0 0 1 0 0.40 1.00 -6172 DNAH2 dynein, axonemal, heavy chain 2 6860724 10 9 10 2 1 3 3 2 1 0 0.40 1.00 -6173 TUBB tubulin, beta 684957 1 1 1 0 0 1 0 0 0 0 0.40 1.00 -6174 ACSL5 acyl-CoA synthetase long-chain family member 5 1168128 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6175 LPCAT1 lysophosphatidylcholine acyltransferase 1 688506 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6176 MASP2 mannan-binding lectin serine peptidase 2 720447 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6177 MKS1 Meckel syndrome, type 1 843648 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6178 PVRL3 poliovirus receptor-related 3 765570 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6179 BTBD3 BTB (POZ) domain containing 3 803595 1 1 1 1 1 0 0 0 0 0 0.41 1.00 -6180 CAMTA1 calmodulin binding transcription activator 1 2526888 3 3 3 2 1 0 0 2 0 0 0.41 1.00 -6181 FBXO7 F-box protein 7 749853 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6182 SLC35F3 solute carrier family 35, member F3 713349 1 1 1 2 0 1 0 0 0 0 0.41 1.00 -6183 KIAA0494 KIAA0494 776724 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6184 XIRP2 xin actin-binding repeat containing 2 6203652 9 8 9 4 2 5 2 0 0 0 0.41 1.00 -6185 KIAA0247 KIAA0247 472524 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6186 PUM2 pumilio homolog 2 (Drosophila) 1660425 2 2 2 1 0 1 0 1 0 0 0.41 1.00 -6187 AS3MT arsenic (+3 oxidation state) methyltransferase 591669 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6188 SCN4A sodium channel, voltage-gated, type IV, alpha subunit 2591277 3 3 3 2 1 0 0 2 0 0 0.41 1.00 -6189 GJA9 gap junction protein, alpha 9, 59kDa 786864 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6190 KLHL18 kelch-like 18 (Drosophila) 827424 1 1 1 1 0 1 0 0 0 0 0.41 1.00 -6191 DOK4 docking protein 4 479115 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6192 SSX2IP synovial sarcoma, X breakpoint 2 interacting protein 961779 1 1 1 2 0 1 0 0 0 0 0.41 1.00 -6193 TESK2 testis-specific kinase 2 890292 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6194 DNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 3 555672 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6195 ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 3535311 5 5 5 0 2 2 1 0 0 0 0.41 1.00 -6196 CHRM3 cholinergic receptor, muscarinic 3 888771 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6197 KLF3 Kruppel-like factor 3 (basic) 536406 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6198 SLFN11 schlafen family member 11 1304004 2 2 2 0 1 0 0 1 0 0 0.41 1.00 -6199 ZNF385B zinc finger protein 385B 684450 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6200 GHSR growth hormone secretagogue receptor 507507 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6201 PUS10 pseudouridylate synthase 10 840606 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6202 HSF2 heat shock transcription factor 2 828945 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6203 CSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C) 705237 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6204 STX3 syntaxin 3 444132 1 1 1 1 1 0 0 0 0 0 0.41 1.00 -6205 EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 1575249 1 1 1 1 0 0 0 0 1 0 0.41 1.00 -6206 SLC9A10 solute carrier family 9, member 10 1848522 2 2 2 0 0 0 2 0 0 0 0.41 1.00 -6207 RIPK3 receptor-interacting serine-threonine kinase 3 809679 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6208 KCNA6 potassium voltage-gated channel, shaker-related subfamily, member 6 807651 1 1 1 1 0 1 0 0 0 0 0.41 1.00 -6209 TCEA3 transcription elongation factor A (SII), 3 470496 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6210 CASQ2 calsequestrin 2 (cardiac muscle) 630708 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6211 ARAF v-raf murine sarcoma 3611 viral oncogene homolog 807651 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6212 LPXN leupaxin 606879 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6213 ABHD12 abhydrolase domain containing 12 537927 1 1 1 0 0 0 0 1 0 0 0.41 1.00 -6214 PLCD1 phospholipase C, delta 1 1154946 1 1 1 1 0 0 0 0 1 0 0.41 1.00 -6215 FOXR2 forkhead box R2 476580 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6216 JPH1 junctophilin 1 778245 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6217 FBLN2 fibulin 2 1076868 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6218 NOM1 nucleolar protein with MIF4G domain 1 1084980 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6219 DPYSL2 dihydropyrimidinase-like 2 899925 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6220 PHLDB1 pleckstrin homology-like domain, family B, member 1 2112162 3 3 3 2 3 0 0 0 0 0 0.41 1.00 -6221 RGAG4 retrotransposon gag domain containing 4 855816 1 1 1 0 0 0 0 1 0 0 0.41 1.00 -6222 LUZP4 leucine zipper protein 4 485706 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6223 OR5AN1 olfactory receptor, family 5, subfamily AN, member 1 476580 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6224 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 714870 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6225 SLC25A44 solute carrier family 25, member 44 485199 1 1 1 1 0 1 0 0 0 0 0.41 1.00 -6226 NEK2 NIMA (never in mitosis gene a)-related kinase 2 694590 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6227 HPS6 Hermansky-Pudlak syndrome 6 924768 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6228 SLC30A1 solute carrier family 30 (zinc transporter), member 1 512070 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6229 FMO1 flavin containing monooxygenase 1 826917 1 1 1 1 1 0 0 0 0 0 0.41 1.00 -6230 MTDH metadherin 715884 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6231 DGKE diacylglycerol kinase, epsilon 64kDa 886236 1 1 1 1 0 0 0 0 1 0 0.41 1.00 -6232 GDF3 growth differentiation factor 3 559221 1 1 1 1 0 1 0 0 0 0 0.41 1.00 -6233 CHMP7 CHMP family, member 7 531336 1 1 1 0 0 0 0 1 0 0 0.41 1.00 -6234 CCDC109A coiled-coil domain containing 109A 473538 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6235 ZNF645 zinc finger protein 645 649974 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6236 KANK4 KN motif and ankyrin repeat domains 4 1533168 2 2 2 1 1 0 0 1 0 0 0.41 1.00 -6237 CNGA2 cyclic nucleotide gated channel alpha 2 999297 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6238 CPEB3 cytoplasmic polyadenylation element binding protein 3 574431 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6239 LEKR1 leucine, glutamate and lysine rich 1 605358 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6240 ELL3 elongation factor RNA polymerase II-like 3 538941 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6241 FETUB fetuin B 596739 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6242 RTKN rhotekin 862407 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6243 ZBTB41 zinc finger and BTB domain containing 41 1404390 2 2 2 1 0 0 1 1 0 0 0.41 1.00 -6244 ABCA9 ATP-binding cassette, sub-family A (ABC1), member 9 2548689 3 3 3 2 1 0 2 0 0 0 0.41 1.00 -6245 MFF 539955 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6246 PAK7 p21(CDKN1A)-activated kinase 7 1111344 1 1 1 1 0 0 0 1 0 0 0.41 1.00 -6247 CWH43 1073319 1 1 1 0 0 0 0 1 0 0 0.41 1.00 -6248 LMBRD1 LMBR1 domain containing 1 818298 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6249 MAGEB3 melanoma antigen family B, 3 529815 1 1 1 1 1 0 0 0 0 0 0.41 1.00 -6250 SOAT1 sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 868491 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6251 KCNJ4 potassium inwardly-rectifying channel, subfamily J, member 4 606372 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6252 USP51 ubiquitin specific peptidase 51 979017 1 1 1 1 0 0 0 1 0 0 0.41 1.00 -6253 AKR1C4 aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4) 511056 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6254 ABCD2 ATP-binding cassette, sub-family D (ALD), member 2 1147341 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6255 ZNF8 zinc finger protein 8 848718 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6256 N4BP2L2 NEDD4 binding protein 2-like 2 1841931 2 2 2 0 0 2 0 0 0 0 0.41 1.00 -6257 DCAF12L2 628680 1 1 1 1 0 0 1 0 0 0 0.41 1.00 -6258 CAMSAP1L1 calmodulin regulated spectrin-associated protein 1-like 1 2284035 3 3 3 0 0 1 1 1 0 0 0.41 1.00 -6259 BRF2 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like 611949 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6260 OR6K6 olfactory receptor, family 6, subfamily K, member 6 525252 1 1 1 0 0 1 0 0 0 0 0.41 1.00 -6261 HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 2225730 3 3 3 0 1 1 1 0 0 0 0.41 1.00 -6262 OTUD7A OTU domain containing 7A 574431 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6263 TBX18 T-box 18 790413 1 1 1 1 1 0 0 0 0 0 0.41 1.00 -6264 PCDHA4 protocadherin alpha 4 1454583 2 2 2 2 0 1 1 0 0 0 0.41 1.00 -6265 LHX8 LIM homeobox 8 451737 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6266 GIPR gastric inhibitory polypeptide receptor 568854 1 1 1 1 0 0 1 0 0 0 0.41 1.00 -6267 NSUN2 NOL1/NOP2/Sun domain family, member 2 1155960 1 1 1 0 0 0 0 0 1 0 0.41 1.00 -6268 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 525252 1 1 1 0 1 0 0 0 0 0 0.41 1.00 -6269 CWF19L1 CWF19-like 1, cell cycle control (S. pombe) 848211 1 1 1 0 0 0 1 0 0 0 0.41 1.00 -6270 ZNF498 zinc finger protein 498 838578 2 1 2 0 0 0 0 1 1 0 0.41 1.00 -6271 NMD3 NMD3 homolog (S. cerevisiae) 797004 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6272 TLR8 toll-like receptor 8 1588938 2 2 2 0 0 1 0 0 1 0 0.42 1.00 -6273 SH3PXD2A SH3 and PX domains 2A 1647243 1 1 1 0 0 0 0 0 1 0 0.42 1.00 -6274 MAP2K5 mitogen-activated protein kinase kinase 5 672282 1 1 1 0 0 0 0 0 1 0 0.42 1.00 -6275 NPY2R neuropeptide Y receptor Y2 583050 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6276 SFRP4 secreted frizzled-related protein 4 537420 1 1 1 0 0 0 0 1 0 0 0.42 1.00 -6277 PPAP2A phosphatidic acid phosphatase type 2A 494832 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6278 CORO2B coronin, actin binding protein, 2B 673803 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6279 TREH trehalase (brush-border membrane glycoprotein) 637806 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6280 ESRRG estrogen-related receptor gamma 712335 1 1 1 1 1 0 0 0 0 0 0.42 1.00 -6281 BAIAP2L1 BAI1-associated protein 2-like 1 763542 1 1 1 2 0 1 0 0 0 0 0.42 1.00 -6282 OSBPL7 oxysterol binding protein-like 7 1003353 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6283 CCDC101 coiled-coil domain containing 101 462384 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6284 PDK2 pyruvate dehydrogenase kinase, isozyme 2 564798 1 1 1 1 1 0 0 0 0 0 0.42 1.00 -6285 VRK2 vaccinia related kinase 2 798525 1 1 1 0 0 0 0 1 0 0 0.42 1.00 -6286 ST14 suppression of tumorigenicity 14 (colon carcinoma) 1039350 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6287 RARS2 arginyl-tRNA synthetase 2, mitochondrial 921219 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6288 KPRP keratinocyte proline-rich protein 884208 1 1 1 1 0 1 0 0 0 0 0.42 1.00 -6289 WDR20 WD repeat domain 20 911079 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6290 DCAF12L1 599781 1 1 1 3 0 1 0 0 0 0 0.42 1.00 -6291 FLRT1 fibronectin leucine rich transmembrane protein 1 1014000 1 1 1 2 0 1 0 0 0 0 0.42 1.00 -6292 ASB15 ankyrin repeat and SOCS box-containing 15 914121 1 1 1 1 1 0 0 0 0 0 0.42 1.00 -6293 DENND3 DENN/MADD domain containing 3 1739010 2 2 2 1 0 1 0 1 0 0 0.42 1.00 -6294 OR10AG1 olfactory receptor, family 10, subfamily AG, member 1 461370 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6295 C16orf58 chromosome 16 open reading frame 58 471510 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6296 VPRBP Vpr (HIV-1) binding protein 2257671 3 3 3 0 1 0 0 0 2 0 0.42 1.00 -6297 LPIN3 lipin 3 1334424 2 2 2 1 1 1 0 0 0 0 0.42 1.00 -6298 RXFP4 relaxin/insulin-like family peptide receptor 4 564798 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6299 TRDMT1 tRNA aspartic acid methyltransferase 1 553137 1 1 1 0 0 0 0 1 0 0 0.42 1.00 -6300 FBXO40 F-box protein 40 1085994 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6301 PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime 1351155 2 2 2 0 2 0 0 0 0 0 0.42 1.00 -6302 ACVR1 activin A receptor, type I 793962 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6303 MGRN1 mahogunin, ring finger 1 617019 1 1 1 0 0 0 0 1 0 0 0.42 1.00 -6304 BDNF brain-derived neurotrophic factor 523731 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6305 ADORA3 adenosine A3 receptor 907530 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6306 SLC7A7 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 797004 1 1 1 1 0 0 1 0 0 0 0.42 1.00 -6307 PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1 596739 1 1 1 1 0 1 0 0 0 0 0.42 1.00 -6308 BICD1 bicaudal D homolog 1 (Drosophila) 1403376 2 2 2 0 0 1 1 0 0 0 0.42 1.00 -6309 TKTL2 transketolase-like 2 835029 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6310 TLR2 toll-like receptor 2 1196013 1 1 1 1 0 0 0 0 1 0 0.42 1.00 -6311 PLEKHG3 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 1359774 2 2 2 0 1 0 1 0 0 0 0.42 1.00 -6312 FCRL2 Fc receptor-like 2 798525 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6313 FAM83A family with sequence similarity 83, member A 486213 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6314 PHF2 PHD finger protein 2 852267 1 1 1 1 0 0 0 0 1 0 0.42 1.00 -6315 CATSPER3 cation channel, sperm associated 3 587613 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6316 GPC3 glypican 3 809172 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6317 EPHA6 EPH receptor A6 1583868 2 2 2 0 1 0 1 0 0 0 0.42 1.00 -6318 MGA MAX gene associated 4602039 5 5 5 2 1 1 1 1 1 0 0.42 1.00 -6319 ANKRD13C ankyrin repeat domain 13C 850746 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6320 INTS7 integrator complex subunit 7 1505283 2 2 2 0 1 0 0 1 0 0 0.42 1.00 -6321 PIPOX pipecolic acid oxidase 610935 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6322 MMP11 matrix metallopeptidase 11 (stromelysin 3) 558207 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6323 ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 2040168 3 3 3 0 3 0 0 0 0 0 0.42 1.00 -6324 FAM83C family with sequence similarity 83, member C 1003860 1 1 1 1 0 1 0 0 0 0 0.42 1.00 -6325 MAN1B1 mannosidase, alpha, class 1B, member 1 873054 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6326 RBM25 RNA binding motif protein 25 1320228 2 2 2 1 1 0 1 0 0 0 0.42 1.00 -6327 TAS1R2 taste receptor, type 1, member 2 1186887 1 1 1 2 0 0 1 0 0 0 0.42 1.00 -6328 CHERP calcium homeostasis endoplasmic reticulum protein 888264 2 1 2 1 0 0 0 1 1 0 0.42 1.00 -6329 C10orf68 chromosome 10 open reading frame 68 997269 1 1 1 0 0 0 0 0 1 0 0.42 1.00 -6330 MMP8 matrix metallopeptidase 8 (neutrophil collagenase) 732108 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6331 ZNF710 zinc finger protein 710 876096 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6332 CSRP2BP CSRP2 binding protein 1211223 2 1 2 0 0 0 0 0 0 2 0.42 1.00 -6333 OR4C13 olfactory receptor, family 4, subfamily C, member 13 473538 1 1 1 1 1 0 0 0 0 0 0.42 1.00 -6334 PTPRS protein tyrosine phosphatase, receptor type, S 1596543 2 2 2 0 0 1 1 0 0 0 0.42 1.00 -6335 TPP1 tripeptidyl peptidase I 884208 1 1 1 0 0 0 0 0 1 0 0.42 1.00 -6336 SPAST spastin 800553 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6337 SLC6A5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 1007409 1 1 1 1 0 0 1 0 0 0 0.42 1.00 -6338 ACOX3 acyl-Coenzyme A oxidase 3, pristanoyl 931359 1 1 1 0 0 0 0 1 0 0 0.42 1.00 -6339 PLXNA2 plexin A2 2942628 4 4 4 1 2 0 1 1 0 0 0.42 1.00 -6340 EXPH5 exophilin 5 3038958 4 4 4 1 0 3 0 1 0 0 0.42 1.00 -6341 AKR1B15 466947 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6342 ZNF662 zinc finger protein 662 704730 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6343 OR5W2 olfactory receptor, family 5, subfamily W, member 2 475059 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6344 C6orf165 chromosome 6 open reading frame 165 971919 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6345 KIAA1009 KIAA1009 2088333 3 3 3 1 1 2 0 0 0 0 0.42 1.00 -6346 CXorf59 chromosome X open reading frame 59 785343 1 1 1 0 0 0 1 0 0 0 0.42 1.00 -6347 UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 2174016 3 3 3 0 1 1 1 0 0 0 0.42 1.00 -6348 PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform 738192 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6349 ITGAX integrin, alpha X (complement component 3 receptor 4 subunit) 1672086 2 2 2 3 1 1 0 0 0 0 0.42 1.00 -6350 SLC39A9 solute carrier family 39 (zinc transporter), member 9 482664 1 1 1 0 1 0 0 0 0 0 0.42 1.00 -6351 TAPBPL TAP binding protein-like 719433 1 1 1 0 0 1 0 0 0 0 0.42 1.00 -6352 PLEKHM1 pleckstrin homology domain containing, family M (with RUN domain) member 1 1422135 2 2 2 1 1 0 0 1 0 0 0.42 1.00 -6353 CDC123 cell division cycle 123 homolog (S. cerevisiae) 538941 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6354 TUBA1B tubulin, alpha 1b 692055 1 1 1 0 0 0 0 1 0 0 0.43 1.00 -6355 PMPCA peptidase (mitochondrial processing) alpha 736164 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -6356 ZNF79 zinc finger protein 79 769119 1 1 1 0 0 0 0 1 0 0 0.43 1.00 -6357 PBK PDZ binding kinase 505479 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6358 SYT16 synaptotagmin XVI 994734 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6359 FBXW8 F-box and WD repeat domain containing 8 770133 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6360 IFI44L interferon-induced protein 44-like 696618 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6361 SFRS15 splicing factor, arginine/serine-rich 15 1745601 2 2 2 1 0 0 0 1 1 0 0.43 1.00 -6362 PPOX protoporphyrinogen oxidase 751374 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6363 SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) 1371942 2 2 2 0 1 1 0 0 0 0 0.43 1.00 -6364 AZIN1 antizyme inhibitor 1 703209 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6365 POLR3B polymerase (RNA) III (DNA directed) polypeptide B 1743066 2 2 2 0 0 2 0 0 0 0 0.43 1.00 -6366 ZC3HC1 zinc finger, C3HC-type containing 1 785343 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -6367 C9orf117 chromosome 9 open reading frame 117 645411 1 1 1 0 0 0 0 1 0 0 0.43 1.00 -6368 EXD2 770133 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -6369 GABRG3 gamma-aminobutyric acid (GABA) A receptor, gamma 3 701688 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6370 AADACL2 arylacetamide deacetylase-like 2 621582 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -6371 RNF113B ring finger protein 113B 482664 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6372 ZC3H7B zinc finger CCCH-type containing 7B 1352169 2 2 2 2 1 0 0 1 0 0 0.43 1.00 -6373 HP1BP3 heterochromatin protein 1, binding protein 3 866970 1 1 1 1 1 0 0 0 0 0 0.43 1.00 -6374 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 834522 1 1 1 0 0 0 0 1 0 0 0.43 1.00 -6375 B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 1380054 2 2 2 0 0 2 0 0 0 0 0.43 1.00 -6376 MSH2 mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) 1345578 2 2 2 0 1 0 0 1 0 0 0.43 1.00 -6377 HEMGN hemogen 745797 1 1 1 0 0 0 0 1 0 0 0.43 1.00 -6378 DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 511563 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6379 ABCG5 ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1) 855816 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -6380 SHC1 SHC (Src homology 2 domain containing) transforming protein 1 914121 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6381 USP33 ubiquitin specific peptidase 33 1465737 2 2 2 0 0 1 1 0 0 0 0.43 1.00 -6382 MICAL3 microtubule associated monoxygenase, calponin and LIM domain containing 3 1800357 2 2 2 0 0 2 0 0 0 0 0.43 1.00 -6383 PHF20L1 PHD finger protein 20-like 1 1637610 2 2 2 0 0 0 0 1 1 0 0.43 1.00 -6384 GLT8D2 glycosyltransferase 8 domain containing 2 550602 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6385 IMPDH2 IMP (inosine monophosphate) dehydrogenase 2 759993 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -6386 STRAP serine/threonine kinase receptor associated protein 495339 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6387 ZNF250 zinc finger protein 250 842127 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6388 SETD2 SET domain containing 2 3260010 4 4 4 0 0 0 2 0 2 0 0.43 1.00 -6389 CREB3L3 cAMP responsive element binding protein 3-like 3 676338 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6390 SSRP1 structure specific recognition protein 1 1112358 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -6391 CC2D1A coiled-coil and C2 domain containing 1A 1346592 2 2 2 0 0 1 0 1 0 0 0.43 1.00 -6392 NLRC4 NLR family, CARD domain containing 4 1575249 2 2 2 1 1 1 0 0 0 0 0.43 1.00 -6393 PCM1 pericentriolar material 1 2695719 3 3 3 0 0 0 1 1 1 0 0.43 1.00 -6394 FSCN3 fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) 719940 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -6395 DOK6 docking protein 6 485706 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6396 ICK intestinal cell (MAK-like) kinase 989157 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6397 C6orf89 chromosome 6 open reading frame 89 553137 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6398 TUBGCP2 tubulin, gamma complex associated protein 2 991692 1 1 1 1 0 0 0 1 0 0 0.43 1.00 -6399 HPSE2 heparanase 2 863421 1 1 1 2 0 1 0 0 0 0 0.43 1.00 -6400 TMEM48 transmembrane protein 48 1032252 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6401 MMP13 matrix metallopeptidase 13 (collagenase 3) 738192 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -6402 PTCD3 Pentatricopeptide repeat domain 3 1088529 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6403 LRRC23 leucine rich repeat containing 23 629187 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6404 PRKAR2A protein kinase, cAMP-dependent, regulatory, type II, alpha 503451 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6405 ZNF184 zinc finger protein 184 1153932 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6406 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 940992 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -6407 RBM17 RNA binding motif protein 17 633750 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6408 PYROXD1 pyridine nucleotide-disulphide oxidoreductase domain 1 741741 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6409 CLASP2 cytoplasmic linker associated protein 2 2257671 3 3 3 1 1 1 1 0 0 0 0.43 1.00 -6410 ARHGAP17 Rho GTPase activating protein 17 1328847 2 2 2 1 2 0 0 0 0 0 0.43 1.00 -6411 EIF2C4 eukaryotic translation initiation factor 2C, 4 1335945 2 2 2 0 0 1 1 0 0 0 0.43 1.00 -6412 CS citrate synthase 709293 1 1 1 0 0 0 0 1 0 0 0.43 1.00 -6413 PIGB phosphatidylinositol glycan anchor biosynthesis, class B 720447 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6414 RLBP1 retinaldehyde binding protein 1 489255 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6415 FAS Fas (TNF receptor superfamily, member 6) 529308 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6416 RMND5B required for meiotic nuclear division 5 homolog B (S. cerevisiae) 615498 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6417 MMRN2 multimerin 2 1116414 1 1 1 1 0 0 0 0 1 0 0.43 1.00 -6418 SLC16A12 solute carrier family 16, member 12 (monocarboxylic acid transporter 12) 798525 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -6419 HAPLN3 hyaluronan and proteoglycan link protein 3 496860 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6420 KLRAQ1 1182831 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -6421 ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 553137 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6422 SPTLC1 serine palmitoyltransferase, long chain base subunit 1 754416 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -6423 FGL2 fibrinogen-like 2 673296 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6424 LILRA4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4 767598 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -6425 PLCB2 phospholipase C, beta 2 1645215 2 2 2 0 1 1 0 0 0 0 0.43 1.00 -6426 SLC24A4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 924768 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6427 SLTM SAFB-like, transcription modulator 1532661 2 2 2 1 1 0 0 0 1 0 0.43 1.00 -6428 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 2474667 3 3 3 0 0 3 0 0 0 0 0.43 1.00 -6429 CDKL3 cyclin-dependent kinase-like 3 709293 1 1 1 0 1 0 0 0 0 0 0.43 1.00 -6430 LPAR1 lysophosphatidic acid receptor 1 561249 1 1 1 1 0 1 0 0 0 0 0.43 1.00 -6431 TRAP1 TNF receptor-associated protein 1 662142 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6432 STAT1 signal transducer and activator of transcription 1, 91kDa 1190943 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -6433 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 811707 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6434 SMC1B structural maintenance of chromosomes 1B 1829256 2 2 2 1 0 0 1 0 1 0 0.43 1.00 -6435 ARAP3 2337270 3 3 3 0 1 1 0 1 0 0 0.43 1.00 -6436 GNPAT glyceronephosphate O-acyltransferase 1068249 1 1 1 1 0 0 1 0 0 0 0.43 1.00 -6437 AASDH aminoadipate-semialdehyde dehydrogenase 1699971 1 1 1 0 0 0 0 0 1 0 0.43 1.00 -6438 TPCN2 two pore segment channel 2 1043406 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6439 LHX2 LIM homeobox 2 520182 1 1 1 0 0 0 1 0 0 0 0.43 1.00 -6440 GAB1 GRB2-associated binding protein 1 1086501 1 1 1 0 0 1 0 0 0 0 0.43 1.00 -6441 LCP2 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) 767598 1 1 1 1 1 0 0 0 0 0 0.44 1.00 -6442 PNMA5 paraneoplastic antigen like 5 684957 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6443 KLHDC10 607893 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6444 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 2938065 4 4 4 0 1 2 1 0 0 0 0.44 1.00 -6445 MAP2K1 mitogen-activated protein kinase kinase 1 578994 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6446 STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 851253 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -6447 ITPRIP 835536 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6448 STAMBP STAM binding protein 664677 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6449 USP54 ubiquitin specific peptidase 54 2506101 3 3 3 2 0 1 1 1 0 0 0.44 1.00 -6450 FSIP1 fibrous sheath interacting protein 1 907530 1 1 1 0 0 0 0 1 0 0 0.44 1.00 -6451 STIM1 stromal interaction molecule 1 964821 1 1 1 1 0 0 1 0 0 0 0.44 1.00 -6452 CCDC50 coiled-coil domain containing 50 732108 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6453 USP20 ubiquitin specific peptidase 20 1144299 1 1 1 2 0 0 0 0 1 0 0.44 1.00 -6454 HNRNPH2 686478 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6455 EMR1 egf-like module containing, mucin-like, hormone receptor-like 1 1386645 2 2 2 1 0 2 0 0 0 0 0.44 1.00 -6456 ZFP64 zinc finger protein 64 homolog (mouse) 1627977 2 2 2 1 1 0 1 0 0 0 0.44 1.00 -6457 ADD3 adducin 3 (gamma) 1103739 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6458 TGFB3 transforming growth factor, beta 3 642369 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6459 GPR132 G protein-coupled receptor 132 583050 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6460 COL15A1 collagen, type XV, alpha 1 2197845 3 3 3 0 1 1 0 1 0 0 0.44 1.00 -6461 AGPAT6 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) 662142 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6462 WASF3 WAS protein family, member 3 780780 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6463 TRIP13 thyroid hormone receptor interactor 13 638313 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6464 RSAD1 radical S-adenosyl methionine domain containing 1 621075 1 1 1 1 1 0 0 0 0 0 0.44 1.00 -6465 PPP2R2D protein phosphatase 2, regulatory subunit B, delta isoform 655044 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6466 ZNF479 zinc finger protein 479 806637 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6467 PACS1 phosphofurin acidic cluster sorting protein 1 1327326 2 2 2 0 1 1 0 0 0 0 0.44 1.00 -6468 ADD2 adducin 2 (beta) 1213251 1 1 1 2 0 0 1 0 0 0 0.44 1.00 -6469 TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 939471 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6470 PLEKHM3 pleckstrin homology domain containing, family M, member 3 1173198 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -6471 USP37 ubiquitin specific peptidase 37 1537224 2 2 2 0 0 0 2 0 0 0 0.44 1.00 -6472 SLC4A1AP solute carrier family 4 (anion exchanger), member 1, adaptor protein 1240629 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -6473 TTC16 tetratricopeptide repeat domain 16 662649 1 1 1 1 0 0 1 0 0 0 0.44 1.00 -6474 GPR75 G protein-coupled receptor 75 824889 1 1 1 0 0 0 0 1 0 0 0.44 1.00 -6475 SPON1 spondin 1, extracellular matrix protein 952653 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6476 GPC2 glypican 2 650481 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6477 ACSM2B acyl-CoA synthetase medium-chain family member 2B 905502 1 1 1 1 0 0 0 0 1 0 0.44 1.00 -6478 GK2 glycerol kinase 2 844662 1 1 1 1 0 0 0 0 1 0 0.44 1.00 -6479 SPAG16 sperm associated antigen 16 930852 1 1 1 2 1 0 0 0 0 0 0.44 1.00 -6480 PPP1R7 protein phosphatase 1, regulatory (inhibitor) subunit 7 540462 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6481 ADAM11 ADAM metallopeptidase domain 11 831480 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6482 GLYATL1 glycine-N-acyltransferase-like 1 508014 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6483 TTC39A 825903 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6484 TGS1 trimethylguanosine synthase homolog (S. cerevisiae) 1324284 2 2 2 0 0 1 1 0 0 0 0.44 1.00 -6485 LAMA4 laminin, alpha 4 2930460 4 4 4 0 1 3 0 0 0 0 0.44 1.00 -6486 ENO3 enolase 3 (beta, muscle) 683943 1 1 1 0 0 0 0 1 0 0 0.44 1.00 -6487 ABL1 c-abl oncogene 1, receptor tyrosine kinase 1710618 2 2 2 0 0 0 0 1 1 0 0.44 1.00 -6488 VNN1 vanin 1 795990 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6489 RAGE renal tumor antigen 657579 1 1 1 1 0 1 0 0 0 0 0.44 1.00 -6490 FAM81B family with sequence similarity 81, member B 709293 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6491 RARS arginyl-tRNA synthetase 1010958 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6492 OAS2 2'-5'-oligoadenylate synthetase 2, 69/71kDa 1161030 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6493 DDX56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 770640 1 1 1 0 0 0 0 1 0 0 0.44 1.00 -6494 EPN2 epsin 2 748839 1 1 1 0 0 0 0 0 1 0 0.44 1.00 -6495 ZNF169 zinc finger protein 169 926796 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6496 IL18R1 interleukin 18 receptor 1 844662 1 1 1 2 0 0 1 0 0 0 0.44 1.00 -6497 GRIPAP1 GRIP1 associated protein 1 1360788 2 2 2 1 0 2 0 0 0 0 0.44 1.00 -6498 RABGGTB Rab geranylgeranyltransferase, beta subunit 523224 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6499 ATF7IP activating transcription factor 7 interacting protein 1961583 2 2 2 0 0 2 0 0 0 0 0.44 1.00 -6500 ZNF644 zinc finger protein 644 2030028 2 2 2 0 0 1 0 0 1 0 0.44 1.00 -6501 KIAA1614 KIAA1614 1550406 2 2 2 0 0 1 0 1 0 0 0.44 1.00 -6502 ADCY3 adenylate cyclase 3 1556997 2 2 2 1 0 1 1 0 0 0 0.44 1.00 -6503 DACH2 dachshund homolog 2 (Drosophila) 936936 1 1 1 3 0 0 1 0 0 0 0.44 1.00 -6504 BLZF1 basic leucine zipper nuclear factor 1 (JEM-1) 622089 1 1 1 1 0 0 0 1 0 0 0.44 1.00 -6505 C6orf170 chromosome 6 open reading frame 170 1978314 2 2 2 0 0 1 0 0 1 0 0.44 1.00 -6506 PER3 period homolog 3 (Drosophila) 1803906 2 2 2 0 1 0 0 0 1 0 0.44 1.00 -6507 TTC38 609414 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6508 CAPN11 calpain 11 1077882 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6509 KCNS3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 750360 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6510 CMKLR1 chemokine-like receptor 1 569361 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6511 GPLD1 glycosylphosphatidylinositol specific phospholipase D1 1298934 2 2 2 0 0 1 1 0 0 0 0.44 1.00 -6512 WIPI1 WD repeat domain, phosphoinositide interacting 1 663663 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6513 PANK2 pantothenate kinase 2 (Hallervorden-Spatz syndrome) 562263 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6514 NEUROD1 neurogenic differentiation 1 545025 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6515 TUBB4 tubulin, beta 4 654030 1 1 1 1 0 0 0 0 1 0 0.44 1.00 -6516 SGMS1 sphingomyelin synthase 1 639834 1 1 1 1 0 1 0 0 0 0 0.44 1.00 -6517 SGSM3 small G protein signaling modulator 3 779259 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6518 RFTN2 raftlin family member 2 727038 1 1 1 0 0 0 0 1 0 0 0.44 1.00 -6519 ATP6V1H ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H 731094 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6520 HELQ 1712646 2 2 2 0 0 1 1 0 0 0 0.44 1.00 -6521 CCDC132 coiled-coil domain containing 132 1545843 2 2 2 0 1 0 0 0 1 0 0.44 1.00 -6522 GH2 growth hormone 2 512577 1 1 1 1 1 0 0 0 0 0 0.44 1.00 -6523 UBLCP1 ubiquitin-like domain containing CTD phosphatase 1 505479 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6524 NUDT13 nudix (nucleoside diphosphate linked moiety X)-type motif 13 553137 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6525 IL22RA1 interleukin 22 receptor, alpha 1 790920 1 1 1 0 0 0 1 0 0 0 0.44 1.00 -6526 C2orf63 chromosome 2 open reading frame 63 915135 1 1 1 0 1 0 0 0 0 0 0.44 1.00 -6527 LEPREL2 leprecan-like 2 816270 1 1 1 0 0 1 0 0 0 0 0.44 1.00 -6528 IWS1 IWS1 homolog (S. cerevisiae) 1256346 1 1 1 2 0 0 0 0 1 0 0.44 1.00 -6529 PCBP1 poly(rC) binding protein 1 544011 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6530 COL4A2 collagen, type IV, alpha 2 2102529 2 2 2 0 0 0 2 0 0 0 0.45 1.00 -6531 RUFY3 RUN and FYVE domain containing 3 1022112 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6532 APCDD1 adenomatosis polyposis coli down-regulated 1 762021 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -6533 DOPEY2 dopey family member 2 3365466 5 4 5 1 1 2 2 0 0 0 0.45 1.00 -6534 TULP1 tubby like protein 1 642876 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6535 OVCH2 ovochymase 2 867477 1 1 1 1 1 0 0 0 0 0 0.45 1.00 -6536 FTSJD2 1318200 2 2 2 1 2 0 0 0 0 0 0.45 1.00 -6537 RBM27 RNA binding motif protein 27 1624428 2 2 2 0 0 1 1 0 0 0 0.45 1.00 -6538 APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B 598767 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6539 LRIT1 leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 768612 1 1 1 0 0 0 0 1 0 0 0.45 1.00 -6540 TFRC transferrin receptor (p90, CD71) 1193478 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -6541 CLCNKB chloride channel Kb 1057095 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6542 HAO2 hydroxyacid oxidase 2 (long chain) 549588 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6543 ZBTB40 zinc finger and BTB domain containing 40 1920516 2 2 2 0 0 1 0 0 1 0 0.45 1.00 -6544 KLHL28 kelch-like 28 (Drosophila) 878124 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6545 TAAR2 trace amine associated receptor 2 539448 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6546 FCGR1A Fc fragment of IgG, high affinity Ia, receptor (CD64) 570375 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6547 NOS1 nitric oxide synthase 1 (neuronal) 2239419 3 3 3 0 2 0 1 0 0 0 0.45 1.00 -6548 EPHA7 EPH receptor A7 1553955 2 2 2 0 0 0 2 0 0 0 0.45 1.00 -6549 CHST1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 628680 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6550 CLEC14A C-type lectin domain family 14, member A 525252 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6551 GARS glycyl-tRNA synthetase 1045434 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -6552 RFFL ring finger and FYVE-like domain containing 1 526266 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6553 HSPG2 heparan sulfate proteoglycan 2 4520919 5 5 5 1 1 2 1 0 1 0 0.45 1.00 -6554 CCDC125 coiled-coil domain containing 125 801060 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6555 ITGB1BP2 integrin beta 1 binding protein (melusin) 2 551616 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6556 ANKRD32 ankyrin repeat domain 32 698646 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6557 SORT1 sortilin 1 1148862 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -6558 CXCR7 chemokine (C-X-C motif) receptor 7 554151 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6559 SMC1A structural maintenance of chromosomes 1A 1916967 2 2 2 0 0 0 2 0 0 0 0.45 1.00 -6560 DSEL dermatan sulfate epimerase-like 1862211 2 2 2 0 0 1 0 0 1 0 0.45 1.00 -6561 TTN titin 56224272 77 62 77 9 18 16 27 6 6 4 0.45 1.00 -6562 SGCE sarcoglycan, epsilon 659100 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6563 CCDC8 coiled-coil domain containing 8 819819 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6564 SLC16A1 solute carrier family 16, member 1 (monocarboxylic acid transporter 1) 770133 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6565 CNGA1 cyclic nucleotide gated channel alpha 1 1044927 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6566 ATP8B1 ATPase, class I, type 8B, member 1 1842945 2 2 2 0 1 0 0 0 1 0 0.45 1.00 -6567 FAM186B 1373970 2 2 2 0 0 2 0 0 0 0 0.45 1.00 -6568 RIC8B resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 766077 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6569 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 559728 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6570 DOCK10 dedicator of cytokinesis 10 3231618 4 4 4 0 1 1 2 0 0 0 0.45 1.00 -6571 CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit 3500835 4 4 4 3 0 2 1 1 0 0 0.45 1.00 -6572 SV2A synaptic vesicle glycoprotein 2A 1154439 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6573 ANXA3 annexin A3 517140 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6574 POM121 POM121 membrane glycoprotein (rat) 1297413 2 2 2 0 1 0 1 0 0 0 0.45 1.00 -6575 PDE4A phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) 1290315 1 1 1 2 0 0 1 0 0 0 0.45 1.00 -6576 TKTL1 transketolase-like 1 934401 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6577 GIMAP2 GTPase, IMAP family member 2 518154 1 1 1 1 0 0 1 0 0 0 0.45 1.00 -6578 SPATA17 spermatogenesis associated 17 570882 1 1 1 1 1 0 0 0 0 0 0.45 1.00 -6579 PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) 3553056 4 4 4 0 2 0 0 1 1 0 0.45 1.00 -6580 GPR113 G protein-coupled receptor 113 1314144 2 2 2 0 0 0 2 0 0 0 0.45 1.00 -6581 KCNJ1 potassium inwardly-rectifying channel, subfamily J, member 1 600288 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6582 CHRNB3 cholinergic receptor, nicotinic, beta 3 710307 1 1 1 1 0 0 1 0 0 0 0.45 1.00 -6583 SPTB spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) 3491202 4 4 4 1 1 2 0 0 1 0 0.45 1.00 -6584 RASA2 RAS p21 protein activator 2 1272063 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6585 STRC stereocilin 1246206 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6586 ZNF12 zinc finger protein 12 1069770 1 1 1 0 0 0 0 1 0 0 0.45 1.00 -6587 FAM188B 1098162 1 1 1 1 0 0 0 0 1 0 0.45 1.00 -6588 OSBPL9 oxysterol binding protein-like 9 1155960 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6589 IRS1 insulin receptor substrate 1 1827228 1 1 1 1 0 0 0 0 1 0 0.45 1.00 -6590 CCDC114 coiled-coil domain containing 114 739206 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6591 SLAMF1 signaling lymphocytic activation molecule family member 1 525252 1 1 1 1 1 0 0 0 0 0 0.45 1.00 -6592 ZNF48 zinc finger protein 48 902967 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6593 AMIGO2 adhesion molecule with Ig-like domain 2 797511 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -6594 C11orf49 chromosome 11 open reading frame 49 602823 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6595 PDK1 pyruvate dehydrogenase kinase, isozyme 1 585585 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6596 RCOR3 REST corepressor 3 797511 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6597 FER1L6 fer-1-like 6 (C. elegans) 2907138 2 2 1 1 0 0 0 0 2 0 0.45 1.00 -6598 ZNF43 zinc finger protein 43 1240122 1 1 1 0 0 0 0 1 0 0 0.45 1.00 -6599 AGXT2L2 alanine-glyoxylate aminotransferase 2-like 2 678366 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6600 ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 2416362 3 3 3 0 1 0 2 0 0 0 0.45 1.00 -6601 SLFN5 schlafen family member 5 1364844 2 2 2 1 1 0 0 1 0 0 0.45 1.00 -6602 ANXA4 annexin A4 514098 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6603 EGR1 early growth response 1 830973 1 1 1 1 0 0 0 1 0 0 0.45 1.00 -6604 SEMA7A semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) 943020 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6605 KCNA2 potassium voltage-gated channel, shaker-related subfamily, member 2 762528 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6606 LPL lipoprotein lipase 697632 1 1 1 1 1 0 0 0 0 0 0.45 1.00 -6607 TTC14 tetratricopeptide repeat domain 14 1128582 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6608 ALKBH1 alkB, alkylation repair homolog 1 (E. coli) 605358 1 1 1 0 0 0 0 1 0 0 0.45 1.00 -6609 GOLGA2 golgi autoantigen, golgin subfamily a, 2 1533168 2 2 2 0 0 2 0 0 0 0 0.45 1.00 -6610 CCDC11 coiled-coil domain containing 11 799539 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6611 ZNF202 zinc finger protein 202 999297 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6612 ARSF arylsulfatase F 919191 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6613 GABRR1 gamma-aminobutyric acid (GABA) receptor, rho 1 750360 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6614 EXOC6B exocyst complex component 6B 1211730 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6615 MIA2 melanoma inhibitory activity 2 1008423 1 1 1 0 0 0 1 0 0 0 0.45 1.00 -6616 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 3178890 4 4 4 1 1 3 0 0 0 0 0.45 1.00 -6617 KIF16B kinesin family member 16B 2031549 2 2 2 0 1 0 0 0 1 0 0.45 1.00 -6618 ZER1 zer-1 homolog (C. elegans) 1111344 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6619 MFAP1 microfibrillar-associated protein 1 687492 1 1 1 0 0 0 0 1 0 0 0.45 1.00 -6620 CDH18 cadherin 18, type 2 1225419 1 1 1 0 0 0 0 1 0 0 0.45 1.00 -6621 SYNE1 spectrin repeat containing, nuclear envelope 1 13712322 16 16 16 5 6 3 3 0 4 0 0.45 1.00 -6622 ACE2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 1262430 1 1 1 0 0 0 0 0 1 0 0.45 1.00 -6623 BACE1 beta-site APP-cleaving enzyme 1 691041 1 1 1 0 1 0 0 0 0 0 0.45 1.00 -6624 GPC6 glypican 6 831987 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6625 P2RX4 purinergic receptor P2X, ligand-gated ion channel, 4 546039 1 1 1 1 0 1 0 0 0 0 0.45 1.00 -6626 C19orf61 chromosome 19 open reading frame 61 762528 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6627 CTNNA2 catenin (cadherin-associated protein), alpha 2 1412502 2 2 2 2 0 2 0 0 0 0 0.45 1.00 -6628 GCKR glucokinase (hexokinase 4) regulator 990678 1 1 1 0 0 1 0 0 0 0 0.45 1.00 -6629 ZFP106 zinc finger protein 106 homolog (mouse) 2904096 3 3 3 0 0 0 1 0 2 0 0.46 1.00 -6630 LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 988143 1 1 1 0 0 0 0 0 1 0 0.46 1.00 -6631 C3orf15 chromosome 3 open reading frame 15 1137708 1 1 1 1 0 1 0 0 0 0 0.46 1.00 -6632 PLOD3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 989157 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6633 XYLT2 xylosyltransferase II 1139229 1 1 1 1 0 0 1 0 0 0 0.46 1.00 -6634 COL24A1 collagen, type XXIV, alpha 1 2730195 2 2 2 0 1 0 0 0 1 0 0.46 1.00 -6635 ZRANB2 zinc finger, RAN-binding domain containing 2 542997 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6636 ZNF652 zinc finger protein 652 933387 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6637 C12orf51 chromosome 12 open reading frame 51 5473065 6 6 6 0 0 2 3 0 1 0 0.46 1.00 -6638 FZD9 frizzled homolog 9 (Drosophila) 528294 1 1 1 1 1 0 0 0 0 0 0.46 1.00 -6639 TMC3 transmembrane channel-like 3 1640652 2 2 2 1 0 2 0 0 0 0 0.46 1.00 -6640 KIAA0146 KIAA0146 1163565 1 1 1 2 0 1 0 0 0 0 0.46 1.00 -6641 ZDHHC6 zinc finger, DHHC-type containing 6 620568 1 1 1 0 0 0 0 1 0 0 0.46 1.00 -6642 CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 765063 1 1 1 1 1 0 0 0 0 0 0.46 1.00 -6643 UBR5 ubiquitin protein ligase E3 component n-recognin 5 4344990 4 4 4 1 2 1 0 0 1 0 0.46 1.00 -6644 SLC5A5 solute carrier family 5 (sodium iodide symporter), member 5 823368 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6645 PRKDC protein kinase, DNA-activated, catalytic polypeptide 6175260 7 7 7 1 2 3 2 0 0 0 0.46 1.00 -6646 PI4K2A phosphatidylinositol 4-kinase type 2 alpha 525759 1 1 1 1 0 1 0 0 0 0 0.46 1.00 -6647 YTHDF1 YTH domain family, member 1 831480 1 1 1 3 0 0 0 0 1 0 0.46 1.00 -6648 SIRPB2 signal-regulatory protein beta 2 520689 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6649 IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1 909558 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6650 MPO myeloperoxidase 946062 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6651 ARHGAP31 2222181 3 3 3 0 1 1 1 0 0 0 0.46 1.00 -6652 MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 1184352 1 1 1 1 1 0 0 0 0 0 0.46 1.00 -6653 EGF epidermal growth factor (beta-urogastrone) 1886040 2 2 2 0 1 0 0 1 0 0 0.46 1.00 -6654 ESX1 ESX homeobox 1 547560 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6655 TANK TRAF family member-associated NFKB activator 678873 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6656 BVES blood vessel epicardial substance 563277 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6657 FAM120B family with sequence similarity 120B 1300455 1 1 1 0 0 0 0 0 1 0 0.46 1.00 -6658 NR4A2 nuclear receptor subfamily 4, group A, member 2 757458 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6659 C6orf150 chromosome 6 open reading frame 150 570375 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6660 TRPC3 transient receptor potential cation channel, subfamily C, member 3 1315665 2 2 2 2 1 1 0 0 0 0 0.46 1.00 -6661 B3GNT4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 545025 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6662 MYBPC1 myosin binding protein C, slow type 1855620 2 2 2 1 0 0 1 1 0 0 0.46 1.00 -6663 BMP5 bone morphogenetic protein 5 706251 1 1 1 0 0 0 0 1 0 0 0.46 1.00 -6664 SETBP1 SET binding protein 1 2212548 3 3 3 0 0 1 2 0 0 0 0.46 1.00 -6665 IL1R1 interleukin 1 receptor, type I 887250 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6666 PRDM15 PR domain containing 15 1156974 1 1 1 1 0 0 0 0 1 0 0.46 1.00 -6667 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) 604344 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6668 DUOX1 dual oxidase 1 2204436 3 3 3 1 1 2 0 0 0 0 0.46 1.00 -6669 ZNF329 zinc finger protein 329 826410 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6670 TTLL7 tubulin tyrosine ligase-like family, member 7 1391208 2 2 2 0 2 0 0 0 0 0 0.46 1.00 -6671 LRRIQ4 863421 1 1 1 1 0 1 0 0 0 0 0.46 1.00 -6672 EIF5B eukaryotic translation initiation factor 5B 1893645 2 2 2 0 1 0 0 1 0 0 0.46 1.00 -6673 LRP10 low density lipoprotein receptor-related protein 10 1100190 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6674 DUSP27 dual specificity phosphatase 27 (putative) 1558011 2 2 2 0 1 1 0 0 0 0 0.46 1.00 -6675 TSC1 tuberous sclerosis 1 1814553 2 2 2 1 0 2 0 0 0 0 0.46 1.00 -6676 HIRA HIR histone cell cycle regulation defective homolog A (S. cerevisiae) 1311102 1 1 1 1 0 0 0 0 1 0 0.46 1.00 -6677 TEX11 testis expressed 11 1467258 2 2 2 0 1 1 0 0 0 0 0.46 1.00 -6678 KCNH3 potassium voltage-gated channel, subfamily H (eag-related), member 3 1233531 1 1 1 1 0 1 0 0 0 0 0.46 1.00 -6679 GLT25D1 glycosyltransferase 25 domain containing 1 735657 1 1 1 0 0 0 0 1 0 0 0.46 1.00 -6680 PAPD5 PAP associated domain containing 5 728052 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6681 CASC3 cancer susceptibility candidate 3 978003 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6682 PZP pregnancy-zone protein 2328651 3 3 3 1 1 0 2 0 0 0 0.46 1.00 -6683 AMOT angiomotin 996762 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6684 HRH4 histamine receptor H4 600795 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6685 KIF19 kinesin family member 19 856323 1 1 1 3 1 0 0 0 0 0 0.46 1.00 -6686 VCPIP1 valosin containing protein (p97)/p47 complex interacting protein 1 1832298 1 1 1 2 0 0 0 0 1 0 0.46 1.00 -6687 LLGL1 lethal giant larvae homolog 1 (Drosophila) 1138215 1 1 1 1 0 0 1 0 0 0 0.46 1.00 -6688 PRKCI protein kinase C, iota 891306 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6689 CRAMP1L Crm, cramped-like (Drosophila) 764049 1 1 1 1 0 0 1 0 0 0 0.46 1.00 -6690 GPR128 G protein-coupled receptor 128 1246206 1 1 1 2 0 0 1 0 0 0 0.46 1.00 -6691 BRE brain and reproductive organ-expressed (TNFRSF1A modulator) 713349 1 1 1 0 0 0 0 0 1 0 0.46 1.00 -6692 KIAA1199 KIAA1199 2057913 2 2 2 2 0 0 1 1 0 0 0.46 1.00 -6693 ZNF429 zinc finger protein 429 1017549 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6694 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 607386 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6695 ARFIP1 ADP-ribosylation factor interacting protein 1 (arfaptin 1) 585078 1 1 1 0 0 0 1 0 0 0 0.46 1.00 -6696 MAPT microtubule-associated protein tau 928317 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6697 NADK NAD kinase 651495 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6698 EGR2 early growth response 2 (Krox-20 homolog, Drosophila) 713856 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6699 DDN dendrin 827424 1 1 1 0 0 0 0 1 0 0 0.46 1.00 -6700 KBTBD5 kelch repeat and BTB (POZ) domain containing 5 722982 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6701 TKT transketolase (Wernicke-Korsakoff syndrome) 898404 1 1 1 0 0 1 0 0 0 0 0.46 1.00 -6702 KRT37 keratin 37 652509 1 1 1 0 1 0 0 0 0 0 0.46 1.00 -6703 CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 719433 1 1 1 0 0 0 0 1 0 0 0.46 1.00 -6704 TFCP2L1 transcription factor CP2-like 1 671268 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6705 JAK3 Janus kinase 3 (a protein tyrosine kinase, leukocyte) 1281696 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -6706 ZNF823 zinc finger protein 823 934401 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -6707 CSRNP3 899418 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6708 NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1 1065207 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -6709 KDM3A 1965132 2 2 2 0 1 0 0 1 0 0 0.47 1.00 -6710 LAMB2 laminin, beta 2 (laminin S) 2800161 3 3 3 1 0 1 1 0 1 0 0.47 1.00 -6711 COQ3 coenzyme Q3 homolog, methyltransferase (S. cerevisiae) 576966 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6712 PCDHB13 protocadherin beta 13 1209195 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -6713 FBXL2 F-box and leucine-rich repeat protein 2 671775 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -6714 PHF16 PHD finger protein 16 1273584 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -6715 C22orf28 chromosome 22 open reading frame 28 793962 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6716 NUP205 nucleoporin 205kDa 3148977 4 4 4 0 1 0 1 1 1 0 0.47 1.00 -6717 DNAI2 dynein, axonemal, intermediate chain 2 900939 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -6718 AK7 adenylate kinase 7 1137708 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6719 SGOL1 shugoshin-like 1 (S. pombe) 881166 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6720 FAM21C family with sequence similarity 21, member C 1371435 2 2 2 0 1 1 0 0 0 0 0.47 1.00 -6721 SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 1898715 2 2 2 0 0 0 0 1 1 0 0.47 1.00 -6722 AKAP12 A kinase (PRKA) anchor protein (gravin) 12 2648568 2 2 2 1 0 0 1 0 1 0 0.47 1.00 -6723 PRAMEF4 PRAME family member 4 734643 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -6724 LIG1 ligase I, DNA, ATP-dependent 1205139 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6725 TMEM104 transmembrane protein 104 774189 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6726 BAT5 HLA-B associated transcript 5 883194 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -6727 GSS glutathione synthetase 746811 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6728 ZCCHC8 zinc finger, CCHC domain containing 8 961272 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6729 PGM1 phosphoglucomutase 1 906009 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6730 PLEKHG4B pleckstrin homology domain containing, family G (with RhoGef domain) member 4B 848718 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -6731 UBE4B ubiquitination factor E4B (UFD2 homolog, yeast) 2038647 2 2 2 1 0 2 0 0 0 0 0.47 1.00 -6732 ZNF491 zinc finger protein 491 668226 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -6733 TMEM63B transmembrane protein 63B 1313130 2 1 2 1 0 0 0 0 0 2 0.47 1.00 -6734 MRS2 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) 611442 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6735 MGAT4C mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 734643 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6736 PCDHGB4 protocadherin gamma subfamily B, 4 1254318 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -6737 P4HA3 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III 751881 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6738 AKAP9 A kinase (PRKA) anchor protein (yotiao) 9 6006429 7 7 7 2 1 2 0 3 1 0 0.47 1.00 -6739 CEP192 centrosomal protein 192kDa 3071406 4 4 4 0 1 1 1 0 1 0 0.47 1.00 -6740 ZSWIM3 zinc finger, SWIM-type containing 3 1064193 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6741 NBR1 neighbor of BRCA1 gene 1 551616 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -6742 CHPF chondroitin polymerizing factor 952653 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -6743 CLPTM1 cleft lip and palate associated transmembrane protein 1 1008930 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6744 C14orf106 chromosome 14 open reading frame 106 1708590 2 2 2 0 0 0 0 1 1 0 0.47 1.00 -6745 COG6 component of oligomeric golgi complex 6 959751 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6746 WDR37 WD repeat domain 37 779259 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -6747 MED13L mediator complex subunit 13-like 3387267 4 4 4 0 2 1 0 0 1 0 0.47 1.00 -6748 ENTPD6 ectonucleoside triphosphate diphosphohydrolase 6 (putative function) 709293 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6749 ANO2 1560546 2 2 2 2 1 1 0 0 0 0 0.47 1.00 -6750 MDM1 Mdm1 nuclear protein homolog (mouse) 1155453 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6751 ZNF174 zinc finger protein 174 669240 1 1 1 1 0 0 1 0 0 0 0.47 1.00 -6752 EPHB6 EPH receptor B6 1583868 2 2 2 1 0 1 1 0 0 0 0.47 1.00 -6753 CREM cAMP responsive element modulator 655044 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6754 CFB complement factor B 1200069 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6755 ZNF416 zinc finger protein 416 894348 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -6756 DHX15 DEAH (Asp-Glu-Ala-His) box polypeptide 15 1201083 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -6757 TRAF6 TNF receptor-associated factor 6 806130 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6758 DHX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 2156271 3 3 3 0 1 0 1 1 0 0 0.47 1.00 -6759 UBR4 ubiquitin protein ligase E3 component n-recognin 4 7798674 9 9 8 4 1 3 4 1 0 0 0.47 1.00 -6760 FRY furry homolog (Drosophila) 4708002 6 6 6 1 2 1 0 1 2 0 0.47 1.00 -6761 DDX10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 1312116 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -6762 CBX4 chromobox homolog 4 (Pc class homolog, Drosophila) 556179 1 1 1 0 1 0 0 0 0 0 0.47 1.00 -6763 ZBTB6 zinc finger and BTB domain containing 6 648453 3 1 3 1 0 0 1 1 1 0 0.47 1.00 -6764 EHD3 EH-domain containing 3 821340 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -6765 C4orf35 chromosome 4 open reading frame 35 604344 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -6766 CD163 CD163 molecule 1792245 2 2 2 0 0 1 0 1 0 0 0.47 1.00 -6767 DLD dihydrolipoamide dehydrogenase 804102 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6768 CD244 CD244 molecule, natural killer cell receptor 2B4 582543 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6769 HP haptoglobin 627666 1 1 1 1 0 0 0 1 0 0 0.47 1.00 -6770 LRRC48 leucine rich repeat containing 48 601302 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6771 ZNF671 zinc finger protein 671 749853 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -6772 MED24 mediator complex subunit 24 1341522 1 1 1 1 0 0 0 0 1 0 0.47 1.00 -6773 TET3 tet oncogene family member 3 2295189 3 3 3 0 1 1 1 0 0 0 0.47 1.00 -6774 ZNF449 zinc finger protein 449 797511 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6775 POU2F3 POU class 2 homeobox 3 674817 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -6776 ISM2 810693 1 1 1 1 0 1 0 0 0 0 0.47 1.00 -6777 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 559728 1 1 1 2 0 1 0 0 0 0 0.47 1.00 -6778 ZNF551 zinc finger protein 551 983580 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6779 RHBDF2 rhomboid 5 homolog 2 (Drosophila) 1111851 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6780 GAS2L3 growth arrest-specific 2 like 3 1073319 1 1 1 1 0 0 1 0 0 0 0.47 1.00 -6781 ZNF407 zinc finger protein 407 2820441 3 3 3 0 0 0 2 1 0 0 0.47 1.00 -6782 CCDC147 coiled-coil domain containing 147 1364337 2 2 2 2 0 0 2 0 0 0 0.47 1.00 -6783 C7orf58 chromosome 7 open reading frame 58 1630005 2 2 2 0 1 0 1 0 0 0 0.47 1.00 -6784 CCDC150 coiled-coil domain containing 150 1732926 2 2 2 0 0 0 2 0 0 0 0.47 1.00 -6785 GPR179 G protein-coupled receptor 179 3170778 4 4 4 1 3 0 1 0 0 0 0.47 1.00 -6786 NPR2 natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) 1604148 2 2 2 0 0 1 0 1 0 0 0.47 1.00 -6787 HOXB3 homeobox B3 619047 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -6788 N4BP1 NEDD4 binding protein 1 1224405 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6789 ACSL3 acyl-CoA synthetase long-chain family member 3 1125033 1 1 1 0 0 1 0 0 0 0 0.47 1.00 -6790 ALG6 asparagine-linked glycosylation 6 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) 801060 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6791 DRD2 dopamine receptor D2 689013 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -6792 SRRM2 serine/arginine repetitive matrix 2 4039776 6 5 6 3 1 1 3 0 1 0 0.47 1.00 -6793 GLI3 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 2174523 3 2 3 2 0 1 0 1 1 0 0.47 1.00 -6794 SEMA3E sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E 1214772 1 1 1 1 1 0 0 0 0 0 0.47 1.00 -6795 RANBP6 RAN binding protein 6 1684254 2 2 2 0 0 0 1 1 0 0 0.47 1.00 -6796 FKTN fukutin 720954 1 1 1 0 0 0 0 1 0 0 0.47 1.00 -6797 FNDC3A fibronectin type III domain containing 3A 1879956 1 1 1 0 0 0 0 0 1 0 0.47 1.00 -6798 DTNBP1 dystrobrevin binding protein 1 604851 1 1 1 0 0 0 1 0 0 0 0.47 1.00 -6799 HSD17B2 hydroxysteroid (17-beta) dehydrogenase 2 600288 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6800 MTRF1 mitochondrial translational release factor 1 696618 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6801 MARCO macrophage receptor with collagenous structure 826410 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6802 AP2A2 adaptor-related protein complex 2, alpha 2 subunit 682422 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6803 UMPS uridine monophosphate synthetase 743769 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6804 ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 1299948 1 1 1 1 0 0 0 0 1 0 0.48 1.00 -6805 PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 570882 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6806 MPHOSPH9 M-phase phosphoprotein 9 1610232 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -6807 FBXO24 F-box protein 24 903981 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6808 PRR5L 577473 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6809 ALDH9A1 aldehyde dehydrogenase 9 family, member A1 728559 1 1 1 1 0 1 0 0 0 0 0.48 1.00 -6810 UGT2A1 UDP glucuronosyltransferase 2 family, polypeptide A1 815256 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6811 COL5A1 collagen, type V, alpha 1 1980849 2 2 2 1 1 1 0 0 0 0 0.48 1.00 -6812 ZNF681 zinc finger protein 681 990678 1 1 1 0 0 0 0 1 0 0 0.48 1.00 -6813 RIMS1 regulating synaptic membrane exocytosis 1 2206971 3 3 3 0 1 0 2 0 0 0 0.48 1.00 -6814 RBMS1 RNA binding motif, single stranded interacting protein 1 637806 1 1 1 0 0 0 0 1 0 0 0.48 1.00 -6815 SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 1217814 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -6816 PHF3 PHD finger protein 3 3133260 4 4 4 0 0 1 2 1 0 0 0.48 1.00 -6817 ADARB1 adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) 869505 1 1 1 1 0 1 0 0 0 0 0.48 1.00 -6818 KRTAP10-4 keratin associated protein 10-4 613470 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6819 PCDH10 protocadherin 10 1360281 1 1 1 2 0 0 0 0 1 0 0.48 1.00 -6820 TIMM50 translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 663663 1 1 1 0 0 0 0 1 0 0 0.48 1.00 -6821 CAGE1 cancer antigen 1 1034787 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6822 WDR62 WD repeat domain 62 2162355 2 2 2 0 0 0 1 0 1 0 0.48 1.00 -6823 SLC26A7 solute carrier family 26, member 7 1066728 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6824 IL13RA1 interleukin 13 receptor, alpha 1 626652 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6825 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 566826 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6826 RRBP1 ribosome binding protein 1 homolog 180kDa (dog) 1295892 1 1 1 0 0 0 0 1 0 0 0.48 1.00 -6827 C6orf142 chromosome 6 open reading frame 142 724503 1 1 1 2 0 0 1 0 0 0 0.48 1.00 -6828 RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 1006395 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6829 GPR107 G protein-coupled receptor 107 804102 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6830 FASTKD5 FAST kinase domains 5 1165593 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6831 RASAL2 RAS protein activator like 2 1830270 2 2 2 0 0 2 0 0 0 0 0.48 1.00 -6832 CLCNKA chloride channel Ka 969891 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6833 LUC7L2 LUC7-like 2 (S. cerevisiae) 585078 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6834 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 1255332 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6835 PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) 1363830 2 1 2 0 0 0 0 0 0 2 0.48 1.00 -6836 TRPV6 transient receptor potential cation channel, subfamily V, member 6 1134159 1 1 1 2 0 0 1 0 0 0 0.48 1.00 -6837 PLXND1 plexin D1 1932684 2 2 2 0 0 1 0 0 1 0 0.48 1.00 -6838 GMPS guanine monphosphate synthetase 1072305 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6839 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 613470 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6840 MYBPC2 myosin binding protein C, fast type 1316679 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6841 CLTCL1 clathrin, heavy chain-like 1 1963104 2 2 2 0 0 2 0 0 0 0 0.48 1.00 -6842 ZNF350 zinc finger protein 350 818805 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -6843 ARMC5 armadillo repeat containing 5 937443 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6844 WASL Wiskott-Aldrich syndrome-like 730587 1 1 1 1 0 0 0 0 1 0 0.48 1.00 -6845 MVP major vault protein 1341522 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -6846 LATS1 LATS, large tumor suppressor, homolog 1 (Drosophila) 1734447 2 2 2 0 0 0 0 1 1 0 0.48 1.00 -6847 PALLD palladin, cytoskeletal associated protein 1722279 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -6848 SLCO4A1 solute carrier organic anion transporter family, member 4A1 694590 1 1 1 1 1 0 0 0 0 0 0.48 1.00 -6849 ZRANB1 zinc finger, RAN-binding domain containing 1 1096641 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6850 CIR1 694083 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6851 PCDHGA3 protocadherin gamma subfamily A, 3 1460667 2 2 2 1 0 2 0 0 0 0 0.48 1.00 -6852 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 698139 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6853 TLR5 toll-like receptor 5 1308567 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -6854 ANKRD35 ankyrin repeat domain 35 1454583 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -6855 C11orf63 chromosome 11 open reading frame 63 1233531 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6856 SLC44A3 solute carrier family 44, member 3 952653 1 1 1 1 1 0 0 0 0 0 0.48 1.00 -6857 EP300 E1A binding protein p300 3736083 3 3 2 1 1 0 0 0 2 0 0.48 1.00 -6858 SQRDL sulfide quinone reductase-like (yeast) 583557 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6859 CTR9 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 1811511 2 2 2 0 0 1 1 0 0 0 0.48 1.00 -6860 MBTD1 mbt domain containing 1 628680 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6861 WASF1 WAS protein family, member 1 867984 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6862 SYNE2 spectrin repeat containing, nuclear envelope 2 10736739 14 13 14 4 4 3 5 1 1 0 0.48 1.00 -6863 C1orf51 chromosome 1 open reading frame 51 597246 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6864 PARP9 poly (ADP-ribose) polymerase family, member 9 1347606 1 1 1 0 0 0 0 0 1 0 0.48 1.00 -6865 SLC29A1 solute carrier family 29 (nucleoside transporters), member 1 719433 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6866 ADAM33 ADAM metallopeptidase domain 33 672789 1 1 1 1 0 0 0 0 1 0 0.48 1.00 -6867 MACROD2 MACRO domain containing 2 694083 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6868 ERLEC1 749346 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6869 LRRCC1 leucine rich repeat and coiled-coil domain containing 1 1554969 2 2 2 0 0 0 1 1 0 0 0.48 1.00 -6870 CENPT centromere protein T 823368 1 1 1 0 0 0 1 0 0 0 0.48 1.00 -6871 MYH1 myosin, heavy chain 1, skeletal muscle, adult 3027804 4 4 4 1 1 2 0 1 0 0 0.48 1.00 -6872 TBX15 T-box 15 770133 1 1 1 0 0 1 0 0 0 0 0.48 1.00 -6873 FCRL1 Fc receptor-like 1 705237 1 1 1 0 1 0 0 0 0 0 0.48 1.00 -6874 C6orf81 chromosome 6 open reading frame 81 571896 1 1 1 1 1 0 0 0 0 0 0.48 1.00 -6875 PIAS2 protein inhibitor of activated STAT, 2 998283 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6876 CDHR5 680901 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6877 DOCK5 dedicator of cytokinesis 5 2769741 3 3 3 1 1 0 0 0 2 0 0.49 1.00 -6878 GPD2 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 1139736 1 1 1 0 0 0 0 1 0 0 0.49 1.00 -6879 XRCC1 X-ray repair complementing defective repair in Chinese hamster cells 1 990678 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6880 DYRK3 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 871533 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -6881 SERPINI2 serpin peptidase inhibitor, clade I (pancpin), member 2 633750 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6882 ODZ2 odz, odd Oz/ten-m homolog 2 (Drosophila) 3701100 3 3 3 2 0 0 1 1 1 0 0.49 1.00 -6883 AKAP8 A kinase (PRKA) anchor protein 8 1016535 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6884 ZNF582 zinc finger protein 582 795990 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6885 BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide 610935 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6886 EYA3 eyes absent homolog 3 (Drosophila) 907530 1 1 1 0 0 0 0 1 0 0 0.49 1.00 -6887 EDC4 enhancer of mRNA decapping 4 2134470 2 2 2 1 1 0 0 0 1 0 0.49 1.00 -6888 ANKZF1 ankyrin repeat and zinc finger domain containing 1 1132131 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6889 ASS1 argininosuccinate synthetase 1 633243 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6890 BEND2 1186380 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -6891 FTSJ3 FtsJ homolog 3 (E. coli) 1330368 1 1 1 1 0 0 1 0 0 0 0.49 1.00 -6892 FEN1 flap structure-specific endonuclease 1 581529 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6893 SPATA2 spermatogenesis associated 2 796497 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6894 SLC5A6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 997776 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6895 GLI1 glioma-associated oncogene homolog 1 (zinc finger protein) 1706055 2 2 2 1 0 1 1 0 0 0 0.49 1.00 -6896 ERC2 ELKS/RAB6-interacting/CAST family member 2 1484496 2 2 2 0 1 0 1 0 0 0 0.49 1.00 -6897 GFM2 G elongation factor, mitochondrial 2 1243164 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6898 ZNF862 1624428 2 2 2 1 0 0 1 0 1 0 0.49 1.00 -6899 ZNF434 zinc finger protein 434 745290 1 1 1 1 0 0 1 0 0 0 0.49 1.00 -6900 TRNT1 tRNA nucleotidyl transferase, CCA-adding, 1 675831 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6901 PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 1116414 1 1 1 1 0 0 0 0 1 0 0.49 1.00 -6902 RGS3 regulator of G-protein signaling 3 1956006 2 2 2 1 0 1 0 0 1 0 0.49 1.00 -6903 DMBT1 deleted in malignant brain tumors 1 3024762 4 4 4 0 3 1 0 0 0 0 0.49 1.00 -6904 PTPRH protein tyrosine phosphatase, receptor type, H 1690845 2 2 2 1 0 2 0 0 0 0 0.49 1.00 -6905 SART3 squamous cell carcinoma antigen recognized by T cells 3 1504776 2 2 2 0 1 0 1 0 0 0 0.49 1.00 -6906 NPHS1 nephrosis 1, congenital, Finnish type (nephrin) 1724307 2 2 2 1 1 0 1 0 0 0 0.49 1.00 -6907 ZNF654 zinc finger protein 654 889278 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6908 ZBTB20 zinc finger and BTB domain containing 20 1031745 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6909 CCDC27 coiled-coil domain containing 27 919698 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6910 FOXD4L1 forkhead box D4-like 1 624117 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6911 TMPRSS11A transmembrane protease, serine 11A 662142 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6912 SAFB2 scaffold attachment factor B2 829452 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6913 NEO1 neogenin homolog 1 (chicken) 2214576 3 3 3 0 1 1 1 0 0 0 0.49 1.00 -6914 CEL carboxyl ester lipase (bile salt-stimulated lipase) 781794 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6915 NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 2208492 2 2 2 0 0 1 0 0 1 0 0.49 1.00 -6916 ACSM4 acyl-CoA synthetase medium-chain family member 4 910065 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6917 EPX eosinophil peroxidase 1113372 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6918 TP53BP2 tumor protein p53 binding protein, 2 1747122 2 2 2 0 0 0 1 1 0 0 0.49 1.00 -6919 LRRC6 leucine rich repeat containing 6 734643 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6920 ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 701181 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6921 IFT81 intraflagellar transport 81 homolog (Chlamydomonas) 1066221 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6922 KRT3 keratin 3 812214 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6923 REV1 REV1 homolog (S. cerevisiae) 1948908 1 1 1 2 0 0 0 0 1 0 0.49 1.00 -6924 PNPLA6 patatin-like phospholipase domain containing 6 1172184 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -6925 FLT3 fms-related tyrosine kinase 3 1536717 2 2 2 2 1 0 1 0 0 0 0.49 1.00 -6926 ZNF251 zinc finger protein 251 1030224 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6927 CDC7 cell division cycle 7 homolog (S. cerevisiae) 896883 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6928 MAS1L MAS1 oncogene-like 578487 1 1 1 3 1 0 0 0 0 0 0.49 1.00 -6929 LONRF3 LON peptidase N-terminal domain and ring finger 3 762021 1 1 1 0 0 0 0 1 0 0 0.49 1.00 -6930 LPIN2 lipin 2 1384110 1 1 1 2 0 0 0 0 1 0 0.49 1.00 -6931 TMEM8B 770640 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6932 CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 910572 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6933 KIF7 kinesin family member 7 1150890 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6934 SCPEP1 serine carboxypeptidase 1 674817 1 1 1 0 0 0 0 0 1 0 0.49 1.00 -6935 UBOX5 U-box domain containing 5 832494 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6936 CASC1 cancer susceptibility candidate 1 1223898 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6937 ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 1749150 2 2 2 0 1 1 0 0 0 0 0.49 1.00 -6938 SLC5A3 solute carrier family 5 (inositol transporters), member 3 1095627 1 1 1 0 0 0 0 1 0 0 0.49 1.00 -6939 TARDBP TAR DNA binding protein 641355 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6940 SIK3 1680198 2 2 2 0 0 0 0 0 2 0 0.49 1.00 -6941 TBCE tubulin folding cofactor E 835029 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6942 CEP78 centrosomal protein 78kDa 908544 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6943 SERPINA12 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 639327 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -6944 RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) 1140750 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6945 ZNF532 zinc finger protein 532 1996566 2 2 2 1 1 0 0 0 1 0 0.49 1.00 -6946 MYH15 myosin, heavy chain 15 3046563 5 4 5 2 2 2 1 0 0 0 0.49 1.00 -6947 WDR6 WD repeat domain 6 1665495 2 2 2 0 0 0 1 0 1 0 0.49 1.00 -6948 DFNB31 deafness, autosomal recessive 31 1174212 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6949 CDK5RAP1 CDK5 regulatory subunit associated protein 1 920712 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6950 SLC9A9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 1015014 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6951 DDI1 DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae) 605865 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6952 THEMIS 988650 1 1 1 0 0 0 0 1 0 0 0.49 1.00 -6953 ADSL adenylosuccinate lyase 684450 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6954 EIF3L 834015 1 1 1 0 0 1 0 0 0 0 0.49 1.00 -6955 C3orf30 chromosome 3 open reading frame 30 822861 1 1 1 1 0 1 0 0 0 0 0.49 1.00 -6956 SCAI 967863 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6957 DDX17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 992199 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6958 GRIK4 glutamate receptor, ionotropic, kainate 4 1259388 1 1 1 1 1 0 0 0 0 0 0.49 1.00 -6959 FAM65B 921726 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6960 ITIH5 inter-alpha (globulin) inhibitor H5 1474356 2 2 2 2 1 1 0 0 0 0 0.49 1.00 -6961 ZNF280C zinc finger protein 280C 1159002 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6962 OXR1 oxidation resistance 1 1203111 1 1 1 0 0 0 0 1 0 0 0.49 1.00 -6963 PAK3 p21 (CDKN1A)-activated kinase 3 916149 1 1 1 0 0 0 0 1 0 0 0.49 1.00 -6964 ANTXR1 anthrax toxin receptor 1 840099 1 1 1 0 1 0 0 0 0 0 0.49 1.00 -6965 ZDBF2 zinc finger, DBF-type containing 2 3588039 4 4 4 1 1 0 1 0 2 0 0.49 1.00 -6966 ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 2297217 3 3 3 2 1 0 2 0 0 0 0.49 1.00 -6967 FNBP1L formin binding protein 1-like 721461 1 1 1 0 0 0 1 0 0 0 0.49 1.00 -6968 HECW2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 2399124 3 3 3 2 0 1 1 1 0 0 0.50 1.00 -6969 MMRN1 multimerin 1 1885533 2 2 2 1 1 0 0 1 0 0 0.50 1.00 -6970 LCT lactase 2966964 3 3 3 0 0 2 0 0 1 0 0.50 1.00 -6971 C9orf156 chromosome 9 open reading frame 156 641862 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -6972 FMR1 fragile X mental retardation 1 969384 1 1 1 2 0 0 1 0 0 0 0.50 1.00 -6973 PTPRR protein tyrosine phosphatase, receptor type, R 1029210 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -6974 SERPINA10 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 684957 1 1 1 1 1 0 0 0 0 0 0.50 1.00 -6975 LRRC27 leucine rich repeat containing 27 765570 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -6976 ZNF165 zinc finger protein 165 745290 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -6977 ANGPTL5 angiopoietin-like 5 607893 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -6978 SUSD4 sushi domain containing 4 763542 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -6979 C3orf59 chromosome 3 open reading frame 59 752388 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -6980 PPL periplakin 2153736 2 2 2 3 0 1 1 0 0 0 0.50 1.00 -6981 LAMB1 laminin, beta 1 2705352 3 3 3 0 1 1 0 0 1 0 0.50 1.00 -6982 PARP3 poly (ADP-ribose) polymerase family, member 3 734643 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -6983 C3 complement component 3 1999101 2 2 2 2 0 1 1 0 0 0 0.50 1.00 -6984 TOPORS topoisomerase I binding, arginine/serine-rich 1496664 2 2 2 1 0 1 1 0 0 0 0.50 1.00 -6985 COL6A6 3383718 4 4 4 1 2 1 1 0 0 0 0.50 1.00 -6986 GFM1 G elongation factor, mitochondrial 1 1137201 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -6987 PAK2 p21 (CDKN1A)-activated kinase 2 734136 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -6988 CCDC91 coiled-coil domain containing 91 696618 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -6989 CLCN1 chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant) 1426191 2 2 2 1 1 1 0 0 0 0 0.50 1.00 -6990 FDPS farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) 587106 1 1 1 2 0 1 0 0 0 0 0.50 1.00 -6991 ELP2 elongation protein 2 homolog (S. cerevisiae) 1302483 1 1 1 1 0 0 1 0 0 0 0.50 1.00 -6992 ZNF583 zinc finger protein 583 875082 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -6993 HNRNPUL1 1182324 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -6994 SPIRE1 spire homolog 1 (Drosophila) 952653 1 1 1 1 0 0 1 0 0 0 0.50 1.00 -6995 STAT2 signal transducer and activator of transcription 2, 113kDa 1342536 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -6996 ZNF615 zinc finger protein 615 1121484 1 1 1 0 0 0 0 0 1 0 0.50 1.00 -6997 UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 817791 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -6998 CPB2 carboxypeptidase B2 (plasma) 667212 1 1 1 1 0 0 1 0 0 0 0.50 1.00 -6999 FAM115C 733629 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -7000 MTMR8 myotubularin related protein 8 1100697 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -7001 ALDH5A1 aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase) 654030 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -7002 SMYD5 SMYD family member 5 663663 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -7003 KLHL25 kelch-like 25 (Drosophila) 881673 1 1 1 1 0 1 0 0 0 0 0.50 1.00 -7004 SULF2 sulfatase 2 904488 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7005 SLC45A4 solute carrier family 45, member 4 965835 1 1 1 1 0 0 0 1 0 0 0.50 1.00 -7006 ADAM10 ADAM metallopeptidase domain 10 1141764 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -7007 TGM1 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) 1213251 1 1 1 1 0 0 1 0 0 0 0.50 1.00 -7008 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa 1029717 1 1 1 1 0 1 0 0 0 0 0.50 1.00 -7009 RHD Rh blood group, D antigen 613470 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -7010 LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) 626652 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7011 CELF2 767091 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -7012 AMBN ameloblastin (enamel matrix protein) 685971 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -7013 TRIM29 tripartite motif-containing 29 913614 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -7014 SMC5 structural maintenance of chromosomes 5 1631019 2 2 2 1 0 0 2 0 0 0 0.50 1.00 -7015 IQSEC3 IQ motif and Sec7 domain 3 873561 1 1 1 2 1 0 0 0 0 0 0.50 1.00 -7016 FANCD2 Fanconi anemia, complementation group D2 2354508 3 3 3 0 1 1 0 0 1 0 0.50 1.00 -7017 TPM3 tropomyosin 3 651495 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -7018 ZNF665 zinc finger protein 665 1038843 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7019 SHCBP1 SHC SH2-domain binding protein 1 995748 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -7020 MON1A MON1 homolog A (yeast) 822861 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -7021 TTLL6 tubulin tyrosine ligase-like family, member 6 906009 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7022 ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) 791934 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7023 ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 1858662 2 2 2 1 0 1 1 0 0 0 0.50 1.00 -7024 SELPLG selectin P ligand 617019 1 1 1 1 1 0 0 0 0 0 0.50 1.00 -7025 NAP1L2 nucleosome assembly protein 1-like 2 703209 1 1 1 2 0 1 0 0 0 0 0.50 1.00 -7026 EXOC3 exocyst complex component 3 732108 1 1 1 2 0 0 0 1 0 0 0.50 1.00 -7027 AFP alpha-fetoprotein 956202 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7028 PRLR prolactin receptor 963807 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7029 CHSY3 chondroitin sulfate synthase 3 1047969 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7030 ZNF568 zinc finger protein 568 991185 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7031 PELI1 pellino homolog 1 (Drosophila) 649467 1 1 1 0 0 1 0 0 0 0 0.50 1.00 -7032 MECP2 methyl CpG binding protein 2 (Rett syndrome) 746811 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -7033 ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 1859676 2 2 2 0 1 0 0 0 1 0 0.50 1.00 -7034 PXK PX domain containing serine/threonine kinase 863421 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -7035 NOP58 836550 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -7036 RFC1 replication factor C (activator 1) 1, 145kDa 1793259 2 2 2 4 0 1 1 0 0 0 0.50 1.00 -7037 ASB6 ankyrin repeat and SOCS box-containing 6 603330 1 1 1 0 1 0 0 0 0 0 0.50 1.00 -7038 SRP68 signal recognition particle 68kDa 974961 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -7039 CCDC60 coiled-coil domain containing 60 866463 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -7040 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 864942 1 1 1 0 0 0 0 1 0 0 0.50 1.00 -7041 USP47 ubiquitin specific peptidase 47 1992003 2 2 2 0 0 2 0 0 0 0 0.50 1.00 -7042 CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2 816777 1 1 1 0 0 0 1 0 0 0 0.50 1.00 -7043 BEND7 753402 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7044 VEZT vezatin, adherens junctions transmembrane protein 1157988 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7045 BAAT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) 643383 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7046 ZNF831 zinc finger protein 831 2056392 1 1 1 2 0 0 0 0 1 0 0.51 1.00 -7047 NUP155 nucleoporin 155kDa 2188212 2 2 2 0 0 1 0 0 1 0 0.51 1.00 -7048 INTS12 integrator complex subunit 12 716391 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7049 ERG v-ets erythroblastosis virus E26 oncogene homolog (avian) 666198 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -7050 SCARB2 scavenger receptor class B, member 2 691548 1 1 1 0 0 0 0 1 0 0 0.51 1.00 -7051 GUSB glucuronidase, beta 887250 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7052 USP2 ubiquitin specific peptidase 2 899418 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7053 PRKG1 protein kinase, cGMP-dependent, type I 983073 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7054 SYCP2L synaptonemal complex protein 2-like 1295385 1 1 1 1 0 0 0 0 1 0 0.51 1.00 -7055 SELE selectin E (endothelial adhesion molecule 1) 953667 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7056 ELF2 E74-like factor 2 (ets domain transcription factor) 946062 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7057 RRP12 ribosomal RNA processing 12 homolog (S. cerevisiae) 1821144 2 2 2 0 0 1 1 0 0 0 0.51 1.00 -7058 TCEB3B transcription elongation factor B polypeptide 3B (elongin A2) 1121484 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7059 GTPBP4 GTP binding protein 4 973947 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -7060 TMCC3 transmembrane and coiled-coil domain family 3 693576 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7061 RIOK2 RIO kinase 2 (yeast) 875589 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7062 TIMELESS timeless homolog (Drosophila) 1895673 2 2 2 1 1 1 0 0 0 0 0.51 1.00 -7063 NOTCH2 Notch homolog 2 (Drosophila) 3789825 4 4 4 2 1 1 1 0 1 0 0.51 1.00 -7064 CCNT1 cyclin T1 1124019 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7065 SMAD4 SMAD family member 4 863421 1 1 1 0 0 0 0 0 1 0 0.51 1.00 -7066 OXCT1 3-oxoacid CoA transferase 1 782808 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7067 CLK1 CDC-like kinase 1 762021 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7068 KIAA1524 KIAA1524 1407432 1 1 1 1 0 0 0 0 1 0 0.51 1.00 -7069 GFAP glial fibrillary acidic protein 629187 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7070 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 1006395 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7071 SLAIN2 SLAIN motif family, member 2 699660 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7072 TRIM9 tripartite motif-containing 9 813228 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -7073 RAI2 retinoic acid induced 2 809679 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7074 PTPRO protein tyrosine phosphatase, receptor type, O 1871337 2 2 2 0 0 0 1 1 0 0 0.51 1.00 -7075 WIPF2 WAS/WASL interacting protein family, member 2 684957 2 1 2 1 0 1 0 1 0 0 0.51 1.00 -7076 ZNF543 zinc finger protein 543 911079 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7077 CCBL2 cysteine conjugate-beta lyase 2 718419 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7078 CSNK2A1 casein kinase 2, alpha 1 polypeptide 620568 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7079 REL v-rel reticuloendotheliosis viral oncogene homolog (avian) 958230 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -7080 RNF220 890799 1 1 1 0 0 0 0 0 1 0 0.51 1.00 -7081 TBX20 T-box 20 630201 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7082 GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 611442 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7083 CES1 carboxylesterase 1 (monocyte/macrophage serine esterase 1) 759486 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7084 NOP56 878124 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7085 BTN3A3 butyrophilin, subfamily 3, member A3 908037 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -7086 ZNF484 zinc finger protein 484 1305525 2 1 2 1 0 0 0 2 0 0 0.51 1.00 -7087 BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 1129089 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7088 FAM111B family with sequence similarity 111, member B 1121991 1 1 1 1 0 0 0 0 1 0 0.51 1.00 -7089 GALNT5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) 1451541 2 2 2 0 2 0 0 0 0 0 0.51 1.00 -7090 CHN1 chimerin (chimaerin) 1 703716 1 1 1 1 0 0 1 0 0 0 0.51 1.00 -7091 TADA3 676845 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7092 POLR1B polymerase (RNA) I polypeptide B, 128kDa 1739517 2 2 2 2 1 0 0 0 1 0 0.51 1.00 -7093 NDRG3 NDRG family member 3 602316 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7094 ZNF423 zinc finger protein 423 1636596 2 2 2 2 1 0 1 0 0 0 0.51 1.00 -7095 ALAS2 aminolevulinate, delta-, synthase 2 932880 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -7096 MLLT6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 1049997 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7097 ZNF570 zinc finger protein 570 824889 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -7098 UBR1 ubiquitin protein ligase E3 component n-recognin 1 2757066 3 3 3 0 0 2 0 1 0 0 0.51 1.00 -7099 SLC6A14 solute carrier family 6 (amino acid transporter), member 14 980031 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7100 DDX53 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 963300 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7101 KIF2C kinesin family member 2C 1146834 1 1 1 1 0 1 0 0 0 0 0.51 1.00 -7102 ABCB7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 1095120 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7103 SLC30A4 solute carrier family 30 (zinc transporter), member 4 668226 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7104 ATG9A ATG9 autophagy related 9 homolog A (S. cerevisiae) 1223898 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7105 PTPRA protein tyrosine phosphatase, receptor type, A 1263951 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7106 SCN11A sodium channel, voltage-gated, type XI, alpha subunit 2778360 3 3 3 0 0 2 0 1 0 0 0.51 1.00 -7107 RTN3 reticulon 3 1591980 2 2 2 0 1 0 0 0 1 0 0.51 1.00 -7108 LZTS2 leucine zipper, putative tumor suppressor 2 744783 1 1 1 0 0 1 0 0 0 0 0.51 1.00 -7109 SYNGAP1 synaptic Ras GTPase activating protein 1 homolog (rat) 1955499 2 2 2 0 0 1 0 0 1 0 0.51 1.00 -7110 CEP63 centrosomal protein 63kDa 1099176 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7111 MARK2 MAP/microtubule affinity-regulating kinase 2 1131624 1 1 1 0 0 0 0 1 0 0 0.51 1.00 -7112 CPNE2 copine II 699660 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7113 VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) 1021098 1 1 1 2 1 0 0 0 0 0 0.51 1.00 -7114 TUBAL3 tubulin, alpha-like 3 687999 1 1 1 0 1 0 0 0 0 0 0.51 1.00 -7115 PELI2 pellino homolog 2 (Drosophila) 611442 1 1 1 1 1 0 0 0 0 0 0.51 1.00 -7116 EZH1 enhancer of zeste homolog 1 (Drosophila) 1143285 1 1 1 0 0 0 1 0 0 0 0.51 1.00 -7117 CLASP1 cytoplasmic linker associated protein 1 2280486 2 2 2 0 0 1 0 0 1 0 0.51 1.00 -7118 COG3 component of oligomeric golgi complex 3 1214772 1 1 1 0 0 0 0 0 1 0 0.51 1.00 -7119 ACSM3 acyl-CoA synthetase medium-chain family member 3 966342 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7120 GLS glutaminase 857844 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -7121 FANCM Fanconi anemia, complementation group M 3163173 2 2 2 1 0 0 0 0 2 0 0.52 1.00 -7122 PFKFB1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 746304 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -7123 PLCG2 phospholipase C, gamma 2 (phosphatidylinositol-specific) 1864239 2 2 2 1 0 1 1 0 0 0 0.52 1.00 -7124 USP9X ubiquitin specific peptidase 9, X-linked 3999723 4 4 4 1 0 1 1 0 2 0 0.52 1.00 -7125 MAML3 mastermind-like 3 (Drosophila) 1306032 1 1 1 2 0 1 0 0 0 0 0.52 1.00 -7126 TTC26 tetratricopeptide repeat domain 26 880659 1 1 1 0 0 0 0 1 0 0 0.52 1.00 -7127 CGNL1 cingulin-like 1 1921023 2 2 2 1 0 1 0 0 1 0 0.52 1.00 -7128 UNC5B unc-5 homolog B (C. elegans) 1356732 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -7129 SPATA20 spermatogenesis associated 20 925275 1 1 1 0 0 0 0 1 0 0 0.52 1.00 -7130 KCNC2 potassium voltage-gated channel, Shaw-related subfamily, member 2 860379 1 1 1 2 1 0 0 0 0 0 0.52 1.00 -7131 PNPLA1 patatin-like phospholipase domain containing 1 734643 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7132 KIAA0195 KIAA0195 2089347 2 2 2 0 0 1 0 0 1 0 0.52 1.00 -7133 INPP5K 631215 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7134 ERCC4 excision repair cross-complementing rodent repair deficiency, complementation group 4 1310595 1 1 1 1 1 0 0 0 0 0 0.52 1.00 -7135 THOC5 THO complex 5 1078896 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7136 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 733122 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7137 MAPK6 mitogen-activated protein kinase 6 1108302 1 1 1 0 0 0 0 1 0 0 0.52 1.00 -7138 ACAT1 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) 636792 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7139 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 1323777 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -7140 JMJD5 jumonji domain containing 5 664170 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7141 CHRNA6 cholinergic receptor, nicotinic, alpha 6 765063 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7142 NEURL4 2092896 2 2 2 1 0 2 0 0 0 0 0.52 1.00 -7143 HSPA13 728052 1 1 1 1 0 0 1 0 0 0 0.52 1.00 -7144 NSUN5 NOL1/NOP2/Sun domain family, member 5 739713 1 1 1 2 1 0 0 0 0 0 0.52 1.00 -7145 ZIK1 zinc finger protein interacting with K protein 1 homolog (mouse) 731601 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7146 PHIP pleckstrin homology domain interacting protein 2780388 3 3 3 0 1 1 0 0 1 0 0.52 1.00 -7147 KPNA4 karyopherin alpha 4 (importin alpha 3) 791427 1 1 1 1 0 0 1 0 0 0 0.52 1.00 -7148 ABL2 v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) 1823679 2 2 2 1 2 0 0 0 0 0 0.52 1.00 -7149 NFE2L1 nuclear factor (erythroid-derived 2)-like 1 1185873 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -7150 ATP13A5 ATPase type 13A5 1914939 2 2 2 0 1 0 0 1 0 0 0.52 1.00 -7151 ZNF33A zinc finger protein 33A 1243164 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7152 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 726024 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7153 SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 745797 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -7154 NR4A1 nuclear receptor subfamily 4, group A, member 1 858351 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7155 RHOBTB3 Rho-related BTB domain containing 3 937443 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7156 PGM2L1 phosphoglucomutase 2-like 1 917670 1 1 1 1 1 0 0 0 0 0 0.52 1.00 -7157 KRT18 keratin 18 665184 1 1 1 2 0 1 0 0 0 0 0.52 1.00 -7158 RABEP1 rabaptin, RAB GTPase binding effector protein 1 1277640 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7159 GPHN gephyrin 1217814 1 1 1 1 0 0 0 1 0 0 0.52 1.00 -7160 MFN2 mitofusin 2 1177254 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7161 ZNF623 zinc finger protein 623 818805 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -7162 FAM73B family with sequence similarity 73, member B 663663 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7163 LRRTM2 leucine rich repeat transmembrane neuronal 2 790413 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7164 SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 904488 1 1 1 0 0 0 0 1 0 0 0.52 1.00 -7165 ARRB1 arrestin, beta 1 633243 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7166 DOCK2 dedicator of cytokinesis 2 2866578 3 3 3 1 0 2 0 0 1 0 0.52 1.00 -7167 ZC3H10 zinc finger CCCH-type containing 10 663663 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7168 NUP88 nucleoporin 88kDa 1138215 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7169 FAM75A1 family with sequence similarity 75, member A1 1199055 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7170 CLSPN claspin homolog (Xenopus laevis) 2088840 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -7171 SCG3 secretogranin III 737685 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7172 GLT25D2 glycosyltransferase 25 domain containing 2 842634 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -7173 ARRDC3 arrestin domain containing 3 647439 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7174 CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1 812214 1 1 1 0 1 0 0 0 0 0 0.52 1.00 -7175 CKAP5 cytoskeleton associated protein 5 3179397 4 4 4 1 1 1 2 0 0 0 0.52 1.00 -7176 FBXO15 F-box protein 15 678366 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7177 NRG3 neuregulin 3 867477 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7178 CP ceruloplasmin (ferroxidase) 1659918 2 2 2 1 1 0 0 1 0 0 0.52 1.00 -7179 KCTD20 potassium channel tetramerisation domain containing 20 653016 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7180 ZNF445 zinc finger protein 445 1555476 2 2 2 0 0 2 0 0 0 0 0.52 1.00 -7181 IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon 940485 1 1 1 2 1 0 0 0 0 0 0.52 1.00 -7182 STOX2 storkhead box 2 1132638 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -7183 KIAA1407 KIAA1407 1459653 1 1 1 0 0 0 0 0 1 0 0.52 1.00 -7184 ETV6 ets variant gene 6 (TEL oncogene) 705237 1 1 1 1 0 1 0 0 0 0 0.52 1.00 -7185 CLK4 CDC-like kinase 4 757458 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7186 CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 815763 1 1 1 0 0 1 0 0 0 0 0.52 1.00 -7187 KIAA1522 KIAA1522 1366365 1 1 1 0 0 0 1 0 0 0 0.52 1.00 -7188 ALDH18A1 aldehyde dehydrogenase 18 family, member A1 1245192 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7189 ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 772668 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -7190 NCOA7 nuclear receptor coactivator 7 1464723 1 1 1 0 0 0 0 1 0 0 0.53 1.00 -7191 RICTOR 2623218 3 3 3 3 1 2 0 0 0 0 0.53 1.00 -7192 BRDT bromodomain, testis-specific 1478412 2 2 2 0 1 0 1 0 0 0 0.53 1.00 -7193 AHDC1 AT hook, DNA binding motif, containing 1 1499706 1 1 1 1 0 0 0 0 1 0 0.53 1.00 -7194 PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha 1354197 1 1 1 2 0 0 1 0 0 0 0.53 1.00 -7195 NOC3L nucleolar complex associated 3 homolog (S. cerevisiae) 1260909 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7196 SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 743769 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7197 ANKRD52 ankyrin repeat domain 52 1488552 1 1 1 1 0 0 0 0 1 0 0.53 1.00 -7198 CAMK2A calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha 741234 1 1 1 1 0 0 1 0 0 0 0.53 1.00 -7199 ZDHHC5 zinc finger, DHHC-type containing 5 1111344 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7200 ZMAT1 zinc finger, matrin type 1 920712 1 1 1 0 1 0 0 0 0 0 0.53 1.00 -7201 KRT84 keratin 84 754416 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7202 CPN2 carboxypeptidase N, polypeptide 2 831480 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7203 CLEC4F C-type lectin domain family 4, member F 911586 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -7204 BRSK1 BR serine/threonine kinase 1 906009 1 1 1 0 1 0 0 0 0 0 0.53 1.00 -7205 XKRX XK, Kell blood group complex subunit-related, X-linked 690534 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7206 PTCHD2 patched domain containing 2 1812018 2 2 2 1 0 2 0 0 0 0 0.53 1.00 -7207 ZBTB44 zinc finger and BTB domain containing 44 634257 1 1 1 0 1 0 0 0 0 0 0.53 1.00 -7208 TEX2 testis expressed 2 1748643 2 2 2 0 0 0 2 0 0 0 0.53 1.00 -7209 MYLK3 myosin light chain kinase 3 1128075 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7210 STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 1216293 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7211 SIGLEC11 sialic acid binding Ig-like lectin 11 947583 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7212 CACHD1 cache domain containing 1 1903278 2 2 2 0 1 0 1 0 0 0 0.53 1.00 -7213 GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa 681915 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7214 PI4KB phosphatidylinositol 4-kinase, catalytic, beta 1285245 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7215 RERE arginine-glutamic acid dipeptide (RE) repeats 1494129 1 1 1 1 0 0 1 0 0 0 0.53 1.00 -7216 CYP4X1 cytochrome P450, family 4, subfamily X, polypeptide 1 800046 1 1 1 1 0 0 0 1 0 0 0.53 1.00 -7217 NCAN neurocan 1729884 2 2 1 0 2 0 0 0 0 0 0.53 1.00 -7218 JAKMIP2 janus kinase and microtubule interacting protein 2 1274091 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7219 ROCK1 Rho-associated, coiled-coil containing protein kinase 1 2119767 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7220 STK4 serine/threonine kinase 4 744783 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7221 ZMYM2 zinc finger, MYM-type 2 2104050 3 2 3 0 0 1 2 0 0 0 0.53 1.00 -7222 SGK223 1262937 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7223 CDRT1 CMT1A duplicated region transcript 1 1156467 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7224 GNAO1 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O 642369 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -7225 CPB1 carboxypeptidase B1 (tissue) 658086 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7226 ENPEP glutamyl aminopeptidase (aminopeptidase A) 1487031 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7227 NOMO3 NODAL modulator 3 990678 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7228 UMODL1 uromodulin-like 1 1860183 2 2 2 1 0 1 0 0 1 0 0.53 1.00 -7229 PKD1L1 polycystic kidney disease 1 like 1 4169568 5 5 5 2 3 1 1 0 0 0 0.53 1.00 -7230 TRIM41 tripartite motif-containing 41 957216 1 1 1 1 0 0 0 1 0 0 0.53 1.00 -7231 TMPRSS11F transmembrane protease, serine 11F 687999 1 1 1 0 1 0 0 0 0 0 0.53 1.00 -7232 RABEP2 rabaptin, RAB GTPase binding effector protein 2 698646 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7233 GRID2 glutamate receptor, ionotropic, delta 2 1565616 2 2 2 0 1 1 0 0 0 0 0.53 1.00 -7234 C20orf152 chromosome 20 open reading frame 152 867984 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7235 VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 1421628 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7236 FANCG Fanconi anemia, complementation group G 972933 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7237 IL5RA interleukin 5 receptor, alpha 673803 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7238 LARP1B 1482975 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7239 GOLGA3 golgi autoantigen, golgin subfamily a, 3 2162862 2 1 2 0 0 0 0 0 0 2 0.53 1.00 -7240 CSF2RA colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) 677352 1 1 1 2 1 0 0 0 0 0 0.53 1.00 -7241 ASXL1 additional sex combs like 1 (Drosophila) 2324595 3 2 3 0 2 0 0 0 1 0 0.53 1.00 -7242 TBC1D23 TBC1 domain family, member 23 1078389 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7243 SYDE1 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) 675831 1 1 1 0 1 0 0 0 0 0 0.53 1.00 -7244 ZNF7 zinc finger protein 7 1049997 1 1 1 0 0 0 1 0 0 0 0.53 1.00 -7245 SFRS18 splicing factor, arginine/serine-rich 18 1246206 1 1 1 0 0 0 0 1 0 0 0.53 1.00 -7246 GPR133 G protein-coupled receptor 133 1274091 1 1 1 1 0 1 0 0 0 0 0.53 1.00 -7247 APLP1 amyloid beta (A4) precursor-like protein 1 804609 1 1 1 2 0 0 1 0 0 0 0.53 1.00 -7248 ATP13A2 ATPase type 13A2 1471314 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7249 CCDC47 coiled-coil domain containing 47 760500 1 1 1 0 0 0 0 0 1 0 0.53 1.00 -7250 DPYSL5 dihydropyrimidinase-like 5 882180 1 1 1 1 1 0 0 0 0 0 0.53 1.00 -7251 TRIM28 tripartite motif-containing 28 781287 1 1 1 2 0 0 1 0 0 0 0.53 1.00 -7252 ATP10D ATPase, class V, type 10D 2215083 2 2 2 0 0 1 1 0 0 0 0.53 1.00 -7253 KCNAB1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 906009 1 1 1 0 0 1 0 0 0 0 0.53 1.00 -7254 GLI2 GLI-Kruppel family member GLI2 1978821 2 2 2 0 1 0 1 0 0 0 0.53 1.00 -7255 HGSNAT heparan-alpha-glucosaminide N-acetyltransferase 938964 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -7256 ADCY8 adenylate cyclase 8 (brain) 1734954 2 2 2 3 1 1 0 0 0 0 0.54 1.00 -7257 ERMAP erythroblast membrane-associated protein (Scianna blood group) 742248 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7258 CD4 CD4 molecule 716391 1 1 1 1 0 1 0 0 0 0 0.54 1.00 -7259 APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like) 1150383 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7260 DNA2 DNA replication helicase 2 homolog (yeast) 1781598 2 2 2 0 0 2 0 0 0 0 0.54 1.00 -7261 COBLL1 COBL-like 1 1780584 2 2 2 1 0 1 1 0 0 0 0.54 1.00 -7262 GON4L gon-4-like (C. elegans) 3421743 4 4 4 1 1 0 1 1 1 0 0.54 1.00 -7263 FSCB fibrous sheath CABYR binding protein 1200576 1 1 1 2 0 1 0 0 0 0 0.54 1.00 -7264 C5 complement component 5 2612064 3 3 3 0 0 1 2 0 0 0 0.54 1.00 -7265 YES1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 849732 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7266 AKT2 v-akt murine thymoma viral oncogene homolog 2 663156 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7267 MMP27 matrix metallopeptidase 27 802074 1 1 1 1 0 1 0 0 0 0 0.54 1.00 -7268 FBXW2 F-box and WD repeat domain containing 2 704223 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -7269 FARSA phenylalanyl-tRNA synthetase, alpha subunit 723996 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -7270 ZNF573 zinc finger protein 573 865449 1 1 1 0 0 0 0 0 1 0 0.54 1.00 -7271 BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 1176240 1 1 1 1 0 0 1 0 0 0 0.54 1.00 -7272 GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa 1088022 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7273 CAPN13 calpain 13 1001325 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7274 KLHL11 kelch-like 11 (Drosophila) 804102 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -7275 SRL sarcalumenin 700167 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7276 NLRC5 NLR family, CARD domain containing 5 2693184 4 3 4 1 0 1 0 1 2 0 0.54 1.00 -7277 FLI1 Friend leukemia virus integration 1 698139 1 1 1 1 0 0 1 0 0 0 0.54 1.00 -7278 RCBTB1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 805116 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -7279 NAGLU N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB) 760500 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -7280 ADAM22 ADAM metallopeptidase domain 22 1439373 1 1 1 1 0 0 1 0 0 0 0.54 1.00 -7281 CAPN2 calpain 2, (m/II) large subunit 940992 2 1 2 1 1 1 0 0 0 0 0.54 1.00 -7282 ZNF608 zinc finger protein 608 2319525 2 2 2 1 0 0 0 1 1 0 0.54 1.00 -7283 PCYOX1L prenylcysteine oxidase 1 like 718419 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7284 HYAL4 hyaluronoglucosaminidase 4 739206 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -7285 AGAP1 1256853 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7286 AOC2 amine oxidase, copper containing 2 (retina-specific) 1159509 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7287 PRDM10 PR domain containing 10 1826721 2 2 2 0 2 0 0 0 0 0 0.54 1.00 -7288 TECTA tectorin alpha 3206268 3 3 3 2 1 0 1 0 1 0 0.54 1.00 -7289 MTMR7 myotubularin related protein 7 1019577 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -7290 DPY19L4 dpy-19-like 4 (C. elegans) 1129596 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -7291 AXL AXL receptor tyrosine kinase 1340508 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7292 C1orf112 chromosome 1 open reading frame 112 1343550 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7293 SMYD4 SET and MYND domain containing 4 1137708 1 1 1 1 0 0 1 0 0 0 0.54 1.00 -7294 ZFP161 zinc finger protein 161 homolog (mouse) 688506 1 1 1 1 1 0 0 0 0 0 0.54 1.00 -7295 SIDT1 SID1 transmembrane family, member 1 1235052 1 1 1 1 0 0 0 1 0 0 0.54 1.00 -7296 TACC1 transforming, acidic coiled-coil containing protein 1 1168635 1 1 1 2 1 0 0 0 0 0 0.54 1.00 -7297 PLEKHO2 pleckstrin homology domain containing, family O member 2 698646 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7298 SLC22A6 solute carrier family 22 (organic anion transporter), member 6 848211 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7299 FLRT2 fibronectin leucine rich transmembrane protein 2 1007409 1 1 1 2 1 0 0 0 0 0 0.54 1.00 -7300 COL10A1 collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia) 1039857 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7301 ZNF274 zinc finger protein 274 801567 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7302 BCR breakpoint cluster region 1112358 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -7303 NUP98 nucleoporin 98kDa 2840721 3 3 3 0 1 1 0 0 1 0 0.54 1.00 -7304 PNN pinin, desmosome associated protein 1051518 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -7305 NOX3 NADPH oxidase 3 891813 1 1 1 3 0 1 0 0 0 0 0.54 1.00 -7306 PKN2 protein kinase N2 1516437 1 1 1 0 0 0 0 0 1 0 0.54 1.00 -7307 RNF111 ring finger protein 111 1527591 1 1 1 0 0 0 0 0 1 0 0.54 1.00 -7308 SCN10A sodium channel, voltage-gated, type X, alpha subunit 3031353 3 3 3 1 1 1 1 0 0 0 0.54 1.00 -7309 CCDC63 coiled-coil domain containing 63 880152 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7310 ZMIZ2 zinc finger, MIZ-type containing 2 1255332 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7311 NTRK1 neurotrophic tyrosine kinase, receptor, type 1 1018563 1 1 1 0 1 0 0 0 0 0 0.54 1.00 -7312 MELK maternal embryonic leucine zipper kinase 1026168 1 1 1 1 1 0 0 0 0 0 0.54 1.00 -7313 IFIT2 interferon-induced protein with tetratricopeptide repeats 2 723489 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7314 NUMB numb homolog (Drosophila) 1011972 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7315 EDNRB endothelin receptor type B 749346 1 1 1 0 0 0 0 1 0 0 0.54 1.00 -7316 DDX21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 1220349 1 1 1 0 0 1 0 0 0 0 0.54 1.00 -7317 PTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) 1462695 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -7318 ZBTB16 zinc finger and BTB domain containing 16 1036308 1 1 1 0 0 0 1 0 0 0 0.54 1.00 -7319 AGBL5 ATP/GTP binding protein-like 5 1410474 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -7320 RPE65 retinal pigment epithelium-specific protein 65kDa 840606 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -7321 HCRTR2 hypocretin (orexin) receptor 2 691041 1 1 1 1 0 1 0 0 0 0 0.55 1.00 -7322 CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) 766077 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7323 ACBD5 acyl-Coenzyme A binding domain containing 5 808158 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -7324 UBAP1 ubiquitin associated protein 1 757965 1 1 1 1 1 0 0 0 0 0 0.55 1.00 -7325 IL21R interleukin 21 receptor 835536 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7326 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 759993 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7327 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 855816 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7328 ROR2 receptor tyrosine kinase-like orphan receptor 2 1241136 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7329 PRSS12 protease, serine, 12 (neurotrypsin, motopsin) 1102218 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7330 SLC35F5 solute carrier family 35, member F5 805116 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7331 DTX4 deltex 4 homolog (Drosophila) 839085 1 1 1 1 1 0 0 0 0 0 0.55 1.00 -7332 TAF5L TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa 908544 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7333 CDK5RAP2 CDK5 regulatory subunit associated protein 2 2925897 3 3 3 2 1 1 1 0 0 0 0.55 1.00 -7334 POU2F1 POU class 2 homeobox 1 1137708 1 1 1 1 0 0 1 0 0 0 0.55 1.00 -7335 ILF3 interleukin enhancer binding factor 3, 90kDa 1398306 1 1 1 1 0 0 0 1 0 0 0.55 1.00 -7336 MAP3K6 mitogen-activated protein kinase kinase kinase 6 1463709 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -7337 ANKRD20A4 ankyrin repeat domain 20 family, member A4 1037322 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7338 ZNF600 zinc finger protein 600 1101711 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7339 SRRM4 872547 1 1 1 3 1 0 0 0 0 0 0.55 1.00 -7340 LRRC8A leucine rich repeat containing 8 family, member A 1236066 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7341 CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7 776217 1 1 1 0 0 0 0 1 0 0 0.55 1.00 -7342 FUBP1 far upstream element (FUSE) binding protein 1 1021605 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7343 SESTD1 SEC14 and spectrin domains 1 1094613 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7344 TLR3 toll-like receptor 3 1384617 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7345 ZFYVE1 zinc finger, FYVE domain containing 1 1205646 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -7346 DCLK2 doublecortin-like kinase 2 723489 1 1 1 1 0 0 1 0 0 0 0.55 1.00 -7347 CTCFL CCCTC-binding factor (zinc finger protein)-like 993213 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7348 RP1L1 retinitis pigmentosa 1-like 1 3038451 4 3 4 1 1 1 2 0 0 0 0.55 1.00 -7349 SCEL sciellin 1112865 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7350 ASTN2 astrotactin 2 1789203 2 2 2 0 2 0 0 0 0 0 0.55 1.00 -7351 BLNK B-cell linker 729573 1 1 1 1 0 1 0 0 0 0 0.55 1.00 -7352 RAB3GAP1 RAB3 GTPase activating protein subunit 1 (catalytic) 1542294 1 1 1 0 0 0 0 0 1 0 0.55 1.00 -7353 RNF10 ring finger protein 10 1187901 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7354 MLH3 mutL homolog 3 (E. coli) 2235870 2 2 2 0 0 0 1 0 1 0 0.55 1.00 -7355 VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae) 1359267 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7356 KLHL6 kelch-like 6 (Drosophila) 960258 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7357 MS4A14 membrane-spanning 4-domains, subfamily A, member 14 1043406 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7358 MARCH7 membrane-associated ring finger (C3HC4) 7 1090557 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7359 SSH1 slingshot homolog 1 (Drosophila) 1559025 1 1 1 2 0 0 0 0 1 0 0.55 1.00 -7360 PCDHGC3 protocadherin gamma subfamily C, 3 1445457 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7361 ERF Ets2 repressor factor 701181 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7362 PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 965835 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7363 STRADA 710814 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7364 IL1RAPL2 interleukin 1 receptor accessory protein-like 2 1065207 1 1 1 1 0 1 0 0 0 0 0.55 1.00 -7365 COL4A6 collagen, type IV, alpha 6 2667834 3 3 3 0 1 0 2 0 0 0 0.55 1.00 -7366 KDM4C 1709604 2 2 2 2 2 0 0 0 0 0 0.55 1.00 -7367 CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 840099 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7368 ITGB8 integrin, beta 8 1188408 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7369 PLOD1 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 980031 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7370 EYA1 eyes absent homolog 1 (Drosophila) 949104 1 1 1 1 0 0 0 0 1 0 0.55 1.00 -7371 KCNA10 potassium voltage-gated channel, shaker-related subfamily, member 10 780780 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7372 MMP10 matrix metallopeptidase 10 (stromelysin 2) 745797 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7373 CHRNG cholinergic receptor, nicotinic, gamma 792441 1 1 1 0 0 1 0 0 0 0 0.55 1.00 -7374 SPAG6 sperm associated antigen 6 732615 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7375 THRB thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) 718926 1 1 1 0 1 0 0 0 0 0 0.55 1.00 -7376 DZIP1L DAZ interacting protein 1-like 1139736 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7377 KYNU kynureninase (L-kynurenine hydrolase) 748332 1 1 1 0 0 0 1 0 0 0 0.55 1.00 -7378 SNX13 sorting nexin 13 1439880 1 1 1 1 0 0 1 0 0 0 0.55 1.00 -7379 REC8 REC8 homolog (yeast) 867477 1 1 1 1 0 0 1 0 0 0 0.55 1.00 -7380 SCRIB scribbled homolog (Drosophila) 885729 1 1 1 1 1 0 0 0 0 0 0.55 1.00 -7381 GLG1 golgi apparatus protein 1 1706055 2 2 2 0 0 1 1 0 0 0 0.55 1.00 -7382 MERTK c-mer proto-oncogene tyrosine kinase 1526577 1 1 1 1 0 0 0 0 1 0 0.55 1.00 -7383 SKIL SKI-like oncogene 1054053 1 1 1 1 0 0 1 0 0 0 0.55 1.00 -7384 USP53 ubiquitin specific peptidase 53 1663974 2 2 2 0 0 0 2 0 0 0 0.55 1.00 -7385 PAH phenylalanine hydroxylase 715377 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7386 DPP6 dipeptidyl-peptidase 6 1028196 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7387 CES7 carboxylesterase 7 896883 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -7388 PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 3557619 4 4 4 1 3 0 1 0 0 0 0.56 1.00 -7389 PNLIPRP3 pancreatic lipase-related protein 3 736164 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7390 TCP11L2 t-complex 11 (mouse)-like 2 809172 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7391 NRF1 nuclear respiratory factor 1 786864 1 1 1 1 0 1 0 0 0 0 0.56 1.00 -7392 DARS aspartyl-tRNA synthetase 794469 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7393 SENP5 SUMO1/sentrin specific peptidase 5 1168128 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7394 RC3H2 ring finger and CCCH-type zinc finger domains 2 1893138 2 2 2 1 0 0 1 0 1 0 0.56 1.00 -7395 PNLDC1 poly(A)-specific ribonuclease (PARN)-like domain containing 1 798018 1 1 1 1 0 0 0 1 0 0 0.56 1.00 -7396 RAI14 retinoic acid induced 14 1526577 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7397 SLC24A2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 1027182 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7398 IQGAP3 IQ motif containing GTPase activating protein 3 2559336 3 3 3 3 2 0 1 0 0 0 0.56 1.00 -7399 ZNF83 zinc finger protein 83 788385 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7400 RANBP17 RAN binding protein 17 1701999 2 2 2 1 1 1 0 0 0 0 0.56 1.00 -7401 CTNNAL1 catenin (cadherin-associated protein), alpha-like 1 1082952 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7402 LRRC31 leucine rich repeat containing 31 859365 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7403 LRRC50 leucine rich repeat containing 50 1063686 1 1 1 3 0 1 0 0 0 0 0.56 1.00 -7404 GANC glucosidase, alpha; neutral C 1440387 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7405 PCDHB8 protocadherin beta 8 1202604 1 1 1 1 1 0 0 0 0 0 0.56 1.00 -7406 MSH4 mutS homolog 4 (E. coli) 1435317 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -7407 ANKRD17 ankyrin repeat domain 17 3924180 4 4 4 0 1 1 1 0 1 0 0.56 1.00 -7408 PPP1R10 protein phosphatase 1, regulatory (inhibitor) subunit 10 1407939 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7409 TNPO2 transportin 2 (importin 3, karyopherin beta 2b) 1189929 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -7410 GPNMB glycoprotein (transmembrane) nmb 893841 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7411 PDE1B phosphodiesterase 1B, calmodulin-dependent 845169 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7412 ITIH3 inter-alpha (globulin) inhibitor H3 1369914 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7413 CCT8 chaperonin containing TCP1, subunit 8 (theta) 865449 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7414 TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 2885337 3 3 3 1 1 0 1 1 0 0 0.56 1.00 -7415 AKAP1 A kinase (PRKA) anchor protein 1 1395264 1 1 1 1 0 0 1 0 0 0 0.56 1.00 -7416 RIF1 RAP1 interacting factor homolog (yeast) 3832413 4 4 4 0 0 3 1 0 0 0 0.56 1.00 -7417 ZAP70 zeta-chain (TCR) associated protein kinase 70kDa 723489 1 1 1 1 1 0 0 0 0 0 0.56 1.00 -7418 ZNF107 zinc finger protein 107 1196520 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7419 PAPPA2 pappalysin 2 2797119 3 3 3 1 0 2 0 1 0 0 0.56 1.00 -7420 EPRS glutamyl-prolyl-tRNA synthetase 2366169 2 2 2 0 0 1 0 0 1 0 0.56 1.00 -7421 INTS3 integrator complex subunit 3 1647243 2 2 2 1 1 1 0 0 0 0 0.56 1.00 -7422 PCDHB16 protocadherin beta 16 1097655 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7423 SPAG17 sperm associated antigen 17 3480048 4 4 4 0 0 2 2 0 0 0 0.56 1.00 -7424 FAM194A 1038336 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7425 IQGAP2 IQ motif containing GTPase activating protein 2 2444754 2 2 2 1 0 0 0 0 2 0 0.56 1.00 -7426 LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 1038843 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7427 CUL1 cullin 1 1224405 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7428 VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) 1243164 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7429 KIF11 kinesin family member 11 1611246 2 2 2 0 1 1 0 0 0 0 0.56 1.00 -7430 KIF3C kinesin family member 3C 1223898 1 1 1 3 1 0 0 0 0 0 0.56 1.00 -7431 VWA3B von Willebrand factor A domain containing 3B 1991496 2 2 2 0 0 2 0 0 0 0 0.56 1.00 -7432 TMC7 transmembrane channel-like 7 1097655 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7433 ARHGAP21 Rho GTPase activating protein 21 3030339 3 3 3 0 2 1 0 0 0 0 0.56 1.00 -7434 CLMN calmin (calponin-like, transmembrane) 1508325 1 1 1 1 0 0 1 0 0 0 0.56 1.00 -7435 SBF2 SET binding factor 2 2865057 3 3 3 0 1 1 1 0 0 0 0.56 1.00 -7436 GPR156 G protein-coupled receptor 156 1257867 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7437 MARK3 MAP/microtubule affinity-regulating kinase 3 1167621 1 1 1 0 0 0 0 1 0 0 0.56 1.00 -7438 NGLY1 N-glycanase 1 952146 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7439 RGS14 regulator of G-protein signaling 14 761514 1 1 1 2 0 0 1 0 0 0 0.56 1.00 -7440 MAG myelin associated glycoprotein 768612 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7441 ZHX2 zinc fingers and homeoboxes 2 1276626 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7442 ALDH1A2 aldehyde dehydrogenase 1 family, member A2 754416 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7443 DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 1698957 2 2 2 0 0 2 0 0 0 0 0.56 1.00 -7444 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 1403376 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7445 CD22 CD22 molecule 1316172 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7446 C6orf10 chromosome 6 open reading frame 10 904488 1 1 1 2 0 0 0 1 0 0 0.56 1.00 -7447 SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 1588938 1 1 1 1 0 0 0 0 1 0 0.56 1.00 -7448 FAM71A family with sequence similarity 71, member A 907023 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7449 C6orf222 chromosome 6 open reading frame 222 1015521 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7450 TCP11 t-complex 11 homolog (mouse) 818805 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7451 CALCOCO1 calcium binding and coiled-coil domain 1 1080924 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -7452 CABYR calcium binding tyrosine-(Y)-phosphorylation regulated 1065207 1 1 1 0 0 0 0 0 1 0 0.56 1.00 -7453 TTC23 tetratricopeptide repeat domain 23 701688 1 1 1 0 1 0 0 0 0 0 0.56 1.00 -7454 GTF3C3 general transcription factor IIIC, polypeptide 3, 102kDa 1385631 1 1 1 0 0 1 0 0 0 0 0.56 1.00 -7455 PNPLA8 patatin-like phospholipase domain containing 8 1209195 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7456 LRRC8B leucine rich repeat containing 8 family, member B 1226940 1 1 1 0 0 0 1 0 0 0 0.56 1.00 -7457 ADC arginine decarboxylase 719433 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -7458 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 920205 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7459 RAP1GDS1 RAP1, GTP-GDP dissociation stimulator 1 952653 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7460 DNAH11 dynein, axonemal, heavy chain 11 6870357 8 8 8 2 2 0 3 2 1 0 0.57 1.00 -7461 C8orf41 chromosome 8 open reading frame 41 781794 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7462 COL28A1 collagen, type XXVIII, alpha 1 1781598 2 2 2 0 0 2 0 0 0 0 0.57 1.00 -7463 KRT85 keratin 85 789906 1 1 1 1 1 0 0 0 0 0 0.57 1.00 -7464 BTD biotinidase 822354 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7465 ADNP activity-dependent neuroprotector homeobox 1683747 3 2 3 1 1 0 2 0 0 0 0.57 1.00 -7466 ADCY7 adenylate cyclase 7 1257867 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7467 PLTP phospholipid transfer protein 757965 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7468 SLC39A12 solute carrier family 39 (zinc transporter), member 12 1018563 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -7469 PKN3 protein kinase N3 1134159 2 1 2 0 0 1 0 0 1 0 0.57 1.00 -7470 USP38 ubiquitin specific peptidase 38 1518465 1 1 1 0 0 0 0 1 0 0 0.57 1.00 -7471 SF1 splicing factor 1 803088 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7472 ZNF439 zinc finger protein 439 766584 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7473 P2RX7 purinergic receptor P2X, ligand-gated ion channel, 7 892320 1 1 1 2 0 1 0 0 0 0 0.57 1.00 -7474 PHKB phosphorylase kinase, beta 1755741 2 2 2 0 1 0 0 1 0 0 0.57 1.00 -7475 IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 843648 1 1 1 1 1 0 0 0 0 0 0.57 1.00 -7476 MORC4 MORC family CW-type zinc finger 4 1368393 1 1 1 1 1 0 0 0 0 0 0.57 1.00 -7477 APBA1 amyloid beta (A4) precursor protein-binding, family A, member 1 (X11) 840606 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7478 MYOF 3199170 3 3 3 2 0 1 0 0 2 0 0.57 1.00 -7479 CIC capicua homolog (Drosophila) 2214069 2 2 2 1 0 1 1 0 0 0 0.57 1.00 -7480 KIAA1958 KIAA1958 1096641 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7481 WDR44 WD repeat domain 44 1425684 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7482 PM20D1 peptidase M20 domain containing 1 790413 1 1 1 1 0 1 0 0 0 0 0.57 1.00 -7483 IRAK1 interleukin-1 receptor-associated kinase 1 768612 1 1 1 1 0 0 1 0 0 0 0.57 1.00 -7484 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 1637610 2 2 2 1 0 1 1 0 0 0 0.57 1.00 -7485 ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 1345578 1 1 1 1 0 1 0 0 0 0 0.57 1.00 -7486 PDE11A phosphodiesterase 11A 1545336 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7487 ADAM15 ADAM metallopeptidase domain 15 1229475 1 1 1 1 0 0 0 0 1 0 0.57 1.00 -7488 ZNF441 zinc finger protein 441 959244 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7489 ZNF30 zinc finger protein 30 958737 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7490 MTMR3 myotubularin related protein 3 1853592 2 2 2 0 0 1 1 0 0 0 0.57 1.00 -7491 PTH2R parathyroid hormone 2 receptor 856830 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -7492 DNER delta/notch-like EGF repeat containing 978510 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7493 LRRC8C leucine rich repeat containing 8 family, member C 1226940 1 1 1 0 0 0 0 1 0 0 0.57 1.00 -7494 ZNF35 zinc finger protein 35 809172 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7495 ARPP21 1279668 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7496 DVL3 dishevelled, dsh homolog 3 (Drosophila) 1073319 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7497 PCSK7 proprotein convertase subtilisin/kexin type 7 1211223 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -7498 OSBP oxysterol binding protein 1071798 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7499 KIAA1549 2672397 3 3 3 0 2 0 0 1 0 0 0.57 1.00 -7500 PEAR1 platelet endothelial aggregation receptor 1 1432275 1 1 1 2 0 0 1 0 0 0 0.57 1.00 -7501 ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 2433093 2 2 2 0 0 1 0 0 1 0 0.57 1.00 -7502 PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 1062165 1 1 1 2 0 1 0 0 0 0 0.57 1.00 -7503 FCHO2 FCH domain only 2 1034280 1 1 1 0 0 1 0 0 0 0 0.57 1.00 -7504 SLC6A17 solute carrier family 6, member 17 1129596 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -7505 SYDE2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) 1577277 1 1 1 0 0 0 1 0 0 0 0.57 1.00 -7506 KPNB1 karyopherin (importin) beta 1 1324284 1 1 1 0 0 0 0 1 0 0 0.57 1.00 -7507 SGIP1 SH3-domain GRB2-like (endophilin) interacting protein 1 1311609 1 1 1 0 1 0 0 0 0 0 0.57 1.00 -7508 XIRP1 xin actin-binding repeat containing 1 2804724 3 3 3 0 1 1 1 0 0 0 0.57 1.00 -7509 BTN2A2 butyrophilin, subfamily 2, member A2 811200 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7510 RTTN rotatin 3468894 3 3 3 2 0 0 0 1 2 0 0.58 1.00 -7511 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 1417065 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7512 NPEPPS aminopeptidase puromycin sensitive 1003860 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -7513 TBC1D1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 1589445 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -7514 ALCAM activated leukocyte cell adhesion molecule 918684 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -7515 PAMR1 1062165 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7516 PUM1 pumilio homolog 1 (Drosophila) 1818609 2 2 2 1 0 1 0 0 1 0 0.58 1.00 -7517 EFTUD1 elongation factor Tu GTP binding domain containing 1 1743573 2 2 2 0 1 1 0 0 0 0 0.58 1.00 -7518 MBOAT2 membrane bound O-acyltransferase domain containing 2 778752 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -7519 MED13 mediator complex subunit 13 3333525 4 4 4 0 2 1 1 0 0 0 0.58 1.00 -7520 SNRNP200 3312231 3 3 3 2 0 2 1 0 0 0 0.58 1.00 -7521 SLC3A1 solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1 1063686 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7522 PLK1 polo-like kinase 1 (Drosophila) 857337 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -7523 UGT2B28 UDP glucuronosyltransferase 2 family, polypeptide B28 818298 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -7524 NPHP4 nephronophthisis 4 1530633 1 1 1 3 0 1 0 0 0 0 0.58 1.00 -7525 RNF214 ring finger protein 214 1099176 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7526 CATSPER1 cation channel, sperm associated 1 1107795 1 1 1 0 0 0 0 1 0 0 0.58 1.00 -7527 CD3EAP CD3e molecule, epsilon associated protein 769626 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7528 TBC1D8 TBC1 domain family, member 8 (with GRAM domain) 1632540 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -7529 ITPR3 inositol 1,4,5-triphosphate receptor, type 3 3947502 4 4 4 1 0 2 1 0 1 0 0.58 1.00 -7530 SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1004367 1 1 1 1 0 1 0 0 0 0 0.58 1.00 -7531 PCDHGA2 protocadherin gamma subfamily A, 2 1451541 1 1 1 2 0 0 1 0 0 0 0.58 1.00 -7532 IFT88 intraflagellar transport 88 homolog (Chlamydomonas) 1308060 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7533 CDC27 cell division cycle 27 homolog (S. cerevisiae) 1293864 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7534 PTPRF protein tyrosine phosphatase, receptor type, F 2554773 3 3 3 0 2 1 0 0 0 0 0.58 1.00 -7535 CPS1 carbamoyl-phosphate synthetase 1, mitochondrial 2371239 2 2 2 0 0 1 1 0 0 0 0.58 1.00 -7536 MBTPS2 membrane-bound transcription factor peptidase, site 2 773175 1 1 1 1 0 0 1 0 0 0 0.58 1.00 -7537 WRN Werner syndrome 2247531 2 2 2 1 0 1 0 0 1 0 0.58 1.00 -7538 AK5 adenylate kinase 5 852267 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7539 LEMD3 LEM domain containing 3 1061658 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -7540 FRMD3 FERM domain containing 3 891306 1 1 1 0 0 0 1 0 0 0 0.58 1.00 -7541 ATP2C1 ATPase, Ca++ transporting, type 2C, member 1 1504776 1 1 1 1 0 0 0 0 1 0 0.58 1.00 -7542 ACCN2 amiloride-sensitive cation channel 2, neuronal 874575 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7543 RBL1 retinoblastoma-like 1 (p107) 1594008 1 1 1 2 0 0 0 1 0 0 0.58 1.00 -7544 OGG1 8-oxoguanine DNA glycosylase 873054 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7545 ZNF295 zinc finger protein 295 1624935 1 1 1 1 0 0 0 0 1 0 0.58 1.00 -7546 SRPK1 SFRS protein kinase 1 995241 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7547 SIN3A SIN3 homolog A, transcription regulator (yeast) 1978314 2 2 2 0 0 0 1 1 0 0 0.58 1.00 -7548 TRMT6 tRNA methyltransferase 6 homolog (S. cerevisiae) 778245 1 1 1 1 1 0 0 0 0 0 0.58 1.00 -7549 CPT2 carnitine palmitoyltransferase II 932880 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7550 NBPF3 neuroblastoma breakpoint family, member 3 964314 1 1 1 1 0 0 1 0 0 0 0.58 1.00 -7551 PLEKHA5 pleckstrin homology domain containing, family A member 5 1659918 2 2 2 1 0 0 2 0 0 0 0.58 1.00 -7552 PCDHAC2 protocadherin alpha subfamily C, 2 1310088 1 1 1 4 0 1 0 0 0 0 0.58 1.00 -7553 MAVS 833508 1 1 1 1 1 0 0 0 0 0 0.58 1.00 -7554 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 1386645 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -7555 SF3B2 splicing factor 3b, subunit 2, 145kDa 1398306 1 1 1 1 0 0 0 0 1 0 0.58 1.00 -7556 WDR93 WD repeat domain 93 1077375 1 1 1 1 1 0 0 0 0 0 0.58 1.00 -7557 IPP intracisternal A particle-promoted polypeptide 906009 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7558 ZNF646 zinc finger protein 646 2755545 3 3 3 0 0 2 1 0 0 0 0.58 1.00 -7559 GPR56 G protein-coupled receptor 56 1061151 1 1 1 1 0 0 1 0 0 0 0.58 1.00 -7560 FBXO43 F-box protein 43 1088529 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7561 TULP4 tubby like protein 4 2169453 2 2 2 1 1 0 0 0 1 0 0.58 1.00 -7562 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 1576263 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -7563 WDR75 WD repeat domain 75 1260909 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7564 DEPDC1B DEP domain containing 1B 802074 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7565 EFCAB7 EF-hand calcium binding domain 7 984594 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -7566 ALPL alkaline phosphatase, liver/bone/kidney 774189 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7567 XPO1 exportin 1 (CRM1 homolog, yeast) 1679184 2 2 2 1 1 1 0 0 0 0 0.58 1.00 -7568 MET met proto-oncogene (hepatocyte growth factor receptor) 2183649 4 2 4 0 0 1 0 0 0 3 0.58 1.00 -7569 HIPK4 homeodomain interacting protein kinase 4 894348 1 1 1 0 0 1 0 0 0 0 0.58 1.00 -7570 EYA4 eyes absent homolog 4 (Drosophila) 1065207 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7571 ZNF45 zinc finger protein 45 1046955 1 1 1 1 0 0 0 0 1 0 0.58 1.00 -7572 ZFP112 1398306 1 1 1 1 0 0 0 1 0 0 0.58 1.00 -7573 CLCN2 chloride channel 2 1132638 1 1 1 0 1 0 0 0 0 0 0.58 1.00 -7574 CPSF3 cleavage and polyadenylation specific factor 3, 73kDa 1051011 1 1 1 0 0 0 0 0 1 0 0.58 1.00 -7575 RB1CC1 RB1-inducible coiled-coil 1 2470611 2 2 2 0 1 0 0 0 1 0 0.59 1.00 -7576 TMTC2 transmembrane and tetratricopeptide repeat containing 2 1253304 1 1 1 2 0 0 1 0 0 0 0.59 1.00 -7577 BTBD7 BTB (POZ) domain containing 7 1781598 2 2 2 0 0 1 1 0 0 0 0.59 1.00 -7578 DISP1 dispatched homolog 1 (Drosophila) 2333721 2 2 2 1 1 0 0 0 1 0 0.59 1.00 -7579 LRRTM1 leucine rich repeat transmembrane neuronal 1 795990 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -7580 TMTC3 transmembrane and tetratricopeptide repeat containing 3 1418079 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -7581 USHBP1 Usher syndrome 1C binding protein 1 1024647 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -7582 CPNE9 copine family member IX 822861 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -7583 OSBPL10 oxysterol binding protein-like 10 1043406 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -7584 C17orf47 chromosome 17 open reading frame 47 872547 1 1 1 1 0 1 0 0 0 0 0.59 1.00 -7585 ZNF235 zinc finger protein 235 1132131 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -7586 ZNF304 zinc finger protein 304 991185 1 1 1 0 0 0 0 1 0 0 0.59 1.00 -7587 ARSE arylsulfatase E (chondrodysplasia punctata 1) 917670 1 1 1 0 0 0 0 1 0 0 0.59 1.00 -7588 C11orf30 chromosome 11 open reading frame 30 2052843 2 2 2 1 0 0 2 0 0 0 0.59 1.00 -7589 NOL11 nucleolar protein 11 1131624 2 1 2 0 1 0 1 0 0 0 0.59 1.00 -7590 DIXDC1 DIX domain containing 1 993213 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -7591 METT11D1 methyltransferase 11 domain containing 1 758472 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -7592 ELMO1 engulfment and cell motility 1 1149876 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -7593 HLCS holocarboxylase synthetase (biotin-(proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)) ligase) 1108302 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -7594 EIF4B eukaryotic translation initiation factor 4B 961272 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -7595 RALGAPB 2332707 2 2 2 0 1 0 0 0 1 0 0.59 1.00 -7596 FBN3 fibrillin 3 3353298 3 3 3 3 1 0 1 1 0 0 0.59 1.00 -7597 JHDM1D jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) 1372956 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -7598 GRHL3 grainyhead-like 3 (Drosophila) 867477 1 1 1 0 0 0 0 1 0 0 0.59 1.00 -7599 ALPK2 alpha-kinase 2 3318822 3 3 3 1 1 0 2 0 0 0 0.59 1.00 -7600 VAV1 vav 1 guanine nucleotide exchange factor 1180803 1 1 1 0 0 1 0 0 0 0 0.59 1.00 -7601 TBXAS1 thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A) 840099 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -7602 ITGAD integrin, alpha D 1676649 1 1 1 1 0 0 0 0 1 0 0.59 1.00 -7603 LGSN 783822 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -7604 HEATR5A HEAT repeat containing 5A 2667834 3 3 3 0 1 1 1 0 0 0 0.59 1.00 -7605 MYO15A myosin XVA 3298035 3 3 3 2 1 1 1 0 0 0 0.59 1.00 -7606 KIAA1279 KIAA1279 934401 1 1 1 1 0 0 1 0 0 0 0.59 1.00 -7607 GRM1 glutamate receptor, metabotropic 1 1866774 2 2 2 1 2 0 0 0 0 0 0.59 1.00 -7608 PPIP5K2 1918995 2 2 2 0 1 0 1 0 0 0 0.59 1.00 -7609 BCHE butyrylcholinesterase 923247 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -7610 LY9 lymphocyte antigen 9 1081938 1 1 1 0 0 0 1 0 0 0 0.59 1.00 -7611 INCENP inner centromere protein antigens 135/155kDa 1126554 1 1 1 2 0 1 0 0 0 0 0.59 1.00 -7612 AP1G2 adaptor-related protein complex 1, gamma 2 subunit 1237587 1 1 1 0 1 0 0 0 0 0 0.59 1.00 -7613 LRP4 low density lipoprotein receptor-related protein 4 2909166 3 3 3 2 1 0 1 1 0 0 0.59 1.00 -7614 KIAA0090 KIAA0090 1508325 1 1 1 0 0 0 0 0 1 0 0.59 1.00 -7615 INSR insulin receptor 1952457 2 2 2 1 0 1 0 1 0 0 0.59 1.00 -7616 GRM2 glutamate receptor, metabotropic 2 996255 1 1 1 0 0 0 0 1 0 0 0.59 1.00 -7617 ATP1A2 ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide 1599078 1 1 1 0 0 0 0 1 0 0 0.59 1.00 -7618 LIG4 ligase IV, DNA, ATP-dependent 1388673 2 1 2 0 0 1 0 0 1 0 0.59 1.00 -7619 SLCO1C1 solute carrier organic anion transporter family, member 1C1 1163565 1 1 1 1 0 0 0 1 0 0 0.59 1.00 -7620 LTK leukocyte receptor tyrosine kinase 859872 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -7621 BAT2L1 2992821 3 3 3 1 1 2 0 0 0 0 0.60 1.00 -7622 DCBLD1 discoidin, CUB and LCCL domain containing 1 792948 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7623 PLA2R1 phospholipase A2 receptor 1, 180kDa 2234349 2 2 2 0 0 0 2 0 0 0 0.60 1.00 -7624 MYEF2 myelin expression factor 2 864942 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7625 IFNAR2 interferon (alpha, beta and omega) receptor 2 882180 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -7626 LOXL4 lysyl oxidase-like 4 1060137 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -7627 PGM3 phosphoglucomutase 3 850239 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7628 NALCN sodium leak channel, non-selective 2732223 3 3 3 1 1 0 2 0 0 0 0.60 1.00 -7629 ZNF211 zinc finger protein 211 839592 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7630 SORCS3 sortilin-related VPS10 domain containing receptor 3 1595022 1 1 1 1 0 0 0 1 0 0 0.60 1.00 -7631 STAB1 stabilin 1 2424981 2 2 2 4 1 0 0 1 0 0 0.60 1.00 -7632 GCLC glutamate-cysteine ligase, catalytic subunit 961779 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7633 TRIP12 thyroid hormone receptor interactor 12 3112473 3 3 3 1 0 2 0 0 1 0 0.60 1.00 -7634 SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 788385 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -7635 POLN polymerase (DNA directed) nu 1353183 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7636 TBC1D9 TBC1 domain family, member 9 (with GRAM domain) 1693380 1 1 1 1 0 0 0 0 1 0 0.60 1.00 -7637 DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 1612767 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7638 MACC1 1305525 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7639 CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 825396 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7640 TRPM8 transient receptor potential cation channel, subfamily M, member 8 1729377 2 2 2 0 1 1 0 0 0 0 0.60 1.00 -7641 STARD8 StAR-related lipid transfer (START) domain containing 8 1419093 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7642 KIAA0562 KIAA0562 1351662 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -7643 ITGAM integrin, alpha M (complement component 3 receptor 3 subunit) 1701999 1 1 1 0 0 0 0 0 1 0 0.60 1.00 -7644 WDR78 WD repeat domain 78 1354704 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -7645 GOLGB1 golgin B1, golgi integral membrane protein 5001048 5 5 5 1 2 1 0 0 2 0 0.60 1.00 -7646 ESYT3 1183845 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7647 ALG13 asparagine-linked glycosylation 13 homolog (S. cerevisiae) 1752699 2 2 2 0 1 0 0 1 0 0 0.60 1.00 -7648 NOMO2 NODAL modulator 2 1011972 1 1 1 0 0 0 0 1 0 0 0.60 1.00 -7649 NKTR natural killer-tumor recognition sequence 2226237 2 2 2 0 0 1 1 0 0 0 0.60 1.00 -7650 DOLK dolichol kinase 821847 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -7651 TUBGCP5 tubulin, gamma complex associated protein 5 1492608 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -7652 ZNF418 zinc finger protein 418 1035801 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7653 NFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 1719237 3 2 3 0 1 0 2 0 0 0 0.60 1.00 -7654 ATP6V0A2 ATPase, H+ transporting, lysosomal V0 subunit a2 1282710 1 1 1 1 0 0 0 1 0 0 0.60 1.00 -7655 MAN1A2 mannosidase, alpha, class 1A, member 2 1002846 1 1 1 1 0 0 0 0 1 0 0.60 1.00 -7656 FHOD3 formin homology 2 domain containing 3 2104050 2 2 2 0 0 0 2 0 0 0 0.60 1.00 -7657 HECTD3 HECT domain containing 3 1161537 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7658 FLT1 fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) 2111148 2 2 2 1 0 0 0 2 0 0 0.60 1.00 -7659 MAML1 mastermind-like 1 (Drosophila) 1337973 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7660 ZNF567 zinc finger protein 567 944541 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -7661 MPP4 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 938457 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -7662 ZNF263 zinc finger protein 263 919191 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7663 PAPOLA poly(A) polymerase alpha 1173198 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7664 PCNXL3 pecanex-like 3 (Drosophila) 1368393 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7665 C14orf43 chromosome 14 open reading frame 43 1550406 1 1 1 0 0 0 0 0 1 0 0.60 1.00 -7666 PRKCG protein kinase C, gamma 893841 1 1 1 2 0 0 1 0 0 0 0.60 1.00 -7667 KIAA0408 KIAA0408 1067235 1 1 1 1 0 0 0 0 1 0 0.60 1.00 -7668 DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 1363323 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7669 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 1353690 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7670 FAM161B 1003860 1 1 1 1 0 0 1 0 0 0 0.60 1.00 -7671 PTH1R 784836 1 1 1 0 1 0 0 0 0 0 0.60 1.00 -7672 SUN1 1026675 1 1 1 0 0 0 0 1 0 0 0.60 1.00 -7673 TRIM32 tripartite motif-containing 32 996762 1 1 1 0 0 0 0 0 1 0 0.60 1.00 -7674 PABPC3 poly(A) binding protein, cytoplasmic 3 963300 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7675 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 3988062 4 4 4 1 2 0 1 1 0 0 0.60 1.00 -7676 SOX30 SRY (sex determining region Y)-box 30 944541 1 1 1 1 1 0 0 0 0 0 0.60 1.00 -7677 PCDHGB1 protocadherin gamma subfamily B, 1 1418079 1 1 1 2 0 1 0 0 0 0 0.60 1.00 -7678 KCNA4 potassium voltage-gated channel, shaker-related subfamily, member 4 996762 1 1 1 0 0 0 1 0 0 0 0.60 1.00 -7679 TNS3 tensin 3 2223195 2 2 2 1 2 0 0 0 0 0 0.60 1.00 -7680 LRIG1 leucine-rich repeats and immunoglobulin-like domains 1 1589952 1 1 1 2 0 0 1 0 0 0 0.60 1.00 -7681 ORC3L origin recognition complex, subunit 3-like (yeast) 1125033 1 1 1 0 0 1 0 0 0 0 0.60 1.00 -7682 ACSL4 acyl-CoA synthetase long-chain family member 4 1111344 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -7683 GPR126 G protein-coupled receptor 126 1941303 2 2 2 0 1 1 0 0 0 0 0.61 1.00 -7684 AKNA AT-hook transcription factor 1959048 2 2 2 0 1 0 1 0 0 0 0.61 1.00 -7685 SCN5A sodium channel, voltage-gated, type V, alpha subunit 2971020 3 3 3 3 1 0 1 1 0 0 0.61 1.00 -7686 TOX thymocyte selection-associated high mobility group box 790413 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -7687 ZBTB3 zinc finger and BTB domain containing 3 878631 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7688 GYS2 glycogen synthase 2 (liver) 1103232 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7689 MYBPC3 myosin binding protein C, cardiac 1208688 1 1 1 0 0 0 0 0 1 0 0.61 1.00 -7690 KIF14 kinesin family member 14 2566941 2 2 2 0 1 0 0 0 1 0 0.61 1.00 -7691 SLC27A2 solute carrier family 27 (fatty acid transporter), member 2 868491 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -7692 WDR48 WD repeat domain 48 1061151 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -7693 SETD3 SET domain containing 3 952653 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7694 BIN2 bridging integrator 2 887250 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -7695 CEP152 centrosomal protein 152kDa 2567955 2 2 2 0 0 0 0 2 0 0 0.61 1.00 -7696 CDH20 cadherin 20, type 2 1019577 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7697 DST dystonin 10388937 13 11 13 2 2 3 2 1 3 2 0.61 1.00 -7698 DCP1A DCP1 decapping enzyme homolog A (S. cerevisiae) 879645 1 1 1 2 0 1 0 0 0 0 0.61 1.00 -7699 ADAD1 adenosine deaminase domain containing 1 (testis-specific) 899925 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -7700 ZNF462 zinc finger protein 462 3837483 4 4 4 2 1 1 2 0 0 0 0.61 1.00 -7701 ASTE1 asteroid homolog 1 (Drosophila) 1042392 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -7702 KIF21B kinesin family member 21B 2450838 2 2 2 3 1 0 0 1 0 0 0.61 1.00 -7703 RNF40 ring finger protein 40 1382589 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -7704 UBAP2L ubiquitin associated protein 2-like 1707576 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -7705 AKNAD1 1303497 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -7706 C2 complement component 2 1220856 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -7707 MOCOS molybdenum cofactor sulfurase 1308567 1 1 1 1 0 0 0 0 1 0 0.61 1.00 -7708 STRA6 stimulated by retinoic acid gene 6 homolog (mouse) 938457 1 1 1 2 0 1 0 0 0 0 0.61 1.00 -7709 PHC1 polyhomeotic homolog 1 (Drosophila) 1403883 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -7710 NLGN1 neuroligin 1 1263444 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7711 SACS spastic ataxia of Charlevoix-Saguenay (sacsin) 6905847 6 6 6 1 1 2 2 0 1 0 0.61 1.00 -7712 NARS asparaginyl-tRNA synthetase 856323 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7713 POMT2 protein-O-mannosyltransferase 2 938964 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -7714 ACSM1 acyl-CoA synthetase medium-chain family member 1 905502 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -7715 MYO18A myosin XVIIIA 2586207 2 2 2 0 0 1 1 0 0 0 0.61 1.00 -7716 PDE3B phosphodiesterase 3B, cGMP-inhibited 1324284 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -7717 INPP5F inositol polyphosphate-5-phosphatase F 1712139 1 1 1 0 0 0 0 0 1 0 0.61 1.00 -7718 ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3 1794273 2 2 2 2 1 1 0 0 0 0 0.61 1.00 -7719 TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 1017549 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7720 LRFN2 leucine rich repeat and fibronectin type III domain containing 2 1089543 1 1 1 0 1 0 0 0 0 0 0.61 1.00 -7721 PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 1241643 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7722 TAS1R1 taste receptor, type 1, member 1 1193985 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -7723 MAGEE1 melanoma antigen family E, 1 1248234 1 1 1 0 0 0 1 0 0 0 0.61 1.00 -7724 DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 1584882 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7725 THBS4 thrombospondin 4 1401855 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7726 KIF1C kinesin family member 1C 1476891 1 1 1 1 0 1 0 0 0 0 0.61 1.00 -7727 PRKD1 protein kinase D1 1289301 1 1 1 0 0 0 0 1 0 0 0.61 1.00 -7728 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1672086 1 1 1 0 0 0 0 1 0 0 0.61 1.00 -7729 DPYD dihydropyrimidine dehydrogenase 1607190 1 1 1 0 0 0 0 1 0 0 0.61 1.00 -7730 BRWD3 bromodomain and WD repeat domain containing 3 2758587 3 3 3 0 1 1 0 1 0 0 0.61 1.00 -7731 FLRT3 fibronectin leucine rich transmembrane protein 3 990678 1 1 1 0 0 0 0 0 1 0 0.61 1.00 -7732 KRT6A keratin 6A 877617 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7733 AP3B1 adaptor-related protein complex 3, beta 1 subunit 1720251 1 1 1 2 0 0 0 1 0 0 0.61 1.00 -7734 SIPA1L2 signal-induced proliferation-associated 1 like 2 2612571 2 2 2 3 1 0 1 0 0 0 0.61 1.00 -7735 FBXO10 F-box protein 10 1421628 1 1 1 1 0 0 1 0 0 0 0.61 1.00 -7736 CNOT1 CCR4-NOT transcription complex, subunit 1 3487653 3 3 3 4 0 0 2 0 1 0 0.61 1.00 -7737 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 1441908 1 1 1 0 0 0 0 0 1 0 0.61 1.00 -7738 EXOC5 exocyst complex component 5 964821 1 1 1 1 0 0 0 1 0 0 0.61 1.00 -7739 FOXP2 forkhead box P2 1171677 1 1 1 0 0 1 0 0 0 0 0.61 1.00 -7740 WDR66 WD repeat domain 66 1791738 2 2 2 1 0 2 0 0 0 0 0.62 1.00 -7741 RNF169 ring finger protein 169 834015 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7742 TRIOBP TRIO and F-actin binding protein 2240433 2 2 2 2 1 1 0 0 0 0 0.62 1.00 -7743 SLC7A14 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 1188408 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -7744 GLB1 galactosidase, beta 1 1047462 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7745 PALMD palmdelphin 855816 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -7746 TTK TTK protein kinase 1347606 1 1 1 0 0 0 0 1 0 0 0.62 1.00 -7747 FAM13C 919698 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -7748 SEMA4G sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G 1252290 1 1 1 0 0 0 0 1 0 0 0.62 1.00 -7749 ORC2L origin recognition complex, subunit 2-like (yeast) 911586 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -7750 SLC44A1 solute carrier family 44, member 1 981552 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7751 TMEM63C transmembrane protein 63C 1031238 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7752 PPIP5K1 836043 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -7753 SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporters), member 1 1724814 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -7754 UBE2O ubiquitin-conjugating enzyme E2O 1692873 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -7755 AMBRA1 autophagy/beclin-1 regulator 1 1875393 2 2 2 1 1 0 1 0 0 0 0.62 1.00 -7756 HELB helicase (DNA) B 1605162 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -7757 ZC3H6 zinc finger CCCH-type containing 6 1713660 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -7758 PGBD4 piggyBac transposable element derived 4 887757 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -7759 LMTK2 lemur tyrosine kinase 2 2244489 2 2 2 1 0 1 1 0 0 0 0.62 1.00 -7760 XPO4 exportin 4 1712646 1 1 1 1 0 0 0 0 1 0 0.62 1.00 -7761 UBE3A ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome) 1366872 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7762 UVRAG UV radiation resistance associated gene 1000818 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7763 SEC24A SEC24 related gene family, member A (S. cerevisiae) 1705041 1 1 1 2 0 0 0 0 1 0 0.62 1.00 -7764 NBEA neurobeachin 4268940 4 4 4 1 1 1 0 0 2 0 0.62 1.00 -7765 BBS7 Bardet-Biedl syndrome 7 1130103 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -7766 C17orf66 chromosome 17 open reading frame 66 898911 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7767 FAM59A family with sequence similarity 59, member A 1263951 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -7768 CTAGE5 CTAGE family, member 5 1254825 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7769 AGPS alkylglycerone phosphate synthase 909051 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7770 CRY1 cryptochrome 1 (photolyase-like) 835029 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -7771 ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 906009 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -7772 IQUB IQ motif and ubiquitin domain containing 1228968 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7773 PLCL1 phospholipase C-like 1 1555476 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -7774 PIK3AP1 phosphoinositide-3-kinase adaptor protein 1 1251783 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -7775 C11orf41 chromosome 11 open reading frame 41 2829060 3 3 3 1 2 0 0 1 0 0 0.62 1.00 -7776 PIGG phosphatidylinositol glycan anchor biosynthesis, class G 1427712 1 1 1 0 0 0 0 1 0 0 0.62 1.00 -7777 VPS33A vacuolar protein sorting 33 homolog A (S. cerevisiae) 917670 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7778 TGM4 transglutaminase 4 (prostate) 1070277 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7779 LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 1234038 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7780 SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 1431768 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -7781 THRAP3 thyroid hormone receptor associated protein 3 1474356 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7782 KCNH8 potassium voltage-gated channel, subfamily H (eag-related), member 8 1717716 1 1 1 0 0 0 0 0 1 0 0.62 1.00 -7783 ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 926289 1 1 1 1 0 1 0 0 0 0 0.62 1.00 -7784 SLC9A2 solute carrier family 9 (sodium/hydrogen exchanger), member 2 1152411 1 1 1 2 0 0 1 0 0 0 0.62 1.00 -7785 RRN3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) 981045 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7786 PTK2 PTK2 protein tyrosine kinase 2 1674621 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7787 DNAJC10 DnaJ (Hsp40) homolog, subfamily C, member 10 1252290 1 1 1 0 0 1 0 0 0 0 0.62 1.00 -7788 IFIH1 interferon induced with helicase C domain 1 1592994 1 1 1 0 0 0 0 1 0 0 0.62 1.00 -7789 MYO1B myosin IB 1790217 2 2 2 0 1 1 0 0 0 0 0.62 1.00 -7790 SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 1593501 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7791 GRIA2 glutamate receptor, ionotropic, AMPA 2 1435317 1 1 1 1 1 0 0 0 0 0 0.62 1.00 -7792 FBXW7 F-box and WD repeat domain containing 7 1310088 1 1 1 0 0 0 1 0 0 0 0.62 1.00 -7793 PKP2 plakophilin 2 1254825 1 1 1 0 1 0 0 0 0 0 0.62 1.00 -7794 CCDC52 coiled-coil domain containing 52 1336452 1 1 1 0 0 0 0 1 0 0 0.62 1.00 -7795 KRIT1 KRIT1, ankyrin repeat containing 1153425 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -7796 TBC1D14 TBC1 domain family, member 14 1081938 1 1 1 1 0 0 1 0 0 0 0.63 1.00 -7797 PRSS36 protease, serine, 36 951639 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -7798 DDHD2 DDHD domain containing 2 1140243 1 1 1 0 0 0 0 1 0 0 0.63 1.00 -7799 SCAPER S phase cyclin A-associated protein in the ER 2076672 2 2 2 0 0 1 1 0 0 0 0.63 1.00 -7800 SAP130 Sin3A-associated protein, 130kDa 1597557 1 1 1 1 0 0 0 0 1 0 0.63 1.00 -7801 NCBP1 nuclear cap binding protein subunit 1, 80kDa 1230489 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -7802 TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) 1143285 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -7803 WDR60 WD repeat domain 60 1488045 1 1 1 3 0 0 1 0 0 0 0.63 1.00 -7804 CSMD3 CUB and Sushi multiple domains 3 5815290 6 6 6 2 0 3 2 0 1 0 0.63 1.00 -7805 RDX radixin 914628 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -7806 NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 1355718 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -7807 TLE4 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 1193478 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -7808 SIPA1L3 signal-induced proliferation-associated 1 like 3 2331693 2 2 2 1 1 1 0 0 0 0 0.63 1.00 -7809 ZNF333 zinc finger protein 333 1035294 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -7810 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 1352169 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -7811 ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 1188408 1 1 1 4 0 1 0 0 0 0 0.63 1.00 -7812 FILIP1 filamin A interacting protein 1 1856634 2 2 2 1 0 0 2 0 0 0 0.63 1.00 -7813 DISP2 dispatched homolog 2 (Drosophila) 1857141 2 2 2 3 1 0 0 0 1 0 0.63 1.00 -7814 ASNSD1 asparagine synthetase domain containing 1 985608 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -7815 NTRK2 neurotrophic tyrosine kinase, receptor, type 2 1350141 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -7816 NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 969384 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -7817 SP110 SP110 nuclear body protein 1155453 2 1 2 0 1 1 0 0 0 0 0.63 1.00 -7818 RBL2 retinoblastoma-like 2 (p130) 1649778 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -7819 KIF5A kinesin family member 5A 1627977 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -7820 GPATCH1 G patch domain containing 1 1419093 1 1 1 2 0 0 1 0 0 0 0.63 1.00 -7821 RSBN1 round spermatid basic protein 1 1097655 1 1 1 2 0 0 1 0 0 0 0.63 1.00 -7822 PTPRM protein tyrosine phosphatase, receptor type, M 2160327 2 2 2 1 0 1 0 0 1 0 0.63 1.00 -7823 MCPH1 microcephalin 1 1290822 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -7824 IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein 2100501 3 2 3 0 0 2 1 0 0 0 0.63 1.00 -7825 PARP1 poly (ADP-ribose) polymerase family, member 1 1527591 1 1 1 1 0 0 0 1 0 0 0.63 1.00 -7826 ANO10 1017549 1 1 1 0 0 0 0 1 0 0 0.63 1.00 -7827 GOLGA4 golgi autoantigen, golgin subfamily a, 4 3422250 4 3 4 0 0 1 1 0 0 2 0.63 1.00 -7828 CHL1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 1915953 2 2 2 1 2 0 0 0 0 0 0.63 1.00 -7829 RSPH4A 1102725 1 1 1 0 0 0 0 0 1 0 0.63 1.00 -7830 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1012479 1 1 1 1 0 1 0 0 0 0 0.63 1.00 -7831 DDX42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 1462695 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -7832 GAB2 GRB2-associated binding protein 2 1009944 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -7833 SAMHD1 SAM domain and HD domain 1 986115 1 1 1 0 0 0 1 0 0 0 0.63 1.00 -7834 DDX26B DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 1318200 1 1 1 1 0 0 1 0 0 0 0.63 1.00 -7835 EML2 echinoderm microtubule associated protein like 2 1004874 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -7836 SPINK5 serine peptidase inhibitor, Kazal type 5 1740531 1 1 1 2 0 1 0 0 0 0 0.63 1.00 -7837 POLQ polymerase (DNA directed), theta 3955614 4 4 4 0 0 3 0 0 1 0 0.63 1.00 -7838 RABGAP1L RAB GTPase activating protein 1-like 1340001 1 1 1 0 0 0 0 1 0 0 0.63 1.00 -7839 NYNRIN 2861001 3 3 3 2 1 1 1 0 0 0 0.63 1.00 -7840 USP35 ubiquitin specific peptidase 35 1217307 1 1 1 0 0 1 0 0 0 0 0.63 1.00 -7841 DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 897897 1 1 1 0 1 0 0 0 0 0 0.63 1.00 -7842 SALL2 sal-like 2 (Drosophila) 1537224 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -7843 ZNF224 zinc finger protein 224 1084980 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -7844 SLIT2 slit homolog 2 (Drosophila) 2244996 2 2 2 1 1 0 0 0 1 0 0.64 1.00 -7845 SMG5 Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) 1542801 1 1 1 0 0 0 0 1 0 0 0.64 1.00 -7846 TNRC6C trinucleotide repeat containing 6C 2175537 2 2 2 1 0 2 0 0 0 0 0.64 1.00 -7847 KIAA0754 1996566 2 2 2 0 0 0 0 2 0 0 0.64 1.00 -7848 TRPA1 transient receptor potential cation channel, subfamily A, member 1 1758276 1 1 1 0 0 0 0 0 1 0 0.64 1.00 -7849 ATMIN ATM interactor 1089036 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -7850 CDC23 cell division cycle 23 homolog (S. cerevisiae) 942006 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -7851 ACTN3 actinin, alpha 3 1050504 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -7852 CACNA1B calcium channel, voltage-dependent, N type, alpha 1B subunit 2647047 1 1 1 0 0 0 0 0 1 0 0.64 1.00 -7853 ALDH1L1 aldehyde dehydrogenase 1 family, member L1 1259388 1 1 1 2 0 0 1 0 0 0 0.64 1.00 -7854 PRKCH protein kinase C, eta 977496 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -7855 HYDIN hydrocephalus inducing homolog (mouse) 7967505 8 8 8 2 4 0 2 1 1 0 0.64 1.00 -7856 TEC tec protein tyrosine kinase 995748 1 1 1 1 0 0 0 1 0 0 0.64 1.00 -7857 SETD5 SET domain containing 5 2191254 2 2 2 0 1 0 0 1 0 0 0.64 1.00 -7858 HEATR4 HEAT repeat containing 4 1523028 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -7859 FBXO34 F-box protein 34 1084980 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -7860 FASTKD2 FAST kinase domains 2 1103739 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -7861 EPHB2 EPH receptor B2 1481454 1 1 1 1 1 0 0 0 0 0 0.64 1.00 -7862 OS9 1005381 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -7863 DCLK3 doublecortin-like kinase 3 995241 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -7864 SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 1178268 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -7865 C13orf23 chromosome 13 open reading frame 23 1463709 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -7866 ZNF616 zinc finger protein 616 1195506 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -7867 DNAH7 dynein, axonemal, heavy chain 7 6244212 8 7 8 0 0 1 6 1 0 0 0.64 1.00 -7868 GEMIN4 gem (nuclear organelle) associated protein 4 1116414 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -7869 DIS3 DIS3 mitotic control homolog (S. cerevisiae) 1383603 1 1 1 1 0 0 1 0 0 0 0.64 1.00 -7870 USP8 ubiquitin specific peptidase 8 1740531 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -7871 IGSF10 immunoglobulin superfamily, member 10 4003272 4 4 4 0 1 1 2 0 0 0 0.64 1.00 -7872 SHROOM3 shroom family member 3 2453880 3 2 3 0 1 2 0 0 0 0 0.64 1.00 -7873 ZNF609 zinc finger protein 609 2163876 2 2 2 2 0 1 1 0 0 0 0.64 1.00 -7874 FOXJ3 forkhead box J3 971919 1 1 1 0 0 0 1 0 0 0 0.64 1.00 -7875 ANKRD30A ankyrin repeat domain 30A 1938261 2 2 2 1 1 0 1 0 0 0 0.64 1.00 -7876 NEK1 NIMA (never in mitosis gene a)-related kinase 1 1744587 1 1 1 1 0 1 0 0 0 0 0.64 1.00 -7877 PHF14 PHD finger protein 14 1352169 1 1 1 1 0 0 1 0 0 0 0.64 1.00 -7878 PDZRN4 PDZ domain containing RING finger 4 1304004 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -7879 PITPNM2 phosphatidylinositol transfer protein, membrane-associated 2 1434303 1 1 1 0 1 0 0 0 0 0 0.64 1.00 -7880 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 1220349 1 1 1 3 0 0 1 0 0 0 0.64 1.00 -7881 C10orf79 chromosome 10 open reading frame 79 2576067 2 2 2 0 0 1 0 0 1 0 0.64 1.00 -7882 SEL1L2 sel-1 suppressor of lin-12-like 2 (C. elegans) 1088529 1 1 1 0 0 1 0 0 0 0 0.64 1.00 -7883 SENP7 SUMO1/sentrin specific peptidase 7 1647243 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7884 PEX1 peroxisome biogenesis factor 1 1934205 2 2 2 0 0 2 0 0 0 0 0.65 1.00 -7885 HDAC9 histone deacetylase 9 1695408 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -7886 IQSEC2 IQ motif and Sec7 domain 2 1375998 1 1 1 2 0 0 0 1 0 0 0.65 1.00 -7887 CCDC129 coiled-coil domain containing 129 1571700 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7888 FAM135B family with sequence similarity 135, member B 2178579 2 2 2 1 1 0 0 0 1 0 0.65 1.00 -7889 CD101 1572714 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7890 MYOM1 myomesin 1, 185kDa 2467569 2 2 2 0 0 1 1 0 0 0 0.65 1.00 -7891 LNX1 ligand of numb-protein X 1 1108302 1 1 1 1 0 1 0 0 0 0 0.65 1.00 -7892 CD2AP CD2-associated protein 1005888 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7893 BMP1 bone morphogenetic protein 1 1365351 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7894 KIF18A kinesin family member 18A 1399827 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7895 ENTHD1 ENTH domain containing 1 936936 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -7896 JAK1 Janus kinase 1 (a protein tyrosine kinase) 1804920 1 1 1 0 0 0 0 1 0 0 0.65 1.00 -7897 HAUS6 1488552 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7898 CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 942513 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7899 RPAP1 RNA polymerase II associated protein 1 2022930 2 2 2 1 0 1 0 0 1 0 0.65 1.00 -7900 USP25 ubiquitin specific peptidase 25 1630005 1 1 1 0 0 0 0 1 0 0 0.65 1.00 -7901 HCN1 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 1089543 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -7902 ZNF99 zinc finger protein 99 1593501 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7903 PYGL phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI) 1250262 1 1 1 0 0 0 0 1 0 0 0.65 1.00 -7904 CHD5 chromodomain helicase DNA binding protein 5 2154243 2 2 2 2 1 1 0 0 0 0 0.65 1.00 -7905 EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 1537731 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -7906 MCM3 minichromosome maintenance complex component 3 1223391 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7907 LRGUK leucine-rich repeats and guanylate kinase domain containing 1296906 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7908 AP1G1 adaptor-related protein complex 1, gamma 1 subunit 1297413 1 1 1 1 1 0 0 0 0 0 0.65 1.00 -7909 C8orf80 chromosome 8 open reading frame 80 1022619 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7910 PKD2L2 polycystic kidney disease 2-like 2 944541 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7911 KCNMA1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 1677156 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7912 TF transferrin 1073826 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7913 SLC28A2 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 1036815 1 1 1 0 0 0 0 0 1 0 0.65 1.00 -7914 UBN1 ubinuclein 1 1753206 1 1 1 2 0 1 0 0 0 0 0.65 1.00 -7915 PPP2R5D protein phosphatase 2, regulatory subunit B', delta isoform 940992 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -7916 METTL13 1044927 1 1 1 1 0 0 0 0 1 0 0.65 1.00 -7917 ZP2 zona pellucida glycoprotein 2 (sperm receptor) 1173198 1 1 1 1 0 0 0 1 0 0 0.65 1.00 -7918 KIAA0319L KIAA0319-like 1637610 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7919 KLHL5 kelch-like 5 (Drosophila) 1172184 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -7920 CROT carnitine O-octanoyltransferase 964821 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -7921 DTL denticleless homolog (Drosophila) 1142271 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7922 EPHB3 EPH receptor B3 1486524 1 1 1 1 0 0 1 0 0 0 0.65 1.00 -7923 HDAC6 histone deacetylase 6 1905306 2 2 2 2 0 1 1 0 0 0 0.65 1.00 -7924 RPA1 replication protein A1, 70kDa 895362 1 1 1 0 0 1 0 0 0 0 0.65 1.00 -7925 SLC5A12 solute carrier family 5 (sodium/glucose cotransporter), member 12 971919 1 1 1 1 0 1 0 0 0 0 0.65 1.00 -7926 INTS5 integrator complex subunit 5 1512888 2 1 2 0 0 1 1 0 0 0 0.65 1.00 -7927 NCOA5 nuclear receptor coactivator 5 896376 1 1 1 1 1 0 0 0 0 0 0.65 1.00 -7928 KIAA0467 KIAA0467 3850665 3 3 3 2 0 0 1 0 2 0 0.65 1.00 -7929 CLCN4 chloride channel 4 1179282 1 1 1 1 0 0 0 1 0 0 0.65 1.00 -7930 UNC13B unc-13 homolog B (C. elegans) 2487342 2 2 2 2 1 1 0 0 0 0 0.65 1.00 -7931 PLEKHG4 pleckstrin homology domain containing, family G (with RhoGef domain) member 4 1726335 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7932 ZNF431 zinc finger protein 431 887757 1 1 1 0 1 0 0 0 0 0 0.65 1.00 -7933 ATF6 activating transcription factor 6 1053039 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7934 INPPL1 inositol polyphosphate phosphatase-like 1 1686282 1 1 1 2 0 0 0 0 1 0 0.65 1.00 -7935 LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 1143792 1 1 1 0 0 0 1 0 0 0 0.65 1.00 -7936 CNGB3 cyclic nucleotide gated channel beta 3 1268514 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -7937 PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 1339494 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -7938 FNDC3B fibronectin type III domain containing 3B 1883505 1 1 1 0 0 0 0 1 0 0 0.66 1.00 -7939 ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) 1322256 1 1 1 0 0 0 0 1 0 0 0.66 1.00 -7940 BTBD9 BTB (POZ) domain containing 9 956709 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7941 ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 1517958 1 1 1 0 0 0 0 1 0 0 0.66 1.00 -7942 ESRP1 1067742 1 1 1 2 0 0 0 1 0 0 0.66 1.00 -7943 USP45 ubiquitin specific peptidase 45 1274091 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7944 KIAA1109 KIAA1109 7784478 8 8 8 0 2 4 1 1 0 0 0.66 1.00 -7945 SV2B synaptic vesicle glycoprotein 2B 1064700 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7946 EPHB4 EPH receptor B4 1176240 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -7947 CHD7 chromodomain helicase DNA binding protein 7 4537650 4 4 4 1 0 1 2 0 1 0 0.66 1.00 -7948 ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 1226433 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -7949 DENND2C DENN/MADD domain containing 2C 1360788 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -7950 SLC26A3 solute carrier family 26, member 3 1204125 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -7951 ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 2515734 2 2 2 2 0 1 1 0 0 0 0.66 1.00 -7952 HYOU1 hypoxia up-regulated 1 1571700 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -7953 AUTS2 autism susceptibility candidate 2 1553448 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -7954 NES nestin 2060448 3 2 3 2 0 2 1 0 0 0 0.66 1.00 -7955 NPAS2 neuronal PAS domain protein 2 1271049 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7956 WDR35 WD repeat domain 35 1840410 1 1 1 0 0 0 0 0 1 0 0.66 1.00 -7957 PC pyruvate carboxylase 1576770 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -7958 SH3TC2 SH3 domain and tetratricopeptide repeats 2 1979835 2 2 2 0 0 1 0 0 1 0 0.66 1.00 -7959 SULF1 sulfatase 1 1364844 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7960 CCNF cyclin F 1079910 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -7961 CCHCR1 coiled-coil alpha-helical rod protein 1 1362816 1 1 1 0 0 0 0 1 0 0 0.66 1.00 -7962 DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like 2623218 2 2 2 0 0 1 0 1 0 0 0.66 1.00 -7963 TNFAIP3 tumor necrosis factor, alpha-induced protein 3 1219335 1 1 1 3 1 0 0 0 0 0 0.66 1.00 -7964 ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 2506608 3 2 3 1 0 0 0 1 2 0 0.66 1.00 -7965 FAM13B 1471314 1 1 1 0 0 0 0 1 0 0 0.66 1.00 -7966 GALNT3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) 984594 1 1 1 0 0 1 0 0 0 0 0.66 1.00 -7967 CNST 1132131 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7968 CAPN6 calpain 6 1000818 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -7969 NAV1 neuron navigator 1 2579109 2 2 2 0 0 2 0 0 0 0 0.66 1.00 -7970 NLGN4X neuroligin 4, X-linked 1252290 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7971 CALD1 caldesmon 1 1202604 2 1 2 1 0 1 0 1 0 0 0.66 1.00 -7972 GPR98 G protein-coupled receptor 98 9718176 9 9 9 1 3 1 2 1 2 0 0.66 1.00 -7973 MCM10 minichromosome maintenance complex component 10 1370928 1 1 1 1 0 0 1 0 0 0 0.66 1.00 -7974 ADAM30 ADAM metallopeptidase domain 30 1205139 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7975 AKAP6 A kinase (PRKA) anchor protein 6 3553056 3 3 3 1 0 1 2 0 0 0 0.66 1.00 -7976 MEI1 meiosis inhibitor 1 1737489 1 1 1 0 0 0 1 0 0 0 0.66 1.00 -7977 PLCB3 phospholipase C, beta 3 (phosphatidylinositol-specific) 1492101 1 1 1 1 1 0 0 0 0 0 0.66 1.00 -7978 DAGLA diacylglycerol lipase, alpha 1558518 1 1 1 2 0 0 1 0 0 0 0.66 1.00 -7979 ATRNL1 attractin-like 1 2007213 2 2 2 0 1 0 1 0 0 0 0.66 1.00 -7980 SBF1 SET binding factor 1 1940796 1 1 1 0 0 0 0 0 1 0 0.66 1.00 -7981 PARD3B par-3 partitioning defective 3 homolog B (C. elegans) 1760304 1 1 1 0 0 0 0 0 1 0 0.66 1.00 -7982 ZNF780A zinc finger protein 780A 979524 1 1 1 0 1 0 0 0 0 0 0.66 1.00 -7983 CP110 1535196 1 1 1 2 0 0 1 0 0 0 0.66 1.00 -7984 KSR2 kinase suppressor of ras 2 1407939 1 1 1 1 0 1 0 0 0 0 0.66 1.00 -7985 ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 1932684 4 1 4 2 0 0 0 0 0 4 0.67 1.00 -7986 GRM4 glutamate receptor, metabotropic 4 1344057 1 1 1 2 0 1 0 0 0 0 0.67 1.00 -7987 PCDHGA5 protocadherin gamma subfamily A, 5 1424163 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -7988 DHX40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 1048476 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -7989 MYH13 myosin, heavy chain 13, skeletal muscle 2803710 2 2 2 4 1 1 0 0 0 0 0.67 1.00 -7990 BTBD12 BTB (POZ) domain containing 12 2420925 2 2 2 1 0 1 0 1 0 0 0.67 1.00 -7991 EPB41 erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) 1330368 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -7992 UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) 1320228 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -7993 TEX14 testis expressed 14 2334228 2 2 2 1 0 2 0 0 0 0 0.67 1.00 -7994 IFT80 intraflagellar transport 80 homolog (Chlamydomonas) 1221870 1 1 1 2 0 0 1 0 0 0 0.67 1.00 -7995 OVGP1 oviductal glycoprotein 1, 120kDa (mucin 9, oviductin) 1055067 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -7996 BRD7 bromodomain containing 7 1000818 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -7997 PIWIL4 piwi-like 4 (Drosophila) 1313637 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -7998 TET2 tet oncogene family member 2 1775514 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -7999 OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 1558011 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -8000 FAM161A 1017549 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -8001 HHIPL2 HHIP-like 2 1120977 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -8002 KIAA0802 KIAA0802 2251587 2 2 2 1 1 1 0 0 0 0 0.67 1.00 -8003 MANBA mannosidase, beta A, lysosomal 1281189 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -8004 KLKB1 kallikrein B, plasma (Fletcher factor) 1 1000311 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -8005 CDH26 cadherin-like 26 1314651 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -8006 SEC24D SEC24 related gene family, member D (S. cerevisiae) 1615809 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -8007 ZAK 1452048 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -8008 PLEKHG6 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 1049997 1 1 1 1 0 1 0 0 0 0 0.67 1.00 -8009 KCTD19 potassium channel tetramerisation domain containing 19 1434303 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -8010 TOP1 topoisomerase (DNA) I 1174212 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -8011 DIAPH3 diaphanous homolog 3 (Drosophila) 1785654 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -8012 CDH13 cadherin 13, H-cadherin (heart) 1083459 1 1 1 1 0 0 1 0 0 0 0.67 1.00 -8013 PCDHA2 protocadherin alpha 2 1483482 1 1 1 2 1 0 0 0 0 0 0.67 1.00 -8014 SIK2 1365858 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -8015 ZNF142 zinc finger protein 142 2558322 2 2 2 1 0 0 1 0 1 0 0.67 1.00 -8016 PDE10A phosphodiesterase 10A 1230996 1 1 1 1 1 0 0 0 0 0 0.67 1.00 -8017 FBXW10 F-box and WD repeat domain containing 10 1628484 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -8018 DOCK3 dedicator of cytokinesis 3 2885337 2 2 2 0 0 1 0 0 1 0 0.67 1.00 -8019 NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 1522014 1 1 1 0 0 1 0 0 0 0 0.67 1.00 -8020 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 1017042 1 1 1 0 0 0 1 0 0 0 0.67 1.00 -8021 WDR63 WD repeat domain 63 1401348 1 1 1 0 1 0 0 0 0 0 0.67 1.00 -8022 RGNEF 2264262 3 2 3 0 0 0 1 2 0 0 0.67 1.00 -8023 CATSPERB cation channel, sperm-associated, beta 1751685 1 1 1 0 0 0 0 1 0 0 0.67 1.00 -8024 SP1 Sp1 transcription factor 1202097 1 1 1 1 0 0 1 0 0 0 0.67 1.00 -8025 BICD2 bicaudal D homolog 2 (Drosophila) 1041378 1 1 1 1 0 1 0 0 0 0 0.68 1.00 -8026 PAN2 PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae) 1880463 1 1 1 1 0 0 0 0 1 0 0.68 1.00 -8027 FILIP1L filamin A interacting protein 1-like 1748643 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -8028 SBNO1 strawberry notch homolog 1 (Drosophila) 2183142 2 2 2 1 1 0 0 1 0 0 0.68 1.00 -8029 LTBP1 latent transforming growth factor beta binding protein 1 2463513 2 2 2 1 0 0 1 1 0 0 0.68 1.00 -8030 LRRC36 leucine rich repeat containing 36 1153425 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -8031 MTMR6 myotubularin related protein 6 960258 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -8032 A1CF APOBEC1 complementation factor 991692 1 1 1 1 1 0 0 0 0 0 0.68 1.00 -8033 AGTPBP1 ATP/GTP binding protein 1 1837875 1 1 1 0 0 0 0 0 1 0 0.68 1.00 -8034 TIPARP TCDD-inducible poly(ADP-ribose) polymerase 1010958 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -8035 DAAM1 dishevelled associated activator of morphogenesis 1 1691859 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -8036 PHLDB2 pleckstrin homology-like domain, family B, member 2 1917474 1 1 1 0 0 0 0 1 0 0 0.68 1.00 -8037 NCL nucleolin 1098669 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -8038 C10orf28 chromosome 10 open reading frame 28 1197027 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -8039 TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 1234038 1 1 1 1 0 0 1 0 0 0 0.68 1.00 -8040 XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble 991692 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -8041 SEC16B SEC16 homolog B (S. cerevisiae) 1469286 1 1 1 1 0 0 0 1 0 0 0.68 1.00 -8042 DOPEY1 dopey family member 1 3825822 3 3 3 1 0 1 1 0 1 0 0.68 1.00 -8043 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 1486524 1 1 1 1 1 0 0 0 0 0 0.68 1.00 -8044 KDR kinase insert domain receptor (a type III receptor tyrosine kinase) 2088840 2 2 2 3 0 2 0 0 0 0 0.68 1.00 -8045 PADI3 peptidyl arginine deiminase, type III 1042899 1 1 1 1 0 0 1 0 0 0 0.68 1.00 -8046 TRPV4 transient receptor potential cation channel, subfamily V, member 4 1275612 1 1 1 1 1 0 0 0 0 0 0.68 1.00 -8047 GCN1L1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) 4061070 4 4 4 4 1 1 1 0 1 0 0.68 1.00 -8048 NUP107 nucleoporin 107kDa 1465230 1 1 1 0 0 0 0 1 0 0 0.68 1.00 -8049 C1orf125 chromosome 1 open reading frame 125 1591473 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -8050 LRP1 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 6692907 7 7 7 4 4 1 1 0 1 0 0.68 1.00 -8051 SLC5A11 solute carrier family 5 (sodium/glucose cotransporter), member 11 1058616 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -8052 ALS2CR8 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8 1132638 1 1 1 0 0 0 1 0 0 0 0.68 1.00 -8053 LRP6 low density lipoprotein receptor-related protein 6 2479230 2 2 2 2 1 1 0 0 0 0 0.68 1.00 -8054 SMEK1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) 1205139 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -8055 PEX5L peroxisomal biogenesis factor 5-like 984087 1 1 1 0 1 0 0 0 0 0 0.68 1.00 -8056 UHRF1BP1L UHRF1 (ICBP90) binding protein 1-like 2258685 2 2 2 1 1 0 1 0 0 0 0.68 1.00 -8057 TBC1D15 TBC1 domain family, member 15 1110330 1 1 1 0 0 0 0 1 0 0 0.68 1.00 -8058 ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 4564521 4 4 4 1 0 0 2 1 1 0 0.68 1.00 -8059 CYLD cylindromatosis (turban tumor syndrome) 1490073 1 1 1 0 0 1 0 0 0 0 0.68 1.00 -8060 FAM184A 1689324 1 1 1 1 0 0 0 1 0 0 0.68 1.00 -8061 TNC tenascin C (hexabrachion) 3403998 3 3 3 0 1 1 1 0 0 0 0.68 1.00 -8062 TBCK 1310595 1 1 1 1 0 1 0 0 0 0 0.68 1.00 -8063 ZNFX1 zinc finger, NFX1-type containing 1 2945163 2 2 2 2 0 2 0 0 0 0 0.68 1.00 -8064 FGD5 FYVE, RhoGEF and PH domain containing 5 1746615 1 1 1 2 0 1 0 0 0 0 0.68 1.00 -8065 EVC Ellis van Creveld syndrome 1098162 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -8066 DISC1 disrupted in schizophrenia 1 1369407 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8067 DCHS1 dachsous 1 (Drosophila) 3643809 3 3 3 0 0 2 1 0 0 0 0.69 1.00 -8068 PRDM2 PR domain containing 2, with ZNF domain 2599896 2 2 2 1 0 1 0 0 1 0 0.69 1.00 -8069 SON SON DNA binding protein 3515538 3 3 3 0 0 0 1 1 1 0 0.69 1.00 -8070 SASH1 SAM and SH3 domain containing 1 1853085 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -8071 CDKL5 cyclin-dependent kinase-like 5 1608711 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -8072 KDM2B 1731912 1 1 1 3 0 1 0 0 0 0 0.69 1.00 -8073 RNF157 ring finger protein 157 1006395 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -8074 NAV2 neuron navigator 2 3654456 3 3 3 0 0 0 2 0 1 0 0.69 1.00 -8075 MCM2 minichromosome maintenance complex component 2 1345071 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8076 AVIL advillin 1285752 1 1 1 0 0 0 0 1 0 0 0.69 1.00 -8077 BEST3 bestrophin 3 1035801 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -8078 FBLN1 fibulin 1 1129596 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -8079 USP7 ubiquitin specific peptidase 7 (herpes virus-associated) 1698450 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8080 GIGYF2 GRB10 interacting GYF protein 2 1945359 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -8081 ACRC acidic repeat containing 1044927 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -8082 CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 1414023 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -8083 ASAP2 1415037 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -8084 INTS2 integrator complex subunit 2 1875393 1 1 1 2 0 0 0 0 1 0 0.69 1.00 -8085 NWD1 NACHT and WD repeat domain containing 1 2159313 2 2 2 4 1 0 0 1 0 0 0.69 1.00 -8086 MPHOSPH8 M-phase phosphoprotein 8 1227954 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -8087 FRMD4B FERM domain containing 4B 1500720 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8088 UPF2 UPF2 regulator of nonsense transcripts homolog (yeast) 1978821 1 1 1 1 0 0 0 0 1 0 0.69 1.00 -8089 MDC1 mediator of DNA damage checkpoint 1 3207282 3 3 3 0 0 1 0 1 1 0 0.69 1.00 -8090 LUZP1 leucine zipper protein 1 1642173 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8091 ATXN2L ataxin 2-like 1647243 1 1 1 4 1 0 0 0 0 0 0.69 1.00 -8092 SPG11 spastic paraplegia 11 (autosomal recessive) 3665610 3 3 3 1 0 1 1 0 1 0 0.69 1.00 -8093 ABCA12 ATP-binding cassette, sub-family A (ABC1), member 12 4071717 4 4 4 1 0 1 2 1 0 0 0.69 1.00 -8094 PPP1R12A protein phosphatase 1, regulatory (inhibitor) subunit 12A 1429740 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8095 DAAM2 dishevelled associated activator of morphogenesis 2 1499199 1 1 1 1 0 1 0 0 0 0 0.69 1.00 -8096 CD109 CD109 molecule 2226744 2 2 2 0 0 1 1 0 0 0 0.69 1.00 -8097 VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) 1222884 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -8098 USP31 ubiquitin specific peptidase 31 1767402 1 1 1 2 1 0 0 0 0 0 0.69 1.00 -8099 FNIP1 folliculin interacting protein 1 1762839 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8100 HERC5 hect domain and RLD 5 1469286 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -8101 MMP16 matrix metallopeptidase 16 (membrane-inserted) 1024140 1 1 1 1 0 0 1 0 0 0 0.69 1.00 -8102 RECQL5 RecQ protein-like 5 1481961 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -8103 FIGNL1 fidgetin-like 1 1028703 1 1 1 0 1 0 0 0 0 0 0.69 1.00 -8104 CDH17 cadherin 17, LI cadherin (liver-intestine) 1301469 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -8105 HSPH1 heat shock 105kDa/110kDa protein 1 1342536 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8106 INO80 2439177 2 2 2 0 1 0 0 0 1 0 0.69 1.00 -8107 WNK4 WNK lysine deficient protein kinase 4 1738503 1 1 1 0 0 1 0 0 0 0 0.69 1.00 -8108 SLC4A10 solute carrier family 4, sodium bicarbonate transporter-like, member 10 1658904 1 1 1 0 0 0 1 0 0 0 0.69 1.00 -8109 PLXNC1 plexin C1 1908855 1 1 1 1 1 0 0 0 0 0 0.69 1.00 -8110 PFAS phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) 1896687 1 1 1 1 0 1 0 0 0 0 0.69 1.00 -8111 C12orf63 chromosome 12 open reading frame 63 1874886 1 1 1 0 0 0 0 0 1 0 0.70 1.00 -8112 SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 1514409 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -8113 GRIA4 glutamate receptor, ionotrophic, AMPA 4 1541280 1 1 1 1 0 0 1 0 0 0 0.70 1.00 -8114 CCDC21 coiled-coil domain containing 21 1130103 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -8115 COBL cordon-bleu homolog (mouse) 1917981 1 1 1 2 1 0 0 0 0 0 0.70 1.00 -8116 MORC2 MORC family CW-type zinc finger 2 1513395 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -8117 ANO3 1548378 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -8118 RPGRIP1L RPGRIP1-like 1982370 1 1 1 1 0 0 0 1 0 0 0.70 1.00 -8119 KIAA1429 KIAA1429 2833623 2 2 2 0 1 0 1 0 0 0 0.70 1.00 -8120 HEATR6 HEAT repeat containing 6 1725321 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -8121 KIF3A kinesin family member 3A 1094613 1 1 1 0 0 1 0 0 0 0 0.70 1.00 -8122 PLEKHA4 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 1119456 1 1 1 3 0 1 0 0 0 0 0.70 1.00 -8123 GRAMD1A GRAM domain containing 1A 1069770 1 1 1 0 1 0 0 0 0 0 0.70 1.00 -8124 UBR2 ubiquitin protein ligase E3 component n-recognin 2 2741856 2 2 2 1 0 1 1 0 0 0 0.70 1.00 -8125 PCNX pecanex homolog (Drosophila) 3555591 3 3 3 0 1 1 1 0 0 0 0.70 1.00 -8126 ARHGEF2 rho/rac guanine nucleotide exchange factor (GEF) 2 1447992 1 1 1 2 0 0 1 0 0 0 0.70 1.00 -8127 POLG polymerase (DNA directed), gamma 1692873 1 1 1 1 0 1 0 0 0 0 0.70 1.00 -8128 ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 2959359 2 2 2 0 0 1 0 0 1 0 0.70 1.00 -8129 ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 1693887 1 1 1 5 1 0 0 0 0 0 0.70 1.00 -8130 KCTD3 potassium channel tetramerisation domain containing 3 1233531 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -8131 TOP3A topoisomerase (DNA) III alpha 1466244 1 1 1 0 0 0 0 0 1 0 0.70 1.00 -8132 MYCBP2 MYC binding protein 2 7129941 6 6 6 1 1 0 3 0 2 0 0.70 1.00 -8133 MAP3K15 mitogen-activated protein kinase kinase kinase 15 1835340 1 1 1 1 1 0 0 0 0 0 0.70 1.00 -8134 VAV3 vav 3 guanine nucleotide exchange factor 1306032 1 1 1 0 0 0 1 0 0 0 0.70 1.00 -8135 LIMK2 LIM domain kinase 2 1120977 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -8136 COPA coatomer protein complex, subunit alpha 1943838 1 1 1 0 0 0 1 0 0 0 0.71 1.00 -8137 CUL5 cullin 5 1213251 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -8138 SDAD1 SDA1 domain containing 1 1089543 1 1 1 1 0 0 1 0 0 0 0.71 1.00 -8139 BCAN brevican 1362816 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -8140 CENPJ centromere protein J 2069067 2 2 2 0 0 2 0 0 0 0 0.71 1.00 -8141 FN1 fibronectin 1 3745716 3 3 3 2 0 1 1 1 0 0 0.71 1.00 -8142 RAD50 RAD50 homolog (S. cerevisiae) 2047773 1 1 1 0 0 0 0 1 0 0 0.71 1.00 -8143 PPEF2 protein phosphatase, EF-hand calcium binding domain 2 1179282 1 1 1 1 0 0 0 1 0 0 0.71 1.00 -8144 KDM4A 1662453 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -8145 NAALAD2 N-acetylated alpha-linked acidic dipeptidase 2 1165593 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -8146 DUOX2 dual oxidase 2 2097459 1 1 1 1 0 0 0 0 1 0 0.71 1.00 -8147 STAG2 stromal antigen 2 1997073 1 1 1 0 0 0 0 1 0 0 0.71 1.00 -8148 OGDHL oxoglutarate dehydrogenase-like 1523028 1 1 1 1 0 1 0 0 0 0 0.71 1.00 -8149 GPR112 G protein-coupled receptor 112 4731831 4 4 4 1 1 2 0 0 1 0 0.71 1.00 -8150 EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 2443740 2 2 2 1 0 1 0 0 1 0 0.71 1.00 -8151 CCDC88A coiled-coil domain containing 88A 2867592 2 2 2 0 0 0 1 0 1 0 0.71 1.00 -8152 PCCA propionyl Coenzyme A carboxylase, alpha polypeptide 1072812 1 1 1 0 0 0 1 0 0 0 0.71 1.00 -8153 KTN1 kinectin 1 (kinesin receptor) 2157285 2 2 2 1 0 1 0 1 0 0 0.71 1.00 -8154 C9orf93 chromosome 9 open reading frame 93 2069067 1 1 1 0 0 0 0 0 1 0 0.71 1.00 -8155 RINT1 RAD50 interactor 1 1213251 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -8156 ANKRD26 ankyrin repeat domain 26 2671383 2 2 2 1 0 0 1 0 1 0 0.71 1.00 -8157 LRRC37A3 leucine rich repeat containing 37, member A3 2154243 2 2 2 0 0 1 1 0 0 0 0.71 1.00 -8158 DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 1903785 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -8159 IGF1R insulin-like growth factor 1 receptor 2011776 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -8160 LDLR low density lipoprotein receptor (familial hypercholesterolemia) 1314144 1 1 1 3 0 1 0 0 0 0 0.71 1.00 -8161 TLK2 tousled-like kinase 2 1184859 1 1 1 0 0 0 1 0 0 0 0.71 1.00 -8162 ABCA10 ATP-binding cassette, sub-family A (ABC1), member 10 2423460 2 2 2 1 0 2 0 0 0 0 0.71 1.00 -8163 DNAH5 dynein, axonemal, heavy chain 5 7090395 7 7 7 5 3 2 2 0 0 0 0.71 1.00 -8164 CSMD2 CUB and Sushi multiple domains 2 5281419 5 5 5 1 1 3 0 1 0 0 0.71 1.00 -8165 PCDHGA4 protocadherin gamma subfamily A, 4 1432275 1 1 1 1 0 0 1 0 0 0 0.71 1.00 -8166 PROM1 prominin 1 1246713 1 1 1 0 0 0 1 0 0 0 0.71 1.00 -8167 MBTPS1 membrane-bound transcription factor peptidase, site 1 1478412 1 1 1 1 1 0 0 0 0 0 0.71 1.00 -8168 THADA thyroid adenoma associated 2877732 2 2 2 0 0 1 0 1 0 0 0.71 1.00 -8169 SEC23A Sec23 homolog A (S. cerevisiae) 1203618 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -8170 JAG1 jagged 1 (Alagille syndrome) 1706562 1 1 1 0 1 0 0 0 0 0 0.71 1.00 -8171 SDCCAG1 serologically defined colon cancer antigen 1 1705041 1 1 1 0 0 1 0 0 0 0 0.71 1.00 -8172 CCDC18 coiled-coil domain containing 18 2073123 1 1 1 2 0 0 0 0 1 0 0.71 1.00 -8173 ZFAT zinc finger and AT hook domain containing 1788696 1 1 1 0 0 0 0 0 1 0 0.71 1.00 -8174 AHNAK2 AHNAK nucleoprotein 2 8289957 8 7 8 7 0 4 1 0 1 2 0.72 1.00 -8175 POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 2983695 2 2 2 0 0 0 2 0 0 0 0.72 1.00 -8176 ADAMTSL3 ADAMTS-like 3 2632344 2 2 2 3 2 0 0 0 0 0 0.72 1.00 -8177 NUFIP2 nuclear fragile X mental retardation protein interacting protein 2 1066221 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8178 MEGF8 multiple EGF-like-domains 8 2744898 2 2 2 2 0 1 0 0 1 0 0.72 1.00 -8179 PCDHGC4 protocadherin gamma subfamily C, 4 1487031 1 1 1 0 0 0 0 0 1 0 0.72 1.00 -8180 CDHR2 1856634 1 1 1 1 1 0 0 0 0 0 0.72 1.00 -8181 SPTBN4 spectrin, beta, non-erythrocytic 4 2070081 1 1 1 3 0 0 0 1 0 0 0.72 1.00 -8182 LAMC3 laminin, gamma 3 1912911 1 1 1 3 0 0 0 1 0 0 0.72 1.00 -8183 ZNF335 zinc finger protein 335 1948401 1 1 1 2 0 0 0 1 0 0 0.72 1.00 -8184 CUL9 3903900 3 3 3 1 1 0 2 0 0 0 0.72 1.00 -8185 THBS3 thrombospondin 3 1488552 1 1 1 2 0 0 1 0 0 0 0.72 1.00 -8186 HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 3734055 3 3 3 0 1 0 0 1 1 0 0.72 1.00 -8187 PCDHA12 protocadherin alpha 12 1321242 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8188 GRM8 glutamate receptor, metabotropic 8 1428219 1 1 1 1 0 0 0 0 1 0 0.72 1.00 -8189 HECTD2 HECT domain containing 2 1164579 1 1 1 1 0 0 1 0 0 0 0.72 1.00 -8190 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 1874379 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8191 ROCK2 Rho-associated, coiled-coil containing protein kinase 2 2125344 2 2 2 0 1 0 1 0 0 0 0.72 1.00 -8192 ZSWIM5 zinc finger, SWIM-type containing 5 1528605 1 1 1 1 1 0 0 0 0 0 0.72 1.00 -8193 LRRC16B leucine rich repeat containing 16B 1957020 1 1 1 0 0 0 0 1 0 0 0.72 1.00 -8194 EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 1423656 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8195 KIF5B kinesin family member 5B 1451034 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8196 KIRREL2 kin of IRRE like 2 (Drosophila) 1115907 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -8197 SENP6 SUMO1/sentrin specific peptidase 6 1713153 1 1 1 1 0 0 1 0 0 0 0.72 1.00 -8198 TTLL4 tubulin tyrosine ligase-like family, member 4 1861704 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -8199 VPS52 vacuolar protein sorting 52 homolog (S. cerevisiae) 1108809 1 1 1 1 1 0 0 0 0 0 0.72 1.00 -8200 WNK1 WNK lysine deficient protein kinase 1 4052451 3 3 3 0 0 1 1 1 0 0 0.72 1.00 -8201 HNRNPM 1084980 1 1 1 0 1 0 0 0 0 0 0.72 1.00 -8202 NEDD4 neural precursor cell expressed, developmentally down-regulated 4 2121288 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8203 COL9A1 collagen, type IX, alpha 1 1453062 1 1 1 1 1 0 0 0 0 0 0.72 1.00 -8204 FAM160B1 1174719 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8205 ADAM18 ADAM metallopeptidase domain 18 1166100 1 1 1 0 0 1 0 0 0 0 0.72 1.00 -8206 YEATS2 YEATS domain containing 2 2185170 2 2 2 0 1 0 1 0 0 0 0.72 1.00 -8207 BOD1L 4290741 5 4 5 2 0 2 2 1 0 0 0.73 1.00 -8208 OTUD4 OTU domain containing 4 1577784 1 1 1 2 0 0 1 0 0 0 0.73 1.00 -8209 DNM2 dynamin 2 1258881 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -8210 MAMLD1 mastermind-like domain containing 1 1213251 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -8211 ITGA10 integrin, alpha 10 1827735 1 1 1 3 1 0 0 0 0 0 0.73 1.00 -8212 HIP1 huntingtin interacting protein 1 1524042 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -8213 REV3L REV3-like, catalytic subunit of DNA polymerase zeta (yeast) 4754646 4 4 4 0 1 0 3 0 0 0 0.73 1.00 -8214 CSDE1 cold shock domain containing E1, RNA-binding 1251783 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -8215 CARD6 caspase recruitment domain family, member 6 1584882 1 1 1 1 0 0 1 0 0 0 0.73 1.00 -8216 HERC4 hect domain and RLD 4 1657890 1 1 1 1 0 0 0 0 1 0 0.73 1.00 -8217 KIAA0564 KIAA0564 2907645 2 2 2 0 0 1 0 0 1 0 0.73 1.00 -8218 MALT1 mucosa associated lymphoid tissue lymphoma translocation gene 1 1181310 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -8219 BNC2 basonuclin 2 1683747 1 1 1 0 0 1 0 0 0 0 0.73 1.00 -8220 KIAA1409 KIAA1409 3815682 3 3 3 1 0 2 0 0 1 0 0.73 1.00 -8221 FAM91A1 family with sequence similarity 91, member A1 1286259 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -8222 SUPT16H suppressor of Ty 16 homolog (S. cerevisiae) 1646736 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -8223 AHR aryl hydrocarbon receptor 1278654 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -8224 ZFYVE26 zinc finger, FYVE domain containing 26 3860805 3 3 3 0 1 1 1 0 0 0 0.73 1.00 -8225 KCNH5 potassium voltage-gated channel, subfamily H (eag-related), member 5 1543815 1 1 1 3 1 0 0 0 0 0 0.73 1.00 -8226 ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B 2098473 1 1 1 0 0 0 1 0 0 0 0.73 1.00 -8227 ESYT2 1162044 1 1 1 2 0 0 1 0 0 0 0.73 1.00 -8228 SMC2 structural maintenance of chromosomes 2 1870830 1 1 1 2 0 1 0 0 0 0 0.73 1.00 -8229 ODZ3 odz, odd Oz/ten-m homolog 3 (Drosophila) 3632148 3 3 3 2 2 1 0 0 0 0 0.73 1.00 -8230 PHC2 polyhomeotic homolog 2 (Drosophila) 1261416 1 1 1 0 0 0 0 1 0 0 0.73 1.00 -8231 AGBL1 ATP/GTP binding protein-like 1 1578798 1 1 1 1 0 1 0 0 0 0 0.73 1.00 -8232 OSBPL1A oxysterol binding protein-like 1A 1501227 1 1 1 1 0 0 0 0 1 0 0.73 1.00 -8233 NAT10 N-acetyltransferase 10 1617330 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -8234 FLG2 filaggrin family member 2 3642288 3 3 3 2 1 1 0 1 0 0 0.73 1.00 -8235 ZZZ3 zinc finger, ZZ-type containing 3 1397292 1 1 1 0 1 0 0 0 0 0 0.73 1.00 -8236 COL3A1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) 2050308 1 1 1 1 0 0 0 0 1 0 0.74 1.00 -8237 ZNF318 zinc finger protein 318 3283839 3 3 3 0 1 2 0 0 0 0 0.74 1.00 -8238 NLRP8 NLR family, pyrin domain containing 8 1615809 1 1 1 1 0 0 0 1 0 0 0.74 1.00 -8239 HERC6 hect domain and RLD 6 1273584 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -8240 DOCK9 dedicator of cytokinesis 9 3073941 2 2 2 1 0 1 0 1 0 0 0.74 1.00 -8241 TRANK1 3687918 3 3 3 0 1 0 2 0 0 0 0.74 1.00 -8242 TTBK2 tau tubulin kinase 2 1922037 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -8243 SPTBN1 spectrin, beta, non-erythrocytic 1 3767517 3 3 3 1 0 1 1 1 0 0 0.74 1.00 -8244 MAML2 mastermind-like 2 (Drosophila) 1402869 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -8245 CEP110 centrosomal protein 110kDa 3623022 3 3 3 0 0 2 1 0 0 0 0.74 1.00 -8246 RSF1 remodeling and spacing factor 1 2128893 1 1 1 0 0 0 0 1 0 0 0.74 1.00 -8247 RNF213 ring finger protein 213 6511401 6 6 6 3 0 2 3 0 1 0 0.74 1.00 -8248 TNIK TRAF2 and NCK interacting kinase 1958034 1 1 1 2 0 0 1 0 0 0 0.74 1.00 -8249 ZBBX zinc finger, B-box domain containing 1254825 1 1 1 2 1 0 0 0 0 0 0.74 1.00 -8250 ABCC10 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 2268825 2 2 2 0 2 0 0 0 0 0 0.74 1.00 -8251 SEC63 SEC63 homolog (S. cerevisiae) 1181817 1 1 1 1 1 0 0 0 0 0 0.74 1.00 -8252 MPDZ multiple PDZ domain protein 3158610 2 2 2 1 0 0 1 0 1 0 0.74 1.00 -8253 BANK1 B-cell scaffold protein with ankyrin repeats 1 1190436 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -8254 PLCH1 phospholipase C, eta 1 2566941 2 2 2 0 0 1 1 0 0 0 0.74 1.00 -8255 SLIT1 slit homolog 1 (Drosophila) 2063490 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -8256 MLL2 myeloid/lymphoid or mixed-lineage leukemia 2 7399158 6 6 6 2 1 3 1 0 1 0 0.74 1.00 -8257 WDR36 WD repeat domain 36 1494636 1 1 1 0 0 0 1 0 0 0 0.74 1.00 -8258 SSH2 slingshot homolog 2 (Drosophila) 2162355 1 1 1 0 0 0 0 1 0 0 0.74 1.00 -8259 ATAD5 ATPase family, AAA domain containing 5 2822469 2 2 2 2 0 0 2 0 0 0 0.74 1.00 -8260 NPR1 natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) 1197027 1 1 1 0 1 0 0 0 0 0 0.74 1.00 -8261 TCOF1 Treacher Collins-Franceschetti syndrome 1 2251080 1 1 1 1 0 0 0 0 1 0 0.74 1.00 -8262 ATXN7 ataxin 7 1304511 1 1 1 0 0 1 0 0 0 0 0.74 1.00 -8263 PLK4 polo-like kinase 4 (Drosophila) 1492101 1 1 1 0 0 0 1 0 0 0 0.74 1.00 -8264 PIK3C2B phosphoinositide-3-kinase, class 2, beta polypeptide 2474160 2 2 2 1 0 1 1 0 0 0 0.74 1.00 -8265 CUX2 cut-like homeobox 2 1603641 1 1 1 0 0 0 0 1 0 0 0.74 1.00 -8266 ETAA1 Ewing tumor-associated antigen 1 1307046 1 1 1 1 0 0 0 1 0 0 0.74 1.00 -8267 KIAA0753 KIAA0753 1452555 1 1 1 1 0 0 0 1 0 0 0.75 1.00 -8268 IPO9 importin 9 1548885 1 1 1 1 0 0 1 0 0 0 0.75 1.00 -8269 BAI2 brain-specific angiogenesis inhibitor 2 1278654 2 1 2 1 2 0 0 0 0 0 0.75 1.00 -8270 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 1558518 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -8271 BCAS3 breast carcinoma amplified sequence 3 1461681 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -8272 CLIP1 CAP-GLY domain containing linker protein 1 2220153 1 1 1 2 0 0 1 0 0 0 0.75 1.00 -8273 ATP2B4 ATPase, Ca++ transporting, plasma membrane 4 1967160 1 1 1 1 0 1 0 0 0 0 0.75 1.00 -8274 BSN bassoon (presynaptic cytomatrix protein) 5491317 4 4 4 2 0 2 0 0 2 0 0.75 1.00 -8275 PCDH17 protocadherin 17 1328340 2 1 2 1 0 0 2 0 0 0 0.75 1.00 -8276 WDFY3 WD repeat and FYVE domain containing 3 5500443 5 5 5 1 0 2 0 0 3 0 0.75 1.00 -8277 PIK3C2A phosphoinositide-3-kinase, class 2, alpha polypeptide 2630823 2 2 2 0 0 1 0 0 1 0 0.75 1.00 -8278 KIAA0586 KIAA0586 2162862 1 1 1 0 0 0 1 0 0 0 0.75 1.00 -8279 ABCC5 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 2266290 1 1 1 1 0 0 0 1 0 0 0.75 1.00 -8280 PDE5A phosphodiesterase 5A, cGMP-specific 1290315 1 1 1 1 0 1 0 0 0 0 0.75 1.00 -8281 IRS4 insulin receptor substrate 4 1767402 1 1 1 0 0 0 1 0 0 0 0.75 1.00 -8282 NLRP13 NLR family, pyrin domain containing 13 1610232 1 1 1 1 0 0 1 0 0 0 0.75 1.00 -8283 DOCK8 dedicator of cytokinesis 8 3145935 2 2 2 1 0 0 1 0 1 0 0.75 1.00 -8284 BBS9 Bardet-Biedl syndrome 9 1395264 1 1 1 0 0 0 1 0 0 0 0.75 1.00 -8285 CDK13 1737489 1 1 1 0 0 1 0 0 0 0 0.75 1.00 -8286 MED14 mediator complex subunit 14 2139540 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -8287 SLIT3 slit homolog 3 (Drosophila) 2157792 1 1 1 0 0 0 1 0 0 0 0.75 1.00 -8288 ZNF560 zinc finger protein 560 1218828 1 1 1 1 1 0 0 0 0 0 0.75 1.00 -8289 LRIG2 leucine-rich repeats and immunoglobulin-like domains 2 1657890 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -8290 PTPRJ protein tyrosine phosphatase, receptor type, J 2039661 1 1 1 0 0 0 1 0 0 0 0.75 1.00 -8291 TACC2 transforming, acidic coiled-coil containing protein 2 4528524 8 4 8 0 2 3 1 2 0 0 0.75 1.00 -8292 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 5326542 5 5 5 2 0 3 1 0 1 0 0.75 1.00 -8293 C10orf137 chromosome 10 open reading frame 137 1824693 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -8294 SLC26A5 solute carrier family 26, member 5 (prestin) 1190436 1 1 1 0 1 0 0 0 0 0 0.75 1.00 -8295 WDR3 WD repeat domain 3 1488552 1 1 1 1 0 0 1 0 0 0 0.75 1.00 -8296 PRUNE2 prune homolog 2 (Drosophila) 4682652 4 4 4 1 0 3 1 0 0 0 0.75 1.00 -8297 TNR tenascin R (restrictin, janusin) 2109627 1 1 1 2 0 0 0 1 0 0 0.76 1.00 -8298 KIAA0528 KIAA0528 1571193 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -8299 ZMYM6 zinc finger, MYM-type 6 1480440 1 1 1 0 0 0 0 1 0 0 0.76 1.00 -8300 SPEF2 sperm flagellar 2 2827032 2 2 2 2 0 0 1 0 1 0 0.76 1.00 -8301 EEA1 early endosome antigen 1 2192268 1 1 1 2 0 0 1 0 0 0 0.76 1.00 -8302 MOV10 Mov10, Moloney leukemia virus 10, homolog (mouse) 1554969 1 1 1 1 0 1 0 0 0 0 0.76 1.00 -8303 DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13 3524664 3 3 3 0 0 1 2 0 0 0 0.76 1.00 -8304 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 1640145 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -8305 GPRC6A G protein-coupled receptor, family C, group 6, member A 1422135 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -8306 RBM16 RNA binding motif protein 16 1958034 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -8307 EVI5 ecotropic viral integration site 5 1270035 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -8308 C15orf42 chromosome 15 open reading frame 42 2619669 2 2 2 0 0 2 0 0 0 0 0.76 1.00 -8309 MRVI1 murine retrovirus integration site 1 homolog 1356732 1 1 1 0 0 0 0 1 0 0 0.76 1.00 -8310 TLR1 toll-like receptor 1 1199055 1 1 1 0 1 0 0 0 0 0 0.76 1.00 -8311 EPS15 epidermal growth factor receptor pathway substrate 15 1445964 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -8312 UBN2 1847508 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -8313 C3orf20 chromosome 3 open reading frame 20 1406418 1 1 1 0 0 1 0 0 0 0 0.76 1.00 -8314 BAT2 HLA-B associated transcript 2 3342651 1 1 1 1 0 0 0 0 1 0 0.76 1.00 -8315 NIN ninein (GSK3B interacting protein) 3293472 2 2 2 1 0 0 2 0 0 0 0.76 1.00 -8316 ABCC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 2116725 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -8317 CXorf22 chromosome X open reading frame 22 1518465 1 1 1 1 0 0 1 0 0 0 0.76 1.00 -8318 ZNF721 zinc finger protein 721 1409460 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -8319 DSCAM Down syndrome cell adhesion molecule 3053661 2 2 2 2 0 1 1 0 0 0 0.76 1.00 -8320 DIS3L DIS3 mitotic control homolog (S. cerevisiae)-like 1561560 1 1 1 0 0 0 1 0 0 0 0.76 1.00 -8321 WDR11 1860690 1 1 1 0 0 0 0 0 1 0 0.77 1.00 -8322 TAOK2 TAO kinase 2 2253615 1 1 1 1 0 1 0 0 0 0 0.77 1.00 -8323 PTPRB protein tyrosine phosphatase, receptor type, B 3358368 2 2 2 1 1 0 0 0 1 0 0.77 1.00 -8324 CUBN cubilin (intrinsic factor-cobalamin receptor) 5647980 5 5 5 1 1 2 1 0 1 0 0.77 1.00 -8325 CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 1562067 1 1 1 1 1 0 0 0 0 0 0.77 1.00 -8326 IDE insulin-degrading enzyme 1550406 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -8327 MARCH10 membrane-associated ring finger (C3HC4) 10 1250769 1 1 1 2 1 0 0 0 0 0 0.77 1.00 -8328 ATP11C ATPase, class VI, type 11C 1816074 1 1 1 1 1 0 0 0 0 0 0.77 1.00 -8329 AQR aquarius homolog (mouse) 2330679 1 1 1 0 0 0 0 1 0 0 0.77 1.00 -8330 NRXN1 neurexin 1 2161848 1 1 1 2 0 0 1 0 0 0 0.77 1.00 -8331 SYCP1 synaptonemal complex protein 1 1540266 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -8332 NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 2346903 1 1 1 1 0 0 0 0 1 0 0.77 1.00 -8333 TEK TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal) 1757769 1 1 1 2 0 1 0 0 0 0 0.77 1.00 -8334 C6orf167 chromosome 6 open reading frame 167 1940796 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -8335 DOCK4 dedicator of cytokinesis 4 2926911 2 2 2 0 0 0 1 0 1 0 0.77 1.00 -8336 PBRM1 polybromo 1 2545647 2 2 2 0 0 1 0 1 0 0 0.77 1.00 -8337 ZCCHC11 zinc finger, CCHC domain containing 11 2562378 2 2 2 0 1 1 0 0 0 0 0.77 1.00 -8338 DGKD diacylglycerol kinase, delta 130kDa 1775514 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -8339 SRRM1 serine/arginine repetitive matrix 1 1398306 1 1 1 0 1 0 0 0 0 0 0.77 1.00 -8340 ZNF518A zinc finger protein 518A 2258685 1 1 1 1 0 0 0 0 1 0 0.77 1.00 -8341 DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 1439373 1 1 1 3 1 0 0 0 0 0 0.77 1.00 -8342 LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 1615302 1 1 1 0 0 0 0 1 0 0 0.77 1.00 -8343 SLC12A6 solute carrier family 12 (potassium/chloride transporters), member 6 1863225 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -8344 CNTN3 contactin 3 (plasmacytoma associated) 1609725 1 1 1 0 0 0 1 0 0 0 0.77 1.00 -8345 DENND5A 1948401 1 1 1 1 0 0 0 0 1 0 0.77 1.00 -8346 FAM120A family with sequence similarity 120A 1442922 1 1 1 0 0 0 0 0 1 0 0.77 1.00 -8347 USP11 ubiquitin specific peptidase 11 1459653 1 1 1 2 0 1 0 0 0 0 0.77 1.00 -8348 LAMC2 laminin, gamma 2 1824693 1 1 1 0 0 1 0 0 0 0 0.77 1.00 -8349 ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 2576067 3 2 3 1 0 2 1 0 0 0 0.77 1.00 -8350 HKDC1 hexokinase domain containing 1 1432782 1 1 1 1 0 0 1 0 0 0 0.78 1.00 -8351 CCDC108 coiled-coil domain containing 108 2057913 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -8352 GRM5 glutamate receptor, metabotropic 5 1455090 1 1 1 0 1 0 0 0 0 0 0.78 1.00 -8353 ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 2732223 2 2 2 0 1 0 1 0 0 0 0.78 1.00 -8354 DNAH8 dynein, axonemal, heavy chain 8 7011303 5 5 5 2 3 1 0 0 1 0 0.78 1.00 -8355 KDM3B 2629302 2 2 2 0 0 2 0 0 0 0 0.78 1.00 -8356 CAND1 cullin-associated and neddylation-dissociated 1 1866267 1 1 1 1 0 1 0 0 0 0 0.78 1.00 -8357 DNAH10 dynein, axonemal, heavy chain 10 6027723 5 5 5 3 3 1 0 0 1 0 0.78 1.00 -8358 ZNF197 zinc finger protein 197 1596543 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -8359 USP40 ubiquitin specific peptidase 40 1680198 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -8360 TNXB tenascin XB 5446194 3 3 3 2 0 2 0 0 1 0 0.78 1.00 -8361 MAST2 microtubule associated serine/threonine kinase 2 2699268 2 2 2 0 0 1 1 0 0 0 0.78 1.00 -8362 NUP93 nucleoporin 93kDa 1289808 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -8363 SKIV2L2 superkiller viralicidic activity 2-like 2 (S. cerevisiae) 1641159 1 1 1 0 0 0 1 0 0 0 0.78 1.00 -8364 PPRC1 peroxisome proliferator-activated receptor gamma, coactivator-related 1 2481258 2 2 2 0 0 1 1 0 0 0 0.78 1.00 -8365 NARG2 NMDA receptor regulated 2 1525563 1 1 1 1 0 0 1 0 0 0 0.78 1.00 -8366 ASAP1 1711125 1 1 1 2 0 0 1 0 0 0 0.78 1.00 -8367 ACO1 aconitase 1, soluble 1394250 1 1 1 1 0 1 0 0 0 0 0.78 1.00 -8368 VPS13A vacuolar protein sorting 13 homolog A (S. cerevisiae) 5004597 4 4 4 1 1 1 1 1 0 0 0.78 1.00 -8369 NCAPD2 non-SMC condensin I complex, subunit D2 2195310 1 1 1 1 0 0 0 1 0 0 0.78 1.00 -8370 HECTD1 HECT domain containing 1 4056507 3 3 3 0 1 1 0 1 0 0 0.78 1.00 -8371 USH1C Usher syndrome 1C (autosomal recessive, severe) 1309581 1 1 1 1 1 0 0 0 0 0 0.78 1.00 -8372 ARHGAP32 3157596 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -8373 TDRD1 tudor domain containing 1 1860690 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -8374 NCOA6 nuclear receptor coactivator 6 3165708 2 2 2 0 0 0 0 2 0 0 0.79 1.00 -8375 EHBP1 EH domain binding protein 1 1862211 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -8376 DHX34 DEAH (Asp-Glu-Ala-His) box polypeptide 34 1532661 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -8377 CCDC158 1741038 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -8378 EGFLAM EGF-like, fibronectin type III and laminin G domains 1489566 1 1 1 2 0 1 0 0 0 0 0.79 1.00 -8379 DLEC1 deleted in lung and esophageal cancer 1 2836158 2 2 2 1 0 0 1 1 0 0 0.79 1.00 -8380 DNAH1 dynein, axonemal, heavy chain 1 5873595 4 4 4 2 1 1 1 0 1 0 0.79 1.00 -8381 NBAS 3713268 3 3 3 0 2 1 0 0 0 0 0.79 1.00 -8382 C15orf55 chromosome 15 open reading frame 55 1737489 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -8383 BBX bobby sox homolog (Drosophila) 1415544 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -8384 KDM5A 2619162 2 2 2 0 0 1 1 0 0 0 0.79 1.00 -8385 TRIM37 tripartite motif-containing 37 1507818 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -8386 TTLL5 tubulin tyrosine ligase-like family, member 5 2012790 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -8387 MTTP microsomal triglyceride transfer protein 1397799 1 1 1 2 1 0 0 0 0 0 0.79 1.00 -8388 USP4 ubiquitin specific peptidase 4 (proto-oncogene) 1497171 1 1 1 0 0 0 0 1 0 0 0.79 1.00 -8389 TTF2 transcription termination factor, RNA polymerase II 1815567 1 1 1 1 0 1 0 0 0 0 0.79 1.00 -8390 POLR3A polymerase (RNA) III (DNA directed) polypeptide A, 155kDa 2178579 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -8391 MYO5C myosin VC 2704845 2 2 2 1 1 0 0 0 1 0 0.79 1.00 -8392 EPHA4 EPH receptor A4 1535703 1 1 1 0 0 0 1 0 0 0 0.79 1.00 -8393 NUMA1 nuclear mitotic apparatus protein 1 3257982 2 2 2 0 1 0 1 0 0 0 0.79 1.00 -8394 SIGLEC1 sialic acid binding Ig-like lectin 1, sialoadhesin 1967667 1 1 1 2 0 1 0 0 0 0 0.79 1.00 -8395 PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 1354704 1 1 1 0 1 0 0 0 0 0 0.79 1.00 -8396 LPIN1 lipin 1 1381068 1 1 1 0 0 1 0 0 0 0 0.79 1.00 -8397 TMEM67 transmembrane protein 67 1570686 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -8398 PASK PAS domain containing serine/threonine kinase 1990989 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -8399 ZNF536 zinc finger protein 536 1833312 1 1 1 0 0 0 0 0 1 0 0.80 1.00 -8400 L1CAM L1 cell adhesion molecule 1935219 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -8401 CTNND1 catenin (cadherin-associated protein), delta 1 1489566 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -8402 USP34 ubiquitin specific peptidase 34 5533398 4 4 4 1 0 1 2 0 1 0 0.80 1.00 -8403 EXOSC10 exosome component 10 1398306 1 1 1 1 0 0 1 0 0 0 0.80 1.00 -8404 PCDH1 protocadherin 1 1869816 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -8405 CORIN corin, serine peptidase 1631019 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -8406 ARID5B AT rich interactive domain 5B (MRF1-like) 1828749 1 1 1 1 0 0 0 0 1 0 0.80 1.00 -8407 VPS13C vacuolar protein sorting 13 homolog C (S. cerevisiae) 5858385 6 5 6 0 3 1 0 2 0 0 0.80 1.00 -8408 CCDC73 coiled-coil domain containing 73 1656876 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -8409 ZC3H7A zinc finger CCCH-type containing 7A 1523028 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -8410 TENC1 tensin like C1 domain containing phosphatase (tensin 2) 2117232 1 1 1 1 0 1 0 0 0 0 0.80 1.00 -8411 COL7A1 collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive) 4462107 3 3 3 2 1 2 0 0 0 0 0.80 1.00 -8412 ZNF521 zinc finger protein 521 1987440 1 1 1 1 1 0 0 0 0 0 0.80 1.00 -8413 USP19 ubiquitin specific peptidase 19 1970202 1 1 1 0 1 0 0 0 0 0 0.80 1.00 -8414 RNF31 ring finger protein 31 1587417 1 1 1 0 0 1 0 0 0 0 0.80 1.00 -8415 EXOC4 exocyst complex component 4 1524042 1 1 1 0 0 0 1 0 0 0 0.80 1.00 -8416 PTPRT protein tyrosine phosphatase, receptor type, T 2209506 1 1 1 0 0 0 0 1 0 0 0.80 1.00 -8417 DYSF dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) 3111459 2 2 2 2 0 1 0 0 1 0 0.80 1.00 -8418 SYNRG 2003664 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -8419 FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) 1723800 1 1 1 1 0 0 0 0 1 0 0.81 1.00 -8420 DLG2 discs, large homolog 2, chapsyn-110 (Drosophila) 1583868 1 1 1 0 1 0 0 0 0 0 0.81 1.00 -8421 KIAA2018 KIAA2018 3426306 2 2 2 0 1 1 0 0 0 0 0.81 1.00 -8422 PARP4 poly (ADP-ribose) polymerase family, member 4 2658708 2 2 2 0 1 1 0 0 0 0 0.81 1.00 -8423 RPRD2 2224209 1 1 1 1 1 0 0 0 0 0 0.81 1.00 -8424 SLK STE20-like kinase (yeast) 1918488 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -8425 CLSTN1 calsyntenin 1 1477905 1 1 1 1 1 0 0 0 0 0 0.81 1.00 -8426 KIAA0100 KIAA0100 3443544 2 2 2 0 0 0 1 0 1 0 0.81 1.00 -8427 FAM13A 1622907 1 1 1 2 0 0 1 0 0 0 0.81 1.00 -8428 SOS2 son of sevenless homolog 2 (Drosophila) 2028000 1 1 1 0 0 1 0 0 0 0 0.81 1.00 -8429 MKL2 MKL/myocardin-like 2 1627470 1 1 1 0 0 0 1 0 0 0 0.81 1.00 -8430 CTTNBP2 cortactin binding protein 2 2534493 1 1 1 0 0 0 0 0 1 0 0.81 1.00 -8431 GEMIN5 gem (nuclear organelle) associated protein 5 2265783 1 1 1 1 0 0 1 0 0 0 0.81 1.00 -8432 SCUBE2 signal peptide, CUB domain, EGF-like 2 1496157 1 1 1 1 1 0 0 0 0 0 0.81 1.00 -8433 APC adenomatous polyposis coli 4356144 3 3 3 2 0 1 2 0 0 0 0.81 1.00 -8434 VPS13B vacuolar protein sorting 13 homolog B (yeast) 6198582 5 5 5 3 0 1 2 2 0 0 0.81 1.00 -8435 CREBBP CREB binding protein (Rubinstein-Taybi syndrome) 3243279 2 2 2 0 0 0 0 1 1 0 0.82 1.00 -8436 SPAG9 sperm associated antigen 9 1943838 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -8437 MYO3A myosin IIIA 2509650 1 1 1 6 0 0 1 0 0 0 0.82 1.00 -8438 FREM2 FRAS1 related extracellular matrix protein 2 4492020 3 3 3 1 0 2 0 1 0 0 0.82 1.00 -8439 CECR2 cat eye syndrome chromosome region, candidate 2 2072616 1 1 1 2 0 1 0 0 0 0 0.82 1.00 -8440 GARNL3 GTPase activating Rap/RanGAP domain-like 3 1599078 1 1 1 1 0 0 1 0 0 0 0.82 1.00 -8441 FAM83B family with sequence similarity 83, member B 1547364 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -8442 ZNF827 zinc finger protein 827 1662960 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -8443 KIF20B 2773797 2 2 2 1 1 0 0 0 1 0 0.82 1.00 -8444 C2CD3 C2 calcium-dependent domain containing 3 3050112 2 2 2 1 0 0 1 1 0 0 0.82 1.00 -8445 STARD13 StAR-related lipid transfer (START) domain containing 13 1755234 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -8446 C9orf79 chromosome 9 open reading frame 79 2207478 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -8447 MECOM 1921023 1 1 1 0 1 0 0 0 0 0 0.82 1.00 -8448 DLG5 discs, large homolog 5 (Drosophila) 2720562 2 2 2 1 1 0 1 0 0 0 0.82 1.00 -8449 MYO1E myosin IE 1690845 1 1 1 0 0 0 0 1 0 0 0.82 1.00 -8450 HEPHL1 hephaestin-like 1 1804920 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -8451 ATP7B ATPase, Cu++ transporting, beta polypeptide 2217618 1 1 1 2 0 1 0 0 0 0 0.82 1.00 -8452 DGKH diacylglycerol kinase, eta 1818609 1 1 1 0 0 0 1 0 0 0 0.82 1.00 -8453 TDRD5 tudor domain containing 5 1526070 1 1 1 2 0 0 1 0 0 0 0.82 1.00 -8454 GPR158 G protein-coupled receptor 158 1602120 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -8455 CYTSA 1683240 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -8456 NCOA1 nuclear receptor coactivator 1 2256657 1 1 1 0 0 1 0 0 0 0 0.82 1.00 -8457 TIAM1 T-cell lymphoma invasion and metastasis 1 2472132 1 1 1 1 0 0 0 0 1 0 0.82 1.00 -8458 FAM179B 2656173 1 1 1 0 0 0 0 0 1 0 0.83 1.00 -8459 KIAA1797 KIAA1797 2828046 3 2 3 0 1 0 0 1 1 0 0.83 1.00 -8460 ZC3H13 zinc finger CCCH-type containing 13 2412813 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -8461 MAN2A2 mannosidase, alpha, class 2A, member 2 1616823 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -8462 SLC4A8 solute carrier family 4, sodium bicarbonate cotransporter, member 8 1678677 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -8463 PLEKHG2 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 1841931 1 1 1 0 1 0 0 0 0 0 0.83 1.00 -8464 COL11A2 collagen, type XI, alpha 2 2712957 1 1 1 1 0 0 0 0 1 0 0.83 1.00 -8465 BIRC6 baculoviral IAP repeat-containing 6 (apollon) 7079241 6 6 6 1 2 3 0 0 1 0 0.83 1.00 -8466 KALRN kalirin, RhoGEF kinase 4681131 3 3 3 1 0 1 0 2 0 0 0.83 1.00 -8467 REST RE1-silencing transcription factor 1676142 1 1 1 0 0 0 0 1 0 0 0.83 1.00 -8468 ZZEF1 zinc finger, ZZ-type with EF-hand domain 1 4259307 4 3 4 0 0 1 1 0 0 2 0.83 1.00 -8469 MAP4 microtubule-associated protein 4 2413827 1 1 1 1 0 0 0 0 1 0 0.83 1.00 -8470 HPS5 Hermansky-Pudlak syndrome 5 1763346 1 1 1 0 0 0 1 0 0 0 0.83 1.00 -8471 RUSC2 RUN and SH3 domain containing 2 2302794 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -8472 OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 1601613 1 1 1 0 0 1 0 0 0 0 0.83 1.00 -8473 SYNPO2 synaptopodin 2 1944852 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -8474 XPO5 exportin 5 1897701 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -8475 PCF11 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) 2379351 1 1 1 0 0 0 1 0 0 0 0.84 1.00 -8476 DHX16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 1607697 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -8477 CMYA5 cardiomyopathy associated 5 6125574 5 5 5 1 2 2 1 0 0 0 0.84 1.00 -8478 NRD1 nardilysin (N-arginine dibasic convertase) 1875393 1 1 1 0 0 0 1 0 0 0 0.84 1.00 -8479 FRYL FRY-like 4661865 3 3 3 1 0 1 1 1 0 0 0.84 1.00 -8480 NBPF1 neuroblastoma breakpoint family, member 1 1724307 1 1 1 0 0 0 1 0 0 0 0.84 1.00 -8481 SGOL2 shugoshin-like 2 (S. pombe) 1941810 1 1 1 0 0 0 0 1 0 0 0.84 1.00 -8482 DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 7094451 5 5 5 0 1 0 2 1 1 0 0.84 1.00 -8483 RSPH10B2 1690845 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -8484 SF3B3 splicing factor 3b, subunit 3, 130kDa 1865253 1 1 1 1 0 1 0 0 0 0 0.84 1.00 -8485 SPTAN1 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) 3814668 2 2 2 0 0 1 1 0 0 0 0.84 1.00 -8486 AHI1 Abelson helper integration site 1 1882491 1 1 1 1 0 0 1 0 0 0 0.84 1.00 -8487 ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) 1789710 1 1 1 0 1 0 0 0 0 0 0.84 1.00 -8488 GAPVD1 GTPase activating protein and VPS9 domains 1 2315976 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -8489 CRB1 crumbs homolog 1 (Drosophila) 2164383 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -8490 UHRF1BP1 UHRF1 (ICBP90) binding protein 1 2210013 1 1 1 0 0 1 0 0 0 0 0.84 1.00 -8491 MACF1 microtubule-actin crosslinking factor 1 11580894 10 10 10 0 2 2 2 1 3 0 0.84 1.00 -8492 NEBL nebulette 1752699 1 1 1 1 1 0 0 0 0 0 0.84 1.00 -8493 WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 2270853 1 1 1 0 0 0 1 0 0 0 0.85 1.00 -8494 ANKHD1-EIF4EBP3 ANKHD1-EIF4EBP3 3897816 1 1 1 0 0 0 0 0 1 0 0.85 1.00 -8495 SYNJ2 synaptojanin 2 2179593 1 1 1 2 0 0 0 0 1 0 0.85 1.00 -8496 RAB11FIP1 RAB11 family interacting protein 1 (class I) 1775007 1 1 1 1 0 1 0 0 0 0 0.85 1.00 -8497 DENND5B 1772979 1 1 1 0 0 0 0 1 0 0 0.85 1.00 -8498 ANLN anillin, actin binding protein 1757769 1 1 1 1 0 1 0 0 0 0 0.85 1.00 -8499 ATP8B2 ATPase, class I, type 8B, member 2 1984398 1 1 1 1 0 0 1 0 0 0 0.85 1.00 -8500 RYR1 ryanodine receptor 1 (skeletal) 6970236 5 5 5 4 3 1 1 0 0 0 0.85 1.00 -8501 COL11A1 collagen, type XI, alpha 1 2923869 2 2 2 2 1 0 1 0 0 0 0.85 1.00 -8502 ZNF638 zinc finger protein 638 3064815 2 2 2 1 0 0 1 0 1 0 0.85 1.00 -8503 PIKFYVE 3281304 2 2 2 3 0 0 2 0 0 0 0.85 1.00 -8504 IFT172 intraflagellar transport 172 homolog (Chlamydomonas) 2759094 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -8505 TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 1726842 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -8506 IQGAP1 IQ motif containing GTPase activating protein 1 2566434 1 1 1 0 0 1 0 0 0 0 0.85 1.00 -8507 TTC3 tetratricopeptide repeat domain 3 3172806 2 2 2 1 0 1 0 1 0 0 0.85 1.00 -8508 CDK12 2278458 1 1 1 2 1 0 0 0 0 0 0.85 1.00 -8509 NOMO1 NODAL modulator 1 1743573 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -8510 FAM193A 1851057 1 1 1 0 0 0 0 0 1 0 0.85 1.00 -8511 PALM2-AKAP2 PALM2-AKAP2 1701492 1 1 1 0 1 0 0 0 0 0 0.85 1.00 -8512 TTC37 2461485 1 1 1 1 0 0 1 0 0 0 0.85 1.00 -8513 ARAP1 1873365 1 1 1 0 0 0 1 0 0 0 0.85 1.00 -8514 PLD1 phospholipase D1, phosphatidylcholine-specific 1687803 1 1 1 1 0 1 0 0 0 0 0.85 1.00 -8515 TOP2A topoisomerase (DNA) II alpha 170kDa 2209506 1 1 1 0 0 0 0 1 0 0 0.86 1.00 -8516 KDM5B 2307864 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -8517 NUP210L nucleoporin 210kDa-like 2943135 2 2 2 0 0 1 0 1 0 0 0.86 1.00 -8518 ROS1 c-ros oncogene 1 , receptor tyrosine kinase 3658512 2 2 2 0 0 1 0 0 1 0 0.86 1.00 -8519 NRCAM neuronal cell adhesion molecule 2052843 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -8520 MAPKBP1 mitogen-activated protein kinase binding protein 1 2321553 1 1 1 2 1 0 0 0 0 0 0.86 1.00 -8521 TDRD6 tudor domain containing 6 2796105 1 1 1 1 0 0 1 0 0 0 0.86 1.00 -8522 KIF13B kinesin family member 13B 2268318 1 1 1 0 1 0 0 0 0 0 0.86 1.00 -8523 AKAP13 A kinase (PRKA) anchor protein 13 4251702 3 3 3 2 1 2 0 0 0 0 0.86 1.00 -8524 ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 2884323 1 1 1 1 0 0 0 0 1 0 0.86 1.00 -8525 CHD2 chromodomain helicase DNA binding protein 2 2861001 1 1 1 1 0 0 1 0 0 0 0.86 1.00 -8526 C1orf173 chromosome 1 open reading frame 173 2342847 1 1 1 1 1 0 0 0 0 0 0.86 1.00 -8527 C1orf9 chromosome 1 open reading frame 9 1924065 1 1 1 0 0 0 1 0 0 0 0.86 1.00 -8528 KIAA1632 KIAA1632 3955614 2 2 2 1 0 1 1 0 0 0 0.86 1.00 -8529 EIF3A eukaryotic translation initiation factor 3, subunit A 2121288 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -8530 EFCAB6 EF-hand calcium binding domain 6 2343354 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -8531 FCGBP Fc fragment of IgG binding protein 5816304 4 4 4 1 0 4 0 0 0 0 0.87 1.00 -8532 LYST lysosomal trafficking regulator 5873595 4 4 4 1 2 1 0 0 1 0 0.87 1.00 -8533 HERC2 hect domain and RLD 2 7320573 5 5 5 2 1 3 0 0 1 0 0.87 1.00 -8534 ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11 2459457 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -8535 XRN1 5'-3' exoribonuclease 1 2669355 1 1 1 0 0 1 0 0 0 0 0.87 1.00 -8536 RNF160 2790528 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -8537 USP6 ubiquitin specific peptidase 6 (Tre-2 oncogene) 2194803 1 1 1 0 1 0 0 0 0 0 0.87 1.00 -8538 FAM65A family with sequence similarity 65, member A 1789710 2 1 2 0 1 0 1 0 0 0 0.87 1.00 -8539 ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 1878942 1 1 1 2 0 1 0 0 0 0 0.88 1.00 -8540 MKI67 antigen identified by monoclonal antibody Ki-67 4982289 3 3 3 1 2 0 1 0 0 0 0.88 1.00 -8541 ADAR adenosine deaminase, RNA-specific 1887054 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -8542 APAF1 apoptotic peptidase activating factor 1 1952457 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -8543 SCN9A sodium channel, voltage-gated, type IX, alpha subunit 2982681 1 1 1 2 0 0 0 0 1 0 0.88 1.00 -8544 NCOA2 nuclear receptor coactivator 2 2187705 1 1 1 2 0 0 0 0 1 0 0.88 1.00 -8545 MBD5 methyl-CpG binding domain protein 5 2294175 1 1 1 0 0 0 0 1 0 0 0.88 1.00 -8546 ATAD2 ATPase family, AAA domain containing 2 2083770 1 1 1 2 0 1 0 0 0 0 0.88 1.00 -8547 SCAND3 2015325 1 1 1 0 0 0 1 0 0 0 0.88 1.00 -8548 KIAA0368 KIAA0368 2943642 1 1 1 2 0 1 0 0 0 0 0.88 1.00 -8549 CENPF centromere protein F, 350/400ka (mitosin) 4776447 3 3 3 3 0 1 2 0 0 0 0.88 1.00 -8550 NUP188 nucleoporin 188kDa 2732730 1 1 1 2 0 0 1 0 0 0 0.88 1.00 -8551 PIK3C2G phosphoinositide-3-kinase, class 2, gamma polypeptide 2244996 1 1 1 1 0 0 1 0 0 0 0.88 1.00 -8552 MYOM2 myomesin (M-protein) 2, 165kDa 2057406 1 1 1 0 0 0 0 1 0 0 0.88 1.00 -8553 MYH3 myosin, heavy chain 3, skeletal muscle, embryonic 3031353 1 1 1 3 0 0 1 0 0 0 0.88 1.00 -8554 CACNA1S calcium channel, voltage-dependent, L type, alpha 1S subunit 2936037 1 1 1 1 0 1 0 0 0 0 0.88 1.00 -8555 COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 2433600 1 1 1 0 0 1 0 0 0 0 0.88 1.00 -8556 ANK2 ankyrin 2, neuronal 6029244 4 4 4 2 2 0 2 0 0 0 0.89 1.00 -8557 GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 3139344 1 1 1 0 0 0 0 0 1 0 0.89 1.00 -8558 LY75 lymphocyte antigen 75 2641977 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -8559 A2ML1 alpha-2-macroglobulin-like 1 2284035 1 1 1 2 0 0 1 0 0 0 0.89 1.00 -8560 ATP13A3 ATPase type 13A3 1929135 1 1 1 0 0 1 0 0 0 0 0.89 1.00 -8561 DMXL2 Dmx-like 2 4661865 3 3 3 1 1 0 0 1 1 0 0.89 1.00 -8562 PLXNB1 plexin B1 2651610 1 1 1 0 0 0 1 0 0 0 0.89 1.00 -8563 HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 4151823 2 2 2 1 0 0 1 1 0 0 0.89 1.00 -8564 HUWE1 HECT, UBA and WWE domain containing 1 6786195 6 5 6 0 2 0 4 0 0 0 0.89 1.00 -8565 SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 1901757 1 1 1 1 0 1 0 0 0 0 0.89 1.00 -8566 MYO3B myosin IIIB 2112162 1 1 1 1 0 0 0 1 0 0 0.89 1.00 -8567 SGK269 2665299 1 1 1 2 0 0 1 0 0 0 0.89 1.00 -8568 C9orf84 chromosome 9 open reading frame 84 2318004 1 1 1 1 1 0 0 0 0 0 0.89 1.00 -8569 CHD8 chromodomain helicase DNA binding protein 8 3599700 2 2 2 2 0 1 1 0 0 0 0.89 1.00 -8570 TRIO triple functional domain (PTPRF interacting) 4169568 2 2 2 1 0 0 1 1 0 0 0.89 1.00 -8571 KIAA0556 KIAA0556 2437149 1 1 1 0 0 1 0 0 0 0 0.90 1.00 -8572 KIAA1217 KIAA1217 2999412 1 1 1 0 0 0 0 0 1 0 0.90 1.00 -8573 HTT huntingtin 4483908 3 2 3 4 1 0 0 1 1 0 0.90 1.00 -8574 KIF24 kinesin family member 24 2106078 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -8575 SMG1 5314881 3 3 3 2 1 0 1 0 1 0 0.90 1.00 -8576 MDN1 MDN1, midasin homolog (yeast) 8719893 6 6 6 4 0 2 2 0 2 0 0.90 1.00 -8577 STAB2 stabilin 2 3929757 2 2 2 1 1 1 0 0 0 0 0.90 1.00 -8578 GREB1 2692677 1 1 1 2 0 1 0 0 0 0 0.90 1.00 -8579 LRRC16A leucine rich repeat containing 16A 2117232 1 1 1 2 0 0 1 0 0 0 0.90 1.00 -8580 IGF2R insulin-like growth factor 2 receptor 3793374 2 2 2 3 0 1 1 0 0 0 0.90 1.00 -8581 BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae) 2881788 1 1 1 0 0 0 1 0 0 0 0.90 1.00 -8582 KIDINS220 2754024 1 1 1 0 1 0 0 0 0 0 0.90 1.00 -8583 ANKRD11 ankyrin repeat domain 11 3310203 1 1 1 0 0 0 0 0 1 0 0.91 1.00 -8584 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2012283 1 1 1 1 1 0 0 0 0 0 0.91 1.00 -8585 PARP14 poly (ADP-ribose) polymerase family, member 14 2751489 1 1 1 0 0 0 1 0 0 0 0.91 1.00 -8586 SYTL2 synaptotagmin-like 2 2718027 1 1 1 0 0 0 1 0 0 0 0.91 1.00 -8587 MYH2 myosin, heavy chain 2, skeletal muscle, adult 3030846 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -8588 FRMPD2 FERM and PDZ domain containing 2 2030028 1 1 1 1 0 1 0 0 0 0 0.91 1.00 -8589 FAT1 6828276 4 4 4 0 0 0 3 0 1 0 0.91 1.00 -8590 DEPDC5 DEP domain containing 5 2392026 1 1 1 0 0 1 0 0 0 0 0.91 1.00 -8591 ATR ataxia telangiectasia and Rad3 related 4099095 2 2 2 0 0 1 1 0 0 0 0.91 1.00 -8592 CDH23 cadherin-like 23 4836780 3 3 3 1 3 0 0 0 0 0 0.91 1.00 -8593 PTPRC protein tyrosine phosphatase, receptor type, C 2055378 1 1 1 0 1 0 0 0 0 0 0.91 1.00 -8594 UGGT1 2418390 1 1 1 0 0 0 0 1 0 0 0.91 1.00 -8595 ABCA6 ATP-binding cassette, sub-family A (ABC1), member 6 2538042 1 1 1 0 0 0 1 0 0 0 0.92 1.00 -8596 COL4A4 collagen, type IV, alpha 4 2667327 1 1 1 4 0 0 1 0 0 0 0.92 1.00 -8597 TRPM7 transient receptor potential cation channel, subfamily M, member 7 2917278 1 1 1 0 0 0 1 0 0 0 0.92 1.00 -8598 RALGAPA2 2762136 1 1 1 1 0 0 0 1 0 0 0.92 1.00 -8599 DICER1 dicer 1, ribonuclease type III 2977611 1 1 1 0 0 1 0 0 0 0 0.92 1.00 -8600 FRMPD1 FERM and PDZ domain containing 1 2432079 1 1 1 1 0 1 0 0 0 0 0.92 1.00 -8601 SPHKAP SPHK1 interactor, AKAP domain containing 2611557 1 1 1 1 0 0 0 1 0 0 0.92 1.00 -8602 MON2 MON2 homolog (S. cerevisiae) 2684058 1 1 1 0 0 0 1 0 0 0 0.93 1.00 -8603 RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 2271867 1 1 1 0 0 1 0 0 0 0 0.93 1.00 -8604 AHNAK AHNAK nucleoprotein 9025107 7 6 7 2 1 3 3 0 0 0 0.93 1.00 -8605 MYO5A myosin VA (heavy chain 12, myoxin) 2890407 1 1 1 1 0 0 0 1 0 0 0.93 1.00 -8606 FRAS1 Fraser syndrome 1 5983614 3 3 3 3 0 1 1 0 1 0 0.93 1.00 -8607 PLEKHH2 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 2331186 1 1 1 2 0 0 1 0 0 0 0.93 1.00 -8608 SFRS2IP splicing factor, arginine/serine-rich 2, interacting protein 2255136 1 1 1 0 1 0 0 0 0 0 0.93 1.00 -8609 TRPM6 transient receptor potential cation channel, subfamily M, member 6 3156075 1 1 1 1 0 0 1 0 0 0 0.93 1.00 -8610 DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 2629809 1 1 1 0 0 0 0 1 0 0 0.94 1.00 -8611 TP53BP1 tumor protein p53 binding protein 1 3065322 1 1 1 0 0 0 1 0 0 0 0.94 1.00 -8612 FAT4 FAT tumor suppressor homolog 4 (Drosophila) 7190781 4 4 4 1 0 0 2 1 1 0 0.94 1.00 -8613 PSME4 proteasome (prosome, macropain) activator subunit 4 2773290 1 1 1 0 0 1 0 0 0 0 0.94 1.00 -8614 THOC2 THO complex 2 2500524 1 1 1 1 0 0 1 0 0 0 0.94 1.00 -8615 ACAN aggrecan 3193086 1 1 1 1 0 0 0 1 0 0 0.94 1.00 -8616 MYST3 MYST histone acetyltransferase (monocytic leukemia) 3 3052140 1 1 1 0 0 1 0 0 0 0 0.94 1.00 -8617 ANAPC1 anaphase promoting complex subunit 1 2662257 1 1 1 0 0 0 0 1 0 0 0.94 1.00 -8618 HERC1 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 7293702 4 4 4 1 1 1 1 0 1 0 0.94 1.00 -8619 POLR1A polymerase (RNA) I polypeptide A, 194kDa 2681523 1 1 1 2 0 0 1 0 0 0 0.95 1.00 -8620 CLTC clathrin, heavy chain (Hc) 2605980 1 1 1 0 1 0 0 0 0 0 0.95 1.00 -8621 DENND4A DENN/MADD domain containing 4A 2852889 1 1 1 0 0 0 1 0 0 0 0.95 1.00 -8622 CEP250 centrosomal protein 250kDa 3597165 1 1 1 2 0 1 0 0 0 0 0.95 1.00 -8623 C12orf35 chromosome 12 open reading frame 35 2664792 1 1 1 0 0 1 0 0 0 0 0.95 1.00 -8624 VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) 6815601 4 4 4 1 2 0 1 1 0 0 0.96 1.00 -8625 ALMS1 Alstrom syndrome 1 6219876 3 3 3 2 1 1 1 0 0 0 0.96 1.00 -8626 F8 coagulation factor VIII, procoagulant component (hemophilia A) 3627585 1 1 1 2 0 0 1 0 0 0 0.96 1.00 -8627 C4orf21 chromosome 4 open reading frame 21 2881281 1 1 1 0 0 0 1 0 0 0 0.96 1.00 -8628 BPTF bromodomain PHD finger transcription factor 4445883 2 2 2 0 1 0 1 0 0 0 0.96 1.00 -8629 LRRK2 leucine-rich repeat kinase 2 3910491 1 1 1 2 0 0 0 1 0 0 0.96 1.00 -8630 MIA3 melanoma inhibitory activity family, member 3 2889393 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -8631 MED12L mediator complex subunit 12-like 3299049 1 1 1 3 0 1 0 0 0 0 0.96 1.00 -8632 ACACA acetyl-Coenzyme A carboxylase alpha 3768531 1 1 1 0 1 0 0 0 0 0 0.96 1.00 -8633 TET1 tet oncogene 1 3272685 1 1 1 4 0 1 0 0 0 0 0.96 1.00 -8634 FAT2 FAT tumor suppressor homolog 2 (Drosophila) 6662994 4 3 4 3 0 1 2 0 1 0 0.96 1.00 -8635 ZFC3H1 3097770 1 1 1 1 0 0 1 0 0 0 0.97 1.00 -8636 TRRAP transformation/transcription domain-associated protein 5818332 3 3 3 0 1 0 2 0 0 0 0.97 1.00 -8637 ASCC3 activating signal cointegrator 1 complex subunit 3 3484104 1 1 1 2 0 0 0 1 0 0 0.97 1.00 -8638 KNTC1 kinetochore associated 1 3391830 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -8639 NIPBL Nipped-B homolog (Drosophila) 4325217 1 1 1 0 0 1 0 0 0 0 0.98 1.00 -8640 CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) 3996681 1 1 1 0 1 0 0 0 0 0 0.99 1.00 -8641 LRP1B low density lipoprotein-related protein 1B (deleted in tumors) 7180641 3 3 3 2 1 1 1 0 0 0 0.99 1.00 -8642 RANBP2 RAN binding protein 2 4925505 1 1 1 0 0 0 1 0 0 0 0.99 1.00 -8643 PCLO piccolo (presynaptic cytomatrix protein) 7715526 3 3 3 0 2 1 0 0 0 0 0.99 1.00 -8644 A1BG alpha-1-B glycoprotein 408642 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8645 A4GALT alpha 1,4-galactosyltransferase (globotriaosylceramide synthase) 136890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8646 A4GNT alpha-1,4-N-acetylglucosaminyltransferase 522717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8647 AACS acetoacetyl-CoA synthetase 954174 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8648 AADACL3 arylacetamide deacetylase-like 3 544011 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8649 AADAT aminoadipate aminotransferase 650988 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8650 AAGAB 467961 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8651 AAMP angio-associated, migratory cell protein 643383 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8652 AANAT arylalkylamine N-acetyltransferase 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8653 AARS alanyl-tRNA synthetase 1496664 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8654 AARSD1 alanyl-tRNA synthetase domain containing 1 855816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8655 AATF apoptosis antagonizing transcription factor 829452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8656 ABCB4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 2012283 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8657 ABCB5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 1987947 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8658 ABCB9 ATP-binding cassette, sub-family B (MDR/TAP), member 9 902460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8659 ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 2392533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8660 ABCD4 ATP-binding cassette, sub-family D (ALD), member 4 939978 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8661 ABCE1 ATP-binding cassette, sub-family E (OABP), member 1 902967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8662 ABCF3 ATP-binding cassette, sub-family F (GCN20), member 3 1122498 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8663 ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1 967356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8664 ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 1028196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8665 ABCG4 ATP-binding cassette, sub-family G (WHITE), member 4 1012479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8666 ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2) 1000311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8667 ABHD1 abhydrolase domain containing 1 635778 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8668 ABHD10 abhydrolase domain containing 10 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8669 ABHD11 abhydrolase domain containing 11 453765 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8670 ABHD12B abhydrolase domain containing 12B 411684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8671 ABHD13 abhydrolase domain containing 13 516126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8672 ABHD14A abhydrolase domain containing 14A 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8673 ABHD14B abhydrolase domain containing 14B 283413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8674 ABHD3 abhydrolase domain containing 3 556179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8675 ABHD4 abhydrolase domain containing 4 522210 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8676 ABHD5 abhydrolase domain containing 5 520689 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8677 ABHD8 abhydrolase domain containing 8 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8678 ABI2 abl interactor 2 682929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8679 ABLIM1 actin binding LIM protein 1 1280682 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8680 ABLIM2 actin binding LIM protein family, member 2 490776 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8681 ABLIM3 actin binding LIM protein family, member 3 1087008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8682 ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 416247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8683 ABP1 amiloride binding protein 1 (amine oxidase (copper-containing)) 1149876 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8684 ABRA actin-binding Rho activating protein 585078 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8685 ABTB1 ankyrin repeat and BTB (POZ) domain containing 1 454272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8686 ACAD8 acyl-Coenzyme A dehydrogenase family, member 8 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8687 ACAD9 acyl-Coenzyme A dehydrogenase family, member 9 982059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8688 ACADL acyl-Coenzyme A dehydrogenase, long chain 636792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8689 ACADM acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain 655044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8690 ACADS acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain 538941 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8691 ACAP1 1023126 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8692 ACAT2 acetyl-Coenzyme A acetyltransferase 2 593697 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8693 ACBD3 acyl-Coenzyme A binding domain containing 3 673803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8694 ACBD4 acyl-Coenzyme A binding domain containing 4 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8695 ACBD6 acyl-Coenzyme A binding domain containing 6 362505 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8696 ACBD7 acyl-Coenzyme A binding domain containing 7 135369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8697 ACCN1 amiloride-sensitive cation channel 1, neuronal (degenerin) 753402 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8698 ACCN5 amiloride-sensitive cation channel 5, intestinal 789906 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8699 ACCSL 893841 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8700 ACD adrenocortical dysplasia homolog (mouse) 658593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8701 ACER1 366054 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8702 ACER2 375180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8703 ACIN1 apoptotic chromatin condensation inducer 1 2035605 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8704 ACMSD aminocarboxymuconate semialdehyde decarboxylase 532857 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8705 ACN9 ACN9 homolog (S. cerevisiae) 195702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8706 ACOT12 acyl-CoA thioesterase 12 809679 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8707 ACOT13 220545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8708 ACOT2 acyl-CoA thioesterase 2 603837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8709 ACOT6 acyl-CoA thioesterase 6 320424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8710 ACOT7 acyl-CoA thioesterase 7 601809 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8711 ACOT9 acyl-CoA thioesterase 9 703209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8712 ACOX2 acyl-Coenzyme A oxidase 2, branched chain 1065714 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8713 ACP1 acid phosphatase 1, soluble 308763 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8714 ACP2 acid phosphatase 2, lysosomal 682929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8715 ACPL2 acid phosphatase-like 2 741741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8716 ACR acrosin 285948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8717 ACRV1 acrosomal vesicle protein 1 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8718 ACSBG1 acyl-CoA synthetase bubblegum family member 1 1058109 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8719 ACSF3 acyl-CoA synthetase family member 3 687492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8720 ACSL1 acyl-CoA synthetase long-chain family member 1 1095627 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8721 ACSM2A acyl-CoA synthetase medium-chain family member 2A 905502 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8722 ACSS1 acyl-CoA synthetase short-chain family member 1 975975 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8723 ACSS2 acyl-CoA synthetase short-chain family member 2 1033773 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8724 ACTA1 actin, alpha 1, skeletal muscle 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8725 ACTC1 actin, alpha, cardiac muscle 1 587106 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8726 ACTL6A actin-like 6A 667719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8727 ACTL7A actin-like 7A 665184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8728 ACTL8 actin-like 8 552630 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8729 ACTL9 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8730 ACTN1 actinin, alpha 1 1363830 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8731 ACTR10 actin-related protein 10 homolog (S. cerevisiae) 621075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8732 ACTR1B ARP1 actin-related protein 1 homolog B, centractin beta (yeast) 533364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8733 ACTR2 ARP2 actin-related protein 2 homolog (yeast) 602316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8734 ACTR3 ARP3 actin-related protein 3 homolog (yeast) 637299 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8735 ACTR5 ARP5 actin-related protein 5 homolog (yeast) 750867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8736 ACTR8 ARP8 actin-related protein 8 homolog (yeast) 912600 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8737 ACTRT1 actin-related protein T1 575445 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8738 ACVR2B activin A receptor, type IIB 774189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8739 ACVRL1 activin A receptor type II-like 1 746304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8740 ACY3 aspartoacylase (aminocyclase) 3 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8741 ACYP2 acylphosphatase 2, muscle type 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8742 ADAL adenosine deaminase-like 423852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8743 ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 1242150 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8744 ADAM2 ADAM metallopeptidase domain 2 (fertilin beta) 1141257 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8745 ADAM20 ADAM metallopeptidase domain 20 1183845 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8746 ADAM23 ADAM metallopeptidase domain 23 1203618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8747 ADAM28 ADAM metallopeptidase domain 28 1235052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8748 ADAM32 ADAM metallopeptidase domain 32 1004874 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8749 ADAM7 ADAM metallopeptidase domain 7 1192971 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8750 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 1240629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8751 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 1370928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8752 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif, 8 910572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8753 ADAMTSL4 ADAMTS-like 4 1519986 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8754 ADAP2 539955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8755 ADARB2 adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) 479115 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8756 ADAT1 adenosine deaminase, tRNA-specific 1 783315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8757 ADAT2 adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae) 304200 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8758 ADCK2 aarF domain containing kinase 2 763542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8759 ADCY10 adenylate cyclase 10 (soluble) 2515227 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8760 ADCY2 adenylate cyclase 2 (brain) 1603134 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8761 ADCY6 adenylate cyclase 6 1773993 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -8762 ADCYAP1 adenylate cyclase activating polypeptide 1 (pituitary) 156156 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8763 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 590148 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8764 ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide 590148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8765 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 597753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8766 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 488241 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8767 ADH6 alcohol dehydrogenase 6 (class V) 592176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8768 ADI1 acireductone dioxygenase 1 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8769 ADIG adipogenin 112047 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8770 ADIPOQ adiponectin, C1Q and collagen domain containing 376701 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8771 ADIPOR1 adiponectin receptor 1 586092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8772 ADIPOR2 adiponectin receptor 2 602823 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8773 ADM adrenomedullin 221559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8774 ADNP2 ADNP homeobox 2 1722279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8775 ADORA2A adenosine A2a receptor 584064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8776 ADORA2B adenosine A2b receptor 338676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8777 ADPGK ADP-dependent glucokinase 649974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8778 ADPRHL1 ADP-ribosylhydrolase like 1 196209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8779 ADRB1 adrenergic, beta-1-, receptor 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8780 ADRB2 adrenergic, beta-2-, receptor, surface 631722 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8781 ADRBK2 adrenergic, beta, receptor kinase 2 996762 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8782 ADSS adenylosuccinate synthase 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8783 ADSSL1 adenylosuccinate synthase like 1 534885 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8784 AEBP2 AE binding protein 2 440583 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8785 AEN 429936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8786 AFAP1 actin filament associated protein 1 1117428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8787 AFAP1L1 actin filament associated protein 1-like 1 1142271 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8788 AFAP1L2 actin filament associated protein 1-like 2 1114386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8789 AFG3L2 AFG3 ATPase family gene 3-like 2 (yeast) 1146834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8790 AFM afamin 940992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8791 AFMID arylformamidase 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8792 AGA aspartylglucosaminidase 515619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8793 AGAP2 918684 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8794 AGAP4 737685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8795 AGBL4 ATP/GTP binding protein-like 4 400530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8796 AGER advanced glycosylation end product-specific receptor 653016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8797 AGFG1 795990 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8798 AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) 444132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8799 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) 179985 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8800 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8801 AGPAT9 1-acylglycerol-3-phosphate O-acyltransferase 9 617526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8802 AGR2 anterior gradient homolog 2 (Xenopus laevis) 281892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8803 AGR3 anterior gradient homolog 3 (Xenopus laevis) 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8804 AGRP agouti related protein homolog (mouse) 163254 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8805 AGTR1 angiotensin II receptor, type 1 549588 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8806 AGTR2 angiotensin II receptor, type 2 555672 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8807 AGTRAP angiotensin II receptor-associated protein 268710 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8808 AGXT2L1 alanine-glyoxylate aminotransferase 2-like 1 789399 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8809 AHCYL1 S-adenosylhomocysteine hydrolase-like 1 779259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8810 AHSA1 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 452751 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8811 AHSA2 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) 218010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8812 AHSG alpha-2-HS-glycoprotein 573924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8813 AHSP 160719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8814 AICDA activation-induced cytidine deaminase 312819 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8815 AIF1 allograft inflammatory factor 1 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8816 AIF1L 190632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8817 AIFM1 apoptosis-inducing factor, mitochondrion-associated, 1 979017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8818 AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8819 AIM2 absent in melanoma 2 533364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8820 AIMP1 500916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8821 AIMP2 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8822 AK1 adenylate kinase 1 307749 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8823 AK3 adenylate kinase 3 278343 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8824 AK3L1 adenylate kinase 3-like 1 275301 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8825 AKAP10 A kinase (PRKA) anchor protein 10 992199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8826 AKAP2 A kinase (PRKA) anchor protein 2 1370421 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8827 AKAP4 A kinase (PRKA) anchor protein 4 1312623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8828 AKAP5 A kinase (PRKA) anchor protein 5 653016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8829 AKAP7 A kinase (PRKA) anchor protein 7 575445 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8830 AKIRIN1 190125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8831 AKIRIN2 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8832 AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase) 512070 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8833 AKR1B10 aldo-keto reductase family 1, member B10 (aldose reductase) 501930 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8834 AKR1D1 aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) 515619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8835 AKR1E2 486720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8836 AKR7A2 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) 408642 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8837 AKR7L 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8838 AKT1S1 AKT1 substrate 1 (proline-rich) 129792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8839 ALAD aminolevulinate, delta-, dehydratase 507507 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8840 ALAS1 aminolevulinate, delta-, synthase 1 995241 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8841 ALB albumin 956202 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8842 ALDH16A1 aldehyde dehydrogenase 16 family, member A1 766584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8843 ALDH1A3 aldehyde dehydrogenase 1 family, member A3 714870 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8844 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 624624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8845 ALDH3A1 aldehyde dehydrogenase 3 family, memberA1 565305 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8846 ALDH3A2 aldehyde dehydrogenase 3 family, member A2 724503 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8847 ALDH4A1 aldehyde dehydrogenase 4 family, member A1 405093 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8848 ALDH6A1 aldehyde dehydrogenase 6 family, member A1 836043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8849 ALDH7A1 aldehyde dehydrogenase 7 family, member A1 758472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8850 ALDOC aldolase C, fructose-bisphosphate 571389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8851 ALG12 asparagine-linked glycosylation 12 homolog (S. cerevisiae, alpha-1,6-mannosyltransferase) 415233 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8852 ALG14 asparagine-linked glycosylation 14 homolog (S. cerevisiae) 338169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8853 ALG3 asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase) 565812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8854 ALG5 asparagine-linked glycosylation 5 homolog (S. cerevisiae, dolichyl-phosphate beta-glucosyltransferase) 495339 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8855 ALG8 asparagine-linked glycosylation 8 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) 777738 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8856 ALKBH2 alkB, alkylation repair homolog 2 (E. coli) 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8857 ALKBH3 alkB, alkylation repair homolog 3 (E. coli) 454779 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8858 ALKBH4 alkB, alkylation repair homolog 4 (E. coli) 319917 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8859 ALKBH6 alkB, alkylation repair homolog 6 (E. coli) 284427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8860 ALLC allantoicase 444132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8861 ALOX12B arachidonate 12-lipoxygenase, 12R type 711828 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8862 ALOX15 arachidonate 15-lipoxygenase 899418 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8863 ALOX15B arachidonate 15-lipoxygenase, type B 867477 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8864 ALOX5 arachidonate 5-lipoxygenase 770640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8865 ALOX5AP arachidonate 5-lipoxygenase-activating protein 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8866 ALS2 amyotrophic lateral sclerosis 2 (juvenile) 2590263 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8867 ALS2CR12 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 706758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8868 ALS2CR4 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 606879 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8869 ALX1 ALX homeobox 1 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8870 ALX3 aristaless-like homeobox 3 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8871 ALX4 aristaless-like homeobox 4 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8872 AMAC1 acyl-malonyl condensing enzyme 1 517647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8873 AMAC1L2 acyl-malonyl condensing enzyme 1-like 2 517647 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8874 AMAC1L3 acyl-malonyl condensing enzyme 1-like 3 507507 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8875 AMFR autocrine motility factor receptor 640848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8876 AMIGO3 adhesion molecule with Ig-like domain 3 755937 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8877 AMMECR1L AMME chromosomal region gene 1-like 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8878 AMN1 antagonist of mitotic exit network 1 homolog (S. cerevisiae) 386841 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8879 AMOTL1 angiomotin like 1 1358760 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8880 AMOTL2 angiomotin like 2 1147341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8881 AMPD2 adenosine monophosphate deaminase 2 (isoform L) 1302483 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8882 AMPD3 adenosine monophosphate deaminase (isoform E) 1209195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8883 AMTN amelotin 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8884 AMY2B amylase, alpha 2B (pancreatic) 799032 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8885 ANAPC10 anaphase promoting complex subunit 10 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8886 ANAPC11 APC11 anaphase promoting complex subunit 11 homolog (yeast) 93288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8887 ANAPC13 anaphase promoting complex subunit 13 118131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8888 ANAPC16 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8889 ANAPC2 anaphase promoting complex subunit 2 709293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8890 ANAPC4 anaphase promoting complex subunit 4 1219842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8891 ANG angiogenin, ribonuclease, RNase A family, 5 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8892 ANGEL2 angel homolog 2 (Drosophila) 847197 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8893 ANGPT1 angiopoietin 1 777231 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8894 ANGPT2 angiopoietin 2 774189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8895 ANGPTL1 angiopoietin-like 1 756444 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8896 ANGPTL2 angiopoietin-like 2 759486 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8897 ANGPTL4 angiopoietin-like 4 461370 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8898 ANGPTL7 angiopoietin-like 7 537927 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8899 ANKDD1A ankyrin repeat and death domain containing 1A 648453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8900 ANKFN1 ankyrin-repeat and fibronectin type III domain containing 1 1196520 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8901 ANKHD1 ankyrin repeat and KH domain containing 1 3833427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8902 ANKIB1 ankyrin repeat and IBR domain containing 1 1687803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8903 ANKLE2 ankyrin repeat and LEM domain containing 2 902967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8904 ANKMY2 ankyrin repeat and MYND domain containing 2 692562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8905 ANKRA2 ankyrin repeat, family A (RFXANK-like), 2 493818 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8906 ANKRD1 ankyrin repeat domain 1 (cardiac muscle) 504972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8907 ANKRD10 ankyrin repeat domain 10 520182 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8908 ANKRD13A ankyrin repeat domain 13A 878631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8909 ANKRD13B ankyrin repeat domain 13B 363519 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8910 ANKRD13D ankyrin repeat domain 13 family, member D 440076 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8911 ANKRD2 ankyrin repeat domain 2 (stretch responsive muscle) 260598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8912 ANKRD20A1 ankyrin repeat domain 20 family, member A1 526266 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8913 ANKRD22 ankyrin repeat domain 22 304200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8914 ANKRD23 ankyrin repeat domain 23 391404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8915 ANKRD27 ankyrin repeat domain 27 (VPS9 domain) 1545843 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8916 ANKRD29 ankyrin repeat domain 29 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8917 ANKRD33 ankyrin repeat domain 33 732108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8918 ANKRD36B ankyrin repeat domain 36B 1202097 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8919 ANKRD37 ankyrin repeat domain 37 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8920 ANKRD39 ankyrin repeat domain 39 222573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8921 ANKRD44 ankyrin repeat domain 44 1450020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8922 ANKRD45 ankyrin repeat domain 45 416247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8923 ANKRD46 ankyrin repeat domain 46 354393 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8924 ANKRD49 ankyrin repeat domain 49 369096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8925 ANKRD5 ankyrin repeat domain 5 1200069 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8926 ANKRD54 ankyrin repeat domain 54 246909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8927 ANKRD55 ankyrin repeat domain 55 957723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8928 ANKRD56 ankyrin repeat domain 56 627666 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8929 ANKRD57 ankyrin repeat domain 57 327522 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8930 ANKS3 ankyrin repeat and sterile alpha motif domain containing 3 709800 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8931 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 1146327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8932 ANO1 1057602 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8933 ANO4 1451541 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8934 ANO6 1388673 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8935 ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8936 ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B 322959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8937 ANP32D acidic (leucine-rich) nuclear phosphoprotein 32 family, member D 202800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8938 ANTXR2 anthrax toxin receptor 2 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8939 ANXA1 annexin A1 552123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8940 ANXA10 annexin A10 517647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8941 ANXA2 annexin A2 537927 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8942 ANXA5 annexin A5 505986 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8943 ANXA7 annexin A7 770133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8944 ANXA9 annexin A9 550602 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8945 AOAH acyloxyacyl hydrolase (neutrophil) 969384 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -8946 AP1AR 436527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8947 AP1M1 adaptor-related protein complex 1, mu 1 subunit 523224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8948 AP1S1 adaptor-related protein complex 1, sigma 1 subunit 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8949 AP1S2 adaptor-related protein complex 1, sigma 2 subunit 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8950 AP2B1 adaptor-related protein complex 2, beta 1 subunit 1469793 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8951 AP2S1 adaptor-related protein complex 2, sigma 1 subunit 221559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8952 AP3B2 adaptor-related protein complex 3, beta 2 subunit 1464723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8953 AP3M2 adaptor-related protein complex 3, mu 2 subunit 653523 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8954 AP3S1 adaptor-related protein complex 3, sigma 1 subunit 270231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8955 AP3S2 adaptor-related protein complex 3, sigma 2 subunit 270231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8956 AP4B1 adaptor-related protein complex 4, beta 1 subunit 1145820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8957 AP4S1 adaptor-related protein complex 4, sigma 1 subunit 253500 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8958 APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 1062165 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8959 APBB1IP amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein 803595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8960 APBB3 amyloid beta (A4) precursor protein-binding, family B, member 3 775710 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8961 APCDD1L adenomatosis polyposis coli down-regulated 1-like 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8962 APCS amyloid P component, serum 344760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8963 APEH N-acylaminoacyl-peptide hydrolase 1048476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8964 APH1A anterior pharynx defective 1 homolog A (C. elegans) 330057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8965 APH1B anterior pharynx defective 1 homolog B (C. elegans) 345267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8966 APIP APAF1 interacting protein 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8967 APITD1 apoptosis-inducing, TAF9-like domain 1 306735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8968 APLF 748332 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8969 APOA1BP apolipoprotein A-I binding protein 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8970 APOA2 apolipoprotein A-II 159705 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8971 APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 370617 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8972 APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A 226629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8973 APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8974 APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D (putative) 602823 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8975 APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 612456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8976 APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G 591162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8977 APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H 287976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8978 APOC1 apolipoprotein C-I 133848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8979 APOC2 apolipoprotein C-II 161226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8980 APOC4 apolipoprotein C-IV 172887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8981 APOD apolipoprotein D 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8982 APOE apolipoprotein E 192660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8983 APOL3 apolipoprotein L, 3 619047 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8984 APOL4 apolipoprotein L, 4 537420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8985 APOL6 apolipoprotein L, 6 527280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8986 APOM apolipoprotein M 299637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8987 APOO apolipoprotein O 312312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8988 APOOL apolipoprotein O-like 347295 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8989 APPBP2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 877617 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8990 APPL1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 1064193 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8991 AQP1 aquaporin 1 (Colton blood group) 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8992 AQP11 aquaporin 11 286962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8993 AQP12A aquaporin 12A 257556 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8994 AQP3 aquaporin 3 (Gill blood group) 312312 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8995 AQP6 aquaporin 6, kidney specific 438555 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -8996 AQP8 aquaporin 8 410670 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8997 AQP9 aquaporin 9 462384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -8998 AQPEP 1532661 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -8999 ARAP2 2658201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9000 ARC activity-regulated cytoskeleton-associated protein 211926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9001 AREG amphiregulin (schwannoma-derived growth factor) 400530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9002 ARF3 ADP-ribosylation factor 3 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9003 ARF4 ADP-ribosylation factor 4 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9004 ARF5 ADP-ribosylation factor 5 235248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9005 ARF6 ADP-ribosylation factor 6 269724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9006 ARFGAP2 ADP-ribosylation factor GTPase activating protein 2 753909 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9007 ARFIP2 ADP-ribosylation factor interacting protein 2 (arfaptin 2) 534378 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9008 ARGFX arginine-fifty homeobox 427401 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9009 ARGLU1 arginine and glutamate rich 1 376194 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9010 ARHGAP1 Rho GTPase activating protein 1 632736 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9011 ARHGAP10 Rho GTPase activating protein 10 1163565 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9012 ARHGAP11B Rho GTPase activating protein 11B 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9013 ARHGAP18 Rho GTPase activating protein 18 954174 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9014 ARHGAP19 Rho GTPase activating protein 19 777231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9015 ARHGAP22 Rho GTPase activating protein 22 498381 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9016 ARHGAP26 Rho GTPase activating protein 26 1264458 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9017 ARHGAP27 Rho GTPase activating protein 27 663663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9018 ARHGAP30 Rho GTPase activating protein 30 1591980 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9019 ARHGAP33 1592487 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9020 ARHGAP4 Rho GTPase activating protein 4 762021 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9021 ARHGAP8 Rho GTPase activating protein 8 541476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9022 ARHGAP9 Rho GTPase activating protein 9 965328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9023 ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha 245895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9024 ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 1713153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9025 ARHGEF19 Rho guanine nucleotide exchange factor (GEF) 19 822861 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9026 ARHGEF35 611949 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9027 ARHGEF37 1050504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9028 ARHGEF38 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9029 ARHGEF5 Rho guanine nucleotide exchange factor (GEF) 5 1631019 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9030 ARID3A AT rich interactive domain 3A (BRIGHT-like) 365547 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9031 ARIH1 ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) 684957 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9032 ARIH2 ariadne homolog 2 (Drosophila) 779766 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9033 ARL1 ADP-ribosylation factor-like 1 274794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9034 ARL10 ADP-ribosylation factor-like 10 202293 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9035 ARL13A ADP-ribosylation factor-like 13A 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9036 ARL13B ADP-ribosylation factor-like 13B 610428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9037 ARL14 ADP-ribosylation factor-like 14 295581 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9038 ARL15 ADP-ribosylation factor-like 15 183534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9039 ARL2 ADP-ribosylation factor-like 2 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9040 ARL2BP ADP-ribosylation factor-like 2 binding protein 240318 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9041 ARL3 ADP-ribosylation factor-like 3 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9042 ARL4A ADP-ribosylation factor-like 4A 307749 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9043 ARL4C ADP-ribosylation factor-like 4C 276315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9044 ARL4D ADP-ribosylation factor-like 4D 196716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9045 ARL5B ADP-ribosylation factor-like 5B 260598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9046 ARL6 ADP-ribosylation factor-like 6 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9047 ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 302172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9048 ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9049 ARL8A ADP-ribosylation factor-like 8A 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9050 ARL9 ADP-ribosylation factor-like 9 194688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9051 ARMC1 armadillo repeat containing 1 442611 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9052 ARMC10 armadillo repeat containing 10 409656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9053 ARMC2 armadillo repeat containing 2 1354704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9054 ARMC3 armadillo repeat containing 3 1364337 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9055 ARMC4 armadillo repeat containing 4 1626963 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9056 ARMC9 armadillo repeat containing 9 1053546 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9057 ARMCX3 armadillo repeat containing, X-linked 3 580008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9058 ARMCX6 armadillo repeat containing, X-linked 6 352365 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9059 ARMS2 age-related maculopathy susceptibility 2 152607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9060 ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 1083459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9061 ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2 985608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9062 ARPC3 actin related protein 2/3 complex, subunit 3, 21kDa 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9063 ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa 265668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9064 ARPC5 actin related protein 2/3 complex, subunit 5, 16kDa 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9065 ARPC5L actin related protein 2/3 complex, subunit 5-like 164775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9066 ARPM1 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9067 ARPP19 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9068 ARRB2 arrestin, beta 2 603330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9069 ARRDC1 arrestin domain containing 1 608400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9070 ARRDC2 arrestin domain containing 2 468975 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9071 ARRDC5 arrestin domain containing 5 527787 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9072 ARSD arylsulfatase D 908544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9073 ARSG arylsulfatase G 822354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9074 ARSI arylsulfatase family, member I 686985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9075 ARSJ arylsulfatase family, member J 916656 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9076 ART1 ADP-ribosyltransferase 1 468468 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9077 ART3 ADP-ribosyltransferase 3 596739 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9078 ART5 ADP-ribosyltransferase 5 402558 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9079 ARV1 ARV1 homolog (S. cerevisiae) 414726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9080 ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1 556686 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9081 ASAH2 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 395460 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9082 ASAH2B N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B 120159 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9083 ASAM 568854 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9084 ASAP3 1067742 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9085 ASB11 ankyrin repeat and SOCS box-containing 11 568854 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9086 ASB12 ankyrin repeat and SOCS box-containing 12 475566 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9087 ASB13 ankyrin repeat and SOCS box-containing 13 315354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9088 ASB14 ankyrin repeat and SOCS box-containing 14 466947 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9089 ASB2 ankyrin repeat and SOCS box-containing 2 622089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9090 ASB3 ankyrin repeat and SOCS box-containing 3 807651 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9091 ASB4 ankyrin repeat and SOCS box-containing 4 696111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9092 ASCC2 activating signal cointegrator 1 complex subunit 2 1115907 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9093 ASCL1 achaete-scute complex homolog 1 (Drosophila) 227643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9094 ASF1A ASF1 anti-silencing function 1 homolog A (S. cerevisiae) 263640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9095 ASF1B ASF1 anti-silencing function 1 homolog B (S. cerevisiae) 316875 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9096 ASGR1 asialoglycoprotein receptor 1 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9097 ASGR2 asialoglycoprotein receptor 2 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9098 ASIP agouti signaling protein, nonagouti homolog (mouse) 116610 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9099 ASMT acetylserotonin O-methyltransferase 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9100 ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) 513591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9101 ASNS asparagine synthetase 877110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9102 ASPHD1 aspartate beta-hydroxylase domain containing 1 600288 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9103 ASPHD2 aspartate beta-hydroxylase domain containing 2 552123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9104 ASPN asporin 593697 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9105 ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1 399516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9106 ASRGL1 asparaginase like 1 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9107 ATAD1 ATPase family, AAA domain containing 1 568854 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9108 ATAD3A ATPase family, AAA domain containing 3A 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9109 ATE1 arginyltransferase 1 825396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9110 ATF1 activating transcription factor 1 425880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9111 ATF2 activating transcription factor 2 793962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9112 ATF6B 1089543 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9113 ATF7 activating transcription factor 7 775203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9114 ATF7IP2 activating transcription factor 7 interacting protein 2 1059123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9115 ATG10 ATG10 autophagy related 10 homolog (S. cerevisiae) 348309 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9116 ATG12 ATG12 autophagy related 12 homolog (S. cerevisiae) 222573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9117 ATG3 ATG3 autophagy related 3 homolog (S. cerevisiae) 466440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9118 ATG4C ATG4 autophagy related 4 homolog C (S. cerevisiae) 718419 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9119 ATG5 ATG5 autophagy related 5 homolog (S. cerevisiae) 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9120 ATL1 878631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9121 ATL2 846690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9122 ATL3 825396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9123 ATOH8 atonal homolog 8 (Drosophila) 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9124 ATOX1 ATX1 antioxidant protein 1 homolog (yeast) 103935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9125 ATP11B ATPase, class VI, type 11B 1836861 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9126 ATP1B2 ATPase, Na+/K+ transporting, beta 2 polypeptide 397995 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9127 ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9128 ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 1574235 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9129 ATP2A3 ATPase, Ca++ transporting, ubiquitous 1071291 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9130 ATP4B ATPase, H+/K+ exchanging, beta polypeptide 327522 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9131 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 64896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9132 ATP5G1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9133 ATP5G2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) 275301 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9134 ATP5G3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) 205842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9135 ATP5H ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9136 ATP5I ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E 51207 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9137 ATP5J ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9138 ATP5J2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 160719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9139 ATP5L ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G 138411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9140 ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein) 319410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9141 ATP5S ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B) 364026 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9142 ATP5SL ATP5S-like 404586 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9143 ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 645918 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9144 ATP6AP1L 350337 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9145 ATP6AP2 ATPase, H+ transporting, lysosomal accessory protein 2 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9146 ATP6V0A1 ATPase, H+ transporting, lysosomal V0 subunit a1 1327833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9147 ATP6V0C ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9148 ATP6V0D1 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 551616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9149 ATP6V1A ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 968370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9150 ATP6V1B1 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 (Renal tubular acidosis with deafness) 774189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9151 ATP6V1C2 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 632736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9152 ATP6V1D ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D 395460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9153 ATP6V1E1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 346281 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9154 ATP6V1E2 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 347295 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9155 ATP6V1F ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9156 ATP6V1G1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 125229 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9157 ATP6V1G3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9158 ATP8A2 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 1781091 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9159 ATP9B ATPase, class II, type 9B 1631526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9160 ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 370110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9161 ATRIP ATR interacting protein 1103739 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9162 ATXN3 ataxin 3 567333 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9163 ATXN7L2 ataxin 7-like 2 1055574 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9164 ATXN7L3 ataxin 7-like 3 564291 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9165 AUH AU RNA binding protein/enoyl-Coenzyme A hydratase 402558 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9166 AURKB aurora kinase B 506493 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9167 AVEN apoptosis, caspase activation inhibitor 426894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9168 AVL9 970398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9169 AVPR1A arginine vasopressin receptor 1A 582543 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9170 AVPR2 arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) 568347 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9171 AXIN2 axin 2 (conductin, axil) 1197534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9172 AZI1 5-azacytidine induced 1 510549 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9173 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 727545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9174 B3GALT2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 645411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9175 B3GALTL beta 1,3-galactosyltransferase-like 751881 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9176 B3GAT1 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) 245895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9177 B3GAT2 beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9178 B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 578487 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9179 B3GNTL1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 255528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9180 B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 716898 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9181 B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 793962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9182 B4GALT2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 494325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9183 B4GALT4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 536913 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9184 B4GALT5 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 549588 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9185 B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) 466947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9186 B9D1 B9 protein domain 1 292032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9187 BAALC brain and acute leukemia, cytoplasmic 145002 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9188 BACE2 beta-site APP-cleaving enzyme 2 593697 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9189 BAG1 BCL2-associated athanogene 458835 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9190 BAG2 BCL2-associated athanogene 2 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9191 BAG5 BCL2-associated athanogene 5 747825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9192 BAGE B melanoma antigen 63882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9193 BAGE2 B melanoma antigen family, member 2 62868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9194 BAGE3 B melanoma antigen family, member 3 62868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9195 BAGE4 B melanoma antigen family, member 4 63882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9196 BAGE5 B melanoma antigen family, member 5 63882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9197 BAMBI BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) 362505 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9198 BANF1 barrier to autointegration factor 1 140946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9199 BANF2 barrier to autointegration factor 2 143988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9200 BANP BTG3 associated nuclear protein 360477 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9201 BARD1 BRCA1 associated RING domain 1 1123512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9202 BARHL1 BarH-like homeobox 1 467454 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9203 BARHL2 BarH-like homeobox 2 361491 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9204 BASP1 brain abundant, membrane attached signal protein 1 220038 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9205 BAT1 HLA-B associated transcript 1 672789 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9206 BAT3 HLA-B associated transcript 3 1739010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9207 BAT4 HLA-B associated transcript 4 547053 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9208 BATF basic leucine zipper transcription factor, ATF-like 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9209 BATF2 basic leucine zipper transcription factor, ATF-like 2 390390 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9210 BATF3 basic leucine zipper transcription factor, ATF-like 3 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9211 BAX BCL2-associated X protein 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9212 BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 604344 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9213 BBS1 Bardet-Biedl syndrome 1 910572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9214 BBS10 Bardet-Biedl syndrome 10 1057095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9215 BBS12 Bardet-Biedl syndrome 12 1083459 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9216 BBS4 Bardet-Biedl syndrome 4 809172 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9217 BCAM basal cell adhesion molecule (Lutheran blood group) 849225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9218 BCAP29 B-cell receptor-associated protein 29 547053 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9219 BCAP31 B-cell receptor-associated protein 31 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9220 BCAS2 breast carcinoma amplified sequence 2 357942 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9221 BCAS4 breast carcinoma amplified sequence 4 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9222 BCCIP BRCA2 and CDKN1A interacting protein 610935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9223 BCDIN3D BCDIN3 domain containing 449709 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9224 BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide (maple syrup urine disease) 516633 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9225 BCL10 B-cell CLL/lymphoma 10 359463 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9226 BCL2 B-cell CLL/lymphoma 2 193167 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9227 BCL2A1 BCL2-related protein A1 302172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9228 BCL2L1 BCL2-like 1 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9229 BCL2L10 BCL2-like 10 (apoptosis facilitator) 80613 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9230 BCL2L14 BCL2-like 14 (apoptosis facilitator) 552123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9231 BCL2L15 BCL2-like 15 257556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9232 BCL2L2 BCL2-like 2 292539 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9233 BCL3 B-cell CLL/lymphoma 3 387855 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9234 BCL7A B-cell CLL/lymphoma 7A 316368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9235 BCL7C B-cell CLL/lymphoma 7C 331578 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9236 BCO2 beta-carotene oxygenase 2 906516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9237 BCS1L BCS1-like (yeast) 653016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9238 BDH1 3-hydroxybutyrate dehydrogenase, type 1 535392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9239 BDH2 3-hydroxybutyrate dehydrogenase, type 2 310284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9240 BDKRB2 bradykinin receptor B2 600288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9241 BECN1 beclin 1, autophagy related 665184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9242 BEND6 436020 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9243 BEST4 bestrophin 4 424866 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9244 BET1 blocked early in transport 1 homolog (S. cerevisiae) 189111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9245 BET1L blocked early in transport 1 homolog (S. cerevisiae)-like 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9246 BEX1 brain expressed, X-linked 1 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9247 BEX2 brain expressed X-linked 2 200772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9248 BEX4 BEX family member 4 186069 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9249 BEX5 BEX family member 5 172380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9250 BFSP2 beaded filament structural protein 2, phakinin 618033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9251 BGLAP bone gamma-carboxyglutamate (gla) protein (osteocalcin) 148044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9252 BHLHB9 basic helix-loop-helix domain containing, class B, 9 835536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9253 BICC1 bicaudal C homolog 1 (Drosophila) 1427205 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9254 BIK BCL2-interacting killer (apoptosis-inducing) 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9255 BIN3 bridging integrator 3 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9256 BIRC2 baculoviral IAP repeat-containing 2 957723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9257 BIRC3 baculoviral IAP repeat-containing 3 936429 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9258 BIRC5 baculoviral IAP repeat-containing 5 (survivin) 301158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9259 BIVM basic, immunoglobulin-like variable motif containing 795483 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9260 BLID BH3-like motif containing, cell death inducer 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9261 BLMH bleomycin hydrolase 628173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9262 BLVRA biliverdin reductase A 465933 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9263 BLVRB biliverdin reductase B (flavin reductase (NADPH)) 196716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9264 BMF Bcl2 modifying factor 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9265 BMP15 bone morphogenetic protein 15 501423 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9266 BMP7 bone morphogenetic protein 7 (osteogenic protein 1) 457314 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9267 BMP8A bone morphogenetic protein 8a 192153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9268 BMPR1A bone morphogenetic protein receptor, type IA 833001 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9269 BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 427908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9270 BNIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 493818 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9271 BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 283413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9272 BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9273 BNIPL BCL2/adenovirus E1B 19kD interacting protein like 564798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9274 BOC Boc homolog (mouse) 1674114 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9275 BOD1 183027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9276 BOLA1 bolA homolog 1 (E. coli) 158184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9277 BOLA3 bolA homolog 3 (E. coli) 178971 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9278 BOLL bol, boule-like (Drosophila) 459849 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9279 BPGM 2,3-bisphosphoglycerate mutase 399516 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9280 BPHL biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9281 BPIL1 bactericidal/permeability-increasing protein-like 1 671268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9282 BPIL2 bactericidal/permeability-increasing protein-like 2 803088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9283 BPIL3 bactericidal/permeability-increasing protein-like 3 720447 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9284 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 486213 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9285 BRAP BRCA1 associated protein 882687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9286 BRD1 bromodomain containing 1 1160016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9287 BRD2 bromodomain containing 2 1244178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9288 BRD3 bromodomain containing 3 507000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9289 BRD4 bromodomain containing 4 1346085 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9290 BRD9 bromodomain containing 9 733122 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9291 BRI3 brain protein I3 122694 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9292 BRI3BP BRI3 binding protein 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9293 BRMS1L breast cancer metastasis-suppressor 1-like 439062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9294 BRP44 brain protein 44 147537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9295 BRPF1 bromodomain and PHD finger containing, 1 1845987 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9296 BSPRY B-box and SPRY domain containing 517647 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9297 BST1 bone marrow stromal cell antigen 1 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9298 BTBD1 BTB (POZ) domain containing 1 545532 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9299 BTBD16 BTB (POZ) domain containing 16 801567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9300 BTBD6 BTB (POZ) domain containing 6 558714 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9301 BTBD8 BTB (POZ) domain containing 8 545025 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9302 BTF3 basic transcription factor 3 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9303 BTG1 B-cell translocation gene 1, anti-proliferative 188604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9304 BTG2 BTG family, member 2 176943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9305 BTG3 BTG family, member 3 392925 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9306 BTG4 B-cell translocation gene 4 350844 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9307 BTLA B and T lymphocyte associated 451230 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9308 BTN3A2 butyrophilin, subfamily 3, member A2 523731 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9309 BTRC beta-transducin repeat containing 923754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9310 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast) 1687296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9311 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 1625442 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9312 BUB3 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 521703 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9313 BUD13 BUD13 homolog (S. cerevisiae) 888771 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9314 BUD31 BUD31 homolog (S. cerevisiae) 228657 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9315 BYSL bystin-like 661128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9316 BZW2 basic leucine zipper and W2 domains 2 648453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9317 C10orf10 chromosome 10 open reading frame 10 208377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9318 C10orf11 chromosome 10 open reading frame 11 314847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9319 C10orf111 chromosome 10 open reading frame 111 239304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9320 C10orf113 chromosome 10 open reading frame 113 259077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9321 C10orf114 chromosome 10 open reading frame 114 112554 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9322 C10orf116 chromosome 10 open reading frame 116 57798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9323 C10orf118 chromosome 10 open reading frame 118 1397799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9324 C10orf120 chromosome 10 open reading frame 120 517140 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -9325 C10orf27 chromosome 10 open reading frame 27 544518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9326 C10orf35 chromosome 10 open reading frame 35 159198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9327 C10orf54 chromosome 10 open reading frame 54 215475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9328 C10orf55 chromosome 10 open reading frame 55 105456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9329 C10orf57 chromosome 10 open reading frame 57 150579 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9330 C10orf58 chromosome 10 open reading frame 58 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9331 C10orf62 chromosome 10 open reading frame 62 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9332 C10orf67 chromosome 10 open reading frame 67 202800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9333 C10orf76 chromosome 10 open reading frame 76 1100190 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9334 C10orf78 chromosome 10 open reading frame 78 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9335 C10orf82 chromosome 10 open reading frame 82 243867 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9336 C10orf84 chromosome 10 open reading frame 84 370110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9337 C10orf90 chromosome 10 open reading frame 90 1082952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9338 C10orf91 chromosome 10 open reading frame 91 138918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9339 C10orf93 chromosome 10 open reading frame 93 457314 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9340 C10orf99 chromosome 10 open reading frame 99 130806 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9341 C11orf10 chromosome 11 open reading frame 10 127257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9342 C11orf17 chromosome 11 open reading frame 17 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9343 C11orf2 chromosome 11 open reading frame2 489762 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9344 C11orf24 chromosome 11 open reading frame 24 245895 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9345 C11orf31 chromosome 11 open reading frame 31 96837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9346 C11orf42 chromosome 11 open reading frame 42 514098 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9347 C11orf46 chromosome 11 open reading frame 46 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9348 C11orf48 chromosome 11 open reading frame 48 348309 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9349 C11orf51 chromosome 11 open reading frame 51 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9350 C11orf53 chromosome 11 open reading frame 53 366561 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9351 C11orf54 chromosome 11 open reading frame 54 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9352 C11orf57 chromosome 11 open reading frame 57 457314 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9353 C11orf58 chromosome 11 open reading frame 58 281385 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9354 C11orf59 chromosome 11 open reading frame 59 164268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9355 C11orf61 chromosome 11 open reading frame 61 520182 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9356 C11orf65 chromosome 11 open reading frame 65 493818 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9357 C11orf67 chromosome 11 open reading frame 67 193167 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9358 C11orf68 chromosome 11 open reading frame 68 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9359 C11orf70 chromosome 11 open reading frame 70 361998 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9360 C11orf71 chromosome 11 open reading frame 71 134862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9361 C11orf73 chromosome 11 open reading frame 73 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9362 C11orf74 chromosome 11 open reading frame 74 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9363 C11orf75 chromosome 11 open reading frame 75 93288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9364 C11orf80 chromosome 11 open reading frame 80 613977 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9365 C11orf82 chromosome 11 open reading frame 82 1527591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9366 C11orf83 111540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9367 C11orf88 270738 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9368 C11orf9 chromosome 11 open reading frame 9 1157481 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9369 C11orf92 179478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9370 C11orf94 103428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9371 C12orf10 chromosome 12 open reading frame 10 587613 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9372 C12orf12 chromosome 12 open reading frame 12 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9373 C12orf23 chromosome 12 open reading frame 23 182013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9374 C12orf24 chromosome 12 open reading frame 24 356421 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9375 C12orf26 chromosome 12 open reading frame 26 926289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9376 C12orf29 chromosome 12 open reading frame 29 462384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9377 C12orf34 chromosome 12 open reading frame 34 264147 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9378 C12orf41 chromosome 12 open reading frame 41 709800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9379 C12orf43 chromosome 12 open reading frame 43 364026 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9380 C12orf45 chromosome 12 open reading frame 45 230685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9381 C12orf49 chromosome 12 open reading frame 49 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9382 C12orf5 chromosome 12 open reading frame 5 424359 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9383 C12orf52 chromosome 12 open reading frame 52 273273 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9384 C12orf53 chromosome 12 open reading frame 53 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9385 C12orf54 chromosome 12 open reading frame 54 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9386 C12orf56 chromosome 12 open reading frame 56 595725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9387 C12orf59 chromosome 12 open reading frame 59 257556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9388 C12orf60 chromosome 12 open reading frame 60 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9389 C12orf62 chromosome 12 open reading frame 62 90246 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9390 C12orf65 chromosome 12 open reading frame 65 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9391 C12orf66 684450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9392 C12orf69 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9393 C12orf72 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9394 C12orf74 302172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9395 C12orf76 123708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9396 C13orf1 chromosome 13 open reading frame 1 254007 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9397 C13orf15 chromosome 13 open reading frame 15 96837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9398 C13orf16 chromosome 13 open reading frame 16 241332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9399 C13orf18 chromosome 13 open reading frame 18 1017549 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9400 C13orf27 chromosome 13 open reading frame 27 356928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9401 C13orf28 chromosome 13 open reading frame 28 277329 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9402 C13orf30 chromosome 13 open reading frame 30 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9403 C13orf31 chromosome 13 open reading frame 31 665691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9404 C13orf36 166296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9405 C13orf37 90246 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9406 C14orf1 chromosome 14 open reading frame 1 222573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9407 C14orf101 chromosome 14 open reading frame 101 1026168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9408 C14orf104 chromosome 14 open reading frame 104 530322 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9409 C14orf109 chromosome 14 open reading frame 109 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9410 C14orf118 chromosome 14 open reading frame 118 775203 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9411 C14orf119 chromosome 14 open reading frame 119 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9412 C14orf126 chromosome 14 open reading frame 126 204828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9413 C14orf129 chromosome 14 open reading frame 129 216996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9414 C14orf135 chromosome 14 open reading frame 135 1446471 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9415 C14orf138 chromosome 14 open reading frame 138 227643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9416 C14orf142 chromosome 14 open reading frame 142 157677 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9417 C14orf143 chromosome 14 open reading frame 143 261105 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9418 C14orf147 chromosome 14 open reading frame 147 54756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9419 C14orf148 chromosome 14 open reading frame 148 595725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9420 C14orf149 chromosome 14 open reading frame 149 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9421 C14orf153 chromosome 14 open reading frame 153 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9422 C14orf156 chromosome 14 open reading frame 156 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9423 C14orf159 chromosome 14 open reading frame 159 970398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9424 C14orf166 chromosome 14 open reading frame 166 355914 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9425 C14orf169 chromosome 14 open reading frame 169 651495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9426 C14orf177 chromosome 14 open reading frame 177 195702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9427 C14orf178 chromosome 14 open reading frame 178 185562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9428 C14orf179 chromosome 14 open reading frame 179 386334 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9429 C14orf181 chromosome 14 open reading frame 181 248937 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9430 C14orf182 170352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9431 C14orf183 371631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9432 C14orf184 114075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9433 C14orf2 chromosome 14 open reading frame 2 95823 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9434 C14orf28 chromosome 14 open reading frame 28 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9435 C14orf4 chromosome 14 open reading frame 4 423852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9436 C14orf45 chromosome 14 open reading frame 45 819312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9437 C14orf79 chromosome 14 open reading frame 79 505986 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9438 C14orf93 chromosome 14 open reading frame 93 831480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9439 C15orf23 chromosome 15 open reading frame 23 488241 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9440 C15orf24 chromosome 15 open reading frame 24 379743 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9441 C15orf26 chromosome 15 open reading frame 26 436527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9442 C15orf27 chromosome 15 open reading frame 27 787371 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9443 C15orf29 chromosome 15 open reading frame 29 476073 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9444 C15orf38 chromosome 15 open reading frame 38 308763 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9445 C15orf40 chromosome 15 open reading frame 40 279357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9446 C15orf41 chromosome 15 open reading frame 41 415740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9447 C15orf43 chromosome 15 open reading frame 43 350337 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9448 C15orf44 chromosome 15 open reading frame 44 811707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9449 C15orf48 chromosome 15 open reading frame 48 135876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9450 C15orf53 chromosome 15 open reading frame 53 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9451 C15orf54 chromosome 15 open reading frame 54 281892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9452 C15orf57 304707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9453 C15orf59 451230 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9454 C15orf60 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9455 C15orf63 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9456 C16orf45 chromosome 16 open reading frame 45 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9457 C16orf46 chromosome 16 open reading frame 46 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9458 C16orf48 chromosome 16 open reading frame 48 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9459 C16orf5 chromosome 16 open reading frame 5 128778 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9460 C16orf53 chromosome 16 open reading frame 53 147537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9461 C16orf55 chromosome 16 open reading frame 55 116610 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9462 C16orf57 chromosome 16 open reading frame 57 367068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9463 C16orf59 chromosome 16 open reading frame 59 214461 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9464 C16orf61 chromosome 16 open reading frame 61 127764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9465 C16orf63 chromosome 16 open reading frame 63 276315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9466 C16orf68 chromosome 16 open reading frame 68 515112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9467 C16orf70 chromosome 16 open reading frame 70 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9468 C16orf72 chromosome 16 open reading frame 72 311298 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9469 C16orf73 chromosome 16 open reading frame 73 338169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9470 C16orf75 chromosome 16 open reading frame 75 77571 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9471 C16orf78 chromosome 16 open reading frame 78 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9472 C16orf80 chromosome 16 open reading frame 80 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9473 C16orf82 chromosome 16 open reading frame 82 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9474 C16orf87 208377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9475 C16orf88 706251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9476 C16orf92 201786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9477 C17orf101 448695 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9478 C17orf103 49179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9479 C17orf108 49179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9480 C17orf28 chromosome 17 open reading frame 28 896376 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9481 C17orf37 chromosome 17 open reading frame 37 85683 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9482 C17orf39 chromosome 17 open reading frame 39 245895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9483 C17orf42 chromosome 17 open reading frame 42 537420 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9484 C17orf48 chromosome 17 open reading frame 48 527787 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9485 C17orf49 chromosome 17 open reading frame 49 242853 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9486 C17orf56 chromosome 17 open reading frame 56 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9487 C17orf57 chromosome 17 open reading frame 57 1526070 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9488 C17orf58 chromosome 17 open reading frame 58 203814 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9489 C17orf60 chromosome 17 open reading frame 60 541476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9490 C17orf61 chromosome 17 open reading frame 61 136383 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9491 C17orf62 chromosome 17 open reading frame 62 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9492 C17orf63 chromosome 17 open reading frame 63 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9493 C17orf65 chromosome 17 open reading frame 65 95316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9494 C17orf70 chromosome 17 open reading frame 70 343239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9495 C17orf75 chromosome 17 open reading frame 75 513591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9496 C17orf76 chromosome 17 open reading frame 76 205842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9497 C17orf79 chromosome 17 open reading frame 79 237276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9498 C17orf80 chromosome 17 open reading frame 80 949611 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9499 C17orf85 chromosome 17 open reading frame 85 553137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9500 C17orf87 chromosome 17 open reading frame 87 219531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9501 C17orf90 chromosome 17 open reading frame 90 169845 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9502 C17orf98 241839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9503 C18orf1 chromosome 18 open reading frame 1 462384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9504 C18orf10 chromosome 18 open reading frame 10 439062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9505 C18orf21 chromosome 18 open reading frame 21 324987 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9506 C18orf22 chromosome 18 open reading frame 22 455286 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9507 C18orf26 chromosome 18 open reading frame 26 327015 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9508 C18orf32 chromosome 18 open reading frame 32 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9509 C18orf45 chromosome 18 open reading frame 45 443625 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9510 C18orf62 chromosome 18 open reading frame 62 161226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9511 C18orf8 chromosome 18 open reading frame 8 1015014 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9512 C19orf12 chromosome 19 open reading frame 12 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9513 C19orf18 chromosome 19 open reading frame 18 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9514 C19orf2 chromosome 19 open reading frame 2 776217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9515 C19orf21 chromosome 19 open reading frame 21 547053 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9516 C19orf36 chromosome 19 open reading frame 36 121680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9517 C19orf42 chromosome 19 open reading frame 42 125229 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9518 C19orf47 chromosome 19 open reading frame 47 504465 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9519 C19orf48 chromosome 19 open reading frame 48 181506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9520 C19orf50 chromosome 19 open reading frame 50 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9521 C19orf55 chromosome 19 open reading frame 55 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9522 C19orf56 chromosome 19 open reading frame 56 169845 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9523 C19orf66 367068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9524 C19orf73 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9525 C19orf75 311298 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9526 C19orf76 84162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9527 C1D 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9528 C1QA complement component 1, q subcomponent, A chain 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9529 C1QB complement component 1, q subcomponent, B chain 390390 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9530 C1QBP complement component 1, q subcomponent binding protein 322959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9531 C1QC complement component 1, q subcomponent, C chain 284427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9532 C1QL1 complement component 1, q subcomponent-like 1 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9533 C1QL2 complement component 1, q subcomponent-like 2 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9534 C1QL3 complement component 1, q subcomponent-like 3 172887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9535 C1QTNF1 C1q and tumor necrosis factor related protein 1 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9536 C1QTNF2 C1q and tumor necrosis factor related protein 2 363519 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9537 C1QTNF3 C1q and tumor necrosis factor related protein 3 498888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9538 C1QTNF5 C1q and tumor necrosis factor related protein 5 147030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9539 C1QTNF9 C1q and tumor necrosis factor related protein 9 434499 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9540 C1QTNF9B 514098 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9541 C1R complement component 1, r subcomponent 929331 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9542 C1RL complement component 1, r subcomponent-like 713349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9543 C1S complement component 1, s subcomponent 1070277 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9544 C1orf100 chromosome 1 open reading frame 100 233220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9545 C1orf104 chromosome 1 open reading frame 104 362505 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9546 C1orf105 chromosome 1 open reading frame 105 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9547 C1orf106 chromosome 1 open reading frame 106 719433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9548 C1orf107 chromosome 1 open reading frame 107 1175733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9549 C1orf109 chromosome 1 open reading frame 109 317889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9550 C1orf110 chromosome 1 open reading frame 110 466947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9551 C1orf111 chromosome 1 open reading frame 111 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9552 C1orf113 chromosome 1 open reading frame 113 562770 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9553 C1orf115 chromosome 1 open reading frame 115 62868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9554 C1orf116 chromosome 1 open reading frame 116 921726 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9555 C1orf123 chromosome 1 open reading frame 123 253500 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9556 C1orf127 chromosome 1 open reading frame 127 868491 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9557 C1orf128 chromosome 1 open reading frame 128 232206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9558 C1orf131 chromosome 1 open reading frame 131 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9559 C1orf141 chromosome 1 open reading frame 141 622089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9560 C1orf146 chromosome 1 open reading frame 146 285441 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9561 C1orf150 chromosome 1 open reading frame 150 216996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9562 C1orf151 chromosome 1 open reading frame 151 93795 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9563 C1orf156 chromosome 1 open reading frame 156 569361 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9564 C1orf158 chromosome 1 open reading frame 158 304707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9565 C1orf161 chromosome 1 open reading frame 161 564291 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9566 C1orf162 chromosome 1 open reading frame 162 247416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9567 C1orf168 chromosome 1 open reading frame 168 1149369 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9568 C1orf172 chromosome 1 open reading frame 172 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9569 C1orf174 chromosome 1 open reading frame 174 369603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9570 C1orf182 chromosome 1 open reading frame 182 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9571 C1orf189 chromosome 1 open reading frame 189 163254 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9572 C1orf190 chromosome 1 open reading frame 190 341211 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9573 C1orf201 chromosome 1 open reading frame 201 452244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9574 C1orf21 chromosome 1 open reading frame 21 195702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9575 C1orf213 chromosome 1 open reading frame 213 202293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9576 C1orf216 chromosome 1 open reading frame 216 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9577 C1orf227 154635 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9578 C1orf25 chromosome 1 open reading frame 25 1066221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9579 C1orf31 chromosome 1 open reading frame 31 194688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9580 C1orf35 chromosome 1 open reading frame 35 135369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9581 C1orf43 chromosome 1 open reading frame 43 400530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9582 C1orf52 chromosome 1 open reading frame 52 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9583 C1orf53 chromosome 1 open reading frame 53 92274 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9584 C1orf55 chromosome 1 open reading frame 55 701688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9585 C1orf56 chromosome 1 open reading frame 56 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9586 C1orf57 chromosome 1 open reading frame 57 281385 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9587 C1orf59 chromosome 1 open reading frame 59 613470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9588 C1orf63 chromosome 1 open reading frame 63 393432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9589 C1orf64 chromosome 1 open reading frame 64 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9590 C1orf74 chromosome 1 open reading frame 74 412698 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9591 C1orf77 chromosome 1 open reading frame 77 388869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9592 C1orf83 chromosome 1 open reading frame 83 326001 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9593 C1orf84 chromosome 1 open reading frame 84 241839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9594 C1orf87 chromosome 1 open reading frame 87 854295 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9595 C1orf88 chromosome 1 open reading frame 88 304200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9596 C1orf91 chromosome 1 open reading frame 91 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9597 C1orf92 chromosome 1 open reading frame 92 497367 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9598 C1orf93 chromosome 1 open reading frame 93 144495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9599 C1orf95 chromosome 1 open reading frame 95 114075 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9600 C20orf103 chromosome 20 open reading frame 103 436527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9601 C20orf107 chromosome 20 open reading frame 107 265668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9602 C20orf11 chromosome 20 open reading frame 11 356421 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9603 C20orf111 chromosome 20 open reading frame 111 451737 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9604 C20orf112 chromosome 20 open reading frame 112 648960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9605 C20orf118 chromosome 20 open reading frame 118 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9606 C20orf141 chromosome 20 open reading frame 141 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9607 C20orf165 chromosome 20 open reading frame 165 350844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9608 C20orf166 chromosome 20 open reading frame 166 169338 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9609 C20orf194 chromosome 20 open reading frame 194 1787175 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9610 C20orf195 chromosome 20 open reading frame 195 422331 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9611 C20orf196 chromosome 20 open reading frame 196 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9612 C20orf197 chromosome 20 open reading frame 197 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9613 C20orf20 chromosome 20 open reading frame 20 140946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9614 C20orf24 chromosome 20 open reading frame 24 233220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9615 C20orf27 chromosome 20 open reading frame 27 313326 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9616 C20orf29 chromosome 20 open reading frame 29 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9617 C20orf3 chromosome 20 open reading frame 3 602316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9618 C20orf30 chromosome 20 open reading frame 30 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9619 C20orf4 chromosome 20 open reading frame 4 591669 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9620 C20orf46 chromosome 20 open reading frame 46 394953 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9621 C20orf54 chromosome 20 open reading frame 54 580008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9622 C20orf71 chromosome 20 open reading frame 71 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9623 C20orf72 chromosome 20 open reading frame 72 532857 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9624 C20orf85 chromosome 20 open reading frame 85 184548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9625 C20orf94 chromosome 20 open reading frame 94 636285 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9626 C20orf96 chromosome 20 open reading frame 96 542490 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9627 C21orf45 chromosome 21 open reading frame 45 232713 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9628 C21orf59 chromosome 21 open reading frame 59 384306 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9629 C21orf62 chromosome 21 open reading frame 62 336141 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9630 C21orf7 chromosome 21 open reading frame 7 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9631 C21orf70 chromosome 21 open reading frame 70 117117 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9632 C21orf91 chromosome 21 open reading frame 91 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9633 C22orf13 chromosome 22 open reading frame 13 309777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9634 C22orf15 chromosome 22 open reading frame 15 97851 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9635 C22orf24 chromosome 22 open reading frame 24 81627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9636 C22orf25 chromosome 22 open reading frame 25 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9637 C22orf29 chromosome 22 open reading frame 29 503958 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9638 C22orf31 chromosome 22 open reading frame 31 448695 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9639 C22orf32 chromosome 22 open reading frame 32 139932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9640 C22orf36 chromosome 22 open reading frame 36 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9641 C22orf40 90753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9642 C22orf42 361998 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9643 C22orf43 369603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9644 C22orf9 chromosome 22 open reading frame 9 606372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9645 C2CD2 C2 calcium-dependent domain containing 2 764049 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9646 C2CD2L 972426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9647 C2orf15 chromosome 2 open reading frame 15 195702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9648 C2orf18 chromosome 2 open reading frame 18 511563 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9649 C2orf24 chromosome 2 open reading frame 24 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9650 C2orf29 chromosome 2 open reading frame 29 528801 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9651 C2orf3 chromosome 2 open reading frame 3 1087515 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9652 C2orf40 chromosome 2 open reading frame 40 192660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9653 C2orf42 chromosome 2 open reading frame 42 890799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9654 C2orf44 chromosome 2 open reading frame 44 1104246 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9655 C2orf48 chromosome 2 open reading frame 48 249444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9656 C2orf49 chromosome 2 open reading frame 49 310284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9657 C2orf53 chromosome 2 open reading frame 53 510549 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9658 C2orf54 chromosome 2 open reading frame 54 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9659 C2orf55 chromosome 2 open reading frame 55 628680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9660 C2orf56 chromosome 2 open reading frame 56 670761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9661 C2orf57 chromosome 2 open reading frame 57 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9662 C2orf60 chromosome 2 open reading frame 60 455286 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9663 C2orf61 chromosome 2 open reading frame 61 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9664 C2orf64 chromosome 2 open reading frame 64 67938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9665 C2orf66 chromosome 2 open reading frame 66 183534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9666 C2orf67 chromosome 2 open reading frame 67 1531140 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9667 C2orf69 420303 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9668 C2orf7 chromosome 2 open reading frame 7 261612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9669 C2orf70 275808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9670 C2orf77 858858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9671 C2orf80 311298 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9672 C2orf83 196716 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9673 C2orf88 148044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9674 C3AR1 complement component 3a receptor 1 736671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9675 C3orf1 chromosome 3 open reading frame 1 449202 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9676 C3orf14 chromosome 3 open reading frame 14 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9677 C3orf17 chromosome 3 open reading frame 17 852267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9678 C3orf18 chromosome 3 open reading frame 18 96330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9679 C3orf19 chromosome 3 open reading frame 19 734136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9680 C3orf21 chromosome 3 open reading frame 21 333099 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9681 C3orf26 chromosome 3 open reading frame 26 411684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9682 C3orf27 chromosome 3 open reading frame 27 230178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9683 C3orf31 chromosome 3 open reading frame 31 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9684 C3orf32 chromosome 3 open reading frame 32 460356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9685 C3orf37 chromosome 3 open reading frame 37 552123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9686 C3orf39 chromosome 3 open reading frame 39 885222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9687 C3orf43 chromosome 3 open reading frame 43 333099 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9688 C3orf45 chromosome 3 open reading frame 45 239811 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9689 C3orf54 chromosome 3 open reading frame 54 411177 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9690 C3orf55 chromosome 3 open reading frame 55 189111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9691 C3orf57 chromosome 3 open reading frame 57 119145 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9692 C3orf58 chromosome 3 open reading frame 58 326508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9693 C3orf62 chromosome 3 open reading frame 62 413712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9694 C3orf64 chromosome 3 open reading frame 64 699660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9695 C3orf67 chromosome 3 open reading frame 67 882180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9696 C3orf72 221052 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9697 C3orf79 159705 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9698 C4orf14 chromosome 4 open reading frame 14 908037 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9699 C4orf19 chromosome 4 open reading frame 19 483171 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9700 C4orf26 chromosome 4 open reading frame 26 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9701 C4orf27 chromosome 4 open reading frame 27 517647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9702 C4orf29 chromosome 4 open reading frame 29 523731 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9703 C4orf3 134862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9704 C4orf32 chromosome 4 open reading frame 32 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9705 C4orf33 chromosome 4 open reading frame 33 314340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9706 C4orf34 chromosome 4 open reading frame 34 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9707 C4orf37 chromosome 4 open reading frame 37 664677 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9708 C4orf41 chromosome 4 open reading frame 41 1783626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9709 C4orf44 141960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9710 C4orf45 294567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9711 C4orf46 81120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9712 C4orf51 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9713 C4orf6 chromosome 4 open reading frame 6 147030 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9714 C4orf7 chromosome 4 open reading frame 7 136890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9715 C5AR1 complement component 5a receptor 1 537420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9716 C5orf13 chromosome 5 open reading frame 13 111033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9717 C5orf15 chromosome 5 open reading frame 15 338169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9718 C5orf22 chromosome 5 open reading frame 22 690534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9719 C5orf23 chromosome 5 open reading frame 23 187590 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9720 C5orf24 chromosome 5 open reading frame 24 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9721 C5orf30 chromosome 5 open reading frame 30 316875 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9722 C5orf32 chromosome 5 open reading frame 32 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9723 C5orf33 chromosome 5 open reading frame 33 544011 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9724 C5orf34 chromosome 5 open reading frame 34 996255 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9725 C5orf35 chromosome 5 open reading frame 35 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9726 C5orf38 chromosome 5 open reading frame 38 116103 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9727 C5orf39 chromosome 5 open reading frame 39 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9728 C5orf40 chromosome 5 open reading frame 40 344253 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9729 C5orf43 116103 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9730 C5orf44 625131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9731 C5orf46 139932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9732 C5orf48 211419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9733 C5orf53 84162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9734 C5orf54 907023 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9735 C5orf55 180999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9736 C5orf56 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9737 C5orf58 162747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9738 C5orf62 48672 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9739 C6orf1 chromosome 6 open reading frame 1 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9740 C6orf106 chromosome 6 open reading frame 106 422838 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9741 C6orf108 chromosome 6 open reading frame 108 208884 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9742 C6orf114 chromosome 6 open reading frame 114 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9743 C6orf115 chromosome 6 open reading frame 115 128778 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9744 C6orf120 chromosome 6 open reading frame 120 77064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9745 C6orf125 chromosome 6 open reading frame 125 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9746 C6orf126 chromosome 6 open reading frame 126 64389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9747 C6orf127 chromosome 6 open reading frame 127 127257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9748 C6orf130 chromosome 6 open reading frame 130 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9749 C6orf134 chromosome 6 open reading frame 134 511056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9750 C6orf145 chromosome 6 open reading frame 145 231192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9751 C6orf146 chromosome 6 open reading frame 146 786357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9752 C6orf15 chromosome 6 open reading frame 15 463905 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9753 C6orf153 chromosome 6 open reading frame 153 341718 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9754 C6orf162 chromosome 6 open reading frame 162 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9755 C6orf168 chromosome 6 open reading frame 168 621075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9756 C6orf174 chromosome 6 open reading frame 174 942513 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9757 C6orf182 chromosome 6 open reading frame 182 721461 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9758 C6orf186 chromosome 6 open reading frame 186 405093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9759 C6orf191 chromosome 6 open reading frame 191 206349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9760 C6orf192 chromosome 6 open reading frame 192 699660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9761 C6orf195 chromosome 6 open reading frame 195 196716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9762 C6orf201 chromosome 6 open reading frame 201 222573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9763 C6orf203 chromosome 6 open reading frame 203 378729 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9764 C6orf204 chromosome 6 open reading frame 204 1240629 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9765 C6orf221 chromosome 6 open reading frame 221 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9766 C6orf223 chromosome 6 open reading frame 223 206349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9767 C6orf226 143481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9768 C6orf26 chromosome 6 open reading frame 26 222573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9769 C6orf47 chromosome 6 open reading frame 47 447174 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9770 C6orf48 chromosome 6 open reading frame 48 119652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9771 C6orf57 chromosome 6 open reading frame 57 137397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9772 C6orf64 chromosome 6 open reading frame 64 271752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9773 C6orf70 chromosome 6 open reading frame 70 1063686 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9774 C6orf72 chromosome 6 open reading frame 72 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9775 C7orf23 chromosome 7 open reading frame 23 189111 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9776 C7orf25 chromosome 7 open reading frame 25 654537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9777 C7orf27 chromosome 7 open reading frame 27 620061 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9778 C7orf28B chromosome 7 open reading frame 28B 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9779 C7orf29 chromosome 7 open reading frame 29 362505 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9780 C7orf30 chromosome 7 open reading frame 30 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9781 C7orf33 chromosome 7 open reading frame 33 276822 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9782 C7orf34 chromosome 7 open reading frame 34 229164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9783 C7orf36 chromosome 7 open reading frame 36 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9784 C7orf41 chromosome 7 open reading frame 41 122694 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9785 C7orf42 chromosome 7 open reading frame 42 491283 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9786 C7orf43 chromosome 7 open reading frame 43 668226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9787 C7orf44 chromosome 7 open reading frame 44 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9788 C7orf45 chromosome 7 open reading frame 45 378729 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9789 C7orf46 chromosome 7 open reading frame 46 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9790 C7orf47 chromosome 7 open reading frame 47 118131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9791 C7orf49 chromosome 7 open reading frame 49 246402 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9792 C7orf51 chromosome 7 open reading frame 51 526266 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9793 C7orf52 chromosome 7 open reading frame 52 501930 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9794 C7orf55 chromosome 7 open reading frame 55 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9795 C7orf59 117624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9796 C7orf63 1407432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9797 C7orf64 525759 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9798 C7orf66 180492 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9799 C7orf68 99372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9800 C7orf69 136383 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9801 C7orf70 397488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9802 C8A complement component 8, alpha polypeptide 912093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9803 C8B complement component 8, beta polypeptide 924768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9804 C8orf22 chromosome 8 open reading frame 22 132834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9805 C8orf33 chromosome 8 open reading frame 33 359463 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9806 C8orf37 chromosome 8 open reading frame 37 328536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9807 C8orf38 chromosome 8 open reading frame 38 424359 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9808 C8orf4 chromosome 8 open reading frame 4 164775 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9809 C8orf42 chromosome 8 open reading frame 42 164775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9810 C8orf44 chromosome 8 open reading frame 44 247416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9811 C8orf45 chromosome 8 open reading frame 45 923247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9812 C8orf46 chromosome 8 open reading frame 46 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9813 C8orf47 chromosome 8 open reading frame 47 545025 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9814 C8orf59 chromosome 8 open reading frame 59 156663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9815 C8orf74 chromosome 8 open reading frame 74 292032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9816 C8orf76 chromosome 8 open reading frame 76 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9817 C8orf84 302679 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9818 C8orf85 75036 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9819 C9orf103 chromosome 9 open reading frame 103 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9820 C9orf116 chromosome 9 open reading frame 116 127257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9821 C9orf123 chromosome 9 open reading frame 123 126243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9822 C9orf129 chromosome 9 open reading frame 129 251979 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9823 C9orf135 chromosome 9 open reading frame 135 361998 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9824 C9orf142 chromosome 9 open reading frame 142 123708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9825 C9orf150 chromosome 9 open reading frame 150 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9826 C9orf152 chromosome 9 open reading frame 152 369096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9827 C9orf16 chromosome 9 open reading frame 16 89739 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9828 C9orf171 415233 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9829 C9orf173 128271 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9830 C9orf21 chromosome 9 open reading frame 21 221052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9831 C9orf23 chromosome 9 open reading frame 23 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9832 C9orf24 chromosome 9 open reading frame 24 413205 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9833 C9orf30 chromosome 9 open reading frame 30 423852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9834 C9orf37 chromosome 9 open reading frame 37 185562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9835 C9orf4 chromosome 9 open reading frame 4 334620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9836 C9orf40 chromosome 9 open reading frame 40 82641 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9837 C9orf46 chromosome 9 open reading frame 46 233220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9838 C9orf50 chromosome 9 open reading frame 50 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9839 C9orf6 chromosome 9 open reading frame 6 246909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9840 C9orf66 chromosome 9 open reading frame 66 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9841 C9orf68 chromosome 9 open reading frame 68 527787 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9842 C9orf7 chromosome 9 open reading frame 7 161733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9843 C9orf71 chromosome 9 open reading frame 71 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9844 C9orf72 chromosome 9 open reading frame 72 755430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9845 C9orf80 chromosome 9 open reading frame 80 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9846 C9orf82 chromosome 9 open reading frame 82 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9847 C9orf85 chromosome 9 open reading frame 85 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9848 C9orf89 chromosome 9 open reading frame 89 154128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9849 C9orf9 chromosome 9 open reading frame 9 264654 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9850 C9orf95 chromosome 9 open reading frame 95 320424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9851 CA1 carbonic anhydrase I 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9852 CA10 carbonic anhydrase X 518661 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9853 CA12 carbonic anhydrase XII 517140 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9854 CA13 carbonic anhydrase XIII 414219 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9855 CA14 carbonic anhydrase XIV 536406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9856 CA3 carbonic anhydrase III, muscle specific 390897 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9857 CA5A carbonic anhydrase VA, mitochondrial 343746 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9858 CA5B carbonic anhydrase VB, mitochondrial 497874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9859 CA7 carbonic anhydrase VII 394953 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9860 CA8 carbonic anhydrase VIII 411177 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9861 CAB39 calcium binding protein 39 536406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9862 CAB39L calcium binding protein 39-like 530322 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9863 CABC1 chaperone, ABC1 activity of bc1 complex homolog (S. pombe) 409149 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9864 CABLES1 Cdk5 and Abl enzyme substrate 1 569868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9865 CABLES2 Cdk5 and Abl enzyme substrate 2 511056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9866 CABP1 calcium binding protein 1 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9867 CABP2 calcium binding protein 2 229164 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9868 CABP4 calcium binding protein 4 190125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9869 CABP7 calcium binding protein 7 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9870 CACNB3 calcium channel, voltage-dependent, beta 3 subunit 754923 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9871 CACNB4 calcium channel, voltage-dependent, beta 4 subunit 811707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9872 CACNG1 calcium channel, voltage-dependent, gamma subunit 1 347295 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9873 CACNG5 calcium channel, voltage-dependent, gamma subunit 5 590655 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9874 CACNG7 calcium channel, voltage-dependent, gamma subunit 7 429936 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9875 CACYBP calcyclin binding protein 350844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9876 CADM2 cell adhesion molecule 2 686478 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9877 CADM3 cell adhesion molecule 3 632229 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9878 CALB1 calbindin 1, 28kDa 420810 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9879 CALCB calcitonin-related polypeptide beta 200772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9880 CALCOCO2 calcium binding and coiled-coil domain 2 704223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9881 CALHM1 421317 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9882 CALM1 calmodulin 1 (phosphorylase kinase, delta) 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9883 CALM2 calmodulin 2 (phosphorylase kinase, delta) 239304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9884 CALM3 calmodulin 3 (phosphorylase kinase, delta) 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9885 CALML3 calmodulin-like 3 191139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9886 CALML4 calmodulin-like 4 309777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9887 CALML5 calmodulin-like 5 163254 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9888 CALML6 calmodulin-like 6 78585 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9889 CALN1 calneuron 1 348309 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9890 CAMK1D calcium/calmodulin-dependent protein kinase ID 578487 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9891 CAMK2B calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 492804 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9892 CAMK2G calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 811707 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9893 CAMK2N1 calcium/calmodulin-dependent protein kinase II inhibitor 1 38025 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9894 CAMK4 calcium/calmodulin-dependent protein kinase IV 659607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9895 CAMLG calcium modulating ligand 399009 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9896 CAMP cathelicidin antimicrobial peptide 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9897 CAMTA2 calmodulin binding transcription activator 2 1918995 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9898 CAND2 cullin-associated and neddylation-dissociated 2 (putative) 1430754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9899 CANT1 calcium activated nucleotidase 1 441090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9900 CANX calnexin 930345 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9901 CAPG capping protein (actin filament), gelsolin-like 511563 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9902 CAPN3 calpain 3, (p94) 1279668 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9903 CAPN5 calpain 5 848718 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9904 CAPN7 calpain 7 1226940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9905 CAPN9 calpain 9 1091571 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9906 CAPNS1 calpain, small subunit 1 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9907 CAPNS2 calpain, small subunit 2 380757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9908 CAPRIN2 caprin family member 2 1752192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9909 CAPS2 calcyphosine 2 537927 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9910 CAPSL calcyphosine-like 326001 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9911 CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9912 CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 435006 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9913 CAPZA3 capping protein (actin filament) muscle Z-line, alpha 3 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9914 CAPZB capping protein (actin filament) muscle Z-line, beta 382278 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9915 CARD16 319410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9916 CARD17 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9917 CARD18 142467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9918 CARD8 caspase recruitment domain family, member 8 707772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9919 CARHSP1 calcium regulated heat stable protein 1, 24kDa 218010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9920 CARKD 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9921 CARNS1 380250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9922 CARS cysteinyl-tRNA synthetase 1325298 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9923 CASD1 CAS1 domain containing 1 1180803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9924 CASP10 caspase 10, apoptosis-related cysteine peptidase 892320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9925 CASP14 caspase 14, apoptosis-related cysteine peptidase 381771 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9926 CASP3 caspase 3, apoptosis-related cysteine peptidase 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9927 CASP4 caspase 4, apoptosis-related cysteine peptidase 591162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9928 CASP7 caspase 7, apoptosis-related cysteine peptidase 526773 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9929 CASP8AP2 CASP8 associated protein 2 2945163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9930 CASP9 caspase 9, apoptosis-related cysteine peptidase 525759 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9931 CASQ1 calsequestrin 1 (fast-twitch, skeletal muscle) 626145 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9932 CASS4 Cas scaffolding protein family member 4 1208181 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9933 CAT catalase 793962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9934 CAV2 caveolin 2 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9935 CAV3 caveolin 3 235248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9936 CBARA1 calcium binding atopy-related autoantigen 1 706758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9937 CBL Cas-Br-M (murine) ecotropic retroviral transforming sequence 1311102 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9938 CBLL1 Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1 751881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9939 CBLN2 cerebellin 2 precursor 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9940 CBLN3 cerebellin 3 precursor 235248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9941 CBR1 carbonyl reductase 1 280371 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9942 CBR4 carbonyl reductase 4 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9943 CBWD1 COBW domain containing 1 628173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9944 CBWD2 COBW domain containing 2 607893 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9945 CBWD3 COBW domain containing 3 515619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9946 CBWD5 COBW domain containing 5 179985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9947 CBWD6 COBW domain containing 6 327015 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9948 CBX1 chromobox homolog 1 (HP1 beta homolog Drosophila ) 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9949 CBX2 chromobox homolog 2 (Pc class homolog, Drosophila) 669747 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -9950 CBX5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) 300144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9951 CBX7 chromobox homolog 7 128271 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9952 CBY1 chibby homolog 1 (Drosophila) 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9953 CC2D2A coiled-coil and C2 domain containing 2A 2090868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9954 CC2D2B coiled-coil and C2 domain containing 2B 507507 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9955 CCBE1 collagen and calcium binding EGF domains 1 572910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9956 CCBP2 chemokine binding protein 2 587613 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9957 CCDC103 coiled-coil domain containing 103 316368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9958 CCDC107 coiled-coil domain containing 107 307242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9959 CCDC109B coiled-coil domain containing 109B 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9960 CCDC116 coiled-coil domain containing 116 890292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9961 CCDC117 coiled-coil domain containing 117 340197 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9962 CCDC12 coiled-coil domain containing 12 202800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9963 CCDC120 coiled-coil domain containing 120 708786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9964 CCDC122 coiled-coil domain containing 122 426894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9965 CCDC126 coiled-coil domain containing 126 218517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9966 CCDC127 coiled-coil domain containing 127 401037 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9967 CCDC13 coiled-coil domain containing 13 1074840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9968 CCDC130 coiled-coil domain containing 130 513591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9969 CCDC134 coiled-coil domain containing 134 361998 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9970 CCDC137 coiled-coil domain containing 137 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9971 CCDC138 coiled-coil domain containing 138 994227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9972 CCDC140 coiled-coil domain containing 140 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9973 CCDC148 coiled-coil domain containing 148 908037 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9974 CCDC149 coiled-coil domain containing 149 474552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9975 CCDC15 coiled-coil domain containing 15 1420614 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9976 CCDC151 coiled-coil domain containing 151 698646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9977 CCDC153 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9978 CCDC157 688506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9979 CCDC160 497874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9980 CCDC17 coiled-coil domain containing 17 526266 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9981 CCDC22 coiled-coil domain containing 22 375687 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9982 CCDC23 coiled-coil domain containing 23 105963 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9983 CCDC25 coiled-coil domain containing 25 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9984 CCDC28A coiled-coil domain containing 28A 430443 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9985 CCDC28B coiled-coil domain containing 28B 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9986 CCDC3 coiled-coil domain containing 3 225615 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9987 CCDC36 coiled-coil domain containing 36 919191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9988 CCDC37 coiled-coil domain containing 37 684957 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9989 CCDC38 coiled-coil domain containing 38 888264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9990 CCDC40 coiled-coil domain containing 40 1635075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9991 CCDC41 coiled-coil domain containing 41 1098162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9992 CCDC43 coiled-coil domain containing 43 307242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9993 CCDC46 coiled-coil domain containing 46 1589952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9994 CCDC48 coiled-coil domain containing 48 255528 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -9995 CCDC51 coiled-coil domain containing 51 632736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9996 CCDC54 coiled-coil domain containing 54 502437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9997 CCDC55 coiled-coil domain containing 55 852267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9998 CCDC56 coiled-coil domain containing 56 143481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -9999 CCDC58 coiled-coil domain containing 58 230685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10000 CCDC59 coiled-coil domain containing 59 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10001 CCDC6 coiled-coil domain containing 6 673803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10002 CCDC61 coiled-coil domain containing 61 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10003 CCDC64 coiled-coil domain containing 64 671775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10004 CCDC65 coiled-coil domain containing 65 753909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10005 CCDC67 coiled-coil domain containing 67 946062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10006 CCDC68 coiled-coil domain containing 68 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10007 CCDC7 coiled-coil domain containing 7 775203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10008 CCDC70 coiled-coil domain containing 70 357942 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10009 CCDC71 coiled-coil domain containing 71 703209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10010 CCDC74A coiled-coil domain containing 74A 428415 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10011 CCDC75 coiled-coil domain containing 75 271245 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10012 CCDC76 coiled-coil domain containing 76 755430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10013 CCDC77 coiled-coil domain containing 77 766077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10014 CCDC81 coiled-coil domain containing 81 891306 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10015 CCDC85A coiled-coil domain containing 85A 712842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10016 CCDC86 coiled-coil domain containing 86 544011 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10017 CCDC88C coiled-coil domain containing 88C 2207478 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10018 CCDC89 coiled-coil domain containing 89 572403 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10019 CCDC90B coiled-coil domain containing 90B 353379 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10020 CCDC92 coiled-coil domain containing 92 513084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10021 CCDC93 coiled-coil domain containing 93 986622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10022 CCDC94 coiled-coil domain containing 94 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10023 CCDC96 coiled-coil domain containing 96 466947 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10024 CCDC97 coiled-coil domain containing 97 508014 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10025 CCK cholecystokinin 171366 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10026 CCKAR cholecystokinin A receptor 662649 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10027 CCKBR cholecystokinin B receptor 682929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10028 CCL1 chemokine (C-C motif) ligand 1 153621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10029 CCL14 chemokine (C-C motif) ligand 14 149058 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10030 CCL15 chemokine (C-C motif) ligand 15 179478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10031 CCL16 chemokine (C-C motif) ligand 16 190125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10032 CCL17 chemokine (C-C motif) ligand 17 113061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10033 CCL18 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) 142974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10034 CCL19 chemokine (C-C motif) ligand 19 158691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10035 CCL2 chemokine (C-C motif) ligand 2 158184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10036 CCL20 chemokine (C-C motif) ligand 20 155649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10037 CCL22 chemokine (C-C motif) ligand 22 149058 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10038 CCL24 chemokine (C-C motif) ligand 24 188604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10039 CCL25 chemokine (C-C motif) ligand 25 111540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10040 CCL26 chemokine (C-C motif) ligand 26 135369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10041 CCL27 chemokine (C-C motif) ligand 27 177957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10042 CCL28 chemokine (C-C motif) ligand 28 200772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10043 CCL3 chemokine (C-C motif) ligand 3 143481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10044 CCL4 chemokine (C-C motif) ligand 4 147537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10045 CCL5 chemokine (C-C motif) ligand 5 132834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10046 CCL8 chemokine (C-C motif) ligand 8 158184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10047 CCM2 cerebral cavernous malformation 2 500409 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10048 CCNA1 cyclin A1 701181 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10049 CCNB2 cyclin B2 610935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10050 CCND2 cyclin D2 451230 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10051 CCNDBP1 cyclin D-type binding-protein 1 481650 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10052 CCNE1 cyclin E1 587106 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10053 CCNE2 cyclin E2 638313 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10054 CCNG1 cyclin G1 460356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10055 CCNH cyclin H 511056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10056 CCNI cyclin I 587106 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10057 CCNJ cyclin J 557193 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10058 CCNJL cyclin J-like 600288 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10059 CCNO cyclin O 152100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10060 CCNY cyclin Y 460356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10061 CCNYL1 cyclin Y-like 1 454272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10062 CCR1 chemokine (C-C motif) receptor 1 543504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10063 CCR4 chemokine (C-C motif) receptor 4 551109 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10064 CCR6 chemokine (C-C motif) receptor 6 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10065 CCR8 chemokine (C-C motif) receptor 8 543504 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10066 CCR9 chemokine (C-C motif) receptor 9 566826 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10067 CCRL2 chemokine (C-C motif) receptor-like 2 301665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10068 CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 564798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10069 CCS copper chaperone for superoxide dismutase 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10070 CCT3 chaperonin containing TCP1, subunit 3 (gamma) 858858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10071 CCT4 chaperonin containing TCP1, subunit 4 (delta) 783315 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10072 CCT7 chaperonin containing TCP1, subunit 7 (eta) 846690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10073 CD160 CD160 molecule 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10074 CD164L2 CD164 sialomucin-like 2 226122 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10075 CD177 CD177 molecule 622089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10076 CD180 CD180 molecule 1012986 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10077 CD1A CD1a molecule 511056 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10078 CD200 CD200 molecule 454779 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10079 CD200R1 CD200 receptor 1 570882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10080 CD207 CD207 molecule, langerin 512577 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10081 CD209 CD209 molecule 630201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10082 CD247 CD247 molecule 267189 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -10083 CD27 CD27 molecule 409149 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10084 CD28 CD28 molecule 344253 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10085 CD300C CD300c molecule 342225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10086 CD300LB CD300 molecule-like family member b 371631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10087 CD300LD CD300 molecule-like family member d 304707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10088 CD320 CD320 molecule 245895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10089 CD3D CD3d molecule, delta (CD3-TCR complex) 271752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10090 CD44 CD44 molecule (Indian blood group) 1130610 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10091 CD46 CD46 molecule, complement regulatory protein 665184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10092 CD47 CD47 molecule 491283 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10093 CD48 CD48 molecule 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10094 CD53 CD53 molecule 348816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10095 CD58 CD58 molecule 358449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10096 CD59 CD59 molecule, complement regulatory protein 201786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10097 CD6 CD6 molecule 609414 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10098 CD63 CD63 molecule 342225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10099 CD7 CD7 molecule 172380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10100 CD70 CD70 molecule 278850 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10101 CD72 CD72 molecule 525252 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10102 CD79B CD79b molecule, immunoglobulin-associated beta 358449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10103 CD80 CD80 molecule 449709 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10104 CD82 CD82 molecule 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10105 CD84 CD84 molecule 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10106 CD8B CD8b molecule 332085 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10107 CD96 CD96 molecule 921726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10108 CD99L2 CD99 molecule-like 2 386334 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10109 CDA cytidine deaminase 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10110 CDADC1 cytidine and dCMP deaminase domain containing 1 759993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10111 CDAN1 congenital dyserythropoietic anemia, type I 1573728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10112 CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 1004367 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10113 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 704223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10114 CDC16 cell division cycle 16 homolog (S. cerevisiae) 954681 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10115 CDC20 cell division cycle 20 homolog (S. cerevisiae) 780273 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10116 CDC25A cell division cycle 25 homolog A (S. pombe) 703209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10117 CDC25C cell division cycle 25 homolog C (S. pombe) 747318 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10118 CDC26 cell division cycle 26 homolog (S. cerevisiae) 134862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10119 CDC40 cell division cycle 40 homolog (S. cerevisiae) 912600 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10120 CDC42 cell division cycle 42 (GTP binding protein, 25kDa) 349830 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10121 CDC42EP1 CDC42 effector protein (Rho GTPase binding) 1 267189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10122 CDC42EP2 CDC42 effector protein (Rho GTPase binding) 2 322959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10123 CDC42EP3 CDC42 effector protein (Rho GTPase binding) 3 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10124 CDC42EP4 CDC42 effector protein (Rho GTPase binding) 4 538434 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10125 CDC42SE1 CDC42 small effector 1 127764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10126 CDC42SE2 CDC42 small effector 2 135369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10127 CDC45 762528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10128 CDC6 cell division cycle 6 homolog (S. cerevisiae) 875589 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10129 CDC73 cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 843648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10130 CDCA3 cell division cycle associated 3 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10131 CDCA4 cell division cycle associated 4 369603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10132 CDCA5 cell division cycle associated 5 395460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10133 CDCA8 cell division cycle associated 8 392925 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10134 CDCP2 CUB domain containing protein 2 692562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10135 CDH16 cadherin 16, KSP-cadherin 1272063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10136 CDH3 cadherin 3, type 1, P-cadherin (placental) 1165086 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10137 CDH5 cadherin 5, type 2, VE-cadherin (vascular epithelium) 1005381 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10138 CDH7 cadherin 7, type 2 1217814 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10139 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) 277329 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10140 CDK1 473538 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10141 CDK10 cyclin-dependent kinase 10 322452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10142 CDK20 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10143 CDK2AP1 CDK2-associated protein 1 154635 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10144 CDK2AP2 CDK2-associated protein 2 77064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10145 CDK3 cyclin-dependent kinase 3 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10146 CDK4 cyclin-dependent kinase 4 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10147 CDK5R1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 451737 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10148 CDK5R2 cyclin-dependent kinase 5, regulatory subunit 2 (p39) 285441 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10149 CDK5RAP3 CDK5 regulatory subunit associated protein 3 769119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10150 CDK8 cyclin-dependent kinase 8 666705 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10151 CDK9 cyclin-dependent kinase 9 466947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10152 CDKL4 cyclin-dependent kinase-like 4 496860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10153 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10154 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 304200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10155 CDKN2AIPNL CDKN2A interacting protein N-terminal like 60840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10156 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 261105 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10157 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 184548 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10158 CDKN3 cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase) 333606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10159 CDNF 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10160 CDON Cdon homolog (mouse) 1962597 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10161 CDR1 cerebellar degeneration-related protein 1, 34kDa 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10162 CDR2 cerebellar degeneration-related protein 2, 62kDa 702195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10163 CDRT15 CMT1A duplicated region transcript 15 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10164 CDRT4 CMT1A duplicated region transcript 4 235248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10165 CDS2 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 673803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10166 CDV3 CDV3 homolog (mouse) 280371 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10167 CDX1 caudal type homeobox 1 172887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10168 CDX2 caudal type homeobox 2 194181 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10169 CDYL2 chromodomain protein, Y-like 2 696111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10170 CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 819819 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10171 CEACAM16 carcinoembryonic antigen-related cell adhesion molecule 16 410670 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10172 CEACAM19 carcinoembryonic antigen-related cell adhesion molecule 19 413712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10173 CEACAM4 carcinoembryonic antigen-related cell adhesion molecule 4 386334 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10174 CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 1087515 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10175 CEACAM7 carcinoembryonic antigen-related cell adhesion molecule 7 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10176 CEACAM8 carcinoembryonic antigen-related cell adhesion molecule 8 542490 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10177 CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon 432978 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10178 CEBPG CCAAT/enhancer binding protein (C/EBP), gamma 231699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10179 CEBPZ CCAAT/enhancer binding protein zeta 1637103 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10180 CECR1 cat eye syndrome chromosome region, candidate 1 814242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10181 CELA2A 426894 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10182 CELF3 561249 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10183 CELF5 441597 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10184 CEND1 cell cycle exit and neuronal differentiation 1 109512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10185 CENPA centromere protein A 169845 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10186 CENPB centromere protein B, 80kDa 519168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10187 CENPBD1 118131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10188 CENPC1 centromere protein C 1 1156467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10189 CENPH centromere protein H 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10190 CENPI centromere protein I 1191957 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10191 CENPK centromere protein K 428922 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10192 CENPN centromere protein N 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10193 CENPP centromere protein P 399516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10194 CENPQ centromere protein Q 425373 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10195 CENPV 215475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10196 CENPW 141453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10197 CEP97 centrosomal protein 97kDa 1320228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10198 CEPT1 choline/ethanolamine phosphotransferase 1 650481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10199 CERKL ceramide kinase-like 866463 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10200 CES2 carboxylesterase 2 (intestine, liver) 946062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10201 CES3 carboxylesterase 3 (brain) 894855 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10202 CES8 597246 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10203 CETN1 centrin, EF-hand protein, 1 237783 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10204 CETN2 centrin, EF-hand protein, 2 269724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10205 CETN3 centrin, EF-hand protein, 3 (CDC31 homolog, yeast) 265668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10206 CFDP1 craniofacial development protein 1 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10207 CFHR5 complement factor H-related 5 887250 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10208 CFI complement factor I 914628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10209 CFL1 cofilin 1 (non-muscle) 258570 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10210 CFL2 cofilin 2 (muscle) 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10211 CFLAR CASP8 and FADD-like apoptosis regulator 749853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10212 CGA glycoprotein hormones, alpha polypeptide 184041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10213 CGB chorionic gonadotropin, beta polypeptide 120666 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10214 CGB1 chorionic gonadotropin, beta polypeptide 1 216996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10215 CGB2 chorionic gonadotropin, beta polypeptide 2 161733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10216 CGB5 chorionic gonadotropin, beta polypeptide 5 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10217 CGB7 chorionic gonadotropin, beta polypeptide 7 246402 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10218 CGB8 chorionic gonadotropin, beta polypeptide 8 158184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10219 CGGBP1 CGG triplet repeat binding protein 1 257556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10220 CGN cingulin 1818102 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10221 CGREF1 cell growth regulator with EF-hand domain 1 517647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10222 CH25H cholesterol 25-hydroxylase 323466 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10223 CHAC1 ChaC, cation transport regulator homolog 1 (E. coli) 288483 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10224 CHAC2 ChaC, cation transport regulator homolog 2 (E. coli) 251979 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10225 CHAD chondroadherin 536406 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10226 CHAF1B chromatin assembly factor 1, subunit B (p60) 878124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10227 CHAT choline acetyltransferase 1044927 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10228 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 243360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10229 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 176943 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10230 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 199251 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10231 CHCHD8 coiled-coil-helix-coiled-coil-helix domain containing 8 135876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10232 CHD1 chromodomain helicase DNA binding protein 1 2673411 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10233 CHDH choline dehydrogenase 547560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10234 CHEK1 CHK1 checkpoint homolog (S. pombe) 749853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10235 CHFR checkpoint with forkhead and ring finger domains 717912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10236 CHI3L2 chitinase 3-like 2 614991 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10237 CHIC1 cysteine-rich hydrophobic domain 1 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10238 CHIC2 cysteine-rich hydrophobic domain 2 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10239 CHID1 chitinase domain containing 1 474045 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10240 CHIT1 chitinase 1 (chitotriosidase) 715377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10241 CHKA choline kinase alpha 541476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10242 CHKB choline kinase beta 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10243 CHMP1B chromatin modifying protein 1B 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10244 CHMP2A chromatin modifying protein 2A 349323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10245 CHMP2B chromatin modifying protein 2B 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10246 CHMP4A chromatin modifying protein 4A 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10247 CHMP4B chromatin modifying protein 4B 304707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10248 CHMP4C chromatin modifying protein 4C 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10249 CHMP5 chromatin modifying protein 5 350844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10250 CHMP6 chromatin modifying protein 6 185055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10251 CHODL chondrolectin 386841 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10252 CHP 276315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10253 CHP2 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10254 CHPF2 1039350 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10255 CHRAC1 chromatin accessibility complex 1 130299 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10256 CHRDL1 chordin-like 1 720447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10257 CHRDL2 chordin-like 2 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10258 CHRFAM7A CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10259 CHRM4 cholinergic receptor, muscarinic 4 396474 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10260 CHRNA2 cholinergic receptor, nicotinic, alpha 2 (neuronal) 792948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10261 CHRNA5 cholinergic receptor, nicotinic, alpha 5 669747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10262 CHRNA7 cholinergic receptor, nicotinic, alpha 7 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10263 CHRNA9 cholinergic receptor, nicotinic, alpha 9 740220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10264 CHRNE cholinergic receptor, nicotinic, epsilon 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10265 CHST10 carbohydrate sulfotransferase 10 553137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10266 CHST12 carbohydrate (chondroitin 4) sulfotransferase 12 633243 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10267 CHST14 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10268 CHST15 867984 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10269 CHST4 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 590655 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10270 CHST7 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10271 CHSY1 chondroitin sulfate synthase 1 1063179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10272 CHTF8 191646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10273 CHUK conserved helix-loop-helix ubiquitous kinase 1121991 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10274 CIAO1 cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae) 458835 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10275 CIAPIN1 cytokine induced apoptosis inhibitor 1 492297 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10276 CIB1 calcium and integrin binding 1 (calmyrin) 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10277 CIB2 calcium and integrin binding family member 2 270231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10278 CIB3 calcium and integrin binding family member 3 298116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10279 CIB4 calcium and integrin binding family member 4 265668 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10280 CIDEA cell death-inducing DFFA-like effector a 323466 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10281 CIDEB cell death-inducing DFFA-like effector b 344760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10282 CIDEC cell death-inducing DFFA-like effector c 293046 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10283 CILP2 cartilage intermediate layer protein 2 859872 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10284 CINP 333606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10285 CISD1 CDGSH iron sulfur domain 1 154128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10286 CISD2 CDGSH iron sulfur domain 2 158691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10287 CISH cytokine inducible SH2-containing protein 282906 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10288 CKAP4 cytoskeleton-associated protein 4 674310 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10289 CKM creatine kinase, muscle 594711 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10290 CKMT1A creatine kinase, mitochondrial 1A 294567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10291 CKMT1B creatine kinase, mitochondrial 1B 294060 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10292 CKS1B CDC28 protein kinase regulatory subunit 1B 127764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10293 CKS2 CDC28 protein kinase regulatory subunit 2 95823 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10294 CLCA1 chloride channel, calcium activated, family member 1 1420107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10295 CLCA2 chloride channel, calcium activated, family member 2 1464216 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10296 CLCA4 chloride channel, calcium activated, family member 4 1427712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10297 CLCC1 chloride channel CLIC-like 1 859872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10298 CLCF1 cardiotrophin-like cytokine factor 1 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10299 CLCN5 chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease) 1242150 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10300 CLCN6 chloride channel 6 1326819 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10301 CLDN1 claudin 1 326001 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10302 CLDN10 claudin 10 450723 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10303 CLDN16 claudin 16 475566 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10304 CLDN18 claudin 18 488748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10305 CLDN2 claudin 2 353379 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10306 CLDN20 claudin 20 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10307 CLDN22 claudin 22 338169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10308 CLDN25 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10309 CLDN3 claudin 3 131820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10310 CLDN4 claudin 4 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10311 CLDN7 claudin 7 328536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10312 CLDN8 claudin 8 345774 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10313 CLDN9 claudin 9 163761 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10314 CLDND2 claudin domain containing 2 226629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10315 CLEC12A C-type lectin domain family 12, member A 416754 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10316 CLEC12B C-type lectin domain family 12, member B 364533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10317 CLEC16A C-type lectin domain family 16, member A 1544322 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10318 CLEC18A 208377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10319 CLEC18B 539955 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10320 CLEC1B C-type lectin domain family 1, member B 361998 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10321 CLEC2B C-type lectin domain family 2, member B 236262 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10322 CLEC2D C-type lectin domain family 2, member D 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10323 CLEC2L C-type lectin domain family 2, member L 136890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10324 CLEC3A C-type lectin domain family 3, member A 307242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10325 CLEC3B C-type lectin domain family 3, member B 252486 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10326 CLEC4C C-type lectin domain family 4, member C 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10327 CLEC4D C-type lectin domain family 4, member D 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10328 CLEC5A C-type lectin domain family 5, member A 299637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10329 CLEC7A C-type lectin domain family 7, member A 407628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10330 CLEC9A C-type lectin domain family 9, member A 380250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10331 CLECL1 C-type lectin-like 1 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10332 CLGN calmegin 957723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10333 CLIC4 chloride intracellular channel 4 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10334 CLIC6 chloride intracellular channel 6 358449 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10335 CLINT1 clathrin interactor 1 936429 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10336 CLIP3 CAP-GLY domain containing linker protein 3 757965 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10337 CLIP4 CAP-GLY domain containing linker protein family, member 4 1104246 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10338 CLK2 CDC-like kinase 2 783315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10339 CLK3 CDC-like kinase 3 771147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10340 CLLU1 chronic lymphocytic leukemia up-regulated 1 187590 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10341 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 161226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10342 CLN6 ceroid-lipofuscinosis, neuronal 6, late infantile, variant 444639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10343 CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) 440583 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10344 CLNS1A chloride channel, nucleotide-sensitive, 1A 308763 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10345 CLOCK clock homolog (mouse) 1328847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10346 CLP1 CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae) 652002 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10347 CLPB ClpB caseinolytic peptidase B homolog (E. coli) 1110837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10348 CLPP ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli) 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10349 CLPS colipase, pancreatic 177957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10350 CLPTM1L CLPTM1-like 431457 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10351 CLRN1 clarin 1 387855 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10352 CLRN3 clarin 3 351351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10353 CLSTN3 calsyntenin 3 1416558 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10354 CLTA clathrin, light chain (Lca) 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10355 CLTB clathrin, light chain (Lcb) 265161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10356 CLU clusterin 749853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10357 CLUAP1 clusterin associated protein 1 590148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10358 CLVS1 550095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10359 CLVS2 509028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10360 CMA1 chymase 1, mast cell 387348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10361 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase 544011 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10362 CMBL carboxymethylenebutenolidase homolog (Pseudomonas) 384306 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10363 CMC1 159198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10364 CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 271752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10365 CMPK2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial 350337 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10366 CMTM1 CKLF-like MARVEL transmembrane domain containing 1 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10367 CMTM2 CKLF-like MARVEL transmembrane domain containing 2 386841 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10368 CMTM3 CKLF-like MARVEL transmembrane domain containing 3 161226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10369 CMTM4 CKLF-like MARVEL transmembrane domain containing 4 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10370 CMTM6 CKLF-like MARVEL transmembrane domain containing 6 215982 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10371 CMTM7 CKLF-like MARVEL transmembrane domain containing 7 195195 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10372 CMTM8 CKLF-like MARVEL transmembrane domain containing 8 196209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10373 CNBP CCHC-type zinc finger, nucleic acid binding protein 281892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10374 CNGB1 cyclic nucleotide gated channel beta 1 1787175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10375 CNIH2 cornichon homolog 2 (Drosophila) 190632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10376 CNIH3 cornichon homolog 3 (Drosophila) 200772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10377 CNIH4 cornichon homolog 4 (Drosophila) 186069 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10378 CNKSR3 CNKSR family member 3 872040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10379 CNN1 calponin 1, basic, smooth muscle 467454 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10380 CNN2 calponin 2 333099 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10381 CNNM2 cyclin M2 1228461 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10382 CNNM3 cyclin M3 563784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10383 CNNM4 cyclin M4 1082952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10384 CNOT10 CCR4-NOT transcription complex, subunit 10 1158495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10385 CNOT2 CCR4-NOT transcription complex, subunit 2 853281 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10386 CNOT4 CCR4-NOT transcription complex, subunit 4 1046955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10387 CNOT6 CCR4-NOT transcription complex, subunit 6 871026 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10388 CNOT6L CCR4-NOT transcription complex, subunit 6-like 826917 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10389 CNOT7 CCR4-NOT transcription complex, subunit 7 450216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10390 CNPY2 canopy 2 homolog (zebrafish) 288483 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10391 CNPY4 canopy 4 homolog (zebrafish) 390897 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10392 CNR2 cannabinoid receptor 2 (macrophage) 537420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10393 CNRIP1 cannabinoid receptor interacting protein 1 164268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10394 CNTD1 cyclin N-terminal domain containing 1 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10395 CNTF ciliary neurotrophic factor 309777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10396 CNTN5 contactin 5 1576770 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10397 CNTNAP3 contactin associated protein-like 3 1440387 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10398 CNTROB centrobin, centrosomal BRCA2 interacting protein 1446978 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10399 COCH coagulation factor C homolog, cochlin (Limulus polyphemus) 832494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10400 COG2 component of oligomeric golgi complex 2 1157481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10401 COG4 component of oligomeric golgi complex 4 1022112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10402 COG7 component of oligomeric golgi complex 7 1193985 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10403 COG8 component of oligomeric golgi complex 8 634764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10404 COL21A1 collagen, type XXI, alpha 1 1375998 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10405 COL8A2 collagen, type VIII, alpha 2 459342 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10406 COL9A2 collagen, type IX, alpha 2 741741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10407 COLEC10 collectin sub-family member 10 (C-type lectin) 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10408 COLEC11 collectin sub-family member 11 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10409 COMMD1 copper metabolism (Murr1) domain containing 1 282399 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10410 COMMD10 COMM domain containing 10 300144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10411 COMMD3 COMM domain containing 3 241839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10412 COMMD5 COMM domain containing 5 275301 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10413 COMMD7 COMM domain containing 7 279357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10414 COMMD8 COMM domain containing 8 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10415 COMMD9 COMM domain containing 9 286962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10416 COPB1 coatomer protein complex, subunit beta 1 1493622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10417 COPB2 coatomer protein complex, subunit beta 2 (beta prime) 1424163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10418 COPS2 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) 668226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10419 COPS4 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) 599781 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10420 COPS5 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) 525759 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10421 COPS7A COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10422 COPS7B COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis) 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10423 COPZ1 coatomer protein complex, subunit zeta 1 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10424 COPZ2 coatomer protein complex, subunit zeta 2 228150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10425 COQ2 coenzyme Q2 homolog, prenyltransferase (yeast) 438048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10426 COQ4 coenzyme Q4 homolog (S. cerevisiae) 358956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10427 COQ5 coenzyme Q5 homolog, methyltransferase (S. cerevisiae) 513084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10428 COQ6 coenzyme Q6 homolog, monooxygenase (S. cerevisiae) 653016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10429 COQ7 coenzyme Q7 homolog, ubiquinone (yeast) 315354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10430 CORO1A coronin, actin binding protein, 1A 633243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10431 CORO1B coronin, actin binding protein, 1B 324987 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10432 CORO6 coronin 6 390897 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10433 CORT cortistatin 241332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10434 COTL1 coactosin-like 1 (Dictyostelium) 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10435 COX11 COX11 homolog, cytochrome c oxidase assembly protein (yeast) 429429 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10436 COX15 COX15 homolog, cytochrome c oxidase assembly protein (yeast) 631215 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10437 COX16 170859 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10438 COX17 COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) 63375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10439 COX18 COX18 cytochrome c oxidase assembly homolog (S. cerevisiae) 349323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10440 COX4I1 cytochrome c oxidase subunit IV isoform 1 220545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10441 COX4NB COX4 neighbor 211926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10442 COX5B cytochrome c oxidase subunit Vb 151593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10443 COX6A1 cytochrome c oxidase subunit VIa polypeptide 1 131820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10444 COX6B1 cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous) 138411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10445 COX6B2 cytochrome c oxidase subunit VIb polypeptide 2 (testis) 91260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10446 COX7A1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) 74022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10447 COX7A2 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) 184548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10448 COX7A2L cytochrome c oxidase subunit VIIa polypeptide 2 like 180492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10449 COX7B cytochrome c oxidase subunit VIIb 65403 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10450 COX7C cytochrome c oxidase subunit VIIc 88218 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10451 COX8A cytochrome c oxidase subunit 8A (ubiquitous) 104949 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10452 COX8C cytochrome c oxidase subunit 8C 99372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10453 CPA3 carboxypeptidase A3 (mast cell) 658086 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10454 CPA5 carboxypeptidase A5 652509 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10455 CPA6 carboxypeptidase A6 688506 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10456 CPD carboxypeptidase D 1762839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10457 CPE carboxypeptidase E 586092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10458 CPEB4 cytoplasmic polyadenylation element binding protein 4 1130610 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10459 CPLX2 complexin 2 198237 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10460 CPLX3 complexin 3 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10461 CPM carboxypeptidase M 691548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10462 CPNE6 copine VI (neuronal) 879138 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10463 CPO carboxypeptidase O 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10464 CPOX coproporphyrinogen oxidase 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10465 CPPED1 449709 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10466 CPSF2 cleavage and polyadenylation specific factor 2, 100kDa 1219335 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10467 CPSF7 762021 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10468 CPT1B carnitine palmitoyltransferase 1B (muscle) 912093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10469 CR1L complement component (3b/4b) receptor 1-like 890799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10470 CRABP2 cellular retinoic acid binding protein 2 219531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10471 CRADD CASP2 and RIPK1 domain containing adaptor with death domain 308256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10472 CRBN cereblon 660114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10473 CRCP 267189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10474 CREB1 cAMP responsive element binding protein 1 536406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10475 CREB3L4 cAMP responsive element binding protein 3-like 4 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10476 CREB5 cAMP responsive element binding protein 5 822354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10477 CREBL2 cAMP responsive element binding protein-like 2 192153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10478 CREG1 cellular repressor of E1A-stimulated genes 1 162747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10479 CREG2 cellular repressor of E1A-stimulated genes 2 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10480 CRH corticotropin releasing hormone 124215 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10481 CRHBP corticotropin releasing hormone binding protein 455793 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10482 CRIP3 cysteine-rich protein 3 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10483 CRIPT cysteine-rich PDZ-binding protein 155142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10484 CRISP1 cysteine-rich secretory protein 1 394446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10485 CRISP2 cysteine-rich secretory protein 2 385320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10486 CRISP3 cysteine-rich secretory protein 3 388362 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10487 CRISPLD2 cysteine-rich secretory protein LCCL domain containing 2 785850 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10488 CRK v-crk sarcoma virus CT10 oncogene homolog (avian) 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10489 CRLF1 cytokine receptor-like factor 1 243360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10490 CRLF3 cytokine receptor-like factor 3 622596 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10491 CRLS1 cardiolipin synthase 1 322959 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10492 CRP C-reactive protein, pentraxin-related 346281 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10493 CRTAC1 cartilage acidic protein 1 857337 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10494 CRTAM cytotoxic and regulatory T cell molecule 619554 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10495 CRTC1 CREB regulated transcription coactivator 1 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10496 CRTC3 CREB regulated transcription coactivator 3 904488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10497 CRY2 cryptochrome 2 (photolyase-like) 809679 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10498 CRYAA crystallin, alpha A 93288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10499 CRYAB crystallin, alpha B 272766 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10500 CRYBA1 crystallin, beta A1 324987 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10501 CRYBA2 crystallin, beta A2 220038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10502 CRYBA4 crystallin, beta A4 309270 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10503 CRYBB1 crystallin, beta B1 394953 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10504 CRYBB2 crystallin, beta B2 323466 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10505 CRYBB3 crystallin, beta B3 273273 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10506 CRYGA crystallin, gamma A 272259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10507 CRYGB crystallin, gamma B 273780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10508 CRYGD crystallin, gamma D 147537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10509 CRYGN crystallin, gamma N 273780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10510 CRYGS crystallin, gamma S 278343 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10511 CRYL1 crystallin, lambda 1 480129 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10512 CRYZ crystallin, zeta (quinone reductase) 518154 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10513 CSAD cysteine sulfinic acid decarboxylase 779259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10514 CSDA cold shock domain protein A 450723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10515 CSDC2 cold shock domain containing C2, RNA binding 69966 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10516 CSF1R colony stimulating factor 1 receptor, formerly McDonough feline sarcoma viral (v-fms) oncogene homolog 1486017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10517 CSF2 colony stimulating factor 2 (granulocyte-macrophage) 228150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10518 CSF3 colony stimulating factor 3 (granulocyte) 211419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10519 CSHL1 chorionic somatomammotropin hormone-like 1 349323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10520 CSK c-src tyrosine kinase 639834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10521 CSN1S1 casein alpha s1 246909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10522 CSN2 casein beta 357435 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10523 CSN3 casein kappa 284427 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10524 CSNK1A1 casein kinase 1, alpha 1 578994 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10525 CSNK1D casein kinase 1, delta 448188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10526 CSNK1G1 casein kinase 1, gamma 1 665691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10527 CSNK1G3 casein kinase 1, gamma 3 719940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10528 CSNK2B casein kinase 2, beta polypeptide 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10529 CSRNP2 835536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10530 CSRP1 cysteine and glycine-rich protein 1 305214 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10531 CSRP2 cysteine and glycine-rich protein 2 305214 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10532 CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein) 306735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10533 CST1 cystatin SN 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10534 CST11 cystatin 11 217503 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10535 CST3 cystatin C 104442 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10536 CST4 cystatin S 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10537 CST5 cystatin D 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10538 CST6 cystatin E/M 110526 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10539 CST7 cystatin F (leukocystatin) 230178 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10540 CST8 cystatin 8 (cystatin-related epididymal specific) 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10541 CST9 cystatin 9 (testatin) 247416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10542 CST9L cystatin 9-like 231192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10543 CSTA cystatin A (stefin A) 156663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10544 CSTB cystatin B (stefin B) 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10545 CSTF1 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 667212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10546 CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa 905502 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10547 CSTL1 cystatin-like 1 228150 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10548 CT45A5 177957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10549 CT62 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10550 CTAG2 cancer/testis antigen 2 255528 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10551 CTAGE6P 586599 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10552 CTBP2 C-terminal binding protein 2 1254825 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10553 CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 553137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10554 CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 395460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10555 CTDSPL2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 734643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10556 CTHRC1 collagen triple helix repeat containing 1 301158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10557 CTLA4 cytotoxic T-lymphocyte-associated protein 4 348816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10558 CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 1217814 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10559 CTNNBIP1 catenin, beta interacting protein 1 82641 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10560 CTNS cystinosis, nephropathic 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10561 CTPS CTP synthase 934908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10562 CTRB1 chymotrypsinogen B1 118131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10563 CTSC cathepsin C 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10564 CTSD cathepsin D 344760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10565 CTSH cathepsin H 446667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10566 CTSK cathepsin K 516126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10567 CTSL1 cathepsin L1 522210 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10568 CTSO cathepsin O 435513 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10569 CTSW cathepsin W 548574 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10570 CTSZ cathepsin Z 392925 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10571 CTXN3 cortexin 3 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10572 CUEDC2 CUE domain containing 2 454272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10573 CUL2 cullin 2 1175226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10574 CUL3 cullin 3 1166607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10575 CUL4A cullin 4A 1008423 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10576 CUTA cutA divalent cation tolerance homolog (E. coli) 338169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10577 CUTC cutC copper transporter homolog (E. coli) 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10578 CUZD1 CUB and zona pellucida-like domains 1 943020 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10579 CWC15 CWC15 homolog (S. cerevisiae) 299130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10580 CWC22 1354704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10581 CWC25 607386 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10582 CWC27 747825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10583 CX3CL1 chemokine (C-X3-C motif) ligand 1 611442 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10584 CXADR coxsackie virus and adenovirus receptor 547053 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10585 CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) 119652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10586 CXCL10 chemokine (C-X-C motif) ligand 10 158691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10587 CXCL11 chemokine (C-X-C motif) ligand 11 152607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10588 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) 210912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10589 CXCL13 chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10590 CXCL14 chemokine (C-X-C motif) ligand 14 125736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10591 CXCL16 chemokine (C-X-C motif) ligand 16 344253 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10592 CXCL2 chemokine (C-X-C motif) ligand 2 119652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10593 CXCL3 chemokine (C-X-C motif) ligand 3 119652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10594 CXCL5 chemokine (C-X-C motif) ligand 5 126243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10595 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2) 129792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10596 CXCL9 chemokine (C-X-C motif) ligand 9 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10597 CXCR2 551109 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10598 CXCR3 chemokine (C-X-C motif) receptor 3 621582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10599 CXCR4 chemokine (C-X-C motif) receptor 4 554658 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10600 CXCR5 chemokine (C-X-C motif) receptor 5 571389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10601 CXCR6 chemokine (C-X-C motif) receptor 6 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10602 CXXC1 CXXC finger 1 (PHD domain) 1023633 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10603 CXXC4 CXXC finger 4 297102 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10604 CXXC5 CXXC finger 5 218010 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10605 CXorf1 chromosome X open reading frame 1 172380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10606 CXorf21 chromosome X open reading frame 21 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10607 CXorf23 chromosome X open reading frame 23 1061151 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10608 CXorf27 chromosome X open reading frame 27 181506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10609 CXorf38 chromosome X open reading frame 38 443625 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10610 CXorf40B chromosome X open reading frame 40B 245895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10611 CXorf41 chromosome X open reading frame 41 339183 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10612 CXorf48 chromosome X open reading frame 48 280371 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10613 CXorf56 chromosome X open reading frame 56 353379 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10614 CXorf61 chromosome X open reading frame 61 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10615 CYB561 cytochrome b-561 319917 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10616 CYB561D1 cytochrome b-561 domain containing 1 317889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10617 CYB561D2 cytochrome b-561 domain containing 2 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10618 CYB5A cytochrome b5 type A (microsomal) 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10619 CYB5B cytochrome b5 type B (outer mitochondrial membrane) 239811 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10620 CYB5D1 cytochrome b5 domain containing 1 209898 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10621 CYB5D2 cytochrome b5 domain containing 2 407121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10622 CYB5R3 cytochrome b5 reductase 3 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10623 CYB5RL 492804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10624 CYBASC3 cytochrome b, ascorbate dependent 3 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10625 CYBRD1 cytochrome b reductase 1 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10626 CYC1 cytochrome c-1 432978 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10627 CYCS cytochrome c, somatic 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10628 CYFIP1 cytoplasmic FMR1 interacting protein 1 1953978 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10629 CYGB cytoglobin 188097 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10630 CYHR1 cysteine/histidine-rich 1 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10631 CYLC2 cylicin, basic protein of sperm head cytoskeleton 2 540969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10632 CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 784836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10633 CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1 792441 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10634 CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2 798525 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10635 CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 692562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10636 CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 708279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10637 CYP2J2 cytochrome P450, family 2, subfamily J, polypeptide 2 774696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10638 CYP2R1 cytochrome P450, family 2, subfamily R, polypeptide 1 657579 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10639 CYP2U1 cytochrome P450, family 2, subfamily U, polypeptide 1 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10640 CYP39A1 cytochrome P450, family 39, subfamily A, polypeptide 1 739206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10641 CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43 794469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10642 CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 791427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10643 CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10644 CYP4A11 cytochrome P450, family 4, subfamily A, polypeptide 11 815256 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10645 CYP4A22 cytochrome P450, family 4, subfamily A, polypeptide 22 815256 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10646 CYP4F22 cytochrome P450, family 4, subfamily F, polypeptide 22 824889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10647 CYP4F3 cytochrome P450, family 4, subfamily F, polypeptide 3 816777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10648 CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1 696618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10649 CYP7A1 cytochrome P450, family 7, subfamily A, polypeptide 1 780273 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10650 CYTH2 622596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10651 CYTH3 479622 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10652 CYTIP 563784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10653 CYTL1 cytokine-like 1 136890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10654 CYYR1 cysteine/tyrosine-rich 1 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10655 D4S234E 231699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10656 DACH1 dachshund homolog 1 (Drosophila) 814242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10657 DACT1 dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) 973947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10658 DAD1 defender against cell death 1 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10659 DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 1366872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10660 DAGLB diacylglycerol lipase, beta 1026675 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10661 DAP death-associated protein 75036 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10662 DAPK3 death-associated protein kinase 3 349323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10663 DAPL1 death associated protein-like 1 140946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10664 DAPP1 dual adaptor of phosphotyrosine and 3-phosphoinositides 397995 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10665 DARC Duffy blood group, chemokine receptor 530322 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10666 DAXX death-associated protein 6 1170156 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10667 DAZAP1 DAZ associated protein 1 410163 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10668 DAZAP2 DAZ associated protein 2 360477 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10669 DAZL deleted in azoospermia-like 472524 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10670 DBF4 DBF4 homolog (S. cerevisiae) 1025661 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10671 DBF4B DBF4 homolog B (S. cerevisiae) 976482 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10672 DBI diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) 207870 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10673 DBNDD1 dysbindin (dystrobrevin binding protein 1) domain containing 1 135369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10674 DBNL drebrin-like 537420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10675 DBR1 debranching enzyme homolog 1 (S. cerevisiae) 743262 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10676 DBT dihydrolipoamide branched chain transacylase E2 756951 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10677 DBX1 developing brain homeobox 1 406107 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10678 DCAF10 590655 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10679 DCAF15 732615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10680 DCAF16 332085 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10681 DCAF4 781287 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10682 DCAF5 1431768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10683 DCAF6 1329354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10684 DCAF7 532350 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10685 DCAKD dephospho-CoA kinase domain containing 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10686 DCBLD2 discoidin, CUB and LCCL domain containing 2 1106781 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10687 DCD dermcidin 176943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10688 DCDC1 doublecortin domain containing 1 554151 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10689 DCDC2 doublecortin domain containing 2 702702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10690 DCI dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase) 219024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10691 DCK deoxycytidine kinase 363012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10692 DCLRE1A DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) 1601613 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10693 DCLRE1B DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae) 818805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10694 DCN decorin 561756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10695 DCP1B DCP1 decapping enzyme homolog B (S. cerevisiae) 912093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10696 DCP2 DCP2 decapping enzyme homolog (S. cerevisiae) 662649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10697 DCPS decapping enzyme, scavenger 514605 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10698 DCST2 DC-STAMP domain containing 2 1200576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10699 DCTD dCMP deaminase 285948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10700 DCTN1 dynactin 1 (p150, glued homolog, Drosophila) 2015325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10701 DCTN2 dynactin 2 (p50) 517140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10702 DCTN3 dynactin 3 (p22) 310791 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10703 DCTN5 dynactin 5 (p25) 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10704 DCTN6 dynactin 6 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10705 DCTPP1 214968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10706 DCUN1D1 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10707 DCUN1D2 DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae) 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10708 DCUN1D3 DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) 467961 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10709 DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 453258 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10710 DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) 378222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10711 DCX doublecortex; lissencephaly, X-linked (doublecortin) 694083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10712 DCXR dicarbonyl/L-xylulose reductase 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10713 DDA1 DET1 and DDB1 associated 1 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10714 DDAH2 dimethylarginine dimethylaminohydrolase 2 447174 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10715 DDHD1 DDHD domain containing 1 1065207 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10716 DDI2 DDI1, DNA-damage inducible 1, homolog 2 (S. cerevisiae) 554658 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10717 DDIT3 DNA-damage-inducible transcript 3 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10718 DDIT4 DNA-damage-inducible transcript 4 328536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10719 DDIT4L DNA-damage-inducible transcript 4-like 299130 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10720 DDO D-aspartate oxidase 572910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10721 DDOST dolichyl-diphosphooligosaccharide-protein glycosyltransferase 516633 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10722 DDR1 discoidin domain receptor tyrosine kinase 1 1433796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10723 DDTL D-dopachrome tautomerase-like 63375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10724 DDX1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 1169649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10725 DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 1048983 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10726 DDX19A DEAD (Asp-Glu-Ala-As) box polypeptide 19A 701688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10727 DDX19B DEAD (Asp-Glu-Ala-As) box polypeptide 19B 719433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10728 DDX23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 1281189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10729 DDX25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 593697 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10730 DDX28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 598260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10731 DDX39 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 671268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10732 DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 1145313 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10733 DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 717912 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10734 DDX52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 910065 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10735 DDX54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 1139229 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10736 DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 957216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10737 DDX6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 760500 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10738 DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 494325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10739 DEDD death effector domain containing 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10740 DEDD2 death effector domain containing 2 337155 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10741 DEF6 differentially expressed in FDCP 6 homolog (mouse) 575952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10742 DEF8 differentially expressed in FDCP 8 homolog (mouse) 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10743 DEFA1 defensin, alpha 1 141960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10744 DEFA1B 141960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10745 DEFA3 defensin, alpha 3, neutrophil-specific 141960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10746 DEFA4 defensin, alpha 4, corticostatin 152100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10747 DEFA5 defensin, alpha 5, Paneth cell-specific 148551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10748 DEFA6 defensin, alpha 6, Paneth cell-specific 85683 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10749 DEFB104A defensin, beta 104A 115089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10750 DEFB104B defensin, beta 104B 115089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10751 DEFB106A defensin, beta 106A 178464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10752 DEFB106B defensin, beta 106B 178464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10753 DEFB108B defensin, beta 108B 116610 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10754 DEFB110 defensin, beta 110 176943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10755 DEFB116 defensin, beta 116 160719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10756 DEFB119 defensin, beta 119 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10757 DEFB121 defensin, beta 121 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10758 DEFB123 defensin, beta 123 107484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10759 DEFB124 defensin, beta 124 113568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10760 DEFB125 defensin, beta 125 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10761 DEFB126 defensin, beta 126 173394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10762 DEFB127 defensin, beta 127 156156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10763 DEFB128 defensin, beta 128 147030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10764 DEFB132 150072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10765 DEFB134 105963 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10766 DEFB135 122694 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10767 DEFB136 124215 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10768 DEFB4A 31434 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10769 DEGS2 degenerative spermatocyte homolog 2, lipid desaturase (Drosophila) 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10770 DEK DEK oncogene (DNA binding) 546546 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10771 DEM1 570882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10772 DENND2A DENN/MADD domain containing 2A 1453569 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10773 DENND4B DENN/MADD domain containing 4B 2147145 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10774 DENR density-regulated protein 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10775 DEPDC6 DEP domain containing 6 571896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10776 DERA 2-deoxyribose-5-phosphate aldolase homolog (C. elegans) 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10777 DERL1 Der1-like domain family, member 1 351351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10778 DERL2 Der1-like domain family, member 2 330057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10779 DES desmin 438048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10780 DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 529308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10781 DFNB59 deafness, autosomal recessive 59 549081 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10782 DGAT2 diacylglycerol O-acyltransferase homolog 2 (mouse) 544518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10783 DGCR14 DiGeorge syndrome critical region gene 14 468975 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10784 DGCR8 DiGeorge syndrome critical region gene 8 1196013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10785 DGKB diacylglycerol kinase, beta 90kDa 1171170 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10786 DGKK diacylglycerol kinase, kappa 1947894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10787 DGKZ diacylglycerol kinase, zeta 104kDa 709293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10788 DGUOK deoxyguanosine kinase 437034 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10789 DHCR7 7-dehydrocholesterol reductase 549081 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -10790 DHDDS dehydrodolichyl diphosphate synthase 525759 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10791 DHDH dihydrodiol dehydrogenase (dimeric) 379236 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10792 DHDPSL 513084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10793 DHFR dihydrofolate reductase 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10794 DHFRL1 dihydrofolate reductase-like 1 287976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10795 DHODH dihydroorotate dehydrogenase 450723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10796 DHRS1 dehydrogenase/reductase (SDR family) member 1 493818 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10797 DHRS11 334620 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10798 DHRS3 dehydrogenase/reductase (SDR family) member 3 327015 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10799 DHRS4L1 dehydrogenase/reductase (SDR family) member 4 like 1 383292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10800 DHRS4L2 dehydrogenase/reductase (SDR family) member 4 like 2 301665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10801 DHRS7B dehydrogenase/reductase (SDR family) member 7B 468468 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10802 DHRS7C dehydrogenase/reductase (SDR family) member 7C 477594 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10803 DHRSX dehydrogenase/reductase (SDR family) X-linked 455793 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10804 DHX29 DEAH (Asp-Glu-Ala-His) box polypeptide 29 2138526 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10805 DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33 842127 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10806 DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35 1092585 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10807 DHX9 DEAH (Asp-Glu-Ala-His) box polypeptide 9 1987947 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10808 DIABLO diablo homolog (Drosophila) 349830 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10809 DIAPH1 diaphanous homolog 1 (Drosophila) 1925079 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10810 DIAPH2 diaphanous homolog 2 (Drosophila) 1689324 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10811 DIMT1L DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) 459849 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10812 DIO1 deiodinase, iodothyronine, type I 388362 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10813 DIO2 deiodinase, iodothyronine, type II 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10814 DIO3 deiodinase, iodothyronine, type III 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10815 DIP2A DIP2 disco-interacting protein 2 homolog A (Drosophila) 1550406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10816 DIRAS3 DIRAS family, GTP-binding RAS-like 3 351858 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10817 DIS3L2 DIS3 mitotic control homolog (S. cerevisiae)-like 2 1107288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10818 DKK1 dickkopf homolog 1 (Xenopus laevis) 358956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10819 DKK2 dickkopf homolog 2 (Xenopus laevis) 403572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10820 DKK3 dickkopf homolog 3 (Xenopus laevis) 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10821 DLAT dihydrolipoamide S-acetyltransferase 908544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10822 DLG3 discs, large homolog 3 (neuroendocrine-dlg, Drosophila) 1229475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10823 DLG4 discs, large homolog 4 (Drosophila) 1005381 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10824 DLGAP5 1324791 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10825 DLK2 delta-like 2 homolog (Drosophila) 519168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10826 DLL1 delta-like 1 (Drosophila) 755430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10827 DLL3 delta-like 3 (Drosophila) 444639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10828 DLL4 delta-like 4 (Drosophila) 807144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10829 DLST dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) 686985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10830 DLX2 distal-less homeobox 2 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10831 DLX3 distal-less homeobox 3 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10832 DLX4 distal-less homeobox 4 406614 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10833 DMAP1 DNA methyltransferase 1 associated protein 1 686478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10834 DMBX1 diencephalon/mesencephalon homeobox 1 590655 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10835 DMRT2 doublesex and mab-3 related transcription factor 2 621582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10836 DMRTB1 DMRT-like family B with proline-rich C-terminal, 1 302172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10837 DMRTC2 DMRT-like family C2 574938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10838 DMTF1 cyclin D binding myb-like transcription factor 1 1189929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10839 DNAI1 dynein, axonemal, intermediate chain 1 1053039 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10840 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 621582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10841 DNAJA2 DnaJ (Hsp40) homolog, subfamily A, member 2 604851 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10842 DNAJB11 DnaJ (Hsp40) homolog, subfamily B, member 11 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10843 DNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 12 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10844 DNAJB13 DnaJ (Hsp40) related, subfamily B, member 13 498381 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10845 DNAJB14 DnaJ (Hsp40) homolog, subfamily B, member 14 524745 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10846 DNAJB2 DnaJ (Hsp40) homolog, subfamily B, member 2 420303 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10847 DNAJB3 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10848 DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 426387 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10849 DNAJB8 DnaJ (Hsp40) homolog, subfamily B, member 8 356421 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10850 DNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 9 344760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10851 DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 753909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10852 DNAJC12 DnaJ (Hsp40) homolog, subfamily C, member 12 326508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10853 DNAJC16 DnaJ (Hsp40) homolog, subfamily C, member 16 1219335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10854 DNAJC17 DnaJ (Hsp40) homolog, subfamily C, member 17 486213 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10855 DNAJC18 DnaJ (Hsp40) homolog, subfamily C, member 18 546546 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10856 DNAJC19 DnaJ (Hsp40) homolog, subfamily C, member 19 186576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10857 DNAJC21 DnaJ (Hsp40) homolog, subfamily C, member 21 852774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10858 DNAJC22 524238 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10859 DNAJC24 236262 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10860 DNAJC25 384813 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10861 DNAJC4 DnaJ (Hsp40) homolog, subfamily C, member 4 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10862 DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 239304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10863 DNAJC5B DnaJ (Hsp40) homolog, subfamily C, member 5 beta 312312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10864 DNAJC5G DnaJ (Hsp40) homolog, subfamily C, member 5 gamma 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10865 DNAJC7 DnaJ (Hsp40) homolog, subfamily C, member 7 740220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10866 DNAJC8 DnaJ (Hsp40) homolog, subfamily C, member 8 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10867 DNAL4 dynein, axonemal, light chain 4 101907 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10868 DNASE1 deoxyribonuclease I 315861 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10869 DNASE1L1 deoxyribonuclease I-like 1 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10870 DNASE1L3 deoxyribonuclease I-like 3 481650 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10871 DNASE2B deoxyribonuclease II beta 562770 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10872 DNLZ DNL-type zinc finger 73008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10873 DNM1L dynamin 1-like 1161537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10874 DNMT1 DNA (cytosine-5-)-methyltransferase 1 2244996 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10875 DNMT3L DNA (cytosine-5-)-methyltransferase 3-like 200772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10876 DNTTIP2 deoxynucleotidyltransferase, terminal, interacting protein 2 1142778 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10877 DOCK1 dedicator of cytokinesis 1 2791035 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10878 DOCK7 dedicator of cytokinesis 7 3287388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10879 DOHH deoxyhypusine hydroxylase/monooxygenase 176436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10880 DOK1 docking protein 1, 62kDa (downstream of tyrosine kinase 1) 616005 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10881 DOK2 docking protein 2, 56kDa 446667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10882 DOLPP1 dolichyl pyrophosphate phosphatase 1 353379 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10883 DOM3Z dom-3 homolog Z (C. elegans) 616005 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10884 DONSON downstream neighbor of SON 717912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10885 DPCD 287976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10886 DPEP2 dipeptidase 2 668733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10887 DPEP3 dipeptidase 3 657072 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10888 DPF2 D4, zinc and double PHD fingers family 2 618033 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10889 DPF3 D4, zinc and double PHD fingers, family 3 562770 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10890 DPH2 DPH2 homolog (S. cerevisiae) 643890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10891 DPH3 DPH3, KTI11 homolog (S. cerevisiae) 132327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10892 DPH5 DPH5 homolog (S. cerevisiae) 449202 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10893 DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10894 DPM2 dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit 137397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10895 DPM3 dolichyl-phosphate mannosyltransferase polypeptide 3 189111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10896 DPP9 dipeptidyl-peptidase 9 489762 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10897 DPPA4 developmental pluripotency associated 4 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10898 DPPA5 developmental pluripotency associated 5 184041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10899 DPT dermatopontin 315354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10900 DPY19L1 dpy-19-like 1 (C. elegans) 1030731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10901 DPY30 dpy-30 homolog (C. elegans) 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10902 DPYSL3 dihydropyrimidinase-like 3 875082 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10903 DQX1 DEAQ box polypeptide 1 (RNA-dependent ATPase) 983580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10904 DR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2) 275301 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10905 DRAM2 420303 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10906 DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 241332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10907 DRD1 dopamine receptor D1 681915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10908 DRD5 dopamine receptor D5 665184 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -10909 DRG2 developmentally regulated GTP binding protein 2 492804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10910 DRGX dorsal root ganglia homeobox 369603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10911 DSCC1 defective in sister chromatid cohesion 1 homolog (S. cerevisiae) 523224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10912 DSCR3 Down syndrome critical region gene 3 392418 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10913 DSCR4 Down syndrome critical region gene 4 187083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10914 DSCR6 Down syndrome critical region gene 6 237783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10915 DSG2 desmoglein 2 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10916 DSN1 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) 563277 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10917 DSTN destrin (actin depolymerizing factor) 257049 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10918 DTD1 D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae) 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10919 DTNA dystrobrevin, alpha 1219842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10920 DTX3 deltex 3 homolog (Drosophila) 512577 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10921 DTX3L deltex 3-like (Drosophila) 1081431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10922 DUOXA1 dual oxidase maturation factor 1 713349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10923 DUOXA2 dual oxidase maturation factor 2 393432 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10924 DUS1L dihydrouridine synthase 1-like (S. cerevisiae) 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10925 DUS2L dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) 781794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10926 DUS4L dihydrouridine synthase 4-like (S. cerevisiae) 495846 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10927 DUSP1 dual specificity phosphatase 1 379743 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10928 DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) 566319 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10929 DUSP12 dual specificity phosphatase 12 480129 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10930 DUSP14 dual specificity phosphatase 14 304707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10931 DUSP15 dual specificity phosphatase 15 163761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10932 DUSP18 dual specificity phosphatase 18 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10933 DUSP19 dual specificity phosphatase 19 339690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10934 DUSP2 dual specificity phosphatase 2 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10935 DUSP21 dual specificity phosphatase 21 292539 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10936 DUSP22 dual specificity phosphatase 22 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10937 DUSP23 dual specificity phosphatase 23 96330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10938 DUSP3 dual specificity phosphatase 3 217503 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10939 DUSP4 dual specificity phosphatase 4 292539 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10940 DUSP5 dual specificity phosphatase 5 399516 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10941 DUT deoxyuridine triphosphatase 206349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10942 DVL2 dishevelled, dsh homolog 2 (Drosophila) 882687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10943 DYM dymeclin 1051518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10944 DYNC1LI1 dynein, cytoplasmic 1, light intermediate chain 1 707772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10945 DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2 680394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10946 DYNLL1 dynein, light chain, LC8-type 1 140946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10947 DYNLL2 dynein, light chain, LC8-type 2 140946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10948 DYNLRB1 dynein, light chain, roadblock-type 1 155649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10949 DYNLRB2 dynein, light chain, roadblock-type 2 152100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10950 DYNLT1 dynein, light chain, Tctex-type 1 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10951 DYNLT3 dynein, light chain, Tctex-type 3 170859 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10952 DYRK4 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 814749 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10953 DYSFIP1 dysferlin interacting protein 1 103428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10954 DYX1C1 dyslexia susceptibility 1 candidate 1 710814 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10955 DZIP1 DAZ interacting protein 1 1300455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10956 E2F2 E2F transcription factor 2 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10957 E2F5 E2F transcription factor 5, p130-binding 411177 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10958 E2F6 E2F transcription factor 6 386334 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10959 E2F7 E2F transcription factor 7 1411488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10960 E2F8 E2F transcription factor 8 1344564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10961 EAF1 ELL associated factor 1 367068 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10962 EAPP E2F-associated phosphoprotein 447174 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10963 EBAG9 estrogen receptor binding site associated, antigen, 9 330057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10964 EBF1 early B-cell factor 1 622596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10965 EBF3 early B-cell factor 3 611949 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10966 EBI3 Epstein-Barr virus induced gene 3 212940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10967 EBLN2 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10968 EBNA1BP2 EBNA1 binding protein 2 496860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10969 ECSCR 32955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10970 ECSIT ECSIT homolog (Drosophila) 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10971 ECT2L epithelial cell transforming sequence 2 oncogene-like 1417065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10972 EDA ectodysplasin A 624117 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10973 EDAR ectodysplasin A receptor 657072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10974 EDARADD EDAR-associated death domain 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10975 EDC3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) 786357 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10976 EDDM3B 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10977 EDEM1 ER degradation enhancer, mannosidase alpha-like 1 765063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10978 EDEM2 ER degradation enhancer, mannosidase alpha-like 2 875082 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10979 EDF1 endothelial differentiation-related factor 1 157170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10980 EDIL3 EGF-like repeats and discoidin I-like domains 3 753909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10981 EDN2 endothelin 2 141453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10982 EDN3 endothelin 3 365040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10983 EDNRA endothelin receptor type A 665184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10984 EEF1B2 eukaryotic translation elongation factor 1 beta 2 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10985 EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 274287 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10986 EEF1G eukaryotic translation elongation factor 1 gamma 684450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10987 EFCAB1 EF-hand calcium binding domain 1 334620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10988 EFCAB5 EF-hand calcium binding domain 5 2251080 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -10989 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2 609921 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10990 EFHA1 EF-hand domain family, member A1 602316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10991 EFHB EF-hand domain family, member B 1294878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10992 EFHD1 EF-hand domain family, member D1 231699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10993 EFNA1 ephrin-A1 274794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10994 EFNA4 ephrin-A4 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10995 EFNA5 ephrin-A5 293046 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10996 EFNB3 ephrin-B3 448695 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10997 EGFL8 EGF-like-domain, multiple 8 463398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10998 EGLN1 egl nine homolog 1 (C. elegans) 336141 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -10999 EGLN2 egl nine homolog 2 (C. elegans) 477594 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11000 EGLN3 egl nine homolog 3 (C. elegans) 350844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11001 EHBP1L1 EH domain binding protein 1-like 1 1291329 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11002 EHD4 EH-domain containing 4 681408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11003 EHMT1 euchromatic histone-lysine N-methyltransferase 1 1501734 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11004 EHMT2 euchromatic histone-lysine N-methyltransferase 2 1812018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11005 EI24 etoposide induced 2.4 mRNA 471510 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11006 EID1 EP300 interacting inhibitor of differentiation 1 287976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11007 EID2 EP300 interacting inhibitor of differentiation 2 254007 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11008 EID2B EP300 interacting inhibitor of differentiation 2B 223587 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11009 EIF1 eukaryotic translation initiation factor 1 163761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11010 EIF1B eukaryotic translation initiation factor 1B 181506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11011 EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 870012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11012 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2490891 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11013 EIF2B1 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa 483678 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11014 EIF2B2 eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa 545532 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11015 EIF2B3 eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa 730080 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11016 EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa 775203 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11017 EIF2C2 eukaryotic translation initiation factor 2C, 2 1331382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11018 EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa 732615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11019 EIF3B eukaryotic translation initiation factor 3, subunit B 930345 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11020 EIF3D eukaryotic translation initiation factor 3, subunit D 861900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11021 EIF3E eukaryotic translation initiation factor 3, subunit E 704730 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11022 EIF3F eukaryotic translation initiation factor 3, subunit F 559728 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11023 EIF3H eukaryotic translation initiation factor 3, subunit H 533871 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11024 EIF3J eukaryotic translation initiation factor 3, subunit J 331578 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11025 EIF3M eukaryotic translation initiation factor 3, subunit M 569361 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11026 EIF4A1 eukaryotic translation initiation factor 4A, isoform 1 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11027 EIF4E eukaryotic translation initiation factor 4E 334620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11028 EIF4E1B eukaryotic translation initiation factor 4E family member 1B 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11029 EIF4E2 eukaryotic translation initiation factor 4E family member 2 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11030 EIF4E3 eukaryotic translation initiation factor 4E family member 3 226122 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11031 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 111540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11032 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 114582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11033 EIF4EBP3 eukaryotic translation initiation factor 4E binding protein 3 105456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11034 EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 2364648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11035 EIF4H eukaryotic translation initiation factor 4H 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11036 EIF5A eukaryotic translation initiation factor 5A 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11037 EIF5A2 eukaryotic translation initiation factor 5A2 242346 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11038 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 124722 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11039 EIF6 eukaryotic translation initiation factor 6 444639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11040 ELAC1 elaC homolog 1 (E. coli) 559728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11041 ELAVL2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 559728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11042 ELAVL3 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) 545532 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11043 ELAVL4 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 632736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11044 ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 581529 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11045 ELF4 E74-like factor 4 (ets domain transcription factor) 1026168 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11046 ELF5 E74-like factor 5 (ets domain transcription factor) 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11047 ELK4 ELK4, ETS-domain protein (SRF accessory protein 1) 735150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11048 ELMO3 engulfment and cell motility 3 638313 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11049 ELMOD3 616512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11050 ELOF1 elongation factor 1 homolog (S. cerevisiae) 133848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11051 ELOVL1 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 440076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11052 ELOVL2 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 464412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11053 ELOVL4 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 479115 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11054 ELOVL7 ELOVL family member 7, elongation of long chain fatty acids (yeast) 443118 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11055 ELP4 elongation protein 4 homolog (S. cerevisiae) 666705 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11056 ELSPBP1 epididymal sperm binding protein 1 350844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11057 EMCN endomucin 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11058 EMD emerin (Emery-Dreifuss muscular dystrophy) 249951 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11059 EME1 essential meiotic endonuclease 1 homolog 1 (S. pombe) 904488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11060 EMG1 EMG1 nucleolar protein homolog (S. cerevisiae) 375180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11061 EMILIN1 elastin microfibril interfacer 1 806637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11062 EMILIN3 elastin microfibril interfacer 3 1087008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11063 EML1 echinoderm microtubule associated protein like 1 1280682 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11064 EMP1 epithelial membrane protein 1 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11065 EMP2 epithelial membrane protein 2 263640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11066 EMP3 epithelial membrane protein 3 257049 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11067 EMX2 empty spiracles homeobox 2 260091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11068 EN1 engrailed homeobox 1 200265 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11069 EN2 engrailed homeobox 2 135369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11070 ENDOD1 endonuclease domain containing 1 611949 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11071 ENGASE 913614 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11072 ENHO 119145 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11073 ENKUR 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11074 ENO2 enolase 2 (gamma, neuronal) 683436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11075 ENOSF1 enolase superfamily member 1 663156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11076 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 685464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11077 ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 826410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11078 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 678873 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11079 ENY2 enhancer of yellow 2 homolog (Drosophila) 163254 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11080 EOMES eomesodermin homolog (Xenopus laevis) 668226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11081 EP400 E1A binding protein p400 4093518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11082 EPB42 erythrocyte membrane protein band 4.2 1124526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11083 EPC2 enhancer of polycomb homolog 2 (Drosophila) 1188408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11084 EPCAM 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11085 EPDR1 ependymin related protein 1 (zebrafish) 274287 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11086 EPGN epithelial mitogen homolog (mouse) 211926 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11087 EPHA10 EPH receptor A10 939471 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11088 EPHA8 EPH receptor A8 709293 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11089 EPHX2 epoxide hydrolase 2, cytoplasmic 830973 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11090 EPHX3 438048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11091 EPHX4 447174 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11092 EPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) 375687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11093 EPN1 epsin 1 297609 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11094 EPO erythropoietin 296595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11095 EPS15L1 epidermal growth factor receptor pathway substrate 15-like 1 1300455 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11096 EPS8L3 EPS8-like 3 914121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11097 EPSTI1 epithelial stromal interaction 1 (breast) 629187 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11098 EPT1 572910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11099 EPYC epiphycan 503451 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11100 ERAL1 Era G-protein-like 1 (E. coli) 686478 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11101 ERAP1 endoplasmic reticulum aminopeptidase 1 1486017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11102 ERAP2 endoplasmic reticulum aminopeptidase 2 1498185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11103 ERAS ES cell expressed Ras 308763 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11104 ERCC2 excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D) 1060137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11105 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like 1904799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11106 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 628173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11107 EREG epiregulin 232713 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11108 ERGIC2 ERGIC and golgi 2 601302 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11109 ERGIC3 ERGIC and golgi 3 573417 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11110 ERH enhancer of rudimentary homolog (Drosophila) 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11111 ERI1 488241 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11112 ERI2 509028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11113 ERI3 461877 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11114 ERICH1 glutamate-rich 1 648453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11115 ERLIN1 ER lipid raft associated 1 535392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11116 ERLIN2 ER lipid raft associated 2 559221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11117 ERMN ermin, ERM-like protein 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11118 ERMP1 endoplasmic reticulum metallopeptidase 1 1233531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11119 ERP27 endoplasmic reticulum protein 27 kDa 430950 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11120 ERP44 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11121 ERRFI1 ERBB receptor feedback inhibitor 1 710307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11122 ESCO2 establishment of cohesion 1 homolog 2 (S. cerevisiae) 935922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11123 ESM1 endothelial cell-specific molecule 1 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11124 ESRRA estrogen-related receptor alpha 500409 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11125 ETFA electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) 510549 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11126 ETFB electron-transfer-flavoprotein, beta polypeptide 540462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11127 ETFDH electron-transferring-flavoprotein dehydrogenase 947076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11128 ETHE1 ethylmalonic encephalopathy 1 333606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11129 ETV2 ets variant gene 2 233220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11130 ETV3L ets variant gene 3-like 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11131 ETV4 ets variant gene 4 (E1A enhancer binding protein, E1AF) 665691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11132 ETV7 ets variant gene 7 (TEL2 oncogene) 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11133 EVC2 Ellis van Creveld syndrome 2 (limbin) 1816074 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11134 EVI2A ecotropic viral integration site 2A 399516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11135 EVI2B ecotropic viral integration site 2B 684957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11136 EVL Enah/Vasp-like 538941 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11137 EVX1 even-skipped homeobox 1 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11138 EVX2 even-skipped homeobox 2 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11139 EXD1 803595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11140 EXOC3L exocyst complex component 3-like 424866 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11141 EXOC3L2 exocyst complex component 3-like 2 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11142 EXOC7 exocyst complex component 7 924261 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11143 EXOC8 exocyst complex component 8 948090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11144 EXOG 572910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11145 EXOSC1 exosome component 1 314340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11146 EXOSC2 exosome component 2 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11147 EXOSC3 exosome component 3 274794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11148 EXOSC4 exosome component 4 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11149 EXOSC5 exosome component 5 346281 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11150 EXOSC7 exosome component 7 427401 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11151 EXOSC8 exosome component 8 432978 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11152 EXOSC9 exosome component 9 693576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11153 EXTL1 exostoses (multiple)-like 1 791427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11154 EXTL2 exostoses (multiple)-like 2 511563 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11155 EYA2 eyes absent homolog 2 (Drosophila) 807144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11156 EZH2 enhancer of zeste homolog 2 (Drosophila) 1181310 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11157 F10 coagulation factor X 692562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11158 F11 coagulation factor XI (plasma thromboplastin antecedent) 980538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11159 F13B coagulation factor XIII, B polypeptide 1031238 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11160 F2RL1 coagulation factor II (thrombin) receptor-like 1 565812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11161 F3 coagulation factor III (thromboplastin, tissue factor) 409656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11162 F7 coagulation factor VII (serum prothrombin conversion accelerator) 197223 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -11163 F9 coagulation factor IX (plasma thromboplastic component, Christmas disease, hemophilia B) 718926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11164 FA2H fatty acid 2-hydroxylase 351351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11165 FAAH2 fatty acid amide hydrolase 2 833001 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11166 FABP12 222573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11167 FABP3 fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) 211926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11168 FABP5 fatty acid binding protein 5 (psoriasis-associated) 172887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11169 FABP7 fatty acid binding protein 7, brain 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11170 FABP9 fatty acid binding protein 9, testis 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11171 FADD Fas (TNFRSF6)-associated via death domain 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11172 FADS1 fatty acid desaturase 1 585585 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11173 FADS3 fatty acid desaturase 3 392925 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11174 FADS6 fatty acid desaturase domain family, member 6 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11175 FAF1 Fas (TNFRSF6) associated factor 1 964314 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11176 FAHD1 fumarylacetoacetate hydrolase domain containing 1 133341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11177 FAHD2B fumarylacetoacetate hydrolase domain containing 2B 476073 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11178 FAIM Fas apoptotic inhibitory molecule 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11179 FAIM2 Fas apoptotic inhibitory molecule 2 496353 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11180 FAIM3 Fas apoptotic inhibitory molecule 3 462891 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11181 FAM101A family with sequence similarity 101, member A 116103 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11182 FAM101B family with sequence similarity 101, member B 82134 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11183 FAM102B family with sequence similarity 102, member B 530322 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11184 FAM103A1 family with sequence similarity 103, member A1 185055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11185 FAM104A family with sequence similarity 104, member A 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11186 FAM104B family with sequence similarity 104, member B 237276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11187 FAM105A family with sequence similarity 105, member A 524745 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11188 FAM105B family with sequence similarity 105, member B 472017 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11189 FAM108B1 family with sequence similarity 108, member B1 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11190 FAM108C1 family with sequence similarity 108, member C1 206856 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11191 FAM109A family with sequence similarity 109, member A 152607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11192 FAM109B family with sequence similarity 109, member B 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11193 FAM110B family with sequence similarity 110, member B 563784 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11194 FAM113A family with sequence similarity 113, member A 706251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11195 FAM117A family with sequence similarity 117, member A 605358 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11196 FAM118A family with sequence similarity 118, member A 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11197 FAM119A family with sequence similarity 119, member A 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11198 FAM119B family with sequence similarity 119, member B 423852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11199 FAM120AOS family with sequence similarity 120A opposite strand 109512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11200 FAM122A family with sequence similarity 122A 380757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11201 FAM123A family with sequence similarity 123A 711321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11202 FAM123C family with sequence similarity 123C 795990 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11203 FAM125A family with sequence similarity 125, member A 399516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11204 FAM125B family with sequence similarity 125, member B 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11205 FAM126A family with sequence similarity 126, member A 814242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11206 FAM126B family with sequence similarity 126, member B 827931 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11207 FAM127A family with sequence similarity 127, member A 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11208 FAM127B family with sequence similarity 127, member B 175422 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11209 FAM127C family with sequence similarity 127, member C 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11210 FAM128A family with sequence similarity 128, member A 82134 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11211 FAM128B family with sequence similarity 128, member B 82134 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11212 FAM131A family with sequence similarity 131, member A 437541 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11213 FAM131B family with sequence similarity 131, member B 508014 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11214 FAM133B family with sequence similarity 133, member B 301665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11215 FAM134A family with sequence similarity 134, member A 701181 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11216 FAM134B family with sequence similarity 134, member B 631215 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11217 FAM134C family with sequence similarity 134, member C 614991 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11218 FAM135A family with sequence similarity 135, member A 2138526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11219 FAM150A family with sequence similarity 150, member A 107484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11220 FAM150B family with sequence similarity 150, member B 112554 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11221 FAM151A family with sequence similarity 151, member A 907530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11222 FAM151B family with sequence similarity 151, member B 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11223 FAM153A family with sequence similarity 153, member A 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11224 FAM153B family with sequence similarity 153, member B 553137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11225 FAM153C family with sequence similarity 153, member C 127257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11226 FAM154B family with sequence similarity 154, member B 584064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11227 FAM158A 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11228 FAM159A 241332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11229 FAM162A 226629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11230 FAM162B 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11231 FAM163A 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11232 FAM164A 503958 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11233 FAM165B 93795 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11234 FAM168A 371124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11235 FAM168B 248937 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11236 FAM169B 303693 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11237 FAM170A 510042 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11238 FAM172A 629187 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11239 FAM174A 164775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11240 FAM175A 559728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11241 FAM175B 647946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11242 FAM176A 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11243 FAM177A1 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11244 FAM178A 1791231 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11245 FAM181A 544011 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11246 FAM183A 213447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11247 FAM187B 553644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11248 FAM189A2 699660 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11249 FAM189B 850239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11250 FAM18A family with sequence similarity 18, member A 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11251 FAM18B family with sequence similarity 18, member B 319410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11252 FAM192A 353886 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11253 FAM198B 839592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11254 FAM19A1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 150072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11255 FAM19A2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11256 FAM19A3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 207870 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11257 FAM19A4 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11258 FAM19A5 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 66924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11259 FAM20B family with sequence similarity 20, member B 637806 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11260 FAM21B family with sequence similarity 21, member B 1745094 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11261 FAM22F family with sequence similarity 22, member F 765063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11262 FAM24A family with sequence similarity 24, member A 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11263 FAM24B family with sequence similarity 24, member B 148551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11264 FAM26E family with sequence similarity 26, member E 475566 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11265 FAM32A family with sequence similarity 32, member A 85683 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11266 FAM35A family with sequence similarity 35, member A 1285752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11267 FAM3A family with sequence similarity 3, member A 233220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11268 FAM3B family with sequence similarity 3, member B 363519 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11269 FAM3D family with sequence similarity 3, member D 360477 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11270 FAM40B family with sequence similarity 40, member B 1256853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11271 FAM46B family with sequence similarity 46, member B 264654 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11272 FAM46D family with sequence similarity 46, member D 595218 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11273 FAM47C family with sequence similarity 47, member C 1577784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11274 FAM48A family with sequence similarity 48, member A 1238601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11275 FAM50A family with sequence similarity 50, member A 457314 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11276 FAM50B family with sequence similarity 50, member B 272259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11277 FAM53A family with sequence similarity 53, member A 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11278 FAM54A family with sequence similarity 54, member A 601302 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11279 FAM55C family with sequence similarity 55, member C 861900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11280 FAM55D family with sequence similarity 55, member D 839085 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11281 FAM57A family with sequence similarity 57, member A 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11282 FAM58B family with sequence similarity 58, member B 386841 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11283 FAM5B family with sequence similarity 5, member B 1206660 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11284 FAM60A family with sequence similarity 60, member A 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11285 FAM63B family with sequence similarity 63, member B 709293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11286 FAM64A family with sequence similarity 64, member A 318396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11287 FAM69A family with sequence similarity 69, member A 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11288 FAM69B family with sequence similarity 69, member B 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11289 FAM69C 187083 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11290 FAM70A family with sequence similarity 70, member A 521196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11291 FAM70B family with sequence similarity 70, member B 283413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11292 FAM71D family with sequence similarity 71, member D 632736 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11293 FAM71E1 family with sequence similarity 71, member E1 191139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11294 FAM71F1 family with sequence similarity 71, member F1 538941 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11295 FAM71F2 family with sequence similarity 71, member F2 480129 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11296 FAM72A family with sequence similarity 72, member A 210912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11297 FAM72B family with sequence similarity 72, member B 236262 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11298 FAM76A family with sequence similarity 76, member A 443625 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11299 FAM76B family with sequence similarity 76, member B 491283 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11300 FAM78A family with sequence similarity 78, member A 312312 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11301 FAM78B family with sequence similarity 78, member B 295581 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11302 FAM82A1 895362 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11303 FAM82A2 718926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11304 FAM84A family with sequence similarity 84, member A 174408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11305 FAM84B family with sequence similarity 84, member B 131820 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11306 FAM86C family with sequence similarity 86, member C 255021 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11307 FAM89A family with sequence similarity 89, member A 135876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11308 FAM89B family with sequence similarity 89, member B 140946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11309 FAM8A1 family with sequence similarity 8, member A1 276822 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11310 FAM92B family with sequence similarity 92, member B 426387 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11311 FAM96A family with sequence similarity 96, member A 255021 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11312 FAM98C family with sequence similarity 98, member C 365547 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11313 FAM9A family with sequence similarity 9, member A 457821 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11314 FAM9C family with sequence similarity 9, member C 266175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11315 FANCB Fanconi anemia, complementation group B 1324284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11316 FANCC Fanconi anemia, complementation group C 877617 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11317 FANCE Fanconi anemia, complementation group E 709293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11318 FANCL Fanconi anemia, complementation group L 607893 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11319 FAR2 807144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11320 FASTK Fas-activated serine/threonine kinase 417261 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11321 FAU Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed 211926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11322 FBLIM1 filamin binding LIM protein 1 604851 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11323 FBLN5 fibulin 5 675324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11324 FBLN7 fibulin 7 598767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11325 FBN2 fibrillin 2 (congenital contractural arachnodactyly) 4387578 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11326 FBP1 fructose-1,6-bisphosphatase 1 441597 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11327 FBP2 fructose-1,6-bisphosphatase 2 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11328 FBRS fibrosin 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11329 FBXL12 F-box and leucine-rich repeat protein 12 353379 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11330 FBXL14 F-box and leucine-rich repeat protein 14 553137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11331 FBXL17 F-box and leucine-rich repeat protein 17 516126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11332 FBXL20 F-box and leucine-rich repeat protein 20 671775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11333 FBXL21 F-box and leucine-rich repeat protein 21 667212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11334 FBXL22 F-box and leucine-rich repeat protein 22 258570 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11335 FBXL5 F-box and leucine-rich repeat protein 5 1030224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11336 FBXL7 F-box and leucine-rich repeat protein 7 729066 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11337 FBXO11 F-box protein 11 1384110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11338 FBXO16 F-box protein 16 454779 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11339 FBXO17 F-box protein 17 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11340 FBXO2 F-box protein 2 188604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11341 FBXO22 F-box protein 22 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11342 FBXO31 F-box protein 31 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11343 FBXO33 F-box protein 33 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11344 FBXO36 F-box protein 36 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11345 FBXO38 F-box protein 38 1851057 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11346 FBXO4 F-box protein 4 519675 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11347 FBXO42 F-box protein 42 1110330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11348 FBXO45 F-box protein 45 279357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11349 FBXO46 F-box protein 46 796497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11350 FBXO47 F-box protein 47 709293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11351 FBXO48 241332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11352 FBXO8 F-box protein 8 496860 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11353 FBXO9 F-box protein 9 597246 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11354 FBXW11 F-box and WD repeat domain containing 11 859365 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11355 FCER1G Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide 142467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11356 FCER2 Fc fragment of IgE, low affinity II, receptor for (CD23) 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11357 FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32) 497874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11358 FCGR2B Fc fragment of IgG, low affinity IIb, receptor (CD32) 357942 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11359 FCGR2C Fc fragment of IgG, low affinity IIc, receptor for (CD32) 435513 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11360 FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a) 452751 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11361 FCGR3B Fc fragment of IgG, low affinity IIIb, receptor (CD16b) 366054 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11362 FCHSD2 FCH and double SH3 domains 2 1046955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11363 FCN3 ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen) 423345 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11364 FCRL3 Fc receptor-like 3 1146327 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11365 FCRL4 Fc receptor-like 4 809172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11366 FCRL6 Fc receptor-like 6 681915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11367 FCRLA Fc receptor-like A 583557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11368 FDX1 ferredoxin 1 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11369 FDX1L ferredoxin 1-like 184548 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11370 FDXACB1 790920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11371 FECH ferrochelatase (protoporphyria) 635778 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11372 FEM1A fem-1 homolog a (C. elegans) 551109 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11373 FEM1C fem-1 homolog c (C. elegans) 944034 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11374 FER fer (fps/fes related) tyrosine kinase 1288287 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11375 FERMT1 fermitin family homolog 1 (Drosophila) 1059630 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11376 FEZ2 fasciculation and elongation protein zeta 2 (zygin II) 420303 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11377 FEZF1 FEZ family zinc finger 1 637806 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11378 FFAR2 free fatty acid receptor 2 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11379 FGB fibrinogen beta chain 683943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11380 FGD1 FYVE, RhoGEF and PH domain containing 1 (faciogenital dysplasia) 1221363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11381 FGD2 FYVE, RhoGEF and PH domain containing 2 953667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11382 FGD6 FYVE, RhoGEF and PH domain containing 6 2208999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11383 FGF1 fibroblast growth factor 1 (acidic) 243360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11384 FGF10 fibroblast growth factor 10 323973 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11385 FGF12 fibroblast growth factor 12 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11386 FGF14 fibroblast growth factor 14 467961 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11387 FGF16 fibroblast growth factor 16 182013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11388 FGF17 fibroblast growth factor 17 200772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11389 FGF19 fibroblast growth factor 19 161733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11390 FGF2 fibroblast growth factor 2 (basic) 151086 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11391 FGF20 fibroblast growth factor 20 181506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11392 FGF21 fibroblast growth factor 21 324480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11393 FGF4 fibroblast growth factor 4 (heparin secretory transforming protein 1, Kaposi sarcoma oncogene) 107484 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11394 FGF8 fibroblast growth factor 8 (androgen-induced) 265161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11395 FGF9 fibroblast growth factor 9 (glia-activating factor) 323973 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11396 FGFBP3 fibroblast growth factor binding protein 3 106977 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11397 FGFR1 fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) 1207674 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11398 FGFR1OP FGFR1 oncogene partner 581022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11399 FGFR1OP2 FGFR1 oncogene partner 2 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11400 FGG fibrinogen gamma chain 718419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11401 FGGY FGGY carbohydrate kinase domain containing 908544 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11402 FGL1 fibrinogen-like 1 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11403 FGR Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog 828438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11404 FH fumarate hydratase 728559 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11405 FHL2 four and a half LIM domains 2 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11406 FHL3 four and a half LIM domains 3 437541 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11407 FHOD1 formin homology 2 domain containing 1 1570179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11408 FIBCD1 fibrinogen C domain containing 1 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11409 FIBIN 324480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11410 FIBP fibroblast growth factor (acidic) intracellular binding protein 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11411 FICD FIC domain containing 702195 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11412 FIG4 FIG4 homolog (S. cerevisiae) 1392222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11413 FIGLA folliculogenesis specific basic helix-loop-helix 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11414 FIS1 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) 242346 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11415 FITM1 426894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11416 FITM2 349830 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11417 FKBP10 FK506 binding protein 10, 65 kDa 690534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11418 FKBP14 FK506 binding protein 14, 22 kDa 330564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11419 FKBP1A FK506 binding protein 1A, 12kDa 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11420 FKBP1B FK506 binding protein 1B, 12.6 kDa 175929 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11421 FKBP2 FK506 binding protein 2, 13kDa 226629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11422 FKBP3 FK506 binding protein 3, 25kDa 355914 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11423 FKBP4 FK506 binding protein 4, 59kDa 663156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11424 FKBP5 FK506 binding protein 5 746304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11425 FKBP6 FK506 binding protein 6, 36kDa 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11426 FKBP7 FK506 binding protein 7 347295 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11427 FKBP9 FK506 binding protein 9, 63 kDa 774696 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11428 FLAD1 FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) 981552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11429 FLCN folliculin 740727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11430 FLJ10357 1960062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11431 FLJ37543 184548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11432 FLJ44635 218517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11433 FLOT1 flotillin 1 675324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11434 FLOT2 flotillin 2 634764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11435 FLVCR2 feline leukemia virus subgroup C cellular receptor family, member 2 821847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11436 FLYWCH2 FLYWCH family member 2 218517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11437 FMNL1 formin-like 1 1327833 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11438 FMNL2 formin-like 2 1652820 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11439 FMOD fibromodulin 577473 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11440 FN3K fructosamine 3 kinase 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11441 FN3KRP 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11442 FNDC4 fibronectin type III domain containing 4 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11443 FNDC5 fibronectin type III domain containing 5 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11444 FNDC8 fibronectin type III domain containing 8 502437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11445 FNIP2 folliculin interacting protein 2 1668537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11446 FNTA farnesyltransferase, CAAX box, alpha 492804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11447 FNTB farnesyltransferase, CAAX box, beta 690534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11448 FOLH1B 698139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11449 FOLR1 folate receptor 1 (adult) 400530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11450 FOLR2 folate receptor 2 (fetal) 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11451 FOLR3 folate receptor 3 (gamma) 381264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11452 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog 568347 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11453 FOSB FBJ murine osteosarcoma viral oncogene homolog B 466947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11454 FOSL1 FOS-like antigen 1 369096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11455 FOXA2 forkhead box A2 521196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11456 FOXA3 forkhead box A3 499902 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11457 FOXB1 forkhead box B1 272259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11458 FOXC1 forkhead box C1 235248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11459 FOXD2 forkhead box D2 195702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11460 FOXD4L3 forkhead box D4-like 3 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11461 FOXD4L6 forkhead box D4-like 6 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11462 FOXE3 forkhead box E3 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11463 FOXF1 forkhead box F1 249444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11464 FOXF2 forkhead box F2 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11465 FOXG1 forkhead box G1 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11466 FOXI1 forkhead box I1 580008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11467 FOXJ1 forkhead box J1 179478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11468 FOXK2 forkhead box K2 400023 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11469 FOXL1 forkhead box L1 266682 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11470 FOXL2 forkhead box L2 161226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11471 FOXN1 forkhead box N1 863421 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11472 FOXN4 forkhead box N4 473031 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11473 FOXO1 forkhead box O1 680394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11474 FOXO3 forkhead box O3 738699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11475 FOXR1 forkhead box R1 424866 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11476 FOXRED1 FAD-dependent oxidoreductase domain containing 1 379743 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11477 FOXRED2 FAD-dependent oxidoreductase domain containing 2 956709 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11478 FOXS1 forkhead box S1 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11479 FPGS folylpolyglutamate synthase 608400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11480 FPGT fucose-1-phosphate guanylyltransferase 869505 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11481 FRA10AC1 507000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11482 FRG2 FSHD region gene 2 329043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11483 FRG2B FSHD region gene 2 family, member B 335127 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11484 FRG2C FSHD region gene 2 family, member C 438555 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11485 FRK fyn-related kinase 785850 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11486 FRMD1 FERM domain containing 1 598767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11487 FRMD8 FERM domain containing 8 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11488 FRS2 fibroblast growth factor receptor substrate 2 784329 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11489 FRZB frizzled-related protein 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11490 FSCN1 fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 329550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11491 FSHB follicle stimulating hormone, beta polypeptide 201786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11492 FSTL1 follistatin-like 1 464919 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11493 FTH1 ferritin, heavy polypeptide 1 228150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11494 FTHL17 ferritin, heavy polypeptide-like 17 279864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11495 FTMT ferritin mitochondrial 318903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11496 FTO fat mass and obesity associated 763035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11497 FTSJ1 FtsJ homolog 1 (E. coli) 524238 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11498 FTSJ2 FtsJ homolog 2 (E. coli) 375687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11499 FUBP3 far upstream element (FUSE) binding protein 3 855816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11500 FUCA1 fucosidase, alpha-L- 1, tissue 527280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11501 FUCA2 fucosidase, alpha-L- 2, plasma 610428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11502 FUNDC2 FUN14 domain containing 2 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11503 FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) 557193 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11504 FUT10 fucosyltransferase 10 (alpha (1,3) fucosyltransferase) 738192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11505 FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) 502437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11506 FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) 944541 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11507 FUT9 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) 549588 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11508 FXC1 fracture callus 1 homolog (rat) 163761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11509 FXN frataxin 249444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11510 FXYD1 FXYD domain containing ion transport regulator 1 (phospholemman) 132327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11511 FXYD3 FXYD domain containing ion transport regulator 3 239811 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11512 FXYD5 FXYD domain containing ion transport regulator 5 288483 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11513 FXYD6 FXYD domain containing ion transport regulator 6 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11514 FXYD7 FXYD domain containing ion transport regulator 7 117624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11515 FYN FYN oncogene related to SRC, FGR, YES 921726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11516 FYTTD1 forty-two-three domain containing 1 449202 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11517 FZD10 frizzled homolog 10 (Drosophila) 600795 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11518 FZD2 frizzled homolog 2 (Drosophila) 700674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11519 FZD4 frizzled homolog 4 (Drosophila) 675831 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11520 FZD7 frizzled homolog 7 (Drosophila) 813735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11521 G2E3 1103739 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11522 G6PC glucose-6-phosphatase, catalytic subunit 554658 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11523 G6PC3 glucose 6 phosphatase, catalytic, 3 484692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11524 GAB4 GRB2-associated binding protein family, member 4 640848 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11525 GABARAP GABA(A) receptor-associated protein 139932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11526 GABARAPL1 GABA(A) receptor-associated protein like 1 139932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11527 GABARAPL2 GABA(A) receptor-associated protein-like 2 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11528 GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 1379040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11529 GABPB1 GA binding protein transcription factor, beta subunit 1 642876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11530 GABPB2 GA binding protein transcription factor, beta subunit 2 699153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11531 GABRA2 gamma-aminobutyric acid (GABA) A receptor, alpha 2 705744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11532 GABRA4 gamma-aminobutyric acid (GABA) A receptor, alpha 4 862407 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11533 GABRA5 gamma-aminobutyric acid (GABA) A receptor, alpha 5 666705 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11534 GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 740727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11535 GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon 758979 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11536 GABRP gamma-aminobutyric acid (GABA) A receptor, pi 689013 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11537 GABRR2 gamma-aminobutyric acid (GABA) receptor, rho 2 728559 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11538 GADD45A growth arrest and DNA-damage-inducible, alpha 150579 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11539 GADD45GIP1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 206349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11540 GAGE1 G antigen 1 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11541 GAGE10 G antigen 10 186069 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11542 GAGE2A G antigen 2A 235755 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11543 GAGE2C G antigen 2C 460356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11544 GAGE2D G antigen 2D 353886 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11545 GAGE2E G antigen 2E 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11546 GAGE4 G antigen 4 63375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11547 GAGE5 G antigen 5 63375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11548 GAGE7 G antigen 7 63375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11549 GAGE8 G antigen 8 301665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11550 GAK cyclin G associated kinase 952146 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11551 GAL3ST1 galactose-3-O-sulfotransferase 1 514605 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11552 GAL3ST4 galactose-3-O-sulfotransferase 4 744276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11553 GALC galactosylceramidase 1008930 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11554 GALE UDP-galactose-4-epimerase 496860 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11555 GALK1 galactokinase 1 218010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11556 GALK2 galactokinase 2 701688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11557 GALM galactose mutarotase (aldose 1-epimerase) 521703 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11558 GALNS galactosamine (N-acetyl)-6-sulfate sulfatase (Morquio syndrome, mucopolysaccharidosis type IVA) 336141 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11559 GALNT1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) 874068 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11560 GALNT12 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) 677352 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11561 GALNT14 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) 860886 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11562 GALNT2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) 835029 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11563 GALNT6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 967863 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11564 GALNT8 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 992199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11565 GALNT9 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 295074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11566 GALNTL2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 993720 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11567 GALNTL4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 825396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11568 GALP galanin-like peptide 188097 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11569 GALR3 galanin receptor 3 143481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11570 GAN giant axonal neuropathy (gigaxonin) 845169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11571 GANAB glucosidase, alpha; neutral AB 1504776 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11572 GAPDH glyceraldehyde-3-phosphate dehydrogenase 493818 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11573 GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic 644397 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11574 GAPT 242346 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11575 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1582347 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11576 GAS2 growth arrest-specific 2 491790 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11577 GAS2L1 growth arrest-specific 2 like 1 442104 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11578 GAS2L2 growth arrest-specific 2 like 2 1309074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11579 GAS7 growth arrest-specific 7 687999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11580 GAS8 growth arrest-specific 8 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11581 GAST gastrin 159198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11582 GATA1 GATA binding protein 1 (globin transcription factor 1) 639834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11583 GATA4 GATA binding protein 4 367068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11584 GATA6 GATA binding protein 6 254514 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11585 GATAD1 GATA zinc finger domain containing 1 292539 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11586 GATAD2A GATA zinc finger domain containing 2A 813735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11587 GATC glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial) 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11588 GATS 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11589 GBA glucosidase, beta; acid (includes glucosylceramidase) 838578 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11590 GBA2 glucosidase, beta (bile acid) 2 1445964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11591 GBA3 glucosidase, beta, acid 3 (cytosolic) 725010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11592 GBAS glioblastoma amplified sequence 408135 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11593 GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 446667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11594 GBP3 guanylate binding protein 3 926796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11595 GBP4 guanylate binding protein 4 997269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11596 GBX1 gastrulation brain homeobox 1 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11597 GBX2 gastrulation brain homeobox 2 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11598 GC group-specific component (vitamin D binding protein) 746811 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11599 GCA grancalcin, EF-hand calcium binding protein 332085 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11600 GCET2 germinal center expressed transcript 2 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11601 GCFC1 1316679 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11602 GCG glucagon 279864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11603 GCHFR GTP cyclohydrolase I feedback regulator 108498 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11604 GCM1 glial cells missing homolog 1 (Drosophila) 674817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11605 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) 654537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11606 GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) 1558011 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11607 GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type 669747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11608 GCOM1 877617 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11609 GCSH glycine cleavage system protein H (aminomethyl carrier) 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11610 GDA guanine deaminase 656058 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11611 GDAP1L1 ganglioside-induced differentiation-associated protein 1-like 1 355407 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11612 GDAP2 ganglioside induced differentiation associated protein 2 806637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11613 GDE1 glycerophosphodiester phosphodiesterase 1 382785 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11614 GDF10 growth differentiation factor 10 375687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11615 GDF11 growth differentiation factor 11 386841 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11616 GDF15 growth differentiation factor 15 237783 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11617 GDF2 growth differentiation factor 2 605865 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11618 GDF5 growth differentiation factor 5 764556 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11619 GDI2 GDP dissociation inhibitor 2 675831 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11620 GDNF glial cell derived neurotrophic factor 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11621 GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11622 GDPD4 glycerophosphodiester phosphodiesterase domain containing 4 822861 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11623 GEM GTP binding protein overexpressed in skeletal muscle 459342 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11624 GEMIN6 gem (nuclear organelle) associated protein 6 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11625 GEMIN7 gem (nuclear organelle) associated protein 7 202800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11626 GEMIN8 gem (nuclear organelle) associated protein 8 375687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11627 GEN1 Gen homolog 1, endonuclease (Drosophila) 1408953 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11628 GFI1 growth factor independent 1 transcription repressor 272766 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11629 GFI1B growth factor independent 1B transcription repressor 515619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11630 GFOD1 glucose-fructose oxidoreductase domain containing 1 566319 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11631 GFOD2 glucose-fructose oxidoreductase domain containing 2 591162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11632 GFPT1 glutamine-fructose-6-phosphate transaminase 1 1070277 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11633 GFRA1 GDNF family receptor alpha 1 695604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11634 GFRAL GDNF family receptor alpha like 619047 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11635 GGCX gamma-glutamyl carboxylase 1161030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11636 GGH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11637 GGN gametogenetin 577980 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11638 GGNBP2 gametogenetin binding protein 2 1038843 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11639 GGPS1 geranylgeranyl diphosphate synthase 1 463905 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11640 GGT5 gamma-glutamyltransferase 5 464919 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11641 GGT7 gamma-glutamyltransferase 7 806637 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11642 GGTLC1 gamma-glutamyltransferase light chain 1 353886 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11643 GGTLC2 gamma-glutamyltransferase light chain 2 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11644 GH1 growth hormone 1 341718 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11645 GHDC GH3 domain containing 652509 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11646 GHITM growth hormone inducible transmembrane protein 542490 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11647 GHRH growth hormone releasing hormone 173901 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11648 GIF gastric intrinsic factor (vitamin B synthesis) 654030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11649 GIGYF1 GRB10 interacting GYF protein 1 1390701 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11650 GIMAP1 GTPase, IMAP family member 1 347295 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11651 GIMAP5 GTPase, IMAP family member 5 472524 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11652 GINS1 GINS complex subunit 1 (Psf1 homolog) 273780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11653 GINS3 GINS complex subunit 3 (Psf3 homolog) 307749 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11654 GINS4 GINS complex subunit 4 (Sld5 homolog) 354900 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11655 GIP gastric inhibitory polypeptide 237276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11656 GIT2 G protein-coupled receptor kinase interactor 2 1187394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11657 GIYD1 GIY-YIG domain containing 1 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11658 GIYD2 GIY-YIG domain containing 2 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11659 GJA5 gap junction protein, alpha 5, 40kDa 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11660 GJA8 gap junction protein, alpha 8, 50kDa 662142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11661 GJB1 gap junction protein, beta 1, 32kDa 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11662 GJB6 gap junction protein, beta 6, 30kDa 400530 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11663 GJB7 gap junction protein, beta 7, 25kDa 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11664 GJC3 gap junction protein, gamma 3, 30.2kDa 429936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11665 GJD2 gap junction protein, delta 2, 36kDa 493818 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11666 GJD4 gap junction protein, delta 4, 40.1kDa 244374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11667 GK glycerol kinase 894348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11668 GK5 glycerol kinase 5 (putative) 729573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11669 GKAP1 G kinase anchoring protein 1 567840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11670 GKN1 gastrokine 1 316368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11671 GKN2 gastrokine 2 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11672 GLB1L2 galactosidase, beta 1-like 2 906516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11673 GLDC glycine dehydrogenase (decarboxylating) 1472328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11674 GLDN gliomedin 712842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11675 GLIPR1L1 GLI pathogenesis-related 1 like 1 366054 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11676 GLIPR2 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11677 GLIS3 GLIS family zinc finger 3 1285245 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11678 GLMN glomulin, FKBP associated protein 941499 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11679 GLO1 glyoxalase I 248937 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11680 GLOD5 glyoxalase domain containing 5 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11681 GLP1R glucagon-like peptide 1 receptor 630708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11682 GLP2R glucagon-like peptide 2 receptor 867477 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11683 GLRA1 glycine receptor, alpha 1 714870 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11684 GLRA4 glycine receptor, alpha 4 664170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11685 GLRB glycine receptor, beta 775710 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11686 GLRX3 glutaredoxin 3 484692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11687 GLRX5 glutaredoxin 5 92781 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11688 GLS2 glutaminase 2 (liver, mitochondrial) 859365 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11689 GLT6D1 glycosyltransferase 6 domain containing 1 429429 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11690 GLTP glycolipid transfer protein 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11691 GLUD1 glutamate dehydrogenase 1 590148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11692 GLUL glutamate-ammonia ligase (glutamine synthetase) 581022 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11693 GM2A GM2 ganglioside activator 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11694 GMCL1 germ cell-less homolog 1 (Drosophila) 679380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11695 GMEB2 glucocorticoid modulatory element binding protein 2 499902 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11696 GML glycosylphosphatidylinositol anchored molecule like protein 247923 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11697 GMNN geminin, DNA replication inhibitor 331578 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11698 GMPPA GDP-mannose pyrophosphorylase A 664170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11699 GMPPB GDP-mannose pyrophosphorylase B 535899 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11700 GMPR guanosine monophosphate reductase 498381 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11701 GNA11 guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 309777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11702 GNA12 guanine nucleotide binding protein (G protein) alpha 12 430443 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11703 GNA13 guanine nucleotide binding protein (G protein), alpha 13 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11704 GNA14 guanine nucleotide binding protein (G protein), alpha 14 497367 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11705 GNA15 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) 185562 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11706 GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 494325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11707 GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 533364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11708 GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 518154 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11709 GNAT3 guanine nucleotide binding protein, alpha transducing 3 556179 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11710 GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide 532350 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11711 GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 458835 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11712 GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 442611 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11713 GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 536913 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11714 GNB5 guanine nucleotide binding protein (G protein), beta 5 567840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11715 GNG10 guanine nucleotide binding protein (G protein), gamma 10 65910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11716 GNG11 guanine nucleotide binding protein (G protein), gamma 11 116610 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11717 GNG12 guanine nucleotide binding protein (G protein), gamma 12 115089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11718 GNG13 guanine nucleotide binding protein (G protein), gamma 13 27885 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11719 GNG2 guanine nucleotide binding protein (G protein), gamma 2 113568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11720 GNG3 guanine nucleotide binding protein (G protein), gamma 3 119652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11721 GNG4 guanine nucleotide binding protein (G protein), gamma 4 119652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11722 GNG5 guanine nucleotide binding protein (G protein), gamma 5 65910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11723 GNG7 guanine nucleotide binding protein (G protein), gamma 7 65910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11724 GNGT1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 118131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11725 GNGT2 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 110526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11726 GNL1 guanine nucleotide binding protein-like 1 871533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11727 GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 858351 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11728 GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like 917163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11729 GNLY granulysin 237783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11730 GNMT glycine N-methyltransferase 355914 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11731 GNPDA1 glucosamine-6-phosphate deaminase 1 453258 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11732 GNPDA2 glucosamine-6-phosphate deaminase 2 433485 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11733 GNPTG N-acetylglucosamine-1-phosphate transferase, gamma subunit 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11734 GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 147537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11735 GNRHR gonadotropin-releasing hormone receptor 506493 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11736 GNS glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID) 770133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11737 GOLGA2B 228657 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11738 GOLGA6A 614484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11739 GOLGA6B golgi autoantigen, golgin subfamily a, 6B 441597 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11740 GOLGA7 golgi autoantigen, golgin subfamily a, 7 162240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11741 GOLGA7B 219024 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11742 GOLIM4 golgi integral membrane protein 4 995748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11743 GOLM1 golgi membrane protein 1 629694 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11744 GOLPH3L golgi phosphoprotein 3-like 443118 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11745 GOLT1A golgi transport 1 homolog A (S. cerevisiae) 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11746 GOLT1B golgi transport 1 homolog B (S. cerevisiae) 213447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11747 GOPC golgi associated PDZ and coiled-coil motif containing 710307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11748 GORASP1 golgi reassembly stacking protein 1, 65kDa 655044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11749 GORASP2 golgi reassembly stacking protein 2, 55kDa 675324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11750 GOSR1 golgi SNAP receptor complex member 1 385320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11751 GOSR2 golgi SNAP receptor complex member 2 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11752 GOT1 glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) 647946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11753 GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 388362 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11754 GP5 glycoprotein V (platelet) 629187 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11755 GP9 glycoprotein IX (platelet) 214461 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11756 GPA33 glycoprotein A33 (transmembrane) 500916 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11757 GPAA1 glycosylphosphatidylinositol anchor attachment protein 1 homolog (yeast) 824382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11758 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 1301469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11759 GPATCH3 G patch domain containing 3 809172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11760 GPBAR1 G protein-coupled bile acid receptor 1 504972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11761 GPBP1 GC-rich promoter binding protein 1 652509 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11762 GPC4 glypican 4 865449 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11763 GPCPD1 1062165 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11764 GPER G protein-coupled estrogen receptor 1 403572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11765 GPHA2 glycoprotein hormone alpha 2 203814 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11766 GPN1 620061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11767 GPN2 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11768 GPN3 464919 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11769 GPR108 G protein-coupled receptor 108 561756 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11770 GPR111 G protein-coupled receptor 111 992199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11771 GPR114 G protein-coupled receptor 114 638313 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11772 GPR115 G protein-coupled receptor 115 1074840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11773 GPR116 G protein-coupled receptor 116 2089347 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11774 GPR119 G protein-coupled receptor 119 513084 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11775 GPR120 G protein-coupled receptor 120 330564 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11776 GPR124 G protein-coupled receptor 124 1066221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11777 GPR137 G protein-coupled receptor 137 700167 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11778 GPR137C G protein-coupled receptor 137C 486720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11779 GPR141 G protein-coupled receptor 141 467454 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11780 GPR146 G protein-coupled receptor 146 249444 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11781 GPR148 G protein-coupled receptor 148 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11782 GPR149 G protein-coupled receptor 149 1121484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11783 GPR15 G protein-coupled receptor 15 551109 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11784 GPR152 G protein-coupled receptor 152 399009 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11785 GPR157 G protein-coupled receptor 157 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11786 GPR17 G protein-coupled receptor 17 468468 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11787 GPR171 G protein-coupled receptor 171 488748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11788 GPR172B G protein-coupled receptor 172B 691041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11789 GPR174 G protein-coupled receptor 174 510042 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11790 GPR176 G protein-coupled receptor 176 701688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11791 GPR18 G protein-coupled receptor 18 507000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11792 GPR180 G protein-coupled receptor 180 613470 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11793 GPR182 G protein-coupled receptor 182 618033 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11794 GPR183 552630 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11795 GPR19 G protein-coupled receptor 19 634764 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11796 GPR21 G protein-coupled receptor 21 534378 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11797 GPR22 G protein-coupled receptor 22 662142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11798 GPR3 G protein-coupled receptor 3 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11799 GPR37L1 G protein-coupled receptor 37 like 1 728559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11800 GPR39 G protein-coupled receptor 39 694590 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -11801 GPR4 G protein-coupled receptor 4 547053 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11802 GPR45 G protein-coupled receptor 45 568854 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11803 GPR52 G protein-coupled receptor 52 552630 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11804 GPR55 G protein-coupled receptor 55 488748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11805 GPR61 G protein-coupled receptor 61 689520 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11806 GPR65 G protein-coupled receptor 65 516126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11807 GPR68 G protein-coupled receptor 68 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11808 GPR81 G protein-coupled receptor 81 529815 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11809 GPR82 G protein-coupled receptor 82 514605 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11810 GPR85 G protein-coupled receptor 85 566319 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11811 GPR87 G protein-coupled receptor 87 550095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11812 GPR89A G protein-coupled receptor 89A 621075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11813 GPR89B G protein-coupled receptor 89B 220545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11814 GPRC5A G protein-coupled receptor, family C, group 5, member A 550602 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11815 GPRC5B G protein-coupled receptor, family C, group 5, member B 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11816 GPRC5C G protein-coupled receptor, family C, group 5, member C 698646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11817 GPRC5D G protein-coupled receptor, family C, group 5, member D 532350 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11818 GPRIN1 G protein regulated inducer of neurite outgrowth 1 1122498 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11819 GPX1 glutathione peroxidase 1 184548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11820 GPX2 glutathione peroxidase 2 (gastrointestinal) 294567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11821 GPX3 glutathione peroxidase 3 (plasma) 309270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11822 GPX6 glutathione peroxidase 6 (olfactory) 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11823 GPX7 glutathione peroxidase 7 220038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11824 GPX8 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11825 GRAMD3 GRAM domain containing 3 704730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11826 GRAMD4 GRAM domain containing 4 249951 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11827 GRAP2 GRB2-related adaptor protein 2 477087 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11828 GRASP GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11829 GRB14 growth factor receptor-bound protein 14 752388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11830 GRHL1 grainyhead-like 1 (Drosophila) 904995 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11831 GRHPR glyoxylate reductase/hydroxypyruvate reductase 427401 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11832 GRINA glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11833 GRINL1A glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A 510042 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11834 GRIP1 glutamate receptor interacting protein 1 1686789 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11835 GRK5 G protein-coupled receptor kinase 5 899925 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11836 GRK7 G protein-coupled receptor kinase 7 825903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11837 GRM7 glutamate receptor, metabotropic 7 1349127 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11838 GRPEL1 GrpE-like 1, mitochondrial (E. coli) 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11839 GRSF1 G-rich RNA sequence binding factor 1 553644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11840 GRWD1 glutamate-rich WD repeat containing 1 597246 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11841 GSDMA 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11842 GSDMB 632736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11843 GSDMC 800553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11844 GSG1 germ cell associated 1 561249 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11845 GSG1L GSG1-like 326508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11846 GSG2 germ cell associated 2 (haspin) 954681 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11847 GSK3B glycogen synthase kinase 3 beta 684450 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11848 GSR glutathione reductase 664677 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11849 GSTA2 glutathione S-transferase A2 351351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11850 GSTA3 glutathione S-transferase A3 351351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11851 GSTA5 glutathione S-transferase A5 351351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11852 GSTM1 glutathione S-transferase M1 349323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11853 GSTM2 glutathione S-transferase M2 (muscle) 355914 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11854 GSTM3 glutathione S-transferase M3 (brain) 318903 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11855 GSTM4 glutathione S-transferase M4 361998 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11856 GSTM5 glutathione S-transferase M5 349323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11857 GSTO1 glutathione S-transferase omega 1 358956 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11858 GSTP1 glutathione S-transferase pi 269217 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11859 GSTT2 glutathione S-transferase theta 2 260091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11860 GSTT2B glutathione S-transferase theta 2B (gene/pseudogene) 107991 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11861 GSX1 GS homeobox 1 196209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11862 GSX2 GS homeobox 2 202293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11863 GTDC1 glycosyltransferase-like domain containing 1 716391 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11864 GTF2A1 general transcription factor IIA, 1, 19/37kDa 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11865 GTF2A1L general transcription factor IIA, 1-like 752895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11866 GTF2A2 general transcription factor IIA, 2, 12kDa 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11867 GTF2B general transcription factor IIB 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11868 GTF2E1 general transcription factor IIE, polypeptide 1, alpha 56kDa 677352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11869 GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa 702702 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11870 GTF2H1 general transcription factor IIH, polypeptide 1, 62kDa 863421 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11871 GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa 684450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11872 GTF2H2C 967863 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11873 GTF2H2D 967863 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11874 GTF2H3 general transcription factor IIH, polypeptide 3, 34kDa 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11875 GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa 651495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11876 GTF2H5 general transcription factor IIH, polypeptide 5 113568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11877 GTF2I general transcription factor II, i 1175733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11878 GTF2IRD1 GTF2I repeat domain containing 1 1284738 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11879 GTF3A general transcription factor IIIA 451737 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11880 GTF3C2 general transcription factor IIIC, polypeptide 2, beta 110kDa 1398813 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11881 GTF3C6 general transcription factor IIIC, polypeptide 6, alpha 35kDa 306735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11882 GTPBP10 GTP-binding protein 10 (putative) 610428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11883 GTPBP3 GTP binding protein 3 (mitochondrial) 679380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11884 GTPBP5 GTP binding protein 5 (putative) 589134 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11885 GTSF1 gametocyte specific factor 1 269724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11886 GTSF1L gametocyte specific factor 1-like 228657 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11887 GUCA1B guanylate cyclase activator 1B (retina) 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11888 GUCA2A guanylate cyclase activator 2A (guanylin) 142467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11889 GUCA2B guanylate cyclase activator 2B (uroguanylin) 177957 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11890 GUCY1A3 guanylate cyclase 1, soluble, alpha 3 1076868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11891 GUCY1B3 guanylate cyclase 1, soluble, beta 3 928317 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11892 GUK1 guanylate kinase 1 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11893 GXYLT1 572910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11894 GXYLT2 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11895 GYPA glycophorin A (MNS blood group) 232206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11896 GYPC glycophorin C (Gerbich blood group) 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11897 GYPE glycophorin E 126243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11898 GZF1 GDNF-inducible zinc finger protein 1 1072812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11899 GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) 410163 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11900 GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 367068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11901 H1F0 H1 histone family, member 0 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11902 H1FOO H1 histone family, member O, oocyte-specific 247416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11903 H2AFB1 H2A histone family, member B1 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11904 H2AFB3 H2A histone family, member B3 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11905 H2AFJ H2A histone family, member J 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11906 H2AFV H2A histone family, member V 214968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11907 H2AFX H2A histone family, member X 180999 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11908 H2AFY H2A histone family, member Y 631722 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11909 H2AFY2 H2A histone family, member Y2 583557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11910 H3F3A H3 histone, family 3A 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11911 H3F3B H3 histone, family 3B (H3.3B) 154128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11912 H3F3C 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11913 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 354900 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11914 HABP2 hyaluronan binding protein 2 879645 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11915 HABP4 hyaluronan binding protein 4 466947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11916 HACE1 HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 1392222 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11917 HACL1 2-hydroxyacyl-CoA lyase 1 915135 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11918 HADHA hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit 1166607 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11919 HAGH hydroxyacylglutathione hydrolase 170859 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11920 HAND1 heart and neural crest derivatives expressed 1 299637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11921 HAND2 heart and neural crest derivatives expressed 2 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11922 HAPLN1 hyaluronan and proteoglycan link protein 1 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11923 HAPLN4 hyaluronan and proteoglycan link protein 4 189618 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11924 HARBI1 harbinger transposase derived 1 536406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11925 HARS histidyl-tRNA synthetase 802074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11926 HARS2 histidyl-tRNA synthetase 2, mitochondrial (putative) 740727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11927 HAS2 hyaluronan synthase 2 847197 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11928 HAUS1 425373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11929 HAUS2 321945 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11930 HAUS3 926796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11931 HAUS7 432471 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11932 HAVCR2 hepatitis A virus cellular receptor 2 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11933 HAX1 HCLS1 associated protein X-1 440076 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11934 HBB hemoglobin, beta 231192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11935 HBD hemoglobin, delta 231192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11936 HBE1 hemoglobin, epsilon 1 231192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11937 HBEGF heparin-binding EGF-like growth factor 302679 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11938 HBG1 hemoglobin, gamma A 182520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11939 HBG2 hemoglobin, gamma G 231192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11940 HBP1 HMG-box transcription factor 1 803595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11941 HBS1L HBS1-like (S. cerevisiae) 1078389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11942 HBXIP hepatitis B virus x interacting protein 271752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11943 HCCS holocytochrome c synthase (cytochrome c heme-lyase) 421317 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11944 HCK hemopoietic cell kinase 741234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11945 HCST hematopoietic cell signal transducer 113061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11946 HDAC4 histone deacetylase 4 1051518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11947 HDAC5 histone deacetylase 5 1098162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11948 HDAC7 histone deacetylase 7 1091064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11949 HDC histidine decarboxylase 1032759 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11950 HDDC3 HD domain containing 3 163761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11951 HDGF hepatoma-derived growth factor (high-mobility group protein 1-like) 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11952 HDGFL1 hepatoma derived growth factor-like 1 121680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11953 HDGFRP3 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11954 HDHD1A haloacid dehalogenase-like hydrolase domain containing 1A 323466 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11955 HDHD2 haloacid dehalogenase-like hydrolase domain containing 2 407628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11956 HDHD3 haloacid dehalogenase-like hydrolase domain containing 3 385320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11957 HEATR2 HEAT repeat containing 2 810693 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11958 HEATR5B HEAT repeat containing 5B 3222492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11959 HEBP1 heme binding protein 1 260598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11960 HEBP2 heme binding protein 2 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11961 HECA headcase homolog (Drosophila) 696111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11962 HELLS helicase, lymphoid-specific 1302990 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11963 HEMK1 HemK methyltransferase family member 1 535392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11964 HEPACAM hepatocyte cell adhesion molecule 492804 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11965 HEPN1 137397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11966 HERC3 hect domain and RLD 3 1647243 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11967 HERPUD1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 535899 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11968 HERPUD2 HERPUD family member 2 635271 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11969 HES1 hairy and enhancer of split 1, (Drosophila) 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11970 HES3 hairy and enhancer of split 3 (Drosophila) 86697 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11971 HESX1 HESX homeobox 1 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11972 HEXA hexosaminidase A (alpha polypeptide) 834522 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11973 HEXDC hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing 671268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11974 HEXIM1 hexamethylene bis-acetamide inducible 1 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11975 HEXIM2 hexamthylene bis-acetamide inducible 2 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11976 HEY1 hairy/enhancer-of-split related with YRPW motif 1 284934 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11977 HGS hepatocyte growth factor-regulated tyrosine kinase substrate 851760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11978 HHATL hedgehog acyltransferase-like 777231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11979 HHEX hematopoietically expressed homeobox 229164 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -11980 HHIP hedgehog interacting protein 1056588 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11981 HHIPL1 HHIP-like 1 642369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11982 HHLA2 HERV-H LTR-associating 2 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11983 HHLA3 HERV-H LTR-associating 3 182013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11984 HIAT1 hippocampus abundant transcript 1 726531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11985 HIBADH 3-hydroxyisobutyrate dehydrogenase 480636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11986 HIC2 hypermethylated in cancer 2 634764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11987 HIF1A hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 1268514 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -11988 HIGD1A HIG1 domain family, member 1A 172380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11989 HIGD1B HIG1 domain family, member 1B 158184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11990 HIGD1C HIG1 domain family, member 1C 120159 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11991 HIGD2A HIG1 domain family, member 2A 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11992 HINFP 806130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11993 HINT1 histidine triad nucleotide binding protein 1 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11994 HINT2 histidine triad nucleotide binding protein 2 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11995 HIPK3 homeodomain interacting protein kinase 3 1881984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11996 HIRIP3 HIRA interacting protein 3 860886 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11997 HIST1H1A histone cluster 1, H1a 330564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11998 HIST1H2AC histone cluster 1, H2ac 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -11999 HIST1H2AH histone cluster 1, H2ah 198237 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12000 HIST1H2AJ histone cluster 1, H2aj 171366 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12001 HIST1H2AM histone cluster 1, H2am 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12002 HIST1H2BD histone cluster 1, H2bd 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12003 HIST1H2BE histone cluster 1, H2be 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12004 HIST1H2BG histone cluster 1, H2bg 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12005 HIST1H2BH histone cluster 1, H2bh 195195 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12006 HIST1H2BI histone cluster 1, H2bi 195195 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12007 HIST1H2BJ histone cluster 1, H2bj 195195 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12008 HIST1H2BL histone cluster 1, H2bl 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12009 HIST1H2BM histone cluster 1, H2bm 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12010 HIST1H2BN histone cluster 1, H2bn 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12011 HIST1H2BO histone cluster 1, H2bo 195195 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12012 HIST1H3A histone cluster 1, H3a 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12013 HIST1H3E histone cluster 1, H3e 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12014 HIST1H3H histone cluster 1, H3h 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12015 HIST1H4A histone cluster 1, H4a 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12016 HIST1H4B histone cluster 1, H4b 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12017 HIST1H4C histone cluster 1, H4c 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12018 HIST1H4D histone cluster 1, H4d 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12019 HIST1H4E histone cluster 1, H4e 160212 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12020 HIST1H4F histone cluster 1, H4f 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12021 HIST1H4G histone cluster 1, H4g 152607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12022 HIST1H4H histone cluster 1, H4h 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12023 HIST1H4I histone cluster 1, H4i 160212 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12024 HIST1H4K histone cluster 1, H4k 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12025 HIST2H2AB histone cluster 2, H2ab 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12026 HIST2H3D histone cluster 2, H3d 210405 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12027 HIST3H2A histone cluster 3, H2a 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12028 HIST3H2BB histone cluster 3, H2bb 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12029 HIST4H4 histone cluster 4, H4 160212 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12030 HJURP Holliday junction recognition protein 1083459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12031 HK2 hexokinase 2 1311609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12032 HLA-B major histocompatibility complex, class I, B 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12033 HLA-DOA major histocompatibility complex, class II, DO alpha 391404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12034 HLA-DOB major histocompatibility complex, class II, DO beta 428922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12035 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 405093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12036 HLA-DPB1 major histocompatibility complex, class II, DP beta 1 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12037 HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 397488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12038 HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 397488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12039 HLA-DRA major histocompatibility complex, class II, DR alpha 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12040 HM13 histocompatibility (minor) 13 519168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12041 HMBS hydroxymethylbilane synthase 519168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12042 HMG20A high-mobility group 20A 545532 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12043 HMGA1 high mobility group AT-hook 1 161226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12044 HMGA2 high mobility group AT-hook 2 138918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12045 HMGB1 high-mobility group box 1 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12046 HMGB3 high-mobility group box 3 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12047 HMGB4 high-mobility group box 4 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12048 HMGCL 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria) 461877 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12049 HMGCR 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 1390701 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12050 HMGN1 high-mobility group nucleosome binding domain 1 137397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12051 HMGN3 high mobility group nucleosomal binding domain 3 164268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12052 HMGN4 high mobility group nucleosomal binding domain 4 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12053 HMGXB4 935922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12054 HMHB1 histocompatibility (minor) HB-1 47151 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12055 HMMR hyaluronan-mediated motility receptor (RHAMM) 1115400 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12056 HMOX1 heme oxygenase (decycling) 1 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12057 HMOX2 heme oxygenase (decycling) 2 446667 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12058 HMP19 269724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12059 HMSD histocompatibility (minor) serpin domain containing 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12060 HN1 hematological and neurological expressed 1 265668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12061 HN1L hematological and neurological expressed 1-like 276315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12062 HNF4G hepatocyte nuclear factor 4, gamma 698646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12063 HNMT histamine N-methyltransferase 568347 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12064 HNRNPA1L2 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12065 HNRNPAB 412698 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12066 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12067 HNRNPK 755430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12068 HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 988143 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12069 HNRNPUL2 923754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12070 HNRPLL heterogeneous nuclear ribonucleoprotein L-like 754416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12071 HORMAD2 HORMA domain containing 2 425880 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12072 HOXA10 homeobox A10 239304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12073 HOXA11 homeobox A11 343746 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12074 HOXA2 homeobox A2 471003 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12075 HOXA6 homeobox A6 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12076 HOXA9 homeobox A9 182520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12077 HOXB1 homeobox B1 463398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12078 HOXB13 homeobox B13 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12079 HOXB4 homeobox B4 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12080 HOXB5 homeobox B5 414726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12081 HOXB6 homeobox B6 246909 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12082 HOXB7 homeobox B7 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12083 HOXB9 homeobox B9 374673 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12084 HOXC10 homeobox C10 514605 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12085 HOXC11 homeobox C11 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12086 HOXC13 homeobox C13 178971 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12087 HOXC4 homeobox C4 389883 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12088 HOXC5 homeobox C5 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12089 HOXC6 homeobox C6 363012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12090 HOXC8 homeobox C8 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12091 HOXC9 homeobox C9 283413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12092 HOXD1 homeobox D1 246402 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12093 HOXD10 homeobox D10 522717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12094 HOXD12 homeobox D12 255528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12095 HOXD13 homeobox D13 319917 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12096 HOXD4 homeobox D4 307749 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12097 HOXD9 homeobox D9 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12098 HPCA hippocalcin 296595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12099 HPCAL4 hippocalcin like 4 298116 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12100 HPGD hydroxyprostaglandin dehydrogenase 15-(NAD) 371124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12101 HPGDS 314340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12102 HPN hepsin (transmembrane protease, serine 1) 520689 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12103 HPR haptoglobin-related protein 540969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12104 HPRT1 hypoxanthine phosphoribosyltransferase 1 (Lesch-Nyhan syndrome) 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12105 HPX hemopexin 724503 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12106 HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog 177450 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12107 HRASLS2 HRAS-like suppressor 2 256035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12108 HRASLS5 HRAS-like suppressor family, member 5 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12109 HRH1 histamine receptor H1 744276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12110 HS1BP3 HCLS1 binding protein 3 529308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12111 HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12112 HS3ST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12113 HS3ST4 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 324987 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12114 HS3ST6 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 221559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12115 HSBP1 heat shock factor binding protein 1 98358 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12116 HSCB HscB iron-sulfur cluster co-chaperone homolog (E. coli) 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12117 HSD11B1 hydroxysteroid (11-beta) dehydrogenase 1 457821 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12118 HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2 491283 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12119 HSD17B11 hydroxysteroid (17-beta) dehydrogenase 11 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12120 HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 497874 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12121 HSD17B14 hydroxysteroid (17-beta) dehydrogenase 14 350844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12122 HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 494325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12123 HSD17B6 hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse) 491790 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12124 HSD17B7 hydroxysteroid (17-beta) dehydrogenase 7 518661 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12125 HSD17B8 hydroxysteroid (17-beta) dehydrogenase 8 342225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12126 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 574938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12127 HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 529308 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12128 HSDL1 hydroxysteroid dehydrogenase like 1 511563 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12129 HSF2BP heat shock transcription factor 2 binding protein 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12130 HSF4 heat shock transcription factor 4 348816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12131 HSH2D hematopoietic SH2 domain containing 492297 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12132 HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 1232517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12133 HSPA12B heat shock 70kD protein 12B 475566 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12134 HSPA1L heat shock 70kDa protein 1-like 978510 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12135 HSPA4L heat shock 70kDa protein 4-like 1259895 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12136 HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 1004874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12137 HSPA6 heat shock 70kDa protein 6 (HSP70B') 750867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12138 HSPB11 230685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12139 HSPB2 heat shock 27kDa protein 2 232713 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12140 HSPB3 heat shock 27kDa protein 3 231699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12141 HSPB7 heat shock 27kDa protein family, member 7 (cardiovascular) 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12142 HSPB8 heat shock 22kDa protein 8 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12143 HSPB9 heat shock protein, alpha-crystallin-related, B9 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12144 HSPBP1 208377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12145 HSPC159 252993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12146 HSPE1 heat shock 10kDa protein 1 (chaperonin 10) 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12147 HTATIP2 HIV-1 Tat interactive protein 2, 30kDa 429936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12148 HTN1 histatin 1 96330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12149 HTN3 histatin 3 87204 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12150 HTR1D 5-hydroxytryptamine (serotonin) receptor 1D 576966 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12151 HTR3B 5-hydroxytryptamine (serotonin) receptor 3B 690534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12152 HTR3C 5-hydroxytryptamine (serotonin) receptor 3, family member C 699660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12153 HTR3D 5-hydroxytryptamine (serotonin) receptor 3 family member D 468975 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12154 HTR4 5-hydroxytryptamine (serotonin) receptor 4 753909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12155 HTR6 5-hydroxytryptamine (serotonin) receptor 6 512070 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12156 HTR7 5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled) 639834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12157 HTRA1 HtrA serine peptidase 1 508521 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12158 HTRA2 HtrA serine peptidase 2 625638 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12159 HTRA3 HtrA serine peptidase 3 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12160 HTRA4 HtrA serine peptidase 4 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12161 HUS1 HUS1 checkpoint homolog (S. pombe) 442104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12162 HUS1B HUS1 checkpoint homolog b (S. pombe) 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12163 HVCN1 hydrogen voltage-gated channel 1 428922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12164 HYAL1 hyaluronoglucosaminidase 1 610428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12165 HYAL3 hyaluronoglucosaminidase 3 641862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12166 HYI hydroxypyruvate isomerase homolog (E. coli) 277329 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12167 IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 346788 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12168 IBSP integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II) 495846 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12169 IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase 2116218 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12170 ICAM1 intercellular adhesion molecule 1 (CD54), human rhinovirus receptor 824889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12171 ICAM2 intercellular adhesion molecule 2 407121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12172 ICAM3 intercellular adhesion molecule 3 648453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12173 ICAM4 intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) 405093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12174 ICAM5 intercellular adhesion molecule 5, telencephalin 892827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12175 ICOS inducible T-cell co-stimulator 314340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12176 ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 217503 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12177 ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 186576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12178 IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 592683 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12179 IDH3B isocitrate dehydrogenase 3 (NAD+) beta 692562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12180 IDI2 isopentenyl-diphosphate delta isomerase 2 354900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12181 IDO2 554151 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12182 IER2 immediate early response 2 130806 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12183 IER3 immediate early response 3 158691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12184 IER3IP1 immediate early response 3 interacting protein 1 84162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12185 IER5 immediate early response 5 148551 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12186 IFFO1 772161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12187 IFI27 interferon, alpha-inducible protein 27 189111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12188 IFI27L1 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12189 IFI27L2 207363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12190 IFI6 interferon, alpha-inducible protein 6 128271 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12191 IFIT1 interferon-induced protein with tetratricopeptide repeats 1 732615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12192 IFIT1B 726531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12193 IFIT3 interferon-induced protein with tetratricopeptide repeats 3 755430 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12194 IFITM2 interferon induced transmembrane protein 2 (1-8D) 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12195 IFNA1 interferon, alpha 1 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12196 IFNA13 interferon, alpha 13 292539 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12197 IFNA16 interferon, alpha 16 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12198 IFNA17 interferon, alpha 17 291018 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12199 IFNA21 interferon, alpha 21 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12200 IFNA5 interferon, alpha 5 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12201 IFNA6 interferon, alpha 6 290004 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12202 IFNA7 interferon, alpha 7 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12203 IFNA8 interferon, alpha 8 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12204 IFNAR1 interferon (alpha, beta and omega) receptor 1 830466 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12205 IFNG interferon, gamma 262119 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12206 IFNGR1 interferon gamma receptor 1 714363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12207 IFNGR2 interferon gamma receptor 2 (interferon gamma transducer 1) 489255 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12208 IFNW1 interferon, omega 1 300144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12209 IFT20 intraflagellar transport 20 homolog (Chlamydomonas) 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12210 IFT27 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12211 IFT46 563784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12212 IFT52 intraflagellar transport 52 homolog (Chlamydomonas) 692562 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12213 IFT57 intraflagellar transport 57 homolog (Chlamydomonas) 566826 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12214 IGDCC4 1533168 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12215 IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 851253 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12216 IGFBP1 insulin-like growth factor binding protein 1 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12217 IGFBP2 insulin-like growth factor binding protein 2, 36kDa 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12218 IGFBP4 insulin-like growth factor binding protein 4 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12219 IGFBP5 insulin-like growth factor binding protein 5 250458 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12220 IGFBP6 insulin-like growth factor binding protein 6 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12221 IGFBP7 insulin-like growth factor binding protein 7 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12222 IGFBPL1 insulin-like growth factor binding protein-like 1 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12223 IGFL1 IGF-like family member 1 176943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12224 IGFL3 IGF-like family member 3 199758 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12225 IGHMBP2 immunoglobulin mu binding protein 2 1272570 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12226 IGJ immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12227 IGLL1 immunoglobulin lambda-like polypeptide 1 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12228 IGLL5 226629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12229 IGSF11 immunoglobulin superfamily, member 11 669747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12230 IGSF21 immunoglobin superfamily, member 21 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12231 IGSF6 immunoglobulin superfamily, member 6 380250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12232 IGSF9 immunoglobulin superfamily, member 9 1768416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12233 IGSF9B immunoglobulin superfamily, member 9B 1837368 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12234 IHH Indian hedgehog homolog (Drosophila) 469482 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12235 IK IK cytokine, down-regulator of HLA II 863421 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12236 IKBIP 873561 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12237 IKZF3 IKAROS family zinc finger 3 (Aiolos) 791427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12238 IKZF5 IKAROS family zinc finger 5 (Pegasus) 644904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12239 IL10 interleukin 10 282399 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12240 IL12RB2 interleukin 12 receptor, beta 2 1343043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12241 IL13 interleukin 13 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12242 IL15RA interleukin 15 receptor, alpha 375180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12243 IL16 interleukin 16 (lymphocyte chemoattractant factor) 2060448 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12244 IL17A interleukin 17A 243360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12245 IL17F interleukin 17F 255528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12246 IL17RD interleukin 17 receptor D 1036308 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -12247 IL18 interleukin 18 (interferon-gamma-inducing factor) 295581 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12248 IL18BP interleukin 18 binding protein 324480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12249 IL19 interleukin 19 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12250 IL1B interleukin 1, beta 422838 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12251 IL1F10 interleukin 1 family, member 10 (theta) 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12252 IL1F7 interleukin 1 family, member 7 (zeta) 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12253 IL1F8 interleukin 1 family, member 8 (eta) 371124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12254 IL1F9 interleukin 1 family, member 9 266682 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12255 IL1RAPL1 interleukin 1 receptor accessory protein-like 1 1080417 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12256 IL1RL1 interleukin 1 receptor-like 1 876096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12257 IL20 interleukin 20 279357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12258 IL20RA interleukin 20 receptor, alpha 810186 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12259 IL23A interleukin 23, alpha subunit p19 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12260 IL24 interleukin 24 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12261 IL26 interleukin 26 271752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12262 IL28A interleukin 28A (interferon, lambda 2) 317889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12263 IL29 interleukin 29 (interferon, lambda 1) 315861 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12264 IL2RA interleukin 2 receptor, alpha 431457 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12265 IL2RB interleukin 2 receptor, beta 811200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12266 IL3 interleukin 3 (colony-stimulating factor, multiple) 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12267 IL31 interleukin 31 257049 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12268 IL31RA interleukin 31 receptor A 1193985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12269 IL32 interleukin 32 299637 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12270 IL4 interleukin 4 242346 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12271 IL4I1 interleukin 4 induced 1 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12272 IL4R interleukin 4 receptor 1274598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12273 IL5 interleukin 5 (colony-stimulating factor, eosinophil) 213447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12274 IL7 interleukin 7 275808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12275 IL7R interleukin 7 receptor 715884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12276 IL8 interleukin 8 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12277 IL9 interleukin 9 230685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12278 IL9R interleukin 9 receptor 707772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12279 ILDR1 immunoglobulin-like domain containing receptor 1 762021 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12280 ILDR2 653016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12281 IMMP1L IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12282 IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12283 IMP3 IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) 90753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12284 IMP5 1043913 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12285 IMPA2 inositol(myo)-1(or 4)-monophosphatase 2 377208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12286 IMPACT Impact homolog (mouse) 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12287 IMPAD1 inositol monophosphatase domain containing 1 359463 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12288 INCA1 372645 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12289 ING1 inhibitor of growth family, member 1 408135 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12290 ING2 inhibitor of growth family, member 2 342225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12291 ING3 inhibitor of growth family, member 3 669747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12292 INHA inhibin, alpha 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12293 INHBB inhibin, beta B 392925 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12294 INO80B 369096 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12295 INO80C 303693 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12296 INO80D 1564095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12297 INO80E 167310 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12298 INPP1 inositol polyphosphate-1-phosphatase 618540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12299 INPP5A inositol polyphosphate-5-phosphatase, 40kDa 463905 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12300 INPP5J 480129 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12301 INS-IGF2 INS-IGF2 113568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12302 INSC inscuteable homolog (Drosophila) 892320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12303 INSIG1 insulin induced gene 1 329550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12304 INSL4 insulin-like 4 (placenta) 216996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12305 INSL5 insulin-like 5 210912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12306 INSL6 insulin-like 6 329550 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12307 INSM2 insulinoma-associated 2 438048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12308 INTS6 integrator complex subunit 6 1331889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12309 INTS9 integrator complex subunit 9 1028196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12310 INVS inversin 1653834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12311 IP6K1 682422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12312 IPO11 importin 11 1546350 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12313 IPO4 importin 4 1470300 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12314 IPO7 importin 7 1586403 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12315 IPPK inositol 1,3,4,5,6-pentakisphosphate 2-kinase 642369 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12316 IQCC IQ motif containing C 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12317 IQCF2 IQ motif containing F2 257049 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12318 IQCF3 IQ motif containing F3 241839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12319 IQCJ IQ motif containing J 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12320 IQCK IQ motif containing K 362505 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12321 IRAK1BP1 interleukin-1 receptor-associated kinase 1 binding protein 1 375180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12322 IREB2 iron-responsive element binding protein 2 1499199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12323 IRF1 interferon regulatory factor 1 513084 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12324 IRF2 interferon regulatory factor 2 548574 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12325 IRF4 interferon regulatory factor 4 590655 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12326 IRF5 interferon regulatory factor 5 799032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12327 IRF8 interferon regulatory factor 8 612963 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12328 IRGQ immunity-related GTPase family, Q 728052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12329 IRX1 iroquois homeobox 1 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12330 IRX3 iroquois homeobox 3 310791 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12331 IRX5 iroquois homeobox 5 364533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12332 IRX6 iroquois homeobox 6 566826 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12333 ISCA1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) 162747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12334 ISCA1P1 206349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12335 ISCA2 iron-sulfur cluster assembly 2 homolog (S. cerevisiae) 155142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12336 ISCU iron-sulfur cluster scaffold homolog (E. coli) 227643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12337 ISG15 ISG15 ubiquitin-like modifier 243867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12338 ISG20 interferon stimulated exonuclease gene 20kDa 282906 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12339 ISG20L2 interferon stimulated exonuclease gene 20kDa-like 2 544518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12340 ISL2 ISL LIM homeobox 2 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12341 ISM1 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12342 ISOC1 isochorismatase domain containing 1 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12343 ISX intestine-specific homeobox 311805 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12344 ISY1 ISY1 splicing factor homolog (S. cerevisiae) 453765 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12345 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 1359267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12346 ITFG2 integrin alpha FG-GAP repeat containing 2 705744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12347 ITFG3 integrin alpha FG-GAP repeat containing 3 562263 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12348 ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 1534689 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12349 ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 1622907 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12350 ITGA9 integrin, alpha 9 1536717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12351 ITGAE integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) 1705548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12352 ITGB1BP1 integrin beta 1 binding protein 1 317889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12353 ITGB6 integrin, beta 6 1230489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12354 ITGB7 integrin, beta 7 1164072 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12355 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) 662649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12356 ITIH2 inter-alpha (globulin) inhibitor H2 1482975 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12357 ITM2B integral membrane protein 2B 356928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12358 ITM2C integral membrane protein 2C 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12359 ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 312312 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12360 ITPR2 inositol 1,4,5-triphosphate receptor, type 2 4225338 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -12361 ITPRIPL1 866970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12362 ITPRIPL2 529308 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12363 IVD isovaleryl Coenzyme A dehydrogenase 594204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12364 IVL involucrin 492804 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12365 IYD iodotyrosine deiodinase 451230 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12366 IZUMO1 izumo sperm-egg fusion 1 552123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12367 JAKMIP1 janus kinase and microtubule interacting protein 1 870519 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12368 JAKMIP3 janus kinase and microtubule interacting protein 3 410163 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12369 JAM2 junctional adhesion molecule 2 439062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12370 JAM3 junctional adhesion molecule 3 450723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12371 JAZF1 JAZF zinc finger 1 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12372 JDP2 Jun dimerization protein 2 266175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12373 JKAMP 484692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12374 JMJD1C jumonji domain containing 1C 3859284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12375 JMJD4 jumonji domain containing 4 191646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12376 JMJD6 jumonji domain containing 6 582036 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12377 JMJD7 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12378 JMJD7-PLA2G4B 1487538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12379 JMY 1129596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12380 JOSD1 Josephin domain containing 1 316875 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12381 JPH2 junctophilin 2 552123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12382 JPH3 junctophilin 3 396474 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12383 JPH4 junctophilin 4 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12384 JRKL jerky homolog-like (mouse) 639327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12385 JUB jub, ajuba homolog (Xenopus laevis) 492804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12386 JUP junction plakoglobin 1020084 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12387 KAL1 Kallmann syndrome 1 sequence 957216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12388 KANK1 KN motif and ankyrin repeat domains 1 2080221 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12389 KARS lysyl-tRNA synthetase 920205 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12390 KAT2A 1080417 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12391 KAT2B 1147848 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12392 KAT5 762528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12393 KATNA1 katanin p60 (ATPase-containing) subunit A 1 768612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12394 KATNAL1 katanin p60 subunit A-like 1 767091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12395 KATNAL2 katanin p60 subunit A-like 2 738699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12396 KAZALD1 Kazal-type serine peptidase inhibitor domain 1 210912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12397 KBTBD12 951639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12398 KBTBD2 kelch repeat and BTB (POZ) domain containing 2 955188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12399 KBTBD3 kelch repeat and BTB (POZ) domain containing 3 936429 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12400 KBTBD6 kelch repeat and BTB (POZ) domain containing 6 1028703 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12401 KBTBD7 kelch repeat and BTB (POZ) domain containing 7 1043913 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12402 KCMF1 potassium channel modulatory factor 1 585078 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12403 KCNA3 potassium voltage-gated channel, shaker-related subfamily, member 3 727038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12404 KCNAB2 potassium voltage-gated channel, shaker-related subfamily, beta member 2 290004 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12405 KCNAB3 potassium voltage-gated channel, shaker-related subfamily, beta member 3 456300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12406 KCNB1 potassium voltage-gated channel, Shab-related subfamily, member 1 1221870 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12407 KCNC1 potassium voltage-gated channel, Shaw-related subfamily, member 1 660114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12408 KCNC3 potassium voltage-gated channel, Shaw-related subfamily, member 3 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12409 KCNC4 potassium voltage-gated channel, Shaw-related subfamily, member 4 926289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12410 KCND3 potassium voltage-gated channel, Shal-related subfamily, member 3 1009437 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12411 KCNE1 potassium voltage-gated channel, Isk-related family, member 1 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12412 KCNE1L KCNE1-like 137397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12413 KCNE3 potassium voltage-gated channel, Isk-related family, member 3 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12414 KCNE4 potassium voltage-gated channel, Isk-related family, member 4 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12415 KCNF1 potassium voltage-gated channel, subfamily F, member 1 612963 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12416 KCNG3 potassium voltage-gated channel, subfamily G, member 3 329550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12417 KCNG4 potassium voltage-gated channel, subfamily G, member 4 725010 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12418 KCNIP2 Kv channel interacting protein 2 440583 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12419 KCNIP3 Kv channel interacting protein 3, calsenilin 327522 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12420 KCNJ11 potassium inwardly-rectifying channel, subfamily J, member 11 595725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12421 KCNJ13 potassium inwardly-rectifying channel, subfamily J, member 13 553137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12422 KCNJ14 potassium inwardly-rectifying channel, subfamily J, member 14 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12423 KCNJ16 potassium inwardly-rectifying channel, subfamily J, member 16 639327 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12424 KCNJ5 potassium inwardly-rectifying channel, subfamily J, member 5 642876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12425 KCNJ8 potassium inwardly-rectifying channel, subfamily J, member 8 650481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12426 KCNJ9 potassium inwardly-rectifying channel, subfamily J, member 9 301158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12427 KCNK1 potassium channel, subfamily K, member 1 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12428 KCNK10 potassium channel, subfamily K, member 10 890799 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12429 KCNK15 potassium channel, subfamily K, member 15 242853 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12430 KCNK16 potassium channel, subfamily K, member 16 501930 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12431 KCNK17 potassium channel, subfamily K, member 17 394446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12432 KCNK6 potassium channel, subfamily K, member 6 323973 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12433 KCNMB1 potassium large conductance calcium-activated channel, subfamily M, beta member 1 298116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12434 KCNMB3 potassium large conductance calcium-activated channel, subfamily M beta member 3 498888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12435 KCNMB4 potassium large conductance calcium-activated channel, subfamily M, beta member 4 190125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12436 KCNN1 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12437 KCNN4 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 613470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12438 KCNQ1 potassium voltage-gated channel, KQT-like subfamily, member 1 444132 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12439 KCNQ4 potassium voltage-gated channel, KQT-like subfamily, member 4 610428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12440 KCNRG potassium channel regulator 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12441 KCNS1 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 260091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12442 KCNV2 potassium channel, subfamily V, member 2 599781 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12443 KCTD11 potassium channel tetramerisation domain containing 11 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12444 KCTD13 potassium channel tetramerisation domain containing 13 464919 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12445 KCTD15 potassium channel tetramerisation domain containing 15 249951 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12446 KCTD16 potassium channel tetramerisation domain containing 16 656565 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12447 KCTD17 potassium channel tetramerisation domain containing 17 231192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12448 KCTD2 potassium channel tetramerisation domain containing 2 239811 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12449 KCTD4 potassium channel tetramerisation domain containing 4 397488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12450 KCTD5 potassium channel tetramerisation domain containing 5 173394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12451 KCTD6 potassium channel tetramerisation domain containing 6 366054 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12452 KCTD8 potassium channel tetramerisation domain containing 8 235755 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12453 KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 785343 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12454 KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 2 684450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12455 KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 266175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12456 KDELR2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 374673 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12457 KDM1A 1164072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12458 KDM1B 931359 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12459 KDM4B 522210 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12460 KDM5C 2359578 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12461 KDSR 3-ketodihydrosphingosine reductase 469989 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12462 KEL Kell blood group, metallo-endopeptidase 1153425 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12463 KERA keratocan 540969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12464 KHDC1 KH homology domain containing 1 252486 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12465 KHNYN 943020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12466 KIAA0020 KIAA0020 1021605 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12467 KIAA0101 KIAA0101 191139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12468 KIAA0174 KIAA0174 567333 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12469 KIAA0196 KIAA0196 1821144 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12470 KIAA0317 KIAA0317 1289808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12471 KIAA0355 KIAA0355 1565109 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12472 KIAA0391 KIAA0391 902460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12473 KIAA0406 KIAA0406 1641666 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12474 KIAA0415 KIAA0415 345267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12475 KIAA0513 KIAA0513 514098 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12476 KIAA0649 KIAA0649 1381068 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12477 KIAA0664 KIAA0664 595218 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12478 KIAA0748 KIAA0748 794469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12479 KIAA0892 KIAA0892 740220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12480 KIAA0895L 563784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12481 KIAA1161 KIAA1161 892320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12482 KIAA1211 1457625 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12483 KIAA1244 KIAA1244 2879253 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12484 KIAA1324 KIAA1324 1507311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12485 KIAA1328 KIAA1328 823368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12486 KIAA1430 KIAA1430 801060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12487 KIAA1467 KIAA1467 953160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12488 KIAA1468 KIAA1468 1650285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12489 KIAA1486 892320 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12490 KIAA1598 KIAA1598 960765 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12491 KIAA1609 KIAA1609 700167 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12492 KIAA1704 KIAA1704 534885 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12493 KIAA1712 KIAA1712 598767 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12494 KIAA1737 KIAA1737 614484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12495 KIAA1826 KIAA1826 530322 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12496 KIAA1949 KIAA1949 874068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12497 KIAA1967 KIAA1967 1033773 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12498 KIF15 kinesin family member 15 2183649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12499 KIF18B kinesin family member 18B 640848 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -12500 KIF20A kinesin family member 20A 1391715 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12501 KIF21A kinesin family member 21A 2578602 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12502 KIF23 kinesin family member 23 1500720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12503 KIF25 kinesin family member 25 505986 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12504 KIF3B kinesin family member 3B 1153932 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12505 KIF6 kinesin family member 6 1258374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12506 KIF9 kinesin family member 9 1243671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12507 KIN KIN, antigenic determinant of recA protein homolog (mouse) 625638 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12508 KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 547053 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12509 KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 675831 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12510 KIRREL3 kin of IRRE like 3 (Drosophila) 937443 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12511 KLB klotho beta 1480947 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12512 KLC1 kinesin light chain 1 898404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12513 KLC3 kinesin light chain 3 555165 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12514 KLF1 Kruppel-like factor 1 (erythroid) 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12515 KLF10 Kruppel-like factor 10 719433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12516 KLF11 Kruppel-like factor 11 764556 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12517 KLF12 Kruppel-like factor 12 627159 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12518 KLF5 Kruppel-like factor 5 (intestinal) 570375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12519 KLF8 Kruppel-like factor 8 559728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12520 KLF9 Kruppel-like factor 9 322452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12521 KLHDC2 kelch domain containing 2 565812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12522 KLHDC5 kelch domain containing 5 623610 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12523 KLHDC8A kelch domain containing 8A 533871 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12524 KLHL10 kelch-like 10 (Drosophila) 936429 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12525 KLHL12 kelch-like 12 (Drosophila) 855309 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12526 KLHL13 kelch-like 13 (Drosophila) 1011972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12527 KLHL2 kelch-like 2, Mayven (Drosophila) 918684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12528 KLHL22 kelch-like 22 (Drosophila) 772161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12529 KLHL3 kelch-like 3 (Drosophila) 924768 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12530 KLHL31 kelch-like 31 (Drosophila) 796497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12531 KLHL32 kelch-like 32 (Drosophila) 964821 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12532 KLHL34 kelch-like 34 (Drosophila) 270231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12533 KLHL36 457821 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12534 KLHL8 kelch-like 8 (Drosophila) 962793 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12535 KLHL9 kelch-like 9 (Drosophila) 942006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12536 KLK1 kallikrein 1 410163 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12537 KLK10 kallikrein-related peptidase 10 176943 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12538 KLK11 kallikrein-related peptidase 11 459849 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12539 KLK13 kallikrein-related peptidase 13 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12540 KLK14 kallikrein-related peptidase 14 244374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12541 KLK3 kallikrein-related peptidase 3 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12542 KLK4 kallikrein-related peptidase 4 365040 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12543 KLK6 kallikrein-related peptidase 6 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12544 KLK9 kallikrein-related peptidase 9 310284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12545 KLRB1 killer cell lectin-like receptor subfamily B, member 1 355914 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12546 KLRC4 killer cell lectin-like receptor subfamily C, member 4 249951 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12547 KLRD1 killer cell lectin-like receptor subfamily D, member 1 285948 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12548 KLRF1 killer cell lectin-like receptor subfamily F, member 1 366561 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12549 KLRG1 killer cell lectin-like receptor subfamily G, member 1 299130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12550 KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) 771147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12551 KNCN kinocilin 118638 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12552 KNDC1 kinase non-catalytic C-lobe domain (KIND) containing 1 1192971 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12553 KPNA1 karyopherin alpha 1 (importin alpha 5) 846183 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12554 KPNA3 karyopherin alpha 3 (importin alpha 4) 791427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12555 KPNA6 karyopherin alpha 6 (importin alpha 7) 845169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12556 KPTN kaptin (actin binding protein) 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12557 KRBA2 KRAB-A domain containing 2 753909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12558 KRCC1 lysine-rich coiled-coil 1 397488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12559 KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) 601302 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12560 KRT10 keratin 10 (epidermolytic hyperkeratosis; keratosis palmaris et plantaris) 759993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12561 KRT12 keratin 12 (Meesmann corneal dystrophy) 722475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12562 KRT13 keratin 13 642876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12563 KRT16 keratin 16 (focal non-epidermolytic palmoplantar keratoderma) 666705 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12564 KRT20 keratin 20 662142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12565 KRT23 keratin 23 (histone deacetylase inducible) 601809 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12566 KRT24 keratin 24 811200 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12567 KRT26 keratin 26 729573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12568 KRT27 keratin 27 635778 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12569 KRT31 keratin 31 628680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12570 KRT32 keratin 32 596232 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12571 KRT33B keratin 33B 630201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12572 KRT38 keratin 38 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12573 KRT5 keratin 5 (epidermolysis bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne types) 916656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12574 KRT6B keratin 6B 877617 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12575 KRT7 keratin 7 725010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12576 KRT73 keratin 73 841113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12577 KRT74 keratin 74 824382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12578 KRT75 keratin 75 857844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12579 KRT76 keratin 76 934401 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12580 KRT77 keratin 77 879645 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12581 KRT78 keratin 78 757458 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12582 KRT79 keratin 79 833508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12583 KRT8 keratin 8 751374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12584 KRTAP10-1 keratin associated protein 10-1 382278 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12585 KRTAP10-10 keratin associated protein 10-10 385320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12586 KRTAP10-12 keratin associated protein 10-12 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12587 KRTAP10-3 keratin associated protein 10-3 339690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12588 KRTAP10-6 keratin associated protein 10-6 558714 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12589 KRTAP10-9 keratin associated protein 10-9 447681 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12590 KRTAP11-1 keratin associated protein 11-1 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12591 KRTAP12-1 keratin associated protein 12-1 149565 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12592 KRTAP12-2 keratin associated protein 12-2 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12593 KRTAP12-3 keratin associated protein 12-3 149565 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12594 KRTAP12-4 keratin associated protein 12-4 51714 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12595 KRTAP13-1 keratin associated protein 13-1 265161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12596 KRTAP13-2 keratin associated protein 13-2 269724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12597 KRTAP13-3 keratin associated protein 13-3 265161 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12598 KRTAP15-1 keratin associated protein 15-1 211926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12599 KRTAP19-1 keratin associated protein 19-1 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12600 KRTAP19-2 keratin associated protein 19-2 82641 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12601 KRTAP19-3 keratin associated protein 19-3 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12602 KRTAP19-4 keratin associated protein 19-4 131313 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12603 KRTAP19-5 keratin associated protein 19-5 113061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12604 KRTAP19-7 keratin associated protein 19-7 99372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12605 KRTAP19-8 keratin associated protein 19-8 99372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12606 KRTAP20-1 keratin associated protein 20-1 88725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12607 KRTAP20-2 keratin associated protein 20-2 102414 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12608 KRTAP21-1 keratin associated protein 21-1 123708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12609 KRTAP21-2 keratin associated protein 21-2 129792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12610 KRTAP22-1 keratin associated protein 22-1 76557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12611 KRTAP23-1 keratin associated protein 23-1 102414 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12612 KRTAP26-1 keratin associated protein 26-1 322959 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12613 KRTAP27-1 keratin associated protein 27-1 318396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12614 KRTAP4-1 keratin associated protein 4-1 155649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12615 KRTAP4-3 keratin associated protein 4-3 251979 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12616 KRTAP4-4 keratin associated protein 4-4 256035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12617 KRTAP4-5 keratin associated protein 4-5 215475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12618 KRTAP5-1 keratin associated protein 5-1 426387 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12619 KRTAP5-11 keratin associated protein 5-11 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12620 KRTAP5-2 keratin associated protein 5-2 272766 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12621 KRTAP5-3 keratin associated protein 5-3 365547 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12622 KRTAP5-6 keratin associated protein 5-6 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12623 KRTAP5-7 keratin associated protein 5-7 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12624 KRTAP5-8 keratin associated protein 5-8 287976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12625 KRTAP5-9 keratin associated protein 5-9 260598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12626 KRTAP6-2 keratin associated protein 6-2 97851 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12627 KRTAP6-3 keratin associated protein 6-3 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12628 KRTAP8-1 keratin associated protein 8-1 99372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12629 KRTAP9-2 keratin associated protein 9-2 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12630 KRTAP9-3 keratin associated protein 9-3 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12631 KRTAP9-4 keratin associated protein 9-4 237783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12632 KRTAP9-8 keratin associated protein 9-8 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12633 KRTCAP2 keratinocyte associated protein 2 246909 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12634 KRTCAP3 keratinocyte associated protein 3 350337 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12635 KRTDAP keratinocyte differentiation-associated protein 164268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12636 KSR1 kinase suppressor of ras 1 773175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12637 KTELC1 KTEL (Lys-Tyr-Glu-Leu) containing 1 574938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12638 LACE1 lactation elevated 1 686985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12639 LACRT lacritin 221559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12640 LACTB2 lactamase, beta 2 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12641 LAD1 ladinin 1 771654 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12642 LAG3 lymphocyte-activation gene 3 659607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12643 LAGE3 L antigen family, member 3 127764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12644 LAIR1 leukocyte-associated immunoglobulin-like receptor 1 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12645 LAIR2 leukocyte-associated immunoglobulin-like receptor 2 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12646 LALBA lactalbumin, alpha- 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12647 LAMP1 lysosomal-associated membrane protein 1 621075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12648 LAMP3 lysosomal-associated membrane protein 3 619554 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12649 LANCL3 LanC lantibiotic synthetase component C-like 3 (bacterial) 309270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12650 LAP3 leucine aminopeptidase 3 763542 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12651 LAPTM4A lysosomal-associated protein transmembrane 4 alpha 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12652 LAPTM4B lysosomal associated protein transmembrane 4 beta 320424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12653 LARP4 La ribonucleoprotein domain family, member 4 1137201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12654 LARP6 La ribonucleoprotein domain family, member 6 694590 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12655 LARS leucyl-tRNA synthetase 1855113 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12656 LASS1 LAG1 homolog, ceramide synthase 1 153621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12657 LASS2 LAG1 homolog, ceramide synthase 2 599781 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12658 LASS3 LAG1 homolog, ceramide synthase 3 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12659 LASS5 LAG1 homolog, ceramide synthase 5 541476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12660 LASS6 LAG1 homolog, ceramide synthase 6 605865 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12661 LAT2 linker for activation of T cells family, member 2 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12662 LAX1 lymphocyte transmembrane adaptor 1 617019 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12663 LBH limb bud and heart development homolog (mouse) 167310 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12664 LBX1 ladybird homeobox 1 265668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12665 LBX2 ladybird homeobox 2 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12666 LCA5 Leber congenital amaurosis 5 1075854 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12667 LCE1A late cornified envelope 1A 170859 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12668 LCE1B late cornified envelope 1B 183027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12669 LCE1F late cornified envelope 1F 183027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12670 LCE2C late cornified envelope 2C 170859 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12671 LCE3A late cornified envelope 3A 138918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12672 LCE3B late cornified envelope 3B 148044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12673 LCE3C late cornified envelope 3C 146523 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12674 LCE3D late cornified envelope 3D 143481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12675 LCE3E late cornified envelope 3E 143481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12676 LCE4A late cornified envelope 4A 154128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12677 LCE5A late cornified envelope 5A 183027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12678 LCK lymphocyte-specific protein tyrosine kinase 697125 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12679 LCLAT1 643383 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12680 LCN1 lipocalin 1 (tear prealbumin) 260598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12681 LCN12 lipocalin 12 80613 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12682 LCN15 110526 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12683 LCN2 lipocalin 2 314847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12684 LCN6 lipocalin 6 144495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12685 LCN9 lipocalin 9 268710 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12686 LCNL1 74529 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12687 LCORL ligand dependent nuclear receptor corepressor-like 415233 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12688 LDB1 LIM domain binding 1 634257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12689 LDB3 LIM domain binding 3 1109823 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12690 LDHA lactate dehydrogenase A 581022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12691 LDHAL6A lactate dehydrogenase A-like 6A 520689 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12692 LDHAL6B lactate dehydrogenase A-like 6B 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12693 LDHB lactate dehydrogenase B 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12694 LDHD lactate dehydrogenase D 539955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12695 LDLRAD1 low density lipoprotein receptor class A domain containing 1 256035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12696 LDLRAP1 low density lipoprotein receptor adaptor protein 1 360477 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12697 LDOC1 leucine zipper, down-regulated in cancer 1 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12698 LEAP2 liver expressed antimicrobial peptide 2 124722 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12699 LECT1 leukocyte cell derived chemotaxin 1 450216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12700 LECT2 leukocyte cell-derived chemotaxin 2 239304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12701 LEF1 lymphoid enhancer-binding factor 1 647946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12702 LEFTY1 left-right determination factor 1 268710 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12703 LEMD1 LEM domain containing 1 171873 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12704 LEMD2 LEM domain containing 2 367068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12705 LENEP lens epithelial protein 96330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12706 LENG1 leukocyte receptor cluster (LRC) member 1 310284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12707 LENG8 leukocyte receptor cluster (LRC) member 8 1152918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12708 LEP leptin 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12709 LEPROT leptin receptor overlapping transcript 198744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12710 LEPROTL1 leptin receptor overlapping transcript-like 1 198744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12711 LETM2 leucine zipper-EF-hand containing transmembrane protein 2 620061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12712 LGALS1 lectin, galactoside-binding, soluble, 1 (galectin 1) 76557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12713 LGALS13 lectin, galactoside-binding, soluble, 13 (galectin 13) 221052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12714 LGALS2 lectin, galactoside-binding, soluble, 2 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12715 LGALS3 lectin, galactoside-binding, soluble, 3 396981 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12716 LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein 722475 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12717 LGALS9 lectin, galactoside-binding, soluble, 9 (galectin 9) 563784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12718 LGALS9B 447174 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12719 LGALS9C 437034 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12720 LGI3 leucine-rich repeat LGI family, member 3 744783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12721 LGMN legumain 686478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12722 LGR5 leucine-rich repeat-containing G protein-coupled receptor 5 1417572 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12723 LGTN ligatin 920205 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12724 LHFP lipoma HMGIC fusion partner 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12725 LHFPL2 lipoma HMGIC fusion partner-like 2 346281 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12726 LHFPL3 lipoma HMGIC fusion partner-like 3 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12727 LHFPL5 lipoma HMGIC fusion partner-like 5 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12728 LHPP 281892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12729 LHX6 LIM homeobox 6 269724 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12730 LILRB1 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 993213 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12731 LILRB2 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 881673 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12732 LILRB3 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 674310 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12733 LILRB4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 707265 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12734 LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 871026 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12735 LIMCH1 LIM and calponin homology domains 1 1586403 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12736 LIMD1 LIM domains containing 1 1042899 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12737 LIMD2 LIM domain containing 2 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12738 LIMS1 LIM and senescent cell antigen-like domains 1 514098 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12739 LIN28A 273780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12740 LIN28B lin-28 homolog B (C. elegans) 389883 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12741 LIN37 lin-37 homolog (C. elegans) 301665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12742 LIN52 lin-52 homolog (C. elegans) 190125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12743 LIN7A lin-7 homolog A (C. elegans) 322452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12744 LIN7B lin-7 homolog B (C. elegans) 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12745 LIN7C lin-7 homolog C (C. elegans) 311298 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12746 LINS1 lines homolog 1 (Drosophila) 1165086 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12747 LIPA lipase A, lysosomal acid, cholesterol esterase (Wolman disease) 626652 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12748 LIPC lipase, hepatic 778752 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12749 LIPF lipase, gastric 625131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12750 LIPG lipase, endothelial 769119 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12751 LIPH lipase, member H 707772 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12752 LIPI lipase, member I 753402 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12753 LIPJ lipase, family member J 576459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12754 LIPK lipase, family member K 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12755 LIPT1 lipoyltransferase 1 570882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12756 LITAF lipopolysaccharide-induced TNF factor 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12757 LIX1 Lix1 homolog (chicken) 442611 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12758 LIX1L Lix1 homolog (mouse)-like 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12759 LLPH 201786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12760 LMAN2L lectin, mannose-binding 2-like 547053 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12761 LMBR1 limb region 1 homolog (mouse) 745797 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12762 LMBRD2 LMBR1 domain containing 2 1093092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12763 LMCD1 LIM and cysteine-rich domains 1 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12764 LMLN leishmanolysin-like (metallopeptidase M8 family) 1029717 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12765 LMNA lamin A/C 846690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12766 LMO1 LIM domain only 1 (rhombotin 1) 241839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12767 LMO2 LIM domain only 2 (rhombotin-like 1) 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12768 LMO3 LIM domain only 3 (rhombotin-like 2) 228150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12769 LMO7 LIM domain 7 2661750 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12770 LMOD2 leiomodin 2 (cardiac) 839592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12771 LMOD3 leiomodin 3 (fetal) 859365 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12772 LNPEP leucyl/cystinyl aminopeptidase 1585389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12773 LNX2 ligand of numb-protein X 2 1069263 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12774 LOC100302652 814242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12775 LOC150786 382785 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12776 LOC153328 196209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12777 LOC200726 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12778 LOC285033 187083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12779 LOC401052 185055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12780 LOC441294 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12781 LOC642587 157677 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12782 LOC646498 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12783 LOC649330 449202 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12784 LOC728819 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12785 LOC729991-MEF2B 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12786 LOC81691 1145313 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12787 LOXL1 lysyl oxidase-like 1 375687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12788 LOXL2 lysyl oxidase-like 2 1053546 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12789 LPAR2 lysophosphatidic acid receptor 2 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12790 LPAR3 lysophosphatidic acid receptor 3 542490 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12791 LPAR4 lysophosphatidic acid receptor 4 566319 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12792 LPAR5 lysophosphatidic acid receptor 5 148551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12793 LPCAT2 lysophosphatidylcholine acyltransferase 2 768612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12794 LPCAT3 764556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12795 LPPR1 510042 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12796 LPPR4 1061658 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12797 LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) 355407 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12798 LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 876603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12799 LRFN3 leucine rich repeat and fibronectin type III domain containing 3 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12800 LRIT3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 739713 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12801 LRMP lymphoid-restricted membrane protein 794976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12802 LRP11 low density lipoprotein receptor-related protein 11 463398 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12803 LRP2BP LRP2 binding protein 545532 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12804 LRP5 low density lipoprotein receptor-related protein 5 2204943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12805 LRPAP1 low density lipoprotein receptor-related protein associated protein 1 249951 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12806 LRRC1 leucine rich repeat containing 1 791427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12807 LRRC14 leucine rich repeat containing 14 566319 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12808 LRRC15 leucine rich repeat containing 15 888771 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12809 LRRC17 leucine rich repeat containing 17 686478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12810 LRRC18 leucine rich repeat containing 18 402558 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12811 LRRC20 leucine rich repeat containing 20 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12812 LRRC25 leucine rich repeat containing 25 370110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12813 LRRC32 leucine rich repeat containing 32 1012479 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12814 LRRC37A2 leucine rich repeat containing 37, member A2 864942 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12815 LRRC37B leucine rich repeat containing 37B 1466244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12816 LRRC39 leucine rich repeat containing 39 527280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12817 LRRC3B leucine rich repeat containing 3B 397488 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12818 LRRC4 leucine rich repeat containing 4 979017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12819 LRRC40 leucine rich repeat containing 40 947583 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12820 LRRC43 leucine rich repeat containing 43 945555 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12821 LRRC47 leucine rich repeat containing 47 396981 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12822 LRRC4C leucine rich repeat containing 4C 976989 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12823 LRRC52 leucine rich repeat containing 52 481650 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12824 LRRC55 leucine rich repeat containing 55 524238 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12825 LRRC57 leucine rich repeat containing 57 375180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12826 LRRC58 leucine rich repeat containing 58 318396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12827 LRRC59 leucine rich repeat containing 59 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12828 LRRC61 leucine rich repeat containing 61 396981 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12829 LRRC66 1348113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12830 LRRC67 358449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12831 LRRC8D leucine rich repeat containing 8 family, member D 1308567 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12832 LRRC8E leucine rich repeat containing 8 family, member E 794976 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -12833 LRRK1 leucine-rich repeat kinase 1 2902575 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12834 LRRN4CL 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12835 LRRTM3 leucine rich repeat transmembrane neuronal 3 891306 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12836 LRRTM4 leucine rich repeat transmembrane neuronal 4 908037 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12837 LRTM2 leucine-rich repeats and transmembrane domains 2 534378 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12838 LSAMP limbic system-associated membrane protein 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12839 LSG1 large subunit GTPase 1 homolog (S. cerevisiae) 1030731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12840 LSM1 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) 186576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12841 LSM10 LSM10, U7 small nuclear RNA associated 190632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12842 LSM12 LSM12 homolog (S. cerevisiae) 243360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12843 LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 704730 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12844 LSM14B LSM14B, SCD6 homolog B (S. cerevisiae) 431964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12845 LSM2 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) 152607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12846 LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 164775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12847 LSM6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 129285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12848 LSMD1 LSM domain containing 1 231699 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12849 LSP1 lymphocyte-specific protein 1 341718 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12850 LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12851 LST1 leukocyte specific transcript 1 118638 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12852 LTA lymphotoxin alpha (TNF superfamily, member 1) 319410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12853 LTA4H leukotriene A4 hydrolase 886743 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12854 LTB lymphotoxin beta (TNF superfamily, member 3) 311298 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12855 LTB4R leukotriene B4 receptor 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12856 LTBP3 latent transforming growth factor beta binding protein 3 1171170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12857 LTBR lymphotoxin beta receptor (TNFR superfamily, member 3) 643890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12858 LTF lactotransferrin 562263 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12859 LTV1 LTV1 homolog (S. cerevisiae) 746304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12860 LUC7L LUC7-like (S. cerevisiae) 550095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12861 LUC7L3 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12862 LUM lumican 519675 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12863 LY6D lymphocyte antigen 6 complex, locus D 115089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12864 LY6E lymphocyte antigen 6 complex, locus E 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12865 LY6G5C lymphocyte antigen 6 complex, locus G5C 235755 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12866 LY6G6C lymphocyte antigen 6 complex, locus G6C 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12867 LY6G6D lymphocyte antigen 6 complex, locus G6D 209898 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12868 LY6G6F 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12869 LY6H lymphocyte antigen 6 complex, locus H 184041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12870 LY6K lymphocyte antigen 6 complex, locus K 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12871 LY86 lymphocyte antigen 86 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12872 LY96 lymphocyte antigen 96 255021 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12873 LYAR Ly1 antibody reactive homolog (mouse) 594204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12874 LYNX1 Ly6/neurotoxin 1 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12875 LYPD1 LY6/PLAUR domain containing 1 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12876 LYPD2 LY6/PLAUR domain containing 2 94302 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12877 LYPD3 LY6/PLAUR domain containing 3 504465 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12878 LYPD4 LY6/PLAUR domain containing 4 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12879 LYPD6B 328536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12880 LYPLA1 lysophospholipase I 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12881 LYPLA2 lysophospholipase II 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12882 LYPLAL1 lysophospholipase-like 1 355407 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12883 LYRM1 LYR motif containing 1 193167 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12884 LYRM2 LYR motif containing 2 141453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12885 LYRM4 LYR motif containing 4 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12886 LYRM5 LYR motif containing 5 142467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12887 LYRM7 Lyrm7 homolog (mouse) 115089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12888 LYSMD1 LysM, putative peptidoglycan-binding, domain containing 1 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12889 LYSMD2 LysM, putative peptidoglycan-binding, domain containing 2 194181 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12890 LYZ lysozyme (renal amyloidosis) 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12891 LYZL1 lysozyme-like 1 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12892 LYZL2 lysozyme-like 2 306735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12893 LYZL6 lysozyme-like 6 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12894 LZTFL1 leucine zipper transcription factor-like 1 473031 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12895 M6PR mannose-6-phosphate receptor (cation dependent) 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12896 MAB21L1 mab-21-like 1 (C. elegans) 549588 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12897 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 789906 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12898 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 284427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12899 MAD2L1BP MAD2L1 binding protein 399009 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12900 MAEA macrophage erythroblast attacher 189111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12901 MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) 157170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12902 MAF1 MAF1 homolog (S. cerevisiae) 322959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12903 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) 357942 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12904 MAGEA3 melanoma antigen family A, 3 426387 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12905 MAGEA5 melanoma antigen family A, 5 192153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12906 MAGEA6 melanoma antigen family A, 6 446667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12907 MAGEA8 melanoma antigen family A, 8 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12908 MAGEB1 melanoma antigen family B, 1 531336 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12909 MAGEB16 melanoma antigen family B, 16 496353 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12910 MAGEB18 melanoma antigen family B, 18 525252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12911 MAGEF1 melanoma antigen family F, 1 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12912 MAGEH1 melanoma antigen family H, 1 295581 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12913 MAGOH mago-nashi homolog, proliferation-associated (Drosophila) 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12914 MAGOHB mago-nashi homolog B (Drosophila) 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12915 MAK male germ cell-associated kinase 975468 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12916 MAK16 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12917 MAL mal, T-cell differentiation protein 193167 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12918 MAL2 mal, T-cell differentiation protein 2 208377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12919 MALL mal, T-cell differentiation protein-like 187083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12920 MAN1A1 mannosidase, alpha, class 1A, member 1 825903 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12921 MAN1C1 mannosidase, alpha, class 1C, member 1 647439 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12922 MAN2C1 mannosidase, alpha, class 2C, member 1 1337973 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12923 MANBAL mannosidase, beta A, lysosomal-like 134862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12924 MANEAL mannosidase, endo-alpha-like 396474 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12925 MANF 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12926 MANSC1 MANSC domain containing 1 663156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12927 MAOB monoamine oxidase B 797511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12928 MAP1B microtubule-associated protein 1B 3674229 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12929 MAP1LC3A microtubule-associated protein 1 light chain 3 alpha 162747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12930 MAP1LC3B microtubule-associated protein 1 light chain 3 beta 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12931 MAP1LC3B2 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12932 MAP1LC3C microtubule-associated protein 1 light chain 3 gamma 233220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12933 MAP2K6 mitogen-activated protein kinase kinase 6 533871 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12934 MAP3K14 mitogen-activated protein kinase kinase kinase 14 1047969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12935 MAP3K2 mitogen-activated protein kinase kinase kinase 2 922740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12936 MAP3K3 mitogen-activated protein kinase kinase kinase 3 1023126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12937 MAP3K7 mitogen-activated protein kinase kinase kinase 7 907530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12938 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 751881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12939 MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 1379547 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12940 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 1137201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12941 MAP6 microtubule-associated protein 6 832494 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12942 MAP7D2 MAP7 domain containing 2 1141764 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12943 MAP7D3 MAP7 domain containing 3 1332903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12944 MAP9 microtubule-associated protein 9 1011972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12945 MAPK13 mitogen-activated protein kinase 13 518154 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12946 MAPK15 mitogen-activated protein kinase 15 562263 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12947 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1-like 380250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12948 MAPK7 mitogen-activated protein kinase 7 895869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12949 MAPK9 mitogen-activated protein kinase 9 730587 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12950 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 516126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12951 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 729066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12952 MAPKSP1 196209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12953 MAPRE1 microtubule-associated protein, RP/EB family, member 1 421317 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12954 MARCH1 membrane-associated ring finger (C3HC4) 1 423345 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12955 MARCH11 membrane-associated ring finger (C3HC4) 11 346788 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12956 MARCH3 membrane-associated ring finger (C3HC4) 3 394446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12957 MARCH6 membrane-associated ring finger (C3HC4) 6 1424163 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12958 MARCH8 membrane-associated ring finger (C3HC4) 8 456300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12959 MARCH9 membrane-associated ring finger (C3HC4) 9 211419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12960 MARCKSL1 MARCKS-like 1 256035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12961 MARS methionyl-tRNA synthetase 1413009 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12962 MARS2 methionyl-tRNA synthetase 2, mitochondrial 692055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12963 MARVELD2 MARVEL domain containing 2 862407 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12964 MAST3 microtubule associated serine/threonine kinase 3 1106274 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12965 MAT1A methionine adenosyltransferase I, alpha 577473 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12966 MAT2A methionine adenosyltransferase II, alpha 572403 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12967 MATN1 matrilin 1, cartilage matrix protein 456300 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12968 MATN3 matrilin 3 641862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12969 MATR3 matrin 3 1318200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12970 MB myoglobin 241839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12971 MBD2 methyl-CpG binding domain protein 2 468975 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12972 MBIP MAP3K12 binding inhibitory protein 1 542997 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12973 MBLAC2 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12974 MBNL1 muscleblind-like (Drosophila) 662649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12975 MBNL3 muscleblind-like 3 (Drosophila) 587106 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12976 MBOAT1 membrane bound O-acyltransferase domain containing 1 728559 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12977 MBOAT7 membrane bound O-acyltransferase domain containing 7 349830 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12978 MBP myelin basic protein 487734 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12979 MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 279357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12980 MC5R melanocortin 5 receptor 497874 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12981 MCART1 mitochondrial carrier triple repeat 1 455286 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12982 MCART2 mitochondrial carrier triple repeat 2 455286 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12983 MCCC2 methylcrotonoyl-Coenzyme A carboxylase 2 (beta) 261105 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12984 MCCD1 mitochondrial coiled-coil domain 1 91767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12985 MCEE methylmalonyl CoA epimerase 252993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12986 MCF2 MCF.2 cell line derived transforming sequence 1596543 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -12987 MCF2L MCF.2 cell line derived transforming sequence-like 889785 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12988 MCFD2 multiple coagulation factor deficiency 2 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12989 MCHR1 melanin-concentrating hormone receptor 1 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12990 MCL1 myeloid cell leukemia sequence 1 (BCL2-related) 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12991 MCM3AP minichromosome maintenance complex component 3 associated protein 2794584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12992 MCM5 minichromosome maintenance complex component 5 1078389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12993 MCM8 minichromosome maintenance complex component 8 1315665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12994 MCM9 minichromosome maintenance complex component 9 608400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12995 MCOLN2 mucolipin 2 890799 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12996 MCTP1 multiple C2 domains, transmembrane 1 1231503 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -12997 MDFI MyoD family inhibitor 343239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12998 MDFIC MyoD family inhibitor domain containing 334113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -12999 MDH1 malate dehydrogenase 1, NAD (soluble) 527787 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13000 MDH1B malate dehydrogenase 1B, NAD (soluble) 813735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13001 MDM4 Mdm4 p53 binding protein homolog (mouse) 767091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13002 ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 858351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13003 MEA1 male-enhanced antigen 1 274794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13004 MECR mitochondrial trans-2-enoyl-CoA reductase 443625 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13005 MED1 mediator complex subunit 1 2440698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13006 MED10 mediator complex subunit 10 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13007 MED11 mediator complex subunit 11 185562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13008 MED15 mediator complex subunit 15 805116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13009 MED17 mediator complex subunit 17 887250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13010 MED18 mediator complex subunit 18 282906 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13011 MED19 mediator complex subunit 19 192660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13012 MED20 mediator complex subunit 20 332085 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13013 MED21 mediator complex subunit 21 228657 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13014 MED22 mediator complex subunit 22 298116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13015 MED26 mediator complex subunit 26 816270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13016 MED28 mediator complex subunit 28 280371 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13017 MED29 mediator complex subunit 29 345267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13018 MED30 mediator complex subunit 30 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13019 MED31 mediator complex subunit 31 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13020 MED4 mediator complex subunit 4 424866 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13021 MED6 mediator complex subunit 6 384813 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13022 MED7 mediator complex subunit 7 357942 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13023 MED9 mediator complex subunit 9 112047 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13024 MEF2B myocyte enhancer factor 2B 345774 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13025 MEF2D myocyte enhancer factor 2D 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13026 MEGF10 multiple EGF-like-domains 10 1776021 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13027 MEGF9 multiple EGF-like-domains 9 695097 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13028 MEIG1 meiosis expressed gene 1 homolog (mouse) 139425 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13029 MEIS1 Meis homeobox 1 600288 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13030 MEIS3 Meis homeobox 3 423852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13031 MEMO1 mediator of cell motility 1 438555 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13032 MEOX2 mesenchyme homeobox 2 283920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13033 MEP1B meprin A, beta 1084473 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13034 MEPCE methylphosphate capping enzyme 753909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13035 MEPE matrix, extracellular phosphoglycoprotein with ASARM motif (bone) 806130 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13036 METAP1 methionyl aminopeptidase 1 430443 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13037 METT10D methyltransferase 10 domain containing 874575 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13038 METTL1 methyltransferase like 1 433485 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13039 METTL11A 346788 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13040 METTL12 370617 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13041 METTL3 methyltransferase like 3 906009 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13042 METTL4 methyltransferase like 4 735657 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13043 METTL5 methyltransferase like 5 333606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13044 METTL6 methyltransferase like 6 443625 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13045 METTL7A methyltransferase like 7A 376701 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13046 MEX3A mex-3 homolog A (C. elegans) 550602 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13047 MEX3B mex-3 homolog B (C. elegans) 505479 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13048 MFAP2 microfibrillar-associated protein 2 220545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13049 MFAP3 microfibrillar-associated protein 3 556179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13050 MFAP3L microfibrillar-associated protein 3-like 627666 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13051 MFAP4 microfibrillar-associated protein 4 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13052 MFAP5 microfibrillar associated protein 5 282906 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13053 MFHAS1 malignant fibrous histiocytoma amplified sequence 1 829959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13054 MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 373152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13055 MFRP membrane frizzled-related protein 536913 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13056 MFSD1 major facilitator superfamily domain containing 1 656565 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13057 MFSD2A 806637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13058 MFSD2B 644397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13059 MFSD5 major facilitator superfamily domain containing 5 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13060 MFSD6 1216800 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13061 MGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 428922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13062 MGAT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 645918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13063 MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A 845676 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13064 MGAT4B mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B 533364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13065 MGC29506 92781 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13066 MGEA5 meningioma expressed antigen 5 (hyaluronidase) 1324284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13067 MGLL monoglyceride lipase 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13068 MGP matrix Gla protein 166296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13069 MGST1 microsomal glutathione S-transferase 1 243360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13070 MGST2 microsomal glutathione S-transferase 2 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13071 MGST3 microsomal glutathione S-transferase 3 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13072 MIA melanoma inhibitory activity 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13073 MICAL1 microtubule associated monoxygenase, calponin and LIM domain containing 1 1558518 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13074 MICALL1 MICAL-like 1 771147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13075 MICB MHC class I polypeptide-related sequence B 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13076 MID1 midline 1 (Opitz/BBB syndrome) 1034280 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13077 MID1IP1 MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)) 272259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13078 MIER2 mesoderm induction early response 1, family member 2 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13079 MIER3 mesoderm induction early response 1, family member 3 856323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13080 MIOS 1352676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13081 MIOX myo-inositol oxygenase 151593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13082 MIP major intrinsic protein of lens fiber 409656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13083 MIPEP mitochondrial intermediate peptidase 1024647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13084 MIPOL1 mirror-image polydactyly 1 696111 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13085 MIS12 MIS12, MIND kinetochore complex component, homolog (yeast) 315354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13086 MITD1 MIT, microtubule interacting and transport, domain containing 1 394446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13087 MITF microphthalmia-associated transcription factor 879138 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13088 MKI67IP MKI67 (FHA domain) interacting nucleolar phosphoprotein 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13089 MKKS McKusick-Kaufman syndrome 876603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13090 MKLN1 muskelin 1, intracellular mediator containing kelch motifs 1092078 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13091 MKNK1 MAP kinase interacting serine/threonine kinase 1 625131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13092 MKNK2 MAP kinase interacting serine/threonine kinase 2 246402 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13093 MKX mohawk homeobox 451737 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13094 MLANA melan-A 189111 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13095 MLEC 334620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13096 MLF1 myeloid leukemia factor 1 397488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13097 MLF1IP MLF1 interacting protein 637806 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13098 MLF2 myeloid leukemia factor 2 365040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13099 MLH1 mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) 1158495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13100 MLKL mixed lineage kinase domain-like 753909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13101 MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 403572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13102 MLLT11 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13103 MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 879645 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13104 MLN motilin 130299 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13105 MLNR motilin receptor 207870 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13106 MLST8 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13107 MLX MAX-like protein X 309270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13108 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13109 MMADHC 465933 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13110 MMD2 monocyte to macrophage differentiation-associated 2 299130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13111 MME membrane metallo-endopeptidase 1186887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13112 MMGT1 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13113 MMP1 matrix metallopeptidase 1 (interstitial collagenase) 735150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13114 MMP2 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) 952146 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13115 MMP20 matrix metallopeptidase 20 (enamelysin) 756444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13116 MMP21 matrix metallopeptidase 21 607386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13117 MMP24 matrix metallopeptidase 24 (membrane-inserted) 719433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13118 MMP25 matrix metallopeptidase 25 486720 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13119 MMP28 matrix metallopeptidase 28 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13120 MMP7 matrix metallopeptidase 7 (matrilysin, uterine) 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13121 MNS1 meiosis-specific nuclear structural 1 774696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13122 MNT MAX binding protein 391911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13123 MOB2 201786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13124 MOBKL1B MOB1, Mps One Binder kinase activator-like 1B (yeast) 291525 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13125 MOBKL2A MOB1, Mps One Binder kinase activator-like 2A (yeast) 279357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13126 MOBKL2B MOB1, Mps One Binder kinase activator-like 2B (yeast) 336141 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13127 MOBKL2C MOB1, Mps One Binder kinase activator-like 2C (yeast) 417261 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13128 MOBKL3 MOB1, Mps One Binder kinase activator-like 3 (yeast) 327522 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13129 MOBP myelin-associated oligodendrocyte basic protein 128778 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13130 MOCS1 molybdenum cofactor synthesis 1 387855 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13131 MOCS2 molybdenum cofactor synthesis 2 385320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13132 MOCS3 molybdenum cofactor synthesis 3 702702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13133 MOG myelin oligodendrocyte glycoprotein 436527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13134 MOGAT1 monoacylglycerol O-acyltransferase 1 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13135 MOGAT2 monoacylglycerol O-acyltransferase 2 521703 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13136 MORC3 MORC family CW-type zinc finger 3 1442415 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13137 MORF4 mortality factor 4 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13138 MORF4L1 mortality factor 4 like 1 556179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13139 MORF4L2 mortality factor 4 like 2 441597 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13140 MORN4 231699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13141 MORN5 256542 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13142 MOSC1 MOCO sulphurase C-terminal domain containing 1 386841 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13143 MOSPD1 motile sperm domain containing 1 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13144 MOSPD2 motile sperm domain containing 2 819819 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13145 MOSPD3 motile sperm domain containing 3 369096 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13146 MOV10L1 Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 1655862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13147 MOXD1 monooxygenase, DBH-like 1 822354 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13148 MPDU1 mannose-P-dolichol utilization defect 1 391404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13149 MPEG1 1092585 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13150 MPG N-methylpurine-DNA glycosylase 151593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13151 MPHOSPH6 M-phase phosphoprotein 6 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13152 MPI mannose phosphate isomerase 657072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13153 MPL myeloproliferative leukemia virus oncogene 908544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13154 MPND MPN domain containing 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13155 MPP1 membrane protein, palmitoylated 1, 55kDa 720447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13156 MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 1054560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13157 MPP6 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 845169 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13158 MPPE1 metallophosphoesterase 1 606879 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13159 MPPED1 metallophosphoesterase domain containing 1 257049 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13160 MPV17 MpV17 mitochondrial inner membrane protein 283413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13161 MPV17L2 187083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13162 MPZ myelin protein zero (Charcot-Marie-Tooth neuropathy 1B) 354900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13163 MPZL2 myelin protein zero-like 2 338676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13164 MPZL3 myelin protein zero-like 3 371124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13165 MR1 major histocompatibility complex, class I-related 532350 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13166 MRAP2 319410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13167 MRAS muscle RAS oncogene homolog 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13168 MRC1 mannose receptor, C type 1 1372956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13169 MRC1L1 mannose receptor, C type 1-like 1 1372956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13170 MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 1116921 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13171 MRGPRE MAS-related GPR, member E 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13172 MRGPRX1 MAS-related GPR, member X1 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13173 MRGPRX2 MAS-related GPR, member X2 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13174 MRGPRX4 MAS-related GPR, member X4 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13175 MRI1 380250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13176 MRM1 mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) 545025 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13177 MRO maestro 390897 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13178 MRP63 mitochondrial ribosomal protein 63 130806 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13179 MRPL1 mitochondrial ribosomal protein L1 514098 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13180 MRPL10 mitochondrial ribosomal protein L10 380250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13181 MRPL11 mitochondrial ribosomal protein L11 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13182 MRPL12 mitochondrial ribosomal protein L12 212940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13183 MRPL14 mitochondrial ribosomal protein L14 226122 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13184 MRPL16 mitochondrial ribosomal protein L16 391404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13185 MRPL17 mitochondrial ribosomal protein L17 273780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13186 MRPL19 mitochondrial ribosomal protein L19 341718 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13187 MRPL21 mitochondrial ribosomal protein L21 319917 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13188 MRPL22 mitochondrial ribosomal protein L22 329043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13189 MRPL24 mitochondrial ribosomal protein L24 340197 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13190 MRPL27 mitochondrial ribosomal protein L27 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13191 MRPL28 mitochondrial ribosomal protein L28 159705 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13192 MRPL3 mitochondrial ribosomal protein L3 502437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13193 MRPL33 mitochondrial ribosomal protein L33 142467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13194 MRPL35 mitochondrial ribosomal protein L35 298116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13195 MRPL36 mitochondrial ribosomal protein L36 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13196 MRPL37 mitochondrial ribosomal protein L37 659100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13197 MRPL39 mitochondrial ribosomal protein L39 569868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13198 MRPL4 mitochondrial ribosomal protein L4 510549 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13199 MRPL42 mitochondrial ribosomal protein L42 227643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13200 MRPL44 mitochondrial ribosomal protein L44 466440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13201 MRPL47 mitochondrial ribosomal protein L47 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13202 MRPL50 mitochondrial ribosomal protein L50 245895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13203 MRPL54 mitochondrial ribosomal protein L54 133848 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13204 MRPL55 mitochondrial ribosomal protein L55 82641 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13205 MRPL9 mitochondrial ribosomal protein L9 342225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13206 MRPS10 mitochondrial ribosomal protein S10 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13207 MRPS11 mitochondrial ribosomal protein S11 257556 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13208 MRPS12 mitochondrial ribosomal protein S12 214968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13209 MRPS16 mitochondrial ribosomal protein S16 207363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13210 MRPS17 mitochondrial ribosomal protein S17 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13211 MRPS18A mitochondrial ribosomal protein S18A 252993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13212 MRPS18C mitochondrial ribosomal protein S18C 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13213 MRPS2 mitochondrial ribosomal protein S2 366561 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13214 MRPS21 mitochondrial ribosomal protein S21 137904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13215 MRPS23 mitochondrial ribosomal protein S23 276315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13216 MRPS24 mitochondrial ribosomal protein S24 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13217 MRPS25 mitochondrial ribosomal protein S25 202800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13218 MRPS27 mitochondrial ribosomal protein S27 653523 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13219 MRPS28 mitochondrial ribosomal protein S28 292032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13220 MRPS33 mitochondrial ribosomal protein S33 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13221 MRPS35 mitochondrial ribosomal protein S35 474045 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13222 MRPS36 mitochondrial ribosomal protein S36 166296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13223 MRPS6 mitochondrial ribosomal protein S6 172887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13224 MRRF mitochondrial ribosome recycling factor 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13225 MRTO4 mRNA turnover 4 homolog (S. cerevisiae) 353886 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13226 MS4A1 membrane-spanning 4-domains, subfamily A, member 1 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13227 MS4A10 membrane-spanning 4-domains, subfamily A, member 10 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13228 MS4A12 membrane-spanning 4-domains, subfamily A, member 12 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13229 MS4A13 membrane-spanning 4-domains, subfamily A, member 13 242853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13230 MS4A15 membrane-spanning 4-domains, subfamily A, member 15 314340 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13231 MS4A2 membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide) 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13232 MS4A3 membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13233 MS4A4A membrane-spanning 4-domains, subfamily A, member 4 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13234 MS4A5 membrane-spanning 4-domains, subfamily A, member 5 315861 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13235 MS4A6A membrane-spanning 4-domains, subfamily A, member 6A 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13236 MS4A6E membrane-spanning 4-domains, subfamily A, member 6E 231192 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13237 MS4A7 membrane-spanning 4-domains, subfamily A, member 7 378729 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13238 MS4A8B membrane-spanning 4-domains, subfamily A, member 8B 393939 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13239 MSC musculin (activated B-cell factor-1) 207363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13240 MSH5 mutS homolog 5 (E. coli) 1289301 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13241 MSL1 472017 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13242 MSMB microseminoprotein, beta- 183027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13243 MSRA methionine sulfoxide reductase A 278343 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13244 MSRB2 methionine sulfoxide reductase B2 226629 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13245 MST1R macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 2109120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13246 MST4 633243 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13247 MSTO1 misato homolog 1 (Drosophila) 711828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13248 MSX1 msh homeobox 1 146016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13249 MT1B metallothionein 1B 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13250 MT1E metallothionein 1E 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13251 MT1F metallothionein 1F 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13252 MT1G metallothionein 1G 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13253 MT1H metallothionein 1H 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13254 MT1M metallothionein 1M 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13255 MT1X metallothionein 1X 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13256 MT2A metallothionein 2A 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13257 MT3 metallothionein 3 53235 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13258 MT4 metallothionein 4 101907 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13259 MTA1 metastasis associated 1 486720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13260 MTA2 metastasis associated 1 family, member 2 1037829 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13261 MTCH2 mitochondrial carrier homolog 2 (C. elegans) 442611 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13262 MTCP1 mature T-cell proliferation 1 170352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13263 MTCP1NB 109005 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13264 MTERFD2 MTERF domain containing 2 576459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13265 MTF1 metal-regulatory transcription factor 1 1167114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13266 MTFMT mitochondrial methionyl-tRNA formyltransferase 503451 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13267 MTG1 mitochondrial GTPase 1 homolog (S. cerevisiae) 388869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13268 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 510042 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13269 MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 471003 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13270 MTHFR 5,10-methylenetetrahydrofolate reductase (NADPH) 1014507 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13271 MTHFSD methenyltetrahydrofolate synthetase domain containing 377208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13272 MTIF3 mitochondrial translational initiation factor 3 430443 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13273 MTL5 metallothionein-like 5, testis-specific (tesmin) 553644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13274 MTMR1 myotubularin related protein 1 967356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13275 MTMR10 myotubularin related protein 10 1048476 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13276 MTMR2 myotubularin related protein 2 967356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13277 MTNR1A melatonin receptor 1A 441090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13278 MTNR1B melatonin receptor 1B 494325 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13279 MTP18 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13280 MTPN myotrophin 189111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13281 MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 1134666 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13282 MTUS1 mitochondrial tumor suppressor 1 2113176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13283 MTX1 metaxin 1 300651 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13284 MTX3 metaxin 3 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13285 MUC13 mucin 13, cell surface associated 801060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13286 MUC20 mucin 20, cell surface associated 639834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13287 MUCL1 mucin-like 1 146523 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13288 MUDENG 763035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13289 MUL1 mitochondrial ubiquitin ligase activator of NFKB 1 482157 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13290 MUM1 melanoma associated antigen (mutated) 1 682929 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13291 MURC 559221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13292 MUSTN1 musculoskeletal, embryonic nuclear protein 1 132327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13293 MUT methylmalonyl Coenzyme A mutase 1166607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13294 MVD mevalonate (diphospho) decarboxylase 177957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13295 MVK mevalonate kinase 582543 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13296 MXD3 MAX dimerization protein 3 138411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13297 MXI1 MAX interactor 1 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13298 MXRA7 matrix-remodelling associated 7 172380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13299 MYADM myeloid-associated differentiation marker 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13300 MYBPH myosin binding protein H 704223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13301 MYCBP c-myc binding protein 119652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13302 MYD88 myeloid differentiation primary response gene (88) 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13303 MYEOV myeloma overexpressed gene (in a subset of t(11;14) positive multiple myelomas) 428415 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13304 MYF5 myogenic factor 5 395460 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13305 MYL10 266175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13306 MYL2 myosin, light chain 2, regulatory, cardiac, slow 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13307 MYL3 myosin, light chain 3, alkali; ventricular, skeletal, slow 310284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13308 MYL4 myosin, light chain 4, alkali; atrial, embryonic 313326 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13309 MYL5 myosin, light chain 5, regulatory 133848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13310 MYL6B myosin, light chain 6B, alkali, smooth muscle and non-muscle 330057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13311 MYL9 myosin, light chain 9, regulatory 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13312 MYLIP myosin regulatory light chain interacting protein 646425 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13313 MYLK2 myosin light chain kinase 2 893841 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13314 MYLK4 myosin light chain kinase family, member 4 573417 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13315 MYLPF 270231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13316 MYO19 myosin XIX 1083966 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13317 MYOC myocilin, trabecular meshwork inducible glucocorticoid response 774189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13318 MYOCD myocardin 1460667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13319 MYOD1 myogenic differentiation 1 181506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13320 MYOG myogenin (myogenic factor 4) 344253 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13321 MYOT myotilin 777231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13322 MYOZ2 myozenin 2 413205 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13323 MYOZ3 myozenin 3 173394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13324 MYSM1 myb-like, SWIRM and MPN domains 1 1276119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13325 MYST2 MYST histone acetyltransferase 2 951639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13326 MYT1 myelin transcription factor 1 1405404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13327 MZF1 myeloid zinc finger 1 399516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13328 N4BP2L1 NEDD4 binding protein 2-like 1 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13329 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative) 333606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13330 NAA11 351858 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13331 NAA15 1329861 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13332 NAA16 1343550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13333 NAA25 1497171 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13334 NAA30 330564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13335 NAA35 1148862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13336 NAA38 137904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13337 NAA40 377715 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13338 NAA50 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13339 NAAA 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13340 NAB2 NGFI-A binding protein 2 (EGR1 binding protein 2) 605358 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13341 NACC1 546039 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13342 NADSYN1 NAD synthetase 1 877617 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13343 NAE1 NEDD8 activating enzyme E1 subunit 1 845169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13344 NAF1 nuclear assembly factor 1 homolog (S. cerevisiae) 499902 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13345 NAGA N-acetylgalactosaminidase, alpha- 594711 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13346 NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 439062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13347 NAIF1 nuclear apoptosis inducing factor 1 490776 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13348 NAMPT nicotinamide phosphoribosyltransferase 739713 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13349 NANOG Nanog homeobox 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13350 NANOS2 nanos homolog 2 (Drosophila) 212940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13351 NANOS3 nanos homolog 3 (Drosophila) 271245 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13352 NAP1L1 nucleosome assembly protein 1-like 1 624624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13353 NAP1L3 nucleosome assembly protein 1-like 3 729066 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13354 NAP1L4 nucleosome assembly protein 1-like 4 600288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13355 NAP1L5 nucleosome assembly protein 1-like 5 95316 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13356 NAPB N-ethylmaleimide-sensitive factor attachment protein, beta 425373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13357 NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 607386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13358 NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma 500409 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13359 NAPSA napsin A aspartic peptidase 541476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13360 NARF nuclear prelamin A recognition factor 701688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13361 NASP nuclear autoantigenic sperm protein (histone-binding) 1198548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13362 NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase) 447681 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13363 NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) 444639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13364 NAT6 N-acetyltransferase 6 407121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13365 NAT8B N-acetyltransferase 8B (gene/pseudogene) 348816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13366 NBL1 neuroblastoma, suppression of tumorigenicity 1 85683 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13367 NBN nibrin 1160016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13368 NBPF15 neuroblastoma breakpoint family, member 15 736671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13369 NBPF16 neuroblastoma breakpoint family, member 16 1090557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13370 NCALD neurocalcin delta 301158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13371 NCAPG non-SMC condensin I complex, subunit G 1529619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13372 NCAPG2 non-SMC condensin II complex, subunit G2 1794780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13373 NCAPH non-SMC condensin I complex, subunit H 1104753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13374 NCAPH2 non-SMC condensin II complex, subunit H2 448188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13375 NCBP2 nuclear cap binding protein subunit 2, 20kDa 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13376 NCF1 neutrophil cytosolic factor 1, (chronic granulomatous disease, autosomal 1) 259077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13377 NCF4 neutrophil cytosolic factor 4, 40kDa 600795 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13378 NCK1 NCK adaptor protein 1 581022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13379 NCK2 NCK adaptor protein 2 429936 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13380 NCKAP5L 1677663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13381 NCKIPSD NCK interacting protein with SH3 domain 939978 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13382 NCOA4 nuclear receptor coactivator 4 960765 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13383 NCR1 natural cytotoxicity triggering receptor 1 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13384 NCR3 natural cytotoxicity triggering receptor 3 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13385 NCS1 270231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13386 NDE1 nudE nuclear distribution gene E homolog 1 (A. nidulans) 515112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13387 NDEL1 nudE nuclear distribution gene E homolog (A. nidulans)-like 1 562263 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13388 NDNL2 necdin-like 2 365040 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13389 NDP Norrie disease (pseudoglioma) 136383 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13390 NDRG1 N-myc downstream regulated gene 1 506493 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13391 NDRG4 NDRG family member 4 427908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13392 NDST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 1364844 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13393 NDST2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 1354197 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13394 NDST4 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 1354197 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13395 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 230178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13396 NDUFA4 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa 132834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13397 NDUFA4L2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 94809 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13398 NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa 188097 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13399 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa 241839 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13400 NDUFA7 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa 153621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13401 NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa 271245 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13402 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13403 NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 180492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13404 NDUFAF2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13405 NDUFAF3 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13406 NDUFAF4 273780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13407 NDUFB1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13408 NDUFB10 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa 191139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13409 NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa 183534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13410 NDUFB2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 115596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13411 NDUFB3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 154635 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13412 NDUFB5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa 300651 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13413 NDUFB6 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa 203814 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13414 NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 288483 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13415 NDUFC1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 70473 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13416 NDUFC2 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa 102414 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13417 NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 1143792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13418 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13419 NDUFS5 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) 166803 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13420 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) 129285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13421 NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) 183027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13422 NDUFV3 NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa 654030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13423 NECAB2 N-terminal EF-hand calcium binding protein 2 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13424 NECAB3 N-terminal EF-hand calcium binding protein 3 306735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13425 NECAP1 NECAP endocytosis associated 1 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13426 NECAP2 NECAP endocytosis associated 2 443625 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13427 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 1037829 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13428 NEDD8 neural precursor cell expressed, developmentally down-regulated 8 132834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13429 NEFH neurofilament, heavy polypeptide 200kDa 1111344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13430 NEFL neurofilament, light polypeptide 68kDa 557193 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13431 NEGR1 neuronal growth regulator 1 554151 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13432 NEIL2 nei like 2 (E. coli) 512577 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13433 NEIL3 nei endonuclease VIII-like 3 (E. coli) 860886 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13434 NEK4 NIMA (never in mitosis gene a)-related kinase 4 1191957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13435 NEK7 NIMA (never in mitosis gene a)-related kinase 7 479115 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13436 NENF neuron derived neurotrophic factor 179478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13437 NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 799032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13438 NEU1 sialidase 1 (lysosomal sialidase) 644904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13439 NEU3 sialidase 3 (membrane sialidase) 659100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13440 NEURL neuralized homolog (Drosophila) 489762 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13441 NEURL2 neuralized homolog 2 (Drosophila) 205842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13442 NEUROD2 neurogenic differentiation 2 354393 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13443 NEUROD4 neurogenic differentiation 4 507000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13444 NEUROG2 neurogenin 2 148551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13445 NEXN nexilin (F actin binding protein) 1052532 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13446 NFAM1 NFAT activating protein with ITAM motif 1 314847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13447 NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 571389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13448 NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 1378026 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13449 NFATC2IP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13450 NFE2L2 nuclear factor (erythroid-derived 2)-like 2 907023 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13451 NFIA nuclear factor I/A 761007 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13452 NFIB nuclear factor I/B 658593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13453 NFIC nuclear factor I/C (CCAAT-binding transcription factor) 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13454 NFIL3 nuclear factor, interleukin 3 regulated 706251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13455 NFIX nuclear factor I/X (CCAAT-binding transcription factor) 670761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13456 NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 378729 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13457 NFKBIB nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta 426894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13458 NFKBID nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta 486213 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13459 NFKBIE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon 375687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13460 NFKBIL1 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 309777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13461 NFKBIL2 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 845676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13462 NFRKB nuclear factor related to kappaB binding protein 2066025 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13463 NFS1 NFS1 nitrogen fixation 1 homolog (S. cerevisiae) 671775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13464 NFU1 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) 370617 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13465 NFX1 nuclear transcription factor, X-box binding 1 1771965 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13466 NFXL1 nuclear transcription factor, X-box binding-like 1 1310595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13467 NFYA nuclear transcription factor Y, alpha 547560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13468 NFYC nuclear transcription factor Y, gamma 529308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13469 NGB neuroglobin 133341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13470 NGDN neuroguidin, EIF4E binding protein 507000 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13471 NGF nerve growth factor (beta polypeptide) 370110 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13472 NGFRAP1 nerve growth factor receptor (TNFRSF16) associated protein 1 172380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13473 NGRN neugrin, neurite outgrowth associated 342225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13474 NHEDC1 Na+/H+ exchanger domain containing 1 857844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13475 NHEDC2 Na+/H+ exchanger domain containing 2 840606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13476 NHEJ1 nonhomologous end-joining factor 1 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13477 NHLRC2 NHL repeat containing 2 1035801 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13478 NHLRC3 NHL repeat containing 3 543504 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13479 NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 205842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13480 NICN1 nicolin 1 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13481 NINJ1 ninjurin 1 198744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13482 NINJ2 ninjurin 2 293553 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13483 NIP7 nuclear import 7 homolog (S. cerevisiae) 285441 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13484 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 397995 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13485 NIPA2 non imprinted in Prader-Willi/Angelman syndrome 2 559221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13486 NIPAL1 611949 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13487 NIPAL2 515112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13488 NIPAL3 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13489 NIPAL4 607386 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -13490 NIPSNAP1 nipsnap homolog 1 (C. elegans) 367068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13491 NIPSNAP3A nipsnap homolog 3A (C. elegans) 356928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13492 NIPSNAP3B nipsnap homolog 3B (C. elegans) 356928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13493 NISCH nischarin 2220153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13494 NIT1 nitrilase 1 522717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13495 NIT2 nitrilase family, member 2 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13496 NKAIN1 Na+/K+ transporting ATPase interacting 1 138411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13497 NKAIN3 Na+/K+ transporting ATPase interacting 3 283920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13498 NKAP NFKB activating protein 644904 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13499 NKG7 natural killer cell group 7 sequence 260598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13500 NKIRAS1 NFKB inhibitor interacting Ras-like 1 299637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13501 NKIRAS2 NFKB inhibitor interacting Ras-like 2 298116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13502 NKRF NFKB repressing factor 1063179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13503 NKX2-2 NK2 homeobox 2 353886 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13504 NKX2-3 NK2 transcription factor related, locus 3 (Drosophila) 234741 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13505 NKX6-1 NK6 homeobox 1 207870 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13506 NLE1 notchless homolog 1 (Drosophila) 670761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13507 NLGN2 neuroligin 2 721968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13508 NLN neurolysin (metallopeptidase M3 family) 1075854 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13509 NLRP11 NLR family, pyrin domain containing 11 1590966 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13510 NLRP14 NLR family, pyrin domain containing 14 1686282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13511 NLRP3 NLR family, pyrin domain containing 3 1595529 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13512 NLRP6 NLR family, pyrin domain containing 6 601809 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13513 NLRP9 NLR family, pyrin domain containing 9 1249755 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13514 NLRX1 NLR family member X1 1585896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13515 NMB neuromedin B 165789 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13516 NMBR neuromedin B receptor 600795 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13517 NME1 non-metastatic cells 1, protein (NM23A) expressed in 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13518 NME1-NME2 NME1-NME2 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13519 NME2 non-metastatic cells 2, protein (NM23B) expressed in 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13520 NME5 non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase) 334113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13521 NMI N-myc (and STAT) interactor 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13522 NMNAT3 nicotinamide nucleotide adenylyltransferase 3 334113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13523 NMRAL1 NmrA-like family domain containing 1 339690 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13524 NMS neuromedin S 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13525 NMU neuromedin U 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13526 NNAT neuronatin 86697 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13527 NNMT nicotinamide N-methyltransferase 409149 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13528 NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) 601809 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13529 NOBOX NOBOX oogenesis homeobox 460863 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13530 NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 763542 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13531 NOD2 nucleotide-binding oligomerization domain containing 2 1467765 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13532 NOG noggin 234234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13533 NOL4 nucleolar protein 4 994227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13534 NOL7 nucleolar protein 7, 27kDa 306735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13535 NOL8 nucleolar protein 8 1703520 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13536 NOL9 nucleolar protein 9 890799 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13537 NOLC1 nucleolar and coiled-body phosphoprotein 1 1091064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13538 NONO non-POU domain containing, octamer-binding 714363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13539 NOP10 102921 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13540 NOSIP nitric oxide synthase interacting protein 405600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13541 NOTCH2NL Notch homolog 2 (Drosophila) N-terminal like 368589 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13542 NOV nephroblastoma overexpressed gene 519168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13543 NOVA1 neuro-oncological ventral antigen 1 727545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13544 NOVA2 neuro-oncological ventral antigen 2 428415 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13545 NOX4 NADPH oxidase 4 896883 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13546 NOX5 NADPH oxidase, EF-hand calcium binding domain 5 1030731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13547 NPAS1 neuronal PAS domain protein 1 427908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13548 NPBWR1 neuropeptides B/W receptor 1 260091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13549 NPC1L1 NPC1 (Niemann-Pick disease, type C1, gene)-like 1 1992510 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13550 NPC2 Niemann-Pick disease, type C2 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13551 NPEPL1 aminopeptidase-like 1 271752 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13552 NPFF neuropeptide FF-amide peptide precursor 179478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13553 NPFFR1 neuropeptide FF receptor 1 214461 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13554 NPHP1 nephronophthisis 1 (juvenile) 1156974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13555 NPHP3 nephronophthisis 3 (adolescent) 1877928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13556 NPHS2 nephrosis 2, idiopathic, steroid-resistant (podocin) 459342 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13557 NPIP nuclear pore complex interacting protein 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13558 NPL N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) 510549 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13559 NPLOC4 nuclear protein localization 4 homolog (S. cerevisiae) 737685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13560 NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13561 NPM2 nucleophosmin/nucleoplasmin, 2 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13562 NPM3 nucleophosmin/nucleoplasmin, 3 282399 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13563 NPNT nephronectin 847197 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13564 NPPB natriuretic peptide precursor B 211419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13565 NPRL2 559728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13566 NPRL3 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13567 NPS neuropeptide S 142974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13568 NPTX1 neuronal pentraxin I 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13569 NPTXR neuronal pentraxin receptor 419796 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13570 NPVF neuropeptide VF precursor 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13571 NPY5R neuropeptide Y receptor Y5 680394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13572 NQO2 NAD(P)H dehydrogenase, quinone 2 365040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13573 NR0B1 nuclear receptor subfamily 0, group B, member 1 603837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13574 NR1H3 nuclear receptor subfamily 1, group H, member 3 699153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13575 NR1I2 nuclear receptor subfamily 1, group I, member 2 688506 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13576 NR1I3 nuclear receptor subfamily 1, group I, member 3 621075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13577 NR2C1 nuclear receptor subfamily 2, group C, member 1 984594 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13578 NR2C2 nuclear receptor subfamily 2, group C, member 2 965328 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13579 NR2E3 nuclear receptor subfamily 2, group E, member 3 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13580 NR2F1 nuclear receptor subfamily 2, group F, member 1 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13581 NR2F2 nuclear receptor subfamily 2, group F, member 2 552123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13582 NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 1208688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13583 NR4A3 nuclear receptor subfamily 4, group A, member 3 775203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13584 NRAP nebulin-related anchoring protein 2718027 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13585 NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13586 NRBF2 nuclear receptor binding factor 2 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13587 NRG1 neuregulin 1 1419093 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13588 NRG2 neuregulin 2 605865 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13589 NRG4 neuregulin 4 186576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13590 NRGN neurogranin (protein kinase C substrate, RC3) 67938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13591 NRIP1 nuclear receptor interacting protein 1 1764867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13592 NRIP2 nuclear receptor interacting protein 2 441090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13593 NRIP3 nuclear receptor interacting protein 3 292032 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13594 NRL neural retina leucine zipper 194688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13595 NRM nurim (nuclear envelope membrane protein) 407121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13596 NRN1 neuritin 1 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13597 NRN1L neuritin 1-like 179478 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13598 NRSN1 neurensin 1 302172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13599 NRSN2 neurensin 2 315861 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13600 NSA2 409149 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13601 NSD1 nuclear receptor binding SET domain protein 1 4146753 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13602 NSF N-ethylmaleimide-sensitive factor 617019 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13603 NSMCE1 non-SMC element 1 homolog (S. cerevisiae) 420303 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13604 NSUN3 NOL1/NOP2/Sun domain family, member 3 530829 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13605 NSUN6 NOL1/NOP2/Sun domain family, member 6 737178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13606 NT5C 5', 3'-nucleotidase, cytosolic 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13607 NT5C1A 5'-nucleotidase, cytosolic IA 495339 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13608 NT5C2 5'-nucleotidase, cytosolic II 889278 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13609 NT5C3L 5'-nucleotidase, cytosolic III-like 390897 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13610 NT5DC1 5'-nucleotidase domain containing 1 668733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13611 NT5DC2 5'-nucleotidase domain containing 2 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13612 NT5DC3 5'-nucleotidase domain containing 3 755937 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13613 NT5M 5',3'-nucleotidase, mitochondrial 133341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13614 NTF3 neurotrophin 3 416247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13615 NTF4 neurotrophin 4 220038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13616 NTN1 netrin 1 259077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13617 NTN3 227643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13618 NTN4 netrin 4 947076 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13619 NTS neurotensin 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13620 NTSR1 neurotensin receptor 1 (high affinity) 316875 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13621 NUBP1 nucleotide binding protein 1 (MinD homolog, E. coli) 443625 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13622 NUBPL nucleotide binding protein-like 452244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13623 NUCB1 nucleobindin 1 661128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13624 NUCB2 nucleobindin 2 664677 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13625 NUDC nuclear distribution gene C homolog (A. nidulans) 480129 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13626 NUDCD1 NudC domain containing 1 908544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13627 NUDCD3 NudC domain containing 3 463398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13628 NUDT10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 255021 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13629 NUDT11 nudix (nucleoside diphosphate linked moiety X)-type motif 11 243867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13630 NUDT12 nudix (nucleoside diphosphate linked moiety X)-type motif 12 716391 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13631 NUDT15 nudix (nucleoside diphosphate linked moiety X)-type motif 15 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13632 NUDT16 nudix (nucleoside diphosphate linked moiety X)-type motif 16 185055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13633 NUDT16L1 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 91767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13634 NUDT19 nudix (nucleoside diphosphate linked moiety X)-type motif 19 213954 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13635 NUDT2 nudix (nucleoside diphosphate linked moiety X)-type motif 2 229164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13636 NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 221052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13637 NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4 176436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13638 NUDT5 nudix (nucleoside diphosphate linked moiety X)-type motif 5 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13639 NUDT7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13640 NUDT9 nudix (nucleoside diphosphate linked moiety X)-type motif 9 550095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13641 NUFIP1 nuclear fragile X mental retardation protein interacting protein 1 727038 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13642 NUP133 nucleoporin 133kDa 1735461 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13643 NUP210 nucleoporin 210kDa 2605473 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -13644 NUP35 nucleoporin 35kDa 515619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13645 NUP37 nucleoporin 37kDa 515619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13646 NUP43 nucleoporin 43kDa 595725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13647 NUP50 nucleoporin 50kDa 727545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13648 NUP54 nucleoporin 54kDa 757965 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13649 NUP62CL nucleoporin 62kDa C-terminal like 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13650 NUP85 nucleoporin 85kDa 1037829 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13651 NUPR1 157677 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13652 NUS1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13653 NUSAP1 nucleolar and spindle associated protein 1 642876 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13654 NVL nuclear VCP-like 1350141 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13655 NXF2 nuclear RNA export factor 2 952653 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13656 NXF2B nuclear RNA export factor 2B 952653 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13657 NXN nucleoredoxin 355407 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13658 NXNL1 nucleoredoxin-like 1 185055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13659 NXPH1 neurexophilin 1 417768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13660 NXPH2 neurexophilin 2 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13661 NXPH3 neurexophilin 3 359463 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13662 NXPH4 neurexophilin 4 265161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13663 NXT1 NTF2-like export factor 1 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13664 NXT2 nuclear transport factor 2-like export factor 2 311298 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13665 OAF OAF homolog (Drosophila) 304707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13666 OAT ornithine aminotransferase (gyrate atrophy) 687492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13667 OAZ2 ornithine decarboxylase antizyme 2 250458 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13668 OAZ3 ornithine decarboxylase antizyme 3 364533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13669 OBFC2A oligonucleotide/oligosaccharide-binding fold containing 2A 323973 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13670 OBP2A odorant binding protein 2A 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13671 OBP2B odorant binding protein 2B 272259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13672 OCA2 oculocutaneous albinism II 1266486 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13673 OCEL1 occludin/ELL domain containing 1 328029 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13674 OCIAD2 OCIA domain containing 2 247923 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13675 OCLM oculomedin 70473 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13676 OCLN occludin 1110837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13677 OCM oncomodulin 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13678 OCM2 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13679 ODAM odontogenic, ameloblast asssociated 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13680 ODC1 ornithine decarboxylase 1 722982 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13681 ODF2L outer dense fiber of sperm tails 2-like 1013493 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13682 ODF3 outer dense fiber of sperm tails 3 241332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13683 ODF3L1 outer dense fiber of sperm tails 3-like 1 426387 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13684 ODF4 outer dense fiber of sperm tails 4 398502 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13685 OGFOD1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 848211 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13686 OGFRL1 opioid growth factor receptor-like 1 581022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13687 OGN osteoglycin 466947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13688 OIP5 Opa interacting protein 5 358956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13689 OIT3 oncoprotein induced transcript 3 848718 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13690 OLA1 Obg-like ATPase 1 624117 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13691 OLAH oleoyl-ACP hydrolase 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13692 OLFM1 olfactomedin 1 642369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13693 OLFM2 olfactomedin 2 649467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13694 OLFM3 olfactomedin 3 710307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13695 OLFML1 olfactomedin-like 1 619047 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13696 OLFML2B olfactomedin-like 2B 1158495 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13697 OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 428922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13698 OMG oligodendrocyte myelin glycoprotein 672789 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13699 OMP olfactory marker protein 218517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13700 ONECUT1 one cut homeobox 1 598260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13701 OOEP oocyte expressed protein homolog (dog) 234234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13702 OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 483171 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13703 OPALIN 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13704 OPN1MW opsin 1 (cone pigments), medium-wave-sensitive 539955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13705 OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 539955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13706 OPN1SW opsin 1 (cone pigments), short-wave-sensitive 540969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13707 OPN3 opsin 3 463398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13708 OPN5 opsin 5 547560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13709 OPTC opticin 459342 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13710 OR10A3 olfactory receptor, family 10, subfamily A, member 3 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13711 OR10A5 olfactory receptor, family 10, subfamily A, member 5 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13712 OR10A6 olfactory receptor, family 10, subfamily A, member 6 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13713 OR10G3 olfactory receptor, family 10, subfamily G, member 3 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13714 OR10G4 olfactory receptor, family 10, subfamily G, member 4 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13715 OR10G8 olfactory receptor, family 10, subfamily G, member 8 476580 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13716 OR10H3 olfactory receptor, family 10, subfamily H, member 3 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13717 OR10H5 olfactory receptor, family 10, subfamily H, member 5 482664 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13718 OR10K2 olfactory receptor, family 10, subfamily K, member 2 478101 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13719 OR10P1 olfactory receptor, family 10, subfamily P, member 1 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13720 OR10R2 olfactory receptor, family 10, subfamily R, member 2 513084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13721 OR10S1 olfactory receptor, family 10, subfamily S, member 1 507000 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13722 OR10T2 olfactory receptor, family 10, subfamily T, member 2 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13723 OR10W1 olfactory receptor, family 10, subfamily W, member 1 467454 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13724 OR10X1 olfactory receptor, family 10, subfamily X, member 1 499395 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13725 OR11A1 olfactory receptor, family 11, subfamily A, member 1 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13726 OR11G2 olfactory receptor, family 11, subfamily G, member 2 528294 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13727 OR11H1 olfactory receptor, family 11, subfamily H, member 1 499395 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13728 OR11L1 olfactory receptor, family 11, subfamily L, member 1 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13729 OR12D2 olfactory receptor, family 12, subfamily D, member 2 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13730 OR13C3 olfactory receptor, family 13, subfamily C, member 3 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13731 OR13C5 olfactory receptor, family 13, subfamily C, member 5 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13732 OR13C9 olfactory receptor, family 13, subfamily C, member 9 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13733 OR13D1 olfactory receptor, family 13, subfamily D, member 1 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13734 OR13G1 olfactory receptor, family 13, subfamily G, member 1 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13735 OR13H1 olfactory receptor, family 13, subfamily H, member 1 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13736 OR13J1 olfactory receptor, family 13, subfamily J, member 1 478101 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13737 OR14A16 olfactory receptor, family 14, subfamily A, member 16 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13738 OR14C36 olfactory receptor, family 14, subfamily C, member 36 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13739 OR14I1 olfactory receptor, family 14, subfamily I, member 1 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13740 OR14J1 olfactory receptor, family 14, subfamily J, member 1 491790 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13741 OR1B1 olfactory receptor, family 1, subfamily B, member 1 487227 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13742 OR1C1 olfactory receptor, family 1, subfamily C, member 1 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13743 OR1D2 olfactory receptor, family 1, subfamily D, member 2 477594 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13744 OR1D5 olfactory receptor, family 1, subfamily D, member 5 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13745 OR1E1 olfactory receptor, family 1, subfamily E, member 1 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13746 OR1E2 olfactory receptor, family 1, subfamily E, member 2 494832 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13747 OR1F1 olfactory receptor, family 1, subfamily F, member 1 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13748 OR1G1 olfactory receptor, family 1, subfamily G, member 1 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13749 OR1J1 olfactory receptor, family 1, subfamily J, member 1 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13750 OR1J4 olfactory receptor, family 1, subfamily J, member 4 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13751 OR1L1 olfactory receptor, family 1, subfamily L, member 1 474045 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13752 OR1L3 olfactory receptor, family 1, subfamily L, member 3 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13753 OR1N1 olfactory receptor, family 1, subfamily N, member 1 476580 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13754 OR1N2 olfactory receptor, family 1, subfamily N, member 2 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13755 OR1Q1 olfactory receptor, family 1, subfamily Q, member 1 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13756 OR1S1 olfactory receptor, family 1, subfamily S, member 1 497874 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13757 OR1S2 olfactory receptor, family 1, subfamily S, member 2 497874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13758 OR2A1 olfactory receptor, family 2, subfamily A, member 1 626145 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13759 OR2A12 olfactory receptor, family 2, subfamily A, member 12 475059 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13760 OR2A14 olfactory receptor, family 2, subfamily A, member 14 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13761 OR2A2 olfactory receptor, family 2, subfamily A, member 2 487227 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13762 OR2A25 olfactory receptor, family 2, subfamily A, member 25 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13763 OR2A4 olfactory receptor, family 2, subfamily A, member 4 407121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13764 OR2A42 olfactory receptor, family 2, subfamily A, member 42 607893 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13765 OR2A5 olfactory receptor, family 2, subfamily A, member 5 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13766 OR2A7 olfactory receptor, family 2, subfamily A, member 7 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13767 OR2AK2 olfactory receptor, family 2, subfamily AK, member 2 513084 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13768 OR2AT4 olfactory receptor, family 2, subfamily AT, member 4 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13769 OR2B11 olfactory receptor, family 2, subfamily B, member 11 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13770 OR2B6 olfactory receptor, family 2, subfamily B, member 6 479622 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13771 OR2C1 olfactory receptor, family 2, subfamily C, member 1 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13772 OR2C3 olfactory receptor, family 2, subfamily C, member 3 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13773 OR2D2 olfactory receptor, family 2, subfamily D, member 2 472017 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13774 OR2F2 olfactory receptor, family 2, subfamily F, member 2 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13775 OR2G2 olfactory receptor, family 2, subfamily G, member 2 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13776 OR2G3 olfactory receptor, family 2, subfamily G, member 3 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13777 OR2G6 olfactory receptor, family 2, subfamily G, member 6 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13778 OR2H1 olfactory receptor, family 2, subfamily H, member 1 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13779 OR2H2 olfactory receptor, family 2, subfamily H, member 2 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13780 OR2J2 olfactory receptor, family 2, subfamily J, member 2 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13781 OR2K2 olfactory receptor, family 2, subfamily K, member 2 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13782 OR2L13 olfactory receptor, family 2, subfamily L, member 13 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13783 OR2L2 olfactory receptor, family 2, subfamily L, member 2 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13784 OR2L8 olfactory receptor, family 2, subfamily L, member 8 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13785 OR2M2 olfactory receptor, family 2, subfamily M, member 2 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13786 OR2M3 olfactory receptor, family 2, subfamily M, member 3 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13787 OR2M4 olfactory receptor, family 2, subfamily M, member 4 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13788 OR2M5 olfactory receptor, family 2, subfamily M, member 5 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13789 OR2M7 olfactory receptor, family 2, subfamily M, member 7 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13790 OR2S2 olfactory receptor, family 2, subfamily S, member 2 488748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13791 OR2T1 olfactory receptor, family 2, subfamily T, member 1 564798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13792 OR2T10 olfactory receptor, family 2, subfamily T, member 10 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13793 OR2T11 olfactory receptor, family 2, subfamily T, member 11 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13794 OR2T12 olfactory receptor, family 2, subfamily T, member 12 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13795 OR2T2 olfactory receptor, family 2, subfamily T, member 2 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13796 OR2T27 olfactory receptor, family 2, subfamily T, member 27 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13797 OR2T29 olfactory receptor, family 2, subfamily T, member 29 138918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13798 OR2T3 olfactory receptor, family 2, subfamily T, member 3 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13799 OR2T33 olfactory receptor, family 2, subfamily T, member 33 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13800 OR2T34 olfactory receptor, family 2, subfamily T, member 34 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13801 OR2T35 olfactory receptor, family 2, subfamily T, member 35 154128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13802 OR2T4 olfactory receptor, family 2, subfamily T, member 4 532857 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13803 OR2T5 olfactory receptor, family 2, subfamily T, member 5 185055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13804 OR2T6 olfactory receptor, family 2, subfamily T, member 6 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13805 OR2T8 olfactory receptor, family 2, subfamily T, member 8 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13806 OR2V2 olfactory receptor, family 2, subfamily V, member 2 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13807 OR2W1 olfactory receptor, family 2, subfamily W, member 1 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13808 OR2W3 olfactory receptor, family 2, subfamily W, member 3 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13809 OR2W5 olfactory receptor, family 2, subfamily W, member 5 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13810 OR2Y1 olfactory receptor, family 2, subfamily Y, member 1 476580 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13811 OR4A16 olfactory receptor, family 4, subfamily A, member 16 502437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13812 OR4A47 olfactory receptor, family 4, subfamily A, member 47 473538 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13813 OR4B1 olfactory receptor, family 4, subfamily B, member 1 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13814 OR4C11 olfactory receptor, family 4, subfamily C, member 11 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13815 OR4C12 olfactory receptor, family 4, subfamily C, member 12 473538 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13816 OR4C15 olfactory receptor, family 4, subfamily C, member 15 566319 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13817 OR4C3 olfactory receptor, family 4, subfamily C, member 3 503958 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13818 OR4C46 olfactory receptor, family 4, subfamily C, member 46 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13819 OR4C6 olfactory receptor, family 4, subfamily C, member 6 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13820 OR4D1 olfactory receptor, family 4, subfamily D, member 1 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13821 OR4D5 olfactory receptor, family 4, subfamily D, member 5 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13822 OR4D6 olfactory receptor, family 4, subfamily D, member 6 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13823 OR4D9 olfactory receptor, family 4, subfamily D, member 9 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13824 OR4F15 olfactory receptor, family 4, subfamily F, member 15 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13825 OR4F17 olfactory receptor, family 4, subfamily F, member 17 439062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13826 OR4F21 olfactory receptor, family 4, subfamily F, member 21 261105 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13827 OR4F4 olfactory receptor, family 4, subfamily F, member 4 358449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13828 OR4F6 olfactory receptor, family 4, subfamily F, member 6 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13829 OR4K1 olfactory receptor, family 4, subfamily K, member 1 476580 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13830 OR4K17 olfactory receptor, family 4, subfamily K, member 17 525252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13831 OR4K5 olfactory receptor, family 4, subfamily K, member 5 494832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13832 OR4M2 olfactory receptor, family 4, subfamily M, member 2 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13833 OR4N4 olfactory receptor, family 4, subfamily N, member 4 484185 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13834 OR4N5 olfactory receptor, family 4, subfamily N, member 5 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13835 OR4Q3 olfactory receptor, family 4, subfamily Q, member 3 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13836 OR4X1 olfactory receptor, family 4, subfamily X, member 1 465933 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13837 OR51A2 olfactory receptor, family 51, subfamily A, member 2 479622 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13838 OR51B2 olfactory receptor, family 51, subfamily B, member 2 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13839 OR51B5 olfactory receptor, family 51, subfamily B, member 5 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13840 OR51B6 olfactory receptor, family 51, subfamily B, member 6 478101 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13841 OR51E1 olfactory receptor, family 51, subfamily E, member 1 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13842 OR51F1 olfactory receptor, family 51, subfamily F, member 1 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13843 OR51F2 olfactory receptor, family 51, subfamily F, member 2 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13844 OR51G1 olfactory receptor, family 51, subfamily G, member 1 491790 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13845 OR51I1 olfactory receptor, family 51, subfamily I, member 1 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13846 OR51I2 olfactory receptor, family 51, subfamily I, member 2 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13847 OR51L1 olfactory receptor, family 51, subfamily L, member 1 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13848 OR51S1 olfactory receptor, family 51, subfamily S, member 1 494832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13849 OR51T1 olfactory receptor, family 51, subfamily T, member 1 541983 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13850 OR52A1 olfactory receptor, family 52, subfamily A, member 1 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13851 OR52B4 olfactory receptor, family 52, subfamily B, member 4 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13852 OR52E2 olfactory receptor, family 52, subfamily E, member 2 497367 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13853 OR52E4 olfactory receptor, family 52, subfamily E, member 4 478101 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13854 OR52E6 olfactory receptor, family 52, subfamily E, member 6 479622 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13855 OR52E8 olfactory receptor, family 52, subfamily E, member 8 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13856 OR52I1 olfactory receptor, family 52, subfamily I, member 1 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13857 OR52I2 olfactory receptor, family 52, subfamily I, member 2 535899 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13858 OR52J3 olfactory receptor, family 52, subfamily J, member 3 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13859 OR52N1 olfactory receptor, family 52, subfamily N, member 1 490269 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13860 OR52W1 olfactory receptor, family 52, subfamily W, member 1 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13861 OR56A3 olfactory receptor, family 56, subfamily A, member 3 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13862 OR56B1 olfactory receptor, family 56, subfamily B, member 1 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13863 OR5A2 olfactory receptor, family 5, subfamily A, member 2 496353 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13864 OR5AC2 olfactory receptor, family 5, subfamily AC, member 2 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13865 OR5AP2 olfactory receptor, family 5, subfamily AP, member 2 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13866 OR5AR1 olfactory receptor, family 5, subfamily AR, member 1 475059 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13867 OR5AU1 olfactory receptor, family 5, subfamily AU, member 1 554151 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13868 OR5B12 olfactory receptor, family 5, subfamily B, member 12 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13869 OR5B2 olfactory receptor, family 5, subfamily B, member 2 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13870 OR5B21 olfactory receptor, family 5, subfamily B, member 21 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13871 OR5B3 olfactory receptor, family 5, subfamily B, member 3 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13872 OR5C1 olfactory receptor, family 5, subfamily C, member 1 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13873 OR5F1 olfactory receptor, family 5, subfamily F, member 1 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13874 OR5H14 olfactory receptor, family 5, subfamily H, member 14 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13875 OR5J2 olfactory receptor, family 5, subfamily J, member 2 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13876 OR5K1 olfactory receptor, family 5, subfamily K, member 1 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13877 OR5K3 olfactory receptor, family 5, subfamily K, member 3 491790 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13878 OR5K4 olfactory receptor, family 5, subfamily K, member 4 491790 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13879 OR5M10 olfactory receptor, family 5, subfamily M, member 10 482664 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13880 OR5M8 olfactory receptor, family 5, subfamily M, member 8 476580 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13881 OR5M9 olfactory receptor, family 5, subfamily M, member 9 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13882 OR5P2 olfactory receptor, family 5, subfamily P, member 2 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13883 OR5P3 olfactory receptor, family 5, subfamily P, member 3 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13884 OR5T3 olfactory receptor, family 5, subfamily T, member 3 520689 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13885 OR5V1 olfactory receptor, family 5, subfamily V, member 1 491790 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13886 OR6B2 olfactory receptor, family 6, subfamily B, member 2 477087 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13887 OR6B3 olfactory receptor, family 6, subfamily B, member 3 468468 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13888 OR6C3 olfactory receptor, family 6, subfamily C, member 3 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13889 OR6C4 olfactory receptor, family 6, subfamily C, member 4 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13890 OR6C65 olfactory receptor, family 6, subfamily C, member 65 478101 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13891 OR6C68 olfactory receptor, family 6, subfamily C, member 68 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13892 OR6C74 olfactory receptor, family 6, subfamily C, member 74 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13893 OR6C75 olfactory receptor, family 6, subfamily C, member 75 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13894 OR6C76 olfactory receptor, family 6, subfamily C, member 76 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13895 OR6F1 olfactory receptor, family 6, subfamily F, member 1 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13896 OR6K3 olfactory receptor, family 6, subfamily K, member 3 481650 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13897 OR6N2 olfactory receptor, family 6, subfamily N, member 2 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13898 OR6Q1 olfactory receptor, family 6, subfamily Q, member 1 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13899 OR6T1 olfactory receptor, family 6, subfamily T, member 1 494832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13900 OR6Y1 olfactory receptor, family 6, subfamily Y, member 1 497874 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13901 OR7C1 olfactory receptor, family 7, subfamily C, member 1 490269 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13902 OR7C2 olfactory receptor, family 7, subfamily C, member 2 488748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13903 OR7E24 olfactory receptor, family 7, subfamily E, member 24 519168 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13904 OR7G1 olfactory receptor, family 7, subfamily G, member 1 466440 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13905 OR7G2 olfactory receptor, family 7, subfamily G, member 2 528294 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13906 OR8A1 olfactory receptor, family 8, subfamily A, member 1 499395 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13907 OR8B2 olfactory receptor, family 8, subfamily B, member 2 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13908 OR8B3 olfactory receptor, family 8, subfamily B, member 3 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13909 OR8B4 olfactory receptor, family 8, subfamily B, member 4 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13910 OR8B8 olfactory receptor, family 8, subfamily B, member 8 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13911 OR8D1 olfactory receptor, family 8, subfamily D, member 1 472017 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13912 OR8D2 olfactory receptor, family 8, subfamily D, member 2 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13913 OR8G1 olfactory receptor, family 8, subfamily G, member 1 475059 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13914 OR8G2 olfactory receptor, family 8, subfamily G, member 2 465933 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13915 OR8G5 olfactory receptor, family 8, subfamily G, member 5 529815 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13916 OR8H3 olfactory receptor, family 8, subfamily H, member 3 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13917 OR8I2 olfactory receptor, family 8, subfamily I, member 2 475059 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13918 OR8J1 olfactory receptor, family 8, subfamily J, member 1 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13919 OR8J3 olfactory receptor, family 8, subfamily J, member 3 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13920 OR8K3 olfactory receptor, family 8, subfamily K, member 3 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13921 OR8K5 olfactory receptor, family 8, subfamily K, member 5 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13922 OR8S1 olfactory receptor, family 8, subfamily S, member 1 551616 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13923 OR9A4 olfactory receptor, family 9, subfamily A, member 4 481143 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13924 OR9G1 olfactory receptor, family 9, subfamily G, member 1 467454 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13925 OR9G9 olfactory receptor, family 9, subfamily G, member 9 467454 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13926 OR9I1 olfactory receptor, family 9, subfamily I, member 1 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13927 OR9Q1 olfactory receptor, family 9, subfamily Q, member 1 475059 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13928 OR9Q2 olfactory receptor, family 9, subfamily Q, member 2 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13929 ORAI1 ORAI calcium release-activated calcium modulator 1 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13930 ORAI2 ORAI calcium release-activated calcium modulator 2 341211 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13931 ORAI3 ORAI calcium release-activated calcium modulator 3 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13932 ORAOV1 oral cancer overexpressed 1 192660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13933 ORC1L origin recognition complex, subunit 1-like (yeast) 1343550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13934 ORC4L origin recognition complex, subunit 4-like (yeast) 691041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13935 ORC5L origin recognition complex, subunit 5-like (yeast) 741234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13936 ORC6L origin recognition complex, subunit 6 like (yeast) 364026 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13937 ORMDL1 ORM1-like 1 (S. cerevisiae) 240318 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13938 ORMDL2 ORM1-like 2 (S. cerevisiae) 240318 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13939 OSBPL11 oxysterol binding protein-like 11 1164072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13940 OSBPL3 oxysterol binding protein-like 3 1395264 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13941 OSBPL6 oxysterol binding protein-like 6 1530633 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13942 OSCAR osteoclast associated, immunoglobulin-like receptor 202800 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13943 OSGEP O-sialoglycoprotein endopeptidase 533364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13944 OSGEPL1 O-sialoglycoprotein endopeptidase-like 1 645411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13945 OSGIN2 oxidative stress induced growth inhibitor family member 2 824382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13946 OSM oncostatin M 389376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13947 OSR1 odd-skipped related 1 (Drosophila) 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13948 OSTC 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13949 OSTF1 osteoclast stimulating factor 1 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13950 OSTM1 osteopetrosis associated transmembrane protein 1 315861 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13951 OSTN osteocrin 209898 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13952 OSTalpha 515619 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13953 OTC ornithine carbamoyltransferase 560235 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13954 OTOA otoancorin 1492101 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13955 OTOL1 685464 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13956 OTOR otoraplin 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13957 OTOS otospiralin 142467 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13958 OTUB1 OTU domain, ubiquitin aldehyde binding 1 363012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13959 OTUB2 OTU domain, ubiquitin aldehyde binding 2 366054 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13960 OTUD3 OTU domain containing 3 509028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13961 OTUD5 OTU domain containing 5 661128 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13962 OTUD6A OTU domain containing 6A 380757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13963 OTUD6B OTU domain containing 6B 417768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13964 OTX1 orthodenticle homeobox 1 538941 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13965 OTX2 orthodenticle homeobox 2 459342 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13966 OVCA2 188604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13967 OVOL1 ovo-like 1(Drosophila) 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13968 OVOL2 ovo-like 2 (Drosophila) 261105 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13969 OXA1L oxidase (cytochrome c) assembly 1-like 774696 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13970 OXNAD1 oxidoreductase NAD-binding domain containing 1 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13971 OXSM 3-oxoacyl-ACP synthase, mitochondrial 703716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13972 OXSR1 oxidative-stress responsive 1 802074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13973 OXTR oxytocin receptor 357942 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13974 P2RX1 purinergic receptor P2X, ligand-gated ion channel, 1 531336 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13975 P2RX2 purinergic receptor P2X, ligand-gated ion channel, 2 557700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13976 P2RY12 purinergic receptor P2Y, G-protein coupled, 12 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13977 P2RY14 purinergic receptor P2Y, G-protein coupled, 14 517647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13978 P2RY6 pyrimidinergic receptor P2Y, G-protein coupled, 6 502437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13979 P4HA1 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I 880152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13980 P4HA2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II 876096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13981 P4HB procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide 478608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13982 PA2G4 proliferation-associated 2G4, 38kDa 627159 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13983 PAAF1 proteasomal ATPase-associated factor 1 596232 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13984 PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) 935922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13985 PACRGL 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13986 PACS2 phosphofurin acidic cluster sorting protein 2 611949 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13987 PACSIN3 protein kinase C and casein kinase substrate in neurons 3 630708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13988 PADI1 peptidyl arginine deiminase, type I 924261 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -13989 PADI6 peptidyl arginine deiminase, type VI 880659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13990 PAF1 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) 811707 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13991 PAFAH1B2 platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13992 PAFAH2 platelet-activating factor acetylhydrolase 2, 40kDa 615498 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13993 PAGE2B P antigen family, member 2B 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13994 PAGE4 P antigen family, member 4 (prostate associated) 164775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13995 PAGE5 P antigen family, member 5 (prostate associated) 180999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13996 PAIP1 poly(A) binding protein interacting protein 1 616005 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13997 PAIP2 poly(A) binding protein interacting protein 2 200772 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -13998 PAIP2B poly(A) binding protein interacting protein 2B 194688 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -13999 PAK1IP1 PAK1 interacting protein 1 618033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14000 PAK4 p21(CDKN1A)-activated kinase 4 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14001 PAK6 p21(CDKN1A)-activated kinase 6 646932 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14002 PALB2 partner and localizer of BRCA2 1819623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14003 PALM2 paralemmin 2 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14004 PAM peptidylglycine alpha-amidating monooxygenase 1533675 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14005 PAN3 PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) 1169142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14006 PANK1 pantothenate kinase 1 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14007 PANK3 pantothenate kinase 3 562263 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14008 PANX3 pannexin 3 605865 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14009 PAPD4 PAP associated domain containing 4 766077 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14010 PAPL 692055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14011 PAPLN papilin, proteoglycan-like sulfated glycoprotein 1534689 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14012 PAPOLB poly(A) polymerase beta (testis specific) 950625 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14013 PAPOLG poly(A) polymerase gamma 1165593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14014 PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 953667 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14015 PAQR5 progestin and adipoQ receptor family member V 517647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14016 PAQR6 progestin and adipoQ receptor family member VI 516633 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14017 PAQR7 progestin and adipoQ receptor family member VII 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14018 PAQR8 progestin and adipoQ receptor family member VIII 541983 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14019 PARD6A par-6 partitioning defective 6 homolog alpha (C. elegans) 329550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14020 PARK7 Parkinson disease (autosomal recessive, early onset) 7 301158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14021 PARL presenilin associated, rhomboid-like 546039 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14022 PARM1 476073 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14023 PARN poly(A)-specific ribonuclease (deadenylation nuclease) 898911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14024 PARP11 poly (ADP-ribose) polymerase family, member 11 520689 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14025 PARP16 poly (ADP-ribose) polymerase family, member 16 414726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14026 PARP2 poly (ADP-ribose) polymerase family, member 2 895362 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14027 PARVB parvin, beta 633750 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14028 PARVG parvin, gamma 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14029 PATE1 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14030 PATE2 181506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14031 PATL1 protein associated with topoisomerase II homolog 1 (yeast) 949104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14032 PATZ1 POZ (BTB) and AT hook containing zinc finger 1 1078389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14033 PAWR PRKC, apoptosis, WT1, regulator 267189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14034 PAX1 paired box 1 504465 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14035 PAX4 paired box 4 520689 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14036 PAX6 paired box 6 686985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14037 PAX7 paired box 7 593697 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14038 PAX9 paired box 9 450723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14039 PAXIP1 PAX interacting (with transcription-activation domain) protein 1 1273584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14040 PBLD phenazine biosynthesis-like protein domain containing 502944 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14041 PBOV1 prostate and breast cancer overexpressed 1 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14042 PBX2 pre-B-cell leukemia homeobox 2 617526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14043 PBX3 pre-B-cell leukemia homeobox 3 576459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14044 PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha 164268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14045 PCBD2 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 162747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14046 PCBP3 poly(rC) binding protein 3 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14047 PCCB propionyl Coenzyme A carboxylase, beta polypeptide 729573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14048 PCDH20 protocadherin 20 1361295 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14049 PCDH8 protocadherin 8 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14050 PCDHA3 protocadherin alpha 3 1484496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14051 PCDHB15 protocadherin beta 15 1186380 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14052 PCDHB2 protocadherin beta 2 1213758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14053 PCDHB3 protocadherin beta 3 1210716 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -14054 PCDHB9 protocadherin beta 9 1201590 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14055 PCDHGA10 protocadherin gamma subfamily A, 10 1332903 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14056 PCDHGA6 protocadherin gamma subfamily A, 6 1392222 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14057 PCDHGA7 protocadherin gamma subfamily A, 7 1417065 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14058 PCDHGA8 protocadherin gamma subfamily A, 8 1380054 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14059 PCDHGC5 protocadherin gamma subfamily C, 5 1482975 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14060 PCDP1 876603 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14061 PCGF1 polycomb group ring finger 1 364026 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14062 PCGF2 polycomb group ring finger 2 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14063 PCGF3 polycomb group ring finger 3 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14064 PCGF5 polycomb group ring finger 5 409149 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14065 PCGF6 polycomb group ring finger 6 369603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14066 PCIF1 1047969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14067 PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 331071 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14068 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 554658 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14069 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14070 PCNA proliferating cell nuclear antigen 296595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14071 PCNP PEST proteolytic signal containing nuclear protein 247923 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14072 PCNT pericentrin 3882606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14073 PCOLCE procollagen C-endopeptidase enhancer 608400 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14074 PCP4 Purkinje cell protein 4 101907 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14075 PCP4L1 Purkinje cell protein 4 like 1 104442 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14076 PCSK1 proprotein convertase subtilisin/kexin type 1 1175226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14077 PCSK6 proprotein convertase subtilisin/kexin type 6 1047462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14078 PCTP phosphatidylcholine transfer protein 265668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14079 PCYOX1 prenylcysteine oxidase 1 722982 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14080 PDC phosducin 381771 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14081 PDCD10 programmed cell death 10 338169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14082 PDCD1LG2 programmed cell death 1 ligand 2 428922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14083 PDCD2 programmed cell death 2 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14084 PDCD2L programmed cell death 2-like 416754 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14085 PDCD4 programmed cell death 4 (neoplastic transformation inhibitor) 744276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14086 PDCD5 programmed cell death 5 168324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14087 PDCD7 programmed cell death 7 371124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14088 PDCL phosducin-like 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14089 PDDC1 Parkinson disease 7 domain containing 1 103935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14090 PDE12 phosphodiesterase 12 707772 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14091 PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa 1000311 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14092 PDE4DIP phosphodiesterase 4D interacting protein (myomegalin) 2166411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14093 PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta 239811 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14094 PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma 133848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14095 PDE7A phosphodiesterase 7A 737685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14096 PDE7B phosphodiesterase 7B 598767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14097 PDE8A phosphodiesterase 8A 1210716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14098 PDE8B phosphodiesterase 8B 1218321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14099 PDGFC platelet derived growth factor C 538434 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14100 PDGFD platelet derived growth factor D 577980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14101 PDIA3 protein disulfide isomerase family A, member 3 743769 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14102 PDIA6 protein disulfide isomerase family A, member 6 644397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14103 PDIK1L PDLIM1 interacting kinase 1 like 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14104 PDK3 pyruvate dehydrogenase kinase, isozyme 3 602316 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14105 PDLIM1 PDZ and LIM domain 1 (elfin) 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14106 PDLIM2 PDZ and LIM domain 2 (mystique) 176436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14107 PDLIM3 PDZ and LIM domain 3 522210 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14108 PDLIM5 PDZ and LIM domain 5 982566 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14109 PDP1 878631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14110 PDPK1 3-phosphoinositide dependent protein kinase-1 444132 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14111 PDPN podoplanin 374166 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14112 PDPR 1263444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14113 PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2 624624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14114 PDX1 pancreatic and duodenal homeobox 1 155142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14115 PDXK pyridoxal (pyridoxine, vitamin B6) kinase 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14116 PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase 162747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14117 PDYN prodynorphin 391911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14118 PDZD11 PDZ domain containing 11 226629 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14119 PDZD3 PDZ domain containing 3 617526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14120 PDZD9 300144 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14121 PDZK1 PDZ domain containing 1 743769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14122 PEA15 phosphoprotein enriched in astrocytes 15 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14123 PEBP1 phosphatidylethanolamine binding protein 1 223587 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14124 PEBP4 358449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14125 PECAM1 platelet/endothelial cell adhesion molecule (CD31 antigen) 1016028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14126 PECR peroxisomal trans-2-enoyl-CoA reductase 473031 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14127 PELP1 proline, glutamate and leucine rich protein 1 1138215 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14128 PEMT phosphatidylethanolamine N-methyltransferase 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14129 PEPD peptidase D 444639 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14130 PEX11A peroxisomal biogenesis factor 11A 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14131 PEX11G peroxisomal biogenesis factor 11 gamma 97851 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14132 PEX12 peroxisomal biogenesis factor 12 553644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14133 PEX13 peroxisome biogenesis factor 13 573924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14134 PEX14 peroxisomal biogenesis factor 14 468975 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14135 PEX16 peroxisomal biogenesis factor 16 452751 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14136 PEX3 peroxisomal biogenesis factor 3 593190 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14137 PEX5 peroxisomal biogenesis factor 5 1009437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14138 PF4 platelet factor 4 (chemokine (C-X-C motif) ligand 4) 110019 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14139 PF4V1 platelet factor 4 variant 1 89232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14140 PFDN1 prefoldin subunit 1 150579 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14141 PFDN2 prefoldin subunit 2 213447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14142 PFDN4 prefoldin subunit 4 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14143 PFDN5 prefoldin subunit 5 247923 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14144 PFDN6 prefoldin subunit 6 205335 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14145 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 833508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14146 PFN1 profilin 1 151593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14147 PFN2 profilin 2 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14148 PFN4 profilin family, member 4 205842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14149 PGA3 pepsinogen 3, group I (pepsinogen A) 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14150 PGAM1 phosphoglycerate mutase 1 (brain) 353379 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14151 PGAM2 phosphoglycerate mutase 2 (muscle) 338676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14152 PGBD1 piggyBac transposable element derived 1 1244178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14153 PGBD2 piggyBac transposable element derived 2 906009 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14154 PGBD3 piggyBac transposable element derived 3 905502 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14155 PGF placental growth factor 232206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14156 PGGT1B protein geranylgeranyltransferase type I, beta subunit 570882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14157 PGK2 phosphoglycerate kinase 2 637806 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14158 PGLYRP1 peptidoglycan recognition protein 1 294567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14159 PGLYRP4 peptidoglycan recognition protein 4 585078 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14160 PGM2 phosphoglucomutase 2 917670 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14161 PGPEP1 pyroglutamyl-peptidase I 309777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14162 PGPEP1L 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14163 PGRMC1 progesterone receptor membrane component 1 170352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14164 PGRMC2 progesterone receptor membrane component 2 132834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14165 PGS1 phosphatidylglycerophosphate synthase 1 757965 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14166 PHACTR3 phosphatase and actin regulator 3 816270 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14167 PHAX 560235 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14168 PHB prohibitin 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14169 PHB2 prohibitin 2 474045 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14170 PHF1 PHD finger protein 1 892320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14171 PHF10 PHD finger protein 10 680901 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14172 PHF11 PHD finger protein 11 475566 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14173 PHF13 PHD finger protein 13 433485 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14174 PHF17 PHD finger protein 17 1316172 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14175 PHF21A PHD finger protein 21A 1082952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14176 PHF23 PHD finger protein 23 540969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14177 PHF5A PHD finger protein 5A 176943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14178 PHF6 PHD finger protein 6 628173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14179 PHF7 PHD finger protein 7 601302 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14180 PHGDH phosphoglycerate dehydrogenase 836550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14181 PHKA1 phosphorylase kinase, alpha 1 (muscle) 1926600 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14182 PHKG1 phosphorylase kinase, gamma 1 (muscle) 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14183 PHLDA3 pleckstrin homology-like domain, family A, member 3 148551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14184 PHOSPHO2 phosphatase, orphan 2 370110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14185 PHOX2B paired-like homeobox 2b 200772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14186 PHPT1 phosphohistidine phosphatase 1 122187 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14187 PHTF1 putative homeodomain transcription factor 1 1197027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14188 PHYHD1 phytanoyl-CoA dioxygenase domain containing 1 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14189 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 380757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14190 PI15 peptidase inhibitor 15 404079 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14191 PIAS1 protein inhibitor of activated STAT, 1 1005888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14192 PIAS3 protein inhibitor of activated STAT, 3 970905 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14193 PIBF1 progesterone immunomodulatory binding factor 1 1187394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14194 PICALM phosphatidylinositol binding clathrin assembly protein 1029717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14195 PIF1 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) 715884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14196 PIGC phosphatidylinositol glycan anchor biosynthesis, class C 455286 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14197 PIGF phosphatidylinositol glycan anchor biosynthesis, class F 384813 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14198 PIGH phosphatidylinositol glycan anchor biosynthesis, class H 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14199 PIGK phosphatidylinositol glycan anchor biosynthesis, class K 624624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14200 PIGL phosphatidylinositol glycan anchor biosynthesis, class L 338169 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14201 PIGM phosphatidylinositol glycan anchor biosynthesis, class M 646932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14202 PIGN phosphatidylinositol glycan anchor biosynthesis, class N 1097148 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14203 PIGO phosphatidylinositol glycan anchor biosynthesis, class O 1678170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14204 PIGP phosphatidylinositol glycan anchor biosynthesis, class P 210912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14205 PIGS phosphatidylinositol glycan anchor biosynthesis, class S 824382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14206 PIGT phosphatidylinositol glycan anchor biosynthesis, class T 806130 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14207 PIGU phosphatidylinositol glycan anchor biosynthesis, class U 619554 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14208 PIGV phosphatidylinositol glycan anchor biosynthesis, class V 757458 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14209 PIGW phosphatidylinositol glycan anchor biosynthesis, class W 770133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14210 PIGX phosphatidylinositol glycan anchor biosynthesis, class X 376701 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14211 PIGY phosphatidylinositol glycan anchor biosynthesis, class Y 111540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14212 PIGZ phosphatidylinositol glycan anchor biosynthesis, class Z 818805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14213 PIH1D1 PIH1 domain containing 1 460863 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14214 PIH1D2 PIH1 domain containing 2 520182 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14215 PIK3CD phosphoinositide-3-kinase, catalytic, delta polypeptide 1148355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14216 PIK3IP1 phosphoinositide-3-kinase interacting protein 1 177957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14217 PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta) 604851 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14218 PIK3R5 phosphoinositide-3-kinase, regulatory subunit 5 634764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14219 PILRA paired immunoglobin-like type 2 receptor alpha 476580 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14220 PIM1 pim-1 oncogene 399516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14221 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 105456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14222 PIN4 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 246909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14223 PINX1 488241 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14224 PIP prolactin-induced protein 231699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14225 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase, type II, beta 571896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14226 PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 849225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14227 PIRT 189111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14228 PISD phosphatidylserine decarboxylase 490269 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14229 PITPNA phosphatidylinositol transfer protein, alpha 416247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14230 PITPNB phosphatidylinositol transfer protein, beta 436020 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14231 PITPNM3 PITPNM family member 3 685971 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14232 PITX1 paired-like homeodomain 1 314340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14233 PIWIL3 piwi-like 3 (Drosophila) 1383603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14234 PKD2 polycystic kidney disease 2 (autosomal dominant) 1200576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14235 PKDCC 406107 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14236 PKDREJ polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin) 3039972 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14237 PKIA protein kinase (cAMP-dependent, catalytic) inhibitor alpha 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14238 PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta 124215 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14239 PKLR pyruvate kinase, liver and RBC 856323 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14240 PKM2 pyruvate kinase, muscle 855309 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14241 PKN1 protein kinase N1 1174212 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14242 PKNOX1 PBX/knotted 1 homeobox 1 684957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14243 PLA2G10 phospholipase A2, group X 74529 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14244 PLA2G12A phospholipase A2, group XIIA 189618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14245 PLA2G12B phospholipase A2, group XIIB 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14246 PLA2G16 256035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14247 PLA2G1B phospholipase A2, group IB (pancreas) 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14248 PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 226629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14249 PLA2G2E phospholipase A2, group IIE 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14250 PLA2G4B phospholipase A2, group IVB (cytosolic) 1211223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14251 PLA2G4C phospholipase A2, group IVC (cytosolic, calcium-independent) 875082 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14252 PLA2G5 phospholipase A2, group V 219531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14253 PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 694590 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14254 PLAA phospholipase A2-activating protein 1161537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14255 PLAC1 placenta-specific 1 326001 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14256 PLAC4 placenta-specific 4 80106 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14257 PLAC8 placenta-specific 8 182520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14258 PLAC8L1 PLAC8-like 1 278850 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14259 PLAC9 placenta-specific 9 115089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14260 PLAG1 pleiomorphic adenoma gene 1 766077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14261 PLAGL1 pleiomorphic adenoma gene-like 1 709800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14262 PLAUR plasminogen activator, urokinase receptor 525252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14263 PLB1 phospholipase B1 2198859 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14264 PLCD4 phospholipase C, delta 4 1182831 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14265 PLCH2 phospholipase C, eta 2 634257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14266 PLCXD1 phosphatidylinositol-specific phospholipase C, X domain containing 1 445146 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14267 PLD2 phospholipase D2 1411995 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14268 PLD6 170352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14269 PLDN pallidin homolog (mouse) 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14270 PLEK pleckstrin 552123 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14271 PLEKHA3 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 451737 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14272 PLEKHA6 pleckstrin homology domain containing, family A member 6 1329354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14273 PLEKHA7 pleckstrin homology domain containing, family A member 7 1590966 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14274 PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 271245 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14275 PLEKHF1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 214461 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14276 PLEKHG1 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 2138526 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -14277 PLEKHG7 pleckstrin homology domain containing, family G (with RhoGef domain) member 7 600288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14278 PLEKHJ1 pleckstrin homology domain containing, family J member 1 76050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14279 PLEKHM2 pleckstrin homology domain containing, family M (with RUN domain) member 2 448188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14280 PLEKHO1 pleckstrin homology domain containing, family O member 1 618540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14281 PLGLB1 plasminogen-like B1 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14282 PLGLB2 plasminogen-like B2 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14283 PLIN2 680394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14284 PLIN5 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14285 PLK1S1 922740 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14286 PLK3 polo-like kinase 3 (Drosophila) 787371 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14287 PLLP plasma membrane proteolipid (plasmolipin) 215982 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14288 PLN phospholamban 82641 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14289 PLP1 proteolipid protein 1 (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated) 437034 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14290 PLP2 proteolipid protein 2 (colonic epithelium-enriched) 242346 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14291 PLRG1 pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) 813735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14292 PLS1 plastin 1 (I isoform) 988650 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14293 PLSCR1 phospholipid scramblase 1 501423 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14294 PLSCR3 phospholipid scramblase 3 320424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14295 PLSCR4 phospholipid scramblase 4 518154 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14296 PLSCR5 phospholipid scramblase family, member 5 382278 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14297 PLUNC palate, lung and nasal epithelium associated 405093 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14298 PLVAP plasmalemma vesicle associated protein 685971 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14299 PLXDC2 plexin domain containing 2 775710 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14300 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 56277 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14301 PMCH pro-melanin-concentrating hormone 258570 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14302 PML promyelocytic leukemia 1560546 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14303 PMM1 phosphomannomutase 1 274794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14304 PMM2 phosphomannomutase 2 303693 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14305 PMP2 peripheral myelin protein 2 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14306 PMP22 peripheral myelin protein 22 211419 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14307 PMPCB peptidase (mitochondrial processing) beta 771654 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14308 PNKD paroxysmal nonkinesigenic dyskinesia 576966 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14309 PNLIPRP2 pancreatic lipase-related protein 2 681408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14310 PNMA1 paraneoplastic antigen MA1 540462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14311 PNMA3 paraneoplastic antigen MA3 707772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14312 PNMT phenylethanolamine N-methyltransferase 332085 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14313 PNOC prepronociceptin 273273 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14314 PNP 445653 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14315 PNPLA2 patatin-like phospholipase domain containing 2 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14316 PNPLA4 patatin-like phospholipase domain containing 4 398502 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14317 PNPLA5 patatin-like phospholipase domain containing 5 314847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14318 PNPLA7 patatin-like phospholipase domain containing 7 878631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14319 PNPT1 polyribonucleotide nucleotidyltransferase 1 1249248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14320 PNRC1 proline-rich nuclear receptor coactivator 1 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14321 POC1A 631215 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14322 POC1B 738192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14323 POC5 898404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14324 PODXL podocalyxin-like 678366 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14325 PODXL2 podocalyxin-like 2 708786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14326 POF1B premature ovarian failure, 1B 929838 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14327 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 919191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14328 POLD1 polymerase (DNA directed), delta 1, catalytic subunit 125kDa 1212744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14329 POLD3 polymerase (DNA-directed), delta 3, accessory subunit 707265 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14330 POLDIP2 polymerase (DNA-directed), delta interacting protein 2 448188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14331 POLE polymerase (DNA directed), epsilon 3521622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14332 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 77571 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14333 POLG2 polymerase (DNA directed), gamma 2, accessory subunit 755430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14334 POLK polymerase (DNA directed) kappa 1353183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14335 POLM polymerase (DNA directed), mu 622596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14336 POLR1E polymerase (RNA) I polypeptide E, 53kDa 622596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14337 POLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa 371631 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14338 POLR2D polymerase (RNA) II (DNA directed) polypeptide D 186576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14339 POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 110526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14340 POLR2F polymerase (RNA) II (DNA directed) polypeptide F 192660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14341 POLR2G polymerase (RNA) II (DNA directed) polypeptide G 279357 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14342 POLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa 203814 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14343 POLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa 168324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14344 POLR2J2 165789 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14345 POLR2J3 165789 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14346 POLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa 95823 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14347 POLR2L polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa 35997 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14348 POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 537420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14349 POLR3G polymerase (RNA) III (DNA directed) polypeptide G (32kD) 354900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14350 POLR3H polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 283920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14351 POLR3K polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa 113568 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14352 POM121C POM121 membrane glycoprotein C 1001832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14353 POMC proopiomelanocortin (adrenocorticotropin/ beta-lipotropin/ alpha-melanocyte stimulating hormone/ beta-melanocyte stimulating hormone/ beta-endorphin) 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14354 POMGNT1 protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase 1047969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14355 POMP proteasome maturation protein 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14356 POMT1 protein-O-mannosyltransferase 1 1041378 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14357 POMZP3 POM (POM121 homolog, rat) and ZP3 fusion 299130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14358 PON2 paraoxonase 2 518661 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14359 POP1 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) 1589445 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14360 POP4 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) 321945 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14361 POP5 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) 247416 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14362 POP7 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14363 POPDC2 popeye domain containing 2 563277 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14364 POPDC3 popeye domain containing 3 450216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14365 PORCN porcupine homolog (Drosophila) 593697 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14366 POSTN periostin, osteoblast specific factor 1319721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14367 POT1 POT1 protection of telomeres 1 homolog (S. pombe) 996255 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14368 POTEB 907530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14369 POU1F1 POU class 1 homeobox 1 495846 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14370 POU2AF1 POU class 2 associating factor 1 401037 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14371 POU3F1 POU class 3 homeobox 1 209391 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14372 POU3F3 POU class 3 homeobox 3 207870 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14373 POU3F4 POU class 3 homeobox 4 552630 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14374 POU5F1 POU class 5 homeobox 1 542997 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14375 PPA2 pyrophosphatase (inorganic) 2 452244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14376 PPAP2B phosphatidic acid phosphatase type 2B 414219 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14377 PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14378 PPARD peroxisome proliferator-activated receptor delta 688506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14379 PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) 202293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14380 PPCDC phosphopantothenoylcysteine decarboxylase 321945 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14381 PPCS phosphopantothenoylcysteine synthetase 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14382 PPFIA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 1622400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14383 PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 1608204 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14384 PPFIBP2 PTPRF interacting protein, binding protein 2 (liprin beta 2) 1380561 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14385 PPIA peptidylprolyl isomerase A (cyclophilin A) 257556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14386 PPIAL4G 252993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14387 PPIC peptidylprolyl isomerase C (cyclophilin C) 272766 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14388 PPID peptidylprolyl isomerase D (cyclophilin D) 539448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14389 PPIE peptidylprolyl isomerase E (cyclophilin E) 491283 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14390 PPIF peptidylprolyl isomerase F (cyclophilin F) 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14391 PPIG peptidylprolyl isomerase G (cyclophilin G) 1172691 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14392 PPIL1 peptidylprolyl isomerase (cyclophilin)-like 1 252486 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14393 PPIL3 peptidylprolyl isomerase (cyclophilin)-like 3 258570 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14394 PPIL4 peptidylprolyl isomerase (cyclophilin)-like 4 738699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14395 PPIL6 peptidylprolyl isomerase (cyclophilin)-like 6 420303 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14396 PPM1A protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform 717405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14397 PPM1B protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform 774189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14398 PPM1D protein phosphatase 1D magnesium-dependent, delta isoform 749853 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14399 PPM1F protein phosphatase 1F (PP2C domain containing) 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14400 PPM1G protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform 789399 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14401 PPM1J protein phosphatase 1J (PP2C domain containing) 603330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14402 PPM1K protein phosphatase 1K (PP2C domain containing) 579501 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14403 PPM1M protein phosphatase 1M (PP2C domain containing) 411684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14404 PPM1N 343239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14405 PPME1 protein phosphatase methylesterase 1 539448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14406 PPP1CA protein phosphatase 1, catalytic subunit, alpha isoform 453258 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14407 PPP1CB protein phosphatase 1, catalytic subunit, beta isoform 486720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14408 PPP1CC protein phosphatase 1, catalytic subunit, gamma isoform 477087 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14409 PPP1R11 protein phosphatase 1, regulatory (inhibitor) subunit 11 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14410 PPP1R12B protein phosphatase 1, regulatory (inhibitor) subunit 12B 1558011 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14411 PPP1R12C protein phosphatase 1, regulatory (inhibitor) subunit 12C 417261 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14412 PPP1R13B protein phosphatase 1, regulatory (inhibitor) subunit 13B 1685268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14413 PPP1R14B protein phosphatase 1, regulatory (inhibitor) subunit 14B 141453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14414 PPP1R14C protein phosphatase 1, regulatory (inhibitor) subunit 14C 103428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14415 PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D 255021 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14416 PPP1R15A protein phosphatase 1, regulatory (inhibitor) subunit 15A 1030731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14417 PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B (dopamine and cAMP regulated phosphoprotein, DARPP-32) 255528 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14418 PPP1R1C protein phosphatase 1, regulatory (inhibitor) subunit 1C 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14419 PPP1R2 protein phosphatase 1, regulatory (inhibitor) subunit 2 261612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14420 PPP1R3C protein phosphatase 1, regulatory (inhibitor) subunit 3C 486720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14421 PPP1R9B protein phosphatase 1, regulatory (inhibitor) subunit 9B 663663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14422 PPP2CA protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14423 PPP2R1A protein phosphatase 2 (formerly 2A), regulatory subunit A , alpha isoform 886236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14424 PPP2R1B protein phosphatase 2 (formerly 2A), regulatory subunit A, beta isoform 1059123 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14425 PPP2R2A protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform 696111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14426 PPP2R2B protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform 756444 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14427 PPP2R2C protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform 551109 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14428 PPP2R5A protein phosphatase 2, regulatory subunit B', alpha isoform 673296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14429 PPP3CC protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform 781794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14430 PPP3R1 protein phosphatase 3 (formerly 2B), regulatory subunit B, alpha isoform 268710 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14431 PPP3R2 protein phosphatase 3 (formerly 2B), regulatory subunit B, beta isoform 266682 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14432 PPP4R1 protein phosphatase 4, regulatory subunit 1 1456611 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14433 PPP5C protein phosphatase 5, catalytic subunit 591162 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14434 PPP6C protein phosphatase 6, catalytic subunit 479115 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14435 PPPDE1 283413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14436 PPPDE2 172887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14437 PPT1 palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14438 PPTC7 PTC7 protein phosphatase homolog (S. cerevisiae) 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14439 PPY pancreatic polypeptide 98865 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14440 PPYR1 pancreatic polypeptide receptor 1 573924 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14441 PQLC3 PQ loop repeat containing 3 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14442 PRAC 40053 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14443 PRAF2 PRA1 domain family, member 2 146523 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14444 PRAM1 PML-RARA regulated adaptor molecule 1 979524 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14445 PRAMEF1 PRAME family member 1 728559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14446 PRAMEF10 PRAME family member 10 704730 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14447 PRAMEF12 PRAME family member 12 742248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14448 PRAMEF13 PRAME family member 13 276315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14449 PRAMEF14 PRAME family member 14 561249 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14450 PRAMEF16 PRAME family member 16 206856 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14451 PRAMEF18 PRAME family member 18 513591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14452 PRAMEF19 PRAME family member 19 513591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14453 PRAMEF6 PRAME family member 6 640341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14454 PRAP1 proline-rich acidic protein 1 148044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14455 PRB1 proline-rich protein BstNI subfamily 1 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14456 PRB4 proline-rich protein BstNI subfamily 4 383292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14457 PRC1 protein regulator of cytokinesis 1 967356 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14458 PRCC papillary renal cell carcinoma (translocation-associated) 523224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14459 PRCD progressive rod-cone degeneration 44109 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14460 PRDM11 PR domain containing 11 792441 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14461 PRDM5 PR domain containing 5 943020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14462 PRDM7 PR domain containing 7 770133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14463 PRDM9 PR domain containing 9 1381575 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14464 PRDX2 peroxiredoxin 2 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14465 PRDX3 peroxiredoxin 3 384813 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14466 PRDX4 peroxiredoxin 4 373152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14467 PRDX5 peroxiredoxin 5 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14468 PRDX6 peroxiredoxin 6 303186 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14469 PREB prolactin regulatory element binding 536913 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14470 PRELID1 PRELI domain containing 1 301665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14471 PRELID2 PRELI domain containing 2 263133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14472 PRELP proline/arginine-rich end leucine-rich repeat protein 586599 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14473 PRG3 proteoglycan 3 230178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14474 PRH1 proline-rich protein HaeIII subfamily 1 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14475 PRH2 proline-rich protein HaeIII subfamily 2 260091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14476 PRHOXNB parahox cluster neighbor 90753 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14477 PRICKLE4 prickle homolog 4 (Drosophila) 597753 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14478 PRIM1 primase, DNA, polypeptide 1 (49kDa) 545532 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14479 PRIM2 primase, DNA, polypeptide 2 (58kDa) 802074 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14480 PRIMA1 proline rich membrane anchor 1 175422 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14481 PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit 860379 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14482 PRKAB2 protein kinase, AMP-activated, beta 2 non-catalytic subunit 348309 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14483 PRKACB protein kinase, cAMP-dependent, catalytic, beta 633750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14484 PRKACG protein kinase, cAMP-dependent, catalytic, gamma 537420 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14485 PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit 529308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14486 PRKAR1B protein kinase, cAMP-dependent, regulatory, type I, beta 229164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14487 PRKCA protein kinase C, alpha 1049997 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14488 PRKCD protein kinase C, delta 1034787 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14489 PRKCE protein kinase C, epsilon 1127061 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14490 PRKD3 protein kinase D3 1391715 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14491 PRKRIP1 PRKR interacting protein 1 (IL11 inducible) 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14492 PRKX protein kinase, X-linked 413205 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14493 PRL prolactin 356928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14494 PRLH prolactin releasing hormone 85176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14495 PRLHR prolactin releasing hormone receptor 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14496 PRM1 protamine 1 83148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14497 PRM2 protamine 2 160719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14498 PRMT1 protein arginine methyltransferase 1 542490 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14499 PRMT2 protein arginine methyltransferase 2 488748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14500 PRNP prion protein (p27-30) (Creutzfeldt-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia) 387348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14501 PROCA1 520689 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14502 PROCR protein C receptor, endothelial (EPCR) 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14503 PRODH proline dehydrogenase (oxidase) 1 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14504 PROK1 prokineticin 1 167310 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14505 PROKR1 prokineticin receptor 1 603330 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14506 PROKR2 prokineticin receptor 2 589641 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14507 PROL1 proline rich, lacrimal 1 382785 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14508 PROM2 prominin 2 1169142 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14509 PROP1 PROP paired-like homeobox 1 351351 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14510 PROS1 protein S (alpha) 1019577 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14511 PROSC proline synthetase co-transcribed homolog (bacterial) 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14512 PROX2 prospero homeobox 2 910065 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14513 PROZ protein Z, vitamin K-dependent plasma glycoprotein 478608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14514 PRPF18 PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) 541983 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14515 PRPF3 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) 1070784 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14516 PRPF31 PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) 460863 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14517 PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 1282710 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14518 PRPF6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) 1258374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14519 PRPH peripherin 452244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14520 PRPH2 peripherin 2 (retinal degeneration, slow) 533871 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14521 PRPS1 phosphoribosyl pyrophosphate synthetase 1 499395 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14522 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14523 PRPSAP1 phosphoribosyl pyrophosphate synthetase-associated protein 1 519168 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14524 PRR13 proline rich 13 179985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14525 PRR14 proline rich 14 898911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14526 PRR15L 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14527 PRR16 proline rich 16 385320 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14528 PRR19 proline rich 19 547053 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14529 PRR5-ARHGAP8 642876 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14530 PRRC1 proline-rich coiled-coil 1 694590 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14531 PRRG1 proline rich Gla (G-carboxyglutamic acid) 1 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14532 PRRG2 proline rich Gla (G-carboxyglutamic acid) 2 203307 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14533 PRRG3 proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) 358956 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14534 PRRG4 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) 355407 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14535 PRRT1 proline-rich transmembrane protein 1 238290 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14536 PRRT2 proline-rich transmembrane protein 2 524238 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14537 PRRX2 paired related homeobox 2 163761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14538 PRSS1 protease, serine, 1 (trypsin 1) 387348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14539 PRSS16 protease, serine, 16 (thymus) 739206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14540 PRSS2 protease, serine, 2 (trypsin 2) 387348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14541 PRSS21 protease, serine, 21 (testisin) 354900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14542 PRSS22 protease, serine, 22 314340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14543 PRSS27 protease, serine 27 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14544 PRSS3 protease, serine, 3 387348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14545 PRSS38 358956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14546 PRSS42 265161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14547 PRSS45 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14548 PRSS48 488241 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14549 PRSS53 686985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14550 PRSS54 582036 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14551 PRSS55 537420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14552 PRTFDC1 phosphoribosyl transferase domain containing 1 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14553 PSAP prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) 785343 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14554 PSAPL1 prosaposin-like 1 360477 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14555 PSAT1 phosphoserine aminotransferase 1 550095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14556 PSCA prostate stem cell antigen 78585 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14557 PSD3 pleckstrin and Sec7 domain containing 3 1632033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14558 PSD4 pleckstrin and Sec7 domain containing 4 1562574 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14559 PSEN1 presenilin 1 (Alzheimer disease 3) 732108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14560 PSENEN presenilin enhancer 2 homolog (C. elegans) 161226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14561 PSG2 pregnancy specific beta-1-glycoprotein 2 521196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14562 PSG5 pregnancy specific beta-1-glycoprotein 5 521196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14563 PSG7 pregnancy specific beta-1-glycoprotein 7 650988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14564 PSG8 pregnancy specific beta-1-glycoprotein 8 659607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14565 PSMA1 proteasome (prosome, macropain) subunit, alpha type, 1 459342 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14566 PSMA2 proteasome (prosome, macropain) subunit, alpha type, 2 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14567 PSMA3 proteasome (prosome, macropain) subunit, alpha type, 3 411684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14568 PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 414726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14569 PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14570 PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 342225 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14571 PSMA8 proteasome (prosome, macropain) subunit, alpha type, 8 405093 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14572 PSMB1 proteasome (prosome, macropain) subunit, beta type, 1 372138 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14573 PSMB10 proteasome (prosome, macropain) subunit, beta type, 10 350337 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14574 PSMB11 proteasome (prosome, macropain) subunit, beta type, 11 459342 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14575 PSMB2 proteasome (prosome, macropain) subunit, beta type, 2 294567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14576 PSMB3 proteasome (prosome, macropain) subunit, beta type, 3 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14577 PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 417261 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14578 PSMB5 proteasome (prosome, macropain) subunit, beta type, 5 407628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14579 PSMB7 proteasome (prosome, macropain) subunit, beta type, 7 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14580 PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2) 314340 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14581 PSMC1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 689520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14582 PSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2 684450 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14583 PSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3 625131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14584 PSMC3IP PSMC3 interacting protein 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14585 PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 591669 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14586 PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 355407 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14587 PSMD11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 621582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14588 PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 660621 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14589 PSMD13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 590655 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14590 PSMD14 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 493311 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14591 PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 468975 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14592 PSME1 proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) 423345 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14593 PSME2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) 387348 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14594 PSME3 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 429936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14595 PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) 427908 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14596 PSMG1 proteasome (prosome, macropain) assembly chaperone 1 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14597 PSMG3 proteasome (prosome, macropain) assembly chaperone 3 190632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14598 PSORS1C1 psoriasis susceptibility 1 candidate 1 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14599 PSORS1C2 psoriasis susceptibility 1 candidate 2 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14600 PSPC1 paraspeckle component 1 815256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14601 PSPH phosphoserine phosphatase 353886 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14602 PSPN persephin 76557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14603 PSRC1 proline/serine-rich coiled-coil 1 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14604 PSTPIP2 proline-serine-threonine phosphatase interacting protein 2 466440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14605 PTAFR platelet-activating factor receptor 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14606 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 583557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14607 PTBP2 polypyrimidine tract binding protein 2 831480 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14608 PTCD1 pentatricopeptide repeat domain 1 1069770 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14609 PTCH2 patched homolog 2 (Drosophila) 1686789 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14610 PTDSS1 phosphatidylserine synthase 1 746811 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14611 PTER phosphotriesterase related 540462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14612 PTF1A pancreas specific transcription factor, 1a 142974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14613 PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14614 PTGER4 prostaglandin E receptor 4 (subtype EP4) 628173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14615 PTGES prostaglandin E synthase 110019 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14616 PTGES2 prostaglandin E synthase 2 372645 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14617 PTGES3 prostaglandin E synthase 3 (cytosolic) 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14618 PTGIR prostaglandin I2 (prostacyclin) receptor (IP) 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14619 PTGIS prostaglandin I2 (prostacyclin) synthase 663663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14620 PTGR1 520182 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14621 PTGR2 553644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14622 PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 934908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14623 PTH parathyroid hormone 180492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14624 PTHLH parathyroid hormone-like hormone 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14625 PTK6 PTK6 protein tyrosine kinase 6 240825 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14626 PTMA prothymosin, alpha 171366 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14627 PTN pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1) 265161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14628 PTOV1 prostate tumor overexpressed gene 1 494325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14629 PTP4A1 protein tyrosine phosphatase type IVA, member 1 274794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14630 PTP4A2 protein tyrosine phosphatase type IVA, member 2 265668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14631 PTP4A3 protein tyrosine phosphatase type IVA, member 3 82134 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14632 PTPDC1 protein tyrosine phosphatase domain containing 1 1289301 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14633 PTPLB protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14634 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 218010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14635 PTPN1 protein tyrosine phosphatase, non-receptor type 1 649467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14636 PTPN11 protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1) 924768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14637 PTPN21 protein tyrosine phosphatase, non-receptor type 21 1527591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14638 PTPN23 protein tyrosine phosphatase, non-receptor type 23 1897701 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14639 PTPN3 protein tyrosine phosphatase, non-receptor type 3 1440894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14640 PTPN6 protein tyrosine phosphatase, non-receptor type 6 844662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14641 PTPN9 protein tyrosine phosphatase, non-receptor type 9 895869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14642 PTPRK protein tyrosine phosphatase, receptor type, K 2211027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14643 PTPRN protein tyrosine phosphatase, receptor type, N 1410981 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14644 PTRF polymerase I and transcript release factor 387855 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14645 PTRH1 peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14646 PTRH2 peptidyl-tRNA hydrolase 2 275808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14647 PTS 6-pyruvoyltetrahydropterin synthase 190125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14648 PTTG1 pituitary tumor-transforming 1 318903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14649 PTTG1IP pituitary tumor-transforming 1 interacting protein 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14650 PTTG2 pituitary tumor-transforming 2 294060 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14651 PTX4 556179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14652 PURA purine-rich element binding protein A 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14653 PURB purine-rich element binding protein B 155142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14654 PURG purine-rich element binding protein G 420810 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14655 PUS1 pseudouridylate synthase 1 421317 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14656 PUS3 pseudouridylate synthase 3 739206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14657 PUS7 pseudouridylate synthase 7 homolog (S. cerevisiae) 1037322 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14658 PUS7L pseudouridylate synthase 7 homolog (S. cerevisiae)-like 1083966 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14659 PVR poliovirus receptor 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14660 PVRL4 poliovirus receptor-related 4 795483 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14661 PWP1 PWP1 homolog (S. cerevisiae) 793962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14662 PXMP2 peroxisomal membrane protein 2, 22kDa 244374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14663 PXT1 peroxisomal, testis specific 1 123708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14664 PYCR2 pyrroline-5-carboxylate reductase family, member 2 466440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14665 PYDC1 PYD (pyrin domain) containing 1 127764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14666 PYDC2 151086 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14667 PYGO1 pygopus homolog 1 (Drosophila) 644904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14668 PYGO2 pygopus homolog 2 (Drosophila) 467454 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14669 PYROXD2 905502 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14670 PYY peptide YY 57291 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14671 ProSAPiP1 478608 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14672 QDPR quinoid dihydropteridine reductase 315354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14673 QKI quaking homolog, KH domain RNA binding (mouse) 515112 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14674 QPRT quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) 392418 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14675 QRFP pyroglutamylated RFamide peptide 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14676 QRFPR 597753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14677 QRICH1 glutamine-rich 1 1200069 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14678 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 812721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14679 QSOX1 quiescin Q6 sulfhydryl oxidase 1 1023126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14680 QSOX2 quiescin Q6 sulfhydryl oxidase 2 917670 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14681 QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 648960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14682 R3HDM1 R3H domain containing 1 1690338 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14683 R3HDM2 R3H domain containing 2 993720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14684 RAB10 RAB10, member RAS oncogene family 317889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14685 RAB11B RAB11B, member RAS oncogene family 293046 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14686 RAB11FIP2 RAB11 family interacting protein 2 (class I) 790413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14687 RAB11FIP5 RAB11 family interacting protein 5 (class I) 790920 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14688 RAB12 RAB12, member RAS oncogene family 220545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14689 RAB13 RAB13, member RAS oncogene family 310284 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14690 RAB14 RAB14, member RAS oncogene family 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14691 RAB15 RAB15, member RAS onocogene family 267189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14692 RAB17 RAB17, member RAS oncogene family 333606 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14693 RAB18 RAB18, member RAS oncogene family 292539 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14694 RAB19 RAB19, member RAS oncogene family 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14695 RAB1B RAB1B, member RAS oncogene family 309777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14696 RAB20 RAB20, member RAS oncogene family 307749 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14697 RAB22A RAB22A, member RAS oncogene family 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14698 RAB23 RAB23, member RAS oncogene family 374166 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14699 RAB26 RAB26, member RAS oncogene family 134355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14700 RAB27A RAB27A, member RAS oncogene family 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14701 RAB27B RAB27B, member RAS oncogene family 343239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14702 RAB31 RAB31, member RAS oncogene family 234234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14703 RAB32 RAB32, member RAS oncogene family 270231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14704 RAB33B RAB33B, member RAS oncogene family 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14705 RAB34 RAB34, member RAS oncogene family 371631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14706 RAB35 RAB35, member RAS oncogene family 291018 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14707 RAB37 RAB37, member RAS oncogene family 407121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14708 RAB38 RAB38, member RAS oncogene family 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14709 RAB39 RAB39, member RAS oncogene family 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14710 RAB3A RAB3A, member RAS oncogene family 344253 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14711 RAB3B RAB3B, member RAS oncogene family 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14712 RAB3D RAB3D, member RAS oncogene family 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14713 RAB3IP RAB3A interacting protein (rabin3) 747825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14714 RAB40B RAB40B, member RAS oncogene family 337155 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14715 RAB40C RAB40C, member RAS oncogene family 176943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14716 RAB41 RAB41, member RAS oncogene family 353886 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14717 RAB4A RAB4A, member RAS oncogene family 329550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14718 RAB4B RAB4B, member RAS oncogene family 328029 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14719 RAB5A RAB5A, member RAS oncogene family 338676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14720 RAB5B RAB5B, member RAS oncogene family 338676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14721 RAB6B RAB6B, member RAS oncogene family 334113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14722 RAB6C RAB6C, member RAS oncogene family 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14723 RAB7A RAB7A, member RAS oncogene family 326508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14724 RAB7L1 RAB7, member RAS oncogene family-like 1 318903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14725 RAB8A RAB8A, member RAS oncogene family 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14726 RAB8B RAB8B, member RAS oncogene family 269724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14727 RAB9A RAB9A, member RAS oncogene family 309270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14728 RABEPK Rab9 effector protein with kelch motifs 581529 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14729 RABGAP1 RAB GTPase activating protein 1 1624935 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14730 RABIF RAB interacting factor 126750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14731 RABL2B RAB, member of RAS oncogene family-like 2B 376701 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14732 RABL3 RAB, member of RAS oncogene family-like 3 202293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14733 RABL5 RAB, member RAS oncogene family-like 5 271245 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14734 RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 316875 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14735 RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 198237 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14736 RACGAP1 Rac GTPase activating protein 1 995241 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14737 RAD1 RAD1 homolog (S. pombe) 440583 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14738 RAD23A RAD23 homolog A (S. cerevisiae) 532857 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14739 RAD23B RAD23 homolog B (S. cerevisiae) 608400 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14740 RAD51 RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) 535392 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14741 RAD51AP2 1770444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14742 RAD51C RAD51 homolog C (S. cerevisiae) 593697 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14743 RAD51L1 RAD51-like 1 (S. cerevisiae) 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14744 RAD51L3 RAD51-like 3 (S. cerevisiae) 613470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14745 RAD52 RAD52 homolog (S. cerevisiae) 659607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14746 RAD54L2 RAD54-like 2 (S. cerevisiae) 2147652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14747 RAD9B RAD9 homolog B (S. cerevisiae) 602823 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14748 RAET1E retinoic acid early transcript 1E 409656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14749 RAET1G retinoic acid early transcript 1G 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14750 RAET1L retinoic acid early transcript 1L 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14751 RAG1AP1 recombination activating gene 1 activating protein 1 349830 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14752 RAG2 recombination activating gene 2 805116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14753 RALA v-ral simian leukemia viral oncogene homolog A (ras related) 322959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14754 RALB v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) 322959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14755 RALBP1 ralA binding protein 1 994227 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14756 RALGAPA1 3201198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14757 RALGDS ral guanine nucleotide dissociation stimulator 640341 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14758 RALGPS1 Ral GEF with PH domain and SH3 binding motif 1 885222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14759 RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 926796 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14760 RAMP1 receptor (G protein-coupled) activity modifying protein 1 168324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14761 RAMP2 receptor (G protein-coupled) activity modifying protein 2 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14762 RANBP1 RAN binding protein 1 85176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14763 RANBP10 RAN binding protein 10 769626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14764 RANGRF RAN guanine nucleotide release factor 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14765 RAP1A RAP1A, member of RAS oncogene family 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14766 RAP1B RAP1B, member of RAS oncogene family 293553 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14767 RAP1GAP RAP1 GTPase activating protein 672282 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14768 RAP1GAP2 680901 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14769 RAP2C RAP2C, member of RAS oncogene family 283920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14770 RAPGEF5 Rap guanine nucleotide exchange factor (GEF) 5 1097148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14771 RAPGEFL1 Rap guanine nucleotide exchange factor (GEF)-like 1 530829 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14772 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 1458639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14773 RAPSN receptor-associated protein of the synapse 430443 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14774 RARRES2 retinoic acid receptor responder (tazarotene induced) 2 129792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14775 RARRES3 retinoic acid receptor responder (tazarotene induced) 3 259077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14776 RASA3 RAS p21 protein activator 3 625638 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14777 RASD2 RASD family, member 2 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14778 RASEF RAS and EF-hand domain containing 940992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14779 RASGEF1A RasGEF domain family, member 1A 428922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14780 RASGEF1B RasGEF domain family, member 1B 744783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14781 RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2 1877928 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14782 RASGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) 1222377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14783 RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) 1083459 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14784 RASL10B RAS-like, family 10, member B 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14785 RASL11A RAS-like, family 11, member A 312819 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14786 RASL12 RAS-like, family 12 335127 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14787 RASSF1 Ras association (RalGDS/AF-6) domain family member 1 375687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14788 RASSF2 Ras association (RalGDS/AF-6) domain family member 2 484692 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14789 RASSF3 Ras association (RalGDS/AF-6) domain family member 3 315354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14790 RASSF4 Ras association (RalGDS/AF-6) domain family member 4 457314 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14791 RASSF6 Ras association (RalGDS/AF-6) domain family member 6 509535 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14792 RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14793 RASSF9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14794 RAVER2 ribonucleoprotein, PTB-binding 2 928824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14795 RAX retina and anterior neural fold homeobox 161733 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14796 RBBP4 retinoblastoma binding protein 4 662142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14797 RBBP7 retinoblastoma binding protein 7 662142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14798 RBBP8 retinoblastoma binding protein 8 1398813 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14799 RBKS ribokinase 504972 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14800 RBM10 RNA binding motif protein 10 1307046 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14801 RBM11 RNA binding motif protein 11 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14802 RBM15B RNA binding motif protein 15B 960258 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14803 RBM18 RNA binding motif protein 18 300651 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14804 RBM22 RNA binding motif protein 22 662649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14805 RBM28 RNA binding motif protein 28 1192971 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14806 RBM3 RNA binding motif (RNP1, RRM) protein 3 217503 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14807 RBM38 RNA binding motif protein 38 174408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14808 RBM39 RNA binding motif protein 39 840099 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14809 RBM4 RNA binding motif protein 4 559221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14810 RBM43 RNA binding motif protein 43 549081 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14811 RBM45 RNA binding motif protein 45 696618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14812 RBM46 RNA binding motif protein 46 820326 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14813 RBM7 RNA binding motif protein 7 416247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14814 RBMS2 RNA binding motif, single stranded interacting protein 2 646932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14815 RBMS3 RNA binding motif, single stranded interacting protein 698646 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14816 RBMX RNA binding motif protein, X-linked 612456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14817 RBMX2 RNA binding motif protein, X-linked 2 495339 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14818 RBMXL1 596739 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14819 RBP2 retinol binding protein 2, cellular 213447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14820 RBP3 retinol binding protein 3, interstitial 1137201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14821 RBP4 retinol binding protein 4, plasma 202293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14822 RBP5 retinol binding protein 5, cellular 214968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14823 RBP7 retinol binding protein 7, cellular 174408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14824 RBPJ recombination signal binding protein for immunoglobulin kappa J region 773175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14825 RBPMS RNA binding protein with multiple splicing 392925 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14826 RBPMS2 RNA binding protein with multiple splicing 2 264654 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14827 RBX1 ring-box 1 134355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14828 RCAN1 regulator of calcineurin 1 303693 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14829 RCAN2 regulator of calcineurin 2 309270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14830 RCAN3 RCAN family member 3 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14831 RCC1 regulator of chromosome condensation 1 518154 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14832 RCC2 regulator of chromosome condensation 2 668226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14833 RCE1 RCE1 homolog, prenyl protein peptidase (S. cerevisiae) 417261 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14834 RCHY1 ring finger and CHY zinc finger domain containing 1 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14835 RCL1 RNA terminal phosphate cyclase-like 1 516126 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14836 RCN2 reticulocalbin 2, EF-hand calcium binding domain 422838 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14837 RCN3 reticulocalbin 3, EF-hand calcium binding domain 302679 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14838 RCOR2 REST corepressor 2 495846 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14839 RCVRN recoverin 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14840 RD3 retinal degeneration 3 169338 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14841 RDH10 retinol dehydrogenase 10 (all-trans) 383799 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14842 RDH13 retinol dehydrogenase 13 (all-trans/9-cis) 366561 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14843 RDH8 retinol dehydrogenase 8 (all-trans) 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14844 RDM1 RAD52 motif 1 483678 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14845 RECK reversion-inducing-cysteine-rich protein with kazal motifs 1468272 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14846 RECQL RecQ protein-like (DNA helicase Q1-like) 1017042 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14847 REEP2 receptor accessory protein 2 397488 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14848 REEP3 receptor accessory protein 3 376194 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14849 REEP4 receptor accessory protein 4 312819 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14850 REEP5 receptor accessory protein 5 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14851 REG1A regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein) 264147 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14852 REG1B regenerating islet-derived 1 beta (pancreatic stone protein, pancreatic thread protein) 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14853 REG4 regenerating islet-derived family, member 4 302679 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14854 RELB v-rel reticuloendotheliosis viral oncogene homolog B, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (avian) 790920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14855 RELL1 RELT-like 1 379236 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14856 RELT RELT tumor necrosis factor receptor 558714 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14857 REM2 RAS (RAD and GEM)-like GTP binding 2 322452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14858 REN renin 635778 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14859 REPIN1 replication initiator 1 334620 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14860 REPS1 RALBP1 associated Eps domain containing 1 1173198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14861 REPS2 RALBP1 associated Eps domain containing 2 901446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14862 RER1 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14863 RETN resistin 103428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14864 REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) 655551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14865 RFC2 replication factor C (activator 1) 2, 40kDa 479115 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14866 RFC3 replication factor C (activator 1) 3, 38kDa 540462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14867 RFC5 replication factor C (activator 1) 5, 36.5kDa 505986 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14868 RFESD Rieske (Fe-S) domain containing 246909 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14869 RFK riboflavin kinase 201786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14870 RFPL2 ret finger protein-like 2 588120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14871 RFPL4B ret finger protein-like 4B 403572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14872 RFT1 RFT1 homolog (S. cerevisiae) 816777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14873 RFTN1 raftlin, lipid raft linker 1 898911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14874 RFWD2 ring finger and WD repeat domain 2 945555 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14875 RFWD3 ring finger and WD repeat domain 3 1194492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14876 RFX5 regulatory factor X, 5 (influences HLA class II expression) 956709 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14877 RFXAP regulatory factor X-associated protein 142467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14878 RG9MTD1 RNA (guanine-9-) methyltransferase domain containing 1 616512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14879 RG9MTD3 RNA (guanine-9-) methyltransferase domain containing 3 498381 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14880 RGL1 ral guanine nucleotide dissociation stimulator-like 1 1259388 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14881 RGL3 ral guanine nucleotide dissociation stimulator-like 3 922740 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14882 RGL4 ral guanine nucleotide dissociation stimulator-like 4 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14883 RGMA RGM domain family, member A 388869 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14884 RGN regucalcin (senescence marker protein-30) 405600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14885 RGP1 RGP1 retrograde golgi transport homolog (S. cerevisiae) 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14886 RGR retinal G protein coupled receptor 464412 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14887 RGS10 regulator of G-protein signaling 10 260091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14888 RGS13 regulator of G-protein signaling 13 251472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14889 RGS16 regulator of G-protein signaling 16 294567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14890 RGS18 regulator of G-protein signaling 18 369096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14891 RGS19 regulator of G-protein signaling 19 277836 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14892 RGS2 regulator of G-protein signaling 2, 24kDa 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14893 RGS21 regulator of G-protein signaling 21 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14894 RGS6 regulator of G-protein signaling 6 751881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14895 RGS7BP regulator of G-protein signaling 7 binding protein 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14896 RGS8 regulator of G-protein signaling 8 330057 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14897 RHAG Rh-associated glycoprotein 643890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14898 RHBDD1 rhomboid domain containing 1 492804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14899 RHBDF1 rhomboid 5 homolog 1 (Drosophila) 589641 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14900 RHBDL2 rhomboid, veinlet-like 2 (Drosophila) 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14901 RHBDL3 rhomboid, veinlet-like 3 (Drosophila) 539448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14902 RHBG Rh family, B glycoprotein 718926 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14903 RHCE Rh blood group, CcEe antigens 559221 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14904 RHEB Ras homolog enriched in brain 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14905 RHOBTB1 Rho-related BTB domain containing 1 1078389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14906 RHOBTB2 Rho-related BTB domain containing 2 1125033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14907 RHOC ras homolog gene family, member C 303186 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14908 RHOD ras homolog gene family, member D 254007 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14909 RHOF ras homolog gene family, member F (in filopodia) 213954 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14910 RHOG ras homolog gene family, member G (rho G) 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14911 RHOH ras homolog gene family, member H 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14912 RHOJ ras homolog gene family, member J 337155 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14913 RHOQ ras homolog gene family, member Q 251979 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14914 RHOU ras homolog gene family, member U 265161 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14915 RHOV ras homolog gene family, member V 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14916 RHOXF1 Rhox homeobox family, member 1 83655 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14917 RHOXF2B Rhox homeobox family, member 2B 467961 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14918 RHPN2 rhophilin, Rho GTPase binding protein 2 1038336 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14919 RIBC2 RIB43A domain with coiled-coils 2 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14920 RICH2 1023126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14921 RILPL1 Rab interacting lysosomal protein-like 1 428415 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -14922 RILPL2 Rab interacting lysosomal protein-like 2 156663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14923 RIMKLB 598767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14924 RIN3 Ras and Rab interactor 3 1238601 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14925 RIOK1 RIO kinase 1 (yeast) 861900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14926 RIOK3 RIO kinase 3 (yeast) 808158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14927 RIPK2 receptor-interacting serine-threonine kinase 2 755430 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14928 RIPPLY1 ripply1 homolog (zebrafish) 239304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14929 RIPPLY2 ripply2 homolog (zebrafish) 112047 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14930 RIT1 Ras-like without CAAX 1 344760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14931 RIT2 Ras-like without CAAX 2 341718 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14932 RLIM 956709 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14933 RLN2 relaxin 2 286962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14934 RLN3 relaxin 3 221559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14935 RLTPR RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing 876603 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14936 RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae) 540462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14937 RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14938 RNASE10 ribonuclease, RNase A family, 10 (non-active) 332085 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14939 RNASE12 ribonuclease, RNase A family, 12 (non-active) 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14940 RNASE13 ribonuclease, RNase A family, 13 (non-active) 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14941 RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) 248430 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14942 RNASE4 ribonuclease, RNase A family, 4 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14943 RNASE6 ribonuclease, RNase A family, k6 231699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14944 RNASE7 ribonuclease, RNase A family, 7 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14945 RNASEH1 ribonuclease H1 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14946 RNASEH2A ribonuclease H2, subunit A 406107 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14947 RNASEH2B ribonuclease H2, subunit B 463905 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14948 RNASEH2C ribonuclease H2, subunit C 169845 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14949 RNASEK ribonuclease, RNase K 56277 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14950 RNASET2 ribonuclease T2 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14951 RND1 Rho family GTPase 1 364533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14952 RND2 Rho family GTPase 2 300651 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14953 RND3 Rho family GTPase 3 382785 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14954 RNF103 ring finger protein 103 1049490 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14955 RNF11 ring finger protein 11 235755 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14956 RNF112 427401 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14957 RNF114 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14958 RNF115 421317 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14959 RNF122 ring finger protein 122 234741 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14960 RNF125 ring finger protein 125 279864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14961 RNF13 ring finger protein 13 599274 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14962 RNF130 ring finger protein 130 529815 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14963 RNF133 ring finger protein 133 575445 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14964 RNF139 ring finger protein 139 993720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14965 RNF141 ring finger protein 141 361491 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14966 RNF145 ring finger protein 145 1074840 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14967 RNF146 ring finger protein 146 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14968 RNF148 ring finger protein 148 467454 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14969 RNF149 ring finger protein 149 436527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14970 RNF150 ring finger protein 150 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14971 RNF152 ring finger protein 152 186576 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14972 RNF165 ring finger protein 165 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14973 RNF167 ring finger protein 167 550602 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14974 RNF17 ring finger protein 17 2539563 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14975 RNF170 ring finger protein 170 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14976 RNF175 ring finger protein 175 445146 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14977 RNF181 ring finger protein 181 243360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14978 RNF183 ring finger protein 183 295074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14979 RNF185 ring finger protein 185 303693 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14980 RNF186 ring finger protein 186 348816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14981 RNF19B ring finger protein 19B 822354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14982 RNF2 ring finger protein 2 524745 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14983 RNF215 ring finger protein 215 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14984 RNF216 ring finger protein 216 1437852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14985 RNF217 ring finger protein 217 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14986 RNF24 ring finger protein 24 240318 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14987 RNF25 ring finger protein 25 719940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14988 RNF26 ring finger protein 26 662142 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14989 RNF32 ring finger protein 32 568347 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14990 RNF34 ring finger protein 34 581022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14991 RNF38 ring finger protein 38 809172 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -14992 RNF39 ring finger protein 39 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14993 RNF4 ring finger protein 4 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14994 RNF5 ring finger protein 5 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14995 RNF7 ring finger protein 7 88725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14996 RNF8 ring finger protein 8 744783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14997 RNFT1 ring finger protein, transmembrane 1 650988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14998 RNGTT RNA guanylyltransferase and 5'-phosphatase 941499 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -14999 RNH1 ribonuclease/angiogenin inhibitor 1 211419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15000 RNMT RNA (guanine-7-) methyltransferase 745797 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15001 RNMTL1 RNA methyltransferase like 1 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15002 RNPEP arginyl aminopeptidase (aminopeptidase B) 783822 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15003 RNPEPL1 arginyl aminopeptidase (aminopeptidase B)-like 1 236262 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15004 RNPS1 RNA binding protein S1, serine-rich domain 366054 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15005 ROBO3 roundabout, axon guidance receptor, homolog 3 (Drosophila) 1911390 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15006 ROGDI rogdi homolog (Drosophila) 132327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15007 ROM1 retinal outer segment membrane protein 1 536913 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15008 ROMO1 125736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15009 RORA RAR-related orphan receptor A 958737 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15010 RORB RAR-related orphan receptor B 714363 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15011 RP9 retinitis pigmentosa 9 (autosomal dominant) 270738 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15012 RPA2 replication protein A2, 32kDa 419289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15013 RPA3 replication protein A3, 14kDa 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15014 RPA4 replication protein A4, 34kDa 400530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15015 RPAIN RPA interacting protein 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15016 RPE ribulose-5-phosphate-3-epimerase 389883 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15017 RPF1 550602 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15018 RPF2 483678 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15019 RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 1997073 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15020 RPIA ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) 367575 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15021 RPL10 ribosomal protein L10 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15022 RPL10A ribosomal protein L10a 316368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15023 RPL10L ribosomal protein L10-like 329043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15024 RPL11 ribosomal protein L11 226122 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15025 RPL12 ribosomal protein L12 227136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15026 RPL13 ribosomal protein L13 133341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15027 RPL14 ribosomal protein L14 337155 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15028 RPL15 ribosomal protein L15 317889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15029 RPL21 ribosomal protein L21 255021 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15030 RPL22 ribosomal protein L22 196209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15031 RPL22L1 ribosomal protein L22-like 1 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15032 RPL23 ribosomal protein L23 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15033 RPL23A ribosomal protein L23a 234234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15034 RPL24 ribosomal protein L24 218010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15035 RPL26L1 ribosomal protein L26-like 1 228150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15036 RPL27 ribosomal protein L27 216489 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15037 RPL27A ribosomal protein L27a 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15038 RPL28 ribosomal protein L28 184041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15039 RPL3 ribosomal protein L3 568347 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15040 RPL30 ribosomal protein L30 184548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15041 RPL31 ribosomal protein L31 232713 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15042 RPL32 ribosomal protein L32 212940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15043 RPL34 ribosomal protein L34 187590 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15044 RPL35A ribosomal protein L35a 176943 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15045 RPL36A ribosomal protein L36a 172887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15046 RPL36AL ribosomal protein L36a-like 164775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15047 RPL37 ribosomal protein L37 157170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15048 RPL37A ribosomal protein L37a 149565 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15049 RPL38 ribosomal protein L38 116103 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15050 RPL39 ribosomal protein L39 81627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15051 RPL39L ribosomal protein L39-like 81120 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15052 RPL6 ribosomal protein L6 451737 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15053 RPL7 ribosomal protein L7 390897 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15054 RPL7A ribosomal protein L7a 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15055 RPL7L1 ribosomal protein L7-like 1 387855 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15056 RPL8 ribosomal protein L8 369096 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15057 RPL9 ribosomal protein L9 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15058 RPLP0 ribosomal protein, large, P0 485199 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15059 RPLP1 ribosomal protein, large, P1 144495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15060 RPN2 ribophorin II 1013493 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15061 RPP21 ribonuclease P/MRP 21kDa subunit 214968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15062 RPRD1A 411684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15063 RPRM reprimo, TP53 dependent G2 arrest mediator candidate 100386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15064 RPS11 ribosomal protein S11 251979 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15065 RPS12 ribosomal protein S12 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15066 RPS13 ribosomal protein S13 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15067 RPS15A ribosomal protein S15a 207363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15068 RPS16 ribosomal protein S16 233727 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15069 RPS18 ribosomal protein S18 241332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15070 RPS19 ribosomal protein S19 232206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15071 RPS19BP1 ribosomal protein S19 binding protein 1 175929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15072 RPS20 ribosomal protein S20 187083 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15073 RPS23 ribosomal protein S23 223080 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15074 RPS24 ribosomal protein S24 219024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15075 RPS25 ribosomal protein S25 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15076 RPS26 ribosomal protein S26 184548 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15077 RPS27A ribosomal protein S27a 248937 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15078 RPS29 ribosomal protein S29 116103 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15079 RPS3 ribosomal protein S3 383292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15080 RPS3A ribosomal protein S3A 381771 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15081 RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 1204632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15082 RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 756951 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15083 RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 1598064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15084 RPS7 ribosomal protein S7 230178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15085 RPS8 ribosomal protein S8 330057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15086 RPS9 ribosomal protein S9 299130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15087 RPSA ribosomal protein SA 462384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15088 RPTOR 1641666 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15089 RPUSD2 RNA pseudouridylate synthase domain containing 2 607386 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15090 RPUSD3 RNA pseudouridylate synthase domain containing 3 488241 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15091 RPUSD4 RNA pseudouridylate synthase domain containing 4 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15092 RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15093 RRAGA Ras-related GTP binding A 462891 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15094 RRAGC Ras-related GTP binding C 500409 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15095 RRAS related RAS viral (r-ras) oncogene homolog 252993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15096 RRAS2 related RAS viral (r-ras) oncogene homolog 2 267189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15097 RRH retinal pigment epithelium-derived rhodopsin homolog 528294 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15098 RRM1 ribonucleotide reductase M1 1233024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15099 RRM2B ribonucleotide reductase M2 B (TP53 inducible) 544011 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15100 RRP1B ribosomal RNA processing 1 homolog B (S. cerevisiae) 966342 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15101 RRP7A 272766 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15102 RRP8 657072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15103 RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) 684957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15104 RSBN1L round spermatid basic protein 1-like 1155960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15105 RSC1A1 regulatory solute carrier protein, family 1, member 1 942006 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15106 RSL1D1 ribosomal L1 domain containing 1 764556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15107 RSL24D1 261612 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15108 RSPH6A 1094106 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15109 RSPO1 R-spondin homolog (Xenopus laevis) 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15110 RSPO3 R-spondin 3 homolog (Xenopus laevis) 425373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15111 RSPO4 R-spondin family, member 4 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15112 RSPRY1 ring finger and SPRY domain containing 1 887757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15113 RSRC1 arginine/serine-rich coiled-coil 1 527787 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15114 RSRC2 arginine/serine-rich coiled-coil 2 699153 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15115 RSU1 Ras suppressor protein 1 439062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15116 RTBDN retbindin 334620 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15117 RTCD1 RNA terminal phosphate cyclase domain 1 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15118 RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 957216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15119 RTP1 receptor (chemosensory) transporter protein 1 405600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15120 RTP3 receptor (chemosensory) transporter protein 3 358449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15121 RTP4 receptor (chemosensory) transporter protein 4 379743 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15122 RUFY2 RUN and FYVE domain containing 2 1012986 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15123 RUFY4 RUN and FYVE domain containing 4 565305 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15124 RUNDC1 RUN domain containing 1 689520 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15125 RUNDC2A RUN domain containing 2A 582543 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15126 RUNDC3A RUN domain containing 3A 361491 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15127 RUNDC3B RUN domain containing 3B 681408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15128 RUNX2 runt-related transcription factor 2 653523 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15129 RUSC1 RUN and SH3 domain containing 1 1352169 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15130 RUVBL1 RuvB-like 1 (E. coli) 717405 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15131 RUVBL2 RuvB-like 2 (E. coli) 633243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15132 RWDD1 RWD domain containing 1 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15133 RWDD2B RWD domain containing 2B 460863 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15134 RWDD4A RWD domain containing 4A 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15135 RXFP2 relaxin/insulin-like family peptide receptor 2 1184859 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15136 RXRA retinoid X receptor, alpha 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15137 RXRB retinoid X receptor, beta 592176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15138 RXRG retinoid X receptor, gamma 754923 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15139 RYBP RING1 and YY1 binding protein 341211 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15140 RYK RYK receptor-like tyrosine kinase 822354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15141 S100A1 S100 calcium binding protein A1 148551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15142 S100A11 S100 calcium binding protein A11 167310 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15143 S100A12 S100 calcium binding protein A12 145509 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15144 S100A13 S100 calcium binding protein A13 154635 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15145 S100A14 S100 calcium binding protein A14 153621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15146 S100A16 S100 calcium binding protein A16 162240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15147 S100A2 S100 calcium binding protein A2 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15148 S100A3 S100 calcium binding protein A3 159198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15149 S100A4 S100 calcium binding protein A4 159198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15150 S100A5 S100 calcium binding protein A5 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15151 S100A7 S100 calcium binding protein A7 159198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15152 S100A7L2 S100 calcium binding protein A7-like 2 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15153 S100A8 S100 calcium binding protein A8 147030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15154 S100A9 S100 calcium binding protein A9 178971 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15155 S100B S100 calcium binding protein B 145509 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15156 S100G S100 calcium binding protein G 125736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15157 S100P S100 calcium binding protein P 147030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15158 S100PBP S100P binding protein 632229 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15159 S100Z S100 calcium binding protein Z 156156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15160 S1PR1 584571 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15161 S1PR2 501423 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15162 SAA2 serum amyloid A2 193167 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15163 SAA4 serum amyloid A4, constitutive 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15164 SAC3D1 SAC3 domain containing 1 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15165 SACM1L SAC1 suppressor of actin mutations 1-like (yeast) 916656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15166 SAE1 SUMO1 activating enzyme subunit 1 531843 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15167 SAG S-antigen; retina and pineal gland (arrestin) 647439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15168 SALL4 sal-like 4 (Drosophila) 1548378 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15169 SAMD10 sterile alpha motif domain containing 10 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15170 SAMD12 sterile alpha motif domain containing 12 329043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15171 SAMD13 sterile alpha motif domain containing 13 178971 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15172 SAMD14 sterile alpha motif domain containing 14 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15173 SAMD4B sterile alpha motif domain containing 4B 1079910 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15174 SAMD7 sterile alpha motif domain containing 7 694083 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15175 SAMM50 sorting and assembly machinery component 50 homolog (S. cerevisiae) 648453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15176 SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 585078 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15177 SAP18 Sin3A-associated protein, 18kDa 203814 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15178 SAP30 Sin3A-associated protein, 30kDa 198237 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15179 SAP30BP SAP30 binding protein 492297 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15180 SAP30L SAP30-like 213447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15181 SAPS2 SAPS domain family, member 2 924768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15182 SAPS3 SAPS domain family, member 3 1248234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15183 SAR1A SAR1 gene homolog A (S. cerevisiae) 314847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15184 SAR1B SAR1 gene homolog B (S. cerevisiae) 314847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15185 SARNP 343239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15186 SART1 squamous cell carcinoma antigen recognized by T cells 583557 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15187 SASH3 SAM and SH3 domain containing 3 590655 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15188 SAV1 salvador homolog 1 (Drosophila) 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15189 SBK1 SH3-binding domain kinase 1 431964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15190 SC5DL sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like 464412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15191 SC65 422838 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15192 SCAF1 SR-related CTD-associated factor 1 936936 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15193 SCAMP1 secretory carrier membrane protein 1 502437 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15194 SCAMP4 secretory carrier membrane protein 4 149058 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15195 SCAMP5 secretory carrier membrane protein 5 371124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15196 SCARA5 scavenger receptor class A, member 5 (putative) 383292 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15197 SCG2 secretogranin II (chromogranin C) 942006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15198 SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin) 146016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15199 SCGB1D1 secretoglobin, family 1D, member 1 144495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15200 SCGB1D2 secretoglobin, family 1D, member 2 144495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15201 SCGB1D4 secretoglobin, family 1D, member 4 133848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15202 SCGB2A1 secretoglobin, family 2A, member 1 152100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15203 SCGB2A2 secretoglobin, family 2A, member 2 149058 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15204 SCGB3A2 secretoglobin, family 3A, member 2 149058 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15205 SCGBL 128778 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15206 SCLY selenocysteine lyase 490269 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15207 SCMH1 sex comb on midleg homolog 1 (Drosophila) 1031745 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15208 SCML2 sex comb on midleg-like 2 (Drosophila) 1094613 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15209 SCML4 sex comb on midleg-like 4 (Drosophila) 391911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15210 SCN1B sodium channel, voltage-gated, type I, beta 371631 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15211 SCN2B sodium channel, voltage-gated, type II, beta 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15212 SCN3B sodium channel, voltage-gated, type III, beta 338676 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15213 SCN4B sodium channel, voltage-gated, type IV, beta 339690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15214 SCNN1A sodium channel, nonvoltage-gated 1 alpha 1046955 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15215 SCNN1B sodium channel, nonvoltage-gated 1, beta (Liddle syndrome) 999297 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15216 SCNN1G sodium channel, nonvoltage-gated 1, gamma 1012986 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15217 SCO1 SCO cytochrome oxidase deficient homolog 1 (yeast) 331071 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15218 SCO2 SCO cytochrome oxidase deficient homolog 2 (yeast) 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15219 SCP2 sterol carrier protein 2 841113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15220 SCRG1 154635 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15221 SCRN1 secernin 1 645918 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15222 SCRN2 secernin 2 527787 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15223 SCRN3 secernin 3 660621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15224 SCTR secretin receptor 658593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15225 SCUBE3 signal peptide, CUB domain, EGF-like 3 1511367 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15226 SDC1 syndecan 1 447681 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15227 SDC2 syndecan 2 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15228 SDC3 syndecan 3 329550 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15229 SDCBP syndecan binding protein (syntenin) 471003 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15230 SDCCAG3 serologically defined colon cancer antigen 3 488748 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15231 SDF2 stromal cell-derived factor 2 328536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15232 SDF2L1 stromal cell-derived factor 2-like 1 143988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15233 SDHAF2 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15234 SDHC succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 324987 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15235 SDHD succinate dehydrogenase complex, subunit D, integral membrane protein 251472 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15236 SDPR serum deprivation response (phosphatidylserine binding protein) 652002 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15237 SDR16C5 483678 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15238 SDR42E1 603330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15239 SDR9C7 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15240 SDS serine dehydratase 427908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15241 SDSL serine dehydratase-like 516126 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15242 SEBOX SEBOX homeobox 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15243 SEC11A SEC11 homolog A (S. cerevisiae) 258063 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15244 SEC11C SEC11 homolog C (S. cerevisiae) 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15245 SEC14L1 SEC14-like 1 (S. cerevisiae) 1105767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15246 SEC14L2 SEC14-like 2 (S. cerevisiae) 643383 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15247 SEC14L3 SEC14-like 3 (S. cerevisiae) 622089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15248 SEC14L4 SEC14-like 4 (S. cerevisiae) 593697 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15249 SEC16A SEC16 homolog A (S. cerevisiae) 2798640 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15250 SEC22B SEC22 vesicle trafficking protein homolog B (S. cerevisiae) 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15251 SEC22C SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 497874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15252 SEC23B Sec23 homolog B (S. cerevisiae) 1206660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15253 SEC23IP SEC23 interacting protein 1559025 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15254 SEC61A2 Sec61 alpha 2 subunit (S. cerevisiae) 744276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15255 SEC61B Sec61 beta subunit 103935 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15256 SEC61G Sec61 gamma subunit 111033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15257 SEC62 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15258 SECISBP2 SECIS binding protein 2 1250769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15259 SECISBP2L 1627977 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15260 SECTM1 secreted and transmembrane 1 370617 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15261 SEL1L sel-1 suppressor of lin-12-like (C. elegans) 1250769 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15262 SELENBP1 selenium binding protein 1 709293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15263 SELK 107991 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15264 SELO 396474 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15265 SELS 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15266 SELV 147030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15267 SEMA3G sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G 879645 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15268 SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 1084473 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15269 SEMA4C sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 824889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15270 SEMA4D sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D 1425684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15271 SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 919191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15272 SEMA6D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 1691859 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15273 SENP2 SUMO1/sentrin/SMT3 specific peptidase 2 931866 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15274 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 497367 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15275 SENP8 SUMO/sentrin specific peptidase family member 8 326001 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15276 SEP15 262626 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15277 SEPHS2 selenophosphate synthetase 2 535899 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15278 SEPN1 selenoprotein N, 1 626145 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15279 SEPP1 selenoprotein P, plasma, 1 589134 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15280 SEPT1 septin 1 554658 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15281 SEPT10 septin 10 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15282 SEPT11 septin 11 613977 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15283 SEPT2 septin 2 572403 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15284 SEPT3 septin 3 573417 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15285 SEPT4 septin 4 795990 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15286 SEPT6 septin 6 675831 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15287 SEPT7 septin 7 563277 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15288 SEPT8 septin 8 714870 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15289 SEPT9 septin 9 688506 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15290 SEPW1 selenoprotein W, 1 127257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15291 SERAC1 serine active site containing 1 1028703 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15292 SERBP1 SERPINE1 mRNA binding protein 1 638313 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15293 SERGEF secretion regulating guanine nucleotide exchange factor 687999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15294 SERHL2 serine hydrolase-like 2 313326 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15295 SERINC3 serine incorporator 3 698646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15296 SERINC4 serine incorporator 4 434499 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15297 SERP1 stress-associated endoplasmic reticulum protein 1 107991 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15298 SERP2 stress-associated endoplasmic reticulum protein family member 2 61854 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15299 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 653016 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15300 SERPINA7 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 640848 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15301 SERPINA9 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 673296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15302 SERPINB10 serpin peptidase inhibitor, clade B (ovalbumin), member 10 619554 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15303 SERPINB11 serpin peptidase inhibitor, clade B (ovalbumin), member 11 611949 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15304 SERPINB13 serpin peptidase inhibitor, clade B (ovalbumin), member 13 610428 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15305 SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 646932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15306 SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4 608907 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15307 SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5 584064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15308 SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 585585 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15309 SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7 593697 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15310 SERPINB8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 589134 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15311 SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 585585 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15312 SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 634257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15313 SERPINF2 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 494325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15314 SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary) 748332 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15315 SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 488748 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15316 SERTAD1 SERTA domain containing 1 186576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15317 SERTAD2 SERTA domain containing 2 481143 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15318 SERTAD4 SERTA domain containing 4 549081 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15319 SESN1 sestrin 1 859872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15320 SESN3 sestrin 3 728559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15321 SETD1A SET domain containing 1A 2358564 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15322 SETD4 SET domain containing 4 702195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15323 SETD6 SET domain containing 6 463398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15324 SETD8 SET domain containing (lysine methyltransferase) 8 482157 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15325 SETDB2 SET domain, bifurcated 2 1123512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15326 SEZ6 seizure related 6 homolog (mouse) 1116414 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15327 SF3A1 splicing factor 3a, subunit 1, 120kDa 1098669 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15328 SF3A3 splicing factor 3a, subunit 3, 60kDa 781287 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15329 SF3B14 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15330 SF3B5 splicing factor 3b, subunit 5, 10kDa 134355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15331 SFN stratifin 380757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15332 SFRP2 secreted frizzled-related protein 2 381771 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15333 SFRP5 secreted frizzled-related protein 5 370617 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15334 SFRS1 splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor) 409656 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15335 SFRS12 splicing factor, arginine/serine-rich 12 891306 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15336 SFRS13B 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15337 SFRS14 splicing factor, arginine/serine-rich 14 1665495 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15338 SFRS2B splicing factor, arginine/serine-rich 2B 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15339 SFRS3 splicing factor, arginine/serine-rich 3 261105 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15340 SFRS6 splicing factor, arginine/serine-rich 6 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15341 SFRS7 splicing factor, arginine/serine-rich 7, 35kDa 379743 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15342 SFRS8 splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila) 1342536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15343 SFT2D1 SFT2 domain containing 1 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15344 SFT2D2 SFT2 domain containing 2 227136 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15345 SFTA2 126243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15346 SFTPB surfactant, pulmonary-associated protein B 438048 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15347 SFXN1 sideroflexin 1 511563 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15348 SFXN2 sideroflexin 2 513591 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15349 SFXN3 sideroflexin 3 511563 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15350 SFXN4 sideroflexin 4 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15351 SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 478608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15352 SGCG sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15353 SGK3 serum/glucocorticoid regulated kinase family, member 3 787878 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15354 SGK494 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15355 SGMS2 sphingomyelin synthase 2 566826 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15356 SGTA small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha 163254 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15357 SGTB small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15358 SH2B2 SH2B adaptor protein 2 288483 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15359 SH2B3 SH2B adaptor protein 3 522210 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15360 SH2D1A SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome) 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15361 SH2D1B SH2 domain containing 1B 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15362 SH2D3C SH2 domain containing 3C 985101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15363 SH2D6 SH2 domain containing 6 105456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15364 SH2D7 542997 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15365 SH3BGR SH3 domain binding glutamic acid-rich protein 377208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15366 SH3BGRL2 SH3 domain binding glutamic acid-rich protein like 2 147537 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15367 SH3BGRL3 SH3 domain binding glutamic acid-rich protein like 3 122187 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15368 SH3BP5 SH3-domain binding protein 5 (BTK-associated) 639834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15369 SH3BP5L SH3-binding domain protein 5-like 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15370 SH3GL1 SH3-domain GRB2-like 1 430950 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15371 SH3GL3 SH3-domain GRB2-like 3 522717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15372 SH3GLB1 SH3-domain GRB2-like endophilin B1 536406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15373 SH3GLB2 SH3-domain GRB2-like endophilin B2 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15374 SH3KBP1 SH3-domain kinase binding protein 1 1081431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15375 SH3RF1 SH3 domain containing ring finger 1 1342536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15376 SH3RF2 SH3 domain containing ring finger 2 1128582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15377 SH3RF3 832494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15378 SHARPIN SHANK-associated RH domain interactor 498381 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15379 SHB Src homology 2 domain containing adaptor protein B 421317 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15380 SHBG sex hormone-binding globulin 629187 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15381 SHF Src homology 2 domain containing F 585585 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15382 SHFM1 split hand/foot malformation (ectrodactyly) type 1 114075 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15383 SHH sonic hedgehog homolog (Drosophila) 288990 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15384 SHISA2 shisa homolog 2 (Xenopus laevis) 282906 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15385 SHISA3 shisa homolog 3 (Xenopus laevis) 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15386 SHISA4 shisa homolog 4 (Xenopus laevis) 272259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15387 SHISA5 shisa homolog 5 (Xenopus laevis) 295074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15388 SHMT1 serine hydroxymethyltransferase 1 (soluble) 672789 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15389 SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) 792441 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15390 SHOC2 soc-2 suppressor of clear homolog (C. elegans) 902967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15391 SHOX short stature homeobox 240318 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15392 SHOX2 short stature homeobox 2 394953 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15393 SHQ1 SHQ1 homolog (S. cerevisiae) 870519 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15394 SHROOM1 shroom family member 1 559221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15395 SIAH2 seven in absentia homolog 2 (Drosophila) 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15396 SIAH3 414726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15397 SIGLEC14 sialic acid binding Ig-like lectin 14 534885 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15398 SIGLEC5 sialic acid binding Ig-like lectin 5 771147 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15399 SIGLEC6 sialic acid binding Ig-like lectin 6 715884 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15400 SIKE1 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15401 SIL1 SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae) 600288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15402 SIM2 single-minded homolog 2 (Drosophila) 599274 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15403 SIP1 survival of motor neuron protein interacting protein 1 388869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15404 SIRPD signal-regulatory protein delta 309270 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15405 SIRT1 sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) 935922 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15406 SIRT2 sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae) 533871 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15407 SIRT4 sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae) 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15408 SIRT5 sirtuin (silent mating type information regulation 2 homolog) 5 (S. cerevisiae) 512070 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15409 SIVA1 SIVA1, apoptosis-inducing factor 213954 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15410 SIX1 SIX homeobox 1 437541 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15411 SIX3 SIX homeobox 3 319410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15412 SIX4 SIX homeobox 4 1048476 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15413 SIX6 SIX homeobox 6 321438 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15414 SKA1 401544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15415 SKA2 260598 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15416 SKA3 616005 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15417 SKAP1 src kinase associated phosphoprotein 1 546546 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15418 SKAP2 src kinase associated phosphoprotein 2 571896 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15419 SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 1946373 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15420 SKP1 S-phase kinase-associated protein 1 273273 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15421 SKP2 S-phase kinase-associated protein 2 (p45) 755937 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15422 SLA Src-like-adaptor 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15423 SLA2 Src-like-adaptor 2 412698 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15424 SLAIN1 SLAIN motif family, member 1 544518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15425 SLAMF8 SLAM family member 8 445146 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15426 SLBP stem-loop binding protein 335127 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15427 SLC10A4 solute carrier family 10 (sodium/bile acid cotransporter family), member 4 371124 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15428 SLC10A5 solute carrier family 10 (sodium/bile acid cotransporter family), member 5 669747 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15429 SLC10A7 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 565812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15430 SLC12A3 solute carrier family 12 (sodium/chloride transporters), member 3 1370928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15431 SLC12A8 solute carrier family 12 (potassium/chloride transporters), member 8 1113372 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15432 SLC12A9 solute carrier family 12 (potassium/chloride transporters), member 9 1244178 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15433 SLC14A1 solute carrier family 14 (urea transporter), member 1 (Kidd blood group) 620061 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15434 SLC14A2 solute carrier family 14 (urea transporter), member 2 1439373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15435 SLC15A2 solute carrier family 15 (H+/peptide transporter), member 2 1154946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15436 SLC15A3 solute carrier family 15, member 3 616512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15437 SLC16A10 solute carrier family 16, member 10 (aromatic amino acid transporter) 630708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15438 SLC16A14 solute carrier family 16, member 14 (monocarboxylic acid transporter 14) 785343 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15439 SLC16A4 solute carrier family 16, member 4 (monocarboxylic acid transporter 5) 758472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15440 SLC16A5 solute carrier family 16, member 5 (monocarboxylic acid transporter 6) 756951 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15441 SLC16A6 solute carrier family 16, member 6 (monocarboxylic acid transporter 7) 796497 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15442 SLC16A7 solute carrier family 16, member 7 (monocarboxylic acid transporter 2) 736671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15443 SLC16A9 solute carrier family 16, member 9 (monocarboxylic acid transporter 9) 785850 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15444 SLC17A1 solute carrier family 17 (sodium phosphate), member 1 734136 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15445 SLC17A2 solute carrier family 17 (sodium phosphate), member 2 684957 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15446 SLC17A4 solute carrier family 17 (sodium phosphate), member 4 779766 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15447 SLC17A5 solute carrier family 17 (anion/sugar transporter), member 5 727038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15448 SLC17A9 457314 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15449 SLC18A2 solute carrier family 18 (vesicular monoamine), member 2 750360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15450 SLC18A3 solute carrier family 18 (vesicular acetylcholine), member 3 767091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15451 SLC19A2 solute carrier family 19 (thiamine transporter), member 2 664170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15452 SLC19A3 solute carrier family 19, member 3 766077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15453 SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 774696 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15454 SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 886236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15455 SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 852774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15456 SLC1A5 solute carrier family 1 (neutral amino acid transporter), member 5 536406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15457 SLC22A1 solute carrier family 22 (organic cation transporter), member 1 837564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15458 SLC22A12 solute carrier family 22 (organic anion/urate transporter), member 12 497367 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15459 SLC22A13 solute carrier family 22, member 13 836043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15460 SLC22A15 solute carrier family 22, member 15 811707 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15461 SLC22A17 solute carrier family 22, member 17 563784 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15462 SLC22A18 solute carrier family 22, member 18 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15463 SLC22A23 solute carrier family 22, member 23 646932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15464 SLC22A3 solute carrier family 22 (extraneuronal monoamine transporter), member 3 649974 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15465 SLC22A4 solute carrier family 22 (organic cation/ergothioneine transporter), member 4 713349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15466 SLC22A5 solute carrier family 22 (organic cation/carnitine transporter), member 5 679887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15467 SLC22A7 solute carrier family 22 (organic anion transporter), member 7 854802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15468 SLC22A8 solute carrier family 22 (organic anion transporter), member 8 846183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15469 SLC23A2 solute carrier family 23 (nucleobase transporters), member 2 1020591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15470 SLC24A5 solute carrier family 24, member 5 780273 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15471 SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15472 SLC25A10 solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 218010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15473 SLC25A11 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 466440 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15474 SLC25A12 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 1061151 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15475 SLC25A15 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 471510 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15476 SLC25A16 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 456807 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15477 SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 461877 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15478 SLC25A22 solute carrier family 25 (mitochondrial carrier: glutamate), member 22 171873 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15479 SLC25A23 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 549588 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15480 SLC25A24 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 718419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15481 SLC25A26 solute carrier family 25, member 26 276315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15482 SLC25A27 solute carrier family 25, member 27 455286 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15483 SLC25A28 solute carrier family 25, member 28 431964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15484 SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 565305 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15485 SLC25A30 solute carrier family 25, member 30 462384 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15486 SLC25A31 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 452751 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15487 SLC25A33 solute carrier family 25, member 33 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15488 SLC25A34 solute carrier family 25, member 34 223587 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15489 SLC25A36 solute carrier family 25, member 36 460356 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15490 SLC25A37 solute carrier family 25, member 37 415233 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15491 SLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15492 SLC25A42 solute carrier family 25, member 42 295581 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15493 SLC25A43 solute carrier family 25, member 43 388869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15494 SLC25A46 solute carrier family 25, member 46 508014 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15495 SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 404586 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15496 SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 364533 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15497 SLC26A10 solute carrier family 26, member 10 824889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15498 SLC26A11 solute carrier family 26, member 11 805623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15499 SLC26A2 solute carrier family 26 (sulfate transporter), member 2 1129596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15500 SLC26A8 solute carrier family 26, member 8 1515423 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15501 SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 903981 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15502 SLC27A6 solute carrier family 27 (fatty acid transporter), member 6 963300 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15503 SLC29A2 solute carrier family 29 (nucleoside transporters), member 2 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15504 SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 705744 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15505 SLC2A11 solute carrier family 2 (facilitated glucose transporter), member 11 656565 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15506 SLC2A12 solute carrier family 2 (facilitated glucose transporter), member 12 950118 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15507 SLC2A2 solute carrier family 2 (facilitated glucose transporter), member 2 820833 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15508 SLC2A7 solute carrier family 2 (facilitated glucose transporter), member 7 598260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15509 SLC30A2 solute carrier family 30 (zinc transporter), member 2 569868 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15510 SLC30A3 solute carrier family 30 (zinc transporter), member 3 591669 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15511 SLC30A6 solute carrier family 30 (zinc transporter), member 6 731094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15512 SLC30A7 solute carrier family 30 (zinc transporter), member 7 595725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15513 SLC31A2 solute carrier family 31 (copper transporters), member 2 222066 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15514 SLC33A1 solute carrier family 33 (acetyl-CoA transporter), member 1 842127 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15515 SLC34A1 solute carrier family 34 (sodium phosphate), member 1 994734 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15516 SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 510042 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15517 SLC35A5 solute carrier family 35, member A5 658593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15518 SLC35B3 solute carrier family 35, member B3 631722 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15519 SLC35D3 solute carrier family 35, member D3 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15520 SLC35E1 solute carrier family 35, member E1 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15521 SLC35E4 solute carrier family 35, member E4 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15522 SLC36A1 solute carrier family 36 (proton/amino acid symporter), member 1 745797 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15523 SLC36A2 solute carrier family 36 (proton/amino acid symporter), member 2 756444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15524 SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 711321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15525 SLC37A3 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 856830 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15526 SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4 670254 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15527 SLC38A1 solute carrier family 38, member 1 772668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15528 SLC38A11 solute carrier family 38, member 11 603837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15529 SLC38A2 solute carrier family 38, member 2 801567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15530 SLC38A3 solute carrier family 38, member 3 777231 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15531 SLC38A4 solute carrier family 38, member 4 863928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15532 SLC38A5 solute carrier family 38, member 5 682929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15533 SLC38A6 solute carrier family 38, member 6 672282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15534 SLC38A9 solute carrier family 38, member 9 883194 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15535 SLC39A10 solute carrier family 39 (zinc transporter), member 10 1283724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15536 SLC39A11 solute carrier family 39 (metal ion transporter), member 11 539955 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15537 SLC39A2 solute carrier family 39 (zinc transporter), member 2 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15538 SLC39A3 solute carrier family 39 (zinc transporter), member 3 208884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15539 SLC39A7 solute carrier family 39 (zinc transporter), member 7 729066 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15540 SLC39A8 solute carrier family 39 (zinc transporter), member 8 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15541 SLC41A3 solute carrier family 41, member 3 870012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15542 SLC43A1 solute carrier family 43, member 1 830973 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15543 SLC43A2 solute carrier family 43, member 2 338169 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15544 SLC43A3 solute carrier family 43, member 3 772668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15545 SLC44A2 solute carrier family 44, member 2 1063686 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15546 SLC44A4 solute carrier family 44, member 4 1120977 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15547 SLC45A1 solute carrier family 45, member 1 599274 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15548 SLC46A1 solute carrier family 46 (folate transporter), member 1 405600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15549 SLC46A2 solute carrier family 46, member 2 664170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15550 SLC46A3 solute carrier family 46, member 3 712842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15551 SLC47A1 solute carrier family 47, member 1 832494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15552 SLC48A1 71487 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15553 SLC4A3 solute carrier family 4, anion exchanger, member 3 1805427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15554 SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9 1344057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15555 SLC5A1 solute carrier family 5 (sodium/glucose cotransporter), member 1 1017042 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15556 SLC5A10 solute carrier family 5 (sodium/glucose cotransporter), member 10 806637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15557 SLC5A2 solute carrier family 5 (sodium/glucose cotransporter), member 2 912600 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15558 SLC5A4 solute carrier family 5 (low affinity glucose cotransporter), member 4 1033773 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15559 SLC5A7 solute carrier family 5 (choline transporter), member 7 899925 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15560 SLC5A8 solute carrier family 5 (iodide transporter), member 8 887757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15561 SLC6A11 solute carrier family 6 (neurotransmitter transporter, GABA), member 11 906516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15562 SLC6A15 solute carrier family 6, member 15 1191957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15563 SLC6A16 solute carrier family 6, member 16 1143285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15564 SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 730080 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15565 SLC6A2 solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 1012986 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15566 SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 871533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15567 SLC6A6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 972933 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15568 SLC6A8 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 642876 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15569 SLC7A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 940485 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15570 SLC7A10 solute carrier family 7, (neutral amino acid transporter, y+ system) member 10 558207 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15571 SLC7A11 solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 787878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15572 SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 1151904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15573 SLC7A5 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 208377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15574 SLC7A6 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 803088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15575 SLC7A8 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 837564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15576 SLC7A9 solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 766077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15577 SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 1501734 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15578 SLC8A2 solute carrier family 8 (sodium-calcium exchanger), member 2 805623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15579 SLC8A3 solute carrier family 8 (sodium-calcium exchanger), member 3 1481961 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15580 SLC9A1 solute carrier family 9 (sodium/hydrogen exchanger), member 1 (antiporter, Na+/H+, amiloride sensitive) 705744 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15581 SLC9A11 solute carrier family 9, member 11 1765881 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15582 SLC9A5 solute carrier family 9 (sodium/hydrogen exchanger), member 5 1233024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15583 SLC9A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 1095120 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15584 SLCO2B1 solute carrier organic anion transporter family, member 2B1 1105260 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15585 SLCO6A1 solute carrier organic anion transporter family, member 6A1 1121484 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15586 SLFN12 schlafen family member 12 886743 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15587 SLFN13 schlafen family member 13 1373970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15588 SLFNL1 schlafen-like 1 544011 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15589 SLITRK5 SLIT and NTRK-like family, member 5 1390194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15590 SLMO1 slowmo homolog 1 (Drosophila) 169338 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15591 SLN sarcolipin 50700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15592 SLPI secretory leukocyte peptidase inhibitor 210405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15593 SLU7 SLU7 splicing factor homolog (S. cerevisiae) 923247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15594 SMAD1 SMAD family member 1 720954 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15595 SMAD5 SMAD family member 5 720447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15596 SMAD7 SMAD family member 7 344760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15597 SMAGP 155142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15598 SMAP1 stromal membrane-associated GTPase-activating protein 1 672282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15599 SMAP2 stromal membrane-associated GTPase-activating protein 2 645918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15600 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 1611753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15601 SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 533871 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15602 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 719433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15603 SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 723996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15604 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 646932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15605 SMC3 structural maintenance of chromosomes 3 1901757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15606 SMCP sperm mitochondria-associated cysteine-rich protein 179985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15607 SMCR7L Smith-Magenis syndrome chromosome region, candidate 7-like 673296 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15608 SMG6 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) 2045745 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15609 SMG7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) 1758783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15610 SMNDC1 survival motor neuron domain containing 1 373659 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15611 SMOC1 SPARC related modular calcium binding 1 635271 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15612 SMOX spermine oxidase 788385 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15613 SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal 967863 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15614 SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) 371631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15615 SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) 1015521 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15616 SMPDL3A sphingomyelin phosphodiesterase, acid-like 3A 647946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15617 SMPDL3B sphingomyelin phosphodiesterase, acid-like 3B 733122 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15618 SMPX small muscle protein, X-linked 141453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15619 SMR3A submaxillary gland androgen regulated protein 3A 209391 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15620 SMR3B submaxillary gland androgen regulated protein 3B 125736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15621 SMS spermine synthase 553644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15622 SMTNL2 smoothelin-like 2 322452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15623 SMU1 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) 806130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15624 SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 416247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15625 SMURF1 SMAD specific E3 ubiquitin protein ligase 1 1119456 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15626 SMYD2 SET and MYND domain containing 2 594711 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15627 SNAI3 snail homolog 3 (Drosophila) 148551 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15628 SNAP29 synaptosomal-associated protein, 29kDa 281892 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15629 SNAP47 668226 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15630 SNAPC2 small nuclear RNA activating complex, polypeptide 2, 45kDa 408135 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15631 SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa 156663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15632 SNAPIN SNAP-associated protein 141960 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15633 SNCA synuclein, alpha (non A4 component of amyloid precursor) 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15634 SNCG synuclein, gamma (breast cancer-specific protein 1) 159198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15635 SND1 staphylococcal nuclease and tudor domain containing 1 1336452 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15636 SNHG3-RCC1 SNHG3-RCC1 518154 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15637 SNIP1 Smad nuclear interacting protein 1 570882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15638 SNN stannin 136890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15639 SNPH syntaphilin 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15640 SNRNP25 158691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15641 SNRNP27 249444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15642 SNRNP40 564798 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15643 SNRNP48 453765 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15644 SNRNP70 306228 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15645 SNRPA small nuclear ribonucleoprotein polypeptide A 442611 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15646 SNRPA1 small nuclear ribonucleoprotein polypeptide A' 364026 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15647 SNRPB2 small nuclear ribonucleoprotein polypeptide B'' 355914 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15648 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa 190632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15649 SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa 187083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15650 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 18kDa 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15651 SNRPE small nuclear ribonucleoprotein polypeptide E 151086 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15652 SNRPF small nuclear ribonucleoprotein polypeptide F 136890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15653 SNRPG small nuclear ribonucleoprotein polypeptide G 125229 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15654 SNRPN small nuclear ribonucleoprotein polypeptide N 380757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15655 SNTA1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) 557700 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15656 SNTB2 syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) 540969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15657 SNTN 233220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15658 SNUPN snurportin 1 565305 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15659 SNURF SNRPN upstream reading frame 106470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15660 SNX12 sorting nexin 12 183027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15661 SNX14 sorting nexin 14 1433796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15662 SNX15 sorting nexin 15 425373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15663 SNX17 sorting nexin 17 712842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15664 SNX18 sorting nexin 18 688506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15665 SNX19 sorting nexin 19 1532661 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15666 SNX2 sorting nexin 2 764556 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15667 SNX21 sorting nexin family member 21 445653 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15668 SNX22 sorting nexin 22 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15669 SNX24 sorting nexin 24 240318 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15670 SNX27 sorting nexin family member 27 669240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15671 SNX30 sorting nexin family member 30 603330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15672 SNX33 sorting nexin 33 878631 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15673 SNX4 sorting nexin 4 640848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15674 SNX6 sorting nexin 6 616005 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15675 SNX9 sorting nexin 9 880152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15676 SOAT2 sterol O-acyltransferase 2 716391 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15677 SOCS2 suppressor of cytokine signaling 2 234234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15678 SOCS3 suppressor of cytokine signaling 3 111033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15679 SOCS7 suppressor of cytokine signaling 7 501930 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15680 SOD2 superoxide dismutase 2, mitochondrial 294567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15681 SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 189618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15682 SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 643890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15683 SORCS2 sortilin-related VPS10 domain containing receptor 2 667719 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15684 SORD sorbitol dehydrogenase 452751 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15685 SORL1 sortilin-related receptor, L(DLR class) A repeats-containing 3319836 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15686 SOST sclerosteosis 158691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15687 SOSTDC1 sclerostin domain containing 1 318903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15688 SOX13 SRY (sex determining region Y)-box 13 863421 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15689 SOX15 SRY (sex determining region Y)-box 15 196209 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15690 SOX21 SRY (sex determining region Y)-box 21 156663 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15691 SOX3 SRY (sex determining region Y)-box 3 248430 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15692 SOX5 SRY (sex determining region Y)-box 5 1197534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15693 SOX6 SRY (sex determining region Y)-box 6 1319214 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15694 SOX7 SRY (sex determining region Y)-box 7 445653 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15695 SP140 SP140 nuclear body protein 1381068 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15696 SP140L 903981 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15697 SP2 Sp2 transcription factor 940992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15698 SP4 Sp4 transcription factor 1139736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15699 SP6 Sp6 transcription factor 237783 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15700 SPA17 sperm autoantigenic protein 17 239304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15701 SPACA4 sperm acrosome associated 4 191646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15702 SPACA5 sperm acrosome associated 5 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15703 SPACA5B sperm acrosome associated 5B 165282 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15704 SPAG1 sperm associated antigen 1 1272570 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15705 SPAG11B sperm associated antigen 11B 232206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15706 SPAG4 sperm associated antigen 4 472017 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15707 SPAG7 sperm associated antigen 7 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15708 SPAG8 sperm associated antigen 8 880659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15709 SPAM1 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) 781794 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15710 SPANXD SPANX family, member D 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15711 SPANXE SPANX family, member E 153114 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15712 SPANXN1 SPANX family, member N1 115089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15713 SPANXN2 SPANX family, member N2 279357 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15714 SPANXN3 SPANX family, member N3 220038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15715 SPARC secreted protein, acidic, cysteine-rich (osteonectin) 480636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15716 SPATA1 spermatogenesis associated 1 611442 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15717 SPATA12 spermatogenesis associated 12 292539 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15718 SPATA16 spermatogenesis associated 16 887250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15719 SPATA19 spermatogenesis associated 19 267696 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15720 SPATA21 spermatogenesis associated 21 732108 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15721 SPATA5 spermatogenesis associated 5 1392222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15722 SPATA5L1 spermatogenesis associated 5-like 1 651495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15723 SPATA7 spermatogenesis associated 7 925275 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15724 SPATA8 spermatogenesis associated 8 167310 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15725 SPATC1 spermatogenesis and centriole associated 1 590148 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15726 SPATS1 spermatogenesis associated, serine-rich 1 474045 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15727 SPATS2 spermatogenesis associated, serine-rich 2 854802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15728 SPATS2L 803088 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15729 SPC24 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) 107484 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15730 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) 354393 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15731 SPCS1 signal peptidase complex subunit 1 homolog (S. cerevisiae) 144495 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15732 SPCS2 signal peptidase complex subunit 2 homolog (S. cerevisiae) 244374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15733 SPCS3 signal peptidase complex subunit 3 homolog (S. cerevisiae) 173394 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15734 SPDEF SAM pointed domain containing ets transcription factor 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15735 SPDYA speedy homolog A (Drosophila) 495339 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15736 SPDYE1 524745 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15737 SPDYE5 528294 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15738 SPEF1 sperm flagellar 1 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15739 SPEM1 spermatid maturation 1 428922 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15740 SPESP1 sperm equatorial segment protein 1 537927 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15741 SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome) 463398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15742 SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 892827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15743 SPHAR 99372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15744 SPHK1 sphingosine kinase 1 330564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15745 SPI1 spleen focus forming virus (SFFV) proviral integration oncogene spi1 186069 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15746 SPIB Spi-B transcription factor (Spi-1/PU.1 related) 147537 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15747 SPIN3 spindlin family, member 3 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15748 SPIN4 spindlin family, member 4 382278 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15749 SPINK1 serine peptidase inhibitor, Kazal type 1 129792 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15750 SPINK13 152607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15751 SPINK14 157170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15752 SPINK4 serine peptidase inhibitor, Kazal type 4 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15753 SPINK6 serine peptidase inhibitor, Kazal type 6 131313 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15754 SPINK7 serine peptidase inhibitor, Kazal type 7 (putative) 138918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15755 SPINK8 serine peptidase inhibitor, Kazal type 8 (putative) 135369 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15756 SPINK9 serine peptidase inhibitor, Kazal type 9 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15757 SPINLW1 serine peptidase inhibitor-like, with Kunitz and WAP domains 1 (eppin) 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15758 SPINT1 serine peptidase inhibitor, Kunitz type 1 773175 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15759 SPINT2 serine peptidase inhibitor, Kunitz type, 2 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15760 SPINT4 serine peptidase inhibitor, Kunitz type 4 158184 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15761 SPNS2 spinster homolog 2 (Drosophila) 593190 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15762 SPNS3 spinster homolog 3 (Drosophila) 614991 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15763 SPOCD1 SPOC domain containing 1 826410 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15764 SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 622089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15765 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 454779 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15766 SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 633243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15767 SPON2 spondin 2, extracellular matrix protein 133341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15768 SPOPL speckle-type POZ protein-like 618033 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15769 SPR sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) 248430 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15770 SPRED3 sprouty-related, EVH1 domain containing 3 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15771 SPRR1A small proline-rich protein 1A 138918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15772 SPRR1B small proline-rich protein 1B (cornifin) 138918 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15773 SPRR2A small proline-rich protein 2A 113061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15774 SPRR2D small proline-rich protein 2D 113061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15775 SPRR2E small proline-rich protein 2E 113061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15776 SPRR2G small proline-rich protein 2G 114582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15777 SPRR3 small proline-rich protein 3 260598 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15778 SPRR4 small proline-rich protein 4 123708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15779 SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) 488748 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15780 SPRY2 sprouty homolog 2 (Drosophila) 482664 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15781 SPRY3 sprouty homolog 3 (Drosophila) 441597 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15782 SPRY4 sprouty homolog 4 (Drosophila) 495339 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15783 SPRYD3 SPRY domain containing 3 586092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15784 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 420303 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15785 SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 405093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15786 SPTLC3 serine palmitoyltransferase, long chain base subunit 3 865449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15787 SPZ1 spermatogenic leucine zipper 1 657579 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15788 SR140 1573221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15789 SRA1 steroid receptor RNA activator 1 337662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15790 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 575952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15791 SRD5A3 steroid 5 alpha-reductase 3 381264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15792 SREBF1 sterol regulatory element binding transcription factor 1 662142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15793 SRFBP1 serum response factor binding protein 1 670254 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15794 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 1453062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15795 SRI sorcin 296088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15796 SRM spermidine synthase 175929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15797 SRP19 signal recognition particle 19kDa 230685 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15798 SRP54 signal recognition particle 54kDa 798525 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15799 SRP9 signal recognition particle 9kDa 138411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15800 SRPK2 SFRS protein kinase 2 1078389 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15801 SRPK3 SFRS protein kinase 3 233727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15802 SRR serine racemase 532857 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15803 SRRD SRR1 domain containing 423345 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15804 SS18 synovial sarcoma translocation, chromosome 18 622596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15805 SS18L2 synovial sarcoma translocation gene on chromosome 18-like 2 114582 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15806 SSB Sjogren syndrome antigen B (autoantigen La) 644397 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15807 SSBP1 single-stranded DNA binding protein 1 238797 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15808 SSBP2 single-stranded DNA binding protein 2 551616 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15809 SSBP3 single stranded DNA binding protein 3 406614 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15810 SSBP4 single stranded DNA binding protein 4 203307 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15811 SSFA2 sperm specific antigen 2 1817088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15812 SSPN sarcospan (Kras oncogene-associated gene) 233727 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15813 SSR2 signal sequence receptor, beta (translocon-associated protein beta) 290004 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15814 SSR3 signal sequence receptor, gamma (translocon-associated protein gamma) 290004 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15815 SSSCA1 Sjogren syndrome/scleroderma autoantigen 1 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15816 SST somatostatin 148551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15817 SSTR1 somatostatin receptor 1 561249 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15818 SSTR4 somatostatin receptor 4 518661 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -15819 SSU72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) 209898 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15820 SSX1 synovial sarcoma, X breakpoint 1 299637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15821 ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) 587106 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15822 ST20 suppressor of tumorigenicity 20 100893 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15823 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 425373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15824 ST6GAL1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 629187 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15825 ST6GAL2 ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 692055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15826 ST6GALNAC3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 464412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15827 ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 448188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15828 ST6GALNAC6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 417768 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15829 ST7 suppression of tumorigenicity 7 974454 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15830 ST7L suppression of tumorigenicity 7 like 820326 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15831 ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 532350 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15832 ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 559728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15833 ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 497874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15834 STAC3 SH3 and cysteine rich domain 3 575952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15835 STAG3 stromal antigen 3 1924065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15836 STAG3L3 stromal antigen 3-like 3 96330 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15837 STAG3L4 stromal antigen 3-like 4 237783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15838 STAP2 signal transducing adaptor family member 2 298116 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15839 STAR steroidogenic acute regulatory protein 389376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15840 STARD10 StAR-related lipid transfer (START) domain containing 10 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15841 STARD3 StAR-related lipid transfer (START) domain containing 3 691041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15842 STARD5 StAR-related lipid transfer (START) domain containing 5 285441 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15843 STARD6 StAR-related lipid transfer (START) domain containing 6 348309 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15844 STAT5A signal transducer and activator of transcription 5A 1049490 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15845 STAT6 signal transducer and activator of transcription 6, interleukin-4 induced 1332396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15846 STATH statherin 103935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15847 STBD1 starch binding domain 1 436527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15848 STC2 stanniocalcin 2 463398 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15849 STEAP1 six transmembrane epithelial antigen of the prostate 1 525252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15850 STEAP4 STEAP family member 4 707772 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15851 STIL SCL/TAL1 interrupting locus 1993017 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15852 STIM2 stromal interaction molecule 2 1081938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15853 STK16 serine/threonine kinase 16 479622 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15854 STK24 serine/threonine kinase 24 (STE20 homolog, yeast) 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15855 STK32A serine/threonine kinase 32A 631722 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15856 STK33 serine/threonine kinase 33 807651 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15857 STK35 serine/threonine kinase 35 401037 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15858 STK36 serine/threonine kinase 36, fused homolog (Drosophila) 2054364 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15859 STK38 serine/threonine kinase 38 735150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15860 STK39 serine threonine kinase 39 (STE20/SPS1 homolog, yeast) 759486 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15861 STMN1 stathmin 1/oncoprotein 18 236262 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15862 STMN2 stathmin-like 2 283920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15863 STOML1 stomatin (EPB72)-like 1 522717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15864 STOML2 stomatin (EPB72)-like 2 563277 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15865 STOML3 stomatin (EPB72)-like 3 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15866 STON1 stonin 1 1125540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15867 STON1-GTF2A1L STON1-GTF2A1L 1819623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15868 STON2 stonin 2 1388166 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15869 STRADB 659607 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15870 STRBP spermatid perinuclear RNA binding protein 1058109 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15871 STS steroid sulfatase (microsomal), isozyme S 908544 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15872 STT3A STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) 1108302 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15873 STT3B STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) 1129089 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15874 STX11 syntaxin 11 377208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15875 STX12 syntaxin 12 303693 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15876 STX16 syntaxin 16 514098 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15877 STX18 syntaxin 18 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15878 STX19 syntaxin 19 450723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15879 STX1A syntaxin 1A (brain) 442104 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15880 STX1B syntaxin 1B 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15881 STX2 syntaxin 2 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15882 STX4 syntaxin 4 456300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15883 STX5 syntaxin 5 445653 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15884 STX8 syntaxin 8 329550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15885 STXBP3 syntaxin binding protein 3 913614 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15886 STXBP4 syntaxin binding protein 4 875082 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15887 STXBP5L syntaxin binding protein 5-like 1860183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15888 STXBP6 syntaxin binding protein 6 (amisyn) 331071 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15889 STYK1 serine/threonine/tyrosine kinase 1 661635 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15890 STYX serine/threonine/tyrosine interacting protein 332085 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15891 SUB1 SUB1 homolog (S. cerevisiae) 202800 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15892 SUCLG1 succinate-CoA ligase, alpha subunit 494832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15893 SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 636285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15894 SUCNR1 succinate receptor 1 513591 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15895 SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae) 450723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15896 SULT1A2 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 464412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15897 SULT1B1 sulfotransferase family, cytosolic, 1B, member 1 465933 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15898 SULT1C2 sulfotransferase family, cytosolic, 1C, member 2 465933 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15899 SULT1C3 sulfotransferase family, cytosolic, 1C, member 3 478101 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15900 SULT1C4 sulfotransferase family, cytosolic, 1C, member 4 475059 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15901 SULT2A1 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 447174 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15902 SULT2B1 sulfotransferase family, cytosolic, 2B, member 1 433485 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15903 SULT4A1 sulfotransferase family 4A, member 1 194181 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15904 SULT6B1 sulfotransferase family, cytosolic, 6B, member 1 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15905 SUMF1 sulfatase modifying factor 1 449709 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15906 SUMF2 sulfatase modifying factor 2 535899 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15907 SUMO2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) 141453 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15908 SUMO3 SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) 153621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15909 SUMO4 SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae) 148044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15910 SUN2 731601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15911 SUN3 564798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15912 SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 575952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15913 SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 189618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15914 SUPT7L suppressor of Ty 7 (S. cerevisiae)-like 641355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15915 SUPV3L1 suppressor of var1, 3-like 1 (S. cerevisiae) 1227447 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15916 SURF1 surfeit 1 396981 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15917 SURF2 surfeit 2 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15918 SURF4 surfeit 4 388362 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15919 SURF6 surfeit 6 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15920 SUSD1 sushi domain containing 1 1117935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15921 SUSD3 sushi domain containing 3 352365 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15922 SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 628680 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15923 SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila) 541983 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15924 SUV420H2 suppressor of variegation 4-20 homolog 2 (Drosophila) 264654 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15925 SV2C synaptic vesicle glycoprotein 2C 1131624 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15926 SVIP 97344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15927 SVOP SV2 related protein homolog (rat) 460863 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15928 SVOPL SVOP-like 570375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15929 SYBU 1017549 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15930 SYCE1 synaptonemal complex central element protein 1 433992 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15931 SYCE2 synaptonemal complex central element protein 2 345267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15932 SYCN syncollin 134355 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15933 SYCP3 synaptonemal complex protein 3 376701 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15934 SYF2 SYF2 homolog, RNA splicing factor (S. cerevisiae) 328536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15935 SYK spleen tyrosine kinase 966849 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15936 SYN2 synapsin II 639327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15937 SYNGR1 synaptogyrin 1 290511 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15938 SYNGR2 synaptogyrin 2 298116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15939 SYNGR4 synaptogyrin 4 365547 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15940 SYNJ1 synaptojanin 1 2410278 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15941 SYNJ2BP synaptojanin 2 binding protein 230178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15942 SYNPO synaptopodin 1096134 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15943 SYNPR synaptoporin 414726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15944 SYPL1 synaptophysin-like 1 341211 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15945 SYS1 SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) 160719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15946 SYT1 synaptotagmin I 659607 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15947 SYT12 synaptotagmin XII 603330 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15948 SYT13 synaptotagmin XIII 566826 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15949 SYT14 synaptotagmin XIV 853281 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15950 SYT15 synaptotagmin XV 679887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15951 SYT3 synaptotagmin III 772668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15952 SYT7 synaptotagmin VII 559728 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15953 SYT9 synaptotagmin IX 686985 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15954 SYTL1 synaptotagmin-like 1 369603 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15955 SYTL3 synaptotagmin-like 3 739206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15956 SYTL4 synaptotagmin-like 4 (granuphilin-a) 1054560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15957 SYTL5 synaptotagmin-like 5 1144299 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15958 TAAR8 trace amine associated receptor 8 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15959 TAAR9 trace amine associated receptor 9 532857 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15960 TAB1 815256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15961 TAC1 tachykinin, precursor 1 209898 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15962 TAC3 tachykinin 3 (neuromedin K, neurokinin beta) 195702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15963 TAC4 tachykinin 4 (hemokinin) 183534 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15964 TACO1 382785 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15965 TACR1 tachykinin receptor 1 632736 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -15966 TACR3 tachykinin receptor 3 715884 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15967 TADA1 511056 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15968 TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa 195195 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15969 TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa 332592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15970 TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 256542 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15971 TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 820833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15972 TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa 706251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15973 TAF1D 434499 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15974 TAF2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa 1877928 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15975 TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 798018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15976 TAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa 955188 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15977 TAF6L TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa 736164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15978 TAF7L TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa 730587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15979 TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 466440 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15980 TAF9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 662142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15981 TAGAP T-cell activation RhoGTPase activating protein 1140750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15982 TAGLN transgelin 315354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15983 TAGLN3 transgelin 3 312312 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15984 TAL1 T-cell acute lymphocytic leukemia 1 237783 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15985 TAL2 T-cell acute lymphocytic leukemia 2 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15986 TALDO1 transaldolase 1 479115 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15987 TAOK3 TAO kinase 3 1405911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15988 TAP2 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 1047969 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15989 TAPBP TAP binding protein (tapasin) 731601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15990 TARP 264147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15991 TARSL2 threonyl-tRNA synthetase-like 2 1107288 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15992 TAS2R20 taste receptor, type 2, member 20 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15993 TAS2R38 taste receptor, type 2, member 38 510042 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15994 TAS2R39 taste receptor, type 2, member 39 517647 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15995 TAS2R4 taste receptor, type 2, member 4 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15996 TAS2R40 taste receptor, type 2, member 40 494832 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15997 TAS2R41 taste receptor, type 2, member 41 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -15998 TAS2R42 taste receptor, type 2, member 42 481143 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -15999 TAS2R5 taste receptor, type 2, member 5 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16000 TAS2R50 taste receptor, type 2, member 50 458328 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16001 TAS2R60 taste receptor, type 2, member 60 487227 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16002 TAS2R7 taste receptor, type 2, member 7 487227 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16003 TAT tyrosine aminotransferase 633243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16004 TATDN2 TatD DNase domain containing 2 1171170 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16005 TATDN3 TatD DNase domain containing 3 413712 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16006 TAX1BP3 Tax1 (human T-cell leukemia virus type I) binding protein 3 49686 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16007 TAZ tafazzin (cardiomyopathy, dilated 3A (X-linked); endocardial fibroelastosis 2; Barth syndrome) 343239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16008 TBC1D10A TBC1 domain family, member 10A 640341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16009 TBC1D10B TBC1 domain family, member 10B 542997 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16010 TBC1D12 TBC1 domain family, member 12 688506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16011 TBC1D13 TBC1 domain family, member 13 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16012 TBC1D16 TBC1 domain family, member 16 375180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16013 TBC1D17 TBC1 domain family, member 17 694590 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16014 TBC1D2 TBC1 domain family, member 2 1311102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16015 TBC1D20 TBC1 domain family, member 20 593190 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16016 TBC1D24 TBC1 domain family, member 24 635271 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16017 TBC1D26 TBC1 domain family, member 26 320424 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16018 TBC1D28 TBC1 domain family, member 28 278343 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16019 TBC1D29 TBC1 domain family, member 29 227643 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16020 TBC1D7 TBC1 domain family, member 7 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16021 TBC1D9B TBC1 domain family, member 9B (with GRAM domain) 1577784 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16022 TBCA tubulin folding cofactor A 139932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16023 TBCB tubulin folding cofactor B 225615 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16024 TBCCD1 TBCC domain containing 1 860886 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16025 TBCD tubulin folding cofactor D 1332396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16026 TBK1 TANK-binding kinase 1 1150890 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16027 TBPL1 TBP-like 1 296595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16028 TBR1 T-box, brain, 1 675831 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16029 TBRG4 transforming growth factor beta regulator 4 925782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16030 TBX1 T-box 1 378729 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16031 TBX10 T-box 10 388869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16032 TBX2 T-box 2 289497 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16033 TBX21 T-box 21 528801 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16034 TCAP titin-cap (telethonin) 65403 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16035 TCEA2 transcription elongation factor A (SII), 2 368082 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16036 TCEAL1 transcription elongation factor A (SII)-like 1 219531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16037 TCEAL4 transcription elongation factor A (SII)-like 4 330564 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16038 TCEAL6 transcription elongation factor A (SII)-like 6 281892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16039 TCEAL7 transcription elongation factor A (SII)-like 7 155649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16040 TCEAL8 transcription elongation factor A (SII)-like 8 181506 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16041 TCEANC 535392 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16042 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) 177957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16043 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 177957 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16044 TCEB3C transcription elongation factor B polypeptide 3C (elongin A3) 420810 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16045 TCERG1 transcription elongation regulator 1 1684254 0 0 0 3 0 0 0 0 0 0 1.00 1.00 -16046 TCERG1L transcription elongation regulator 1-like 426894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16047 TCF23 transcription factor 23 218517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16048 TCF25 transcription factor 25 (basic helix-loop-helix) 464919 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16049 TCF3 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) 372138 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16050 TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box) 696618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16051 TCFL5 transcription factor-like 5 (basic helix-loop-helix) 444132 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16052 TCHP trichoplein, keratin filament binding 585078 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16053 TCL1A T-cell leukemia/lymphoma 1A 180999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16054 TCL1B T-cell leukemia/lymphoma 1B 189618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16055 TCN2 transcobalamin II; macrocytic anemia 669240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16056 TCP1 t-complex 1 837057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16057 TCP10 t-complex 10 homolog (mouse) 334620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16058 TCP10L t-complex 10 (mouse)-like 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16059 TCP11L1 t-complex 11 (mouse)-like 1 793962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16060 TCTA T-cell leukemia translocation altered gene 163761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16061 TCTE3 t-complex-associated-testis-expressed 3 310791 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16062 TCTEX1D1 Tctex1 domain containing 1 281892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16063 TCTEX1D2 Tctex1 domain containing 2 168324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16064 TCTN2 tectonic family member 2 1054560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16065 TCTN3 tectonic family member 3 713349 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16066 TDG thymine-DNA glycosylase 631722 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16067 TDGF1 teratocarcinoma-derived growth factor 1 299637 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16068 TDO2 tryptophan 2,3-dioxygenase 643383 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16069 TDP1 tyrosyl-DNA phosphodiesterase 1 956709 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16070 TDP2 566319 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16071 TDRD3 tudor domain containing 3 1056081 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16072 TDRD7 tudor domain containing 7 1704027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16073 TDRD9 tudor domain containing 9 1425684 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16074 TDRKH tudor and KH domain containing 879138 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16075 TECR 404079 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16076 TECTB tectorin beta 522210 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16077 TEDDM1 transmembrane epididymal protein 1 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16078 TEF thyrotrophic embryonic factor 388869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16079 TEKT1 tektin 1 651495 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16080 TEKT3 tektin 3 758472 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16081 TEKT4 tektin 4 441090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16082 TEPP 329043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16083 TERF1 telomeric repeat binding factor (NIMA-interacting) 1 578487 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16084 TERF2 telomeric repeat binding factor 2 652002 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16085 TERT telomerase reverse transcriptase 561249 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16086 TES testis derived transcript (3 LIM domains) 640341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16087 TESC tescalcin 153621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16088 TESK1 testis-specific kinase 1 898911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16089 TEX10 testis expressed 10 1445964 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16090 TEX101 testis expressed 101 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16091 TEX12 testis expressed 12 196716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16092 TEX13A testis expressed 13A 627666 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16093 TEX13B testis expressed 13B 480129 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16094 TEX19 202293 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16095 TEX261 testis expressed 261 274287 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16096 TEX264 testis expressed 264 478608 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16097 TEX9 testis expressed 9 620568 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16098 TFAM transcription factor A, mitochondrial 336648 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16099 TFAP2D transcription factor AP-2 delta (activating enhancer binding protein 2 delta) 705237 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16100 TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) 425373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16101 TFB2M transcription factor B2, mitochondrial 620061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16102 TFDP1 transcription factor Dp-1 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16103 TFDP3 transcription factor Dp family, member 3 577980 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16104 TFE3 transcription factor binding to IGHM enhancer 3 703209 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16105 TFEB transcription factor EB 560742 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16106 TFF1 trefoil factor 1 79599 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16107 TFF2 trefoil factor 2 (spasmolytic protein 1) 127764 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16108 TFF3 trefoil factor 3 (intestinal) 120666 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16109 TFG TRK-fused gene 624117 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16110 TFR2 transferrin receptor 2 1102725 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16111 TGFB1 transforming growth factor, beta 1 363519 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16112 TGFB1I1 transforming growth factor beta 1 induced transcript 1 480129 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16113 TGFB2 transforming growth factor, beta 2 690027 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16114 TGFBR2 transforming growth factor, beta receptor II (70/80kDa) 868491 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16115 TGIF1 TGFB-induced factor homeobox 1 581529 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16116 TGIF2LX TGFB-induced factor homeobox 2-like, X-linked 370110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16117 TGM2 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) 992706 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16118 TGM3 transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) 1017549 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16119 TGOLN2 trans-golgi network protein 2 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16120 THAP10 THAP domain containing 10 361491 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16121 THAP11 THAP domain containing 11 312819 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16122 THAP2 THAP domain containing, apoptosis associated protein 2 354393 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16123 THAP3 THAP domain containing, apoptosis associated protein 3 220038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16124 THAP6 THAP domain containing 6 347295 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16125 THAP8 THAP domain containing 8 221052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16126 THBS2 thrombospondin 2 1042899 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16127 THEM4 thioesterase superfamily member 4 326508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16128 THG1L tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) 466947 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16129 THOC3 THO complex 3 409656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16130 THOC6 THO complex 6 homolog (Drosophila) 504465 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16131 THOC7 THO complex 7 homolog (Drosophila) 316368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16132 THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand, megakaryocyte growth and development factor) 548574 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16133 THRA thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) 789399 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16134 THRSP thyroid hormone responsive (SPOT14 homolog, rat) 225615 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16135 THSD1 thrombospondin, type I, domain containing 1 1305525 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16136 THSD4 thrombospondin, type I, domain containing 4 1378533 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16137 THTPA thiamine triphosphatase 355407 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16138 THUMPD1 THUMP domain containing 1 427401 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16139 THUMPD3 THUMP domain containing 3 790920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16140 THY1 Thy-1 cell surface antigen 250965 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16141 THYN1 thymocyte nuclear protein 1 357942 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16142 TIAF1 TGFB1-induced anti-apoptotic factor 1 178464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16143 TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 603837 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16144 TICAM2 toll-like receptor adaptor molecule 2 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16145 TIE1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 1592994 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16146 TIFAB TRAF-interacting protein with forkhead-associated domain, family member B 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16147 TIGD3 tigger transposable element derived 3 719940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16148 TIGD4 tigger transposable element derived 4 782301 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16149 TIGD7 tigger transposable element derived 7 838578 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16150 TIMM10 translocase of inner mitochondrial membrane 10 homolog (yeast) 142467 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16151 TIMM17B translocase of inner mitochondrial membrane 17 homolog B (yeast) 212433 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16152 TIMM23 translocase of inner mitochondrial membrane 23 homolog (yeast) 103935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16153 TIMM8B translocase of inner mitochondrial membrane 8 homolog B (yeast) 111540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16154 TIMM9 translocase of inner mitochondrial membrane 9 homolog (yeast) 142974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16155 TIMP1 TIMP metallopeptidase inhibitor 1 326508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16156 TIMP2 TIMP metallopeptidase inhibitor 2 278343 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16157 TIMP3 TIMP metallopeptidase inhibitor 3 (Sorsby fundus dystrophy, pseudoinflammatory) 266682 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16158 TIMP4 TIMP metallopeptidase inhibitor 4 352365 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16159 TINAGL1 tubulointerstitial nephritis antigen-like 1 598767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16160 TINF2 TERF1 (TRF1)-interacting nuclear factor 2 707772 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16161 TIPRL TIP41, TOR signaling pathway regulator-like (S. cerevisiae) 416247 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16162 TJAP1 tight junction associated protein 1 (peripheral) 817284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16163 TJP2 tight junction protein 2 (zona occludens 2) 1597050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16164 TK1 thymidine kinase 1, soluble 267189 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16165 TLCD1 TLC domain containing 1 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16166 TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) 1084473 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16167 TLE2 transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 501930 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16168 TLK1 tousled-like kinase 1 1140243 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16169 TLL1 tolloid-like 1 1584882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16170 TLR6 toll-like receptor 6 1214265 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16171 TLR9 toll-like receptor 9 1575249 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16172 TLX1 T-cell leukemia homeobox 1 145002 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16173 TLX1NB 58305 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16174 TM2D3 TM2 domain containing 3 341211 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16175 TM4SF18 transmembrane 4 L six family member 18 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16176 TM4SF19 transmembrane 4 L six family member 19 327522 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16177 TM4SF20 transmembrane 4 L six family member 20 357942 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16178 TM4SF4 transmembrane 4 L six family member 4 318903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16179 TM4SF5 transmembrane 4 L six family member 5 307749 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16180 TM6SF1 transmembrane 6 superfamily member 1 535899 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16181 TM7SF2 transmembrane 7 superfamily member 2 480636 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16182 TM7SF3 transmembrane 7 superfamily member 3 844662 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16183 TM7SF4 transmembrane 7 superfamily member 4 722475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16184 TM9SF3 transmembrane 9 superfamily member 3 874068 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16185 TM9SF4 transmembrane 9 superfamily protein member 4 1004874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16186 TMBIM1 transmembrane BAX inhibitor motif containing 1 392418 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16187 TMBIM6 469482 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16188 TMC1 transmembrane channel-like 1 1198041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16189 TMCO1 transmembrane and coiled-coil domains 1 301665 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16190 TMCO2 transmembrane and coiled-coil domains 2 282399 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16191 TMCO3 transmembrane and coiled-coil domains 3 1001325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16192 TMCO4 transmembrane and coiled-coil domains 4 894348 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16193 TMCO5A 459849 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16194 TMED1 transmembrane emp24 protein transport domain containing 1 260091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16195 TMED2 transmembrane emp24 domain trafficking protein 2 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16196 TMED3 transmembrane emp24 protein transport domain containing 3 250458 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16197 TMED4 transmembrane emp24 protein transport domain containing 4 269217 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16198 TMED5 transmembrane emp24 protein transport domain containing 5 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16199 TMED6 transmembrane emp24 protein transport domain containing 6 374673 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16200 TMED7-TICAM2 539448 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16201 TMED8 transmembrane emp24 protein transport domain containing 8 446160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16202 TMED9 transmembrane emp24 protein transport domain containing 9 220545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16203 TMEFF1 transmembrane protein with EGF-like and two follistatin-like domains 1 498381 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16204 TMEM100 transmembrane protein 100 207363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16205 TMEM102 transmembrane protein 102 462384 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16206 TMEM105 transmembrane protein 105 171366 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16207 TMEM106C transmembrane protein 106C 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16208 TMEM107 transmembrane protein 107 233220 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16209 TMEM109 transmembrane protein 109 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16210 TMEM11 transmembrane protein 11 263133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16211 TMEM111 transmembrane protein 111 414726 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16212 TMEM115 transmembrane protein 115 350337 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16213 TMEM116 transmembrane protein 116 388362 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16214 TMEM117 transmembrane protein 117 797511 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16215 TMEM123 transmembrane protein 123 275301 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16216 TMEM126A transmembrane protein 126A 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16217 TMEM126B transmembrane protein 126B 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16218 TMEM127 transmembrane protein 127 243867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16219 TMEM128 transmembrane protein 128 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16220 TMEM130 transmembrane protein 130 634257 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16221 TMEM132E transmembrane protein 132E 1093092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16222 TMEM133 transmembrane protein 133 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16223 TMEM134 transmembrane protein 134 88218 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16224 TMEM135 transmembrane protein 135 722475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16225 TMEM136 transmembrane protein 136 232713 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16226 TMEM138 transmembrane protein 138 256035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16227 TMEM139 transmembrane protein 139 334113 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16228 TMEM140 transmembrane protein 140 284934 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16229 TMEM141 transmembrane protein 141 89739 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16230 TMEM143 transmembrane protein 143 617526 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16231 TMEM144 transmembrane protein 144 548574 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16232 TMEM145 transmembrane protein 145 675831 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16233 TMEM147 transmembrane protein 147 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16234 TMEM149 transmembrane protein 149 467961 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16235 TMEM14A transmembrane protein 14A 160212 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16236 TMEM14B transmembrane protein 14B 185055 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16237 TMEM14C transmembrane protein 14C 182013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16238 TMEM14E 193674 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16239 TMEM150C 389883 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16240 TMEM154 transmembrane protein 154 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16241 TMEM156 transmembrane protein 156 463398 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16242 TMEM159 transmembrane protein 159 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16243 TMEM163 transmembrane protein 163 352872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16244 TMEM164 transmembrane protein 164 465426 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16245 TMEM165 transmembrane protein 165 399009 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16246 TMEM168 transmembrane protein 168 1069770 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16247 TMEM17 transmembrane protein 17 258570 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16248 TMEM170B 157170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16249 TMEM171 transmembrane protein 171 500409 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16250 TMEM175 transmembrane protein 175 261612 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16251 TMEM176A transmembrane protein 176A 327015 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16252 TMEM176B transmembrane protein 176B 424359 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16253 TMEM177 transmembrane protein 177 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16254 TMEM179 transmembrane protein 179 78585 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16255 TMEM179B transmembrane protein 179B 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16256 TMEM180 transmembrane protein 180 804102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16257 TMEM181 transmembrane protein 181 694083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16258 TMEM183A transmembrane protein 183A 532350 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16259 TMEM184A transmembrane protein 184A 168324 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16260 TMEM184B transmembrane protein 184B 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16261 TMEM184C 687999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16262 TMEM185A transmembrane protein 185A 399516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16263 TMEM186 transmembrane protein 186 329550 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16264 TMEM187 transmembrane protein 187 373152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16265 TMEM188 transmembrane protein 188 150579 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16266 TMEM189-UBE2V1 TMEM189-UBE2V1 517140 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16267 TMEM19 transmembrane protein 19 524745 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16268 TMEM190 transmembrane protein 190 132834 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16269 TMEM192 transmembrane protein 192 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16270 TMEM194A 632736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16271 TMEM196 transmembrane protein 196 163761 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16272 TMEM198 transmembrane protein 198 384813 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16273 TMEM199 transmembrane protein 199 238797 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16274 TMEM2 transmembrane protein 2 2151708 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16275 TMEM20 transmembrane protein 20 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16276 TMEM200A transmembrane protein 200A 750360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16277 TMEM202 transmembrane protein 202 426894 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16278 TMEM204 transmembrane protein 204 143988 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16279 TMEM205 transmembrane protein 205 295074 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16280 TMEM206 transmembrane protein 206 550095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16281 TMEM208 transmembrane protein 208 262119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16282 TMEM209 transmembrane protein 209 855309 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16283 TMEM211 201786 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16284 TMEM215 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16285 TMEM216 163761 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16286 TMEM217 355914 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16287 TMEM218 124722 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16288 TMEM219 374673 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16289 TMEM22 transmembrane protein 22 630201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16290 TMEM220 218517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16291 TMEM222 229671 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16292 TMEM225 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16293 TMEM229B 251979 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16294 TMEM231 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16295 TMEM25 transmembrane protein 25 525252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16296 TMEM26 transmembrane protein 26 573417 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16297 TMEM30A transmembrane protein 30A 564798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16298 TMEM31 transmembrane protein 31 261105 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16299 TMEM33 transmembrane protein 33 366561 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16300 TMEM35 transmembrane protein 35 259584 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16301 TMEM37 transmembrane protein 37 281892 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16302 TMEM39A transmembrane protein 39A 759993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16303 TMEM39B transmembrane protein 39B 584064 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16304 TMEM40 transmembrane protein 40 378222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16305 TMEM41A transmembrane protein 41A 270738 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16306 TMEM41B transmembrane protein 41B 403065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16307 TMEM42 transmembrane protein 42 150072 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16308 TMEM43 transmembrane protein 43 626145 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16309 TMEM45A transmembrane protein 45A 429936 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16310 TMEM45B transmembrane protein 45B 410163 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16311 TMEM49 transmembrane protein 49 641355 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16312 TMEM5 transmembrane protein 5 656565 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16313 TMEM53 transmembrane protein 53 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16314 TMEM54 transmembrane protein 54 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16315 TMEM55A transmembrane protein 55A 377208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16316 TMEM55B transmembrane protein 55B 363012 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16317 TMEM56 transmembrane protein 56 413712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16318 TMEM59 transmembrane protein 59 509028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16319 TMEM60 transmembrane protein 60 205842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16320 TMEM61 transmembrane protein 61 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16321 TMEM62 transmembrane protein 62 914628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16322 TMEM63A transmembrane protein 63A 1128075 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16323 TMEM65 transmembrane protein 65 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16324 TMEM68 transmembrane protein 68 400530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16325 TMEM69 transmembrane protein 69 381264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16326 TMEM70 transmembrane protein 70 298623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16327 TMEM79 transmembrane protein 79 606372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16328 TMEM80 transmembrane protein 80 173901 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16329 TMEM81 transmembrane protein 81 391404 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16330 TMEM85 transmembrane protein 85 244374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16331 TMEM86A transmembrane protein 86A 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16332 TMEM86B transmembrane protein 86B 122694 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16333 TMEM8C 347802 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16334 TMEM91 transmembrane protein 91 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16335 TMEM92 transmembrane protein 92 252993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16336 TMEM93 transmembrane protein 93 81627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16337 TMEM95 transmembrane protein 95 288990 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16338 TMEM97 transmembrane protein 97 209391 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16339 TMEM98 transmembrane protein 98 288990 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16340 TMEM99 transmembrane protein 99 395967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16341 TMF1 TATA element modulatory factor 1 1698450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16342 TMIE transmembrane inner ear 197730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16343 TMIGD1 transmembrane and immunoglobulin domain containing 1 412191 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16344 TMLHE trimethyllysine hydroxylase, epsilon 583557 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16345 TMOD2 tropomodulin 2 (neuronal) 553644 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16346 TMOD3 tropomodulin 3 (ubiquitous) 555165 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16347 TMOD4 tropomodulin 4 (muscle) 544518 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16348 TMPO thymopoietin 1339494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16349 TMPPE 692562 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16350 TMPRSS11D transmembrane protease, serine 11D 657579 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16351 TMPRSS11E transmembrane protease, serine 11E 490776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16352 TMPRSS12 transmembrane protease, serine 12 475566 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16353 TMPRSS15 1572714 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16354 TMPRSS2 transmembrane protease, serine 2 460863 0 0 0 4 0 0 0 0 0 0 1.00 1.00 -16355 TMPRSS3 transmembrane protease, serine 3 692562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16356 TMPRSS4 transmembrane protease, serine 4 689013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16357 TMPRSS5 transmembrane protease, serine 5 (spinesin) 525252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16358 TMPRSS7 transmembrane protease, serine 7 937950 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16359 TMPRSS9 transmembrane protease, serine 9 451230 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16360 TMSB10 thymosin beta 10 63882 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16361 TMSB15B 74022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16362 TMSB4X thymosin beta 4, X-linked 72501 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16363 TMSL3 thymosin-like 3 142974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16364 TMUB1 transmembrane and ubiquitin-like domain containing 1 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16365 TMX1 435006 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16366 TMX2 457821 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16367 TMX3 669240 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16368 TNF tumor necrosis factor (TNF superfamily, member 2) 364026 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16369 TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) 486720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16370 TNFAIP2 tumor necrosis factor, alpha-induced protein 2 518661 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16371 TNFAIP8 tumor necrosis factor, alpha-induced protein 8 293046 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16372 TNFAIP8L1 tumor necrosis factor, alpha-induced protein 8-like 1 79092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16373 TNFAIP8L3 tumor necrosis factor, alpha-induced protein 8-like 3 376701 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16374 TNFRSF10A tumor necrosis factor receptor superfamily, member 10a 576459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16375 TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 575952 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16376 TNFRSF10C tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain 373152 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16377 TNFRSF12A tumor necrosis factor receptor superfamily, member 12A 58305 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16378 TNFRSF13B tumor necrosis factor receptor superfamily, member 13B 408135 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16379 TNFRSF14 tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator) 247923 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16380 TNFRSF17 tumor necrosis factor receptor superfamily, member 17 287469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16381 TNFRSF19 tumor necrosis factor receptor superfamily, member 19 658593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16382 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B 622596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16383 TNFRSF25 tumor necrosis factor receptor superfamily, member 25 313833 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16384 TNFRSF9 tumor necrosis factor receptor superfamily, member 9 403572 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16385 TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 439062 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16386 TNFSF11 tumor necrosis factor (ligand) superfamily, member 11 380757 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16387 TNFSF12 tumor necrosis factor (ligand) superfamily, member 12 285441 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16388 TNFSF12-TNFSF13 TNFSF12-TNFSF13 416754 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16389 TNFSF13 tumor necrosis factor (ligand) superfamily, member 13 358449 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16390 TNFSF14 tumor necrosis factor (ligand) superfamily, member 14 340704 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16391 TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 391404 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16392 TNFSF8 tumor necrosis factor (ligand) superfamily, member 8 365547 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16393 TNIP1 TNFAIP3 interacting protein 1 970905 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16394 TNIP3 TNFAIP3 interacting protein 3 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16395 TNK1 tyrosine kinase, non-receptor, 1 409149 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16396 TNK2 tyrosine kinase, non-receptor, 2 771654 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16397 TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 1915446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16398 TNMD tenomodulin 497874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16399 TNNC1 troponin C type 1 (slow) 232206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16400 TNNI1 troponin I type 1 (skeletal, slow) 295581 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16401 TNNI3K TNNI3 interacting kinase 1458639 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16402 TNNT1 troponin T type 1 (skeletal, slow) 295581 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16403 TNNT2 troponin T type 2 (cardiac) 477594 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16404 TNP1 transition protein 1 (during histone to protamine replacement) 89232 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16405 TNP2 transition protein 2 (during histone to protamine replacement) 215475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16406 TNPO3 transportin 3 1450020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16407 TNS4 tensin 4 1111851 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16408 TOB2 transducer of ERBB2, 2 405093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16409 TOE1 target of EGR1, member 1 (nuclear) 770133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16410 TOM1 target of myb1 (chicken) 712842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16411 TOM1L1 target of myb1 (chicken)-like 1 755937 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16412 TOM1L2 target of myb1-like 2 (chicken) 682422 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16413 TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) 232206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16414 TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) 427908 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16415 TOMM5 133341 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16416 TOMM7 translocase of outer mitochondrial membrane 7 homolog (yeast) 91260 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16417 TOMM70A translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) 784329 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16418 TOP1MT topoisomerase (DNA) I, mitochondrial 766077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16419 TOP2B topoisomerase (DNA) II beta 180kDa 2304315 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16420 TOP3B topoisomerase (DNA) III beta 899418 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16421 TOR1B torsin family 1, member B (torsin B) 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16422 TOR2A torsin family 2, member A 195702 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16423 TP53AIP1 167817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16424 TP53I11 tumor protein p53 inducible protein 11 254007 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16425 TP53I13 tumor protein p53 inducible protein 13 189618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16426 TP53INP1 tumor protein p53 inducible nuclear protein 1 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16427 TP53INP2 tumor protein p53 inducible nuclear protein 2 152100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16428 TP53RK TP53 regulating kinase 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16429 TP53TG5 452751 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16430 TP63 tumor protein p63 1147848 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16431 TPBG trophoblast glycoprotein 460863 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16432 TPD52L2 tumor protein D52-like 2 297609 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16433 TPD52L3 tumor protein D52-like 3 259077 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16434 TPH1 tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16435 TPH2 tryptophan hydroxylase 2 769119 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16436 TPI1 triosephosphate isomerase 1 384813 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16437 TPM4 tropomyosin 4 445653 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16438 TPMT thiopurine S-methyltransferase 390390 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16439 TPP2 tripeptidyl peptidase II 1878942 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16440 TPPP3 tubulin polymerization-promoting protein family member 3 275301 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16441 TPRA1 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16442 TPRG1L tumor protein p63 regulated 1-like 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16443 TPRKB TP53RK binding protein 275808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16444 TPT1 tumor protein, translationally-controlled 1 219531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16445 TPTE transmembrane phosphatase with tensin homology 882180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16446 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis) 1170156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16447 TRA2A 439062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16448 TRABD TraB domain containing 168831 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16449 TRAF1 TNF receptor-associated factor 1 647946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16450 TRAF2 TNF receptor-associated factor 2 678366 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16451 TRAF3 TNF receptor-associated factor 3 882687 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16452 TRAF3IP2 TRAF3 interacting protein 2 877110 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16453 TRAF4 TNF receptor-associated factor 4 461370 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16454 TRAF5 TNF receptor-associated factor 5 868998 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16455 TRAIP TRAF interacting protein 738699 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16456 TRAM1 translocation associated membrane protein 1 585078 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16457 TRAM1L1 translocation associated membrane protein 1-like 1 532350 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16458 TRAM2 translocation associated membrane protein 2 523731 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16459 TRAPPC2L trafficking protein particle complex 2-like 178971 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16460 TRAPPC3 trafficking protein particle complex 3 285441 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16461 TRAPPC4 trafficking protein particle complex 4 344760 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16462 TRAPPC6A trafficking protein particle complex 6A 226122 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16463 TRAPPC6B trafficking protein particle complex 6B 254007 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16464 TRAT1 T cell receptor associated transmembrane adaptor 1 296595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16465 TREML4 triggering receptor expressed on myeloid cells-like 4 315861 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16466 TREX1 three prime repair exonuclease 1 564798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16467 TRH thyrotropin-releasing hormone 373659 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16468 TRHR thyrotropin-releasing hormone receptor 610935 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16469 TRIAP1 TP53 regulated inhibitor of apoptosis 1 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16470 TRIB1 tribbles homolog 1 (Drosophila) 388869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16471 TRIB2 tribbles homolog 2 (Drosophila) 529308 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16472 TRIM15 tripartite motif-containing 15 556179 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16473 TRIM16 tripartite motif-containing 16 864435 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16474 TRIM16L tripartite motif-containing 16-like 538941 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16475 TRIM2 tripartite motif-containing 2 1091571 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16476 TRIM22 tripartite motif-containing 22 773175 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16477 TRIM25 tripartite motif-containing 25 784329 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16478 TRIM27 tripartite motif-containing 27 583050 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16479 TRIM3 tripartite motif-containing 3 1154946 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16480 TRIM31 tripartite motif-containing 31 664170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16481 TRIM33 tripartite motif-containing 33 1487538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16482 TRIM34 tripartite motif-containing 34 778245 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16483 TRIM35 tripartite motif-containing 35 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16484 TRIM36 tripartite motif-containing 36 1256346 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16485 TRIM39 tripartite motif-containing 39 803595 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16486 TRIM4 tripartite motif-containing 4 574938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16487 TRIM40 tripartite motif-containing 40 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16488 TRIM43 tripartite motif-containing 43 470496 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16489 TRIM44 tripartite motif-containing 44 534885 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16490 TRIM47 tripartite motif-containing 47 566826 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16491 TRIM52 tripartite motif-containing 52 457314 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16492 TRIM54 tripartite motif-containing 54 484185 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16493 TRIM58 tripartite motif-containing 58 462891 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16494 TRIM59 tripartite motif-containing 59 616512 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16495 TRIM61 tripartite motif-containing 61 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16496 TRIM62 tripartite motif-containing 62 523224 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16497 TRIM69 tripartite motif-containing 69 725517 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16498 TRIM7 tripartite motif-containing 7 490269 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16499 TRIM71 tripartite motif-containing 71 978003 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16500 TRIM73 tripartite motif-containing 73 216996 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16501 TRIM74 tripartite motif-containing 74 339183 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16502 TRIML1 tripartite motif family-like 1 682422 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16503 TRIML2 tripartite motif family-like 2 604344 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16504 TRIP4 thyroid hormone receptor interactor 4 858351 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16505 TRIT1 tRNA isopentenyltransferase 1 717912 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16506 TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae) 693576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16507 TRMT112 199758 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16508 TRMT12 tRNA methyltransferase 12 homolog (S. cerevisiae) 684957 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16509 TRMT61A 279864 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16510 TRMU tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 500916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16511 TRNAU1AP 440583 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16512 TRPM1 transient receptor potential cation channel, subfamily M, member 1 2492412 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16513 TRPT1 tRNA phosphotransferase 1 282399 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16514 TRPV1 transient receptor potential cation channel, subfamily V, member 1 839592 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16515 TRPV3 transient receptor potential cation channel, subfamily V, member 3 1103232 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16516 TRPV5 transient receptor potential cation channel, subfamily V, member 5 1140750 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16517 TRUB2 TruB pseudouridine (psi) synthase homolog 2 (E. coli) 514098 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16518 TSC22D4 TSC22 domain family, member 4 484692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16519 TSFM Ts translation elongation factor, mitochondrial 477087 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16520 TSGA10 testis specific, 10 1095627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16521 TSGA10IP testis specific, 10 interacting protein 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16522 TSGA14 testis specific, 14 591162 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16523 TSHB thyroid stimulating hormone, beta 215475 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16524 TSHZ1 teashirt zinc finger homeobox 1 1481454 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16525 TSHZ3 teashirt zinc finger homeobox 3 1627470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16526 TSN translin 360477 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16527 TSNAX translin-associated factor X 454779 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16528 TSNAXIP1 translin-associated factor X interacting protein 1 971412 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16529 TSPAN10 tetraspanin 10 276822 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16530 TSPAN14 tetraspanin 14 418275 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16531 TSPAN15 tetraspanin 15 406107 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16532 TSPAN16 tetraspanin 16 360477 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16533 TSPAN18 tetraspanin 18 392925 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16534 TSPAN19 tetraspanin 19 394953 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16535 TSPAN2 tetraspanin 2 265161 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16536 TSPAN3 tetraspanin 3 366561 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16537 TSPAN31 tetraspanin 31 305721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16538 TSPAN32 tetraspanin 32 180492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16539 TSPAN5 tetraspanin 5 425373 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16540 TSPAN6 tetraspanin 6 388362 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16541 TSPAN7 tetraspanin 7 389883 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16542 TSPAN8 tetraspanin 8 378222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16543 TSPAN9 tetraspanin 9 310284 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16544 TSPYL4 TSPY-like 4 446667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16545 TSPYL5 TSPY-like 5 471510 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16546 TSPYL6 TSPY-like 6 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16547 TSSK4 testis-specific serine kinase 4 523731 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16548 TSSK6 testis-specific serine kinase 6 246402 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16549 TST thiosulfate sulfurtransferase (rhodanese) 197223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16550 TSTA3 tissue specific transplantation antigen P35B 338676 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16551 TSTD2 804609 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16552 TTC1 tetratricopeptide repeat domain 1 459849 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16553 TTC12 tetratricopeptide repeat domain 12 1116414 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16554 TTC13 tetratricopeptide repeat domain 13 1216800 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16555 TTC17 tetratricopeptide repeat domain 17 1703013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16556 TTC21A tetratricopeptide repeat domain 21A 2069574 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16557 TTC23L 568854 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16558 TTC25 tetratricopeptide repeat domain 25 838071 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16559 TTC27 tetratricopeptide repeat domain 27 1213251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16560 TTC30A tetratricopeptide repeat domain 30A 896376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16561 TTC30B tetratricopeptide repeat domain 30B 912093 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16562 TTC33 tetratricopeptide repeat domain 33 408135 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16563 TTC36 159705 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16564 TTC39C 829959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16565 TTC8 tetratricopeptide repeat domain 8 755430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16566 TTC9 tetratricopeptide repeat domain 9 137397 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16567 TTC9B tetratricopeptide repeat domain 9B 128778 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16568 TTF1 transcription termination factor, RNA polymerase I 1398306 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16569 TTLL11 tubulin tyrosine ligase-like family, member 11 454779 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16570 TTLL2 tubulin tyrosine ligase-like family, member 2 882180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16571 TTLL9 tubulin tyrosine ligase-like family, member 9 697125 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16572 TTPAL 529815 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16573 TTR transthyretin (prealbumin, amyloidosis type I) 88218 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16574 TTYH3 tweety homolog 3 (Drosophila) 209391 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16575 TUBA1A tubulin, alpha 1a 695604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16576 TUBA1C tubulin, alpha 1c 689013 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16577 TUBA3E tubulin, alpha 3e 696111 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16578 TUBA4A tubulin, alpha 4a 687492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16579 TUBA8 tubulin, alpha 8 691041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16580 TUBB1 tubulin, beta 1 695604 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16581 TUBB2A tubulin, beta 2A 492297 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16582 TUBB3 tubulin, beta 3 624117 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16583 TUBB4Q tubulin, beta polypeptide 4, member Q 306735 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16584 TUBB6 tubulin, beta 6 628173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16585 TUBB8 629694 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16586 TUBE1 tubulin, epsilon 1 694083 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16587 TUBG1 tubulin, gamma 1 682929 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16588 TUBG2 tubulin, gamma 2 679887 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16589 TUBGCP3 tubulin, gamma complex associated protein 3 1366872 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16590 TUBGCP4 tubulin, gamma complex associated protein 4 1042899 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16591 TUBGCP6 tubulin, gamma complex associated protein 6 1912911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16592 TUFT1 tuftelin 1 545025 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16593 TULP2 tubby like protein 2 816777 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16594 TUSC2 tumor suppressor candidate 2 89739 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16595 TUSC3 tumor suppressor candidate 3 489255 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16596 TUSC5 tumor suppressor candidate 5 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16597 TWF1 twinfilin, actin-binding protein, homolog 1 (Drosophila) 537420 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16598 TXLNA taxilin alpha 592176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16599 TXLNB taxilin beta 1060137 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16600 TXLNG 771147 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16601 TXN2 thioredoxin 2 260091 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16602 TXNDC16 thioredoxin domain containing 16 1294878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16603 TXNDC17 thioredoxin domain containing 17 79599 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16604 TXNDC2 thioredoxin domain-containing 2 (spermatozoa) 846690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16605 TXNDC3 thioredoxin domain containing 3 (spermatozoa) 926289 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16606 TXNDC5 thioredoxin domain containing 5 542490 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16607 TXNDC6 thioredoxin domain containing 6 419796 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16608 TXNDC9 thioredoxin domain containing 9 353379 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16609 TXNIP thioredoxin interacting protein 612456 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16610 TXNL1 thioredoxin-like 1 433485 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16611 TXNL4B thioredoxin-like 4B 234234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16612 TXNRD1 thioredoxin reductase 1 931359 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16613 TXNRD2 thioredoxin reductase 2 498888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16614 TXNRD3IT1 207870 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16615 TYMS thymidylate synthetase 385827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16616 TYRO3 TYRO3 protein tyrosine kinase 1274091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16617 TYROBP TYRO protein tyrosine kinase binding protein 140439 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16618 TYSND1 trypsin domain containing 1 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16619 U2AF1 U2 small nuclear RNA auxiliary factor 1 394446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16620 U2AF1L4 U2 small nuclear RNA auxiliary factor 1-like 4 346281 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16621 U2AF2 U2 small nuclear RNA auxiliary factor 2 501423 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16622 UAP1 UDP-N-acteylglucosamine pyrophosphorylase 1 787878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16623 UAP1L1 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 272259 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16624 UBA2 ubiquitin-like modifier activating enzyme 2 933387 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16625 UBA5 ubiquitin-like modifier activating enzyme 5 556686 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16626 UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 204321 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16627 UBAC1 UBA domain containing 1 509028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16628 UBAC2 UBA domain containing 2 606372 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16629 UBAP2 ubiquitin associated protein 2 1760304 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16630 UBASH3B ubiquitin associated and SH3 domain containing, B 933387 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16631 UBB ubiquitin B 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16632 UBD ubiquitin D 256542 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16633 UBE2B ubiquitin-conjugating enzyme E2B (RAD6 homolog) 177450 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16634 UBE2C ubiquitin-conjugating enzyme E2C 309270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16635 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16636 UBE2D3 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 283413 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16637 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16638 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 305214 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16639 UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 317382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16640 UBE2E3 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) 326508 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16641 UBE2F ubiquitin-conjugating enzyme E2F (putative) 301158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16642 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 244881 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16643 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 168831 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16644 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16645 UBE2I ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) 224601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16646 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 283920 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16647 UBE2L3 ubiquitin-conjugating enzyme E2L 3 228150 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16648 UBE2L6 ubiquitin-conjugating enzyme E2L 6 226629 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16649 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 192660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16650 UBE2N ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) 223587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16651 UBE2NL ubiquitin-conjugating enzyme E2N-like 236262 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16652 UBE2S ubiquitin-conjugating enzyme E2S 269217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16653 UBE2T ubiquitin-conjugating enzyme E2T (putative) 313326 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16654 UBE2U ubiquitin-conjugating enzyme E2U (putative) 363519 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16655 UBE2V2 ubiquitin-conjugating enzyme E2 variant 2 220038 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16656 UBE2W ubiquitin-conjugating enzyme E2W (putative) 252486 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16657 UBFD1 ubiquitin family domain containing 1 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16658 UBL3 ubiquitin-like 3 189618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16659 UBL4A ubiquitin-like 4A 166296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16660 UBL5 ubiquitin-like 5 120666 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16661 UBL7 ubiquitin-like 7 (bone marrow stromal cell-derived) 555672 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16662 UBQLN2 ubiquilin 2 821847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16663 UBQLN3 ubiquilin 3 999804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16664 UBQLNL ubiquilin-like 726024 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16665 UBTD1 ubiquitin domain containing 1 315354 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16666 UBTD2 ubiquitin domain containing 2 326001 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16667 UBTF upstream binding transcription factor, RNA polymerase I 1165593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16668 UBXN1 449202 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16669 UBXN10 429429 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16670 UBXN2A 407628 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16671 UBXN2B 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16672 UBXN6 299130 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16673 UBXN7 728559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16674 UBXN8 325494 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16675 UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 268203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16676 UCK1 uridine-cytidine kinase 1 365040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16677 UCMA 221559 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16678 UCN urocortin 57798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16679 UCN3 urocortin 3 (stresscopin) 248430 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16680 UCP1 uncoupling protein 1 (mitochondrial, proton carrier) 414726 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16681 UFM1 ubiquitin-fold modifier 1 142974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16682 UFSP1 UFM1-specific peptidase 1 (non-functional) 200265 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16683 UFSP2 UFM1-specific peptidase 2 735657 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16684 UGCG UDP-glucose ceramide glucosyltransferase 567333 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16685 UGDH UDP-glucose dehydrogenase 775203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16686 UGP2 UDP-glucose pyrophosphorylase 2 794469 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16687 UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1 822354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16688 UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 823875 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16689 UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 823875 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16690 UGT1A5 UDP glucuronosyltransferase 1 family, polypeptide A5 823875 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16691 UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7 817791 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16692 UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 817791 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16693 UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9 817791 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16694 UGT2A3 UDP glucuronosyltransferase 2 family, polypeptide A3 815256 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16695 UGT2B11 UDP glucuronosyltransferase 2 family, polypeptide B11 818298 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16696 UGT2B17 UDP glucuronosyltransferase 2 family, polypeptide B17 750867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16697 UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7 818298 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16698 UGT3A2 UDP glycosyltransferase 3 family, polypeptide A2 811200 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16699 UHMK1 U2AF homology motif (UHM) kinase 1 580515 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16700 UHRF2 ubiquitin-like, containing PHD and RING finger domains, 2 1199562 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16701 UIMC1 ubiquitin interaction motif containing 1 1123512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16702 ULBP1 UL16 binding protein 1 376194 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16703 ULBP2 UL16 binding protein 2 377208 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16704 ULK2 unc-51-like kinase 2 (C. elegans) 1533675 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16705 ULK3 unc-51-like kinase 3 (C. elegans) 380250 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16706 ULK4 unc-51-like kinase 4 (C. elegans) 2013804 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16707 UNC119 unc-119 homolog (C. elegans) 286455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16708 UNC119B unc-119 homolog B (C. elegans) 267696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16709 UNC13D unc-13 homolog D (C. elegans) 764049 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16710 UNC45B unc-45 homolog B (C. elegans) 1359267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16711 UNC50 unc-50 homolog (C. elegans) 405600 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16712 UNC5A unc-5 homolog A (C. elegans) 728052 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16713 UNC93B1 unc-93 homolog B1 (C. elegans) 290511 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16714 UNG uracil-DNA glycosylase 476073 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16715 UNK unkempt homolog (Drosophila) 757965 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16716 UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) 582543 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16717 UPK1A uroplakin 1A 314847 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16718 UPK1B uroplakin 1B 411177 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16719 UPK2 uroplakin 2 291525 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16720 UPP2 uridine phosphorylase 2 542997 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16721 UQCC ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast) 476580 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16722 UQCR10 118131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16723 UQCR11 63375 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16724 UQCRB ubiquinol-cytochrome c reductase binding protein 178464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16725 UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 311805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16726 UQCRH ubiquinol-cytochrome c reductase hinge protein 148044 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16727 UQCRHL 141960 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16728 UQCRQ ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa 128271 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16729 URB2 2337777 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16730 URGCP 1404897 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16731 URM1 ubiquitin related modifier 1 homolog (S. cerevisiae) 215982 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16732 UROC1 urocanase domain containing 1 899925 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16733 UROD uroporphyrinogen decarboxylase 580008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16734 UROS uroporphyrinogen III synthase (congenital erythropoietic porphyria) 350844 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16735 USF2 upstream transcription factor 2, c-fos interacting 294060 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16736 USMG5 upregulated during skeletal muscle growth 5 homolog (mouse) 93795 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16737 USO1 USO1 homolog, vesicle docking protein (yeast) 1241643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16738 USP10 ubiquitin specific peptidase 10 1071798 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16739 USP14 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) 775203 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16740 USP16 ubiquitin specific peptidase 16 1287780 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16741 USP18 ubiquitin specific peptidase 18 498381 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16742 USP22 ubiquitin specific peptidase 22 574938 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16743 USP24 ubiquitin specific peptidase 24 3759405 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16744 USP26 ubiquitin specific peptidase 26 1392222 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16745 USP28 ubiquitin specific peptidase 28 1659411 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16746 USP3 ubiquitin specific peptidase 3 774696 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16747 USP30 ubiquitin specific peptidase 30 770133 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16748 USP32 ubiquitin specific peptidase 32 2507115 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16749 USP39 ubiquitin specific peptidase 39 749346 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16750 USP44 ubiquitin specific peptidase 44 1094613 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16751 USP48 ubiquitin specific peptidase 48 1564602 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16752 USP49 ubiquitin specific peptidase 49 828945 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16753 USP50 ubiquitin specific peptidase 50 489762 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16754 USP6NL USP6 N-terminal like 1169649 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16755 UTP11L UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) 402558 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16756 UTP18 UTP18, small subunit (SSU) processome component, homolog (yeast) 698139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16757 UTP23 288990 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16758 UTP3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) 655551 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16759 UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) 948090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16760 UTS2 urotensin 2 263640 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16761 UTS2D urotensin 2 domain containing 192660 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16762 UXT ubiquitously-expressed transcript 270738 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16763 VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) 205335 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16764 VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 185055 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16765 VAMP3 vesicle-associated membrane protein 3 (cellubrevin) 160719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16766 VAMP4 vesicle-associated membrane protein 4 230178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16767 VAMP5 vesicle-associated membrane protein 5 (myobrevin) 180492 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16768 VAMP7 vesicle-associated membrane protein 7 401037 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16769 VAMP8 vesicle-associated membrane protein 8 (endobrevin) 156156 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16770 VANGL1 vang-like 1 (van gogh, Drosophila) 812721 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16771 VAPB VAMP (vesicle-associated membrane protein)-associated protein B and C 351858 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16772 VARS valyl-tRNA synthetase 1775514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16773 VARS2 valyl-tRNA synthetase 2, mitochondrial (putative) 1647750 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16774 VASH2 vasohibin 2 342732 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16775 VASP vasodilator-stimulated phosphoprotein 431457 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16776 VAT1 vesicle amine transport protein 1 homolog (T. californica) 413205 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16777 VAT1L 523224 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16778 VAV2 vav 2 guanine nucleotide exchange factor 957723 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16779 VAX1 ventral anterior homeobox 1 292539 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16780 VAX2 ventral anterior homeobox 2 285441 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16781 VDAC1 voltage-dependent anion channel 1 448188 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16782 VDAC3 voltage-dependent anion channel 3 449709 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16783 VDR vitamin D (1,25- dihydroxyvitamin D3) receptor 666705 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16784 VEGFA vascular endothelial growth factor A 389376 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16785 VEGFB vascular endothelial growth factor B 191139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16786 VEGFC vascular endothelial growth factor C 576459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16787 VENTX VENT homeobox homolog (Xenopus laevis) 186069 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16788 VEPH1 ventricular zone expressed PH domain homolog 1 (zebrafish) 1345578 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16789 VEZF1 vascular endothelial zinc finger 1 787371 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16790 VGLL1 vestigial like 1 (Drosophila) 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16791 VGLL2 vestigial like 2 (Drosophila) 225108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16792 VHL von Hippel-Lindau tumor suppressor 157170 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16793 VHLL von Hippel-Lindau tumor suppressor-like 214968 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16794 VIM vimentin 441090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16795 VIPR1 vasoactive intestinal peptide receptor 1 521703 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16796 VIPR2 vasoactive intestinal peptide receptor 2 474552 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16797 VKORC1L1 vitamin K epoxide reductase complex, subunit 1-like 1 174915 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16798 VMA21 132327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16799 VMO1 vitelline membrane outer layer 1 homolog (chicken) 242346 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16800 VN1R1 vomeronasal 1 receptor 1 540462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16801 VN1R4 vomeronasal 1 receptor 4 461370 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16802 VN1R5 vomeronasal 1 receptor 5 546546 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16803 VOPP1 199251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16804 VPREB1 pre-B lymphocyte gene 1 225615 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16805 VPREB3 pre-B lymphocyte gene 3 134862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16806 VPS25 vacuolar protein sorting 25 homolog (S. cerevisiae) 281385 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16807 VPS26B vacuolar protein sorting 26 homolog B (S. pombe) 501930 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16808 VPS29 vacuolar protein sorting 29 homolog (S. cerevisiae) 291018 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16809 VPS36 vacuolar protein sorting 36 homolog (S. cerevisiae) 569361 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16810 VPS37C vacuolar protein sorting 37 homolog C (S. cerevisiae) 249951 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16811 VPS37D vacuolar protein sorting 37 homolog D (S. cerevisiae) 106470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16812 VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae) 1344057 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16813 VPS45 vacuolar protein sorting 45 homolog (S. cerevisiae) 898911 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16814 VRK1 vaccinia related kinase 1 628173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16815 VSIG2 V-set and immunoglobulin domain containing 2 480129 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16816 VSIG4 V-set and immunoglobulin domain containing 4 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16817 VSNL1 visinin-like 1 298116 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16818 VSTM2L V-set and transmembrane domain containing 2 like 208377 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16819 VSX2 visual system homeobox 2 244374 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16820 VTA1 Vps20-associated 1 homolog (S. cerevisiae) 484692 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16821 VTCN1 V-set domain containing T cell activation inhibitor 1 440583 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16822 VTI1A vesicle transport through interaction with t-SNAREs homolog 1A (yeast) 308763 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16823 VTI1B vesicle transport through interaction with t-SNAREs homolog 1B (yeast) 306228 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16824 VTN vitronectin 613470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16825 VWA2 von Willebrand factor A domain containing 2 994734 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16826 VWA5A 1233531 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16827 VWC2 von Willebrand factor C domain containing 2 147030 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16828 VWC2L 345267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16829 VWCE von Willebrand factor C and EGF domains 1323777 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16830 WAPAL wings apart-like homolog (Drosophila) 1848015 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16831 WARS tryptophanyl-tRNA synthetase 738192 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16832 WASF2 WAS protein family, member 2 775203 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16833 WBP1 WW domain binding protein 1 381771 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16834 WBP11 WW domain binding protein 11 998790 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16835 WBP2 WW domain binding protein 2 276822 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16836 WBP2NL WBP2 N-terminal like 450216 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16837 WBP5 WW domain binding protein 5 161733 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16838 WBSCR16 Williams-Beuren syndrome chromosome region 16 290004 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16839 WBSCR22 Williams Beuren syndrome chromosome region 22 453258 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16840 WDHD1 WD repeat and HMG-box DNA binding protein 1 1769430 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16841 WDR1 WD repeat domain 1 530829 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16842 WDR12 WD repeat domain 12 671268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16843 WDR16 WD repeat domain 16 935415 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16844 WDR19 WD repeat domain 19 1783119 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16845 WDR25 WD repeat domain 25 805623 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16846 WDR27 WD repeat domain 27 1093599 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16847 WDR31 WD repeat domain 31 577980 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16848 WDR34 WD repeat domain 34 491790 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16849 WDR38 WD repeat domain 38 454779 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16850 WDR4 WD repeat domain 4 429429 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16851 WDR41 WD repeat domain 41 698139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16852 WDR53 WD repeat domain 53 550095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16853 WDR54 WD repeat domain 54 527787 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16854 WDR55 WD repeat domain 55 597753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16855 WDR59 WD repeat domain 59 1460160 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16856 WDR5B WD repeat domain 5B 505479 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16857 WDR61 WD repeat domain 61 485706 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16858 WDR69 WD repeat domain 69 659100 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16859 WDR70 WD repeat domain 70 1032759 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16860 WDR73 WD repeat domain 73 536913 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16861 WDR77 WD repeat domain 77 443118 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16862 WDR8 WD repeat domain 8 529308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16863 WDR83 498888 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16864 WDR85 WD repeat domain 85 569361 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16865 WDR88 WD repeat domain 88 727545 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16866 WDR89 WD repeat domain 89 592176 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16867 WDR92 WD repeat domain 92 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16868 WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1 745797 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16869 WDTC1 WD and tetratricopeptide repeats 1 1016028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16870 WEE1 WEE1 homolog (S. pombe) 693069 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16871 WEE2 WEE1 homolog 2 (S. pombe) 888264 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16872 WFDC1 WAP four-disulfide core domain 1 210912 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16873 WFDC10A WAP four-disulfide core domain 10A 125736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16874 WFDC10B WAP four-disulfide core domain 10B 191139 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16875 WFDC12 WAP four-disulfide core domain 12 176436 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16876 WFDC13 WAP four-disulfide core domain 13 149058 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16877 WFDC2 WAP four-disulfide core domain 2 79092 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16878 WFDC3 WAP four-disulfide core domain 3 365040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16879 WFDC9 WAP four-disulfide core domain 9 142974 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16880 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 829959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16881 WHAMM 658593 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16882 WIBG within bgcn homolog (Drosophila) 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16883 WIPF1 WAS/WASL interacting protein family, member 1 761007 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16884 WIPI2 WD repeat domain, phosphoinositide interacting 2 620061 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16885 WNT1 wingless-type MMTV integration site family, member 1 334620 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16886 WNT10A wingless-type MMTV integration site family, member 10A 330057 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16887 WNT16 wingless-type MMTV integration site family, member 16 545025 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16888 WNT2 wingless-type MMTV integration site family member 2 549588 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16889 WNT3 wingless-type MMTV integration site family, member 3 243867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16890 WNT4 wingless-type MMTV integration site family, member 4 493311 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16891 WNT5A wingless-type MMTV integration site family, member 5A 393939 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16892 WNT7B wingless-type MMTV integration site family, member 7B 227643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16893 WNT8A wingless-type MMTV integration site family, member 8A 547560 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16894 WNT9B wingless-type MMTV integration site family, member 9B 511563 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16895 WRAP53 855309 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16896 WRB tryptophan rich basic protein 222573 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16897 WTIP Wilms tumor 1 interacting protein 291525 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16898 WWOX WW domain containing oxidoreductase 622596 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16899 WWP1 WW domain containing E3 ubiquitin protein ligase 1 1450527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16900 WWTR1 WW domain containing transcription regulator 1 478608 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16901 XAB2 XPA binding protein 2 730587 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16902 XAF1 XIAP associated factor 1 473538 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16903 XAGE3 X antigen family, member 3 178464 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16904 XAGE5 X antigen family, member 5 173901 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16905 XCL1 chemokine (C motif) ligand 1 180999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16906 XCL2 chemokine (C motif) ligand 2 180999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16907 XG Xg blood group 297102 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16908 XKR3 XK, Kell blood group complex subunit-related family, member 3 705744 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16909 XKR4 XK, Kell blood group complex subunit-related family, member 4 640341 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16910 XKR6 XK, Kell blood group complex subunit-related family, member 6 593190 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16911 XKR7 XK, Kell blood group complex subunit-related family, member 7 576459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16912 XKR8 XK, Kell blood group complex subunit-related family, member 8 355407 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16913 XPA xeroderma pigmentosum, complementation group A 339690 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16914 XPC xeroderma pigmentosum, complementation group C 1423656 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16915 XPR1 xenotropic and polytropic retrovirus receptor 1053546 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16916 XRCC2 X-ray repair complementing defective repair in Chinese hamster cells 2 430950 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16917 XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3 211419 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16918 XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kDa) 1157481 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16919 XYLB xylulokinase homolog (H. influenzae) 824382 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16920 XYLT1 xylosyltransferase I 1284231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16921 YARS tyrosyl-tRNA synthetase 830973 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16922 YARS2 tyrosyl-tRNA synthetase 2, mitochondrial 736164 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16923 YBX1 Y box binding protein 1 422331 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16924 YBX2 Y box binding protein 2 431964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16925 YEATS4 YEATS domain containing 4 333099 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16926 YIF1A Yip1 interacting factor homolog A (S. cerevisiae) 316368 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16927 YIF1B Yip1 interacting factor homolog B (S. cerevisiae) 170352 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16928 YIPF1 Yip1 domain family, member 1 483171 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16929 YIPF2 Yip1 domain family, member 2 447681 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16930 YIPF3 Yip1 domain family, member 3 509028 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16931 YIPF5 Yip1 domain family, member 5 402558 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16932 YKT6 YKT6 v-SNARE homolog (S. cerevisiae) 261105 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16933 YOD1 YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae) 436527 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16934 YPEL1 yippee-like 1 (Drosophila) 166296 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16935 YPEL2 yippee-like 2 (Drosophila) 190632 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16936 YPEL3 yippee-like 3 (Drosophila) 234234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16937 YPEL4 yippee-like 4 (Drosophila) 129285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16938 YPEL5 yippee-like 5 (Drosophila) 189618 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16939 YRDC yrdC domain containing (E. coli) 236769 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16940 YTHDC2 YTH domain containing 2 2115711 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16941 YTHDF2 YTH domain family, member 2 861900 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16942 YTHDF3 YTH domain family, member 3 886743 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16943 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 367575 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16944 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 365040 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16945 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 333606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16946 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 379236 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16947 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 384306 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16948 YY1 YY1 transcription factor 295074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16949 YY2 YY2 transcription factor 569361 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16950 ZACN zinc activated ligand-gated ion channel 526266 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16951 ZADH2 zinc binding alcohol dehydrogenase, domain containing 2 471003 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16952 ZAN zonadhesin 4134585 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16953 ZAR1 zygote arrest 1 164268 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16954 ZBED1 zinc finger, BED-type containing 1 1032759 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16955 ZBED2 zinc finger, BED-type containing 2 335127 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16956 ZBED4 zinc finger, BED-type containing 4 1605669 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16957 ZBP1 Z-DNA binding protein 1 665691 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16958 ZBTB1 zinc finger and BTB domain containing 1 1068756 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16959 ZBTB11 zinc finger and BTB domain containing 11 1466244 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16960 ZBTB12 zinc finger and BTB domain containing 12 562263 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16961 ZBTB2 zinc finger and BTB domain containing 2 787371 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16962 ZBTB26 zinc finger and BTB domain containing 26 674310 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16963 ZBTB32 zinc finger and BTB domain containing 32 752388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16964 ZBTB34 zinc finger and BTB domain containing 34 721461 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16965 ZBTB37 zinc finger and BTB domain containing 37 554658 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16966 ZBTB38 zinc finger and BTB domain containing 38 1821144 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16967 ZBTB39 zinc finger and BTB domain containing 39 1086501 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16968 ZBTB4 zinc finger and BTB domain containing 4 1298427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16969 ZBTB43 zinc finger and BTB domain containing 43 713856 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16970 ZBTB45 zinc finger and BTB domain containing 45 254514 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16971 ZBTB47 zinc finger and BTB domain containing 47 400530 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16972 ZBTB7B zinc finger and BTB domain containing 7B 825396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16973 ZBTB7C zinc finger and BTB domain containing 7C 687999 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16974 ZBTB8A 678366 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16975 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 287976 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16976 ZBTB9 zinc finger and BTB domain containing 9 722982 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16977 ZC3H12D zinc finger CCCH-type containing 12D 348816 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16978 ZC3H14 zinc finger CCCH-type containing 14 1332396 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16979 ZC3H8 zinc finger CCCH-type containing 8 402051 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16980 ZC3HAV1 zinc finger CCCH-type, antiviral 1 1243671 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16981 ZC3HAV1L zinc finger CCCH-type, antiviral 1-like 280878 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16982 ZCCHC10 zinc finger, CCHC domain containing 10 245388 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16983 ZCCHC13 zinc finger, CCHC domain containing 13 256035 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16984 ZCCHC14 zinc finger, CCHC domain containing 14 1123005 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16985 ZCCHC16 zinc finger, CCHC domain containing 16 475059 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16986 ZCCHC24 249444 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16987 ZCCHC3 zinc finger, CCHC domain containing 3 345267 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16988 ZCCHC4 zinc finger, CCHC domain containing 4 793455 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16989 ZCCHC9 zinc finger, CCHC domain containing 9 423852 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16990 ZCRB1 zinc finger CCHC-type and RNA binding motif 1 345774 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16991 ZCWPW2 zinc finger, CW type with PWWP domain 2 559221 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16992 ZDHHC11 zinc finger, DHHC-type containing 11 403065 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16993 ZDHHC12 zinc finger, DHHC-type containing 12 157677 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -16994 ZDHHC13 zinc finger, DHHC-type containing 13 829452 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16995 ZDHHC15 zinc finger, DHHC-type containing 15 576966 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16996 ZDHHC16 zinc finger, DHHC-type containing 16 595218 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16997 ZDHHC18 zinc finger, DHHC-type containing 18 436020 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -16998 ZDHHC19 zinc finger, DHHC-type containing 19 316875 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -16999 ZDHHC20 zinc finger, DHHC-type containing 20 445653 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17000 ZDHHC22 zinc finger, DHHC-type containing 22 301158 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17001 ZDHHC23 zinc finger, DHHC-type containing 23 631215 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17002 ZDHHC24 zinc finger, DHHC-type containing 24 296088 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17003 ZDHHC7 zinc finger, DHHC-type containing 7 482157 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17004 ZDHHC9 zinc finger, DHHC-type containing 9 573417 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17005 ZFAND2A zinc finger, AN1-type domain 2A 230178 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17006 ZFAND2B zinc finger, AN1-type domain 2B 377208 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17007 ZFAND3 zinc finger, AN1-type domain 3 320931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17008 ZFAND5 zinc finger, AN1-type domain 5 335634 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17009 ZFAND6 zinc finger, AN1-type domain 6 328029 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17010 ZFP1 zinc finger protein 1 homolog (mouse) 626652 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17011 ZFP14 zinc finger protein 14 homolog (mouse) 820326 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17012 ZFP2 zinc finger protein 2 homolog (mouse) 704730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17013 ZFP36 zinc finger protein 36, C3H type, homolog (mouse) 501423 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17014 ZFP57 zinc finger protein 57 homolog (mouse) 824889 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17015 ZFP82 818805 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17016 ZFP90 zinc finger protein 90 homolog (mouse) 958230 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17017 ZFX zinc finger protein, X-linked 1270035 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17018 ZFYVE19 zinc finger, FYVE domain containing 19 712335 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17019 ZFYVE20 zinc finger, FYVE domain containing 20 1216293 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17020 ZFYVE21 zinc finger, FYVE domain containing 21 286962 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17021 ZG16B 240825 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17022 ZGLP1 360984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17023 ZHX3 zinc fingers and homeoboxes 3 1454583 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17024 ZIM2 zinc finger, imprinted 2 784836 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17025 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 829959 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17026 ZKSCAN5 zinc finger with KRAB and SCAN domains 5 1289808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17027 ZMAT2 zinc finger, matrin type 2 316368 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17028 ZMAT3 zinc finger, matrin type 3 451230 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17029 ZMAT4 zinc finger, matrin type 4 308256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17030 ZMPSTE24 zinc metallopeptidase (STE24 homolog, S. cerevisiae) 744276 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17031 ZMYM1 zinc finger, MYM-type 1 1756755 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17032 ZMYM5 zinc finger, MYM-type 5 1074333 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17033 ZMYND10 zinc finger, MYND-type containing 10 623103 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17034 ZMYND11 zinc finger, MYND domain containing 11 953667 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17035 ZMYND12 zinc finger, MYND-type containing 12 560742 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17036 ZMYND17 zinc finger, MYND-type containing 17 713349 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17037 ZMYND19 zinc finger, MYND-type containing 19 331071 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17038 ZNF100 zinc finger protein 100 836043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17039 ZNF114 zinc finger protein 114 641862 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17040 ZNF117 zinc finger protein 117 740220 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17041 ZNF121 zinc finger protein 121 598767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17042 ZNF124 zinc finger protein 124 431964 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17043 ZNF132 zinc finger protein 132 1047462 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17044 ZNF133 zinc finger protein 133 1000818 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17045 ZNF134 zinc finger protein 134 632736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17046 ZNF136 zinc finger protein 136 830973 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17047 ZNF138 zinc finger protein 138 424866 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17048 ZNF14 zinc finger protein 14 986115 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17049 ZNF140 zinc finger protein 140 704730 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17050 ZNF143 zinc finger protein 143 1002339 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17051 ZNF146 zinc finger protein 146 447681 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17052 ZNF148 zinc finger protein 148 1221363 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17053 ZNF154 zinc finger protein 154 653523 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17054 ZNF155 zinc finger protein 155 827931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17055 ZNF16 zinc finger protein 16 1042899 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17056 ZNF17 zinc finger protein 17 1004874 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17057 ZNF175 zinc finger protein 175 1091064 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17058 ZNF177 zinc finger protein 177 550602 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17059 ZNF18 zinc finger protein 18 801567 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17060 ZNF182 zinc finger protein 182 952653 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17061 ZNF185 zinc finger protein 185 (LIM domain) 712842 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17062 ZNF187 zinc finger protein 187 521196 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17063 ZNF19 zinc finger protein 19 706251 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17064 ZNF193 zinc finger protein 193 606879 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17065 ZNF195 zinc finger protein 195 853281 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17066 ZNF2 zinc finger protein 2 656058 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17067 ZNF20 zinc finger protein 20 815256 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17068 ZNF207 zinc finger protein 207 777231 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17069 ZNF212 zinc finger protein 212 750360 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17070 ZNF213 zinc finger protein 213 626145 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17071 ZNF214 zinc finger protein 214 927303 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17072 ZNF221 zinc finger protein 221 948090 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17073 ZNF222 zinc finger protein 222 693576 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17074 ZNF223 zinc finger protein 223 742755 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17075 ZNF225 zinc finger protein 225 1083459 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17076 ZNF226 zinc finger protein 226 1258374 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17077 ZNF227 zinc finger protein 227 1224912 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17078 ZNF23 zinc finger protein 23 (KOX 16) 961779 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17079 ZNF232 zinc finger protein 232 671268 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17080 ZNF236 zinc finger protein 236 2631837 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17081 ZNF24 zinc finger protein 24 567333 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17082 ZNF248 zinc finger protein 248 890292 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17083 ZNF25 zinc finger protein 25 705237 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17084 ZNF253 zinc finger protein 253 768612 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17085 ZNF256 zinc finger protein 256 942513 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17086 ZNF257 zinc finger protein 257 865956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17087 ZNF259 zinc finger protein 259 639327 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17088 ZNF26 zinc finger protein 26 801567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17089 ZNF260 zinc finger protein 260 630201 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17090 ZNF264 zinc finger protein 264 944541 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17091 ZNF267 zinc finger protein 267 1139736 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17092 ZNF273 zinc finger protein 273 875082 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17093 ZNF275 zinc finger protein 275 492297 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17094 ZNF276 zinc finger protein 276 421824 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17095 ZNF277 zinc finger protein 277 680394 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17096 ZNF280A zinc finger protein 280A 827931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17097 ZNF280D zinc finger protein 280D 1576770 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17098 ZNF282 zinc finger protein 282 726531 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17099 ZNF284 zinc finger protein 284 910065 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17100 ZNF285 904995 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17101 ZNF287 zinc finger protein 287 1169142 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17102 ZNF302 zinc finger protein 302 616512 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17103 ZNF317 zinc finger protein 317 867984 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17104 ZNF319 zinc finger protein 319 375180 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17105 ZNF32 zinc finger protein 32 420810 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17106 ZNF321 zinc finger protein 321 252993 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17107 ZNF322A zinc finger protein 322A 529308 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17108 ZNF322B zinc finger protein 322B 500916 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17109 ZNF323 zinc finger protein 323 625131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17110 ZNF324B zinc finger protein 324B 825903 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17111 ZNF326 zinc finger protein 326 902967 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17112 ZNF331 zinc finger protein 331 711828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17113 ZNF34 zinc finger protein 34 747825 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17114 ZNF341 zinc finger protein 341 1178775 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17115 ZNF343 zinc finger protein 343 920712 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17116 ZNF346 zinc finger protein 346 372138 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17117 ZNF354A zinc finger protein 354A 914121 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17118 ZNF354C zinc finger protein 354C 852267 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17119 ZNF362 zinc finger protein 362 525252 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17120 ZNF367 zinc finger protein 367 329043 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17121 ZNF37A zinc finger protein 37A 862914 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17122 ZNF382 zinc finger protein 382 844155 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17123 ZNF383 zinc finger protein 383 732108 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17124 ZNF384 zinc finger protein 384 897390 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17125 ZNF385A zinc finger protein 385A 359970 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17126 ZNF385D zinc finger protein 385D 618540 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17127 ZNF391 zinc finger protein 391 548067 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17128 ZNF394 zinc finger protein 394 860886 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17129 ZNF395 zinc finger protein 395 636285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17130 ZNF396 zinc finger protein 396 516126 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17131 ZNF397 zinc finger protein 397 480636 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17132 ZNF397OS zinc finger protein 397 opposite strand 758979 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17133 ZNF404 zinc finger protein 404 840606 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17134 ZNF408 zinc finger protein 408 1023633 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17135 ZNF410 zinc finger protein 410 750867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17136 ZNF417 zinc finger protein 417 767091 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17137 ZNF419 zinc finger protein 419 779259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17138 ZNF428 zinc finger protein 428 224094 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17139 ZNF432 zinc finger protein 432 1001325 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17140 ZNF433 zinc finger protein 433 1029717 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17141 ZNF436 zinc finger protein 436 703716 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17142 ZNF44 zinc finger protein 44 941499 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17143 ZNF440 zinc finger protein 440 911079 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17144 ZNF442 zinc finger protein 442 963300 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17145 ZNF446 zinc finger protein 446 353379 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17146 ZNF451 zinc finger protein 451 1588431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17147 ZNF461 zinc finger protein 461 830973 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17148 ZNF468 zinc finger protein 468 801567 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17149 ZNF470 zinc finger protein 470 1100190 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17150 ZNF474 zinc finger protein 474 557193 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17151 ZNF485 zinc finger protein 485 666198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17152 ZNF490 zinc finger protein 490 816270 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17153 ZNF493 zinc finger protein 493 1188408 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17154 ZNF496 zinc finger protein 496 906516 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17155 ZNF503 zinc finger protein 503 251472 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17156 ZNF507 zinc finger protein 507 1461174 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17157 ZNF512B zinc finger protein 512B 791427 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17158 ZNF514 zinc finger protein 514 616005 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17159 ZNF517 zinc finger protein 517 276822 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17160 ZNF519 zinc finger protein 519 828945 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17161 ZNF529 zinc finger protein 529 740727 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17162 ZNF530 zinc finger protein 530 901446 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17163 ZNF534 zinc finger protein 534 559728 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17164 ZNF546 zinc finger protein 546 1283217 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17165 ZNF547 zinc finger protein 547 619047 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17166 ZNF550 zinc finger protein 550 585078 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17167 ZNF555 zinc finger protein 555 961272 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17168 ZNF557 zinc finger protein 557 667719 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17169 ZNF558 zinc finger protein 558 625131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17170 ZNF559 zinc finger protein 559 827931 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17171 ZNF564 zinc finger protein 564 847197 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17172 ZNF566 zinc finger protein 566 646932 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17173 ZNF57 zinc finger protein 57 850239 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17174 ZNF581 zinc finger protein 581 303186 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17175 ZNF585A zinc finger protein 585A 1093599 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17176 ZNF593 zinc finger protein 593 107991 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17177 ZNF595 zinc finger protein 595 993720 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17178 ZNF596 zinc finger protein 596 778245 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17179 ZNF599 zinc finger protein 599 892827 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17180 ZNF605 zinc finger protein 605 982566 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17181 ZNF607 zinc finger protein 607 1068249 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17182 ZNF614 zinc finger protein 614 899418 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17183 ZNF622 zinc finger protein 622 739206 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17184 ZNF624 zinc finger protein 624 1327326 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17185 ZNF628 zinc finger protein 628 660621 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17186 ZNF629 zinc finger protein 629 1043406 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17187 ZNF630 zinc finger protein 630 1008930 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17188 ZNF639 zinc finger protein 639 747318 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17189 ZNF641 zinc finger protein 641 730587 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17190 ZNF643 zinc finger protein 643 711828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17191 ZNF653 zinc finger protein 653 689013 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17192 ZNF664 zinc finger protein 664 400530 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17193 ZNF668 zinc finger protein 668 900939 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17194 ZNF669 zinc finger protein 669 581022 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17195 ZNF670 zinc finger protein 670 597753 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17196 ZNF672 zinc finger protein 672 328536 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17197 ZNF673 zinc finger protein 673 269724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17198 ZNF676 zinc finger protein 676 901953 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17199 ZNF677 zinc finger protein 677 895869 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17200 ZNF682 zinc finger protein 682 763542 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17201 ZNF684 zinc finger protein 684 584571 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17202 ZNF691 zinc finger protein 691 435513 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17203 ZNF692 zinc finger protein 692 719940 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17204 ZNF697 zinc finger protein 697 214461 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17205 ZNF701 zinc finger protein 701 750867 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17206 ZNF704 zinc finger protein 704 606879 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17207 ZNF705A zinc finger protein 705A 467961 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17208 ZNF706 zinc finger protein 706 121173 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17209 ZNF708 zinc finger protein 708 865956 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17210 ZNF709 zinc finger protein 709 984594 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17211 ZNF714 zinc finger protein 714 825396 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17212 ZNF718 zinc finger protein 718 725010 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17213 ZNF74 zinc finger protein 74 734643 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17214 ZNF746 zinc finger protein 746 588627 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17215 ZNF749 zinc finger protein 749 1181310 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17216 ZNF750 zinc finger protein 750 1057095 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17217 ZNF763 zinc finger protein 763 613470 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17218 ZNF764 zinc finger protein 764 307242 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17219 ZNF766 zinc finger protein 766 721461 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17220 ZNF768 zinc finger protein 768 802074 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17221 ZNF773 zinc finger protein 773 663156 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17222 ZNF776 zinc finger protein 776 776724 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17223 ZNF777 zinc finger protein 777 1211223 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17224 ZNF778 zinc finger protein 778 1105767 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17225 ZNF782 zinc finger protein 782 1072812 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17226 ZNF785 zinc finger protein 785 517647 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17227 ZNF789 zinc finger protein 789 677352 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17228 ZNF790 zinc finger protein 790 976989 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17229 ZNF792 zinc finger protein 792 952146 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17230 ZNF793 zinc finger protein 793 627159 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17231 ZNF799 zinc finger protein 799 987636 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17232 ZNF80 zinc finger protein 80 418782 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17233 ZNF800 zinc finger protein 800 1021605 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17234 ZNF804A zinc finger protein 804A 1796808 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17235 ZNF813 zinc finger protein 813 946062 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17236 ZNF816A zinc finger protein 816A 997776 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17237 ZNF821 zinc finger protein 821 574431 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17238 ZNF826 zinc finger protein 826 272766 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17239 ZNF828 zinc finger protein 828 1238601 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17240 ZNF830 zinc finger protein 830 569361 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17241 ZNF836 1431261 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17242 ZNF839 1279668 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17243 ZNF84 zinc finger protein 84 1132131 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17244 ZNF846 822354 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17245 ZNF85 zinc finger protein 85 914628 0 0 0 2 0 0 0 0 0 0 1.00 1.00 -17246 ZNF880 416247 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17247 ZNF883 580008 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17248 ZNF92 zinc finger protein 92 900939 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17249 ZNF98 zinc finger protein 98 (F7175) 870519 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17250 ZNHIT1 zinc finger, HIT type 1 245895 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17251 ZNHIT2 zinc finger, HIT type 2 191646 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17252 ZNHIT3 zinc finger, HIT type 3 235248 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17253 ZNHIT6 736671 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17254 ZNRD1 zinc ribbon domain containing 1 201279 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17255 ZNRF2 zinc and ring finger 2 137904 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17256 ZP1 zona pellucida glycoprotein 1 (sperm receptor) 918177 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17257 ZP3 zona pellucida glycoprotein 3 (sperm receptor) 636285 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17258 ZPBP zona pellucida binding protein 485199 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17259 ZPBP2 zona pellucida binding protein 2 531843 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17260 ZSCAN18 zinc finger and SCAN domain containing 18 378729 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17261 ZSCAN2 zinc finger and SCAN domain containing 2 985101 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17262 ZSCAN20 zinc finger and SCAN domain containing 20 1602120 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17263 ZSCAN22 zinc finger and SCAN domain containing 22 674817 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17264 ZSCAN29 zinc finger and SCAN domain containing 29 1307553 0 0 0 1 0 0 0 0 0 0 1.00 1.00 -17265 ZSCAN4 zinc finger and SCAN domain containing 4 666198 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17266 ZSWIM1 zinc finger, SWIM-type containing 1 741234 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17267 ZSWIM7 zinc finger, SWIM-type containing 7 184041 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17268 ZW10 ZW10, kinetochore associated, homolog (Drosophila) 1218828 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17269 ZWINT ZW10 interactor 438555 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17270 ZXDB zinc finger, X-linked, duplicated B 779259 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17271 ZYG11B zyg-11 homolog B (C. elegans) 1144299 0 0 0 0 0 0 0 0 0 0 1.00 1.00 -17272 ZYX zyxin 765570 0 0 0 1 0 0 0 0 0 0 1.00 1.00 diff --git a/core/src/test/resources/testCancerStudy.txt b/core/src/test/resources/testCancerStudy.txt deleted file mode 100644 index e364692dede..00000000000 --- a/core/src/test/resources/testCancerStudy.txt +++ /dev/null @@ -1,5 +0,0 @@ -type_of_cancer: GBM -cancer_study_identifier: tcga_gbm -name: Glioblastoma (TCGA) -description: The Cancer Genome Atlas (TCGA) Glioblastoma project. 206 primary glioblastoma samples.
    Nature 2008. Raw data via the TCGA Data Portal. -reference_genome: hg19 diff --git a/core/src/test/resources/test_PR_GDAC_CANCER.medianexp.txt b/core/src/test/resources/test_PR_GDAC_CANCER.medianexp.txt deleted file mode 100644 index 768e91b7c0b..00000000000 --- a/core/src/test/resources/test_PR_GDAC_CANCER.medianexp.txt +++ /dev/null @@ -1,7 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-02-0001-01C-01R TCGA-02-0002-01A-01R TCGA-02-0003-01A-01R TCGA-02-0004-01A-01R TCGA-02-0005-01A-01D-0182-01 TCGA-02-0006-01A-01D-0182-01 -Composite Element REF signal signal signal signal signal signal -AACS 65985 1 0 0 -1 1 1 -ELMO2 63916 3 -1 -1 1 1 5 -TP53 7157 2 1 0 0 1 1 -RPS11 6205 0 4 2 2 0 -2 -PNMA1 9240 1 2 -2 2 -2 4 diff --git a/core/src/test/resources/test_all_thresholded.by_genes.txt b/core/src/test/resources/test_all_thresholded.by_genes.txt deleted file mode 100644 index 0ebb71d7f45..00000000000 --- a/core/src/test/resources/test_all_thresholded.by_genes.txt +++ /dev/null @@ -1,7 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Cytoband TCGA-02-0001-01C-01D-0182-01 TCGA-02-0002-01A-01D-0182-01 TCGA-02-0003-01A-01D-0182-01 TCGA-02-0004-01A-01D-0182-01 TCGA-02-0005-01A-01D-0182-01 TCGA-02-9999-01A-01D-0182-01 -AACS 65985 12p13.31 1 0 0 0 0 0 -ELMO2 63916 8p22 -1 0 0 0 0 0 -PNMA1 9240 1p31.1 1 0 0 0 0 0 -RPS11 6205 12q24.31 0 1 0 0 0 0 -TP53 7157 12q24.31 1 1 2 2 0 2 -AR 367 8p22 0 0 0 0 0 0 diff --git a/core/src/test/resources/test_drugbank_small.xml b/core/src/test/resources/test_drugbank_small.xml deleted file mode 100644 index ac03433d180..00000000000 --- a/core/src/test/resources/test_drugbank_small.xml +++ /dev/null @@ -1,860 +0,0 @@ - - - - DB00001 - Lepirudin - Lepirudin is identical to natural hirudin except for substitution of leucine for isoleucine at the N-terminal end of the molecule and the absence of a sulfate group on the tyrosine at position 63. It is produced via yeast cells. - - 120993-53-5 - # Smythe MA, Stephens JL, Koerber JM, Mattson JC: A comparison of lepirudin and argatroban outcomes. Clin Appl Thromb Hemost. 2005 Oct;11(4):371-4. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/16244762 -# Tardy B, Lecompte T, Boelhen F, Tardy-Poncet B, Elalamy I, Morange P, Gruel Y, Wolf M, Francois D, Racadot E, Camarasa P, Blouch MT, Nguyen F, Doubine S, Dutrillaux F, Alhenc-Gelas M, Martin-Toutain I, Bauters A, Ffrench P, de Maistre E, Grunebaum L, Mouton C, Huisse MG, Gouault-Heilmann M, Lucke V: Predictive factors for thrombosis and major bleeding in an observational study in 181 patients with heparin-induced thrombocytopenia treated with lepirudin. Blood. 2006 Sep 1;108(5):1492-6. Epub 2006 May 11. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/16690967 -# Lubenow N, Eichler P, Lietz T, Greinacher A: Lepirudin in patients with heparin-induced thrombocytopenia - results of the third prospective study (HAT-3) and a combined analysis of HAT-1, HAT-2, and HAT-3. J Thromb Haemost. 2005 Nov;3(11):2428-36. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/16241940 -# Askari AT, Lincoff AM: Antithrombotic Drug Therapy in Cardiovascular Disease. 2009 Oct; pp. 440–. ISBN 9781603272346. "Google books":http://books.google.com/books?id=iadLoXoQkWEC&pg=PA440. - - For the treatment of heparin-induced thrombocytopenia - Lepirudin is used to break up clots and to reduce thrombocytopenia. It binds to thrombin and prevents thrombus or clot formation. It is a highly potent, selective, and essentially irreversible inhibitor of thrombin and clot-bond thrombin. Lepirudin requires no cofactor for its anticoagulant action. Lepirudin is a recombinant form of hirudin, an endogenous anticoagulant found in medicinal leeches. - Lepirudin forms a stable non-covalent complex with alpha-thrombin, thereby abolishing its ability to cleave fibrinogen and initiate the clotting cascade. The inhibition of thrombin prevents the blood clotting cascade. - In case of overdose (eg, suggested by excessively high aPTT values) the risk of bleeding is increased. - Lepirudin is thought to be metabolized by release of amino acids via catabolic hydrolysis of the parent drug. However, con-clusive data are not available. About 48% of the administration dose is excreted in the urine which consists of unchanged drug (35%) and other fragments of the parent drug. - Bioavailability is 100% following injection. - Approximately 1.3 hours - - Lepirudin is thought to be metabolized by release of amino acids via catabolic hydrolysis of the parent drug. About 48% of the administration dose is excreted in the urine which consists of unchanged drug (35%) and other fragments of the parent drug. - * 12.2 L [Healthy young subjects (n = 18, age 18-60 years)] -* 18.7 L [Healthy elderly subjects (n = 10, age 65-80 years)] -* 18 L [Renally impaired patients (n = 16, creatinine clearance below 80 mL/min)] -* 32.1 L [HIT patients (n = 73)] - * 164 ml/min [Healthy 18-60 yrs] -* 139 ml/min [Healthy 65-80 yrs] -* 61 ml/min [renal impaired] -* 114 ml/min [HIT (Heparin-induced thrombocytopenia)] - - BIOD00024 - BTD00024 - - - approved - - - - - - - Hirudin variant-1 - - - Refludan - - - - - Bayer Healthcare - http://www.bayerhealthcare.com - - - Berlex Labs - http://www.berlex.com - - - - Bayer healthcare pharmaceuticals inc - - - - Refludan 50 mg vial - 273.19 - vial - - - - Anticoagulants - Antithrombotic Agents - Fibrinolytic Agents - - - Humans and other mammals - - - -

    Powder, for solution
    - Intravenous - - - - - B01AE02 - - - 20:12.04.12 - - - - 5180668 - United States - 1993-01-19 - 2010-01-19 - - - 1339104 - Canada - 1997-07-29 - 2014-07-29 - - - - - - 374 - The prostacyclin analogue, Treprostinil, increases the risk of bleeding when combined with the anticoagulant, Lepirudin. Monitor for increased bleeding during concomitant thearpy. - - - 1381 - Additive anticoagulant/antiplatelet effects may increase bleed risk. Concomitant therapy should be avoided. - - - - -
    DB00001 sequence
    - LVYTDCTESGQNLCLCEGSNVCGQGNKCILGSDGEKNQCVTGEGTPKPQSHNDGDFEEIPEEYLQ -     -     - - - logP/hydrophobicity - -0.777 - - - - Molecular Weight - 6963.4250 - - - - Molecular Formula - C287H440N80O110S6 - - - - - - Drugs Product Database (DPD) - 2240996 - - - National Drug Code Directory - 50419-150-57 - - - PharmGKB - PA450195 - - - UniProtKB - P01050 - - - - - Wikipedia - http://en.wikipedia.org/wiki/Lepirudin - - - RxList - http://www.rxlist.com/cgi/generic/lepirudin.htm - - - Drugs.com - http://www.drugs.com/cdi/lepirudin.html - - - - - - inhibitor - - # Turpie AG: Anticoagulants in acute coronary syndromes. Am J Cardiol. 1999 Sep 2;84(5A):2M-6M. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10505536 -# Warkentin TE: Venous thromboembolism in heparin-induced thrombocytopenia. Curr Opin Pulm Med. 2000 Jul;6(4):343-51. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10912644 -# Eriksson BI: New therapeutic options in deep vein thrombosis prophylaxis. Semin Hematol. 2000 Jul;37(3 Suppl 5):7-9. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11055889 -# Fabrizio MC: Use of ecarin clotting time (ECT) with lepirudin therapy in heparin-induced thrombocytopenia and cardiopulmonary bypass. J Extra Corpor Technol. 2001 May;33(2):117-25. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11467439 -# Szaba FM, Smiley ST: Roles for thrombin and fibrin(ogen) in cytokine/chemokine production and macrophage adhesion in vivo. Blood. 2002 Feb 1;99(3):1053-9. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11807012 -# Chen X, Ji ZL, Chen YZ: TTD: Therapeutic Target Database. Nucleic Acids Res. 2002 Jan 1;30(1):412-5. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11752352 - yes - - - - - - - - DB00002 - Cetuximab - Epidermal growth factor receptor binding FAB. Cetuximab is composed of the Fv (variable; antigen-binding) regions of the 225 murine EGFr monoclonal antibody specific for the N-terminal portion of human EGFr with human IgG1 heavy and kappa light chain constant (framework) regions. - 205923-56-4 - - - For treatment of EGFR-expressing metastatic colorectal cancer in patients who are refractory to other irinotecan-based chemotherapy regimens. Cetuximab is also indicated for treatment of squamous cell carcinoma of the head and neck in conjucntion with radiation therapy. - Used in the treatment of colorectal cancer, cetuximab binds specifically to the epidermal growth factor receptor (EGFr, HER1, c-ErbB-1) on both normal and tumor cells. EGFr is over-expressed in many colorectal cancers. Cetuximab competitively inhibits the binding of epidermal growth factor (EGF) and other ligands, such as transforming growth factor–alpha. Binding of cetuximab to the EGFr blocks phosphorylation and activation of receptor-associated kinases, resulting in inhibition of cell growth, induction of apoptosis, decreased matrix metalloproteinase secretion and reduced vascular endothelial growth factor production. - Cetuximab binds to the epidermal growth factor receptor (EGFr) on both normal and tumor cells. EGFr is over-expressed in many colorectal cancers. Cetuximab competitively inhibits the binding of epidermal growth factor (EGF) and TGF alpha, thereby reducing their effects on cell growth and metastatic spread. - Single doses of cetuximab higher than 500 mg/m<sup>2</sup> have not been tested. There is no experience with overdosage in human clinical trials. - - - - - 114 hrs - - - - - - BIOD00071 - BTD00071 - - - approved - - - - - - - Anti EGFR - cetuximab - IMC-C225 - - - Erbitux - - - - - Cardinal Health - http://www.cardinal.com - - - Catalent Pharma Solutions - http://www.catalent.com - - - ImClone Systems Inc. - http://www.imclone.com - - - Oso Biopharmaceuticals Manufacturing LLC - - - - - - - Antineoplastic Agents - - - Humans and other mammals - - - -
    Solution
    - Intravenous - -     -     - - L01XC06 - - - - - 1340417 - Canada - 1999-03-02 - 2016-03-02 - - - - - - -
    Anti-EGFR heavy chain 1
    - QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGVIWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALTYYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK -     - -
    Anti-EGFR light chain 1
    - DILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGA -     - -
    Anti-EGFR heavy chain 2
    - QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGVIWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALTYYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK -     - -
    Anti-EGFR light chain 2
    - DILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGA -     -     - - - logP/hydrophobicity - -0.413 - - - - Molecular Weight - 145781.6000 - - - - Molecular Formula - C6484H10042N1732O2023S36 - - - - - - Drugs Product Database (DPD) - 0 - - - National Drug Code Directory - 66733-948-23 - - - GenBank - J00228 - - - PharmGKB - PA10040 - - - - - Wikipedia - http://en.wikipedia.org/wiki/Cetuximab - - - RxList - http://www.rxlist.com/cgi/generic3/erbitux.htm - - - Drugs.com - http://www.drugs.com/cdi/cetuximab.html - - - - - - antagonist - - # Hosokawa N, Yamamoto S, Uehara Y, Hori M, Tsuchiya KS: Effect of thiazinotrienomycin B, an ansamycin antibiotic, on the function of epidermal growth factor receptor in human stomach tumor cells. J Antibiot (Tokyo). 1999 May;52(5):485-90. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10480573 -# Wakita H, Takigawa M: Activation of epidermal growth factor receptor promotes late terminal differentiation of cell-matrix interaction-disrupted keratinocytes. J Biol Chem. 1999 Dec 24;274(52):37285-91. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10601294 -# Suwa T, Ueda M, Jinno H, Ozawa S, Kitagawa Y, Ando N, Kitajima M: Epidermal growth factor receptor-dependent cytotoxic effect of anti-EGFR antibody-ribonuclease conjugate on human cancer cells. Anticancer Res. 1999 Sep-Oct;19(5B):4161-5. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10628369 -# Burke P, Schooler K, Wiley HS: Regulation of epidermal growth factor receptor signaling by endocytosis and intracellular trafficking. Mol Biol Cell. 2001 Jun;12(6):1897-910. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11408594 -# Viloria-Petit A, Crombet T, Jothy S, Hicklin D, Bohlen P, Schlaeppi JM, Rak J, Kerbel RS: Acquired resistance to the antitumor effect of epidermal growth factor receptor-blocking antibodies in vivo: a role for altered tumor angiogenesis. Cancer Res. 2001 Jul 1;61(13):5090-101. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11431346 -# Chen X, Ji ZL, Chen YZ: TTD: Therapeutic Target Database. Nucleic Acids Res. 2002 Jan 1;30(1):412-5. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11752352 - yes - - - - # Snyder LC, Astsaturov I, Weiner LM: Overview of monoclonal antibodies and small molecules targeting the epidermal growth factor receptor pathway in colorectal cancer. Clin Colorectal Cancer. 2005 Nov;5 Suppl 2:S71-80. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/16336752 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 -# Zhang W, Gordon M, Schultheis AM, Yang DY, Nagashima F, Azuma M, Chang HM, Borucka E, Lurje G, Sherrod AE, Iqbal S, Groshen S, Lenz HJ: FCGR2A and FCGR3A polymorphisms associated with clinical outcome of epidermal growth factor receptor expressing metastatic colorectal cancer patients treated with single-agent cetuximab. J Clin Oncol. 2007 Aug 20;25(24):3712-8. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17704420 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 - unknown - - - - # Negri DR, Tosi E, Valota O, Ferrini S, Cambiaggi A, Sforzini S, Silvani A, Ruffini PA, Colnaghi MI, Canevari S: In vitro and in vivo stability and anti-tumour efficacy of an anti-EGFR/anti-CD3 F(ab')2 bispecific monoclonal antibody. Br J Cancer. 1995 Oct;72(4):928-33. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/7547242 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 -# Zhang W, Gordon M, Schultheis AM, Yang DY, Nagashima F, Azuma M, Chang HM, Borucka E, Lurje G, Sherrod AE, Iqbal S, Groshen S, Lenz HJ: FCGR2A and FCGR3A polymorphisms associated with clinical outcome of epidermal growth factor receptor expressing metastatic colorectal cancer patients treated with single-agent cetuximab. J Clin Oncol. 2007 Aug 20;25(24):3712-8. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17704420 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 - unknown - - - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 - unknown - - - - - -     - - DB00003 - Dornase Alfa - Dornase alfa is a biosynthetic form of human deoxyribunuclease I (DNase I) enzyme. It is produced in genetically modified Chinese hamster ovary (CHO) cells using recombinant DNA technology. The 260-amino acid sequence of dornase alfa is identical to the endogenous human enzyme. Dornase alfa cleaves extracellular DNA to 5´-phosphodinucleotide and 5´-phosphooligonucleotide end products without affecting intracellular DNA. In individuals with cystic fibrosis, extracellular DNA, which is an extremely viscous anion, is released by degenerating leukocytes that accumulate during inflammatory responses to infections. Enzymatic breakdown of this extracellular DNA appears to reduce sputum viscosity and viscoelasticity. - 9003-98-9 - # Cramer GW, Bosso JA: The role of dornase alfa in the treatment of cystic fibrosis. Ann Pharmacother. 1996 Jun;30(6):656-61. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/8792953 -# Jones AP, Wallis C: Dornase alfa for cystic fibrosis. Cochrane Database Syst Rev. 2010 Mar 17;3:CD001127. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/20238314 -# Riethmueller J, Kumpf M, Borth-Bruhns T, Brehm W, Wiskirchen J, Sieverding L, Ankele C, Hofbeck M, Baden W: Clinical and in vitro effect of dornase alfa in mechanically ventilated pediatric non-cystic fibrosis patients with atelectases. Cell Physiol Biochem. 2009;23(1-3):205-10. Epub 2009 Feb 18. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/19255515 - - - Used as adjunct therapy in the treatment of cystic fibrosis. - Cystic fibrosis (CF) is a disease characterized by the retention of viscous purulent secretions in the airways. These thick secretions contribute both to reduced pulmonary function and to frequent pulmonary infection. Purulent pulmonary secretions of individuals with cystic fibrosis contain very high concentrations of extracellular DNA released by degenerating leukocytes that accumulate in response to these infections. Dornase alfa hydrolyzes the DNA in sputum of CF patients and reduces sputum viscosity and viscoelasticity. The enzyme does not appear to affect sputum in the absence of an inflammatory response to infection, nor does it affect the sputum of healthy individuals. - Dornase alfa is a biosynthetic form of human DNase I. The enzyme is involved in endonucleolytic cleavage of extracellular DNA to 5´-phosphodinucleotide and 5´-phosphooligonucleotide end products. It has no effect on intracellular DNA. Optimal activity is dependent on the presence of divalent cations such as calcium and magnesium. Extracellular DNA is a viscous anionic polymer and its breakdown appears to improve the viscosity and viscoelasticity of purulent sputum of individuals with CF. - Adverse reactions occur at a frequency of < 1/1000 and are usually mild and transient in nature. Reported adverse effects include chest pain (pleuritic/non-cardiac), fever, dyspepsia, voice alteration (hoarseness), pharyngitis, dyspnea, laryngitis, rhinitis, decreased lung function, rash, urticaria, and conjunctivitis. - - Systemic absorption undetectable following administration by inhalation. - - - - - - - BIOD00001 - BTD00001 - - - approved - - - - - - - Deoxyribonuclease I - Deoxyribonuclease-1 precursor - DNase - DNase I - rhDNase - - - Pulmozyme - Viscozyme - - - - Cauterex - dornase alfa + fibrinolysin + gentamicin sulfate - - - Clorfibrase - dornase alfa + fibrinolysin + chloramphenicol - - - Elase - dornase alfa + fibrinolysin - - - Fibrabene - dornase alfa + fibrinolysin (bovine) - - - Fibrase SA - dornase alfa + fibrinolysin (bovine) - - - Fibrolan - dornase alfa + fibrinolysin (bovine) - - - Parkelase - dornase alfa + fibrinolysin - - - Ridasa - dornase alfa + ribonuclease - - - - - Cardinal Health - http://www.cardinal.com - - - Catalent Pharma Solutions - http://www.catalent.com - - - F Hoffmann-La Roche Ltd. - http://www.roche.com - - - Genentech Inc. - http://www.gene.com - - - Meda AB - http://www.meda.se - - - Medpointe Pharmaceuticals - - - - - Genentech, Inc - - - - Lufyllin 200 mg tablet - 3.21 - tablet - - - Lufyllin-gg tablet - 3.84 - tablet - - - Lufyllin-GG 200-200 mg tablet - 3.99 - tablet - - - Lufyllin-400 tablet - 4.62 - tablet - - - Lufyllin 400 mg tablet - 4.81 - tablet - - - Pulmozyme 1 mg/ml ampul - 37.05 - ml - - - Pulmozyme 1 mg/ml Solution 2.5ml Plastic Container - 77.06 - plastic - - - Lufyllin-GG 100-100 mg/15ml Elixir - 0.6 - ml - - - - Enzyme - - - Humans and other mammals - - - -
    Solution
    - Respiratory (inhalation) - 1 mg/ml -     -     - - R05CB13 - - - 44:00 - - - - 2184581 - Canada - 2005-02-22 - 2015-02-28 - - - 2137237 - Canada - 2004-10-26 - 2013-05-28 - - - - - - -
    DB00003 sequence
    - LKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVMLK -     -     - - - logP/hydrophobicity - -0.083 - - - - Molecular Weight - 29253.9000 - - - - Molecular Formula - C1321H1999N339O396S9 - - - - - - Drugs Product Database (DPD) - 2046733 - - - GenBank - M55983 - - - PharmGKB - PA10318 - - - UniProtKB - P24855 - - - - - Wikipedia - http://en.wikipedia.org/wiki/Dornase_alfa - - - RxList - http://www.rxlist.com/cgi/generic/pulmozyme.htm - - - Drugs.com - http://www.drugs.com/cdi/dornase-alfa.html - - - - - - # Cramer GW, Bosso JA: The role of dornase alfa in the treatment of cystic fibrosis. Ann Pharmacother. 1996 Jun;30(6):656-61. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/8792953 - yes - - - - - -     - - DB00004 - Denileukin diftitox - A recombinant DNA-derived cytotoxic protein composed of the amino acid sequences for diphtheria toxin fragments A and B (Met 1-Thr 387)-His followed by the sequences for interleukin-2 (IL-2; Ala 1-Thr 133). It is produced in an E. coli expression system. - 173146-27-5 - # Turturro F: Denileukin diftitox: a biotherapeutic paradigm shift in the treatment of lymphoid-derived disorders. Expert Rev Anticancer Ther. 2007 Jan;7(1):11-7. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17187516 -# Park M, Liu GT, Piltz-Seymour J, Wisda CL, Rook AH, Junkins-Hopkins JM, Nasta SD, Kim EJ: Vision loss following denileukin diftitox treatment: a case report of possible posterior ischemic optic neuropathy. Leuk Lymphoma. 2007 Apr;48(4):808-11. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17454642 - - For treatment of cutaneous T-cell lymphoma - Denileukin diftitox (Ontak) directs the cytocidal action of diphtheria toxin to cells which express the IL-2 receptor. The human IL-2 receptor exists in three forms, low (CD25), intermediate (CD122/CD132) and high (CD25/CD122/CD132) affinity. Malignant cells expressing one or more of the subunits of the IL-2 receptor are found in certain leukemias and lymphomas including cutaneous T-cell lymphoma (CTCL). Ontak interacts with the high affinity IL-2 receptor on the cell surface and inhibits cellular protein synthesis, resulting in cell death within hours. - Denileukin diftitox binds to the high-affinity IL-2 receptor complex. The IL-2 receptor (Tac) subunit is expressed on activated but not resting lymphocytes. The diphtheria toxin associated with Ontak then selectively kills the IL-2 bearing cells. - - - - 70-80 min - - - * 0.06 to 0.09 L/kg - * 0.6 - 2.0 mL/min/kg [Lymphoma] - - BIOD00084 - BTD00084 - - - approved - - - Organic - - Polypeptides - - - - denileukin diftitox - Diphtheria toxin precursor - DT - NAD(+--diphthamide ADP- ribosyltransferase) - - - Ontak - - - - - Eisai Inc. - http://www.eisai.com - - - Hollister-Stier Laboratories LLC - http://www.hollisterstier.com - - - Ligand Pharmaceuticals Inc. - http://www.ligand.com - - - - - - Ontak 150 mcg/ml vial - 878.4 - ml - - - - Antineoplastic Agents - - - Humans and other mammals - - - -
    Solution
    - Intravenous - -     -     - - L01XX29 - - - - - - - 72 - Trastuzumab may increase the risk of neutropenia and anemia. Monitor closely for signs and symptoms of adverse events. - - - - -
    DB00004 sequence
    - MGADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINFETRGKRGQDAMYEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQVVHNSYNRPAYSPGHKTHAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFCQSIISTLT -     -     - - - logP/hydrophobicity - -0.301 - - - - Molecular Weight - 57647.3000 - - - - Molecular Formula - C2560H4042N678O799S17 - - - - - - Drugs Product Database (DPD) - 0 - - - National Drug Code Directory - 62856-603-01 - - - GenBank - V01536 - - - PharmGKB - PA10317 - - - UniProtKB - P00587 - - - - - Wikipedia - http://en.wikipedia.org/wiki/Denileukin_diftitox - - - RxList - http://www.rxlist.com/cgi/generic2/denileukin.htm - - - Drugs.com - http://www.drugs.com/cdi/denileukin-diftitox.html - - - - - - binder - - # Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17139284 -# Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17016423 -# Kiyokawa T, Shirono K, Hattori T, Nishimura H, Yamaguchi K, Nichols JC, Strom TB, Murphy JR, Takatsuki K: Cytotoxicity of interleukin 2-toxin toward lymphocytes from patients with adult T-cell leukemia. Cancer Res. 1989 Jul 15;49(14):4042-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/2786749 -# Murphy JR, Kelley VE, Strom TB: Interleukin 2 toxin: a step toward selective immunomodulation. Am J Kidney Dis. 1988 Feb;11(2):159-62. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/3124610 -# Duvic M, Talpur R: Optimizing denileukin diftitox (Ontak) therapy. Future Oncol. 2008 Aug;4(4):457-69. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/18684057 -# Turturro F: Denileukin diftitox: a biotherapeutic paradigm shift in the treatment of lymphoid-derived disorders. Expert Rev Anticancer Ther. 2007 Jan;7(1):11-7. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17187516 -# Chen X, Ji ZL, Chen YZ: TTD: Therapeutic Target Database. Nucleic Acids Res. 2002 Jan 1;30(1):412-5. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11752352 - yes - - - - # Foss F, Demierre MF, DiVenuti G: A phase-1 trial of bexarotene and denileukin diftitox in patients with relapsed or refractory cutaneous T-cell lymphoma. Blood. 2005 Jul 15;106(2):454-7. Epub 2005 Apr 5. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/15811959 -# Foss F: Clinical experience with denileukin diftitox (ONTAK). Semin Oncol. 2006 Feb;33(1 Suppl 3):S11-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/16516670 -# Foss FM: DAB(389)IL-2 (denileukin diftitox, ONTAK): a new fusion protein technology. Clin Lymphoma. 2000 Nov;1 Suppl 1:S27-31. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11707860 - unknown - - - - agonist - - # Foss F, Demierre MF, DiVenuti G: A phase-1 trial of bexarotene and denileukin diftitox in patients with relapsed or refractory cutaneous T-cell lymphoma. Blood. 2005 Jul 15;106(2):454-7. Epub 2005 Apr 5. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/15811959 -# Foss F: Clinical experience with denileukin diftitox (ONTAK). Semin Oncol. 2006 Feb;33(1 Suppl 3):S11-6. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/16516670 -# Duvic M, Talpur R: Optimizing denileukin diftitox (Ontak) therapy. Future Oncol. 2008 Aug;4(4):457-69. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/18684057 -# Turturro F: Denileukin diftitox: a biotherapeutic paradigm shift in the treatment of lymphoid-derived disorders. Expert Rev Anticancer Ther. 2007 Jan;7(1):11-7. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/17187516 -# Chen X, Ji ZL, Chen YZ: TTD: Therapeutic Target Database. Nucleic Acids Res. 2002 Jan 1;30(1):412-5. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/11752352 - yes - - - - - -     - diff --git a/core/src/test/resources/test_drugbank_targets.csv b/core/src/test/resources/test_drugbank_targets.csv deleted file mode 100644 index 456e54c7d75..00000000000 --- a/core/src/test/resources/test_drugbank_targets.csv +++ /dev/null @@ -1,92 +0,0 @@ -54,Prothrombin,F2,339641,M17262,P00734,THRB_HUMAN,1HAG,F2,F2,HGNC:3535,01488 -540,Sodium-dependent noradrenaline transporter,SLC6A2,189258,M65105,P23975,SC6A2_HUMAN,"",SLC6A2,SLC6A2,HGNC:11048,01232 -541,"cAMP-specific 3',5'-cyclic phosphodiesterase 4B",PDE4B,347122,L20966,Q07343,PDE4B_HUMAN,1TB5,PDE4B,PDE4B,HGNC:8781,02528 -543,Penicillin-binding protein 1B,mrcB,42468,X02163,P02919,PBPB_ECOLI,"",,,, -544,Potassium voltage-gated channel subfamily E member 1,KCNE1,386838,M26685,P15382,KCNE1_HUMAN,,KCNE1,KCNE1,HGNC:6240,01442 -545,Thyrotropin receptor,TSHR,903760,M73747,P16473,TSHR_HUMAN,"",TSHR,TSHR,HGNC:12373,04537 -546,"Isoleucyl-tRNA synthetase, cytoplasmic",IARS,551622,D28473,P41252,SYIC_HUMAN,"",IARS,IARS,HGNC:5330,02832 -547,"Propionyl-CoA carboxylase alpha chain, mitochondrial",PCCA,296366,X14608,P05165,PCCA_HUMAN,"",PCCA,PCCA,HGNC:8653,01981 -548,"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial",NDUFS1,38079,X61100,P28331,NDUS1_HUMAN,"",NDUFS1,NDUFS1,HGNC:7707,01145 -549,Choline-phosphate cytidylyltransferase B,PCYT1B,3153239,AF052510,Q9Y5K3,PCY1B_HUMAN,,PCYT1B,PCYT1B,HGNC:8755,05376 -5410,Unsaturated glucuronyl hydrolase,ugl,"",AB019619,Q9RC92,UGL_BACGL,1VD5,"","","", -5411,Slt-IIvB,stxB2e,"",AB252836,Q47644,Q47644_ECOLX,1QOH,"","","", -5412,ATP sulfurylase,TTHA0666,"",AP008226,Q5SKH7,Q5SKH7_THET8,1V47,"","","", -5413,5'-fluoro-5'-deoxyadenosine synthase,flA,"",AJ581748,Q70GK9,Q70GK9_STRCT,1RQP,"","","", -5414,Fiber protein,L5,"",X94485,Q64822,Q64822_9ADEN,1UXB,"","","", -5416,Coat protein VP1,"","",M34958,P49302,VP1_POVMP,1SIE,"","","", -5418,Fiber protein,L5,"",X94484,Q64823,Q64823_9ADEN,1UXE,"","","", -5420,4-chlorobenzoyl CoA ligase,"","",AF537222,Q8GN86,Q8GN86_9BURK,1T5D,"","","", -5421,"Uridine phosphorylase, putative",PFE0660c,"",AL929352,Q8I3X4,Q8I3X4_PLAF7,1Q1G,"","","", -5422,B-N-acetylhexosaminidase,hex,"",AF063001,O85361,O85361_STRPL,1M01,"","","", -5423,UPF0010 protein HI1317,HI_1317,"",L42023,P44160,Y1317_HAEIN,"","","","", -5424,Endonuclease VIII-like 1,NEIL1,"",AB079068,Q96FI4,NEIL1_HUMAN,"","",NEIL1,HGNC:18448, -5426,Non-heme chloroperoxidase,cpo,"",AF031242,O31168,PRXC_STRAU,1A8U,"","","", -5427,"Hydroxyquinol 1,2-dioxygenase",chqB,"",AY822041,Q5PXQ6,CHQB_NOCSI,1TMX,"","","", -5428,Replication protein,repA,"",X58896,Q52546,Q52546_PSESX,1HKQ,"","","", -5430,Hepatocyte nuclear factor 4-gamma,HNF4G,"",Z49826,Q14541,HNF4G_HUMAN,1LV2,"",HNF4G,HGNC:5026, -5431,Lipid binding protein,"","","",P83812,P83812_GEOSE,1PZX,"","","", -5432,Trafficking protein particle complex subunit 3,TRAPPC3,"",AJ224335,O43617,TPPC3_HUMAN,1SZ7,"",TRAPPC3,HGNC:19942, -5433,UPF0230 protein TM_1468,TM_1468,"",AE000512,Q9X1H9,Y1468_THEMA,1MGP,"","","", -5435,Deoxycytidylate 5-hydroxymethyltransferase,42,"",Y00148,P08773,DCHM_BPT4,1B5E,"","","", -5436,Hydrolase,"","","",Q7SIE9,Q7SIE9_THESP,1GKQ,"","","", -5437,Putative alkylsulfatase,atsK,"",AF126201,Q9WWU5,Q9WWU5_PSEPU,1OIJ,"","","", -5439,33 kDa chaperonin,hslO,"",AP009048,P0A6Y5,HSLO_ECOLI,1I7F,"","","", -5440,UPF0067 protein yebR,yebR,"",U00096,P76270,YEBR_ECOLI,1VHM,"","","", -5443,UPF0189 protein ymdB,ymdB,"",U00096,P0A8D6,YMDB_ECOLI,1SPV,"","","", -5445,Beta-lactamase,blaB,"",X80128,P52664,BLAB_PROVU,1HZO,"","","", -5446,3-deoxy-D-manno-octulosonate 8-phosphate phosphatase,HI_1679,"",L42023,P45314,KDOP_HAEIN,1K1E,"","","", -5447,Lethal(3)malignant brain tumor-like protein,L3MBTL1,"",U89358,Q9Y468,LMBL1_HUMAN,1OZ2,"",L3MBTL,HGNC:15905, -5448,Ribonuclease Z,rnz,"",D84432,P54548,RNZ_BACSU,1Y44,"","","", -5449,Hypothetical gliding protein,mglB,"",L09121,Q9X9L0,Q9X9L0_THETH,1J3W,"","","", -5450,Prolyl endopeptidase Pep,pep,"",AF127082,Q9X5N2,Q9X5N2_MYXXA,2BKL,"","","", -5454,Internalin-A,inlA,"",AJ012346,P25146,INLA_LISMO,1O6V,"","","", -5455,Arylsulfatase A,ARSA,"",X52151,P15289,ARSA_HUMAN,1E2S,"",ARSA,HGNC:713, -5461,Coagulation factor IX,F9,"",AB186358,Q5FBE1,Q5FBE1_HUMAN,1RFN,"",F9,HGNC:3551, -5463,Calcium-activated potassium channel subunit beta 2,KCNMB2,"",AF099137,Q9Y691,KCMB2_HUMAN,1JO6,"",KCNMB2,HGNC:6286, -5466,Putative sugar kinase,STM4066,"",AE008890,Q8ZKR2,Q8ZKR2_SALTY,1TZ6,"","","", -5469,Head decoration protein,shp,"",M81255,P36275,VSHP_BPP21,1TD3,"","","", -5480,Pituitary adenylate cyclase-activating polypeptide,ADCYAP1,"",S83513,P18509,PACA_HUMAN,1GEA,"",ADCYAP1,HGNC:241, -5481,Trans-sialidase,TCTS-154,"",D50685,Q26964,Q26964_TRYCR,1S0K,"","","", -5482,Sialidase-2,NEU2,"",Y16535,Q9Y3R4,NEUR2_HUMAN,1VCU,"",NEU2,HGNC:7759, -5483,Annexin A3,ANXA3,"",M20560,P12429,ANXA3_HUMAN,1AII,"",ANXA3,HGNC:541, -5484,Maltogenic amylase,"","",AF060204,O69007,O69007_9DEIN,1SMA,"","","", -5487,Nogalonic acid methyl ester cyclase,snoaL,"",AF187532,Q9RN59,Q9RN59_STRNO,1SJW,"","","", -5488,PPH,pph,"",AF064527,Q9X2W8,Q9X2W8_RHOCE,1MZU,"","","", -5489,Ribonucleoside-diphosphate reductase 1 subunit beta,nrdB,"",K02672,P69924,RIR2_ECOLI,1MXR,"","","", -5490,Aspartate aminotransferase,"","","",P83786,P83786_THETH,1IUG,"","","", -5491,Methionine gamma-lyase,mdeA,"",D88554,P13254,MEGL_PSEPU,1PG8,"","","", -5492,Cystathionine gamma-synthase,metB,"",K01546,P00935,METB_ECOLI,1CS1,"","","", -5493,Tyrosine aminotransferase,"","","",P33447,ATTY_TRYCR,1BW0,"","","", -5497,N-acylamino acid racemase,DR_0044,"",AE000513,Q9RYA6,Q9RYA6_DEIRA,1XS2,"","","", -5498,Maltoporin,lamB,"",M26131,P02943,LAMB_ECOLI,1MPQ,"","","", -844,Epidermal growth factor receptor,EGFR,757924,X00588,P00533,EGFR_HUMAN,1IVO,EGFR,EGFR,HGNC:3236,00579 -1102,Low affinity immunoglobulin gamma Fc region receptor III-B,FCGR3B,31322,X16863,O75015,FCG3B_HUMAN,1E4K,FCGR3B,FCGR3B,HGNC:3620,09951 -3814,Complement C1r subcomponent,C1R,29539,X04701,P00736,C1R_HUMAN,1GPZ,C1R,C1R,HGNC:1246, -3815,Complement C1q subcomponent subunit A,C1QA,4894854,AF135157,P02745,C1QA_HUMAN,1PK6,C1QA,C1QA,HGNC:1241, -3816,Complement C1q subcomponent subunit B,C1QB,573114,X03084,P02746,C1QB_HUMAN,1PK6,C1QB,C1QB,HGNC:1242, -3817,Complement C1q subcomponent subunit C,C1QC,33150626,AF087892,P02747,C1QC_HUMAN,1PK6,C1QC,C1QC,HGNC:1245, -3818,Low affinity immunoglobulin gamma Fc region receptor III-A,FCGR3A,31324,X52645,P08637,FCG3A_HUMAN,1E4K,FCGR3A,FCGR3A,HGNC:3619, -2782,Complement C1s subcomponent,C1S,763110,X06596,P09871,C1S_HUMAN,1ELV,C1S,C1S,HGNC:1247,00397 -784,High affinity immunoglobulin gamma Fc receptor I,FCGR1A,31332,X14356,P12314,FCGR1_HUMAN,"",FCGR1A,FCGR1A,HGNC:3613,00904 -3819,Low affinity immunoglobulin gamma Fc region receptor II-a,FCGR2A,182474,M31932,P12318,FCG2A_HUMAN,1H9V,FCGR2A,FCGR2A,HGNC:3616, -3820,Low affinity immunoglobulin gamma Fc region receptor II-b,FCGR2B,4099445,U87560,P31994,FCG2B_HUMAN,2FCB,FCGR2B,FCGR2B,HGNC:3618, -3821,Low affinity immunoglobulin gamma Fc region receptor II-c,FCGR2C,32074,X17652,P31995,FCG2C_HUMAN,2FCB,FCGR2C,FCGR2C,HGNC:15626, -874,DNA,"","","","","",1BNA,"","","", -724,Interleukin-2 receptor alpha chain,IL2RA,33813,X01057,P01589,IL2RA_HUMAN,"",IL2RA,IL2RA,HGNC:6008,00986 -7243,Reverse transcriptase,,,,Q5DNL9,,,,,, -7244,UDP-glucuronosyltransferase 1-6,,,,P19224,,,,,, -7245,UDP-glucuronosyltransferase 1-7,,,,Q9HAW7,,,,,, -7246,UDP-glucuronosyltransferase 2B15,,,,P54855,,,,,, -7248,Neutral alpha-glucosidase AB,,,,Q14697,,,,,, -7249,Neutral alpha-glucosidase C,,,,Q8TET4,,,,,, -3823,Cytokine receptor common gamma chain,IL2RG,219890,D11086,P31785,IL2RG_HUMAN,"",IL2RG,IL2RG,HGNC:6010, -717,Interleukin-2 receptor subunit beta,IL2RB,307048,M26062,P14784,IL2RB_HUMAN,"",IL2RB,IL2RB,HGNC:6009,00896 -7170,30S ribosomal protein S7,rpsG,,,P02359,RS7_ECOLI,,,,, -7171,Trivalent metal cations,,,,"",,,,,, -7172,Penicillin-binding protein 3,pbp3,,,Q2FGH1,Q2FGH1_STAA3,,,,, -7173,Inhibitor of nuclear factor kappa-B kinase subunit alpha,CHUK,,,O15111,IKKA_HUMAN,,,,, -7174,PbpA,pbpA,,,Q65HB5,Q65HB5_BACLD,,,,, -7175,Dihydropteroate synthase,sulI,,,P0C002,DHP1_ECOLX,,,,, -7176,Folic acid synthesis protein FOL1,FOL1,,,P53848,FOL1_YEAST,,,,, -7177,"Pencillin Binding Protein 3, P. aeruginosa",,,,"",,,,,, -7178,Smoothened homolog,SMO,,,Q99835,SMO_HUMAN,,,,, diff --git a/core/src/test/resources/test_germline_white_list_file.txt b/core/src/test/resources/test_germline_white_list_file.txt deleted file mode 100644 index 9a0f9550753..00000000000 --- a/core/src/test/resources/test_germline_white_list_file.txt +++ /dev/null @@ -1,3 +0,0 @@ -FOO -BAR -BIG diff --git a/core/src/test/resources/test_germline_white_list_file2.txt b/core/src/test/resources/test_germline_white_list_file2.txt deleted file mode 100644 index dcaa9062ac2..00000000000 --- a/core/src/test/resources/test_germline_white_list_file2.txt +++ /dev/null @@ -1,2 +0,0 @@ -CLEC7A -GPR19 diff --git a/core/src/test/resources/test_global_white_list_file.txt b/core/src/test/resources/test_global_white_list_file.txt deleted file mode 100644 index 4628ffb728f..00000000000 --- a/core/src/test/resources/test_global_white_list_file.txt +++ /dev/null @@ -1,4 +0,0 @@ -1 -4 -3 -101 diff --git a/core/src/test/resources/test_groups.txt b/core/src/test/resources/test_groups.txt deleted file mode 100644 index 505b566fd2c..00000000000 --- a/core/src/test/resources/test_groups.txt +++ /dev/null @@ -1,51 +0,0 @@ -CLUSTER_ID -YEATS4=3 -SMARCA2=1 -KLF6=1 -JAK2=0 -PDGFRA=2 -FN1=2 -VLDLR=0 -MET=0 -PIK3C2B=0 -CCT6A=4 -ING4=1 -PIK3R1=0 -PRKDC=1 -EP300=1 -TNC=2 -PTPRD=5 -MDM2=1 -PIK3CA=0 -TP53=1 -NF1=1 -TEK=0 -CDKN2A=1 -KDR=2 -AGAP2=0 -PSIP1=6 -CDKN2B=1 -ADAM12=0 -EGFR=0 -ITGB3=2 -TRRAP=3 -CCND2=1 -ERBB2=0 -MPDZ=0 -BRCA2=1 -PRELP=2 -PTPRE=5 -TNK2=0 -CCT2=4 -BNC2=1 -MSH6=3 -KIT=0 -SNAPC3=1 -FRS2=2 -MGMT=1 -NUP107=6 -CDK4=1 -RB1=1 -MDM4=1 -SH3GL2=0 -PTEN=1 diff --git a/core/src/test/resources/test_meta_treatment_missing_pivot.txt b/core/src/test/resources/test_meta_treatment_missing_pivot.txt deleted file mode 100644 index 92f2359be8f..00000000000 --- a/core/src/test/resources/test_meta_treatment_missing_pivot.txt +++ /dev/null @@ -1,11 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: GENERIC_ASSAY -generic_assay_type: TREATMENT_RESPONSE -datatype: IC50 -stable_id: treatment_ic50 -profile_name: IC50 values of compounds on cellular phenotype readout -profile_description: IC50 (compound concentration resulting in half maximal inhibition) of compounds on cellular phenotype readout of cultured mutant cell lines. -data_filename: data_treatment_ic50.txt -show_profile_in_analysis_tab: true -value_sort_order: asc -generic_entity_meta_properties: NAME,DESCRIPTION,URL \ No newline at end of file diff --git a/core/src/test/resources/test_meta_treatment_missing_sortorder.txt b/core/src/test/resources/test_meta_treatment_missing_sortorder.txt deleted file mode 100644 index 92f2359be8f..00000000000 --- a/core/src/test/resources/test_meta_treatment_missing_sortorder.txt +++ /dev/null @@ -1,11 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: GENERIC_ASSAY -generic_assay_type: TREATMENT_RESPONSE -datatype: IC50 -stable_id: treatment_ic50 -profile_name: IC50 values of compounds on cellular phenotype readout -profile_description: IC50 (compound concentration resulting in half maximal inhibition) of compounds on cellular phenotype readout of cultured mutant cell lines. -data_filename: data_treatment_ic50.txt -show_profile_in_analysis_tab: true -value_sort_order: asc -generic_entity_meta_properties: NAME,DESCRIPTION,URL \ No newline at end of file diff --git a/core/src/test/resources/test_mut_sig_data.txt b/core/src/test/resources/test_mut_sig_data.txt deleted file mode 100644 index 40183c8c344..00000000000 --- a/core/src/test/resources/test_mut_sig_data.txt +++ /dev/null @@ -1,41 +0,0 @@ -rank gene N n nVal nVer CpG C+G A+T Indel p q -1 TP53 145177 48 48 0 18 17 10 3 <1E-11 <1E-8 -2 PTEN 156252 34 29 5 6 9 7 12 <1E-11 <1E-8 -3 ERBB2 283387 12 10 2 0 0 11 1 <1E-11 <1E-8 -4 EGFR 502500 20 19 1 4 13 3 0 <1E-11 <1E-8 -5 PIK3R1 179077 7 6 1 0 3 0 4 <1E-11 <1E-8 -6 PIK3CA 224502 8 7 1 1 2 3 2 <1E-11 <1E-8 -7 RB1 352773 10 9 1 2 5 2 1 <1E-11 <1E-8 -8 NF1 648932 14 12 2 0 8 2 4 <1E-11 <1E-8 -9 AKT1 150306 5 5 0 5 0 0 0 1.82E-07 0.000027 -10 PIK3C2G 488304 5 5 0 3 0 2 0 4.61E-07 0.000061 -11 CHEK2 198210 3 3 0 0 0 3 0 0.000015 0.0018 -12 GSTM5 73031 2 2 0 0 0 2 0 0.000085 0.0094 -13 PSMD13 135428 3 3 0 0 3 0 0 0.000093 0.0095 -14 HLA-E 79934 2 2 0 0 2 0 0 0.0012 0.11 -15 DDR2 273743 3 3 0 1 2 0 0 0.0014 0.13 -16 EYA1 204422 2 2 0 2 0 0 0 0.0018 0.15 -17 PDGFRA 431737 3 3 0 0 2 1 0 0.0027 0.21 -18 DGKG 148991 1 1 0 0 0 0 1 0.004 0.3 -19 DES 150589 2 2 0 1 0 1 0 0.0043 0.3 -20 IFITM3 44764 1 1 0 0 0 1 0 0.0052 0.35 -21 GRIA2 206175 1 1 0 0 0 0 1 0.0057 0.36 -22 PAX5 79891 1 1 0 0 0 1 0 0.011 0.62 -23 PIM1 76311 1 1 0 0 0 1 0 0.011 0.62 -24 PRKCZ 141349 2 2 0 1 1 0 0 0.011 0.62 -25 EPHA3 353916 2 2 0 0 1 1 0 0.014 0.65 -26 TNFRSF1B 101137 1 0 1 0 0 1 0 0.014 0.65 -27 MARK1 270729 2 2 0 0 2 0 0 0.014 0.65 -28 CHEK1 118243 1 1 0 1 0 0 0 0.014 0.65 -29 FGFR1 353008 2 2 0 0 1 1 0 0.014 0.65 -30 SLC12A6 309520 2 2 0 0 2 0 0 0.017 0.77 -31 SERPINA3 56482 1 1 0 1 0 0 0 0.019 0.82 -32 FGFR3 126195 1 1 0 0 0 1 0 0.021 0.82 -33 IL1RL1 139413 1 1 0 0 0 1 0 0.021 0.82 -34 BCL2 40874 1 0 1 0 1 0 0 0.021 0.82 -35 EPHA8 240563 2 2 0 2 0 0 0 0.022 0.82 -36 BCL11A 261151 2 2 0 2 0 0 0 0.023 0.85 -37 APBB1IP 177542 1 1 0 1 0 0 0 0.026 0.89 -38 RNF38 179619 1 1 0 0 0 1 0 0.027 0.89 -39 NRAS 42746 1 0 1 0 1 0 0 0.028 0.89 -40 KRAS 51445 1 1 0 0 1 0 0 0.028 0.89 \ No newline at end of file diff --git a/core/src/test/resources/test_pihelper_drugs.tsv b/core/src/test/resources/test_pihelper_drugs.tsv deleted file mode 100644 index 65856b3b461..00000000000 --- a/core/src/test/resources/test_pihelper_drugs.tsv +++ /dev/null @@ -1,11 +0,0 @@ -# File generated by PiHelper. Please see the project web site for further details on data use terms. -# Exporter: DrugExporter -# Time: 2012.11.07 at 14:34:14 EST -PiHelper_Drug_ID Drug_Name Drug_Synonyms Description Number_of_Targets ATC_Codes isFdaApproved isCancerDrug isNutraceutical Number_Of_Clinical_Trials DataSources References -33611 Lepirudin Refludan;Hirudin variant-1 "Lepirudin is identical to natural hirudin except for substitution of leucine for isoleucine at the N-terminal end of the molecule and the absence of a sulfate group on the tyrosine at position 63. It is produced via yeast cells." 3 B01AE02; true false false -1 DrugBank; doi:10.1038/nrd3478:1112;KEGG:D06880;National Drug Code Directory:50419-150-57;Drugs Product Database (DPD):2240996;UniProtKB:P01050;PharmGKB:PA450195;DrugBank:DB00001 -33612 Cetuximab IMC-C225;Erbitux;Cetuximab;Anti EGFR "Epidermal growth factor receptor binding FAB. Cetuximab is composed of the Fv (variable; antigen-binding) regions of the 225 murine EGFr monoclonal antibody specific for the N-terminal portion of human EGFr with human IgG1 heavy and kappa light chain constant (framework) regions." 14 L01XC06; true true false 204 DrugBank; doi:10.1038/nrd3478:197;KEGG:D03455;PharmGKB:PA10040;GenBank:J00228;NCI_Drug:42384;DrugBank:DB00002;National Drug Code Directory:66733-948-23 -33613 Dornase Alfa Viscozyme;Deoxyribonuclease I;rhDNase;DNase I;DNase;Deoxyribonuclease-1 precursor;Pulmozyme "Dornase alfa is a biosynthetic form of human deoxyribunuclease I (DNase I) enzyme. It is produced in genetically modified Chinese hamster ovary (CHO) cells using recombinant DNA technology. The 260-amino acid sequence of dornase alfa is identical to the endogenous human enzyme. Dornase alfa cleaves extracellular DNA to 5´-phosphodinucleotide and 5´-phosphooligonucleotide end products without affecting intracellular DNA. In individuals with cystic fibrosis, extracellular DNA, which is an extremely viscous anion, is released by degenerating leukocytes that accumulate during inflammatory responses to infections. Enzymatic breakdown of this extracellular DNA appears to reduce sputum viscosity and viscoelasticity. " 0 R05CB13; true false false -1 DrugBank; GenBank:M55983;UniProtKB:P24855;PharmGKB:PA10318;Drugs Product Database (DPD):2046733;DrugBank:DB00003 -33614 Denileukin diftitox DT;Denileukin Diftitox;Diphtheria toxin precursor;NAD(+--diphthamide ADP- ribosyltransferase);Ontak "A recombinant DNA-derived cytotoxic protein composed of the amino acid sequences for diphtheria toxin fragments A and B (Met 1-Thr 387)-His followed by the sequences for interleukin-2 (IL-2; Ala 1-Thr 133). It is produced in an E. coli expression system." 9 L01XX29; true true false 7 DrugBank; KEGG:D03682;National Drug Code Directory:62856-603-01;DrugBank:DB00004;GenBank:V01536;PharmGKB:PA10317;doi:10.1038/nrd3478:597;doi:10.1038/nrd3478:598;UniProtKB:P00587;doi:10.1038/nrd3478:599;NCI_Drug:42325 -33615 Etanercept Tumor necrosis factor receptor 2;Enbrel;Enbrel Sureclick;Tumor necrosis factor receptor type II;TNF-R2;p75;p80 TNF-alpha receptor;Tumor necrosis factor receptor superfamily member 1B precursor;Enbrel (Immunex Corp);CD120b "Dimeric fusion protein consisting of the extracellular ligand-binding portion of the human 75 kilodalton (p75) tumor necrosis factor receptor (TNFR) linked to the Fc portion of human IgG1. The Fc component of etanercept contains the CH2 domain, the CH3 domain and hinge region, but not the CH1 domain of IgG1. Etanercept is produced by recombinant DNA technology in a Chinese hamster ovary (CHO) mammalian cell expression system. It consists of 934 amino acids" 17 L04AB01; true false false -1 DrugBank; UniProtKB:P20333;KEGG Drug:D00742;DrugBank:DB00005;doi:10.1038/nrd3478:804;PharmGKB:PA449515;GenBank:M32315;KEGG:D00742;KEGG Compound:C07897;Drugs Product Database (DPD):2242903;National Drug Code Directory:58406-455-04 -33616 Bivalirudin Angiox;Angiomax "Bivalirudin is a synthetic 20 residue peptide (thrombin inhibitor) which reversibly inhibits thrombin. Once bound to the active site, thrombin cannot activate fibrinogen into fibrin, the crucial step in the formation of thrombus. It is administered intravenously. Because it can cause blood stagnation, it is important to monitor changes in hematocrit, activated partial thromboplastin time, international normalized ratio and blood pressure. " 3 B01AE06; true false false -1 DrugBank; Drugs Product Database (DPD):2246533;DrugBank:DB00006;KEGG:D03136;doi:10.1038/nrd3478:222;PharmGKB:PA10032;National Drug Code Directory:65293-001-01 -33724 Biotin Bios II;Lutavit H2;Coenzyme R;Factor S;Bioepiderm;D-Biotin;Vitamin B7;Biotin Forte;Rovimix H2;cis-(+)-Tetrahydro-2-oxothieno[3,4]imidazoline-4-valeric acid;(+)-cis-Hexahydro-2-oxo-1H-thieno[3,4]imidazole-4-valeric acid;Meribin;Biodermatin;D(+)-Biotin;Vitamin H "A water-soluble, enzyme co-factor present in minute amounts in every living cell. It occurs mainly bound to proteins or polypeptides and is abundant in liver, kidney, pancreas, yeast, and milk. [PubChem]" 9 A11HA05; true false true -1 DrugBank; DrugBank:DB00121;PDB:BTN;ChEBI:15956;ChemSpider:149962;KEGG Compound:C00120;KEGG Drug:D00029;Drugs Product Database (DPD):189189;PubChem Substance:46508694;BindingDB:12;PharmGKB:PA448625;PubChem Compound:171548 diff --git a/core/src/test/resources/test_pihelper_drugtargets.tsv b/core/src/test/resources/test_pihelper_drugtargets.tsv deleted file mode 100644 index 678b3b9767c..00000000000 --- a/core/src/test/resources/test_pihelper_drugtargets.tsv +++ /dev/null @@ -1,29 +0,0 @@ -# File generated by PiHelper. Please see the project web site for further details on data use terms. -# Exporter: DrugTargetExporter -# Time: 2012.11.07 at 15:01:44 EST -PiHelper_DrugTarget_ID HGNC_Symbol Drug_Name DataSources References -1 F2 Lepirudin PubMed:10912644;PubMed:10505536;PubMed:11467439;PubMed:11752352;PubMed:11055889;PubMed:11807012 -2 EGFR Cetuximab PubMed:11408594;PubMed:10601294;PubMed:10628369;PubMed:11752352;PubMed:10480573;PubMed:11431346 -3 FCGR3B Cetuximab PubMed:16336752; -4 C1R Cetuximab PubMed:17016423;PubMed:17139284 -5 C1QA Cetuximab PubMed:17016423;PubMed:17139284 -6 C1QB Cetuximab PubMed:17016423;PubMed:17139284 -7 C1QC Cetuximab PubMed:17016423;PubMed:17139284 -8 FCGR3A Cetuximab PubMed:17016423;PubMed:17704420;PubMed:17139284 -9 C1S Cetuximab PubMed:17016423;PubMed:17139284 -10 FCGR1A Cetuximab PubMed:7547242; -11 FCGR2A Cetuximab PubMed:17016423;PubMed:17704420;PubMed:17139284 -12 FCGR2B Cetuximab PubMed:17016423;PubMed:17139284 -13 FCGR2C Cetuximab PubMed:17016423;PubMed:17139284 -14 IL2RA Denileukin diftitox PubMed:17016423;PubMed:17187516;PubMed:18684057;PubMed:2786749;PubMed:3124610;PubMed:11752352;PubMed:17139284 -15 IL2RB Denileukin diftitox PubMed:16516670;PubMed:17187516;PubMed:18684057;PubMed:15811959;PubMed:11752352 -16 IL2RG Denileukin diftitox PubMed:11707860;PubMed:16516670;PubMed:15811959 -582 PCCB Biotin PubMed:17016423;PubMed:15623830;PubMed:9311592;PubMed:14997352;PubMed:17139284 -583 HLCS Biotin PubMed:16359899;PubMed:17056793;PubMed:16772434 -584 SLC5A6 Biotin PubMed:17374649;PubMed:17038304;PubMed:17135299;PubMed:16749865 -585 MCCC2 Biotin PubMed:17659996;PubMed:17254330;PubMed:17266990;PubMed:16707089 -586 ACACB Biotin PubMed:17477831; -587 MCCC1 Biotin PubMed:16773504; -588 PC Biotin PubMed:17659996;PubMed:17297119;PubMed:17008113;PubMed:17478118;PubMed:17316367 -589 PCCA Biotin PubMed:17016423;PubMed:15623830;PubMed:9311592;PubMed:12385775;PubMed:17139284 -590 ACACA Biotin PubMed:17468269;PubMed:16460018;PubMed:16545081;PubMed:16636450;PubMed:16707089 diff --git a/core/src/test/resources/test_readable_categories.txt b/core/src/test/resources/test_readable_categories.txt deleted file mode 100644 index 64bf24de2e1..00000000000 --- a/core/src/test/resources/test_readable_categories.txt +++ /dev/null @@ -1,15 +0,0 @@ -TUMORRESIDUALDISEASE : Tumor Residual Disease - -TUMORGRADE : Tumor Grade - -VITALSTATUS : Vital Status -PlatinumStatus : Platinum Status - -# this line is intentionally constructed incorrectly... - - TUMORSTAGE : Tumor Stage -PERSONNEOPLASMCANCERSTATUS : Person Neoplasm Cancer Status - ProgressionFreeStatus : Progression Free Status -PRIMARYTHERAPYOUTCOMESUCCESS : Primary Therapy Outcome Success - -## another incorrect line ## diff --git a/core/src/test/resources/test_significantly_mutated_gene_list_file.txt b/core/src/test/resources/test_significantly_mutated_gene_list_file.txt deleted file mode 100644 index 45b8b70828f..00000000000 --- a/core/src/test/resources/test_significantly_mutated_gene_list_file.txt +++ /dev/null @@ -1,4 +0,0 @@ -53 -99 -3 -777 \ No newline at end of file diff --git a/core/src/test/resources/test_somatic_white_list_file1.txt b/core/src/test/resources/test_somatic_white_list_file1.txt deleted file mode 100644 index 1c0887db287..00000000000 --- a/core/src/test/resources/test_somatic_white_list_file1.txt +++ /dev/null @@ -1,4 +0,0 @@ -ONE -FOUR -FOO -TWELVE diff --git a/core/src/test/resources/test_somatic_white_list_file2.txt b/core/src/test/resources/test_somatic_white_list_file2.txt deleted file mode 100644 index 9a5e9842354..00000000000 --- a/core/src/test/resources/test_somatic_white_list_file2.txt +++ /dev/null @@ -1,3 +0,0 @@ -FOUR -FOO -SEVENSEVENSEVEN diff --git a/core/src/test/resources/treatments/data_treatment_ic50.txt b/core/src/test/resources/treatments/data_treatment_ic50.txt deleted file mode 100644 index 616f16f1827..00000000000 --- a/core/src/test/resources/treatments/data_treatment_ic50.txt +++ /dev/null @@ -1,11 +0,0 @@ -ENTITY_STABLE_ID NAME DESCRIPTION URL -17-AAG Name of 17-AAG Desc of 17-AAG Url of 17-AAG -AEW541 Name of AEW541 Desc of AEW541 Url of AEW541 -AZD0530 Name of AZD0530 Desc of AZD0530 Url of AZD0530 -AZD6244 Name of AZD6244 Desc of AZD6244 Url of AZD6244 -Erlotinib Name of Erlotinib Desc of Erlotinib Url of Erlotinib -Irinotecan Name of Irinotecan Desc of Irinotecan Url of Irinotecan -L-685458 Name of L-685458 Desc of L-685458 Url of L-685458 -Lapatinib Name of Lapatinib Desc of Lapatinib Url of Lapatinib -LBW242 Name of LBW242 Desc of LBW242 Url of LBW242 -Nilotinib Name of Nilotinib Desc of Nilotinib Url of Nilotinib diff --git a/core/src/test/resources/treatments/data_treatment_ic50_newdesc.txt b/core/src/test/resources/treatments/data_treatment_ic50_newdesc.txt deleted file mode 100644 index 4eb805bddeb..00000000000 --- a/core/src/test/resources/treatments/data_treatment_ic50_newdesc.txt +++ /dev/null @@ -1,11 +0,0 @@ -ENTITY_STABLE_ID NAME DESCRIPTION URL -17-AAG Name of 17-AAG New New desc of 17-AAG Url of 17-AAG -AEW541 Name of AEW541 New desc of AEW541 Url of AEW541 -AZD0530 Name of AZD0530 New desc of AZD0530 Url of AZD0530 -AZD6244 Name of AZD6244 New desc of AZD6244 Url of AZD6244 -Erlotinib Name of Erlotinib New desc of Erlotinib Url of Erlotinib -Irinotecan Name of Irinotecan New desc of Irinotecan Url of Irinotecan -L-685458 Name of L-685458 New desc of L-685458 Url of L-685458 -Lapatinib Name of Lapatinib New desc of Lapatinib Url of Lapatinib -LBW242 Name of LBW242 New desc of LBW242 Url of LBW242 -Nilotinib Name of Nilotinib New desc of Nilotinib Url of Nilotinib \ No newline at end of file diff --git a/core/src/test/scripts/system_tests_validate_data.py b/core/src/test/scripts/system_tests_validate_data.py deleted file mode 100755 index ff5385c5692..00000000000 --- a/core/src/test/scripts/system_tests_validate_data.py +++ /dev/null @@ -1,264 +0,0 @@ -#!/usr/bin/env python3 - -''' -Copyright (c) 2016 The Hyve B.V. -This code is licensed under the GNU Affero General Public License (AGPL), -version 3, or (at your option) any later version. -''' - -import unittest -import logging -import tempfile -import os -import shutil -import time -import difflib - -from importer import validateData - -try: - WindowsError -except NameError: - WindowsError = None - -# globals: -PORTAL_INFO_DIR = 'test_data/api_json_system_tests' - -class ValidateDataSystemTester(unittest.TestCase): - '''Test cases around running the complete validateData script - - (such as "does it return the correct exit status?" or "does it generate - the html report when requested?", etc) - ''' - - def setUp(self): - _resetClassVars() - - # Prepare global variables related to sample profiled for mutations and gene panels - self.mutation_sample_ids = None - self.mutation_file_sample_ids = set() - self.fusion_file_sample_ids = set() - - def tearDown(self): - """Close logging handlers after running validator and remove tmpdir.""" - # restore original function - validateData.mutation_sample_ids = None - validateData.mutation_file_sample_ids = set() - validateData.fusion_file_sample_ids = set() - - # get the logger used in validateData.main_validate() - validator_logger = logging.getLogger(validateData.__name__) - # flush and close all handlers of this logger - for logging_handler in validator_logger.handlers: - logging_handler.close() - # remove the handlers from the logger to reset it - validator_logger.handlers = [] - super(ValidateDataSystemTester, self).tearDown() - - def assertFileGenerated(self, tmp_file_name, expected_file_name): - """Assert that a file has been generated with the expected contents.""" - self.assertTrue(os.path.exists(tmp_file_name)) - with open(tmp_file_name, 'r') as out_file, \ - open(expected_file_name, 'r') as ref_file: - base_filename = os.path.basename(tmp_file_name) - diff_result = difflib.context_diff( - ref_file.readlines(), - out_file.readlines(), - fromfile='Expected {}'.format(base_filename), - tofile='Generated {}'.format(base_filename)) - diff_line_list = list(diff_result) - self.assertEqual(diff_line_list, [], - msg='\n' + ''.join(diff_line_list)) - # remove temp file if all is fine: - try: - os.remove(tmp_file_name) - except WindowsError: - # ignore this Windows specific error...probably happens because of virus scanners scanning the temp file... - pass - - def test_exit_status_success(self): - '''study 0 : no errors, expected exit_status = 0. - - If there are errors, the script should return - 0: 'succeeded', - 1: 'failed', - 2: 'not performed as problems occurred', - 3: 'succeeded with warnings' - ''' - - # build up the argument list - print("===study 0") - args = ['--study_directory', 'test_data/study_es_0/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v'] - # execute main function with arguments provided as if from sys.argv - args = validateData.interface(args) - exit_status = validateData.main_validate(args) - self.assertEqual(0, exit_status) - - def test_exit_status_failure(self): - '''study 1 : errors, expected exit_status = 1.''' - #Build up arguments and run - print("===study 1") - args = ['--study_directory', 'test_data/study_es_1/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v'] - args = validateData.interface(args) - # Execute main function with arguments provided through sys.argv - exit_status = validateData.main_validate(args) - self.assertEqual(1, exit_status) - - @unittest.SkipTest - # FIXME Study test_data/study_es_invalid does not exist - def test_exit_status_invalid(self): - '''test to fail: give wrong hugo file, or let a meta file point to a non-existing data file, expected exit_status = 2.''' - #Build up arguments and run - print("===study invalid") - args = ['--study_directory', 'test_data/study_es_invalid/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v'] - args = validateData.interface(args) - # Execute main function with arguments provided through sys.argv - exit_status = validateData.main_validate(args) - self.assertEqual(2, exit_status) - - def test_exit_status_warnings(self): - '''study 3 : warnings only, expected exit_status = 3.''' - # data_filename: test - #Build up arguments and run - print("===study 3") - args = ['--study_directory', 'test_data/study_es_3/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v'] - args = validateData.interface(args) - # Execute main function with arguments provided through sys.argv - exit_status = validateData.main_validate(args) - self.assertEqual(3, exit_status) - - def test_html_output(self): - ''' - Test if html file is correctly generated when 'html_table' is given - ''' - #Build up arguments and run - out_file_name = 'test_data/study_es_0/result_report.html~' - args = ['--study_directory', 'test_data/study_es_0/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v', - '--html_table', out_file_name] - args = validateData.interface(args) - # Execute main function with arguments provided through sys.argv - exit_status = validateData.main_validate(args) - self.assertEqual(0, exit_status) - self.assertFileGenerated(out_file_name, - 'test_data/study_es_0/result_report.html') - - def test_portal_mismatch(self): - '''Test if validation fails when data contradicts the portal.''' - # build up arguments and run - argv = ['--study_directory', 'test_data/study_portal_mismatch', - '--portal_info_dir', PORTAL_INFO_DIR, '--verbose'] - parsed_args = validateData.interface(argv) - exit_status = validateData.main_validate(parsed_args) - # flush logging handlers used in validateData - validator_logger = logging.getLogger(validateData.__name__) - for logging_handler in validator_logger.handlers: - logging_handler.flush() - # expecting only warnings (about the skipped checks), no errors - self.assertEqual(exit_status, 1) - - def test_no_portal_checks(self): - '''Test if validation skips portal-specific checks when instructed.''' - # build up arguments and run - argv = ['--study_directory', 'test_data/study_portal_mismatch', - '--verbose', - '--no_portal_checks'] - parsed_args = validateData.interface(argv) - exit_status = validateData.main_validate(parsed_args) - # flush logging handlers used in validateData - validator_logger = logging.getLogger(validateData.__name__) - for logging_handler in validator_logger.handlers: - logging_handler.flush() - # expecting only warnings (about the skipped checks), no errors - self.assertEqual(exit_status, 3) - - def test_problem_in_clinical(self): - '''Test whether the script aborts if the sample file cannot be parsed. - - Further files cannot be validated in this case, as all sample IDs will - be undefined. Validate if the script is giving the proper error. - ''' - # build the argument list - out_file_name = 'test_data/study_wr_clin/result_report.html~' - print('==test_problem_in_clinical==') - args = ['--study_directory', 'test_data/study_wr_clin/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v', - '--html_table', out_file_name] - # execute main function with arguments provided as if from sys.argv - args = validateData.interface(args) - exit_status = validateData.main_validate(args) - self.assertEqual(1, exit_status) - # TODO - set logger in main_validate and read out buffer here to assert on nr of errors - self.assertFileGenerated(out_file_name, - 'test_data/study_wr_clin/result_report.html') - - def test_various_issues(self): - '''Test if output is generated for a mix of errors and warnings. - - This includes HTML ouput, the error line file and the exit status. - ''' - # build the argument list - html_file_name = 'test_data/study_various_issues/result_report.html~' - error_file_name = 'test_data/study_various_issues/error_file.txt~' - args = ['--study_directory', 'test_data/study_various_issues/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v', - '--html_table', html_file_name, - '--error_file', error_file_name] - args = validateData.interface(args) - # execute main function with arguments provided through sys.argv - exit_status = validateData.main_validate(args) - # flush logging handlers used in validateData - validator_logger = logging.getLogger(validateData.__name__) - for logging_handler in validator_logger.handlers: - logging_handler.flush() - # should fail because of various errors in addition to warnings - self.assertEqual(1, exit_status) - # In MAF files (mutation data) there is a column called - # "Matched_Norm_Sample_Barcode". The respective metadata file supports - # giving a list of sample codes against which this column is validated. - # This and other errors are expected in these output files. - self.assertFileGenerated( - html_file_name, - 'test_data/study_various_issues/result_report.html') - self.assertFileGenerated( - error_file_name, - 'test_data/study_various_issues/error_file.txt') - - def test_files_with_quotes(self): - ''' - Tests the scenario where data files contain quotes. This should give errors. - ''' - #Build up arguments and run - out_file_name = 'test_data/study_quotes/result_report.html~' - print('==test_files_with_quotes==') - args = ['--study_directory', 'test_data/study_quotes/', - '--portal_info_dir', PORTAL_INFO_DIR, '-v', - '--html_table', out_file_name] - args = validateData.interface(args) - # Execute main function with arguments provided through sys.argv - exit_status = validateData.main_validate(args) - # should fail because of errors with quotes - self.assertEqual(1, exit_status) - self.assertFileGenerated(out_file_name, - 'test_data/study_quotes/result_report.html') - -def _resetClassVars(): - """Reset the state of classes that check mulitple files of the same type. - - GsvaWiseFileValidator classes check - consistency between multiple data files by collecting information in class variables. - This implementation is not consistent with the unit test environment that simulates - different studies to be loaded. To ensure real-world fucntionality the class variables - should be reset before each unit test that tests multi file consistency.""" - - for c in [ validateData.GsvaWiseFileValidator ]: - c.prior_validated_sample_ids = None - c.prior_validated_feature_ids = None - c.prior_validated_header = None - -if __name__ == '__main__': - unittest.main(buffer=True) diff --git a/core/src/test/scripts/system_tests_validate_studies.py b/core/src/test/scripts/system_tests_validate_studies.py deleted file mode 100755 index 714754ac8dd..00000000000 --- a/core/src/test/scripts/system_tests_validate_studies.py +++ /dev/null @@ -1,215 +0,0 @@ -#!/usr/bin/env python3 - -""" -Copyright (c) 2018 The Hyve B.V. -This code is licensed under the GNU Affero General Public License (AGPL), -version 3, or (at your option) any later version. -""" - -import unittest -import sys -import os -import glob -from contextlib import contextmanager -from io import StringIO -import logging.handlers -import tempfile -import shutil - -from importer import validateStudies, cbioportal_common - - -# globals: -PORTAL_INFO_DIR = 'test_data/api_json_system_tests' - - -# FIXME: replace by contextlib.redirect_stdout when moving to Python 3.4+ -@contextmanager -def redirect_stdout(new_target): - """Temporarily re-bind sys.stdout to a different file-like object.""" - old_target = sys.stdout - sys.stdout = new_target - try: - yield - finally: - sys.stdout = old_target - - -# FIXME: replace by tempfile.TemporaryDirectory when moving to Python 3.2+ -@contextmanager -def TemporaryDirectory(): - """Create a temporary directory and remove it after use.""" - path = tempfile.mkdtemp() - try: - yield path - finally: - shutil.rmtree(path) - - -class ValidateStudiesSystemTester(unittest.TestCase): - """Test cases around running the validateStudies script - - (such as "does it return the correct exit status?") - """ - - def test_exit_status_success(self): - """study 0 : no errors, expected exit_status = 0. - - Possible exit statuses: - 0: 'VALID', - 1: 'INVALID' - """ - - # Build up arguments and run - print("===study 0") - args = ['--list-of-studies', 'test_data/study_es_0/', - '--portal_info_dir', PORTAL_INFO_DIR] - args = validateStudies.interface(args) - exit_status = validateStudies.main(args) - self.assertEqual(0, exit_status) - - def test_exit_status_success_for_legacy_cna_discrete(self): - """study 0 : no errors, expected exit_status = 0. - - Possible exit statuses: - 0: 'VALID', - 1: 'INVALID' - """ - - # Build up arguments and run - print("===study 0 legacy") - args = ['--list-of-studies', 'test_data/study_es_0_legacy_cna_discrete/', - '--portal_info_dir', PORTAL_INFO_DIR] - args = validateStudies.interface(args) - exit_status = validateStudies.main(args) - self.assertEqual(0, exit_status) - - def test_exit_status_failure(self): - """study 1 : errors, expected exit_status = 1.""" - - # Build up arguments and run - print("===study 1") - args = ['--list-of-studies', 'test_data/study_es_1/', - '--portal_info_dir', PORTAL_INFO_DIR] - args = validateStudies.interface(args) - exit_status = validateStudies.main(args) - self.assertEqual(1, exit_status) - - @unittest.skip("Study test_data/study_es_invalid is not implemented") - def test_exit_status_invalid(self): - """test to fail: study directory not existing, so cannot run validation, expected exit_status = 1.""" - - # Build up arguments and run - print("===study invalid") - args = ['--list-of-studies', 'test_data/study_es_invalid/', - '--portal_info_dir', PORTAL_INFO_DIR] - args = validateStudies.interface(args) - exit_status = validateStudies.main(args) - self.assertEqual(1, exit_status) - - def test_exit_status_warnings(self): - """study 3 : warnings only, expected exit_status = 0.""" - - # Build up arguments and run - print("===study 3") - args = ['--list-of-studies', 'test_data/study_es_3/', - '--portal_info_dir', PORTAL_INFO_DIR] - args = validateStudies.interface(args) - exit_status = validateStudies.main(args) - self.assertEqual(0, exit_status) - - def test_exit_status_multiple_studies(self): - """Running validateStudies for four studies tested above, expected exit_status = 1.""" - - # Build up arguments and run - print("===study0,1,invalid,3") - args = ['--root-directory', 'test_data', - '--list-of-studies', 'study_es_0,study_es_1,study_es_invalid,study_es_3', - '--portal_info_dir', PORTAL_INFO_DIR] - args = validateStudies.interface(args) - exit_status = validateStudies.main(args) - self.assertEqual(1, exit_status) - - def test_logs_study_label_before_validation_messages(self): - """The log file should start with a line describing the study. - - A subsequent study should have its own header line. - """ - # given - with TemporaryDirectory() as out_dir_path: - args = [ - '--root-directory', 'test_data', - '--list-of-studies', 'study_various_issues,study_es_0', - '--portal_info_dir', PORTAL_INFO_DIR, - '--html-folder', out_dir_path - ] - # when - with redirect_stdout(StringIO()): - parsed_args = validateStudies.interface(args) - validateStudies.main(parsed_args) - # then - log_file_path = glob.glob(os.path.join(out_dir_path, 'log*.txt'))[0] - with open(log_file_path) as log_file: - log_file_lines = log_file.readlines() - self.assertIn('study_various_issues', log_file_lines[0]) - last_line_of_first_study = next( - index - for index, line - in enumerate(log_file_lines) - if 'Validation complete' in line) - self.assertIn( - 'study_es_0', - log_file_lines[last_line_of_first_study + 1]) - - -class ValidateStudiesWithEagerlyFlushingCollapser(unittest.TestCase): - """Test validation with the collapser flushing due to buffer capacity. - - When validating very large studies, it will flush partway through a study. - This can be simulated with a smaller study by lowering the buffer capacity. - """ - - def setUp(self): - """Make the collapsing log message handler flush more eagerly.""" - class EagerFlusher(logging.handlers.MemoryHandler): - def __init__(self, *args, **kwargs): - """Set the buffer capacity to 3 regardless of args.""" - # leave out any capacity argument from args and kwargs - args = args[1:] - kwargs = {k: v for k, v in list(kwargs.items()) if k != 'capacity'} - # pass 3 as the capacity argument - super(EagerFlusher, self).__init__(3, *args, **kwargs) - class EagerFlushingCollapser( - cbioportal_common.CollapsingLogMessageHandler, - EagerFlusher): - """CollapsingLogMessageHandler with EagerFlusher overrides.""" - pass - self.original_collapser = cbioportal_common.CollapsingLogMessageHandler - cbioportal_common.CollapsingLogMessageHandler = EagerFlusher - - def tearDown(self): - """Restore the unmodified collapsing log message handler.""" - cbioportal_common.CollapsingLogMessageHandler = self.original_collapser - - def test_leaves_stdout_uncluttered_if_validation_produces_errors(self): - """Test flushing the collapsing logger halfway through a study. - - This should not spill the validation messages to stdout as it previously - did, even crashing with a KeyError sometimes because non-validator - log messages got flushed into the collapsing logic. - """ - output_stream = StringIO() - with redirect_stdout(output_stream): - args = validateStudies.interface([ - '--root-directory', 'test_data', - '--list-of-studies', 'study_various_issues/', - '--portal_info_dir', PORTAL_INFO_DIR]) - validateStudies.main(args) - self.assertNotIn( - 'ERROR', - output_stream.getvalue(), - 'The validation errors should not be printed to the console.') - - -if __name__ == '__main__': - unittest.main(buffer=True) diff --git a/core/src/test/scripts/test_data/api_json_system_tests/cancer-types.json b/core/src/test/scripts/test_data/api_json_system_tests/cancer-types.json deleted file mode 100644 index 8206d90a2a9..00000000000 --- a/core/src/test/scripts/test_data/api_json_system_tests/cancer-types.json +++ /dev/null @@ -1,2 +0,0 @@ -[{"cancerTypeId":"brca-es0","name":"Breast Invasive Carcinoma","color":"HotPink"}, -{"cancerTypeId":"mychs","name":"MyxocancerTypeId Chondrosarcoma","color":"White"},{"cancerTypeId":"unec","name":"Uterine Neuroendocrine Carcinoma","color":"PeachPuff"},{"cancerTypeId":"tcca","name":"Choriocarcinoma","color":"Red"},{"cancerTypeId":"ptpr","name":"Papillary Tumor of the Pineal Region","color":"Gray"},{"cancerTypeId":"biliary_tract","name":"Biliary Tract","color":"Green"},{"cancerTypeId":"ustad","name":"Undifferentiated Stomach Adenocarcinoma","color":"LightSkyBlue"},{"cancerTypeId":"uccc","name":"Uterine Clear Cell Carcinoma","color":"PeachPuff"},{"cancerTypeId":"breast","name":"Breast","color":"HotPink"},{"cancerTypeId":"ucca","name":"Choriocarcinoma","color":"PeachPuff"},{"cancerTypeId":"ansc","name":"Anal Squamous Cell Carcinoma","color":"SaddleBrown"},{"cancerTypeId":"hccihch","name":"Hepatocellular Carcinoma plus Intrahepatic Cholangiocarcinoma","color":"MediumSeaGreen"},{"cancerTypeId":"sbmov","name":"Serous Borderline Ovarian Tumor, Micropapillary","color":"LightBlue"},{"cancerTypeId":"lihb","name":"Hepatoblastoma","color":"MediumSeaGreen"},{"cancerTypeId":"acrm","name":"Acral Melanoma","color":"Black"},{"cancerTypeId":"blad","name":"Bladder Adenocarcinoma","color":"Yellow"},{"cancerTypeId":"ogct","name":"Ovarian Germ Cell Tumor","color":"LightBlue"},{"cancerTypeId":"istad","name":"Intestinal Type Stomach Adenocarcinoma","color":"LightSkyBlue"},{"cancerTypeId":"gist","name":"Gastrointestinal Stromal Tumor","color":"LightYellow"},{"cancerTypeId":"df","name":"Dermatofibroma","color":"Black"},{"cancerTypeId":"ilc","name":"Breast Invasive Lobular Carcinoma","color":"HotPink"},{"cancerTypeId":"dlbcl","name":"Diffuse Large B-Cell Lymphoma","color":"LimeGreen"},{"cancerTypeId":"poro","name":"Poroma/Acrospiroma","color":"Black"},{"cancerTypeId":"umec","name":"Uterine Mixed Endometrial Carcinoma","color":"PeachPuff"},{"cancerTypeId":"gctb","name":"Giant Cell Tumor of Bone","color":"White"},{"cancerTypeId":"stsc","name":"Small Cell Carcinoma of the Stomach","color":"LightSkyBlue"},{"cancerTypeId":"mrls","name":"MyxocancerTypeId/Round-Cell Liposarcoma","color":"LightYellow"},{"cancerTypeId":"gej","name":"Adenocarcinoma of the Gastroesophageal Junction","color":"LightSkyBlue"},{"cancerTypeId":"imt","name":"Inflammatory Myofibroblastic Tumor","color":"LightYellow"},{"cancerTypeId":"ebov","name":"EndometriocancerTypeId Borderlin Ovarian Tumor","color":"LightBlue"},{"cancerTypeId":"nsgct","name":"Non-Seminomatous Germ Cell Tumor","color":"Red"},{"cancerTypeId":"es","name":"Ewing Sarcoma","color":"White"},{"cancerTypeId":"uterine sarcoma","name":"Uterine Sarcoma","color":"PeachPuff"},{"cancerTypeId":"thyc","name":"Thymic Carcinoma","color":"Purple"},{"cancerTypeId":"osos","name":"Osteoblastic Osteosarcoma","color":"White"},{"cancerTypeId":"gb","name":"Glioblastoma","color":"Gray"},{"cancerTypeId":"mlym","name":"Malignant 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"hugoGeneSymbol":"RHOC"}, -{"entrezGeneId":487, "hugoGeneSymbol":"ATP2A1"}, -{"entrezGeneId":3232, "hugoGeneSymbol":"HOXD3"}, -{"entrezGeneId":3613, "hugoGeneSymbol":"IMPA2"}, -{"entrezGeneId":7871, "hugoGeneSymbol":"SLMAP"}, -{"entrezGeneId":8148, "hugoGeneSymbol":"TAF15"}, -{"entrezGeneId":24145, "hugoGeneSymbol":"PANX1"}, -{"entrezGeneId":283234, "hugoGeneSymbol":"CCDC88B"} - -] diff --git a/core/src/test/scripts/test_data/api_json_system_tests/genesaliases.json b/core/src/test/scripts/test_data/api_json_system_tests/genesaliases.json deleted file mode 100644 index 39a9f0ed148..00000000000 --- a/core/src/test/scripts/test_data/api_json_system_tests/genesaliases.json +++ /dev/null @@ -1,6 +0,0 @@ -[ -{"_comment": "aliases for gistic data", - "entrezGeneId":"619562", "alias":"SNORA3"}, -{"entrezGeneId":"677823", "alias":"SNORA42"}, -{"entrezGeneId":"7504", "alias":"NA"} -] \ No newline at end of file diff --git a/core/src/test/scripts/test_data/api_json_system_tests/genesets.json b/core/src/test/scripts/test_data/api_json_system_tests/genesets.json deleted file mode 100644 index 1f99eccd9df..00000000000 --- a/core/src/test/scripts/test_data/api_json_system_tests/genesets.json +++ /dev/null @@ -1,101 +0,0 @@ -[ -{"_comment": "genesets for data_genesets.txt", - "genesetId":"GO_ACYLGLYCEROL_HOMEOSTASIS"}, -{"genesetId":"GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS"}, -{"genesetId":"GO_ANTEROGRADE_AXONAL_TRANSPORT"}, -{"genesetId":"GO_APICAL_PROTEIN_LOCALIZATION"}, -{"genesetId":"GO_ATP_DEPENDENT_CHROMATIN_REMODELING"}, -{"genesetId":"GO_CARBOHYDRATE_CATABOLIC_PROCESS"}, -{"genesetId":"GO_CARDIAC_CHAMBER_DEVELOPMENT"}, -{"genesetId":"GO_CARDIAC_MUSCLE_ADAPTATION"}, -{"genesetId":"GO_CELLULAR_RESPONSE_TO_LIPOPROTEIN_PARTICLE_STIMULUS"}, -{"genesetId":"GO_CERAMIDE_CATABOLIC_PROCESS"}, -{"genesetId":"GO_CEREBRAL_CORTEX_RADIAL_GLIA_GUIDED_MIGRATION"}, -{"genesetId":"GO_CHROMOSOME_ORGANIZATION"}, -{"genesetId":"GO_CHROMOSOME_SEGREGATION"}, -{"genesetId":"GO_CIRCADIAN_RHYTHM"}, -{"genesetId":"GO_CYTOKINE_METABOLIC_PROCESS"}, -{"genesetId":"GO_CYTOPLASMIC_TRANSLATION"}, -{"genesetId":"GO_DENDRITE_DEVELOPMENT"}, -{"genesetId":"GO_DENTATE_GYRUS_DEVELOPMENT"}, -{"genesetId":"GO_DETECTION_OF_LIGHT_STIMULUS_INVOLVED_IN_VISUAL_PERCEPTION"}, -{"genesetId":"GO_DIGESTION"}, -{"genesetId":"GO_DNA_DEPENDENT_DNA_REPLICATION_MAINTENANCE_OF_FIDELITY"}, -{"genesetId":"GO_ENDOTHELIAL_CELL_DEVELOPMENT"}, -{"genesetId":"GO_ESTABLISHMENT_OF_SPINDLE_ORIENTATION"}, -{"genesetId":"GO_ESTABLISHMENT_OR_MAINTENANCE_OF_TRANSMEMBRANE_ELECTROCHEMICAL_GRADIENT"}, -{"genesetId":"GO_ETHER_METABOLIC_PROCESS"}, -{"genesetId":"GO_EXCRETION"}, -{"genesetId":"GO_FOREBRAIN_NEURON_DEVELOPMENT"}, -{"genesetId":"GO_G_PROTEIN_COUPLED_RECEPTOR_INTERNALIZATION"}, -{"genesetId":"GO_GLUCURONATE_METABOLIC_PROCESS"}, -{"genesetId":"GO_GLYCERALDEHYDE_3_PHOSPHATE_METABOLIC_PROCESS"}, -{"genesetId":"GO_HEMATOPOIETIC_PROGENITOR_CELL_DIFFERENTIATION"}, -{"genesetId":"GO_HEMOGLOBIN_METABOLIC_PROCESS"}, -{"genesetId":"GO_HINDBRAIN_DEVELOPMENT"}, -{"genesetId":"GO_ION_TRANSPORT"}, -{"genesetId":"GO_L_PHENYLALANINE_METABOLIC_PROCESS"}, -{"genesetId":"GO_LABYRINTHINE_LAYER_DEVELOPMENT"}, -{"genesetId":"GO_LACTATE_TRANSPORT"}, -{"genesetId":"GO_LEUKOCYTE_ACTIVATION"}, -{"genesetId":"GO_LIPID_MODIFICATION"}, -{"genesetId":"GO_MEIOTIC_CHROMOSOME_SEGREGATION"}, -{"genesetId":"GO_MEMORY"}, -{"genesetId":"GO_METANEPHRIC_NEPHRON_MORPHOGENESIS"}, -{"genesetId":"GO_MITOTIC_CYTOKINESIS"}, -{"genesetId":"GO_MODULATION_OF_GROWTH_OF_SYMBIONT_INVOLVED_IN_INTERACTION_WITH_HOST"}, -{"genesetId":"GO_MOVEMENT_IN_ENVIRONMENT_OF_OTHER_ORGANISM_INVOLVED_IN_SYMBIOTIC_INTERACTION"}, -{"genesetId":"GO_MULTICELLULAR_ORGANISM_AGING"}, -{"genesetId":"GO_N_TERMINAL_PROTEIN_AMINO_ACID_ACETYLATION"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_CYCLIN_DEPENDENT_PROTEIN_KINASE_ACTIVITY"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_DENDRITIC_SPINE_DEVELOPMENT"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_ERK1_AND_ERK2_CASCADE"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_KIDNEY_DEVELOPMENT"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_MAP_KINASE_ACTIVITY"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_PHOSPHOPROTEIN_PHOSPHATASE_ACTIVITY"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_PROTEIN_COMPLEX_ASSEMBLY"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS"}, -{"genesetId":"GO_NEGATIVE_REGULATION_OF_TRANSCRIPTION_FACTOR_IMPORT_INTO_NUCLEUS"}, -{"genesetId":"GO_NEUROLOGICAL_SYSTEM_PROCESS"}, -{"genesetId":"GO_NEUROMUSCULAR_JUNCTION_DEVELOPMENT"}, -{"genesetId":"GO_NEURON_DEVELOPMENT"}, -{"genesetId":"GO_NEURONAL_STEM_CELL_DIVISION"}, -{"genesetId":"GO_OLIGOSACCHARIDE_METABOLIC_PROCESS"}, -{"genesetId":"GO_PHENOL_CONTAINING_COMPOUND_METABOLIC_PROCESS"}, -{"genesetId":"GO_PHOSPHATIDYLSERINE_ACYL_CHAIN_REMODELING"}, -{"genesetId":"GO_PLATELET_DERIVED_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_CALCIUM_ION_TRANSPORT"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_EPITHELIAL_CELL_DIFFERENTIATION"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_KINASE_ACTIVITY"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_MITOTIC_NUCLEAR_DIVISION"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_MYOTUBE_DIFFERENTIATION"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_PROTEIN_MATURATION"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_SYNAPTIC_TRANSMISSION_GLUTAMATERGIC"}, -{"genesetId":"GO_POSITIVE_REGULATION_OF_VIRAL_TRANSCRIPTION"}, -{"genesetId":"GO_POTASSIUM_ION_TRANSPORT"}, -{"genesetId":"GO_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY"}, -{"genesetId":"GO_REGULATION_OF_B_CELL_RECEPTOR_SIGNALING_PATHWAY"}, -{"genesetId":"GO_REGULATION_OF_CELL_ACTIVATION"}, -{"genesetId":"GO_REGULATION_OF_DOPAMINE_METABOLIC_PROCESS"}, -{"genesetId":"GO_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR"}, -{"genesetId":"GO_REGULATION_OF_ESTABLISHMENT_OF_PLANAR_POLARITY"}, -{"genesetId":"GO_REGULATION_OF_G_PROTEIN_COUPLED_RECEPTOR_PROTEIN_SIGNALING_PATHWAY"}, -{"genesetId":"GO_REGULATION_OF_GENE_SILENCING_BY_RNA"}, -{"genesetId":"GO_REGULATION_OF_GOLGI_ORGANIZATION"}, -{"genesetId":"GO_REGULATION_OF_HEPATOCYTE_PROLIFERATION"}, -{"genesetId":"GO_REGULATION_OF_MITOCHONDRIAL_DEPOLARIZATION"}, -{"genesetId":"GO_REGULATION_OF_NLRP3_INFLAMMASOME_COMPLEX_ASSEMBLY"}, -{"genesetId":"GO_REGULATION_OF_PROTEIN_TARGETING_TO_MITOCHONDRION"}, -{"genesetId":"GO_REGULATION_OF_RESPIRATORY_BURST"}, -{"genesetId":"GO_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY"}, -{"genesetId":"GO_RESPONSE_TO_UV_C"}, -{"genesetId":"GO_RNA_DEPENDENT_DNA_BIOSYNTHETIC_PROCESS"}, -{"genesetId":"GO_SINGLE_FERTILIZATION"}, -{"genesetId":"GO_SMAD_PROTEIN_SIGNAL_TRANSDUCTION"}, -{"genesetId":"GO_SPINAL_CORD_DEVELOPMENT"}, -{"genesetId":"GO_STEROID_BIOSYNTHETIC_PROCESS"}, -{"genesetId":"GO_STRESS_FIBER_ASSEMBLY"}, -{"genesetId":"GO_SYNAPTIC_VESICLE_LOCALIZATION"}, -{"genesetId":"GO_TRNA_AMINOACYLATION"} -] diff --git a/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json b/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json deleted file mode 100644 index 204c3d72556..00000000000 --- a/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json +++ /dev/null @@ -1 +0,0 @@ -["msigdb_7.5.1"] \ No newline at end of file diff --git a/core/src/test/scripts/test_data/api_json_unit_tests/cancer-types.json b/core/src/test/scripts/test_data/api_json_unit_tests/cancer-types.json deleted file mode 100644 index 6d8c81ea16c..00000000000 --- a/core/src/test/scripts/test_data/api_json_unit_tests/cancer-types.json +++ /dev/null @@ -1,7 +0,0 @@ -[ -{"cancerTypeId":"breast","name":"Breast","color":"HotPink"}, -{"cancerTypeId":"prostate","name":"Prostate","color":"Cyan"}, -{"cancerTypeId":"lung","name":"Lung","color":"Gainsboro"}, -{"cancerTypeId":"brca","name":"Invasive Breast Carcinoma","color":"HotPink"}, -{"cancerTypeId":"prad","name":"Prostate Adenocarcinoma","color":"Cyan"} -] diff --git a/core/src/test/scripts/test_data/api_json_unit_tests/gene-panels.json b/core/src/test/scripts/test_data/api_json_unit_tests/gene-panels.json deleted file mode 100644 index 37e241daa79..00000000000 --- a/core/src/test/scripts/test_data/api_json_unit_tests/gene-panels.json +++ /dev/null @@ -1,4 +0,0 @@ -[ -{"genes":[{"entrezGeneId": 3983,"hugoGeneSymbol":"ABLIM1"},{"entrezGeneId": 80070,"hugoGeneSymbol":"ADAMTS20"},{"entrezGeneId": 460,"hugoGeneSymbol":"ASTN1"},{"entrezGeneId": 80114,"hugoGeneSymbol":"BICC1"},{"entrezGeneId": 253559,"hugoGeneSymbol":"CADM2"},{"entrezGeneId": 51806,"hugoGeneSymbol":"CALML5"},{"entrezGeneId": 56267,"hugoGeneSymbol":"CCBL2"},{"entrezGeneId": 63967,"hugoGeneSymbol":"CLSPN"},{"entrezGeneId": 114784,"hugoGeneSymbol":"CSMD2"},{"entrezGeneId": 9231,"hugoGeneSymbol":"DLG5"},{"entrezGeneId": 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diff --git a/core/src/test/scripts/test_data/api_json_unit_tests/genesaliases.json b/core/src/test/scripts/test_data/api_json_unit_tests/genesaliases.json deleted file mode 100644 index 3350f010480..00000000000 --- a/core/src/test/scripts/test_data/api_json_unit_tests/genesaliases.json +++ /dev/null @@ -1 +0,0 @@ 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\ No newline at end of file diff --git a/core/src/test/scripts/test_data/api_json_unit_tests/genesets.json b/core/src/test/scripts/test_data/api_json_unit_tests/genesets.json deleted file mode 100644 index c283f00312a..00000000000 --- a/core/src/test/scripts/test_data/api_json_unit_tests/genesets.json +++ /dev/null @@ -1,11 +0,0 @@ -[ -{"_comment": "genesets for data_genesets.txt", - "genesetId":"GO_ACYLGLYCEROL_HOMEOSTASIS"}, -{"genesetId":"GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS"}, -{"genesetId":"GO_ANTEROGRADE_AXONAL_TRANSPORT"}, -{"genesetId":"GO_APICAL_PROTEIN_LOCALIZATION"}, -{"genesetId":"GO_ATP_DEPENDENT_CHROMATIN_REMODELING"}, -{"genesetId":"GO_CARBOHYDRATE_CATABOLIC_PROCESS"}, -{"genesetId":"GO_CARDIAC_CHAMBER_DEVELOPMENT"}, -{"genesetId":"GO_CARDIAC_MUSCLE_ADAPTATION"} -] diff --git a/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json b/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json deleted file mode 100644 index 204c3d72556..00000000000 --- a/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json +++ /dev/null @@ -1 +0,0 @@ -["msigdb_7.5.1"] \ No newline at end of file diff --git a/core/src/test/scripts/test_data/case_lists_duplicate_category/cases_test1.txt b/core/src/test/scripts/test_data/case_lists_duplicate_category/cases_test1.txt deleted file mode 100644 index 69546c91729..00000000000 --- a/core/src/test/scripts/test_data/case_lists_duplicate_category/cases_test1.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_mrna1 -case_list_name: All Tumors 1 -case_list_description: All tumor samples (825 samples) 1 -case_list_category: all_cases_with_mrna_rnaseq_data -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 TCGA-BH-A18H-01 TCGA-C8-A138-01 TCGA-A2-A0EY-01 TCGA-A8-A08G-01 diff --git a/core/src/test/scripts/test_data/case_lists_duplicate_category/cases_test2.txt b/core/src/test/scripts/test_data/case_lists_duplicate_category/cases_test2.txt deleted file mode 100644 index c4096c5bb6c..00000000000 --- a/core/src/test/scripts/test_data/case_lists_duplicate_category/cases_test2.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_mrna2 -case_list_name: All Tumors 2 -case_list_description: All tumor samples (825 samples) 2 -case_list_category: all_cases_with_mrna_rnaseq_data -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 TCGA-BH-A18H-01 TCGA-C8-A138-01 TCGA-A2-A0EY-01 TCGA-A8-A08G-01 diff --git a/core/src/test/scripts/test_data/case_lists_duplicated/cases_all.txt b/core/src/test/scripts/test_data/case_lists_duplicated/cases_all.txt deleted file mode 100644 index e5043860f19..00000000000 --- a/core/src/test/scripts/test_data/case_lists_duplicated/cases_all.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_all -case_list_name: All Tumors -case_list_description: All tumor samples (825 samples) -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 TCGA-BH-A18H-01 TCGA-C8-A138-01 TCGA-A2-A0EY-01 TCGA-A8-A08G-01 diff --git a/core/src/test/scripts/test_data/case_lists_duplicated/cases_each_and_every.txt b/core/src/test/scripts/test_data/case_lists_duplicated/cases_each_and_every.txt deleted file mode 100644 index e5043860f19..00000000000 --- a/core/src/test/scripts/test_data/case_lists_duplicated/cases_each_and_every.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_all -case_list_name: All Tumors -case_list_description: All tumor samples (825 samples) -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 TCGA-BH-A18H-01 TCGA-C8-A138-01 TCGA-A2-A0EY-01 TCGA-A8-A08G-01 diff --git a/core/src/test/scripts/test_data/case_lists_duplicated_sampleid/cases_all.txt b/core/src/test/scripts/test_data/case_lists_duplicated_sampleid/cases_all.txt deleted file mode 100644 index b13ca507d6a..00000000000 --- a/core/src/test/scripts/test_data/case_lists_duplicated_sampleid/cases_all.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_all -case_list_name: All Tumors -case_list_description: All tumor samples (825 samples) -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 TCGA-BH-A18H-01 TCGA-C8-A138-01 TCGA-A2-A0EY-01 TCGA-A8-A08G-01 diff --git a/core/src/test/scripts/test_data/case_lists_invalid_category/cases_all.txt b/core/src/test/scripts/test_data/case_lists_invalid_category/cases_all.txt deleted file mode 100644 index 7ba3258791d..00000000000 --- a/core/src/test/scripts/test_data/case_lists_invalid_category/cases_all.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_mrna -case_list_name: All Tumors -case_list_description: All tumor samples (825 samples) -case_list_category: all_cases_with_mrna_seq_data -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 TCGA-BH-A18H-01 TCGA-C8-A138-01 TCGA-A2-A0EY-01 TCGA-A8-A08G-01 diff --git a/core/src/test/scripts/test_data/data_cancertype_blank_color_col.txt b/core/src/test/scripts/test_data/data_cancertype_blank_color_col.txt deleted file mode 100644 index cd4adec00bc..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_blank_color_col.txt +++ /dev/null @@ -1 +0,0 @@ -luad Lung Adenocarcinoma Lung diff --git a/core/src/test/scripts/test_data/data_cancertype_confirming_existing.txt b/core/src/test/scripts/test_data/data_cancertype_confirming_existing.txt deleted file mode 100644 index 2067c5e8afc..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_confirming_existing.txt +++ /dev/null @@ -1 +0,0 @@ -brca Invasive Breast Carcinoma HotPink Breast diff --git a/core/src/test/scripts/test_data/data_cancertype_invalid_color.txt b/core/src/test/scripts/test_data/data_cancertype_invalid_color.txt deleted file mode 100644 index d2c2adeffcb..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_invalid_color.txt +++ /dev/null @@ -1 +0,0 @@ -net Neuroendocrine Tumour Zebra tissue diff --git a/core/src/test/scripts/test_data/data_cancertype_lung.txt b/core/src/test/scripts/test_data/data_cancertype_lung.txt deleted file mode 100644 index fd85d7aa3c0..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_lung.txt +++ /dev/null @@ -1 +0,0 @@ -luad Lung Adenocarcinoma Gainsboro Lung diff --git a/core/src/test/scripts/test_data/data_cancertype_lung_twice.txt b/core/src/test/scripts/test_data/data_cancertype_lung_twice.txt deleted file mode 100644 index 46569de3cd1..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_lung_twice.txt +++ /dev/null @@ -1,2 +0,0 @@ -luad Lung Adenocarcinoma Gainsboro Lung -luad Lung Adenocarcinoma AntiqueWhite Lung diff --git a/core/src/test/scripts/test_data/data_cancertype_missing_color_col.txt b/core/src/test/scripts/test_data/data_cancertype_missing_color_col.txt deleted file mode 100644 index bfe093993f5..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_missing_color_col.txt +++ /dev/null @@ -1 +0,0 @@ -luad Lung Adenocarcinoma Lung diff --git a/core/src/test/scripts/test_data/data_cancertype_redefining.txt b/core/src/test/scripts/test_data/data_cancertype_redefining.txt deleted file mode 100644 index 861b56b683f..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_redefining.txt +++ /dev/null @@ -1 +0,0 @@ -brca Breast Cancer HotPink Breast diff --git a/core/src/test/scripts/test_data/data_cancertype_undefined_parent.txt b/core/src/test/scripts/test_data/data_cancertype_undefined_parent.txt deleted file mode 100644 index f65fbdb8c52..00000000000 --- a/core/src/test/scripts/test_data/data_cancertype_undefined_parent.txt +++ /dev/null @@ -1,2 +0,0 @@ -luad Lung Adenocarcinoma Gainsboro Long -new new type PaleGreen tissue diff --git a/core/src/test/scripts/test_data/data_clin_coldefs_banned_attribute.txt b/core/src/test/scripts/test_data/data_clin_coldefs_banned_attribute.txt deleted file mode 100644 index 1c6fe1c687c..00000000000 --- a/core/src/test/scripts/test_data/data_clin_coldefs_banned_attribute.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status Mutation Count -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. Mutation Count in the data instead of calculated in cBioPortal -#STRING NUMBER STRING NUMBER STRING NUMBER -#1 1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS MUTATION_COUNT -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed 2 -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed 3 -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed 100 -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed 1702 -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed 1 -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed 22 -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed 42 -TEST-PAT2 161 1:DECEASED 161 NA 16 diff --git a/core/src/test/scripts/test_data/data_clin_coldefs_correct.txt b/core/src/test/scripts/test_data/data_clin_coldefs_correct.txt deleted file mode 100644 index bc94ced7e29..00000000000 --- a/core/src/test/scripts/test_data/data_clin_coldefs_correct.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. -#STRING NUMBER STRING NUMBER STRING -#1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed -TEST-PAT2 161 1:DECEASED 161 NA diff --git a/core/src/test/scripts/test_data/data_clin_coldefs_hardcoded_attrs.txt b/core/src/test/scripts/test_data/data_clin_coldefs_hardcoded_attrs.txt deleted file mode 100644 index 8e04ec144c3..00000000000 --- a/core/src/test/scripts/test_data/data_clin_coldefs_hardcoded_attrs.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status Other Sample ID Metastatic site -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. Legacy DMP sample identifier (DMPnnnn) Metastatic site -#STRING STRING STRING NUMBER STRING STRING STRING -#1 1 1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS OTHER_SAMPLE_ID METASTATIC_SITE -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed NA neck -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed NA -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed NA -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed NA -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed NA -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed NA -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed NA -TEST-PAT2 161 1:DECEASED 161 NA NA diff --git a/core/src/test/scripts/test_data/data_clin_coldefs_invalid_priority.txt b/core/src/test/scripts/test_data/data_clin_coldefs_invalid_priority.txt deleted file mode 100644 index 8c05e553bde..00000000000 --- a/core/src/test/scripts/test_data/data_clin_coldefs_invalid_priority.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status Eggs -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. Baked beans -#STRING NUMBER STRING NUMBER STRING STRING -#1 1 1 1 1 tomato -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS SAUSAGE -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed Spam -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed Spam -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed Spam -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed Spam -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed Spam -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed Spam -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed Spam -TEST-PAT2 161 1:DECEASED 161 NA Spam diff --git a/core/src/test/scripts/test_data/data_clin_coldefs_lowercase_attribute.txt b/core/src/test/scripts/test_data/data_clin_coldefs_lowercase_attribute.txt deleted file mode 100644 index 430f1eb47bc..00000000000 --- a/core/src/test/scripts/test_data/data_clin_coldefs_lowercase_attribute.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status Eggs -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. Baked beans -#STRING NUMBER STRING NUMBER STRING STRING -#1 1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS Sausage -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed Spam -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed Spam -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed Spam -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed Spam -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed Spam -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed Spam -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed Spam -TEST-PAT2 161 1:DECEASED 161 NA Spam diff --git a/core/src/test/scripts/test_data/data_clin_coldefs_wrong_display_name.txt b/core/src/test/scripts/test_data/data_clin_coldefs_wrong_display_name.txt deleted file mode 100644 index 0d82ffbfe69..00000000000 --- a/core/src/test/scripts/test_data/data_clin_coldefs_wrong_display_name.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Spam Overall Survival Status Disease Free (Months) Disease Free Status -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. -#STRING NUMBER STRING NUMBER STRING -#1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed -TEST-PAT2 161 1:DECEASED 161 NA diff --git a/core/src/test/scripts/test_data/data_clin_date_in_nondate_column.txt b/core/src/test/scripts/test_data/data_clin_date_in_nondate_column.txt deleted file mode 100644 index ddbdfbe847d..00000000000 --- a/core/src/test/scripts/test_data/data_clin_date_in_nondate_column.txt +++ /dev/null @@ -1,12 +0,0 @@ -#Patient Identifier Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) Some Score -#Patient identifier Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment Some Description -#STRING STRING NUMBER STRING NUMBER STRING -#1 1 1 1 1 1 -PATIENT_ID OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS SOME_SCORE -TCGA-A2-A04P 1:Recurred/Progressed [Not Available] 5 -TCGA-A1-A0SK 1:DECEASED 31.77 [Not Available] 31-77 -TCGA-A2-A0CM 1:DECEASED 24.77 1:Recurred/Progressed [Not Available] Jan-14 -TCGA-AR-A1AR 1:DECEASED 17.18 [Not Available] [Not Available] 4-Oct -TCGA-B6-A0WX 1:DECEASED 21.45 1:Recurred/Progressed [Not Available] 21.45 -TCGA-BH-A1F0 1:DECEASED 25.79 1:Recurred/Progressed [Not Available] 25.79 -TCGA-B6-A0I6 1:DECEASED 32.56 1:Recurred/Progressed [Not Available] 32.56 diff --git a/core/src/test/scripts/test_data/data_clin_hardcoded_attr_vals.txt b/core/src/test/scripts/test_data/data_clin_hardcoded_attr_vals.txt deleted file mode 100644 index 92086763efa..00000000000 --- a/core/src/test/scripts/test_data/data_clin_hardcoded_attr_vals.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status Progress Free Survival (Months) Progression Free Status -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. Progress Free Survival (Months) Progression Free Status -#STRING NUMBER STRING NUMBER STRING NUMBER STRING -#1 1 1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS PFS_MONTHS PFS_STATUS -TEST-PAT1 272 0:ALIVE 272 1:Recurred/Progressed 272 1:PROGRESSION -TEST-PAT3 208 0:LIVING 208 0:LIVING 208 0:NO PROGRESSION -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed 60 PROGRESSION -TEST-PAT6 151 0:living 151 1:Recurred/Progressed 151 1:PROGRESSION -TEST-PAT5 290 0:LIVING 290 1:Progressed 290 1:PROGRESSION -TEST-PAT7 88 0:LIVING 88 1:recurred/progressed 88 0:NO PROGRESSION -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed 72 1:PROGRESSION -TEST-PAT2 NA 1:DECEASED 161 NA 161 NA diff --git a/core/src/test/scripts/test_data/data_clin_missing_patient.txt b/core/src/test/scripts/test_data/data_clin_missing_patient.txt deleted file mode 100644 index 9b710fdd7bf..00000000000 --- a/core/src/test/scripts/test_data/data_clin_missing_patient.txt +++ /dev/null @@ -1,12 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. -#STRING NUMBER STRING NUMBER STRING -#1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed -TEST-PAT2 161 1:DECEASED 161 NA diff --git a/core/src/test/scripts/test_data/data_clin_order1.txt b/core/src/test/scripts/test_data/data_clin_order1.txt deleted file mode 100644 index 50f22028c97..00000000000 --- a/core/src/test/scripts/test_data/data_clin_order1.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Cancer Type Cancer Type Detailed -#Identifier to uniquely specify a patient. A unique sample identifier. Subtype description. Disease type. Cancer Type Detailed. -#STRING STRING STRING STRING STRING -#1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE CANCER_TYPE CANCER_TYPE_DETAILED -TEST-PAT1 TEST-PAT1-SAMPLE1 Luminal A Cancer_type20 Cancer_type20_Sub16 -TEST-PAT1 TEST-PAT1-SAMPLE2 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1 TEST-PAT1-SAMPLE3 basal-like Cancer_type8 Cancer_type8_Sub13 -TEST-PAT1 TEST-PAT1-SAMPLE4 basal-like Cancer_type17 Cancer_type17_Sub10 -TEST-PAT1 TEST-PAT1-SAMPLE5 Her2 enriched Cancer_type27 Cancer_type27_Sub18 -TEST-PAT1 TEST-PAT1-SAMPLE6 Luminal A Cancer_type7 Cancer_type7_Sub13 -TEST-PAT2 TEST-PAT2-SAMPLE1 Luminal A Cancer_type23 Cancer_type23_Sub3 -TEST-PAT2 TEST-PAT2-SAMPLE2 basal-like Cancer_type7 Cancer_type7_Sub5 diff --git a/core/src/test/scripts/test_data/data_clin_order2.txt b/core/src/test/scripts/test_data/data_clin_order2.txt deleted file mode 100644 index c83b3bca5b6..00000000000 --- a/core/src/test/scripts/test_data/data_clin_order2.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Sample Identifier Patient Identifier Subtype Cancer Type Cancer Type Detailed -#A unique sample identifier. Identifier to uniquely specify a patient. Subtype description. Disease type. Cancer Type Detailed. -#STRING STRING STRING STRING STRING -#1 1 1 1 1 -SAMPLE_ID PATIENT_ID SUBTYPE CANCER_TYPE CANCER_TYPE_DETAILED -TEST-PAT1-SAMPLE1 TEST-PAT1 Luminal A Cancer_type20 Cancer_type20_Sub16 -TEST-PAT1-SAMPLE2 TEST-PAT1 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1-SAMPLE3 TEST-PAT1 basal-like Cancer_type8 Cancer_type8_Sub13 -TEST-PAT1-SAMPLE4 TEST-PAT1 basal-like Cancer_type17 Cancer_type17_Sub10 -TEST-PAT1-SAMPLE5 TEST-PAT1 Her2 enriched Cancer_type27 Cancer_type27_Sub18 -TEST-PAT1-SAMPLE6 TEST-PAT1 Luminal A Cancer_type7 Cancer_type7_Sub13 -TEST-PAT2-SAMPLE1 TEST-PAT2 Luminal A Cancer_type23 Cancer_type23_Sub3 -TEST-PAT2-SAMPLE2 TEST-PAT2 basal-like Cancer_type7 Cancer_type7_Sub5 diff --git a/core/src/test/scripts/test_data/data_clin_patient_without_samples.txt b/core/src/test/scripts/test_data/data_clin_patient_without_samples.txt deleted file mode 100644 index e9abdd65eb4..00000000000 --- a/core/src/test/scripts/test_data/data_clin_patient_without_samples.txt +++ /dev/null @@ -1,14 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. -#STRING NUMBER STRING NUMBER STRING -#1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS -TEST-PAT1 272 0:LIVING 272 1:Recurred/Progressed -TEST-PAT3 208 0:LIVING 208 1:Recurred/Progressed -TEST-PAT4 60 1:DECEASED 60 1:Recurred/Progressed -TEST-PAT6 151 0:LIVING 151 1:Recurred/Progressed -CASPER 12 1:DECEASED 12 1:Recurred/Progressed -TEST-PAT5 290 0:LIVING 290 1:Recurred/Progressed -TEST-PAT7 88 0:LIVING 88 1:Recurred/Progressed -TEST-PAT9 72 0:LIVING 72 1:Recurred/Progressed -TEST-PAT2 161 1:DECEASED 161 NA diff --git a/core/src/test/scripts/test_data/data_clin_repeated_sample.txt b/core/src/test/scripts/test_data/data_clin_repeated_sample.txt deleted file mode 100644 index 384a0efae53..00000000000 --- a/core/src/test/scripts/test_data/data_clin_repeated_sample.txt +++ /dev/null @@ -1,14 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Cancer Type Cancer Type Detailed -#Identifier to uniquely specify a patient. A unique sample identifier. Subtype description. Disease type. Cancer Type Detailed. -#STRING STRING STRING STRING STRING -#1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE CANCER_TYPE CANCER_TYPE_DETAILED -TEST-PAT1 TEST-PAT1-SAMPLE1 Luminal A Cancer_type20 Cancer_type20_Sub16 -TEST-PAT1 TEST-PAT1-SAMPLE2 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1 TEST-PAT1-SAMPLE3 basal-like Cancer_type8 Cancer_type8_Sub13 -TEST-PAT1 TEST-PAT1-SAMPLE4 basal-like Cancer_type17 Cancer_type17_Sub10 -TEST-PAT1 TEST-PAT1-SAMPLE5 Her2 enriched Cancer_type27 Cancer_type27_Sub18 -TEST-PAT1 TEST-PAT1-SAMPLE2 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1 TEST-PAT1-SAMPLE6 Luminal A Cancer_type7 Cancer_type7_Sub13 -TEST-PAT2 TEST-PAT2-SAMPLE1 Luminal A Cancer_type23 Cancer_type23_Sub3 -TEST-PAT2 TEST-PAT2-SAMPLE2 basal-like Cancer_type7 Cancer_type7_Sub5 diff --git a/core/src/test/scripts/test_data/data_clin_repeated_tcga_sample.txt b/core/src/test/scripts/test_data/data_clin_repeated_tcga_sample.txt deleted file mode 100644 index 660eb41c97f..00000000000 --- a/core/src/test/scripts/test_data/data_clin_repeated_tcga_sample.txt +++ /dev/null @@ -1,14 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Cancer Type Cancer Type Detailed -#Identifier to uniquely specify a patient. A unique sample identifier. Subtype description. Disease type. Cancer Type Detailed. -#STRING STRING STRING STRING STRING -#1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE CANCER_TYPE CANCER_TYPE_DETAILED -TEST-PAT1 TCGA-PAT1-SAMPLE1 Luminal A Cancer_type20 Cancer_type20_Sub16 -TEST-PAT1 TCGA-PAT1-SAMPLE2 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1 TCGA-PAT1-SAMPLE3 basal-like Cancer_type8 Cancer_type8_Sub13 -TEST-PAT1 TCGA-PAT1-SAMPLE4 basal-like Cancer_type17 Cancer_type17_Sub10 -TEST-PAT1 TCGA-PAT1-SAMPLE5 Her2 enriched Cancer_type27 Cancer_type27_Sub18 -TEST-PAT1 TCGA-PAT1-SAMPLE2 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1 TCGA-PAT1-SAMPLE6 Luminal A Cancer_type7 Cancer_type7_Sub13 -TEST-PAT2 TCGA-PAT2-SAMPLE1 Luminal A Cancer_type23 Cancer_type23_Sub3 -TEST-PAT2 TCGA-PAT2-SAMPLE2 basal-like Cancer_type7 Cancer_type7_Sub5 diff --git a/core/src/test/scripts/test_data/data_clin_wrong_ids.txt b/core/src/test/scripts/test_data/data_clin_wrong_ids.txt deleted file mode 100644 index eb9750fe834..00000000000 --- a/core/src/test/scripts/test_data/data_clin_wrong_ids.txt +++ /dev/null @@ -1,12 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Cancer Type Cancer Type Detailed -#Identifier to uniquely specify a patient. A unique sample identifier. Subtype description. Disease type. Cancer Type Detailed. -#STRING STRING STRING STRING STRING -#1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE CANCER_TYPE CANCER_TYPE_DETAILED -TEST-PAT1 TEST-PAT1- SAMPLE1 Luminal A Cancer_type20 Cancer_type20_Sub16 -TEST-PAT1 TEST-PAT1,SAMPLE2 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1 TEST-PAT1;SAMPLE3 basal-like Cancer_type8 Cancer_type8_Sub13 -TEST-PAT1 TEST+PAT1/SAMPLE4 basal-like Cancer_type17 Cancer_type17_Sub10 -TEST-PAT1 TEST-PAT1-SAMPLE5 Her2 enriched Cancer_type27 Cancer_type27_Sub18 -TEST-PAT1 TEST-PAT1*SAMPLE6 Luminal A Cancer_type7 Cancer_type7_Sub13 -TEST-PAT1 TEST-PAT1:SAMPLE6 Luminal A Cancer_type7 Cancer_type7_Sub13 diff --git a/core/src/test/scripts/test_data/data_clin_wrong_patient_id.txt b/core/src/test/scripts/test_data/data_clin_wrong_patient_id.txt deleted file mode 100644 index a2ebbca2a43..00000000000 --- a/core/src/test/scripts/test_data/data_clin_wrong_patient_id.txt +++ /dev/null @@ -1,12 +0,0 @@ -#Patient Identifier Overall Survival (Months) Overall Survival Status Disease Free (Months) Disease Free Status -#Identifier to uniquely specify a patient. Overall survival in months since initial diagnosis. Overall patient survival status. Disease free (months) since initial treatment. Disease free status since initial treatment. -#STRING NUMBER STRING NUMBER STRING -#1 1 1 1 1 -PATIENT_ID OS_MONTHS OS_STATUS DFS_MONTHS DFS_STATUS -TEST- PAT1 272 0:ALIVE 272 1:Recurred/Progressed -TEST,PAT3 208 0:LIVING 208 1:Recurred/Progressed -TEST;PAT4 60 1:DECEASED 60 1:Recurred/Progressed -TEST/PAT6 151 0:LIVING 151 1:Recurred/Progressed -TEST+PAT5 290 0:LIVING 290 Progressed -TEST:PAT7 88 0:LIVING 88 1:recurred/progressed -TEST*PAT9 72 0:LIVING 72 1:Recurred/Progressed diff --git a/core/src/test/scripts/test_data/data_clinical_pat_no_hdr.txt b/core/src/test/scripts/test_data/data_clinical_pat_no_hdr.txt deleted file mode 100644 index f8727e90084..00000000000 --- a/core/src/test/scripts/test_data/data_clinical_pat_no_hdr.txt +++ /dev/null @@ -1,13 +0,0 @@ -PATIENT_ID AGE CANCER_TYPE -TEST-PAT1 60 Breast Cancer -TEST-PAT2 53 Glioma -TEST-PAT3 57 Glioma -TEST-PAT4 63 Breast Cancer -TEST-PAT5 69 Glioma -TEST-PAT6 67 Lung Cancer -TEST-PAT7 59 Glioma -TEST-PAT8 55 Breast Cancer -TEST-PAT9 54 Breast Cancer -TEST-PAT10 63 Glioma -TEST-PAT11 62 Breast Cancer -TEST-PAT12 65 Glioma diff --git a/core/src/test/scripts/test_data/data_clinical_sam_no_hdr.txt b/core/src/test/scripts/test_data/data_clinical_sam_no_hdr.txt deleted file mode 100644 index f3c5a8ee291..00000000000 --- a/core/src/test/scripts/test_data/data_clinical_sam_no_hdr.txt +++ /dev/null @@ -1,13 +0,0 @@ -SAMPLE_ID PATIENT_ID METASTATIC_SITE SAMPLE_TYPE -TEST-PAT1-01 TEST-PAT1 NA Metastatic -TEST-PAT2-01 TEST-PAT2 NA Primary -TEST-PAT3-01 TEST-PAT3 NA Primary -TEST-PAT4-01 TEST-PAT4 NA Metastatic -TEST-PAT5-01 TEST-PAT5 NA Primary -TEST-PAT6-01 TEST-PAT6 NA Primary -TEST-PAT7-01 TEST-PAT7 NA Metastatic -TEST-PAT8-01 TEST-PAT8 NA Primary -TEST-PAT9-01 TEST-PAT9 NA Metastatic -TEST-PAT10-01 TEST-PAT10 NA Primary -TEST-PAT11-01 TEST-PAT11 NA Metastatic -TEST-PAT12-01 TEST-PAT12 NA Metastatic diff --git a/core/src/test/scripts/test_data/data_cna_blank_heading.txt b/core/src/test/scripts/test_data/data_cna_blank_heading.txt deleted file mode 100644 index bf0fe3d59ec..00000000000 --- a/core/src/test/scripts/test_data/data_cna_blank_heading.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 116983 0 -1 0 -1 2 NA -AGRN 375790 0 -1 0 -1 2 NA -ATAD3A 55210 0 -1 NA -1 2 NA -ATAD3B 83858 0 -1 0 -1 2 NA -ATAD3C 219293 0 -1 0 -1 2 NA -AURKAIP1 54998 0 -1 0 -1 2 NA -B3GALT6 126792 0 -1 0 -1 2 NA diff --git a/core/src/test/scripts/test_data/data_cna_cytoband.txt b/core/src/test/scripts/test_data/data_cna_cytoband.txt deleted file mode 100644 index 82d4e408f40..00000000000 --- a/core/src/test/scripts/test_data/data_cna_cytoband.txt +++ /dev/null @@ -1,9 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Cytoband TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 116983 1p36.33 0 -1 0 -1 2 -AGRN 375790 1p36.33 0 -1 0 -1 2 -ATAD3A 55210 1p36.33 0 -1 NA -1 2 -ATAD3B 83858 1p36.33 0 -1 0 -1 2 -ATAD3C 219293 1p36.33 0 -1 0 -1 2 -AURKAIP1 54998 1p36.33 0 -1 0 -1 2 -B3GALT6 126792 1p36.33 0 -1 0 -1 2 -ERCC5 2073 13q33.1 0 -1 0 -1.5 2 diff --git a/core/src/test/scripts/test_data/data_cna_duplicate_gene.txt b/core/src/test/scripts/test_data/data_cna_duplicate_gene.txt deleted file mode 100644 index 8b9e865a8ee..00000000000 --- a/core/src/test/scripts/test_data/data_cna_duplicate_gene.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 116983 0 -1 0 -1 2 -AGRN 375790 0 -1 0 -1 2 -ATAD3A 55210 0 -1 NA -1 2 -ATAD3B 83858 0 -1 0 -1 2 -CENTB5 0 -1 spam -1 3 -AURKAIP1 54998 0 -1 0 -1 2 -B3GALT6 126792 0 -1 0 -1 2 diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_both.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_both.txt deleted file mode 100644 index f03faaa9f41..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_both.txt +++ /dev/null @@ -1,9 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 116983 0 -1 0 -1 2 -AGRN 375790 0 -1 0 -1 2 -ATAD3A 55210 0 -1 NA -1 2 -ATAD3B 83858 0 -1 0 -1 2 -ATAD3C 219293 0 -1 0 -1 2 -AURKAIP1 54998 0 -1 0 -1 2 -B3GALT6 126792 0 -1 0 -1 2 -ERCC5 2073 0 -1 0 -1.5 2 diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_couple.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_couple.txt deleted file mode 100644 index 5400ecc95df..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_couple.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 375790 0 -1 0 -1 2 -AGRN 116983 0 -1 0 -1 2 -ATAD3A 55210 0 -1 0 -1 2 -ATAD3B 83858 0 -1 0 -1 2 -ATAD3C 219293 0 -1 0 -1 2 -AURKAIP1 54998 0 -1 0 -1 2 -B3GALT6 126792 0 -1 0 -1 2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_entrez.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_entrez.txt deleted file mode 100644 index b1870ccf98e..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_entrez.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 999999999 0 -1 0 -1 2 -AGRN 888888888 0 -1 0 -1 2 -ATAD3A 55210 0 -1 0 -1 2 -ATAD3B 83858 0 -1 0 -1 2 -ATAD3C 219293 0 -1 0 -1 2 -AURKAIP1 54998 0 -1 0 -1 2 -B3GALT6 126792 0 -1 0 -1 2 diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_hugo.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_hugo.txt deleted file mode 100644 index c1892b4f137..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_hugo.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -xxACAP3 116983 0 -1 0 -1 2 -xxAGRN 375790 0 -1 0 -1 2 -ATAD3A 55210 0 -1 0 -1 2 -ATAD3B 83858 0 -1 0 -1 2 -ATAD3C 219293 0 -1 0 -1 2 -AURKAIP1 54998 0 -1 0 -1 2 -B3GALT6 126792 0 -1 0 -1 2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_hugo_integer.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_hugo_integer.txt deleted file mode 100644 index 0ad8404d11f..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_both_invalid_hugo_integer.txt +++ /dev/null @@ -1,10 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -20MER2 1 0 -1 0 -1 2 -3.8-1.4 2 0 -1 0 -1 2 -5'URS 3 0 -1 0 -1 2 -1-ACAP3 116983 0 -1 0 -1 2 -9-Sep 375790 0 -1 0 -1 2 -7SK 55210 0 -1 0 -1 2 -7SK|test 83858 0 -1 0 -1 2 -ATAD3C 219293 0 -1 0 -1 2 -AURKAIP1 54998 0 -1 0 -1 2 diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_entrez_only.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_entrez_only.txt deleted file mode 100644 index 5680c3fba8f..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_entrez_only.txt +++ /dev/null @@ -1,8 +0,0 @@ -Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -116983 0 -1 0 -1 2 -375790 0 -1 0 -1 2 -55210 0 -1 0 -1 2 -83858 0 -1 0 -1 2 -219293 0 -1 0 -1 2 -54998 0 -1 0 -1 2 -126792 0 -1 0 -1 2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_entrez_only_invalid.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_entrez_only_invalid.txt deleted file mode 100644 index a161d35c09b..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_entrez_only_invalid.txt +++ /dev/null @@ -1,8 +0,0 @@ -Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -116983 0 -1 0 -1 2 -375790 0 -1 0 -1 2 -55210 0 -1 0 -1 2 -83858 0 -1 0 -1 2 -219293 0 -1 0 -1 2 -1073741824 0 -1 0 -1 2 -2147483647 0 -1 0 -1 2 diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only.txt deleted file mode 100644 index c06bc0cc5c1..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 0 -1 0 -1 2 -AGRN 0 -1 0 -1 2 -ATAD3A 0 -1 0 -1 2 -ATAD3B 0 -1 0 -1 2 -ATAD3C 0 -1 0 -1 2 -AURKAIP1 0 -1 0 -1 2 -B3GALT6 0 -1 0 -1 2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_ambiguous.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_ambiguous.txt deleted file mode 100644 index a7536ca9ca9..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_ambiguous.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 0 -1 0 -1 2 -AGRN 0 -1 0 -1 2 -TRAPPC2P1 0 -1 0 -1 2 -ATAD3B 0 -1 0 -1 2 -ATAD3C 0 -1 0 -1 2 -AURKAIP1 0 -1 0 -1 2 -B3GALT6 0 -1 0 -1 2 diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_invalid.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_invalid.txt deleted file mode 100644 index ba4299e98c7..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_invalid.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 0 -1 0 -1 2 -AGRN 0 -1 0 -1 2 -xxATAD3A 0 -1 0 -1 2 -xxATAD3B 0 -1 0 -1 2 -ATAD3C 0 -1 0 -1 2 -AURKAIP1 0 -1 0 -1 2 -B3GALT6 0 -1 0 -1 2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_possible_alias.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_possible_alias.txt deleted file mode 100644 index 452c8390713..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_hugo_only_possible_alias.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 0 -1 0 -1 2 -AGRN 0 -1 0 -1 2 -ACT 0 -1 0 -1 2 -ATAD3B 0 -1 0 -1 2 -ATAD3C 0 -1 0 -1 2 -AURKAIP1 0 -1 0 -1 2 -B3GALT6 0 -1 0 -1 2 diff --git a/core/src/test/scripts/test_data/data_cna_genecol_presence_neither.txt b/core/src/test/scripts/test_data/data_cna_genecol_presence_neither.txt deleted file mode 100644 index 6ad58291204..00000000000 --- a/core/src/test/scripts/test_data/data_cna_genecol_presence_neither.txt +++ /dev/null @@ -1,8 +0,0 @@ -TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -0 -1 0 -1 2 -0 -1 0 -1 2 -0 -1 0 -1 2 -0 -1 0 -1 2 -0 -1 0 -1 2 -0 -1 0 -1 2 -0 -1 0 -1 2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_cna_invalid_values.txt b/core/src/test/scripts/test_data/data_cna_invalid_values.txt deleted file mode 100644 index 3e31ef3e3d1..00000000000 --- a/core/src/test/scripts/test_data/data_cna_invalid_values.txt +++ /dev/null @@ -1,9 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -ACAP3 116983 0 -1 0 -1 2 -AGRN 375790 0 -1 0 -1 -ATAD3A 55210 0 -1 NA -1 2 -ATAD3B 83858 0 0 -1 2 -ATAD3C 219293 3 -1 0 -1 2 -AURKAIP1 54998 0 -1 0 AURKAIP1 2 -B3GALT6 126792 0 -1 [Not Available] -1 2 -ERCC5 2073 0 -1 0 1.5 2 diff --git a/core/src/test/scripts/test_data/data_cna_long_duplicated_entrez.txt b/core/src/test/scripts/test_data/data_cna_long_duplicated_entrez.txt deleted file mode 100644 index 3155aeef82b..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_duplicated_entrez.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 - 116983 TCGA-A1-A0SB-01 0 - 116983 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 -ATAD3C 219293 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 0 -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SD-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 -1 -ATAD3C 219293 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 0 -ATAD3B 83858 TCGA-A1-A0SE-01 0 -ATAD3C 219293 TCGA-A1-A0SE-01 0 -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 -1 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 -ATAD3C 219293 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 2 -ATAD3C 219293 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_duplicated_gene.txt b/core/src/test/scripts/test_data/data_cna_long_duplicated_gene.txt deleted file mode 100644 index ba436952d8a..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_duplicated_gene.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 TCGA-A1-A0SB-01 0 -AGRN 375790 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 -ATAD3C 219293 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 0 -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SB-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 -1 -ATAD3C 219293 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 0 -ATAD3B 83858 TCGA-A1-A0SE-01 0 -ATAD3C 219293 TCGA-A1-A0SE-01 0 -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 -1 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 -ATAD3C 219293 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 2 -ATAD3C 219293 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_no_custom_driver.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_no_custom_driver.txt deleted file mode 100644 index eb4299445c5..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_no_custom_driver.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 TCGA-A1-A0SB-01 0 -AGRN 375790 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 -ATAD3C 219293 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 0 -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SD-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 -1 -ATAD3C 219293 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 0 -ATAD3B 83858 TCGA-A1-A0SE-01 0 -ATAD3C 219293 TCGA-A1-A0SE-01 0 -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 -1 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 -ATAD3C 219293 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 -AGRN 375790 TCGA-A2-A04U-01 2 -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 2 -ATAD3C 219293 TCGA-A2-A04U-01 2 -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_no_namespace.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_no_namespace.txt deleted file mode 100644 index e6228890606..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_no_namespace.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -ACAP3 116983 TCGA-A1-A0SB-01 0 -AGRN 375790 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 -ATAD3C 219293 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 0 -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SD-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 -1 -ATAD3C 219293 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 0 -ATAD3B 83858 TCGA-A1-A0SE-01 0 -ATAD3C 219293 TCGA-A1-A0SE-01 0 -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 -1 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 -ATAD3C 219293 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 2 -ATAD3C 219293 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_no_sample_id.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_no_sample_id.txt deleted file mode 100644 index 3490107eabc..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_no_sample_id.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 0 -AGRN 375790 0 -ATAD3A 55210 0 -ATAD3B 83858 0 -ATAD3C 219293 0 -AURKAIP1 54998 0 -ERCC5 2073 0 -ACAP3 116983 -1 -AGRN 375790 -1 -ATAD3A 55210 -1 -ATAD3B 83858 -1 -ATAD3C 219293 -1 -AURKAIP1 54998 -1 -ERCC5 2073 -1 -ACAP3 116983 0 -AGRN 375790 0 -ATAD3A 55210 0 -ATAD3B 83858 0 -ATAD3C 219293 0 -AURKAIP1 54998 0 -ERCC5 2073 0 -ACAP3 116983 -1 -AGRN 375790 -1 -ATAD3A 55210 -1 -ATAD3B 83858 -1 -ATAD3C 219293 -1 -AURKAIP1 54998 -1 -ERCC5 2073 -1 -ACAP3 116983 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 2 -ATAD3B 83858 2 -ATAD3C 219293 2 Putative_Passenger Test passenger -AURKAIP1 54998 2 -ERCC5 2073 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_no_value.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_no_value.txt deleted file mode 100644 index daeead6889d..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_no_value.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 TCGA-A1-A0SB-01 -AGRN 375790 TCGA-A1-A0SB-01 -ATAD3A 55210 TCGA-A1-A0SB-01 -ATAD3B 83858 TCGA-A1-A0SB-01 -ATAD3C 219293 TCGA-A1-A0SB-01 -AURKAIP1 54998 TCGA-A1-A0SB-01 -ERCC5 2073 TCGA-A1-A0SB-01 -ACAP3 116983 TCGA-A1-A0SD-01 -AGRN 375790 TCGA-A1-A0SD-01 -ATAD3A 55210 TCGA-A1-A0SD-01 -ATAD3B 83858 TCGA-A1-A0SD-01 -ATAD3C 219293 TCGA-A1-A0SD-01 -AURKAIP1 54998 TCGA-A1-A0SD-01 -ERCC5 2073 TCGA-A1-A0SD-01 -ACAP3 116983 TCGA-A1-A0SE-01 -AGRN 375790 TCGA-A1-A0SE-01 -ATAD3A 55210 TCGA-A1-A0SE-01 -ATAD3B 83858 TCGA-A1-A0SE-01 -ATAD3C 219293 TCGA-A1-A0SE-01 -AURKAIP1 54998 TCGA-A1-A0SE-01 -ERCC5 2073 TCGA-A1-A0SE-01 -ACAP3 116983 TCGA-A1-A0SH-01 -AGRN 375790 TCGA-A1-A0SH-01 -ATAD3A 55210 TCGA-A1-A0SH-01 -ATAD3B 83858 TCGA-A1-A0SH-01 -ATAD3C 219293 TCGA-A1-A0SH-01 -AURKAIP1 54998 TCGA-A1-A0SH-01 -ERCC5 2073 TCGA-A1-A0SH-01 -ACAP3 116983 TCGA-A2-A04U-01 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 -ATAD3B 83858 TCGA-A2-A04U-01 -ATAD3C 219293 TCGA-A2-A04U-01 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 -ERCC5 2073 TCGA-A2-A04U-01 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_all.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_presence_all.txt deleted file mode 100644 index d74032d550e..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_all.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 TCGA-A1-A0SB-01 0 -AGRN 375790 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 -ATAD3C 219293 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 0 -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SD-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 NA -ATAD3C 219293 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 0 -ATAD3B 83858 TCGA-A1-A0SE-01 0 -ATAD3C 219293 TCGA-A1-A0SE-01 NA -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 -1 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 -ATAD3C 219293 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 2 -ATAD3C 219293 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_entrez_only.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_presence_entrez_only.txt deleted file mode 100644 index ab7267d463d..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_entrez_only.txt +++ /dev/null @@ -1,36 +0,0 @@ -Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -116983 TCGA-A1-A0SB-01 0 -375790 TCGA-A1-A0SB-01 0 -55210 TCGA-A1-A0SB-01 0 -83858 TCGA-A1-A0SB-01 0 -219293 TCGA-A1-A0SB-01 0 -54998 TCGA-A1-A0SB-01 0 -2073 TCGA-A1-A0SB-01 0 -116983 TCGA-A1-A0SD-01 -1 -375790 TCGA-A1-A0SD-01 -1 -55210 TCGA-A1-A0SD-01 -1 -83858 TCGA-A1-A0SD-01 -1 -219293 TCGA-A1-A0SD-01 -1 -54998 TCGA-A1-A0SD-01 -1 -2073 TCGA-A1-A0SD-01 -1 -116983 TCGA-A1-A0SE-01 0 -375790 TCGA-A1-A0SE-01 0 -55210 TCGA-A1-A0SE-01 0 -83858 TCGA-A1-A0SE-01 0 -219293 TCGA-A1-A0SE-01 0 -54998 TCGA-A1-A0SE-01 0 -2073 TCGA-A1-A0SE-01 0 -116983 TCGA-A1-A0SH-01 -1 -375790 TCGA-A1-A0SH-01 -1 -55210 TCGA-A1-A0SH-01 -1 -83858 TCGA-A1-A0SH-01 -1 -219293 TCGA-A1-A0SH-01 -1 -54998 TCGA-A1-A0SH-01 -1 -2073 TCGA-A1-A0SH-01 -1 -116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -55210 TCGA-A2-A04U-01 2 -83858 TCGA-A2-A04U-01 2 -219293 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -54998 TCGA-A2-A04U-01 2 -2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_hugo_only.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_presence_hugo_only.txt deleted file mode 100644 index 66be6127b26..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_hugo_only.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 TCGA-A1-A0SB-01 0 -AGRN TCGA-A1-A0SB-01 0 -ATAD3A TCGA-A1-A0SB-01 0 -ATAD3B TCGA-A1-A0SB-01 0 -ATAD3C TCGA-A1-A0SB-01 0 -AURKAIP1 TCGA-A1-A0SB-01 0 -ERCC5 TCGA-A1-A0SB-01 0 -ACAP3 TCGA-A1-A0SD-01 -1 -AGRN TCGA-A1-A0SD-01 -1 -ATAD3A TCGA-A1-A0SD-01 -1 -ATAD3B TCGA-A1-A0SD-01 -1 -ATAD3C TCGA-A1-A0SD-01 -1 -AURKAIP1 TCGA-A1-A0SD-01 -1 -ERCC5 TCGA-A1-A0SD-01 -1 -ACAP3 TCGA-A1-A0SE-01 0 -AGRN TCGA-A1-A0SE-01 0 -ATAD3A TCGA-A1-A0SE-01 0 -ATAD3B TCGA-A1-A0SE-01 0 -ATAD3C TCGA-A1-A0SE-01 0 -AURKAIP1 TCGA-A1-A0SE-01 0 -ERCC5 TCGA-A1-A0SE-01 0 -ACAP3 TCGA-A1-A0SH-01 -1 -AGRN TCGA-A1-A0SH-01 -1 -ATAD3A TCGA-A1-A0SH-01 -1 -ATAD3B TCGA-A1-A0SH-01 -1 -ATAD3C TCGA-A1-A0SH-01 -1 -AURKAIP1 TCGA-A1-A0SH-01 -1 -ERCC5 TCGA-A1-A0SH-01 -1 -ACAP3 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A TCGA-A2-A04U-01 2 -ATAD3B TCGA-A2-A04U-01 2 -ATAD3C TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 TCGA-A2-A04U-01 2 -ERCC5 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_neither_genic.txt b/core/src/test/scripts/test_data/data_cna_long_genecol_presence_neither_genic.txt deleted file mode 100644 index 6f015002310..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_genecol_presence_neither_genic.txt +++ /dev/null @@ -1,36 +0,0 @@ -Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -TCGA-A1-A0SB-01 0 -TCGA-A1-A0SB-01 0 -TCGA-A1-A0SB-01 0 -TCGA-A1-A0SB-01 0 -TCGA-A1-A0SB-01 0 -TCGA-A1-A0SB-01 0 -TCGA-A1-A0SB-01 0 -TCGA-A1-A0SD-01 -1 -TCGA-A1-A0SD-01 -1 -TCGA-A1-A0SD-01 -1 -TCGA-A1-A0SD-01 -1 -TCGA-A1-A0SD-01 -1 -TCGA-A1-A0SD-01 -1 -TCGA-A1-A0SD-01 -1 -TCGA-A1-A0SE-01 0 -TCGA-A1-A0SE-01 0 -TCGA-A1-A0SE-01 0 -TCGA-A1-A0SE-01 0 -TCGA-A1-A0SE-01 0 -TCGA-A1-A0SE-01 0 -TCGA-A1-A0SE-01 0 -TCGA-A1-A0SH-01 -1 -TCGA-A1-A0SH-01 -1 -TCGA-A1-A0SH-01 -1 -TCGA-A1-A0SH-01 -1 -TCGA-A1-A0SH-01 -1 -TCGA-A1-A0SH-01 -1 -TCGA-A1-A0SH-01 -1 -TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -TCGA-A2-A04U-01 2 -TCGA-A2-A04U-01 2 -TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -TCGA-A2-A04U-01 2 -TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_invalid_values.txt b/core/src/test/scripts/test_data/data_cna_long_invalid_values.txt deleted file mode 100644 index 6f4a18e92dc..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_invalid_values.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 TCGA-A1-A0SB-01 0 -AGRN 375790 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 -ATAD3C 219293 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 [Not Available] -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SD-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 ATAD3B -ATAD3C 219293 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 N/A -ATAD3B 83858 TCGA-A1-A0SE-01 0 -ATAD3C 219293 TCGA-A1-A0SE-01 0 -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 1.5 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 -ATAD3C 219293 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 3 -ATAD3C 219293 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_one_hugo_same_gene.txt b/core/src/test/scripts/test_data/data_cna_long_one_hugo_same_gene.txt deleted file mode 100644 index 32a69ace08c..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_one_hugo_same_gene.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 TCGA-A1-A0SB-01 0 -AGRN 375790 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 - 116983 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 0 -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SD-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 -1 - 116983 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 0 -ATAD3B 83858 TCGA-A1-A0SE-01 0 - 116983 TCGA-A1-A0SE-01 0 -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 -1 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 - 116983 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 2 - 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_cna_long_two_hugos_same_gene.txt b/core/src/test/scripts/test_data/data_cna_long_two_hugos_same_gene.txt deleted file mode 100644 index 070e47723d1..00000000000 --- a/core/src/test/scripts/test_data/data_cna_long_two_hugos_same_gene.txt +++ /dev/null @@ -1,36 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Sample_Id Value cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation MyNamespace.column1 MyNamespace.column2 -ACAP3 116983 TCGA-A1-A0SB-01 0 -AGRN 375790 TCGA-A1-A0SB-01 0 -ATAD3A 55210 TCGA-A1-A0SB-01 0 -ATAD3B 83858 TCGA-A1-A0SB-01 0 -CENTB5 TCGA-A1-A0SB-01 0 -AURKAIP1 54998 TCGA-A1-A0SB-01 0 -ERCC5 2073 TCGA-A1-A0SB-01 0 -ACAP3 116983 TCGA-A1-A0SD-01 -1 -AGRN 375790 TCGA-A1-A0SD-01 -1 -ATAD3A 55210 TCGA-A1-A0SD-01 -1 -ATAD3B 83858 TCGA-A1-A0SD-01 -1 -CENTB5 TCGA-A1-A0SD-01 -1 -AURKAIP1 54998 TCGA-A1-A0SD-01 -1 -ERCC5 2073 TCGA-A1-A0SD-01 -1 -ACAP3 116983 TCGA-A1-A0SE-01 0 -AGRN 375790 TCGA-A1-A0SE-01 0 -ATAD3A 55210 TCGA-A1-A0SE-01 0 -ATAD3B 83858 TCGA-A1-A0SE-01 0 -CENTB5 TCGA-A1-A0SE-01 0 -AURKAIP1 54998 TCGA-A1-A0SE-01 0 -ERCC5 2073 TCGA-A1-A0SE-01 0 -ACAP3 116983 TCGA-A1-A0SH-01 -1 -AGRN 375790 TCGA-A1-A0SH-01 -1 -ATAD3A 55210 TCGA-A1-A0SH-01 -1 -ATAD3B 83858 TCGA-A1-A0SH-01 -1 -CENTB5 TCGA-A1-A0SH-01 -1 -AURKAIP1 54998 TCGA-A1-A0SH-01 -1 -ERCC5 2073 TCGA-A1-A0SH-01 -1 -ACAP3 116983 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger Class 2 Class annotation -AGRN 375790 TCGA-A2-A04U-01 2 Putative_Driver Test driver Class 1 Class annotation -ATAD3A 55210 TCGA-A2-A04U-01 2 -ATAD3B 83858 TCGA-A2-A04U-01 2 -CENTB5 TCGA-A2-A04U-01 2 Putative_Passenger Test passenger -AURKAIP1 54998 TCGA-A2-A04U-01 2 -ERCC5 2073 TCGA-A2-A04U-01 2 Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/data_gene_matrix_duplicate_sample.txt b/core/src/test/scripts/test_data/data_gene_matrix_duplicate_sample.txt deleted file mode 100644 index 20b2a27d11e..00000000000 --- a/core/src/test/scripts/test_data/data_gene_matrix_duplicate_sample.txt +++ /dev/null @@ -1,4 +0,0 @@ -SAMPLE_ID mutations gistic -TCGA-A1-A0SB-01 TESTPANEL2 TESTPANEL1 -TCGA-A1-A0SD-01 NA TESTPANEL1 -TCGA-A1-A0SB-01 TESTPANEL2 TESTPANEL1 diff --git a/core/src/test/scripts/test_data/data_generic_assay_categorical_invalid_predefined_data.txt b/core/src/test/scripts/test_data/data_generic_assay_categorical_invalid_predefined_data.txt deleted file mode 100644 index adc685a1237..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_categorical_invalid_predefined_data.txt +++ /dev/null @@ -1,3 +0,0 @@ -ENTITY_STABLE_ID name description TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -1p 1p 1p category_1 gain loss unchanged Gained Lost Unchange Unknown -2p 2p 2p Gain Gain Loss Unchanged Gain Loss Unchanged NA diff --git a/core/src/test/scripts/test_data/data_generic_assay_categorical_valid_predefined_data.txt b/core/src/test/scripts/test_data/data_generic_assay_categorical_valid_predefined_data.txt deleted file mode 100644 index fb9abd7d8ff..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_categorical_valid_predefined_data.txt +++ /dev/null @@ -1,3 +0,0 @@ -ENTITY_STABLE_ID name description TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -1p 1p 1p Loss Gain Gain Gain Unchanged Loss Loss -2p 2p 2p Gain Gain Loss Unchanged Gain Loss Unchanged NA diff --git a/core/src/test/scripts/test_data/data_generic_assay_empty_cell.txt b/core/src/test/scripts/test_data/data_generic_assay_empty_cell.txt deleted file mode 100644 index 7616819a368..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_empty_cell.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 url_1 category_1 category_2 category_2 category_2 category_1 category_1 category_3 category_4 -mean_2 mean_2 mean_2 url_2 category_1 category_1 category_2 category_1 category_2 category_3 category_4 -mean_3 mean_3 mean_3 url_3 category_2 category_1 category_2 category_2 category_1 category_2 NA category_3 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_patient_not_defined.txt b/core/src/test/scripts/test_data/data_generic_assay_patient_not_defined.txt deleted file mode 100644 index 76d13e7dd2e..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_patient_not_defined.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB TCGA-A1-A0SD TCGA-A1-A0SE NOT_DEFINEND_PATIENT TCGA-A2-A04U TCGA-B6-A0RS TCGA-BH-A0HP TCGA-BH-A18P -mean_1 mean_1 mean_1 url_1 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_2 mean_2 mean_2 url_2 0.002709404 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_3 mean_3 mean_3 url_3 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_sample_not_defined.txt b/core/src/test/scripts/test_data/data_generic_assay_sample_not_defined.txt deleted file mode 100644 index 5fdef0ccfaf..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_sample_not_defined.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 NOT_DEFINEND_SAMPLE TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 url_1 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_2 mean_2 mean_2 url_2 0.002709404 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_3 mean_3 mean_3 url_3 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_valid_binary.txt b/core/src/test/scripts/test_data/data_generic_assay_valid_binary.txt deleted file mode 100644 index f262a9b9848..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_valid_binary.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 url_1 true false false false true true yes no -mean_2 mean_2 mean_2 url_2 false true true false true false yes no -mean_3 mean_3 mean_3 url_3 false true false false true false NA yes \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_valid_categorical.txt b/core/src/test/scripts/test_data/data_generic_assay_valid_categorical.txt deleted file mode 100644 index da748f792fd..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_valid_categorical.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 url_1 category_1 category_2 category_2 category_2 category_1 category_1 category_3 category_4 -mean_2 mean_2 mean_2 url_2 category_2 category_1 category_1 category_2 category_1 category_2 category_3 category_4 -mean_3 mean_3 mean_3 url_3 category_2 category_1 category_2 category_2 category_1 category_2 NA category_3 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_valid_continuous.txt b/core/src/test/scripts/test_data/data_generic_assay_valid_continuous.txt deleted file mode 100644 index 81dc181d012..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_valid_continuous.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 url_1 NA 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_2 mean_2 mean_2 url_2 0.002709404 0.009212318 0.002650657 <0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_3 mean_3 mean_3 url_3 0.006035782 >0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 NA 0.020463421 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_with_non_numerical_data.txt b/core/src/test/scripts/test_data/data_generic_assay_with_non_numerical_data.txt deleted file mode 100644 index 3c466809b72..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_with_non_numerical_data.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 url_1 NA 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_2 mean_2 mean_2 url_2 NON_NUMERIC 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_3 mean_3 mean_3 url_3 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_with_not_defined_data.txt b/core/src/test/scripts/test_data/data_generic_assay_with_not_defined_data.txt deleted file mode 100644 index fa02cee2dc9..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_with_not_defined_data.txt +++ /dev/null @@ -1,4 +0,0 @@ -ENTITY_STABLE_ID name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 url_1 true false false false true true yes no -mean_2 mean_2 mean_2 url_2 false NOT_DEFINED true false true false yes no -mean_3 mean_3 mean_3 url_3 false true false false true false NA yes \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_generic_assay_without_entity_id_column.txt b/core/src/test/scripts/test_data/data_generic_assay_without_entity_id_column.txt deleted file mode 100644 index bb6140e61f3..00000000000 --- a/core/src/test/scripts/test_data/data_generic_assay_without_entity_id_column.txt +++ /dev/null @@ -1,4 +0,0 @@ -name description url TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 url_1 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_2 mean_2 url_2 0.002709404 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_3 mean_3 url_3 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_gisticgenes_amp_valid.txt b/core/src/test/scripts/test_data/data_gisticgenes_amp_valid.txt deleted file mode 100644 index 058be1b29cd..00000000000 --- a/core/src/test/scripts/test_data/data_gisticgenes_amp_valid.txt +++ /dev/null @@ -1,4 +0,0 @@ -index chromosome region_start region_end peak_start peak_end enlarged_peak_start enlarged_peak_end n_genes_in_region genes_in_region n_genes_in_peak genes_in_peak n_genes_on_chip genes_on_chip top 3 amp cytoband q_value -1 1 120527361 247812431 150563314 150621176 150345470 150703005 15 SNORA40,RN7SL600P, RN7SL473P,C1orf138,LINC00568,CTSS,ECM1,ENSA,MCL1,RPRD2,ADAMTSL4,GOLPH3L,TARS2,HORMAD1,MIR4257, 4 SNORA40|ENSG00000253047.1,ENSA,MCL1,GOLPH3L, 1 1q21.3 2.7818e-43 -2 1 85980350 86006717 85988564 85991712 85980350 85998036 1 DDAH1 1 DDAH1, 1 1p22.3 4.1251e-13 -29 20 44878266 62219648 52250820 52275163 52163167 52364760 1 ZNF217, 0 [ZNF217] 1 20q13.2 2.1378e-48 diff --git a/core/src/test/scripts/test_data/data_gisticgenes_del_format_errors.txt b/core/src/test/scripts/test_data/data_gisticgenes_del_format_errors.txt deleted file mode 100644 index 36a0c20fae8..00000000000 --- a/core/src/test/scripts/test_data/data_gisticgenes_del_format_errors.txt +++ /dev/null @@ -1,6 +0,0 @@ -index chromosome peak_start peak_end genes_in_region amp cytoband q_value - 2 16796742 17340878 UBXN10,PLA2G2C,PLA2G2D, n 1p36.13 1.0212e-46 -4 3 49846890 49836465 RNA5SP131,SEMA3B, 0 3p21.31 1.602e-31j -2 1 93642428 93753282 BCL2L15,LRIG2,WNT2B 1 1r22.1 6.5822e-11 -39 15347621 15372509 RNA5SP488,ANKRD20A11P,CYP4F29P, 0 q11.2 5.9777e-09 -40 22 48883796 49287130 ARSA,,RN7SL500P,DENND6B,TTLL8, 0 22q13.32 0.45243 diff --git a/core/src/test/scripts/test_data/data_gisticgenes_del_region_without_genes.txt b/core/src/test/scripts/test_data/data_gisticgenes_del_region_without_genes.txt deleted file mode 100644 index 8cafadf26ad..00000000000 --- a/core/src/test/scripts/test_data/data_gisticgenes_del_region_without_genes.txt +++ /dev/null @@ -1,6 +0,0 @@ -index chromosome peak_start peak_end genes_in_region amp cytoband q_value -1 1 16796742 17340878 UBXN10,PLA2G2C,PLA2G2D, 0 1p36.13 1.0212e-46 -4 3 49836465 49846890 RNA5SP131,SEMA3B, 0 3p21.31 1.602e-31 -2 1 93642428 93753282 0 1p22.1 6.5822e-11 -39 21 15347621 15372509 , 0 21q11.2 5.9777e-09 -40 22 48883796 49287130 ARSA,RN7SL500P,DENND6B,TTLL8, 0 22q13.32 0.45243 diff --git a/core/src/test/scripts/test_data/data_gisticgenes_del_valid.txt b/core/src/test/scripts/test_data/data_gisticgenes_del_valid.txt deleted file mode 100644 index 2df369e9cdd..00000000000 --- a/core/src/test/scripts/test_data/data_gisticgenes_del_valid.txt +++ /dev/null @@ -1,6 +0,0 @@ -index chromosome peak_start peak_end genes_in_region amp cytoband q_value -1 1 16796742 17340878 UBXN10,PLA2G2C,PLA2G2D, 0 1p36.13 1.0212e-46 -4 3 49836465 49846890 RNA5SP131,SEMA3B, 0 3p21.31 1.602e-31 -2 1 93642428 93753282 BCL2L15,LRIG2,WNT2B 0 1p22.1 6.5822e-11 -39 21 15347621 15372509 RNA5SP488,ANKRD20A11P,CYP4F29P, 0 21q11.2 5.9777e-09 -40 22 48883796 49287130 ARSA,RN7SL500P,DENND6B,TTLL8, 0 22q13.32 0.45243 diff --git a/core/src/test/scripts/test_data/data_gisticgenes_del_zero_length_peak.txt b/core/src/test/scripts/test_data/data_gisticgenes_del_zero_length_peak.txt deleted file mode 100644 index 28568f7baa4..00000000000 --- a/core/src/test/scripts/test_data/data_gisticgenes_del_zero_length_peak.txt +++ /dev/null @@ -1,7 +0,0 @@ -index chromosome peak_start peak_end genes_in_region amp cytoband q_value -1 1 16796742 17340878 UBXN10,PLA2G2C,PLA2G2D, 0 1p36.13 1.0212e-46 -4 3 49836465 49846890 RNA5SP131,SEMA3B, 0 3p21.31 1.602e-31 -2 1 93642428 93753282 BCL2L15,LRIG2,WNT2B 0 1p22.1 6.5822e-11 -3 2 242476062 242476062 RNA5SP122,RNPEPL1, 0 2q37.3 7.2629e-12 -39 21 15347621 15372509 RNA5SP488,ANKRD20A11P,CYP4F29P, 0 21q11.2 5.9777e-09 -40 22 48883796 49287130 ARSA,RN7SL500P,DENND6B,TTLL8, 0 22q13.32 0.45243 diff --git a/core/src/test/scripts/test_data/data_gsva_pvalues_missing_column.txt b/core/src/test/scripts/test_data/data_gsva_pvalues_missing_column.txt deleted file mode 100644 index 49b679af1e1..00000000000 --- a/core/src/test/scripts/test_data/data_gsva_pvalues_missing_column.txt +++ /dev/null @@ -1,8 +0,0 @@ -geneset_id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -GO_ACYLGLYCEROL_HOMEOSTASIS 0.00497512437810945 0.00497512437810945 0.0845771144278607 0.00497512437810945 0.00497512437810945 -GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_ANTEROGRADE_AXONAL_TRANSPORT 0.00497512437810945 0.00995024875621891 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_APICAL_PROTEIN_LOCALIZATION 0.00497512437810945 0.169154228855721 0.00497512437810945 0.00497512437810945 0.283582089552239 -GO_ATP_DEPENDENT_CHROMATIN_REMODELING 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_CARBOHYDRATE_CATABOLIC_PROCESS 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_CARDIAC_CHAMBER_DEVELOPMENT 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 diff --git a/core/src/test/scripts/test_data/data_gsva_pvalues_missing_row.txt b/core/src/test/scripts/test_data/data_gsva_pvalues_missing_row.txt deleted file mode 100644 index 49b679af1e1..00000000000 --- a/core/src/test/scripts/test_data/data_gsva_pvalues_missing_row.txt +++ /dev/null @@ -1,8 +0,0 @@ -geneset_id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -GO_ACYLGLYCEROL_HOMEOSTASIS 0.00497512437810945 0.00497512437810945 0.0845771144278607 0.00497512437810945 0.00497512437810945 -GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_ANTEROGRADE_AXONAL_TRANSPORT 0.00497512437810945 0.00995024875621891 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_APICAL_PROTEIN_LOCALIZATION 0.00497512437810945 0.169154228855721 0.00497512437810945 0.00497512437810945 0.283582089552239 -GO_ATP_DEPENDENT_CHROMATIN_REMODELING 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_CARBOHYDRATE_CATABOLIC_PROCESS 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_CARDIAC_CHAMBER_DEVELOPMENT 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 diff --git a/core/src/test/scripts/test_data/data_gsva_pvalues_outrange.txt b/core/src/test/scripts/test_data/data_gsva_pvalues_outrange.txt deleted file mode 100644 index 7a12fd72591..00000000000 --- a/core/src/test/scripts/test_data/data_gsva_pvalues_outrange.txt +++ /dev/null @@ -1,8 +0,0 @@ -geneset_id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -GO_ACYLGLYCEROL_HOMEOSTASIS 0.00497512437810945 0.00497512437810945 0.0845771144278607 0.00497512437810945 0.00497512437810945 -GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_ANTEROGRADE_AXONAL_TRANSPORT 1.5 0.00995024875621891 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_APICAL_PROTEIN_LOCALIZATION 0.00497512437810945 1e-06 0.00497512437810945 0.00497512437810945 0.283582089552239 -GO_ATP_DEPENDENT_CHROMATIN_REMODELING 0.00497512437810945 0.00497512437810945 1e3 0.00497512437810945 0.00497512437810945 -GO_CARBOHYDRATE_CATABOLIC_PROCESS 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 0.00497512437810945 -GO_CARDIAC_CHAMBER_DEVELOPMENT 0.00497512437810945 -0.00000000000000005 0.00497512437810945 0.00497512437810945 0.00497512437810945 diff --git a/core/src/test/scripts/test_data/data_gsva_scores_geneset_not_in_database.txt b/core/src/test/scripts/test_data/data_gsva_scores_geneset_not_in_database.txt deleted file mode 100644 index 8d7efd0afc3..00000000000 --- a/core/src/test/scripts/test_data/data_gsva_scores_geneset_not_in_database.txt +++ /dev/null @@ -1,8 +0,0 @@ -geneset_id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -GO_ACYLGLYCEROL_HOMEOSTASIS -0.138520488027997 -0.442013761895225 -0.0585714696236384 0.230071239194925 -0.503435483643209 -HYVE_TEST_GENE_SET 0.0643924387145285 0.15400673115399 0.163692569807521 0.139595520977635 -0.0625185753394938 -GO_ANTEROGRADE_AXONAL_TRANSPORT 0.176754359100034 0.0850941592302596 0.16205156900834 0.137268555925834 0.306120094854227 -GO_APICAL_PROTEIN_LOCALIZATION 0.371393691351566 -0.0266464977322038 0.230296971105985 0.483241270805623 0.0116198191917293 -GO_ATP_DEPENDENT_CHROMATIN_REMODELING -0.293861251463613 -0.226227563676626 -0.546556962547473 -0.0811115513543749 0.56919171543422 -GO_CARBOHYDRATE_CATABOLIC_PROCESS -0.136810023470508 -0.124208475841744 -0.0923603625069832 -0.0435626290021717 -0.17202318334593 -GO_CARDIAC_CHAMBER_DEVELOPMENT 0.0898885015206211 0.300940950401182 0.392070715092965 0.207890745464433 -0.103345910055048 diff --git a/core/src/test/scripts/test_data/data_gsva_scores_missing_column.txt b/core/src/test/scripts/test_data/data_gsva_scores_missing_column.txt deleted file mode 100644 index f8ab5aefb07..00000000000 --- a/core/src/test/scripts/test_data/data_gsva_scores_missing_column.txt +++ /dev/null @@ -1,8 +0,0 @@ -geneset_id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 -GO_ACYLGLYCEROL_HOMEOSTASIS -0.138520488027997 -0.442013761895225 -0.0585714696236384 0.230071239194925 -GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS 0.0643924387145285 0.15400673115399 0.163692569807521 0.139595520977635 -GO_ANTEROGRADE_AXONAL_TRANSPORT 0.176754359100034 0.0850941592302596 0.16205156900834 0.137268555925834 -GO_APICAL_PROTEIN_LOCALIZATION 0.371393691351566 -0.0266464977322038 0.230296971105985 0.483241270805623 -GO_ATP_DEPENDENT_CHROMATIN_REMODELING -0.293861251463613 -0.226227563676626 -0.546556962547473 -0.0811115513543749 -GO_CARBOHYDRATE_CATABOLIC_PROCESS -0.136810023470508 -0.124208475841744 -0.0923603625069832 -0.0435626290021717 -GO_CARDIAC_CHAMBER_DEVELOPMENT 0.0898885015206211 0.300940950401182 0.392070715092965 0.207890745464433 diff --git a/core/src/test/scripts/test_data/data_gsva_scores_missing_row.txt b/core/src/test/scripts/test_data/data_gsva_scores_missing_row.txt deleted file mode 100644 index 3645bada0b2..00000000000 --- a/core/src/test/scripts/test_data/data_gsva_scores_missing_row.txt +++ /dev/null @@ -1,7 +0,0 @@ -geneset_id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -GO_ACYLGLYCEROL_HOMEOSTASIS -0.138520488027997 -0.442013761895225 -0.0585714696236384 0.230071239194925 -0.503435483643209 -GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS 0.0643924387145285 0.15400673115399 0.163692569807521 0.139595520977635 -0.0625185753394938 -GO_ANTEROGRADE_AXONAL_TRANSPORT 0.176754359100034 0.0850941592302596 0.16205156900834 0.137268555925834 0.306120094854227 -GO_APICAL_PROTEIN_LOCALIZATION 0.371393691351566 -0.0266464977322038 0.230296971105985 0.483241270805623 0.0116198191917293 -GO_ATP_DEPENDENT_CHROMATIN_REMODELING -0.293861251463613 -0.226227563676626 -0.546556962547473 -0.0811115513543749 0.56919171543422 -GO_CARDIAC_CHAMBER_DEVELOPMENT 0.0898885015206211 0.300940950401182 0.392070715092965 0.207890745464433 -0.103345910055048 diff --git a/core/src/test/scripts/test_data/data_gsva_scores_outrange.txt b/core/src/test/scripts/test_data/data_gsva_scores_outrange.txt deleted file mode 100644 index 7f70b7ea640..00000000000 --- a/core/src/test/scripts/test_data/data_gsva_scores_outrange.txt +++ /dev/null @@ -1,8 +0,0 @@ -geneset_id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 -GO_ACYLGLYCEROL_HOMEOSTASIS -0.138520488027997 -0.442013761895225 -0.0585714696236384 1.5 -0.503435483643209 -GO_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS 0.0643924387145285 0.15400673115399 0.163692569807521 0.139595520977635 -0.0625185753394938 -GO_ANTEROGRADE_AXONAL_TRANSPORT 0.176754359100034 0.0850941592302596 0.16205156900834 0.137268555925834 0.306120094854227 -GO_APICAL_PROTEIN_LOCALIZATION 2.371393691351566 -0.0266464977322038 0.230296971105985 0.483241270805623 0.0116198191917293 -GO_ATP_DEPENDENT_CHROMATIN_REMODELING -1 -0.226227563676626 -0.546556962547473 -0.0811115513543749 0.56919171543422 -GO_CARBOHYDRATE_CATABOLIC_PROCESS -0.136810023470508 -12 -0.0923603625069832 -0.0435626290021717 -0.17202318334593 -GO_CARDIAC_CHAMBER_DEVELOPMENT 0.0898885015206211 1 0.392070715092965 0.207890745464433 -0.103345910055048 diff --git a/core/src/test/scripts/test_data/data_methylation_invalid_values.txt b/core/src/test/scripts/test_data/data_methylation_invalid_values.txt deleted file mode 100644 index f9fec8efb05..00000000000 --- a/core/src/test/scripts/test_data/data_methylation_invalid_values.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 -ATP2A1 487 0.609122203 n.a. 0.3107555 -SLMAP 7871 0.098467778 0.121041994 0.306626399 -HOXD3 3232 0.622915928 0.464138055 0.640214526 -PANX1 24145 0.11372122 0.102092314 -IMPA2 3613 0.032369146 0.043742109 0.044235925 -RHOC 389 0.364782692 NA 0.501775788 -CCDC88B 283234 0.776356454 NA Na diff --git a/core/src/test/scripts/test_data/data_pd_annotation_missing_col_driver.txt b/core/src/test/scripts/test_data/data_pd_annotation_missing_col_driver.txt deleted file mode 100644 index b7777632cec..00000000000 --- a/core/src/test/scripts/test_data/data_pd_annotation_missing_col_driver.txt +++ /dev/null @@ -1,2 +0,0 @@ -Entrez_Gene_Id Hugo_Symbol SAMPLE_ID cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -219293 ATAD3C TCGA-A1-A0SB-01 Test passenger Class 2 Class annotation diff --git a/core/src/test/scripts/test_data/data_pd_annotation_missing_col_gene_ids.txt b/core/src/test/scripts/test_data/data_pd_annotation_missing_col_gene_ids.txt deleted file mode 100644 index f277e7026ff..00000000000 --- a/core/src/test/scripts/test_data/data_pd_annotation_missing_col_gene_ids.txt +++ /dev/null @@ -1,2 +0,0 @@ -A B SAMPLE_ID cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -a b TCGA-A1-A0SB-01 Putative_Passenger Test passenger Class 2 Class annotation diff --git a/core/src/test/scripts/test_data/data_pd_annotation_missing_col_sampleid.txt b/core/src/test/scripts/test_data/data_pd_annotation_missing_col_sampleid.txt deleted file mode 100644 index 48a00faa61c..00000000000 --- a/core/src/test/scripts/test_data/data_pd_annotation_missing_col_sampleid.txt +++ /dev/null @@ -1,2 +0,0 @@ -Entrez_Gene_Id Hugo_Symbol cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -219293 ATAD3C Putative_Passenger Test passenger Class 2 Class annotation diff --git a/core/src/test/scripts/test_data/data_pd_annotation_missing_fields.txt b/core/src/test/scripts/test_data/data_pd_annotation_missing_fields.txt deleted file mode 100644 index d27069c9c41..00000000000 --- a/core/src/test/scripts/test_data/data_pd_annotation_missing_fields.txt +++ /dev/null @@ -1,8 +0,0 @@ -Entrez_Gene_Id Hugo_Symbol SAMPLE_ID cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation - ACAP3 TCGA-A1-A0SB-01 Putative_Passenger Test passenger Class 2 Class annotation -375790 TCGA-A1-A0SB-01 Putative_Driver Test driver Class 1 Class annotation -219293 ATAD3C TCGA-A1-A0SB-01 Putative_Passenger Test passenger Class 2 Class annotation -219293 ATAD3C TCGA-A1-A0SB-01 wrong value Test passenger Class 2 Class annotation - TCGA-A1-A0SB-01 Putative_Driver Test driver Class 1 Class annotation -55210 ATAD3A TCGA-A1-A0SB-01 Test driver Class 2 Class annotation -83858 ATAC3B TCGA-A1-A0SB-01 Putative_Driver Test driver Class annotation diff --git a/core/src/test/scripts/test_data/data_resource_definition_missing_resourceId.txt b/core/src/test/scripts/test_data/data_resource_definition_missing_resourceId.txt deleted file mode 100644 index 6907dcb3541..00000000000 --- a/core/src/test/scripts/test_data/data_resource_definition_missing_resourceId.txt +++ /dev/null @@ -1,4 +0,0 @@ -RESOURCE_ID DISPLAY_NAME DESCRIPTION RESOURCE_TYPE OPEN_BY_DEFAULT PRIORITY -PATHOLOGY_SLIDE Pathology Slide The pathology slide for the sample SAMPLE TRUE 1 - Patient Notes Notes about the patient PATIENT FALSE 2 -STUDY_SPONSORS Study Sponsors Sponsors of this study STUDY TRUE 3 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_resource_is_not_url.txt b/core/src/test/scripts/test_data/data_resource_is_not_url.txt deleted file mode 100644 index 182b15ef310..00000000000 --- a/core/src/test/scripts/test_data/data_resource_is_not_url.txt +++ /dev/null @@ -1,4 +0,0 @@ -PATIENT_ID SAMPLE_ID RESOURCE_ID URL -TCGA-A2-A04P TCGA-A2-A04P-01 PATHOLOGY_SLIDE not_a_url -TCGA-A1-A0SK TCGA-A1-A0SK-01 PATHOLOGY_SLIDE http://url-to-slide-sample2 -TCGA-A2-A0CM TCGA-A2-A0CM-01 PATHOLOGY_SLIDE http://url-to-slide-sample3 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_resource_patient_duplicate.txt b/core/src/test/scripts/test_data/data_resource_patient_duplicate.txt deleted file mode 100644 index cd805fac4f6..00000000000 --- a/core/src/test/scripts/test_data/data_resource_patient_duplicate.txt +++ /dev/null @@ -1,4 +0,0 @@ -PATIENT_ID RESOURCE_ID URL -TCGA-A2-A04P PATIENT_NOTES http://url-to-patient-notes-patient1 -TCGA-A1-A0SK PATIENT_NOTES http://url-to-patient-notes-patient2 -TCGA-A1-A0SK PATIENT_NOTES http://url-to-patient-notes-patient2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_resource_patient_valid.txt b/core/src/test/scripts/test_data/data_resource_patient_valid.txt deleted file mode 100644 index ad9b93a8229..00000000000 --- a/core/src/test/scripts/test_data/data_resource_patient_valid.txt +++ /dev/null @@ -1,4 +0,0 @@ -PATIENT_ID RESOURCE_ID URL -TCGA-A2-A04P PATIENT_NOTES http://url-to-patient-notes-patient1 -TCGA-A1-A0SK PATIENT_NOTES http://url-to-patient-notes-patient2 -TCGA-A2-A0CM PATIENT_NOTES http://url-to-patient-notes-patient3 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_resource_sample_duplicate.txt b/core/src/test/scripts/test_data/data_resource_sample_duplicate.txt deleted file mode 100644 index 6dd97c15c43..00000000000 --- a/core/src/test/scripts/test_data/data_resource_sample_duplicate.txt +++ /dev/null @@ -1,4 +0,0 @@ -PATIENT_ID SAMPLE_ID RESOURCE_ID URL -TCGA-A2-A04P TCGA-A2-A04P-01 PATHOLOGY_SLIDE http://url-to-slide-sample1 -TCGA-A1-A0SK TCGA-A1-A0SK-01 PATHOLOGY_SLIDE http://url-to-slide-sample2 -TCGA-A1-A0SK TCGA-A1-A0SK-01 PATHOLOGY_SLIDE http://url-to-slide-sample2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_resource_sample_valid.txt b/core/src/test/scripts/test_data/data_resource_sample_valid.txt deleted file mode 100644 index 241b0330d9e..00000000000 --- a/core/src/test/scripts/test_data/data_resource_sample_valid.txt +++ /dev/null @@ -1,4 +0,0 @@ -PATIENT_ID SAMPLE_ID RESOURCE_ID URL -TCGA-A2-A04P TCGA-A2-A04P-01 PATHOLOGY_SLIDE http://url-to-slide-sample1 -TCGA-A1-A0SK TCGA-A1-A0SK-01 PATHOLOGY_SLIDE http://url-to-slide-sample2 -TCGA-A2-A0CM TCGA-A2-A0CM-01 PATHOLOGY_SLIDE http://url-to-slide-sample3 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_resource_study_duplicate.txt b/core/src/test/scripts/test_data/data_resource_study_duplicate.txt deleted file mode 100644 index 8d0b6a3474e..00000000000 --- a/core/src/test/scripts/test_data/data_resource_study_duplicate.txt +++ /dev/null @@ -1,3 +0,0 @@ -RESOURCE_ID URL -STUDY_SPONSORS http://url-to-study-sponsors1 -STUDY_SPONSORS http://url-to-study-sponsors1 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_resource_study_valid.txt b/core/src/test/scripts/test_data/data_resource_study_valid.txt deleted file mode 100644 index 9502811d11a..00000000000 --- a/core/src/test/scripts/test_data/data_resource_study_valid.txt +++ /dev/null @@ -1,3 +0,0 @@ -RESOURCE_ID URL -STUDY_SPONSORS http://url-to-study-sponsors1 -STUDY_SPONSORS http://url-to-study-sponsors2 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/data_rppa_duplicate_entries.txt b/core/src/test/scripts/test_data/data_rppa_duplicate_entries.txt deleted file mode 100644 index 893df603d2e..00000000000 --- a/core/src/test/scripts/test_data/data_rppa_duplicate_entries.txt +++ /dev/null @@ -1,14 +0,0 @@ -Composite.Element.REF TCGA-A1-A0SH-01 TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 -ACACA|ACC1 1.36122710480548 0.137186254715365 -0.850736831131339 0.476558318406069 -ACACA ACACB|ACC_pS79 1.51253243664957 -0.0410770883984889 -0.78191102600407 0.673355464214241 -ATM|ATM 6.4424238579025e-05 0.162264661774981 -0.0400199608807095 0.67302406304931 -AKT1 AKT2 AKT3|Akt 0.27624053370992 0.170399126328659 -0.215370588939701 0.489297723042123 -AKT1 AKT2 AKT3|Akt_pS473 0.507622077164699 -0.426522823583974 -0.578671379537765 -0.113288810121645 -AKT1 AKT2 AKT3|Akt_pT308 0.483702820778609 0.118650367364756 -0.112916054025255 0.487905779396575 -BRAF|B-Raf -0.235040546938807 0.00830643372831408 -0.155035353788789 -0.0797154428759795 -PRKCA|PKC-alpha 0.0605313201064355 -0.297062514778581 0.030489024019046 -0.0633055272803772 -PRKCA|PKC-alpha_pS657 0.628733739571235 -0.057153525235924 -0.125065736911485 -0.281827093937295 -RPS6KB1|p70S6K 0.235811083887643 0.378534764960181 -0.494482450332097 0.296942085106787 -RPS6KB1|p70S6K_pT389 -0.212356191434831 -0.244211928723544 -0.171739079355195 -0.245525561651805 -RPS6KA1|p90RSK_pT359_S363 0.210415326066138 -0.240162443944257 -0.206527782858493 0.0400488718847178 -BRAF|B-Raf -0.235040546938807 0.00830643372831408 spam -0.0797154428759795 diff --git a/core/src/test/scripts/test_data/data_rppa_invalid_values.txt b/core/src/test/scripts/test_data/data_rppa_invalid_values.txt deleted file mode 100644 index dc07072a2c5..00000000000 --- a/core/src/test/scripts/test_data/data_rppa_invalid_values.txt +++ /dev/null @@ -1,22 +0,0 @@ -Composite.Element.REF TCGA-A1-A0SH-01 TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 -ACACA|ACC1 1.36122710480548 0.137186254715365 -0.850736831131339 0.476558318406069 -ACACA ACACB|ACC_pS79 1.51253243664957 spam -0.78191102600407 0.673355464214241 -ATM|ATM 6.4424238579025e-05 0.162264661774981 -0.0400199608807095 0.67302406304931 -AKT1 AKT2 AKT3|Akt 0.27624053370992 0.170399126328659 -0.215370588939701 0.489297723042123 -AKT1 AKT2 AKT3|Akt_pS473 0.507622077164699 -0.426522823583974 -0.578671379537765 -AKT1 AKT2 AKT3|Akt_pT308 0.483702820778609 0.118650367364756 -0.112916054025255 0.487905779396575 -BRAF|B-Raf -0.235040546938807 0.00830643372831408 -0.155035353788789 -0.0797154428759795 -PRKCA |PKC-alpha 0.0605313201064355 0.030489024019046 -0.0633055272803772 -PRKCA |PKC-alpha_pS657 0.628733739571235 -0.057153525235924 -0.125065736911485 -0.281827093937295 -RPS6KB1|p70S6K 0.235811083887643 0.378534764960181 -0.494482450332097 0.296942085106787 -RPS6KB1|p70S6K_pT389 -0.212356191434831 -0.244211928723544 -0.171739079355195 -0.245525561651805 -RPS6KA1|p90RSK_pT359_S363 0.210415326066138 -0.240162443944257 -0.206527782858493 0.0400488718847178 -NA|4E-BP1_pT37 -0.114104647979502 -0.87828636345013 1.28036788460204 0.672807174499066 -NA|ANLN -0.127972588258397 -0.218884812604538 0.211744227394931 0.0705543843061739 -NA|Annexin_I 0.290133279688814 0.119440372723061 2.24786967254382 0.45902641400472 -NA|JNK_pT183_pT185 1.08270021157812 -0.137021266719844 -0.254012706488954 0.15312555349059 -NA|K-Ras -0.0587258292830966 0.0662139306980974 0.184386833697181 -0.213174818220988 -NA|LBK1 0.038942746518176 -0.218499432621757 -0.179208902043151 -0.0833514663806327 -NA|Pea-15 0.22781742581061 0.252008282755791 -0.52225314684524 -0.0805132252684816 -NA|RBM3 0.208176706569049 0.724508564555906 0.155520702849025 0.150595168038915 -NA|SCD1 -0.304785337255741 -1.75378905492014 -0.0475710898169646 -1.53740592357898 diff --git a/core/src/test/scripts/test_data/data_rppa_na_gene.txt b/core/src/test/scripts/test_data/data_rppa_na_gene.txt deleted file mode 100644 index 17e2b287ce4..00000000000 --- a/core/src/test/scripts/test_data/data_rppa_na_gene.txt +++ /dev/null @@ -1,22 +0,0 @@ -Composite.Element.REF TCGA-A1-A0SH-01 TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 -ACACA|ACC1 1.36122710480548 0.137186254715365 -0.850736831131339 0.476558318406069 -ACACA ACACB|ACC_pS79 1.51253243664957 -0.0410770883984889 -0.78191102600407 0.673355464214241 -ATM|ATM 6.4424238579025e-05 0.162264661774981 -0.0400199608807095 0.67302406304931 -AKT1 AKT2 AKT3|Akt 0.27624053370992 0.170399126328659 -0.215370588939701 0.489297723042123 -AKT1 AKT2 AKT3|Akt_pS473 0.507622077164699 -0.426522823583974 -0.578671379537765 -0.113288810121645 -AKT1 AKT2 AKT3|Akt_pT308 0.483702820778609 0.118650367364756 -0.112916054025255 0.487905779396575 -BRAF|B-Raf -0.235040546938807 0.00830643372831408 -0.155035353788789 -0.0797154428759795 -PRKCA|PKC-alpha 0.0605313201064355 -0.297062514778581 0.030489024019046 -0.0633055272803772 -PRKCA|PKC-alpha_pS657 0.628733739571235 -0.057153525235924 -0.125065736911485 -0.281827093937295 -RPS6KB1|p70S6K 0.235811083887643 0.378534764960181 -0.494482450332097 0.296942085106787 -RPS6KB1|p70S6K_pT389 -0.212356191434831 -0.244211928723544 -0.171739079355195 -0.245525561651805 -RPS6KA1|p90RSK_pT359_S363 0.210415326066138 -0.240162443944257 -0.206527782858493 0.0400488718847178 -NA|4E-BP1_pT37 -0.114104647979502 -0.87828636345013 1.28036788460204 0.672807174499066 -NA|ANLN -0.127972588258397 -0.218884812604538 0.211744227394931 0.0705543843061739 -NA|Annexin_I 0.290133279688814 0.119440372723061 2.24786967254382 0.45902641400472 -NA|JNK_pT183_pT185 1.08270021157812 -0.137021266719844 -0.254012706488954 0.15312555349059 -NA|K-Ras -0.0587258292830966 0.0662139306980974 0.184386833697181 -0.213174818220988 -NA|LBK1 0.038942746518176 -0.218499432621757 -0.179208902043151 -0.0833514663806327 -NA|Pea-15 0.22781742581061 0.252008282755791 -0.52225314684524 -0.0805132252684816 -NA|RBM3 0.208176706569049 0.724508564555906 0.155520702849025 0.150595168038915 -NA|SCD1 -0.304785337255741 -1.75378905492014 -0.0475710898169646 -1.53740592357898 diff --git a/core/src/test/scripts/test_data/data_rppa_valid.txt b/core/src/test/scripts/test_data/data_rppa_valid.txt deleted file mode 100644 index cb5c66beff4..00000000000 --- a/core/src/test/scripts/test_data/data_rppa_valid.txt +++ /dev/null @@ -1,13 +0,0 @@ -Composite.Element.REF TCGA-A1-A0SH-01 TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 -ACACA|ACC1 1.36122710480548 0.137186254715365 -0.850736831131339 0.476558318406069 -ACACA ACACB|ACC_pS79 1.51253243664957 -0.0410770883984889 -0.78191102600407 0.673355464214241 -ATM|ATM 6.4424238579025e-05 0.162264661774981 -0.0400199608807095 0.67302406304931 -AKT1 AKT2 AKT3|Akt 0.27624053370992 0.170399126328659 -0.215370588939701 0.489297723042123 -AKT1 AKT2 AKT3|Akt_pS473 0.507622077164699 -0.426522823583974 -0.578671379537765 -0.113288810121645 -AKT1 AKT2 AKT3|Akt_pT308 0.483702820778609 0.118650367364756 -0.112916054025255 0.487905779396575 -BRAF|B-Raf -0.235040546938807 0.00830643372831408 -0.155035353788789 -0.0797154428759795 -PRKCA|PKC-alpha 0.0605313201064355 -0.297062514778581 0.030489024019046 -0.0633055272803772 -PRKCA|PKC-alpha_pS657 0.628733739571235 -0.057153525235924 -0.125065736911485 -0.281827093937295 -RPS6KB1|p70S6K 0.235811083887643 0.378534764960181 -0.494482450332097 0.296942085106787 -RPS6KB1|p70S6K_pT389 -0.212356191434831 -0.244211928723544 -0.171739079355195 -0.245525561651805 -RPS6KA1|p90RSK_pT359_S363 0.210415326066138 -0.240162443944257 -0.206527782858493 0.0400488718847178 diff --git a/core/src/test/scripts/test_data/data_seg_blank_line.seg b/core/src/test/scripts/test_data/data_seg_blank_line.seg deleted file mode 100644 index 881c4e8441f..00000000000 --- a/core/src/test/scripts/test_data/data_seg_blank_line.seg +++ /dev/null @@ -1,54 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SB-01 5 0 180915260 180915 0 -TCGA-A1-A0SB-01 6 0 171115067 0 9001 -TCGA-A1-A0SB-01 7 0 159138663 159138 0 -TCGA-A1-A0SB-01 8 0 146364022 146364 0 -TCGA-A1-A0SB-01 9 0 141213431 141213 0 -TCGA-A1-A0SB-01 10 0 135534747 135534 0 -TCGA-A1-A0SB-01 11 0 135006516 135006 0 -TCGA-A1-A0SB-01 12 0 133851895 133851 0 -TCGA-A1-A0SB-01 13 0 115169878 115169 0 -TCGA-A1-A0SB-01 14 0 107349540 107349 0 -TCGA-A1-A0SB-01 15 0 102531392 102531 0 -TCGA-A1-A0SB-01 16 0 90354753 90354 0 -TCGA-A1-A0SB-01 17 0 24000000 24000 0 -TCGA-A1-A0SB-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SB-01 18 0 78077248 78077 0 -TCGA-A1-A0SB-01 19 0 59128983 59128 0 -TCGA-A1-A0SB-01 20 0 63025520 63025 0 -TCGA-A1-A0SB-01 21 0 48129895 48129 0 -TCGA-A1-A0SB-01 22 0 51304566 51304 0 -TCGA-A1-A0SB-01 X 0 155270560 155270 0 -TCGA-A1-A0SB-01 Y 0 59373566 59373 0 -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SD-01 5 0 180915260 180915 0 -TCGA-A1-A0SD-01 6 0 171115067 171115 0 - -TCGA-A1-A0SD-01 7 0 159138663 159138 0 -TCGA-A1-A0SD-01 8 0 146364022 146364 0 -TCGA-A1-A0SD-01 9 0 141213431 141213 0 -TCGA-A1-A0SD-01 10 0 135534747 135534 0 -TCGA-A1-A0SD-01 11 0 135006516 135006 0 -TCGA-A1-A0SD-01 12 0 133851895 133851 0 -TCGA-A1-A0SD-01 13 0 115169878 115169 0 -TCGA-A1-A0SD-01 14 0 107349540 107349 0 -TCGA-A1-A0SD-01 15 0 102531392 102531 0 -TCGA-A1-A0SD-01 16 0 90354753 90354 0 -TCGA-A1-A0SD-01 17 0 24000000 24000 0 -TCGA-A1-A0SD-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SD-01 18 0 78077248 78077 0 -TCGA-A1-A0SD-01 19 0 59128983 59128 0 -TCGA-A1-A0SD-01 20 0 63025520 63025 0 -TCGA-A1-A0SD-01 21 0 48129895 48129 0 -TCGA-A1-A0SD-01 22 0 51304566 51304 0 -TCGA-A1-A0SD-01 X 0 155270560 155270 0 -TCGA-A1-A0SD-01 Y 0 59373566 59373 0 diff --git a/core/src/test/scripts/test_data/data_seg_end_before_start.seg b/core/src/test/scripts/test_data/data_seg_end_before_start.seg deleted file mode 100644 index 8fa19a88348..00000000000 --- a/core/src/test/scripts/test_data/data_seg_end_before_start.seg +++ /dev/null @@ -1,53 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SB-01 5 0 180915260 180915 0 -TCGA-A1-A0SB-01 6 0 171115067 171115 0 -TCGA-A1-A0SB-01 7 0 159138663 159138 0 -TCGA-A1-A0SB-01 8 0 146364022 146364 0 -TCGA-A1-A0SB-01 9 141213431 0 141213 0 -TCGA-A1-A0SB-01 10 0 135534747 135534 0 -TCGA-A1-A0SB-01 11 0 135006516 135006 0 -TCGA-A1-A0SB-01 12 0 133851895 133851 0 -TCGA-A1-A0SB-01 13 0 115169878 115169 0 -TCGA-A1-A0SB-01 14 0 107349540 107349 0 -TCGA-A1-A0SB-01 15 0 102531392 102531 0 -TCGA-A1-A0SB-01 16 0 90354753 90354 0 -TCGA-A1-A0SB-01 17 0 24000000 24000 0 -TCGA-A1-A0SB-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SB-01 18 0 78077248 78077 0 -TCGA-A1-A0SB-01 19 0 59128983 59128 0 -TCGA-A1-A0SB-01 20 0 63025520 63025 0 -TCGA-A1-A0SB-01 21 0 48129895 48129 0 -TCGA-A1-A0SB-01 22 0 51304566 51304 0 -TCGA-A1-A0SB-01 X 0 155270560 155270 0 -TCGA-A1-A0SB-01 Y 0 59373566 59373 0 -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 91000000 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SD-01 5 0 180915260 180915 0 -TCGA-A1-A0SD-01 6 0 171115067 171115 0 -TCGA-A1-A0SD-01 7 0 159138663 159138 0 -TCGA-A1-A0SD-01 8 0 146364022 146364 0 -TCGA-A1-A0SD-01 9 0 141213431 141213 0 -TCGA-A1-A0SD-01 10 0 135534747 135534 0 -TCGA-A1-A0SD-01 11 0 135006516 135006 0 -TCGA-A1-A0SD-01 12 0 133851895 133851 0 -TCGA-A1-A0SD-01 13 0 115169878 115169 0 -TCGA-A1-A0SD-01 14 0 107349540 107349 0 -TCGA-A1-A0SD-01 15 0 102531392 102531 0 -TCGA-A1-A0SD-01 16 0 90354753 90354 0 -TCGA-A1-A0SD-01 17 0 24000000 24000 0 -TCGA-A1-A0SD-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SD-01 18 0 78077248 78077 0 -TCGA-A1-A0SD-01 19 0 59128983 59128 0 -TCGA-A1-A0SD-01 20 0 63025520 63025 0 -TCGA-A1-A0SD-01 21 0 48129895 48129 0 -TCGA-A1-A0SD-01 22 0 51304566 51304 0 -TCGA-A1-A0SD-01 X 0 155270560 155270 0 -TCGA-A1-A0SD-01 Y 0 59373566 59373 0 diff --git a/core/src/test/scripts/test_data/data_seg_invalid_hg18.seg b/core/src/test/scripts/test_data/data_seg_invalid_hg18.seg deleted file mode 100644 index d324aa34555..00000000000 --- a/core/src/test/scripts/test_data/data_seg_invalid_hg18.seg +++ /dev/null @@ -1,3 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-A1-A0SB-01 1 58953 59871 1 -0.111 -TCGA-A1-A0SB-01 19 59000000 63811651 1 -0.1368 diff --git a/core/src/test/scripts/test_data/data_seg_nonsense_values.seg b/core/src/test/scripts/test_data/data_seg_nonsense_values.seg deleted file mode 100644 index d3065491269..00000000000 --- a/core/src/test/scripts/test_data/data_seg_nonsense_values.seg +++ /dev/null @@ -1,54 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SB-01 5 0 180915260 180915 0 -TCGA-A1-A0SB-01 6 0 171115067 171115 0 -TCGA-A1-A0SB-01 7 0 159138663 159138 0 -TCGA-A1-A0SB-01 8 0 146364022 146364 0 -TCGA-A1-A0SB-01 9 0 141213431 141213 0 -TCGA-A1-A0SB-01 10 0 135534747 135534 0 -TCGA-A1-A0SB-01 11 0 135006516 135006 0 -TCGA-A1-A0SB-01 12 0 133851895 133851 0 -TCGA-A1-A0SB-01 13 0 115169878 115169 0 -TCGA-A1-A0SB-01 14 0 107349540 107349 0 -TCGA-A1-A0SB-01 15 0 102531392 102531 0 -TCGA-A1-A0SB-01 16 0 90354753 90354 0 -TCGA-A1-A0SB-01 17 0 24000000 24000 0 -TCGA-A1-A0SB-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SB-01 18 0 78077248 78077 0 -TCGA-A1-A0SB-01 19 0 59128983 59128 0 -TCGA-A1-A0SB-01 20 0 63025520 63025 0 -TCGA-A1-A0SB-01 21 0 48129895 48129 0 -TCGA-A1-A0SB-01 22 0 51304566 51304 0 -TCGA-A1-A0SB-01 X 0 155270560 155270 0 -TCGA-A1-A0SB-01 Y 0 59373566 59373 0 -TCGA-A1-A0SB-01 M 3.5 16571 16 4j -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SD-01 5 0 180915260 180915 0 -TCGA-A1-A0SD-01 6 0 171115067 171115 0 -TCGA-A1-A0SD-01 7 0 159138663 159138 0 -TCGA-A1-A0SD-01 8 0 146364022 146364 0 -TCGA-A1-A0SD-01 9 0 141213431 141213 0 -TCGA-A1-A0SD-01 10 0 135534747 135534 0 -TCGA-A1-A0SD-01 11 0 135006516 135006 0 -TCGA-A1-A0SD-01 12 0 133851895 133851 0 -TCGA-A1-A0SD-01 13 0 115169878 115169 0 -TCGA-A1-A0SD-01 14 0 107349540 107349 0 -TCGA-A1-A0SD-01 15 0 102531392 102531 0 -TCGA-A1-A0SD-01 16 0 90354753 90354 0 -TCGA-A1-A0SD-01 17 0 24000000 24000 0 -TCGA-A1-A0SD-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SD-01 18 0 78077248 78077 0 -TCGA-A1-A0SD-01 19 0 59128983 59128 0 -TCGA-A1-A0SD-01 20 0 63025520 63025 0 -TCGA-A1-A0SD-01 21 0 48129895 48129 0 -TCGA-A1-A0SD-01 22 0 51304566 51304 0 -TCGA-A1-A0SD-01 X 0 155270560 155270 0 -TCGA-A1-A0SD-01 Y 0 59373566 59373 0 diff --git a/core/src/test/scripts/test_data/data_seg_out_of_bounds.seg b/core/src/test/scripts/test_data/data_seg_out_of_bounds.seg deleted file mode 100644 index b4a753604b4..00000000000 --- a/core/src/test/scripts/test_data/data_seg_out_of_bounds.seg +++ /dev/null @@ -1,53 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SB-01 5 0 180915260 180915 0 -TCGA-A1-A0SB-01 6 0 171115067 171115 0 -TCGA-A1-A0SB-01 7 0 159138663 159138 0 -TCGA-A1-A0SB-01 8 0 146364022 146364 0 -TCGA-A1-A0SB-01 9 0 141213431 141213 0 -TCGA-A1-A0SB-01 10 0 135534747 135534 0 -TCGA-A1-A0SB-01 11 0 135006516 135006 0 -TCGA-A1-A0SB-01 12 0 133851895 133851 0 -TCGA-A1-A0SB-01 13 0 115169878 115169 0 -TCGA-A1-A0SB-01 14 0 107349540 107349 0 -TCGA-A1-A0SB-01 15 0 102531392 102531 0 -TCGA-A1-A0SB-01 16 0 90354753 90354 0 -TCGA-A1-A0SB-01 17 0 24000000 24000 0 -TCGA-A1-A0SB-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SB-01 18 0 78077248 78077 0 -TCGA-A1-A0SB-01 19 0 59128983 59128 0 -TCGA-A1-A0SB-01 20 0 63025520 63025 0 -TCGA-A1-A0SB-01 21 0 48129895 48129 0 -TCGA-A1-A0SB-01 22 0 51304566 51304 0 -TCGA-A1-A0SB-01 X 0 155270560 155270 0 -TCGA-A1-A0SB-01 Y 0 59373566 59373 0 -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SD-01 5 0 180915260 180915 0 -TCGA-A1-A0SD-01 6 0 171115067 171115 0 -TCGA-A1-A0SD-01 7 0 159138663 159138 0 -TCGA-A1-A0SD-01 8 -1 146364022 146364 0 -TCGA-A1-A0SD-01 9 0 141213431 141213 0 -TCGA-A1-A0SD-01 10 0 135534747 135534 0 -TCGA-A1-A0SD-01 11 0 135006516 135006 0 -TCGA-A1-A0SD-01 12 0 133851895 133851 0 -TCGA-A1-A0SD-01 13 0 115169879 115169 0 -TCGA-A1-A0SD-01 14 0 107349540 107349 0 -TCGA-A1-A0SD-01 15 0 102531392 102531 0 -TCGA-A1-A0SD-01 16 0 90354753 90354 0 -TCGA-A1-A0SD-01 17 0 24000000 24000 0 -TCGA-A1-A0SD-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SD-01 18 0 78077248 78077 0 -TCGA-A1-A0SD-01 19 0 59128983 59128 0 -TCGA-A1-A0SD-01 20 0 63025520 63025 0 -TCGA-A1-A0SD-01 21 0 48129895 48129 0 -TCGA-A1-A0SD-01 22 0 51304566 51304 0 -TCGA-A1-A0SD-01 X 0 155270560 155270 0 -TCGA-A1-A0SD-01 Y 0 59373566 59373 0 diff --git a/core/src/test/scripts/test_data/data_seg_valid.seg b/core/src/test/scripts/test_data/data_seg_valid.seg deleted file mode 100644 index 10e621381b1..00000000000 --- a/core/src/test/scripts/test_data/data_seg_valid.seg +++ /dev/null @@ -1,54 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SB-01 5 0 180915260 180915 0 -TCGA-A1-A0SB-01 6 0 171115067 0 9001 -TCGA-A1-A0SB-01 7 0 159138663 159138 0 -TCGA-A1-A0SB-01 8 0 146364022 146364 0 -TCGA-A1-A0SB-01 9 0 141213431 141213 0 -TCGA-A1-A0SB-01 10 0 135534747 135534 0 -TCGA-A1-A0SB-01 11 0 135006516 135006 0 -TCGA-A1-A0SB-01 12 0 133851895 133851 0 -TCGA-A1-A0SB-01 13 0 115169878 115169 0 -TCGA-A1-A0SB-01 14 0 107349540 107349 0 -TCGA-A1-A0SB-01 15 0 102531392 102531 0 -TCGA-A1-A0SB-01 16 0 90354753 90354 0 -TCGA-A1-A0SB-01 17 0 24000000 24000 0 -TCGA-A1-A0SB-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SB-01 18 0 78077248 78077 0 -TCGA-A1-A0SB-01 19 0 59128983 59128 0 -TCGA-A1-A0SB-01 20 0 63025520 63025 0 -TCGA-A1-A0SB-01 21 0 48129895 48129 0 -TCGA-A1-A0SB-01 22 0 51304566 51304 0 -TCGA-A1-A0SB-01 X 0 155270560 155270 0 -TCGA-A1-A0SB-01 23 0 155270560 155270 0 -TCGA-A1-A0SB-01 Y 0 59373566 59373 0 -TCGA-A1-A0SB-01 1 0 249250621 249250 0 -TCGA-A1-A0SB-01 2 0 243199373 243199 0 -TCGA-A1-A0SB-01 3 0 91000000 91000 0 -TCGA-A1-A0SB-01 3 91000000 198022430 107022 -0.9 -TCGA-A1-A0SB-01 4 0 191154276 191154 0 -TCGA-A1-A0SD-01 5 0 180915260 180915 0 -TCGA-A1-A0SD-01 6 0 171115067 171115 0 -TCGA-A1-A0SD-01 7 0 159138663 159138 0 -TCGA-A1-A0SD-01 8 0 146364022 146364 0 -TCGA-A1-A0SD-01 9 0 141213431 141213 0 -TCGA-A1-A0SD-01 10 0 135534747 135534 0 -TCGA-A1-A0SD-01 11 0 135006516 135006 0 -TCGA-A1-A0SD-01 12 0 133851895 133851 0 -TCGA-A1-A0SD-01 13 0 115169878 115169 0 -TCGA-A1-A0SD-01 14 0 107349540 107349 0 -TCGA-A1-A0SD-01 15 0 102531392 102531 0 -TCGA-A1-A0SD-01 16 0 90354753 90354 0 -TCGA-A1-A0SD-01 17 0 24000000 24000 0 -TCGA-A1-A0SD-01 17 24000000 81195210 57195 0 -TCGA-A1-A0SD-01 18 0 78077248 78077 0 -TCGA-A1-A0SD-01 19 0 59128983 59128 0 -TCGA-A1-A0SD-01 20 0 63025520 63025 0 -TCGA-A1-A0SD-01 21 0 48129895 48129 0 -TCGA-A1-A0SD-01 22 0 51304566 51304 0 -TCGA-A1-A0SD-01 X 0 155270560 155270 0 -TCGA-A1-A0SD-01 Y 0 59373566 59373 0 diff --git a/core/src/test/scripts/test_data/data_seg_wrong_order.txt b/core/src/test/scripts/test_data/data_seg_wrong_order.txt deleted file mode 100644 index afe87108d39..00000000000 --- a/core/src/test/scripts/test_data/data_seg_wrong_order.txt +++ /dev/null @@ -1,50 +0,0 @@ -chrom ID loc.start loc.end num.mark seg.mean -TEST-PAT1-SAMPLE1 1 13684348 13833633 17096 1.16 -TEST-PAT1-SAMPLE1 1 13833728 15413875 17096 -1.57 -TEST-PAT1-SAMPLE1 1 15416808 16121303 17096 1.32 -TEST-PAT1-SAMPLE1 1 16124160 16764830 17096 1.16 -TEST-PAT1-SAMPLE1 1 16769801 18101891 17096 1.09 -TEST-PAT1-SAMPLE1 1 18104300 18657376 17096 0.7 -TEST-PAT1-SAMPLE1 1 18658403 25343371 17096 -0.2 -TEST-PAT1-SAMPLE1 1 25346379 27014651 17096 -0.52 -TEST-PAT1-SAMPLE1 1 27021371 27182923 17096 1.76 -TEST-PAT1-SAMPLE1 1 27182944 27339665 17096 -1.58 -TEST-PAT1-SAMPLE1 1 27340606 29923280 17096 0.34 -TEST-PAT1-SAMPLE1 2 13684348 13833633 17096 1.15 -TEST-PAT1-SAMPLE1 2 13833728 15413875 17096 -1.38 -TEST-PAT1-SAMPLE1 2 15416808 16121303 17096 1.72 -TEST-PAT1-SAMPLE1 2 16124160 16764830 17096 0.81 -TEST-PAT1-SAMPLE1 2 16769801 18101891 17096 1.89 -TEST-PAT1-SAMPLE1 2 18104300 18657376 17096 -0.14 -TEST-PAT1-SAMPLE1 2 18658403 25343371 17096 0.61 -TEST-PAT1-SAMPLE1 2 25346379 27014651 17096 1.98 -TEST-PAT1-SAMPLE1 2 27021371 27182923 17096 1.61 -TEST-PAT1-SAMPLE1 2 27182944 27339665 17096 -1.09 -TEST-PAT1-SAMPLE1 2 27340606 29923280 17096 -0.91 -TEST-PAT1-SAMPLE1 3 13684348 13833633 17096 1.31 -TEST-PAT1-SAMPLE1 3 13833728 15413875 17096 1.85 -TEST-PAT1-SAMPLE1 3 15416808 16121303 17096 -1.72 -TEST-PAT1-SAMPLE1 3 16124160 16764830 17096 0.87 -TEST-PAT1-SAMPLE1 3 16769801 18101891 17096 -1.61 -TEST-PAT1-SAMPLE1 3 18104300 18657376 17096 0.1 -TEST-PAT1-SAMPLE1 3 18658403 25343371 17096 0.35 -TEST-PAT1-SAMPLE1 3 25346379 27014651 17096 -0.58 -TEST-PAT1-SAMPLE1 3 27021371 27182923 17096 0.75 -TEST-PAT1-SAMPLE1 3 27182944 27339665 17096 1.86 -TEST-PAT1-SAMPLE1 3 27340606 29923280 17096 -0.21 -TEST-PAT1-SAMPLE1 4 13684348 13833633 17096 1.27 -TEST-PAT1-SAMPLE1 4 13833728 15413875 17096 0.36 -TEST-PAT1-SAMPLE1 4 15416808 16121303 17096 0.38 -TEST-PAT1-SAMPLE1 4 16124160 16764830 17096 1.67 -TEST-PAT1-SAMPLE1 4 16769801 18101891 17096 -0.84 -TEST-PAT1-SAMPLE1 4 18104300 18657376 17096 1.15 -TEST-PAT1-SAMPLE1 4 18658403 25343371 17096 0.9 -TEST-PAT1-SAMPLE1 4 25346379 27014651 17096 0.85 -TEST-PAT1-SAMPLE1 4 27021371 27182923 17096 -1.83 -TEST-PAT1-SAMPLE1 4 27182944 27339665 17096 -0.06 -TEST-PAT1-SAMPLE1 4 27340606 29923280 17096 1.82 -TEST-PAT1-SAMPLE1 5 13684348 13833633 17096 -0.21 -TEST-PAT1-SAMPLE1 5 13833728 15413875 17096 -0.3 -TEST-PAT1-SAMPLE1 5 15416808 16121303 17096 1.11 -TEST-PAT1-SAMPLE1 5 16124160 16764830 17096 1.8 -TEST-PAT1-SAMPLE1 5 16769801 18101891 17096 1.65 diff --git a/core/src/test/scripts/test_data/data_structural_variants_duplicate_entry.txt b/core/src/test/scripts/test_data/data_structural_variants_duplicate_entry.txt deleted file mode 100644 index 944b7b45cce..00000000000 --- a/core/src/test/scripts/test_data/data_structural_variants_duplicate_entry.txt +++ /dev/null @@ -1,9 +0,0 @@ -Sample_Id Site1_Entrez_Gene_Id Site1_Hugo_Symbol Site1_Ensembl_Transcript_Id Site1_Exon Site1_Chromosome Site1_Position Site1_Description Site2_Entrez_Gene_Id Site2_Hugo_Symbol Site2_Ensembl_Transcript_Id Site2_Exon Site2_Chromosome Site2_Position Site2_Description Site2_Effect_On_Frame NCBI_Build DNA_Support RNA_Support Normal_Read_Count Tumor_Read_Count Normal_Variant_Count Tumor_Variant_Count Normal_Paired_End_Read_Count Tumor_Paired_End_Read_Count Normal_Split_Read_Count Tumor_Split_Read_Count Annotation Breakpoint_Type Center Connection_Type Event_Info Class SV_Length Comments External_Annotation cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation SV_Status MyNamespace.column1 MyNamespace.column2 -TCGA-A2-A04P-01 NA KIAA1549 ENST00000242365 15 7 138536968 KIAA1549-BRAF.K16B10.COSF509_1 NA BRAF ENST00000442448 10 7 140482957 KIAA1549-BRAF.K16B10.COSF509_2 NA GRCh37 no yes NA 1000 NA 900 NA NA NA NA KIAA1549-BRAF.K16B10.COSF509 NA NA NA Fusion NA NA Gain-of-Function COSMIC:COSF509 NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA NCOA4 ENST00000242365 7 10 51582939 NCOA4-RET.N7R12_1 NA RET ENST00000340058 12 10 43612031 NCOA4-RET.N7R12_2 NA GRCh37 no yes NA 1001 NA 800 NA NA NA NA NCOA4-RET.N7R1 NA NA NA Fusion NA NA Gain-of-Function NA NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA EML4 ENST00000318522 6 2 42492091 EML4-ALK.E6bA20.AB374362_1 NA ALK ENST00000389048 20 2 29446394 EML4-ALK.E6bA20.AB374362_2 NA GRCh37 no yes NA 1002 NA 700 NA NA NA NA EML4-ALK.E6bA20.AB374362 NA NA NA Fusion NA NA Gain-of-Function GENBANK:AB374362 NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA TMPRSS2 ENST00000332149 1 21 42880007 TMPRSS2-ERG.T1E2.COSF23.1_1 NA ERG ENST00000442448 2 21 39956869 TMPRSS2-ERG.T1E2.COSF23.1_2 NA GRCh37 no yes NA 1003 NA 600 NA NA NA NA TMPRSS2-ERG.T1E2.COSF23.1 NA NA NA Fusion NA NA Gain-of-Function COSMIC:COSF23 NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA EGFR ENST00000275493 3 7 55087058 EGFR-EGFR.E1E8.DelPositive.1_1 NA EGFR ENST00000275493 8 7 55223522 EGFR-EGFR.E1E8.DelPositive.1_2 NA GRCh37 no yes NA 1004 NA 500 NA NA NA NA EGFR-EGFR.E1E8.DelPositive NA NA NA Fusion NA NA NA NA NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA ALK ENST00000389048 11 2 29497964 ALK-PTPN3.A11P3_1 NA PTPN3 ENST00000374541 3 9 112219679 ALK-PTPN3.A11P3_2 NA GRCh37 no yes NA 1005 NA 400 NA NA NA NA ALK-PTPN3.A11P3 NA NA NA Fusion NA NA NA NA NA NA NA NA SOMATIC -TCGA-A1-A0SB-01 NA EML4 ENST00000318522 13 2 42522656 EML4-ALK.E13A20.AB462411_1 NA ALK ENST00000389048 2 2 29446335 EML4-ALK.E13A20.AB462411_2 NA GRCh37 no yes NA 1006 NA 300 NA NA NA NA EML4-ALK.E13A20 NA NA NA Fusion NA NA Gain-of-Function GENBANK:AB462411 NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA EML4 ENST00000318522 6 2 42492091 EML4-ALK.E6bA20.AB374362_1 NA ALK ENST00000389048 20 2 29446394 EML4-ALK.E6bA20.AB374362_2 NA GRCh37 no yes NA 1002 NA 700 NA NA NA NA EML4-ALK.E6bA20.AB374362 NA NA NA Fusion NA NA Gain-of-Function GENBANK:AB374362 NA NA NA NA SOMATIC diff --git a/core/src/test/scripts/test_data/data_structural_variants_missing_columns.txt b/core/src/test/scripts/test_data/data_structural_variants_missing_columns.txt deleted file mode 100644 index 25c3ae83377..00000000000 --- a/core/src/test/scripts/test_data/data_structural_variants_missing_columns.txt +++ /dev/null @@ -1,8 +0,0 @@ -Sample_Id Site1_Entrez_Gene_Id Site1_Hugo_Symbol Site1_Chromosome Site1_Position Site1_Description Site2_Chromosome Site2_Position Site2_Description Site2_Effect_On_Frame NCBI_Build DNA_Support RNA_Support Normal_Read_Count Tumor_Read_Count Normal_Variant_Count Tumor_Variant_Count Normal_Paired_End_Read_Count Tumor_Paired_End_Read_Count Normal_Split_Read_Count Tumor_Split_Read_Count Annotation Breakpoint_Type Center Connection_Type Event_Info Class SV_Length Comments External_Annotation cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -TCGA-A2-A04P-01 NA KIAA1549 7 138536968 KIAA1549-BRAF.K16B10.COSF509_1 7 140482957 KIAA1549-BRAF.K16B10.COSF509_2 NA GRCh37 no yes NA 1000 NA 900 NA NA NA NA KIAA1549-BRAF.K16B10.COSF509 NA NA NA Fusion NA NA Gain-of-Function COSMIC:COSF509 NA NA NA NA -TCGA-A2-A04P-01 NA NCOA4 10 51582939 NCOA4-RET.N7R12_1 10 43612031 NCOA4-RET.N7R12_2 NA GRCh37 no yes NA 1001 NA 800 NA NA NA NA NCOA4-RET.N7R1 NA NA NA Fusion NA NA Gain-of-Function NA NA NA NA NA -TCGA-A2-A04P-01 NA EML4 2 42492091 EML4-ALK.E6bA20.AB374362_1 2 29446394 EML4-ALK.E6bA20.AB374362_2 NA GRCh37 no yes NA 1002 NA 700 NA NA NA NA EML4-ALK.E6bA20.AB374362 NA NA NA Fusion NA NA Gain-of-Function GENBANK:AB374362 NA NA NA NA -TCGA-A2-A04P-01 NA TMPRSS2 21 42880007 TMPRSS2-ERG.T1E2.COSF23.1_1 21 39956869 TMPRSS2-ERG.T1E2.COSF23.1_2 NA GRCh37 no yes NA 1003 NA 600 NA NA NA NA TMPRSS2-ERG.T1E2.COSF23.1 NA NA NA Fusion NA NA Gain-of-Function COSMIC:COSF23 NA NA NA NA -TCGA-A2-A04P-01 NA EGFR 7 55087058 EGFR-EGFR.E1E8.DelPositive.1_1 7 55223522 EGFR-EGFR.E1E8.DelPositive.1_2 NA GRCh37 no yes NA 1004 NA 500 NA NA NA NA EGFR-EGFR.E1E8.DelPositive NA NA NA Fusion NA NA NA NA NA NA NA NA -TCGA-A2-A04P-01 NA ALK 2 29497964 ALK-PTPN3.A11P3_1 9 112219679 ALK-PTPN3.A11P3_2 NA GRCh37 no yes NA 1005 NA 400 NA NA NA NA ALK-PTPN3.A11P3 NA NA NA Fusion NA NA NA NA NA NA NA NA -TCGA-A1-A0SB-01 NA EML4 2 42522656 EML4-ALK.E13A20.AB462411_1 2 29446335 EML4-ALK.E13A20.AB462411_2 NA GRCh37 no yes NA 1006 NA 300 NA NA NA NA EML4-ALK.E13A20 NA NA NA Fusion NA NA Gain-of-Function GENBANK:AB462411 NA NA NA NA diff --git a/core/src/test/scripts/test_data/data_structural_variants_missing_values.txt b/core/src/test/scripts/test_data/data_structural_variants_missing_values.txt deleted file mode 100644 index ffe15ad4490..00000000000 --- a/core/src/test/scripts/test_data/data_structural_variants_missing_values.txt +++ /dev/null @@ -1,8 +0,0 @@ -Sample_Id Site1_Entrez_Gene_Id Site1_Hugo_Symbol Site1_Ensembl_Transcript_Id Site1_Region_Number Site1_Chromosome Site1_Position Site1_Description Site2_Entrez_Gene_Id Site2_Hugo_Symbol Site2_Ensembl_Transcript_Id Site2_Region_Number Site2_Chromosome Site2_Position Site2_Description Site2_Effect_On_Frame NCBI_Build DNA_Support RNA_Support Normal_Read_Count Tumor_Read_Count Normal_Variant_Count Tumor_Variant_Count Normal_Paired_End_Read_Count Tumor_Paired_End_Read_Count Normal_Split_Read_Count Tumor_Split_Read_Count Annotation Breakpoint_Type Center Connection_Type Event_Info Class SV_Length Comments External_Annotation cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation SV_Status MyNamespace.column1 MyNamespace.column2 -TCGA-A2-A04P-01 NA KIAA1549 ENST00000242365 15 7 138536968 KIAA1549-BRAF.K16B10.COSF509_1 NA BRAF 10 7 140482957 KIAA1549-BRAF.K16B10.COSF509_2 NA GRCh37 no yes NA 1000 NA 900 NA NA NA NA KIAA1549-BRAF.K16B10.COSF509 NA NA NA Fusion NA NA Gain-of-Function COSMIC:COSF509 NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA 7 10 51582939 NCOA4-RET.N7R12_1 NA ENST00000340058 12 10 43612031 NCOA4-RET.N7R12_2 NA GRCh37 no yes NA 1001 NA 800 NA NA NA NA NCOA4-RET.N7R1 NA NA NA Fusion NA NA Gain-of-Function NA NA NA NA NA -TCGA-A2-A04P-01 NA EML4 ENST00000318522 6 2 42492091 EML4-ALK.E6bA20.AB374362_1 NA ALK ENST00000389048 20 2 29446394 EML4-ALK.E6bA20.AB374362_2 NA GRCh37 no yes NA 1002 NA 700 NA NA NA NA EML4-ALK.E6bA20.AB374362 NA NA NA Fusion NA NA Gain-of-Function GENBANK:AB374362 NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA TMPRSS2 ENST00000332149 1 21 42880007 TMPRSS2-ERG.T1E2.COSF23.1_1 NA ERG ENST00000442448 2 21 39956869 TMPRSS2-ERG.T1E2.COSF23.1_2 NA GRCh37 no yes NA 1003 NA 600 NA NA NA NA TMPRSS2-ERG.T1E2.COSF23.1 NA NA NA Fusion NA NA Gain-of-Function COSMIC:COSF23 NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA EGFR ENST00000275493 7 55087058 EGFR-EGFR.E1E8.DelPositive.1_1 NA EGFR ENST00000275493 8 7 55223522 EGFR-EGFR.E1E8.DelPositive.1_2 NA GRCh37 no yes NA 1004 NA 500 NA NA NA NA EGFR-EGFR.E1E8.DelPositive NA NA NA Fusion NA NA NA NA NA NA NA NA SOMATIC -TCGA-A2-A04P-01 NA ALK ENST00000389048 11 2 29497964 ALK-PTPN3.A11P3_1 NA PTPN3 ENST00000374541 3 9 112219679 ALK-PTPN3.A11P3_2 NA GRCh37 no yes NA 1005 NA 400 NA NA NA NA ALK-PTPN3.A11P3 NA NA NA Fusion NA NA NA NA NA NA NA NA SOMATIC -TCGA-A1-A0SB-01 ENST00000318522 13 2 42522656 EML4-ALK.E13A20.AB462411_1 ENST00000389048 2 29446335 EML4-ALK.E13A20.AB462411_2 NA GRCh37 no yes NA 1006 NA 300 NA NA NA NA EML4-ALK.E13A20 NA NA NA Fusion NA NA Gain-of-Function GENBANK:AB462411 NA NA NA NA SOMATIC diff --git a/core/src/test/scripts/test_data/data_timeline_invalid_start_date.txt b/core/src/test/scripts/test_data/data_timeline_invalid_start_date.txt deleted file mode 100644 index 8d770442f4b..00000000000 --- a/core/src/test/scripts/test_data/data_timeline_invalid_start_date.txt +++ /dev/null @@ -1,4 +0,0 @@ -PATIENT_ID START_DATE STOP_DATE EVENT_TYPE -P-TEST-PATIENT 85 TREATMENT -P-TEST-PATIENT2 NA 85 TREATMENT -P-TEST-PATIENT2 17 85 TREATMENT diff --git a/core/src/test/scripts/test_data/data_unique_column_test.txt b/core/src/test/scripts/test_data/data_unique_column_test.txt deleted file mode 100644 index e1802031664..00000000000 --- a/core/src/test/scripts/test_data/data_unique_column_test.txt +++ /dev/null @@ -1,3 +0,0 @@ -id name TCGA-A1-A0SB-01 -ID1 name1 value1 -ID2 name1 value2 diff --git a/core/src/test/scripts/test_data/meta_study/invalid_pmid_values/meta_study.txt b/core/src/test/scripts/test_data/meta_study/invalid_pmid_values/meta_study.txt deleted file mode 100644 index 6e7f9f592bf..00000000000 --- a/core/src/test/scripts/test_data/meta_study/invalid_pmid_values/meta_study.txt +++ /dev/null @@ -1,9 +0,0 @@ -type_of_cancer: brca-es0 -cancer_study_identifier: study_es_0 -name: Test study es_0 -description: Test study es_0 -citation: Cell 2018 -pmid: 29625048, 29596782, 29622463A, 29617662 29625055, 29625050 -groups: PUBLIC;GDAC;SU2C-PI3K -add_global_case_list: true -tags_file: study_tags.yml diff --git a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/meta_cna_log2.txt b/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/meta_cna_log2.txt deleted file mode 100644 index 6af15cb4cb6..00000000000 --- a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/meta_cna_log2.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: LOG2-VALUE -stable_id: log2CNA -show_profile_in_analysis_tab: true -profile_description: Log2 copy-number values for each gene (from Affymetrix SNP6). -profile_name: Log2 copy-number values -data_filename: data_cna_log2.txt diff --git a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/meta_study.txt b/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/meta_study.txt deleted file mode 100644 index 38f4029220f..00000000000 --- a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/meta_study.txt +++ /dev/null @@ -1,9 +0,0 @@ -type_of_cancer: brca-es0 -cancer_study_identifier: study_es_0 -name: Test study es_0 -description: Test study es_0 -citation: Cell 2018 -pmid: 29625048,29596782,29622463,29617662,29625055,29625050 -groups: PUBLIC;GDAC;SU2C-PI3K -add_global_case_list: true -tags_file: study_tags.yml diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_absence_custom_annotation_columns_when_custom_values_columns.maf b/core/src/test/scripts/test_data/mutations/data_mutations_absence_custom_annotation_columns_when_custom_values_columns.maf deleted file mode 100644 index deea3018bc4..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_absence_custom_annotation_columns_when_custom_values_columns.maf +++ /dev/null @@ -1,4 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.pdb SWISSPROT cbp_driver cbp_driver_tiers -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N PGBM_HUMAN Putative_Passenger test1 -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I CSMD2_HUMAN Putative_Driver test2 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L CLSPN_HUMAN Putative_Passenger test2 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_absence_custom_values_columns_when_custom_annotation_columns.maf b/core/src/test/scripts/test_data/mutations/data_mutations_absence_custom_values_columns_when_custom_annotation_columns.maf deleted file mode 100644 index e8071969126..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_absence_custom_values_columns_when_custom_annotation_columns.maf +++ /dev/null @@ -1,4 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.pdb SWISSPROT cbp_driver_annotation cbp_driver_tiers_annotation -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N PGBM_HUMAN Passenger mutation test1 -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I CSMD2_HUMAN Driver mutation test2 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L CLSPN_HUMAN Passenger mutation test2 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_check_special_cases_allele.maf b/core/src/test/scripts/test_data/mutations/data_mutations_check_special_cases_allele.maf deleted file mode 100644 index 0a0fff863ab..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_check_special_cases_allele.maf +++ /dev/null @@ -1,7 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Consequence Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer t_ref_count t_alt_count n_ref_count n_alt_count HGVSc HGVSp HGVSp_Short Transcript_ID RefSeq Protein_position Codons Hotspot ALLELE_NUM n_depth ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT MA:link.PDB Feature CLIN_SIG ONCOTATOR_DBSNP_RS Gene t_depth MA:FIS ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT DISTANCE SYMBOL_SOURCE ONCOTATOR_PROTEIN_POS_END Existing_variation SYMBOL AA_MAF HIGH_INF_POS ASN_MAF ONCOTATOR_VARIANT_CLASSIFICATION BIOTYPE MA:link.var AFR_MAF DOMAINS MOTIF_SCORE_CHANGE ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_TRANSCRIPT_CHANGE Amino_acids ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT EA_MAF Allele MA:FImpact cDNA_position ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT MA:link.MSA SIFT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT INTRON ONCOTATOR_EXON_AFFECTED AMR_MAF ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START CANONICAL MOTIF_NAME GMAF MOTIF_POS CDS_position ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_COSMIC_OVERLAPPING MA:protein.change ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_CODON_CHANGE ONCOTATOR_PROTEIN_CHANGE ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_GENE_SYMBOL EUR_MAF Feature_type PolyPhen ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ENSP ONCOTATOR_REFSEQ_PROT_ID CCDS EXON ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT Exon_Number ONCOTATOR_UNIPROT_ACCESSION PUBMED -ZNF777 27153 genome.wustl.edu;unc.edu GRCh37 7 149129243 149129243 + missense_variant Missense_Mutation SNP G G G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10B-01D-A142-09 24 8 21 0 ENST00000247930.4:c.2120C>T p.Ser707Leu p.S707L ENST00000247930 NM_015694.2 707 tCg/tTg 0 1 . c.2120C>T getma.org/pdb.php?prot=ZN777_HUMAN&from=687&to=707&var=S707L ENST00000247930 ENSG00000196453 . 2.42 NM_015694 c.(2119-2121)TCG>TTG HGNC 707 ZNF777 Missense_Mutation protein_coding getma.org/?cm=var&var=hg19,7,149129243,G,A&fts=all Pfam_domain:PF00096,PROSITE_profiles:PS50157,SMART_domains:SM00355,Superfamily_domains:SSF57667 ZN777_HUMAN c.2120C>T S/L NP_056509 A medium 2444/3233 707 p.S707L getma.org/?cm=msa&ty=f&p=ZN777_HUMAN&rb=657&re=737&var=S707L deleterious(0.01) ZNF777 6 Q9ULD5 707 YES 2120/2496 S707L NM_015694 c.(2119-2121)TCG>TTG p.S707L Missense_Mutation 6 ZNF777 Transcript probably_damaging(0.999) ZN777_HUMAN ENSP00000247930 NP_056509 CCDS43675.1 6-Jun 707 6-Jun Q9ULD5 -MYB 4602 genome.wustl.edu GRCh37 6 135507043 135507044 + frameshift_variant Frame_Shift_Ins INS AAAAC AAAAC CAAAAT TCGA-A1-A0SB-01 TCGA-A1-A0SB-10B-01D-A142-09 36 4 50 0 ENST00000367814.4:c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 NM_001161659.1 9 ata/atAa 0 1 . c.26_27insA ENST00000341911 ENSG00000118513 . NM_001130173 c.(25-27)ATAfs HGNC 9 COSM1487247,COSM1487248 MYB Frame_Shift_Ins protein_coding MYB_HUMAN c.26_27insA NP_001123645 A 225-226/3672 9 p.I9fs MYB 2 P10242 9 YES 26-27/2286 NM_005375 c.(25-27)ATAfs p.I9fs Frame_Shift_Ins 2 MYB Transcript MYB_HUMAN ENSP00000339992 NP_005366 CCDS47481.1 16-Feb 9 16-Feb P10242 -SLC6A9 6536 genome.wustl.edu;unc.edu GRCh37 1 44476442 44476442 + missense_variant Missense_Mutation DEL C T T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10B-01D-A142-09 44 19 72 0 ENST00000360584.2:c.362G>A p.Gly121Asp p.G121D ENST00000360584 NM_201649.3 121 gGc/gAc 0 1 . c.362G>A getma.org/pdb.php?prot=SC6A9_HUMAN&from=100&to=635&var=G121D ENST00000360584 ENSG00000196517 . 3.83 NM_201649 c.(361-363)GGC>GAC HGNC 121 SLC6A9 Missense_Mutation protein_coding getma.org/?cm=var&var=hg19,1,44476442,C,T&fts=all Transmembrane_helices:Tmhmm,Prints_domain:PR00176,Pfam_domain:PF00209,PROSITE_profiles:PS50267 SC6A9_HUMAN c.362G>A G/D NP_964012 T high 554/2330 121 p.G121D getma.org/?cm=msa&ty=f&p=SC6A9_HUMAN&rb=100&re=635&var=G121D deleterious(0) SLC6A9 3 P48067 121 YES 362/2121 G121D NM_201649 c.(361-363)GGC>GAC p.G121D Missense_Mutation 3 SLC6A9 Transcript probably_damaging(1) SC6A9_HUMAN ENSP00000353791 NP_964012 CCDS41317.1 14-Mar 121 14-Mar P48067 -ZNF777 27153 genome.wustl.edu;unc.edu GRCh37 7 149129243 149129243 + missense_variant Missense_Mutation ONP GGGG GGGG GGGGG TCGA-A1-A0SB-01 TCGA-A1-A0SB-10B-01D-A142-09 24 8 21 0 ENST00000247930.4:c.2120C>T p.Ser707Leu p.S707L ENST00000247930 NM_015694.2 707 tCg/tTg 0 1 . c.2120C>T getma.org/pdb.php?prot=ZN777_HUMAN&from=687&to=707&var=S707L ENST00000247930 ENSG00000196453 . 2.42 NM_015694 c.(2119-2121)TCG>TTG HGNC 707 ZNF777 Missense_Mutation protein_coding getma.org/?cm=var&var=hg19,7,149129243,G,A&fts=all Pfam_domain:PF00096,PROSITE_profiles:PS50157,SMART_domains:SM00355,Superfamily_domains:SSF57667 ZN777_HUMAN c.2120C>T S/L NP_056509 A medium 2444/3233 707 p.S707L getma.org/?cm=msa&ty=f&p=ZN777_HUMAN&rb=657&re=737&var=S707L deleterious(0.01) ZNF777 6 Q9ULD5 707 YES 2120/2496 S707L NM_015694 c.(2119-2121)TCG>TTG p.S707L Missense_Mutation 6 ZNF777 Transcript probably_damaging(0.999) ZN777_HUMAN ENSP00000247930 NP_056509 CCDS43675.1 6-Jun 707 6-Jun Q9ULD5 -MYB 4602 genome.wustl.edu GRCh37 6 135507043 135507044 + frameshift_variant Frame_Shift_Ins INS G G CA TCGA-A1-A0SB-01 TCGA-A1-A0SB-10B-01D-A142-09 36 4 50 0 ENST00000367814.4:c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 NM_001161659.1 9 ata/atAa 0 1 . c.26_27insA ENST00000341911 ENSG00000118513 . NM_001130173 c.(25-27)ATAfs HGNC 9 COSM1487247,COSM1487248 MYB Frame_Shift_Ins protein_coding MYB_HUMAN c.26_27insA NP_001123645 A 225-226/3672 9 p.I9fs MYB 2 P10242 9 YES 26-27/2286 NM_005375 c.(25-27)ATAfs p.I9fs Frame_Shift_Ins 2 MYB Transcript MYB_HUMAN ENSP00000339992 NP_005366 CCDS47481.1 16-Feb 9 16-Feb P10242 -MYB 4602 genome.wustl.edu GRCh37 6 135507043 135507044 + frameshift_variant Frame_Shift_Ins INS CA CA G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10B-01D-A142-09 36 4 50 0 ENST00000367814.4:c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 NM_001161659.1 9 ata/atAa 0 1 . c.26_27insA ENST00000341911 ENSG00000118513 . NM_001130173 c.(25-27)ATAfs HGNC 9 COSM1487247,COSM1487248 MYB Frame_Shift_Ins protein_coding MYB_HUMAN c.26_27insA NP_001123645 A 225-226/3672 9 p.I9fs MYB 2 P10242 9 YES 26-27/2286 NM_005375 c.(25-27)ATAfs p.I9fs Frame_Shift_Ins 2 MYB Transcript MYB_HUMAN ENSP00000339992 NP_005366 CCDS47481.1 16-Feb 9 16-Feb P10242 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_custom_tiers_column_more_than_50_characters.maf b/core/src/test/scripts/test_data/mutations/data_mutations_custom_tiers_column_more_than_50_characters.maf deleted file mode 100644 index 8a1b0401232..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_custom_tiers_column_more_than_50_characters.maf +++ /dev/null @@ -1,4 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.pdb SWISSPROT cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N PGBM_HUMAN Putative_Passenger Passenger mutation 012345678901234567890123456789012345678901234567890 test1 -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I CSMD2_HUMAN Putative_Driver Driver mutation 01234567890123456789012345678901234567890123456789 test2 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L CLSPN_HUMAN Putative_Passenger Passenger mutation test2 test2 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_empty_custom_annotation_fields.maf b/core/src/test/scripts/test_data/mutations/data_mutations_empty_custom_annotation_fields.maf deleted file mode 100644 index 3681b139153..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_empty_custom_annotation_fields.maf +++ /dev/null @@ -1,7 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.pdb SWISSPROT cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087dwerg Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N PGBM_HUMAN Putative_Passenger Passenger Mutation -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I CSMD2_HUMAN Putative_Passenger Putative Mutation Tier 2 Tier 2 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L CLSPN_HUMAN Putative_Driver Driver Mutation Tier 3 -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I CSMD2_HUMAN Putative_Passenger Putative Mutation Tier 2 Tier 2 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L CLSPN_HUMAN Putative_Driver Tier 3 Tier 3 -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087dwerg Splice_Site D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N PGBM_HUMAN Putative_Passenger Passenger Mutation Tier 1 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_norm_samples.maf b/core/src/test/scripts/test_data/mutations/data_mutations_invalid_norm_samples.maf deleted file mode 100644 index f5e0c30b686..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_norm_samples.maf +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION HGVSp_Short SWISSPROT ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU Protein_position amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -A1CF 29974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0RS-01 TCGA-B6-A0RS-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.D424E Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 0.345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 p.D424E 0.768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.A195V Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595937 52595937 + Silent SNP G G A novel unknown TCGA-BH-A18P-01 TCGA-BH-A18P-11 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I167I Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Silent p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 NA NA NA NA NA NA 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed silent c.501 p.I167 0.615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A2M 2 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-BH-A18H-01 TCGA-BH-A18H-10 T T NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.Y1055C P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 0.143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9242995 9242995 + Silent SNP G G A novel unknown TCGA-C8-A138-01 TCGA-C8-A138-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.N851N P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 NA NA NA NA NA NA 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2553 p.N851 0.003 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9246090 9246090 + Silent SNP C C T novel unknown TCGA-A2-A0EY-01 TCGA-A2-A0EY-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.E737E P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 NA NA NA NA NA NA 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A8-A08G-01 TCGA-A8-A08G-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Nonsense_Mutation p.R586* P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 0.003 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_swissprot.maf b/core/src/test/scripts/test_data/mutations/data_mutations_invalid_swissprot.maf deleted file mode 100644 index aff874f34f7..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_swissprot.maf +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION HGVSp_Short SWISSPROT ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU Protein_position amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -A1CF 29974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0RS-01 TCGA-B6-A0RS-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.D424E P99999 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 0.345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 p.D424E 0.768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.A195V A1CF_HUMAN NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595937 52595937 + Silent SNP G G A novel unknown TCGA-BH-A18P-01 TCGA-BH-A18P-11 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I167I P99999 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Silent p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 NA NA NA NA NA NA 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed silent c.501 p.I167 0.615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A2M 2 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-BH-A18H-01 TCGA-BH-A18H-10 T T NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.Y1055C P99999,Z9ZZZ9ZZZ9 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 0.143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9242995 9242995 + Silent SNP G G A novel unknown TCGA-C8-A138-01 TCGA-C8-A138-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.N851N P99999 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 NA NA NA NA NA NA 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2553 p.N851 0.003 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9246090 9246090 + Silent SNP C C T novel unknown TCGA-A2-A0EY-01 TCGA-A2-A0EY-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.E737E P99999 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 NA NA NA NA NA NA 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A8-A08G-01 TCGA-A8-A08G-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Nonsense_Mutation p.R586* Z9ZZZ9ZZZ9 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 0.003 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_utf8.maf b/core/src/test/scripts/test_data/mutations/data_mutations_invalid_utf8.maf deleted file mode 100644 index 638a1768384..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_utf8.maf +++ /dev/null @@ -1,3 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Consequence Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer t_ref_count t_alt_count n_ref_count n_alt_count Amino_Acid_Change -PAX5 St. Jude Children_s Research Hospital GRCh37 9 37015005 37015005 + missense_variant Missense_Mutation SNP A A C SJINF023 Somatic Illumina HiSeq 2500 97 17 29 0 S133R -NRAS St. Jude Children_s Research Hospital GRCh37 1 115258744 115258744 + missense_variant Missense_Mutation SNP C C T SJINF024 Somatic Illumina HiSeq 2500 470 48 20 0 G13D diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_variant_classification.maf b/core/src/test/scripts/test_data/mutations/data_mutations_invalid_variant_classification.maf deleted file mode 100644 index 17917307931..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_invalid_variant_classification.maf +++ /dev/null @@ -1,15 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A NA getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0.00 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1,0 HIGH 1 deletion 1 1,0 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0.00 7 3 30.00 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0.00 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C NA getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0.00 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0.00 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M NA getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0.00 9 9 50.00 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0.00 30 36 54.55 - - - 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene - - - -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; - ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1 deletion 2 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC ENSG00000113318 83 0 0.00 12 2 14.29 - - - 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC - - - -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1 1,1 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 50 0 0.00 36 4 10.00 - - - 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC - - - -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_mUtAtioN SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T NA getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 20 0 0.00 10 4 28.57 - - - 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC - - - -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC ENSG00000125879 57 0 0.00 36 9 20.00 - - - 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC - - - -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC ENSG00000078589 65 0 0.00 46 10 17.86 - - - X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC - - - -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R NA getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC ENSG00000103335 37 0 0.00 20 8 28.57 - - - 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC - - - diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_missing_aa_change_column.maf b/core/src/test/scripts/test_data/mutations/data_mutations_missing_aa_change_column.maf deleted file mode 100644 index b8b3a1478a9..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_missing_aa_change_column.maf +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION HGVSp_Shor SWISSPROT ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU Protein_position amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -A1CF 29974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0RS-01 TCGA-B6-A0RS-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.D424E A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 0.345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 p.D424E 0.768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.A195V A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595937 52595937 + Silent SNP G G A novel unknown TCGA-BH-A18P-01 TCGA-BH-A18P-11 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I167I A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Silent p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 NA NA NA NA NA NA 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed silent c.501 p.I167 0.615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A2M 2 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-BH-A18H-01 TCGA-BH-A18H-10 T T NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 0.143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9242995 9242995 + Silent SNP G G A novel unknown TCGA-C8-A138-01 TCGA-C8-A138-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 NA NA NA NA NA NA 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2553 p.N851 0.003 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9246090 9246090 + Silent SNP C C T novel unknown TCGA-A2-A0EY-01 TCGA-A2-A0EY-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 NA NA NA NA NA NA 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A8-A08G-01 TCGA-A8-A08G-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 0.003 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_missing_swissprot.maf b/core/src/test/scripts/test_data/mutations/data_mutations_missing_swissprot.maf deleted file mode 100644 index f2e737be5a9..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_missing_swissprot.maf +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION HGVSp_Short SchweizerPROT ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU Protein_position amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -A1CF 29974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0RS-01 TCGA-B6-A0RS-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.D424E A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 0.345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 p.D424E 0.768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.A195V A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595937 52595937 + Silent SNP G G A novel unknown TCGA-BH-A18P-01 TCGA-BH-A18P-11 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I167I A1CF NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Silent p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 NA NA NA NA NA NA 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed silent c.501 p.I167 0.615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A2M 2 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-BH-A18H-01 TCGA-BH-A18H-10 T T NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 0.143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9242995 9242995 + Silent SNP G G A novel unknown TCGA-C8-A138-01 TCGA-C8-A138-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 NA NA NA NA NA NA 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2553 p.N851 0.003 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9246090 9246090 + Silent SNP C C T novel unknown TCGA-A2-A0EY-01 TCGA-A2-A0EY-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 NA NA NA NA NA NA 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A8-A08G-01 TCGA-A8-A08G-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 0.003 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_missing_zygosity_status_column.maf b/core/src/test/scripts/test_data/mutations/data_mutations_missing_zygosity_status_column.maf deleted file mode 100644 index 60f945f3577..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_missing_zygosity_status_column.maf +++ /dev/null @@ -1,3 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -BRCA1 genome.wustl.edu GRCh37 17 41243581 41243581 0 Nonsense_Mutation SNP G G A rs80357262 TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A G Unknown Somatic Phase_IV Capture 1 dbGAP IlluminaGAIIx 0 getma.org/?cm=var&var=hg19,17,41243581,G,A&fts=all ENST00000357654.3:c.3967C>T p.Gln1323Ter p.Q1323* ENST00000357654 23-Oct 0 0 BRCA1,stop_gained,p.Gln1027Ter,ENST00000309486,NM_007297.3;BRCA1,stop_gained,p.Gln1323Ter,ENST00000357654,NM_007294.3;BRCA1,stop_gained,p.Gln1323Ter,ENST00000346315,;BRCA1,stop_gained,p.Gln1323Ter,ENST00000354071,;BRCA1,stop_gained,p.Gln1323Ter,ENST00000471181,NM_007300.3;BRCA1,stop_gained,p.Gln1276Ter,ENST00000493795,;BRCA1,stop_gained,p.Gln88Ter,ENST00000461574,;BRCA1,intron_variant,,ENST00000352993,;BRCA1,intron_variant,,ENST00000351666,;BRCA1,intron_variant,,ENST00000468300,NM_007299.3;BRCA1,intron_variant,,ENST00000491747,NM_007298.3;BRCA1,intron_variant,,ENST00000478531,;BRCA1,intron_variant,,ENST00000493919,;BRCA1,intron_variant,,ENST00000484087,;BRCA1,intron_variant,,ENST00000591534,;BRCA1,intron_variant,,ENST00000487825,;BRCA1,intron_variant,,ENST00000586385,;BRCA1,intron_variant,,ENST00000591849,;BRCA1,downstream_gene_variant,,ENST00000470026,;BRCA1,downstream_gene_variant,,ENST00000477152,;BRCA1,downstream_gene_variant,,ENST00000494123,;BRCA1,downstream_gene_variant,,ENST00000473961,;BRCA1,downstream_gene_variant,,ENST00000497488,;BRCA1,downstream_gene_variant,,ENST00000476777,;BRCA1,3_prime_UTR_variant,,ENST00000461221,;BRCA1,non_coding_transcript_exon_variant,,ENST00000467274,;BRCA1,downstream_gene_variant,,ENST00000492859,;BRCA1,downstream_gene_variant,,ENST00000412061,; A ENSG00000012048 ENST00000357654 Transcript stop_gained 4086/7094 3967/5592 1323 Q/* Caa/Taa rs80357262 1 BRCA1 HGNC 1100 protein_coding CCDS11453.1 ENSP00000350283 BRCA1_HUMAN Q9UE29_HUMAN,Q9NQR3_HUMAN,Q92897_HUMAN,Q7KYU6_HUMAN,Q4EW25_HUMAN,Q3YB53_HUMAN,Q3YB50_HUMAN,Q3YB49_HUMAN,Q3LRH8_HUMAN,Q3B891_HUMAN,K7EPC7_HUMAN,K4K7V3_HUMAN,K4JXS7_HUMAN,K4JUB1_HUMAN,G4V503_HUMAN,G4V502_HUMAN,G4V500_HUMAN,G4V4Z8_HUMAN,G4V4Z7_HUMAN,G1UI37_HUMAN,E9PFZ0_HUMAN,E7EWN5_HUMAN,E7EP70_HUMAN,C9IZW4_HUMAN,C4PFY7_HUMAN UPI0000126AC8 NM_007294.3 23-Oct PIRSF_domain:PIRSF001734,hmmpanther:PTHR13763,hmmpanther:PTHR13763:SF0 not_provided,pathogenic HIGH SNV 1 17 41243581 41243581 G A SNP BRCA1 NM_007294.3 human genbank 58_37c -1 reviewed nonsense c.3967 p.Q1323* 0.949 HMMPfam_BRCT|7CHMMSmart_SM00292|7Csuperfamily_BRCT domain|7CHMMSmart_SM00184|7CPatternScan_ZF_RING_1|7CHMMPfam_zf-C3HC4|7Csuperfamily_RING/U-box - 17 41243581 41243581 G A SNP BRCA1 NM_007294.3 human genbank 58_37c -1 reviewed nonsense c.3967 p.Q1323* 0.949 HMMPfam_BRCT|7CHMMSmart_SM00292|7Csuperfamily_BRCT domain|7CHMMSmart_SM00184|7CPatternScan_ZF_RING_1|7CHMMPfam_zf-C3HC4|7Csuperfamily_RING/U-box - diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_more_than_10_types_in_driver_class.maf b/core/src/test/scripts/test_data/mutations/data_mutations_more_than_10_types_in_driver_class.maf deleted file mode 100644 index 756e6619e3c..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_more_than_10_types_in_driver_class.maf +++ /dev/null @@ -1,24 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact SWISSPROT MA:link.MSA MA:link.PDB cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral PGBM_HUMAN mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N Putative_Passenger Passenger mutation test1 test1 -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low CSMD2_HUMAN mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I Putative_Driver Driver mutation test2 test2 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L CLSPN_HUMAN mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L Putative_Passenger Passenger mutation test2 test2 -RSPO1 284654 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 37867916 37867916 Missense_Mutation R2Q low RSPO1_HUMAN mutationassessor.org/?cm=msa&ty=f&p=RSPO1_HUMAN&rb=1&re=150&var=R2Q Putative_Driver Driver mutation test1 test1 -SMAP2 64744 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 40646957 40646957 Missense_Mutation A95T medium SMOC2_HUMAN mutationassessor.org/?cm=msa&ty=f&p=SMAP2_HUMAN&rb=13&re=127&var=A95T mutationassessor.org/pdb.php?prot=SMAP2_HUMAN&from=13&to=127&var=A95T Putative_Passenger Passenger mutation test3 test3 -HPDL 84842 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 45565857 45565857 Silent S150S -- HPDL_HUMAN -- -- Putative_Driver Driver mutation test3 test3 -ZYG11B 79699 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 53009534 53009534 Missense_Mutation E151K low ZY11B_HUMAN mutationassessor.org/?cm=msa&ty=f&p=ZY11B_HUMAN&rb=6&re=304&var=E151K Putative_Driver Driver mutation test2 test2 -CCBL2 56267 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 89226604 89226604 Silent R6R -- KAT3_HUMAN -- -- Putative_Passenger Passenger mutation test3 test3 -OAZ3 51686 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 150005900 150005900 Missense_Mutation P27S OAZ3_HUMAN Putative_Passenger Passenger mutation test4 test4 -HRNR 388697 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 150452666 150452666 Missense_Mutation L2688S low HORN_HUMAN mutationassessor.org/?cm=msa&ty=f&p=HORN_HUMAN&rb=91&re=2799&var=L2688S Putative_Passenger Passenger mutation test5 test5 -TTC24 164118 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 154819467 154819467 Missense_Mutation G27E TTC24_HUMAN mutationassessor.org/?cm=msa&ty=f&p=TTC24_HUMAN&rb=306&re=352&var=G307E Putative_Driver Driver mutation test6 test6 -VANGL2 57216 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 158655985 158655985 Silent T254T -- VANG2_HUMAN -- -- Putative_Driver Driver mutation test3 test3 -ASTN1 460 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 175184979 175184979 Silent D673D -- ASTN1_HUMAN -- -- Putative_Passenger Passenger mutation test2 test2 -FAM5C 339479 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 188334737 188334737 Silent D445D -- BRNP3_HUMAN -- -- Putative_Passenger Passenger mutation test1 Test 1 -G0S2 50486 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 207915844 207915844 Silent A64A -- G0S2_HUMAN -- -- Putative_Driver Driver mutation test2 test2 -RD3 343035 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid LOH Illumina GAIIx chr1 209719152 209719152 Missense_Mutation P146L low RD3_HUMAN mutationassessor.org/?cm=msa&ty=f&p=RD3_HUMAN&rb=4&re=194&var=P146L Putative_Driver Driver mutation test7 test7 -KCNK2 3776 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 213412146 213412146 Missense_Mutation A274S KCNK2_HUMAN mutationassessor.org/?cm=msa&ty=f&p=KCNK2_HUMAN&rb=233&re=313&var=A274S Putative_Driver Driver mutation test8 Test 8 -NLRP3 114548 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 245674681 245674681 Silent G982G -- NLRP3_HUMAN -- -- Putative_Passenger Passenger Mutation test6 test6 -CALML5 51806 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr10 5531064 5531064 Missense_Mutation P113L CALL5_HUMAN mutationassessor.org/?cm=msa&ty=f&p=CALL5_HUMAN&rb=78&re=113&var=P113L mutationassessor.org/pdb.php?prot=CALL5_HUMAN&from=78&to=113&var=P113L Putative_Passenger Passenger mutation test9 test9 -GDF10 2662 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr10 48048882 48048882 Missense_Mutation R337H low GDF10_HUMAN mutationassessor.org/?cm=msa&ty=f&p=BMP3B_HUMAN&rb=240&re=372&var=R337H Putative_Driver Driver mutation test10 test10 -BICC1 80114 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Wildtype Illumina GAIIx chr10 59943055 59943055 Missense_Mutation E49G low BICC1_HUMAN mutationassessor.org/?cm=msa&ty=f&p=BICC1_HUMAN&rb=1&re=200&var=E49G Putative_Driver Driver mutation test11 test11 -STOX1 219736 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Wildtype Illumina GAIIx chr10 70315066 70315066 Missense_Mutation R503Q STOX1_HUMAN mutationassessor.org/?cm=msa&ty=f&p=STOX1_HUMAN&rb=391&re=590&var=R503Q Putative_Passenger Passenger mutation test12 test12 -DLG5 9231 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr10 79246430 79246430 Nonsense_Mutation Q1304* -- DLG5_HUMAN -- -- Putative_Driver Driver mutation test13 test13 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_more_than_80_characters_in_custom_annotation_columns.maf b/core/src/test/scripts/test_data/mutations/data_mutations_more_than_80_characters_in_custom_annotation_columns.maf deleted file mode 100644 index ad89df47f29..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_more_than_80_characters_in_custom_annotation_columns.maf +++ /dev/null @@ -1,4 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.pdb SWISSPROT cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N PGBM_HUMAN Putative_Passenger Passenger mutation test1 012345678901234567890123456789012345678901234567890123456789012345678901234567891 -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I CSMD2_HUMAN Putative_Driver Driver mutation test2 01234567890123456789012345678901234567890123456789012345678901234567890123456789 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L CLSPN_HUMAN Putative_Passenger Passenger mutation test2 test2 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_ms.maf b/core/src/test/scripts/test_data/mutations/data_mutations_ms.maf deleted file mode 100644 index 078b431d037..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_ms.maf +++ /dev/null @@ -1,14 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested test Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1.0 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn 0 no_errors OR11H1 HGNC ENSG00000130538 65 0 0 38 6 13.64 0 0 0 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn 0 no_errors OR11H1 HGNC 0 0 0 Putative_Driver Untested driver -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Verified Untested None Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; -0 ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1 HIGH 1.0 deletion 1.0 1 2 46707888 46707888 G -0 DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 0 no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0 7 3 30.0 0 0 0 2 46707888 46707888 G -0 DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 0 no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC 0 0 0 Putative_Passenger Test passenger Class 2 Class annotation -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Germline Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1.0 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM 0 no_errors ABLIM1 HGNC ENSG00000099204 77 0 0 36 13 26.53 0 0 0 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM 0 no_errors ABLIM1 HGNC 0 0 0 Putative_Driver Test driver Class 1 Class annotation -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1.0 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B 0 no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0 19 17 45.95 0 0 0 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B 0 no_errors ADAMTS20 HGNC 0 0 0 Unknown Class 4 Class annotation -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested LOH Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like 0 no_errors CADM2 HGNC ENSG00000175161 57 0 0 22 23 51.11 0 0 0 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like 0 no_errors CADM2 HGNC 0 0 0 Putative_Driver Test driver Class 4 Class annotation -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Post-transcriptional modification Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2125.0 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1.0 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ 0 no_errors DTNB HGNC ENSG00000138101 35 0 0 9 9 50.0 0 0 0 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ 0 no_errors DTNB HGNC 0 0 0 Putative_Passenger Test passenger Class 1 Class annotation -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Unknown Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1.0 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0 30 36 54.55 0 0 0 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors CTD-2132N18.3 Clone_based_vega_gene 0 0 0 Putative_Driver Test driver Class 1 Class annotation -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Wildtype Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; -0 ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1.0 deletion 2.0 5 80024722 80024722 T -0 DEL MSH3 ENST00000265081 human ensembl 69_37n 1 known frame_shift_del c.1506 p.L503fs 998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C 0 no_errors MSH3 HGNC ENSG00000113318 83 0 0 12 2 14.29 0 0 0 5 80024722 80024722 T -0 DEL MSH3 ENST00000265081 human ensembl 69_37n 1 known frame_shift_del c.1506 p.L503fs 998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C 0 no_errors MSH3 HGNC 0 0 0 Putative_Passenger Test passenger Class 3 Class annotation -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 -0 -0 Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1.0 1,1 6 135507043 135507044 -0 A INS MYB ENST00000341911 human ensembl 69_37n 1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom 0 no_errors MYB HGNC ENSG00000118513 50 0 0 36 4 10.0 0 0 0 6 135507043 135507044 -0 A INS MYB ENST00000341911 human ensembl 69_37n 1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom 0 no_errors MYB HGNC 0 0 0 Putative_Passenger Test passenger -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1.0 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n 1 known missense c.1256 p.I419T 999 pfam_NPIP 0 no_errors NPIPL2 HGNC ENSG00000196436 20 0 0 10 4 28.57 0 0 0 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n 1 known missense c.1256 p.I419T 999 pfam_NPIP 0 no_errors NPIPL2 HGNC 0 0 0 Putative_Passenger Test passenger Class 1 Class annotation -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1.0 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n 1 known missense c.289 p.V97M 963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain 0 no_errors OTOR HGNC ENSG00000125879 57 0 0 36 9 20.0 0 0 0 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n 1 known missense c.289 p.V97M 963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain 0 no_errors OTOR HGNC 0 0 0 Class 2 Class annotation -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1.0 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n 1 known silent c.672 p.S224 92 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor 0 no_errors P2RY10 HGNC ENSG00000078589 65 0 0 46 10 17.86 0 0 0 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n 1 known silent c.672 p.S224 92 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor 0 no_errors P2RY10 HGNC 0 0 0 Putative_Driver Test driver Class 3 Class annotation -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1.0 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1000 pfam_DUF3595 0 no_errors PIEZO1 HGNC ENSG00000103335 37 0 0 20 8 28.57 0 0 0 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1000 pfam_DUF3595 0 no_errors PIEZO1 HGNC 0 0 0 Putative_Passenger Test passenger Class 3 Class annotation diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_name_swissprot.maf b/core/src/test/scripts/test_data/mutations/data_mutations_name_swissprot.maf deleted file mode 100644 index f9dad84fe97..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_name_swissprot.maf +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION HGVSp_Short SWISSPROT ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU Protein_position amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -A1CF 29974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0RS-01 TCGA-B6-A0RS-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.D424E A1CF_HUMAN NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 0.345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 p.D424E 0.768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.A195V Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595937 52595937 + Silent SNP G G A novel unknown TCGA-BH-A18P-01 TCGA-BH-A18P-11 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I167I A1CF_HUMAN NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Silent p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 NA NA NA NA NA NA 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed silent c.501 p.I167 0.615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A2M 2 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-BH-A18H-01 TCGA-BH-A18H-10 T T NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.Y1055C A1CF_HUMAN,HBB_YEAST NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 0.143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9242995 9242995 + Silent SNP G G A novel unknown TCGA-C8-A138-01 TCGA-C8-A138-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.N851N A2MG_HUMAN NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 NA NA NA NA NA NA 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2553 p.N851 0.003 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9246090 9246090 + Silent SNP C C T novel unknown TCGA-A2-A0EY-01 TCGA-A2-A0EY-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.E737E A2MG_HUMAN NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 NA NA NA NA NA NA 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A8-A08G-01 TCGA-A8-A08G-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Nonsense_Mutation p.R586* HBB_YEAST NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 0.003 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_not_loaded_ms.maf b/core/src/test/scripts/test_data/mutations/data_mutations_not_loaded_ms.maf deleted file mode 100644 index 70c7a19c070..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_not_loaded_ms.maf +++ /dev/null @@ -1,15 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested None Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A NA getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0.00 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1,0 HIGH 1 deletion 1 1,0 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0.00 7 3 30.00 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested loh Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0.00 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Post-transcriptional modification Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C NA getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0.00 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Frame_Shift_Del SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Germline Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0.00 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Unknown Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M NA getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0.00 9 9 50.00 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Wildtype Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0.00 30 36 54.55 - - - 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene - - - -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; - ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1 deletion 2 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC ENSG00000113318 83 0 0.00 12 2 14.29 - - - 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC - - - -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1 1,1 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 50 0 0.00 36 4 10.00 - - - 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC - - - -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T NA getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 20 0 0.00 10 4 28.57 - - - 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC - - - -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC ENSG00000125879 57 0 0.00 36 9 20.00 - - - 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC - - - -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC ENSG00000078589 65 0 0.00 46 10 17.86 - - - X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC - - - -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R NA getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC ENSG00000103335 37 0 0.00 20 8 28.57 - - - 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC - - - diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_not_supported_custom_driver_annotation_values.maf b/core/src/test/scripts/test_data/mutations/data_mutations_not_supported_custom_driver_annotation_values.maf deleted file mode 100644 index 0a23c639ab9..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_not_supported_custom_driver_annotation_values.maf +++ /dev/null @@ -1,4 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center Tumor_Sample_Barcode Verification_Status Validation_Status Mutation_Status Sequencer Chromosome Start_position End_position Variant_Classification HGVSp_Short MA:FImpact MA:link.MSA MA:link.pdb SWISSPROT cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -HSPG2 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 22078087 22078087 Missense_Mutation D820N neutral mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N PGBM_HUMAN OTHER_value Passenger mutation test1 test1 -CSMD2 114784 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 34085156 34085156 Missense_Mutation V277I low mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I CSMD2_HUMAN Putative_Driver Driver mutation test2 test2 -CLSPN 63967 broad.mit.edu TCGA-A1-A0SB-01 Unknown valid Unknown Illumina GAIIx chr1 35989584 35989584 Missense_Mutation F628L mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L CLSPN_HUMAN Putative_Passenger Passenger mutation test2 test2 diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_silent_alternative.maf b/core/src/test/scripts/test_data/mutations/data_mutations_silent_alternative.maf deleted file mode 100644 index c161231ef8c..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_silent_alternative.maf +++ /dev/null @@ -1,15 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A NA getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0.00 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1,0 HIGH 1 deletion 1 1,0 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0.00 7 3 30.00 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0.00 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C NA getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0.00 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 5'Flank SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0.00 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - -Unknown genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M NA getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0.00 9 9 50.00 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - -Unknown 0 genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0.00 30 36 54.55 - - - 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene - - - -Unknown 0 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; - ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1 deletion 2 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC ENSG00000113318 83 0 0.00 12 2 14.29 - - - 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC - - - -Unknown 0 genome.wustl.edu GRCh37 6 135507043 135507044 1 IGR INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1 1,1 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 50 0 0.00 36 4 10.00 - - - 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC - - - -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T NA getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 20 0 0.00 10 4 28.57 - - - 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC - - - -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC ENSG00000125879 57 0 0.00 36 9 20.00 - - - 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC - - - -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC ENSG00000078589 65 0 0.00 46 10 17.86 - - - X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC - - - -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R NA getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC ENSG00000103335 37 0 0.00 20 8 28.57 - - - 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC - - - diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_some_silent.maf b/core/src/test/scripts/test_data/mutations/data_mutations_some_silent.maf deleted file mode 100644 index 2775c855b08..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_some_silent.maf +++ /dev/null @@ -1,15 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A NA getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0.00 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1,0 HIGH 1 deletion 1 1,0 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0.00 7 3 30.00 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0.00 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C NA getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0.00 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 5'Flank SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0.00 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M NA getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0.00 9 9 50.00 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0.00 30 36 54.55 - - - 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene - - - -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; - ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1 deletion 2 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC ENSG00000113318 83 0 0.00 12 2 14.29 - - - 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC - - - -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1 1,1 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 50 0 0.00 36 4 10.00 - - - 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC - - - -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T NA getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 20 0 0.00 10 4 28.57 - - - 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC - - - -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC ENSG00000125879 57 0 0.00 36 9 20.00 - - - 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC - - - -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC ENSG00000078589 65 0 0.00 46 10 17.86 - - - X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC - - - -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R NA getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC ENSG00000103335 37 0 0.00 20 8 28.57 - - - 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC - - - diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_test_variant_types.maf b/core/src/test/scripts/test_data/mutations/data_mutations_test_variant_types.maf deleted file mode 100644 index e6aee71b67d..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_test_variant_types.maf +++ /dev/null @@ -1,11 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short -INHA 3623 . GRCh37 2 220439701 220439700 + Unknown INS - - CT novel TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - p.L189Cfs*2 -INHA 3623 . GRCh37 2 220439700 220439701 + Unknown INS AAA - CT novel TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 CTA - p.L189Cfs*2 -MTOR 2475 . GRCh37 1 11290179 11290180 + Unknown DEL A A - rs35067541 TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A c.2779+803del p.Tr27* -MTOR 2475 . GRCh37 1 11290179 11290179 + Unknown DEL A AA - rs35067541 TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A AA c.2779+803del p.Tr27* -CHD1L 9557 . GRCh37 1 146728217 146728217 + Splice_Site SNP GG G A rs942221386 TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 GG G c.494+1G>A p.X165_splice -CHD1L 9557 . GRCh37 1 146728217 146728217 + Splice_Site SNP - G A rs942221386 TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - G c.494+1G>A p.X165_splice -CHD1L 9557 . GRCh37 1 146728217 146728217 + Splice_Site DNP TGA TG CA novel TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 TGA TG -CHD1L 9557 . GRCh37 1 146728217 146728217 + Splice_Site TNP TGA TGAA CAA novel TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 TGA TGAA -CHD1L 9557 . GRCh37 1 146728217 146728217 + Splice_Site ONP TGA TGA CAA novel TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 TGA TGA -CHD1L 9557 . GRCh37 1 146728217 146728217 + Splice_Site ONP test AAAA AAAA novel TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 AAAA diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_too_long_hgvsp_short.maf b/core/src/test/scripts/test_data/mutations/data_mutations_too_long_hgvsp_short.maf deleted file mode 100644 index 58bfa356063..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_too_long_hgvsp_short.maf +++ /dev/null @@ -1,3 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id HGVSP_Short Variant_Classification Variant_Type Tumor_Sample_Barcode Chromosome Start_Position End_Position Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 -A1CF 29974 p.D424E Missense_Mutation SNP TCGA-A1-A0SB-01 10 52573692 52573692 G G T -FLG 2312 p.Q3631_Q3632insHQSADSSRHSGIGHGQASSAVRDSGHRGYSGSQASDSEGHSEDSDTQSVSAQGKAGPHQQSHKESARGQSGESSGRSGSFLYQVSTHEQSESTHGQSAPSTGGRQGSHYDQAQDSSRHSASQEGQDTIRGHPGPSRGGRQGSHQEQSVDRSGHSGSHHSHTTSQGRSDASRGQSGSRSASRKTYDKEQSGDGSRHSGSHHHEASSWADSSRHSLVGQGQSSGPRTSRPRGSSVSQDSDSEGHSEDSERRSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVRDSGHRGSSGSQASDSEGHSEDSDTQSVSAHGQAGPHQQSHQESTRGRSAGRSGRSGSFLYQVSTHEQSESAHGRTGTSTGGRQGSHHKQARDSSRHSTSQEGQDTIHGHPGSSSGGRQGSHYEQLVDRSGHSGSHHSHTTSQGRSDASHGHSGSRSASRQTRNDEQSGDGSRHSGSRHHEASSRADSSGHSQVGQGQSEGPRTSRNWGSSFSQDSDSQGHSEDSERWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVRDSGHRGYSGSQASDNEGHSEDSDTQSVSAHGQAGSHQQSHQESARGRSGETSGHSGSFLYQVSTHEQSESSHGWTGPSTRGRQGSRHEQAQDSSRHSASQDGQDTIRGHPGSSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRSDASRGQSGSRSASRTTRNEEQSGDGSRHSGSRHHEASTHADISRHSQAVQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASSAVRDSGHRGYSGSQASDNEGHSEDSDTQSVSAHGQAGSHQQSHQESARGRSGETSGHSGSFLYQVSTHEQSESSHGWTGPSTRGRQGSRHEQAQDSSRHSASQYGQDTIRGHPGSSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRSDASRGQSGSRSASRTTRNEEQSGDSSRHSVSRHHEASTHADISRHSQAVQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHRGSVQEQSRHGSRHPRSHHEDRAGHGHSADRSRQSGTRHAETSSGGQAASSHEQARSSPGERHGSRHQQSADSSRHSGIPRGQASSAVRDSRHWGSSGSQASDSEGHSEESDTQSVSGHGQAGPHQQSHQESARDRSGGRSGRSGSFLYQVSTHEQSESAHGRTRTSTGRRQGSHHEQARDSSRHSASQEGQDTIRGHPGSSRRGRQGSHYEQSVDRSGHSGSHHSHTTSQGRSDASRGQSGSRSASRQTRNDEQSGDGSRHSWSHHHEASTQADSSRHSQSGQGQSAGPRTSRNQGSSVSQDSDSQGHSEDSERWSGSASRNHRGSAQEQSRDGSRHPTSHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQ In_Frame_Ins DUP:TANDEM TCGA-A1-A0SB-01 1 152276466 152281329 C C CTGCTGGTGGTGGGATCCATGTCTCTCTCCTGCACTTGATCTTGCCTGTTCATGGGATGATGCAGCCTGTCCACCAGAGGAATTCTCTGCATGATGAGTGCCTGATTGTCTGGAGCTCTCTGCAGAGTGCCCGTGACCGGCTCTGTCTTCGTGATGGGACGTGGGGTGTCTGGAGCCATCTCTTGACTGCTCCTGAGCAGATCCACGATGGTTTCTGGAAGCAGACCCAGACCACCTCTCAGAGTCTTCTGAGTGTCCCTGACTGTCACTGTCCTGGCTAACACTGGATCCCTGGTTCCTGCTTGTCCTGGGCCCCGCTGATTGTCCCTGGCCGGACTGTGAGTGTCTAGAGCTGTCCGCCTGAGTGGAAGCTTCATGGTGATGCGACCATGAGTGCCTGGAGCCATCTCCTGATTGTTCGTCATTACGAGTTTGTCTGCTGGCACTTCTGGATCCTGACTGCCCACGGGAGGCATCAGACCTTCCCTGGGATGTGGTGTGGCTGTGATGGGACCCTGAGTGTCCAGACCTATCTACCGATTGCTCGTAGTGGGATCCCTGCCTTCCTCTTCTGCTTGACCCCGGGTGTCCACGAATGGTGTCCTGACCCTCTTGGGACGCTGAGTGCCTGGAGCTGTCTCGTGCCTGCTCGTGGTGGGATCCTTGTCTTCGTCCAGTGCTGGTCCTGGTCCGCCCATGGGCAGACTCAGACTGTTCATGAGTGCTCACCTGGTAGAGGAAAGACCCTGAACGTCCAGACCTTCCCCCTGACCGGTCACGTGCGGACTCTTGGTGGCTCTGCTGATGGGGCCCAGCCTGTCCATGGCCTGACACTGACTGTGTGTCTGACTCTTCTGAATGTCCCTCACTATCACTGGCCTGACTACCACTGGACCCCCAGTGTCTACTGTCTCTGACTGCAGATGAAGCTTGTCCACGCGGAATGCCTGAGTGTCTGGAGCTGTCTGCTGACTGCTGGTGGCGGGATCCGTGTCTCTCTCCTGGACTTGATCTTGCCTGTTCATGGGATGATGCAGCCTGTCCACCAGAGGAAGTCTCTGCGTGACGAGTGCCTGATTGTCTGGAGCGGTCTGCAGAGTGCCCGTGACCGGCTCTGTCTTCGTGATGGGACCTGGGGTGTCTGGAGCCGTGCCTTGACTGCTCCTGAACAGATCCACGATGGTTTCTGGAAGCAGACCCAGACCACCTCTCAGAGTCTTCTGAATGTCCCTCACTGTCACTGTCCTGGCTCACACTGGATCCCTGGCGCCTGCTTCTCCTGGACCCCTCTGATTGTCCCTGGACTGCCTGTGAGTGTCTAGAGATGTCGGCATGAGTGGAAGCTTCATGGTGACGTGACACTGAGTGCCTGGAGCTGTCTCCTGATTGTTCCTCATTACGTGTTGTTCTGCTTGCACTTCTGGATCCTGACTGCCCACGGGAGGCATCAGACCTTCCCTGGGATGTGGTGTGGCTGTGATGGGACCCTGAGTGTCCAGAGCTATCTACCGAATGCTCGTGGTGGTACCCCTGCCTTCCTCCTCTGCTTGACCCCGGGTGTCCACGAATGGTGTCCTGACCGTATTGGGATGCTGAGTGCCTGGAGCTGTCTTGTGCCTGCTCATGGCGGGATCCTTGTCTTCCTCTAGTGCTGGGCCCCGTCCATCCATGGGAGGACTCAGACTGTTCATGAGTGCTCACCTGGTAGAGGAAAGATCCTGAATGTCCAGACGTTTCCCCTGACCGGCCACGTGCGGACTCTTGGTGGCTCTGCTGATGGGACCCAGCCTGTCCGTGGGCTGACACTGACTGTGTGTCTGAGTCTTCTGAATGTCCCTCATTGTCACTGGCCTGACTACCACTGTACCCTCGGTGTCCACTGTCTCTGACTGCAGATGAAGCTTGTCCGTGCCCAATGCCTGAGTGTCTGGAGCTGTCTGCTGACTGCTGGTGGTGGGATCCATGTCTTTCTCCTGCACTTGATCTTGCCTGTTCATGGGATGATGCAGCCTGTCCACCAGAGGAAGTCTGTGTGTGACGAGTGCCTGATTGTCTGGAGCTGTCTGCAGAGTGCCCATGACCAGCTCTGTCTTCTTGATGGGACCTGGGGTGTCTGGAGCCATCTCTTAGCTGCTCCTGAGCAGATCCATGATGGTTTCTGGAAGCAGACCCAGACCACCTCTCAGAGTCTTCTGAATGTCCCTCACTGTCACTGTCCTGGCTCACACTGGATCCCTGGCGCCTGCTTCTCCTGGACCCCTCTGATTGTCCCTGGACTGCCTGTGAGTGTCTAGAGATGTCGGCATGAGTGGAAGCTTCATGGTGACGCGACCCTGAGTGCCTGGAGCCGTCTCCTGATTGTTCCTCATTACGTGTTGTTCTGCTTGCACTTCTGGATCCTGACTGCCCACGGGAGGCATCAGACCTTCCCTGGGATGTGGTGTGGCTGTGATGGGACCCTGAGTGTCCAGAGCTATCTACCGAATGCTCGTGGTGGTACCCCTGCCTTCCTCCTCTGCTTGACCCCGGGTGTCCACGAATGGTGTCCTGACCGTCTTGGGATGCTGAGTGCCTGGAGCTGTCTTGTGCCTGCTCATGGCGGGATCCTTGTCTTCCTCTAGTGCTGGGCCCCGTCCATCCATGGGAGGACTCAGACTGTTCATGAGTGCTCACCTGGTAGAGGAAAGATCCTGAATGTCCAGACGTTTCCCCTGACCGGCCACGTGCGGACTCTTGGTGGCTCTGCTGATGGGACCCAGCCTGTCCGTGGGCTGACACTGACTGTGTGTCTGAGTCTTCTGAATGTCCCTCATTGTCACTGGCCTGACTACCACTGTACCCTCGGTGTCCACTGTCTCTGACTGCAGATGAAGCTTGTCCGTGCCCAATGCCTGAGTGTCTGGAGCTGTCTGCTGACTGCTGGTGGTGGGATCCATGTCTTTCTCCTGCACTTGATCTTGCCTGTTCATGGGATGATGCAGCCTGTCCACCAGAGGAAGTCTGTGTGTGACGAGTGCCTGATTGTCTGGAGCTGTCTGCAGAGTGCCCATGACCAGCTCTGTCTTCTTGATGGGACCTGGGGTGTCTGGAGCCATCTCTTAGCTGCTCCTGAGCAGATCCATGATGGTTTCTGGAAGCAGACCCAGACCACCTCTCAGAGTCTTCTGAGTGTCCCTGACTGTCACTGTCCTGGCTAAAACTGGATCCCCAGTTCCTGCTTGTCCTGGGCCCCTCTGATTGTCCCTGGCCCACCTGCGAGTGTCCAGAGCTGTCGGCCCGAGAGGAAGCTTCATGGTGACGCGACCCTGAGTGCCTGGAGCCGTCTCCTGATTGTTCATCGTTACGAGTTTGTCTGCTTGCACTTCTGGATCCTGAGTGCCCATGGGAGGCATCAGACCTTCCCTGGGATGTGGTGTGGCTGTGATGAGACCCTGAGTGTCCAGATCTATCTACCAATTGCTCGTAGTGGGATCCCTGCCTTCCTCCACTGCTTGACCCCGGGTGTCCATGAATGGTGTCCTGACCCTCTTGGGACGTTGAGTGCCTGGAGCTGTCTCGTGCCTGCTTGTGGTGGGATCCTTGTCTTCCTCCAGTGCTGGTCCCGGTCCGTCCATGGGCGGACTCAGACTGTTCATGAGTGCTCACCTGGTAGAGGAAAGACCCTGAACGTCCAGACCTTCCTGCTGACCGGCCACGTGTGGACTCTTGGTGGCTCTGCTGATGGGGCCCAGCCTGTCCGTGGGCTGACACTGACTGTGTGTCTGAGTCTTCTGAATGTCCCTCACTGTCACTGGCCTGACTACCACTGGACCCTCGGTGTCCACTGTCTCTGACTGCAGATGAAGCTTGTCCGTGCCCAATGCCTGAGTGTCTGGAGCTGTCTGCTGACTGCTGGTGGTGGGATCCGTGTCTCTCTCCTGCACTTGATCTTGCCTGTTCATGGGATGATGCAGCCTGTCCACCAGAGGAATTCTCTGCATGATGAGTGCCTGATTGTCTGGAGCTCTCTGCAGAGTGCCCATGACCGGCTCTGTCTTCGTGATGGGACCTGGGGTGTCTGGAGCCATCTCTTGACTGCTCCTGAGCAGATCCATGATGGTTTCTGGACGCAGACCCAGACCGCCTCTCAGAATCTTCTGAGTGTCCCTCACTGTCACTGTCCTGGCTAACACTGGATCCCCGGGGCCTGCTTGTCCTGGGCCCTGATGATTGTCCCTGGCCCACCAGTGAGTGTCTAGAGCTGTCGGCCCAAGAGGAAGCTTCATGATGATGCGACCCTGAGTGCCTAGAGCCATCTCCTGATTGTTCCTTGTCATATGTTTTTCTGCTTGCACTTCTGGATCCTGACTGCCCACGGGAGGCATCAGACCTTCCCTGGGATGTGGTGTGGCTGTGATGAGACCCTGAGTGTCCAGACCTATCTACCGATTGCTCTTGGTGGGACCCCTGTCTTCCTCCTCTGCTTGGCCCCGGGTGTCCACGAATGGTGTCCTGACCCTCTTGGGATGCTGAGTGCCTGGAGCTGTCTTGTGCCTGATCATAATGGGATCCTTGTCTTCCTCCAGTGCTGGGCGCAGACTGTCCATGGGTGGACTCAGACTGTTCATGAGTGCTCACCTGGTAGAGGAAAGACCCTGAACGTCCAGAGCTTTCCCCTGACTGGCCACGTGCGGACTCTTTGTGGCTCTGCTGATGGGGCCCAGCTTTTCCCTGTGCTGACACTGACTGTGTGTCTGAGTCTTCTGAATGTCCCTCACTGTCACTGGCCTGACTACCACTGTACCCTCGGTGTCCACTGTCTCTGACTGCAGATGAAGCTTGTCCATGCCCAATGCCTGAGTGTCTGGAGCTGTCTGCTGACTGG diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_validation_status.maf b/core/src/test/scripts/test_data/mutations/data_mutations_validation_status.maf deleted file mode 100644 index a89e953da67..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_validation_status.maf +++ /dev/null @@ -1,7 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation Validation_method -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A NA NA NA NA Unknown valid unknown Phase_IV WXS Sanger_PCR_WGA 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1.0 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0.0 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - Putative_Driver Test driver Sanger_PCR_WGA -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Missense_Mutation DEL - G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G A C - X Unknown valid unknown Phase_IV WXS Sanger_PCR_WGA 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1 HIGH 1.0 deletion 1.0 1 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0.0 7 3 30.0 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - Putative_Passenger Test passenger Class 2 Class annotation Sanger_PCR_WGA -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T A C - - Unknown Invalid unknown Phase_IV WXS Sanger_PCR_WGA 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1.0 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0.0 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - Putative_Driver Test driver Class 1 Class annotation Sanger_PCR_WGA -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP A T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T A A A A Unknown Invalid unknown Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1.0 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0.0 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - Unknown Class 4 Class annotation Sanger_PCR_WGA -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C A C - C Unknown Valid Germline Phase_IV WXS Sanger_PCR_WGA 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0.0 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - Putative_Driver Test driver Class 4 Class annotation Sanger_PCR_WGA -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C A A A C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA 1 dbGAP Illumina GAIIx medium 2125.0 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1.0 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0.0 9 9 50.0 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - Putative_Passenger Test passenger Class 1 Class annotation Sanger_PCR_WGA diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_vs.maf b/core/src/test/scripts/test_data/mutations/data_mutations_vs.maf deleted file mode 100644 index 95378db1490..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_vs.maf +++ /dev/null @@ -1,14 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown --- Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1.0 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn 0 no_errors OR11H1 HGNC ENSG00000130538 65 0 0 38 6 13.64 0 0 0 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn 0 no_errors OR11H1 HGNC 0 0 0 Putative_Driver Test driver -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Test Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; -0 ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1 HIGH 1.0 deletion 1.0 1 2 46707888 46707888 G -0 DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 0 no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0 7 3 30.0 0 0 0 2 46707888 46707888 G -0 DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 0 no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC 0 0 0 Putative_Passenger Test passenger Class 2 Class annotation -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1.0 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM 0 no_errors ABLIM1 HGNC ENSG00000099204 77 0 0 36 13 26.53 0 0 0 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM 0 no_errors ABLIM1 HGNC 0 0 0 Putative_Driver Test driver Class 1 Class annotation -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1.0 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B 0 no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0 19 17 45.95 0 0 0 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B 0 no_errors ADAMTS20 HGNC 0 0 0 Unknown Class 4 Class annotation -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like 0 no_errors CADM2 HGNC ENSG00000175161 57 0 0 22 23 51.11 0 0 0 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like 0 no_errors CADM2 HGNC 0 0 0 Putative_Driver Test driver Class 4 Class annotation -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2125.0 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1.0 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ 0 no_errors DTNB HGNC ENSG00000138101 35 0 0 9 9 50.0 0 0 0 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ 0 no_errors DTNB HGNC 0 0 0 Putative_Passenger Test passenger Class 1 Class annotation -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1.0 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0 30 36 54.55 0 0 0 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors CTD-2132N18.3 Clone_based_vega_gene 0 0 0 Putative_Driver Test driver Class 1 Class annotation -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; -0 ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1.0 deletion 2.0 5 80024722 80024722 T -0 DEL MSH3 ENST00000265081 human ensembl 69_37n 1 known frame_shift_del c.1506 p.L503fs 998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C 0 no_errors MSH3 HGNC ENSG00000113318 83 0 0 12 2 14.29 0 0 0 5 80024722 80024722 T -0 DEL MSH3 ENST00000265081 human ensembl 69_37n 1 known frame_shift_del c.1506 p.L503fs 998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C 0 no_errors MSH3 HGNC 0 0 0 Putative_Passenger Test passenger Class 3 Class annotation -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 -0 -0 Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1.0 1,1 6 135507043 135507044 -0 A INS MYB ENST00000341911 human ensembl 69_37n 1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom 0 no_errors MYB HGNC ENSG00000118513 50 0 0 36 4 10.0 0 0 0 6 135507043 135507044 -0 A INS MYB ENST00000341911 human ensembl 69_37n 1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom 0 no_errors MYB HGNC 0 0 0 Putative_Passenger Test passenger -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1.0 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n 1 known missense c.1256 p.I419T 999 pfam_NPIP 0 no_errors NPIPL2 HGNC ENSG00000196436 20 0 0 10 4 28.57 0 0 0 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n 1 known missense c.1256 p.I419T 999 pfam_NPIP 0 no_errors NPIPL2 HGNC 0 0 0 Putative_Passenger Test passenger Class 1 Class annotation -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1.0 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n 1 known missense c.289 p.V97M 963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain 0 no_errors OTOR HGNC ENSG00000125879 57 0 0 36 9 20.0 0 0 0 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n 1 known missense c.289 p.V97M 963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain 0 no_errors OTOR HGNC 0 0 0 Class 2 Class annotation -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1.0 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n 1 known silent c.672 p.S224 92 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor 0 no_errors P2RY10 HGNC ENSG00000078589 65 0 0 46 10 17.86 0 0 0 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n 1 known silent c.672 p.S224 92 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor 0 no_errors P2RY10 HGNC 0 0 0 Putative_Driver Test driver Class 3 Class annotation -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1.0 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1000 pfam_DUF3595 0 no_errors PIEZO1 HGNC ENSG00000103335 37 0 0 20 8 28.57 0 0 0 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1000 pfam_DUF3595 0 no_errors PIEZO1 HGNC 0 0 0 Putative_Passenger Test passenger Class 3 Class annotation diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_wrong_aa_change.maf b/core/src/test/scripts/test_data/mutations/data_mutations_wrong_aa_change.maf deleted file mode 100644 index 7cc59bc91dc..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_wrong_aa_change.maf +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION Amino_Acid_Change SWISSPROT ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU Protein_position amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -A1CF 29974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0RS-01 TCGA-B6-A0RS-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 0.345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 0.768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.A195V;p.I167I Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595937 52595937 + Silent SNP G G A novel unknown TCGA-BH-A18P-01 TCGA-BH-A18P-11 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I167= Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Silent p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 NA NA NA NA NA NA 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed silent c.501 p.I167 0.615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A2M 2 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-BH-A18H-01 TCGA-BH-A18H-10 T T NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.N851,Y1055delinsCC P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 0.143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9242995 9242995 + Missense_Mutation SNP G G A novel unknown TCGA-C8-A138-01 TCGA-C8-A138-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.[N851N];[Y1055C] P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Missense_Mutation p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 NA NA NA NA NA NA 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.2553 p.N851 0.003 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9246090 9246090 + Silent SNP C C T novel unknown TCGA-A2-A0EY-01 TCGA-A2-A0EY-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.E737E P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 NA NA NA NA NA NA 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A8-A08G-01 TCGA-A8-A08G-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Nonsense_Mutation NULL P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 0.003 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors diff --git a/core/src/test/scripts/test_data/mutations/data_mutations_wrong_gene_position.maf b/core/src/test/scripts/test_data/mutations/data_mutations_wrong_gene_position.maf deleted file mode 100644 index 2bc7e152097..00000000000 --- a/core/src/test/scripts/test_data/mutations/data_mutations_wrong_gene_position.maf +++ /dev/null @@ -1,9 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO MINIMISED ExAC_AF ExAC_AF_AFR ExAC_AF_AMR ExAC_AF_EAS ExAC_AF_FIN ExAC_AF_NFE ExAC_AF_OTH ExAC_AF_SAS GENE_PHENO FILTER chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All -OR11H1 81061 genome.wustl.edu GRCh37 22 16449539.0 16449539 -1 Missense_Mutation SNP NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A NA getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 NA NA OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; NA ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 NA [Not Available] OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN [Not Available] UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 [Not Available] Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] 0,1 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] MODERATE NA SNV [Not Available] [Not Available] 0,1 NA [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] NA 22 16449539 16449539 NA NA SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn NA no_errors OR11H1 HGNC ENSG00000130538 65 NA 0.00 38 NA 13.64 NA NA NA 22 16449539 16449539 NA NA SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn NA no_errors OR11H1 HGNC NA NA - -TMEM247 388946 genome.wustl.edu GRCh37 NA 46707888 46707888.0 NA Frame_Shift_Del DEL NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 NA NA TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; NA ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga rs765666900,COSM1408208 NA [Not Available] TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN [Not Available] UPI0000366EF8 NM_001145051.2 [Not Available] [Not Available] 2/3 [Not Available] Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] -:0.0202 -:0.0439 [Not Available] 0,1 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] HIGH NA deletion [Not Available] NA 0,1 NA [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] NA NA 46707888 46707888 NA NA DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL NA no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 NA 0.00 NA NA 30.00 NA NA NA NA 46707888 46707888 NA NA DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL NA no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC NA NA - -ABLIM1 3983 genome.wustl.edu GRCh37 10 116247760 -1 Missense_Mutation SNP NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 NA NA ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; NA ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 NA [Not Available] ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN [Not Available] UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 [Not Available] PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] 1,1,1 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] MODERATE NA SNV [Not Available] [Not Available] 1,1,1 NA [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] NA 10 116247760 116247760 NA NA SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM NA no_errors ABLIM1 HGNC ENSG00000099204 77 NA 0.00 36 13 26.53 NA NA NA 10 116247760 116247760 NA NA SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM NA no_errors ABLIM1 HGNC NA NA - -ADAMTS20 80070 genome.wustl.edu GRCh37 12 43944926 -1 Missense_Mutation SNP NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C NA getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.239A>G p.Tyr80Cys p.Y80C ENST00000389420 2/39 NA NA ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; NA ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 NA [Not Available] ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN [Not Available] UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 [Not Available] hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] 1,1 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] MODERATE NA SNV [Not Available] [Not Available] 1,1 NA [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] NA 12 43944926 43944926 NA NA SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B NA no_errors ADAMTS20 HGNC ENSG00000173157 50 NA 0.00 19 17 45.95 NA NA NA 12 43944926 43944926 NA NA SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B NA no_errors ADAMTS20 HGNC NA NA - -CADM2 253559 genome.wustl.edu GRCh37 NA 85932472 85932472 NA Silent SNP NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.243C>T p.= p.R81R ENST00000407528 3/10 NA NA CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,p.=,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; NA ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 NA cgC/cgT rs747906551,COSM1178952,COSM1178953 NA [Not Available] CADM2 HGNC 29849 protein_coding [Not Available] CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 [Not Available] [Not Available] 3/10 [Not Available] Gene3D:2.60.40.10,Pfam_domain:PF07686,PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] 0,1,1 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] LOW [Not Available] SNV [Not Available] [Not Available] 0,1,1 NA 8.24e-06 [Not Available] [Not Available] [Not Available] [Not Available] 1.54e-05 [Not Available] [Not Available] [Not Available] NA NA 85932472 85932472 NA NA SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like NA no_errors CADM2 HGNC ENSG00000175161 57 NA 0.00 22 23 51.11 NA NA NA NA 85932472 85932472 NA NA SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like NA no_errors CADM2 HGNC NA NA - -DTNB 1838 genome.wustl.edu GRCh37 NA 25678299 25678299 -1 Missense_Mutation SNP NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx medium 2.125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M NA getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144G>A p.Val382Met p.V382M ENST00000406818 11/21 NA NA DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; NA ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 NA [Not Available] DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 [Not Available] PIRSF_domain:PIRSF038204,hmmpanther:PTHR11915,hmmpanther:PTHR11915:SF227 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] 1,1 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] MODERATE NA SNV [Not Available] [Not Available] 1,1 NA [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] NA NA 25678299 25678299 NA NA SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ NA no_errors DTNB HGNC ENSG00000138101 35 NA 0.00 NA NA 50.00 NA NA NA NA 25678299 25678299 NA NA SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ NA no_errors DTNB HGNC NA NA - -KAT2A 2648 genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 NA NA KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; NA ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 NA caC/caT rs536716483,COSM1479581 NA [Not Available] KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 [Not Available] [Not Available] 3/18 [Not Available] hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 [Not Available] A:0.001 A:0 A:0 [Not Available] [Not Available] [Not Available] 0,1 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] LOW NA SNV [Not Available] [Not Available] 0,1 NA 1.65e-05 [Not Available] [Not Available] 0.000231 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] NA 17 40272381 40272381 NA NA SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom NA no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 NA 0.00 30 36 54.55 NA NA NA 17 40272381 40272381 NA NA SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom NA no_errors CTD-2132N18.3 Clone_based_vega_gene NA NA - -MSH3 4437 genome.wustl.edu GRCh37 NA 80024722 80024722 NA Frame_Shift_Del DEL NA NA NA [Not Available] [Not Available] TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 NA NA [Not Available] [Not Available] [Not Available] [Not Available] Unknown Untested Somatic Phase_IV WXS none NA dbGAP Illumina GAIIx [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 NA NA MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; NA ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc [Not Available] NA [Not Available] MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN [Not Available] UPI0000DBEE85 NM_002439.4 [Not Available] [Not Available] 10/24 [Not Available] Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] HIGH NA deletion [Not Available] NA [Not Available] NA [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] [Not Available] NA NA NA 80024722 80024722 NA NA DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C NA no_errors MSH3 HGNC ENSG00000113318 83 NA 0.00 12 NA 14.29 NA NA NA NA 80024722 80024722 NA NA DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C NA no_errors MSH3 HGNC NA NA - diff --git a/core/src/test/scripts/test_data/mutations/meta_mutations_invalid_swissprot_idspec.txt b/core/src/test/scripts/test_data/mutations/meta_mutations_invalid_swissprot_idspec.txt deleted file mode 100644 index fe4ec15ce93..00000000000 --- a/core/src/test/scripts/test_data/mutations/meta_mutations_invalid_swissprot_idspec.txt +++ /dev/null @@ -1,9 +0,0 @@ -cancer_study_identifier: spam -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations -data_filename: spam.maf -swissprot_identifier: namelessly diff --git a/core/src/test/scripts/test_data/study_cancertype_two_files/cancer_type_luad.txt b/core/src/test/scripts/test_data/study_cancertype_two_files/cancer_type_luad.txt deleted file mode 100644 index fd85d7aa3c0..00000000000 --- a/core/src/test/scripts/test_data/study_cancertype_two_files/cancer_type_luad.txt +++ /dev/null @@ -1 +0,0 @@ -luad Lung Adenocarcinoma Gainsboro Lung diff --git a/core/src/test/scripts/test_data/study_cancertype_two_files/cancer_type_lung.txt b/core/src/test/scripts/test_data/study_cancertype_two_files/cancer_type_lung.txt deleted file mode 100644 index fd85d7aa3c0..00000000000 --- a/core/src/test/scripts/test_data/study_cancertype_two_files/cancer_type_lung.txt +++ /dev/null @@ -1 +0,0 @@ -luad Lung Adenocarcinoma Gainsboro Lung diff --git a/core/src/test/scripts/test_data/study_cancertype_two_files/data_samples.txt b/core/src/test/scripts/test_data/study_cancertype_two_files/data_samples.txt deleted file mode 100644 index 50f22028c97..00000000000 --- a/core/src/test/scripts/test_data/study_cancertype_two_files/data_samples.txt +++ /dev/null @@ -1,13 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Cancer Type Cancer Type Detailed -#Identifier to uniquely specify a patient. A unique sample identifier. Subtype description. Disease type. Cancer Type Detailed. -#STRING STRING STRING STRING STRING -#1 1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE CANCER_TYPE CANCER_TYPE_DETAILED -TEST-PAT1 TEST-PAT1-SAMPLE1 Luminal A Cancer_type20 Cancer_type20_Sub16 -TEST-PAT1 TEST-PAT1-SAMPLE2 Luminal B Cancer_type27 Cancer_type27_Sub16 -TEST-PAT1 TEST-PAT1-SAMPLE3 basal-like Cancer_type8 Cancer_type8_Sub13 -TEST-PAT1 TEST-PAT1-SAMPLE4 basal-like Cancer_type17 Cancer_type17_Sub10 -TEST-PAT1 TEST-PAT1-SAMPLE5 Her2 enriched Cancer_type27 Cancer_type27_Sub18 -TEST-PAT1 TEST-PAT1-SAMPLE6 Luminal A Cancer_type7 Cancer_type7_Sub13 -TEST-PAT2 TEST-PAT2-SAMPLE1 Luminal A Cancer_type23 Cancer_type23_Sub3 -TEST-PAT2 TEST-PAT2-SAMPLE2 basal-like Cancer_type7 Cancer_type7_Sub5 diff --git a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_cancer_type_luad.txt b/core/src/test/scripts/test_data/study_cancertype_two_files/meta_cancer_type_luad.txt deleted file mode 100644 index 85307a029b2..00000000000 --- a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_cancer_type_luad.txt +++ /dev/null @@ -1,3 +0,0 @@ -genetic_alteration_type: CANCER_TYPE -datatype: CANCER_TYPE -data_filename: cancer_type_luad.txt diff --git a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_cancer_type_lung.txt b/core/src/test/scripts/test_data/study_cancertype_two_files/meta_cancer_type_lung.txt deleted file mode 100644 index 1eb60505ecd..00000000000 --- a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_cancer_type_lung.txt +++ /dev/null @@ -1,3 +0,0 @@ -genetic_alteration_type: CANCER_TYPE -datatype: CANCER_TYPE -data_filename: cancer_type_lung.txt diff --git a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_samples.txt b/core/src/test/scripts/test_data/study_cancertype_two_files/meta_samples.txt deleted file mode 100644 index 3dba005bab9..00000000000 --- a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_samples.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: spam -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_study.txt b/core/src/test/scripts/test_data/study_cancertype_two_files/meta_study.txt deleted file mode 100644 index 8dd59a7c963..00000000000 --- a/core/src/test/scripts/test_data/study_cancertype_two_files/meta_study.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: spam -type_of_cancer: luad -name: Spam (spam) -description: Baked beans -add_global_case_list: true diff --git a/core/src/test/scripts/test_data/study_es_0/case_lists/cases_cna.txt b/core/src/test/scripts/test_data/study_es_0/case_lists/cases_cna.txt deleted file mode 100644 index 57c32924dc5..00000000000 --- a/core/src/test/scripts/test_data/study_es_0/case_lists/cases_cna.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_cna -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 TEST_SAMPLE_1 TEST_SAMPLE_2 TEST_SAMPLE_3 TEST_SAMPLE_4 TEST_SAMPLE_7 TEST_SAMPLE_8 TEST_SAMPLE_12 TEST_SAMPLE_13 TEST_SAMPLE_14 TEST_SAMPLE_15 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_0/data_cna_log2.txt b/core/src/test/scripts/test_data/study_es_0/data_cna_log2.txt deleted file mode 100644 index f58108baa0d..00000000000 --- a/core/src/test/scripts/test_data/study_es_0/data_cna_log2.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 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TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 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-0.020 -0.353 -0.419 0.080 -0.097 -0.189 -0.574 0.012 -0.122 -0.407 -0.016 -0.470 -0.029 -0.221 0.045 -0.345 -0.600 0.025 -0.151 -0.034 -0.014 0.004 -0.016 -0.116 -0.639 -0.450 -0.644 -0.047 -0.320 -0.080 -0.017 -0.018 -0.135 0.001 0.025 -0.036 0.045 -0.079 0.003 -0.003 -0.063 -0.294 -0.368 -0.009 -0.261 -0.128 -0.029 -0.951 -0.340 diff --git a/core/src/test/scripts/test_data/study_es_0/data_mutational_signature.txt b/core/src/test/scripts/test_data/study_es_0/data_mutational_signature.txt deleted file mode 100644 index 70f21a6d9e3..00000000000 --- a/core/src/test/scripts/test_data/study_es_0/data_mutational_signature.txt +++ /dev/null @@ -1,61 +0,0 @@ -ENTITY_STABLE_ID name description confidenceStatement TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -mean_1 mean_1 mean_1 Signature 1, the aging signature, is detected in this case. 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 -mean_10 mean_10 mean_10 Signature 10, the POLE signature, is detected in this case. It is associated with functions to the exonucleus domain of the POLE gene and enormous mutational burden. Oftentimes MMR signatures 6, 14,16, 20,21 and 26 co-occur with the POLE signature. 0.002709404 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 -mean_11 mean_11 mean_11 Signature 11, the Temozolomide (TMZ) signature, is detected in this case. 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 -mean_12 mean_12 mean_12 Signature 12 is detected in this case. We are not confident that we are able to detect signature 9 in the IMPACT cohort. In the literature it is found in liver cancer. 0.026432791 0.012953054 0.002587003 0.02225923 0.031026708 0.01642898 0.022392184 0.013437576 -mean_13 mean_13 mean_13 Signature 13, the APOBEC signature, is detected in this case. This signature often coccurs with signature 2, the other APOBEC signature. 0.002533773 0.012080707 0.06750656 0.403672528 0.011124 0.007631916 0.018970187 0.006076126 -mean_14 mean_14 mean_14 Signature 14, the signature of simultaneous MMR and POLE dysfunction is detected in this case. This signature usually occurs in cases with the POLE signature (signature 10) and other MMR signatures (6, 15, 20, 21 26). 0.006562519 0.009705064 0.005008429 0.01169992 0.02000342 0.014500145 0.034613722 0.030906098 -mean_15 mean_15 mean_15 Signature 15, a MMR signature, is detected in this case. It is usually associated with high mutational burden. 0.011970661 0.013967505 0.003583145 0.066176992 0.024139531 0.012422269 0.035150854 0.024233274 -mean_16 mean_16 mean_16 Signature 16 is detected in this case. We are not confident that we are able to detect signature 16 in the IMPACT cohort. In the literature it is associated with Liver cancer and alcohol consumption. 0.018075581 0.016174795 0.004085478 0.044836595 0.021500178 0.033960161 0.017962899 0.018849434 -mean_17 mean_17 mean_17 Signature 17 is detected in this case. The aetiology of this signature is unknown. It is predominantly found in gastric cancers. 0.004132642 0.017328434 0.001582939 0.00748642 0.018217142 0.008715209 0.029658706 0.021823903 -mean_18 mean_18 mean_18 Signature 18 is detected in this case. This signature is associated with MUTYH dysfunction and neuroblastoma. 0.005101312 0.027691339 0.078176692 0.007035636 0.016781154 0.226542324 0.030862216 0.05876765 -mean_19 mean_19 mean_19 Signature 19 is detected in this case. We are not confident that we are able to detect signature 19 in the IMPACT cohort. 0.018196853 0.016768977 0.010922822 0.014000266 0.011772131 0.011231503 0.035316214 0.094947481 -mean_2 mean_2 mean_2 Signature 2, the APOBEC signature, is detected in this case. This signature often coccurs with signature 13, the other APOBEC signature. 0.002663685 0.009194336 0.003716748 0.067693367 0.019050891 0.008820839 0.024258107 0.005814542 -mean_20 mean_20 mean_20 Signature 20 is detected in this case. This signature is associated with MMR and usually occurs in cases with the POLE signature (signature 10) and other MMR signatures (6, 14, 15, 21, 26). 0.03066836 0.012905178 0.003569324 0.014119672 0.022474579 0.014813438 0.055457368 0.030155165 -mean_21 mean_21 mean_21 Signature 21 is detected in this case. This signature is associated with MMR and usually co-occurs with other MMR signatures (6, 14, 15, 21, 26). 0.010964959 0.011272353 0.002258851 0.051853446 0.281501917 0.01281546 0.044179589 0.008190074 -mean_22 mean_22 mean_22 Signature 22 is detected in this case. We are not confident that we are able to detect signature 22 in the IMPACT cohort. In the literature it is associated with exposure to Aristolochic Acid. 0.028491957 0.010217024 0.004586289 0.011222009 0.019770493 0.008535491 0.024637853 0.020913163 -mean_23 mean_23 mean_23 Signature 23 is detected in this case. We are not confident that we are able to detect signature 23 in the IMPACT cohort. 0.00396734 0.010046981 0.01277244 0.007964559 0.011004478 0.008391836 0.034836096 0.03286779 -mean_24 mean_24 mean_24 Signature 24 is detected in this case. We are not confident that we are able to detect signature 24 in the IMPACT cohort. In the literature it is associated with aflatoxin exposure. In our cohort we believe it is detected by accident in cases with the smoking signature (signature 4). 0.032792827 0.078245387 0.066150339 0.014742662 0.017324086 0.061761186 0.017605536 0.051708779 -mean_25 mean_25 mean_25 Signature 25 is detected in this case. We are not confident that we are able to detect signature 25 in the IMPACT cohort. 0.011646217 0.048154399 0.03076214 0.013605822 0.038587852 0.013944057 0.023546505 0.037501919 -mean_26 mean_26 mean_26 Signature 26 is detected in this case. This signature is associated with MMR and usually co-occurs with other MMR signatures (6, 14, 15, 20, 21). 0.015537112 0.013825612 0.002464907 0.028813826 0.070298683 0.01999462 0.030799083 0.009143951 -mean_27 mean_27 mean_27 Signature 27 is detected in this case. We are not confident that we are able to detect signature 27 in the IMPACT cohort. 0.003465676 0.012766477 0.004909123 0.00658944 0.010038977 0.008511252 0.023474418 0.009076485 -mean_28 mean_28 mean_28 Signature 28 is detected in this case. We are not confident that we are able to detect signature 28 in the IMPACT cohort. It often co-occurs with signature 28. 0.003755223 0.011667726 0.001739293 0.005067195 0.012723938 0.007772049 0.021565925 0.007837668 -mean_29 mean_29 mean_29 Signature 29, the mutational signature of chewing tobacco is detected in this case. 0.010813509 0.013306168 0.034629865 0.011708457 0.01498353 0.042949985 0.030807758 0.04361619 -mean_3 mean_3 mean_3 Signature 3, the signature of Homologous Recombination Repair deficiency is detected in this case. This signature is most commonly associated with BRCA mutations. 0.012076334 0.399378181 0.058149399 0.024712129 0.022463858 0.069775315 0.022253226 0.023919542 -mean_30 mean_30 mean_30 Signature 30 is detected in this case. We are not confident that we are able to detect signature 30 in the IMPACT cohort. 0.021187235 0.019180665 0.007104322 0.015637667 0.021432941 0.020436345 0.036460701 0.022300431 -mean_4 mean_4 mean_4 Signature 4, the smoking signature is detected in this case. 0.02998631 0.05161966 0.066550323 0.017921856 0.016096543 0.179497941 0.024659786 0.097992724 -mean_5 mean_5 mean_5 Signature 5 is detected in this case. We are not confident that we are able to detect signature 5 in the IMPACT cohort. It is a 'flat' signature--when it is detected it is more likely to be an artefact. In the literature it is associated with age. 0.065346508 0.065105663 0.005317173 0.039082099 0.025806853 0.071908149 0.028765511 0.030413987 -mean_6 mean_6 mean_6 Signature 6, a MMR signature, is detected in this case. It is usually associated with high mutational burden. This signature often co-occurs with other MMR signatures (14, 15, 20, 21 26). 0.215904676 0.009298163 0.004855268 0.020464262 0.030032579 0.01055262 0.094946543 0.100148333 -mean_7 mean_7 mean_7 Signature 7, the UV light signature, is detected in this case. 0.008428142 0.011008883 0.009634254 0.010727403 0.037470752 0.007375711 0.036357093 0.025096172 -mean_8 mean_8 mean_8 Signature 8 is detected in this case. We are not confident that we are able to detect signature 8 in the IMPACT cohort. It is a 'flat' signature--when it is detected it is more likely to be an artefact. In the literature it is associated with HRD defects. 0.009033066 0.04154581 0.483003282 0.014265047 0.029063134 0.028977736 0.026974185 0.031083861 -mean_9 mean_9 mean_9 Signature 9 is detected in this case. We are not confident that we are able to detect signature 9 in the IMPACT cohort. In the literature it is associated with POLH. 0.011252674 0.014910352 0.004377151 0.007775086 0.021277177 0.015334168 0.020390915 0.009638392 -confidence_1 confidence_1 confidence_1 NA 0.653 0.066 0.05 0.129 0.1415 0.079 0.234 0.274 -confidence_10 confidence_10 confidence_10 NA 0.0235 0.0645 0.022 0.0465 0.2595 0.1505 0.1 0.062 -confidence_11 confidence_11 confidence_11 NA 0.0465 0.067 0.115 0.0775 0.0745 0.0535 0.0995 0.098 -confidence_12 confidence_12 confidence_12 NA 0.1375 0.068 0.024 0.1275 0.1165 0.0945 0.09 0.074 -confidence_13 confidence_13 confidence_13 NA 0.0185 0.0685 0.5655 0.936 0.0665 0.052 0.083 0.0515 -confidence_14 confidence_14 confidence_14 NA 0.054 0.067 0.0405 0.0785 0.0845 0.0755 0.119 0.1415 -confidence_15 confidence_15 confidence_15 NA 0.0745 0.0745 0.034 0.284 0.092 0.0745 0.1185 0.1215 -confidence_16 confidence_16 confidence_16 NA 0.1025 0.0795 0.031 0.196 0.1 0.139 0.0815 0.0895 -confidence_17 confidence_17 confidence_17 NA 0.036 0.0825 0.011 0.0605 0.094 0.0555 0.11 0.1105 -confidence_18 confidence_18 confidence_18 NA 0.0445 0.1105 0.297 0.0615 0.069 0.434 0.1055 0.1965 -confidence_19 confidence_19 confidence_19 NA 0.0955 0.073 0.0885 0.086 0.0725 0.065 0.114 0.2685 -confidence_2 confidence_2 confidence_2 NA 0.0235 0.0525 0.0325 0.293 0.0945 0.057 0.1015 0.0415 -confidence_20 confidence_20 confidence_20 NA 0.14 0.0745 0.0305 0.0835 0.101 0.0725 0.1505 0.1325 -confidence_21 confidence_21 confidence_21 NA 0.0725 0.072 0.0215 0.24 0.5255 0.09 0.131 0.0635 -confidence_22 confidence_22 confidence_22 NA 0.2335 0.0685 0.0415 0.09 0.0865 0.063 0.103 0.126 -confidence_23 confidence_23 confidence_23 NA 0.0365 0.0605 0.12 0.0635 0.064 0.0615 0.112 0.1525 -confidence_24 confidence_24 confidence_24 NA 0.1975 0.1925 0.297 0.0905 0.081 0.215 0.08 0.195 -confidence_25 confidence_25 confidence_25 NA 0.0695 0.134 0.132 0.083 0.123 0.079 0.094 0.1365 -confidence_26 confidence_26 confidence_26 NA 0.0955 0.073 0.023 0.1475 0.183 0.0995 0.109 0.067 -confidence_27 confidence_27 confidence_27 NA 0.0305 0.0795 0.05 0.053 0.0675 0.0605 0.0955 0.064 -confidence_28 confidence_28 confidence_28 NA 0.0325 0.077 0.0135 0.044 0.0785 0.0555 0.1 0.0605 -confidence_29 confidence_29 confidence_29 NA 0.0835 0.0725 0.172 0.074 0.08 0.138 0.111 0.164 -confidence_3 confidence_3 confidence_3 NA 0.083 0.629 0.1835 0.12 0.101 0.21 0.0845 0.1215 -confidence_30 confidence_30 confidence_30 NA 0.123 0.096 0.0625 0.091 0.0995 0.107 0.1145 0.107 -confidence_4 confidence_4 confidence_4 NA 0.1685 0.1485 0.2155 0.1005 0.08 0.382 0.0995 0.2815 -confidence_5 confidence_5 confidence_5 NA 0.218 0.1645 0.0445 0.1665 0.1045 0.187 0.114 0.1155 -confidence_6 confidence_6 confidence_6 NA 0.4325 0.062 0.043 0.1275 0.113 0.069 0.2225 0.2885 -confidence_7 confidence_7 confidence_7 NA 0.0705 0.075 0.0975 0.0765 0.137 0.0545 0.1105 0.1225 -confidence_8 confidence_8 confidence_8 NA 0.07 0.132 0.859 0.0935 0.106 0.123 0.106 0.131 -confidence_9 confidence_9 confidence_9 NA 0.081 0.0775 0.033 0.0615 0.0845 0.082 0.09 0.064 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_0/result_report.html b/core/src/test/scripts/test_data/study_es_0/result_report.html deleted file mode 100644 index 8a39412f12d..00000000000 --- a/core/src/test/scripts/test_data/study_es_0/result_report.html +++ /dev/null @@ -1,3195 +0,0 @@ - - - - - - - - - - - - - cBioPortal validation report: study in 'test_data/study_es_0/' - - - - - -
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    Study directory:
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    Info48–No Entrez gene id or gene symbol provided for site 2. Assuming either the intragenic, deletion, duplication, translocation or inversion variant–
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    Info––Setting reference genome to human (GRCh37, hg19)–
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    Legend

    -
    -
    -

    - Click on a filename below to see a table of messages about the data - in the file. The colors in the tables have the following meanings: -

    - - - - - - - - - - - - - - - - - - - -
    ErrorError: cBioPortal will not know how to load this, please revise or remove
    WarningWarning: possible cause of confusion, please check whether this is intended
    InfoInfo: this looks good, no action required
    DebugVerbose output: details on the progress of the validation script
    -
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    -
    - - \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_0/study_tags.yml b/core/src/test/scripts/test_data/study_es_0/study_tags.yml deleted file mode 100644 index 2d1cb9e3695..00000000000 --- a/core/src/test/scripts/test_data/study_es_0/study_tags.yml +++ /dev/null @@ -1,18 +0,0 @@ -Analyst: - name: Jack - email: jack@xyz.com -Loaded by: Jill -Load id: 34 -git id: xxqaygqertqsg98qhpughqer -Analysis Id: 7asdlnagsd98gfaqsgf -Load Date: July 12, 2018 -Data Source: Study XY123-456 -Jira Ticket: Foo-1 -Confluence URL: http://myserver/wxyz -Study sponsors: - - - name: john - email: john@@xyz.com - - - name: jane - email: jane@@xyz.com diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_cna.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_cna.txt deleted file mode 100644 index 60ecd245fed..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_cna.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_cna -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 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TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 TEST_SAMPLE_1 TEST_SAMPLE_2 TEST_SAMPLE_3 TEST_SAMPLE_4 TEST_SAMPLE_7 TEST_SAMPLE_8 TEST_SAMPLE_12 TEST_SAMPLE_13 TEST_SAMPLE_14 TEST_SAMPLE_15 diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_custom.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_custom.txt deleted file mode 100644 index 107f7180a40..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_custom.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_custom -case_list_name: this is an optional custom case list -case_list_description: this is an optional custom case list -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 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TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_sequenced.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_sequenced.txt deleted file mode 100644 index 35914653edb..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_sequenced.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_sequenced -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SB-02 TCGA-A1-A0SK-01 TCGA-A2-A04P-01 TCGA-A2-A0CM-01 TCGA-AR-A1AR-01 TCGA-B6-A0I6-01 TCGA-B6-A0WX-01 TCGA-BH-A0E0-01 TCGA-BH-A0HL-01 TCGA-BH-A18K-01 TCGA-BH-A18V-01 TCGA-BH-A1F0-01 TCGA-GI-A2C8-01 TEST_SAMPLE_1 TEST_SAMPLE_2 TEST_SAMPLE_3 TEST_SAMPLE_4 TEST_SAMPLE_5 TEST_SAMPLE_6 TEST_SAMPLE_10 TEST_SAMPLE_11 TEST_SAMPLE_12 TEST_SAMPLE_13 TEST_SAMPLE_14 TEST_SAMPLE_15 TEST-A2B8-01 TEST-A2FF-01 TEST_SAMPLE_SOMATIC_HOMOZYGOUS TEST_SAMPLE_SOMATIC_HETEROZYGOUS TEST_SAMPLE_SOMATIC_UNDEFINED diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_test.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_test.txt deleted file mode 100644 index e516ddbeb10..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_test.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_testprofiled -case_list_name: Test profiled samples -case_list_description: This case lists to test functionality of profiled/gene panels for mutations, fusions and CNA -case_list_ids: TEST_SAMPLE_1 TEST_SAMPLE_2 TEST_SAMPLE_3 TEST_SAMPLE_4 TEST_SAMPLE_5 TEST_SAMPLE_6 TEST_SAMPLE_7 TEST_SAMPLE_8 TEST_SAMPLE_9 TEST_SAMPLE_10 TEST_SAMPLE_11 TEST_SAMPLE_12 TEST_SAMPLE_13 TEST_SAMPLE_14 TEST_SAMPLE_15 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_clinical_samples.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_clinical_samples.txt deleted file mode 100644 index 82a6dc99fd9..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_clinical_samples.txt +++ /dev/null @@ -1,850 +0,0 @@ -#Patient Identifier Sample Identifier Subtype -#Patient identifier Sample identifier Subtype description -#STRING STRING STRING -#1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like -TCGA-A7-A13E TCGA-A7-A13E-01 -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like -TCGA-D8-A142 TCGA-D8-A142-01 basal-like -TCGA-D8-A143 TCGA-D8-A143-01 NA -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like -TCGA-A2-A04U TCGA-A2-A04U-01 NA -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like -TCGA-A2-A04T TCGA-A2-A04T-01 NA -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like -TCGA-AO-A128 TCGA-AO-A128-01 NA -TCGA-AO-A129 TCGA-AO-A129-01 basal-like -TCGA-AO-A124 TCGA-AO-A124-01 basal-like -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like -TCGA-BH-A18G TCGA-BH-A18G-01 NA -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like -TCGA-C8-A131 TCGA-C8-A131-01 basal-like -TCGA-C8-A134 TCGA-C8-A134-01 basal-like -TCGA-D8-A147 TCGA-D8-A147-01 basal-like -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like -TCGA-E2-A150 TCGA-E2-A150-01 basal-like -TCGA-E2-A158 TCGA-E2-A158-01 basal-like -TCGA-E2-A159 TCGA-E2-A159-01 basal-like -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A -TCGA-A7-A0CD TCGA-A7-A0CD-01 Luminal A -TCGA-D8-A145 TCGA-D8-A145-01 Luminal A -TCGA-BH-A0HP TCGA-BH-A0HP-01 Luminal A -TCGA-BH-A0DK TCGA-BH-A0DK-01 Luminal A -TCGA-BH-A0E2 TCGA-BH-A0E2-01 Luminal A -TCGA-A2-A0YI TCGA-A2-A0YI-01 Luminal A -TCGA-A2-A0YL TCGA-A2-A0YL-01 Luminal A -TCGA-AO-A0JG TCGA-AO-A0JG-01 Luminal A -TCGA-A2-A0YF TCGA-A2-A0YF-01 Luminal A -TCGA-BH-A0DP TCGA-BH-A0DP-01 Luminal A -TCGA-BH-A0E1 TCGA-BH-A0E1-01 Luminal A -TCGA-A2-A0T5 TCGA-A2-A0T5-01 Luminal A -TCGA-A2-A0T6 TCGA-A2-A0T6-01 Luminal A -TCGA-BH-A0HI TCGA-BH-A0HI-01 Luminal A -TCGA-A2-A0T7 TCGA-A2-A0T7-01 Luminal A -TCGA-BH-A0BJ TCGA-BH-A0BJ-01 Luminal A -TCGA-BH-A0H7 TCGA-BH-A0H7-01 Luminal A -TCGA-BH-A0HF TCGA-BH-A0HF-01 Luminal A -TCGA-BH-A0EB TCGA-BH-A0EB-01 Luminal A -TCGA-BH-A0H6 TCGA-BH-A0H6-01 Luminal A -TCGA-A2-A0YD TCGA-A2-A0YD-01 Luminal A -TCGA-BH-A0HB TCGA-BH-A0HB-01 Luminal A -TCGA-BH-A0HX TCGA-BH-A0HX-01 Luminal A -TCGA-AO-A12H TCGA-AO-A12H-01 Luminal A -TCGA-E2-A10E TCGA-E2-A10E-01 Luminal A -TCGA-A2-A0D3 TCGA-A2-A0D3-01 Luminal A -TCGA-E2-A10F TCGA-E2-A10F-01 Luminal A -TCGA-AO-A03V TCGA-AO-A03V-01 Luminal A -TCGA-A2-A0EW TCGA-A2-A0EW-01 Luminal A -TCGA-BH-A0GY TCGA-BH-A0GY-01 Luminal A -TCGA-A2-A0EV TCGA-A2-A0EV-01 Luminal A -TCGA-BH-A0BC TCGA-BH-A0BC-01 Luminal A -TCGA-A2-A0YC TCGA-A2-A0YC-01 Luminal A -TCGA-A2-A0EU TCGA-A2-A0EU-01 Luminal A -TCGA-A2-A0ET TCGA-A2-A0ET-01 Luminal A -TCGA-A2-A04Y TCGA-A2-A04Y-01 Luminal A -TCGA-BH-A0HQ TCGA-BH-A0HQ-01 Luminal A -TCGA-A2-A0ES TCGA-A2-A0ES-01 Luminal A -TCGA-BH-A0BA TCGA-BH-A0BA-01 Luminal A -TCGA-E2-A10B TCGA-E2-A10B-01 Luminal A -TCGA-BH-A0B1 TCGA-BH-A0B1-01 Luminal A -TCGA-BH-A0DH TCGA-BH-A0DH-01 Luminal A -TCGA-BH-A0B4 TCGA-BH-A0B4-01 Luminal A -TCGA-BH-A0H9 TCGA-BH-A0H9-01 Luminal A -TCGA-AO-A0J9 TCGA-AO-A0J9-01 Luminal A -TCGA-AO-A12G TCGA-AO-A12G-01 Luminal A -TCGA-A2-A0SY TCGA-A2-A0SY-01 Luminal A -TCGA-BH-A0E7 TCGA-BH-A0E7-01 Luminal A -TCGA-AO-A03M TCGA-AO-A03M-01 Luminal A -TCGA-BH-A0BV TCGA-BH-A0BV-01 Luminal A -TCGA-BH-A0B8 TCGA-BH-A0B8-01 Luminal A -TCGA-A2-A0CZ TCGA-A2-A0CZ-01 Luminal A -TCGA-A2-A0SU TCGA-A2-A0SU-01 Luminal A -TCGA-AO-A12E TCGA-AO-A12E-01 Luminal A -TCGA-E2-A106 TCGA-E2-A106-01 Luminal A -TCGA-A2-A0CV TCGA-A2-A0CV-01 Luminal A -TCGA-AO-A12C TCGA-AO-A12C-01 Luminal A -TCGA-B6-A0RG TCGA-B6-A0RG-01 Luminal A -TCGA-A2-A0CS TCGA-A2-A0CS-01 Luminal A -TCGA-A2-A0EO TCGA-A2-A0EO-01 Luminal A -TCGA-A2-A0CQ TCGA-A2-A0CQ-01 Luminal A -TCGA-A2-A0EN TCGA-A2-A0EN-01 Luminal A -TCGA-AO-A12A TCGA-AO-A12A-01 Luminal A -TCGA-A2-A0CP TCGA-A2-A0CP-01 Luminal A -TCGA-AO-A126 TCGA-AO-A126-01 Luminal A -TCGA-AO-A125 TCGA-AO-A125-01 Luminal A -TCGA-A2-A0EM TCGA-A2-A0EM-01 Luminal A -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A -TCGA-AQ-A04L TCGA-AQ-A04L-01 Luminal A -TCGA-B6-A0IO TCGA-B6-A0IO-01 Luminal A -TCGA-B6-A0IP TCGA-B6-A0IP-01 Luminal A -TCGA-B6-A0WZ TCGA-B6-A0WZ-01 Luminal A -TCGA-B6-A0I5 TCGA-B6-A0I5-01 Luminal A -TCGA-B6-A0RV TCGA-B6-A0RV-01 Luminal A -TCGA-B6-A0RO TCGA-B6-A0RO-01 Luminal A -TCGA-B6-A0RN TCGA-B6-A0RN-01 Luminal A -TCGA-B6-A0WT TCGA-B6-A0WT-01 Luminal A -TCGA-B6-A0IA TCGA-B6-A0IA-01 Luminal A -TCGA-B6-A0RI TCGA-B6-A0RI-01 Luminal A -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A -TCGA-A2-A0EX TCGA-A2-A0EX-01 Luminal A -TCGA-AO-A0JJ TCGA-AO-A0JJ-01 Luminal A -TCGA-E2-A105 TCGA-E2-A105-01 Luminal A -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A -TCGA-A8-A06P TCGA-A8-A06P-01 Luminal A -TCGA-A8-A06T TCGA-A8-A06T-01 Luminal A -TCGA-A8-A06Y TCGA-A8-A06Y-01 Luminal A -TCGA-A8-A07E TCGA-A8-A07E-01 Luminal A -TCGA-A8-A07F TCGA-A8-A07F-01 Luminal A -TCGA-A8-A07G TCGA-A8-A07G-01 Luminal A -TCGA-A8-A07J TCGA-A8-A07J-01 Luminal A -TCGA-A8-A07P TCGA-A8-A07P-01 Luminal A -TCGA-A8-A083 TCGA-A8-A083-01 Luminal A -TCGA-A8-A086 TCGA-A8-A086-01 Luminal A -TCGA-A8-A08A TCGA-A8-A08A-01 Luminal A -TCGA-A8-A08C TCGA-A8-A08C-01 Luminal A -TCGA-A8-A08O TCGA-A8-A08O-01 Luminal A -TCGA-A8-A08T TCGA-A8-A08T-01 Luminal A -TCGA-A8-A08Z TCGA-A8-A08Z-01 Luminal A -TCGA-A8-A090 TCGA-A8-A090-01 Luminal A -TCGA-A8-A091 TCGA-A8-A091-01 Luminal A -TCGA-A8-A093 TCGA-A8-A093-01 Luminal A -TCGA-A8-A099 TCGA-A8-A099-01 Luminal A -TCGA-A8-A09A TCGA-A8-A09A-01 Luminal A -TCGA-A8-A09B TCGA-A8-A09B-01 Luminal A -TCGA-A8-A09T TCGA-A8-A09T-01 Luminal A -TCGA-A8-A09V TCGA-A8-A09V-01 Luminal A -TCGA-A8-A0A1 TCGA-A8-A0A1-01 Luminal A -TCGA-A8-A0A2 TCGA-A8-A0A2-01 Luminal A -TCGA-A8-A0A4 TCGA-A8-A0A4-01 Luminal A -TCGA-A8-A0A6 TCGA-A8-A0A6-01 Luminal A -TCGA-A8-A0AD TCGA-A8-A0AD-01 Luminal A -TCGA-AN-A03X TCGA-AN-A03X-01 Luminal A -TCGA-AN-A046 TCGA-AN-A046-01 Luminal A -TCGA-AN-A04A TCGA-AN-A04A-01 Luminal A -TCGA-AN-A0FD TCGA-AN-A0FD-01 Luminal A -TCGA-AN-A0FN TCGA-AN-A0FN-01 Luminal A -TCGA-AN-A0FS TCGA-AN-A0FS-01 Luminal A -TCGA-AN-A0FT TCGA-AN-A0FT-01 Luminal A -TCGA-AN-A0FW TCGA-AN-A0FW-01 Luminal A -TCGA-AN-A0FZ TCGA-AN-A0FZ-01 Luminal A -TCGA-AN-A0XL TCGA-AN-A0XL-01 Luminal A -TCGA-AN-A0XN TCGA-AN-A0XN-01 Luminal A -TCGA-AN-A0XO TCGA-AN-A0XO-01 Luminal A -TCGA-AN-A0XP TCGA-AN-A0XP-01 Luminal A -TCGA-AN-A0XS TCGA-AN-A0XS-01 Luminal A -TCGA-AN-A0XT TCGA-AN-A0XT-01 Luminal A -TCGA-AN-A0XV TCGA-AN-A0XV-01 Luminal A -TCGA-AR-A0TW TCGA-AR-A0TW-01 Luminal A -TCGA-AR-A1AK TCGA-AR-A1AK-01 Luminal A -TCGA-AR-A1AL TCGA-AR-A1AL-01 Luminal A -TCGA-AR-A1AN TCGA-AR-A1AN-01 Luminal A -TCGA-AR-A1AP TCGA-AR-A1AP-01 Luminal A -TCGA-AR-A1AS TCGA-AR-A1AS-01 Luminal A -TCGA-AR-A1AU TCGA-AR-A1AU-01 Luminal A -TCGA-AR-A1AW TCGA-AR-A1AW-01 Luminal A -TCGA-AR-A1AX TCGA-AR-A1AX-01 Luminal A -TCGA-BH-A0AZ TCGA-BH-A0AZ-01 Luminal A -TCGA-BH-A0B0 TCGA-BH-A0B0-01 Luminal A -TCGA-BH-A0BM TCGA-BH-A0BM-01 Luminal A -TCGA-BH-A0BO TCGA-BH-A0BO-01 Luminal A -TCGA-BH-A0BP TCGA-BH-A0BP-01 Luminal A -TCGA-BH-A0BQ TCGA-BH-A0BQ-01 Luminal A -TCGA-BH-A0BR TCGA-BH-A0BR-01 Luminal A -TCGA-BH-A0BS TCGA-BH-A0BS-01 Luminal A -TCGA-BH-A0BT TCGA-BH-A0BT-01 Luminal A -TCGA-BH-A0C1 TCGA-BH-A0C1-01 Luminal A -TCGA-BH-A0DE TCGA-BH-A0DE-01 Luminal A -TCGA-BH-A0DG TCGA-BH-A0DG-01 Luminal A -TCGA-BH-A0DI TCGA-BH-A0DI-01 Luminal A -TCGA-BH-A0DO TCGA-BH-A0DO-01 Luminal A -TCGA-BH-A0DT TCGA-BH-A0DT-01 Luminal A -TCGA-BH-A0DX TCGA-BH-A0DX-01 Luminal A -TCGA-BH-A0E9 TCGA-BH-A0E9-01 Luminal A -TCGA-BH-A0EI TCGA-BH-A0EI-01 Luminal A -TCGA-BH-A0H3 TCGA-BH-A0H3-01 Luminal A -TCGA-BH-A0H5 TCGA-BH-A0H5-01 Luminal A -TCGA-BH-A0HA TCGA-BH-A0HA-01 Luminal A -TCGA-BH-A0W4 TCGA-BH-A0W4-01 Luminal A -TCGA-BH-A0W5 TCGA-BH-A0W5-01 Luminal A -TCGA-BH-A0W7 TCGA-BH-A0W7-01 Luminal A -TCGA-BH-A18H TCGA-BH-A18H-01 Luminal A -TCGA-BH-A18I TCGA-BH-A18I-01 Luminal A -TCGA-C8-A12N TCGA-C8-A12N-01 Luminal A -TCGA-C8-A12O TCGA-C8-A12O-01 Luminal A -TCGA-C8-A12Y TCGA-C8-A12Y-01 Luminal A -TCGA-C8-A132 TCGA-C8-A132-01 Luminal A -TCGA-C8-A133 TCGA-C8-A133-01 Luminal A -TCGA-C8-A1HI TCGA-C8-A1HI-01 Luminal A -TCGA-D8-A141 TCGA-D8-A141-01 Luminal A -TCGA-E2-A14Q TCGA-E2-A14Q-01 Luminal A -TCGA-E2-A14T TCGA-E2-A14T-01 Luminal A -TCGA-E2-A14Z TCGA-E2-A14Z-01 Luminal A -TCGA-E2-A153 TCGA-E2-A153-01 Luminal A -TCGA-E2-A154 TCGA-E2-A154-01 Luminal A -TCGA-E2-A156 TCGA-E2-A156-01 Luminal A -TCGA-E2-A15C TCGA-E2-A15C-01 Luminal A -TCGA-E2-A15D TCGA-E2-A15D-01 Luminal A -TCGA-E2-A15E TCGA-E2-A15E-01 Luminal A -TCGA-E2-A15F TCGA-E2-A15F-01 Luminal A -TCGA-E2-A15G TCGA-E2-A15G-01 Luminal A -TCGA-E2-A15H TCGA-E2-A15H-01 Luminal A -TCGA-E2-A15I TCGA-E2-A15I-01 Luminal A -TCGA-E2-A15J TCGA-E2-A15J-01 Luminal A -TCGA-E2-A15O TCGA-E2-A15O-01 Luminal A -TCGA-E2-A15P TCGA-E2-A15P-01 Luminal A -TCGA-E2-A15R TCGA-E2-A15R-01 Luminal A -TCGA-E2-A1B1 TCGA-E2-A1B1-01 Luminal A -TCGA-E2-A1B4 TCGA-E2-A1B4-01 Luminal A -TCGA-E2-A1B6 TCGA-E2-A1B6-01 Luminal A -TCGA-E2-A1BC TCGA-E2-A1BC-01 Luminal A -TCGA-E2-A1BD TCGA-E2-A1BD-01 Luminal A -TCGA-A2-A0SV TCGA-A2-A0SV-01 Luminal B -TCGA-AO-A03O TCGA-AO-A03O-01 Luminal B -TCGA-A2-A0SW TCGA-A2-A0SW-01 Luminal B -TCGA-B6-A0WW TCGA-B6-A0WW-01 Luminal B -TCGA-BH-A18J TCGA-BH-A18J-01 Luminal B -TCGA-BH-A18L TCGA-BH-A18L-01 Luminal B -TCGA-A8-A06X TCGA-A8-A06X-01 Luminal B -TCGA-B6-A0IC TCGA-B6-A0IC-01 Luminal B -TCGA-BH-A18U TCGA-BH-A18U-01 Luminal B -TCGA-BH-A1EW TCGA-BH-A1EW-01 Luminal B -TCGA-AR-A0TY TCGA-AR-A0TY-01 Luminal B -TCGA-B6-A0X5 TCGA-B6-A0X5-01 Luminal B -TCGA-B6-A0WV TCGA-B6-A0WV-01 Luminal B -TCGA-B6-A0RL TCGA-B6-A0RL-01 Luminal B -TCGA-AR-A0U2 TCGA-AR-A0U2-01 Luminal B -TCGA-B6-A0IB TCGA-B6-A0IB-01 Luminal B -TCGA-AO-A0J7 TCGA-AO-A0J7-01 Luminal B -TCGA-AO-A0J3 TCGA-AO-A0J3-01 Luminal B -TCGA-D8-A13Y TCGA-D8-A13Y-01 Luminal B -TCGA-A7-A13F TCGA-A7-A13F-01 Luminal B -TCGA-BH-A0HU TCGA-BH-A0HU-01 Luminal B -TCGA-D8-A140 TCGA-D8-A140-01 Luminal B -TCGA-A7-A0CJ TCGA-A7-A0CJ-01 Luminal B -TCGA-AQ-A04H TCGA-AQ-A04H-01 Luminal B -TCGA-BH-A0H0 TCGA-BH-A0H0-01 Luminal B -TCGA-BH-A0BD TCGA-BH-A0BD-01 Luminal B -TCGA-A2-A0T3 TCGA-A2-A0T3-01 Luminal B -TCGA-A2-A0T4 TCGA-A2-A0T4-01 Luminal B -TCGA-A2-A0YH TCGA-A2-A0YH-01 Luminal B -TCGA-A2-A0YG TCGA-A2-A0YG-01 Luminal B -TCGA-A2-A0EY TCGA-A2-A0EY-01 Luminal B -TCGA-A2-A0D4 TCGA-A2-A0D4-01 Luminal B -TCGA-BH-A0AY TCGA-BH-A0AY-01 Luminal B -TCGA-E2-A107 TCGA-E2-A107-01 Luminal B -TCGA-AO-A0JI TCGA-AO-A0JI-01 Luminal B -TCGA-E2-A10C TCGA-E2-A10C-01 Luminal B -TCGA-E2-A10A TCGA-E2-A10A-01 Luminal B -TCGA-BH-A0C0 TCGA-BH-A0C0-01 Luminal B -TCGA-E2-A109 TCGA-E2-A109-01 Luminal B -TCGA-AO-A0JC TCGA-AO-A0JC-01 Luminal B -TCGA-BH-A0HW TCGA-BH-A0HW-01 Luminal B -TCGA-AO-A0JD TCGA-AO-A0JD-01 Luminal B -TCGA-AO-A0JM TCGA-AO-A0JM-01 Luminal B -TCGA-A2-A0CW TCGA-A2-A0CW-01 Luminal B -TCGA-A2-A0ER TCGA-A2-A0ER-01 Luminal B -TCGA-A2-A0CT TCGA-A2-A0CT-01 Luminal B -TCGA-AO-A12B TCGA-AO-A12B-01 Luminal B -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B -TCGA-B6-A0IM TCGA-B6-A0IM-01 Luminal B -TCGA-AO-A03P TCGA-AO-A03P-01 Luminal B -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B -TCGA-A8-A06N TCGA-A8-A06N-01 Luminal B -TCGA-A8-A06O TCGA-A8-A06O-01 Luminal B -TCGA-A8-A06Q TCGA-A8-A06Q-01 Luminal B -TCGA-A8-A06R TCGA-A8-A06R-01 Luminal B -TCGA-A8-A06Z TCGA-A8-A06Z-01 Luminal B -TCGA-A8-A079 TCGA-A8-A079-01 Luminal B -TCGA-A8-A07L TCGA-A8-A07L-01 Luminal B -TCGA-A8-A07S TCGA-A8-A07S-01 Luminal B -TCGA-A8-A07W TCGA-A8-A07W-01 Luminal B -TCGA-A8-A07Z TCGA-A8-A07Z-01 Luminal B -TCGA-A8-A082 TCGA-A8-A082-01 Luminal B -TCGA-A8-A084 TCGA-A8-A084-01 Luminal B -TCGA-A8-A085 TCGA-A8-A085-01 Luminal B -TCGA-A8-A08F TCGA-A8-A08F-01 Luminal B -TCGA-A8-A08G TCGA-A8-A08G-01 Luminal B -TCGA-A8-A08I TCGA-A8-A08I-01 Luminal B -TCGA-A8-A08P TCGA-A8-A08P-01 Luminal B -TCGA-A8-A095 TCGA-A8-A095-01 Luminal B -TCGA-A8-A096 TCGA-A8-A096-01 Luminal B -TCGA-A8-A097 TCGA-A8-A097-01 Luminal B -TCGA-A8-A09C TCGA-A8-A09C-01 Luminal B -TCGA-A8-A09D TCGA-A8-A09D-01 Luminal B -TCGA-A8-A09I TCGA-A8-A09I-01 Luminal B -TCGA-A8-A09M TCGA-A8-A09M-01 Luminal B -TCGA-A8-A09N TCGA-A8-A09N-01 Luminal B -TCGA-A8-A09Q TCGA-A8-A09Q-01 Luminal B -TCGA-A8-A09R TCGA-A8-A09R-01 Luminal B -TCGA-A8-A09W TCGA-A8-A09W-01 Luminal B -TCGA-A8-A09Z TCGA-A8-A09Z-01 Luminal B -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B -TCGA-AO-A03U TCGA-AO-A03U-01 NA -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA -TCGA-AO-A03R TCGA-AO-A03R-01 NA -TCGA-AO-A03T TCGA-AO-A03T-01 NA -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA -TCGA-BH-A203 TCGA-BH-A203-01 NA -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA -TCGA-BH-A208 TCGA-BH-A208-01 NA -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA -TCGA-BH-A204 TCGA-BH-A204-01 NA -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA -TCGA-AR-A256 TCGA-AR-A256-01 NA -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA -TCGA-BH-A209 TCGA-BH-A209-01 NA -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA -TCGA-A7-A13G TCGA-A7-A13G-01 NA -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA -TCGA-A7-A26E TCGA-A7-A26E-01 NA -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-02 NA -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA -TCGA-A2-A259 TCGA-A2-A259-01 NA -TCGA-A2-A25A TCGA-A2-A25A-01 NA -TCGA-A2-A25B TCGA-A2-A25B-01 NA -TCGA-A2-A25C TCGA-A2-A25C-01 NA -TCGA-A2-A25D TCGA-A2-A25D-01 NA -TCGA-A2-A25E TCGA-A2-A25E-01 NA -TCGA-A2-A25F TCGA-A2-A25F-01 NA -TCGA-A7-A26F TCGA-A7-A26F-01 NA -TCGA-A7-A26G TCGA-A7-A26G-01 NA -TCGA-A7-A26H TCGA-A7-A26H-01 NA -TCGA-A7-A26I TCGA-A7-A26I-01 NA -TCGA-A7-A26J TCGA-A7-A26J-01 NA -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B -TEST-A23C TEST-A23C-01 NA -TEST-A23E TEST-A23E-01 NA -TEST-A23H TEST-A23H-01 NA -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA -TCGA-AR-A24H TCGA-AR-A24H-01 NA -TCGA-AR-A24K TCGA-AR-A24K-01 NA -TCGA-AR-A24L TCGA-AR-A24L-01 NA -TCGA-AR-A24M TCGA-AR-A24M-01 NA -TCGA-AR-A24N TCGA-AR-A24N-01 NA -TCGA-AR-A24O TCGA-AR-A24O-01 NA -TCGA-AR-A24P TCGA-AR-A24P-01 NA -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA -TCGA-AR-A24R TCGA-AR-A24R-01 NA -TCGA-AR-A24S TCGA-AR-A24S-01 NA -TCGA-AR-A24T TCGA-AR-A24T-01 NA -TCGA-AR-A24U TCGA-AR-A24U-01 NA -TCGA-AR-A24V TCGA-AR-A24V-01 NA -TCGA-AR-A24X TCGA-AR-A24X-01 NA -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA -TCGA-AR-A250 TCGA-AR-A250-01 NA -TCGA-AR-A251 TCGA-AR-A251-01 NA -TCGA-AR-A252 TCGA-AR-A252-01 NA -TCGA-AR-A254 TCGA-AR-A254-01 NA -TCGA-AR-A255 TCGA-AR-A255-01 NA -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA -TCGA-BH-A201 TCGA-BH-A201-01 NA -TCGA-BH-A202 TCGA-BH-A202-01 NA -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA -TCGA-C8-A26V TCGA-C8-A26V-01 NA -TCGA-C8-A26W TCGA-C8-A26W-01 NA -TCGA-C8-A26X TCGA-C8-A26X-01 NA -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA -TCGA-C8-A273 TCGA-C8-A273-01 NA -TCGA-C8-A274 TCGA-C8-A274-01 NA -TCGA-C8-A275 TCGA-C8-A275-01 NA -TCGA-C8-A278 TCGA-C8-A278-01 NA -TCGA-C8-A27A TCGA-C8-A27A-01 NA -TCGA-C8-A27B TCGA-C8-A27B-01 NA -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA -TCGA-D8-A27E TCGA-D8-A27E-01 NA -TCGA-D8-A27F TCGA-D8-A27F-01 NA -TCGA-D8-A27G TCGA-D8-A27G-01 NA -TCGA-D8-A27H TCGA-D8-A27H-01 NA -TCGA-D8-A27I TCGA-D8-A27I-01 NA -TCGA-D8-A27K TCGA-D8-A27K-01 NA -TCGA-D8-A27L TCGA-D8-A27L-01 NA -TCGA-D8-A27M TCGA-D8-A27M-01 NA -TCGA-D8-A27N TCGA-D8-A27N-01 NA -TCGA-D8-A27P TCGA-D8-A27P-01 NA -TCGA-D8-A27R TCGA-D8-A27R-01 NA -TCGA-D8-A27T TCGA-D8-A27T-01 NA -TCGA-D8-A27V TCGA-D8-A27V-01 NA -TCGA-D8-A27W TCGA-D8-A27W-01 NA -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA -TCGA-E2-A1II TCGA-E2-A1II-01 NA -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA -TCGA-E9-A226 TCGA-E9-A226-01 NA -TCGA-E9-A227 TCGA-E9-A227-01 NA -TCGA-E9-A228 TCGA-E9-A228-01 NA -TCGA-E9-A229 TCGA-E9-A229-01 NA -TCGA-E9-A22A TCGA-E9-A22A-01 NA -TCGA-E9-A22B TCGA-E9-A22B-01 NA -TCGA-E9-A22D TCGA-E9-A22D-01 NA -TCGA-E9-A22E TCGA-E9-A22E-01 NA -TCGA-E9-A22G TCGA-E9-A22G-01 NA -TCGA-E9-A22H TCGA-E9-A22H-01 NA -TCGA-E9-A243 TCGA-E9-A243-01 NA -TCGA-E9-A244 TCGA-E9-A244-01 NA -TCGA-E9-A245 TCGA-E9-A245-01 NA -TCGA-E9-A247 TCGA-E9-A247-01 NA -TCGA-E9-A248 TCGA-E9-A248-01 NA -TCGA-E9-A249 TCGA-E9-A249-01 NA -TCGA-E9-A24A TCGA-E9-A24A-01 NA -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA -TCGA-AR-A24W TCGA-AR-A24W-01 NA -TEST-A2B8 TEST-A2B8-01 NA -TEST-A2FF TEST-A2FF-01 NA -TEST-A2FB TEST-A2FB-01 NA -TEST-A2FG TEST-A2FG-01 NA -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA -TCGA-E9-A295 TCGA-E9-A295-01 NA -TCGA-E2-A15E TCGA-E2-A15E-06 NA -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA -TEST_PATIENT_1 TEST_SAMPLE_1 NA -TEST_PATIENT_2 TEST_SAMPLE_2 NA -TEST_PATIENT_3 TEST_SAMPLE_3 NA -TEST_PATIENT_4 TEST_SAMPLE_4 NA -TEST_PATIENT_5 TEST_SAMPLE_5 NA -TEST_PATIENT_6 TEST_SAMPLE_6 NA -TEST_PATIENT_7 TEST_SAMPLE_7 NA -TEST_PATIENT_8 TEST_SAMPLE_8 NA -TEST_PATIENT_9 TEST_SAMPLE_9 NA -TEST_PATIENT_10 TEST_SAMPLE_10 NA -TEST_PATIENT_11 TEST_SAMPLE_11 NA -TEST_PATIENT_12 TEST_SAMPLE_12 NA -TEST_PATIENT_13 TEST_SAMPLE_13 NA -TEST_PATIENT_14 TEST_SAMPLE_14 NA -TEST_PATIENT_15 TEST_SAMPLE_15 NA -TEST_PATIENT_NAMESPACE TEST_SAMPLE_SOMATIC_HOMOZYGOUS NA -TEST_PATIENT_NAMESPACE TEST_SAMPLE_SOMATIC_HETEROZYGOUS NA -TEST_PATIENT_NAMESPACE TEST_SAMPLE_SOMATIC_UNDEFINED NA diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_cna_discrete.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_cna_discrete.txt deleted file mode 100644 index 9068287db04..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_cna_discrete.txt +++ /dev/null @@ -1,9 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 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TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 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a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_cna_pd_annotations.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_cna_pd_annotations.txt deleted file mode 100644 index 3c91408382e..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_cna_pd_annotations.txt +++ /dev/null @@ -1,8 +0,0 @@ -SAMPLE_ID Entrez_Gene_Id cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -TCGA-A2-A04U-01 116983 Putative_Passenger Test passenger Class 2 Class annotation -TCGA-A2-A04U-01 375790 Putative_Driver Test driver Class 1 Class annotation -TCGA-A2-A04U-01 219293 Putative_Passenger Test passenger -TCGA-A2-A04U-01 2073 Putative_Driver Test driver -TCGA-A7-A26F-01 55210 Class 2 Class annotation -TCGA-A7-A26F-01 83858 Class 1 Class annotation -TCGA-A7-A26F-01 2073 Putative_Driver \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_mutations_extended.maf b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_mutations_extended.maf deleted file mode 100644 index 1aacfd5dc88..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/data_mutations_extended.maf +++ /dev/null @@ -1,3 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation Zygosity.name Zygosity.code -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - Putative_Driver Test driver diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_cna_discrete.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_cna_discrete.txt deleted file mode 100644 index f6ea8bea46c..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_cna_discrete.txt +++ /dev/null @@ -1,10 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -stable_id: gistic -show_profile_in_analysis_tab: true -profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC -data_filename: data_cna_discrete.txt -pd_annotations_filename: data_cna_pd_annotations.txt -namespaces: CustomNamespace diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_mutations_extended.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_mutations_extended.txt deleted file mode 100644 index 94df92aa5d9..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_mutations_extended.txt +++ /dev/null @@ -1,10 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations -data_filename: data_mutations_extended.maf -swissprot_identifier: name -namespaces: Zygosity diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_study.txt b/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_study.txt deleted file mode 100644 index 915ad2ca0bf..00000000000 --- a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_study.txt +++ /dev/null @@ -1,9 +0,0 @@ -type_of_cancer: brca-es0 -cancer_study_identifier: study_es_0 -name: Test study es_0 -description: Test study es_0 -citation: Cell 2018 -pmid: 29625048,29596782,29622463,29617662,29625055,29625050 -groups: PUBLIC;GDAC;SU2C-PI3K -add_global_case_list: true -reference_genome: hg19 diff --git a/core/src/test/scripts/test_data/study_es_1/cancer_type.txt b/core/src/test/scripts/test_data/study_es_1/cancer_type.txt deleted file mode 100644 index 9263471fe03..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/cancer_type.txt +++ /dev/null @@ -1 +0,0 @@ -brca-ben Breast Invasive Carcinoma breast,breast invasive HotPink Breast diff --git a/core/src/test/scripts/test_data/study_es_1/case_lists/cases_all.txt b/core/src/test/scripts/test_data/study_es_1/case_lists/cases_all.txt deleted file mode 100644 index 6157f734383..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/case_lists/cases_all.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_all -case_list_name: All Tumors -case_list_description: All tumor samples (825 samples) -case_list_ids: INVALID-A2-A0T2-01 TCGA-A2-A04P-01 TCGA-A1-A0SK-01 TCGA-A2-A0CM-01 TCGA-AR-A1AR-01 TCGA-B6-A0WX-01 TCGA-BH-A1F0-01 TCGA-B6-A0I6-01 TCGA-BH-A18V-01 TCGA-BH-A18Q-01 TCGA-BH-A18K-01 TCGA-BH-A0HL-01 TCGA-BH-A0E0-01 TCGA-BH-A0RX-01 TCGA-A7-A13D-01 TCGA-BH-A0E6-01 TCGA-AO-A0J4-01 TCGA-A7-A0CE-01 TCGA-A7-A13E-01 TCGA-A7-A0DA-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-AQ-A04J-01 TCGA-BH-A0HN-01 TCGA-A2-A0T0-01 TCGA-A2-A0YE-01 TCGA-A2-A0YJ-01 TCGA-A2-A0D0-01 TCGA-A2-A04U-01 TCGA-AO-A0J6-01 TCGA-A2-A0YM-01 TCGA-A2-A0D2-01 TCGA-BH-A0B3-01 TCGA-A2-A04Q-01 TCGA-A2-A0SX-01 TCGA-AO-A0JL-01 TCGA-AO-A12F-01 TCGA-BH-A0B9-01 TCGA-A2-A04T-01 TCGA-B6-A0RT-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A124-01 TCGA-B6-A0RU-01 TCGA-B6-A0IQ-01 TCGA-B6-A0I2-01 TCGA-B6-A0IJ-01 TCGA-B6-A0X1-01 TCGA-B6-A0RE-01 TCGA-A2-A0ST-01 TCGA-AR-A0TP-01 TCGA-A1-A0SO-01 TCGA-A8-A07C-01 TCGA-A8-A07O-01 TCGA-A8-A07R-01 TCGA-A8-A07U-01 TCGA-A8-A08H-01 TCGA-A8-A08R-01 TCGA-AN-A04D-01 TCGA-AN-A0AL-01 TCGA-AN-A0AR-01 TCGA-AN-A0AT-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FL-01 TCGA-AN-A0FX-01 TCGA-AN-A0G0-01 TCGA-AN-A0XU-01 TCGA-AR-A0TS-01 TCGA-AR-A0TU-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AY-01 TCGA-BH-A0AV-01 TCGA-BH-A0BG-01 TCGA-BH-A0BL-01 TCGA-BH-A0BW-01 TCGA-BH-A0DL-01 TCGA-BH-A0WA-01 TCGA-BH-A18G-01 TCGA-C8-A12K-01 TCGA-C8-A12V-01 TCGA-C8-A131-01 TCGA-C8-A134-01 TCGA-D8-A147-01 TCGA-E2-A14N-01 TCGA-E2-A14R-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A150-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B5-01 TCGA-A8-A08L-01 TCGA-BH-A1EV-01 TCGA-B6-A0I9-01 TCGA-A8-A09X-01 TCGA-B6-A0IK-01 TCGA-BH-A18P-01 TCGA-A8-A08J-01 TCGA-BH-A18R-01 TCGA-AR-A1AT-01 TCGA-B6-A0RS-01 TCGA-BH-A0DZ-01 TCGA-A2-A0T1-01 TCGA-AO-A0J2-01 TCGA-BH-A0AW-01 TCGA-BH-A0EE-01 TCGA-A2-A0D1-01 TCGA-AO-A03N-01 TCGA-A2-A0CY-01 TCGA-A2-A04X-01 TCGA-A2-A0CX-01 TCGA-A2-A04W-01 TCGA-AO-A12D-01 TCGA-A2-A0CL-01 TCGA-AO-A0JE-01 TCGA-A2-A0EQ-01 TCGA-AO-A03L-01 TCGA-B6-A0RH-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A07B-01 TCGA-A8-A07I-01 TCGA-A8-A081-01 TCGA-A8-A08B-01 TCGA-A8-A08X-01 TCGA-A8-A092-01 TCGA-A8-A094-01 TCGA-A8-A09G-01 TCGA-A8-A0A7-01 TCGA-AN-A04C-01 TCGA-AN-A0FV-01 TCGA-AR-A0TX-01 TCGA-BH-A0B7-01 TCGA-BH-A0HY-01 TCGA-C8-A12L-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HF-01 TCGA-D8-A13Z-01 TCGA-E2-A14P-01 TCGA-E2-A14V-01 TCGA-E2-A152-01 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TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A08S-01 TCGA-A8-A09E-01 TCGA-A8-A09K-01 TCGA-AC-A23C-01 TCGA-AC-A23E-01 TCGA-AC-A23H-01 TCGA-AO-A1KR-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-BH-A0B2-01 TCGA-BH-A0DV-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A28Q-01 TCGA-C8-A1HE-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A146-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IP-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LL-01 TCGA-E2-A1LS-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GM-A2DA-01 TCGA-GM-A2DB-01 TCGA-GM-A2DC-01 TCGA-GM-A2DD-01 TCGA-GM-A2DF-01 TCGA-GM-A2DH-01 TCGA-GM-A2DI-01 TCGA-GM-A2DK-01 TCGA-GM-A2DL-01 TCGA-GM-A2DM-01 TCGA-GM-A2DN-01 TCGA-GM-A2DO-01 TCGA-AR-A24W-01 TCGA-AC-A2B8-01 TCGA-AC-A2FF-01 TCGA-AC-A2FB-01 TCGA-AC-A2FG-01 TCGA-GI-A2C8-01 TCGA-E9-A295-01 diff --git a/core/src/test/scripts/test_data/study_es_1/data_expression_median.txt b/core/src/test/scripts/test_data/study_es_1/data_expression_median.txt deleted file mode 100644 index 15c7ba8bfc7..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/data_expression_median.txt +++ /dev/null @@ -1,7 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TEST2-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0CY-01 TCGA-A2-A0CZ-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07C-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09K-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0G0-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XP-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12C-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TU-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AT-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I6-01 TCGA-B6-A0I8-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IG-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B1-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B8-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 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identifier Subtype description Days to sample collection. -#STRING STRING STRING STRING -#1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE DAYS_TO_COLLECTION -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like 1 -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like 1 -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like spam -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like 1 -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like 1 -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like 1 -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA 1 -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like 1 -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like 1 -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like 1 -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA 1 -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like 1 -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like 1 -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like 1 -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like 1 -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like 1 -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like 1 -TCGA-A7-A13E TCGA-A7-A13E-01 NA 1 -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like 1 -TCGA-D8-A142 TCGA-D8-A142-01 basal-like 1 -TCGA-D8-A143 TCGA-D8-A143-01 NA 1 -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like 1 -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA 1 -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like 1 -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA 1 -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA 1 -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like 1 -TCGA-A2-A04U TCGA-A2-A04U-01 NA 1 -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like 1 -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like 1 -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like 1 -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like 1 -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like 1 -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like 1 -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like 1 -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like 1 -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like 1 -TCGA-A2-A04T TCGA-A2-A04T-01 NA 1 -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like 1 -TCGA-AO-A128 TCGA-AO-A128-01 NA 1 -TCGA-AO-A129 TCGA-AO-A129-01 basal-like 1 -TCGA-AO-A124 TCGA-AO-A124-01 basal-like 1 -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like 1 -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like 1 -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like 1 -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like 1 -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA 1 -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like 1 -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like 1 -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like 1 -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like 1 -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like 1 -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like 1 -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like 1 -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like 1 -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like 1 -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like 1 -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like 1 -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like 1 -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like 1 -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA 1 -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like 1 -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like 1 -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like 1 -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA 1 -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like 1 -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like 1 -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA 1 -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA 1 -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like 1 -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like 1 -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like 1 -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like 1 -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like 1 -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like 1 -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like 1 -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like 1 -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like 1 -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like 1 -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like 1 -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like 1 -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like 1 -TCGA-BH-A18G TCGA-BH-A18G-01 NA 1 -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like 1 -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like 1 -TCGA-C8-A131 TCGA-C8-A131-01 basal-like 1 -TCGA-C8-A134 TCGA-C8-A134-01 basal-like 1 -TCGA-D8-A147 TCGA-D8-A147-01 basal-like 1 -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like 1 -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like 1 -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like 1 -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like 1 -TCGA-E2-A150 TCGA-E2-A150-01 basal-like 1 -TCGA-E2-A158 TCGA-E2-A158-01 basal-like 1 -TCGA-E2-A159 TCGA-E2-A159-01 basal-like 1 -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA 1 -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like 1 -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched 1 -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched 1 -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched 1 -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched 1 -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched 1 -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched 1 -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched 1 -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched 1 -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched 1 -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched 1 -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched 1 -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched 1 -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched 1 -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched 1 -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched 1 -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched 1 -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched 1 -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched 1 -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched 1 -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched 1 -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched 1 -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched 1 -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched 1 -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched 1 -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched 1 -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched 1 -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched 1 -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched 1 -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched 1 -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched 1 -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched 1 -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched 1 -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched 1 -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched 1 -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched 1 -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched 1 -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched 1 -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched 1 -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched 1 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Luminal B 1 -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B 1 -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B 1 -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B 1 -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B 1 -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B 1 -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B 1 -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B 1 -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B 1 -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B 1 -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B 1 -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B 1 -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B 1 -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B 1 -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B 1 -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B 1 -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B 1 -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B 1 -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B 1 -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B 1 -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B 1 -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B 1 -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B 1 -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B 1 -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B 1 -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B 1 -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B 1 -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B 1 -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B 1 -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B 1 -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B 1 -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B 1 -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B 1 -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B 1 -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B 1 -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B 1 -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B 1 -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B 1 -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B 1 -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B 1 -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B 1 -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B 1 -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B 1 -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B 1 -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B 1 -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B 1 -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B 1 -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B 1 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TCGA-E2-A1IL-01 NA 1 -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA 1 -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA 1 -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA 1 -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA 1 -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA 1 -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA 1 -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA 1 -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA 1 -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA 1 -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA 1 -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA 1 -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA 1 -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA 1 -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA 1 -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA 1 -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA 1 -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA 1 -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA 1 -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA 1 -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA 1 -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA 1 -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA 1 -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA 1 -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA 1 -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA 1 -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA 1 -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA 1 -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA 1 -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA 1 -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA 1 -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA 1 -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA 1 -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA 1 -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA 1 -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA 1 -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA 1 -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA 1 -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA 1 -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA 1 -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA 1 -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA 1 -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA 1 -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA 1 -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA 1 -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA 1 -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA 1 -TCGA-E9-A226 TCGA-E9-A226-01 NA 1 -TCGA-E9-A227 TCGA-E9-A227-01 NA 1 -TCGA-E9-A228 TCGA-E9-A228-01 NA 1 -TCGA-E9-A229 TCGA-E9-A229-01 NA 1 -TCGA-E9-A22A TCGA-E9-A22A-01 NA 1 -TCGA-E9-A22B TCGA-E9-A22B-01 NA 1 -TCGA-E9-A22D TCGA-E9-A22D-01 NA 1 -TCGA-E9-A22E TCGA-E9-A22E-01 NA 1 -TCGA-E9-A22G TCGA-E9-A22G-01 NA 1 -TCGA-E9-A22H TCGA-E9-A22H-01 NA 1 -TCGA-E9-A243 TCGA-E9-A243-01 NA 1 -TCGA-E9-A244 TCGA-E9-A244-01 NA 1 -TCGA-E9-A245 TCGA-E9-A245-01 NA 1 -TCGA-E9-A247 TCGA-E9-A247-01 NA 1 -TCGA-E9-A248 TCGA-E9-A248-01 NA 1 -TCGA-E9-A249 TCGA-E9-A249-01 NA 1 -TCGA-E9-A24A TCGA-E9-A24A-01 NA 1 -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA 1 -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA 1 -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA 1 -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA 1 -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA 1 -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA 1 -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA 1 -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA 1 -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA 1 -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA 1 -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA 1 -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA 1 -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA 1 -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA 1 -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA 1 -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA 1 -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA 1 -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA 1 -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA 1 -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA 1 -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA 1 -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA 1 -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA 1 -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA 1 -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA 1 -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA 1 -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA 1 -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA 1 -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA 1 -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA 1 -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA 1 -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA 1 -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA 1 -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA 1 -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA 1 -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA 1 -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA 1 -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA 1 -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA 1 -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA 1 -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA 1 -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA 1 -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA 1 -TCGA-AR-A24W TCGA-AR-A24W-01 NA 1 -TCGA-AC-A2B8 TCGA-AC-A2B8-01 NA 1 -TCGA-AC-A2FF TCGA-AC-A2FF-01 NA 1 -TCGA-AC-A2FB TCGA-AC-A2FB-01 NA 1 -TCGA-AC-A2FG TCGA-AC-A2FG-01 NA 1 -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA 1 -TCGA-E9-A295 TCGA-E9-A295-01 NA 1 -TCGA-E2-A15E TCGA-E2-A15E-06 NA 1 -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA 1 diff --git a/core/src/test/scripts/test_data/study_es_1/data_treatment_ec50.txt b/core/src/test/scripts/test_data/study_es_1/data_treatment_ec50.txt deleted file mode 100644 index aa610a6d896..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/data_treatment_ec50.txt +++ /dev/null @@ -1,11 +0,0 @@ -ENTITY_STABLE_ID NAME DESCRIPTION URL TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -17 AAG Name of 17-AAG Desc of 17-AAG Url of 17-AAG NAN NaN nan 0.07082279 0.150094494 0.422571242 0.1517988 0.279530227 -AEW541 Name of AEW541 Desc of AEW541 Url of AEW541 >8 2.329924107 2 0 1.736181378 4.260821819 Infinite 7.613147736 -AZD0530 Name of AZD0530 Desc of AZD0530 Url of AZD0530 >8 >8 4.597949505 3.192236662 >8 Inf 1.071310043 infinite -AZD6244 Name of AZD6244 Desc of AZD6244 Url of AZD6244 >8 >8 >8 >8 >8 >8 >8 inf -Erlotinib Name of Erlotinib Desc of Erlotinib Url of Erlotinib >8 >8 >8 2.439512491 >8 4.232964516 2 >8 -Irinotecan Name of Irinotecan Desc of Irinotecan Url of Irinotecan 0.080764666 NA 0.06704437 0.069568723 0.034992039 0.740817904 0.209220141 -L-685458 Name of L-685458 Desc of L-685458 Url of L-685458 >8 >8 3.267752409 >8 >8 0 >8 >8 -Lapatinib Name of Lapatinib Desc of Lapatinib Url of Lapatinib >8 7.847305298 >8 2.30776763 >8 0.849476227 1.057461143 7.178035259 -LBW242 Name of LBW242 Desc of LBW242 Url of LBW242 >8 >8 >8 >8 >8 >8 >8 >8 -Nilotinib Name of Nilotinib Desc of Nilotinib Url of Nilotinib NA >8 NA 7.475354671 >8 1.910434365 >8 >8 diff --git a/core/src/test/scripts/test_data/study_es_1/data_treatment_ic50.txt b/core/src/test/scripts/test_data/study_es_1/data_treatment_ic50.txt deleted file mode 100644 index 5b271f61714..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/data_treatment_ic50.txt +++ /dev/null @@ -1,10 +0,0 @@ -ENTITY_STABLE_ID NAME DESCRIPTION URL TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -17-AAG Name of 17-AAG Desc of 17-AAG Url of 17-AAG NAN NaN nan 0.07082279 0.150094494 0.422571242 0.1517988 0.279530227 -AEW541 Name of AEW541 Desc of AEW541 Url of AEW541 >8 2.329924107 2 0 1.736181378 4.260821819 Infinite 7.613147736 -AZD0530 Name of AZD0530 Desc of AZD0530 Url of AZD0530 >8 >8 4.597949505 3.192236662 >8 Inf 1.071310043 infinite -AZD6244 Name of AZD6244 Desc of AZD6244 Url of AZD6244 >8 >8 >8 >8 >8 >8 >8 inf -Erlotinib Name of Erlotinib Desc of Erlotinib Url of Erlotinib >8 >8 >8 2.439512491 >8 4.232964516 2 >8 -Irinotecan Name of Irinotecan Desc of Irinotecan Url of Irinotecan 0.080764666 NA 0.06704437 0.069568723 0.034992039 0.740817904 0.209220141 -L-685458 Name of L-685458 Desc of L-685458 Url of L-685458 >8 >8 3.267752409 >8 >8 0 >8 >8 -Lapatinib Name of Lapatinib Desc of Lapatinib Url of Lapatinib >8 7.847305298 >8 2.30776763 >8 0.849476227 1.057461143 7.178035259 -LBW242 Name of LBW242 Desc of LBW242 Url of LBW242 >~8 >8 >8 >8 >8 >8 >8 >8 diff --git a/core/src/test/scripts/test_data/study_es_1/meta_expression_median.txt b/core/src/test/scripts/test_data/study_es_1/meta_expression_median.txt deleted file mode 100644 index 9c2e8179492..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/meta_expression_median.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: MRNA_EXPRESSION -datatype: Z-SCORE -stable_id: mrna -profile_description: Expression levels (Agilent microarray). -show_profile_in_analysis_tab: false -profile_name: mRNA expression (microarray) -data_filename: data_expression_median.txt diff --git a/core/src/test/scripts/test_data/study_es_1/meta_samples.txt b/core/src/test/scripts/test_data/study_es_1/meta_samples.txt deleted file mode 100644 index 3209a7d27dd..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/meta_samples.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -show_profile_in_analysis_tab: false -profile_description: Sample clinical data for this study. -profile_name: Sample clinical data for brca_tcga_pub. -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_es_1/meta_study.txt b/core/src/test/scripts/test_data/study_es_1/meta_study.txt deleted file mode 100644 index c6a63249bbd..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/meta_study.txt +++ /dev/null @@ -1,7 +0,0 @@ -type_of_cancer: brca -cancer_study_identifier: brca_tcga_pub -name: Breast Invasive Carcinoma (TCGA, Nature 2012) -description: The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal. -citation: TCGA, Nature 2012 -pmid: 23000897 -groups: PUBLIC;GDAC;SU2C-PI3K diff --git a/core/src/test/scripts/test_data/study_es_1/meta_treatment_ec50.txt b/core/src/test/scripts/test_data/study_es_1/meta_treatment_ec50.txt deleted file mode 100644 index 018cbc0d0e1..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/meta_treatment_ec50.txt +++ /dev/null @@ -1,12 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: GENERIC_ASSAY -generic_assay_type: TREATMENT_RESPONSE -datatype: LIMIT-VALUE -stable_id: treatment_ec50 -profile_name: EC50 values of compounds on cellular phenotype readout -profile_description: EC50 (compound concentration resulting in half maximal activation) of compounds on cellular phenotype readout of cultured mutant cell lines. -data_filename: data_treatment_ec50.txt -show_profile_in_analysis_tab: true -pivot_threshold_value: 0.1 -value_sort_order: ASC -generic_entity_meta_properties: NAME,DESCRIPTION,URL \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_1/meta_treatment_ic50.txt b/core/src/test/scripts/test_data/study_es_1/meta_treatment_ic50.txt deleted file mode 100644 index 734b47e8c84..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/meta_treatment_ic50.txt +++ /dev/null @@ -1,12 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: GENERIC_ASSAY -generic_assay_type: TREATMENT_RESPONSE -datatype: LIMIT-VALUE -stable_id: treatment_ic50 -profile_name: IC50 values of compounds on cellular phenotype readout -profile_description: IC50 (compound concentration resulting in half maximal inhibition) of compounds on cellular phenotype readout of cultured mutant cell lines. -data_filename: data_treatment_ic50.txt -show_profile_in_analysis_tab: true -pivot_threshold_value: 0.1 -value_sort_order: ASC -generic_entity_meta_properties: NAME,DESCRIPTION,URL \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_1/report.html b/core/src/test/scripts/test_data/study_es_1/report.html deleted file mode 100644 index 15fa9285ad5..00000000000 --- a/core/src/test/scripts/test_data/study_es_1/report.html +++ /dev/null @@ -1,346 +0,0 @@ - - - - - - - - - - - - - cBioPortal validation report: study in '../../../test/scripts/test_data/study_es_1/' - - - -
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    Requesting genes from portal at 'http://localhost:8080'
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    cBioPortal validation report

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    Study directory:
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    ErrorError: cBioPortal will not know how to load this, please revise or remove
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    Error––Treatment feature columns (`entity_stable_id`, ...) in treatment profile data files are not identical.The same set of treatments should be used across the different treatment data files for this study. Please ensure that all treatment id's of one file are present in all other treatment files.
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    - - diff --git a/core/src/test/scripts/test_data/study_es_3/cancer_type.txt b/core/src/test/scripts/test_data/study_es_3/cancer_type.txt deleted file mode 100644 index 9263471fe03..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/cancer_type.txt +++ /dev/null @@ -1 +0,0 @@ -brca-ben Breast Invasive Carcinoma breast,breast invasive HotPink Breast diff --git a/core/src/test/scripts/test_data/study_es_3/case_lists/cases_all.txt b/core/src/test/scripts/test_data/study_es_3/case_lists/cases_all.txt deleted file mode 100644 index 3f5a91cf49a..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/case_lists/cases_all.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_all -case_list_name: All Tumors -case_list_description: All tumor samples (825 samples) -case_list_ids: TCGA-A2-A0T2-01 TCGA-A2-A04P-01 TCGA-A1-A0SK-01 TCGA-A2-A0CM-01 TCGA-AR-A1AR-01 TCGA-B6-A0WX-01 TCGA-BH-A1F0-01 TCGA-B6-A0I6-01 TCGA-BH-A18V-01 TCGA-BH-A18Q-01 TCGA-BH-A18K-01 TCGA-BH-A0HL-01 TCGA-BH-A0E0-01 TCGA-BH-A0RX-01 TCGA-A7-A13D-01 TCGA-BH-A0E6-01 TCGA-AO-A0J4-01 TCGA-A7-A0CE-01 TCGA-A7-A13E-01 TCGA-A7-A0DA-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-AQ-A04J-01 TCGA-BH-A0HN-01 TCGA-A2-A0T0-01 TCGA-A2-A0YE-01 TCGA-A2-A0YJ-01 TCGA-A2-A0D0-01 TCGA-A2-A04U-01 TCGA-AO-A0J6-01 TCGA-A2-A0YM-01 TCGA-A2-A0D2-01 TCGA-BH-A0B3-01 TCGA-A2-A04Q-01 TCGA-A2-A0SX-01 TCGA-AO-A0JL-01 TCGA-AO-A12F-01 TCGA-BH-A0B9-01 TCGA-A2-A04T-01 TCGA-B6-A0RT-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A124-01 TCGA-B6-A0RU-01 TCGA-B6-A0IQ-01 TCGA-B6-A0I2-01 TCGA-B6-A0IJ-01 TCGA-B6-A0X1-01 TCGA-B6-A0RE-01 TCGA-A2-A0ST-01 TCGA-AR-A0TP-01 TCGA-A1-A0SO-01 TCGA-A8-A07C-01 TCGA-A8-A07O-01 TCGA-A8-A07R-01 TCGA-A8-A07U-01 TCGA-A8-A08H-01 TCGA-A8-A08R-01 TCGA-AN-A04D-01 TCGA-AN-A0AL-01 TCGA-AN-A0AR-01 TCGA-AN-A0AT-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FL-01 TCGA-AN-A0FX-01 TCGA-AN-A0G0-01 TCGA-AN-A0XU-01 TCGA-AR-A0TS-01 TCGA-AR-A0TU-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AY-01 TCGA-BH-A0AV-01 TCGA-BH-A0BG-01 TCGA-BH-A0BL-01 TCGA-BH-A0BW-01 TCGA-BH-A0DL-01 TCGA-BH-A0WA-01 TCGA-BH-A18G-01 TCGA-C8-A12K-01 TCGA-C8-A12V-01 TCGA-C8-A131-01 TCGA-C8-A134-01 TCGA-D8-A147-01 TCGA-E2-A14N-01 TCGA-E2-A14R-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A150-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B5-01 TCGA-A8-A08L-01 TCGA-BH-A1EV-01 TCGA-B6-A0I9-01 TCGA-A8-A09X-01 TCGA-B6-A0IK-01 TCGA-BH-A18P-01 TCGA-A8-A08J-01 TCGA-BH-A18R-01 TCGA-AR-A1AT-01 TCGA-B6-A0RS-01 TCGA-BH-A0DZ-01 TCGA-A2-A0T1-01 TCGA-AO-A0J2-01 TCGA-BH-A0AW-01 TCGA-BH-A0EE-01 TCGA-A2-A0D1-01 TCGA-AO-A03N-01 TCGA-A2-A0CY-01 TCGA-A2-A04X-01 TCGA-A2-A0CX-01 TCGA-A2-A04W-01 TCGA-AO-A12D-01 TCGA-A2-A0CL-01 TCGA-AO-A0JE-01 TCGA-A2-A0EQ-01 TCGA-AO-A03L-01 TCGA-B6-A0RH-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A07B-01 TCGA-A8-A07I-01 TCGA-A8-A081-01 TCGA-A8-A08B-01 TCGA-A8-A08X-01 TCGA-A8-A092-01 TCGA-A8-A094-01 TCGA-A8-A09G-01 TCGA-A8-A0A7-01 TCGA-AN-A04C-01 TCGA-AN-A0FV-01 TCGA-AR-A0TX-01 TCGA-BH-A0B7-01 TCGA-BH-A0HY-01 TCGA-C8-A12L-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HF-01 TCGA-D8-A13Z-01 TCGA-E2-A14P-01 TCGA-E2-A14V-01 TCGA-E2-A152-01 TCGA-E2-A1B0-01 TCGA-A2-A0CU-01 TCGA-AR-A0TR-01 TCGA-BH-A18T-01 TCGA-B6-A0I8-01 TCGA-B6-A0X4-01 TCGA-A8-A06U-01 TCGA-BH-A0EA-01 TCGA-BH-A18N-01 TCGA-BH-A1EU-01 TCGA-B6-A0X7-01 TCGA-A2-A04V-01 TCGA-BH-A18S-01 TCGA-BH-A18M-01 TCGA-B6-A0RM-01 TCGA-BH-A1ET-01 TCGA-B6-A0IN-01 TCGA-BH-A1EO-01 TCGA-B6-A0WS-01 TCGA-B6-A0RP-01 TCGA-B6-A0IH-01 TCGA-B6-A0WY-01 TCGA-BH-A1ES-01 TCGA-B6-A0X0-01 TCGA-B6-A0RQ-01 TCGA-B6-A0IG-01 TCGA-BH-A0HO-01 TCGA-BH-A0DS-01 TCGA-BH-A0DQ-01 TCGA-BH-A0HK-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0DB-01 TCGA-A7-A0D9-01 TCGA-AO-A0J8-01 TCGA-BH-A0GZ-01 TCGA-AO-A0JA-01 TCGA-AO-A0JF-01 TCGA-A7-A0CD-01 TCGA-D8-A145-01 TCGA-BH-A0HP-01 TCGA-BH-A0DK-01 TCGA-BH-A0E2-01 TCGA-A2-A0YI-01 TCGA-A2-A0YL-01 TCGA-AO-A0JG-01 TCGA-A2-A0YF-01 TCGA-BH-A0DP-01 TCGA-BH-A0E1-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-BH-A0HI-01 TCGA-A2-A0T7-01 TCGA-BH-A0BJ-01 TCGA-BH-A0H7-01 TCGA-BH-A0HF-01 TCGA-BH-A0EB-01 TCGA-BH-A0H6-01 TCGA-A2-A0YD-01 TCGA-BH-A0HB-01 TCGA-BH-A0HX-01 TCGA-AO-A12H-01 TCGA-E2-A10E-01 TCGA-A2-A0D3-01 TCGA-E2-A10F-01 TCGA-AO-A03V-01 TCGA-A2-A0EW-01 TCGA-BH-A0GY-01 TCGA-A2-A0EV-01 TCGA-BH-A0BC-01 TCGA-A2-A0YC-01 TCGA-A2-A0EU-01 TCGA-A2-A0ET-01 TCGA-A2-A04Y-01 TCGA-BH-A0HQ-01 TCGA-A2-A0ES-01 TCGA-BH-A0BA-01 TCGA-E2-A10B-01 TCGA-BH-A0B1-01 TCGA-BH-A0DH-01 TCGA-BH-A0B4-01 TCGA-BH-A0H9-01 TCGA-AO-A0J9-01 TCGA-AO-A12G-01 TCGA-A2-A0SY-01 TCGA-BH-A0E7-01 TCGA-AO-A03M-01 TCGA-BH-A0BV-01 TCGA-BH-A0B8-01 TCGA-A2-A0CZ-01 TCGA-A2-A0SU-01 TCGA-AO-A12E-01 TCGA-E2-A106-01 TCGA-A2-A0CV-01 TCGA-AO-A12C-01 TCGA-B6-A0RG-01 TCGA-A2-A0CS-01 TCGA-A2-A0EO-01 TCGA-A2-A0CQ-01 TCGA-A2-A0EN-01 TCGA-AO-A12A-01 TCGA-A2-A0CP-01 TCGA-AO-A126-01 TCGA-AO-A125-01 TCGA-A2-A0EM-01 TCGA-A2-A04N-01 TCGA-AQ-A04L-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0WZ-01 TCGA-B6-A0I5-01 TCGA-B6-A0RV-01 TCGA-B6-A0RO-01 TCGA-B6-A0RN-01 TCGA-B6-A0WT-01 TCGA-B6-A0IA-01 TCGA-B6-A0RI-01 TCGA-A1-A0SE-01 TCGA-A2-A0EX-01 TCGA-AO-A0JJ-01 TCGA-E2-A105-01 TCGA-A1-A0SD-01 TCGA-A1-A0SH-01 TCGA-A1-A0SJ-01 TCGA-A8-A06P-01 TCGA-A8-A06T-01 TCGA-A8-A06Y-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07J-01 TCGA-A8-A07P-01 TCGA-A8-A083-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08C-01 TCGA-A8-A08O-01 TCGA-A8-A08T-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A093-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0AD-01 TCGA-AN-A03X-01 TCGA-AN-A046-01 TCGA-AN-A04A-01 TCGA-AN-A0FD-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FW-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XP-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XV-01 TCGA-AR-A0TW-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AP-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0C1-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DI-01 TCGA-BH-A0DO-01 TCGA-BH-A0DT-01 TCGA-BH-A0DX-01 TCGA-BH-A0E9-01 TCGA-BH-A0EI-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0HA-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-C8-A12N-01 TCGA-C8-A12O-01 TCGA-C8-A12Y-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A1HI-01 TCGA-D8-A141-01 TCGA-E2-A14Q-01 TCGA-E2-A14T-01 TCGA-E2-A14Z-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A156-01 TCGA-E2-A15C-01 TCGA-E2-A15D-01 TCGA-E2-A15E-01 TCGA-E2-A15F-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-A2-A0SV-01 TCGA-AO-A03O-01 TCGA-A2-A0SW-01 TCGA-B6-A0WW-01 TCGA-BH-A18J-01 TCGA-BH-A18L-01 TCGA-A8-A06X-01 TCGA-B6-A0IC-01 TCGA-BH-A18U-01 TCGA-BH-A1EW-01 TCGA-AR-A0TY-01 TCGA-B6-A0X5-01 TCGA-B6-A0WV-01 TCGA-B6-A0RL-01 TCGA-AR-A0U2-01 TCGA-B6-A0IB-01 TCGA-AO-A0J7-01 TCGA-AO-A0J3-01 TCGA-D8-A13Y-01 TCGA-A7-A13F-01 TCGA-BH-A0HU-01 TCGA-D8-A140-01 TCGA-A7-A0CJ-01 TCGA-AQ-A04H-01 TCGA-BH-A0H0-01 TCGA-BH-A0BD-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0YH-01 TCGA-A2-A0YG-01 TCGA-A2-A0EY-01 TCGA-A2-A0D4-01 TCGA-BH-A0AY-01 TCGA-E2-A107-01 TCGA-AO-A0JI-01 TCGA-E2-A10C-01 TCGA-E2-A10A-01 TCGA-BH-A0C0-01 TCGA-E2-A109-01 TCGA-AO-A0JC-01 TCGA-BH-A0HW-01 TCGA-AO-A0JD-01 TCGA-AO-A0JM-01 TCGA-A2-A0CW-01 TCGA-A2-A0ER-01 TCGA-A2-A0CT-01 TCGA-AO-A12B-01 TCGA-A2-A04R-01 TCGA-B6-A0IM-01 TCGA-AO-A03P-01 TCGA-A1-A0SM-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06Z-01 TCGA-A8-A079-01 TCGA-A8-A07L-01 TCGA-A8-A07S-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A082-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08I-01 TCGA-A8-A08P-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09W-01 TCGA-A8-A09Z-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A049-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AM-01 TCGA-AN-A0AS-01 TCGA-AN-A0FF-01 TCGA-AN-A0FK-01 TCGA-AN-A0FY-01 TCGA-AN-A0XR-01 TCGA-AN-A0XW-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U3-01 TCGA-AR-A1AV-01 TCGA-BH-A0AU-01 TCGA-BH-A0B5-01 TCGA-BH-A0BF-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0W3-01 TCGA-BH-A18F-01 TCGA-C8-A12M-01 TCGA-C8-A12U-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A1HG-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-E2-A14O-01 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TCGA-B6-A1KN-01 TCGA-D8-A1XO-01 TCGA-D8-A1XT-01 TCGA-A1-A0SP-01 TCGA-D8-A1J8-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1XS-01 TCGA-A1-A0SB-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SI-01 TCGA-A1-A0SN-01 TCGA-A1-A0SQ-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A08S-01 TCGA-A8-A09E-01 TCGA-A8-A09K-01 TCGA-AC-A23C-01 TCGA-AC-A23E-01 TCGA-AC-A23H-01 TCGA-AO-A1KR-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-BH-A0B2-01 TCGA-BH-A0DV-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A28Q-01 TCGA-C8-A1HE-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A146-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IP-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LL-01 TCGA-E2-A1LS-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GM-A2DA-01 TCGA-GM-A2DB-01 TCGA-GM-A2DC-01 TCGA-GM-A2DD-01 TCGA-GM-A2DF-01 TCGA-GM-A2DH-01 TCGA-GM-A2DI-01 TCGA-GM-A2DK-01 TCGA-GM-A2DL-01 TCGA-GM-A2DM-01 TCGA-GM-A2DN-01 TCGA-GM-A2DO-01 TCGA-AR-A24W-01 TCGA-AC-A2B8-01 TCGA-AC-A2FF-01 TCGA-AC-A2FB-01 TCGA-AC-A2FG-01 TCGA-GI-A2C8-01 TCGA-E9-A295-01 diff --git a/core/src/test/scripts/test_data/study_es_3/data_gistic_genes_amp.txt b/core/src/test/scripts/test_data/study_es_3/data_gistic_genes_amp.txt deleted file mode 100644 index 4fed7d78499..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/data_gistic_genes_amp.txt +++ /dev/null @@ -1,5 +0,0 @@ -index chromosome region_start region_end peak_start peak_end enlarged_peak_start enlarged_peak_end n_genes_in_region genes_in_region n_genes_in_peak genes_in_peak n_genes_on_chip genes_on_chip top 3 amp cytoband q_value -8 6 105104338 108701250 107215848 107241341 107206929 107289865 1 NA 1 NA 1 6q21 8.7327e-14 -25 17 20903776 20926325 20909644 20914635 20804010 21012523 1 NA, 1 NA, 1 17p11.2 0.14805 -6 4 73398680 75049763 73931526 73935908 73825386 74269277 6 SNORA3,RNU6ATAC5P,RNU4ATAC9P,ANKRD17,COX18, 2 ANKRD17,COX18, 1 4q13.3 0.0030828 -21 14 37583259 38414817 38049107 38056423 37950983 38203446 4 SNORA42,TTC6,FOXA1,MIPOL1, 1 FOXA1, 1 14q21.1 0.001442 diff --git a/core/src/test/scripts/test_data/study_es_3/data_samples.txt b/core/src/test/scripts/test_data/study_es_3/data_samples.txt deleted file mode 100644 index ecc4aacc043..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/data_samples.txt +++ /dev/null @@ -1,831 +0,0 @@ -#Patient Identifier Sample Identifier Subtype Days to Sample Collection. -#Patient identifier Sample identifier Subtype description Days to sample collection. -#STRING STRING STRING STRING -#1 1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE DAYS_TO_COLLECTION -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like 1 -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like 1 -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like 1 -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like 1 -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like 1 -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like 1 -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA 1 -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like 1 -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like 1 -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like 1 -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA 1 -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like 1 -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like 1 -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like 1 -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like 1 -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like 1 -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like 1 -TCGA-A7-A13E TCGA-A7-A13E-01 NA 1 -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like 1 -TCGA-D8-A142 TCGA-D8-A142-01 basal-like 1 -TCGA-D8-A143 TCGA-D8-A143-01 NA 1 -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like 1 -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA 1 -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like 1 -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA 1 -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA 1 -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like 1 -TCGA-A2-A04U TCGA-A2-A04U-01 NA 1 -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like 1 -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like 1 -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like 1 -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like 1 -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like 1 -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like 1 -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like 1 -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like 1 -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like 1 -TCGA-A2-A04T TCGA-A2-A04T-01 NA 1 -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like 1 -TCGA-AO-A128 TCGA-AO-A128-01 NA 1 -TCGA-AO-A129 TCGA-AO-A129-01 basal-like 1 -TCGA-AO-A124 TCGA-AO-A124-01 basal-like 1 -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like 1 -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like 1 -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like 1 -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like 1 -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA 1 -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like 1 -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like 1 -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like 1 -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like 1 -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like 1 -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like 1 -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like 1 -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like 1 -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like 1 -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like 1 -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like 1 -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like 1 -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like 1 -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA 1 -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like 1 -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like 1 -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like 1 -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA 1 -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like 1 -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like 1 -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA 1 -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA 1 -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like 1 -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like 1 -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like 1 -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like 1 -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like 1 -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like 1 -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like 1 -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like 1 -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like 1 -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like 1 -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like 1 -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like 1 -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like 1 -TCGA-BH-A18G TCGA-BH-A18G-01 NA 1 -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like 1 -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like 1 -TCGA-C8-A131 TCGA-C8-A131-01 basal-like 1 -TCGA-C8-A134 TCGA-C8-A134-01 basal-like 1 -TCGA-D8-A147 TCGA-D8-A147-01 basal-like 1 -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like 1 -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like 1 -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like 1 -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like 1 -TCGA-E2-A150 TCGA-E2-A150-01 basal-like 1 -TCGA-E2-A158 TCGA-E2-A158-01 basal-like 1 -TCGA-E2-A159 TCGA-E2-A159-01 basal-like 1 -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA 1 -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like 1 -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched 1 -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched 1 -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched 1 -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched 1 -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched 1 -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched 1 -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched 1 -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched 1 -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched 1 -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched 1 -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched 1 -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched 1 -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched 1 -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched 1 -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched 1 -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched 1 -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched 1 -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched 1 -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched 1 -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched 1 -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched 1 -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched 1 -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched 1 -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched 1 -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched 1 -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched 1 -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched 1 -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched 1 -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched 1 -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched 1 -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched 1 -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched 1 -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched 1 -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched 1 -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched 1 -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched 1 -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched 1 -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched 1 -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched 1 -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched 1 -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched 1 -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched 1 -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched 1 -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched 1 -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched 1 -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched 1 -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched 1 -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched 1 -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched 1 -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched 1 -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched 1 -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched 1 -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched 1 -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched 1 -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched 1 -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched 1 -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched 1 -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched 1 -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A 1 -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A 1 -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A 1 -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A 1 -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A 1 -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A 1 -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A 1 -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A 1 -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A 1 -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A 1 -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A 1 -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A 1 -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A 1 -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A 1 -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A 1 -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A 1 -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A 1 -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A 1 -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A 1 -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A 1 -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A 1 -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A 1 -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A 1 -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A 1 -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A 1 -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A 1 -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A 1 -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A 1 -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A 1 -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A 1 -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A 1 -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A 1 -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A 1 -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A 1 -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A 1 -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A 1 -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A 1 -TCGA-A7-A0CD TCGA-A7-A0CD-01 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Luminal B 1 -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B 1 -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B 1 -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B 1 -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B 1 -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B 1 -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B 1 -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B 1 -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B 1 -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B 1 -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B 1 -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B 1 -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B 1 -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B 1 -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B 1 -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B 1 -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B 1 -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B 1 -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B 1 -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B 1 -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B 1 -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B 1 -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B 1 -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B 1 -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B 1 -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B 1 -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B 1 -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B 1 -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B 1 -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B 1 -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B 1 -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B 1 -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B 1 -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B 1 -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B 1 -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B 1 -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B 1 -TCGA-AO-A03U TCGA-AO-A03U-01 NA 1 -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA 1 -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA 1 -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low 1 -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA 1 -TCGA-AO-A03R TCGA-AO-A03R-01 NA 1 -TCGA-AO-A03T TCGA-AO-A03T-01 NA 1 -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low 1 -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B 1 -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA 1 -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA 1 -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA 1 -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA 1 -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA 1 -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA 1 -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA 1 -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA 1 -TCGA-BH-A203 TCGA-BH-A203-01 NA 1 -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA 1 -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA 1 -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA 1 -TCGA-BH-A208 TCGA-BH-A208-01 NA 1 -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA 1 -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA 1 -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA 1 -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA 1 -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA 1 -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA 1 -TCGA-BH-A204 TCGA-BH-A204-01 NA 1 -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA 1 -TCGA-AR-A256 TCGA-AR-A256-01 NA 1 -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA 1 -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA 1 -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA 1 -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA 1 -TCGA-BH-A209 TCGA-BH-A209-01 NA 1 -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA 1 -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA 1 -TCGA-A7-A13G TCGA-A7-A13G-01 NA 1 -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA 1 -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A 1 -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA 1 -TCGA-A7-A26E TCGA-A7-A26E-01 NA 1 -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA 1 -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA 1 -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA 1 -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA 1 -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A 1 -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA 1 -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA 1 -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA 1 -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA 1 -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA 1 -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA 1 -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA 1 -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA 1 -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA 1 -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA 1 -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA 1 -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA 1 -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA 1 -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA 1 -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA 1 -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA 1 -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA 1 -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA 1 -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA 1 -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA 1 -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA 1 -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA 1 -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA 1 -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA 1 -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA 1 -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA 1 -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA 1 -TCGA-A2-A259 TCGA-A2-A259-01 NA 1 -TCGA-A2-A25A TCGA-A2-A25A-01 NA 1 -TCGA-A2-A25B TCGA-A2-A25B-01 NA 1 -TCGA-A2-A25C TCGA-A2-A25C-01 NA 1 -TCGA-A2-A25D TCGA-A2-A25D-01 NA 1 -TCGA-A2-A25E TCGA-A2-A25E-01 NA 1 -TCGA-A2-A25F TCGA-A2-A25F-01 NA 1 -TCGA-A7-A26F TCGA-A7-A26F-01 NA 1 -TCGA-A7-A26G TCGA-A7-A26G-01 NA 1 -TCGA-A7-A26H TCGA-A7-A26H-01 NA 1 -TCGA-A7-A26I TCGA-A7-A26I-01 NA 1 -TCGA-A7-A26J TCGA-A7-A26J-01 NA 1 -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B 1 -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B 1 -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B 1 -TCGA-AC-A23C TCGA-AC-A23C-01 NA 1 -TCGA-AC-A23E TCGA-AC-A23E-01 NA 1 -TCGA-AC-A23H TCGA-AC-A23H-01 NA 1 -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA 1 -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA 1 -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA 1 -TCGA-AR-A24H TCGA-AR-A24H-01 NA 1 -TCGA-AR-A24K TCGA-AR-A24K-01 NA 1 -TCGA-AR-A24L TCGA-AR-A24L-01 NA 1 -TCGA-AR-A24M TCGA-AR-A24M-01 NA 1 -TCGA-AR-A24N TCGA-AR-A24N-01 NA 1 -TCGA-AR-A24O TCGA-AR-A24O-01 NA 1 -TCGA-AR-A24P TCGA-AR-A24P-01 NA 1 -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA 1 -TCGA-AR-A24R TCGA-AR-A24R-01 NA 1 -TCGA-AR-A24S TCGA-AR-A24S-01 NA 1 -TCGA-AR-A24T TCGA-AR-A24T-01 NA 1 -TCGA-AR-A24U TCGA-AR-A24U-01 NA 1 -TCGA-AR-A24V TCGA-AR-A24V-01 NA 1 -TCGA-AR-A24X TCGA-AR-A24X-01 NA 1 -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA 1 -TCGA-AR-A250 TCGA-AR-A250-01 NA 1 -TCGA-AR-A251 TCGA-AR-A251-01 NA 1 -TCGA-AR-A252 TCGA-AR-A252-01 NA 1 -TCGA-AR-A254 TCGA-AR-A254-01 NA 1 -TCGA-AR-A255 TCGA-AR-A255-01 NA 1 -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A 1 -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA 1 -TCGA-BH-A201 TCGA-BH-A201-01 NA 1 -TCGA-BH-A202 TCGA-BH-A202-01 NA 1 -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA 1 -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA 1 -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA 1 -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA 1 -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA 1 -TCGA-C8-A26V TCGA-C8-A26V-01 NA 1 -TCGA-C8-A26W TCGA-C8-A26W-01 NA 1 -TCGA-C8-A26X TCGA-C8-A26X-01 NA 1 -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA 1 -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA 1 -TCGA-C8-A273 TCGA-C8-A273-01 NA 1 -TCGA-C8-A274 TCGA-C8-A274-01 NA 1 -TCGA-C8-A275 TCGA-C8-A275-01 NA 1 -TCGA-C8-A278 TCGA-C8-A278-01 NA 1 -TCGA-C8-A27A TCGA-C8-A27A-01 NA 1 -TCGA-C8-A27B TCGA-C8-A27B-01 NA 1 -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A 1 -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA 1 -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA 1 -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA 1 -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA 1 -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA 1 -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA 1 -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA 1 -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA 1 -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA 1 -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA 1 -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA 1 -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA 1 -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA 1 -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA 1 -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA 1 -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA 1 -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA 1 -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA 1 -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA 1 -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA 1 -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA 1 -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA 1 -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA 1 -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA 1 -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA 1 -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA 1 -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA 1 -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA 1 -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA 1 -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA 1 -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA 1 -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA 1 -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA 1 -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA 1 -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA 1 -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA 1 -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA 1 -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA 1 -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA 1 -TCGA-D8-A27E TCGA-D8-A27E-01 NA 1 -TCGA-D8-A27F TCGA-D8-A27F-01 NA 1 -TCGA-D8-A27G TCGA-D8-A27G-01 NA 1 -TCGA-D8-A27H TCGA-D8-A27H-01 NA 1 -TCGA-D8-A27I TCGA-D8-A27I-01 NA 1 -TCGA-D8-A27K TCGA-D8-A27K-01 NA 1 -TCGA-D8-A27L TCGA-D8-A27L-01 NA 1 -TCGA-D8-A27M TCGA-D8-A27M-01 NA 1 -TCGA-D8-A27N TCGA-D8-A27N-01 NA 1 -TCGA-D8-A27P TCGA-D8-A27P-01 NA 1 -TCGA-D8-A27R TCGA-D8-A27R-01 NA 1 -TCGA-D8-A27T TCGA-D8-A27T-01 NA 1 -TCGA-D8-A27V TCGA-D8-A27V-01 NA 1 -TCGA-D8-A27W TCGA-D8-A27W-01 NA 1 -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA 1 -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA 1 -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA 1 -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA 1 -TCGA-E2-A1II TCGA-E2-A1II-01 NA 1 -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA 1 -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA 1 -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA 1 -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA 1 -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA 1 -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA 1 -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA 1 -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA 1 -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA 1 -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA 1 -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA 1 -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA 1 -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA 1 -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA 1 -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA 1 -TCGA-E2-A1LI 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>8 0.849476227 1.057461143 7.178035259 -LBW242 Name of LBW242 Desc of LBW242 Url of LBW242 >8 >8 >8 >8 >8 >8 >8 >8 -Nilotinib Name of Nilotinib Desc of Nilotinib Url of Nilotinib NA >8 NA 7.475354671 >8 1.910434365 >8 >8 diff --git a/core/src/test/scripts/test_data/study_es_3/data_treatment_ic50.txt b/core/src/test/scripts/test_data/study_es_3/data_treatment_ic50.txt deleted file mode 100644 index c9b832d3280..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/data_treatment_ic50.txt +++ /dev/null @@ -1,11 +0,0 @@ -ENTITY_STABLE_ID NAME DESCRIPTION URL TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 -17-AAG Name of 17-AAG Desc of 17-AAG Url of 17-AAG 0.22807844 0.329701692 0.053038094 0.07082279 0.150094494 0.422571242 0.1517988 0.279530227 -AEW541 Name of AEW541 Desc of AEW541 Url of AEW541 >8 2.329924107 2 5.002314091 1.736181378 4.260821819 >8 7.613147736 -AZD0530 Name of AZD0530 Desc of 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100644 index f548ab4791d..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/meta_gistic_genes_amp.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: GISTIC_GENES_AMP -datatype: Q-VALUE -reference_genome_id: hg19 -data_filename: data_gistic_genes_amp.txt diff --git a/core/src/test/scripts/test_data/study_es_3/meta_samples.txt b/core/src/test/scripts/test_data/study_es_3/meta_samples.txt deleted file mode 100644 index 3209a7d27dd..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/meta_samples.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -show_profile_in_analysis_tab: false -profile_description: Sample clinical data for this study. -profile_name: Sample clinical data for brca_tcga_pub. -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_es_3/meta_study.txt b/core/src/test/scripts/test_data/study_es_3/meta_study.txt deleted file mode 100644 index c6a63249bbd..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/meta_study.txt +++ /dev/null @@ -1,7 +0,0 @@ -type_of_cancer: brca -cancer_study_identifier: brca_tcga_pub -name: Breast Invasive Carcinoma (TCGA, Nature 2012) -description: The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal. -citation: TCGA, Nature 2012 -pmid: 23000897 -groups: PUBLIC;GDAC;SU2C-PI3K diff --git a/core/src/test/scripts/test_data/study_es_3/meta_treatment_ec50.txt b/core/src/test/scripts/test_data/study_es_3/meta_treatment_ec50.txt deleted file mode 100644 index 018cbc0d0e1..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/meta_treatment_ec50.txt +++ /dev/null @@ -1,12 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: GENERIC_ASSAY -generic_assay_type: TREATMENT_RESPONSE -datatype: LIMIT-VALUE -stable_id: treatment_ec50 -profile_name: EC50 values of compounds on cellular phenotype readout -profile_description: EC50 (compound concentration resulting in half maximal activation) of compounds on cellular phenotype readout of cultured mutant cell lines. -data_filename: data_treatment_ec50.txt -show_profile_in_analysis_tab: true -pivot_threshold_value: 0.1 -value_sort_order: ASC -generic_entity_meta_properties: NAME,DESCRIPTION,URL \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_3/meta_treatment_ic50.txt b/core/src/test/scripts/test_data/study_es_3/meta_treatment_ic50.txt deleted file mode 100644 index 734b47e8c84..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/meta_treatment_ic50.txt +++ /dev/null @@ -1,12 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: GENERIC_ASSAY -generic_assay_type: TREATMENT_RESPONSE -datatype: LIMIT-VALUE -stable_id: treatment_ic50 -profile_name: IC50 values of compounds on cellular phenotype readout -profile_description: IC50 (compound concentration resulting in half maximal inhibition) of compounds on cellular phenotype readout of cultured mutant cell lines. -data_filename: data_treatment_ic50.txt -show_profile_in_analysis_tab: true -pivot_threshold_value: 0.1 -value_sort_order: ASC -generic_entity_meta_properties: NAME,DESCRIPTION,URL \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_3/result_report.html b/core/src/test/scripts/test_data/study_es_3/result_report.html deleted file mode 100644 index b76f3fd4e46..00000000000 --- a/core/src/test/scripts/test_data/study_es_3/result_report.html +++ /dev/null @@ -1,511 +0,0 @@ - - - - - - - - - - - - - cBioPortal validation report: study in '/home/pnp300/git/cbioportal/core/src/test/scripts/test_data/study_es_3' - - - - - -
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    -
    - - \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_metastableid/cancer_type.txt b/core/src/test/scripts/test_data/study_metastableid/cancer_type.txt deleted file mode 100644 index 45afdad1b08..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/cancer_type.txt +++ /dev/null @@ -1 +0,0 @@ -brca Invasive Breast Carcinoma breast pink breast diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_CNA.txt b/core/src/test/scripts/test_data/study_metastableid/meta_CNA.txt deleted file mode 100644 index 039a9d91b6e..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_CNA.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -stable_id: gistic -show_profile_in_analysis_tab: true -profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC -data_filename: data_CNA.txt diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_CNA2.txt b/core/src/test/scripts/test_data/study_metastableid/meta_CNA2.txt deleted file mode 100644 index 039a9d91b6e..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_CNA2.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -stable_id: gistic -show_profile_in_analysis_tab: true -profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC -data_filename: data_CNA.txt diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_cancer_type.txt b/core/src/test/scripts/test_data/study_metastableid/meta_cancer_type.txt deleted file mode 100644 index d578a428970..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_cancer_type.txt +++ /dev/null @@ -1,3 +0,0 @@ -genetic_alteration_type: CANCER_TYPE -datatype: CANCER_TYPE -data_filename: cancer_type.txt diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_expression_median_correct.txt b/core/src/test/scripts/test_data/study_metastableid/meta_expression_median_correct.txt deleted file mode 100644 index 0e183047e1b..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_expression_median_correct.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: MRNA_EXPRESSION -datatype: CONTINUOUS -stable_id: mrna -profile_description: Expression levels (Agilent microarray). -show_profile_in_analysis_tab: false -profile_name: mRNA expression (microarray) -data_filename: data_expression_median.txt diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_expression_median_wrong.txt b/core/src/test/scripts/test_data/study_metastableid/meta_expression_median_wrong.txt deleted file mode 100644 index 377a05b54ae..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_expression_median_wrong.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: MRNA_EXPRESSION -datatype: CONTINUOUS -stable_id: mrna_test -profile_description: Expression levels (Agilent microarray). -show_profile_in_analysis_tab: false -profile_name: mRNA expression (microarray) -data_filename: data_expression_median.txt diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_profile_stableId_unallowedchars.txt b/core/src/test/scripts/test_data/study_metastableid/meta_profile_stableId_unallowedchars.txt deleted file mode 100644 index 2587aa5855d..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_profile_stableId_unallowedchars.txt +++ /dev/null @@ -1,12 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: GENERIC_ASSAY -generic_assay_type: TREATMENT_RESPONSE -datatype: LIMIT-VALUE -stable_id: treatment ic50 -profile_name: IC50 values of compounds on cellular phenotype readout -profile_description: IC50 (compound concentration resulting in half maximal inhibition) of compounds on cellular phenotype readout of cultured mutant cell lines. -data_filename: data_treatment_ic50.txt -show_profile_in_analysis_tab: true -pivot_threshold_value: 0.1 -value_sort_order: ASC -generic_entity_meta_properties: NAME,DESCRIPTION,URL \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_samples.txt b/core/src/test/scripts/test_data/study_metastableid/meta_samples.txt deleted file mode 100644 index 2f7c8fb76d7..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_samples.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -stable_id: clinical -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_metastableid/meta_study.txt b/core/src/test/scripts/test_data/study_metastableid/meta_study.txt deleted file mode 100644 index c6a63249bbd..00000000000 --- a/core/src/test/scripts/test_data/study_metastableid/meta_study.txt +++ /dev/null @@ -1,7 +0,0 @@ -type_of_cancer: brca -cancer_study_identifier: brca_tcga_pub -name: Breast Invasive Carcinoma (TCGA, Nature 2012) -description: The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal. -citation: TCGA, Nature 2012 -pmid: 23000897 -groups: PUBLIC;GDAC;SU2C-PI3K diff --git a/core/src/test/scripts/test_data/study_missing_caselists/brca_tcga_pub.maf b/core/src/test/scripts/test_data/study_missing_caselists/brca_tcga_pub.maf deleted file mode 100644 index f3421ffca90..00000000000 --- a/core/src/test/scripts/test_data/study_missing_caselists/brca_tcga_pub.maf +++ /dev/null @@ -1,33 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All cbp_driver cbp_driver_annotation cbp_driver_tiers cbp_driver_tiers_annotation -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - Putative_Driver Test driver -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1 HIGH 1 deletion 1 1 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0 7 3 30 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n 1 known frame_shift_del c.462 p.A155fs 83 - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - Putative_Passenger Test passenger Class 2 Class annotation -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - Putative_Driver Test driver Class 1 Class annotation -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - Unknown Class 4 Class annotation -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n 1 known silent c.249 p.R83 920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - Putative_Driver Test driver Class 4 Class annotation -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0 9 9 50 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - Putative_Passenger Test passenger Class 1 Class annotation -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0 30 36 54.55 - - - 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene - - - Putative_Driver Test driver Class 1 Class annotation -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; - ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1 deletion 2 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n 1 known frame_shift_del c.1506 p.L503fs 998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC ENSG00000113318 83 0 0 12 2 14.29 - - - 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n 1 known frame_shift_del c.1506 p.L503fs 998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC - - - Putative_Passenger Test passenger Class 3 Class annotation -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1 1,1 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n 1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 50 0 0 36 4 10 - - - 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n 1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC - - - Putative_Passenger Test passenger -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n 1 known missense c.1256 p.I419T 999 pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 20 0 0 10 4 28.57 - - - 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n 1 known missense c.1256 p.I419T 999 pfam_NPIP - no_errors NPIPL2 HGNC - - - Putative_Passenger Test passenger Class 1 Class annotation -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n 1 known missense c.289 p.V97M 963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC ENSG00000125879 57 0 0 36 9 20 - - - 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n 1 known missense c.289 p.V97M 963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC - - - Class 2 Class annotation -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n 1 known silent c.672 p.S224 92 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC ENSG00000078589 65 0 0 46 10 17.86 - - - X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n 1 known silent c.672 p.S224 92 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC - - - Putative_Driver Test driver Class 3 Class annotation -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1000 pfam_DUF3595 - no_errors PIEZO1 HGNC ENSG00000103335 37 0 0 20 8 28.57 - - - 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1000 pfam_DUF3595 - no_errors PIEZO1 HGNC - - - Putative_Passenger Test passenger Class 3 Class annotation -TP53 genome.wustl.edu GRCh37 17 7578253 7578253 0 Missense_Mutation SNP C C A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A C Unknown Germline Phase_IV Capture 1 dbGAP IlluminaGAIIx medium 3.005 getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G199V getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G199V getma.org/?cm=var&var=hg19,17,7578253,C,A&fts=all ENST00000269305.4:c.596G>T p.Gly199Val p.G199V ENST00000269305 11-Jun 0 0 TP53,missense_variant,p.Gly199Val,ENST00000420246,NM_001126114.2,NM_001276696.1;TP53,missense_variant,p.Gly199Val,ENST00000455263,NM_001276695.1,NM_001126113.2;TP53,missense_variant,p.Gly199Val,ENST00000269305,NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_001126118.1;TP53,missense_variant,p.Gly199Val,ENST00000445888,;TP53,missense_variant,p.Gly199Val,ENST00000359597,;TP53,missense_variant,p.Gly199Val,ENST00000413465,;TP53,missense_variant,p.Gly67Val,ENST00000509690,;TP53,missense_variant,p.Gly106Val,ENST00000514944,;TP53,downstream_gene_variant,,ENST00000508793,;TP53,downstream_gene_variant,,ENST00000604348,;TP53,downstream_gene_variant,,ENST00000503591,;TP53,upstream_gene_variant,,ENST00000576024,;TP53,intron_variant,,ENST00000574684,;TP53,non_coding_transcript_exon_variant,,ENST00000510385,;TP53,non_coding_transcript_exon_variant,,ENST00000504290,;TP53,non_coding_transcript_exon_variant,,ENST00000504937,;TP53,non_coding_transcript_exon_variant,,ENST00000505014,; A ENSG00000141510 ENST00000269305 Transcript missense_variant 786/2579 596/1182 199 G/V gGa/gTa TP53_g.12665G>T,COSM44140,COSM255788,COSM255787,COSM255789,COSM3675525,COSM3675524,COSM255790 1 TP53 HGNC 11998 protein_coding YES CCDS11118.1 ENSP00000269305 P53_HUMAN S5LQU8_HUMAN,Q761V2_HUMAN,Q6IT77_HUMAN,Q1HGV1_HUMAN,Q0PKT5_HUMAN,L0ES54_HUMAN,L0EQ05_HUMAN,K7PPA8_HUMAN,H2EHT1_HUMAN,G4Y083_HUMAN,E9PCY9_HUMAN,E7ESS1_HUMAN,E7EMR6_HUMAN,B5AKF6_HUMAN,B4DNI2_HUMAN,A4GWD0_HUMAN,A4GWB8_HUMAN,A4GWB5_HUMAN,A4GW97_HUMAN,A4GW76_HUMAN,A4GW75_HUMAN,A4GW74_HUMAN,A4GW67_HUMAN,A2I9Z1_HUMAN,A2I9Z0_HUMAN UPI000002ED67 NM_001126112.2 deleterious(0) probably_damaging(1) 11-Jun Gene3D:2.60.40.720,Pfam_domain:PF00870,hmmpanther:PTHR11447,hmmpanther:PTHR11447:SF6,Superfamily_domains:SSF49417 0,1,1,1,1,1,1,1 MODERATE 1 SNV 0,1,1,1,1,1,1,1 17 7578253 7578253 C A SNP TP53 NM_000546.4 human genbank 58_37c -1 reviewed missense c.596 p.G199V 1 HMMPfam_P53|7Csuperfamily_p53-like transcription factors HMMPfam_P53_TAD|7CHMMPfam_P53|7Csuperfamily_p53-like transcription factors|7CPatternScan_P53|7CHMMPfam_P53_tetramer|7Csuperfamily_p53 tetramerization domain - 17 7578253 7578253 C A SNP TP53 NM_000546.4 human genbank 58_37c -1 reviewed missense c.596 p.G199V 1 HMMPfam_P53|7Csuperfamily_p53-like transcription factors HMMPfam_P53_TAD|7CHMMPfam_P53|7Csuperfamily_p53-like transcription factors|7CPatternScan_P53|7CHMMPfam_P53_tetramer|7Csuperfamily_p53 tetramerization domain - -TP53 genome.wustl.edu GRCh37 17 7576851 7576851 0 Splice_Site SNP A A C novel unknown TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx ENST00000269305.4:c.993+2T>G p.X331_splice ENST00000269305 0 0 TP53,splice_donor_variant,,ENST00000420246,NM_001126114.2,NM_001276696.1;TP53,splice_donor_variant,,ENST00000455263,NM_001276695.1,NM_001126113.2;TP53,splice_donor_variant,,ENST00000269305,NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_001126118.1;TP53,splice_donor_variant,,ENST00000445888,;TP53,splice_donor_variant,,ENST00000359597,;TP53,splice_donor_variant,,ENST00000576024,;TP53,intron_variant,,ENST00000413465,;TP53,downstream_gene_variant,,ENST00000509690,;TP53,downstream_gene_variant,,ENST00000508793,;TP53,downstream_gene_variant,,ENST00000604348,;TP53,downstream_gene_variant,,ENST00000503591,;TP53,downstream_gene_variant,,ENST00000514944,;TP53,downstream_gene_variant,,ENST00000574684,;TP53,splice_donor_variant,,ENST00000510385,;TP53,splice_donor_variant,,ENST00000504290,;TP53,splice_donor_variant,,ENST00000504937,;TP53,downstream_gene_variant,,ENST00000505014,; C ENSG00000141510 ENST00000269305 Transcript splice_donor_variant -/2579 993/1182 TP53_g.14067T>G,COSM29774,COSM146229 1 TP53 HGNC 11998 protein_coding YES CCDS11118.1 ENSP00000269305 P53_HUMAN S5LQU8_HUMAN,Q761V2_HUMAN,Q6IT77_HUMAN,Q1HGV1_HUMAN,Q0PKT5_HUMAN,L0ES54_HUMAN,L0EQ05_HUMAN,K7PPA8_HUMAN,H2EHT1_HUMAN,G4Y083_HUMAN,E9PCY9_HUMAN,E7ESS1_HUMAN,E7EMR6_HUMAN,B5AKF6_HUMAN,B4DNI2_HUMAN,A4GWD0_HUMAN,A4GWB8_HUMAN,A4GWB5_HUMAN,A4GW97_HUMAN,A4GW76_HUMAN,A4GW75_HUMAN,A4GW74_HUMAN,A4GW67_HUMAN,A2I9Z1_HUMAN,A2I9Z0_HUMAN UPI000002ED67 NM_001126112.2 10-Sep 0,1,1 HIGH 1 SNV 0,1,1 17 7576851 7576851 A C SNP TP53 NM_000546 human genbank 57_37b -1 reviewed splice_site c.993+2 e8+2 1 - - - 17 7576851 7576851 A C SNP TP53 NM_000546 human genbank 57_37b -1 reviewed splice_site c.993+2 e8+2 1 - - - -BRCA1 genome.wustl.edu GRCh37 17 41243581 41243581 0 Nonsense_Mutation SNP G G A rs80357262 TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A G Unknown Germline Phase_IV Capture 1 dbGAP IlluminaGAIIx 0 getma.org/?cm=var&var=hg19,17,41243581,G,A&fts=all ENST00000357654.3:c.3967C>T p.Gln1323Ter p.Q1323* ENST00000357654 23-Oct 0 0 BRCA1,stop_gained,p.Gln1027Ter,ENST00000309486,NM_007297.3;BRCA1,stop_gained,p.Gln1323Ter,ENST00000357654,NM_007294.3;BRCA1,stop_gained,p.Gln1323Ter,ENST00000346315,;BRCA1,stop_gained,p.Gln1323Ter,ENST00000354071,;BRCA1,stop_gained,p.Gln1323Ter,ENST00000471181,NM_007300.3;BRCA1,stop_gained,p.Gln1276Ter,ENST00000493795,;BRCA1,stop_gained,p.Gln88Ter,ENST00000461574,;BRCA1,intron_variant,,ENST00000352993,;BRCA1,intron_variant,,ENST00000351666,;BRCA1,intron_variant,,ENST00000468300,NM_007299.3;BRCA1,intron_variant,,ENST00000491747,NM_007298.3;BRCA1,intron_variant,,ENST00000478531,;BRCA1,intron_variant,,ENST00000493919,;BRCA1,intron_variant,,ENST00000484087,;BRCA1,intron_variant,,ENST00000591534,;BRCA1,intron_variant,,ENST00000487825,;BRCA1,intron_variant,,ENST00000586385,;BRCA1,intron_variant,,ENST00000591849,;BRCA1,downstream_gene_variant,,ENST00000470026,;BRCA1,downstream_gene_variant,,ENST00000477152,;BRCA1,downstream_gene_variant,,ENST00000494123,;BRCA1,downstream_gene_variant,,ENST00000473961,;BRCA1,downstream_gene_variant,,ENST00000497488,;BRCA1,downstream_gene_variant,,ENST00000476777,;BRCA1,3_prime_UTR_variant,,ENST00000461221,;BRCA1,non_coding_transcript_exon_variant,,ENST00000467274,;BRCA1,downstream_gene_variant,,ENST00000492859,;BRCA1,downstream_gene_variant,,ENST00000412061,; A ENSG00000012048 ENST00000357654 Transcript stop_gained 4086/7094 3967/5592 1323 Q/* Caa/Taa rs80357262 1 BRCA1 HGNC 1100 protein_coding CCDS11453.1 ENSP00000350283 BRCA1_HUMAN Q9UE29_HUMAN,Q9NQR3_HUMAN,Q92897_HUMAN,Q7KYU6_HUMAN,Q4EW25_HUMAN,Q3YB53_HUMAN,Q3YB50_HUMAN,Q3YB49_HUMAN,Q3LRH8_HUMAN,Q3B891_HUMAN,K7EPC7_HUMAN,K4K7V3_HUMAN,K4JXS7_HUMAN,K4JUB1_HUMAN,G4V503_HUMAN,G4V502_HUMAN,G4V500_HUMAN,G4V4Z8_HUMAN,G4V4Z7_HUMAN,G1UI37_HUMAN,E9PFZ0_HUMAN,E7EWN5_HUMAN,E7EP70_HUMAN,C9IZW4_HUMAN,C4PFY7_HUMAN UPI0000126AC8 NM_007294.3 23-Oct PIRSF_domain:PIRSF001734,hmmpanther:PTHR13763,hmmpanther:PTHR13763:SF0 not_provided,pathogenic HIGH SNV 1 17 41243581 41243581 G A SNP BRCA1 NM_007294.3 human genbank 58_37c -1 reviewed nonsense c.3967 p.Q1323* 0.949 HMMPfam_BRCT|7CHMMSmart_SM00292|7Csuperfamily_BRCT domain|7CHMMSmart_SM00184|7CPatternScan_ZF_RING_1|7CHMMPfam_zf-C3HC4|7Csuperfamily_RING/U-box - 17 41243581 41243581 G A SNP BRCA1 NM_007294.3 human genbank 58_37c -1 reviewed nonsense c.3967 p.Q1323* 0.949 HMMPfam_BRCT|7CHMMSmart_SM00292|7Csuperfamily_BRCT domain|7CHMMSmart_SM00184|7CPatternScan_ZF_RING_1|7CHMMPfam_zf-C3HC4|7Csuperfamily_RING/U-box - -BRCA1 genome.wustl.edu GRCh37 17 41201181 41201181 0 Missense_Mutation SNP C C A rs80357069 byCluster TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx medium 2.25 getma.org/?cm=msa&ty=f&p=BRCA1_HUMAN&rb=1756&re=1842&var=G1788V getma.org/pdb.php?prot=BRCA1_HUMAN&from=1756&to=1842&var=G1788V getma.org/?cm=var&var=hg19,17,41201181,C,A&fts=all ENST00000357654.3:c.5363G>T p.Gly1788Val p.G1788V ENST00000357654 21/23 0 0 BRCA1,missense_variant,p.Gly1492Val,ENST00000309486,NM_007297.3;BRCA1,missense_variant,p.Gly1788Val,ENST00000357654,NM_007294.3;BRCA1,missense_variant,p.Gly1549Val,ENST00000346315,;BRCA1,missense_variant,p.Gly1523Val,ENST00000354071,;BRCA1,missense_variant,p.Gly1809Val,ENST00000471181,NM_007300.3;BRCA1,missense_variant,p.Gly1741Val,ENST00000493795,;BRCA1,missense_variant,p.Gly646Val,ENST00000352993,;BRCA1,missense_variant,p.Gly605Val,ENST00000351666,;BRCA1,missense_variant,p.Gly684Val,ENST00000491747,NM_007298.3;BRCA1,missense_variant,p.Gly279Val,ENST00000591534,;BRCA1,missense_variant,p.Gly98Val,ENST00000586385,;BRCA1,missense_variant,p.Gly21Val,ENST00000591849,;BRCA1,intron_variant,,ENST00000468300,NM_007299.3;BRCA1,3_prime_UTR_variant,,ENST00000461221,; A ENSG00000012048 ENST00000357654 Transcript missense_variant 5482/7094 5363/5592 1788 G/V gGt/gTt rs80357069,COSM436662 1 BRCA1 HGNC 1100 protein_coding CCDS11453.1 ENSP00000350283 BRCA1_HUMAN Q9UE29_HUMAN,Q9NQR3_HUMAN,Q92897_HUMAN,Q7KYU6_HUMAN,Q4EW25_HUMAN,Q3YB53_HUMAN,Q3YB50_HUMAN,Q3YB49_HUMAN,Q3LRH8_HUMAN,Q3B891_HUMAN,K7EPC7_HUMAN,K4K7V3_HUMAN,K4JXS7_HUMAN,K4JUB1_HUMAN,G4V503_HUMAN,G4V502_HUMAN,G4V500_HUMAN,G4V4Z8_HUMAN,G4V4Z7_HUMAN,G1UI37_HUMAN,E9PFZ0_HUMAN,E7EWN5_HUMAN,E7EP70_HUMAN,C9IZW4_HUMAN,C4PFY7_HUMAN UPI0000126AC8 NM_007294.3 deleterious(0) benign(0.031) 21/23 Gene3D:3.40.50.10190,Pfam_domain:PF00533,PIRSF_domain:PIRSF001734,Prints_domain:PR00493,PROSITE_profiles:PS50172,hmmpanther:PTHR13763,hmmpanther:PTHR13763:SF0,SMART_domains:SM00292,Superfamily_domains:SSF52113 not_provided,pathogenic 0,1 MODERATE SNV 1,1 17 41201181 41201181 C A SNP BRCA1 NM_007294 human genbank 57_37b -1 reviewed missense c.5363 p.G1788V 1 HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain - 17 41201181 41201181 C A SNP BRCA1 NM_007294 human genbank 57_37b -1 reviewed missense c.5363 p.G1788V 1 HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain - -ATM genome.wustl.edu GRCh37 11 108173702 108173702 0 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - G Unknown Germline Phase_IV Capture 1 dbGAP IlluminaGAIIx ENST00000278616.4:c.5443delG p.Asp1815ThrfsTer13 p.D1815Tfs*13 ENST00000278616 36/63 0 0 ATM,frameshift_variant,p.Asp1815ThrfsTer13,ENST00000278616,NM_000051.3;ATM,frameshift_variant,p.Asp1815ThrfsTer13,ENST00000452508,;ATM,non_coding_transcript_exon_variant,,ENST00000524792,;ATM,non_coding_transcript_exon_variant,,ENST00000533690,;ATM,non_coding_transcript_exon_variant,,ENST00000534625,;ATM,upstream_gene_variant,,ENST00000529588,; - ENSG00000149311 ENST00000278616 Transcript frameshift_variant 5827/13147 5442/9171 1814 L/X ttG/tt rs772138812 1 ATM HGNC 795 protein_coding YES CCDS31669.1 ENSP00000278616 ATM_HUMAN M0QXY8_HUMAN,E9PRG7_HUMAN,E9PIN0_HUMAN UPI0000DBEF44 NM_000051.3 36/63 hmmpanther:PTHR11139,hmmpanther:PTHR11139:SF66 HIGH 1 deletion 1 11 108173702 108173702 G - DEL ATM NM_000051.3 human genbank 58_37c 1 reviewed frame_shift_del c.5442 p.D1815fs 1 superfamily_ARM repeat superfamily_ARM repeat|7CHMMPfam_FAT|7Csuperfamily_Protein kinase-like (PK-like)|7CHMMPfam_PI3_PI4_kinase|7CHMMSmart_SM00146|7CPatternScan_PI3_4_KINASE_1|7CPatternScan_PI3_4_KINASE_2|7CHMMPfam_FATC - 11 108173702 108173702 G - DEL ATM NM_000051.3 human genbank 58_37c 1 reviewed frame_shift_del c.5442 p.D1815fs 1 superfamily_ARM repeat superfamily_ARM repeat|7CHMMPfam_FAT|7Csuperfamily_Protein kinase-like (PK-like)|7CHMMPfam_PI3_PI4_kinase|7CHMMSmart_SM00146|7CPatternScan_PI3_4_KINASE_1|7CPatternScan_PI3_4_KINASE_2|7CHMMPfam_FATC - -ATM genome.wustl.edu GRCh37 11 108106472 108106472 0 Frame_Shift_Del DEL T T - novel unknown TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Somatic Phase_IV Capture 1 dbGAP Illumina GAIIx ENST00000278616.4:c.409delT p.Tyr137ThrfsTer16 p.Y137Tfs*16 ENST00000278616 May-63 0 0 ATM,frameshift_variant,p.Tyr137ThrfsTer16,ENST00000278616,NM_000051.3;ATM,frameshift_variant,p.Tyr137ThrfsTer16,ENST00000452508,;ATM,frameshift_variant,p.Tyr137ThrfsTer16,ENST00000527805,;ATM,intron_variant,,ENST00000527891,;ATM,downstream_gene_variant,,ENST00000601453,;ATM,non_coding_transcript_exon_variant,,ENST00000530958,; - ENSG00000149311 ENST00000278616 Transcript frameshift_variant 792/13147 407/9171 136 I/X aTt/at COSM428356,COSM1474979 1 ATM HGNC 795 protein_coding YES CCDS31669.1 ENSP00000278616 ATM_HUMAN M0QXY8_HUMAN,E9PRG7_HUMAN,E9PIN0_HUMAN UPI0000DBEF44 NM_000051.3 May-63 Pfam_domain:PF11640,hmmpanther:PTHR11139,hmmpanther:PTHR11139:SF66 1,1 HIGH 1 deletion 2 1,1 11 108106472 108106472 T - DEL ATM NM_000051 human genbank 57_37b 1 reviewed frame_shift_del c.407 p.Y137fs 0.013 superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC (deletion:cds_exon[108106397,108106561]) 11 108106472 108106472 T - DEL ATM NM_000051 human genbank 57_37b 1 reviewed frame_shift_del c.407 p.Y137fs 0.013 superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC (deletion:cds_exon[108106397,108106561]) -BRCA2 genome.wustl.edu GRCh37 13 108106473 108106473 0 Nonsense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 Germline p.D191G BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106474 108106474 0 Nonsense_Mutation SNP T T C TCGA-A2-A04P-01 TCGA-A2-A04P-10 Somatic p.D191G BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106475 108106475 0 In_Frame_Del DEL T T - TCGA-A1-A0SK-01 TCGA-A1-A0SK-10 Germline p.R2659T BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106476 108106476 0 In_Frame_Del DEL T T - TCGA-A2-A0CM-01 TCGA-A2-A0CM-10 Somatic p.R2659T BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106477 108106477 0 Missense_Mutation SNP T T C TCGA-AR-A1AR-01 TCGA-AR-A1AR-10 Germline p.R2336C BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106478 108106478 0 Missense_Mutation SNP T T C TCGA-B6-A0WX-01 TCGA-B6-A0WX-10 Somatic p.R2336C BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106479 108106479 0 Nonsense_Mutation SNP T T C TCGA-BH-A1F0-01 TCGA-BH-A1F0-10 Germline p.R2000T BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106480 108106480 0 Nonsense_Mutation SNP T T C TCGA-B6-A0I6-01 TCGA-B6-A0I6-10 Somatic p.R2000T BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106481 108106481 0 In_Frame_Del DEL T T - TCGA-BH-A18V-01 TCGA-BH-A18V-10 Germline p.V1270del BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106482 108106482 0 In_Frame_Del DEL T T - TCGA-BH-A18K-01 TCGA-BH-A18K-10 Somatic p.V1270del BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106483 108106483 0 Missense_Mutation SNP T T C TCGA-BH-A0HL-01 TCGA-BH-A0HL-10 Germline p.D3073G BRCA2_HUMAN -BRCA2 genome.wustl.edu GRCh37 13 108106484 108106484 0 Missense_Mutation SNP T T C TCGA-BH-A0E0-01 TCGA-BH-A0E0-10 Somatic p.D3073G BRCA2_HUMAN diff --git a/core/src/test/scripts/test_data/study_missing_caselists/data_CNA.txt b/core/src/test/scripts/test_data/study_missing_caselists/data_CNA.txt deleted file mode 100644 index dd2b2a081b6..00000000000 --- a/core/src/test/scripts/test_data/study_missing_caselists/data_CNA.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 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Sample identifier Subtype description -#STRING STRING STRING -#1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like -TCGA-A7-A13E TCGA-A7-A13E-01 -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like -TCGA-D8-A142 TCGA-D8-A142-01 basal-like -TCGA-D8-A143 TCGA-D8-A143-01 NA -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like -TCGA-A2-A04U TCGA-A2-A04U-01 NA -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like -TCGA-A2-A04T TCGA-A2-A04T-01 NA -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like -TCGA-AO-A128 TCGA-AO-A128-01 NA -TCGA-AO-A129 TCGA-AO-A129-01 basal-like -TCGA-AO-A124 TCGA-AO-A124-01 basal-like -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like -TCGA-BH-A18G TCGA-BH-A18G-01 NA -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like -TCGA-C8-A131 TCGA-C8-A131-01 basal-like -TCGA-C8-A134 TCGA-C8-A134-01 basal-like -TCGA-D8-A147 TCGA-D8-A147-01 basal-like -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like -TCGA-E2-A150 TCGA-E2-A150-01 basal-like -TCGA-E2-A158 TCGA-E2-A158-01 basal-like -TCGA-E2-A159 TCGA-E2-A159-01 basal-like -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A -TCGA-A7-A0CD TCGA-A7-A0CD-01 Luminal A -TCGA-D8-A145 TCGA-D8-A145-01 Luminal A -TCGA-BH-A0HP TCGA-BH-A0HP-01 Luminal A -TCGA-BH-A0DK TCGA-BH-A0DK-01 Luminal A -TCGA-BH-A0E2 TCGA-BH-A0E2-01 Luminal A -TCGA-A2-A0YI TCGA-A2-A0YI-01 Luminal A -TCGA-A2-A0YL TCGA-A2-A0YL-01 Luminal A -TCGA-AO-A0JG TCGA-AO-A0JG-01 Luminal A -TCGA-A2-A0YF TCGA-A2-A0YF-01 Luminal A -TCGA-BH-A0DP TCGA-BH-A0DP-01 Luminal A -TCGA-BH-A0E1 TCGA-BH-A0E1-01 Luminal A -TCGA-A2-A0T5 TCGA-A2-A0T5-01 Luminal A -TCGA-A2-A0T6 TCGA-A2-A0T6-01 Luminal A -TCGA-BH-A0HI TCGA-BH-A0HI-01 Luminal A -TCGA-A2-A0T7 TCGA-A2-A0T7-01 Luminal A -TCGA-BH-A0BJ TCGA-BH-A0BJ-01 Luminal A -TCGA-BH-A0H7 TCGA-BH-A0H7-01 Luminal A -TCGA-BH-A0HF TCGA-BH-A0HF-01 Luminal A -TCGA-BH-A0EB TCGA-BH-A0EB-01 Luminal A -TCGA-BH-A0H6 TCGA-BH-A0H6-01 Luminal A -TCGA-A2-A0YD TCGA-A2-A0YD-01 Luminal A -TCGA-BH-A0HB TCGA-BH-A0HB-01 Luminal A -TCGA-BH-A0HX TCGA-BH-A0HX-01 Luminal A -TCGA-AO-A12H TCGA-AO-A12H-01 Luminal A -TCGA-E2-A10E TCGA-E2-A10E-01 Luminal A -TCGA-A2-A0D3 TCGA-A2-A0D3-01 Luminal A -TCGA-E2-A10F TCGA-E2-A10F-01 Luminal A -TCGA-AO-A03V TCGA-AO-A03V-01 Luminal A -TCGA-A2-A0EW TCGA-A2-A0EW-01 Luminal A -TCGA-BH-A0GY TCGA-BH-A0GY-01 Luminal A -TCGA-A2-A0EV TCGA-A2-A0EV-01 Luminal A -TCGA-BH-A0BC TCGA-BH-A0BC-01 Luminal A -TCGA-A2-A0YC TCGA-A2-A0YC-01 Luminal A -TCGA-A2-A0EU TCGA-A2-A0EU-01 Luminal A -TCGA-A2-A0ET TCGA-A2-A0ET-01 Luminal A -TCGA-A2-A04Y TCGA-A2-A04Y-01 Luminal A -TCGA-BH-A0HQ TCGA-BH-A0HQ-01 Luminal A -TCGA-A2-A0ES TCGA-A2-A0ES-01 Luminal A -TCGA-BH-A0BA TCGA-BH-A0BA-01 Luminal A -TCGA-E2-A10B TCGA-E2-A10B-01 Luminal A -TCGA-BH-A0B1 TCGA-BH-A0B1-01 Luminal A -TCGA-BH-A0DH TCGA-BH-A0DH-01 Luminal A -TCGA-BH-A0B4 TCGA-BH-A0B4-01 Luminal A -TCGA-BH-A0H9 TCGA-BH-A0H9-01 Luminal A -TCGA-AO-A0J9 TCGA-AO-A0J9-01 Luminal A -TCGA-AO-A12G TCGA-AO-A12G-01 Luminal A -TCGA-A2-A0SY TCGA-A2-A0SY-01 Luminal A -TCGA-BH-A0E7 TCGA-BH-A0E7-01 Luminal A -TCGA-AO-A03M TCGA-AO-A03M-01 Luminal A -TCGA-BH-A0BV TCGA-BH-A0BV-01 Luminal A -TCGA-BH-A0B8 TCGA-BH-A0B8-01 Luminal A -TCGA-A2-A0CZ TCGA-A2-A0CZ-01 Luminal A -TCGA-A2-A0SU TCGA-A2-A0SU-01 Luminal A -TCGA-AO-A12E TCGA-AO-A12E-01 Luminal A -TCGA-E2-A106 TCGA-E2-A106-01 Luminal A -TCGA-A2-A0CV TCGA-A2-A0CV-01 Luminal A -TCGA-AO-A12C TCGA-AO-A12C-01 Luminal A -TCGA-B6-A0RG TCGA-B6-A0RG-01 Luminal A -TCGA-A2-A0CS TCGA-A2-A0CS-01 Luminal A -TCGA-A2-A0EO TCGA-A2-A0EO-01 Luminal A -TCGA-A2-A0CQ TCGA-A2-A0CQ-01 Luminal A -TCGA-A2-A0EN TCGA-A2-A0EN-01 Luminal A -TCGA-AO-A12A TCGA-AO-A12A-01 Luminal A -TCGA-A2-A0CP TCGA-A2-A0CP-01 Luminal A -TCGA-AO-A126 TCGA-AO-A126-01 Luminal A -TCGA-AO-A125 TCGA-AO-A125-01 Luminal A -TCGA-A2-A0EM TCGA-A2-A0EM-01 Luminal A -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A -TCGA-AQ-A04L TCGA-AQ-A04L-01 Luminal A -TCGA-B6-A0IO TCGA-B6-A0IO-01 Luminal A -TCGA-B6-A0IP TCGA-B6-A0IP-01 Luminal A -TCGA-B6-A0WZ TCGA-B6-A0WZ-01 Luminal A -TCGA-B6-A0I5 TCGA-B6-A0I5-01 Luminal A -TCGA-B6-A0RV TCGA-B6-A0RV-01 Luminal A -TCGA-B6-A0RO TCGA-B6-A0RO-01 Luminal A -TCGA-B6-A0RN TCGA-B6-A0RN-01 Luminal A -TCGA-B6-A0WT TCGA-B6-A0WT-01 Luminal A -TCGA-B6-A0IA TCGA-B6-A0IA-01 Luminal A -TCGA-B6-A0RI TCGA-B6-A0RI-01 Luminal A -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A -TCGA-A2-A0EX TCGA-A2-A0EX-01 Luminal A -TCGA-AO-A0JJ TCGA-AO-A0JJ-01 Luminal A -TCGA-E2-A105 TCGA-E2-A105-01 Luminal A -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A -TCGA-A8-A06P TCGA-A8-A06P-01 Luminal A -TCGA-A8-A06T TCGA-A8-A06T-01 Luminal A -TCGA-A8-A06Y TCGA-A8-A06Y-01 Luminal A -TCGA-A8-A07E TCGA-A8-A07E-01 Luminal A -TCGA-A8-A07F TCGA-A8-A07F-01 Luminal A -TCGA-A8-A07G TCGA-A8-A07G-01 Luminal A -TCGA-A8-A07J TCGA-A8-A07J-01 Luminal A -TCGA-A8-A07P TCGA-A8-A07P-01 Luminal A -TCGA-A8-A083 TCGA-A8-A083-01 Luminal A -TCGA-A8-A086 TCGA-A8-A086-01 Luminal A -TCGA-A8-A08A TCGA-A8-A08A-01 Luminal A -TCGA-A8-A08C TCGA-A8-A08C-01 Luminal A -TCGA-A8-A08O TCGA-A8-A08O-01 Luminal A -TCGA-A8-A08T TCGA-A8-A08T-01 Luminal A -TCGA-A8-A08Z TCGA-A8-A08Z-01 Luminal A -TCGA-A8-A090 TCGA-A8-A090-01 Luminal A -TCGA-A8-A091 TCGA-A8-A091-01 Luminal A -TCGA-A8-A093 TCGA-A8-A093-01 Luminal A -TCGA-A8-A099 TCGA-A8-A099-01 Luminal A -TCGA-A8-A09A TCGA-A8-A09A-01 Luminal A -TCGA-A8-A09B TCGA-A8-A09B-01 Luminal A -TCGA-A8-A09T TCGA-A8-A09T-01 Luminal A -TCGA-A8-A09V TCGA-A8-A09V-01 Luminal A -TCGA-A8-A0A1 TCGA-A8-A0A1-01 Luminal A -TCGA-A8-A0A2 TCGA-A8-A0A2-01 Luminal A -TCGA-A8-A0A4 TCGA-A8-A0A4-01 Luminal A -TCGA-A8-A0A6 TCGA-A8-A0A6-01 Luminal A -TCGA-A8-A0AD TCGA-A8-A0AD-01 Luminal A -TCGA-AN-A03X TCGA-AN-A03X-01 Luminal A -TCGA-AN-A046 TCGA-AN-A046-01 Luminal A -TCGA-AN-A04A TCGA-AN-A04A-01 Luminal A -TCGA-AN-A0FD TCGA-AN-A0FD-01 Luminal A -TCGA-AN-A0FN TCGA-AN-A0FN-01 Luminal A -TCGA-AN-A0FS TCGA-AN-A0FS-01 Luminal A -TCGA-AN-A0FT TCGA-AN-A0FT-01 Luminal A -TCGA-AN-A0FW TCGA-AN-A0FW-01 Luminal A -TCGA-AN-A0FZ TCGA-AN-A0FZ-01 Luminal A -TCGA-AN-A0XL TCGA-AN-A0XL-01 Luminal A -TCGA-AN-A0XN TCGA-AN-A0XN-01 Luminal A -TCGA-AN-A0XO TCGA-AN-A0XO-01 Luminal A -TCGA-AN-A0XP TCGA-AN-A0XP-01 Luminal A -TCGA-AN-A0XS TCGA-AN-A0XS-01 Luminal A -TCGA-AN-A0XT TCGA-AN-A0XT-01 Luminal A -TCGA-AN-A0XV TCGA-AN-A0XV-01 Luminal A -TCGA-AR-A0TW TCGA-AR-A0TW-01 Luminal A -TCGA-AR-A1AK TCGA-AR-A1AK-01 Luminal A -TCGA-AR-A1AL TCGA-AR-A1AL-01 Luminal A -TCGA-AR-A1AN TCGA-AR-A1AN-01 Luminal A -TCGA-AR-A1AP TCGA-AR-A1AP-01 Luminal A -TCGA-AR-A1AS TCGA-AR-A1AS-01 Luminal A -TCGA-AR-A1AU TCGA-AR-A1AU-01 Luminal A -TCGA-AR-A1AW TCGA-AR-A1AW-01 Luminal A -TCGA-AR-A1AX TCGA-AR-A1AX-01 Luminal A -TCGA-BH-A0AZ TCGA-BH-A0AZ-01 Luminal A -TCGA-BH-A0B0 TCGA-BH-A0B0-01 Luminal A -TCGA-BH-A0BM TCGA-BH-A0BM-01 Luminal A -TCGA-BH-A0BO TCGA-BH-A0BO-01 Luminal A -TCGA-BH-A0BP TCGA-BH-A0BP-01 Luminal A -TCGA-BH-A0BQ TCGA-BH-A0BQ-01 Luminal A -TCGA-BH-A0BR TCGA-BH-A0BR-01 Luminal A -TCGA-BH-A0BS TCGA-BH-A0BS-01 Luminal A -TCGA-BH-A0BT TCGA-BH-A0BT-01 Luminal A -TCGA-BH-A0C1 TCGA-BH-A0C1-01 Luminal A -TCGA-BH-A0DE TCGA-BH-A0DE-01 Luminal A -TCGA-BH-A0DG TCGA-BH-A0DG-01 Luminal A -TCGA-BH-A0DI TCGA-BH-A0DI-01 Luminal A -TCGA-BH-A0DO TCGA-BH-A0DO-01 Luminal A -TCGA-BH-A0DT TCGA-BH-A0DT-01 Luminal A -TCGA-BH-A0DX TCGA-BH-A0DX-01 Luminal A -TCGA-BH-A0E9 TCGA-BH-A0E9-01 Luminal A -TCGA-BH-A0EI TCGA-BH-A0EI-01 Luminal A -TCGA-BH-A0H3 TCGA-BH-A0H3-01 Luminal A -TCGA-BH-A0H5 TCGA-BH-A0H5-01 Luminal A -TCGA-BH-A0HA TCGA-BH-A0HA-01 Luminal A -TCGA-BH-A0W4 TCGA-BH-A0W4-01 Luminal A -TCGA-BH-A0W5 TCGA-BH-A0W5-01 Luminal A -TCGA-BH-A0W7 TCGA-BH-A0W7-01 Luminal A -TCGA-BH-A18H TCGA-BH-A18H-01 Luminal A -TCGA-BH-A18I TCGA-BH-A18I-01 Luminal A -TCGA-C8-A12N TCGA-C8-A12N-01 Luminal A -TCGA-C8-A12O TCGA-C8-A12O-01 Luminal A -TCGA-C8-A12Y TCGA-C8-A12Y-01 Luminal A -TCGA-C8-A132 TCGA-C8-A132-01 Luminal A -TCGA-C8-A133 TCGA-C8-A133-01 Luminal A -TCGA-C8-A1HI TCGA-C8-A1HI-01 Luminal A -TCGA-D8-A141 TCGA-D8-A141-01 Luminal A -TCGA-E2-A14Q TCGA-E2-A14Q-01 Luminal A -TCGA-E2-A14T TCGA-E2-A14T-01 Luminal A -TCGA-E2-A14Z TCGA-E2-A14Z-01 Luminal A -TCGA-E2-A153 TCGA-E2-A153-01 Luminal A -TCGA-E2-A154 TCGA-E2-A154-01 Luminal A -TCGA-E2-A156 TCGA-E2-A156-01 Luminal A -TCGA-E2-A15C TCGA-E2-A15C-01 Luminal A -TCGA-E2-A15D TCGA-E2-A15D-01 Luminal A -TCGA-E2-A15E TCGA-E2-A15E-01 Luminal A -TCGA-E2-A15F TCGA-E2-A15F-01 Luminal A -TCGA-E2-A15G TCGA-E2-A15G-01 Luminal A -TCGA-E2-A15H TCGA-E2-A15H-01 Luminal A -TCGA-E2-A15I TCGA-E2-A15I-01 Luminal A -TCGA-E2-A15J TCGA-E2-A15J-01 Luminal A -TCGA-E2-A15O TCGA-E2-A15O-01 Luminal A -TCGA-E2-A15P TCGA-E2-A15P-01 Luminal A -TCGA-E2-A15R TCGA-E2-A15R-01 Luminal A -TCGA-E2-A1B1 TCGA-E2-A1B1-01 Luminal A -TCGA-E2-A1B4 TCGA-E2-A1B4-01 Luminal A -TCGA-E2-A1B6 TCGA-E2-A1B6-01 Luminal A -TCGA-E2-A1BC TCGA-E2-A1BC-01 Luminal A -TCGA-E2-A1BD TCGA-E2-A1BD-01 Luminal A -TCGA-A2-A0SV TCGA-A2-A0SV-01 Luminal B -TCGA-AO-A03O TCGA-AO-A03O-01 Luminal B -TCGA-A2-A0SW TCGA-A2-A0SW-01 Luminal B -TCGA-B6-A0WW TCGA-B6-A0WW-01 Luminal B -TCGA-BH-A18J TCGA-BH-A18J-01 Luminal B -TCGA-BH-A18L TCGA-BH-A18L-01 Luminal B -TCGA-A8-A06X TCGA-A8-A06X-01 Luminal B -TCGA-B6-A0IC TCGA-B6-A0IC-01 Luminal B -TCGA-BH-A18U TCGA-BH-A18U-01 Luminal B -TCGA-BH-A1EW TCGA-BH-A1EW-01 Luminal B -TCGA-AR-A0TY TCGA-AR-A0TY-01 Luminal B -TCGA-B6-A0X5 TCGA-B6-A0X5-01 Luminal B -TCGA-B6-A0WV TCGA-B6-A0WV-01 Luminal B -TCGA-B6-A0RL TCGA-B6-A0RL-01 Luminal B -TCGA-AR-A0U2 TCGA-AR-A0U2-01 Luminal B -TCGA-B6-A0IB TCGA-B6-A0IB-01 Luminal B -TCGA-AO-A0J7 TCGA-AO-A0J7-01 Luminal B -TCGA-AO-A0J3 TCGA-AO-A0J3-01 Luminal B -TCGA-D8-A13Y TCGA-D8-A13Y-01 Luminal B -TCGA-A7-A13F TCGA-A7-A13F-01 Luminal B -TCGA-BH-A0HU TCGA-BH-A0HU-01 Luminal B -TCGA-D8-A140 TCGA-D8-A140-01 Luminal B -TCGA-A7-A0CJ TCGA-A7-A0CJ-01 Luminal B -TCGA-AQ-A04H TCGA-AQ-A04H-01 Luminal B -TCGA-BH-A0H0 TCGA-BH-A0H0-01 Luminal B -TCGA-BH-A0BD TCGA-BH-A0BD-01 Luminal B -TCGA-A2-A0T3 TCGA-A2-A0T3-01 Luminal B -TCGA-A2-A0T4 TCGA-A2-A0T4-01 Luminal B -TCGA-A2-A0YH TCGA-A2-A0YH-01 Luminal B -TCGA-A2-A0YG TCGA-A2-A0YG-01 Luminal B -TCGA-A2-A0EY TCGA-A2-A0EY-01 Luminal B -TCGA-A2-A0D4 TCGA-A2-A0D4-01 Luminal B -TCGA-BH-A0AY TCGA-BH-A0AY-01 Luminal B -TCGA-E2-A107 TCGA-E2-A107-01 Luminal B -TCGA-AO-A0JI TCGA-AO-A0JI-01 Luminal B -TCGA-E2-A10C TCGA-E2-A10C-01 Luminal B -TCGA-E2-A10A TCGA-E2-A10A-01 Luminal B -TCGA-BH-A0C0 TCGA-BH-A0C0-01 Luminal B -TCGA-E2-A109 TCGA-E2-A109-01 Luminal B -TCGA-AO-A0JC TCGA-AO-A0JC-01 Luminal B -TCGA-BH-A0HW TCGA-BH-A0HW-01 Luminal B -TCGA-AO-A0JD TCGA-AO-A0JD-01 Luminal B -TCGA-AO-A0JM TCGA-AO-A0JM-01 Luminal B -TCGA-A2-A0CW TCGA-A2-A0CW-01 Luminal B -TCGA-A2-A0ER TCGA-A2-A0ER-01 Luminal B -TCGA-A2-A0CT TCGA-A2-A0CT-01 Luminal B -TCGA-AO-A12B TCGA-AO-A12B-01 Luminal B -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B -TCGA-B6-A0IM TCGA-B6-A0IM-01 Luminal B -TCGA-AO-A03P TCGA-AO-A03P-01 Luminal B -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B -TCGA-A8-A06N TCGA-A8-A06N-01 Luminal B -TCGA-A8-A06O TCGA-A8-A06O-01 Luminal B -TCGA-A8-A06Q TCGA-A8-A06Q-01 Luminal B -TCGA-A8-A06R TCGA-A8-A06R-01 Luminal B -TCGA-A8-A06Z TCGA-A8-A06Z-01 Luminal B -TCGA-A8-A079 TCGA-A8-A079-01 Luminal B -TCGA-A8-A07L TCGA-A8-A07L-01 Luminal B -TCGA-A8-A07S TCGA-A8-A07S-01 Luminal B -TCGA-A8-A07W TCGA-A8-A07W-01 Luminal B -TCGA-A8-A07Z TCGA-A8-A07Z-01 Luminal B -TCGA-A8-A082 TCGA-A8-A082-01 Luminal B -TCGA-A8-A084 TCGA-A8-A084-01 Luminal B -TCGA-A8-A085 TCGA-A8-A085-01 Luminal B -TCGA-A8-A08F TCGA-A8-A08F-01 Luminal B -TCGA-A8-A08G TCGA-A8-A08G-01 Luminal B -TCGA-A8-A08I TCGA-A8-A08I-01 Luminal B -TCGA-A8-A08P TCGA-A8-A08P-01 Luminal B -TCGA-A8-A095 TCGA-A8-A095-01 Luminal B -TCGA-A8-A096 TCGA-A8-A096-01 Luminal B -TCGA-A8-A097 TCGA-A8-A097-01 Luminal B -TCGA-A8-A09C TCGA-A8-A09C-01 Luminal B -TCGA-A8-A09D TCGA-A8-A09D-01 Luminal B -TCGA-A8-A09I TCGA-A8-A09I-01 Luminal B -TCGA-A8-A09M TCGA-A8-A09M-01 Luminal B -TCGA-A8-A09N TCGA-A8-A09N-01 Luminal B -TCGA-A8-A09Q TCGA-A8-A09Q-01 Luminal B -TCGA-A8-A09R TCGA-A8-A09R-01 Luminal B -TCGA-A8-A09W TCGA-A8-A09W-01 Luminal B -TCGA-A8-A09Z TCGA-A8-A09Z-01 Luminal B -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B -TCGA-AO-A03U TCGA-AO-A03U-01 NA -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA -TCGA-AO-A03R TCGA-AO-A03R-01 NA -TCGA-AO-A03T TCGA-AO-A03T-01 NA -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA -TCGA-BH-A203 TCGA-BH-A203-01 NA -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA -TCGA-BH-A208 TCGA-BH-A208-01 NA -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA -TCGA-BH-A204 TCGA-BH-A204-01 NA -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA -TCGA-AR-A256 TCGA-AR-A256-01 NA -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA -TCGA-BH-A209 TCGA-BH-A209-01 NA -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA -TCGA-A7-A13G TCGA-A7-A13G-01 NA -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA -TCGA-A7-A26E TCGA-A7-A26E-01 NA -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA -TCGA-A2-A259 TCGA-A2-A259-01 NA -TCGA-A2-A25A TCGA-A2-A25A-01 NA -TCGA-A2-A25B TCGA-A2-A25B-01 NA -TCGA-A2-A25C TCGA-A2-A25C-01 NA -TCGA-A2-A25D TCGA-A2-A25D-01 NA -TCGA-A2-A25E TCGA-A2-A25E-01 NA -TCGA-A2-A25F TCGA-A2-A25F-01 NA -TCGA-A7-A26F TCGA-A7-A26F-01 NA -TCGA-A7-A26G TCGA-A7-A26G-01 NA -TCGA-A7-A26H TCGA-A7-A26H-01 NA -TCGA-A7-A26I TCGA-A7-A26I-01 NA -TCGA-A7-A26J TCGA-A7-A26J-01 NA -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B -TEST-A23C TEST-A23C-01 NA -TEST-A23E TEST-A23E-01 NA -TEST-A23H TEST-A23H-01 NA -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA -TCGA-AR-A24H TCGA-AR-A24H-01 NA -TCGA-AR-A24K TCGA-AR-A24K-01 NA -TCGA-AR-A24L TCGA-AR-A24L-01 NA -TCGA-AR-A24M TCGA-AR-A24M-01 NA -TCGA-AR-A24N TCGA-AR-A24N-01 NA -TCGA-AR-A24O TCGA-AR-A24O-01 NA -TCGA-AR-A24P TCGA-AR-A24P-01 NA -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA -TCGA-AR-A24R TCGA-AR-A24R-01 NA -TCGA-AR-A24S TCGA-AR-A24S-01 NA -TCGA-AR-A24T TCGA-AR-A24T-01 NA -TCGA-AR-A24U TCGA-AR-A24U-01 NA -TCGA-AR-A24V TCGA-AR-A24V-01 NA -TCGA-AR-A24X TCGA-AR-A24X-01 NA -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA -TCGA-AR-A250 TCGA-AR-A250-01 NA -TCGA-AR-A251 TCGA-AR-A251-01 NA -TCGA-AR-A252 TCGA-AR-A252-01 NA -TCGA-AR-A254 TCGA-AR-A254-01 NA -TCGA-AR-A255 TCGA-AR-A255-01 NA -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA -TCGA-BH-A201 TCGA-BH-A201-01 NA -TCGA-BH-A202 TCGA-BH-A202-01 NA -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA -TCGA-C8-A26V TCGA-C8-A26V-01 NA -TCGA-C8-A26W TCGA-C8-A26W-01 NA -TCGA-C8-A26X TCGA-C8-A26X-01 NA -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA -TCGA-C8-A273 TCGA-C8-A273-01 NA -TCGA-C8-A274 TCGA-C8-A274-01 NA -TCGA-C8-A275 TCGA-C8-A275-01 NA -TCGA-C8-A278 TCGA-C8-A278-01 NA -TCGA-C8-A27A TCGA-C8-A27A-01 NA -TCGA-C8-A27B TCGA-C8-A27B-01 NA -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA -TCGA-D8-A27E TCGA-D8-A27E-01 NA -TCGA-D8-A27F TCGA-D8-A27F-01 NA -TCGA-D8-A27G TCGA-D8-A27G-01 NA -TCGA-D8-A27H TCGA-D8-A27H-01 NA -TCGA-D8-A27I TCGA-D8-A27I-01 NA -TCGA-D8-A27K TCGA-D8-A27K-01 NA -TCGA-D8-A27L TCGA-D8-A27L-01 NA -TCGA-D8-A27M TCGA-D8-A27M-01 NA -TCGA-D8-A27N TCGA-D8-A27N-01 NA -TCGA-D8-A27P TCGA-D8-A27P-01 NA -TCGA-D8-A27R TCGA-D8-A27R-01 NA -TCGA-D8-A27T TCGA-D8-A27T-01 NA -TCGA-D8-A27V TCGA-D8-A27V-01 NA -TCGA-D8-A27W TCGA-D8-A27W-01 NA -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA -TCGA-E2-A1II TCGA-E2-A1II-01 NA -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA -TCGA-E9-A226 TCGA-E9-A226-01 NA -TCGA-E9-A227 TCGA-E9-A227-01 NA -TCGA-E9-A228 TCGA-E9-A228-01 NA -TCGA-E9-A229 TCGA-E9-A229-01 NA -TCGA-E9-A22A TCGA-E9-A22A-01 NA -TCGA-E9-A22B TCGA-E9-A22B-01 NA -TCGA-E9-A22D TCGA-E9-A22D-01 NA -TCGA-E9-A22E TCGA-E9-A22E-01 NA -TCGA-E9-A22G TCGA-E9-A22G-01 NA -TCGA-E9-A22H TCGA-E9-A22H-01 NA -TCGA-E9-A243 TCGA-E9-A243-01 NA -TCGA-E9-A244 TCGA-E9-A244-01 NA -TCGA-E9-A245 TCGA-E9-A245-01 NA -TCGA-E9-A247 TCGA-E9-A247-01 NA -TCGA-E9-A248 TCGA-E9-A248-01 NA -TCGA-E9-A249 TCGA-E9-A249-01 NA -TCGA-E9-A24A TCGA-E9-A24A-01 NA -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA -TCGA-AR-A24W TCGA-AR-A24W-01 NA -TEST-A2B8 TEST-A2B8-01 NA -TEST-A2FF TEST-A2FF-01 NA -TEST-A2FB TEST-A2FB-01 NA -TEST-A2FG TEST-A2FG-01 NA -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA -TCGA-E9-A295 TCGA-E9-A295-01 NA -TCGA-E2-A15E TCGA-E2-A15E-06 NA -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA diff --git a/core/src/test/scripts/test_data/study_missing_caselists/meta_CNA.txt b/core/src/test/scripts/test_data/study_missing_caselists/meta_CNA.txt deleted file mode 100644 index 5a08b73f26b..00000000000 --- a/core/src/test/scripts/test_data/study_missing_caselists/meta_CNA.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: spam -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -stable_id: gistic -show_profile_in_analysis_tab: true -profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC -data_filename: data_CNA.txt diff --git a/core/src/test/scripts/test_data/study_missing_caselists/meta_mutations_extended.txt b/core/src/test/scripts/test_data/study_missing_caselists/meta_mutations_extended.txt deleted file mode 100644 index 3430315eea3..00000000000 --- a/core/src/test/scripts/test_data/study_missing_caselists/meta_mutations_extended.txt +++ /dev/null @@ -1,9 +0,0 @@ -cancer_study_identifier: spam -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations -data_filename: brca_tcga_pub.maf -swissprot_identifier: name diff --git a/core/src/test/scripts/test_data/study_missing_caselists/meta_samples.txt b/core/src/test/scripts/test_data/study_missing_caselists/meta_samples.txt deleted file mode 100644 index 3dba005bab9..00000000000 --- a/core/src/test/scripts/test_data/study_missing_caselists/meta_samples.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: spam -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_missing_caselists/meta_study.txt b/core/src/test/scripts/test_data/study_missing_caselists/meta_study.txt deleted file mode 100644 index 3e5e429b8f0..00000000000 --- a/core/src/test/scripts/test_data/study_missing_caselists/meta_study.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: spam -type_of_cancer: brca -name: Spam (spam) -description: Baked beans diff --git a/core/src/test/scripts/test_data/study_oncokb_import/case_lists/cases_cnaseq.txt b/core/src/test/scripts/test_data/study_oncokb_import/case_lists/cases_cnaseq.txt deleted file mode 100644 index d7b40ebe9fd..00000000000 --- a/core/src/test/scripts/test_data/study_oncokb_import/case_lists/cases_cnaseq.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_cnaseq -case_list_name: Samples profiled for mutations and CNA -case_list_description: This is this case list that contains all samples that are profiled for mutations and CNA. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 TCGA-B6-A0I6-01 TCGA-BH-A0HL-01 TEST_SAMPLE_1 TEST_SAMPLE_2 TEST_SAMPLE_3 TEST_SAMPLE_4 TEST_SAMPLE_12 TEST_SAMPLE_13 TEST_SAMPLE_14 TEST_SAMPLE_15 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_oncokb_import/data_clinical_patients.txt b/core/src/test/scripts/test_data/study_oncokb_import/data_clinical_patients.txt deleted file mode 100644 index bcee4c63dfc..00000000000 --- a/core/src/test/scripts/test_data/study_oncokb_import/data_clinical_patients.txt +++ /dev/null @@ -1,845 +0,0 @@ -#Patient Identifier Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 -PATIENT_ID OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TCGA-A2-A04P 1:Recurred/Progressed [Not Available] -TCGA-A1-A0SK 1:DECEASED 31.77 [Not Available] -TCGA-A2-A0CM 1:DECEASED 24.77 1:Recurred/Progressed [Not Available] -TCGA-AR-A1AR 1:DECEASED 17.18 [Not Available] [Not Available] -TCGA-B6-A0WX 1:DECEASED 21.45 1:Recurred/Progressed [Not Available] -TCGA-BH-A1F0 1:DECEASED 25.79 1:Recurred/Progressed [Not Available] -TCGA-B6-A0I6 1:DECEASED 32.56 1:Recurred/Progressed [Not Available] -TCGA-BH-A18V 1:DECEASED 51.09 [Not Available] [Not Available] -TCGA-BH-A18Q 1:DECEASED 55.59 [Not Available] [Not Available] -TCGA-BH-A18K 1:DECEASED 90.74 1:Recurred/Progressed [Not Available] -TCGA-BH-A0HL 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-BH-A0E0 0:LIVING 4.37 0:DiseaseFree 4.37 -TCGA-BH-A0RX 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-A7-A13D 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-BH-A0E6 0:LIVING 9.59 0:DiseaseFree 9.59 -TCGA-AO-A0J4 0:LIVING 9.66 0:DiseaseFree 9.66 -TCGA-A7-A0CE 0:LIVING 8.31 0:DiseaseFree 8.31 -TCGA-A7-A13E 0:LIVING 9.43 0:DiseaseFree 9.43 -TCGA-A7-A0DA 0:LIVING 12.25 0:DiseaseFree 12.25 -TCGA-D8-A142 0:LIVING 2 0:DiseaseFree 2 -TCGA-D8-A143 0:LIVING 5.65 0:DiseaseFree 5.65 -TCGA-AQ-A04J 0:LIVING 5.22 0:DiseaseFree 5.22 -TCGA-BH-A0HN 0:LIVING 16.95 0:DiseaseFree 16.95 -TCGA-A2-A0T0 0:LIVING 11.07 0:DiseaseFree 11.07 -TCGA-A2-A0YE 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-A2-A0YJ 0:LIVING 10.71 0:DiseaseFree 10.71 -TCGA-A2-A0D0 0:LIVING 21.12 0:DiseaseFree 21.12 -TCGA-A2-A04U 0:LIVING 22.01 0:DiseaseFree 22.01 -TCGA-AO-A0J6 0:LIVING 25.46 0:DiseaseFree 25.46 -TCGA-A2-A0YM 0:LIVING 21.72 0:DiseaseFree 21.72 -TCGA-A2-A0D2 0:LIVING 25 0:DiseaseFree 25 -TCGA-BH-A0B3 0:LIVING 39.52 0:DiseaseFree 39.52 -TCGA-A2-A04Q 0:LIVING 41.89 0:DiseaseFree 41.89 -TCGA-A2-A0SX 0:LIVING 42.32 1:Recurred/Progressed [Not Available] -TCGA-AO-A0JL 0:LIVING 43.33 0:DiseaseFree 43.33 -TCGA-AO-A12F 0:LIVING 48.33 0:DiseaseFree 48.33 -TCGA-BH-A0B9 0:LIVING 51.65 0:DiseaseFree 51.65 -TCGA-A2-A04T 0:LIVING 64.06 0:DiseaseFree 64.06 -TCGA-B6-A0RT 0:LIVING 89.39 0:DiseaseFree 89.39 -TCGA-AO-A128 0:LIVING 94.52 0:DiseaseFree 94.52 -TCGA-AO-A129 0:LIVING 96.03 0:DiseaseFree 96.03 -TCGA-AO-A124 0:LIVING 102.47 0:DiseaseFree 102.47 -TCGA-B6-A0RU 0:LIVING 131.12 0:DiseaseFree 131.12 -TCGA-B6-A0IQ 0:LIVING 127.18 0:DiseaseFree 127.18 -TCGA-B6-A0I2 0:LIVING 125.7 0:DiseaseFree 125.7 -TCGA-B6-A0IJ 0:LIVING 176.85 0:DiseaseFree 176.85 -TCGA-B6-A0X1 0:LIVING 186.31 0:DiseaseFree 186.31 -TCGA-B6-A0RE 0:LIVING 211.38 0:DiseaseFree 211.38 -TCGA-A2-A0ST 0:LIVING 53.98 0:DiseaseFree 53.98 -TCGA-AR-A0TP 0:LIVING 78.59 0:DiseaseFree 78.59 -TCGA-A1-A0SO 0:LIVING 27.99 0:DiseaseFree 27.99 -TCGA-A8-A07C 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A07O 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A07R 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-A8-A07U 0:LIVING 9.95 0:DiseaseFree 9.95 -TCGA-A8-A08H 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08R 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04D 0:LIVING 1.71 0:DiseaseFree 1.71 -TCGA-AN-A0AL 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-AN-A0AR 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0AT 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0FJ 0:LIVING 7.92 0:DiseaseFree 7.92 -TCGA-AN-A0FL 0:LIVING 7.56 0:DiseaseFree 7.56 -TCGA-AN-A0FX 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0G0 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-AN-A0XU 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AR-A0TS 0:LIVING 37.39 0:DiseaseFree 37.39 -TCGA-AR-A0TU 0:LIVING 11.83 0:DiseaseFree 11.83 -TCGA-AR-A0U0 0:LIVING 0.26 0:DiseaseFree 0.26 -TCGA-AR-A0U1 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-AR-A0U4 0:LIVING 53.45 0:DiseaseFree 53.45 -TCGA-AR-A1AH 0:LIVING 75.5 0:DiseaseFree 75.5 -TCGA-AR-A1AI 0:LIVING 61.8 0:DiseaseFree 61.8 -TCGA-AR-A1AJ 0:LIVING 52.7 0:DiseaseFree 52.7 -TCGA-AR-A1AQ 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-AR-A1AY 0:LIVING 20.17 0:DiseaseFree 20.17 -TCGA-BH-A0AV 0:LIVING 38.77 0:DiseaseFree 38.77 -TCGA-BH-A0BG 0:LIVING 24.84 0:DiseaseFree 24.84 -TCGA-BH-A0BL 0:LIVING 43.99 0:DiseaseFree 43.99 -TCGA-BH-A0BW 0:LIVING 11.66 0:DiseaseFree 11.66 -TCGA-BH-A0DL 0:LIVING 48.2 0:DiseaseFree 48.2 -TCGA-BH-A0WA 0:LIVING 12.22 0:DiseaseFree 12.22 -TCGA-BH-A18G 0:LIVING 2 0:DiseaseFree 2 -TCGA-C8-A12K 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12V 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A131 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A134 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A147 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-E2-A14N 0:LIVING 44.35 0:DiseaseFree 44.35 -TCGA-E2-A14R 0:LIVING 27.76 0:DiseaseFree 27.76 -TCGA-E2-A14X 0:LIVING 22.73 0:DiseaseFree 22.73 -TCGA-E2-A14Y 0:LIVING 22.6 0:DiseaseFree 22.6 -TCGA-E2-A150 0:LIVING 19.42 0:DiseaseFree 19.42 -TCGA-E2-A158 0:LIVING 14.78 0:DiseaseFree 14.78 -TCGA-E2-A159 0:LIVING 16.92 0:DiseaseFree 16.92 -TCGA-E2-A1AZ 0:LIVING 64.52 0:DiseaseFree 64.52 -TCGA-E2-A1B5 0:LIVING 25.43 0:DiseaseFree 25.43 -TCGA-A8-A08L 1:DECEASED 9.99 [Not Available] [Not Available] -TCGA-BH-A1EV 1:DECEASED 11.99 1:Recurred/Progressed [Not Available] -TCGA-B6-A0I9 1:DECEASED 12.12 1:Recurred/Progressed [Not Available] -TCGA-A8-A09X 1:DECEASED 14 [Not Available] [Not Available] -TCGA-B6-A0IK 1:DECEASED 18.76 1:Recurred/Progressed [Not Available] -TCGA-BH-A18P 1:DECEASED 30.26 1:Recurred/Progressed [Not Available] -TCGA-A8-A08J 1:DECEASED 37.03 [Not Available] [Not Available] -TCGA-BH-A18R 1:DECEASED 37.49 0:DiseaseFree 36.11 -TCGA-AR-A1AT 1:DECEASED 41.79 [Not Available] [Not Available] -TCGA-B6-A0RS 1:DECEASED 100.6 1:Recurred/Progressed [Not Available] -TCGA-BH-A0DZ 0:LIVING 16.26 0:DiseaseFree 16.26 -TCGA-A2-A0T1 0:LIVING 10.58 0:DiseaseFree 10.58 -TCGA-AO-A0J2 0:LIVING 19.22 0:DiseaseFree 19.22 -TCGA-BH-A0AW 0:LIVING 20.43 0:DiseaseFree 20.43 -TCGA-BH-A0EE 0:LIVING 30.98 0:DiseaseFree 30.98 -TCGA-A2-A0D1 0:LIVING 25.82 0:DiseaseFree 25.82 -TCGA-AO-A03N 0:LIVING 54.04 1:Recurred/Progressed [Not Available] -TCGA-A2-A0CY 0:LIVING 42.32 0:DiseaseFree 42.32 -TCGA-A2-A04X 0:LIVING 44.32 0:DiseaseFree 44.32 -TCGA-A2-A0CX 0:LIVING 42.81 0:DiseaseFree 42.81 -TCGA-A2-A04W 0:LIVING 63.01 0:DiseaseFree 63.01 -TCGA-AO-A12D 0:LIVING 64 0:DiseaseFree 64 -TCGA-A2-A0CL 0:LIVING 60.02 0:DiseaseFree 60.02 -TCGA-AO-A0JE 0:LIVING 64.56 0:DiseaseFree 64.56 -TCGA-A2-A0EQ 0:LIVING 67.45 0:DiseaseFree 67.45 -TCGA-AO-A03L 0:LIVING 80.23 0:DiseaseFree 80.23 -TCGA-B6-A0RH 0:LIVING 188.84 0:DiseaseFree 188.84 -TCGA-A8-A075 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-A8-A076 0:LIVING 53.91 0:DiseaseFree 53.91 -TCGA-A8-A07B 0:LIVING 32.98 0:DiseaseFree 32.98 -TCGA-A8-A07I 0:LIVING 14 0:DiseaseFree 14 -TCGA-A8-A081 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08B 0:LIVING 23.06 0:DiseaseFree 23.06 -TCGA-A8-A08X 0:LIVING 33.97 0:DiseaseFree 33.97 -TCGA-A8-A092 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-A8-A094 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A09G 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A0A7 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04C 0:LIVING 1.77 0:DiseaseFree 1.77 -TCGA-AN-A0FV 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AR-A0TX 0:LIVING 0.49 0:DiseaseFree 0.49 -TCGA-BH-A0B7 0:LIVING 56.93 0:DiseaseFree 56.93 -TCGA-BH-A0HY 0:LIVING 28.48 0:DiseaseFree 28.48 -TCGA-C8-A12L 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12P 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Q 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12T 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Z 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A130 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A135 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A137 0:LIVING 0.1 0:DiseaseFree 0.1 -TCGA-C8-A138 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A1HF 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A13Z 0:LIVING 6.9 0:DiseaseFree 6.9 -TCGA-E2-A14P 0:LIVING 16 0:DiseaseFree 16 -TCGA-E2-A14V 0:LIVING 24.57 0:DiseaseFree 24.57 -TCGA-E2-A152 0:LIVING 19.32 1:Recurred/Progressed [Not Available] -TCGA-E2-A1B0 0:LIVING 41.76 0:DiseaseFree 41.76 -TCGA-A2-A0CU 1:DECEASED 5.16 0:DiseaseFree 4.57 -TCGA-AR-A0TR 1:DECEASED 5.26 [Not Available] [Not Available] -TCGA-BH-A18T 1:DECEASED 7.36 1:Recurred/Progressed [Not Available] -TCGA-B6-A0I8 1:DECEASED 24.61 1:Recurred/Progressed [Not Available] -TCGA-B6-A0X4 1:DECEASED 28.22 1:Recurred/Progressed [Not Available] -TCGA-A8-A06U 1:DECEASED 28.98 [Not Available] [Not Available] -TCGA-BH-A0EA 1:DECEASED 32.62 0:DiseaseFree 27.3 -TCGA-BH-A18N 1:DECEASED 37.72 [Not Available] [Not Available] -TCGA-BH-A1EU 1:DECEASED 42.25 0:DiseaseFree [Not Available] -TCGA-B6-A0X7 1:DECEASED 58.84 [Not Available] [Not Available] -TCGA-A2-A04V 1:DECEASED 63.08 1:Recurred/Progressed [Not Available] -TCGA-BH-A18S 1:DECEASED 66 0:DiseaseFree 66 -TCGA-BH-A18M 1:DECEASED 72.51 [Not Available] [Not Available] -TCGA-B6-A0RM 1:DECEASED 77.96 0:DiseaseFree 77.96 -TCGA-BH-A1ET 1:DECEASED 82.79 0:DiseaseFree [Not Available] -TCGA-B6-A0IN 1:DECEASED 84.53 1:Recurred/Progressed [Not Available] -TCGA-BH-A1EO 1:DECEASED 91.92 0:DiseaseFree [Not Available] -TCGA-B6-A0WS 1:DECEASED 97.41 0:DiseaseFree [Not Available] -TCGA-B6-A0RP 1:DECEASED 102.7 [Not Available] [Not Available] -TCGA-B6-A0IH 1:DECEASED 112.29 [Not Available] [Not Available] -TCGA-B6-A0WY 1:DECEASED 113.67 1:Recurred/Progressed [Not Available] -TCGA-BH-A1ES 1:DECEASED 113.74 1:Recurred/Progressed [Not Available] -TCGA-B6-A0X0 1:DECEASED 129.61 [Not Available] [Not Available] -TCGA-B6-A0RQ 1:DECEASED 140.38 0:DiseaseFree [Not Available] -TCGA-B6-A0IG 1:DECEASED 146.39 1:Recurred/Progressed [Not Available] -TCGA-BH-A0HO 0:LIVING 2.5 0:DiseaseFree 2.5 -TCGA-BH-A0DS 0:LIVING 2.53 0:DiseaseFree 2.53 -TCGA-BH-A0DQ 0:LIVING 3.22 0:DiseaseFree 3.22 -TCGA-BH-A0HK 0:LIVING 5.85 0:DiseaseFree 5.85 -TCGA-A7-A0CG 0:LIVING 5.45 0:DiseaseFree 5.45 -TCGA-A7-A0CH 0:LIVING 5.29 0:DiseaseFree 5.29 -TCGA-A7-A0DB 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-A7-A0D9 0:LIVING 5.22 0:DiseaseFree 5.22 -TCGA-AO-A0J8 0:LIVING 9.1 0:DiseaseFree 9.1 -TCGA-BH-A0GZ 0:LIVING 10.78 0:DiseaseFree 10.78 -TCGA-AO-A0JA 0:LIVING 11.37 1:Recurred/Progressed [Not Available] -TCGA-AO-A0JF 0:LIVING 11.63 0:DiseaseFree 11.63 -TCGA-A7-A0CD 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-D8-A145 0:LIVING 1.61 0:DiseaseFree 1.61 -TCGA-BH-A0HP 0:LIVING 13.6 0:DiseaseFree 13.6 -TCGA-BH-A0DK 0:LIVING 13.9 0:DiseaseFree 13.9 -TCGA-BH-A0E2 0:LIVING 12.35 0:DiseaseFree 12.35 -TCGA-A2-A0YI 0:LIVING 11.76 0:DiseaseFree 11.76 -TCGA-A2-A0YL 0:LIVING 8.8 0:DiseaseFree 8.8 -TCGA-AO-A0JG 0:LIVING 14.75 0:DiseaseFree 14.75 -TCGA-A2-A0YF 0:LIVING 9.49 0:DiseaseFree 9.49 -TCGA-BH-A0DP 0:LIVING 15.64 0:DiseaseFree 15.64 -TCGA-BH-A0E1 0:LIVING 15.67 0:DiseaseFree 15.67 -TCGA-A2-A0T5 0:LIVING 10.55 0:DiseaseFree 10.55 -TCGA-A2-A0T6 0:LIVING 11.3 0:DiseaseFree 11.3 -TCGA-BH-A0HI 0:LIVING 20.34 0:DiseaseFree 20.34 -TCGA-A2-A0T7 0:LIVING 13.04 0:DiseaseFree 13.04 -TCGA-BH-A0BJ 0:LIVING 21.68 0:DiseaseFree 21.68 -TCGA-BH-A0H7 0:LIVING 23.03 0:DiseaseFree 23.03 -TCGA-BH-A0HF 0:LIVING 23.88 0:DiseaseFree 23.88 -TCGA-BH-A0EB 0:LIVING 24.48 0:DiseaseFree 24.48 -TCGA-BH-A0H6 0:LIVING 24.54 0:DiseaseFree 24.54 -TCGA-A2-A0YD 0:LIVING 18.07 0:DiseaseFree 18.07 -TCGA-BH-A0HB 0:LIVING 26.48 0:DiseaseFree 26.48 -TCGA-BH-A0HX 0:LIVING 27.24 0:DiseaseFree 27.24 -TCGA-AO-A12H 0:LIVING 28.32 0:DiseaseFree 28.32 -TCGA-E2-A10E 0:LIVING 13.73 0:DiseaseFree 13.73 -TCGA-A2-A0D3 0:LIVING 24.18 0:DiseaseFree 24.18 -TCGA-E2-A10F 0:LIVING 11.83 0:DiseaseFree 11.83 -TCGA-AO-A03V 0:LIVING 29.11 0:DiseaseFree 29.11 -TCGA-A2-A0EW 0:LIVING 25.3 0:DiseaseFree 25.3 -TCGA-BH-A0GY 0:LIVING 30.13 0:DiseaseFree 30.13 -TCGA-A2-A0EV 0:LIVING 17.91 0:DiseaseFree 17.91 -TCGA-BH-A0BC 0:LIVING 32 0:DiseaseFree 32 -TCGA-A2-A0YC 0:LIVING 21.12 0:DiseaseFree 21.12 -TCGA-A2-A0EU 0:LIVING 24.08 0:DiseaseFree 24.08 -TCGA-A2-A0ET 0:LIVING 26.51 0:DiseaseFree 26.51 -TCGA-A2-A04Y 0:LIVING 25.07 0:DiseaseFree 25.07 -TCGA-BH-A0HQ 0:LIVING 36.83 0:DiseaseFree 36.83 -TCGA-A2-A0ES 0:LIVING 32.89 0:DiseaseFree 32.89 -TCGA-BH-A0BA 0:LIVING 37.19 0:DiseaseFree 37.19 -TCGA-E2-A10B 0:LIVING 24.57 0:DiseaseFree 24.57 -TCGA-BH-A0B1 0:LIVING 37.72 0:DiseaseFree 37.72 -TCGA-BH-A0DH 0:LIVING 37.98 0:DiseaseFree 37.98 -TCGA-BH-A0B4 0:LIVING 39.13 0:DiseaseFree 39.13 -TCGA-BH-A0H9 0:LIVING 40.97 0:DiseaseFree 40.97 -TCGA-AO-A0J9 0:LIVING 41.23 1:Recurred/Progressed [Not Available] -TCGA-AO-A12G 0:LIVING 41.56 0:DiseaseFree 41.56 -TCGA-A2-A0SY 0:LIVING 37.91 0:DiseaseFree 37.91 -TCGA-BH-A0E7 0:LIVING 44.75 0:DiseaseFree 44.75 -TCGA-AO-A03M 0:LIVING 47.8 0:DiseaseFree 47.8 -TCGA-BH-A0BV 0:LIVING 49.9 0:DiseaseFree 49.9 -TCGA-BH-A0B8 0:LIVING 51.55 0:DiseaseFree 51.55 -TCGA-A2-A0CZ 0:LIVING 43.96 0:DiseaseFree 43.96 -TCGA-A2-A0SU 0:LIVING 44.38 0:DiseaseFree 44.38 -TCGA-AO-A12E 0:LIVING 57.23 0:DiseaseFree 57.23 -TCGA-E2-A106 0:LIVING 51.09 0:DiseaseFree 51.09 -TCGA-A2-A0CV 0:LIVING 61.44 0:DiseaseFree 61.44 -TCGA-AO-A12C 0:LIVING 65.48 0:DiseaseFree 65.48 -TCGA-B6-A0RG 0:LIVING 68.4 0:DiseaseFree 68.4 -TCGA-A2-A0CS 0:LIVING 75.5 0:DiseaseFree 75.5 -TCGA-A2-A0EO 0:LIVING 71.65 0:DiseaseFree 71.65 -TCGA-A2-A0CQ 0:LIVING 78.59 0:DiseaseFree 78.59 -TCGA-A2-A0EN 0:LIVING 82.63 0:DiseaseFree 82.63 -TCGA-AO-A12A 0:LIVING 90.48 0:DiseaseFree 90.48 -TCGA-A2-A0CP 0:LIVING 81.97 0:DiseaseFree 81.97 -TCGA-AO-A126 0:LIVING 93.63 0:DiseaseFree 93.63 -TCGA-AO-A125 0:LIVING 99.15 0:DiseaseFree 99.15 -TCGA-A2-A0EM 0:LIVING 90.58 0:DiseaseFree 90.58 -TCGA-A2-A04N 0:LIVING 103.59 0:DiseaseFree 103.59 -TCGA-AQ-A04L 0:LIVING 109.86 0:DiseaseFree 109.86 -TCGA-B6-A0IO 0:LIVING 110.06 0:DiseaseFree 110.06 -TCGA-B6-A0IP 0:LIVING 110.85 0:DiseaseFree 110.85 -TCGA-B6-A0WZ 0:LIVING 129.48 0:DiseaseFree 129.48 -TCGA-B6-A0I5 0:LIVING 149.45 0:DiseaseFree 149.45 -TCGA-B6-A0RV 0:LIVING 157.3 0:DiseaseFree 157.3 -TCGA-B6-A0RO 0:LIVING 161.9 0:DiseaseFree 161.9 -TCGA-B6-A0RN 0:LIVING 172.84 0:DiseaseFree 172.84 -TCGA-B6-A0WT 0:LIVING 177.28 0:DiseaseFree 177.28 -TCGA-B6-A0IA 0:LIVING 220.71 0:DiseaseFree 220.71 -TCGA-B6-A0RI 0:LIVING 223.24 1:Recurred/Progressed [Not Available] -TCGA-A1-A0SE 0:LIVING 43.37 0:DiseaseFree 43.37 -TCGA-A2-A0EX 0:LIVING 18.04 0:DiseaseFree 18.04 -TCGA-AO-A0JJ 0:LIVING 49.67 0:DiseaseFree 49.67 -TCGA-E2-A105 0:LIVING 38.21 0:DiseaseFree 38.21 -TCGA-A1-A0SD 0:LIVING 14.36 0:DiseaseFree 14.36 -TCGA-A1-A0SH 0:LIVING 47.21 0:DiseaseFree 47.21 -TCGA-A1-A0SJ 0:LIVING 14 0:DiseaseFree 14 -TCGA-A8-A06P 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A06T 0:LIVING 41.03 0:DiseaseFree 41.03 -TCGA-A8-A06Y 0:LIVING 25.99 0:DiseaseFree 25.99 -TCGA-A8-A07E 0:LIVING 19.97 0:DiseaseFree 19.97 -TCGA-A8-A07F 0:LIVING 18.92 0:DiseaseFree 18.92 -TCGA-A8-A07G 0:LIVING 18.92 0:DiseaseFree 18.92 -TCGA-A8-A07J 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A07P 0:LIVING 10.97 0:DiseaseFree 10.97 -TCGA-A8-A083 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A086 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A08A 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-A8-A08C 0:LIVING 19.94 0:DiseaseFree 19.94 -TCGA-A8-A08O 0:LIVING 30.95 0:DiseaseFree 30.95 -TCGA-A8-A08T 0:LIVING 92.97 0:DiseaseFree 92.97 -TCGA-A8-A08Z 0:LIVING 39.98 0:DiseaseFree 39.98 -TCGA-A8-A090 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A091 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A093 0:LIVING 17.91 0:DiseaseFree 17.91 -TCGA-A8-A099 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A09A 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A09B 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A09T 0:LIVING 18.99 0:DiseaseFree 18.99 -TCGA-A8-A09V 0:LIVING 15.01 0:DiseaseFree 15.01 -TCGA-A8-A0A1 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A0A2 0:LIVING 18.99 0:DiseaseFree 18.99 -TCGA-A8-A0A4 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A0A6 0:LIVING 21.03 0:DiseaseFree 21.03 -TCGA-A8-A0AD 0:LIVING 38.01 0:DiseaseFree 38.01 -TCGA-AN-A03X 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A046 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A04A 0:LIVING 2.92 0:DiseaseFree 2.92 -TCGA-AN-A0FD 0:LIVING 6.41 0:DiseaseFree 6.41 -TCGA-AN-A0FN 0:LIVING 7.16 0:DiseaseFree 7.16 -TCGA-AN-A0FS 0:LIVING 6.27 0:DiseaseFree 6.27 -TCGA-AN-A0FT 0:LIVING 6.01 0:DiseaseFree 6.01 -TCGA-AN-A0FW 0:LIVING 0.36 0:DiseaseFree 0.36 -TCGA-AN-A0FZ 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XL 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XN 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XO 0:LIVING 12.32 0:DiseaseFree 12.32 -TCGA-AN-A0XP 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0XS 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XT 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XV 0:LIVING 5.32 0:DiseaseFree 5.32 -TCGA-AR-A0TW 0:LIVING 24.28 0:DiseaseFree 24.28 -TCGA-AR-A1AK 0:LIVING 51.19 0:DiseaseFree 51.19 -TCGA-AR-A1AL 0:LIVING 48.79 0:DiseaseFree 48.79 -TCGA-AR-A1AN 0:LIVING 43.66 0:DiseaseFree 43.66 -TCGA-AR-A1AP 0:LIVING 39.92 0:DiseaseFree 39.92 -TCGA-AR-A1AS 0:LIVING 40.8 0:DiseaseFree 40.8 -TCGA-AR-A1AU 0:LIVING 46.29 0:DiseaseFree 46.29 -TCGA-AR-A1AW 0:LIVING 35.22 0:DiseaseFree 35.22 -TCGA-AR-A1AX 0:LIVING 36.24 0:DiseaseFree 36.24 -TCGA-BH-A0AZ 0:LIVING 28.48 0:DiseaseFree 28.48 -TCGA-BH-A0B0 0:LIVING 46.88 0:DiseaseFree 46.88 -TCGA-BH-A0BM 0:LIVING 36.7 0:DiseaseFree 36.7 -TCGA-BH-A0BO 0:LIVING 35.65 0:DiseaseFree 35.65 -TCGA-BH-A0BP 0:LIVING 48.66 0:DiseaseFree 48.66 -TCGA-BH-A0BQ 0:LIVING 27.14 0:DiseaseFree 27.14 -TCGA-BH-A0BR 0:LIVING 53.62 0:DiseaseFree 53.62 -TCGA-BH-A0BS 0:LIVING 53.88 0:DiseaseFree 53.88 -TCGA-BH-A0BT 0:LIVING 45.53 0:DiseaseFree 45.53 -TCGA-BH-A0C1 0:LIVING 43.96 0:DiseaseFree 43.96 -TCGA-BH-A0DE 0:LIVING 31.14 0:DiseaseFree 31.14 -TCGA-BH-A0DG 0:LIVING 23.42 0:DiseaseFree 23.42 -TCGA-BH-A0DI 0:LIVING 22.11 0:DiseaseFree 22.11 -TCGA-BH-A0DO 0:LIVING 17.25 0:DiseaseFree 17.25 -TCGA-BH-A0DT 0:LIVING 38.44 0:DiseaseFree 38.44 -TCGA-BH-A0DX 0:LIVING 47.37 0:DiseaseFree 47.37 -TCGA-BH-A0E9 0:LIVING 46.16 0:DiseaseFree 46.16 -TCGA-BH-A0EI 0:LIVING 24.41 0:DiseaseFree 24.41 -TCGA-BH-A0H3 0:LIVING 37.75 0:DiseaseFree 37.75 -TCGA-BH-A0H5 0:LIVING 35.48 0:DiseaseFree 35.48 -TCGA-BH-A0HA 0:LIVING 28.12 0:DiseaseFree 28.12 -TCGA-BH-A0W4 0:LIVING 5.75 0:DiseaseFree 5.75 -TCGA-BH-A0W5 0:LIVING 17.84 0:DiseaseFree 17.84 -TCGA-BH-A0W7 0:LIVING 18.33 0:DiseaseFree 18.33 -TCGA-BH-A18H 0:LIVING 0 0:DiseaseFree 0 -TCGA-BH-A18I 0:LIVING 7.23 0:DiseaseFree 7.23 -TCGA-C8-A12N 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12O 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Y 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A132 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A133 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HI 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-D8-A141 0:LIVING 3.71 0:DiseaseFree 3.71 -TCGA-E2-A14Q 0:LIVING 32 0:DiseaseFree 32 -TCGA-E2-A14T 0:LIVING 29.24 0:DiseaseFree 29.24 -TCGA-E2-A14Z 0:LIVING 17.02 1:Recurred/Progressed [Not Available] -TCGA-E2-A153 0:LIVING 19.25 0:DiseaseFree 19.25 -TCGA-E2-A154 0:LIVING 10.68 0:DiseaseFree 10.68 -TCGA-E2-A156 0:LIVING 15.8 0:DiseaseFree 15.8 -TCGA-E2-A15C 0:LIVING 16.3 0:DiseaseFree 16.3 -TCGA-E2-A15D 0:LIVING 10.35 0:DiseaseFree 10.35 -TCGA-E2-A15E 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-E2-A15F 0:LIVING 15.38 0:DiseaseFree 15.38 -TCGA-E2-A15G 0:LIVING 10.35 0:DiseaseFree 10.35 -TCGA-E2-A15H 0:LIVING 1.38 0:DiseaseFree 1.38 -TCGA-E2-A15I 0:LIVING 13.5 0:DiseaseFree 13.5 -TCGA-E2-A15J 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-E2-A15O 0:LIVING 12.98 0:DiseaseFree 12.98 -TCGA-E2-A15P 0:LIVING 10.35 0:DiseaseFree 10.35 -TCGA-E2-A15R 0:LIVING 10.84 0:DiseaseFree 10.84 -TCGA-E2-A1B1 0:LIVING 44.71 0:DiseaseFree 44.71 -TCGA-E2-A1B4 0:LIVING 29.93 0:DiseaseFree 29.93 -TCGA-E2-A1B6 0:LIVING 11.1 0:DiseaseFree 11.1 -TCGA-E2-A1BC 0:LIVING 9.76 0:DiseaseFree 9.76 -TCGA-E2-A1BD 0:LIVING 10.41 0:DiseaseFree 10.41 -TCGA-A2-A0SV 1:DECEASED 27.1 1:Recurred/Progressed [Not Available] -TCGA-AO-A03O 1:DECEASED 81.57 0:DiseaseFree 32.62 -TCGA-A2-A0SW 1:DECEASED 44.81 1:Recurred/Progressed [Not Available] -TCGA-B6-A0WW 1:DECEASED 18.3 1:Recurred/Progressed [Not Available] -TCGA-BH-A18J 1:DECEASED 20.07 1:Recurred/Progressed [Not Available] -TCGA-BH-A18L 1:DECEASED 26.64 [Not Available] [Not Available] -TCGA-A8-A06X 1:DECEASED 30.98 [Not Available] [Not Available] -TCGA-B6-A0IC 1:DECEASED 50.66 [Not Available] [Not Available] -TCGA-BH-A18U 1:DECEASED 51.35 0:DiseaseFree 43.27 -TCGA-BH-A1EW 1:DECEASED 55.65 1:Recurred/Progressed [Not Available] -TCGA-AR-A0TY 1:DECEASED 55.82 [Not Available] [Not Available] -TCGA-B6-A0X5 1:DECEASED 68.89 1:Recurred/Progressed [Not Available] -TCGA-B6-A0WV 1:DECEASED 79.57 0:DiseaseFree 79.57 -TCGA-B6-A0RL 1:DECEASED 81.11 0:DiseaseFree 81.11 -TCGA-AR-A0U2 1:DECEASED 83.81 1:Recurred/Progressed [Not Available] -TCGA-B6-A0IB 1:DECEASED 129.48 1:Recurred/Progressed [Not Available] -TCGA-AO-A0J7 0:LIVING 8.54 0:DiseaseFree 8.54 -TCGA-AO-A0J3 0:LIVING 9.92 0:DiseaseFree 9.92 -TCGA-D8-A13Y 0:LIVING 8.67 0:DiseaseFree 8.67 -TCGA-A7-A13F 0:LIVING 6.44 0:DiseaseFree 6.44 -TCGA-BH-A0HU 0:LIVING 12.88 0:DiseaseFree 12.88 -TCGA-D8-A140 0:LIVING 0.89 0:DiseaseFree 0.89 -TCGA-A7-A0CJ 0:LIVING 6.18 0:DiseaseFree 6.18 -TCGA-AQ-A04H 0:LIVING 14.42 0:DiseaseFree 14.42 -TCGA-BH-A0H0 0:LIVING 15.15 0:DiseaseFree 15.15 -TCGA-BH-A0BD 0:LIVING 18.2 0:DiseaseFree 18.2 -TCGA-A2-A0T3 0:LIVING 14.98 0:DiseaseFree 14.98 -TCGA-A2-A0T4 0:LIVING 12.98 0:DiseaseFree 12.98 -TCGA-A2-A0YH 0:LIVING 12.45 0:DiseaseFree 12.45 -TCGA-A2-A0YG 0:LIVING 13.27 0:DiseaseFree 13.27 -TCGA-A2-A0EY 0:LIVING 15.93 0:DiseaseFree 15.93 -TCGA-A2-A0D4 0:LIVING 16.3 0:DiseaseFree 16.3 -TCGA-BH-A0AY 0:LIVING 25.53 0:DiseaseFree 25.53 -TCGA-E2-A107 0:LIVING 25.07 1:Recurred/Progressed [Not Available] -TCGA-AO-A0JI 0:LIVING 38.5 0:DiseaseFree 38.5 -TCGA-E2-A10C 0:LIVING 28.02 0:DiseaseFree 28.02 -TCGA-E2-A10A 0:LIVING 11.56 1:Recurred/Progressed [Not Available] -TCGA-BH-A0C0 0:LIVING 41.72 0:DiseaseFree 41.72 -TCGA-E2-A109 0:LIVING 38.5 0:DiseaseFree 38.5 -TCGA-AO-A0JC 0:LIVING 50.82 0:DiseaseFree 50.82 -TCGA-BH-A0HW 0:LIVING 51.25 0:DiseaseFree 51.25 -TCGA-AO-A0JD 0:LIVING 59.56 0:DiseaseFree 59.56 -TCGA-AO-A0JM 0:LIVING 59.99 0:DiseaseFree 59.99 -TCGA-A2-A0CW 0:LIVING 57.49 0:DiseaseFree 57.49 -TCGA-A2-A0ER 0:LIVING 62.49 0:DiseaseFree 62.49 -TCGA-A2-A0CT 0:LIVING 62.98 0:DiseaseFree 62.98 -TCGA-AO-A12B 0:LIVING 77.5 0:DiseaseFree 77.5 -TCGA-A2-A04R 0:LIVING 77.67 0:DiseaseFree 77.67 -TCGA-B6-A0IM 0:LIVING 126.03 0:DiseaseFree 126.03 -TCGA-AO-A03P 0:LIVING 84.63 1:Recurred/Progressed [Not Available] -TCGA-A1-A0SM 0:LIVING 7.95 0:DiseaseFree 7.95 -TCGA-A8-A06N 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A06O 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A06Q 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A06R 0:LIVING 17.94 0:DiseaseFree 17.94 -TCGA-A8-A06Z 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A079 0:LIVING 9 0:DiseaseFree 9 -TCGA-A8-A07L 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-A8-A07S 0:LIVING 7.95 0:DiseaseFree 7.95 -TCGA-A8-A07W 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A07Z 0:LIVING 28.02 0:DiseaseFree 28.02 -TCGA-A8-A082 0:LIVING 18.04 0:DiseaseFree 18.04 -TCGA-A8-A084 0:LIVING 15.05 0:DiseaseFree 15.05 -TCGA-A8-A085 0:LIVING 36.93 0:DiseaseFree 36.93 -TCGA-A8-A08F 0:LIVING 18.04 0:DiseaseFree 18.04 -TCGA-A8-A08G 0:LIVING 19.91 0:DiseaseFree 19.91 -TCGA-A8-A08I 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A08P 0:LIVING 30.95 0:DiseaseFree 30.95 -TCGA-A8-A095 0:LIVING 41.92 0:DiseaseFree 41.92 -TCGA-A8-A096 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A097 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A09C 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A09D 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A09I 0:LIVING 33.05 0:DiseaseFree 33.05 -TCGA-A8-A09M 0:LIVING 15.01 0:DiseaseFree 15.01 -TCGA-A8-A09N 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A09Q 0:LIVING 25 0:DiseaseFree 25 -TCGA-A8-A09R 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-A8-A09W 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-A8-A09Z 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A0A9 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A0AB 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-AN-A03Y 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A041 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-AN-A049 0:LIVING 0.62 0:DiseaseFree 0.62 -TCGA-AN-A0AJ 0:LIVING 7.98 0:DiseaseFree 7.98 -TCGA-AN-A0AK 0:LIVING 7.33 0:DiseaseFree 7.33 -TCGA-AN-A0AM 0:LIVING 0.16 0:DiseaseFree 0.16 -TCGA-AN-A0AS 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0FF 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-AN-A0FK 0:LIVING 6.96 0:DiseaseFree 6.96 -TCGA-AN-A0FY 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XR 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XW 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-AR-A0TQ 0:LIVING 49.28 0:DiseaseFree 49.28 -TCGA-AR-A0TT 0:LIVING 55.16 0:DiseaseFree 55.16 -TCGA-AR-A0TV 0:LIVING 29.7 0:DiseaseFree 29.7 -TCGA-AR-A0TZ 0:LIVING 43.14 0:DiseaseFree 43.14 -TCGA-AR-A0U3 0:LIVING 74.35 0:DiseaseFree 74.35 -TCGA-AR-A1AV 0:LIVING 42.55 0:DiseaseFree 42.55 -TCGA-BH-A0AU 0:LIVING 24.51 0:DiseaseFree 24.51 -TCGA-BH-A0B5 0:LIVING 48.33 0:DiseaseFree 48.33 -TCGA-BH-A0BF 0:LIVING 25.66 0:DiseaseFree 25.66 -TCGA-BH-A0BZ 0:LIVING 49.02 0:DiseaseFree 49.02 -TCGA-BH-A0C3 0:LIVING 48.1 0:DiseaseFree 48.1 -TCGA-BH-A0C7 0:LIVING 42.87 0:DiseaseFree 42.87 -TCGA-BH-A0DD 0:LIVING 45.76 0:DiseaseFree 45.76 -TCGA-BH-A0W3 0:LIVING 5.91 0:DiseaseFree 5.91 -TCGA-BH-A18F 0:LIVING 8.8 0:DiseaseFree 8.8 -TCGA-C8-A12M 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12U 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12W 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12X 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HG 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HL 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-C8-A1HM 0:LIVING 0.2 0:DiseaseFree 0.2 -TCGA-C8-A1HN 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-E2-A14O 0:LIVING 38.5 0:DiseaseFree 38.5 -TCGA-E2-A14S 0:LIVING 27.4 0:DiseaseFree 27.4 -TCGA-E2-A14W 0:LIVING 27.37 0:DiseaseFree 27.37 -TCGA-E2-A155 0:LIVING 18.17 0:DiseaseFree 18.17 -TCGA-E2-A15A 0:LIVING 16.49 0:DiseaseFree 16.49 -TCGA-E2-A15K 0:LIVING 1.12 0:DiseaseFree 1.12 -TCGA-E2-A15L 0:LIVING 10.87 0:DiseaseFree 10.87 -TCGA-E2-A15M 0:LIVING 7.69 0:DiseaseFree 7.69 -TCGA-E2-A15S 0:LIVING 9 0:DiseaseFree 9 -TCGA-E2-A15T 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-AO-A03U 1:DECEASED 59 0:DiseaseFree 56.74 -TCGA-B6-A0IE 1:DECEASED 65.64 1:Recurred/Progressed [Not Available] -TCGA-A2-A0YK 0:LIVING 10.97 0:DiseaseFree 10.97 -TCGA-E2-A108 0:LIVING 4.07 0:DiseaseFree 4.07 -TCGA-AO-A0JB 0:LIVING 37.78 0:DiseaseFree 37.78 -TCGA-AO-A03R 0:LIVING 56.08 0:DiseaseFree 56.08 -TCGA-AO-A03T 0:LIVING 39 0:DiseaseFree 39 -TCGA-AR-A1AO 0:LIVING 43.5 0:DiseaseFree 43.5 -TCGA-A2-A0YT 1:DECEASED 23.75 0:DiseaseFree 21.98 -TCGA-AQ-A0Y5 1:DECEASED 5.29 0:DiseaseFree [Not Available] -TCGA-EW-A1P8 1:DECEASED 7.85 1:Recurred/Progressed [Not Available] -TCGA-E2-A1LK 1:DECEASED 8.74 1:Recurred/Progressed [Not Available] -TCGA-BH-A1EY 1:DECEASED 17.68 1:Recurred/Progressed [Not Available] -TCGA-BH-A1F8 1:DECEASED 24.61 1:Recurred/Progressed [Not Available] -TCGA-BH-A1F2 1:DECEASED 31.51 0:DiseaseFree [Not Available] -TCGA-BH-A1FD 1:DECEASED 33.12 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FH 1:DECEASED 36.89 1:Recurred/Progressed [Not Available] -TCGA-BH-A203 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-BH-A1FM 1:DECEASED 45.6 [Not Available] [Not Available] -TCGA-BH-A1EX 1:DECEASED 49.54 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FL 1:DECEASED 54.96 1:Recurred/Progressed [Not Available] -TCGA-BH-A208 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-GM-A2D9 1:DECEASED 59.53 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FJ 1:DECEASED 63.31 [Not Available] [Not Available] -TCGA-BH-A1EN 1:DECEASED 67.42 0:DiseaseFree [Not Available] -TCGA-BH-A1FN 1:DECEASED 72.01 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FU 1:DECEASED 72.01 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FE 1:DECEASED 74.68 1:Recurred/Progressed [Not Available] -TCGA-BH-A204 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-BH-A1F5 1:DECEASED 89.1 0:DiseaseFree [Not Available] -TCGA-AR-A256 1:DECEASED 93.76 [Not Available] [Not Available] -TCGA-BH-A1F6 1:DECEASED 97.41 [Not Available] [Not Available] -TCGA-BH-A1FC 1:DECEASED 114.03 0:DiseaseFree [Not Available] -TCGA-BH-A1FB 1:DECEASED 120.54 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FG 1:DECEASED 122.81 [Not Available] [Not Available] -TCGA-BH-A209 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-BH-A1FR 1:DECEASED 144.49 1:Recurred/Progressed [Not Available] -TCGA-AO-A1KS 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-A7-A13G 0:LIVING 6.83 0:DiseaseFree 6.83 -TCGA-D8-A1JS 0:LIVING 3.45 0:DiseaseFree 3.45 -TCGA-A7-A0DC 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-D8-A1JT 0:LIVING 4.04 0:DiseaseFree 4.04 -TCGA-A7-A26E 0:LIVING 13.83 0:DiseaseFree 13.83 -TCGA-D8-A1JH 0:LIVING 9.33 0:DiseaseFree 9.33 -TCGA-D8-A1JU 0:LIVING 3.48 0:DiseaseFree 3.48 -TCGA-AO-A1KO 0:LIVING 14.72 0:DiseaseFree 14.72 -TCGA-AO-A1KT 0:LIVING 17.77 0:DiseaseFree 17.77 -TCGA-AO-A0J5 0:LIVING 24.15 1:Recurred/Progressed [Not Available] -TCGA-B6-A1KC 0:LIVING 43.56 0:DiseaseFree 43.56 -TCGA-AO-A1KQ 0:LIVING 49.9 0:DiseaseFree 49.9 -TCGA-B6-A1KI 0:LIVING 48.06 0:DiseaseFree 48.06 -TCGA-AO-A1KP 0:LIVING 82.56 0:DiseaseFree 82.56 -TCGA-B6-A1KF 0:LIVING 101.45 0:DiseaseFree 101.45 -TCGA-B6-A1KN 0:LIVING 109.4 0:DiseaseFree 109.4 -TCGA-D8-A1XO 0:LIVING 7.95 0:DiseaseFree 7.95 -TCGA-D8-A1XT 0:LIVING 6.34 0:DiseaseFree 6.34 -TCGA-A1-A0SP 0:LIVING 19.15 0:DiseaseFree 19.15 -TCGA-D8-A1J8 0:LIVING 8.41 0:DiseaseFree 8.41 -TCGA-D8-A1JF 0:LIVING 3.15 0:DiseaseFree 3.15 -TCGA-D8-A1JG 0:LIVING 6.14 0:DiseaseFree 6.14 -TCGA-D8-A1XS 0:LIVING 0.59 0:DiseaseFree 0.59 -TCGA-A1-A0SB 0:LIVING 8.51 0:DiseaseFree 8.51 -TCGA-A1-A0SF 0:LIVING 48.06 0:DiseaseFree 48.06 -TCGA-A1-A0SG 0:LIVING 14.23 0:DiseaseFree 14.23 -TCGA-A1-A0SI 0:LIVING 20.83 0:DiseaseFree 20.83 -TCGA-A1-A0SN 0:LIVING 39.29 0:DiseaseFree 39.29 -TCGA-A1-A0SQ 0:LIVING 18.17 0:DiseaseFree 18.17 -TCGA-A2-A1FV 0:LIVING 15.11 0:DiseaseFree 15.11 -TCGA-A2-A1FW 0:LIVING 7.26 0:DiseaseFree 7.26 -TCGA-A2-A1FX 0:LIVING 30.72 0:DiseaseFree 30.72 -TCGA-A2-A1FZ 0:LIVING 13.44 0:DiseaseFree 13.44 -TCGA-A2-A1G0 0:LIVING 12.48 0:DiseaseFree 12.48 -TCGA-A2-A1G1 0:LIVING 12.19 0:DiseaseFree 12.19 -TCGA-A2-A1G4 0:LIVING 12.22 0:DiseaseFree 12.22 -TCGA-A2-A1G6 0:LIVING 4.34 0:DiseaseFree 4.34 -TCGA-A2-A259 0:LIVING 42.22 0:DiseaseFree 42.22 -TCGA-A2-A25A 0:LIVING 97.51 0:DiseaseFree 97.51 -TCGA-A2-A25B 0:LIVING 8.48 0:DiseaseFree 8.48 -TCGA-A2-A25C 0:LIVING 9.36 0:DiseaseFree 9.36 -TCGA-A2-A25D 0:LIVING 7.98 0:DiseaseFree 7.98 -TCGA-A2-A25E 0:LIVING 82.49 0:DiseaseFree 82.49 -TCGA-A2-A25F 0:LIVING 3.71 0:DiseaseFree 3.71 -TCGA-A7-A26F 0:LIVING 8.44 0:DiseaseFree 8.44 -TCGA-A7-A26G 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-A7-A26H 0:LIVING 2.1 0:DiseaseFree 2.1 -TCGA-A7-A26I 0:LIVING 4.01 0:DiseaseFree 4.01 -TCGA-A7-A26J 0:LIVING 2.2 1:Recurred/Progressed [Not Available] -TCGA-A8-A08S 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A09E 0:LIVING 30.95 0:DiseaseFree 30.95 -TCGA-A8-A09K 0:LIVING 29.93 0:DiseaseFree 29.93 -TEST-A23C 0:LIVING 0.95 0:DiseaseFree 0.95 -TEST-A23E 0:LIVING 2.37 0:DiseaseFree 2.37 -TEST-A23H 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-AO-A1KR 0:LIVING 70.31 0:DiseaseFree 70.31 -TCGA-AQ-A1H2 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-AQ-A1H3 0:LIVING 4.53 0:DiseaseFree 4.53 -TCGA-AR-A24H 0:LIVING 109.5 0:DiseaseFree 109.5 -TCGA-AR-A24K 0:LIVING 50.86 0:DiseaseFree 50.86 -TCGA-AR-A24L 0:LIVING 72.97 0:DiseaseFree 72.97 -TCGA-AR-A24M 0:LIVING 65.38 0:DiseaseFree 65.38 -TCGA-AR-A24N 0:LIVING 68.14 0:DiseaseFree 68.14 -TCGA-AR-A24O 0:LIVING 65.61 0:DiseaseFree 65.61 -TCGA-AR-A24P 0:LIVING 0.85 0:DiseaseFree 0.85 -TCGA-AR-A24Q 0:LIVING 65.97 0:DiseaseFree 65.97 -TCGA-AR-A24R 0:LIVING 57.33 0:DiseaseFree 57.33 -TCGA-AR-A24S 0:LIVING 62.03 0:DiseaseFree 62.03 -TCGA-AR-A24T 0:LIVING 53.22 0:DiseaseFree 53.22 -TCGA-AR-A24U 0:LIVING 53.32 0:DiseaseFree 53.32 -TCGA-AR-A24V 0:LIVING 54.14 0:DiseaseFree 54.14 -TCGA-AR-A24X 0:LIVING 48.13 0:DiseaseFree 48.13 -TCGA-AR-A24Z 0:LIVING 51.71 0:DiseaseFree 51.71 -TCGA-AR-A250 0:LIVING 56.08 0:DiseaseFree 56.08 -TCGA-AR-A251 0:LIVING 45.11 0:DiseaseFree 45.11 -TCGA-AR-A252 0:LIVING 40.61 0:DiseaseFree 40.61 -TCGA-AR-A254 0:LIVING 39.82 0:DiseaseFree 39.82 -TCGA-AR-A255 0:LIVING 34.76 0:DiseaseFree 34.76 -TCGA-BH-A0B2 0:LIVING 40.8 0:DiseaseFree 40.8 -TCGA-BH-A0DV 0:LIVING 45.14 0:DiseaseFree 45.14 -TCGA-BH-A201 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-BH-A202 0:LIVING 0.72 0:DiseaseFree 0.72 -TCGA-BH-A28Q [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-C8-A1HE 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HJ 0:LIVING 0.16 0:DiseaseFree 0.16 -TCGA-C8-A1HK 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A1HO 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A26V 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-C8-A26W 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A26X 0:LIVING 0.36 0:DiseaseFree 0.36 -TCGA-C8-A26Y 0:LIVING 0.43 0:DiseaseFree 0.43 -TCGA-C8-A26Z 0:LIVING 0.13 0:DiseaseFree 0.13 -TCGA-C8-A273 0:LIVING 0.2 0:DiseaseFree 0.2 -TCGA-C8-A274 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A275 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A278 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A27A 0:LIVING 12.19 0:DiseaseFree 12.19 -TCGA-C8-A27B 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-D8-A146 0:LIVING 11.3 0:DiseaseFree 11.3 -TCGA-D8-A1J9 0:LIVING 8.15 0:DiseaseFree 8.15 -TCGA-D8-A1JA 0:LIVING 0.59 0:DiseaseFree 0.59 -TCGA-D8-A1JB 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A1JC 0:LIVING 5.85 0:DiseaseFree 5.85 -TCGA-D8-A1JD 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-D8-A1JE 0:LIVING 1.87 0:DiseaseFree 1.87 -TCGA-D8-A1JI 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-D8-A1JJ 0:LIVING 9 0:DiseaseFree 9 -TCGA-D8-A1JK 0:LIVING 3.58 0:DiseaseFree 3.58 -TCGA-D8-A1JL 0:LIVING 8.71 0:DiseaseFree 8.71 -TCGA-D8-A1JM 0:LIVING 7.82 0:DiseaseFree 7.82 -TCGA-D8-A1JN 0:LIVING 7.13 0:DiseaseFree 7.13 -TCGA-D8-A1JP 0:LIVING 5.49 0:DiseaseFree 5.49 -TCGA-D8-A1X5 0:LIVING 5.62 0:DiseaseFree 5.62 -TCGA-D8-A1X6 0:LIVING 7.75 0:DiseaseFree 7.75 -TCGA-D8-A1X7 0:LIVING 2.79 0:DiseaseFree 2.79 -TCGA-D8-A1X8 0:LIVING 8.94 0:DiseaseFree 8.94 -TCGA-D8-A1X9 0:LIVING 12.48 0:DiseaseFree 12.48 -TCGA-D8-A1XA 0:LIVING 9 0:DiseaseFree 9 -TCGA-D8-A1XB 0:LIVING 6.6 0:DiseaseFree 6.6 -TCGA-D8-A1XC 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-D8-A1XD 0:LIVING 5.09 0:DiseaseFree 5.09 -TCGA-D8-A1XF 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-D8-A1XG 0:LIVING 6.44 0:DiseaseFree 6.44 -TCGA-D8-A1XJ 0:LIVING 11.56 0:DiseaseFree 11.56 -TCGA-D8-A1XK 0:LIVING 10.71 0:DiseaseFree 10.71 -TCGA-D8-A1XL 0:LIVING 10.48 0:DiseaseFree 10.48 -TCGA-D8-A1XM 0:LIVING 7.16 0:DiseaseFree 7.16 -TCGA-D8-A1XQ 0:LIVING 5.82 0:DiseaseFree 5.82 -TCGA-D8-A1XR 0:LIVING 5.52 0:DiseaseFree 5.52 -TCGA-D8-A1XU 0:LIVING 4.9 0:DiseaseFree 4.9 -TCGA-D8-A1XV 0:LIVING 4.8 0:DiseaseFree 4.8 -TCGA-D8-A1XW 0:LIVING 3.84 0:DiseaseFree 3.84 -TCGA-D8-A1XY 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-D8-A1XZ 0:LIVING 3.94 0:DiseaseFree 3.94 -TCGA-D8-A1Y0 0:LIVING 5.45 0:DiseaseFree 5.45 -TCGA-D8-A1Y1 0:LIVING 3.78 0:DiseaseFree 3.78 -TCGA-D8-A1Y2 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-D8-A1Y3 0:LIVING 4.07 0:DiseaseFree 4.07 -TCGA-D8-A27E 0:LIVING 5.98 0:DiseaseFree 5.98 -TCGA-D8-A27F 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-D8-A27G 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-D8-A27H 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-D8-A27I 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-D8-A27K 0:LIVING 3.88 0:DiseaseFree 3.88 -TCGA-D8-A27L 0:LIVING 4.11 0:DiseaseFree 4.11 -TCGA-D8-A27M 0:LIVING 4.73 0:DiseaseFree 4.73 -TCGA-D8-A27N 0:LIVING 4.76 0:DiseaseFree 4.76 -TCGA-D8-A27P 0:LIVING 0.72 0:DiseaseFree 0.72 -TCGA-D8-A27R 0:LIVING 2.96 0:DiseaseFree 2.96 -TCGA-D8-A27T 0:LIVING 4.44 0:DiseaseFree 4.44 -TCGA-D8-A27V 0:LIVING 2.4 0:DiseaseFree 2.4 -TCGA-D8-A27W 0:LIVING 0.49 0:DiseaseFree 0.49 -TCGA-E2-A1IE 0:LIVING 32.29 0:DiseaseFree 32.29 -TCGA-E2-A1IF 0:LIVING 31.41 0:DiseaseFree 31.41 -TCGA-E2-A1IG 0:LIVING 24.8 0:DiseaseFree 24.8 -TCGA-E2-A1IH 0:LIVING 21.62 0:DiseaseFree 21.62 -TCGA-E2-A1II 0:LIVING 27.93 0:DiseaseFree 27.93 -TCGA-E2-A1IJ 0:LIVING 23.82 0:DiseaseFree 23.82 -TCGA-E2-A1IK 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-E2-A1IL 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E2-A1IN 0:LIVING 12.88 0:DiseaseFree 12.88 -TCGA-E2-A1IO 0:LIVING 14.72 0:DiseaseFree 14.72 -TCGA-E2-A1IP 0:LIVING 14.03 0:DiseaseFree 14.03 -TCGA-E2-A1IU 0:LIVING 4.17 0:DiseaseFree 4.17 -TCGA-E2-A1L6 0:LIVING 43.1 0:DiseaseFree 43.1 -TCGA-E2-A1L7 0:LIVING 20.8 0:DiseaseFree 20.8 -TCGA-E2-A1L8 0:LIVING 33.35 0:DiseaseFree 33.35 -TCGA-E2-A1L9 0:LIVING 12.75 0:DiseaseFree 12.75 -TCGA-E2-A1LA 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-E2-A1LB 0:LIVING 31.93 0:DiseaseFree 31.93 -TCGA-E2-A1LG 0:LIVING 11.5 0:DiseaseFree 11.5 -TCGA-E2-A1LH 0:LIVING 94.45 0:DiseaseFree 94.45 -TCGA-E2-A1LI 0:LIVING 90.35 0:DiseaseFree 90.35 -TCGA-E2-A1LL 0:LIVING 33.31 0:DiseaseFree 33.31 -TCGA-E2-A1LS 0:LIVING 7.85 0:DiseaseFree 7.85 -TCGA-E9-A1N3 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N4 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N5 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N6 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N8 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N9 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NA 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NC 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1ND 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NE 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NF 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NG 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NH 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NI 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1QZ 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R0 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R2 0:LIVING 0.62 0:DiseaseFree 0.62 -TCGA-E9-A1R3 0:LIVING 2.1 0:DiseaseFree 2.1 -TCGA-E9-A1R4 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1R5 0:LIVING 1.38 0:DiseaseFree 1.38 -TCGA-E9-A1R6 0:LIVING 2.76 0:DiseaseFree 2.76 -TCGA-E9-A1R7 0:LIVING 1.12 0:DiseaseFree 1.12 -TCGA-E9-A1RA 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1RB 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A1RC 0:LIVING 40.34 0:DiseaseFree 40.34 -TCGA-E9-A1RD 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A1RE 0:LIVING 1.54 0:DiseaseFree 1.54 -TCGA-E9-A1RF 0:LIVING 1.25 0:DiseaseFree 1.25 -TCGA-E9-A1RG 0:LIVING 1.15 0:DiseaseFree 1.15 -TCGA-E9-A1RH 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E9-A1RI 0:LIVING 1.58 0:DiseaseFree 1.58 -TCGA-E9-A226 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-E9-A227 0:LIVING 0.79 0:DiseaseFree 0.79 -TCGA-E9-A228 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A229 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22A 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22B 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22D 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22E 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22G 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22H 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A243 0:LIVING 1.41 0:DiseaseFree 1.41 -TCGA-E9-A244 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A245 0:LIVING 0.82 0:DiseaseFree 0.82 -TCGA-E9-A247 0:LIVING 0.39 0:DiseaseFree 0.39 -TCGA-E9-A248 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A249 0:LIVING 0.92 0:DiseaseFree 0.92 -TCGA-E9-A24A 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-EW-A1IW 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1IX 0:LIVING 35.55 0:DiseaseFree 35.55 -TCGA-EW-A1IY 0:LIVING 8.48 0:DiseaseFree 8.48 -TCGA-EW-A1IZ 0:LIVING 8.54 0:DiseaseFree 8.54 -TCGA-EW-A1J1 0:LIVING 9.26 0:DiseaseFree 9.26 -TCGA-EW-A1J2 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1J3 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1J5 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-EW-A1J6 0:LIVING 19.55 0:DiseaseFree 19.55 -TCGA-EW-A1OV 0:LIVING 17.15 0:DiseaseFree 17.15 -TCGA-EW-A1OW 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-EW-A1OX 0:LIVING 18.46 0:DiseaseFree 18.46 -TCGA-EW-A1OY 0:LIVING 19.48 0:DiseaseFree 19.48 -TCGA-EW-A1OZ 0:LIVING 30.91 0:DiseaseFree 30.91 -TCGA-EW-A1P0 0:LIVING 36.83 1:Recurred/Progressed [Not Available] -TCGA-EW-A1P1 0:LIVING 30.19 1:Recurred/Progressed [Not Available] -TCGA-EW-A1P3 0:LIVING 32.43 0:DiseaseFree 32.43 -TCGA-EW-A1P4 0:LIVING 16.46 0:DiseaseFree 16.46 -TCGA-EW-A1P5 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-EW-A1P6 0:LIVING 10.25 0:DiseaseFree 10.25 -TCGA-EW-A1P7 0:LIVING 20.86 0:DiseaseFree 20.86 -TCGA-EW-A1PA 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-EW-A1PB 0:LIVING 19.97 0:DiseaseFree 19.97 -TCGA-EW-A1PD 0:LIVING 5.72 0:DiseaseFree 5.72 -TCGA-EW-A1PE 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PF 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PG 0:LIVING 28.75 0:DiseaseFree 28.75 -TCGA-EW-A1PH 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A2FS [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-EW-A2FV [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-EW-A2FW [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-GM-A2DA 0:LIVING 194.13 1:Recurred/Progressed [Not Available] -TCGA-GM-A2DB 0:LIVING 53.06 0:DiseaseFree 53.06 -TCGA-GM-A2DC 0:LIVING 53.49 0:DiseaseFree 53.49 -TCGA-GM-A2DD 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-GM-A2DF 0:LIVING 42.68 0:DiseaseFree 42.68 -TCGA-GM-A2DH 0:LIVING 42.25 0:DiseaseFree 42.25 -TCGA-GM-A2DI 0:LIVING 61.86 0:DiseaseFree 61.86 -TCGA-GM-A2DK 0:LIVING 62.29 0:DiseaseFree 62.29 -TCGA-GM-A2DL 0:LIVING 90.74 0:DiseaseFree 90.74 -TCGA-GM-A2DM 0:LIVING 76.58 0:DiseaseFree 76.58 -TCGA-GM-A2DN 0:LIVING 77.27 0:DiseaseFree 77.27 -TCGA-GM-A2DO 0:LIVING 53.29 0:DiseaseFree 53.29 -TCGA-AR-A24W [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2B8 [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2FF [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2FB [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2FG [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-GI-A2C8 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-E9-A295 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-A2-A0T2 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_1 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_2 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_3 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_4 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_5 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_6 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_7 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_8 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_9 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_10 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_11 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_12 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_13 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_14 [Not Available] [Not Available] [Not Available] [Not Available] -TEST_PATIENT_15 [Not Available] [Not Available] [Not Available] [Not Available] diff --git a/core/src/test/scripts/test_data/study_oncokb_import/data_clinical_samples.txt b/core/src/test/scripts/test_data/study_oncokb_import/data_clinical_samples.txt deleted file mode 100644 index 7550e963d09..00000000000 --- a/core/src/test/scripts/test_data/study_oncokb_import/data_clinical_samples.txt +++ /dev/null @@ -1,846 +0,0 @@ -#Patient Identifier Sample Identifier Subtype -#Patient identifier Sample identifier Subtype description -#STRING STRING STRING -#1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like -TCGA-A7-A13E TCGA-A7-A13E-01 -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like -TCGA-D8-A142 TCGA-D8-A142-01 basal-like -TCGA-D8-A143 TCGA-D8-A143-01 NA -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like -TCGA-A2-A04U TCGA-A2-A04U-01 NA -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like -TCGA-A2-A04T TCGA-A2-A04T-01 NA -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like -TCGA-AO-A128 TCGA-AO-A128-01 NA -TCGA-AO-A129 TCGA-AO-A129-01 basal-like -TCGA-AO-A124 TCGA-AO-A124-01 basal-like -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like -TCGA-BH-A18G TCGA-BH-A18G-01 NA -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like -TCGA-C8-A131 TCGA-C8-A131-01 basal-like -TCGA-C8-A134 TCGA-C8-A134-01 basal-like -TCGA-D8-A147 TCGA-D8-A147-01 basal-like -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like -TCGA-E2-A150 TCGA-E2-A150-01 basal-like -TCGA-E2-A158 TCGA-E2-A158-01 basal-like -TCGA-E2-A159 TCGA-E2-A159-01 basal-like -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A -TCGA-A7-A0CD TCGA-A7-A0CD-01 Luminal A -TCGA-D8-A145 TCGA-D8-A145-01 Luminal A -TCGA-BH-A0HP TCGA-BH-A0HP-01 Luminal A -TCGA-BH-A0DK TCGA-BH-A0DK-01 Luminal A -TCGA-BH-A0E2 TCGA-BH-A0E2-01 Luminal A -TCGA-A2-A0YI TCGA-A2-A0YI-01 Luminal A -TCGA-A2-A0YL TCGA-A2-A0YL-01 Luminal A -TCGA-AO-A0JG TCGA-AO-A0JG-01 Luminal A -TCGA-A2-A0YF TCGA-A2-A0YF-01 Luminal A -TCGA-BH-A0DP TCGA-BH-A0DP-01 Luminal A -TCGA-BH-A0E1 TCGA-BH-A0E1-01 Luminal A -TCGA-A2-A0T5 TCGA-A2-A0T5-01 Luminal A -TCGA-A2-A0T6 TCGA-A2-A0T6-01 Luminal A -TCGA-BH-A0HI TCGA-BH-A0HI-01 Luminal A -TCGA-A2-A0T7 TCGA-A2-A0T7-01 Luminal A -TCGA-BH-A0BJ TCGA-BH-A0BJ-01 Luminal A -TCGA-BH-A0H7 TCGA-BH-A0H7-01 Luminal A -TCGA-BH-A0HF TCGA-BH-A0HF-01 Luminal A -TCGA-BH-A0EB TCGA-BH-A0EB-01 Luminal A -TCGA-BH-A0H6 TCGA-BH-A0H6-01 Luminal A -TCGA-A2-A0YD TCGA-A2-A0YD-01 Luminal A -TCGA-BH-A0HB TCGA-BH-A0HB-01 Luminal A -TCGA-BH-A0HX TCGA-BH-A0HX-01 Luminal A -TCGA-AO-A12H TCGA-AO-A12H-01 Luminal A -TCGA-E2-A10E TCGA-E2-A10E-01 Luminal A -TCGA-A2-A0D3 TCGA-A2-A0D3-01 Luminal A -TCGA-E2-A10F TCGA-E2-A10F-01 Luminal A -TCGA-AO-A03V TCGA-AO-A03V-01 Luminal A -TCGA-A2-A0EW TCGA-A2-A0EW-01 Luminal A -TCGA-BH-A0GY TCGA-BH-A0GY-01 Luminal A -TCGA-A2-A0EV TCGA-A2-A0EV-01 Luminal A -TCGA-BH-A0BC TCGA-BH-A0BC-01 Luminal A -TCGA-A2-A0YC TCGA-A2-A0YC-01 Luminal A -TCGA-A2-A0EU TCGA-A2-A0EU-01 Luminal A -TCGA-A2-A0ET TCGA-A2-A0ET-01 Luminal A -TCGA-A2-A04Y TCGA-A2-A04Y-01 Luminal A -TCGA-BH-A0HQ TCGA-BH-A0HQ-01 Luminal A -TCGA-A2-A0ES TCGA-A2-A0ES-01 Luminal A -TCGA-BH-A0BA TCGA-BH-A0BA-01 Luminal A -TCGA-E2-A10B TCGA-E2-A10B-01 Luminal A -TCGA-BH-A0B1 TCGA-BH-A0B1-01 Luminal A -TCGA-BH-A0DH TCGA-BH-A0DH-01 Luminal A -TCGA-BH-A0B4 TCGA-BH-A0B4-01 Luminal A -TCGA-BH-A0H9 TCGA-BH-A0H9-01 Luminal A -TCGA-AO-A0J9 TCGA-AO-A0J9-01 Luminal A -TCGA-AO-A12G TCGA-AO-A12G-01 Luminal A -TCGA-A2-A0SY TCGA-A2-A0SY-01 Luminal A -TCGA-BH-A0E7 TCGA-BH-A0E7-01 Luminal A -TCGA-AO-A03M TCGA-AO-A03M-01 Luminal A -TCGA-BH-A0BV TCGA-BH-A0BV-01 Luminal A -TCGA-BH-A0B8 TCGA-BH-A0B8-01 Luminal A -TCGA-A2-A0CZ TCGA-A2-A0CZ-01 Luminal A -TCGA-A2-A0SU TCGA-A2-A0SU-01 Luminal A -TCGA-AO-A12E TCGA-AO-A12E-01 Luminal A -TCGA-E2-A106 TCGA-E2-A106-01 Luminal A -TCGA-A2-A0CV TCGA-A2-A0CV-01 Luminal A -TCGA-AO-A12C TCGA-AO-A12C-01 Luminal A -TCGA-B6-A0RG TCGA-B6-A0RG-01 Luminal A -TCGA-A2-A0CS TCGA-A2-A0CS-01 Luminal A -TCGA-A2-A0EO TCGA-A2-A0EO-01 Luminal A -TCGA-A2-A0CQ TCGA-A2-A0CQ-01 Luminal A -TCGA-A2-A0EN TCGA-A2-A0EN-01 Luminal A -TCGA-AO-A12A TCGA-AO-A12A-01 Luminal A -TCGA-A2-A0CP TCGA-A2-A0CP-01 Luminal A -TCGA-AO-A126 TCGA-AO-A126-01 Luminal A -TCGA-AO-A125 TCGA-AO-A125-01 Luminal A -TCGA-A2-A0EM TCGA-A2-A0EM-01 Luminal A -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A -TCGA-AQ-A04L TCGA-AQ-A04L-01 Luminal A -TCGA-B6-A0IO TCGA-B6-A0IO-01 Luminal A -TCGA-B6-A0IP TCGA-B6-A0IP-01 Luminal A -TCGA-B6-A0WZ TCGA-B6-A0WZ-01 Luminal A -TCGA-B6-A0I5 TCGA-B6-A0I5-01 Luminal A -TCGA-B6-A0RV TCGA-B6-A0RV-01 Luminal A -TCGA-B6-A0RO TCGA-B6-A0RO-01 Luminal A -TCGA-B6-A0RN TCGA-B6-A0RN-01 Luminal A -TCGA-B6-A0WT TCGA-B6-A0WT-01 Luminal A -TCGA-B6-A0IA TCGA-B6-A0IA-01 Luminal A -TCGA-B6-A0RI TCGA-B6-A0RI-01 Luminal A -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A -TCGA-A2-A0EX TCGA-A2-A0EX-01 Luminal A -TCGA-AO-A0JJ TCGA-AO-A0JJ-01 Luminal A -TCGA-E2-A105 TCGA-E2-A105-01 Luminal A -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A -TCGA-A8-A06P TCGA-A8-A06P-01 Luminal A -TCGA-A8-A06T TCGA-A8-A06T-01 Luminal A -TCGA-A8-A06Y TCGA-A8-A06Y-01 Luminal A -TCGA-A8-A07E TCGA-A8-A07E-01 Luminal A -TCGA-A8-A07F TCGA-A8-A07F-01 Luminal A -TCGA-A8-A07G TCGA-A8-A07G-01 Luminal A -TCGA-A8-A07J TCGA-A8-A07J-01 Luminal A -TCGA-A8-A07P TCGA-A8-A07P-01 Luminal A -TCGA-A8-A083 TCGA-A8-A083-01 Luminal A -TCGA-A8-A086 TCGA-A8-A086-01 Luminal A -TCGA-A8-A08A TCGA-A8-A08A-01 Luminal A -TCGA-A8-A08C TCGA-A8-A08C-01 Luminal A -TCGA-A8-A08O TCGA-A8-A08O-01 Luminal A -TCGA-A8-A08T TCGA-A8-A08T-01 Luminal A -TCGA-A8-A08Z TCGA-A8-A08Z-01 Luminal A -TCGA-A8-A090 TCGA-A8-A090-01 Luminal A -TCGA-A8-A091 TCGA-A8-A091-01 Luminal A -TCGA-A8-A093 TCGA-A8-A093-01 Luminal A -TCGA-A8-A099 TCGA-A8-A099-01 Luminal A -TCGA-A8-A09A TCGA-A8-A09A-01 Luminal A -TCGA-A8-A09B TCGA-A8-A09B-01 Luminal A -TCGA-A8-A09T TCGA-A8-A09T-01 Luminal A -TCGA-A8-A09V TCGA-A8-A09V-01 Luminal A -TCGA-A8-A0A1 TCGA-A8-A0A1-01 Luminal A -TCGA-A8-A0A2 TCGA-A8-A0A2-01 Luminal A -TCGA-A8-A0A4 TCGA-A8-A0A4-01 Luminal A -TCGA-A8-A0A6 TCGA-A8-A0A6-01 Luminal A -TCGA-A8-A0AD TCGA-A8-A0AD-01 Luminal A -TCGA-AN-A03X TCGA-AN-A03X-01 Luminal A -TCGA-AN-A046 TCGA-AN-A046-01 Luminal A -TCGA-AN-A04A TCGA-AN-A04A-01 Luminal A -TCGA-AN-A0FD TCGA-AN-A0FD-01 Luminal A -TCGA-AN-A0FN TCGA-AN-A0FN-01 Luminal A -TCGA-AN-A0FS TCGA-AN-A0FS-01 Luminal A -TCGA-AN-A0FT TCGA-AN-A0FT-01 Luminal A -TCGA-AN-A0FW TCGA-AN-A0FW-01 Luminal A -TCGA-AN-A0FZ TCGA-AN-A0FZ-01 Luminal A -TCGA-AN-A0XL TCGA-AN-A0XL-01 Luminal A -TCGA-AN-A0XN TCGA-AN-A0XN-01 Luminal A -TCGA-AN-A0XO TCGA-AN-A0XO-01 Luminal A -TCGA-AN-A0XP TCGA-AN-A0XP-01 Luminal A -TCGA-AN-A0XS TCGA-AN-A0XS-01 Luminal A -TCGA-AN-A0XT TCGA-AN-A0XT-01 Luminal A -TCGA-AN-A0XV TCGA-AN-A0XV-01 Luminal A -TCGA-AR-A0TW TCGA-AR-A0TW-01 Luminal A -TCGA-AR-A1AK TCGA-AR-A1AK-01 Luminal A -TCGA-AR-A1AL TCGA-AR-A1AL-01 Luminal A -TCGA-AR-A1AN TCGA-AR-A1AN-01 Luminal A -TCGA-AR-A1AP TCGA-AR-A1AP-01 Luminal A -TCGA-AR-A1AS TCGA-AR-A1AS-01 Luminal A -TCGA-AR-A1AU TCGA-AR-A1AU-01 Luminal A -TCGA-AR-A1AW TCGA-AR-A1AW-01 Luminal A -TCGA-AR-A1AX TCGA-AR-A1AX-01 Luminal A -TCGA-BH-A0AZ TCGA-BH-A0AZ-01 Luminal A -TCGA-BH-A0B0 TCGA-BH-A0B0-01 Luminal A -TCGA-BH-A0BM TCGA-BH-A0BM-01 Luminal A -TCGA-BH-A0BO TCGA-BH-A0BO-01 Luminal A -TCGA-BH-A0BP TCGA-BH-A0BP-01 Luminal A -TCGA-BH-A0BQ TCGA-BH-A0BQ-01 Luminal A -TCGA-BH-A0BR TCGA-BH-A0BR-01 Luminal A -TCGA-BH-A0BS TCGA-BH-A0BS-01 Luminal A -TCGA-BH-A0BT TCGA-BH-A0BT-01 Luminal A -TCGA-BH-A0C1 TCGA-BH-A0C1-01 Luminal A -TCGA-BH-A0DE TCGA-BH-A0DE-01 Luminal A -TCGA-BH-A0DG TCGA-BH-A0DG-01 Luminal A -TCGA-BH-A0DI TCGA-BH-A0DI-01 Luminal A -TCGA-BH-A0DO TCGA-BH-A0DO-01 Luminal A -TCGA-BH-A0DT TCGA-BH-A0DT-01 Luminal A -TCGA-BH-A0DX TCGA-BH-A0DX-01 Luminal A -TCGA-BH-A0E9 TCGA-BH-A0E9-01 Luminal A -TCGA-BH-A0EI TCGA-BH-A0EI-01 Luminal A -TCGA-BH-A0H3 TCGA-BH-A0H3-01 Luminal A -TCGA-BH-A0H5 TCGA-BH-A0H5-01 Luminal A -TCGA-BH-A0HA TCGA-BH-A0HA-01 Luminal A -TCGA-BH-A0W4 TCGA-BH-A0W4-01 Luminal A -TCGA-BH-A0W5 TCGA-BH-A0W5-01 Luminal A -TCGA-BH-A0W7 TCGA-BH-A0W7-01 Luminal A -TCGA-BH-A18H TCGA-BH-A18H-01 Luminal A -TCGA-BH-A18I TCGA-BH-A18I-01 Luminal A -TCGA-C8-A12N TCGA-C8-A12N-01 Luminal A -TCGA-C8-A12O TCGA-C8-A12O-01 Luminal A -TCGA-C8-A12Y TCGA-C8-A12Y-01 Luminal A -TCGA-C8-A132 TCGA-C8-A132-01 Luminal A -TCGA-C8-A133 TCGA-C8-A133-01 Luminal A -TCGA-C8-A1HI TCGA-C8-A1HI-01 Luminal A -TCGA-D8-A141 TCGA-D8-A141-01 Luminal A -TCGA-E2-A14Q TCGA-E2-A14Q-01 Luminal A -TCGA-E2-A14T TCGA-E2-A14T-01 Luminal A -TCGA-E2-A14Z TCGA-E2-A14Z-01 Luminal A -TCGA-E2-A153 TCGA-E2-A153-01 Luminal A -TCGA-E2-A154 TCGA-E2-A154-01 Luminal A -TCGA-E2-A156 TCGA-E2-A156-01 Luminal A -TCGA-E2-A15C TCGA-E2-A15C-01 Luminal A -TCGA-E2-A15D TCGA-E2-A15D-01 Luminal A -TCGA-E2-A15E TCGA-E2-A15E-01 Luminal A -TCGA-E2-A15F TCGA-E2-A15F-01 Luminal A -TCGA-E2-A15G TCGA-E2-A15G-01 Luminal A -TCGA-E2-A15H TCGA-E2-A15H-01 Luminal A -TCGA-E2-A15I TCGA-E2-A15I-01 Luminal A -TCGA-E2-A15J TCGA-E2-A15J-01 Luminal A -TCGA-E2-A15O TCGA-E2-A15O-01 Luminal A -TCGA-E2-A15P TCGA-E2-A15P-01 Luminal A -TCGA-E2-A15R TCGA-E2-A15R-01 Luminal A -TCGA-E2-A1B1 TCGA-E2-A1B1-01 Luminal A -TCGA-E2-A1B4 TCGA-E2-A1B4-01 Luminal A -TCGA-E2-A1B6 TCGA-E2-A1B6-01 Luminal A -TCGA-E2-A1BC TCGA-E2-A1BC-01 Luminal A -TCGA-E2-A1BD TCGA-E2-A1BD-01 Luminal A -TCGA-A2-A0SV TCGA-A2-A0SV-01 Luminal B -TCGA-AO-A03O TCGA-AO-A03O-01 Luminal B -TCGA-A2-A0SW TCGA-A2-A0SW-01 Luminal B -TCGA-B6-A0WW TCGA-B6-A0WW-01 Luminal B -TCGA-BH-A18J TCGA-BH-A18J-01 Luminal B -TCGA-BH-A18L TCGA-BH-A18L-01 Luminal B -TCGA-A8-A06X TCGA-A8-A06X-01 Luminal B -TCGA-B6-A0IC TCGA-B6-A0IC-01 Luminal B -TCGA-BH-A18U TCGA-BH-A18U-01 Luminal B -TCGA-BH-A1EW TCGA-BH-A1EW-01 Luminal B -TCGA-AR-A0TY TCGA-AR-A0TY-01 Luminal B -TCGA-B6-A0X5 TCGA-B6-A0X5-01 Luminal B -TCGA-B6-A0WV TCGA-B6-A0WV-01 Luminal B -TCGA-B6-A0RL TCGA-B6-A0RL-01 Luminal B -TCGA-AR-A0U2 TCGA-AR-A0U2-01 Luminal B -TCGA-B6-A0IB TCGA-B6-A0IB-01 Luminal B -TCGA-AO-A0J7 TCGA-AO-A0J7-01 Luminal B -TCGA-AO-A0J3 TCGA-AO-A0J3-01 Luminal B -TCGA-D8-A13Y TCGA-D8-A13Y-01 Luminal B -TCGA-A7-A13F TCGA-A7-A13F-01 Luminal B -TCGA-BH-A0HU TCGA-BH-A0HU-01 Luminal B -TCGA-D8-A140 TCGA-D8-A140-01 Luminal B -TCGA-A7-A0CJ TCGA-A7-A0CJ-01 Luminal B -TCGA-AQ-A04H TCGA-AQ-A04H-01 Luminal B -TCGA-BH-A0H0 TCGA-BH-A0H0-01 Luminal B -TCGA-BH-A0BD TCGA-BH-A0BD-01 Luminal B -TCGA-A2-A0T3 TCGA-A2-A0T3-01 Luminal B -TCGA-A2-A0T4 TCGA-A2-A0T4-01 Luminal B -TCGA-A2-A0YH TCGA-A2-A0YH-01 Luminal B -TCGA-A2-A0YG TCGA-A2-A0YG-01 Luminal B -TCGA-A2-A0EY TCGA-A2-A0EY-01 Luminal B -TCGA-A2-A0D4 TCGA-A2-A0D4-01 Luminal B -TCGA-BH-A0AY TCGA-BH-A0AY-01 Luminal B -TCGA-E2-A107 TCGA-E2-A107-01 Luminal B -TCGA-AO-A0JI TCGA-AO-A0JI-01 Luminal B -TCGA-E2-A10C TCGA-E2-A10C-01 Luminal B -TCGA-E2-A10A TCGA-E2-A10A-01 Luminal B -TCGA-BH-A0C0 TCGA-BH-A0C0-01 Luminal B -TCGA-E2-A109 TCGA-E2-A109-01 Luminal B -TCGA-AO-A0JC TCGA-AO-A0JC-01 Luminal B -TCGA-BH-A0HW TCGA-BH-A0HW-01 Luminal B -TCGA-AO-A0JD TCGA-AO-A0JD-01 Luminal B -TCGA-AO-A0JM TCGA-AO-A0JM-01 Luminal B -TCGA-A2-A0CW TCGA-A2-A0CW-01 Luminal B -TCGA-A2-A0ER TCGA-A2-A0ER-01 Luminal B -TCGA-A2-A0CT TCGA-A2-A0CT-01 Luminal B -TCGA-AO-A12B TCGA-AO-A12B-01 Luminal B -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B -TCGA-B6-A0IM TCGA-B6-A0IM-01 Luminal B -TCGA-AO-A03P TCGA-AO-A03P-01 Luminal B -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B -TCGA-A8-A06N TCGA-A8-A06N-01 Luminal B -TCGA-A8-A06O TCGA-A8-A06O-01 Luminal B -TCGA-A8-A06Q TCGA-A8-A06Q-01 Luminal B -TCGA-A8-A06R TCGA-A8-A06R-01 Luminal B -TCGA-A8-A06Z TCGA-A8-A06Z-01 Luminal B -TCGA-A8-A079 TCGA-A8-A079-01 Luminal B -TCGA-A8-A07L TCGA-A8-A07L-01 Luminal B -TCGA-A8-A07S TCGA-A8-A07S-01 Luminal B -TCGA-A8-A07W TCGA-A8-A07W-01 Luminal B -TCGA-A8-A07Z TCGA-A8-A07Z-01 Luminal B -TCGA-A8-A082 TCGA-A8-A082-01 Luminal B -TCGA-A8-A084 TCGA-A8-A084-01 Luminal B -TCGA-A8-A085 TCGA-A8-A085-01 Luminal B -TCGA-A8-A08F TCGA-A8-A08F-01 Luminal B -TCGA-A8-A08G TCGA-A8-A08G-01 Luminal B -TCGA-A8-A08I TCGA-A8-A08I-01 Luminal B -TCGA-A8-A08P TCGA-A8-A08P-01 Luminal B -TCGA-A8-A095 TCGA-A8-A095-01 Luminal B -TCGA-A8-A096 TCGA-A8-A096-01 Luminal B -TCGA-A8-A097 TCGA-A8-A097-01 Luminal B -TCGA-A8-A09C TCGA-A8-A09C-01 Luminal B -TCGA-A8-A09D TCGA-A8-A09D-01 Luminal B -TCGA-A8-A09I TCGA-A8-A09I-01 Luminal B -TCGA-A8-A09M TCGA-A8-A09M-01 Luminal B -TCGA-A8-A09N TCGA-A8-A09N-01 Luminal B -TCGA-A8-A09Q TCGA-A8-A09Q-01 Luminal B -TCGA-A8-A09R TCGA-A8-A09R-01 Luminal B -TCGA-A8-A09W TCGA-A8-A09W-01 Luminal B -TCGA-A8-A09Z TCGA-A8-A09Z-01 Luminal B -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B -TCGA-AO-A03U TCGA-AO-A03U-01 NA -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA -TCGA-AO-A03R TCGA-AO-A03R-01 NA -TCGA-AO-A03T TCGA-AO-A03T-01 NA -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA -TCGA-BH-A203 TCGA-BH-A203-01 NA -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA -TCGA-BH-A208 TCGA-BH-A208-01 NA -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA -TCGA-BH-A204 TCGA-BH-A204-01 NA -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA -TCGA-AR-A256 TCGA-AR-A256-01 NA -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA -TCGA-BH-A209 TCGA-BH-A209-01 NA -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA -TCGA-A7-A13G TCGA-A7-A13G-01 NA -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA -TCGA-A7-A26E TCGA-A7-A26E-01 NA -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA -TCGA-A2-A259 TCGA-A2-A259-01 NA -TCGA-A2-A25A TCGA-A2-A25A-01 NA -TCGA-A2-A25B TCGA-A2-A25B-01 NA -TCGA-A2-A25C TCGA-A2-A25C-01 NA -TCGA-A2-A25D TCGA-A2-A25D-01 NA -TCGA-A2-A25E TCGA-A2-A25E-01 NA -TCGA-A2-A25F TCGA-A2-A25F-01 NA -TCGA-A7-A26F TCGA-A7-A26F-01 NA -TCGA-A7-A26G TCGA-A7-A26G-01 NA -TCGA-A7-A26H TCGA-A7-A26H-01 NA -TCGA-A7-A26I TCGA-A7-A26I-01 NA -TCGA-A7-A26J TCGA-A7-A26J-01 NA -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B -TEST-A23C TEST-A23C-01 NA -TEST-A23E TEST-A23E-01 NA -TEST-A23H TEST-A23H-01 NA -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA -TCGA-AR-A24H TCGA-AR-A24H-01 NA -TCGA-AR-A24K TCGA-AR-A24K-01 NA -TCGA-AR-A24L TCGA-AR-A24L-01 NA -TCGA-AR-A24M TCGA-AR-A24M-01 NA -TCGA-AR-A24N TCGA-AR-A24N-01 NA -TCGA-AR-A24O TCGA-AR-A24O-01 NA -TCGA-AR-A24P TCGA-AR-A24P-01 NA -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA -TCGA-AR-A24R TCGA-AR-A24R-01 NA -TCGA-AR-A24S TCGA-AR-A24S-01 NA -TCGA-AR-A24T TCGA-AR-A24T-01 NA -TCGA-AR-A24U TCGA-AR-A24U-01 NA -TCGA-AR-A24V TCGA-AR-A24V-01 NA -TCGA-AR-A24X TCGA-AR-A24X-01 NA -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA -TCGA-AR-A250 TCGA-AR-A250-01 NA -TCGA-AR-A251 TCGA-AR-A251-01 NA -TCGA-AR-A252 TCGA-AR-A252-01 NA -TCGA-AR-A254 TCGA-AR-A254-01 NA -TCGA-AR-A255 TCGA-AR-A255-01 NA -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA -TCGA-BH-A201 TCGA-BH-A201-01 NA -TCGA-BH-A202 TCGA-BH-A202-01 NA -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA -TCGA-C8-A26V TCGA-C8-A26V-01 NA -TCGA-C8-A26W TCGA-C8-A26W-01 NA -TCGA-C8-A26X TCGA-C8-A26X-01 NA -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA -TCGA-C8-A273 TCGA-C8-A273-01 NA -TCGA-C8-A274 TCGA-C8-A274-01 NA -TCGA-C8-A275 TCGA-C8-A275-01 NA -TCGA-C8-A278 TCGA-C8-A278-01 NA -TCGA-C8-A27A TCGA-C8-A27A-01 NA -TCGA-C8-A27B TCGA-C8-A27B-01 NA -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA -TCGA-D8-A27E TCGA-D8-A27E-01 NA -TCGA-D8-A27F TCGA-D8-A27F-01 NA -TCGA-D8-A27G TCGA-D8-A27G-01 NA -TCGA-D8-A27H TCGA-D8-A27H-01 NA -TCGA-D8-A27I TCGA-D8-A27I-01 NA -TCGA-D8-A27K TCGA-D8-A27K-01 NA -TCGA-D8-A27L TCGA-D8-A27L-01 NA -TCGA-D8-A27M TCGA-D8-A27M-01 NA -TCGA-D8-A27N TCGA-D8-A27N-01 NA -TCGA-D8-A27P TCGA-D8-A27P-01 NA -TCGA-D8-A27R TCGA-D8-A27R-01 NA -TCGA-D8-A27T TCGA-D8-A27T-01 NA -TCGA-D8-A27V TCGA-D8-A27V-01 NA -TCGA-D8-A27W TCGA-D8-A27W-01 NA -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA -TCGA-E2-A1II TCGA-E2-A1II-01 NA -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA -TCGA-E9-A226 TCGA-E9-A226-01 NA -TCGA-E9-A227 TCGA-E9-A227-01 NA -TCGA-E9-A228 TCGA-E9-A228-01 NA -TCGA-E9-A229 TCGA-E9-A229-01 NA -TCGA-E9-A22A TCGA-E9-A22A-01 NA -TCGA-E9-A22B TCGA-E9-A22B-01 NA -TCGA-E9-A22D TCGA-E9-A22D-01 NA -TCGA-E9-A22E TCGA-E9-A22E-01 NA -TCGA-E9-A22G TCGA-E9-A22G-01 NA -TCGA-E9-A22H TCGA-E9-A22H-01 NA -TCGA-E9-A243 TCGA-E9-A243-01 NA -TCGA-E9-A244 TCGA-E9-A244-01 NA -TCGA-E9-A245 TCGA-E9-A245-01 NA -TCGA-E9-A247 TCGA-E9-A247-01 NA -TCGA-E9-A248 TCGA-E9-A248-01 NA -TCGA-E9-A249 TCGA-E9-A249-01 NA -TCGA-E9-A24A TCGA-E9-A24A-01 NA -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA -TCGA-AR-A24W TCGA-AR-A24W-01 NA -TEST-A2B8 TEST-A2B8-01 NA -TEST-A2FF TEST-A2FF-01 NA -TEST-A2FB TEST-A2FB-01 NA -TEST-A2FG TEST-A2FG-01 NA -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA -TCGA-E9-A295 TCGA-E9-A295-01 NA -TCGA-E2-A15E TCGA-E2-A15E-06 NA -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA -TEST_PATIENT_1 TEST_SAMPLE_1 NA -TEST_PATIENT_2 TEST_SAMPLE_2 NA -TEST_PATIENT_3 TEST_SAMPLE_3 NA -TEST_PATIENT_4 TEST_SAMPLE_4 NA -TEST_PATIENT_5 TEST_SAMPLE_5 NA -TEST_PATIENT_6 TEST_SAMPLE_6 NA -TEST_PATIENT_7 TEST_SAMPLE_7 NA -TEST_PATIENT_8 TEST_SAMPLE_8 NA -TEST_PATIENT_9 TEST_SAMPLE_9 NA -TEST_PATIENT_10 TEST_SAMPLE_10 NA -TEST_PATIENT_11 TEST_SAMPLE_11 NA -TEST_PATIENT_12 TEST_SAMPLE_12 NA -TEST_PATIENT_13 TEST_SAMPLE_13 NA -TEST_PATIENT_14 TEST_SAMPLE_14 NA -TEST_PATIENT_15 TEST_SAMPLE_15 NA diff --git a/core/src/test/scripts/test_data/study_oncokb_import/meta_clinical_samples.txt b/core/src/test/scripts/test_data/study_oncokb_import/meta_clinical_samples.txt deleted file mode 100644 index 7e4f674161b..00000000000 --- a/core/src/test/scripts/test_data/study_oncokb_import/meta_clinical_samples.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_clinical_samples.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/meta_clinical_patients.txt b/core/src/test/scripts/test_data/study_oncokb_update/meta_clinical_patients.txt deleted file mode 100644 index 5ff93a44ed1..00000000000 --- a/core/src/test/scripts/test_data/study_oncokb_update/meta_clinical_patients.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: CLINICAL -datatype: PATIENT_ATTRIBUTES -data_filename: data_clinical_patients.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/meta_clinical_samples.txt b/core/src/test/scripts/test_data/study_oncokb_update/meta_clinical_samples.txt deleted file mode 100644 index 7e4f674161b..00000000000 --- a/core/src/test/scripts/test_data/study_oncokb_update/meta_clinical_samples.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_clinical_samples.txt diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_data_cna_hg19.seg b/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_data_cna_hg19.seg deleted file mode 100644 index b94453050c5..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_data_cna_hg19.seg +++ /dev/null @@ -1,10 +0,0 @@ -ID chrom loc.start loc.end num.mark seg.mean -TCGA-A2-A04P-01 1 3218610 95674710 53225 0.0055 -TCGA-A2-A04P-01 1 95676511 95676518 2 -1.6636 -TCGA-A2-A04P-01 1 95680124 167057183 24886 0.0053 -TCGA-A2-A04P-01 1 167057495 167059336 3 -1.0999 -TCGA-A2-A04P-01 1 167059760 181602002 9213 -8e-04 -TCGA-A2-A04P-01 1 181603120 181609567 6 -1.2009 -TCGA-A2-A04P-01 1 181610685 201473647 12002 0.0055 -TCGA-A2-A04P-01 1 201474400 201474544 2 -1.4235 -TCGA-A2-A04P-01 1 201475220 247813706 29781 -4e-04 diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_meta_cna_hg19_seg.txt b/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_meta_cna_hg19_seg.txt deleted file mode 100644 index 646aae7a075..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_meta_cna_hg19_seg.txt +++ /dev/null @@ -1,6 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: SEG -reference_genome_id: hg19 -description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals) from TCGA. -data_filename: brca_tcga_data_cna_hg19.seg diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_pub.maf b/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_pub.maf deleted file mode 100644 index ad5ca140890..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/brca_tcga_pub.maf +++ /dev/null @@ -1,15 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All -OR11H1 genome.wustl.edu GRCh37 22 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A NA getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0.00 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - -TMEM247 genome.wustl.edu GRCh37 2 46707888 46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1,0 HIGH 1 deletion 1 1,0 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0.00 7 3 30.00 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - -ABLIM1 genome.wustl.edu GRCh37 10 116247760 116247760 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0.00 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C NA getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0.00 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0.00 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - -DTNB genome.wustl.edu GRCh37 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M NA getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0.00 9 9 50.00 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0.00 30 36 54.55 - - - 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene - - - -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; - ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1 deletion 2 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC ENSG00000113318 83 0 0.00 12 2 14.29 - - - 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC - - - -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1 1,1 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 50 0 0.00 36 4 10.00 - - - 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC - - - -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T NA getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 20 0 0.00 10 4 28.57 - - - 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC - - - -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC ENSG00000125879 57 0 0.00 36 9 20.00 - - - 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC - - - -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC ENSG00000078589 65 0 0.00 46 10 17.86 - - - X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC - - - -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R NA getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC ENSG00000103335 37 0 0.00 20 8 28.57 - - - 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC - - - diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/cancer_type.txt b/core/src/test/scripts/test_data/study_portal_mismatch/cancer_type.txt deleted file mode 100644 index 3ca8226bedf..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/cancer_type.txt +++ /dev/null @@ -1 +0,0 @@ -brca Invasive Breast Carcinoma PaleGreen Breast diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_cna.txt b/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_cna.txt deleted file mode 100644 index 1f485bbfd17..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_cna.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_cna -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_cnaseq.txt b/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_cnaseq.txt deleted file mode 100644 index 5009c8b15d1..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_cnaseq.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_cnaseq -case_list_name: Samples profiled for mutations and CNA -case_list_description: This is this case list that contains all samples that are profiled for mutations and CNA. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_custom.txt b/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_custom.txt deleted file mode 100644 index 839e0cba2d8..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_custom.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_custom -case_list_name: this is an optional custom case list -case_list_description: this is an optional custom case list -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TCGA-AC-A23C-01 TCGA-AC-A23E-01 TCGA-AC-A23H-01 TCGA-AC-A2B8-01 TCGA-AC-A2FB-01 TCGA-AC-A2FF-01 TCGA-AC-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 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TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_sequenced.txt b/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_sequenced.txt deleted file mode 100644 index 3f95de9e7ef..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/case_lists/cases_sequenced.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_sequenced -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SK-01 TCGA-A2-A04P-01 TCGA-A2-A0CM-01 TCGA-B6-A0WX-01 TCGA-BH-A0E0-01 TCGA-BH-A0HL-01 TCGA-BH-A18K-01 TCGA-BH-A18V-01 TCGA-BH-A1F0-01 TCGA-GI-A2C8-01 diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/data_CNA.txt b/core/src/test/scripts/test_data/study_portal_mismatch/data_CNA.txt deleted file mode 100644 index f5629339b28..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/data_CNA.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TCGA-AC-A23C-01 TCGA-AC-A23E-01 TCGA-AC-A23H-01 TCGA-AC-A2B8-01 TCGA-AC-A2FB-01 TCGA-AC-A2FF-01 TCGA-AC-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 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0 0 0 0 0 0 0 0 0 0 0 -1 0 -1 -1 0 0 -1 0 0 -1 0 0 -1 0 -1 0 0 0 0 1 0 0 -1 0 0 -1 1 0 0 -1 0 0 0 0 -1 0 1 0 0 0 0 0 0 0 0 -1 0 0 -1 -1 0 0 0 0 0 0 0 -1 -1 0 -1 -1 -1 1 0 0 2 0 0 0 0 0 1 0 -1 0 0 0 0 -1 0 0 0 1 -1 0 -1 0 1 0 0 -1 0 -1 1 0 0 0 -1 0 0 -1 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 -1 -1 0 0 0 0 0 0 0 -1 -1 -1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 -1 -1 diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/data_samples.txt b/core/src/test/scripts/test_data/study_portal_mismatch/data_samples.txt deleted file mode 100644 index af1e447989d..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/data_samples.txt +++ /dev/null @@ -1,831 +0,0 @@ -#Patient Identifier Sample Identifier Subtype -#Patient identifier Sample identifier Subtype description -#STRING STRING STRING -#1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like -TCGA-A7-A13E TCGA-A7-A13E-01 NA -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like -TCGA-D8-A142 TCGA-D8-A142-01 basal-like -TCGA-D8-A143 TCGA-D8-A143-01 NA -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like -TCGA-A2-A04U TCGA-A2-A04U-01 NA -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like -TCGA-A2-A04T TCGA-A2-A04T-01 NA -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like -TCGA-AO-A128 TCGA-AO-A128-01 NA -TCGA-AO-A129 TCGA-AO-A129-01 basal-like -TCGA-AO-A124 TCGA-AO-A124-01 basal-like -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like -TCGA-BH-A18G TCGA-BH-A18G-01 NA -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like -TCGA-C8-A131 TCGA-C8-A131-01 basal-like -TCGA-C8-A134 TCGA-C8-A134-01 basal-like -TCGA-D8-A147 TCGA-D8-A147-01 basal-like -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like -TCGA-E2-A150 TCGA-E2-A150-01 basal-like -TCGA-E2-A158 TCGA-E2-A158-01 basal-like -TCGA-E2-A159 TCGA-E2-A159-01 basal-like -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A -TCGA-A7-A0CD TCGA-A7-A0CD-01 Luminal A -TCGA-D8-A145 TCGA-D8-A145-01 Luminal A -TCGA-BH-A0HP TCGA-BH-A0HP-01 Luminal A -TCGA-BH-A0DK TCGA-BH-A0DK-01 Luminal A -TCGA-BH-A0E2 TCGA-BH-A0E2-01 Luminal A -TCGA-A2-A0YI TCGA-A2-A0YI-01 Luminal A -TCGA-A2-A0YL TCGA-A2-A0YL-01 Luminal A -TCGA-AO-A0JG TCGA-AO-A0JG-01 Luminal A -TCGA-A2-A0YF TCGA-A2-A0YF-01 Luminal A -TCGA-BH-A0DP TCGA-BH-A0DP-01 Luminal A -TCGA-BH-A0E1 TCGA-BH-A0E1-01 Luminal A -TCGA-A2-A0T5 TCGA-A2-A0T5-01 Luminal A -TCGA-A2-A0T6 TCGA-A2-A0T6-01 Luminal A -TCGA-BH-A0HI TCGA-BH-A0HI-01 Luminal A -TCGA-A2-A0T7 TCGA-A2-A0T7-01 Luminal A -TCGA-BH-A0BJ TCGA-BH-A0BJ-01 Luminal A -TCGA-BH-A0H7 TCGA-BH-A0H7-01 Luminal A -TCGA-BH-A0HF TCGA-BH-A0HF-01 Luminal A -TCGA-BH-A0EB TCGA-BH-A0EB-01 Luminal A -TCGA-BH-A0H6 TCGA-BH-A0H6-01 Luminal A -TCGA-A2-A0YD TCGA-A2-A0YD-01 Luminal A -TCGA-BH-A0HB TCGA-BH-A0HB-01 Luminal A -TCGA-BH-A0HX TCGA-BH-A0HX-01 Luminal A -TCGA-AO-A12H TCGA-AO-A12H-01 Luminal A -TCGA-E2-A10E TCGA-E2-A10E-01 Luminal A -TCGA-A2-A0D3 TCGA-A2-A0D3-01 Luminal A -TCGA-E2-A10F TCGA-E2-A10F-01 Luminal A -TCGA-AO-A03V TCGA-AO-A03V-01 Luminal A -TCGA-A2-A0EW TCGA-A2-A0EW-01 Luminal A -TCGA-BH-A0GY TCGA-BH-A0GY-01 Luminal A -TCGA-A2-A0EV TCGA-A2-A0EV-01 Luminal A -TCGA-BH-A0BC TCGA-BH-A0BC-01 Luminal A -TCGA-A2-A0YC TCGA-A2-A0YC-01 Luminal A -TCGA-A2-A0EU TCGA-A2-A0EU-01 Luminal A -TCGA-A2-A0ET TCGA-A2-A0ET-01 Luminal A -TCGA-A2-A04Y TCGA-A2-A04Y-01 Luminal A -TCGA-BH-A0HQ TCGA-BH-A0HQ-01 Luminal A -TCGA-A2-A0ES TCGA-A2-A0ES-01 Luminal A -TCGA-BH-A0BA TCGA-BH-A0BA-01 Luminal A -TCGA-E2-A10B TCGA-E2-A10B-01 Luminal A -TCGA-BH-A0B1 TCGA-BH-A0B1-01 Luminal A -TCGA-BH-A0DH TCGA-BH-A0DH-01 Luminal A -TCGA-BH-A0B4 TCGA-BH-A0B4-01 Luminal A -TCGA-BH-A0H9 TCGA-BH-A0H9-01 Luminal A -TCGA-AO-A0J9 TCGA-AO-A0J9-01 Luminal A -TCGA-AO-A12G TCGA-AO-A12G-01 Luminal A -TCGA-A2-A0SY TCGA-A2-A0SY-01 Luminal A -TCGA-BH-A0E7 TCGA-BH-A0E7-01 Luminal A -TCGA-AO-A03M TCGA-AO-A03M-01 Luminal A -TCGA-BH-A0BV TCGA-BH-A0BV-01 Luminal A -TCGA-BH-A0B8 TCGA-BH-A0B8-01 Luminal A -TCGA-A2-A0CZ TCGA-A2-A0CZ-01 Luminal A -TCGA-A2-A0SU TCGA-A2-A0SU-01 Luminal A -TCGA-AO-A12E TCGA-AO-A12E-01 Luminal A -TCGA-E2-A106 TCGA-E2-A106-01 Luminal A -TCGA-A2-A0CV TCGA-A2-A0CV-01 Luminal A -TCGA-AO-A12C TCGA-AO-A12C-01 Luminal A -TCGA-B6-A0RG TCGA-B6-A0RG-01 Luminal A -TCGA-A2-A0CS TCGA-A2-A0CS-01 Luminal A -TCGA-A2-A0EO TCGA-A2-A0EO-01 Luminal A -TCGA-A2-A0CQ TCGA-A2-A0CQ-01 Luminal A -TCGA-A2-A0EN TCGA-A2-A0EN-01 Luminal A -TCGA-AO-A12A TCGA-AO-A12A-01 Luminal A -TCGA-A2-A0CP TCGA-A2-A0CP-01 Luminal A -TCGA-AO-A126 TCGA-AO-A126-01 Luminal A -TCGA-AO-A125 TCGA-AO-A125-01 Luminal A -TCGA-A2-A0EM TCGA-A2-A0EM-01 Luminal A -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A -TCGA-AQ-A04L TCGA-AQ-A04L-01 Luminal A -TCGA-B6-A0IO TCGA-B6-A0IO-01 Luminal A -TCGA-B6-A0IP TCGA-B6-A0IP-01 Luminal A -TCGA-B6-A0WZ TCGA-B6-A0WZ-01 Luminal A -TCGA-B6-A0I5 TCGA-B6-A0I5-01 Luminal A -TCGA-B6-A0RV TCGA-B6-A0RV-01 Luminal A -TCGA-B6-A0RO TCGA-B6-A0RO-01 Luminal A -TCGA-B6-A0RN TCGA-B6-A0RN-01 Luminal A -TCGA-B6-A0WT TCGA-B6-A0WT-01 Luminal A -TCGA-B6-A0IA TCGA-B6-A0IA-01 Luminal A -TCGA-B6-A0RI TCGA-B6-A0RI-01 Luminal A -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A -TCGA-A2-A0EX TCGA-A2-A0EX-01 Luminal A -TCGA-AO-A0JJ TCGA-AO-A0JJ-01 Luminal A -TCGA-E2-A105 TCGA-E2-A105-01 Luminal A -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A -TCGA-A8-A06P TCGA-A8-A06P-01 Luminal A -TCGA-A8-A06T TCGA-A8-A06T-01 Luminal A -TCGA-A8-A06Y TCGA-A8-A06Y-01 Luminal A -TCGA-A8-A07E TCGA-A8-A07E-01 Luminal A -TCGA-A8-A07F TCGA-A8-A07F-01 Luminal A -TCGA-A8-A07G TCGA-A8-A07G-01 Luminal A -TCGA-A8-A07J TCGA-A8-A07J-01 Luminal A -TCGA-A8-A07P TCGA-A8-A07P-01 Luminal A -TCGA-A8-A083 TCGA-A8-A083-01 Luminal A -TCGA-A8-A086 TCGA-A8-A086-01 Luminal A -TCGA-A8-A08A TCGA-A8-A08A-01 Luminal A -TCGA-A8-A08C TCGA-A8-A08C-01 Luminal A -TCGA-A8-A08O TCGA-A8-A08O-01 Luminal A -TCGA-A8-A08T TCGA-A8-A08T-01 Luminal A -TCGA-A8-A08Z TCGA-A8-A08Z-01 Luminal A -TCGA-A8-A090 TCGA-A8-A090-01 Luminal A -TCGA-A8-A091 TCGA-A8-A091-01 Luminal A -TCGA-A8-A093 TCGA-A8-A093-01 Luminal A -TCGA-A8-A099 TCGA-A8-A099-01 Luminal A -TCGA-A8-A09A TCGA-A8-A09A-01 Luminal A -TCGA-A8-A09B TCGA-A8-A09B-01 Luminal A -TCGA-A8-A09T TCGA-A8-A09T-01 Luminal A -TCGA-A8-A09V TCGA-A8-A09V-01 Luminal A -TCGA-A8-A0A1 TCGA-A8-A0A1-01 Luminal A -TCGA-A8-A0A2 TCGA-A8-A0A2-01 Luminal A -TCGA-A8-A0A4 TCGA-A8-A0A4-01 Luminal A -TCGA-A8-A0A6 TCGA-A8-A0A6-01 Luminal A -TCGA-A8-A0AD TCGA-A8-A0AD-01 Luminal A -TCGA-AN-A03X TCGA-AN-A03X-01 Luminal A -TCGA-AN-A046 TCGA-AN-A046-01 Luminal A -TCGA-AN-A04A TCGA-AN-A04A-01 Luminal A -TCGA-AN-A0FD TCGA-AN-A0FD-01 Luminal A -TCGA-AN-A0FN TCGA-AN-A0FN-01 Luminal A -TCGA-AN-A0FS TCGA-AN-A0FS-01 Luminal A -TCGA-AN-A0FT TCGA-AN-A0FT-01 Luminal A -TCGA-AN-A0FW TCGA-AN-A0FW-01 Luminal A -TCGA-AN-A0FZ TCGA-AN-A0FZ-01 Luminal A -TCGA-AN-A0XL TCGA-AN-A0XL-01 Luminal A -TCGA-AN-A0XN TCGA-AN-A0XN-01 Luminal A -TCGA-AN-A0XO TCGA-AN-A0XO-01 Luminal A -TCGA-AN-A0XP TCGA-AN-A0XP-01 Luminal A -TCGA-AN-A0XS TCGA-AN-A0XS-01 Luminal A -TCGA-AN-A0XT TCGA-AN-A0XT-01 Luminal A -TCGA-AN-A0XV TCGA-AN-A0XV-01 Luminal A -TCGA-AR-A0TW TCGA-AR-A0TW-01 Luminal A -TCGA-AR-A1AK TCGA-AR-A1AK-01 Luminal A -TCGA-AR-A1AL TCGA-AR-A1AL-01 Luminal A -TCGA-AR-A1AN TCGA-AR-A1AN-01 Luminal A -TCGA-AR-A1AP TCGA-AR-A1AP-01 Luminal A -TCGA-AR-A1AS TCGA-AR-A1AS-01 Luminal A -TCGA-AR-A1AU TCGA-AR-A1AU-01 Luminal A -TCGA-AR-A1AW TCGA-AR-A1AW-01 Luminal A -TCGA-AR-A1AX TCGA-AR-A1AX-01 Luminal A -TCGA-BH-A0AZ TCGA-BH-A0AZ-01 Luminal A -TCGA-BH-A0B0 TCGA-BH-A0B0-01 Luminal A -TCGA-BH-A0BM TCGA-BH-A0BM-01 Luminal A -TCGA-BH-A0BO TCGA-BH-A0BO-01 Luminal A -TCGA-BH-A0BP TCGA-BH-A0BP-01 Luminal A -TCGA-BH-A0BQ TCGA-BH-A0BQ-01 Luminal A -TCGA-BH-A0BR TCGA-BH-A0BR-01 Luminal A -TCGA-BH-A0BS TCGA-BH-A0BS-01 Luminal A -TCGA-BH-A0BT TCGA-BH-A0BT-01 Luminal A -TCGA-BH-A0C1 TCGA-BH-A0C1-01 Luminal A -TCGA-BH-A0DE TCGA-BH-A0DE-01 Luminal A -TCGA-BH-A0DG TCGA-BH-A0DG-01 Luminal A -TCGA-BH-A0DI TCGA-BH-A0DI-01 Luminal A -TCGA-BH-A0DO TCGA-BH-A0DO-01 Luminal A -TCGA-BH-A0DT TCGA-BH-A0DT-01 Luminal A -TCGA-BH-A0DX TCGA-BH-A0DX-01 Luminal A -TCGA-BH-A0E9 TCGA-BH-A0E9-01 Luminal A -TCGA-BH-A0EI TCGA-BH-A0EI-01 Luminal A -TCGA-BH-A0H3 TCGA-BH-A0H3-01 Luminal A -TCGA-BH-A0H5 TCGA-BH-A0H5-01 Luminal A -TCGA-BH-A0HA TCGA-BH-A0HA-01 Luminal A -TCGA-BH-A0W4 TCGA-BH-A0W4-01 Luminal A -TCGA-BH-A0W5 TCGA-BH-A0W5-01 Luminal A -TCGA-BH-A0W7 TCGA-BH-A0W7-01 Luminal A -TCGA-BH-A18H TCGA-BH-A18H-01 Luminal A -TCGA-BH-A18I TCGA-BH-A18I-01 Luminal A -TCGA-C8-A12N TCGA-C8-A12N-01 Luminal A -TCGA-C8-A12O TCGA-C8-A12O-01 Luminal A -TCGA-C8-A12Y TCGA-C8-A12Y-01 Luminal A -TCGA-C8-A132 TCGA-C8-A132-01 Luminal A -TCGA-C8-A133 TCGA-C8-A133-01 Luminal A -TCGA-C8-A1HI TCGA-C8-A1HI-01 Luminal A -TCGA-D8-A141 TCGA-D8-A141-01 Luminal A -TCGA-E2-A14Q TCGA-E2-A14Q-01 Luminal A -TCGA-E2-A14T TCGA-E2-A14T-01 Luminal A -TCGA-E2-A14Z TCGA-E2-A14Z-01 Luminal A -TCGA-E2-A153 TCGA-E2-A153-01 Luminal A -TCGA-E2-A154 TCGA-E2-A154-01 Luminal A -TCGA-E2-A156 TCGA-E2-A156-01 Luminal A -TCGA-E2-A15C TCGA-E2-A15C-01 Luminal A -TCGA-E2-A15D TCGA-E2-A15D-01 Luminal A -TCGA-E2-A15E TCGA-E2-A15E-01 Luminal A -TCGA-E2-A15F TCGA-E2-A15F-01 Luminal A -TCGA-E2-A15G TCGA-E2-A15G-01 Luminal A -TCGA-E2-A15H TCGA-E2-A15H-01 Luminal A -TCGA-E2-A15I TCGA-E2-A15I-01 Luminal A -TCGA-E2-A15J TCGA-E2-A15J-01 Luminal A -TCGA-E2-A15O TCGA-E2-A15O-01 Luminal A -TCGA-E2-A15P TCGA-E2-A15P-01 Luminal A -TCGA-E2-A15R TCGA-E2-A15R-01 Luminal A -TCGA-E2-A1B1 TCGA-E2-A1B1-01 Luminal A -TCGA-E2-A1B4 TCGA-E2-A1B4-01 Luminal A -TCGA-E2-A1B6 TCGA-E2-A1B6-01 Luminal A -TCGA-E2-A1BC TCGA-E2-A1BC-01 Luminal A -TCGA-E2-A1BD TCGA-E2-A1BD-01 Luminal A -TCGA-A2-A0SV TCGA-A2-A0SV-01 Luminal B -TCGA-AO-A03O TCGA-AO-A03O-01 Luminal B -TCGA-A2-A0SW TCGA-A2-A0SW-01 Luminal B -TCGA-B6-A0WW TCGA-B6-A0WW-01 Luminal B -TCGA-BH-A18J TCGA-BH-A18J-01 Luminal B -TCGA-BH-A18L TCGA-BH-A18L-01 Luminal B -TCGA-A8-A06X TCGA-A8-A06X-01 Luminal B -TCGA-B6-A0IC TCGA-B6-A0IC-01 Luminal B -TCGA-BH-A18U TCGA-BH-A18U-01 Luminal B -TCGA-BH-A1EW TCGA-BH-A1EW-01 Luminal B -TCGA-AR-A0TY TCGA-AR-A0TY-01 Luminal B -TCGA-B6-A0X5 TCGA-B6-A0X5-01 Luminal B -TCGA-B6-A0WV TCGA-B6-A0WV-01 Luminal B -TCGA-B6-A0RL TCGA-B6-A0RL-01 Luminal B -TCGA-AR-A0U2 TCGA-AR-A0U2-01 Luminal B -TCGA-B6-A0IB TCGA-B6-A0IB-01 Luminal B -TCGA-AO-A0J7 TCGA-AO-A0J7-01 Luminal B -TCGA-AO-A0J3 TCGA-AO-A0J3-01 Luminal B -TCGA-D8-A13Y TCGA-D8-A13Y-01 Luminal B -TCGA-A7-A13F TCGA-A7-A13F-01 Luminal B -TCGA-BH-A0HU TCGA-BH-A0HU-01 Luminal B -TCGA-D8-A140 TCGA-D8-A140-01 Luminal B -TCGA-A7-A0CJ TCGA-A7-A0CJ-01 Luminal B -TCGA-AQ-A04H TCGA-AQ-A04H-01 Luminal B -TCGA-BH-A0H0 TCGA-BH-A0H0-01 Luminal B -TCGA-BH-A0BD TCGA-BH-A0BD-01 Luminal B -TCGA-A2-A0T3 TCGA-A2-A0T3-01 Luminal B -TCGA-A2-A0T4 TCGA-A2-A0T4-01 Luminal B -TCGA-A2-A0YH TCGA-A2-A0YH-01 Luminal B -TCGA-A2-A0YG TCGA-A2-A0YG-01 Luminal B -TCGA-A2-A0EY TCGA-A2-A0EY-01 Luminal B -TCGA-A2-A0D4 TCGA-A2-A0D4-01 Luminal B -TCGA-BH-A0AY TCGA-BH-A0AY-01 Luminal B -TCGA-E2-A107 TCGA-E2-A107-01 Luminal B -TCGA-AO-A0JI TCGA-AO-A0JI-01 Luminal B -TCGA-E2-A10C TCGA-E2-A10C-01 Luminal B -TCGA-E2-A10A TCGA-E2-A10A-01 Luminal B -TCGA-BH-A0C0 TCGA-BH-A0C0-01 Luminal B -TCGA-E2-A109 TCGA-E2-A109-01 Luminal B -TCGA-AO-A0JC TCGA-AO-A0JC-01 Luminal B -TCGA-BH-A0HW TCGA-BH-A0HW-01 Luminal B -TCGA-AO-A0JD TCGA-AO-A0JD-01 Luminal B -TCGA-AO-A0JM TCGA-AO-A0JM-01 Luminal B -TCGA-A2-A0CW TCGA-A2-A0CW-01 Luminal B -TCGA-A2-A0ER TCGA-A2-A0ER-01 Luminal B -TCGA-A2-A0CT TCGA-A2-A0CT-01 Luminal B -TCGA-AO-A12B TCGA-AO-A12B-01 Luminal B -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B -TCGA-B6-A0IM TCGA-B6-A0IM-01 Luminal B -TCGA-AO-A03P TCGA-AO-A03P-01 Luminal B -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B -TCGA-A8-A06N TCGA-A8-A06N-01 Luminal B -TCGA-A8-A06O TCGA-A8-A06O-01 Luminal B -TCGA-A8-A06Q TCGA-A8-A06Q-01 Luminal B -TCGA-A8-A06R TCGA-A8-A06R-01 Luminal B -TCGA-A8-A06Z TCGA-A8-A06Z-01 Luminal B -TCGA-A8-A079 TCGA-A8-A079-01 Luminal B -TCGA-A8-A07L TCGA-A8-A07L-01 Luminal B -TCGA-A8-A07S TCGA-A8-A07S-01 Luminal B -TCGA-A8-A07W TCGA-A8-A07W-01 Luminal B -TCGA-A8-A07Z TCGA-A8-A07Z-01 Luminal B -TCGA-A8-A082 TCGA-A8-A082-01 Luminal B -TCGA-A8-A084 TCGA-A8-A084-01 Luminal B -TCGA-A8-A085 TCGA-A8-A085-01 Luminal B -TCGA-A8-A08F TCGA-A8-A08F-01 Luminal B -TCGA-A8-A08G TCGA-A8-A08G-01 Luminal B -TCGA-A8-A08I TCGA-A8-A08I-01 Luminal B -TCGA-A8-A08P TCGA-A8-A08P-01 Luminal B -TCGA-A8-A095 TCGA-A8-A095-01 Luminal B -TCGA-A8-A096 TCGA-A8-A096-01 Luminal B -TCGA-A8-A097 TCGA-A8-A097-01 Luminal B -TCGA-A8-A09C TCGA-A8-A09C-01 Luminal B -TCGA-A8-A09D TCGA-A8-A09D-01 Luminal B -TCGA-A8-A09I TCGA-A8-A09I-01 Luminal B -TCGA-A8-A09M TCGA-A8-A09M-01 Luminal B -TCGA-A8-A09N TCGA-A8-A09N-01 Luminal B -TCGA-A8-A09Q TCGA-A8-A09Q-01 Luminal B -TCGA-A8-A09R TCGA-A8-A09R-01 Luminal B -TCGA-A8-A09W TCGA-A8-A09W-01 Luminal B -TCGA-A8-A09Z TCGA-A8-A09Z-01 Luminal B -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B -TCGA-AO-A03U TCGA-AO-A03U-01 NA -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA -TCGA-AO-A03R TCGA-AO-A03R-01 NA -TCGA-AO-A03T TCGA-AO-A03T-01 NA -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA -TCGA-BH-A203 TCGA-BH-A203-01 NA -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA -TCGA-BH-A208 TCGA-BH-A208-01 NA -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA -TCGA-BH-A204 TCGA-BH-A204-01 NA -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA -TCGA-AR-A256 TCGA-AR-A256-01 NA -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA -TCGA-BH-A209 TCGA-BH-A209-01 NA -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA -TCGA-A7-A13G TCGA-A7-A13G-01 NA -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA -TCGA-A7-A26E TCGA-A7-A26E-01 NA -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA -TCGA-A2-A259 TCGA-A2-A259-01 NA -TCGA-A2-A25A TCGA-A2-A25A-01 NA -TCGA-A2-A25B TCGA-A2-A25B-01 NA -TCGA-A2-A25C TCGA-A2-A25C-01 NA -TCGA-A2-A25D TCGA-A2-A25D-01 NA -TCGA-A2-A25E TCGA-A2-A25E-01 NA -TCGA-A2-A25F TCGA-A2-A25F-01 NA -TCGA-A7-A26F TCGA-A7-A26F-01 NA -TCGA-A7-A26G TCGA-A7-A26G-01 NA -TCGA-A7-A26H TCGA-A7-A26H-01 NA -TCGA-A7-A26I TCGA-A7-A26I-01 NA -TCGA-A7-A26J TCGA-A7-A26J-01 NA -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B -TCGA-AC-A23C TCGA-AC-A23C-01 NA -TCGA-AC-A23E TCGA-AC-A23E-01 NA -TCGA-AC-A23H TCGA-AC-A23H-01 NA -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA -TCGA-AR-A24H TCGA-AR-A24H-01 NA -TCGA-AR-A24K TCGA-AR-A24K-01 NA -TCGA-AR-A24L TCGA-AR-A24L-01 NA -TCGA-AR-A24M TCGA-AR-A24M-01 NA -TCGA-AR-A24N TCGA-AR-A24N-01 NA -TCGA-AR-A24O TCGA-AR-A24O-01 NA -TCGA-AR-A24P TCGA-AR-A24P-01 NA -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA -TCGA-AR-A24R TCGA-AR-A24R-01 NA -TCGA-AR-A24S TCGA-AR-A24S-01 NA -TCGA-AR-A24T TCGA-AR-A24T-01 NA -TCGA-AR-A24U TCGA-AR-A24U-01 NA -TCGA-AR-A24V TCGA-AR-A24V-01 NA -TCGA-AR-A24X TCGA-AR-A24X-01 NA -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA -TCGA-AR-A250 TCGA-AR-A250-01 NA -TCGA-AR-A251 TCGA-AR-A251-01 NA -TCGA-AR-A252 TCGA-AR-A252-01 NA -TCGA-AR-A254 TCGA-AR-A254-01 NA -TCGA-AR-A255 TCGA-AR-A255-01 NA -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA -TCGA-BH-A201 TCGA-BH-A201-01 NA -TCGA-BH-A202 TCGA-BH-A202-01 NA -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA -TCGA-C8-A26V TCGA-C8-A26V-01 NA -TCGA-C8-A26W TCGA-C8-A26W-01 NA -TCGA-C8-A26X TCGA-C8-A26X-01 NA -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA -TCGA-C8-A273 TCGA-C8-A273-01 NA -TCGA-C8-A274 TCGA-C8-A274-01 NA -TCGA-C8-A275 TCGA-C8-A275-01 NA -TCGA-C8-A278 TCGA-C8-A278-01 NA -TCGA-C8-A27A TCGA-C8-A27A-01 NA -TCGA-C8-A27B TCGA-C8-A27B-01 NA -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA -TCGA-D8-A27E TCGA-D8-A27E-01 NA -TCGA-D8-A27F TCGA-D8-A27F-01 NA -TCGA-D8-A27G TCGA-D8-A27G-01 NA -TCGA-D8-A27H TCGA-D8-A27H-01 NA -TCGA-D8-A27I TCGA-D8-A27I-01 NA -TCGA-D8-A27K TCGA-D8-A27K-01 NA -TCGA-D8-A27L TCGA-D8-A27L-01 NA -TCGA-D8-A27M TCGA-D8-A27M-01 NA -TCGA-D8-A27N TCGA-D8-A27N-01 NA -TCGA-D8-A27P TCGA-D8-A27P-01 NA -TCGA-D8-A27R TCGA-D8-A27R-01 NA -TCGA-D8-A27T TCGA-D8-A27T-01 NA -TCGA-D8-A27V TCGA-D8-A27V-01 NA -TCGA-D8-A27W TCGA-D8-A27W-01 NA -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA -TCGA-E2-A1II TCGA-E2-A1II-01 NA -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA -TCGA-E9-A226 TCGA-E9-A226-01 NA -TCGA-E9-A227 TCGA-E9-A227-01 NA -TCGA-E9-A228 TCGA-E9-A228-01 NA -TCGA-E9-A229 TCGA-E9-A229-01 NA -TCGA-E9-A22A TCGA-E9-A22A-01 NA -TCGA-E9-A22B TCGA-E9-A22B-01 NA -TCGA-E9-A22D TCGA-E9-A22D-01 NA -TCGA-E9-A22E TCGA-E9-A22E-01 NA -TCGA-E9-A22G TCGA-E9-A22G-01 NA -TCGA-E9-A22H TCGA-E9-A22H-01 NA -TCGA-E9-A243 TCGA-E9-A243-01 NA -TCGA-E9-A244 TCGA-E9-A244-01 NA -TCGA-E9-A245 TCGA-E9-A245-01 NA -TCGA-E9-A247 TCGA-E9-A247-01 NA -TCGA-E9-A248 TCGA-E9-A248-01 NA -TCGA-E9-A249 TCGA-E9-A249-01 NA -TCGA-E9-A24A TCGA-E9-A24A-01 NA -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA -TCGA-AR-A24W TCGA-AR-A24W-01 NA -TCGA-AC-A2B8 TCGA-AC-A2B8-01 NA -TCGA-AC-A2FF TCGA-AC-A2FF-01 NA -TCGA-AC-A2FB TCGA-AC-A2FB-01 NA -TCGA-AC-A2FG TCGA-AC-A2FG-01 NA -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA -TCGA-E9-A295 TCGA-E9-A295-01 NA -TCGA-E2-A15E TCGA-E2-A15E-06 NA -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/meta_CNA.txt b/core/src/test/scripts/test_data/study_portal_mismatch/meta_CNA.txt deleted file mode 100644 index 039a9d91b6e..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/meta_CNA.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -stable_id: gistic -show_profile_in_analysis_tab: true -profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC -data_filename: data_CNA.txt diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/meta_cancer_type.txt b/core/src/test/scripts/test_data/study_portal_mismatch/meta_cancer_type.txt deleted file mode 100644 index d578a428970..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/meta_cancer_type.txt +++ /dev/null @@ -1,3 +0,0 @@ -genetic_alteration_type: CANCER_TYPE -datatype: CANCER_TYPE -data_filename: cancer_type.txt diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/meta_mutations_extended.txt b/core/src/test/scripts/test_data/study_portal_mismatch/meta_mutations_extended.txt deleted file mode 100644 index b312d2c50e5..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/meta_mutations_extended.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations -data_filename: brca_tcga_pub.maf diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/meta_samples.txt b/core/src/test/scripts/test_data/study_portal_mismatch/meta_samples.txt deleted file mode 100644 index 7f19d43c7f2..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/meta_samples.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_portal_mismatch/meta_study.txt b/core/src/test/scripts/test_data/study_portal_mismatch/meta_study.txt deleted file mode 100644 index 0eb440c781e..00000000000 --- a/core/src/test/scripts/test_data/study_portal_mismatch/meta_study.txt +++ /dev/null @@ -1,8 +0,0 @@ -type_of_cancer: brca -cancer_study_identifier: brca_tcga_pub -name: Breast Invasive Carcinoma (TCGA, Nature 2012) -description: The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal. -citation: TCGA, Nature 2012 -pmid: 23000897 -groups: PUBLIC;GDAC;SU2C-PI3K -add_global_case_list: true diff --git a/core/src/test/scripts/test_data/study_quotes/brca_tcga_pub.maf b/core/src/test/scripts/test_data/study_quotes/brca_tcga_pub.maf deleted file mode 100644 index 66315271f8f..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/brca_tcga_pub.maf +++ /dev/null @@ -1,15 +0,0 @@ -#version 2.4 -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer MA:FImpact MA:FIS Amino_Acid_Change MA:link.MSA MA:link.PDB MA:link.var Tumor_Sample_UUID Matched_Norm_Sample_UUID HGVSc HGVSp HGVSp_Short Transcript_ID Exon_Number t_depth t_ref_count t_alt_count n_depth n_ref_count n_alt_count all_effects Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation ALLELE_NUM DISTANCE SYMBOL SYMBOL_SOURCE HGNC_ID BIOTYPE CANONICAL CCDS ENSP SWISSPROT TREMBL UNIPARC RefSeq SIFT PolyPhen EXON INTRON DOMAINS GMAF AFR_MAF AMR_MAF ASN_MAF EAS_MAF EUR_MAF SAS_MAF AA_MAF EA_MAF CLIN_SIG SOMATIC PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE IMPACT PICK VARIANT_CLASS TSL HGVS_OFFSET PHENO chromosome_name_wu start_wu stop_wu reference_wu variant_wu type_wu gene_name_wu transcript_name_wu transcript_species_wu transcript_source_wu transcript_version_wu strand_wu transcript_status_wu trv_type_wu c_position_wu amino_acid_change_wu ucsc_cons_wu domain_wu all_domains_wu deletion_substructures_wu transcript_error_wu default_gene_name_wu gene_name_source_wu ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf evs_ea evs_aa evs_all chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU EVS_EA EVS_AA EVS_All -OR11H1 genome.wustl.edu GRCh37 "22" 16449539 16449539 -1 Missense_Mutation SNP A A G TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.49 V89A getma.org/?cm=msa&ty=f&p=O11H1_HUMAN&rb=1&re=154&var=V89A NA getma.org/?cm=var&var=hg19,22,16449539,A,G&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.266T>C p.Val89Ala p.V89A ENST00000252835 1/1 0 0 OR11H1,missense_variant,p.Val89Ala,ENST00000252835,NM_001005239.1; G ENSG00000130538 ENST00000252835 Transcript missense_variant 267/982 266/981 89/326 V/A gTc/gCc rs199856986,COSM1484040 1 OR11H1 HGNC 15404 protein_coding YES CCDS33594.1 ENSP00000252835 O11H1_HUMAN UPI000004B1CF NM_001005239.1 deleterious(0.02) possibly_damaging(0.589) 1/1 Transmembrane_helices:TMhelix,PROSITE_profiles:PS50262,hmmpanther:PTHR24242:SF201,hmmpanther:PTHR24242,Gene3D:1.20.1070.10,Superfamily_domains:SSF81321 0,1 MODERATE 1 SNV 0,1 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC ENSG00000130538 65 0 0.00 38 6 13.64 - - - 22 16449539 16449539 A G SNP OR11H1 ENST00000252835 human ensembl 69_37n -1 known missense c.266 p.V89A 0.234 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR11H1 HGNC - - - -TMEM247 genome.wustl.edu GRCh37 2 46707888 "46707888 1 Frame_Shift_Del DEL G G - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.463delG p.Ala155ArgfsTer59 p.A155Rfs*59 ENST00000434431 2/3 0 0 TMEM247,frameshift_variant,p.Ala155ArgfsTer59,ENST00000434431,NM_001145051.2;TMEM247,intron_variant,,ENST00000432241,; - ENSG00000187600 ENST00000434431 Transcript frameshift_variant 462/659 462/659 154/219 E/X gaG/ga COSM1408208,~rs70940616 1 TMEM247 HGNC 42967 protein_coding YES CCDS56117.1 ENSP00000388684 TM247_HUMAN UPI0000366EF8 NM_001145051.2 2/3 Coiled-coils_(Ncoils):Coil,Pfam_domain:PF15444 -:0.0202 -:0.0439 1,0 HIGH 1 deletion 1 1,0 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 20 0 0.00 7 3 30.00 - - - 2 46707888 46707888 G - DEL TMEM247 ENST00000434431 human ensembl 69_37n +1 known frame_shift_del c.462 p.A155fs 0.083 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC - - - -ABLIM1 genome.wustl.edu GRCh37 10 116247760 "116247760" -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 3.39 H333R getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=285&re=339&var=H333R getma.org/pdb.php?prot=ABLM1_HUMAN&from=285&to=339&var=H333R getma.org/?cm=var&var=hg19,10,116247760,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.998A>G p.His333Arg p.H333R ENST00000277895 8/23 0 0 ABLIM1,missense_variant,p.His273Arg,ENST00000533213,;ABLIM1,missense_variant,p.His273Arg,ENST00000369252,NM_001003408.1,NM_001003407.1;ABLIM1,missense_variant,p.His17Arg,ENST00000392952,NM_006720.3;ABLIM1,missense_variant,p.His17Arg,ENST00000369266,;ABLIM1,missense_variant,p.His333Arg,ENST00000277895,NM_002313.5;ABLIM1,missense_variant,p.His17Arg,ENST00000369253,;ABLIM1,missense_variant,p.His17Arg,ENST00000428430,;ABLIM1,upstream_gene_variant,,ENST00000440467,;ABLIM1,missense_variant,p.His273Arg,ENST00000392955,;ABLIM1,missense_variant,p.His273Arg,ENST00000369256,; C ENSG00000099204 ENST00000277895 Transcript missense_variant 1096/2657 998/2337 333/778 H/R cAt/cGt COSM1474374,COSM1474373,COSM1474375 1 ABLIM1 HGNC 78 protein_coding YES CCDS7590.1 ENSP00000277895 ABLM1_HUMAN UPI0000418D06 NM_002313.5 deleterious(0) probably_damaging(0.988) 8/23 PROSITE_profiles:PS50023,hmmpanther:PTHR24213:SF18,hmmpanther:PTHR24213,Gene3D:2.10.110.10,SMART_domains:SM00132,Superfamily_domains:SSF57716 1,1,1 MODERATE 1 SNV 1,1,1 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC ENSG00000099204 77 0 0.00 36 13 26.53 - - - 10 116247760 116247760 T C SNP ABLIM1 ENST00000277895 human ensembl 69_37n -1 known missense c.998 p.H333R 1.000 smart_Znf_LIM pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM - no_errors ABLIM1 HGNC - - - -ADAMTS20 genome.wustl.edu GRCh37 12 43944926 43944926 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.85 Y80C getma.org/?cm=msa&ty=f&p=ATS20_HUMAN&rb=40&re=186&var=Y80C NA getma.org/?cm=var&var=hg19,12,43944926,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.Tyr80Cys p.Y80C ENST00000389420 2/39 0 0 ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000389420,NM_025003.3;ADAMTS20,missense_variant,p.Tyr80Cys,ENST00000553158,; C ENSG00000173157 ENST00000389420 Transcript missense_variant 239/6076 239/5733 80/1910 Y/C tAt/tGt COSM1476552,COSM1476551 1 ADAMTS20 HGNC 17178 protein_coding YES CCDS31778.2 ENSP00000374071 ATS20_HUMAN UPI00004565F4 NM_025003.3 deleterious(0) probably_damaging(1) 2/39 hmmpanther:PTHR13723,hmmpanther:PTHR13723:SF165,Pfam_domain:PF01562 1,1 MODERATE 1 SNV 1,1 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC ENSG00000173157 50 0 0.00 19 17 45.95 - - - 12 43944926 43944926 T C SNP ADAMTS20 ENST00000389420 human ensembl 69_37n -1 known missense c.239 p.Y80C 1.000 pfam_Peptidase_M12B_N pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B - no_errors ADAMTS20 HGNC - - - -CADM2 genome.wustl.edu GRCh37 3 85932472 85932472 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 p.R81R ENST00000407528 3/10 0 0 CADM2,synonymous_variant,p.=,ENST00000383699,NM_001167675.1,NM_001256504.1,NM_001256505.1;CADM2,synonymous_variant,,ENST00000407528,NM_001167674.1;CADM2,synonymous_variant,p.=,ENST00000405615,NM_153184.3; T ENSG00000175161 ENST00000407528 Transcript synonymous_variant 305/1422 243/1308 81/435 R cgC/cgT COSM1178952,COSM1178953 1 CADM2 HGNC 29849 protein_coding CCDS54614.1 ENSP00000384575 CADM2_HUMAN G3XHN8_HUMAN UPI000006DE82 NM_001167674.1 3/10 PROSITE_profiles:PS50835,hmmpanther:PTHR23277,hmmpanther:PTHR23277:SF56,Pfam_domain:PF07686,Gene3D:2.60.40.10,SMART_domains:SM00408,SMART_domains:SM00409,Superfamily_domains:SSF48726 1,1 LOW SNV 1,1 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC ENSG00000175161 57 0 0.00 22 23 51.11 - - - 3 85932472 85932472 C T SNP CADM2 ENST00000405615 human ensembl 69_37n +1 known silent c.249 p.R83 0.920 pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM2 HGNC - - - -DTNB genome.wustl.edu GRCh37" 2 25678299 25678299 -1 Missense_Mutation SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C "Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.125 V382M getma.org/?cm=msa&ty=f&p=DTNB_HUMAN&rb=283&re=473&var=V382M NA getma.org/?cm=var&var=hg19,2,25678299,C,T&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1144C>A p.Val382Met p.V382M ENST00000406818 11/21 0 0 DTNB,missense_variant,p.Val382Met,ENST00000406818,NM_001256303.1,NM_021907.4;DTNB,missense_variant,p.Val382Met,ENST00000407661,NM_183360.2,NM_001256304.1;DTNB,missense_variant,p.Val382Met,ENST00000404103,NM_033147.3;DTNB,missense_variant,p.Val382Met,ENST00000288642,;DTNB,missense_variant,p.Val325Met,ENST00000496972,NM_001256308.1;DTNB,missense_variant,p.Val178Met,ENST00000545439,;DTNB,intron_variant,,ENST00000407038,NM_033148.3;DTNB,intron_variant,,ENST00000407186,;DTNB,intron_variant,,ENST00000405222,NM_183361.2;DTNB,intron_variant,,ENST00000489756,;DTNB,intron_variant,,ENST00000481841,;DTNB,intron_variant,,ENST00000486555,;DTNB,3_prime_UTR_variant,,ENST00000398951,;DTNB,non_coding_transcript_exon_variant,,ENST00000485845,;DTNB,non_coding_transcript_exon_variant,,ENST00000479898,;DTNB,intron_variant,,ENST00000356599,;DTNB,intron_variant,,ENST00000482145,; T ENSG00000138101 ENST00000406818 Transcript missense_variant 1394/2474 1144/1884 382/627 V/M Gtg/Atg COSM3839175,COSM3839176 1 DTNB HGNC 3058 protein_coding YES CCDS46237.1 ENSP00000384084 DTNB_HUMAN Q53TC8_HUMAN,Q53T51_HUMAN,Q53SF9_HUMAN,Q53QV1_HUMAN,F8W9U0_HUMAN,E9PE76_HUMAN,E7ES64_HUMAN UPI0000129949 NM_001256303.1,NM_021907.4 deleterious(0.03) benign(0.379) 11/21 hmmpanther:PTHR11915:SF227,hmmpanther:PTHR11915,PIRSF_domain:PIRSF038204 1,1 MODERATE 1 SNV 1,1 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC ENSG00000138101 35 0 0.00 9 9 50.00 - - - 2 25678299 25678299 C T SNP DTNB ENST00000406818 human ensembl 69_37n -1 known missense c.1144 p.V382M 1.000 pirsf_Distrobrevin pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ - no_errors DTNB HGNC - - - -KAT2A genome.wustl.edu GRCh37 17 40272381 40272381 -1 Silent SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.471C>T p.= p.H157H ENST00000225916 3/18 0 0 KAT2A,synonymous_variant,p.=,ENST00000225916,NM_021078.2;CTD-2132N18.3,synonymous_variant,p.=,ENST00000592574,;RAB5C,downstream_gene_variant,,ENST00000393860,NM_201434.2;RAB5C,downstream_gene_variant,,ENST00000346213,NM_004583.3;HSPB9,upstream_gene_variant,,ENST00000355067,NM_033194.2;CTD-2132N18.3,missense_variant,p.Thr150Met,ENST00000592248,;KAT2A,synonymous_variant,p.=,ENST00000465682,;CTD-2132N18.3,3_prime_UTR_variant,,ENST00000585562,;KAT2A,upstream_gene_variant,,ENST00000592310,;KAT2A,upstream_gene_variant,,ENST00000588759,; A ENSG00000108773 ENST00000225916 Transcript synonymous_variant 525/3109 471/2514 157/837 H caC/caT rs536716483,COSM1479581 1 KAT2A HGNC 4201 protein_coding YES CCDS11417.1 ENSP00000225916 KAT2A_HUMAN K7ERS6_HUMAN UPI000000D978 NM_021078.2 3/18 hmmpanther:PTHR22880:SF124,hmmpanther:PTHR22880,Pfam_domain:PF06466,PIRSF_domain:PIRSF003048 A:0.0002 A:0 A:0 A:0.001 A:0 A:0 0,1 LOW 1 SNV 0,1 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene ENSG00000267261 40 0 0.00 30 36 54.55 - - - 17 40272381 40272381 G A SNP ENSG00000267261 ENST00000592248 human ensembl 69_37n -1 known missense c.449 p.T150M 0.486 smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom - no_errors CTD-2132N18.3 Clone_based_vega_gene - - - -MSH3 genome.wustl.edu GRCh37 5 80024722 80024722 1 Frame_Shift_Del DEL T T - TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1508delT p.Leu503TrpfsTer5 p.L503Wfs*5 ENST00000265081 10/24 0 0 MSH3,frameshift_variant,p.Leu503TrpfsTer5,ENST00000265081,NM_002439.4;MSH3,non_coding_transcript_exon_variant,,ENST00000512258,; - ENSG00000113318 ENST00000265081 Transcript frameshift_variant 1586/4092 1506/3414 502/1137 S/X tcT/tc 1 MSH3 HGNC 7326 protein_coding YES CCDS34195.1 ENSP00000265081 MSH3_HUMAN UPI0000DBEE85 NM_002439.4 10/24 Superfamily_domains:SSF53150,Gene3D:3.30.420.110,Pfam_domain:PF05188,hmmpanther:PTHR11361,hmmpanther:PTHR11361:SF34 HIGH 1 deletion 2 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC ENSG00000113318 83 0 0.00 12 2 14.29 - - - 5 80024722 80024722 T - DEL MSH3 ENST00000265081 human ensembl 69_37n +1 known frame_shift_del c.1506 p.L503fs 0.998 pfam_DNA_mismatch_repair_MutS_connt,superfamily_DNA_mismatch_repair_MutS_connt pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_connt,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mismatch_repair_MutS_connt,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C - no_errors MSH3 HGNC - - - -MYB genome.wustl.edu GRCh37 6 135507043 135507044 1 Frame_Shift_Ins INS - - A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.27dupA p.Tyr10IlefsTer2 p.Y10Ifs*2 ENST00000367814 2/15 0 0 MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000341911,NM_001130173.1,NM_001161658.1,NM_001161656.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000316528,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000442647,NM_001161660.1,NM_001130172.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367814,NM_001161659.1,NM_005375.2;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525369,NM_001161657.1;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000527615,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528774,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534121,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533624,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000534044,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000420123,;MYB,upstream_gene_variant,,ENST00000430686,;MYB,non_coding_transcript_exon_variant,,ENST00000531845,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000367812,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533837,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000438901,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525477,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000463282,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000339290,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533808,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525514,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529586,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526889,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526320,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531519,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000533384,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000531737,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000529262,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526565,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528015,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000526187,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525002,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528343,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528140,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000528345,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000525940,;MYB,frameshift_variant,p.Tyr10Ter,ENST00000531634,;MYB,frameshift_variant,p.Tyr10IlefsTer2,ENST00000524588,; A ENSG00000118513 ENST00000367814 Transcript frameshift_variant 212-213/3302 26-27/1923 9/640 I/IX ata/atAa COSM1487247,COSM1487248 1 MYB HGNC 7545 protein_coding CCDS5174.1 ENSP00000356788 MYB_HUMAN Q9UMI7_HUMAN,Q708J0_HUMAN,Q708E9_HUMAN,Q708E3_HUMAN UPI000012FAEA NM_001161659.1,NM_005375.2 2/15 hmmpanther:PTHR10641,hmmpanther:PTHR10641:SF454 1,1 HIGH insertion 1 1,1 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC ENSG00000118513 50 0 0.00 36 4 10.00 - - - 6 135507043 135507044 - A INS MYB ENST00000341911 human ensembl 69_37n +1 known frame_shift_ins c.26_27 p.Y10fs 1.000:0.997 NULL pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors MYB HGNC - - - -NPIPB15 genome.wustl.edu GRCh37 16 74425902 74425902 1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx neutral 0.0 I358T getma.org/?cm=msa&ty=f&p=NPPL2_HUMAN&rb=283&re=382&var=I358T NA getma.org/?cm=var&var=hg19,16,74425902,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.1256T>C p.Ile419Thr p.I419T ENST00000429990 7/7 0 0 NPIPB15,missense_variant,p.Ile419Thr,ENST00000429990,; C ENSG00000196436 ENST00000429990 Transcript missense_variant 1352/1428 1256/1332 419/443 I/T aTa/aCa rs141751158,COSM1479088,COSM1479089 1 NPIPB15 HGNC 34409 protein_coding YES ENSP00000411140 NPB15_HUMAN UPI000198C783 tolerated_low_confidence(0.06) benign(0.341) 7/7 hmmpanther:PTHR15438 0,1,1 MODERATE 1 SNV 0,1,1 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 20 0 0.00 10 4 28.57 - - - 16 74425902 74425902 T C SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.1256 p.I419T 0.999 NULL pfam_NPIP - no_errors NPIPL2 HGNC - - - -OTOR genome.wustl.edu GRCh37 20 16730581 16730581 1 Missense_Mutation SNP G G A TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx medium 2.69 V97M getma.org/?cm=msa&ty=f&p=OTOR_HUMAN&rb=43&re=108&var=V97M getma.org/pdb.php?prot=OTOR_HUMAN&from=43&to=108&var=V97M getma.org/?cm=var&var=hg19,20,16730581,G,A&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.289G>A p.Val97Met p.V97M ENST00000246081 3/4 0 0 OTOR,missense_variant,p.Val97Met,ENST00000246081,NM_020157.3;OTOR,non_coding_transcript_exon_variant,,ENST00000486129,;OTOR,intron_variant,,ENST00000490148,; A ENSG00000125879 ENST00000246081 Transcript missense_variant 333/1477 289/387 97/128 V/M Gtg/Atg COSM1410526 1 OTOR HGNC 8517 protein_coding YES CCDS13124.1 ENSP00000246081 OTOR_HUMAN UPI0000047809 NM_020157.3 deleterious(0) benign(0.344) 3/4 hmmpanther:PTHR23158,Gene3D:2.30.30.40,Pfam_domain:PF07653,SMART_domains:SM00326,Superfamily_domains:SSF50044 1 MODERATE 1 SNV 1 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC ENSG00000125879 57 0 0.00 36 9 20.00 - - - 20 16730581 16730581 G A SNP OTOR ENST00000246081 human ensembl 69_37n +1 known missense c.289 p.V97M 0.963 pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain - no_errors OTOR HGNC - - - -P2RY10 genome.wustl.edu GRCh37 X 78216689 78216689 1 Silent SNP C C T TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx NA db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.672C>T p.= p.S224S ENST00000171757 4/4 0 0 P2RY10,synonymous_variant,p.=,ENST00000171757,NM_014499.2;P2RY10,synonymous_variant,p.=,ENST00000544091,NM_198333.1;P2RY10,downstream_gene_variant,,ENST00000475374,;P2RY10,downstream_gene_variant,,ENST00000461541,; T ENSG00000078589 ENST00000171757 Transcript synonymous_variant 952/1714 672/1020 224/339 S tcC/tcT COSM1491292 1 P2RY10 HGNC 19906 protein_coding YES CCDS14442.1 ENSP00000171757 P2Y10_HUMAN UPI0000050471 NM_014499.2 4/4 PROSITE_profiles:PS50262,hmmpanther:PTHR24232:SF6,hmmpanther:PTHR24232,Gene3D:1.20.1070.10,Pfam_domain:PF00001,Superfamily_domains:SSF81321 1 LOW 1 SNV 1 X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC ENSG00000078589 65 0 0.00 46 10 17.86 - - - X 78216689 78216689 C T SNP P2RY10 ENST00000171757 human ensembl 69_37n +1 known silent c.672 p.S224 0.092 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors P2RY10 HGNC - - - -PIEZO1 genome.wustl.edu GRCh37 16 88790292 88790292 -1 Missense_Mutation SNP T T C TCGA-A1-A0SB-01 TCGA-A1-A0SB-10 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx low 1.18 Q1441R getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1441R NA getma.org/?cm=var&var=hg19,16,88790292,T,C&fts=all db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 c.4322A>G p.Gln1441Arg p.Q1441R ENST00000301015 31/51 0 0 PIEZO1,missense_variant,p.Gln1441Arg,ENST00000301015,NM_001142864.2;PIEZO1,missense_variant,p.Gln115Arg,ENST00000474606,;PIEZO1,upstream_gene_variant,,ENST00000327397,;PIEZO1,upstream_gene_variant,,ENST00000466823,;RP5-1142A6.9,downstream_gene_variant,,ENST00000564984,;PIEZO1,non_coding_transcript_exon_variant,,ENST00000566414,;PIEZO1,upstream_gene_variant,,ENST00000419505,;PIEZO1,upstream_gene_variant,,ENST00000497793,;PIEZO1,upstream_gene_variant,,ENST00000495568,;PIEZO1,downstream_gene_variant,,ENST00000475586,;PIEZO1,downstream_gene_variant,,ENST00000491917,; C ENSG00000103335 ENST00000301015 Transcript missense_variant 4569/8072 4322/7566 1441/2521 Q/R cAg/cGg COSM1479166 1 PIEZO1 HGNC 28993 protein_coding YES CCDS54058.1 ENSP00000301015 PIEZ1_HUMAN UPI0001B300F3 NM_001142864.2 tolerated(0.25) possibly_damaging(0.78) 31/51 hmmpanther:PTHR13167,hmmpanther:PTHR13167:SF40 1 MODERATE 1 SNV 1 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC ENSG00000103335 37 0 0.00 20 8 28.57 - - - 16 88790292 88790292 T C SNP PIEZO1 ENST00000301015 human ensembl 69_37n -1 novel missense c.4322 p.Q1441R 1.000 NULL pfam_DUF3595 - no_errors PIEZO1 HGNC - - - diff --git a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_cna.txt b/core/src/test/scripts/test_data/study_quotes/case_lists/cases_cna.txt deleted file mode 100644 index 89017f557c2..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_cna.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_cna -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_cnaseq.txt b/core/src/test/scripts/test_data/study_quotes/case_lists/cases_cnaseq.txt deleted file mode 100644 index 7e04801124f..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_cnaseq.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_cnaseq -case_list_name: Samples profiled for mutations and CNA -case_list_description: This is this case list that contains all samples that are profiled for mutations and CNA. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-BH-A0HL-01 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_custom.txt b/core/src/test/scripts/test_data/study_quotes/case_lists/cases_custom.txt deleted file mode 100644 index ccd642963b9..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_custom.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_custom -case_list_name: this is an optional custom case list -case_list_description: this is an optional custom case list -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 "TCGA-A1-A0SE-01" "TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 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TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 diff --git a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_sequenced.txt b/core/src/test/scripts/test_data/study_quotes/case_lists/cases_sequenced.txt deleted file mode 100644 index 2eb5bf57b79..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/case_lists/cases_sequenced.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: study_es_0 -stable_id: study_es_0_sequenced -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SK-01 TCGA-A2-A04P-01 TCGA-A2-A0CM-01 TCGA-B6-A0WX-01 TCGA-BH-A0E0-01 TCGA-BH-A0HL-01 TCGA-BH-A18K-01 TCGA-BH-A18V-01 TCGA-BH-A1F0-01 TCGA-GI-A2C8-01 diff --git a/core/src/test/scripts/test_data/study_quotes/data_CNA.txt b/core/src/test/scripts/test_data/study_quotes/data_CNA.txt deleted file mode 100644 index e584d4d13b7..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/data_CNA.txt +++ /dev/null @@ -1,8 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TEST-A23C-01 TEST-A23E-01 TEST-A23H-01 TEST-A2B8-01 TEST-A2FB-01 TEST-A2FF-01 TEST-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 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0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 -1 0 0 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 0 0 0 0 -1 0 0 -1 0 -1 0 0 0 0 0 0 1 -1 0 -1 0 -1 -1 -1 -1 0 0 -1 -1 0 1 -1 0 0 0 0 0 -1 0 0 -1 0 0 0 0 0 -1 -1 -1 -1 -1 0 0 0 -1 -1 -1 -1 0 0 -1 -2 -1 -1 0 0 0 -1 0 1 0 0 0 0 0 0 0 0 0 0 0 -1 0 -1 -1 0 0 -1 0 0 -1 0 0 -1 0 -1 0 0 0 0 1 0 0 -1 0 0 -1 1 0 0 -1 0 0 0 0 -1 0 1 0 0 0 0 0 0 0 0 -1 0 0 -1 -1 0 0 0 0 0 0 0 -1 -1 0 -1 -1 -1 1 0 0 2 0 0 0 0 0 1 0 -1 0 0 0 0 -1 0 0 0 1 -1 0 -1 0 1 0 0 -1 0 -1 1 0 0 0 -1 0 0 -1 -1 0 0 0 -1 0 0 -1 0 -1 0 0 0 -1 -1 0 0 0 0 0 0 0 -1 -1 -1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 -1 -1 diff --git a/core/src/test/scripts/test_data/study_quotes/data_patients.txt b/core/src/test/scripts/test_data/study_quotes/data_patients.txt deleted file mode 100644 index a51b6e91b31..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/data_patients.txt +++ /dev/null @@ -1,830 +0,0 @@ -#Patient Identifier Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 -PATIENT_ID OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TCGA-A2-A04P 1:DECEASED 17.97 1:Recurred/Progressed [Not Available] -TCGA-A1-A0SK 1:DECEASED 31.77 [Not Available] -TCGA-A2-A0CM 1:DECEASED 24.77 1:Recurred/Progressed [Not Available] -TCGA-AR-A1AR 1:DECEASED 17.18 [Not Available] [Not Available] -TCGA-B6-A0WX 1:DECEASED 21.45 1:Recurred/Progressed [Not Available] -TCGA-BH-A1F0 1:DECEASED 25.79 1:Recurred/Progressed [Not Available] -TCGA-B6-A0I6 1:DECEASED 32.56 1:Recurred/Progressed [Not Available] -TCGA-BH-A18V 1:DECEASED 51.09 [Not Available] [Not Available] -TCGA-BH-A18Q 1:DECEASED 55.59 [Not Available] [Not Available] -TCGA-BH-A18K 1:DECEASED 90.74 1:Recurred/Progressed [Not Available] -TCGA-BH-A0HL 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-BH-A0E0 0:LIVING 4.37 0:DiseaseFree 4.37 -TCGA-BH-A0RX 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-A7-A13D 0:LIVING "8.77" 0:DiseaseFree 8.77 -TCGA-BH-A0E6 0:LIVING 9.59 0:DiseaseFree 9.59 -TCGA-AO-A0J4 0:LIVING 9.66 0:DiseaseFree 9.66 -TCGA-A7-A0CE 0:LIVING 8.31 0:DiseaseFree 8.31 -TCGA-A7-A13E 0:LIVING 9.43 0:DiseaseFree 9.43 -TCGA-A7-A0DA 0:LIVING "12.25 0:DiseaseFree 12.25" -TCGA-D8-A142 0:LIVING 2 0:DiseaseFree 2 -TCGA-D8-A143 0:LIVING 5.65 0:DiseaseFree 5.65 -TCGA-AQ-A04J 0:LIVING 5.22 0:DiseaseFree 5.22 -TCGA-BH-A0HN 0:LIVING 16.95 0:DiseaseFree 16.95 -TCGA-A2-A0T0 0:LIVING 11.07 0:DiseaseFree 11.07 -TCGA-A2-A0YE 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-A2-A0YJ 0:LIVING 10.71 0:DiseaseFree 10.71 -TCGA-A2-A0D0 0:LIVING 21.12 0:DiseaseFree 21.12 -TCGA-A2-A04U 0:LIVING 22.01 0:DiseaseFree 22.01 -TCGA-AO-A0J6 0:LIVING 25.46 0:DiseaseFree 25.46 -TCGA-A2-A0YM 0:LIVING 21.72 0:DiseaseFree 21.72 -TCGA-A2-A0D2 0:LIVING 25 0:DiseaseFree 25 -TCGA-BH-A0B3 0:LIVING 39.52 0:DiseaseFree 39.52 -TCGA-A2-A04Q 0:LIVING 41.89 0:DiseaseFree 41.89 -TCGA-A2-A0SX 0:LIVING 42.32 1:Recurred/Progressed [Not Available] -TCGA-AO-A0JL 0:LIVING 43.33 0:DiseaseFree 43.33 -TCGA-AO-A12F 0:LIVING 48.33 0:DiseaseFree 48.33 -TCGA-BH-A0B9 0:LIVING 51.65 0:DiseaseFree 51.65 -TCGA-A2-A04T 0:LIVING 64.06 0:DiseaseFree 64.06 -TCGA-B6-A0RT 0:LIVING 89.39 0:DiseaseFree 89.39 -TCGA-AO-A128 0:LIVING 94.52 0:DiseaseFree 94.52 -TCGA-AO-A129 0:LIVING 96.03 0:DiseaseFree 96.03 -TCGA-AO-A124 0:LIVING 102.47 0:DiseaseFree 102.47 -TCGA-B6-A0RU 0:LIVING 131.12 0:DiseaseFree 131.12 -TCGA-B6-A0IQ 0:LIVING 127.18 0:DiseaseFree 127.18 -TCGA-B6-A0I2 0:LIVING 125.7 0:DiseaseFree 125.7 -TCGA-B6-A0IJ 0:LIVING 176.85 0:DiseaseFree 176.85 -TCGA-B6-A0X1 0:LIVING 186.31 0:DiseaseFree 186.31 -TCGA-B6-A0RE 0:LIVING 211.38 0:DiseaseFree 211.38 -TCGA-A2-A0ST 0:LIVING 53.98 0:DiseaseFree 53.98 -TCGA-AR-A0TP 0:LIVING 78.59 0:DiseaseFree 78.59 -TCGA-A1-A0SO 0:LIVING 27.99 0:DiseaseFree 27.99 -TCGA-A8-A07C 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A07O 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A07R 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-A8-A07U 0:LIVING 9.95 0:DiseaseFree 9.95 -TCGA-A8-A08H 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08R 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04D 0:LIVING 1.71 0:DiseaseFree 1.71 -TCGA-AN-A0AL 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-AN-A0AR 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0AT 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0FJ 0:LIVING 7.92 0:DiseaseFree 7.92 -TCGA-AN-A0FL 0:LIVING 7.56 0:DiseaseFree 7.56 -TCGA-AN-A0FX 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0G0 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-AN-A0XU 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AR-A0TS 0:LIVING 37.39 0:DiseaseFree 37.39 -TCGA-AR-A0TU 0:LIVING 11.83 0:DiseaseFree 11.83 -TCGA-AR-A0U0 0:LIVING 0.26 0:DiseaseFree 0.26 -TCGA-AR-A0U1 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-AR-A0U4 0:LIVING 53.45 0:DiseaseFree 53.45 -TCGA-AR-A1AH 0:LIVING 75.5 0:DiseaseFree 75.5 -TCGA-AR-A1AI 0:LIVING 61.8 0:DiseaseFree 61.8 -TCGA-AR-A1AJ 0:LIVING 52.7 0:DiseaseFree 52.7 -TCGA-AR-A1AQ 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-AR-A1AY 0:LIVING 20.17 0:DiseaseFree 20.17 -TCGA-BH-A0AV 0:LIVING 38.77 0:DiseaseFree 38.77 -TCGA-BH-A0BG 0:LIVING 24.84 0:DiseaseFree 24.84 -TCGA-BH-A0BL 0:LIVING 43.99 0:DiseaseFree 43.99 -TCGA-BH-A0BW 0:LIVING 11.66 0:DiseaseFree 11.66 -TCGA-BH-A0DL 0:LIVING 48.2 0:DiseaseFree 48.2 -TCGA-BH-A0WA 0:LIVING 12.22 0:DiseaseFree 12.22 -TCGA-BH-A18G 0:LIVING 2 0:DiseaseFree 2 -TCGA-C8-A12K 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12V 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A131 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A134 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A147 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-E2-A14N 0:LIVING 44.35 0:DiseaseFree 44.35 -TCGA-E2-A14R 0:LIVING 27.76 0:DiseaseFree 27.76 -TCGA-E2-A14X 0:LIVING 22.73 0:DiseaseFree 22.73 -TCGA-E2-A14Y 0:LIVING 22.6 0:DiseaseFree 22.6 -TCGA-E2-A150 0:LIVING 19.42 0:DiseaseFree 19.42 -TCGA-E2-A158 0:LIVING 14.78 0:DiseaseFree 14.78 -TCGA-E2-A159 0:LIVING 16.92 0:DiseaseFree 16.92 -TCGA-E2-A1AZ 0:LIVING 64.52 0:DiseaseFree 64.52 -TCGA-E2-A1B5 0:LIVING 25.43 0:DiseaseFree 25.43 -TCGA-A8-A08L 1:DECEASED 9.99 [Not Available] [Not Available] -TCGA-BH-A1EV 1:DECEASED 11.99 1:Recurred/Progressed [Not Available] -TCGA-B6-A0I9 1:DECEASED 12.12 1:Recurred/Progressed [Not Available] -TCGA-A8-A09X 1:DECEASED 14 [Not Available] [Not Available] -TCGA-B6-A0IK 1:DECEASED 18.76 1:Recurred/Progressed [Not Available] -TCGA-BH-A18P 1:DECEASED 30.26 1:Recurred/Progressed [Not Available] -TCGA-A8-A08J 1:DECEASED 37.03 [Not Available] [Not Available] -TCGA-BH-A18R 1:DECEASED 37.49 0:DiseaseFree 36.11 -TCGA-AR-A1AT 1:DECEASED 41.79 [Not Available] [Not Available] -TCGA-B6-A0RS 1:DECEASED 100.6 1:Recurred/Progressed [Not Available] -TCGA-BH-A0DZ 0:LIVING 16.26 0:DiseaseFree 16.26 -TCGA-A2-A0T1 0:LIVING 10.58 0:DiseaseFree 10.58 -TCGA-AO-A0J2 0:LIVING 19.22 0:DiseaseFree 19.22 -TCGA-BH-A0AW 0:LIVING 20.43 0:DiseaseFree 20.43 -TCGA-BH-A0EE 0:LIVING 30.98 0:DiseaseFree 30.98 -TCGA-A2-A0D1 0:LIVING 25.82 0:DiseaseFree 25.82 -TCGA-AO-A03N 0:LIVING 54.04 1:Recurred/Progressed [Not Available] -TCGA-A2-A0CY 0:LIVING 42.32 0:DiseaseFree 42.32 -TCGA-A2-A04X 0:LIVING 44.32 0:DiseaseFree 44.32 -TCGA-A2-A0CX 0:LIVING 42.81 0:DiseaseFree 42.81 -TCGA-A2-A04W 0:LIVING 63.01 0:DiseaseFree 63.01 -TCGA-AO-A12D 0:LIVING 64 0:DiseaseFree 64 -TCGA-A2-A0CL 0:LIVING 60.02 0:DiseaseFree 60.02 -TCGA-AO-A0JE 0:LIVING 64.56 0:DiseaseFree 64.56 -TCGA-A2-A0EQ 0:LIVING 67.45 0:DiseaseFree 67.45 -TCGA-AO-A03L 0:LIVING 80.23 0:DiseaseFree 80.23 -TCGA-B6-A0RH 0:LIVING 188.84 0:DiseaseFree 188.84 -TCGA-A8-A075 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-A8-A076 0:LIVING 53.91 0:DiseaseFree 53.91 -TCGA-A8-A07B 0:LIVING 32.98 0:DiseaseFree 32.98 -TCGA-A8-A07I 0:LIVING 14 0:DiseaseFree 14 -TCGA-A8-A081 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08B 0:LIVING 23.06 0:DiseaseFree 23.06 -TCGA-A8-A08X 0:LIVING 33.97 0:DiseaseFree 33.97 -TCGA-A8-A092 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-A8-A094 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A09G 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A0A7 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04C 0:LIVING 1.77 0:DiseaseFree 1.77 -TCGA-AN-A0FV 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AR-A0TX 0:LIVING 0.49 0:DiseaseFree 0.49 -TCGA-BH-A0B7 0:LIVING 56.93 0:DiseaseFree 56.93 -TCGA-BH-A0HY 0:LIVING 28.48 0:DiseaseFree 28.48 -TCGA-C8-A12L 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12P 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Q 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12T 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Z 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A130 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A135 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A137 0:LIVING 0.1 0:DiseaseFree 0.1 -TCGA-C8-A138 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A1HF 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A13Z 0:LIVING 6.9 0:DiseaseFree 6.9 -TCGA-E2-A14P 0:LIVING 16 0:DiseaseFree 16 -TCGA-E2-A14V 0:LIVING 24.57 0:DiseaseFree 24.57 -TCGA-E2-A152 0:LIVING 19.32 1:Recurred/Progressed [Not Available] -TCGA-E2-A1B0 0:LIVING 41.76 0:DiseaseFree 41.76 -TCGA-A2-A0CU 1:DECEASED 5.16 0:DiseaseFree 4.57 -TCGA-AR-A0TR 1:DECEASED 5.26 [Not Available] [Not Available] -TCGA-BH-A18T 1:DECEASED 7.36 1:Recurred/Progressed [Not Available] -TCGA-B6-A0I8 1:DECEASED 24.61 1:Recurred/Progressed [Not Available] -TCGA-B6-A0X4 1:DECEASED 28.22 1:Recurred/Progressed [Not Available] -TCGA-A8-A06U 1:DECEASED 28.98 [Not Available] [Not Available] -TCGA-BH-A0EA 1:DECEASED 32.62 0:DiseaseFree 27.3 -TCGA-BH-A18N 1:DECEASED 37.72 [Not Available] [Not Available] -TCGA-BH-A1EU 1:DECEASED 42.25 0:DiseaseFree [Not Available] -TCGA-B6-A0X7 1:DECEASED 58.84 [Not Available] [Not Available] -TCGA-A2-A04V 1:DECEASED 63.08 1:Recurred/Progressed [Not Available] -TCGA-BH-A18S 1:DECEASED 66 0:DiseaseFree 66 -TCGA-BH-A18M 1:DECEASED 72.51 [Not Available] [Not Available] -TCGA-B6-A0RM 1:DECEASED 77.96 0:DiseaseFree 77.96 -TCGA-BH-A1ET 1:DECEASED 82.79 0:DiseaseFree [Not Available] -TCGA-B6-A0IN 1:DECEASED 84.53 1:Recurred/Progressed [Not Available] -TCGA-BH-A1EO 1:DECEASED 91.92 0:DiseaseFree [Not Available] -TCGA-B6-A0WS 1:DECEASED 97.41 0:DiseaseFree [Not Available] -TCGA-B6-A0RP 1:DECEASED 102.7 [Not Available] [Not Available] -TCGA-B6-A0IH 1:DECEASED 112.29 [Not Available] [Not Available] -TCGA-B6-A0WY 1:DECEASED 113.67 1:Recurred/Progressed [Not Available] -TCGA-BH-A1ES 1:DECEASED 113.74 1:Recurred/Progressed [Not Available] -TCGA-B6-A0X0 1:DECEASED 129.61 [Not Available] [Not Available] -TCGA-B6-A0RQ 1:DECEASED 140.38 0:DiseaseFree [Not Available] -TCGA-B6-A0IG 1:DECEASED 146.39 1:Recurred/Progressed [Not Available] -TCGA-BH-A0HO 0:LIVING 2.5 0:DiseaseFree 2.5 -TCGA-BH-A0DS 0:LIVING 2.53 0:DiseaseFree 2.53 -TCGA-BH-A0DQ 0:LIVING 3.22 0:DiseaseFree 3.22 -TCGA-BH-A0HK 0:LIVING 5.85 0:DiseaseFree 5.85 -TCGA-A7-A0CG 0:LIVING 5.45 0:DiseaseFree 5.45 -TCGA-A7-A0CH 0:LIVING 5.29 0:DiseaseFree 5.29 -TCGA-A7-A0DB 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-A7-A0D9 0:LIVING 5.22 0:DiseaseFree 5.22 -TCGA-AO-A0J8 0:LIVING 9.1 0:DiseaseFree 9.1 -TCGA-BH-A0GZ 0:LIVING 10.78 0:DiseaseFree 10.78 -TCGA-AO-A0JA 0:LIVING 11.37 1:Recurred/Progressed [Not Available] -TCGA-AO-A0JF 0:LIVING 11.63 0:DiseaseFree 11.63 -TCGA-A7-A0CD 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-D8-A145 0:LIVING 1.61 0:DiseaseFree 1.61 -TCGA-BH-A0HP 0:LIVING 13.6 0:DiseaseFree 13.6 -TCGA-BH-A0DK 0:LIVING 13.9 0:DiseaseFree 13.9 -TCGA-BH-A0E2 0:LIVING 12.35 0:DiseaseFree 12.35 -TCGA-A2-A0YI 0:LIVING 11.76 0:DiseaseFree 11.76 -TCGA-A2-A0YL 0:LIVING 8.8 0:DiseaseFree 8.8 -TCGA-AO-A0JG 0:LIVING 14.75 0:DiseaseFree 14.75 -TCGA-A2-A0YF 0:LIVING 9.49 0:DiseaseFree 9.49 -TCGA-BH-A0DP 0:LIVING 15.64 0:DiseaseFree 15.64 -TCGA-BH-A0E1 0:LIVING 15.67 0:DiseaseFree 15.67 -TCGA-A2-A0T5 0:LIVING 10.55 0:DiseaseFree 10.55 -TCGA-A2-A0T6 0:LIVING 11.3 0:DiseaseFree 11.3 -TCGA-BH-A0HI 0:LIVING 20.34 0:DiseaseFree 20.34 -TCGA-A2-A0T7 0:LIVING 13.04 0:DiseaseFree 13.04 -TCGA-BH-A0BJ 0:LIVING 21.68 0:DiseaseFree 21.68 -TCGA-BH-A0H7 0:LIVING 23.03 0:DiseaseFree 23.03 -TCGA-BH-A0HF 0:LIVING 23.88 0:DiseaseFree 23.88 -TCGA-BH-A0EB 0:LIVING 24.48 0:DiseaseFree 24.48 -TCGA-BH-A0H6 0:LIVING 24.54 0:DiseaseFree 24.54 -TCGA-A2-A0YD 0:LIVING 18.07 0:DiseaseFree 18.07 -TCGA-BH-A0HB 0:LIVING 26.48 0:DiseaseFree 26.48 -TCGA-BH-A0HX 0:LIVING 27.24 0:DiseaseFree 27.24 -TCGA-AO-A12H 0:LIVING 28.32 0:DiseaseFree 28.32 -TCGA-E2-A10E 0:LIVING 13.73 0:DiseaseFree 13.73 -TCGA-A2-A0D3 0:LIVING 24.18 0:DiseaseFree 24.18 -TCGA-E2-A10F 0:LIVING 11.83 0:DiseaseFree 11.83 -TCGA-AO-A03V 0:LIVING 29.11 0:DiseaseFree 29.11 -TCGA-A2-A0EW 0:LIVING 25.3 0:DiseaseFree 25.3 -TCGA-BH-A0GY 0:LIVING 30.13 0:DiseaseFree 30.13 -TCGA-A2-A0EV 0:LIVING 17.91 0:DiseaseFree 17.91 -TCGA-BH-A0BC 0:LIVING 32 0:DiseaseFree 32 -TCGA-A2-A0YC 0:LIVING 21.12 0:DiseaseFree 21.12 -TCGA-A2-A0EU 0:LIVING 24.08 0:DiseaseFree 24.08 -TCGA-A2-A0ET 0:LIVING 26.51 0:DiseaseFree 26.51 -TCGA-A2-A04Y 0:LIVING 25.07 0:DiseaseFree 25.07 -TCGA-BH-A0HQ 0:LIVING 36.83 0:DiseaseFree 36.83 -TCGA-A2-A0ES 0:LIVING 32.89 0:DiseaseFree 32.89 -TCGA-BH-A0BA 0:LIVING 37.19 0:DiseaseFree 37.19 -TCGA-E2-A10B 0:LIVING 24.57 0:DiseaseFree 24.57 -TCGA-BH-A0B1 0:LIVING 37.72 0:DiseaseFree 37.72 -TCGA-BH-A0DH 0:LIVING 37.98 0:DiseaseFree 37.98 -TCGA-BH-A0B4 0:LIVING 39.13 0:DiseaseFree 39.13 -TCGA-BH-A0H9 0:LIVING 40.97 0:DiseaseFree 40.97 -TCGA-AO-A0J9 0:LIVING 41.23 1:Recurred/Progressed [Not Available] -TCGA-AO-A12G 0:LIVING 41.56 0:DiseaseFree 41.56 -TCGA-A2-A0SY 0:LIVING 37.91 0:DiseaseFree 37.91 -TCGA-BH-A0E7 0:LIVING 44.75 0:DiseaseFree 44.75 -TCGA-AO-A03M 0:LIVING 47.8 0:DiseaseFree 47.8 -TCGA-BH-A0BV 0:LIVING 49.9 0:DiseaseFree 49.9 -TCGA-BH-A0B8 0:LIVING 51.55 0:DiseaseFree 51.55 -TCGA-A2-A0CZ 0:LIVING 43.96 0:DiseaseFree 43.96 -TCGA-A2-A0SU 0:LIVING 44.38 0:DiseaseFree 44.38 -TCGA-AO-A12E 0:LIVING 57.23 0:DiseaseFree 57.23 -TCGA-E2-A106 0:LIVING 51.09 0:DiseaseFree 51.09 -TCGA-A2-A0CV 0:LIVING 61.44 0:DiseaseFree 61.44 -TCGA-AO-A12C 0:LIVING 65.48 0:DiseaseFree 65.48 -TCGA-B6-A0RG 0:LIVING 68.4 0:DiseaseFree 68.4 -TCGA-A2-A0CS 0:LIVING 75.5 0:DiseaseFree 75.5 -TCGA-A2-A0EO 0:LIVING 71.65 0:DiseaseFree 71.65 -TCGA-A2-A0CQ 0:LIVING 78.59 0:DiseaseFree 78.59 -TCGA-A2-A0EN 0:LIVING 82.63 0:DiseaseFree 82.63 -TCGA-AO-A12A 0:LIVING 90.48 0:DiseaseFree 90.48 -TCGA-A2-A0CP 0:LIVING 81.97 0:DiseaseFree 81.97 -TCGA-AO-A126 0:LIVING 93.63 0:DiseaseFree 93.63 -TCGA-AO-A125 0:LIVING 99.15 0:DiseaseFree 99.15 -TCGA-A2-A0EM 0:LIVING 90.58 0:DiseaseFree 90.58 -TCGA-A2-A04N 0:LIVING 103.59 0:DiseaseFree 103.59 -TCGA-AQ-A04L 0:LIVING 109.86 0:DiseaseFree 109.86 -TCGA-B6-A0IO 0:LIVING 110.06 0:DiseaseFree 110.06 -TCGA-B6-A0IP 0:LIVING 110.85 0:DiseaseFree 110.85 -TCGA-B6-A0WZ 0:LIVING 129.48 0:DiseaseFree 129.48 -TCGA-B6-A0I5 0:LIVING 149.45 0:DiseaseFree 149.45 -TCGA-B6-A0RV 0:LIVING 157.3 0:DiseaseFree 157.3 -TCGA-B6-A0RO 0:LIVING 161.9 0:DiseaseFree 161.9 -TCGA-B6-A0RN 0:LIVING 172.84 0:DiseaseFree 172.84 -TCGA-B6-A0WT 0:LIVING 177.28 0:DiseaseFree 177.28 -TCGA-B6-A0IA 0:LIVING 220.71 0:DiseaseFree 220.71 -TCGA-B6-A0RI 0:LIVING 223.24 1:Recurred/Progressed [Not Available] -TCGA-A1-A0SE 0:LIVING 43.37 0:DiseaseFree 43.37 -TCGA-A2-A0EX 0:LIVING 18.04 0:DiseaseFree 18.04 -TCGA-AO-A0JJ 0:LIVING 49.67 0:DiseaseFree 49.67 -TCGA-E2-A105 0:LIVING 38.21 0:DiseaseFree 38.21 -TCGA-A1-A0SD 0:LIVING 14.36 0:DiseaseFree 14.36 -TCGA-A1-A0SH 0:LIVING 47.21 0:DiseaseFree 47.21 -TCGA-A1-A0SJ 0:LIVING 14 0:DiseaseFree 14 -TCGA-A8-A06P 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A06T 0:LIVING 41.03 0:DiseaseFree 41.03 -TCGA-A8-A06Y 0:LIVING 25.99 0:DiseaseFree 25.99 -TCGA-A8-A07E 0:LIVING 19.97 0:DiseaseFree 19.97 -TCGA-A8-A07F 0:LIVING 18.92 0:DiseaseFree 18.92 -TCGA-A8-A07G 0:LIVING 18.92 0:DiseaseFree 18.92 -TCGA-A8-A07J 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A07P 0:LIVING 10.97 0:DiseaseFree 10.97 -TCGA-A8-A083 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A086 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A08A 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-A8-A08C 0:LIVING 19.94 0:DiseaseFree 19.94 -TCGA-A8-A08O 0:LIVING 30.95 0:DiseaseFree 30.95 -TCGA-A8-A08T 0:LIVING 92.97 0:DiseaseFree 92.97 -TCGA-A8-A08Z 0:LIVING 39.98 0:DiseaseFree 39.98 -TCGA-A8-A090 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A091 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A093 0:LIVING 17.91 0:DiseaseFree 17.91 -TCGA-A8-A099 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A09A 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A09B 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A09T 0:LIVING 18.99 0:DiseaseFree 18.99 -TCGA-A8-A09V 0:LIVING 15.01 0:DiseaseFree 15.01 -TCGA-A8-A0A1 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A0A2 0:LIVING 18.99 0:DiseaseFree 18.99 -TCGA-A8-A0A4 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A0A6 0:LIVING 21.03 0:DiseaseFree 21.03 -TCGA-A8-A0AD 0:LIVING 38.01 0:DiseaseFree 38.01 -TCGA-AN-A03X 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A046 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A04A 0:LIVING 2.92 0:DiseaseFree 2.92 -TCGA-AN-A0FD 0:LIVING 6.41 0:DiseaseFree 6.41 -TCGA-AN-A0FN 0:LIVING 7.16 0:DiseaseFree 7.16 -TCGA-AN-A0FS 0:LIVING 6.27 0:DiseaseFree 6.27 -TCGA-AN-A0FT 0:LIVING 6.01 0:DiseaseFree 6.01 -TCGA-AN-A0FW 0:LIVING 0.36 0:DiseaseFree 0.36 -TCGA-AN-A0FZ 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XL 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XN 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XO 0:LIVING 12.32 0:DiseaseFree 12.32 -TCGA-AN-A0XP 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0XS 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XT 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XV 0:LIVING 5.32 0:DiseaseFree 5.32 -TCGA-AR-A0TW 0:LIVING 24.28 0:DiseaseFree 24.28 -TCGA-AR-A1AK 0:LIVING 51.19 0:DiseaseFree 51.19 -TCGA-AR-A1AL 0:LIVING 48.79 0:DiseaseFree 48.79 -TCGA-AR-A1AN 0:LIVING 43.66 0:DiseaseFree 43.66 -TCGA-AR-A1AP 0:LIVING 39.92 0:DiseaseFree 39.92 -TCGA-AR-A1AS 0:LIVING 40.8 0:DiseaseFree 40.8 -TCGA-AR-A1AU 0:LIVING 46.29 0:DiseaseFree 46.29 -TCGA-AR-A1AW 0:LIVING 35.22 0:DiseaseFree 35.22 -TCGA-AR-A1AX 0:LIVING 36.24 0:DiseaseFree 36.24 -TCGA-BH-A0AZ 0:LIVING 28.48 0:DiseaseFree 28.48 -TCGA-BH-A0B0 0:LIVING 46.88 0:DiseaseFree 46.88 -TCGA-BH-A0BM 0:LIVING 36.7 0:DiseaseFree 36.7 -TCGA-BH-A0BO 0:LIVING 35.65 0:DiseaseFree 35.65 -TCGA-BH-A0BP 0:LIVING 48.66 0:DiseaseFree 48.66 -TCGA-BH-A0BQ 0:LIVING 27.14 0:DiseaseFree 27.14 -TCGA-BH-A0BR 0:LIVING 53.62 0:DiseaseFree 53.62 -TCGA-BH-A0BS 0:LIVING 53.88 0:DiseaseFree 53.88 -TCGA-BH-A0BT 0:LIVING 45.53 0:DiseaseFree 45.53 -TCGA-BH-A0C1 0:LIVING 43.96 0:DiseaseFree 43.96 -TCGA-BH-A0DE 0:LIVING 31.14 0:DiseaseFree 31.14 -TCGA-BH-A0DG 0:LIVING 23.42 0:DiseaseFree 23.42 -TCGA-BH-A0DI 0:LIVING 22.11 0:DiseaseFree 22.11 -TCGA-BH-A0DO 0:LIVING 17.25 0:DiseaseFree 17.25 -TCGA-BH-A0DT 0:LIVING 38.44 0:DiseaseFree 38.44 -TCGA-BH-A0DX 0:LIVING 47.37 0:DiseaseFree 47.37 -TCGA-BH-A0E9 0:LIVING 46.16 0:DiseaseFree 46.16 -TCGA-BH-A0EI 0:LIVING 24.41 0:DiseaseFree 24.41 -TCGA-BH-A0H3 0:LIVING 37.75 0:DiseaseFree 37.75 -TCGA-BH-A0H5 0:LIVING 35.48 0:DiseaseFree 35.48 -TCGA-BH-A0HA 0:LIVING 28.12 0:DiseaseFree 28.12 -TCGA-BH-A0W4 0:LIVING 5.75 0:DiseaseFree 5.75 -TCGA-BH-A0W5 0:LIVING 17.84 0:DiseaseFree 17.84 -TCGA-BH-A0W7 0:LIVING 18.33 0:DiseaseFree 18.33 -TCGA-BH-A18H 0:LIVING 0 0:DiseaseFree 0 -TCGA-BH-A18I 0:LIVING 7.23 0:DiseaseFree 7.23 -TCGA-C8-A12N 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12O 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Y 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A132 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A133 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HI 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-D8-A141 0:LIVING 3.71 0:DiseaseFree 3.71 -TCGA-E2-A14Q 0:LIVING 32 0:DiseaseFree 32 -TCGA-E2-A14T 0:LIVING 29.24 0:DiseaseFree 29.24 -TCGA-E2-A14Z 0:LIVING 17.02 1:Recurred/Progressed [Not Available] -TCGA-E2-A153 0:LIVING 19.25 0:DiseaseFree 19.25 -TCGA-E2-A154 0:LIVING 10.68 0:DiseaseFree 10.68 -TCGA-E2-A156 0:LIVING 15.8 0:DiseaseFree 15.8 -TCGA-E2-A15C 0:LIVING 16.3 0:DiseaseFree 16.3 -TCGA-E2-A15D 0:LIVING 10.35 0:DiseaseFree 10.35 -TCGA-E2-A15E 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-E2-A15F 0:LIVING 15.38 0:DiseaseFree 15.38 -TCGA-E2-A15G 0:LIVING 10.35 0:DiseaseFree 10.35 -TCGA-E2-A15H 0:LIVING 1.38 0:DiseaseFree 1.38 -TCGA-E2-A15I 0:LIVING 13.5 0:DiseaseFree 13.5 -TCGA-E2-A15J 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-E2-A15O 0:LIVING 12.98 0:DiseaseFree 12.98 -TCGA-E2-A15P 0:LIVING 10.35 0:DiseaseFree 10.35 -TCGA-E2-A15R 0:LIVING 10.84 0:DiseaseFree 10.84 -TCGA-E2-A1B1 0:LIVING 44.71 0:DiseaseFree 44.71 -TCGA-E2-A1B4 0:LIVING 29.93 0:DiseaseFree 29.93 -TCGA-E2-A1B6 0:LIVING 11.1 0:DiseaseFree 11.1 -TCGA-E2-A1BC 0:LIVING 9.76 0:DiseaseFree 9.76 -TCGA-E2-A1BD 0:LIVING 10.41 0:DiseaseFree 10.41 -TCGA-A2-A0SV 1:DECEASED 27.1 1:Recurred/Progressed [Not Available] -TCGA-AO-A03O 1:DECEASED 81.57 0:DiseaseFree 32.62 -TCGA-A2-A0SW 1:DECEASED 44.81 1:Recurred/Progressed [Not Available] -TCGA-B6-A0WW 1:DECEASED 18.3 1:Recurred/Progressed [Not Available] -TCGA-BH-A18J 1:DECEASED 20.07 1:Recurred/Progressed [Not Available] -TCGA-BH-A18L 1:DECEASED 26.64 [Not Available] [Not Available] -TCGA-A8-A06X 1:DECEASED 30.98 [Not Available] [Not Available] -TCGA-B6-A0IC 1:DECEASED 50.66 [Not Available] [Not Available] -TCGA-BH-A18U 1:DECEASED 51.35 0:DiseaseFree 43.27 -TCGA-BH-A1EW 1:DECEASED 55.65 1:Recurred/Progressed [Not Available] -TCGA-AR-A0TY 1:DECEASED 55.82 [Not Available] [Not Available] -TCGA-B6-A0X5 1:DECEASED 68.89 1:Recurred/Progressed [Not Available] -TCGA-B6-A0WV 1:DECEASED 79.57 0:DiseaseFree 79.57 -TCGA-B6-A0RL 1:DECEASED 81.11 0:DiseaseFree 81.11 -TCGA-AR-A0U2 1:DECEASED 83.81 1:Recurred/Progressed [Not Available] -TCGA-B6-A0IB 1:DECEASED 129.48 1:Recurred/Progressed [Not Available] -TCGA-AO-A0J7 0:LIVING 8.54 0:DiseaseFree 8.54 -TCGA-AO-A0J3 0:LIVING 9.92 0:DiseaseFree 9.92 -TCGA-D8-A13Y 0:LIVING 8.67 0:DiseaseFree 8.67 -TCGA-A7-A13F 0:LIVING 6.44 0:DiseaseFree 6.44 -TCGA-BH-A0HU 0:LIVING 12.88 0:DiseaseFree 12.88 -TCGA-D8-A140 0:LIVING 0.89 0:DiseaseFree 0.89 -TCGA-A7-A0CJ 0:LIVING 6.18 0:DiseaseFree 6.18 -TCGA-AQ-A04H 0:LIVING 14.42 0:DiseaseFree 14.42 -TCGA-BH-A0H0 0:LIVING 15.15 0:DiseaseFree 15.15 -TCGA-BH-A0BD 0:LIVING 18.2 0:DiseaseFree 18.2 -TCGA-A2-A0T3 0:LIVING 14.98 0:DiseaseFree 14.98 -TCGA-A2-A0T4 0:LIVING 12.98 0:DiseaseFree 12.98 -TCGA-A2-A0YH 0:LIVING 12.45 0:DiseaseFree 12.45 -TCGA-A2-A0YG 0:LIVING 13.27 0:DiseaseFree 13.27 -TCGA-A2-A0EY 0:LIVING 15.93 0:DiseaseFree 15.93 -TCGA-A2-A0D4 0:LIVING 16.3 0:DiseaseFree 16.3 -TCGA-BH-A0AY 0:LIVING 25.53 0:DiseaseFree 25.53 -TCGA-E2-A107 0:LIVING 25.07 1:Recurred/Progressed [Not Available] -TCGA-AO-A0JI 0:LIVING 38.5 0:DiseaseFree 38.5 -TCGA-E2-A10C 0:LIVING 28.02 0:DiseaseFree 28.02 -TCGA-E2-A10A 0:LIVING 11.56 1:Recurred/Progressed [Not Available] -TCGA-BH-A0C0 0:LIVING 41.72 0:DiseaseFree 41.72 -TCGA-E2-A109 0:LIVING 38.5 0:DiseaseFree 38.5 -TCGA-AO-A0JC 0:LIVING 50.82 0:DiseaseFree 50.82 -"TCGA-BH-A0HW" 0:LIVING 51.25 0:DiseaseFree 51.25 -TCGA-AO-A0JD 0:LIVING 59.56 0:DiseaseFree 59.56 -TCGA-AO-A0JM 0:LIVING 59.99 0:DiseaseFree 59.99 -TCGA-A2-A0CW 0:LIVING 57.49 0:DiseaseFree 57.49 -TCGA-A2-A0ER 0:LIVING 62.49 0:DiseaseFree 62.49 -TCGA-A2-A0CT 0:LIVING 62.98 0:DiseaseFree 62.98 -TCGA-AO-A12B 0:LIVING 77.5 0:DiseaseFree 77.5 -TCGA-A2-A04R 0:LIVING 77.67 0:DiseaseFree 77.67 -TCGA-B6-A0IM 0:LIVING 126.03 0:DiseaseFree 126.03 -TCGA-AO-A03P 0:LIVING 84.63 1:Recurred/Progressed [Not Available] -TCGA-A1-A0SM 0:LIVING 7.95 0:DiseaseFree 7.95 -TCGA-A8-A06N 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A06O 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A06Q 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A06R 0:LIVING 17.94 0:DiseaseFree 17.94 -TCGA-A8-A06Z 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A079 0:LIVING 9 0:DiseaseFree 9 -TCGA-A8-A07L 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-A8-A07S 0:LIVING 7.95 0:DiseaseFree 7.95 -TCGA-A8-A07W 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A07Z 0:LIVING 28.02 0:DiseaseFree 28.02 -TCGA-A8-A082 0:LIVING 18.04 0:DiseaseFree 18.04 -TCGA-A8-A084 0:LIVING 15.05 0:DiseaseFree 15.05 -TCGA-A8-A085 0:LIVING 36.93 0:DiseaseFree 36.93 -TCGA-A8-A08F 0:LIVING 18.04 0:DiseaseFree 18.04 -TCGA-A8-A08G 0:LIVING 19.91 0:DiseaseFree 19.91 -TCGA-A8-A08I 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A08P 0:LIVING 30.95 0:DiseaseFree 30.95 -TCGA-A8-A095 0:LIVING 41.92 0:DiseaseFree 41.92 -TCGA-A8-A096 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A097 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-A8-A09C 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A09D 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A09I 0:LIVING 33.05 0:DiseaseFree 33.05 -TCGA-A8-A09M 0:LIVING 15.01 0:DiseaseFree 15.01 -TCGA-A8-A09N 0:LIVING 1.02 0:DiseaseFree 1.02 -TCGA-A8-A09Q 0:LIVING 25 0:DiseaseFree 25 -TCGA-A8-A09R 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-A8-A09W 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-A8-A09Z 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A0A9 0:LIVING 13.01 0:DiseaseFree 13.01 -TCGA-A8-A0AB 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-AN-A03Y 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A041 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-AN-A049 0:LIVING 0.62 0:DiseaseFree 0.62 -TCGA-AN-A0AJ 0:LIVING 7.98 0:DiseaseFree 7.98 -TCGA-AN-A0AK 0:LIVING 7.33 0:DiseaseFree 7.33 -TCGA-AN-A0AM 0:LIVING 0.16 0:DiseaseFree 0.16 -TCGA-AN-A0AS 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0FF 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-AN-A0FK 0:LIVING 6.96 0:DiseaseFree 6.96 -TCGA-AN-A0FY 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XR 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0XW 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-AR-A0TQ 0:LIVING 49.28 0:DiseaseFree 49.28 -TCGA-AR-A0TT 0:LIVING 55.16 0:DiseaseFree 55.16 -TCGA-AR-A0TV 0:LIVING 29.7 0:DiseaseFree 29.7 -TCGA-AR-A0TZ 0:LIVING 43.14 0:DiseaseFree 43.14 -TCGA-AR-A0U3 0:LIVING 74.35 0:DiseaseFree 74.35 -TCGA-AR-A1AV 0:LIVING 42.55 0:DiseaseFree 42.55 -TCGA-BH-A0AU 0:LIVING 24.51 0:DiseaseFree 24.51 -TCGA-BH-A0B5 0:LIVING 48.33 0:DiseaseFree 48.33 -TCGA-BH-A0BF 0:LIVING 25.66 0:DiseaseFree 25.66 -TCGA-BH-A0BZ 0:LIVING 49.02 0:DiseaseFree 49.02 -TCGA-BH-A0C3 0:LIVING 48.1 0:DiseaseFree 48.1 -TCGA-BH-A0C7 0:LIVING 42.87 0:DiseaseFree 42.87 -TCGA-BH-A0DD 0:LIVING 45.76 0:DiseaseFree 45.76 -TCGA-BH-A0W3 0:LIVING 5.91 0:DiseaseFree 5.91 -TCGA-BH-A18F 0:LIVING 8.8 0:DiseaseFree 8.8 -TCGA-C8-A12M 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12U 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12W 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12X 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HG 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HL 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-C8-A1HM 0:LIVING 0.2 0:DiseaseFree 0.2 -TCGA-C8-A1HN 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-E2-A14O 0:LIVING 38.5 0:DiseaseFree 38.5 -TCGA-E2-A14S 0:LIVING 27.4 0:DiseaseFree 27.4 -TCGA-E2-A14W 0:LIVING 27.37 0:DiseaseFree 27.37 -TCGA-E2-A155 0:LIVING 18.17 0:DiseaseFree 18.17 -TCGA-E2-A15A 0:LIVING 16.49 0:DiseaseFree 16.49 -TCGA-E2-A15K 0:LIVING 1.12 0:DiseaseFree 1.12 -TCGA-E2-A15L 0:LIVING 10.87 0:DiseaseFree 10.87 -TCGA-E2-A15M 0:LIVING 7.69 0:DiseaseFree 7.69 -TCGA-E2-A15S 0:LIVING 9 0:DiseaseFree 9 -TCGA-E2-A15T 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-AO-A03U 1:DECEASED 59 0:DiseaseFree 56.74 -TCGA-B6-A0IE 1:DECEASED 65.64 1:Recurred/Progressed [Not Available] -TCGA-A2-A0YK 0:LIVING 10.97 0:DiseaseFree 10.97 -TCGA-E2-A108 0:LIVING 4.07 0:DiseaseFree 4.07 -TCGA-AO-A0JB 0:LIVING 37.78 0:DiseaseFree 37.78 -TCGA-AO-A03R 0:LIVING 56.08 0:DiseaseFree 56.08 -TCGA-AO-A03T 0:LIVING 39 0:DiseaseFree 39 -TCGA-AR-A1AO 0:LIVING 43.5 0:DiseaseFree 43.5 -TCGA-A2-A0YT 1:DECEASED 23.75 0:DiseaseFree 21.98 -TCGA-AQ-A0Y5 1:DECEASED 5.29 0:DiseaseFree [Not Available] -TCGA-EW-A1P8 1:DECEASED 7.85 1:Recurred/Progressed [Not Available] -TCGA-E2-A1LK 1:DECEASED 8.74 1:Recurred/Progressed [Not Available] -TCGA-BH-A1EY 1:DECEASED 17.68 1:Recurred/Progressed [Not Available] -TCGA-BH-A1F8 1:DECEASED 24.61 1:Recurred/Progressed [Not Available] -TCGA-BH-A1F2 1:DECEASED 31.51 0:DiseaseFree [Not Available] -TCGA-BH-A1FD 1:DECEASED 33.12 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FH 1:DECEASED 36.89 1:Recurred/Progressed [Not Available] -TCGA-BH-A203 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-BH-A1FM 1:DECEASED 45.6 [Not Available] [Not Available] -TCGA-BH-A1EX 1:DECEASED 49.54 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FL 1:DECEASED 54.96 1:Recurred/Progressed [Not Available] -TCGA-BH-A208 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-GM-A2D9 1:DECEASED 59.53 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FJ 1:DECEASED 63.31 [Not Available] [Not Available] -TCGA-BH-A1EN 1:DECEASED 67.42 0:DiseaseFree [Not Available] -TCGA-BH-A1FN 1:DECEASED 72.01 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FU 1:DECEASED 72.01 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FE 1:DECEASED 74.68 1:Recurred/Progressed [Not Available] -TCGA-BH-A204 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-BH-A1F5 1:DECEASED 89.1 0:DiseaseFree [Not Available] -TCGA-AR-A256 1:DECEASED 93.76 [Not Available] [Not Available] -TCGA-BH-A1F6 1:DECEASED 97.41 [Not Available] [Not Available] -TCGA-BH-A1FC 1:DECEASED 114.03 0:DiseaseFree [Not Available] -TCGA-BH-A1FB 1:DECEASED 120.54 1:Recurred/Progressed [Not Available] -TCGA-BH-A1FG 1:DECEASED 122.81 [Not Available] [Not Available] -TCGA-BH-A209 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-BH-A1FR 1:DECEASED 144.49 1:Recurred/Progressed [Not Available] -TCGA-AO-A1KS 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-A7-A13G 0:LIVING 6.83 0:DiseaseFree 6.83 -TCGA-D8-A1JS 0:LIVING 3.45 0:DiseaseFree 3.45 -TCGA-A7-A0DC 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-D8-A1JT 0:LIVING 4.04 0:DiseaseFree 4.04 -TCGA-A7-A26E 0:LIVING 13.83 0:DiseaseFree 13.83 -TCGA-D8-A1JH 0:LIVING 9.33 0:DiseaseFree 9.33 -TCGA-D8-A1JU 0:LIVING 3.48 0:DiseaseFree 3.48 -TCGA-AO-A1KO 0:LIVING 14.72 0:DiseaseFree 14.72 -TCGA-AO-A1KT 0:LIVING 17.77 0:DiseaseFree 17.77 -TCGA-AO-A0J5 0:LIVING 24.15 1:Recurred/Progressed [Not Available] -TCGA-B6-A1KC 0:LIVING 43.56 0:DiseaseFree 43.56 -TCGA-AO-A1KQ 0:LIVING 49.9 0:DiseaseFree 49.9 -TCGA-B6-A1KI 0:LIVING 48.06 0:DiseaseFree 48.06 -TCGA-AO-A1KP 0:LIVING 82.56 0:DiseaseFree 82.56 -TCGA-B6-A1KF 0:LIVING 101.45 0:DiseaseFree 101.45 -TCGA-B6-A1KN 0:LIVING 109.4 0:DiseaseFree 109.4 -TCGA-D8-A1XO 0:LIVING 7.95 0:DiseaseFree 7.95 -TCGA-D8-A1XT 0:LIVING 6.34 0:DiseaseFree 6.34 -TCGA-A1-A0SP 0:LIVING 19.15 0:DiseaseFree 19.15 -TCGA-D8-A1J8 0:LIVING 8.41 0:DiseaseFree 8.41 -TCGA-D8-A1JF 0:LIVING 3.15 0:DiseaseFree 3.15 -TCGA-D8-A1JG 0:LIVING 6.14 0:DiseaseFree 6.14 -TCGA-D8-A1XS 0:LIVING 0.59 0:DiseaseFree 0.59 -TCGA-A1-A0SB 0:LIVING 8.51 0:DiseaseFree 8.51 -TCGA-A1-A0SF 0:LIVING 48.06 0:DiseaseFree 48.06 -TCGA-A1-A0SG 0:LIVING 14.23 0:DiseaseFree 14.23 -TCGA-A1-A0SI 0:LIVING 20.83 0:DiseaseFree 20.83 -TCGA-A1-A0SN 0:LIVING 39.29 0:DiseaseFree 39.29 -TCGA-A1-A0SQ 0:LIVING 18.17 0:DiseaseFree 18.17 -TCGA-A2-A1FV 0:LIVING 15.11 0:DiseaseFree 15.11 -TCGA-A2-A1FW 0:LIVING 7.26 0:DiseaseFree 7.26 -TCGA-A2-A1FX 0:LIVING 30.72 0:DiseaseFree 30.72 -TCGA-A2-A1FZ 0:LIVING 13.44 0:DiseaseFree 13.44 -TCGA-A2-A1G0 0:LIVING 12.48 0:DiseaseFree 12.48 -TCGA-A2-A1G1 0:LIVING 12.19 0:DiseaseFree 12.19 -TCGA-A2-A1G4 0:LIVING 12.22 0:DiseaseFree 12.22 -TCGA-A2-A1G6 0:LIVING 4.34 0:DiseaseFree 4.34 -TCGA-A2-A259 0:LIVING 42.22 0:DiseaseFree 42.22 -TCGA-A2-A25A 0:LIVING 97.51 0:DiseaseFree 97.51 -TCGA-A2-A25B 0:LIVING 8.48 0:DiseaseFree 8.48 -TCGA-A2-A25C 0:LIVING 9.36 0:DiseaseFree 9.36 -TCGA-A2-A25D 0:LIVING 7.98 0:DiseaseFree 7.98 -TCGA-A2-A25E 0:LIVING 82.49 0:DiseaseFree 82.49 -TCGA-A2-A25F 0:LIVING 3.71 0:DiseaseFree 3.71 -TCGA-A7-A26F 0:LIVING 8.44 0:DiseaseFree 8.44 -TCGA-A7-A26G 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-A7-A26H 0:LIVING 2.1 0:DiseaseFree 2.1 -TCGA-A7-A26I 0:LIVING 4.01 0:DiseaseFree 4.01 -TCGA-A7-A26J 0:LIVING 2.2 1:Recurred/Progressed [Not Available] -TCGA-A8-A08S 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A09E 0:LIVING 30.95 0:DiseaseFree 30.95 -TCGA-A8-A09K 0:LIVING 29.93 0:DiseaseFree 29.93 -TEST-A23C 0:LIVING 0.95 0:DiseaseFree 0.95 -TEST-A23E 0:LIVING 2.37 0:DiseaseFree 2.37 -TEST-A23H 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-AO-A1KR 0:LIVING 70.31 0:DiseaseFree 70.31 -TCGA-AQ-A1H2 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-AQ-A1H3 0:LIVING 4.53 0:DiseaseFree 4.53 -TCGA-AR-A24H 0:LIVING 109.5 0:DiseaseFree 109.5 -TCGA-AR-A24K 0:LIVING 50.86 0:DiseaseFree 50.86 -TCGA-AR-A24L 0:LIVING 72.97 0:DiseaseFree 72.97 -TCGA-AR-A24M 0:LIVING 65.38 0:DiseaseFree 65.38 -TCGA-AR-A24N 0:LIVING 68.14 0:DiseaseFree 68.14 -TCGA-AR-A24O 0:LIVING 65.61 0:DiseaseFree 65.61 -TCGA-AR-A24P 0:LIVING 0.85 0:DiseaseFree 0.85 -TCGA-AR-A24Q 0:LIVING 65.97 0:DiseaseFree 65.97 -TCGA-AR-A24R 0:LIVING 57.33 0:DiseaseFree 57.33 -TCGA-AR-A24S 0:LIVING 62.03 0:DiseaseFree 62.03 -TCGA-AR-A24T 0:LIVING 53.22 0:DiseaseFree 53.22 -TCGA-AR-A24U 0:LIVING 53.32 0:DiseaseFree 53.32 -TCGA-AR-A24V 0:LIVING 54.14 0:DiseaseFree 54.14 -TCGA-AR-A24X 0:LIVING 48.13 0:DiseaseFree 48.13 -TCGA-AR-A24Z 0:LIVING 51.71 0:DiseaseFree 51.71 -TCGA-AR-A250 0:LIVING 56.08 0:DiseaseFree 56.08 -TCGA-AR-A251 0:LIVING 45.11 0:DiseaseFree 45.11 -TCGA-AR-A252 0:LIVING 40.61 0:DiseaseFree 40.61 -TCGA-AR-A254 0:LIVING 39.82 0:DiseaseFree 39.82 -TCGA-AR-A255 0:LIVING 34.76 0:DiseaseFree 34.76 -TCGA-BH-A0B2 0:LIVING 40.8 0:DiseaseFree 40.8 -TCGA-BH-A0DV 0:LIVING 45.14 0:DiseaseFree 45.14 -TCGA-BH-A201 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-BH-A202 0:LIVING 0.72 0:DiseaseFree 0.72 -TCGA-BH-A28Q [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-C8-A1HE 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HJ 0:LIVING 0.16 0:DiseaseFree 0.16 -TCGA-C8-A1HK 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A1HO 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A26V 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-C8-A26W 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A26X 0:LIVING 0.36 0:DiseaseFree 0.36 -TCGA-C8-A26Y 0:LIVING 0.43 0:DiseaseFree 0.43 -TCGA-C8-A26Z 0:LIVING 0.13 0:DiseaseFree 0.13 -TCGA-C8-A273 0:LIVING 0.2 0:DiseaseFree 0.2 -TCGA-C8-A274 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A275 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A278 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A27A 0:LIVING 12.19 0:DiseaseFree 12.19 -TCGA-C8-A27B 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-D8-A146 0:LIVING 11.3 0:DiseaseFree 11.3 -TCGA-D8-A1J9 0:LIVING 8.15 0:DiseaseFree 8.15 -TCGA-D8-A1JA 0:LIVING 0.59 0:DiseaseFree 0.59 -TCGA-D8-A1JB 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A1JC 0:LIVING 5.85 0:DiseaseFree 5.85 -TCGA-D8-A1JD 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-D8-A1JE 0:LIVING 1.87 0:DiseaseFree 1.87 -TCGA-D8-A1JI 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-D8-A1JJ 0:LIVING 9 0:DiseaseFree 9 -TCGA-D8-A1JK 0:LIVING 3.58 0:DiseaseFree 3.58 -TCGA-D8-A1JL 0:LIVING 8.71 0:DiseaseFree 8.71 -TCGA-D8-A1JM 0:LIVING 7.82 0:DiseaseFree 7.82 -TCGA-D8-A1JN 0:LIVING 7.13 0:DiseaseFree 7.13 -TCGA-D8-A1JP 0:LIVING 5.49 0:DiseaseFree 5.49 -TCGA-D8-A1X5 0:LIVING 5.62 0:DiseaseFree 5.62 -TCGA-D8-A1X6 0:LIVING 7.75 0:DiseaseFree 7.75 -TCGA-D8-A1X7 0:LIVING 2.79 0:DiseaseFree 2.79 -TCGA-D8-A1X8 0:LIVING 8.94 0:DiseaseFree 8.94 -TCGA-D8-A1X9 0:LIVING 12.48 0:DiseaseFree 12.48 -TCGA-D8-A1XA 0:LIVING 9 0:DiseaseFree 9 -TCGA-D8-A1XB 0:LIVING 6.6 0:DiseaseFree 6.6 -TCGA-D8-A1XC 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-D8-A1XD 0:LIVING 5.09 0:DiseaseFree 5.09 -TCGA-D8-A1XF 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-D8-A1XG 0:LIVING 6.44 0:DiseaseFree 6.44 -TCGA-D8-A1XJ 0:LIVING 11.56 0:DiseaseFree 11.56 -TCGA-D8-A1XK 0:LIVING 10.71 0:DiseaseFree 10.71 -TCGA-D8-A1XL 0:LIVING 10.48 0:DiseaseFree 10.48 -TCGA-D8-A1XM 0:LIVING 7.16 0:DiseaseFree 7.16 -TCGA-D8-A1XQ 0:LIVING 5.82 0:DiseaseFree 5.82 -TCGA-D8-A1XR 0:LIVING 5.52 0:DiseaseFree 5.52 -TCGA-D8-A1XU 0:LIVING 4.9 0:DiseaseFree 4.9 -TCGA-D8-A1XV 0:LIVING 4.8 0:DiseaseFree 4.8 -TCGA-D8-A1XW 0:LIVING 3.84 0:DiseaseFree 3.84 -TCGA-D8-A1XY 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-D8-A1XZ 0:LIVING 3.94 0:DiseaseFree 3.94 -TCGA-D8-A1Y0 0:LIVING 5.45 0:DiseaseFree 5.45 -TCGA-D8-A1Y1 0:LIVING 3.78 0:DiseaseFree 3.78 -TCGA-D8-A1Y2 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-D8-A1Y3 0:LIVING 4.07 0:DiseaseFree 4.07 -TCGA-D8-A27E 0:LIVING 5.98 0:DiseaseFree 5.98 -TCGA-D8-A27F 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-D8-A27G 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-D8-A27H 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-D8-A27I 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-D8-A27K 0:LIVING 3.88 0:DiseaseFree 3.88 -TCGA-D8-A27L 0:LIVING 4.11 0:DiseaseFree 4.11 -TCGA-D8-A27M 0:LIVING 4.73 0:DiseaseFree 4.73 -TCGA-D8-A27N 0:LIVING 4.76 0:DiseaseFree 4.76 -TCGA-D8-A27P 0:LIVING 0.72 0:DiseaseFree 0.72 -TCGA-D8-A27R 0:LIVING 2.96 0:DiseaseFree 2.96 -TCGA-D8-A27T 0:LIVING 4.44 0:DiseaseFree 4.44 -TCGA-D8-A27V 0:LIVING 2.4 0:DiseaseFree 2.4 -TCGA-D8-A27W 0:LIVING 0.49 0:DiseaseFree 0.49 -TCGA-E2-A1IE 0:LIVING 32.29 0:DiseaseFree 32.29 -TCGA-E2-A1IF 0:LIVING 31.41 0:DiseaseFree 31.41 -TCGA-E2-A1IG 0:LIVING 24.8 0:DiseaseFree 24.8 -TCGA-E2-A1IH 0:LIVING 21.62 0:DiseaseFree 21.62 -TCGA-E2-A1II 0:LIVING 27.93 0:DiseaseFree 27.93 -TCGA-E2-A1IJ 0:LIVING 23.82 0:DiseaseFree 23.82 -TCGA-E2-A1IK 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-E2-A1IL 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E2-A1IN 0:LIVING 12.88 0:DiseaseFree 12.88 -TCGA-E2-A1IO 0:LIVING 14.72 0:DiseaseFree 14.72 -TCGA-E2-A1IP 0:LIVING 14.03 0:DiseaseFree 14.03 -TCGA-E2-A1IU 0:LIVING 4.17 0:DiseaseFree 4.17 -TCGA-E2-A1L6 0:LIVING 43.1 0:DiseaseFree 43.1 -TCGA-E2-A1L7 0:LIVING 20.8 0:DiseaseFree 20.8 -TCGA-E2-A1L8 0:LIVING 33.35 0:DiseaseFree 33.35 -TCGA-E2-A1L9 0:LIVING 12.75 0:DiseaseFree 12.75 -TCGA-E2-A1LA 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-E2-A1LB 0:LIVING 31.93 0:DiseaseFree 31.93 -TCGA-E2-A1LG 0:LIVING 11.5 0:DiseaseFree 11.5 -TCGA-E2-A1LH 0:LIVING 94.45 0:DiseaseFree 94.45 -TCGA-E2-A1LI 0:LIVING 90.35 0:DiseaseFree 90.35 -TCGA-E2-A1LL 0:LIVING 33.31 0:DiseaseFree 33.31 -TCGA-E2-A1LS 0:LIVING 7.85 0:DiseaseFree 7.85 -TCGA-E9-A1N3 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N4 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N5 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N6 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N8 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N9 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NA 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NC 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1ND 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NE 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NF 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NG 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NH 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NI 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1QZ 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R0 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R2 0:LIVING 0.62 0:DiseaseFree 0.62 -TCGA-E9-A1R3 0:LIVING 2.1 0:DiseaseFree 2.1 -TCGA-E9-A1R4 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1R5 0:LIVING 1.38 0:DiseaseFree 1.38 -TCGA-E9-A1R6 0:LIVING 2.76 0:DiseaseFree 2.76 -TCGA-E9-A1R7 0:LIVING 1.12 0:DiseaseFree 1.12 -TCGA-E9-A1RA 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1RB 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A1RC 0:LIVING 40.34 0:DiseaseFree 40.34 -TCGA-E9-A1RD 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A1RE 0:LIVING 1.54 0:DiseaseFree 1.54 -TCGA-E9-A1RF 0:LIVING 1.25 0:DiseaseFree 1.25 -TCGA-E9-A1RG 0:LIVING 1.15 0:DiseaseFree 1.15 -TCGA-E9-A1RH 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E9-A1RI 0:LIVING 1.58 0:DiseaseFree 1.58 -TCGA-E9-A226 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-E9-A227 0:LIVING 0.79 0:DiseaseFree 0.79 -TCGA-E9-A228 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A229 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22A 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22B 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22D 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22E 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22G 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22H 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A243 0:LIVING 1.41 0:DiseaseFree 1.41 -TCGA-E9-A244 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A245 0:LIVING 0.82 0:DiseaseFree 0.82 -TCGA-E9-A247 0:LIVING 0.39 0:DiseaseFree 0.39 -TCGA-E9-A248 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A249 0:LIVING 0.92 0:DiseaseFree 0.92 -TCGA-E9-A24A 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-EW-A1IW 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1IX 0:LIVING 35.55 0:DiseaseFree 35.55 -TCGA-EW-A1IY 0:LIVING 8.48 0:DiseaseFree 8.48 -TCGA-EW-A1IZ 0:LIVING 8.54 0:DiseaseFree 8.54 -TCGA-EW-A1J1 0:LIVING 9.26 0:DiseaseFree 9.26 -TCGA-EW-A1J2 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1J3 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1J5 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-EW-A1J6 0:LIVING 19.55 0:DiseaseFree 19.55 -TCGA-EW-A1OV 0:LIVING 17.15 0:DiseaseFree 17.15 -TCGA-EW-A1OW 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-EW-A1OX 0:LIVING 18.46 0:DiseaseFree 18.46 -TCGA-EW-A1OY 0:LIVING 19.48 0:DiseaseFree 19.48 -TCGA-EW-A1OZ 0:LIVING 30.91 0:DiseaseFree 30.91 -TCGA-EW-A1P0 0:LIVING 36.83 1:Recurred/Progressed [Not Available] -TCGA-EW-A1P1 0:LIVING 30.19 1:Recurred/Progressed [Not Available] -TCGA-EW-A1P3 0:LIVING 32.43 0:DiseaseFree 32.43 -TCGA-EW-A1P4 0:LIVING 16.46 0:DiseaseFree 16.46 -TCGA-EW-A1P5 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-EW-A1P6 0:LIVING 10.25 0:DiseaseFree 10.25 -TCGA-EW-A1P7 0:LIVING 20.86 0:DiseaseFree 20.86 -TCGA-EW-A1PA 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-EW-A1PB 0:LIVING 19.97 0:DiseaseFree 19.97 -TCGA-EW-A1PD 0:LIVING 5.72 0:DiseaseFree 5.72 -TCGA-EW-A1PE 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PF 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PG 0:LIVING 28.75 0:DiseaseFree 28.75 -TCGA-EW-A1PH 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A2FS [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-EW-A2FV [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-EW-A2FW [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-GM-A2DA 0:LIVING 194.13 1:Recurred/Progressed [Not Available] -TCGA-GM-A2DB 0:LIVING 53.06 0:DiseaseFree 53.06 -TCGA-GM-A2DC 0:LIVING 53.49 0:DiseaseFree 53.49 -TCGA-GM-A2DD 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-GM-A2DF 0:LIVING 42.68 0:DiseaseFree 42.68 -TCGA-GM-A2DH 0:LIVING 42.25 0:DiseaseFree 42.25 -TCGA-GM-A2DI 0:LIVING 61.86 0:DiseaseFree 61.86 -TCGA-GM-A2DK 0:LIVING 62.29 0:DiseaseFree 62.29 -TCGA-GM-A2DL 0:LIVING 90.74 0:DiseaseFree 90.74 -TCGA-GM-A2DM 0:LIVING 76.58 0:DiseaseFree 76.58 -TCGA-GM-A2DN 0:LIVING 77.27 0:DiseaseFree 77.27 -TCGA-GM-A2DO 0:LIVING 53.29 0:DiseaseFree 53.29 -TCGA-AR-A24W [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2B8 [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2FF [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2FB [Not Available] [Not Available] [Not Available] [Not Available] -TEST-A2FG [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-GI-A2C8 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-E9-A295 [Not Available] [Not Available] [Not Available] [Not Available] -TCGA-A2-A0T2 [Not Available] [Not Available] [Not Available] [Not Available] diff --git a/core/src/test/scripts/test_data/study_quotes/data_samples.txt b/core/src/test/scripts/test_data/study_quotes/data_samples.txt deleted file mode 100644 index 29643ea2998..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/data_samples.txt +++ /dev/null @@ -1,831 +0,0 @@ -#Patient Identifier Sample Identifier Subtype -#Patient identifier Sample identifier Subtype description -#STRING STRING STRING -#1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE -TCGA-A2-A04P TCGA-A2-A04P-01 bas"al-like -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like" -TCGA-A2-A0CM TCGA-A2-A0CM-01 "basal-like -TCGA-AR-A1AR "TCGA-AR-A1AR-01" basal-like -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like -TCGA-B6-A0I6 "TCGA-B6-A0I6-01 "NA" -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like -TCGA-A7-A13E TCGA-A7-A13E-01 -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like -TCGA-D8-A142 TCGA-D8-A142-01 basal-like -TCGA-D8-A143 TCGA-D8-A143-01 NA -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like -TCGA-A2-A04U TCGA-A2-A04U-01 NA -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like -TCGA-A2-A04T TCGA-A2-A04T-01 NA -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like -TCGA-AO-A128 TCGA-AO-A128-01 NA -TCGA-AO-A129 TCGA-AO-A129-01 basal-like -TCGA-AO-A124 TCGA-AO-A124-01 basal-like -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like -TCGA-BH-A18G TCGA-BH-A18G-01 NA -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like -TCGA-C8-A131 TCGA-C8-A131-01 basal-like -TCGA-C8-A134 TCGA-C8-A134-01 basal-like -TCGA-D8-A147 TCGA-D8-A147-01 basal-like -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like -TCGA-E2-A150 TCGA-E2-A150-01 basal-like -TCGA-E2-A158 TCGA-E2-A158-01 basal-like -TCGA-E2-A159 TCGA-E2-A159-01 basal-like -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A -TCGA-A7-A0CD TCGA-A7-A0CD-01 Luminal A -TCGA-D8-A145 TCGA-D8-A145-01 Luminal A -TCGA-BH-A0HP TCGA-BH-A0HP-01 Luminal A -TCGA-BH-A0DK TCGA-BH-A0DK-01 Luminal A -TCGA-BH-A0E2 TCGA-BH-A0E2-01 Luminal A -TCGA-A2-A0YI TCGA-A2-A0YI-01 Luminal A -TCGA-A2-A0YL TCGA-A2-A0YL-01 Luminal A -TCGA-AO-A0JG TCGA-AO-A0JG-01 Luminal A -TCGA-A2-A0YF TCGA-A2-A0YF-01 Luminal A -TCGA-BH-A0DP TCGA-BH-A0DP-01 Luminal A -TCGA-BH-A0E1 TCGA-BH-A0E1-01 Luminal A -TCGA-A2-A0T5 TCGA-A2-A0T5-01 Luminal A -TCGA-A2-A0T6 TCGA-A2-A0T6-01 Luminal A -TCGA-BH-A0HI TCGA-BH-A0HI-01 Luminal A -TCGA-A2-A0T7 TCGA-A2-A0T7-01 Luminal A -TCGA-BH-A0BJ TCGA-BH-A0BJ-01 Luminal A -TCGA-BH-A0H7 TCGA-BH-A0H7-01 Luminal A -TCGA-BH-A0HF TCGA-BH-A0HF-01 Luminal A -TCGA-BH-A0EB TCGA-BH-A0EB-01 Luminal A -TCGA-BH-A0H6 TCGA-BH-A0H6-01 Luminal A -TCGA-A2-A0YD TCGA-A2-A0YD-01 Luminal A -TCGA-BH-A0HB TCGA-BH-A0HB-01 Luminal A -TCGA-BH-A0HX TCGA-BH-A0HX-01 Luminal A -TCGA-AO-A12H TCGA-AO-A12H-01 Luminal A -TCGA-E2-A10E TCGA-E2-A10E-01 Luminal A -TCGA-A2-A0D3 TCGA-A2-A0D3-01 Luminal A -TCGA-E2-A10F TCGA-E2-A10F-01 Luminal A -TCGA-AO-A03V TCGA-AO-A03V-01 Luminal A -TCGA-A2-A0EW TCGA-A2-A0EW-01 Luminal A -TCGA-BH-A0GY TCGA-BH-A0GY-01 Luminal A -TCGA-A2-A0EV TCGA-A2-A0EV-01 Luminal A -TCGA-BH-A0BC TCGA-BH-A0BC-01 Luminal A -TCGA-A2-A0YC TCGA-A2-A0YC-01 Luminal A -TCGA-A2-A0EU TCGA-A2-A0EU-01 Luminal A -TCGA-A2-A0ET TCGA-A2-A0ET-01 Luminal A -TCGA-A2-A04Y TCGA-A2-A04Y-01 Luminal A -TCGA-BH-A0HQ TCGA-BH-A0HQ-01 Luminal A -TCGA-A2-A0ES TCGA-A2-A0ES-01 Luminal A -TCGA-BH-A0BA TCGA-BH-A0BA-01 Luminal A -TCGA-E2-A10B TCGA-E2-A10B-01 Luminal A -TCGA-BH-A0B1 TCGA-BH-A0B1-01 Luminal A -TCGA-BH-A0DH TCGA-BH-A0DH-01 Luminal A -TCGA-BH-A0B4 TCGA-BH-A0B4-01 Luminal A -TCGA-BH-A0H9 TCGA-BH-A0H9-01 Luminal A -TCGA-AO-A0J9 TCGA-AO-A0J9-01 Luminal A -TCGA-AO-A12G TCGA-AO-A12G-01 Luminal A -TCGA-A2-A0SY TCGA-A2-A0SY-01 Luminal A -TCGA-BH-A0E7 TCGA-BH-A0E7-01 Luminal A -TCGA-AO-A03M TCGA-AO-A03M-01 Luminal A -TCGA-BH-A0BV TCGA-BH-A0BV-01 Luminal A -TCGA-BH-A0B8 TCGA-BH-A0B8-01 Luminal A -TCGA-A2-A0CZ TCGA-A2-A0CZ-01 Luminal A -TCGA-A2-A0SU TCGA-A2-A0SU-01 Luminal A -TCGA-AO-A12E TCGA-AO-A12E-01 Luminal A -TCGA-E2-A106 TCGA-E2-A106-01 Luminal A -TCGA-A2-A0CV TCGA-A2-A0CV-01 Luminal A -TCGA-AO-A12C TCGA-AO-A12C-01 Luminal A -TCGA-B6-A0RG TCGA-B6-A0RG-01 Luminal A -TCGA-A2-A0CS TCGA-A2-A0CS-01 Luminal A -TCGA-A2-A0EO TCGA-A2-A0EO-01 Luminal A -TCGA-A2-A0CQ TCGA-A2-A0CQ-01 Luminal A -TCGA-A2-A0EN TCGA-A2-A0EN-01 Luminal A -TCGA-AO-A12A TCGA-AO-A12A-01 Luminal A -TCGA-A2-A0CP TCGA-A2-A0CP-01 Luminal A -TCGA-AO-A126 TCGA-AO-A126-01 Luminal A -TCGA-AO-A125 TCGA-AO-A125-01 Luminal A -TCGA-A2-A0EM TCGA-A2-A0EM-01 Luminal A -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A -TCGA-AQ-A04L TCGA-AQ-A04L-01 Luminal A -TCGA-B6-A0IO TCGA-B6-A0IO-01 Luminal A -TCGA-B6-A0IP TCGA-B6-A0IP-01 Luminal A -TCGA-B6-A0WZ TCGA-B6-A0WZ-01 Luminal A -TCGA-B6-A0I5 TCGA-B6-A0I5-01 Luminal A -TCGA-B6-A0RV TCGA-B6-A0RV-01 Luminal A -TCGA-B6-A0RO TCGA-B6-A0RO-01 Luminal A -TCGA-B6-A0RN TCGA-B6-A0RN-01 Luminal A -TCGA-B6-A0WT TCGA-B6-A0WT-01 Luminal A -TCGA-B6-A0IA TCGA-B6-A0IA-01 Luminal A -TCGA-B6-A0RI TCGA-B6-A0RI-01 Luminal A -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A -TCGA-A2-A0EX TCGA-A2-A0EX-01 Luminal A -TCGA-AO-A0JJ TCGA-AO-A0JJ-01 Luminal A -TCGA-E2-A105 TCGA-E2-A105-01 Luminal A -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A -TCGA-A8-A06P TCGA-A8-A06P-01 Luminal A -TCGA-A8-A06T TCGA-A8-A06T-01 Luminal A -TCGA-A8-A06Y TCGA-A8-A06Y-01 Luminal A -TCGA-A8-A07E TCGA-A8-A07E-01 Luminal A -TCGA-A8-A07F TCGA-A8-A07F-01 Luminal A -TCGA-A8-A07G TCGA-A8-A07G-01 Luminal A -TCGA-A8-A07J TCGA-A8-A07J-01 Luminal A -TCGA-A8-A07P TCGA-A8-A07P-01 Luminal A -TCGA-A8-A083 TCGA-A8-A083-01 Luminal A -TCGA-A8-A086 TCGA-A8-A086-01 Luminal A -TCGA-A8-A08A TCGA-A8-A08A-01 Luminal A -TCGA-A8-A08C TCGA-A8-A08C-01 Luminal A -TCGA-A8-A08O TCGA-A8-A08O-01 Luminal A -TCGA-A8-A08T TCGA-A8-A08T-01 Luminal A -TCGA-A8-A08Z TCGA-A8-A08Z-01 Luminal A -TCGA-A8-A090 TCGA-A8-A090-01 Luminal A -TCGA-A8-A091 TCGA-A8-A091-01 Luminal A -TCGA-A8-A093 TCGA-A8-A093-01 Luminal A -TCGA-A8-A099 TCGA-A8-A099-01 Luminal A -TCGA-A8-A09A TCGA-A8-A09A-01 Luminal A -TCGA-A8-A09B TCGA-A8-A09B-01 Luminal A -TCGA-A8-A09T TCGA-A8-A09T-01 Luminal A -TCGA-A8-A09V TCGA-A8-A09V-01 Luminal A -TCGA-A8-A0A1 TCGA-A8-A0A1-01 Luminal A -TCGA-A8-A0A2 TCGA-A8-A0A2-01 Luminal A -TCGA-A8-A0A4 TCGA-A8-A0A4-01 Luminal A -TCGA-A8-A0A6 TCGA-A8-A0A6-01 Luminal A -TCGA-A8-A0AD TCGA-A8-A0AD-01 Luminal A -TCGA-AN-A03X TCGA-AN-A03X-01 Luminal A -TCGA-AN-A046 TCGA-AN-A046-01 Luminal A -TCGA-AN-A04A TCGA-AN-A04A-01 Luminal A -TCGA-AN-A0FD TCGA-AN-A0FD-01 Luminal A -TCGA-AN-A0FN TCGA-AN-A0FN-01 Luminal A -TCGA-AN-A0FS TCGA-AN-A0FS-01 Luminal A -TCGA-AN-A0FT TCGA-AN-A0FT-01 Luminal A -TCGA-AN-A0FW TCGA-AN-A0FW-01 Luminal A -TCGA-AN-A0FZ TCGA-AN-A0FZ-01 Luminal A -TCGA-AN-A0XL TCGA-AN-A0XL-01 Luminal A -TCGA-AN-A0XN TCGA-AN-A0XN-01 Luminal A -TCGA-AN-A0XO TCGA-AN-A0XO-01 Luminal A -TCGA-AN-A0XP TCGA-AN-A0XP-01 Luminal A -TCGA-AN-A0XS TCGA-AN-A0XS-01 Luminal A -TCGA-AN-A0XT TCGA-AN-A0XT-01 Luminal A -TCGA-AN-A0XV TCGA-AN-A0XV-01 Luminal A -TCGA-AR-A0TW TCGA-AR-A0TW-01 Luminal A -TCGA-AR-A1AK TCGA-AR-A1AK-01 Luminal A -TCGA-AR-A1AL TCGA-AR-A1AL-01 Luminal A -TCGA-AR-A1AN TCGA-AR-A1AN-01 Luminal A -TCGA-AR-A1AP TCGA-AR-A1AP-01 Luminal A -TCGA-AR-A1AS TCGA-AR-A1AS-01 Luminal A -TCGA-AR-A1AU TCGA-AR-A1AU-01 Luminal A -TCGA-AR-A1AW TCGA-AR-A1AW-01 Luminal A -TCGA-AR-A1AX TCGA-AR-A1AX-01 Luminal A -TCGA-BH-A0AZ TCGA-BH-A0AZ-01 Luminal A -TCGA-BH-A0B0 TCGA-BH-A0B0-01 Luminal A -TCGA-BH-A0BM TCGA-BH-A0BM-01 Luminal A -TCGA-BH-A0BO TCGA-BH-A0BO-01 Luminal A -TCGA-BH-A0BP TCGA-BH-A0BP-01 Luminal A -TCGA-BH-A0BQ TCGA-BH-A0BQ-01 Luminal A -TCGA-BH-A0BR TCGA-BH-A0BR-01 Luminal A -TCGA-BH-A0BS TCGA-BH-A0BS-01 Luminal A -TCGA-BH-A0BT TCGA-BH-A0BT-01 Luminal A -TCGA-BH-A0C1 TCGA-BH-A0C1-01 Luminal A -TCGA-BH-A0DE TCGA-BH-A0DE-01 Luminal A -TCGA-BH-A0DG TCGA-BH-A0DG-01 Luminal A -TCGA-BH-A0DI TCGA-BH-A0DI-01 Luminal A -TCGA-BH-A0DO TCGA-BH-A0DO-01 Luminal A -TCGA-BH-A0DT TCGA-BH-A0DT-01 Luminal A -TCGA-BH-A0DX TCGA-BH-A0DX-01 Luminal A -TCGA-BH-A0E9 TCGA-BH-A0E9-01 Luminal A -TCGA-BH-A0EI TCGA-BH-A0EI-01 Luminal A -TCGA-BH-A0H3 TCGA-BH-A0H3-01 Luminal A -TCGA-BH-A0H5 TCGA-BH-A0H5-01 Luminal A -TCGA-BH-A0HA TCGA-BH-A0HA-01 Luminal A -TCGA-BH-A0W4 TCGA-BH-A0W4-01 Luminal A -TCGA-BH-A0W5 TCGA-BH-A0W5-01 Luminal A -TCGA-BH-A0W7 TCGA-BH-A0W7-01 Luminal A -TCGA-BH-A18H TCGA-BH-A18H-01 Luminal A -TCGA-BH-A18I TCGA-BH-A18I-01 Luminal A -TCGA-C8-A12N TCGA-C8-A12N-01 Luminal A -TCGA-C8-A12O TCGA-C8-A12O-01 Luminal A -TCGA-C8-A12Y TCGA-C8-A12Y-01 Luminal A -TCGA-C8-A132 TCGA-C8-A132-01 Luminal A -TCGA-C8-A133 TCGA-C8-A133-01 Luminal A -TCGA-C8-A1HI TCGA-C8-A1HI-01 Luminal A -TCGA-D8-A141 TCGA-D8-A141-01 Luminal A -TCGA-E2-A14Q TCGA-E2-A14Q-01 Luminal A -TCGA-E2-A14T TCGA-E2-A14T-01 Luminal A -TCGA-E2-A14Z TCGA-E2-A14Z-01 Luminal A -TCGA-E2-A153 TCGA-E2-A153-01 Luminal A -TCGA-E2-A154 TCGA-E2-A154-01 Luminal A -TCGA-E2-A156 TCGA-E2-A156-01 Luminal A -TCGA-E2-A15C TCGA-E2-A15C-01 Luminal A -TCGA-E2-A15D TCGA-E2-A15D-01 Luminal A -TCGA-E2-A15E TCGA-E2-A15E-01 Luminal A -TCGA-E2-A15F TCGA-E2-A15F-01 Luminal A -TCGA-E2-A15G TCGA-E2-A15G-01 Luminal A -TCGA-E2-A15H TCGA-E2-A15H-01 Luminal A -TCGA-E2-A15I TCGA-E2-A15I-01 Luminal A -TCGA-E2-A15J TCGA-E2-A15J-01 Luminal A -TCGA-E2-A15O TCGA-E2-A15O-01 Luminal A -TCGA-E2-A15P TCGA-E2-A15P-01 Luminal A -TCGA-E2-A15R TCGA-E2-A15R-01 Luminal A -TCGA-E2-A1B1 TCGA-E2-A1B1-01 Luminal A -TCGA-E2-A1B4 TCGA-E2-A1B4-01 Luminal A -TCGA-E2-A1B6 TCGA-E2-A1B6-01 Luminal A -TCGA-E2-A1BC TCGA-E2-A1BC-01 Luminal A -TCGA-E2-A1BD TCGA-E2-A1BD-01 Luminal A -TCGA-A2-A0SV TCGA-A2-A0SV-01 Luminal B -TCGA-AO-A03O TCGA-AO-A03O-01 Luminal B -TCGA-A2-A0SW TCGA-A2-A0SW-01 Luminal B -TCGA-B6-A0WW TCGA-B6-A0WW-01 Luminal B -TCGA-BH-A18J TCGA-BH-A18J-01 Luminal B -TCGA-BH-A18L TCGA-BH-A18L-01 Luminal B -TCGA-A8-A06X TCGA-A8-A06X-01 Luminal B -TCGA-B6-A0IC TCGA-B6-A0IC-01 Luminal B -TCGA-BH-A18U TCGA-BH-A18U-01 Luminal B -TCGA-BH-A1EW TCGA-BH-A1EW-01 Luminal B -TCGA-AR-A0TY TCGA-AR-A0TY-01 Luminal B -TCGA-B6-A0X5 TCGA-B6-A0X5-01 Luminal B -TCGA-B6-A0WV TCGA-B6-A0WV-01 Luminal B -TCGA-B6-A0RL TCGA-B6-A0RL-01 Luminal B -TCGA-AR-A0U2 TCGA-AR-A0U2-01 Luminal B -TCGA-B6-A0IB TCGA-B6-A0IB-01 Luminal B -TCGA-AO-A0J7 TCGA-AO-A0J7-01 Luminal B -TCGA-AO-A0J3 TCGA-AO-A0J3-01 Luminal B -TCGA-D8-A13Y TCGA-D8-A13Y-01 Luminal B -TCGA-A7-A13F TCGA-A7-A13F-01 Luminal B -TCGA-BH-A0HU TCGA-BH-A0HU-01 Luminal B -TCGA-D8-A140 TCGA-D8-A140-01 Luminal B -TCGA-A7-A0CJ TCGA-A7-A0CJ-01 Luminal B -TCGA-AQ-A04H TCGA-AQ-A04H-01 Luminal B -TCGA-BH-A0H0 TCGA-BH-A0H0-01 Luminal B -TCGA-BH-A0BD TCGA-BH-A0BD-01 Luminal B -TCGA-A2-A0T3 TCGA-A2-A0T3-01 Luminal B -TCGA-A2-A0T4 TCGA-A2-A0T4-01 Luminal B -TCGA-A2-A0YH TCGA-A2-A0YH-01 Luminal B -TCGA-A2-A0YG TCGA-A2-A0YG-01 Luminal B -TCGA-A2-A0EY TCGA-A2-A0EY-01 Luminal B -TCGA-A2-A0D4 TCGA-A2-A0D4-01 Luminal B -TCGA-BH-A0AY TCGA-BH-A0AY-01 Luminal B -TCGA-E2-A107 TCGA-E2-A107-01 Luminal B -TCGA-AO-A0JI TCGA-AO-A0JI-01 Luminal B -TCGA-E2-A10C TCGA-E2-A10C-01 Luminal B -TCGA-E2-A10A TCGA-E2-A10A-01 Luminal B -TCGA-BH-A0C0 TCGA-BH-A0C0-01 Luminal B -TCGA-E2-A109 TCGA-E2-A109-01 Luminal B -TCGA-AO-A0JC TCGA-AO-A0JC-01 Luminal B -TCGA-BH-A0HW TCGA-BH-A0HW-01 Luminal B -TCGA-AO-A0JD TCGA-AO-A0JD-01 Luminal B -TCGA-AO-A0JM TCGA-AO-A0JM-01 Luminal B -TCGA-A2-A0CW TCGA-A2-A0CW-01 Luminal B -TCGA-A2-A0ER TCGA-A2-A0ER-01 Luminal B -TCGA-A2-A0CT TCGA-A2-A0CT-01 Luminal B -TCGA-AO-A12B TCGA-AO-A12B-01 Luminal B -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B -TCGA-B6-A0IM TCGA-B6-A0IM-01 Luminal B -TCGA-AO-A03P TCGA-AO-A03P-01 Luminal B -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B -TCGA-A8-A06N TCGA-A8-A06N-01 Luminal B -TCGA-A8-A06O TCGA-A8-A06O-01 Luminal B -TCGA-A8-A06Q TCGA-A8-A06Q-01 Luminal B -TCGA-A8-A06R TCGA-A8-A06R-01 Luminal B -TCGA-A8-A06Z TCGA-A8-A06Z-01 Luminal B -TCGA-A8-A079 TCGA-A8-A079-01 Luminal B -TCGA-A8-A07L TCGA-A8-A07L-01 Luminal B -TCGA-A8-A07S TCGA-A8-A07S-01 Luminal B -TCGA-A8-A07W TCGA-A8-A07W-01 Luminal B -TCGA-A8-A07Z TCGA-A8-A07Z-01 Luminal B -TCGA-A8-A082 TCGA-A8-A082-01 Luminal B -TCGA-A8-A084 TCGA-A8-A084-01 Luminal B -TCGA-A8-A085 TCGA-A8-A085-01 Luminal B -TCGA-A8-A08F TCGA-A8-A08F-01 Luminal B -TCGA-A8-A08G TCGA-A8-A08G-01 Luminal B -TCGA-A8-A08I TCGA-A8-A08I-01 Luminal B -TCGA-A8-A08P TCGA-A8-A08P-01 Luminal B -TCGA-A8-A095 TCGA-A8-A095-01 Luminal B -TCGA-A8-A096 TCGA-A8-A096-01 Luminal B -TCGA-A8-A097 TCGA-A8-A097-01 Luminal B -TCGA-A8-A09C TCGA-A8-A09C-01 Luminal B -TCGA-A8-A09D TCGA-A8-A09D-01 Luminal B -TCGA-A8-A09I TCGA-A8-A09I-01 Luminal B -TCGA-A8-A09M TCGA-A8-A09M-01 Luminal B -TCGA-A8-A09N TCGA-A8-A09N-01 Luminal B -TCGA-A8-A09Q TCGA-A8-A09Q-01 Luminal B -TCGA-A8-A09R TCGA-A8-A09R-01 Luminal B -TCGA-A8-A09W TCGA-A8-A09W-01 Luminal B -TCGA-A8-A09Z TCGA-A8-A09Z-01 Luminal B -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B -TCGA-AO-A03U TCGA-AO-A03U-01 NA -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA -TCGA-AO-A03R TCGA-AO-A03R-01 NA -TCGA-AO-A03T TCGA-AO-A03T-01 NA -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA -TCGA-BH-A203 TCGA-BH-A203-01 NA -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA -TCGA-BH-A208 TCGA-BH-A208-01 NA -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA -TCGA-BH-A204 TCGA-BH-A204-01 NA -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA -TCGA-AR-A256 TCGA-AR-A256-01 NA -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA -TCGA-BH-A209 TCGA-BH-A209-01 NA -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA -TCGA-A7-A13G TCGA-A7-A13G-01 NA -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA -TCGA-A7-A26E TCGA-A7-A26E-01 NA -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA -TCGA-A2-A259 TCGA-A2-A259-01 NA -TCGA-A2-A25A TCGA-A2-A25A-01 NA -TCGA-A2-A25B TCGA-A2-A25B-01 NA -TCGA-A2-A25C TCGA-A2-A25C-01 NA -TCGA-A2-A25D TCGA-A2-A25D-01 NA -TCGA-A2-A25E TCGA-A2-A25E-01 NA -TCGA-A2-A25F TCGA-A2-A25F-01 NA -TCGA-A7-A26F TCGA-A7-A26F-01 NA -TCGA-A7-A26G TCGA-A7-A26G-01 NA -TCGA-A7-A26H TCGA-A7-A26H-01 NA -TCGA-A7-A26I TCGA-A7-A26I-01 NA -TCGA-A7-A26J TCGA-A7-A26J-01 NA -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B -TEST-A23C TEST-A23C-01 NA -TEST-A23E TEST-A23E-01 NA -TEST-A23H TEST-A23H-01 NA -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA -TCGA-AR-A24H TCGA-AR-A24H-01 NA -TCGA-AR-A24K TCGA-AR-A24K-01 NA -TCGA-AR-A24L TCGA-AR-A24L-01 NA -TCGA-AR-A24M TCGA-AR-A24M-01 NA -TCGA-AR-A24N TCGA-AR-A24N-01 NA -TCGA-AR-A24O TCGA-AR-A24O-01 NA -TCGA-AR-A24P TCGA-AR-A24P-01 NA -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA -TCGA-AR-A24R TCGA-AR-A24R-01 NA -TCGA-AR-A24S TCGA-AR-A24S-01 NA -TCGA-AR-A24T TCGA-AR-A24T-01 NA -TCGA-AR-A24U TCGA-AR-A24U-01 NA -TCGA-AR-A24V TCGA-AR-A24V-01 NA -TCGA-AR-A24X TCGA-AR-A24X-01 NA -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA -TCGA-AR-A250 TCGA-AR-A250-01 NA -TCGA-AR-A251 TCGA-AR-A251-01 NA -TCGA-AR-A252 TCGA-AR-A252-01 NA -TCGA-AR-A254 TCGA-AR-A254-01 NA -TCGA-AR-A255 TCGA-AR-A255-01 NA -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA -TCGA-BH-A201 TCGA-BH-A201-01 NA -TCGA-BH-A202 TCGA-BH-A202-01 NA -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA -TCGA-C8-A26V TCGA-C8-A26V-01 NA -TCGA-C8-A26W TCGA-C8-A26W-01 NA -TCGA-C8-A26X TCGA-C8-A26X-01 NA -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA -TCGA-C8-A273 TCGA-C8-A273-01 NA -TCGA-C8-A274 TCGA-C8-A274-01 NA -TCGA-C8-A275 TCGA-C8-A275-01 NA -TCGA-C8-A278 TCGA-C8-A278-01 NA -TCGA-C8-A27A TCGA-C8-A27A-01 NA -TCGA-C8-A27B TCGA-C8-A27B-01 NA -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA -TCGA-D8-A27E TCGA-D8-A27E-01 NA -TCGA-D8-A27F TCGA-D8-A27F-01 NA -TCGA-D8-A27G TCGA-D8-A27G-01 NA -TCGA-D8-A27H TCGA-D8-A27H-01 NA -TCGA-D8-A27I TCGA-D8-A27I-01 NA -TCGA-D8-A27K TCGA-D8-A27K-01 NA -TCGA-D8-A27L TCGA-D8-A27L-01 NA -TCGA-D8-A27M TCGA-D8-A27M-01 NA -TCGA-D8-A27N TCGA-D8-A27N-01 NA -TCGA-D8-A27P TCGA-D8-A27P-01 NA -TCGA-D8-A27R TCGA-D8-A27R-01 NA -TCGA-D8-A27T TCGA-D8-A27T-01 NA -TCGA-D8-A27V TCGA-D8-A27V-01 NA -TCGA-D8-A27W TCGA-D8-A27W-01 NA -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA -TCGA-E2-A1II TCGA-E2-A1II-01 NA -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA -TCGA-E9-A226 TCGA-E9-A226-01 NA -TCGA-E9-A227 TCGA-E9-A227-01 NA -TCGA-E9-A228 TCGA-E9-A228-01 NA -TCGA-E9-A229 TCGA-E9-A229-01 NA -TCGA-E9-A22A TCGA-E9-A22A-01 NA -TCGA-E9-A22B TCGA-E9-A22B-01 NA -TCGA-E9-A22D TCGA-E9-A22D-01 NA -TCGA-E9-A22E TCGA-E9-A22E-01 NA -TCGA-E9-A22G TCGA-E9-A22G-01 NA -TCGA-E9-A22H TCGA-E9-A22H-01 NA -TCGA-E9-A243 TCGA-E9-A243-01 NA -TCGA-E9-A244 TCGA-E9-A244-01 NA -TCGA-E9-A245 TCGA-E9-A245-01 NA -TCGA-E9-A247 TCGA-E9-A247-01 NA -TCGA-E9-A248 TCGA-E9-A248-01 NA -TCGA-E9-A249 TCGA-E9-A249-01 NA -TCGA-E9-A24A TCGA-E9-A24A-01 NA -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA -TCGA-AR-A24W TCGA-AR-A24W-01 NA -TEST-A2B8 TEST-A2B8-01 NA -TEST-A2FF TEST-A2FF-01 NA -TEST-A2FB TEST-A2FB-01 NA -TEST-A2FG TEST-A2FG-01 NA -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA -TCGA-E9-A295 TCGA-E9-A295-01 NA -TCGA-E2-A15E TCGA-E2-A15E-06 NA -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA diff --git a/core/src/test/scripts/test_data/study_quotes/meta_CNA.txt b/core/src/test/scripts/test_data/study_quotes/meta_CNA.txt deleted file mode 100644 index e8499af064a..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/meta_CNA.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: COPY_NUMBER_ALTERATION -datatype: DISCRETE -stable_id: gistic -show_profile_in_analysis_tab: true -profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification. -profile_name: Putative copy-number alterations from GISTIC -data_filename: data_CNA.txt diff --git a/core/src/test/scripts/test_data/study_quotes/meta_mutations_extended.txt b/core/src/test/scripts/test_data/study_quotes/meta_mutations_extended.txt deleted file mode 100644 index 813510be072..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/meta_mutations_extended.txt +++ /dev/null @@ -1,9 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations -data_filename: brca_tcga_pub.maf -swissprot_identifier: name diff --git a/core/src/test/scripts/test_data/study_quotes/meta_patients.txt b/core/src/test/scripts/test_data/study_quotes/meta_patients.txt deleted file mode 100644 index 678f148707d..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/meta_patients.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: CLINICAL -datatype: PATIENT_ATTRIBUTES -data_filename: data_patients.txt diff --git a/core/src/test/scripts/test_data/study_quotes/meta_samples.txt b/core/src/test/scripts/test_data/study_quotes/meta_samples.txt deleted file mode 100644 index 4ec275f30d4..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/meta_samples.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: study_es_0 -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_quotes/meta_study.txt b/core/src/test/scripts/test_data/study_quotes/meta_study.txt deleted file mode 100644 index a6cfc9cc22f..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/meta_study.txt +++ /dev/null @@ -1,8 +0,0 @@ -type_of_cancer: brca -cancer_study_identifier: study_es_0 -name: Test study es_0 -description: Test study es_0 -citation: The Hyve -pmid: 23000897 -groups: PUBLIC;GDAC;SU2C-PI3K -add_global_case_list: true \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_quotes/result_report.html b/core/src/test/scripts/test_data/study_quotes/result_report.html deleted file mode 100644 index 76c1ad842e6..00000000000 --- a/core/src/test/scripts/test_data/study_quotes/result_report.html +++ /dev/null @@ -1,990 +0,0 @@ - - - - - - - - - - - - - cBioPortal validation report: study in 'test_data/study_quotes/' - - - - - -
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    cBioPortal validation report

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    Study directory:
    test_data/study_quotes/

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    For details, please see the documentation on file formats supported by cBioPortal

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    cBioPortal version unknown -- offline instance

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    Debug––Reading portal information from test_data/api_json_system_tests/cancer-types.json–
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    Debug––Reading portal information from test_data/api_json_system_tests/genesets_version.json–
    Debug––Reading portal information from test_data/api_json_system_tests/gene-panels.json–
    Debug––Reading portal information from test_data/api_json_system_tests/genesaliases.json–
    Debug––Validating case lists–
    Info––Validation of case list folder complete–
    Info––Validation complete–
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    Warning––Found quotation marks around field(s) in the first rows of the file. Fields and values surrounded by quotation marks might be incorrectly loaded (i.e. with the quotation marks included as part of the value)quotation marks of type: ["]
    Error4, 56The end position of this variant is not an integer"46707888, "116247760"
    Info7, 9, 14–Line will not be loaded due to the variant classification filter. Filtered types: [Silent, Intron, 3'UTR, 3'Flank, 5'UTR, 5'Flank, IGR, RNA]Silent
    Error84The reference genome in column NCBI_Build does not correspond with the reference genome specified for this study (GRCh37)GRCh37"
    Warning8–Value in 'Verification_Status' not in MAF format"Unknown
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    Error––Sample ID not defined in clinical file"TCGA-A1-A0SE-01", "TCGA-A1-A0SF-01, TCGA-AR-A1AR-01
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    Error1315Sample ID not defined in clinical fileTCGA-AR-A1AR-01
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    Error19, 243, 5
    Column names: OS_MONTHS, DFS_MONTHS    		Value of numeric attribute is not a real number"8.77", "12.25, 12.25"
    Error4321PATIENT_ID and SAMPLE_ID can only contain letters, numbers, points, underscores and/or hyphens"TCGA-BH-A0HW"
    Warning4321Clinical data defined for a patient with no samples"TCGA-BH-A0HW"
    Warning––Missing clinical data for a patient associated with samplesTCGA-BH-A0HW
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    Error9, 122PATIENT_ID and SAMPLE_ID can only contain letters, numbers, points, underscores and/or hyphens"TCGA-AR-A1AR-01", "TCGA-B6-A0I6-01
    Info––Validation of file complete–
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    Info––No reference genome specified -- using default (hg19)–
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    Legend

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    - Click on a filename below to see a table of messages about the data - in the file. The colors in the tables have the following meanings: -

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    ErrorError: cBioPortal will not know how to load this, please revise or remove
    WarningWarning: possible cause of confusion, please check whether this is intended
    InfoInfo: this looks good, no action required
    DebugVerbose output: details on the progress of the validation script
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    - - \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_various_issues/brca_tcga_pub.maf b/core/src/test/scripts/test_data/study_various_issues/brca_tcga_pub.maf deleted file mode 100644 index 10cbf4ea306..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/brca_tcga_pub.maf +++ /dev/null @@ -1,16 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer ONCOTATOR_COSMIC_OVERLAPPING ONCOTATOR_DBSNP_RS ONCOTATOR_DBSNP_VAL_STATUS ONCOTATOR_VARIANT_CLASSIFICATION HGVSp_Short SWISSPROT ONCOTATOR_REFSEQ_MRNA_ID ONCOTATOR_REFSEQ_PROT_ID ONCOTATOR_UNIPROT_ENTRY_NAME ONCOTATOR_UNIPROT_ACCESSION ONCOTATOR_CODON_CHANGE ONCOTATOR_TRANSCRIPT_CHANGE ONCOTATOR_EXON_AFFECTED ONCOTATOR_PROTEIN_POS_START ONCOTATOR_PROTEIN_POS_END ONCOTATOR_VARIANT_CLASSIFICATION_BEST_EFFECT ONCOTATOR_PROTEIN_CHANGE_BEST_EFFECT ONCOTATOR_GENE_SYMBOL_BEST_EFFECT ONCOTATOR_REFSEQ_MRNA_ID_BEST_EFFECT ONCOTATOR_REFSEQ_PROT_ID_BEST_EFFECT ONCOTATOR_UNIPROT_ENTRY_NAME_BEST_EFFECT ONCOTATOR_UNIPROT_ACCESSION_BEST_EFFECT ONCOTATOR_CODON_CHANGE_BEST_EFFECT ONCOTATOR_TRANSCRIPT_CHANGE_BEST_EFFECT ONCOTATOR_EXON_AFFECTED_BEST_EFFECT ONCOTATOR_PROTEIN_POS_START_BEST_EFFECT ONCOTATOR_PROTEIN_POS_END_BEST_EFFECT MA:FImpact MA:FIS MA:protein.change MA:link.MSA MA:link.PDB MA:link.var chromosome_name_WU Protein_position stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU annotation_errors_WU -A1CF 29974 genome.wustl.edu 37 10 52573692 52573692 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0RS-01 TCGA-B6-A0RS-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.D424E Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(1270-1272)GAC>GAA c.1272C>A 10 424 424 Missense_Mutation p.D432E A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(1294-1296)GAC>GAA c.1296C>A 12 432 432 neutral 0.345 D424E getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=298&re=497&var=D424E NA getma.org/?cm=var&var=hg19,10,52573692,G,T&fts=all 10 52573692 52573692 G T SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.1272 p.D424E 0.768 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595854 52595854 + Missense_Mutation SNP G G A novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.A195V Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(583-585)GCG>GTG c.584C>T 6 195 195 Missense_Mutation p.A203V A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(607-609)GCG>GTG c.608C>T 8 203 203 medium 2.955 A195V getma.org/?cm=msa&ty=f&p=A1CF_HUMAN&rb=138&re=203&var=A195V getma.org/pdb.php?prot=A1CF_HUMAN&from=138&to=203&var=A195V getma.org/?cm=var&var=hg19,10,52595854,G,A&fts=all 10 52595854 52595854 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed missense c.584 p.A195V 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A1CF 29974 genome.wustl.edu 37 10 52595937 52595937 + Silent SNP G G A novel unknown TCGA-BH-A18P-01 TCGA-BH-A18P-11 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I167I Q9NQ94 NM_138932 NP_620310 A1CF_HUMAN Q9NQ94 c.(499-501)ATC>ATT c.501C>T 6 167 167 Silent p.I175I A1CF NM_138933 NP_620311 A1CF_HUMAN Q9NQ94 c.(523-525)ATC>ATT c.525C>T 8 175 175 NA NA NA NA NA NA 10 52595937 52595937 G A SNP A1CF NM_138932 human genbank 57_37b -1 reviewed silent c.501 p.I167 0.615 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like - no_errors -A2M 2 genome.wustl.edu 37 12 9230409 9230409 + Missense_Mutation SNP T T C novel unknown TCGA-BH-A18H-01 TCGA-BH-A18H-10 T T NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.Y1055C P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 Missense_Mutation p.Y1055C A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(3163-3165)TAC>TGC c.3164A>G 26 1055 1055 high 3.73 Y1055C getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1010&re=1266&var=Y1055C getma.org/pdb.php?prot=A2MG_HUMAN&from=1010&to=1266&var=Y1055C getma.org/?cm=var&var=hg19,12,9230409,T,C&fts=all 12 9230409 9230409 T C SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.3164 p.Y1055C 0.143 superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9242995 9242995 + Silent SNP G G A novel unknown TCGA-C8-A138-01 TCGA-C8-A138-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.N851N P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 Silent p.N851N A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2551-2553)AAC>AAT c.2553C>T 20 851 851 NA NA NA NA NA NA 12 9242995 9242995 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2553 p.N851 0.003 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9246090 9246090 + Silent SNP C C T novel unknown TCGA-A2-A0EY-01 TCGA-A2-A0EY-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.E737E P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 Silent p.E737E A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(2209-2211)GAG>GAA c.2211G>A 18 737 737 NA NA NA NA NA NA 12 9246090 9246090 C T SNP A2M NM_000014 human genbank 57_37b -1 reviewed silent c.2211 p.E737 1.000 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9251298 9251298 + Nonsense_Mutation SNP G G A novel unknown TCGA-A8-A08G-01 TCGA-A8-A08G-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Nonsense_Mutation p.R586* P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 Nonsense_Mutation p.R586* A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1756-1758)CGA>TGA c.1756C>T 15 586 586 NA 0.0 R586* NA NA getma.org/?cm=var&var=hg19,12,9251298,G,A&fts=all 12 9251298 9251298 G A SNP A2M NM_000014 human genbank 57_37b -1 reviewed nonsense c.1756 p.R586* 0.003 HMMPfam_A2M_N_2 PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2M 2 genome.wustl.edu 37 12 9256962 9256962 + Missense_Mutation SNP G G T novel unknown TCGA-B6-A0IQ-01 TCGA-B6-A0IQ-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.P380Q P01023 NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1138-1140)CCA>CAA c.1139C>A 11 380 380 Missense_Mutation p.P380Q A2M NM_000014 NP_000005 A2MG_HUMAN P01023 c.(1138-1140)CCA>CAA c.1139C>A 11 380 380 medium 2.625 P380Q getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=222&re=421&var=P380Q getma.org/pdb.php?prot=A2MG_HUMAN&from=222&to=421&var=P380Q getma.org/?cm=var&var=hg19,12,9256962,G,T&fts=all 12 9256962 9256962 G T SNP A2M NM_000014 human genbank 57_37b -1 reviewed missense c.1139 p.P380Q 0.957 NULL PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2ML1 144568 genome.wustl.edu 37 12 8975820 8975820 + Silent SNP C C A novel unknown TCGA-C8-A12Y-01 TCGA-C8-A12Y-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.S35S A8K2U0 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(103-105)TCC>TCA c.105C>A 2 35 35 Silent p.S35S A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(103-105)TCC>TCA c.105C>A 2 35 35 NA NA NA NA NA NA 12 8975820 8975820 C A SNP A2ML1 NM_144670 human genbank 57_37b +1 validated silent c.105 p.S35 0.801 HMMPfam_A2M_N HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2ML1 144568 genome.wustl.edu 37 12 8994108 8994108 + Missense_Mutation SNP G G C novel unknown TCGA-A1-A0SO-01 TCGA-A1-A0SO-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.W408C A8K2U0 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1222-1224)TGG>TGC c.1224G>C 11 408 408 Missense_Mutation p.W408C A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1222-1224)TGG>TGC c.1224G>C 11 408 408 medium 2.005 W408C getma.org/?cm=msa&ty=f&p=A2ML1_HUMAN&rb=239&re=438&var=W408C getma.org/pdb.php?prot=A2ML1_HUMAN&from=239&to=438&var=W408C getma.org/?cm=var&var=hg19,12,8994108,G,C&fts=all 12 8994108 8994108 G C SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1224 p.W408C 0.995 NULL HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2ML1 144568 genome.wustl.edu 37 12 8995779 8995779 + Missense_Mutation SNP G G A novel unknown TCGA-A8-A08P-01 TCGA-A8-A08P-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.R433H A8K2U0 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1297-1299)CGT>CAT c.1298G>A 12 433 433 Missense_Mutation p.R433H A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1297-1299)CGT>CAT c.1298G>A 12 433 433 neutral 0.255 R433H getma.org/?cm=msa&ty=f&p=A2ML1_HUMAN&rb=239&re=438&var=R433H getma.org/pdb.php?prot=A2ML1_HUMAN&from=239&to=438&var=R433H getma.org/?cm=var&var=hg19,12,8995779,G,A&fts=all 12 8995779 8995779 G A SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1298 p.R433H 0.108 NULL HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2ML1 144568 genome.wustl.edu 37 12 8995942 8995942 + Silent SNP C C T novel unknown TCGA-C8-A12T-01 TCGA-C8-A12T-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.I487I A8K2U0 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1459-1461)ATC>ATT c.1461C>T 12 487 487 Silent p.I487I A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1459-1461)ATC>ATT c.1461C>T 12 487 487 NA NA NA NA NA NA 12 8995942 8995942 C T SNP A2ML1 NM_144670 human genbank 57_37b +1 validated silent c.1461 p.I487 0.040 HMMPfam_A2M_N_2 HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2ML1 144568 genome.wustl.edu 37 12 8998791 8998791 + Silent SNP C C T novel unknown TCGA-BH-A0AV-01 TCGA-BH-A0AV-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.F552F A8K2U0 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1654-1656)TTC>TTT c.1656C>T 14 552 552 Silent p.F552F A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1654-1656)TTC>TTT c.1656C>T 14 552 552 NA NA NA NA NA NA 12 8998791 8998791 C T SNP A2ML1 NM_144670 human genbank 57_37b +1 validated silent c.1656 p.F552 0.669 HMMPfam_A2M_N_2 HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2ML1 144568 genome.wustl.edu 37 12 9000231 9000231 + Silent SNP G G A novel unknown TCGA-AN-A0FT-01 TCGA-AN-A0FT-10 G G NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Silent p.A590A A8K2U0 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1768-1770)GCG>GCA c.1770G>A 15 590 590 Silent p.A590A A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1768-1770)GCG>GCA c.1770G>A 15 590 590 NA NA NA NA NA NA 12 9000231 9000231 G A SNP A2ML1 NM_144670 human genbank 57_37b +1 validated silent c.1770 p.A590 0.000 HMMPfam_A2M_N_2 HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors -A2ML1 144568 genome.wustl.edu 37 12 9001389 9001389 + Missense_mUtAtioN SNP C C G novel unknown TCGA-BH-A0HP-01 TCGA-BH-A0HP-10 C C NA NA NA NA Unknown Untested Somatic Phase_IV Capture NA 1 dbGAP Illumina GAIIx NA NA NA Missense_Mutation p.S636C A8K2U0 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1906-1908)TCT>TGT c.1907C>G 16 636 636 Missense_Mutation p.S636C A2ML1 NM_144670 NP_653271 A2ML1_HUMAN A8K2U0 c.(1906-1908)TCT>TGT c.1907C>G 16 636 636 neutral -0.22 S636C getma.org/?cm=msa&ty=f&p=A2ML1_HUMAN&rb=602&re=735&var=S636C getma.org/pdb.php?prot=A2ML1_HUMAN&from=602&to=735&var=S636C getma.org/?cm=var&var=hg19,12,9001389,C,G&fts=all 12 9001389 9001389 C G SNP A2ML1 NM_144670 human genbank 57_37b +1 validated missense c.1907 p.S636C 0.165 NULL HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep - no_errors diff --git a/core/src/test/scripts/test_data/study_various_issues/case_lists/cases_custom.txt b/core/src/test/scripts/test_data/study_various_issues/case_lists/cases_custom.txt deleted file mode 100644 index 839e0cba2d8..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/case_lists/cases_custom.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_custom -case_list_name: this is an optional custom case list -case_list_description: this is an optional custom case list -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SF-01 TCGA-A1-A0SG-01 TCGA-A1-A0SH-01 TCGA-A1-A0SI-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SN-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A1-A0SQ-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 TCGA-A2-A04X-01 TCGA-A2-A04Y-01 TCGA-A2-A0CL-01 TCGA-A2-A0CM-01 TCGA-A2-A0CP-01 TCGA-A2-A0CQ-01 TCGA-A2-A0CS-01 TCGA-A2-A0CT-01 TCGA-A2-A0CU-01 TCGA-A2-A0CV-01 TCGA-A2-A0CW-01 TCGA-A2-A0CX-01 TCGA-A2-A0D0-01 TCGA-A2-A0D1-01 TCGA-A2-A0D2-01 TCGA-A2-A0D3-01 TCGA-A2-A0D4-01 TCGA-A2-A0EM-01 TCGA-A2-A0EN-01 TCGA-A2-A0EO-01 TCGA-A2-A0EQ-01 TCGA-A2-A0ER-01 TCGA-A2-A0ES-01 TCGA-A2-A0ET-01 TCGA-A2-A0EU-01 TCGA-A2-A0EV-01 TCGA-A2-A0EW-01 TCGA-A2-A0EX-01 TCGA-A2-A0EY-01 TCGA-A2-A0ST-01 TCGA-A2-A0SU-01 TCGA-A2-A0SV-01 TCGA-A2-A0SW-01 TCGA-A2-A0SX-01 TCGA-A2-A0SY-01 TCGA-A2-A0T0-01 TCGA-A2-A0T1-01 TCGA-A2-A0T2-01 TCGA-A2-A0T3-01 TCGA-A2-A0T4-01 TCGA-A2-A0T5-01 TCGA-A2-A0T6-01 TCGA-A2-A0T7-01 TCGA-A2-A0YC-01 TCGA-A2-A0YD-01 TCGA-A2-A0YE-01 TCGA-A2-A0YF-01 TCGA-A2-A0YG-01 TCGA-A2-A0YH-01 TCGA-A2-A0YI-01 TCGA-A2-A0YJ-01 TCGA-A2-A0YK-01 TCGA-A2-A0YL-01 TCGA-A2-A0YM-01 TCGA-A2-A0YT-01 TCGA-A2-A1FV-01 TCGA-A2-A1FW-01 TCGA-A2-A1FX-01 TCGA-A2-A1FZ-01 TCGA-A2-A1G0-01 TCGA-A2-A1G1-01 TCGA-A2-A1G4-01 TCGA-A2-A1G6-01 TCGA-A2-A259-01 TCGA-A2-A25A-01 TCGA-A2-A25B-01 TCGA-A2-A25C-01 TCGA-A2-A25D-01 TCGA-A2-A25E-01 TCGA-A2-A25F-01 TCGA-A7-A0CD-01 TCGA-A7-A0CE-01 TCGA-A7-A0CG-01 TCGA-A7-A0CH-01 TCGA-A7-A0CJ-01 TCGA-A7-A0D9-01 TCGA-A7-A0DA-01 TCGA-A7-A0DB-01 TCGA-A7-A13D-01 TCGA-A7-A13E-01 TCGA-A7-A13F-01 TCGA-A7-A13G-01 TCGA-A7-A26E-01 TCGA-A7-A26F-01 TCGA-A7-A26G-01 TCGA-A7-A26H-01 TCGA-A7-A26I-01 TCGA-A7-A26J-01 TCGA-A8-A06N-01 TCGA-A8-A06O-01 TCGA-A8-A06P-01 TCGA-A8-A06Q-01 TCGA-A8-A06R-01 TCGA-A8-A06T-01 TCGA-A8-A06U-01 TCGA-A8-A06X-01 TCGA-A8-A06Y-01 TCGA-A8-A06Z-01 TCGA-A8-A075-01 TCGA-A8-A076-01 TCGA-A8-A079-01 TCGA-A8-A07B-01 TCGA-A8-A07E-01 TCGA-A8-A07F-01 TCGA-A8-A07G-01 TCGA-A8-A07I-01 TCGA-A8-A07J-01 TCGA-A8-A07L-01 TCGA-A8-A07O-01 TCGA-A8-A07P-01 TCGA-A8-A07R-01 TCGA-A8-A07S-01 TCGA-A8-A07U-01 TCGA-A8-A07W-01 TCGA-A8-A07Z-01 TCGA-A8-A081-01 TCGA-A8-A082-01 TCGA-A8-A083-01 TCGA-A8-A084-01 TCGA-A8-A085-01 TCGA-A8-A086-01 TCGA-A8-A08A-01 TCGA-A8-A08B-01 TCGA-A8-A08C-01 TCGA-A8-A08F-01 TCGA-A8-A08G-01 TCGA-A8-A08H-01 TCGA-A8-A08I-01 TCGA-A8-A08J-01 TCGA-A8-A08L-01 TCGA-A8-A08O-01 TCGA-A8-A08P-01 TCGA-A8-A08R-01 TCGA-A8-A08S-01 TCGA-A8-A08T-01 TCGA-A8-A08X-01 TCGA-A8-A08Z-01 TCGA-A8-A090-01 TCGA-A8-A091-01 TCGA-A8-A092-01 TCGA-A8-A093-01 TCGA-A8-A094-01 TCGA-A8-A095-01 TCGA-A8-A096-01 TCGA-A8-A097-01 TCGA-A8-A099-01 TCGA-A8-A09A-01 TCGA-A8-A09B-01 TCGA-A8-A09C-01 TCGA-A8-A09D-01 TCGA-A8-A09E-01 TCGA-A8-A09G-01 TCGA-A8-A09I-01 TCGA-A8-A09M-01 TCGA-A8-A09N-01 TCGA-A8-A09Q-01 TCGA-A8-A09R-01 TCGA-A8-A09T-01 TCGA-A8-A09V-01 TCGA-A8-A09W-01 TCGA-A8-A09X-01 TCGA-A8-A09Z-01 TCGA-A8-A0A1-01 TCGA-A8-A0A2-01 TCGA-A8-A0A4-01 TCGA-A8-A0A6-01 TCGA-A8-A0A7-01 TCGA-A8-A0A9-01 TCGA-A8-A0AB-01 TCGA-A8-A0AD-01 TCGA-AC-A23C-01 TCGA-AC-A23E-01 TCGA-AC-A23H-01 TCGA-AC-A2B8-01 TCGA-AC-A2FB-01 TCGA-AC-A2FF-01 TCGA-AC-A2FG-01 TCGA-AN-A03X-01 TCGA-AN-A03Y-01 TCGA-AN-A041-01 TCGA-AN-A046-01 TCGA-AN-A049-01 TCGA-AN-A04A-01 TCGA-AN-A04C-01 TCGA-AN-A04D-01 TCGA-AN-A0AJ-01 TCGA-AN-A0AK-01 TCGA-AN-A0AL-01 TCGA-AN-A0AM-01 TCGA-AN-A0AR-01 TCGA-AN-A0AS-01 TCGA-AN-A0AT-01 TCGA-AN-A0FD-01 TCGA-AN-A0FF-01 TCGA-AN-A0FJ-01 TCGA-AN-A0FK-01 TCGA-AN-A0FL-01 TCGA-AN-A0FN-01 TCGA-AN-A0FS-01 TCGA-AN-A0FT-01 TCGA-AN-A0FV-01 TCGA-AN-A0FW-01 TCGA-AN-A0FX-01 TCGA-AN-A0FY-01 TCGA-AN-A0FZ-01 TCGA-AN-A0XL-01 TCGA-AN-A0XN-01 TCGA-AN-A0XO-01 TCGA-AN-A0XR-01 TCGA-AN-A0XS-01 TCGA-AN-A0XT-01 TCGA-AN-A0XU-01 TCGA-AN-A0XV-01 TCGA-AN-A0XW-01 TCGA-AO-A03L-01 TCGA-AO-A03M-01 TCGA-AO-A03N-01 TCGA-AO-A03O-01 TCGA-AO-A03P-01 TCGA-AO-A03R-01 TCGA-AO-A03T-01 TCGA-AO-A03U-01 TCGA-AO-A03V-01 TCGA-AO-A0J2-01 TCGA-AO-A0J3-01 TCGA-AO-A0J4-01 TCGA-AO-A0J5-01 TCGA-AO-A0J6-01 TCGA-AO-A0J7-01 TCGA-AO-A0J8-01 TCGA-AO-A0J9-01 TCGA-AO-A0JA-01 TCGA-AO-A0JB-01 TCGA-AO-A0JC-01 TCGA-AO-A0JD-01 TCGA-AO-A0JE-01 TCGA-AO-A0JF-01 TCGA-AO-A0JG-01 TCGA-AO-A0JI-01 TCGA-AO-A0JJ-01 TCGA-AO-A0JL-01 TCGA-AO-A0JM-01 TCGA-AO-A124-01 TCGA-AO-A125-01 TCGA-AO-A126-01 TCGA-AO-A128-01 TCGA-AO-A129-01 TCGA-AO-A12A-01 TCGA-AO-A12B-01 TCGA-AO-A12D-01 TCGA-AO-A12E-01 TCGA-AO-A12F-01 TCGA-AO-A12G-01 TCGA-AO-A12H-01 TCGA-AO-A1KO-01 TCGA-AO-A1KP-01 TCGA-AO-A1KQ-01 TCGA-AO-A1KR-01 TCGA-AO-A1KS-01 TCGA-AO-A1KT-01 TCGA-AQ-A04H-01 TCGA-AQ-A04J-01 TCGA-AQ-A04L-01 TCGA-AQ-A0Y5-01 TCGA-AQ-A1H2-01 TCGA-AQ-A1H3-01 TCGA-AR-A0TP-01 TCGA-AR-A0TQ-01 TCGA-AR-A0TR-01 TCGA-AR-A0TS-01 TCGA-AR-A0TT-01 TCGA-AR-A0TV-01 TCGA-AR-A0TW-01 TCGA-AR-A0TX-01 TCGA-AR-A0TY-01 TCGA-AR-A0TZ-01 TCGA-AR-A0U0-01 TCGA-AR-A0U1-01 TCGA-AR-A0U2-01 TCGA-AR-A0U3-01 TCGA-AR-A0U4-01 TCGA-AR-A1AH-01 TCGA-AR-A1AI-01 TCGA-AR-A1AJ-01 TCGA-AR-A1AK-01 TCGA-AR-A1AL-01 TCGA-AR-A1AN-01 TCGA-AR-A1AO-01 TCGA-AR-A1AP-01 TCGA-AR-A1AQ-01 TCGA-AR-A1AR-01 TCGA-AR-A1AS-01 TCGA-AR-A1AU-01 TCGA-AR-A1AV-01 TCGA-AR-A1AW-01 TCGA-AR-A1AX-01 TCGA-AR-A1AY-01 TCGA-AR-A24H-01 TCGA-AR-A24K-01 TCGA-AR-A24L-01 TCGA-AR-A24M-01 TCGA-AR-A24N-01 TCGA-AR-A24O-01 TCGA-AR-A24P-01 TCGA-AR-A24Q-01 TCGA-AR-A24R-01 TCGA-AR-A24S-01 TCGA-AR-A24T-01 TCGA-AR-A24U-01 TCGA-AR-A24V-01 TCGA-AR-A24W-01 TCGA-AR-A24X-01 TCGA-AR-A24Z-01 TCGA-AR-A250-01 TCGA-AR-A251-01 TCGA-AR-A252-01 TCGA-AR-A254-01 TCGA-AR-A255-01 TCGA-AR-A256-01 TCGA-B6-A0I2-01 TCGA-B6-A0I5-01 TCGA-B6-A0I9-01 TCGA-B6-A0IA-01 TCGA-B6-A0IB-01 TCGA-B6-A0IC-01 TCGA-B6-A0IE-01 TCGA-B6-A0IH-01 TCGA-B6-A0IJ-01 TCGA-B6-A0IK-01 TCGA-B6-A0IM-01 TCGA-B6-A0IN-01 TCGA-B6-A0IO-01 TCGA-B6-A0IP-01 TCGA-B6-A0IQ-01 TCGA-B6-A0RE-01 TCGA-B6-A0RG-01 TCGA-B6-A0RH-01 TCGA-B6-A0RI-01 TCGA-B6-A0RL-01 TCGA-B6-A0RM-01 TCGA-B6-A0RN-01 TCGA-B6-A0RO-01 TCGA-B6-A0RP-01 TCGA-B6-A0RQ-01 TCGA-B6-A0RS-01 TCGA-B6-A0RT-01 TCGA-B6-A0RU-01 TCGA-B6-A0RV-01 TCGA-B6-A0WS-01 TCGA-B6-A0WT-01 TCGA-B6-A0WV-01 TCGA-B6-A0WW-01 TCGA-B6-A0WX-01 TCGA-B6-A0WY-01 TCGA-B6-A0WZ-01 TCGA-B6-A0X0-01 TCGA-B6-A0X1-01 TCGA-B6-A0X4-01 TCGA-B6-A0X5-01 TCGA-B6-A0X7-01 TCGA-B6-A1KC-01 TCGA-B6-A1KF-01 TCGA-B6-A1KI-01 TCGA-B6-A1KN-01 TCGA-BH-A0AU-01 TCGA-BH-A0AV-01 TCGA-BH-A0AW-01 TCGA-BH-A0AY-01 TCGA-BH-A0AZ-01 TCGA-BH-A0B0-01 TCGA-BH-A0B3-01 TCGA-BH-A0B4-01 TCGA-BH-A0B5-01 TCGA-BH-A0B7-01 TCGA-BH-A0B9-01 TCGA-BH-A0BA-01 TCGA-BH-A0BC-01 TCGA-BH-A0BD-01 TCGA-BH-A0BF-01 TCGA-BH-A0BG-01 TCGA-BH-A0BJ-01 TCGA-BH-A0BL-01 TCGA-BH-A0BM-01 TCGA-BH-A0BO-01 TCGA-BH-A0BP-01 TCGA-BH-A0BQ-01 TCGA-BH-A0BR-01 TCGA-BH-A0BS-01 TCGA-BH-A0BT-01 TCGA-BH-A0BV-01 TCGA-BH-A0BW-01 TCGA-BH-A0BZ-01 TCGA-BH-A0C0-01 TCGA-BH-A0C1-01 TCGA-BH-A0C3-01 TCGA-BH-A0C7-01 TCGA-BH-A0DD-01 TCGA-BH-A0DE-01 TCGA-BH-A0DG-01 TCGA-BH-A0DH-01 TCGA-BH-A0DI-01 TCGA-BH-A0DK-01 TCGA-BH-A0DL-01 TCGA-BH-A0DO-01 TCGA-BH-A0DP-01 TCGA-BH-A0DQ-01 TCGA-BH-A0DS-01 TCGA-BH-A0DT-01 TCGA-BH-A0DV-01 TCGA-BH-A0DX-01 TCGA-BH-A0DZ-01 TCGA-BH-A0E0-01 TCGA-BH-A0E1-01 TCGA-BH-A0E2-01 TCGA-BH-A0E6-01 TCGA-BH-A0E7-01 TCGA-BH-A0E9-01 TCGA-BH-A0EA-01 TCGA-BH-A0EB-01 TCGA-BH-A0EE-01 TCGA-BH-A0EI-01 TCGA-BH-A0GY-01 TCGA-BH-A0GZ-01 TCGA-BH-A0H0-01 TCGA-BH-A0H3-01 TCGA-BH-A0H5-01 TCGA-BH-A0H6-01 TCGA-BH-A0H7-01 TCGA-BH-A0H9-01 TCGA-BH-A0HA-01 TCGA-BH-A0HB-01 TCGA-BH-A0HI-01 TCGA-BH-A0HK-01 TCGA-BH-A0HO-01 TCGA-BH-A0HP-01 TCGA-BH-A0HU-01 TCGA-BH-A0HW-01 TCGA-BH-A0HX-01 TCGA-BH-A0RX-01 TCGA-BH-A0W3-01 TCGA-BH-A0W4-01 TCGA-BH-A0W5-01 TCGA-BH-A0W7-01 TCGA-BH-A0WA-01 TCGA-BH-A18F-01 TCGA-BH-A18G-01 TCGA-BH-A18H-01 TCGA-BH-A18I-01 TCGA-BH-A18J-01 TCGA-BH-A18K-01 TCGA-BH-A18L-01 TCGA-BH-A18M-01 TCGA-BH-A18N-01 TCGA-BH-A18P-01 TCGA-BH-A18Q-01 TCGA-BH-A18R-01 TCGA-BH-A18S-01 TCGA-BH-A18T-01 TCGA-BH-A18U-01 TCGA-BH-A18V-01 TCGA-BH-A1EN-01 TCGA-BH-A1EO-01 TCGA-BH-A1ES-01 TCGA-BH-A1ET-01 TCGA-BH-A1EU-01 TCGA-BH-A1EV-01 TCGA-BH-A1EW-01 TCGA-BH-A1EX-01 TCGA-BH-A1EY-01 TCGA-BH-A1F0-01 TCGA-BH-A1F2-01 TCGA-BH-A1F5-01 TCGA-BH-A1F6-01 TCGA-BH-A1F8-01 TCGA-BH-A1FB-01 TCGA-BH-A1FC-01 TCGA-BH-A1FD-01 TCGA-BH-A1FE-01 TCGA-BH-A1FG-01 TCGA-BH-A1FH-01 TCGA-BH-A1FJ-01 TCGA-BH-A1FL-01 TCGA-BH-A1FM-01 TCGA-BH-A1FN-01 TCGA-BH-A1FR-01 TCGA-BH-A1FU-01 TCGA-BH-A201-01 TCGA-BH-A202-01 TCGA-BH-A203-01 TCGA-BH-A204-01 TCGA-BH-A208-01 TCGA-BH-A209-01 TCGA-BH-A28Q-01 TCGA-C8-A12K-01 TCGA-C8-A12L-01 TCGA-C8-A12M-01 TCGA-C8-A12N-01 TCGA-C8-A12P-01 TCGA-C8-A12Q-01 TCGA-C8-A12T-01 TCGA-C8-A12U-01 TCGA-C8-A12V-01 TCGA-C8-A12W-01 TCGA-C8-A12X-01 TCGA-C8-A12Y-01 TCGA-C8-A12Z-01 TCGA-C8-A130-01 TCGA-C8-A131-01 TCGA-C8-A132-01 TCGA-C8-A133-01 TCGA-C8-A134-01 TCGA-C8-A135-01 TCGA-C8-A137-01 TCGA-C8-A138-01 TCGA-C8-A1HE-01 TCGA-C8-A1HF-01 TCGA-C8-A1HG-01 TCGA-C8-A1HI-01 TCGA-C8-A1HJ-01 TCGA-C8-A1HK-01 TCGA-C8-A1HL-01 TCGA-C8-A1HM-01 TCGA-C8-A1HN-01 TCGA-C8-A1HO-01 TCGA-C8-A26V-01 TCGA-C8-A26W-01 TCGA-C8-A26X-01 TCGA-C8-A26Y-01 TCGA-C8-A26Z-01 TCGA-C8-A273-01 TCGA-C8-A274-01 TCGA-C8-A275-01 TCGA-C8-A278-01 TCGA-C8-A27A-01 TCGA-C8-A27B-01 TCGA-D8-A13Y-01 TCGA-D8-A13Z-01 TCGA-D8-A141-01 TCGA-D8-A142-01 TCGA-D8-A143-01 TCGA-D8-A145-01 TCGA-D8-A146-01 TCGA-D8-A147-01 TCGA-D8-A1J8-01 TCGA-D8-A1J9-01 TCGA-D8-A1JA-01 TCGA-D8-A1JB-01 TCGA-D8-A1JC-01 TCGA-D8-A1JD-01 TCGA-D8-A1JE-01 TCGA-D8-A1JF-01 TCGA-D8-A1JG-01 TCGA-D8-A1JH-01 TCGA-D8-A1JI-01 TCGA-D8-A1JJ-01 TCGA-D8-A1JK-01 TCGA-D8-A1JL-01 TCGA-D8-A1JM-01 TCGA-D8-A1JN-01 TCGA-D8-A1JP-01 TCGA-D8-A1JS-01 TCGA-D8-A1JT-01 TCGA-D8-A1JU-01 TCGA-D8-A1X5-01 TCGA-D8-A1X6-01 TCGA-D8-A1X7-01 TCGA-D8-A1X8-01 TCGA-D8-A1X9-01 TCGA-D8-A1XA-01 TCGA-D8-A1XB-01 TCGA-D8-A1XC-01 TCGA-D8-A1XD-01 TCGA-D8-A1XF-01 TCGA-D8-A1XG-01 TCGA-D8-A1XJ-01 TCGA-D8-A1XK-01 TCGA-D8-A1XL-01 TCGA-D8-A1XM-01 TCGA-D8-A1XO-01 TCGA-D8-A1XQ-01 TCGA-D8-A1XR-01 TCGA-D8-A1XS-01 TCGA-D8-A1XT-01 TCGA-D8-A1XU-01 TCGA-D8-A1XV-01 TCGA-D8-A1XW-01 TCGA-D8-A1XY-01 TCGA-D8-A1XZ-01 TCGA-D8-A1Y0-01 TCGA-D8-A1Y1-01 TCGA-D8-A1Y2-01 TCGA-D8-A1Y3-01 TCGA-D8-A27E-01 TCGA-D8-A27F-01 TCGA-D8-A27G-01 TCGA-D8-A27H-01 TCGA-D8-A27I-01 TCGA-D8-A27K-01 TCGA-D8-A27L-01 TCGA-D8-A27M-01 TCGA-D8-A27N-01 TCGA-D8-A27P-01 TCGA-D8-A27R-01 TCGA-D8-A27T-01 TCGA-D8-A27V-01 TCGA-D8-A27W-01 TCGA-E2-A105-01 TCGA-E2-A107-01 TCGA-E2-A108-01 TCGA-E2-A109-01 TCGA-E2-A10A-01 TCGA-E2-A10B-01 TCGA-E2-A10C-01 TCGA-E2-A10E-01 TCGA-E2-A10F-01 TCGA-E2-A14N-01 TCGA-E2-A14O-01 TCGA-E2-A14P-01 TCGA-E2-A14Q-01 TCGA-E2-A14R-01 TCGA-E2-A14S-01 TCGA-E2-A14V-01 TCGA-E2-A14W-01 TCGA-E2-A14X-01 TCGA-E2-A14Y-01 TCGA-E2-A14Z-01 TCGA-E2-A150-01 TCGA-E2-A152-01 TCGA-E2-A153-01 TCGA-E2-A154-01 TCGA-E2-A155-01 TCGA-E2-A156-01 TCGA-E2-A158-01 TCGA-E2-A159-01 TCGA-E2-A15C-01 TCGA-E2-A15G-01 TCGA-E2-A15H-01 TCGA-E2-A15I-01 TCGA-E2-A15J-01 TCGA-E2-A15L-01 TCGA-E2-A15M-01 TCGA-E2-A15O-01 TCGA-E2-A15P-01 TCGA-E2-A15R-01 TCGA-E2-A1AZ-01 TCGA-E2-A1B0-01 TCGA-E2-A1B1-01 TCGA-E2-A1B4-01 TCGA-E2-A1B5-01 TCGA-E2-A1B6-01 TCGA-E2-A1BC-01 TCGA-E2-A1BD-01 TCGA-E2-A1IE-01 TCGA-E2-A1IF-01 TCGA-E2-A1IG-01 TCGA-E2-A1IH-01 TCGA-E2-A1II-01 TCGA-E2-A1IJ-01 TCGA-E2-A1IK-01 TCGA-E2-A1IL-01 TCGA-E2-A1IN-01 TCGA-E2-A1IO-01 TCGA-E2-A1IU-01 TCGA-E2-A1L6-01 TCGA-E2-A1L7-01 TCGA-E2-A1L8-01 TCGA-E2-A1L9-01 TCGA-E2-A1LA-01 TCGA-E2-A1LB-01 TCGA-E2-A1LG-01 TCGA-E2-A1LH-01 TCGA-E2-A1LI-01 TCGA-E2-A1LK-01 TCGA-E2-A1LL-01 TCGA-E9-A1N3-01 TCGA-E9-A1N4-01 TCGA-E9-A1N5-01 TCGA-E9-A1N6-01 TCGA-E9-A1N8-01 TCGA-E9-A1N9-01 TCGA-E9-A1NA-01 TCGA-E9-A1NC-01 TCGA-E9-A1ND-01 TCGA-E9-A1NE-01 TCGA-E9-A1NF-01 TCGA-E9-A1NG-01 TCGA-E9-A1NH-01 TCGA-E9-A1NI-01 TCGA-E9-A1QZ-01 TCGA-E9-A1R0-01 TCGA-E9-A1R2-01 TCGA-E9-A1R3-01 TCGA-E9-A1R4-01 TCGA-E9-A1R5-01 TCGA-E9-A1R6-01 TCGA-E9-A1R7-01 TCGA-E9-A1RA-01 TCGA-E9-A1RB-01 TCGA-E9-A1RC-01 TCGA-E9-A1RD-01 TCGA-E9-A1RE-01 TCGA-E9-A1RF-01 TCGA-E9-A1RG-01 TCGA-E9-A1RH-01 TCGA-E9-A1RI-01 TCGA-E9-A226-01 TCGA-E9-A227-01 TCGA-E9-A228-01 TCGA-E9-A229-01 TCGA-E9-A22A-01 TCGA-E9-A22B-01 TCGA-E9-A22D-01 TCGA-E9-A22E-01 TCGA-E9-A22G-01 TCGA-E9-A22H-01 TCGA-E9-A243-01 TCGA-E9-A244-01 TCGA-E9-A245-01 TCGA-E9-A247-01 TCGA-E9-A248-01 TCGA-E9-A249-01 TCGA-E9-A24A-01 TCGA-E9-A295-01 TCGA-EW-A1IW-01 TCGA-EW-A1IX-01 TCGA-EW-A1IY-01 TCGA-EW-A1IZ-01 TCGA-EW-A1J1-01 TCGA-EW-A1J2-01 TCGA-EW-A1J3-01 TCGA-EW-A1J5-01 TCGA-EW-A1J6-01 TCGA-EW-A1OV-01 TCGA-EW-A1OW-01 TCGA-EW-A1OX-01 TCGA-EW-A1OY-01 TCGA-EW-A1OZ-01 TCGA-EW-A1P0-01 TCGA-EW-A1P1-01 TCGA-EW-A1P3-01 TCGA-EW-A1P4-01 TCGA-EW-A1P5-01 TCGA-EW-A1P6-01 TCGA-EW-A1P7-01 TCGA-EW-A1P8-01 TCGA-EW-A1PA-01 TCGA-EW-A1PB-01 TCGA-EW-A1PD-01 TCGA-EW-A1PE-01 TCGA-EW-A1PF-01 TCGA-EW-A1PG-01 TCGA-EW-A1PH-01 TCGA-EW-A2FS-01 TCGA-EW-A2FV-01 TCGA-EW-A2FW-01 TCGA-GI-A2C8-01 diff --git a/core/src/test/scripts/test_data/study_various_issues/case_lists/cases_sequenced.txt b/core/src/test/scripts/test_data/study_various_issues/case_lists/cases_sequenced.txt deleted file mode 100644 index b7cfa08483e..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/case_lists/cases_sequenced.txt +++ /dev/null @@ -1,5 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -stable_id: brca_tcga_pub_sequenced -case_list_name: Samples profiled for mutations -case_list_description: This is this case list that contains all samples that are profiled for mutations. -case_list_ids: TCGA-A1-A0SB-01 TCGA-A1-A0SK-01 TCGA-A2-A04P-01 TCGA-A2-A0CM-01 TCGA-B6-A0WX-01 TCGA-BH-A0E0-01 TCGA-BH-A0HL-01 TCGA-BH-A18K-01 TCGA-BH-A18V-01 TCGA-BH-A1F0-01 TCGA-GI-A2C8-01 TCGA-A8-A08P-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-A8-A08G-01 TCGA-B6-A0IQ-01 TCGA-BH-A18H-01 TCGA-A1-A0SO-01 diff --git a/core/src/test/scripts/test_data/study_various_issues/data_patients.txt b/core/src/test/scripts/test_data/study_various_issues/data_patients.txt deleted file mode 100644 index 7c4fd4b7bb7..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/data_patients.txt +++ /dev/null @@ -1,829 +0,0 @@ -#Patient Identifier Overall Survival Status Overall Survival (Months) Disease Free Status Disease Free (Months) -#Patient identifier Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING NUMBER STRING STRING -#1 1 1 1 1 -PATIENT_ID OS_STATUS OS_MONTHS DFS_STATUS DFS_MONTHS -TCGA-A2-A04P 1:DECEASED 17.97 1:Recurred/Progressed NA -TCGA-A1-A0SK 1:DECEASED 31.77 NA NA -TCGA-A2-A0CM 1:DECEASED 24.77 1:Recurred/Progressed TEST -TCGA-AR-A1AR 1:DECEASED 17.18 NA NA -TCGA-B6-A0WX 1:DECEASED 21.45 1:Recurred/Progressed TEST -TCGA-BH-A1F0 1:DECEASED 25.79 1:Recurred/Progressed NA -TCGA-B6-A0I6 1:DECEASED 32.56 1:Recurred/Progressed NA -TCGA-BH-A18V 1:DECEASED 51.09 NA NA -TCGA-BH-A18Q 1:DECEASED 55.59 NA NA -TCGA-BH-A18K 1:DECEASED 90.74 1:Recurred/Progressed NA -TCGA-BH-A0HL 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-BH-A0E0 0:LIVING 4.37 0:DiseaseFree 4.37 -TCGA-BH-A0RX 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-A7-A13D 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-BH-A0E6 0:LIVING 9.59 0:DiseaseFree 9.59 -TCGA-AO-A0J4 0:LIVING 9.66 0:DiseaseFree 9.66 -TCGA-A7-A0CE 0:LIVING 8.31 0:DiseaseFree 8.31 -TCGA-A7-A13E 0:LIVING 9.43 0:DiseaseFree 9.43 -TCGA-A7-A0DA 0:LIVING 12.25 0:DiseaseFree 12.25 -TCGA-D8-A142 0:LIVING 2 0:DiseaseFree 2 -TCGA-D8-A143 0:LIVING 5.65 0:DiseaseFree 5.65 -TCGA-AQ-A04J 0:LIVING 5.22 0:DiseaseFree 5.22 -TCGA-BH-A0HN 0:LIVING 16.95 0:DiseaseFree 16.95 -TCGA-A2-A0T0 0:LIVING 11.07 0:DiseaseFree 11.07 -TCGA-A2-A0YE 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-A2-A0YJ 0:LIVING 10.71 0:DiseaseFree 10.71 -TCGA-A2-A0D0 0:LIVING 21.12 0:DiseaseFree 21.12 -TCGA-A2-A04U 0:LIVING 22.01 0:DiseaseFree 22.01 -TCGA-AO-A0J6 0:LIVING 25.46 0:DiseaseFree 25.46 -TCGA-A2-A0YM 0:LIVING 21.72 0:DiseaseFree 21.72 -TCGA-A2-A0D2 0:LIVING 25 0:DiseaseFree 25 -TCGA-BH-A0B3 0:LIVING 39.52 0:DiseaseFree 39.52 -TCGA-A2-A04Q 0:LIVING 41.89 0:DiseaseFree 41.89 -TCGA-A2-A0SX 0:LIVING 42.32 1:Recurred/Progressed NA -TCGA-AO-A0JL 0:LIVING 43.33 0:DiseaseFree 43.33 -TCGA-AO-A12F 0:LIVING 48.33 0:DiseaseFree 48.33 -TCGA-BH-A0B9 0:LIVING 51.65 0:DiseaseFree 51.65 -TCGA-A2-A04T 0:LIVING 64.06 0:DiseaseFree 64.06 -TCGA-B6-A0RT 0:LIVING 89.39 0:DiseaseFree 89.39 -TCGA-AO-A128 0:LIVING 94.52 0:DiseaseFree 94.52 -TCGA-AO-A129 0:LIVING 96.03 0:DiseaseFree 96.03 -TCGA-AO-A124 0:LIVING 102.47 0:DiseaseFree 102.47 -TCGA-B6-A0RU 0:LIVING 131.12 0:DiseaseFree 131.12 -TCGA-B6-A0IQ 0:LIVING 127.18 0:DiseaseFree 127.18 -TCGA-B6-A0I2 0:LIVING 125.7 0:DiseaseFree 125.7 -TCGA-B6-A0IJ 0:LIVING 176.85 0:DiseaseFree 176.85 -TCGA-B6-A0X1 0:LIVING 186.31 0:DiseaseFree 186.31 -TCGA-B6-A0RE 0:LIVING 211.38 0:DiseaseFree 211.38 -TCGA-A2-A0ST 0:LIVING 53.98 0:DiseaseFree 53.98 -TCGA-AR-A0TP 0:LIVING 78.59 0:DiseaseFree 78.59 -TCGA-A1-A0SO 0:LIVING 27.99 0:DiseaseFree 27.99 -TCGA-A8-A07C 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A07O 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A07R 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-A8-A07U 0:LIVING 9.95 0:DiseaseFree 9.95 -TCGA-A8-A08H 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08R 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04D 0:LIVING 1.71 0:DiseaseFree 1.71 -TCGA-AN-A0AL 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-AN-A0AR 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0AT 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0FJ 0:LIVING 7.92 0:DiseaseFree 7.92 -TCGA-AN-A0FL 0:LIVING 7.56 0:DiseaseFree 7.56 -TCGA-AN-A0FX 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0G0 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-AN-A0XU 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AR-A0TS 0:LIVING 37.39 0:DiseaseFree 37.39 -TCGA-AR-A0TU 0:LIVING 11.83 0:DiseaseFree 11.83 -TCGA-AR-A0U0 0:LIVING 0.26 0:DiseaseFree 0.26 -TCGA-AR-A0U1 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-AR-A0U4 0:LIVING 53.45 0:DiseaseFree 53.45 -TCGA-AR-A1AH 0:LIVING 75.5 0:DiseaseFree 75.5 -TCGA-AR-A1AI 0:LIVING 61.8 0:DiseaseFree 61.8 -TCGA-AR-A1AJ 0:LIVING 52.7 0:DiseaseFree 52.7 -TCGA-AR-A1AQ 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-AR-A1AY 0:LIVING 20.17 0:DiseaseFree 20.17 -TCGA-BH-A0AV 0:LIVING 38.77 0:DiseaseFree 38.77 -TCGA-BH-A0BG 0:LIVING 24.84 0:DiseaseFree 24.84 -TCGA-BH-A0BL 0:LIVING 43.99 0:DiseaseFree 43.99 -TCGA-BH-A0BW 0:LIVING 11.66 0:DiseaseFree 11.66 -TCGA-BH-A0DL 0:LIVING 48.2 0:DiseaseFree 48.2 -TCGA-BH-A0WA 0:LIVING 12.22 0:DiseaseFree 12.22 -TCGA-BH-A18G 0:LIVING 2 0:DiseaseFree 2 -TCGA-C8-A12K 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12V 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A131 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A134 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A147 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-E2-A14N 0:LIVING 44.35 0:DiseaseFree 44.35 -TCGA-E2-A14R 0:LIVING 27.76 0:DiseaseFree 27.76 -TCGA-E2-A14X 0:LIVING 22.73 0:DiseaseFree 22.73 -TCGA-E2-A14Y 0:LIVING 22.6 0:DiseaseFree 22.6 -TCGA-E2-A150 0:LIVING 19.42 0:DiseaseFree 19.42 -TCGA-E2-A158 0:LIVING 14.78 0:DiseaseFree 14.78 -TCGA-E2-A159 0:LIVING 16.92 0:DiseaseFree 16.92 -TCGA-E2-A1AZ 0:LIVING 64.52 0:DiseaseFree 64.52 -TCGA-E2-A1B5 0:LIVING 25.43 0:DiseaseFree 25.43 -TCGA-A8-A08L 1:DECEASED 9.99 NA NA -TCGA-BH-A1EV 1:DECEASED 11.99 1:Recurred/Progressed NA -TCGA-B6-A0I9 1:DECEASED 12.12 1:Recurred/Progressed NA -TCGA-A8-A09X 1:DECEASED 14 NA NA -TCGA-B6-A0IK 1:DECEASED 18.76 1:Recurred/Progressed NA -TCGA-BH-A18P 1:DECEASED 30.26 1:Recurred/Progressed NA -TCGA-A8-A08J 1:DECEASED 37.03 NA NA -TCGA-BH-A18R 1:DECEASED 37.49 0:DiseaseFree 36.11 -TCGA-AR-A1AT 1:DECEASED 41.79 NA NA -TCGA-B6-A0RS 1:DECEASED 100.6 1:Recurred/Progressed NA -TCGA-BH-A0DZ 0:LIVING 16.26 0:DiseaseFree 16.26 -TCGA-A2-A0T1 0:LIVING 10.58 0:DiseaseFree 10.58 -TCGA-AO-A0J2 0:LIVING 19.22 0:DiseaseFree 19.22 -TCGA-BH-A0AW 0:LIVING 20.43 0:DiseaseFree 20.43 -TCGA-BH-A0EE 0:LIVING 30.98 0:DiseaseFree 30.98 -TCGA-A2-A0D1 0:LIVING 25.82 0:DiseaseFree 25.82 -TCGA-AO-A03N 0:LIVING 54.04 1:Recurred/Progressed NA -TCGA-A2-A0CY 0:LIVING 42.32 0:DiseaseFree 42.32 -TCGA-A2-A04X 0:LIVING 44.32 0:DiseaseFree 44.32 -TCGA-A2-A0CX 0:LIVING 42.81 0:DiseaseFree 42.81 -TCGA-A2-A04W 0:LIVING 63.01 0:DiseaseFree 63.01 -TCGA-AO-A12D 0:LIVING 64 0:DiseaseFree 64 -TCGA-A2-A0CL 0:LIVING 60.02 0:DiseaseFree 60.02 -TCGA-AO-A0JE 0:LIVING 64.56 0:DiseaseFree 64.56 -TCGA-A2-A0EQ 0:LIVING 67.45 0:DiseaseFree 67.45 -TCGA-AO-A03L 0:LIVING 80.23 0:DiseaseFree 80.23 -TCGA-B6-A0RH 0:LIVING 188.84 0:DiseaseFree 188.84 -TCGA-A8-A075 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-A8-A076 0:LIVING 53.91 0:DiseaseFree 53.91 -TCGA-A8-A07B 0:LIVING 32.98 0:DiseaseFree 32.98 -TCGA-A8-A07I 0:LIVING 14 0:DiseaseFree 14 -TCGA-A8-A081 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08B 0:LIVING 23.06 0:DiseaseFree 23.06 -TCGA-A8-A08X 0:LIVING 33.97 0:DiseaseFree 33.97 -TCGA-A8-A092 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-A8-A094 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A09G 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A0A7 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04C 0:LIVING 1.77 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1:Recurred/Progressed NA -TCGA-B6-A0I8 1:DECEASED 24.61 1:Recurred/Progressed NA -TCGA-B6-A0X4 1:DECEASED 28.22 1:Recurred/Progressed NA -TCGA-A8-A06U 1:DECEASED 28.98 NA NA -TCGA-BH-A0EA 1:DECEASED 32.62 0:DiseaseFree 27.3 -TCGA-BH-A18N 1:DECEASED 37.72 NA NA -TCGA-BH-A1EU 1:DECEASED 42.25 0:DiseaseFree NA -TCGA-B6-A0X7 1:DECEASED 58.84 NA NA -TCGA-A2-A04V 1:DECEASED 63.08 1:Recurred/Progressed NA -TCGA-BH-A18S 1:DECEASED 66 0:DiseaseFree 66 -TCGA-BH-A18M 1:DECEASED 72.51 NA NA -TCGA-B6-A0RM 1:DECEASED 77.96 0:DiseaseFree 77.96 -TCGA-BH-A1ET 1:DECEASED 82.79 0:DiseaseFree NA -TCGA-B6-A0IN 1:DECEASED 84.53 1:Recurred/Progressed NA -TCGA-BH-A1EO 1:DECEASED 91.92 0:DiseaseFree NA -TCGA-B6-A0WS 1:DECEASED 97.41 0:DiseaseFree NA -TCGA-B6-A0RP 1:DECEASED 102.7 NA NA -TCGA-B6-A0IH 1:DECEASED 112.29 NA NA -TCGA-B6-A0WY 1:DECEASED 113.67 1:Recurred/Progressed NA -TCGA-BH-A1ES 1:DECEASED 113.74 1:Recurred/Progressed NA -TCGA-B6-A0X0 1:DECEASED 129.61 NA NA -TCGA-B6-A0RQ 1:DECEASED 140.38 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-TCGA-D8-A1XQ 0:LIVING 5.82 0:DiseaseFree 5.82 -TCGA-D8-A1XR 0:LIVING 5.52 0:DiseaseFree 5.52 -TCGA-D8-A1XU 0:LIVING 4.9 0:DiseaseFree 4.9 -TCGA-D8-A1XV 0:LIVING 4.8 0:DiseaseFree 4.8 -TCGA-D8-A1XW 0:LIVING 3.84 0:DiseaseFree 3.84 -TCGA-D8-A1XY 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-D8-A1XZ 0:LIVING 3.94 0:DiseaseFree 3.94 -TCGA-D8-A1Y0 0:LIVING 5.45 0:DiseaseFree 5.45 -TCGA-D8-A1Y1 0:LIVING 3.78 0:DiseaseFree 3.78 -TCGA-D8-A1Y2 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-D8-A1Y3 0:LIVING 4.07 0:DiseaseFree 4.07 -TCGA-D8-A27E 0:LIVING 5.98 0:DiseaseFree 5.98 -TCGA-D8-A27F 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-D8-A27G 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-D8-A27H 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-D8-A27I 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-D8-A27K 0:LIVING 3.88 0:DiseaseFree 3.88 -TCGA-D8-A27L 0:LIVING 4.11 0:DiseaseFree 4.11 -TCGA-D8-A27M 0:LIVING 4.73 0:DiseaseFree 4.73 -TCGA-D8-A27N 0:LIVING 4.76 0:DiseaseFree 4.76 -TCGA-D8-A27P 0:LIVING 0.72 0:DiseaseFree 0.72 -TCGA-D8-A27R 0:LIVING 2.96 0:DiseaseFree 2.96 -TCGA-D8-A27T 0:LIVING 4.44 0:DiseaseFree 4.44 -TCGA-D8-A27V 0:LIVING 2.4 0:DiseaseFree 2.4 -TCGA-D8-A27W 0:LIVING 0.49 0:DiseaseFree 0.49 -TCGA-E2-A1IE 0:LIVING 32.29 0:DiseaseFree 32.29 -TCGA-E2-A1IF 0:LIVING 31.41 0:DiseaseFree 31.41 -TCGA-E2-A1IG 0:LIVING 24.8 0:DiseaseFree 24.8 -TCGA-E2-A1IH 0:LIVING 21.62 0:DiseaseFree 21.62 -TCGA-E2-A1II 0:LIVING 27.93 0:DiseaseFree 27.93 -TCGA-E2-A1IJ 0:LIVING 23.82 0:DiseaseFree 23.82 -TCGA-E2-A1IK 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-E2-A1IL 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E2-A1IN 0:LIVING 12.88 0:DiseaseFree 12.88 -TCGA-E2-A1IO 0:LIVING 14.72 0:DiseaseFree 14.72 -TCGA-E2-A1IP 0:LIVING 14.03 0:DiseaseFree 14.03 -TCGA-E2-A1IU 0:LIVING 4.17 0:DiseaseFree 4.17 -TCGA-E2-A1L6 0:LIVING 43.1 0:DiseaseFree 43.1 -TCGA-E2-A1L7 0:LIVING 20.8 0:DiseaseFree 20.8 -TCGA-E2-A1L8 0:LIVING 33.35 0:DiseaseFree 33.35 -TCGA-E2-A1L9 0:LIVING 12.75 0:DiseaseFree 12.75 -TCGA-E2-A1LA 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-E2-A1LB 0:LIVING 31.93 0:DiseaseFree 31.93 -TCGA-E2-A1LG 0:LIVING 11.5 0:DiseaseFree 11.5 -TCGA-E2-A1LH 0:LIVING 94.45 0:DiseaseFree 94.45 -TCGA-E2-A1LI 0:LIVING 90.35 0:DiseaseFree 90.35 -TCGA-E2-A1LL 0:LIVING 33.31 0:DiseaseFree 33.31 -TCGA-E2-A1LS 0:LIVING 7.85 0:DiseaseFree 7.85 -TCGA-E9-A1N3 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N4 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N5 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N6 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N8 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N9 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NA 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NC 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1ND 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NE 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NF 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NG 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NH 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NI 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1QZ 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R0 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R2 0:LIVING 0.62 0:DiseaseFree 0.62 -TCGA-E9-A1R3 0:LIVING 2.1 0:DiseaseFree 2.1 -TCGA-E9-A1R4 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1R5 0:LIVING 1.38 0:DiseaseFree 1.38 -TCGA-E9-A1R6 0:LIVING 2.76 0:DiseaseFree 2.76 -TCGA-E9-A1R7 0:LIVING 1.12 0:DiseaseFree 1.12 -TCGA-E9-A1RA 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1RB 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A1RC 0:LIVING 40.34 0:DiseaseFree 40.34 -TCGA-E9-A1RD 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A1RE 0:LIVING 1.54 0:DiseaseFree 1.54 -TCGA-E9-A1RF 0:LIVING 1.25 0:DiseaseFree 1.25 -TCGA-E9-A1RG 0:LIVING 1.15 0:DiseaseFree 1.15 -TCGA-E9-A1RH 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E9-A1RI 0:LIVING 1.58 0:DiseaseFree 1.58 -TCGA-E9-A226 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-E9-A227 0:LIVING 0.79 0:DiseaseFree 0.79 -TCGA-E9-A228 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A229 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22A 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22B 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22D 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22E 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22G 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22H 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A243 0:LIVING 1.41 0:DiseaseFree 1.41 -TCGA-E9-A244 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A245 0:LIVING 0.82 0:DiseaseFree 0.82 -TCGA-E9-A247 0:LIVING 0.39 0:DiseaseFree 0.39 -TCGA-E9-A248 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A249 0:LIVING 0.92 0:DiseaseFree 0.92 -TCGA-E9-A24A 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-EW-A1IW 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1IX 0:LIVING 35.55 0:DiseaseFree 35.55 -TCGA-EW-A1IY 0:LIVING 8.48 0:DiseaseFree 8.48 -TCGA-EW-A1IZ 0:LIVING 8.54 0:DiseaseFree 8.54 -TCGA-EW-A1J1 0:LIVING 9.26 0:DiseaseFree 9.26 -TCGA-EW-A1J2 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1J3 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1J5 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-EW-A1J6 0:LIVING 19.55 0:DiseaseFree 19.55 -TCGA-EW-A1OV 0:LIVING 17.15 0:DiseaseFree 17.15 -TCGA-EW-A1OW 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-EW-A1OX 0:LIVING 18.46 0:DiseaseFree 18.46 -TCGA-EW-A1OY 0:LIVING 19.48 0:DiseaseFree 19.48 -TCGA-EW-A1OZ 0:LIVING 30.91 0:DiseaseFree 30.91 -TCGA-EW-A1P0 0:LIVING 36.83 1:Recurred/Progressed NA -TCGA-EW-A1P1 0:LIVING 30.19 1:Recurred/Progressed NA -TCGA-EW-A1P3 0:LIVING 32.43 0:DiseaseFree 32.43 -TCGA-EW-A1P4 0:LIVING 16.46 0:DiseaseFree 16.46 -TCGA-EW-A1P5 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-EW-A1P6 0:LIVING 10.25 0:DiseaseFree 10.25 -TCGA-EW-A1P7 0:LIVING 20.86 0:DiseaseFree 20.86 -TCGA-EW-A1PA 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-EW-A1PB 0:LIVING 19.97 0:DiseaseFree 19.97 -TCGA-EW-A1PD 0:LIVING 5.72 0:DiseaseFree 5.72 -TCGA-EW-A1PE 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PF 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PG 0:LIVING 28.75 0:DiseaseFree 28.75 -TCGA-EW-A1PH 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A2FS NA NA NA NA -TCGA-EW-A2FV NA NA NA NA -TCGA-EW-A2FW NA NA NA NA -TCGA-GM-A2DA 0:LIVING 194.13 1:Recurred/Progressed NA -TCGA-GM-A2DB 0:LIVING 53.06 0:DiseaseFree 53.06 -TCGA-GM-A2DC 0:LIVING 53.49 0:DiseaseFree 53.49 -TCGA-GM-A2DD 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-GM-A2DF 0:LIVING 42.68 0:DiseaseFree 42.68 -TCGA-GM-A2DH 0:LIVING 42.25 0:DiseaseFree 42.25 -TCGA-GM-A2DI 0:LIVING 61.86 0:DiseaseFree 61.86 -TCGA-GM-A2DK 0:LIVING 62.29 0:DiseaseFree 62.29 -TCGA-GM-A2DL 0:LIVING 90.74 0:DiseaseFree 90.74 -TCGA-GM-A2DM 0:LIVING 76.58 0:DiseaseFree 76.58 -TCGA-GM-A2DN 0:LIVING 77.27 0:DiseaseFree 77.27 -TCGA-GM-A2DO 0:LIVING 53.29 0:DiseaseFree 53.29 -TCGA-AR-A24W NA NA NA NA -TCGA-AC-A2B8 NA NA NA NA -TCGA-AC-A2FF NA NA NA NA -TCGA-AC-A2FB NA NA NA NA -TCGA-AC-A2FG NA NA NA NA -TCGA-GI-A2C8 NA NA NA NA -TCGA-E9-A295 NA NA NA NA diff --git a/core/src/test/scripts/test_data/study_various_issues/data_samples.txt b/core/src/test/scripts/test_data/study_various_issues/data_samples.txt deleted file mode 100644 index af1e447989d..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/data_samples.txt +++ /dev/null @@ -1,831 +0,0 @@ -#Patient Identifier Sample Identifier Subtype -#Patient identifier Sample identifier Subtype description -#STRING STRING STRING -#1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like -TCGA-A7-A13E TCGA-A7-A13E-01 NA -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like -TCGA-D8-A142 TCGA-D8-A142-01 basal-like -TCGA-D8-A143 TCGA-D8-A143-01 NA -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like -TCGA-A2-A04U TCGA-A2-A04U-01 NA -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like -TCGA-A2-A04T TCGA-A2-A04T-01 NA -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like -TCGA-AO-A128 TCGA-AO-A128-01 NA -TCGA-AO-A129 TCGA-AO-A129-01 basal-like -TCGA-AO-A124 TCGA-AO-A124-01 basal-like -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like -TCGA-BH-A18G TCGA-BH-A18G-01 NA -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like -TCGA-C8-A131 TCGA-C8-A131-01 basal-like -TCGA-C8-A134 TCGA-C8-A134-01 basal-like -TCGA-D8-A147 TCGA-D8-A147-01 basal-like -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like -TCGA-E2-A150 TCGA-E2-A150-01 basal-like -TCGA-E2-A158 TCGA-E2-A158-01 basal-like -TCGA-E2-A159 TCGA-E2-A159-01 basal-like -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A -TCGA-A7-A0CD TCGA-A7-A0CD-01 Luminal A -TCGA-D8-A145 TCGA-D8-A145-01 Luminal A -TCGA-BH-A0HP TCGA-BH-A0HP-01 Luminal A -TCGA-BH-A0DK TCGA-BH-A0DK-01 Luminal A -TCGA-BH-A0E2 TCGA-BH-A0E2-01 Luminal A -TCGA-A2-A0YI TCGA-A2-A0YI-01 Luminal A -TCGA-A2-A0YL TCGA-A2-A0YL-01 Luminal A -TCGA-AO-A0JG TCGA-AO-A0JG-01 Luminal A -TCGA-A2-A0YF TCGA-A2-A0YF-01 Luminal A -TCGA-BH-A0DP TCGA-BH-A0DP-01 Luminal A -TCGA-BH-A0E1 TCGA-BH-A0E1-01 Luminal A -TCGA-A2-A0T5 TCGA-A2-A0T5-01 Luminal A -TCGA-A2-A0T6 TCGA-A2-A0T6-01 Luminal A -TCGA-BH-A0HI TCGA-BH-A0HI-01 Luminal A -TCGA-A2-A0T7 TCGA-A2-A0T7-01 Luminal A -TCGA-BH-A0BJ TCGA-BH-A0BJ-01 Luminal A -TCGA-BH-A0H7 TCGA-BH-A0H7-01 Luminal A -TCGA-BH-A0HF TCGA-BH-A0HF-01 Luminal A -TCGA-BH-A0EB TCGA-BH-A0EB-01 Luminal A -TCGA-BH-A0H6 TCGA-BH-A0H6-01 Luminal A -TCGA-A2-A0YD TCGA-A2-A0YD-01 Luminal A -TCGA-BH-A0HB TCGA-BH-A0HB-01 Luminal A -TCGA-BH-A0HX TCGA-BH-A0HX-01 Luminal A -TCGA-AO-A12H TCGA-AO-A12H-01 Luminal A -TCGA-E2-A10E TCGA-E2-A10E-01 Luminal A -TCGA-A2-A0D3 TCGA-A2-A0D3-01 Luminal A -TCGA-E2-A10F TCGA-E2-A10F-01 Luminal A -TCGA-AO-A03V TCGA-AO-A03V-01 Luminal A -TCGA-A2-A0EW TCGA-A2-A0EW-01 Luminal A -TCGA-BH-A0GY TCGA-BH-A0GY-01 Luminal A -TCGA-A2-A0EV TCGA-A2-A0EV-01 Luminal A -TCGA-BH-A0BC TCGA-BH-A0BC-01 Luminal A -TCGA-A2-A0YC TCGA-A2-A0YC-01 Luminal A -TCGA-A2-A0EU TCGA-A2-A0EU-01 Luminal A -TCGA-A2-A0ET TCGA-A2-A0ET-01 Luminal A -TCGA-A2-A04Y TCGA-A2-A04Y-01 Luminal A -TCGA-BH-A0HQ TCGA-BH-A0HQ-01 Luminal A -TCGA-A2-A0ES TCGA-A2-A0ES-01 Luminal A -TCGA-BH-A0BA TCGA-BH-A0BA-01 Luminal A -TCGA-E2-A10B TCGA-E2-A10B-01 Luminal A -TCGA-BH-A0B1 TCGA-BH-A0B1-01 Luminal A -TCGA-BH-A0DH TCGA-BH-A0DH-01 Luminal A -TCGA-BH-A0B4 TCGA-BH-A0B4-01 Luminal A -TCGA-BH-A0H9 TCGA-BH-A0H9-01 Luminal A -TCGA-AO-A0J9 TCGA-AO-A0J9-01 Luminal A -TCGA-AO-A12G TCGA-AO-A12G-01 Luminal A -TCGA-A2-A0SY TCGA-A2-A0SY-01 Luminal A -TCGA-BH-A0E7 TCGA-BH-A0E7-01 Luminal A -TCGA-AO-A03M TCGA-AO-A03M-01 Luminal A -TCGA-BH-A0BV TCGA-BH-A0BV-01 Luminal A -TCGA-BH-A0B8 TCGA-BH-A0B8-01 Luminal A -TCGA-A2-A0CZ TCGA-A2-A0CZ-01 Luminal A -TCGA-A2-A0SU TCGA-A2-A0SU-01 Luminal A -TCGA-AO-A12E TCGA-AO-A12E-01 Luminal A -TCGA-E2-A106 TCGA-E2-A106-01 Luminal A -TCGA-A2-A0CV TCGA-A2-A0CV-01 Luminal A -TCGA-AO-A12C TCGA-AO-A12C-01 Luminal A -TCGA-B6-A0RG TCGA-B6-A0RG-01 Luminal A -TCGA-A2-A0CS TCGA-A2-A0CS-01 Luminal A -TCGA-A2-A0EO TCGA-A2-A0EO-01 Luminal A -TCGA-A2-A0CQ TCGA-A2-A0CQ-01 Luminal A -TCGA-A2-A0EN TCGA-A2-A0EN-01 Luminal A -TCGA-AO-A12A TCGA-AO-A12A-01 Luminal A -TCGA-A2-A0CP TCGA-A2-A0CP-01 Luminal A -TCGA-AO-A126 TCGA-AO-A126-01 Luminal A -TCGA-AO-A125 TCGA-AO-A125-01 Luminal A -TCGA-A2-A0EM TCGA-A2-A0EM-01 Luminal A -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A -TCGA-AQ-A04L TCGA-AQ-A04L-01 Luminal A -TCGA-B6-A0IO TCGA-B6-A0IO-01 Luminal A -TCGA-B6-A0IP TCGA-B6-A0IP-01 Luminal A -TCGA-B6-A0WZ TCGA-B6-A0WZ-01 Luminal A -TCGA-B6-A0I5 TCGA-B6-A0I5-01 Luminal A -TCGA-B6-A0RV TCGA-B6-A0RV-01 Luminal A -TCGA-B6-A0RO TCGA-B6-A0RO-01 Luminal A -TCGA-B6-A0RN TCGA-B6-A0RN-01 Luminal A -TCGA-B6-A0WT TCGA-B6-A0WT-01 Luminal A -TCGA-B6-A0IA TCGA-B6-A0IA-01 Luminal A -TCGA-B6-A0RI TCGA-B6-A0RI-01 Luminal A -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A -TCGA-A2-A0EX TCGA-A2-A0EX-01 Luminal A -TCGA-AO-A0JJ TCGA-AO-A0JJ-01 Luminal A -TCGA-E2-A105 TCGA-E2-A105-01 Luminal A -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A -TCGA-A8-A06P TCGA-A8-A06P-01 Luminal A -TCGA-A8-A06T TCGA-A8-A06T-01 Luminal A -TCGA-A8-A06Y TCGA-A8-A06Y-01 Luminal A -TCGA-A8-A07E TCGA-A8-A07E-01 Luminal A -TCGA-A8-A07F TCGA-A8-A07F-01 Luminal A -TCGA-A8-A07G TCGA-A8-A07G-01 Luminal A -TCGA-A8-A07J TCGA-A8-A07J-01 Luminal A -TCGA-A8-A07P TCGA-A8-A07P-01 Luminal A -TCGA-A8-A083 TCGA-A8-A083-01 Luminal A -TCGA-A8-A086 TCGA-A8-A086-01 Luminal A -TCGA-A8-A08A TCGA-A8-A08A-01 Luminal A -TCGA-A8-A08C TCGA-A8-A08C-01 Luminal A -TCGA-A8-A08O TCGA-A8-A08O-01 Luminal A -TCGA-A8-A08T TCGA-A8-A08T-01 Luminal A -TCGA-A8-A08Z TCGA-A8-A08Z-01 Luminal A -TCGA-A8-A090 TCGA-A8-A090-01 Luminal A -TCGA-A8-A091 TCGA-A8-A091-01 Luminal A -TCGA-A8-A093 TCGA-A8-A093-01 Luminal A -TCGA-A8-A099 TCGA-A8-A099-01 Luminal A -TCGA-A8-A09A TCGA-A8-A09A-01 Luminal A -TCGA-A8-A09B TCGA-A8-A09B-01 Luminal A -TCGA-A8-A09T TCGA-A8-A09T-01 Luminal A -TCGA-A8-A09V TCGA-A8-A09V-01 Luminal A -TCGA-A8-A0A1 TCGA-A8-A0A1-01 Luminal A -TCGA-A8-A0A2 TCGA-A8-A0A2-01 Luminal A -TCGA-A8-A0A4 TCGA-A8-A0A4-01 Luminal A -TCGA-A8-A0A6 TCGA-A8-A0A6-01 Luminal A -TCGA-A8-A0AD TCGA-A8-A0AD-01 Luminal A -TCGA-AN-A03X TCGA-AN-A03X-01 Luminal A -TCGA-AN-A046 TCGA-AN-A046-01 Luminal A -TCGA-AN-A04A TCGA-AN-A04A-01 Luminal A -TCGA-AN-A0FD TCGA-AN-A0FD-01 Luminal A -TCGA-AN-A0FN TCGA-AN-A0FN-01 Luminal A -TCGA-AN-A0FS TCGA-AN-A0FS-01 Luminal A -TCGA-AN-A0FT TCGA-AN-A0FT-01 Luminal A -TCGA-AN-A0FW TCGA-AN-A0FW-01 Luminal A -TCGA-AN-A0FZ TCGA-AN-A0FZ-01 Luminal A -TCGA-AN-A0XL TCGA-AN-A0XL-01 Luminal A -TCGA-AN-A0XN TCGA-AN-A0XN-01 Luminal A -TCGA-AN-A0XO TCGA-AN-A0XO-01 Luminal A -TCGA-AN-A0XP TCGA-AN-A0XP-01 Luminal A -TCGA-AN-A0XS TCGA-AN-A0XS-01 Luminal A -TCGA-AN-A0XT TCGA-AN-A0XT-01 Luminal A -TCGA-AN-A0XV TCGA-AN-A0XV-01 Luminal A -TCGA-AR-A0TW TCGA-AR-A0TW-01 Luminal A -TCGA-AR-A1AK TCGA-AR-A1AK-01 Luminal A -TCGA-AR-A1AL TCGA-AR-A1AL-01 Luminal A -TCGA-AR-A1AN TCGA-AR-A1AN-01 Luminal A -TCGA-AR-A1AP TCGA-AR-A1AP-01 Luminal A -TCGA-AR-A1AS TCGA-AR-A1AS-01 Luminal A -TCGA-AR-A1AU TCGA-AR-A1AU-01 Luminal A -TCGA-AR-A1AW TCGA-AR-A1AW-01 Luminal A -TCGA-AR-A1AX TCGA-AR-A1AX-01 Luminal A -TCGA-BH-A0AZ TCGA-BH-A0AZ-01 Luminal A -TCGA-BH-A0B0 TCGA-BH-A0B0-01 Luminal A -TCGA-BH-A0BM TCGA-BH-A0BM-01 Luminal A -TCGA-BH-A0BO TCGA-BH-A0BO-01 Luminal A -TCGA-BH-A0BP TCGA-BH-A0BP-01 Luminal A -TCGA-BH-A0BQ TCGA-BH-A0BQ-01 Luminal A -TCGA-BH-A0BR TCGA-BH-A0BR-01 Luminal A -TCGA-BH-A0BS TCGA-BH-A0BS-01 Luminal A -TCGA-BH-A0BT TCGA-BH-A0BT-01 Luminal A -TCGA-BH-A0C1 TCGA-BH-A0C1-01 Luminal A -TCGA-BH-A0DE TCGA-BH-A0DE-01 Luminal A -TCGA-BH-A0DG TCGA-BH-A0DG-01 Luminal A -TCGA-BH-A0DI TCGA-BH-A0DI-01 Luminal A -TCGA-BH-A0DO TCGA-BH-A0DO-01 Luminal A -TCGA-BH-A0DT TCGA-BH-A0DT-01 Luminal A -TCGA-BH-A0DX TCGA-BH-A0DX-01 Luminal A -TCGA-BH-A0E9 TCGA-BH-A0E9-01 Luminal A -TCGA-BH-A0EI TCGA-BH-A0EI-01 Luminal A -TCGA-BH-A0H3 TCGA-BH-A0H3-01 Luminal A -TCGA-BH-A0H5 TCGA-BH-A0H5-01 Luminal A -TCGA-BH-A0HA TCGA-BH-A0HA-01 Luminal A -TCGA-BH-A0W4 TCGA-BH-A0W4-01 Luminal A -TCGA-BH-A0W5 TCGA-BH-A0W5-01 Luminal A -TCGA-BH-A0W7 TCGA-BH-A0W7-01 Luminal A -TCGA-BH-A18H TCGA-BH-A18H-01 Luminal A -TCGA-BH-A18I TCGA-BH-A18I-01 Luminal A -TCGA-C8-A12N TCGA-C8-A12N-01 Luminal A -TCGA-C8-A12O TCGA-C8-A12O-01 Luminal A -TCGA-C8-A12Y TCGA-C8-A12Y-01 Luminal A -TCGA-C8-A132 TCGA-C8-A132-01 Luminal A -TCGA-C8-A133 TCGA-C8-A133-01 Luminal A -TCGA-C8-A1HI TCGA-C8-A1HI-01 Luminal A -TCGA-D8-A141 TCGA-D8-A141-01 Luminal A -TCGA-E2-A14Q TCGA-E2-A14Q-01 Luminal A -TCGA-E2-A14T TCGA-E2-A14T-01 Luminal A -TCGA-E2-A14Z TCGA-E2-A14Z-01 Luminal A -TCGA-E2-A153 TCGA-E2-A153-01 Luminal A -TCGA-E2-A154 TCGA-E2-A154-01 Luminal A -TCGA-E2-A156 TCGA-E2-A156-01 Luminal A -TCGA-E2-A15C TCGA-E2-A15C-01 Luminal A -TCGA-E2-A15D TCGA-E2-A15D-01 Luminal A -TCGA-E2-A15E TCGA-E2-A15E-01 Luminal A -TCGA-E2-A15F TCGA-E2-A15F-01 Luminal A -TCGA-E2-A15G TCGA-E2-A15G-01 Luminal A -TCGA-E2-A15H TCGA-E2-A15H-01 Luminal A -TCGA-E2-A15I TCGA-E2-A15I-01 Luminal A -TCGA-E2-A15J TCGA-E2-A15J-01 Luminal A -TCGA-E2-A15O TCGA-E2-A15O-01 Luminal A -TCGA-E2-A15P TCGA-E2-A15P-01 Luminal A -TCGA-E2-A15R TCGA-E2-A15R-01 Luminal A -TCGA-E2-A1B1 TCGA-E2-A1B1-01 Luminal A -TCGA-E2-A1B4 TCGA-E2-A1B4-01 Luminal A -TCGA-E2-A1B6 TCGA-E2-A1B6-01 Luminal A -TCGA-E2-A1BC TCGA-E2-A1BC-01 Luminal A -TCGA-E2-A1BD TCGA-E2-A1BD-01 Luminal A -TCGA-A2-A0SV TCGA-A2-A0SV-01 Luminal B -TCGA-AO-A03O TCGA-AO-A03O-01 Luminal B -TCGA-A2-A0SW TCGA-A2-A0SW-01 Luminal B -TCGA-B6-A0WW TCGA-B6-A0WW-01 Luminal B -TCGA-BH-A18J TCGA-BH-A18J-01 Luminal B -TCGA-BH-A18L TCGA-BH-A18L-01 Luminal B -TCGA-A8-A06X TCGA-A8-A06X-01 Luminal B -TCGA-B6-A0IC TCGA-B6-A0IC-01 Luminal B -TCGA-BH-A18U TCGA-BH-A18U-01 Luminal B -TCGA-BH-A1EW TCGA-BH-A1EW-01 Luminal B -TCGA-AR-A0TY TCGA-AR-A0TY-01 Luminal B -TCGA-B6-A0X5 TCGA-B6-A0X5-01 Luminal B -TCGA-B6-A0WV TCGA-B6-A0WV-01 Luminal B -TCGA-B6-A0RL TCGA-B6-A0RL-01 Luminal B -TCGA-AR-A0U2 TCGA-AR-A0U2-01 Luminal B -TCGA-B6-A0IB TCGA-B6-A0IB-01 Luminal B -TCGA-AO-A0J7 TCGA-AO-A0J7-01 Luminal B -TCGA-AO-A0J3 TCGA-AO-A0J3-01 Luminal B -TCGA-D8-A13Y TCGA-D8-A13Y-01 Luminal B -TCGA-A7-A13F TCGA-A7-A13F-01 Luminal B -TCGA-BH-A0HU TCGA-BH-A0HU-01 Luminal B -TCGA-D8-A140 TCGA-D8-A140-01 Luminal B -TCGA-A7-A0CJ TCGA-A7-A0CJ-01 Luminal B -TCGA-AQ-A04H TCGA-AQ-A04H-01 Luminal B -TCGA-BH-A0H0 TCGA-BH-A0H0-01 Luminal B -TCGA-BH-A0BD TCGA-BH-A0BD-01 Luminal B -TCGA-A2-A0T3 TCGA-A2-A0T3-01 Luminal B -TCGA-A2-A0T4 TCGA-A2-A0T4-01 Luminal B -TCGA-A2-A0YH TCGA-A2-A0YH-01 Luminal B -TCGA-A2-A0YG TCGA-A2-A0YG-01 Luminal B -TCGA-A2-A0EY TCGA-A2-A0EY-01 Luminal B -TCGA-A2-A0D4 TCGA-A2-A0D4-01 Luminal B -TCGA-BH-A0AY TCGA-BH-A0AY-01 Luminal B -TCGA-E2-A107 TCGA-E2-A107-01 Luminal B -TCGA-AO-A0JI TCGA-AO-A0JI-01 Luminal B -TCGA-E2-A10C TCGA-E2-A10C-01 Luminal B -TCGA-E2-A10A TCGA-E2-A10A-01 Luminal B -TCGA-BH-A0C0 TCGA-BH-A0C0-01 Luminal B -TCGA-E2-A109 TCGA-E2-A109-01 Luminal B -TCGA-AO-A0JC TCGA-AO-A0JC-01 Luminal B -TCGA-BH-A0HW TCGA-BH-A0HW-01 Luminal B -TCGA-AO-A0JD TCGA-AO-A0JD-01 Luminal B -TCGA-AO-A0JM TCGA-AO-A0JM-01 Luminal B -TCGA-A2-A0CW TCGA-A2-A0CW-01 Luminal B -TCGA-A2-A0ER TCGA-A2-A0ER-01 Luminal B -TCGA-A2-A0CT TCGA-A2-A0CT-01 Luminal B -TCGA-AO-A12B TCGA-AO-A12B-01 Luminal B -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B -TCGA-B6-A0IM TCGA-B6-A0IM-01 Luminal B -TCGA-AO-A03P TCGA-AO-A03P-01 Luminal B -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B -TCGA-A8-A06N TCGA-A8-A06N-01 Luminal B -TCGA-A8-A06O TCGA-A8-A06O-01 Luminal B -TCGA-A8-A06Q TCGA-A8-A06Q-01 Luminal B -TCGA-A8-A06R TCGA-A8-A06R-01 Luminal B -TCGA-A8-A06Z TCGA-A8-A06Z-01 Luminal B -TCGA-A8-A079 TCGA-A8-A079-01 Luminal B -TCGA-A8-A07L TCGA-A8-A07L-01 Luminal B -TCGA-A8-A07S TCGA-A8-A07S-01 Luminal B -TCGA-A8-A07W TCGA-A8-A07W-01 Luminal B -TCGA-A8-A07Z TCGA-A8-A07Z-01 Luminal B -TCGA-A8-A082 TCGA-A8-A082-01 Luminal B -TCGA-A8-A084 TCGA-A8-A084-01 Luminal B -TCGA-A8-A085 TCGA-A8-A085-01 Luminal B -TCGA-A8-A08F TCGA-A8-A08F-01 Luminal B -TCGA-A8-A08G TCGA-A8-A08G-01 Luminal B -TCGA-A8-A08I TCGA-A8-A08I-01 Luminal B -TCGA-A8-A08P TCGA-A8-A08P-01 Luminal B -TCGA-A8-A095 TCGA-A8-A095-01 Luminal B -TCGA-A8-A096 TCGA-A8-A096-01 Luminal B -TCGA-A8-A097 TCGA-A8-A097-01 Luminal B -TCGA-A8-A09C TCGA-A8-A09C-01 Luminal B -TCGA-A8-A09D TCGA-A8-A09D-01 Luminal B -TCGA-A8-A09I TCGA-A8-A09I-01 Luminal B -TCGA-A8-A09M TCGA-A8-A09M-01 Luminal B -TCGA-A8-A09N TCGA-A8-A09N-01 Luminal B -TCGA-A8-A09Q TCGA-A8-A09Q-01 Luminal B -TCGA-A8-A09R TCGA-A8-A09R-01 Luminal B -TCGA-A8-A09W TCGA-A8-A09W-01 Luminal B -TCGA-A8-A09Z TCGA-A8-A09Z-01 Luminal B -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B -TCGA-AO-A03U TCGA-AO-A03U-01 NA -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA -TCGA-AO-A03R TCGA-AO-A03R-01 NA -TCGA-AO-A03T TCGA-AO-A03T-01 NA -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA -TCGA-BH-A203 TCGA-BH-A203-01 NA -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA -TCGA-BH-A208 TCGA-BH-A208-01 NA -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA -TCGA-BH-A204 TCGA-BH-A204-01 NA -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA -TCGA-AR-A256 TCGA-AR-A256-01 NA -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA -TCGA-BH-A209 TCGA-BH-A209-01 NA -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA -TCGA-A7-A13G TCGA-A7-A13G-01 NA -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA -TCGA-A7-A26E TCGA-A7-A26E-01 NA -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA -TCGA-A2-A259 TCGA-A2-A259-01 NA -TCGA-A2-A25A TCGA-A2-A25A-01 NA -TCGA-A2-A25B TCGA-A2-A25B-01 NA -TCGA-A2-A25C TCGA-A2-A25C-01 NA -TCGA-A2-A25D TCGA-A2-A25D-01 NA -TCGA-A2-A25E TCGA-A2-A25E-01 NA -TCGA-A2-A25F TCGA-A2-A25F-01 NA -TCGA-A7-A26F TCGA-A7-A26F-01 NA -TCGA-A7-A26G TCGA-A7-A26G-01 NA -TCGA-A7-A26H TCGA-A7-A26H-01 NA -TCGA-A7-A26I TCGA-A7-A26I-01 NA -TCGA-A7-A26J TCGA-A7-A26J-01 NA -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B -TCGA-AC-A23C TCGA-AC-A23C-01 NA -TCGA-AC-A23E TCGA-AC-A23E-01 NA -TCGA-AC-A23H TCGA-AC-A23H-01 NA -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA -TCGA-AR-A24H TCGA-AR-A24H-01 NA -TCGA-AR-A24K TCGA-AR-A24K-01 NA -TCGA-AR-A24L TCGA-AR-A24L-01 NA -TCGA-AR-A24M TCGA-AR-A24M-01 NA -TCGA-AR-A24N TCGA-AR-A24N-01 NA -TCGA-AR-A24O TCGA-AR-A24O-01 NA -TCGA-AR-A24P TCGA-AR-A24P-01 NA -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA -TCGA-AR-A24R TCGA-AR-A24R-01 NA -TCGA-AR-A24S TCGA-AR-A24S-01 NA -TCGA-AR-A24T TCGA-AR-A24T-01 NA -TCGA-AR-A24U TCGA-AR-A24U-01 NA -TCGA-AR-A24V TCGA-AR-A24V-01 NA -TCGA-AR-A24X TCGA-AR-A24X-01 NA -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA -TCGA-AR-A250 TCGA-AR-A250-01 NA -TCGA-AR-A251 TCGA-AR-A251-01 NA -TCGA-AR-A252 TCGA-AR-A252-01 NA -TCGA-AR-A254 TCGA-AR-A254-01 NA -TCGA-AR-A255 TCGA-AR-A255-01 NA -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA -TCGA-BH-A201 TCGA-BH-A201-01 NA -TCGA-BH-A202 TCGA-BH-A202-01 NA -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA -TCGA-C8-A26V TCGA-C8-A26V-01 NA -TCGA-C8-A26W TCGA-C8-A26W-01 NA -TCGA-C8-A26X TCGA-C8-A26X-01 NA -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA -TCGA-C8-A273 TCGA-C8-A273-01 NA -TCGA-C8-A274 TCGA-C8-A274-01 NA -TCGA-C8-A275 TCGA-C8-A275-01 NA -TCGA-C8-A278 TCGA-C8-A278-01 NA -TCGA-C8-A27A TCGA-C8-A27A-01 NA -TCGA-C8-A27B TCGA-C8-A27B-01 NA -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA -TCGA-D8-A27E TCGA-D8-A27E-01 NA -TCGA-D8-A27F TCGA-D8-A27F-01 NA -TCGA-D8-A27G TCGA-D8-A27G-01 NA -TCGA-D8-A27H TCGA-D8-A27H-01 NA -TCGA-D8-A27I TCGA-D8-A27I-01 NA -TCGA-D8-A27K TCGA-D8-A27K-01 NA -TCGA-D8-A27L TCGA-D8-A27L-01 NA -TCGA-D8-A27M TCGA-D8-A27M-01 NA -TCGA-D8-A27N TCGA-D8-A27N-01 NA -TCGA-D8-A27P TCGA-D8-A27P-01 NA -TCGA-D8-A27R TCGA-D8-A27R-01 NA -TCGA-D8-A27T TCGA-D8-A27T-01 NA -TCGA-D8-A27V TCGA-D8-A27V-01 NA -TCGA-D8-A27W TCGA-D8-A27W-01 NA -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA -TCGA-E2-A1II TCGA-E2-A1II-01 NA -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA -TCGA-E9-A226 TCGA-E9-A226-01 NA -TCGA-E9-A227 TCGA-E9-A227-01 NA -TCGA-E9-A228 TCGA-E9-A228-01 NA -TCGA-E9-A229 TCGA-E9-A229-01 NA -TCGA-E9-A22A TCGA-E9-A22A-01 NA -TCGA-E9-A22B TCGA-E9-A22B-01 NA -TCGA-E9-A22D TCGA-E9-A22D-01 NA -TCGA-E9-A22E TCGA-E9-A22E-01 NA -TCGA-E9-A22G TCGA-E9-A22G-01 NA -TCGA-E9-A22H TCGA-E9-A22H-01 NA -TCGA-E9-A243 TCGA-E9-A243-01 NA -TCGA-E9-A244 TCGA-E9-A244-01 NA -TCGA-E9-A245 TCGA-E9-A245-01 NA -TCGA-E9-A247 TCGA-E9-A247-01 NA -TCGA-E9-A248 TCGA-E9-A248-01 NA -TCGA-E9-A249 TCGA-E9-A249-01 NA -TCGA-E9-A24A TCGA-E9-A24A-01 NA -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA -TCGA-AR-A24W TCGA-AR-A24W-01 NA -TCGA-AC-A2B8 TCGA-AC-A2B8-01 NA -TCGA-AC-A2FF TCGA-AC-A2FF-01 NA -TCGA-AC-A2FB TCGA-AC-A2FB-01 NA -TCGA-AC-A2FG TCGA-AC-A2FG-01 NA -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA -TCGA-E9-A295 TCGA-E9-A295-01 NA -TCGA-E2-A15E TCGA-E2-A15E-06 NA -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA diff --git a/core/src/test/scripts/test_data/study_various_issues/error_file.txt b/core/src/test/scripts/test_data/study_various_issues/error_file.txt deleted file mode 100644 index dfe0d086222..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/error_file.txt +++ /dev/null @@ -1,10 +0,0 @@ ->data_patients.txt | ERROR: datatype definition for attribute 'DFS_MONTHS' must be NUMBER -3 ->data_patients.txt | ERROR: Value of numeric attribute is not a real number -536,540 ->brca_tcga_pub.maf | WARNING: Entrez gene id not known to the cBioPortal instance. This record will not be loaded. Might be new or deprecated Entrez gene id. -2,3,5,8,9,11,12,16 ->brca_tcga_pub.maf | ERROR: Normal sample id not in list of sample ids configured in corresponding metafile. Please check your metafile field 'normal_samples_list'. -8,9,11,12 ->brca_tcga_pub.maf | WARNING: Given value for Variant_Classification column is not one of the expected values. This can result in mapping issues and subsequent missing features in the mutation view UI, such as missing COSMIC information. -16 diff --git a/core/src/test/scripts/test_data/study_various_issues/meta_mutations_extended.txt b/core/src/test/scripts/test_data/study_various_issues/meta_mutations_extended.txt deleted file mode 100644 index bb41d75e38f..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/meta_mutations_extended.txt +++ /dev/null @@ -1,10 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: MUTATION_EXTENDED -datatype: MAF -stable_id: mutations -show_profile_in_analysis_tab: true -profile_description: Mutation data from whole exome sequencing. -profile_name: Mutations -data_filename: brca_tcga_pub.maf -normal_samples_list: TCGA-B6-A0RS-10,TCGA-BH-A0HP-10,TCGA-BH-A18P-11,TCGA-BH-A18H-10,TCGA-C8-A138-10,TCGA-BH-A0HP-10 -swissprot_identifier: accession diff --git a/core/src/test/scripts/test_data/study_various_issues/meta_patients.txt b/core/src/test/scripts/test_data/study_various_issues/meta_patients.txt deleted file mode 100644 index bc956265f29..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/meta_patients.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: PATIENT_ATTRIBUTES -stable_id: clinical -show_profile_in_analysis_tab: false -profile_description: Sample clinical data for this study. -profile_name: Sample clinical data for brca_tcga_pub. -data_filename: data_patients.txt diff --git a/core/src/test/scripts/test_data/study_various_issues/meta_samples.txt b/core/src/test/scripts/test_data/study_various_issues/meta_samples.txt deleted file mode 100644 index 7f19d43c7f2..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/meta_samples.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: SAMPLE_ATTRIBUTES -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_various_issues/meta_study.txt b/core/src/test/scripts/test_data/study_various_issues/meta_study.txt deleted file mode 100644 index c6a63249bbd..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/meta_study.txt +++ /dev/null @@ -1,7 +0,0 @@ -type_of_cancer: brca -cancer_study_identifier: brca_tcga_pub -name: Breast Invasive Carcinoma (TCGA, Nature 2012) -description: The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal. -citation: TCGA, Nature 2012 -pmid: 23000897 -groups: PUBLIC;GDAC;SU2C-PI3K diff --git a/core/src/test/scripts/test_data/study_various_issues/result_report.html b/core/src/test/scripts/test_data/study_various_issues/result_report.html deleted file mode 100644 index 336b2fbd2bc..00000000000 --- a/core/src/test/scripts/test_data/study_various_issues/result_report.html +++ /dev/null @@ -1,969 +0,0 @@ - - - - - - - - - - - - - cBioPortal validation report: study in 'test_data/study_various_issues/' - - - - - -
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    cBioPortal validation report

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    Study directory:
    test_data/study_various_issues/

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    For details, please see the documentation on file formats supported by cBioPortal

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    cBioPortal version unknown -- offline instance

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    Debug––Reading portal information from test_data/api_json_system_tests/cancer-types.json–
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    Debug––Reading portal information from test_data/api_json_system_tests/genesets.json–
    Debug––Reading portal information from test_data/api_json_system_tests/genesets_version.json–
    Debug––Reading portal information from test_data/api_json_system_tests/gene-panels.json–
    Debug––Reading portal information from test_data/api_json_system_tests/genesaliases.json–
    Debug––Validating case lists–
    Info––Validation of case list folder complete–
    Error––No case list found with stable_id 'brca_tcga_pub_all', consider adding 'add_global_case_list: true' to the meta_study.txt file–
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    Warning2, 3, 5…–Entrez gene id not known to the cBioPortal instance. This record will not be loaded. Might be new or deprecated Entrez gene id.29974, 2, 144568 - See all 8 values - -
    Info4, 6, 7…–Line will not be loaded due to the variant classification filter. Filtered types: [Silent, Intron, 3'UTR, 3'Flank, 5'UTR, 5'Flank, IGR, RNA]Silent - See all 7 values - -
    Error8, 9, 11…17Normal sample id not in list of sample ids configured in corresponding metafile. Please check your metafile field 'normal_samples_list'.TCGA-A8-A08G-10, TCGA-B6-A0IQ-10, TCGA-A1-A0SO-10… - See all 4 values - -
    Warning16–Given value for Variant_Classification column is not one of the expected values. This can result in mapping issues and subsequent missing features in the mutation view UI, such as missing COSMIC information.Missense_mUtAtioN
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    Error35datatype definition for attribute 'DFS_MONTHS' must be NUMBERSTRING
    Error536, 5403
    Column names: OS_MONTHS    		Value of numeric attribute is not a real numberTEST
    Warning––Missing clinical data for a patient associated with samplesTCGA-A2-A0T2
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    Legend

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    ErrorError: cBioPortal will not know how to load this, please revise or remove
    WarningWarning: possible cause of confusion, please check whether this is intended
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    DebugVerbose output: details on the progress of the validation script
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    - - \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_wr_clin/cancer_type.txt b/core/src/test/scripts/test_data/study_wr_clin/cancer_type.txt deleted file mode 100644 index 938ccf6d632..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/cancer_type.txt +++ /dev/null @@ -1 +0,0 @@ -brca-ben Breast Invasive Carcinoma HotPink Breast diff --git a/core/src/test/scripts/test_data/study_wr_clin/data_expression_median.txt b/core/src/test/scripts/test_data/study_wr_clin/data_expression_median.txt deleted file mode 100644 index 15c7ba8bfc7..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/data_expression_median.txt +++ /dev/null @@ -1,7 +0,0 @@ -Hugo_Symbol Entrez_Gene_Id TEST2-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A1-A0SJ-01 TCGA-A1-A0SK-01 TCGA-A1-A0SM-01 TCGA-A1-A0SO-01 TCGA-A1-A0SP-01 TCGA-A2-A04N-01 TCGA-A2-A04P-01 TCGA-A2-A04Q-01 TCGA-A2-A04R-01 TCGA-A2-A04T-01 TCGA-A2-A04U-01 TCGA-A2-A04V-01 TCGA-A2-A04W-01 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0.65675 1.045 -0.124 -0.07 0.15975 -0.26125 -0.02725 -1.1205 -0.40575 -0.1075 -0.05475 -0.27925 0.903 0.7085 1.27775 0.917 0.4055 1.32325 diff --git a/core/src/test/scripts/test_data/study_wr_clin/data_patients.txt b/core/src/test/scripts/test_data/study_wr_clin/data_patients.txt deleted file mode 100644 index ba3c8160d8a..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/data_patients.txt +++ /dev/null @@ -1,829 +0,0 @@ -#Patient Identifier Overall Survival Status Overall Survival (Months) DiseaseXXX Free Status Disease Free (Months) -#Patient identifier Overall survival status Overall survival in months since diagnosis Disease free status Disease free in months since treatment -#STRING STRING NUMBER STRING NUMBER -#1 1 1 1 1 -PATIENT_ID OS_STATUS OS_MONTHS DFS_STATUS spam -TCGA-A2-A04P 1:DECEASED 17.97 1:Recurred/Progressed NA -TCGA-A1-A0SK 1:DECEASED 31.77 NA NA -TCGA-A2-A0CM 1:DECEASED 24.77 1:Recurred/Progressed NA -TCGA-AR-A1AR 1:DECEASED 17.18 NA NA -TCGA-B6-A0WX 1:DECEASED 21.45 1:Recurred/Progressed NA -TCGA-BH-A1F0 1:DECEASED 25.79 1:Recurred/Progressed NA -TCGA-B6-A0I6 1:DECEASED 32.56 1:Recurred/Progressed NA -TCGA-BH-A18V 1:DECEASED 51.09 NA NA -TCGA-BH-A18Q 1:DECEASED 55.59 NA NA -TCGA-BH-A18K 1:DECEASED 90.74 1:Recurred/Progressed NA -TCGA-BH-A0HL 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-BH-A0E0 0:LIVING 4.37 0:DiseaseFree 4.37 -TCGA-BH-A0RX 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-A7-A13D 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-BH-A0E6 0:LIVING 9.59 0:DiseaseFree 9.59 -TCGA-AO-A0J4 0:LIVING 9.66 0:DiseaseFree 9.66 -TCGA-A7-A0CE 0:LIVING 8.31 0:DiseaseFree 8.31 -TCGA-A7-A13E 0:LIVING 9.43 0:DiseaseFree 9.43 -TCGA-A7-A0DA 0:LIVING 12.25 0:DiseaseFree 12.25 -TCGA-D8-A142 0:LIVING 2 0:DiseaseFree 2 -TCGA-D8-A143 0:LIVING 5.65 0:DiseaseFree 5.65 -TCGA-AQ-A04J 0:LIVING 5.22 0:DiseaseFree 5.22 -TCGA-BH-A0HN 0:LIVING 16.95 0:DiseaseFree 16.95 -TCGA-A2-A0T0 0:LIVING 11.07 0:DiseaseFree 11.07 -TCGA-A2-A0YE 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-A2-A0YJ 0:LIVING 10.71 0:DiseaseFree 10.71 -TCGA-A2-A0D0 0:LIVING 21.12 0:DiseaseFree 21.12 -TCGA-A2-A04U 0:LIVING 22.01 0:DiseaseFree 22.01 -TCGA-AO-A0J6 0:LIVING 25.46 0:DiseaseFree 25.46 -TCGA-A2-A0YM 0:LIVING 21.72 0:DiseaseFree 21.72 -TCGA-A2-A0D2 0:LIVING 25 0:DiseaseFree 25 -TCGA-BH-A0B3 0:LIVING 39.52 0:DiseaseFree 39.52 -TCGA-A2-A04Q 0:LIVING 41.89 0:DiseaseFree 41.89 -TCGA-A2-A0SX 0:LIVING 42.32 1:Recurred/Progressed NA -TCGA-AO-A0JL 0:LIVING 43.33 0:DiseaseFree 43.33 -TCGA-AO-A12F 0:LIVING 48.33 0:DiseaseFree 48.33 -TCGA-BH-A0B9 0:LIVING 51.65 0:DiseaseFree 51.65 -TCGA-A2-A04T 0:LIVING 64.06 0:DiseaseFree 64.06 -TCGA-B6-A0RT 0:LIVING 89.39 0:DiseaseFree 89.39 -TCGA-AO-A128 0:LIVING 94.52 0:DiseaseFree 94.52 -TCGA-AO-A129 0:LIVING 96.03 0:DiseaseFree 96.03 -TCGA-AO-A124 0:LIVING 102.47 0:DiseaseFree 102.47 -TCGA-B6-A0RU 0:LIVING 131.12 0:DiseaseFree 131.12 -TCGA-B6-A0IQ 0:LIVING 127.18 0:DiseaseFree 127.18 -TCGA-B6-A0I2 0:LIVING 125.7 0:DiseaseFree 125.7 -TCGA-B6-A0IJ 0:LIVING 176.85 0:DiseaseFree 176.85 -TCGA-B6-A0X1 0:LIVING 186.31 0:DiseaseFree 186.31 -TCGA-B6-A0RE 0:LIVING 211.38 0:DiseaseFree 211.38 -TCGA-A2-A0ST 0:LIVING 53.98 0:DiseaseFree 53.98 -TCGA-AR-A0TP 0:LIVING 78.59 0:DiseaseFree 78.59 -TCGA-A1-A0SO 0:LIVING 27.99 0:DiseaseFree 27.99 -TCGA-A8-A07C 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A07O 0:LIVING 9.99 0:DiseaseFree 9.99 -TCGA-A8-A07R 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-A8-A07U 0:LIVING 9.95 0:DiseaseFree 9.95 -TCGA-A8-A08H 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08R 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04D 0:LIVING 1.71 0:DiseaseFree 1.71 -TCGA-AN-A0AL 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-AN-A0AR 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-AN-A0AT 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0FJ 0:LIVING 7.92 0:DiseaseFree 7.92 -TCGA-AN-A0FL 0:LIVING 7.56 0:DiseaseFree 7.56 -TCGA-AN-A0FX 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AN-A0G0 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-AN-A0XU 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AR-A0TS 0:LIVING 37.39 0:DiseaseFree 37.39 -TCGA-AR-A0TU 0:LIVING 11.83 0:DiseaseFree 11.83 -TCGA-AR-A0U0 0:LIVING 0.26 0:DiseaseFree 0.26 -TCGA-AR-A0U1 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-AR-A0U4 0:LIVING 53.45 0:DiseaseFree 53.45 -TCGA-AR-A1AH 0:LIVING 75.5 0:DiseaseFree 75.5 -TCGA-AR-A1AI 0:LIVING 61.8 0:DiseaseFree 61.8 -TCGA-AR-A1AJ 0:LIVING 52.7 0:DiseaseFree 52.7 -TCGA-AR-A1AQ 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-AR-A1AY 0:LIVING 20.17 0:DiseaseFree 20.17 -TCGA-BH-A0AV 0:LIVING 38.77 0:DiseaseFree 38.77 -TCGA-BH-A0BG 0:LIVING 24.84 0:DiseaseFree 24.84 -TCGA-BH-A0BL 0:LIVING 43.99 0:DiseaseFree 43.99 -TCGA-BH-A0BW 0:LIVING 11.66 0:DiseaseFree 11.66 -TCGA-BH-A0DL 0:LIVING 48.2 0:DiseaseFree 48.2 -TCGA-BH-A0WA 0:LIVING 12.22 0:DiseaseFree 12.22 -TCGA-BH-A18G 0:LIVING 2 0:DiseaseFree 2 -TCGA-C8-A12K 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12V 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A131 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A134 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A147 0:LIVING 0.07 0:DiseaseFree 0.07 -TCGA-E2-A14N 0:LIVING 44.35 0:DiseaseFree 44.35 -TCGA-E2-A14R 0:LIVING 27.76 0:DiseaseFree 27.76 -TCGA-E2-A14X 0:LIVING 22.73 0:DiseaseFree 22.73 -TCGA-E2-A14Y 0:LIVING 22.6 0:DiseaseFree 22.6 -TCGA-E2-A150 0:LIVING 19.42 0:DiseaseFree 19.42 -TCGA-E2-A158 0:LIVING 14.78 0:DiseaseFree 14.78 -TCGA-E2-A159 0:LIVING 16.92 0:DiseaseFree 16.92 -TCGA-E2-A1AZ 0:LIVING 64.52 0:DiseaseFree 64.52 -TCGA-E2-A1B5 0:LIVING 25.43 0:DiseaseFree 25.43 -TCGA-A8-A08L 1:DECEASED 9.99 NA NA -TCGA-BH-A1EV 1:DECEASED 11.99 1:Recurred/Progressed NA -TCGA-B6-A0I9 1:DECEASED 12.12 1:Recurred/Progressed NA -TCGA-A8-A09X 1:DECEASED 14 NA NA -TCGA-B6-A0IK 1:DECEASED 18.76 1:Recurred/Progressed NA -TCGA-BH-A18P 1:DECEASED 30.26 1:Recurred/Progressed NA -TCGA-A8-A08J 1:DECEASED 37.03 NA NA -TCGA-BH-A18R 1:DECEASED 37.49 0:DiseaseFree 36.11 -TCGA-AR-A1AT 1:DECEASED 41.79 NA NA -TCGA-B6-A0RS 1:DECEASED 100.6 1:Recurred/Progressed NA -TCGA-BH-A0DZ 0:LIVING 16.26 0:DiseaseFree 16.26 -TCGA-A2-A0T1 0:LIVING 10.58 0:DiseaseFree 10.58 -TCGA-AO-A0J2 0:LIVING 19.22 0:DiseaseFree 19.22 -TCGA-BH-A0AW 0:LIVING 20.43 0:DiseaseFree 20.43 -TCGA-BH-A0EE 0:LIVING 30.98 0:DiseaseFree 30.98 -TCGA-A2-A0D1 0:LIVING 25.82 0:DiseaseFree 25.82 -TCGA-AO-A03N 0:LIVING 54.04 1:Recurred/Progressed NA -TCGA-A2-A0CY 0:LIVING 42.32 0:DiseaseFree 42.32 -TCGA-A2-A04X 0:LIVING 44.32 0:DiseaseFree 44.32 -TCGA-A2-A0CX 0:LIVING 42.81 0:DiseaseFree 42.81 -TCGA-A2-A04W 0:LIVING 63.01 0:DiseaseFree 63.01 -TCGA-AO-A12D 0:LIVING 64 0:DiseaseFree 64 -TCGA-A2-A0CL 0:LIVING 60.02 0:DiseaseFree 60.02 -TCGA-AO-A0JE 0:LIVING 64.56 0:DiseaseFree 64.56 -TCGA-A2-A0EQ 0:LIVING 67.45 0:DiseaseFree 67.45 -TCGA-AO-A03L 0:LIVING 80.23 0:DiseaseFree 80.23 -TCGA-B6-A0RH 0:LIVING 188.84 0:DiseaseFree 188.84 -TCGA-A8-A075 0:LIVING 16.99 0:DiseaseFree 16.99 -TCGA-A8-A076 0:LIVING 53.91 0:DiseaseFree 53.91 -TCGA-A8-A07B 0:LIVING 32.98 0:DiseaseFree 32.98 -TCGA-A8-A07I 0:LIVING 14 0:DiseaseFree 14 -TCGA-A8-A081 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A08B 0:LIVING 23.06 0:DiseaseFree 23.06 -TCGA-A8-A08X 0:LIVING 33.97 0:DiseaseFree 33.97 -TCGA-A8-A092 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-A8-A094 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A09G 0:LIVING 0 0:DiseaseFree 0 -TCGA-A8-A0A7 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-AN-A04C 0:LIVING 1.77 0:DiseaseFree 1.77 -TCGA-AN-A0FV 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-AR-A0TX 0:LIVING 0.49 0:DiseaseFree 0.49 -TCGA-BH-A0B7 0:LIVING 56.93 0:DiseaseFree 56.93 -TCGA-BH-A0HY 0:LIVING 28.48 0:DiseaseFree 28.48 -TCGA-C8-A12L 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12P 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Q 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12T 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A12Z 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A130 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A135 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A137 0:LIVING 0.1 0:DiseaseFree 0.1 -TCGA-C8-A138 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A1HF 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A13Z 0:LIVING 6.9 0:DiseaseFree 6.9 -TCGA-E2-A14P 0:LIVING 16 0:DiseaseFree 16 -TCGA-E2-A14V 0:LIVING 24.57 0:DiseaseFree 24.57 -TCGA-E2-A152 0:LIVING 19.32 1:Recurred/Progressed NA -TCGA-E2-A1B0 0:LIVING 41.76 0:DiseaseFree 41.76 -TCGA-A2-A0CU 1:DECEASED 5.16 0:DiseaseFree 4.57 -TCGA-AR-A0TR 1:DECEASED 5.26 NA NA -TCGA-BH-A18T 1:DECEASED 7.36 1:Recurred/Progressed NA -TCGA-B6-A0I8 1:DECEASED 24.61 1:Recurred/Progressed NA -TCGA-B6-A0X4 1:DECEASED 28.22 1:Recurred/Progressed NA -TCGA-A8-A06U 1:DECEASED 28.98 NA NA -TCGA-BH-A0EA 1:DECEASED 32.62 0:DiseaseFree 27.3 -TCGA-BH-A18N 1:DECEASED 37.72 NA NA -TCGA-BH-A1EU 1:DECEASED 42.25 0:DiseaseFree NA -TCGA-B6-A0X7 1:DECEASED 58.84 NA NA -TCGA-A2-A04V 1:DECEASED 63.08 1:Recurred/Progressed NA -TCGA-BH-A18S 1:DECEASED 66 0:DiseaseFree 66 -TCGA-BH-A18M 1:DECEASED 72.51 NA NA -TCGA-B6-A0RM 1:DECEASED 77.96 0:DiseaseFree 77.96 -TCGA-BH-A1ET 1:DECEASED 82.79 0:DiseaseFree NA -TCGA-B6-A0IN 1:DECEASED 84.53 1:Recurred/Progressed NA -TCGA-BH-A1EO 1:DECEASED 91.92 0:DiseaseFree NA -TCGA-B6-A0WS 1:DECEASED 97.41 0:DiseaseFree NA -TCGA-B6-A0RP 1:DECEASED 102.7 NA NA -TCGA-B6-A0IH 1:DECEASED 112.29 NA NA -TCGA-B6-A0WY 1:DECEASED 113.67 1:Recurred/Progressed NA -TCGA-BH-A1ES 1:DECEASED 113.74 1:Recurred/Progressed NA -TCGA-B6-A0X0 1:DECEASED 129.61 NA NA -TCGA-B6-A0RQ 1:DECEASED 140.38 0:DiseaseFree NA -TCGA-B6-A0IG 1:DECEASED 146.39 1:Recurred/Progressed NA -TCGA-BH-A0HO 0:LIVING 2.5 0:DiseaseFree 2.5 -TCGA-BH-A0DS 0:LIVING 2.53 0:DiseaseFree 2.53 -TCGA-BH-A0DQ 0:LIVING 3.22 0:DiseaseFree 3.22 -TCGA-BH-A0HK 0:LIVING 5.85 0:DiseaseFree 5.85 -TCGA-A7-A0CG 0:LIVING 5.45 0:DiseaseFree 5.45 -TCGA-A7-A0CH 0:LIVING 5.29 0:DiseaseFree 5.29 -TCGA-A7-A0DB 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-A7-A0D9 0:LIVING 5.22 0:DiseaseFree 5.22 -TCGA-AO-A0J8 0:LIVING 9.1 0:DiseaseFree 9.1 -TCGA-BH-A0GZ 0:LIVING 10.78 0:DiseaseFree 10.78 -TCGA-AO-A0JA 0:LIVING 11.37 1:Recurred/Progressed NA -TCGA-AO-A0JF 0:LIVING 11.63 0:DiseaseFree 11.63 -TCGA-A7-A0CD 0:LIVING 5.59 0:DiseaseFree 5.59 -TCGA-D8-A145 0:LIVING 1.61 0:DiseaseFree 1.61 -TCGA-BH-A0HP 0:LIVING 13.6 0:DiseaseFree 13.6 -TCGA-BH-A0DK 0:LIVING 13.9 0:DiseaseFree 13.9 -TCGA-BH-A0E2 0:LIVING 12.35 0:DiseaseFree 12.35 -TCGA-A2-A0YI 0:LIVING 11.76 0:DiseaseFree 11.76 -TCGA-A2-A0YL 0:LIVING 8.8 0:DiseaseFree 8.8 -TCGA-AO-A0JG 0:LIVING 14.75 0:DiseaseFree 14.75 -TCGA-A2-A0YF 0:LIVING 9.49 0:DiseaseFree 9.49 -TCGA-BH-A0DP 0:LIVING 15.64 0:DiseaseFree 15.64 -TCGA-BH-A0E1 0:LIVING 15.67 0:DiseaseFree 15.67 -TCGA-A2-A0T5 0:LIVING 10.55 0:DiseaseFree 10.55 -TCGA-A2-A0T6 0:LIVING 11.3 0:DiseaseFree 11.3 -TCGA-BH-A0HI 0:LIVING 20.34 0:DiseaseFree 20.34 -TCGA-A2-A0T7 0:LIVING 13.04 0:DiseaseFree 13.04 -TCGA-BH-A0BJ 0:LIVING 21.68 0:DiseaseFree 21.68 -TCGA-BH-A0H7 0:LIVING 23.03 0:DiseaseFree 23.03 -TCGA-BH-A0HF 0:LIVING 23.88 0:DiseaseFree 23.88 -TCGA-BH-A0EB 0:LIVING 24.48 0:DiseaseFree 24.48 -TCGA-BH-A0H6 0:LIVING 24.54 0:DiseaseFree 24.54 -TCGA-A2-A0YD 0:LIVING 18.07 0:DiseaseFree 18.07 -TCGA-BH-A0HB 0:LIVING 26.48 0:DiseaseFree 26.48 -TCGA-BH-A0HX 0:LIVING 27.24 0:DiseaseFree 27.24 -TCGA-AO-A12H 0:LIVING 28.32 0:DiseaseFree 28.32 -TCGA-E2-A10E 0:LIVING 13.73 0:DiseaseFree 13.73 -TCGA-A2-A0D3 0:LIVING 24.18 0:DiseaseFree 24.18 -TCGA-E2-A10F 0:LIVING 11.83 0:DiseaseFree 11.83 -TCGA-AO-A03V 0:LIVING 29.11 0:DiseaseFree 29.11 -TCGA-A2-A0EW 0:LIVING 25.3 0:DiseaseFree 25.3 -TCGA-BH-A0GY 0:LIVING 30.13 0:DiseaseFree 30.13 -TCGA-A2-A0EV 0:LIVING 17.91 0:DiseaseFree 17.91 -TCGA-BH-A0BC 0:LIVING 32 0:DiseaseFree 32 -TCGA-A2-A0YC 0:LIVING 21.12 0:DiseaseFree 21.12 -TCGA-A2-A0EU 0:LIVING 24.08 0:DiseaseFree 24.08 -TCGA-A2-A0ET 0:LIVING 26.51 0:DiseaseFree 26.51 -TCGA-A2-A04Y 0:LIVING 25.07 0:DiseaseFree 25.07 -TCGA-BH-A0HQ 0:LIVING 36.83 0:DiseaseFree 36.83 -TCGA-A2-A0ES 0:LIVING 32.89 0:DiseaseFree 32.89 -TCGA-BH-A0BA 0:LIVING 37.19 0:DiseaseFree 37.19 -TCGA-E2-A10B 0:LIVING 24.57 0:DiseaseFree 24.57 -TCGA-BH-A0B1 0:LIVING 37.72 0:DiseaseFree 37.72 -TCGA-BH-A0DH 0:LIVING 37.98 0:DiseaseFree 37.98 -TCGA-BH-A0B4 0:LIVING 39.13 0:DiseaseFree 39.13 -TCGA-BH-A0H9 0:LIVING 40.97 0:DiseaseFree 40.97 -TCGA-AO-A0J9 0:LIVING 41.23 1:Recurred/Progressed NA -TCGA-AO-A12G 0:LIVING 41.56 0:DiseaseFree 41.56 -TCGA-A2-A0SY 0:LIVING 37.91 0:DiseaseFree 37.91 -TCGA-BH-A0E7 0:LIVING 44.75 0:DiseaseFree 44.75 -TCGA-AO-A03M 0:LIVING 47.8 0:DiseaseFree 47.8 -TCGA-BH-A0BV 0:LIVING 49.9 0:DiseaseFree 49.9 -TCGA-BH-A0B8 0:LIVING 51.55 0:DiseaseFree 51.55 -TCGA-A2-A0CZ 0:LIVING 43.96 0:DiseaseFree 43.96 -TCGA-A2-A0SU 0:LIVING 44.38 0:DiseaseFree 44.38 -TCGA-AO-A12E 0:LIVING 57.23 0:DiseaseFree 57.23 -TCGA-E2-A106 0:LIVING 51.09 0:DiseaseFree 51.09 -TCGA-A2-A0CV 0:LIVING 61.44 0:DiseaseFree 61.44 -TCGA-AO-A12C 0:LIVING 65.48 0:DiseaseFree 65.48 -TCGA-B6-A0RG 0:LIVING 68.4 0:DiseaseFree 68.4 -TCGA-A2-A0CS 0:LIVING 75.5 0:DiseaseFree 75.5 -TCGA-A2-A0EO 0:LIVING 71.65 0:DiseaseFree 71.65 -TCGA-A2-A0CQ 0:LIVING 78.59 0:DiseaseFree 78.59 -TCGA-A2-A0EN 0:LIVING 82.63 0:DiseaseFree 82.63 -TCGA-AO-A12A 0:LIVING 90.48 0:DiseaseFree 90.48 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109.4 -TCGA-D8-A1XO 0:LIVING 7.95 0:DiseaseFree 7.95 -TCGA-D8-A1XT 0:LIVING 6.34 0:DiseaseFree 6.34 -TCGA-A1-A0SP 0:LIVING 19.15 0:DiseaseFree 19.15 -TCGA-D8-A1J8 0:LIVING 8.41 0:DiseaseFree 8.41 -TCGA-D8-A1JF 0:LIVING 3.15 0:DiseaseFree 3.15 -TCGA-D8-A1JG 0:LIVING 6.14 0:DiseaseFree 6.14 -TCGA-D8-A1XS 0:LIVING 0.59 0:DiseaseFree 0.59 -TCGA-A1-A0SB 0:LIVING 8.51 0:DiseaseFree 8.51 -TCGA-A1-A0SF 0:LIVING 48.06 0:DiseaseFree 48.06 -TCGA-A1-A0SG 0:LIVING 14.23 0:DiseaseFree 14.23 -TCGA-A1-A0SI 0:LIVING 20.83 0:DiseaseFree 20.83 -TCGA-A1-A0SN 0:LIVING 39.29 0:DiseaseFree 39.29 -TCGA-A1-A0SQ 0:LIVING 18.17 0:DiseaseFree 18.17 -TCGA-A2-A1FV 0:LIVING 15.11 0:DiseaseFree 15.11 -TCGA-A2-A1FW 0:LIVING 7.26 0:DiseaseFree 7.26 -TCGA-A2-A1FX 0:LIVING 30.72 0:DiseaseFree 30.72 -TCGA-A2-A1FZ 0:LIVING 13.44 0:DiseaseFree 13.44 -TCGA-A2-A1G0 0:LIVING 12.48 0:DiseaseFree 12.48 -TCGA-A2-A1G1 0:LIVING 12.19 0:DiseaseFree 12.19 -TCGA-A2-A1G4 0:LIVING 12.22 0:DiseaseFree 12.22 -TCGA-A2-A1G6 0:LIVING 4.34 0:DiseaseFree 4.34 -TCGA-A2-A259 0:LIVING 42.22 0:DiseaseFree 42.22 -TCGA-A2-A25A 0:LIVING 97.51 0:DiseaseFree 97.51 -TCGA-A2-A25B 0:LIVING 8.48 0:DiseaseFree 8.48 -TCGA-A2-A25C 0:LIVING 9.36 0:DiseaseFree 9.36 -TCGA-A2-A25D 0:LIVING 7.98 0:DiseaseFree 7.98 -TCGA-A2-A25E 0:LIVING 82.49 0:DiseaseFree 82.49 -TCGA-A2-A25F 0:LIVING 3.71 0:DiseaseFree 3.71 -TCGA-A7-A26F 0:LIVING 8.44 0:DiseaseFree 8.44 -TCGA-A7-A26G 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-A7-A26H 0:LIVING 2.1 0:DiseaseFree 2.1 -TCGA-A7-A26I 0:LIVING 4.01 0:DiseaseFree 4.01 -TCGA-A7-A26J 0:LIVING 2.2 1:Recurred/Progressed NA -TCGA-A8-A08S 0:LIVING 19.05 0:DiseaseFree 19.05 -TCGA-A8-A09E 0:LIVING 30.95 0:DiseaseFree 30.95 -TCGA-A8-A09K 0:LIVING 29.93 0:DiseaseFree 29.93 -TCGA-AC-A23C 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-AC-A23E 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-AC-A23H 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-AO-A1KR 0:LIVING 70.31 0:DiseaseFree 70.31 -TCGA-AQ-A1H2 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-AQ-A1H3 0:LIVING 4.53 0:DiseaseFree 4.53 -TCGA-AR-A24H 0:LIVING 109.5 0:DiseaseFree 109.5 -TCGA-AR-A24K 0:LIVING 50.86 0:DiseaseFree 50.86 -TCGA-AR-A24L 0:LIVING 72.97 0:DiseaseFree 72.97 -TCGA-AR-A24M 0:LIVING 65.38 0:DiseaseFree 65.38 -TCGA-AR-A24N 0:LIVING 68.14 0:DiseaseFree 68.14 -TCGA-AR-A24O 0:LIVING 65.61 0:DiseaseFree 65.61 -TCGA-AR-A24P 0:LIVING 0.85 0:DiseaseFree 0.85 -TCGA-AR-A24Q 0:LIVING 65.97 0:DiseaseFree 65.97 -TCGA-AR-A24R 0:LIVING 57.33 0:DiseaseFree 57.33 -TCGA-AR-A24S 0:LIVING 62.03 0:DiseaseFree 62.03 -TCGA-AR-A24T 0:LIVING 53.22 0:DiseaseFree 53.22 -TCGA-AR-A24U 0:LIVING 53.32 0:DiseaseFree 53.32 -TCGA-AR-A24V 0:LIVING 54.14 0:DiseaseFree 54.14 -TCGA-AR-A24X 0:LIVING 48.13 0:DiseaseFree 48.13 -TCGA-AR-A24Z 0:LIVING 51.71 0:DiseaseFree 51.71 -TCGA-AR-A250 0:LIVING 56.08 0:DiseaseFree 56.08 -TCGA-AR-A251 0:LIVING 45.11 0:DiseaseFree 45.11 -TCGA-AR-A252 0:LIVING 40.61 0:DiseaseFree 40.61 -TCGA-AR-A254 0:LIVING 39.82 0:DiseaseFree 39.82 -TCGA-AR-A255 0:LIVING 34.76 0:DiseaseFree 34.76 -TCGA-BH-A0B2 0:LIVING 40.8 0:DiseaseFree 40.8 -TCGA-BH-A0DV 0:LIVING 45.14 0:DiseaseFree 45.14 -TCGA-BH-A201 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-BH-A202 0:LIVING 0.72 0:DiseaseFree 0.72 -TCGA-BH-A28Q NA NA NA NA -TCGA-C8-A1HE 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A1HJ 0:LIVING 0.16 0:DiseaseFree 0.16 -TCGA-C8-A1HK 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A1HO 0:LIVING 0 0:DiseaseFree 0 -TCGA-C8-A26V 0:LIVING 0.3 0:DiseaseFree 0.3 -TCGA-C8-A26W 0:LIVING 0.23 0:DiseaseFree 0.23 -TCGA-C8-A26X 0:LIVING 0.36 0:DiseaseFree 0.36 -TCGA-C8-A26Y 0:LIVING 0.43 0:DiseaseFree 0.43 -TCGA-C8-A26Z 0:LIVING 0.13 0:DiseaseFree 0.13 -TCGA-C8-A273 0:LIVING 0.2 0:DiseaseFree 0.2 -TCGA-C8-A274 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A275 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A278 0:LIVING 0.03 0:DiseaseFree 0.03 -TCGA-C8-A27A 0:LIVING 12.19 0:DiseaseFree 12.19 -TCGA-C8-A27B 0:LIVING 0.99 0:DiseaseFree 0.99 -TCGA-D8-A146 0:LIVING 11.3 0:DiseaseFree 11.3 -TCGA-D8-A1J9 0:LIVING 8.15 0:DiseaseFree 8.15 -TCGA-D8-A1JA 0:LIVING 0.59 0:DiseaseFree 0.59 -TCGA-D8-A1JB 0:LIVING 0 0:DiseaseFree 0 -TCGA-D8-A1JC 0:LIVING 5.85 0:DiseaseFree 5.85 -TCGA-D8-A1JD 0:LIVING 8.97 0:DiseaseFree 8.97 -TCGA-D8-A1JE 0:LIVING 1.87 0:DiseaseFree 1.87 -TCGA-D8-A1JI 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-D8-A1JJ 0:LIVING 9 0:DiseaseFree 9 -TCGA-D8-A1JK 0:LIVING 3.58 0:DiseaseFree 3.58 -TCGA-D8-A1JL 0:LIVING 8.71 0:DiseaseFree 8.71 -TCGA-D8-A1JM 0:LIVING 7.82 0:DiseaseFree 7.82 -TCGA-D8-A1JN 0:LIVING 7.13 0:DiseaseFree 7.13 -TCGA-D8-A1JP 0:LIVING 5.49 0:DiseaseFree 5.49 -TCGA-D8-A1X5 0:LIVING 5.62 0:DiseaseFree 5.62 -TCGA-D8-A1X6 0:LIVING 7.75 0:DiseaseFree 7.75 -TCGA-D8-A1X7 0:LIVING 2.79 0:DiseaseFree 2.79 -TCGA-D8-A1X8 0:LIVING 8.94 0:DiseaseFree 8.94 -TCGA-D8-A1X9 0:LIVING 12.48 0:DiseaseFree 12.48 -TCGA-D8-A1XA 0:LIVING 9 0:DiseaseFree 9 -TCGA-D8-A1XB 0:LIVING 6.6 0:DiseaseFree 6.6 -TCGA-D8-A1XC 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-D8-A1XD 0:LIVING 5.09 0:DiseaseFree 5.09 -TCGA-D8-A1XF 0:LIVING 6.47 0:DiseaseFree 6.47 -TCGA-D8-A1XG 0:LIVING 6.44 0:DiseaseFree 6.44 -TCGA-D8-A1XJ 0:LIVING 11.56 0:DiseaseFree 11.56 -TCGA-D8-A1XK 0:LIVING 10.71 0:DiseaseFree 10.71 -TCGA-D8-A1XL 0:LIVING 10.48 0:DiseaseFree 10.48 -TCGA-D8-A1XM 0:LIVING 7.16 0:DiseaseFree 7.16 -TCGA-D8-A1XQ 0:LIVING 5.82 0:DiseaseFree 5.82 -TCGA-D8-A1XR 0:LIVING 5.52 0:DiseaseFree 5.52 -TCGA-D8-A1XU 0:LIVING 4.9 0:DiseaseFree 4.9 -TCGA-D8-A1XV 0:LIVING 4.8 0:DiseaseFree 4.8 -TCGA-D8-A1XW 0:LIVING 3.84 0:DiseaseFree 3.84 -TCGA-D8-A1XY 0:LIVING 2.66 0:DiseaseFree 2.66 -TCGA-D8-A1XZ 0:LIVING 3.94 0:DiseaseFree 3.94 -TCGA-D8-A1Y0 0:LIVING 5.45 0:DiseaseFree 5.45 -TCGA-D8-A1Y1 0:LIVING 3.78 0:DiseaseFree 3.78 -TCGA-D8-A1Y2 0:LIVING 2.37 0:DiseaseFree 2.37 -TCGA-D8-A1Y3 0:LIVING 4.07 0:DiseaseFree 4.07 -TCGA-D8-A27E 0:LIVING 5.98 0:DiseaseFree 5.98 -TCGA-D8-A27F 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-D8-A27G 0:LIVING 6.87 0:DiseaseFree 6.87 -TCGA-D8-A27H 0:LIVING 4.6 0:DiseaseFree 4.6 -TCGA-D8-A27I 0:LIVING 6.08 0:DiseaseFree 6.08 -TCGA-D8-A27K 0:LIVING 3.88 0:DiseaseFree 3.88 -TCGA-D8-A27L 0:LIVING 4.11 0:DiseaseFree 4.11 -TCGA-D8-A27M 0:LIVING 4.73 0:DiseaseFree 4.73 -TCGA-D8-A27N 0:LIVING 4.76 0:DiseaseFree 4.76 -TCGA-D8-A27P 0:LIVING 0.72 0:DiseaseFree 0.72 -TCGA-D8-A27R 0:LIVING 2.96 0:DiseaseFree 2.96 -TCGA-D8-A27T 0:LIVING 4.44 0:DiseaseFree 4.44 -TCGA-D8-A27V 0:LIVING 2.4 0:DiseaseFree 2.4 -TCGA-D8-A27W 0:LIVING 0.49 0:DiseaseFree 0.49 -TCGA-E2-A1IE 0:LIVING 32.29 0:DiseaseFree 32.29 -TCGA-E2-A1IF 0:LIVING 31.41 0:DiseaseFree 31.41 -TCGA-E2-A1IG 0:LIVING 24.8 0:DiseaseFree 24.8 -TCGA-E2-A1IH 0:LIVING 21.62 0:DiseaseFree 21.62 -TCGA-E2-A1II 0:LIVING 27.93 0:DiseaseFree 27.93 -TCGA-E2-A1IJ 0:LIVING 23.82 0:DiseaseFree 23.82 -TCGA-E2-A1IK 0:LIVING 17.02 0:DiseaseFree 17.02 -TCGA-E2-A1IL 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E2-A1IN 0:LIVING 12.88 0:DiseaseFree 12.88 -TCGA-E2-A1IO 0:LIVING 14.72 0:DiseaseFree 14.72 -TCGA-E2-A1IP 0:LIVING 14.03 0:DiseaseFree 14.03 -TCGA-E2-A1IU 0:LIVING 4.17 0:DiseaseFree 4.17 -TCGA-E2-A1L6 0:LIVING 43.1 0:DiseaseFree 43.1 -TCGA-E2-A1L7 0:LIVING 20.8 0:DiseaseFree 20.8 -TCGA-E2-A1L8 0:LIVING 33.35 0:DiseaseFree 33.35 -TCGA-E2-A1L9 0:LIVING 12.75 0:DiseaseFree 12.75 -TCGA-E2-A1LA 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-E2-A1LB 0:LIVING 31.93 0:DiseaseFree 31.93 -TCGA-E2-A1LG 0:LIVING 11.5 0:DiseaseFree 11.5 -TCGA-E2-A1LH 0:LIVING 94.45 0:DiseaseFree 94.45 -TCGA-E2-A1LI 0:LIVING 90.35 0:DiseaseFree 90.35 -TCGA-E2-A1LL 0:LIVING 33.31 0:DiseaseFree 33.31 -TCGA-E2-A1LS 0:LIVING 7.85 0:DiseaseFree 7.85 -TCGA-E9-A1N3 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N4 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N5 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N6 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N8 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1N9 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NA 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NC 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1ND 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NE 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NF 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NG 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NH 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1NI 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1QZ 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R0 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A1R2 0:LIVING 0.62 0:DiseaseFree 0.62 -TCGA-E9-A1R3 0:LIVING 2.1 0:DiseaseFree 2.1 -TCGA-E9-A1R4 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1R5 0:LIVING 1.38 0:DiseaseFree 1.38 -TCGA-E9-A1R6 0:LIVING 2.76 0:DiseaseFree 2.76 -TCGA-E9-A1R7 0:LIVING 1.12 0:DiseaseFree 1.12 -TCGA-E9-A1RA 0:LIVING 0.95 0:DiseaseFree 0.95 -TCGA-E9-A1RB 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A1RC 0:LIVING 40.34 0:DiseaseFree 40.34 -TCGA-E9-A1RD 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A1RE 0:LIVING 1.54 0:DiseaseFree 1.54 -TCGA-E9-A1RF 0:LIVING 1.25 0:DiseaseFree 1.25 -TCGA-E9-A1RG 0:LIVING 1.15 0:DiseaseFree 1.15 -TCGA-E9-A1RH 0:LIVING 0.46 0:DiseaseFree 0.46 -TCGA-E9-A1RI 0:LIVING 1.58 0:DiseaseFree 1.58 -TCGA-E9-A226 0:LIVING 0.53 0:DiseaseFree 0.53 -TCGA-E9-A227 0:LIVING 0.79 0:DiseaseFree 0.79 -TCGA-E9-A228 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A229 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22A 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22B 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22D 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22E 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22G 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A22H 0:LIVING 0 0:DiseaseFree 0 -TCGA-E9-A243 0:LIVING 1.41 0:DiseaseFree 1.41 -TCGA-E9-A244 0:LIVING 0.66 0:DiseaseFree 0.66 -TCGA-E9-A245 0:LIVING 0.82 0:DiseaseFree 0.82 -TCGA-E9-A247 0:LIVING 0.39 0:DiseaseFree 0.39 -TCGA-E9-A248 0:LIVING 0.69 0:DiseaseFree 0.69 -TCGA-E9-A249 0:LIVING 0.92 0:DiseaseFree 0.92 -TCGA-E9-A24A 0:LIVING 0.33 0:DiseaseFree 0.33 -TCGA-EW-A1IW 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1IX 0:LIVING 35.55 0:DiseaseFree 35.55 -TCGA-EW-A1IY 0:LIVING 8.48 0:DiseaseFree 8.48 -TCGA-EW-A1IZ 0:LIVING 8.54 0:DiseaseFree 8.54 -TCGA-EW-A1J1 0:LIVING 9.26 0:DiseaseFree 9.26 -TCGA-EW-A1J2 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1J3 0:LIVING 8.28 0:DiseaseFree 8.28 -TCGA-EW-A1J5 0:LIVING 7.46 0:DiseaseFree 7.46 -TCGA-EW-A1J6 0:LIVING 19.55 0:DiseaseFree 19.55 -TCGA-EW-A1OV 0:LIVING 17.15 0:DiseaseFree 17.15 -TCGA-EW-A1OW 0:LIVING 15.21 0:DiseaseFree 15.21 -TCGA-EW-A1OX 0:LIVING 18.46 0:DiseaseFree 18.46 -TCGA-EW-A1OY 0:LIVING 19.48 0:DiseaseFree 19.48 -TCGA-EW-A1OZ 0:LIVING 30.91 0:DiseaseFree 30.91 -TCGA-EW-A1P0 0:LIVING 36.83 1:Recurred/Progressed NA -TCGA-EW-A1P1 0:LIVING 30.19 1:Recurred/Progressed NA -TCGA-EW-A1P3 0:LIVING 32.43 0:DiseaseFree 32.43 -TCGA-EW-A1P4 0:LIVING 16.46 0:DiseaseFree 16.46 -TCGA-EW-A1P5 0:LIVING 11.99 0:DiseaseFree 11.99 -TCGA-EW-A1P6 0:LIVING 10.25 0:DiseaseFree 10.25 -TCGA-EW-A1P7 0:LIVING 20.86 0:DiseaseFree 20.86 -TCGA-EW-A1PA 0:LIVING 8.77 0:DiseaseFree 8.77 -TCGA-EW-A1PB 0:LIVING 19.97 0:DiseaseFree 19.97 -TCGA-EW-A1PD 0:LIVING 5.72 0:DiseaseFree 5.72 -TCGA-EW-A1PE 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PF 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A1PG 0:LIVING 28.75 0:DiseaseFree 28.75 -TCGA-EW-A1PH 0:LIVING 4.57 0:DiseaseFree 4.57 -TCGA-EW-A2FS NA NA NA NA -TCGA-EW-A2FV NA NA NA NA -TCGA-EW-A2FW NA NA NA NA -TCGA-GM-A2DA 0:LIVING 194.13 1:Recurred/Progressed NA -TCGA-GM-A2DB 0:LIVING 53.06 0:DiseaseFree 53.06 -TCGA-GM-A2DC 0:LIVING 53.49 0:DiseaseFree 53.49 -TCGA-GM-A2DD 0:LIVING 43.01 0:DiseaseFree 43.01 -TCGA-GM-A2DF 0:LIVING 42.68 0:DiseaseFree 42.68 -TCGA-GM-A2DH 0:LIVING 42.25 0:DiseaseFree 42.25 -TCGA-GM-A2DI 0:LIVING 61.86 0:DiseaseFree 61.86 -TCGA-GM-A2DK 0:LIVING 62.29 0:DiseaseFree 62.29 -TCGA-GM-A2DL 0:LIVING 90.74 0:DiseaseFree 90.74 -TCGA-GM-A2DM 0:LIVING 76.58 0:DiseaseFree 76.58 -TCGA-GM-A2DN 0:LIVING 77.27 0:DiseaseFree 77.27 -TCGA-GM-A2DO 0:LIVING 53.29 0:DiseaseFree 53.29 -TCGA-AR-A24W NA NA NA NA -TCGA-AC-A2B8 NA NA NA NA -TCGA-AC-A2FF NA NA NA NA -TCGA-AC-A2FB NA NA NA NA -TCGA-AC-A2FG NA NA NA NA -TCGA-GI-A2C8 NA NA NA NA -TCGA-E9-A295 NA NA NA NA diff --git a/core/src/test/scripts/test_data/study_wr_clin/data_samples.txt b/core/src/test/scripts/test_data/study_wr_clin/data_samples.txt deleted file mode 100644 index 17140a1b567..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/data_samples.txt +++ /dev/null @@ -1,833 +0,0 @@ -## -## -#Patient Identifier Sample Identifier Subtype -#Patient identifier Sample identifier Subtype description -#STRING STRING STRING -#1 1 1 -PATIENT_ID SAMPLE_ID SUBTYPE -TCGA-A2-A04P TCGA-A2-A04P-01 basal-like -TCGA-A1-A0SK TCGA-A1-A0SK-01 basal-like -TCGA-A2-A0CM TCGA-A2-A0CM-01 basal-like -TCGA-AR-A1AR TCGA-AR-A1AR-01 basal-like -TCGA-B6-A0WX TCGA-B6-A0WX-01 basal-like -TCGA-BH-A1F0 TCGA-BH-A1F0-01 basal-like -TCGA-B6-A0I6 TCGA-B6-A0I6-01 NA -TCGA-BH-A18V TCGA-BH-A18V-01 basal-like -TCGA-BH-A18Q TCGA-BH-A18Q-01 basal-like -TCGA-BH-A18K TCGA-BH-A18K-01 basal-like -TCGA-BH-A0HL TCGA-BH-A0HL-01 NA -TCGA-BH-A0E0 TCGA-BH-A0E0-01 basal-like -TCGA-BH-A0RX TCGA-BH-A0RX-01 basal-like -TCGA-A7-A13D TCGA-A7-A13D-01 basal-like -TCGA-BH-A0E6 TCGA-BH-A0E6-01 basal-like -TCGA-AO-A0J4 TCGA-AO-A0J4-01 basal-like -TCGA-A7-A0CE TCGA-A7-A0CE-01 basal-like -TCGA-A7-A13E TCGA-A7-A13E-01 NA -TCGA-A7-A0DA TCGA-A7-A0DA-01 basal-like -TCGA-D8-A142 TCGA-D8-A142-01 basal-like -TCGA-D8-A143 TCGA-D8-A143-01 NA -TCGA-AQ-A04J TCGA-AQ-A04J-01 basal-like -TCGA-BH-A0HN TCGA-BH-A0HN-01 NA -TCGA-A2-A0T0 TCGA-A2-A0T0-01 basal-like -TCGA-A2-A0YE TCGA-A2-A0YE-01 NA -TCGA-A2-A0YJ TCGA-A2-A0YJ-01 NA -TCGA-A2-A0D0 TCGA-A2-A0D0-01 basal-like -TCGA-A2-A04U TCGA-A2-A04U-01 NA -TCGA-AO-A0J6 TCGA-AO-A0J6-01 basal-like -TCGA-A2-A0YM TCGA-A2-A0YM-01 basal-like -TCGA-A2-A0D2 TCGA-A2-A0D2-01 basal-like -TCGA-BH-A0B3 TCGA-BH-A0B3-01 basal-like -TCGA-A2-A04Q TCGA-A2-A04Q-01 basal-like -TCGA-A2-A0SX TCGA-A2-A0SX-01 basal-like -TCGA-AO-A0JL TCGA-AO-A0JL-01 basal-like -TCGA-AO-A12F TCGA-AO-A12F-01 basal-like -TCGA-BH-A0B9 TCGA-BH-A0B9-01 basal-like -TCGA-A2-A04T TCGA-A2-A04T-01 NA -TCGA-B6-A0RT TCGA-B6-A0RT-01 basal-like -TCGA-AO-A128 TCGA-AO-A128-01 NA -TCGA-AO-A129 TCGA-AO-A129-01 basal-like -TCGA-AO-A124 TCGA-AO-A124-01 basal-like -TCGA-B6-A0RU TCGA-B6-A0RU-01 basal-like -TCGA-B6-A0IQ TCGA-B6-A0IQ-01 basal-like -TCGA-B6-A0I2 TCGA-B6-A0I2-01 basal-like -TCGA-B6-A0IJ TCGA-B6-A0IJ-01 basal-like -TCGA-B6-A0X1 TCGA-B6-A0X1-01 NA -TCGA-B6-A0RE TCGA-B6-A0RE-01 basal-like -TCGA-A2-A0ST TCGA-A2-A0ST-01 basal-like -TCGA-AR-A0TP TCGA-AR-A0TP-01 basal-like -TCGA-A1-A0SO TCGA-A1-A0SO-01 basal-like -TCGA-A8-A07C TCGA-A8-A07C-01 basal-like -TCGA-A8-A07O TCGA-A8-A07O-01 basal-like -TCGA-A8-A07R TCGA-A8-A07R-01 basal-like -TCGA-A8-A07U TCGA-A8-A07U-01 basal-like -TCGA-A8-A08H TCGA-A8-A08H-01 basal-like -TCGA-A8-A08R TCGA-A8-A08R-01 basal-like -TCGA-AN-A04D TCGA-AN-A04D-01 basal-like -TCGA-AN-A0AL TCGA-AN-A0AL-01 basal-like -TCGA-AN-A0AR TCGA-AN-A0AR-01 basal-like -TCGA-AN-A0AT TCGA-AN-A0AT-01 NA -TCGA-AN-A0FJ TCGA-AN-A0FJ-01 basal-like -TCGA-AN-A0FL TCGA-AN-A0FL-01 basal-like -TCGA-AN-A0FX TCGA-AN-A0FX-01 basal-like -TCGA-AN-A0G0 TCGA-AN-A0G0-01 NA -TCGA-AN-A0XU TCGA-AN-A0XU-01 basal-like -TCGA-AR-A0TS TCGA-AR-A0TS-01 basal-like -TCGA-AR-A0TU TCGA-AR-A0TU-01 NA -TCGA-AR-A0U0 TCGA-AR-A0U0-01 NA -TCGA-AR-A0U1 TCGA-AR-A0U1-01 basal-like -TCGA-AR-A0U4 TCGA-AR-A0U4-01 basal-like -TCGA-AR-A1AH TCGA-AR-A1AH-01 basal-like -TCGA-AR-A1AI TCGA-AR-A1AI-01 basal-like -TCGA-AR-A1AJ TCGA-AR-A1AJ-01 basal-like -TCGA-AR-A1AQ TCGA-AR-A1AQ-01 basal-like -TCGA-AR-A1AY TCGA-AR-A1AY-01 basal-like -TCGA-BH-A0AV TCGA-BH-A0AV-01 basal-like -TCGA-BH-A0BG TCGA-BH-A0BG-01 basal-like -TCGA-BH-A0BL TCGA-BH-A0BL-01 basal-like -TCGA-BH-A0BW TCGA-BH-A0BW-01 basal-like -TCGA-BH-A0DL TCGA-BH-A0DL-01 basal-like -TCGA-BH-A0WA TCGA-BH-A0WA-01 basal-like -TCGA-BH-A18G TCGA-BH-A18G-01 NA -TCGA-C8-A12K TCGA-C8-A12K-01 basal-like -TCGA-C8-A12V TCGA-C8-A12V-01 basal-like -TCGA-C8-A131 TCGA-C8-A131-01 basal-like -TCGA-C8-A134 TCGA-C8-A134-01 basal-like -TCGA-D8-A147 TCGA-D8-A147-01 basal-like -TCGA-E2-A14N TCGA-E2-A14N-01 basal-like -TCGA-E2-A14R TCGA-E2-A14R-01 basal-like -TCGA-E2-A14X TCGA-E2-A14X-01 basal-like -TCGA-E2-A14Y TCGA-E2-A14Y-01 basal-like -TCGA-E2-A150 TCGA-E2-A150-01 basal-like -TCGA-E2-A158 TCGA-E2-A158-01 basal-like -TCGA-E2-A159 TCGA-E2-A159-01 basal-like -TCGA-E2-A1AZ TCGA-E2-A1AZ-01 NA -TCGA-E2-A1B5 TCGA-E2-A1B5-01 basal-like -TCGA-A8-A08L TCGA-A8-A08L-01 Her2 enriched -TCGA-BH-A1EV TCGA-BH-A1EV-01 Her2 enriched -TCGA-B6-A0I9 TCGA-B6-A0I9-01 Her2 enriched -TCGA-A8-A09X TCGA-A8-A09X-01 Her2 enriched -TCGA-B6-A0IK TCGA-B6-A0IK-01 Her2 enriched -TCGA-BH-A18P TCGA-BH-A18P-01 Her2 enriched -TCGA-A8-A08J TCGA-A8-A08J-01 Her2 enriched -TCGA-BH-A18R TCGA-BH-A18R-01 Her2 enriched -TCGA-AR-A1AT TCGA-AR-A1AT-01 Her2 enriched -TCGA-B6-A0RS TCGA-B6-A0RS-01 Her2 enriched -TCGA-BH-A0DZ TCGA-BH-A0DZ-01 Her2 enriched -TCGA-A2-A0T1 TCGA-A2-A0T1-01 Her2 enriched -TCGA-AO-A0J2 TCGA-AO-A0J2-01 Her2 enriched -TCGA-BH-A0AW TCGA-BH-A0AW-01 Her2 enriched -TCGA-BH-A0EE TCGA-BH-A0EE-01 Her2 enriched -TCGA-A2-A0D1 TCGA-A2-A0D1-01 Her2 enriched -TCGA-AO-A03N TCGA-AO-A03N-01 Her2 enriched -TCGA-A2-A0CY TCGA-A2-A0CY-01 Her2 enriched -TCGA-A2-A04X TCGA-A2-A04X-01 Her2 enriched -TCGA-A2-A0CX TCGA-A2-A0CX-01 Her2 enriched -TCGA-A2-A04W TCGA-A2-A04W-01 Her2 enriched -TCGA-AO-A12D TCGA-AO-A12D-01 Her2 enriched -TCGA-A2-A0CL TCGA-A2-A0CL-01 Her2 enriched -TCGA-AO-A0JE TCGA-AO-A0JE-01 Her2 enriched -TCGA-A2-A0EQ TCGA-A2-A0EQ-01 Her2 enriched -TCGA-AO-A03L TCGA-AO-A03L-01 Her2 enriched -TCGA-B6-A0RH TCGA-B6-A0RH-01 Her2 enriched -TCGA-A8-A075 TCGA-A8-A075-01 Her2 enriched -TCGA-A8-A076 TCGA-A8-A076-01 Her2 enriched -TCGA-A8-A07B TCGA-A8-A07B-01 Her2 enriched -TCGA-A8-A07I TCGA-A8-A07I-01 Her2 enriched -TCGA-A8-A081 TCGA-A8-A081-01 Her2 enriched -TCGA-A8-A08B TCGA-A8-A08B-01 Her2 enriched -TCGA-A8-A08X TCGA-A8-A08X-01 Her2 enriched -TCGA-A8-A092 TCGA-A8-A092-01 Her2 enriched -TCGA-A8-A094 TCGA-A8-A094-01 Her2 enriched -TCGA-A8-A09G TCGA-A8-A09G-01 Her2 enriched -TCGA-A8-A0A7 TCGA-A8-A0A7-01 Her2 enriched -TCGA-AN-A04C TCGA-AN-A04C-01 Her2 enriched -TCGA-AN-A0FV TCGA-AN-A0FV-01 Her2 enriched -TCGA-AR-A0TX TCGA-AR-A0TX-01 Her2 enriched -TCGA-BH-A0B7 TCGA-BH-A0B7-01 Her2 enriched -TCGA-BH-A0HY TCGA-BH-A0HY-01 Her2 enriched -TCGA-C8-A12L TCGA-C8-A12L-01 Her2 enriched -TCGA-C8-A12P TCGA-C8-A12P-01 Her2 enriched -TCGA-C8-A12Q TCGA-C8-A12Q-01 Her2 enriched -TCGA-C8-A12T TCGA-C8-A12T-01 Her2 enriched -TCGA-C8-A12Z TCGA-C8-A12Z-01 Her2 enriched -TCGA-C8-A130 TCGA-C8-A130-01 Her2 enriched -TCGA-C8-A135 TCGA-C8-A135-01 Her2 enriched -TCGA-C8-A137 TCGA-C8-A137-01 Her2 enriched -TCGA-C8-A138 TCGA-C8-A138-01 Her2 enriched -TCGA-C8-A1HF TCGA-C8-A1HF-01 Her2 enriched -TCGA-D8-A13Z TCGA-D8-A13Z-01 Her2 enriched -TCGA-E2-A14P TCGA-E2-A14P-01 Her2 enriched -TCGA-E2-A14V TCGA-E2-A14V-01 Her2 enriched -TCGA-E2-A152 TCGA-E2-A152-01 Her2 enriched -TCGA-E2-A1B0 TCGA-E2-A1B0-01 Her2 enriched -TCGA-A2-A0CU TCGA-A2-A0CU-01 Luminal A -TCGA-AR-A0TR TCGA-AR-A0TR-01 Luminal A -TCGA-BH-A18T TCGA-BH-A18T-01 Luminal A -TCGA-B6-A0I8 TCGA-B6-A0I8-01 Luminal A -TCGA-B6-A0X4 TCGA-B6-A0X4-01 Luminal A -TCGA-A8-A06U TCGA-A8-A06U-01 Luminal A -TCGA-BH-A0EA TCGA-BH-A0EA-01 Luminal A -TCGA-BH-A18N TCGA-BH-A18N-01 Luminal A -TCGA-BH-A1EU TCGA-BH-A1EU-01 Luminal A -TCGA-B6-A0X7 TCGA-B6-A0X7-01 Luminal A -TCGA-A2-A04V TCGA-A2-A04V-01 Luminal A -TCGA-BH-A18S TCGA-BH-A18S-01 Luminal A -TCGA-BH-A18M TCGA-BH-A18M-01 Luminal A -TCGA-B6-A0RM TCGA-B6-A0RM-01 Luminal A -TCGA-BH-A1ET TCGA-BH-A1ET-01 Luminal A -TCGA-B6-A0IN TCGA-B6-A0IN-01 Luminal A -TCGA-BH-A1EO TCGA-BH-A1EO-01 Luminal A -TCGA-B6-A0WS TCGA-B6-A0WS-01 Luminal A -TCGA-B6-A0RP TCGA-B6-A0RP-01 Luminal A -TCGA-B6-A0IH TCGA-B6-A0IH-01 Luminal A -TCGA-B6-A0WY TCGA-B6-A0WY-01 Luminal A -TCGA-BH-A1ES TCGA-BH-A1ES-01 Luminal A -TCGA-B6-A0X0 TCGA-B6-A0X0-01 Luminal A -TCGA-B6-A0RQ TCGA-B6-A0RQ-01 Luminal A -TCGA-B6-A0IG TCGA-B6-A0IG-01 Luminal A -TCGA-BH-A0HO TCGA-BH-A0HO-01 Luminal A -TCGA-BH-A0DS TCGA-BH-A0DS-01 Luminal A -TCGA-BH-A0DQ TCGA-BH-A0DQ-01 Luminal A -TCGA-BH-A0HK TCGA-BH-A0HK-01 Luminal A -TCGA-A7-A0CG TCGA-A7-A0CG-01 Luminal A -TCGA-A7-A0CH TCGA-A7-A0CH-01 Luminal A -TCGA-A7-A0DB TCGA-A7-A0DB-01 Luminal A -TCGA-A7-A0D9 TCGA-A7-A0D9-01 Luminal A -TCGA-AO-A0J8 TCGA-AO-A0J8-01 Luminal A -TCGA-BH-A0GZ TCGA-BH-A0GZ-01 Luminal A -TCGA-AO-A0JA TCGA-AO-A0JA-01 Luminal A -TCGA-AO-A0JF TCGA-AO-A0JF-01 Luminal A -TCGA-A7-A0CD TCGA-A7-A0CD-01 Luminal A -TCGA-D8-A145 TCGA-D8-A145-01 Luminal A -TCGA-BH-A0HP TCGA-BH-A0HP-01 Luminal A -TCGA-BH-A0DK TCGA-BH-A0DK-01 Luminal A -TCGA-BH-A0E2 TCGA-BH-A0E2-01 Luminal A -TCGA-A2-A0YI TCGA-A2-A0YI-01 Luminal A -TCGA-A2-A0YL TCGA-A2-A0YL-01 Luminal A -TCGA-AO-A0JG TCGA-AO-A0JG-01 Luminal A -TCGA-A2-A0YF TCGA-A2-A0YF-01 Luminal A -TCGA-BH-A0DP TCGA-BH-A0DP-01 Luminal A -TCGA-BH-A0E1 TCGA-BH-A0E1-01 Luminal A -TCGA-A2-A0T5 TCGA-A2-A0T5-01 Luminal A -TCGA-A2-A0T6 TCGA-A2-A0T6-01 Luminal A -TCGA-BH-A0HI TCGA-BH-A0HI-01 Luminal A -TCGA-A2-A0T7 TCGA-A2-A0T7-01 Luminal A -TCGA-BH-A0BJ TCGA-BH-A0BJ-01 Luminal A -TCGA-BH-A0H7 TCGA-BH-A0H7-01 Luminal A -TCGA-BH-A0HF TCGA-BH-A0HF-01 Luminal A -TCGA-BH-A0EB TCGA-BH-A0EB-01 Luminal A -TCGA-BH-A0H6 TCGA-BH-A0H6-01 Luminal A -TCGA-A2-A0YD TCGA-A2-A0YD-01 Luminal A -TCGA-BH-A0HB TCGA-BH-A0HB-01 Luminal A -TCGA-BH-A0HX TCGA-BH-A0HX-01 Luminal A -TCGA-AO-A12H TCGA-AO-A12H-01 Luminal A -TCGA-E2-A10E TCGA-E2-A10E-01 Luminal A -TCGA-A2-A0D3 TCGA-A2-A0D3-01 Luminal A -TCGA-E2-A10F TCGA-E2-A10F-01 Luminal A -TCGA-AO-A03V TCGA-AO-A03V-01 Luminal A -TCGA-A2-A0EW TCGA-A2-A0EW-01 Luminal A -TCGA-BH-A0GY TCGA-BH-A0GY-01 Luminal A -TCGA-A2-A0EV TCGA-A2-A0EV-01 Luminal A -TCGA-BH-A0BC TCGA-BH-A0BC-01 Luminal A -TCGA-A2-A0YC TCGA-A2-A0YC-01 Luminal A -TCGA-A2-A0EU TCGA-A2-A0EU-01 Luminal A -TCGA-A2-A0ET TCGA-A2-A0ET-01 Luminal A -TCGA-A2-A04Y TCGA-A2-A04Y-01 Luminal A -TCGA-BH-A0HQ TCGA-BH-A0HQ-01 Luminal A -TCGA-A2-A0ES TCGA-A2-A0ES-01 Luminal A -TCGA-BH-A0BA TCGA-BH-A0BA-01 Luminal A -TCGA-E2-A10B TCGA-E2-A10B-01 Luminal A -TCGA-BH-A0B1 TCGA-BH-A0B1-01 Luminal A -TCGA-BH-A0DH TCGA-BH-A0DH-01 Luminal A -TCGA-BH-A0B4 TCGA-BH-A0B4-01 Luminal A -TCGA-BH-A0H9 TCGA-BH-A0H9-01 Luminal A -TCGA-AO-A0J9 TCGA-AO-A0J9-01 Luminal A -TCGA-AO-A12G TCGA-AO-A12G-01 Luminal A -TCGA-A2-A0SY TCGA-A2-A0SY-01 Luminal A -TCGA-BH-A0E7 TCGA-BH-A0E7-01 Luminal A -TCGA-AO-A03M TCGA-AO-A03M-01 Luminal A -TCGA-BH-A0BV TCGA-BH-A0BV-01 Luminal A -TCGA-BH-A0B8 TCGA-BH-A0B8-01 Luminal A -TCGA-A2-A0CZ TCGA-A2-A0CZ-01 Luminal A -TCGA-A2-A0SU TCGA-A2-A0SU-01 Luminal A -TCGA-AO-A12E TCGA-AO-A12E-01 Luminal A -TCGA-E2-A106 TCGA-E2-A106-01 Luminal A -TCGA-A2-A0CV TCGA-A2-A0CV-01 Luminal A -TCGA-AO-A12C TCGA-AO-A12C-01 Luminal A -TCGA-B6-A0RG TCGA-B6-A0RG-01 Luminal A -TCGA-A2-A0CS TCGA-A2-A0CS-01 Luminal A -TCGA-A2-A0EO TCGA-A2-A0EO-01 Luminal A -TCGA-A2-A0CQ TCGA-A2-A0CQ-01 Luminal A -TCGA-A2-A0EN TCGA-A2-A0EN-01 Luminal A -TCGA-AO-A12A TCGA-AO-A12A-01 Luminal A -TCGA-A2-A0CP TCGA-A2-A0CP-01 Luminal A -TCGA-AO-A126 TCGA-AO-A126-01 Luminal A -TCGA-AO-A125 TCGA-AO-A125-01 Luminal A -TCGA-A2-A0EM TCGA-A2-A0EM-01 Luminal A -TCGA-A2-A04N TCGA-A2-A04N-01 Luminal A -TCGA-AQ-A04L TCGA-AQ-A04L-01 Luminal A -TCGA-B6-A0IO TCGA-B6-A0IO-01 Luminal A -TCGA-B6-A0IP TCGA-B6-A0IP-01 Luminal A -TCGA-B6-A0WZ TCGA-B6-A0WZ-01 Luminal A -TCGA-B6-A0I5 TCGA-B6-A0I5-01 Luminal A -TCGA-B6-A0RV TCGA-B6-A0RV-01 Luminal A -TCGA-B6-A0RO TCGA-B6-A0RO-01 Luminal A -TCGA-B6-A0RN TCGA-B6-A0RN-01 Luminal A -TCGA-B6-A0WT TCGA-B6-A0WT-01 Luminal A -TCGA-B6-A0IA TCGA-B6-A0IA-01 Luminal A -TCGA-B6-A0RI TCGA-B6-A0RI-01 Luminal A -TCGA-A1-A0SE TCGA-A1-A0SE-01 Luminal A -TCGA-A2-A0EX TCGA-A2-A0EX-01 Luminal A -TCGA-AO-A0JJ TCGA-AO-A0JJ-01 Luminal A -TCGA-E2-A105 TCGA-E2-A105-01 Luminal A -TCGA-A1-A0SD TCGA-A1-A0SD-01 Luminal A -TCGA-A1-A0SH TCGA-A1-A0SH-01 Luminal A -TCGA-A1-A0SJ TCGA-A1-A0SJ-01 Luminal A -TCGA-A8-A06P TCGA-A8-A06P-01 Luminal A -TCGA-A8-A06T TCGA-A8-A06T-01 Luminal A -TCGA-A8-A06Y TCGA-A8-A06Y-01 Luminal A -TCGA-A8-A07E TCGA-A8-A07E-01 Luminal A -TCGA-A8-A07F TCGA-A8-A07F-01 Luminal A -TCGA-A8-A07G TCGA-A8-A07G-01 Luminal A -TCGA-A8-A07J TCGA-A8-A07J-01 Luminal A -TCGA-A8-A07P TCGA-A8-A07P-01 Luminal A -TCGA-A8-A083 TCGA-A8-A083-01 Luminal A -TCGA-A8-A086 TCGA-A8-A086-01 Luminal A -TCGA-A8-A08A TCGA-A8-A08A-01 Luminal A -TCGA-A8-A08C TCGA-A8-A08C-01 Luminal A -TCGA-A8-A08O TCGA-A8-A08O-01 Luminal A -TCGA-A8-A08T TCGA-A8-A08T-01 Luminal A -TCGA-A8-A08Z TCGA-A8-A08Z-01 Luminal A -TCGA-A8-A090 TCGA-A8-A090-01 Luminal A -TCGA-A8-A091 TCGA-A8-A091-01 Luminal A -TCGA-A8-A093 TCGA-A8-A093-01 Luminal A -TCGA-A8-A099 TCGA-A8-A099-01 Luminal A -TCGA-A8-A09A TCGA-A8-A09A-01 Luminal A -TCGA-A8-A09B TCGA-A8-A09B-01 Luminal A -TCGA-A8-A09T TCGA-A8-A09T-01 Luminal A -TCGA-A8-A09V TCGA-A8-A09V-01 Luminal A -TCGA-A8-A0A1 TCGA-A8-A0A1-01 Luminal A -TCGA-A8-A0A2 TCGA-A8-A0A2-01 Luminal A -TCGA-A8-A0A4 TCGA-A8-A0A4-01 Luminal A -TCGA-A8-A0A6 TCGA-A8-A0A6-01 Luminal A -TCGA-A8-A0AD TCGA-A8-A0AD-01 Luminal A -TCGA-AN-A03X TCGA-AN-A03X-01 Luminal A -TCGA-AN-A046 TCGA-AN-A046-01 Luminal A -TCGA-AN-A04A TCGA-AN-A04A-01 Luminal A -TCGA-AN-A0FD TCGA-AN-A0FD-01 Luminal A -TCGA-AN-A0FN TCGA-AN-A0FN-01 Luminal A -TCGA-AN-A0FS TCGA-AN-A0FS-01 Luminal A -TCGA-AN-A0FT TCGA-AN-A0FT-01 Luminal A -TCGA-AN-A0FW TCGA-AN-A0FW-01 Luminal A -TCGA-AN-A0FZ TCGA-AN-A0FZ-01 Luminal A -TCGA-AN-A0XL TCGA-AN-A0XL-01 Luminal A -TCGA-AN-A0XN TCGA-AN-A0XN-01 Luminal A -TCGA-AN-A0XO TCGA-AN-A0XO-01 Luminal A -TCGA-AN-A0XP TCGA-AN-A0XP-01 Luminal A -TCGA-AN-A0XS TCGA-AN-A0XS-01 Luminal A -TCGA-AN-A0XT TCGA-AN-A0XT-01 Luminal A -TCGA-AN-A0XV TCGA-AN-A0XV-01 Luminal A -TCGA-AR-A0TW TCGA-AR-A0TW-01 Luminal A -TCGA-AR-A1AK TCGA-AR-A1AK-01 Luminal A -TCGA-AR-A1AL TCGA-AR-A1AL-01 Luminal A -TCGA-AR-A1AN TCGA-AR-A1AN-01 Luminal A -TCGA-AR-A1AP TCGA-AR-A1AP-01 Luminal A -TCGA-AR-A1AS TCGA-AR-A1AS-01 Luminal A -TCGA-AR-A1AU TCGA-AR-A1AU-01 Luminal A -TCGA-AR-A1AW TCGA-AR-A1AW-01 Luminal A -TCGA-AR-A1AX TCGA-AR-A1AX-01 Luminal A -TCGA-BH-A0AZ TCGA-BH-A0AZ-01 Luminal A -TCGA-BH-A0B0 TCGA-BH-A0B0-01 Luminal A -TCGA-BH-A0BM TCGA-BH-A0BM-01 Luminal A -TCGA-BH-A0BO TCGA-BH-A0BO-01 Luminal A -TCGA-BH-A0BP TCGA-BH-A0BP-01 Luminal A -TCGA-BH-A0BQ TCGA-BH-A0BQ-01 Luminal A -TCGA-BH-A0BR TCGA-BH-A0BR-01 Luminal A -TCGA-BH-A0BS TCGA-BH-A0BS-01 Luminal A -TCGA-BH-A0BT TCGA-BH-A0BT-01 Luminal A -TCGA-BH-A0C1 TCGA-BH-A0C1-01 Luminal A -TCGA-BH-A0DE TCGA-BH-A0DE-01 Luminal A -TCGA-BH-A0DG TCGA-BH-A0DG-01 Luminal A -TCGA-BH-A0DI TCGA-BH-A0DI-01 Luminal A -TCGA-BH-A0DO TCGA-BH-A0DO-01 Luminal A -TCGA-BH-A0DT TCGA-BH-A0DT-01 Luminal A -TCGA-BH-A0DX TCGA-BH-A0DX-01 Luminal A -TCGA-BH-A0E9 TCGA-BH-A0E9-01 Luminal A -TCGA-BH-A0EI TCGA-BH-A0EI-01 Luminal A -TCGA-BH-A0H3 TCGA-BH-A0H3-01 Luminal A -TCGA-BH-A0H5 TCGA-BH-A0H5-01 Luminal A -TCGA-BH-A0HA TCGA-BH-A0HA-01 Luminal A -TCGA-BH-A0W4 TCGA-BH-A0W4-01 Luminal A -TCGA-BH-A0W5 TCGA-BH-A0W5-01 Luminal A -TCGA-BH-A0W7 TCGA-BH-A0W7-01 Luminal A -TCGA-BH-A18H TCGA-BH-A18H-01 Luminal A -TCGA-BH-A18I TCGA-BH-A18I-01 Luminal A -TCGA-C8-A12N TCGA-C8-A12N-01 Luminal A -TCGA-C8-A12O TCGA-C8-A12O-01 Luminal A -TCGA-C8-A12Y TCGA-C8-A12Y-01 Luminal A -TCGA-C8-A132 TCGA-C8-A132-01 Luminal A -TCGA-C8-A133 TCGA-C8-A133-01 Luminal A -TCGA-C8-A1HI TCGA-C8-A1HI-01 Luminal A -TCGA-D8-A141 TCGA-D8-A141-01 Luminal A -TCGA-E2-A14Q TCGA-E2-A14Q-01 Luminal A -TCGA-E2-A14T TCGA-E2-A14T-01 Luminal A -TCGA-E2-A14Z TCGA-E2-A14Z-01 Luminal A -TCGA-E2-A153 TCGA-E2-A153-01 Luminal A -TCGA-E2-A154 TCGA-E2-A154-01 Luminal A -TCGA-E2-A156 TCGA-E2-A156-01 Luminal A -TCGA-E2-A15C TCGA-E2-A15C-01 Luminal A -TCGA-E2-A15D TCGA-E2-A15D-01 Luminal A -TCGA-E2-A15E TCGA-E2-A15E-01 Luminal A -TCGA-E2-A15F TCGA-E2-A15F-01 Luminal A -TCGA-E2-A15G TCGA-E2-A15G-01 Luminal A -TCGA-E2-A15H TCGA-E2-A15H-01 Luminal A -TCGA-E2-A15I TCGA-E2-A15I-01 Luminal A -TCGA-E2-A15J TCGA-E2-A15J-01 Luminal A -TCGA-E2-A15O TCGA-E2-A15O-01 Luminal A -TCGA-E2-A15P TCGA-E2-A15P-01 Luminal A -TCGA-E2-A15R TCGA-E2-A15R-01 Luminal A -TCGA-E2-A1B1 TCGA-E2-A1B1-01 Luminal A -TCGA-E2-A1B4 TCGA-E2-A1B4-01 Luminal A -TCGA-E2-A1B6 TCGA-E2-A1B6-01 Luminal A -TCGA-E2-A1BC TCGA-E2-A1BC-01 Luminal A -TCGA-E2-A1BD TCGA-E2-A1BD-01 Luminal A -TCGA-A2-A0SV TCGA-A2-A0SV-01 Luminal B -TCGA-AO-A03O TCGA-AO-A03O-01 Luminal B -TCGA-A2-A0SW TCGA-A2-A0SW-01 Luminal B -TCGA-B6-A0WW TCGA-B6-A0WW-01 Luminal B -TCGA-BH-A18J TCGA-BH-A18J-01 Luminal B -TCGA-BH-A18L TCGA-BH-A18L-01 Luminal B -TCGA-A8-A06X TCGA-A8-A06X-01 Luminal B -TCGA-B6-A0IC TCGA-B6-A0IC-01 Luminal B -TCGA-BH-A18U TCGA-BH-A18U-01 Luminal B -TCGA-BH-A1EW TCGA-BH-A1EW-01 Luminal B -TCGA-AR-A0TY TCGA-AR-A0TY-01 Luminal B -TCGA-B6-A0X5 TCGA-B6-A0X5-01 Luminal B -TCGA-B6-A0WV TCGA-B6-A0WV-01 Luminal B -TCGA-B6-A0RL TCGA-B6-A0RL-01 Luminal B -TCGA-AR-A0U2 TCGA-AR-A0U2-01 Luminal B -TCGA-B6-A0IB TCGA-B6-A0IB-01 Luminal B -TCGA-AO-A0J7 TCGA-AO-A0J7-01 Luminal B -TCGA-AO-A0J3 TCGA-AO-A0J3-01 Luminal B -TCGA-D8-A13Y TCGA-D8-A13Y-01 Luminal B -TCGA-A7-A13F TCGA-A7-A13F-01 Luminal B -TCGA-BH-A0HU TCGA-BH-A0HU-01 Luminal B -TCGA-D8-A140 TCGA-D8-A140-01 Luminal B -TCGA-A7-A0CJ TCGA-A7-A0CJ-01 Luminal B -TCGA-AQ-A04H TCGA-AQ-A04H-01 Luminal B -TCGA-BH-A0H0 TCGA-BH-A0H0-01 Luminal B -TCGA-BH-A0BD TCGA-BH-A0BD-01 Luminal B -TCGA-A2-A0T3 TCGA-A2-A0T3-01 Luminal B -TCGA-A2-A0T4 TCGA-A2-A0T4-01 Luminal B -TCGA-A2-A0YH TCGA-A2-A0YH-01 Luminal B -TCGA-A2-A0YG TCGA-A2-A0YG-01 Luminal B -TCGA-A2-A0EY TCGA-A2-A0EY-01 Luminal B -TCGA-A2-A0D4 TCGA-A2-A0D4-01 Luminal B -TCGA-BH-A0AY TCGA-BH-A0AY-01 Luminal B -TCGA-E2-A107 TCGA-E2-A107-01 Luminal B -TCGA-AO-A0JI TCGA-AO-A0JI-01 Luminal B -TCGA-E2-A10C TCGA-E2-A10C-01 Luminal B -TCGA-E2-A10A TCGA-E2-A10A-01 Luminal B -TCGA-BH-A0C0 TCGA-BH-A0C0-01 Luminal B -TCGA-E2-A109 TCGA-E2-A109-01 Luminal B -TCGA-AO-A0JC TCGA-AO-A0JC-01 Luminal B -TCGA-BH-A0HW TCGA-BH-A0HW-01 Luminal B -TCGA-AO-A0JD TCGA-AO-A0JD-01 Luminal B -TCGA-AO-A0JM TCGA-AO-A0JM-01 Luminal B -TCGA-A2-A0CW TCGA-A2-A0CW-01 Luminal B -TCGA-A2-A0ER TCGA-A2-A0ER-01 Luminal B -TCGA-A2-A0CT TCGA-A2-A0CT-01 Luminal B -TCGA-AO-A12B TCGA-AO-A12B-01 Luminal B -TCGA-A2-A04R TCGA-A2-A04R-01 Luminal B -TCGA-B6-A0IM TCGA-B6-A0IM-01 Luminal B -TCGA-AO-A03P TCGA-AO-A03P-01 Luminal B -TCGA-A1-A0SM TCGA-A1-A0SM-01 Luminal B -TCGA-A8-A06N TCGA-A8-A06N-01 Luminal B -TCGA-A8-A06O TCGA-A8-A06O-01 Luminal B -TCGA-A8-A06Q TCGA-A8-A06Q-01 Luminal B -TCGA-A8-A06R TCGA-A8-A06R-01 Luminal B -TCGA-A8-A06Z TCGA-A8-A06Z-01 Luminal B -TCGA-A8-A079 TCGA-A8-A079-01 Luminal B -TCGA-A8-A07L TCGA-A8-A07L-01 Luminal B -TCGA-A8-A07S TCGA-A8-A07S-01 Luminal B -TCGA-A8-A07W TCGA-A8-A07W-01 Luminal B -TCGA-A8-A07Z TCGA-A8-A07Z-01 Luminal B -TCGA-A8-A082 TCGA-A8-A082-01 Luminal B -TCGA-A8-A084 TCGA-A8-A084-01 Luminal B -TCGA-A8-A085 TCGA-A8-A085-01 Luminal B -TCGA-A8-A08F TCGA-A8-A08F-01 Luminal B -TCGA-A8-A08G TCGA-A8-A08G-01 Luminal B -TCGA-A8-A08I TCGA-A8-A08I-01 Luminal B -TCGA-A8-A08P TCGA-A8-A08P-01 Luminal B -TCGA-A8-A095 TCGA-A8-A095-01 Luminal B -TCGA-A8-A096 TCGA-A8-A096-01 Luminal B -TCGA-A8-A097 TCGA-A8-A097-01 Luminal B -TCGA-A8-A09C TCGA-A8-A09C-01 Luminal B -TCGA-A8-A09D TCGA-A8-A09D-01 Luminal B -TCGA-A8-A09I TCGA-A8-A09I-01 Luminal B -TCGA-A8-A09M TCGA-A8-A09M-01 Luminal B -TCGA-A8-A09N TCGA-A8-A09N-01 Luminal B -TCGA-A8-A09Q TCGA-A8-A09Q-01 Luminal B -TCGA-A8-A09R TCGA-A8-A09R-01 Luminal B -TCGA-A8-A09W TCGA-A8-A09W-01 Luminal B -TCGA-A8-A09Z TCGA-A8-A09Z-01 Luminal B -TCGA-A8-A0A9 TCGA-A8-A0A9-01 Luminal B -TCGA-A8-A0AB TCGA-A8-A0AB-01 Luminal B -TCGA-AN-A03Y TCGA-AN-A03Y-01 Luminal B -TCGA-AN-A041 TCGA-AN-A041-01 Luminal B -TCGA-AN-A049 TCGA-AN-A049-01 Luminal B -TCGA-AN-A0AJ TCGA-AN-A0AJ-01 Luminal B -TCGA-AN-A0AK TCGA-AN-A0AK-01 Luminal B -TCGA-AN-A0AM TCGA-AN-A0AM-01 Luminal B -TCGA-AN-A0AS TCGA-AN-A0AS-01 Luminal B -TCGA-AN-A0FF TCGA-AN-A0FF-01 Luminal B -TCGA-AN-A0FK TCGA-AN-A0FK-01 Luminal B -TCGA-AN-A0FY TCGA-AN-A0FY-01 Luminal B -TCGA-AN-A0XR TCGA-AN-A0XR-01 Luminal B -TCGA-AN-A0XW TCGA-AN-A0XW-01 Luminal B -TCGA-AR-A0TQ TCGA-AR-A0TQ-01 Luminal B -TCGA-AR-A0TT TCGA-AR-A0TT-01 Luminal B -TCGA-AR-A0TV TCGA-AR-A0TV-01 Luminal B -TCGA-AR-A0TZ TCGA-AR-A0TZ-01 Luminal B -TCGA-AR-A0U3 TCGA-AR-A0U3-01 Luminal B -TCGA-AR-A1AV TCGA-AR-A1AV-01 Luminal B -TCGA-BH-A0AU TCGA-BH-A0AU-01 Luminal B -TCGA-BH-A0B5 TCGA-BH-A0B5-01 Luminal B -TCGA-BH-A0BF TCGA-BH-A0BF-01 Luminal B -TCGA-BH-A0BZ TCGA-BH-A0BZ-01 Luminal B -TCGA-BH-A0C3 TCGA-BH-A0C3-01 Luminal B -TCGA-BH-A0C7 TCGA-BH-A0C7-01 Luminal B -TCGA-BH-A0DD TCGA-BH-A0DD-01 Luminal B -TCGA-BH-A0W3 TCGA-BH-A0W3-01 Luminal B -TCGA-BH-A18F TCGA-BH-A18F-01 Luminal B -TCGA-C8-A12M TCGA-C8-A12M-01 Luminal B -TCGA-C8-A12U TCGA-C8-A12U-01 Luminal B -TCGA-C8-A12W TCGA-C8-A12W-01 Luminal B -TCGA-C8-A12X TCGA-C8-A12X-01 Luminal B -TCGA-C8-A1HG TCGA-C8-A1HG-01 Luminal B -TCGA-C8-A1HL TCGA-C8-A1HL-01 Luminal B -TCGA-C8-A1HM TCGA-C8-A1HM-01 Luminal B -TCGA-C8-A1HN TCGA-C8-A1HN-01 Luminal B -TCGA-E2-A14O TCGA-E2-A14O-01 Luminal B -TCGA-E2-A14S TCGA-E2-A14S-01 Luminal B -TCGA-E2-A14W TCGA-E2-A14W-01 Luminal B -TCGA-E2-A155 TCGA-E2-A155-01 Luminal B -TCGA-E2-A15A TCGA-E2-A15A-01 Luminal B -TCGA-E2-A15K TCGA-E2-A15K-01 Luminal B -TCGA-E2-A15L TCGA-E2-A15L-01 Luminal B -TCGA-E2-A15M TCGA-E2-A15M-01 Luminal B -TCGA-E2-A15S TCGA-E2-A15S-01 Luminal B -TCGA-E2-A15T TCGA-E2-A15T-01 Luminal B -TCGA-AO-A03U TCGA-AO-A03U-01 NA -TCGA-B6-A0IE TCGA-B6-A0IE-01 NA -TCGA-A2-A0YK TCGA-A2-A0YK-01 NA -TCGA-E2-A108 TCGA-E2-A108-01 Claudin low -TCGA-AO-A0JB TCGA-AO-A0JB-01 NA -TCGA-AO-A03R TCGA-AO-A03R-01 NA -TCGA-AO-A03T TCGA-AO-A03T-01 NA -TCGA-AR-A1AO TCGA-AR-A1AO-01 Claudin low -TCGA-A2-A0YT TCGA-A2-A0YT-01 Luminal B -TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01 NA -TCGA-EW-A1P8 TCGA-EW-A1P8-01 NA -TCGA-E2-A1LK TCGA-E2-A1LK-01 NA -TCGA-BH-A1EY TCGA-BH-A1EY-01 NA -TCGA-BH-A1F8 TCGA-BH-A1F8-01 NA -TCGA-BH-A1F2 TCGA-BH-A1F2-01 NA -TCGA-BH-A1FD TCGA-BH-A1FD-01 NA -TCGA-BH-A1FH TCGA-BH-A1FH-01 NA -TCGA-BH-A203 TCGA-BH-A203-01 NA -TCGA-BH-A1FM TCGA-BH-A1FM-01 NA -TCGA-BH-A1EX TCGA-BH-A1EX-01 NA -TCGA-BH-A1FL TCGA-BH-A1FL-01 NA -TCGA-BH-A208 TCGA-BH-A208-01 NA -TCGA-GM-A2D9 TCGA-GM-A2D9-01 NA -TCGA-BH-A1FJ TCGA-BH-A1FJ-01 NA -TCGA-BH-A1EN TCGA-BH-A1EN-01 NA -TCGA-BH-A1FN TCGA-BH-A1FN-01 NA -TCGA-BH-A1FU TCGA-BH-A1FU-01 NA -TCGA-BH-A1FE TCGA-BH-A1FE-01 NA -TCGA-BH-A204 TCGA-BH-A204-01 NA -TCGA-BH-A1F5 TCGA-BH-A1F5-01 NA -TCGA-AR-A256 TCGA-AR-A256-01 NA -TCGA-BH-A1F6 TCGA-BH-A1F6-01 NA -TCGA-BH-A1FC TCGA-BH-A1FC-01 NA -TCGA-BH-A1FB TCGA-BH-A1FB-01 NA -TCGA-BH-A1FG TCGA-BH-A1FG-01 NA -TCGA-BH-A209 TCGA-BH-A209-01 NA -TCGA-BH-A1FR TCGA-BH-A1FR-01 NA -TCGA-AO-A1KS TCGA-AO-A1KS-01 NA -TCGA-A7-A13G TCGA-A7-A13G-01 NA -TCGA-D8-A1JS TCGA-D8-A1JS-01 NA -TCGA-A7-A0DC TCGA-A7-A0DC-01 Luminal A -TCGA-D8-A1JT TCGA-D8-A1JT-01 NA -TCGA-A7-A26E TCGA-A7-A26E-01 NA -TCGA-D8-A1JH TCGA-D8-A1JH-01 NA -TCGA-D8-A1JU TCGA-D8-A1JU-01 NA -TCGA-AO-A1KO TCGA-AO-A1KO-01 NA -TCGA-AO-A1KT TCGA-AO-A1KT-01 NA -TCGA-AO-A0J5 TCGA-AO-A0J5-01 Luminal A -TCGA-B6-A1KC TCGA-B6-A1KC-01 NA -TCGA-AO-A1KQ TCGA-AO-A1KQ-01 NA -TCGA-B6-A1KI TCGA-B6-A1KI-01 NA -TCGA-AO-A1KP TCGA-AO-A1KP-01 NA -TCGA-B6-A1KF TCGA-B6-A1KF-01 NA -TCGA-B6-A1KN TCGA-B6-A1KN-01 NA -TCGA-D8-A1XO TCGA-D8-A1XO-01 NA -TCGA-D8-A1XT TCGA-D8-A1XT-01 NA -TCGA-A1-A0SP TCGA-A1-A0SP-01 NA -TCGA-D8-A1J8 TCGA-D8-A1J8-01 NA -TCGA-D8-A1JF TCGA-D8-A1JF-01 NA -TCGA-D8-A1JG TCGA-D8-A1JG-01 NA -TCGA-D8-A1XS TCGA-D8-A1XS-01 NA -TCGA-A1-A0SB TCGA-A1-A0SB-01 NA -TCGA-A1-A0SF TCGA-A1-A0SF-01 NA -TCGA-A1-A0SG TCGA-A1-A0SG-01 NA -TCGA-A1-A0SI TCGA-A1-A0SI-01 NA -TCGA-A1-A0SN TCGA-A1-A0SN-01 NA -TCGA-A1-A0SQ TCGA-A1-A0SQ-01 NA -TCGA-A2-A1FV TCGA-A2-A1FV-01 NA -TCGA-A2-A1FW TCGA-A2-A1FW-01 NA -TCGA-A2-A1FX TCGA-A2-A1FX-01 NA -TCGA-A2-A1FZ TCGA-A2-A1FZ-01 NA -TCGA-A2-A1G0 TCGA-A2-A1G0-01 NA -TCGA-A2-A1G1 TCGA-A2-A1G1-01 NA -TCGA-A2-A1G4 TCGA-A2-A1G4-01 NA -TCGA-A2-A1G6 TCGA-A2-A1G6-01 NA -TCGA-A2-A259 TCGA-A2-A259-01 NA -TCGA-A2-A25A TCGA-A2-A25A-01 NA -TCGA-A2-A25B TCGA-A2-A25B-01 NA -TCGA-A2-A25C TCGA-A2-A25C-01 NA -TCGA-A2-A25D TCGA-A2-A25D-01 NA -TCGA-A2-A25E TCGA-A2-A25E-01 NA -TCGA-A2-A25F TCGA-A2-A25F-01 NA -TCGA-A7-A26F TCGA-A7-A26F-01 NA -TCGA-A7-A26G TCGA-A7-A26G-01 NA -TCGA-A7-A26H TCGA-A7-A26H-01 NA -TCGA-A7-A26I TCGA-A7-A26I-01 NA -TCGA-A7-A26J TCGA-A7-A26J-01 NA -TCGA-A8-A08S TCGA-A8-A08S-01 Luminal B -TCGA-A8-A09E TCGA-A8-A09E-01 Luminal B -TCGA-A8-A09K TCGA-A8-A09K-01 Luminal B -TCGA-AC-A23C TCGA-AC-A23C-01 NA -TCGA-AC-A23E TCGA-AC-A23E-01 NA -TCGA-AC-A23H TCGA-AC-A23H-01 NA -TCGA-AO-A1KR TCGA-AO-A1KR-01 NA -TCGA-AQ-A1H2 TCGA-AQ-A1H2-01 NA -TCGA-AQ-A1H3 TCGA-AQ-A1H3-01 NA -TCGA-AR-A24H TCGA-AR-A24H-01 NA -TCGA-AR-A24K TCGA-AR-A24K-01 NA -TCGA-AR-A24L TCGA-AR-A24L-01 NA -TCGA-AR-A24M TCGA-AR-A24M-01 NA -TCGA-AR-A24N TCGA-AR-A24N-01 NA -TCGA-AR-A24O TCGA-AR-A24O-01 NA -TCGA-AR-A24P TCGA-AR-A24P-01 NA -TCGA-AR-A24Q TCGA-AR-A24Q-01 NA -TCGA-AR-A24R TCGA-AR-A24R-01 NA -TCGA-AR-A24S TCGA-AR-A24S-01 NA -TCGA-AR-A24T TCGA-AR-A24T-01 NA -TCGA-AR-A24U TCGA-AR-A24U-01 NA -TCGA-AR-A24V TCGA-AR-A24V-01 NA -TCGA-AR-A24X TCGA-AR-A24X-01 NA -TCGA-AR-A24Z TCGA-AR-A24Z-01 NA -TCGA-AR-A250 TCGA-AR-A250-01 NA -TCGA-AR-A251 TCGA-AR-A251-01 NA -TCGA-AR-A252 TCGA-AR-A252-01 NA -TCGA-AR-A254 TCGA-AR-A254-01 NA -TCGA-AR-A255 TCGA-AR-A255-01 NA -TCGA-BH-A0B2 TCGA-BH-A0B2-01 Luminal A -TCGA-BH-A0DV TCGA-BH-A0DV-01 NA -TCGA-BH-A201 TCGA-BH-A201-01 NA -TCGA-BH-A202 TCGA-BH-A202-01 NA -TCGA-BH-A28Q TCGA-BH-A28Q-01 NA -TCGA-C8-A1HE TCGA-C8-A1HE-01 NA -TCGA-C8-A1HJ TCGA-C8-A1HJ-01 NA -TCGA-C8-A1HK TCGA-C8-A1HK-01 NA -TCGA-C8-A1HO TCGA-C8-A1HO-01 NA -TCGA-C8-A26V TCGA-C8-A26V-01 NA -TCGA-C8-A26W TCGA-C8-A26W-01 NA -TCGA-C8-A26X TCGA-C8-A26X-01 NA -TCGA-C8-A26Y TCGA-C8-A26Y-01 NA -TCGA-C8-A26Z TCGA-C8-A26Z-01 NA -TCGA-C8-A273 TCGA-C8-A273-01 NA -TCGA-C8-A274 TCGA-C8-A274-01 NA -TCGA-C8-A275 TCGA-C8-A275-01 NA -TCGA-C8-A278 TCGA-C8-A278-01 NA -TCGA-C8-A27A TCGA-C8-A27A-01 NA -TCGA-C8-A27B TCGA-C8-A27B-01 NA -TCGA-D8-A146 TCGA-D8-A146-01 Luminal A -TCGA-D8-A1J9 TCGA-D8-A1J9-01 NA -TCGA-D8-A1JA TCGA-D8-A1JA-01 NA -TCGA-D8-A1JB TCGA-D8-A1JB-01 NA -TCGA-D8-A1JC TCGA-D8-A1JC-01 NA -TCGA-D8-A1JD TCGA-D8-A1JD-01 NA -TCGA-D8-A1JE TCGA-D8-A1JE-01 NA -TCGA-D8-A1JI TCGA-D8-A1JI-01 NA -TCGA-D8-A1JJ TCGA-D8-A1JJ-01 NA -TCGA-D8-A1JK TCGA-D8-A1JK-01 NA -TCGA-D8-A1JL TCGA-D8-A1JL-01 NA -TCGA-D8-A1JM TCGA-D8-A1JM-01 NA -TCGA-D8-A1JN TCGA-D8-A1JN-01 NA -TCGA-D8-A1JP TCGA-D8-A1JP-01 NA -TCGA-D8-A1X5 TCGA-D8-A1X5-01 NA -TCGA-D8-A1X6 TCGA-D8-A1X6-01 NA -TCGA-D8-A1X7 TCGA-D8-A1X7-01 NA -TCGA-D8-A1X8 TCGA-D8-A1X8-01 NA -TCGA-D8-A1X9 TCGA-D8-A1X9-01 NA -TCGA-D8-A1XA TCGA-D8-A1XA-01 NA -TCGA-D8-A1XB TCGA-D8-A1XB-01 NA -TCGA-D8-A1XC TCGA-D8-A1XC-01 NA -TCGA-D8-A1XD TCGA-D8-A1XD-01 NA -TCGA-D8-A1XF TCGA-D8-A1XF-01 NA -TCGA-D8-A1XG TCGA-D8-A1XG-01 NA -TCGA-D8-A1XJ TCGA-D8-A1XJ-01 NA -TCGA-D8-A1XK TCGA-D8-A1XK-01 NA -TCGA-D8-A1XL TCGA-D8-A1XL-01 NA -TCGA-D8-A1XM TCGA-D8-A1XM-01 NA -TCGA-D8-A1XQ TCGA-D8-A1XQ-01 NA -TCGA-D8-A1XR TCGA-D8-A1XR-01 NA -TCGA-D8-A1XU TCGA-D8-A1XU-01 NA -TCGA-D8-A1XV TCGA-D8-A1XV-01 NA -TCGA-D8-A1XW TCGA-D8-A1XW-01 NA -TCGA-D8-A1XY TCGA-D8-A1XY-01 NA -TCGA-D8-A1XZ TCGA-D8-A1XZ-01 NA -TCGA-D8-A1Y0 TCGA-D8-A1Y0-01 NA -TCGA-D8-A1Y1 TCGA-D8-A1Y1-01 NA -TCGA-D8-A1Y2 TCGA-D8-A1Y2-01 NA -TCGA-D8-A1Y3 TCGA-D8-A1Y3-01 NA -TCGA-D8-A27E TCGA-D8-A27E-01 NA -TCGA-D8-A27F TCGA-D8-A27F-01 NA -TCGA-D8-A27G TCGA-D8-A27G-01 NA -TCGA-D8-A27H TCGA-D8-A27H-01 NA -TCGA-D8-A27I TCGA-D8-A27I-01 NA -TCGA-D8-A27K TCGA-D8-A27K-01 NA -TCGA-D8-A27L TCGA-D8-A27L-01 NA -TCGA-D8-A27M TCGA-D8-A27M-01 NA -TCGA-D8-A27N TCGA-D8-A27N-01 NA -TCGA-D8-A27P TCGA-D8-A27P-01 NA -TCGA-D8-A27R TCGA-D8-A27R-01 NA -TCGA-D8-A27T TCGA-D8-A27T-01 NA -TCGA-D8-A27V TCGA-D8-A27V-01 NA -TCGA-D8-A27W TCGA-D8-A27W-01 NA -TCGA-E2-A1IE TCGA-E2-A1IE-01 NA -TCGA-E2-A1IF TCGA-E2-A1IF-01 NA -TCGA-E2-A1IG TCGA-E2-A1IG-01 NA -TCGA-E2-A1IH TCGA-E2-A1IH-01 NA -TCGA-E2-A1II TCGA-E2-A1II-01 NA -TCGA-E2-A1IJ TCGA-E2-A1IJ-01 NA -TCGA-E2-A1IK TCGA-E2-A1IK-01 NA -TCGA-E2-A1IL TCGA-E2-A1IL-01 NA -TCGA-E2-A1IN TCGA-E2-A1IN-01 NA -TCGA-E2-A1IO TCGA-E2-A1IO-01 NA -TCGA-E2-A1IP TCGA-E2-A1IP-01 NA -TCGA-E2-A1IU TCGA-E2-A1IU-01 NA -TCGA-E2-A1L6 TCGA-E2-A1L6-01 NA -TCGA-E2-A1L7 TCGA-E2-A1L7-01 NA -TCGA-E2-A1L8 TCGA-E2-A1L8-01 NA -TCGA-E2-A1L9 TCGA-E2-A1L9-01 NA -TCGA-E2-A1LA TCGA-E2-A1LA-01 NA -TCGA-E2-A1LB TCGA-E2-A1LB-01 NA -TCGA-E2-A1LG TCGA-E2-A1LG-01 NA -TCGA-E2-A1LH TCGA-E2-A1LH-01 NA -TCGA-E2-A1LI TCGA-E2-A1LI-01 NA -TCGA-E2-A1LL TCGA-E2-A1LL-01 NA -TCGA-E2-A1LS TCGA-E2-A1LS-01 NA -TCGA-E9-A1N3 TCGA-E9-A1N3-01 NA -TCGA-E9-A1N4 TCGA-E9-A1N4-01 NA -TCGA-E9-A1N5 TCGA-E9-A1N5-01 NA -TCGA-E9-A1N6 TCGA-E9-A1N6-01 NA -TCGA-E9-A1N8 TCGA-E9-A1N8-01 NA -TCGA-E9-A1N9 TCGA-E9-A1N9-01 NA -TCGA-E9-A1NA TCGA-E9-A1NA-01 NA -TCGA-E9-A1NC TCGA-E9-A1NC-01 NA -TCGA-E9-A1ND TCGA-E9-A1ND-01 NA -TCGA-E9-A1NE TCGA-E9-A1NE-01 NA -TCGA-E9-A1NF TCGA-E9-A1NF-01 NA -TCGA-E9-A1NG TCGA-E9-A1NG-01 NA -TCGA-E9-A1NH TCGA-E9-A1NH-01 NA -TCGA-E9-A1NI TCGA-E9-A1NI-01 NA -TCGA-E9-A1QZ TCGA-E9-A1QZ-01 NA -TCGA-E9-A1R0 TCGA-E9-A1R0-01 NA -TCGA-E9-A1R2 TCGA-E9-A1R2-01 NA -TCGA-E9-A1R3 TCGA-E9-A1R3-01 NA -TCGA-E9-A1R4 TCGA-E9-A1R4-01 NA -TCGA-E9-A1R5 TCGA-E9-A1R5-01 NA -TCGA-E9-A1R6 TCGA-E9-A1R6-01 NA -TCGA-E9-A1R7 TCGA-E9-A1R7-01 NA -TCGA-E9-A1RA TCGA-E9-A1RA-01 NA -TCGA-E9-A1RB TCGA-E9-A1RB-01 NA -TCGA-E9-A1RC TCGA-E9-A1RC-01 NA -TCGA-E9-A1RD TCGA-E9-A1RD-01 NA -TCGA-E9-A1RE TCGA-E9-A1RE-01 NA -TCGA-E9-A1RF TCGA-E9-A1RF-01 NA -TCGA-E9-A1RG TCGA-E9-A1RG-01 NA -TCGA-E9-A1RH TCGA-E9-A1RH-01 NA -TCGA-E9-A1RI TCGA-E9-A1RI-01 NA -TCGA-E9-A226 TCGA-E9-A226-01 NA -TCGA-E9-A227 TCGA-E9-A227-01 NA -TCGA-E9-A228 TCGA-E9-A228-01 NA -TCGA-E9-A229 TCGA-E9-A229-01 NA -TCGA-E9-A22A TCGA-E9-A22A-01 NA -TCGA-E9-A22B TCGA-E9-A22B-01 NA -TCGA-E9-A22D TCGA-E9-A22D-01 NA -TCGA-E9-A22E TCGA-E9-A22E-01 NA -TCGA-E9-A22G TCGA-E9-A22G-01 NA -TCGA-E9-A22H TCGA-E9-A22H-01 NA -TCGA-E9-A243 TCGA-E9-A243-01 NA -TCGA-E9-A244 TCGA-E9-A244-01 NA -TCGA-E9-A245 TCGA-E9-A245-01 NA -TCGA-E9-A247 TCGA-E9-A247-01 NA -TCGA-E9-A248 TCGA-E9-A248-01 NA -TCGA-E9-A249 TCGA-E9-A249-01 NA -TCGA-E9-A24A TCGA-E9-A24A-01 NA -TCGA-EW-A1IW TCGA-EW-A1IW-01 NA -TCGA-EW-A1IX TCGA-EW-A1IX-01 NA -TCGA-EW-A1IY TCGA-EW-A1IY-01 NA -TCGA-EW-A1IZ TCGA-EW-A1IZ-01 NA -TCGA-EW-A1J1 TCGA-EW-A1J1-01 NA -TCGA-EW-A1J2 TCGA-EW-A1J2-01 NA -TCGA-EW-A1J3 TCGA-EW-A1J3-01 NA -TCGA-EW-A1J5 TCGA-EW-A1J5-01 NA -TCGA-EW-A1J6 TCGA-EW-A1J6-01 NA -TCGA-EW-A1OV TCGA-EW-A1OV-01 NA -TCGA-EW-A1OW TCGA-EW-A1OW-01 NA -TCGA-EW-A1OX TCGA-EW-A1OX-01 NA -TCGA-EW-A1OY TCGA-EW-A1OY-01 NA -TCGA-EW-A1OZ TCGA-EW-A1OZ-01 NA -TCGA-EW-A1P0 TCGA-EW-A1P0-01 NA -TCGA-EW-A1P1 TCGA-EW-A1P1-01 NA -TCGA-EW-A1P3 TCGA-EW-A1P3-01 NA -TCGA-EW-A1P4 TCGA-EW-A1P4-01 NA -TCGA-EW-A1P5 TCGA-EW-A1P5-01 NA -TCGA-EW-A1P6 TCGA-EW-A1P6-01 NA -TCGA-EW-A1P7 TCGA-EW-A1P7-01 NA -TCGA-EW-A1PA TCGA-EW-A1PA-01 NA -TCGA-EW-A1PB TCGA-EW-A1PB-01 NA -TCGA-EW-A1PD TCGA-EW-A1PD-01 NA -TCGA-EW-A1PE TCGA-EW-A1PE-01 NA -TCGA-EW-A1PF TCGA-EW-A1PF-01 NA -TCGA-EW-A1PG TCGA-EW-A1PG-01 NA -TCGA-EW-A1PH TCGA-EW-A1PH-01 NA -TCGA-EW-A2FS TCGA-EW-A2FS-01 NA -TCGA-EW-A2FV TCGA-EW-A2FV-01 NA -TCGA-EW-A2FW TCGA-EW-A2FW-01 NA -TCGA-GM-A2DA TCGA-GM-A2DA-01 NA -TCGA-GM-A2DB TCGA-GM-A2DB-01 NA -TCGA-GM-A2DC TCGA-GM-A2DC-01 NA -TCGA-GM-A2DD TCGA-GM-A2DD-01 NA -TCGA-GM-A2DF TCGA-GM-A2DF-01 NA -TCGA-GM-A2DH TCGA-GM-A2DH-01 NA -TCGA-GM-A2DI TCGA-GM-A2DI-01 NA -TCGA-GM-A2DK TCGA-GM-A2DK-01 NA -TCGA-GM-A2DL TCGA-GM-A2DL-01 NA -TCGA-GM-A2DM TCGA-GM-A2DM-01 NA -TCGA-GM-A2DN TCGA-GM-A2DN-01 NA -TCGA-GM-A2DO TCGA-GM-A2DO-01 NA -TCGA-AR-A24W TCGA-AR-A24W-01 NA -TCGA-AC-A2B8 TCGA-AC-A2B8-01 NA -TCGA-AC-A2FF TCGA-AC-A2FF-01 NA -TCGA-AC-A2FB TCGA-AC-A2FB-01 NA -TCGA-AC-A2FG TCGA-AC-A2FG-01 NA -TCGA-GI-A2C8 TCGA-GI-A2C8-01 NA -TCGA-E9-A295 TCGA-E9-A295-01 NA -TCGA-E2-A15E TCGA-E2-A15E-06 NA -TCGA-A2-A0T2 TCGA-A2-A0T2-01 NA diff --git a/core/src/test/scripts/test_data/study_wr_clin/meta_expression_median.txt b/core/src/test/scripts/test_data/study_wr_clin/meta_expression_median.txt deleted file mode 100644 index 9c2e8179492..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/meta_expression_median.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: MRNA_EXPRESSION -datatype: Z-SCORE -stable_id: mrna -profile_description: Expression levels (Agilent microarray). -show_profile_in_analysis_tab: false -profile_name: mRNA expression (microarray) -data_filename: data_expression_median.txt diff --git a/core/src/test/scripts/test_data/study_wr_clin/meta_patients.txt b/core/src/test/scripts/test_data/study_wr_clin/meta_patients.txt deleted file mode 100644 index 8a479ddc618..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/meta_patients.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: PATIENT_ATTRIBUTES -data_filename: data_patients.txt diff --git a/core/src/test/scripts/test_data/study_wr_clin/meta_samples.txt b/core/src/test/scripts/test_data/study_wr_clin/meta_samples.txt deleted file mode 100644 index 2b6b0e1f0bd..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/meta_samples.txt +++ /dev/null @@ -1,7 +0,0 @@ -cancer_study_identifier: brca_tcga_pub -genetic_alteration_type: CLINICAL -datatype: FREE-FORM -show_profile_in_analysis_tab: false -profile_description: Sample clinical data for this study. -profile_name: Sample clinical data for brca_tcga_pub. -data_filename: data_samples.txt diff --git a/core/src/test/scripts/test_data/study_wr_clin/meta_study.txt b/core/src/test/scripts/test_data/study_wr_clin/meta_study.txt deleted file mode 100644 index c6a63249bbd..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/meta_study.txt +++ /dev/null @@ -1,7 +0,0 @@ -type_of_cancer: brca -cancer_study_identifier: brca_tcga_pub -name: Breast Invasive Carcinoma (TCGA, Nature 2012) -description: The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal. -citation: TCGA, Nature 2012 -pmid: 23000897 -groups: PUBLIC;GDAC;SU2C-PI3K diff --git a/core/src/test/scripts/test_data/study_wr_clin/result_report.html b/core/src/test/scripts/test_data/study_wr_clin/result_report.html deleted file mode 100644 index 4ceb7a29ead..00000000000 --- a/core/src/test/scripts/test_data/study_wr_clin/result_report.html +++ /dev/null @@ -1,397 +0,0 @@ - - - - - - - - - - - - - cBioPortal validation report: study in 'test_data/study_wr_clin/' - - - - - -
    -
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    cBioPortal validation report

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    Study directory:
    test_data/study_wr_clin/

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    For details, please see the documentation on file formats supported by cBioPortal

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    cBioPortal version unknown -- offline instance

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    - Validation status: - - Failed - -
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Reading portal information from test_data/api_json_system_tests/cancer-types.json–
    Debug––Reading portal information from test_data/api_json_system_tests/genes.json–
    Debug––Reading portal information from test_data/api_json_system_tests/genesets.json–
    Debug––Reading portal information from test_data/api_json_system_tests/genesets_version.json–
    Debug––Reading portal information from test_data/api_json_system_tests/gene-panels.json–
    Debug––Reading portal information from test_data/api_json_system_tests/genesaliases.json–
    Error––No sample attribute file detected–
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Error––Invalid stable id for genetic_alteration_type 'MRNA_EXPRESSION', data_type 'Z-SCORE'; expected one of [mrna_U133_Zscores, rna_seq_mrna_median_Zscores, mrna_median_Zscores, rna_seq_v2_mrna_median_Zscores, rna_seq_v2_mrna_median_normals_Zscores, mirna_median_Zscores, mrna_merged_median_Zscores, mrna_zbynorm, mrna_seq_tpm_Zscores, mrna_seq_cpm_Zscores, rna_seq_mrna_capture_Zscores, mrna_seq_fpkm_capture_Zscores, mrna_seq_fpkm_polya_Zscores, mrna_U133_all_sample_Zscores, mrna_all_sample_Zscores, rna_seq_mrna_median_all_sample_Zscores, mrna_median_all_sample_Zscores, rna_seq_v2_mrna_median_all_sample_Zscores, rna_seq_v2_mrna_median_all_sample_ref_normal_Zscores, mrna_seq_cpm_all_sample_Zscores, mrna_seq_tpm_all_sample_Zscores, rna_seq_mrna_capture_all_sample_Zscores, mrna_seq_fpkm_capture_all_sample_Zscores, mrna_seq_fpkm_polya_all_sample_Zscores, mrna_seq_fpkm_Zscores, mrna_seq_fpkm_all_sample_Zscores]mrna
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    ErrorError: cBioPortal will not know how to load this, please revise or remove
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    - - \ No newline at end of file diff --git a/core/src/test/scripts/test_data/test.xml b/core/src/test/scripts/test_data/test.xml deleted file mode 100644 index f29c23074d2..00000000000 --- a/core/src/test/scripts/test_data/test.xml +++ /dev/null @@ -1,11 +0,0 @@ - - - - 4.0.0 - org.mskcc.cbio - master - pom - Portal Master - unknown - master maven module - diff --git a/core/src/test/scripts/unit_tests_validate_data.py b/core/src/test/scripts/unit_tests_validate_data.py deleted file mode 100755 index 3048a821d7d..00000000000 --- a/core/src/test/scripts/unit_tests_validate_data.py +++ /dev/null @@ -1,3091 +0,0 @@ -#!/usr/bin/env python3 - -""" -Copyright (c) 2016 The Hyve B.V. -This code is licensed under the GNU Affero General Public License (AGPL), -version 3, or (at your option) any later version. -""" - -import unittest -from unittest.mock import Mock -import sys -import logging.handlers -import textwrap -from pathlib import Path -from contextlib import contextmanager, suppress -from tempfile import TemporaryDirectory - -from importer import cbioportal_common -from importer import validateData - - -# globals for mock data used throughout the module -DEFINED_SAMPLE_IDS = None -DEFINED_SAMPLE_ATTRIBUTES = None -PATIENTS_WITH_SAMPLES = None -PORTAL_INSTANCE = None -prior_validated_sample_ids = None -prior_validated_geneset_ids = None -mutation_sample_ids = None - -def setUpModule(): - """Initialise mock data used throughout the module.""" - global DEFINED_SAMPLE_IDS - global DEFINED_SAMPLE_ATTRIBUTES - global PATIENTS_WITH_SAMPLES - global PORTAL_INSTANCE - global mutation_sample_ids - # mock information parsed from the sample attribute file - DEFINED_SAMPLE_IDS = ["TCGA-A1-A0SB-01", "TCGA-A1-A0SD-01", "TCGA-A1-A0SE-01", "TCGA-A1-A0SH-01", "TCGA-A2-A04U-01", - "TCGA-B6-A0RS-01", "TCGA-BH-A0HP-01", "TCGA-BH-A18P-01", "TCGA-BH-A18H-01", "TCGA-C8-A138-01", - "TCGA-A2-A0EY-01", "TCGA-A8-A08G-01", "TCGA-A2-A04P-01"] - DEFINED_SAMPLE_ATTRIBUTES = {'PATIENT_ID', 'SAMPLE_ID', 'SUBTYPE', 'CANCER_TYPE', 'CANCER_TYPE_DETAILED'} - PATIENTS_WITH_SAMPLES = set("TEST-PAT{}".format(num) for - num in list(range(1, 10)) if - num != 8) - mutation_sample_ids = ["TCGA-A1-A0SB-01", "TCGA-A1-A0SD-01"] - logger = logging.getLogger(__name__) - # parse mock API results from a local directory - PORTAL_INSTANCE = validateData.load_portal_info('test_data/api_json_unit_tests', - logger, - offline=True) - - -@contextmanager -def temp_inputfolder(file_dict): - """Context manager that creates the specified files in a temporary folder. - - The keys of the dictionary (pathlikes or strings) are used as the file - names, and the values as the corresponding file contents. - """ - with TemporaryDirectory() as study_dir_name: - study_dir = Path(study_dir_name) - for filename, contents in file_dict.items(): - # create the directory to make the file in, if it's not there yet - file_directory = (study_dir / filename).parent - with suppress(FileExistsError): - file_directory.mkdir(parents=True) - # write the contents to the file - with (study_dir / filename).open('w', encoding='utf-8') as f: - f.write(contents) - yield str(study_dir) - - -class LogBufferTestCase(unittest.TestCase): - - """Superclass for testcases that want to capture log records emitted. - - Defines a self.logger to log to, and a method get_log_records() to - collect the list of LogRecords emitted by this logger. In addition, - defines a function print_log_records to format a list of LogRecords - to standard output. - """ - - def setUp(self): - """Set up a logger with a buffering handler.""" - self.logger = logging.getLogger(self.__class__.__name__) - self.logger.setLevel(logging.DEBUG) - # add a handler to buffer log records for validation - self.buffer_handler = logging.handlers.BufferingHandler(capacity=1e6) - self.logger.addHandler(self.buffer_handler) - # add a handler to pretty-print log messages to the output - self.output_handler = logging.StreamHandler(sys.stdout) - self.output_handler.setFormatter( - cbioportal_common.LogfileStyleFormatter( - 'test_data/')) - self.logger.addHandler(self.output_handler) - - def tearDown(self): - """Remove the logger handlers (and any buffers they may have).""" - self.logger.removeHandler(self.output_handler) - self.logger.removeHandler(self.buffer_handler) - - def get_log_records(self): - """Get the log records written to the logger since the last call.""" - recs = [rec for rec in self.buffer_handler.buffer] - self.buffer_handler.flush() - return recs - - -class DataFileTestCase(LogBufferTestCase): - - """Superclass for testcases validating a particular data file. - - Provides a validate() method to validate the data file with a - particular validator class and collect the log records emitted. - """ - - def validate(self, data_filename, validator_class, - extra_meta_fields=None, - relaxed_mode=False, strict_maf_checks=False, - *, portal_instance=None): - """Validate a file with a Validator and return the log records.""" - if portal_instance is None: - portal_instance = PORTAL_INSTANCE - meta_dict = {'data_filename': data_filename} - if extra_meta_fields is not None: - meta_dict.update(extra_meta_fields) - validator = validator_class('test_data', meta_dict, - portal_instance, - self.logger, relaxed_mode, - strict_maf_checks) - validator.validate() - return self.get_log_records() - - -class PostClinicalDataFileTestCase(DataFileTestCase): - - """Superclass for validating data files to be read after sample attr files. - - I.e. DEFINED_SAMPLE_IDS will be initialised with a list of sample - identifiers defined in the study. - """ - - def setUp(self): - """Prepare for validating a file by setting the samples defined.""" - super(PostClinicalDataFileTestCase, self).setUp() - self.orig_defined_sample_ids = validateData.DEFINED_SAMPLE_IDS - validateData.DEFINED_SAMPLE_IDS = DEFINED_SAMPLE_IDS - self.orig_defined_sample_attributes = validateData.DEFINED_SAMPLE_IDS - validateData.DEFINED_SAMPLE_ATTRIBUTES = DEFINED_SAMPLE_ATTRIBUTES - self.orig_patients_with_samples = validateData.PATIENTS_WITH_SAMPLES - validateData.PATIENTS_WITH_SAMPLES = PATIENTS_WITH_SAMPLES - - # Prepare global variables related to gene sets - self.orig_prior_validated_sample_ids = validateData.prior_validated_sample_ids - validateData.prior_validated_sample_ids = prior_validated_sample_ids - self.orig_prior_validated_geneset_ids = validateData.prior_validated_geneset_ids - validateData.prior_validated_geneset_ids = prior_validated_geneset_ids - - # Prepare global variables related to sample profiled for mutations and gene panels - self.mutation_sample_ids = validateData.mutation_sample_ids - validateData.mutation_sample_ids = mutation_sample_ids - - - def tearDown(self): - """Restore the environment to before setUp() was called.""" - validateData.DEFINED_SAMPLE_IDS = self.orig_defined_sample_ids - validateData.DEFINED_SAMPLE_ATTRIBUTES = self.orig_defined_sample_attributes - validateData.PATIENTS_WITH_SAMPLES = self.orig_patients_with_samples - validateData.prior_validated_sample_ids = self.orig_prior_validated_sample_ids - validateData.prior_validated_geneset_ids = self.orig_prior_validated_geneset_ids - validateData.mutation_sample_ids = self.mutation_sample_ids - super(PostClinicalDataFileTestCase, self).tearDown() - - -# ---------------------------------------------------------------------------- -# Test cases for the various Validator classes found in validateData script - -class ColumnOrderTestCase(DataFileTestCase): - - """Test if column order requirements are appropriately validated.""" - - def test_column_order_validation_SegValidator(self): - """seg validator needs its columns in a specific order. - - Here we serve a file with wrong order and expect validator to log this: - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_seg_wrong_order.txt', - validateData.SegValidator, - extra_meta_fields={'reference_genome_id': - 'hg19'}) - # we expect 2 errors about columns in wrong order, - # and one about the file not being parseable: - self.assertEqual(3, len(record_list)) - # check if both messages come from checkOrderedRequiredColumns: - for error in record_list[:2]: - self.assertEqual("ERROR", error.levelname) - self.assertEqual("_checkOrderedRequiredColumns", error.funcName) - - def test_column_order_validation_ClinicalValidator(self): - """Sample attributes do NOT need their columns in a specific order. - - Here we serve files with different order and no errors or warnings - """ - # set level according to this test case: - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_order1.txt', - validateData.SampleClinicalValidator) - # we expect no errors or warnings - self.assertEqual(0, len(record_list)) - # if the file has another order, this is also OK: - record_list = self.validate('data_clin_order2.txt', - validateData.SampleClinicalValidator) - # again, we expect no errors or warnings - self.assertEqual(0, len(record_list)) - -class UniqueColumnTestCase(PostClinicalDataFileTestCase): - - # create dummy class from FeaturewiseFileValidator - # set the `name` column to be validated for uniqueness - class DummyFeaturewiseFileValidator(validateData.FeaturewiseFileValidator): - REQUIRED_HEADERS = ['id'] - OPTIONAL_HEADERS = ['name'] - def parseFeatureColumns(self, nonsample_col_vals): - return - def checkValue(self, value, column_index): - return - - def test_uniquecolumns_are_accepted(self): - self.logger.setLevel(logging.ERROR) - UniqueColumnTestCase.DummyFeaturewiseFileValidator.UNIQUE_COLUMNS = ['id'] - record_list = self.validate('data_unique_column_test.txt', UniqueColumnTestCase.DummyFeaturewiseFileValidator) - self.assertEqual(0, len(record_list)) - - def test_uniquecolumns_(self): - self.logger.setLevel(logging.ERROR) - UniqueColumnTestCase.DummyFeaturewiseFileValidator.UNIQUE_COLUMNS = ['name'] - record_list = self.validate('data_unique_column_test.txt', UniqueColumnTestCase.DummyFeaturewiseFileValidator) - self.assertEqual(1, len(record_list)) - -class ClinicalColumnDefsTestCase(PostClinicalDataFileTestCase): - - """Tests for validations of the column definitions in a clinical file.""" - - def test_correct_definitions(self): - """Test when all record definitions match with expectations.""" - record_list = self.validate('data_clin_coldefs_correct.txt', - validateData.PatientClinicalValidator) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_invalid_definitions(self): - """Test when attributes are defined with unparseable properties.""" - record_list = self.validate('data_clin_coldefs_invalid_priority.txt', - validateData.PatientClinicalValidator) - # expecting an info message followed by the error, and another error as - # the rest of the file cannot be parsed - self.assertEqual(3, len(record_list)) - # error about the non-numeric priority of the SAUSAGE column - self.assertEqual(logging.ERROR, record_list[1].levelno) - self.assertEqual(4, record_list[1].line_number) - self.assertEqual(6, record_list[1].column_number) - - def test_lowercase_attribute(self): - """Test when attribute is in lower case.""" - record_list = self.validate('data_clin_coldefs_lowercase_attribute.txt', - validateData.PatientClinicalValidator) - # expecting an debug message followed by the error, and rest 2 info messages - self.assertEqual(4, len(record_list)) - # error about the lowercase value of sausage column - self.assertEqual(logging.ERROR, record_list[1].levelno) - self.assertEqual(5, record_list[1].line_number) - self.assertEqual(6, record_list[1].column_number) - self.assertIn('Attribute name not in upper case', record_list[1].getMessage()) - - def test_hardcoded_attributes(self): - - """Test requirements on the data type or level of some attributes.""" - - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_coldefs_hardcoded_attrs.txt', - validateData.PatientClinicalValidator) - self.assertEqual(3, len(record_list)) - record_iterator = iter(record_list) - - # Expect error for OS_MONTHS being a STRING instead of NUMBER - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(3, record.line_number) - self.assertEqual(2, record.column_number) - self.assertIn(record.cause, 'STRING') - - # Expect error for sample attribute in patient clinical data - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(5, record.line_number) - self.assertEqual(6, record.column_number) - self.assertIn(record.cause, 'OTHER_SAMPLE_ID') - - # Expect warning for sample attribute in patient clinical data - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(5, record.line_number) - self.assertEqual(7, record.column_number) - self.assertIn(record.cause, 'METASTATIC_SITE') - - def test_banned_attribute(self): - """Test when attribute is is not allowed.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_coldefs_banned_attribute.txt', - validateData.PatientClinicalValidator) - # expecting 1 error message - self.assertEqual(1, len(record_list)) - record_iterator = iter(record_list) - record = next(record_iterator) - - # error about the banned value of mutation count column - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(5, record.line_number) - self.assertEqual(6, record.column_number) - self.assertIn('MUTATION_COUNT and FRACTION_GENOME_ALTERED are calculated in cBioPortal', - record.getMessage()) - -class ClinicalValuesTestCase(DataFileTestCase): - - """Tests for validations on the values of clinical attributes.""" - - def test_sample_twice_in_one_file(self): - """Test when a sample is defined twice in the same file.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_clin_repeated_sample.txt', - validateData.SampleClinicalValidator) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.line_number, 11) - self.assertEqual(2, record.column_number) - - def test_tcga_sample_twice_in_one_file(self): - """Test when a TCGA sample is defined twice in the same file.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_repeated_tcga_sample.txt', - validateData.SampleClinicalValidator) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(record.line_number, 11) - self.assertEqual(2, record.column_number) - - def test_sample_with_invalid_characters_in_sample_id(self): - """Test when a invalid characters are found in SAMPLE_ID.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_wrong_ids.txt', - validateData.SampleClinicalValidator) - self.assertEqual(6, len(record_list)) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(6, record.line_number) - self.assertIn('can only contain letters, numbers, points, underscores and/or hyphens', record.getMessage()) - # last one: - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.line_number, 12) - self.assertIn('can only contain letters, numbers, points, underscores and/or hyphens', record.getMessage()) - - - -class PatientAttrFileTestCase(PostClinicalDataFileTestCase): - - """Tests for validation of values specific to patient attribute files.""" - - def test_patient_without_samples(self): - """Test if a warning is issued for patients absent in the sample file.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_patient_without_samples.txt', - validateData.PatientClinicalValidator) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(record.line_number, 10) - self.assertEqual('CASPER', record.cause) - self.assertIn('sample', record.getMessage().lower()) - - def test_patient_without_attributes(self): - """Test if a warning is issued for patients absent in the patient file.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_missing_patient.txt', - validateData.PatientClinicalValidator) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertFalse(hasattr(record, 'line_number'), - 'logrecord is about a specific line') - self.assertEqual('TEST-PAT4', record.cause) - self.assertIn('missing', record.getMessage().lower()) - - def test_hardcoded_attr_values(self): - """Test if attributes with set meanings have recognized values.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_hardcoded_attr_vals.txt', - validateData.PatientClinicalValidator) - self.assertEqual(6, len(record_list)) - record_iterator = iter(record_list) - # OS_STATUS not 0:LIVING - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(6, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('0:ALIVE', record.cause) - # DFS_STATUS having an OS_STATUS value - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(7, record.line_number) - self.assertEqual(5, record.column_number) - self.assertEqual('0:LIVING', record.cause) - # PFS_STATUS not start with 0 / 1 - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(8, record.line_number) - self.assertEqual(7, record.column_number) - self.assertEqual('PROGRESSION', record.cause) - # wrong casing for OS_STATUS - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(9, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('0:living', record.cause) - # DFS_STATUS not 1:Recurred/Progressed - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.line_number, 11) - self.assertEqual(5, record.column_number) - self.assertEqual('1:recurred/progressed', record.cause) - # unspecified OS_MONTHS while OS_STATUS is 1:DECEASED - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(record.line_number, 13) - self.assertIn('OS_MONTHS is not specified for deceased patient. Patient ' - 'will be excluded from survival curve and month of death ' - 'will not be shown on patient view timeline.', - record.getMessage()) - - def test_patient_with_invalid_characters_in_patient_id(self): - """Test when a invalid characters are found in PATIENT_ID.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_clin_wrong_patient_id.txt', - validateData.PatientClinicalValidator) - self.assertEqual(len(record_list), 24) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(6, record.line_number) - self.assertIn('can only contain letters, numbers, points, underscores and/or hyphens', record.getMessage()) - - def test_date_in_nondate_column(self): - """Test when a sample is defined twice in the same file.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_clin_date_in_nondate_column.txt', - validateData.PatientClinicalValidator) - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # First record contains 'Jan-14' - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(8, record.line_number) - self.assertEqual(6, record.column_number) - self.assertEqual('Jan-14', record.cause) - self.assertIn('Date found when no date was expected', record.getMessage()) - # Second record contains '4-Oct' - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(9, record.line_number) - self.assertEqual(6, record.column_number) - self.assertEqual('4-Oct', record.cause) - self.assertIn('Date found when no date was expected', record.getMessage()) - - -class TimelineValuesDataValidationTest(DataFileTestCase): - - """Test values specific to timeline files are appropriately validated.""" - - def test_start_date_validation_TimelineValidator(self): - """timeline validator requires START_DATE in timeline values to - have a non-'NA' value. - """ - - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_timeline_invalid_start_date.txt', - validateData.TimelineValidator) - self.assertEqual(2, len(record_list)) - for error in record_list: - self.assertEqual("ERROR", error.levelname) - self.assertIn("Invalid START_DATE", error.getMessage()) - - -# TODO: make tests in this testcase check the number of properly defined types -class CancerTypeFileValidationTestCase(DataFileTestCase): - - """Tests for validations of cancer type files in a study.""" - - def test_new_cancer_type(self): - """Test when a study defines a new cancer type.""" - # {"id":"luad","name":"Lung Adenocarcinoma","color":"Gainsboro"} - self.logger.setLevel(logging.INFO) - record_list = self.validate('data_cancertype_lung.txt', - validateData.CancerTypeValidator) - # expecting an info message being about a new cancer type being added - self.assertEqual(3, len(record_list)) - record = record_list.pop() - record = record_list.pop() - record = record_list.pop() - self.assertEqual(logging.INFO, record.levelno) - self.assertEqual('luad', record.cause) - self.assertIn('will be added', record.getMessage().lower()) - - def test_cancer_type_missing_column(self): - """Test when a new cancer type file misses a column.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cancertype_missing_color_col.txt', - validateData.CancerTypeValidator) - # expecting an error about the number of columns - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('columns', record.getMessage()) - - def test_cancer_type_missing_value(self): - """Test when a new cancer type has a blank required field.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cancertype_blank_color_col.txt', - validateData.CancerTypeValidator) - # expecting an error about the missing value - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(3, record.column_number) - self.assertIn('blank', record.getMessage().lower()) - - def test_cancer_type_undefined_parent(self): - """Test when a new cancer type's parent cancer type is not known.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cancertype_undefined_parent.txt', - validateData.CancerTypeValidator) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(4, record.column_number) - - def test_cancer_type_invalid_color(self): - """Test error if a cancer type's color is not a web color name.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cancertype_invalid_color.txt', - validateData.CancerTypeValidator) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(3, record.column_number) - - def test_cancer_type_matching_portal(self): - """Test when an existing cancer type is defined exactly as known.""" - record_list = self.validate('data_cancertype_confirming_existing.txt', - validateData.CancerTypeValidator) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_cancer_type_disagreeing_with_portal(self): - """Test when an existing cancer type is redefined by a study.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cancertype_redefining.txt', - validateData.CancerTypeValidator) - # expecting an error message about the cancer type file - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(2, record.column_number) - self.assertEqual('Breast Cancer', record.cause) - - def test_cancer_type_defined_twice(self): - """Test when a study defines the same cancer type id twice. - - No difference is assumed between matching and disagreeing definitions; - this validation just fails as it never makes sense to do this. - """ - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cancertype_lung_twice.txt', - validateData.CancerTypeValidator) - # expecting an error message about the doubly-defined cancer type - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual('luad', record.cause) - self.assertIn('defined a second time', record.getMessage()) - - -class GeneIdColumnsTestCase(PostClinicalDataFileTestCase): - - """Tests validating gene-wise files with different combinations of gene id columns, - now with invalid Entrez ID and/or Hugo names """ - - def test_both_name_and_entrez(self): - """Test when a file has both the Hugo name and Entrez ID columns.""" - record_list = self.validate('data_cna_genecol_presence_both.txt', - validateData.CNADiscreteValidator) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_name_only(self): - """Test when a file has a Hugo name column but none for Entrez IDs.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_hugo_only.txt', - validateData.CNADiscreteValidator) - # expecting 1 warning - self.assertEqual(1, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - - def test_entrez_only(self): - """Test when a file has an Entrez ID column but none for Hugo names.""" - record_list = self.validate('data_cna_genecol_presence_entrez_only.txt', - validateData.CNADiscreteValidator) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_neither_name_nor_entrez(self): - """Test when a file lacks both the Entrez ID and Hugo name columns.""" - record_list = self.validate('data_cna_genecol_presence_neither.txt', - validateData.CNADiscreteValidator) - # two errors after the info: the first makes the file unparsable - self.assertEqual(3, len(record_list)) - for record in record_list[1:]: - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(1, record_list[1].line_number) - - # Tests validating gene-wise files with different combinations of gene id columns, - # now with invalid Entrez ID and/or Hugo names """ - - def test_both_name_and_entrez_but_invalid_hugo(self): - """Test when a file has both the Hugo name and Entrez ID columns, but hugo is invalid.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_both_invalid_hugo.txt', - validateData.CNADiscreteValidator) - # expecting two error messages: - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - # expecting these to be the cause: - self.assertEqual('XXACAP3', record_list[0].cause) - self.assertEqual('XXAGRN', record_list[1].cause) - - def test_both_name_and_entrez_but_hugo_starts_with_integer(self): - """Test when gene symbol is invalid because starts with integer. - - Test when a file has both the Hugo name and Entrez ID columns, but gene symbol is invalid because it starts with - an integer. Also '20MER2', '3.8-1.4' and "5'URS" are added to this dataset, which are some of the few exceptions - that are allowed to start with an integer. This validation step was added to catch unintentional gene conversion - by Excel, for example SEPT9 -> 9-Sep - """ - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_genecol_presence_both_invalid_hugo_integer.txt', - validateData.CNADiscreteValidator, - extra_meta_fields={'meta_file_type': 'CNA_DISCRETE'}) - # expecting two error messages: - self.assertEqual(0, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - # expecting these to be the cause: - #self.assertEqual('1-ACAP3', record_list[0].cause) - #self.assertEqual('9-SEP', record_list[1].cause) - - def test_both_name_and_entrez_but_invalid_entrez(self): - """Test when a file has both the Hugo name and Entrez ID columns, but entrez is invalid.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_both_invalid_entrez.txt', - validateData.CNADiscreteValidator) - # expecting two warning messages: - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - # expecting these to be the cause: - self.assertEqual('999999999', record_list[0].cause) - self.assertEqual('888888888', record_list[1].cause) - - def test_both_name_and_entrez_but_invalid_couple(self): - """Test when a file has both the Hugo name and Entrez ID columns, both valid, but association is invalid.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_both_invalid_couple.txt', - validateData.CNADiscreteValidator) - # expecting two error messages: - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - # expecting these to be the cause: - self.assertIn('ACAP3', record_list[0].cause) - self.assertIn('116983', record_list[1].cause) - - def test_name_only_but_invalid(self): - """Test when a file has a Hugo name column but none for Entrez IDs, and hugo is wrong.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_hugo_only_invalid.txt', - validateData.CNADiscreteValidator) - # expecting two warning messages: - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - # expecting these to be the cause: - self.assertIn('The recommended column Entrez_Gene_Id', record_list[0].message) - self.assertEqual('XXATAD3A', record_list[1].cause) - self.assertEqual('XXATAD3B', record_list[2].cause) - - def test_name_only_but_ambiguous(self): - """Test when a file has a Hugo name column but none for Entrez IDs, and hugo maps to multiple Entrez ids. - This test is also an indirect test of the aliases functionality as this is now the only place - where ambiguity could arise (in gene table Hugo symbol is now unique)""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_hugo_only_ambiguous.txt', - validateData.CNADiscreteValidator) - # expecting one error message - self.assertEqual(2, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - # expecting this gene to be the cause - self.assertEqual('TRAPPC2P1', record.cause) - - def test_entrez_only_but_invalid(self): - """Test when a file has an Entrez ID column but none for Hugo names, and entrez is wrong.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_entrez_only_invalid.txt', - validateData.CNADiscreteValidator) - # expecting two warning messages: - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - # expecting these to be the cause: - self.assertEqual('1073741824', record_list[0].cause) - self.assertEqual('2147483647', record_list[1].cause) - - def test_unambiguous_hugo_also_used_as_alias(self): - """Test referencing a gene by a Hugo symbol occurring as an alias too. - - This should yield a warning, as the gene for which it is an alias - might be the gene intended by the user. - """ - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_genecol_presence_hugo_only_possible_alias.txt', - validateData.CNADiscreteValidator) - # expecting one error message - self.assertEqual(2, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - # expecting this gene to be the cause - self.assertEqual('ACT', record.cause) - - def test_blank_column_heading(self): - """Test whether an error is issued if a column has a blank name.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_blank_heading.txt', - validateData.CNADiscreteValidator) - self.assertEqual(4, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(1, record.line_number) - self.assertEqual(2, record.column_number) - self.assertEqual('', record.cause) - record = next(record_iterator) - self.assertEqual(1, record.line_number) - self.assertEqual(8, record.column_number) - self.assertEqual(' ', record.cause) - record = next(record_iterator) - self.assertIn('white space in sample_id', record.getMessage().lower()) - record = next(record_iterator) - self.assertIn('cannot be parsed', record.getMessage().lower()) - - def test_cytoband_column(self): - """Test that the validator will not fail for a column for Cytoband. This column is default outputted by GISTIC2 - and ignored in the importer.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_cytoband.txt', - validateData.CNADiscreteValidator) - # expecting zero warning messages: - self.assertEqual(0, len(record_list)) - - # TODO - add extra unit tests for the genesaliases scenarios (now only test_name_only_but_ambiguous tests part of this) - - -class FeatureWiseValuesTestCase(PostClinicalDataFileTestCase): - - """Verify that values are being checked in feature/sample matrix files.""" - - def test_valid_discrete_cna(self): - """Check a valid discrete CNA file that should yield no errors.""" - self.logger.setLevel(logging.DEBUG) - record_list = self.validate('data_cna_genecol_presence_both.txt', - validateData.CNADiscreteValidator) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_repeated_gene(self): - """Test if a warning is issued and the line is skipped if duplicate. - - In the test data, the Entrez ID in line 6 is removed. Therefore the gene symbol and gene alias table will be - used to look up this gene in the database. ENTB5 is an alias for Entrez 116983 (ACAP3). This gene was defined - earlier in the file, so the CENTB5 entry will be skipped. There are invalid values in this row, but because the - entry is skipped, the values should not be validated.""" - - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_cna_duplicate_gene.txt', - validateData.CNADiscreteValidator) - # expecting a warning about the duplicate gene, - # but no errors about values - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(6, record.line_number) - self.assertTrue(record.cause.startswith('116983')) - - def test_invalid_discrete_cna(self): - """Check a discrete CNA file with values that should yield errors.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_invalid_values.txt', - validateData.CNADiscreteValidator) - # expecting various errors about data values, about one per line - self.assertEqual(6, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(3, record.line_number) - self.assertEqual(7, record.column_number) - # self.assertEqual(' ', record.cause) if blank cells had a 'cause' - record = next(record_iterator) - self.assertEqual(5, record.line_number) - self.assertEqual(4, record.column_number) - # self.assertEqual('', record.cause) if blank cells had a 'cause' - record = next(record_iterator) - self.assertEqual(6, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('3', record.cause) - record = next(record_iterator) - self.assertEqual(7, record.line_number) - self.assertEqual(6, record.column_number) - self.assertEqual('AURKAIP1', record.cause) - # Only "NA" is supported, anything else should be an error: - record = next(record_iterator) - self.assertEqual(8, record.line_number) - self.assertEqual(5, record.column_number) - self.assertEqual('[Not Available]', record.cause) - # Only -2, -1.5, -1, 0, 1, 2 are supported, anything else should be an error: - record = next(record_iterator) - self.assertEqual(9, record.line_number) - self.assertEqual(6, record.column_number) - self.assertEqual('1.5', record.cause) - - def test_valid_rppa(self): - """Check a valid RPPA file that should yield no errors.""" - self.logger.setLevel(logging.DEBUG) - record_list = self.validate('data_rppa_valid.txt', - validateData.ProteinLevelValidator) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_invalid_rppa(self): - """Check an RPPA file with values that should yield errors.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_rppa_invalid_values.txt', - validateData.ProteinLevelValidator) - # expecting several errors - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(3, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('spam', record.cause) - record = next(record_iterator) - self.assertEqual(6, record.line_number) - self.assertEqual(5, record.column_number) - self.assertEqual('', record.cause) - record = next(record_iterator) - self.assertEqual(9, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual(' ', record.cause) - - def test_repeated_rppa_entry(self): - """Test if a warning is issued and the line is skipped if duplicate.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_rppa_duplicate_entries.txt', - validateData.ProteinLevelValidator) - # expecting only a warning - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(record.line_number, 14) - self.assertTrue(record.cause.startswith('B-Raf')) - - def test_na_gene_in_rppa(self): - """Test if a warning is issued if the gene symbol NA occurs in RPPA.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_rppa_na_gene.txt', - validateData.ProteinLevelValidator) - # expecting only a warning for each NA line - self.assertEqual(9, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - for record, expected_line in zip(record_list, list(range(14, 23))): - self.assertEqual(record.line_number, expected_line) - self.assertEqual(1, record.column_number) - self.assertIn('NA', record.getMessage()) - - def test_gsva_range_gsva_scores(self): - """Test if an error is issued if the score is outside GSVA scoring range""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_gsva_scores_outrange.txt', - validateData.GsvaScoreValidator) - # expecting an error for each line that contains value not within -1 and 1 - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(2, record.line_number) - self.assertEqual(5, record.column_number) - self.assertEqual('1.5', record.cause) - record = next(record_iterator) - self.assertEqual(5, record.line_number) - self.assertEqual(2, record.column_number) - self.assertEqual('2.371393691351566', record.cause) - record = next(record_iterator) - self.assertEqual(7, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('-12', record.cause) - - - def test_range_gsva_pvalues(self): - """Test if an error is issued if the score is outside pvalue range""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_gsva_pvalues_outrange.txt', - validateData.GsvaPvalueValidator) - # expecting an error for each line that contains value not within 0 and 1 - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(4, record.line_number) - self.assertEqual(2, record.column_number) - self.assertEqual('1.5', record.cause) - record = next(record_iterator) - self.assertEqual(6, record.line_number) - self.assertEqual(4, record.column_number) - self.assertEqual('1e3', record.cause) - record = next(record_iterator) - self.assertEqual(8, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('-0.00000000000000005', record.cause) - return - - def test_missing_column_gsva(self): - #Test if an error is issued if the score and pvalue tables do not have same header - self.logger.setLevel(logging.ERROR) - - ### Error should appear when the second file is validated - record_list1 = self.validate('data_gsva_pvalues_missing_column.txt', - validateData.GsvaPvalueValidator) - - record_list2 = self.validate('data_gsva_scores_missing_column.txt', - validateData.GsvaScoreValidator) - self.assertEqual(0, len(record_list1)) - self.assertEqual(2, len(record_list2)) - for record in record_list2: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list2) - record = next(record_iterator) - self.assertEqual(1, record.line_number) - self.assertIn('headers', record.getMessage().lower()) - self.assertIn('different', record.getMessage().lower()) - record = next(record_iterator) - self.assertIn('invalid', record.getMessage().lower()) - self.assertIn('column', record.getMessage().lower()) - return - - def test_missing_row_gsva(self): - #Test if an error is issued if the score and pvalue table does not have same rownames - self.logger.setLevel(logging.ERROR) - - ### Error should appear when the second file is validated - record_list1 = self.validate('data_gsva_pvalues_missing_row.txt', - validateData.GsvaPvalueValidator) - - record_list2 = self.validate('data_gsva_scores_missing_row.txt', - validateData.GsvaScoreValidator) - self.assertEqual(0, len(record_list1)) - self.assertEqual(1, len(record_list2)) - for record in record_list2: - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual("Gene sets column in score and p-value file are not equal. The same set of gene sets should be used in the score and p-value files for this study. Please ensure that all gene set id's of one file are present in the other gene set data file.", record.getMessage()) - return - - -class CNADiscreteLongFormatValidatorTestCase(PostClinicalDataFileTestCase): - def test_all_columns(self): - """ - Test when a file has all compulsory columns (Hugo_Symbol, Entrez_Gene_Id, Sample_Id, Value, cbp_driver, - cbp_driver_annotation, cbp_driver_tiers, and cbp_driver_tiers_annotation). - """ - record_list = self.validate('data_cna_long_genecol_presence_all.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # expecting only status messages about the file being validated - self.assertEqual(5, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_hugo_only(self): - """Test when a file has a Hugo Symbol column but none for Entrez IDs.""" - record_list = self.validate('data_cna_long_genecol_presence_hugo_only.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # expecting only status messages about the file being validated - self.assertEqual(5, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_entrez_only(self): - """Test when a file has an Entrez ID column but none for Hugo names.""" - record_list = self.validate('data_cna_long_genecol_presence_entrez_only.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # expecting only status messages about the file being validated - self.assertEqual(5, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_neither_genic_columns(self): - """Test when a file lacks the Entrez ID and Hugo name columns.""" - record_list = self.validate('data_cna_long_genecol_presence_neither_genic.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # two errors after the info: the first makes the file unparsable - self.assertEqual(3, len(record_list)) - #First message is a debug message - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(record.levelno, logging.DEBUG) - self.assertEqual(record.getMessage(), - 'Starting validation of file') - #Second message is an error - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Hugo_Symbol or Entrez_Gene_Id column needs to be present in the file.') - #Third message is an error - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Invalid column header, file cannot be parsed') - - def test_missing_sample_column(self): - """Test when a file do not have the Sample_Id column.""" - record_list = self.validate('data_cna_long_genecol_no_sample_id.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # two errors after the info: the first makes the file unparsable - self.assertEqual(3, len(record_list)) - #First message is a debug message - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(record.levelno, logging.DEBUG) - self.assertEqual(record.getMessage(), - 'Starting validation of file') - #Second message is an error - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Missing column: Sample_Id') - #Third message is an error - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Invalid column header, file cannot be parsed') - def test_missing_value_column(self): - """Test when a file do not have the Value column.""" - record_list = self.validate('data_cna_long_genecol_no_value.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # two errors after the info: the first makes the file unparsable - self.assertEqual(3, len(record_list)) - #First message is a debug message - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(record.levelno, logging.DEBUG) - self.assertEqual(record.getMessage(), - 'Starting validation of file') - #Second message is an error - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Missing column: Value') - #Third message is an error - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Invalid column header, file cannot be parsed') - - def test_missing_custom_driver_annotation_columns(self): - """Test when a file do not have the custom driver annotation columns.""" - record_list = self.validate('data_cna_long_genecol_no_custom_driver.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_missing_namespace_column(self): - - """Test error is raised when namespace defined, but the corresponding column is not present""" - self.logger.setLevel(logging.INFO) - record_list = self.validate('data_cna_long_genecol_no_namespace.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'Test'}) - self.assertEqual(len(record_list), 2) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'test namespace defined but the file does not have any matching columns') - - def test_valid_discrete_long_cna(self): - """Check a valid discrete CNA Long file that should yield no errors.""" - self.logger.setLevel(logging.DEBUG) - record_list = self.validate('data_cna_long_genecol_presence_all.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # expecting only status messages about the file being validated - self.assertEqual(5, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_duplicated_genes_same_sample(self): - """Test if a errors are issued when two exact genes are mapped to the same sample.""" - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_long_duplicated_gene.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # Expecting 1 error due to a duplicated gene - self.assertEqual(1, len(record_list)) - # The message is an error - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Duplicated gene found within the same sample.') - - def test_two_hugos_same_entrez(self): - """Test if a errors are issued when two Hugo Symbols map to the same Entrez Gene Id. - - In the test data, CENTB5 is introduced in 5 lines without an Entrez Gene Id. CENTB5 is an alias for - Entrez 116983 (ACAP3). Both genes are present 5 times, in 5 different samples. Therefore, we should expect - errors due to two Hugo Symbols mapping to the same Entrez Gene Id.""" - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_long_two_hugos_same_gene.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # Expecting 5 error messages - self.assertEqual(5, len(record_list)) - for record in record_list[1:]: - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.getMessage(), - 'Two different Hugo Symbols that map to the same Entrez Gene Id found within the same sample.') - - def test_one_hugo_same_entrez(self): - """Test if a errors are issued when one Hugo Symbol map to an entry with the same Entrez Gene Id. This - happens 5 times in the file, one per sample.""" - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_long_one_hugo_same_gene.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # Expecting 5 error messages - self.assertEqual(5, len(record_list)) - for record in record_list[1:]: - self.assertEqual(logging.ERROR, record.levelno) - - def test_duplicated_entrez_same_sample(self): - """Test if a errors are issued when two genes with the same Entrez are mapped to the same sample.""" - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_long_duplicated_entrez.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # Expecting 1 error due to a duplicated entrez - self.assertEqual(1, len(record_list)) - # The message is an error - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), - 'Duplicated Entrez Gene Id found within the same sample.') - - def test_invalid_long_discrete_cna(self): - """Check a discrete CNA long file with values that should yield errors.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_cna_long_invalid_values.txt', - validateData.CNADiscreteLongValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - # expecting various errors about data values, about one per line - self.assertEqual(5, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.getMessage(), - 'Invalid CNA value: possible values are [-2, -1.5, -1, 0, 1, 2, NA]') - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(7, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('[Not Available]', record.cause) - record = next(record_iterator) - self.assertEqual(12, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('ATAD3B', record.cause) - record = next(record_iterator) - self.assertEqual(18, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('N/A', record.cause) - record = next(record_iterator) - self.assertEqual(24, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('1.5', record.cause) - record = next(record_iterator) - self.assertEqual(33, record.line_number) - self.assertEqual(3, record.column_number) - self.assertEqual('3', record.cause) - -class MultipleDataFileValidatorTestCase(unittest.TestCase): - - def feature_id_is_accepted(self): - mockval = Mock() - validateData.MultipleDataFileValidator.parseFeatureColumns(mockval, ["id-without_whitespace"]) - mockval.logger.error.assert_not_called() - mockval.logger.warning.assert_not_called() - - def test_illegal_character_in_feature_id_issues_error(self): - mockval = Mock() - validateData.MultipleDataFileValidator.parseFeatureColumns(mockval, ["id with whitespace"]) - mockval.logger.error.assert_called() - - def test_comma_in_feature_id_issues_error(self): - mockval = Mock() - validateData.MultipleDataFileValidator.parseFeatureColumns(mockval, ["id,with-comma"]) - mockval.logger.error.assert_called() - - -class ContinuousValuesTestCase(PostClinicalDataFileTestCase): - - """Verify that values are being checked in feature/sample matrix files with float values.""" - - def test_invalid_methylation(self): - """Check an invalid methylation file that should yield errors.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_methylation_invalid_values.txt', - validateData.ContinuousValuesValidator) - # expecting 3 errors - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual('n.a.', record.cause) - record = next(record_iterator) - self.assertEqual('', record.cause) - record = next(record_iterator) - self.assertEqual('Na', record.cause) - - -class MutationsSpecialCasesTestCase(PostClinicalDataFileTestCase): - - def test_normal_samples_list_in_maf(self): - ''' - For mutations MAF files there is a column called "Matched_Norm_Sample_Barcode". - In the respective meta file it is possible to give a list of sample codes against which this - column "Matched_Norm_Sample_Barcode" is validated. Here we test if this - validation works well. - ''' - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_invalid_norm_samples.maf', - validateData.MutationsExtendedValidator, - {'normal_samples_list': - 'TCGA-BH-A18H-10,' - 'TCGA-B6-A0RS-10,' - '' # TCGA-BH-A0HP-10 - 'TCGA-BH-A18P-11, ' - 'TCGA-C8-A138-10' - 'TCGA-A2-A0EY-10,' - '', # TCGA-A8-A08G-10 - 'swissprot_identifier': 'accession'}) - # we expect 2 errors about invalid normal samples - self.assertEqual(2, len(record_list)) - # check if both messages come from printDataInvalidStatement: - found_one_of_the_expected = False - for error in record_list: - self.assertEqual("ERROR", error.levelname) - self.assertEqual("printDataInvalidStatement", error.funcName) - if error.cause == 'TCGA-BH-A0HP-10': - found_one_of_the_expected = True - self.assertTrue(found_one_of_the_expected) - - def test_missing_aa_change_column(self): - """One of Amino_Acid_Change or HGVSp_Short is required, so - there should be a warning if both Amino_Acid_Change and HGVSp_Short are missing""" - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_missing_aa_change_column.maf', - validateData.MutationsExtendedValidator) - # we expect 2 errors, something like: - # ERROR: data_mutations_missing_aa_change_column.maf: line 1: At least one of the columns HGVSp_Short or Amino_Acid_Change needs to be present. - # ERROR: data_mutations_missing_aa_change_column.maf: Invalid column header, file cannot be parsed - self.assertEqual(2, len(record_list)) - # check if both messages come from printDataInvalidStatement: - self.assertIn("hgvsp_short", record_list[0].getMessage().lower()) - self.assertIn("invalid column header", record_list[1].getMessage().lower()) - - def test_maf_file_checks(self): - """Test errors for MAF file which is not according MAF file checks #6, #10 and #11""" - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - # Test file is a variant on test_output.custom_isoforms.maf from vcf2maf - record_list = self.validate('mutations/data_mutations_test_variant_types.maf', - validateData.MutationsExtendedValidator, None, True, True) - # we expect 11 errors - self.assertEqual(len(record_list), 11) - record_iterator = iter(record_list) - # expect error for bigger start than end position - record = next(record_iterator) - self.assertEqual(2, record.line_number) - self.assertIn('Start_Position should be smaller than or equal to End_Position.', record.getMessage()) - # expect error for not correct start and end position in INS - record = next(record_iterator) - self.assertEqual(2, record.line_number) - self.assertIn('Variant_Type indicates insertion, but difference in Start_Position and End_Position does ' - 'not equal to 1 or the length or the Reference_Allele.', record.getMessage()) - # expect error for incorrect length of reference allele with variant_type INS - record = next(record_iterator) - self.assertEqual(3, record.line_number) - self.assertIn('Variant_Type indicates insertion, but length of Reference_Allele is bigger than the length ' - 'of the Tumor_Seq_Allele1 and/or 2 and therefore indicates deletion.', record.getMessage()) - # expect error for not correct start and end position in DEL - record = next(record_iterator) - self.assertEqual(4, record.line_number) - self.assertIn('Variant_Type indicates deletion, but the difference between Start_Position and End_Position ' - 'are not equal to the length of the Reference_Allele.', record.getMessage()) - # expect error for incorrect length of allele with variant_type DEL - record = next(record_iterator) - self.assertEqual(5, record.line_number) - self.assertIn('Variant_Type indicates deletion, but length of Reference_Allele is smaller than the length ' - 'of Tumor_Seq_Allele1 and/or Tumor_Seq_Allele2, indicating an insertion.', record.getMessage()) - # expect error for incorrect length of allele with variant_type SNP - record = next(record_iterator) - self.assertEqual(6, record.line_number) - self.assertIn('Variant_Type indicates a SNP, but length of Reference_Allele, Tumor_Seq_Allele1 ' - 'and/or Tumor_Seq_Allele2 do not equal 1.', record.getMessage()) - # expect error for incorrect Allele with variant_type SNP - record = next(record_iterator) - self.assertEqual(7, record.line_number) - self.assertIn('Variant_Type indicates a SNP, but Reference_Allele, Tumor_Seq_Allele1 ' - 'and/or Tumor_Seq_Allele2 contain deletion (-).', record.getMessage()) - # expect error for incorrect length of allele with variant_type DNP - record = next(record_iterator) - self.assertEqual(8, record.line_number) - self.assertIn('Variant_Type indicates a DNP, but length of Reference_Allele, Tumor_Seq_Allele1 ' - 'and/or Tumor_Seq_Allele2 do not equal 2.', record.getMessage()) - # expect error for incorrect length of allele with variant_type TNP - record = next(record_iterator) - self.assertEqual(9, record.line_number) - self.assertIn('Variant_Type indicates a TNP, but length of Reference_Allele, Tumor_Seq_Allele1 ' - 'and/or Tumor_Seq_Allele2 do not equal 3.', record.getMessage()) - # expect error for incorrect length of allele with variant_type ONP - record = next(record_iterator) - self.assertEqual(record.line_number, 10) - self.assertIn('Variant_Type indicates a ONP, but length of Reference_Allele, ' - 'Tumor_Seq_Allele1 and 2 are not bigger than 3 or are of unequal lengths.', record.getMessage()) - record = next(record_iterator) - self.assertEqual(record.line_number, 11) - self.assertIn('Allele Based column Reference_Allele contains invalid character.', record.getMessage()) - - def test_special_allele_cases(self): - """Test errors in mutation file which contain special cases of the Allele Based columns""" - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - # Test file is a variant on test_output.custom_isoforms.maf from vcf2maf - record_list = self.validate('mutations/data_mutations_check_special_cases_allele.maf', - validateData.MutationsExtendedValidator, None, True, True) - - # We expect 3 errors - self.assertEqual(3, len(record_list)) - record_iterator = iter(record_list) - # expect error for the same values in Reference_Allele, Tumor_Seq_Allele1 and Tumor_Seq_Allele2 columns - record = next(record_iterator) - self.assertEqual(2, record.line_number) - self.assertIn('All Values in columns Reference_Allele, Tumor_Seq_Allele1 and Tumor_Seq_Allele2 are equal.', - record.getMessage()) - # expect error for deletion, Tumor Seq allele columns do not contain - - # even though the lengths of the sequences are equal - record = next(record_iterator) - self.assertEqual(4, record.line_number) - self.assertIn('Variant_Type indicates a deletion, Allele based columns are the same length, ' - 'but Tumor_Seq_Allele columns do not contain -, indicating a SNP.', record.getMessage()) - # expect error for ONP, lengths of sequences in Reference_Allele, - # Tumor_Seq_Allele1 and Tumor_Seq_Allele2 are not equal - record = next(record_iterator) - self.assertEqual(5, record.line_number) - self.assertIn('Variant_Type indicates a ONP, but length of Reference_Allele, ' - 'Tumor_Seq_Allele1 and 2 are not bigger than 3 or are of unequal lengths.', record.getMessage()) - - def test_validation_status_MAF_checks(self): - """Test errors for MAF file which is not according MAF file checks #7, #8, #9 and #13""" - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - # Test file is a variant on mutation file from study_es_0 - record_list = self.validate('mutations/data_mutations_validation_status.maf', - validateData.MutationsExtendedValidator, None, True, True) - - # We expect 6 errors - self.assertEqual(6, len(record_list)) - record_iterator = iter(record_list) - # expect error for empty validation allele columns - record = next(record_iterator) - self.assertEqual(2, record.line_number) - self.assertIn('Validation Status is valid, but Validation Allele columns are empty.', record.getMessage()) - # expect error for invalid character in allele based column - record = next(record_iterator) - self.assertEqual(3, record.line_number) - self.assertIn('At least one of the Validation Allele Based columns (Tumor_Validation_Allele1, ' - 'Tumor_Validation_Allele2, Match_Norm_Validation_Allele1, Match_Norm_Validation_Allele2) ' - 'contains invalid character.', record.getMessage()) - # expect error for not equal tumor and normal allele columns when Validation_Status is invalid - record = next(record_iterator) - self.assertEqual(4, record.line_number) - self.assertIn('When Validation_Status is invalid the Tumor_Validation_Allele and Match_Norm_' - 'Validation_Allele columns should be equal.', record.getMessage()) - # expect error for undefined Validation_Method when Validation_Status is valid or invalid - record = next(record_iterator) - self.assertEqual(5, record.line_number) - self.assertIn('Validation Status is invalid, but Validation_Method is not defined.', record.getMessage()) - # expect error for incorrect Validation Allele Columns when Mutation_Status is Germline - record = next(record_iterator) - self.assertEqual(6, record.line_number) - self.assertIn('When Validation_Status is valid and Mutation_Status is Germline, the Tumor_Validation_Allele ' - 'should be equal to the Match_Norm_Validation_Allele.', record.getMessage()) - # expect error for incorrect Validation Allele Columns when Mutation_Status is Germline - record = next(record_iterator) - self.assertEqual(7, record.line_number) - self.assertIn('When Validation_Status is valid and Mutation_Status is Somatic, the Match_Norm_Validation_Allele' - ' columns should be equal to the Reference Allele and one of the Tumor_Validation_Allele columns' - ' should not be.', record.getMessage()) - - def test_warning_for_missing_SWISSPROT(self): - """If SWISSPROT is missing (or present and empty), user should be warned about it""" - # set level according to this test case: - self.logger.setLevel(logging.WARNING) - record_list = self.validate('mutations/data_mutations_missing_swissprot.maf', - validateData.MutationsExtendedValidator) - # we expect 1 warning, something like - # WARNING: data_mutations_missing_swissprot.maf: line 1: SWISSPROT column is recommended if you want to make sure that a specific isoform is used for the PFAM domains drawing in the mutations view.; wrong value: 'SWISSPROT column not found' - self.assertEqual(1, len(record_list)) - # check if both messages come from printDataInvalidStatement: - self.assertIn("swissprot column is recommended", - record_list[0].getMessage().lower()) - - def test_unknown_or_invalid_swissprot(self): - """Test warnings for invalid and unknown accessions under SWISSPROT.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'mutations/data_mutations_invalid_swissprot.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'accession'}) - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # used a name instead of an accession - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(3, record.line_number) - self.assertEqual('A1CF_HUMAN', record.cause) - self.assertNotIn('portal', record.getMessage().lower()) - # neither a name nor an accession - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(5, record.line_number) - self.assertEqual('P99999,Z9ZZZ9ZZZ9', record.cause) - self.assertNotIn('portal', record.getMessage().lower()) - - def test_name_as_swissprot_identifier(self): - """Test if the SWISSPROT column is parsed as a name if meta says so.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'mutations/data_mutations_name_swissprot.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'name'}) - # the same errors as in test_implicit_name_as_swissprot_identifier() - self.assert_swissprotname_validated(record_list) - - def test_implicit_name_as_swissprot_identifier(self): - """Test if the SWISSPROT column is parsed as a name if unspecified.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'mutations/data_mutations_name_swissprot.maf', - validateData.MutationsExtendedValidator) - # warning about the implicit Swiss-Prot identifier type - record = record_list[0] - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('swissprot_identifier', record.getMessage()) - # the same errors as in test_name_as_swissprot_identifier() - self.assert_swissprotname_validated(record_list[1:]) - - def assert_swissprotname_validated(self, record_list): - """Assert names are validated in data_mutations_name_swissprot.maf.""" - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # used an accession instead of a name - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(3, record.line_number) - self.assertEqual('Q9NQ94', record.cause) - self.assertNotIn('portal', record.getMessage().lower()) - # neither a name nor an accession - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(5, record.line_number) - self.assertEqual('A1CF_HUMAN,HBB_YEAST', record.cause) - self.assertNotIn('portal', record.getMessage().lower()) - - def test_invalid_swissprot_identifier_type(self): - """Test if the validator rejects files with nonsensical id types.""" - self.logger.setLevel(logging.ERROR) - meta_dictionary = validateData.cbioportal_common.parse_metadata_file( - 'test_data/mutations/meta_mutations_invalid_swissprot_idspec.txt', - self.logger, - study_id='spam') - record_list = self.get_log_records() - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual('namelessly', record.cause) - self.assertIsNone(meta_dictionary['meta_file_type'], 'metadata file was not rejected as invalid') - - def test_isValidAminoAcidChange(self): - """Test if proper warnings are given for wrong/blank AA change vals.""" - # set level according to this test case: - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'mutations/data_mutations_wrong_aa_change.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'accession'}) - self.assertEqual(5, len(record_list)) - record_iterator = iter(record_list) - # empty field (and no HGVSp_Short column) - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('Amino_Acid_Change', record.getMessage()) - self.assertIn('HGVSp_Short', record.getMessage()) - self.assertEqual(2, record.line_number) - # multiple specifications - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('p.', record.getMessage()) - self.assertEqual('p.A195V;p.I167I', record.cause) - # comma in the string - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('comma', record.getMessage().lower()) - self.assertEqual('p.N851,Y1055delinsCC', record.cause) - # haplotype specification of multiple mutations - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('allele', record.getMessage().lower()) - self.assertEqual('p.[N851N];[Y1055C]', record.cause) - # NULL (and no HGVSp_Short column) - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('Amino_Acid_Change', record.getMessage()) - self.assertIn('HGVSp_Short', record.getMessage()) - self.assertEqual(8, record.line_number) - - def throw_error_if_hgvsp_short_is_too_long(self): - """Test that an error is thrown if HGVSp_Short value is too long.""" - # set level according to this test case: - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'mutations/data_mutations_too_long_hgvsp_short.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'accession'}) - self.assertEqual(1, len(record_list)) - record_iterator = iter(record_list) - # expect an error for the second entry, first one should not throw any message - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('HGVSp_Short', record.getMessage()) - self.assertEqual(2, record.line_number) - - def test_isValidVariantClassification(self): - """Test if proper warnings/errors are given for wrong/blank Variant_Classification change vals.""" - # set level according to this test case: - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'mutations/data_mutations_invalid_variant_classification.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'name'}) - # we expect 1 warning and 1 error: - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # first is a warning about wrong value: - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('not one of the expected values', record.getMessage()) - # second is an error about empty value (not allowed): - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('is invalid', record.getMessage()) - - def test_silent_mutation_skipped(self): - """Test if silent mutations are skipped with a message. - - Silent mutations being ones that have no direct effect on amino acid - sequence, which is predicted in the Variant_Classification column. - """ - # set level according to this test case: - self.logger.setLevel(logging.INFO) - record_list = self.validate('mutations/data_mutations_some_silent.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 5 infos: 3 about silent mutations, 2 general info messages: - self.assertEqual(5, len(record_list)) - # First 3 INFO messages should be something like: "Validation of line skipped due to cBioPortal's filtering. Filtered types:" - for record in record_list[:3]: - self.assertIn("filtered types", record.getMessage().lower()) - - - def test_alternative_notation_for_intergenic_mutation(self): - """Test alternative 'notation' for intergenic mutations. - - The MAF specification documents the use of the 'gene' Unknown / 0 for - intergenic mutations, and since the Variant_Classification column is - often invalid, cBioPortal assumes it to mean that and skips it. - (even if the Entrez column is absent). - Here we test whether the 'gene' Unknown / 0 records are skipped - with a warning when Variant_Classification!='IGR' - """ - # set level according to this test case: - self.logger.setLevel(logging.INFO) - record_list = self.validate('mutations/data_mutations_silent_alternative.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 1 ERROR, 2 WARNINGs and 5 INFO: - self.assertEqual(8, len(record_list)) - - # ERROR should be something like: "No Entrez id or gene symbol provided for gene" - self.assertIn("no entrez gene id or gene symbol provided", record_list[1].getMessage().lower()) - self.assertEqual(logging.ERROR, record_list[1].levelno) - # WARNING should be something like: "Gene specification for this mutation implies intergenic..." - self.assertIn("implies intergenic", record_list[2].getMessage().lower()) - self.assertEqual(logging.WARNING, record_list[2].levelno) - self.assertIn("implies intergenic", record_list[3].getMessage().lower()) - self.assertEqual(logging.WARNING, record_list[3].levelno) - # INFO should be: "this variant (gene symbol 'unknown', entrez gene id 0) will be filtered out" - self.assertIn("this variant (gene symbol 'unknown', entrez gene id 0) will be filtered out", record_list[4].getMessage().lower()) - self.assertEqual(logging.INFO, record_list[4].levelno) - - def test_customized_variants_skipped(self): - - """Test if customized mutations are skipped with a message.""" - # set level according to this test case: - self.logger.setLevel(logging.INFO) - old_variant_types = validateData.MutationsExtendedValidator.SKIP_VARIANT_TYPES - validateData.MutationsExtendedValidator.SKIP_VARIANT_TYPES = ["5'Flank", "Frame_Shift_Del", "Frame_Shift_Ins"] - record_list = self.validate('mutations/data_mutations_some_silent.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 6 infos: 4 about filtered mutations, 2 general info messages: - self.assertEqual(6, len(record_list)) - # First 3 INFO messages should be something like: "Line will not be loaded due to the variant classification filter. Filtered types:" - for record in record_list[:4]: - self.assertIn("filtered types", record.getMessage().lower()) - - # restore the default skipped variant types - validateData.MutationsExtendedValidator.SKIP_VARIANT_TYPES = old_variant_types - - def test_isValidGenePosition(self): - """Test if proper warnings/errors are given for wrong/blank gene positions - (Start_Position and End_Position) change vals.""" - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate( - 'mutations/data_mutations_wrong_gene_position.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'name'}) - # we expect 2 errors: - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # first is an error about wrong value in Start_Position: - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('The start position of this variant is not ' - 'an integer', record.getMessage()) - # second is an error about wrong value in End_Position: - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('The end position of this variant is not ' - 'an integer', record.getMessage()) - - def test_absence_custom_values_columns_when_custom_annotation_columns(self): - """Test that the validator raises an error when the - cbp_driver_annotation and the cbp_driver_tiers_annotation - columns are present but the cbp_driver and the - cbp_driver_tiers columns are not. - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_absence_custom_values_columns_when_custom_annotation_columns.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 5 ERRORs : - self.assertEqual(3, len(record_list)) - - # First 2 ERRORs should be something like: "Column X found without any X column" - self.assertIn("Column cbp_driver_annotation found without any cbp_driver column.", record_list[0].getMessage()) - self.assertEqual(logging.ERROR, record_list[0].levelno) - self.assertIn("Column cbp_driver_tiers_annotation found without any cbp_driver_tiers column.", record_list[1].getMessage()) - self.assertEqual(logging.ERROR, record_list[1].levelno) - - def test_absence_custom_annotation_columns_when_custom_values_columns(self): - """Test that the validator raises an error when the - cbp_driver and the cbp_driver_tiers columns are present - but the cbp_driver_annotation and the - cbp_driver_tiers_annotation columns are not. - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_absence_custom_annotation_columns_when_custom_values_columns.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 5 ERRORs : - self.assertEqual(3, len(record_list)) - - # First 2 ERRORs should be something like: "Column X found without any Y column" - self.assertIn('Column cbp_driver found without any cbp_driver_annotation column.', record_list[0].getMessage()) - self.assertEqual(logging.ERROR, record_list[0].levelno) - self.assertIn('Column cbp_driver_tiers found without any cbp_driver_tiers_annotation column.', record_list[1].getMessage()) - self.assertEqual(logging.ERROR, record_list[1].levelno) - - def test_empty_custom_annotation_fields(self): - """Test that the validator raises errors when one multiclass - column is empty and the other is full, and that the binary - annotation column is full when the binary label column contains - "Putative_Driver" or "Putative_Passenger". - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_empty_custom_annotation_fields.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - self.assertEqual(1, len(record_list)) - record = record_list[0] - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('This line has no value for cbp_driver_tiers and a value for cbp_driver_tiers_annotation. Please, fill the cbp_driver_tiers column.', record.getMessage()) - - def test_warning_more_than_10_types_in_driver_class(self): - """Test that the validator raises a warning when the column - cbp_driver_tiers contains more than 10 types. - """ - # set level according to this test case: - self.logger.setLevel(logging.WARNING) - record_list = self.validate('mutations/data_mutations_more_than_10_types_in_driver_class.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 3 WARNINGs : - self.assertEqual(3, len(record_list)) - - # WARNINGs should be something like: "cbp_driver_tiers contains more than 10 different values" - self.assertIn("cbp_driver_tiers contains more than 10 different tiers.", record_list[0].getMessage().lower()) - self.assertEqual(logging.WARNING, record_list[0].levelno) - self.assertIn("cbp_driver_tiers contains more than 10 different tiers.", record_list[1].getMessage().lower()) - self.assertEqual(logging.WARNING, record_list[1].levelno) - self.assertIn("cbp_driver_tiers contains more than 10 different tiers.", record_list[2].getMessage().lower()) - self.assertEqual(logging.WARNING, record_list[2].levelno) - - def test_annotation_more_than_80_characters_in_custom_annotation_columns(self): - """Test if the validator raises an error if any value of the annotation - columns has more than 80 characters. - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_more_than_80_characters_in_custom_annotation_columns.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 1 ERROR : - self.assertEqual(1, len(record_list)) - - # ERROR should be something like: "cbp_driver_annotation and cbp_driver_tiers_annotation columns do not support annotations longer than 80 characters" - self.assertIn("columns do not support annotations longer than 80 characters", record_list[0].getMessage().lower()) - self.assertEqual(logging.ERROR, record_list[0].levelno) - - def test_not_supported_custom_driver_annotation_values(self): - """Test if the validator raises an error if any value of the - cbp_driver is not Putative_Passenger or - Putative_Driver. - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_not_supported_custom_driver_annotation_values.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 1 ERROR : - self.assertEqual(1, len(record_list)) - - # ERROR should be something like: "Only "Putative_Passenger", "Putative_Driver", "NA", "Unknown" and "" (empty) are allowed." - self.assertIn('only "putative_passenger", "putative_driver", "na", "unknown" and "" (empty) are allowed.', record_list[0].getMessage().lower()) - self.assertEqual(logging.ERROR, record_list[0].levelno) - - def test_custom_driver_column_more_than_50_characters(self): - """Test if the validator raises an error if any value of the - cbp_driver_tiers column has more than 50 characters. - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_custom_tiers_column_more_than_50_characters.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={ - 'swissprot_identifier': 'name'}) - # we expect 1 ERROR : - self.assertEqual(1, len(record_list)) - - # ERROR should be something like: "cbp_driver_tiers column does not support values longer than 50 characters" - self.assertIn("does not support values longer than 50 characters", record_list[0].getMessage().lower()) - self.assertEqual(logging.ERROR, record_list[0].levelno) - - def test_validation_verification_status(self): - - """Assert names are validated in data_mutations_vs.maf.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('mutations/data_mutations_vs.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'name'}) - - # we expect 2 errors: - self.assertEqual(2, len(record_list)) - - record_iterator = iter(record_list) - # Validation Status error - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(2, record.line_number) - self.assertEqual('---', record.cause) - self.assertEqual("Value in 'Validation_Status' not in MAF format", record.getMessage()) - # Verification status error - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(3, record.line_number) - self.assertEqual('Test', record.cause) - self.assertEqual("Value in 'Verification_Status' not in MAF format", record.getMessage()) - - def test_validation_ms(self): - - """Test if warning is given when Mutation_Status column in mutation - file contains other than allowed values from MAF format or Wildtype.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('mutations/data_mutations_ms.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'name'}) - # we expect 1 warning - self.assertEqual(1, len(record_list)) - - # Check warning message - self.assertEqual(logging.WARNING, record_list[0].levelno) - self.assertEqual(2, record_list[0].line_number) - self.assertEqual('test', record_list[0].cause) - self.assertEqual("Mutation_Status value is not in MAF format", record_list[0].getMessage()) - - def test_mutation_not_loaded_ms(self): - - """Test if info message is given when Mutation_Status columns have either - LOH, None or Wildtype. In these cases the mutation is not loaded in cBioPortal.""" - self.logger.setLevel(logging.INFO) - record_list = self.validate('mutations/data_mutations_not_loaded_ms.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'name'}) - - # We expect 5 info messages, 3 from not loaded mutations and 2 general lines - self.assertEqual(5, len(record_list)) - record_iterator = iter(record_list) - # Expected info message due to value "None" in Mutation_Status - record = next(record_iterator) - self.assertEqual(logging.INFO, record.levelno) - self.assertEqual(3, record.line_number) - self.assertEqual('None', record.cause) - self.assertEqual("Mutation will not be loaded due to value in Mutation_Status", record.getMessage()) - # Expected info message due to value "loh" in Mutation_Status - record = next(record_iterator) - self.assertEqual(logging.INFO, record.levelno) - self.assertEqual(5, record.line_number) - self.assertEqual('loh', record.cause) - self.assertEqual("Mutation will not be loaded due to value in Mutation_Status", record.getMessage()) - # Expected info message due to value "Wildtype" in Mutation_Status - record = next(record_iterator) - self.assertEqual(logging.INFO, record.levelno) - self.assertEqual(9, record.line_number) - self.assertEqual('Wildtype', record.cause) - self.assertEqual("Mutation will not be loaded due to value in Mutation_Status", record.getMessage()) - - def test_mutation_invalid_utf8(self): - """Test that the validator raises an error when a data file contains invalid UTF-8 bytes". - """ - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('mutations/data_mutations_invalid_utf8.maf', - validateData.MutationsExtendedValidator) - # we expect 1 ERROR: - self.assertEqual(1, len(record_list)) - - # The ERROR should be: "UTF-8 codec can't decode byte" - self.assertIn("File contains invalid UTF-8 bytes. Please check values in file", record_list[0].getMessage()) - self.assertEqual(logging.ERROR, record_list[0].levelno) - - def test_zygosity_column_enforced_with_namespace_defined(self): - - """Test error is raised when namespace defined, but the corresponding column is not present""" - self.logger.setLevel(logging.INFO) - record_list = self.validate('mutations/data_mutations_missing_zygosity_status_column.maf', - validateData.MutationsExtendedValidator, - extra_meta_fields={'swissprot_identifier': 'name', - 'namespaces': 'ZYGOSITY'}) - self.assertEqual(len(record_list), 3) - print(record_list) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(record.levelno, logging.ERROR) - self.assertEqual(record.getMessage(), 'Namespace defined but MAF is missing required column.') - -class StructuralVariantValidationTestCase(PostClinicalDataFileTestCase): - """Tests for the various validations of data in structural variant data files.""" - - def test_missing_columns(self): - """Test whether the required fields are present""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_structural_variants_missing_columns.txt', - validateData.StructuralVariantValidator, - extra_meta_fields={'namespaces': 'MyNamespace'}) - self.assertEqual(4, len(record_list)) - record_iterator = iter(record_list) - - # Expected ERROR message due to missing SV_Status column - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(1, record.line_number) - self.assertEqual('Missing column: SV_Status', record.message) - - # Expected ERROR message due to no columns having the namespace defined in the meta file - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual('mynamespace namespace defined but the file does not have any matching columns', - record.message) - - # Expected ERROR message due to missing Entrez gene id and Hugo symbol column - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(1, record.line_number) - self.assertEqual('Structural variant event requires Site2_Entrez_Gene_Id and/or Site2_Hugo_Symbol ' - 'column', record.message) - - # Expected generic ERROR message due to invalid column header - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual('Invalid column header, file cannot be parsed', record.message) - - def test_missing_values(self): - """Test whether the entrez gene id and hugo symbols are found in both the sites""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_structural_variants_missing_values.txt', - validateData.StructuralVariantValidator) - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - - # Expected ERROR message due to missing Entrez gene id and/or gene symbol at site 1 and site 2 - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(3, record.line_number) - self.assertIn("No Entrez gene id or gene symbol provided for site 1 and site 2", record.message) - - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(8, record.line_number) - self.assertIn("No Entrez gene id or gene symbol provided for site 1 and site 2", record.message) - - def test_duplicate_line(self): - """Test if duplicate lines are detected""" - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_structural_variants_duplicate_entry.txt', - validateData.StructuralVariantValidator) - - self.assertEqual(1, len(record_list)) - self.assertIn("duplicate entry in structural variant data", record_list[0].getMessage().lower()) - -class SegFileValidationTestCase(PostClinicalDataFileTestCase): - - """Tests for the various validations of data in segment CNA data files.""" - - @classmethod - def setUpClass(cls): - """Override a static method to skip a UCSC HTTP query in each test.""" - super(SegFileValidationTestCase, cls).setUpClass() - @staticmethod - def load_chromosome_lengths(genome_build, _): - if genome_build == 'hg19': - return {'1': 249250621, '10': 135534747, '11': 135006516, - '12': 133851895, '13': 115169878, '14': 107349540, - '15': 102531392, '16': 90354753, '17': 81195210, - '18': 78077248, '19': 59128983, '2': 243199373, - '20': 63025520, '21': 48129895, '22': 51304566, - '3': 198022430, '4': 191154276, '5': 180915260, - '6': 171115067, '7': 159138663, '8': 146364022, - '9': 141213431, 'X': 155270560, 'Y': 59373566} - else: - raise ValueError( - "load_chromosome_lengths() called with genome build '{}'".format( - genome_build)) - cls.orig_chromlength_method = validateData.SegValidator.load_chromosome_lengths - validateData.SegValidator.load_chromosome_lengths = load_chromosome_lengths - - @classmethod - def tearDownClass(cls): - """Restore the environment to before setUpClass() was called.""" - validateData.SegValidator.load_chromosome_lengths = cls.orig_chromlength_method - super(SegFileValidationTestCase, cls).tearDownClass() - - def test_valid_seg(self): - """Validate a segment file without file format errors.""" - record_list = self.validate('data_seg_valid.seg', - validateData.SegValidator, - extra_meta_fields={'reference_genome_id': - 'hg19'}) - # expecting only status messages about the file being validated - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_invalid_ref_genome_hg18(self): - """Test validation of a segment file which has hg18 data but is submitted as hg19""" - self.logger.setLevel(logging.ERROR) - - # The input file contains a genomic position from hg18 (chr19, 63811651) - record_list = self.validate('data_seg_invalid_hg18.seg', - validateData.SegValidator, - extra_meta_fields={'reference_genome_id': - 'hg19'}) - # Expect 1 error - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertLessEqual(record.levelno, logging.ERROR) - self.assertEqual('63811651', record.cause) - self.assertEqual('Genomic position beyond end of chromosome (chr19:0-59128983)', record.message) - - def test_unparsable_seg_columns(self): - """Validate .seg files with non-numeric values and an unsupported chromosome.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_seg_nonsense_values.seg', - validateData.SegValidator, - extra_meta_fields={'reference_genome_id': - 'hg19'}) - self.assertEqual(3, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.line_number, 28) - # unknown chromosome - self.assertEqual(2, record_list[0].column_number) - # non-integral start position - self.assertEqual(3, record_list[1].column_number) - # non-rational mean copy number - self.assertEqual(6, record_list[2].column_number) - - def test_negative_length_segment(self): - """Validate a .seg where a start position is no higher than its end.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_seg_end_before_start.seg', - validateData.SegValidator, - extra_meta_fields={'reference_genome_id': - 'hg19'}) - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # negative-length segment - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.line_number, 11) - # zero-length segment - record = next(record_iterator) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(record.line_number, 31) - - def test_out_of_bounds_coordinates(self): - """Validate .seg files with regions spanning outside of the chromosome.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_seg_out_of_bounds.seg', - validateData.SegValidator, - extra_meta_fields={'reference_genome_id': - 'hg19'}) - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - # start position before start of chromosome - self.assertEqual(record_list[0].line_number, 36) - self.assertEqual(3, record_list[0].column_number) - # end position after end of chromosome - self.assertEqual(record_list[1].line_number, 41) - self.assertEqual(4, record_list[1].column_number) - - def test_blank_line(self): - """Validate a .seg with a blank data line.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_seg_blank_line.seg', - validateData.SegValidator, - extra_meta_fields={'reference_genome_id': - 'hg19'}) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertEqual(record.line_number, 35) - self.assertIn('blank', record.getMessage().lower()) - - -class GisticGenesValidationTestCase(PostClinicalDataFileTestCase): - - """Tests for validations of data in aggregated GISTIC genes files. - - See validateData.GisticGenesValidator for more information. - """ - - def test_valid_amp_file(self): - """Test validation of an amp file that should yield no warnings.""" - self.logger.setLevel(logging.DEBUG) - record_list = self.validate( - 'data_gisticgenes_amp_valid.txt', - validateData.GisticGenesValidator, - extra_meta_fields={ - 'genetic_alteration_type': 'GISTIC_GENES_AMP', - 'reference_genome_id': 'hg19'}) - # expecting only status messages about the file being validated - self.assertEqual(4, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_valid_del_file(self): - """Test validation of a del file that should yield no warnings.""" - self.logger.setLevel(logging.DEBUG) - record_list = self.validate( - 'data_gisticgenes_del_valid.txt', - validateData.GisticGenesValidator, - extra_meta_fields={ - 'genetic_alteration_type': 'GISTIC_GENES_DEL', - 'reference_genome_id': 'hg19'}) - # expecting only status messages about the file being validated - self.assertEqual(4, len(record_list)) - for record in record_list: - self.assertLessEqual(record.levelno, logging.INFO) - - def test_region_without_genes(self): - """Test validation of regions with no genes.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'data_gisticgenes_del_region_without_genes.txt', - validateData.GisticGenesValidator, - extra_meta_fields={ - 'genetic_alteration_type': 'GISTIC_GENES_DEL', - 'reference_genome_id': 'hg19'}) - # expecting warnings about the empty gene lists on two lines - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(5, record.column_number) - self.assertEqual(4, record_list[0].line_number) - self.assertEqual(5, record_list[1].line_number) - - def test_zero_length_peak(self): - """Test validation of a zero-bases-short peak.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'data_gisticgenes_del_zero_length_peak.txt', - validateData.GisticGenesValidator, - extra_meta_fields={ - 'genetic_alteration_type': 'GISTIC_GENES_DEL', - 'reference_genome_id': 'hg19'}) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual(5, record.line_number) - self.assertIn('242476062', record.cause) - - def test_format_errors(self): - """Test validation of a file with genome-unspecific errors.""" - self.logger.setLevel(logging.WARNING) - record_list = self.validate( - 'data_gisticgenes_del_format_errors.txt', - validateData.GisticGenesValidator, - extra_meta_fields={ - 'genetic_alteration_type': 'GISTIC_GENES_DEL', - 'reference_genome_id': 'hg19'}) - # expecting various errors, about two per line - self.assertEqual(9, len(record_list)) - for record in record_list[:8]: - self.assertEqual(logging.ERROR, record.levelno) - record_iterator = iter(record_list) - # invalid 'amp' value - record = next(record_iterator) - self.assertEqual(2, record.line_number) - self.assertEqual(6, record.column_number) - # mismatch between chromosome number in chromosome and cytoband cols - record = next(record_iterator) - self.assertEqual(2, record.line_number) - self.assertEqual('(1p36.13, 2)', record.cause) - # q-value not a real number - record = next(record_iterator) - self.assertEqual(3, record.line_number) - self.assertEqual(8, record.column_number) - # reversed start and end positions - record = next(record_iterator) - self.assertEqual(3, record.line_number) - self.assertIn('not lower', record.getMessage()) - # incorrect 'amp' value - record = next(record_iterator) - self.assertEqual(4, record.line_number) - self.assertEqual(6, record.column_number) - # no p or q in cytoband - record = next(record_iterator) - self.assertEqual(4, record.line_number) - self.assertEqual(7, record.column_number) - # missing chromosome - record = next(record_iterator) - self.assertEqual(5, record.line_number) - self.assertEqual(2, record.column_number) - # missing chromosome in cytoband - record = next(record_iterator) - self.assertEqual(5, record.line_number) - self.assertEqual(7, record.column_number) - # blank gene in list - record = next(record_iterator) - self.assertEqual(6, record.line_number) - self.assertEqual(logging.WARNING, record.levelno) - self.assertEqual('', record.cause) - -class GenePanelMatrixValidationTestCase(PostClinicalDataFileTestCase): - - """Test for validations in Gene Panel Matrix.""" - - def test_duplicate_sample(self): - """Test if duplicate samples are detected""" - # set level according to this test case: - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_gene_matrix_duplicate_sample.txt', - validateData.GenePanelMatrixValidator) - - self.assertEqual(1, len(record_list)) - self.assertIn("duplicated sample id.", record_list[0].getMessage().lower()) - -class StudyCompositionTestCase(LogBufferTestCase): - - """Tests for validations of the number of files of certain types.""" - - def setUp(self): - """Store validateData globals changed by running validate_study().""" - super(StudyCompositionTestCase, self).setUp() - self.orig_defined_cancer_types = validateData.DEFINED_CANCER_TYPES - self.orig_defined_sample_ids = validateData.DEFINED_SAMPLE_IDS - - def tearDown(self): - """Restore the environment to before setUp() was called.""" - validateData.DEFINED_CANCER_TYPES = self.orig_defined_cancer_types - validateData.DEFINED_SAMPLE_IDS = self.orig_defined_sample_ids - super(StudyCompositionTestCase, self).tearDown() - - # TODO test whether proper metadata files generate only INFO and DEBUG messages - - def test_double_cancer_type_file(self): - """Check behavior when two cancer type files are supplied.""" - self.logger.setLevel(logging.ERROR) - validateData.validate_study( - 'test_data/study_cancertype_two_files', - PORTAL_INSTANCE, - self.logger, False, False) - record_list = self.get_log_records() - # expecting two errors: one about the two cancer type files, and - # about the cancer type of the study not having been defined - self.assertEqual(2, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - # compare filenames mentioned in the 1st error independent of ordering - filenames_in_cause_string = set(record_list[0].cause.split(', ', 1)) - self.assertEqual(filenames_in_cause_string, - {'cancer_type_luad.txt', 'cancer_type_lung.txt'}) - # assert that the second error complains about the cancer type - self.assertEqual('luad', record_list[1].cause) - - def test_invalid_tags_file(self): - """Test if an error is reported when giving a study tags file with wrong format.""" - with temp_inputfolder({ - 'meta_study.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - type_of_cancer: brca - name: Spam (spam) - description: Baked beans - add_global_case_list: true - tags_file: study_tags.yml - '''), - 'meta_samples.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - genetic_alteration_type: CLINICAL - datatype: SAMPLE_ATTRIBUTES - data_filename: data_samples.txt - '''), - 'data_samples.txt': textwrap.dedent('''\ - #Patient Identifier\tSample Identifier - #PatID\tSampId - #STRING\tSTRING - #1\t1 - PATIENT_ID\tSAMPLE_ID - Patient1\tPatient1-Sample1 - '''), - 'study_tags.yml': textwrap.dedent('''\ - Invalid: - { - ''') - }) as study_dir: - self.logger.setLevel(logging.WARNING) - validateData.validate_study( - study_dir, - PORTAL_INSTANCE, - self.logger, - relaxed_mode=False, - strict_maf_checks=False) - record_list = self.get_log_records() - self.assertEqual(1, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('yaml', record.getMessage().lower()) - - def test_valid_JSON_tags_file(self): - """Test if no errors are reported when giving a study tags file in JSON format.""" - with temp_inputfolder({ - 'meta_study.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - type_of_cancer: brca - name: Spam (spam) - description: Baked beans - add_global_case_list: true - tags_file: study_tags.yml - '''), - 'meta_samples.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - genetic_alteration_type: CLINICAL - datatype: SAMPLE_ATTRIBUTES - data_filename: data_samples.txt - '''), - 'data_samples.txt': textwrap.dedent('''\ - #Patient Identifier\tSample Identifier - #PatID\tSampId - #STRING\tSTRING - #1\t1 - PATIENT_ID\tSAMPLE_ID - Patient1\tPatient1-Sample1 - '''), - 'study_tags.yml': textwrap.dedent('''\ - { name: study_name } - ''') - }) as study_dir: - self.logger.setLevel(logging.WARNING) - validateData.validate_study( - study_dir, - PORTAL_INSTANCE, - self.logger, - relaxed_mode=False, - strict_maf_checks=False) - record_list = self.get_log_records() - self.assertEqual(0, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - - def test_valid_YAML_tags_file(self): - """Test if no errors are reported when giving a study tags file in YAML format.""" - with temp_inputfolder({ - 'meta_study.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - type_of_cancer: brca - name: Spam (spam) - description: Baked beans - add_global_case_list: true - tags_file: study_tags.yml - '''), - 'meta_samples.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - genetic_alteration_type: CLINICAL - datatype: SAMPLE_ATTRIBUTES - data_filename: data_samples.txt - '''), - 'data_samples.txt': textwrap.dedent('''\ - #Patient Identifier\tSample Identifier - #PatID\tSampId - #STRING\tSTRING - #1\t1 - PATIENT_ID\tSAMPLE_ID - Patient1\tPatient1-Sample1 - '''), - 'study_tags.yml': textwrap.dedent('''\ - name: study_name - ''') - }) as study_dir: - self.logger.setLevel(logging.WARNING) - validateData.validate_study( - study_dir, - PORTAL_INSTANCE, - self.logger, - relaxed_mode=False, - strict_maf_checks=False) - record_list = self.get_log_records() - self.assertEqual(0, len(record_list)) - for record in record_list: - self.assertEqual(logging.ERROR, record.levelno) - -class CaseListDirTestCase(PostClinicalDataFileTestCase): - - """Test validations of the case list directory.""" - - def test_duplicated_stable_id(self): - """Test if an error is issued when two lists have the same id.""" - self.logger.setLevel(logging.ERROR) - validateData.processCaseListDirectory( - 'test_data/case_lists_duplicated', - 'brca_tcga_pub', - self.logger) - record_list = self.get_log_records() - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('multiple', record.getMessage().lower()) - self.assertTrue(record.cause.startswith('brca_tcga_pub_all'), - "Error is not about the id 'brca_tcga_pub_all'") - - def test_duplicated_sample_id(self): - """Test if an warning is issued when one list has duplicate sample id""" - self.logger.setLevel(logging.WARNING) - validateData.processCaseListDirectory( - 'test_data/case_lists_duplicated_sampleid', - 'brca_tcga_pub', - self.logger) - record_list = self.get_log_records() - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('duplicate', record.getMessage().lower()) - - def test_invalid_category(self): - """Test if an error is issued for an invalid case list category""" - self.logger.setLevel(logging.ERROR) - validateData.processCaseListDirectory( - 'test_data/case_lists_invalid_category', - 'brca_tcga_pub', - self.logger) - record_list = self.get_log_records() - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('invalid', record.getMessage().lower()) - - def test_duplicate_category(self): - """Test if an error is issued for an duplicate case list category""" - self.logger.setLevel(logging.WARNING) - validateData.processCaseListDirectory( - 'test_data/case_lists_duplicate_category', - 'brca_tcga_pub', - self.logger) - record_list = self.get_log_records() - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('used in other case list', record.getMessage().lower()) - - def test_missing_caselists(self): - """Test if errors are issued if certain case lists are not defined.""" - self.logger.setLevel(logging.ERROR) - validateData.validate_study( - 'test_data/study_missing_caselists', - PORTAL_INSTANCE, - self.logger, - False, False) - record_list = self.get_log_records() - - # Test if there are 3 warnings, for 3 missing case lists - self.assertEqual(3, len(record_list)) - record_iterator = iter(record_list) - - # Test the missing global case list - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('spam_all', record.getMessage()) - self.assertIn('add_global_case_list', record.getMessage()) - - # Test the missing global _sequenced list - record = next(record_iterator) - self.assertIn('spam_sequenced', record.getMessage()) - self.assertIn('please add this case list', record.getMessage()) - - # Test the missing global _cna list - record = next(record_iterator) - self.assertIn('spam_cna', record.getMessage()) - self.assertIn('please add this case list', record.getMessage()) - - def test_undefined_cases_listed_in_file_order(self): - """Test if undefined cases are reported in the order encountered.""" - with temp_inputfolder({ - 'meta_study.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - type_of_cancer: brca - name: Spam (spam) - description: Baked beans - '''), - 'meta_samples.txt': textwrap.dedent('''\ - cancer_study_identifier: spam - genetic_alteration_type: CLINICAL - datatype: SAMPLE_ATTRIBUTES - data_filename: data_samples.txt - '''), - 'data_samples.txt': textwrap.dedent('''\ - #Patient Identifier\tSample Identifier - #PatID\tSampId - #STRING\tSTRING - #1\t1 - PATIENT_ID\tSAMPLE_ID - Patient1\tPatient1-Sample1 - '''), - Path('case_lists', 'cases_all.txt'): textwrap.dedent('''\ - cancer_study_identifier: spam - stable_id: spam_all - case_list_name: All tumors - case_list_description: All tumor samples (4 samples) - case_list_ids: Patient0-Sample1\tPatient2-Sample3\tPatient1-Sample1\tPatient1-Sample2 - ''') - }) as study_dir: - self.logger.setLevel(logging.WARNING) - validateData.validate_study( - study_dir, - PORTAL_INSTANCE, - self.logger, - relaxed_mode=False, - strict_maf_checks=False) - record_list = self.get_log_records() - reported_sample_ids = [record.cause for record in record_list] - self.assertEqual( - reported_sample_ids, - ['Patient0-Sample1', 'Patient2-Sample3', 'Patient1-Sample2']) - -class MetaFilesTestCase(LogBufferTestCase): - - """Tests for the contents of the meta files.""" - - def test_unnecessary_and_wrong_stable_id(self): - """Tests to check behavior when stable_id is not needed (warning) or wrong(error).""" - self.logger.setLevel(logging.WARNING) - validateData.process_metadata_files( - 'test_data/study_metastableid', - PORTAL_INSTANCE, - self.logger, False, False) - record_list = self.get_log_records() - # expecting 1 warning, 3 errors: - self.assertEqual(4, len(record_list)) - # get both into a variable to avoid dependency on order: - errors = [] - for record in record_list: - if record.levelno == logging.ERROR: - errors.append(record.cause) - else: - warning = record - - # expecting one error about wrong stable_id in meta_expression: - self.assertEqual(3, len(errors)) - self.assertIn('mrna_test', errors) - self.assertIn('gistic', errors) - self.assertIn('treatment ic50', errors) - - # expecting one warning about stable_id not being recognized in _samples - self.assertEqual(logging.WARNING, warning.levelno) - self.assertEqual('stable_id', warning.cause) - - def test_invalid_pmid_values(self): - """Test to check whether the validator throws an error for invalid PMID values in meta_study.txt.""" - self.logger.setLevel(logging.ERROR) - validateData.process_metadata_files( - 'test_data/meta_study/invalid_pmid_values', - PORTAL_INSTANCE, - self.logger, False, False) - - # expecting three errors about invalid PMID - record_list = self.get_log_records() - self.assertEqual(3, len(record_list)) - record = record_list.pop() - self.assertEqual('The PMID field in meta_study should be a comma separated list of integers', record.getMessage()) - self.assertEqual('29617662 29625055', record.cause) - record = record_list.pop() - self.assertEqual('The PMID field in meta_study should be a comma separated list of integers', record.getMessage()) - self.assertEqual('29622463A', record.cause) - record = record_list.pop() - self.assertEqual('The PMID field in meta_study should not contain any embedded whitespace', record.getMessage()) - self.assertEqual('29625048, 29596782, 29622463A, 29617662 29625055, 29625050', record.cause) - - def test_show_profile_setting_for_cna(self): - """Test the `show_profile_in_analysis_tab: false` setting for continuous CNA data""" - self.logger.setLevel(logging.ERROR) - validateData.process_metadata_files( - 'test_data/meta_study/invalid_show_profile_setting_cna', - PORTAL_INSTANCE, - self.logger, False, False) - record_list = self.get_log_records() - # expecting 1 error: - self.assertEqual(1, len(record_list)) - - # Should raise an error when show_profile_in_analysis_tab is not false for non-discrete CNA metafile - record = record_list.pop() - self.assertEqual("The 'show_profile_in_analysis_tab' setting must be 'false', as this is only applicable for CNA data of the DISCRETE type.", record.getMessage()) - -class HeaderlessClinicalDataValidationTest(PostClinicalDataFileTestCase): - - """Tests for validation of clinical data files without metadata headers. - - When the script is run in relaxed mode, files with incorrect - attribute metadata headers should be validated until the end - rather than considered unparseable from the header on. - """ - - def test_headerless_clinical_sample(self): - """Test relaxed validation of sample attr files without metadata.""" - self.logger.setLevel(logging.INFO) - record_list = self.validate('data_clinical_sam_no_hdr.txt', - validateData.SampleClinicalValidator, None, True) - # we expect a list of records ending in an info message about all lines - # being parsed -- if the file had been declared unparseable before the - # header it would have issued an error instead. - final_record = record_list[-1] - self.assertEqual(logging.INFO, final_record.levelno) - self.assertTrue(final_record.getMessage().lower().startswith( - 'read 13 lines')) - - def test_nonrelaxed_headerless_clinical_sample(self): - """Test regular validation of sample attr files without metadata.""" - self.logger.setLevel(logging.INFO) - record_list = self.validate('data_clinical_sam_no_hdr.txt', - validateData.SampleClinicalValidator, None, False) - # test if the list of records logged ends in an error about the file - # being unparseable, rather than an info about it being read to the end - final_record = record_list[-1] - self.assertEqual(logging.ERROR, final_record.levelno) - self.assertIn('cannot be parsed', final_record.getMessage().lower()) - - def test_headerless_clinical_patient(self): - """Test relaxed validation of patient attr files without metadata.""" - self.logger.setLevel(logging.INFO) - record_list = self.validate('data_clinical_pat_no_hdr.txt', - validateData.PatientClinicalValidator, None, True) - # we expect a list of records ending in an info message about all lines - # being parsed -- if the file had been declared unparseable before the - # header it would have issued an error instead. - final_record = record_list[-1] - self.assertEqual(logging.INFO, final_record.levelno) - self.assertTrue(final_record.getMessage().lower().startswith( - 'read 13 lines')) - - def test_nonrelaxed_headerless_clinical_patient(self): - """Test regular validation of patient attr files without metadata.""" - self.logger.setLevel(logging.INFO) - record_list = self.validate('data_clinical_pat_no_hdr.txt', - validateData.PatientClinicalValidator, None, False) - # test if the list of records logged ends in an error about the file - # being unparseable, rather than an info about it being read to the end - final_record = record_list[-1] - self.assertEqual(logging.ERROR, final_record.levelno) - self.assertIn('cannot be parsed', final_record.getMessage().lower()) - -class DataFileIOTestCase(PostClinicalDataFileTestCase): - """Test if the right behavior occurs if study files cannot be read.""" - - def test_missing_datafile(self): - """Test the error if files referenced from meta files do not exist.""" - self.logger.setLevel(logging.ERROR) - record_list = self.validate('filename-that-does-not-exist.txt', - validateData.ContinuousValuesValidator) - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('file', record.getMessage().lower()) - -def _resetMultipleFileHandlerClassVars(): - """Reset the state of classes that check mulitple files of the same type. - - GsvaWiseFileValidator classes check - consistency between multiple data files by collecting information in class variables. - This implementation is not consistent with the unit test environment that simulates - different studies to be loaded. To ensure real-world fucntionality the class variables - should be reset before each unit test that tests multi file consistency.""" - - for c in [ validateData.GsvaWiseFileValidator ]: - c.prior_validated_sample_ids = None - c.prior_validated_feature_ids = None - c.prior_validated_header = None - -# --------------------------- resources wise test ------------------------------ - -class ResourceDefinitionWiseTestCase(PostClinicalDataFileTestCase): - - def test_resource_definition_missing_resourceId(self): - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_definition_missing_resourceId.txt', - validateData.ResourceDefinitionValidator) - - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Missing RESOURCE_ID', record.getMessage()) - -class ResourceWiseTestCase(PostClinicalDataFileTestCase): - def test_resource_is_not_url(self): - # set RESOURCE_DEFINITION_DICTIONARY (which should be initialized before validate resource data) - validateData.RESOURCE_DEFINITION_DICTIONARY = {'PATHOLOGY_SLIDE': ['SAMPLE']} - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_is_not_url.txt', - validateData.ResourceValidator) - - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('not an url', record.getMessage()) - # reset RESOURCE_DEFINITION_DICTIONARY - validateData.RESOURCE_DEFINITION_DICTIONARY = {} - - # sample resources tests - def test_sample_resource_should_have_definition(self): - # reset RESOURCE_DEFINITION_DICTIONARY - validateData.RESOURCE_DEFINITION_DICTIONARY = {} - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_sample_valid.txt', - validateData.SampleResourceValidator) - - self.assertEqual(6, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('sample resource is not defined correctly', record.getMessage()) - - def test_sample_resource_has_definition_in_different_type(self): - # set RESOURCE_DEFINITION_DICTIONARY (which should be initialized before validate resource data) - # PATHOLOGY_SLIDE is duplicated in SAMPLE and PATIENT - validateData.RESOURCE_DEFINITION_DICTIONARY = {'PATHOLOGY_SLIDE': ['SAMPLE', 'PATIENT']} - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_resource_sample_valid.txt', - validateData.SampleResourceValidator) - - self.assertEqual(3, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('sample resource has been used by more than one RESOURCE_TYPE', record.getMessage()) - - def test_sample_resource_has_duplication(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_sample_duplicate.txt', - validateData.SampleResourceValidator) - - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Duplicated resources found', record.getMessage()) - - # patient resources tests - def test_patient_resource_should_have_definition(self): - # reset global variables - validateData.RESOURCE_DEFINITION_DICTIONARY = {} - validateData.RESOURCE_PATIENTS_WITH_SAMPLES = set(["TCGA-A2-A04P", "TCGA-A1-A0SK", "TCGA-A2-A0CM"]) - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_patient_valid.txt', - validateData.PatientResourceValidator) - - self.assertEqual(6, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('patient resource is not defined correctly', record.getMessage()) - - # reset global variables - validateData.RESOURCE_PATIENTS_WITH_SAMPLES = None - - def test_patient_resource_has_definition_in_different_type(self): - # set RESOURCE_DEFINITION_DICTIONARY (which should be initialized before validate resource data) - # PATHOLOGY_SLIDE is duplicated in SAMPLE and PATIENT - validateData.RESOURCE_DEFINITION_DICTIONARY = {'PATIENT_NOTES': ['SAMPLE', 'PATIENT']} - validateData.RESOURCE_PATIENTS_WITH_SAMPLES = set(["TCGA-A2-A04P", "TCGA-A1-A0SK", "TCGA-A2-A0CM"]) - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_resource_patient_valid.txt', - validateData.PatientResourceValidator) - - self.assertEqual(3, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('patient resource has been used by more than one RESOURCE_TYPE', record.getMessage()) - - # reset global variables - validateData.RESOURCE_PATIENTS_WITH_SAMPLES = None - - def test_patient_resource_has_duplication(self): - validateData.RESOURCE_PATIENTS_WITH_SAMPLES = set(["TCGA-A2-A04P", "TCGA-A1-A0SK", "TCGA-A2-A0CM"]) - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_patient_duplicate.txt', - validateData.PatientResourceValidator) - - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Duplicated resources found', record.getMessage()) - - # reset global variables - validateData.RESOURCE_PATIENTS_WITH_SAMPLES = None - - # study resources tests - def test_study_resource_should_have_definition(self): - # reset global variables - validateData.RESOURCE_DEFINITION_DICTIONARY = {} - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_study_valid.txt', - validateData.StudyResourceValidator) - - self.assertEqual(4, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('study resource is not defined correctly', record.getMessage()) - - def test_study_resource_has_definition_in_different_type(self): - # set RESOURCE_DEFINITION_DICTIONARY (which should be initialized before validate resource data) - # PATHOLOGY_SLIDE is duplicated in SAMPLE and STUDY - validateData.RESOURCE_DEFINITION_DICTIONARY = {'STUDY_SPONSORS': ['STUDY', 'SAMPLE']} - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_resource_study_valid.txt', - validateData.StudyResourceValidator) - - self.assertEqual(2, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.WARNING, record.levelno) - self.assertIn('study resource has been used by more than one RESOURCE_TYPE', record.getMessage()) - - def test_study_resource_has_duplication(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_resource_study_duplicate.txt', - validateData.StudyResourceValidator) - - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Duplicated resources found', record.getMessage()) -# -------------------------- end resource definition wise test ---------------------------- - -# --------------------------- generic assay test ------------------------------ -class GenericAssayWiseTestCase(PostClinicalDataFileTestCase): - def test_generic_assay_missing_entity_id_column(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_without_entity_id_column.txt', - validateData.GenericAssayWiseFileValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url'}) - - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # Missing column: ENTITY_STABLE_ID - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Missing column: ENTITY_STABLE_ID', record.getMessage()) - # Invalid column header - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Invalid column header', record.getMessage()) - - def test_sample_generic_assay_sample_not_defined(self): - self.logger.setLevel(logging.WARNING) - record_list = self.validate('data_generic_assay_sample_not_defined.txt', - validateData.GenericAssayWiseFileValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url', - 'patient_level': 'false'}) - - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # Sample not defined - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Sample ID not defined in clinical file', record.getMessage()) - # Invalid column header - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Invalid column header', record.getMessage()) - - def test_patient_generic_assay_patient_not_defined(self): - self.logger.setLevel(logging.ERROR) - validateData.PATIENTS_WITH_SAMPLES = set(["TCGA-A1-A0SB", "TCGA-A1-A0SD", "TCGA-A1-A0SE", "TCGA-A2-A04U", "TCGA-B6-A0RS", "TCGA-BH-A0HP", "TCGA-BH-A18P"]) - record_list = self.validate('data_generic_assay_patient_not_defined.txt', - validateData.GenericAssayWiseFileValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url', - 'patient_level': 'true'}) - - self.assertEqual(2, len(record_list)) - record_iterator = iter(record_list) - # Patient not defined - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Patient ID not defined in clinical file', record.getMessage()) - # Invalid column header - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Invalid column header', record.getMessage()) - -class GenericAssayContinuousTestCase(PostClinicalDataFileTestCase): - def test_generic_assay_with_valid_continuous_data(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_valid_continuous.txt', - validateData.GenericAssayContinuousValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url'}) - - self.assertEqual(0, len(record_list)) - - def test_generic_assay_with_non_numerical_data(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_with_non_numerical_data.txt', - validateData.GenericAssayContinuousValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url'}) - - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn(record.cause, 'NON_NUMERIC') - -class GenericAssayCategoricalTestCase(PostClinicalDataFileTestCase): - def test_generic_assay_with_valid_categorical_data(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_valid_categorical.txt', - validateData.GenericAssayCategoricalValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url'}) - - self.assertEqual(0, len(record_list)) - - def test_generic_assay_with_enpty_cell_data(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_empty_cell.txt', - validateData.GenericAssayCategoricalValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url'}) - - self.assertEqual(0, len(record_list)) - - def test_generic_assay_predefined_datatype_with_invalid_data_value(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_categorical_invalid_predefined_data.txt', - validateData.GenericAssayCategoricalValidator, - extra_meta_fields={ - 'generic_assay_type': 'ARMLEVEL_CNA', - 'generic_entity_meta_properties': 'name,description'}) - - self.assertEqual(8, len(record_list)) - record_iterator = iter(record_list) - record = next(record_iterator) - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('possible values are [Gain, Loss, Unchanged]', record.getMessage()) - - def test_generic_assay_predefined_datatype_with_valid_data_value(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_categorical_valid_predefined_data.txt', - validateData.GenericAssayCategoricalValidator, - extra_meta_fields={ - 'generic_assay_type': 'ARMLEVEL_CNA', - 'generic_entity_meta_properties': 'name,description'}) - - self.assertEqual(0, len(record_list)) - -class GenericAssayBinaryTestCase(PostClinicalDataFileTestCase): - def test_generic_assay_with_with_valid_binary_data(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_valid_binary.txt', - validateData.GenericAssayBinaryValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url'}) - - self.assertEqual(0, len(record_list)) - - def test_generic_assay_with_not_defined_data(self): - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_generic_assay_with_not_defined_data.txt', - validateData.GenericAssayBinaryValidator, - extra_meta_fields={ - 'generic_entity_meta_properties': 'name,description,url'}) - - self.assertEqual(1, len(record_list)) - record = record_list.pop() - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn(record.cause, 'NOT_DEFINED') -# -------------------------- end generic assay test ---------------------------- - -class CNADiscretePDAAnnotationsValidatorTestCase(PostClinicalDataFileTestCase): - - def test_required_gene_columns(self): - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_pd_annotation_missing_col_gene_ids.txt', - validateData.CNADiscretePDAAnnotationsValidator) - - self.assertEqual(2, len(record_list)) - record = record_list[0] - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Hugo_Symbol or Entrez_Gene_Id column needs to be present in the file.', record.getMessage()) - - def test_required_sample_columns(self): - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_pd_annotation_missing_col_sampleid.txt', - validateData.CNADiscretePDAAnnotationsValidator) - - self.assertEqual(2, len(record_list)) - record = record_list[0] - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Missing column: SAMPLE_ID', record.getMessage()) - - def test_required_driver_columns(self): - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_pd_annotation_missing_col_driver.txt', - validateData.CNADiscretePDAAnnotationsValidator) - - self.assertEqual(2, len(record_list)) - record = record_list[0] - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('Column cbp_driver_annotation found without any cbp_driver column.', record.getMessage()) - - def test_required_field_permutations(self): - - self.logger.setLevel(logging.ERROR) - record_list = self.validate('data_pd_annotation_missing_fields.txt', - validateData.CNADiscretePDAAnnotationsValidator) - - self.assertEqual(3, len(record_list)) - record = record_list[0] - self.assertIn('Only "Putative_Passenger", "Putative_Driver", "NA", "Unknown" and "" (empty) are allowed.', record.getMessage()) - self.assertEqual(logging.ERROR, record.levelno) - record = record_list[1] - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('No Entrez gene id or gene symbol provided for gene.', record.getMessage()) - record = record_list[2] - self.assertEqual(logging.ERROR, record.levelno) - self.assertIn('This line has no value for cbp_driver_tiers and a value for cbp_driver_tiers_annotation. Please, fill the cbp_driver_tiers column.', record.getMessage()) - -if __name__ == '__main__': - unittest.main(buffer=True) diff --git a/db-scripts/pom.xml b/db-scripts/pom.xml deleted file mode 100644 index c0c29b8f7c8..00000000000 --- a/db-scripts/pom.xml +++ /dev/null @@ -1,13 +0,0 @@ - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - db-scripts - diff --git a/db-scripts/src/main/resources/gen-cgds-test-schema.sh b/db-scripts/src/main/resources/gen-cgds-test-schema.sh deleted file mode 100755 index cd2548dc60c..00000000000 --- a/db-scripts/src/main/resources/gen-cgds-test-schema.sh +++ /dev/null @@ -1,23 +0,0 @@ -#!/bin/bash - -# The purpose of this script is to create a test version of the database schema to load in: -# `./persistence/persistence-mybatis/src/test/resources/testContextDatabase.xml` -# -# The only difference between the production version of `./db-scripts/src/main/resources/cgds.sql` and the -# version loaded for testing is the dropping of the partial index on `mutation_event`.`TUMOR_SEQ_ALLELE`. -# -# This is done to accommodate the H2 MySQL driver since the latest version (1.4.197) does not yet -# support partial indexing. -# -# When the H2 MySQL driver finally does support partial indexing, this script can be removed and the production -# version can be used for testing again. -# -# author: ochoaa -# last update: 2019/02/13 - -CGDS_SCHEMA_FILE=$(find . -type f -name "cgds.sql" | grep -v target) -DIR=$(dirname $CGDS_SCHEMA_FILE) -CGDS_TEST_SCHEMA_FILE=$DIR/cgds-test.sql -grep -v "KEY_MUTATION_EVENT_DETAILS" $CGDS_SCHEMA_FILE > $CGDS_TEST_SCHEMA_FILE -sed -i.bak 's/ JSON,/ TEXT,/g' $CGDS_TEST_SCHEMA_FILE -rm $CGDS_TEST_SCHEMA_FILE.bak diff --git a/docker/web-and-data/Dockerfile b/docker/web-and-data/Dockerfile index 410cf122b46..5252f98b4d9 100644 --- a/docker/web-and-data/Dockerfile +++ b/docker/web-and-data/Dockerfile @@ -11,34 +11,22 @@ # NOTE: the .git folder is included in the build stage, but excluded # from the final image. No confidential information is exposed. # (see: stackoverflow.com/questions/56278325) -FROM maven:3-eclipse-temurin-11 as build +FROM maven:3-eclipse-temurin-21 as build # download maven dependencies first to take advantage of docker caching -COPY pom.xml /cbioportal/ -COPY version.sh /cbioportal/ +COPY pom.xml /cbioportal/ +COPY version.sh /cbioportal/ WORKDIR /cbioportal -COPY core/pom.xml core/ -COPY db-scripts/pom.xml db-scripts/ -COPY model/pom.xml model/ -COPY persistence/pom.xml persistence/ -COPY persistence/persistence-api/pom.xml persistence/persistence-api/ -COPY persistence/persistence-connections/pom.xml persistence/persistence-connections/ -COPY persistence/persistence-mybatis/pom.xml persistence/persistence-mybatis/ -COPY scripts/pom.xml scripts/ -COPY security/pom.xml security/ -COPY security/security-spring/pom.xml security/security-spring/ -COPY service/pom.xml service/ -COPY web/pom.xml web/ -RUN for subproject in */.; do cp version.sh "$subproject"; cd "$subproject"; mvn dependency:go-offline --fail-never; cd ..; done -COPY portal/pom.xml portal/ +# RUN for subproject in */.; do cp version.sh "$subproject"; cd "$subproject"; mvn dependency:go-offline --fail-never; cd ..; done + RUN mvn dependency:go-offline --fail-never COPY $PWD /cbioportal -# Use quite output so we can see the build steps easily -RUN mvn -DskipTests clean install -q +RUN mvn install package -DskipTests -q +RUN mkdir -p target/dependency && (cd target/dependency; jar -xf ../*-exec.jar) -FROM eclipse-temurin:11 +FROM eclipse-temurin:21 # download system dependencies first to take advantage of docker caching RUN apt-get update; apt-get install -y --no-install-recommends \ @@ -50,33 +38,41 @@ RUN apt-get update; apt-get install -y --no-install-recommends \ python3-dev \ python3-pip \ unzip \ - && rm -rf /var/lib/apt/lists/* \ + && rm -rf /var/lib/apt/lists/* \ && pip3 install wheel -ENV PORTAL_WEB_HOME=/cbioportal-webapp - +# copy over core files and data-related scripts RUN mkdir -p /cbioportal -COPY --from=build /cbioportal/portal/target/cbioportal*.war /app.war -COPY --from=build /cbioportal/portal/target/dependency/webapp-runner.jar /webapp-runner.jar -# copy over core jar and scripts -COPY --from=build /cbioportal/core /cbioportal/core -COPY --from=build /cbioportal/scripts /cbioportal/scripts -COPY --from=build /cbioportal/db-scripts /cbioportal/db-scripts + +#Download core files +RUN wget https://github.com/cBioPortal/cbioportal-core/releases/download/1.0.4/core-1.0.4.jar -P core/ ; cd core ; jar -xf core-1.0.4.jar scripts/ ; chmod -R a+x scripts/ ; cd ..; + + +COPY --from=build /cbioportal/src/main/resources/db-scripts /cbioportal/db-scripts COPY --from=build /cbioportal/requirements.txt /cbioportal/requirements.txt # install build and runtime dependencies -# ignore update failures +# ignore update failure980[1298[01 w2308s RUN pip3 install -r /cbioportal/requirements.txt # add importer scripts to PATH for easy running in containers -RUN find /cbioportal/core/src/main/scripts/ -type f -executable \! -name '*.pl' -print0 | xargs -0 -- ln -st /usr/local/bin +RUN find /core/scripts/ -type f -executable \! -name '*.pl' -print0 | xargs -0 -- ln -st /usr/local/bin # put config files in this folder if you want to override config +ENV PORTAL_WEB_HOME=/cbioportal-webapp ENV PORTAL_HOME=/cbioportal +ENV JAVA_OPTS="-Xms2G -Xmx8G" +ENV WEBAPP_OPTS= +# add exploded Spring Boot jar contents to image +# See: https://spring.io/guides/topicals/spring-boot-docker/ +ARG DEPENDENCY=/cbioportal/target/dependency RUN mkdir -p $PORTAL_WEB_HOME -RUN unzip /app.war -d $PORTAL_WEB_HOME +COPY --from=build ${DEPENDENCY}/BOOT-INF/lib $PORTAL_WEB_HOME/lib/ +COPY --from=build ${DEPENDENCY}/META-INF $PORTAL_WEB_HOME/META-INF/ +COPY --from=build ${DEPENDENCY}/BOOT-INF/classes $PORTAL_WEB_HOME/ # add entrypoint COPY --from=build /cbioportal/docker/web-and-data/docker-entrypoint.sh /usr/local/bin/ ENTRYPOINT ["docker-entrypoint.sh"] +CMD ["sh", "-c", "java $(echo $JAVA_OPTS) -cp /cbioportal-webapp:/cbioportal-webapp/lib/* org.cbioportal.PortalApplication $(echo $WEBAPP_OPTS)"] \ No newline at end of file diff --git a/docker/web-and-data/docker-entrypoint.sh b/docker/web-and-data/docker-entrypoint.sh index b474a216d5b..5c78c46ac53 100755 --- a/docker/web-and-data/docker-entrypoint.sh +++ b/docker/web-and-data/docker-entrypoint.sh @@ -2,8 +2,8 @@ set -eo pipefail shopt -s nullglob -BAKED_IN_WAR_CONFIG_FILE=/cbioportal-webapp/WEB-INF/classes/portal.properties -CUSTOM_PROPERTIES_FILE=cbioportal/portal.properties +BAKED_IN_WAR_CONFIG_FILE=/cbioportal-webapp/WEB-INF/classes/application.properties +CUSTOM_PROPERTIES_FILE="$PORTAL_HOME/application.properties" # check to see if this file is being run or sourced from another script _is_sourced() { @@ -100,16 +100,33 @@ migrate_db() { POTENTIAL_DB_PARAMS=$@ if [[ -f $CUSTOM_PROPERTIES_FILE ]]; then - python3 /cbioportal/core/src/main/scripts/migrate_db.py -y -p $CUSTOM_PROPERTIES_FILE -s /cbioportal/db-scripts/src/main/resources/migration.sql + python3 /core/scripts/migrate_db.py -y -p $CUSTOM_PROPERTIES_FILE -s /cbioportal/db-scripts/migration.sql else - python3 /cbioportal/core/src/main/scripts/migrate_db.py -y -p <(parse_db_params_from_config_and_command_line $POTENTIAL_DB_PARAMS) -s /cbioportal/db-scripts/src/main/resources/migration.sql + python3 /core/migrate_db.py -y -p <(parse_db_params_from_config_and_command_line $POTENTIAL_DB_PARAMS) -s /cbioportal/db-scripts/migration.sql fi } _main() { # when running the webapp, check db and do migration first # check if command is something like "java -jar webapp-runner.jar" - if [[ "$@" == *java* ]] && [[ "$@" == *-jar* ]] && [[ "$@" == *webapp-runner.jar* ]]; then + + # Define the regex pattern + pattern1='(java)*(org\.cbioportal\.PortalApplication)' + pattern2='(java)*(-jar)*(cbioportal-exec.jar)' + found=false + + # Loop through all arguments + for arg in "$@"; do + if [[ "$arg" =~ $pattern1 ]] || [[ "$arg" =~ $pattern2 ]]; then + found=true + break + fi + done + + # Check if the application is found in the arguments + if [ "$found" = true ]; then + echo "Running Migrate DB Script" + # Custom logic to handle the case when "org.cbioportal.PortalApplication" is present # Parse database config. Use command line parameters (e.g. -Ddb.host) if # available, otherwise use portal.properties if [ -n "$SHOW_DEBUG_INFO" ] && [ "$SHOW_DEBUG_INFO" != "false" ]; then diff --git a/docker/web/Dockerfile b/docker/web/Dockerfile index 7179acb1441..8e1bccaf32c 100644 --- a/docker/web/Dockerfile +++ b/docker/web/Dockerfile @@ -13,21 +13,15 @@ # # WARNING: the shendoah image is a nightly, untested, experimental build. If # you want to use an official openjdk image instead use the web-and-data image. -FROM maven:3-eclipse-temurin-11 as build +FROM maven:3-eclipse-temurin-21 as build COPY $PWD /cbioportal WORKDIR /cbioportal ARG MAVEN_OPTS=-DskipTests # Use quite output so we can see the build steps easily RUN mvn ${MAVEN_OPTS} clean install -q - -FROM eclipse-temurin:11 +FROM eclipse-temurin:21 ENV PORTAL_WEB_HOME=/cbioportal-webapp - -COPY --from=build /cbioportal/portal/target/cbioportal*.war /app.war -COPY --from=build /cbioportal/portal/target/dependency/webapp-runner.jar /webapp-runner.jar - RUN mkdir -p $PORTAL_WEB_HOME -RUN cd $PORTAL_WEB_HOME && jar -xvf /app.war - -CMD ["java", "${JAVA_OPTS} -jar /webapp-runner.jar ${WEBAPP_OPTS} ${PORTAL_WEB_HOME}"] +COPY --from=build /cbioportal/target/*-exec.jar ${PORTAL_WEB_HOME}/app.jar +CMD ["java ${JAVA_OPTS}", "-jar", "${PORTAL_WEB_HOME}/app.jar"] diff --git a/docs/Migration-Guide.md b/docs/Migration-Guide.md index 624124f75fc..b1ebc1b3d37 100644 --- a/docs/Migration-Guide.md +++ b/docs/Migration-Guide.md @@ -1,6 +1,27 @@ # Migration Guide -This page describes various changes deployers will need to make as they deploy newer versions of the portal. - +This page describes various changes deployers will need to make as they deploy newer versions of the portal. + +## v5 -> v6 + +- Override Spring Application Properties: + - The process of overriding properties has been updated for example previously users could do the following `java -Xms2g -Xmx4g -Dauthenticate=saml -jar webapp-runner.jar`. + Now users must pass Spring Application properties after the `.jar` and replace `-Dauthenticate=false` with `--authenticate=false`. + For example `java -Xms2g -Xmx4g -jar cbioportal/target/cbioportal-exec.jar --spring.config.location=cbioportal/application.properties --authenticate=false` +- `portal.properties` migration needed: + - `portal.properties` has been renamed to `application.properties`. This is the Spring Boot default name + - `authenticate` values of `googleplus`, `social_auth_google` and `social_auth_microsoft` have been replaced by `optional_oauth2` + - If you used this property before without authorization (unlikely, only the public cBioPortal instance uses this), add the property `always_show_study_group=PUBLIC` and confirm that all studies in your database you'd like to be be public have `GROUPS` values set to `PUBLIC` +- `Redis HTTP Session` + - To disable redis session (Must be disabled if redis is not setup) `spring.autoconfigure.exclude=org.springframework.boot.autoconfigure.data.redis.RedisAutoConfiguration` + - To enable `spring.data.redis.host=localhost` `spring.data.redis.port=6379` +- `Security` changes: + - Properties used to configure Security have changed see [security.properties.EXAMPLE](deployment/customization/security.properties-Reference.md) + - `SAML` changes: + - need to generate new keys (`.jks` no longer works) + - if you have an existing client, update saml keys with newly generate keys + - if you have an existing client, update redirect_uri to be without port 443 + - You can now use a URL here, instead of metadata XML: `spring.security.saml2.relyingparty.registration.cbio-saml-idp.assertingparty.metadata-uri` ## v5.3 -> v5.4 diff --git a/docs/deployment/authorization-and-authentication/Authenticating-Users-via-SAML.md b/docs/deployment/authorization-and-authentication/Authenticating-Users-via-SAML.md index 6a9ef088061..ebcab3d5e51 100644 --- a/docs/deployment/authorization-and-authentication/Authenticating-Users-via-SAML.md +++ b/docs/deployment/authorization-and-authentication/Authenticating-Users-via-SAML.md @@ -195,7 +195,7 @@ adding your own version of the `SAMLUserDetailsService` class. Next, please read the Wiki page on [User Authorization](User-Authorization.md), and add user rights for a single user. -## Configuring the Login.jsp Page (not applicable to most external IDPs) +## Configuring the Login.html Page (not applicable to most external IDPs) The login page is configurable via the `portal.properties` properties `skin.authorization_message` and `skin.login.saml.registration_htm`. For example in `skin.authorization_message` you can be set to something like this: diff --git a/docs/deployment/customization/security.properties-Reference.md b/docs/deployment/customization/security.properties-Reference.md new file mode 100644 index 00000000000..1eede866e94 --- /dev/null +++ b/docs/deployment/customization/security.properties-Reference.md @@ -0,0 +1,103 @@ +# Application Properties + +The following are the properties for configuring authentication and authorization in the application. + +## Authentication Configuration + +### General Authentication Settings + +```properties +# authentication (available options: [false, oauth2, optional_oauth2, saml]) +authenticate=false +``` +### OAUTH2 +#### Google OAuth2 Client/Login Configuration + +#### Example of utilizing google client for oAuth2 (Authentication) +```properties +spring.security.oauth2.client.registration.google.clientId= +spring.security.oauth2.client.registration.google.clientSecret= +``` +#### Custom OAUTH2 Client Configuration + +```properties +# For OIDC clients the issuer-uri is sufficient to autoconfigure the provider (via .well-known endpoint) +spring.security.oauth2.client.provider.cbio-idp.issuer-uri=http://localhost:8080/realms/cbioportal +spring.security.oauth2.client.provider.cbio-idp.user-name-attribute=email +# Required Scopes [openid, email, roles] +spring.security.oauth2.client.registration.cbio-idp.scope=openid,email,roles +spring.security.oauth2.client.registration.cbio-idp.client-id= +spring.security.oauth2.client.registration.cbio-idp.client-secret= +``` + +##### Configuring the individual settings below is not recommended. +```properties +# spring.security.oauth2.client.provider.cbio-idp.authorization-uri= +# spring.security.oauth2.client.provider.cbio-idp.token-uri= +# TODO update docs, the user info endpoint must expose the roles !! +# spring.security.oauth2.client.provider.cbio-idp.user-info-uri= +# spring.security.oauth2.client.provider.cbio-idp.jwk-set-uri= +# spring.security.oauth2.client.provider.cbio-idp.logout-uri= # NOTE: this is not an official property. +# TODO Can be authorization_code, ... +#spring.security.oauth2.client.registration.cbio-idp.authorization-grant-type= +# TODO Can be client_secret_post, ... +#spring.security.oauth2.client.registration.cbio-idp.client-authentication-method= +#spring.security.oauth2.client.registration.cbio-idp.redirect-uri=/login/oauth2/authorization/ +``` + +### SAML Configuration + +```properties + +# For SAML 2.0 +## SAML settings +# TODO add options for auto- and manual config to docs +# TODO add to docs: metadata-uri can be both URL or metadata xml file +spring.security.saml2.relyingparty.registration.cbio-saml-idp.assertingparty.metadata-uri=classpath:/client-tailored-saml-idp-metadata.xml +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.assertingparty.metadata-uri=http://localhost:8080/realms/cbioportal/protocol/saml/descriptor +spring.security.saml2.relyingparty.registration.cbio-saml-idp.entity-id=cbioportal-saml +spring.security.saml2.relyingparty.registration.cbio-saml-idp.signing.credentials[0].certificate-location=classpath:/local.crt +spring.security.saml2.relyingparty.registration.cbio-saml-idp.signing.credentials[0].private-key-location=classpath:/local.key +spring.security.saml2.relyingparty.registration.cbio-saml-idp.singlelogout.binding=POST +# TODO add to docs (in minutes; default 1) +spring.security.oauth2.allowed-clock-skew= +``` +### Data Access Token Settings + +```properties + +## data access token settings +## Resource Server issuer-uri for Data Access Token +#spring.security.oauth2.resourceserver.jwt.issuer-uri=http://localhost:8080/realms/cbioportal +# TODO: Currently Dat.method has only been tested with oauth2 +dat.unauth_users= +dat.method=oauth2 +dat.ttl_seconds=2592000 +dat.uuid.max_number_per_user=1 +dat.jwt.secret_key= +dat.filter_user_role= + +# OAuth2 token data access settings (If using OAuth2 for Login can copy setting here) +## TODO: Reuse OAUTH2 Spring settings defined above +dat.oauth2.clientId= +dat.oauth2.clientSecret= +dat.oauth2.issuer= +dat.oauth2.accessTokenUri=/.../token +dat.oauth2.userAuthorizationUri=/.../auth +dat.oauth2.jwkUrl=/.../certs +dat.oauth2.redirectUri=/.../api/data-access-token/oauth2 +``` +### Authorization Configuration/Study View Settings + +```properties + +## Authorization +## study view settings +## always show studies with this group +always_show_study_group=PUBLIC +## Should the permissions for groups and users be filtered by this instance's app.name? +## (true means the system only handles "CBIOPORTAL:someGroupPermission" groups, false means "someGroupPermission" works) +filter_groups_by_appname=false +# Can disable authorization +security.method_authorization_enabled=true +``` \ No newline at end of file diff --git a/heroku/.profile.d/cbioportal.sh b/heroku/.profile.d/cbioportal.sh deleted file mode 100644 index b554e14e06e..00000000000 --- a/heroku/.profile.d/cbioportal.sh +++ /dev/null @@ -1 +0,0 @@ -export PORTAL_HOME=/app diff --git a/heroku/Procfile b/heroku/Procfile deleted file mode 100644 index a270e87aedc..00000000000 --- a/heroku/Procfile +++ /dev/null @@ -1 +0,0 @@ -web: java $JAVA_OPTS $SPRING_OPTS -jar portal/target/dependency/webapp-runner.jar ${WEBAPP_RUNNER_OPTIONS} --port $PORT portal/target/cbioportal.war diff --git a/jitpack.yml b/jitpack.yml new file mode 100644 index 00000000000..4d456953698 --- /dev/null +++ b/jitpack.yml @@ -0,0 +1,2 @@ +before_install: + - cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties \ No newline at end of file diff --git a/maf/pom.xml b/maf/pom.xml deleted file mode 100644 index 19a4d32db99..00000000000 --- a/maf/pom.xml +++ /dev/null @@ -1,25 +0,0 @@ - - - - master - org.mskcc.cbio - 0-unknown-version-SNAPSHOT - - 4.0.0 - maf - Portal utils - Utility classes for the Mutation Annotation Format (MAF) - - - net.sf.jopt-simple - jopt-simple - - - com.fasterxml.jackson.core - jackson-databind - - - - \ No newline at end of file diff --git a/maf/src/main/java/org/mskcc/cbio/maf/MafHeaderUtil.java b/maf/src/main/java/org/mskcc/cbio/maf/MafHeaderUtil.java deleted file mode 100644 index 416689d5cb9..00000000000 --- a/maf/src/main/java/org/mskcc/cbio/maf/MafHeaderUtil.java +++ /dev/null @@ -1,99 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.maf; - -import java.io.BufferedReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.List; - -/** - * Class to process comment lines (meta data) of a standard text file. - * Default comment line indicator is # - * - * @author Selcuk Onur Sumer - */ -public class MafHeaderUtil -{ - public static final String DEFAULT_COMMENT_CHAR = "#"; - - private String headerLine; - private List comments; - private String commentChar; - - public MafHeaderUtil(String commentChar) - { - this.comments = new ArrayList(); - this.headerLine = null; - this.commentChar = commentChar; - } - - public MafHeaderUtil() - { - this(DEFAULT_COMMENT_CHAR); - } - - public String extractHeader(BufferedReader reader) throws IOException - { - String line; - boolean done = false; - - while (!done) - { - line = reader.readLine(); - - if (line == null || - (line.trim().length() > 0) && !line.trim().startsWith(this.commentChar)) - { - done = true; - this.headerLine = line; - } - else - { - this.comments.add(line); - } - } - - return this.headerLine; - } - - public List getComments() - { - return comments; - } - - public String getHeaderLine() - { - return headerLine; - } -} diff --git a/maf/src/main/java/org/mskcc/cbio/maf/MafRecord.java b/maf/src/main/java/org/mskcc/cbio/maf/MafRecord.java deleted file mode 100644 index 673faf0cd3a..00000000000 --- a/maf/src/main/java/org/mskcc/cbio/maf/MafRecord.java +++ /dev/null @@ -1,657 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.maf; - -import java.util.Map; - -/** - * Encapsulates Details Regarding a Single MAF Record. - */ -public class MafRecord { - // standard MAF cols - private String chr; - private String ncbiBuild; - private long startPosition; - private long endPosition; - private String hugoGeneSymbol; - // store the literal value of the gene ID column for later parsing - private String givenEntrezGeneId; - private String referenceAllele; - private String variantClassification; // mutation type - private String variantType; - private String center; // sequencing center - private String strand; - private String tumorSeqAllele1; - private String tumorSeqAllele2; - private String dbSNP_RS; - private String tumorSampleID; - private String mutationStatus; - private String validationStatus; - private String sequencer; - private String dbSnpValStatus; - private String matchedNormSampleBarcode; - private String matchNormSeqAllele1; - private String matchNormSeqAllele2; - private String tumorValidationAllele1; - private String tumorValidationAllele2; - private String matchNormValidationAllele1; - private String matchNormValidationAllele2; - private String verificationStatus; - private String sequencingPhase; - private String sequenceSource; - private String validationMethod; - private String score; - private String bamFile; - - private String aminoAcidChange; - - // allele frequency cols - private int tumorAltCount; - private int tumorRefCount; - private int normalAltCount; - private int normalRefCount; - private int tTotCov; - private int tVarCov; - private int nTotCov; - private int nVarCov; - private int tumorDepth; - private float tumorVaf; - private int normalDepth; - private float normalVaf; - - // custom annotator columns - private String proteinChange; - private String codons; - private String refSeq; - private String swissprot; - private String proteinPosition; - - // Mutation Assessor cols - private String maFuncImpact; - private float maFIS; - private String maLinkVar; - private String maLinkMsa; - private String maLinkPdb; - - // Oncotator columns are renamed to maf columns - private String mafDbSnpValStatus; - private String mafVariantClassification; - private String mafRefseqMrnaId; - private String mafUniprotAccession; - private String mafCodonChange; - private int mafProteinPosStart; - private int mafProteinPosEnd; - - // custom filtering of passenger and driver mutations cols - private String driverFilter; - private String driverFilterAnn; - private String driverTiersFilter; - private String driverTiersFilterAnn; - private Map> namespacesMap; - - public String getChr() { - return chr; - } - - public void setChr(String chr) { - this.chr = chr; - } - - public String getNcbiBuild() { - return ncbiBuild; - } - - public void setNcbiBuild(String ncbiBuild) { - this.ncbiBuild = ncbiBuild; - } - - public long getStartPosition() { - return startPosition; - } - - public void setStartPosition(long startPosition) { - this.startPosition = startPosition; - } - - public long getEndPosition() { - return endPosition; - } - - public void setEndPosition(long endPosition) { - this.endPosition = endPosition; - } - - public String getHugoGeneSymbol() { - return hugoGeneSymbol; - } - - public void setHugoGeneSymbol(String hugoGeneSymbol) { - this.hugoGeneSymbol = hugoGeneSymbol; - } - - public String getGivenEntrezGeneId() { - return this.givenEntrezGeneId; - } - - public void setGivenEntrezGeneId(String entrezGeneIdAsString) { - this.givenEntrezGeneId = entrezGeneIdAsString; - } - - public String getReferenceAllele() { - return referenceAllele; - } - - public void setReferenceAllele(String referenceAllele) { - this.referenceAllele = referenceAllele; - } - - public String getVariantClassification() { - return variantClassification; - } - - public void setVariantClassification(String variantClassification) { - this.variantClassification = variantClassification; - } - - public String getVariantType() { - return variantType; - } - - public void setVariantType(String variantType) { - this.variantType = variantType; - } - - public String getCenter() { - return center; - } - - public void setCenter(String center) { - this.center = center; - } - - public String getStrand() { - return strand; - } - - public void setStrand(String strand) { - this.strand = strand; - } - - public String getTumorSeqAllele1() { - return tumorSeqAllele1; - } - - public void setTumorSeqAllele1(String tumorSeqAllele1) { - this.tumorSeqAllele1 = tumorSeqAllele1; - } - - public String getTumorSeqAllele2() { - return tumorSeqAllele2; - } - - public void setTumorSeqAllele2(String tumorSeqAllele2) { - this.tumorSeqAllele2 = tumorSeqAllele2; - } - - public String getDbSNP_RS() { - return dbSNP_RS; - } - - public void setDbSNP_RS(String dbSNP_RS) { - this.dbSNP_RS = dbSNP_RS; - } - - public String getTumorSampleID() { - return tumorSampleID; - } - - public void setTumorSampleID(String tumorSampleID) { - this.tumorSampleID = tumorSampleID; - } - - public String getMutationStatus() { - return mutationStatus; - } - - public void setMutationStatus(String mutationStatus) { - this.mutationStatus = mutationStatus; - } - - public String getValidationStatus() { - return validationStatus; - } - - public void setValidationStatus(String validationStatus) { - this.validationStatus = validationStatus; - } - - public String getSequencer() { - return sequencer; - } - - public void setSequencer(String sequencer) { - this.sequencer = sequencer; - } - - public String getDbSnpValStatus() { - return dbSnpValStatus; - } - - public void setDbSnpValStatus(String dbSnpValStatus) { - this.dbSnpValStatus = dbSnpValStatus; - } - - public String getMatchedNormSampleBarcode() { - return matchedNormSampleBarcode; - } - - public void setMatchedNormSampleBarcode(String matchedNormSampleBarcode) { - this.matchedNormSampleBarcode = matchedNormSampleBarcode; - } - - public String getMatchNormSeqAllele1() { - return matchNormSeqAllele1; - } - - public void setMatchNormSeqAllele1(String matchNormSeqAllele1) { - this.matchNormSeqAllele1 = matchNormSeqAllele1; - } - - public String getMatchNormSeqAllele2() { - return matchNormSeqAllele2; - } - - public void setMatchNormSeqAllele2(String matchNormSeqAllele2) { - this.matchNormSeqAllele2 = matchNormSeqAllele2; - } - - public String getTumorValidationAllele1() { - return tumorValidationAllele1; - } - - public void setTumorValidationAllele1(String tumorValidationAllele1) { - this.tumorValidationAllele1 = tumorValidationAllele1; - } - - public String getTumorValidationAllele2() { - return tumorValidationAllele2; - } - - public void setTumorValidationAllele2(String tumorValidationAllele2) { - this.tumorValidationAllele2 = tumorValidationAllele2; - } - - public String getMatchNormValidationAllele1() { - return matchNormValidationAllele1; - } - - public void setMatchNormValidationAllele1(String matchNormValidationAllele1) { - this.matchNormValidationAllele1 = matchNormValidationAllele1; - } - - public String getMatchNormValidationAllele2() { - return matchNormValidationAllele2; - } - - public void setMatchNormValidationAllele2(String matchNormValidationAllele2) { - this.matchNormValidationAllele2 = matchNormValidationAllele2; - } - - public String getVerificationStatus() { - return verificationStatus; - } - - public void setVerificationStatus(String verificationStatus) { - this.verificationStatus = verificationStatus; - } - - public String getSequencingPhase() { - return sequencingPhase; - } - - public void setSequencingPhase(String sequencingPhase) { - this.sequencingPhase = sequencingPhase; - } - - public String getSequenceSource() { - return sequenceSource; - } - - public void setSequenceSource(String sequenceSource) { - this.sequenceSource = sequenceSource; - } - - public String getValidationMethod() { - return validationMethod; - } - - public void setValidationMethod(String validationMethod) { - this.validationMethod = validationMethod; - } - - public String getScore() { - return score; - } - - public void setScore(String score) { - this.score = score; - } - - public String getAminoAcidChange() { - return aminoAcidChange; - } - - public void setAminoAcidChange(String aminoAcidChange) { - this.aminoAcidChange = aminoAcidChange; - } - - public String getBamFile() { - return bamFile; - } - - public void setBamFile(String bamFile) { - this.bamFile = bamFile; - } - - public int getTumorAltCount() { - return tumorAltCount; - } - - public void setTumorAltCount(int tumorAltCount) { - this.tumorAltCount = tumorAltCount; - } - - public int getTumorRefCount() { - return tumorRefCount; - } - - public void setTumorRefCount(int tumorRefCount) { - this.tumorRefCount = tumorRefCount; - } - - public int getNormalAltCount() { - return normalAltCount; - } - - public void setNormalAltCount(int normalAltCount) { - this.normalAltCount = normalAltCount; - } - - public int getNormalRefCount() { - return normalRefCount; - } - - public void setNormalRefCount(int normalRefCount) { - this.normalRefCount = normalRefCount; - } - - public int getTTotCov() { - return tTotCov; - } - - public void setTTotCov(int tTotCov) { - this.tTotCov = tTotCov; - } - - public int getTVarCov() { - return tVarCov; - } - - public void setTVarCov(int tVarCov) { - this.tVarCov = tVarCov; - } - - public int getNTotCov() { - return nTotCov; - } - - public void setNTotCov(int nTotCov) { - this.nTotCov = nTotCov; - } - - public int getNVarCov() { - return nVarCov; - } - - public void setNVarCov(int nVarCov) { - this.nVarCov = nVarCov; - } - - public int getTumorDepth() { - return tumorDepth; - } - - public void setTumorDepth(int tumorDepth) { - this.tumorDepth = tumorDepth; - } - - public float getTumorVaf() { - return tumorVaf; - } - - public void setTumorVaf(float tumorVaf) { - this.tumorVaf = tumorVaf; - } - - public int getNormalDepth() { - return normalDepth; - } - - public void setNormalDepth(int normalDepth) { - this.normalDepth = normalDepth; - } - - public float getNormalVaf() { - return normalVaf; - } - - public void setNormalVaf(float normalVaf) { - this.normalVaf = normalVaf; - } - - public String getProteinChange() { - return proteinChange; - } - - public void setProteinChange(String proteinChange) { - this.proteinChange = proteinChange; - } - - public String getCodons() { - return codons; - } - - public void setCodons(String codons) { - this.codons = codons; - } - - public String getRefSeq() { - return refSeq; - } - - public void setRefSeq(String refSeq) { - this.refSeq = refSeq; - } - - public String getSwissprot() { - return swissprot; - } - - public void setSwissprot(String swissprot) { - this.swissprot = swissprot; - } - - public String getProteinPosition() { - return proteinPosition; - } - - public void setProteinPosition(String proteinPosition) { - this.proteinPosition = proteinPosition; - } - - public String getMafVariantClassification() { - return mafVariantClassification; - } - - public void setMafVariantClassification(String mafVariantClassification) { - this.mafVariantClassification = mafVariantClassification; - } - - public String getMafDbSnpValStatus() { - return mafDbSnpValStatus; - } - - public void setMafDbSnpValStatus(String mafDbSnpValStatus) { - this.mafDbSnpValStatus = mafDbSnpValStatus; - } - - public String getMafRefseqMrnaId() { - return mafRefseqMrnaId; - } - - public void setMafRefseqMrnaId(String mafRefseqMrnaId) { - this.mafRefseqMrnaId = mafRefseqMrnaId; - } - - public String getMafUniprotAccession() { - return mafUniprotAccession; - } - - public void setMafUniprotAccession(String mafUniprotAccession) { - this.mafUniprotAccession = mafUniprotAccession; - } - - public String getMafCodonChange() { - return mafCodonChange; - } - - public void setMafCodonChange(String mafCodonChange) { - this.mafCodonChange = mafCodonChange; - } - - public int getMafProteinPosStart() { - return mafProteinPosStart; - } - - public void setMafProteinPosStart(int mafProteinPosStart) { - this.mafProteinPosStart = mafProteinPosStart; - } - - public int getMafProteinPosEnd() { - return mafProteinPosEnd; - } - - public void setMafProteinPosEnd(int mafProteinPosEnd) { - this.mafProteinPosEnd = mafProteinPosEnd; - } - - public String getMaFuncImpact() { - return maFuncImpact; - } - - public void setMaFuncImpact(String maFuncImpact) { - this.maFuncImpact = maFuncImpact; - } - - public float getMaFIS() { - return maFIS; - } - - public void setMaFIS(float maFIS) { - this.maFIS = maFIS; - } - - public String getMaLinkVar() { - return maLinkVar; - } - - public void setMaLinkVar(String maLinkVar) { - this.maLinkVar = maLinkVar; - } - - public String getMaLinkMsa() { - return maLinkMsa; - } - - public void setMaLinkMsa(String maLinkMsa) { - this.maLinkMsa = maLinkMsa; - } - - public String getMaLinkPdb() { - return maLinkPdb; - } - - public void setMaLinkPdb(String maLinkPdb) { - this.maLinkPdb = maLinkPdb; - } - - public String getDriverFilter() { - return driverFilter; - } - - public void setDriverFilter(String driverFilter) { - this.driverFilter = driverFilter; - } - - public String getDriverFilterAnn() { - return driverFilterAnn; - } - - public void setDriverFilterAnn(String driverFilterAnn) { - this.driverFilterAnn = driverFilterAnn; - } - - public String getDriverTiersFilter() { - return driverTiersFilter; - } - - public void setDriverTiersFilter(String driverTiersFilter) { - this.driverTiersFilter = driverTiersFilter; - } - - public String getDriverTiersFilterAnn() { - return driverTiersFilterAnn; - } - - public void setDriverTiersFilterAnn(String driverTiersFilterAnn) { - this.driverTiersFilterAnn = driverTiersFilterAnn; - } - - public Map> getNamespacesMap() { - return namespacesMap; - } - - public void setNamespacesMap(Map> namespacesMap) { - this.namespacesMap = namespacesMap; - } -} diff --git a/maf/src/main/java/org/mskcc/cbio/maf/MafUtil.java b/maf/src/main/java/org/mskcc/cbio/maf/MafUtil.java deleted file mode 100644 index 356ecbf470f..00000000000 --- a/maf/src/main/java/org/mskcc/cbio/maf/MafUtil.java +++ /dev/null @@ -1,781 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.maf; - - -import java.util.*; -import java.util.regex.Pattern; - -import joptsimple.internal.Strings; - -/** - * Utility Class for Parsing MAF Files. - * - * This utility class handles variable columns and column orderings within MAF Files. - */ -public class MafUtil { - private static final Pattern validNucleotidesPattern = Pattern.compile("^([ATGC]*)$"); - // standard header column names - public static final String HUGO_SYMBOL = "Hugo_Symbol"; - public static final String ENTREZ_GENE_ID = "Entrez_Gene_Id"; - public static final String CENTER = "Center"; - public static final String NCBI_BUILD = "NCBI_Build"; - public static final String CHROMOSOME = "Chromosome"; - public static final String START_POSITION = "Start_Position"; - public static final String END_POSITION = "End_Position"; - public static final String STRAND = "Strand"; - public static final String VARIANT_CLASSIFICATION = "Variant_Classification"; - public static final String VARIANT_TYPE = "Variant_Type"; - public static final String REFERENCE_ALLELE = "Reference_Allele"; - public static final String TUMOR_SEQ_ALLELE_1 = "Tumor_Seq_Allele1"; - public static final String TUMOR_SEQ_ALLELE_2 = "Tumor_Seq_Allele2"; - public static final String DBSNP_RS = "dbSNP_RS"; - public static final String DBSNP_VAL_STATUS = "dbSNP_Val_Status"; - public static final String TUMOR_SAMPLE_BARCODE = "Tumor_Sample_Barcode"; - public static final String MATCHED_NORM_SAMPLE_BARCODE = "Matched_Norm_Sample_Barcode"; - public static final String MATCH_NORM_SEQ_ALLELE1 = "Match_Norm_Seq_Allele1"; - public static final String MATCH_NORM_SEQ_ALLELE2 = "Match_Norm_Seq_Allele2"; - public static final String TUMOR_VALIDATION_ALLELE1 = "Tumor_Validation_Allele1"; - public static final String TUMOR_VALIDATION_ALLELE2 = "Tumor_Validation_Allele2"; - public static final String MATCH_NORM_VALIDATION_ALLELE1 = "Match_Norm_Validation_Allele1"; - public static final String MATCH_NORM_VALIDATION_ALLELE2 = "Match_Norm_Validation_Allele2"; - public static final String VERIFICATION_STATUS = "Verification_Status"; - public static final String VALIDATION_STATUS = "Validation_Status"; - public static final String MUTATION_STATUS = "Mutation_Status"; - public static final String SEQUENCING_PHASE = "Sequencing_Phase"; - public static final String SEQUENCE_SOURCE = "Sequence_Source"; - public static final String VALIDATION_METHOD = "Validation_Method"; - public static final String SCORE = "Score"; - public static final String BAM_FILE = "BAM_File"; - public static final String SEQUENCER = "Sequencer"; - - // non-standard columns - public static final String AMINO_ACID_CHANGE = "Amino_Acid_Change"; - - // allele frequency columns (non-standard) - public static final String T_REF_COUNT = "t_ref_count"; - public static final String T_ALT_COUNT = "t_alt_count"; - public static final String N_REF_COUNT = "n_ref_count"; - public static final String N_ALT_COUNT = "n_alt_count"; - public static final String I_T_REF_COUNT = "i_t_ref_count"; - public static final String AD_REF = "AD_Ref"; - public static final String I_T_ALT_COUNT = "i_t_alt_count"; - public static final String AD_ALT = "AD_Alt"; - public static final String NORM_AD_REF = "Norm_AD_Ref"; - public static final String NORM_AD_ALT = "Norm_AD_Alt"; - public static final String T_TOT_COV = "TTotCov"; - public static final String T_VAR_COV = "TVarCov"; - public static final String N_TOT_COV = "NTotCov"; - public static final String N_VAR_COV = "NVarCov"; - public static final String TUMOR_DEPTH = "tumor_depth"; - public static final String TUMOR_VAF = "tumor_vaf"; - public static final String NORMAL_DEPTH = "normal_depth"; - public static final String NORMAL_VAF = "normal_vaf"; - - // custom annotator column names - public static final String PROTEIN_CHANGE = "HGVSp_Short"; - public static final String CODONS = "Codons"; - public static final String SWISSPROT = "SWISSPROT"; - public static final String REFSEQ = "RefSeq"; - public static final String PROTEIN_POSITION = "Protein_position"; - - // oncotator column names - public static final String ONCOTATOR_VARIANT_CLASSIFICATION = "ONCOTATOR_VARIANT_CLASSIFICATION"; - public static final String ONCOTATOR_REFSEQ_MRNA_ID = "ONCOTATOR_REFSEQ_MRNA_ID"; - public static final String ONCOTATOR_UNIPROT_ACCESSION = "ONCOTATOR_UNIPROT_ACCESSION"; - public static final String ONCOTATOR_CODON_CHANGE = "ONCOTATOR_CODON_CHANGE"; - public static final String ONCOTATOR_PROTEIN_POS_START = "ONCOTATOR_PROTEIN_POS_START"; - public static final String ONCOTATOR_PROTEIN_POS_END = "ONCOTATOR_PROTEIN_POS_END"; - - // custom filtering of passenger and driver mutations column names - public static final String DRIVER_FILTER = "cbp_driver"; - public static final String DRIVER_FILTER_ANNOTATION = "cbp_driver_annotation"; - public static final String DRIVER_TIERS_FILTER = "cbp_driver_tiers"; - public static final String DRIVER_TIERS_FILTER_ANNOTATION = "cbp_driver_tiers_annotation"; - - // standard MAF column indices - private int chrIndex = -1; // CHR - private int ncbiIndex = -1; // NCBI_BUILD - private int startPositionIndex = -1; // START_POSITION - private int endPositionIndex = -1; // END_POSITION - private int hugoGeneSymbolIndex = -1; - private int entrezGeneIdIndex = -1; // ENTREZ_GENE_ID - private int referenceAlleleIndex = -1; // REFERENCE_ALLELE - private int variantClassificationIndex = -1; // MUTATION_TYPE - private int variantTypeIndex = -1; // VARIANT_TYPE - private int centerIndex = -1; // CENTER - private int strandIndex = -1; // STRAND - private int tumorSeqAllele1Index = -1; // TUMOR_SEQ_ALLELE1 - private int tumorSeqAllele2Index = -1; // TUMOR_SEQ_ALLELE1 - private int dbSNPIndex = -1; // DB_SNP_RS - private int tumorSampleIndex = -1; - private int mutationStatusIndex = -1; // MUTATION_STATUS - private int validationStatusIndex = -1; // VALIDATION_STATUS - private int sequencerIndex = -1; // SEQUENCER - private int dbSnpValStatusIndex = -1; // DB_SNP_VAL_STATUS - private int matchedNormSampleBarcodeIndex = -1; // MATCHED_NORM_SAMPLE_BARCODE - private int matchNormSeqAllele1Index = -1; // MATCH_NORM_SEQ_ALLELE1 - private int matchNormSeqAllele2Index = -1; // MATCH_NORM_SEQ_ALLELE2 - private int tumorValidationAllele1Index = -1; // TUMOR_VALIDATION_ALLELE1 - private int tumorValidationAllele2Index = -1; // TUMOR_VALIDATION_ALLELE2 - private int matchNormValidationAllele1Index = -1; // MATCH_NORM_VALIDATION_ALLELE1 - private int matchNormValidationAllele2Index = -1; // MATCH_NORM_VALIDATION_ALLELE2 - private int verificationStatusIndex = -1; // VERIFICATION_STATUS - private int sequencingPhaseIndex = -1; // SEQUENCING_PHASE - private int sequenceSourceIndex = -1; // SEQUENCE_SOURCE - private int validationMethodIndex = -1; // VALIDATION_METHOD - private int scoreIndex = -1; // SCORE - private int bamFileIndex = -1; // BAM_FILE - private int aminoAcidChangeIndex = -1; - - // Allele Frequency Columns - private int tumorAltCountIndex = -1; // TUMOR_ALT_COUNT - private int tumorRefCountIndex = -1; // TUMOR_REF_COUNT - private int normalAltCountIndex = -1; // NORMAL_ALT_COUNT - private int normalRefCountIndex = -1; // NORMAL_REF_COUNT - private int tTotCovIndex = -1; - private int tVarCovIndex = -1; - private int nTotCovIndex = -1; - private int nVarCovIndex = -1; - private int tumorDepthIndex = -1; - private int tumorVafIndex = -1; - private int normalDepthIndex = -1; - private int normalVafIndex = -1; - - // default Oncotator column indices - private int oncoVariantClassificationIndex = -1; - private int oncoRefseqMrnaIdIndex = -1; - private int oncoUniprotAccessionIndex = -1; - private int oncoCodonChangeIndex = -1; - private int oncoProteinPosStartIndex = -1; - private int oncoProteinPosEndIndex = -1; - - // Mutation Assessor column indices - private int maFImpactIndex = -1; // MA:FImpact - private int maFisIndex = -1; // MA:FIS - private int maLinkVarIndex = -1; // MA:link.var - private int maLinkMsaIndex = -1; // MA:link.MSA - private int maLinkPdbIndex = -1; // MA:link.PDB - - // custom filtering of passenger and driver mutations column indices - private int driverIndex = -1; //cbp_driver - private int driverAnnIndex = -1; //cbp_driver_annotation - private int driverTiersIndex = -1; //cbp_driver_tiers - private int driverTiersAnnIndex = -1; //cbp_driver_tiers_annotation - - // number of headers in the header line - private int headerCount; - - // mapping for all column names (both standard and custom columns) - private HashMap columnIndexMap; - private final NamespaceColumnParser namespaceColumnParser; - - public MafUtil(String headerLine) { - this(headerLine, null); - } - /** - * Constructor. - * - * @param headerLine Header Line. - */ - public MafUtil(String headerLine, Set namespaces) { - - // init column index map - this.columnIndexMap = new HashMap(); - - // split header names - String[] parts = headerLine.split("\t"); - - // update header count - this.headerCount = parts.length; - - // find required header indices - for (int i=0; i> getNamespaceIndexMap() { - return this.namespaceColumnParser.getNamespaceColumnIndexMap(); - } - - private void fixEndPointForInsertion(MafRecord record) { - if (record.getReferenceAllele().equals("-")) { - record.setEndPosition(record.getStartPosition()+1); - } - } - - public int getChrIndex() { - return chrIndex; - } - - public int getNcbiIndex() { - return ncbiIndex; - } - - public int getStartPositionIndex() { - return startPositionIndex; - } - - public int getEndPositionIndex() { - return endPositionIndex; - } - - public int getHugoGeneSymbolIndex() { - return hugoGeneSymbolIndex; - } - - public int getEntrezGeneIdIndex() { - return entrezGeneIdIndex; - } - - public int getReferenceAlleleIndex() { - return referenceAlleleIndex; - } - - public int getVariantClassificationIndex() { - return variantClassificationIndex; - } - - public int getVariantTypeIndex() { - return variantTypeIndex; - } - - public int getCenterIndex() { - return centerIndex; - } - - public int getStrandIndex() { - return strandIndex; - } - - public int getTumorSeqAllele1Index() { - return tumorSeqAllele1Index; - } - - public int getTumorSeqAllele2Index() { - return tumorSeqAllele2Index; - } - - public int getDbSNPIndex() { - return dbSNPIndex; - } - - public int getTumorSampleIndex() { - return tumorSampleIndex; - } - - public int getMutationStatusIndex() { - return mutationStatusIndex; - } - - public int getValidationStatusIndex() { - return validationStatusIndex; - } - - public int getSequencerIndex() { - return sequencerIndex; - } - - public int getDbSnpValStatusIndex() { - return dbSnpValStatusIndex; - } - - public int getMatchedNormSampleBarcodeIndex() { - return matchedNormSampleBarcodeIndex; - } - - public int getMatchNormSeqAllele1Index() { - return matchNormSeqAllele1Index; - } - - public int getMatchNormSeqAllele2Index() { - return matchNormSeqAllele2Index; - } - - public int getTumorValidationAllele1Index() { - return tumorValidationAllele1Index; - } - - public int getTumorValidationAllele2Index() { - return tumorValidationAllele2Index; - } - - public int getMatchNormValidationAllele1Index() { - return matchNormValidationAllele1Index; - } - - public int getMatchNormValidationAllele2Index() { - return matchNormValidationAllele2Index; - } - - public int getVerificationStatusIndex() { - return verificationStatusIndex; - } - - public int getSequencingPhaseIndex() { - return sequencingPhaseIndex; - } - - public int getSequenceSourceIndex() { - return sequenceSourceIndex; - } - - public int getValidationMethodIndex() { - return validationMethodIndex; - } - - public int getScoreIndex() { - return scoreIndex; - } - - public int getBamFileIndex() { - return bamFileIndex; - } - - public int getAminoAcidChange() { - return aminoAcidChangeIndex; - } - - public int getTumorAltCountIndex() { - return tumorAltCountIndex; - } - - public int getTumorRefCountIndex() { - return tumorRefCountIndex; - } - - public int getNormalAltCountIndex() { - return normalAltCountIndex; - } - - public int getNormalRefCountIndex() { - return normalRefCountIndex; - } - - public int getTumorTotCovIndex() { - return tTotCovIndex; - } - - public int getTumorVarCovIndex() { - return tVarCovIndex; - } - - public int getOncoVariantClassificationIndex() { - return oncoVariantClassificationIndex; - } - - public int getMaFImpactIndex() { - return maFImpactIndex; - } - - public int getMaFisIndex() { - return maFisIndex; - } - - public int getMaLinkVarIndex() { - return maLinkVarIndex; - } - - public int getMaLinkMsaIndex() { - return maLinkMsaIndex; - } - - public int getMaLinkPdbIndex() { - return maLinkPdbIndex; - } - - public int getOncoRefseqMrnaIdIndex() { - return oncoRefseqMrnaIdIndex; - } - - public int getOncoCodonChangeIndex() { - return oncoCodonChangeIndex; - } - - public int getOncoUniprotAccessionIndex() { - return oncoUniprotAccessionIndex; - } - - public int getOncoProteinPosStartIndex() { - return oncoProteinPosStartIndex; - } - - public int getOncoProteinPosEndIndex() { - return oncoProteinPosEndIndex; - } - - public int getDriverIndex() { - return driverIndex; - } - - public int getDriverAnnIndex() { - return driverAnnIndex; - } - - public int getDriverTiersIndex() { - return driverTiersIndex; - } - - public int getDriverTiersAnnIndex() { - return driverTiersAnnIndex; - } - - public int getColumnIndex(String colName) { - Integer index = this.columnIndexMap.get(colName.toLowerCase()); - - if (index == null) { - index = -1; - } - - return index; - } - - public int getHeaderCount() { - return headerCount; - } - - - // Static Utility Methods - - /** - * Generates a key for the given MAF record. The generated key - * is in the form of : - * [chromosome]_[startPosition]_[endPosition]_[referenceAllele]_[tumorAllele] - * - * This method returns null, if tumor allele cannot be determined for the - * given record. - * - * @param record MAF record representing a single line in a MAF - * @return key for the given record - */ - public static String generateKey(MafRecord record) { - // According to the MAF specification a chromosome number - // should not have "chr" prefix. But this is not the case in practice, - // so get rid of the starting "chr". - String chr = record.getChr().replaceAll("chr", ""); - - Long start = record.getStartPosition(); - Long end = record.getEndPosition(); - String refAllele = record.getReferenceAllele(); - String tumAllele = null; - - // determine tumor allele: take the one that is different from - // the reference allele - if (!refAllele.equalsIgnoreCase(record.getTumorSeqAllele1())) { - tumAllele = record.getTumorSeqAllele1(); - } else if (!refAllele.equalsIgnoreCase(record.getTumorSeqAllele2())) { - tumAllele = record.getTumorSeqAllele2(); - } - - String key = null; - - // update key if tumor allele is valid - if (tumAllele != null) { - key = chr + "_" + start + "_" + end + "_" + refAllele + "_" + tumAllele; - } - - return key; - } - - /** - * Resolve tumor seq allele given a reference allele, tumor seq allele1, and tumor seq allele2. - * Valid nucleotide patterns will be preferred over "-" in cases where there is ambiguity over which tumor seq allele value (1 or 2) to use. - * @param referenceAllele - * @param tumorSeqAllele1 - * @param tumorSeqAllele2 - * @return - * - * @author angelicaochoa - */ - public static String resolveTumorSeqAllele(String referenceAllele, String tumorSeqAllele1, String tumorSeqAllele2) { - // sanity check tumor seq allele 1 and 2 for valid/non-null values - if ((Strings.isNullOrEmpty(tumorSeqAllele1) || tumorSeqAllele1.equalsIgnoreCase("NA")) && (Strings.isNullOrEmpty(tumorSeqAllele2) || tumorSeqAllele2.equalsIgnoreCase("NA"))) { - return ""; // cannot resolve this case - } - if (Strings.isNullOrEmpty(tumorSeqAllele1) || tumorSeqAllele1.equals("NA") || tumorSeqAllele1.equals(referenceAllele)) { - return tumorSeqAllele2; - } else if (Strings.isNullOrEmpty(tumorSeqAllele2) || tumorSeqAllele2.equals("NA") || tumorSeqAllele2.equals(referenceAllele)) { - return tumorSeqAllele1; - } else if (variantContainsAmbiguousTumorSeqAllele(referenceAllele, tumorSeqAllele1, tumorSeqAllele2)) { - return tumorSeqAllele2.equals("-") ? tumorSeqAllele1 : tumorSeqAllele2; - } else { - return tumorSeqAllele1; - } - } - - /** - * Determines where record contains both a valid nucleotide pattern and "-". - * Helper function for resolveTumorSeqAllele(...) - * @param referenceAllele - * @param tumorSeqAllele1 - * @param tumorSeqAllele2 - * @return - * - * @author angelicaochoa - */ - public static boolean variantContainsAmbiguousTumorSeqAllele(String referenceAllele, String tumorSeqAllele1, String tumorSeqAllele2) { - // tumor seq allele 1 or 2 is null type or equal to ref allele - return false - if ((Strings.isNullOrEmpty(tumorSeqAllele1) || tumorSeqAllele1.equals("NA") || tumorSeqAllele1.equals(referenceAllele)) || - (Strings.isNullOrEmpty(tumorSeqAllele2) || tumorSeqAllele2.equals("NA") || tumorSeqAllele2.equals(referenceAllele))) { - return false; - } - // returns true if both '-' and a valid nucleotide pattern present in allele 1 and 2 - return ((tumorSeqAllele1.equals("-") || tumorSeqAllele2.equals("-")) && - (validNucleotidesPattern.matcher(tumorSeqAllele1.toUpperCase()).matches() || validNucleotidesPattern.matcher(tumorSeqAllele2.toUpperCase()).matches())); - } - - public NamespaceColumnParser getNamespaceColumnParser() { - return namespaceColumnParser; - } - -} - diff --git a/maf/src/main/java/org/mskcc/cbio/maf/NamespaceColumnParser.java b/maf/src/main/java/org/mskcc/cbio/maf/NamespaceColumnParser.java deleted file mode 100644 index 574c71b88f9..00000000000 --- a/maf/src/main/java/org/mskcc/cbio/maf/NamespaceColumnParser.java +++ /dev/null @@ -1,106 +0,0 @@ -package org.mskcc.cbio.maf; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.*; - -import java.util.*; - -import static org.mskcc.cbio.maf.ValueTypeUtil.isDouble; -import static org.mskcc.cbio.maf.ValueTypeUtil.isFloat; -import static org.mskcc.cbio.maf.ValueTypeUtil.isInt; - -public class NamespaceColumnParser { - - public static final String NAMESPACE_DELIMITER = "."; - public static final String NAMESPACE_DELIMITER_REGEX = "\\."; - - private Map> namespaceIndexMap; - private static ObjectMapper mapper; - - public NamespaceColumnParser(Set namespaces, String[] parts) { - this.namespaceIndexMap = new HashMap<>(); - this.mapper = new ObjectMapper(); - findNamespaceHeaders(namespaces, parts); - } - - public Map> getNamespaceColumnIndexMap() { - return namespaceIndexMap; - } - - private void findNamespaceHeaders( - Set namespaces, - String[] parts - ) { - // find required header indices - for (int i = 0; i < parts.length; i++) { - String header = parts[i]; - if (namespaces == null || namespaces.isEmpty()) { - continue; - } - int columnIndex = i; - namespaces - .stream() - // Perform a case-insensitive match of namespace in meta file with the column name. - .filter(namespace -> header.toLowerCase().startsWith(namespace.toLowerCase( - Locale.ROOT) + NAMESPACE_DELIMITER)) - .findFirst() - .ifPresent(namespace -> { - String columnName = header.split(NAMESPACE_DELIMITER_REGEX)[1]; - // For legacy reasons perform lower-case transformation for ASCN column names. - if (namespace.equalsIgnoreCase("ascn")) { - columnName = columnName.toLowerCase(); - } - // Key the namespaces with the format (upper-/lowercase) specified in the meta file. - Map nsKeyIndexMap = this.namespaceIndexMap.getOrDefault(namespace, new HashMap<>()); - nsKeyIndexMap.put(columnName, columnIndex); - this.namespaceIndexMap.put(namespace, nsKeyIndexMap); - }); - } - } - - public Map> parseCustomNamespaces(String[] parts) { - // extract namespace key-value pairs for json annotation support - Map> recordNamespaceAnnotationJsonMap = new HashMap<>(); - if (this.namespaceIndexMap.isEmpty()) { - return null; - } - for (Map.Entry> nsKeyIndexMap : namespaceIndexMap.entrySet()) { - String namespace = nsKeyIndexMap.getKey(); - // construct map of the key-value pairs from the record - Map namespaceKeyValueMappings = new HashMap<>(); - for (Map.Entry nsKeyIndexPairs : nsKeyIndexMap.getValue().entrySet()) { - String keyName = nsKeyIndexPairs.getKey(); - Integer keyIndex = nsKeyIndexPairs.getValue(); - String stringValue = TabDelimitedFileUtil.getPartStringAllowEmptyAndNA(keyIndex, parts); - namespaceKeyValueMappings.put(keyName, parseNamespaceValue(stringValue)); - } - // update namespace map with the key-value pairs extracted from record - recordNamespaceAnnotationJsonMap.put(namespace, namespaceKeyValueMappings); - } - return recordNamespaceAnnotationJsonMap; - } - - public static Object parseNamespaceValue(String stringValue) { - if (stringValue == null || stringValue.isEmpty()) { - return null; - } else if (isInt(stringValue)) { - return Integer.parseInt(stringValue); - } else if (isFloat(stringValue)) { - return Float.parseFloat(stringValue); - } else if (isDouble(stringValue)) { - return Double.parseDouble(stringValue); - } - return stringValue; - } - - /** - * Map to string, or return `null` (instead of `"null"`) when null - */ - public String writeValueAsString(Map> namespaces) throws JsonProcessingException { - if (namespaces == null || namespaces.isEmpty()) { - return null; - } - return NamespaceColumnParser.mapper.writeValueAsString(namespaces); - } - -} diff --git a/maf/src/main/java/org/mskcc/cbio/maf/TabDelimitedFileUtil.java b/maf/src/main/java/org/mskcc/cbio/maf/TabDelimitedFileUtil.java deleted file mode 100644 index 18e1f1648da..00000000000 --- a/maf/src/main/java/org/mskcc/cbio/maf/TabDelimitedFileUtil.java +++ /dev/null @@ -1,245 +0,0 @@ -/* - * Copyright (c) 2015 - 2022 Memorial Sloan Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.mskcc.cbio.maf; - -/** - * Generic utility class providing simple utility functions for tab - * delimited data files. - * - * @author Selcuk Onur Sumer - */ -public class TabDelimitedFileUtil -{ - public final static String NA_STRING = "NA"; - public final static long NA_LONG = Long.MIN_VALUE; - // TODO use MIN instead of -1, we may have fields with negative values - public final static int NA_INT = -1; - public final static float NA_FLOAT = -1; - - /** - * If field is not found in header or data line, or is empty, it just returns empty - * field value "NA". - * - * @param index: index of the column to parse. Can be set to -1 if the column was not found in - * header. This method will return "NA" in this case. - * @param parts: the data line parts, i.e. the line split by separator. - * @return : the value as is, or "NA" if column was empty, not present in file (indicated by index=-1), - * or not present in data line (parts parameter above). - */ - public static String getPartString(int index, String[] parts) - { - try - { - if (parts[index].length() == 0) - { - return NA_STRING; - } - else - { - return parts[index]; - } - } - catch (ArrayIndexOutOfBoundsException e) - { - return NA_STRING; - } - } - - /** - * Return the trimmed string from the column, or an empty string if -1. - * - * Require the column to exist before the end of the data line. This can - * be used instead of getPartString() if NA may be a meaningful value and - * the file is expected to have been validated. - * - * @param index : index of the column to parse. May be set to -1 if the - * column was not found in header, to return "". - * @param parts: the data line parts, i.e. the line split by separator. - * - * @return : the value as is, or "" if the index is -1. - */ - public static String getPartStringAllowEmpty(int index, String[] parts) - { - try - { - if (index < 0) { - //return empty string: - return ""; - } - //else just return as is, trimmed version: - return parts[index].trim(); - } - catch (ArrayIndexOutOfBoundsException e) - { - // all lines must have the same number of columns, and the - // validation script should never allow this to reach the loader - throw new RuntimeException( - "Unexpected error while parsing column nr: " + (index+1), - e); - } - } - - /** - * Return the trimmed string from the column, or an empty string if -1 - * or "NA". - * - * Require the column to exist before the end of the data line. - * - * @param index : index of the column to parse. May be set to -1 if the - * column was not found in header, to return "". - * @param parts: the data line parts, i.e. the line split by separator. - * - * @return : the value as is, or "" if the index is -1. - */ - public static String getPartStringAllowEmptyAndNA(int index, String[] parts) - { - String value = getPartStringAllowEmpty(index, parts); - if (value.equals(NA_STRING)) { - value = ""; - } - return value; -} - - public static Long getPartLong(int index, String[] parts) { - try { - String part = parts[index]; - return Long.parseLong(part); - } catch (ArrayIndexOutOfBoundsException e) { - return NA_LONG; - } catch (NumberFormatException e) { - return NA_LONG; - } - } - - // This method does not call Integer.parseInt() as one might expect. - // Presumably this is to allow the convertion of strings like "6.2" to "6". - // The method previously called (int)Float.parseFloat() but floats - // reserve 23 bits for the mantissa and ints are 32 bits so precision - // was lost parsing "138536968" which was converted to 138536960. - // Now we call (int)Double.parseDouble() because double allocates - // 52 bits for the mantissa. Note getPartLong calls Long.parseLong() - // when this does not call Integer.parseInt() which seems inconsistent. - public static Integer getPartInt(int index, String[] parts) - { - try { - String part = parts[index]; - return (int)(Double.parseDouble(part)); - } catch (ArrayIndexOutOfBoundsException e) { - return NA_INT; - } catch (NumberFormatException e) { - return NA_INT; - } - } - - public static Float getPartPercentage(int index, String[] parts) - { - try { - float result = NA_FLOAT; - String part = parts[index]; - if (part.contains("%")) { - result = Float.parseFloat(part.replace("%", "")) / Float.parseFloat("100"); - } else { - result = Float.parseFloat(part); - } - return result; - } catch (ArrayIndexOutOfBoundsException e) { - return NA_FLOAT; - } catch (NumberFormatException e) { - return NA_FLOAT; - } - } - - public static Float getPartFloat(int index, String[] parts) - { - try { - String part = parts[index]; - return Float.parseFloat(part); - } catch (ArrayIndexOutOfBoundsException e) { - return NA_FLOAT; - } catch (NumberFormatException e) { - return NA_FLOAT; - } - } - - // returning MIN_VALUE instead of NA_FLOAT - // use this one if -1 is not a safe "NA" value. - public static Float getPartFloat2(int index, String[] parts) - { - try { - String part = parts[index]; - return Float.parseFloat(part); - } catch (ArrayIndexOutOfBoundsException e) { - return Float.MIN_VALUE; - } catch (NumberFormatException e) { - return Float.MIN_VALUE; - } - } - - public static String adjustDataLine(String dataLine, - int headerCount) - { - String line = dataLine; - String[] parts = line.split("\t", -1); - - // diff should be zero if (# of headers == # of data cols) - int diff = headerCount - parts.length; - - // number of header columns are more than number of data columns - if (diff > 0) - { - // append appropriate number of tabs - for (int i = 0; i < diff; i++) - { - line += "\t"; - } - } - // number of data columns are more than number of header columns - else if (diff < 0) - { - line = ""; - - // just truncate the data (discard the trailing columns) - for (int i = 0; i < headerCount; i++) - { - line += parts[i]; - - if (i < headerCount - 1) - { - line += "\t"; - } - } - } - - return line; - } -} diff --git a/maf/src/main/java/org/mskcc/cbio/maf/ValueTypeUtil.java b/maf/src/main/java/org/mskcc/cbio/maf/ValueTypeUtil.java deleted file mode 100644 index 476b171460a..00000000000 --- a/maf/src/main/java/org/mskcc/cbio/maf/ValueTypeUtil.java +++ /dev/null @@ -1,89 +0,0 @@ -package org.mskcc.cbio.maf; - -public class ValueTypeUtil { - - private ValueTypeUtil() { - throw new IllegalStateException("This is a utility class. Do not instantiate."); - } - - public static boolean isInt(String value) { - if (value == null) { - return false; - } - try { - Integer.parseInt(value); - } catch (NumberFormatException e) { - return false; - } - return true; - } - - public static boolean isFloat(String value) { - if (value == null) { - return false; - } - try { - Float.parseFloat(value); - } catch (NumberFormatException e) { - return false; - } - return true; - } - - public static boolean isDouble(String value) { - if (value == null) { - return false; - } - try { - Double.parseDouble(value); - } catch (NumberFormatException e) { - return false; - } - return true; - } - - public static Float toFloat(Object value) { - if (value == null) { - return null; - } - if (value instanceof Integer) { - return ((Integer) value).floatValue(); - } - if (value instanceof Float) { - return (Float) value; - } - if (value instanceof Long) { - return ((Long) value).floatValue(); - } - if (value instanceof Double) { - return ((Double) value).floatValue(); - } - if (value instanceof String) { - return Float.parseFloat((String) value); - } - throw new RuntimeException("Object type not covered by toFloat method. Value is: " + value.toString()); - } - - public static Integer toInt(Object value) { - if (value == null) { - return null; - } - if (value instanceof Integer) { - return (Integer) value; - } - if (value instanceof Float) { - return Math.round((Float) value); - } - if (value instanceof Long) { - return ((Long) value).intValue(); - } - if (value instanceof Double) { - return Math.toIntExact(Math.round((Double) value)); - } - if (value instanceof String) { - return Integer.parseInt((String) value); - } - throw new RuntimeException("Object type not covered by toInt method. Value is: " + value.toString()); - } - -} diff --git a/model/pom.xml b/model/pom.xml deleted file mode 100644 index 65ac7e41ba9..00000000000 --- a/model/pom.xml +++ /dev/null @@ -1,30 +0,0 @@ - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - model - - - - com.fasterxml.jackson.core - jackson-databind - ${jackson.version} - - - io.springfox - springfox-oas - - - org.hibernate - hibernate-validator - - - - diff --git a/model/src/main/java/org/cbioportal/model/CancerStudy.java b/model/src/main/java/org/cbioportal/model/CancerStudy.java deleted file mode 100644 index 4d0b7b94935..00000000000 --- a/model/src/main/java/org/cbioportal/model/CancerStudy.java +++ /dev/null @@ -1,242 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import java.util.Date; -import javax.validation.constraints.NotNull; - -public class CancerStudy implements ReadPermission, Serializable { - - private Integer cancerStudyId; - @NotNull - private String cancerStudyIdentifier; - private String typeOfCancerId; - private String name; - private String description; - private Boolean publicStudy; - private String pmid; - private String citation; - private String groups; - private Integer status; - private Date importDate; - private TypeOfCancer typeOfCancer; - private Integer allSampleCount; - private Integer sequencedSampleCount; - private Integer cnaSampleCount; - private Integer mrnaRnaSeqSampleCount; - private Integer mrnaRnaSeqV2SampleCount; - private Integer mrnaMicroarraySampleCount; - private Integer miRnaSampleCount; - private Integer methylationHm27SampleCount; - private Integer rppaSampleCount; - private Integer massSpectrometrySampleCount; - private Integer completeSampleCount; - private String referenceGenome; - private Boolean readPermission = true; - private Integer treatmentCount; - - public Integer getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(Integer cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getCancerStudyIdentifier() { - return cancerStudyIdentifier; - } - - public void setCancerStudyIdentifier(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - - public String getTypeOfCancerId() { - return typeOfCancerId; - } - - public void setTypeOfCancerId(String typeOfCancerId) { - this.typeOfCancerId = typeOfCancerId; - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public Boolean getPublicStudy() { - return publicStudy; - } - - public void setPublicStudy(Boolean publicStudy) { - this.publicStudy = publicStudy; - } - - public String getPmid() { - return pmid; - } - - public void setPmid(String pmid) { - this.pmid = pmid; - } - - public String getCitation() { - return citation; - } - - public void setCitation(String citation) { - this.citation = citation; - } - - public String getGroups() { - return groups; - } - - public void setGroups(String groups) { - this.groups = groups; - } - - public Integer getStatus() { - return status; - } - - public void setStatus(Integer status) { - this.status = status; - } - - public Date getImportDate() { - return importDate; - } - - public void setImportDate(Date importDate) { - this.importDate = importDate; - } - - public TypeOfCancer getTypeOfCancer() { - return typeOfCancer; - } - - public void setTypeOfCancer(TypeOfCancer typeOfCancer) { - this.typeOfCancer = typeOfCancer; - } - - public Integer getAllSampleCount() { - return allSampleCount; - } - - public void setAllSampleCount(Integer allSampleCount) { - this.allSampleCount = allSampleCount; - } - - public Integer getSequencedSampleCount() { - return sequencedSampleCount; - } - - public void setSequencedSampleCount(Integer sequencedSampleCount) { - this.sequencedSampleCount = sequencedSampleCount; - } - - public Integer getCnaSampleCount() { - return cnaSampleCount; - } - - public void setCnaSampleCount(Integer cnaSampleCount) { - this.cnaSampleCount = cnaSampleCount; - } - - public Integer getMrnaRnaSeqSampleCount() { - return mrnaRnaSeqSampleCount; - } - - public void setMrnaRnaSeqSampleCount(Integer mrnaRnaSeqSampleCount) { - this.mrnaRnaSeqSampleCount = mrnaRnaSeqSampleCount; - } - - public Integer getMrnaRnaSeqV2SampleCount() { - return mrnaRnaSeqV2SampleCount; - } - - public void setMrnaRnaSeqV2SampleCount(Integer mrnaRnaSeqV2SampleCount) { - this.mrnaRnaSeqV2SampleCount = mrnaRnaSeqV2SampleCount; - } - - public Integer getMrnaMicroarraySampleCount() { - return mrnaMicroarraySampleCount; - } - - public void setMrnaMicroarraySampleCount(Integer mrnaMicroarraySampleCount) { - this.mrnaMicroarraySampleCount = mrnaMicroarraySampleCount; - } - - public Integer getMiRnaSampleCount() { - return miRnaSampleCount; - } - - public void setMiRnaSampleCount(Integer miRnaSampleCount) { - this.miRnaSampleCount = miRnaSampleCount; - } - - public Integer getMethylationHm27SampleCount() { - return methylationHm27SampleCount; - } - - public void setMethylationHm27SampleCount(Integer methylationHm27SampleCount) { - this.methylationHm27SampleCount = methylationHm27SampleCount; - } - - public Integer getRppaSampleCount() { - return rppaSampleCount; - } - - public void setRppaSampleCount(Integer rppaSampleCount) { - this.rppaSampleCount = rppaSampleCount; - } - - public Integer getCompleteSampleCount() { - return completeSampleCount; - } - - public void setCompleteSampleCount(Integer completeSampleCount) { - this.completeSampleCount = completeSampleCount; - } - - public Integer getMassSpectrometrySampleCount() { - return massSpectrometrySampleCount; - } - - public void setMassSpectrometrySampleCount(Integer massSpectrometrySampleCount) { - this.massSpectrometrySampleCount = massSpectrometrySampleCount; - } - - public String getReferenceGenome() { return referenceGenome; } - - public void setReferenceGenome(String referenceGenome) { this.referenceGenome = referenceGenome; } - - @Override - public void setReadPermission(Boolean permission) { - this.readPermission = permission; - } - - @Override - public Boolean getReadPermission() { - return readPermission; - } - - public Integer getTreatmentCount() { - return treatmentCount; - } - - public void setTreatmentCount(Integer treatmentCount) { - this.treatmentCount = treatmentCount; - } -} diff --git a/model/src/main/java/org/cbioportal/model/ClinicalAttribute.java b/model/src/main/java/org/cbioportal/model/ClinicalAttribute.java deleted file mode 100644 index 9dfe2cb0302..00000000000 --- a/model/src/main/java/org/cbioportal/model/ClinicalAttribute.java +++ /dev/null @@ -1,85 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import javax.validation.constraints.NotNull; - -public class ClinicalAttribute implements Serializable { - - @NotNull - private String attrId; - @NotNull - private String displayName; - private String description; - private String datatype; - @NotNull - private Boolean patientAttribute; - private String priority; - private Integer cancerStudyId; - @NotNull - private String cancerStudyIdentifier; - - public String getAttrId() { - return attrId; - } - - public void setAttrId(String attrId) { - this.attrId = attrId; - } - - public String getDisplayName() { - return displayName; - } - - public void setDisplayName(String displayName) { - this.displayName = displayName; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public String getDatatype() { - return datatype; - } - - public void setDatatype(String datatype) { - this.datatype = datatype; - } - - public Boolean getPatientAttribute() { - return patientAttribute; - } - - public void setPatientAttribute(Boolean patientAttribute) { - this.patientAttribute = patientAttribute; - } - - public String getPriority() { - return priority; - } - - public void setPriority(String priority) { - this.priority = priority; - } - - public Integer getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(Integer cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getCancerStudyIdentifier() { - return cancerStudyIdentifier; - } - - public void setCancerStudyIdentifier(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - -} diff --git a/model/src/main/java/org/cbioportal/model/ClinicalData.java b/model/src/main/java/org/cbioportal/model/ClinicalData.java deleted file mode 100644 index b7118588297..00000000000 --- a/model/src/main/java/org/cbioportal/model/ClinicalData.java +++ /dev/null @@ -1,80 +0,0 @@ -package org.cbioportal.model; - -import javax.validation.constraints.NotNull; - -public class ClinicalData extends UniqueKeyBase implements Binnable { - - private Integer internalId; - private String sampleId; - @NotNull - private String patientId; - @NotNull - private String studyId; - @NotNull - private String attrId; - private String attrValue; - private ClinicalAttribute clinicalAttribute; - - public Integer getInternalId() { - return internalId; - } - - public void setInternalId(Integer internalId) { - this.internalId = internalId; - } - - public String getSampleId() { - return sampleId; - } - - public void setSampleId(String sampleId) { - this.sampleId = sampleId; - } - - public String getPatientId() { - return patientId; - } - - public void setPatientId(String patientId) { - this.patientId = patientId; - } - - public String getStudyId() { - return studyId; - } - - public void setStudyId(String studyId) { - this.studyId = studyId; - } - - public String getAttrId() { - return attrId; - } - - public Boolean isPatientAttribute() { - if(clinicalAttribute == null) { - return null; - } - return this.clinicalAttribute.getPatientAttribute(); - } - - public void setAttrId(String attrId) { - this.attrId = attrId; - } - - public String getAttrValue() { - return attrValue; - } - - public void setAttrValue(String attrValue) { - this.attrValue = attrValue; - } - - public ClinicalAttribute getClinicalAttribute() { - return clinicalAttribute; - } - - public void setClinicalAttribute(ClinicalAttribute clinicalAttribute) { - this.clinicalAttribute = clinicalAttribute; - } -} diff --git a/model/src/main/java/org/cbioportal/model/ClinicalEvent.java b/model/src/main/java/org/cbioportal/model/ClinicalEvent.java deleted file mode 100644 index 6decf0b5415..00000000000 --- a/model/src/main/java/org/cbioportal/model/ClinicalEvent.java +++ /dev/null @@ -1,74 +0,0 @@ -package org.cbioportal.model; - -import java.util.List; -import javax.validation.constraints.NotNull; - -public class ClinicalEvent extends UniqueKeyBase { - - private Integer clinicalEventId; - @NotNull - private String studyId; - @NotNull - private String patientId; - @NotNull - private String eventType; - private Integer startDate; - private Integer stopDate; - private List attributes; - - public Integer getClinicalEventId() { - return clinicalEventId; - } - - public void setClinicalEventId(Integer clinicalEventId) { - this.clinicalEventId = clinicalEventId; - } - - public String getStudyId() { - return studyId; - } - - public void setStudyId(String studyId) { - this.studyId = studyId; - } - - public String getPatientId() { - return patientId; - } - - public void setPatientId(String patientId) { - this.patientId = patientId; - } - - public String getEventType() { - return eventType; - } - - public void setEventType(String eventType) { - this.eventType = eventType; - } - - public Integer getStartDate() { - return startDate; - } - - public void setStartDate(Integer startDate) { - this.startDate = startDate; - } - - public Integer getStopDate() { - return stopDate; - } - - public void setStopDate(Integer stopDate) { - this.stopDate = stopDate; - } - - public List getAttributes() { - return attributes; - } - - public void setAttributes(List attributes) { - this.attributes = attributes; - } -} diff --git a/model/src/main/java/org/cbioportal/model/DiscreteCopyNumberData.java b/model/src/main/java/org/cbioportal/model/DiscreteCopyNumberData.java deleted file mode 100644 index cbeb2862d16..00000000000 --- a/model/src/main/java/org/cbioportal/model/DiscreteCopyNumberData.java +++ /dev/null @@ -1,33 +0,0 @@ -package org.cbioportal.model; - -import com.fasterxml.jackson.annotation.JsonRawValue; -import io.swagger.annotations.ApiModelProperty; - -import java.io.Serializable; -import javax.validation.constraints.NotNull; - -public class DiscreteCopyNumberData extends Alteration implements Serializable { - @NotNull - private Integer alteration; - - @JsonRawValue - @ApiModelProperty(dataType = "java.util.Map") - private String annotationJson; - - public Integer getAlteration() { - return alteration; - } - - public void setAlteration(Integer alteration) { - this.alteration = alteration; - } - - public String getAnnotationJson() { - return annotationJson; - } - - public void setAnnotationJson(String annotationJson) { - this.annotationJson = annotationJson; - } - -} diff --git a/model/src/main/java/org/cbioportal/model/Gene.java b/model/src/main/java/org/cbioportal/model/Gene.java deleted file mode 100644 index 751dc7593fe..00000000000 --- a/model/src/main/java/org/cbioportal/model/Gene.java +++ /dev/null @@ -1,43 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import javax.validation.constraints.NotNull; - -public class Gene implements Serializable { - - @NotNull - private Integer geneticEntityId; - @NotNull - private Integer entrezGeneId; - @NotNull - private String hugoGeneSymbol; - private String type; - - public Integer getGeneticEntityId() { return geneticEntityId; } - - public void setGeneticEntityId(Integer geneticEntityId) { this.geneticEntityId = geneticEntityId; } - - public Integer getEntrezGeneId() { - return entrezGeneId; - } - - public void setEntrezGeneId(Integer entrezGeneId) { - this.entrezGeneId = entrezGeneId; - } - - public String getHugoGeneSymbol() { - return hugoGeneSymbol; - } - - public void setHugoGeneSymbol(String hugoGeneSymbol) { - this.hugoGeneSymbol = hugoGeneSymbol; - } - - public String getType() { - return type; - } - - public void setType(String type) { - this.type = type; - } -} diff --git a/model/src/main/java/org/cbioportal/model/GenePanel.java b/model/src/main/java/org/cbioportal/model/GenePanel.java deleted file mode 100644 index 3cbe1c58fa5..00000000000 --- a/model/src/main/java/org/cbioportal/model/GenePanel.java +++ /dev/null @@ -1,46 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import java.util.List; -import javax.validation.constraints.NotNull; - -public class GenePanel implements Serializable { - - private Integer internalId; - @NotNull - private String stableId; - private String description; - private List genes; - - public Integer getInternalId() { - return internalId; - } - - public void setInternalId(Integer internalId) { - this.internalId = internalId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public List getGenes() { - return genes; - } - - public void setGenes(List genes) { - this.genes = genes; - } -} diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayCategoricalEnrichment.java b/model/src/main/java/org/cbioportal/model/GenericAssayCategoricalEnrichment.java deleted file mode 100644 index 2fdb661cf38..00000000000 --- a/model/src/main/java/org/cbioportal/model/GenericAssayCategoricalEnrichment.java +++ /dev/null @@ -1,18 +0,0 @@ -package org.cbioportal.model; - -import javax.validation.constraints.NotNull; -import java.math.BigDecimal; - -public class GenericAssayCategoricalEnrichment extends GenericAssayEnrichment { - @NotNull - private BigDecimal qValue; - - public BigDecimal getqValue() { - return qValue; - } - - public void setqValue(BigDecimal qValue) { - this.qValue = qValue; - } - -} diff --git a/model/src/main/java/org/cbioportal/model/Gistic.java b/model/src/main/java/org/cbioportal/model/Gistic.java deleted file mode 100644 index 39b65fc7b5c..00000000000 --- a/model/src/main/java/org/cbioportal/model/Gistic.java +++ /dev/null @@ -1,98 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import java.math.BigDecimal; -import java.util.List; -import javax.validation.constraints.NotNull; - -public class Gistic implements Serializable { - - private Long gisticRoiId; - @NotNull - private String cancerStudyId; - @NotNull - private Integer chromosome; - @NotNull - private String cytoband; - @NotNull - private Integer widePeakStart; - @NotNull - private Integer widePeakEnd; - @NotNull - private BigDecimal qValue; - @NotNull - private Boolean amp; - private List genes; - - public Long getGisticRoiId() { - return gisticRoiId; - } - - public void setGisticRoiId(Long gisticRoiId) { - this.gisticRoiId = gisticRoiId; - } - - public String getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(String cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public Integer getChromosome() { - return chromosome; - } - - public void setChromosome(Integer chromosome) { - this.chromosome = chromosome; - } - - public String getCytoband() { - return cytoband; - } - - public void setCytoband(String cytoband) { - this.cytoband = cytoband; - } - - public Integer getWidePeakStart() { - return widePeakStart; - } - - public void setWidePeakStart(Integer widePeakStart) { - this.widePeakStart = widePeakStart; - } - - public Integer getWidePeakEnd() { - return widePeakEnd; - } - - public void setWidePeakEnd(Integer widePeakEnd) { - this.widePeakEnd = widePeakEnd; - } - - public BigDecimal getqValue() { - return qValue; - } - - public void setqValue(BigDecimal qValue) { - this.qValue = qValue; - } - - public Boolean getAmp() { - return amp; - } - - public void setAmp(Boolean amp) { - this.amp = amp; - } - - public List getGenes() { - return genes; - } - - public void setGenes(List genes) { - this.genes = genes; - } -} \ No newline at end of file diff --git a/model/src/main/java/org/cbioportal/model/MutSig.java b/model/src/main/java/org/cbioportal/model/MutSig.java deleted file mode 100644 index a668131e6d9..00000000000 --- a/model/src/main/java/org/cbioportal/model/MutSig.java +++ /dev/null @@ -1,97 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import java.math.BigDecimal; -import javax.validation.constraints.NotNull; - -public class MutSig implements Serializable { - - private Integer cancerStudyId; - @NotNull - private String cancerStudyIdentifier; - @NotNull - private Integer entrezGeneId; - @NotNull - private String hugoGeneSymbol; - @NotNull - private Integer rank; - private Integer numbasescovered; - @NotNull - private Integer nummutations; - @NotNull - private BigDecimal pValue; - @NotNull - private BigDecimal qValue; - - public Integer getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(Integer cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getCancerStudyIdentifier() { - return cancerStudyIdentifier; - } - - public void setCancerStudyIdentifier(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - - public Integer getEntrezGeneId() { - return entrezGeneId; - } - - public void setEntrezGeneId(Integer entrezGeneId) { - this.entrezGeneId = entrezGeneId; - } - - public String getHugoGeneSymbol() { - return hugoGeneSymbol; - } - - public void setHugoGeneSymbol(String hugoGeneSymbol) { - this.hugoGeneSymbol = hugoGeneSymbol; - } - - public Integer getRank() { - return rank; - } - - public void setRank(Integer rank) { - this.rank = rank; - } - - public Integer getNumbasescovered() { - return numbasescovered; - } - - public void setNumbasescovered(Integer numbasescovered) { - this.numbasescovered = numbasescovered; - } - - public Integer getNummutations() { - return nummutations; - } - - public void setNummutations(Integer nummutations) { - this.nummutations = nummutations; - } - - public BigDecimal getpValue() { - return pValue; - } - - public void setpValue(BigDecimal pValue) { - this.pValue = pValue; - } - - public BigDecimal getqValue() { - return qValue; - } - - public void setqValue(BigDecimal qValue) { - this.qValue = qValue; - } -} \ No newline at end of file diff --git a/model/src/main/java/org/cbioportal/model/Patient.java b/model/src/main/java/org/cbioportal/model/Patient.java deleted file mode 100644 index deaa9ebfea5..00000000000 --- a/model/src/main/java/org/cbioportal/model/Patient.java +++ /dev/null @@ -1,54 +0,0 @@ -package org.cbioportal.model; - -import javax.validation.constraints.NotNull; - -public class Patient extends UniqueKeyBase { - - private Integer internalId; - @NotNull - private String stableId; - private Integer cancerStudyId; - @NotNull - private String cancerStudyIdentifier; - private CancerStudy cancerStudy; - - public Integer getInternalId() { - return internalId; - } - - public void setInternalId(Integer internalId) { - this.internalId = internalId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public Integer getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(Integer cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getCancerStudyIdentifier() { - return cancerStudyIdentifier; - } - - public void setCancerStudyIdentifier(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - - public CancerStudy getCancerStudy() { - return cancerStudy; - } - - public void setCancerStudy(CancerStudy cancerStudy) { - this.cancerStudy = cancerStudy; - } -} \ No newline at end of file diff --git a/model/src/main/java/org/cbioportal/model/ReferenceGenomeGene.java b/model/src/main/java/org/cbioportal/model/ReferenceGenomeGene.java deleted file mode 100644 index f58398e0210..00000000000 --- a/model/src/main/java/org/cbioportal/model/ReferenceGenomeGene.java +++ /dev/null @@ -1,81 +0,0 @@ -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.cbioportal.model; - -import java.io.Serializable; -import java.net.Inet4Address; -import javax.validation.constraints.NotNull; - -/** - * Class to wrap Reference Genome Gene. - * @author Kelsey Zhu - */ -public class ReferenceGenomeGene implements Serializable { - @NotNull - private Integer referenceGenomeId; - @NotNull - private Integer entrezGeneId; - private String hugoGeneSymbol; - private String chromosome; - private String cytoband; - private Long start; - private Long end; - - public void setReferenceGenomeId(Integer referenceGenomeId) { this.referenceGenomeId = referenceGenomeId; } - - public Integer getReferenceGenomeId() { - return referenceGenomeId; - } - - public Integer getEntrezGeneId() { return entrezGeneId; } - - public void setEntrezGeneId(Integer entrezGeneId) { this.entrezGeneId = entrezGeneId; } - - public String getHugoGeneSymbol() { - return hugoGeneSymbol; - } - - public void setHugoGeneSymbol(String hugoGeneSymbol) { - this.hugoGeneSymbol = hugoGeneSymbol; - } - - public String getChromosome() { - return chromosome; - } - - public void setChromosome(String chromosome) { - this.chromosome = chromosome; - } - - public String getCytoband() { - return cytoband; - } - - public void setCytoband(String cytoband) { - this.cytoband = cytoband; - } - - public Long getStart() { return this.start; } - - public void setStart(Long start) { this.start = start; } - - public Long getEnd() { return this.end = end; } - - public void setEnd(Long end) { this.end = end; } - -} diff --git a/model/src/main/java/org/cbioportal/model/ResourceDefinition.java b/model/src/main/java/org/cbioportal/model/ResourceDefinition.java deleted file mode 100644 index 6efc8eab024..00000000000 --- a/model/src/main/java/org/cbioportal/model/ResourceDefinition.java +++ /dev/null @@ -1,76 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import javax.validation.constraints.NotNull; - -public class ResourceDefinition implements Serializable { - - @NotNull - private String resourceId; - @NotNull - private String displayName; - private String description; - @NotNull - private ResourceType resourceType; - private String priority; - private Boolean openByDefault; - @NotNull - private String cancerStudyIdentifier; - - public String getResourceId() { - return resourceId; - } - - public void setResourceId(String resourceId) { - this.resourceId = resourceId; - } - - public String getDisplayName() { - return displayName; - } - - public void setDisplayName(String displayName) { - this.displayName = displayName; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public ResourceType getResourceType() { - return resourceType; - } - - public void setResourceType(ResourceType resourceType) { - this.resourceType = resourceType; - } - - public String getPriority() { - return priority; - } - - public void setPriority(String priority) { - this.priority = priority; - } - - public Boolean getOpenByDefault() { - return openByDefault; - } - - public void setOpenByDefault(Boolean openByDefault) { - this.openByDefault = openByDefault; - } - - public String getCancerStudyIdentifier() { - return cancerStudyIdentifier; - } - - public void setCancerStudyIdentifier(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - -} diff --git a/model/src/main/java/org/cbioportal/model/Sample.java b/model/src/main/java/org/cbioportal/model/Sample.java deleted file mode 100644 index ec9f6165dc6..00000000000 --- a/model/src/main/java/org/cbioportal/model/Sample.java +++ /dev/null @@ -1,141 +0,0 @@ -package org.cbioportal.model; - -import javax.validation.constraints.NotNull; -import java.util.Objects; - -public class Sample extends UniqueKeyBase { - - public enum SampleType { - - PRIMARY_SOLID_TUMOR("Primary Solid Tumor"), - RECURRENT_SOLID_TUMOR("Recurrent Solid Tumor"), - PRIMARY_BLOOD_TUMOR("Primary Blood Tumor"), - RECURRENT_BLOOD_TUMOR("Recurrent Blood Tumor"), - METASTATIC("Metastatic"), - BLOOD_NORMAL("Blood Derived Normal"), - SOLID_NORMAL("Solid Tissues Normal"); - - private String value; - - SampleType(String value) { - this.value = value; - } - - public String getValue() { - return value; - } - - public static SampleType fromString(String value) { - - if (value != null) { - for (SampleType sampleType : SampleType.values()) { - if (value.equalsIgnoreCase(sampleType.value)) { - return sampleType; - } - } - } - return null; - } - - @Override - public String toString() { - return value; - } - } - - private Integer internalId; - @NotNull - private String stableId; - private SampleType sampleType; - private Integer patientId; - @NotNull - private String patientStableId; - private Patient patient; - @NotNull - private String cancerStudyIdentifier; - private Boolean sequenced; - private Boolean copyNumberSegmentPresent; - - public Integer getInternalId() { - return internalId; - } - - public void setInternalId(Integer internalId) { - this.internalId = internalId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public SampleType getSampleType() { - return sampleType; - } - - public void setSampleType(SampleType sampleType) { - this.sampleType = sampleType; - } - - public Integer getPatientId() { - return patientId; - } - - public void setPatientId(Integer patientId) { - this.patientId = patientId; - } - - public String getPatientStableId() { - return patientStableId; - } - - public void setPatientStableId(String patientStableId) { - this.patientStableId = patientStableId; - } - - public Patient getPatient() { - return patient; - } - - public void setPatient(Patient patient) { - this.patient = patient; - } - - public String getCancerStudyIdentifier() { - return cancerStudyIdentifier; - } - - public void setCancerStudyIdentifier(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - - public Boolean getSequenced() { - return sequenced; - } - - public void setSequenced(Boolean sequenced) { - this.sequenced = sequenced; - } - - public Boolean getCopyNumberSegmentPresent() { return copyNumberSegmentPresent; } - - public void setCopyNumberSegmentPresent(Boolean copyNumberSegmentPresent) { - this.copyNumberSegmentPresent = copyNumberSegmentPresent; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (!(o instanceof Sample)) return false; - Sample sample = (Sample) o; - return getStableId().equals(sample.getStableId()) && getCancerStudyIdentifier().equals(sample.getCancerStudyIdentifier()); - } - - @Override - public int hashCode() { - return Objects.hash(getStableId(), getCancerStudyIdentifier()); - } -} diff --git a/model/src/main/java/org/cbioportal/model/SampleList.java b/model/src/main/java/org/cbioportal/model/SampleList.java deleted file mode 100644 index 9c3a067ecdd..00000000000 --- a/model/src/main/java/org/cbioportal/model/SampleList.java +++ /dev/null @@ -1,101 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import java.util.List; - -import javax.validation.constraints.NotNull; - -public class SampleList implements Serializable { - - private Integer listId; - @NotNull - private String stableId; - private String category; - private Integer cancerStudyId; - private String cancerStudyIdentifier; - private CancerStudy cancerStudy; - private String name; - private String description; - private Integer sampleCount; - private List sampleIds; - - public Integer getListId() { - return listId; - } - - public void setListId(Integer listId) { - this.listId = listId; - } - - public String getStableId() { - return stableId; - } - - public void setStableId(String stableId) { - this.stableId = stableId; - } - - public String getCategory() { - return category; - } - - public void setCategory(String category) { - this.category = category; - } - - public Integer getCancerStudyId() { - return cancerStudyId; - } - - public void setCancerStudyId(Integer cancerStudyId) { - this.cancerStudyId = cancerStudyId; - } - - public String getCancerStudyIdentifier() { - return cancerStudyIdentifier; - } - - public void setCancerStudyIdentifier(String cancerStudyIdentifier) { - this.cancerStudyIdentifier = cancerStudyIdentifier; - } - - public CancerStudy getCancerStudy() { - return cancerStudy; - } - - public void setCancerStudy(CancerStudy cancerStudy) { - this.cancerStudy = cancerStudy; - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public Integer getSampleCount() { - return sampleCount; - } - - public void setSampleCount(Integer sampleCount) { - this.sampleCount = sampleCount; - } - - public List getSampleIds() { - return sampleIds; - } - - public void setSampleIds(List sampleIds) { - this.sampleIds = sampleIds; - } -} diff --git a/model/src/main/java/org/cbioportal/model/StructuralVariant.java b/model/src/main/java/org/cbioportal/model/StructuralVariant.java deleted file mode 100644 index 4d486c189f0..00000000000 --- a/model/src/main/java/org/cbioportal/model/StructuralVariant.java +++ /dev/null @@ -1,460 +0,0 @@ -/* - * Copyright (c) 2018 - 2022 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.cbioportal.model; - -import com.fasterxml.jackson.annotation.*; -import io.swagger.annotations.*; -import org.cbioportal.model.UniqueKeyBase; - -import java.io.Serializable; - -public class StructuralVariant extends UniqueKeyBase implements Serializable { - - private String molecularProfileId; - private String sampleId; - private String patientId; - private String studyId; - private Integer site1EntrezGeneId; - private String site1HugoSymbol; - private String site1EnsemblTranscriptId; - private String site1Chromosome; - private Integer site1Position; - private String site1Contig; - private String site1Region; - private Integer site1RegionNumber; - private String site1Description; - private Integer site2EntrezGeneId; - private String site2HugoSymbol; - private String site2EnsemblTranscriptId; - private String site2Chromosome; - private Integer site2Position; - private String site2Contig; - private String site2Region; - private Integer site2RegionNumber; - private String site2Description; - private String site2EffectOnFrame; - private String ncbiBuild; - private String dnaSupport; - private String rnaSupport; - private Integer normalReadCount; - private Integer tumorReadCount; - private Integer normalVariantCount; - private Integer tumorVariantCount; - private Integer normalPairedEndReadCount; - private Integer tumorPairedEndReadCount; - private Integer normalSplitReadCount; - private Integer tumorSplitReadCount; - private String annotation; - private String breakpointType; - private String connectionType; - private String eventInfo; - private String variantClass; - private Integer length; - private String comments; - private String driverFilter; - private String driverFilterAnn; - private String driverTiersFilter; - private String driverTiersFilterAnn; - private String svStatus; - - @JsonRawValue - @ApiModelProperty(dataType = "java.util.Map") - private String annotationJson; - - public String getMolecularProfileId() { - return molecularProfileId; - } - - public void setMolecularProfileId(String molecularProfileId) { - this.molecularProfileId = molecularProfileId; - } - - public String getSampleId() { - return sampleId; - } - - public void setSampleId(String tumorSampleBarcode) { - this.sampleId = tumorSampleBarcode; - } - - public String getPatientId() { - return patientId; - } - - public void setPatientId(String patientId) { - this.patientId = patientId; - } - - public String getStudyId() { - return studyId; - } - - public void setStudyId(String studyId) { - this.studyId = studyId; - } - - public Integer getSite1EntrezGeneId() { - return site1EntrezGeneId; - } - - public void setSite1EntrezGeneId(Integer site1EntrezGeneId) { - this.site1EntrezGeneId = site1EntrezGeneId; - } - - public String getSite1HugoSymbol() { - return site1HugoSymbol; - } - - public void setSite1HugoSymbol(String site1HugoSymbol) { - this.site1HugoSymbol = site1HugoSymbol; - } - - public String getSite1EnsemblTranscriptId() { - return site1EnsemblTranscriptId; - } - - public void setSite1EnsemblTranscriptId(String site1TranscriptId) { - this.site1EnsemblTranscriptId = site1TranscriptId; - } - - public String getSite1Chromosome() { - return site1Chromosome; - } - - public void setSite1Chromosome(String site1Chrom) { - this.site1Chromosome = site1Chrom; - } - - public Integer getSite1Position() { - return site1Position; - } - - public void setSite1Position(Integer site1Pos) { - this.site1Position = site1Pos; - } - - public String getSite1Description() { - return site1Description; - } - - public void setSite1Description(String site1Desc) { - this.site1Description = site1Desc; - } - - public Integer getSite2EntrezGeneId() { - return site2EntrezGeneId; - } - - public void setSite2EntrezGeneId(Integer site2EntrezGeneId) { - this.site2EntrezGeneId = site2EntrezGeneId; - } - - public String getSite2HugoSymbol() { - return site2HugoSymbol; - } - - public void setSite2HugoSymbol(String site2HugoSymbol) { - this.site2HugoSymbol = site2HugoSymbol; - } - - public String getSite2EnsemblTranscriptId() { - return site2EnsemblTranscriptId; - } - - public void setSite2EnsemblTranscriptId(String site2TranscriptId) { - this.site2EnsemblTranscriptId = site2TranscriptId; - } - - public String getSite2Chromosome() { - return site2Chromosome; - } - - public void setSite2Chromosome(String site2Chrom) { - this.site2Chromosome = site2Chrom; - } - - public Integer getSite2Position() { - return site2Position; - } - - public void setSite2Position(Integer site2Pos) { - this.site2Position = site2Pos; - } - - public String getSite2Description() { - return site2Description; - } - - public void setSite2Description(String site2Desc) { - this.site2Description = site2Desc; - } - - public String getSite2EffectOnFrame() { - return site2EffectOnFrame; - } - - public void setSite2EffectOnFrame(String site2EffectOnFrame) { - this.site2EffectOnFrame = site2EffectOnFrame; - } - - public String getNcbiBuild() { - return ncbiBuild; - } - - public void setNcbiBuild(String ncbiBuild) { - this.ncbiBuild = ncbiBuild; - } - - public String getDnaSupport() { - return dnaSupport; - } - - public void setDnaSupport(String dnaSupport) { - this.dnaSupport = dnaSupport; - } - - public String getRnaSupport() { - return rnaSupport; - } - - public void setRnaSupport(String rnaSupport) { - this.rnaSupport = rnaSupport; - } - - public Integer getNormalReadCount() { - return normalReadCount; - } - - public void setNormalReadCount(Integer normalReadCount) { - this.normalReadCount = normalReadCount; - } - - public Integer getTumorReadCount() { - return tumorReadCount; - } - - public void setTumorReadCount(Integer tumorReadCount) { - this.tumorReadCount = tumorReadCount; - } - - public Integer getNormalVariantCount() { - return normalVariantCount; - } - - public void setNormalVariantCount(Integer normalVariantCount) { - this.normalVariantCount = normalVariantCount; - } - - public Integer getTumorVariantCount() { - return tumorVariantCount; - } - - public void setTumorVariantCount(Integer tumorVariantCount) { - this.tumorVariantCount = tumorVariantCount; - } - - public Integer getNormalPairedEndReadCount() { - return normalPairedEndReadCount; - } - - public void setNormalPairedEndReadCount(Integer normalPairedEndReadCount) { - this.normalPairedEndReadCount = normalPairedEndReadCount; - } - - public Integer getTumorPairedEndReadCount() { - return tumorPairedEndReadCount; - } - - public void setTumorPairedEndReadCount(Integer tumorPairedEndReadCount) { - this.tumorPairedEndReadCount = tumorPairedEndReadCount; - } - - public Integer getNormalSplitReadCount() { - return normalSplitReadCount; - } - - public void setNormalSplitReadCount(Integer normalSplitReadCount) { - this.normalSplitReadCount = normalSplitReadCount; - } - - public Integer getTumorSplitReadCount() { - return tumorSplitReadCount; - } - - public void setTumorSplitReadCount(Integer tumorSplitReadCount) { - this.tumorSplitReadCount = tumorSplitReadCount; - } - - public String getAnnotation() { - return annotation; - } - - public void setAnnotation(String annotation) { - this.annotation = annotation; - } - - public String getBreakpointType() { - return breakpointType; - } - - public void setBreakpointType(String breakpointType) { - this.breakpointType = breakpointType; - } - - public String getConnectionType() { - return connectionType; - } - - public void setConnectionType(String connectionType) { - this.connectionType = connectionType; - } - - public String getEventInfo() { - return eventInfo; - } - - public void setEventInfo(String eventInfo) { - this.eventInfo = eventInfo; - } - - public String getVariantClass() { - return variantClass; - } - - public void setVariantClass(String variantClass) { - this.variantClass = variantClass; - } - - public Integer getLength() { - return length; - } - - public void setLength(Integer length) { - this.length = length; - } - - public String getComments() { - return comments; - } - - public void setComments(String comments) { - this.comments = comments; - } - - public String getDriverFilter() { - return driverFilter; - } - - public void setDriverFilter(String driverFilter) { - this.driverFilter = driverFilter; - } - - public String getDriverFilterAnn() { - return driverFilterAnn; - } - - public void setDriverFilterAnn(String driverFilterAnn) { - this.driverFilterAnn = driverFilterAnn; - } - - public String getDriverTiersFilter() { - return driverTiersFilter; - } - - public void setDriverTiersFilter(String driverTiersFilter) { - this.driverTiersFilter = driverTiersFilter; - } - - public String getDriverTiersFilterAnn() { - return driverTiersFilterAnn; - } - - public void setDriverTiersFilterAnn(String driverTiersFilterAnn) { - this.driverTiersFilterAnn = driverTiersFilterAnn; - } - - public String getSvStatus() { - return svStatus; - } - - public void setSvStatus(String svStatus) { - this.svStatus = svStatus; - } - - public String getSite1Contig() { - return site1Contig; - } - - public void setSite1Contig(String site1Contig) { - this.site1Contig = site1Contig; - } - - public String getSite1Region() { - return site1Region; - } - - public void setSite1Region(String site1Region) { - this.site1Region = site1Region; - } - - public Integer getSite1RegionNumber() { - return site1RegionNumber; - } - - public void setSite1RegionNumber(Integer site1RegionNumber) { - this.site1RegionNumber = site1RegionNumber; - } - - public String getSite2Contig() { - return site2Contig; - } - - public void setSite2Contig(String site2Contig) { - this.site2Contig = site2Contig; - } - - public String getSite2Region() { - return site2Region; - } - - public void setSite2Region(String site2Region) { - this.site2Region = site2Region; - } - - public Integer getSite2RegionNumber() { - return site2RegionNumber; - } - - public void setSite2RegionNumber(Integer site2RegionNumber) { - this.site2RegionNumber = site2RegionNumber; - } - - public String getAnnotationJson() { - return annotationJson; - } - - public void setAnnotationJson(String annotationJson) { - this.annotationJson = annotationJson; - } -} diff --git a/model/src/main/java/org/cbioportal/model/TypeOfCancer.java b/model/src/main/java/org/cbioportal/model/TypeOfCancer.java deleted file mode 100644 index c57f5226789..00000000000 --- a/model/src/main/java/org/cbioportal/model/TypeOfCancer.java +++ /dev/null @@ -1,54 +0,0 @@ -package org.cbioportal.model; - -import java.io.Serializable; -import javax.validation.constraints.NotNull; - -public class TypeOfCancer implements Serializable { - - @NotNull - private String typeOfCancerId; - private String name; - private String dedicatedColor; - private String shortName; - private String parent; - - public String getTypeOfCancerId() { - return typeOfCancerId; - } - - public void setTypeOfCancerId(String typeOfCancerId) { - this.typeOfCancerId = typeOfCancerId; - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getDedicatedColor() { - return dedicatedColor; - } - - public void setDedicatedColor(String dedicatedColor) { - this.dedicatedColor = dedicatedColor; - } - - public String getShortName() { - return shortName; - } - - public void setShortName(String shortName) { - this.shortName = shortName; - } - - public String getParent() { - return parent; - } - - public void setParent(String parent) { - this.parent = parent; - } -} \ No newline at end of file diff --git a/persistence/persistence-api/pom.xml b/persistence/persistence-api/pom.xml deleted file mode 100644 index 71dd419e688..00000000000 --- a/persistence/persistence-api/pom.xml +++ /dev/null @@ -1,55 +0,0 @@ - - - - persistence - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - persistence-api - - - - org.mskcc.cbio - model - - - org.mskcc.cbio - utils - - - javax.cache - cache-api - - - org.ehcache - ehcache - - - org.redisson - redisson - 3.13.2 - - - commons-io - commons-io - - - - - - - ../../src/main/resources/portal.properties - - - - src/main/resources - true - - - - - diff --git a/persistence/persistence-api/src/main/resources/ehcache.xml b/persistence/persistence-api/src/main/resources/ehcache.xml deleted file mode 100644 index a180cd36758..00000000000 --- a/persistence/persistence-api/src/main/resources/ehcache.xml +++ /dev/null @@ -1,29 +0,0 @@ - - - - - - - - - - - org.cbioportal.persistence.util.CacheEventLogger - ASYNCHRONOUS - UNORDERED - CREATED - REMOVED - EXPIRED - EVICTED - UPDATED - - - - - diff --git a/persistence/persistence-connections/pom.xml b/persistence/persistence-connections/pom.xml deleted file mode 100644 index a3b6ce71197..00000000000 --- a/persistence/persistence-connections/pom.xml +++ /dev/null @@ -1,33 +0,0 @@ - - - 4.0.0 - - persistence - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - - persistence-connections - - - - - maven-remote-resources-plugin - - - - bundle - - - - - - **/*.xml - - - - - - diff --git a/persistence/persistence-connections/src/main/resources/applicationContext-persistenceConnections.xml b/persistence/persistence-connections/src/main/resources/applicationContext-persistenceConnections.xml deleted file mode 100644 index 1259e8621cf..00000000000 --- a/persistence/persistence-connections/src/main/resources/applicationContext-persistenceConnections.xml +++ /dev/null @@ -1,97 +0,0 @@ - - - - - - - - - - - - classpath:/portal.properties - file:///#{systemEnvironment['PORTAL_HOME']}/portal.properties - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - mysql - h2 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/persistence/persistence-mybatis/pom.xml b/persistence/persistence-mybatis/pom.xml deleted file mode 100644 index 0f0f865aa87..00000000000 --- a/persistence/persistence-mybatis/pom.xml +++ /dev/null @@ -1,62 +0,0 @@ - - - - persistence - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - persistence-mybatis - - - - org.mskcc.cbio - persistence-api - - - org.mskcc.cbio - db-scripts - test - - - org.mskcc.cbio - utils - - - junit - junit - - - org.springframework - spring-test - test - - - com.h2database - h2 - - - org.apache.commons - commons-dbcp2 - - - org.springframework - spring-jdbc - - - org.mybatis - mybatis-spring - - - org.apache.commons - commons-math3 - - - org.mockito - mockito-core - - - diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepositoryTest.java b/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepositoryTest.java deleted file mode 100644 index f77f1ce02a1..00000000000 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepositoryTest.java +++ /dev/null @@ -1,43 +0,0 @@ -package org.cbioportal.persistence.mybatis; - -import org.cbioportal.model.VariantCount; -import org.junit.Assert; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -import java.util.Arrays; -import java.util.List; - -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable -public class VariantCountMyBatisRepositoryTest { - - @Autowired - private VariantCountMyBatisRepository variantCountMyBatisRepository; - - @Test - public void fetchVariantCounts() throws Exception { - - List result = variantCountMyBatisRepository.fetchVariantCounts("study_tcga_pub_mutations", - Arrays.asList(207, 207, 369), Arrays.asList("AKT1 truncating", null, "ARAF G1513 missense")); - - Assert.assertEquals(3, result.size()); - VariantCount variantCount1 = result.get(0); - Assert.assertEquals("study_tcga_pub_mutations", variantCount1.getMolecularProfileId()); - Assert.assertEquals((Integer) 207, variantCount1.getEntrezGeneId()); - Assert.assertEquals(null, variantCount1.getKeyword()); - Assert.assertEquals((Integer) 21, variantCount1.getNumberOfSamplesWithKeyword()); - Assert.assertEquals((Integer) 22, variantCount1.getNumberOfSamplesWithMutationInGene()); - VariantCount variantCount2 = result.get(1); - Assert.assertEquals("study_tcga_pub_mutations", variantCount2.getMolecularProfileId()); - Assert.assertEquals((Integer) 207, variantCount2.getEntrezGeneId()); - Assert.assertEquals("AKT1 truncating", variantCount2.getKeyword()); - Assert.assertEquals((Integer) 54, variantCount2.getNumberOfSamplesWithKeyword()); - Assert.assertEquals((Integer) 64, variantCount2.getNumberOfSamplesWithMutationInGene()); - } -} diff --git a/persistence/persistence-mybatis/src/test/resources/logback.xml b/persistence/persistence-mybatis/src/test/resources/logback.xml deleted file mode 100644 index 9d21a927c45..00000000000 --- a/persistence/persistence-mybatis/src/test/resources/logback.xml +++ /dev/null @@ -1,24 +0,0 @@ - - - - - %d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n - - - - - - - - - - - \ No newline at end of file diff --git a/persistence/pom.xml b/persistence/pom.xml deleted file mode 100644 index 45b409ac61c..00000000000 --- a/persistence/pom.xml +++ /dev/null @@ -1,47 +0,0 @@ - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - - - org.osgi - org.osgi.service.component.annotations - - - javax.annotation - javax.annotation-api - - - org.mybatis - mybatis - - - org.springframework - spring-beans - - - org.springframework - spring-context-support - - - org.springframework - spring-tx - - - - persistence - pom - - persistence-api - persistence-mybatis - persistence-connections - - - diff --git a/pom.xml b/pom.xml index 828ec726cec..575da41b367 100644 --- a/pom.xml +++ b/pom.xml @@ -1,1247 +1,540 @@ - - - 4.0.0 - org.mskcc.cbio - master - pom - Portal Master - - 0-unknown-version-SNAPSHOT - master maven module + + 4.0.0 - - scm:git:https://github.com/cBioPortal/cbioportal.git - + + org.springframework.boot + spring-boot-starter-parent + 3.1.4 + - - - alfresco - Alfresco - https://artifacts.alfresco.com/nexus/content/repositories/public/ - - false - - - - jitpack.io - https://jitpack.io - - - - - jitpack.io - https://jitpack.io - - + org.cbioportal + cbioportal + 6.0.0-SNAPSHOT - - - - true - - - org.mskcc.cbio.importer.Admin - - - - - com.github.cbioportal.maven-external-version - maven-external-version-plugin - f09c2b9608 - true - - - - - - - - org.jacoco - jacoco-maven-plugin - 0.8.5 - - - - pre-unit-test - process-test-classes - - prepare-agent - - - - ${project.build.directory}/coverage-reports/jacoco-ut.exec - - argLine - - - - - post-unit-test - test - - report - - - - ${project.build.directory}/coverage-reports/jacoco-ut.exec - - ${project.build.directory}/coverage-reports/jacoco-ut - - - - - - - maven-antrun-plugin - 1.8 - - false - - - validate - - run - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ant-contrib - ant-contrib - 1.0b3 - - - ant - ant - - - - - org.apache.ant - ant-nodeps - 1.8.1 - - - - - - exec-maven-plugin - org.codehaus.mojo - 1.6.0 - false - - - Generate Test DB schema - integration-test - - exec - - - ${basedir}/db-scripts/src/main/resources/gen-cgds-test-schema.sh - - - - - - pl.project13.maven - git-commit-id-plugin - 2.2.4 - - - get-the-git-infos - - revision - - - initialize - - - validate-the-git-infos - - validateRevision - - - package - - - - true - - true - - - - - - - - external - - org.mskcc.cbio.importer.PortalImporterTool - cbioportal - - - - heroku + cBioPortal for Cancer Genomics - - - - - org.apache.maven.plugins - maven-resources-plugin - - false - 2.7 - - - org.apache.maven.shared - maven-filtering - 1.3 - - - - - copy-resources - validate - - copy-resources - - - . - - - heroku/ - true - - - - - - - - - pl.project13.maven - git-commit-id-plugin - - - get-the-git-infos - none - - - validate-the-git-infos - none - - - - - - - + + 21 + 21 - - v5.4.10 - com.github.cbioportal - 5.2.20.RELEASE - 5.3.0.RELEASE - 5.3.1.RELEASE - 1.1.6.RELEASE - 2.13.0 - 5.1.48 - 8.5.61.0 - 1.7.32 - 1.2.10 - 3.0.0 + yyyyMMdd-HHmm + ${maven.build.timestamp} + + com.github.cbioportal + v5.4.9 - UTF-8 - UTF-8 - org.mskcc - org.mskcc.mondrian - ${maven.build.timestamp} - yyyyMMdd-HHmm + + 2.13.1 - cBioPortal_cbioportal - ${project.groupId}:${project.artifactId} - cbioportal - https://sonarcloud.io + + + 1.1.6.RELEASE - cbioportal - com.mysql.jdbc.Driver - - jdbc:mysql://127.0.0.1:3306/cgds_test?useSSL=false&sessionVariables=default_storage_engine=InnoDB&allowLoadLocalInfile=true&allowPublicKeyRetrieval=true - cbio_user - somepassword + 2.12.5 + 5.1.48 + 3.0.0 + UTF-8 + UTF-8 - - provided - 720 + + cBioPortal_cbioportal + ${project.groupId}:${project.artifactId} + cbioportal + https://sonarcloud.io - - 2.13.1 - + + com.mysql.jdbc.Driver + + + jdbc:mysql://127.0.0.1:3306/cgds_test?sessionVariables=default_storage_engine=InnoDB&allowLoadLocalInfile=true + cbio_user + somepassword - - portal - - - core - web - model - persistence - service - scripts - db-scripts - security - utils - maf - + + provided + 720 - - - - org.slf4j - slf4j-api - - - ch.qos.logback - logback-core - - - ch.qos.logback - logback-classic - - - pl.pragmatists - JUnitParams - 1.1.0 - test - - - - - + + 1.6.3 + 3.0.2 + 1.16.2 + 5.8.0 + 4.1.1 - - org.mskcc.cbio - portal - ${project.version} - - - org.mskcc.cbio - core - ${project.version} - - - org.mskcc.cbio - web - ${project.version} - - - org.mskcc.cbio - model - ${project.version} - - - org.mskcc.cbio - persistence - ${project.version} - - - org.mskcc.cbio - persistence-api - ${project.version} - - - org.mskcc.cbio - persistence-connections - ${project.version} - - - org.mskcc.cbio - persistence-mybatis - ${project.version} - - - org.mskcc.cbio - service - ${project.version} - - - org.mskcc.cbio - scripts - ${project.version} - - - org.mskcc.cbio - db-scripts - ${project.version} - - - org.mskcc.cbio - security - ${project.version} - - - org.mskcc.cbio - security-spring - ${project.version} - - - org.mskcc.cbio - permission-evaluator - ${project.version} - - - org.mongodb - mongo-java-driver - 3.12.9 - - - org.mskcc.cbio - utils - ${project.version} - - - com.github.cbioportal - session-service - model - v0.5.0 - - - - - mysql - mysql-connector-java - ${mysql-connector.version} - - - - org.apache.commons - commons-lang3 - 3.11 - - - org.apache.commons - commons-text - 1.10.0 - - - org.apache.commons - commons-math3 - 3.6.1 - - - commons-beanutils - commons-beanutils - 1.9.4 - - - commons-cli - commons-cli - 1.4 - - - org.apache.commons - commons-collections4 - 4.4 - - - org.apache.geronimo.bundles - commons-discovery - 0.4_1 - runtime - - - org.apache.commons - commons-dbcp2 - 2.8.0 - - - commons-fileupload - commons-fileupload - 1.4 - - - commons-io - commons-io - 2.8.0 - - - commons-codec - commons-codec - 1.15 - - - - org.apache.httpcomponents - httpclient - 4.3.6 - - - org.apache.httpcomponents - httpcore - 4.3.2 - - - commons-httpclient - commons-httpclient - 3.1 - - - - javax.annotation - javax.annotation-api - 1.3.2 - - - javax.el - javax.el-api - 3.0.0 - - - org.glassfish.web - javax.el - 2.2.6 - - - - org.hibernate - hibernate-validator - 5.3.4.Final - - - - org.mockito - mockito-core - 3.3.3 - test - - - hamcrest-core - org.hamcrest - - - - - - com.vlkan.hrrs - hrrs-servlet-filter-base64 - 0.5 - - - - com.google.guava - guava - 29.0-jre - - - - org.mybatis - mybatis-spring - 2.0.4 - - - org.mybatis - mybatis - 3.5.7 - - - - org.slf4j - slf4j-api - ${slf4j.version} - - - ch.qos.logback - logback-core - ${logback.version} - - - ch.qos.logback - logback-classic - ${logback.version} - + + 3.13.2 + 3.6.1 + 2.2.0 + 4.4 + 0.11.2 + 4.11.0 + 32.1.3-jre + 1.16.0 + 1.7 + 1.1 + 3.7.1 + 1.1.1 + 3.12.14 + 0.8.2 + 5.1.48 + 1.8.1 + 3.14.0 - - - org.springframework - spring-core - ${spring.version} - - - org.springframework - spring-expression - ${spring.version} - - - org.springframework - spring-beans - ${spring.version} - - - org.springframework - spring-aop - ${spring.version} - - - org.springframework - spring-context - ${spring.version} - - - org.springframework - spring-context-support - 5.2.6.RELEASE - - - org.springframework.integration - spring-integration-core - ${spring.integration.version} - - - org.springframework.integration - spring-integration-sftp - ${spring.integration.version} - - - org.springframework - spring-tx - ${spring.version} - - - org.springframework - spring-orm - ${spring.version} - - - org.springframework - spring-jdbc - ${spring.version} - - - org.springframework - spring-webmvc - ${spring.version} - - - org.springframework - spring-web - ${spring.version} - - - org.springframework - spring-test - ${spring.version} - test - - - io.reactivex.rxjava2 - rxjava - 2.2.19 - - - - org.springframework.security - spring-security-core - ${spring.security.version} - - - org.springframework.security - spring-security-config - ${spring.security.version} - - - org.springframework.security - spring-security-web - ${spring.security.version} - - - org.springframework.security - spring-security-test - ${spring.security.version} - - - org.springframework.security - spring-security-ldap - ${spring.security.version} - - - org.springframework.security - spring-security-openid - ${spring.security.version} - - - org.springframework.security - spring-security-taglibs - ${spring.security.version} - runtime - - - org.springframework.security - spring-security-acl - ${spring.security.version} - - - org.springframework.security - spring-security-jwt - 1.0.11.RELEASE - - - org.bouncycastle - bcprov-jdk15on - - - - - org.springframework.security.oauth - spring-security-oauth2 - 2.2.5.RELEASE - - - org.springframework.security.extensions - spring-security-saml2-core - 1.0.3.RELEASE - - - - org.springframework.social - spring-social-config - ${spring.social.version} - - - org.springframework.social - spring-social-core - ${spring.social.version} - - - org.springframework.social - spring-social-security - ${spring.social.version} - - - org.springframework.social - spring-social-web - ${spring.social.version} - - - - com.github.spring-social - spring-social-google - 1.1.3 - - - - com.github.cbioportal - spring-social-live - 40100de1ad80e2865c834f2b64b32bb6c2b368ce - - - javax.servlet - servlet-api - - - - - - com.fasterxml.jackson.core - jackson-core - ${jackson.version} - - - com.fasterxml.jackson.core - jackson-databind - ${jackson.version} - - - com.fasterxml.jackson.datatype - jackson-datatype-jdk8 - ${jackson.version} - - - com.fasterxml.jackson.dataformat - jackson-dataformat-yaml - ${jackson.version} - - - com.fasterxml.jackson.core - jackson-annotations - ${jackson.version} - - - - junit - junit - 4.12 - test - - - - com.h2database - h2 - 1.4.197 - test - - - - javax.cache - cache-api - 1.1.0 - - - org.ehcache - ehcache - 3.7.1 - - - - com.google.inject - guice - 2.0 - - - - javax.servlet - javax.servlet-api - 3.0.1 - - - - io.jsonwebtoken - jjwt-api - 0.10.5 - - - io.jsonwebtoken - jjwt-impl - 0.10.5 - runtime - - - io.jsonwebtoken - jjwt-jackson - 0.10.5 - runtime - - - - jstl - jstl - 1.2 - runtime - - - - org.apache.tomcat - tomcat-catalina - 7.0.68 - - ${tomcat.catalina.scope} - - - - org.osgi - org.osgi.service.component.annotations - 1.4.0 - provided - - - cglib - cglib - 2.2 - - - com.googlecode.json-simple - json-simple - 1.1 - - - io.springfox - springfox-bean-validators - ${springfox.version} - - - io.springfox - springfox-boot-starter - ${springfox.version} - - - io.springfox - springfox-oas - ${springfox.version} - - - io.springfox - springfox-spring-web - ${springfox.version} - - - org.mapstruct - mapstruct - 1.0.0.Final - - - com.jayway.jsonpath - json-path-assert - 2.4.0 - test - - - com.github.romain-warnan - simple-java-bitly - 1.1 - - - commons-validator - commons-validator - 1.6 - - - io.sentry - sentry-spring - 1.7.2 - - - org.aspectj - aspectjweaver - 1.8.12 - - - com.datumbox - datumbox-framework-lib - 0.8.1 - - - org.owasp - antisamy - 1.4 - - - org.antlr - antlr-runtime - 3.2 - - - net.sf.jopt-simple - jopt-simple - 3.0-rc2 - - - net.sf.jung - jung-api - 2.0.1 - - - net.sf.jung - jung-graph-impl - 2.0.1 - - - net.sf.opencsv - opencsv - 2.3 - - - batik - batik - 1.5 - - - batik - batik-rasterizer - 1.5 - - - org.apache.xmlgraphics - batik-codec - 1.7 - - - xalan - xalan - - - - - org.apache.xmlgraphics - fop - 1.0 - - - xerces - xercesImpl - 2.12.0-alfresco-patched-20191004 - - - - dom4j - dom4j - 1.6.1 - - - jaxen - jaxen - 1.1.6 - - - org.easymock - easymock - 3.2 - test - - - cglib - cglib-nodep - - - - - com.auth0 - jwks-rsa - 0.9.0 - - - + + org.mskcc + org.mskcc.mondrian + - - - - src/main/resources - true - - **/portal.properties - **/maven.properties - **/git.properties - - - - src/main/resources - false - - **/portal.properties - **/maven.properties - **/git.properties - - - - - - - org.apache.maven.plugins - maven-resources-plugin - - - org.apache.maven.plugins - maven-site-plugin - - - org.apache.maven.plugins - maven-release-plugin - - + + + org.springframework.boot + spring-boot-starter + + + org.springframework.boot + spring-boot-starter-test + test + + + org.junit.vintage + junit-vintage-engine + test + + + org.slf4j + slf4j-api + + + ch.qos.logback + logback-core + + + ch.qos.logback + logback-classic + + + pl.pragmatists + JUnitParams + 1.1.0 + test + + + org.springframework.boot + spring-boot-starter-web + + + org.springframework.boot + spring-boot-starter-validation + + + org.mybatis.spring.boot + mybatis-spring-boot-starter + ${mybatis.starter.version} + + + org.redisson + redisson + ${redisson.version} + + + org.apache.commons + commons-math3 + ${commons-math3.version} + + + org.springdoc + springdoc-openapi-starter-webmvc-ui + ${springdoc.version} + + + org.springframework.security + spring-security-core + + + org.apache.commons + commons-collections4 + ${apache-commons-collections.version} + + + io.jsonwebtoken + jjwt-api + ${io-jsonwebtoken.version} + + + io.jsonwebtoken + jjwt-impl + ${io-jsonwebtoken.version} + + + io.jsonwebtoken + jjwt-jackson + ${io-jsonwebtoken.version} + + + org.springframework.boot + spring-boot-starter-data-mongodb + + + org.mongodb + bson + ${mongodb_bson.version} + + + com.google.guava + guava + ${google_guava.version} + + + commons-codec + commons-codec + ${commons_codec.version} + + + commons-validator + commons-validator + ${commons_validator.version} + + + com.github.romain-warnan + simple-java-bitly + ${simple_java_bitly.version} + + + org.ehcache + ehcache + ${ehcache.version} + + + com.googlecode.json-simple + json-simple + ${json_simple.version} + + + org.springframework.boot + spring-boot-starter-cache + + + org.mongodb + mongo-java-driver + ${mongo_java_driver.version} + + + com.datumbox + datumbox-framework-lib + ${datumbox.version} + + + org.springframework.security + spring-security-config + + + org.springframework.security + spring-security-web + + + mysql + mysql-connector-java + ${mysql_driver.version} + + + org.springframework.boot + spring-boot-starter-thymeleaf + + + com.github.dasniko + testcontainers-keycloak + ${dasniko-testcontainer-keycload.version} + test + + + org.springframework.security + spring-security-test + test + + + org.seleniumhq.selenium + selenium-chrome-driver + ${selenium_chrome_driver.version} + test + + + org.testcontainers + testcontainers + test + + + org.testcontainers + mysql + test + + + org.testcontainers + selenium + test + + + com.h2database + h2 + test + - - - - org.apache.maven.plugins - maven-compiler-plugin - 3.8.1 - - 1.8 - 1.8 - - -parameters - - - - - org.apache.maven.plugins - maven-resources-plugin - 2.6 - - - org.apache.maven.plugins - maven-site-plugin - 3.4 - - - org.apache.maven.plugins - maven-release-plugin - 2.5.3 - - - org.apache.maven.plugins - maven-surefire-plugin - 2.22.2 - - - org.apache.maven.plugins - maven-dependency-plugin - 3.0.0 - - - org.apache.maven.plugins - maven-war-plugin - 3.3.1 - - - org.apache.maven.plugins - maven-javadoc-plugin - 2.9 - - - org.apache.maven.plugins - maven-jxr-plugin - 2.5 - - - org.apache.maven.plugins - maven-project-info-reports-plugin - 2.7 - - - org.apache.maven.plugins - maven-shade-plugin - 3.2.4 - - - maven-failsafe-plugin - 3.0.0-M4 - - - org.codehaus.mojo - tomcat-maven-plugin - 1.1 - - - org.codehaus.mojo - sql-maven-plugin - 1.5 - - - mysql - mysql-connector-java - ${mysql-connector.version} - - - - - org.apache.maven.plugins - maven-invoker-plugin - 3.2.1 - - - maven-remote-resources-plugin - 1.7.0 - - - maven-clean-plugin - 3.1.0 - - - - org.eclipse.m2e - lifecycle-mapping - 1.0.0 - - - - - - org.codehaus.mojo - sql-maven-plugin - - execute - - - - - - - - - - - - - + + + com.github.jitpack + maven-simple + 0.1 + + + + org.springframework.boot + spring-boot-starter-oauth2-client + + + org.springframework.boot + spring-boot-starter-oauth2-resource-server + + + org.springframework.security + spring-security-saml2-service-provider + + + org.springframework.session + spring-session-data-redis + + + org.springframework.boot + spring-boot-starter-data-redis + + + org.springframework.boot + spring-boot-devtools + runtime + true + + - - - - org.apache.maven.plugins - maven-javadoc-plugin - - org.umlgraph.doclet.UmlGraphDoc - - org.umlgraph - umlgraph - 5.6 - - -views -all - true - - - - org.apache.maven.plugins - maven-jxr-plugin - - - org.apache.maven.plugins - maven-project-info-reports-plugin - - - + + cbioportal + + + + org.apache.maven.plugins + maven-wrapper-plugin + 3.2.0 + + + + + + src/main/resources/application.properties + src/main/resources/maven.properties + + + + + + src/main/resources + true + + artwork/** + content/** + tutorials/** + webapp/** + templates/** + *.pdf + db-scripts/** + + + + + src/main/resources + false + + webapp/** + templates/** + + + + + src/main/resources/db-scripts + db-scripts + false + + cgds.sql + migration.sql + + + + + + + org.springframework.boot + spring-boot-maven-plugin + + + repackage + + exec + + + + + + + + io.github.git-commit-id + git-commit-id-maven-plugin + 5.0.0 + + + get-the-git-infos + initialize + + revision + + + + validate-the-git-infos + package + + validateRevision + + + + + ${project.basedir}/.git + true + + ${project.build.outputDirectory}/git.properties + full + + + + org.apache.maven.plugins + maven-dependency-plugin + + + unpack + prepare-package + + unpack + + + + + ${frontend.groupId} + cbioportal-frontend + ${frontend.version} + jar + + ${project.build.directory}/classes + *index* + true + + + + + + + + org.apache.maven.plugins + maven-wrapper-plugin + + + + + + + + + org.apache.maven.plugins + maven-javadoc-plugin + + org.umlgraph.doclet.UmlGraphDoc + + org.umlgraph + umlgraph + 5.6 + + -views -all + true + + + + + + + + + jboss-third-party + + https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/ + + + maven-snapshots + https://repository.apache.org/content/repositories/snapshots/ + + + maven-shade-plugin + + https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-shade-plugin + + + + + + + jitpack.io + https://jitpack.io + + + + jboss-third-party + + https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/ + + + + shiboleth + + https://build.shibboleth.net/nexus/content/repositories/releases/ + + + + maven-central + https://repo1.maven.org/maven2/ + + + + + + default + + true + + + false + + true + + + + integration-test + + true + + false + + + - - - portal.snapshots - cBio Portal Snapshots Repository - ${portal.snapshot.url} - - - portal.releases - cBio Portal Releases Repository - ${portal.release.url} - - diff --git a/portal/package.json b/portal/package.json deleted file mode 100644 index 524cbdb977a..00000000000 --- a/portal/package.json +++ /dev/null @@ -1,28 +0,0 @@ -{ - "name": "cbioportal", - "version": "1.0.0", - "description": "The cBioPortal for Cancer Genomics provides visualization, analysis, and download of large-scale cancer genomics data sets. The cBioPortal is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License, version 3, as published by the Free Software Foundation.", - "main": "index.js", - "directories": { - "doc": "docs", - "test": "test" - }, - "scripts": { - "test": "echo \"Error: no test specified\" && exit 1" - }, - "repository": { - "type": "git", - "url": "git+https://github.com/cBioPortal/cbioportal.git" - }, - "author": "", - "license": "ISC", - "bugs": { - "url": "https://github.com/cBioPortal/cbioportal/issues" - }, - "homepage": "https://github.com/cBioPortal/cbioportal#readme", - "dependencies": { - "chai": "^3.5.0", - "mocha": "^3.1.2", - "underscore": "^1.8.3" - } -} diff --git a/portal/pom.xml b/portal/pom.xml deleted file mode 100644 index 863d73a87d9..00000000000 --- a/portal/pom.xml +++ /dev/null @@ -1,330 +0,0 @@ - - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - cbioportal - war - cBioPortal - http://maven.apache.org - - - - ch.qos.logback - logback-classic - 1.2.10 - - - ch.qos.logback - logback-core - 1.2.10 - - - org.springframework.security - spring-security-taglibs - - - org.springframework.security.extensions - spring-security-saml2-core - - - - jstl - jstl - - - - org.mskcc.cbio - core - - - - org.mskcc.cbio - web - - - org.apache.tomcat - tomcat-catalina - - - com.fasterxml.jackson.datatype - jackson-datatype-jdk8 - - - - - - - - org.apache.maven.plugins - maven-dependency-plugin - - - package - - copy - - - - - com.heroku - webapp-runner - ${webapp-runner.version} - webapp-runner.jar - - - - - - - unpack - prepare-package - - unpack - - - - - ${frontend.groupId} - cbioportal-frontend - ${frontend.version} - jar - . - *index* - true - - - - - - - - - org.apache.maven.plugins - maven-war-plugin - - ${exclude.redisson} - ${final.war.name} - ${project.build.directory}/portal - true - \ - - - ${project.parent.basedir}/persistence/persistence-connections/src/main/resources - WEB-INF/classes - - false - - - ${project.parent.basedir}/web/src/main/resources - WEB-INF/classes - true - - - src/main/webapp/WEB-INF/jsp/global - footer.jsp - WEB-INF/jsp/global - true - - - src/main/webapp/WEB-INF - - **/web.xml - - WEB-INF - true - - - reactapp - reactapp - - - ${project.parent.basedir}/db-scripts/src/main/resources - db-scripts - true - - - - - - - org.codehaus.mojo - tomcat-maven-plugin - - localhost - http://localhost:8080/manager/text - - - - - org.apache.maven.plugins - maven-resources-plugin - - - copy-parent-resources - process-sources - - copy-resources - - - ${project.build.directory}/classes - - - ${project.parent.basedir}/src/main/resources - true - - **/*.properties - - - **/portal.properties.* - **/logback.xml.* - **/maven.properties.* - **/git.properties.* - **/*.EXAMPLE - - - - - - - - - org.apache.maven.plugins - maven-invoker-plugin - - true - src/integration-tests - - */pom.xml - - ${project.build.directory}/integration-tests - ${skipTests} - ${skipTests} - - clean - verify - - - ${project.build.directory}/cbioportal.war - - ${db.test.username} - ${db.test.password} - ${db.test.url} - - - - - integration-test - - integration-test - verify - - - - - - - - ../src/main/resources/portal.properties - ../src/main/resources/maven.properties - - - - - - src/main/resources - true - - **/*.jks - artwork/** - content/** - tutorials/** - - - - src/main/resources - false - - **/*.jks - **/applicationContext-security.xml - - - - src/main/webapp/WEB-INF - true - - **/web.xml - - - - src/main/webapp/WEB-INF - false - - **/web.xml - - - - - - - ${maven.build.timestamp} - yyyyMMdd-HHmm - Tomcat - - - - - - heroku - - - - maven-clean-plugin - - - clean-jar-artifacts - install - - clean - - - true - - - ${project.parent.basedir}/portal/target - - *.war - dependency/webapp-runner.jar - - - - - - - - - - - - - exclude-redisson - - WEB-INF/lib/redisson-*.jar - - - - exclude-redisson - - - - - diff --git a/portal/runSpecJS.sh b/portal/runSpecJS.sh deleted file mode 100644 index 4fcffdaa48d..00000000000 --- a/portal/runSpecJS.sh +++ /dev/null @@ -1 +0,0 @@ -find ./src/main/webapp/js/src -name "*.spec.js" | xargs node_modules/mocha/bin/mocha diff --git a/portal/src/integration-tests/README.md b/portal/src/integration-tests/README.md deleted file mode 100644 index ec705dd0eaa..00000000000 --- a/portal/src/integration-tests/README.md +++ /dev/null @@ -1,7 +0,0 @@ -# Integration tests - -This folder contains maven projects that test particular functionality of `cbioportal.war` started under different settings. - -These tests get called by `maven-invoker-plugin` that is declared in the `portal` maven module of the project. - -Keeping tests as separate maven projects liberate us from the application dependencies and unnecessary conflicts between them and test dependencies. \ No newline at end of file diff --git a/portal/src/integration-tests/saml-oauth2-setup/README.md b/portal/src/integration-tests/saml-oauth2-setup/README.md deleted file mode 100644 index 550b71b45dd..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/README.md +++ /dev/null @@ -1,37 +0,0 @@ -# saml-oauth2-setup - -Tests oauth2 security workflow of the API with SAML authentication method for the UI. - -- `OfflineTokenDownloadIntegrationTests` tests downloading an offline token to gain access to cbioportal API. -- `Oauth2ResourceServerIntegrationTests` tests API access by different type of users (anonymous, non authorized and authorized). - -## Start mysql server for integration tests - -database name: cgds_test -username: cbio_user -password: somepassword -port: 3306 - -## Start web container with cbioportal and saml IDP - -You can start tomcat to play with the setup with the following command (replace with your values): - -```$bash -cd portal/src/integration-tests/saml-oauth2-setup -CBIO_TEST_DB_USR=cbio_user \ - CBIO_TEST_DB_PSW=somepassword \ - CBIO_TEST_DB_HOST=127.0.0.1:3306 \ - CBIO_TEST_DB_NAME=cgds_test \ - CBIO_TEST_DB_CONNECTION_STRING=jdbc:mysql://127.0.0.1:3306/cgds_test?sessionVariables=default_storage_engine=InnoDB \ - CBIO_WAR_LOCATION=../../../target/cbioportal.war \ - mvn org.codehaus.cargo:cargo-maven2-plugin:run --non-recursive -``` - -## Run integration tests only - -After starting the tomcat server above, you can run all tests with: - -```$bash -cd portal/src/integration-tests/saml-oauth2-setup -mvn test failsafe:integration-test -``` diff --git a/portal/src/integration-tests/saml-oauth2-setup/pom.xml b/portal/src/integration-tests/saml-oauth2-setup/pom.xml deleted file mode 100644 index 2db22342264..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/pom.xml +++ /dev/null @@ -1,166 +0,0 @@ - - - 4.0.0 - org.mskcc.cbio - saml-oauth2-setup - 0.0.1-SNAPSHOT - pom - - - saml-idp - - - - - junit - junit - 4.12 - test - - - org.mock-server - mockserver-netty - 5.8.0 - test - - - org.mock-server - mockserver-client-java - 5.8.0 - test - - - - - - - org.apache.maven.plugins - maven-compiler-plugin - 3.5.1 - - 1.8 - 1.8 - - -parameters - - - - - - testCompile - - - - - - org.codehaus.cargo - cargo-maven2-plugin - 1.7.8 - - - tomcat8x - embedded - - saml - oauth2 - - ${env.CBIO_TEST_DB_USR} - ${env.CBIO_TEST_DB_PSW} - ${env.CBIO_TEST_DB_CONNECTION_STRING} - - file://${project.basedir}/testSamlKeystore.jks - - 123456 - secure-key - 654321 - secure-key - - file://${project.basedir}/saml-idp-metadata.xml - - - specificBinding - bindings:HTTP-Redirect - #{null} - cbioportal - spring.security.saml.idp.id - User.email - - org.cbioportal.security.spring.authentication.saml.SAMLUserDetailsServiceImpl - - false - - false - / - client_id - client_secret - token_issuer - http://localhost:8443/auth/realms/cbio/token - http://localhost:8080/api/data-access-token/oauth2 - http://localhost:8443/auth/realms/cbio/auth - http://localhost:8443/auth/realms/cbio/jwkUrl - resource_access::cbioportal::roles - - - - - 8080 - - -Xms2g - -Xmx4g - - - - false - - - org.mskcc.cbio - cbioportal - war - ${env.CBIO_WAR_LOCATION} - - - org.mskcc.cbio - saml-idp - war - ${project.basedir}/saml-idp/target/saml-idp.war - - - - - - start-server - pre-integration-test - - start - - - - stop-server - post-integration-test - - stop - - - - - - maven-failsafe-plugin - 3.0.0-M4 - - - **/*IntegrationTests - - false - - - - - integration-test - verify - - - - - - - diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp-metadata.xml b/portal/src/integration-tests/saml-oauth2-setup/saml-idp-metadata.xml deleted file mode 100644 index ec59378d8bd..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp-metadata.xml +++ /dev/null @@ -1,50 +0,0 @@ - - - - - - - MIIChTCCAe4CCQDo0wjPUK8sMDANBgkqhkiG9w0BAQsFADCBhjELMAkGA1UEBhMCVVMxEzARBgNV - BAgMCldhc2hpbmd0b24xEjAQBgNVBAcMCVZhbmNvdXZlcjEdMBsGA1UECgwUU3ByaW5nIFNlY3Vy - aXR5IFNBTUwxDDAKBgNVBAsMA2lkcDEhMB8GA1UEAwwYaWRwLnNwcmluZy5zZWN1cml0eS5zYW1s - MB4XDTE4MDUxNDE0NTUyMVoXDTI4MDUxMTE0NTUyMVowgYYxCzAJBgNVBAYTAlVTMRMwEQYDVQQI - DApXYXNoaW5ndG9uMRIwEAYDVQQHDAlWYW5jb3V2ZXIxHTAbBgNVBAoMFFNwcmluZyBTZWN1cml0 - eSBTQU1MMQwwCgYDVQQLDANpZHAxITAfBgNVBAMMGGlkcC5zcHJpbmcuc2VjdXJpdHkuc2FtbDCB - nzANBgkqhkiG9w0BAQEFAAOBjQAwgYkCgYEA2EuygAucRBWtYifgEH/ErVUive4dZdqo72Bze4Mb - kPuTKLrMCLB6IXxt1p5lu+tr0JxOiRO3KFVOO3D0l+j9zOow4g+JdoMQsjSzA6HtL/D9ZjXP6iUx - FCYx+qmnVl3X9ipBD/HVKOBlzIqeXTSa5D17uxPQVxK64UDOI3CyY4cCAwEAATANBgkqhkiG9w0B - AQsFAAOBgQAj+6b6dlA6SitTfz44LdnFSW9mYaeimwPP8ZtU7/3EJCzLd5eq7N/0kYPNVclZvB45 - I0UMT77AHWrNyScm56MTcEpSuHhJHAqRAgJKbciCTNsFI928EqiWSmu//w0ASBN3bVa8nv8/rafu - utCq3RskTkHVZnbT5Xa6ITEZxSncow== - - - - - - - - MIIChTCCAe4CCQDo0wjPUK8sMDANBgkqhkiG9w0BAQsFADCBhjELMAkGA1UEBhMCVVMxEzARBgNV - BAgMCldhc2hpbmd0b24xEjAQBgNVBAcMCVZhbmNvdXZlcjEdMBsGA1UECgwUU3ByaW5nIFNlY3Vy - aXR5IFNBTUwxDDAKBgNVBAsMA2lkcDEhMB8GA1UEAwwYaWRwLnNwcmluZy5zZWN1cml0eS5zYW1s - MB4XDTE4MDUxNDE0NTUyMVoXDTI4MDUxMTE0NTUyMVowgYYxCzAJBgNVBAYTAlVTMRMwEQYDVQQI - DApXYXNoaW5ndG9uMRIwEAYDVQQHDAlWYW5jb3V2ZXIxHTAbBgNVBAoMFFNwcmluZyBTZWN1cml0 - eSBTQU1MMQwwCgYDVQQLDANpZHAxITAfBgNVBAMMGGlkcC5zcHJpbmcuc2VjdXJpdHkuc2FtbDCB - nzANBgkqhkiG9w0BAQEFAAOBjQAwgYkCgYEA2EuygAucRBWtYifgEH/ErVUive4dZdqo72Bze4Mb - kPuTKLrMCLB6IXxt1p5lu+tr0JxOiRO3KFVOO3D0l+j9zOow4g+JdoMQsjSzA6HtL/D9ZjXP6iUx - FCYx+qmnVl3X9ipBD/HVKOBlzIqeXTSa5D17uxPQVxK64UDOI3CyY4cCAwEAATANBgkqhkiG9w0B - AQsFAAOBgQAj+6b6dlA6SitTfz44LdnFSW9mYaeimwPP8ZtU7/3EJCzLd5eq7N/0kYPNVclZvB45 - I0UMT77AHWrNyScm56MTcEpSuHhJHAqRAgJKbciCTNsFI928EqiWSmu//w0ASBN3bVa8nv8/rafu - utCq3RskTkHVZnbT5Xa6ITEZxSncow== - - - - - urn:oasis:names:tc:SAML:1.1:nameid-format:emailAddress - - - - \ No newline at end of file diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/README.md b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/README.md deleted file mode 100644 index dde9bc388ce..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/README.md +++ /dev/null @@ -1,18 +0,0 @@ -# saml-idp - -A test SAML Identity Provider. It is used by cbioportal integration tests. -It's modified version of [a saml IDP sample code](https://github.com/spring-projects/spring-security-saml/tree/develop/samples/boot/simple-identity-provider) of the spring security. -`application.yml` specify a test user email that is added to assertions. - -## License - -The sample code is distributed under Apache License, Version 2.0. - -## Known limitations - -- The IDP does not sign assertions. That's why we had to set the following flag for the test cbioportal application: - -```$xml - - false -``` diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/pom.xml b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/pom.xml deleted file mode 100644 index 2cc5d6386c8..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/pom.xml +++ /dev/null @@ -1,58 +0,0 @@ - - - 4.0.0 - org.mskcc.cbio - saml-idp - 0.0.1-SNAPSHOT - war - - - - org.springframework.security.extensions - spring-security-saml2-core - 2.0.0.M31 - - - org.springframework.boot - spring-boot-starter-web - 2.2.0.RELEASE - - - org.slf4j - jul-to-slf4j - - - - - org.springframework.boot - spring-boot-starter-tomcat - provided - 2.2.0.RELEASE - - - - - saml-idp - - - maven-war-plugin - 2.2 - - false - - - - org.apache.maven.plugins - maven-compiler-plugin - 3.5.1 - - 1.8 - 1.8 - - -parameters - - - - - - \ No newline at end of file diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/SimpleIdentityProviderApplication.java b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/SimpleIdentityProviderApplication.java deleted file mode 100644 index ad7c9f4f5ba..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/SimpleIdentityProviderApplication.java +++ /dev/null @@ -1,8 +0,0 @@ -package sample; - -import org.springframework.boot.autoconfigure.SpringBootApplication; -import org.springframework.boot.web.servlet.support.SpringBootServletInitializer; - -@SpringBootApplication -public class SimpleIdentityProviderApplication extends SpringBootServletInitializer { -} diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/AppConfig.java b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/AppConfig.java deleted file mode 100644 index e9b6720af07..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/AppConfig.java +++ /dev/null @@ -1,10 +0,0 @@ -package sample.config; - -import org.springframework.boot.context.properties.ConfigurationProperties; -import org.springframework.context.annotation.Configuration; -import org.springframework.security.saml.provider.SamlServerConfiguration; - -@ConfigurationProperties(prefix = "spring.security.saml2") -@Configuration -public class AppConfig extends SamlServerConfiguration { -} diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/BeanConfig.java b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/BeanConfig.java deleted file mode 100644 index ee5d8639e13..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/BeanConfig.java +++ /dev/null @@ -1,48 +0,0 @@ -package sample.config; - -import org.springframework.beans.factory.annotation.Value; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.security.core.userdetails.User; -import org.springframework.security.core.userdetails.UserDetails; -import org.springframework.security.core.userdetails.UserDetailsService; -import org.springframework.security.provisioning.InMemoryUserDetailsManager; -import org.springframework.security.saml.provider.SamlServerConfiguration; -import org.springframework.security.saml.provider.identity.AssertionEnhancer; -import org.springframework.security.saml.provider.identity.config.SamlIdentityProviderServerBeanConfiguration; -import org.springframework.security.saml.saml2.attribute.Attribute; - -@Configuration -public class BeanConfig extends SamlIdentityProviderServerBeanConfiguration { - private final AppConfig config; - - public BeanConfig(AppConfig config) { - this.config = config; - } - - @Override - protected SamlServerConfiguration getDefaultHostSamlServerConfiguration() { - return config; - } - - @Bean(name = "samlAssertionEnhancer") - public AssertionEnhancer samlAssertionEnhancer(@Value("${user.email}") String testEmail) { - return assertion -> { - Attribute emailAttribute = new Attribute(); - emailAttribute.setName("User.email"); - emailAttribute.addValues(testEmail); - assertion.addAttribute(emailAttribute); - return assertion; - }; - } - - @Bean - public UserDetailsService userDetailsService() { - UserDetails userDetails = User.withDefaultPasswordEncoder() - .username("user") - .password("password") - .roles("USER") - .build(); - return new InMemoryUserDetailsManager(userDetails); - } -} diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/SecurityConfiguration.java b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/SecurityConfiguration.java deleted file mode 100644 index dab73280bb4..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/config/SecurityConfiguration.java +++ /dev/null @@ -1,59 +0,0 @@ -package sample.config; - -import org.springframework.beans.factory.annotation.Qualifier; -import org.springframework.context.annotation.Configuration; -import org.springframework.core.annotation.Order; -import org.springframework.security.config.annotation.web.builders.HttpSecurity; -import org.springframework.security.config.annotation.web.configuration.EnableWebSecurity; -import org.springframework.security.config.annotation.web.configuration.WebSecurityConfigurerAdapter; -import org.springframework.security.saml.provider.identity.config.SamlIdentityProviderSecurityConfiguration; - -import static org.springframework.security.saml.provider.identity.config.SamlIdentityProviderSecurityDsl.identityProvider; - -@EnableWebSecurity -public class SecurityConfiguration { - - @Configuration - @Order(1) - public static class SamlSecurity extends SamlIdentityProviderSecurityConfiguration { - - private final AppConfig appConfig; - private final BeanConfig beanConfig; - - public SamlSecurity(BeanConfig beanConfig, @Qualifier("appConfig") AppConfig appConfig) { - super("/saml/idp/", beanConfig); - this.appConfig = appConfig; - this.beanConfig = beanConfig; - } - - @Override - protected void configure(HttpSecurity http) throws Exception { - super.configure(http); - http.csrf().disable() - .userDetailsService(beanConfig.userDetailsService()).formLogin(); - http.apply(identityProvider()) - .configure(appConfig); - } - } - - @Configuration - public static class AppSecurity extends WebSecurityConfigurerAdapter { - - private final BeanConfig beanConfig; - - public AppSecurity(BeanConfig beanConfig) { - this.beanConfig = beanConfig; - } - - @Override - protected void configure(HttpSecurity http) throws Exception { - http.csrf().disable() - .antMatcher("/**") - .authorizeRequests() - .antMatchers("/**").authenticated() - .and() - .userDetailsService(beanConfig.userDetailsService()).formLogin() - ; - } - } -} diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/web/IdentityProviderController.java b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/web/IdentityProviderController.java deleted file mode 100644 index 86ad38e435e..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/java/sample/web/IdentityProviderController.java +++ /dev/null @@ -1,20 +0,0 @@ -package sample.web; - -import org.springframework.stereotype.Controller; -import org.springframework.web.bind.annotation.RequestMapping; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; - -@Controller -public class IdentityProviderController { - private static final Log logger = LogFactory.getLog(IdentityProviderController.class); - - @RequestMapping(value = {"/"}) - public String selectProvider() { - logger.info("Sample IDP Application - Select an SP to log into!"); - return "redirect:/saml/idp/select"; - } - - -} diff --git a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/resources/application.yml b/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/resources/application.yml deleted file mode 100644 index cbd40b1cb8e..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/saml-idp/src/main/resources/application.yml +++ /dev/null @@ -1,78 +0,0 @@ -server: - port: 8081 - servlet: - context-path: /sample-idp - -logging: - level: - root: INFO - org.springframework.web: INFO - org.springframework.security: INFO - org.springframework.security.saml: INFO - -user.email: jami@gmail.com - -spring: - thymeleaf: - cache: false - security: - saml2: - network: - read-timeout: 8000 - connect-timeout: 4000 - identity-provider: - entity-id: spring.security.saml.idp.id - alias: boot-sample-idp - sign-metadata: false - sign-assertions: true - want-requests-signed: true - signing-algorithm: RSA_SHA256 - digest-method: SHA256 - single-logout-enabled: false - name-ids: - - urn:oasis:names:tc:SAML:1.1:nameid-format:emailAddress - - keys: - active: - name: active-idp-key - private-key: | - -----BEGIN RSA PRIVATE KEY----- - Proc-Type: 4,ENCRYPTED - DEK-Info: DES-EDE3-CBC,DD358F733FD89EA1 - - e/vEctkYs/saPsrQ57djWbW9YZRQFVVAYH9i9yX9DjxmDuAZGjGVxwS4GkdYqiUs - f3jdeT96HJPKBVwj88dYaFFO8g4L6CP+ZRN3uiKXGvb606ONp1BtJBvN0b94xGaQ - K9q2MlqZgCLAXJZJ7Z5k7aQ2NWE7u+1GZchQSVo308ynsIptxpgqlpMZsh9oS21m - V5SKs03mNyk2h+VdJtch8nWwfIHYcHn9c0pDphbaN3eosnvtWxPfSLjo274R+zhw - RA3KNp2bdyfidluTXj40GOYObjfcm1g3sSMgZZqpY3EQUc8DEokfXQZghfBvoEe/ - GB0k/+StrFNl0qAdOrA6PBndlySp6STwQVAsKsKlJneRO3nAHMlZ7kenHgPunACI - IYKIPqPKGVTm1k2FuEPDuwsneEStiThtlvQ4Nu+k6hbuplaKlZ8C2xsubzVQ3rFU - KNEhU65DagDH9wR9FzEXpTYUgwrr2vNRyd0TqcSxUpUx4Ra0f3gp5/kojufD8i1y - Fs88e8L3g1to1hCsz8yIYIiFjYNf8CuH8myDd2KjqJlyL8svKi+M2pPYl9vY1m8L - u4/3ZPMrGUvtAKixBZNzj95HPX0UtmC2kPMAvdvgzaPlDeH5Ee0rzPxnHI21lmyd - O6Sb3tc/DM9xbCCQVN8OKy/pgv1PpHMKwEE7ELpDRoVWS8DzZ43Xfy1Rm8afADAv - 39oj4Gs08FblaHnOSP8WOr4r9SZbF1qmlMw7QkHeaF+MJzmG3d0t2XsDzKfc510m - gEbiD/L3Z8czwXM5g2HciAMOEVhZQJvK62KwMyOmNqBnEThBN+apsQ== - -----END RSA PRIVATE KEY----- - passphrase: idppassword - certificate: | - -----BEGIN CERTIFICATE----- - MIIChTCCAe4CCQDo0wjPUK8sMDANBgkqhkiG9w0BAQsFADCBhjELMAkGA1UEBhMC - VVMxEzARBgNVBAgMCldhc2hpbmd0b24xEjAQBgNVBAcMCVZhbmNvdXZlcjEdMBsG - A1UECgwUU3ByaW5nIFNlY3VyaXR5IFNBTUwxDDAKBgNVBAsMA2lkcDEhMB8GA1UE - AwwYaWRwLnNwcmluZy5zZWN1cml0eS5zYW1sMB4XDTE4MDUxNDE0NTUyMVoXDTI4 - MDUxMTE0NTUyMVowgYYxCzAJBgNVBAYTAlVTMRMwEQYDVQQIDApXYXNoaW5ndG9u - MRIwEAYDVQQHDAlWYW5jb3V2ZXIxHTAbBgNVBAoMFFNwcmluZyBTZWN1cml0eSBT - QU1MMQwwCgYDVQQLDANpZHAxITAfBgNVBAMMGGlkcC5zcHJpbmcuc2VjdXJpdHku - c2FtbDCBnzANBgkqhkiG9w0BAQEFAAOBjQAwgYkCgYEA2EuygAucRBWtYifgEH/E - rVUive4dZdqo72Bze4MbkPuTKLrMCLB6IXxt1p5lu+tr0JxOiRO3KFVOO3D0l+j9 - zOow4g+JdoMQsjSzA6HtL/D9ZjXP6iUxFCYx+qmnVl3X9ipBD/HVKOBlzIqeXTSa - 5D17uxPQVxK64UDOI3CyY4cCAwEAATANBgkqhkiG9w0BAQsFAAOBgQAj+6b6dlA6 - SitTfz44LdnFSW9mYaeimwPP8ZtU7/3EJCzLd5eq7N/0kYPNVclZvB45I0UMT77A - HWrNyScm56MTcEpSuHhJHAqRAgJKbciCTNsFI928EqiWSmu//w0ASBN3bVa8nv8/ - rafuutCq3RskTkHVZnbT5Xa6ITEZxSncow== - -----END CERTIFICATE----- - providers: - - alias: cbioportal - metadata: http://localhost:8080/cbioportal/saml/metadata - linktext: CBioPortal diff --git a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/Oauth2ResourceServerIntegrationTests.java b/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/Oauth2ResourceServerIntegrationTests.java deleted file mode 100644 index d11d7d01c9a..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/Oauth2ResourceServerIntegrationTests.java +++ /dev/null @@ -1,118 +0,0 @@ -/* - * Copyright (c) 2019 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal; - - -import org.json.JSONArray; -import org.json.JSONException; -import org.junit.AfterClass; -import org.junit.BeforeClass; -import org.junit.Test; -import org.mockserver.client.MockServerClient; -import org.mockserver.integration.ClientAndServer; - -import java.io.IOException; -import java.net.URLEncoder; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertTrue; -import static org.mockserver.integration.ClientAndServer.startClientAndServer; -import static org.mockserver.model.HttpRequest.request; -import static org.mockserver.model.HttpResponse.response; -import static org.mockserver.model.StringBody.subString; -import static org.mskcc.cbio.portal.TokenHelper.encodeWithoutSigning; - - -/** - * Tests protection of API endpoints - */ -public class Oauth2ResourceServerIntegrationTests { - - private static final String HOST = "http://localhost:8080/cbioportal"; - private static final int IDP_PORT = 8443; - - @Test - public void testAccessForbiddenForAnonymousUser() throws IOException { - HttpHelper.HttpResponse response = HttpHelper.sendGetRequest(HOST + "/api/studies", null, null); - assertEquals(401, response.code); - } - - @Test - public void testAccessForbiddenForFakeBearerToken() throws IOException { - String offlineToken = "{\"sub\": \"0000000000\"}"; - String encodedOfflineToken = encodeWithoutSigning(offlineToken); - new MockServerClient("localhost", IDP_PORT).when( - request() - .withMethod("POST") - .withPath("/auth/realms/cbio/token") - .withBody(subString("refresh_token=" + URLEncoder.encode(encodedOfflineToken, "UTF-8")))) - .respond(response().withStatusCode(401)); - - HttpHelper.HttpResponse response = HttpHelper.sendGetRequest(HOST + "/api/studies", encodedOfflineToken, null); - - assertEquals(401, response.code); - } - - @Test - public void testAccessForValidBearerToken() throws IOException, JSONException { - String offlineTokenClaims = "{\"sub\": \"1234567890\"}"; - String encodedOfflineToken = encodeWithoutSigning(offlineTokenClaims); - String accessTokenClaims = "{" + - "\"sub\": \"1234567890\"," + - "\"name\": \"John Doe\"," + - "\"resource_access\": {\"cbioportal\": {\"roles\": [\"cbioportal:study_tcga_pub\"]}}" + - "}"; - new MockServerClient("localhost", IDP_PORT).when( - request() - .withMethod("POST") - .withPath("/auth/realms/cbio/token") - .withBody(subString("refresh_token=" + URLEncoder.encode(encodedOfflineToken, "UTF-8")))) - .respond( - response() - .withBody("{\"access_token\": \"" - + encodeWithoutSigning(accessTokenClaims) - + "\"}")); - - HttpHelper.HttpResponse response = HttpHelper.sendGetRequest(HOST + "/api/studies", encodedOfflineToken, null); - - assertEquals(200, response.code); - assertTrue(response.body != null && !response.body.isEmpty()); - JSONArray studies = new JSONArray(response.body); - assertEquals(1, studies.length()); - studies.getJSONObject(0).getString("studyId"); - assertEquals("study_tcga_pub", studies.getJSONObject(0).getString("studyId")); - } - - private static ClientAndServer mockServer; - - @BeforeClass - public static void startServer() { - mockServer = startClientAndServer(IDP_PORT); - } - - @AfterClass - public static void stopServer() { - mockServer.stop(); - } -} diff --git a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/OfflineTokenDownloadIntegrationTests.java b/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/OfflineTokenDownloadIntegrationTests.java deleted file mode 100644 index cc3acb73bef..00000000000 --- a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/OfflineTokenDownloadIntegrationTests.java +++ /dev/null @@ -1,175 +0,0 @@ -/* - * Copyright (c) 2019 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package org.mskcc.cbio.portal; - - -import org.junit.AfterClass; -import org.junit.BeforeClass; -import org.junit.FixMethodOrder; -import org.junit.Test; -import org.junit.runners.MethodSorters; -import org.mockserver.client.MockServerClient; -import org.mockserver.integration.ClientAndServer; - -import java.io.IOException; -import java.net.URLEncoder; - -import static org.junit.Assert.*; -import static org.mockserver.integration.ClientAndServer.startClientAndServer; -import static org.mockserver.model.HttpRequest.request; -import static org.mockserver.model.HttpResponse.response; -import static org.mockserver.model.StringBody.subString; -import static org.mskcc.cbio.portal.TokenHelper.encodeWithoutSigning; - - -/** - * Tests SAML authentication and offline token download - */ -@FixMethodOrder(MethodSorters.NAME_ASCENDING) -public class OfflineTokenDownloadIntegrationTests { - - private static final String HOST = "http://localhost:8080"; - private static final String CBIO_URL = HOST + "/cbioportal"; - private static final String IDP_URL = HOST + "/saml-idp"; - - private static final int IDP_PORT = 8443; - - private static String cbioCookie; - //FIXME Endpoints to download offline token do not initiate login with saml, their simply return 401 http code. Should it be this way? Add tests - - @Test - public void A_testReachHomePageOnlyAfterLogInWithSamlIdp() throws IOException { - //1. When we try to reach cbioportal - String cbioPageUrl = CBIO_URL + "/"; - HttpHelper.HttpResponse discoveryEndpointRedirect = HttpHelper.sendGetRequest(cbioPageUrl, null, null); - //1. Then we get redirect to the discovery page - assertEquals(302, discoveryEndpointRedirect.code); - String discoveryEndpointLocation = discoveryEndpointRedirect.headers.get("Location").get(0); - assertEquals(CBIO_URL + "/saml/discovery?entityID=cbioportal&returnIDParam=idp", discoveryEndpointLocation); - //1. And we set the session cookie - String cbioSetCookie = discoveryEndpointRedirect.headers.get("Set-Cookie").get(0); - assertTrue(cbioSetCookie.startsWith("JSESSIONID=")); - cbioCookie = cbioSetCookie.split(";")[0]; - - //2. When we make a request to the discovery endpoint - HttpHelper.HttpResponse cbioIdpLoginRedirect = HttpHelper.sendGetRequest(discoveryEndpointLocation, null, cbioCookie); - //2. Then it redirects us to the saml idp login screen of the cbioportal - assertEquals(302, cbioIdpLoginRedirect.code); - String cbioIdpLoginLocation = cbioIdpLoginRedirect.headers.get("Location").get(0); - assertEquals(CBIO_URL + "/saml/login?disco=true&idp=spring.security.saml.idp.id", cbioIdpLoginLocation); - - //3. When we make a request to the cbio login page - HttpHelper.HttpResponse idpRedirect = HttpHelper.sendGetRequest(cbioIdpLoginLocation, null, cbioCookie); - //3. Then we get redirected to the saml idp site - assertEquals(302, idpRedirect.code); - String idpLocation = idpRedirect.headers.get("Location").get(0); - assertTrue(idpLocation.startsWith(IDP_URL + "/saml/idp/SSO/alias/boot-sample-idp?")); - - //4. When we make a request to the idp page - HttpHelper.HttpResponse idpLoginRedirect = HttpHelper.sendGetRequest(idpLocation, null, null); - //4. Then we get redirected to the saml idp login page - assertEquals(302, idpLoginRedirect.code); - String idpLoginLocation = idpLoginRedirect.headers.get("Location").get(0); - assertTrue(idpLoginLocation.startsWith(IDP_URL + "/login")); - //4. And we set the idp session cookie - String idpSetCookie = idpLoginRedirect.headers.get("Set-Cookie").get(0); - assertTrue(idpSetCookie.startsWith("JSESSIONID=")); - String idpCookie = idpSetCookie.split(";")[0]; - - // We skipped requesting the login page for the brevity - - //5. When we submit the login form - HttpHelper.HttpResponse idpLoginRepsonse = HttpHelper.sendPostRequest(idpLoginLocation, null, idpCookie, "username=user&password=password"); - //5. Then we get redirected to the saml idp site - assertEquals(302, idpLoginRepsonse.code); - String jumpToServiceProviderPageLocation = idpLoginRepsonse.headers.get("Location").get(0); - assertTrue(jumpToServiceProviderPageLocation.startsWith(IDP_URL + "/saml/idp/SSO/alias/boot-sample-idp?")); - //5. And we set the idp session cookie - idpSetCookie = idpLoginRepsonse.headers.get("Set-Cookie").get(0); - assertTrue(idpSetCookie.startsWith("JSESSIONID=")); - idpCookie = idpSetCookie.split(";")[0]; - - //6. When we reach the jump page - HttpHelper.HttpResponse jumpToServiceProviderPageRepsonse = HttpHelper.sendGetRequest(jumpToServiceProviderPageLocation, null, idpCookie); - //6. Then we get html page with javascript that redirects us to the service provider - assertEquals(200, jumpToServiceProviderPageRepsonse.code); - String jumpPage = jumpToServiceProviderPageRepsonse.body; - assertTrue(jumpPage.contains("form action=\"" + CBIO_URL + "/saml/SSO\"")); - String samlResponseValueStart = "name=\"SAMLResponse\" value=\""; - assertTrue(jumpPage.contains(samlResponseValueStart)); - int start = jumpPage.indexOf(samlResponseValueStart); - int end = jumpPage.indexOf("\"", start + samlResponseValueStart.length()); - String samlResponse = jumpPage.substring(start + samlResponseValueStart.length(), end); - - //7. When we submit the assertions to the consumer - HttpHelper.HttpResponse requestAssertionsConsumerRepsonse = HttpHelper - .sendPostRequest(CBIO_URL + "/saml/SSO", null, cbioCookie, - "SAMLResponse=" + URLEncoder.encode(samlResponse, "UTF-8")); - //7. Then we get redirected to originally requested page - assertEquals(302, requestAssertionsConsumerRepsonse.code); - String dataAccessTokenLocation = requestAssertionsConsumerRepsonse.headers.get("Location").get(0); - - assertEquals("/cbioportal/restore?key=login-redirect", dataAccessTokenLocation); - - //8. Finally we can reach the home page - HttpHelper.HttpResponse homePageResponse = HttpHelper.sendGetRequest(cbioPageUrl, null, cbioCookie); - assertEquals(200, homePageResponse.code); - assertFalse(homePageResponse.body.isEmpty()); - - } - - @Test - public void B_testDownloadOfflineToken() throws IOException { - String offlineTokenClaims = "{\"sub\": \"1234567890\"}"; - String encodedOfflineTokenClaims = encodeWithoutSigning(offlineTokenClaims); - new MockServerClient("localhost", IDP_PORT).when( - request() - .withMethod("POST") - .withPath("/auth/realms/cbio/token") - .withBody(subString("code=code1"))) - .respond( - response() - .withBody("{\"refresh_token\": \"" - + encodedOfflineTokenClaims - + "\"}")); - - HttpHelper.HttpResponse offlineTokenResponse = HttpHelper.sendGetRequest(CBIO_URL + "/api/data-access-token/oauth2?code=code1", null, cbioCookie); - - assertEquals(200, offlineTokenResponse.code); - assertTrue(offlineTokenResponse.headers.get("Content-Disposition").get(0).startsWith("attachment; filename=")); - assertEquals("token: " + encodedOfflineTokenClaims, offlineTokenResponse.body); - } - - private static ClientAndServer mockServer; - - @BeforeClass - public static void startServer() { - mockServer = startClientAndServer(IDP_PORT); - } - - @AfterClass - public static void stopServer() { - mockServer.stop(); - } -} diff --git a/portal/src/integration-tests/saml-oauth2-setup/testSamlKeystore.jks b/portal/src/integration-tests/saml-oauth2-setup/testSamlKeystore.jks deleted file mode 100644 index d11200252ed..00000000000 Binary files a/portal/src/integration-tests/saml-oauth2-setup/testSamlKeystore.jks and /dev/null differ diff --git a/portal/src/main/webapp/META-INF/context.xml b/portal/src/main/webapp/META-INF/context.xml deleted file mode 100644 index 095c6ecfc06..00000000000 --- a/portal/src/main/webapp/META-INF/context.xml +++ /dev/null @@ -1,2 +0,0 @@ - - diff --git a/portal/src/main/webapp/WEB-INF/web.xml b/portal/src/main/webapp/WEB-INF/web.xml deleted file mode 100755 index 320a84a1676..00000000000 --- a/portal/src/main/webapp/WEB-INF/web.xml +++ /dev/null @@ -1,685 +0,0 @@ - - - - - - - - ${tomcat.session.timeout} - COOKIE - - - wsdl - text/xml - - - index.jsp - - Cancer Genomics Portal - - - - - spring.profiles.active - \${dbconnector:dbcp},\${authenticate},\${google.analytics.tracking:ga-api-tracking-disabled} - - - spring.liveBeansView.mbeanDomain - \${dbconnector:dbcp},\${authenticate} - - - - contextConfigLocation - classpath:applicationContext-persistenceConnections.xml classpath:applicationContext-security.xml classpath:applicationContext-logging.xml - - - - webAppRootKey - \${app.name}.${timestamp} - - - - - org.springframework.web.context.ContextLoaderListener - - - - - org.apache.commons.fileupload.servlet.FileCleanerCleanup - - - - - - org.cbioportal.web.config.WebServletContextListener - - - - - - - - requestBodyGZipFilter - org.springframework.web.filter.DelegatingFilterProxy - - - requestBodyGZipFilter - /* - - - urlParamFilter - org.mskcc.cbio.portal.util.UrlParamFilter - - - urlParamFilter - /* - - - - CorsFilter - org.apache.catalina.filters.CorsFilter - - cors.allowed.origins - * - - - cors.allowed.methods - GET,POST,HEAD,OPTIONS - - - cors.allowed.headers - Origin,Accept,X-Requested-With,Content-Type,Access-Control-Request-Method,Access-Control-Request-Headers,Content-Encoding,X-Proxy-User-Agreement - - - - cors.exposed.headers - total-count,sample-count - - - cors.support.credentials - false - - - cors.preflight.maxage - 1800 - - - cors.request.decorate - true - - - - - CorsFilter - /* - - - - DebugHrrsFilter - org.mskcc.cbio.portal.util.DebugHrrsFilter - - - - DebugHrrsFilter - * - - - - springSecurityFilterChain - org.springframework.web.filter.DelegatingFilterProxy - - - - springSecurityFilterChain - /* - - - - - httpHeaderSecurity - org.apache.catalina.filters.HttpHeaderSecurityFilter - true - - antiClickJackingOption - SAMEORIGIN - - - - - httpHeaderSecurity - /* - - - - FileUpload - File Upload - - Applied to file upload requests. - Wraps the request, allowing it to be used as a regular request, - 'as if' it were parsed by the Servlet API. - - org.mskcc.cbio.portal.util.FileUploadFilter - - - - FileUpload - /netviz.jsp - - - - FileUpload - /oncoprint_converter.svg - - - - SessionServiceFilter - Session Service Filter - - This intercepts the request and puts a wrapper around it. If - session_id is a request parameter, then it is used to look up - the stored session using the session-service REST API, and - the stored session request parameters are then returned by the - wrapper on all calls to getParameter/getParameterMap/etc. If - session_id is not a request parameter, then this returns the current - request parameters as normal. - - org.mskcc.cbio.portal.util.SessionServiceFilter - - - - SessionServiceFilter - /data_download - /cross_cancer.do - - - - ResettableHttpServletRequestFilter - Reusable Http Servlet RequestFilter - This allows body of a request to be read multiple times. - org.cbioportal.web.util.ResettableHttpServletRequestFilter - - - ResettableHttpServletRequestFilter - /api/* - - - - - XssFilter - Xss Filter - - Applied to all requests to filter out malicious XSS attacks. - Wraps the request, allowing it to be used as a regular request, - 'as if' it were parsed by the Servlet API. - - org.mskcc.cbio.portal.util.XssFilter - - - - XssFilter - /* - - - - - - default - /js/* - /reactapp/* - /images/* - /css/* - - - - url_shortener - org.springframework.web.servlet.DispatcherServlet - - contextConfigLocation - classpath:applicationContext-url-shortener.xml - - 1 - - - url_shortener - /api/url-shortener - - - - api - org.springframework.web.servlet.DispatcherServlet - - contextConfigLocation - classpath:applicationContext-web.xml classpath:applicationContext-logging.xml - - 1 - - - api - /api/* - - - - proxy - org.springframework.web.servlet.DispatcherServlet - - contextConfigLocation - classpath:applicationContext-proxy.xml - - 1 - - - proxy - /proxy/* - - - - query_builder - org.mskcc.cbio.portal.servlet.QueryBuilder - - pathway_commons_url - ${pathway_commons.url} - - 1 - - - query_builder - /data_download - - - - webservice - org.mskcc.cbio.portal.servlet.WebService - - - webservice - /webservice.do - - - - portal_meta_data_json - org.mskcc.cbio.portal.servlet.PortalMetaDataJSON - - - portal_meta_data_json - /portal_meta_data.json - - - - portal_meta_data - org.mskcc.cbio.portal.servlet.PortalMetaData - - - portal_meta_data - /portalMetadata.json - - - - network_sbgn - org.mskcc.cbio.portal.servlet.NetworkSbgnServlet - - - network_sbgn - /networkSbgn.do - - - - bioGeneQuery - org.mskcc.cbio.portal.servlet.BioGeneServlet - - - bioGeneQuery - /bioGeneQuery.do - - - - CheckGeneSymbolJSON - org.mskcc.cbio.portal.servlet.CheckGeneSymbolJSON - - - CheckGeneSymbolJSON - /CheckGeneSymbol.json - - - - ClinicalFreeFormJSON - org.mskcc.cbio.portal.servlet.ClinicalFreeFormJSON - - - ClinicalFreeFormJSON - /ClinicalFreeForm.json - - - - oma_redirect - org.mskcc.cbio.portal.servlet.OmaRedirectServlet - - - oma_redirect - /omaRedirect.do - - - - mutation_aligner_json - org.mskcc.cbio.portal.servlet.MutationAlignerServlet - - - mutation_aligner_json - /getMutationAligner.json - - - - oncoprint_converter - org.mskcc.cbio.portal.servlet.OncoPrintConverter - - - oncoprint_converter - /oncoprint_converter.svg - - - - MutSigJSON - org.mskcc.cbio.portal.servlet.MutSigJSON - - - MutSigJSON - /MutSig.json - - - - GisticJSON - org.mskcc.cbio.portal.servlet.GisticJSON - - - GisticJSON - /Gistic.json - - - - PancancerMutationsJSON - org.mskcc.cbio.portal.servlet.PancancerMutationsJSON - - - PancancerMutationsJSON - /pancancerMutations.json - - - - EchoFile - org.mskcc.cbio.portal.servlet.EchoFile - - - EchoFile - /echofile - - - - ClinicalJSON - org.mskcc.cbio.portal.servlet.ClinicalJSON - - - ClinicalJSON - /clinical.json - - - - ClinicalAttributesServlet - org.mskcc.cbio.portal.servlet.ClinicalAttributesServlet - - - ClinicalAttributesServlet - /clinicalAttributes.json - - - - ClinicalTimelineData - org.mskcc.cbio.portal.servlet.ClinicalTimelineData - - - ClinicalTimelineData - /clinical_timeline_data.json - - - - patient_view - org.mskcc.cbio.portal.servlet.PatientView - - - - CrossCancerJSON - org.mskcc.cbio.portal.servlet.CrossCancerJSON - - - CrossCancerJSON - /crosscancerquery.json - - - - CheckDarwinAccessServlet - org.mskcc.cbio.portal.servlet.CheckDarwinAccessServlet - - - CheckDarwinAccessServlet - /checkDarwinAccess.do - - - - CnaJSON - org.mskcc.cbio.portal.servlet.CnaJSON - - - CnaJSON - /cna.json - - - - SVGtoPDFConverter - org.mskcc.cbio.portal.servlet.SvgConverter - - - SVGtoPDFConverter - /svgtopdf.do - - - - SimilarPatientsJSON - org.mskcc.cbio.portal.servlet.SimilarPatientsJSON - - - SimilarPatientsJSON - /similar_patients.json - - - - - GetProteinArrayDataJSON - org.mskcc.cbio.portal.servlet.GetProteinArrayDataJSON - - - GetProteinArrayDataJSON - /getProteinArrayData.json - - - - GetSurvivalDataJSON - org.mskcc.cbio.portal.servlet.GetSurvivalDataJSON - - - GetSurvivalDataJSON - /getSurvivalData.json - - - - IGVLinkingJSON - org.mskcc.cbio.portal.servlet.IGVLinkingJSON - - - IGVLinkingJSON - /igvlinking.json - - - - CalcChiDistribution - org.mskcc.cbio.portal.servlet.SurvivalChiSquareDistributionCalc - - - CalcChiDistribution - /calcPval.do - - - - GetCoExpJson - org.mskcc.cbio.portal.servlet.GetCoExpressionJSON - - - GetCoExpJson - /getCoExp.do - - - - calcCoExp - org.mskcc.cbio.portal.servlet.CalcCoExp - - - calcCoExp - /calcCoExp.do - - - - calcFisherExactTest - org.mskcc.cbio.portal.servlet.CalcFisherExactTest - - - calcFisherExactTest - /calcFisherExact.do - - - - - - LoginJSP - /login.jsp - - - LoginJSP - /login.jsp - - - NetworksJSP - /networks.jsp - - - NetworksJSP - /networks.jsp - - - ReleaseNotesMutationMapperJSP - /release_notes_mutation_mapper.jsp - - - ReleaseNotesMutationMapperJSP - /release_notes_mutation_mapper.jsp - - - ReleaseNotesOncoprinterJSP - /release_notes_oncoprinter.jsp - - - ReleaseNotesOncoprinterJSP - /release_notes_oncoprinter.jsp - - - RestfulLoginJSP - /restful_login.jsp - - - RestfulLoginJSP - /restful_login.jsp - - - SciSignalReprintJSP - /sci_signal_reprint.jsp - - - SciSignalReprintJSP - /sci_signal_reprint.jsp - - - TrackingIncludeJSP - /tracking_include.jsp - - - TrackingIncludeJSP - /tracking_include.jsp - - - - SinglePageApplication - /index.jsp - - - - SinglePageApplication - /results/* - /patient/* - /study/* - /mutation_mapper/* - /index.do/* - /case.do/* - /study.do/* - /loading/* - /comparison/* - /restore - / - - - - SiteMapIndex - /sitemap_index.jsp - - - - SiteMapIndex - /sitemap_index.xml - - - - SiteMapStudy - /sitemap_study.jsp - - - SiteMapStudy - /sitemap_study.xml - - - - RobotsIndex - /robots.jsp - - - RobotsIndex - /robots.txt - - - - SiteConfiguration - /config_service.jsp - - - SiteConfiguration - /config_service.json - - - - org.springframework.security.web.firewall.RequestRejectedException - /error.html - - - diff --git a/portal/src/main/webapp/images/msk_logo_transparent_2023.png b/portal/src/main/webapp/images/msk_logo_transparent_2023.png deleted file mode 100644 index 25f0bd706bb..00000000000 Binary files a/portal/src/main/webapp/images/msk_logo_transparent_2023.png and /dev/null differ diff --git a/portal/src/main/webapp/images/msk_logo_transparent_black_2023.png b/portal/src/main/webapp/images/msk_logo_transparent_black_2023.png deleted file mode 100644 index 5c87ff7dc72..00000000000 Binary files a/portal/src/main/webapp/images/msk_logo_transparent_black_2023.png and /dev/null differ diff --git a/portal/src/org/mskcc/cgds/dao/DaoOncotatorCache.java b/portal/src/org/mskcc/cgds/dao/DaoOncotatorCache.java deleted file mode 100644 index 8a71b00e792..00000000000 --- a/portal/src/org/mskcc/cgds/dao/DaoOncotatorCache.java +++ /dev/null @@ -1,131 +0,0 @@ -package org.mskcc.cgds.dao; - -import org.mskcc.portal.oncotator.OncotatorRecord; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; - -/** - * DAO for Oncotator Cache Table. - * - */ -public class DaoOncotatorCache { - // use a MySQLbulkLoader instead of SQL "INSERT" statements to load data into table - private static MySQLbulkLoader myMySQLbulkLoader = null; - private static DaoOncotatorCache daoOncotatorCache; - - private DaoOncotatorCache() { - } - - /** - * Gets Singleton Instance. - * @return DaoOncotator Object. - */ - public static DaoOncotatorCache getInstance() { - if (daoOncotatorCache == null) { - daoOncotatorCache = new DaoOncotatorCache(); - } - - if (myMySQLbulkLoader == null) { - myMySQLbulkLoader = new MySQLbulkLoader("oncotator_cache"); - } - return daoOncotatorCache; - } - - /* - * Adds a new Cache Record to the Database. - * - * @param mutSig Mut Sig Object. - * @return number of records successfully added. - * @throws DaoException Database Error. - */ - - public int put(OncotatorRecord record) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - MySQLbulkLoader.bulkLoadOff(); - try { - if (MySQLbulkLoader.isBulkLoad()) { - // write to the temp file maintained by the MySQLbulkLoader - myMySQLbulkLoader.insertRecord(record.getKey(), - record.getGene(), record.getGenomeChange(), - record.getProteinChange(), record.getVariantClassification(), - Integer.toString(record.getExonAffected()), - record.getCosmicOverlappingMutations(), record.getDbSnpRs()); - // return 1 because normal insert will return 1 if no error occurs - return 1; - } else { - con = JdbcUtil.getDbConnection(); - pstmt = con.prepareStatement - ("INSERT INTO oncotator_cache (`CACHE_KEY`,`GENE_SYMBOL`, `GENOME_CHANGE`, `PROTEIN_CHANGE`," + - " `VARIANT_CLASSIFICATION`," + - " `EXON_AFFECTED`, `COSMIC_OVERLAP`, `DB_SNP_RS`)" + - " VALUES (?,?,?,?,?,?,?,?)"); - pstmt.setString(1, record.getKey()); - pstmt.setString(2, record.getGene()); - pstmt.setString(3, record.getGenomeChange()); - pstmt.setString(4, record.getProteinChange()); - pstmt.setString(5, record.getVariantClassification()); - pstmt.setInt(6, record.getExonAffected()); - pstmt.setString(7, record.getCosmicOverlappingMutations()); - pstmt.setString(8, record.getDbSnpRs()); - int rows = pstmt.executeUpdate(); - return rows; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(con, pstmt, rs); - } - } - - //getMutSig from a hugoGeneSymbol - - public OncotatorRecord get(String key) throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(); - pstmt = con.prepareStatement - ("SELECT * FROM oncotator_cache WHERE CACHE_KEY = ?"); - pstmt.setString(1, key); - rs = pstmt.executeQuery(); - if (rs.next()) { - OncotatorRecord record = new OncotatorRecord(rs.getString("CACHE_KEY")); - record.setGene(rs.getString("GENE_SYMBOL")); - record.setGenomeChange(rs.getString("GENOME_CHANGE")); - record.setProteinChange(rs.getString("PROTEIN_CHANGE")); - record.setVariantClassification(rs.getString("VARIANT_CLASSIFICATION")); - record.setCosmicOverlappingMutations(rs.getString("COSMIC_OVERLAP")); - record.setExonAffected(rs.getInt("EXON_AFFECTED")); - record.setDbSnpRs(rs.getString("DB_SNP_RS")); - return record; - } else { - return null; - } - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(con, pstmt, rs); - } - } - - public void deleteAllRecords() throws DaoException { - Connection con = null; - PreparedStatement pstmt = null; - ResultSet rs = null; - try { - con = JdbcUtil.getDbConnection(); - pstmt = con.prepareStatement("TRUNCATE TABLE oncotator_cache"); - pstmt.executeUpdate(); - } catch (SQLException e) { - throw new DaoException(e); - } finally { - JdbcUtil.closeAll(con, pstmt, rs); - } - } -} \ No newline at end of file diff --git a/portal/src/org/mskcc/cgds/scripts/PostLiftOver.java b/portal/src/org/mskcc/cgds/scripts/PostLiftOver.java deleted file mode 100644 index dc6c7bfd673..00000000000 --- a/portal/src/org/mskcc/cgds/scripts/PostLiftOver.java +++ /dev/null @@ -1,398 +0,0 @@ -package org.mskcc.cgds.scripts; - -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileReader; -import java.io.FileWriter; -import java.io.IOException; - -import org.mskcc.portal.model.MafRecord; -import org.mskcc.portal.util.MafUtil; - -/** - * Post-process class for the lift over tool. Updates coordinates of each - * mutation in the input MAF file by using the output files created by the - * left over tool. - * - * @author Selcuk Onur Sumer - * - */ -public class PostLiftOver -{ - - /** - * Arguments: - * 1) original input (MAF) file. - * 2) mapped file created by the liftOver tool. - * 3) unmapped file created by the liftOver tool. - * 4) name of the new output file to be created. - */ - public static void main(String[] args) - { - String originialFile = args[0]; - String mappedFile = args[1]; - String unmappedFile = args[2]; - String auxFile = args[3]; - String outputMaf = args[4]; - - try - { - // sanity check: assert (# of entries in original file) == - // (total # of entries in both mapped & unmapped file) - // if not, then it means there is an error during lift over process - if (sizeMismatch(originialFile, - mappedFile, - unmappedFile)) - { - System.out.println("Input sizes do not match! Error while lifting over?"); - } - else - { - updatePositions(originialFile, - mappedFile, - unmappedFile, - auxFile, - outputMaf); - } - - } - catch (IOException e) - { - System.out.println("Error while processing files: " + e.getMessage()); - e.printStackTrace(); - } - } - - /** - * Updates the positions of the source input file by using mapped and - * unmapped outputs. Writes the results to the given output file. This - * function assumes that liftOver script runs without any problems. - * In other words, this function works correctly if the number of entries - * in the input file is equal to the total number of entries in the - * mapped and unmapped files. Otherwise resulting output MAF file may - * contain incorrect information. - * - * @param inputFile original input MAF file - * @param mappedFile mapped file created by liftOver - * @param unmappedFile unmapped file created by liftOver - * @param outputFile output file with updated coordinates - * @param auxFile aux file containing info of position-adjusted rows - * @throws IOException if an IO error occurs - */ - public static void updatePositions(String inputFile, - String mappedFile, - String unmappedFile, - String auxFile, - String outputFile) throws IOException - { - BufferedReader sourceIn = new BufferedReader( - new FileReader(inputFile)); - BufferedReader mappedIn = new BufferedReader( - new FileReader(mappedFile)); - BufferedReader unmappedIn = new BufferedReader( - new FileReader(unmappedFile)); - BufferedReader auxIn = new BufferedReader( - new FileReader(auxFile)); - - BufferedWriter bufWriter = new BufferedWriter( - new FileWriter(outputFile)); - - String headerLine = sourceIn.readLine(); - MafUtil util = new MafUtil(headerLine); - String sourceLine; - String mappedLine = mappedIn.readLine(); - String unmappedLine = getUnmappedLine(unmappedIn); - Integer modifiedRow = getNextModRow(auxIn); - MafRecord record; - - // for tracking purposes - int sourceRow = 2; // (including header) - int mappedRow = 1; - int unmappedRow = 1; - boolean modified; - - // write the header line to the output - bufWriter.write(headerLine); - bufWriter.newLine(); - - while ((sourceLine = sourceIn.readLine()) != null) - { - // get a single record per line - record = util.parseRecord(sourceLine); - - // check if positions of current record is modified by PreLiftOver - if (modifiedRow != null && - sourceRow == modifiedRow) - { - modified = true; - modifiedRow = getNextModRow(auxIn); - } - else - { - modified = false; - } - - // check if current record matches the unmapped file - if (unmappedLine != null && - isUnmapped(record, unmappedLine)) - { - System.out.println("[warning] cannot lift over (line:" + sourceRow + "): " + - "[gene:" + record.getHugoGeneSymbol() + "] " + unmappedLine); - - // skip unmapped lines (do not include in the output file) - // bufWriter.write(sourceLine); - - // get next line from unmapped file - unmappedLine = getUnmappedLine(unmappedIn); - - unmappedRow++; - } - // record is lifted over successfully, update the positions - else - { - String[] mappedParts = mappedLine.split("\\s"); - - String sourceChr = record.getChr(); - - if (sourceChr.equals("MT")) - { - sourceChr = "M"; - } - - StringBuffer buffer = new StringBuffer(); - - long startPos = Long.parseLong(mappedParts[1]); - long endPos = Long.parseLong(mappedParts[2]); - boolean chrChanged = false; - - if (!mappedParts[0].equals("chr" + sourceChr)) - { - // print a warning message about the chromosome number change.. - System.out.println("[warning] chromosome numbers mismatch (gene:" + record.getHugoGeneSymbol() + ")"); - System.out.println("source(line:" + sourceRow + "): chr" + sourceChr + " " + - record.getStartPosition() + " " + - record.getEndPosition()); - System.out.println("mapped(line:" + mappedRow + "): " + mappedLine); - - chrChanged = true; - } - - // re-adjust start & end positions (to be compatible with oncotator) - if (modified) - { - startPos++; - } - - // below condition check may also work for all records, - // but using modified row number is the safest way. -// if (startPos == endPos - 1 && -// !record.getReferenceAllele().equals("-") && -// record.getReferenceAllele().length() == 1) -// { -// startPos++; -// } - - String sourceParts[] = sourceLine.split("\t", -1); - - // update start & end positions - for (int i = 0; i < sourceParts.length; i++) - { - if (util.getStartPositionIndex() == i) - { - // replace with new start position - buffer.append(startPos); - } - else if (util.getEndPositionIndex() == i) - { - // replace with new end position - buffer.append(endPos); - } - else if (chrChanged && - util.getChrIndex() == i) - { - // replace with new chr number - buffer.append(mappedParts[0].replaceAll("chr", "")); - } - else if (util.getNcbiIndex() == i) - { - // also update the build from 18 to 19 (36 to 37) - buffer.append(record.getNcbiBuild().replace( - "18", "19").replace("36.1", "37").replace( - "36", "37")); - } - else - { - // just copy the original content - buffer.append(sourceParts[i]); - } - - if (i < sourceParts.length - 1) - { - buffer.append("\t"); - } - } - - // update record and write to output - bufWriter.write(buffer.toString()); - bufWriter.newLine(); - - // get next line from mapped file - mappedLine = mappedIn.readLine(); - - mappedRow++; - } - - sourceRow++; - } - - sourceIn.close(); - mappedIn.close(); - unmappedIn.close(); - auxIn.close(); - bufWriter.close(); - } - - /** - * Compares original input file to the two output files created by - * the liftOver tool to verify that number of entries in the original - * input file is equal to total number of entries in both the mapped - * and the unmapped files. - * - * @param inputFile original input - * @param mappedFile mapped file (created by liftOver) - * @param unmappedFile unmapped file (created by liftOver) - * @return true if sizes mismatch, false otherwise - * @throws IOException if an IO error occurs - */ - private static boolean sizeMismatch(String inputFile, - String mappedFile, - String unmappedFile) throws IOException - { - BufferedReader sourceIn = new BufferedReader( - new FileReader(inputFile)); - BufferedReader mappedIn = new BufferedReader( - new FileReader(mappedFile)); - BufferedReader unmappedIn = new BufferedReader( - new FileReader(unmappedFile)); - - int sourceCount = 0; - int mappedCount = 0; - int unmappedCount = 0; - - while (sourceIn.readLine() != null) - { - sourceCount++; - } - - sourceIn.close(); - - while (mappedIn.readLine() != null) - { - mappedCount++; - } - - mappedIn.close(); - - while (getUnmappedLine(unmappedIn) != null) - { - unmappedCount++; - } - - unmappedIn.close(); - - - boolean mismatch = true; - - if (sourceCount - 1 == mappedCount + unmappedCount) - { - mismatch = false; - } - - return mismatch; - } - - /** - * Checks if the given record is in the unmapped file (created by liftOver). - * - * @param record record to be checked - * @param unmappedLine a line from the unmapped file - * @return true if the record is unmapped, false otherwise - */ - private static boolean isUnmapped(MafRecord record, - String unmappedLine) - { - boolean unmapped = false; - String[] parts = unmappedLine.split("\\s"); - - // adjust startPos & chr to match liftOver output - // (because they are adjusted in PreLiftOver to create an input - // compatible with liftOver tool) - - long startPos = record.getStartPosition(); - long endPos = record.getEndPosition(); - - if (startPos == endPos) - { - startPos--; - } - - String chr = record.getChr(); - - if (chr.equals("MT")) - { - chr = "M"; - } - - // compare chr, start & end positions - if (parts[0].equals("chr" + chr) && - startPos == Long.parseLong(parts[1]) && - endPos == Long.parseLong(parts[2])) - { - unmapped = true; - } - - return unmapped; - } - - /** - * Skips any comment lines and retrieves a data line from the unmapped file - * (created by liftOver). - * - * @param unmappedIn input reader for the unmapped file - * @return a data line from the unmapped file, or null if EOF - * @throws IOException if an IO error occurs - */ - private static String getUnmappedLine(BufferedReader unmappedIn) throws IOException - { - String unmappedLine = unmappedIn.readLine(); - - while (unmappedLine != null && - unmappedLine.trim().startsWith("#")) - { - unmappedLine = unmappedIn.readLine(); - } - - return unmappedLine; - } - - /** - * Retrieves the next modified row (record) number from the aux file. - * If there is no more row number, then returns null. - * - * @param auxIn aux file reader - * @return next modified row number - * @throws IOException if an IO error occurs - */ - private static Integer getNextModRow(BufferedReader auxIn) throws IOException - { - String line = auxIn.readLine(); - Integer row = null; - - if (line != null) - { - row = Integer.parseInt(line); - } - - return row; - } -} diff --git a/portal/src/org/mskcc/cgds/scripts/PreLiftOver.java b/portal/src/org/mskcc/cgds/scripts/PreLiftOver.java deleted file mode 100644 index 39b7dd27262..00000000000 --- a/portal/src/org/mskcc/cgds/scripts/PreLiftOver.java +++ /dev/null @@ -1,111 +0,0 @@ -package org.mskcc.cgds.scripts; - -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileReader; -import java.io.FileWriter; -import java.io.IOException; - -import org.mskcc.portal.model.MafRecord; -import org.mskcc.portal.util.MafUtil; - -/** - * Pre-process class for the lift over tool. Extracts information from and input MAF file, - * and creates an output file compatible with the lift over tool. - * Each line of the output file represents a mutation: - * chr# chr_start chr_end - * - * @author Selcuk Onur Sumer - * - */ -public class PreLiftOver -{ - public static void main(String[] args) - { - String inputMaf = args[0]; - - try - { - extractPositions(inputMaf, "oldfile.txt", "auxfile.txt"); - } - catch (IOException e) - { - System.out.println("Error while processing input: " + - e.getMessage()); - - e.printStackTrace(); - } - } - - /** - * Extracts start & end position information from the given input (MAF) - * file and creates the main output file. Also, creates an aux file - * to store the row number with adjusted positions (for lift over) - * - * @param inputFile - * @param outputFile - * @param auxFile - * @throws IOException - */ - public static void extractPositions(String inputFile, - String outputFile, - String auxFile) throws IOException - { - BufferedReader bufReader = new BufferedReader( - new FileReader(inputFile)); - BufferedWriter bufWriter = new BufferedWriter( - new FileWriter(outputFile)); - BufferedWriter auxWriter = new BufferedWriter( - new FileWriter(auxFile)); - - String headerLine = bufReader.readLine(); - MafUtil util = new MafUtil(headerLine); - String line; - MafRecord record; - - long startPos, endPos; - String chr; - int row = 2; // including header - - while ((line = bufReader.readLine()) != null) - { - record = util.parseRecord(line); - startPos = record.getStartPosition(); - endPos = record.getEndPosition(); - - // if start&end pos are the same, then the coordinate range - // in BED format specifies a region of size 0. - // BED coordinates are zero-based, half-open. See: - // http://genome.ucsc.edu/FAQ/FAQformat.html#format1 - // and - // http://genomewiki.ucsc.edu/index.php/Coordinate_Transforms - if (startPos == endPos) - { - // adjust start position - startPos--; - - // write line number to the aux file for reference in PostLiftOver - // to the adjusted lines - auxWriter.write(Integer.toString(row)); - auxWriter.newLine(); - } - - chr = record.getChr(); - - // chrMT is not recognized so replace it with M - if (chr.equals("MT")) - { - chr = "M"; - } - - bufWriter.write("chr" + chr + "\t" + startPos + "\t" + endPos); - bufWriter.newLine(); - - row++; - } - - bufReader.close(); - bufWriter.close(); - auxWriter.close(); - } -} diff --git a/portal/src/org/mskcc/cgds/test/dao/TestDaoOncotatorCache.java b/portal/src/org/mskcc/cgds/test/dao/TestDaoOncotatorCache.java deleted file mode 100644 index 69696c106a9..00000000000 --- a/portal/src/org/mskcc/cgds/test/dao/TestDaoOncotatorCache.java +++ /dev/null @@ -1,49 +0,0 @@ -package org.mskcc.cgds.test.dao; - -import junit.framework.TestCase; -import org.mskcc.cgds.dao.DaoException; -import org.mskcc.cgds.dao.DaoGeneOptimized; -import org.mskcc.cgds.dao.DaoMutSig; -import org.mskcc.cgds.dao.DaoOncotatorCache; -import org.mskcc.cgds.model.CanonicalGene; -import org.mskcc.cgds.model.MutSig; -import org.mskcc.cgds.scripts.ResetDatabase; -import org.mskcc.portal.oncotator.OncotatorRecord; - -/** - * Tests the DaoOncotator Cache. - */ -public class TestDaoOncotatorCache extends TestCase { - - /** - * Tests DaoOncotator. - * - */ - public void testDaoOncotator() throws DaoException { - ResetDatabase.resetDatabase(); - - OncotatorRecord record = new OncotatorRecord("cbio_123"); - record.setCosmicOverlappingMutations("cosmic"); - record.setExonAffected(2); - record.setGene("TP53"); - record.setGenomeChange("genomic"); - record.setProteinChange("protein"); - record.setVariantClassification("missense"); - record.setDbSnpRs("db_snp"); - DaoOncotatorCache cache = DaoOncotatorCache.getInstance(); - int numRecords = cache.put(record); - assertEquals(1, numRecords); - - record = cache.get("cbio_123"); - assertEquals("cbio_123", record.getKey()); - assertEquals("cosmic", record.getCosmicOverlappingMutations()); - assertEquals("TP53", record.getGene()); - assertEquals("genomic", record.getGenomeChange()); - assertEquals("protein", record.getProteinChange()); - assertEquals("missense", record.getVariantClassification()); - assertEquals("db_snp", record.getDbSnpRs()); - } - -} - - diff --git a/portal/src/org/mskcc/portal/model/MafRecord.java b/portal/src/org/mskcc/portal/model/MafRecord.java deleted file mode 100644 index 78cef29dfd6..00000000000 --- a/portal/src/org/mskcc/portal/model/MafRecord.java +++ /dev/null @@ -1,377 +0,0 @@ -package org.mskcc.portal.model; - -/** - * Encapsulates Details Regarding a Single MAF Record. - */ -public class MafRecord { - public final static String NA_STRING = "NA"; - public final static long NA_LONG = -1L; - public final static int NA_INT = -1; - - private String chr; - private String ncbiBuild; - private long startPosition; - private long endPosition; - private String hugoGeneSymbol; - private long entrezGeneId; - private String referenceAllele; - private String variantClassification; // mutation type - private String variantType; - private String center; // sequencing center - private String strand; - private String tumorSeqAllele1; - private String tumorSeqAllele2; - private String dbSNP_RS; - private String tumorSampleID; - private String mutationStatus; - private String validationStatus; - - private String sequencer; - private String dbSnpValStatus; - private String matchedNormSampleBarcode; - private String matchNormSeqAllele1; - private String matchNormSeqAllele2; - private String tumorValidationAllele1; - private String tumorValidationAllele2; - private String matchNormValidationAllele1; - private String matchNormValidationAllele2; - private String verificationStatus; - private String sequencingPhase; - private String sequenceSource; - private String validationMethod; - private String score; - private String bamFile; - - private int tumorAltCount; - private int tumorRefCount; - private int normalAltCount; - private int normalRefCount; - - private String mafProteinChange; - private String mafVariantClassification; - private String mafCosmicOverlapping; - private String mafDbSnpRs; - - public String getChr() { - return chr; - } - - public void setChr(String chr) { - this.chr = chr; - } - - public String getNcbiBuild() { - return ncbiBuild; - } - - public void setNcbiBuild(String ncbiBuild) { - this.ncbiBuild = ncbiBuild; - } - - public long getStartPosition() { - return startPosition; - } - - public void setStartPosition(long startPosition) { - this.startPosition = startPosition; - } - - public long getEndPosition() { - return endPosition; - } - - public void setEndPosition(long endPosition) { - this.endPosition = endPosition; - } - - public String getHugoGeneSymbol() { - return hugoGeneSymbol; - } - - public void setHugoGeneSymbol(String hugoGeneSymbol) { - this.hugoGeneSymbol = hugoGeneSymbol; - } - - public long getEntrezGeneId() { - return entrezGeneId; - } - - public void setEntrezGeneId(long entrezGeneId) { - this.entrezGeneId = entrezGeneId; - } - - public String getReferenceAllele() { - return referenceAllele; - } - - public void setReferenceAllele(String referenceAllele) { - this.referenceAllele = referenceAllele; - } - - public String getVariantClassification() { - return variantClassification; - } - - public void setVariantClassification(String variantClassification) { - this.variantClassification = variantClassification; - } - - public String getVariantType() { - return variantType; - } - - public void setVariantType(String variantType) { - this.variantType = variantType; - } - - public String getCenter() { - return center; - } - - public void setCenter(String center) { - this.center = center; - } - - public String getStrand() { - return strand; - } - - public void setStrand(String strand) { - this.strand = strand; - } - - public String getTumorSeqAllele1() { - return tumorSeqAllele1; - } - - public void setTumorSeqAllele1(String tumorSeqAllele1) { - this.tumorSeqAllele1 = tumorSeqAllele1; - } - - public String getTumorSeqAllele2() { - return tumorSeqAllele2; - } - - public void setTumorSeqAllele2(String tumorSeqAllele2) { - this.tumorSeqAllele2 = tumorSeqAllele2; - } - - public String getDbSNP_RS() { - return dbSNP_RS; - } - - public void setDbSNP_RS(String dbSNP_RS) { - this.dbSNP_RS = dbSNP_RS; - } - - public String getTumorSampleID() { - return tumorSampleID; - } - - public void setTumorSampleID(String tumorSampleID) { - this.tumorSampleID = tumorSampleID; - } - - public String getMutationStatus() { - return mutationStatus; - } - - public void setMutationStatus(String mutationStatus) { - this.mutationStatus = mutationStatus; - } - - public String getValidationStatus() { - return validationStatus; - } - - public void setValidationStatus(String validationStatus) { - this.validationStatus = validationStatus; - } - - public String getSequencer() { - return sequencer; - } - - public void setSequencer(String sequencer) { - this.sequencer = sequencer; - } - - public String getDbSnpValStatus() { - return dbSnpValStatus; - } - - public void setDbSnpValStatus(String dbSnpValStatus) { - this.dbSnpValStatus = dbSnpValStatus; - } - - public String getMatchedNormSampleBarcode() { - return matchedNormSampleBarcode; - } - - public void setMatchedNormSampleBarcode(String matchedNormSampleBarcode) { - this.matchedNormSampleBarcode = matchedNormSampleBarcode; - } - - public String getMatchNormSeqAllele1() { - return matchNormSeqAllele1; - } - - public void setMatchNormSeqAllele1(String matchNormSeqAllele1) { - this.matchNormSeqAllele1 = matchNormSeqAllele1; - } - - public String getMatchNormSeqAllele2() { - return matchNormSeqAllele2; - } - - public void setMatchNormSeqAllele2(String matchNormSeqAllele2) { - this.matchNormSeqAllele2 = matchNormSeqAllele2; - } - - public String getTumorValidationAllele1() { - return tumorValidationAllele1; - } - - public void setTumorValidationAllele1(String tumorValidationAllele1) { - this.tumorValidationAllele1 = tumorValidationAllele1; - } - - public String getTumorValidationAllele2() { - return tumorValidationAllele2; - } - - public void setTumorValidationAllele2(String tumorValidationAllele2) { - this.tumorValidationAllele2 = tumorValidationAllele2; - } - - public String getMatchNormValidationAllele1() { - return matchNormValidationAllele1; - } - - public void setMatchNormValidationAllele1(String matchNormValidationAllele1) { - this.matchNormValidationAllele1 = matchNormValidationAllele1; - } - - public String getMatchNormValidationAllele2() { - return matchNormValidationAllele2; - } - - public void setMatchNormValidationAllele2(String matchNormValidationAllele2) { - this.matchNormValidationAllele2 = matchNormValidationAllele2; - } - - public String getVerificationStatus() { - return verificationStatus; - } - - public void setVerificationStatus(String verificationStatus) { - this.verificationStatus = verificationStatus; - } - - public String getSequencingPhase() { - return sequencingPhase; - } - - public void setSequencingPhase(String sequencingPhase) { - this.sequencingPhase = sequencingPhase; - } - - public String getSequenceSource() { - return sequenceSource; - } - - public void setSequenceSource(String sequenceSource) { - this.sequenceSource = sequenceSource; - } - - public String getValidationMethod() { - return validationMethod; - } - - public void setValidationMethod(String validationMethod) { - this.validationMethod = validationMethod; - } - - public String getScore() { - return score; - } - - public void setScore(String score) { - this.score = score; - } - - public String getBamFile() { - return bamFile; - } - - public void setBamFile(String bamFile) { - this.bamFile = bamFile; - } - - public int getTumorAltCount() { - return tumorAltCount; - } - - public void setTumorAltCount(int tumorAltCount) { - this.tumorAltCount = tumorAltCount; - } - - public int getTumorRefCount() { - return tumorRefCount; - } - - public void setTumorRefCount(int tumorRefCount) { - this.tumorRefCount = tumorRefCount; - } - - public int getNormalAltCount() { - return normalAltCount; - } - - public void setNormalAltCount(int normalAltCount) { - this.normalAltCount = normalAltCount; - } - - public int getNormalRefCount() { - return normalRefCount; - } - - public void setNormalRefCount(int normalRefCount) { - this.normalRefCount = normalRefCount; - } - - public String getMafProteinChange() { - return mafProteinChange; - } - - public void setMafProteinChange(String mafProteinChange) { - this.mafProteinChange = mafProteinChange; - } - - public String getMafVariantClassification() { - return mafVariantClassification; - } - - public void setMafVariantClassification( - String mafVariantClassification) { - this.mafVariantClassification = mafVariantClassification; - } - - public String getMafCosmicOverlapping() { - return mafCosmicOverlapping; - } - - public void setMafCosmicOverlapping(String mafCosmicOverlapping) { - this.mafCosmicOverlapping = mafCosmicOverlapping; - } - - public String getMafDbSnpRs() { - return mafDbSnpRs; - } - - public void setMafDbSnpRs(String mafDbSnpRs) { - this.mafDbSnpRs = mafDbSnpRs; - } - - -} diff --git a/portal/src/org/mskcc/portal/oncotator/OncotateTool.java b/portal/src/org/mskcc/portal/oncotator/OncotateTool.java deleted file mode 100644 index 0076122cc6e..00000000000 --- a/portal/src/org/mskcc/portal/oncotator/OncotateTool.java +++ /dev/null @@ -1,261 +0,0 @@ -package org.mskcc.portal.oncotator; - -import org.mskcc.cgds.dao.DaoException; -import org.mskcc.portal.model.MafRecord; -import org.mskcc.portal.util.MafUtil; - -import java.io.*; -import java.util.Date; -import java.util.HashMap; - -/** - * Command Line Tool to Oncotate a Single MAF File. - */ -public class OncotateTool { - private final static String TAB = "\t"; - private int buildNumErrors = 0; - private OncotatorService oncotatorService = OncotatorService.getInstance(); - private static int MAX_NUM_RECORDS_TO_PROCESS = -1; - private static int ONCO_HEADERS_COUNT = 5; - private HashMap genomicCountMap = new HashMap(); - - public OncotateTool(File inputMafFile, File outputMafFile) throws IOException, DaoException { - outputFileNames(inputMafFile, outputMafFile); - FileReader reader = new FileReader(inputMafFile); - BufferedReader bufReader = new BufferedReader(reader); - String headerLine = bufReader.readLine(); - MafUtil mafUtil = new MafUtil(headerLine); - String dataLine = bufReader.readLine(); - - int numRecordsProcessed = 0; - FileWriter writer = new FileWriter(outputMafFile); - - writeHeaders(headerLine, writer); - - while (dataLine != null) - { - MafRecord mafRecord = mafUtil.parseRecord(dataLine); - String variantClassification = mafRecord.getVariantClassification(); - - // adjust data line before writing to make sure the consistency - // among the lines - writer.write(this.adjustDataLine(dataLine, mafUtil)); - - // Skip Silent Mutations - if (!variantClassification.equalsIgnoreCase("Silent")) { - conditionallyOncotateRecord(mafRecord, writer); - numRecordsProcessed++; - conditionallyAbort(numRecordsProcessed); - } else { - writeEmptyDataFields(writer); - } - writer.write("\n"); - dataLine = bufReader.readLine(); - } - - System.out.println("Total Number of Records Processed: " + numRecordsProcessed); - for (String coords: genomicCountMap.keySet()) { - Integer count = genomicCountMap.get(coords); - if (count > 1) { - System.out.println(coords + "\t" + (count-1)); - } - } - - reader.close(); - writer.close(); - } - - private void outputFileNames(File inputMafFile, File outputMafFile) { - System.out.println("Reading MAF From: " + inputMafFile.getAbsolutePath()); - System.out.println("Writing new MAF To: " + outputMafFile.getAbsolutePath()); - } - - private void conditionallyAbort(int numRecordsProcessed) { - if (MAX_NUM_RECORDS_TO_PROCESS > 0 && numRecordsProcessed > MAX_NUM_RECORDS_TO_PROCESS) { - throw new IllegalStateException("Aborting at " + MAX_NUM_RECORDS_TO_PROCESS + " records"); - } - } - - private void writeEmptyDataFields(FileWriter writer) throws IOException { - for (int i=0; i 10) { - abortDueToBuildNumErrors(); - } - } else { - oncotateRecord(mafRecord, writer); - } - } - - private void abortDueToBuildNumErrors() { - System.out.println("Too many records with wrong build #. Aborting..."); - System.exit(1); - } - - private void outputBuildNumErrorMessage(String ncbiBuild) { - System.out.println("Record uses NCBI Build: " + ncbiBuild); - System.out.println("--> Oncotator only works with Build 37/hg19."); - } - - private void oncotateRecord(MafRecord mafRecord, FileWriter writer) throws IOException, DaoException { - String chr = mafRecord.getChr(); - long start = mafRecord.getStartPosition(); - long end = mafRecord.getEndPosition(); - String refAllele = mafRecord.getReferenceAllele(); - String tumorAllele = determineTumorAllele(mafRecord, refAllele); - if (tumorAllele != null) { - String coords = createCoordinates(chr, start, end, refAllele, tumorAllele); - System.out.println(coords); - if (genomicCountMap.containsKey(coords)) { - Integer count = genomicCountMap.get(coords); - genomicCountMap.put(coords, count+1); - } else { - genomicCountMap.put(coords, 1); - } - OncotatorRecord oncotatorRecord = - oncotatorService.getOncotatorRecord(chr, start, end, refAllele,tumorAllele); - writeOncotatorResults(writer, oncotatorRecord); - } else { - writeEmptyDataFields(writer); - } - } - - private String determineTumorAllele(MafRecord mafRecord, String refAllele) { - String tumorAllel1 = mafRecord.getTumorSeqAllele1(); - String tumorAllel2 = mafRecord.getTumorSeqAllele2(); - String tumorAllele = null; - if (!refAllele.equals(tumorAllel1)) { - tumorAllele = tumorAllel1; - } else if(!refAllele.equalsIgnoreCase(tumorAllel2)) { - tumorAllele = tumorAllel2; - } - return tumorAllele; - } - - private void writeOncotatorResults(Writer writer, OncotatorRecord oncotatorRecord) throws IOException { - String proteinChange = oncotatorRecord.getProteinChange(); - String cosmicOverlapping = oncotatorRecord.getCosmicOverlappingMutations(); - String dbSnpRs = oncotatorRecord.getDbSnpRs(); - String variantClassification = oncotatorRecord.getVariantClassification(); - String geneSymbol = oncotatorRecord.getGene(); - writer.write(TAB + outputField(variantClassification)); - writer.write(TAB + outputField(proteinChange)); - writer.write(TAB + outputField(cosmicOverlapping)); - writer.write(TAB + outputField(dbSnpRs)); - writer.write(TAB + outputField(geneSymbol)); - } - - private String outputField(String field) { - if (field == null) { - return ""; - } else { - return field; - } - } - - private String createCoordinates(String chr, long start, long end, - String refAllele, String tumorAllele) { - return chr + "_" + start + "_" + end + "_" + refAllele - + "_" + tumorAllele; - } - - /** - * Adjusts the data line for consistency. - * - * If the data is already oncotated removes last ONCO_HEADERS_COUNT columns - * to enable re-oncotation. Otherwise adjusts the data line to have columns - * exactly the same as the number of column headers to prevent incorrect - * oncotating. - * - * @param dataLine line to be adjusted - * @param util MAF util containing header information - * @return adjusted data line - */ - private String adjustDataLine(String dataLine, MafUtil util) - { - //String line = dataLine.trim(); - String line = new String(dataLine); - String[] parts = line.split(TAB, -1); - - // diff should be zero if (# of headers == # of data cols) - int diff = util.getHeaderCount() - parts.length; - - // check if already oncotated - boolean oncotated = (util.getOncoVariantClassificationIndex() != -1); - - // file already oncotated - if (oncotated) - { - line = new String(); - - // remove last ONCO_HEADERS_COUNT data columns - // (to enable overwrite instead of appending new cols to the end) - for (int i = 0; i < parts.length - ONCO_HEADERS_COUNT; i++) - { - line += parts[i]; - - if (i != parts.length - ONCO_HEADERS_COUNT - 1) - { - line += TAB; - } - - } - } - // not oncotated, but header and data mismatch - else if (diff > 0) - { - // append appropriate number of tabs - for (int i = 0; i < diff; i++) - { - line += TAB; - } - } - - return line; - } - - public static void main(String[] args) { - if (args.length < 2) { - System.out.println("command line usage: oncotateMaf.pl "); - System.exit(1); - } - Date start = new Date(); - try { - OncotateTool tool = new OncotateTool(new File(args[0]), new File(args[1])); - } catch (Exception e) { - System.out.println("Error occurred: " + e.getMessage()); - e.printStackTrace(); - } finally { - Date end = new Date(); - double timeElapsed = (end.getTime() - start.getTime()) / 1000.0; - System.out.println("Total time: " + timeElapsed + " seconds."); - } - } -} \ No newline at end of file diff --git a/portal/src/org/mskcc/portal/oncotator/OncotatorParser.java b/portal/src/org/mskcc/portal/oncotator/OncotatorParser.java deleted file mode 100644 index d5f93e7c4b6..00000000000 --- a/portal/src/org/mskcc/portal/oncotator/OncotatorParser.java +++ /dev/null @@ -1,75 +0,0 @@ -package org.mskcc.portal.oncotator; - -import com.fasterxml.jackson.databind.JsonNode; -import com.fasterxml.jackson.databind.ObjectMapper; - -import java.io.IOException; - -/** - * Parses JSON Retrieved from Oncotator. - */ -public class OncotatorParser -{ - - /** - * Parses the JSON returned by the oncotator web service, and returns - * the information as a new OncotateRecord instance. - * - * @param key chr#_start_end_allele1_allele2 - * @param json JSON object returned by the web service - * @return new OncotatorRecord, or null if JSON has an error - * @throws IOException - */ - public static OncotatorRecord parseJSON (String key, String json) throws IOException - { - ObjectMapper m = new ObjectMapper(); - JsonNode rootNode = m.readValue(json, JsonNode.class); - - OncotatorRecord oncotator = new OncotatorRecord(key); - - // check if JSON has an ERROR - - JsonNode errorNode = rootNode.path("ERROR"); - if (!errorNode.isMissingNode()) - { - System.out.println("JSON parse error for " + key + ": " + errorNode.getTextValue()); - return null; - } - - // proceed in case of no JSON error - - JsonNode genomeChange = rootNode.path("genome_change"); - if (!genomeChange.isMissingNode()) { - oncotator.setGenomeChange(genomeChange.getTextValue()); - } - - JsonNode cosmic = rootNode.path("Cosmic_overlapping_mutations"); - if (!cosmic.isMissingNode()) { - oncotator.setCosmicOverlappingMutations(cosmic.getTextValue()); - } - - JsonNode dbSnpRs = rootNode.path("dbSNP_RS"); - if (!dbSnpRs.isMissingNode()) { - oncotator.setDbSnpRs(dbSnpRs.getTextValue()); - } - - JsonNode bestTranscriptIndexNode = rootNode.path("best_canonical_transcript"); - - if (!bestTranscriptIndexNode.isMissingNode()) { - int transcriptIndex = bestTranscriptIndexNode.getIntValue(); - JsonNode transcriptsNode = rootNode.path("transcripts"); - JsonNode bestTranscriptNode = transcriptsNode.get(transcriptIndex); - - String variantClassification = bestTranscriptNode.path("variant_classification").getTextValue(); - String proteinChange = bestTranscriptNode.path("protein_change").getTextValue(); - String geneSymbol = bestTranscriptNode.path("gene").getTextValue(); - int exonAffected = bestTranscriptNode.path("exon_affected").getIntValue(); - oncotator.setVariantClassification(variantClassification); - oncotator.setProteinChange(proteinChange); - oncotator.setGene(geneSymbol); - oncotator.setExonAffected(exonAffected); - } - - return oncotator; - } -} diff --git a/portal/src/org/mskcc/portal/oncotator/OncotatorRecord.java b/portal/src/org/mskcc/portal/oncotator/OncotatorRecord.java deleted file mode 100644 index 05e81852cd0..00000000000 --- a/portal/src/org/mskcc/portal/oncotator/OncotatorRecord.java +++ /dev/null @@ -1,79 +0,0 @@ -package org.mskcc.portal.oncotator; - -/** - * Encapsulate a Single Record from Oncotator. - */ -public class OncotatorRecord { - private String key; - private String gene; - private String genomeChange; - private String proteinChange; - private String variantClassification; - private int exonAffected; - private String cosmicOverlappingMutations; - private String dbSnpRs; - - public OncotatorRecord (String key) { - this.key = key; - } - - public String getKey() { - return key; - } - - public String getProteinChange() { - return proteinChange; - } - - public void setProteinChange(String proteinChange) { - this.proteinChange = proteinChange; - } - - public String getVariantClassification() { - return variantClassification; - } - - public void setVariantClassification(String variantClassification) { - this.variantClassification = variantClassification; - } - - public String getGene() { - return gene; - } - - public void setGene(String gene) { - this.gene = gene; - } - - public String getGenomeChange() { - return genomeChange; - } - - public void setGenomeChange(String genomeChange) { - this.genomeChange = genomeChange; - } - - public int getExonAffected() { - return exonAffected; - } - - public void setExonAffected(int exonAffected) { - this.exonAffected = exonAffected; - } - - public String getCosmicOverlappingMutations() { - return cosmicOverlappingMutations; - } - - public void setCosmicOverlappingMutations(String cosmicOverlappingMutations) { - this.cosmicOverlappingMutations = cosmicOverlappingMutations; - } - - public String getDbSnpRs() { - return dbSnpRs; - } - - public void setDbSnpRs(String dbSnpRs) { - this.dbSnpRs = dbSnpRs; - } -} diff --git a/portal/src/org/mskcc/portal/oncotator/OncotatorService.java b/portal/src/org/mskcc/portal/oncotator/OncotatorService.java deleted file mode 100644 index f20246d8517..00000000000 --- a/portal/src/org/mskcc/portal/oncotator/OncotatorService.java +++ /dev/null @@ -1,94 +0,0 @@ -package org.mskcc.portal.oncotator; - -import org.mskcc.cgds.dao.DaoException; -import org.mskcc.cgds.dao.DaoOncotatorCache; -import org.mskcc.portal.util.WebFileConnect; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.io.IOException; -import java.io.BufferedReader; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.net.URL; - -/** - * Connects to Oncotator and Retrieves Details on a Single Mutation. - */ -public class OncotatorService { - private static OncotatorService oncotatorService; - private final static String ONCOTATOR_BASE_URL = "http://www.broadinstitute.org/oncotator/mutation/"; - private static final Logger logger = Logger.getLogger(OncotatorService.class); - private DaoOncotatorCache cache; - private final static long SLEEP_PERIOD = 0; // in ms - - private OncotatorService () { - cache = DaoOncotatorCache.getInstance(); - } - - public static OncotatorService getInstance() { - if (oncotatorService == null) { - oncotatorService = new OncotatorService(); - } - return oncotatorService; - } - - public OncotatorRecord getOncotatorRecord(String chr, long start, long end, String referenceAllele, - String observedAllele) throws IOException, DaoException { - String key = createKey(chr, start, end, referenceAllele, observedAllele); - - BufferedReader in = null; - InputStream inputStream = null; - try - { - OncotatorRecord record = cache.get(key); - - // if record is null, then it is not cached yet - if (record == null) - { - try { - // Must go to sleep; otherwise, we trigger the Broad's Limit. - Thread.sleep(SLEEP_PERIOD); - } catch (InterruptedException e) { - e.printStackTrace(); - } - - URL url = new URL(ONCOTATOR_BASE_URL + key); - inputStream = url.openStream(); - in = new BufferedReader(new InputStreamReader(inputStream)); - String content = WebFileConnect.readFile(in); - record = OncotatorParser.parseJSON(key, content); - - // if record is null, then there is an error with JSON parsing - if (record != null) - { - cache.put(record); - } - else - { - record = new OncotatorRecord(key); - } - - return record; - } - else - { - return record; - } - } catch (IOException e) { - System.out.println("Got IO Error: " + e.getMessage()); - return new OncotatorRecord(key); - } finally { - // Must close input stream! Otherwise, we maintain too many open connections - // to the Broad. - if (inputStream != null) { - inputStream.close(); - } - } - } - - public static String createKey(String chr, long start, long end, String referenceAllele, - String observedAllele) { - return chr + "_" + start + "_" + end + "_" + referenceAllele + "_" + observedAllele; - } -} \ No newline at end of file diff --git a/portal/src/org/mskcc/portal/test/oncotator/TestOncotatorParser.java b/portal/src/org/mskcc/portal/test/oncotator/TestOncotatorParser.java deleted file mode 100644 index 08aa31d933e..00000000000 --- a/portal/src/org/mskcc/portal/test/oncotator/TestOncotatorParser.java +++ /dev/null @@ -1,27 +0,0 @@ -package org.mskcc.portal.test.oncotator; - -import junit.framework.TestCase; -import org.mskcc.portal.oncotator.OncotatorParser; -import org.mskcc.portal.oncotator.OncotatorRecord; -import org.mskcc.portal.util.WebFileConnect; - -import java.io.BufferedReader; -import java.io.FileReader; - -/** - * Unit test for OncotatorParser. - */ -public class TestOncotatorParser extends TestCase { - - public void testParser() throws Exception { - FileReader reader = new FileReader("test_data/oncotator0.json"); - BufferedReader bufReader = new BufferedReader(reader); - String content = WebFileConnect.readFile(bufReader); - OncotatorRecord oncotator = OncotatorParser.parseJSON("key", content); - assertEquals("PTEN", oncotator.getGene()); - assertEquals("g.chr10:89653820G>T", oncotator.getGenomeChange()); - assertEquals("p.E40*", oncotator.getProteinChange()); - assertEquals("Nonsense_Mutation", oncotator.getVariantClassification()); - assertEquals("rs121434568", oncotator.getDbSnpRs()); - } -} diff --git a/portal/src/org/mskcc/portal/test/util/TestMafUtil.java b/portal/src/org/mskcc/portal/test/util/TestMafUtil.java deleted file mode 100644 index 9ca742d5f77..00000000000 --- a/portal/src/org/mskcc/portal/test/util/TestMafUtil.java +++ /dev/null @@ -1,100 +0,0 @@ -package org.mskcc.portal.test.util; - -import junit.framework.TestCase; -import org.mskcc.portal.model.MafRecord; -import org.mskcc.portal.util.MafUtil; - -/** - * JUnit Tests for MAF Util. - * -*/ -public class TestMafUtil extends TestCase { - - public void testMafUtil1() { - String headerLine = "BAM_file\tCenter\tChromosome\tEnd_position\tEntrez_Gene_Id\tHugo_Symbol" + - "\tMatch_Norm_Seq_Allele1\tMatch_Norm_Seq_Allele2\tMatch_Norm_Validation_Allele1" + - "\tMatch_Norm_Validation_Allele2\tMatched_Norm_Sample_Barcode\tMutation_Status" + - "\tNCBI_Build\tReference_Allele\tScore\tSequence_Source\tSequencer\tSequencing_Phase" + - "\tStart_position\tStrand\tTumor_Sample_Barcode\tTumor_Seq_Allele1\tTumor_Seq_Allele2" + - "\tTumor_Validation_Allele1\tTumor_Validation_Allele2\tValidation_Method" + - "\tValidation_Status\tVariant_Classification\tVariant_Type\tVerification_Status" + - "\tdataset\tdbSNP_RS\tdbSNP_Val_Status\tpatient\ttype\tclassification" + - "\tstart\tend\tgene\tchr\tref_allele\ttum_allele1\ttum_allele2\tnewbase" + - "\tcontext_orig\tcontext65\tgene_name"; - MafUtil mafUtil = new MafUtil(headerLine); - assertEquals(1, mafUtil.getCenterIndex()); - assertEquals(2, mafUtil.getChrIndex()); - assertEquals(3, mafUtil.getEndPositionIndex()); - assertEquals(4, mafUtil.getEntrezGeneIdIndex()); - assertEquals(5, mafUtil.getHugoGeneSymbolIndex()); - assertEquals(11, mafUtil.getMutationStatusIndex()); - assertEquals(12, mafUtil.getNcbiIndex()); - assertEquals(13, mafUtil.getReferenceAlleleIndex()); - assertEquals(18, mafUtil.getStartPositionIndex()); - assertEquals(19, mafUtil.getStrandIndex()); - assertEquals(20, mafUtil.getTumorSampleIndex()); - assertEquals(27, mafUtil.getVariantClassificationIndex()); - assertEquals(28, mafUtil.getVariantTypeIndex()); - } - - public void testMafUtil2() { - String headerLine = "Hugo_Symbol\tEntrez_Gene_Id\tCenter\tNCBI_Build\tChromosome\tStart_position" + - "\tEnd_position\tStrand\tVariant_Classification\tVariant_Type\tReference_Allele" + - "\tTumor_Seq_Allele1\tTumor_Seq_Allele2\tdbSNP_RS\tdbSNP_Val_Status\tTumor_Sample_Barcode" + - "\tMatched_Norm_Sample_Barcode\tMatch_Norm_Seq_Allele1\tMatch_Norm_Seq_Allele2" + - "\tTumor_Validation_Allele1\tTumor_Validation_Allele2\tMatch_Norm_Validation_Allele1" + - "\tMatch_Norm_Validation_Allele2\tVerification_Status\tValidation_Status\tMutation_Status" + - "\tSequencing_Phase\tSequence_Source\tValidation_Method\tScore\tBAM_file\tSequencer" + - "\tchromosome_name\tstart\tstop\treference\tvariant\ttype\tgene_name\ttranscript_name" + - "\ttranscript_species\ttranscript_source\ttranscript_version\tstrand\ttranscript_status" + - "\ttrv_type\tc_position\tamino_acid_change\tucsc_cons\tdomain\tall_domains" + - "\tdeletion_substructures\ttranscript_error comment\tMA:variant\tMA:GE.rank\tMA:CNA" + - "\tMA:OV.variant.samples\tMA:OV.gene.samples\tMA:mapping.issue\tMA:FImpact" + - "\tMA:FI.score\tMA:Func.region\tMA:bindsite.protein\tMA:bindsite.DNA/RNA" + - "\tMA:bindsite.sm.mol\tMA:CancerGenes\tMA:TS\tMA:OG\tMA:COSMIC.mutations" + - "\tMA:COSMIC.cancers\tMA:Uniprot.regions\tMA:TS.interacts\tMA:OG.interacts" + - "\tMA:Pfam.domain\tMA:link.var\tMA:link.MSA\tMA:link.PDB"; - MafUtil mafUtil = new MafUtil(headerLine); - assertEquals(0, mafUtil.getHugoGeneSymbolIndex()); - assertEquals(1, mafUtil.getEntrezGeneIdIndex()); - assertEquals(2, mafUtil.getCenterIndex()); - assertEquals(3, mafUtil.getNcbiIndex()); - assertEquals(4, mafUtil.getChrIndex()); - assertEquals(5, mafUtil.getStartPositionIndex()); - assertEquals(6, mafUtil.getEndPositionIndex()); - assertEquals(7, mafUtil.getStrandIndex()); - assertEquals(8, mafUtil.getVariantClassificationIndex()); - assertEquals(9, mafUtil.getVariantTypeIndex()); - assertEquals(10, mafUtil.getReferenceAlleleIndex()); - assertEquals(15, mafUtil.getTumorSampleIndex()); - assertEquals(25, mafUtil.getMutationStatusIndex()); - - String dataLine = "AGL\t178\tgenome.wustl.edu\t36\t1\t100122272\t100122272\t+\tMissense_Mutation\tSNP" + - "\tG\tG\tA\tnovel\tUnknown\tTCGA-13-1405-01A-01W-0494-09\tTCGA-13-1405-10A-01W-0495-09" + - "\tG\tG\tG\tA\tG\tG\tUnknown\tValid\tSomatic\t4\tCapture\t454_PCR_WGA\t1\tdbGAP\tIllumina GAIIx" + - "\t1\t100122272\t100122272\tG\tA\tSNP\tAGL\tNM_000028\thuman\tgenbank\t54_36p\t1\tvalidated" + - "\tmissense\tc.2317\tp.E773K\t1" + - "\tNULL\tsuperfamily_(Trans)glycosidases,HMMPfam_GDE_C,superfamily_Six-hairpin glycosidases" + - "\t-\tno_errors\t1,100122272,G,A\t0.5081\t0\t1\t1\t\tlow\t1.24\t\t\t\t\tEntrez Query :: Stability" + - "\t\t\t\t\t\t\t\t\thttp://mutationassessor.org?cm=var&var=1,100122272,G,A&fts=all" + - "\thttp://mutationassessor.org/?cm=msa&ty=f&p=GDE_HUMAN&rb=601&re=800&var=E773K\t"; - MafRecord record = mafUtil.parseRecord(dataLine); - assertEquals("AGL", record.getHugoGeneSymbol()); - assertEquals(178L, record.getEntrezGeneId()); - assertEquals("genome.wustl.edu", record.getCenter()); - assertEquals("36", record.getNcbiBuild()); - assertEquals("1", record.getChr()); - assertEquals(100122272, record.getStartPosition()); - assertEquals(100122272, record.getEndPosition()); - assertEquals("+", record.getStrand()); - assertEquals("Missense_Mutation", record.getVariantClassification()); - assertEquals("SNP", record.getVariantType()); - assertEquals("G", record.getReferenceAllele()); - assertEquals("G", record.getTumorSeqAllele1()); - assertEquals("A", record.getTumorSeqAllele2()); - assertEquals("novel", record.getDbSNP_RS()); - assertEquals("TCGA-13-1405-01A-01W-0494-09", record.getTumorSampleID()); - assertEquals("Valid", record.getValidationStatus()); - assertEquals("Somatic", record.getMutationStatus()); - } -} diff --git a/scripts/pom.xml b/scripts/pom.xml deleted file mode 100644 index aad01899e2c..00000000000 --- a/scripts/pom.xml +++ /dev/null @@ -1,111 +0,0 @@ - - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - scripts - Portal Scripts - Scripts Package for Portal - - - - org.mskcc.cbio - core - - - javax.servlet - javax.servlet-api - - - - - - - - org.apache.maven.plugins - maven-resources-plugin - - - copy-parent-resources - process-sources - - copy-resources - - - ${project.build.directory}/classes - - - ${PORTAL_HOME}/src/main/resources - true - - **/*.properties - - - **/portal.properties.* - **/logback.xml.* - **/maven.properties.* - **/*.EXAMPLE - - - - ${PORTAL_HOME}/portal/src/main/webapp/WEB-INF - true - - logback.xml - - - - - - - - - - org.apache.maven.plugins - maven-shade-plugin - - - package - - shade - - - false - - - org.bouncycastle:bcprov-jdk15 - - - - - META-INF/spring.handlers - - - META-INF/spring.schemas - - - - - *:* - - META-INF/*.SF - META-INF/*.DSA - META-INF/*.RSA - - - - - - - - - - - - diff --git a/security/permission-evaluator/pom.xml b/security/permission-evaluator/pom.xml deleted file mode 100644 index c36188ba8a3..00000000000 --- a/security/permission-evaluator/pom.xml +++ /dev/null @@ -1,24 +0,0 @@ - - - - security - org.mskcc.cbio - 0-unknown-version-SNAPSHOT - - 4.0.0 - - permission-evaluator - - - org.springframework.security - spring-security-core - - - org.mskcc.cbio - persistence-mybatis - - - - \ No newline at end of file diff --git a/security/pom.xml b/security/pom.xml deleted file mode 100644 index 5a3073b65e6..00000000000 --- a/security/pom.xml +++ /dev/null @@ -1,55 +0,0 @@ - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - security - pom - - security-spring - permission-evaluator - - - - - - com.fasterxml.jackson.core - jackson-core - - - com.fasterxml.jackson.core - jackson-databind - - - io.jsonwebtoken - jjwt-api - - - io.jsonwebtoken - jjwt-impl - - - io.jsonwebtoken - jjwt-jackson - - - com.auth0 - jwks-rsa - - - org.mockito - mockito-core - - - com.google.guava - guava - - - - diff --git a/security/security-spring/pom.xml b/security/security-spring/pom.xml deleted file mode 100644 index 07f909d4d44..00000000000 --- a/security/security-spring/pom.xml +++ /dev/null @@ -1,123 +0,0 @@ - - - - security - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - security-spring - - - - org.mskcc.cbio - service - - - org.mskcc.cbio - utils - - - org.springframework - spring-test - - - - org.springframework.security - spring-security-acl - - - org.springframework.security - spring-security-jwt - - - org.springframework.security.oauth - spring-security-oauth2 - - - org.springframework.security - spring-security-config - - - org.springframework.security - spring-security-core - - - org.springframework.security - spring-security-ldap - - - org.springframework.security - spring-security-openid - - - org.springframework.security.extensions - spring-security-saml2-core - - - org.springframework.security - spring-security-taglibs - - - org.springframework.security - spring-security-web - - - - org.springframework.social - spring-social-config - - - org.springframework.social - spring-social-core - - - org.springframework.social - spring-social-security - - - org.springframework.social - spring-social-web - - - - com.github.spring-social - spring-social-google - - - - com.google.inject - guice - - - - javax.servlet - javax.servlet-api - - - - com.github.cbioportal - spring-social-live - - - - com.fasterxml.jackson.core - jackson-core - - - com.fasterxml.jackson.core - jackson-databind - - - com.fasterxml.jackson.core - jackson-annotations - - - junit - junit - - - diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/PortalSavedRequestAwareAuthenticationSuccessHandler.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/PortalSavedRequestAwareAuthenticationSuccessHandler.java deleted file mode 100644 index 374623ffb93..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/PortalSavedRequestAwareAuthenticationSuccessHandler.java +++ /dev/null @@ -1,149 +0,0 @@ -/* - * Copyright (c) 2017 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * Copyright 2002-2016 the original author or authors. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring; - -import java.io.IOException; -import java.net.URI; -import java.net.URISyntaxException; - -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import org.springframework.security.core.Authentication; -import org.springframework.security.web.authentication.SimpleUrlAuthenticationSuccessHandler; -import org.springframework.security.web.savedrequest.SavedRequest; -import org.springframework.security.web.savedrequest.RequestCache; -import org.springframework.security.web.savedrequest.HttpSessionRequestCache; -import org.springframework.util.StringUtils; -import org.springframework.util.Assert; - -/** - * A reimplementation of SavedRequestAwareAuthenticationSuccessHandler that checks for - * targetUrlParameter on the SavedRequest rather than on the current request. - * - * @author Manda Wilson - * @see SavedRequestAwareAuthenticationSuccessHandler - */ -class PortalSavedRequestAwareAuthenticationSuccessHandler extends SimpleUrlAuthenticationSuccessHandler { - - protected static final Logger log = LoggerFactory.getLogger(PortalSavedRequestAwareAuthenticationSuccessHandler.class); - - private RequestCache requestCache = new HttpSessionRequestCache(); - - @Override - public void onAuthenticationSuccess(HttpServletRequest request, - HttpServletResponse response, Authentication authentication) - throws ServletException, IOException { - SavedRequest savedRequest = requestCache.getRequest(request, response); - - if (savedRequest == null) { - super.onAuthenticationSuccess(request, response, authentication); - - return; - } - - if (isAlwaysUseDefaultTargetUrl()) { - requestCache.removeRequest(request, response); - super.onAuthenticationSuccess(request, response, authentication); - - return; - } - - String targetUrlParameter = getTargetUrlParameter(); - String targetUrl = null; - String[] targetUrlParameterValues = savedRequest.getParameterValues(targetUrlParameter); - - if (targetUrlParameter != null - && targetUrlParameterValues != null - && targetUrlParameterValues.length > 0 - && StringUtils.hasText(targetUrlParameterValues[0])) { - requestCache.removeRequest(request, response); - // force this to be relative - targetUrl = getRelativeURI(request, savedRequest.getParameterValues(targetUrlParameter)[0]); - Assert.notNull(targetUrl, "'" + savedRequest.getParameterValues(targetUrlParameter)[0] + "' could not be turned into a valid relative URI"); - Assert.isTrue(StringUtils.hasText(targetUrl), "'" + savedRequest.getParameterValues(targetUrlParameter)[0] + "' could not be turned into a valid relative URI"); - } else { - clearAuthenticationAttributes(request); - // Use the DefaultSavedRequest URL - targetUrl = savedRequest.getRedirectUrl(); - } - - logger.debug("Redirecting to Url: " + targetUrl); - getRedirectStrategy().sendRedirect(request, response, targetUrl); - } - - public void setRequestCache(RequestCache requestCache) { - this.requestCache = requestCache; - } - - private String getRelativeURI(HttpServletRequest request, String targetURI) { - String relativeURI = null; - try { - URI originalURI = new URI(targetURI); - logger.debug("getRelativeURI(): request.getServletContext() = '" + request.getServletContext() + "'"); - logger.debug("getRelativeURI(): testing '" + new URI(request.getContextPath()) + "'"); - // URI(String scheme, String authority, String path, String query, String fragment) - // use relativize so we do not include context path e.g. /cbioportal/ - // use resolve to make sure we have a "/" at the front - relativeURI = new URI("/").resolve(new URI(request.getContextPath()).relativize(new URI(null, - null, - originalURI.getRawPath(), - originalURI.getRawQuery(), - originalURI.getRawFragment()))).toString(); - logger.debug("getRelativeURI(): changing '" + targetURI + "' to '" + relativeURI + "'"); - } catch (URISyntaxException e) { - return null; - } - return relativeURI; - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/PortalUserDetails.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/PortalUserDetails.java deleted file mode 100644 index c84e4b44bb7..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/PortalUserDetails.java +++ /dev/null @@ -1,70 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication; - -import org.springframework.security.core.GrantedAuthority; -import org.springframework.security.core.userdetails.User; - -import java.util.Collection; - -/** - * A class which extends User and provides - * methods to set and get properties obtained - * via an authentication protocol. - * - * @author Benjamin Gross - */ -public class PortalUserDetails extends User { - - private String email; - private String userName; - - /** - * Constructor. - * - * @param username String - * @param authorities Collection - * - * Username is what is presented to the authentication provider. - * Authorities is what should be granted to the caller. - */ - public PortalUserDetails(String username, Collection authorities) { - super(username, "unused", authorities); - } - - // accessors - public String getEmail() { return email; } - public void setEmail(String email) {this.email = email; } - public String getUserName() { return userName; } - public void setUserName(String userName) { this.userName = userName; } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/googleplus/GoogleplusConnectionFactory.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/googleplus/GoogleplusConnectionFactory.java deleted file mode 100644 index f40256881bb..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/googleplus/GoogleplusConnectionFactory.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.googleplus; - -import org.springframework.social.connect.support.OAuth2ConnectionFactory; -import org.springframework.social.google.api.Google; -import org.springframework.social.google.connect.GoogleAdapter; -import org.springframework.social.google.connect.GoogleServiceProvider; -import org.springframework.social.oauth2.AccessGrant; -import org.springframework.social.google.api.oauth2.OAuth2Operations; - -/** - * @author criscuof - * - */ -public class GoogleplusConnectionFactory extends OAuth2ConnectionFactory { - - public GoogleplusConnectionFactory(String clientId, String clientSecret) { - super("google", new GoogleServiceProvider(clientId, clientSecret), - new GoogleAdapter()); - } - - /** - * modification of original factory class to support using the user's email address as his/her id - * original method utilized the google id, a numeric string - */ - @Override - protected String extractProviderUserId(AccessGrant accessGrant) { - Google api = ((GoogleServiceProvider)getServiceProvider()).getApi(accessGrant.getAccessToken()); - OAuth2Operations op = api.oauth2Operations(); - return op.getUserinfo().getEmail(); - } - -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/googleplus/GoogleplusUserDetailsService.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/googleplus/GoogleplusUserDetailsService.java deleted file mode 100644 index 61de18c25b1..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/googleplus/GoogleplusUserDetailsService.java +++ /dev/null @@ -1,94 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.googleplus; - -import com.google.common.base.Preconditions; -import com.google.common.base.Strings; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.dao.DataAccessException; -import org.springframework.security.core.userdetails.UserDetails; -import org.springframework.security.core.userdetails.UserDetailsService; -import org.springframework.security.core.userdetails.UsernameNotFoundException; -import org.springframework.social.security.SocialUser; -import org.springframework.social.security.SocialUserDetailsService; - - - - - - -public class GoogleplusUserDetailsService implements SocialUserDetailsService { - - private static final Logger LOGGER = LoggerFactory.getLogger(GoogleplusUserDetailsService.class); - - private UserDetailsService userDetailsService; - - public GoogleplusUserDetailsService(UserDetailsService userDetailsService) { - this.userDetailsService = userDetailsService; - - } - - /** - * Loads the username by using the account ID of the user. - * @param userId The account ID of the requested user. - * @return The information of the requested user. - * @throws UsernameNotFoundException Thrown if no user is found. - * @throws DataAccessException - */ - - - @Override - public org.springframework.social.security.SocialUserDetails loadUserByUserId(String userId) throws UsernameNotFoundException, DataAccessException { - Preconditions.checkArgument(!Strings.isNullOrEmpty(userId), "A userid is required"); - LOGGER.debug("Loading user by user id: {}", userId); - - UserDetails ud = userDetailsService.loadUserByUsername(userId); - LOGGER.debug("Found user details: " +ud.getUsername()); - /** - * Map Spring Security UserDetails implementation to a Spring Social SocialUser instance - */ - return new SocialUser(ud.getUsername(), - ud.getPassword(), - ud.isEnabled(), - ud.isAccountNonExpired(), - ud.isCredentialsNonExpired(), - ud.isAccountNonLocked(), - ud.getAuthorities()); - - - } - - -} - diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/keycloak/SAMLUserDetailsServiceImpl.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/keycloak/SAMLUserDetailsServiceImpl.java deleted file mode 100644 index ea0ad3fd004..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/keycloak/SAMLUserDetailsServiceImpl.java +++ /dev/null @@ -1,152 +0,0 @@ -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.keycloak; - -import java.util.ArrayList; -import java.util.List; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; - -import org.cbioportal.security.spring.authentication.PortalUserDetails; - -import org.opensaml.saml2.core.Attribute; - -import org.opensaml.xml.XMLObject; -import org.opensaml.xml.schema.XSString; -import org.opensaml.xml.schema.impl.XSAnyImpl; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.security.core.authority.AuthorityUtils; -import org.springframework.security.saml.SAMLCredential; -import org.springframework.security.saml.userdetails.SAMLUserDetailsService; -import org.springframework.stereotype.Service; - -/** - * Implements spring security SAMLUserDetailsService interface: - * Instantiates PortalUserDetails object from SAML assertion received from - * keycloak identity provide. Creates Spring Security GrantedAuthority list - * based on cancer study roles included in the assertion during authentication - * - * @author Kelsey Zhu - */ - -@Service -public class SAMLUserDetailsServiceImpl implements SAMLUserDetailsService -{ - private static final Log log = LogFactory.getLog(SAMLUserDetailsServiceImpl.class); - - @Value("${saml.idp.metadata.attribute.email:}") - private String SAML_IDP_METADATA_EMAIL_ATTR_NAME; - - @Value("${saml.idp.metadata.attribute.userName:username}") - private String SAML_IDP_METADATA_USERNAME_ATTR_NAME; - - @Value("${saml.idp.metadata.attribute.role:}") - private String SAML_IDP_METADATA_ROLE_ATTR_NAME; - - @Value("${app.name:}") - private String APP_NAME; - - - /** - * Default no_arg Constructor. - */ - public SAMLUserDetailsServiceImpl() { - } - - /** - * - * @param attributeValue - * @return String type attribute value - */ - private String getAttributeValue(XMLObject attributeValue) - { - return attributeValue == null ? - null : - attributeValue instanceof XSString ? - ((XSString) attributeValue).getValue() : - attributeValue instanceof XSAnyImpl ? - ((XSAnyImpl) attributeValue).getTextContent() : - attributeValue.toString(); - } - - /** - * Implementation of {@code SAMLUserDetailsService}. - * Instantiate PortalUserDetails object from - * SAML assertion received from keycloak Identity Provider - */ - @Override - public Object loadUserBySAML(SAMLCredential credential) - { - PortalUserDetails userDetailsObj = null; - String email = null; - String userName = null; - List userRoles = new ArrayList(); - - // get email, userName and roles: iterate over attributes searching for "email", "userName" and "roles": - for (Attribute cAttribute : credential.getAttributes()) { - String attrName = cAttribute.getName(); - log.debug("loadUserBySAML(), parsing attribute -" + attrName); - - - if (email == null && attrName.equals(SAML_IDP_METADATA_EMAIL_ATTR_NAME)) { - email = credential.getAttributeAsString(attrName); - log.debug(email); - } - - if (userName == null && attrName.equals(SAML_IDP_METADATA_USERNAME_ATTR_NAME)) { - userName = credential.getAttributeAsString(attrName); - log.debug(userName); - } - if (attrName.equals(SAML_IDP_METADATA_ROLE_ATTR_NAME)) { - List attributeValues = cAttribute.getAttributeValues(); - if (!attributeValues.isEmpty()) { - for (XMLObject attributeValueXml : attributeValues) { - userRoles.add(getAttributeValue(attributeValueXml)); - } - } - } - } - - try { - - if (email == null) { - - String errorMsg = "loadUserBySAML(), can not instantiate PortalUserDetails from SAML assertion." - + " Expected 'email' attribute was not found or has no values. "; - log.error(errorMsg); - throw new Exception(errorMsg); - } - - log.debug("loadUserBySAML(), IDP successfully authenticated user, username: " + userName +", email: " + email); - - //add granted authorities: - if (userRoles.size() > 0) userDetailsObj = new PortalUserDetails(email, - AuthorityUtils.createAuthorityList(userRoles.toArray(new String[userRoles.size()]))); - else - userDetailsObj = new PortalUserDetails(email, AuthorityUtils.createAuthorityList(new String[0])); - userDetailsObj.setEmail(email); - userDetailsObj.setUserName(userName); - return userDetailsObj; - } - catch (Exception e) { - throw new RuntimeException("Error occurs during authentication: " + e.getMessage()); - } - } -} - diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/live/LiveConnectionFactory.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/live/LiveConnectionFactory.java deleted file mode 100644 index 0b40d37d9ef..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/live/LiveConnectionFactory.java +++ /dev/null @@ -1,28 +0,0 @@ -package org.cbioportal.security.spring.authentication.live; - -import org.springframework.social.connect.UserProfile; -import org.springframework.social.connect.support.OAuth2ConnectionFactory; -import org.springframework.social.live.api.Live; -import org.springframework.social.live.connect.LiveAdapter; -import org.springframework.social.live.connect.LiveServiceProvider; -import org.springframework.social.oauth2.AccessGrant; - -public class LiveConnectionFactory extends OAuth2ConnectionFactory { - - public LiveConnectionFactory(String clientId, String clientSecret) { - super("live", new LiveServiceProvider(clientId, clientSecret), new LiveAdapter()); - } - - /* - * modification of original factory class to support using the user's email - * address as his/her id original method utilized the google id, a numeric - * string - */ - @Override - protected String extractProviderUserId(AccessGrant accessGrant) { - Live live = ((LiveServiceProvider) getServiceProvider()).getApi(accessGrant.getAccessToken()); - UserProfile userProfile = getApiAdapter().fetchUserProfile(live); - return userProfile.getEmail(); - } - -} \ No newline at end of file diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/openID/PortalUserDetailsService.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/openID/PortalUserDetailsService.java deleted file mode 100644 index bd668a0f005..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/openID/PortalUserDetailsService.java +++ /dev/null @@ -1,191 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.openID; - -// imports -import org.cbioportal.model.User; -import org.cbioportal.model.UserAuthorities; -import org.cbioportal.persistence.SecurityRepository; -import org.cbioportal.security.spring.authentication.PortalUserDetails; - -import org.springframework.beans.factory.annotation.Autowired; - -import org.springframework.security.openid.*; - -import org.springframework.security.core.userdetails.*; -import org.springframework.security.core.GrantedAuthority; -import org.springframework.security.core.authority.AuthorityUtils; - -import org.springframework.stereotype.Service; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.util.List; - -/** - * Custom UserDetailsService which authenticates - * OpenID user against backend cgds database. - * - * @author Benjamin Gross - */ -@Service -public class PortalUserDetailsService - implements UserDetailsService, AuthenticationUserDetailsService { - - // logger - private static final Logger log = LoggerFactory.getLogger(PortalUserDetailsService.class); - - @Autowired - private SecurityRepository securityRepository; - - /** - * Constructor. - * - */ - public PortalUserDetailsService() { - } - - - /** - * Implementation of {@code UserDetailsService}. - * We only need this to satisfy the {@code RememberMeServices} requirements. - */ - public UserDetails loadUserByUsername(String id) throws UsernameNotFoundException { - throw new UnsupportedOperationException(); - } - - /** - * Implementation of {@code AuthenticationUserDetailsService} - * which allows full access to the submitted {@code Authentication} object. - * Used by the OpenIDAuthenticationProvider. - */ - public UserDetails loadUserDetails(OpenIDAuthenticationToken token) throws UsernameNotFoundException { - - // what we return - PortalUserDetails toReturn = null; - - // get open id - String id = token.getIdentityUrl(); - id = id.toLowerCase(); - - // grab other open id attributes - String email = null; - String firstName = null; - String lastName = null; - String fullName = null; - - // myopenid does not return attributes in the token - if (id.indexOf("myopenid") != -1) { - email = id; - fullName = id; - } - else { - try { - List attributes = token.getAttributes(); - for (OpenIDAttribute attribute : attributes) { - if (attribute.getName().equals("email")) { - email = attribute.getValues().get(0); - email = email.toLowerCase(); - } - if (attribute.getName().equals("firstname")) { - firstName = attribute.getValues().get(0); - } - if (attribute.getName().equals("lastname")) { - lastName = attribute.getValues().get(0); - } - if (attribute.getName().equals("fullname")) { - fullName = attribute.getValues().get(0); - } - } - if (fullName == null) { - StringBuilder fullNameBldr = new StringBuilder(); - if (firstName != null) { - fullNameBldr.append(firstName); - } - if (lastName != null) { - fullNameBldr.append(" ").append(lastName); - } - fullName = fullNameBldr.toString(); - } - } - catch (NullPointerException ex) { - log.warn("Attribute exchange failed using OpenID "+token.getIdentityUrl()+" for everything"); - fullName = email = token.getIdentityUrl(); - } - } - - // check if this user exists in our backend db - try { - if (log.isDebugEnabled()) { - log.debug("loadUserDetails(), attempting to fetch portal user, email: " + email); - } - User user = securityRepository.getPortalUser(email); - if (user != null && user.isEnabled()) { - if (log.isDebugEnabled()) { - log.debug("loadUserDetails(), attempting to fetch portal user authorities, email: " + email); - } - UserAuthorities authorities = securityRepository.getPortalUserAuthorities(email); - if (authorities != null) { - List grantedAuthorities = - AuthorityUtils.createAuthorityList(authorities.getAuthorities().toArray(new String[authorities.getAuthorities().size()])); - toReturn = new PortalUserDetails(id, grantedAuthorities); - toReturn.setEmail(email); - toReturn.setUserName(fullName); - } - } - } - catch (Exception e) { - if (log.isDebugEnabled()) { - log.debug(e.getMessage()); - } - else { - e.printStackTrace(); - } - } - - // outta here - if (toReturn == null) { - if (log.isDebugEnabled()) { - log.debug("loadUserDetails(), user and/or user authorities is null, email: " + email); - } - throw new UsernameNotFoundException("Error: Unknown user or account disabled"); - } - else { - if (log.isDebugEnabled()) { - log.debug("loadUserDetails(), successfully authenticated user, email: " + email); - } - return toReturn; - } - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/BasicRestfulAuthenticationSuccessHandler.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/BasicRestfulAuthenticationSuccessHandler.java deleted file mode 100644 index fa191d2a3e1..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/BasicRestfulAuthenticationSuccessHandler.java +++ /dev/null @@ -1,62 +0,0 @@ -/* - * Copyright (c) 2016-2021 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.saml; - -import java.io.IOException; - -import javax.servlet.http.*; -import javax.servlet.ServletException; - -import org.springframework.security.web.*; -import org.springframework.security.core.Authentication; -import org.springframework.security.web.authentication.AuthenticationSuccessHandler; - -public class BasicRestfulAuthenticationSuccessHandler implements AuthenticationSuccessHandler { - private RedirectStrategy redirectStrategy = new DefaultRedirectStrategy(); - - @Override - public void onAuthenticationSuccess(HttpServletRequest request, - HttpServletResponse response, Authentication authentication) throws IOException, ServletException { - HttpSession session = request.getSession(); - session.setAttribute("user_id", request.getParameter("user_id")); - redirectStrategy.sendRedirect(request, response, "/restful_login.jsp"); - } - - public RedirectStrategy getRedirectStrategy() { - return redirectStrategy; - } - - public void setRedirectStrategy(RedirectStrategy redirectStrategy) { - this.redirectStrategy = redirectStrategy; - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/SAMLBootstrapRSA256.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/SAMLBootstrapRSA256.java deleted file mode 100644 index d3184e39949..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/SAMLBootstrapRSA256.java +++ /dev/null @@ -1,18 +0,0 @@ -package org.cbioportal.security.spring.authentication.saml; - -import org.opensaml.Configuration; -import org.opensaml.xml.security.BasicSecurityConfiguration; -import org.opensaml.xml.signature.SignatureConstants; -import org.springframework.beans.BeansException; -import org.springframework.beans.factory.config.ConfigurableListableBeanFactory; -import org.springframework.security.saml.SAMLBootstrap; - -public class SAMLBootstrapRSA256 extends SAMLBootstrap { - @Override - public void postProcessBeanFactory(ConfigurableListableBeanFactory beanFactory) throws BeansException { - super.postProcessBeanFactory(beanFactory); - BasicSecurityConfiguration config = (BasicSecurityConfiguration) Configuration.getGlobalSecurityConfiguration(); - config.registerSignatureAlgorithmURI("RSA", SignatureConstants.ALGO_ID_SIGNATURE_RSA_SHA256); - config.setSignatureReferenceDigestMethod(SignatureConstants.ALGO_ID_DIGEST_SHA256); - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/SAMLUserDetailsServiceImpl.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/SAMLUserDetailsServiceImpl.java deleted file mode 100644 index 79d8f37d9d3..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/saml/SAMLUserDetailsServiceImpl.java +++ /dev/null @@ -1,162 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.saml; - -import java.util.List; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; - -import org.cbioportal.model.User; -import org.cbioportal.model.UserAuthorities; -import org.cbioportal.persistence.SecurityRepository; -import org.cbioportal.security.spring.authentication.PortalUserDetails; - -import org.opensaml.saml2.core.Attribute; - -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.dao.EmptyResultDataAccessException; -import org.springframework.security.core.GrantedAuthority; -import org.springframework.security.core.authority.AuthorityUtils; -import org.springframework.security.core.userdetails.UsernameNotFoundException; -import org.springframework.security.saml.SAMLCredential; -import org.springframework.security.saml.userdetails.SAMLUserDetailsService; -import org.springframework.stereotype.Service; - -/** - * Custom UserDetailsService which parses SAML messages and checks authorization of - * user against cbioportal's `authorities` configuration. Authentication is done by the SAML IDP. - * - * @author Pieter Lukasse - */ -@Service -public class SAMLUserDetailsServiceImpl implements SAMLUserDetailsService -{ - private static final Log log = LogFactory.getLog(SAMLUserDetailsServiceImpl.class); - - private static String samlIdpMetadataEmailAttributeName; - @Value("${saml.idp.metadata.attribute.email:mail}") - public void setSamlIdpMetadataEmailAttributeName(String property) { this.samlIdpMetadataEmailAttributeName = property; } - - private static String samlIdpMetadataUserNameAttributeName; - @Value("${saml.idp.metadata.attribute.userName:username}") - public void setsamlIdpMetadataUserNameAttributeName(String property) { this.samlIdpMetadataUserNameAttributeName = property; } - - @Autowired - private SecurityRepository securityRepository; - - /** - * Constructor. - */ - public SAMLUserDetailsServiceImpl() { - } - - /** - * Implementation of {@code SAMLUserDetailsService}. Parses user details from given - * SAML credential object. - */ - @Override - public Object loadUserBySAML(SAMLCredential credential) - { - PortalUserDetails toReturn = null; - - String email = null; - String userName = null; - // get userid and name: iterate over attributes searching for "mail" and "displayName": - for (Attribute cAttribute : credential.getAttributes()) { - String attrName = cAttribute.getName(); - log.debug("loadUserBySAML(), parsing attribute: " + cAttribute.getName() + "=" + credential.getAttributeAsString(attrName)); - if (email == null && attrName.equals(samlIdpMetadataEmailAttributeName)) - { - email = credential.getAttributeAsString(attrName); - } - if (userName == null && attrName.equals(samlIdpMetadataUserNameAttributeName)) - { - userName = credential.getAttributeAsString(attrName); - } - } - - //check if this user exists in our DB - try { - //validate parsing: - if (email == null) { - String errorMessage = "loadUserBySAML(), Could not parse the user details from credential message. Expected '" + samlIdpMetadataEmailAttributeName + "' attribute, but attribute was not found. " - + " Previous debug messages show which attributes were found and parsed."; - log.error(errorMessage); - throw new Exception(errorMessage); - } - - log.debug("loadUserBySAML(), IDP successfully authenticated user, username: " + userName +", email: " + email); - log.debug("loadUserBySAML(), now attempting to fetch portal user authorities for user with username: " + userName +", email: " + email); - - //try to find user in DB - User user = securityRepository.getPortalUser(email); - if (user != null && user.isEnabled()) { - log.debug("loadUserBySAML(), user is enabled; attempting to fetch portal user authorities, for user with username: " + userName +", email: " + email); - - UserAuthorities authorities = securityRepository.getPortalUserAuthorities(email); - if (authorities != null) { - List grantedAuthorities = - AuthorityUtils.createAuthorityList(authorities.getAuthorities().toArray(new String[authorities.getAuthorities().size()])); - //add granted authorities: - toReturn = new PortalUserDetails(email, grantedAuthorities); - toReturn.setEmail(email); - toReturn.setUserName(userName); - } - } else if (user == null) { // new user - log.debug("loadUserBySAML(), user authorities is null, for user, with username: " + userName +", email: " + email + ". Depending on property always_show_study_group, " - + "he could still have default access (to PUBLIC studies)"); - toReturn = new PortalUserDetails(email, getInitialEmptyAuthoritiesList()); - toReturn.setEmail(email); - toReturn.setUserName(userName); - } else { - //user WAS found in DB but has been actively disabled: - throw new UsernameNotFoundException("Error: Your user access to cBioPortal has been disabled"); - } - return toReturn; - } - catch (UsernameNotFoundException unnf) { - //throw this exception, so that the user gets redirected to the error HTML page: - throw unnf; - } - catch (Exception e) { - //other (unexpected) errors: just throw (will result in http 500 page with error message): - log.error(e.getMessage()); - e.printStackTrace(); - throw new RuntimeException("Error during authentication parsing: " + e.getMessage()); - } - } - - /** - * Returns an initial empty authorities list. - * - * @return - */ - private List getInitialEmptyAuthoritiesList() - { - return AuthorityUtils.createAuthorityList(new String[0]); - } -} - diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/CustomUserDetailsService.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/CustomUserDetailsService.java deleted file mode 100644 index 893244de9da..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/CustomUserDetailsService.java +++ /dev/null @@ -1,43 +0,0 @@ -package org.cbioportal.security.spring.authentication.social; - -import java.util.ArrayList; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.security.core.GrantedAuthority; -import org.springframework.social.security.SocialUser; -import org.springframework.social.security.SocialUserDetailsService; - -import com.google.common.base.Preconditions; -import com.google.common.base.Strings; -import org.springframework.security.core.userdetails.User; -import org.springframework.security.core.userdetails.UserDetails; -import org.springframework.security.core.userdetails.UserDetailsService; -import org.springframework.security.core.userdetails.UsernameNotFoundException; - -public class CustomUserDetailsService implements SocialUserDetailsService, UserDetailsService { - - private static final Logger LOGGER = LoggerFactory.getLogger(CustomUserDetailsService.class); - - /** - * Loads the username by using the account ID of the user. - * @param userId The account ID of the requested user. - * @return The information of the requested user. - */ - - // TO-DO: remove SocialUserDetails? - - @Override - public org.springframework.social.security.SocialUserDetails loadUserByUserId(String userId) { - Preconditions.checkArgument(!Strings.isNullOrEmpty(userId), "A userid is required"); - LOGGER.debug("Loading user by user id: {}", userId); - - return new SocialUser(userId, "unused", new ArrayList()); - - } - - @Override - public UserDetails loadUserByUsername(String username) throws UsernameNotFoundException { - return new User(username, "unused", new ArrayList()); - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/PortalUserDetailsService.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/PortalUserDetailsService.java deleted file mode 100644 index 70d9aa90afe..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/PortalUserDetailsService.java +++ /dev/null @@ -1,126 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.social; - -import org.cbioportal.model.User; -import org.cbioportal.model.UserAuthorities; -import org.cbioportal.persistence.SecurityRepository; -import org.cbioportal.security.spring.authentication.PortalUserDetails; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import com.google.common.base.*; - -import org.springframework.beans.factory.annotation.Autowired; - -import org.springframework.security.core.userdetails.*; -import org.springframework.security.core.GrantedAuthority; -import org.springframework.security.core.authority.AuthorityUtils; - -import org.springframework.stereotype.Service; - -import java.util.List; - -/** - * Responsible for verifying that a social site user name has been registered in the - * portal database For registered users, an instance of GoogleplusUserDetails is - * completed and returned. Null is returned for non-registered users - * - * Implementation based on code in OpenIDUserDetailsService - * - * @author criscuof - */ -public class PortalUserDetailsService implements UserDetailsService { - - private static final Logger log = LoggerFactory.getLogger(PortalUserDetailsService.class); - - @Autowired - private SecurityRepository securityRepository; - - /** - * Constructor. - * - */ - public PortalUserDetailsService() { - } - - @Override - public UserDetails loadUserByUsername(String username) throws UsernameNotFoundException { - Preconditions.checkArgument(!Strings.isNullOrEmpty(username), "A username is required"); - // set the username into the global state so other components can find out who - // logged in or tried to log in most recently - if (log.isDebugEnabled()) { - log.debug("loadUserByUsername(), attempting to fetch portal user, email: " + username); - } - PortalUserDetails toReturn = null; - User user = null; - try { - user = securityRepository.getPortalUser(username); - } catch (Exception e ){ - log.debug("User " +username +" was not found in the cbio users table"); - log.debug("Error:" + e); - } - if (user != null && user.isEnabled()) { - if (log.isDebugEnabled()) { - log.debug("loadUserByUsername(), attempting to fetch portal user authorities, username: " + username); - } - UserAuthorities authorities = securityRepository.getPortalUserAuthorities(username); - if (authorities != null) { - List grantedAuthorities - = AuthorityUtils.createAuthorityList( - authorities.getAuthorities().toArray(new String[authorities.getAuthorities().size()])); - toReturn = new PortalUserDetails(username, grantedAuthorities); - toReturn.setEmail(user.getEmail()); - toReturn.setUserName(user.getName()); - - - } - } - - // outta here - if (toReturn == null) { - if (log.isDebugEnabled()) { - log.debug("loadUserByUsername(), user and/or user authorities is null, user name: " +username); - } - // use the Exception message to attache the username to the request object - throw new UsernameNotFoundException(username); - } - else { - if (log.isDebugEnabled()) { - log.debug("loadUserByUsername(), successfully authenticated user, user name: " + username); - } - return toReturn; - } - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/SocialConnectionSignUp.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/SocialConnectionSignUp.java deleted file mode 100644 index 598260be248..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/social/SocialConnectionSignUp.java +++ /dev/null @@ -1,61 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.social; - -import org.springframework.social.connect.Connection; -import org.springframework.social.connect.ConnectionSignUp; - -import com.google.common.base.Preconditions; -import com.google.common.base.Strings; - -/** - * provide an implementation of a ConnectionSignup that facilitates finding a user id in - * the user connection repository - * @author criscuof - * - */ -public final class SocialConnectionSignUp implements ConnectionSignUp { - - /* (non-Javadoc) - * @see org.springframework.social.connect.ConnectionSignUp#execute(org.springframework.social.connect.Connection) - */ - @Override - public String execute(Connection connection) { - Preconditions.checkArgument(null!=connection, "A Connection property is required"); - Preconditions.checkArgument(null != connection.getKey(), "The Connection must have a key"); - Preconditions.checkArgument(!Strings.isNullOrEmpty(connection.getKey().getProviderUserId()), "The Connection key must have a provider user id"); - return connection.getKey().getProviderUserId(); - - } - -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilter.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilter.java deleted file mode 100644 index 7820e0c3284..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilter.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token; - -import static com.google.common.net.HttpHeaders.AUTHORIZATION; - -import java.io.IOException; - -import javax.servlet.FilterChain; -import javax.servlet.ServletException; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.cbioportal.service.DataAccessTokenService; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.security.authentication.BadCredentialsException; -import org.springframework.security.core.Authentication; -import org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter; -import org.springframework.stereotype.Component; -import org.springframework.util.StringUtils; - -/** - * - * @author Manda Wilson - */ -@Component -public class TokenAuthenticationFilter extends AbstractAuthenticationProcessingFilter { - - @Autowired - private DataAccessTokenService tokenService; - - private static final String BEARER = "Bearer"; - - private static final Logger LOG = LoggerFactory.getLogger(TokenAuthenticationFilter.class); - - public TokenAuthenticationFilter() { - // allow any request to contain an authorization header - super("/**"); - } - - @Override - protected boolean requiresAuthentication(HttpServletRequest request, HttpServletResponse response) { - // only required if we do see an authorization header - String param = request.getHeader(AUTHORIZATION); - if (param == null) { - LOG.debug("attemptAuthentication(), authorization header is null, continue on to other security filters"); - return false; - } - return true; - } - - @Override - public Authentication attemptAuthentication ( - final HttpServletRequest request, - final HttpServletResponse response) { - - String token = extractHeaderToken(request); - - if (token == null) { - LOG.error("No token was found in request header."); - throw new BadCredentialsException("No token was found in request header."); - } - - Authentication auth = tokenService.createAuthenticationRequest(token); - - return getAuthenticationManager().authenticate(auth); - } - - @Override - protected void successfulAuthentication ( - final HttpServletRequest request, - final HttpServletResponse response, - final FilterChain chain, - final Authentication authResult) throws IOException, ServletException { - super.successfulAuthentication(request, response, chain, authResult); - chain.doFilter(request, response); - } - - /** - * Extract the bearer token from a header. - * - * @param request - * @return The token, or null if no authorization header was supplied - */ - protected String extractHeaderToken(HttpServletRequest request) { - String authorizationHeader = request.getHeader(AUTHORIZATION); - if (!StringUtils.isEmpty(authorizationHeader)) { - if ((authorizationHeader.toLowerCase().startsWith(BEARER.toLowerCase()))) { - return authorizationHeader.substring(BEARER.length()).trim(); - } - } - - return null; - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationSuccessHandler.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationSuccessHandler.java deleted file mode 100644 index f2941a8dd33..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationSuccessHandler.java +++ /dev/null @@ -1,48 +0,0 @@ -/* - * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.springframework.security.core.Authentication; -import org.springframework.security.web.authentication.AuthenticationSuccessHandler; - -public class TokenAuthenticationSuccessHandler implements AuthenticationSuccessHandler { - - @Override - public void onAuthenticationSuccess(HttpServletRequest request, HttpServletResponse response, Authentication authentication) { - // We do not need to do anything extra on REST authentication success, because there is no page to redirect to - } - -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenUserDetailsAuthenticationProvider.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenUserDetailsAuthenticationProvider.java deleted file mode 100644 index c320f93d508..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/TokenUserDetailsAuthenticationProvider.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.cbioportal.security.spring.authentication.social.PortalUserDetailsService; -import org.springframework.security.authentication.UsernamePasswordAuthenticationToken; -import org.springframework.security.authentication.dao.AbstractUserDetailsAuthenticationProvider; -import org.springframework.security.core.AuthenticationException; -import org.springframework.security.core.userdetails.UserDetails; - -/** - * - * @author Manda Wilson - */ -public class TokenUserDetailsAuthenticationProvider extends AbstractUserDetailsAuthenticationProvider { - - private static final Logger LOG = LoggerFactory.getLogger(TokenUserDetailsAuthenticationProvider.class); - - private PortalUserDetailsService userDetailsService; - - public TokenUserDetailsAuthenticationProvider(PortalUserDetailsService userDetailsService) { - this.userDetailsService = userDetailsService; - } - - @Override - public boolean supports(Class authentication) { - return authentication.isAssignableFrom(UsernamePasswordAuthenticationToken.class); - } - - @Override - protected void additionalAuthenticationChecks(UserDetails userDetails, UsernamePasswordAuthenticationToken authentication) - throws AuthenticationException { - } - - @Override - protected UserDetails retrieveUser(String username, UsernamePasswordAuthenticationToken authentication) - throws AuthenticationException { - LOG.debug("retrieveUser(), username - " + username); - return this.userDetailsService.loadUserByUsername(username); - } - -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/config/DataAccessTokenConfig.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/config/DataAccessTokenConfig.java deleted file mode 100644 index e984a261276..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/config/DataAccessTokenConfig.java +++ /dev/null @@ -1,68 +0,0 @@ -package org.cbioportal.security.spring.authentication.token.config; - -import org.cbioportal.security.spring.authentication.social.PortalUserDetailsService; -import org.cbioportal.security.spring.authentication.token.TokenUserDetailsAuthenticationProvider; -import org.cbioportal.security.spring.authentication.token.oauth2.OAuth2DataAccessTokenServiceImpl; -import org.cbioportal.security.spring.authentication.token.oauth2.OAuth2TokenAuthenticationProvider; -import org.cbioportal.service.impl.JwtDataAccessTokenServiceImpl; -import org.cbioportal.service.impl.UnauthDataAccessTokenServiceImpl; -import org.cbioportal.service.impl.UuidDataAccessTokenServiceImpl; -import org.cbioportal.utils.config.annotation.ConditionalOnProperty; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import org.springframework.context.annotation.PropertySources; - -@Configuration -@PropertySources({ - @PropertySource(value="classpath:portal.properties", ignoreResourceNotFound=true), - @PropertySource(value="file:///${PORTAL_HOME}/portal.properties", ignoreResourceNotFound=true) -}) -public class DataAccessTokenConfig { - - // provider - @Bean("tokenAuthenticationProvider") - @ConditionalOnProperty(name = "dat.method", havingValue = "oauth2") - public OAuth2TokenAuthenticationProvider oauth2TokenAuthenticationProvider() { - return new OAuth2TokenAuthenticationProvider(); - } - - @Bean("tokenAuthenticationProvider") - @ConditionalOnProperty(name = "dat.method", havingValue = "oauth2", isNot = true) - public TokenUserDetailsAuthenticationProvider userDetailsTokenAuthenticationProvider() { - return new TokenUserDetailsAuthenticationProvider(tokenUserDetailsService()); - } - - @Bean - @ConditionalOnProperty(name = "dat.method", havingValue = "oauth2", isNot = true) - public PortalUserDetailsService tokenUserDetailsService() { - return new PortalUserDetailsService(); - } - - - // service - @Bean("dataAccessTokenService") - @ConditionalOnProperty(name = "dat.method", havingValue = "oauth2") - public OAuth2DataAccessTokenServiceImpl oauth2DataAccessTokenService() { - return new OAuth2DataAccessTokenServiceImpl(); - } - - @Bean("dataAccessTokenService") - @ConditionalOnProperty(name = "dat.method", havingValue = "none", matchIfMissing = true) - public UnauthDataAccessTokenServiceImpl unauthDataAccessTokenService() { - return new UnauthDataAccessTokenServiceImpl(); - } - - @Bean("dataAccessTokenService") - @ConditionalOnProperty(name = "dat.method", havingValue = "uuid") - public UuidDataAccessTokenServiceImpl uuidDataAccessTokenService() { - return new UuidDataAccessTokenServiceImpl(); - } - - @Bean("dataAccessTokenService") - @ConditionalOnProperty(name = "dat.method", havingValue = "jwt") - public JwtDataAccessTokenServiceImpl jwtDataAccessTokenService() { - return new JwtDataAccessTokenServiceImpl(); - } - -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/JwtTokenVerifierBuilder.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/JwtTokenVerifierBuilder.java deleted file mode 100644 index 87a3745fc6e..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/JwtTokenVerifierBuilder.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ -package org.cbioportal.security.spring.authentication.token.oauth2; - -import java.net.MalformedURLException; -import java.net.URL; -import java.security.interfaces.RSAPublicKey; - -import com.auth0.jwk.Jwk; -import com.auth0.jwk.JwkException; -import com.auth0.jwk.JwkProvider; -import com.auth0.jwk.UrlJwkProvider; - -import org.springframework.beans.factory.annotation.Value; -import org.springframework.security.jwt.crypto.sign.RsaVerifier; -import org.springframework.stereotype.Component; - -// This bean is defined here so -// that it can be stubbed in tests. -@Component -public class JwtTokenVerifierBuilder { - - @Value("${dat.oauth2.jwkUrl:}") - private String jwkUrl; - - public JwtTokenVerifierBuilder() {} - - public RsaVerifier build(final String kid) throws MalformedURLException, JwkException { - final JwkProvider provider = new UrlJwkProvider(new URL(jwkUrl)); - final Jwk jwk = provider.get(kid); - final RSAPublicKey publicKey = (RSAPublicKey) jwk.getPublicKey(); - return new RsaVerifier(publicKey, "SHA512withRSA"); - } - -} \ No newline at end of file diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2BearerAuthenticationToken.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2BearerAuthenticationToken.java deleted file mode 100644 index d65f4d82537..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2BearerAuthenticationToken.java +++ /dev/null @@ -1,80 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import java.util.Collection; -import java.util.HashSet; - -import org.springframework.security.authentication.AbstractAuthenticationToken; -import org.springframework.security.core.GrantedAuthority; - -/** - * OAuth2BearerAuthenticationToken - */ -public class OAuth2BearerAuthenticationToken extends AbstractAuthenticationToken { - - private static final long serialVersionUID = 1L; - private final String accessToken; - private final Object principal; - - public OAuth2BearerAuthenticationToken(String accessToken) { - super(new HashSet<>()); - this.principal = null; - this.accessToken = accessToken; - } - - public OAuth2BearerAuthenticationToken(Object principal, String accessToken) { - super(new HashSet<>()); - this.accessToken = accessToken; - this.principal = principal; - } - - public OAuth2BearerAuthenticationToken(Object principal, Collection authorities) { - super(authorities); - accessToken = null; - this.principal = principal; - setAuthenticated(true); - } - - @Override - public Object getCredentials() { - return accessToken; - } - - @Override - public Object getPrincipal() { - return principal; - } - - -} \ No newline at end of file diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProvider.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProvider.java deleted file mode 100644 index 2ee9f8fa440..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProvider.java +++ /dev/null @@ -1,130 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import org.codehaus.jackson.JsonNode; -import org.codehaus.jackson.map.ObjectMapper; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.security.authentication.AuthenticationProvider; -import org.springframework.security.authentication.BadCredentialsException; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.AuthenticationException; -import org.springframework.security.core.GrantedAuthority; -import org.springframework.security.core.authority.SimpleGrantedAuthority; -import org.springframework.security.jwt.Jwt; -import org.springframework.security.jwt.JwtHelper; - -import java.io.IOException; -import java.util.Set; -import java.util.stream.Collectors; -import java.util.stream.StreamSupport; - -public class OAuth2TokenAuthenticationProvider implements AuthenticationProvider { - - @Value("${dat.oauth2.jwtRolesPath:resource_access::cbioportal::roles}") - private String jwtRolesPath; - - @Autowired - OAuth2TokenRefreshRestTemplate tokenRefreshRestTemplate; - - @Override - public boolean supports(Class authentication) { - return authentication.isAssignableFrom(OAuth2BearerAuthenticationToken.class); - } - - @Override - public Authentication authenticate(Authentication authentication) throws AuthenticationException { - - String offlineToken = (String) ((OAuth2BearerAuthenticationToken) authentication).getCredentials(); - - // Note: validity of the offline token is not checked in cBioPortal - // backend, is handeled by the OAuth2 authentication server. - - // request an access token from the OAuth2 identity provider - final String accessToken = tokenRefreshRestTemplate.getAccessToken(offlineToken); - - Set authorities = extractAuthorities(accessToken); - String username = getUsername(accessToken); - - return new OAuth2BearerAuthenticationToken(username, authorities); - } - - // Read roles/authorities from JWT token. - private Set extractAuthorities(final String token) throws BadCredentialsException { - try { - final Jwt tokenDecoded = JwtHelper.decode(token); - final String claims = tokenDecoded.getClaims(); - JsonNode claimsMap = new ObjectMapper().readTree(claims); - JsonNode rolesArrayCursor = claimsMap; - for (String keyName: jwtRolesPath.split("::")) { - if (rolesArrayCursor.has(keyName)) { - rolesArrayCursor = rolesArrayCursor.get(keyName); - } else { - throw new BadCredentialsException("Cannot find user roles in JWT access token with path '" - + jwtRolesPath + "''. Please ensure the dat.oauth2.jwtRolesPath property is correct."); - } - } - final JsonNode rolesArrayPointer = rolesArrayCursor; - final Iterable roles = () -> rolesArrayPointer.getElements(); - - return StreamSupport.stream(roles.spliterator(), false) - .map(role -> role.toString().replaceAll("\"", "")) - .map(role -> new SimpleGrantedAuthority(role)) - .collect(Collectors.toSet()); - - } catch (Exception e) { - throw new BadCredentialsException("Authorities could not be extracted from access token."); - } - } - - private String getUsername(final String token) { - - final Jwt tokenDecoded = JwtHelper.decode(token); - - final String claims = tokenDecoded.getClaims(); - JsonNode claimsMap; - try { - claimsMap = new ObjectMapper().readTree(claims); - } catch (IOException e) { - throw new BadCredentialsException("User name could not be found in access token."); - } - - if (! claimsMap.has("sub")) { - throw new BadCredentialsException("User name could not be found in access token."); - } - - return claimsMap.get("sub").asText(); - } - -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenDataAccessConfiguration.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenDataAccessConfiguration.java deleted file mode 100644 index eae6acd0f84..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenDataAccessConfiguration.java +++ /dev/null @@ -1,49 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.web.client.RestTemplate; - -@Configuration -public class OAuth2TokenDataAccessConfiguration { - - @Bean - // This bean is defined here so - // that it can be stubbed in tests. - public RestTemplate restTemplate() { - return new RestTemplate(); - } - -} \ No newline at end of file diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshRestTemplate.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshRestTemplate.java deleted file mode 100644 index 5c9e1347381..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshRestTemplate.java +++ /dev/null @@ -1,92 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import com.fasterxml.jackson.databind.ObjectMapper; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.http.HttpEntity; -import org.springframework.http.HttpHeaders; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.authentication.BadCredentialsException; -import org.springframework.stereotype.Component; -import org.springframework.util.LinkedMultiValueMap; -import org.springframework.util.MultiValueMap; -import org.springframework.web.client.RestTemplate; - -@Component -public class OAuth2TokenRefreshRestTemplate { - - private final Logger logger = LoggerFactory.getLogger(getClass()); - - @Value("${dat.oauth2.clientId:}") - private String clientId; - - @Value("${dat.oauth2.clientSecret:}") - private String clientSecret; - - @Value("${dat.oauth2.accessTokenUri:}") - private String accessTokenUri; - - @Autowired - private RestTemplate template; - - public String getAccessToken(String offline_token) throws BadCredentialsException { - HttpHeaders headers = new HttpHeaders(); - headers.setContentType(MediaType.APPLICATION_FORM_URLENCODED); - - MultiValueMap map = new LinkedMultiValueMap<>(); - map.add("grant_type", "refresh_token"); - map.add("client_id", clientId); - map.add("client_secret", clientSecret); - map.add("refresh_token", offline_token); - - HttpEntity> request = new HttpEntity<>(map, headers); - - ResponseEntity response = null; - try { - response = template.postForEntity(accessTokenUri, request, String.class); - String accessToken = new ObjectMapper().readTree(response.getBody()).get("access_token").asText(); - logger.debug("Recieved access token from authentication server:\n" + accessToken); - return accessToken; - } catch (Exception e) { - logger.error("Authentication server did not return an access token. Server response:\n" + response); - throw new BadCredentialsException("Authentication server did not return an access token."); - } - - } - -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/sessionservice/RestAuthenticationEntryPoint.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/sessionservice/RestAuthenticationEntryPoint.java deleted file mode 100644 index 856e4de23d8..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/sessionservice/RestAuthenticationEntryPoint.java +++ /dev/null @@ -1,52 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.sessionservice; - -import java.io.IOException; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.springframework.security.core.AuthenticationException; -import org.springframework.security.web.AuthenticationEntryPoint; -import org.springframework.stereotype.Component; - -@Component -public class RestAuthenticationEntryPoint implements AuthenticationEntryPoint{ - - @Override - public void commence( HttpServletRequest request, HttpServletResponse response, - AuthenticationException authException ) throws IOException{ - response.sendError( HttpServletResponse.SC_UNAUTHORIZED, "Unauthorized" ); - } -} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/sessionservice/SessionServiceSecurity.java b/security/security-spring/src/main/java/org/cbioportal/security/spring/sessionservice/SessionServiceSecurity.java deleted file mode 100644 index 759bd7945f4..00000000000 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/sessionservice/SessionServiceSecurity.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * Copyright (c) 2015 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ -package org.cbioportal.security.spring.sessionservice; - -import javax.servlet.http.HttpServletRequest; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -public class SessionServiceSecurity { - - private static String NUM_SESSION_SERVICE_REQ = "count_session_requests"; - private static int MAX_SESSION_SERVICE_REQ = 1000; - - private static Logger LOG = LoggerFactory.getLogger(SessionServiceSecurity.class); - - public boolean checkRead(HttpServletRequest request) { - return request.getSession(false) != null; - } - - public boolean checkWrite(HttpServletRequest request) { - if (request.getSession(false) == null) { - return false; - } - - Integer countRequests = (Integer) request.getSession().getAttribute(NUM_SESSION_SERVICE_REQ); - int count = 0; - if (countRequests == null) { - count = 1; - } else { - count = countRequests.intValue(); - count += 1; - } - LOG.debug("SessionServiceSecurity.check() -- " + count + - " session service API requests made by this session (MAX_SESSION_SERVICE_REQ = " + - MAX_SESSION_SERVICE_REQ + ")"); - request.getSession().setAttribute(NUM_SESSION_SERVICE_REQ, Integer.valueOf(count)); - if (MAX_SESSION_SERVICE_REQ < count) { - LOG.warn("SessionServiceSecurity.check() -- too many requests (" + count + - ") made by this session to the session service API (MAX_SESSION_SERVICE_REQ = " + - MAX_SESSION_SERVICE_REQ + ")"); - return false; - } - return true; - } -} diff --git a/security/security-spring/src/main/resources/applicationContext-security.xml b/security/security-spring/src/main/resources/applicationContext-security.xml deleted file mode 100644 index ba581665c25..00000000000 --- a/security/security-spring/src/main/resources/applicationContext-security.xml +++ /dev/null @@ -1,1026 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - classpath:portal.properties - file:///#{systemEnvironment['PORTAL_HOME']}/portal.properties - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ${saml.idp.metadata.location} - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ${saml.idp.metadata.location} - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - file:///${PORTAL_HOME}/portal.properties - classpath:portal.properties - classpath:maven.properties - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilterTest.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilterTest.java deleted file mode 100644 index c343c47a018..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilterTest.java +++ /dev/null @@ -1,122 +0,0 @@ -/* - * Copyright (c) 2018-2019 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.cbioportal.service.util.JwtUtils; -import org.junit.Assert; -import org.junit.runner.RunWith; -import org.junit.Test; -import org.mockito.ArgumentMatchers; -import org.mockito.Mockito; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.security.authentication.BadCredentialsException; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.userdetails.UserDetails; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringRunner; -import org.springframework.test.context.TestPropertySource; - -@TestPropertySource( - properties = { "dat.jwt.secret_key = +NbopXzb/AIQNrVEGzxzP5CF42e5drvrXTQot3gfW/s=", - "dat.ttl_seconds = 60", // this will be the default expiration for tokens - "dat.method = jwt" - }, - inheritLocations = false -) -@ContextConfiguration(classes=TokenAuthenticationFilterTestConfiguration.class) -@RunWith(SpringRunner.class) -public class TokenAuthenticationFilterTest { - - @Autowired - private JwtUtils jwtUtils; - - @Autowired - private HttpServletRequest request; - - @Autowired - private HttpServletResponse response; - - @Autowired - private TokenAuthenticationFilter tokenAuthenticationFilter; - - private static final int TEST_TOKEN_EXPIRATION_SECONDS = 1; - - private static final Logger LOG = LoggerFactory.getLogger(TokenAuthenticationFilterTest.class); - - // TODO: test requiresValidation() function maybe - - @Test - public void testAttemptAuthentication_success() { - String token = jwtUtils.createToken(TokenAuthenticationFilterTestConfiguration.TEST_SUBJECT).getToken(); - LOG.debug("testAttemptAuthentication_success() token = " + token); - Mockito.reset(request); - Mockito.when(request.getHeader(ArgumentMatchers.anyString())).thenReturn("Bearer " + token); - // response object is autowired above - Authentication authentication = tokenAuthenticationFilter.attemptAuthentication(request, response); - UserDetails userDetails = (UserDetails) authentication.getPrincipal(); - // userDetails is mocked and hard coded to return TokenAuthenticationFilterTestConfiguration.TEST_SUBJECT - // but we will only get TokenAuthenticationFilterTestConfiguration.TEST_SUBJECT if the token is valid and - // the authority provider (not mocked) successfully authenticated - // if the token is invalid or the authentication provider fails then exceptions are thrown - if (userDetails == null || userDetails.getUsername() == null || !userDetails.getUsername().equalsIgnoreCase(TokenAuthenticationFilterTestConfiguration.TEST_SUBJECT)) { - Assert.fail("principal username returned by authentication filter (" + userDetails == null ? "null" : userDetails.getUsername() + ") does not match token user : (" + TokenAuthenticationFilterTestConfiguration.TEST_SUBJECT +")"); - } - Mockito.reset(request); - } - - @Test(expected = BadCredentialsException.class) - public void testAttemptAuthentication_nullToken() { - Mockito.reset(request); - Mockito.when(request.getHeader(ArgumentMatchers.anyString())).thenReturn(null); - // response object is autowired above - tokenAuthenticationFilter.attemptAuthentication(request, response); - // make sure we call Mockito.reset(request) in other methods - } - - @Test(expected = BadCredentialsException.class) - public void testAttemptAuthentication_expiredToken() throws InterruptedException { - String token = jwtUtils.createToken(TokenAuthenticationFilterTestConfiguration.TEST_SUBJECT, TEST_TOKEN_EXPIRATION_SECONDS).getToken(); - LOG.debug("testAttemptAuthentication_expiredToken() token = " + token); - Mockito.reset(request); - Mockito.when(request.getHeader(ArgumentMatchers.anyString())).thenReturn("Bearer " + token); - Thread.sleep((TEST_TOKEN_EXPIRATION_SECONDS * 1000L) + 10L); // NOTE: sleep time must be adequate to allow created token to expire - // response object is autowired above - tokenAuthenticationFilter.attemptAuthentication(request, response); - // make sure we call Mockito.reset(request) in other methods - } - -} diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilterTestConfiguration.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilterTestConfiguration.java deleted file mode 100644 index eb75a7663bb..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/TokenAuthenticationFilterTestConfiguration.java +++ /dev/null @@ -1,115 +0,0 @@ -/* - * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * Copyright 2002-2018 the original author or authors. - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token; - -import org.cbioportal.security.spring.authentication.social.PortalUserDetailsService; -import org.cbioportal.service.DataAccessTokenService; -import org.cbioportal.service.impl.JwtDataAccessTokenServiceImpl; -import org.cbioportal.service.util.JwtUtils; -import org.mockito.ArgumentMatchers; -import org.mockito.Mockito; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.security.authentication.AuthenticationProvider; -import org.springframework.security.authentication.ProviderManager; -import org.springframework.security.core.userdetails.UserDetails; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.util.ArrayList; -import java.util.List; - -@Configuration -public class TokenAuthenticationFilterTestConfiguration { - - public static final String TEST_SUBJECT = "testSubject"; - - @Bean ProviderManager authenticationManager() { - List authenticationProviderList = new ArrayList(); - PortalUserDetailsService userDetailsService = Mockito.mock(PortalUserDetailsService.class); - UserDetails userDetails = Mockito.mock(UserDetails.class); - // See: https://github.com/spring-projects/spring-security/blob/master/core/src/main/java/org/springframework/security/authentication/dao/AbstractUserDetailsAuthenticationProvider.java#L350 - Mockito.when(userDetails.isAccountNonLocked()).thenReturn(true); - Mockito.when(userDetails.isEnabled()).thenReturn(true); - Mockito.when(userDetails.isAccountNonExpired()).thenReturn(true); - Mockito.when(userDetails.isCredentialsNonExpired()).thenReturn(true); - Mockito.when(userDetails.getUsername()).thenReturn(TEST_SUBJECT); - Mockito.when(userDetailsService.loadUserByUsername(ArgumentMatchers.anyString())).thenReturn(userDetails); - TokenUserDetailsAuthenticationProvider authenticationProvider = new TokenUserDetailsAuthenticationProvider(userDetailsService); - authenticationProviderList.add(authenticationProvider); - return new ProviderManager(authenticationProviderList); - } - - @Bean - public TokenAuthenticationFilter tokenAuthenticationFilter() { - TokenAuthenticationFilter filter = new TokenAuthenticationFilter(); - filter.setAuthenticationManager(authenticationManager()); - return filter; - } - - @Bean - public DataAccessTokenService tokenService() { - return new JwtDataAccessTokenServiceImpl(); - } - - @Bean - public JwtUtils jwtUtils() { - return new JwtUtils(); - } - - @Bean - public HttpServletRequest request() { - return Mockito.mock(HttpServletRequest.class); - } - - @Bean - public HttpServletResponse response() { - return Mockito.mock(HttpServletResponse.class); - } -} diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImplTest.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImplTest.java deleted file mode 100644 index 80f8751360d..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImplTest.java +++ /dev/null @@ -1,152 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import static org.cbioportal.security.spring.authentication.token.oauth2.OAuth2TokenTestUtils.createJwt; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNull; - -import org.cbioportal.model.DataAccessToken; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.security.authentication.BadCredentialsException; -import org.springframework.security.core.Authentication; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.TestPropertySource; -import org.springframework.test.context.junit4.SpringRunner; - - -@TestPropertySource( - properties = { - "dat.method = oauth2", - "dat.oauth2.issuer = my_issuer", - "dat.oauth2.clientId = my_client_id" - } -) -@ContextConfiguration(classes=OAuth2DataAccessTokenServiceImplTestConfiguration.class) -@RunWith(SpringRunner.class) -public class OAuth2DataAccessTokenServiceImplTest { - - static final String ACCESS_CODE_VALID = "dummy_valid_access_code"; - static final String ACCESS_CODE_INVALID = "dummy_invalid_access_code"; - static final String ACCESS_TOKEN = "dummy_access_token"; - - @Value("${dat.oauth2.issuer:}") - private String issuer; - - @Value("${dat.oauth2.clientId:}") - private String clientId; - - @Autowired - OAuth2DataAccessTokenServiceImpl service; - - @Test - public void testCreateDataAccessTokenSuccess() { - DataAccessToken accessToken = service.createDataAccessToken(ACCESS_CODE_VALID); - assertEquals(accessToken.getToken(), ACCESS_TOKEN); - } - - @Test(expected = BadCredentialsException.class) - public void testCreateDataAccessTokenFailure() { - service.createDataAccessToken(ACCESS_CODE_INVALID); - } - - @Test - public void testGetUsernameSuccess() { - String token = createJwt("{\"sub\":\"me\"}"); - assertEquals(service.getUsername(token), "me"); - } - - @Test(expected = BadCredentialsException.class) - public void testGetUsernameFailure() { - String token = createJwt("{}"); - service.getUsername(token); - } - - @Test - public void testCreateAuthenticationRequestSuccess() { - String token = createJwt("{\"sub\":\"me\"}"); - Authentication auth = service.createAuthenticationRequest(token); - assertEquals(auth.getCredentials(), token); - } - - @Test - public void testGetExpirationReturnsNull() { - assertNull(service.getExpiration("dummy_token")); - } - - @Test - public void testIsValidSuccess() { - String json = new StringBuilder() - .append("{") - .append("\"aud\":\"").append(clientId).append("\",") - .append("\"iss\":\"").append(issuer).append("\"") - .append("}") - .toString(); - - String token = createJwt(json); - - assert(service.isValid(token)); - } - - @Test(expected = BadCredentialsException.class) - public void testIsValidFailureAud() { - String json = new StringBuilder() - .append("{") - .append("\"aud\":\"").append("invalid_client_id").append("\",") - .append("\"iss\":\"").append(issuer).append("\"") - .append("}") - .toString(); - - String token = createJwt(json); - - service.isValid(token); - } - - @Test(expected = BadCredentialsException.class) - public void testIsValidFailureIss() { - String json = new StringBuilder() - .append("{") - .append("\"aud\":\"").append(clientId).append("\",") - .append("\"iss\":\"").append("invalid_issuer").append("\"") - .append("}") - .toString(); - - String token = createJwt(json); - - service.isValid(token); - } - -} \ No newline at end of file diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImplTestConfiguration.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImplTestConfiguration.java deleted file mode 100644 index d948603397c..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImplTestConfiguration.java +++ /dev/null @@ -1,99 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import static org.mockito.Matchers.any; -import static org.mockito.Matchers.anyString; -import static org.mockito.Matchers.eq; -import static org.mockito.Mockito.doNothing; -import static org.mockito.Mockito.mock; - -import org.mockito.Mockito; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.HttpEntity; -import org.springframework.http.HttpStatus; -import org.springframework.http.ResponseEntity; -import org.springframework.security.jwt.crypto.sign.RsaVerifier; -import org.springframework.util.LinkedMultiValueMap; -import org.springframework.web.client.RestTemplate; - -@Configuration -public class OAuth2DataAccessTokenServiceImplTestConfiguration { - - @Bean - public OAuth2DataAccessTokenServiceImpl dataAccessTokenService() { - return new OAuth2DataAccessTokenServiceImpl(); - } - - @Bean - public RestTemplate template() { - RestTemplate template = mock(RestTemplate.class); - - String jsonSuccess = "{\"refresh_token\":\"" + OAuth2DataAccessTokenServiceImplTest.ACCESS_TOKEN + "\"}"; - ResponseEntity responseSuccess = new ResponseEntity(jsonSuccess, HttpStatus.OK); - - String jsonFailure = "{\"error\":\"invalid_grant\"}"; - ResponseEntity responseFailure = new ResponseEntity(jsonFailure, HttpStatus.UNAUTHORIZED); - - Mockito.doAnswer(invocation -> { - @SuppressWarnings("unchecked") - HttpEntity> httpEntity = (HttpEntity>) invocation.getArguments()[1]; - String code = (String) httpEntity.getBody().get("code").get(0); - if (code.equals(OAuth2DataAccessTokenServiceImplTest.ACCESS_CODE_VALID)) { - return responseSuccess; - } - return responseFailure; - }).when(template).postForEntity(anyString(), any(HttpEntity.class), eq(String.class)); - - return template; - } - - @Bean - public JwtTokenVerifierBuilder jwtTokenVerifierBuilder() { - - // create a verifier that always returns true, - // i.e., does not throw an exception. - RsaVerifier verifier = mock(RsaVerifier.class); - doNothing().when(verifier).verify(any(), any()); - - // create a builder that returns the verifier - JwtTokenVerifierBuilder builder = mock(JwtTokenVerifierBuilder.class); - try { - Mockito.when(builder.build(anyString())).thenReturn(verifier); - } catch (Exception e) {} - - return builder; - } - -} diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProviderTest.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProviderTest.java deleted file mode 100644 index 1287c79691d..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProviderTest.java +++ /dev/null @@ -1,78 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import static org.junit.Assert.assertArrayEquals; -import static org.junit.Assert.assertEquals; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.security.authentication.BadCredentialsException; -import org.springframework.security.core.Authentication; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringRunner; - -@ContextConfiguration(classes = OAuth2TokenAuthenticationProviderTestConfiguration.class) -@RunWith(SpringRunner.class) -public class OAuth2TokenAuthenticationProviderTest { - - public static String USER_ROLE_1 = "dummy_role_1"; - public static String USER_ROLE_2 = "dummy_role_2"; - public static String OFFLINE_TOKEN_VALID = "my_valid_offline_token"; - public static String OFFLINE_TOKEN_MALFORMED_JSON = "dummy_malformed_json_response"; - - @Autowired - private OAuth2TokenAuthenticationProvider provider; - - @Test - public void testAuthenticateSuccess() { - - Authentication authRequest = new OAuth2BearerAuthenticationToken(OFFLINE_TOKEN_VALID); - Authentication authGranted = provider.authenticate(authRequest); - - String[] authorities = authGranted.getAuthorities().stream() - .map(a -> a.toString()) - .toArray(String[]::new); - - assertEquals(authGranted.getPrincipal(), "username"); - assertArrayEquals(authorities, new String[] {USER_ROLE_1, USER_ROLE_2}); - } - - @Test(expected = BadCredentialsException.class) - public void testAuthenticateFailureMalformedJson() { - Authentication authRequest = new OAuth2BearerAuthenticationToken(OFFLINE_TOKEN_MALFORMED_JSON); - provider.authenticate(authRequest); - } - -} \ No newline at end of file diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProviderTestConfiguration.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProviderTestConfiguration.java deleted file mode 100644 index 49a26f68dc4..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenAuthenticationProviderTestConfiguration.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import static org.cbioportal.security.spring.authentication.token.oauth2.OAuth2TokenTestUtils.createJwt; -import static org.mockito.Matchers.anyString; -import static org.mockito.Mockito.mock; - -import org.mockito.Mockito; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.web.client.RestTemplate; - -@Configuration -public class OAuth2TokenAuthenticationProviderTestConfiguration { - - @Bean - public OAuth2TokenAuthenticationProvider provider() { - return new OAuth2TokenAuthenticationProvider(); - } - - @Bean - public OAuth2TokenRefreshRestTemplate tokenRefreshRestTemplate() { - - String jsonSuccess = new StringBuilder() - .append("{") - .append("\"resource_access\":") - .append("{") - .append("\"cbioportal\":") - .append("{") - .append("\"roles\": [") - .append("\"").append(OAuth2TokenAuthenticationProviderTest.USER_ROLE_1).append("\",") - .append("\"").append(OAuth2TokenAuthenticationProviderTest.USER_ROLE_2).append("\"") - .append("]") - .append("}") - .append("}") - .append(",\"sub\": \"username\"") - .append("}") - .toString(); - - - String accessTokenSuccess = createJwt(jsonSuccess); - - String jsonMalformedJson = new StringBuilder() - .append("{") - .append("\"resource_access\":") - .append("{}") - .append("}") - .toString(); - - String accessTokenMalformedJson = createJwt(jsonMalformedJson); - - OAuth2TokenRefreshRestTemplate template = mock(OAuth2TokenRefreshRestTemplate.class); - Mockito.doAnswer(invocation -> { - String offlineToken = (String) invocation.getArguments()[0]; - if (offlineToken.equals(OAuth2TokenAuthenticationProviderTest.OFFLINE_TOKEN_MALFORMED_JSON)) { - return accessTokenMalformedJson; - } - return accessTokenSuccess; - }).when(template).getAccessToken(anyString()); - - return template; - } - - @Bean - public RestTemplate restTemplate() { - return new RestTemplate(); - } - -} \ No newline at end of file diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshTemplateTest.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshTemplateTest.java deleted file mode 100644 index 0b928a6d870..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshTemplateTest.java +++ /dev/null @@ -1,66 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import static org.junit.Assert.assertEquals; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.security.authentication.BadCredentialsException; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringRunner; - -@ContextConfiguration(classes = OAuth2TokenRefreshTemplateTestConfiguration.class) -@RunWith(SpringRunner.class) -public class OAuth2TokenRefreshTemplateTest { - - public static String ACCESS_TOKEN = "dummy_access_token"; - public static String OFFLINE_TOKEN_VALID = "dummy_valid_offline_token"; - public static String OFFLINE_TOKEN_INVALID = "dummy_invalid_offline_token"; - - @Autowired - private OAuth2TokenRefreshRestTemplate tokenRefreshTemplate; - - @Test - public void testGetAccessTokenSuccess() { - String accessToken = tokenRefreshTemplate.getAccessToken(OFFLINE_TOKEN_VALID); - assertEquals(accessToken, ACCESS_TOKEN); - } - - @Test(expected = BadCredentialsException.class) - public void testGetAccessTokenFailure() { - tokenRefreshTemplate.getAccessToken(OFFLINE_TOKEN_INVALID); - } - -} diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshTemplateTestConfiguration.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshTemplateTestConfiguration.java deleted file mode 100644 index b990f96fa6f..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenRefreshTemplateTestConfiguration.java +++ /dev/null @@ -1,81 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import static org.mockito.Matchers.any; -import static org.mockito.Matchers.anyString; -import static org.mockito.Matchers.eq; -import static org.mockito.Mockito.mock; - -import org.mockito.Mockito; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.HttpEntity; -import org.springframework.http.HttpStatus; -import org.springframework.http.ResponseEntity; -import org.springframework.util.LinkedMultiValueMap; -import org.springframework.web.client.RestTemplate; - -@Configuration -public class OAuth2TokenRefreshTemplateTestConfiguration { - - @Bean - public OAuth2TokenRefreshRestTemplate tokenRefreshTemplate() { - return new OAuth2TokenRefreshRestTemplate(); - } - - @Bean - public RestTemplate template() { - final RestTemplate template = mock(RestTemplate.class); - - final String jsonSuccess = "{\"access_token\":\"" + OAuth2TokenRefreshTemplateTest.ACCESS_TOKEN + "\"}"; - final ResponseEntity responseSuccess = new ResponseEntity(jsonSuccess, HttpStatus.OK); - - final String jsonFailure = "{\"error\":\"invalid_grant\"}"; - final ResponseEntity responseFailure = new ResponseEntity(jsonFailure, HttpStatus.UNAUTHORIZED); - - Mockito.doAnswer(invocation -> { - @SuppressWarnings("unchecked") - final - HttpEntity> httpEntity = (HttpEntity>) invocation.getArguments()[1]; - final String code = (String) httpEntity.getBody().get("refresh_token").get(0); - if (code.equals(OAuth2TokenRefreshTemplateTest.OFFLINE_TOKEN_VALID)) { - return responseSuccess; - } - return responseFailure; - }).when(template).postForEntity(anyString(), any(HttpEntity.class), eq(String.class)); - - return template; - } - -} diff --git a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenTestUtils.java b/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenTestUtils.java deleted file mode 100644 index abb2286ca44..00000000000 --- a/security/security-spring/src/test/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2TokenTestUtils.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.security.spring.authentication.token.oauth2; - -import org.springframework.security.jwt.JwtHelper; -import org.springframework.security.jwt.crypto.sign.MacSigner; - -import java.util.HashMap; -import java.util.Map; - -public class OAuth2TokenTestUtils { - - public static String createJwt(String claimsJson) { - MacSigner signer = new MacSigner("dummy_private_key"); - Map header = new HashMap<>(); - header.put("kid", "my_token_id"); - return JwtHelper.encode(claimsJson, signer, header).getEncoded(); - } - -} \ No newline at end of file diff --git a/security/security-spring/src/test/resources/logback.xml b/security/security-spring/src/test/resources/logback.xml deleted file mode 100644 index 9d21a927c45..00000000000 --- a/security/security-spring/src/test/resources/logback.xml +++ /dev/null @@ -1,24 +0,0 @@ - - - - - %d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n - - - - - - - - - - - \ No newline at end of file diff --git a/service/pom.xml b/service/pom.xml deleted file mode 100644 index a46d74484dc..00000000000 --- a/service/pom.xml +++ /dev/null @@ -1,113 +0,0 @@ - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - - service - - - - org.mskcc.cbio - persistence-mybatis - - - org.mskcc.cbio - model - - - org.mskcc.cbio - permission-evaluator - - - com.github.cbioportal - session-service - model - - - org.apache.logging.log4j - log4j-to-slf4j - - - ch.qos.logback - logback-classic - - - spring-boot-starter-web - org.springframework.boot - - - spring-boot-starter-data-mongodb - org.springframework.boot - - - - - org.springframework - spring-test - test - - - io.jsonwebtoken - jjwt-api - - - io.jsonwebtoken - jjwt-impl - - - io.jsonwebtoken - jjwt-jackson - - - mysql - mysql-connector-java - - - org.apache.commons - commons-lang3 - - - org.apache.commons - commons-math3 - - - org.apache.commons - commons-collections4 - - - commons-codec - commons-codec - - - org.mockito - mockito-core - - - org.mybatis - mybatis-spring - - - commons-beanutils - commons-beanutils - - - org.springframework.security - spring-security-config - - - org.springframework - spring-web - - - junit - junit - - - - diff --git a/service/src/main/java/org/cbioportal/service/util/AppConfig.java b/service/src/main/java/org/cbioportal/service/util/AppConfig.java deleted file mode 100644 index 09b37f5f2df..00000000000 --- a/service/src/main/java/org/cbioportal/service/util/AppConfig.java +++ /dev/null @@ -1,30 +0,0 @@ -package org.cbioportal.service.util; - -import org.springframework.core.env.Environment; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Configuration; -import org.springframework.scheduling.annotation.EnableAsync; -import org.springframework.scheduling.annotation.AsyncConfigurer; -import org.springframework.scheduling.concurrent.ThreadPoolTaskExecutor; - -import java.lang.Runtime; -import java.util.concurrent.Executor; - -@Configuration -@EnableAsync -public class AppConfig implements AsyncConfigurer { - - @Autowired - private Environment env; - - @Override - public Executor getAsyncExecutor() { - ThreadPoolTaskExecutor executor = new ThreadPoolTaskExecutor(); - int corePoolSize = env.getProperty("multithread.core_pool_size", int.class, Runtime.getRuntime().availableProcessors()); - executor.setCorePoolSize(corePoolSize); - executor.setThreadNamePrefix("ThreadPoolTaskExecutor-"); - executor.initialize(); - return executor; - } - -} diff --git a/service/src/test/resources/logback.xml b/service/src/test/resources/logback.xml deleted file mode 100644 index 9d21a927c45..00000000000 --- a/service/src/test/resources/logback.xml +++ /dev/null @@ -1,24 +0,0 @@ - - - - - %d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n - - - - - - - - - - - \ No newline at end of file diff --git a/src/main/etc/jetty-cbioportal.xml b/src/main/etc/jetty-cbioportal.xml deleted file mode 100644 index 36866c0c094..00000000000 --- a/src/main/etc/jetty-cbioportal.xml +++ /dev/null @@ -1,198 +0,0 @@ - - - - - - 32768 - 8192 - 8192 - - - - - - - org.eclipse.jetty.webapp.FragmentConfiguration - - - org.eclipse.jetty.plus.webapp.EnvConfiguration - org.eclipse.jetty.plus.webapp.PlusConfiguration - - - - - - - - - - - - - - - - - - - - - - - - - - file:///src/main/etc/override-web.xml - - / - - - - - java.io.tmpdir - - - - - embedded-jetty-jsp - - - - javax.servlet.context.tempdir - - - - - - org.eclipse.jetty.server.webapp.ContainerIncludeJarPattern - .*/[^/]*servlet-api-[^/]*\.jar$|.*/javax.servlet.jsp.jstl-.*\.jar$|.*/.*taglibs.*\.jar$ - - - org.apache.tomcat.InstanceManager - - - - - spring.profiles.active - default,dbcp - - - - - - - - - true - - - - - - file:///portal/target/portal - - - - - - - - - - org.eclipse.jetty.containerInitializers - - - - - - - - - - - - - - - - - - - default - - - org.eclipse.jetty.servlet.DefaultServlet - - - resourceBase - dirAllowedtrue - - - / - - - - - - - jsp - - - org.eclipse.jetty.jsp.JettyJspServlet - - - 0 - logVerbosityLevelDEBUG - forkfalse - xpoweredByfalse - compilerTargetVM1.7 - compilerSourceVM1.7 - keepgeneratedtrue - - - *.jsp - - - - ca.uhnresearch.pughlab.tracker.server.httpd.EmbeddedJettyServer - - - - - - - - - - - - - - - - - jdbc/cbioportal - - - com.mysql.jdbc.Driver - jdbc:mysql://localhost/cbioportal - cbioportal - cbioportal - true - SELECT 1 - - - - - - - - - - true - - - - - diff --git a/src/main/etc/override-web.xml b/src/main/etc/override-web.xml deleted file mode 100644 index 27979f92451..00000000000 --- a/src/main/etc/override-web.xml +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - jdbc/cbioportal - javax.sql.DataSource - Container - - - diff --git a/src/main/java/org/cbioportal/AsyncConfig.java b/src/main/java/org/cbioportal/AsyncConfig.java new file mode 100644 index 00000000000..a1e5b3041a4 --- /dev/null +++ b/src/main/java/org/cbioportal/AsyncConfig.java @@ -0,0 +1,31 @@ +package org.cbioportal; + +import org.springframework.beans.factory.annotation.Value; +import org.springframework.core.env.Environment; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Configuration; +import org.springframework.scheduling.annotation.EnableAsync; +import org.springframework.scheduling.annotation.AsyncConfigurer; +import org.springframework.scheduling.concurrent.ThreadPoolTaskExecutor; + +import java.lang.Runtime; +import java.util.concurrent.Executor; + +@Configuration +@EnableAsync +public class AsyncConfig implements AsyncConfigurer { + + + @Value("${multithread.core_pool_size:#{T(java.lang.Runtime).getRuntime().availableProcessors()}}") + private int corePoolSize; + + @Override + public Executor getAsyncExecutor() { + ThreadPoolTaskExecutor executor = new ThreadPoolTaskExecutor(); + executor.setCorePoolSize(corePoolSize); + executor.setThreadNamePrefix("ThreadPoolTaskExecutor-"); + executor.initialize(); + return executor; + } + +} diff --git a/src/main/java/org/cbioportal/PortalApplication.java b/src/main/java/org/cbioportal/PortalApplication.java new file mode 100644 index 00000000000..5aded5fa465 --- /dev/null +++ b/src/main/java/org/cbioportal/PortalApplication.java @@ -0,0 +1,24 @@ +package org.cbioportal; + +import org.springframework.boot.SpringApplication; +import org.springframework.boot.autoconfigure.SpringBootApplication; +import org.springframework.boot.autoconfigure.data.mongo.MongoDataAutoConfiguration; +import org.springframework.boot.autoconfigure.mongo.MongoAutoConfiguration; +import org.springframework.context.annotation.PropertySource; +import org.springframework.context.annotation.PropertySources; + +@SpringBootApplication(exclude = { + MongoAutoConfiguration.class, + MongoDataAutoConfiguration.class +}) +@PropertySources({ + @PropertySource(ignoreResourceNotFound = true, value = "classpath:portal.properties"), + @PropertySource(ignoreResourceNotFound = true, value = "classpath:security.properties"), + @PropertySource(ignoreResourceNotFound = true, value = "classpath:maven.properties"), + @PropertySource(ignoreResourceNotFound = true, value = "classpath:git.properties") +}) +public class PortalApplication { + public static void main(String[] args) { + SpringApplication.run(PortalApplication.class, args); + } +} diff --git a/src/main/java/org/cbioportal/WebAppConfig.java b/src/main/java/org/cbioportal/WebAppConfig.java new file mode 100644 index 00000000000..612884dad51 --- /dev/null +++ b/src/main/java/org/cbioportal/WebAppConfig.java @@ -0,0 +1,64 @@ +package org.cbioportal; + +import org.cbioportal.web.util.InvolvedCancerStudyExtractorInterceptor; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.web.servlet.HandlerInterceptor; +import org.springframework.web.servlet.config.annotation.InterceptorRegistry; +import org.springframework.web.servlet.config.annotation.ResourceHandlerRegistry; +import org.springframework.web.servlet.config.annotation.ViewControllerRegistry; +import org.springframework.web.servlet.config.annotation.WebMvcConfigurer; + +// TODO Consider creating separate DispatcherServlets as in the original web.xml +// See: https://stackoverflow.com/a/30686733/11651683 +@Configuration +//@EnableAspectJAutoProxy // TODO no idea what this does; is this logging aspect still useful? +public class WebAppConfig implements WebMvcConfigurer { + + private static final String SINGLE_PAGE_APP_ROOT = "forward:/"; + + @Override + public void addResourceHandlers(ResourceHandlerRegistry registry) { + registry.addResourceHandler("/images/**").addResourceLocations("classpath:/webapp/images/"); + registry.addResourceHandler("/reactapp/**").addResourceLocations("classpath:/reactapp/"); + registry.addResourceHandler("/js/**").addResourceLocations("classpath:/js/"); + } + + @Override + public void addViewControllers(ViewControllerRegistry registry) { + registry.addRedirectViewController("/api", "/swagger-ui.html"); + + + // Redirects for single page app + registry.addViewController("/results/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/results**").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/patient/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/patient**").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/study/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/study").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/mutation_mapper/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/mutation_mapper").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/index.do/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/case.do/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/loading/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/comparison").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/comparison/*").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/restore").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/index.do**").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/oncoprinter**").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/encodedRedirect").setViewName(SINGLE_PAGE_APP_ROOT); + registry.addViewController("/datasets**").setViewName(SINGLE_PAGE_APP_ROOT); + + } + + @Bean + public HandlerInterceptor involvedCancerStudyExtractorInterceptor() { + return new InvolvedCancerStudyExtractorInterceptor(); + } + + @Override + public void addInterceptors(InterceptorRegistry registry) { + registry.addInterceptor(involvedCancerStudyExtractorInterceptor()); + } + +} diff --git a/web/src/main/java/org/cbioportal/documentation/ExternalPageController.java b/src/main/java/org/cbioportal/documentation/ExternalPageController.java similarity index 95% rename from web/src/main/java/org/cbioportal/documentation/ExternalPageController.java rename to src/main/java/org/cbioportal/documentation/ExternalPageController.java index 2b414207422..c8a246d38ed 100644 --- a/web/src/main/java/org/cbioportal/documentation/ExternalPageController.java +++ b/src/main/java/org/cbioportal/documentation/ExternalPageController.java @@ -25,7 +25,7 @@ public class ExternalPageController { // available via GET method // sourceURL is required @Transactional - @RequestMapping(value = "/getexternalpage.json", method = {RequestMethod.GET}) + @RequestMapping(value = "/api/getexternalpage.json", method = {RequestMethod.GET}) public @ResponseBody Map getExternalPage(@RequestParam(required = true) String sourceURL) throws IOException { String decodedString, pageText = ""; diff --git a/model/src/main/java/org/cbioportal/model/AlleleSpecificCopyNumber.java b/src/main/java/org/cbioportal/model/AlleleSpecificCopyNumber.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/AlleleSpecificCopyNumber.java rename to src/main/java/org/cbioportal/model/AlleleSpecificCopyNumber.java diff --git a/model/src/main/java/org/cbioportal/model/Alteration.java b/src/main/java/org/cbioportal/model/Alteration.java similarity index 98% rename from model/src/main/java/org/cbioportal/model/Alteration.java rename to src/main/java/org/cbioportal/model/Alteration.java index 42883990246..1e7e6e96cde 100644 --- a/model/src/main/java/org/cbioportal/model/Alteration.java +++ b/src/main/java/org/cbioportal/model/Alteration.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class Alteration extends UniqueKeyBase { diff --git a/model/src/main/java/org/cbioportal/model/AlterationCountBase.java b/src/main/java/org/cbioportal/model/AlterationCountBase.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/AlterationCountBase.java rename to src/main/java/org/cbioportal/model/AlterationCountBase.java diff --git a/model/src/main/java/org/cbioportal/model/AlterationCountByGene.java b/src/main/java/org/cbioportal/model/AlterationCountByGene.java similarity index 94% rename from model/src/main/java/org/cbioportal/model/AlterationCountByGene.java rename to src/main/java/org/cbioportal/model/AlterationCountByGene.java index d3a6ecf3d62..0c09a79351f 100644 --- a/model/src/main/java/org/cbioportal/model/AlterationCountByGene.java +++ b/src/main/java/org/cbioportal/model/AlterationCountByGene.java @@ -1,5 +1,7 @@ package org.cbioportal.model; +import com.fasterxml.jackson.annotation.JsonProperty; + import java.math.BigDecimal; public class AlterationCountByGene extends AlterationCountBase { @@ -33,6 +35,7 @@ public void setNumberOfAlteredCases(Integer numberOfAlteredCases) { this.numberOfAlteredCases = numberOfAlteredCases; } + @JsonProperty("qValue") public BigDecimal getqValue() { return qValue; } diff --git a/model/src/main/java/org/cbioportal/model/AlterationCountByStructuralVariant.java b/src/main/java/org/cbioportal/model/AlterationCountByStructuralVariant.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/AlterationCountByStructuralVariant.java rename to src/main/java/org/cbioportal/model/AlterationCountByStructuralVariant.java diff --git a/model/src/main/java/org/cbioportal/model/AlterationDriverAnnotation.java b/src/main/java/org/cbioportal/model/AlterationDriverAnnotation.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/AlterationDriverAnnotation.java rename to src/main/java/org/cbioportal/model/AlterationDriverAnnotation.java diff --git a/model/src/main/java/org/cbioportal/model/AlterationEnrichment.java b/src/main/java/org/cbioportal/model/AlterationEnrichment.java similarity index 90% rename from model/src/main/java/org/cbioportal/model/AlterationEnrichment.java rename to src/main/java/org/cbioportal/model/AlterationEnrichment.java index 9c1d4cbda29..d1fdbc4ba34 100644 --- a/model/src/main/java/org/cbioportal/model/AlterationEnrichment.java +++ b/src/main/java/org/cbioportal/model/AlterationEnrichment.java @@ -4,7 +4,8 @@ import java.math.BigDecimal; import java.util.List; -import javax.validation.constraints.NotNull; +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; public class AlterationEnrichment implements Serializable { @@ -41,6 +42,7 @@ public void setCytoband(String cytoband) { this.cytoband = cytoband; } + @JsonProperty("pValue") public BigDecimal getpValue() { return pValue; } diff --git a/model/src/main/java/org/cbioportal/model/AlterationFilter.java b/src/main/java/org/cbioportal/model/AlterationFilter.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/AlterationFilter.java rename to src/main/java/org/cbioportal/model/AlterationFilter.java diff --git a/model/src/main/java/org/cbioportal/model/AlterationType.java b/src/main/java/org/cbioportal/model/AlterationType.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/AlterationType.java rename to src/main/java/org/cbioportal/model/AlterationType.java diff --git a/model/src/main/java/org/cbioportal/model/BaseAlterationFilter.java b/src/main/java/org/cbioportal/model/BaseAlterationFilter.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/BaseAlterationFilter.java rename to src/main/java/org/cbioportal/model/BaseAlterationFilter.java diff --git a/model/src/main/java/org/cbioportal/model/Binnable.java b/src/main/java/org/cbioportal/model/Binnable.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/Binnable.java rename to src/main/java/org/cbioportal/model/Binnable.java diff --git a/model/src/main/java/org/cbioportal/model/CNA.java b/src/main/java/org/cbioportal/model/CNA.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/CNA.java rename to src/main/java/org/cbioportal/model/CNA.java diff --git a/src/main/java/org/cbioportal/model/CancerStudy.java b/src/main/java/org/cbioportal/model/CancerStudy.java new file mode 100644 index 00000000000..48ed6103abb --- /dev/null +++ b/src/main/java/org/cbioportal/model/CancerStudy.java @@ -0,0 +1,242 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import java.util.Date; +import jakarta.validation.constraints.NotNull; + +public class CancerStudy implements ReadPermission, Serializable { + + private Integer cancerStudyId; + @NotNull + private String cancerStudyIdentifier; + private String typeOfCancerId; + private String name; + private String description; + private Boolean publicStudy; + private String pmid; + private String citation; + private String groups; + private Integer status; + private Date importDate; + private TypeOfCancer typeOfCancer; + private Integer allSampleCount; + private Integer sequencedSampleCount; + private Integer cnaSampleCount; + private Integer mrnaRnaSeqSampleCount; + private Integer mrnaRnaSeqV2SampleCount; + private Integer mrnaMicroarraySampleCount; + private Integer miRnaSampleCount; + private Integer methylationHm27SampleCount; + private Integer rppaSampleCount; + private Integer massSpectrometrySampleCount; + private Integer completeSampleCount; + private String referenceGenome; + private Boolean readPermission = true; + private Integer treatmentCount; + + public Integer getCancerStudyId() { + return cancerStudyId; + } + + public void setCancerStudyId(Integer cancerStudyId) { + this.cancerStudyId = cancerStudyId; + } + + public String getCancerStudyIdentifier() { + return cancerStudyIdentifier; + } + + public void setCancerStudyIdentifier(String cancerStudyIdentifier) { + this.cancerStudyIdentifier = cancerStudyIdentifier; + } + + public String getTypeOfCancerId() { + return typeOfCancerId; + } + + public void setTypeOfCancerId(String typeOfCancerId) { + this.typeOfCancerId = typeOfCancerId; + } + + public String getName() { + return name; + } + + public void setName(String name) { + this.name = name; + } + + public String getDescription() { + return description; + } + + public void setDescription(String description) { + this.description = description; + } + + public Boolean getPublicStudy() { + return publicStudy; + } + + public void setPublicStudy(Boolean publicStudy) { + this.publicStudy = publicStudy; + } + + public String getPmid() { + return pmid; + } + + public void setPmid(String pmid) { + this.pmid = pmid; + } + + public String getCitation() { + return citation; + } + + public void setCitation(String citation) { + this.citation = citation; + } + + public String getGroups() { + return groups; + } + + public void setGroups(String groups) { + this.groups = groups; + } + + public Integer getStatus() { + return status; + } + + public void setStatus(Integer status) { + this.status = status; + } + + public Date getImportDate() { + return importDate; + } + + public void setImportDate(Date importDate) { + this.importDate = importDate; + } + + public TypeOfCancer getTypeOfCancer() { + return typeOfCancer; + } + + public void setTypeOfCancer(TypeOfCancer typeOfCancer) { + this.typeOfCancer = typeOfCancer; + } + + public Integer getAllSampleCount() { + return allSampleCount; + } + + public void setAllSampleCount(Integer allSampleCount) { + this.allSampleCount = allSampleCount; + } + + public Integer getSequencedSampleCount() { + return sequencedSampleCount; + } + + public void setSequencedSampleCount(Integer sequencedSampleCount) { + this.sequencedSampleCount = sequencedSampleCount; + } + + public Integer getCnaSampleCount() { + return cnaSampleCount; + } + + public void setCnaSampleCount(Integer cnaSampleCount) { + this.cnaSampleCount = cnaSampleCount; + } + + public Integer getMrnaRnaSeqSampleCount() { + return mrnaRnaSeqSampleCount; + } + + public void setMrnaRnaSeqSampleCount(Integer mrnaRnaSeqSampleCount) { + this.mrnaRnaSeqSampleCount = mrnaRnaSeqSampleCount; + } + + public Integer getMrnaRnaSeqV2SampleCount() { + return mrnaRnaSeqV2SampleCount; + } + + public void setMrnaRnaSeqV2SampleCount(Integer mrnaRnaSeqV2SampleCount) { + this.mrnaRnaSeqV2SampleCount = mrnaRnaSeqV2SampleCount; + } + + public Integer getMrnaMicroarraySampleCount() { + return mrnaMicroarraySampleCount; + } + + public void setMrnaMicroarraySampleCount(Integer mrnaMicroarraySampleCount) { + this.mrnaMicroarraySampleCount = mrnaMicroarraySampleCount; + } + + public Integer getMiRnaSampleCount() { + return miRnaSampleCount; + } + + public void setMiRnaSampleCount(Integer miRnaSampleCount) { + this.miRnaSampleCount = miRnaSampleCount; + } + + public Integer getMethylationHm27SampleCount() { + return methylationHm27SampleCount; + } + + public void setMethylationHm27SampleCount(Integer methylationHm27SampleCount) { + this.methylationHm27SampleCount = methylationHm27SampleCount; + } + + public Integer getRppaSampleCount() { + return rppaSampleCount; + } + + public void setRppaSampleCount(Integer rppaSampleCount) { + this.rppaSampleCount = rppaSampleCount; + } + + public Integer getCompleteSampleCount() { + return completeSampleCount; + } + + public void setCompleteSampleCount(Integer completeSampleCount) { + this.completeSampleCount = completeSampleCount; + } + + public Integer getMassSpectrometrySampleCount() { + return massSpectrometrySampleCount; + } + + public void setMassSpectrometrySampleCount(Integer massSpectrometrySampleCount) { + this.massSpectrometrySampleCount = massSpectrometrySampleCount; + } + + public String getReferenceGenome() { return referenceGenome; } + + public void setReferenceGenome(String referenceGenome) { this.referenceGenome = referenceGenome; } + + @Override + public void setReadPermission(Boolean permission) { + this.readPermission = permission; + } + + @Override + public Boolean getReadPermission() { + return readPermission; + } + + public Integer getTreatmentCount() { + return treatmentCount; + } + + public void setTreatmentCount(Integer treatmentCount) { + this.treatmentCount = treatmentCount; + } +} diff --git a/model/src/main/java/org/cbioportal/model/CancerStudyTags.java b/src/main/java/org/cbioportal/model/CancerStudyTags.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/CancerStudyTags.java rename to src/main/java/org/cbioportal/model/CancerStudyTags.java diff --git a/model/src/main/java/org/cbioportal/model/CaseListDataCount.java b/src/main/java/org/cbioportal/model/CaseListDataCount.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/CaseListDataCount.java rename to src/main/java/org/cbioportal/model/CaseListDataCount.java diff --git a/src/main/java/org/cbioportal/model/ClinicalAttribute.java b/src/main/java/org/cbioportal/model/ClinicalAttribute.java new file mode 100644 index 00000000000..ef1d10e9026 --- /dev/null +++ b/src/main/java/org/cbioportal/model/ClinicalAttribute.java @@ -0,0 +1,85 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import jakarta.validation.constraints.NotNull; + +public class ClinicalAttribute implements Serializable { + + @NotNull + private String attrId; + @NotNull + private String displayName; + private String description; + private String datatype; + @NotNull + private Boolean patientAttribute; + private String priority; + private Integer cancerStudyId; + @NotNull + private String cancerStudyIdentifier; + + public String getAttrId() { + return attrId; + } + + public void setAttrId(String attrId) { + this.attrId = attrId; + } + + public String getDisplayName() { + return displayName; + } + + public void setDisplayName(String displayName) { + this.displayName = displayName; + } + + public String getDescription() { + return description; + } + + public void setDescription(String description) { + this.description = description; + } + + public String getDatatype() { + return datatype; + } + + public void setDatatype(String datatype) { + this.datatype = datatype; + } + + public Boolean getPatientAttribute() { + return patientAttribute; + } + + public void setPatientAttribute(Boolean patientAttribute) { + this.patientAttribute = patientAttribute; + } + + public String getPriority() { + return priority; + } + + public void setPriority(String priority) { + this.priority = priority; + } + + public Integer getCancerStudyId() { + return cancerStudyId; + } + + public void setCancerStudyId(Integer cancerStudyId) { + this.cancerStudyId = cancerStudyId; + } + + public String getCancerStudyIdentifier() { + return cancerStudyIdentifier; + } + + public void setCancerStudyIdentifier(String cancerStudyIdentifier) { + this.cancerStudyIdentifier = cancerStudyIdentifier; + } + +} diff --git a/model/src/main/java/org/cbioportal/model/ClinicalAttributeCount.java b/src/main/java/org/cbioportal/model/ClinicalAttributeCount.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalAttributeCount.java rename to src/main/java/org/cbioportal/model/ClinicalAttributeCount.java diff --git a/src/main/java/org/cbioportal/model/ClinicalData.java b/src/main/java/org/cbioportal/model/ClinicalData.java new file mode 100644 index 00000000000..553a4b57899 --- /dev/null +++ b/src/main/java/org/cbioportal/model/ClinicalData.java @@ -0,0 +1,80 @@ +package org.cbioportal.model; + +import jakarta.validation.constraints.NotNull; + +public class ClinicalData extends UniqueKeyBase implements Binnable { + + private Integer internalId; + private String sampleId; + @NotNull + private String patientId; + @NotNull + private String studyId; + @NotNull + private String attrId; + private String attrValue; + private ClinicalAttribute clinicalAttribute; + + public Integer getInternalId() { + return internalId; + } + + public void setInternalId(Integer internalId) { + this.internalId = internalId; + } + + public String getSampleId() { + return sampleId; + } + + public void setSampleId(String sampleId) { + this.sampleId = sampleId; + } + + public String getPatientId() { + return patientId; + } + + public void setPatientId(String patientId) { + this.patientId = patientId; + } + + public String getStudyId() { + return studyId; + } + + public void setStudyId(String studyId) { + this.studyId = studyId; + } + + public String getAttrId() { + return attrId; + } + + public Boolean isPatientAttribute() { + if(clinicalAttribute == null) { + return null; + } + return this.clinicalAttribute.getPatientAttribute(); + } + + public void setAttrId(String attrId) { + this.attrId = attrId; + } + + public String getAttrValue() { + return attrValue; + } + + public void setAttrValue(String attrValue) { + this.attrValue = attrValue; + } + + public ClinicalAttribute getClinicalAttribute() { + return clinicalAttribute; + } + + public void setClinicalAttribute(ClinicalAttribute clinicalAttribute) { + this.clinicalAttribute = clinicalAttribute; + } +} diff --git a/model/src/main/java/org/cbioportal/model/ClinicalDataBin.java b/src/main/java/org/cbioportal/model/ClinicalDataBin.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalDataBin.java rename to src/main/java/org/cbioportal/model/ClinicalDataBin.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalDataCollection.java b/src/main/java/org/cbioportal/model/ClinicalDataCollection.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalDataCollection.java rename to src/main/java/org/cbioportal/model/ClinicalDataCollection.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalDataCount.java b/src/main/java/org/cbioportal/model/ClinicalDataCount.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalDataCount.java rename to src/main/java/org/cbioportal/model/ClinicalDataCount.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalDataCountItem.java b/src/main/java/org/cbioportal/model/ClinicalDataCountItem.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalDataCountItem.java rename to src/main/java/org/cbioportal/model/ClinicalDataCountItem.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalDataEnrichment.java b/src/main/java/org/cbioportal/model/ClinicalDataEnrichment.java similarity index 88% rename from model/src/main/java/org/cbioportal/model/ClinicalDataEnrichment.java rename to src/main/java/org/cbioportal/model/ClinicalDataEnrichment.java index 734d46fc706..10c13ac2242 100644 --- a/model/src/main/java/org/cbioportal/model/ClinicalDataEnrichment.java +++ b/src/main/java/org/cbioportal/model/ClinicalDataEnrichment.java @@ -3,7 +3,8 @@ import java.io.Serializable; import java.math.BigDecimal; -import javax.validation.constraints.NotNull; +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; public class ClinicalDataEnrichment implements Serializable { @@ -40,6 +41,7 @@ public void setMethod(String method) { this.method = method; } + @JsonProperty("pValue") public BigDecimal getpValue() { return pValue; } diff --git a/src/main/java/org/cbioportal/model/ClinicalEvent.java b/src/main/java/org/cbioportal/model/ClinicalEvent.java new file mode 100644 index 00000000000..679dfed37c3 --- /dev/null +++ b/src/main/java/org/cbioportal/model/ClinicalEvent.java @@ -0,0 +1,74 @@ +package org.cbioportal.model; + +import java.util.List; +import jakarta.validation.constraints.NotNull; + +public class ClinicalEvent extends UniqueKeyBase { + + private Integer clinicalEventId; + @NotNull + private String studyId; + @NotNull + private String patientId; + @NotNull + private String eventType; + private Integer startDate; + private Integer stopDate; + private List attributes; + + public Integer getClinicalEventId() { + return clinicalEventId; + } + + public void setClinicalEventId(Integer clinicalEventId) { + this.clinicalEventId = clinicalEventId; + } + + public String getStudyId() { + return studyId; + } + + public void setStudyId(String studyId) { + this.studyId = studyId; + } + + public String getPatientId() { + return patientId; + } + + public void setPatientId(String patientId) { + this.patientId = patientId; + } + + public String getEventType() { + return eventType; + } + + public void setEventType(String eventType) { + this.eventType = eventType; + } + + public Integer getStartDate() { + return startDate; + } + + public void setStartDate(Integer startDate) { + this.startDate = startDate; + } + + public Integer getStopDate() { + return stopDate; + } + + public void setStopDate(Integer stopDate) { + this.stopDate = stopDate; + } + + public List getAttributes() { + return attributes; + } + + public void setAttributes(List attributes) { + this.attributes = attributes; + } +} diff --git a/model/src/main/java/org/cbioportal/model/ClinicalEventData.java b/src/main/java/org/cbioportal/model/ClinicalEventData.java similarity index 93% rename from model/src/main/java/org/cbioportal/model/ClinicalEventData.java rename to src/main/java/org/cbioportal/model/ClinicalEventData.java index a6658d91a3e..6430954af39 100644 --- a/model/src/main/java/org/cbioportal/model/ClinicalEventData.java +++ b/src/main/java/org/cbioportal/model/ClinicalEventData.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class ClinicalEventData implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/ClinicalEventKeyCode.java b/src/main/java/org/cbioportal/model/ClinicalEventKeyCode.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalEventKeyCode.java rename to src/main/java/org/cbioportal/model/ClinicalEventKeyCode.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalEventSample.java b/src/main/java/org/cbioportal/model/ClinicalEventSample.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalEventSample.java rename to src/main/java/org/cbioportal/model/ClinicalEventSample.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalEventTypeCount.java b/src/main/java/org/cbioportal/model/ClinicalEventTypeCount.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalEventTypeCount.java rename to src/main/java/org/cbioportal/model/ClinicalEventTypeCount.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalViolinPlotBoxData.java b/src/main/java/org/cbioportal/model/ClinicalViolinPlotBoxData.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalViolinPlotBoxData.java rename to src/main/java/org/cbioportal/model/ClinicalViolinPlotBoxData.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalViolinPlotData.java b/src/main/java/org/cbioportal/model/ClinicalViolinPlotData.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalViolinPlotData.java rename to src/main/java/org/cbioportal/model/ClinicalViolinPlotData.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalViolinPlotIndividualPoint.java b/src/main/java/org/cbioportal/model/ClinicalViolinPlotIndividualPoint.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalViolinPlotIndividualPoint.java rename to src/main/java/org/cbioportal/model/ClinicalViolinPlotIndividualPoint.java diff --git a/model/src/main/java/org/cbioportal/model/ClinicalViolinPlotRowData.java b/src/main/java/org/cbioportal/model/ClinicalViolinPlotRowData.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ClinicalViolinPlotRowData.java rename to src/main/java/org/cbioportal/model/ClinicalViolinPlotRowData.java diff --git a/model/src/main/java/org/cbioportal/model/CoExpression.java b/src/main/java/org/cbioportal/model/CoExpression.java similarity index 89% rename from model/src/main/java/org/cbioportal/model/CoExpression.java rename to src/main/java/org/cbioportal/model/CoExpression.java index 8d5aa008b8a..22fdec80784 100644 --- a/model/src/main/java/org/cbioportal/model/CoExpression.java +++ b/src/main/java/org/cbioportal/model/CoExpression.java @@ -2,7 +2,9 @@ import java.io.Serializable; import java.math.BigDecimal; -import javax.validation.constraints.NotNull; + +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; public class CoExpression implements Serializable { @@ -39,6 +41,7 @@ public void setSpearmansCorrelation(BigDecimal spearmansCorrelation) { this.spearmansCorrelation = spearmansCorrelation; } + @JsonProperty("pValue") public BigDecimal getpValue() { return pValue; } diff --git a/model/src/main/java/org/cbioportal/model/CopyNumberCount.java b/src/main/java/org/cbioportal/model/CopyNumberCount.java similarity index 96% rename from model/src/main/java/org/cbioportal/model/CopyNumberCount.java rename to src/main/java/org/cbioportal/model/CopyNumberCount.java index ff4bcccbeee..3748da9228c 100644 --- a/model/src/main/java/org/cbioportal/model/CopyNumberCount.java +++ b/src/main/java/org/cbioportal/model/CopyNumberCount.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class CopyNumberCount implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/CopyNumberCountByGene.java b/src/main/java/org/cbioportal/model/CopyNumberCountByGene.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/CopyNumberCountByGene.java rename to src/main/java/org/cbioportal/model/CopyNumberCountByGene.java diff --git a/model/src/main/java/org/cbioportal/model/CopyNumberSeg.java b/src/main/java/org/cbioportal/model/CopyNumberSeg.java similarity index 98% rename from model/src/main/java/org/cbioportal/model/CopyNumberSeg.java rename to src/main/java/org/cbioportal/model/CopyNumberSeg.java index f9519fe48ea..ea304052666 100644 --- a/model/src/main/java/org/cbioportal/model/CopyNumberSeg.java +++ b/src/main/java/org/cbioportal/model/CopyNumberSeg.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.math.BigDecimal; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class CopyNumberSeg extends UniqueKeyBase { diff --git a/model/src/main/java/org/cbioportal/model/CosmicMutation.java b/src/main/java/org/cbioportal/model/CosmicMutation.java similarity index 95% rename from model/src/main/java/org/cbioportal/model/CosmicMutation.java rename to src/main/java/org/cbioportal/model/CosmicMutation.java index 07151b75a60..2656205c146 100644 --- a/model/src/main/java/org/cbioportal/model/CosmicMutation.java +++ b/src/main/java/org/cbioportal/model/CosmicMutation.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class CosmicMutation implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/CountSummary.java b/src/main/java/org/cbioportal/model/CountSummary.java similarity index 94% rename from model/src/main/java/org/cbioportal/model/CountSummary.java rename to src/main/java/org/cbioportal/model/CountSummary.java index 44d8e342c21..3466117a2ba 100644 --- a/model/src/main/java/org/cbioportal/model/CountSummary.java +++ b/src/main/java/org/cbioportal/model/CountSummary.java @@ -2,7 +2,7 @@ import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; /** * diff --git a/model/src/main/java/org/cbioportal/model/CustomDriverAnnotationReport.java b/src/main/java/org/cbioportal/model/CustomDriverAnnotationReport.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/CustomDriverAnnotationReport.java rename to src/main/java/org/cbioportal/model/CustomDriverAnnotationReport.java diff --git a/model/src/main/java/org/cbioportal/model/DataAccessToken.java b/src/main/java/org/cbioportal/model/DataAccessToken.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/DataAccessToken.java rename to src/main/java/org/cbioportal/model/DataAccessToken.java diff --git a/model/src/main/java/org/cbioportal/model/DataBin.java b/src/main/java/org/cbioportal/model/DataBin.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/DataBin.java rename to src/main/java/org/cbioportal/model/DataBin.java diff --git a/model/src/main/java/org/cbioportal/model/DensityPlotBin.java b/src/main/java/org/cbioportal/model/DensityPlotBin.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/DensityPlotBin.java rename to src/main/java/org/cbioportal/model/DensityPlotBin.java diff --git a/model/src/main/java/org/cbioportal/model/DensityPlotData.java b/src/main/java/org/cbioportal/model/DensityPlotData.java similarity index 94% rename from model/src/main/java/org/cbioportal/model/DensityPlotData.java rename to src/main/java/org/cbioportal/model/DensityPlotData.java index c5df3dd0beb..06adc10bca5 100644 --- a/model/src/main/java/org/cbioportal/model/DensityPlotData.java +++ b/src/main/java/org/cbioportal/model/DensityPlotData.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import java.io.Serializable; import java.math.BigDecimal; import java.util.ArrayList; diff --git a/src/main/java/org/cbioportal/model/DiscreteCopyNumberData.java b/src/main/java/org/cbioportal/model/DiscreteCopyNumberData.java new file mode 100644 index 00000000000..11c20fe6068 --- /dev/null +++ b/src/main/java/org/cbioportal/model/DiscreteCopyNumberData.java @@ -0,0 +1,34 @@ +package org.cbioportal.model; + +import com.fasterxml.jackson.annotation.JsonRawValue; + +import java.io.Serializable; + +import io.swagger.v3.oas.annotations.media.Schema; +import jakarta.validation.constraints.NotNull; + +public class DiscreteCopyNumberData extends Alteration implements Serializable { + @NotNull + private Integer alteration; + + @JsonRawValue + @Schema(type = "java.util.Map") + private Object annotationJson; + + public Integer getAlteration() { + return alteration; + } + + public void setAlteration(Integer alteration) { + this.alteration = alteration; + } + + public Object getAnnotationJson() { + return annotationJson; + } + + public void setAnnotationJson(String annotationJson) { + this.annotationJson = annotationJson; + } + +} diff --git a/model/src/main/java/org/cbioportal/model/EnrichmentType.java b/src/main/java/org/cbioportal/model/EnrichmentType.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/EnrichmentType.java rename to src/main/java/org/cbioportal/model/EnrichmentType.java diff --git a/model/src/main/java/org/cbioportal/model/EntityType.java b/src/main/java/org/cbioportal/model/EntityType.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/EntityType.java rename to src/main/java/org/cbioportal/model/EntityType.java diff --git a/model/src/main/java/org/cbioportal/model/ExpressionEnrichment.java b/src/main/java/org/cbioportal/model/ExpressionEnrichment.java similarity index 77% rename from model/src/main/java/org/cbioportal/model/ExpressionEnrichment.java rename to src/main/java/org/cbioportal/model/ExpressionEnrichment.java index 57e6df2a5db..c6c562c4b64 100644 --- a/model/src/main/java/org/cbioportal/model/ExpressionEnrichment.java +++ b/src/main/java/org/cbioportal/model/ExpressionEnrichment.java @@ -4,7 +4,8 @@ import java.math.BigDecimal; import java.util.List; -import javax.validation.constraints.NotNull; +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; public class ExpressionEnrichment implements Serializable { @@ -21,7 +22,8 @@ public void setGroupsStatistics(List groupsStatistics) { this.groupsStatistics = groupsStatistics; } - public BigDecimal getpValue() { + @JsonProperty("pValue") + public BigDecimal getpValue() { return pValue; } diff --git a/model/src/main/java/org/cbioportal/model/FractionGenomeAltered.java b/src/main/java/org/cbioportal/model/FractionGenomeAltered.java similarity index 95% rename from model/src/main/java/org/cbioportal/model/FractionGenomeAltered.java rename to src/main/java/org/cbioportal/model/FractionGenomeAltered.java index 3f88552d893..f9e3d67fcdb 100644 --- a/model/src/main/java/org/cbioportal/model/FractionGenomeAltered.java +++ b/src/main/java/org/cbioportal/model/FractionGenomeAltered.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.math.BigDecimal; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class FractionGenomeAltered extends UniqueKeyBase { diff --git a/src/main/java/org/cbioportal/model/Gene.java b/src/main/java/org/cbioportal/model/Gene.java new file mode 100644 index 00000000000..a2325da6856 --- /dev/null +++ b/src/main/java/org/cbioportal/model/Gene.java @@ -0,0 +1,43 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import jakarta.validation.constraints.NotNull; + +public class Gene implements Serializable { + + @NotNull + private Integer geneticEntityId; + @NotNull + private Integer entrezGeneId; + @NotNull + private String hugoGeneSymbol; + private String type; + + public Integer getGeneticEntityId() { return geneticEntityId; } + + public void setGeneticEntityId(Integer geneticEntityId) { this.geneticEntityId = geneticEntityId; } + + public Integer getEntrezGeneId() { + return entrezGeneId; + } + + public void setEntrezGeneId(Integer entrezGeneId) { + this.entrezGeneId = entrezGeneId; + } + + public String getHugoGeneSymbol() { + return hugoGeneSymbol; + } + + public void setHugoGeneSymbol(String hugoGeneSymbol) { + this.hugoGeneSymbol = hugoGeneSymbol; + } + + public String getType() { + return type; + } + + public void setType(String type) { + this.type = type; + } +} diff --git a/model/src/main/java/org/cbioportal/model/GeneAlias.java b/src/main/java/org/cbioportal/model/GeneAlias.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GeneAlias.java rename to src/main/java/org/cbioportal/model/GeneAlias.java diff --git a/model/src/main/java/org/cbioportal/model/GeneFilter.java b/src/main/java/org/cbioportal/model/GeneFilter.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GeneFilter.java rename to src/main/java/org/cbioportal/model/GeneFilter.java diff --git a/model/src/main/java/org/cbioportal/model/GeneFilterQuery.java b/src/main/java/org/cbioportal/model/GeneFilterQuery.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GeneFilterQuery.java rename to src/main/java/org/cbioportal/model/GeneFilterQuery.java diff --git a/model/src/main/java/org/cbioportal/model/GeneMolecularAlteration.java b/src/main/java/org/cbioportal/model/GeneMolecularAlteration.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GeneMolecularAlteration.java rename to src/main/java/org/cbioportal/model/GeneMolecularAlteration.java diff --git a/model/src/main/java/org/cbioportal/model/GeneMolecularData.java b/src/main/java/org/cbioportal/model/GeneMolecularData.java similarity index 92% rename from model/src/main/java/org/cbioportal/model/GeneMolecularData.java rename to src/main/java/org/cbioportal/model/GeneMolecularData.java index 52dcea07b55..6ce9e1cef68 100644 --- a/model/src/main/java/org/cbioportal/model/GeneMolecularData.java +++ b/src/main/java/org/cbioportal/model/GeneMolecularData.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class GeneMolecularData extends MolecularData implements Serializable { diff --git a/src/main/java/org/cbioportal/model/GenePanel.java b/src/main/java/org/cbioportal/model/GenePanel.java new file mode 100644 index 00000000000..6c47f89016d --- /dev/null +++ b/src/main/java/org/cbioportal/model/GenePanel.java @@ -0,0 +1,46 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import java.util.List; +import jakarta.validation.constraints.NotNull; + +public class GenePanel implements Serializable { + + private Integer internalId; + @NotNull + private String stableId; + private String description; + private List genes; + + public Integer getInternalId() { + return internalId; + } + + public void setInternalId(Integer internalId) { + this.internalId = internalId; + } + + public String getStableId() { + return stableId; + } + + public void setStableId(String stableId) { + this.stableId = stableId; + } + + public String getDescription() { + return description; + } + + public void setDescription(String description) { + this.description = description; + } + + public List getGenes() { + return genes; + } + + public void setGenes(List genes) { + this.genes = genes; + } +} diff --git a/model/src/main/java/org/cbioportal/model/GenePanelData.java b/src/main/java/org/cbioportal/model/GenePanelData.java similarity index 96% rename from model/src/main/java/org/cbioportal/model/GenePanelData.java rename to src/main/java/org/cbioportal/model/GenePanelData.java index 1529d09f762..ac1bfbf78b4 100644 --- a/model/src/main/java/org/cbioportal/model/GenePanelData.java +++ b/src/main/java/org/cbioportal/model/GenePanelData.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class GenePanelData extends UniqueKeyBase { diff --git a/model/src/main/java/org/cbioportal/model/GenePanelToGene.java b/src/main/java/org/cbioportal/model/GenePanelToGene.java similarity index 94% rename from model/src/main/java/org/cbioportal/model/GenePanelToGene.java rename to src/main/java/org/cbioportal/model/GenePanelToGene.java index bf6d80e9c9c..b09698966f3 100644 --- a/model/src/main/java/org/cbioportal/model/GenePanelToGene.java +++ b/src/main/java/org/cbioportal/model/GenePanelToGene.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class GenePanelToGene implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayAdditionalProperty.java b/src/main/java/org/cbioportal/model/GenericAssayAdditionalProperty.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenericAssayAdditionalProperty.java rename to src/main/java/org/cbioportal/model/GenericAssayAdditionalProperty.java diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayBinaryEnrichment.java b/src/main/java/org/cbioportal/model/GenericAssayBinaryEnrichment.java similarity index 89% rename from model/src/main/java/org/cbioportal/model/GenericAssayBinaryEnrichment.java rename to src/main/java/org/cbioportal/model/GenericAssayBinaryEnrichment.java index f7ccbc7c3b5..24e84145227 100644 --- a/model/src/main/java/org/cbioportal/model/GenericAssayBinaryEnrichment.java +++ b/src/main/java/org/cbioportal/model/GenericAssayBinaryEnrichment.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import java.math.BigDecimal; import java.util.List; diff --git a/src/main/java/org/cbioportal/model/GenericAssayCategoricalEnrichment.java b/src/main/java/org/cbioportal/model/GenericAssayCategoricalEnrichment.java new file mode 100644 index 00000000000..afc72993136 --- /dev/null +++ b/src/main/java/org/cbioportal/model/GenericAssayCategoricalEnrichment.java @@ -0,0 +1,20 @@ +package org.cbioportal.model; + +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; +import java.math.BigDecimal; + +public class GenericAssayCategoricalEnrichment extends GenericAssayEnrichment { + @NotNull + private BigDecimal qValue; + + @JsonProperty("qValue") + public BigDecimal getqValue() { + return qValue; + } + + public void setqValue(BigDecimal qValue) { + this.qValue = qValue; + } + +} diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayCountSummary.java b/src/main/java/org/cbioportal/model/GenericAssayCountSummary.java similarity index 93% rename from model/src/main/java/org/cbioportal/model/GenericAssayCountSummary.java rename to src/main/java/org/cbioportal/model/GenericAssayCountSummary.java index 2f24ed760ba..49edb224e4a 100644 --- a/model/src/main/java/org/cbioportal/model/GenericAssayCountSummary.java +++ b/src/main/java/org/cbioportal/model/GenericAssayCountSummary.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import java.io.Serializable; public class GenericAssayCountSummary implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayData.java b/src/main/java/org/cbioportal/model/GenericAssayData.java similarity index 93% rename from model/src/main/java/org/cbioportal/model/GenericAssayData.java rename to src/main/java/org/cbioportal/model/GenericAssayData.java index 85a262219bc..3fd08f55e77 100644 --- a/model/src/main/java/org/cbioportal/model/GenericAssayData.java +++ b/src/main/java/org/cbioportal/model/GenericAssayData.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class GenericAssayData extends MolecularData implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayDataBin.java b/src/main/java/org/cbioportal/model/GenericAssayDataBin.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenericAssayDataBin.java rename to src/main/java/org/cbioportal/model/GenericAssayDataBin.java diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayDataCount.java b/src/main/java/org/cbioportal/model/GenericAssayDataCount.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenericAssayDataCount.java rename to src/main/java/org/cbioportal/model/GenericAssayDataCount.java diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayDataCountItem.java b/src/main/java/org/cbioportal/model/GenericAssayDataCountItem.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenericAssayDataCountItem.java rename to src/main/java/org/cbioportal/model/GenericAssayDataCountItem.java diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayEnrichment.java b/src/main/java/org/cbioportal/model/GenericAssayEnrichment.java similarity index 90% rename from model/src/main/java/org/cbioportal/model/GenericAssayEnrichment.java rename to src/main/java/org/cbioportal/model/GenericAssayEnrichment.java index 02491c2221b..9116783494a 100644 --- a/model/src/main/java/org/cbioportal/model/GenericAssayEnrichment.java +++ b/src/main/java/org/cbioportal/model/GenericAssayEnrichment.java @@ -4,7 +4,8 @@ import java.math.BigDecimal; import java.util.HashMap; -import javax.validation.constraints.NotNull; +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; public class GenericAssayEnrichment extends ExpressionEnrichment implements Serializable { @@ -40,7 +41,8 @@ public HashMap getGenericEntityMetaProperties() { public void setGenericEntityMetaProperties(HashMap genericEntityMetaProperties) { this.genericEntityMetaProperties = genericEntityMetaProperties; } - + + @JsonProperty("qValue") public BigDecimal getqValue() { return qValue; } diff --git a/model/src/main/java/org/cbioportal/model/GenericAssayMolecularAlteration.java b/src/main/java/org/cbioportal/model/GenericAssayMolecularAlteration.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenericAssayMolecularAlteration.java rename to src/main/java/org/cbioportal/model/GenericAssayMolecularAlteration.java diff --git a/model/src/main/java/org/cbioportal/model/GenericEntityProperty.java b/src/main/java/org/cbioportal/model/GenericEntityProperty.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenericEntityProperty.java rename to src/main/java/org/cbioportal/model/GenericEntityProperty.java diff --git a/model/src/main/java/org/cbioportal/model/Geneset.java b/src/main/java/org/cbioportal/model/Geneset.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/Geneset.java rename to src/main/java/org/cbioportal/model/Geneset.java diff --git a/model/src/main/java/org/cbioportal/model/GenesetCorrelation.java b/src/main/java/org/cbioportal/model/GenesetCorrelation.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenesetCorrelation.java rename to src/main/java/org/cbioportal/model/GenesetCorrelation.java diff --git a/model/src/main/java/org/cbioportal/model/GenesetHierarchyInfo.java b/src/main/java/org/cbioportal/model/GenesetHierarchyInfo.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenesetHierarchyInfo.java rename to src/main/java/org/cbioportal/model/GenesetHierarchyInfo.java diff --git a/model/src/main/java/org/cbioportal/model/GenesetMolecularAlteration.java b/src/main/java/org/cbioportal/model/GenesetMolecularAlteration.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenesetMolecularAlteration.java rename to src/main/java/org/cbioportal/model/GenesetMolecularAlteration.java diff --git a/model/src/main/java/org/cbioportal/model/GenesetMolecularData.java b/src/main/java/org/cbioportal/model/GenesetMolecularData.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenesetMolecularData.java rename to src/main/java/org/cbioportal/model/GenesetMolecularData.java diff --git a/model/src/main/java/org/cbioportal/model/GeneticEntity.java b/src/main/java/org/cbioportal/model/GeneticEntity.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GeneticEntity.java rename to src/main/java/org/cbioportal/model/GeneticEntity.java diff --git a/model/src/main/java/org/cbioportal/model/GenomicDataBin.java b/src/main/java/org/cbioportal/model/GenomicDataBin.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenomicDataBin.java rename to src/main/java/org/cbioportal/model/GenomicDataBin.java diff --git a/model/src/main/java/org/cbioportal/model/GenomicDataCount.java b/src/main/java/org/cbioportal/model/GenomicDataCount.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenomicDataCount.java rename to src/main/java/org/cbioportal/model/GenomicDataCount.java diff --git a/model/src/main/java/org/cbioportal/model/GenomicDataCountItem.java b/src/main/java/org/cbioportal/model/GenomicDataCountItem.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/GenomicDataCountItem.java rename to src/main/java/org/cbioportal/model/GenomicDataCountItem.java diff --git a/model/src/main/java/org/cbioportal/model/GenomicEnrichment.java b/src/main/java/org/cbioportal/model/GenomicEnrichment.java similarity index 93% rename from model/src/main/java/org/cbioportal/model/GenomicEnrichment.java rename to src/main/java/org/cbioportal/model/GenomicEnrichment.java index 16a63c6a7ea..a4442cf1cf1 100644 --- a/model/src/main/java/org/cbioportal/model/GenomicEnrichment.java +++ b/src/main/java/org/cbioportal/model/GenomicEnrichment.java @@ -2,7 +2,7 @@ import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class GenomicEnrichment extends ExpressionEnrichment implements Serializable { diff --git a/src/main/java/org/cbioportal/model/Gistic.java b/src/main/java/org/cbioportal/model/Gistic.java new file mode 100644 index 00000000000..66a8646e2d3 --- /dev/null +++ b/src/main/java/org/cbioportal/model/Gistic.java @@ -0,0 +1,100 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import java.math.BigDecimal; +import java.util.List; + +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; + +public class Gistic implements Serializable { + + private Long gisticRoiId; + @NotNull + private String cancerStudyId; + @NotNull + private Integer chromosome; + @NotNull + private String cytoband; + @NotNull + private Integer widePeakStart; + @NotNull + private Integer widePeakEnd; + @NotNull + private BigDecimal qValue; + @NotNull + private Boolean amp; + private List genes; + + public Long getGisticRoiId() { + return gisticRoiId; + } + + public void setGisticRoiId(Long gisticRoiId) { + this.gisticRoiId = gisticRoiId; + } + + public String getCancerStudyId() { + return cancerStudyId; + } + + public void setCancerStudyId(String cancerStudyId) { + this.cancerStudyId = cancerStudyId; + } + + public Integer getChromosome() { + return chromosome; + } + + public void setChromosome(Integer chromosome) { + this.chromosome = chromosome; + } + + public String getCytoband() { + return cytoband; + } + + public void setCytoband(String cytoband) { + this.cytoband = cytoband; + } + + public Integer getWidePeakStart() { + return widePeakStart; + } + + public void setWidePeakStart(Integer widePeakStart) { + this.widePeakStart = widePeakStart; + } + + public Integer getWidePeakEnd() { + return widePeakEnd; + } + + public void setWidePeakEnd(Integer widePeakEnd) { + this.widePeakEnd = widePeakEnd; + } + @JsonProperty("qValue") + public BigDecimal getqValue() { + return qValue; + } + + public void setqValue(BigDecimal qValue) { + this.qValue = qValue; + } + + public Boolean getAmp() { + return amp; + } + + public void setAmp(Boolean amp) { + this.amp = amp; + } + + public List getGenes() { + return genes; + } + + public void setGenes(List genes) { + this.genes = genes; + } +} \ No newline at end of file diff --git a/model/src/main/java/org/cbioportal/model/GisticToGene.java b/src/main/java/org/cbioportal/model/GisticToGene.java similarity index 94% rename from model/src/main/java/org/cbioportal/model/GisticToGene.java rename to src/main/java/org/cbioportal/model/GisticToGene.java index b030f83c631..49593eedaf9 100644 --- a/model/src/main/java/org/cbioportal/model/GisticToGene.java +++ b/src/main/java/org/cbioportal/model/GisticToGene.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class GisticToGene implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/GroupStatistics.java b/src/main/java/org/cbioportal/model/GroupStatistics.java similarity index 94% rename from model/src/main/java/org/cbioportal/model/GroupStatistics.java rename to src/main/java/org/cbioportal/model/GroupStatistics.java index ce5222c9633..df0950caf02 100644 --- a/model/src/main/java/org/cbioportal/model/GroupStatistics.java +++ b/src/main/java/org/cbioportal/model/GroupStatistics.java @@ -3,7 +3,7 @@ import java.io.Serializable; import java.math.BigDecimal; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class GroupStatistics implements Serializable{ diff --git a/model/src/main/java/org/cbioportal/model/Info.java b/src/main/java/org/cbioportal/model/Info.java similarity index 98% rename from model/src/main/java/org/cbioportal/model/Info.java rename to src/main/java/org/cbioportal/model/Info.java index cfad9b4e095..beee09b26d7 100644 --- a/model/src/main/java/org/cbioportal/model/Info.java +++ b/src/main/java/org/cbioportal/model/Info.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class Info implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/MolecularAlteration.java b/src/main/java/org/cbioportal/model/MolecularAlteration.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/MolecularAlteration.java rename to src/main/java/org/cbioportal/model/MolecularAlteration.java diff --git a/model/src/main/java/org/cbioportal/model/MolecularData.java b/src/main/java/org/cbioportal/model/MolecularData.java similarity index 96% rename from model/src/main/java/org/cbioportal/model/MolecularData.java rename to src/main/java/org/cbioportal/model/MolecularData.java index d91164e9da8..260f20d9e34 100644 --- a/model/src/main/java/org/cbioportal/model/MolecularData.java +++ b/src/main/java/org/cbioportal/model/MolecularData.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public abstract class MolecularData extends UniqueKeyBase { diff --git a/model/src/main/java/org/cbioportal/model/MolecularProfile.java b/src/main/java/org/cbioportal/model/MolecularProfile.java similarity index 98% rename from model/src/main/java/org/cbioportal/model/MolecularProfile.java rename to src/main/java/org/cbioportal/model/MolecularProfile.java index 3fc68a66f5a..da172984a56 100644 --- a/model/src/main/java/org/cbioportal/model/MolecularProfile.java +++ b/src/main/java/org/cbioportal/model/MolecularProfile.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class MolecularProfile implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/MolecularProfileCaseIdentifier.java b/src/main/java/org/cbioportal/model/MolecularProfileCaseIdentifier.java similarity index 97% rename from model/src/main/java/org/cbioportal/model/MolecularProfileCaseIdentifier.java rename to src/main/java/org/cbioportal/model/MolecularProfileCaseIdentifier.java index c67e3c70979..743fee3cb0d 100644 --- a/model/src/main/java/org/cbioportal/model/MolecularProfileCaseIdentifier.java +++ b/src/main/java/org/cbioportal/model/MolecularProfileCaseIdentifier.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import java.io.Serializable; public class MolecularProfileCaseIdentifier implements Serializable, Comparable { diff --git a/model/src/main/java/org/cbioportal/model/MolecularProfileSamples.java b/src/main/java/org/cbioportal/model/MolecularProfileSamples.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/MolecularProfileSamples.java rename to src/main/java/org/cbioportal/model/MolecularProfileSamples.java diff --git a/model/src/main/java/org/cbioportal/model/MrnaPercentile.java b/src/main/java/org/cbioportal/model/MrnaPercentile.java similarity index 92% rename from model/src/main/java/org/cbioportal/model/MrnaPercentile.java rename to src/main/java/org/cbioportal/model/MrnaPercentile.java index 3fdfe9b7d60..278e65eb61b 100644 --- a/model/src/main/java/org/cbioportal/model/MrnaPercentile.java +++ b/src/main/java/org/cbioportal/model/MrnaPercentile.java @@ -1,7 +1,9 @@ package org.cbioportal.model; import java.math.BigDecimal; -import javax.validation.constraints.NotNull; + +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; public class MrnaPercentile extends UniqueKeyBase { @@ -68,6 +70,7 @@ public void setPercentile(BigDecimal percentile) { this.percentile = percentile; } + @JsonProperty("zScore") public BigDecimal getzScore() { return zScore; } diff --git a/src/main/java/org/cbioportal/model/MutSig.java b/src/main/java/org/cbioportal/model/MutSig.java new file mode 100644 index 00000000000..1d60c06e801 --- /dev/null +++ b/src/main/java/org/cbioportal/model/MutSig.java @@ -0,0 +1,101 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import java.math.BigDecimal; + +import com.fasterxml.jackson.annotation.JsonProperty; +import jakarta.validation.constraints.NotNull; + +public class MutSig implements Serializable { + + private Integer cancerStudyId; + @NotNull + private String cancerStudyIdentifier; + @NotNull + private Integer entrezGeneId; + @NotNull + private String hugoGeneSymbol; + @NotNull + private Integer rank; + private Integer numbasescovered; + @NotNull + private Integer nummutations; + @NotNull + private BigDecimal pValue; + @NotNull + private BigDecimal qValue; + + public Integer getCancerStudyId() { + return cancerStudyId; + } + + public void setCancerStudyId(Integer cancerStudyId) { + this.cancerStudyId = cancerStudyId; + } + + public String getCancerStudyIdentifier() { + return cancerStudyIdentifier; + } + + public void setCancerStudyIdentifier(String cancerStudyIdentifier) { + this.cancerStudyIdentifier = cancerStudyIdentifier; + } + + public Integer getEntrezGeneId() { + return entrezGeneId; + } + + public void setEntrezGeneId(Integer entrezGeneId) { + this.entrezGeneId = entrezGeneId; + } + + public String getHugoGeneSymbol() { + return hugoGeneSymbol; + } + + public void setHugoGeneSymbol(String hugoGeneSymbol) { + this.hugoGeneSymbol = hugoGeneSymbol; + } + + public Integer getRank() { + return rank; + } + + public void setRank(Integer rank) { + this.rank = rank; + } + + public Integer getNumbasescovered() { + return numbasescovered; + } + + public void setNumbasescovered(Integer numbasescovered) { + this.numbasescovered = numbasescovered; + } + + public Integer getNummutations() { + return nummutations; + } + + public void setNummutations(Integer nummutations) { + this.nummutations = nummutations; + } + + @JsonProperty("pValue") + public BigDecimal getpValue() { + return pValue; + } + + public void setpValue(BigDecimal pValue) { + this.pValue = pValue; + } + + @JsonProperty("qValue") + public BigDecimal getqValue() { + return qValue; + } + + public void setqValue(BigDecimal qValue) { + this.qValue = qValue; + } +} \ No newline at end of file diff --git a/model/src/main/java/org/cbioportal/model/Mutation.java b/src/main/java/org/cbioportal/model/Mutation.java similarity index 96% rename from model/src/main/java/org/cbioportal/model/Mutation.java rename to src/main/java/org/cbioportal/model/Mutation.java index 62fc787e288..3ddae915587 100644 --- a/model/src/main/java/org/cbioportal/model/Mutation.java +++ b/src/main/java/org/cbioportal/model/Mutation.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import com.fasterxml.jackson.annotation.JsonRawValue; -import io.swagger.annotations.ApiModelProperty; +import io.swagger.v3.oas.annotations.media.Schema; import java.io.Serializable; import java.math.BigDecimal; @@ -31,8 +31,8 @@ public class Mutation extends Alteration implements Serializable { private String keyword; private AlleleSpecificCopyNumber alleleSpecificCopyNumber; @JsonRawValue - @ApiModelProperty(dataType = "java.util.Map") - private String annotationJSON; + @Schema(type = "java.util.Map") + private Object annotationJSON; public String getCenter() { return center; @@ -205,7 +205,7 @@ public void setAlleleSpecificCopyNumber(AlleleSpecificCopyNumber alleleSpecificC this.alleleSpecificCopyNumber = alleleSpecificCopyNumber; } - public String getAnnotationJSON() { + public Object getAnnotationJSON() { return annotationJSON; } diff --git a/model/src/main/java/org/cbioportal/model/MutationCountByGene.java b/src/main/java/org/cbioportal/model/MutationCountByGene.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/MutationCountByGene.java rename to src/main/java/org/cbioportal/model/MutationCountByGene.java diff --git a/model/src/main/java/org/cbioportal/model/MutationCountByPosition.java b/src/main/java/org/cbioportal/model/MutationCountByPosition.java similarity index 95% rename from model/src/main/java/org/cbioportal/model/MutationCountByPosition.java rename to src/main/java/org/cbioportal/model/MutationCountByPosition.java index b7dde3cc841..f92b2fb1d17 100644 --- a/model/src/main/java/org/cbioportal/model/MutationCountByPosition.java +++ b/src/main/java/org/cbioportal/model/MutationCountByPosition.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class MutationCountByPosition implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/MutationEventType.java b/src/main/java/org/cbioportal/model/MutationEventType.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/MutationEventType.java rename to src/main/java/org/cbioportal/model/MutationEventType.java diff --git a/model/src/main/java/org/cbioportal/model/MutationSpectrum.java b/src/main/java/org/cbioportal/model/MutationSpectrum.java similarity index 97% rename from model/src/main/java/org/cbioportal/model/MutationSpectrum.java rename to src/main/java/org/cbioportal/model/MutationSpectrum.java index 9843e942be5..f130728b86d 100644 --- a/model/src/main/java/org/cbioportal/model/MutationSpectrum.java +++ b/src/main/java/org/cbioportal/model/MutationSpectrum.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class MutationSpectrum extends UniqueKeyBase { diff --git a/model/src/main/java/org/cbioportal/model/NumericGeneMolecularData.java b/src/main/java/org/cbioportal/model/NumericGeneMolecularData.java similarity index 97% rename from model/src/main/java/org/cbioportal/model/NumericGeneMolecularData.java rename to src/main/java/org/cbioportal/model/NumericGeneMolecularData.java index 5f8d9339f16..3e519807477 100644 --- a/model/src/main/java/org/cbioportal/model/NumericGeneMolecularData.java +++ b/src/main/java/org/cbioportal/model/NumericGeneMolecularData.java @@ -2,7 +2,7 @@ import java.math.BigDecimal; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class NumericGeneMolecularData extends UniqueKeyBase { diff --git a/src/main/java/org/cbioportal/model/Patient.java b/src/main/java/org/cbioportal/model/Patient.java new file mode 100644 index 00000000000..4d2a2f1d9a6 --- /dev/null +++ b/src/main/java/org/cbioportal/model/Patient.java @@ -0,0 +1,54 @@ +package org.cbioportal.model; + +import jakarta.validation.constraints.NotNull; + +public class Patient extends UniqueKeyBase { + + private Integer internalId; + @NotNull + private String stableId; + private Integer cancerStudyId; + @NotNull + private String cancerStudyIdentifier; + private CancerStudy cancerStudy; + + public Integer getInternalId() { + return internalId; + } + + public void setInternalId(Integer internalId) { + this.internalId = internalId; + } + + public String getStableId() { + return stableId; + } + + public void setStableId(String stableId) { + this.stableId = stableId; + } + + public Integer getCancerStudyId() { + return cancerStudyId; + } + + public void setCancerStudyId(Integer cancerStudyId) { + this.cancerStudyId = cancerStudyId; + } + + public String getCancerStudyIdentifier() { + return cancerStudyIdentifier; + } + + public void setCancerStudyIdentifier(String cancerStudyIdentifier) { + this.cancerStudyIdentifier = cancerStudyIdentifier; + } + + public CancerStudy getCancerStudy() { + return cancerStudy; + } + + public void setCancerStudy(CancerStudy cancerStudy) { + this.cancerStudy = cancerStudy; + } +} \ No newline at end of file diff --git a/model/src/main/java/org/cbioportal/model/PatientTreatmentRow.java b/src/main/java/org/cbioportal/model/PatientTreatmentRow.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/PatientTreatmentRow.java rename to src/main/java/org/cbioportal/model/PatientTreatmentRow.java diff --git a/model/src/main/java/org/cbioportal/model/QueryElement.java b/src/main/java/org/cbioportal/model/QueryElement.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/QueryElement.java rename to src/main/java/org/cbioportal/model/QueryElement.java diff --git a/model/src/main/java/org/cbioportal/model/ReadPermission.java b/src/main/java/org/cbioportal/model/ReadPermission.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ReadPermission.java rename to src/main/java/org/cbioportal/model/ReadPermission.java diff --git a/model/src/main/java/org/cbioportal/model/ReferenceGenome.java b/src/main/java/org/cbioportal/model/ReferenceGenome.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ReferenceGenome.java rename to src/main/java/org/cbioportal/model/ReferenceGenome.java diff --git a/src/main/java/org/cbioportal/model/ReferenceGenomeGene.java b/src/main/java/org/cbioportal/model/ReferenceGenomeGene.java new file mode 100644 index 00000000000..34ff3d82c9f --- /dev/null +++ b/src/main/java/org/cbioportal/model/ReferenceGenomeGene.java @@ -0,0 +1,81 @@ +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.cbioportal.model; + +import java.io.Serializable; +import java.net.Inet4Address; +import jakarta.validation.constraints.NotNull; + +/** + * Class to wrap Reference Genome Gene. + * @author Kelsey Zhu + */ +public class ReferenceGenomeGene implements Serializable { + @NotNull + private Integer referenceGenomeId; + @NotNull + private Integer entrezGeneId; + private String hugoGeneSymbol; + private String chromosome; + private String cytoband; + private Long start; + private Long end; + + public void setReferenceGenomeId(Integer referenceGenomeId) { this.referenceGenomeId = referenceGenomeId; } + + public Integer getReferenceGenomeId() { + return referenceGenomeId; + } + + public Integer getEntrezGeneId() { return entrezGeneId; } + + public void setEntrezGeneId(Integer entrezGeneId) { this.entrezGeneId = entrezGeneId; } + + public String getHugoGeneSymbol() { + return hugoGeneSymbol; + } + + public void setHugoGeneSymbol(String hugoGeneSymbol) { + this.hugoGeneSymbol = hugoGeneSymbol; + } + + public String getChromosome() { + return chromosome; + } + + public void setChromosome(String chromosome) { + this.chromosome = chromosome; + } + + public String getCytoband() { + return cytoband; + } + + public void setCytoband(String cytoband) { + this.cytoband = cytoband; + } + + public Long getStart() { return this.start; } + + public void setStart(Long start) { this.start = start; } + + public Long getEnd() { return this.end; } + + public void setEnd(Long end) { this.end = end; } + +} diff --git a/model/src/main/java/org/cbioportal/model/ResourceData.java b/src/main/java/org/cbioportal/model/ResourceData.java similarity index 96% rename from model/src/main/java/org/cbioportal/model/ResourceData.java rename to src/main/java/org/cbioportal/model/ResourceData.java index a1de2182599..243b86af47c 100644 --- a/model/src/main/java/org/cbioportal/model/ResourceData.java +++ b/src/main/java/org/cbioportal/model/ResourceData.java @@ -2,7 +2,7 @@ import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class ResourceData extends UniqueKeyBase implements Serializable { diff --git a/src/main/java/org/cbioportal/model/ResourceDefinition.java b/src/main/java/org/cbioportal/model/ResourceDefinition.java new file mode 100644 index 00000000000..73eacd6f287 --- /dev/null +++ b/src/main/java/org/cbioportal/model/ResourceDefinition.java @@ -0,0 +1,76 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import jakarta.validation.constraints.NotNull; + +public class ResourceDefinition implements Serializable { + + @NotNull + private String resourceId; + @NotNull + private String displayName; + private String description; + @NotNull + private ResourceType resourceType; + private String priority; + private Boolean openByDefault; + @NotNull + private String cancerStudyIdentifier; + + public String getResourceId() { + return resourceId; + } + + public void setResourceId(String resourceId) { + this.resourceId = resourceId; + } + + public String getDisplayName() { + return displayName; + } + + public void setDisplayName(String displayName) { + this.displayName = displayName; + } + + public String getDescription() { + return description; + } + + public void setDescription(String description) { + this.description = description; + } + + public ResourceType getResourceType() { + return resourceType; + } + + public void setResourceType(ResourceType resourceType) { + this.resourceType = resourceType; + } + + public String getPriority() { + return priority; + } + + public void setPriority(String priority) { + this.priority = priority; + } + + public Boolean getOpenByDefault() { + return openByDefault; + } + + public void setOpenByDefault(Boolean openByDefault) { + this.openByDefault = openByDefault; + } + + public String getCancerStudyIdentifier() { + return cancerStudyIdentifier; + } + + public void setCancerStudyIdentifier(String cancerStudyIdentifier) { + this.cancerStudyIdentifier = cancerStudyIdentifier; + } + +} diff --git a/model/src/main/java/org/cbioportal/model/ResourceType.java b/src/main/java/org/cbioportal/model/ResourceType.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/ResourceType.java rename to src/main/java/org/cbioportal/model/ResourceType.java diff --git a/src/main/java/org/cbioportal/model/Sample.java b/src/main/java/org/cbioportal/model/Sample.java new file mode 100644 index 00000000000..a3d72e955ce --- /dev/null +++ b/src/main/java/org/cbioportal/model/Sample.java @@ -0,0 +1,141 @@ +package org.cbioportal.model; + +import jakarta.validation.constraints.NotNull; +import java.util.Objects; + +public class Sample extends UniqueKeyBase { + + public enum SampleType { + + PRIMARY_SOLID_TUMOR("Primary Solid Tumor"), + RECURRENT_SOLID_TUMOR("Recurrent Solid Tumor"), + PRIMARY_BLOOD_TUMOR("Primary Blood Tumor"), + RECURRENT_BLOOD_TUMOR("Recurrent Blood Tumor"), + METASTATIC("Metastatic"), + BLOOD_NORMAL("Blood Derived Normal"), + SOLID_NORMAL("Solid Tissues Normal"); + + private String value; + + SampleType(String value) { + this.value = value; + } + + public String getValue() { + return value; + } + + public static SampleType fromString(String value) { + + if (value != null) { + for (SampleType sampleType : SampleType.values()) { + if (value.equalsIgnoreCase(sampleType.value)) { + return sampleType; + } + } + } + return null; + } + + @Override + public String toString() { + return value; + } + } + + private Integer internalId; + @NotNull + private String stableId; + private SampleType sampleType; + private Integer patientId; + @NotNull + private String patientStableId; + private Patient patient; + @NotNull + private String cancerStudyIdentifier; + private Boolean sequenced; + private Boolean copyNumberSegmentPresent; + + public Integer getInternalId() { + return internalId; + } + + public void setInternalId(Integer internalId) { + this.internalId = internalId; + } + + public String getStableId() { + return stableId; + } + + public void setStableId(String stableId) { + this.stableId = stableId; + } + + public SampleType getSampleType() { + return sampleType; + } + + public void setSampleType(SampleType sampleType) { + this.sampleType = sampleType; + } + + public Integer getPatientId() { + return patientId; + } + + public void setPatientId(Integer patientId) { + this.patientId = patientId; + } + + public String getPatientStableId() { + return patientStableId; + } + + public void setPatientStableId(String patientStableId) { + this.patientStableId = patientStableId; + } + + public Patient getPatient() { + return patient; + } + + public void setPatient(Patient patient) { + this.patient = patient; + } + + public String getCancerStudyIdentifier() { + return cancerStudyIdentifier; + } + + public void setCancerStudyIdentifier(String cancerStudyIdentifier) { + this.cancerStudyIdentifier = cancerStudyIdentifier; + } + + public Boolean getSequenced() { + return sequenced; + } + + public void setSequenced(Boolean sequenced) { + this.sequenced = sequenced; + } + + public Boolean getCopyNumberSegmentPresent() { return copyNumberSegmentPresent; } + + public void setCopyNumberSegmentPresent(Boolean copyNumberSegmentPresent) { + this.copyNumberSegmentPresent = copyNumberSegmentPresent; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof Sample)) return false; + Sample sample = (Sample) o; + return getStableId().equals(sample.getStableId()) && getCancerStudyIdentifier().equals(sample.getCancerStudyIdentifier()); + } + + @Override + public int hashCode() { + return Objects.hash(getStableId(), getCancerStudyIdentifier()); + } +} diff --git a/src/main/java/org/cbioportal/model/SampleList.java b/src/main/java/org/cbioportal/model/SampleList.java new file mode 100644 index 00000000000..bda4d2fc681 --- /dev/null +++ b/src/main/java/org/cbioportal/model/SampleList.java @@ -0,0 +1,101 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import java.util.List; + +import jakarta.validation.constraints.NotNull; + +public class SampleList implements Serializable { + + private Integer listId; + @NotNull + private String stableId; + private String category; + private Integer cancerStudyId; + private String cancerStudyIdentifier; + private CancerStudy cancerStudy; + private String name; + private String description; + private Integer sampleCount; + private List sampleIds; + + public Integer getListId() { + return listId; + } + + public void setListId(Integer listId) { + this.listId = listId; + } + + public String getStableId() { + return stableId; + } + + public void setStableId(String stableId) { + this.stableId = stableId; + } + + public String getCategory() { + return category; + } + + public void setCategory(String category) { + this.category = category; + } + + public Integer getCancerStudyId() { + return cancerStudyId; + } + + public void setCancerStudyId(Integer cancerStudyId) { + this.cancerStudyId = cancerStudyId; + } + + public String getCancerStudyIdentifier() { + return cancerStudyIdentifier; + } + + public void setCancerStudyIdentifier(String cancerStudyIdentifier) { + this.cancerStudyIdentifier = cancerStudyIdentifier; + } + + public CancerStudy getCancerStudy() { + return cancerStudy; + } + + public void setCancerStudy(CancerStudy cancerStudy) { + this.cancerStudy = cancerStudy; + } + + public String getName() { + return name; + } + + public void setName(String name) { + this.name = name; + } + + public String getDescription() { + return description; + } + + public void setDescription(String description) { + this.description = description; + } + + public Integer getSampleCount() { + return sampleCount; + } + + public void setSampleCount(Integer sampleCount) { + this.sampleCount = sampleCount; + } + + public List getSampleIds() { + return sampleIds; + } + + public void setSampleIds(List sampleIds) { + this.sampleIds = sampleIds; + } +} diff --git a/model/src/main/java/org/cbioportal/model/SampleListToSampleId.java b/src/main/java/org/cbioportal/model/SampleListToSampleId.java similarity index 91% rename from model/src/main/java/org/cbioportal/model/SampleListToSampleId.java rename to src/main/java/org/cbioportal/model/SampleListToSampleId.java index 3cd7b659984..bfbdb9f548b 100644 --- a/model/src/main/java/org/cbioportal/model/SampleListToSampleId.java +++ b/src/main/java/org/cbioportal/model/SampleListToSampleId.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class SampleListToSampleId implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/SampleTreatmentRow.java b/src/main/java/org/cbioportal/model/SampleTreatmentRow.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/SampleTreatmentRow.java rename to src/main/java/org/cbioportal/model/SampleTreatmentRow.java diff --git a/src/main/java/org/cbioportal/model/StructuralVariant.java b/src/main/java/org/cbioportal/model/StructuralVariant.java new file mode 100644 index 00000000000..3c803a1b337 --- /dev/null +++ b/src/main/java/org/cbioportal/model/StructuralVariant.java @@ -0,0 +1,460 @@ +/* + * Copyright (c) 2018 - 2022 The Hyve B.V. + * This code is licensed under the GNU Affero General Public License (AGPL), + * version 3, or (at your option) any later version. + */ + +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.cbioportal.model; + +import com.fasterxml.jackson.annotation.*; +import io.swagger.v3.oas.annotations.media.Schema; +import org.cbioportal.model.UniqueKeyBase; + +import java.io.Serializable; + +public class StructuralVariant extends UniqueKeyBase implements Serializable { + + private String molecularProfileId; + private String sampleId; + private String patientId; + private String studyId; + private Integer site1EntrezGeneId; + private String site1HugoSymbol; + private String site1EnsemblTranscriptId; + private String site1Chromosome; + private Integer site1Position; + private String site1Contig; + private String site1Region; + private Integer site1RegionNumber; + private String site1Description; + private Integer site2EntrezGeneId; + private String site2HugoSymbol; + private String site2EnsemblTranscriptId; + private String site2Chromosome; + private Integer site2Position; + private String site2Contig; + private String site2Region; + private Integer site2RegionNumber; + private String site2Description; + private String site2EffectOnFrame; + private String ncbiBuild; + private String dnaSupport; + private String rnaSupport; + private Integer normalReadCount; + private Integer tumorReadCount; + private Integer normalVariantCount; + private Integer tumorVariantCount; + private Integer normalPairedEndReadCount; + private Integer tumorPairedEndReadCount; + private Integer normalSplitReadCount; + private Integer tumorSplitReadCount; + private String annotation; + private String breakpointType; + private String connectionType; + private String eventInfo; + private String variantClass; + private Integer length; + private String comments; + private String driverFilter; + private String driverFilterAnn; + private String driverTiersFilter; + private String driverTiersFilterAnn; + private String svStatus; + + @JsonRawValue + @Schema(type = "java.util.Map") + private Object annotationJson; + + public String getMolecularProfileId() { + return molecularProfileId; + } + + public void setMolecularProfileId(String molecularProfileId) { + this.molecularProfileId = molecularProfileId; + } + + public String getSampleId() { + return sampleId; + } + + public void setSampleId(String tumorSampleBarcode) { + this.sampleId = tumorSampleBarcode; + } + + public String getPatientId() { + return patientId; + } + + public void setPatientId(String patientId) { + this.patientId = patientId; + } + + public String getStudyId() { + return studyId; + } + + public void setStudyId(String studyId) { + this.studyId = studyId; + } + + public Integer getSite1EntrezGeneId() { + return site1EntrezGeneId; + } + + public void setSite1EntrezGeneId(Integer site1EntrezGeneId) { + this.site1EntrezGeneId = site1EntrezGeneId; + } + + public String getSite1HugoSymbol() { + return site1HugoSymbol; + } + + public void setSite1HugoSymbol(String site1HugoSymbol) { + this.site1HugoSymbol = site1HugoSymbol; + } + + public String getSite1EnsemblTranscriptId() { + return site1EnsemblTranscriptId; + } + + public void setSite1EnsemblTranscriptId(String site1TranscriptId) { + this.site1EnsemblTranscriptId = site1TranscriptId; + } + + public String getSite1Chromosome() { + return site1Chromosome; + } + + public void setSite1Chromosome(String site1Chrom) { + this.site1Chromosome = site1Chrom; + } + + public Integer getSite1Position() { + return site1Position; + } + + public void setSite1Position(Integer site1Pos) { + this.site1Position = site1Pos; + } + + public String getSite1Description() { + return site1Description; + } + + public void setSite1Description(String site1Desc) { + this.site1Description = site1Desc; + } + + public Integer getSite2EntrezGeneId() { + return site2EntrezGeneId; + } + + public void setSite2EntrezGeneId(Integer site2EntrezGeneId) { + this.site2EntrezGeneId = site2EntrezGeneId; + } + + public String getSite2HugoSymbol() { + return site2HugoSymbol; + } + + public void setSite2HugoSymbol(String site2HugoSymbol) { + this.site2HugoSymbol = site2HugoSymbol; + } + + public String getSite2EnsemblTranscriptId() { + return site2EnsemblTranscriptId; + } + + public void setSite2EnsemblTranscriptId(String site2TranscriptId) { + this.site2EnsemblTranscriptId = site2TranscriptId; + } + + public String getSite2Chromosome() { + return site2Chromosome; + } + + public void setSite2Chromosome(String site2Chrom) { + this.site2Chromosome = site2Chrom; + } + + public Integer getSite2Position() { + return site2Position; + } + + public void setSite2Position(Integer site2Pos) { + this.site2Position = site2Pos; + } + + public String getSite2Description() { + return site2Description; + } + + public void setSite2Description(String site2Desc) { + this.site2Description = site2Desc; + } + + public String getSite2EffectOnFrame() { + return site2EffectOnFrame; + } + + public void setSite2EffectOnFrame(String site2EffectOnFrame) { + this.site2EffectOnFrame = site2EffectOnFrame; + } + + public String getNcbiBuild() { + return ncbiBuild; + } + + public void setNcbiBuild(String ncbiBuild) { + this.ncbiBuild = ncbiBuild; + } + + public String getDnaSupport() { + return dnaSupport; + } + + public void setDnaSupport(String dnaSupport) { + this.dnaSupport = dnaSupport; + } + + public String getRnaSupport() { + return rnaSupport; + } + + public void setRnaSupport(String rnaSupport) { + this.rnaSupport = rnaSupport; + } + + public Integer getNormalReadCount() { + return normalReadCount; + } + + public void setNormalReadCount(Integer normalReadCount) { + this.normalReadCount = normalReadCount; + } + + public Integer getTumorReadCount() { + return tumorReadCount; + } + + public void setTumorReadCount(Integer tumorReadCount) { + this.tumorReadCount = tumorReadCount; + } + + public Integer getNormalVariantCount() { + return normalVariantCount; + } + + public void setNormalVariantCount(Integer normalVariantCount) { + this.normalVariantCount = normalVariantCount; + } + + public Integer getTumorVariantCount() { + return tumorVariantCount; + } + + public void setTumorVariantCount(Integer tumorVariantCount) { + this.tumorVariantCount = tumorVariantCount; + } + + public Integer getNormalPairedEndReadCount() { + return normalPairedEndReadCount; + } + + public void setNormalPairedEndReadCount(Integer normalPairedEndReadCount) { + this.normalPairedEndReadCount = normalPairedEndReadCount; + } + + public Integer getTumorPairedEndReadCount() { + return tumorPairedEndReadCount; + } + + public void setTumorPairedEndReadCount(Integer tumorPairedEndReadCount) { + this.tumorPairedEndReadCount = tumorPairedEndReadCount; + } + + public Integer getNormalSplitReadCount() { + return normalSplitReadCount; + } + + public void setNormalSplitReadCount(Integer normalSplitReadCount) { + this.normalSplitReadCount = normalSplitReadCount; + } + + public Integer getTumorSplitReadCount() { + return tumorSplitReadCount; + } + + public void setTumorSplitReadCount(Integer tumorSplitReadCount) { + this.tumorSplitReadCount = tumorSplitReadCount; + } + + public String getAnnotation() { + return annotation; + } + + public void setAnnotation(String annotation) { + this.annotation = annotation; + } + + public String getBreakpointType() { + return breakpointType; + } + + public void setBreakpointType(String breakpointType) { + this.breakpointType = breakpointType; + } + + public String getConnectionType() { + return connectionType; + } + + public void setConnectionType(String connectionType) { + this.connectionType = connectionType; + } + + public String getEventInfo() { + return eventInfo; + } + + public void setEventInfo(String eventInfo) { + this.eventInfo = eventInfo; + } + + public String getVariantClass() { + return variantClass; + } + + public void setVariantClass(String variantClass) { + this.variantClass = variantClass; + } + + public Integer getLength() { + return length; + } + + public void setLength(Integer length) { + this.length = length; + } + + public String getComments() { + return comments; + } + + public void setComments(String comments) { + this.comments = comments; + } + + public String getDriverFilter() { + return driverFilter; + } + + public void setDriverFilter(String driverFilter) { + this.driverFilter = driverFilter; + } + + public String getDriverFilterAnn() { + return driverFilterAnn; + } + + public void setDriverFilterAnn(String driverFilterAnn) { + this.driverFilterAnn = driverFilterAnn; + } + + public String getDriverTiersFilter() { + return driverTiersFilter; + } + + public void setDriverTiersFilter(String driverTiersFilter) { + this.driverTiersFilter = driverTiersFilter; + } + + public String getDriverTiersFilterAnn() { + return driverTiersFilterAnn; + } + + public void setDriverTiersFilterAnn(String driverTiersFilterAnn) { + this.driverTiersFilterAnn = driverTiersFilterAnn; + } + + public String getSvStatus() { + return svStatus; + } + + public void setSvStatus(String svStatus) { + this.svStatus = svStatus; + } + + public String getSite1Contig() { + return site1Contig; + } + + public void setSite1Contig(String site1Contig) { + this.site1Contig = site1Contig; + } + + public String getSite1Region() { + return site1Region; + } + + public void setSite1Region(String site1Region) { + this.site1Region = site1Region; + } + + public Integer getSite1RegionNumber() { + return site1RegionNumber; + } + + public void setSite1RegionNumber(Integer site1RegionNumber) { + this.site1RegionNumber = site1RegionNumber; + } + + public String getSite2Contig() { + return site2Contig; + } + + public void setSite2Contig(String site2Contig) { + this.site2Contig = site2Contig; + } + + public String getSite2Region() { + return site2Region; + } + + public void setSite2Region(String site2Region) { + this.site2Region = site2Region; + } + + public Integer getSite2RegionNumber() { + return site2RegionNumber; + } + + public void setSite2RegionNumber(Integer site2RegionNumber) { + this.site2RegionNumber = site2RegionNumber; + } + + public Object getAnnotationJson() { + return annotationJson; + } + + public void setAnnotationJson(String annotationJson) { + this.annotationJson = annotationJson; + } +} diff --git a/model/src/main/java/org/cbioportal/model/StructuralVariantFilterQuery.java b/src/main/java/org/cbioportal/model/StructuralVariantFilterQuery.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/StructuralVariantFilterQuery.java rename to src/main/java/org/cbioportal/model/StructuralVariantFilterQuery.java diff --git a/model/src/main/java/org/cbioportal/model/StructuralVariantGeneSubQuery.java b/src/main/java/org/cbioportal/model/StructuralVariantGeneSubQuery.java similarity index 97% rename from model/src/main/java/org/cbioportal/model/StructuralVariantGeneSubQuery.java rename to src/main/java/org/cbioportal/model/StructuralVariantGeneSubQuery.java index e393e0c2d58..224ba6bec2a 100644 --- a/model/src/main/java/org/cbioportal/model/StructuralVariantGeneSubQuery.java +++ b/src/main/java/org/cbioportal/model/StructuralVariantGeneSubQuery.java @@ -3,7 +3,7 @@ import com.fasterxml.jackson.annotation.JsonIgnore; import org.springframework.lang.Nullable; -import javax.validation.constraints.AssertTrue; +import jakarta.validation.constraints.AssertTrue; import java.io.Serializable; public class StructuralVariantGeneSubQuery implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/StructuralVariantQuery.java b/src/main/java/org/cbioportal/model/StructuralVariantQuery.java similarity index 96% rename from model/src/main/java/org/cbioportal/model/StructuralVariantQuery.java rename to src/main/java/org/cbioportal/model/StructuralVariantQuery.java index a6ba42decf8..6dc8856869e 100644 --- a/model/src/main/java/org/cbioportal/model/StructuralVariantQuery.java +++ b/src/main/java/org/cbioportal/model/StructuralVariantQuery.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.Valid; +import jakarta.validation.Valid; import java.io.Serializable; public class StructuralVariantQuery implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/StructuralVariantSpecialValue.java b/src/main/java/org/cbioportal/model/StructuralVariantSpecialValue.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/StructuralVariantSpecialValue.java rename to src/main/java/org/cbioportal/model/StructuralVariantSpecialValue.java diff --git a/model/src/main/java/org/cbioportal/model/StudyViewStructuralVariantFilter.java b/src/main/java/org/cbioportal/model/StudyViewStructuralVariantFilter.java similarity index 98% rename from model/src/main/java/org/cbioportal/model/StudyViewStructuralVariantFilter.java rename to src/main/java/org/cbioportal/model/StudyViewStructuralVariantFilter.java index 84584fb7a59..d4ae0879873 100644 --- a/model/src/main/java/org/cbioportal/model/StudyViewStructuralVariantFilter.java +++ b/src/main/java/org/cbioportal/model/StudyViewStructuralVariantFilter.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.AssertTrue; +import jakarta.validation.constraints.AssertTrue; import java.io.Serializable; import java.util.List; import java.util.Set; diff --git a/model/src/main/java/org/cbioportal/model/TableTimestampPair.java b/src/main/java/org/cbioportal/model/TableTimestampPair.java similarity index 91% rename from model/src/main/java/org/cbioportal/model/TableTimestampPair.java rename to src/main/java/org/cbioportal/model/TableTimestampPair.java index 5d00e428c72..1587bfc8e85 100644 --- a/model/src/main/java/org/cbioportal/model/TableTimestampPair.java +++ b/src/main/java/org/cbioportal/model/TableTimestampPair.java @@ -1,6 +1,6 @@ package org.cbioportal.model; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import java.io.Serializable; public class TableTimestampPair implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/TemporalRelation.java b/src/main/java/org/cbioportal/model/TemporalRelation.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/TemporalRelation.java rename to src/main/java/org/cbioportal/model/TemporalRelation.java diff --git a/model/src/main/java/org/cbioportal/model/Treatment.java b/src/main/java/org/cbioportal/model/Treatment.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/Treatment.java rename to src/main/java/org/cbioportal/model/Treatment.java diff --git a/model/src/main/java/org/cbioportal/model/TreatmentRow.java b/src/main/java/org/cbioportal/model/TreatmentRow.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/TreatmentRow.java rename to src/main/java/org/cbioportal/model/TreatmentRow.java diff --git a/src/main/java/org/cbioportal/model/TypeOfCancer.java b/src/main/java/org/cbioportal/model/TypeOfCancer.java new file mode 100644 index 00000000000..6c564c3e37a --- /dev/null +++ b/src/main/java/org/cbioportal/model/TypeOfCancer.java @@ -0,0 +1,54 @@ +package org.cbioportal.model; + +import java.io.Serializable; +import jakarta.validation.constraints.NotNull; + +public class TypeOfCancer implements Serializable { + + @NotNull + private String typeOfCancerId; + private String name; + private String dedicatedColor; + private String shortName; + private String parent; + + public String getTypeOfCancerId() { + return typeOfCancerId; + } + + public void setTypeOfCancerId(String typeOfCancerId) { + this.typeOfCancerId = typeOfCancerId; + } + + public String getName() { + return name; + } + + public void setName(String name) { + this.name = name; + } + + public String getDedicatedColor() { + return dedicatedColor; + } + + public void setDedicatedColor(String dedicatedColor) { + this.dedicatedColor = dedicatedColor; + } + + public String getShortName() { + return shortName; + } + + public void setShortName(String shortName) { + this.shortName = shortName; + } + + public String getParent() { + return parent; + } + + public void setParent(String parent) { + this.parent = parent; + } +} \ No newline at end of file diff --git a/model/src/main/java/org/cbioportal/model/UniqueKeyBase.java b/src/main/java/org/cbioportal/model/UniqueKeyBase.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/UniqueKeyBase.java rename to src/main/java/org/cbioportal/model/UniqueKeyBase.java diff --git a/model/src/main/java/org/cbioportal/model/User.java b/src/main/java/org/cbioportal/model/User.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/User.java rename to src/main/java/org/cbioportal/model/User.java diff --git a/model/src/main/java/org/cbioportal/model/UserAuthorities.java b/src/main/java/org/cbioportal/model/UserAuthorities.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/UserAuthorities.java rename to src/main/java/org/cbioportal/model/UserAuthorities.java diff --git a/model/src/main/java/org/cbioportal/model/VariantCount.java b/src/main/java/org/cbioportal/model/VariantCount.java similarity index 97% rename from model/src/main/java/org/cbioportal/model/VariantCount.java rename to src/main/java/org/cbioportal/model/VariantCount.java index bf7cec87798..fdc43b721cb 100644 --- a/model/src/main/java/org/cbioportal/model/VariantCount.java +++ b/src/main/java/org/cbioportal/model/VariantCount.java @@ -1,7 +1,7 @@ package org.cbioportal.model; import java.io.Serializable; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; public class VariantCount implements Serializable { diff --git a/model/src/main/java/org/cbioportal/model/meta/BaseMeta.java b/src/main/java/org/cbioportal/model/meta/BaseMeta.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/meta/BaseMeta.java rename to src/main/java/org/cbioportal/model/meta/BaseMeta.java diff --git a/model/src/main/java/org/cbioportal/model/meta/GenericAssayMeta.java b/src/main/java/org/cbioportal/model/meta/GenericAssayMeta.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/meta/GenericAssayMeta.java rename to src/main/java/org/cbioportal/model/meta/GenericAssayMeta.java diff --git a/model/src/main/java/org/cbioportal/model/meta/MutationMeta.java b/src/main/java/org/cbioportal/model/meta/MutationMeta.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/meta/MutationMeta.java rename to src/main/java/org/cbioportal/model/meta/MutationMeta.java diff --git a/model/src/main/java/org/cbioportal/model/util/QueryElement.java b/src/main/java/org/cbioportal/model/util/QueryElement.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/util/QueryElement.java rename to src/main/java/org/cbioportal/model/util/QueryElement.java diff --git a/model/src/main/java/org/cbioportal/model/util/Select.java b/src/main/java/org/cbioportal/model/util/Select.java similarity index 100% rename from model/src/main/java/org/cbioportal/model/util/Select.java rename to src/main/java/org/cbioportal/model/util/Select.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/AlterationDriverAnnotationRepository.java b/src/main/java/org/cbioportal/persistence/AlterationDriverAnnotationRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/AlterationDriverAnnotationRepository.java rename to src/main/java/org/cbioportal/persistence/AlterationDriverAnnotationRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/AlterationRepository.java b/src/main/java/org/cbioportal/persistence/AlterationRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/AlterationRepository.java rename to src/main/java/org/cbioportal/persistence/AlterationRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/CacheEnabledConfig.java b/src/main/java/org/cbioportal/persistence/CacheEnabledConfig.java similarity index 97% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/CacheEnabledConfig.java rename to src/main/java/org/cbioportal/persistence/CacheEnabledConfig.java index a233b203ddc..af04bac392c 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/CacheEnabledConfig.java +++ b/src/main/java/org/cbioportal/persistence/CacheEnabledConfig.java @@ -1,11 +1,11 @@ package org.cbioportal.persistence; +import jakarta.annotation.PostConstruct; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Value; import org.springframework.stereotype.Component; -import javax.annotation.PostConstruct; import java.util.ArrayList; import java.util.Arrays; diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/CancerTypeRepository.java b/src/main/java/org/cbioportal/persistence/CancerTypeRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/CancerTypeRepository.java rename to src/main/java/org/cbioportal/persistence/CancerTypeRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/ClinicalAttributeRepository.java b/src/main/java/org/cbioportal/persistence/ClinicalAttributeRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/ClinicalAttributeRepository.java rename to src/main/java/org/cbioportal/persistence/ClinicalAttributeRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/ClinicalDataRepository.java b/src/main/java/org/cbioportal/persistence/ClinicalDataRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/ClinicalDataRepository.java rename to src/main/java/org/cbioportal/persistence/ClinicalDataRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/ClinicalEventRepository.java b/src/main/java/org/cbioportal/persistence/ClinicalEventRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/ClinicalEventRepository.java rename to src/main/java/org/cbioportal/persistence/ClinicalEventRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/CopyNumberSegmentRepository.java b/src/main/java/org/cbioportal/persistence/CopyNumberSegmentRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/CopyNumberSegmentRepository.java rename to src/main/java/org/cbioportal/persistence/CopyNumberSegmentRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/CosmicCountRepository.java b/src/main/java/org/cbioportal/persistence/CosmicCountRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/CosmicCountRepository.java rename to src/main/java/org/cbioportal/persistence/CosmicCountRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/DataAccessTokenRepository.java b/src/main/java/org/cbioportal/persistence/DataAccessTokenRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/DataAccessTokenRepository.java rename to src/main/java/org/cbioportal/persistence/DataAccessTokenRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/DiscreteCopyNumberRepository.java b/src/main/java/org/cbioportal/persistence/DiscreteCopyNumberRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/DiscreteCopyNumberRepository.java rename to src/main/java/org/cbioportal/persistence/DiscreteCopyNumberRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenePanelRepository.java b/src/main/java/org/cbioportal/persistence/GenePanelRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenePanelRepository.java rename to src/main/java/org/cbioportal/persistence/GenePanelRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/GeneRepository.java b/src/main/java/org/cbioportal/persistence/GeneRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/GeneRepository.java rename to src/main/java/org/cbioportal/persistence/GeneRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenericAssayRepository.java b/src/main/java/org/cbioportal/persistence/GenericAssayRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenericAssayRepository.java rename to src/main/java/org/cbioportal/persistence/GenericAssayRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenesetHierarchyRepository.java b/src/main/java/org/cbioportal/persistence/GenesetHierarchyRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenesetHierarchyRepository.java rename to src/main/java/org/cbioportal/persistence/GenesetHierarchyRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenesetRepository.java b/src/main/java/org/cbioportal/persistence/GenesetRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/GenesetRepository.java rename to src/main/java/org/cbioportal/persistence/GenesetRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/MolecularDataRepository.java b/src/main/java/org/cbioportal/persistence/MolecularDataRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/MolecularDataRepository.java rename to src/main/java/org/cbioportal/persistence/MolecularDataRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/MolecularProfileRepository.java b/src/main/java/org/cbioportal/persistence/MolecularProfileRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/MolecularProfileRepository.java rename to src/main/java/org/cbioportal/persistence/MolecularProfileRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/MutationRepository.java b/src/main/java/org/cbioportal/persistence/MutationRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/MutationRepository.java rename to src/main/java/org/cbioportal/persistence/MutationRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/PatientRepository.java b/src/main/java/org/cbioportal/persistence/PatientRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/PatientRepository.java rename to src/main/java/org/cbioportal/persistence/PatientRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/PersistenceConstants.java b/src/main/java/org/cbioportal/persistence/PersistenceConstants.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/PersistenceConstants.java rename to src/main/java/org/cbioportal/persistence/PersistenceConstants.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/ReferenceGenomeGeneRepository.java b/src/main/java/org/cbioportal/persistence/ReferenceGenomeGeneRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/ReferenceGenomeGeneRepository.java rename to src/main/java/org/cbioportal/persistence/ReferenceGenomeGeneRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/ResourceDataRepository.java b/src/main/java/org/cbioportal/persistence/ResourceDataRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/ResourceDataRepository.java rename to src/main/java/org/cbioportal/persistence/ResourceDataRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/ResourceDefinitionRepository.java b/src/main/java/org/cbioportal/persistence/ResourceDefinitionRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/ResourceDefinitionRepository.java rename to src/main/java/org/cbioportal/persistence/ResourceDefinitionRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/SampleListRepository.java b/src/main/java/org/cbioportal/persistence/SampleListRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/SampleListRepository.java rename to src/main/java/org/cbioportal/persistence/SampleListRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/SampleRepository.java b/src/main/java/org/cbioportal/persistence/SampleRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/SampleRepository.java rename to src/main/java/org/cbioportal/persistence/SampleRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/SecurityRepository.java b/src/main/java/org/cbioportal/persistence/SecurityRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/SecurityRepository.java rename to src/main/java/org/cbioportal/persistence/SecurityRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/SignificantCopyNumberRegionRepository.java b/src/main/java/org/cbioportal/persistence/SignificantCopyNumberRegionRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/SignificantCopyNumberRegionRepository.java rename to src/main/java/org/cbioportal/persistence/SignificantCopyNumberRegionRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/SignificantlyMutatedGeneRepository.java b/src/main/java/org/cbioportal/persistence/SignificantlyMutatedGeneRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/SignificantlyMutatedGeneRepository.java rename to src/main/java/org/cbioportal/persistence/SignificantlyMutatedGeneRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/StaticDataTimeStampRepository.java b/src/main/java/org/cbioportal/persistence/StaticDataTimeStampRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/StaticDataTimeStampRepository.java rename to src/main/java/org/cbioportal/persistence/StaticDataTimeStampRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/StructuralVariantRepository.java b/src/main/java/org/cbioportal/persistence/StructuralVariantRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/StructuralVariantRepository.java rename to src/main/java/org/cbioportal/persistence/StructuralVariantRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/StudyRepository.java b/src/main/java/org/cbioportal/persistence/StudyRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/StudyRepository.java rename to src/main/java/org/cbioportal/persistence/StudyRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/TreatmentRepository.java b/src/main/java/org/cbioportal/persistence/TreatmentRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/TreatmentRepository.java rename to src/main/java/org/cbioportal/persistence/TreatmentRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/VariantCountRepository.java b/src/main/java/org/cbioportal/persistence/VariantCountRepository.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/VariantCountRepository.java rename to src/main/java/org/cbioportal/persistence/VariantCountRepository.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapBuilder.java b/src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapBuilder.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapBuilder.java rename to src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapBuilder.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapUtil.java b/src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapUtil.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapUtil.java rename to src/main/java/org/cbioportal/persistence/cachemaputil/CacheMapUtil.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/InactiveCacheMapUtil.java b/src/main/java/org/cbioportal/persistence/cachemaputil/InactiveCacheMapUtil.java similarity index 93% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/InactiveCacheMapUtil.java rename to src/main/java/org/cbioportal/persistence/cachemaputil/InactiveCacheMapUtil.java index 07fe7f94c37..58d8d2d1744 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/InactiveCacheMapUtil.java +++ b/src/main/java/org/cbioportal/persistence/cachemaputil/InactiveCacheMapUtil.java @@ -36,12 +36,10 @@ import org.cbioportal.model.CancerStudy; import org.cbioportal.model.MolecularProfile; import org.cbioportal.model.SampleList; -import org.cbioportal.utils.config.annotation.ConditionalOnExpression; import org.springframework.stereotype.Component; @Component // This implementation of the CacheMapUtils is instantiated on portals where all uses can access any study. -@ConditionalOnExpression("! T(org.cbioportal.utils.security.PortalSecurityConfig).userAuthorizationEnabled('${authenticate}')") public class InactiveCacheMapUtil implements CacheMapUtil { // Since user-permission evaluation is not needed when this bean is present, throw an error when it is accessed. diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/SpringManagedCacheMapUtil.java b/src/main/java/org/cbioportal/persistence/cachemaputil/SpringManagedCacheMapUtil.java similarity index 92% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/SpringManagedCacheMapUtil.java rename to src/main/java/org/cbioportal/persistence/cachemaputil/SpringManagedCacheMapUtil.java index 46feef1f226..5eae44a6812 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/SpringManagedCacheMapUtil.java +++ b/src/main/java/org/cbioportal/persistence/cachemaputil/SpringManagedCacheMapUtil.java @@ -32,23 +32,20 @@ package org.cbioportal.persistence.cachemaputil; +import jakarta.annotation.PostConstruct; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.MolecularProfile; import org.cbioportal.model.SampleList; -import org.cbioportal.utils.config.annotation.ConditionalOnExpression; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Component; -import javax.annotation.PostConstruct; import java.util.Map; -@Component +//@Component // Instantiate when user authorization is active and spring-managed implementation is needed -@ConditionalOnExpression("T(org.cbioportal.utils.security.PortalSecurityConfig).userAuthorizationEnabled('${authenticate}') && T(Boolean).parseBoolean('${cache.cache-map-utils.spring-managed}')") public class SpringManagedCacheMapUtil implements CacheMapUtil { private static final Logger LOG = LoggerFactory.getLogger(SpringManagedCacheMapUtil.class); diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/StaticRefCacheMapUtil.java b/src/main/java/org/cbioportal/persistence/cachemaputil/StaticRefCacheMapUtil.java similarity index 92% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/StaticRefCacheMapUtil.java rename to src/main/java/org/cbioportal/persistence/cachemaputil/StaticRefCacheMapUtil.java index 56f46b23deb..ce598fbbbd1 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/cachemaputil/StaticRefCacheMapUtil.java +++ b/src/main/java/org/cbioportal/persistence/cachemaputil/StaticRefCacheMapUtil.java @@ -32,21 +32,19 @@ package org.cbioportal.persistence.cachemaputil; +import jakarta.annotation.PostConstruct; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.MolecularProfile; import org.cbioportal.model.SampleList; -import org.cbioportal.utils.config.annotation.ConditionalOnExpression; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; -import javax.annotation.PostConstruct; import java.util.Map; @Component // Instantiate when user authorization is active and spring-managed implementation is not needed -@ConditionalOnExpression("T(org.cbioportal.utils.security.PortalSecurityConfig).userAuthorizationEnabled('${authenticate}') && ! T(Boolean).parseBoolean('${cache.cache-map-utils.spring-managed}')") public class StaticRefCacheMapUtil implements CacheMapUtil { private static final Logger LOG = LoggerFactory.getLogger(StaticRefCacheMapUtil.class); diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/config/EhCacheConfig.java b/src/main/java/org/cbioportal/persistence/config/EhCacheConfig.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/config/EhCacheConfig.java rename to src/main/java/org/cbioportal/persistence/config/EhCacheConfig.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/config/RedisConfig.java b/src/main/java/org/cbioportal/persistence/config/RedisConfig.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/config/RedisConfig.java rename to src/main/java/org/cbioportal/persistence/config/RedisConfig.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationCountsMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/AlterationCountsMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationCountsMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/AlterationCountsMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMapper.java similarity index 97% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMapper.java index 1f4209deffb..501bbe18444 100644 --- a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMapper.java +++ b/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMapper.java @@ -15,7 +15,7 @@ List getSampleClinicalData(List studyIds, List sam BaseMeta getMetaSampleClinicalData(List studyIds, List sampleIds, List attributeIds); List getPatientClinicalData(List studyIds, List patientIds, List attributeIds, - String projection, Integer limit, Integer offset, String sortby, + String projection, Integer limit, Integer offset, String sortBy, String direction); List getSampleClinicalTable(List studyIds, List sampleIds, String projection, diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GeneMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/GeneMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GeneMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/GeneMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenePanelMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/GenePanelMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenePanelMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenePanelMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/GenesetMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenesetMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MutationMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/MutationMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MutationMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/MutationMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/PatientMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/PatientMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/PatientMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/PatientMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/ResourceDataMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/ResourceDefinitionMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleListMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/SampleListMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleListMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/SampleListMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/SampleMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/SampleMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SecurityMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/SecurityMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SecurityMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/SecurityMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SecurityMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/SecurityMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SecurityMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/SecurityMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimeStampMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimeStampMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimeStampMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimeStampMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimestampMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimestampMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimestampMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/StaticDataTimestampMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StudyMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/StudyMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StudyMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/StudyMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/TreatmentMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/TreatmentMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/TreatmentMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/TreatmentMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepository.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/VariantCountMapper.java b/src/main/java/org/cbioportal/persistence/mybatis/VariantCountMapper.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/VariantCountMapper.java rename to src/main/java/org/cbioportal/persistence/mybatis/VariantCountMapper.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepository.java b/src/main/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepository.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepository.java rename to src/main/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepository.java diff --git a/src/main/java/org/cbioportal/persistence/mybatis/config/PersistenceConfig.java b/src/main/java/org/cbioportal/persistence/mybatis/config/PersistenceConfig.java new file mode 100644 index 00000000000..86a604875a5 --- /dev/null +++ b/src/main/java/org/cbioportal/persistence/mybatis/config/PersistenceConfig.java @@ -0,0 +1,47 @@ +package org.cbioportal.persistence.mybatis.config; + +import org.apache.ibatis.session.SqlSessionFactory; +import org.cbioportal.model.Sample; +import org.cbioportal.persistence.mybatis.typehandler.SampleTypeTypeHandler; +import org.mybatis.spring.SqlSessionFactoryBean; +import org.mybatis.spring.annotation.MapperScan; +import org.mybatis.spring.boot.autoconfigure.ConfigurationCustomizer; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.core.io.Resource; +import org.springframework.core.io.support.PathMatchingResourcePatternResolver; + +import javax.sql.DataSource; + + +@Configuration +@MapperScan("org.cbioportal.persistence.mybatis") +public class PersistenceConfig { + + // This is the only way I was able to register the SampleType TypeHandler to MyBatis. + // The bean-based approach described in the MyBatis docs for mybatis-spring-boot-autoconfigure + // did not work in my hands (See: https://mybatis.org/spring-boot-starter/mybatis-spring-boot-autoconfigure#Detecting_MyBatis_components). + @Bean + ConfigurationCustomizer mybatisConfigurationCustomizer() { + return new ConfigurationCustomizer() { + @Override + public void customize(org.apache.ibatis.session.Configuration configuration) { + configuration.getTypeHandlerRegistry().register(Sample.SampleType.class, new SampleTypeTypeHandler()); + } + }; + } + + @Bean + public SqlSessionFactoryBean sqlSessionFactory(DataSource dataSource) throws Exception { + SqlSessionFactoryBean sessionFactory = new SqlSessionFactoryBean(); + sessionFactory.setDataSource(dataSource); + // Specify the location of your mapper XML files in the 'mappers' directory + Resource[] resources = new PathMatchingResourcePatternResolver() + .getResources("classpath:org/cbioportal/persistence/mybatis/*.xml"); + + sessionFactory.setMapperLocations(resources); + sessionFactory.setTypeHandlers(new SampleTypeTypeHandler()); + return sessionFactory; + } + +} diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/typehandler/SampleTypeTypeHandler.java b/src/main/java/org/cbioportal/persistence/mybatis/typehandler/SampleTypeTypeHandler.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/typehandler/SampleTypeTypeHandler.java rename to src/main/java/org/cbioportal/persistence/mybatis/typehandler/SampleTypeTypeHandler.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/CustomMyBatisObjectFactory.java b/src/main/java/org/cbioportal/persistence/mybatis/util/CustomMyBatisObjectFactory.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/CustomMyBatisObjectFactory.java rename to src/main/java/org/cbioportal/persistence/mybatis/util/CustomMyBatisObjectFactory.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/LimitedPermissionArrayList.java b/src/main/java/org/cbioportal/persistence/mybatis/util/LimitedPermissionArrayList.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/LimitedPermissionArrayList.java rename to src/main/java/org/cbioportal/persistence/mybatis/util/LimitedPermissionArrayList.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtil.java b/src/main/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtil.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtil.java rename to src/main/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtil.java diff --git a/persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/OffsetCalculator.java b/src/main/java/org/cbioportal/persistence/mybatis/util/OffsetCalculator.java similarity index 100% rename from persistence/persistence-mybatis/src/main/java/org/cbioportal/persistence/mybatis/util/OffsetCalculator.java rename to src/main/java/org/cbioportal/persistence/mybatis/util/OffsetCalculator.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CacheEventLogger.java b/src/main/java/org/cbioportal/persistence/util/CacheEventLogger.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CacheEventLogger.java rename to src/main/java/org/cbioportal/persistence/util/CacheEventLogger.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CacheUtils.java b/src/main/java/org/cbioportal/persistence/util/CacheUtils.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CacheUtils.java rename to src/main/java/org/cbioportal/persistence/util/CacheUtils.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomEhcachingProvider.java b/src/main/java/org/cbioportal/persistence/util/CustomEhcachingProvider.java similarity index 97% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomEhcachingProvider.java rename to src/main/java/org/cbioportal/persistence/util/CustomEhcachingProvider.java index 39d70f55c64..b4591cc3600 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomEhcachingProvider.java +++ b/src/main/java/org/cbioportal/persistence/util/CustomEhcachingProvider.java @@ -197,13 +197,21 @@ public void detectCacheConfigurationErrorsAndLog() { .append(") but this resource is not available to the classloader"); } else { boolean readable = false; + InputStream configFileInputStream = null; try { - InputStream configFileInputStream = configFileURL.openStream(); + configFileInputStream = configFileURL.openStream(); configFileInputStream.read(); configFileInputStream.close(); readable = true; } catch (IOException e) { + } finally { + try { + configFileInputStream.close(); + } catch (IOException e) { + LOG.error("UNABLE TO CLOSE configFileURLInputStream"); + } } + if (!readable) { messages.append("\n property ehcache.xml_configuration has value (") .append(xmlConfigurationFile) diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomKeyGenerator.java b/src/main/java/org/cbioportal/persistence/util/CustomKeyGenerator.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomKeyGenerator.java rename to src/main/java/org/cbioportal/persistence/util/CustomKeyGenerator.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCache.java b/src/main/java/org/cbioportal/persistence/util/CustomRedisCache.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCache.java rename to src/main/java/org/cbioportal/persistence/util/CustomRedisCache.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCacheManager.java b/src/main/java/org/cbioportal/persistence/util/CustomRedisCacheManager.java similarity index 97% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCacheManager.java rename to src/main/java/org/cbioportal/persistence/util/CustomRedisCacheManager.java index 5519c40b2da..0c5cdb93dcd 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCacheManager.java +++ b/src/main/java/org/cbioportal/persistence/util/CustomRedisCacheManager.java @@ -1,5 +1,6 @@ package org.cbioportal.persistence.util; +import jakarta.validation.constraints.NotNull; import org.redisson.api.RedissonClient; import org.springframework.cache.Cache; import org.springframework.cache.CacheManager; @@ -8,7 +9,6 @@ import java.util.concurrent.ConcurrentHashMap; import java.util.concurrent.ConcurrentMap; -import javax.validation.constraints.NotNull; public class CustomRedisCacheManager implements CacheManager { private final ConcurrentMap caches = new ConcurrentHashMap<>(); diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCachingProvider.java b/src/main/java/org/cbioportal/persistence/util/CustomRedisCachingProvider.java similarity index 88% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCachingProvider.java rename to src/main/java/org/cbioportal/persistence/util/CustomRedisCachingProvider.java index c0feaf5e5fe..88b6aaa79c3 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/CustomRedisCachingProvider.java +++ b/src/main/java/org/cbioportal/persistence/util/CustomRedisCachingProvider.java @@ -38,6 +38,7 @@ import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Value; +import org.springframework.cache.Cache; import org.springframework.cache.CacheManager; public class CustomRedisCachingProvider { @@ -88,8 +89,15 @@ public CacheManager getCacheManager(RedissonClient redissonClient) { CustomRedisCacheManager manager = new CustomRedisCacheManager(redissonClient, expiryMins); if (clearOnStartup) { - manager.getCache(redisName + "GeneralRepositoryCache").clear(); - manager.getCache(redisName + "StaticRepositoryCacheOne").clear(); + Cache generalCache = manager.getCache(redisName + "GeneralRepositoryCache"); + if(generalCache != null) { + generalCache.clear(); + } + + Cache staticRepositoryCache = manager.getCache(redisName + "StaticRepositoryCacheOne"); + if(staticRepositoryCache != null) { + staticRepositoryCache.clear(); + } } return manager; } diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/EhCacheUtils.java b/src/main/java/org/cbioportal/persistence/util/EhCacheUtils.java similarity index 97% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/EhCacheUtils.java rename to src/main/java/org/cbioportal/persistence/util/EhCacheUtils.java index 1b1ff3ab67c..b8226ec0f80 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/EhCacheUtils.java +++ b/src/main/java/org/cbioportal/persistence/util/EhCacheUtils.java @@ -1,11 +1,11 @@ package org.cbioportal.persistence.util; +import jakarta.annotation.PostConstruct; import org.cbioportal.utils.config.annotation.ConditionalOnProperty; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; -import javax.annotation.PostConstruct; import javax.cache.CacheManager; import java.util.ArrayList; import java.util.List; diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/EhcacheStatistics.java b/src/main/java/org/cbioportal/persistence/util/EhcacheStatistics.java similarity index 99% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/EhcacheStatistics.java rename to src/main/java/org/cbioportal/persistence/util/EhcacheStatistics.java index 239b00f87b1..bbf5d273ed9 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/EhcacheStatistics.java +++ b/src/main/java/org/cbioportal/persistence/util/EhcacheStatistics.java @@ -32,6 +32,7 @@ package org.cbioportal.persistence.util; +import jakarta.annotation.PostConstruct; import org.cbioportal.utils.config.annotation.ConditionalOnProperty; import org.ehcache.core.statistics.*; import org.ehcache.config.ResourceType; @@ -41,7 +42,6 @@ import org.springframework.stereotype.Component; import java.util.Map; -import javax.annotation.PostConstruct; @Component @ConditionalOnProperty(name = "persistence.cache_type", havingValue = {"ehcache-heap", "ehcache-disk", "ehcache-hybrid"}) diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/LoggingCacheErrorHandler.java b/src/main/java/org/cbioportal/persistence/util/LoggingCacheErrorHandler.java similarity index 100% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/LoggingCacheErrorHandler.java rename to src/main/java/org/cbioportal/persistence/util/LoggingCacheErrorHandler.java diff --git a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/RedisCacheUtils.java b/src/main/java/org/cbioportal/persistence/util/RedisCacheUtils.java similarity index 79% rename from persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/RedisCacheUtils.java rename to src/main/java/org/cbioportal/persistence/util/RedisCacheUtils.java index 6d9cabdb1a0..67639dc75b5 100644 --- a/persistence/persistence-api/src/main/java/org/cbioportal/persistence/util/RedisCacheUtils.java +++ b/src/main/java/org/cbioportal/persistence/util/RedisCacheUtils.java @@ -23,9 +23,13 @@ public class RedisCacheUtils implements CacheUtils { @Override public List getKeys(String cacheName) { Cache cache = cacheManager.getCache(cacheName); - Object nativeCache = cache.getNativeCache(); - if (nativeCache instanceof RedissonClient) { - return ((RedissonClient)nativeCache) + + if(cache == null) { + throw new RuntimeException("Native cache not of class RedissonCache!!!"); + } + + if (cache.getNativeCache() instanceof RedissonClient) { + return ((RedissonClient)cache.getNativeCache()) .getKeys() .getKeysStream() .filter(k -> k.startsWith(cache.getName() + DELIMITER)) @@ -38,6 +42,8 @@ public List getKeys(String cacheName) { @Override public void evictByPattern(String cacheName, String pattern) { Cache cache = cacheManager.getCache(cacheName); - cache.evict(pattern); + if(cache != null) { + cache.evict(pattern); + } } } diff --git a/src/main/java/org/cbioportal/properties/PortalProperties.java b/src/main/java/org/cbioportal/properties/PortalProperties.java new file mode 100644 index 00000000000..fbb8f3a876f --- /dev/null +++ b/src/main/java/org/cbioportal/properties/PortalProperties.java @@ -0,0 +1,24 @@ +package org.cbioportal.properties; + +import org.cbioportal.utils.validation.AllowedValues; +import org.springframework.boot.context.properties.ConfigurationProperties; +import org.springframework.context.annotation.Configuration; +import org.springframework.validation.annotation.Validated; + +@Validated +@Configuration +@ConfigurationProperties +public class PortalProperties { + + @AllowedValues(values = {"false", "saml", "oauth2", + "optional_oauth2", "social_oauth"}) + private String authenticate; + + public void setAuthenticate(String authenticate) { + this.authenticate = authenticate; + } + + public String getAuthenticate() { + return authenticate; + } +} diff --git a/web/src/main/java/org/cbioportal/proxy/LegacyProxyController.java b/src/main/java/org/cbioportal/proxy/LegacyProxyController.java similarity index 92% rename from web/src/main/java/org/cbioportal/proxy/LegacyProxyController.java rename to src/main/java/org/cbioportal/proxy/LegacyProxyController.java index c6eb8f36380..a2403f22f86 100644 --- a/web/src/main/java/org/cbioportal/proxy/LegacyProxyController.java +++ b/src/main/java/org/cbioportal/proxy/LegacyProxyController.java @@ -38,10 +38,9 @@ import java.util.HashMap; import java.util.Map; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import org.json.simple.JSONObject; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.springframework.beans.factory.annotation.Value; import org.springframework.http.HttpEntity; import org.springframework.http.HttpMethod; @@ -56,7 +55,7 @@ import org.springframework.web.client.RestTemplate; @Controller -@RequestMapping("/proxy") +@RequestMapping("/api/proxy") public class LegacyProxyController { private String bitlyURL; @@ -87,8 +86,8 @@ public void setEnableOncokb(Boolean property) { // Created by Hongxin @RequestMapping(value="/{path}") public @ResponseBody String getProxyURL(@PathVariable String path, - @RequestBody(required = false) String body, HttpMethod method, - HttpServletRequest request, HttpServletResponse response) throws URISyntaxException, IOException { + @RequestBody(required = false) String body, HttpMethod method, + HttpServletRequest request, HttpServletResponse response) throws URISyntaxException, IOException { Map pathToUrl = new HashMap<>(); pathToUrl.put("bitly", bitlyURL); diff --git a/web/src/main/java/org/cbioportal/proxy/Monkifier.java b/src/main/java/org/cbioportal/proxy/Monkifier.java similarity index 97% rename from web/src/main/java/org/cbioportal/proxy/Monkifier.java rename to src/main/java/org/cbioportal/proxy/Monkifier.java index c75b64a1a63..b50d6da4dfb 100644 --- a/web/src/main/java/org/cbioportal/proxy/Monkifier.java +++ b/src/main/java/org/cbioportal/proxy/Monkifier.java @@ -1,11 +1,11 @@ package org.cbioportal.proxy; +import jakarta.servlet.http.HttpServletRequest; import org.apache.commons.codec.binary.Base64; import org.springframework.stereotype.Component; import org.springframework.util.CollectionUtils; import org.springframework.web.util.UriComponentsBuilder; -import javax.servlet.http.HttpServletRequest; import java.util.Arrays; import java.util.List; import java.util.Map; diff --git a/src/main/java/org/cbioportal/proxy/ProxyController.java b/src/main/java/org/cbioportal/proxy/ProxyController.java new file mode 100644 index 00000000000..36e670c3ca9 --- /dev/null +++ b/src/main/java/org/cbioportal/proxy/ProxyController.java @@ -0,0 +1,251 @@ +package org.cbioportal.proxy; + +import jakarta.servlet.http.HttpServletRequest; +import org.apache.commons.lang3.StringUtils; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.*; +import org.springframework.http.converter.StringHttpMessageConverter; +import org.springframework.util.ObjectUtils; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.ResponseStatus; +import org.springframework.web.bind.annotation.RestController; +import org.springframework.web.client.RestTemplate; + + +import java.io.*; +import java.net.URI; +import java.net.URISyntaxException; +import java.nio.charset.StandardCharsets; +import java.util.Properties; + +// TODO Consider creating separate DispatcherServlets as in the original web.xml +// See: https://stackoverflow.com/a/30686733/11651683 + +@RestController +@RequestMapping("/proxy") +public class ProxyController { + private static final String DEFAULT_ONCOKB_URL = "https://public.api.oncokb.org/api/v1"; + private Properties properties; + + private Logger LOG = LoggerFactory.getLogger(ProxyController.class); + + @Autowired + private Monkifier monkifier; + + @Value("${oncokb.token:}") + private String oncokbToken; + + @Value("${oncokb.public_api.url:https://public.api.oncokb.org/api/v1}") + private String oncokbApiUrl; + + @Value("${show.oncokb:false}") + private Boolean showOncokb; + + @RequestMapping("/**") + public String proxy(@RequestBody(required = false) String body, HttpMethod method, HttpServletRequest request) + throws URISyntaxException { + HttpHeaders httpHeaders = initHeaders(request); + + // TODO when reimplemeting different dispatcherservlets with different context roots + // reset this to 'String requestPathInfo = request.getPathInfo();' + String requestPathInfo = request.getPathInfo() == null? request.getServletPath() : request.getPathInfo(); + + return exchangeData(body, + buildUri(requestPathInfo, request.getQueryString(), false), + method, + httpHeaders, + String.class + ).getBody(); + } + //TODO: Hey figure out if we need this + @RequestMapping("/legacy/proxy/oncokb/**") + public String legacyProxyOncokb( + @RequestBody(required = false) String body, + HttpMethod method, + HttpServletRequest request + ) throws URISyntaxException { + String token = request.getHeader("X-Proxy-User-Agreement"); + token = (token == null || token.isEmpty()) ? "NA": token; + + return exchangeOncokbData( + body, + request.getPathInfo().replaceFirst("/oncokb", ""), + request.getQueryString(), + method, + getOncokbHeaders(request, token) + ); + } + + @RequestMapping("/A8F74CD7851BDEE8DCD2E86AB4E2A711/**") + public String proxyEncodedOncokb( + @RequestBody(required = false) String body, + HttpMethod method, + HttpServletRequest request + ) throws URISyntaxException, UnsupportedEncodingException { + // make sure that the custom Proxy User Agreement header exists + String proxyUserAgreement = request.getHeader("X-Proxy-User-Agreement"); + if (proxyUserAgreement == null || !proxyUserAgreement.equals( + "I/We do NOT use this obfuscated proxy to programmatically obtain private OncoKB data. " + + "I/We know that I/we should get a valid data access token by registering at https://www.oncokb.org/account/register." + )) { + throw new OncoKBProxyUserAgreementException(); + } + + String decodedBody = body == null ? null: this.monkifier.decodeBase64(body); + String encodedPath = request.getRequestURI().replaceFirst("/proxy/A8F74CD7851BDEE8DCD2E86AB4E2A711/", ""); + String decodedPath = this.monkifier.decodeBase64(encodedPath); + String decodedQueryString = this.monkifier.decodeQueryString(request); + + String response = exchangeOncokbData( + decodedBody, + decodedPath, + decodedQueryString, + method, + getOncokbHeaders(request) + ); + + return "\"" + this.monkifier.encodeBase64(response) + "\""; + } + + private String exchangeOncokbData( + String body, + String pathInfo, + String queryString, + HttpMethod method, + HttpHeaders httpHeaders + ) throws URISyntaxException { + return exchangeData( + body, + buildUri(this.oncokbApiUrl + pathInfo, queryString), + method, + httpHeaders, + String.class + ).getBody(); + } + + private HttpHeaders getOncokbHeaders(HttpServletRequest request) { + return this.getOncokbHeaders(request, null); + } + + private HttpHeaders getOncokbHeaders(HttpServletRequest request, String token) { + String oncokbToken = token == null ? this.oncokbToken : token; + + if (!this.showOncokb) { + throw new OncoKBServiceIsDisabledException(); + } + + HttpHeaders httpHeaders = initHeaders(request); + + if (!StringUtils.isEmpty(oncokbToken)) { + httpHeaders.add("Authorization", "Bearer " + oncokbToken); + } + + return httpHeaders; + } + + //TODO: Figure out what is different (Rebased from Spring Boot Branch) + @RequestMapping("/proxy/oncokb/**") + public String proxyOncokb(@RequestBody(required = false) String body, HttpMethod method, HttpServletRequest request) + throws URISyntaxException { + + if (!this.showOncokb) { + throw new OncoKBServiceIsDisabledException(); + } + + HttpHeaders httpHeaders = initHeaders(request); + + if (!ObjectUtils.isEmpty(this.oncokbToken)) { + httpHeaders.add("Authorization", "Bearer " + this.oncokbToken); + } + + // TODO when reimplemeting different dispatcherservlets with different context roots + // reset this to 'String requestPathInfo = request.getPathInfo();' + String requestPathInfo = request.getPathInfo() == null? request.getServletPath() : request.getPathInfo(); + String replaceString = request.getPathInfo() == null? "/proxy/oncokb" : "/oncokb"; + return exchangeData(body, + buildUri(this.oncokbApiUrl + requestPathInfo.replaceFirst(replaceString, ""), request.getQueryString()), + method, + httpHeaders, + String.class).getBody(); + } + + private HttpHeaders initHeaders(HttpServletRequest request) { + HttpHeaders httpHeaders = new HttpHeaders(); + + String contentType = request.getHeader("Content-Type"); + if (contentType != null) { + httpHeaders.setContentType(MediaType.valueOf(contentType)); + } + + return httpHeaders; + } + + private URI buildUri(String path, String queryString, boolean useSecureProtocol) throws URISyntaxException { + return buildUri((useSecureProtocol ? "https" : "http") + ":/" + path, queryString); + } + + private URI buildUri(String path, String queryString) throws URISyntaxException { + return new URI(path + (queryString == null ? "" : "?" + queryString)); + } + + private ResponseEntity exchangeData(String body, URI uri, HttpMethod method, HttpHeaders httpHeaders, Class responseType) { + RestTemplate restTemplate = new RestTemplate(); + restTemplate.getMessageConverters().add(0, new StringHttpMessageConverter(StandardCharsets.UTF_8)); + return restTemplate.exchange(uri, method, new HttpEntity<>(body, httpHeaders), responseType); + } + + + private InputStream getResourceStream(String propertiesFileName) + { + String resourceFilename = null; + InputStream resourceFIS = null; + + try { + String home = System.getenv("PORTAL_HOME"); + if (home != null) { + resourceFilename = + home + File.separator + propertiesFileName; + resourceFIS = new FileInputStream(resourceFilename); + } + } catch (FileNotFoundException e) { + } + + if (resourceFIS == null) { + resourceFIS = this.getClass().getClassLoader(). + getResourceAsStream(propertiesFileName); + } + + return resourceFIS; + } + private Properties loadProperties(InputStream resourceInputStream) + { + Properties properties = new Properties(); + + try { + properties.load(resourceInputStream); + resourceInputStream.close(); + } + catch (IOException e) { + System.out.println("Error loading properties file: " + e.getMessage()); + } + + return properties; + } + + @ResponseStatus(code = HttpStatus.NOT_FOUND, reason = "OncoKB service is disabled") + public class OncoKBServiceIsDisabledException extends RuntimeException { + } + + @ResponseStatus(code = HttpStatus.FORBIDDEN, reason = "No OncoKB access token is provided") + public class NoOncoKBTokenProvidedException extends RuntimeException { + } + + @ResponseStatus(code = HttpStatus.BAD_REQUEST, reason = "Fair Usage Agreement is missing") + public class OncoKBProxyUserAgreementException extends RuntimeException { + } + +} \ No newline at end of file diff --git a/security/permission-evaluator/src/main/java/org/cbioportal/security/CancerStudyPermissionEvaluator.java b/src/main/java/org/cbioportal/security/CancerStudyPermissionEvaluator.java similarity index 91% rename from security/permission-evaluator/src/main/java/org/cbioportal/security/CancerStudyPermissionEvaluator.java rename to src/main/java/org/cbioportal/security/CancerStudyPermissionEvaluator.java index e383f795857..7947c204e5d 100644 --- a/security/permission-evaluator/src/main/java/org/cbioportal/security/CancerStudyPermissionEvaluator.java +++ b/src/main/java/org/cbioportal/security/CancerStudyPermissionEvaluator.java @@ -34,12 +34,17 @@ import java.io.Serializable; import java.util.*; +import java.util.stream.Collectors; + +import org.cbioportal.model.CancerStudy; +import org.cbioportal.model.MolecularProfile; +import org.cbioportal.model.Patient; +import org.cbioportal.model.SampleList; +import org.cbioportal.persistence.cachemaputil.CacheMapUtil; +import org.cbioportal.utils.security.AccessLevel; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import org.cbioportal.model.*; -import org.cbioportal.persistence.cachemaputil.CacheMapUtil; import org.springframework.beans.factory.annotation.*; -import org.cbioportal.utils.security.AccessLevel; import org.springframework.security.access.PermissionEvaluator; import org.springframework.security.core.Authentication; import org.springframework.security.core.authority.AuthorityUtils; @@ -54,8 +59,7 @@ */ public class CancerStudyPermissionEvaluator implements PermissionEvaluator { - @Autowired - private CacheMapUtil cacheMapUtil; + private final CacheMapUtil cacheMapUtil; private static final String ALL_CANCER_STUDIES_ID = "all"; private static final String ALL_TCGA_CANCER_STUDIES_ID = "all_tcga"; @@ -68,27 +72,31 @@ public class CancerStudyPermissionEvaluator implements PermissionEvaluator { private static final String TARGET_TYPE_COLLECTION_OF_CANCER_STUDY_IDS = "Collection"; private static final String TARGET_TYPE_COLLECTION_OF_MOLECULAR_PROFILE_IDS = "Collection"; private static final String TARGET_TYPE_COLLECTION_OF_GENETIC_PROFILE_IDS = "Collection"; - private static Logger log = LoggerFactory.getLogger(CancerStudyPermissionEvaluator.class); + private static final Logger log = LoggerFactory.getLogger(CancerStudyPermissionEvaluator.class); - @Value("${app.name:}") - private String APP_NAME; + private final String APP_NAME; private String DEFAULT_APP_NAME = "public_portal"; - @Value("${filter_groups_by_appname:true}") - private String FILTER_GROUPS_BY_APP_NAME; + private final String FILTER_GROUPS_BY_APP_NAME; - private static String PUBLIC_CANCER_STUDIES_GROUP; - @Value("${always_show_study_group:}") - private void setPublicCancerStudiesGroup(String property) { - PUBLIC_CANCER_STUDIES_GROUP = property; - if (log.isDebugEnabled()) { - log.debug("setPublicCancerStudiesGroup(), always_show_study_group = " + ((property == null) ? "null" : property)); - } - if (property != null && property.trim().isEmpty()) { - PUBLIC_CANCER_STUDIES_GROUP = null; - } + private final String PUBLIC_CANCER_STUDIES_GROUP; +// @Value("${always_show_study_group:}") +// private void setPublicCancerStudiesGroup(String property) { +// PUBLIC_CANCER_STUDIES_GROUP = property; +// if (log.isDebugEnabled()) { +// log.debug("setPublicCancerStudiesGroup(), always_show_study_group = " + ((property == null) ? "null" : property)); +// } +// if (property != null && property.trim().isEmpty()) { +// PUBLIC_CANCER_STUDIES_GROUP = null; +// } +// } + + public CancerStudyPermissionEvaluator(final String appName, final String doFilterGroupsByAppName, final String alwaysShowCancerStudyGroup, final CacheMapUtil cacheMapUtil ) { + this.APP_NAME = appName; + this.FILTER_GROUPS_BY_APP_NAME = doFilterGroupsByAppName; + this.PUBLIC_CANCER_STUDIES_GROUP = alwaysShowCancerStudyGroup; + this.cacheMapUtil = cacheMapUtil; } - /** * Implementation of {@code PermissionEvaluator}. * this method handles the direct evaluation of user access to individual instances from the data model. @@ -127,7 +135,7 @@ public boolean hasPermission(Authentication authentication, Object targetDomainO // authentication will always have authorities. Object user = authentication.getPrincipal(); if (user != null) { - return hasAccessToCancerStudy(authentication, cancerStudy, (AccessLevel) permission); + return hasAccessToCancerStudy(authentication, cancerStudy, (AccessLevel) permission); } else { return false; } @@ -221,13 +229,12 @@ private CancerStudy getRelevantCancerStudyFromTarget(Object targetDomainObject) /** * Helper function to determine if given user has access to given cancer study. * - * @param authentication Spring Authentication object of the logged-in user. * @param cancerStudy cancer study to check for - * @param permission requested permission level (can be org.cbioportal.utils.security.AccessLevel.READ or org.cbioportal.utils.security.AccessLevel.LIST) + * @param authentication Spring Authentication of the logged-in user. * @return boolean */ private boolean hasAccessToCancerStudy(Authentication authentication, CancerStudy cancerStudy, AccessLevel permission) { - + // The 'list' permission is only requested by the /api/studies endpoint of StudyController. This permission is // requested by the Study Overview page when the portal instance is configured to show all studies (with non- // authorized study options greyed out), instead of only showing authorized studies. @@ -235,7 +242,7 @@ private boolean hasAccessToCancerStudy(Authentication authentication, CancerStud if (AccessLevel.LIST == permission) { return true; } - + Set grantedAuthorities = getGrantedAuthorities(authentication); String stableStudyID = cancerStudy.getCancerStudyIdentifier(); if (log.isDebugEnabled()) { @@ -356,7 +363,10 @@ private boolean hasAccessToSampleLists(Authentication authentication, Collection private Set getGrantedAuthorities(Authentication authentication) { String appName = getAppName().toUpperCase(); - Set allAuthorities = AuthorityUtils.authorityListToSet(authentication.getAuthorities()); + Set allAuthorities = AuthorityUtils.authorityListToSet(authentication.getAuthorities()) + .stream() + .map(authority -> authority.replaceAll("^ROLE_", "")) + .collect(Collectors.toSet()); Set grantedAuthorities = new HashSet<>(); if (filterGroupsByAppName()) { for (String au : allAuthorities) { diff --git a/src/main/java/org/cbioportal/security/CustomJwtGrantedAuthoritiesConverter.java b/src/main/java/org/cbioportal/security/CustomJwtGrantedAuthoritiesConverter.java new file mode 100644 index 00000000000..0d3f8f9b06c --- /dev/null +++ b/src/main/java/org/cbioportal/security/CustomJwtGrantedAuthoritiesConverter.java @@ -0,0 +1,37 @@ +package org.cbioportal.security; + +import org.cbioportal.security.util.GrantedAuthorityUtil; +import org.cbioportal.security.util.ClaimRoleExtractorUtil; +import org.springframework.core.convert.converter.Converter; +import org.springframework.security.core.GrantedAuthority; +import org.springframework.security.oauth2.jwt.Jwt; + +import java.util.Collection; +import java.util.Objects; + +/** + * Custom JWT GrantedAuthorities Converter to extract roles from JWT token. + * Claims should equal resource_access:clientId:roles + */ +public class CustomJwtGrantedAuthoritiesConverter implements Converter> { + private static final String DEFAULT_CLIENT_ID = "cbioportal"; + + private String jwtRolePathClientId; + + @Override + public Collection convert(Jwt jwt) { + return GrantedAuthorityUtil.generateGrantedAuthoritiesFromRoles(getAuthorities(jwt)); + } + + private Collection getAuthorities(Jwt jwt) { + return ClaimRoleExtractorUtil.extractClientRoles(this.getJwtRolePathClientId(), jwt.getClaims()); + } + + private String getJwtRolePathClientId() { + return Objects.isNull(jwtRolePathClientId) ? DEFAULT_CLIENT_ID : jwtRolePathClientId; + } + + public void setClientId(String clientId) { + this.jwtRolePathClientId = clientId; + } +} diff --git a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImpl.java b/src/main/java/org/cbioportal/security/OAuth2DataAccessTokenServiceImpl.java similarity index 78% rename from security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImpl.java rename to src/main/java/org/cbioportal/security/OAuth2DataAccessTokenServiceImpl.java index 3bc2f5156db..796028fe89f 100644 --- a/security/security-spring/src/main/java/org/cbioportal/security/spring/authentication/token/oauth2/OAuth2DataAccessTokenServiceImpl.java +++ b/src/main/java/org/cbioportal/security/OAuth2DataAccessTokenServiceImpl.java @@ -30,31 +30,31 @@ * along with this program. If not, see . */ -package org.cbioportal.security.spring.authentication.token.oauth2; +package org.cbioportal.security; +import com.fasterxml.jackson.databind.JsonNode; +import com.fasterxml.jackson.databind.ObjectMapper; import org.cbioportal.model.DataAccessToken; import org.cbioportal.service.DataAccessTokenService; -import org.codehaus.jackson.JsonNode; -import org.codehaus.jackson.map.ObjectMapper; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; +import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; import org.springframework.http.HttpEntity; import org.springframework.http.HttpHeaders; import org.springframework.http.ResponseEntity; import org.springframework.security.authentication.BadCredentialsException; import org.springframework.security.core.Authentication; -import org.springframework.security.jwt.Jwt; -import org.springframework.security.jwt.JwtHelper; +import org.springframework.stereotype.Component; import org.springframework.util.LinkedMultiValueMap; import org.springframework.util.MultiValueMap; import org.springframework.web.client.RestTemplate; -import java.io.IOException; import java.util.Date; import java.util.List; +@Component +@ConditionalOnProperty(value = "dat.method", havingValue = "oauth2") public class OAuth2DataAccessTokenServiceImpl implements DataAccessTokenService { - @Value("${dat.oauth2.issuer}") private String issuer; @@ -73,18 +73,13 @@ public class OAuth2DataAccessTokenServiceImpl implements DataAccessTokenService @Value("${dat.oauth2.redirectUri}") private String redirectUri; - @Autowired - private RestTemplate template; - - @Autowired - private JwtTokenVerifierBuilder jwtTokenVerifierBuilder; - @Override // request offline token from authentication server via back channel public DataAccessToken createDataAccessToken(final String accessCode) { HttpHeaders headers = new HttpHeaders(); - + RestTemplate template = new RestTemplate(); + MultiValueMap map = new LinkedMultiValueMap<>(); map.add("grant_type", "authorization_code"); map.add("code", accessCode); @@ -100,7 +95,7 @@ public DataAccessToken createDataAccessToken(final String accessCode) { String offlineToken = ""; try { JsonNode json = new ObjectMapper().readTree(response.getBody()); - offlineToken = json.get("refresh_token").asText(); + offlineToken = json.get("access_token").asText(); } catch (Exception e) { throw new BadCredentialsException("Offline token could not be retrieved using access_code: "+ accessCode ); } @@ -140,41 +135,12 @@ public void revokeDataAccessToken(final String token) { @Override public Boolean isValid(final String token) { - final String kid = JwtHelper.headers(token).get("kid"); - try { - - final Jwt tokenDecoded = JwtHelper.decodeAndVerify(token, jwtTokenVerifierBuilder.build(kid)); - final String claims = tokenDecoded.getClaims(); - final JsonNode claimsMap = new ObjectMapper().readTree(claims); - - hasValidIssuer(claimsMap); - hasValidClientId(claimsMap); - - } catch (Exception e) { - throw new BadCredentialsException("Token is not valid (wrong key, issuer, or audience)."); - } - return true; + return false; } @Override public String getUsername(final String token) { - - final Jwt tokenDecoded = JwtHelper.decode(token); - - final String claims = tokenDecoded.getClaims(); - JsonNode claimsMap; - try { - claimsMap = new ObjectMapper().readTree(claims); - } catch (IOException e) { - throw new BadCredentialsException("User name could not be found in offline token."); - } - - if (! claimsMap.has("sub")) { - throw new BadCredentialsException("User name could not be found in offline token."); - } - - String userName = claimsMap.get("sub").asText(); - return userName; + return "noop"; } @Override @@ -197,7 +163,7 @@ private void hasValidClientId(final JsonNode claimsMap) throws BadCredentialsExc @Override public Authentication createAuthenticationRequest(String offlineToken) { // validity of the offline token is checked by the OAuth2 authentication server - return new OAuth2BearerAuthenticationToken(offlineToken); + throw new UnsupportedOperationException("this implementation of (pure) Data Access Tokens does not allow retrieval of stored tokens"); } } diff --git a/src/main/java/org/cbioportal/security/config/MethodSecurityConfig.java b/src/main/java/org/cbioportal/security/config/MethodSecurityConfig.java new file mode 100644 index 00000000000..f347bf832e9 --- /dev/null +++ b/src/main/java/org/cbioportal/security/config/MethodSecurityConfig.java @@ -0,0 +1,42 @@ +package org.cbioportal.security.config; + +import org.cbioportal.persistence.cachemaputil.CacheMapUtil; +import org.cbioportal.security.CancerStudyPermissionEvaluator; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Qualifier; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.boot.autoconfigure.condition.ConditionalOnExpression; +import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.security.access.expression.method.DefaultMethodSecurityExpressionHandler; +import org.springframework.security.access.expression.method.MethodSecurityExpressionHandler; +import org.springframework.security.config.annotation.method.configuration.EnableMethodSecurity; + +@Configuration +@EnableMethodSecurity(prePostEnabled = true) +@ConditionalOnExpression("{'oauth2','saml','optional_oauth2'}.contains('${authenticate}')") +//TODO: Potentially Delete after import pipeline fixed +@ConditionalOnProperty(name = "security.method_authorization_enabled", havingValue = "true") +public class MethodSecurityConfig { + @Value("${app.name:}") + private String appName; + + @Value("${filter_groups_by_appname:true}") + private String doFilterGroupsByAppName; + + @Value("${always_show_study_group:}") + private String alwaysShowCancerStudyGroup; + + @Qualifier("staticRefCacheMapUtil") + @Autowired + private CacheMapUtil cacheMapUtil; + + @Bean + public MethodSecurityExpressionHandler createExpressionHandler() { + DefaultMethodSecurityExpressionHandler expressionHandler = + new DefaultMethodSecurityExpressionHandler(); + expressionHandler.setPermissionEvaluator(new CancerStudyPermissionEvaluator(appName, doFilterGroupsByAppName, alwaysShowCancerStudyGroup, cacheMapUtil)); + return expressionHandler; + } +} \ No newline at end of file diff --git a/src/main/java/org/cbioportal/security/config/NoSecurityConfig.java b/src/main/java/org/cbioportal/security/config/NoSecurityConfig.java new file mode 100644 index 00000000000..8e7741a81db --- /dev/null +++ b/src/main/java/org/cbioportal/security/config/NoSecurityConfig.java @@ -0,0 +1,24 @@ +package org.cbioportal.security.config; + +import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.security.config.annotation.web.builders.HttpSecurity; +import org.springframework.security.config.annotation.web.configuration.EnableWebSecurity; +import org.springframework.security.config.annotation.web.configurers.AbstractHttpConfigurer; +import org.springframework.security.web.SecurityFilterChain; + +@Configuration +@EnableWebSecurity +@ConditionalOnProperty(value = "authenticate", havingValue = "false", matchIfMissing = true) +public class NoSecurityConfig { + @Bean + public SecurityFilterChain filterChain(HttpSecurity http) throws Exception{ + return http.authorizeHttpRequests(auth -> auth + .requestMatchers("/").permitAll() + .anyRequest().permitAll() + ) + .csrf(AbstractHttpConfigurer::disable) + .build(); + } +} \ No newline at end of file diff --git a/src/main/java/org/cbioportal/security/config/OAuth2SecurityConfig.java b/src/main/java/org/cbioportal/security/config/OAuth2SecurityConfig.java new file mode 100644 index 00000000000..4a8801029a0 --- /dev/null +++ b/src/main/java/org/cbioportal/security/config/OAuth2SecurityConfig.java @@ -0,0 +1,110 @@ +package org.cbioportal.security.config; + +import org.cbioportal.security.CustomJwtGrantedAuthoritiesConverter; +import org.cbioportal.security.util.ClaimRoleExtractorUtil; +import org.cbioportal.security.util.GrantedAuthorityUtil; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; +import org.springframework.boot.autoconfigure.security.SecurityProperties; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.core.annotation.Order; +import org.springframework.http.HttpStatus; +import org.springframework.security.config.Customizer; +import org.springframework.security.config.annotation.web.builders.HttpSecurity; +import org.springframework.security.config.annotation.web.configuration.EnableWebSecurity; +import org.springframework.security.config.annotation.web.configurers.AbstractHttpConfigurer; +import org.springframework.security.config.annotation.web.configurers.oauth2.server.resource.OAuth2ResourceServerConfigurer; +import org.springframework.security.core.GrantedAuthority; +import org.springframework.security.core.authority.mapping.GrantedAuthoritiesMapper; +import org.springframework.security.oauth2.core.oidc.user.OidcUserAuthority; +import org.springframework.security.oauth2.core.user.OAuth2UserAuthority; +import org.springframework.security.oauth2.server.resource.authentication.JwtAuthenticationConverter; +import org.springframework.security.web.SecurityFilterChain; +import org.springframework.security.web.authentication.HttpStatusEntryPoint; +import org.springframework.security.web.util.matcher.AntPathRequestMatcher; + +import java.util.HashSet; +import java.util.Map; +import java.util.Objects; +import java.util.Set; + + +@Configuration +@EnableWebSecurity +// add new chain after api-filter chain (at position -2), but before the default fallback chain +@Order(SecurityProperties.BASIC_AUTH_ORDER - 1) +public class OAuth2SecurityConfig { + + + @Value("${spring.security.oauth2.roles-path.client-id:}") + private String clientId; + + @Value("${spring.security.oauth2.resourceserver.jwt.issuer-uri:}") + private String jwtResourceServerUri; + + @Bean + @ConditionalOnProperty(value = "authenticate", havingValue = "oauth2") + public SecurityFilterChain oAuth2filterChain(HttpSecurity http) throws Exception { + + http.authorizeHttpRequests(auth -> + auth.requestMatchers("/api/health", "/login", "/images/**").permitAll() + .anyRequest().authenticated()) + .oauth2Login(oauth -> oauth.loginPage("/login")) + .logout((logout) -> logout.logoutSuccessUrl("/login?logout_success")) + .exceptionHandling(eh -> + eh.defaultAuthenticationEntryPointFor(new HttpStatusEntryPoint(HttpStatus.UNAUTHORIZED), AntPathRequestMatcher.antMatcher("/api/**"))) + .csrf(AbstractHttpConfigurer::disable); + + if(!Objects.isNull(this.jwtResourceServerUri) && !this.jwtResourceServerUri.isEmpty()) { + http.oauth2ResourceServer(OAuth2ResourceServerConfigurer::jwt); + } + return http.build(); + } + + @Bean + @ConditionalOnProperty(value = "authenticate", havingValue = "optional_oauth2") + public SecurityFilterChain optionalOAuth2filterChain(HttpSecurity http) throws Exception { + return http + .oauth2Login(oauth -> oauth.loginPage("/login")) + .authorizeHttpRequests(auth -> auth + .requestMatchers("/").permitAll() + .anyRequest().permitAll()) + .csrf(AbstractHttpConfigurer::disable) + .logout((logout) -> logout.logoutSuccessUrl("/")) + .build(); + } + + @Bean + public GrantedAuthoritiesMapper userAuthoritiesMapper() { + return (authorities) -> { + Set mappedAuthorities = new HashSet<>(); + + authorities.forEach(authority -> { + Map claims = null; + if (authority instanceof OidcUserAuthority oidcUserAuthority && !Objects.isNull(oidcUserAuthority.getUserInfo())) { + claims = oidcUserAuthority.getUserInfo().getClaims(); + } else if (authority instanceof OAuth2UserAuthority oauth2UserAuthority) { + claims = oauth2UserAuthority.getAttributes(); + } + if(!Objects.isNull(claims)) { + var roles = ClaimRoleExtractorUtil.extractClientRoles(this.clientId, claims); + mappedAuthorities.addAll(GrantedAuthorityUtil.generateGrantedAuthoritiesFromRoles(roles)); + } + }); + + return mappedAuthorities; + }; + } + + @Bean + public JwtAuthenticationConverter jwtAuthenticationConverter() { + CustomJwtGrantedAuthoritiesConverter grantedAuthoritiesConverter = new CustomJwtGrantedAuthoritiesConverter(); + grantedAuthoritiesConverter.setClientId(this.clientId); + + JwtAuthenticationConverter jwtAuthenticationConverter = new JwtAuthenticationConverter(); + jwtAuthenticationConverter.setJwtGrantedAuthoritiesConverter(grantedAuthoritiesConverter); + return jwtAuthenticationConverter; + } + +} diff --git a/src/main/java/org/cbioportal/security/config/Saml2SecurityConfig.java b/src/main/java/org/cbioportal/security/config/Saml2SecurityConfig.java new file mode 100644 index 00000000000..a7fada979b7 --- /dev/null +++ b/src/main/java/org/cbioportal/security/config/Saml2SecurityConfig.java @@ -0,0 +1,65 @@ +package org.cbioportal.security.config; + +import org.cbioportal.security.util.GrantedAuthorityUtil; +import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.core.convert.converter.Converter; +import org.springframework.http.HttpStatus; +import org.springframework.security.authentication.ProviderManager; +import org.springframework.security.config.annotation.web.builders.HttpSecurity; +import org.springframework.security.config.annotation.web.configuration.EnableWebSecurity; +import org.springframework.security.config.annotation.web.configurers.AbstractHttpConfigurer; +import org.springframework.security.core.GrantedAuthority; +import org.springframework.security.saml2.provider.service.authentication.OpenSaml4AuthenticationProvider; +import org.springframework.security.saml2.provider.service.authentication.Saml2AuthenticatedPrincipal; +import org.springframework.security.saml2.provider.service.authentication.Saml2Authentication; +import org.springframework.security.web.SecurityFilterChain; +import org.springframework.security.web.authentication.HttpStatusEntryPoint; +import org.springframework.security.web.util.matcher.AntPathRequestMatcher; + +import java.util.Collection; +import java.util.HashSet; +import java.util.Objects; +import java.util.Set; + +@Configuration +@EnableWebSecurity +public class Saml2SecurityConfig { + @Bean + @ConditionalOnProperty(value = "authenticate", havingValue = "saml") + public SecurityFilterChain samlFilterChain(HttpSecurity http) throws Exception { + OpenSaml4AuthenticationProvider authenticationProvider = new OpenSaml4AuthenticationProvider(); + authenticationProvider.setResponseAuthenticationConverter(rolesConverter()); + + return http.authorizeHttpRequests(auth -> + auth.requestMatchers("/api/health", "/login", "/images/**" ).permitAll() + .anyRequest().authenticated()) + .exceptionHandling(eh -> + eh.defaultAuthenticationEntryPointFor(new HttpStatusEntryPoint(HttpStatus.UNAUTHORIZED), AntPathRequestMatcher.antMatcher("/api/**"))) + .saml2Login(saml2 -> saml2 + .authenticationManager(new ProviderManager(authenticationProvider))) + .logout(logout -> logout.logoutSuccessUrl("/login?logout_success")) + .csrf(AbstractHttpConfigurer::disable) + .build(); + } + + private Converter rolesConverter() { + + Converter delegate = + OpenSaml4AuthenticationProvider.createDefaultResponseAuthenticationConverter(); + + return (responseToken) -> { + Saml2Authentication authentication = delegate.convert(responseToken); + var principal = (Saml2AuthenticatedPrincipal) Objects.requireNonNull(authentication).getPrincipal(); + Collection roles = principal.getAttribute("Role"); + Set mappedAuthorities = new HashSet<>(); + if (!Objects.isNull(roles)) { + mappedAuthorities.addAll(GrantedAuthorityUtil.generateGrantedAuthoritiesFromRoles(roles)); + } else { + mappedAuthorities.addAll(authentication.getAuthorities()); + } + return new Saml2Authentication(principal, authentication.getSaml2Response(), mappedAuthorities); + }; + } +} diff --git a/src/main/java/org/cbioportal/security/util/ClaimRoleExtractorUtil.java b/src/main/java/org/cbioportal/security/util/ClaimRoleExtractorUtil.java new file mode 100644 index 00000000000..d6ea2a59c21 --- /dev/null +++ b/src/main/java/org/cbioportal/security/util/ClaimRoleExtractorUtil.java @@ -0,0 +1,28 @@ +package org.cbioportal.security.util; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Collection; +import java.util.Collections; +import java.util.Map; + +public class ClaimRoleExtractorUtil { + private static final Logger log = LoggerFactory.getLogger(ClaimRoleExtractorUtil.class); + private static final String CLAIM_RESOURCE_ACCESS = "resource_access"; + private static final String CLAIM_ROLES = "roles"; + + public static Collection extractClientRoles(final String clientId, final Map claims) { + try { + if(claims.containsKey(CLAIM_RESOURCE_ACCESS)) { + var realmAccess = (Map) claims.get(CLAIM_RESOURCE_ACCESS); + var clientIdAccess = (Map) realmAccess.get(clientId); + return (clientIdAccess.containsKey(CLAIM_ROLES)) ? (Collection) clientIdAccess.get(CLAIM_ROLES) : Collections.emptyList(); + } + } catch (Exception e) { + log.error("Error Grabbing Client Roles from OIDC User Info: Realm roles must follow the convention resource_access:client_id:roles"); + } + return Collections.emptyList(); + } + +} diff --git a/src/main/java/org/cbioportal/security/util/GrantedAuthorityUtil.java b/src/main/java/org/cbioportal/security/util/GrantedAuthorityUtil.java new file mode 100644 index 00000000000..372cd12f13b --- /dev/null +++ b/src/main/java/org/cbioportal/security/util/GrantedAuthorityUtil.java @@ -0,0 +1,14 @@ +package org.cbioportal.security.util; + +import org.springframework.security.core.GrantedAuthority; +import org.springframework.security.core.authority.SimpleGrantedAuthority; + +import java.util.Collection; +import java.util.stream.Collectors; + +public class GrantedAuthorityUtil { + private static final String PREFIX_RESOURCE_ROLE = "ROLE_"; + public static Collection generateGrantedAuthoritiesFromRoles(Collection roles) { + return roles.stream().map(role -> new SimpleGrantedAuthority(PREFIX_RESOURCE_ROLE + role)).collect(Collectors.toList()); + } +} diff --git a/service/src/main/java/org/cbioportal/service/AlterationCountService.java b/src/main/java/org/cbioportal/service/AlterationCountService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/AlterationCountService.java rename to src/main/java/org/cbioportal/service/AlterationCountService.java diff --git a/service/src/main/java/org/cbioportal/service/AlterationDriverAnnotationService.java b/src/main/java/org/cbioportal/service/AlterationDriverAnnotationService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/AlterationDriverAnnotationService.java rename to src/main/java/org/cbioportal/service/AlterationDriverAnnotationService.java diff --git a/service/src/main/java/org/cbioportal/service/AlterationEnrichmentService.java b/src/main/java/org/cbioportal/service/AlterationEnrichmentService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/AlterationEnrichmentService.java rename to src/main/java/org/cbioportal/service/AlterationEnrichmentService.java diff --git a/service/src/main/java/org/cbioportal/service/AttributeByStudyService.java b/src/main/java/org/cbioportal/service/AttributeByStudyService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/AttributeByStudyService.java rename to src/main/java/org/cbioportal/service/AttributeByStudyService.java diff --git a/service/src/main/java/org/cbioportal/service/CacheService.java b/src/main/java/org/cbioportal/service/CacheService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/CacheService.java rename to src/main/java/org/cbioportal/service/CacheService.java diff --git a/service/src/main/java/org/cbioportal/service/CacheStatisticsService.java b/src/main/java/org/cbioportal/service/CacheStatisticsService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/CacheStatisticsService.java rename to src/main/java/org/cbioportal/service/CacheStatisticsService.java diff --git a/service/src/main/java/org/cbioportal/service/CancerTypeService.java b/src/main/java/org/cbioportal/service/CancerTypeService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/CancerTypeService.java rename to src/main/java/org/cbioportal/service/CancerTypeService.java diff --git a/service/src/main/java/org/cbioportal/service/ClinicalAttributeService.java b/src/main/java/org/cbioportal/service/ClinicalAttributeService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ClinicalAttributeService.java rename to src/main/java/org/cbioportal/service/ClinicalAttributeService.java diff --git a/service/src/main/java/org/cbioportal/service/ClinicalDataService.java b/src/main/java/org/cbioportal/service/ClinicalDataService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ClinicalDataService.java rename to src/main/java/org/cbioportal/service/ClinicalDataService.java diff --git a/service/src/main/java/org/cbioportal/service/ClinicalEventService.java b/src/main/java/org/cbioportal/service/ClinicalEventService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ClinicalEventService.java rename to src/main/java/org/cbioportal/service/ClinicalEventService.java diff --git a/service/src/main/java/org/cbioportal/service/CoExpressionService.java b/src/main/java/org/cbioportal/service/CoExpressionService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/CoExpressionService.java rename to src/main/java/org/cbioportal/service/CoExpressionService.java diff --git a/service/src/main/java/org/cbioportal/service/CopyNumberSegmentService.java b/src/main/java/org/cbioportal/service/CopyNumberSegmentService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/CopyNumberSegmentService.java rename to src/main/java/org/cbioportal/service/CopyNumberSegmentService.java diff --git a/service/src/main/java/org/cbioportal/service/CosmicCountService.java b/src/main/java/org/cbioportal/service/CosmicCountService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/CosmicCountService.java rename to src/main/java/org/cbioportal/service/CosmicCountService.java diff --git a/service/src/main/java/org/cbioportal/service/CustomDataService.java b/src/main/java/org/cbioportal/service/CustomDataService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/CustomDataService.java rename to src/main/java/org/cbioportal/service/CustomDataService.java diff --git a/service/src/main/java/org/cbioportal/service/DataAccessTokenService.java b/src/main/java/org/cbioportal/service/DataAccessTokenService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/DataAccessTokenService.java rename to src/main/java/org/cbioportal/service/DataAccessTokenService.java diff --git a/service/src/main/java/org/cbioportal/service/DiscreteCopyNumberService.java b/src/main/java/org/cbioportal/service/DiscreteCopyNumberService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/DiscreteCopyNumberService.java rename to src/main/java/org/cbioportal/service/DiscreteCopyNumberService.java diff --git a/service/src/main/java/org/cbioportal/service/ExpressionEnrichmentService.java b/src/main/java/org/cbioportal/service/ExpressionEnrichmentService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ExpressionEnrichmentService.java rename to src/main/java/org/cbioportal/service/ExpressionEnrichmentService.java diff --git a/src/main/java/org/cbioportal/service/FrontendPropertiesService.java b/src/main/java/org/cbioportal/service/FrontendPropertiesService.java new file mode 100644 index 00000000000..a965eaf40d1 --- /dev/null +++ b/src/main/java/org/cbioportal/service/FrontendPropertiesService.java @@ -0,0 +1,10 @@ +package org.cbioportal.service; + +import java.util.Map; + +public interface FrontendPropertiesService { + + String getFrontendProperty(FrontendPropertiesServiceImpl.FrontendProperty property); + Map getFrontendProperties(); + +} diff --git a/src/main/java/org/cbioportal/service/FrontendPropertiesServiceImpl.java b/src/main/java/org/cbioportal/service/FrontendPropertiesServiceImpl.java new file mode 100644 index 00000000000..151f016d355 --- /dev/null +++ b/src/main/java/org/cbioportal/service/FrontendPropertiesServiceImpl.java @@ -0,0 +1,345 @@ +package org.cbioportal.service; + +import java.io.BufferedReader; +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.Paths; +import java.util.Arrays; +import java.util.HashMap; +import java.util.Map; +import java.util.stream.Collectors; + +import jakarta.annotation.PostConstruct; +import org.cbioportal.service.util.MskWholeSlideViewerTokenGenerator; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.core.env.Environment; +import org.springframework.security.core.Authentication; +import org.springframework.security.core.context.SecurityContextHolder; +import org.springframework.stereotype.Service; + + +// Class adapted from legacy config_service.jsp and GlobalProperties.java +@Service +public class FrontendPropertiesServiceImpl implements FrontendPropertiesService { + + private final Logger log = LoggerFactory.getLogger(FrontendPropertiesServiceImpl.class); + + // This enum holds properties exposed to the frontend reactapp. + // Format: ("", "") + // There are some properties that require processing before being exposed to the frontend. + public enum FrontendProperty { + dat_method("dat.method", null), + oncoprint_custom_driver_annotation_binary_menu_label( + "oncoprint.custom_driver_annotation.binary.menu_label", null), + disabled_tabs("disabled_tabs", null), + civic_url("civic.url", null), + oncoprint_custom_driver_annotation_binary_default( + "oncoprint.custom_driver_annotation.binary.default", null), + oncoprint_oncokb_default("oncoprint.oncokb.default", null), + oncoprint_hotspots_default("oncoprint.hotspots.default", null), + oncoprint_clustered_default("oncoprint.clustered.default", null), + oncokb_merge_icons_by_default("oncokb.merge_icons_by_default", null), + oncoprint_clinical_tracks_config_json("oncoprint.clinical_tracks.config_json", null), + genomenexus_url("genomenexus.url", null), + genomenexus_url_grch38("genomenexus.url.grch38", null), + genomenexus_isoform_override_source("genomenexus.isoform_override_source", null), + google_analytics_profile_id("google_analytics_profile_id", null), + analytics_report_url("analytics_report_url", null), + oncoprint_hide_vus_default("oncoprint.hide_vus.default", null), + mycancergenome_show("mycancergenome.show", null), + oncokb_public_api_url("oncokb.public_api.url", null), + digitalslidearchive_iframe_url("digitalslidearchive.iframe.url", null), + digitalslidearchive_meta_url("digitalslidearchive.meta.url", null), + mdacc_heatmap_meta_url("mdacc.heatmap.meta.url", null), + mdacc_heatmap_patient_url("mdacc.heatmap.patient.url", null), + mdacc_heatmap_study_meta_url("mdacc.heatmap.study.meta.url", null), + mdacc_heatmap_study_url("mdacc.heatmap.study.url", null), + show_mdacc_heatmap("show.mdacc.heatmap", null), + oncoprint_custom_driver_annotation_tiers_menu_label( + "oncoprint.custom_driver_annotation.tiers.menu_label", null), + patient_view_use_legacy_timeline("patient_view.use_legacy_timeline", null), + installation_map_url("installation_map_url", null), + priority_studies("priority_studies", null), + show_hotspot("show.hotspot", null), + show_oncokb("show.oncokb", null), + show_civic("show.civic", null), + show_genomenexus("show.genomenexus", null), + show_genomenexus_annotation_sources("show.genomenexus.annotation_sources", null), + show_mutation_mappert_tool_grch38("show.mutation_mappert_tool.grch38", null), + show_transcript_dropdown("show.transcript_dropdown", null), + show_signal("show.signal", null), + show_cbioportal("show.cbioportal", null), + show_cosmic("show.cosmic", null), + show_ndex("show.ndex", null), + survival_show_p_q_values_in_survival_type_table( + "survival.show_p_q_values_in_survival_type_table", null), + survival_min_group_threshold("survival.min_group_threshold", null), + survival_initial_x_axis_limit("survival.initial_x_axis_limit", null), + skin_documentation_about("skin.documentation.about", null), + skin_documentation_baseurl("skin.documentation.baseurl", null), + skin_example_study_queries("skin.example_study_queries", null), + skin_blurb("skin.blurb", null), + skin_custom_header_tabs("skin.custom_header_tabs", null), + skin_data_sets_footer("skin.data_sets_footer", null), + skin_data_sets_header("skin.data_sets_header", null), + skin_documentation_markdown("skin.documentation.markdown", null), + skin_email_contact("skin.email_contact", null), + skin_examples_right_column_html("skin.examples_right_column_html", null), + skin_documentation_faq("skin.documentation.faq", null), + skin_footer("skin.footer", null), + skin_footer_show_dev("skin.footer_show_dev", null), + skin_login_contact_html("skin.login.contact_html", null), + skin_login_saml_registration_html("skin.login.saml.registration_html", null), + skin_documentation_news("skin.documentation.news", null), + skin_documentation_oql("skin.documentation.oql", null), + skin_query_max_tree_depth("skin.query.max_tree_depth", null), + skin_quick_select_buttons("skin.quick_select_buttons", null), + skin_right_logo("skin.right_logo", null), + skin_left_logo("skin.left_logo", null), + skin_right_nav_show_data_sets("skin.right_nav.show_data_sets", null), + skin_right_nav_show_examples("skin.right_nav.show_examples", null), + skin_right_nav_show_testimonials("skin.right_nav.show_testimonials", null), + skin_right_nav_show_whats_new("skin.right_nav.show_whats_new", null), + skin_right_nav_show_twitter("skin.right_nav.show_twitter", null), + skin_right_nav_whats_new_blurb("skin.right_nav.whats_new_blurb", null), + skin_show_about_tab("skin.show_about_tab", null), + skin_show_data_tab("skin.show_data_tab", null), + skin_show_faqs_tab("skin.show_faqs_tab", null), + skin_show_news_tab("skin.show_news_tab", null), + skin_show_r_matlab_tab("skin.show_r_matlab_tab", null), + skin_show_tools_tab("skin.show_tools_tab", null), + skin_show_tutorials_tab("skin.show_tutorials_tab", null), + skin_show_web_api_tab("skin.show_web_api_tab", null), + skin_show_tweet_button("skin.show_tweet_button", null), + skin_show_study_help_button("skin.show_study_help_button", null), + skin_patientview_filter_genes_profiled_all_samples( + "skin.patientview.filter_genes_profiled_all_samples", null), + skin_patientview_show_mskcc_slide_viewer("skin.patientview.show_mskcc_slide_viewer", null), + skin_show_settings_menu("skin.show_settings_menu", null), + skin_hide_logout_button("skin.hide_logout_button", null), + quick_search_enabled("quick_search.enabled", null), + default_cross_cancer_study_session_id("default_cross_cancer_study_session_id", null), + default_cross_cancer_study_list("default_cross_cancer_study_list", null), + default_cross_cancer_study_list_name("default_cross_cancer_study_list_name", null), + skin_description("skin.description", null), + skin_title("skin.title", null), + skin_authorization_message("skin.authorization_message", null), + session_url_length_threshold("session.url_length_threshold", null), + bitly_api_key("bitly.api_key", null), + bitly_user("bitly.user", null), + bitly_access_token("bitly.access.token", null), + oncoprint_custom_driver_annotation_tiers_default( + "oncoprint.custom_driver_annotation.tiers.default", null), + ensembl_transcript_url("ensembl.transcript_url", null), + enable_persistent_cache("enable_persistent_cache", null), + enable_request_body_gzip_compression("enable_request_body_gzip_compression", null), + query_product_limit("query_product_limit", null), + skin_show_gsva("skin.show_gsva", null), + saml_idp_metadata_entityid("saml.idp.metadata.entityid", null), + saml_logout_local("saml.logout.local", null), + skin_citation_rule_text("skin.citation_rule_text", null), + skin_geneset_hierarchy_default_p_value("skin.geneset_hierarchy.default_p_value", null), + skin_geneset_hierarchy_default_gsva_score("skin.geneset_hierarchy.default_gsva_score", null), + app_version("app.version", null), + frontendSentryEndpoint("sentryjs.frontend_project_endpoint", null), + + // These properties require additional processing. + // Names refer to the property that requires processing. + frontendConfigOverride("frontend.config", null), + query_sets_of_genes("querypage.setsofgenes.location", null), + authenticationMethod("authenticate", "false"), + mskWholeSlideViewerToken("msk.whole.slide.viewer.secret.key", null), + oncoprintOncoKbHotspotsDefault("oncoprint.oncokb_hotspots.default", "true"), + oncoKbTokenDefined("oncokb.token", ""), + sessionServiceEnabled("session.service.url", ""), + frontendUrl("frontend.url", null), + skin_hide_download_controls("skin.hide_download_controls", "show"), + study_download_url("study_download_url", "https://cbioportal-datahub.s3.amazonaws.com/"), + enable_cross_study_expression("enable_cross_study_expression", ""), + studyview_max_samples_selected("studyview.max_samples_selected", null), + skin_home_page_show_reference_genome("skin.home_page.show_reference_genome", null), + vaf_sequential_mode_default("vaf.sequential_mode.default", null), + vaf_log_scale_default("vaf.log_scale.default", null), + skin_patient_view_custom_sample_type_colors_json("skin.patient_view.custom_sample_type_colors_json", null), + skin_study_view_show_sv_table("skin.study_view.show_sv_table", null), + skin_home_page_show_unauthorized_studies("skin.home_page.show_unauthorized_studies", null), + skin_home_page_unauthorized_studies_global_message("skin.home_page.unauthorized_studies_global_message", null), + skin_mutation_table_namespace_column_show_by_default("skin.mutation_table.namespace_column.show_by_default", null), + skin_geneset_hierarchy_collapse_by_default("skin.geneset_hierarchy.collapse_by_default", null), + skin_patient_view_mutation_table_columns_show_on_init("skin.patient_view.mutation_table.columns.show_on_init", null), + skin_results_view_mutation_table_columns_show_on_init("skin.results_view.mutation_table.columns.show_on_init", null), + skin_patient_view_copy_number_table_columns_show_on_init("skin.patient_view.copy_number_table.columns.show_on_init", null), + skin_patient_view_structural_variant_table_columns_show_on_init("skin.patient_view.structural_variant_table.columns.show_on_init", null), + enable_treatment_groups("enable_treatment_groups", null), + comparison_categorical_na_values("comparison.categorical_na_values", null), + clinical_attribute_product_limit("clinical_attribute_product_limit", null), + skin_right_nav_show_web_tours("skin.right_nav.show_web_tours", "false"); + + private final String propertyName; + private final String defaultValue; + + FrontendProperty(String name, String defaultValue) { + this.propertyName = name; + this.defaultValue = defaultValue; + } + + public String getPropertyName() { + return propertyName; + } + + public String getFrontendName() { + return this.name(); + } + + public String getDefaultValue() { + return defaultValue; + } + } + + @Autowired + private Environment env; + + private static Map serverConfigProperties; + + @PostConstruct + public void init() { + serverConfigProperties = Arrays.stream(FrontendProperty.values()) + // do not use toMap here because null values are problematic + .collect( + HashMap::new, + (out, property) -> out.put(property.getFrontendName(), getPropertyValue(property)), + HashMap::putAll + ); + } + + private String getPropertyValue(FrontendProperty property) { + String propertyValue = env.getProperty(property.getPropertyName(), property.getDefaultValue()); + if (propertyValue != null) + propertyValue = propertyValue.trim(); + switch (property.getFrontendName()) { + // First, add properties that require pre-processing. + case "frontendConfigOverride": + case "query_sets_of_genes": + case "skin.patient_view.custom_sample_type_colors_json": + case "oncoprint.clinical_tracks.config_json": + return readFile(propertyValue); + case "mskWholeSlideViewerToken": + return getMskWholeSlideViewerToken(propertyValue); + case "oncoprintOncoKbHotspotsDefault": + return enableOncoKBandHotspotsParamValue(propertyValue); + case "oncoKbTokenDefined": + case "sessionServiceEnabled": + return String.valueOf(!propertyValue.isEmpty()); + case "frontendUrl": + return getFrontendUrl(propertyValue); + // For others, just return the value in the properties file. + default: + return propertyValue; + } + } + + private String getMskWholeSlideViewerToken(String secretKey) { + // this token is for the msk portal + // the token is generated based on users' timestamp to let the slide viewer know whether the token is expired and then decide whether to allow the user to login the viewer + // every time when we refresh the page or goto the new page, a new token should be generated + Authentication authentication = SecurityContextHolder.getContext().getAuthentication(); + String timeStamp = String.valueOf(System.currentTimeMillis()); + + if (authentication != null && authentication.isAuthenticated() && secretKey != null && + !secretKey.isEmpty()) { + return "{ \"token\":\"" + MskWholeSlideViewerTokenGenerator.generateTokenByHmacSHA256( + authentication.getName(), secretKey, timeStamp) + "\", \"time\":\"" + timeStamp + + "\"}"; + } else { + return null; + } + } + + private String enableOncoKBandHotspots(String enableOncoKBandHotspots) { + if (enableOncoKBandHotspots.equalsIgnoreCase("custom")) { + return "custom"; + } else if (enableOncoKBandHotspots.equalsIgnoreCase("false")) { + return "false"; + } + return "true"; + } + + private String enableOncoKBandHotspotsParamValue(String enableOncoKBandHotspots) { + switch (enableOncoKBandHotspots(enableOncoKBandHotspots)) { + case "true": + return "undefined"; + case "false": + return "\"disable\""; + case "custom": + return "\"custom\""; + } + return null; + } + + public String getFrontendProperty(FrontendProperty property) { + return serverConfigProperties.get(property.getFrontendName()); + } + + public Map getFrontendProperties() { + // Make sure that requests work on individual instances of this data. + return cloneProperties(); + } + + private Map cloneProperties() { + return serverConfigProperties.entrySet().stream() + .collect( + HashMap::new, + (out, entry) -> out.put(entry.getKey(), entry.getValue()), + HashMap::putAll + ); + } + + private String readFile(String fileName) { + if (fileName != null && !fileName.isEmpty()) { + try (BufferedReader br = Files.newBufferedReader(Paths.get(fileName))) { + return br.lines().map(String::trim).collect(Collectors.joining("")); + } catch (Exception e) { + log.error("Error reading frontend config file: {}", e.getMessage()); + return null; + } + } + return null; + } + + public String getFrontendUrl(String propertyValue) { + String frontendUrlRuntime = env.getProperty("frontend.url.runtime", ""); + if (frontendUrlRuntime.length() > 0) { + try { + String url = parseUrl(Files.readString(Paths.get(frontendUrlRuntime)).replaceAll("[\\r\\n]+", "")); + if (log.isInfoEnabled()) { + log.info("Using frontend from {}: {}", frontendUrlRuntime, url); + } + return url; + } catch (IOException e) { + // error reading file, use existing frontendUrl + if (log.isErrorEnabled()) { + log.error("Can't read frontend.url.runtime: {}", frontendUrlRuntime); + } + } + } + return propertyValue; + } + + /* + * Trim whitespace of url and append / if it does not exist. Return empty + * string otherwise. + */ + public static String parseUrl(String url) { + String rv = ""; + if (url != null && !url.isEmpty()) { + rv = url.trim(); + if (!rv.endsWith("/")) { + rv += "/"; + } + } + return rv; + } + +} diff --git a/service/src/main/java/org/cbioportal/service/GeneMemoizerService.java b/src/main/java/org/cbioportal/service/GeneMemoizerService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GeneMemoizerService.java rename to src/main/java/org/cbioportal/service/GeneMemoizerService.java diff --git a/service/src/main/java/org/cbioportal/service/GenePanelService.java b/src/main/java/org/cbioportal/service/GenePanelService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GenePanelService.java rename to src/main/java/org/cbioportal/service/GenePanelService.java diff --git a/service/src/main/java/org/cbioportal/service/GeneService.java b/src/main/java/org/cbioportal/service/GeneService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GeneService.java rename to src/main/java/org/cbioportal/service/GeneService.java diff --git a/service/src/main/java/org/cbioportal/service/GenericAssayService.java b/src/main/java/org/cbioportal/service/GenericAssayService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GenericAssayService.java rename to src/main/java/org/cbioportal/service/GenericAssayService.java diff --git a/service/src/main/java/org/cbioportal/service/GenesetCorrelationService.java b/src/main/java/org/cbioportal/service/GenesetCorrelationService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GenesetCorrelationService.java rename to src/main/java/org/cbioportal/service/GenesetCorrelationService.java diff --git a/service/src/main/java/org/cbioportal/service/GenesetDataService.java b/src/main/java/org/cbioportal/service/GenesetDataService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GenesetDataService.java rename to src/main/java/org/cbioportal/service/GenesetDataService.java diff --git a/service/src/main/java/org/cbioportal/service/GenesetHierarchyService.java b/src/main/java/org/cbioportal/service/GenesetHierarchyService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GenesetHierarchyService.java rename to src/main/java/org/cbioportal/service/GenesetHierarchyService.java diff --git a/service/src/main/java/org/cbioportal/service/GenesetService.java b/src/main/java/org/cbioportal/service/GenesetService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/GenesetService.java rename to src/main/java/org/cbioportal/service/GenesetService.java diff --git a/service/src/main/java/org/cbioportal/service/MolecularDataService.java b/src/main/java/org/cbioportal/service/MolecularDataService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/MolecularDataService.java rename to src/main/java/org/cbioportal/service/MolecularDataService.java diff --git a/service/src/main/java/org/cbioportal/service/MolecularProfileService.java b/src/main/java/org/cbioportal/service/MolecularProfileService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/MolecularProfileService.java rename to src/main/java/org/cbioportal/service/MolecularProfileService.java diff --git a/service/src/main/java/org/cbioportal/service/MrnaPercentileService.java b/src/main/java/org/cbioportal/service/MrnaPercentileService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/MrnaPercentileService.java rename to src/main/java/org/cbioportal/service/MrnaPercentileService.java diff --git a/service/src/main/java/org/cbioportal/service/MutationService.java b/src/main/java/org/cbioportal/service/MutationService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/MutationService.java rename to src/main/java/org/cbioportal/service/MutationService.java diff --git a/service/src/main/java/org/cbioportal/service/MutationSpectrumService.java b/src/main/java/org/cbioportal/service/MutationSpectrumService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/MutationSpectrumService.java rename to src/main/java/org/cbioportal/service/MutationSpectrumService.java diff --git a/service/src/main/java/org/cbioportal/service/PatientService.java b/src/main/java/org/cbioportal/service/PatientService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/PatientService.java rename to src/main/java/org/cbioportal/service/PatientService.java diff --git a/service/src/main/java/org/cbioportal/service/ReadPermissionService.java b/src/main/java/org/cbioportal/service/ReadPermissionService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ReadPermissionService.java rename to src/main/java/org/cbioportal/service/ReadPermissionService.java diff --git a/service/src/main/java/org/cbioportal/service/ReferenceGenomeGeneService.java b/src/main/java/org/cbioportal/service/ReferenceGenomeGeneService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ReferenceGenomeGeneService.java rename to src/main/java/org/cbioportal/service/ReferenceGenomeGeneService.java diff --git a/service/src/main/java/org/cbioportal/service/ResourceDataService.java b/src/main/java/org/cbioportal/service/ResourceDataService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ResourceDataService.java rename to src/main/java/org/cbioportal/service/ResourceDataService.java diff --git a/service/src/main/java/org/cbioportal/service/ResourceDefinitionService.java b/src/main/java/org/cbioportal/service/ResourceDefinitionService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ResourceDefinitionService.java rename to src/main/java/org/cbioportal/service/ResourceDefinitionService.java diff --git a/service/src/main/java/org/cbioportal/service/SampleListService.java b/src/main/java/org/cbioportal/service/SampleListService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/SampleListService.java rename to src/main/java/org/cbioportal/service/SampleListService.java diff --git a/service/src/main/java/org/cbioportal/service/SampleService.java b/src/main/java/org/cbioportal/service/SampleService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/SampleService.java rename to src/main/java/org/cbioportal/service/SampleService.java diff --git a/service/src/main/java/org/cbioportal/service/ServerStatusService.java b/src/main/java/org/cbioportal/service/ServerStatusService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ServerStatusService.java rename to src/main/java/org/cbioportal/service/ServerStatusService.java diff --git a/service/src/main/java/org/cbioportal/service/SignificantCopyNumberRegionService.java b/src/main/java/org/cbioportal/service/SignificantCopyNumberRegionService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/SignificantCopyNumberRegionService.java rename to src/main/java/org/cbioportal/service/SignificantCopyNumberRegionService.java diff --git a/service/src/main/java/org/cbioportal/service/SignificantlyMutatedGeneService.java b/src/main/java/org/cbioportal/service/SignificantlyMutatedGeneService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/SignificantlyMutatedGeneService.java rename to src/main/java/org/cbioportal/service/SignificantlyMutatedGeneService.java diff --git a/service/src/main/java/org/cbioportal/service/StaticDataTimestampService.java b/src/main/java/org/cbioportal/service/StaticDataTimestampService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/StaticDataTimestampService.java rename to src/main/java/org/cbioportal/service/StaticDataTimestampService.java diff --git a/service/src/main/java/org/cbioportal/service/StructuralVariantService.java b/src/main/java/org/cbioportal/service/StructuralVariantService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/StructuralVariantService.java rename to src/main/java/org/cbioportal/service/StructuralVariantService.java diff --git a/service/src/main/java/org/cbioportal/service/StudyService.java b/src/main/java/org/cbioportal/service/StudyService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/StudyService.java rename to src/main/java/org/cbioportal/service/StudyService.java diff --git a/service/src/main/java/org/cbioportal/service/StudyViewService.java b/src/main/java/org/cbioportal/service/StudyViewService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/StudyViewService.java rename to src/main/java/org/cbioportal/service/StudyViewService.java diff --git a/service/src/main/java/org/cbioportal/service/TreatmentService.java b/src/main/java/org/cbioportal/service/TreatmentService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/TreatmentService.java rename to src/main/java/org/cbioportal/service/TreatmentService.java diff --git a/service/src/main/java/org/cbioportal/service/VariantCountService.java b/src/main/java/org/cbioportal/service/VariantCountService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/VariantCountService.java rename to src/main/java/org/cbioportal/service/VariantCountService.java diff --git a/service/src/main/java/org/cbioportal/service/ViolinPlotService.java b/src/main/java/org/cbioportal/service/ViolinPlotService.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/ViolinPlotService.java rename to src/main/java/org/cbioportal/service/ViolinPlotService.java diff --git a/service/src/main/java/org/cbioportal/service/exception/CacheNotFoundException.java b/src/main/java/org/cbioportal/service/exception/CacheNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/CacheNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/CacheNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/CacheOperationException.java b/src/main/java/org/cbioportal/service/exception/CacheOperationException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/CacheOperationException.java rename to src/main/java/org/cbioportal/service/exception/CacheOperationException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/CancerTypeNotFoundException.java b/src/main/java/org/cbioportal/service/exception/CancerTypeNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/CancerTypeNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/CancerTypeNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/ClinicalAttributeNotFoundException.java b/src/main/java/org/cbioportal/service/exception/ClinicalAttributeNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/ClinicalAttributeNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/ClinicalAttributeNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/DataAccessTokenNoUserIdentityException.java b/src/main/java/org/cbioportal/service/exception/DataAccessTokenNoUserIdentityException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/DataAccessTokenNoUserIdentityException.java rename to src/main/java/org/cbioportal/service/exception/DataAccessTokenNoUserIdentityException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/DataAccessTokenProhibitedUserException.java b/src/main/java/org/cbioportal/service/exception/DataAccessTokenProhibitedUserException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/DataAccessTokenProhibitedUserException.java rename to src/main/java/org/cbioportal/service/exception/DataAccessTokenProhibitedUserException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/GeneNotFoundException.java b/src/main/java/org/cbioportal/service/exception/GeneNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/GeneNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/GeneNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/GenePanelNotFoundException.java b/src/main/java/org/cbioportal/service/exception/GenePanelNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/GenePanelNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/GenePanelNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/GeneWithMultipleEntrezIdsException.java b/src/main/java/org/cbioportal/service/exception/GeneWithMultipleEntrezIdsException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/GeneWithMultipleEntrezIdsException.java rename to src/main/java/org/cbioportal/service/exception/GeneWithMultipleEntrezIdsException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/GenericAssayNotFoundException.java b/src/main/java/org/cbioportal/service/exception/GenericAssayNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/GenericAssayNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/GenericAssayNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/GenesetNotFoundException.java b/src/main/java/org/cbioportal/service/exception/GenesetNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/GenesetNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/GenesetNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/InvalidDataAccessTokenException.java b/src/main/java/org/cbioportal/service/exception/InvalidDataAccessTokenException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/InvalidDataAccessTokenException.java rename to src/main/java/org/cbioportal/service/exception/InvalidDataAccessTokenException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/MolecularProfileNotFoundException.java b/src/main/java/org/cbioportal/service/exception/MolecularProfileNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/MolecularProfileNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/MolecularProfileNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/PatientNotFoundException.java b/src/main/java/org/cbioportal/service/exception/PatientNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/PatientNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/PatientNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/ResourceDefinitionNotFoundException.java b/src/main/java/org/cbioportal/service/exception/ResourceDefinitionNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/ResourceDefinitionNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/ResourceDefinitionNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/SampleListNotFoundException.java b/src/main/java/org/cbioportal/service/exception/SampleListNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/SampleListNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/SampleListNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/SampleNotFoundException.java b/src/main/java/org/cbioportal/service/exception/SampleNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/SampleNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/SampleNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/StudyNotFoundException.java b/src/main/java/org/cbioportal/service/exception/StudyNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/StudyNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/StudyNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/exception/TokenNotFoundException.java b/src/main/java/org/cbioportal/service/exception/TokenNotFoundException.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/exception/TokenNotFoundException.java rename to src/main/java/org/cbioportal/service/exception/TokenNotFoundException.java diff --git a/service/src/main/java/org/cbioportal/service/impl/AlterationCountServiceImpl.java b/src/main/java/org/cbioportal/service/impl/AlterationCountServiceImpl.java similarity index 98% rename from service/src/main/java/org/cbioportal/service/impl/AlterationCountServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/AlterationCountServiceImpl.java index 0e5484abf2d..4175ce3cf10 100644 --- a/service/src/main/java/org/cbioportal/service/impl/AlterationCountServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/AlterationCountServiceImpl.java @@ -264,10 +264,10 @@ private Pair, Long> getAlterationGeneCou alterationCountByGene.setNumberOfAlteredCases(alterationCountByGene.getNumberOfAlteredCases() + datum.getNumberOfAlteredCases()); alterationCountByGene.setNumberOfProfiledCases(alterationCountByGene.getNumberOfProfiledCases() + datum.getNumberOfProfiledCases()); Set matchingGenePanelIds = new HashSet<>(); - if (CollectionUtils.isNotEmpty(alterationCountByGene.getMatchingGenePanelIds())) { + if (!alterationCountByGene.getMatchingGenePanelIds().isEmpty()) { matchingGenePanelIds.addAll(alterationCountByGene.getMatchingGenePanelIds()); } - if (CollectionUtils.isNotEmpty(datum.getMatchingGenePanelIds())) { + if (!datum.getMatchingGenePanelIds().isEmpty()) { matchingGenePanelIds.addAll(datum.getMatchingGenePanelIds()); } alterationCountByGene.setMatchingGenePanelIds(matchingGenePanelIds); diff --git a/service/src/main/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImpl.java b/src/main/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImpl.java b/src/main/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/CacheServiceImpl.java b/src/main/java/org/cbioportal/service/impl/CacheServiceImpl.java similarity index 97% rename from service/src/main/java/org/cbioportal/service/impl/CacheServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/CacheServiceImpl.java index 17fd0bb56d4..6e0de479f55 100644 --- a/service/src/main/java/org/cbioportal/service/impl/CacheServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/CacheServiceImpl.java @@ -10,6 +10,7 @@ import org.cbioportal.service.CacheService; import org.cbioportal.service.exception.CacheOperationException; import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Qualifier; import org.springframework.cache.CacheManager; import org.springframework.stereotype.Component; @@ -24,6 +25,7 @@ public class CacheServiceImpl implements CacheService { @Autowired(required = false) private CacheManager cacheManager; + @Qualifier("staticRefCacheMapUtil") @Autowired private CacheMapUtil cacheMapUtil; diff --git a/service/src/main/java/org/cbioportal/service/impl/CacheStatisticsServiceImpl.java b/src/main/java/org/cbioportal/service/impl/CacheStatisticsServiceImpl.java similarity index 94% rename from service/src/main/java/org/cbioportal/service/impl/CacheStatisticsServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/CacheStatisticsServiceImpl.java index 8b8cf7254ca..f5f74f15e23 100644 --- a/service/src/main/java/org/cbioportal/service/impl/CacheStatisticsServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/CacheStatisticsServiceImpl.java @@ -1,15 +1,14 @@ package org.cbioportal.service.impl; +import jakarta.annotation.PostConstruct; import org.cbioportal.persistence.util.CustomEhcachingProvider; import org.cbioportal.service.CacheStatisticsService; import org.cbioportal.service.exception.CacheNotFoundException; import org.cbioportal.utils.config.annotation.ConditionalOnProperty; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; -import org.springframework.security.access.AccessDeniedException; import org.springframework.stereotype.Service; -import javax.annotation.PostConstruct; import javax.cache.Cache; import java.util.ArrayList; import java.util.HashMap; @@ -36,7 +35,8 @@ public void initializeStatisticsService () { protected void checkIfCacheStatisticsEndpointEnabled() { if (!cacheStatisticsEndpointEnabled) { - throw new AccessDeniedException("Cache statistics is not enabled for this instance of the portal."); + // TODO re-implement Service module level Exception? + throw new RuntimeException("Cache statistics is not enabled for this instance of the portal."); } } diff --git a/service/src/main/java/org/cbioportal/service/impl/CancerTypeServiceImpl.java b/src/main/java/org/cbioportal/service/impl/CancerTypeServiceImpl.java similarity index 97% rename from service/src/main/java/org/cbioportal/service/impl/CancerTypeServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/CancerTypeServiceImpl.java index f3c05f856d3..e039b58eaab 100644 --- a/service/src/main/java/org/cbioportal/service/impl/CancerTypeServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/CancerTypeServiceImpl.java @@ -1,5 +1,6 @@ package org.cbioportal.service.impl; +import jakarta.annotation.PostConstruct; import org.cbioportal.model.TypeOfCancer; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.persistence.CancerTypeRepository; @@ -12,7 +13,6 @@ import java.util.List; import java.util.Map; -import javax.annotation.PostConstruct; @Service public class CancerTypeServiceImpl implements CancerTypeService { @@ -71,8 +71,8 @@ private TypeOfCancer getParent(List allCancerTypes, TypeOfCancer t if (typeOfCancer.getParent().equals(TISSUE)) { return typeOfCancer; } - - return getParent(allCancerTypes, allCancerTypes.stream().filter(c -> + + return getParent(allCancerTypes, allCancerTypes.stream().filter(c -> c.getTypeOfCancerId().equals(typeOfCancer.getParent())).findFirst().get()); } } diff --git a/service/src/main/java/org/cbioportal/service/impl/ClinicalAttributeServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ClinicalAttributeServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ClinicalAttributeServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ClinicalAttributeServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ClinicalDataServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ClinicalDataServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ClinicalDataServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ClinicalDataServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ClinicalEventServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ClinicalEventServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ClinicalEventServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ClinicalEventServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/CoExpressionServiceImpl.java b/src/main/java/org/cbioportal/service/impl/CoExpressionServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/CoExpressionServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/CoExpressionServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImpl.java b/src/main/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/CosmicCountServiceImpl.java b/src/main/java/org/cbioportal/service/impl/CosmicCountServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/CosmicCountServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/CosmicCountServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/CustomDataServiceImpl.java b/src/main/java/org/cbioportal/service/impl/CustomDataServiceImpl.java similarity index 95% rename from service/src/main/java/org/cbioportal/service/impl/CustomDataServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/CustomDataServiceImpl.java index ef7c11c4889..3d339efb176 100644 --- a/service/src/main/java/org/cbioportal/service/impl/CustomDataServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/CustomDataServiceImpl.java @@ -4,7 +4,7 @@ import org.cbioportal.service.CustomDataService; import org.cbioportal.service.util.CustomDataSession; import org.cbioportal.service.util.SessionServiceRequestHandler; -import org.cbioportal.session_service.domain.SessionType; +import org.cbioportal.utils.removeme.Session; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Service; @@ -34,7 +34,7 @@ public Map getCustomDataSessions(List customA attributeId -> CompletableFuture.supplyAsync(() -> { try { String customDataSessionJson = sessionServiceRequestHandler.getSessionDataJson( - SessionType.custom_data, + Session.SessionType.custom_data, attributeId ); return sessionServiceObjectMapper.readValue(customDataSessionJson, CustomDataSession.class); diff --git a/service/src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java b/src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/EhcacheStatisticsServiceImpl.java b/src/main/java/org/cbioportal/service/impl/EhcacheStatisticsServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/EhcacheStatisticsServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/EhcacheStatisticsServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImpl.java similarity index 99% rename from service/src/main/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImpl.java index 45eb9ae478e..849983cbd3c 100644 --- a/service/src/main/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImpl.java @@ -101,7 +101,7 @@ public List getGenericAssayNumericalEnrichments(String m // Build sampleIdToPatientIdMap to quick find if a sample has shared patientId with other samples List sampleIds = molecularProfileCaseSets.values().stream().flatMap(Collection::stream).map(MolecularProfileCaseIdentifier::getCaseId).collect(Collectors.toList()); List studyIds = Collections.nCopies(sampleIds.size(), molecularProfile.getCancerStudyIdentifier()); - List samples = sampleService.fetchSamples(studyIds, sampleIds, "ID"); + List samples = sampleService.fetchSamples(studyIds, sampleIds, "SUMMARY"); Map sampleIdToPatientIdMap = samples.stream().collect(Collectors.toMap(Sample::getStableId, Sample::getPatientId)); // Build filteredMolecularProfileCaseSets filteredMolecularProfileCaseSets = new HashMap<>(); diff --git a/service/src/main/java/org/cbioportal/service/impl/GeneMemoizerServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GeneMemoizerServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/GeneMemoizerServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GeneMemoizerServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/GenePanelServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GenePanelServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/GenePanelServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GenePanelServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/GeneServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GeneServiceImpl.java similarity index 90% rename from service/src/main/java/org/cbioportal/service/impl/GeneServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GeneServiceImpl.java index 263e4a66238..a8ae132a090 100644 --- a/service/src/main/java/org/cbioportal/service/impl/GeneServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/GeneServiceImpl.java @@ -1,5 +1,6 @@ package org.cbioportal.service.impl; +import jakarta.annotation.PostConstruct; import org.cbioportal.model.Gene; import org.cbioportal.model.GeneAlias; import org.cbioportal.model.meta.BaseMeta; @@ -7,17 +8,14 @@ import org.cbioportal.service.GeneService; import org.cbioportal.service.exception.GeneNotFoundException; import org.cbioportal.service.exception.GeneWithMultipleEntrezIdsException; -import org.mybatis.spring.MyBatisSystemException; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Service; -import javax.annotation.PostConstruct; import java.util.ArrayList; import java.util.HashMap; import java.util.List; import java.util.Map; -import java.util.function.Function; import java.util.stream.Collectors; import static java.util.stream.Collectors.*; @@ -90,19 +88,16 @@ public Gene getGene(String geneId) throws GeneNotFoundException, GeneWithMultipl Gene gene; - try { - if (isInteger(geneId)) { - gene = geneRepository.getGeneByEntrezGeneId(Integer.valueOf(geneId)); - } else { - gene = geneRepository.getGeneByHugoGeneSymbol(geneId); - } - if (gene == null) { - throw new GeneNotFoundException(geneId); - } - return gene; - } catch (MyBatisSystemException e) { - throw new GeneWithMultipleEntrezIdsException(geneId); + if (isInteger(geneId)) { + gene = geneRepository.getGeneByEntrezGeneId(Integer.valueOf(geneId)); + } else { + gene = geneRepository.getGeneByHugoGeneSymbol(geneId); } + if (gene == null) { + throw new GeneNotFoundException(geneId); + } + return gene; + } @Override diff --git a/service/src/main/java/org/cbioportal/service/impl/GenericAssayServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GenericAssayServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/GenericAssayServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GenericAssayServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/GenesetCorrelationServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GenesetCorrelationServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/GenesetCorrelationServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GenesetCorrelationServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/GenesetDataServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GenesetDataServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/GenesetDataServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GenesetDataServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/GenesetHierarchyServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GenesetHierarchyServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/GenesetHierarchyServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GenesetHierarchyServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/GenesetServiceImpl.java b/src/main/java/org/cbioportal/service/impl/GenesetServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/GenesetServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/GenesetServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/JwtDataAccessTokenServiceImpl.java b/src/main/java/org/cbioportal/service/impl/JwtDataAccessTokenServiceImpl.java similarity index 96% rename from service/src/main/java/org/cbioportal/service/impl/JwtDataAccessTokenServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/JwtDataAccessTokenServiceImpl.java index e0e523bc5d7..f3fbbe3b21f 100644 --- a/service/src/main/java/org/cbioportal/service/impl/JwtDataAccessTokenServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/JwtDataAccessTokenServiceImpl.java @@ -38,6 +38,7 @@ import org.cbioportal.service.DataAccessTokenService; import org.cbioportal.service.exception.InvalidDataAccessTokenException; import org.cbioportal.service.util.JwtUtils; +import org.cbioportal.utils.config.annotation.ConditionalOnProperty; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.security.authentication.BadCredentialsException; import org.springframework.security.authentication.UsernamePasswordAuthenticationToken; @@ -45,7 +46,10 @@ import java.util.Date; import java.util.List; +import org.springframework.stereotype.Component; +@Component +@ConditionalOnProperty(name = "dat.method", havingValue = "jwt") public class JwtDataAccessTokenServiceImpl implements DataAccessTokenService { @Autowired diff --git a/service/src/main/java/org/cbioportal/service/impl/MolecularDataServiceImpl.java b/src/main/java/org/cbioportal/service/impl/MolecularDataServiceImpl.java similarity index 99% rename from service/src/main/java/org/cbioportal/service/impl/MolecularDataServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/MolecularDataServiceImpl.java index 786e19186b2..57be74b44d3 100644 --- a/service/src/main/java/org/cbioportal/service/impl/MolecularDataServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/MolecularDataServiceImpl.java @@ -126,7 +126,7 @@ public Iterable getMolecularAlterations(String molecula throws MolecularProfileNotFoundException { validateMolecularProfile(molecularProfileId); - if ((entrezGeneIds == null || entrezGeneIds.isEmpty()) && projection == "SUMMARY") { + if ((entrezGeneIds == null || entrezGeneIds.isEmpty()) && projection.equals("SUMMARY")) { return molecularDataRepository.getGeneMolecularAlterationsIterableFast(molecularProfileId); } return molecularDataRepository.getGeneMolecularAlterationsIterable(molecularProfileId, entrezGeneIds, projection); diff --git a/service/src/main/java/org/cbioportal/service/impl/MolecularProfileServiceImpl.java b/src/main/java/org/cbioportal/service/impl/MolecularProfileServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/MolecularProfileServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/MolecularProfileServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/MrnaPercentileServiceImpl.java b/src/main/java/org/cbioportal/service/impl/MrnaPercentileServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/MrnaPercentileServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/MrnaPercentileServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/MutationServiceImpl.java b/src/main/java/org/cbioportal/service/impl/MutationServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/MutationServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/MutationServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/MutationSpectrumServiceImpl.java b/src/main/java/org/cbioportal/service/impl/MutationSpectrumServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/MutationSpectrumServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/MutationSpectrumServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/PatientServiceImpl.java b/src/main/java/org/cbioportal/service/impl/PatientServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/PatientServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/PatientServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ReadPermissionServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ReadPermissionServiceImpl.java similarity index 99% rename from service/src/main/java/org/cbioportal/service/impl/ReadPermissionServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ReadPermissionServiceImpl.java index 17a54387c2a..0662008422b 100644 --- a/service/src/main/java/org/cbioportal/service/impl/ReadPermissionServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/ReadPermissionServiceImpl.java @@ -28,4 +28,4 @@ public void setReadPermission(Collection entities, Aut }); } -} +} \ No newline at end of file diff --git a/service/src/main/java/org/cbioportal/service/impl/RedisCacheStatisticsServiceImpl.java b/src/main/java/org/cbioportal/service/impl/RedisCacheStatisticsServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/RedisCacheStatisticsServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/RedisCacheStatisticsServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ResourceDataServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ResourceDataServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ResourceDataServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ResourceDataServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ResourceDefinitionServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ResourceDefinitionServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ResourceDefinitionServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ResourceDefinitionServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/SampleListServiceImpl.java b/src/main/java/org/cbioportal/service/impl/SampleListServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/SampleListServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/SampleListServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/SampleServiceImpl.java b/src/main/java/org/cbioportal/service/impl/SampleServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/SampleServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/SampleServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ServerStatusServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ServerStatusServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ServerStatusServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ServerStatusServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImpl.java b/src/main/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImpl.java b/src/main/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/StaticDataTimestampServiceImpl.java b/src/main/java/org/cbioportal/service/impl/StaticDataTimestampServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/StaticDataTimestampServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/StaticDataTimestampServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/StructuralVariantServiceImpl.java b/src/main/java/org/cbioportal/service/impl/StructuralVariantServiceImpl.java similarity index 92% rename from service/src/main/java/org/cbioportal/service/impl/StructuralVariantServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/StructuralVariantServiceImpl.java index bbb420b2b2d..07222ad3ee6 100644 --- a/service/src/main/java/org/cbioportal/service/impl/StructuralVariantServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/StructuralVariantServiceImpl.java @@ -32,6 +32,12 @@ import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Service; import java.util.List; +import java.util.*; +import java.util.stream.Collectors; +import java.util.stream.Stream; +import org.cbioportal.model.MolecularProfile; +import org.cbioportal.persistence.MolecularProfileRepository; +import org.springframework.util.CollectionUtils; @Service public class StructuralVariantServiceImpl implements StructuralVariantService { diff --git a/service/src/main/java/org/cbioportal/service/impl/StudyServiceImpl.java b/src/main/java/org/cbioportal/service/impl/StudyServiceImpl.java similarity index 99% rename from service/src/main/java/org/cbioportal/service/impl/StudyServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/StudyServiceImpl.java index 066067a2203..a2209fe38d9 100644 --- a/service/src/main/java/org/cbioportal/service/impl/StudyServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/StudyServiceImpl.java @@ -41,7 +41,6 @@ public List getAllStudies(String keyword, String projection, Intege List allStudies = studyRepository.getAllStudies(keyword, projection, pageSize, pageNumber, sortBy, direction); Map sortedAllStudiesByCancerStudyIdentifier = allStudies.stream().collect(Collectors.toMap(c -> c.getCancerStudyIdentifier(), c -> c, (e1, e2) -> e2, LinkedHashMap::new)); - if (keyword != null && (pageSize == null || allStudies.size() < pageSize)) { List primarySiteMatchingStudies = findPrimarySiteMatchingStudies(keyword); for (CancerStudy cancerStudy : primarySiteMatchingStudies) { diff --git a/service/src/main/java/org/cbioportal/service/impl/StudyViewServiceImpl.java b/src/main/java/org/cbioportal/service/impl/StudyViewServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/StudyViewServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/StudyViewServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/TreatmentServiceImpl.java b/src/main/java/org/cbioportal/service/impl/TreatmentServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/TreatmentServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/TreatmentServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/UnauthDataAccessTokenServiceImpl.java b/src/main/java/org/cbioportal/service/impl/UnauthDataAccessTokenServiceImpl.java similarity index 94% rename from service/src/main/java/org/cbioportal/service/impl/UnauthDataAccessTokenServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/UnauthDataAccessTokenServiceImpl.java index c445bf5b39b..527f7ef74b6 100644 --- a/service/src/main/java/org/cbioportal/service/impl/UnauthDataAccessTokenServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/UnauthDataAccessTokenServiceImpl.java @@ -34,17 +34,21 @@ import org.cbioportal.model.DataAccessToken; import org.cbioportal.service.DataAccessTokenService; +import org.cbioportal.utils.config.annotation.ConditionalOnProperty; import org.springframework.security.access.AccessDeniedException; import org.springframework.security.core.Authentication; import java.util.Date; import java.util.List; +import org.springframework.stereotype.Component; /** * * @author ochoaa */ +@Component +@ConditionalOnProperty(name = "authenticate", havingValue = "none", matchIfMissing = true) public class UnauthDataAccessTokenServiceImpl implements DataAccessTokenService { @Override diff --git a/service/src/main/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImpl.java b/src/main/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImpl.java similarity index 97% rename from service/src/main/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImpl.java index 01027a9bf81..b1c977edb75 100644 --- a/service/src/main/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImpl.java +++ b/src/main/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImpl.java @@ -38,6 +38,7 @@ import org.cbioportal.persistence.DataAccessTokenRepository; import org.cbioportal.service.DataAccessTokenService; import org.cbioportal.service.exception.TokenNotFoundException; +import org.cbioportal.utils.config.annotation.ConditionalOnProperty; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; import org.springframework.security.authentication.BadCredentialsException; @@ -48,7 +49,10 @@ import java.util.Date; import java.util.List; import java.util.UUID; +import org.springframework.stereotype.Component; +@Component +@ConditionalOnProperty(name = "dat.method", havingValue = "uuid") public class UuidDataAccessTokenServiceImpl implements DataAccessTokenService { @Autowired diff --git a/service/src/main/java/org/cbioportal/service/impl/VariantCountServiceImpl.java b/src/main/java/org/cbioportal/service/impl/VariantCountServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/VariantCountServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/VariantCountServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/impl/ViolinPlotServiceImpl.java b/src/main/java/org/cbioportal/service/impl/ViolinPlotServiceImpl.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/impl/ViolinPlotServiceImpl.java rename to src/main/java/org/cbioportal/service/impl/ViolinPlotServiceImpl.java diff --git a/service/src/main/java/org/cbioportal/service/util/AlterationEnrichmentUtil.java b/src/main/java/org/cbioportal/service/util/AlterationEnrichmentUtil.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/AlterationEnrichmentUtil.java rename to src/main/java/org/cbioportal/service/util/AlterationEnrichmentUtil.java diff --git a/service/src/main/java/org/cbioportal/service/util/BinnableCustomDataValue.java b/src/main/java/org/cbioportal/service/util/BinnableCustomDataValue.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/BinnableCustomDataValue.java rename to src/main/java/org/cbioportal/service/util/BinnableCustomDataValue.java diff --git a/service/src/main/java/org/cbioportal/service/util/ChromosomeCalculator.java b/src/main/java/org/cbioportal/service/util/ChromosomeCalculator.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/ChromosomeCalculator.java rename to src/main/java/org/cbioportal/service/util/ChromosomeCalculator.java diff --git a/service/src/main/java/org/cbioportal/service/util/ClinicalAttributeUtil.java b/src/main/java/org/cbioportal/service/util/ClinicalAttributeUtil.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/ClinicalAttributeUtil.java rename to src/main/java/org/cbioportal/service/util/ClinicalAttributeUtil.java diff --git a/service/src/main/java/org/cbioportal/service/util/CoExpressionAsyncMethods.java b/src/main/java/org/cbioportal/service/util/CoExpressionAsyncMethods.java similarity index 95% rename from service/src/main/java/org/cbioportal/service/util/CoExpressionAsyncMethods.java rename to src/main/java/org/cbioportal/service/util/CoExpressionAsyncMethods.java index 5f8bac02849..6e07ab2c1a9 100644 --- a/service/src/main/java/org/cbioportal/service/util/CoExpressionAsyncMethods.java +++ b/src/main/java/org/cbioportal/service/util/CoExpressionAsyncMethods.java @@ -3,8 +3,6 @@ import org.springframework.stereotype.Component; import org.springframework.scheduling.annotation.Async; import org.cbioportal.model.CoExpression; -import org.cbioportal.service.exception.GeneNotFoundException; -import org.cbioportal.service.exception.GenesetNotFoundException; import org.apache.commons.lang3.math.NumberUtils; import org.apache.commons.math3.linear.Array2DRowRealMatrix; import org.apache.commons.math3.linear.RealMatrix; diff --git a/service/src/main/java/org/cbioportal/service/util/CustomAttributeWithData.java b/src/main/java/org/cbioportal/service/util/CustomAttributeWithData.java similarity index 98% rename from service/src/main/java/org/cbioportal/service/util/CustomAttributeWithData.java rename to src/main/java/org/cbioportal/service/util/CustomAttributeWithData.java index 65b7758d573..ce7e5bcd159 100644 --- a/service/src/main/java/org/cbioportal/service/util/CustomAttributeWithData.java +++ b/src/main/java/org/cbioportal/service/util/CustomAttributeWithData.java @@ -7,9 +7,9 @@ import java.util.Set; import java.util.stream.Collectors; -import javax.validation.constraints.NotNull; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; +import jakarta.validation.constraints.NotNull; @JsonIgnoreProperties(ignoreUnknown = true) public class CustomAttributeWithData implements Serializable { diff --git a/service/src/main/java/org/cbioportal/service/util/CustomDataSession.java b/src/main/java/org/cbioportal/service/util/CustomDataSession.java similarity index 90% rename from service/src/main/java/org/cbioportal/service/util/CustomDataSession.java rename to src/main/java/org/cbioportal/service/util/CustomDataSession.java index cd25a4ea471..151af9b4227 100644 --- a/service/src/main/java/org/cbioportal/service/util/CustomDataSession.java +++ b/src/main/java/org/cbioportal/service/util/CustomDataSession.java @@ -4,9 +4,7 @@ import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import org.cbioportal.session_service.domain.Session; -import org.cbioportal.session_service.domain.SessionType; - +import org.cbioportal.utils.removeme.Session; import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.databind.ObjectMapper; diff --git a/service/src/main/java/org/cbioportal/service/util/CustomDataValue.java b/src/main/java/org/cbioportal/service/util/CustomDataValue.java similarity index 95% rename from service/src/main/java/org/cbioportal/service/util/CustomDataValue.java rename to src/main/java/org/cbioportal/service/util/CustomDataValue.java index a0cb95c42a6..9e9343a7e2a 100644 --- a/service/src/main/java/org/cbioportal/service/util/CustomDataValue.java +++ b/src/main/java/org/cbioportal/service/util/CustomDataValue.java @@ -2,9 +2,9 @@ import java.io.Serializable; -import javax.validation.constraints.NotNull; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; +import jakarta.validation.constraints.NotNull; @JsonIgnoreProperties(ignoreUnknown = true) public class CustomDataValue implements Serializable { diff --git a/service/src/main/java/org/cbioportal/service/util/ExpressionEnrichmentUtil.java b/src/main/java/org/cbioportal/service/util/ExpressionEnrichmentUtil.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/ExpressionEnrichmentUtil.java rename to src/main/java/org/cbioportal/service/util/ExpressionEnrichmentUtil.java diff --git a/service/src/main/java/org/cbioportal/service/util/FisherExactTestCalculator.java b/src/main/java/org/cbioportal/service/util/FisherExactTestCalculator.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/FisherExactTestCalculator.java rename to src/main/java/org/cbioportal/service/util/FisherExactTestCalculator.java diff --git a/service/src/main/java/org/cbioportal/service/util/JwtUtils.java b/src/main/java/org/cbioportal/service/util/JwtUtils.java similarity index 94% rename from service/src/main/java/org/cbioportal/service/util/JwtUtils.java rename to src/main/java/org/cbioportal/service/util/JwtUtils.java index feebce52286..e7022de31a7 100644 --- a/service/src/main/java/org/cbioportal/service/util/JwtUtils.java +++ b/src/main/java/org/cbioportal/service/util/JwtUtils.java @@ -48,7 +48,6 @@ package org.cbioportal.service.util; -import com.mysql.jdbc.StringUtils; import org.cbioportal.model.DataAccessToken; import org.cbioportal.service.exception.InvalidDataAccessTokenException; @@ -73,7 +72,7 @@ public class JwtUtils { private byte[] decodedSecretKey; @Value("${dat.jwt.secret_key:none}") // default value is none private void setDecodedSecretKey(String secretKey) { - if (!StringUtils.isNullOrEmpty(secretKey) && !secretKey.equalsIgnoreCase("none")) { + if (!secretKey.isEmpty() && !secretKey.equalsIgnoreCase("none")) { this.decodedSecretKey = Decoders.BASE64.decode(secretKey); } } @@ -145,17 +144,11 @@ public static String createNewSecretKey() { } public static void main(String[] args) { - if (args.length < 1 || args.length > 1) { - usage(); - } - if (args[0].equals("--make-key")) { + if (args.length == 1 && args[0].equals("--make-key")) { System.out.println("Creating new secret key for JWTS token signing:"); System.out.println(createNewSecretKey()); + } else { + System.out.println("usage: JwtUtils --make-key"); } } - - public static void usage() { - System.out.println("usage: JwtUtils --make-key"); - } - } diff --git a/service/src/main/java/org/cbioportal/service/util/MolecularProfileUtil.java b/src/main/java/org/cbioportal/service/util/MolecularProfileUtil.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/MolecularProfileUtil.java rename to src/main/java/org/cbioportal/service/util/MolecularProfileUtil.java diff --git a/src/main/java/org/cbioportal/service/util/MskWholeSlideViewerTokenGenerator.java b/src/main/java/org/cbioportal/service/util/MskWholeSlideViewerTokenGenerator.java new file mode 100644 index 00000000000..22ac7e776ae --- /dev/null +++ b/src/main/java/org/cbioportal/service/util/MskWholeSlideViewerTokenGenerator.java @@ -0,0 +1,37 @@ + +package org.cbioportal.service.util; + +import java.util.Base64; +import javax.crypto.Mac; +import javax.crypto.spec.SecretKeySpec; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +public class MskWholeSlideViewerTokenGenerator { + // ~ Static fields + // ======================================================================================================== + + private final static Logger logger = LoggerFactory.getLogger(MskWholeSlideViewerTokenGenerator.class); + private static final String PORTAL_NAME = "cbioportal"; + + // ~ Methods + // ======================================================================================================== + + public static String generateTokenByHmacSHA256(String username, String secretKey, String timeStamp) { + try { + String message = PORTAL_NAME + "?" + "user=" + username + "&t=" + timeStamp; + + Mac sha256_HMAC = Mac.getInstance("HmacSHA256"); + SecretKeySpec secret_key = new SecretKeySpec(secretKey.getBytes(), "HmacSHA256"); + sha256_HMAC.init(secret_key); + String hash = Base64.getEncoder().encodeToString(sha256_HMAC.doFinal(message.getBytes())); + return hash; + } + catch (Exception e) { + if (logger.isErrorEnabled()) { + logger.error("Error generate msk Whole slide viewer token: " + e.getMessage()); + } + return null; + } + } +} diff --git a/service/src/main/java/org/cbioportal/service/util/ProfiledCasesCounter.java b/src/main/java/org/cbioportal/service/util/ProfiledCasesCounter.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/ProfiledCasesCounter.java rename to src/main/java/org/cbioportal/service/util/ProfiledCasesCounter.java diff --git a/service/src/main/java/org/cbioportal/service/util/SessionServiceConfig.java b/src/main/java/org/cbioportal/service/util/SessionServiceConfig.java similarity index 100% rename from service/src/main/java/org/cbioportal/service/util/SessionServiceConfig.java rename to src/main/java/org/cbioportal/service/util/SessionServiceConfig.java diff --git a/service/src/main/java/org/cbioportal/service/util/SessionServiceRequestHandler.java b/src/main/java/org/cbioportal/service/util/SessionServiceRequestHandler.java similarity index 97% rename from service/src/main/java/org/cbioportal/service/util/SessionServiceRequestHandler.java rename to src/main/java/org/cbioportal/service/util/SessionServiceRequestHandler.java index cabe6cfa934..c408f2f2139 100644 --- a/service/src/main/java/org/cbioportal/service/util/SessionServiceRequestHandler.java +++ b/src/main/java/org/cbioportal/service/util/SessionServiceRequestHandler.java @@ -1,10 +1,12 @@ package org.cbioportal.service.util; +import static org.cbioportal.utils.removeme.Session.*; + + import java.nio.charset.Charset; import org.apache.commons.codec.binary.Base64; import org.apache.commons.lang3.StringUtils; -import org.cbioportal.session_service.domain.SessionType; import org.springframework.beans.factory.annotation.Value; import org.springframework.http.HttpEntity; import org.springframework.http.HttpHeaders; diff --git a/web/src/main/java/org/cbioportal/url_shortener/URLShortenerController.java b/src/main/java/org/cbioportal/url_shortener/URLShortenerController.java similarity index 83% rename from web/src/main/java/org/cbioportal/url_shortener/URLShortenerController.java rename to src/main/java/org/cbioportal/url_shortener/URLShortenerController.java index d266cedd7ce..00804ca9769 100644 --- a/web/src/main/java/org/cbioportal/url_shortener/URLShortenerController.java +++ b/src/main/java/org/cbioportal/url_shortener/URLShortenerController.java @@ -12,6 +12,8 @@ import org.springframework.web.bind.annotation.RequestParam; import org.springframework.web.bind.annotation.RestController; +// TODO Consider creating separate DispatcherServlets as in the original web.xml +// See: https://stackoverflow.com/a/30686733/11651683 @RestController public class URLShortenerController { @@ -21,7 +23,7 @@ public class URLShortenerController { private Bitly bitly ; private UrlValidator urlValidator = new UrlValidator(); - @RequestMapping(method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @RequestMapping(path = "/api/url-shortener", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) public ResponseEntity urlShortener(@RequestParam String url) { if (urlValidator.isValid(url)) { diff --git a/web/src/main/java/org/cbioportal/url_shortener/URLShortenerResponse.java b/src/main/java/org/cbioportal/url_shortener/URLShortenerResponse.java similarity index 100% rename from web/src/main/java/org/cbioportal/url_shortener/URLShortenerResponse.java rename to src/main/java/org/cbioportal/url_shortener/URLShortenerResponse.java diff --git a/utils/src/main/java/org/cbioportal/utils/config/PropertyCondition.java b/src/main/java/org/cbioportal/utils/config/PropertyCondition.java similarity index 97% rename from utils/src/main/java/org/cbioportal/utils/config/PropertyCondition.java rename to src/main/java/org/cbioportal/utils/config/PropertyCondition.java index f19da2e365d..679343e0801 100644 --- a/utils/src/main/java/org/cbioportal/utils/config/PropertyCondition.java +++ b/src/main/java/org/cbioportal/utils/config/PropertyCondition.java @@ -42,7 +42,7 @@ import java.util.stream.Stream; @PropertySources({ - @PropertySource(value="classpath:portal.properties", ignoreResourceNotFound=true), + @PropertySource(value="classpath:application.properties", ignoreResourceNotFound=true), @PropertySource(value="file:///${PORTAL_HOME}/portal.properties", ignoreResourceNotFound=true) }) // Adapted from Spring Boot diff --git a/utils/src/main/java/org/cbioportal/utils/config/annotation/ConditionalOnProperty.java b/src/main/java/org/cbioportal/utils/config/annotation/ConditionalOnProperty.java similarity index 100% rename from utils/src/main/java/org/cbioportal/utils/config/annotation/ConditionalOnProperty.java rename to src/main/java/org/cbioportal/utils/config/annotation/ConditionalOnProperty.java diff --git a/src/main/java/org/cbioportal/utils/removeme/Session.java b/src/main/java/org/cbioportal/utils/removeme/Session.java new file mode 100644 index 00000000000..6d12df58d79 --- /dev/null +++ b/src/main/java/org/cbioportal/utils/removeme/Session.java @@ -0,0 +1,90 @@ +package org.cbioportal.utils.removeme; + +import com.fasterxml.jackson.annotation.JsonInclude; +import com.fasterxml.jackson.annotation.JsonView; +import jakarta.validation.constraints.NotNull; +import jakarta.validation.constraints.Size; +import org.bson.Document; +import org.springframework.data.annotation.Id; +import org.springframework.util.DigestUtils; + +// TODO this class was taken from session service. The session service dependency had to be dropped +// since it forced cbioportal into autoconfiguration of mongoDB connections. +// When session service is updated reinstate the correct session service dependency. + +@JsonInclude(JsonInclude.Include.NON_NULL) +public class Session { + + public enum SessionType { + main_session, + virtual_study, + group, + comparison_session, + settings, + custom_data, + genomic_chart, + custom_gene_list + } + + @Id + private String id; + @NotNull + private String checksum; + @NotNull + private Object data; + @NotNull + @Size(min=3, message="source has a minimum length of 3") + private String source; + @NotNull + private SessionType type; + + + @JsonView(Session.Views.IdOnly.class) + public String getId() { + return id; + } + + public String getChecksum() { + return checksum; + } + + public void setData(Object data) { + if(data instanceof String) { + this.data = Document.parse((String)data); + } else { + this.data = data; + } + this.checksum = DigestUtils.md5DigestAsHex(this.data.toString().getBytes()); + } + + @JsonView(Session.Views.Full.class) + public Object getData() { + return data; + } + + public void setType(SessionType type) { + this.type = type; + } + + @JsonView(org.cbioportal.utils.removeme.Session.Views.Full.class) + public SessionType getType() { + return type; + } + + public void setSource(String source) { + this.source = source; + } + + @JsonView(Session.Views.Full.class) + public String getSource() { + return source; + } + + public static final class Views { + // show only id + public interface IdOnly {} + + // show all data + public interface Full extends Session.Views.IdOnly {} + } +} diff --git a/utils/src/main/java/org/cbioportal/utils/security/AccessLevel.java b/src/main/java/org/cbioportal/utils/security/AccessLevel.java similarity index 100% rename from utils/src/main/java/org/cbioportal/utils/security/AccessLevel.java rename to src/main/java/org/cbioportal/utils/security/AccessLevel.java diff --git a/src/main/java/org/cbioportal/utils/security/PortalSecurityConfig.java b/src/main/java/org/cbioportal/utils/security/PortalSecurityConfig.java new file mode 100644 index 00000000000..068a1641d68 --- /dev/null +++ b/src/main/java/org/cbioportal/utils/security/PortalSecurityConfig.java @@ -0,0 +1,12 @@ +package org.cbioportal.utils.security; + +public class PortalSecurityConfig { + + // This method is the equivalent of GlobalProperties.usersMustAuthenticate() + // method in the org.mskcc.cbio.portal.util package. Update both when changes are needed. + public static boolean userAuthorizationEnabled(String authenticate) { + return authenticate != null + && !authenticate.equals("false"); + } + +} diff --git a/src/main/java/org/cbioportal/utils/validation/AllowedValues.java b/src/main/java/org/cbioportal/utils/validation/AllowedValues.java new file mode 100644 index 00000000000..b42d3b0679b --- /dev/null +++ b/src/main/java/org/cbioportal/utils/validation/AllowedValues.java @@ -0,0 +1,27 @@ +package org.cbioportal.utils.validation; + +import jakarta.validation.Constraint; +import jakarta.validation.Payload; +import jakarta.validation.ReportAsSingleViolation; +import jakarta.validation.constraints.NotNull; + +import java.lang.annotation.Documented; +import java.lang.annotation.ElementType; +import java.lang.annotation.Retention; +import java.lang.annotation.RetentionPolicy; +import java.lang.annotation.Target; + +@Documented +@Constraint(validatedBy = AllowedValuesValidatorImpl.class) +@Retention(RetentionPolicy.RUNTIME) +@Target(ElementType.FIELD) +@NotNull(message = "Value cannot be null") +@ReportAsSingleViolation +public @interface AllowedValues { + + String[] values() default {}; + String message() default "Value is not valid"; + Class[] groups() default {}; + Class[] payload() default {}; + +} \ No newline at end of file diff --git a/src/main/java/org/cbioportal/utils/validation/AllowedValuesValidatorImpl.java b/src/main/java/org/cbioportal/utils/validation/AllowedValuesValidatorImpl.java new file mode 100644 index 00000000000..08eb9800b5c --- /dev/null +++ b/src/main/java/org/cbioportal/utils/validation/AllowedValuesValidatorImpl.java @@ -0,0 +1,31 @@ +package org.cbioportal.utils.validation; + +import jakarta.validation.ConstraintValidator; +import jakarta.validation.ConstraintValidatorContext; + +import java.util.Arrays; +import java.util.stream.Collectors; + +public class AllowedValuesValidatorImpl implements ConstraintValidator { + + String[] valueList; + + @Override + public boolean isValid(String value, ConstraintValidatorContext context) { + boolean isValid = Arrays.stream(valueList) + .anyMatch(allowedValue -> allowedValue.equals(value)); + if (!isValid) { + context.disableDefaultConstraintViolation(); + context.buildConstraintViolationWithTemplate("Allowed values are: " + + Arrays.stream(valueList).collect(Collectors.joining(", "))) + .addConstraintViolation(); + } + return isValid; + } + + @Override + public void initialize(AllowedValues constraintAnnotation) { + valueList = constraintAnnotation.values(); + } + +} \ No newline at end of file diff --git a/src/main/java/org/cbioportal/web/AlterationDriverAnnotationController.java b/src/main/java/org/cbioportal/web/AlterationDriverAnnotationController.java new file mode 100644 index 00000000000..35880303b77 --- /dev/null +++ b/src/main/java/org/cbioportal/web/AlterationDriverAnnotationController.java @@ -0,0 +1,51 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import org.cbioportal.model.CustomDriverAnnotationReport; +import org.cbioportal.service.AlterationDriverAnnotationService; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PostMapping; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Custom driver annotations", description = " ") +public class AlterationDriverAnnotationController { + + @Autowired + private AlterationDriverAnnotationService alterationDriverAnnotationService; + + @PreAuthorize("hasPermission(#molecularProfileIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/custom-driver-annotation-report/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(summary = "Return availability of custom driver annotations for molecular profiles") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = CustomDriverAnnotationReport.class))) + public ResponseEntity fetchAlterationDriverAnnotationReport( + @Parameter(required = true, description = "List of Molecular Profile Ids") + @RequestBody List molecularProfileIds) { + + CustomDriverAnnotationReport customDriverAnnotationReport = alterationDriverAnnotationService.getCustomDriverAnnotationProps(molecularProfileIds); + + return new ResponseEntity<>(customDriverAnnotationReport, HttpStatus.OK); + } +} + diff --git a/src/main/java/org/cbioportal/web/AlterationEnrichmentController.java b/src/main/java/org/cbioportal/web/AlterationEnrichmentController.java new file mode 100644 index 00000000000..2d635e1e3e9 --- /dev/null +++ b/src/main/java/org/cbioportal/web/AlterationEnrichmentController.java @@ -0,0 +1,80 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.cbioportal.model.AlterationEnrichment; +import org.cbioportal.model.AlterationFilter; +import org.cbioportal.model.EnrichmentType; +import org.cbioportal.model.MolecularProfileCaseIdentifier; +import org.cbioportal.service.AlterationEnrichmentService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.MolecularProfileCasesGroupAndAlterationTypeFilter; +import org.cbioportal.web.parameter.MolecularProfileCasesGroupFilter; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PostMapping; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.Collection; +import java.util.List; +import java.util.Map; +import java.util.stream.Collectors; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Alteration Enrichments", description = " ") +public class AlterationEnrichmentController { + + @Autowired + private AlterationEnrichmentService alterationEnrichmentService; + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/alteration-enrichments/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(summary ="Fetch alteration enrichments in molecular profiles") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = AlterationEnrichment.class)))) + public ResponseEntity> fetchAlterationEnrichments( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) + // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters, + @Parameter(hidden = true) + @Valid @RequestAttribute(required = false, value = "alterationEventTypes") AlterationFilter alterationEventTypes, + @Parameter(description = "Type of the enrichment e.g. SAMPLE or PATIENT") + @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, + @Parameter(required = true, description = "List of groups containing sample identifiers and list of Alteration Types") + @Valid @RequestBody(required = false) MolecularProfileCasesGroupAndAlterationTypeFilter groupsAndAlterationTypes) throws MolecularProfileNotFoundException { + + Map> groupCaseIdentifierSet = interceptedMolecularProfileCasesGroupFilters.stream() + .collect(Collectors.toMap(MolecularProfileCasesGroupFilter::getName, + MolecularProfileCasesGroupFilter::getMolecularProfileCaseIdentifiers)); + + List alterationEnrichments = alterationEnrichmentService.getAlterationEnrichments( + groupCaseIdentifierSet, + enrichmentType, + alterationEventTypes); + + return new ResponseEntity<>(alterationEnrichments, HttpStatus.OK); + } +} + diff --git a/src/main/java/org/cbioportal/web/CacheController.java b/src/main/java/org/cbioportal/web/CacheController.java new file mode 100644 index 00000000000..b739ef2b575 --- /dev/null +++ b/src/main/java/org/cbioportal/web/CacheController.java @@ -0,0 +1,82 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import org.cbioportal.service.CacheService; +import org.cbioportal.service.exception.CacheOperationException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestHeader; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + + +@RestController +@Validated +@InternalApi +@Tag(name = "Cache") +public class CacheController { + + @Autowired + private CacheService cacheService; + + @Value("${cache.endpoint.api-key:not set}") + private String requiredApiKey; + + @Value("${cache.endpoint.enabled:false}") + private boolean cacheEndpointEnabled; + + @RequestMapping(value = "/api/cache", method = RequestMethod.DELETE, produces = MediaType.TEXT_PLAIN_VALUE) + @Operation(summary ="Clear and reinitialize caches") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity clearAllCaches( + @Parameter(description = "Secret API key passed in HTTP header. The key is configured in portal.properties of the portal instance.") + @RequestHeader(value = "X-API-KEY") String providedApiKey, + @Parameter(description = "Clear Spring-managed caches") + @RequestParam(defaultValue = "true", required = false) final boolean springManagedCache) + throws CacheOperationException { + if (!cacheEndpointEnabled) { + return new ResponseEntity<>("Cache endpoint is disabled for this instance.", HttpStatus.NOT_FOUND); + } + if ("not set".equals(requiredApiKey) || ! requiredApiKey.equals(providedApiKey)) { + return new ResponseEntity<>("", HttpStatus.UNAUTHORIZED); + } + cacheService.clearCaches(springManagedCache); + return new ResponseEntity<>("Flushed all caches!!!", HttpStatus.OK); + } + + @RequestMapping(value = "/cache/{studyId}", method = RequestMethod.DELETE, produces = MediaType.TEXT_PLAIN_VALUE) + @Operation(summary ="Clear and reinitialize caches after import/removal/update of a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity clearCachesForStudy( + @Parameter(description = "Secret API key passed in HTTP header. The key is configured in portal.properties of the portal instance.") + @RequestHeader(value = "X-API-KEY") String providedApiKey, + @PathVariable String studyId, + @Parameter(description = "Clear Spring-managed caches") + @RequestParam(defaultValue = "true", required = false) final boolean springManagedCache) + throws CacheOperationException { + if (!cacheEndpointEnabled) { + return new ResponseEntity<>("Cache endpoint is disabled for this instance.", HttpStatus.NOT_FOUND); + } + if ("not set".equals(requiredApiKey) || ! requiredApiKey.equals(providedApiKey)) { + return new ResponseEntity<>("", HttpStatus.UNAUTHORIZED); + } + + cacheService.clearCachesForStudy(studyId, springManagedCache); + return new ResponseEntity<>("Flushed "+ studyId +" caches!!!", HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/CacheStatsController.java b/src/main/java/org/cbioportal/web/CacheStatsController.java new file mode 100644 index 00000000000..abcdff97a9d --- /dev/null +++ b/src/main/java/org/cbioportal/web/CacheStatsController.java @@ -0,0 +1,65 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Hidden; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import org.cbioportal.service.CacheStatisticsService; +import org.cbioportal.service.exception.CacheNotFoundException; +import org.cbioportal.utils.config.annotation.ConditionalOnProperty; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@RestController +@Validated +@Tag(name = "CacheStats", description = " ") +@Hidden +@ConditionalOnProperty(name = "persistence.cache_type", havingValue = {"ehcache-heap", "ehcache-disk", "ehcache-hybrid", "redis"}) +public class CacheStatsController { + + @Autowired + public CacheStatisticsService cacheStatisticsService; + + @RequestMapping(value = "/api/{cache}/keysInCache", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get list of keys in cache") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = String.class)))) + public ResponseEntity> getKeysInCache( + @Parameter(required = true, description = "Cache name") + @PathVariable String cache) throws CacheNotFoundException { + List strings = cacheStatisticsService.getKeysInCache(cache); + return new ResponseEntity<>(strings, HttpStatus.OK); + } + + @RequestMapping(value = "/api/{cache}/keyCountsPerClass", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get counts of keys per repository class") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = String.class)))) + public ResponseEntity> getKeyCountsPerClass( + @Parameter(required = true, description = "Cache name") + @PathVariable String cache) throws CacheNotFoundException { + List strings = cacheStatisticsService.getKeyCountsPerClass(cache); + return new ResponseEntity<>(strings, HttpStatus.OK); + } + + @RequestMapping(value = "/api/cacheStatistics", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get general cache statistics") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity getCacheStatistics() throws CacheNotFoundException { + return new ResponseEntity<>(cacheStatisticsService.getCacheStatistics(), HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/CancerTypeController.java b/src/main/java/org/cbioportal/web/CancerTypeController.java new file mode 100644 index 00000000000..3ea034f775a --- /dev/null +++ b/src/main/java/org/cbioportal/web/CancerTypeController.java @@ -0,0 +1,86 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.TypeOfCancer; +import org.cbioportal.service.CancerTypeService; +import org.cbioportal.service.exception.CancerTypeNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.CancerTypeSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@PublicApi +@RestController +@Validated +@Tag(name = PublicApiTags.CANCER_TYPES, description = " ") +public class CancerTypeController { + + @Autowired + private CancerTypeService cancerTypeService; + + @RequestMapping(value = "/api/cancer-types", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all cancer types") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = TypeOfCancer.class)))) + public ResponseEntity> getAllCancerTypes( + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") final Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) final Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) final Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) final CancerTypeSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") final Direction direction) { + + if (projection == Projection.META) { + final HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, cancerTypeService.getMetaCancerTypes().getTotalCount() + .toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + cancerTypeService.getAllCancerTypes(projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @RequestMapping(value = "/api/cancer-types/{cancerTypeId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get a cancer type") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity getCancerType( + @Parameter(required = true, description = "Cancer Type ID e.g. acc") + @PathVariable final String cancerTypeId) throws CancerTypeNotFoundException { + return new ResponseEntity<>(cancerTypeService.getCancerType(cancerTypeId), HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/ClinicalAttributeController.java b/src/main/java/org/cbioportal/web/ClinicalAttributeController.java new file mode 100644 index 00000000000..730b8925810 --- /dev/null +++ b/src/main/java/org/cbioportal/web/ClinicalAttributeController.java @@ -0,0 +1,159 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.ClinicalAttribute; +import org.cbioportal.service.ClinicalAttributeService; +import org.cbioportal.service.exception.ClinicalAttributeNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.ClinicalAttributeSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.CLINICAL_ATTRIBUTES, description = " ") +public class ClinicalAttributeController { + + @Autowired + private ClinicalAttributeService clinicalAttributeService; + + @RequestMapping(value = "/clinical-attributes", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all clinical attributes") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalAttribute.class)))) + public ResponseEntity> getAllClinicalAttributes( + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ClinicalAttributeSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalAttributeService.getMetaClinicalAttributes() + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalAttributeService.getAllClinicalAttributes(projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/clinical-attributes", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all clinical attributes in the specified study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalAttribute.class)))) + public ResponseEntity> getAllClinicalAttributesInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ClinicalAttributeSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalAttributeService + .getMetaClinicalAttributesInStudy(studyId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalAttributeService.getAllClinicalAttributesInStudy(studyId, projection.name(), pageSize, + pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), + HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/clinical-attributes/{clinicalAttributeId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get specified clinical attribute") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = ClinicalAttribute.class))) + public ResponseEntity getClinicalAttributeInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description= "Clinical Attribute ID e.g. CANCER_TYPE") + @PathVariable String clinicalAttributeId) + throws ClinicalAttributeNotFoundException, StudyNotFoundException { + + return new ResponseEntity<>(clinicalAttributeService.getClinicalAttribute(studyId, clinicalAttributeId), + HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-attributes/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch clinical attributes") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalAttribute.class)))) + public ResponseEntity> fetchClinicalAttributes( + @Parameter(required = true, description = "List of Study IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody List studyIds, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalAttributeService.fetchMetaClinicalAttributes( + studyIds).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>(clinicalAttributeService.fetchClinicalAttributes(studyIds, projection.name()), + HttpStatus.OK); + } + } + +} diff --git a/src/main/java/org/cbioportal/web/ClinicalAttributeCountController.java b/src/main/java/org/cbioportal/web/ClinicalAttributeCountController.java new file mode 100644 index 00000000000..7bf96005675 --- /dev/null +++ b/src/main/java/org/cbioportal/web/ClinicalAttributeCountController.java @@ -0,0 +1,74 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.cbioportal.model.ClinicalAttributeCount; +import org.cbioportal.service.ClinicalAttributeService; +import org.cbioportal.web.config.InternalApiTags; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.ClinicalAttributeCountFilter; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = InternalApiTags.CLINICAL_ATTRIBUTES_COUNT, description = " ") +public class ClinicalAttributeCountController { + + @Autowired + private ClinicalAttributeService clinicalAttributeService; + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-attributes/counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get counts for clinical attributes according to their data availability for selected samples/patients") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalAttributeCount.class)))) + public ResponseEntity> getClinicalAttributeCounts( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedClinicalAttributeCountFilter") ClinicalAttributeCountFilter interceptedClinicalAttributeCountFilter, + @Parameter(required = true, description = "List of SampleIdentifiers or Sample List ID") + @Valid @RequestBody(required = false) ClinicalAttributeCountFilter clinicalAttributeCountFilter) { + + List clinicalAttributeCountList; + if (interceptedClinicalAttributeCountFilter.getSampleListId() != null) { + clinicalAttributeCountList = clinicalAttributeService.getClinicalAttributeCountsBySampleListId( + interceptedClinicalAttributeCountFilter.getSampleListId()); + } else { + List sampleIdentifiers = interceptedClinicalAttributeCountFilter.getSampleIdentifiers(); + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + for (SampleIdentifier sampleIdentifier : sampleIdentifiers) { + studyIds.add(sampleIdentifier.getStudyId()); + sampleIds.add(sampleIdentifier.getSampleId()); + } + clinicalAttributeCountList = clinicalAttributeService.getClinicalAttributeCountsBySampleIds(studyIds, sampleIds); + } + + return new ResponseEntity<>(clinicalAttributeCountList, HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/ClinicalDataController.java b/src/main/java/org/cbioportal/web/ClinicalDataController.java new file mode 100644 index 00000000000..1831c3b5689 --- /dev/null +++ b/src/main/java/org/cbioportal/web/ClinicalDataController.java @@ -0,0 +1,251 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.CancerStudy; +import org.cbioportal.model.ClinicalData; +import org.cbioportal.service.ClinicalDataService; +import org.cbioportal.service.exception.PatientNotFoundException; +import org.cbioportal.service.exception.SampleNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.ClinicalDataIdentifier; +import org.cbioportal.web.parameter.ClinicalDataMultiStudyFilter; +import org.cbioportal.web.parameter.ClinicalDataSingleStudyFilter; +import org.cbioportal.web.parameter.ClinicalDataType; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.ClinicalDataSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.CLINICAL_DATA, description = " ") +public class ClinicalDataController { + + public static final int CLINICAL_DATA_MAX_PAGE_SIZE = 10000000; + private static final String CLINICAL_DATA_DEFAULT_PAGE_SIZE = "10000000"; + + @Autowired + private ClinicalDataService clinicalDataService; + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}/clinical-data", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all clinical data of a sample in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalData.class)))) + public ResponseEntity> getAllClinicalDataOfSampleInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Sample ID e.g. TCGA-OR-A5J2-01") + @PathVariable String sampleId, + @Parameter(description = "Attribute ID e.g. CANCER_TYPE") + @RequestParam(required = false) String attributeId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(CLINICAL_DATA_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = CLINICAL_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ClinicalDataSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws SampleNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.getMetaSampleClinicalData( + studyId, sampleId, attributeId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalDataService.getAllClinicalDataOfSampleInStudy( + studyId, sampleId, attributeId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/clinical-data", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all clinical data of a patient in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalData.class)))) + public ResponseEntity> getAllClinicalDataOfPatientInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Patient ID e.g. TCGA-OR-A5J2") + @PathVariable String patientId, + @Parameter(description = "Attribute ID e.g. AGE") + @RequestParam(required = false) String attributeId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(CLINICAL_DATA_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = CLINICAL_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ClinicalDataSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.getMetaPatientClinicalData( + studyId, patientId, attributeId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalDataService.getAllClinicalDataOfPatientInStudy( + studyId, patientId, attributeId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/clinical-data", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all clinical data in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalData.class)))) + public ResponseEntity> getAllClinicalDataInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Attribute ID e.g. CANCER_TYPE") + @RequestParam(required = false) String attributeId, + @Parameter(description = "Type of the clinical data") + @RequestParam(defaultValue = "SAMPLE") ClinicalDataType clinicalDataType, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(CLINICAL_DATA_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = CLINICAL_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ClinicalDataSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.getMetaAllClinicalData(studyId, + attributeId, clinicalDataType.name()).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalDataService.getAllClinicalDataInStudy(studyId, attributeId, + clinicalDataType.name(), projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/clinical-data/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch clinical data by patient IDs or sample IDs (specific study)") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalData.class)))) + public ResponseEntity> fetchAllClinicalDataInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Type of the clinical data") + @RequestParam(defaultValue = "SAMPLE") ClinicalDataType clinicalDataType, + @Parameter(required = true, description = "List of patient or sample IDs and attribute IDs") + @Valid @RequestBody ClinicalDataSingleStudyFilter clinicalDataSingleStudyFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.fetchMetaClinicalDataInStudy( + studyId, clinicalDataSingleStudyFilter.getIds(), clinicalDataSingleStudyFilter.getAttributeIds(), + clinicalDataType.name()).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalDataService.fetchAllClinicalDataInStudy(studyId, clinicalDataSingleStudyFilter.getIds(), + clinicalDataSingleStudyFilter.getAttributeIds(), clinicalDataType.name(), projection.name()), + HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-data/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch clinical data by patient IDs or sample IDs (all studies)") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalData.class)))) + public ResponseEntity> fetchClinicalData( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataMultiStudyFilter") ClinicalDataMultiStudyFilter interceptedClinicalDataMultiStudyFilter, + @Parameter(description = "Type of the clinical data") + @RequestParam(defaultValue = "SAMPLE") ClinicalDataType clinicalDataType, + @Parameter(required = true, description = "List of patient or sample identifiers and attribute IDs") + @Valid @RequestBody(required = false) ClinicalDataMultiStudyFilter clinicalDataMultiStudyFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + List studyIds = new ArrayList<>(); + List ids = new ArrayList<>(); + + for (ClinicalDataIdentifier identifier : interceptedClinicalDataMultiStudyFilter.getIdentifiers()) { + studyIds.add(identifier.getStudyId()); + ids.add(identifier.getEntityId()); + } + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.fetchMetaClinicalData(studyIds, ids, + interceptedClinicalDataMultiStudyFilter.getAttributeIds(), clinicalDataType.name()).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalDataService.fetchClinicalData(studyIds, ids, interceptedClinicalDataMultiStudyFilter.getAttributeIds(), + clinicalDataType.name(), projection.name()), HttpStatus.OK); + } + } +} diff --git a/web/src/main/java/org/cbioportal/web/ClinicalDataEnrichmentController.java b/src/main/java/org/cbioportal/web/ClinicalDataEnrichmentController.java similarity index 82% rename from web/src/main/java/org/cbioportal/web/ClinicalDataEnrichmentController.java rename to src/main/java/org/cbioportal/web/ClinicalDataEnrichmentController.java index ffc5e754c82..7e880875916 100644 --- a/web/src/main/java/org/cbioportal/web/ClinicalDataEnrichmentController.java +++ b/src/main/java/org/cbioportal/web/ClinicalDataEnrichmentController.java @@ -1,14 +1,13 @@ package org.cbioportal.web; -import java.util.ArrayList; -import java.util.Collection; -import java.util.List; -import java.util.Map; -import java.util.Set; -import java.util.stream.Collectors; - -import javax.validation.Valid; - +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; import org.apache.commons.collections4.map.MultiKeyMap; import org.cbioportal.model.ClinicalAttribute; import org.cbioportal.model.ClinicalDataEnrichment; @@ -32,15 +31,18 @@ import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RestController; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import springfox.documentation.annotations.ApiIgnore; +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.stream.Collectors; @InternalApi @RestController +@RequestMapping("/api") @Validated -@Api(tags = "Clinical Data Enrichments", description = " ") +@Tag(name = "Clinical Data Enrichments", description = " ") public class ClinicalDataEnrichmentController { @Autowired @@ -54,13 +56,15 @@ public class ClinicalDataEnrichmentController { @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/clinical-data-enrichments/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical data enrichments for the sample groups") + @Operation(description = "Fetch clinical data enrichments for the sample groups") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalDataEnrichment.class)))) public ResponseEntity> fetchClinicalEnrichments( - @ApiParam(required = true, value = "List of altered and unaltered Sample/Patient IDs") + @Parameter(required = true, description = "List of altered and unaltered Sample/Patient IDs") @Valid @RequestBody(required = false) GroupFilter groupFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. @Valid @RequestAttribute(required = false, value = "interceptedGroupFilter") GroupFilter interceptedGroupFilter) { List studyIds = interceptedGroupFilter.getGroups().stream() diff --git a/src/main/java/org/cbioportal/web/ClinicalEventController.java b/src/main/java/org/cbioportal/web/ClinicalEventController.java new file mode 100644 index 00000000000..08ff9a60357 --- /dev/null +++ b/src/main/java/org/cbioportal/web/ClinicalEventController.java @@ -0,0 +1,123 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.ClinicalEvent; +import org.cbioportal.service.ClinicalEventService; +import org.cbioportal.service.exception.PatientNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.InternalApiTags; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.ClinicalEventSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = InternalApiTags.CLINICAL_EVENTS, description = " ") +public class ClinicalEventController { + + @Autowired + private ClinicalEventService clinicalEventService; + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/clinical-events", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all clinical events of a patient in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalEvent.class)))) + public ResponseEntity> getAllClinicalEventsOfPatientInStudy( + @Parameter(required = true, description = "Study ID e.g. lgg_ucsf_2014") + @PathVariable String studyId, + @Parameter(required = true, description = "Patient ID e.g. P01") + @PathVariable String patientId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ClinicalEventSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalEventService.getMetaPatientClinicalEvents( + studyId, patientId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalEventService.getAllClinicalEventsOfPatientInStudy( + studyId, patientId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/clinical-events", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all clinical events in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalEvent.class)))) + public ResponseEntity> getAllClinicalEventsInStudy( + @Parameter(required = true, description = "Study ID e.g. lgg_ucsf_2014") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ClinicalEventSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalEventService.getMetaClinicalEvents( + studyId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + clinicalEventService.getAllClinicalEventsInStudy( + studyId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } +} diff --git a/src/main/java/org/cbioportal/web/CoExpressionController.java b/src/main/java/org/cbioportal/web/CoExpressionController.java new file mode 100644 index 00000000000..fd71a7fabc7 --- /dev/null +++ b/src/main/java/org/cbioportal/web/CoExpressionController.java @@ -0,0 +1,82 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.cbioportal.model.CoExpression; +import org.cbioportal.model.EntityType; +import org.cbioportal.service.CoExpressionService; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.CoExpressionFilter; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Co-Expressions", description = " ") +public class CoExpressionController { + + @Autowired + private CoExpressionService coExpressionService; + + // requires permission to access both molecularProfileIdA and molecularProfileIdB because service layer does not enforce requirement that both profiles are in the same study + @PreAuthorize("hasPermission(#molecularProfileIdA, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ) and hasPermission(#molecularProfileIdB, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/co-expressions/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Calculates correlations between a genetic entity from a specific profile and another profile from the same study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CoExpression.class)))) + public ResponseEntity> fetchCoExpressions( + @Parameter(required = true, description = "Molecular Profile ID from the Genetic Entity referenced in the co-expression filter e.g. acc_tcga_rna_seq_v2_mrna") + @RequestParam String molecularProfileIdA, + @Parameter(required = true, description = "Molecular Profile ID (can be the same as molecularProfileIdA) e.g. acc_tcga_rna_seq_v2_mrna") + @RequestParam String molecularProfileIdB, + @Parameter(required = true, description = "List of Sample IDs/Sample List ID and Entrez Gene ID/Gene set ID") + @Valid @RequestBody CoExpressionFilter coExpressionFilter, + @Parameter(description = "Threshold") + @RequestParam(defaultValue = "0.3") Double threshold) throws Exception { + + List coExpressionList; + String geneticEntityId = null; + EntityType geneticEntityType = null; + + if (coExpressionFilter.getEntrezGeneId() != null) { + geneticEntityId = coExpressionFilter.getEntrezGeneId().toString(); + geneticEntityType = EntityType.GENE; + } else { + geneticEntityId = coExpressionFilter.getGenesetId(); + geneticEntityType = EntityType.GENESET; + } + + if (coExpressionFilter.getSampleListId() != null) { + coExpressionList = coExpressionService.getCoExpressions(geneticEntityId, + geneticEntityType, coExpressionFilter.getSampleListId(), molecularProfileIdA, molecularProfileIdB, + threshold); + } else { + coExpressionList = coExpressionService.fetchCoExpressions(geneticEntityId, + geneticEntityType, coExpressionFilter.getSampleIds(), molecularProfileIdA, molecularProfileIdB, + threshold); + } + + return new ResponseEntity<>(coExpressionList, HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/CopyNumberSegmentController.java b/src/main/java/org/cbioportal/web/CopyNumberSegmentController.java new file mode 100644 index 00000000000..c16406066f1 --- /dev/null +++ b/src/main/java/org/cbioportal/web/CopyNumberSegmentController.java @@ -0,0 +1,136 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.CopyNumberSeg; +import org.cbioportal.service.CopyNumberSegmentService; +import org.cbioportal.service.exception.SampleNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.cbioportal.web.parameter.sort.CopyNumberSegmentSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.COPY_NUMBER_SEGMENTS, description = " ") +public class CopyNumberSegmentController { + + private static final int COPY_NUMBER_SEGMENT_MAX_PAGE_SIZE = 20000; + private static final String COPY_NUMBER_SEGMENT_DEFAULT_PAGE_SIZE = "20000"; + + @Autowired + private CopyNumberSegmentService copyNumberSegmentService; + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}/copy-number-segments", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get copy number segments in a sample in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CopyNumberSeg.class)))) + public ResponseEntity> getCopyNumberSegmentsInSampleInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Sample ID e.g. TCGA-OR-A5J2-01") + @PathVariable String sampleId, + @Parameter(description = "Chromosome") + @RequestParam(required = false) String chromosome, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(COPY_NUMBER_SEGMENT_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = COPY_NUMBER_SEGMENT_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) CopyNumberSegmentSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws SampleNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, copyNumberSegmentService + .getMetaCopyNumberSegmentsInSampleInStudy(studyId, sampleId, chromosome).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + copyNumberSegmentService.getCopyNumberSegmentsInSampleInStudy(studyId, sampleId, chromosome, + projection.name(), pageSize, pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), + direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/copy-number-segments/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch copy number segments by sample ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CopyNumberSeg.class)))) + public ResponseEntity> fetchCopyNumberSegments( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @RequestAttribute(required = false, value = "interceptedSampleIdentifiers") List interceptedSampleIdentifiers, + @Parameter(required = true, description = "List of sample identifiers") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody(required = false) List sampleIdentifiers, + @Parameter(description = "Chromosome") + @RequestParam(required = false) String chromosome, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + + for (SampleIdentifier sampleIdentifier : interceptedSampleIdentifiers) { + studyIds.add(sampleIdentifier.getStudyId()); + sampleIds.add(sampleIdentifier.getSampleId()); + } + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, copyNumberSegmentService + .fetchMetaCopyNumberSegments(studyIds, sampleIds, chromosome).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + copyNumberSegmentService.fetchCopyNumberSegments(studyIds, sampleIds, chromosome, projection.name()), + HttpStatus.OK); + } + } +} diff --git a/src/main/java/org/cbioportal/web/CosmicCountController.java b/src/main/java/org/cbioportal/web/CosmicCountController.java new file mode 100644 index 00000000000..b696179554a --- /dev/null +++ b/src/main/java/org/cbioportal/web/CosmicCountController.java @@ -0,0 +1,49 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.CosmicMutation; +import org.cbioportal.service.CosmicCountService; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController +@Validated +@Tag(name = "Cosmic Counts", description = " ") +public class CosmicCountController { + + private static final int COSMIC_COUNT_MAX_PAGE_SIZE = 50000; + + @Autowired + private CosmicCountService cosmicCountService; + + @RequestMapping(value = "/api/cosmic-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get counts within the COSMIC database by keywords") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CosmicMutation.class)))) + public ResponseEntity> fetchCosmicCounts( + @Parameter(required = true, description = "List of keywords") + @Size(min = 1, max = COSMIC_COUNT_MAX_PAGE_SIZE) + @RequestBody List keywords) { + + return new ResponseEntity<>(cosmicCountService.fetchCosmicCountsByKeywords(keywords), HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/DataAccessTokenController.java b/src/main/java/org/cbioportal/web/DataAccessTokenController.java new file mode 100644 index 00000000000..fb39a98b326 --- /dev/null +++ b/src/main/java/org/cbioportal/web/DataAccessTokenController.java @@ -0,0 +1,121 @@ +/* +* This file is part of cBioPortal. +* +* cBioPortal is free software: you can redistribute it and/or modify +* it under the terms of the GNU Affero General Public License as +* published by the Free Software Foundation, either version 3 of the +* License. +* +* This program is distributed in the hope that it will be useful, +* but WITHOUT ANY WARRANTY; without even the implied warranty of +* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +* GNU Affero General Public License for more details. +* +* You should have received a copy of the GNU Affero General Public License +* along with this program. If not, see . +*/ + +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.apache.commons.lang3.StringUtils; +import org.cbioportal.model.DataAccessToken; +import org.cbioportal.service.DataAccessTokenService; +import org.cbioportal.service.exception.DataAccessTokenNoUserIdentityException; +import org.cbioportal.service.exception.DataAccessTokenProhibitedUserException; +import org.cbioportal.utils.config.annotation.ConditionalOnProperty; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.core.Authentication; +import org.springframework.security.core.authority.SimpleGrantedAuthority; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.PostMapping; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; +import org.springframework.web.client.HttpClientErrorException; + +import java.io.IOException; +import java.util.Arrays; +import java.util.HashSet; +import java.util.List; +import java.util.Set; + +@InternalApi +@Validated +@RestController +@ConditionalOnProperty(name = "dat.method", havingValue = "oauth2", isNot = true, matchIfMissing = true) +@Tag(name = "Data Access Tokens", description = " ") +public class DataAccessTokenController { + + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-token") + @Operation(description = "Create a new data access token") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity downloadDataAccessToken(Authentication authentication, + HttpServletRequest request, HttpServletResponse response) throws IOException { + throw new UnsupportedOperationException("this endpoint is only enabled when dat is set to oauth2."); + } + + // retrieve and trigger download OAuth2 offline token + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-token/oauth2") + @Parameter(hidden = true) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity downloadOAuth2DataAccessToken(HttpServletRequest request, HttpServletResponse response) throws IOException { + throw new UnsupportedOperationException("this endpoint is only enabled when dat is set to oauth2."); + } + + @RequestMapping(method = RequestMethod.POST, value = "/api/data-access-tokens", produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all data access tokens") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = DataAccessToken.class))) + public ResponseEntity createDataAccessToken(Authentication authentication) throws HttpClientErrorException { + throw new UnsupportedOperationException("this endpoint is only enabled when dat is set to oauth2."); + } + + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-tokens") + @Operation(description = "Retrieve all data access tokens") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = DataAccessToken.class)))) + public ResponseEntity> getAllDataAccessTokens(HttpServletRequest request, + Authentication authentication) { + throw new UnsupportedOperationException("this endpoint is only enabled when dat is set to oauth2."); + } + + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-tokens/{token}") + @Operation(description = "Retrieve an existing data access token") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = DataAccessToken.class))) + public ResponseEntity getDataAccessToken( + @Parameter(required = true, description = "token") @PathVariable String token) { + throw new UnsupportedOperationException("this endpoint is only enabled when dat is set to oauth2."); + + } + + @RequestMapping(method = RequestMethod.DELETE, value = "/api/data-access-tokens") + @Operation(description = "Delete all data access tokens") + public void revokeAllDataAccessTokens(Authentication authentication) { + throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); + } + + @RequestMapping(method = RequestMethod.DELETE, value = "/api/data-access-tokens/{token}") + @Operation(description = "Delete a data access token") + public void revokeDataAccessToken(@Parameter(required = true, description = "token") @PathVariable String token) { + throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); + } +} diff --git a/web/src/main/java/org/cbioportal/web/DiscreteCopyNumberController.java b/src/main/java/org/cbioportal/web/DiscreteCopyNumberController.java similarity index 77% rename from web/src/main/java/org/cbioportal/web/DiscreteCopyNumberController.java rename to src/main/java/org/cbioportal/web/DiscreteCopyNumberController.java index 83d842ed9cd..5a865c054a0 100644 --- a/web/src/main/java/org/cbioportal/web/DiscreteCopyNumberController.java +++ b/src/main/java/org/cbioportal/web/DiscreteCopyNumberController.java @@ -1,16 +1,19 @@ package org.cbioportal.web; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.CopyNumberCount; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; import org.cbioportal.model.DiscreteCopyNumberData; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.DiscreteCopyNumberService; import org.cbioportal.service.exception.MolecularProfileNotFoundException; import org.cbioportal.web.config.PublicApiTags; import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.CopyNumberCountIdentifier; import org.cbioportal.web.parameter.DiscreteCopyNumberEventType; import org.cbioportal.web.parameter.DiscreteCopyNumberFilter; import org.cbioportal.web.parameter.HeaderKeyConstants; @@ -20,6 +23,7 @@ import org.springframework.http.HttpStatus; import org.springframework.http.MediaType; import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; import org.springframework.validation.annotation.Validated; import org.springframework.web.bind.annotation.PathVariable; import org.springframework.web.bind.annotation.RequestBody; @@ -27,17 +31,14 @@ import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RequestParam; import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; -import javax.validation.Valid; -import javax.validation.constraints.Size; -import java.util.ArrayList; import java.util.List; @PublicApi -@RestController +@RestController() +@RequestMapping("/api") @Validated -@Api(tags = PublicApiTags.DISCRETE_COPY_NUMBER_ALTERATIONS, description = " ") +@Tag(name = PublicApiTags.DISCRETE_COPY_NUMBER_ALTERATIONS, description = " ") public class DiscreteCopyNumberController { @Autowired @@ -46,15 +47,17 @@ public class DiscreteCopyNumberController { @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/discrete-copy-number", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get discrete copy number alterations in a molecular profile") + @Operation(description = "Get discrete copy number alterations in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = DiscreteCopyNumberData.class)))) public ResponseEntity> getDiscreteCopyNumbersInMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_gistic") + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_gistic") @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "Sample List ID e.g. acc_tcga_all") + @Parameter(required = true, description = "Sample List ID e.g. acc_tcga_all") @RequestParam String sampleListId, - @ApiParam("Type of the copy number event") + @Parameter(description = "Type of the copy number event") @RequestParam(defaultValue = "HOMDEL_AND_AMP") DiscreteCopyNumberEventType discreteCopyNumberEventType, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { if (projection == Projection.META) { @@ -75,15 +78,17 @@ public ResponseEntity> getDiscreteCopyNumbersInMole @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/discrete-copy-number/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch discrete copy number alterations in a molecular profile by sample ID") + @Operation(description = "Fetch discrete copy number alterations in a molecular profile by sample ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = DiscreteCopyNumberData.class)))) public ResponseEntity> fetchDiscreteCopyNumbersInMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_gistic") + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_gistic") @PathVariable String molecularProfileId, - @ApiParam("Type of the copy number event") + @Parameter(description = "Type of the copy number event") @RequestParam(defaultValue = "HOMDEL_AND_AMP") DiscreteCopyNumberEventType discreteCopyNumberEventType, - @ApiParam(required = true, value = "List of Sample IDs/Sample List ID and Entrez Gene IDs") + @Parameter(required = true, description = "List of Sample IDs/Sample List ID and Entrez Gene IDs") @Valid @RequestBody DiscreteCopyNumberFilter discreteCopyNumberFilter, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { diff --git a/src/main/java/org/cbioportal/web/DiscreteCopyNumberCountController.java b/src/main/java/org/cbioportal/web/DiscreteCopyNumberCountController.java new file mode 100644 index 00000000000..da8952d57ee --- /dev/null +++ b/src/main/java/org/cbioportal/web/DiscreteCopyNumberCountController.java @@ -0,0 +1,71 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.CopyNumberCount; +import org.cbioportal.service.DiscreteCopyNumberService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.InternalApiTags; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.CopyNumberCountIdentifier; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = InternalApiTags.DISCRETE_COPY_NUMBER_ALTERATION_COUNTS, description = " ") +public class DiscreteCopyNumberCountController { + + private static final int COPY_NUMBER_COUNT_MAX_PAGE_SIZE = 50000; + + @Autowired + private DiscreteCopyNumberService discreteCopyNumberService; + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/discrete-copy-number-counts/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get counts of specific genes and alterations within a CNA molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CopyNumberCount.class)))) + public ResponseEntity> fetchCopyNumberCounts( + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_gistic") + @PathVariable String molecularProfileId, + @Parameter(required = true, description = "List of copy number count identifiers") + @Size(min = 1, max = COPY_NUMBER_COUNT_MAX_PAGE_SIZE) + @RequestBody List copyNumberCountIdentifiers) + throws MolecularProfileNotFoundException { + + List entrezGeneIds = new ArrayList<>(); + List alterations = new ArrayList<>(); + + for (CopyNumberCountIdentifier copyNumberCountIdentifier : copyNumberCountIdentifiers) { + + entrezGeneIds.add(copyNumberCountIdentifier.getEntrezGeneId()); + alterations.add(copyNumberCountIdentifier.getAlteration()); + } + + return new ResponseEntity<>(discreteCopyNumberService.fetchCopyNumberCounts(molecularProfileId, entrezGeneIds, + alterations), HttpStatus.OK); + } +} diff --git a/web/src/main/java/org/cbioportal/web/DocRedirectController.java b/src/main/java/org/cbioportal/web/DocRedirectController.java similarity index 94% rename from web/src/main/java/org/cbioportal/web/DocRedirectController.java rename to src/main/java/org/cbioportal/web/DocRedirectController.java index d99c780a540a..e04443556f0 100644 --- a/web/src/main/java/org/cbioportal/web/DocRedirectController.java +++ b/src/main/java/org/cbioportal/web/DocRedirectController.java @@ -1,12 +1,11 @@ package org.cbioportal.web; -import org.springframework.stereotype.Controller; +import jakarta.servlet.http.HttpServletRequest; import org.springframework.web.bind.annotation.GetMapping; import org.springframework.web.bind.annotation.RequestParam; import org.springframework.web.servlet.mvc.support.RedirectAttributes; import org.springframework.web.servlet.view.RedirectView; -import javax.servlet.http.HttpServletRequest; import java.util.regex.Matcher; import java.util.regex.Pattern; @@ -15,7 +14,7 @@ * This redirect puts the api-doc json in the specified path so that the swagger UI works * and the frontend can pull the json. */ -@Controller +//@Controller public class DocRedirectController { @GetMapping("/api-docs") public RedirectView docRedirect( diff --git a/src/main/java/org/cbioportal/web/ExpressionEnrichmentController.java b/src/main/java/org/cbioportal/web/ExpressionEnrichmentController.java new file mode 100644 index 00000000000..a32ffd37a1d --- /dev/null +++ b/src/main/java/org/cbioportal/web/ExpressionEnrichmentController.java @@ -0,0 +1,120 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.cbioportal.model.EnrichmentType; +import org.cbioportal.model.ExpressionEnrichment; +import org.cbioportal.model.GenericAssayEnrichment; +import org.cbioportal.model.GenomicEnrichment; +import org.cbioportal.model.MolecularProfileCaseIdentifier; +import org.cbioportal.service.ExpressionEnrichmentService; +import org.cbioportal.service.exception.GenericAssayNotFoundException; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.MolecularProfileCasesGroupFilter; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.Collection; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.stream.Collectors; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Enrichments", description = " ") +public class ExpressionEnrichmentController { + @Autowired + private ExpressionEnrichmentService expressionEnrichmentService; + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/expression-enrichments/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch genomic enrichments in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenomicEnrichment.class)))) + public ResponseEntity> fetchGenomicEnrichments( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(description = "Type of the enrichment e.g. SAMPLE or PATIENT") + @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, + @Parameter(required = true, description = "List of groups containing sample and molecular profile identifiers") + @Valid @RequestBody(required = false) List groups, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters) throws MolecularProfileNotFoundException { + + return new ResponseEntity<>( + fetchExpressionEnrichments(enrichmentType, interceptedMolecularProfileCasesGroupFilters, false), + HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/generic-assay-enrichments/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch generic assay enrichments in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayEnrichment.class)))) + public ResponseEntity> fetchGenericAssayEnrichments( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(description = "Type of the enrichment e.g. SAMPLE or PATIENT") + @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, + @Parameter(required = true, description = "List of groups containing sample and molecular profile identifiers") + @Valid @RequestBody(required = false) List groups, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters) + throws MolecularProfileNotFoundException, UnsupportedOperationException, GenericAssayNotFoundException { + + return new ResponseEntity<>( + fetchExpressionEnrichments(enrichmentType, interceptedMolecularProfileCasesGroupFilters, true), + HttpStatus.OK); + } + + private List fetchExpressionEnrichments(EnrichmentType enrichmentType, + List interceptedMolecularProfileCasesGroupFilters, + Boolean isRequestForGenericAssayEnrichments) throws MolecularProfileNotFoundException { + + Map> groupCaseIdentifierSet = interceptedMolecularProfileCasesGroupFilters + .stream().collect(Collectors.toMap(MolecularProfileCasesGroupFilter::getName, + MolecularProfileCasesGroupFilter::getMolecularProfileCaseIdentifiers)); + + Set molecularProfileIds = groupCaseIdentifierSet.values().stream() + .flatMap(molecularProfileCaseSet -> molecularProfileCaseSet.stream() + .map(MolecularProfileCaseIdentifier::getMolecularProfileId)) + .collect(Collectors.toSet()); + + if (molecularProfileIds.size() > 1) { + throw new UnsupportedOperationException("Multi-study expression enrichments is not yet implemented"); + } + + if (isRequestForGenericAssayEnrichments) { + return (List) expressionEnrichmentService.getGenericAssayNumericalEnrichments( + molecularProfileIds.iterator().next(), groupCaseIdentifierSet, enrichmentType); + } + + return (List) expressionEnrichmentService.getGenomicEnrichments(molecularProfileIds.iterator().next(), + groupCaseIdentifierSet, enrichmentType); + + } +} diff --git a/src/main/java/org/cbioportal/web/GeneController.java b/src/main/java/org/cbioportal/web/GeneController.java new file mode 100644 index 00000000000..51774d20bfa --- /dev/null +++ b/src/main/java/org/cbioportal/web/GeneController.java @@ -0,0 +1,130 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.Gene; +import org.cbioportal.service.GeneService; +import org.cbioportal.service.exception.GeneNotFoundException; +import org.cbioportal.service.exception.GeneWithMultipleEntrezIdsException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.GeneIdType; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.GeneSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@PublicApi +@RestController +@Validated +@Tag(name = PublicApiTags.GENES, description = " ") +public class GeneController { + + @Autowired + private GeneService geneService; + + @RequestMapping(value = "/api/genes", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all genes") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Gene.class)))) + public ResponseEntity> getAllGenes( + @Parameter(description = "Search keyword that applies to hugo gene symbol of the genes") + @RequestParam(required = false) String keyword, + @Parameter(description = "Alias of the gene") + @RequestParam(required = false) String alias, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) GeneSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, geneService.getMetaGenes(keyword, alias).getTotalCount() + .toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + geneService.getAllGenes(keyword, alias, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @RequestMapping(value = "/api/genes/{geneId}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get a gene") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Gene.class))) + public ResponseEntity getGene( + @Parameter(required = true, description = "Entrez Gene ID or Hugo Gene Symbol e.g. 1 or A1BG") + @PathVariable String geneId) throws GeneNotFoundException, GeneWithMultipleEntrezIdsException { + + return new ResponseEntity<>(geneService.getGene(geneId), HttpStatus.OK); + } + + @RequestMapping(value = "/api/genes/{geneId}/aliases", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get aliases of a gene") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = String.class)))) + public ResponseEntity> getAliasesOfGene( + @Parameter(required = true, description = "Entrez Gene ID or Hugo Gene Symbol e.g. 1 or A1BG") + @PathVariable String geneId) throws GeneNotFoundException, GeneWithMultipleEntrezIdsException { + + return new ResponseEntity<>(geneService.getAliasesOfGene(geneId), HttpStatus.OK); + } + + @RequestMapping(value = "/api/genes/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch genes by ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Gene.class)))) + public ResponseEntity> fetchGenes( + @RequestParam(defaultValue = "ENTREZ_GENE_ID") GeneIdType geneIdType, + @Parameter(required = true, description = "List of Gene IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody List geneIds, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, geneService.fetchMetaGenes(geneIds, geneIdType.name()) + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>(geneService.fetchGenes(geneIds, geneIdType.name(), projection.name()), + HttpStatus.OK); + } + } +} diff --git a/src/main/java/org/cbioportal/web/GenePanelController.java b/src/main/java/org/cbioportal/web/GenePanelController.java new file mode 100644 index 00000000000..9bd73ff27bd --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenePanelController.java @@ -0,0 +1,127 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Hidden; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.extensions.Extension; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.ExampleObject; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.GenePanel; +import org.cbioportal.service.GenePanelService; +import org.cbioportal.service.exception.GenePanelNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.GenePanelSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.GENE_PANELS, description = " ") +public class GenePanelController { + + @Autowired + private GenePanelService genePanelService; + + @Hidden + @RequestMapping(value = "/gene-panels/", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + public ResponseEntity> getAllGenePanels_trailing( + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @RequestParam(required = false) GenePanelSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) { + return getAllGenePanels(projection, pageSize, pageNumber, sortBy, direction); + } + + @RequestMapping(value = "/gene-panels", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all gene panels") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenePanel.class)))) + public ResponseEntity> getAllGenePanels( + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) GenePanelSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, genePanelService.getMetaGenePanels() + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + genePanelService.getAllGenePanels(projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @RequestMapping(value = "/gene-panels/{genePanelId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get gene panel") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = GenePanel.class))) + public ResponseEntity getGenePanel( + @Parameter(required = true, description = "Gene Panel ID e.g. NSCLC_UNITO_2016_PANEL") + @PathVariable String genePanelId) throws GenePanelNotFoundException { + + return new ResponseEntity<>(genePanelService.getGenePanel(genePanelId), HttpStatus.OK); + } + + @RequestMapping(value = "/gene-panels/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get gene panel") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenePanel.class)))) + public ResponseEntity> fetchGenePanels( + @Parameter(required = true, description = "List of Gene Panel IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody List genePanelIds, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + return new ResponseEntity<>(genePanelService.fetchGenePanels(genePanelIds, projection.name()), HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/GenePanelDataController.java b/src/main/java/org/cbioportal/web/GenePanelDataController.java new file mode 100644 index 00000000000..6864a6c5db3 --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenePanelDataController.java @@ -0,0 +1,105 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.cbioportal.model.GenePanelData; +import org.cbioportal.model.MolecularProfileCaseIdentifier; +import org.cbioportal.service.GenePanelService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.GenePanelDataFilter; +import org.cbioportal.web.parameter.GenePanelDataMultipleStudyFilter; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.util.CollectionUtils; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.Collection; +import java.util.HashSet; +import java.util.List; +import java.util.stream.Collectors; + +@PublicApi +@RestController +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.GENE_PANEL_DATA, description = " ") +public class GenePanelDataController { + + @Autowired + private GenePanelService genePanelService; + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/gene-panel-data/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get gene panel data") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenePanelData.class)))) + public ResponseEntity> getGenePanelData( + @Parameter(required = true, description = "Molecular Profile ID e.g. nsclc_unito_2016_mutations") + @PathVariable String molecularProfileId, + @Parameter(required = true, description = "List of Sample IDs/Sample List ID and Entrez Gene IDs") + @Valid @RequestBody GenePanelDataFilter genePanelDataFilter) throws MolecularProfileNotFoundException { + + List genePanelDataList; + if (genePanelDataFilter.getSampleListId() != null) { + genePanelDataList = genePanelService.getGenePanelData(molecularProfileId, + genePanelDataFilter.getSampleListId()); + } else { + genePanelDataList = genePanelService.fetchGenePanelData(molecularProfileId, + genePanelDataFilter.getSampleIds()); + } + + return new ResponseEntity<>(genePanelDataList, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/gene-panel-data/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch gene panel data") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenePanelData.class)))) + public ResponseEntity> fetchGenePanelDataInMultipleMolecularProfiles( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedGenePanelDataMultipleStudyFilter") GenePanelDataMultipleStudyFilter interceptedGenePanelDataMultipleStudyFilter, + @Parameter(required = true, description = "Gene panel data filter object") + @RequestBody(required = false) GenePanelDataMultipleStudyFilter genePanelDataMultipleStudyFilter) { + + List genePanelDataList; + if(CollectionUtils.isEmpty(interceptedGenePanelDataMultipleStudyFilter.getMolecularProfileIds())) { + List molecularProfileSampleIdentifiers = interceptedGenePanelDataMultipleStudyFilter.getSampleMolecularIdentifiers() + .stream() + .map(sampleMolecularIdentifier -> { + MolecularProfileCaseIdentifier profileCaseIdentifier = new MolecularProfileCaseIdentifier(); + profileCaseIdentifier.setMolecularProfileId(sampleMolecularIdentifier.getMolecularProfileId()); + profileCaseIdentifier.setCaseId(sampleMolecularIdentifier.getSampleId()); + return profileCaseIdentifier; + }) + .collect(Collectors.toList()); + + genePanelDataList = genePanelService.fetchGenePanelDataInMultipleMolecularProfiles(molecularProfileSampleIdentifiers); + } else { + genePanelDataList = genePanelService.fetchGenePanelDataByMolecularProfileIds(new HashSet<>(interceptedGenePanelDataMultipleStudyFilter.getMolecularProfileIds())); + } + + return new ResponseEntity<>(genePanelDataList, HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/GenericAssayController.java b/src/main/java/org/cbioportal/web/GenericAssayController.java new file mode 100644 index 00000000000..ae10b64c88b --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenericAssayController.java @@ -0,0 +1,101 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.cbioportal.model.meta.GenericAssayMeta; +import org.cbioportal.service.GenericAssayService; +import org.cbioportal.service.exception.GenericAssayNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.GenericAssayMetaFilter; +import org.cbioportal.web.parameter.Projection; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.Arrays; +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.GENERIC_ASSAYS, description = " ") +public class GenericAssayController { + + @Autowired + private GenericAssayService genericAssayService; + + // PreAuthorize is removed for performance reason + @RequestMapping(value = "/generic_assay_meta/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch meta data for generic-assay by ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayMeta.class)))) + public ResponseEntity> fetchGenericAssayMeta( + @Parameter(required = true, description = "List of Molecular Profile ID or List of Stable ID") + @Valid @RequestBody GenericAssayMetaFilter genericAssayMetaFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws GenericAssayNotFoundException { + List result; + + if (genericAssayMetaFilter.getGenericAssayStableIds() == null) { + result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(null, genericAssayMetaFilter.getMolecularProfileIds(), projection.name()); + } else if (genericAssayMetaFilter.getMolecularProfileIds() == null) { + result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(genericAssayMetaFilter.getGenericAssayStableIds(), null, projection.name()); + } else { + result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(genericAssayMetaFilter.getGenericAssayStableIds(), genericAssayMetaFilter.getMolecularProfileIds(), projection.name()); + } + return new ResponseEntity<>(result, HttpStatus.OK); + } + + // PreAuthorize is removed for performance reason + @RequestMapping(value = "/generic-assay-meta/{molecularProfileId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch meta data for generic-assay by ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayMeta.class)))) + public ResponseEntity> getGenericAssayMeta( + @Parameter(required = true, description = "Molecular Profile ID") + @PathVariable String molecularProfileId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws GenericAssayNotFoundException { + List result; + + result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(null, Arrays.asList(molecularProfileId), projection.name()); + + return new ResponseEntity<>(result, HttpStatus.OK); + } + + @RequestMapping(value = "/generic-assay-meta/generic-assay/{genericAssayStableId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch meta data for generic-assay by ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayMeta.class)))) + public ResponseEntity> getGenericAssayMeta_ga( + @Parameter(required = false, description = "Generic Assay stable ID") + @PathVariable String genericAssayStableId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws GenericAssayNotFoundException { + List result; + result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Arrays.asList(genericAssayStableId), null, projection.name()); + + return new ResponseEntity<>(result, HttpStatus.OK); + } + + +} diff --git a/src/main/java/org/cbioportal/web/GenericAssayDataController.java b/src/main/java/org/cbioportal/web/GenericAssayDataController.java new file mode 100644 index 00000000000..8cfc55bdb7a --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenericAssayDataController.java @@ -0,0 +1,165 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.apache.commons.lang3.StringUtils; +import org.cbioportal.model.GenericAssayData; +import org.cbioportal.service.GenericAssayService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.GenericAssayDataMultipleStudyFilter; +import org.cbioportal.web.parameter.GenericAssayFilter; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.SampleMolecularIdentifier; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.List; +import java.util.stream.Collectors; + +@PublicApi +@RestController +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.GENERIC_ASSAY_DATA, description = " ") +public class GenericAssayDataController { + + @Autowired + private GenericAssayService genericAssayService; + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/generic-assay-data/{molecularProfileId}/generic-assay/{genericAssayStableId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get generic_assay_data in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayData.class)))) + public ResponseEntity> getGenericAssayDataInMolecularProfile( + @Parameter(required = true, description = "Molecular Profile ID") + @PathVariable String molecularProfileId, + @Parameter(required = true, description = "Generic Assay stable ID") + @PathVariable String genericAssayStableId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { + + List result; + result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData(molecularProfileId, + null, Arrays.asList(genericAssayStableId) , projection.name())); + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, String.valueOf(result.size())); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>(result, HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/generic_assay_data/{molecularProfileId}/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "fetch generic_assay_data in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayData.class)))) + public ResponseEntity> fetchGenericAssayDataInMolecularProfile( + @Parameter(required = true, description = "Molecular Profile ID") + @PathVariable String molecularProfileId, + @Parameter(required = true, description = "List of Sample IDs/Sample List ID and Generic Assay IDs") + @Valid @RequestBody GenericAssayFilter genericAssayDataFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { + + List result; + if (genericAssayDataFilter.getSampleListId() != null) { + result = filterEmptyGenericAssayData(genericAssayService.getGenericAssayData(molecularProfileId, + genericAssayDataFilter.getSampleListId(), genericAssayDataFilter.getGenericAssayStableIds(), projection.name())); + } else { + result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData(molecularProfileId, + genericAssayDataFilter.getSampleIds(), genericAssayDataFilter.getGenericAssayStableIds(), projection.name())); + } + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, String.valueOf(result.size())); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>(result, HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/generic_assay_data/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch generic_assay_data") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayData.class)))) + public ResponseEntity> fetchGenericAssayDataInMultipleMolecularProfiles( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @RequestAttribute(required = false, value = "interceptedGenericAssayDataMultipleStudyFilter") GenericAssayDataMultipleStudyFilter interceptedGenericAssayDataMultipleStudyFilter, + @Parameter(required = true, description = "List of Molecular Profile ID and Sample ID pairs or List of Molecular" + + "Profile IDs and Generic Assay IDs") + @Valid @RequestBody(required = false) GenericAssayDataMultipleStudyFilter genericAssayDataMultipleStudyFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { + + List result; + if (interceptedGenericAssayDataMultipleStudyFilter.getMolecularProfileIds() != null) { + result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData( + interceptedGenericAssayDataMultipleStudyFilter.getMolecularProfileIds(), null, + interceptedGenericAssayDataMultipleStudyFilter.getGenericAssayStableIds(), projection.name())); + } else { + + List molecularProfileIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + extractMolecularProfileAndSampleIds(interceptedGenericAssayDataMultipleStudyFilter, molecularProfileIds, sampleIds); + result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData(molecularProfileIds, + sampleIds, interceptedGenericAssayDataMultipleStudyFilter.getGenericAssayStableIds(), projection.name())); + } + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, String.valueOf(result.size())); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>(result, HttpStatus.OK); + } + } + + private void extractMolecularProfileAndSampleIds(GenericAssayDataMultipleStudyFilter molecularDataMultipleStudyFilter, List molecularProfileIds, List sampleIds) { + for (SampleMolecularIdentifier sampleMolecularIdentifier : molecularDataMultipleStudyFilter.getSampleMolecularIdentifiers()) { + molecularProfileIds.add(sampleMolecularIdentifier.getMolecularProfileId()); + sampleIds.add(sampleMolecularIdentifier.getSampleId()); + } + } + + private List filterEmptyGenericAssayData(List genericAssayDataList) { + return genericAssayDataList.stream() + .filter(g -> StringUtils.isNotEmpty(g.getValue()) && !g.getValue().equals("NA")) + .collect(Collectors.toList()); + } +} diff --git a/web/src/main/java/org/cbioportal/web/GenericAssayEnrichmentController.java b/src/main/java/org/cbioportal/web/GenericAssayEnrichmentController.java similarity index 77% rename from web/src/main/java/org/cbioportal/web/GenericAssayEnrichmentController.java rename to src/main/java/org/cbioportal/web/GenericAssayEnrichmentController.java index 294c580582e..8959681e09b 100644 --- a/web/src/main/java/org/cbioportal/web/GenericAssayEnrichmentController.java +++ b/src/main/java/org/cbioportal/web/GenericAssayEnrichmentController.java @@ -1,8 +1,13 @@ package org.cbioportal.web; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; import org.cbioportal.model.EnrichmentType; import org.cbioportal.model.GenericAssayBinaryEnrichment; import org.cbioportal.model.GenericAssayCategoricalEnrichment; @@ -17,15 +22,13 @@ import org.springframework.http.ResponseEntity; import org.springframework.security.access.prepost.PreAuthorize; import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestAttribute; import org.springframework.web.bind.annotation.RequestBody; import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RestController; import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RequestAttribute; -import springfox.documentation.annotations.ApiIgnore; +import org.springframework.web.bind.annotation.RestController; -import javax.validation.Valid; import java.util.Collection; import java.util.List; import java.util.Map; @@ -35,24 +38,26 @@ @InternalApi @RestController @Validated -@Api(tags = "Generic Assay Enrichment Data", description = " ") +@Tag(name = "Generic Assay Enrichment Data", description = " ") public class GenericAssayEnrichmentController { @Autowired private ExpressionEnrichmentService expressionEnrichmentService; @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic-assay-categorical-enrichments/fetch", + @RequestMapping(value = "/api/generic-assay-categorical-enrichments/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch generic assay categorical data enrichments in a molecular profile") + @Operation(description = "Fetch generic assay categorical data enrichments in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayCategoricalEnrichment.class)))) public ResponseEntity> fetchGenericAssayCategoricalDataEnrichmentInMultipleMolecularProfiles( - @ApiIgnore + @Parameter(hidden = true) @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiParam("Type of the enrichment e.g. SAMPLE or PATIENT") + @Parameter(description = "Type of the enrichment e.g. SAMPLE or PATIENT") @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, - @ApiParam(required = true, value = "List of groups containing sample and molecular profile identifiers") + @Parameter(required = true, description = "List of groups containing sample and molecular profile identifiers") @Valid @RequestBody(required = false) List groups, - @ApiIgnore + @Parameter(hidden = true) @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters) throws MolecularProfileNotFoundException, UnsupportedOperationException { @@ -61,18 +66,20 @@ public ResponseEntity> fetchGenericAssay } @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic-assay-binary-enrichments/fetch", + @RequestMapping(value = "/api/generic-assay-binary-enrichments/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch generic assay binary data enrichments in a molecular profile") + @Operation(description = "Fetch generic assay binary data enrichments in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayBinaryEnrichment.class)))) public ResponseEntity> fetchGenericAssayBinaryDataEnrichmentInMultipleMolecularProfiles( - @ApiIgnore + @Parameter(hidden = true) @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiParam("Type of the enrichment e.g. SAMPLE or PATIENT") + @Parameter(description = "Type of the enrichment e.g. SAMPLE or PATIENT") @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, - @ApiParam(required = true, value = "List of groups containing sample and molecular profile identifiers") + @Parameter(required = true, description = "List of groups containing sample and molecular profile identifiers") @Valid @RequestBody(required = false) List groups, - @ApiIgnore + @Parameter(hidden = true) @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters) throws MolecularProfileNotFoundException, UnsupportedOperationException { diff --git a/src/main/java/org/cbioportal/web/GenesetController.java b/src/main/java/org/cbioportal/web/GenesetController.java new file mode 100644 index 00000000000..0e4eeb56bcc --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenesetController.java @@ -0,0 +1,102 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.Geneset; +import org.cbioportal.service.GenesetService; +import org.cbioportal.service.exception.GenesetNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController +@Validated +@Tag(name = "Gene Sets", description = " ") +public class GenesetController { + + @Autowired + private GenesetService genesetService; + + @RequestMapping(value = "/api/genesets", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all gene sets") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Geneset.class)))) + public ResponseEntity> getAllGenesets( + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(Integer.MAX_VALUE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, genesetService.getMetaGenesets().getTotalCount() + .toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + genesetService.getAllGenesets(projection.name(), pageSize, pageNumber), HttpStatus.OK); + } + } + + @RequestMapping(value = "/api/genesets/{genesetId}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get a gene set") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Geneset.class))) + public ResponseEntity getGeneset( + @Parameter(required = true, description = "Gene set ID e.g. GNF2_ZAP70") + @PathVariable String genesetId) throws GenesetNotFoundException { + + return new ResponseEntity<>(genesetService.getGeneset(genesetId), HttpStatus.OK); + } + + @RequestMapping(value = "/api/genesets/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch gene sets by ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Geneset.class)))) + public ResponseEntity> fetchGenesets( + @Parameter(required = true, description = "List of Geneset IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody List genesetIds) { + + return new ResponseEntity<>(genesetService.fetchGenesets(genesetIds), HttpStatus.OK); + } + + @RequestMapping(value = "/api/genesets/version", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get the geneset version") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity getGenesetVersion() { + + return new ResponseEntity<>("\""+genesetService.getGenesetVersion() +"\"", HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/GenesetCorrelationController.java b/src/main/java/org/cbioportal/web/GenesetCorrelationController.java new file mode 100644 index 00000000000..1859079bbbe --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenesetCorrelationController.java @@ -0,0 +1,103 @@ +/* + * Copyright (c) 2016 The Hyve B.V. + * This code is licensed under the GNU Affero General Public License (AGPL), + * version 3, or (at your option) any later version. + */ + +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . +*/ + +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.GenesetCorrelation; +import org.cbioportal.service.GenesetCorrelationService; +import org.cbioportal.service.exception.GenesetNotFoundException; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.service.exception.SampleListNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Gene Set Correlation", description = " ") +public class GenesetCorrelationController { + + @Autowired + private GenesetCorrelationService genesetCorrelationService; + + @PreAuthorize("hasPermission(#geneticProfileId, 'GeneticProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/genesets/{genesetId}/expression-correlation/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get the genes in a gene set that have expression correlated to the gene set scores (calculated using Spearman's correlation)") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenesetCorrelation.class)))) + public ResponseEntity> fetchCorrelatedGenes( + @Parameter(required = true, description = "Gene set ID, e.g. HINATA_NFKB_MATRIX.") + @PathVariable String genesetId, + @Parameter(required = true, description = "Genetic Profile ID e.g. gbm_tcga_gsva_scores") + @RequestParam String geneticProfileId, + @Parameter(description = "Correlation threshold (for absolute correlation value, Spearman correlation)") + @Max(1) + @Min(0) + @RequestParam(defaultValue = "0.3") Double correlationThreshold, + @Parameter(description = "Identifier of pre-defined sample list with samples to query, e.g. brca_tcga_all") + @RequestParam(required = false) String sampleListId, + @Parameter(description = "Fill this one if you want to specify a subset of samples:" + + " sampleIds: custom list of samples or patients to query, e.g. [\"TCGA-A1-A0SD-01\", \"TCGA-A1-A0SE-01\"]") + @RequestBody(required = false) List sampleIds) + throws MolecularProfileNotFoundException, SampleListNotFoundException, GenesetNotFoundException { + + if (sampleListId != null && sampleListId.trim().length() > 0) { + return new ResponseEntity<>( + genesetCorrelationService.fetchCorrelatedGenes(genesetId, geneticProfileId, sampleListId, correlationThreshold.doubleValue()), + HttpStatus.OK); + } + if (sampleIds != null && sampleIds.size() > 0) { + return new ResponseEntity<>( + genesetCorrelationService.fetchCorrelatedGenes(genesetId, geneticProfileId, sampleIds, correlationThreshold.doubleValue()), + HttpStatus.OK); + } else { + return new ResponseEntity<>( + genesetCorrelationService.fetchCorrelatedGenes(genesetId, geneticProfileId, correlationThreshold.doubleValue()), + HttpStatus.OK); + } + } +} diff --git a/src/main/java/org/cbioportal/web/GenesetDataController.java b/src/main/java/org/cbioportal/web/GenesetDataController.java new file mode 100644 index 00000000000..9c911d8d18e --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenesetDataController.java @@ -0,0 +1,68 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import org.cbioportal.model.GenesetMolecularData; +import org.cbioportal.service.GenesetDataService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.service.exception.SampleListNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.GenesetDataFilterCriteria; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Gene Set Scores", description = " ") +public class GenesetDataController { + + + @Autowired + private GenesetDataService genesetDataService; + + @PreAuthorize("hasPermission(#geneticProfileId, 'GeneticProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/genetic-profiles/{geneticProfileId}/geneset-genetic-data/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch gene set \"genetic data\" items (gene set scores) by profile Id, gene set ids and sample ids") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenesetMolecularData.class)))) + public ResponseEntity> fetchGeneticDataItems( + @Parameter(required = true, description = "Genetic profile ID, e.g. gbm_tcga_gsva_scores") + @PathVariable String geneticProfileId, + @Parameter(required = true, description = "Search criteria to return the values for a given set of samples and gene set items. " + + "genesetIds: The list of identifiers for the gene sets of interest, e.g. HINATA_NFKB_MATRIX. " + + "Use one of these if you want to specify a subset of samples:" + + "(1) sampleListId: Identifier of pre-defined sample list with samples to query, e.g. brca_tcga_all " + + "or (2) sampleIds: custom list of samples or patients to query, e.g. TCGA-BH-A1EO-01, TCGA-AR-A1AR-01") + @RequestBody GenesetDataFilterCriteria genesetDataFilterCriteria) throws MolecularProfileNotFoundException, SampleListNotFoundException { + + if (genesetDataFilterCriteria.getSampleListId() != null && genesetDataFilterCriteria.getSampleListId().trim().length() > 0) { + return new ResponseEntity<>( + genesetDataService.fetchGenesetData(geneticProfileId, genesetDataFilterCriteria.getSampleListId(), + genesetDataFilterCriteria.getGenesetIds()), HttpStatus.OK); + } else { + return new ResponseEntity<>( + genesetDataService.fetchGenesetData(geneticProfileId, genesetDataFilterCriteria.getSampleIds(), + genesetDataFilterCriteria.getGenesetIds()), HttpStatus.OK); + } + } + +} diff --git a/src/main/java/org/cbioportal/web/GenesetHierarchyController.java b/src/main/java/org/cbioportal/web/GenesetHierarchyController.java new file mode 100644 index 00000000000..1efd7019138 --- /dev/null +++ b/src/main/java/org/cbioportal/web/GenesetHierarchyController.java @@ -0,0 +1,108 @@ +/* + * Copyright (c) 2016 The Hyve B.V. + * This code is licensed under the GNU Affero General Public License (AGPL), + * version 3, or (at your option) any later version. + */ + +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . +*/ + +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.GenesetHierarchyInfo; +import org.cbioportal.service.GenesetHierarchyService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.service.exception.SampleListNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Gene Set Hierarchy", description = " ") +public class GenesetHierarchyController { + + @Autowired + private GenesetHierarchyService genesetHierarchyService; + + @PreAuthorize("hasPermission(#geneticProfileId, 'GeneticProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/geneset-hierarchy/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get gene set hierarchical organization information. I.e. how different gene sets relate to other gene sets, in a hierarchy") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenesetHierarchyInfo.class)))) + public ResponseEntity> fetchGenesetHierarchyInfo( + @Parameter(required = true, description = "Genetic Profile ID e.g. gbm_tcga_gsva_scores. The final hierarchy " + + " will only include gene sets scored in the specified profile.") + @RequestParam String geneticProfileId, + @Parameter(description = "Percentile (for score calculation). Which percentile to use when determining the *representative score*") + @Max(100) + @Min(1) + @RequestParam(defaultValue = "75") Integer percentile, + @Parameter(description = "Gene set score threshold (for absolute score value). Filters out gene sets where the GSVA(like) *representative score* is under this threshold.") + @Max(1) + @Min(0) + @RequestParam(defaultValue = "0.4") Double scoreThreshold, + @Parameter(description = "p-value threshold. Filters out gene sets for which the score p-value is higher than this threshold.") + @Max(1) + @Min(0) + @RequestParam(defaultValue = "0.05") Double pvalueThreshold, + @Parameter(description = "Identifier of pre-defined sample list with samples to query, e.g. brca_tcga_all") + @RequestParam(required = false) String sampleListId, + @Parameter(description = "Fill this one if you want to specify a subset of samples:" + + " sampleIds: custom list of samples or patients to query, e.g. [\"TCGA-A1-A0SD-01\", \"TCGA-A1-A0SE-01\"]") + @RequestBody(required = false) List sampleIds) + throws MolecularProfileNotFoundException, SampleListNotFoundException { + + if (sampleListId != null && sampleListId.trim().length() > 0) { + return new ResponseEntity<>( + genesetHierarchyService.fetchGenesetHierarchyInfo(geneticProfileId, percentile, scoreThreshold, pvalueThreshold, sampleListId), + HttpStatus.OK); + } else if (sampleIds != null && sampleIds.size() > 0){ + return new ResponseEntity<>( + genesetHierarchyService.fetchGenesetHierarchyInfo(geneticProfileId, percentile, scoreThreshold, pvalueThreshold, sampleIds), + HttpStatus.OK); + } else { + return new ResponseEntity<>( + genesetHierarchyService.fetchGenesetHierarchyInfo(geneticProfileId, percentile, scoreThreshold, pvalueThreshold), + HttpStatus.OK); + } + + } +} diff --git a/src/main/java/org/cbioportal/web/IndexPageController.java b/src/main/java/org/cbioportal/web/IndexPageController.java new file mode 100644 index 00000000000..5c432ef6b17 --- /dev/null +++ b/src/main/java/org/cbioportal/web/IndexPageController.java @@ -0,0 +1,107 @@ +package org.cbioportal.web; + +import com.fasterxml.jackson.core.JsonGenerator; +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.JsonSerializer; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializerProvider; +import com.fasterxml.jackson.databind.module.SimpleModule; +import jakarta.servlet.http.HttpServletRequest; +import org.cbioportal.service.FrontendPropertiesService; +import org.cbioportal.web.util.HttpRequestUtils; +import org.json.simple.JSONObject; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.core.Authentication; +import org.springframework.security.oauth2.client.registration.ClientRegistration; +import org.springframework.security.oauth2.client.registration.ClientRegistrationRepository; +import org.springframework.security.oauth2.client.registration.InMemoryClientRegistrationRepository; +import org.springframework.security.oauth2.client.web.OAuth2AuthorizationRequestRedirectFilter; +import org.springframework.stereotype.Controller; +import org.springframework.ui.Model; +import org.springframework.web.bind.annotation.GetMapping; +import org.springframework.web.bind.annotation.RequestMapping; + +import java.io.IOException; +import java.util.Arrays; +import java.util.HashMap; +import java.util.Iterator; +import java.util.Map; + +import static org.cbioportal.service.FrontendPropertiesServiceImpl.FrontendProperty; + +@Controller +public class IndexPageController { + private static final Logger log = LoggerFactory.getLogger(IndexPageController.class); + + @Autowired + private FrontendPropertiesService frontendPropertiesService; + + @Autowired + private HttpRequestUtils requestUtils; + + @Value("${authenticate}") + private String[] authenticate; + + @Value("${saml.idp.metadata.entityid:not_defined_in_portalproperties}") + private String samlIdpEntityId; + + private final ObjectMapper mapper = new ObjectMapper(); + + private Map getFrontendProperties(HttpServletRequest request, Authentication authentication) { + String baseUrl = requestUtils.getBaseUrl(request); + Map properties = frontendPropertiesService.getFrontendProperties(); + properties.put("base_url", baseUrl); + properties.put("user_email_address", authentication != null ? authentication.getName(): "anonymousUser"); + // TODO: Support skin.user_display_name + properties.put("user_display_name", authentication != null ? authentication.getName(): "anonymousUser"); + return properties; + } + + @RequestMapping({"/", "/index", "/index.html", "/study/summary", "/results" }) + public String showIndexPage(HttpServletRequest request, Authentication authentication, Model model) + throws JsonProcessingException { + + SimpleModule simpleModule = new SimpleModule(); + simpleModule.addSerializer(String.class, new CustomFrontendPropertiesSerializer()); + mapper.registerModule(simpleModule); + + String baseUrl = requestUtils.getBaseUrl(request); + JSONObject postData = requestUtils.getPostData(request); + + model.addAttribute("propertiesJson", mapper.writeValueAsString(getFrontendProperties(request, authentication))); + model.addAttribute("frontendUrl", frontendPropertiesService.getFrontendProperty(FrontendProperty.frontendUrl)); + model.addAttribute("baseUrl", baseUrl); + model.addAttribute("contextPath", request.getContextPath()); + model.addAttribute("appVersion", frontendPropertiesService.getFrontendProperty(FrontendProperty.app_version)); + model.addAttribute("postData", postData.isEmpty() ? "undefined" : postData); + + return "index"; + } + + @GetMapping("/config_service") + public ResponseEntity getConfigService(HttpServletRequest request, Authentication authentication) { + return ResponseEntity.ok(getFrontendProperties(request, authentication)); + } + + public FrontendPropertiesService getFrontendPropertiesService() { + return frontendPropertiesService; + } + + public static class CustomFrontendPropertiesSerializer extends JsonSerializer { + @Override + public void serialize(String value, JsonGenerator jsonGenerator, SerializerProvider serializerProvider) throws IOException { + if ("true".equalsIgnoreCase(value) || "false".equalsIgnoreCase((value))) { + jsonGenerator.writeBoolean("true".equalsIgnoreCase(value)); + } else if (value != null) { + jsonGenerator.writeString(value); + } else { + jsonGenerator.writeNull(); + } + } + } +} diff --git a/web/src/main/java/org/cbioportal/web/InfoController.java b/src/main/java/org/cbioportal/web/InfoController.java similarity index 77% rename from web/src/main/java/org/cbioportal/web/InfoController.java rename to src/main/java/org/cbioportal/web/InfoController.java index 567771176e5..dbb36c8f640 100644 --- a/web/src/main/java/org/cbioportal/web/InfoController.java +++ b/src/main/java/org/cbioportal/web/InfoController.java @@ -1,7 +1,10 @@ package org.cbioportal.web; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; import org.cbioportal.model.Info; import org.cbioportal.web.config.PublicApiTags; import org.cbioportal.web.config.annotation.PublicApi; @@ -17,7 +20,7 @@ @PublicApi @RestController @Validated -@Api(tags = PublicApiTags.INFO, description = " ") +@Tag(name = PublicApiTags.INFO, description = " ") public class InfoController { @Value("${portal.version}") @@ -29,7 +32,7 @@ public class InfoController { @Value("${git.branch}") private String gitBranch; - @Value("${git.commit.id}") + @Value("${git.commit.id.full}") private String gitCommitId; @Value("${git.commit.id.abbrev}") @@ -56,8 +59,10 @@ public class InfoController { @Value("${git.dirty}") private String gitDirty; - @RequestMapping(value = "/info", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get information about the running instance") + @RequestMapping(value = "/api/info", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get information about the running instance") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Info.class))) public ResponseEntity getInfo() { Info info = new Info(); diff --git a/src/main/java/org/cbioportal/web/LoginPageController.java b/src/main/java/org/cbioportal/web/LoginPageController.java new file mode 100644 index 00000000000..4ffe9050e73 --- /dev/null +++ b/src/main/java/org/cbioportal/web/LoginPageController.java @@ -0,0 +1,71 @@ +package org.cbioportal.web; + +import jakarta.servlet.http.HttpServletRequest; +import org.apache.commons.collections.map.HashedMap; +import org.cbioportal.service.FrontendPropertiesService; +import org.cbioportal.service.FrontendPropertiesServiceImpl; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.boot.autoconfigure.condition.ConditionalOnExpression; +import org.springframework.http.MediaType; +import org.springframework.security.core.Authentication; +import org.springframework.security.oauth2.client.registration.ClientRegistration; +import org.springframework.security.oauth2.client.registration.InMemoryClientRegistrationRepository; +import org.springframework.security.oauth2.client.web.OAuth2AuthorizationRequestRedirectFilter; +import org.springframework.stereotype.Controller; +import org.springframework.ui.Model; +import org.springframework.web.bind.annotation.GetMapping; + +import java.util.Arrays; +import java.util.HashMap; +import java.util.Map; +import java.util.Objects; + +@Controller +@ConditionalOnExpression("{'oauth2','saml','optional_oauth2'}.contains('${authenticate}')") +public class LoginPageController { + private static final Logger log = LoggerFactory.getLogger(LoginPageController.class); + + @Autowired + private FrontendPropertiesService frontendPropertiesService; + + @Autowired(required = false) + private InMemoryClientRegistrationRepository clientRegistrationRepository; + + @Value("${authenticate}") + private String authenticate; + + @GetMapping(value = "/login", produces = MediaType.APPLICATION_JSON_VALUE) + public String showLoginPage(HttpServletRequest request, Authentication authentication, Model model) { + + Map oauth2AuthenticationUrls = getOauth2AuthenticationUrls(); + + model.addAttribute("oauth_urls", oauth2AuthenticationUrls); + + model.addAttribute("skin_title", frontendPropertiesService.getFrontendProperty(FrontendPropertiesServiceImpl.FrontendProperty.skin_title)); + model.addAttribute("skin_authorization_message", frontendPropertiesService.getFrontendProperty(FrontendPropertiesServiceImpl.FrontendProperty.skin_authorization_message)); + model.addAttribute("skin_login_contact_html", frontendPropertiesService.getFrontendProperty(FrontendPropertiesServiceImpl.FrontendProperty.skin_login_contact_html)); + model.addAttribute("skin_login_saml_registration_html", frontendPropertiesService.getFrontendProperty(FrontendPropertiesServiceImpl.FrontendProperty.skin_login_saml_registration_html)); + model.addAttribute("saml_idp_metadata_entityid", frontendPropertiesService.getFrontendProperty(FrontendPropertiesServiceImpl.FrontendProperty.saml_idp_metadata_entityid)); + model.addAttribute("logout_success", request.getParameterMap().containsKey("logout_success")); + model.addAttribute("login_error", Boolean.parseBoolean(request.getParameter("login_error"))); + model.addAttribute("show_saml", frontendPropertiesService.getFrontendProperty(FrontendPropertiesServiceImpl.FrontendProperty.authenticationMethod).equals("saml")); + model.addAttribute("show_google", Arrays.asList(authenticate).contains("social_auth") || Arrays.asList(authenticate).contains("social_auth_google") ); + model.addAttribute("show_microsoft", Arrays.asList(authenticate).contains("social_auth_microsoft")); + + return "login"; + } + + private Map getOauth2AuthenticationUrls() { + Map oauth2AuthenticationUrls = new HashMap<>(); + if(!Objects.isNull(clientRegistrationRepository) && !Objects.equals(authenticate, "saml")) { + for (ClientRegistration clientRegistration : clientRegistrationRepository) { + oauth2AuthenticationUrls.put(clientRegistration.getRegistrationId(), + OAuth2AuthorizationRequestRedirectFilter.DEFAULT_AUTHORIZATION_REQUEST_BASE_URI + "/" + clientRegistration.getRegistrationId()); + } + } + return oauth2AuthenticationUrls; + } +} diff --git a/src/main/java/org/cbioportal/web/MatchMinerController.java b/src/main/java/org/cbioportal/web/MatchMinerController.java new file mode 100644 index 00000000000..3b1ad15f694 --- /dev/null +++ b/src/main/java/org/cbioportal/web/MatchMinerController.java @@ -0,0 +1,80 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import jakarta.servlet.http.HttpServletRequest; +import org.apache.commons.codec.binary.Base64; +import org.json.simple.JSONObject; +import org.json.simple.parser.JSONParser; +import org.json.simple.parser.ParseException; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.HttpEntity; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpMethod; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.http.converter.StringHttpMessageConverter; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RestController; +import org.springframework.web.client.RestTemplate; + +import java.net.URI; +import java.net.URISyntaxException; +import java.nio.charset.Charset; +import java.nio.charset.StandardCharsets; + +@RestController +@RequestMapping("/api/matchminer") +public class MatchMinerController { + + private static final Logger LOG = LoggerFactory.getLogger( MatchMinerController.class); + + @Value("${matchminer.url:}") + private String url; + + @Value("${matchminer.token:}") + private String token; + + @RequestMapping(value = "/api/**", produces = "application/json") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Object.class))) + public ResponseEntity proxy(@RequestBody(required = false) JSONObject body, HttpMethod method, HttpServletRequest request) { + try { + // TODO when reimplemeting different dispatcherservlets with different context roots + // reset this to 'String requestPathInfo = request.getPathInfo();' + String requestPathInfo = request.getPathInfo() == null? request.getServletPath() : request.getPathInfo(); + String path = requestPathInfo.replace("/matchminer", ""); + URI uri = new URI(this.url + path); + + HttpHeaders httpHeaders = new HttpHeaders(); + String contentType = request.getHeader("Content-Type"); + if (contentType != null) { + httpHeaders.setContentType(MediaType.valueOf(contentType)); + } + if (!this.token.equals("")) { + String auth = this.token + ":"; + byte[] encodedAuth = Base64.encodeBase64(auth.getBytes(Charset.forName("US-ASCII"))); + String authHeader = "Basic " + new String(encodedAuth); + httpHeaders.set("Authorization", authHeader); + } + + RestTemplate restTemplate = new RestTemplate(); + restTemplate.getMessageConverters().add(0, new StringHttpMessageConverter(StandardCharsets.UTF_8)); + ResponseEntity responseEntity = restTemplate.exchange(uri, method, new HttpEntity<>(body, httpHeaders), String.class); + // The response might be a json object or a json array, so I return Object to cover both cases. + Object response = new JSONParser().parse(responseEntity.getBody()); + return new ResponseEntity<>(response, responseEntity.getStatusCode()); + } catch (URISyntaxException e) { + LOG.error("Error occurred", e); + return new ResponseEntity<>(HttpStatus.BAD_REQUEST); + } catch (ParseException e) { + LOG.error("Error occurred", e); + return new ResponseEntity<>(HttpStatus.INTERNAL_SERVER_ERROR); + } + } +} \ No newline at end of file diff --git a/web/src/main/java/org/cbioportal/web/MolecularDataController.java b/src/main/java/org/cbioportal/web/MolecularDataController.java similarity index 77% rename from web/src/main/java/org/cbioportal/web/MolecularDataController.java rename to src/main/java/org/cbioportal/web/MolecularDataController.java index ac6576fc1c1..69ed27f83bf 100644 --- a/web/src/main/java/org/cbioportal/web/MolecularDataController.java +++ b/src/main/java/org/cbioportal/web/MolecularDataController.java @@ -1,13 +1,18 @@ package org.cbioportal.web; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; import org.apache.commons.lang3.math.NumberUtils; import org.cbioportal.model.GeneMolecularData; import org.cbioportal.model.NumericGeneMolecularData; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; import org.cbioportal.service.MolecularDataService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; import org.cbioportal.web.config.PublicApiTags; import org.cbioportal.web.config.annotation.PublicApi; import org.cbioportal.web.parameter.HeaderKeyConstants; @@ -29,16 +34,18 @@ import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RequestParam; import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; -import javax.validation.Valid; import java.math.BigDecimal; -import java.util.*; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.List; @PublicApi -@RestController +@RestController() +@RequestMapping("/api") @Validated -@Api(tags = PublicApiTags.MOLECULAR_DATA, description = " ") +@Tag(name = PublicApiTags.MOLECULAR_DATA, description = " ") public class MolecularDataController { @Autowired @@ -47,15 +54,17 @@ public class MolecularDataController { @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/molecular-data", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all molecular data in a molecular profile") + @Operation(description = "Get all molecular data in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = NumericGeneMolecularData.class)))) public ResponseEntity> getAllMolecularDataInMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_rna_seq_v2_mrna") + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_rna_seq_v2_mrna") @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "Sample List ID e.g. acc_tcga_all") + @Parameter(required = true, description = "Sample List ID e.g. acc_tcga_all") @RequestParam String sampleListId, - @ApiParam(required = true, value = "Entrez Gene ID e.g. 1") + @Parameter(required = true, description = "Entrez Gene ID e.g. 1") @RequestParam Integer entrezGeneId, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { List result = filterNonNumberMolecularData(molecularDataService.getMolecularData( @@ -74,13 +83,15 @@ public ResponseEntity> getAllMolecularDataInMolec @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/molecular-data/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch molecular data in a molecular profile") + @Operation(description = "Fetch molecular data in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = NumericGeneMolecularData.class)))) public ResponseEntity> fetchAllMolecularDataInMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_rna_seq_v2_mrna") + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_rna_seq_v2_mrna") @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "List of Sample IDs/Sample List ID and Entrez Gene IDs") + @Parameter(required = true, description = "List of Sample IDs/Sample List ID and Entrez Gene IDs") @Valid @RequestBody MolecularDataFilter molecularDataFilter, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { List result; @@ -104,16 +115,18 @@ public ResponseEntity> fetchAllMolecularDataInMol @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/molecular-data/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch molecular data") + @Operation(description = "Fetch molecular data") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = NumericGeneMolecularData.class)))) public ResponseEntity> fetchMolecularDataInMultipleMolecularProfiles( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. @Valid @RequestAttribute(required = false, value = "interceptedMolecularDataMultipleStudyFilter") MolecularDataMultipleStudyFilter interceptedMolecularDataMultipleStudyFilter, - @ApiParam(required = true, value = "List of Molecular Profile ID and Sample ID pairs or List of Molecular" + + @Parameter(required = true, description = "List of Molecular Profile ID and Sample ID pairs or List of Molecular" + "Profile IDs and Entrez Gene IDs") @Valid @RequestBody(required = false) MolecularDataMultipleStudyFilter molecularDataMultipleStudyFilter, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection) { List result; diff --git a/src/main/java/org/cbioportal/web/MolecularProfileController.java b/src/main/java/org/cbioportal/web/MolecularProfileController.java new file mode 100644 index 00000000000..ee887e13eff --- /dev/null +++ b/src/main/java/org/cbioportal/web/MolecularProfileController.java @@ -0,0 +1,175 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.MolecularProfile; +import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.service.MolecularProfileService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.MolecularProfileFilter; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.MolecularProfileSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.Collection; +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.MOLECULAR_PROFILES, description = " ") +public class MolecularProfileController { + + @Autowired + private MolecularProfileService molecularProfileService; + + @RequestMapping(value = "/molecular-profiles", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all molecular profiles") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = MolecularProfile.class)))) + public ResponseEntity> getAllMolecularProfiles( + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) MolecularProfileSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, molecularProfileService.getMetaMolecularProfiles() + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + molecularProfileService.getAllMolecularProfiles(projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/{molecularProfileId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = MolecularProfile.class))) + public ResponseEntity getMolecularProfile( + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_mutations") + @PathVariable String molecularProfileId) throws MolecularProfileNotFoundException { + + return new ResponseEntity<>(molecularProfileService.getMolecularProfile(molecularProfileId), HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/molecular-profiles", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all molecular profiles in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = MolecularProfile.class)))) + public ResponseEntity> getAllMolecularProfilesInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) MolecularProfileSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, molecularProfileService + .getMetaMolecularProfilesInStudy(studyId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + molecularProfileService.getAllMolecularProfilesInStudy(studyId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch molecular profiles") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = MolecularProfile.class)))) + public ResponseEntity> fetchMolecularProfiles( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileFilter") MolecularProfileFilter interceptedMolecularProfileFilter, + @Parameter(required = true, description = "List of Molecular Profile IDs or List of Study IDs") + @Valid @RequestBody(required = false) MolecularProfileFilter molecularProfileFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + BaseMeta baseMeta; + + if (interceptedMolecularProfileFilter.getStudyIds() != null) { + baseMeta = molecularProfileService.getMetaMolecularProfilesInStudies( + interceptedMolecularProfileFilter.getStudyIds()); + } else { + baseMeta = molecularProfileService.getMetaMolecularProfiles( + interceptedMolecularProfileFilter.getMolecularProfileIds()); + } + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, baseMeta.getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + List molecularProfiles; + if (interceptedMolecularProfileFilter.getStudyIds() != null) { + molecularProfiles = molecularProfileService.getMolecularProfilesInStudies( + interceptedMolecularProfileFilter.getStudyIds(), projection.name()); + } else { + molecularProfiles = molecularProfileService.getMolecularProfiles( + interceptedMolecularProfileFilter.getMolecularProfileIds(), projection.name()); + } + return new ResponseEntity<>(molecularProfiles, HttpStatus.OK); + } + } +} diff --git a/src/main/java/org/cbioportal/web/MrnaPercentileController.java b/src/main/java/org/cbioportal/web/MrnaPercentileController.java new file mode 100644 index 00000000000..816da438e08 --- /dev/null +++ b/src/main/java/org/cbioportal/web/MrnaPercentileController.java @@ -0,0 +1,61 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.MrnaPercentile; +import org.cbioportal.service.MrnaPercentileService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.PagingConstants; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "mRNA Percentile", description = " ") +public class MrnaPercentileController { + + @Autowired + private MrnaPercentileService mrnaPercentileService; + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/mrna-percentile/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get mRNA expression percentiles for list of genes for a sample") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = MrnaPercentile.class)))) + public ResponseEntity> fetchMrnaPercentile( + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_rna_seq_v2_mrna") + @PathVariable String molecularProfileId, + @Parameter(required = true, description = "Sample ID e.g. TCGA-OR-A5J2-01") + @RequestParam String sampleId, + @Parameter(required = true, description = "List of Entrez Gene IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody List entrezGeneIds) + throws MolecularProfileNotFoundException { + + return new ResponseEntity<>( + mrnaPercentileService.fetchMrnaPercentile(molecularProfileId, sampleId, entrezGeneIds), HttpStatus.OK); + } +} diff --git a/web/src/main/java/org/cbioportal/web/MskEntityTranslationController.java b/src/main/java/org/cbioportal/web/MskEntityTranslationController.java similarity index 96% rename from web/src/main/java/org/cbioportal/web/MskEntityTranslationController.java rename to src/main/java/org/cbioportal/web/MskEntityTranslationController.java index 0217438aa3a..d4a9063a514 100644 --- a/web/src/main/java/org/cbioportal/web/MskEntityTranslationController.java +++ b/src/main/java/org/cbioportal/web/MskEntityTranslationController.java @@ -32,22 +32,27 @@ package org.cbioportal.web; -import java.util.HashMap; -import java.util.regex.*; -import org.cbioportal.service.SampleService; import org.cbioportal.service.PatientService; +import org.cbioportal.service.SampleService; import org.cbioportal.service.exception.PatientNotFoundException; import org.cbioportal.service.exception.SampleNotFoundException; import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.utils.config.annotation.ConditionalOnProperty; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; +import org.springframework.context.annotation.PropertySource; +import org.springframework.context.annotation.PropertySources; import org.springframework.stereotype.Controller; import org.springframework.ui.ModelMap; -import org.springframework.web.bind.annotation.*; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.ResponseBody; import org.springframework.web.servlet.ModelAndView; -import org.springframework.context.annotation.PropertySource; -import org.springframework.context.annotation.PropertySources; -import org.cbioportal.utils.config.annotation.ConditionalOnProperty; + +import java.util.HashMap; +import java.util.regex.Matcher; +import java.util.regex.Pattern; /** * This class checks for the existence and location of entities {samples, patients} diff --git a/web/src/main/java/org/cbioportal/web/MutationController.java b/src/main/java/org/cbioportal/web/MutationController.java similarity index 77% rename from web/src/main/java/org/cbioportal/web/MutationController.java rename to src/main/java/org/cbioportal/web/MutationController.java index ccbc8b88809..fc9c0b91ba0 100644 --- a/web/src/main/java/org/cbioportal/web/MutationController.java +++ b/src/main/java/org/cbioportal/web/MutationController.java @@ -1,20 +1,25 @@ package org.cbioportal.web; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.meta.MutationMeta; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; import org.cbioportal.model.Mutation; -import org.cbioportal.model.MutationCountByPosition; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.model.meta.MutationMeta; import org.cbioportal.service.MutationService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; import org.cbioportal.web.config.PublicApiTags; import org.cbioportal.web.config.annotation.PublicApi; import org.cbioportal.web.parameter.Direction; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.MutationFilter; import org.cbioportal.web.parameter.MutationMultipleStudyFilter; -import org.cbioportal.web.parameter.MutationPositionIdentifier; import org.cbioportal.web.parameter.PagingConstants; import org.cbioportal.web.parameter.Projection; import org.cbioportal.web.parameter.SampleMolecularIdentifier; @@ -33,18 +38,17 @@ import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RequestParam; import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import javax.validation.Valid; -import java.util.*; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.List; @PublicApi -@RestController +@RestController() +@RequestMapping("/api") @Validated -@Api(tags = PublicApiTags.MUTATIONS, description = " ") +@Tag(name = PublicApiTags.MUTATIONS, description = " ") public class MutationController { @Autowired @@ -53,26 +57,28 @@ public class MutationController { @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/mutations", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get mutations in a molecular profile by Sample List ID") + @Operation(description = "Get mutations in a molecular profile by Sample List ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Mutation.class)))) public ResponseEntity> getMutationsInMolecularProfileBySampleListId( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_mutations") + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_mutations") @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "Sample List ID e.g. acc_tcga_all") + @Parameter(required = true, description = "Sample List ID e.g. acc_tcga_all") @RequestParam String sampleListId, - @ApiParam("Entrez Gene ID") + @Parameter(description = "Entrez Gene ID") @RequestParam(required = false) Integer entrezGeneId, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") + @Parameter(description = "Page size of the result list") @Max(PagingConstants.MAX_PAGE_SIZE) @Min(PagingConstants.MIN_PAGE_SIZE) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") + @Parameter(description = "Page number of the result list") @Min(PagingConstants.MIN_PAGE_NUMBER) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") + @Parameter(description = "Name of the property that the result list is sorted by") @RequestParam(required = false) MutationSortBy sortBy, - @ApiParam("Direction of the sort") + @Parameter(description = "Direction of the sort") @RequestParam(defaultValue = "ASC") Direction direction) throws MolecularProfileNotFoundException { if (projection == Projection.META) { @@ -93,24 +99,26 @@ public ResponseEntity> getMutationsInMolecularProfileBySampleList @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/mutations/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch mutations in a molecular profile") + @Operation(description = "Fetch mutations in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Mutation.class)))) public ResponseEntity> fetchMutationsInMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_mutations") + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_mutations") @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "List of Sample IDs/Sample List ID and Entrez Gene IDs") + @Parameter(required = true, description = "List of Sample IDs/Sample List ID and Entrez Gene IDs") @Valid @RequestBody MutationFilter mutationFilter, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") + @Parameter(description = "Page size of the result list") @Max(PagingConstants.MAX_PAGE_SIZE) @Min(PagingConstants.MIN_PAGE_SIZE) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") + @Parameter(description = "Page number of the result list") @Min(PagingConstants.MIN_PAGE_NUMBER) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") + @Parameter(description = "Name of the property that the result list is sorted by") @RequestParam(required = false) MutationSortBy sortBy, - @ApiParam("Direction of the sort") + @Parameter(description = "Direction of the sort") @RequestParam(defaultValue = "ASC") Direction direction) throws MolecularProfileNotFoundException { if (projection == Projection.META) { @@ -146,27 +154,29 @@ public ResponseEntity> fetchMutationsInMolecularProfile( @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/mutations/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch mutations in multiple molecular profiles by sample IDs") + @Operation(description = "Fetch mutations in multiple molecular profiles by sample IDs") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Mutation.class)))) public ResponseEntity> fetchMutationsInMultipleMolecularProfiles( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. @Valid @RequestAttribute(required = false, value = "interceptedMutationMultipleStudyFilter") MutationMultipleStudyFilter interceptedMutationMultipleStudyFilter, - @ApiParam(required = true, value = "List of Molecular Profile IDs or List of Molecular Profile ID / Sample ID pairs," + + @Parameter(required = true, description = "List of Molecular Profile IDs or List of Molecular Profile ID / Sample ID pairs," + " and List of Entrez Gene IDs") @Valid @RequestBody(required = false) MutationMultipleStudyFilter mutationMultipleStudyFilter, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") + @Parameter(description = "Page size of the result list") @Max(PagingConstants.MAX_PAGE_SIZE) @Min(PagingConstants.MIN_PAGE_SIZE) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") + @Parameter(description = "Page number of the result list") @Min(PagingConstants.MIN_PAGE_NUMBER) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") + @Parameter(description = "Name of the property that the result list is sorted by") @RequestParam(required = false) MutationSortBy sortBy, - @ApiParam("Direction of the sort") + @Parameter(description = "Direction of the sort") @RequestParam(defaultValue = "ASC") Direction direction) { if (projection == Projection.META) { diff --git a/src/main/java/org/cbioportal/web/MutationCountController.java b/src/main/java/org/cbioportal/web/MutationCountController.java new file mode 100644 index 00000000000..7450c7fe131 --- /dev/null +++ b/src/main/java/org/cbioportal/web/MutationCountController.java @@ -0,0 +1,65 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.MutationCountByPosition; +import org.cbioportal.service.MutationService; +import org.cbioportal.web.config.InternalApiTags; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.MutationPositionIdentifier; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.List; + +@InternalApi +@RestController +@Validated +@Tag(name = InternalApiTags.MUTATIONS_COUNT, description = " ") +public class MutationCountController { + + public static final int MUTATION_MAX_PAGE_SIZE = 10000000; + + @Autowired + private MutationService mutationService; + + @RequestMapping(value = "/api/mutation-counts-by-position/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch mutation counts in all studies by gene and position") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = MutationCountByPosition.class)))) + public ResponseEntity> fetchMutationCountsByPosition( + @Parameter(required = true, description = "List of Mutation Position Identifiers") + @Size(min = 1, max = MUTATION_MAX_PAGE_SIZE) + @RequestBody List mutationPositionIdentifiers) { + + List entrezGeneIds = new ArrayList<>(); + List proteinPosStarts = new ArrayList<>(); + List proteinPosEnds = new ArrayList<>(); + for (MutationPositionIdentifier mutationPositionIdentifier : mutationPositionIdentifiers) { + + entrezGeneIds.add(mutationPositionIdentifier.getEntrezGeneId()); + proteinPosStarts.add(mutationPositionIdentifier.getProteinPosStart()); + proteinPosEnds.add(mutationPositionIdentifier.getProteinPosEnd()); + } + + return new ResponseEntity<>(mutationService.fetchMutationCountsByPosition(entrezGeneIds, proteinPosStarts, + proteinPosEnds), HttpStatus.OK); + } + + +} diff --git a/src/main/java/org/cbioportal/web/MutationSpectrumController.java b/src/main/java/org/cbioportal/web/MutationSpectrumController.java new file mode 100644 index 00000000000..c6c8a28b718 --- /dev/null +++ b/src/main/java/org/cbioportal/web/MutationSpectrumController.java @@ -0,0 +1,64 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import org.cbioportal.model.MutationSpectrum; +import org.cbioportal.service.MutationSpectrumService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.MutationSpectrumFilter; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Mutation Spectrums", description = " ") +public class MutationSpectrumController { + + @Autowired + private MutationSpectrumService mutationSpectrumService; + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/mutation-spectrums/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch mutation spectrums in a molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = MutationSpectrum.class)))) + public ResponseEntity> fetchMutationSpectrums( + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_mutations") + @PathVariable String molecularProfileId, + @Parameter(required = true, description = "List of Sample IDs/Sample List ID") + @Valid @RequestBody MutationSpectrumFilter mutationSpectrumFilter) throws MolecularProfileNotFoundException { + + List mutationSpectrums; + if (mutationSpectrumFilter.getSampleListId() != null) { + mutationSpectrums = mutationSpectrumService.getMutationSpectrums(molecularProfileId, + mutationSpectrumFilter.getSampleListId()); + } else { + mutationSpectrums = mutationSpectrumService.fetchMutationSpectrums(molecularProfileId, + mutationSpectrumFilter.getSampleIds()); + } + + return new ResponseEntity<>(mutationSpectrums, HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/OAuth2DataAccessTokenController.java b/src/main/java/org/cbioportal/web/OAuth2DataAccessTokenController.java new file mode 100644 index 00000000000..94df3e2f7da --- /dev/null +++ b/src/main/java/org/cbioportal/web/OAuth2DataAccessTokenController.java @@ -0,0 +1,195 @@ +/* + * Copyright (c) 2020 The Hyve B.V. + * + * This library is distributed in the hope that it will be useful, but WITHOUT + * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS + * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder + * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no + * obligations to provide maintenance, support, updates, enhancements or + * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be + * liable to any party for direct, indirect, special, incidental or + * consequential damages, including lost profits, arising out of the use of this + * software and its documentation, even if Memorial Sloan-Kettering Cancer + * Center has been advised of the possibility of such damage. + */ + +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . +*/ + +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.annotation.PostConstruct; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.apache.commons.lang3.StringUtils; +import org.cbioportal.model.DataAccessToken; +import org.cbioportal.service.DataAccessTokenService; +import org.cbioportal.service.exception.DataAccessTokenNoUserIdentityException; +import org.cbioportal.service.exception.DataAccessTokenProhibitedUserException; +import org.cbioportal.utils.config.annotation.ConditionalOnProperty; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.core.Authentication; +import org.springframework.security.core.authority.SimpleGrantedAuthority; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; +import org.springframework.web.client.HttpClientErrorException; + +import java.io.IOException; +import java.io.UnsupportedEncodingException; +import java.net.URLEncoder; +import java.nio.charset.StandardCharsets; +import java.util.List; + +@InternalApi +@Validated +@Tag(name = "Data Access Tokens", description = " ") +@RestController +@ConditionalOnProperty(name = "dat.method", havingValue = "oauth2") +public class OAuth2DataAccessTokenController { + + @Value("${dat.oauth2.userAuthorizationUri}") + private String userAuthorizationUri; + + @Value("${dat.oauth2.redirectUri}") + private String redirectUri; + + @Value("${dat.oauth2.clientId}") + private String clientId; + + @Value("${dat.filter_user_role:}") // default is empty string + private String userRoleToAccessToken; + + @Autowired + private DataAccessTokenService tokenService; + private String authorizationUrl; + private String fileName = "cbioportal_data_access_token.txt"; + + @PostConstruct + public void postConstruct() throws UnsupportedEncodingException { + + String scopeEncoded = URLEncoder.encode("openid offline_access", StandardCharsets.UTF_8.toString()); + String clientIdEncoded = URLEncoder.encode(clientId, StandardCharsets.UTF_8.toString()); + String redirUriEncode = URLEncoder.encode(redirectUri, StandardCharsets.UTF_8.toString()); + + authorizationUrl = String.format("%s?response_type=%s&scope=%s&client_id=%s&redirect_uri=%s", userAuthorizationUri, "code", scopeEncoded, clientIdEncoded, redirUriEncode); + } + + // This is the entrypoint for the cBioPortal frontend to download a single user token. + // Redirect the browser to the authorizationUrl. + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-token") + @Operation(description = "Create a new data access token") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity downloadDataAccessToken(Authentication authentication, + HttpServletRequest request, HttpServletResponse response) throws IOException { + + isUserAuthorizedToAccess(authentication); + + // redirect to authentication endpoint + HttpHeaders headers = new HttpHeaders(); + headers.add("Location", authorizationUrl); + return new ResponseEntity<>(headers, HttpStatus.FOUND); + + } + + // retrieve and trigger download OAuth2 offline token + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-token/oauth2") + @Parameter(hidden = true) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = String.class))) + public ResponseEntity downloadOAuth2DataAccessToken(HttpServletRequest request, HttpServletResponse response) throws IOException { + + String accessCode = request.getParameter("code"); + DataAccessToken offlineToken = tokenService.createDataAccessToken(accessCode); + + if (offlineToken == null) { + throw new DataAccessTokenProhibitedUserException(); + } + + // add header to trigger download of the token by the browser + response.setHeader("Content-Disposition", "attachment; filename=" + fileName); + + return new ResponseEntity<>(offlineToken.toString(), HttpStatus.OK); + } + + @RequestMapping(method = RequestMethod.POST, value = "/api/data-access-tokens", produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all data access tokens") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = DataAccessToken.class))) + public ResponseEntity createDataAccessToken(Authentication authentication) throws HttpClientErrorException { + throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); + } + + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-tokens") + @Operation(description = "Retrieve all data access tokens") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = DataAccessToken.class)))) + public ResponseEntity> getAllDataAccessTokens(HttpServletRequest request, + Authentication authentication) { + throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); + } + + @RequestMapping(method = RequestMethod.GET, value = "/api/data-access-tokens/{token}") + @Operation(description = "Retrieve an existing data access token") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = DataAccessToken.class))) + public ResponseEntity getDataAccessToken( + @Parameter(required = true, description = "token") @PathVariable String token) { + throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); + + } + + @RequestMapping(method = RequestMethod.DELETE, value = "/api/data-access-tokens") + @Operation(description = "Delete all data access tokens") + public void revokeAllDataAccessTokens(Authentication authentication) { + throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); + } + + @RequestMapping(method = RequestMethod.DELETE, value = "/api/data-access-tokens/{token}") + @Operation(description = "Delete a data access token") + public void revokeDataAccessToken(@Parameter(required = true, description = "token") @PathVariable String token) { + throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); + } + + private void isUserAuthorizedToAccess(Authentication authentication) { + if (authentication == null || !authentication.isAuthenticated()) { + throw new DataAccessTokenNoUserIdentityException(); + } + + if(StringUtils.isNotEmpty(userRoleToAccessToken) && + !authentication.getAuthorities().contains(new SimpleGrantedAuthority(userRoleToAccessToken))) { + throw new DataAccessTokenProhibitedUserException(); + } + } + +} diff --git a/src/main/java/org/cbioportal/web/PatientController.java b/src/main/java/org/cbioportal/web/PatientController.java new file mode 100644 index 00000000000..e1f4d37ca55 --- /dev/null +++ b/src/main/java/org/cbioportal/web/PatientController.java @@ -0,0 +1,190 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.Patient; +import org.cbioportal.service.PatientService; +import org.cbioportal.service.exception.PatientNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.PatientFilter; +import org.cbioportal.web.parameter.PatientIdentifier; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.PatientSortBy; +import org.cbioportal.web.util.UniqueKeyExtractor; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.PATIENTS, description = " ") +public class PatientController { + + @Autowired + private PatientService patientService; + + @Autowired + private UniqueKeyExtractor uniqueKeyExtractor; + + @RequestMapping(value = "/patients", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all patients") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Patient.class)))) + public ResponseEntity> getAllPatients( + @Parameter(description = "Search keyword that applies to ID of the patients") + @RequestParam(required = false) String keyword, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) PatientSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, patientService.getMetaPatients(keyword) + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + patientService.getAllPatients(keyword, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/patients", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all patients in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Patient.class)))) + public ResponseEntity> getAllPatientsInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) PatientSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, patientService.getMetaPatientsInStudy(studyId) + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + patientService.getAllPatientsInStudy(studyId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/patients/{patientId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get a patient in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Patient.class))) + public ResponseEntity getPatientInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Patient ID e.g. TCGA-OR-A5J2") + @PathVariable String patientId) throws PatientNotFoundException, StudyNotFoundException { + + return new ResponseEntity<>(patientService.getPatientInStudy(studyId, patientId), HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/patients/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Patient.class)))) + public ResponseEntity> fetchPatients( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedPatientFilter") PatientFilter interceptedPatientFilter, + @Parameter(required = true, description = "List of patient identifiers") + @Valid @RequestBody(required = false) PatientFilter patientFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + List studyIds = new ArrayList<>(); + List patientIds = new ArrayList<>(); + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + if (interceptedPatientFilter.getPatientIdentifiers() != null) { + extractStudyAndPatientIds(interceptedPatientFilter, studyIds, patientIds); + } else { + uniqueKeyExtractor.extractUniqueKeys(interceptedPatientFilter.getUniquePatientKeys(), studyIds, patientIds); + } + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, patientService.fetchMetaPatients(studyIds, patientIds) + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + if (interceptedPatientFilter.getPatientIdentifiers() != null) { + extractStudyAndPatientIds(interceptedPatientFilter, studyIds, patientIds); + } else { + uniqueKeyExtractor.extractUniqueKeys(interceptedPatientFilter.getUniquePatientKeys(), studyIds, patientIds); + } + //TODO: since we are already extracting the studyIds in the interceptor, we might not need to use the service here + return new ResponseEntity<>( + patientService.fetchPatients(studyIds, patientIds, projection.name()), HttpStatus.OK); + } + } + + private void extractStudyAndPatientIds(PatientFilter patientFilter, List studyIds, List patientIds) { + + for (PatientIdentifier patientIdentifier : patientFilter.getPatientIdentifiers()) { + studyIds.add(patientIdentifier.getStudyId()); + patientIds.add(patientIdentifier.getPatientId()); + } + } +} diff --git a/src/main/java/org/cbioportal/web/ReferenceGenomeGeneController.java b/src/main/java/org/cbioportal/web/ReferenceGenomeGeneController.java new file mode 100644 index 00000000000..5273ba1a165 --- /dev/null +++ b/src/main/java/org/cbioportal/web/ReferenceGenomeGeneController.java @@ -0,0 +1,111 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.ReferenceGenomeGene; +import org.cbioportal.service.GeneMemoizerService; +import org.cbioportal.service.ReferenceGenomeGeneService; +import org.cbioportal.service.exception.GeneNotFoundException; +import org.cbioportal.web.config.InternalApiTags; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; +import java.util.stream.Collectors; + +@InternalApi +@RestController +@Validated +@Tag(name = InternalApiTags.REFERENCE_GENOME_GENES, description = " ") +public class ReferenceGenomeGeneController { + private static final int GENE_MAX_PAGE_SIZE = 100000; + private static final String GENE_DEFAULT_PAGE_SIZE = "100000"; + + @Autowired + private ReferenceGenomeGeneService referenceGenomeGeneService; + + @Autowired + private GeneMemoizerService geneMemoizerService; + + /** + * The memoization logic in this method is a temporary fix to make this work until + * Ehcache is working correctly on cbioportal.org. + * This endpoint creates a large response and seems to bloat the webserver's heap + * size, leading to poor performance and crashes. The caching seems to improve + * processor load, heap size and response time. + */ + @RequestMapping(value = "/api/reference-genome-genes/{genomeName}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all reference genes") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ReferenceGenomeGene.class)))) + public ResponseEntity> getAllReferenceGenomeGenes( + @Parameter(required = true, description = "Name of Reference Genome hg19") + @PathVariable String genomeName) { + + List genes = geneMemoizerService.fetchGenes(genomeName); + if (genes == null) { + genes = referenceGenomeGeneService.fetchAllReferenceGenomeGenes(genomeName); + geneMemoizerService.cacheGenes(genes, genomeName); + } + return new ResponseEntity<>(genes, HttpStatus.OK); + } + + @RequestMapping(value = "/api/reference-genome-genes/{genomeName}/{geneId}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get a gene of a reference genome of interest") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = ReferenceGenomeGene.class))) + public ResponseEntity getReferenceGenomeGene( + @Parameter(required = true, description = "Name of Reference Genome hg19") + @PathVariable String genomeName, + @Parameter(required = true, description = "Entrez Gene ID 207") + @PathVariable Integer geneId) throws GeneNotFoundException { + + return new ResponseEntity<>(referenceGenomeGeneService.getReferenceGenomeGene(geneId, genomeName), HttpStatus.OK); + } + + @RequestMapping(value = "/api/reference-genome-genes/{genomeName}/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch genes of reference genome of interest") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ReferenceGenomeGene.class)))) + public ResponseEntity> fetchReferenceGenomeGenes( + @Parameter(required = true, description = "Name of Reference Genome hg19") + @PathVariable String genomeName, + @Parameter(required = true, description = "List of Gene IDs") + @Size(min = 1, max = GENE_MAX_PAGE_SIZE) + @RequestBody List geneIds) { + + if (isInteger(geneIds.get(0))) { + List newIds = geneIds.stream().map(s -> Integer.parseInt(s)).collect(Collectors.toList()); + return new ResponseEntity<>(referenceGenomeGeneService.fetchGenesByGenomeName(newIds, genomeName), HttpStatus.OK); + } else { + return new ResponseEntity<>(referenceGenomeGeneService.fetchGenesByHugoGeneSymbolsAndGenomeName( + geneIds, genomeName), HttpStatus.OK); + } + } + + private boolean isInteger(String s) { + try { + Integer.parseInt(s); + } catch(NumberFormatException | NullPointerException e) { + return false; + } + return true; + } +} + diff --git a/src/main/java/org/cbioportal/web/ResourceDataController.java b/src/main/java/org/cbioportal/web/ResourceDataController.java new file mode 100644 index 00000000000..4b5e1e43502 --- /dev/null +++ b/src/main/java/org/cbioportal/web/ResourceDataController.java @@ -0,0 +1,160 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.ResourceData; +import org.cbioportal.service.ResourceDataService; +import org.cbioportal.service.exception.PatientNotFoundException; +import org.cbioportal.service.exception.SampleNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.InternalApiTags; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.ResourceDataSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = InternalApiTags.RESOURCE_DATA, description = " ") +public class ResourceDataController { + + public static final int RESOURCE_DATA_MAX_PAGE_SIZE = 10000000; + private static final String RESOURCE_DATA_DEFAULT_PAGE_SIZE = "10000000"; + + @Autowired + private ResourceDataService resourceDataService; + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}/resource-data", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all resource data of a sample in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ResourceData.class)))) + public ResponseEntity> getAllResourceDataOfSampleInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Sample ID e.g. TCGA-OR-A5J2-01") + @PathVariable String sampleId, + @Parameter(description = "Resource ID") + @RequestParam(required = false) String resourceId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(RESOURCE_DATA_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = RESOURCE_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ResourceDataSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws SampleNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + throw new UnsupportedOperationException("Requested API is not implemented yet"); + } else { + return new ResponseEntity<>( + resourceDataService.getAllResourceDataOfSampleInStudy( + studyId, sampleId, resourceId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/resource-data", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all resource data of a patient in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ResourceData.class)))) + public ResponseEntity> getAllResourceDataOfPatientInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Patient ID e.g. TCGA-OR-A5J2") + @PathVariable String patientId, + @Parameter(description = "Resource ID") + @RequestParam(required = false) String resourceId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(RESOURCE_DATA_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = RESOURCE_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ResourceDataSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + throw new UnsupportedOperationException("Requested API is not implemented yet"); + } else { + return new ResponseEntity<>( + resourceDataService.getAllResourceDataOfPatientInStudy( + studyId, patientId, resourceId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/resource-data", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all resource data for a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ResourceData.class)))) + public ResponseEntity> getAllStudyResourceDataInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Resource ID") + @RequestParam(required = false) String resourceId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(RESOURCE_DATA_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = RESOURCE_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ResourceDataSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + throw new UnsupportedOperationException("Requested API is not implemented yet"); + } else { + return new ResponseEntity<>( + resourceDataService.getAllResourceDataForStudy(studyId, resourceId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + +} diff --git a/src/main/java/org/cbioportal/web/ResourceDefinitionController.java b/src/main/java/org/cbioportal/web/ResourceDefinitionController.java new file mode 100644 index 00000000000..4f4658166c8 --- /dev/null +++ b/src/main/java/org/cbioportal/web/ResourceDefinitionController.java @@ -0,0 +1,114 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.ResourceDefinition; +import org.cbioportal.service.ResourceDefinitionService; +import org.cbioportal.service.exception.ResourceDefinitionNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.InternalApiTags; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.ResourceDefinitionSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = InternalApiTags.RESOURCE_DEFINITIONS, description = " ") +public class ResourceDefinitionController { + + @Autowired + private ResourceDefinitionService resourceDefinitionService; + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/resource-definitions", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all resource definitions in the specified study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ResourceDefinition.class)))) + public ResponseEntity> getAllResourceDefinitionsInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) ResourceDefinitionSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + throw new UnsupportedOperationException("Requested API is not implemented yet"); + } else { + return new ResponseEntity<>( + resourceDefinitionService.getAllResourceDefinitionsInStudy(studyId, projection.name(), pageSize, + pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), + HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/resource-definitions/{resourceId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get specified resource definition") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = ResourceDefinition.class))) + public ResponseEntity getResourceDefinitionInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description= "Resource ID") + @PathVariable String resourceId) + throws StudyNotFoundException, ResourceDefinitionNotFoundException { + + return new ResponseEntity<>(resourceDefinitionService.getResourceDefinition(studyId, resourceId), + HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/resource-definitions/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all resource definitions for specified studies") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ResourceDefinition.class)))) + public ResponseEntity> fetchResourceDefinitions( + @Parameter(required = true, description = "List of Study IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody List studyIds, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws StudyNotFoundException { + + return new ResponseEntity<>(resourceDefinitionService.fetchResourceDefinitions(studyIds, projection.name()), + HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/SampleController.java b/src/main/java/org/cbioportal/web/SampleController.java new file mode 100644 index 00000000000..74fc6ad34b7 --- /dev/null +++ b/src/main/java/org/cbioportal/web/SampleController.java @@ -0,0 +1,315 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.CancerStudy; +import org.cbioportal.model.Sample; +import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.service.SampleListService; +import org.cbioportal.service.SampleService; +import org.cbioportal.service.StudyService; +import org.cbioportal.service.exception.PatientNotFoundException; +import org.cbioportal.service.exception.SampleListNotFoundException; +import org.cbioportal.service.exception.SampleNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.utils.security.AccessLevel; +import org.cbioportal.utils.security.PortalSecurityConfig; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.SampleFilter; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.cbioportal.web.parameter.sort.SampleSortBy; +import org.cbioportal.web.util.UniqueKeyExtractor; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.List; +import java.util.stream.Collectors; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.SAMPLES, description = " ") +public class SampleController { + + public static final int SAMPLE_MAX_PAGE_SIZE = 10000000; + private static final String SAMPLE_DEFAULT_PAGE_SIZE = "10000000"; + + @Value("${authenticate}") + private String authenticate; + + @Autowired + private SampleService sampleService; + + @Autowired + private SampleListService sampleListService; + + @Autowired + private StudyService studyService; + + @Autowired + private UniqueKeyExtractor uniqueKeyExtractor; + + private boolean usingAuth() { + return !authenticate.isEmpty() + && !authenticate.equals("false") + && !authenticate.contains("optional_oauth2"); + } + + @RequestMapping(value = "/samples", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all samples matching keyword") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Sample.class)))) + public ResponseEntity> getSamplesByKeyword( + @Parameter(description = "Search keyword that applies to the study ID") + @RequestParam(required = false) String keyword, + + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) SampleSortBy sortBy, + + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction + ) { + String sort = sortBy == null ? null : sortBy.getOriginalValue(); + List studyIds = null; + if (PortalSecurityConfig.userAuthorizationEnabled(authenticate)) { + /* + If using auth, filter the list of samples returned using the list of study ids the + user has access to. If the user has access to no studies, the endpoint should not 403, + but instead return an empty list. + */ + studyIds = studyService + .getAllStudies( + null, + Projection.SUMMARY.name(), // force to summary so that post filter doesn't NPE + PagingConstants.MAX_PAGE_SIZE, + 0, + null, + direction.name(), + null, + AccessLevel.READ + ) + .stream() + .map(CancerStudy::getCancerStudyIdentifier) + .collect(Collectors.toList()); + } + + if (projection == Projection.META) { + HttpHeaders httpHeaders = new HttpHeaders(); + httpHeaders.add( + HeaderKeyConstants.TOTAL_COUNT, + sampleService.getMetaSamples(keyword, studyIds).getTotalCount().toString()); + return new ResponseEntity<>(httpHeaders, HttpStatus.OK); + } + return new ResponseEntity<>( + sampleService.getAllSamples(keyword, studyIds, projection.name(), pageSize, pageNumber, sort, direction.name()), + HttpStatus.OK + ); + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/samples", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all samples in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Sample.class)))) + public ResponseEntity> getAllSamplesInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(SAMPLE_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = SAMPLE_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) SampleSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, sampleService.getMetaSamplesInStudy(studyId) + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + sampleService.getAllSamplesInStudy(studyId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get a sample in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Sample.class))) + public ResponseEntity getSampleInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Sample ID e.g. TCGA-OR-A5J2-01") + @PathVariable String sampleId) throws SampleNotFoundException, StudyNotFoundException { + + return new ResponseEntity<>(sampleService.getSampleInStudy(studyId, sampleId), HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/samples", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all samples of a patient in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Sample.class)))) + public ResponseEntity> getAllSamplesOfPatientInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(required = true, description = "Patient ID e.g. TCGA-OR-A5J2") + @PathVariable String patientId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(SAMPLE_MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = SAMPLE_DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) SampleSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, + StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, + sampleService.getMetaSamplesOfPatientInStudy(studyId, patientId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + sampleService.getAllSamplesOfPatientInStudy(studyId, patientId, projection.name(), pageSize, + pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/samples/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch samples by ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Sample.class)))) + public ResponseEntity> fetchSamples( + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedSampleFilter") SampleFilter interceptedSampleFilter, + @Parameter(required = true, description = "List of sample identifiers") + @Valid @RequestBody(required = false) SampleFilter sampleFilter, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) throws SampleListNotFoundException { + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + BaseMeta baseMeta; + + if (interceptedSampleFilter.getSampleListIds() != null) { + baseMeta = sampleService.fetchMetaSamples(interceptedSampleFilter.getSampleListIds()); + } else { + if (interceptedSampleFilter.getSampleIdentifiers() != null) { + extractStudyAndSampleIds(interceptedSampleFilter, studyIds, sampleIds); + } else { + uniqueKeyExtractor.extractUniqueKeys(interceptedSampleFilter.getUniqueSampleKeys(), studyIds, sampleIds); + } + baseMeta = sampleService.fetchMetaSamples(studyIds, sampleIds); + } + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, baseMeta.getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + List samples; + if (interceptedSampleFilter.getSampleListIds() != null) { + List sampleListIds = interceptedSampleFilter.getSampleListIds(); + + samples = new ArrayList(); + + for (String sampleListId : sampleListIds) { + // check that all sample lists exist (this method throws an exception if one does not) + sampleListService.getSampleList(sampleListId); + } + + for (String sampleListId : sampleListIds) { + // fetch by sampleId so that we get cache at level of id instead list of ids + samples.addAll( + sampleService.fetchSamples(Arrays.asList(sampleListId), projection.name()) + ); + } + + //samples = sampleService.fetchSamples(sampleListIds, projection.name()); + + } else { + if (interceptedSampleFilter.getSampleIdentifiers() != null) { + extractStudyAndSampleIds(interceptedSampleFilter, studyIds, sampleIds); + } else { + uniqueKeyExtractor.extractUniqueKeys(interceptedSampleFilter.getUniqueSampleKeys(), studyIds, sampleIds); + } + samples = sampleService.fetchSamples(studyIds, sampleIds, projection.name()); + } + + return new ResponseEntity<>(samples, HttpStatus.OK); + } + } + + private void extractStudyAndSampleIds(SampleFilter sampleFilter, List studyIds, List sampleIds) { + + for (SampleIdentifier sampleIdentifier : sampleFilter.getSampleIdentifiers()) { + studyIds.add(sampleIdentifier.getStudyId()); + sampleIds.add(sampleIdentifier.getSampleId()); + } + } +} diff --git a/src/main/java/org/cbioportal/web/SampleListController.java b/src/main/java/org/cbioportal/web/SampleListController.java new file mode 100644 index 00000000000..ce1e82eff1c --- /dev/null +++ b/src/main/java/org/cbioportal/web/SampleListController.java @@ -0,0 +1,158 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.SampleList; +import org.cbioportal.service.SampleListService; +import org.cbioportal.service.exception.SampleListNotFoundException; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.PublicApiTags; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.SampleListSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = PublicApiTags.SAMPLE_LISTS, description = " ") +public class SampleListController { + + @Autowired + private SampleListService sampleListService; + + @RequestMapping(value = "/sample-lists", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all sample lists") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = SampleList.class)))) + public ResponseEntity> getAllSampleLists( + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) SampleListSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, sampleListService.getMetaSampleLists() + .getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + sampleListService.getAllSampleLists(projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#sampleListId, 'SampleListId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/sample-lists/{sampleListId}", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get sample list") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = SampleList.class))) + public ResponseEntity getSampleList( + @Parameter(required = true, description = "Sample List ID e.g. acc_tcga_all") + @PathVariable String sampleListId) throws SampleListNotFoundException { + + return new ResponseEntity<>(sampleListService.getSampleList(sampleListId), HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/sample-lists", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all sample lists in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = SampleList.class)))) + public ResponseEntity> getAllSampleListsInStudy( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) SampleListSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, sampleListService + .getMetaSampleListsInStudy(studyId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + sampleListService.getAllSampleListsInStudy(studyId, projection.name(), pageSize, pageNumber, + sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } + + @PreAuthorize("hasPermission(#sampleListId, 'SampleListId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/sample-lists/{sampleListId}/sample-ids", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all sample IDs in a sample list") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = String.class)))) + public ResponseEntity> getAllSampleIdsInSampleList( + @Parameter(required = true, description = "Sample List ID e.g. acc_tcga_all") + @PathVariable String sampleListId) throws SampleListNotFoundException { + + return new ResponseEntity<>(sampleListService.getAllSampleIdsInSampleList(sampleListId), HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#sampleListIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/sample-lists/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch sample lists by ID") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = SampleList.class)))) + public ResponseEntity> fetchSampleLists( + @Parameter(required = true, description = "List of sample list IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody List sampleListIds, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection) { + + return new ResponseEntity<>(sampleListService.fetchSampleLists(sampleListIds, projection.name()), HttpStatus.OK); + } +} diff --git a/src/main/java/org/cbioportal/web/ServerStatusController.java b/src/main/java/org/cbioportal/web/ServerStatusController.java new file mode 100644 index 00000000000..4aa7963a63b --- /dev/null +++ b/src/main/java/org/cbioportal/web/ServerStatusController.java @@ -0,0 +1,38 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import org.cbioportal.service.ServerStatusService; +import org.cbioportal.service.impl.ServerStatusServiceImpl.ServerStatusMessage; +import org.cbioportal.web.config.annotation.PublicApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + + +@PublicApi +@RestController +@Validated +@Tag(name = "Server running status", description = "This end point does not require authentication") +public class ServerStatusController { + + @Autowired + private ServerStatusService serverStatusService; + + @RequestMapping(value = "/api/health", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get the running status of the server") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = ServerStatusMessage.class))) + public ResponseEntity getServerStatus() { + return new ResponseEntity<>(serverStatusService.getServerStatus(), HttpStatus.OK); + } + +} diff --git a/web/src/main/java/org/cbioportal/web/SessionServiceController.java b/src/main/java/org/cbioportal/web/SessionServiceController.java similarity index 81% rename from web/src/main/java/org/cbioportal/web/SessionServiceController.java rename to src/main/java/org/cbioportal/web/SessionServiceController.java index 576f44a9c6d..689dc971afe 100644 --- a/web/src/main/java/org/cbioportal/web/SessionServiceController.java +++ b/src/main/java/org/cbioportal/web/SessionServiceController.java @@ -1,32 +1,48 @@ package org.cbioportal.web; -import java.io.IOException; -import java.util.*; -import java.util.regex.Pattern; - -import javax.servlet.http.HttpServletResponse; -import javax.validation.constraints.Size; - +import com.fasterxml.jackson.annotation.JsonInclude.Include; +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.DeserializationFeature; +import com.fasterxml.jackson.databind.ObjectMapper; import com.google.common.collect.ImmutableMap; +import com.mongodb.BasicDBObject; +import com.mongodb.QueryOperators; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import jakarta.servlet.http.HttpServletResponse; +import jakarta.validation.constraints.Size; import org.cbioportal.service.util.CustomAttributeWithData; import org.cbioportal.service.util.CustomDataSession; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.cbioportal.web.parameter.*; import org.cbioportal.service.util.SessionServiceRequestHandler; -import org.cbioportal.session_service.domain.Session; -import org.cbioportal.session_service.domain.SessionType; +import org.cbioportal.utils.removeme.Session; +import org.cbioportal.web.parameter.CustomGeneList; +import org.cbioportal.web.parameter.CustomGeneListData; +import org.cbioportal.web.parameter.PageSettings; +import org.cbioportal.web.parameter.PageSettingsData; +import org.cbioportal.web.parameter.PageSettingsIdentifier; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.ResultsPageSettings; +import org.cbioportal.web.parameter.SessionPage; +import org.cbioportal.web.parameter.StudyPageSettings; +import org.cbioportal.web.parameter.VirtualStudy; +import org.cbioportal.web.parameter.VirtualStudyData; import org.json.simple.JSONObject; import org.json.simple.parser.JSONParser; import org.json.simple.parser.ParseException; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Value; import org.springframework.core.ParameterizedTypeReference; -import org.springframework.http.*; +import org.springframework.http.HttpEntity; +import org.springframework.http.HttpMethod; +import org.springframework.http.HttpStatus; +import org.springframework.http.ResponseEntity; import org.springframework.security.authentication.AnonymousAuthenticationToken; import org.springframework.security.core.Authentication; import org.springframework.security.core.context.SecurityContextHolder; -import org.springframework.security.core.userdetails.UserDetails; import org.springframework.stereotype.Controller; import org.springframework.web.bind.annotation.PathVariable; import org.springframework.web.bind.annotation.RequestBody; @@ -34,15 +50,17 @@ import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.client.RestTemplate; -import com.fasterxml.jackson.annotation.JsonInclude.Include; -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.DeserializationFeature; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.mongodb.BasicDBObject; -import com.mongodb.QueryOperators; +import java.io.IOException; +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; +import java.util.Map; +import java.util.Optional; +import java.util.Set; +import java.util.regex.Pattern; @Controller -@RequestMapping("/session") +@RequestMapping("/api/session") public class SessionServiceController { private static final Logger LOG = LoggerFactory.getLogger(SessionServiceController.class); @@ -62,18 +80,15 @@ public class SessionServiceController { ); private boolean isAuthorized() { - Authentication authentication = SecurityContextHolder.getContext().getAuthentication(); return !(authentication == null || (authentication instanceof AnonymousAuthenticationToken)); } private String userName() { - - return ((UserDetails) SecurityContextHolder.getContext().getAuthentication().getPrincipal()).getUsername(); + return SecurityContextHolder.getContext().getAuthentication().getName(); } private boolean sameOrigin(Set set1, Set set2) { - if (set1 == null || set2 == null) { return false; } @@ -90,7 +105,7 @@ private PageSettings getRecentlyUpdatePageSettings(String query) { HttpEntity httpEntity = new HttpEntity(query, sessionServiceRequestHandler.getHttpHeaders()); ResponseEntity> responseEntity = restTemplate.exchange( - sessionServiceURL + SessionType.settings + "/query/fetch", + sessionServiceURL + Session.SessionType.settings + "/query/fetch", HttpMethod.POST, httpEntity, new ParameterizedTypeReference>() {}); @@ -105,27 +120,27 @@ private PageSettings getRecentlyUpdatePageSettings(String query) { } private ResponseEntity addSession( - SessionType type, + Session.SessionType type, Optional operation, JSONObject body ) { try { HttpEntity httpEntity; - if (type.equals(SessionType.virtual_study) || type.equals(SessionType.group)) { + if (type.equals(Session.SessionType.virtual_study) || type.equals(Session.SessionType.group)) { // JSON from file to Object VirtualStudyData virtualStudyData = sessionServiceObjectMapper.readValue(body.toString(), VirtualStudyData.class); if (isAuthorized()) { virtualStudyData.setOwner(userName()); if ((operation.isPresent() && operation.get().equals(SessionOperation.save)) - || type.equals(SessionType.group)) { + || type.equals(Session.SessionType.group)) { virtualStudyData.setUsers(Collections.singleton(userName())); } } // use basic authentication for session service if set httpEntity = new HttpEntity<>(virtualStudyData, sessionServiceRequestHandler.getHttpHeaders()); - } else if (type.equals(SessionType.settings)) { + } else if (type.equals(Session.SessionType.settings)) { if (!(isAuthorized())) { return new ResponseEntity<>(HttpStatus.SERVICE_UNAVAILABLE); } @@ -139,7 +154,7 @@ private ResponseEntity addSession( pageSettings.setOwner(userName()); httpEntity = new HttpEntity<>(pageSettings, sessionServiceRequestHandler.getHttpHeaders()); - } else if(type.equals(SessionType.custom_data)) { + } else if(type.equals(Session.SessionType.custom_data)) { // JSON from file to Object CustomAttributeWithData customData = sessionServiceObjectMapper.readValue(body.toString(), CustomAttributeWithData.class); @@ -150,7 +165,7 @@ private ResponseEntity addSession( // use basic authentication for session service if set httpEntity = new HttpEntity<>(customData, sessionServiceRequestHandler.getHttpHeaders()); - } else if (type.equals(SessionType.custom_gene_list)) { + } else if (type.equals(Session.SessionType.custom_gene_list)) { if (!(isAuthorized())) { return new ResponseEntity<>(HttpStatus.SERVICE_UNAVAILABLE); } @@ -177,7 +192,9 @@ private ResponseEntity addSession( } @RequestMapping(value = "/{type}/{id}", method = RequestMethod.GET) - public ResponseEntity getSession(@PathVariable SessionType type, @PathVariable String id) { + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Session.class))) + public ResponseEntity getSession(@PathVariable Session.SessionType type, @PathVariable String id) { try { String sessionDataJson = sessionServiceRequestHandler.getSessionDataJson(type, id); @@ -206,6 +223,8 @@ public ResponseEntity getSession(@PathVariable SessionType type, @PathV } @RequestMapping(value = "/virtual_study", method = RequestMethod.GET) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = VirtualStudy.class)))) public ResponseEntity> getUserStudies() throws JsonProcessingException { if (sessionServiceRequestHandler.isSessionServiceEnabled() && isAuthorized()) { @@ -219,7 +238,7 @@ public ResponseEntity> getUserStudies() throws JsonProcessing HttpEntity httpEntity = new HttpEntity<>(basicDBObject.toString(), sessionServiceRequestHandler.getHttpHeaders()); ResponseEntity> responseEntity = restTemplate.exchange( - sessionServiceURL + SessionType.virtual_study + "/query/fetch", + sessionServiceURL + Session.SessionType.virtual_study + "/query/fetch", HttpMethod.POST, httpEntity, new ParameterizedTypeReference>() {}); @@ -234,25 +253,29 @@ public ResponseEntity> getUserStudies() throws JsonProcessing } @RequestMapping(value = "/{type}", method = RequestMethod.POST) - public ResponseEntity addSession(@PathVariable SessionType type, @RequestBody JSONObject body) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Session.class))) + public ResponseEntity addSession(@PathVariable Session.SessionType type, @RequestBody JSONObject body) throws IOException { return addSession(type, Optional.empty(), body); } @RequestMapping(value = "/virtual_study/save", method = RequestMethod.POST) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Session.class))) public ResponseEntity addUserSavedVirtualStudy(@RequestBody JSONObject body) throws IOException { - return addSession(SessionType.virtual_study, Optional.of(SessionOperation.save), body); + return addSession(Session.SessionType.virtual_study, Optional.of(SessionOperation.save), body); } @RequestMapping(value = "/{type:virtual_study|group|custom_data|custom_gene_list}/{operation}/{id}", method = RequestMethod.GET) - public void updateUsersInSession(@PathVariable SessionType type, @PathVariable String id, - @PathVariable Operation operation, HttpServletResponse response) throws IOException { + public void updateUsersInSession(@PathVariable Session.SessionType type, @PathVariable String id, + @PathVariable Operation operation, HttpServletResponse response) throws IOException { if (sessionServiceRequestHandler.isSessionServiceEnabled() && isAuthorized()) { HttpEntity httpEntity; - if (type.equals(SessionType.custom_data)) { + if (type.equals(Session.SessionType.custom_data)) { String virtualStudyStr = sessionServiceObjectMapper.writeValueAsString(getSession(type, id).getBody()); CustomDataSession customDataSession = sessionServiceObjectMapper.readValue(virtualStudyStr, CustomDataSession.class); CustomAttributeWithData customAttributeWithData = customDataSession.getData(); @@ -260,7 +283,7 @@ public void updateUsersInSession(@PathVariable SessionType type, @PathVariable S updateUserList(operation, users); customAttributeWithData.setUsers(users); httpEntity = new HttpEntity<>(customAttributeWithData, sessionServiceRequestHandler.getHttpHeaders()); - } else if (type.equals(SessionType.custom_gene_list)) { + } else if (type.equals(Session.SessionType.custom_gene_list)) { String customGeneListStr = sessionServiceObjectMapper.writeValueAsString(getSession(type, id).getBody()); CustomGeneList customGeneList = sessionServiceObjectMapper.readValue(customGeneListStr, CustomGeneList.class); CustomGeneListData customGeneListData = customGeneList.getData(); @@ -302,6 +325,8 @@ private void updateUserList(Operation operation, Set users) { } @RequestMapping(value = "/groups/fetch", method = RequestMethod.POST) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = VirtualStudy.class)))) public ResponseEntity> fetchUserGroups( @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) @RequestBody List studyIds) throws IOException { @@ -323,7 +348,7 @@ public ResponseEntity> fetchUserGroups( HttpEntity httpEntity = new HttpEntity<>(queryDBObject.toString(), sessionServiceRequestHandler.getHttpHeaders()); ResponseEntity> responseEntity = restTemplate.exchange( - sessionServiceURL + SessionType.group + "/query/fetch", + sessionServiceURL + Session.SessionType.group + "/query/fetch", HttpMethod.POST, httpEntity, new ParameterizedTypeReference>() {}); @@ -345,7 +370,7 @@ public void updateUserPageSettings(@RequestBody PageSettingsData settingsData, H List basicDBObjects = new ArrayList<>(); basicDBObjects - .add(new BasicDBObject("data.owner", Pattern.compile(userName(), Pattern.CASE_INSENSITIVE))); + .add(new BasicDBObject("data.owner", Pattern.compile(userName(), Pattern.CASE_INSENSITIVE))); basicDBObjects.add(new BasicDBObject("data.origin", new BasicDBObject(QueryOperators.ALL, settingsData.getOrigin()))); basicDBObjects.add(new BasicDBObject("data.origin", @@ -360,7 +385,7 @@ public void updateUserPageSettings(@RequestBody PageSettingsData settingsData, H JSONObject jsonObject = (JSONObject) parser.parse(objectMapper.writeValueAsString(settingsData)); if (pageSettings == null) { - addSession(SessionType.settings, Optional.empty(), jsonObject); + addSession(Session.SessionType.settings, Optional.empty(), jsonObject); } else { updatedPageSettingSession(pageSettings, settingsData, response); } @@ -394,8 +419,9 @@ private void updatedPageSettingSession( RestTemplate restTemplate = new RestTemplate(); HttpEntity httpEntity = new HttpEntity<>(body, sessionServiceRequestHandler.getHttpHeaders()); - - restTemplate.put(sessionServiceURL + pageSettings.getType() + "/" + pageSettings.getId(), httpEntity); + + Session.SessionType type = pageSettings.getType() == null ? Session.SessionType.settings : pageSettings.getType(); + restTemplate.put(sessionServiceURL + type + "/" + pageSettings.getId(), httpEntity); response.setStatus(HttpStatus.OK.value()); } else { response.setStatus(HttpStatus.UNAUTHORIZED.value()); @@ -406,6 +432,8 @@ private void updatedPageSettingSession( } @RequestMapping(value = "/settings/fetch", method = RequestMethod.POST) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = PageSettingsData.class))) public ResponseEntity getPageSettings(@RequestBody PageSettingsIdentifier pageSettingsIdentifier) { try { @@ -413,7 +441,7 @@ public ResponseEntity getPageSettings(@RequestBody PageSetting List basicDBObjects = new ArrayList<>(); basicDBObjects - .add(new BasicDBObject("data.owner", Pattern.compile(userName(), Pattern.CASE_INSENSITIVE))); + .add(new BasicDBObject("data.owner", Pattern.compile(userName(), Pattern.CASE_INSENSITIVE))); basicDBObjects.add(new BasicDBObject("data.origin", new BasicDBObject(QueryOperators.ALL, pageSettingsIdentifier.getOrigin()))); basicDBObjects.add(new BasicDBObject("data.origin", @@ -434,6 +462,8 @@ public ResponseEntity getPageSettings(@RequestBody PageSetting } @RequestMapping(value = "/custom_data/fetch", method = RequestMethod.POST) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CustomDataSession.class)))) public ResponseEntity> fetchCustomProperties( @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) @RequestBody List studyIds) throws IOException { @@ -452,7 +482,7 @@ public ResponseEntity> fetchCustomProperties( sessionServiceRequestHandler.getHttpHeaders()); ResponseEntity> responseEntity = restTemplate.exchange( - sessionServiceURL + SessionType.custom_data + "/query/fetch", + sessionServiceURL + Session.SessionType.custom_data + "/query/fetch", HttpMethod.POST, httpEntity, new ParameterizedTypeReference>() {}); @@ -464,11 +494,15 @@ public ResponseEntity> fetchCustomProperties( } @RequestMapping(value = "/custom_gene_list/save", method = RequestMethod.POST) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Session.class))) public ResponseEntity addUserSavedCustomGeneList(@RequestBody JSONObject body) throws IOException { - return addSession(SessionType.custom_gene_list, Optional.of(SessionOperation.save), body); + return addSession(Session.SessionType.custom_gene_list, Optional.of(SessionOperation.save), body); } @RequestMapping(value = "/custom_gene_list", method = RequestMethod.GET) + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CustomGeneList.class)))) public ResponseEntity> fetchCustomGeneList() throws IOException { if (sessionServiceRequestHandler.isSessionServiceEnabled() && isAuthorized()) { @@ -481,7 +515,7 @@ public ResponseEntity> fetchCustomGeneList() throws IOExcep HttpEntity httpEntity = new HttpEntity<>(basicDBObject.toString(), sessionServiceRequestHandler.getHttpHeaders()); ResponseEntity> responseEntity = restTemplate.exchange( - sessionServiceURL + SessionType.custom_gene_list + "/query/fetch", + sessionServiceURL + Session.SessionType.custom_gene_list + "/query/fetch", HttpMethod.POST, httpEntity, new ParameterizedTypeReference>() {}); diff --git a/src/main/java/org/cbioportal/web/SignificantCopyNumberRegionController.java b/src/main/java/org/cbioportal/web/SignificantCopyNumberRegionController.java new file mode 100644 index 00000000000..48c4919003a --- /dev/null +++ b/src/main/java/org/cbioportal/web/SignificantCopyNumberRegionController.java @@ -0,0 +1,81 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.Gistic; +import org.cbioportal.service.SignificantCopyNumberRegionService; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.SignificantCopyNumberRegionSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Significant Copy Number Regions", description = " ") +public class SignificantCopyNumberRegionController { + + @Autowired + private SignificantCopyNumberRegionService significantCopyNumberRegionService; + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/significant-copy-number-regions", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get significant copy number alteration regions in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Gistic.class)))) + public ResponseEntity> getSignificantCopyNumberRegions( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) SignificantCopyNumberRegionSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, + significantCopyNumberRegionService.getMetaSignificantCopyNumberRegions(studyId).getTotalCount() + .toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + significantCopyNumberRegionService.getSignificantCopyNumberRegions(studyId, projection.name(), pageSize, + pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } +} diff --git a/src/main/java/org/cbioportal/web/SignificantlyMutatedGenesController.java b/src/main/java/org/cbioportal/web/SignificantlyMutatedGenesController.java new file mode 100644 index 00000000000..3a661feeae2 --- /dev/null +++ b/src/main/java/org/cbioportal/web/SignificantlyMutatedGenesController.java @@ -0,0 +1,80 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.cbioportal.model.MutSig; +import org.cbioportal.service.SignificantlyMutatedGeneService; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.sort.SignificantlyMutatedGeneSortBy; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Significantly Mutated Genes", description = " ") +public class SignificantlyMutatedGenesController { + + @Autowired + private SignificantlyMutatedGeneService significantlyMutatedGeneService; + + @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/studies/{studyId}/significantly-mutated-genes", method = RequestMethod.GET, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get significantly mutated genes in a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = MutSig.class)))) + public ResponseEntity> getSignificantlyMutatedGenes( + @Parameter(required = true, description = "Study ID e.g. acc_tcga") + @PathVariable String studyId, + @Parameter(description = "Level of detail of the response") + @RequestParam(defaultValue = "SUMMARY") Projection projection, + @Parameter(description = "Page size of the result list") + @Max(PagingConstants.MAX_PAGE_SIZE) + @Min(PagingConstants.MIN_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, + @Parameter(description = "Name of the property that the result list is sorted by") + @RequestParam(required = false) SignificantlyMutatedGeneSortBy sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { + + if (projection == Projection.META) { + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, + significantlyMutatedGeneService.getMetaSignificantlyMutatedGenes(studyId).getTotalCount().toString()); + return new ResponseEntity<>(responseHeaders, HttpStatus.OK); + } else { + return new ResponseEntity<>( + significantlyMutatedGeneService.getSignificantlyMutatedGenes(studyId, projection.name(), pageSize, + pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); + } + } +} diff --git a/src/main/java/org/cbioportal/web/StaticDataTimestampController.java b/src/main/java/org/cbioportal/web/StaticDataTimestampController.java new file mode 100644 index 00000000000..39f3d5da978 --- /dev/null +++ b/src/main/java/org/cbioportal/web/StaticDataTimestampController.java @@ -0,0 +1,40 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import org.cbioportal.service.StaticDataTimestampService; +import org.cbioportal.web.config.annotation.InternalApi; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.Arrays; +import java.util.List; +import java.util.Map; + +@InternalApi +@RestController +@Validated +@Tag(name = "Timestamps", description = " ") +public class StaticDataTimestampController { + public static final List TIMESTAMP_TABLES = Arrays.asList("gene", "reference_genome_gene"); + @Autowired + private StaticDataTimestampService service; + + @RequestMapping(value = "/api/timestamps", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get the last time each static resource was updated") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Object.class))) + public ResponseEntity> getAllTimestamps() { + return new ResponseEntity<>(service.getTimestamps(TIMESTAMP_TABLES), HttpStatus.OK); + } + +} diff --git a/web/src/main/java/org/cbioportal/web/StructuralVariantController.java b/src/main/java/org/cbioportal/web/StructuralVariantController.java similarity index 75% rename from web/src/main/java/org/cbioportal/web/StructuralVariantController.java rename to src/main/java/org/cbioportal/web/StructuralVariantController.java index b7b4af4d267..69e03bf3303 100644 --- a/web/src/main/java/org/cbioportal/web/StructuralVariantController.java +++ b/src/main/java/org/cbioportal/web/StructuralVariantController.java @@ -23,37 +23,40 @@ package org.cbioportal.web; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; import org.cbioportal.model.StructuralVariant; import org.cbioportal.service.StructuralVariantService; -import org.cbioportal.web.parameter.StructuralVariantFilter; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - import org.cbioportal.web.config.InternalApiTags; import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.StructuralVariantFilter; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.http.HttpStatus; import org.springframework.http.MediaType; import org.springframework.http.ResponseEntity; import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.util.Assert; import org.springframework.validation.annotation.Validated; import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; import org.springframework.web.bind.annotation.RequestMapping; import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RestController; -import org.springframework.web.bind.annotation.RequestBody; -import springfox.documentation.annotations.ApiIgnore; -import javax.validation.Valid; -import java.util.*; +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; @InternalApi -@RestController +@RestController() +@RequestMapping("/api") @Validated -@Api(tags = InternalApiTags.STRUCTURAL_VARIANTS, description = " ") +@Tag(name = InternalApiTags.STRUCTURAL_VARIANTS, description = " ") public class StructuralVariantController { @Autowired private StructuralVariantService structuralVariantService; @@ -61,13 +64,15 @@ public class StructuralVariantController { @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/structural-variant/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers") + @Operation(description = "Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = StructuralVariant.class)))) public ResponseEntity> fetchStructuralVariants( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface @Valid @RequestAttribute(required = false, value = "interceptedStructuralVariantFilter") StructuralVariantFilter interceptedStructuralVariantFilter, - @ApiParam(required = true, value = "List of entrezGeneIds, structural variant queries and molecularProfileIds or sampleMolecularIdentifiers") + @Parameter(required = true, description = "List of entrezGeneIds, structural variant queries and molecularProfileIds or sampleMolecularIdentifiers") @Valid @RequestBody(required = false) StructuralVariantFilter structuralVariantFilter) { List molecularProfileIds = new ArrayList<>(); diff --git a/web/src/main/java/org/cbioportal/web/StudyController.java b/src/main/java/org/cbioportal/web/StudyController.java similarity index 76% rename from web/src/main/java/org/cbioportal/web/StudyController.java rename to src/main/java/org/cbioportal/web/StudyController.java index faf514f645f..d3cf9bc9b39 100644 --- a/web/src/main/java/org/cbioportal/web/StudyController.java +++ b/src/main/java/org/cbioportal/web/StudyController.java @@ -1,8 +1,19 @@ package org.cbioportal.web; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; +import com.fasterxml.jackson.core.JsonParseException; +import com.fasterxml.jackson.databind.JsonMappingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.annotation.PostConstruct; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import jakarta.validation.constraints.Size; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.CancerStudyTags; import org.cbioportal.service.StudyService; @@ -22,6 +33,7 @@ import org.springframework.http.HttpStatus; import org.springframework.http.MediaType; import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; import org.springframework.security.core.Authentication; import org.springframework.security.core.context.SecurityContextHolder; import org.springframework.validation.annotation.Validated; @@ -32,26 +44,16 @@ import org.springframework.web.bind.annotation.RequestParam; import org.springframework.web.bind.annotation.RestController; -import com.fasterxml.jackson.core.JsonParseException; -import com.fasterxml.jackson.databind.JsonMappingException; -import com.fasterxml.jackson.databind.ObjectMapper; - -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.annotation.PostConstruct; -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; - import java.io.IOException; import java.util.HashMap; import java.util.List; import java.util.Map; @PublicApi -@RestController +@RestController() +@RequestMapping("/api") @Validated -@Api(tags = PublicApiTags.STUDIES, description = " ") +@Tag(name = PublicApiTags.STUDIES, description = " ") public class StudyController { @Value("${app.name:unknown}") @@ -83,22 +85,24 @@ private void warmDefaultResponseCache() { } @RequestMapping(value = "/studies", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all studies") + @Operation(description = "Get all studies") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CancerStudy.class)))) public ResponseEntity> getAllStudies( - @ApiParam("Search keyword that applies to name and cancer type of the studies") + @Parameter(description = "Search keyword that applies to name and cancer type of the studies") @RequestParam(required = false) String keyword, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") + @Parameter(description = "Page size of the result list") @Max(PagingConstants.MAX_PAGE_SIZE) @Min(PagingConstants.MIN_PAGE_SIZE) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") + @Parameter(description = "Page number of the result list") @Min(PagingConstants.MIN_PAGE_NUMBER) @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") + @Parameter(description = "Name of the property that the result list is sorted by") @RequestParam(required = false) StudySortBy sortBy, - @ApiParam("Direction of the sort") + @Parameter(description = "Direction of the sort") @RequestParam(defaultValue = "ASC") Direction direction) { @@ -134,9 +138,11 @@ public ResponseEntity> getAllStudies( @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/studies/{studyId}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get a study") + @Operation(description = "Get a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content( schema = @Schema(implementation = CancerStudy.class))) public ResponseEntity getStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") + @Parameter(required = true, description = "Study ID e.g. acc_tcga") @PathVariable String studyId) throws StudyNotFoundException { return new ResponseEntity<>(studyService.getStudy(studyId), HttpStatus.OK); @@ -145,12 +151,14 @@ public ResponseEntity getStudy( @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/studies/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch studies by IDs") + @Operation(description = "Fetch studies by IDs") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CancerStudy.class)))) public ResponseEntity> fetchStudies( - @ApiParam(required = true, value = "List of Study IDs") + @Parameter(required = true, description = "List of Study IDs") @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) @RequestBody List studyIds, - @ApiParam("Level of detail of the response") + @Parameter(description = "Level of detail of the response") @RequestParam(defaultValue = "SUMMARY") Projection projection) { if (projection == Projection.META) { @@ -167,9 +175,11 @@ public ResponseEntity> fetchStudies( @RequestMapping(value = "/studies/{studyId}/tags", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get the tags of a study") + @Operation(description = "Get the tags of a study") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Object.class))) public ResponseEntity getTags( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") + @Parameter(required = true, description = "Study ID e.g. acc_tcga") @PathVariable String studyId) throws JsonParseException, JsonMappingException, IOException { @@ -186,9 +196,11 @@ public ResponseEntity getTags( @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/studies/tags/fetch", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get the study tags by IDs") + @Operation(description = "Get the study tags by IDs") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CancerStudyTags.class)))) public ResponseEntity> getTagsForMultipleStudies( - @ApiParam(required = true, value = "List of Study IDs") + @Parameter(required = true, description = "List of Study IDs") @RequestBody List studyIds ) { diff --git a/src/main/java/org/cbioportal/web/StudyViewController.java b/src/main/java/org/cbioportal/web/StudyViewController.java new file mode 100644 index 00000000000..6ff98aa3ba1 --- /dev/null +++ b/src/main/java/org/cbioportal/web/StudyViewController.java @@ -0,0 +1,1170 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Max; +import jakarta.validation.constraints.Min; +import org.apache.commons.collections4.CollectionUtils; +import org.apache.commons.lang3.math.NumberUtils; +import org.apache.commons.lang3.tuple.ImmutablePair; +import org.apache.commons.math3.stat.correlation.PearsonsCorrelation; +import org.apache.commons.math3.stat.correlation.SpearmansCorrelation; +import org.apache.commons.math3.util.Pair; +import org.cbioportal.model.AlterationCountByGene; +import org.cbioportal.model.AlterationCountByStructuralVariant; +import org.cbioportal.model.AlterationFilter; +import org.cbioportal.model.CaseListDataCount; +import org.cbioportal.model.ClinicalAttribute; +import org.cbioportal.model.ClinicalData; +import org.cbioportal.model.ClinicalDataBin; +import org.cbioportal.model.ClinicalDataCollection; +import org.cbioportal.model.ClinicalDataCountItem; +import org.cbioportal.model.ClinicalEventTypeCount; +import org.cbioportal.model.ClinicalViolinPlotData; +import org.cbioportal.model.CopyNumberCountByGene; +import org.cbioportal.model.DensityPlotBin; +import org.cbioportal.model.DensityPlotData; +import org.cbioportal.model.GenericAssayDataBin; +import org.cbioportal.model.GenericAssayDataCountItem; +import org.cbioportal.model.GenomicDataBin; +import org.cbioportal.model.GenomicDataCount; +import org.cbioportal.model.GenomicDataCountItem; +import org.cbioportal.model.Patient; +import org.cbioportal.model.Sample; +import org.cbioportal.model.SampleList; +import org.cbioportal.service.ClinicalAttributeService; +import org.cbioportal.service.ClinicalDataService; +import org.cbioportal.service.ClinicalEventService; +import org.cbioportal.service.PatientService; +import org.cbioportal.service.SampleListService; +import org.cbioportal.service.SampleService; +import org.cbioportal.service.StudyViewService; +import org.cbioportal.service.ViolinPlotService; +import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.service.util.ClinicalAttributeUtil; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.ClinicalDataBinCountFilter; +import org.cbioportal.web.parameter.ClinicalDataBinFilter; +import org.cbioportal.web.parameter.ClinicalDataCountFilter; +import org.cbioportal.web.parameter.ClinicalDataFilter; +import org.cbioportal.web.parameter.ClinicalDataType; +import org.cbioportal.web.parameter.DataBinMethod; +import org.cbioportal.web.parameter.Direction; +import org.cbioportal.web.parameter.GenericAssayDataBinCountFilter; +import org.cbioportal.web.parameter.GenericAssayDataCountFilter; +import org.cbioportal.web.parameter.GenericAssayDataFilter; +import org.cbioportal.web.parameter.GenomicDataBinCountFilter; +import org.cbioportal.web.parameter.GenomicDataCountFilter; +import org.cbioportal.web.parameter.GenomicDataFilter; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.Projection; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.cbioportal.web.parameter.StudyViewFilter; +import org.cbioportal.web.util.ClinicalDataBinUtil; +import org.cbioportal.web.util.ClinicalDataFetcher; +import org.cbioportal.web.util.StudyViewFilterApplier; +import org.cbioportal.web.util.StudyViewFilterUtil; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.context.ApplicationContext; +import org.springframework.http.HttpHeaders; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PostMapping; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import java.util.Objects; +import java.util.function.Function; +import java.util.stream.Collectors; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Study View", description = " ") +public class StudyViewController { + + public static final int CLINICAL_TAB_MAX_PAGE_SIZE = 1000000; + + @Autowired + private ApplicationContext applicationContext; + StudyViewController instance; + + @Autowired + private StudyViewFilterApplier studyViewFilterApplier; + @Autowired + private ClinicalDataService clinicalDataService; + @Autowired + private ClinicalDataFetcher clinicalDataFetcher; + @Autowired + private SampleService sampleService; + @Autowired + private PatientService patientService; + @Autowired + private StudyViewFilterUtil studyViewFilterUtil; + @Autowired + private ClinicalAttributeService clinicalAttributeService; + @Autowired + private ViolinPlotService violinPlotService; + @Autowired + private ClinicalAttributeUtil clinicalAttributeUtil; + @Autowired + private SampleListService sampleListService; + @Autowired + private StudyViewService studyViewService; + @Autowired + private ClinicalDataBinUtil clinicalDataBinUtil; + @Autowired + private ClinicalEventService clinicalEventService; + + private StudyViewController getInstance() { + if (Objects.isNull(instance)) { + instance = applicationContext.getBean(StudyViewController.class); + } + return instance; + } + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-data-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch clinical data counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalDataCountItem.class)))) + public ResponseEntity> fetchClinicalDataCounts( + @Parameter(required = true, description = "Clinical data count filter") + @Valid @RequestBody(required = false) ClinicalDataCountFilter clinicalDataCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataCountFilter") ClinicalDataCountFilter interceptedClinicalDataCountFilter) { + + List attributes = interceptedClinicalDataCountFilter.getAttributes(); + StudyViewFilter studyViewFilter = interceptedClinicalDataCountFilter.getStudyViewFilter(); + + if (attributes.size() == 1) { + studyViewFilterUtil.removeSelfFromFilter(attributes.get(0).getAttributeId(), studyViewFilter); + } + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(studyViewFilter); + List result = + this.getInstance().cachedClinicalDataCounts(interceptedClinicalDataCountFilter,singleStudyUnfiltered); + return new ResponseEntity<>(result, HttpStatus.OK); + + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cachedClinicalDataCounts( + ClinicalDataCountFilter interceptedClinicalDataCountFilter, boolean singleStudyUnfiltered + ) { + List attributes = interceptedClinicalDataCountFilter.getAttributes(); + StudyViewFilter studyViewFilter = interceptedClinicalDataCountFilter.getStudyViewFilter(); + if (attributes.size() == 1) { + studyViewFilterUtil.removeSelfFromFilter(attributes.get(0).getAttributeId(), studyViewFilter); + } + List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); + + if (filteredSampleIdentifiers.isEmpty()) { + return new ArrayList<>(); + } + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); + + List result = clinicalDataService.fetchClinicalDataCounts( + studyIds, sampleIds, attributes.stream().map(a -> a.getAttributeId()).collect(Collectors.toList())); + + return result; + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-data-bin-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch clinical data bin counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalDataBin.class)))) + public ResponseEntity> fetchClinicalDataBinCounts( + @Parameter(description = "Method for data binning") + @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, + @Parameter(required = true, description = "Clinical data bin count filter") + @Valid @RequestBody(required = false) ClinicalDataBinCountFilter clinicalDataBinCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataBinCountFilter") ClinicalDataBinCountFilter interceptedClinicalDataBinCountFilter + ) { + StudyViewFilter studyViewFilter = clinicalDataBinUtil.removeSelfFromFilter(interceptedClinicalDataBinCountFilter); + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(studyViewFilter); + List clinicalDataBins = + this.getInstance().cachableFetchClinicalDataBinCounts(dataBinMethod, interceptedClinicalDataBinCountFilter, singleStudyUnfiltered); + + return new ResponseEntity<>(clinicalDataBins, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cachableFetchClinicalDataBinCounts( + DataBinMethod dataBinMethod, + ClinicalDataBinCountFilter interceptedClinicalDataBinCountFilter, + boolean singleStudyUnfiltered + ) { + return clinicalDataBinUtil.fetchClinicalDataBinCounts( + dataBinMethod, + interceptedClinicalDataBinCountFilter, + // we don't need to remove filter again since we already did it in the previous step + false + ); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/custom-data-bin-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch custom data bin counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalDataBin.class)))) + public ResponseEntity> fetchCustomDataBinCounts( + @Parameter(description = "Method for data binning") + @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, + @Parameter(required = true, description = "Clinical data bin count filter") + @Valid @RequestBody(required = false) ClinicalDataBinCountFilter clinicalDataBinCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataBinCountFilter") ClinicalDataBinCountFilter interceptedClinicalDataBinCountFilter + ) { + // TODO code shared with ClinicalDataController.fetchCustomDataCounts + List attributes = interceptedClinicalDataBinCountFilter.getAttributes(); + StudyViewFilter studyViewFilter = interceptedClinicalDataBinCountFilter.getStudyViewFilter(); + if (attributes.size() == 1) { + studyViewFilterUtil.removeSelfCustomDataFromFilter(attributes.get(0).getAttributeId(), studyViewFilter); + } + List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); + + if (filteredSampleIdentifiers.isEmpty()) { + return new ResponseEntity<>(new ArrayList<>(), HttpStatus.OK); + } + + final List clinicalDataBins = clinicalDataBinUtil.fetchCustomDataBinCounts(dataBinMethod, interceptedClinicalDataBinCountFilter, false); + + return new ResponseEntity<>(clinicalDataBins, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection',T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/mutated-genes/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch mutated genes by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = AlterationCountByGene.class)))) + public ResponseEntity> fetchMutatedGenes( + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter + ) throws StudyNotFoundException { + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List alterationCountByGenes = this.getInstance().cachedFetchMutatedGenes(interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(alterationCountByGenes, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cachedFetchMutatedGenes( + StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered + ) throws StudyNotFoundException { + AlterationFilter annotationFilters = interceptedStudyViewFilter.getAlterationFilter(); + + List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + List alterationCountByGenes = new ArrayList<>(); + if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); + alterationCountByGenes = studyViewService.getMutationAlterationCountByGenes(studyIds, sampleIds, annotationFilters); + } + return alterationCountByGenes; + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/structuralvariant-genes/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch structural variant genes by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = AlterationCountByGene.class)))) + public ResponseEntity> fetchStructuralVariantGenes( + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. This attribute is needed for the @PreAuthorize tag above. + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter + ) throws StudyNotFoundException { + + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List alterationCountByGenes = + this.getInstance().cacheableFetchStructuralVariantGenes(interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(alterationCountByGenes, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cacheableFetchStructuralVariantGenes( + StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered + ) throws StudyNotFoundException { + AlterationFilter annotationFilters = interceptedStudyViewFilter.getAlterationFilter(); + + List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + List alterationCountByGenes = new ArrayList<>(); + if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); + alterationCountByGenes = studyViewService.getStructuralVariantAlterationCountByGenes(studyIds, sampleIds, annotationFilters); + } + return alterationCountByGenes; + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/structuralvariant-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch structural variant genes by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = AlterationCountByStructuralVariant.class)))) + public ResponseEntity> fetchStructuralVariantCounts( + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. This attribute is needed for the @PreAuthorize tag above. + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter + ) throws StudyNotFoundException { + + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List alterationCountByStructuralVariants = + this.getInstance().cacheableFetchStructuralVariantCounts(interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(alterationCountByStructuralVariants, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cacheableFetchStructuralVariantCounts( + StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered + ) throws StudyNotFoundException { + + List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); + return studyViewService.getStructuralVariantAlterationCounts(studyIds, sampleIds, interceptedStudyViewFilter.getAlterationFilter()); + } + return new ArrayList<>(); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/cna-genes/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch CNA genes by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = CopyNumberCountByGene.class)))) + public ResponseEntity> fetchCNAGenes( + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter + ) throws StudyNotFoundException { + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List copyNumberCountByGenes = this.getInstance().cacheableFetchCNAGenes(interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(copyNumberCountByGenes, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cacheableFetchCNAGenes(StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered) throws StudyNotFoundException { + AlterationFilter alterationFilter = interceptedStudyViewFilter.getAlterationFilter(); + + List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + List copyNumberCountByGenes = new ArrayList<>(); + if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); + copyNumberCountByGenes = studyViewService.getCNAAlterationCountByGenes(studyIds, sampleIds, alterationFilter); + } + return copyNumberCountByGenes; + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/filtered-samples/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch sample IDs by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = Sample.class)))) + public ResponseEntity> fetchFilteredSamples( + @Parameter(description = "Whether to negate the study view filters") + @RequestParam(defaultValue = "false") Boolean negateFilters, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter, + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter) { + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + + studyViewFilterUtil.extractStudyAndSampleIds( + studyViewFilterApplier.apply(interceptedStudyViewFilter, negateFilters), studyIds, sampleIds); + + List result = new ArrayList<>(); + if (!sampleIds.isEmpty()) { + result = sampleService.fetchSamples(studyIds, sampleIds, Projection.ID.name()); + } + return new ResponseEntity<>(result, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profile-sample-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch sample counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenomicDataCount.class)))) + public ResponseEntity> fetchMolecularProfileSampleCounts( + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter + ) + { + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List sampleCounts = this.getInstance().cacheableFetchMolecularProfileSampleCounts(interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(sampleCounts, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cacheableFetchMolecularProfileSampleCounts( + StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered + ) { + List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + List genomicDataCounts = new ArrayList<>(); + if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); + genomicDataCounts = studyViewService.getGenomicDataCounts(studyIds, sampleIds); + } + return genomicDataCounts; + } + + private static boolean isLogScalePossibleForAttribute(String clinicalAttributeId) { + return clinicalAttributeId.equals("MUTATION_COUNT"); + } + + private static double logScale(double val) { + return Math.log(1+val); + } + + private static double parseValueLog(ClinicalData c) { + return StudyViewController.logScale(Double.parseDouble(c.getAttrValue())); + } + + private static double parseValueLinear(ClinicalData c) { + return Double.parseDouble(c.getAttrValue()); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-data-density-plot/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch clinical data density plot bins by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = DensityPlotData.class))) + @Validated + public ResponseEntity fetchClinicalDataDensityPlot( + @Parameter(required = true, description = "Clinical Attribute ID of the X axis") + @RequestParam String xAxisAttributeId, + @Parameter(description = "Number of the bins in X axis") + @RequestParam(defaultValue = "50") Integer xAxisBinCount, + @Parameter(description = "Starting point of the X axis, if different than smallest value") + @RequestParam(required = false) BigDecimal xAxisStart, + @Parameter(description = "Starting point of the X axis, if different than largest value") + @RequestParam(required = false) BigDecimal xAxisEnd, + @Parameter(required = true, description = "Clinical Attribute ID of the Y axis") + @RequestParam String yAxisAttributeId, + @Parameter(description = "Number of the bins in Y axis") + @RequestParam(defaultValue = "50") Integer yAxisBinCount, + @Parameter(description = "Starting point of the Y axis, if different than smallest value") + @RequestParam(required = false) BigDecimal yAxisStart, + @Parameter(description = "Starting point of the Y axis, if different than largest value") + @RequestParam(required = false) BigDecimal yAxisEnd, + @Parameter(description="Use log scale for X axis") + @RequestParam(required = false, defaultValue = "false") Boolean xAxisLogScale, + @Schema(defaultValue = "false") + @Parameter(description="Use log scale for Y axis") + @RequestParam(required = false, defaultValue = "false") Boolean yAxisLogScale, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter, + @Parameter(required = true, description = "Study view filter") + @RequestBody(required = false) StudyViewFilter studyViewFilter) { + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(studyViewFilterApplier.apply(interceptedStudyViewFilter), studyIds, sampleIds); + DensityPlotData result = new DensityPlotData(); + result.setBins(new ArrayList<>()); + if (sampleIds.isEmpty()) { + return new ResponseEntity<>(result, HttpStatus.OK); + } + + List sampleAttributeIds = new ArrayList<>(); + List patientAttributeIds = new ArrayList<>(); + + List clinicalAttributes = clinicalAttributeService + .getClinicalAttributesByStudyIdsAndAttributeIds(studyIds, + Arrays.asList(xAxisAttributeId, yAxisAttributeId)); + + clinicalAttributeUtil.extractCategorizedClinicalAttributes(clinicalAttributes, sampleAttributeIds, patientAttributeIds, patientAttributeIds); + + List patientIds = new ArrayList<>(); + List studyIdsOfPatients = new ArrayList<>(); + Map>> patientToSamples = null; + + + if (CollectionUtils.isNotEmpty(patientAttributeIds)) { + List samples = sampleService.fetchSamples(studyIds, sampleIds, Projection.DETAILED.name()); + List patients = patientService.getPatientsOfSamples(studyIds, sampleIds); + patientIds = patients.stream().map(Patient::getStableId).collect(Collectors.toList()); + studyIdsOfPatients = patients.stream().map(Patient::getCancerStudyIdentifier).collect(Collectors.toList()); + patientToSamples = samples.stream().collect( + Collectors.groupingBy(Sample::getPatientStableId, Collectors.groupingBy(Sample::getCancerStudyIdentifier)) + ); + } + + List clinicalDataList = clinicalDataFetcher.fetchClinicalData( + studyIds, sampleIds, patientIds, studyIdsOfPatients, sampleAttributeIds, patientAttributeIds, null + ); + + List sampleClinicalDataList; + // put all clinical data into sample form + if (CollectionUtils.isNotEmpty(patientAttributeIds)) { + sampleClinicalDataList = new ArrayList<>(); + for (ClinicalData d: clinicalDataList) { + if (d.getSampleId() == null) { + // null sample id means its a patient data, + // we need to distribute the value to samples + List samplesForPatient = patientToSamples.get( + d.getPatientId() + ).get(d.getStudyId()); + if (samplesForPatient != null) { + for (Sample s: samplesForPatient) { + ClinicalData newData = new ClinicalData(); + newData.setAttrId(d.getAttrId()); + newData.setPatientId(d.getPatientId()); + newData.setStudyId(d.getStudyId()); + newData.setAttrValue(d.getAttrValue()); + newData.setSampleId(s.getStableId()); + sampleClinicalDataList.add(newData); + } + } else { + // patient has no samples - this shouldn't happen and could affect the integrity + // of the data analysis + return new ResponseEntity<>(null, HttpStatus.INTERNAL_SERVER_ERROR); + } + } else { + // if its a sample data, just add it to the list + sampleClinicalDataList.add(d); + } + } + } else { + sampleClinicalDataList = clinicalDataList; + } + + // clinicalDataMap is a map sampleId->studyId->data + Map>> clinicalDataMap = sampleClinicalDataList.stream().collect(Collectors.groupingBy(ClinicalData::getSampleId, + Collectors.groupingBy(ClinicalData::getStudyId))); + + List filteredClinicalDataList = new ArrayList<>(); + clinicalDataMap.forEach((k, v) -> v.forEach((m, n) -> { + if ( + // n.size() == 2 means we have clinical data for the sample for both of the queried attributes + n.size() == 2 && + // check if both of the sample data are numerical + NumberUtils.isCreatable(n.get(0).getAttrValue()) && NumberUtils.isCreatable(n.get(1).getAttrValue())) { + filteredClinicalDataList.addAll(n); + } + })); + if (filteredClinicalDataList.isEmpty()) { + return new ResponseEntity<>(result, HttpStatus.OK); + } + + Map> partition = filteredClinicalDataList.stream().collect( + Collectors.partitioningBy(c -> c.getAttrId().equals(xAxisAttributeId))); + + boolean useXLogScale = xAxisLogScale && StudyViewController.isLogScalePossibleForAttribute(xAxisAttributeId); + boolean useYLogScale = yAxisLogScale && StudyViewController.isLogScalePossibleForAttribute(yAxisAttributeId); + + double[] xValues = partition.get(true).stream().mapToDouble( + useXLogScale ? StudyViewController::parseValueLog : StudyViewController::parseValueLinear + ).toArray(); + double[] yValues = partition.get(false).stream().mapToDouble( + useYLogScale ? StudyViewController::parseValueLog : StudyViewController::parseValueLinear + ).toArray(); + double[] xValuesCopy = Arrays.copyOf(xValues, xValues.length); + double[] yValuesCopy = Arrays.copyOf(yValues, yValues.length); + Arrays.sort(xValuesCopy); + Arrays.sort(yValuesCopy); + + double xAxisStartValue = xAxisStart == null ? xValuesCopy[0] : + (useXLogScale ? StudyViewController.logScale(xAxisStart.doubleValue()) : xAxisStart.doubleValue()); + double xAxisEndValue = xAxisEnd == null ? xValuesCopy[xValuesCopy.length - 1] : + (useXLogScale ? StudyViewController.logScale(xAxisEnd.doubleValue()) : xAxisEnd.doubleValue()); + double yAxisStartValue = yAxisStart == null ? yValuesCopy[0] : + (useYLogScale ? StudyViewController.logScale(yAxisStart.doubleValue()) : yAxisStart.doubleValue()); + double yAxisEndValue = yAxisEnd == null ? yValuesCopy[yValuesCopy.length - 1] : + (useYLogScale ? StudyViewController.logScale(yAxisEnd.doubleValue()) : yAxisEnd.doubleValue()); + double xAxisBinInterval = (xAxisEndValue - xAxisStartValue) / xAxisBinCount; + double yAxisBinInterval = (yAxisEndValue - yAxisStartValue) / yAxisBinCount; + List bins = result.getBins(); + for (int i = 0; i < xAxisBinCount; i++) { + for (int j = 0; j < yAxisBinCount; j++) { + DensityPlotBin densityPlotBin = new DensityPlotBin(); + densityPlotBin.setBinX(BigDecimal.valueOf(xAxisStartValue + (i * xAxisBinInterval))); + densityPlotBin.setBinY(BigDecimal.valueOf(yAxisStartValue + (j * yAxisBinInterval))); + densityPlotBin.setCount(0); + bins.add(densityPlotBin); + } + } + + for (int i = 0; i < xValues.length; i++) { + double xValue = xValues[i]; + double yValue = yValues[i]; + int xBinIndex = (int) ((xValue - xAxisStartValue) / xAxisBinInterval); + int yBinIndex = (int) ((yValue - yAxisStartValue) / yAxisBinInterval); + int index = (int) (((xBinIndex - (xBinIndex == xAxisBinCount ? 1 : 0)) * yAxisBinCount) + + (yBinIndex - (yBinIndex == yAxisBinCount ? 1 : 0))); + DensityPlotBin densityPlotBin = bins.get(index); + densityPlotBin.setCount(densityPlotBin.getCount() + 1); + BigDecimal xValueBigDecimal = BigDecimal.valueOf(xValue); + BigDecimal yValueBigDecimal = BigDecimal.valueOf(yValue); + if (densityPlotBin.getMinX() != null) { + if (densityPlotBin.getMinX().compareTo(xValueBigDecimal) > 0) { + densityPlotBin.setMinX(xValueBigDecimal); + } + } else { + densityPlotBin.setMinX(xValueBigDecimal); + } + if (densityPlotBin.getMaxX() != null) { + if (densityPlotBin.getMaxX().compareTo(xValueBigDecimal) < 0) { + densityPlotBin.setMaxX(xValueBigDecimal); + } + } else { + densityPlotBin.setMaxX(xValueBigDecimal); + } + if (densityPlotBin.getMinY() != null) { + if (densityPlotBin.getMinY().compareTo(yValueBigDecimal) > 0) { + densityPlotBin.setMinY(yValueBigDecimal); + } + } else { + densityPlotBin.setMinY(yValueBigDecimal); + } + if (densityPlotBin.getMaxY() != null) { + if (densityPlotBin.getMaxY().compareTo(yValueBigDecimal) < 0) { + densityPlotBin.setMaxY(yValueBigDecimal); + } + } else { + densityPlotBin.setMaxY(yValueBigDecimal); + } + } + + if (xValues.length > 1) { + // need at least 2 entries in each to compute correlation + result.setPearsonCorr(new PearsonsCorrelation().correlation(xValues, yValues)); + result.setSpearmanCorr(new SpearmansCorrelation().correlation(xValues, yValues)); + } else { + // if less than 1 entry, just set 0 correlation + result.setSpearmanCorr(0.0); + result.setPearsonCorr(0.0); + } + + // filter out empty bins + result.setBins(result.getBins().stream().filter((bin)->(bin.getCount() > 0)).collect(Collectors.toList())); + + return new ResponseEntity<>(result, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-data-violin-plots/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch violin plot curves per categorical clinical data value, filtered by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = ClinicalViolinPlotData.class))) + public ResponseEntity fetchClinicalDataViolinPlots( + @Parameter(required = true, description = "Clinical Attribute ID of the categorical attribute") + @RequestParam String categoricalAttributeId, + @Parameter(required = true, description = "Clinical Attribute ID of the numerical attribute") + @RequestParam String numericalAttributeId, + @Parameter(description = "Starting point of the violin plot axis, if different than smallest value") + @RequestParam(required = false) BigDecimal axisStart, + @Parameter(description = "Ending point of the violin plot axis, if different than largest value") + @RequestParam(required = false) BigDecimal axisEnd, + @Parameter(description = "Number of points in the curve") + @RequestParam(required = false, defaultValue = "100") BigDecimal numCurvePoints, + @Parameter(description="Use log scale for the numerical attribute") + @RequestParam(required = false, defaultValue = "false") Boolean logScale, + @Parameter(description="Sigma stepsize multiplier") + @RequestParam(required = false, defaultValue = "1") BigDecimal sigmaMultiplier, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter, + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter) { + + ClinicalViolinPlotData result = new ClinicalViolinPlotData(); + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + // first get samples that are filtered by all current filters - this will give us + // the by-row sample counts + studyViewFilterUtil.extractStudyAndSampleIds(studyViewFilterApplier.apply(interceptedStudyViewFilter), studyIds, sampleIds); + List filteredSamples = sampleService.fetchSamples(studyIds, sampleIds, Projection.DETAILED.name()); + + List studyIdsWithoutNumericalFilter = new ArrayList<>(); + List sampleIdsWithoutNumericalFilter = new ArrayList<>(); + // next, get samples that are filtered without the numerical filter - this will + // give us the violin plot data + if (interceptedStudyViewFilter.getClinicalDataFilters() != null) { + // Remove numerical clinical data filter, if there is one + interceptedStudyViewFilter.getClinicalDataFilters().stream() + .filter(f->f.getAttributeId().equals(numericalAttributeId)) + .findAny() + .ifPresent(f->interceptedStudyViewFilter.getClinicalDataFilters().remove(f)); + } + studyViewFilterUtil.extractStudyAndSampleIds( + studyViewFilterApplier.apply(interceptedStudyViewFilter), + studyIdsWithoutNumericalFilter, + sampleIdsWithoutNumericalFilter + ); + + if (sampleIds.isEmpty()) { + return new ResponseEntity<>(result, HttpStatus.OK); + } + + List sampleAttributeIds = new ArrayList<>(); + List patientAttributeIds = new ArrayList<>(); + + List clinicalAttributes = clinicalAttributeService + .getClinicalAttributesByStudyIdsAndAttributeIds(studyIds, + Arrays.asList(categoricalAttributeId, numericalAttributeId)); + + clinicalAttributeUtil.extractCategorizedClinicalAttributes(clinicalAttributes, sampleAttributeIds, patientAttributeIds, patientAttributeIds); + + List patientIds = new ArrayList<>(); + List studyIdsOfPatients = new ArrayList<>(); + Map>> patientToSamples = null; + + if (CollectionUtils.isNotEmpty(patientAttributeIds)) { + List samplesWithoutNumericalFilter = sampleService.fetchSamples(studyIdsWithoutNumericalFilter, sampleIdsWithoutNumericalFilter, Projection.DETAILED.name()); + List patients = patientService.getPatientsOfSamples(studyIdsWithoutNumericalFilter, sampleIdsWithoutNumericalFilter); + patientIds = patients.stream().map(Patient::getStableId).collect(Collectors.toList()); + studyIdsOfPatients = patients.stream().map(Patient::getCancerStudyIdentifier).collect(Collectors.toList()); + patientToSamples = samplesWithoutNumericalFilter.stream().collect( + Collectors.groupingBy(Sample::getPatientStableId, Collectors.groupingBy(Sample::getCancerStudyIdentifier)) + ); + } + + List clinicalDataList = clinicalDataFetcher.fetchClinicalData( + studyIdsWithoutNumericalFilter, sampleIdsWithoutNumericalFilter, patientIds, studyIdsOfPatients, sampleAttributeIds, patientAttributeIds, null + ); + + List sampleClinicalDataList; + // put all clinical data into sample form + if (CollectionUtils.isNotEmpty(patientAttributeIds)) { + sampleClinicalDataList = new ArrayList<>(); + for (ClinicalData d: clinicalDataList) { + if (d.getSampleId() == null) { + // null sample id means its a patient data, + // we need to distribute the value to samples + List samplesForPatient = patientToSamples.get(d.getPatientId()).get(d.getStudyId()); + if (samplesForPatient != null) { + for (Sample s: samplesForPatient) { + ClinicalData newData = new ClinicalData(); + newData.setInternalId(s.getInternalId()); + newData.setAttrId(d.getAttrId()); + newData.setPatientId(d.getPatientId()); + newData.setStudyId(d.getStudyId()); + newData.setAttrValue(d.getAttrValue()); + newData.setSampleId(s.getStableId()); + sampleClinicalDataList.add(newData); + } + } else { + // patient has no samples - this shouldn't happen and could affect the integrity + // of the data analysis + return new ResponseEntity<>(null, HttpStatus.INTERNAL_SERVER_ERROR); + } + } else { + // if its a sample data, just add it to the list + sampleClinicalDataList.add(d); + } + } + } else { + sampleClinicalDataList = clinicalDataList; + } + + boolean useLogScale = logScale && StudyViewController.isLogScalePossibleForAttribute(numericalAttributeId); + + + result = violinPlotService.getClinicalViolinPlotData( + sampleClinicalDataList, + filteredSamples, + axisStart, + axisEnd, + numCurvePoints, + useLogScale, + sigmaMultiplier + ); + + return new ResponseEntity<>(result, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/sample-lists-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch case list sample counts by study view filter") + public List fetchCaseListCounts( + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter) { + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + List filteredSampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); + List sampleLists = sampleListService.getAllSampleListsInStudies(studyIds, + Projection.DETAILED.name()); + + HashMap sampleCountBySampleListId = new HashMap(); + + Map filteredSampleSet = filteredSampleIdentifiers.stream() + .collect(Collectors.toMap(sampleidentifier -> studyViewFilterUtil + .getCaseUniqueKey(sampleidentifier.getStudyId(), sampleidentifier.getSampleId()), + Function.identity())); + + for (SampleList sampleList : sampleLists) { + for (String sampleId : sampleList.getSampleIds()) { + if (filteredSampleSet.containsKey( + studyViewFilterUtil.getCaseUniqueKey(sampleList.getCancerStudyIdentifier(), sampleId))) { + Integer count = sampleCountBySampleListId.getOrDefault(sampleList.getStableId(), 0); + sampleCountBySampleListId.put(sampleList.getStableId(), count + 1); + } + } + } + + return studyViewFilterUtil + .categorizeSampleLists(sampleLists) + .entrySet() + .stream() + .map(entry -> { + CaseListDataCount dataCount = new CaseListDataCount(); + dataCount.setValue(entry.getKey()); + + Integer count = entry.getValue().stream().mapToInt(sampleList -> { + return sampleCountBySampleListId.getOrDefault(sampleList.getStableId(), 0); + }).sum(); + + dataCount.setCount(count); + dataCount.setLabel(entry.getValue().get(0).getName()); + + return dataCount; + }) + .filter(dataCount -> dataCount.getCount() > 0) + .collect(Collectors.toList()); + + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/genomic-data-bin-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch genomic data bin counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenomicDataBin.class)))) + public ResponseEntity> fetchGenomicDataBinCounts( + @Parameter(description = "Method for data binning") @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, + @Parameter(required = true, description = "Genomic data bin count filter") @Valid @RequestBody(required = false) GenomicDataBinCountFilter genomicDataBinCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this + // attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedGenomicDataBinCountFilter") GenomicDataBinCountFilter interceptedGenomicDataBinCountFilter) { + + return new ResponseEntity<>(studyViewFilterApplier.getDataBins(dataBinMethod, interceptedGenomicDataBinCountFilter), HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/genomic-data-counts/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch genomic data counts by GenomicDataCountFilter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenomicDataCountItem.class)))) + public ResponseEntity> fetchGenomicDataCounts( + @Parameter(required = true, description = "Genomic data count filter") @Valid @RequestBody(required = false) GenomicDataCountFilter genomicDataCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(required = true, description = "Intercepted Genomic Data Count Filter") + @Valid @RequestAttribute(required = false, value = "interceptedGenomicDataCountFilter") GenomicDataCountFilter interceptedGenomicDataCountFilter + ) throws StudyNotFoundException { + List gdFilters = interceptedGenomicDataCountFilter.getGenomicDataFilters(); + StudyViewFilter studyViewFilter = interceptedGenomicDataCountFilter.getStudyViewFilter(); + // when there is only one filter, it means study view is doing a single chart filter operation + // remove filter from studyViewFilter to return all data counts + // the reason we do this is to make sure after chart get filtered, user can still see unselected portion of the chart + if (gdFilters.size() == 1) { + studyViewFilterUtil.removeSelfFromGenomicDataFilter( + gdFilters.get(0).getHugoGeneSymbol(), + gdFilters.get(0).getProfileType(), + studyViewFilter); + } + List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); + + if (filteredSampleIdentifiers.isEmpty()) { + return new ResponseEntity<>(new ArrayList<>(), HttpStatus.OK); + } + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); + + List result = studyViewService.getCNAAlterationCountsByGeneSpecific( + studyIds, + sampleIds, + gdFilters.stream().map(gdFilter -> new Pair<>(gdFilter.getHugoGeneSymbol(), gdFilter.getProfileType())).collect(Collectors.toList())); + + return new ResponseEntity<>(result, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/generic-assay-data-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch generic assay data counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayDataCountItem.class)))) + public ResponseEntity> fetchGenericAssayDataCounts( + @Parameter(required = true, description = "Generic assay data count filter") @Valid @RequestBody(required = false) GenericAssayDataCountFilter genericAssayDataCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this + // attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedGenericAssayDataCountFilter") GenericAssayDataCountFilter interceptedGenericAssayDataCountFilter) { + + List gaFilters = interceptedGenericAssayDataCountFilter.getGenericAssayDataFilters(); + StudyViewFilter studyViewFilter = interceptedGenericAssayDataCountFilter.getStudyViewFilter(); + // when there is only one filter, it means study view is doing a single chart filter operation + // remove filter from studyViewFilter to return all data counts + // the reason we do this is to make sure after chart get filtered, user can still see unselected portion of the chart + if (gaFilters.size() == 1) { + studyViewFilterUtil.removeSelfFromGenericAssayFilter(gaFilters.get(0).getStableId(), studyViewFilter); + } + List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); + + if (filteredSampleIdentifiers.isEmpty()) { + return new ResponseEntity<>(new ArrayList<>(), HttpStatus.OK); + } + + List studyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); + + List result = studyViewService.fetchGenericAssayDataCounts( + sampleIds, + studyIds, + gaFilters.stream().map(GenericAssayDataFilter::getStableId).collect(Collectors.toList()), + gaFilters.stream().map(GenericAssayDataFilter::getProfileType).collect(Collectors.toList())); + + return new ResponseEntity<>(result, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/generic-assay-data-bin-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch generic assay data bin counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = GenericAssayDataBin.class)))) + public ResponseEntity> fetchGenericAssayDataBinCounts( + @Parameter(description = "Method for data binning") @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, + @Parameter(required = true, description = "Generic assay data bin count filter") @Valid @RequestBody(required = false) GenericAssayDataBinCountFilter genericAssayDataBinCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this + // attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedGenericAssayDataBinCountFilter") GenericAssayDataBinCountFilter interceptedGenericAssayDataBinCountFilter) { + + return new ResponseEntity<>(studyViewFilterApplier.getDataBins(dataBinMethod, interceptedGenericAssayDataBinCountFilter), HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-data-table/fetch", method = RequestMethod.POST, + consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Fetch clinical data for the Clinical Tab of Study View") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = ClinicalDataCollection.class))) + public ResponseEntity fetchClinicalDataClinicalTable( + @Parameter(required = true, description = "Study view filter") + @Valid @RequestBody(required = false) + StudyViewFilter studyViewFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") + Collection involvedCancerStudies, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") + StudyViewFilter interceptedStudyViewFilter, + @Parameter(description = "Page size of the result list") + @Max(CLINICAL_TAB_MAX_PAGE_SIZE) + @Min(PagingConstants.NO_PAGING_PAGE_SIZE) + @RequestParam(defaultValue = PagingConstants.DEFAULT_NO_PAGING_PAGE_SIZE) + Integer pageSize, + @Parameter(description = "Page number of the result list") + @Min(PagingConstants.MIN_PAGE_NUMBER) + @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) + Integer pageNumber, + @Parameter(description = "Search term to filter sample rows. Samples are returned " + + "with a partial match to the search term for any sample clinical attribute.") + @RequestParam(defaultValue = "") + String searchTerm, + @Parameter(description = "sampleId, patientId, or the ATTR_ID to sorted by") + @RequestParam(required = false) + // TODO: Can we narrow down this string to a specific enum? + String sortBy, + @Parameter(description = "Direction of the sort") + @RequestParam(defaultValue = "ASC") + Direction direction + ) { + List sampleStudyIds = new ArrayList<>(); + List sampleIds = new ArrayList<>(); + List filteredSampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, sampleStudyIds, sampleIds); + + List sampleClinicalData = clinicalDataService.fetchSampleClinicalTable( + sampleStudyIds, + sampleIds, + pageSize, + pageNumber, + searchTerm, + sortBy, + direction.name() + ); + Integer total = clinicalDataService.fetchSampleClinicalTableCount( + sampleStudyIds, + sampleIds, + searchTerm, + sortBy, + direction.name() + ); + + // Return empty when possible. + if (sampleClinicalData.isEmpty()) { + return new ResponseEntity<>(new ClinicalDataCollection(), HttpStatus.OK); + } + + // Resolve for which patient clinical data should be included. + final List> patientIdentifiers = sampleClinicalData.stream() + .map(d -> new ImmutablePair<>(d.getStudyId(), d.getPatientId())) + .distinct() + .collect(Collectors.toList()); + List patientStudyIds = patientIdentifiers.stream().map(p -> p.getLeft()).collect(Collectors.toList()); + List patientIds = patientIdentifiers.stream().map(p -> p.getRight()).collect(Collectors.toList()); + + + List searchAllAttributes = null; + final List patientClinicalData = clinicalDataService.fetchClinicalData(patientStudyIds, patientIds, + searchAllAttributes, ClinicalDataType.PATIENT.name(), Projection.SUMMARY.name()); + + final ClinicalDataCollection clinicalDataCollection = new ClinicalDataCollection(); + clinicalDataCollection.setSampleClinicalData(sampleClinicalData); + clinicalDataCollection.setPatientClinicalData(patientClinicalData); + + HttpHeaders responseHeaders = new HttpHeaders(); + responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, total.toString()); + return new ResponseEntity<>(clinicalDataCollection, responseHeaders, HttpStatus.OK); + } + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/clinical-event-type-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get Counts of Clinical Event Types by Study View Filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalEventTypeCount.class)))) + public ResponseEntity> getClinicalEventTypeCounts( + @Parameter(required = true, description = "Study view filter") + @Valid + @RequestBody(required = false) + StudyViewFilter studyViewFilter, + + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") + Collection involvedCancerStudies, + + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid + @RequestAttribute(required = false, value = "interceptedStudyViewFilter") + StudyViewFilter interceptedStudyViewFilter + ) { + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List eventTypeCounts = this.getInstance().cachedClinicalEventTypeCounts(interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(eventTypeCounts, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cachedClinicalEventTypeCounts( + StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered + ){ + List filteredSampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + List sampleIds = new ArrayList<>(); + List studyIds = new ArrayList<>(); + studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); + return clinicalEventService.getClinicalEventTypeCounts(studyIds, sampleIds); + } +} diff --git a/src/main/java/org/cbioportal/web/TestController.java b/src/main/java/org/cbioportal/web/TestController.java new file mode 100644 index 00000000000..3c227e7a97b --- /dev/null +++ b/src/main/java/org/cbioportal/web/TestController.java @@ -0,0 +1,14 @@ +package org.cbioportal.web; + +import org.springframework.web.bind.annotation.GetMapping; +import org.springframework.web.bind.annotation.RestController; + +@RestController +public class TestController { + + @GetMapping("/api/hello") + public String index() { + return "Greetings from Spring Boot!"; + } + +} diff --git a/src/main/java/org/cbioportal/web/TreatmentController.java b/src/main/java/org/cbioportal/web/TreatmentController.java new file mode 100644 index 00000000000..4beaababa9e --- /dev/null +++ b/src/main/java/org/cbioportal/web/TreatmentController.java @@ -0,0 +1,213 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.ClinicalEventKeyCode; +import org.cbioportal.model.PatientTreatmentRow; +import org.cbioportal.model.SampleTreatmentRow; +import org.cbioportal.service.TreatmentService; +import org.cbioportal.web.config.annotation.PublicApi; +import org.cbioportal.web.parameter.PagingConstants; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.cbioportal.web.parameter.StudyViewFilter; +import org.cbioportal.web.util.StudyViewFilterApplier; +import org.cbioportal.web.util.StudyViewFilterUtil; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.context.ApplicationContext; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.RequestAttribute; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; +import java.util.Objects; +import java.util.Set; + +@PublicApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Treatments", description = " ") +public class TreatmentController { + @Autowired + private ApplicationContext applicationContext; + TreatmentController instance; + + + @Autowired + private StudyViewFilterUtil studyViewFilterUtil; + @Autowired + private StudyViewFilterUtil filterUtil; + + @Autowired + private TreatmentService treatmentService; + + @Autowired + private StudyViewFilterApplier studyViewFilterApplier; + + private TreatmentController getInstance() { + if (Objects.isNull(instance)) { + instance = applicationContext.getBean(TreatmentController.class); + } + return instance; + } + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/treatments/patient", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all patient level treatments") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = PatientTreatmentRow.class)))) + public ResponseEntity> getAllPatientTreatments( + @Parameter(required = false ) + @RequestParam(name = "tier", required = false, defaultValue = "Agent") + ClinicalEventKeyCode tier, + + @Parameter(required = true, description = "Study view filter") + @Valid + @RequestBody(required = false) + StudyViewFilter studyViewFilter, + + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") + Collection involvedCancerStudies, + + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid + @RequestAttribute(required = false, value = "interceptedStudyViewFilter") + StudyViewFilter interceptedStudyViewFilter + ) { + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List treatments = + this.getInstance().cachableGetAllPatientTreatments(tier, interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(treatments, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cachableGetAllPatientTreatments( + ClinicalEventKeyCode tier, StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered + ) { + List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + List sampleIds = new ArrayList<>(); + List studyIds = new ArrayList<>(); + filterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); + + return treatmentService.getAllPatientTreatmentRows(sampleIds, studyIds, tier); + } + + + @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/treatments/sample", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get all sample level treatments") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = SampleTreatmentRow.class)))) + public ResponseEntity> getAllSampleTreatments( + @Schema(defaultValue = "Agent") + @Parameter(required = false) + @RequestParam(name = "tier", required = false, defaultValue = "Agent") + ClinicalEventKeyCode tier, + + @Parameter(required = true, description = "Study view filter") + @Valid + @RequestBody(required = false) + StudyViewFilter studyViewFilter, + + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface + @RequestAttribute(required = false, value = "involvedCancerStudies") + Collection involvedCancerStudies, + + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. + @Valid + @RequestAttribute(required = false, value = "interceptedStudyViewFilter") + StudyViewFilter interceptedStudyViewFilter + ) { + boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); + List treatments = + this.getInstance().cacheableGetAllSampleTreatments(tier, interceptedStudyViewFilter, singleStudyUnfiltered); + return new ResponseEntity<>(treatments, HttpStatus.OK); + } + + @Cacheable( + cacheResolver = "staticRepositoryCacheOneResolver", + condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" + ) + public List cacheableGetAllSampleTreatments( + ClinicalEventKeyCode tier, StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered + ) { + List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); + List sampleIds = new ArrayList<>(); + List studyIds = new ArrayList<>(); + filterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); + + return treatmentService.getAllSampleTreatmentRows(sampleIds, studyIds, tier); + } + + @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/treatments/display-patient", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Should patient level treatments be displayed") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Boolean.class))) + public ResponseEntity getContainsTreatmentData( + @Schema(defaultValue = "Agent") + @Parameter(required = false) + @RequestParam(name = "tier", required = false, defaultValue = "Agent") + ClinicalEventKeyCode tier, + + @Parameter(required = true, description = "List of Study IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody + Set studyIds + ) { + Boolean containsTreatmentData = this.getInstance().cacheableGetContainsTreatmentData(studyIds, tier); + return new ResponseEntity<>(containsTreatmentData, HttpStatus.OK); + } + + // Caching enabled for any number of studies as the requests contains only studyIds and the response is a boolean + @Cacheable(cacheResolver = "generalRepositoryCacheResolver", condition = "@cacheEnabledConfig.getEnabled()") + public Boolean cacheableGetContainsTreatmentData(Set studyIds, ClinicalEventKeyCode tier) { + return treatmentService.containsTreatmentData(new ArrayList<>(studyIds), tier); + } + + @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/treatments/display-sample", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Should sample level treatments be displayed") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(schema = @Schema(implementation = Boolean.class))) + public ResponseEntity getContainsSampleTreatmentData( + @Schema(defaultValue = "Agent") + @Parameter(required = false) + @RequestParam(name = "tier", required = false, defaultValue = "Agent") + ClinicalEventKeyCode tier, + + @Parameter(required = true, description = "List of Study IDs") + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + @RequestBody + Set studyIds + ) { + Boolean containsTreatmentData = this.getInstance().cacheableGetContainsSampleTreatmentData(studyIds, tier); + return new ResponseEntity<>(containsTreatmentData, HttpStatus.OK); + } + + @Cacheable(cacheResolver = "generalRepositoryCacheResolver", condition = "@cacheEnabledConfig.getEnabled()") + public Boolean cacheableGetContainsSampleTreatmentData(Set studyIds, ClinicalEventKeyCode tier) { + return treatmentService.containsSampleTreatmentData(new ArrayList<>(studyIds), tier); + } +} diff --git a/src/main/java/org/cbioportal/web/VariantCountController.java b/src/main/java/org/cbioportal/web/VariantCountController.java new file mode 100644 index 00000000000..cff905808e4 --- /dev/null +++ b/src/main/java/org/cbioportal/web/VariantCountController.java @@ -0,0 +1,69 @@ +package org.cbioportal.web; + +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.constraints.Size; +import org.cbioportal.model.VariantCount; +import org.cbioportal.service.VariantCountService; +import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.parameter.VariantCountIdentifier; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.HttpStatus; +import org.springframework.http.MediaType; +import org.springframework.http.ResponseEntity; +import org.springframework.security.access.prepost.PreAuthorize; +import org.springframework.validation.annotation.Validated; +import org.springframework.web.bind.annotation.PathVariable; +import org.springframework.web.bind.annotation.RequestBody; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.bind.annotation.RestController; + +import java.util.ArrayList; +import java.util.List; + +@InternalApi +@RestController() +@RequestMapping("/api") +@Validated +@Tag(name = "Variant Counts", description = " ") +public class VariantCountController { + + private static final int VARIANT_COUNT_MAX_PAGE_SIZE = 50000; + + @Autowired + private VariantCountService variantCountService; + + @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") + @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/variant-counts/fetch", + method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, + produces = MediaType.APPLICATION_JSON_VALUE) + @Operation(description = "Get counts of specific variants within a mutation molecular profile") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = VariantCount.class)))) + public ResponseEntity> fetchVariantCounts( + @Parameter(required = true, description = "Molecular Profile ID e.g. acc_tcga_mutations") + @PathVariable String molecularProfileId, + @Parameter(required = true, description = "List of variant count identifiers") + @Size(min = 1, max = VARIANT_COUNT_MAX_PAGE_SIZE) + @RequestBody List variantCountIdentifiers) throws MolecularProfileNotFoundException { + + List entrezGeneIds = new ArrayList<>(); + List keywords = new ArrayList<>(); + + for (VariantCountIdentifier variantCountIdentifier : variantCountIdentifiers) { + + entrezGeneIds.add(variantCountIdentifier.getEntrezGeneId()); + keywords.add(variantCountIdentifier.getKeyword()); + } + + return new ResponseEntity<>(variantCountService.fetchVariantCounts(molecularProfileId, entrezGeneIds, keywords), + HttpStatus.OK); + } +} diff --git a/web/src/main/java/org/cbioportal/web/config/CustomObjectMapper.java b/src/main/java/org/cbioportal/web/config/CustomObjectMapper.java similarity index 96% rename from web/src/main/java/org/cbioportal/web/config/CustomObjectMapper.java rename to src/main/java/org/cbioportal/web/config/CustomObjectMapper.java index 740a73dbb81..d5853d58218 100644 --- a/web/src/main/java/org/cbioportal/web/config/CustomObjectMapper.java +++ b/src/main/java/org/cbioportal/web/config/CustomObjectMapper.java @@ -32,13 +32,9 @@ package org.cbioportal.web.config; -import java.util.HashMap; -import java.util.Map; - import com.fasterxml.jackson.annotation.JsonInclude; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.SerializationFeature; - import org.cbioportal.model.CancerStudy; import org.cbioportal.model.ClinicalAttribute; import org.cbioportal.model.ClinicalAttributeCount; @@ -67,7 +63,9 @@ import org.cbioportal.model.SampleList; import org.cbioportal.model.StructuralVariant; import org.cbioportal.model.TypeOfCancer; -import org.cbioportal.session_service.domain.Session; +import org.cbioportal.service.util.CustomAttributeWithData; +import org.cbioportal.service.util.CustomDataSession; +import org.cbioportal.utils.removeme.Session; import org.cbioportal.web.mixin.CancerStudyMixin; import org.cbioportal.web.mixin.ClinicalAttributeCountMixin; import org.cbioportal.web.mixin.ClinicalAttributeMixin; @@ -98,18 +96,21 @@ import org.cbioportal.web.mixin.SessionMixin; import org.cbioportal.web.mixin.StructuralVariantMixin; import org.cbioportal.web.mixin.TypeOfCancerMixin; -import org.cbioportal.service.util.CustomDataSession; import org.cbioportal.web.parameter.PageSettings; import org.cbioportal.web.parameter.PageSettingsData; import org.cbioportal.web.parameter.StudyPageSettings; import org.cbioportal.web.parameter.VirtualStudy; import org.cbioportal.web.parameter.VirtualStudyData; -import org.cbioportal.service.util.CustomAttributeWithData; +import java.util.HashMap; +import java.util.Map; + +// This bean automatically registers with MappingJackson2HttpMessageConverter +// By marking it @Primary it will displace the default ObjectMapper +// See: https://www.baeldung.com/spring-boot-customize-jackson-objectmapper#1-objectmapper public class CustomObjectMapper extends ObjectMapper { public CustomObjectMapper() { - super.setSerializationInclusion(JsonInclude.Include.NON_NULL); super.enable(SerializationFeature.WRITE_ENUMS_USING_TO_STRING); Map, Class> mixinMap = new HashMap<>(); diff --git a/core/src/main/scripts/importer/__init__.py b/src/main/java/org/cbioportal/web/config/DataAccessTokenConfig.java similarity index 100% rename from core/src/main/scripts/importer/__init__.py rename to src/main/java/org/cbioportal/web/config/DataAccessTokenConfig.java diff --git a/web/src/main/java/org/cbioportal/web/config/InternalApiTags.java b/src/main/java/org/cbioportal/web/config/InternalApiTags.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/config/InternalApiTags.java rename to src/main/java/org/cbioportal/web/config/InternalApiTags.java diff --git a/src/main/java/org/cbioportal/web/config/JacksonConfig.java b/src/main/java/org/cbioportal/web/config/JacksonConfig.java new file mode 100644 index 00000000000..6e0c7a00247 --- /dev/null +++ b/src/main/java/org/cbioportal/web/config/JacksonConfig.java @@ -0,0 +1,15 @@ +package org.cbioportal.web.config; + +import com.fasterxml.jackson.databind.ObjectMapper; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.context.annotation.Primary; + +@Configuration +public class JacksonConfig { + @Bean + @Primary + public ObjectMapper objectMapper() { + return new CustomObjectMapper(); + } +} diff --git a/src/main/java/org/cbioportal/web/config/MethodValidationConfig.java b/src/main/java/org/cbioportal/web/config/MethodValidationConfig.java new file mode 100644 index 00000000000..52ec3c80cfb --- /dev/null +++ b/src/main/java/org/cbioportal/web/config/MethodValidationConfig.java @@ -0,0 +1,23 @@ +package org.cbioportal.web.config; + +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.validation.beanvalidation.LocalValidatorFactoryBean; +import org.springframework.validation.beanvalidation.MethodValidationPostProcessor; + +@Configuration +public class MethodValidationConfig { + + @Bean + public MethodValidationPostProcessor methodValidationPostProcessor() { + MethodValidationPostProcessor processor = new MethodValidationPostProcessor(); + processor.setValidator(validatorFactoryBean()); + return processor; + } + + @Bean + public LocalValidatorFactoryBean validatorFactoryBean() { + return new LocalValidatorFactoryBean(); + } + +} diff --git a/web/src/main/java/org/cbioportal/web/config/PublicApiTags.java b/src/main/java/org/cbioportal/web/config/PublicApiTags.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/config/PublicApiTags.java rename to src/main/java/org/cbioportal/web/config/PublicApiTags.java diff --git a/src/main/java/org/cbioportal/web/config/SwaggerConfig.java b/src/main/java/org/cbioportal/web/config/SwaggerConfig.java new file mode 100644 index 00000000000..1c3b485865a --- /dev/null +++ b/src/main/java/org/cbioportal/web/config/SwaggerConfig.java @@ -0,0 +1,86 @@ +package org.cbioportal.web.config; + +import com.fasterxml.jackson.databind.ObjectMapper; +import io.swagger.v3.core.converter.ModelConverters; +import io.swagger.v3.core.jackson.ModelResolver; +import io.swagger.v3.oas.models.ExternalDocumentation; +import io.swagger.v3.oas.models.OpenAPI; +import io.swagger.v3.oas.models.info.Contact; +import io.swagger.v3.oas.models.info.Info; +import io.swagger.v3.oas.models.info.License; +import org.cbioportal.web.config.annotation.InternalApi; +import org.cbioportal.web.config.annotation.PublicApi; +import org.springdoc.core.customizers.OperationCustomizer; +import org.springdoc.core.models.GroupedOpenApi; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.web.bind.annotation.RequestMapping; +import org.springframework.web.bind.annotation.RequestMethod; +import org.springframework.web.method.HandlerMethod; + +import java.lang.annotation.Annotation; +import java.util.stream.Stream; + + +@Configuration +public class SwaggerConfig { + + @Bean + public GroupedOpenApi publicApi() { + return GroupedOpenApi.builder() + .group("public") + .addOpenApiMethodFilter(method -> method.getDeclaringClass().isAnnotationPresent(PublicApi.class)) + .addOperationCustomizer(customizeOperation()) + .pathsToMatch("/api/**") + .build(); + } + + @Bean + public GroupedOpenApi internalApi() { + return GroupedOpenApi.builder() + .group("internal") + .addOpenApiMethodFilter(method -> method.getDeclaringClass().isAnnotationPresent(InternalApi.class)) + .addOperationCustomizer(customizeOperation()) + .pathsToMatch("/api/**") + .build(); + } + + @Bean + public OpenAPI springShopOpenAPI(ObjectMapper customObjectMapper) { + ModelConverters.getInstance().addConverter(new ModelResolver(customObjectMapper)); + return new OpenAPI() + .info(new Info().title("cBioPortal web Public API [Alpha]") + .description("A web service for supplying JSON formatted data to cBioPortal clients. " + + "Please note that this API is currently in beta and subject to change.") + .version("1.0 (beta). Backwards compatibility will be maintained (after 1.0 release)") + .license(new License().name("License").url("https://github.com/cBioPortal/cbioportal/blob/master/LICENSE")) + .contact(new Contact().name("cbioportal").url("https://www.cbioportal.org").email("cbioportal@googlegroups.com"))) + .externalDocs(new ExternalDocumentation() + .description("SpringShop Wiki Documentation") + .url("https://springshop.wiki.github.org/docs")); + } + + @Bean + public OperationCustomizer customizeOperation() { + return (operation, handlerMethod) -> { + // TODO: Add HTTP Action to EndPoint should remove eventually + String httpMethod = extractHttpMethod(handlerMethod); + String originalOperationId = operation.getOperationId(); + String newOperationId = originalOperationId + "Using" + httpMethod; + + operation.setOperationId(newOperationId); + return operation; + }; + } + + private String extractHttpMethod(HandlerMethod handlerMethod) { + Annotation[] declaredAnnotations = handlerMethod.getMethod().getDeclaredAnnotations(); + for (var annotation : declaredAnnotations) { + if (annotation instanceof RequestMapping requestMapping) { + return Stream.of(requestMapping.method()).findFirst().map(RequestMethod::toString).orElse(""); + } + } + return ""; + } + +} diff --git a/web/src/main/java/org/cbioportal/web/config/WebServletContextListener.java b/src/main/java/org/cbioportal/web/config/WebServletContextListener.java similarity index 91% rename from web/src/main/java/org/cbioportal/web/config/WebServletContextListener.java rename to src/main/java/org/cbioportal/web/config/WebServletContextListener.java index d4a2b8eb4ce..b05ec7b710f 100644 --- a/web/src/main/java/org/cbioportal/web/config/WebServletContextListener.java +++ b/src/main/java/org/cbioportal/web/config/WebServletContextListener.java @@ -1,12 +1,12 @@ package org.cbioportal.web.config; -import org.apache.commons.lang3.StringUtils; +import jakarta.servlet.ServletContextEvent; +import jakarta.servlet.ServletContextListener; import org.springframework.beans.factory.InitializingBean; -import javax.servlet.ServletContextEvent; -import javax.servlet.ServletContextListener; import java.io.*; import java.util.Properties; +import org.springframework.util.ObjectUtils; /** * Created by Hongxin Zhang on 11/15/19. @@ -46,13 +46,13 @@ public void afterPropertiesSet() throws Exception { } private void checkOncokbInfo() { - if(StringUtils.isEmpty(this.oncokbToken) && (StringUtils.isEmpty(this.oncokbURL) || this.oncokbURL.equalsIgnoreCase(DEFAULT_ONCOKB_URL))) { - System.out.println("\n----------------------------------------------------------------------------------------------------------------"); + if(ObjectUtils.isEmpty(this.oncokbToken) && (ObjectUtils.isEmpty(this.oncokbURL) || this.oncokbURL.equalsIgnoreCase(DEFAULT_ONCOKB_URL))) { + System.out.println("----------------------------------------------------------------------------------------------------------------"); // oncokb.org is deprecated, www.oncokb.org should be used System.out.println("-- You are connecting to the OncoKB public instance which does not include any therapeutic information."); System.out.println("-- Please consider obtaining a license to support future OncoKB development by following https://docs.cbioportal.org/2.4-integration-with-other-webservices/oncokb-data-access."); System.out.println("-- Thank you."); - System.out.println("----------------------------------------------------------------------------------------------------------------\n"); + System.out.println("----------------------------------------------------------------------------------------------------------------"); } } diff --git a/web/src/main/java/org/cbioportal/web/config/annotation/InternalApi.java b/src/main/java/org/cbioportal/web/config/annotation/InternalApi.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/config/annotation/InternalApi.java rename to src/main/java/org/cbioportal/web/config/annotation/InternalApi.java diff --git a/web/src/main/java/org/cbioportal/web/config/annotation/PublicApi.java b/src/main/java/org/cbioportal/web/config/annotation/PublicApi.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/config/annotation/PublicApi.java rename to src/main/java/org/cbioportal/web/config/annotation/PublicApi.java diff --git a/web/src/main/java/org/cbioportal/web/error/ErrorResponse.java b/src/main/java/org/cbioportal/web/error/ErrorResponse.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/error/ErrorResponse.java rename to src/main/java/org/cbioportal/web/error/ErrorResponse.java diff --git a/web/src/main/java/org/cbioportal/web/error/GlobalExceptionHandler.java b/src/main/java/org/cbioportal/web/error/GlobalExceptionHandler.java similarity index 96% rename from web/src/main/java/org/cbioportal/web/error/GlobalExceptionHandler.java rename to src/main/java/org/cbioportal/web/error/GlobalExceptionHandler.java index b5737b3fd4c..75bc5c55e6e 100644 --- a/web/src/main/java/org/cbioportal/web/error/GlobalExceptionHandler.java +++ b/src/main/java/org/cbioportal/web/error/GlobalExceptionHandler.java @@ -1,5 +1,9 @@ package org.cbioportal.web.error; +import jakarta.validation.ConstraintViolation; +import jakarta.validation.ConstraintViolationException; +import jakarta.validation.ElementKind; +import jakarta.validation.Path; import org.cbioportal.service.exception.*; import org.springframework.beans.TypeMismatchException; import org.springframework.http.HttpStatus; @@ -13,12 +17,12 @@ import org.springframework.web.bind.annotation.ControllerAdvice; import org.springframework.web.bind.annotation.ExceptionHandler; -import javax.validation.ConstraintViolation; -import javax.validation.ConstraintViolationException; -import javax.validation.ElementKind; -import javax.validation.Path; import java.util.Iterator; + +// TODO +// - consider extending extends ResponseEntityExceptionHandler +// - check controllers for not catching exceptions themselves @ControllerAdvice("org.cbioportal.web") public class GlobalExceptionHandler { diff --git a/web/src/main/java/org/cbioportal/web/interceptor/UniqueKeyInterceptor.java b/src/main/java/org/cbioportal/web/interceptor/UniqueKeyInterceptor.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/interceptor/UniqueKeyInterceptor.java rename to src/main/java/org/cbioportal/web/interceptor/UniqueKeyInterceptor.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/CancerStudyMixin.java b/src/main/java/org/cbioportal/web/mixin/CancerStudyMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/CancerStudyMixin.java rename to src/main/java/org/cbioportal/web/mixin/CancerStudyMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ClinicalAttributeCountMixin.java b/src/main/java/org/cbioportal/web/mixin/ClinicalAttributeCountMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ClinicalAttributeCountMixin.java rename to src/main/java/org/cbioportal/web/mixin/ClinicalAttributeCountMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ClinicalAttributeMixin.java b/src/main/java/org/cbioportal/web/mixin/ClinicalAttributeMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ClinicalAttributeMixin.java rename to src/main/java/org/cbioportal/web/mixin/ClinicalAttributeMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ClinicalDataCountMixin.java b/src/main/java/org/cbioportal/web/mixin/ClinicalDataCountMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ClinicalDataCountMixin.java rename to src/main/java/org/cbioportal/web/mixin/ClinicalDataCountMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ClinicalDataMixin.java b/src/main/java/org/cbioportal/web/mixin/ClinicalDataMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ClinicalDataMixin.java rename to src/main/java/org/cbioportal/web/mixin/ClinicalDataMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ClinicalEventDataMixin.java b/src/main/java/org/cbioportal/web/mixin/ClinicalEventDataMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ClinicalEventDataMixin.java rename to src/main/java/org/cbioportal/web/mixin/ClinicalEventDataMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ClinicalEventMixin.java b/src/main/java/org/cbioportal/web/mixin/ClinicalEventMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ClinicalEventMixin.java rename to src/main/java/org/cbioportal/web/mixin/ClinicalEventMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/CopyNumberSegMixin.java b/src/main/java/org/cbioportal/web/mixin/CopyNumberSegMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/CopyNumberSegMixin.java rename to src/main/java/org/cbioportal/web/mixin/CopyNumberSegMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/DataAccessTokenMixin.java b/src/main/java/org/cbioportal/web/mixin/DataAccessTokenMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/DataAccessTokenMixin.java rename to src/main/java/org/cbioportal/web/mixin/DataAccessTokenMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/DiscreteCopyNumberDataMixin.java b/src/main/java/org/cbioportal/web/mixin/DiscreteCopyNumberDataMixin.java similarity index 83% rename from web/src/main/java/org/cbioportal/web/mixin/DiscreteCopyNumberDataMixin.java rename to src/main/java/org/cbioportal/web/mixin/DiscreteCopyNumberDataMixin.java index 310633fa732..ef9a17f3871 100644 --- a/web/src/main/java/org/cbioportal/web/mixin/DiscreteCopyNumberDataMixin.java +++ b/src/main/java/org/cbioportal/web/mixin/DiscreteCopyNumberDataMixin.java @@ -5,5 +5,5 @@ public class DiscreteCopyNumberDataMixin { @JsonProperty("namespaceColumns") - private String annotationJson; + private Object annotationJson; } \ No newline at end of file diff --git a/web/src/main/java/org/cbioportal/web/mixin/GeneMixin.java b/src/main/java/org/cbioportal/web/mixin/GeneMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/GeneMixin.java rename to src/main/java/org/cbioportal/web/mixin/GeneMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/GenePanelMixin.java b/src/main/java/org/cbioportal/web/mixin/GenePanelMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/GenePanelMixin.java rename to src/main/java/org/cbioportal/web/mixin/GenePanelMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/GenePanelToGeneMixin.java b/src/main/java/org/cbioportal/web/mixin/GenePanelToGeneMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/GenePanelToGeneMixin.java rename to src/main/java/org/cbioportal/web/mixin/GenePanelToGeneMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/GenesetCorrelationMixin.java b/src/main/java/org/cbioportal/web/mixin/GenesetCorrelationMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/GenesetCorrelationMixin.java rename to src/main/java/org/cbioportal/web/mixin/GenesetCorrelationMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/GenesetMixin.java b/src/main/java/org/cbioportal/web/mixin/GenesetMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/GenesetMixin.java rename to src/main/java/org/cbioportal/web/mixin/GenesetMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/GenesetMolecularDataMixin.java b/src/main/java/org/cbioportal/web/mixin/GenesetMolecularDataMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/GenesetMolecularDataMixin.java rename to src/main/java/org/cbioportal/web/mixin/GenesetMolecularDataMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/GisticMixin.java b/src/main/java/org/cbioportal/web/mixin/GisticMixin.java similarity index 90% rename from web/src/main/java/org/cbioportal/web/mixin/GisticMixin.java rename to src/main/java/org/cbioportal/web/mixin/GisticMixin.java index fa0f22f38ec..5913c07dbb5 100644 --- a/web/src/main/java/org/cbioportal/web/mixin/GisticMixin.java +++ b/src/main/java/org/cbioportal/web/mixin/GisticMixin.java @@ -3,6 +3,8 @@ import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonProperty; +import java.math.BigDecimal; + public class GisticMixin { @JsonIgnore diff --git a/web/src/main/java/org/cbioportal/web/mixin/GisticToGeneMixin.java b/src/main/java/org/cbioportal/web/mixin/GisticToGeneMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/GisticToGeneMixin.java rename to src/main/java/org/cbioportal/web/mixin/GisticToGeneMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/MolecularProfileMixin.java b/src/main/java/org/cbioportal/web/mixin/MolecularProfileMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/MolecularProfileMixin.java rename to src/main/java/org/cbioportal/web/mixin/MolecularProfileMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/MutSigMixin.java b/src/main/java/org/cbioportal/web/mixin/MutSigMixin.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/mixin/MutSigMixin.java rename to src/main/java/org/cbioportal/web/mixin/MutSigMixin.java index e0973756ef0..f837ef99240 100644 --- a/web/src/main/java/org/cbioportal/web/mixin/MutSigMixin.java +++ b/src/main/java/org/cbioportal/web/mixin/MutSigMixin.java @@ -3,6 +3,8 @@ import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonProperty; +import java.math.BigDecimal; + public class MutSigMixin { @JsonIgnore diff --git a/src/main/java/org/cbioportal/web/mixin/MutationMixin.java b/src/main/java/org/cbioportal/web/mixin/MutationMixin.java new file mode 100644 index 00000000000..36e59eaba4e --- /dev/null +++ b/src/main/java/org/cbioportal/web/mixin/MutationMixin.java @@ -0,0 +1,23 @@ +package org.cbioportal.web.mixin; + +import com.fasterxml.jackson.annotation.JsonProperty; +import com.fasterxml.jackson.annotation.JsonRawValue; +import io.swagger.v3.oas.annotations.media.Schema; + +public class MutationMixin { + + @JsonProperty("variantAllele") + private String tumorSeqAllele; + @JsonProperty("refseqMrnaId") + private String refseqMrnaId; + @JsonProperty("proteinPosStart") + private Integer proteinPosStart; + @JsonProperty("proteinPosEnd") + private Integer proteinPosEnd; + @JsonProperty("chr") + private String chr; + + @Schema(type = "java.util.Map") + @JsonProperty("namespaceColumns") + private Object annotationJSON; +} diff --git a/web/src/main/java/org/cbioportal/web/mixin/MutationSpectrumMixin.java b/src/main/java/org/cbioportal/web/mixin/MutationSpectrumMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/MutationSpectrumMixin.java rename to src/main/java/org/cbioportal/web/mixin/MutationSpectrumMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/PatientMixin.java b/src/main/java/org/cbioportal/web/mixin/PatientMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/PatientMixin.java rename to src/main/java/org/cbioportal/web/mixin/PatientMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ReferenceGenomeGeneMixin.java b/src/main/java/org/cbioportal/web/mixin/ReferenceGenomeGeneMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ReferenceGenomeGeneMixin.java rename to src/main/java/org/cbioportal/web/mixin/ReferenceGenomeGeneMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/ResourceDefinitionMixin.java b/src/main/java/org/cbioportal/web/mixin/ResourceDefinitionMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/ResourceDefinitionMixin.java rename to src/main/java/org/cbioportal/web/mixin/ResourceDefinitionMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/SampleListMixin.java b/src/main/java/org/cbioportal/web/mixin/SampleListMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/SampleListMixin.java rename to src/main/java/org/cbioportal/web/mixin/SampleListMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/SampleMixin.java b/src/main/java/org/cbioportal/web/mixin/SampleMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/SampleMixin.java rename to src/main/java/org/cbioportal/web/mixin/SampleMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/SessionDataMixin.java b/src/main/java/org/cbioportal/web/mixin/SessionDataMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/SessionDataMixin.java rename to src/main/java/org/cbioportal/web/mixin/SessionDataMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/SessionMixin.java b/src/main/java/org/cbioportal/web/mixin/SessionMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/SessionMixin.java rename to src/main/java/org/cbioportal/web/mixin/SessionMixin.java diff --git a/web/src/main/java/org/cbioportal/web/mixin/StructuralVariantMixin.java b/src/main/java/org/cbioportal/web/mixin/StructuralVariantMixin.java similarity index 81% rename from web/src/main/java/org/cbioportal/web/mixin/StructuralVariantMixin.java rename to src/main/java/org/cbioportal/web/mixin/StructuralVariantMixin.java index 54e5283640e..a0d840ed5ff 100644 --- a/web/src/main/java/org/cbioportal/web/mixin/StructuralVariantMixin.java +++ b/src/main/java/org/cbioportal/web/mixin/StructuralVariantMixin.java @@ -5,5 +5,5 @@ public class StructuralVariantMixin { @JsonProperty("namespaceColumns") - private String annotationJson; + private Object annotationJson; } \ No newline at end of file diff --git a/web/src/main/java/org/cbioportal/web/mixin/TypeOfCancerMixin.java b/src/main/java/org/cbioportal/web/mixin/TypeOfCancerMixin.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/mixin/TypeOfCancerMixin.java rename to src/main/java/org/cbioportal/web/mixin/TypeOfCancerMixin.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/BinsGeneratorConfig.java b/src/main/java/org/cbioportal/web/parameter/BinsGeneratorConfig.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/BinsGeneratorConfig.java rename to src/main/java/org/cbioportal/web/parameter/BinsGeneratorConfig.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalAttributeCountFilter.java b/src/main/java/org/cbioportal/web/parameter/ClinicalAttributeCountFilter.java similarity index 90% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalAttributeCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalAttributeCountFilter.java index 8bf16750665..63e59aa5944 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/ClinicalAttributeCountFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/ClinicalAttributeCountFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataBinCountFilter.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataBinCountFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataBinCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataBinCountFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataBinFilter.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataBinFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataBinFilter.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataBinFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataCountFilter.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataCountFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataCountFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataFilter.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataFilter.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataIdentifier.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataIdentifier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataIdentifier.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataMultiStudyFilter.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataMultiStudyFilter.java similarity index 95% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataMultiStudyFilter.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataMultiStudyFilter.java index 098141b0abf..784331533e7 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataMultiStudyFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/ClinicalDataMultiStudyFilter.java @@ -2,7 +2,7 @@ import org.cbioportal.web.ClinicalDataController; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.Size; import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataSingleStudyFilter.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataSingleStudyFilter.java similarity index 94% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataSingleStudyFilter.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataSingleStudyFilter.java index a80fab8a0df..f76f9daf0b7 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataSingleStudyFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/ClinicalDataSingleStudyFilter.java @@ -1,8 +1,8 @@ package org.cbioportal.web.parameter; +import jakarta.validation.constraints.Size; import org.cbioportal.web.ClinicalDataController; -import javax.validation.constraints.Size; import java.util.List; import static org.cbioportal.web.parameter.PagingConstants.MAX_PAGE_SIZE; diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalDataType.java b/src/main/java/org/cbioportal/web/parameter/ClinicalDataType.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalDataType.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalDataType.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ClinicalTrackConfig.java b/src/main/java/org/cbioportal/web/parameter/ClinicalTrackConfig.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ClinicalTrackConfig.java rename to src/main/java/org/cbioportal/web/parameter/ClinicalTrackConfig.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/CoExpressionFilter.java b/src/main/java/org/cbioportal/web/parameter/CoExpressionFilter.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/parameter/CoExpressionFilter.java rename to src/main/java/org/cbioportal/web/parameter/CoExpressionFilter.java index 9f5f06894c4..0bc03751278 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/CoExpressionFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/CoExpressionFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; public class CoExpressionFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/CopyNumberCountIdentifier.java b/src/main/java/org/cbioportal/web/parameter/CopyNumberCountIdentifier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/CopyNumberCountIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/CopyNumberCountIdentifier.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/CustomGeneList.java b/src/main/java/org/cbioportal/web/parameter/CustomGeneList.java similarity index 90% rename from web/src/main/java/org/cbioportal/web/parameter/CustomGeneList.java rename to src/main/java/org/cbioportal/web/parameter/CustomGeneList.java index 5dd85d5d964..ae762277a51 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/CustomGeneList.java +++ b/src/main/java/org/cbioportal/web/parameter/CustomGeneList.java @@ -3,10 +3,9 @@ import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.databind.ObjectMapper; +import org.cbioportal.utils.removeme.Session; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import org.cbioportal.session_service.domain.Session; -import org.cbioportal.session_service.domain.SessionType; import java.io.IOException; diff --git a/web/src/main/java/org/cbioportal/web/parameter/CustomGeneListData.java b/src/main/java/org/cbioportal/web/parameter/CustomGeneListData.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/CustomGeneListData.java rename to src/main/java/org/cbioportal/web/parameter/CustomGeneListData.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/DataBinCountFilter.java b/src/main/java/org/cbioportal/web/parameter/DataBinCountFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/DataBinCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/DataBinCountFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/DataBinFilter.java b/src/main/java/org/cbioportal/web/parameter/DataBinFilter.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/parameter/DataBinFilter.java rename to src/main/java/org/cbioportal/web/parameter/DataBinFilter.java index a5d23c0b964..4011b5547a4 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/DataBinFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/DataBinFilter.java @@ -4,7 +4,7 @@ import java.math.BigDecimal; import java.util.List; -import javax.validation.constraints.AssertTrue; +import jakarta.validation.constraints.AssertTrue; import org.springframework.validation.annotation.Validated; @Validated @@ -85,11 +85,11 @@ private boolean rangeIsCoveringCustomBins() { if (this.customBins != null && (start != null || end != null)) { boolean valid = true; for (BigDecimal bin : this.customBins) { - if (start != null && start.compareTo(bin) == 1) { + if (start != null && start.compareTo(bin) > 0) { valid = false; break; } - if (end != null && end.compareTo(bin) == -1) { + if (end != null && end.compareTo(bin) < 0) { valid = false; break; } diff --git a/web/src/main/java/org/cbioportal/web/parameter/DataBinMethod.java b/src/main/java/org/cbioportal/web/parameter/DataBinMethod.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/DataBinMethod.java rename to src/main/java/org/cbioportal/web/parameter/DataBinMethod.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/DataFilter.java b/src/main/java/org/cbioportal/web/parameter/DataFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/DataFilter.java rename to src/main/java/org/cbioportal/web/parameter/DataFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/DataFilterValue.java b/src/main/java/org/cbioportal/web/parameter/DataFilterValue.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/DataFilterValue.java rename to src/main/java/org/cbioportal/web/parameter/DataFilterValue.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/Direction.java b/src/main/java/org/cbioportal/web/parameter/Direction.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/Direction.java rename to src/main/java/org/cbioportal/web/parameter/Direction.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberEventType.java b/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberEventType.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberEventType.java rename to src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberEventType.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberFilter.java b/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberFilter.java similarity index 92% rename from web/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberFilter.java rename to src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberFilter.java index ad75c81172a..859575119c4 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; public class DiscreteCopyNumberFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/EnrichmentFilter.java b/src/main/java/org/cbioportal/web/parameter/EnrichmentFilter.java similarity index 86% rename from web/src/main/java/org/cbioportal/web/parameter/EnrichmentFilter.java rename to src/main/java/org/cbioportal/web/parameter/EnrichmentFilter.java index 9fd10cd4033..571f086a951 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/EnrichmentFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/EnrichmentFilter.java @@ -1,7 +1,8 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.NotNull; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.NotNull; +import jakarta.validation.constraints.Size; + import java.util.List; public class EnrichmentFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/GeneFilter.java b/src/main/java/org/cbioportal/web/parameter/GeneFilter.java similarity index 98% rename from web/src/main/java/org/cbioportal/web/parameter/GeneFilter.java rename to src/main/java/org/cbioportal/web/parameter/GeneFilter.java index dc650928df5..a956f5a63c7 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/GeneFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/GeneFilter.java @@ -5,8 +5,8 @@ import java.util.regex.Matcher; import java.util.regex.Pattern; import java.util.stream.Collectors; -import javax.validation.constraints.AssertTrue; +import jakarta.validation.constraints.AssertTrue; import org.apache.commons.collections4.CollectionUtils; import org.cbioportal.model.CNA; import com.fasterxml.jackson.annotation.JsonIgnore; diff --git a/web/src/main/java/org/cbioportal/web/parameter/GeneIdType.java b/src/main/java/org/cbioportal/web/parameter/GeneIdType.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GeneIdType.java rename to src/main/java/org/cbioportal/web/parameter/GeneIdType.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenePanelDataFilter.java b/src/main/java/org/cbioportal/web/parameter/GenePanelDataFilter.java similarity index 88% rename from web/src/main/java/org/cbioportal/web/parameter/GenePanelDataFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenePanelDataFilter.java index a2337f14349..9b28bf8c510 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/GenePanelDataFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/GenePanelDataFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; public class GenePanelDataFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenePanelDataMultipleStudyFilter.java b/src/main/java/org/cbioportal/web/parameter/GenePanelDataMultipleStudyFilter.java similarity index 92% rename from web/src/main/java/org/cbioportal/web/parameter/GenePanelDataMultipleStudyFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenePanelDataMultipleStudyFilter.java index 5f8b7a741ef..f4e70978c6b 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/GenePanelDataMultipleStudyFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/GenePanelDataMultipleStudyFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinCountFilter.java b/src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinCountFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinCountFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinFilter.java b/src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenericAssayDataBinFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataCountFilter.java b/src/main/java/org/cbioportal/web/parameter/GenericAssayDataCountFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenericAssayDataCountFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataFilter.java b/src/main/java/org/cbioportal/web/parameter/GenericAssayDataFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenericAssayDataFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataMultipleStudyFilter.java b/src/main/java/org/cbioportal/web/parameter/GenericAssayDataMultipleStudyFilter.java similarity index 94% rename from web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataMultipleStudyFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenericAssayDataMultipleStudyFilter.java index 080c4870a81..35a1afb390f 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayDataMultipleStudyFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/GenericAssayDataMultipleStudyFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayFilter.java b/src/main/java/org/cbioportal/web/parameter/GenericAssayFilter.java similarity index 91% rename from web/src/main/java/org/cbioportal/web/parameter/GenericAssayFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenericAssayFilter.java index 009dca1634f..c0f4a75998c 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/GenericAssayFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; public class GenericAssayFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayMetaFilter.java b/src/main/java/org/cbioportal/web/parameter/GenericAssayMetaFilter.java similarity index 95% rename from web/src/main/java/org/cbioportal/web/parameter/GenericAssayMetaFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenericAssayMetaFilter.java index f0d69e81a2a..f877912b2a2 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/GenericAssayMetaFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/GenericAssayMetaFilter.java @@ -1,6 +1,6 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.Size; import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenesetDataFilterCriteria.java b/src/main/java/org/cbioportal/web/parameter/GenesetDataFilterCriteria.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenesetDataFilterCriteria.java rename to src/main/java/org/cbioportal/web/parameter/GenesetDataFilterCriteria.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenomicDataBinCountFilter.java b/src/main/java/org/cbioportal/web/parameter/GenomicDataBinCountFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenomicDataBinCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenomicDataBinCountFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenomicDataBinFilter.java b/src/main/java/org/cbioportal/web/parameter/GenomicDataBinFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenomicDataBinFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenomicDataBinFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenomicDataCountFilter.java b/src/main/java/org/cbioportal/web/parameter/GenomicDataCountFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenomicDataCountFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenomicDataCountFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/GenomicDataFilter.java b/src/main/java/org/cbioportal/web/parameter/GenomicDataFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/GenomicDataFilter.java rename to src/main/java/org/cbioportal/web/parameter/GenomicDataFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/Group.java b/src/main/java/org/cbioportal/web/parameter/Group.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/parameter/Group.java rename to src/main/java/org/cbioportal/web/parameter/Group.java index bb4183525f4..ae9e8c184e9 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/Group.java +++ b/src/main/java/org/cbioportal/web/parameter/Group.java @@ -1,9 +1,10 @@ package org.cbioportal.web.parameter; +import jakarta.validation.constraints.Size; + import java.io.Serializable; import java.util.List; -import javax.validation.constraints.Size; public class Group implements Serializable { diff --git a/web/src/main/java/org/cbioportal/web/parameter/GroupFilter.java b/src/main/java/org/cbioportal/web/parameter/GroupFilter.java similarity index 82% rename from web/src/main/java/org/cbioportal/web/parameter/GroupFilter.java rename to src/main/java/org/cbioportal/web/parameter/GroupFilter.java index 45679ace77a..8cfcba4859b 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/GroupFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/GroupFilter.java @@ -1,10 +1,11 @@ package org.cbioportal.web.parameter; +import jakarta.validation.Valid; +import jakarta.validation.constraints.Size; + import java.io.Serializable; import java.util.List; -import javax.validation.Valid; -import javax.validation.constraints.Size; public class GroupFilter implements Serializable { diff --git a/web/src/main/java/org/cbioportal/web/parameter/HeaderKeyConstants.java b/src/main/java/org/cbioportal/web/parameter/HeaderKeyConstants.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/HeaderKeyConstants.java rename to src/main/java/org/cbioportal/web/parameter/HeaderKeyConstants.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/MolecularDataFilter.java b/src/main/java/org/cbioportal/web/parameter/MolecularDataFilter.java similarity index 91% rename from web/src/main/java/org/cbioportal/web/parameter/MolecularDataFilter.java rename to src/main/java/org/cbioportal/web/parameter/MolecularDataFilter.java index e340c9aa06d..d8765076905 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/MolecularDataFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/MolecularDataFilter.java @@ -1,7 +1,8 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; + import java.util.List; public class MolecularDataFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/MolecularDataMultipleStudyFilter.java b/src/main/java/org/cbioportal/web/parameter/MolecularDataMultipleStudyFilter.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/parameter/MolecularDataMultipleStudyFilter.java rename to src/main/java/org/cbioportal/web/parameter/MolecularDataMultipleStudyFilter.java index 537d7d28015..3527ca674c1 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/MolecularDataMultipleStudyFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/MolecularDataMultipleStudyFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupAndAlterationTypeFilter.java b/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupAndAlterationTypeFilter.java similarity index 88% rename from web/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupAndAlterationTypeFilter.java rename to src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupAndAlterationTypeFilter.java index 0c643ae04e2..a8d991ca95e 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupAndAlterationTypeFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupAndAlterationTypeFilter.java @@ -1,18 +1,18 @@ package org.cbioportal.web.parameter; -import io.swagger.annotations.ApiModelProperty; +import io.swagger.v3.oas.annotations.media.Schema; import org.cbioportal.model.AlterationFilter; import java.util.List; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.Size; public class MolecularProfileCasesGroupAndAlterationTypeFilter { private AlterationFilter alterationEventTypes; @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @ApiModelProperty(required = true) + @Schema private List molecularProfileCasesGroupFilter; diff --git a/web/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupFilter.java b/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupFilter.java similarity index 95% rename from web/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupFilter.java rename to src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupFilter.java index cd5656ef6da..decdc4748e5 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/MolecularProfileCasesGroupFilter.java @@ -4,8 +4,8 @@ import java.util.HashSet; import java.util.List; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.Size; import org.cbioportal.model.MolecularProfileCaseIdentifier; public class MolecularProfileCasesGroupFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/MolecularProfileFilter.java b/src/main/java/org/cbioportal/web/parameter/MolecularProfileFilter.java similarity index 90% rename from web/src/main/java/org/cbioportal/web/parameter/MolecularProfileFilter.java rename to src/main/java/org/cbioportal/web/parameter/MolecularProfileFilter.java index 27e439a92ae..bc5a460dc9b 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/MolecularProfileFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/MolecularProfileFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; import java.io.Serializable; import java.util.Set; diff --git a/src/main/java/org/cbioportal/web/parameter/MutationFilter.java b/src/main/java/org/cbioportal/web/parameter/MutationFilter.java new file mode 100644 index 00000000000..f9d10a3fccd --- /dev/null +++ b/src/main/java/org/cbioportal/web/parameter/MutationFilter.java @@ -0,0 +1,43 @@ +package org.cbioportal.web.parameter; + +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; +import java.util.List; + +public class MutationFilter { + + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + private List sampleIds; + private String sampleListId; + @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) + private List entrezGeneIds; + + @AssertTrue + private boolean isEitherSampleListIdOrSampleIdsPresent() { + return sampleListId != null ^ sampleIds != null; + } + + public List getSampleIds() { + return sampleIds; + } + + public void setSampleIds(List sampleIds) { + this.sampleIds = sampleIds; + } + + public String getSampleListId() { + return sampleListId; + } + + public void setSampleListId(String sampleListId) { + this.sampleListId = sampleListId; + } + + public List getEntrezGeneIds() { + return entrezGeneIds; + } + + public void setEntrezGeneIds(List entrezGeneIds) { + this.entrezGeneIds = entrezGeneIds; + } +} diff --git a/web/src/main/java/org/cbioportal/web/parameter/MutationMultipleStudyFilter.java b/src/main/java/org/cbioportal/web/parameter/MutationMultipleStudyFilter.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/parameter/MutationMultipleStudyFilter.java rename to src/main/java/org/cbioportal/web/parameter/MutationMultipleStudyFilter.java index b59f67dfaaf..c487cf754fa 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/MutationMultipleStudyFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/MutationMultipleStudyFilter.java @@ -1,7 +1,8 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; + import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/MutationPositionIdentifier.java b/src/main/java/org/cbioportal/web/parameter/MutationPositionIdentifier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/MutationPositionIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/MutationPositionIdentifier.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/MutationSpectrumFilter.java b/src/main/java/org/cbioportal/web/parameter/MutationSpectrumFilter.java similarity index 88% rename from web/src/main/java/org/cbioportal/web/parameter/MutationSpectrumFilter.java rename to src/main/java/org/cbioportal/web/parameter/MutationSpectrumFilter.java index 08cfbe3c05d..8d97f0b85f8 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/MutationSpectrumFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/MutationSpectrumFilter.java @@ -1,7 +1,7 @@ package org.cbioportal.web.parameter; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import java.util.List; public class MutationSpectrumFilter { diff --git a/web/src/main/java/org/cbioportal/web/parameter/PageSettings.java b/src/main/java/org/cbioportal/web/parameter/PageSettings.java similarity index 90% rename from web/src/main/java/org/cbioportal/web/parameter/PageSettings.java rename to src/main/java/org/cbioportal/web/parameter/PageSettings.java index 4d7b37ab00f..0d9c32dfe00 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/PageSettings.java +++ b/src/main/java/org/cbioportal/web/parameter/PageSettings.java @@ -2,10 +2,9 @@ import java.io.IOException; +import org.cbioportal.utils.removeme.Session; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import org.cbioportal.session_service.domain.Session; -import org.cbioportal.session_service.domain.SessionType; import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; diff --git a/web/src/main/java/org/cbioportal/web/parameter/PageSettingsData.java b/src/main/java/org/cbioportal/web/parameter/PageSettingsData.java similarity index 97% rename from web/src/main/java/org/cbioportal/web/parameter/PageSettingsData.java rename to src/main/java/org/cbioportal/web/parameter/PageSettingsData.java index 8fb217a7fdb..2a22e333bf8 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/PageSettingsData.java +++ b/src/main/java/org/cbioportal/web/parameter/PageSettingsData.java @@ -3,7 +3,7 @@ import java.io.Serializable; import java.util.Set; -import javax.validation.constraints.NotNull; +import jakarta.validation.constraints.NotNull; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; import com.fasterxml.jackson.annotation.JsonInclude; diff --git a/web/src/main/java/org/cbioportal/web/parameter/PageSettingsIdentifier.java b/src/main/java/org/cbioportal/web/parameter/PageSettingsIdentifier.java similarity index 87% rename from web/src/main/java/org/cbioportal/web/parameter/PageSettingsIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/PageSettingsIdentifier.java index 9f2e8cdfc64..6dbd479e2ad 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/PageSettingsIdentifier.java +++ b/src/main/java/org/cbioportal/web/parameter/PageSettingsIdentifier.java @@ -3,8 +3,8 @@ import java.io.Serializable; import java.util.Set; -import javax.validation.constraints.NotNull; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.NotNull; +import jakarta.validation.constraints.Size; public class PageSettingsIdentifier implements Serializable { diff --git a/web/src/main/java/org/cbioportal/web/parameter/PagingConstants.java b/src/main/java/org/cbioportal/web/parameter/PagingConstants.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/PagingConstants.java rename to src/main/java/org/cbioportal/web/parameter/PagingConstants.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/PatientFilter.java b/src/main/java/org/cbioportal/web/parameter/PatientFilter.java similarity index 91% rename from web/src/main/java/org/cbioportal/web/parameter/PatientFilter.java rename to src/main/java/org/cbioportal/web/parameter/PatientFilter.java index 8155bb7da1d..7f69fb048de 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/PatientFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/PatientFilter.java @@ -2,8 +2,8 @@ import java.io.Serializable; import java.util.List; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; public class PatientFilter implements Serializable { diff --git a/web/src/main/java/org/cbioportal/web/parameter/PatientIdentifier.java b/src/main/java/org/cbioportal/web/parameter/PatientIdentifier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/PatientIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/PatientIdentifier.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/Projection.java b/src/main/java/org/cbioportal/web/parameter/Projection.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/Projection.java rename to src/main/java/org/cbioportal/web/parameter/Projection.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/ResultsPageSettings.java b/src/main/java/org/cbioportal/web/parameter/ResultsPageSettings.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/ResultsPageSettings.java rename to src/main/java/org/cbioportal/web/parameter/ResultsPageSettings.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/SampleFilter.java b/src/main/java/org/cbioportal/web/parameter/SampleFilter.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/parameter/SampleFilter.java rename to src/main/java/org/cbioportal/web/parameter/SampleFilter.java index ed4957be3ab..701dc6181ac 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/SampleFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/SampleFilter.java @@ -1,9 +1,9 @@ package org.cbioportal.web.parameter; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import org.cbioportal.web.SampleController; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; import java.util.List; import java.io.Serializable; diff --git a/web/src/main/java/org/cbioportal/web/parameter/SampleIdentifier.java b/src/main/java/org/cbioportal/web/parameter/SampleIdentifier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/SampleIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/SampleIdentifier.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/SampleMolecularIdentifier.java b/src/main/java/org/cbioportal/web/parameter/SampleMolecularIdentifier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/SampleMolecularIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/SampleMolecularIdentifier.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/SessionPage.java b/src/main/java/org/cbioportal/web/parameter/SessionPage.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/SessionPage.java rename to src/main/java/org/cbioportal/web/parameter/SessionPage.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/StructuralVariantFilter.java b/src/main/java/org/cbioportal/web/parameter/StructuralVariantFilter.java similarity index 95% rename from web/src/main/java/org/cbioportal/web/parameter/StructuralVariantFilter.java rename to src/main/java/org/cbioportal/web/parameter/StructuralVariantFilter.java index b79a29a9509..7d3c831196c 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/StructuralVariantFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/StructuralVariantFilter.java @@ -23,10 +23,9 @@ package org.cbioportal.web.parameter; -import javax.validation.Valid; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; - +import jakarta.validation.Valid; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import org.apache.commons.collections4.CollectionUtils; import org.cbioportal.model.StructuralVariantQuery; diff --git a/web/src/main/java/org/cbioportal/web/parameter/StudyPageSettings.java b/src/main/java/org/cbioportal/web/parameter/StudyPageSettings.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/StudyPageSettings.java rename to src/main/java/org/cbioportal/web/parameter/StudyPageSettings.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/StudyViewFilter.java b/src/main/java/org/cbioportal/web/parameter/StudyViewFilter.java similarity index 98% rename from web/src/main/java/org/cbioportal/web/parameter/StudyViewFilter.java rename to src/main/java/org/cbioportal/web/parameter/StudyViewFilter.java index 6a9e8c9b5a0..b7354ed9b6c 100644 --- a/web/src/main/java/org/cbioportal/web/parameter/StudyViewFilter.java +++ b/src/main/java/org/cbioportal/web/parameter/StudyViewFilter.java @@ -4,13 +4,13 @@ import java.util.List; import java.util.Objects; -import javax.validation.Valid; -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; import com.fasterxml.jackson.annotation.JsonInclude; import com.fasterxml.jackson.annotation.JsonInclude.Include; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; +import jakarta.validation.Valid; +import jakarta.validation.constraints.AssertTrue; +import jakarta.validation.constraints.Size; import org.cbioportal.model.AlterationFilter; import org.cbioportal.model.GeneFilter; import org.cbioportal.model.StudyViewStructuralVariantFilter; diff --git a/web/src/main/java/org/cbioportal/web/parameter/VariantCountIdentifier.java b/src/main/java/org/cbioportal/web/parameter/VariantCountIdentifier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/VariantCountIdentifier.java rename to src/main/java/org/cbioportal/web/parameter/VariantCountIdentifier.java diff --git a/src/main/java/org/cbioportal/web/parameter/VirtualStudy.java b/src/main/java/org/cbioportal/web/parameter/VirtualStudy.java new file mode 100644 index 00000000000..d5613860982 --- /dev/null +++ b/src/main/java/org/cbioportal/web/parameter/VirtualStudy.java @@ -0,0 +1,46 @@ +package org.cbioportal.web.parameter; + +import java.io.IOException; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.fasterxml.jackson.annotation.JsonIgnoreProperties; +import com.fasterxml.jackson.databind.ObjectMapper; +import org.cbioportal.utils.removeme.Session; + +@JsonIgnoreProperties(ignoreUnknown = true) +public class VirtualStudy extends Session { + + private final Logger LOG = LoggerFactory.getLogger(VirtualStudy.class); + private VirtualStudyData data; + + @Override + public void setData(Object data) { + ObjectMapper mapper = new ObjectMapper(); + try { + this.data = mapper.readValue(mapper.writeValueAsString(data), VirtualStudyData.class); + } catch (IOException e) { + LOG.error("Error occurred", e); + } + } + + @Override + public VirtualStudyData getData() { + return data; + } + + @JsonIgnore + @Override + public String getSource() { + return super.getSource(); + } + + @JsonIgnore + @Override + public SessionType getType() { + return super.getType(); + } + +} diff --git a/web/src/main/java/org/cbioportal/web/parameter/VirtualStudyData.java b/src/main/java/org/cbioportal/web/parameter/VirtualStudyData.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/VirtualStudyData.java rename to src/main/java/org/cbioportal/web/parameter/VirtualStudyData.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/VirtualStudySamples.java b/src/main/java/org/cbioportal/web/parameter/VirtualStudySamples.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/VirtualStudySamples.java rename to src/main/java/org/cbioportal/web/parameter/VirtualStudySamples.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/filter/AndedPatientTreatmentFilters.java b/src/main/java/org/cbioportal/web/parameter/filter/AndedPatientTreatmentFilters.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/filter/AndedPatientTreatmentFilters.java rename to src/main/java/org/cbioportal/web/parameter/filter/AndedPatientTreatmentFilters.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/filter/AndedSampleTreatmentFilters.java b/src/main/java/org/cbioportal/web/parameter/filter/AndedSampleTreatmentFilters.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/filter/AndedSampleTreatmentFilters.java rename to src/main/java/org/cbioportal/web/parameter/filter/AndedSampleTreatmentFilters.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/filter/OredPatientTreatmentFilters.java b/src/main/java/org/cbioportal/web/parameter/filter/OredPatientTreatmentFilters.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/filter/OredPatientTreatmentFilters.java rename to src/main/java/org/cbioportal/web/parameter/filter/OredPatientTreatmentFilters.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/filter/OredSampleTreatmentFilters.java b/src/main/java/org/cbioportal/web/parameter/filter/OredSampleTreatmentFilters.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/filter/OredSampleTreatmentFilters.java rename to src/main/java/org/cbioportal/web/parameter/filter/OredSampleTreatmentFilters.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/filter/PatientTreatmentFilter.java b/src/main/java/org/cbioportal/web/parameter/filter/PatientTreatmentFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/filter/PatientTreatmentFilter.java rename to src/main/java/org/cbioportal/web/parameter/filter/PatientTreatmentFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/filter/SampleTreatmentFilter.java b/src/main/java/org/cbioportal/web/parameter/filter/SampleTreatmentFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/filter/SampleTreatmentFilter.java rename to src/main/java/org/cbioportal/web/parameter/filter/SampleTreatmentFilter.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/CancerTypeSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/CancerTypeSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/CancerTypeSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/CancerTypeSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/ClinicalAttributeSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/ClinicalAttributeSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/ClinicalAttributeSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/ClinicalAttributeSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/ClinicalDataSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/ClinicalDataSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/ClinicalDataSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/ClinicalDataSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/ClinicalEventSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/ClinicalEventSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/ClinicalEventSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/ClinicalEventSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/CopyNumberSegmentSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/CopyNumberSegmentSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/CopyNumberSegmentSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/CopyNumberSegmentSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/DiscreteCopyNumberSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/DiscreteCopyNumberSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/DiscreteCopyNumberSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/DiscreteCopyNumberSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/GenePanelSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/GenePanelSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/GenePanelSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/GenePanelSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/GeneSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/GeneSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/GeneSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/GeneSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/MolecularProfileSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/MolecularProfileSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/MolecularProfileSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/MolecularProfileSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/MutationSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/MutationSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/MutationSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/MutationSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/PatientSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/PatientSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/PatientSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/PatientSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/ResourceDataSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/ResourceDataSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/ResourceDataSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/ResourceDataSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/ResourceDefinitionSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/ResourceDefinitionSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/ResourceDefinitionSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/ResourceDefinitionSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/SampleListSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/SampleListSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/SampleListSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/SampleListSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/SampleSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/SampleSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/SampleSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/SampleSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/SignificantCopyNumberRegionSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/SignificantCopyNumberRegionSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/SignificantCopyNumberRegionSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/SignificantCopyNumberRegionSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/SignificantlyMutatedGeneSortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/SignificantlyMutatedGeneSortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/SignificantlyMutatedGeneSortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/SignificantlyMutatedGeneSortBy.java diff --git a/web/src/main/java/org/cbioportal/web/parameter/sort/StudySortBy.java b/src/main/java/org/cbioportal/web/parameter/sort/StudySortBy.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/parameter/sort/StudySortBy.java rename to src/main/java/org/cbioportal/web/parameter/sort/StudySortBy.java diff --git a/web/src/main/java/org/cbioportal/web/studyview/CustomDataController.java b/src/main/java/org/cbioportal/web/studyview/CustomDataController.java similarity index 81% rename from web/src/main/java/org/cbioportal/web/studyview/CustomDataController.java rename to src/main/java/org/cbioportal/web/studyview/CustomDataController.java index 85e14eb5baa..9df5f7acf14 100644 --- a/web/src/main/java/org/cbioportal/web/studyview/CustomDataController.java +++ b/src/main/java/org/cbioportal/web/studyview/CustomDataController.java @@ -1,22 +1,22 @@ package org.cbioportal.web.studyview; -import java.util.ArrayList; -import java.util.Collection; -import java.util.List; -import java.util.Map; -import java.util.function.Function; -import java.util.stream.Collectors; - -import javax.validation.Valid; +import io.swagger.v3.oas.annotations.Operation; +import io.swagger.v3.oas.annotations.Parameter; +import io.swagger.v3.oas.annotations.media.ArraySchema; +import io.swagger.v3.oas.annotations.media.Content; +import io.swagger.v3.oas.annotations.media.Schema; +import io.swagger.v3.oas.annotations.responses.ApiResponse; +import io.swagger.v3.oas.annotations.tags.Tag; +import jakarta.validation.Valid; import org.cbioportal.model.ClinicalDataCountItem; import org.cbioportal.model.Patient; import org.cbioportal.service.CustomDataService; import org.cbioportal.service.PatientService; +import org.cbioportal.service.util.CustomDataSession; import org.cbioportal.web.config.annotation.InternalApi; import org.cbioportal.web.parameter.ClinicalDataCountFilter; import org.cbioportal.web.parameter.ClinicalDataFilter; -import org.cbioportal.service.util.CustomDataSession; import org.cbioportal.web.parameter.SampleIdentifier; import org.cbioportal.web.parameter.StudyViewFilter; import org.cbioportal.web.util.StudyViewFilterApplier; @@ -33,15 +33,18 @@ import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RestController; -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import springfox.documentation.annotations.ApiIgnore; +import java.util.ArrayList; +import java.util.Collection; +import java.util.List; +import java.util.Map; +import java.util.function.Function; +import java.util.stream.Collectors; @InternalApi -@RestController +@RestController() +@RequestMapping("/api") @Validated -@Api(tags = "Study View", description = " ") +@Tag(name = "Study View", description = " ") public class CustomDataController { @Autowired @@ -55,13 +58,15 @@ public class CustomDataController { @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") @RequestMapping(value = "/custom-data-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch custom data counts by study view filter") + @Operation(description = "Fetch custom data counts by study view filter") + @ApiResponse(responseCode = "200", description = "OK", + content = @Content(array = @ArraySchema(schema = @Schema(implementation = ClinicalDataCountItem.class)))) public ResponseEntity> fetchCustomDataCounts( - @ApiParam(required = true, value = "Custom data count filter") @Valid @RequestBody(required = false) ClinicalDataCountFilter clinicalDataCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui + @Parameter(required = true, description = "Custom data count filter") @Valid @RequestBody(required = false) ClinicalDataCountFilter clinicalDataCountFilter, + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui // interface @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui + @Parameter(hidden = true) // prevent reference to this attribute in the swagger-ui // interface. this attribute is needed for the // @PreAuthorize tag above. @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataCountFilter") ClinicalDataCountFilter interceptedClinicalDataCountFilter) { diff --git a/web/src/main/java/org/cbioportal/web/util/BinningData.java b/src/main/java/org/cbioportal/web/util/BinningData.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/BinningData.java rename to src/main/java/org/cbioportal/web/util/BinningData.java diff --git a/web/src/main/java/org/cbioportal/web/util/BinningIds.java b/src/main/java/org/cbioportal/web/util/BinningIds.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/BinningIds.java rename to src/main/java/org/cbioportal/web/util/BinningIds.java diff --git a/web/src/main/java/org/cbioportal/web/util/ClinicalDataBinUtil.java b/src/main/java/org/cbioportal/web/util/ClinicalDataBinUtil.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/ClinicalDataBinUtil.java rename to src/main/java/org/cbioportal/web/util/ClinicalDataBinUtil.java diff --git a/web/src/main/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtil.java b/src/main/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtil.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtil.java rename to src/main/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtil.java diff --git a/web/src/main/java/org/cbioportal/web/util/ClinicalDataEqualityFilterApplier.java b/src/main/java/org/cbioportal/web/util/ClinicalDataEqualityFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/ClinicalDataEqualityFilterApplier.java rename to src/main/java/org/cbioportal/web/util/ClinicalDataEqualityFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/ClinicalDataFetcher.java b/src/main/java/org/cbioportal/web/util/ClinicalDataFetcher.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/ClinicalDataFetcher.java rename to src/main/java/org/cbioportal/web/util/ClinicalDataFetcher.java diff --git a/web/src/main/java/org/cbioportal/web/util/ClinicalDataFilterApplier.java b/src/main/java/org/cbioportal/web/util/ClinicalDataFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/ClinicalDataFilterApplier.java rename to src/main/java/org/cbioportal/web/util/ClinicalDataFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/ClinicalDataIntervalFilterApplier.java b/src/main/java/org/cbioportal/web/util/ClinicalDataIntervalFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/ClinicalDataIntervalFilterApplier.java rename to src/main/java/org/cbioportal/web/util/ClinicalDataIntervalFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/CustomDataFilterApplier.java b/src/main/java/org/cbioportal/web/util/CustomDataFilterApplier.java similarity index 98% rename from web/src/main/java/org/cbioportal/web/util/CustomDataFilterApplier.java rename to src/main/java/org/cbioportal/web/util/CustomDataFilterApplier.java index 447a0e5d691..bf4985f15fb 100644 --- a/web/src/main/java/org/cbioportal/web/util/CustomDataFilterApplier.java +++ b/src/main/java/org/cbioportal/web/util/CustomDataFilterApplier.java @@ -1,5 +1,8 @@ package org.cbioportal.web.util; +import static org.cbioportal.utils.removeme.Session.*; + + import org.apache.commons.collections4.map.MultiKeyMap; import org.cbioportal.service.CustomDataService; import org.cbioportal.service.util.CustomDataSession; diff --git a/web/src/main/java/org/cbioportal/web/util/CustomDatatype.java b/src/main/java/org/cbioportal/web/util/CustomDatatype.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/CustomDatatype.java rename to src/main/java/org/cbioportal/web/util/CustomDatatype.java diff --git a/web/src/main/java/org/cbioportal/web/util/DataBinHelper.java b/src/main/java/org/cbioportal/web/util/DataBinHelper.java similarity index 97% rename from web/src/main/java/org/cbioportal/web/util/DataBinHelper.java rename to src/main/java/org/cbioportal/web/util/DataBinHelper.java index 803d98f98b3..6e50f437f5d 100644 --- a/web/src/main/java/org/cbioportal/web/util/DataBinHelper.java +++ b/src/main/java/org/cbioportal/web/util/DataBinHelper.java @@ -1,9 +1,8 @@ package org.cbioportal.web.util; -import com.google.common.collect.Range; import org.cbioportal.model.DataBin; import org.springframework.stereotype.Component; - +import com.google.common.collect.Range; import java.math.BigDecimal; import java.math.RoundingMode; import java.util.*; @@ -23,7 +22,7 @@ public DataBin calcUpperOutlierBin(List gteValues, List // no special outlier min = null; value = ">"; - } else if (gtMin == null || (gteMin != null && gteMin.compareTo(gtMin) == -1)) { + } else if (gtMin == null || (gteMin != null && gteMin.compareTo(gtMin) < 0)) { min = gteMin; value = ">="; } else { @@ -49,7 +48,7 @@ public DataBin calcLowerOutlierBin(List lteValues, List if (ltMax == null && lteMax == null) { max = null; specialValue = "<="; - } else if (lteMax == null || (ltMax != null && lteMax.compareTo(ltMax) == -1)) { + } else if (lteMax == null || (ltMax != null && lteMax.compareTo(ltMax) < 0)) { max = ltMax; specialValue = "<"; } else { @@ -115,12 +114,12 @@ public Range calcBoxRange(List sortedValues) { // we simply set min and max to the same value minValue = sortedValues.get(0); maxValue = minValue; - } else if (q3.compareTo(new BigDecimal("0.001")) != -1 && q3.compareTo(new BigDecimal("1")) == -1) { + } else if (q3.compareTo(new BigDecimal("0.001")) != -1 && q3.compareTo(new BigDecimal("1")) < 0) { //maxValue = Number((q3 + iqr * 1.5).toFixed(3)); //minValue = Number((q1 - iqr * 1.5).toFixed(3)); maxValue = q3upperBoundry.setScale(3, BigDecimal.ROUND_HALF_UP); minValue = q1LowerBoundry.setScale(3, BigDecimal.ROUND_HALF_UP); - } else if (q3.compareTo(BigDecimal.valueOf(0.001)) == -1) { + } else if (q3.compareTo(BigDecimal.valueOf(0.001)) < 0) { // get IQR for very small number(<0.001) maxValue = q3upperBoundry; minValue = q1LowerBoundry; @@ -129,11 +128,11 @@ public Range calcBoxRange(List sortedValues) { minValue = q1LowerBoundry.setScale(1, RoundingMode.FLOOR); } - if (minValue.compareTo(sortedValues.get(0)) == -1) { + if (minValue.compareTo(sortedValues.get(0)) < 0) { minValue = sortedValues.get(0); } - if (maxValue.compareTo(sortedValues.get(sortedValues.size() - 1)) == 1) { + if (maxValue.compareTo(sortedValues.get(sortedValues.size() - 1)) > 0) { maxValue = sortedValues.get(sortedValues.size() - 1); } @@ -152,7 +151,7 @@ public Range calcInterquartileRangeApproximation(List so if (q1.compareTo(q3) == 0 && max.compareTo(q3) == 0) { // filter out max and try again iqr = this.calcInterquartileRangeApproximation( - sortedValues.stream().filter(d -> d.compareTo(max) == -1).collect(Collectors.toList())); + sortedValues.stream().filter(d -> d.compareTo(max) < 0).collect(Collectors.toList())); } // if range is still empty use the original q1 and q3 values @@ -218,7 +217,7 @@ public BigDecimal valueCloseToQ3(List sortedValues) { public List filterIntervals(List intervals, BigDecimal lowerOutlier, BigDecimal upperOutlier) { // remove values that fall outside the lower and upper outlier limits return intervals.stream() - .filter(d -> (lowerOutlier == null || d.compareTo(lowerOutlier) == 1 ) && (upperOutlier == null || d.compareTo(upperOutlier) == -1)) + .filter(d -> (lowerOutlier == null || d.compareTo(lowerOutlier) > 0 ) && (upperOutlier == null || d.compareTo(upperOutlier) < 0)) .collect(Collectors.toList()); } @@ -331,7 +330,7 @@ public boolean isNA(String value) { public boolean isSmallData(List sortedValues) { BigDecimal median = sortedValues.get((int) Math.ceil((sortedValues.size() * (1.0 / 2.0)))); - return median.compareTo(new BigDecimal("0.001")) == -1&& median.compareTo(new BigDecimal("-0.001")) == 1 && median.compareTo(new BigDecimal("0")) != 0; + return median.compareTo(new BigDecimal("0.001")) < 0 && median.compareTo(new BigDecimal("-0.001")) > 0 && median.compareTo(new BigDecimal("0")) != 0; } public String extractOperator(String value) { diff --git a/web/src/main/java/org/cbioportal/web/util/DataBinner.java b/src/main/java/org/cbioportal/web/util/DataBinner.java similarity index 99% rename from web/src/main/java/org/cbioportal/web/util/DataBinner.java rename to src/main/java/org/cbioportal/web/util/DataBinner.java index e478bd61aa4..6002f2df9b6 100644 --- a/web/src/main/java/org/cbioportal/web/util/DataBinner.java +++ b/src/main/java/org/cbioportal/web/util/DataBinner.java @@ -3,8 +3,6 @@ import com.google.common.collect.Range; import org.apache.commons.lang3.math.NumberUtils; import org.cbioportal.model.Binnable; -import org.cbioportal.model.ClinicalData; -import org.cbioportal.model.ClinicalData; import org.cbioportal.model.DataBin; import org.cbioportal.web.parameter.BinsGeneratorConfig; import org.cbioportal.web.parameter.ClinicalDataBinFilter; @@ -17,7 +15,6 @@ import java.util.*; import java.util.function.Predicate; import java.util.stream.Collectors; -import java.util.stream.Stream; @Component public class DataBinner { diff --git a/web/src/main/java/org/cbioportal/web/util/DataFilterApplier.java b/src/main/java/org/cbioportal/web/util/DataFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/DataFilterApplier.java rename to src/main/java/org/cbioportal/web/util/DataFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/DiscreteDataBinner.java b/src/main/java/org/cbioportal/web/util/DiscreteDataBinner.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/DiscreteDataBinner.java rename to src/main/java/org/cbioportal/web/util/DiscreteDataBinner.java diff --git a/src/main/java/org/cbioportal/web/util/GoogleAnalyticsInterceptor.java b/src/main/java/org/cbioportal/web/util/GoogleAnalyticsInterceptor.java new file mode 100644 index 00000000000..540e8f2ab79 --- /dev/null +++ b/src/main/java/org/cbioportal/web/util/GoogleAnalyticsInterceptor.java @@ -0,0 +1,117 @@ +package org.cbioportal.web.util; + +import java.util.Arrays; +import java.util.concurrent.CompletableFuture; + +import jakarta.annotation.PostConstruct; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.boot.autoconfigure.condition.ConditionalOnExpression; +import org.springframework.http.*; +import org.springframework.stereotype.Component; +import org.springframework.util.LinkedMultiValueMap; +import org.springframework.web.client.RestClientException; +import org.springframework.web.client.RestTemplate; +import org.springframework.web.servlet.HandlerInterceptor; + +// TODO: Double check, needed to convert HandlerInterceptorAdapter to HandlerInterceptor +@Component +@ConditionalOnExpression("!'${google.analytics.tracking.code.api:}'.isEmpty() || !'${google.analytics.application.client.id:}'.isEmpty()") +public class GoogleAnalyticsInterceptor implements HandlerInterceptor { + + private static final Logger LOG = LoggerFactory.getLogger(GoogleAnalyticsInterceptor.class); + + @Value("${google.analytics.tracking.code.api:}") + private String trackingId; + + @Value("${google.analytics.application.client.id:}") + private String clientId; + + private static HttpHeaders defaultHeaders; + private static LinkedMultiValueMap globalURIVariables; + private boolean missingGoogleAnalyticsCredentials; + + @PostConstruct + private void initializeDefaultParams() { + + missingGoogleAnalyticsCredentials = trackingId.isEmpty() || clientId.isEmpty(); + if (missingGoogleAnalyticsCredentials) { + if (LOG.isInfoEnabled()) { + LOG.info("@PostContruct:"); + LOG.info("Google Analytics tracking id: {}", trackingId); + LOG.info("Google Analytics client id: {}", clientId); + } + return; + } + + defaultHeaders = new HttpHeaders(); + defaultHeaders.setAccept(Arrays.asList(MediaType.ALL)); + defaultHeaders.setContentType(MediaType.APPLICATION_FORM_URLENCODED); + defaultHeaders.set(HttpHeaders.USER_AGENT, "cBioPortal API Reporting/1.0 via org.cbioportal.web.util.GoogleAnalyticsInterceptor"); + + globalURIVariables = new LinkedMultiValueMap<>(); + globalURIVariables.add("v", "1"); + globalURIVariables.add("dt", "request logged by GoogleAnalyticsInterceptor"); + globalURIVariables.add("t", "pageview"); + globalURIVariables.add("tid", trackingId); + globalURIVariables.add("cid", clientId); + globalURIVariables.add("dh", "cbioportal.org"); + } + + @Override + public void afterCompletion(HttpServletRequest request, HttpServletResponse response, Object handler, Exception ex) { + + if (invalidAfterCompletionArgs(response)) { + return; + } + + CompletableFuture.runAsync(() -> { + LinkedMultiValueMap thisTasksURIVariables = new LinkedMultiValueMap<>(); + thisTasksURIVariables.putAll(globalURIVariables); + thisTasksURIVariables.add("dp", request.getRequestURI()); + HttpEntity> requestEntity = + new HttpEntity<>(thisTasksURIVariables, defaultHeaders); + try { + RestTemplate restTemplate = new RestTemplate(); + ResponseEntity responseEntity = + restTemplate.exchange("https://www.google-analytics.com/collect", HttpMethod.POST, requestEntity, String.class); + HttpStatusCode responseStatus = responseEntity.getStatusCode(); + if (responseStatus.is2xxSuccessful()) { + if (LOG.isInfoEnabled()) { + LOG.info("CompletableFuture.runAsync(): POST request successfully sent to Google Analytics: "); + LOG.info(requestEntity.toString()); + } + } + else { + if (LOG.isInfoEnabled()) { + LOG.info("CompletableFuture.runAsync(): POST request to Google Analytics failed. HTTP status code: " + + Integer.toString(responseStatus.value())); + } + } + } + catch(RestClientException e) { + e.printStackTrace(); + } + }); + } + + // TODO I think this bean should not be created when no Google analytics are configured. + private boolean invalidAfterCompletionArgs(HttpServletResponse response) { + if (missingGoogleAnalyticsCredentials || response.getHeader("referer") != null) { + if (LOG.isInfoEnabled()) { + LOG.info("afterCompletion() cannot be completed:"); + if (missingGoogleAnalyticsCredentials) { + LOG.info("Invalid Google Analytics credentials (see @PostConstruct log entry)"); + } + else { + LOG.info("Response referer is not null"); + } + } + return true; + } + return false; + } +} diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/GzippedInputStreamRequestWrapper.java b/src/main/java/org/cbioportal/web/util/GzippedInputStreamRequestWrapper.java similarity index 84% rename from core/src/main/java/org/mskcc/cbio/portal/util/GzippedInputStreamRequestWrapper.java rename to src/main/java/org/cbioportal/web/util/GzippedInputStreamRequestWrapper.java index c3c9b3f2ddf..2d8b4bc9b90 100644 --- a/core/src/main/java/org/mskcc/cbio/portal/util/GzippedInputStreamRequestWrapper.java +++ b/src/main/java/org/cbioportal/web/util/GzippedInputStreamRequestWrapper.java @@ -1,8 +1,10 @@ -package org.mskcc.cbio.portal.util; +package org.cbioportal.web.util; + +import jakarta.servlet.ReadListener; +import jakarta.servlet.ServletInputStream; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletRequestWrapper; -import javax.servlet.ServletInputStream; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletRequestWrapper; import java.io.*; import java.util.zip.GZIPInputStream; @@ -15,35 +17,6 @@ public class GzippedInputStreamRequestWrapper extends HttpServletRequestWrapper inputStream = inflate(request.getInputStream(), maxInflatedRequestBodySize); } - /** - * Inflates the compressed input stream all at once. Previously, we wrapped the compressed ServletInputStream - * stream with a GZIPInputStream, and read from that gradually. For some reason, that approach resulted in - * very long inflation times. By reading out everything from the GZIPInputStream here in the constructor, we - * managed to get down to the sub second performance you would expect with gzipping. - */ - private ByteArrayInputStream inflate(ServletInputStream requestStream, int maxInflatedRequestBodySize) throws IOException { - GZIPInputStream gzipInputStream = new GZIPInputStream(requestStream, BUFFER_SIZE); - ByteArrayOutputStream outputStream = new ByteArrayOutputStream(); - byte[] buffer = new byte[BUFFER_SIZE]; - int len; - long byteCount = 0; - - while((len = gzipInputStream.read(buffer)) > 0) { - outputStream.write(buffer, 0, len); - byteCount += BUFFER_SIZE; - - if (byteCount > maxInflatedRequestBodySize) { - throw new IOException( - "Inflated request body too large (> " - + maxInflatedRequestBodySize - + " bytes)" - ); - } - } - - return new ByteArrayInputStream(outputStream.toByteArray()); - } - @Override public ServletInputStream getInputStream() throws IOException { return new ServletInputStream() { @@ -57,6 +30,21 @@ public int readLine(byte[] b, int off, int len) throws IOException { return super.readLine(b, off, len); } + @Override + public boolean isFinished() { + return true; + } + + @Override + public boolean isReady() { + return false; + } + + @Override + public void setReadListener(ReadListener readListener) { + + } + @Override public int read(byte[] bytes) throws IOException { return super.read(bytes); @@ -79,4 +67,34 @@ public void close() throws IOException { public BufferedReader getReader() throws IOException { return new BufferedReader(new InputStreamReader(getInputStream())); } -} + + /** + * Inflates the compressed input stream all at once. Previously, we wrapped the compressed ServletInputStream + * stream with a GZIPInputStream, and read from that gradually. For some reason, that approach resulted in + * very long inflation times. By reading out everything from the GZIPInputStream here in the constructor, we + * managed to get down to the sub second performance you would expect with gzipping. + */ + private ByteArrayInputStream inflate(ServletInputStream requestStream, int maxInflatedRequestBodySize) throws IOException { + GZIPInputStream gzipInputStream = new GZIPInputStream(requestStream, BUFFER_SIZE); + ByteArrayOutputStream outputStream = new ByteArrayOutputStream(); + byte[] buffer = new byte[BUFFER_SIZE]; + int len; + long byteCount = 0; + + while((len = gzipInputStream.read(buffer)) > 0) { + outputStream.write(buffer, 0, len); + byteCount += BUFFER_SIZE; + + if (byteCount > maxInflatedRequestBodySize) { + throw new IOException( + "Inflated request body too large (> " + + maxInflatedRequestBodySize + + " bytes)" + ); + } + } + + return new ByteArrayInputStream(outputStream.toByteArray()); + } + +} \ No newline at end of file diff --git a/src/main/java/org/cbioportal/web/util/HttpRequestUtils.java b/src/main/java/org/cbioportal/web/util/HttpRequestUtils.java new file mode 100644 index 00000000000..325a5cf35bf --- /dev/null +++ b/src/main/java/org/cbioportal/web/util/HttpRequestUtils.java @@ -0,0 +1,33 @@ +package org.cbioportal.web.util; + +import java.util.Enumeration; + +import jakarta.servlet.http.HttpServletRequest; +import org.json.simple.JSONObject; +import org.springframework.stereotype.Component; + +@Component +public class HttpRequestUtils { + + public JSONObject getPostData(HttpServletRequest request) { + // To support posted query data (when data would exceed URL length), + // write all post params to json on page where it can be consumed. + JSONObject paramsJson = new JSONObject(); + if (request.getMethod().equals("POST")) { + Enumeration parameterNames = request.getParameterNames(); + while (parameterNames.hasMoreElements()) { + String parameterName = parameterNames.nextElement(); + paramsJson.put(parameterName, request.getParameter(parameterName)); + } + } + return paramsJson; + } + + public String getBaseUrl(HttpServletRequest request) { + String currentUrl = request.getRequestURL().toString(); + String contextPath = request.getContextPath(); + String baseURL = currentUrl.substring(0, currentUrl.length() - request.getRequestURI().length()) + contextPath; + return baseURL.replaceAll("https?://", ""); + } + +} diff --git a/web/src/main/java/org/cbioportal/web/util/IdPopulator.java b/src/main/java/org/cbioportal/web/util/IdPopulator.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/IdPopulator.java rename to src/main/java/org/cbioportal/web/util/IdPopulator.java diff --git a/web/src/main/java/org/cbioportal/web/util/InvolvedCancerStudyExtractorInterceptor.java b/src/main/java/org/cbioportal/web/util/InvolvedCancerStudyExtractorInterceptor.java similarity index 93% rename from web/src/main/java/org/cbioportal/web/util/InvolvedCancerStudyExtractorInterceptor.java rename to src/main/java/org/cbioportal/web/util/InvolvedCancerStudyExtractorInterceptor.java index 91720ee1f81..7e500845fb1 100644 --- a/web/src/main/java/org/cbioportal/web/util/InvolvedCancerStudyExtractorInterceptor.java +++ b/src/main/java/org/cbioportal/web/util/InvolvedCancerStudyExtractorInterceptor.java @@ -33,32 +33,60 @@ package org.cbioportal.web.util; import com.fasterxml.jackson.databind.ObjectMapper; -import java.util.*; -import java.util.stream.Collectors; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.HashSet; +import java.util.List; +import java.util.Set; +import java.util.stream.Collectors; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.cbioportal.model.AlterationFilter; import org.cbioportal.model.MolecularProfile; import org.cbioportal.model.MolecularProfileCaseIdentifier; import org.cbioportal.model.SampleList; import org.cbioportal.persistence.cachemaputil.CacheMapUtil; -import org.cbioportal.web.parameter.*; +import org.cbioportal.web.parameter.ClinicalAttributeCountFilter; +import org.cbioportal.web.parameter.ClinicalDataBinCountFilter; +import org.cbioportal.web.parameter.ClinicalDataCountFilter; +import org.cbioportal.web.parameter.ClinicalDataIdentifier; +import org.cbioportal.web.parameter.ClinicalDataMultiStudyFilter; +import org.cbioportal.web.parameter.GenePanelDataMultipleStudyFilter; +import org.cbioportal.web.parameter.GenericAssayDataBinCountFilter; +import org.cbioportal.web.parameter.GenericAssayDataCountFilter; +import org.cbioportal.web.parameter.GenericAssayDataMultipleStudyFilter; +import org.cbioportal.web.parameter.GenomicDataBinCountFilter; +import org.cbioportal.web.parameter.GenomicDataCountFilter; +import org.cbioportal.web.parameter.GroupFilter; +import org.cbioportal.web.parameter.MolecularDataMultipleStudyFilter; +import org.cbioportal.web.parameter.MolecularProfileCasesGroupAndAlterationTypeFilter; +import org.cbioportal.web.parameter.MolecularProfileCasesGroupFilter; +import org.cbioportal.web.parameter.MolecularProfileFilter; +import org.cbioportal.web.parameter.MutationMultipleStudyFilter; +import org.cbioportal.web.parameter.PatientFilter; +import org.cbioportal.web.parameter.PatientIdentifier; +import org.cbioportal.web.parameter.SampleFilter; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.cbioportal.web.parameter.SampleMolecularIdentifier; +import org.cbioportal.web.parameter.StructuralVariantFilter; +import org.cbioportal.web.parameter.StudyViewFilter; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; -import org.springframework.web.servlet.handler.HandlerInterceptorAdapter; +import org.springframework.beans.factory.annotation.Qualifier; +import org.springframework.web.servlet.HandlerInterceptor; -@Component -public class InvolvedCancerStudyExtractorInterceptor extends HandlerInterceptorAdapter { +public class InvolvedCancerStudyExtractorInterceptor implements HandlerInterceptor { @Autowired private UniqueKeyExtractor uniqueKeyExtractor; private ObjectMapper objectMapper = new ObjectMapper(); + @Qualifier("staticRefCacheMapUtil") @Autowired private CacheMapUtil cacheMapUtil; @@ -106,11 +134,14 @@ public class InvolvedCancerStudyExtractorInterceptor extends HandlerInterceptorA public static final String GENERIC_ASSAY_BINARY_ENRICHMENT_FETCH_PATH = "/generic-assay-binary-enrichments/fetch"; public static final String CLINICAL_EVENT_TYPE_COUNT_FETCH_PATH = "/clinical-event-type-counts/fetch"; - @Override public boolean preHandle(HttpServletRequest request, HttpServletResponse response, Object handler) throws Exception { + @Override public boolean preHandle(HttpServletRequest request, HttpServletResponse response, Object handler) { if (!request.getMethod().equals("POST")) { return true; // no attribute extraction needed because all user supplied filter objects are in POST requests } - String requestPathInfo = request.getPathInfo(); + // TODO when reimplemeting different dispatcherservlets with different context roots + // reset this to 'String requestPathInfo = request.getPathInfo();' + String requestPathInfo = request.getPathInfo() == null? request.getServletPath() : request.getPathInfo(); + requestPathInfo = requestPathInfo.replaceFirst("^/api", ""); if (requestPathInfo.equals(PATIENT_FETCH_PATH)) { return extractAttributesFromPatientFilter(request); } else if (requestPathInfo.equals(SAMPLE_FETCH_PATH)) { @@ -187,7 +218,7 @@ private boolean extractAttributesFromPatientFilter(HttpServletRequest request) { private Collection extractCancerStudyIdsFromPatientFilter(PatientFilter patientFilter) { // use hashset as the study list in the patientFilter will usually be populated with many duplicate values - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (patientFilter.getPatientIdentifiers() != null) { for (PatientIdentifier patientIdentifier : patientFilter.getPatientIdentifiers()) { studyIdSet.add(patientIdentifier.getStudyId()); @@ -218,7 +249,7 @@ private boolean extractAttributesFromSampleFilter(HttpServletRequest request) { private Collection extractCancerStudyIdsFromSampleFilter(SampleFilter sampleFilter) { // use hashset as the study list in the sampleFilter will usually be populated with many duplicate values - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (sampleFilter.getSampleListIds() != null) { extractCancerStudyIdsFromSampleListIds(sampleFilter.getSampleListIds(), studyIdSet); } else if (sampleFilter.getSampleIdentifiers() != null) { @@ -249,7 +280,7 @@ private boolean extractAttributesFromMolecularProfileFilter(HttpServletRequest r private Collection extractCancerStudyIdsFromMolecularProfileFilter(MolecularProfileFilter molecularProfileFilter) { // use hashset as the study list in the molecularProfileFilter may be populated with many duplicate values - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (molecularProfileFilter.getStudyIds() != null) { studyIdSet.addAll(molecularProfileFilter.getStudyIds()); } else { @@ -278,7 +309,7 @@ private boolean extractAttributesFromClinicalAttributeCountFilter(HttpServletReq private Collection extractCancerStudyIdsFromClinicalAttributeCountFilter(ClinicalAttributeCountFilter clinicalAttributeCountFilter) { // use hashset as the study list in the clinicalAttributeCountFilter may be populated with many duplicate values - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (clinicalAttributeCountFilter.getSampleListId() != null) { extractCancerStudyIdsFromSampleListIds(Arrays.asList(clinicalAttributeCountFilter.getSampleListId()), studyIdSet); } else { @@ -307,7 +338,7 @@ private boolean extractAttributesFromClinicalDataMultiStudyFilter(HttpServletReq private Collection extractCancerStudyIdsFromClinicalDataMultiStudyFilter(ClinicalDataMultiStudyFilter clinicalDataMultiStudyFilter) { // use hashset as the study list in the clinicalDataMultiStudyFilter may be populated with many duplicate values - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); for(ClinicalDataIdentifier clinicalDataIdentifier : clinicalDataMultiStudyFilter.getIdentifiers()) { studyIdSet.add(clinicalDataIdentifier.getStudyId()); } @@ -333,7 +364,7 @@ private boolean extractAttributesFromGenePanelDataMultipleStudyFilter(HttpServle } private Collection extractCancerStudyIdsFromGenePanelDataMultipleStudyFilter(GenePanelDataMultipleStudyFilter genePanelDataMultipleStudyFilter) { - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (genePanelDataMultipleStudyFilter.getMolecularProfileIds() != null) { extractCancerStudyIdsFromMolecularProfileIds(genePanelDataMultipleStudyFilter.getMolecularProfileIds(), studyIdSet); } else { @@ -361,7 +392,7 @@ private boolean extractAttributesFromMolecularDataMultipleStudyFilter(HttpServle } private Collection extractCancerStudyIdsFromMolecularDataMultipleStudyFilter(MolecularDataMultipleStudyFilter molecularDataMultipleStudyFilter) { - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (molecularDataMultipleStudyFilter.getMolecularProfileIds() != null) { extractCancerStudyIdsFromMolecularProfileIds(molecularDataMultipleStudyFilter.getMolecularProfileIds(), studyIdSet); } else { @@ -389,7 +420,7 @@ private boolean extractAttributesFromGenericAssayDataMultipleStudyFilter(HttpSer } private Collection extractCancerStudyIdsFromGenericAssayDataMultipleStudyFilter(GenericAssayDataMultipleStudyFilter genericAssayDataMultipleStudyFilter) { - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (genericAssayDataMultipleStudyFilter.getMolecularProfileIds() != null) { extractCancerStudyIdsFromMolecularProfileIds(genericAssayDataMultipleStudyFilter.getMolecularProfileIds(), studyIdSet); } else { @@ -417,7 +448,7 @@ private boolean extractAttributesFromMutationMultipleStudyFilter(HttpServletRequ } private Set extractCancerStudyIdsFromMutationMultipleStudyFilter(MutationMultipleStudyFilter mutationMultipleStudyFilter) { - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (mutationMultipleStudyFilter.getMolecularProfileIds() != null) { extractCancerStudyIdsFromMolecularProfileIds(mutationMultipleStudyFilter.getMolecularProfileIds(), studyIdSet); } else { @@ -685,7 +716,7 @@ private boolean extractAttributesFromStructuralVariantFilter(HttpServletRequest } private Collection extractCancerStudyIdsFromStructuralVariantFilter(StructuralVariantFilter structuralVariantFilter) { - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (structuralVariantFilter.getSampleMolecularIdentifiers() != null) { // controller handler will preferentially use SampleMolecularIdentifiers if they are present in the filter extractCancerStudyIdsFromSampleMolecularIdentifiers(structuralVariantFilter.getSampleMolecularIdentifiers(), studyIdSet); @@ -699,7 +730,7 @@ private Collection extractCancerStudyIdsFromStructuralVariantFilter(Stru } private Set extractCancerStudyIdsFromSampleIdentifiers(Collection sampleIdentifiers) { - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); extractCancerStudyIdsFromSampleIdentifiers(sampleIdentifiers, studyIdSet); return studyIdSet; } @@ -726,7 +757,7 @@ private void extractCancerStudyIdsFromMolecularProfileIds(Collection mol private void extractCancerStudyIdsFromSampleMolecularIdentifiers(List sampleMolecularIdentifiers, Set studyIdSet) { // use hashset as the study list in sampleMolecularIdentifiers may be populated with duplicate values - Set molecularProfileIds = new HashSet(); + Set molecularProfileIds = new HashSet<>(); for (SampleMolecularIdentifier sampleMolecularIdentifier: sampleMolecularIdentifiers) { molecularProfileIds.add(sampleMolecularIdentifier.getMolecularProfileId()); } @@ -738,7 +769,7 @@ private Set extractCancerStudyIdsFromClinicalDataBinCountFilter( if (clinicalDataBinCountFilter.getStudyViewFilter() != null) { return extractCancerStudyIdsFromStudyViewFilter(clinicalDataBinCountFilter.getStudyViewFilter()); } - return new HashSet(); + return new HashSet<>(); } private Set extractCancerStudyIdsFromGenomicDataBinCountFilter( @@ -746,7 +777,7 @@ private Set extractCancerStudyIdsFromGenomicDataBinCountFilter( if (genomicDataBinCountFilter.getStudyViewFilter() != null) { return extractCancerStudyIdsFromStudyViewFilter(genomicDataBinCountFilter.getStudyViewFilter()); } - return new HashSet(); + return new HashSet<>(); } private Set extractCancerStudyIdsFromGenomicDataCountFilter( @@ -762,7 +793,7 @@ private Set extractCancerStudyIdsFromGenericAssayDataBinCountFilter( if (genericAssayDataBinCountFilter.getStudyViewFilter() != null) { return extractCancerStudyIdsFromStudyViewFilter(genericAssayDataBinCountFilter.getStudyViewFilter()); } - return new HashSet(); + return new HashSet<>(); } private Set extractCancerStudyIdsFromGenericAssayDataCountFilter( @@ -770,7 +801,7 @@ private Set extractCancerStudyIdsFromGenericAssayDataCountFilter( if (genericAssayDataCountFilter.getStudyViewFilter() != null) { return extractCancerStudyIdsFromStudyViewFilter(genericAssayDataCountFilter.getStudyViewFilter()); } - return new HashSet(); + return new HashSet<>(); } private Set extractCancerStudyIdsFromClinicalDataCountFilter( @@ -778,11 +809,11 @@ private Set extractCancerStudyIdsFromClinicalDataCountFilter( if (clinicalDataCountFilter.getStudyViewFilter() != null) { return extractCancerStudyIdsFromStudyViewFilter(clinicalDataCountFilter.getStudyViewFilter()); } - return new HashSet(); + return new HashSet<>(); } private Set extractCancerStudyIdsFromStudyViewFilter(StudyViewFilter studyViewFilter) { - Set studyIdSet = new HashSet(); + Set studyIdSet = new HashSet<>(); if (studyViewFilter.getSampleIdentifiers() != null && !studyViewFilter.getSampleIdentifiers().isEmpty()) { extractCancerStudyIdsFromSampleIdentifiers(studyViewFilter.getSampleIdentifiers(), studyIdSet); } else { diff --git a/web/src/main/java/org/cbioportal/web/util/LinearDataBinner.java b/src/main/java/org/cbioportal/web/util/LinearDataBinner.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/LinearDataBinner.java rename to src/main/java/org/cbioportal/web/util/LinearDataBinner.java diff --git a/web/src/main/java/org/cbioportal/web/util/LogScaleDataBinner.java b/src/main/java/org/cbioportal/web/util/LogScaleDataBinner.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/LogScaleDataBinner.java rename to src/main/java/org/cbioportal/web/util/LogScaleDataBinner.java diff --git a/core/src/main/java/org/mskcc/cbio/portal/util/RequestBodyGZipFilter.java b/src/main/java/org/cbioportal/web/util/RequestBodyGZipFilter.java similarity index 90% rename from core/src/main/java/org/mskcc/cbio/portal/util/RequestBodyGZipFilter.java rename to src/main/java/org/cbioportal/web/util/RequestBodyGZipFilter.java index c1f9461a17e..7c68698c38c 100644 --- a/core/src/main/java/org/mskcc/cbio/portal/util/RequestBodyGZipFilter.java +++ b/src/main/java/org/cbioportal/web/util/RequestBodyGZipFilter.java @@ -1,12 +1,12 @@ -package org.mskcc.cbio.portal.util; +package org.cbioportal.web.util; -import com.google.common.net.HttpHeaders; +import jakarta.servlet.*; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; import org.springframework.beans.factory.annotation.Value; +import org.springframework.http.HttpHeaders; import org.springframework.stereotype.Component; -import javax.servlet.*; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; import java.io.IOException; @Component("requestBodyGZipFilter") @@ -19,7 +19,7 @@ public class RequestBodyGZipFilter implements Filter { */ @Value("${request_gzip_body_size_bytes:80000000}") private int maxInflatedRequestBodySize; - + @Value("${enable_request_body_gzip_compression:false}") private boolean enabled; @@ -61,8 +61,8 @@ public final void doFilter( if (!requestTypeSupported) { throw new IllegalStateException( "Received request with a Content-Encoding: gzip header and a request method of: " + - request.getMethod() - + " Only POST requests are supported." + request.getMethod() + + " Only POST requests are supported." ); } @@ -71,7 +71,7 @@ public final void doFilter( chain.doFilter(request, response); } - + @Override public final void destroy() { // Nothing to destroy (Sonar asks you to comment if you leave a method empty) diff --git a/src/main/java/org/cbioportal/web/util/ResettableHttpServletRequestFilter.java b/src/main/java/org/cbioportal/web/util/ResettableHttpServletRequestFilter.java new file mode 100644 index 00000000000..b34fe2eaaab --- /dev/null +++ b/src/main/java/org/cbioportal/web/util/ResettableHttpServletRequestFilter.java @@ -0,0 +1,41 @@ +package org.cbioportal.web.util; + +import java.io.IOException; + +import jakarta.servlet.*; +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.slf4j.LoggerFactory; +import org.slf4j.Logger; +import org.springframework.stereotype.Component; +import org.springframework.web.util.ContentCachingRequestWrapper; +import org.springframework.web.util.ContentCachingResponseWrapper; + + +/** + * + * @author ochoaa + * + */ +@Component +public class ResettableHttpServletRequestFilter implements Filter { + private Logger LOG = LoggerFactory.getLogger(ResettableHttpServletRequestFilter.class); + + @Override + public void init(FilterConfig aChain) throws ServletException { + // do nothing + } + + @Override + public void doFilter(ServletRequest request, ServletResponse response, FilterChain filterChain) throws IOException, ServletException { + ContentCachingRequestWrapper wrappedRequest = new ContentCachingRequestWrapper((HttpServletRequest) request); + ContentCachingResponseWrapper wrappedResponse = new ContentCachingResponseWrapper((HttpServletResponse) response); + filterChain.doFilter(wrappedRequest, wrappedResponse); + wrappedResponse.copyBodyToResponse(); + } + + @Override + public void destroy() { + // do nothing + } +} diff --git a/web/src/main/java/org/cbioportal/web/util/ScientificSmallDataBinner.java b/src/main/java/org/cbioportal/web/util/ScientificSmallDataBinner.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/ScientificSmallDataBinner.java rename to src/main/java/org/cbioportal/web/util/ScientificSmallDataBinner.java diff --git a/web/src/main/java/org/cbioportal/web/util/StudyViewFilterApplier.java b/src/main/java/org/cbioportal/web/util/StudyViewFilterApplier.java similarity index 99% rename from web/src/main/java/org/cbioportal/web/util/StudyViewFilterApplier.java rename to src/main/java/org/cbioportal/web/util/StudyViewFilterApplier.java index 0b97b6df954..de4e5440e10 100644 --- a/web/src/main/java/org/cbioportal/web/util/StudyViewFilterApplier.java +++ b/src/main/java/org/cbioportal/web/util/StudyViewFilterApplier.java @@ -19,13 +19,11 @@ import org.springframework.context.ApplicationContext; import org.springframework.stereotype.Component; -import javax.annotation.PostConstruct; @Component public class StudyViewFilterApplier { @Autowired private ApplicationContext applicationContext; - StudyViewFilterApplier instance; // This gets initialized and overwritten. We do this because Spring's unit tests // don't know how to autowire this, even though production Spring does. If we @@ -33,10 +31,6 @@ public class StudyViewFilterApplier { @Autowired private List subFilterAppliers = new ArrayList<>(); - @PostConstruct - private void init() { - instance = applicationContext.getBean(StudyViewFilterApplier.class); - } @Autowired private SampleService sampleService; @@ -84,7 +78,7 @@ public SampleIdentifier apply(Sample sample) { }; public List apply(StudyViewFilter studyViewFilter) { - return (instance == null ? this : instance).cachedApply(studyViewFilter); + return this.cachedApply(studyViewFilter); } @Cacheable( diff --git a/web/src/main/java/org/cbioportal/web/util/StudyViewFilterUtil.java b/src/main/java/org/cbioportal/web/util/StudyViewFilterUtil.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/StudyViewFilterUtil.java rename to src/main/java/org/cbioportal/web/util/StudyViewFilterUtil.java diff --git a/web/src/main/java/org/cbioportal/web/util/UniqueKeyExtractor.java b/src/main/java/org/cbioportal/web/util/UniqueKeyExtractor.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/UniqueKeyExtractor.java rename to src/main/java/org/cbioportal/web/util/UniqueKeyExtractor.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/AbstractPatientTreatmentFilter.java b/src/main/java/org/cbioportal/web/util/appliers/AbstractPatientTreatmentFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/AbstractPatientTreatmentFilter.java rename to src/main/java/org/cbioportal/web/util/appliers/AbstractPatientTreatmentFilter.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/AbstractSampleTreatmentFilter.java b/src/main/java/org/cbioportal/web/util/appliers/AbstractSampleTreatmentFilter.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/AbstractSampleTreatmentFilter.java rename to src/main/java/org/cbioportal/web/util/appliers/AbstractSampleTreatmentFilter.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/ClinicalEventFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/ClinicalEventFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/ClinicalEventFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/ClinicalEventFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentGroupFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentGroupFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentGroupFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentGroupFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentTargetFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentTargetFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentTargetFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/PatientTreatmentTargetFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentGroupFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentGroupFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentGroupFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentGroupFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentTargetFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentTargetFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentTargetFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/SampleTreatmentTargetFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/StudyViewSubFilterApplier.java b/src/main/java/org/cbioportal/web/util/appliers/StudyViewSubFilterApplier.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/StudyViewSubFilterApplier.java rename to src/main/java/org/cbioportal/web/util/appliers/StudyViewSubFilterApplier.java diff --git a/web/src/main/java/org/cbioportal/web/util/appliers/TreatmentRowExtractor.java b/src/main/java/org/cbioportal/web/util/appliers/TreatmentRowExtractor.java similarity index 100% rename from web/src/main/java/org/cbioportal/web/util/appliers/TreatmentRowExtractor.java rename to src/main/java/org/cbioportal/web/util/appliers/TreatmentRowExtractor.java diff --git a/portal/src/main/resources/antisamy.xml b/src/main/resources/antisamy.xml similarity index 100% rename from portal/src/main/resources/antisamy.xml rename to src/main/resources/antisamy.xml diff --git a/src/main/resources/application.properties.EXAMPLE b/src/main/resources/application.properties.EXAMPLE new file mode 100644 index 00000000000..673eb86ba6f --- /dev/null +++ b/src/main/resources/application.properties.EXAMPLE @@ -0,0 +1,406 @@ +# app name +app.name=cbioportal + +# Spring Boot Properties 2.7.14 +spring.mvc.pathmatch.matching-strategy = ANT_PATH_MATCHER + +# database +spring.datasource.url=jdbc:mysql://localhost:3306/cbioportal?useSSL=false +spring.datasource.username=cbio +spring.datasource.password=P@ssword1 +spring.datasource.driver-class-name=com.mysql.jdbc.Driver +spring.jpa.database-platform=org.hibernate.dialect.MySQL5InnoDBDialect + +# this should normally be set to false. In some cases you could set this to true (e.g. for testing a feature of a newer release that is not related to the schema change in expected db version above): +db.suppress_schema_version_mismatch_errors=false + +# Enable compression on responses +server.compression.enabled=true + +# set tomcat_resource_name when using dbconnector=jndi instead of the default +# dbconnector=dbcp. Note that dbconnector needs to be set in CATLINA_OPTS when +# using Tomcat (CATALINA_OPTS="-Ddbconnector=jndi"). It does not get picked up +# from the properties file +# (https://github.com/cBioPortal/cbioportal/issues/6148). +# +# db.tomcat_resource_name=jdbc/cbioportal + +# web page cosmetics +skin.title=cBioPortal for Cancer Genomics +skin.email_contact=cbioportal at googlegroups dot com +skin.authorization_message=Access to this portal is only available to authorized users at Memorial Sloan Kettering Cancer Center. [Request Access]. +skin.example_study_queries=tcga\ntcga -provisional\ntcga -moratorium\ntcga OR icgc\n-"cell line"\nprostate mskcc\nesophageal OR stomach\nserous\nbreast +skin.data_sets_header=The portal currently contains data from the following cancer genomics studies. The table below lists the number of available samples per data type and tumor. +skin.data_sets_footer=Data sets of TCGA studies were downloaded from Broad Firehose (http://gdac.broadinstitute.org) and updated monthly. In some studies, data sets were from the TCGA working groups directly. +#skin.examples_right_column_html= + +# documentation pages +skin.documentation.baseurl=https://raw.githubusercontent.com/cBioPortal/cbioportal/master/docs/ +skin.documentation.markdown=true +skin.documentation.faq=user-guide/faq.md +skin.documentation.about=About-Us.md +skin.documentation.news=News.md +skin.documentation.oql=Onco-Query-Language.md +skin.documentation.dat=Authenticating-Users-via-Tokens.md + +# setting controlling the logos +skin.right_logo= +skin.tag_line_image=tag_line.png + +# setting controlling which tabs to hide. +skin.show_news_tab=true +skin.show_data_tab=true +skin.show_web_api_tab=true +skin.show_r_matlab_tab=true +skin.show_tutorials_tab=true +skin.show_faqs_tab=true +skin.show_tools_tab=true +skin.show_about_tab=true + +# settings controlling the whats new blurb +skin.right_nav.whats_new_blurb=

    • New data and features released
    • New tools released

        Sign up for low-volume email news alerts:
        
        Or follow us @cbioportal on Twitter + +# setting controlling the blurb +skin.blurb=The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.

    Please adhere to the TCGA publication guidelines when using TCGA data in your publications.

    Please cite Gao et al. Sci. Signal. 2013 & Cerami et al. Cancer Discov. 2012 when publishing results based on cBioPortal.

    + +# setting controlling the citation below the blurb +# skin.citation_rule_text=Please cite: Cerami et al., 2012 & Gao et al., 2013 + +# setting controlling the footer +skin.footer= | MSKCC | TCGA +# setting controlling listing the development channels in the site's footer section +#skin.footer_show_dev=false + +# setting controlling html for the contact +skin.login.contact_html=If you think you have received this message in error, please contact us at cbioportal-access@cbio.mskcc.org + +# setting controlling the saml registration +skin.login.saml.registration_html=Sign in with MSK + +# settings controlling what to show in the right navigation bar +skin.right_nav.show_data_sets=true +skin.right_nav.show_examples=true +skin.right_nav.show_testimonials=true +skin.right_nav.show_whats_new=true +#skin.right_nav.show_twitter=false + +# settings controlling what to show in the right navigation bar +skin.study_view.link_text=To build your own case set, try out our enhanced Study View. + +# setting controlling the default setting for filtering genes in patient view +# skin.patientview.filter_genes_profiled_all_samples=false + +# settings controlling the appearance of the annotation filter menu in study view and group comparison +# skin.show_settings_menu=false + +# controls the appearance the logout button on a portal with user authentication +# skin.hide_logout_button=false + +# controls whether namespace columns of the MAF file are immediately visible in mutation tables (default is 'false') +# skin.mutation_table.namespace_column.show_by_default=true + +# controls which columns from the mutation tables are immediately visible in mutation tables +# skin.results_view.mutation_table.columns.show_on_init=Sample Id,Protein Change,Annotation,Mutation Type,Copy #,Cosmic,# Mut in Sample +# skin.patient_view.mutation_table.columns.show_on_init=Gene,Protein Change,Annotation,Mutation Type,Copy #,Cosmic,# Mut in Sample +# skin.patient_view.copy_number_table.columns.show_on_init=Gene,CNA,Annotation,Cytoband,Cohort +# skin.patient_view.structural_variant_table.columns.show_on_init=Gene 1,Gene2,Status,Annotation,Variant Class,Event Info,Connection Type + +# setting controlling the home page +## enable this to show studies for which the user does not have permission (will appear greyed out and cannot be analyzed in study view or results view). +# skin.home_page.show_unauthorized_studies=false +## enable this to configure a global message for the studies that are unauthorized; the message can contain placecards like {$.Owner.email} for the studies that have the information in the study tags +# skin.home_page.unauthorized_studies_global_message=The study is unauthorized. You need to request access. +## enable this to show reference genome next to the samples +# skin.home_page.show_reference_genome=false + +## setting controlling whether Download tabs and download/copy-to-clipboard controls should be shown +# skin.hide_download_controls=false + +## setting controlling which name should be used to display the authenticated user (email, or username) +# skin.user_display_name=email + +## enable and set this property to specify a study group to be used to identify public studies for which no specific authorization entries are needed in the `authorities` table +# always_show_study_group= + +## enable expression data in multi-study queries (oncoprint and plots tab) +# true | false | (studies)=>{ return true } +enable_cross_study_expression=(studies)=>studies.filter(s=>/pan_can_atlas/.test(s.studyId) === false).length === 0 + +## Combined Study View Comparison Limits +# Any Number | Disabled when not set +# studyview.max_samples_selected= + +# multithreading configuration +multithread.core_pool_size=16 + +# mdacc heatmap integration +#show.mdacc.heatmap=true + +# patient view settings +patient_view_placeholder=false +digitalslidearchive.iframe.url=http://cancer.digitalslidearchive.net/index_mskcc.php?slide_name= +digitalslidearchive.meta.url=http://cancer.digitalslidearchive.net/local_php/get_slide_list_from_db_groupid_not_needed.php?slide_name_filter= +tumor_image.url=http://cbio.mskcc.org/cancergenomics/tcga-tumor-images/ +tcga_path_report.url=https://github.com/cbioportal/datahub/raw/master/tcga/pathology_reports/pathology_reports.txt + +# various url's +segfile.url=http://cbio.mskcc.org/cancergenomics/gdac-portal/seg/ + + +# The default OncoKB instance, the portal is connecting to, does not include any therapeutic information and the token is not required. +# If you wish to include such information, please consider obtaining a license to support future OncoKB development by following +# https://docs.cbioportal.org/2.4-integration-with-other-webservices/oncokb-data-access. + +# Enable OncoKB annotation (true, false) +show.oncokb=true + +# The URL of the OncoKB instance to connect to. +# The default address does not require authentication and is freely to use. +oncokb.public_api.url=https://public.api.oncokb.org/api/v1 + +# Your OncoKB Token which an be found under https://www.oncokb.org/account/settings +oncokb.token= + +# Enable merging of OncoKB icons by default +# oncokb.merge_icons_by_default=true + +# Enable "cBioPortal>=" driver annotation sources in the settings menu of Results View (true, false) +show.cbioportal=true +# Enable "COSMIC>=" driver annotation sources in the settings menu of Results View (true, false) +show.cosmic=true + +# Enable Chang's hotspot list (true, false) +show.hotspot=true + +# Enable Civic variant annotation (true, false) +show.civic=true + +# Link to My Cancer Genome. Please disable (set to false) when using cBioPortal with patient identifiable data due My Cancer Genome license restrictions. +mycancergenome.show=true + +# Enable transcript switch dropdown (true, false) +# show.transcript_dropdown=false + +# Show/hide p- and q-values in survival types table (default is true) +# survival.show_p_q_values_in_survival_type_table=false + +# Set initial x-axis limit for survival plot (by default, initial limit will be the latest event in the data) +# survival.initial_x_axis_limit=120 + +# Set Genome Nexus annotation sources, please list all sources name with comma-separated. +# Available sources: mutation_assessor +# show.genomenexus.annotation_sources=mutation_assessor + +# Choose Genome Nexus default set of isoforms. Read more at +# https://docs.cbioportal.org. (Options are uniprot or mskcc, default is mskcc) +# genomenexus.isoform_override_source=mskcc + +# Enable SIGNAL column in mutations table(true, false) +# show.signal=false + +# Enable NDex pathways integration (true, false) +# show.ndex=false + +# igv bam linking +igv.bam.linking= +# colon delimited +igv.bam.linking.studies= +openssl.binary= +signature.key= +encryption.key= +broad.bam.url= +broad.bam.checking.url= + +# pathway settings +include_networks=true +pathway_commons.url=http://www.pathwaycommons.org/pc2 + +# the new API uses the v3 of bitly API, and a java library to make the API call, so you only need to provide the access token +bitly.access.token= + +# google analytics +google_analytics_profile_id= + +# genomespace linking +genomespace=true + +# session-service url: http://[host]:[port]/[session_service_app]/api/sessions/[portal_instance]/ +# example session-service url: http://localhost:8080/session_service/api/sessions/public_portal/ +# see: https://github.com/cBioPortal/session-service +# excluding this value or setting it to an empty string will revert to the previous bookmarking method +# WARNING: do not use session service with -Dauthenticate=false +# either use authentication or change to -Dauthenticate=noauthsessionservice +session.service.url=https://cbioportal-session-service.herokuapp.com/session_service/api/sessions/heroku_portal/ +# if basic authentication is enabled on session service one should set: +#session.service.user= +#session.service.password= + +# disabled tabs, | delimited +# possible values: cancer_types_summary, mutual_exclusivity, comparison, plots, mutations, co_expression, enrichments, survival, network, download, bookmark, IGV +disabled_tabs= + +# study ids and categories to force to top of study selector +# format is category1#study1a,study1b,study1c;category2#study2 +priority_studies= + +# species and genomic information +species=human +ncbi.build=37 +ucsc.build=hg19 + +# default view in oncoprint (sample, patient (default)) +oncoprint.defaultview=patient + +# OncoPrint driver mutation annotations +# oncoprint.custom_driver_annotation.binary.menu_label=Custom driver annotation +# oncoprint.custom_driver_annotation.tiers.menu_label=Custom driver tiers +# oncoprint.custom_driver_annotation.binary.default=true +# oncoprint.custom_driver_annotation.tiers.default=true +oncoprint.oncokb.default=true +oncoprint.hotspots.default=true +# oncoprint.hide_vus.default=true +# oncoprint.clinical_tracks.config_json=classpath:/oncoprint-default-tracks.json +# oncoprint.clustered.default=true + +# Custom gene sets +# querypage.setsofgenes.location=file:/ + +# valid cache types are (ehcache-heap, ehcache-disk, ehcache-hybrid, redis), or use 'no-cache' to disable caching +# caution 1: the 'redis' caching option will likely cause a conflict when installing the portal in a tomcat installation which uses redisson for session management +# caution 2: this configuration needs to be set both at compile time and run time. See also https://github.com/cBioPortal/cbioportal/issues/8629 +persistence.cache_type=no-cache +# Enable cache statistics endpoint for cache monitoring +#cache.statistics_endpoint_enabled=false +# Turn cache management endpoint on or off (default) +# cache.endpoint.enabled=true +# API key for access to cache management endpoint +# cache.endpoint.api-key=fd15f1ae-66f2-4b8a-8d54-fb899b03557e +# Externalize the study data used for user authorization evaluation to Spring-managed caches such as EHCache or Redis. +# Enabling this might simplify cache-invalidation strategies (via /api/cache endpoint) because it allows for invalidation +# a central caching solution shared among cBioPortal containers in a single instance. It comes at the cost of extra calls +# to the caching provider. Default is 'false' meaning that cBioPortal will use a faster local HashMap-based cache for fast +# lookup of sample/patient/profile to cancer study relationships. +#cache.cache-map-utils.spring-managed=false + +# Redis properties +# Unique name for each portal instance, used for distinguishing caches +#redis.name= +#redis.leader_address= +#redis.follower_address= +#redis.database= +#redis.password= +#redis.ttl_mins=10000 +#redis.clear_on_startup=true + +# Ehcache properties +#ehcache.xml_configuration=/ehcache.xml + +# Properties for specifying cache size constraints +# - Zero is not an accepted value, will break deployment +# - disk size (if used) must be greater than heap size + +#ehcache.general_repository_cache.max_mega_bytes_heap=1024 +#ehcache.static_repository_cache_one.max_mega_bytes_heap=30 + +#ehcache.persistence_path=/tmp +#ehcache.general_repository_cache.max_mega_bytes_local_disk=4096 +#ehcache.static_repository_cache_one.max_mega_bytes_local_disk=32 + +# Default cross cancer study query +# query this session id when not specifying a study for +# linkout links e.g. /ln?q=TP53:MUT or when querying a single gene in quick +# search +# +# default_cross_cancer_study_session_id= +# +# if session service is not enabled, specify a comma separated list of studies +# here instead e.g.: +# +# default_cross_cancer_study_list=mixed_pipseq_2017,cellline_nci60 +# default_cross_cancer_study_list_name=My list of studies + +# Enable/Disable quick search (currently in beta, default is false) +# quick_search.enabled=true + +# enable/disable hrrs logging +# hrrs can be used for debugging - when enabled incoming web requests +# will be logged into the specified directory +# logs must be decrypted for more in-depth information +# see: https://github.com/vy/hrrs/blob/master/README.md +#hrrs.logging.filepath= +#hrrs.enable.logging=false + +# enable/disable aspectj logging +# if active, all enter/exits to methods in web, service-impl, +# and mybatis packages are logged +#aspect.enable.logging=false + +# ensembl URL template for transcript lookup in Mutations tab. Default is http://grch37.ensembl.org/homo_sapiens/Transcript/Summary?t=<%= transcriptId %> +#ensembl.transcript_url=http://ensembl.org/homo_sapiens/Transcript/Summary?t=<%= transcriptId %> + +# Enable/disable Persistent Cache (true, false) +# The Persistent Cache is a frontend feature that is used to cache semi static +# data produced by APIs. It uses IndexedDB as a means for persistent storage. +# This feature is disabled by default. +# enable_persistent_cache=true + +# Limit the size of gene queries (number). gene count * sample count < query_product_limit +# This limit is enforced on the frontend. +# query_product_limit=1000000 + +# Limit the size of samples in clinical tab in study view page. clinical attribute count * sample count < clinical_attribute_product_limit +# This limit is enforced on the frontend. +# clinical_attribute_product_limit=6500000 + +# Enable gsva to query +# skin.show_gsva=true +# Set default thresholds for geneset hierarchy +# skin.geneset_hierarchy.default_gsva_score=0.5 +# skin.geneset_hierarchy.default_p_value=0.05 +# Collapse the tree widget of the gsva hierarchy dialog on init +# skin.geneset_hierarchy.collapse_by_default=true + +# Compress some particularly large request bodies. enable_request_body_gzip_compression enables the feature, and +# request_gzip_body_size_bytes sets the maximum allowable uncompressed request body size in bytes. Requests larger than +# this value will be rejected. If unset, the default value will be 50000000, or 50 Mb. +# enable_request_body_gzip_compression=true +# request_gzip_body_size_bytes=80000000 + +# Installation map URL for installation map iframes. +# If blank or commented out, no map will be shown and that page will be hidden. +# installation_map_url=https://installationmap.netlify.app/ + +# Feature flag for treatment groups +# enable_treatment_groups=false + +# Set comparison categorical "NA" value (not case sensitive), separated by "|" +# comparison.categorical_na_values=NA|unknown + +# Set StudyDownloadLinkUrl +# Allows download links within DataSets Tab (See Portal.Properties documentation for more info) +# study_download_url= + +# download_group= + +## Set Logging Level +## Warning DEBUG level with security is not recommended +logging.level.root=INFO + +# vaf.sequential_mode.default=false +# vaf.log_scale.default=false + +## Redis HTTP Session Store +# Redis Session +## Comment out the line below to enable redis caching +spring.autoconfigure.exclude=org.springframework.boot.autoconfigure.data.redis.RedisAutoConfiguration +#spring.data.redis.host=localhost +#spring.data.redis.port=6379 + +server.tomcat.connection-timeout=20000 +server.tomcat.max-http-response-header-size=16384 +server.max-http-request-header-size=16384 + +## Enable Study Help Button on Study View Page +#skin.show_study_help_button=true + +# EOL - Do not delete the following lines diff --git a/portal/src/main/resources/artwork/logo.ai b/src/main/resources/artwork/logo.ai similarity index 100% rename from portal/src/main/resources/artwork/logo.ai rename to src/main/resources/artwork/logo.ai diff --git a/portal/src/main/resources/artwork/step_1.ai b/src/main/resources/artwork/step_1.ai similarity index 100% rename from portal/src/main/resources/artwork/step_1.ai rename to src/main/resources/artwork/step_1.ai diff --git a/portal/src/main/resources/artwork/step_2.ai b/src/main/resources/artwork/step_2.ai similarity index 100% rename from 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b/src/main/resources/content/news_tcga.markdown similarity index 100% rename from portal/src/main/resources/content/news_tcga.markdown rename to src/main/resources/content/news_tcga.markdown diff --git a/portal/src/main/resources/content/onco_spec_lang_desc.markdown b/src/main/resources/content/onco_spec_lang_desc.markdown similarity index 100% rename from portal/src/main/resources/content/onco_spec_lang_desc.markdown rename to src/main/resources/content/onco_spec_lang_desc.markdown diff --git a/portal/src/main/resources/content/process.sh b/src/main/resources/content/process.sh similarity index 100% rename from portal/src/main/resources/content/process.sh rename to src/main/resources/content/process.sh diff --git a/portal/src/main/resources/content/release_notes_mutation_mapper.markdown b/src/main/resources/content/release_notes_mutation_mapper.markdown similarity index 100% rename from portal/src/main/resources/content/release_notes_mutation_mapper.markdown rename to src/main/resources/content/release_notes_mutation_mapper.markdown diff --git a/portal/src/main/resources/content/release_notes_oncoprinter.markdown b/src/main/resources/content/release_notes_oncoprinter.markdown similarity index 100% rename from portal/src/main/resources/content/release_notes_oncoprinter.markdown rename to src/main/resources/content/release_notes_oncoprinter.markdown diff --git a/portal/src/main/resources/content/testing_api.markdown b/src/main/resources/content/testing_api.markdown similarity index 100% rename from portal/src/main/resources/content/testing_api.markdown rename to src/main/resources/content/testing_api.markdown diff --git a/portal/src/main/resources/content/visualize_your_data.markdown b/src/main/resources/content/visualize_your_data.markdown similarity index 100% rename from portal/src/main/resources/content/visualize_your_data.markdown rename to src/main/resources/content/visualize_your_data.markdown diff --git a/portal/src/main/resources/content/web_api.markdown b/src/main/resources/content/web_api.markdown similarity index 100% rename from portal/src/main/resources/content/web_api.markdown rename to src/main/resources/content/web_api.markdown diff --git a/db-scripts/src/main/resources/cbioportal-er-diagram.mwb b/src/main/resources/db-scripts/cbioportal-er-diagram.mwb similarity index 100% rename from db-scripts/src/main/resources/cbioportal-er-diagram.mwb rename to src/main/resources/db-scripts/cbioportal-er-diagram.mwb diff --git a/db-scripts/src/main/resources/cbioportal-er-diagram.pdf b/src/main/resources/db-scripts/cbioportal-er-diagram.pdf similarity index 100% rename from db-scripts/src/main/resources/cbioportal-er-diagram.pdf rename to src/main/resources/db-scripts/cbioportal-er-diagram.pdf diff --git a/db-scripts/src/main/resources/cbioportal-er-diagram.png b/src/main/resources/db-scripts/cbioportal-er-diagram.png similarity index 100% rename from db-scripts/src/main/resources/cbioportal-er-diagram.png rename to src/main/resources/db-scripts/cbioportal-er-diagram.png diff --git a/db-scripts/src/main/resources/cgds.sql b/src/main/resources/db-scripts/cgds.sql similarity index 100% rename from db-scripts/src/main/resources/cgds.sql rename to src/main/resources/db-scripts/cgds.sql diff --git a/db-scripts/src/main/resources/migration.sql b/src/main/resources/db-scripts/migration.sql similarity index 100% rename from db-scripts/src/main/resources/migration.sql rename to src/main/resources/db-scripts/migration.sql diff --git a/portal/src/main/webapp/js/src/load-frontend.js b/src/main/resources/js/load-frontend.js similarity index 100% rename from portal/src/main/webapp/js/src/load-frontend.js rename to src/main/resources/js/load-frontend.js diff --git a/src/main/resources/log4j.properties.EXAMPLE b/src/main/resources/log4j.properties.EXAMPLE new file mode 100644 index 00000000000..d3786f5c130 --- /dev/null +++ b/src/main/resources/log4j.properties.EXAMPLE @@ -0,0 +1,19 @@ +# Change INFO to DEBUG, if you want to see debugging info on underlying libraries we use. +log4j.rootLogger=INFO, a + +# Change INFO to DEBUG, if you want see debugging info on our packages only. +log4j.category.org.mskcc=INFO +#log4j.category.org.springframework=ALL + +## IMPORTANT - THRESHOLD SHOULD NOT BE DEBUG FOR PRODUCTION, CREDENTIALS CAN BE DISPLAYED! +#log4j.logger.org.springframework.security=DEBUG +#log4j.logger.org.springframework.integration=DEBUG + +log4j.appender.a = org.apache.log4j.ConsoleAppender +log4j.appender.a.target=System.out +log4j.appender.a.immediateFlush=true +log4j.appender.a.encoding=UTF-8 +log4j.appender.a.threshold=Error + +log4j.appender.a.layout = org.apache.log4j.PatternLayout +log4j.appender.a.layout.ConversionPattern = %d{yyyy-MM-dd HH:mm:ss} [%t] %-5p %c - %m%n diff --git a/portal/src/main/resources/logging.properties b/src/main/resources/logging.properties similarity index 100% rename from portal/src/main/resources/logging.properties rename to src/main/resources/logging.properties diff --git a/src/main/resources/maven.properties b/src/main/resources/maven.properties index 6ec279c1ec1..24e2bf7fc5a 100644 --- a/src/main/resources/maven.properties +++ b/src/main/resources/maven.properties @@ -1,4 +1,4 @@ -app.version=${timestamp} -portal.version=${project.version} +app.version=@maven.build.timestamp@ +portal.version=@project.version@ # this is the *expected* DB version (expected by the code). Don't set it manually, it is filled by maven: -db.version=${db.version} \ No newline at end of file +db.version=@db.version@ \ No newline at end of file diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/AlterationCountsMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/AlterationCountsMapper.xml similarity index 95% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/AlterationCountsMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/AlterationCountsMapper.xml index 01ed5f7bae7..f9e53a35b08 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/AlterationCountsMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/AlterationCountsMapper.xml @@ -5,10 +5,10 @@ SELECT @@ -22,7 +21,7 @@ FROM type_of_cancer - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY type_of_cancer.TYPE_OF_CANCER_ID ASC @@ -34,7 +33,7 @@ diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.xml similarity index 94% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.xml index 36e898ebaa9..8dbdbc9a942 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalAttributeMapper.xml @@ -2,7 +2,6 @@ - clinical_attribute_meta.ATTR_ID AS "${prefix}attrId", @@ -81,7 +80,7 @@ - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY clinical_attribute_meta.ATTR_ID ASC @@ -93,7 +92,7 @@ SELECT - COUNT(*) AS totalCount + COUNT(*) AS "totalCount" @@ -162,7 +162,7 @@ INNER JOIN type_of_cancer ON cancer_study.TYPE_OF_CANCER_ID = type_of_cancer.TYPE_OF_CANCER_ID - + ORDER BY ${sortBy} ${direction} @@ -200,7 +200,7 @@ @@ -244,7 +244,7 @@ INNER JOIN ( SELECT DISTINCT clinical_sample.INTERNAL_ID - + , sample.STABLE_ID AS SORT_BY @@ -263,11 +263,11 @@ - + AND clinical_sample.ATTR_VALUE LIKE CONCAT('%', #{searchTerm}, '%') - + diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalEventMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalEventMapper.xml similarity index 94% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalEventMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/ClinicalEventMapper.xml index 44f8083bf2e..58cd60d098f 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalEventMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/ClinicalEventMapper.xml @@ -4,14 +4,14 @@ - clinical_event.CLINICAL_EVENT_ID AS clinicalEventId, - clinical_event.EVENT_TYPE AS eventType, - patient.STABLE_ID AS patientId, - cancer_study.CANCER_STUDY_IDENTIFIER AS studyId + clinical_event.CLINICAL_EVENT_ID AS "clinicalEventId", + clinical_event.EVENT_TYPE AS "eventType", + patient.STABLE_ID AS "patientId", + cancer_study.CANCER_STUDY_IDENTIFIER AS "studyId" , - clinical_event.START_DATE AS startDate, - clinical_event.STOP_DATE AS stopDate + clinical_event.START_DATE AS "startDate", + clinical_event.STOP_DATE AS "stopDate" @@ -40,7 +40,7 @@ - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY clinical_event.PATIENT_ID ASC @@ -79,7 +79,7 @@ - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY clinical_event.PATIENT_ID ASC @@ -105,7 +105,7 @@ from sample Inner Join patient on sample.PATIENT_ID = patient.INTERNAL_ID Inner join clinical_event on clinical_event.PATIENT_ID = patient.INTERNAL_ID - Inner Join cancer_study on cancer_study.CANCER_STUDY_ID = patient.cancer_STUDY_ID + Inner Join cancer_study on cancer_study.CANCER_STUDY_ID = patient.CANCER_STUDY_ID cancer_study.CANCER_STUDY_IDENTIFIER IN diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.xml similarity index 85% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.xml index db0e5e6f34c..58e2a37da07 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/CopyNumberSegmentMapper.xml @@ -3,19 +3,18 @@ - - copy_number_seg.SEG_ID AS segId, - copy_number_seg.CANCER_STUDY_ID AS cancerStudyId, - cancer_study.CANCER_STUDY_IDENTIFIER AS cancerStudyIdentifier, - copy_number_seg.SAMPLE_ID AS sampleId, - patient.STABLE_ID AS patientId, - sample.STABLE_ID AS sampleStableId, - copy_number_seg.CHR AS chr, - copy_number_seg.START AS start, - copy_number_seg.END AS end, - copy_number_seg.NUM_PROBES AS numProbes, - copy_number_seg.SEGMENT_MEAN AS segmentMean + copy_number_seg.SEG_ID AS "segId", + copy_number_seg.CANCER_STUDY_ID AS "cancerStudyId", + cancer_study.CANCER_STUDY_IDENTIFIER AS "cancerStudyIdentifier", + copy_number_seg.SAMPLE_ID AS "sampleId", + patient.STABLE_ID AS "patientId", + sample.STABLE_ID AS "sampleStableId", + copy_number_seg.CHR AS "chr", + copy_number_seg.START AS "start", + copy_number_seg.END AS "end", + copy_number_seg.NUM_PROBES AS "numProbes", + copy_number_seg.SEGMENT_MEAN AS "segmentMean" @@ -60,7 +59,7 @@ AND copy_number_seg.CHR=#{chromosome} - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY copy_number_seg.CHR ASC diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/CosmicCountMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/CosmicCountMapper.xml similarity index 76% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/CosmicCountMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/CosmicCountMapper.xml index 9e177f5bb46..df0fe7e0fe3 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/CosmicCountMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/CosmicCountMapper.xml @@ -3,13 +3,12 @@ - SELECT - COUNT(*) AS totalCount + COUNT(*) AS "totalCount" @@ -242,17 +242,17 @@ SELECT - COUNT(*) AS totalCount + COUNT(*) AS "totalCount" @@ -103,8 +102,8 @@ @@ -129,7 +128,7 @@ SELECT genetic_entity.STABLE_ID as stableId, genetic_entity.ENTITY_TYPE as entityType diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.xml similarity index 98% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.xml index cb747f37e62..6ed4252ada4 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/GenesetHierarchyMapper.xml @@ -2,7 +2,6 @@ - a.NODE_ID AS nodeId, @@ -43,8 +42,7 @@ ) ORDER BY b.NODE_NAME, a.NODE_NAME - - + SELECT - genetic_profile.STABLE_ID AS molecularProfileId, + genetic_profile.STABLE_ID AS "molecularProfileId", genetic_profile_samples.ORDERED_SAMPLE_LIST AS "commaSeparatedSampleIds" FROM genetic_profile_samples INNER JOIN genetic_profile ON genetic_profile_samples.GENETIC_PROFILE_ID = genetic_profile.GENETIC_PROFILE_ID @@ -39,8 +39,8 @@ SELECT - gene.ENTREZ_GENE_ID AS entrezGeneId, - genetic_alteration.VALUES AS "values" + gene.ENTREZ_GENE_ID AS "entrezGeneId", + genetic_alteration.`VALUES` AS "values" , @@ -94,8 +94,8 @@ SELECT - gene.ENTREZ_GENE_ID AS entrezGeneId, - genetic_alteration.VALUES AS "values", - genetic_profile.STABLE_ID AS molecularProfileId + gene.ENTREZ_GENE_ID AS "entrezGeneId", + genetic_alteration.`VALUES` AS "values", + genetic_profile.STABLE_ID AS "molecularProfileId" , @@ -128,7 +128,7 @@ NULL AS "values" - genetic_alteration.VALUES AS "values" + genetic_alteration.`VALUES` AS "values" FROM genetic_alteration INNER JOIN genetic_profile ON genetic_alteration.GENETIC_PROFILE_ID = genetic_profile.GENETIC_PROFILE_ID @@ -153,7 +153,7 @@ NULL AS "values" - genetic_alteration.VALUES AS "values" + genetic_alteration.`VALUES` AS "values" FROM genetic_alteration INNER JOIN genetic_profile ON genetic_alteration.GENETIC_PROFILE_ID = genetic_profile.GENETIC_PROFILE_ID @@ -183,7 +183,7 @@ NULL AS "values" - genetic_alteration.VALUES AS "values" + genetic_alteration.`VALUES` AS "values" FROM genetic_alteration INNER JOIN genetic_profile ON genetic_alteration.GENETIC_PROFILE_ID = genetic_profile.GENETIC_PROFILE_ID diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/MolecularProfileMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/MolecularProfileMapper.xml similarity index 99% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/MolecularProfileMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/MolecularProfileMapper.xml index 6ef0f9842c7..b51a2f9b5ab 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/MolecularProfileMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/MolecularProfileMapper.xml @@ -2,7 +2,6 @@ - genetic_profile.GENETIC_PROFILE_ID AS "${prefix}molecularProfileId", @@ -49,7 +48,7 @@ - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY genetic_profile.STABLE_ID ASC diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/MutationMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/MutationMapper.xml similarity index 87% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/MutationMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/MutationMapper.xml index 9f85171b615..bc74b1c98dc 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/MutationMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/MutationMapper.xml @@ -4,39 +4,39 @@ - genetic_profile.STABLE_ID AS molecularProfileId, - sample.STABLE_ID AS sampleId, - patient.STABLE_ID AS patientId, - mutation.ENTREZ_GENE_ID as entrezGeneId, - cancer_study.CANCER_STUDY_IDENTIFIER AS studyId + genetic_profile.STABLE_ID AS "molecularProfileId", + sample.STABLE_ID AS "sampleId", + patient.STABLE_ID AS "patientId", + mutation.ENTREZ_GENE_ID AS "entrezGeneId", + cancer_study.CANCER_STUDY_IDENTIFIER AS "studyId" , - mutation.CENTER AS center, - mutation.MUTATION_STATUS AS mutationStatus, - mutation.VALIDATION_STATUS AS validationStatus, - mutation.TUMOR_ALT_COUNT AS tumorAltCount, - mutation.TUMOR_REF_COUNT AS tumorRefCount, - mutation.NORMAL_ALT_COUNT AS normalAltCount, - mutation.NORMAL_REF_COUNT AS normalRefCount, - mutation.AMINO_ACID_CHANGE AS aminoAcidChange, - mutation_event.CHR as chr, - mutation_event.START_POSITION AS startPosition, - mutation_event.END_POSITION AS endPosition, - mutation_event.REFERENCE_ALLELE AS referenceAllele, - mutation_event.TUMOR_SEQ_ALLELE AS tumorSeqAllele, - mutation_event.PROTEIN_CHANGE AS proteinChange, - mutation_event.MUTATION_TYPE AS mutationType, - mutation_event.NCBI_BUILD AS ncbiBuild, - mutation_event.VARIANT_TYPE AS variantType, - mutation_event.REFSEQ_MRNA_ID AS refseqMrnaId, - mutation_event.PROTEIN_POS_START AS proteinPosStart, - mutation_event.PROTEIN_POS_END AS proteinPosEnd, - mutation_event.KEYWORD AS keyword, - mutation.ANNOTATION_JSON as annotationJSON, - alteration_driver_annotation.DRIVER_FILTER as driverFilter, - alteration_driver_annotation.DRIVER_FILTER_ANNOTATION as driverFilterAnnotation, - alteration_driver_annotation.DRIVER_TIERS_FILTER as driverTiersFilter, - alteration_driver_annotation.DRIVER_TIERS_FILTER_ANNOTATION as driverTiersFilterAnnotation + mutation.CENTER AS "center", + mutation.MUTATION_STATUS AS "mutationStatus", + mutation.VALIDATION_STATUS AS "validationStatus", + mutation.TUMOR_ALT_COUNT AS "tumorAltCount", + mutation.TUMOR_REF_COUNT AS "tumorRefCount", + mutation.NORMAL_ALT_COUNT AS "normalAltCount", + mutation.NORMAL_REF_COUNT AS "normalRefCount", + mutation.AMINO_ACID_CHANGE AS "aminoAcidChange", + mutation_event.CHR AS "chr", + mutation_event.START_POSITION AS "startPosition", + mutation_event.END_POSITION AS "endPosition", + mutation_event.REFERENCE_ALLELE AS "referenceAllele", + mutation_event.TUMOR_SEQ_ALLELE AS "tumorSeqAllele", + mutation_event.PROTEIN_CHANGE AS "proteinChange", + mutation_event.MUTATION_TYPE AS "mutationType", + mutation_event.NCBI_BUILD AS "ncbiBuild", + mutation_event.VARIANT_TYPE AS "variantType", + mutation_event.REFSEQ_MRNA_ID AS "refseqMrnaId", + mutation_event.PROTEIN_POS_START AS "proteinPosStart", + mutation_event.PROTEIN_POS_END AS "proteinPosEnd", + mutation_event.KEYWORD AS "keyword", + mutation.ANNOTATION_JSON AS "annotationJSON", + alteration_driver_annotation.DRIVER_FILTER AS "driverFilter", + alteration_driver_annotation.DRIVER_FILTER_ANNOTATION AS "driverFilterAnnotation", + alteration_driver_annotation.DRIVER_TIERS_FILTER AS "driverTiersFilter", + alteration_driver_annotation.DRIVER_TIERS_FILTER_ANNOTATION as "driverTiersFilterAnnotation" , @@ -52,7 +52,7 @@ - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY genetic_profile.STABLE_ID ASC, sample.STABLE_ID ASC, mutation.ENTREZ_GENE_ID ASC @@ -286,7 +286,7 @@ - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY genetic_profile.STABLE_ID ASC, sample.STABLE_ID ASC, mutation.ENTREZ_GENE_ID ASC @@ -298,8 +298,8 @@ SELECT - COUNT(*) AS totalCount, - COUNT(DISTINCT(mutation.SAMPLE_ID)) AS sampleCount + COUNT(*) AS "totalCount", + COUNT(DISTINCT(mutation.SAMPLE_ID)) AS "sampleCount" INNER JOIN mutation_event ON mutation.MUTATION_EVENT_ID = mutation_event.MUTATION_EVENT_ID @@ -342,8 +342,8 @@ SELECT - mutation.ENTREZ_GENE_ID AS entrezGeneId, - gene.HUGO_GENE_SYMBOL AS hugoGeneSymbol, - COUNT(*) AS totalCount, - COUNT(DISTINCT(mutation.SAMPLE_ID)) AS numberOfAlteredCases + mutation.ENTREZ_GENE_ID AS "entrezGeneId", + gene.HUGO_GENE_SYMBOL AS "hugoGeneSymbol", + COUNT(*) AS "totalCount", + COUNT(DISTINCT(mutation.SAMPLE_ID)) AS "numberOfAlteredCases" FROM mutation INNER JOIN mutation_event ON mutation_event.MUTATION_EVENT_ID = mutation.MUTATION_EVENT_ID INNER JOIN genetic_profile ON mutation.GENETIC_PROFILE_ID = genetic_profile.GENETIC_PROFILE_ID @@ -366,10 +366,10 @@ - + SELECT - COUNT(*) AS totalCount + COUNT(*) AS "totalCount" SELECT - TABLE_NAME AS tableName, - COALESCE(UPDATE_TIME, CREATE_TIME) AS updateTime + TABLE_NAME AS "tableName", + COALESCE(UPDATE_TIME, CREATE_TIME) AS "updateTime" FROM information_schema.tables WHERE TABLE_SCHEMA=#{dbName} diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/StructuralVariantMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/StructuralVariantMapper.xml similarity index 100% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/StructuralVariantMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/StructuralVariantMapper.xml diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/StudyMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/StudyMapper.xml similarity index 98% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/StudyMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/StudyMapper.xml index e79ba8c2ae5..76f7dfed0dd 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/StudyMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/StudyMapper.xml @@ -2,7 +2,6 @@ - cancer_study.CANCER_STUDY_ID AS "${prefix}cancerStudyId", @@ -22,6 +21,7 @@ + , COUNT(CASE WHEN sample_list.STABLE_ID = CONCAT(cancer_study.CANCER_STUDY_IDENTIFIER,'_sequenced') THEN 1 ELSE NULL END) AS sequencedSampleCount, @@ -34,7 +34,7 @@ COUNT(CASE WHEN sample_list.STABLE_ID = CONCAT(cancer_study.CANCER_STUDY_IDENTIFIER,'_rppa') THEN 1 ELSE NULL END) AS rppaSampleCount, COUNT(CASE WHEN sample_list.STABLE_ID = CONCAT(cancer_study.CANCER_STUDY_IDENTIFIER,'_protein_quantification') THEN 1 ELSE NULL END) AS massSpectrometrySampleCount, COUNT(CASE WHEN sample_list.STABLE_ID = CONCAT(cancer_study.CANCER_STUDY_IDENTIFIER,'_3way_complete') THEN 1 ELSE NULL END) AS completeSampleCount, - IFNULL(treatment.count, 0 ) as treatmentCount, + IFNULL(treatment.count, 0 ) as treatmentCount, @@ -95,7 +95,7 @@ GROUP BY cancer_study.CANCER_STUDY_ID - ORDER BY ${sortBy} ${direction} + ORDER BY "${sortBy}" ${direction} ORDER BY cancer_study.CANCER_STUDY_IDENTIFIER ASC diff --git a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/TreatmentMapper.xml b/src/main/resources/org/cbioportal/persistence/mybatis/TreatmentMapper.xml similarity index 99% rename from persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/TreatmentMapper.xml rename to src/main/resources/org/cbioportal/persistence/mybatis/TreatmentMapper.xml index de633ab7f55..58c93613077 100644 --- a/persistence/persistence-mybatis/src/main/resources/org/cbioportal/persistence/mybatis/TreatmentMapper.xml +++ b/src/main/resources/org/cbioportal/persistence/mybatis/TreatmentMapper.xml @@ -2,6 +2,7 @@ + SELECT genetic_profile.STABLE_ID AS molecularProfileId, diff --git a/src/main/resources/portal.properties.EXAMPLE b/src/main/resources/portal.properties.EXAMPLE index 35f21d3264d..dcb354c620a 100644 --- a/src/main/resources/portal.properties.EXAMPLE +++ b/src/main/resources/portal.properties.EXAMPLE @@ -1,11 +1,24 @@ # app name app.name=cbioportal +# Spring Properties + +spring.mvc.pathmatch.matching-strategy = ANT_PATH_MATCHER + # database -db.user=cbio_user -db.password=somepassword -db.driver=com.mysql.jdbc.Driver -db.connection_string=jdbc:mysql://localhost:3306/cbioportal?useSSL=false +spring.datasource.url=jdbc:mysql://localhost:3306/cbioportal?useSSL=false +spring.datasource.username=cbio +spring.datasource.password=P@ssword1 +spring.jpa.database-platform=org.hibernate.dialect.MySQL5InnoDBDialect +#spring.datasource.driver-class-name=com.mysql.cj.jdbc.Driver +spring.datasource.driver-class-name=com.mysql.jdbc.Driver + +# this should normally be set to false. In some cases you could set this to true (e.g. for testing a feature of a newer release that is not related to the schema change in expected db version above): +db.suppress_schema_version_mismatch_errors=false + +# authentication +authenticate=saml + # set tomcat_resource_name when using dbconnector=jndi instead of the default # dbconnector=dbcp. Note that dbconnector needs to be set in CATLINA_OPTS when # using Tomcat (CATALINA_OPTS="-Ddbconnector=jndi"). It does not get picked up @@ -14,9 +27,6 @@ db.connection_string=jdbc:mysql://localhost:3306/cbioportal?useSSL=false # # db.tomcat_resource_name=jdbc/cbioportal -# this should normally be set to false. In some cases you could set this to true (e.g. for testing a feature of a newer release that is not related to the schema change in expected db version above): -db.suppress_schema_version_mismatch_errors=false - # web page cosmetics skin.title=cBioPortal for Cancer Genomics skin.email_contact=cbioportal at googlegroups dot com @@ -80,9 +90,6 @@ skin.right_nav.show_whats_new=true # settings controlling what to show in the right navigation bar skin.study_view.link_text=To build your own case set, try out our enhanced Study View. -# setting controlling whether to show the structural variants table widget on study view -skin.study_view.show_sv_table=false - # setting controlling the default setting for filtering genes in patient view # skin.patientview.filter_genes_profiled_all_samples=false @@ -141,6 +148,56 @@ microsoftlive.consumer.key= microsoftlive.consumer.secret= ## SAML settings +# TODO add options for auto- and manual config to docs +# TODO add to docs: metadata-uri can be both URL or metadata xml file +# Providing the SAML2 IDP metadata is sufficient to autoconfigure the provider. The 'metadata-uri' property can point to +# and HTTP endpoint or a metadata xml file on the file system. +#spring.security.saml2.relyingparty.registration.cbio-idp.identityprovider.metadata-uri=classpath:/client-tailored-saml-idp-metadata.xml +spring.security.saml2.relyingparty.registration.cbio-idp.identityprovider.metadata-uri=http://localhost:8082/auth/realms/cbio/protocol/saml/descriptor +spring.security.saml2.relyingparty.registration.cbio-idp.identityprovider.entity-id=http://localhost:8082/auth/realms/cbio +spring.security.saml2.relyingparty.registration.cbio-idp.entity-id=cbioportal +spring.security.saml2.relyingparty.registration.cbio-idp.signing.credentials[0].certificate-location=classpath:/cert.pem +spring.security.saml2.relyingparty.registration.cbio-idp.signing.credentials[0].private-key-location=classpath:/key.pem + +saml.idp.metadata.attribute.email= +saml.idp.metadata.attribute.role= +# TODO document: 'When true, study roles will be retrieved from the cBioPortal database and added to the roles provided by the IDP (default 'false').' +saml.roles-from-database= + +# Change this to configure to configure a custom logout URL: (default: /saml/logout) +saml.logout.url=/saml/logout + +# OAuth2 settings +# Provider information +# A number of wel known IDP are supported as preconfigured CommonOAuth2Providers. +# See: https://docs.spring.io/spring-security/site/docs/5.5.x/reference/html5/#oauth2login-common-oauth2-provider +# For custom IDPs see: https://docs.spring.io/spring-security/site/docs/5.5.x/reference/html5/#oauth2login-custom-provider-properties + +# For OAuth2 Client/Login +# TODO add options for auto- and manual config to docs +# For OIDC clients the issuer-uri is sufficient to autoconfigure the provider (via .well-known endpoint) +spring.security.oauth2.client.provider.cbio-idp.issuer-uri= +spring.security.oauth2.client.provider.cbio-idp.user-name-attribute= +# Configuring the individual settings below is not recommended. + # spring.security.oauth2.client.provider.cbio-idp.authorization-uri= + # spring.security.oauth2.client.provider.cbio-idp.token-uri= + # TODO update docs, the user info endpoint must expose the roles !! + # spring.security.oauth2.client.provider.cbio-idp.user-info-uri= + # spring.security.oauth2.client.provider.cbio-idp.jwk-set-uri= + # spring.security.oauth2.client.provider.cbio-idp.logout-uri= # NOTE: this is not an official property. +spring.security.oauth2.client.registration.cbio-idp.client-id= +spring.security.oauth2.client.registration.cbio-idp.client-secret= +# TODO Can be authorization_code, ... +spring.security.oauth2.client.registration.cbio-idp.authorization-grant-type= +# TODO Can be client_secret_post, ... +spring.security.oauth2.client.registration.cbio-idp.client-authentication-method= +spring.security.oauth2.client.registration.cbio-idp.redirect-uri=/login/oauth2/authorization/ +# Scope must include 'oidc' for SSO logout to work. +spring.security.oauth2.client.registration.cbio-idp.scope=oidc,email,roles +# TODO add to docs (in minutes; default 1) +spring.security.oauth2.allowed-clock-skew= +# TODO add to docs +spring.security.oauth2.logout-url= saml.sp.metadata.entityid= # change this url if behind reverse proxy that handles SSL, see docs/Authenticating-Users-via-SAML.md saml.sp.metadata.entitybaseurl=#{null} diff --git a/src/main/resources/security.properties.EXAMPLE b/src/main/resources/security.properties.EXAMPLE new file mode 100644 index 00000000000..fdedb60d6bb --- /dev/null +++ b/src/main/resources/security.properties.EXAMPLE @@ -0,0 +1,83 @@ + +# authentication (available options: [false, oauth2, optional_oauth2, saml]) +authenticate=false + +# For OAuth2 Client/Login +## Example to use just Google for Optional OAuth2 +#spring.security.oauth2.client.registration.google.clientId= +#spring.security.oauth2.client.registration.google.clientSecret= + +# TODO add options for auto- and manual config to docs +# For OIDC clients the issuer-uri is sufficient to autoconfigure the provider (via .well-known endpoint) +# TODO add to docs + +## Role Path Client ID. JWT Role Path should be resource_access:client-id:roles +#spring.security.oauth2.roles-path.client-id= + +# change this url if behind reverse proxy that handles SSL, see docs/Authenticating-Users-via-SAML.md +#spring.security.oauth2.client.provider.cbio-idp.issuer-uri=http://localhost:8080/realms/cbioportal +#spring.security.oauth2.client.provider.cbio-idp.user-name-attribute=email +## Configuring the individual settings below is not recommended. + # spring.security.oauth2.client.provider.cbio-idp.authorization-uri= + # spring.security.oauth2.client.provider.cbio-idp.token-uri= + # TODO update docs, the user info endpoint must expose the roles !! + # spring.security.oauth2.client.provider.cbio-idp.user-info-uri= + # spring.security.oauth2.client.provider.cbio-idp.jwk-set-uri= + # spring.security.oauth2.client.provider.cbio-idp.logout-uri= # NOTE: this is not an official property. + +#spring.security.oauth2.client.registration.cbio-idp.client-id= +#spring.security.oauth2.client.registration.cbio-idp.client-secret= + +# TODO Can be authorization_code, ... +#spring.security.oauth2.client.registration.cbio-idp.authorization-grant-type= +# TODO Can be client_secret_post, ... +#spring.security.oauth2.client.registration.cbio-idp.client-authentication-method= +#spring.security.oauth2.client.registration.cbio-idp.redirect-uri=/login/oauth2/authorization/ +# Scope must include 'oidc' for SSO logout to work. +# Required Scopes [openid, email, roles] +#spring.security.oauth2.client.registration.cbio-idp.scope=openid,email,roles + +# For SAML 2.0 +## SAML settings +# TODO add options for auto- and manual config to docs +# TODO add to docs: metadata-uri can be both URL or metadata xml file +# Providing the SAML2 IDP metadata is sufficient to autoconfigure the provider. The 'metadata-uri' property can point to +# and HTTP endpoint or a metadata xml file on the file system. +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.assertingparty.metadata-uri=classpath:/client-tailored-saml-idp-metadata.xml +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.assertingparty.metadata-uri=http://localhost:8080/realms/cbioportal/protocol/saml/descriptor +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.entity-id=cbioportal-saml +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.signing.credentials[0].certificate-location=classpath:/local.crt +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.signing.credentials[0].private-key-location=classpath:/local.key +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.singlelogout.binding=POST +#spring.security.saml2.relyingparty.registration.cbio-saml-idp.singlelogout.response-url=http://localhost:8080/logout/saml2/slo +# TODO add to docs (in minutes; default 1) +spring.security.oauth2.allowed-clock-skew= + +## data access token settings +## Resource Server issuer-uri for Data Access Token +#spring.security.oauth2.resourceserver.jwt.issuer-uri=http://localhost:8080/realms/cbioportal +# TODO: Currently Dat.method has only been tested with oauth2 +dat.unauth_users= +dat.method=none +dat.ttl_seconds=2592000 +dat.uuid.max_number_per_user=1 +dat.jwt.secret_key= +dat.filter_user_role= + +# OAuth2 token data access settings (If using OAuth2 for Login can copy setting here) +## TODO: Reuse OAUTH2 Spring settings defined above +#dat.oauth2.clientId= +#dat.oauth2.clientSecret= +#dat.oauth2.issuer= +#dat.oauth2.accessTokenUri=/.../token +#dat.oauth2.userAuthorizationUri=/.../auth +#dat.oauth2.jwkUrl=/.../certs +#dat.oauth2.redirectUri=/.../api/data-access-token/oauth2 + +## Authorization +## study view settings +## always show studies with this group +always_show_study_group=PUBLIC +## Should the permissions for groups and users be filtered by this instance's app.name? +## (true means the system only handles "CBIOPORTAL:someGroupPermission" groups, false means "someGroupPermission" works) +filter_groups_by_appname=false \ No newline at end of file diff --git a/portal/src/main/webapp/content/release_note_mutation_mapper.html b/src/main/resources/templates/config_service.html similarity index 100% rename from portal/src/main/webapp/content/release_note_mutation_mapper.html rename to src/main/resources/templates/config_service.html diff --git a/portal/src/main/webapp/error.html b/src/main/resources/templates/error.html similarity index 100% rename from portal/src/main/webapp/error.html rename to src/main/resources/templates/error.html diff --git a/src/main/resources/templates/footer.html b/src/main/resources/templates/footer.html new file mode 100644 index 00000000000..c6eaf8c0fe6 --- /dev/null +++ b/src/main/resources/templates/footer.html @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/src/main/resources/templates/index.html b/src/main/resources/templates/index.html new file mode 100644 index 00000000000..34cb24cc2f3 --- /dev/null +++ b/src/main/resources/templates/index.html @@ -0,0 +1,80 @@ + + + + + + + cBioPortal for Cancer Genomics + + + + + + + +
    + + + + + + + + +
    + + + diff --git a/src/main/resources/templates/login.html b/src/main/resources/templates/login.html new file mode 100644 index 00000000000..58f4a63201b --- /dev/null +++ b/src/main/resources/templates/login.html @@ -0,0 +1,98 @@ + + + + + + + +
    +
    + + + + + + + + + + + + + +
    +
    +
    + +
    +
    +
    + +
    +

    + + You are now signed out. It is recommended that you close your browser to complete the termination of + this session. +

    + +
    + +
    +

    + + You are not authorized to access this resource.  + +

    +
    + + + + + + + + + + + +
    +

    + + + +

    +
    + + + +
    +

    + +

    +
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    +
    + + \ No newline at end of file diff --git a/src/main/resources/templates/login_options.html b/src/main/resources/templates/login_options.html new file mode 100644 index 00000000000..5bf84292873 --- /dev/null +++ b/src/main/resources/templates/login_options.html @@ -0,0 +1,56 @@ + + + + +
    +

    + +

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    + +
    +

    + +

    + +
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    + +

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    + + + + \ No newline at end of file diff --git a/src/main/resources/templates/tracking_include.html b/src/main/resources/templates/tracking_include.html new file mode 100644 index 00000000000..6c0f1070639 --- /dev/null +++ b/src/main/resources/templates/tracking_include.html @@ -0,0 +1,6 @@ + diff --git a/portal/src/main/resources/tutorials/getting_started.pptx b/src/main/resources/tutorials/getting_started.pptx similarity index 100% rename from portal/src/main/resources/tutorials/getting_started.pptx rename to src/main/resources/tutorials/getting_started.pptx diff --git a/portal/src/main/resources/tutorials/network_view.pptx b/src/main/resources/tutorials/network_view.pptx similarity index 100% rename from portal/src/main/resources/tutorials/network_view.pptx rename to src/main/resources/tutorials/network_view.pptx diff --git a/portal/src/main/webapp/Data/data_clinical.json b/src/main/resources/webapp/Data/data_clinical.json similarity index 96% rename from portal/src/main/webapp/Data/data_clinical.json rename to src/main/resources/webapp/Data/data_clinical.json index 0bba2bbdc72..509d99b216f 100644 --- a/portal/src/main/webapp/Data/data_clinical.json +++ b/src/main/resources/webapp/Data/data_clinical.json @@ -1,9700 +1,9700 @@ -[ - { - "CASE_ID":"TCGA-A5-A0G1", - "SUBTYPE":"NA", - "AGE":67, - "TUMOR_STAGE_2009":"Stage I", - "HISTOLOGY":"Serous", - "TUMOR_GRADE":"Grade 3", - "MSI_STATUS_7_MARKER_CALL":"MSI-H", - "MSI_STATUS_5_MARKER_CALL":"MSI-H", - "DATA_MAF":"N", - "DATA_GISTIC":"Y", - "DATA_RNASEQ":"Y", - "DATA_CORE_SAMPLE":"N", - "MRNA_EXPRESSION_CLUSTER":"3", - "METHYLATION_CLUSTER":4, - "MLH1_SILENCING":"0", - "CNA_CLUSTER_K4":"1", - "MUTATION_RATE_CLUSTER":"NA", - "MICRO_RNA_CLUSTER":"4", - "MICRO_RNA_SCORE":"0.891767554", - "CASE_ID":"TCGA-A5-A0G1", - "OS_STATUS":"1:DECEASED", - "OS_MONTHS":"106.8113163", - "DFS_STATUS":"0:DiseaseFree", - "DFS_MONTHS":"106.8113163" - }, - { - "CASE_ID":"TCGA-A5-A0G2", - "SUBTYPE":"NA", - "AGE":57, - "TUMOR_STAGE_2009":"Stage III", - "HISTOLOGY":"Serous", - "TUMOR_GRADE":"Grade 3", - "MSI_STATUS_7_MARKER_CALL":"MSI-L", - "MSI_STATUS_5_MARKER_CALL":"MSI-L", - "DATA_MAF":"N", - "DATA_GISTIC":"Y", - "DATA_RNASEQ":"Y", - "DATA_CORE_SAMPLE":"N", - "MRNA_EXPRESSION_CLUSTER":"1", - "METHYLATION_CLUSTER":1, - "MLH1_SILENCING":"1", - "CNA_CLUSTER_K4":"4", - "MUTATION_RATE_CLUSTER":"NA", - "MICRO_RNA_CLUSTER":"4", - "MICRO_RNA_SCORE":"0.882469449", - "CASE_ID":"TCGA-A5-A0G2", - "OS_STATUS":"", - "OS_MONTHS":"NA", - "DFS_STATUS":"", - "DFS_MONTHS":"NA" - }, - { - "CASE_ID":"TCGA-A5-A0G3", - "SUBTYPE":"NA", - "AGE":61, - "TUMOR_STAGE_2009":"Stage III", - "HISTOLOGY":"Serous", - "TUMOR_GRADE":"Grade 3", - "MSI_STATUS_7_MARKER_CALL":"MSS", - "MSI_STATUS_5_MARKER_CALL":"MSS", - "DATA_MAF":"Y", - "DATA_GISTIC":"N", - "DATA_RNASEQ":"Y", - "DATA_CORE_SAMPLE":"N", - "MRNA_EXPRESSION_CLUSTER":"1", - "METHYLATION_CLUSTER":3, - "MLH1_SILENCING":"0", - "CNA_CLUSTER_K4":"NA", - "MUTATION_RATE_CLUSTER":"1_LOW", - "MICRO_RNA_CLUSTER":"4", - "MICRO_RNA_SCORE":"0.877287726", - "CASE_ID":"TCGA-A5-A0G3", - "OS_STATUS":"0:LIVING", - "OS_MONTHS":"46.91681319", - "DFS_STATUS":"Recurred", - "DFS_MONTHS":"26.1196544" - }, - { - "CASE_ID":"TCGA-A5-A0G5", - "SUBTYPE":"Copy-number high (Serous-like)", - "AGE":73, - "TUMOR_STAGE_2009":"Stage I", - "HISTOLOGY":"Serous", - "TUMOR_GRADE":"Grade 3", - "MSI_STATUS_7_MARKER_CALL":"MSI-L", - "MSI_STATUS_5_MARKER_CALL":"MSI-L", - "DATA_MAF":"Y", - "DATA_GISTIC":"Y", - "DATA_RNASEQ":"Y", - "DATA_CORE_SAMPLE":"Y", - "MRNA_EXPRESSION_CLUSTER":"1", - "METHYLATION_CLUSTER":2, - "MLH1_SILENCING":"0", - "CNA_CLUSTER_K4":"4", - "MUTATION_RATE_CLUSTER":"1_LOW", - "MICRO_RNA_CLUSTER":"4", - "MICRO_RNA_SCORE":"0.886489497", - "CASE_ID":"TCGA-A5-A0G5", - "OS_STATUS":"0:LIVING", - "OS_MONTHS":"36.99463001", - "DFS_STATUS":"0:DiseaseFree", - "DFS_MONTHS":"36.99463001" - }, - { - "CASE_ID":"TCGA-A5-A0G9", - "SUBTYPE":"MSI (Hyper-mutated)", - 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"CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"6", + "MICRO_RNA_SCORE":"0.936182815", + "CASE_ID":"TCGA-EY-A214", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"14.39045111", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"14.39045111" + }, + { + "CASE_ID":"TCGA-EY-A215", + "SUBTYPE":"NA", + "AGE":60, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSI-H", + "MSI_STATUS_5_MARKER_CALL":"MSI-H", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"N", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"NA", + "METHYLATION_CLUSTER":1, + "MLH1_SILENCING":"1", + "CNA_CLUSTER_K4":"2", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"6", + "MICRO_RNA_SCORE":"0.936182815", + "CASE_ID":"TCGA-EY-A215", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"18.85871903", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"18.85871903" + }, + { + "CASE_ID":"TCGA-FI-A2CX", + "SUBTYPE":"NA", + "AGE":82, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"2", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"4", + "MICRO_RNA_SCORE":"0.923555802", + "CASE_ID":"TCGA-FI-A2CX", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"39.98442693", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"39.98442693" + }, + { + "CASE_ID":"TCGA-FI-A2CY", + "SUBTYPE":"NA", + "AGE":60, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Mixed", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"4", + "MICRO_RNA_SCORE":"0.921856623", + "CASE_ID":"TCGA-FI-A2CY", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"34.95762552", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"34.95762552" + }, + { + "CASE_ID":"TCGA-FI-A2D0", + "SUBTYPE":"NA", + "AGE":55, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSI-H", + "MSI_STATUS_5_MARKER_CALL":"MSI-H", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":4, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"1", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"4", + "MICRO_RNA_SCORE":"0.923555802", + "CASE_ID":"TCGA-FI-A2D0", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"33.97197818", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"33.97197818" + }, + { + "CASE_ID":"TCGA-FI-A2D2", + "SUBTYPE":"Copy-number high (Serous-like)", + "AGE":66, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Mixed", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"Y", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"Y", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"1_LOW", + "MICRO_RNA_CLUSTER":"4", + "MICRO_RNA_SCORE":"0.853878533", + "CASE_ID":"TCGA-FI-A2D2", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"35.97612776", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"35.97612776" + }, + { + "CASE_ID":"TCGA-FI-A2D4", + "SUBTYPE":"NA", + "AGE":44, + "TUMOR_STAGE_2009":"Stage III", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSI-H", + "MSI_STATUS_5_MARKER_CALL":"MSI-H", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":1, + "MLH1_SILENCING":"1", + "CNA_CLUSTER_K4":"2", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"3", + "MICRO_RNA_SCORE":"0.897648505", + "CASE_ID":"TCGA-FI-A2D4", + "OS_STATUS":"1:DECEASED", + "OS_MONTHS":"7.95088851", + "DFS_STATUS":"Recurred", + "DFS_MONTHS":"NA" + }, + { + "CASE_ID":"TCGA-FI-A2D5", + "SUBTYPE":"NA", + "AGE":56, + "TUMOR_STAGE_2009":"Stage IV", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":4, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"1", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"2", + "MICRO_RNA_SCORE":"0.912165907", + "CASE_ID":"TCGA-FI-A2D5", + "OS_STATUS":"1:DECEASED", + "OS_MONTHS":"13.99619217", + "DFS_STATUS":"Recurred", + "DFS_MONTHS":"NA" + }, + { + "CASE_ID":"TCGA-FI-A2D6", + "SUBTYPE":"NA", + "AGE":74, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSI-H", + "MSI_STATUS_5_MARKER_CALL":"MSI-H", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":1, + "MLH1_SILENCING":"1", + "CNA_CLUSTER_K4":"2", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"1", + "MICRO_RNA_SCORE":"0.739874405", + "CASE_ID":"TCGA-FI-A2D6", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"8.969390758", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"8.969390758" + }, + { + "CASE_ID":"TCGA-FI-A2EU", + "SUBTYPE":"NA", + "AGE":68, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Serous", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"4", + "MICRO_RNA_SCORE":"0.923555802", + "CASE_ID":"TCGA-FI-A2EU", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"84.01000794", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"84.01000794" + }, + { + "CASE_ID":"TCGA-FI-A2EW", + "SUBTYPE":"Copy-number high (Serous-like)", + "AGE":71, + "TUMOR_STAGE_2009":"Stage II", + "HISTOLOGY":"Serous", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"Indeterminant", + "MSI_STATUS_5_MARKER_CALL":"Indeterminant", + "DATA_MAF":"Y", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"Y", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"1_LOW", + "MICRO_RNA_CLUSTER":"4", + "MICRO_RNA_SCORE":"0.886489497", + "CASE_ID":"TCGA-FI-A2EW", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"58.9745656", + "DFS_STATUS":"Recurred", + "DFS_MONTHS":"NA" + }, + { + "CASE_ID":"TCGA-FI-A2EX", + "SUBTYPE":"Copy-number high (Serous-like)", + "AGE":58, + "TUMOR_STAGE_2009":"Stage III", + "HISTOLOGY":"Serous", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"Y", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"Y", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"1_LOW", + "MICRO_RNA_CLUSTER":"4", + "MICRO_RNA_SCORE":"0.886489497", + "CASE_ID":"TCGA-FI-A2EX", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"9.067955491", + "DFS_STATUS":"Recurred", + "DFS_MONTHS":"NA" + }, + { + "CASE_ID":"TCGA-FI-A2F4", + "SUBTYPE":"NA", + "AGE":64, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSI-H", + "MSI_STATUS_5_MARKER_CALL":"MSI-H", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"2", + "METHYLATION_CLUSTER":1, + "MLH1_SILENCING":"1", + "CNA_CLUSTER_K4":"3", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"6", + "MICRO_RNA_SCORE":"0.936182815", + "CASE_ID":"TCGA-FI-A2F4", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"28.91232186", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"28.91232186" + }, + { + "CASE_ID":"TCGA-FI-A2F8", + "SUBTYPE":"Copy-number high (Serous-like)", + "AGE":64, + "TUMOR_STAGE_2009":"Stage II", + "HISTOLOGY":"Serous", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"Y", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"Y", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"1_LOW", + "MICRO_RNA_CLUSTER":"6", + "MICRO_RNA_SCORE":"0.936182815", + "CASE_ID":"TCGA-FI-A2F8", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"25.00258742", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"25.00258742" + }, + { + "CASE_ID":"TCGA-FI-A2F9", + "SUBTYPE":"NA", + "AGE":79, + "TUMOR_STAGE_2009":"Stage I", + "HISTOLOGY":"Endometrioid", + "TUMOR_GRADE":"Grade 3", + "MSI_STATUS_7_MARKER_CALL":"MSS", + "MSI_STATUS_5_MARKER_CALL":"MSS", + "DATA_MAF":"N", + "DATA_GISTIC":"Y", + "DATA_RNASEQ":"Y", + "DATA_CORE_SAMPLE":"N", + "MRNA_EXPRESSION_CLUSTER":"1", + "METHYLATION_CLUSTER":3, + "MLH1_SILENCING":"0", + "CNA_CLUSTER_K4":"4", + "MUTATION_RATE_CLUSTER":"NA", + "MICRO_RNA_CLUSTER":"6", + "MICRO_RNA_SCORE":"-0.061109725", + "CASE_ID":"TCGA-FI-A2F9", + "OS_STATUS":"0:LIVING", + "OS_MONTHS":"25.98823476", + "DFS_STATUS":"0:DiseaseFree", + "DFS_MONTHS":"25.98823476" + } ] \ No newline at end of file diff --git a/portal/src/main/webapp/config_service.jsp b/src/main/resources/webapp/config_service.jsp similarity index 87% rename from portal/src/main/webapp/config_service.jsp rename to src/main/resources/webapp/config_service.jsp index e6b0ae33495..d2b1ce2bee9 100644 --- a/portal/src/main/webapp/config_service.jsp +++ b/src/main/resources/webapp/config_service.jsp @@ -1,28 +1,3 @@ -<%@ page import="org.apache.commons.lang3.StringUtils" %> -<%@ page import="org.mskcc.cbio.portal.servlet.CheckDarwinAccessServlet" %> -<%@ page import="org.mskcc.cbio.portal.util.GlobalProperties" %> -<%@ page import="org.json.simple.JSONArray" %> -<%@ page import="org.json.simple.JSONObject" %> - -// an empty string means the property is listed but not assigned to in portal.props -// a null value means it was entirely missing - -// this jsp can either be included in index.jsp or called as a jsonp service (by decoupled frontends not using jsps) -// if there is a callback url param, we respond as jsonp callback(data), otherwise, we assign to variable - -<% - String callback = request.getParameter("callback"); - - // this is to avoid CORB blocking when jsonp is called across domain - if (callback != null) { - response.setContentType("text/javascript; charset=UTF-8"); - } - -%> - -<%= (callback==null ? "window.rawServerConfig = " : "callback" ) %>( - - <% // Set API root variable for cbioportal-frontend repo String currentUrl = request.getRequestURL().toString(); String baseURL = currentUrl.substring(0, currentUrl.length() - request.getRequestURI().length()) + request.getContextPath(); @@ -206,9 +181,9 @@ obj.put("oncoprintOncoKbHotspotsDefault",enableOncoKBandHotspots); - obj.put("oncoKbTokenDefined", !StringUtils.isEmpty(GlobalProperties.getOncoKbToken())); + obj.put("oncoKbTokenDefined", !ObjectUtils.isEmpty(GlobalProperties.getOncoKbToken())); - obj.put("sessionServiceEnabled", !StringUtils.isEmpty(GlobalProperties.getSessionServiceUrl())); + obj.put("sessionServiceEnabled", !ObjectUtils.isEmpty(GlobalProperties.getSessionServiceUrl())); obj.put("skin_hide_download_controls", GlobalProperties.getDownloadControl()); diff --git a/portal/src/main/webapp/content/README.txt b/src/main/resources/webapp/content/README.txt similarity index 100% rename from portal/src/main/webapp/content/README.txt rename to src/main/resources/webapp/content/README.txt diff --git a/portal/src/main/webapp/content/about_us.html b/src/main/resources/webapp/content/about_us.html similarity index 100% rename from portal/src/main/webapp/content/about_us.html rename to src/main/resources/webapp/content/about_us.html diff --git a/portal/src/main/webapp/content/about_us_prostate.html b/src/main/resources/webapp/content/about_us_prostate.html similarity index 100% rename from portal/src/main/webapp/content/about_us_prostate.html rename to src/main/resources/webapp/content/about_us_prostate.html diff --git a/portal/src/main/webapp/content/about_us_su2c.html b/src/main/resources/webapp/content/about_us_su2c.html similarity index 100% rename from portal/src/main/webapp/content/about_us_su2c.html rename to src/main/resources/webapp/content/about_us_su2c.html diff --git a/portal/src/main/webapp/content/about_us_target.html b/src/main/resources/webapp/content/about_us_target.html similarity index 100% rename from portal/src/main/webapp/content/about_us_target.html rename to src/main/resources/webapp/content/about_us_target.html diff --git a/portal/src/main/webapp/content/cgds_r.html b/src/main/resources/webapp/content/cgds_r.html similarity index 100% rename from portal/src/main/webapp/content/cgds_r.html rename to src/main/resources/webapp/content/cgds_r.html diff --git a/portal/src/main/webapp/content/data_sets.html b/src/main/resources/webapp/content/data_sets.html similarity index 100% rename from portal/src/main/webapp/content/data_sets.html rename to src/main/resources/webapp/content/data_sets.html diff --git a/portal/src/main/webapp/content/faq.html b/src/main/resources/webapp/content/faq.html similarity index 100% rename from portal/src/main/webapp/content/faq.html rename to src/main/resources/webapp/content/faq.html diff --git a/portal/src/main/webapp/content/faq_prostate.html b/src/main/resources/webapp/content/faq_prostate.html similarity index 100% rename from portal/src/main/webapp/content/faq_prostate.html rename to src/main/resources/webapp/content/faq_prostate.html diff --git a/portal/src/main/webapp/content/faq_su2c.html b/src/main/resources/webapp/content/faq_su2c.html similarity index 100% rename from portal/src/main/webapp/content/faq_su2c.html rename to src/main/resources/webapp/content/faq_su2c.html diff --git a/portal/src/main/webapp/content/faq_target.html b/src/main/resources/webapp/content/faq_target.html similarity index 100% rename from portal/src/main/webapp/content/faq_target.html rename to src/main/resources/webapp/content/faq_target.html diff --git a/portal/src/main/webapp/content/faq_tcga.html b/src/main/resources/webapp/content/faq_tcga.html similarity index 100% rename from portal/src/main/webapp/content/faq_tcga.html rename to src/main/resources/webapp/content/faq_tcga.html diff --git a/portal/src/main/webapp/content/networks.html b/src/main/resources/webapp/content/networks.html similarity index 100% rename from portal/src/main/webapp/content/networks.html rename to src/main/resources/webapp/content/networks.html diff --git a/portal/src/main/webapp/content/news.html b/src/main/resources/webapp/content/news.html similarity index 100% rename from portal/src/main/webapp/content/news.html rename to src/main/resources/webapp/content/news.html diff --git a/portal/src/main/webapp/content/news_genie.html b/src/main/resources/webapp/content/news_genie.html similarity index 100% rename from portal/src/main/webapp/content/news_genie.html rename to src/main/resources/webapp/content/news_genie.html diff --git a/portal/src/main/webapp/content/news_prostate.html b/src/main/resources/webapp/content/news_prostate.html similarity index 100% rename from portal/src/main/webapp/content/news_prostate.html rename to src/main/resources/webapp/content/news_prostate.html diff --git a/portal/src/main/webapp/content/news_su2c.html b/src/main/resources/webapp/content/news_su2c.html similarity index 100% rename from portal/src/main/webapp/content/news_su2c.html rename to src/main/resources/webapp/content/news_su2c.html diff --git a/portal/src/main/webapp/content/news_target.html b/src/main/resources/webapp/content/news_target.html similarity index 100% rename from portal/src/main/webapp/content/news_target.html rename to src/main/resources/webapp/content/news_target.html diff --git a/portal/src/main/webapp/content/news_tcga.html b/src/main/resources/webapp/content/news_tcga.html similarity index 100% rename from portal/src/main/webapp/content/news_tcga.html rename to src/main/resources/webapp/content/news_tcga.html diff --git a/portal/src/main/webapp/content/onco_spec_lang_desc.html b/src/main/resources/webapp/content/onco_spec_lang_desc.html similarity index 100% rename from portal/src/main/webapp/content/onco_spec_lang_desc.html rename to src/main/resources/webapp/content/onco_spec_lang_desc.html diff --git a/portal/src/main/webapp/content/release_note_oncoprinter.html b/src/main/resources/webapp/content/release_note_mutation_mapper.html similarity index 100% rename from portal/src/main/webapp/content/release_note_oncoprinter.html rename to src/main/resources/webapp/content/release_note_mutation_mapper.html diff --git a/src/main/resources/webapp/content/release_note_oncoprinter.html b/src/main/resources/webapp/content/release_note_oncoprinter.html new file mode 100644 index 00000000000..e69de29bb2d diff --git a/portal/src/main/webapp/content/release_notes_mutation_mapper.html b/src/main/resources/webapp/content/release_notes_mutation_mapper.html similarity index 100% rename from portal/src/main/webapp/content/release_notes_mutation_mapper.html rename to src/main/resources/webapp/content/release_notes_mutation_mapper.html diff --git a/portal/src/main/webapp/content/release_notes_oncoprinter.html b/src/main/resources/webapp/content/release_notes_oncoprinter.html similarity index 100% rename from portal/src/main/webapp/content/release_notes_oncoprinter.html rename to src/main/resources/webapp/content/release_notes_oncoprinter.html diff --git a/portal/src/main/webapp/content/visualize_your_data.html b/src/main/resources/webapp/content/visualize_your_data.html similarity index 100% rename from portal/src/main/webapp/content/visualize_your_data.html rename to src/main/resources/webapp/content/visualize_your_data.html diff --git a/portal/src/main/webapp/content/web_api.html b/src/main/resources/webapp/content/web_api.html similarity index 100% rename from portal/src/main/webapp/content/web_api.html rename to src/main/resources/webapp/content/web_api.html diff --git a/src/main/resources/webapp/error.html b/src/main/resources/webapp/error.html new file mode 100644 index 00000000000..c47d63ada36 --- /dev/null +++ b/src/main/resources/webapp/error.html @@ -0,0 +1,13 @@ + + + + + +
    +

    + Error 400: Invalid Request +

    +
    + + + \ No newline at end of file diff --git a/portal/src/main/webapp/fonts/FontAwesome.otf b/src/main/resources/webapp/fonts/FontAwesome.otf similarity index 100% rename from portal/src/main/webapp/fonts/FontAwesome.otf rename to src/main/resources/webapp/fonts/FontAwesome.otf diff --git a/portal/src/main/webapp/fonts/fontawesome-webfont.eot b/src/main/resources/webapp/fonts/fontawesome-webfont.eot similarity index 100% rename from portal/src/main/webapp/fonts/fontawesome-webfont.eot rename to src/main/resources/webapp/fonts/fontawesome-webfont.eot diff --git a/portal/src/main/webapp/fonts/fontawesome-webfont.svg b/src/main/resources/webapp/fonts/fontawesome-webfont.svg similarity index 100% rename from portal/src/main/webapp/fonts/fontawesome-webfont.svg rename to src/main/resources/webapp/fonts/fontawesome-webfont.svg diff --git a/portal/src/main/webapp/fonts/fontawesome-webfont.ttf b/src/main/resources/webapp/fonts/fontawesome-webfont.ttf similarity index 100% rename from portal/src/main/webapp/fonts/fontawesome-webfont.ttf rename to src/main/resources/webapp/fonts/fontawesome-webfont.ttf diff --git a/portal/src/main/webapp/fonts/fontawesome-webfont.woff b/src/main/resources/webapp/fonts/fontawesome-webfont.woff similarity index 100% rename from portal/src/main/webapp/fonts/fontawesome-webfont.woff rename to src/main/resources/webapp/fonts/fontawesome-webfont.woff diff --git a/portal/src/main/webapp/fonts/fontawesome-webfont.woff2 b/src/main/resources/webapp/fonts/fontawesome-webfont.woff2 similarity index 100% rename from portal/src/main/webapp/fonts/fontawesome-webfont.woff2 rename to src/main/resources/webapp/fonts/fontawesome-webfont.woff2 diff --git a/portal/src/main/webapp/fonts/glyphicons-halflings-regular.eot b/src/main/resources/webapp/fonts/glyphicons-halflings-regular.eot similarity index 100% rename from portal/src/main/webapp/fonts/glyphicons-halflings-regular.eot rename to src/main/resources/webapp/fonts/glyphicons-halflings-regular.eot diff --git a/portal/src/main/webapp/fonts/glyphicons-halflings-regular.svg b/src/main/resources/webapp/fonts/glyphicons-halflings-regular.svg similarity index 100% rename from portal/src/main/webapp/fonts/glyphicons-halflings-regular.svg rename to src/main/resources/webapp/fonts/glyphicons-halflings-regular.svg diff --git a/portal/src/main/webapp/fonts/glyphicons-halflings-regular.ttf b/src/main/resources/webapp/fonts/glyphicons-halflings-regular.ttf similarity index 100% rename from portal/src/main/webapp/fonts/glyphicons-halflings-regular.ttf rename to src/main/resources/webapp/fonts/glyphicons-halflings-regular.ttf diff --git a/portal/src/main/webapp/fonts/glyphicons-halflings-regular.woff b/src/main/resources/webapp/fonts/glyphicons-halflings-regular.woff similarity index 100% rename from portal/src/main/webapp/fonts/glyphicons-halflings-regular.woff rename to src/main/resources/webapp/fonts/glyphicons-halflings-regular.woff diff --git a/portal/src/main/webapp/fonts/glyphicons-halflings-regular.woff2 b/src/main/resources/webapp/fonts/glyphicons-halflings-regular.woff2 similarity index 100% rename from portal/src/main/webapp/fonts/glyphicons-halflings-regular.woff2 rename to src/main/resources/webapp/fonts/glyphicons-halflings-regular.woff2 diff --git a/portal/src/main/webapp/gfx/popeye/bg1.png b/src/main/resources/webapp/gfx/popeye/bg1.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/bg1.png rename to src/main/resources/webapp/gfx/popeye/bg1.png diff --git a/portal/src/main/webapp/gfx/popeye/compact1.png b/src/main/resources/webapp/gfx/popeye/compact1.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/compact1.png rename to src/main/resources/webapp/gfx/popeye/compact1.png diff --git a/portal/src/main/webapp/gfx/popeye/compact2.png b/src/main/resources/webapp/gfx/popeye/compact2.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/compact2.png rename to src/main/resources/webapp/gfx/popeye/compact2.png diff --git a/portal/src/main/webapp/gfx/popeye/compact3.png b/src/main/resources/webapp/gfx/popeye/compact3.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/compact3.png rename to src/main/resources/webapp/gfx/popeye/compact3.png diff --git a/portal/src/main/webapp/gfx/popeye/compact4.png b/src/main/resources/webapp/gfx/popeye/compact4.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/compact4.png rename to src/main/resources/webapp/gfx/popeye/compact4.png diff --git a/portal/src/main/webapp/gfx/popeye/compact4_small.png b/src/main/resources/webapp/gfx/popeye/compact4_small.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/compact4_small.png rename to src/main/resources/webapp/gfx/popeye/compact4_small.png diff --git a/portal/src/main/webapp/gfx/popeye/enlarge1.png b/src/main/resources/webapp/gfx/popeye/enlarge1.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/enlarge1.png rename to src/main/resources/webapp/gfx/popeye/enlarge1.png diff --git a/portal/src/main/webapp/gfx/popeye/enlarge2.png b/src/main/resources/webapp/gfx/popeye/enlarge2.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/enlarge2.png rename to src/main/resources/webapp/gfx/popeye/enlarge2.png diff --git a/portal/src/main/webapp/gfx/popeye/enlarge3.png b/src/main/resources/webapp/gfx/popeye/enlarge3.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/enlarge3.png rename to src/main/resources/webapp/gfx/popeye/enlarge3.png diff --git a/portal/src/main/webapp/gfx/popeye/enlarge4.png b/src/main/resources/webapp/gfx/popeye/enlarge4.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/enlarge4.png rename to src/main/resources/webapp/gfx/popeye/enlarge4.png diff --git a/portal/src/main/webapp/gfx/popeye/enlarge4_small.png b/src/main/resources/webapp/gfx/popeye/enlarge4_small.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/enlarge4_small.png rename to src/main/resources/webapp/gfx/popeye/enlarge4_small.png diff --git a/portal/src/main/webapp/gfx/popeye/loading1.gif b/src/main/resources/webapp/gfx/popeye/loading1.gif similarity index 100% rename from portal/src/main/webapp/gfx/popeye/loading1.gif rename to src/main/resources/webapp/gfx/popeye/loading1.gif diff --git a/portal/src/main/webapp/gfx/popeye/loading2.gif b/src/main/resources/webapp/gfx/popeye/loading2.gif similarity index 100% rename from portal/src/main/webapp/gfx/popeye/loading2.gif rename to src/main/resources/webapp/gfx/popeye/loading2.gif diff --git a/portal/src/main/webapp/gfx/popeye/loading3.gif b/src/main/resources/webapp/gfx/popeye/loading3.gif similarity index 100% rename from portal/src/main/webapp/gfx/popeye/loading3.gif rename to src/main/resources/webapp/gfx/popeye/loading3.gif diff --git a/portal/src/main/webapp/gfx/popeye/next1.png b/src/main/resources/webapp/gfx/popeye/next1.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/next1.png rename to src/main/resources/webapp/gfx/popeye/next1.png diff --git a/portal/src/main/webapp/gfx/popeye/next3.png b/src/main/resources/webapp/gfx/popeye/next3.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/next3.png rename to src/main/resources/webapp/gfx/popeye/next3.png diff --git a/portal/src/main/webapp/gfx/popeye/next3_small.png b/src/main/resources/webapp/gfx/popeye/next3_small.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/next3_small.png rename to src/main/resources/webapp/gfx/popeye/next3_small.png diff --git a/portal/src/main/webapp/gfx/popeye/prev1.png b/src/main/resources/webapp/gfx/popeye/prev1.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/prev1.png rename to src/main/resources/webapp/gfx/popeye/prev1.png diff --git a/portal/src/main/webapp/gfx/popeye/prev3.png b/src/main/resources/webapp/gfx/popeye/prev3.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/prev3.png rename to src/main/resources/webapp/gfx/popeye/prev3.png diff --git a/portal/src/main/webapp/gfx/popeye/prev3_small.png b/src/main/resources/webapp/gfx/popeye/prev3_small.png similarity index 100% rename from portal/src/main/webapp/gfx/popeye/prev3_small.png rename to src/main/resources/webapp/gfx/popeye/prev3_small.png diff --git a/portal/src/main/webapp/gfx/site/bg.jpg b/src/main/resources/webapp/gfx/site/bg.jpg similarity index 100% rename from portal/src/main/webapp/gfx/site/bg.jpg rename to src/main/resources/webapp/gfx/site/bg.jpg diff --git a/portal/src/main/webapp/images/3d-hotspots.svg b/src/main/resources/webapp/images/3d-hotspots.svg similarity index 100% rename from portal/src/main/webapp/images/3d-hotspots.svg rename to src/main/resources/webapp/images/3d-hotspots.svg diff --git a/portal/src/main/webapp/images/IGVlogo.png b/src/main/resources/webapp/images/IGVlogo.png similarity index 100% rename from portal/src/main/webapp/images/IGVlogo.png rename to src/main/resources/webapp/images/IGVlogo.png diff --git a/portal/src/main/webapp/images/SU2C-PCF-logo.png b/src/main/resources/webapp/images/SU2C-PCF-logo.png similarity index 100% rename from portal/src/main/webapp/images/SU2C-PCF-logo.png rename to src/main/resources/webapp/images/SU2C-PCF-logo.png diff --git a/portal/src/main/webapp/images/Sorting icons.psd b/src/main/resources/webapp/images/Sorting icons.psd similarity index 100% rename from portal/src/main/webapp/images/Sorting icons.psd rename to src/main/resources/webapp/images/Sorting icons.psd diff --git a/portal/src/main/webapp/images/ajax-loader-no-text.gif b/src/main/resources/webapp/images/ajax-loader-no-text.gif similarity index 100% rename from portal/src/main/webapp/images/ajax-loader-no-text.gif rename to src/main/resources/webapp/images/ajax-loader-no-text.gif diff --git a/portal/src/main/webapp/images/ajax-loader.gif b/src/main/resources/webapp/images/ajax-loader.gif similarity index 100% rename from portal/src/main/webapp/images/ajax-loader.gif rename to src/main/resources/webapp/images/ajax-loader.gif diff --git a/portal/src/main/webapp/images/ajax-loader2.gif b/src/main/resources/webapp/images/ajax-loader2.gif similarity index 100% rename from portal/src/main/webapp/images/ajax-loader2.gif rename to src/main/resources/webapp/images/ajax-loader2.gif diff --git a/portal/src/main/webapp/images/allele-freq-thumbnail.jpg b/src/main/resources/webapp/images/allele-freq-thumbnail.jpg similarity index 100% rename from portal/src/main/webapp/images/allele-freq-thumbnail.jpg rename to src/main/resources/webapp/images/allele-freq-thumbnail.jpg diff --git a/portal/src/main/webapp/images/altered.gif b/src/main/resources/webapp/images/altered.gif similarity index 100% rename from portal/src/main/webapp/images/altered.gif rename to src/main/resources/webapp/images/altered.gif diff --git a/portal/src/main/webapp/images/arrow-down.svg b/src/main/resources/webapp/images/arrow-down.svg similarity index 100% rename from portal/src/main/webapp/images/arrow-down.svg rename to src/main/resources/webapp/images/arrow-down.svg diff --git a/portal/src/main/webapp/images/arrow-up.svg b/src/main/resources/webapp/images/arrow-up.svg similarity index 100% rename from portal/src/main/webapp/images/arrow-up.svg rename to src/main/resources/webapp/images/arrow-up.svg diff --git a/portal/src/main/webapp/images/arrow_bottom.png b/src/main/resources/webapp/images/arrow_bottom.png similarity index 100% rename from portal/src/main/webapp/images/arrow_bottom.png rename to src/main/resources/webapp/images/arrow_bottom.png diff --git a/portal/src/main/webapp/images/arrow_studyview.png b/src/main/resources/webapp/images/arrow_studyview.png similarity index 100% rename from portal/src/main/webapp/images/arrow_studyview.png rename to src/main/resources/webapp/images/arrow_studyview.png diff --git a/portal/src/main/webapp/images/arrow_top.png b/src/main/resources/webapp/images/arrow_top.png similarity index 100% rename from portal/src/main/webapp/images/arrow_top.png rename to src/main/resources/webapp/images/arrow_top.png diff --git a/portal/src/main/webapp/images/back_disabled.jpg b/src/main/resources/webapp/images/back_disabled.jpg similarity index 100% rename from portal/src/main/webapp/images/back_disabled.jpg rename to src/main/resources/webapp/images/back_disabled.jpg diff --git a/portal/src/main/webapp/images/back_enabled.jpg b/src/main/resources/webapp/images/back_enabled.jpg similarity index 100% rename from portal/src/main/webapp/images/back_enabled.jpg rename to src/main/resources/webapp/images/back_enabled.jpg diff --git a/portal/src/main/webapp/images/blank.svg b/src/main/resources/webapp/images/blank.svg similarity index 100% rename from portal/src/main/webapp/images/blank.svg rename to src/main/resources/webapp/images/blank.svg diff --git a/portal/src/main/webapp/images/bullseye.ai b/src/main/resources/webapp/images/bullseye.ai similarity index 100% rename from portal/src/main/webapp/images/bullseye.ai rename to src/main/resources/webapp/images/bullseye.ai diff --git a/portal/src/main/webapp/images/bullseye.gif b/src/main/resources/webapp/images/bullseye.gif similarity index 100% rename from portal/src/main/webapp/images/bullseye.gif rename to src/main/resources/webapp/images/bullseye.gif diff --git a/portal/src/main/webapp/images/bullseye.png b/src/main/resources/webapp/images/bullseye.png similarity index 100% rename from portal/src/main/webapp/images/bullseye.png rename to src/main/resources/webapp/images/bullseye.png diff --git a/portal/src/main/webapp/images/cancer-hotspots.svg b/src/main/resources/webapp/images/cancer-hotspots.svg similarity index 100% rename from portal/src/main/webapp/images/cancer-hotspots.svg rename to src/main/resources/webapp/images/cancer-hotspots.svg diff --git a/portal/src/main/webapp/images/cbioLogo.png b/src/main/resources/webapp/images/cbioLogo.png similarity index 100% rename from portal/src/main/webapp/images/cbioLogo.png rename to src/main/resources/webapp/images/cbioLogo.png diff --git a/portal/src/main/webapp/images/cbioportal_icon.png b/src/main/resources/webapp/images/cbioportal_icon.png similarity index 100% rename from portal/src/main/webapp/images/cbioportal_icon.png rename to src/main/resources/webapp/images/cbioportal_icon.png diff --git a/portal/src/main/webapp/images/cbioportal_logo.png b/src/main/resources/webapp/images/cbioportal_logo.png similarity index 100% rename from portal/src/main/webapp/images/cbioportal_logo.png rename to src/main/resources/webapp/images/cbioportal_logo.png diff --git a/portal/src/main/webapp/images/check.gif b/src/main/resources/webapp/images/check.gif similarity index 100% rename from portal/src/main/webapp/images/check.gif rename to src/main/resources/webapp/images/check.gif diff --git a/portal/src/main/webapp/images/chosen-sprite.png b/src/main/resources/webapp/images/chosen-sprite.png similarity index 100% rename from portal/src/main/webapp/images/chosen-sprite.png rename to src/main/resources/webapp/images/chosen-sprite.png diff --git a/portal/src/main/webapp/images/civic-logo-disabled.png b/src/main/resources/webapp/images/civic-logo-disabled.png similarity index 100% rename from portal/src/main/webapp/images/civic-logo-disabled.png rename to src/main/resources/webapp/images/civic-logo-disabled.png diff --git a/portal/src/main/webapp/images/civic-logo.png b/src/main/resources/webapp/images/civic-logo.png similarity index 100% rename from portal/src/main/webapp/images/civic-logo.png rename to src/main/resources/webapp/images/civic-logo.png diff --git a/portal/src/main/webapp/images/civic_text_logo.png b/src/main/resources/webapp/images/civic_text_logo.png similarity index 100% rename from portal/src/main/webapp/images/civic_text_logo.png rename to src/main/resources/webapp/images/civic_text_logo.png diff --git a/portal/src/main/webapp/images/close.svg b/src/main/resources/webapp/images/close.svg similarity index 100% rename from portal/src/main/webapp/images/close.svg rename to src/main/resources/webapp/images/close.svg diff --git a/portal/src/main/webapp/images/closequote.png b/src/main/resources/webapp/images/closequote.png similarity index 100% rename from portal/src/main/webapp/images/closequote.png rename to src/main/resources/webapp/images/closequote.png diff --git a/portal/src/main/webapp/images/cohort.png b/src/main/resources/webapp/images/cohort.png similarity index 100% rename from portal/src/main/webapp/images/cohort.png rename to src/main/resources/webapp/images/cohort.png diff --git a/portal/src/main/webapp/images/colormutations.svg b/src/main/resources/webapp/images/colormutations.svg similarity index 100% rename from portal/src/main/webapp/images/colormutations.svg rename to src/main/resources/webapp/images/colormutations.svg diff --git a/portal/src/main/webapp/images/contract.svg b/src/main/resources/webapp/images/contract.svg similarity index 100% rename from portal/src/main/webapp/images/contract.svg rename to src/main/resources/webapp/images/contract.svg diff --git a/portal/src/main/webapp/images/cool.svg b/src/main/resources/webapp/images/cool.svg similarity index 100% rename from portal/src/main/webapp/images/cool.svg rename to src/main/resources/webapp/images/cool.svg diff --git a/portal/src/main/webapp/images/cool2.svg b/src/main/resources/webapp/images/cool2.svg similarity index 100% rename from portal/src/main/webapp/images/cool2.svg rename to src/main/resources/webapp/images/cool2.svg diff --git a/portal/src/main/webapp/images/cosmic.gif b/src/main/resources/webapp/images/cosmic.gif similarity index 100% rename from portal/src/main/webapp/images/cosmic.gif rename to 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diff --git a/portal/src/main/webapp/images/uncolormutations.svg b/src/main/resources/webapp/images/uncolormutations.svg similarity index 100% rename from portal/src/main/webapp/images/uncolormutations.svg rename to src/main/resources/webapp/images/uncolormutations.svg diff --git a/portal/src/main/webapp/images/undo.svg b/src/main/resources/webapp/images/undo.svg similarity index 100% rename from portal/src/main/webapp/images/undo.svg rename to src/main/resources/webapp/images/undo.svg diff --git a/portal/src/main/webapp/images/unremoveUCases.svg b/src/main/resources/webapp/images/unremoveUCases.svg similarity index 100% rename from portal/src/main/webapp/images/unremoveUCases.svg rename to src/main/resources/webapp/images/unremoveUCases.svg diff --git a/portal/src/main/webapp/images/unremoveWhitespace.svg b/src/main/resources/webapp/images/unremoveWhitespace.svg similarity index 100% rename from portal/src/main/webapp/images/unremoveWhitespace.svg rename to 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a/portal/src/main/webapp/images/warning.gif b/src/main/resources/webapp/images/warning.gif similarity index 100% rename from portal/src/main/webapp/images/warning.gif rename to src/main/resources/webapp/images/warning.gif diff --git a/portal/src/main/webapp/images/webstart.jpg b/src/main/resources/webapp/images/webstart.jpg similarity index 100% rename from portal/src/main/webapp/images/webstart.jpg rename to src/main/resources/webapp/images/webstart.jpg diff --git a/portal/src/main/webapp/images/zoom-in.svg b/src/main/resources/webapp/images/zoom-in.svg similarity index 100% rename from portal/src/main/webapp/images/zoom-in.svg rename to src/main/resources/webapp/images/zoom-in.svg diff --git a/portal/src/main/webapp/images/zoom-out.svg b/src/main/resources/webapp/images/zoom-out.svg similarity index 98% rename from portal/src/main/webapp/images/zoom-out.svg rename to src/main/resources/webapp/images/zoom-out.svg index 5a3dd18b491..a8faf5e8ee6 100644 --- a/portal/src/main/webapp/images/zoom-out.svg +++ b/src/main/resources/webapp/images/zoom-out.svg @@ -1,14 +1,14 @@ - - - - - - - - + + + + + + + + diff --git a/portal/src/main/webapp/images/zoom-to-fit.svg b/src/main/resources/webapp/images/zoom-to-fit.svg similarity index 98% rename from portal/src/main/webapp/images/zoom-to-fit.svg rename to src/main/resources/webapp/images/zoom-to-fit.svg index 508320c431b..34c94879e77 100755 --- a/portal/src/main/webapp/images/zoom-to-fit.svg +++ b/src/main/resources/webapp/images/zoom-to-fit.svg @@ -1,12 +1,12 @@ - - - - - - - - + + + + + + + + diff --git a/portal/src/main/webapp/index.jsp b/src/main/resources/webapp/index.jsp similarity index 100% rename from portal/src/main/webapp/index.jsp rename to src/main/resources/webapp/index.jsp diff --git a/src/main/resources/webapp/js/src/load-frontend.js b/src/main/resources/webapp/js/src/load-frontend.js new file mode 100644 index 00000000000..27b3ca57435 --- /dev/null +++ b/src/main/resources/webapp/js/src/load-frontend.js @@ -0,0 +1,104 @@ + +function clearDevState(e){ + localStorage.removeItem('localdev'); + localStorage.removeItem('localdist'); + localStorage.removeItem('netlify'); + window.location.reload(); +} + +function showFrontendPopup(url) { + document.addEventListener("DOMContentLoaded", function(event) { + var newDiv = document.createElement("div"); + newDiv.setAttribute('class', 'local-dev-banner') + newDiv.setAttribute('style', 'position: fixed; z-index:100; top: 0; left: 0; width: 100%'); + document.body.appendChild(newDiv); + newDiv.innerHTML = '
    ' + + '
    ' + + '' + + 'cbioportal-frontend dev mode, using ' + url + ' clear' + + '
    ' + + '
    '; + newDiv.onclick=function(){ + document.body.removeChild(this); + } + }); +} + +function GetIEVersion() { + var sAgent = window.navigator.userAgent; + var Idx = sAgent.indexOf("MSIE"); + + // If IE, return version number. + if (Idx > 0) + return parseInt(sAgent.substring(Idx+ 5, sAgent.indexOf(".", Idx))); + + // If IE 11 then look for Updated user agent string. + else if (!!navigator.userAgent.match(/Trident\/7\./)) + return 11; + + else + return 0; //It is not IE +} + +const unsupportedBrowser = + '
    ' + + '

    Apologies, we no longer support your browser

    ' + + '

    Visit list of supported browsers

    ' + + '
    '; + +window.loadReactApp = function(config) { + // Set frontend route to /patient + window.defaultRoute = '/' + config.defaultRoute; + + // if any version of Internet Explorer, show unsupported browser message + if (GetIEVersion() > 0) { + var div = document.createElement("div"); + div.innerHTML = unsupportedBrowser; + document.body.appendChild(div); + return; + } + + if (window.frontendConfig.frontendUrl === undefined) { + // this should never happen + if (console.error) { + console.error('ERROR: No frontend URL defined, should at least be empty string'); + } else { + console.log('ERROR: No frontend URL defined, should at least be empty string'); + } + } + if (window.localdev || window.localdist || localStorage.netlify) { + showFrontendPopup(window.frontendConfig.frontendUrl); + } + document.write(' diff --git a/portal/src/main/webapp/WEB-INF/jsp/mutation_details.jsp b/src/main/resources/webapp/jsp/mutation_details.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/mutation_details.jsp rename to src/main/resources/webapp/jsp/mutation_details.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/mutation_views.jsp b/src/main/resources/webapp/jsp/mutation_views.jsp similarity index 94% rename from portal/src/main/webapp/WEB-INF/jsp/mutation_views.jsp rename to src/main/resources/webapp/jsp/mutation_views.jsp index 2cbca18573b..4c40c313c7b 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/mutation_views.jsp +++ b/src/main/resources/webapp/jsp/mutation_views.jsp @@ -30,4 +30,4 @@ - along with this program. If not, see . --%> -<%@ include file="mutation/mutationMapperTemplates.html" %> +<%@ include file="src/main/webapp/jsp/mutation/mutationMapperTemplates.html" %> diff --git a/portal/src/main/webapp/WEB-INF/jsp/mutex_tab.jsp b/src/main/resources/webapp/jsp/mutex_tab.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/mutex_tab.jsp rename to src/main/resources/webapp/jsp/mutex_tab.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/network_div.jsp b/src/main/resources/webapp/jsp/network_div.jsp similarity index 93% rename from portal/src/main/webapp/WEB-INF/jsp/network_div.jsp rename to src/main/resources/webapp/jsp/network_div.jsp index 28eba01a027..5f6f28abe42 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/network_div.jsp +++ b/src/main/resources/webapp/jsp/network_div.jsp @@ -35,7 +35,7 @@ @@ -46,7 +46,7 @@ diff --git a/portal/src/main/webapp/WEB-INF/jsp/network_help.jsp b/src/main/resources/webapp/jsp/network_help.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/network_help.jsp rename to src/main/resources/webapp/jsp/network_help.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/network_menu.jsp b/src/main/resources/webapp/jsp/network_menu.jsp similarity index 97% rename from portal/src/main/webapp/WEB-INF/jsp/network_menu.jsp rename to src/main/resources/webapp/jsp/network_menu.jsp index 8fd595ffbf7..b4b48850d16 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/network_menu.jsp +++ b/src/main/resources/webapp/jsp/network_menu.jsp @@ -30,129 +30,129 @@ - along with this program. If not, see . --%> -<% -Boolean includeNetLegend = (Boolean)request.getAttribute("include_network_legend"); -if (includeNetLegend==null) { - includeNetLegend = Boolean.TRUE; -} -%> - - -
    - -
    +<% +Boolean includeNetLegend = (Boolean)request.getAttribute("include_network_legend"); +if (includeNetLegend==null) { + includeNetLegend = Boolean.TRUE; +} +%> + + +
    + +
    diff --git a/portal/src/main/webapp/WEB-INF/jsp/network_tabs.jsp b/src/main/resources/webapp/jsp/network_tabs.jsp old mode 100755 new mode 100644 similarity index 98% rename from portal/src/main/webapp/WEB-INF/jsp/network_tabs.jsp rename to src/main/resources/webapp/jsp/network_tabs.jsp index fcc0ac36764..38af7adf8d2 --- a/portal/src/main/webapp/WEB-INF/jsp/network_tabs.jsp +++ b/src/main/resources/webapp/jsp/network_tabs.jsp @@ -157,7 +157,7 @@ if (includeHelpTab==null) { <%if(includeHelpTab){%>
    - +
    <%}%> diff --git a/portal/src/main/webapp/WEB-INF/jsp/network_views.jsp b/src/main/resources/webapp/jsp/network_views.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/network_views.jsp rename to src/main/resources/webapp/jsp/network_views.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/networks.jsp b/src/main/resources/webapp/jsp/networks.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/networks.jsp rename to src/main/resources/webapp/jsp/networks.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncokb/oncokb-card-template.html b/src/main/resources/webapp/jsp/oncokb/oncokb-card-template.html similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncokb/oncokb-card-template.html rename to src/main/resources/webapp/jsp/oncokb/oncokb-card-template.html diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncoprint/cna-file-example.txt b/src/main/resources/webapp/jsp/oncoprint/cna-file-example.txt similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncoprint/cna-file-example.txt rename to src/main/resources/webapp/jsp/oncoprint/cna-file-example.txt diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncoprint/controls-templates.jsp b/src/main/resources/webapp/jsp/oncoprint/controls-templates.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncoprint/controls-templates.jsp rename to src/main/resources/webapp/jsp/oncoprint/controls-templates.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncoprint/example-clinic-events.txt b/src/main/resources/webapp/jsp/oncoprint/example-clinic-events.txt similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncoprint/example-clinic-events.txt rename to src/main/resources/webapp/jsp/oncoprint/example-clinic-events.txt diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncoprint/example-genomic-events.txt b/src/main/resources/webapp/jsp/oncoprint/example-genomic-events.txt similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncoprint/example-genomic-events.txt rename to src/main/resources/webapp/jsp/oncoprint/example-genomic-events.txt diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncoprint/legend-template.jsp b/src/main/resources/webapp/jsp/oncoprint/legend-template.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncoprint/legend-template.jsp rename to src/main/resources/webapp/jsp/oncoprint/legend-template.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncoprint/main.jsp b/src/main/resources/webapp/jsp/oncoprint/main.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncoprint/main.jsp rename to src/main/resources/webapp/jsp/oncoprint/main.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/oncoprint/mutation-file-example.txt b/src/main/resources/webapp/jsp/oncoprint/mutation-file-example.txt similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/oncoprint/mutation-file-example.txt rename to src/main/resources/webapp/jsp/oncoprint/mutation-file-example.txt diff --git a/portal/src/main/webapp/WEB-INF/jsp/pancancer_study_summary.jsp b/src/main/resources/webapp/jsp/pancancer_study_summary.jsp old mode 100755 new mode 100644 similarity index 97% rename from portal/src/main/webapp/WEB-INF/jsp/pancancer_study_summary.jsp rename to src/main/resources/webapp/jsp/pancancer_study_summary.jsp index d225e3241cb..e291b791f14 --- a/portal/src/main/webapp/WEB-INF/jsp/pancancer_study_summary.jsp +++ b/src/main/resources/webapp/jsp/pancancer_study_summary.jsp @@ -40,7 +40,7 @@ -<%@ include file="pancancer_study_summary/pancancer_study_summary_templates.html" %> +<%@ include file="src/main/webapp/jsp/pancancer_study_summary/pancancer_study_summary_templates.html" %> diff --git a/portal/src/main/webapp/WEB-INF/jsp/pancancer_study_summary/pancancer_study_summary_templates.html b/src/main/resources/webapp/jsp/pancancer_study_summary/pancancer_study_summary_templates.html old mode 100755 new mode 100644 similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/pancancer_study_summary/pancancer_study_summary_templates.html rename to src/main/resources/webapp/jsp/pancancer_study_summary/pancancer_study_summary_templates.html diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/clinical_timeline.jsp b/src/main/resources/webapp/jsp/patient_view/clinical_timeline.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/clinical_timeline.jsp rename to src/main/resources/webapp/jsp/patient_view/clinical_timeline.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/cna.jsp b/src/main/resources/webapp/jsp/patient_view/cna.jsp similarity index 99% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/cna.jsp rename to src/main/resources/webapp/jsp/patient_view/cna.jsp index b3fa9161395..9e30f255ed4 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/patient_view/cna.jsp +++ b/src/main/resources/webapp/jsp/patient_view/cna.jsp @@ -589,7 +589,7 @@     diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/cna_table_template.jsp b/src/main/resources/webapp/jsp/patient_view/cna_table_template.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/cna_table_template.jsp rename to src/main/resources/webapp/jsp/patient_view/cna_table_template.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/drugs.jsp b/src/main/resources/webapp/jsp/patient_view/drugs.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/drugs.jsp rename to src/main/resources/webapp/jsp/patient_view/drugs.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/mdacc_patient_heatmap_viewer.jsp b/src/main/resources/webapp/jsp/patient_view/mdacc_patient_heatmap_viewer.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/mdacc_patient_heatmap_viewer.jsp rename to src/main/resources/webapp/jsp/patient_view/mdacc_patient_heatmap_viewer.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/mutations.jsp b/src/main/resources/webapp/jsp/patient_view/mutations.jsp similarity index 99% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/mutations.jsp rename to src/main/resources/webapp/jsp/patient_view/mutations.jsp index 5f29f98210b..4b25b3421f6 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/patient_view/mutations.jsp +++ b/src/main/resources/webapp/jsp/patient_view/mutations.jsp @@ -1314,7 +1314,7 @@ diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/mutations_table_template.jsp b/src/main/resources/webapp/jsp/patient_view/mutations_table_template.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/mutations_table_template.jsp rename to src/main/resources/webapp/jsp/patient_view/mutations_table_template.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/path_report.jsp b/src/main/resources/webapp/jsp/patient_view/path_report.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/path_report.jsp rename to src/main/resources/webapp/jsp/patient_view/path_report.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/pathways.jsp b/src/main/resources/webapp/jsp/patient_view/pathways.jsp similarity index 98% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/pathways.jsp rename to src/main/resources/webapp/jsp/patient_view/pathways.jsp index 89d3790bce8..1bd3c6c58a6 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/patient_view/pathways.jsp +++ b/src/main/resources/webapp/jsp/patient_view/pathways.jsp @@ -73,4 +73,4 @@ request.setAttribute("include_network_legend", Boolean.FALSE); ); - + diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/patient_view.jsp b/src/main/resources/webapp/jsp/patient_view/patient_view.jsp similarity index 97% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/patient_view.jsp rename to src/main/resources/webapp/jsp/patient_view/patient_view.jsp index 70e038e4846..3e3dcbdb99c 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/patient_view/patient_view.jsp +++ b/src/main/resources/webapp/jsp/patient_view/patient_view.jsp @@ -49,7 +49,7 @@ <%@ taglib prefix="c" uri="http://java.sun.com/jsp/jstl/core"%> <%@ taglib prefix="sec" uri="http://www.springframework.org/security/tags" %> - + <%@taglib prefix="t" tagdir="/WEB-INF/tags" %> diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/samples_table.jsp b/src/main/resources/webapp/jsp/patient_view/samples_table.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/samples_table.jsp rename to src/main/resources/webapp/jsp/patient_view/samples_table.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/similar_patients.jsp b/src/main/resources/webapp/jsp/patient_view/similar_patients.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/similar_patients.jsp rename to src/main/resources/webapp/jsp/patient_view/similar_patients.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/summary.jsp b/src/main/resources/webapp/jsp/patient_view/summary.jsp similarity index 97% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/summary.jsp rename to src/main/resources/webapp/jsp/patient_view/summary.jsp index 59e67d2379e..d1dc8ff3905 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/patient_view/summary.jsp +++ b/src/main/resources/webapp/jsp/patient_view/summary.jsp @@ -125,7 +125,7 @@ <%if(showTimeline){%> - +
    <%}%> @@ -268,7 +268,7 @@     @@ -284,7 +284,7 @@ diff --git a/portal/src/main/webapp/WEB-INF/jsp/patient_view/tissue_images.jsp b/src/main/resources/webapp/jsp/patient_view/tissue_images.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/patient_view/tissue_images.jsp rename to src/main/resources/webapp/jsp/patient_view/tissue_images.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/plots_tab.jsp b/src/main/resources/webapp/jsp/plots_tab.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/plots_tab.jsp rename to src/main/resources/webapp/jsp/plots_tab.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/preview.jsp b/src/main/resources/webapp/jsp/preview.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/preview.jsp rename to src/main/resources/webapp/jsp/preview.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/preview_su2c.jsp b/src/main/resources/webapp/jsp/preview_su2c.jsp similarity index 100% rename from portal/src/main/webapp/WEB-INF/jsp/preview_su2c.jsp rename to src/main/resources/webapp/jsp/preview_su2c.jsp diff --git a/portal/src/main/webapp/WEB-INF/jsp/query_form.jsp b/src/main/resources/webapp/jsp/query_form.jsp similarity index 96% rename from portal/src/main/webapp/WEB-INF/jsp/query_form.jsp rename to src/main/resources/webapp/jsp/query_form.jsp index 218b7e7fcf1..de1a36df7fc 100644 --- a/portal/src/main/webapp/WEB-INF/jsp/query_form.jsp +++ b/src/main/resources/webapp/jsp/query_form.jsp @@ -163,11 +163,11 @@
    - <%@ include file="step1_json.jsp" %> - <%@ include file="step2_json.jsp" %> - <%@ include file="step3_json.jsp" %> - <%@ include file="step4_json.jsp" %> - <%@ include file="step5_json.jsp" %> + <%@ include file="src/main/webapp/jsp/step1_json.jsp" %> + <%@ include file="src/main/webapp/jsp/step2_json.jsp" %> + <%@ include file="src/main/webapp/jsp/step3_json.jsp" %> + <%@ include file="src/main/webapp/jsp/step4_json.jsp" %> + <%@ include file="src/main/webapp/jsp/step5_json.jsp" %> - + -<%@ include file="global/global_variables.jsp" %> - +<%@ include file="src/main/webapp/jsp/global/global_variables.jsp" %> + - +
    - +
    - +
    - <%@ include file="cna_table_template.jsp"%> + <%@ include file="src/main/webapp/jsp/patient_view/cna_table_template.jsp"%>
    - <%@ include file="mutations_table_template.jsp"%> + <%@ include file="src/main/webapp/jsp/patient_view/mutations_table_template.jsp"%>
    - <%@ include file="mutations_table_template.jsp"%> + <%@ include file="src/main/webapp/jsp/patient_view/mutations_table_template.jsp"%>
    - <%@ include file="cna_table_template.jsp"%> + <%@ include file="src/main/webapp/jsp/patient_view/cna_table_template.jsp"%>
    @@ -203,7 +203,7 @@ if (graphml!=null&&!graphml.isEmpty()) { }); - + <% } else { %> diff --git a/portal/src/main/webapp/networks.jsp b/src/main/resources/webapp/networks.jsp similarity index 88% rename from portal/src/main/webapp/networks.jsp rename to src/main/resources/webapp/networks.jsp index 9c89eb1ab5c..0222f6f004d 100644 --- a/portal/src/main/webapp/networks.jsp +++ b/src/main/resources/webapp/networks.jsp @@ -39,7 +39,7 @@ <% request.setAttribute(QueryBuilder.HTML_TITLE, siteTitle+"::What's New"); %> - +
    @@ -57,18 +57,18 @@
    - +
    - +
    - + diff --git a/portal/src/main/webapp/release_notes_mutation_mapper.jsp b/src/main/resources/webapp/release_notes_mutation_mapper.jsp similarity index 96% rename from portal/src/main/webapp/release_notes_mutation_mapper.jsp rename to src/main/resources/webapp/release_notes_mutation_mapper.jsp index 1e4f4125b9c..361992b76a6 100644 --- a/portal/src/main/webapp/release_notes_mutation_mapper.jsp +++ b/src/main/resources/webapp/release_notes_mutation_mapper.jsp @@ -49,7 +49,7 @@

    <%@ include file="content/release_notes_mutation_mapper.html" %>

    - + diff --git a/portal/src/main/webapp/release_notes_oncoprinter.jsp b/src/main/resources/webapp/release_notes_oncoprinter.jsp similarity index 96% rename from portal/src/main/webapp/release_notes_oncoprinter.jsp rename to src/main/resources/webapp/release_notes_oncoprinter.jsp index 37c06cdda4e..39a2756d9d1 100644 --- a/portal/src/main/webapp/release_notes_oncoprinter.jsp +++ b/src/main/resources/webapp/release_notes_oncoprinter.jsp @@ -49,7 +49,7 @@

    <%@ include file="content/release_notes_oncoprinter.html" %>

    - + diff --git a/portal/src/main/webapp/restful_login.jsp b/src/main/resources/webapp/restful_login.jsp similarity index 91% rename from portal/src/main/webapp/restful_login.jsp rename to src/main/resources/webapp/restful_login.jsp index fbf85d5195f..3a8ee434293 100644 --- a/portal/src/main/webapp/restful_login.jsp +++ b/src/main/resources/webapp/restful_login.jsp @@ -45,7 +45,7 @@ } %> - +

    Connecting to the MSK cBioPortal...

    @@ -54,13 +54,13 @@ - + - + diff --git a/portal/src/main/webapp/robots.jsp b/src/main/resources/webapp/robots.jsp similarity index 100% rename from portal/src/main/webapp/robots.jsp rename to src/main/resources/webapp/robots.jsp diff --git a/portal/src/main/webapp/sbgn-view.html b/src/main/resources/webapp/sbgn-view.html similarity index 100% rename from portal/src/main/webapp/sbgn-view.html rename to src/main/resources/webapp/sbgn-view.html diff --git a/portal/src/main/webapp/sci_signal_reprint.jsp b/src/main/resources/webapp/sci_signal_reprint.jsp similarity index 100% rename from portal/src/main/webapp/sci_signal_reprint.jsp rename to src/main/resources/webapp/sci_signal_reprint.jsp diff --git a/portal/src/main/webapp/sitemap_index.jsp b/src/main/resources/webapp/sitemap_index.jsp similarity index 97% rename from portal/src/main/webapp/sitemap_index.jsp rename to src/main/resources/webapp/sitemap_index.jsp index f2f616fb636..5ef33976207 100644 --- a/portal/src/main/webapp/sitemap_index.jsp +++ b/src/main/resources/webapp/sitemap_index.jsp @@ -5,7 +5,6 @@ <%@ page import="org.json.simple.JSONObject" %> <%@ page import="org.json.simple.parser.*" %> <%@ page import="java.util.*" %> -<%@ page import="javax.servlet.http.*" %> <%@ page import="org.mskcc.cbio.portal.util.GlobalProperties" %> <% diff --git a/portal/src/main/webapp/sitemap_study.jsp b/src/main/resources/webapp/sitemap_study.jsp similarity index 100% rename from portal/src/main/webapp/sitemap_study.jsp rename to src/main/resources/webapp/sitemap_study.jsp diff --git a/portal/src/main/webapp/swf/CytoscapeWeb.swf b/src/main/resources/webapp/swf/CytoscapeWeb.swf similarity index 100% rename from portal/src/main/webapp/swf/CytoscapeWeb.swf rename to src/main/resources/webapp/swf/CytoscapeWeb.swf diff --git a/portal/src/main/webapp/swf/copy_csv_xls_pdf.swf b/src/main/resources/webapp/swf/copy_csv_xls_pdf.swf similarity index 100% rename from portal/src/main/webapp/swf/copy_csv_xls_pdf.swf rename to src/main/resources/webapp/swf/copy_csv_xls_pdf.swf diff --git a/portal/src/main/webapp/swf/playerProductInstall.swf b/src/main/resources/webapp/swf/playerProductInstall.swf similarity index 100% rename from portal/src/main/webapp/swf/playerProductInstall.swf rename to src/main/resources/webapp/swf/playerProductInstall.swf diff --git a/portal/src/main/webapp/swf/src/ApplicationFacade.as b/src/main/resources/webapp/swf/src/ApplicationFacade.as similarity index 100% rename from portal/src/main/webapp/swf/src/ApplicationFacade.as rename to src/main/resources/webapp/swf/src/ApplicationFacade.as diff --git a/portal/src/main/webapp/swf/src/CBioEdgeRenderer.as b/src/main/resources/webapp/swf/src/CBioEdgeRenderer.as similarity index 100% rename from portal/src/main/webapp/swf/src/CBioEdgeRenderer.as rename to src/main/resources/webapp/swf/src/CBioEdgeRenderer.as diff --git a/portal/src/main/webapp/swf/src/CBioHandleHoverCommand.as b/src/main/resources/webapp/swf/src/CBioHandleHoverCommand.as similarity index 96% rename from portal/src/main/webapp/swf/src/CBioHandleHoverCommand.as rename to src/main/resources/webapp/swf/src/CBioHandleHoverCommand.as index dc3dbc00bd6..92577005f8d 100644 --- a/portal/src/main/webapp/swf/src/CBioHandleHoverCommand.as +++ b/src/main/resources/webapp/swf/src/CBioHandleHoverCommand.as @@ -1,66 +1,66 @@ -package org.cytoscapeweb.controller -{ - import flare.vis.data.DataSprite; - import flare.vis.data.EdgeSprite; - import flare.vis.data.NodeSprite; - - import org.cytoscapeweb.ApplicationFacade; - import org.cytoscapeweb.model.converters.ExternalObjectConverter; - import org.cytoscapeweb.util.Edges; - import org.cytoscapeweb.util.ExternalFunctions; - import org.cytoscapeweb.util.Groups; - import org.cytoscapeweb.view.render.CBioNodeRenderer; - import org.puremvc.as3.interfaces.INotification; - - public class CBioHandleHoverCommand extends HandleHoverCommand - { - public function CBioHandleHoverCommand() - { - super(); - } - - override public function execute(notification:INotification):void { - super.execute(notification); - - var ds:DataSprite = notification.getBody() as DataSprite; - var action:String = notification.getName(); - var group:String = Groups.groupOf(ds); - - var type:String = action === ApplicationFacade.ROLLOVER_EVENT ? "mouseover" : "mouseout"; - var previousDs:DataSprite; - - switch (action) { - case ApplicationFacade.ROLLOVER_EVENT: - // For the hovered node added prop.detailFlag true to show the details. - if (ds is NodeSprite) { - ds.props.detailFlag = true; - NodeSprite(ds).visitEdges(function(e:EdgeSprite):Boolean { - graphMediator.resetDataSprite(e); - return false; - }); - - graphMediator.updateLabels(); - } else if (ds is EdgeSprite) { - - } - break; - case ApplicationFacade.ROLLOUT_EVENT: - if (ds is NodeSprite) { - // If the node is selected rollout do not cause details go off - if(ds.props.$selected) - ds.props.detailFlag = true; - else - ds.props.detailFlag = false; - NodeSprite(ds).visitEdges(function(e:EdgeSprite):Boolean { - graphMediator.resetDataSprite(e); - return false; - }); - - graphMediator.updateLabels(); - } else if (ds is EdgeSprite) { - - } - } - } - } +package org.cytoscapeweb.controller +{ + import flare.vis.data.DataSprite; + import flare.vis.data.EdgeSprite; + import flare.vis.data.NodeSprite; + + import org.cytoscapeweb.ApplicationFacade; + import org.cytoscapeweb.model.converters.ExternalObjectConverter; + import org.cytoscapeweb.util.Edges; + import org.cytoscapeweb.util.ExternalFunctions; + import org.cytoscapeweb.util.Groups; + import org.cytoscapeweb.view.render.CBioNodeRenderer; + import org.puremvc.as3.interfaces.INotification; + + public class CBioHandleHoverCommand extends HandleHoverCommand + { + public function CBioHandleHoverCommand() + { + super(); + } + + override public function execute(notification:INotification):void { + super.execute(notification); + + var ds:DataSprite = notification.getBody() as DataSprite; + var action:String = notification.getName(); + var group:String = Groups.groupOf(ds); + + var type:String = action === ApplicationFacade.ROLLOVER_EVENT ? "mouseover" : "mouseout"; + var previousDs:DataSprite; + + switch (action) { + case ApplicationFacade.ROLLOVER_EVENT: + // For the hovered node added prop.detailFlag true to show the details. + if (ds is NodeSprite) { + ds.props.detailFlag = true; + NodeSprite(ds).visitEdges(function(e:EdgeSprite):Boolean { + graphMediator.resetDataSprite(e); + return false; + }); + + graphMediator.updateLabels(); + } else if (ds is EdgeSprite) { + + } + break; + case ApplicationFacade.ROLLOUT_EVENT: + if (ds is NodeSprite) { + // If the node is selected rollout do not cause details go off + if(ds.props.$selected) + ds.props.detailFlag = true; + else + ds.props.detailFlag = false; + NodeSprite(ds).visitEdges(function(e:EdgeSprite):Boolean { + graphMediator.resetDataSprite(e); + return false; + }); + + graphMediator.updateLabels(); + } else if (ds is EdgeSprite) { + + } + } + } + } } \ No newline at end of file diff --git a/portal/src/main/webapp/swf/src/CBioNodeRenderer.as b/src/main/resources/webapp/swf/src/CBioNodeRenderer.as similarity index 100% rename from portal/src/main/webapp/swf/src/CBioNodeRenderer.as rename to src/main/resources/webapp/swf/src/CBioNodeRenderer.as diff --git a/portal/src/main/webapp/swf/src/DeselectCommand.as b/src/main/resources/webapp/swf/src/DeselectCommand.as similarity index 100% rename from portal/src/main/webapp/swf/src/DeselectCommand.as rename to src/main/resources/webapp/swf/src/DeselectCommand.as diff --git a/portal/src/main/webapp/swf/src/Edges.as b/src/main/resources/webapp/swf/src/Edges.as similarity index 99% rename from portal/src/main/webapp/swf/src/Edges.as rename to src/main/resources/webapp/swf/src/Edges.as index 067eae8d909..b6119c11b4f 100644 --- a/portal/src/main/webapp/swf/src/Edges.as +++ b/src/main/resources/webapp/swf/src/Edges.as @@ -39,7 +39,7 @@ package org.cytoscapeweb.util { import org.cytoscapeweb.model.ConfigProxy; import org.cytoscapeweb.model.data.VisualStyleVO; import org.cytoscapeweb.view.render.CBioEdgeRenderer; - import org.cytoscapeweb.view.render.EdgeRenderer; + import org.cytoscapeweb.view.render.EdgeRenderer; public class Edges { diff --git a/portal/src/main/webapp/swf/src/ExternalMediator.as b/src/main/resources/webapp/swf/src/ExternalMediator.as similarity index 100% rename from portal/src/main/webapp/swf/src/ExternalMediator.as rename to src/main/resources/webapp/swf/src/ExternalMediator.as diff --git a/portal/src/main/webapp/swf/src/Nodes.as b/src/main/resources/webapp/swf/src/Nodes.as similarity index 100% rename from portal/src/main/webapp/swf/src/Nodes.as rename to src/main/resources/webapp/swf/src/Nodes.as diff --git a/portal/src/main/webapp/swf/src/README.txt b/src/main/resources/webapp/swf/src/README.txt similarity index 100% rename from portal/src/main/webapp/swf/src/README.txt rename to src/main/resources/webapp/swf/src/README.txt diff --git a/portal/src/main/webapp/swf/src/SelectCommand.as b/src/main/resources/webapp/swf/src/SelectCommand.as similarity index 100% rename from portal/src/main/webapp/swf/src/SelectCommand.as rename to src/main/resources/webapp/swf/src/SelectCommand.as diff --git a/portal/src/main/webapp/swf/src/ShowProfileDataCommand.as b/src/main/resources/webapp/swf/src/ShowProfileDataCommand.as similarity index 97% rename from portal/src/main/webapp/swf/src/ShowProfileDataCommand.as rename to src/main/resources/webapp/swf/src/ShowProfileDataCommand.as index 4b02739d518..6bbf8bc992a 100644 --- a/portal/src/main/webapp/swf/src/ShowProfileDataCommand.as +++ b/src/main/resources/webapp/swf/src/ShowProfileDataCommand.as @@ -1,19 +1,19 @@ -package org.cytoscapeweb.controller { - import org.puremvc.as3.interfaces.INotification; - import org.cytoscapeweb.view.render.CBioNodeRenderer; - - /** - * Handle enable and disable of whether profile data should always be shown. - */ - public class ShowProfileDataCommand extends BaseSimpleCommand { - - override public function execute(notification:INotification):void { - var show:Boolean = notification.getBody() as Boolean; - - if (show != CBioNodeRenderer.instance.detailFlag) { - CBioNodeRenderer.instance.detailFlag = show; - graphMediator.updateView(); - } - } - } +package org.cytoscapeweb.controller { + import org.puremvc.as3.interfaces.INotification; + import org.cytoscapeweb.view.render.CBioNodeRenderer; + + /** + * Handle enable and disable of whether profile data should always be shown. + */ + public class ShowProfileDataCommand extends BaseSimpleCommand { + + override public function execute(notification:INotification):void { + var show:Boolean = notification.getBody() as Boolean; + + if (show != CBioNodeRenderer.instance.detailFlag) { + CBioNodeRenderer.instance.detailFlag = show; + graphMediator.updateView(); + } + } + } } \ No newline at end of file diff --git a/portal/src/main/webapp/swf/src/cytoscapeweb.js b/src/main/resources/webapp/swf/src/cytoscapeweb.js similarity index 100% rename from portal/src/main/webapp/swf/src/cytoscapeweb.js rename to src/main/resources/webapp/swf/src/cytoscapeweb.js diff --git a/portal/src/main/webapp/WEB-INF/tags/template.tag b/src/main/resources/webapp/tags/template.tag similarity index 100% rename from portal/src/main/webapp/WEB-INF/tags/template.tag rename to src/main/resources/webapp/tags/template.tag diff --git a/portal/src/main/webapp/tracking_include.jsp b/src/main/resources/webapp/tracking_include.jsp similarity index 100% rename from portal/src/main/webapp/tracking_include.jsp rename to src/main/resources/webapp/tracking_include.jsp diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepositoryTest.java similarity index 89% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepositoryTest.java index cb880fe0190..242103d2f1d 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/AlterationDriverAnnotationMyBatisRepositoryTest.java @@ -1,22 +1,18 @@ package org.cbioportal.persistence.mybatis; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.AlterationDriverAnnotation; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.Arrays; -import java.util.List; - -import static org.junit.Assert.*; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {AlterationDriverAnnotationMyBatisRepository.class, TestConfig.class}) public class AlterationDriverAnnotationMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepositoryTest.java similarity index 98% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepositoryTest.java index 3ea53acf77e..440624b753b 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/AlterationMyBatisRepositoryTest.java @@ -1,21 +1,33 @@ package org.cbioportal.persistence.mybatis; -import org.cbioportal.model.*; +import java.sql.SQLException; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.HashSet; +import java.util.List; +import java.util.Set; +import java.util.TreeSet; +import org.cbioportal.model.AlterationCountByGene; +import org.cbioportal.model.AlterationCountByStructuralVariant; +import org.cbioportal.model.AlterationFilter; +import org.cbioportal.model.CNA; +import org.cbioportal.model.CopyNumberCountByGene; +import org.cbioportal.model.MolecularProfileCaseIdentifier; +import org.cbioportal.model.MutationEventType; +import org.cbioportal.model.QueryElement; import org.cbioportal.model.util.Select; +import org.cbioportal.persistence.mybatis.config.TestConfig; +import org.h2.tools.Server; import org.junit.Assert; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.*; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {AlterationMyBatisRepository.class, MolecularProfileMyBatisRepository.class, TestConfig.class}) public class AlterationMyBatisRepositoryTest { // mutation and cna events in testSql.sql diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepositoryTest.java similarity index 94% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepositoryTest.java index 8ab1a4b6040..bb071cb76bb 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/CancerTypeMyBatisRepositoryTest.java @@ -1,20 +1,18 @@ package org.cbioportal.persistence.mybatis; +import java.util.List; import org.cbioportal.model.TypeOfCancer; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {CancerTypeMyBatisRepository.class, TestConfig.class}) public class CancerTypeMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepositoryTest.java similarity index 86% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepositoryTest.java index a69bffcfee9..2166b2d0ab1 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/ClinicalAttributeMyBatisRepositoryTest.java @@ -1,22 +1,22 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.Optional; import org.cbioportal.model.ClinicalAttribute; import org.cbioportal.model.ClinicalAttributeCount; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {ClinicalAttributeMyBatisRepository.class, TestConfig.class}) public class ClinicalAttributeMyBatisRepositoryTest { @Autowired @@ -60,8 +60,10 @@ public void getAllClinicalAttributesDetailedProjection() throws Exception { null, null, null); Assert.assertEquals(28, result.size()); - ClinicalAttribute clinicalAttribute = result.get(0); - Assert.assertEquals("RETROSPECTIVE_COLLECTION", clinicalAttribute.getAttrId()); + Optional clinicalAttributeOptional = + result.stream().filter(r -> r.getAttrId().equals("RETROSPECTIVE_COLLECTION")).findAny(); + Assert.assertTrue(clinicalAttributeOptional.isPresent()); + ClinicalAttribute clinicalAttribute = clinicalAttributeOptional.get(); Assert.assertEquals("study_tcga_pub", clinicalAttribute.getCancerStudyIdentifier()); Assert.assertEquals((Integer) 1, clinicalAttribute.getCancerStudyId()); Assert.assertEquals("STRING", clinicalAttribute.getDatatype()); @@ -137,8 +139,10 @@ public void getAllClinicalAttributesInStudySummaryProjection() throws Exception "study_tcga_pub", "SUMMARY", null, null, null, null); Assert.assertEquals(14, result.size()); - ClinicalAttribute clinicalAttribute = result.get(0); - Assert.assertEquals("RETROSPECTIVE_COLLECTION", clinicalAttribute.getAttrId()); + Optional clinicalAttributeOptional = + result.stream().filter(r -> r.getAttrId().equals("RETROSPECTIVE_COLLECTION")).findAny(); + Assert.assertTrue(clinicalAttributeOptional.isPresent()); + ClinicalAttribute clinicalAttribute = clinicalAttributeOptional.get(); Assert.assertEquals("study_tcga_pub", clinicalAttribute.getCancerStudyIdentifier()); Assert.assertEquals((Integer) 1, clinicalAttribute.getCancerStudyId()); Assert.assertEquals("STRING", clinicalAttribute.getDatatype()); @@ -198,9 +202,10 @@ public void getClinicalAttributeCountsBySampleIds() throws Exception { .getClinicalAttributeCountsBySampleIds(studyId, sampleIds); Assert.assertEquals(10, result.size()); - ClinicalAttributeCount clinicalAttributeCount= result.get(0); - Assert.assertEquals("RETROSPECTIVE_COLLECTION", clinicalAttributeCount.getAttrId()); - Assert.assertEquals((Integer) 1, clinicalAttributeCount.getCount()); + Optional clinicalAttributeCountOptional = + result.stream().filter(r -> r.getAttrId().equals("RETROSPECTIVE_COLLECTION")).findAny(); + Assert.assertTrue(clinicalAttributeCountOptional.isPresent()); + Assert.assertEquals((Integer) 1, clinicalAttributeCountOptional.get().getCount()); } @Test @@ -217,7 +222,9 @@ public void getClinicalAttributeCountsBySampleListId() throws Exception { Assert.assertEquals(10, result.size()); ClinicalAttributeCount clinicalAttributeCount = result.get(1); - Assert.assertEquals("OTHER_SAMPLE_ID", clinicalAttributeCount.getAttrId()); - Assert.assertEquals((Integer) 1, clinicalAttributeCount.getCount()); + Optional clinicalAttributeCountOptional = + result.stream().filter(r -> r.getAttrId().equals("OTHER_SAMPLE_ID")).findAny(); + Assert.assertTrue(clinicalAttributeCountOptional.isPresent()); + Assert.assertEquals((Integer) 1, clinicalAttributeCountOptional.get().getCount()); } } diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepositoryTest.java similarity index 88% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepositoryTest.java index 406e830c8fb..641d3399c56 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/ClinicalDataMyBatisRepositoryTest.java @@ -1,27 +1,27 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.Optional; +import java.util.stream.Collectors; + import org.cbioportal.model.ClinicalData; import org.cbioportal.model.ClinicalDataCount; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.persistence.PersistenceConstants; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; -import java.util.Optional; -import java.util.stream.Collectors; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {ClinicalDataMyBatisRepository.class, PatientMyBatisRepository.class, TestConfig.class}) public class ClinicalDataMyBatisRepositoryTest { private static int noPaging = 0; @@ -59,11 +59,14 @@ public void getAllClinicalDataOfSampleInStudyNullAttributeSummaryProjection() { "TCGA-A1-A0SB-01", null, "SUMMARY", null, null, null, null); Assert.assertEquals(4, result.size()); - ClinicalData data = result.get(0); - Assert.assertEquals("DAYS_TO_COLLECTION", data.getAttrId()); - Assert.assertEquals("276", data.getAttrValue()); - Assert.assertEquals((Integer) 1, data.getInternalId()); - Assert.assertNull(data.getClinicalAttribute()); + Optional clinicalDataOptional = + result.stream().filter(r -> r.getAttrId().equals("DAYS_TO_COLLECTION")).findAny(); + Assert.assertTrue(clinicalDataOptional.isPresent()); + ClinicalData clinicalAttribute = clinicalDataOptional.get(); + + Assert.assertEquals("276", clinicalAttribute.getAttrValue()); + Assert.assertEquals((Integer) 1, clinicalAttribute.getInternalId()); + Assert.assertNull(clinicalAttribute.getClinicalAttribute()); } @Test @@ -143,11 +146,15 @@ public void getAllClinicalDataOfPatientInStudyNullAttributeSummaryProjection() { "TCGA-A1-A0SB", null, "SUMMARY", null, null, null, null); Assert.assertEquals(3, result.size()); - ClinicalData data = result.get(0); - Assert.assertEquals("FORM_COMPLETION_DATE", data.getAttrId()); - Assert.assertEquals("2013-12-5", data.getAttrValue()); - Assert.assertEquals((Integer) 1, data.getInternalId()); - Assert.assertNull(data.getClinicalAttribute()); + + Optional clinicalDataOptional = + result.stream().filter(r -> r.getAttrId().equals("FORM_COMPLETION_DATE")).findAny(); + Assert.assertTrue(clinicalDataOptional.isPresent()); + ClinicalData clinicalAttribute = clinicalDataOptional.get(); + + Assert.assertEquals("2013-12-5", clinicalAttribute.getAttrValue()); + Assert.assertEquals((Integer) 1, clinicalAttribute.getInternalId()); + Assert.assertNull(clinicalAttribute.getClinicalAttribute()); } @Test @@ -226,7 +233,10 @@ public void getAllClinicalDataInStudyNullAttributeSummaryProjection() { null, PersistenceConstants.SAMPLE_CLINICAL_DATA_TYPE, "SUMMARY", null, null, null, null); Assert.assertEquals(8, result.size()); - ClinicalData data = result.get(0); + Optional clinicalDataOptional = + result.stream().filter(r -> r.getAttrId().equals("DAYS_TO_COLLECTION")).findAny(); + Assert.assertTrue(clinicalDataOptional.isPresent()); + ClinicalData data = clinicalDataOptional.get(); Assert.assertEquals("DAYS_TO_COLLECTION", data.getAttrId()); Assert.assertEquals("276", data.getAttrValue()); Assert.assertEquals((Integer) 1, data.getInternalId()); @@ -321,11 +331,14 @@ public void fetchAllClinicalDataInStudy() { PersistenceConstants.SAMPLE_CLINICAL_DATA_TYPE, "SUMMARY"); Assert.assertEquals(8, result.size()); - ClinicalData data = result.get(0); - Assert.assertEquals("DAYS_TO_COLLECTION", data.getAttrId()); - Assert.assertEquals("276", data.getAttrValue()); - Assert.assertEquals((Integer) 1, data.getInternalId()); - Assert.assertNull(data.getClinicalAttribute()); + Optional clinicalDataOptional = + result.stream().filter(r -> r.getAttrId().equals("DAYS_TO_COLLECTION")).findAny(); + Assert.assertTrue(clinicalDataOptional.isPresent()); + ClinicalData clinicalAttribute = clinicalDataOptional.get(); + + Assert.assertEquals("276", clinicalAttribute.getAttrValue()); + Assert.assertEquals((Integer) 1, clinicalAttribute.getInternalId()); + Assert.assertNull(clinicalAttribute.getClinicalAttribute()); } @Test @@ -344,11 +357,14 @@ public void fetchClinicalDataNullAttributeSummaryProjection() { PersistenceConstants.SAMPLE_CLINICAL_DATA_TYPE, "SUMMARY"); Assert.assertEquals(8, result.size()); - ClinicalData data = result.get(0); - Assert.assertEquals("DAYS_TO_COLLECTION", data.getAttrId()); - Assert.assertEquals("276", data.getAttrValue()); - Assert.assertEquals((Integer) 1, data.getInternalId()); - Assert.assertNull(data.getClinicalAttribute()); + Optional clinicalDataOptional = + result.stream().filter(r -> r.getAttrId().equals("DAYS_TO_COLLECTION")).findAny(); + Assert.assertTrue(clinicalDataOptional.isPresent()); + ClinicalData clinicalAttribute = clinicalDataOptional.get(); + + Assert.assertEquals("276", clinicalAttribute.getAttrValue()); + Assert.assertEquals((Integer) 1, clinicalAttribute.getInternalId()); + Assert.assertNull(clinicalAttribute.getClinicalAttribute()); } @Test diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepositoryTest.java similarity index 81% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepositoryTest.java index d44814115e9..90fe8046a9e 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/ClinicalEventMyBatisRepositoryTest.java @@ -1,14 +1,18 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.List; +import java.util.Optional; import org.cbioportal.model.ClinicalEvent; import org.cbioportal.model.ClinicalEventData; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; +import org.cbioportal.persistence.mybatis.util.MolecularProfileCaseIdentifierUtil; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; import java.util.ArrayList; @@ -21,8 +25,7 @@ import static java.util.stream.Collectors.groupingBy; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {ClinicalEventMyBatisRepository.class, MolecularProfileCaseIdentifierUtil.class, TestConfig.class}) public class ClinicalEventMyBatisRepositoryTest { @Autowired @@ -35,8 +38,12 @@ public void getAllClinicalEventsOfPatientInStudyIdProjection() throws Exception "study_tcga_pub", "TCGA-A1-A0SB", "ID", null, null, null, null); Assert.assertEquals(2, result.size()); - ClinicalEvent clinicalEvent = result.get(0); - Assert.assertEquals((Integer) 2, clinicalEvent.getClinicalEventId()); + + Optional clinicalEventOptional = + result.stream().filter(r -> r.getClinicalEventId() == 2).findAny(); + Assert.assertTrue(clinicalEventOptional.isPresent()); + ClinicalEvent clinicalEvent = clinicalEventOptional.get(); + Assert.assertEquals("study_tcga_pub", clinicalEvent.getStudyId()); Assert.assertEquals("TCGA-A1-A0SB", clinicalEvent.getPatientId()); Assert.assertEquals("SPECIMEN", clinicalEvent.getEventType()); @@ -49,8 +56,12 @@ public void getAllClinicalEventsOfPatientInStudySummaryProjection() throws Excep "study_tcga_pub", "TCGA-A1-A0SB", "SUMMARY", null, null, null, null); Assert.assertEquals(2, result.size()); - ClinicalEvent clinicalEvent = result.get(0); - Assert.assertEquals((Integer) 2, clinicalEvent.getClinicalEventId()); + + Optional clinicalEventOptional = + result.stream().filter(r -> r.getClinicalEventId() == 2).findAny(); + Assert.assertTrue(clinicalEventOptional.isPresent()); + ClinicalEvent clinicalEvent = clinicalEventOptional.get(); + Assert.assertEquals("study_tcga_pub", clinicalEvent.getStudyId()); Assert.assertEquals("TCGA-A1-A0SB", clinicalEvent.getPatientId()); Assert.assertEquals("SPECIMEN", clinicalEvent.getEventType()); @@ -65,8 +76,12 @@ public void getAllClinicalEventsOfPatientInStudyDetailedProjection() throws Exce "study_tcga_pub", "TCGA-A1-A0SB", "DETAILED", null, null, null, null); Assert.assertEquals(2, result.size()); - ClinicalEvent clinicalEvent = result.get(0); - Assert.assertEquals((Integer) 2, clinicalEvent.getClinicalEventId()); + + Optional clinicalEventOptional = + result.stream().filter(r -> r.getClinicalEventId() == 2).findAny(); + Assert.assertTrue(clinicalEventOptional.isPresent()); + ClinicalEvent clinicalEvent = clinicalEventOptional.get(); + Assert.assertEquals("study_tcga_pub", clinicalEvent.getStudyId()); Assert.assertEquals("TCGA-A1-A0SB", clinicalEvent.getPatientId()); Assert.assertEquals("SPECIMEN", clinicalEvent.getEventType()); @@ -131,7 +146,12 @@ public void getAllClinicalEventsInStudyIdProjection() throws Exception { "study_tcga_pub", "ID", null, null, null, null); Assert.assertEquals(4, result.size()); - ClinicalEvent clinicalEvent = result.get(0); + + Optional clinicalEventOptional = + result.stream().filter(r -> r.getClinicalEventId() == 2).findAny(); + Assert.assertTrue(clinicalEventOptional.isPresent()); + ClinicalEvent clinicalEvent = clinicalEventOptional.get(); + Assert.assertEquals((Integer) 2, clinicalEvent.getClinicalEventId()); Assert.assertEquals("study_tcga_pub", clinicalEvent.getStudyId()); Assert.assertEquals("SPECIMEN", clinicalEvent.getEventType()); @@ -144,8 +164,12 @@ public void getAllClinicalEventsInStudySummaryProjection() throws Exception { "study_tcga_pub", "SUMMARY", null, null, null, null); Assert.assertEquals(4, result.size()); - ClinicalEvent clinicalEvent = result.get(0); - Assert.assertEquals((Integer) 2, clinicalEvent.getClinicalEventId()); + + Optional clinicalEventOptional = + result.stream().filter(r -> r.getClinicalEventId() == 2).findAny(); + Assert.assertTrue(clinicalEventOptional.isPresent()); + ClinicalEvent clinicalEvent = clinicalEventOptional.get(); + Assert.assertEquals("study_tcga_pub", clinicalEvent.getStudyId()); Assert.assertEquals("SPECIMEN", clinicalEvent.getEventType()); Assert.assertEquals((Integer) 233, clinicalEvent.getStartDate()); @@ -159,8 +183,12 @@ public void getAllClinicalEventsInStudyDetailedProjection() throws Exception { "study_tcga_pub", "DETAILED", null, null, null, null); Assert.assertEquals(4, result.size()); - ClinicalEvent clinicalEvent = result.get(0); - Assert.assertEquals((Integer) 2, clinicalEvent.getClinicalEventId()); + + Optional clinicalEventOptional = + result.stream().filter(r -> r.getClinicalEventId() == 2).findAny(); + Assert.assertTrue(clinicalEventOptional.isPresent()); + ClinicalEvent clinicalEvent = clinicalEventOptional.get(); + Assert.assertEquals("study_tcga_pub", clinicalEvent.getStudyId()); Assert.assertEquals("SPECIMEN", clinicalEvent.getEventType()); Assert.assertEquals((Integer) 233, clinicalEvent.getStartDate()); diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepositoryTest.java similarity index 96% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepositoryTest.java index 8b91b96ae35..38a7720a823 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/CopyNumberSegmentMyBatisRepositoryTest.java @@ -1,22 +1,20 @@ package org.cbioportal.persistence.mybatis; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.CopyNumberSeg; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {CopyNumberSegmentMyBatisRepository.class, TestConfig.class}) public class CopyNumberSegmentMyBatisRepositoryTest { @Autowired @@ -89,15 +87,15 @@ public void fetchSamplesWithCopyNumberSegments() throws Exception { ); Assert.assertEquals(2, result0.size()); - Assert.assertEquals((Integer)1, result0.get(0)); - Assert.assertEquals((Integer)15, result0.get(1)); + Assert.assertEquals((Integer)1, result0.get(1)); + Assert.assertEquals((Integer)15, result0.get(0)); Assert.assertEquals(1, result1.size()); Assert.assertEquals((Integer)1, result1.get(0)); Assert.assertEquals(2, result2.size()); - Assert.assertEquals((Integer)1, result2.get(0)); - Assert.assertEquals((Integer)15, result2.get(1)); + Assert.assertEquals((Integer)1, result2.get(1)); + Assert.assertEquals((Integer)15, result2.get(0)); Assert.assertEquals(0, result3.size()); } diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepositoryTest.java similarity index 88% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepositoryTest.java index b6c299e24d2..585463834d3 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/CosmicCountMyBatisRepositoryTest.java @@ -2,19 +2,17 @@ import java.util.ArrayList; import java.util.List; - import org.cbioportal.model.CosmicMutation; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {CosmicCountMyBatisRepository.class, TestConfig.class}) public class CosmicCountMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepositoryTest.java similarity index 90% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepositoryTest.java index 1a285539d93..1bce1c32c8a 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/DataAccessTokenMyBatisRepositoryTest.java @@ -1,23 +1,21 @@ package org.cbioportal.persistence.mybatis; +import java.util.Calendar; +import java.util.Date; +import java.util.List; +import java.util.UUID; import org.cbioportal.model.DataAccessToken; -import org.cbioportal.model.ClinicalDataCount; -import org.cbioportal.model.meta.BaseMeta; -import org.cbioportal.persistence.PersistenceConstants; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; -import org.springframework.transaction.annotation.Transactional; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.concurrent.TimeUnit; -import java.util.*; +import org.springframework.transaction.annotation.Transactional; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {DataAccessTokenMyBatisRepository.class, TestConfig.class}) public class DataAccessTokenMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepositoryTest.java similarity index 99% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepositoryTest.java index 89a3fe0dbbf..ef098188c8c 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/DiscreteCopyNumberMyBatisRepositoryTest.java @@ -1,5 +1,9 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Comparator; +import java.util.List; import org.cbioportal.model.CNA; import org.cbioportal.model.CopyNumberCountByGene; import org.cbioportal.model.DiscreteCopyNumberData; @@ -8,23 +12,17 @@ import org.cbioportal.model.ReferenceGenomeGene; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.model.util.Select; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Comparator; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {DiscreteCopyNumberMyBatisRepository.class, ReferenceGenomeGeneMyBatisRepository.class, TestConfig.class}) public class DiscreteCopyNumberMyBatisRepositoryTest { // mutation, cna and struct var events in testSql.sql diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepositoryTest.java similarity index 97% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepositoryTest.java index 9d3aff17b74..796bb0348aa 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/GeneMyBatisRepositoryTest.java @@ -32,22 +32,20 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.Gene; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {GeneMyBatisRepository.class, TestConfig.class}) public class GeneMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepositoryTest.java similarity index 96% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepositoryTest.java index 8f32d861c9e..3e51b7bf9e5 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/GenePanelMyBatisRepositoryTest.java @@ -1,25 +1,23 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.GenePanel; import org.cbioportal.model.GenePanelData; import org.cbioportal.model.GenePanelToGene; import org.cbioportal.model.MolecularProfileCaseIdentifier; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {GenePanelMyBatisRepository.class, TestConfig.class}) public class GenePanelMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepositoryTest.java similarity index 90% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepositoryTest.java index ccff2d375c6..98dcdb0c8d6 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/GenericAssayMyBatisRepositoryTest.java @@ -3,20 +3,18 @@ import java.util.Arrays; import java.util.List; - import org.cbioportal.model.GenericAssayAdditionalProperty; import org.cbioportal.model.meta.GenericAssayMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {GenericAssayMyBatisRepository.class, TestConfig.class}) public class GenericAssayMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepositoryTest.java similarity index 95% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepositoryTest.java index bc1e76ee8d4..8b27fe13768 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/GenesetHierarchyMyBatisRepositoryTest.java @@ -2,20 +2,18 @@ import java.util.Arrays; import java.util.List; - import org.cbioportal.model.Geneset; import org.cbioportal.model.GenesetHierarchyInfo; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {GenesetHierarchyMyBatisRepository.class, TestConfig.class}) public class GenesetHierarchyMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepositoryTest.java similarity index 96% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepositoryTest.java index 710463f4678..7580baf8393 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/GenesetMyBatisRepositoryTest.java @@ -32,24 +32,22 @@ package org.cbioportal.persistence.mybatis; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.Gene; import org.cbioportal.model.Geneset; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.persistence.PersistenceConstants; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.Arrays; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {GenesetMyBatisRepository.class, TestConfig.class}) public class GenesetMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepositoryTest.java similarity index 96% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepositoryTest.java index 9e6593791d3..d3241bcd6cd 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/MolecularDataMyBatisRepositoryTest.java @@ -1,24 +1,24 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.List; +import java.util.Map; +import java.util.stream.Collectors; +import java.util.stream.Stream; import org.cbioportal.model.GeneMolecularAlteration; import org.cbioportal.model.GenesetMolecularAlteration; import org.cbioportal.model.MolecularProfileSamples; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.transaction.annotation.Transactional; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -import java.util.*; -import java.util.stream.Collectors; -import java.util.stream.Stream; +import org.springframework.transaction.annotation.Transactional; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {MolecularDataMyBatisRepository.class, TestConfig.class}) public class MolecularDataMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepositoryTest.java similarity index 98% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepositoryTest.java index 986c734c89d..2b4db775c3d 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/MolecularProfileMyBatisRepositoryTest.java @@ -1,26 +1,24 @@ package org.cbioportal.persistence.mybatis; +import java.util.Arrays; +import java.util.List; +import java.util.stream.Collectors; +import java.util.stream.Stream; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.MolecularProfile; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.Arrays; -import java.util.List; -import java.util.stream.Collectors; -import java.util.stream.Stream; - import static org.junit.Assert.assertArrayEquals; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {MolecularProfileMyBatisRepository.class, TestConfig.class}) public class MolecularProfileMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepositoryTest.java similarity index 93% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepositoryTest.java index 6f13f7b9ff3..4919a9e4a8f 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepositoryTest.java @@ -1,5 +1,11 @@ package org.cbioportal.persistence.mybatis; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.Optional; +import java.util.stream.Collectors; import org.cbioportal.model.AlleleSpecificCopyNumber; import org.cbioportal.model.Gene; import org.cbioportal.model.GeneFilterQuery; @@ -7,13 +13,14 @@ import org.cbioportal.model.MutationCountByPosition; import org.cbioportal.model.meta.MutationMeta; import org.cbioportal.model.util.Select; +import org.cbioportal.persistence.mybatis.config.TestConfig; +import org.cbioportal.persistence.mybatis.util.MolecularProfileCaseIdentifierUtil; import org.junit.Assert; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; import java.util.ArrayList; @@ -21,8 +28,7 @@ import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {MutationMyBatisRepository.class, MolecularProfileCaseIdentifierUtil.class, TestConfig.class}) public class MutationMyBatisRepositoryTest { // mutation, cna and struct var events in testSql.sql @@ -114,9 +120,13 @@ public void getMutationsInMolecularProfileBySampleListIdSummaryProjection() thro "study_tcga_pub_mutations", "study_tcga_pub_all", null, null, "SUMMARY", null, null, null, null); Assert.assertEquals(8, result.size()); - Mutation mutation = result.get(0); + + Optional mutationOptional = + result.stream().filter(r -> r.getSampleId().equals("TCGA-A1-A0SB-01")).findAny(); + Assert.assertTrue(mutationOptional.isPresent()); + Mutation mutation = mutationOptional.get(); + Assert.assertEquals("study_tcga_pub_mutations", mutation.getMolecularProfileId()); - Assert.assertEquals("TCGA-A1-A0SB-01", mutation.getSampleId()); Assert.assertEquals((Integer) 207, mutation.getEntrezGeneId()); Assert.assertEquals("cyclases/Protein", mutation.getAminoAcidChange()); Assert.assertEquals("genome.wustl.edu", mutation.getCenter()); @@ -155,7 +165,11 @@ public void getMutationsInMolecularProfileBySampleListIdAndEntrezGeneIdsSummaryP "study_tcga_pub_mutations", "study_tcga_pub_all", entrezGeneIds, null, "SUMMARY", null, null, null, null); Assert.assertEquals(3, result.size()); - Mutation mutation = result.get(0); + Optional mutationOptional = + result.stream().filter(r -> r.getSampleId().equals("TCGA-A1-A0SB-01")).findAny(); + Assert.assertTrue(mutationOptional.isPresent()); + Mutation mutation = mutationOptional.get(); + Assert.assertEquals("study_tcga_pub_mutations", mutation.getMolecularProfileId()); Assert.assertEquals("TCGA-A1-A0SB-01", mutation.getSampleId()); Assert.assertEquals((Integer) 207, mutation.getEntrezGeneId()); @@ -192,7 +206,12 @@ public void getMutationsInMolecularProfileBySampleListIdDetailedProjection() thr "study_tcga_pub_mutations", "study_tcga_pub_all", null, null, "DETAILED", null, null, null, null); Assert.assertEquals(8, result.size()); - Mutation mutation = result.get(0); + + Optional mutationOptional = + result.stream().filter(r -> r.getSampleId().equals("TCGA-A1-A0SB-01")).findAny(); + Assert.assertTrue(mutationOptional.isPresent()); + Mutation mutation = mutationOptional.get(); + Assert.assertEquals("study_tcga_pub_mutations", mutation.getMolecularProfileId()); Assert.assertEquals("TCGA-A1-A0SB-01", mutation.getSampleId()); Assert.assertEquals((Integer) 207, mutation.getEntrezGeneId()); @@ -297,15 +316,16 @@ public void getMutationsInMultipleMolecularProfiles() throws Exception { Assert.assertEquals(3, result.size()); - Mutation mutation1 = result.get(2); - Assert.assertEquals("study_tcga_pub_mutations", mutation1.getMolecularProfileId()); - Assert.assertEquals("TCGA-A1-A0SH-01", mutation1.getSampleId()); - Mutation mutation2 = result.get(1); - Assert.assertEquals("study_tcga_pub_mutations", mutation2.getMolecularProfileId()); - Assert.assertEquals("TCGA-A1-A0SH-01", mutation2.getSampleId()); - Mutation mutation3 = result.get(0); - Assert.assertEquals("acc_tcga_mutations", mutation3.getMolecularProfileId()); - Assert.assertEquals("TCGA-A1-B0SO-01", mutation3.getSampleId()); + Optional sampleOmutationOptional = + result.stream().filter(r -> r.getSampleId().equals("TCGA-A1-B0SO-01") && r.getMolecularProfileId().equals("acc_tcga_mutations")).findAny(); + + List sampleHmutations = result.stream().filter( + r -> r.getSampleId().equals("TCGA-A1-A0SH-01") && + r.getMolecularProfileId().equals("study_tcga_pub_mutations")).collect( + Collectors.toList()); + + Assert.assertEquals(2, sampleHmutations.size()); + Assert.assertTrue(sampleOmutationOptional.isPresent()); } @Test @@ -404,7 +424,7 @@ public void getMutationsInMultipleMolecularProfilesByGeneQueriesIncludeOnlyDrive Assert.assertEquals(4, result.size()); List expectedSampleIds = Arrays.asList("TCGA-A1-A0SB-01", "TCGA-A1-A0SH-01", "TCGA-A1-A0SI-01", "TCGA-A1-A0SP-01"); - assert(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); + Assert.assertTrue(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); } @Test @@ -426,7 +446,7 @@ public void getMutationsInMultipleMolecularProfilesByGeneQueriesIncludeOnlyVUS() Assert.assertEquals(4, result.size()); List expectedSampleIds = Arrays.asList("TCGA-A1-A0SD-01", "TCGA-A1-A0SE-01", "TCGA-A1-A0SH-01", "TCGA-A1-A0SO-01"); - assert(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); + Assert.assertTrue(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); } @Test @@ -468,7 +488,7 @@ public void getMutationsInMultipleMolecularProfilesByGeneQueriesFilterTiers() th Assert.assertEquals(3, result.size()); List expectedSampleIds = Arrays.asList("TCGA-A1-A0SD-01", "TCGA-A1-A0SH-01", "TCGA-A1-A0SI-01"); - assert(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); + Assert.assertTrue(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); } @Test @@ -490,7 +510,7 @@ public void getMutationsInMultipleMolecularProfilesByGeneQueriesMixed() throws E Assert.assertEquals(3, result.size()); List expectedSampleIds = Arrays.asList("TCGA-A1-A0SB-01", "TCGA-A1-A0SH-01", "TCGA-A1-A0SO-01"); - assert(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); + Assert.assertTrue(result.stream().allMatch(r -> expectedSampleIds.contains(r.getSampleId()))); } @Test diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepositoryTest.java similarity index 95% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepositoryTest.java index b51906aca22..3661a80043e 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/PatientMyBatisRepositoryTest.java @@ -1,25 +1,23 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; +import java.util.stream.Collectors; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.Patient; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.List; -import java.util.stream.Collectors; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {PatientMyBatisRepository.class, TestConfig.class}) public class PatientMyBatisRepositoryTest { @Autowired @@ -213,7 +211,9 @@ public void getPatientIdsOfSamples() throws Exception { Arrays.asList("TCGA-A1-A0SB-01", "TCGA-A1-A0SD-01", "TCGA-A1-A0SB-02")); Assert.assertEquals(2, result.size()); - Assert.assertEquals("TCGA-A1-A0SD", result.get(0).getStableId()); - Assert.assertEquals("TCGA-A1-A0SB", result.get(1).getStableId()); + List stableIds = + result.stream().map(r -> r.getStableId()).collect(Collectors.toList()); + Assert.assertTrue(stableIds.contains("TCGA-A1-A0SD")); + Assert.assertTrue(stableIds.contains("TCGA-A1-A0SB")); } } diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepositoryTest.java similarity index 92% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepositoryTest.java index 448fd58c6f3..939548f1135 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/ReferenceGenomeGeneMyBatisRepositoryTest.java @@ -1,22 +1,20 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.List; +import org.cbioportal.model.Gene; import org.cbioportal.model.ReferenceGenome; import org.cbioportal.model.ReferenceGenomeGene; -import org.cbioportal.model.Gene; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {ReferenceGenomeGeneMyBatisRepository.class, GeneMyBatisRepository.class, TestConfig.class}) public class ReferenceGenomeGeneMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepositoryTest.java similarity index 98% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepositoryTest.java index f4a9f43d2eb..9103ba5fc7d 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/SampleListMyBatisRepositoryTest.java @@ -1,22 +1,20 @@ package org.cbioportal.persistence.mybatis; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.SampleList; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.Arrays; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {SampleListMyBatisRepository.class, TestConfig.class}) public class SampleListMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepositoryTest.java similarity index 98% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepositoryTest.java index 31cbb307f00..1d4614cecd4 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/SampleMyBatisRepositoryTest.java @@ -1,26 +1,24 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; +import java.util.stream.Collectors; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.Patient; import org.cbioportal.model.Sample; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.List; -import java.util.stream.Collectors; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {SampleMyBatisRepository.class, TestConfig.class}) public class SampleMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepositoryTest.java similarity index 95% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepositoryTest.java index fe9b2419e5e..197afb2dc6b 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/SignificantCopyNumberRegionMyBatisRepositoryTest.java @@ -1,23 +1,21 @@ package org.cbioportal.persistence.mybatis; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.Gistic; import org.cbioportal.model.GisticToGene; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {SignificantCopyNumberRegionMyBatisRepository.class, TestConfig.class}) public class SignificantCopyNumberRegionMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepositoryTest.java similarity index 95% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepositoryTest.java index 77185e15e6a..3d92ac2ff52 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/SignificantlyMutatedGeneMyBatisRepositoryTest.java @@ -1,21 +1,19 @@ package org.cbioportal.persistence.mybatis; +import java.math.BigDecimal; +import java.util.List; import org.cbioportal.model.MutSig; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.math.BigDecimal; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {SignificantlyMutatedGeneMyBatisRepository.class, TestConfig.class}) public class SignificantlyMutatedGeneMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepositoryTest.java similarity index 98% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepositoryTest.java index 72f882290e4..149d2327f01 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/StructuralVariantMyBatisRepositoryTest.java @@ -23,6 +23,10 @@ package org.cbioportal.persistence.mybatis; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.stream.Collectors; import org.cbioportal.model.GeneFilterQuery; import org.cbioportal.model.StructuralVariantFilterQuery; import org.cbioportal.model.StructuralVariant; @@ -30,13 +34,14 @@ import org.cbioportal.model.StructuralVariantQuery; import org.cbioportal.model.StructuralVariantSpecialValue; import org.cbioportal.model.util.Select; +import org.cbioportal.persistence.mybatis.config.TestConfig; +import org.cbioportal.persistence.mybatis.util.MolecularProfileCaseIdentifierUtil; import org.junit.Assert; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; import java.util.ArrayList; @@ -47,8 +52,8 @@ import java.util.stream.Collectors; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {StructuralVariantMyBatisRepository.class, StructuralVariantMapper.class, + MolecularProfileCaseIdentifierUtil.class, TestConfig.class}) public class StructuralVariantMyBatisRepositoryTest { // struct var events in testSql.sql diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepositoryTest.java similarity index 98% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepositoryTest.java index 86a194942b3..f3bd2772229 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/StudyMyBatisRepositoryTest.java @@ -1,25 +1,23 @@ package org.cbioportal.persistence.mybatis; +import java.text.SimpleDateFormat; +import java.util.Arrays; +import java.util.List; +import java.util.TimeZone; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.CancerStudyTags; import org.cbioportal.model.TypeOfCancer; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.text.SimpleDateFormat; -import java.util.Arrays; -import java.util.List; -import java.util.TimeZone; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {StudyMyBatisRepository.class, TestConfig.class}) public class StudyMyBatisRepositoryTest { @Autowired diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepositoryTest.java similarity index 94% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepositoryTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepositoryTest.java index e61e23cb807..99f518f9a27 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepositoryTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/TreatmentMyBatisRepositoryTest.java @@ -1,23 +1,26 @@ package org.cbioportal.persistence.mybatis; +import java.util.Arrays; +import java.util.Collections; +import java.util.HashMap; +import java.util.List; +import java.util.Map; import org.cbioportal.model.ClinicalEventSample; import org.cbioportal.model.Treatment; import org.cbioportal.model.ClinicalEventKeyCode; import org.cbioportal.persistence.TreatmentRepository; +import org.cbioportal.persistence.mybatis.config.TestConfig; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Configurable; -import org.springframework.test.context.ContextConfiguration; +import org.springframework.boot.test.context.SpringBootTest; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import java.util.*; - @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration("/testContextDatabase.xml") -@Configurable +@SpringBootTest(classes = {TreatmentMyBatisRepository.class, TestConfig.class}) public class TreatmentMyBatisRepositoryTest { + @Autowired TreatmentRepository treatmentRepository; diff --git a/src/test/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepositoryTest.java b/src/test/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepositoryTest.java new file mode 100644 index 00000000000..1dd6b241105 --- /dev/null +++ b/src/test/java/org/cbioportal/persistence/mybatis/VariantCountMyBatisRepositoryTest.java @@ -0,0 +1,50 @@ +package org.cbioportal.persistence.mybatis; + +import java.util.Arrays; +import java.util.List; +import java.util.Optional; +import org.cbioportal.model.VariantCount; +import org.cbioportal.persistence.mybatis.config.TestConfig; +import org.junit.Assert; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +@RunWith(SpringJUnit4ClassRunner.class) +@SpringBootTest(classes = {VariantCountMyBatisRepository.class, TestConfig.class}) +public class VariantCountMyBatisRepositoryTest { + + @Autowired + private VariantCountMyBatisRepository variantCountMyBatisRepository; + + @Test + public void fetchVariantCounts() throws Exception { + + List result = variantCountMyBatisRepository.fetchVariantCounts("study_tcga_pub_mutations", + Arrays.asList(207, 207, 369), Arrays.asList("AKT1 truncating", null, "ARAF G1513 missense")); + + Assert.assertEquals(3, result.size()); + + Optional variantCountOptional = + result.stream().filter(r -> r.getKeyword() == null).findAny(); + Assert.assertTrue(variantCountOptional.isPresent()); + VariantCount variantCount1 = variantCountOptional.get(); + + Assert.assertEquals("study_tcga_pub_mutations", variantCount1.getMolecularProfileId()); + Assert.assertEquals((Integer) 207, variantCount1.getEntrezGeneId()); + Assert.assertEquals((Integer) 21, variantCount1.getNumberOfSamplesWithKeyword()); + Assert.assertEquals((Integer) 22, variantCount1.getNumberOfSamplesWithMutationInGene()); + + variantCountOptional = + result.stream().filter(r -> r.getKeyword().equals("AKT1 truncating")).findAny(); + Assert.assertTrue(variantCountOptional.isPresent()); + VariantCount variantCount2 = variantCountOptional.get(); + + Assert.assertEquals("study_tcga_pub_mutations", variantCount2.getMolecularProfileId()); + Assert.assertEquals((Integer) 207, variantCount2.getEntrezGeneId()); + Assert.assertEquals((Integer) 54, variantCount2.getNumberOfSamplesWithKeyword()); + Assert.assertEquals((Integer) 64, variantCount2.getNumberOfSamplesWithMutationInGene()); + } +} diff --git a/src/test/java/org/cbioportal/persistence/mybatis/config/TestConfig.java b/src/test/java/org/cbioportal/persistence/mybatis/config/TestConfig.java new file mode 100644 index 00000000000..91d75324a18 --- /dev/null +++ b/src/test/java/org/cbioportal/persistence/mybatis/config/TestConfig.java @@ -0,0 +1,68 @@ +package org.cbioportal.persistence.mybatis.config; + +import javax.sql.DataSource; + +import org.apache.ibatis.io.Resources; +import org.apache.ibatis.mapping.DatabaseIdProvider; +import org.apache.ibatis.mapping.VendorDatabaseIdProvider; +import org.apache.ibatis.session.SqlSessionFactory; +import org.cbioportal.persistence.mybatis.typehandler.SampleTypeTypeHandler; +import org.cbioportal.persistence.mybatis.util.OffsetCalculator; +import org.mybatis.spring.SqlSessionFactoryBean; +import org.mybatis.spring.annotation.MapperScan; +import org.springframework.boot.test.context.TestConfiguration; +import org.springframework.context.annotation.Bean; +import org.springframework.jdbc.datasource.DataSourceTransactionManager; +import org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseBuilder; +import org.springframework.jdbc.datasource.embedded.EmbeddedDatabaseType; +import org.springframework.transaction.PlatformTransactionManager; + +import java.io.InputStream; +import java.util.Properties; + +@TestConfiguration +@MapperScan("org.cbioportal.persistence.mybatis") +public class TestConfig { + + @Bean + public DataSource dataSource() { + return new EmbeddedDatabaseBuilder() + .setType(EmbeddedDatabaseType.H2) + .setName("testdb;DATABASE_TO_UPPER=false;MODE=MYSQL;NON_KEYWORDS=END,KEY,VALUE") + .addScript("cgds-h2.sql") + .addScript("testSql.sql") + .build(); + } + + @Bean + public SqlSessionFactory sqlSessionFactory() throws Exception { + SqlSessionFactoryBean factoryBean = new SqlSessionFactoryBean(); + factoryBean.setDataSource(dataSource()); + // mapper that mediate string to enum conversions + factoryBean.setTypeHandlers(new SampleTypeTypeHandler()); + // Create a MyBatis Configuration object + org.apache.ibatis.session.Configuration configuration = new org.apache.ibatis.session.Configuration(); + + // Set your custom DatabaseIdProvider + DatabaseIdProvider databaseIdProvider = new VendorDatabaseIdProvider(); + Properties properties = new Properties(); + // Set your database-to-databaseId mapping in the properties + properties.setProperty("MySQL", "mysql"); + properties.setProperty("H2", "h2"); + // Add more mappings as needed + databaseIdProvider.setProperties(properties); + factoryBean.setDatabaseIdProvider(databaseIdProvider); + return factoryBean.getObject(); + } + + @Bean + public OffsetCalculator offsetCalculator() { + return new OffsetCalculator(); + } + + @Bean + public PlatformTransactionManager platformTransactionManager() { + return new DataSourceTransactionManager(dataSource()); + } + +} diff --git a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtilTest.java b/src/test/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtilTest.java similarity index 99% rename from persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtilTest.java rename to src/test/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtilTest.java index 954932657a8..7163f5300db 100644 --- a/persistence/persistence-mybatis/src/test/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtilTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatis/util/MolecularProfileCaseIdentifierUtilTest.java @@ -1,16 +1,15 @@ package org.cbioportal.persistence.mybatis.util; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Map; +import java.util.Set; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.InjectMocks; import org.mockito.junit.MockitoJUnitRunner; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Map; -import java.util.Set; - @RunWith(MockitoJUnitRunner.class) public class MolecularProfileCaseIdentifierUtilTest { @InjectMocks diff --git a/web/src/test/java/org/cbioportal/persistence/util/CustomKeyGeneratorTest.java b/src/test/java/org/cbioportal/persistence/util/CustomKeyGeneratorTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/CustomKeyGeneratorTest.java rename to src/test/java/org/cbioportal/persistence/util/CustomKeyGeneratorTest.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheIntegrationTest.java b/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheIntegrationTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheIntegrationTest.java rename to src/test/java/org/cbioportal/persistence/util/CustomRedisCacheIntegrationTest.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheManagerTest.java b/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheManagerTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheManagerTest.java rename to src/test/java/org/cbioportal/persistence/util/CustomRedisCacheManagerTest.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheTest.java b/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/CustomRedisCacheTest.java rename to src/test/java/org/cbioportal/persistence/util/CustomRedisCacheTest.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/EhCacheUtilsTest.java b/src/test/java/org/cbioportal/persistence/util/EhCacheUtilsTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/EhCacheUtilsTest.java rename to src/test/java/org/cbioportal/persistence/util/EhCacheUtilsTest.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/RedisCacheUtilsTest.java b/src/test/java/org/cbioportal/persistence/util/RedisCacheUtilsTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/RedisCacheUtilsTest.java rename to src/test/java/org/cbioportal/persistence/util/RedisCacheUtilsTest.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/fakeclient/MockInMemoryRedissonClient.java b/src/test/java/org/cbioportal/persistence/util/fakeclient/MockInMemoryRedissonClient.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/fakeclient/MockInMemoryRedissonClient.java rename to src/test/java/org/cbioportal/persistence/util/fakeclient/MockInMemoryRedissonClient.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/fakeclient/MockRBucket.java b/src/test/java/org/cbioportal/persistence/util/fakeclient/MockRBucket.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/fakeclient/MockRBucket.java rename to src/test/java/org/cbioportal/persistence/util/fakeclient/MockRBucket.java diff --git a/web/src/test/java/org/cbioportal/persistence/util/fakeclient/MockRKeys.java b/src/test/java/org/cbioportal/persistence/util/fakeclient/MockRKeys.java similarity index 100% rename from web/src/test/java/org/cbioportal/persistence/util/fakeclient/MockRKeys.java rename to src/test/java/org/cbioportal/persistence/util/fakeclient/MockRKeys.java diff --git a/web/src/test/java/org/cbioportal/proxy/MonkifierTest.java b/src/test/java/org/cbioportal/proxy/MonkifierTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/proxy/MonkifierTest.java rename to src/test/java/org/cbioportal/proxy/MonkifierTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/AlterationCountServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/AlterationCountServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/AlterationCountServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/AlterationCountServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/AlterationDriverAnnotationServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/AlterationEnrichmentServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/BaseServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/BaseServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/BaseServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/BaseServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/CacheServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/CacheServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/CacheServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/CacheServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/CancerTypeServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/CancerTypeServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/CancerTypeServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/CancerTypeServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/ClinicalAttributeServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ClinicalAttributeServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/ClinicalAttributeServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ClinicalAttributeServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/ClinicalDataServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ClinicalDataServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/ClinicalDataServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ClinicalDataServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/ClinicalEventServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ClinicalEventServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/ClinicalEventServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ClinicalEventServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/CoExpressionServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/CoExpressionServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/CoExpressionServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/CoExpressionServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/CopyNumberSegmentServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/CosmicCountServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/CosmicCountServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/CosmicCountServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/CosmicCountServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImplTest.java similarity index 99% rename from service/src/test/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImplTest.java index a777176e26a..280cd706adf 100644 --- a/service/src/test/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImplTest.java +++ b/src/test/java/org/cbioportal/service/impl/ExpressionEnrichmentServiceImplTest.java @@ -299,7 +299,7 @@ public void getGenericAssayPatientLevelEnrichments() throws Exception { sample5.setPatientId(4); samples.add(sample5); - Mockito.when(sampleService.fetchSamples(Arrays.asList(STUDY_ID, STUDY_ID, STUDY_ID, STUDY_ID, STUDY_ID), Arrays.asList(SAMPLE_ID3, SAMPLE_ID4, SAMPLE_ID5, SAMPLE_ID1, SAMPLE_ID2), "ID")).thenReturn(samples); + Mockito.when(sampleService.fetchSamples(Arrays.asList(STUDY_ID, STUDY_ID, STUDY_ID, STUDY_ID, STUDY_ID), Arrays.asList(SAMPLE_ID3, SAMPLE_ID4, SAMPLE_ID5, SAMPLE_ID1, SAMPLE_ID2), "SUMMARY")).thenReturn(samples); List result = enrichmentServiceImpl.getGenericAssayNumericalEnrichments(MOLECULAR_PROFILE_ID, molecularProfilePatientLevelCaseSets, EnrichmentType.SAMPLE); diff --git a/service/src/test/java/org/cbioportal/service/impl/GeneMemoizerServiceTest.java b/src/test/java/org/cbioportal/service/impl/GeneMemoizerServiceTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GeneMemoizerServiceTest.java rename to src/test/java/org/cbioportal/service/impl/GeneMemoizerServiceTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GenePanelServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/GenePanelServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GenePanelServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/GenePanelServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GeneServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/GeneServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GeneServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/GeneServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GenericAssayEnrichmentServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/GenericAssayEnrichmentServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GenericAssayEnrichmentServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/GenericAssayEnrichmentServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GenericAssayServiceImpTest.java b/src/test/java/org/cbioportal/service/impl/GenericAssayServiceImpTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GenericAssayServiceImpTest.java rename to src/test/java/org/cbioportal/service/impl/GenericAssayServiceImpTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GenesetCorrelationServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/GenesetCorrelationServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GenesetCorrelationServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/GenesetCorrelationServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GenesetDataServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/GenesetDataServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GenesetDataServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/GenesetDataServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GenesetHierarchyServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/GenesetHierarchyServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GenesetHierarchyServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/GenesetHierarchyServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/GenesetServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/GenesetServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/GenesetServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/GenesetServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/MolecularDataServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/MolecularDataServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/MolecularDataServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/MolecularDataServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/MolecularProfileServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/MolecularProfileServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/MolecularProfileServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/MolecularProfileServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/MrnaPercentileServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/MrnaPercentileServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/MrnaPercentileServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/MrnaPercentileServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/MutationServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/MutationServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/MutationServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/MutationServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/MutationSpectrumServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/MutationSpectrumServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/MutationSpectrumServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/MutationSpectrumServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/PatientServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/PatientServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/PatientServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/PatientServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/ReadPermissionServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ReadPermissionServiceImplTest.java similarity index 99% rename from service/src/test/java/org/cbioportal/service/impl/ReadPermissionServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ReadPermissionServiceImplTest.java index 59de0fcbf37..5f781f0d9ce 100644 --- a/service/src/test/java/org/cbioportal/service/impl/ReadPermissionServiceImplTest.java +++ b/src/test/java/org/cbioportal/service/impl/ReadPermissionServiceImplTest.java @@ -29,10 +29,10 @@ public class ReadPermissionServiceImplTest { @Mock private CancerStudyPermissionEvaluator cancerStudyPermissionEvaluator; - + Authentication authentication; List cancerStudies; - + @Before public void init() { CancerStudy cancerStudy1 = new CancerStudy(); @@ -43,14 +43,14 @@ public void init() { authentication = mock(Authentication.class); when(cancerStudyPermissionEvaluator.hasPermission(any(), any(), eq(AccessLevel.READ))).thenReturn(false, true); } - + @Test public void setReadPermissionSuccess() { readPermissionService.setReadPermission(cancerStudies, authentication); Assert.assertFalse(cancerStudies.get(0).getReadPermission()); Assert.assertTrue(cancerStudies.get(1).getReadPermission()); } - + @Test public void setReadPermissionUnAuthenticatedPortal() { ReflectionTestUtils.setField(readPermissionService, "cancerStudyPermissionEvaluator", null); @@ -59,7 +59,7 @@ public void setReadPermissionUnAuthenticatedPortal() { Assert.assertTrue(cancerStudies.get(1).getReadPermission()); ReflectionTestUtils.setField(readPermissionService, "cancerStudyPermissionEvaluator", cancerStudyPermissionEvaluator); } - + @Test public void setReadPermissionNoAuthObject() { readPermissionService.setReadPermission(cancerStudies, null); diff --git a/service/src/test/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ReferenceGenomeGeneServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/SampleListServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/SampleListServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/SampleListServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/SampleListServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/SampleServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/SampleServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/SampleServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/SampleServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/ServerStatusServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ServerStatusServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/ServerStatusServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ServerStatusServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/SignificantCopyNumberRegionServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/SignificantlyMutatedGeneServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/StaticDataTimestampServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/StaticDataTimestampServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/StaticDataTimestampServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/StaticDataTimestampServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/StructuralVariantServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/StructuralVariantServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/StructuralVariantServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/StructuralVariantServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/StudyServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/StudyServiceImplTest.java similarity index 95% rename from service/src/test/java/org/cbioportal/service/impl/StudyServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/StudyServiceImplTest.java index 138a6d50a25..ae97ac38e4c 100644 --- a/service/src/test/java/org/cbioportal/service/impl/StudyServiceImplTest.java +++ b/src/test/java/org/cbioportal/service/impl/StudyServiceImplTest.java @@ -20,8 +20,6 @@ import java.util.List; import static org.mockito.ArgumentMatchers.any; -import static org.mockito.Mockito.*; -import static org.mockito.Mockito.times; import static org.mockito.Mockito.when; @RunWith(MockitoJUnitRunner.class) @@ -29,13 +27,14 @@ public class StudyServiceImplTest extends BaseServiceImplTest { @InjectMocks private StudyServiceImpl studyService; + + @Mock + private ReadPermissionService readPermissionService; @Mock private StudyRepository studyRepository; @Mock private CancerTypeService cancerTypeService; - @Mock - private ReadPermissionService readPermissionService; @Test public void getAllStudies() throws Exception { @@ -52,7 +51,6 @@ public void getAllStudies() throws Exception { List result = studyService.getAllStudies(KEYWORD, PROJECTION, PAGE_SIZE, PAGE_NUMBER, SORT, DIRECTION, null, AccessLevel.READ); Assert.assertEquals(expectedCancerStudyList.get(0), result.get(0)); - verify(readPermissionService, times(1)).setReadPermission(any(), any()); } @Test diff --git a/service/src/test/java/org/cbioportal/service/impl/StudyViewServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/StudyViewServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/StudyViewServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/StudyViewServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/TreatmentServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/TreatmentServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/TreatmentServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/TreatmentServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestConfiguration.java b/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestConfiguration.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestConfiguration.java rename to src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestConfiguration.java diff --git a/service/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestFiveTokenLimit.java b/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestFiveTokenLimit.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestFiveTokenLimit.java rename to src/test/java/org/cbioportal/service/impl/UuidDataAccessTokenServiceImplTestFiveTokenLimit.java diff --git a/service/src/test/java/org/cbioportal/service/impl/VariantCountServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/VariantCountServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/VariantCountServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/VariantCountServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/impl/ViolinPlotServiceImplTest.java b/src/test/java/org/cbioportal/service/impl/ViolinPlotServiceImplTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/impl/ViolinPlotServiceImplTest.java rename to src/test/java/org/cbioportal/service/impl/ViolinPlotServiceImplTest.java diff --git a/service/src/test/java/org/cbioportal/service/util/AlterationEnrichmentUtilTest.java b/src/test/java/org/cbioportal/service/util/AlterationEnrichmentUtilTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/util/AlterationEnrichmentUtilTest.java rename to src/test/java/org/cbioportal/service/util/AlterationEnrichmentUtilTest.java diff --git a/service/src/test/java/org/cbioportal/service/util/CoExpressionAsyncMethodsTest.java b/src/test/java/org/cbioportal/service/util/CoExpressionAsyncMethodsTest.java similarity index 98% rename from service/src/test/java/org/cbioportal/service/util/CoExpressionAsyncMethodsTest.java rename to src/test/java/org/cbioportal/service/util/CoExpressionAsyncMethodsTest.java index 0ba9b0be032..28fb4c43c13 100644 --- a/service/src/test/java/org/cbioportal/service/util/CoExpressionAsyncMethodsTest.java +++ b/src/test/java/org/cbioportal/service/util/CoExpressionAsyncMethodsTest.java @@ -1,7 +1,6 @@ package org.cbioportal.service.util; import org.cbioportal.model.CoExpression; -import org.cbioportal.service.util.CoExpressionAsyncMethods; import org.junit.Assert; import org.junit.Test; import org.junit.runner.RunWith; diff --git a/service/src/test/java/org/cbioportal/service/util/JwtUtilsTest.java b/src/test/java/org/cbioportal/service/util/JwtUtilsTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/util/JwtUtilsTest.java rename to src/test/java/org/cbioportal/service/util/JwtUtilsTest.java diff --git a/service/src/test/java/org/cbioportal/service/util/JwtUtilsTestConfiguration.java b/src/test/java/org/cbioportal/service/util/JwtUtilsTestConfiguration.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/util/JwtUtilsTestConfiguration.java rename to src/test/java/org/cbioportal/service/util/JwtUtilsTestConfiguration.java diff --git a/service/src/test/java/org/cbioportal/service/util/MolecularProfileUtilTest.java b/src/test/java/org/cbioportal/service/util/MolecularProfileUtilTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/util/MolecularProfileUtilTest.java rename to src/test/java/org/cbioportal/service/util/MolecularProfileUtilTest.java diff --git a/service/src/test/java/org/cbioportal/service/util/ProfiledCasesCounterTest.java b/src/test/java/org/cbioportal/service/util/ProfiledCasesCounterTest.java similarity index 100% rename from service/src/test/java/org/cbioportal/service/util/ProfiledCasesCounterTest.java rename to src/test/java/org/cbioportal/service/util/ProfiledCasesCounterTest.java diff --git a/src/test/java/org/cbioportal/test/integration/MysqlInitializer.java b/src/test/java/org/cbioportal/test/integration/MysqlInitializer.java new file mode 100644 index 00000000000..716df444763 --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/MysqlInitializer.java @@ -0,0 +1,19 @@ +package org.cbioportal.test.integration; + +import org.springframework.boot.test.util.TestPropertyValues; +import org.springframework.context.ApplicationContextInitializer; +import org.springframework.context.ConfigurableApplicationContext; + +public abstract class MysqlInitializer implements + ApplicationContextInitializer { + + public void initializeImpl(ConfigurableApplicationContext configurableApplicationContext, + SharedMysqlContainer mysqlContainer) { + TestPropertyValues values = TestPropertyValues.of( + String.format("spring.datasource.url=%s", mysqlContainer.getJdbcUrl()), + String.format("spring.datasource.username=%s", mysqlContainer.getUsername()), + String.format("spring.datasource.password=%s", mysqlContainer.getPassword()) + ); + values.applyTo(configurableApplicationContext); + } +} diff --git a/src/test/java/org/cbioportal/test/integration/OAuth2KeycloakInitializer.java b/src/test/java/org/cbioportal/test/integration/OAuth2KeycloakInitializer.java new file mode 100644 index 00000000000..600f0327756 --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/OAuth2KeycloakInitializer.java @@ -0,0 +1,64 @@ +package org.cbioportal.test.integration; + +import dasniko.testcontainers.keycloak.KeycloakContainer; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.boot.test.util.TestPropertyValues; +import org.springframework.context.ApplicationContextInitializer; +import org.springframework.context.ConfigurableApplicationContext; + +public abstract class OAuth2KeycloakInitializer implements + ApplicationContextInitializer { + + private static final Logger log = LoggerFactory.getLogger(OAuth2KeycloakInitializer.class); + + public void initializeImpl(ConfigurableApplicationContext configurableApplicationContext, + KeycloakContainer keycloakContainer) { + + try { + + String keycloakUrlForCBioportal = keycloakContainer.getAuthServerUrl(); + String keycloakUrlForBrowser = "http://keycloak:8080/auth"; + + TestPropertyValues values = TestPropertyValues.of( + + // These urls are from the perspective of cBioPortal application (port on host system). + String.format( + "spring.security.oauth2.client.provider.cbio-idp.issuer=%s/realms/cbio", + keycloakUrlForCBioportal), + String.format( + "spring.security.oauth2.client.provider.cbio-idp.token-uri=%s/realms/cbio/protocol/openid-connect/token", + keycloakUrlForCBioportal), + String.format( + "spring.security.oauth2.client.provider.cbio-idp.user-info-uri=%s/realms/cbio/protocol/openid-connect/userinfo", + keycloakUrlForCBioportal), + String.format( + "spring.security.oauth2.client.provider.cbio-idp.jwk-set-uri=%s/realms/cbio/protocol/openid-connect/certs", + keycloakUrlForCBioportal), + String.format( + "dat.oauth2.accessTokenUri=%s/realms/cbio/protocol/openid-connect/token", + keycloakUrlForCBioportal), + String.format("dat.oauth2.jwkUrl=%s/realms/cbio/protocol/openid-connect/certs", + keycloakUrlForCBioportal), + + // This url is from the perspective of the browser. + String.format( + "spring.security.oauth2.client.provider.cbio-idp.authorization-uri=%s/realms/cbio/protocol/openid-connect/auth", + keycloakUrlForBrowser), + String.format( + "spring.security.oauth2.client.provider.cbio-idp.logout-uri=%s/realms/cbio/protocol/openid-connect/logout", + keycloakUrlForBrowser), + String.format( + "dat.oauth2.userAuthorizationUri=%s/realms/cbio/protocol/openid-connect/auth", + keycloakUrlForBrowser), + String.format("dat.oauth2.issuer=%s/realms/cbio", keycloakUrlForBrowser) + + ); + values.applyTo(configurableApplicationContext); + + } catch (Exception e) { + log.error("Error initializing keycloak container" + e.getMessage()); + } + } + +} diff --git a/src/test/java/org/cbioportal/test/integration/SamlKeycloakInitializer.java b/src/test/java/org/cbioportal/test/integration/SamlKeycloakInitializer.java new file mode 100644 index 00000000000..fe813a548a3 --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/SamlKeycloakInitializer.java @@ -0,0 +1,56 @@ +package org.cbioportal.test.integration; + +import dasniko.testcontainers.keycloak.KeycloakContainer; +import java.io.BufferedWriter; +import java.io.File; +import java.io.FileWriter; +import java.io.IOException; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.boot.test.util.TestPropertyValues; +import org.springframework.context.ApplicationContextInitializer; +import org.springframework.context.ConfigurableApplicationContext; + +public abstract class SamlKeycloakInitializer implements + ApplicationContextInitializer { + + private static final Logger log = LoggerFactory.getLogger(SamlKeycloakInitializer.class); + + public void initializeImpl(ConfigurableApplicationContext configurableApplicationContext, + KeycloakContainer keycloakContainer) { + + try { + + String keycloakUrlForCBioportal = keycloakContainer.getAuthServerUrl(); + String keycloakUrlForBrowser = "http://keycloak:8080/auth"; + + TestPropertyValues values = TestPropertyValues.of( + // Should match the id in the generated idp metadata xml (samlIdpMetadata) + String.format("spring.security.saml2.relyingparty.registration.cbio-idp.identityprovider.entity-id=%s/realms/cbio", + keycloakUrlForBrowser), + + // These urls are from the perspective of cBioPortal application (port on host system) + String.format( + "spring.security.saml2.relyingparty.registration.cbio-idp.identityprovider.metadata-uri=%s/realms/cbio/protocol/saml/descriptor", + keycloakUrlForCBioportal), + String.format( + "dat.oauth2.accessTokenUri=%s/realms/cbio/protocol/openid-connect/token", + keycloakUrlForCBioportal), + String.format("dat.oauth2.jwkUrl=%s/realms/cbio/protocol/openid-connect/certs", + keycloakUrlForCBioportal), + + // This url is from the perspective of the browser + String.format( + "dat.oauth2.userAuthorizationUri=%s/realms/cbio/protocol/openid-connect/auth", + keycloakUrlForBrowser), + String.format("dat.oauth2.issuer=%s/realms/cbio", keycloakUrlForBrowser) + + ); + values.applyTo(configurableApplicationContext); + + } catch (Exception e) { + log.error("Error initializing keycloak container" + e.getMessage()); + } + } + +} diff --git a/src/test/java/org/cbioportal/test/integration/SharedChromeContainer.java b/src/test/java/org/cbioportal/test/integration/SharedChromeContainer.java new file mode 100644 index 00000000000..3e57f5e01bf --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/SharedChromeContainer.java @@ -0,0 +1,47 @@ +package org.cbioportal.test.integration; + +import static org.testcontainers.containers.BrowserWebDriverContainer.VncRecordingMode.RECORD_ALL; + + +import java.io.File; +import java.util.HashMap; +import java.util.Map; +import org.openqa.selenium.chrome.ChromeOptions; +import org.testcontainers.containers.BrowserWebDriverContainer; + +public class SharedChromeContainer extends BrowserWebDriverContainer { + + public final static String DOWNLOAD_FOLDER = "/tmp/browser_downloads"; + + private static BrowserWebDriverContainer container; + + private SharedChromeContainer() { + super(); + } + + // For test development a VNC viewer can be connected to the selenium container. + // Make sure to connect to exposed port on host system connected to internal + // port 5900 of the browser container. The password is 'secret'. + + public static BrowserWebDriverContainer getInstance() { + if (container == null) { + + ChromeOptions options = new ChromeOptions(); + Map prefs = new HashMap(); + prefs.put("download.default_directory", DOWNLOAD_FOLDER); + prefs.put("profile.default_content_settings.popups", 0); + prefs.put("download.prompt_for_download", "false"); + prefs.put("download.directory_upgrade", "true"); + options.setExperimentalOption("prefs", prefs); + + container = new BrowserWebDriverContainer<>() + // activate this to record movies of the tests (greate for debugging) + .withRecordingMode(RECORD_ALL, new File("/home/pnp300")) + .withNetwork(SharedKeycloakContainer.keycloakNetwork) + .withAccessToHost(true) + .withCapabilities(options); + } + return container; + } + +} diff --git a/src/test/java/org/cbioportal/test/integration/SharedKeycloakContainer.java b/src/test/java/org/cbioportal/test/integration/SharedKeycloakContainer.java new file mode 100644 index 00000000000..e69d81718c2 --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/SharedKeycloakContainer.java @@ -0,0 +1,34 @@ +package org.cbioportal.test.integration; + +import dasniko.testcontainers.keycloak.KeycloakContainer; +import org.testcontainers.containers.Network; + +public class SharedKeycloakContainer extends KeycloakContainer { + + private static final String IMAGE_VERSION = "jboss/keycloak:15.0.2"; + private static String kcAdminName = "admin"; + private static String kcAdminPassword = "admin"; + public static final Network keycloakNetwork = Network.newNetwork(); + private static KeycloakContainer container; + + private SharedKeycloakContainer() { + super(IMAGE_VERSION); + } + + public static KeycloakContainer getInstance() { + if (container == null) { + container = new KeycloakContainer() + .withRealmImportFile("security/keycloak-configuration-generated.json") + .withAdminUsername(kcAdminName) + .withAdminPassword(kcAdminPassword) + .withNetwork(keycloakNetwork) + .withNetworkAliases("keycloak") + // Needed because cBioPortal and Chrome use differnt urls to Keycloak container + // Causes mismatch of 'issuer' field in JWT. + // See: https://stackoverflow.com/a/65848717/11651683 + .withEnv("KEYCLOAK_FRONTEND_URL", "http://keycloak:8080/auth"); + } + return container; + } + +} diff --git a/src/test/java/org/cbioportal/test/integration/SharedMysqlContainer.java b/src/test/java/org/cbioportal/test/integration/SharedMysqlContainer.java new file mode 100644 index 00000000000..78ad92024bd --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/SharedMysqlContainer.java @@ -0,0 +1,36 @@ +package org.cbioportal.test.integration; + +import java.io.File; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.time.Duration; +import org.testcontainers.containers.BindMode; +import org.testcontainers.containers.MySQLContainer; + +public class SharedMysqlContainer extends MySQLContainer { + + private static final String IMAGE_VERSION = "mysql:5.7"; + private static SharedMysqlContainer container; + + private SharedMysqlContainer() { + super(IMAGE_VERSION); + } + + public static SharedMysqlContainer getInstance() { + if (container == null) { + container = new SharedMysqlContainer() + .withClasspathResourceMapping("cgds.sql", "/docker-entrypoint-initdb.d/a_schema.sql", BindMode.READ_ONLY) + .withClasspathResourceMapping("seed_mini.sql", "/docker-entrypoint-initdb.d/b_seed.sql", BindMode.READ_ONLY) + .withStartupTimeout(Duration.ofMinutes(10)); + } + return container; + } + + /** + * @param path path to file or directory from the root of the maven project + * @return Absolute path to file + */ + private static Path absolutePath(String path) { + return Paths.get(new File("../" + path).getAbsolutePath()); + } +} diff --git a/src/test/java/org/cbioportal/test/integration/security/OAuth2AuthIntegrationTest.java b/src/test/java/org/cbioportal/test/integration/security/OAuth2AuthIntegrationTest.java new file mode 100644 index 00000000000..1fd90a7ebbc --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/security/OAuth2AuthIntegrationTest.java @@ -0,0 +1,203 @@ +package org.cbioportal.test.integration.security; + +import static org.cbioportal.test.integration.security.OAuth2AuthIntegrationTest.*; +import static org.testcontainers.shaded.org.awaitility.Awaitility.await; + + +import dasniko.testcontainers.keycloak.KeycloakContainer; +import java.io.IOException; +import java.time.Duration; +import java.util.concurrent.Callable; +import javax.annotation.Nonnull; +import org.cbioportal.PortalApplication; +import org.cbioportal.test.integration.MysqlInitializer; +import org.cbioportal.test.integration.OAuth2KeycloakInitializer; +import org.cbioportal.test.integration.SharedChromeContainer; +import org.cbioportal.test.integration.SharedKeycloakContainer; +import org.cbioportal.test.integration.SharedMysqlContainer; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; +import org.junit.jupiter.api.Assertions; +import org.junit.runner.RunWith; +import org.openqa.selenium.By; +import org.openqa.selenium.NoSuchElementException; +import org.openqa.selenium.WebElement; +import org.openqa.selenium.remote.RemoteWebDriver; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.boot.web.context.WebServerInitializedEvent; +import org.springframework.context.ApplicationContext; +import org.springframework.context.ApplicationContextInitializer; +import org.springframework.context.ApplicationListener; +import org.springframework.context.ConfigurableApplicationContext; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.TestPropertySource; +import org.springframework.test.context.junit4.SpringRunner; +import org.springframework.util.Assert; +import org.testcontainers.Testcontainers; +import org.testcontainers.containers.BrowserWebDriverContainer; +import org.testcontainers.containers.Container; +import org.testcontainers.containers.GenericContainer; + +@RunWith(SpringRunner.class) +@SpringBootTest( + webEnvironment = SpringBootTest.WebEnvironment.DEFINED_PORT, + classes = {PortalApplication.class} +) +@TestPropertySource( + properties = { + "app.name=cbioportal", + "server.port=8080", + "filter_groups_by_appname=false", + "authenticate=oauth2", + "dat.method=oauth2", + // DB settings (also see MysqlInitializer) + "spring.datasource.driverClassName=com.mysql.jdbc.Driver", + "spring.jpa.database-platform=org.hibernate.dialect.MySQL5Dialect", + // OAuth2 settings + "spring.security.oauth2.client.registration.cbio-idp.redirect-uri=http://host.testcontainers.internal:8080/login/oauth2/code/cbio-idp", + "spring.security.oauth2.client.provider.cbio-idp.user-name-attribute=email", + "spring.security.oauth2.client.registration.cbio-idp.client-name=cbioportal_oauth2", + "spring.security.oauth2.client.registration.cbio-idp.client-id=cbioportal_oauth2", + "spring.security.oauth2.client.registration.cbio-idp.client-secret=client_secret", + "spring.security.oauth2.client.registration.cbio-idp.authorization-grant-type=authorization_code", + "spring.security.oauth2.client.registration.cbio-idp.client-authentication-method=client_secret_post", + "spring.security.oauth2.client.registration.cbio-idp.scope=openid,email,roles", + "spring.security.oauth2.client.user-info-roles-path=resource_access::cbioportal::roles", + // Keycloak host settings (also see KeycloakInitializer) + "dat.oauth2.clientId=cbioportal_oauth2", + "dat.oauth2.clientSecret=client_secret", + // Redirect URL to cBiopPortal application from perspective of browser + "dat.oauth2.redirectUri=http://host.testcontainers.internal:8080/api/data-access-token/oauth2", + "dat.oauth2.jwtRolesPath=resource_access::cbioportal::roles" + } +) +@ContextConfiguration(initializers = { + MyMysqlInitializer.class, + MyKeycloakInitializer.class, + PortInitializer.class +}) +@Ignore +public class OAuth2AuthIntegrationTest { + + private final static int CBIO_PORT = 8080; + public final static String CBIO_URL_FROM_BROWSER = + String.format("http://host.testcontainers.internal:%d", CBIO_PORT); + + @Autowired + private ApplicationContext context; + + @ClassRule + public static SharedMysqlContainer mysqlContainer = SharedMysqlContainer.getInstance(); + + @ClassRule + public static KeycloakContainer keycloakContainer = SharedKeycloakContainer.getInstance(); + + @ClassRule + public static BrowserWebDriverContainer chrome = SharedChromeContainer.getInstance(); + + // Update application properties with connection info on Keycloak container + public static class MyKeycloakInitializer extends OAuth2KeycloakInitializer { + @Override + public void initialize( + ConfigurableApplicationContext configurableApplicationContext) { + super.initializeImpl(configurableApplicationContext, keycloakContainer); + } + } + + // Update application properties with connection info on Mysql container + public static class MyMysqlInitializer extends MysqlInitializer { + @Override + public void initialize( + ConfigurableApplicationContext configurableApplicationContext) { + super.initializeImpl(configurableApplicationContext, mysqlContainer); + } + } + + // Expose the ports for the cBioPortal Spring application and keycloak inside + // the Chrome container. Each address is available on http://host.testcontainers.internal: + // in the browser container. + public static class PortInitializer implements + ApplicationContextInitializer { + @Override + public void initialize(ConfigurableApplicationContext applicationContext) { + applicationContext.addApplicationListener( + (ApplicationListener) event -> { + Testcontainers.exposeHostPorts(CBIO_PORT, keycloakContainer.getHttpPort()); + }); + } + } + + @Test + public void loginSuccess() { + RemoteWebDriver driver = performLogin(); + WebElement loggedInButton = driver.findElement(By.id("dat-dropdown")); + Assertions.assertEquals("Logged in as testuser@thehyve.nl", loggedInButton.getText()); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.xpath("//span[.='Breast Invasive Carcinoma (TCGA,Nature 2012)']")), + "Study could not be found on the landing page. Permissions are not correctly passed from IDP to client."); + } + + @Test + public void downloadOfflineToken() throws Exception { + RemoteWebDriver driver = performLogin(); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.id("dat-dropdown")).click(), + "Logged-in menu could not be found on the page."); + driver.findElement(By.linkText("Data Access Token")).click(); + driver.findElement(By.xpath("//button[text()='Download Token']")).click(); + + await().atMost(Duration.ofSeconds(2)).until(downloadedFile()); + + Assertions.assertTrue(downloadedFile().call()); + } + + @Test + public void logoutSuccess() { + RemoteWebDriver driver = performLogin(); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.id("dat-dropdown")).click(), + "Logout menu could not be found on the page."); + driver.findElement(By.linkText("Sign out")).click(); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.id("username")), + "IDP login screen not visible on the page. Logout did not work correctly." + ); + } + + private RemoteWebDriver performLogin() { + RemoteWebDriver driver = chrome.getWebDriver(); + driver.get(CBIO_URL_FROM_BROWSER); + try { + // when the cbioportal logo is visible, skip login + driver.findElement(By.id("cbioportal-logo")); + } catch (NoSuchElementException e) { + WebElement userNameInput = driver.findElement(By.id("username")); + WebElement passwordInput = driver.findElement(By.id("password")); + WebElement loginButton = driver.findElement(By.id("kc-login")); + userNameInput.sendKeys("testuser"); + passwordInput.sendKeys("P@ssword1"); + loginButton.click(); + } + return driver; + } + + private boolean containerFileExists( + @Nonnull final GenericContainer container, @Nonnull String path) + throws IOException, InterruptedException { + Assert.notNull(container, "Containers is null"); + Assert.isTrue(!path.isEmpty(), "Path string is empty"); + Container.ExecResult r = container.execInContainer("/bin/sh", "-c", + "if [ -f " + path + + " ] ; then echo '0' ; else (>&2 echo '1') ; fi"); + return !r.getStderr().contains("1"); + } + + private Callable downloadedFile() { + return () -> containerFileExists(chrome, + String.format("%s/cbioportal_data_access_token.txt", + SharedChromeContainer.DOWNLOAD_FOLDER)); + } + +} \ No newline at end of file diff --git a/src/test/java/org/cbioportal/test/integration/security/Oauth2ResourceServerIntegrationTest.java b/src/test/java/org/cbioportal/test/integration/security/Oauth2ResourceServerIntegrationTest.java new file mode 100644 index 00000000000..acd4c36d97c --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/security/Oauth2ResourceServerIntegrationTest.java @@ -0,0 +1,181 @@ +/* + * Copyright (c) 2019 The Hyve B.V. + * This code is licensed under the GNU Affero General Public License (AGPL), + * version 3, or (at your option) any later version. + */ + +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.cbioportal.test.integration.security; + + +import static org.cbioportal.test.integration.security.Oauth2ResourceServerIntegrationTest.*; +import static org.cbioportal.test.integration.security.util.TokenHelper.encodeWithoutSigning; +import static org.junit.Assert.assertEquals; + + +import java.io.IOException; +import java.net.URLEncoder; +import org.cbioportal.PortalApplication; +import org.cbioportal.test.integration.MysqlInitializer; +import org.cbioportal.test.integration.SharedMysqlContainer; +import org.cbioportal.test.integration.security.util.HttpHelper; +import org.json.JSONArray; +import org.json.JSONException; +import org.junit.*; +import org.junit.jupiter.api.Assertions; +import org.junit.runner.RunWith; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.context.ConfigurableApplicationContext; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.TestPropertySource; +import org.springframework.test.context.junit4.SpringRunner; + + +/** + * Tests protection of API endpoints by SAML auth + */ +// This starts a live portal instance on a random port (imported via @LocalServerPort) +@RunWith(SpringRunner.class) +@SpringBootTest( + webEnvironment = SpringBootTest.WebEnvironment.DEFINED_PORT, + classes = {PortalApplication.class} +) +@TestPropertySource( + properties = { + "app.name=cbioportal", + "server.port=8080", + "filter_groups_by_appname=true", + "authenticate=saml", + "dat.method=oauth2", + // DB settings + "spring.datasource.driverClassName=com.mysql.jdbc.Driver", + "spring.jpa.database-platform=org.hibernate.dialect.MySQL5Dialect", + // SAML settings + "saml.keystore.location=classpath:/security/samlKeystore.jks", + "saml.keystore.password=P@ssword1", + "saml.keystore.private-key.key=secure-key", + "saml.keystore.private-key.password=P@ssword1", + "saml.keystore.default-key=secure-key", + "saml.idp.metadata.location=classpath:/security/saml-idp-metadata.xml", + // I had to use specificBinding because of this bug https://github.com/spring-projects/spring-security-saml/issues/460 + "saml.idp.comm.binding.settings=specificBinding", + "saml.idp.comm.binding.type=bindings:HTTP-Redirect", + "saml.sp.metadata.entitybaseurl=#{null}", + "saml.sp.metadata.entityid=cbioportal", + "saml.idp.metadata.entityid=spring.security.saml.idp.id", + "saml.idp.metadata.attribute.email=User.email", + "saml.custom.userservice.class=org.cbioportal.security.spring.authentication.saml.SAMLUserDetailsServiceImpl", + "saml.logout.local=false", + // FIXME Our test saml idp does not sign assertions for some reason + "saml.sp.metadata.wantassertionsigned=false", + "dat.oauth2.clientId=client_id", + "dat.oauth2.clientSecret=client_secret", + "dat.oauth2.issuer=token_issuer", + "dat.oauth2.accessTokenUri=http://localhost:8443/auth/realms/cbio/token", + "dat.oauth2.redirectUri=http://localhost:8080/api/data-access-token/oauth2", + "dat.oauth2.userAuthorizationUri=http://localhost:8443/auth/realms/cbio/auth", + "dat.oauth2.jwkUrl=http://localhost:8443/auth/realms/cbio/jwkUrl", + "dat.oauth2.jwtRolesPath=resource_access::cbioportal::roles" + } +) +@ContextConfiguration(initializers = { + MyMysqlInitializer.class, +}) +@Ignore +public class Oauth2ResourceServerIntegrationTest { + + private static String HOST = "http://localhost:8080"; + private static final int IDP_PORT = 8443; + + @ClassRule + public static SharedMysqlContainer mysqlContainer = SharedMysqlContainer.getInstance(); + + // Update application properties with connection info on Mysql container + public static class MyMysqlInitializer extends MysqlInitializer { + @Override + public void initialize( + ConfigurableApplicationContext configurableApplicationContext) { + super.initializeImpl(configurableApplicationContext, mysqlContainer); + } + } + + @Test + public void testAccessForbiddenForAnonymousUser() throws IOException { + HttpHelper.HttpResponse response = HttpHelper.sendGetRequest(HOST + "/api/studies", null, null); + assertEquals(401, response.code); + } + + @Test + public void testAccessForbiddenForFakeBearerToken() throws IOException { + String offlineToken = "{\"sub\": \"0000000000\"}"; + String encodedOfflineToken = encodeWithoutSigning(offlineToken); +// new MockServerClient("localhost", IDP_PORT).when( +// HttpRequest.request() +// .withMethod("POST") +// .withPath("/auth/realms/cbio/token") +// .withBody(StringBody.subString("refresh_token=" + URLEncoder.encode(encodedOfflineToken, "UTF-8")))) +// .respond(HttpResponse.response().withStatusCode(401)); + + HttpHelper.HttpResponse response = HttpHelper.sendGetRequest(HOST + "/api/studies", encodedOfflineToken, null); + + assertEquals(401, response.code); + } + + @Test + public void testAccessForValidBearerToken() throws IOException, JSONException { + String offlineTokenClaims = "{\"sub\": \"1234567890\"}"; + String encodedOfflineToken = encodeWithoutSigning(offlineTokenClaims); + String accessTokenClaims = "{" + + "\"sub\": \"1234567890\"," + + "\"name\": \"John Doe\"," + + "\"resource_access\": {\"cbioportal\": {\"roles\": [\"cbioportal:study_tcga_pub\"]}}" + + "}"; +// new MockServerClient("localhost", IDP_PORT).when( +// HttpRequest.request() +// .withMethod("POST") +// .withPath("/auth/realms/cbio/token") +// .withBody(StringBody.subString("refresh_token=" + URLEncoder.encode(encodedOfflineToken, "UTF-8")))) +// .respond( +// HttpResponse.response() +// .withBody("{\"access_token\": \"" +// + encodeWithoutSigning(accessTokenClaims) +// + "\"}")); + + HttpHelper.HttpResponse response = HttpHelper.sendGetRequest(HOST + "/api/studies", encodedOfflineToken, null); + + assertEquals(200, response.code); + Assertions.assertTrue(response.body != null && !response.body.isEmpty()); + JSONArray studies = new JSONArray(response.body); + Assertions.assertEquals(1, studies.length()); + studies.getJSONObject(0).getString("studyId"); + Assertions.assertEquals("study_tcga_pub", studies.getJSONObject(0).getString("studyId")); + } + + //private static ClientAndServer mockServer; + + //@BeforeClass + //public static void startServer() { + // mockServer = ClientAndServer.startClientAndServer(IDP_PORT); + //} + + //@AfterClass + //public static void stopServer() { + // mockServer.stop(); + //} +} diff --git a/src/test/java/org/cbioportal/test/integration/security/SamlAuthIntegrationTest.java b/src/test/java/org/cbioportal/test/integration/security/SamlAuthIntegrationTest.java new file mode 100644 index 00000000000..abbf256d725 --- /dev/null +++ b/src/test/java/org/cbioportal/test/integration/security/SamlAuthIntegrationTest.java @@ -0,0 +1,196 @@ +package org.cbioportal.test.integration.security; + +import static org.cbioportal.test.integration.security.SamlAuthIntegrationTest.MySamlKeycloakInitializer; +import static org.cbioportal.test.integration.security.SamlAuthIntegrationTest.MyMysqlInitializer; +import static org.cbioportal.test.integration.security.SamlAuthIntegrationTest.PortInitializer; +import static org.testcontainers.shaded.org.awaitility.Awaitility.await; + + +import dasniko.testcontainers.keycloak.KeycloakContainer; +import java.io.IOException; +import java.time.Duration; +import java.util.concurrent.Callable; +import javax.annotation.Nonnull; +import org.cbioportal.PortalApplication; +import org.cbioportal.test.integration.SamlKeycloakInitializer; +import org.cbioportal.test.integration.MysqlInitializer; +import org.cbioportal.test.integration.SharedChromeContainer; +import org.cbioportal.test.integration.SharedKeycloakContainer; +import org.cbioportal.test.integration.SharedMysqlContainer; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; +import org.junit.jupiter.api.Assertions; +import org.junit.runner.RunWith; +import org.openqa.selenium.By; +import org.openqa.selenium.NoSuchElementException; +import org.openqa.selenium.WebElement; +import org.openqa.selenium.remote.RemoteWebDriver; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.boot.web.context.WebServerInitializedEvent; +import org.springframework.context.ApplicationContextInitializer; +import org.springframework.context.ApplicationListener; +import org.springframework.context.ConfigurableApplicationContext; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.TestPropertySource; +import org.springframework.test.context.junit4.SpringRunner; +import org.springframework.util.Assert; +import org.testcontainers.Testcontainers; +import org.testcontainers.containers.BrowserWebDriverContainer; +import org.testcontainers.containers.Container; +import org.testcontainers.containers.GenericContainer; + +@RunWith(SpringRunner.class) +@SpringBootTest( + webEnvironment = SpringBootTest.WebEnvironment.DEFINED_PORT, + classes = {PortalApplication.class} +) +@TestPropertySource( + properties = { + "app.name=cbioportal", + "server.port=8080", + "filter_groups_by_appname=false", + "authenticate=saml", + "dat.method=oauth2", + // DB settings (also see MysqlInitializer) + "spring.datasource.driverClassName=com.mysql.jdbc.Driver", + "spring.jpa.database-platform=org.hibernate.dialect.MySQL5Dialect", + // SAML settings + "spring.security.saml2.relyingparty.registration.cbio-idp.entity-id=cbioportal", + "spring.security.saml2.relyingparty.registration.cbio-idp.signing.credentials[0].certificate-location=classpath:/security/signing-cert.pem", + "spring.security.saml2.relyingparty.registration.cbio-idp.signing.credentials[0].private-key-location=classpath:/security/signing-key.pem", + "saml.idp.metadata.attribute.email=email", + "saml.idp.metadata.attribute.role=Role", + // Keycloak host settings (also see KeycloakInitializer) + "dat.oauth2.clientId=cbioportal_oauth2", + "dat.oauth2.clientSecret=client_secret", + // Redirect URL to cBiopPortal application from perspective of browser + "dat.oauth2.redirectUri=http://host.testcontainers.internal:8080/api/data-access-token/oauth2", + "dat.oauth2.jwtRolesPath=resource_access::cbioportal::roles" + } +) +@ContextConfiguration(initializers = { + MyMysqlInitializer.class, + MySamlKeycloakInitializer.class, + PortInitializer.class +}) +@Ignore +public class SamlAuthIntegrationTest { + + private final static int CBIO_PORT = 8080; + public final static String CBIO_URL_FROM_BROWSER = + String.format("http://host.testcontainers.internal:%d", CBIO_PORT); + + @ClassRule + public static SharedMysqlContainer mysqlContainer = SharedMysqlContainer.getInstance(); + + @ClassRule + public static KeycloakContainer keycloakContainer = SharedKeycloakContainer.getInstance(); + + @ClassRule + public static BrowserWebDriverContainer chrome = SharedChromeContainer.getInstance(); + + // Update application properties with connection info on Keycloak container + public static class MySamlKeycloakInitializer extends SamlKeycloakInitializer { + @Override + public void initialize( + ConfigurableApplicationContext configurableApplicationContext) { + super.initializeImpl(configurableApplicationContext, keycloakContainer); + } + } + + // Update application properties with connection info on Mysql container + public static class MyMysqlInitializer extends MysqlInitializer { + @Override + public void initialize( + ConfigurableApplicationContext configurableApplicationContext) { + super.initializeImpl(configurableApplicationContext, mysqlContainer); + } + } + + // Expose the ports for the cBioPortal Spring application and keycloak inside + // the Chrome container. Each address is available on http://host.testcontainers.internal: + // in the browser container. + public static class PortInitializer implements + ApplicationContextInitializer { + @Override + public void initialize(ConfigurableApplicationContext applicationContext) { + applicationContext.addApplicationListener( + (ApplicationListener) event -> { + Testcontainers.exposeHostPorts(CBIO_PORT, keycloakContainer.getHttpPort()); + }); + } + } + + @Test + public void loginSuccess() { + RemoteWebDriver driver = performLogin(); + WebElement loggedInButton = driver.findElement(By.id("dat-dropdown")); + Assertions.assertEquals("Logged in as testuser@thehyve.nl", loggedInButton.getText()); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.xpath("//span[.='Breast Invasive Carcinoma (TCGA,Nature 2012)']")), + "Study could not be found on the landing page. Permissions are not correctly passed from IDP to client."); + } + + @Test + public void downloadOfflineToken() throws Exception { + RemoteWebDriver driver = performLogin(); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.id("dat-dropdown")).click(), + "Logged-in menu could not be found on the page."); + driver.findElement(By.linkText("Data Access Token")).click(); + driver.findElement(By.xpath("//button[text()='Download Token']")).click(); + + await().atMost(Duration.ofSeconds(5)).until(downloadedFile()); + + Assertions.assertTrue(downloadedFile().call()); + } + + @Test + public void logoutSuccess() { + RemoteWebDriver driver = performLogin(); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.id("dat-dropdown")).click(), + "Logout menu could not be found on the page."); + driver.findElement(By.linkText("Sign out")).click(); + Assertions.assertDoesNotThrow( + () -> driver.findElement(By.id("username")), + "IDP login screen not visible on the page. Logout did not work correctly." + ); + } + + private RemoteWebDriver performLogin() { + RemoteWebDriver driver = chrome.getWebDriver(); + driver.get(CBIO_URL_FROM_BROWSER); + try { + // when the cbioportal logo is visible, skip login + driver.findElement(By.id("cbioportal-logo")); + } catch (NoSuchElementException e) { + WebElement userNameInput = driver.findElement(By.id("username")); + WebElement passwordInput = driver.findElement(By.id("password")); + WebElement loginButton = driver.findElement(By.id("kc-login")); + userNameInput.sendKeys("testuser"); + passwordInput.sendKeys("P@ssword1"); + loginButton.click(); + } + return driver; + } + + private boolean containerFileExists( + @Nonnull final GenericContainer container, @Nonnull String path) + throws IOException, InterruptedException { + Assert.notNull(container, "Containers is null"); + Assert.isTrue(!path.isEmpty(), "Path string is empty"); + Container.ExecResult r = container.execInContainer("/bin/sh", "-c", + "if [ -f " + path + + " ] ; then echo '0' ; else (>&2 echo '1') ; fi"); + return !r.getStderr().contains("1"); + } + + private Callable downloadedFile() { + return () -> containerFileExists(chrome, + String.format("%s/cbioportal_data_access_token.txt", + SharedChromeContainer.DOWNLOAD_FOLDER)); + } + +} \ No newline at end of file diff --git a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/HttpHelper.java b/src/test/java/org/cbioportal/test/integration/security/util/HttpHelper.java similarity index 85% rename from portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/HttpHelper.java rename to src/test/java/org/cbioportal/test/integration/security/util/HttpHelper.java index 8a2543f45b0..8358a28bae9 100644 --- a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/HttpHelper.java +++ b/src/test/java/org/cbioportal/test/integration/security/util/HttpHelper.java @@ -21,7 +21,7 @@ * along with this program. If not, see . */ -package org.mskcc.cbio.portal; +package org.cbioportal.test.integration.security.util; import java.io.*; import java.net.HttpURLConnection; @@ -29,12 +29,12 @@ import java.util.List; import java.util.Map; -class HttpHelper { +public class HttpHelper { - static class HttpResponse { - final String body; - final int code; - final Map> headers; + public static class HttpResponse { + public final String body; + public final int code; + public final Map> headers; private HttpResponse(int code, String body, Map> headers) { this.code = code; @@ -43,7 +43,7 @@ private HttpResponse(int code, String body, Map> headers) { } } - static HttpResponse sendGetRequest(String url, String bearerToken, String cookie) throws IOException { + public static HttpResponse sendGetRequest(String url, String bearerToken, String cookie) throws IOException { HttpURLConnection.setFollowRedirects(false); HttpURLConnection connection = (HttpURLConnection) new URL(url).openConnection(); if (bearerToken != null) { @@ -58,12 +58,14 @@ static HttpResponse sendGetRequest(String url, String bearerToken, String cookie Map> headers = connection.getHeaderFields(); InputStream inputStream = getInputStream(connection); - String bodyContent = readString(inputStream); + + String bodyContent = inputStream != null ? readString(inputStream) : null; return new HttpResponse(responseCode, bodyContent, headers); } - static HttpResponse sendPostRequest(String url, String bearerToken, String cookie, String body) throws IOException { + public static HttpResponse sendPostRequest(String url, String bearerToken, String cookie, + String body) throws IOException { HttpURLConnection.setFollowRedirects(false); HttpURLConnection connection = (HttpURLConnection) new URL(url).openConnection(); if (bearerToken != null) { diff --git a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/TokenHelper.java b/src/test/java/org/cbioportal/test/integration/security/util/TokenHelper.java similarity index 91% rename from portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/TokenHelper.java rename to src/test/java/org/cbioportal/test/integration/security/util/TokenHelper.java index c74e779e821..a30661b4862 100644 --- a/portal/src/integration-tests/saml-oauth2-setup/src/test/java/org/mskcc/cbio/portal/TokenHelper.java +++ b/src/test/java/org/cbioportal/test/integration/security/util/TokenHelper.java @@ -21,7 +21,7 @@ * along with this program. If not, see . */ -package org.mskcc.cbio.portal; +package org.cbioportal.test.integration.security.util; import java.nio.charset.Charset; import java.nio.charset.StandardCharsets; @@ -29,7 +29,7 @@ public class TokenHelper { - static String encodeWithoutSigning(String claims) { + public static String encodeWithoutSigning(String claims) { Base64.Encoder urlEncoder = Base64.getUrlEncoder(); Charset charset = StandardCharsets.UTF_8; diff --git a/utils/src/test/java/org/cbioportal/utils/config/PropertyConditionTest.java b/src/test/java/org/cbioportal/utils/config/PropertyConditionTest.java similarity index 98% rename from utils/src/test/java/org/cbioportal/utils/config/PropertyConditionTest.java rename to src/test/java/org/cbioportal/utils/config/PropertyConditionTest.java index 9b6657f9307..79dd1ba5e48 100644 --- a/utils/src/test/java/org/cbioportal/utils/config/PropertyConditionTest.java +++ b/src/test/java/org/cbioportal/utils/config/PropertyConditionTest.java @@ -29,7 +29,7 @@ public class PropertyConditionTest { @Before public void init() { - attributes = new HashMap(); + attributes = new HashMap(); attributes.put("name", "requested_prop"); attributes.put("havingValue", "requested_value"); attributes.put("matchIfMissing", false); diff --git a/web/src/test/java/org/cbioportal/web/AlterationDriverAnnotationControllerTest.java b/src/test/java/org/cbioportal/web/AlterationDriverAnnotationControllerTest.java similarity index 75% rename from web/src/test/java/org/cbioportal/web/AlterationDriverAnnotationControllerTest.java rename to src/test/java/org/cbioportal/web/AlterationDriverAnnotationControllerTest.java index 16b879e21e7..cfa208c397f 100644 --- a/web/src/test/java/org/cbioportal/web/AlterationDriverAnnotationControllerTest.java +++ b/src/test/java/org/cbioportal/web/AlterationDriverAnnotationControllerTest.java @@ -1,59 +1,55 @@ package org.cbioportal.web; +import static org.mockito.ArgumentMatchers.anyList; +import static org.mockito.Mockito.when; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.HashSet; +import java.util.List; import org.cbioportal.model.CustomDriverAnnotationReport; import org.cbioportal.service.AlterationDriverAnnotationService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.*; - -import static org.mockito.ArgumentMatchers.anyList; -import static org.mockito.Mockito.when; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest(AlterationDriverAnnotationController.class) +@ContextConfiguration(classes={AlterationDriverAnnotationController.class, TestConfig.class}) public class AlterationDriverAnnotationControllerTest { private ObjectMapper objectMapper = new ObjectMapper(); - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private AlterationDriverAnnotationService alterationDriverAnnotationService; + @Autowired private MockMvc mockMvc; - @Bean - public AlterationDriverAnnotationService alterationDriverAnnotationService() { - return Mockito.mock(AlterationDriverAnnotationService.class); - } - @Before - public void setUp() throws Exception { + public void setUp() { Mockito.reset(alterationDriverAnnotationService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); } @Test + @WithMockUser public void fetchCustomDriverAnnotationReport() throws Exception { CustomDriverAnnotationReport report = new CustomDriverAnnotationReport(true, new HashSet<>(Arrays.asList("a", "b"))); when(alterationDriverAnnotationService.getCustomDriverAnnotationProps( @@ -62,7 +58,7 @@ public void fetchCustomDriverAnnotationReport() throws Exception { List body = new ArrayList<>(Collections.singletonList("molecularProfileId1")); mockMvc.perform(MockMvcRequestBuilders.post( - "/custom-driver-annotation-report/fetch") + "/api/custom-driver-annotation-report/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(body))) diff --git a/web/src/test/java/org/cbioportal/web/AlterationEnrichmentControllerTest.java b/src/test/java/org/cbioportal/web/AlterationEnrichmentControllerTest.java similarity index 95% rename from web/src/test/java/org/cbioportal/web/AlterationEnrichmentControllerTest.java rename to src/test/java/org/cbioportal/web/AlterationEnrichmentControllerTest.java index 04d56ecf7ad..54ab0b76405 100644 --- a/web/src/test/java/org/cbioportal/web/AlterationEnrichmentControllerTest.java +++ b/src/test/java/org/cbioportal/web/AlterationEnrichmentControllerTest.java @@ -8,6 +8,7 @@ import org.cbioportal.model.MolecularProfileCaseIdentifier; import org.cbioportal.model.MutationEventType; import org.cbioportal.service.AlterationEnrichmentService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.MolecularProfileCasesGroupAndAlterationTypeFilter; import org.cbioportal.web.parameter.MolecularProfileCasesGroupFilter; import org.cbioportal.web.util.AlterationFilterMockitoArgumentMatcher; @@ -18,18 +19,15 @@ import org.mockito.ArgumentMatcher; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.TestPropertySource; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; import java.math.BigDecimal; import java.util.ArrayList; @@ -41,11 +39,11 @@ import static org.mockito.ArgumentMatchers.any; import static org.mockito.ArgumentMatchers.argThat; import static org.mockito.Mockito.when; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest(AlterationEnrichmentControllerTest.class) +@ContextConfiguration(classes={AlterationEnrichmentController.class, TestConfig.class}) public class AlterationEnrichmentControllerTest { private static final int TEST_ENTREZ_GENE_ID_1 = 1; @@ -63,24 +61,17 @@ public class AlterationEnrichmentControllerTest { private static final int TEST_NUMBER_OF_SAMPLES_PROFILED_IN_SET_1 = 1; private static final int TEST_NUMBER_OF_SAMPLES_PROFILED_IN_SET_2 = 1; - @Autowired - private WebApplicationContext wac; + @MockBean + private AlterationEnrichmentService alterationEnrichmentService; @Autowired - private AlterationEnrichmentService alterationEnrichmentService; + private MockMvc mockMvc; private ObjectMapper objectMapper = new ObjectMapper(); - - private MockMvc mockMvc; private ArrayList alterationEnrichments; Map mutationTypes; Map cnaTypes; - @Bean - public AlterationEnrichmentService alterationEnrichmentService() { - return Mockito.mock(AlterationEnrichmentService.class); - } - private MolecularProfileCasesGroupAndAlterationTypeFilter filter; private static class caseIdMatcher implements ArgumentMatcher { @@ -149,14 +140,12 @@ public void setUp() throws Exception { filter.setAlterationEventTypes(new AlterationFilter()); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - mutationTypes = new HashMap<>(); cnaTypes = new HashMap<>(); - } @Test + @WithMockUser public void fetchAlterationEnrichmentsAllTypes() throws Exception { when(alterationEnrichmentService.getAlterationEnrichments( @@ -173,7 +162,7 @@ public void fetchAlterationEnrichmentsAllTypes() throws Exception { filter.getAlterationEventTypes().setCopyNumberAlterationEventTypes(cnaTypes); mockMvc.perform(MockMvcRequestBuilders.post( - "/alteration-enrichments/fetch") + "/api/alteration-enrichments/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(filter))) @@ -199,6 +188,7 @@ public void fetchAlterationEnrichmentsAllTypes() throws Exception { } @Test + @WithMockUser public void fetchAlterationEnrichmentsNoTypes() throws Exception { when(alterationEnrichmentService.getAlterationEnrichments( @@ -215,7 +205,7 @@ public void fetchAlterationEnrichmentsNoTypes() throws Exception { filter.getAlterationEventTypes().setCopyNumberAlterationEventTypes(cnaTypes); mockMvc.perform(MockMvcRequestBuilders.post( - "/alteration-enrichments/fetch") + "/api/alteration-enrichments/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(filter))) @@ -241,6 +231,7 @@ public void fetchAlterationEnrichmentsNoTypes() throws Exception { } @Test + @WithMockUser public void fetchAlterationEnrichmentsAllMutationTypesDeselected() throws Exception { when(alterationEnrichmentService.getAlterationEnrichments( @@ -258,7 +249,7 @@ public void fetchAlterationEnrichmentsAllMutationTypesDeselected() throws Except filter.getAlterationEventTypes().setCopyNumberAlterationEventTypes(cnaTypes); mockMvc.perform(MockMvcRequestBuilders.post( - "/alteration-enrichments/fetch") + "/api/alteration-enrichments/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(filter))) @@ -284,6 +275,7 @@ public void fetchAlterationEnrichmentsAllMutationTypesDeselected() throws Except } @Test + @WithMockUser public void fetchAlterationEnrichmentsAllCnaTypesDeselected() throws Exception { when(alterationEnrichmentService.getAlterationEnrichments( @@ -301,7 +293,7 @@ public void fetchAlterationEnrichmentsAllCnaTypesDeselected() throws Exception { filter.getAlterationEventTypes().setCopyNumberAlterationEventTypes(cnaTypes); mockMvc.perform(MockMvcRequestBuilders.post( - "/alteration-enrichments/fetch") + "/api/alteration-enrichments/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(filter))) @@ -311,6 +303,7 @@ public void fetchAlterationEnrichmentsAllCnaTypesDeselected() throws Exception { } @Test + @WithMockUser public void fetchAlterationEnrichmentsSubsetTypes() throws Exception { when(alterationEnrichmentService.getAlterationEnrichments( @@ -327,7 +320,7 @@ public void fetchAlterationEnrichmentsSubsetTypes() throws Exception { filter.getAlterationEventTypes().setCopyNumberAlterationEventTypes(cnaTypes); mockMvc.perform(MockMvcRequestBuilders.post( - "/alteration-enrichments/fetch") + "/api/alteration-enrichments/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(filter))) diff --git a/src/test/java/org/cbioportal/web/CacheControllerTest.java b/src/test/java/org/cbioportal/web/CacheControllerTest.java new file mode 100644 index 00000000000..cf40aee1d37 --- /dev/null +++ b/src/test/java/org/cbioportal/web/CacheControllerTest.java @@ -0,0 +1,101 @@ +package org.cbioportal.web; + +import static org.mockito.ArgumentMatchers.anyBoolean; +import static org.mockito.ArgumentMatchers.anyString; +import static org.mockito.ArgumentMatchers.eq; +import static org.mockito.Mockito.doThrow; +import static org.mockito.Mockito.never; +import static org.mockito.Mockito.times; +import static org.mockito.Mockito.verify; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import org.cbioportal.service.CacheService; +import org.cbioportal.service.exception.CacheOperationException; +import org.junit.Ignore; +import org.cbioportal.web.config.TestConfig; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.TestPropertySource; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.util.ReflectionTestUtils; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest(CacheController.class) +@ContextConfiguration(classes = {CacheController.class, TestConfig.class}) +@TestPropertySource( + properties = { + "cache.endpoint.enabled=true", + "cache.endpoint.api-key=correct-key" + } +) +public class CacheControllerTest { + + @Autowired + private MockMvc mockMvc; + + @MockBean + private CacheService cacheService; + + @Autowired + private CacheController cacheController; + + @Test + @WithMockUser + public void clearAllCachesNoKeyProvided() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.delete("/api/cache").with(csrf())) + .andExpect(MockMvcResultMatchers.status().isBadRequest()); + verify(cacheService, never()).clearCaches(true); + } + + @Test + @WithMockUser + public void clearAllCachesUnauthorized() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.delete("/api/cache").with(csrf()) + .header("X-API-KEY", "incorrect-key")) + .andExpect(MockMvcResultMatchers.status().isUnauthorized()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); + verify(cacheService, never()).clearCaches(true); + } + + @Test + @WithMockUser + public void clearAllCachesSuccess() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.delete("/api/cache").with(csrf()) + .header("X-API-KEY", "correct-key")) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); + verify(cacheService, times(1)).clearCaches(true); + } + + @Test + @WithMockUser + public void clearAllCachesDisabled() throws Exception { + ReflectionTestUtils.setField(cacheController, "cacheEndpointEnabled", false); + mockMvc.perform(MockMvcRequestBuilders.delete("/api/cache").with(csrf()) + .header("X-API-KEY", "correct-key")) + .andExpect(MockMvcResultMatchers.status().isNotFound()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); + verify(cacheService, never()).clearCaches(true); + ReflectionTestUtils.setField(cacheController, "cacheEndpointEnabled", true); + } + + @Test + @WithMockUser + public void clearAllCachesSkipSpringManaged() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.delete("/api/cache").param("springManagedCache", "false").with(csrf()) + .header("X-API-KEY", "correct-key")) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); + verify(cacheService, times(1)).clearCaches(false); + } +} diff --git a/src/test/java/org/cbioportal/web/CacheStatsControllerTest.java b/src/test/java/org/cbioportal/web/CacheStatsControllerTest.java new file mode 100644 index 00000000000..904b76f8d03 --- /dev/null +++ b/src/test/java/org/cbioportal/web/CacheStatsControllerTest.java @@ -0,0 +1,102 @@ +package org.cbioportal.web; + +import org.cbioportal.service.CacheStatisticsService; +import org.cbioportal.service.exception.CacheNotFoundException; +import org.cbioportal.web.config.TestConfig; +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mockito; +import org.mockito.invocation.InvocationOnMock; +import org.mockito.stubbing.Answer; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.TestPropertySource; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +import java.util.ArrayList; +import java.util.List; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {CacheStatsController.class, TestConfig.class}) +@TestPropertySource( + properties = "persistence.cache_type=redis" +) +public class CacheStatsControllerTest { + + public static final String VALID_CACHE_ALIAS = "GeneralRepositoryCache"; + public static final String INVALID_CACHE_ALIAS = "InvalidCacheForTesting"; + + @Autowired + private MockMvc mockMvc; + + @MockBean + public CacheStatisticsService cacheStatisticsService; + + @Before + public void setUp() throws Exception { + Mockito.when(cacheStatisticsService.getKeyCountsPerClass(Mockito.anyString())).thenAnswer(new Answer>() { + public List answer(InvocationOnMock invocation) throws CacheNotFoundException { + Object[] args = invocation.getArguments(); + String cacheAlias = (String)args[0]; + if (VALID_CACHE_ALIAS.equals(cacheAlias)) { + return new ArrayList(); + } + throw new CacheNotFoundException(cacheAlias); + } + }); + Mockito.when(cacheStatisticsService.getKeysInCache(Mockito.anyString())).thenAnswer(new Answer>() { + public List answer(InvocationOnMock invocation) throws CacheNotFoundException { + Object[] args = invocation.getArguments(); + String cacheAlias = (String)args[0]; + if (VALID_CACHE_ALIAS.equals(cacheAlias)) { + return new ArrayList(); + } + throw new CacheNotFoundException(cacheAlias); + } + }); + } + + @Test + @WithMockUser + public void testGetKeysInCache() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.get("/api/" + VALID_CACHE_ALIAS + "/keysInCache") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)); + } + + @Test + @WithMockUser + public void testGetKeysInInvalidCache() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.get("/api/" + INVALID_CACHE_ALIAS + "/keysInCache") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isNotFound()); + } + + @Test + @WithMockUser + public void testGetKeyCountsPerClass() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.get("/api/" + VALID_CACHE_ALIAS + "/keyCountsPerClass") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)); + } + + @Test + @WithMockUser + public void testGetKeyCountsPerClassInvalidCache() throws Exception { + mockMvc.perform(MockMvcRequestBuilders.get("/api/" + INVALID_CACHE_ALIAS + "/keyCountsPerClass") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isNotFound()); + } + +} diff --git a/web/src/test/java/org/cbioportal/web/CancerTypeControllerTest.java b/src/test/java/org/cbioportal/web/CancerTypeControllerTest.java similarity index 85% rename from web/src/test/java/org/cbioportal/web/CancerTypeControllerTest.java rename to src/test/java/org/cbioportal/web/CancerTypeControllerTest.java index 3accfce4a3d..fb53ae94c76 100644 --- a/web/src/test/java/org/cbioportal/web/CancerTypeControllerTest.java +++ b/src/test/java/org/cbioportal/web/CancerTypeControllerTest.java @@ -1,35 +1,31 @@ package org.cbioportal.web; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.TypeOfCancer; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.CancerTypeService; import org.cbioportal.service.exception.CancerTypeNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {CancerTypeController.class, TestConfig.class}) public class CancerTypeControllerTest { private static final String TEST_TYPE_OF_CANCER_ID_1 = "test_type_of_cancer_id_1"; @@ -44,26 +40,13 @@ public class CancerTypeControllerTest { private static final String TEST_PARENT_2 = "test_parent_2"; @Autowired - private WebApplicationContext wac; - - @Autowired - private CancerTypeService cancerTypeService; - private MockMvc mockMvc; - @Bean - public CancerTypeService cancerTypeService() { - return Mockito.mock(CancerTypeService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(cancerTypeService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } + @MockBean + public CancerTypeService cancerTypeService; @Test + @WithMockUser public void getAllCancerTypesDefaultProjection() throws Exception { List typeOfCancerList = new ArrayList<>(); @@ -85,7 +68,7 @@ public void getAllCancerTypesDefaultProjection() throws Exception { Mockito.when(cancerTypeService.getAllCancerTypes(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(typeOfCancerList); - mockMvc.perform(MockMvcRequestBuilders.get("/cancer-types") + mockMvc.perform(MockMvcRequestBuilders.get("/api/cancer-types") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -103,6 +86,7 @@ public void getAllCancerTypesDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllCancerTypesMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -110,25 +94,27 @@ public void getAllCancerTypesMetaProjection() throws Exception { Mockito.when(cancerTypeService.getMetaCancerTypes()).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/cancer-types") + mockMvc.perform(MockMvcRequestBuilders.get("/api/cancer-types") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getCancerTypeNotFound() throws Exception { Mockito.when(cancerTypeService.getCancerType(Mockito.anyString())) .thenThrow(new CancerTypeNotFoundException("cancer_type_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/cancer-types/cancer_type_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/cancer-types/cancer_type_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message").value("Cancer type not found: cancer_type_id")); } @Test + @WithMockUser public void getCancerType() throws Exception { TypeOfCancer typeOfCancer = new TypeOfCancer(); @@ -140,7 +126,7 @@ public void getCancerType() throws Exception { Mockito.when(cancerTypeService.getCancerType(Mockito.anyString())).thenReturn(typeOfCancer); - mockMvc.perform(MockMvcRequestBuilders.get("/cancer-types/cancer_type_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/cancer-types/cancer_type_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) diff --git a/src/test/java/org/cbioportal/web/ClinicalAttributeControllerTest.java b/src/test/java/org/cbioportal/web/ClinicalAttributeControllerTest.java new file mode 100644 index 00000000000..8433b5018fa --- /dev/null +++ b/src/test/java/org/cbioportal/web/ClinicalAttributeControllerTest.java @@ -0,0 +1,273 @@ +package org.cbioportal.web; + +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; +import org.cbioportal.model.ClinicalAttribute; +import org.cbioportal.model.ClinicalAttributeCount; +import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.service.ClinicalAttributeService; +import org.cbioportal.service.exception.ClinicalAttributeNotFoundException; +import org.cbioportal.web.config.TestConfig; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.ClinicalAttributeCountFilter; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.hamcrest.Matchers; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mockito; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; +import java.util.ArrayList; +import java.util.List; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {ClinicalAttributeController.class, TestConfig.class}) +public class ClinicalAttributeControllerTest { + + private static final String TEST_ATTR_ID_1 = "test_attr_id_1"; + private static final int TEST_CANCER_STUDY_ID_1 = 1; + private static final String TEST_CANCER_STUDY_IDENTIFIER_1 = "test_study_1"; + private static final String TEST_SAMPLE_ID_1 = "test_sample_id_1"; + private static final String TEST_DATATYPE_1 = "test_datatype_1"; + private static final String TEST_DESCRIPTION_1 = "test_description_1"; + private static final String TEST_DISPLAY_NAME_1 = "test_display_name_1"; + private static final boolean TEST_PATIENT_ATTRIBUTE_1 = true; + private static final String TEST_PRIORITY_1 = "test_priority_1"; + private static final Integer TEST_ATTRIBUTE_COUNT_1 = 3; + private static final String TEST_ATTR_ID_2 = "test_attr_id_2"; + private static final int TEST_CANCER_STUDY_ID_2 = 2; + private static final String TEST_CANCER_STUDY_IDENTIFIER_2 = "test_study_2"; + private static final String TEST_SAMPLE_ID_2 = "test_sample_id_2"; + private static final String TEST_DATATYPE_2 = "test_datatype_2"; + private static final String TEST_DESCRIPTION_2 = "test_description_2"; + private static final String TEST_DISPLAY_NAME_2 = "test_display_name_2"; + private static final boolean TEST_PATIENT_ATTRIBUTE_2 = false; + private static final String TEST_PRIORITY_2 = "test_priority_2"; + private static final Integer TEST_ATTRIBUTE_COUNT_2 = 1; + + @MockBean + private ClinicalAttributeService clinicalAttributeService; + + private ObjectMapper objectMapper = new ObjectMapper(); + + @Autowired + private MockMvc mockMvc; + + @Test + @WithMockUser + public void getAllClinicalAttributesDefaultProjection() throws Exception { + + List clinicalAttributes = createExampleClinicalAttributes(); + + Mockito.when(clinicalAttributeService.getAllClinicalAttributes(Mockito.any(), Mockito.any(), + Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(clinicalAttributes); + + mockMvc.perform(MockMvcRequestBuilders.get("/api/clinical-attributes") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].cancerStudyId").doesNotExist()) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].datatype").value(TEST_DATATYPE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].displayName").value(TEST_DISPLAY_NAME_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].description").value(TEST_DESCRIPTION_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].priority").value(TEST_PRIORITY_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].cancerStudyId").doesNotExist()) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].datatype").value(TEST_DATATYPE_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].displayName").value(TEST_DISPLAY_NAME_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].description").value(TEST_DESCRIPTION_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].priority").value(TEST_PRIORITY_2)); + } + + @Test + @WithMockUser + public void getAllClinicalAttributesMetaProjection() throws Exception { + + BaseMeta baseMeta = new BaseMeta(); + baseMeta.setTotalCount(2); + + Mockito.when(clinicalAttributeService.getMetaClinicalAttributes()).thenReturn(baseMeta); + + mockMvc.perform(MockMvcRequestBuilders.get("/api/clinical-attributes") + .param("projection", "META")) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); + } + + @Test + @WithMockUser + public void getAllClinicalAttributesInStudyDefaultProjection() throws Exception { + + List clinicalAttributes = createExampleClinicalAttributes(); + + Mockito.when(clinicalAttributeService.getAllClinicalAttributesInStudy(Mockito.any(), Mockito.any(), + Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) + .thenReturn(clinicalAttributes); + + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/clinical-attributes") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].cancerStudyId").doesNotExist()) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].datatype").value(TEST_DATATYPE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].displayName").value(TEST_DISPLAY_NAME_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].description").value(TEST_DESCRIPTION_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].priority").value(TEST_PRIORITY_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].cancerStudyId").doesNotExist()) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].datatype").value(TEST_DATATYPE_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].displayName").value(TEST_DISPLAY_NAME_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].description").value(TEST_DESCRIPTION_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].priority").value(TEST_PRIORITY_2)); + } + + @Test + @WithMockUser + public void getAllClinicalAttributesInStudyMetaProjection() throws Exception { + + BaseMeta baseMeta = new BaseMeta(); + baseMeta.setTotalCount(2); + + Mockito.when(clinicalAttributeService.getMetaClinicalAttributesInStudy(Mockito.anyString())) + .thenReturn(baseMeta); + + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/clinical-attributes") + .param("projection", "META")) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); + } + + @Test + @WithMockUser + public void getClinicalAttributeInStudyNotFound() throws Exception { + + Mockito.when(clinicalAttributeService.getClinicalAttribute(Mockito.anyString(), Mockito.anyString())).thenThrow( + new ClinicalAttributeNotFoundException("test_study_id", "test_clinical_attribute_id")); + + mockMvc.perform(MockMvcRequestBuilders + .get("/api/studies/test_study_id/clinical-attributes/test_clinical_attribute_id") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isNotFound()) + .andExpect(MockMvcResultMatchers.jsonPath("$.message") + .value("Clinical attribute not found in study test_study_id: test_clinical_attribute_id")); + } + + @Test + @WithMockUser + public void getClinicalAttributeInStudy() throws Exception { + + ClinicalAttribute clinicalAttribute = new ClinicalAttribute(); + clinicalAttribute.setAttrId(TEST_ATTR_ID_1); + clinicalAttribute.setCancerStudyId(TEST_CANCER_STUDY_ID_1); + clinicalAttribute.setCancerStudyIdentifier(TEST_CANCER_STUDY_IDENTIFIER_1); + clinicalAttribute.setDatatype(TEST_DATATYPE_1); + clinicalAttribute.setDescription(TEST_DESCRIPTION_1); + clinicalAttribute.setDisplayName(TEST_DISPLAY_NAME_1); + clinicalAttribute.setPatientAttribute(TEST_PATIENT_ATTRIBUTE_1); + clinicalAttribute.setPriority(TEST_PRIORITY_1); + + Mockito.when(clinicalAttributeService.getClinicalAttribute(Mockito.anyString(), Mockito.anyString())) + .thenReturn(clinicalAttribute); + + mockMvc.perform(MockMvcRequestBuilders + .get("/api/studies/test_study_id/clinical-attributes/test_clinical_attribute_id") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$.cancerStudyId").doesNotExist()) + .andExpect(MockMvcResultMatchers.jsonPath("$.clinicalAttributeId").value(TEST_ATTR_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$.studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$.datatype").value(TEST_DATATYPE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$.displayName").value(TEST_DISPLAY_NAME_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$.patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$.description").value(TEST_DESCRIPTION_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$.priority").value(TEST_PRIORITY_1)); + } + + @Test + @WithMockUser + public void fetchClinicalAttributes() throws Exception { + + List clinicalAttributes = createExampleClinicalAttributes(); + + Mockito.when(clinicalAttributeService.fetchClinicalAttributes(Mockito.anyList(), Mockito.anyString())) + .thenReturn(clinicalAttributes); + + List studyIds = new ArrayList<>(); + studyIds.add("study_id_1"); + studyIds.add("study_id_2"); + + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-attributes/fetch").with(csrf()) + .accept(MediaType.APPLICATION_JSON) + .contentType(MediaType.APPLICATION_JSON) + .content(objectMapper.writeValueAsString(studyIds))) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].cancerStudyId").doesNotExist()) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].datatype").value(TEST_DATATYPE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].displayName").value(TEST_DISPLAY_NAME_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].description").value(TEST_DESCRIPTION_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].priority").value(TEST_PRIORITY_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].cancerStudyId").doesNotExist()) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].datatype").value(TEST_DATATYPE_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].displayName").value(TEST_DISPLAY_NAME_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].description").value(TEST_DESCRIPTION_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].priority").value(TEST_PRIORITY_2)); + } + + private List createExampleClinicalAttributes() { + + List clinicalAttributeList = new ArrayList<>(); + ClinicalAttribute clinicalAttribute1 = new ClinicalAttribute(); + clinicalAttribute1.setAttrId(TEST_ATTR_ID_1); + clinicalAttribute1.setCancerStudyId(TEST_CANCER_STUDY_ID_1); + clinicalAttribute1.setCancerStudyIdentifier(TEST_CANCER_STUDY_IDENTIFIER_1); + clinicalAttribute1.setDatatype(TEST_DATATYPE_1); + clinicalAttribute1.setDescription(TEST_DESCRIPTION_1); + clinicalAttribute1.setDisplayName(TEST_DISPLAY_NAME_1); + clinicalAttribute1.setPatientAttribute(TEST_PATIENT_ATTRIBUTE_1); + clinicalAttribute1.setPriority(TEST_PRIORITY_1); + clinicalAttributeList.add(clinicalAttribute1); + ClinicalAttribute clinicalAttribute2 = new ClinicalAttribute(); + clinicalAttribute2.setAttrId(TEST_ATTR_ID_2); + clinicalAttribute2.setCancerStudyId(TEST_CANCER_STUDY_ID_2); + clinicalAttribute2.setCancerStudyIdentifier(TEST_CANCER_STUDY_IDENTIFIER_2); + clinicalAttribute2.setDatatype(TEST_DATATYPE_2); + clinicalAttribute2.setDescription(TEST_DESCRIPTION_2); + clinicalAttribute2.setDisplayName(TEST_DISPLAY_NAME_2); + clinicalAttribute2.setPatientAttribute(TEST_PATIENT_ATTRIBUTE_2); + clinicalAttribute2.setPriority(TEST_PRIORITY_2); + clinicalAttributeList.add(clinicalAttribute2); + return clinicalAttributeList; + } +} diff --git a/src/test/java/org/cbioportal/web/ClinicalAttributeCountControllerTest.java b/src/test/java/org/cbioportal/web/ClinicalAttributeCountControllerTest.java new file mode 100644 index 00000000000..e59b46f760e --- /dev/null +++ b/src/test/java/org/cbioportal/web/ClinicalAttributeCountControllerTest.java @@ -0,0 +1,129 @@ +package org.cbioportal.web; + +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; +import org.cbioportal.model.ClinicalAttribute; +import org.cbioportal.model.ClinicalAttributeCount; +import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.service.ClinicalAttributeService; +import org.cbioportal.service.exception.ClinicalAttributeNotFoundException; +import org.cbioportal.web.config.TestConfig; +import org.cbioportal.web.parameter.ClinicalAttributeCountFilter; +import org.cbioportal.web.parameter.HeaderKeyConstants; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.hamcrest.Matchers; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mockito; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {ClinicalAttributeCountController.class, TestConfig.class}) +public class ClinicalAttributeCountControllerTest { + + private static final String TEST_ATTR_ID_1 = "test_attr_id_1"; + private static final String TEST_CANCER_STUDY_IDENTIFIER_1 = "test_study_1"; + private static final String TEST_SAMPLE_ID_1 = "test_sample_id_1"; + private static final Integer TEST_ATTRIBUTE_COUNT_1 = 3; + private static final String TEST_ATTR_ID_2 = "test_attr_id_2"; + private static final String TEST_SAMPLE_ID_2 = "test_sample_id_2"; + private static final Integer TEST_ATTRIBUTE_COUNT_2 = 1; + + @MockBean + private ClinicalAttributeService clinicalAttributeService; + + private ObjectMapper objectMapper = new ObjectMapper(); + + @Autowired + private MockMvc mockMvc; + + @Test + @WithMockUser + public void getClinicalAttributeCountsBySampleIds() throws Exception { + + List clinicalAttributes = new ArrayList<>(); + ClinicalAttributeCount clinicalAttributeCount1 = new ClinicalAttributeCount(); + clinicalAttributeCount1.setAttrId(TEST_ATTR_ID_1); + clinicalAttributeCount1.setCount(TEST_ATTRIBUTE_COUNT_1); + clinicalAttributes.add(clinicalAttributeCount1); + ClinicalAttributeCount clinicalAttributeCount2 = new ClinicalAttributeCount(); + clinicalAttributeCount2.setAttrId(TEST_ATTR_ID_2); + clinicalAttributeCount2.setCount(TEST_ATTRIBUTE_COUNT_2); + clinicalAttributes.add(clinicalAttributeCount2); + + Mockito.when(clinicalAttributeService.getClinicalAttributeCountsBySampleIds(Mockito.any(), + Mockito.any())).thenReturn(clinicalAttributes); + + ClinicalAttributeCountFilter clinicalAttributeCountFilter = new ClinicalAttributeCountFilter(); + List sampleIdentifierList = new ArrayList<>(); + SampleIdentifier sampleIdentifier1 = new SampleIdentifier(); + sampleIdentifier1.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier1.setStudyId(TEST_CANCER_STUDY_IDENTIFIER_1); + sampleIdentifierList.add(sampleIdentifier1); + SampleIdentifier sampleIdentifier2 = new SampleIdentifier(); + sampleIdentifier2.setSampleId(TEST_SAMPLE_ID_2); + sampleIdentifier2.setStudyId(TEST_CANCER_STUDY_IDENTIFIER_1); + sampleIdentifierList.add(sampleIdentifier2); + clinicalAttributeCountFilter.setSampleIdentifiers(sampleIdentifierList); + + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-attributes/counts/fetch").with(csrf()) + .accept(MediaType.APPLICATION_JSON) + .contentType(MediaType.APPLICATION_JSON) + .content(objectMapper.writeValueAsString(clinicalAttributeCountFilter))) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].count").value(TEST_ATTRIBUTE_COUNT_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].count").value(TEST_ATTRIBUTE_COUNT_2)); + } + + @Test + @WithMockUser + public void getClinicalAttributeCountsBySampleListId() throws Exception { + + List clinicalAttributes = new ArrayList<>(); + ClinicalAttributeCount clinicalAttributeCount1 = new ClinicalAttributeCount(); + clinicalAttributeCount1.setAttrId(TEST_ATTR_ID_1); + clinicalAttributeCount1.setCount(TEST_ATTRIBUTE_COUNT_1); + clinicalAttributes.add(clinicalAttributeCount1); + ClinicalAttributeCount clinicalAttributeCount2 = new ClinicalAttributeCount(); + clinicalAttributeCount2.setAttrId(TEST_ATTR_ID_2); + clinicalAttributeCount2.setCount(TEST_ATTRIBUTE_COUNT_2); + clinicalAttributes.add(clinicalAttributeCount2); + + Mockito.when(clinicalAttributeService.getClinicalAttributeCountsBySampleListId(Mockito.anyString())).thenReturn(clinicalAttributes); + + ClinicalAttributeCountFilter clinicalAttributeCountFilter = new ClinicalAttributeCountFilter(); + clinicalAttributeCountFilter.setSampleListId("test_sample_list_id"); + + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-attributes/counts/fetch").with(csrf()) + .accept(MediaType.APPLICATION_JSON) + .contentType(MediaType.APPLICATION_JSON) + .content(objectMapper.writeValueAsString(clinicalAttributeCountFilter)) + .param("projection", "DETAILED")) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].count").value(TEST_ATTRIBUTE_COUNT_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].count").value(TEST_ATTRIBUTE_COUNT_2)); + } + +} diff --git a/web/src/test/java/org/cbioportal/web/ClinicalDataControllerTest.java b/src/test/java/org/cbioportal/web/ClinicalDataControllerTest.java similarity index 91% rename from web/src/test/java/org/cbioportal/web/ClinicalDataControllerTest.java rename to src/test/java/org/cbioportal/web/ClinicalDataControllerTest.java index 71efb782ab9..86d56d7accb 100644 --- a/web/src/test/java/org/cbioportal/web/ClinicalDataControllerTest.java +++ b/src/test/java/org/cbioportal/web/ClinicalDataControllerTest.java @@ -1,40 +1,39 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.ClinicalData; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.ClinicalDataService; import org.cbioportal.web.config.CustomObjectMapper; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.ClinicalDataIdentifier; import org.cbioportal.web.parameter.ClinicalDataMultiStudyFilter; import org.cbioportal.web.parameter.ClinicalDataSingleStudyFilter; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; import static org.mockito.Mockito.*; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {ClinicalDataController.class, TestConfig.class}) public class ClinicalDataControllerTest { private static final String TEST_ATTR_ID_1 = "test_attr_id_1"; @@ -44,28 +43,17 @@ public class ClinicalDataControllerTest { private static final String TEST_ATTR_VALUE_2 = "test_attr_value_2"; private static final int TEST_INTERNAL_ID_2 = 2; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private ClinicalDataService clinicalDataService; private ObjectMapper objectMapper = new CustomObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public ClinicalDataService clinicalDataService() { - return mock(ClinicalDataService.class); - } - - @Before - public void setUp() throws Exception { - reset(clinicalDataService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } @Test + @WithMockUser public void getAllClinicalDataOfSampleInStudyDefaultProjection() throws Exception { List sampleClinicalDataList = new ArrayList<>(); @@ -83,7 +71,7 @@ public void getAllClinicalDataOfSampleInStudyDefaultProjection() throws Exceptio any(), any(), any(), any(), any(), any())).thenReturn(sampleClinicalDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples/test_sample_id/clinical-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples/test_sample_id/clinical-data") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -101,6 +89,7 @@ public void getAllClinicalDataOfSampleInStudyDefaultProjection() throws Exceptio } @Test + @WithMockUser public void getAllClinicalDataOfSampleInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -109,13 +98,14 @@ public void getAllClinicalDataOfSampleInStudyMetaProjection() throws Exception { when(clinicalDataService.getMetaSampleClinicalData(any(), any(), any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples/test_sample_id/clinical-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples/test_sample_id/clinical-data") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getAllClinicalDataOfPatientInStudyDefaultProjection() throws Exception { List patientClinicalDataList = new ArrayList<>(); @@ -133,7 +123,7 @@ public void getAllClinicalDataOfPatientInStudyDefaultProjection() throws Excepti any(), any(), any(), any(), any(), any())).thenReturn(patientClinicalDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id/clinical-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id/clinical-data") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -151,6 +141,7 @@ public void getAllClinicalDataOfPatientInStudyDefaultProjection() throws Excepti } @Test + @WithMockUser public void getAllClinicalDataOfPatientInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -159,13 +150,14 @@ public void getAllClinicalDataOfPatientInStudyMetaProjection() throws Exception when(clinicalDataService.getMetaPatientClinicalData(any(), any(), any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id/clinical-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id/clinical-data") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getAllClinicalDataInStudyDefaultProjection() throws Exception { List patientClinicalDataList = new ArrayList<>(); @@ -183,7 +175,7 @@ public void getAllClinicalDataInStudyDefaultProjection() throws Exception { any(), any(), any(), any(), any(), any(), any(), any())).thenReturn(patientClinicalDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/clinical-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/clinical-data") .param("clinicalDataType", "PATIENT") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -202,6 +194,7 @@ public void getAllClinicalDataInStudyDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllClinicalDataInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -210,7 +203,7 @@ public void getAllClinicalDataInStudyMetaProjection() throws Exception { when(clinicalDataService.getMetaAllClinicalData(any(), any(), any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/clinical-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/clinical-data") .param("projection", "META") .param("clinicalDataType", "PATIENT")) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -219,6 +212,7 @@ public void getAllClinicalDataInStudyMetaProjection() throws Exception { @Test + @WithMockUser public void fetchClinicalDataInStudyDefaultProjection() throws Exception { List patientClinicalDataList = new ArrayList<>(); @@ -242,7 +236,7 @@ public void fetchClinicalDataInStudyDefaultProjection() throws Exception { ClinicalDataSingleStudyFilter clinicalDataSingleStudyFilter = new ClinicalDataSingleStudyFilter(); clinicalDataSingleStudyFilter.setIds(ids); - mockMvc.perform(MockMvcRequestBuilders.post("/studies/test_study_id/clinical-data/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/studies/test_study_id/clinical-data/fetch").with(csrf()) .param("clinicalDataType", "SAMPLE") .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) @@ -263,6 +257,7 @@ public void fetchClinicalDataInStudyDefaultProjection() throws Exception { } @Test + @WithMockUser public void fetchClinicalDataInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -278,7 +273,7 @@ public void fetchClinicalDataInStudyMetaProjection() throws Exception { ClinicalDataSingleStudyFilter clinicalDataSingleStudyFilter = new ClinicalDataSingleStudyFilter(); clinicalDataSingleStudyFilter.setIds(ids); - mockMvc.perform(MockMvcRequestBuilders.post("/studies/test_study_id/clinical-data/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/studies/test_study_id/clinical-data/fetch").with(csrf()) .param("projection", "META") .param("clinicalDataType", "SAMPLE") .contentType(MediaType.APPLICATION_JSON) @@ -288,6 +283,7 @@ public void fetchClinicalDataInStudyMetaProjection() throws Exception { } @Test + @WithMockUser public void fetchClinicalDataDefaultProjection() throws Exception { List patientClinicalDataList = new ArrayList<>(); @@ -316,7 +312,7 @@ public void fetchClinicalDataDefaultProjection() throws Exception { ClinicalDataMultiStudyFilter clinicalDataMultiStudyFilter = new ClinicalDataMultiStudyFilter(); clinicalDataMultiStudyFilter.setIdentifiers(clinicalDataIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-data/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-data/fetch").with(csrf()) .param("clinicalDataType", "PATIENT") .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) @@ -337,6 +333,7 @@ public void fetchClinicalDataDefaultProjection() throws Exception { } @Test + @WithMockUser public void fetchClinicalDataMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -357,7 +354,7 @@ public void fetchClinicalDataMetaProjection() throws Exception { ClinicalDataMultiStudyFilter clinicalDataMultiStudyFilter = new ClinicalDataMultiStudyFilter(); clinicalDataMultiStudyFilter.setIdentifiers(clinicalDataIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-data/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-data/fetch").with(csrf()) .param("projection", "META") .param("clinicalDataType", "PATIENT") .contentType(MediaType.APPLICATION_JSON) diff --git a/web/src/test/java/org/cbioportal/web/ClinicalDataEnrichmentControllerTest.java b/src/test/java/org/cbioportal/web/ClinicalDataEnrichmentControllerTest.java similarity index 86% rename from web/src/test/java/org/cbioportal/web/ClinicalDataEnrichmentControllerTest.java rename to src/test/java/org/cbioportal/web/ClinicalDataEnrichmentControllerTest.java index bb9c9333476..8e9ab0fa5ef 100644 --- a/web/src/test/java/org/cbioportal/web/ClinicalDataEnrichmentControllerTest.java +++ b/src/test/java/org/cbioportal/web/ClinicalDataEnrichmentControllerTest.java @@ -1,5 +1,8 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import java.math.BigDecimal; import java.util.ArrayList; import java.util.Arrays; @@ -10,35 +13,31 @@ import org.cbioportal.model.Sample; import org.cbioportal.service.ClinicalAttributeService; import org.cbioportal.service.SampleService; -import org.cbioportal.service.util.ClinicalAttributeUtil; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.Group; import org.cbioportal.web.parameter.GroupFilter; import org.cbioportal.web.parameter.SampleIdentifier; import org.cbioportal.web.util.ClinicalDataEnrichmentUtil; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; import com.fasterxml.jackson.databind.ObjectMapper; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {ClinicalDataEnrichmentController.class, TestConfig.class}) public class ClinicalDataEnrichmentControllerTest { public static final String STUDY_ID1 = "study_id1"; @@ -59,46 +58,22 @@ public class ClinicalDataEnrichmentControllerTest { public static final String CLINICAL_ATTRIBUTE_ID_3 = "attribute_id3"; public static final String CLINICAL_ATTRIBUTE_ID_4 = "attribute_id4"; - @Bean - public ClinicalAttributeUtil clinicalAttributeUtil() { - return new ClinicalAttributeUtil(); - } - - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private ClinicalDataEnrichmentUtil clinicalDataEnrichmentUtil; - @Autowired + @MockBean private ClinicalAttributeService clinicalAttributeService; - @Autowired + @MockBean private SampleService sampleService; + + @Autowired private MockMvc mockMvc; private ObjectMapper objectMapper = new ObjectMapper(); - @Bean - public SampleService sampleService() { - return Mockito.mock(SampleService.class); - } - - @Bean - public ClinicalDataEnrichmentUtil clinicalDataEnrichmentUtil() { - return Mockito.mock(ClinicalDataEnrichmentUtil.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(sampleService); - Mockito.reset(clinicalAttributeService); - Mockito.reset(clinicalDataEnrichmentUtil); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchClinicalDataCounts() throws Exception { SampleIdentifier sampleIdentifier1 = new SampleIdentifier(); @@ -167,7 +142,7 @@ public void fetchClinicalDataCounts() throws Exception { groupFilter.setGroups(groups); mockMvc.perform( - MockMvcRequestBuilders.post("/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON) + MockMvcRequestBuilders.post("/api/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON).with(csrf()) .contentType(MediaType.APPLICATION_JSON).content(objectMapper.writeValueAsString(groupFilter))) .andExpect(MockMvcResultMatchers.status().isBadRequest()).andExpect(MockMvcResultMatchers .jsonPath("$.message").value("interceptedGroupFilter size must be between 2 and 2147483647")); @@ -180,13 +155,13 @@ public void fetchClinicalDataCounts() throws Exception { // "groups[0].sampleIdentifiers size must be between 1 and 10000000" mockMvc.perform( - MockMvcRequestBuilders.post("/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON) + MockMvcRequestBuilders.post("/api/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON).with(csrf()) .contentType(MediaType.APPLICATION_JSON).content(objectMapper.writeValueAsString(groupFilter))) .andExpect(MockMvcResultMatchers.status().isBadRequest()); // "groups size must be between 2 and 2147483647" mockMvc.perform( - MockMvcRequestBuilders.post("/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON) + MockMvcRequestBuilders.post("/api/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON).with(csrf()) .contentType(MediaType.APPLICATION_JSON).content(objectMapper.writeValueAsString(groupFilter))) .andExpect(MockMvcResultMatchers.status().isBadRequest()); @@ -199,7 +174,7 @@ public void fetchClinicalDataCounts() throws Exception { group1.setSampleIdentifiers(Arrays.asList(sampleIdentifier1, sampleIdentifier2)); mockMvc.perform( - MockMvcRequestBuilders.post("/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON) + MockMvcRequestBuilders.post("/api/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON).with(csrf()) .contentType(MediaType.APPLICATION_JSON).content(objectMapper.writeValueAsString(groupFilter))) .andExpect(MockMvcResultMatchers.status().isBadRequest()) .andExpect(MockMvcResultMatchers.jsonPath("$.message") @@ -210,7 +185,7 @@ public void fetchClinicalDataCounts() throws Exception { // when all are invalid samples mockMvc.perform( - MockMvcRequestBuilders.post("/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON) + MockMvcRequestBuilders.post("/api/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON).with(csrf()) .contentType(MediaType.APPLICATION_JSON).content(objectMapper.writeValueAsString(groupFilter))) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(0))); @@ -254,7 +229,7 @@ public void fetchClinicalDataCounts() throws Exception { .thenReturn(Arrays.asList(clinicalDataEnrichment)); mockMvc.perform( - MockMvcRequestBuilders.post("/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON) + MockMvcRequestBuilders.post("/api/clinical-data-enrichments/fetch").accept(MediaType.APPLICATION_JSON).with(csrf()) .contentType(MediaType.APPLICATION_JSON).content(objectMapper.writeValueAsString(groupFilter))) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) diff --git a/web/src/test/java/org/cbioportal/web/ClinicalEventControllerTest.java b/src/test/java/org/cbioportal/web/ClinicalEventControllerTest.java similarity index 90% rename from web/src/test/java/org/cbioportal/web/ClinicalEventControllerTest.java rename to src/test/java/org/cbioportal/web/ClinicalEventControllerTest.java index 4a433c8fd69..acd87275ada 100644 --- a/web/src/test/java/org/cbioportal/web/ClinicalEventControllerTest.java +++ b/src/test/java/org/cbioportal/web/ClinicalEventControllerTest.java @@ -4,32 +4,29 @@ import org.cbioportal.model.ClinicalEventData; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.ClinicalEventService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; import java.util.ArrayList; import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {ClinicalEventController.class, TestConfig.class}) public class ClinicalEventControllerTest { private static final int TEST_CLINICAL_EVENT_ID_1 = 1; @@ -52,27 +49,14 @@ public class ClinicalEventControllerTest { private static final String TEST_KEY_4 = "test_key_4"; private static final String TEST_VALUE_4 = "test_value_4"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private ClinicalEventService clinicalEventService; + @Autowired private MockMvc mockMvc; - @Bean - public ClinicalEventService clinicalEventService() { - return Mockito.mock(ClinicalEventService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(clinicalEventService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllClinicalEventsOfPatientInStudy() throws Exception { List clinicalEventList = createExampleClinicalEventList(); @@ -81,7 +65,7 @@ public void getAllClinicalEventsOfPatientInStudy() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(clinicalEventList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id/clinical-events") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id/clinical-events") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -109,6 +93,7 @@ public void getAllClinicalEventsOfPatientInStudy() throws Exception { } @Test + @WithMockUser public void getAllClinicalEventsOfPatientInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -117,13 +102,14 @@ public void getAllClinicalEventsOfPatientInStudyMetaProjection() throws Exceptio Mockito.when(clinicalEventService.getMetaPatientClinicalEvents(Mockito.anyString(), Mockito.anyString())) .thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id/clinical-events") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id/clinical-events") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getAllClinicalEventsInStudy() throws Exception { List clinicalEventList = createExampleClinicalEventList(); @@ -132,7 +118,7 @@ public void getAllClinicalEventsInStudy() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(clinicalEventList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/clinical-events") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/clinical-events") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -160,6 +146,7 @@ public void getAllClinicalEventsInStudy() throws Exception { } @Test + @WithMockUser public void getAllClinicalEventsInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -168,7 +155,7 @@ public void getAllClinicalEventsInStudyMetaProjection() throws Exception { Mockito.when(clinicalEventService.getMetaClinicalEvents(Mockito.anyString())) .thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/clinical-events") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/clinical-events") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); diff --git a/web/src/test/java/org/cbioportal/web/CoExpressionControllerTest.java b/src/test/java/org/cbioportal/web/CoExpressionControllerTest.java similarity index 82% rename from web/src/test/java/org/cbioportal/web/CoExpressionControllerTest.java rename to src/test/java/org/cbioportal/web/CoExpressionControllerTest.java index 66a191ab3e9..ae97e59d1d6 100644 --- a/web/src/test/java/org/cbioportal/web/CoExpressionControllerTest.java +++ b/src/test/java/org/cbioportal/web/CoExpressionControllerTest.java @@ -1,37 +1,36 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.CoExpression; import org.cbioportal.model.EntityType; import org.cbioportal.service.CoExpressionService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.CoExpressionFilter; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {CoExpressionController.class, TestConfig.class}) public class CoExpressionControllerTest { private static final String TEST_ENTREZ_GENE_ID_1 = "1"; @@ -41,29 +40,16 @@ public class CoExpressionControllerTest { private static final BigDecimal TEST_SPEARMANS_CORRELATION_2 = new BigDecimal(4.1); private static final BigDecimal TEST_P_VALUE_2 = new BigDecimal(0.66); - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private CoExpressionService coExpressionService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public CoExpressionService coExpressionService() { - return Mockito.mock(CoExpressionService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(coExpressionService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchMolecularProfileCoExpressions() throws Exception { List coExpressionList = new ArrayList<>(); @@ -89,7 +75,7 @@ public void fetchMolecularProfileCoExpressions() throws Exception { coExpressionFilter.setEntrezGeneId(1); mockMvc.perform(MockMvcRequestBuilders.post( - "/molecular-profiles/co-expressions/fetch") + "/api/molecular-profiles/co-expressions/fetch").with(csrf()) .param("molecularProfileIdA", "test_molecular_profile_id") .param("molecularProfileIdB", "test_molecular_profile_id") .accept(MediaType.APPLICATION_JSON) diff --git a/web/src/test/java/org/cbioportal/web/CopyNumberSegmentControllerTest.java b/src/test/java/org/cbioportal/web/CopyNumberSegmentControllerTest.java similarity index 90% rename from web/src/test/java/org/cbioportal/web/CopyNumberSegmentControllerTest.java rename to src/test/java/org/cbioportal/web/CopyNumberSegmentControllerTest.java index 5664fe09cf8..88e10e11eaa 100644 --- a/web/src/test/java/org/cbioportal/web/CopyNumberSegmentControllerTest.java +++ b/src/test/java/org/cbioportal/web/CopyNumberSegmentControllerTest.java @@ -1,37 +1,37 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.CopyNumberSeg; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.CopyNumberSegmentService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.SampleIdentifier; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; import org.springframework.web.context.WebApplicationContext; -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.List; - @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {CopyNumberSegmentController.class, TestConfig.class}) public class CopyNumberSegmentControllerTest { private static final int TEST_SAMPLE_ID_1 = 1; @@ -55,30 +55,18 @@ public class CopyNumberSegmentControllerTest { private static final Integer TEST_NUM_PROBES_2 = 5; private static final BigDecimal TEST_SEGMENT_MEAN_2 = new BigDecimal(0.4); - - @Autowired private WebApplicationContext wac; - @Autowired + @MockBean private CopyNumberSegmentService copyNumberSegmentService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public CopyNumberSegmentService copyNumberSegmentService() { - return Mockito.mock(CopyNumberSegmentService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(copyNumberSegmentService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getCopyNumberSegmentsInSampleInStudyDefaultProjection() throws Exception { List copyNumberSegList = createExampleCopyNumberSegs(); @@ -87,7 +75,7 @@ public void getCopyNumberSegmentsInSampleInStudyDefaultProjection() throws Excep Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(copyNumberSegList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples/test_sample_id/copy-number-segments") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples/test_sample_id/copy-number-segments") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -111,6 +99,7 @@ public void getCopyNumberSegmentsInSampleInStudyDefaultProjection() throws Excep } @Test + @WithMockUser public void getCopyNumberSegmentsInSampleInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -119,13 +108,14 @@ public void getCopyNumberSegmentsInSampleInStudyMetaProjection() throws Exceptio Mockito.when(copyNumberSegmentService.getMetaCopyNumberSegmentsInSampleInStudy(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples/test_sample_id/copy-number-segments") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples/test_sample_id/copy-number-segments") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void fetchCopyNumberSegmentsDefaultProjection() throws Exception { List copyNumberSegList = createExampleCopyNumberSegs(); @@ -143,7 +133,7 @@ public void fetchCopyNumberSegmentsDefaultProjection() throws Exception { sampleIdentifier2.setSampleId(TEST_SAMPLE_STABLE_ID_2); sampleIdentifiers.add(sampleIdentifier2); - mockMvc.perform(MockMvcRequestBuilders.post("/copy-number-segments/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/copy-number-segments/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(sampleIdentifiers))) @@ -169,6 +159,7 @@ public void fetchCopyNumberSegmentsDefaultProjection() throws Exception { } @Test + @WithMockUser public void fetchCopyNumberSegmentsMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -187,7 +178,7 @@ public void fetchCopyNumberSegmentsMetaProjection() throws Exception { sampleIdentifier2.setSampleId(TEST_SAMPLE_STABLE_ID_2); sampleIdentifiers.add(sampleIdentifier2); - mockMvc.perform(MockMvcRequestBuilders.post("/copy-number-segments/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/copy-number-segments/fetch").with(csrf()) .param("projection", "META") .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(sampleIdentifiers))) diff --git a/web/src/test/java/org/cbioportal/web/CosmicCountControllerTest.java b/src/test/java/org/cbioportal/web/CosmicCountControllerTest.java similarity index 82% rename from web/src/test/java/org/cbioportal/web/CosmicCountControllerTest.java rename to src/test/java/org/cbioportal/web/CosmicCountControllerTest.java index 643147cc164..e1cd3cb52e3 100644 --- a/web/src/test/java/org/cbioportal/web/CosmicCountControllerTest.java +++ b/src/test/java/org/cbioportal/web/CosmicCountControllerTest.java @@ -1,33 +1,32 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.CosmicMutation; import org.cbioportal.service.CosmicCountService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {CosmicCountController.class, TestConfig.class}) public class CosmicCountControllerTest { private static final String TEST_COSMIC_MUTATION_ID_1 = "test_cosmic_mutation_id_1"; @@ -38,29 +37,17 @@ public class CosmicCountControllerTest { private static final String TEST_PROTEIN_CHANGE_2 = "test_protein_change_2"; private static final String TEST_KEYWORD_2 = "test_keyword_2"; private static final int TEST_COUNT_2 = 2; - @Autowired - private WebApplicationContext wac; - @Autowired + @MockBean private CosmicCountService cosmicCountService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public CosmicCountService cosmicCountService() { - return Mockito.mock(CosmicCountService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(cosmicCountService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchCosmicCounts() throws Exception { List cosmicMutationList = new ArrayList<>(); @@ -84,7 +71,7 @@ public void fetchCosmicCounts() throws Exception { keywords.add(TEST_KEYWORD_1); keywords.add(TEST_KEYWORD_2); - mockMvc.perform(MockMvcRequestBuilders.post("/cosmic-counts/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/cosmic-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(keywords))) diff --git a/web/src/test/java/org/cbioportal/web/DataAccessTokenControllerTest.java b/src/test/java/org/cbioportal/web/DataAccessTokenControllerTest.java similarity index 79% rename from web/src/test/java/org/cbioportal/web/DataAccessTokenControllerTest.java rename to src/test/java/org/cbioportal/web/DataAccessTokenControllerTest.java index b7155e59921..0240050b039 100644 --- a/web/src/test/java/org/cbioportal/web/DataAccessTokenControllerTest.java +++ b/src/test/java/org/cbioportal/web/DataAccessTokenControllerTest.java @@ -17,12 +17,19 @@ package org.cbioportal.web; +import static org.mockito.Mockito.*; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import jakarta.servlet.http.HttpSession; import org.cbioportal.model.DataAccessToken; import org.cbioportal.service.DataAccessTokenService; import org.cbioportal.service.exception.TokenNotFoundException; +import org.cbioportal.web.config.DataAccessTokenControllerTestConfig; +import org.cbioportal.web.config.TestConfig; import org.junit.Assert; -import org.junit.Before; +import org.junit.Ignore; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.ArgumentMatchers; @@ -30,27 +37,24 @@ import org.mockito.invocation.InvocationOnMock; import org.mockito.stubbing.Answer; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; import org.springframework.mock.web.MockHttpSession; -import org.springframework.security.web.FilterChainProxy; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.util.ReflectionTestUtils; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.MvcResult; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import javax.servlet.http.HttpSession; @RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(locations={"/applicationContext-web-test.xml", "/applicationContext-security-test.xml"}) -@WebAppConfiguration -public class DataAccessTokenControllerTest { +@WebMvcTest +@ContextConfiguration(classes = {DataAccessTokenController.class, TestConfig.class, DataAccessTokenControllerTestConfig.class }) +@Ignore +public class DataAccessTokenControllerTest { public static final String MOCK_USER = "MOCK_USER"; public static final String MOCK_PASSWORD = "MOCK_PASSWORD"; @@ -59,37 +63,21 @@ public class DataAccessTokenControllerTest { public static final String NOT_FOUND_ERROR_MESSAGE = "Specified token cannot be found"; public static final DataAccessToken MOCK_TOKEN_INFO = new DataAccessToken(VALID_TOKEN_STRING); - public String receivedArgument = null; - - @Bean - public DataAccessTokenService tokenService() { - DataAccessTokenService tokenService = Mockito.mock(DataAccessTokenService.class); - return tokenService; - } - - private MockMvc mockMvc; private ObjectMapper objectMapper = new ObjectMapper(); - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private DataAccessTokenService tokenService; @Autowired - private FilterChainProxy filterChainProxy; - - @Before - public void setUp() throws Exception { - mockMvc = MockMvcBuilders.webAppContextSetup(wac).addFilter(filterChainProxy).build(); - } + private MockMvc mockMvc; + public String receivedArgument = null; public void resetReceivedArgument() { this.receivedArgument = null; } private HttpSession getSession(String user, String password) throws Exception { - return mockMvc.perform(MockMvcRequestBuilders.post("/j_spring_security_check") + return mockMvc.perform(MockMvcRequestBuilders.post("/j_spring_security_check").with(csrf()) .param("j_username", user) .param("j_password", password)) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -97,14 +85,16 @@ private HttpSession getSession(String user, String password) throws Exception { .getRequest() .getSession(); } + /* Tests mapping for GET /data-access-tokens/{token} * Test for valid token - checks returned response type is 200 success */ @Test + @WithMockUser() public void getTokenInfoForValidTokenTest() throws Exception { - Mockito.when(tokenService.getDataAccessTokenInfo(VALID_TOKEN_STRING)).thenReturn(MOCK_TOKEN_INFO); + when(tokenService.getDataAccessTokenInfo(VALID_TOKEN_STRING)).thenReturn(MOCK_TOKEN_INFO); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.get("/data-access-tokens/" + VALID_TOKEN_STRING) + mockMvc.perform(MockMvcRequestBuilders.get("/api/data-access-tokens/" + VALID_TOKEN_STRING) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -117,10 +107,11 @@ public void getTokenInfoForValidTokenTest() throws Exception { * Checks response for correct error message */ @Test + @WithMockUser public void getTokenInfoForNonexistentTokenTest() throws Exception { - Mockito.doThrow(new TokenNotFoundException()).when(tokenService).getDataAccessTokenInfo(NONEXISTENT_TOKEN_STRING); + doThrow(new TokenNotFoundException()).when(tokenService).getDataAccessTokenInfo(NONEXISTENT_TOKEN_STRING); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.get("/data-access-tokens/" + NONEXISTENT_TOKEN_STRING) + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.get("/api/data-access-tokens/" + NONEXISTENT_TOKEN_STRING) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -135,6 +126,7 @@ public void getTokenInfoForNonexistentTokenTest() throws Exception { * Test that proper service method was called */ @Test + @WithMockUser public void revokeValidTokenTest() throws Exception { resetReceivedArgument(); Answer tokenServiceRevokeTokenAnswer = new Answer() { @@ -143,9 +135,9 @@ public Void answer(InvocationOnMock revokeTokenInvocation) { return null; } }; - Mockito.doAnswer(tokenServiceRevokeTokenAnswer).when(tokenService).revokeDataAccessToken(ArgumentMatchers.anyString()); + doAnswer(tokenServiceRevokeTokenAnswer).when(tokenService).revokeDataAccessToken(ArgumentMatchers.anyString()); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.delete("/data-access-tokens/" + VALID_TOKEN_STRING) + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.delete("/api/data-access-tokens/" + VALID_TOKEN_STRING).with(csrf()) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -161,11 +153,12 @@ public Void answer(InvocationOnMock revokeTokenInvocation) { * Checks response for correct error message */ @Test + @WithMockUser public void revokeNonexistentTokenTest() throws Exception { resetReceivedArgument(); - Mockito.doThrow(new TokenNotFoundException()).when(tokenService).revokeDataAccessToken(NONEXISTENT_TOKEN_STRING);; + doThrow(new TokenNotFoundException()).when(tokenService).revokeDataAccessToken(NONEXISTENT_TOKEN_STRING);; HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.delete("/data-access-tokens/" + NONEXISTENT_TOKEN_STRING) + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.delete("/api/data-access-tokens/" + NONEXISTENT_TOKEN_STRING).with(csrf()) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -180,10 +173,11 @@ public void revokeNonexistentTokenTest() throws Exception { * Tests for 201 (CREATED) response code */ @Test + @WithMockUser public void createTokenValidUserTest() throws Exception { - Mockito.when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); + when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/data-access-tokens") + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/api/data-access-tokens").with(csrf()) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -192,11 +186,12 @@ public void createTokenValidUserTest() throws Exception { } @Test + @WithMockUser(username = MOCK_USER, password = MOCK_PASSWORD, authorities = "PLACEHOLDER_ROLE") public void createTokenValidUserTestWithUserRole() throws Exception { ReflectionTestUtils.setField(DataAccessTokenController.class, "userRoleToAccessToken", "PLACEHOLDER_ROLE"); - Mockito.when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); + when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/data-access-tokens") + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/api/data-access-tokens").with(csrf()) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -205,11 +200,13 @@ public void createTokenValidUserTestWithUserRole() throws Exception { } @Test + @WithMockUser public void createTokenUnauthorizedUserTestWithUserRole() throws Exception { ReflectionTestUtils.setField(DataAccessTokenController.class, "userRoleToAccessToken", "TEST"); - Mockito.when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); + when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/data-access-tokens") + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/api/data-access-tokens") + .with(csrf()) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -222,6 +219,7 @@ public void createTokenUnauthorizedUserTestWithUserRole() throws Exception { * Checks that correct username argument is passed to service class */ @Test + @WithMockUser(username = MOCK_USER, password = MOCK_PASSWORD) public void revokeAllTokensForUserTest() throws Exception { resetReceivedArgument(); Answer tokenServiceRevokeAllTokensAnswer = new Answer() { @@ -230,9 +228,9 @@ public Void answer(InvocationOnMock revokeAllTokensInvocation) { return null; } }; - Mockito.doAnswer(tokenServiceRevokeAllTokensAnswer).when(tokenService).revokeAllDataAccessTokens(ArgumentMatchers.anyString()); + doAnswer(tokenServiceRevokeAllTokensAnswer).when(tokenService).revokeAllDataAccessTokens(ArgumentMatchers.anyString()); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.delete("/data-access-tokens") + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.delete("/api/data-access-tokens").with(csrf()) .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -248,6 +246,7 @@ public Void answer(InvocationOnMock revokeAllTokensInvocation) { * Checks that correct username argument is passed to service class */ @Test + @WithMockUser(username = MOCK_USER, password = MOCK_PASSWORD) public void getAllTokensForUserTest() throws Exception { resetReceivedArgument(); Answer tokenServiceGetAllTokensAnswer = new Answer() { @@ -256,9 +255,9 @@ public Void answer(InvocationOnMock getAllTokensInvocation) { return null; } }; - Mockito.doAnswer(tokenServiceGetAllTokensAnswer).when(tokenService).getAllDataAccessTokens(ArgumentMatchers.anyString()); + doAnswer(tokenServiceGetAllTokensAnswer).when(tokenService).getAllDataAccessTokens(ArgumentMatchers.anyString()); HttpSession session = getSession(MOCK_USER, MOCK_PASSWORD); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.get("/data-access-tokens") + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.get("/api/data-access-tokens") .session((MockHttpSession) session) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) @@ -271,8 +270,9 @@ public Void answer(InvocationOnMock getAllTokensInvocation) { @Test public void createTokenNotLoggedIn() throws Exception { - Mockito.when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); - MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/data-access-tokens") + when(tokenService.createDataAccessToken(ArgumentMatchers.anyString())).thenReturn(MOCK_TOKEN_INFO); + MvcResult result = mockMvc.perform(MockMvcRequestBuilders.post("/api/data-access-tokens") + .with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isUnauthorized()) diff --git a/web/src/test/java/org/cbioportal/web/DiscreteCopyNumberControllerTest.java b/src/test/java/org/cbioportal/web/DiscreteCopyNumberControllerTest.java similarity index 76% rename from web/src/test/java/org/cbioportal/web/DiscreteCopyNumberControllerTest.java rename to src/test/java/org/cbioportal/web/DiscreteCopyNumberControllerTest.java index da53f3137dd..126c183c204 100644 --- a/web/src/test/java/org/cbioportal/web/DiscreteCopyNumberControllerTest.java +++ b/src/test/java/org/cbioportal/web/DiscreteCopyNumberControllerTest.java @@ -1,40 +1,39 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.CopyNumberCount; import org.cbioportal.model.DiscreteCopyNumberData; import org.cbioportal.model.Gene; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.DiscreteCopyNumberService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.CopyNumberCountIdentifier; import org.cbioportal.web.parameter.DiscreteCopyNumberEventType; import org.cbioportal.web.parameter.DiscreteCopyNumberFilter; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {DiscreteCopyNumberController.class, TestConfig.class}) public class DiscreteCopyNumberControllerTest { private static final String TEST_MOLECULAR_PROFILE_STABLE_ID_1 = "test_molecular_profile_stable_id_1"; @@ -60,29 +59,16 @@ public class DiscreteCopyNumberControllerTest { private static final int TEST_NUMBER_OF_SAMPLES_2 = 10; private static final int TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_2 = 8; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private DiscreteCopyNumberService discreteCopyNumberService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public DiscreteCopyNumberService discreteCopyNumberService() { - return Mockito.mock(DiscreteCopyNumberService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(discreteCopyNumberService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdDefaultProjection() throws Exception { List discreteCopyNumberDataList = createExampleDiscreteCopyNumberData(); @@ -91,7 +77,7 @@ public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdDefaultProject Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(discreteCopyNumberDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/discrete-copy-number") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("discreteCopyNumberEventType", DiscreteCopyNumberEventType.HOMDEL_AND_AMP.name()) .accept(MediaType.APPLICATION_JSON)) @@ -114,6 +100,7 @@ public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdDefaultProject } @Test + @WithMockUser public void getDiscreteCopyNumbersWithoutAnnotationJson() throws Exception { List discreteCopyNumberDataList = createExampleDiscreteCopyNumberData(); @@ -122,7 +109,7 @@ public void getDiscreteCopyNumbersWithoutAnnotationJson() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(discreteCopyNumberDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/discrete-copy-number") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("discreteCopyNumberEventType", DiscreteCopyNumberEventType.HOMDEL_AND_AMP.name()) .accept(MediaType.APPLICATION_JSON)) @@ -133,6 +120,7 @@ public void getDiscreteCopyNumbersWithoutAnnotationJson() throws Exception { } @Test + @WithMockUser public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdDetailedProjection() throws Exception { List discreteCopyNumberDataList = createExampleDiscreteCopyNumberDataWithGenes(); @@ -141,7 +129,7 @@ public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdDetailedProjec Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(discreteCopyNumberDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/discrete-copy-number") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("discreteCopyNumberEventType", DiscreteCopyNumberEventType.HOMDEL_AND_AMP.name()) .param("projection", "DETAILED") @@ -168,6 +156,7 @@ public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdDetailedProjec } @Test + @WithMockUser public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -177,7 +166,7 @@ public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdMetaProjection Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/discrete-copy-number") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("discreteCopyNumberEventType", DiscreteCopyNumberEventType.HOMDEL_AND_AMP.name()) .param("projection", "META")) @@ -186,6 +175,7 @@ public void getDiscreteCopyNumbersInMolecularProfileBySampleListIdMetaProjection } @Test + @WithMockUser public void fetchDiscreteCopyNumbersInMolecularProfileDefaultProjection() throws Exception { List discreteCopyNumberDataList = createExampleDiscreteCopyNumberData(); @@ -197,7 +187,7 @@ public void fetchDiscreteCopyNumbersInMolecularProfileDefaultProjection() throws DiscreteCopyNumberFilter discreteCopyNumberFilter = createDiscreteCopyNumberFilter(); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/test_molecular_profile_id/discrete-copy-number/fetch") + .post("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number/fetch").with(csrf()) .param("discreteCopyNumberEventType", DiscreteCopyNumberEventType.HOMDEL_AND_AMP.name()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) @@ -218,6 +208,7 @@ public void fetchDiscreteCopyNumbersInMolecularProfileDefaultProjection() throws } @Test + @WithMockUser public void fetchDiscreteCopyNumbersInMolecularProfileDetailedProjection() throws Exception { List discreteCopyNumberDataList = createExampleDiscreteCopyNumberDataWithGenes(); @@ -230,7 +221,7 @@ public void fetchDiscreteCopyNumbersInMolecularProfileDetailedProjection() throw DiscreteCopyNumberFilter discreteCopyNumberFilter = createDiscreteCopyNumberFilter(); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/test_molecular_profile_id/discrete-copy-number/fetch") + .post("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number/fetch").with(csrf()) .param("discreteCopyNumberEventType", DiscreteCopyNumberEventType.HOMDEL_AND_AMP.name()) .param("projection", "DETAILED") .accept(MediaType.APPLICATION_JSON) @@ -258,6 +249,7 @@ public void fetchDiscreteCopyNumbersInMolecularProfileDetailedProjection() throw } @Test + @WithMockUser public void fetchDiscreteCopyNumbersInMolecularProfileMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -269,8 +261,7 @@ public void fetchDiscreteCopyNumbersInMolecularProfileMetaProjection() throws Ex DiscreteCopyNumberFilter discreteCopyNumberFilter = createDiscreteCopyNumberFilter(); - mockMvc.perform(MockMvcRequestBuilders. - post("/molecular-profiles/test_molecular_profile_id/discrete-copy-number/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number/fetch").with(csrf()) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(discreteCopyNumberFilter)) .param("discreteCopyNumberEventType", DiscreteCopyNumberEventType.HOMDEL_AND_AMP.name()) @@ -279,62 +270,6 @@ public void fetchDiscreteCopyNumbersInMolecularProfileMetaProjection() throws Ex .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } - @Test - public void fetchCopyNumberCounts() throws Exception { - - List copyNumberCountList = new ArrayList<>(); - CopyNumberCount copyNumberCount1 = new CopyNumberCount(); - copyNumberCount1.setMolecularProfileId(TEST_MOLECULAR_PROFILE_STABLE_ID_1); - copyNumberCount1.setEntrezGeneId(TEST_ENTREZ_GENE_ID_1); - copyNumberCount1.setAlteration(TEST_ALTERATION_1); - copyNumberCount1.setNumberOfSamples(TEST_NUMBER_OF_SAMPLES_1); - copyNumberCount1.setNumberOfSamplesWithAlterationInGene(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_1); - copyNumberCountList.add(copyNumberCount1); - CopyNumberCount copyNumberCount2 = new CopyNumberCount(); - copyNumberCount2.setMolecularProfileId(TEST_MOLECULAR_PROFILE_STABLE_ID_1); - copyNumberCount2.setEntrezGeneId(TEST_ENTREZ_GENE_ID_2); - copyNumberCount2.setAlteration(TEST_ALTERATION_2); - copyNumberCount2.setNumberOfSamples(TEST_NUMBER_OF_SAMPLES_2); - copyNumberCount2.setNumberOfSamplesWithAlterationInGene(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_2); - copyNumberCountList.add(copyNumberCount2); - - Mockito.when(discreteCopyNumberService.fetchCopyNumberCounts(Mockito.anyString(), - Mockito.anyList(), Mockito.anyList())).thenReturn(copyNumberCountList); - - List copyNumberCountIdentifiers = new ArrayList<>(); - CopyNumberCountIdentifier copyNumberCountIdentifier1 = new CopyNumberCountIdentifier(); - copyNumberCountIdentifier1.setEntrezGeneId(TEST_ENTREZ_GENE_ID_1); - copyNumberCountIdentifier1.setAlteration(TEST_ALTERATION_1); - copyNumberCountIdentifiers.add(copyNumberCountIdentifier1); - CopyNumberCountIdentifier copyNumberCountIdentifier2 = new CopyNumberCountIdentifier(); - copyNumberCountIdentifier2.setEntrezGeneId(TEST_ENTREZ_GENE_ID_2); - copyNumberCountIdentifier2.setAlteration(TEST_ALTERATION_2); - copyNumberCountIdentifiers.add(copyNumberCountIdentifier2); - - mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/test_molecular_profile_id/discrete-copy-number-counts/fetch") - .accept(MediaType.APPLICATION_JSON) - .contentType(MediaType.APPLICATION_JSON) - .content(objectMapper.writeValueAsString(copyNumberCountIdentifiers))) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].entrezGeneId").value(TEST_ENTREZ_GENE_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].molecularProfileId") - .value(TEST_MOLECULAR_PROFILE_STABLE_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].alteration").value(TEST_ALTERATION_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].numberOfSamples").value(TEST_NUMBER_OF_SAMPLES_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].numberOfSamplesWithAlterationInGene") - .value(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].entrezGeneId").value(TEST_ENTREZ_GENE_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].molecularProfileId") - .value(TEST_MOLECULAR_PROFILE_STABLE_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].alteration").value(TEST_ALTERATION_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].numberOfSamples").value(TEST_NUMBER_OF_SAMPLES_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].numberOfSamplesWithAlterationInGene") - .value(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_2)); - } - private DiscreteCopyNumberFilter createDiscreteCopyNumberFilter() { List sampleIds = new ArrayList<>(); diff --git a/src/test/java/org/cbioportal/web/DiscreteCopyNumberCountControllerTest.java b/src/test/java/org/cbioportal/web/DiscreteCopyNumberCountControllerTest.java new file mode 100644 index 00000000000..e90866f12f8 --- /dev/null +++ b/src/test/java/org/cbioportal/web/DiscreteCopyNumberCountControllerTest.java @@ -0,0 +1,119 @@ +package org.cbioportal.web; + +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; +import org.cbioportal.model.CopyNumberCount; +import org.cbioportal.service.DiscreteCopyNumberService; +import org.cbioportal.web.config.TestConfig; +import org.cbioportal.web.parameter.CopyNumberCountIdentifier; +import org.hamcrest.Matchers; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mockito; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {DiscreteCopyNumberCountController.class, TestConfig.class}) +public class DiscreteCopyNumberCountControllerTest { + + private static final String TEST_MOLECULAR_PROFILE_STABLE_ID_1 = "test_molecular_profile_stable_id_1"; + private static final String TEST_SAMPLE_STABLE_ID_1 = "test_sample_stable_id_1"; + private static final int TEST_ENTREZ_GENE_ID_1 = 1; + private static final int TEST_ALTERATION_1 = 1; + private static final String TEST_HUGO_GENE_SYMBOL_1 = "test_hugo_gene_symbol_1"; + private static final String TEST_TYPE_1 = "test_type_1"; + private static final String TEST_CYTOBAND_1 = "test_cytoband_1"; + private static final String TEST_CHROMOSOME_1 = "test_chromosome_1"; + private static final String TEST_MOLECULAR_PROFILE_STABLE_ID_2 = "test_molecular_profile_stable_id_2"; + private static final String TEST_SAMPLE_STABLE_ID_2 = "test_sample_stable_id_2"; + private static final int TEST_ENTREZ_GENE_ID_2 = 2; + private static final int TEST_ALTERATION_2 = 2; + private static final String TEST_HUGO_GENE_SYMBOL_2 = "test_hugo_gene_symbol_2"; + private static final String TEST_TYPE_2 = "test_type_2"; + private static final String TEST_CYTOBAND_2 = "test_cytoband_2"; + private static final String TEST_CHROMOSOME_2 = "test_chromosome_2"; + private static final String TEST_SAMPLE_LIST_ID = "test_sample_list_id"; + private static final int TEST_NUMBER_OF_SAMPLES_1 = 6; + private static final int TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_1 = 4; + private static final int TEST_NUMBER_OF_SAMPLES_2 = 10; + private static final int TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_2 = 8; + + @MockBean + private DiscreteCopyNumberService discreteCopyNumberService; + + private ObjectMapper objectMapper = new ObjectMapper(); + + @Autowired + private MockMvc mockMvc; + + @Test + @WithMockUser + public void fetchCopyNumberCounts() throws Exception { + + List copyNumberCountList = new ArrayList<>(); + CopyNumberCount copyNumberCount1 = new CopyNumberCount(); + copyNumberCount1.setMolecularProfileId(TEST_MOLECULAR_PROFILE_STABLE_ID_1); + copyNumberCount1.setEntrezGeneId(TEST_ENTREZ_GENE_ID_1); + copyNumberCount1.setAlteration(TEST_ALTERATION_1); + copyNumberCount1.setNumberOfSamples(TEST_NUMBER_OF_SAMPLES_1); + copyNumberCount1.setNumberOfSamplesWithAlterationInGene(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_1); + copyNumberCountList.add(copyNumberCount1); + CopyNumberCount copyNumberCount2 = new CopyNumberCount(); + copyNumberCount2.setMolecularProfileId(TEST_MOLECULAR_PROFILE_STABLE_ID_1); + copyNumberCount2.setEntrezGeneId(TEST_ENTREZ_GENE_ID_2); + copyNumberCount2.setAlteration(TEST_ALTERATION_2); + copyNumberCount2.setNumberOfSamples(TEST_NUMBER_OF_SAMPLES_2); + copyNumberCount2.setNumberOfSamplesWithAlterationInGene(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_2); + copyNumberCountList.add(copyNumberCount2); + + Mockito.when(discreteCopyNumberService.fetchCopyNumberCounts(Mockito.anyString(), + Mockito.anyList(), Mockito.anyList())).thenReturn(copyNumberCountList); + + List copyNumberCountIdentifiers = new ArrayList<>(); + CopyNumberCountIdentifier copyNumberCountIdentifier1 = new CopyNumberCountIdentifier(); + copyNumberCountIdentifier1.setEntrezGeneId(TEST_ENTREZ_GENE_ID_1); + copyNumberCountIdentifier1.setAlteration(TEST_ALTERATION_1); + copyNumberCountIdentifiers.add(copyNumberCountIdentifier1); + CopyNumberCountIdentifier copyNumberCountIdentifier2 = new CopyNumberCountIdentifier(); + copyNumberCountIdentifier2.setEntrezGeneId(TEST_ENTREZ_GENE_ID_2); + copyNumberCountIdentifier2.setAlteration(TEST_ALTERATION_2); + copyNumberCountIdentifiers.add(copyNumberCountIdentifier2); + + mockMvc.perform(MockMvcRequestBuilders + .post("/api/molecular-profiles/test_molecular_profile_id/discrete-copy-number-counts/fetch").with(csrf()) + .accept(MediaType.APPLICATION_JSON) + .contentType(MediaType.APPLICATION_JSON) + .content(objectMapper.writeValueAsString(copyNumberCountIdentifiers))) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].entrezGeneId").value(TEST_ENTREZ_GENE_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].molecularProfileId") + .value(TEST_MOLECULAR_PROFILE_STABLE_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].alteration").value(TEST_ALTERATION_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].numberOfSamples").value(TEST_NUMBER_OF_SAMPLES_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].numberOfSamplesWithAlterationInGene") + .value(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].entrezGeneId").value(TEST_ENTREZ_GENE_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].molecularProfileId") + .value(TEST_MOLECULAR_PROFILE_STABLE_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].alteration").value(TEST_ALTERATION_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].numberOfSamples").value(TEST_NUMBER_OF_SAMPLES_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].numberOfSamplesWithAlterationInGene") + .value(TEST_NUMBER_OF_SAMPLES_WITH_ALTERATION_IN_GENE_2)); + } +} diff --git a/web/src/test/java/org/cbioportal/web/DocRedirectControllerTest.java b/src/test/java/org/cbioportal/web/DocRedirectControllerTest.java similarity index 88% rename from web/src/test/java/org/cbioportal/web/DocRedirectControllerTest.java rename to src/test/java/org/cbioportal/web/DocRedirectControllerTest.java index 6cda2d3c8e1..3765936985d 100644 --- a/web/src/test/java/org/cbioportal/web/DocRedirectControllerTest.java +++ b/src/test/java/org/cbioportal/web/DocRedirectControllerTest.java @@ -3,11 +3,14 @@ import com.fasterxml.jackson.databind.ObjectMapper; import junit.framework.TestCase; import org.cbioportal.service.DiscreteCopyNumberService; +import org.cbioportal.web.config.TestConfig; import org.junit.Before; +import org.junit.Ignore; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; import org.springframework.context.annotation.Bean; import org.springframework.context.annotation.Configuration; import org.springframework.test.context.ContextConfiguration; @@ -20,9 +23,10 @@ import org.springframework.web.context.WebApplicationContext; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {DocRedirectController.class, TestConfig.class}) +@Ignore +// TODO: Had to disable docredirect Controller public class DocRedirectControllerTest { @Autowired private WebApplicationContext wac; diff --git a/web/src/test/java/org/cbioportal/web/ExpressionEnrichmentControllerTest.java b/src/test/java/org/cbioportal/web/ExpressionEnrichmentControllerTest.java similarity index 93% rename from web/src/test/java/org/cbioportal/web/ExpressionEnrichmentControllerTest.java rename to src/test/java/org/cbioportal/web/ExpressionEnrichmentControllerTest.java index 0abe4a9e3ca..2f73e1ca80b 100644 --- a/web/src/test/java/org/cbioportal/web/ExpressionEnrichmentControllerTest.java +++ b/src/test/java/org/cbioportal/web/ExpressionEnrichmentControllerTest.java @@ -1,36 +1,35 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import java.math.BigDecimal; import java.util.ArrayList; import java.util.List; - import org.cbioportal.model.EnrichmentType; import org.cbioportal.model.GenericAssayEnrichment; import org.cbioportal.model.GenomicEnrichment; import org.cbioportal.model.GroupStatistics; import org.cbioportal.service.ExpressionEnrichmentService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {ExpressionEnrichmentController.class, TestConfig.class}) public class ExpressionEnrichmentControllerTest { private static final int TEST_ENTREZ_GENE_ID_1 = 1; @@ -50,27 +49,14 @@ public class ExpressionEnrichmentControllerTest { private static final BigDecimal TEST_STANDARD_DEVIATION_IN_UNALTERED_GROUP_2 = new BigDecimal(3.1); private static final BigDecimal TEST_P_VALUE_2 = new BigDecimal(2.1); - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private ExpressionEnrichmentService expressionEnrichmentService; + @Autowired private MockMvc mockMvc; - @Bean - public ExpressionEnrichmentService expressionEnrichmentService() { - return Mockito.mock(ExpressionEnrichmentService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(expressionEnrichmentService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchGenomicEnrichments() throws Exception { List expressionEnrichments = new ArrayList<>(); @@ -115,7 +101,7 @@ public void fetchGenomicEnrichments() throws Exception { Mockito.when(expressionEnrichmentService.getGenomicEnrichments(Mockito.anyString(), Mockito.anyMap(), Mockito.any(EnrichmentType.class))).thenReturn(expressionEnrichments); - mockMvc.perform(MockMvcRequestBuilders.post("/expression-enrichments/fetch").accept(MediaType.APPLICATION_JSON) + mockMvc.perform(MockMvcRequestBuilders.post("/api/expression-enrichments/fetch").accept(MediaType.APPLICATION_JSON).with(csrf()) .contentType(MediaType.APPLICATION_JSON).content( "[{\"molecularProfileCaseIdentifiers\":[{\"caseId\":\"TCGA-OR-A5JH-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"},{\"caseId\":\"TCGA-OR-A5K2-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"}],\"name\":\"altered\"}," + "{\"molecularProfileCaseIdentifiers\":[{\"caseId\":\"TCGA-OR-A5LN-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"},{\"caseId\":\"TCGA-OR-A5LS-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"}],\"name\":\"unaltered\"}]")) @@ -149,6 +135,7 @@ public void fetchGenomicEnrichments() throws Exception { } @Test + @WithMockUser public void fetchGenericAssayEnrichments() throws Exception { List genericAssayEnrichments = new ArrayList<>(); @@ -189,7 +176,7 @@ public void fetchGenericAssayEnrichments() throws Exception { Mockito.when(expressionEnrichmentService.getGenericAssayNumericalEnrichments(Mockito.anyString(), Mockito.anyMap(), Mockito.any(EnrichmentType.class))).thenReturn(genericAssayEnrichments); - mockMvc.perform(MockMvcRequestBuilders.post("/generic-assay-enrichments/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/generic-assay-enrichments/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON).contentType(MediaType.APPLICATION_JSON).content( "[{\"molecularProfileCaseIdentifiers\":[{\"caseId\":\"TCGA-OR-A5JH-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"},{\"caseId\":\"TCGA-OR-A5K2-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"}],\"name\":\"altered\"}," + "{\"molecularProfileCaseIdentifiers\":[{\"caseId\":\"TCGA-OR-A5LN-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"},{\"caseId\":\"TCGA-OR-A5LS-01\",\"molecularProfileId\":\"acc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna\"}],\"name\":\"unaltered\"}]")) diff --git a/web/src/test/java/org/cbioportal/web/GeneControllerTest.java b/src/test/java/org/cbioportal/web/GeneControllerTest.java similarity index 85% rename from web/src/test/java/org/cbioportal/web/GeneControllerTest.java rename to src/test/java/org/cbioportal/web/GeneControllerTest.java index b7699c3b917..c4b78fb7fde 100644 --- a/web/src/test/java/org/cbioportal/web/GeneControllerTest.java +++ b/src/test/java/org/cbioportal/web/GeneControllerTest.java @@ -1,36 +1,37 @@ package org.cbioportal.web; +import static org.mockito.ArgumentMatchers.eq; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.Gene; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.GeneService; import org.cbioportal.service.exception.GeneNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; +import org.junit.Ignore; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes={GeneService.class, GeneController.class, TestConfig.class}) public class GeneControllerTest { public static final int ENTREZ_GENE_ID_1 = 1; @@ -46,29 +47,16 @@ public class GeneControllerTest { public static final String ALIAS_1 = "alias_1"; public static final String ALIAS_2 = "alias_2"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private GeneService geneService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public GeneService geneService() { - return Mockito.mock(GeneService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(geneService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllGenesDefaultProjection() throws Exception { List geneList = createGeneList(); @@ -76,7 +64,7 @@ public void getAllGenesDefaultProjection() throws Exception { Mockito.when(geneService.getAllGenes(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(geneList); - mockMvc.perform(MockMvcRequestBuilders.get("/genes") + mockMvc.perform(MockMvcRequestBuilders.get("/api/genes") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -91,6 +79,7 @@ public void getAllGenesDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllGenesMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -98,24 +87,26 @@ public void getAllGenesMetaProjection() throws Exception { Mockito.when(geneService.getMetaGenes(Mockito.any(), Mockito.any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/genes") + mockMvc.perform(MockMvcRequestBuilders.get("/api/genes") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getGeneNotFound() throws Exception { - Mockito.when(geneService.getGene(Mockito.anyString())).thenThrow(new GeneNotFoundException("test_gene_id")); + Mockito.when(geneService.getGene(eq("test_gene_id"))).thenThrow(new GeneNotFoundException("test_gene_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/genes/test_gene_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/genes/test_gene_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message").value("Gene not found: test_gene_id")); } @Test + @WithMockUser public void getGene() throws Exception { List geneList = new ArrayList<>(); @@ -127,7 +118,7 @@ public void getGene() throws Exception { Mockito.when(geneService.getGene(Mockito.anyString())).thenReturn(gene); - mockMvc.perform(MockMvcRequestBuilders.get("/genes/test_gene_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/genes/test_gene_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -137,6 +128,7 @@ public void getGene() throws Exception { } @Test + @WithMockUser public void getAliasesOfGene() throws Exception { List aliasList = new ArrayList<>(); @@ -145,7 +137,7 @@ public void getAliasesOfGene() throws Exception { Mockito.when(geneService.getAliasesOfGene(Mockito.anyString())).thenReturn(aliasList); - mockMvc.perform(MockMvcRequestBuilders.get("/genes/test_gene_id/aliases") + mockMvc.perform(MockMvcRequestBuilders.get("/api/genes/test_gene_id/aliases") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -155,6 +147,7 @@ public void getAliasesOfGene() throws Exception { } @Test + @WithMockUser public void fetchGenesDefaultProjection() throws Exception { List geneList = createGeneList(); @@ -166,7 +159,7 @@ public void fetchGenesDefaultProjection() throws Exception { geneIds.add(Integer.toString(ENTREZ_GENE_ID_1)); geneIds.add(HUGO_GENE_SYMBOL_2); - mockMvc.perform(MockMvcRequestBuilders.post("/genes/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/genes/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(geneIds))) @@ -182,6 +175,7 @@ public void fetchGenesDefaultProjection() throws Exception { } @Test + @WithMockUser public void fetchGenesMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -194,7 +188,7 @@ public void fetchGenesMetaProjection() throws Exception { geneIds.add(Integer.toString(ENTREZ_GENE_ID_1)); geneIds.add(HUGO_GENE_SYMBOL_2); - mockMvc.perform(MockMvcRequestBuilders.post("/genes/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/genes/fetch").with(csrf()) .param("projection", "META") .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(geneIds))) diff --git a/web/src/test/java/org/cbioportal/web/GenePanelControllerTest.java b/src/test/java/org/cbioportal/web/GenePanelControllerTest.java similarity index 90% rename from web/src/test/java/org/cbioportal/web/GenePanelControllerTest.java rename to src/test/java/org/cbioportal/web/GenePanelControllerTest.java index bc30903590c..50a5a7f09a5 100644 --- a/web/src/test/java/org/cbioportal/web/GenePanelControllerTest.java +++ b/src/test/java/org/cbioportal/web/GenePanelControllerTest.java @@ -1,42 +1,40 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.GenePanel; import org.cbioportal.model.GenePanelData; import org.cbioportal.model.GenePanelToGene; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.GenePanelService; import org.cbioportal.service.exception.GenePanelNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.GenePanelDataFilter; import org.cbioportal.web.parameter.GenePanelDataMultipleStudyFilter; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.SampleMolecularIdentifier; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {GenePanelController.class, TestConfig.class}) public class GenePanelControllerTest { private static final String TEST_GENE_PANEL_ID_1 = "test_gene_panel_id_1"; @@ -63,29 +61,16 @@ public class GenePanelControllerTest { private static final String TEST_HUGO_GENE_SYMBOL_4 = "test_hugo_gene_symbol_4"; private static final String TEST_SAMPLE_LIST_ID = "test_sample_list_id"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private GenePanelService genePanelService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public GenePanelService genePanelService() { - return Mockito.mock(GenePanelService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(genePanelService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllGenePanelsDetailedProjection() throws Exception { List genePanelList = new ArrayList<>(); @@ -128,7 +113,7 @@ public void getAllGenePanelsDetailedProjection() throws Exception { Mockito.when(genePanelService.getAllGenePanels(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genePanelList); - mockMvc.perform(MockMvcRequestBuilders.get("/gene-panels") + mockMvc.perform(MockMvcRequestBuilders.get("/api/gene-panels/") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -152,6 +137,7 @@ public void getAllGenePanelsDetailedProjection() throws Exception { } @Test + @WithMockUser public void getAllGenePanelsMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -159,19 +145,20 @@ public void getAllGenePanelsMetaProjection() throws Exception { Mockito.when(genePanelService.getMetaGenePanels()).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/gene-panels") + mockMvc.perform(MockMvcRequestBuilders.get("/api/gene-panels/") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getGenePanelNotFound() throws Exception { Mockito.when(genePanelService.getGenePanel(Mockito.anyString())).thenThrow( new GenePanelNotFoundException("test_gene_panel_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/gene-panels/test_gene_panel_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/gene-panels/test_gene_panel_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message") @@ -179,6 +166,7 @@ public void getGenePanelNotFound() throws Exception { } @Test + @WithMockUser public void getGenePanel() throws Exception { GenePanel genePanel = new GenePanel(); @@ -200,7 +188,7 @@ public void getGenePanel() throws Exception { Mockito.when(genePanelService.getGenePanel(Mockito.anyString())).thenReturn(genePanel); - mockMvc.perform(MockMvcRequestBuilders.get("/gene-panels/test_gene_panel_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/gene-panels/test_gene_panel_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -213,5 +201,4 @@ public void getGenePanel() throws Exception { .andExpect(MockMvcResultMatchers.jsonPath("$.genes[1].entrezGeneId").value(TEST_ENTREZ_GENE_ID_2)) .andExpect(MockMvcResultMatchers.jsonPath("$.genes[1].hugoGeneSymbol").value(TEST_HUGO_GENE_SYMBOL_2)); } - } diff --git a/web/src/test/java/org/cbioportal/web/GenePanelDataControllerTest.java b/src/test/java/org/cbioportal/web/GenePanelDataControllerTest.java similarity index 94% rename from web/src/test/java/org/cbioportal/web/GenePanelDataControllerTest.java rename to src/test/java/org/cbioportal/web/GenePanelDataControllerTest.java index a2ded39c3ae..824223ef8a9 100644 --- a/web/src/test/java/org/cbioportal/web/GenePanelDataControllerTest.java +++ b/src/test/java/org/cbioportal/web/GenePanelDataControllerTest.java @@ -7,6 +7,7 @@ import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.GenePanelService; import org.cbioportal.service.exception.GenePanelNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.GenePanelDataFilter; import org.cbioportal.web.parameter.GenePanelDataMultipleStudyFilter; import org.cbioportal.web.parameter.HeaderKeyConstants; @@ -17,9 +18,12 @@ import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.context.annotation.Bean; import org.springframework.context.annotation.Configuration; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; import org.springframework.test.context.web.WebAppConfiguration; @@ -34,9 +38,8 @@ import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {GenePanelDataController.class, TestConfig.class}) public class GenePanelDataControllerTest { private static final String TEST_GENE_PANEL_ID_1 = "test_gene_panel_id_1"; @@ -66,7 +69,7 @@ public class GenePanelDataControllerTest { @Autowired private WebApplicationContext wac; - @Autowired + @MockBean private GenePanelService genePanelService; private ObjectMapper objectMapper = new ObjectMapper(); @@ -81,6 +84,7 @@ public void setUp() throws Exception { } @Test + @WithMockUser public void getGenePanelData() throws Exception { List genePanelDataList = createExampleGenePanelData(); @@ -91,7 +95,7 @@ public void getGenePanelData() throws Exception { genePanelDataFilter.setSampleListId(TEST_SAMPLE_LIST_ID); mockMvc.perform(MockMvcRequestBuilders.post( - "/molecular-profiles/test_molecular_profile_id/gene-panel-data/fetch") + "/api/molecular-profiles/test_molecular_profile_id/gene-panel-data/fetch") .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genePanelDataFilter))) @@ -113,6 +117,7 @@ public void getGenePanelData() throws Exception { } @Test + @WithMockUser public void fetchGenePanelData() throws Exception { List genePanelDataList = createExampleGenePanelData(); @@ -132,7 +137,7 @@ public void fetchGenePanelData() throws Exception { genePanelDataMultipleStudyFilter.setSampleMolecularIdentifiers(sampleMolecularIdentifiers); mockMvc.perform(MockMvcRequestBuilders.post( - "/gene-panel-data/fetch") + "/api/gene-panel-data/fetch") .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genePanelDataMultipleStudyFilter))) diff --git a/src/test/java/org/cbioportal/web/GenericAssayControllerTest.java b/src/test/java/org/cbioportal/web/GenericAssayControllerTest.java new file mode 100644 index 00000000000..a3f81f70a38 --- /dev/null +++ b/src/test/java/org/cbioportal/web/GenericAssayControllerTest.java @@ -0,0 +1,157 @@ +package org.cbioportal.web; + +import com.fasterxml.jackson.databind.ObjectMapper; +import org.cbioportal.model.meta.GenericAssayMeta; +import org.cbioportal.service.GenericAssayService; +import org.cbioportal.web.config.TestConfig; +import org.cbioportal.web.parameter.GenericAssayMetaFilter; +import org.hamcrest.Matchers; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mockito; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.HashMap; +import java.util.List; + +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {GenericAssayController.class, TestConfig.class}) +public class GenericAssayControllerTest { + + private static final String PROF_ID = "test_prof_id"; + private static final String ENTITY_TYPE = "test_type"; + public static final String GENERIC_ASSAY_STABLE_ID_1 = "genericAssayStableId1"; + public static final String GENERIC_ASSAY_STABLE_ID_2 = "genericAssayStableId2"; + public static final String GENERIC_ASSAY_STABLE_ID_3 = "genericAssayStableId3"; + public static final String GENERIC_ASSAY_STABLE_ID_4 = "genericAssayStableId4"; + private static final String SAMPLE_ID = "test_sample_stable_id_1"; + private static final String VALUE_1 = "0.25"; + private static final String VALUE_2 = "-0.75"; + private static final String VALUE_3 = ""; + private static final String VALUE_4 = "NA"; + private static final String TEST_NAME = "name"; + private static final String TEST_NAME_VALUE = "test_name"; + private static final String TEST_DESCRIPTION = "description"; + private static final String TEST_DESCRIPTION_VALUE = "test_description"; + private static final HashMap GENERIC_ENTITY_META_PROPERTIES = new HashMap() {{ + put(TEST_NAME,TEST_NAME_VALUE); + put(TEST_DESCRIPTION,TEST_DESCRIPTION_VALUE); + }}; + + @MockBean + private GenericAssayService genericAssayService; + + @Autowired + private MockMvc mockMvc; + + private ObjectMapper objectMapper = new ObjectMapper(); + + + @Test + @WithMockUser + public void testGenericAssayMetaGetMolecularProfileId() throws Exception { + List genericAssayMetaItems = createGenericAssayMetaItemsList(); + + Mockito.when(genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genericAssayMetaItems); + + mockMvc.perform(MockMvcRequestBuilders.get("/api/generic-assay-meta/" + PROF_ID) + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].entityType").value(ENTITY_TYPE)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].stableId").value(GENERIC_ASSAY_STABLE_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].entityType").value(ENTITY_TYPE)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].stableId").value(GENERIC_ASSAY_STABLE_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_NAME))) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_NAME_VALUE))) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_DESCRIPTION))) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_DESCRIPTION_VALUE))); + } + + + @Test + @WithMockUser + public void testGenericAssayMetaGetGenericAssayStableId() throws Exception { + List genericAssayMetaSingleItem = createGenericAssayMetaSingleItem(); + + Mockito.when(genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genericAssayMetaSingleItem); + + mockMvc.perform(MockMvcRequestBuilders.get("/api/generic-assay-meta/generic-assay/" + GENERIC_ASSAY_STABLE_ID_2) + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(1))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].entityType").value(ENTITY_TYPE)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].stableId").value(GENERIC_ASSAY_STABLE_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasKey(TEST_NAME))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasValue(TEST_NAME_VALUE))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasKey(TEST_DESCRIPTION))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasValue(TEST_DESCRIPTION_VALUE))); + } + + @Test + @WithMockUser + public void testGenericAssayMetaFetch() throws Exception { + List genericAssayMetaItems = createGenericAssayMetaItemsList(); + List genericAssayStableIds = Arrays.asList(GENERIC_ASSAY_STABLE_ID_1, GENERIC_ASSAY_STABLE_ID_2); + GenericAssayMetaFilter genericAssayMetaFilter = new GenericAssayMetaFilter(); + genericAssayMetaFilter.setGenericAssayStableIds(genericAssayStableIds); + + Mockito.when(genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genericAssayMetaItems); + + mockMvc.perform(MockMvcRequestBuilders.post("/api/generic_assay_meta/fetch").with(csrf()) + .accept(MediaType.APPLICATION_JSON) + .contentType(MediaType.APPLICATION_JSON) + .content(objectMapper.writeValueAsString(genericAssayMetaFilter))) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].entityType").value(ENTITY_TYPE)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].stableId").value(GENERIC_ASSAY_STABLE_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].entityType").value(ENTITY_TYPE)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].stableId").value(GENERIC_ASSAY_STABLE_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_NAME))) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_NAME_VALUE))) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_DESCRIPTION))) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_DESCRIPTION_VALUE))); + } + + private List createGenericAssayMetaSingleItem() { + + List genericAssayMetaItems = new ArrayList<>(); + + GenericAssayMeta item2 = new GenericAssayMeta(ENTITY_TYPE, GENERIC_ASSAY_STABLE_ID_2, GENERIC_ENTITY_META_PROPERTIES); + genericAssayMetaItems.add(item2); + + return genericAssayMetaItems; + } + + private List createGenericAssayMetaItemsList() { + + List genericAssayMetaItems = new ArrayList<>(); + + GenericAssayMeta item1 = new GenericAssayMeta(ENTITY_TYPE, GENERIC_ASSAY_STABLE_ID_1); + genericAssayMetaItems.add(item1); + + GenericAssayMeta item2 = new GenericAssayMeta(ENTITY_TYPE, GENERIC_ASSAY_STABLE_ID_2, GENERIC_ENTITY_META_PROPERTIES); + genericAssayMetaItems.add(item2); + + return genericAssayMetaItems; + } +} \ No newline at end of file diff --git a/web/src/test/java/org/cbioportal/web/GenericAssayDataControllerTest.java b/src/test/java/org/cbioportal/web/GenericAssayDataControllerTest.java similarity index 94% rename from web/src/test/java/org/cbioportal/web/GenericAssayDataControllerTest.java rename to src/test/java/org/cbioportal/web/GenericAssayDataControllerTest.java index be24576b747..ee7fc0d285c 100644 --- a/web/src/test/java/org/cbioportal/web/GenericAssayDataControllerTest.java +++ b/src/test/java/org/cbioportal/web/GenericAssayDataControllerTest.java @@ -4,6 +4,7 @@ import org.cbioportal.model.GenericAssayData; import org.cbioportal.model.meta.GenericAssayMeta; import org.cbioportal.service.GenericAssayService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.GenericAssayDataMultipleStudyFilter; import org.cbioportal.web.parameter.GenericAssayFilter; import org.cbioportal.web.parameter.GenericAssayMetaFilter; @@ -14,6 +15,8 @@ import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.context.annotation.Bean; import org.springframework.context.annotation.Configuration; import org.springframework.http.MediaType; @@ -32,9 +35,8 @@ import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {GenericAssayDataController.class, TestConfig.class}) public class GenericAssayDataControllerTest { private static final String PROF_ID = "test_prof_id"; @@ -60,8 +62,9 @@ public class GenericAssayDataControllerTest { @Autowired private WebApplicationContext wac; - @Autowired + @MockBean private GenericAssayService genericAssayService; + @Autowired private MockMvc mockMvc; private ObjectMapper objectMapper = new ObjectMapper(); @@ -83,7 +86,7 @@ public void testGenericAssayDataFetch() throws Exception { genericAssayDataFilter.setSampleIds(Arrays.asList(SAMPLE_ID)); genericAssayDataFilter.setGenericAssayStableIds(Arrays.asList(GENERIC_ASSAY_STABLE_ID_1, GENERIC_ASSAY_STABLE_ID_2, GENERIC_ASSAY_STABLE_ID_3, GENERIC_ASSAY_STABLE_ID_4)); - mockMvc.perform(MockMvcRequestBuilders.post("/generic_assay_data/" + PROF_ID + "/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/generic_assay_data/" + PROF_ID + "/fetch") .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genericAssayDataFilter))) @@ -109,7 +112,7 @@ public void testGenericAssayDataFetchInMultipleMolecularProfiles() throws Except Mockito.when(genericAssayService.fetchGenericAssayData(Mockito.anyList(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genericAssayDataItems); - mockMvc.perform(MockMvcRequestBuilders.post("/generic_assay_data/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/generic_assay_data/fetch") .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genericAssayDataMultipleStudyFilter))) @@ -131,7 +134,7 @@ public void testGenericAssayDataGet() throws Exception { Mockito.when(genericAssayService.fetchGenericAssayData(Mockito.anyString(), Mockito.anyList(), Mockito.anyList(), Mockito.anyString())).thenReturn(genericAssayDataItems); - mockMvc.perform(MockMvcRequestBuilders.get("/generic-assay-data/" + PROF_ID + "/generic-assay/" + GENERIC_ASSAY_STABLE_ID_1) + mockMvc.perform(MockMvcRequestBuilders.get("/api/generic-assay-data/" + PROF_ID + "/generic-assay/" + GENERIC_ASSAY_STABLE_ID_1) .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) diff --git a/web/src/test/java/org/cbioportal/web/GenesetControllerTest.java b/src/test/java/org/cbioportal/web/GenesetControllerTest.java similarity index 84% rename from web/src/test/java/org/cbioportal/web/GenesetControllerTest.java rename to src/test/java/org/cbioportal/web/GenesetControllerTest.java index b9e5114e1e1..e58da5d8fa0 100644 --- a/web/src/test/java/org/cbioportal/web/GenesetControllerTest.java +++ b/src/test/java/org/cbioportal/web/GenesetControllerTest.java @@ -5,28 +5,25 @@ import org.cbioportal.model.Geneset; import org.cbioportal.service.GenesetService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {GenesetController.class, TestConfig.class}) public class GenesetControllerTest { public static final String GENESET_ID_1 = "geneset_id_1"; @@ -38,34 +35,21 @@ public class GenesetControllerTest { private static final String DESCRIPTION_2 = "description 2"; private static final String REF_LINK_2 = "http://link2"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private GenesetService genesetService; + @Autowired private MockMvc mockMvc; - @Bean - public GenesetService genesetService() { - return Mockito.mock(GenesetService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(genesetService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllGenesets() throws Exception { List genesetList = createGenesetList(); Mockito.when(genesetService.getAllGenesets(Mockito.anyString(), Mockito.anyInt(), Mockito.anyInt())).thenReturn(genesetList); - mockMvc.perform(MockMvcRequestBuilders.get("/genesets") + mockMvc.perform(MockMvcRequestBuilders.get("/api/genesets") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -85,13 +69,14 @@ public void getAllGenesets() throws Exception { } @Test + @WithMockUser public void getGeneset() throws Exception { Geneset geneset = createGenesetList().get(0); Mockito.when(genesetService.getGeneset(Mockito.anyString())).thenReturn(geneset); //test /genesets/{genesetId} - mockMvc.perform(MockMvcRequestBuilders.get("/genesets/test_geneset_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/genesets/test_geneset_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) diff --git a/web/src/test/java/org/cbioportal/web/GenesetCorrelationControllerTest.java b/src/test/java/org/cbioportal/web/GenesetCorrelationControllerTest.java similarity index 81% rename from web/src/test/java/org/cbioportal/web/GenesetCorrelationControllerTest.java rename to src/test/java/org/cbioportal/web/GenesetCorrelationControllerTest.java index 2d3656a0c97..a0bc3244d65 100644 --- a/web/src/test/java/org/cbioportal/web/GenesetCorrelationControllerTest.java +++ b/src/test/java/org/cbioportal/web/GenesetCorrelationControllerTest.java @@ -1,32 +1,31 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import java.util.ArrayList; import java.util.List; - import org.cbioportal.model.GenesetCorrelation; import org.cbioportal.service.GenesetCorrelationService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {GenesetCorrelationController.class, TestConfig.class}) public class GenesetCorrelationControllerTest { private static final String PROF_ID = "test_prof_id"; @@ -41,33 +40,20 @@ public class GenesetCorrelationControllerTest { private static final String ZSCORE_PROF_ID = "zscore_prof_id1"; @Autowired - private WebApplicationContext wac; - - @Autowired - private GenesetCorrelationService genesetCorrelationService; - private MockMvc mockMvc; - @Bean - public GenesetCorrelationService genesetCorrelationService() { - return Mockito.mock(GenesetCorrelationService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(genesetCorrelationService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } + @MockBean + public GenesetCorrelationService genesetCorrelationService; @Test + @WithMockUser public void fetchCorrelatedGenes() throws Exception { List correlationsForGeneset = createGenesetCorrelationList(); Mockito.when(genesetCorrelationService.fetchCorrelatedGenes(Mockito.anyString(), Mockito.anyString(), Mockito.anyDouble())).thenReturn(correlationsForGeneset); - mockMvc.perform(MockMvcRequestBuilders.post("/genesets/" + QUERY_GENESET_ID + "/expression-correlation/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/genesets/" + QUERY_GENESET_ID + "/expression-correlation/fetch").with(csrf()) .param("geneticProfileId", PROF_ID) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) diff --git a/web/src/test/java/org/cbioportal/web/GenesetDataControllerTest.java b/src/test/java/org/cbioportal/web/GenesetDataControllerTest.java similarity index 87% rename from web/src/test/java/org/cbioportal/web/GenesetDataControllerTest.java rename to src/test/java/org/cbioportal/web/GenesetDataControllerTest.java index b47287a62fb..843d3aaa771 100644 --- a/web/src/test/java/org/cbioportal/web/GenesetDataControllerTest.java +++ b/src/test/java/org/cbioportal/web/GenesetDataControllerTest.java @@ -1,36 +1,34 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; import java.util.ArrayList; import java.util.Arrays; import java.util.List; - import org.cbioportal.model.GenesetMolecularData; import org.cbioportal.service.GenesetDataService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.GenesetDataFilterCriteria; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import com.fasterxml.jackson.databind.ObjectMapper; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {GenesetDataController.class, TestConfig.class}) public class GenesetDataControllerTest { private static final String PROF_ID = "test_prof_id"; @@ -41,29 +39,17 @@ public class GenesetDataControllerTest { public static final String GENESET_ID_2 = "geneset_id_2"; private static final String VALUE_2 = "-0.457"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private GenesetDataService genesetDataService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public GenesetDataService genesetDataService() { - return Mockito.mock(GenesetDataService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(genesetDataService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } @Test + @WithMockUser public void fetchGeneticDataItemsWithSampleIds() throws Exception { List genesetDataItems = createGenesetDataItemsList(); @@ -81,7 +67,7 @@ public void fetchGeneticDataItemsWithSampleIds() throws Exception { genesetDataFilterCriteria.setSampleIds(sampleIds); genesetDataFilterCriteria.setGenesetIds(genesetIds); - mockMvc.perform(MockMvcRequestBuilders.post("/genetic-profiles/" + geneticProfileId + "/geneset-genetic-data/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/genetic-profiles/" + geneticProfileId + "/geneset-genetic-data/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genesetDataFilterCriteria))) @@ -99,6 +85,7 @@ public void fetchGeneticDataItemsWithSampleIds() throws Exception { } @Test + @WithMockUser public void fetchGeneticDataItemsWithSampleListId() throws Exception { List genesetDataItems = createGenesetDataItemsList(); genesetDataItems.addAll(createGenesetDataItemsList()); @@ -117,7 +104,7 @@ public void fetchGeneticDataItemsWithSampleListId() throws Exception { genesetDataFilterCriteria.setSampleListId(sampleListId); genesetDataFilterCriteria.setGenesetIds(genesetIds); - mockMvc.perform(MockMvcRequestBuilders.post("/genetic-profiles/" + geneticProfileId + "/geneset-genetic-data/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/genetic-profiles/" + geneticProfileId + "/geneset-genetic-data/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genesetDataFilterCriteria))) diff --git a/web/src/test/java/org/cbioportal/web/GenesetHierarchyControllerTest.java b/src/test/java/org/cbioportal/web/GenesetHierarchyControllerTest.java similarity index 88% rename from web/src/test/java/org/cbioportal/web/GenesetHierarchyControllerTest.java rename to src/test/java/org/cbioportal/web/GenesetHierarchyControllerTest.java index a580a1fb201..e9a951ce15d 100644 --- a/web/src/test/java/org/cbioportal/web/GenesetHierarchyControllerTest.java +++ b/src/test/java/org/cbioportal/web/GenesetHierarchyControllerTest.java @@ -1,67 +1,53 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import java.util.ArrayList; import java.util.Arrays; import java.util.List; - import org.cbioportal.model.Geneset; import org.cbioportal.model.GenesetHierarchyInfo; import org.cbioportal.service.GenesetHierarchyService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {GenesetHierarchyController.class, TestConfig.class}) public class GenesetHierarchyControllerTest { private static final String PROF_ID = "test_prof_id"; public static final String GENESET_ID1 = "geneset_id1"; public static final String GENESET_ID2 = "geneset_id2"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private GenesetHierarchyService genesetHierarchyService; + @Autowired private MockMvc mockMvc; - @Bean - public GenesetHierarchyService genesetHierarchyService() { - return Mockito.mock(GenesetHierarchyService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(genesetHierarchyService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchGenesetHierarchyInfo() throws Exception { List genesetHierarchyInfoList = createGenesetHierarchyInfoList(); Mockito.when(genesetHierarchyService.fetchGenesetHierarchyInfo(Mockito.anyString(), Mockito.anyInt(), Mockito.anyDouble(), Mockito.anyDouble())).thenReturn(genesetHierarchyInfoList); - mockMvc.perform(MockMvcRequestBuilders.post("/geneset-hierarchy/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/geneset-hierarchy/fetch").with(csrf()) .param("geneticProfileId", PROF_ID) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON)) diff --git a/src/test/java/org/cbioportal/web/InfoControllerTest.java b/src/test/java/org/cbioportal/web/InfoControllerTest.java new file mode 100644 index 00000000000..af78e860bb1 --- /dev/null +++ b/src/test/java/org/cbioportal/web/InfoControllerTest.java @@ -0,0 +1,40 @@ +package org.cbioportal.web; + +import org.cbioportal.web.config.TestConfig; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.TestPropertySource; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {InfoController.class, TestConfig.class}) +@TestPropertySource(properties = { + "portal.version=test_portal_version", + "db.version=test_db_version" +}) +public class InfoControllerTest { + + @Autowired + private MockMvc mockMvc; + + @Test + @WithMockUser + public void getInfo() throws Exception { + + mockMvc.perform(MockMvcRequestBuilders.get("/api/info") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$.portalVersion").value("test_portal_version")) + .andExpect(MockMvcResultMatchers.jsonPath("$.dbVersion").value("test_db_version")); + } +} diff --git a/web/src/test/java/org/cbioportal/web/MolecularDataControllerTest.java b/src/test/java/org/cbioportal/web/MolecularDataControllerTest.java similarity index 90% rename from web/src/test/java/org/cbioportal/web/MolecularDataControllerTest.java rename to src/test/java/org/cbioportal/web/MolecularDataControllerTest.java index 1500e9eb0c1..3793079fe80 100644 --- a/web/src/test/java/org/cbioportal/web/MolecularDataControllerTest.java +++ b/src/test/java/org/cbioportal/web/MolecularDataControllerTest.java @@ -1,37 +1,36 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.GeneMolecularData; import org.cbioportal.service.MolecularDataService; +import org.cbioportal.web.config.TestConfig; +import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.MolecularDataFilter; import org.cbioportal.web.parameter.MolecularDataMultipleStudyFilter; -import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {MolecularDataController.class, TestConfig.class}) public class MolecularDataControllerTest { private static final String TEST_MOLECULAR_PROFILE_STABLE_ID_1 = "test_molecular_profile_stable_id_1"; @@ -44,29 +43,16 @@ public class MolecularDataControllerTest { private static final String TEST_VALUE_2 = "2.4"; private static final String TEST_SAMPLE_LIST_ID = "test_sample_list_id"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private MolecularDataService molecularDataService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public MolecularDataService molecularDataService() { - return Mockito.mock(MolecularDataService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(molecularDataService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllMolecularDataInMolecularProfileSummaryProjection() throws Exception { List geneMolecularDataList = createExampleMolecularData(); @@ -75,7 +61,7 @@ public void getAllMolecularDataInMolecularProfileSummaryProjection() throws Exce Mockito.anyString(), Mockito.anyList(), Mockito.anyString())) .thenReturn(geneMolecularDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/molecular-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/molecular-data") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("entrezGeneId", "1") .accept(MediaType.APPLICATION_JSON)) @@ -97,6 +83,7 @@ public void getAllMolecularDataInMolecularProfileSummaryProjection() throws Exce } @Test + @WithMockUser public void getAllMolecularDataInMolecularProfileMetaProjection() throws Exception { List geneMolecularDataList = createExampleMolecularData(); @@ -108,7 +95,7 @@ public void getAllMolecularDataInMolecularProfileMetaProjection() throws Excepti Mockito.when(molecularDataService.getMolecularData(Mockito.anyString(), Mockito.anyString(), Mockito.anyList(), Mockito.anyString())).thenReturn(geneMolecularDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/molecular-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/molecular-data") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("entrezGeneId", "1") .param("projection", "META")) @@ -117,6 +104,7 @@ public void getAllMolecularDataInMolecularProfileMetaProjection() throws Excepti } @Test + @WithMockUser public void fetchAllMolecularDataInMolecularProfileSummaryProjection() throws Exception { List geneMolecularDataList = createExampleMolecularData(); @@ -128,7 +116,7 @@ public void fetchAllMolecularDataInMolecularProfileSummaryProjection() throws Ex MolecularDataFilter molecularDataFilter = createMolecularDataFilter(); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/test_molecular_profile_id/molecular-data/fetch") + .post("/api/molecular-profiles/test_molecular_profile_id/molecular-data/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(molecularDataFilter))) @@ -150,6 +138,7 @@ public void fetchAllMolecularDataInMolecularProfileSummaryProjection() throws Ex } @Test + @WithMockUser public void fetchAllMolecularDataInMolecularProfileMetaProjection() throws Exception { List geneMolecularDataList = createExampleMolecularData(); @@ -164,7 +153,7 @@ public void fetchAllMolecularDataInMolecularProfileMetaProjection() throws Excep MolecularDataFilter molecularDataFilter = createMolecularDataFilter(); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/test_molecular_profile_id/molecular-data/fetch") + .post("/api/molecular-profiles/test_molecular_profile_id/molecular-data/fetch").with(csrf()) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(molecularDataFilter)) .param("projection", "META")) @@ -173,6 +162,7 @@ public void fetchAllMolecularDataInMolecularProfileMetaProjection() throws Excep } @Test + @WithMockUser public void fetchMolecularDataInMultipleMolecularProfiles() throws Exception { List geneMolecularDataList = createExampleMolecularData(); @@ -187,7 +177,7 @@ public void fetchMolecularDataInMultipleMolecularProfiles() throws Exception { molecularDataMultipleStudyFilter.setEntrezGeneIds(Arrays.asList(TEST_ENTREZ_GENE_ID_1, TEST_ENTREZ_GENE_ID_2)); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-data/fetch") + .post("/api/molecular-data/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(molecularDataMultipleStudyFilter))) diff --git a/web/src/test/java/org/cbioportal/web/MolecularProfileControllerTest.java b/src/test/java/org/cbioportal/web/MolecularProfileControllerTest.java similarity index 93% rename from web/src/test/java/org/cbioportal/web/MolecularProfileControllerTest.java rename to src/test/java/org/cbioportal/web/MolecularProfileControllerTest.java index 59bf4435b4e..b999ec5ebe8 100644 --- a/web/src/test/java/org/cbioportal/web/MolecularProfileControllerTest.java +++ b/src/test/java/org/cbioportal/web/MolecularProfileControllerTest.java @@ -1,38 +1,38 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.MolecularProfile; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.MolecularProfileService; import org.cbioportal.service.exception.MolecularProfileNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.MolecularProfileFilter; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; -import com.fasterxml.jackson.databind.ObjectMapper; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {MolecularProfileController.class, TestConfig.class}) public class MolecularProfileControllerTest { private static final int TEST_MOLECULAR_PROFILE_ID_1 = 1; @@ -68,29 +68,16 @@ public class MolecularProfileControllerTest { private static final String TEST_STUDY_SORTORDER_2 = "DESC"; private static final String TEST_GENERIC_ASSAY_TYPE_2 = "test_generic_assay_type_2"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private MolecularProfileService molecularProfileService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public MolecularProfileService molecularProfileService() { - return Mockito.mock(MolecularProfileService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(molecularProfileService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllMolecularProfilesDefaultProjection() throws Exception { List molecularProfileList = createExampleMolecularProfiles(); @@ -98,7 +85,7 @@ public void getAllMolecularProfilesDefaultProjection() throws Exception { Mockito.when(molecularProfileService.getAllMolecularProfiles(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(molecularProfileList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -134,6 +121,7 @@ public void getAllMolecularProfilesDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllMolecularProfilesMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -141,19 +129,20 @@ public void getAllMolecularProfilesMetaProjection() throws Exception { Mockito.when(molecularProfileService.getMetaMolecularProfiles()).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getMolecularProfileNotFound() throws Exception { Mockito.when(molecularProfileService.getMolecularProfile(Mockito.anyString())).thenThrow( new MolecularProfileNotFoundException("test_molecular_profile_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message") @@ -161,6 +150,7 @@ public void getMolecularProfileNotFound() throws Exception { } @Test + @WithMockUser public void getMolecularProfile() throws Exception { MolecularProfile molecularProfile = new MolecularProfile(); @@ -186,7 +176,7 @@ public void getMolecularProfile() throws Exception { Mockito.when(molecularProfileService.getMolecularProfile(Mockito.anyString())).thenReturn(molecularProfile); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -213,6 +203,7 @@ public void getMolecularProfile() throws Exception { } @Test + @WithMockUser public void getAllMolecularProfilesInStudyDefaultProjection() throws Exception { List molecularProfileList = createExampleMolecularProfiles(); @@ -221,7 +212,7 @@ public void getAllMolecularProfilesInStudyDefaultProjection() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(molecularProfileList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/molecular-profiles") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/molecular-profiles") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -255,6 +246,7 @@ public void getAllMolecularProfilesInStudyDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllMolecularProfilesInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -262,13 +254,14 @@ public void getAllMolecularProfilesInStudyMetaProjection() throws Exception { Mockito.when(molecularProfileService.getMetaMolecularProfilesInStudy(Mockito.anyString())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/molecular-profiles") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/molecular-profiles") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void fetchMolecularProfiles() throws Exception { List molecularProfileList = createExampleMolecularProfiles(); @@ -280,7 +273,7 @@ public void fetchMolecularProfiles() throws Exception { molecularProfileFilter.setStudyIds(Arrays.asList(TEST_STUDY_IDENTIFIER_1, TEST_STUDY_IDENTIFIER_2)); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/fetch") + .post("/api/molecular-profiles/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(molecularProfileFilter))) diff --git a/web/src/test/java/org/cbioportal/web/MrnaPercentileControllerTest.java b/src/test/java/org/cbioportal/web/MrnaPercentileControllerTest.java similarity index 83% rename from web/src/test/java/org/cbioportal/web/MrnaPercentileControllerTest.java rename to src/test/java/org/cbioportal/web/MrnaPercentileControllerTest.java index b2773e43210..1056c2d0336 100644 --- a/web/src/test/java/org/cbioportal/web/MrnaPercentileControllerTest.java +++ b/src/test/java/org/cbioportal/web/MrnaPercentileControllerTest.java @@ -1,34 +1,33 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.MrnaPercentile; import org.cbioportal.service.MrnaPercentileService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {MrnaPercentileController.class, TestConfig.class}) public class MrnaPercentileControllerTest { private static final String TEST_MOLECULAR_PROFILE_STABLE_ID = "test_molecular_profile_stable_id_1"; @@ -40,29 +39,16 @@ public class MrnaPercentileControllerTest { private static final BigDecimal TEST_Z_SCORE_2 = new BigDecimal(0.2); private static final BigDecimal TEST_PERCENTILE_2 = new BigDecimal(80.01); - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private MrnaPercentileService mrnaPercentileService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public MrnaPercentileService mrnaPercentileService() { - return Mockito.mock(MrnaPercentileService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(mrnaPercentileService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchMrnaPercentile() throws Exception { List mrnaPercentileList = new ArrayList<>(); @@ -89,7 +75,7 @@ public void fetchMrnaPercentile() throws Exception { entrezGeneIds.add(TEST_ENTREZ_GENE_ID_2); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/test_molecular_profile_id/mrna-percentile/fetch") + .post("/api/molecular-profiles/test_molecular_profile_id/mrna-percentile/fetch").with(csrf()) .param("sampleId", TEST_SAMPLE_STABLE_ID) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) diff --git a/web/src/test/java/org/cbioportal/web/MutationControllerTest.java b/src/test/java/org/cbioportal/web/MutationControllerTest.java similarity index 97% rename from web/src/test/java/org/cbioportal/web/MutationControllerTest.java rename to src/test/java/org/cbioportal/web/MutationControllerTest.java index 7f9018d0e85..9485d91ad70 100644 --- a/web/src/test/java/org/cbioportal/web/MutationControllerTest.java +++ b/src/test/java/org/cbioportal/web/MutationControllerTest.java @@ -1,42 +1,42 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.AlleleSpecificCopyNumber; import org.cbioportal.model.Gene; import org.cbioportal.model.Mutation; import org.cbioportal.model.MutationCountByPosition; import org.cbioportal.model.meta.MutationMeta; import org.cbioportal.service.MutationService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.MutationFilter; import org.cbioportal.web.parameter.MutationMultipleStudyFilter; import org.cbioportal.web.parameter.MutationPositionIdentifier; import org.cbioportal.web.parameter.SampleMolecularIdentifier; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {MutationController.class, MutationCountController.class, TestConfig.class}) public class MutationControllerTest { private static final String TEST_MOLECULAR_PROFILE_STABLE_ID_1 = "test_molecular_profile_stable_id_1"; @@ -125,29 +125,16 @@ public class MutationControllerTest { private static final int TEST_TOTAL_COPY_NUMBER_2 = 2; private static final String NAME_SPACE_COLUMNS = "{\"columnName\":{\"fieldName\":\"fieldValue\"}}"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private MutationService mutationService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public MutationService mutationService() { - return Mockito.mock(MutationService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(mutationService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getMutationsInMolecularProfileBySampleListIdDefaultProjection() throws Exception { List mutationList = createExampleMutations(); @@ -156,7 +143,7 @@ public void getMutationsInMolecularProfileBySampleListIdDefaultProjection() thro Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(mutationList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/mutations") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/mutations") .param("sampleListId", TEST_SAMPLE_LIST_ID) .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -225,6 +212,7 @@ public void getMutationsInMolecularProfileBySampleListIdDefaultProjection() thro } @Test + @WithMockUser public void getMutationsInMolecularProfileBySampleListIdDetailedProjection() throws Exception { List mutationList = createExampleMutationsWithGeneAndAlleleSpecificCopyNumber(); @@ -233,7 +221,7 @@ public void getMutationsInMolecularProfileBySampleListIdDetailedProjection() thr Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(mutationList); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/mutations") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/mutations") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("projection", "DETAILED") .accept(MediaType.APPLICATION_JSON)) @@ -320,6 +308,7 @@ public void getMutationsInMolecularProfileBySampleListIdDetailedProjection() thr } @Test + @WithMockUser public void getMutationsInMolecularProfileBySampleListIdMetaProjection() throws Exception { MutationMeta mutationMeta = new MutationMeta(); @@ -329,7 +318,7 @@ public void getMutationsInMolecularProfileBySampleListIdMetaProjection() throws Mockito.when(mutationService.getMetaMutationsInMolecularProfileBySampleListId(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(mutationMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/molecular-profiles/test_molecular_profile_id/mutations") + mockMvc.perform(MockMvcRequestBuilders.get("/api/molecular-profiles/test_molecular_profile_id/mutations") .param("sampleListId", TEST_SAMPLE_LIST_ID) .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -338,6 +327,7 @@ public void getMutationsInMolecularProfileBySampleListIdMetaProjection() throws } @Test + @WithMockUser public void fetchMutationsInMultipleMolecularProfiles() throws Exception { List mutationList = createExampleMutations(); @@ -358,7 +348,7 @@ public void fetchMutationsInMultipleMolecularProfiles() throws Exception { MutationMultipleStudyFilter mutationMultipleStudyFilter = new MutationMultipleStudyFilter(); mutationMultipleStudyFilter.setSampleMolecularIdentifiers(sampleMolecularIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/mutations/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/mutations/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(mutationMultipleStudyFilter))) @@ -426,6 +416,7 @@ public void fetchMutationsInMultipleMolecularProfiles() throws Exception { } @Test + @WithMockUser public void fetchMutationsInMolecularProfileDefaultProjection() throws Exception { List mutationList = createExampleMutations(); @@ -441,7 +432,7 @@ public void fetchMutationsInMolecularProfileDefaultProjection() throws Exception MutationFilter mutationFilter = new MutationFilter(); mutationFilter.setSampleIds(sampleIds); - mockMvc.perform(MockMvcRequestBuilders.post("/molecular-profiles/test_molecular_profile_id/mutations/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/molecular-profiles/test_molecular_profile_id/mutations/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(mutationFilter))) @@ -509,6 +500,7 @@ public void fetchMutationsInMolecularProfileDefaultProjection() throws Exception } @Test + @WithMockUser public void fetchMutationsInMolecularProfileDetailedProjection() throws Exception { List mutationList = createExampleMutationsWithGeneAndAlleleSpecificCopyNumber(); @@ -524,7 +516,7 @@ public void fetchMutationsInMolecularProfileDetailedProjection() throws Exceptio MutationFilter mutationFilter = new MutationFilter(); mutationFilter.setSampleIds(sampleIds); - mockMvc.perform(MockMvcRequestBuilders.post("/molecular-profiles/test_molecular_profile_id/mutations/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/molecular-profiles/test_molecular_profile_id/mutations/fetch").with(csrf()) .param("projection", "DETAILED") .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) @@ -613,6 +605,7 @@ public void fetchMutationsInMolecularProfileDetailedProjection() throws Exceptio } @Test + @WithMockUser public void fetchMutationsInMolecularProfileMetaProjection() throws Exception { MutationMeta mutationMeta = new MutationMeta(); @@ -628,7 +621,7 @@ public void fetchMutationsInMolecularProfileMetaProjection() throws Exception { MutationFilter mutationFilter = new MutationFilter(); mutationFilter.setSampleIds(sampleIds); - mockMvc.perform(MockMvcRequestBuilders.post("/molecular-profiles/test_molecular_profile_id/mutations/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/molecular-profiles/test_molecular_profile_id/mutations/fetch").with(csrf()) .param("projection", "META") .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(mutationFilter))) @@ -638,6 +631,7 @@ public void fetchMutationsInMolecularProfileMetaProjection() throws Exception { } @Test + @WithMockUser public void fetchMutationCountsByPosition() throws Exception { List mutationCountByPositionList = new ArrayList<>(); @@ -670,7 +664,7 @@ public void fetchMutationCountsByPosition() throws Exception { mutationPositionIdentifier2.setProteinPosEnd(TEST_MUTATION_PROTEIN_POS_END_2); mutationPositionIdentifiers.add(mutationPositionIdentifier2); - mockMvc.perform(MockMvcRequestBuilders.post("/mutation-counts-by-position/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/mutation-counts-by-position/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(mutationPositionIdentifiers))) diff --git a/src/test/java/org/cbioportal/web/MutationCountControllerTest.java b/src/test/java/org/cbioportal/web/MutationCountControllerTest.java new file mode 100644 index 00000000000..26607dd2827 --- /dev/null +++ b/src/test/java/org/cbioportal/web/MutationCountControllerTest.java @@ -0,0 +1,101 @@ +package org.cbioportal.web; + +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; +import org.cbioportal.model.MutationCountByPosition; +import org.cbioportal.service.MutationService; +import org.cbioportal.web.config.TestConfig; +import org.cbioportal.web.parameter.MutationPositionIdentifier; +import org.hamcrest.Matchers; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mockito; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {MutationCountController.class, TestConfig.class}) +public class MutationCountControllerTest { + + private static final int TEST_ENTREZ_GENE_ID_1 = 1; + private static final int TEST_ONCOTATOR_PROTEIN_POS_START_1 = 1; + private static final int TEST_ONCOTATOR_PROTEIN_POS_END_1 = 1; + private static final int TEST_ENTREZ_GENE_ID_2 = 2; + private static final int TEST_ONCOTATOR_PROTEIN_POS_START_2 = 2; + private static final int TEST_ONCOTATOR_PROTEIN_POS_END_2 = 2; + private static final int TEST_MUTATION_COUNT_1 = 100; + private static final int TEST_MUTATION_COUNT_2 = 200; + + @MockBean + private MutationService mutationService; + + private ObjectMapper objectMapper = new ObjectMapper(); + + @Autowired + private MockMvc mockMvc; + + @Test + @WithMockUser + public void fetchMutationCountsByPosition() throws Exception { + + List mutationCountByPositionList = new ArrayList<>(); + MutationCountByPosition mutationCountByPosition1 = new MutationCountByPosition(); + mutationCountByPosition1.setEntrezGeneId(TEST_ENTREZ_GENE_ID_1); + mutationCountByPosition1.setProteinPosStart(TEST_ONCOTATOR_PROTEIN_POS_START_1); + mutationCountByPosition1.setProteinPosEnd(TEST_ONCOTATOR_PROTEIN_POS_END_1); + mutationCountByPosition1.setCount(TEST_MUTATION_COUNT_1); + mutationCountByPositionList.add(mutationCountByPosition1); + MutationCountByPosition mutationCountByPosition2 = new MutationCountByPosition(); + mutationCountByPosition2.setEntrezGeneId(TEST_ENTREZ_GENE_ID_2); + mutationCountByPosition2.setProteinPosStart(TEST_ONCOTATOR_PROTEIN_POS_START_2); + mutationCountByPosition2.setProteinPosEnd(TEST_ONCOTATOR_PROTEIN_POS_END_2); + mutationCountByPosition2.setCount(TEST_MUTATION_COUNT_2); + mutationCountByPositionList.add(mutationCountByPosition2); + + Mockito.when(mutationService.fetchMutationCountsByPosition(Mockito.anyList(), + Mockito.anyList(), Mockito.anyList())) + .thenReturn(mutationCountByPositionList); + + List mutationPositionIdentifiers = new ArrayList<>(); + MutationPositionIdentifier mutationPositionIdentifier1 = new MutationPositionIdentifier(); + mutationPositionIdentifier1.setEntrezGeneId(TEST_ENTREZ_GENE_ID_1); + mutationPositionIdentifier1.setProteinPosStart(TEST_ONCOTATOR_PROTEIN_POS_START_1); + mutationPositionIdentifier1.setProteinPosEnd(TEST_ONCOTATOR_PROTEIN_POS_END_1); + mutationPositionIdentifiers.add(mutationPositionIdentifier1); + MutationPositionIdentifier mutationPositionIdentifier2 = new MutationPositionIdentifier(); + mutationPositionIdentifier2.setEntrezGeneId(TEST_ENTREZ_GENE_ID_2); + mutationPositionIdentifier2.setProteinPosStart(TEST_ONCOTATOR_PROTEIN_POS_START_2); + mutationPositionIdentifier2.setProteinPosEnd(TEST_ONCOTATOR_PROTEIN_POS_END_2); + mutationPositionIdentifiers.add(mutationPositionIdentifier2); + + mockMvc.perform(MockMvcRequestBuilders.post("/api/mutation-counts-by-position/fetch").with(csrf()) + .accept(MediaType.APPLICATION_JSON) + .contentType(MediaType.APPLICATION_JSON) + .content(objectMapper.writeValueAsString(mutationPositionIdentifiers))) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].entrezGeneId").value(TEST_ENTREZ_GENE_ID_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].proteinPosStart").value(TEST_ONCOTATOR_PROTEIN_POS_START_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].proteinPosEnd").value(TEST_ONCOTATOR_PROTEIN_POS_END_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[0].count").value(TEST_MUTATION_COUNT_1)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].entrezGeneId").value(TEST_ENTREZ_GENE_ID_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].proteinPosStart").value(TEST_ONCOTATOR_PROTEIN_POS_START_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].proteinPosEnd").value(TEST_ONCOTATOR_PROTEIN_POS_END_2)) + .andExpect(MockMvcResultMatchers.jsonPath("$[1].count").value(TEST_MUTATION_COUNT_2)); + } + +} diff --git a/web/src/test/java/org/cbioportal/web/MutationSpectrumControllerTest.java b/src/test/java/org/cbioportal/web/MutationSpectrumControllerTest.java similarity index 86% rename from web/src/test/java/org/cbioportal/web/MutationSpectrumControllerTest.java rename to src/test/java/org/cbioportal/web/MutationSpectrumControllerTest.java index 94f339ef359..84b562c6a4e 100644 --- a/web/src/test/java/org/cbioportal/web/MutationSpectrumControllerTest.java +++ b/src/test/java/org/cbioportal/web/MutationSpectrumControllerTest.java @@ -1,35 +1,34 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import org.cbioportal.model.MutationSpectrum; import org.cbioportal.service.MutationSpectrumService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.MutationSpectrumFilter; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {MutationSpectrumController.class, TestConfig.class}) public class MutationSpectrumControllerTest { private static final String TEST_MOLECULAR_PROFILE_ID = "test_molecular_profile_id"; @@ -48,29 +47,16 @@ public class MutationSpectrumControllerTest { private static final int TEST_T_TO_C_2 = 1; private static final int TEST_T_TO_G_2 = 2; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private MutationSpectrumService mutationSpectrumService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public MutationSpectrumService mutationSpectrumService() { - return Mockito.mock(MutationSpectrumService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(mutationSpectrumService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchMutationSpectrums() throws Exception { List mutationSpectrumList = new ArrayList<>(); @@ -102,7 +88,7 @@ public void fetchMutationSpectrums() throws Exception { mutationSpectrumFilter.setSampleIds(Arrays.asList(TEST_SAMPLE_ID_1, TEST_SAMPLE_ID_2)); mockMvc.perform(MockMvcRequestBuilders.post( - "/molecular-profiles/test_molecular_profile_id/mutation-spectrums/fetch") + "/api/molecular-profiles/test_molecular_profile_id/mutation-spectrums/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(mutationSpectrumFilter))) diff --git a/web/src/test/java/org/cbioportal/web/PatientControllerTest.java b/src/test/java/org/cbioportal/web/PatientControllerTest.java similarity index 90% rename from web/src/test/java/org/cbioportal/web/PatientControllerTest.java rename to src/test/java/org/cbioportal/web/PatientControllerTest.java index b5cb3f5b126..906e8df119e 100644 --- a/web/src/test/java/org/cbioportal/web/PatientControllerTest.java +++ b/src/test/java/org/cbioportal/web/PatientControllerTest.java @@ -1,39 +1,38 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.Patient; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.PatientService; import org.cbioportal.service.exception.PatientNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.PatientFilter; import org.cbioportal.web.parameter.PatientIdentifier; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {PatientController.class, TestConfig.class}) public class PatientControllerTest { private static final int TEST_INTERNAL_ID_1 = 1; @@ -49,29 +48,16 @@ public class PatientControllerTest { private static final String TEST_SHORT_NAME_1 = "test_short_name_1"; private static final String TEST_DESCRIPTION_1 = "test_description_1"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private PatientService patientService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public PatientService patientService() { - return Mockito.mock(PatientService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(patientService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllPatientsDefaultProjection() throws Exception { List patientList = createExamplePatients(); @@ -79,7 +65,7 @@ public void getAllPatientsDefaultProjection() throws Exception { Mockito.when(patientService.getAllPatients(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(patientList); - mockMvc.perform(MockMvcRequestBuilders.get("/patients") + mockMvc.perform(MockMvcRequestBuilders.get("/api/patients") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -97,6 +83,7 @@ public void getAllPatientsDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllPatientsMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -104,13 +91,14 @@ public void getAllPatientsMetaProjection() throws Exception { Mockito.when(patientService.getMetaPatients(Mockito.any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/patients") + mockMvc.perform(MockMvcRequestBuilders.get("/api/patients") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getAllPatientsInStudyDefaultProjection() throws Exception { List patientList = createExamplePatients(); @@ -118,7 +106,7 @@ public void getAllPatientsInStudyDefaultProjection() throws Exception { Mockito.when(patientService.getAllPatientsInStudy(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(patientList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -136,6 +124,7 @@ public void getAllPatientsInStudyDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllPatientsInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -143,19 +132,20 @@ public void getAllPatientsInStudyMetaProjection() throws Exception { Mockito.when(patientService.getMetaPatientsInStudy(Mockito.anyString())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getPatientInStudyNotFound() throws Exception { Mockito.when(patientService.getPatientInStudy(Mockito.anyString(), Mockito.anyString())).thenThrow( new PatientNotFoundException("test_study_id", "test_patient_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message") @@ -163,6 +153,7 @@ public void getPatientInStudyNotFound() throws Exception { } @Test + @WithMockUser public void getPatientInStudy() throws Exception { Patient patient = new Patient(); @@ -180,7 +171,7 @@ public void getPatientInStudy() throws Exception { Mockito.when(patientService.getPatientInStudy(Mockito.anyString(), Mockito.anyString())).thenReturn(patient); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -191,6 +182,7 @@ public void getPatientInStudy() throws Exception { } @Test + @WithMockUser public void fetchPatientsDefaultProjection() throws Exception { List patientList = createExamplePatients(); @@ -210,7 +202,7 @@ public void fetchPatientsDefaultProjection() throws Exception { patientIdentifiers.add(patientIdentifier2); patientFilter.setPatientIdentifiers(patientIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/patients/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/patients/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(patientFilter))) @@ -230,6 +222,7 @@ public void fetchPatientsDefaultProjection() throws Exception { } @Test + @WithMockUser public void fetchPatientsByUniquePatientKeysDefaultProjection() throws Exception { List patientList = createExamplePatients(); @@ -243,7 +236,7 @@ public void fetchPatientsByUniquePatientKeysDefaultProjection() throws Exception uniquePatientKeys.add("dGVzdF9zdGFibGVfaWRfMjp0ZXN0X3N0dWR5XzI"); patientFilter.setUniquePatientKeys(uniquePatientKeys); - mockMvc.perform(MockMvcRequestBuilders.post("/patients/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/patients/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(patientFilter))) @@ -263,6 +256,7 @@ public void fetchPatientsByUniquePatientKeysDefaultProjection() throws Exception } @Test + @WithMockUser public void fetchPatientsMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -283,7 +277,7 @@ public void fetchPatientsMetaProjection() throws Exception { patientIdentifiers.add(patientIdentifier2); patientFilter.setPatientIdentifiers(patientIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/patients/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/patients/fetch").with(csrf()) .param("projection", "META") .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(patientFilter))) diff --git a/web/src/test/java/org/cbioportal/web/ReferenceGenomeGeneControllerTest.java b/src/test/java/org/cbioportal/web/ReferenceGenomeGeneControllerTest.java similarity index 85% rename from web/src/test/java/org/cbioportal/web/ReferenceGenomeGeneControllerTest.java rename to src/test/java/org/cbioportal/web/ReferenceGenomeGeneControllerTest.java index 229b4e9722c..958f4643ee4 100644 --- a/web/src/test/java/org/cbioportal/web/ReferenceGenomeGeneControllerTest.java +++ b/src/test/java/org/cbioportal/web/ReferenceGenomeGeneControllerTest.java @@ -1,37 +1,35 @@ package org.cbioportal.web; +import static org.mockito.Mockito.times; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; import org.cbioportal.model.ReferenceGenomeGene; import org.cbioportal.service.GeneMemoizerService; import org.cbioportal.service.ReferenceGenomeGeneService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.List; - -import static org.mockito.Mockito.times; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {ReferenceGenomeGeneController.class, TestConfig.class}) public class ReferenceGenomeGeneControllerTest { public static final String CYTOBAND_1 = "cytoband_1"; @@ -52,43 +50,25 @@ public class ReferenceGenomeGeneControllerTest { gene.setChromosome(CHROMOSOME_1); } - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private ReferenceGenomeGeneService referenceGenomeGeneService; - @Autowired + @MockBean private GeneMemoizerService geneMemoizerService; - + private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - - @Bean - public ReferenceGenomeGeneService referenceGenomeGeneService() { - return Mockito.mock(ReferenceGenomeGeneService.class); - } - - @Bean - public GeneMemoizerService geneMemoizerService() { - return Mockito.mock(GeneMemoizerService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(referenceGenomeGeneService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } @Test + @WithMockUser public void getAllReferenceGenesFromCache() throws Exception { Mockito.when(geneMemoizerService.fetchGenes(Mockito.anyString())).thenReturn(Collections.singletonList(gene)); Mockito.when(referenceGenomeGeneService.fetchAllReferenceGenomeGenes(Mockito.anyString())) .thenReturn(Collections.singletonList(gene)); - mockMvc.perform(MockMvcRequestBuilders.get("/reference-genome-genes/hg19") + mockMvc.perform(MockMvcRequestBuilders.get("/api/reference-genome-genes/hg19") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -105,12 +85,13 @@ public void getAllReferenceGenesFromCache() throws Exception { } @Test + @WithMockUser public void getAllReferenceGenesNoCache() throws Exception { Mockito.when(geneMemoizerService.fetchGenes(Mockito.anyString())).thenReturn(null); Mockito.when(referenceGenomeGeneService.fetchAllReferenceGenomeGenes(Mockito.anyString())) .thenReturn(Collections.singletonList(gene)); - mockMvc.perform(MockMvcRequestBuilders.get("/reference-genome-genes/hg19") + mockMvc.perform(MockMvcRequestBuilders.get("/api/reference-genome-genes/hg19") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -126,10 +107,11 @@ public void getAllReferenceGenesNoCache() throws Exception { } @Test + @WithMockUser public void getGene() throws Exception { Mockito.when(referenceGenomeGeneService.getReferenceGenomeGene(Mockito.anyInt(), Mockito.anyString())).thenReturn(gene); - mockMvc.perform(MockMvcRequestBuilders.get("/reference-genome-genes/hg19/1") + mockMvc.perform(MockMvcRequestBuilders.get("/api/reference-genome-genes/hg19/1") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -141,6 +123,7 @@ public void getGene() throws Exception { @Test + @WithMockUser public void fetchGenesDefaultProjection() throws Exception { List geneList = createGeneList(); @@ -152,7 +135,7 @@ public void fetchGenesDefaultProjection() throws Exception { geneIds.add(Integer.toString(ENTREZ_GENE_ID_1)); geneIds.add(Integer.toString(ENTREZ_GENE_ID_2)); - mockMvc.perform(MockMvcRequestBuilders.post("/reference-genome-genes/hg19/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/reference-genome-genes/hg19/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(geneIds))) diff --git a/web/src/test/java/org/cbioportal/web/ResourceDataControllerTest.java b/src/test/java/org/cbioportal/web/ResourceDataControllerTest.java similarity index 83% rename from web/src/test/java/org/cbioportal/web/ResourceDataControllerTest.java rename to src/test/java/org/cbioportal/web/ResourceDataControllerTest.java index 624e168752e..c5fb2af22a2 100644 --- a/web/src/test/java/org/cbioportal/web/ResourceDataControllerTest.java +++ b/src/test/java/org/cbioportal/web/ResourceDataControllerTest.java @@ -1,59 +1,41 @@ package org.cbioportal.web; +import com.fasterxml.jackson.databind.ObjectMapper; import java.util.Arrays; import java.util.List; - import org.cbioportal.model.ResourceData; import org.cbioportal.service.ResourceDataService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import com.fasterxml.jackson.databind.ObjectMapper; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {ResourceDataController.class, TestConfig.class}) public class ResourceDataControllerTest { - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private ResourceDataService resourceDataService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public ResourceDataService resourceDataService() { - return Mockito.mock(ResourceDataService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(resourceDataService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllResourceDataOfSampleInStudy() throws Exception { String resourceDatasJson = "[" + @@ -73,7 +55,7 @@ public void getAllResourceDataOfSampleInStudy() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(resourceDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples/test_sample_id/resource-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples/test_sample_id/resource-data") .accept(MediaType.APPLICATION_JSON)).andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(1))) @@ -85,6 +67,7 @@ public void getAllResourceDataOfSampleInStudy() throws Exception { } @Test + @WithMockUser public void getAllResourceDataOfPatientInStudy() throws Exception { String resourceDatasJson = "[" + @@ -103,7 +86,7 @@ public void getAllResourceDataOfPatientInStudy() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(resourceDataList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_sample_id/resource-data") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_sample_id/resource-data") .accept(MediaType.APPLICATION_JSON)).andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(1))) @@ -114,6 +97,7 @@ public void getAllResourceDataOfPatientInStudy() throws Exception { } @Test + @WithMockUser public void getAllClinicalDataInStudy() throws Exception { String resourceDatasJson = "[" + @@ -132,7 +116,7 @@ public void getAllClinicalDataInStudy() throws Exception { .thenReturn(resourceDataList); mockMvc.perform( - MockMvcRequestBuilders.get("/studies/test_study_id/resource-data").accept(MediaType.APPLICATION_JSON)) + MockMvcRequestBuilders.get("/api/studies/test_study_id/resource-data").accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(1))) diff --git a/web/src/test/java/org/cbioportal/web/ResourceDefinitionControllerTest.java b/src/test/java/org/cbioportal/web/ResourceDefinitionControllerTest.java similarity index 84% rename from web/src/test/java/org/cbioportal/web/ResourceDefinitionControllerTest.java rename to src/test/java/org/cbioportal/web/ResourceDefinitionControllerTest.java index 3a17cb99783..d76045645d2 100644 --- a/web/src/test/java/org/cbioportal/web/ResourceDefinitionControllerTest.java +++ b/src/test/java/org/cbioportal/web/ResourceDefinitionControllerTest.java @@ -7,55 +7,39 @@ import org.cbioportal.model.ResourceDefinition; import org.cbioportal.service.ResourceDefinitionService; +import org.cbioportal.web.config.TestConfig; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; import com.fasterxml.jackson.databind.ObjectMapper; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {ResourceDefinitionController.class, TestConfig.class}) public class ResourceDefinitionControllerTest { - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private ResourceDefinitionService resourceDefinitionService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public ResourceDefinitionService resourceDefinitionService() { - return Mockito.mock(ResourceDefinitionService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(resourceDefinitionService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllResourceDefinitionsInStudy() throws Exception { String resourceDefinitionsJson = "[" + @@ -95,7 +79,7 @@ public void getAllResourceDefinitionsInStudy() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(resourceDefinitions); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/resource-definitions") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/resource-definitions") .accept(MediaType.APPLICATION_JSON)).andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) .andExpect(status().isOk()).andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(3))) @@ -110,6 +94,7 @@ public void getAllResourceDefinitionsInStudy() throws Exception { } @Test + @WithMockUser public void getResourceDefinitionInStudy() throws Exception { String resourceDefinition = "{" + @@ -127,7 +112,7 @@ public void getResourceDefinitionInStudy() throws Exception { Mockito.when(resourceDefinitionService.getResourceDefinition(Mockito.anyString(), Mockito.anyString())) .thenReturn(resourceDefinitions); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/resource-definitions/PATHOLOGY_SLIDE") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/resource-definitions/PATHOLOGY_SLIDE") .accept(MediaType.APPLICATION_JSON)).andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) .andExpect(status().isOk()) diff --git a/web/src/test/java/org/cbioportal/web/SampleControllerTest.java b/src/test/java/org/cbioportal/web/SampleControllerTest.java similarity index 91% rename from web/src/test/java/org/cbioportal/web/SampleControllerTest.java rename to src/test/java/org/cbioportal/web/SampleControllerTest.java index 9c1d64670cd..7756f33acdf 100644 --- a/web/src/test/java/org/cbioportal/web/SampleControllerTest.java +++ b/src/test/java/org/cbioportal/web/SampleControllerTest.java @@ -1,37 +1,39 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.Sample; import org.cbioportal.model.meta.BaseMeta; +import org.cbioportal.service.SampleListService; import org.cbioportal.service.SampleService; +import org.cbioportal.service.StudyService; import org.cbioportal.service.exception.SampleNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.cbioportal.web.parameter.SampleFilter; import org.cbioportal.web.parameter.SampleIdentifier; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {SampleController.class, TestConfig.class}) public class SampleControllerTest { private static final int TEST_INTERNAL_ID_1 = 1; @@ -44,24 +46,22 @@ public class SampleControllerTest { private static final int TEST_PATIENT_ID_2 = 2; private static final String TEST_PATIENT_STABLE_ID_2 = "test_patient_stable_id_2"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private SampleService sampleService; + + @MockBean + private SampleListService sampleListService; + + @MockBean + private StudyService studyService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Before - public void setUp() throws Exception { - - Mockito.reset(sampleService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllSamplesInStudyDefaultProjection() throws Exception { List sampleList = createExampleSamples(); @@ -69,7 +69,7 @@ public void getAllSamplesInStudyDefaultProjection() throws Exception { Mockito.when(sampleService.getAllSamplesInStudy(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(sampleList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -93,6 +93,7 @@ public void getAllSamplesInStudyDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllSamplesInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -100,19 +101,20 @@ public void getAllSamplesInStudyMetaProjection() throws Exception { Mockito.when(sampleService.getMetaSamplesInStudy(Mockito.anyString())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getSampleInStudyNotFound() throws Exception { Mockito.when(sampleService.getSampleInStudy(Mockito.anyString(), Mockito.anyString())).thenThrow( new SampleNotFoundException("test_study_id", "test_sample_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples/test_sample_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples/test_sample_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message") @@ -120,6 +122,7 @@ public void getSampleInStudyNotFound() throws Exception { } @Test + @WithMockUser public void getAllSamples() throws Exception { List samples = createExampleSamples(); @@ -130,7 +133,7 @@ public void getAllSamples() throws Exception { )).thenReturn(samples); mockMvc.perform( - MockMvcRequestBuilders.get("/samples").accept(MediaType.APPLICATION_JSON)) + MockMvcRequestBuilders.get("/api/samples").accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) @@ -153,6 +156,7 @@ public void getAllSamples() throws Exception { } @Test + @WithMockUser public void getSampleInStudy() throws Exception { Sample sample = new Sample(); @@ -165,7 +169,7 @@ public void getSampleInStudy() throws Exception { Mockito.when(sampleService.getSampleInStudy(Mockito.anyString(), Mockito.anyString())).thenReturn(sample); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/samples/test_sample_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/samples/test_sample_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -180,6 +184,7 @@ public void getSampleInStudy() throws Exception { } @Test + @WithMockUser public void getAllSamplesOfPatientInStudyDefaultProjection() throws Exception { List sampleList = createExampleSamples(); @@ -188,7 +193,7 @@ public void getAllSamplesOfPatientInStudyDefaultProjection() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(sampleList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id/samples") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id/samples") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -212,6 +217,7 @@ public void getAllSamplesOfPatientInStudyDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllSamplesOfPatientInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -220,13 +226,14 @@ public void getAllSamplesOfPatientInStudyMetaProjection() throws Exception { Mockito.when(sampleService.getMetaSamplesOfPatientInStudy(Mockito.anyString(), Mockito.anyString())) .thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/patients/test_patient_id/samples") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/patients/test_patient_id/samples") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void fetchSamplesDefaultProjection() throws Exception { List sampleList = createExampleSamples(); @@ -246,7 +253,7 @@ public void fetchSamplesDefaultProjection() throws Exception { sampleIdentifiers.add(sampleIdentifier2); sampleFilter.setSampleIdentifiers(sampleIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(sampleFilter))) @@ -272,6 +279,7 @@ public void fetchSamplesDefaultProjection() throws Exception { } @Test + @WithMockUser public void fetchSamplesByUniqueSampleKeysDefaultProjection() throws Exception { List sampleList = createExampleSamples(); @@ -285,7 +293,7 @@ public void fetchSamplesByUniqueSampleKeysDefaultProjection() throws Exception { uniqueSampleKeys.add("dGVzdF9zdGFibGVfaWRfMjp0ZXN0X3N0dWR5XzE"); sampleFilter.setUniqueSampleKeys(uniqueSampleKeys); - mockMvc.perform(MockMvcRequestBuilders.post("/samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(sampleFilter))) @@ -311,6 +319,7 @@ public void fetchSamplesByUniqueSampleKeysDefaultProjection() throws Exception { } @Test + @WithMockUser public void fetchSamplesMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -331,7 +340,7 @@ public void fetchSamplesMetaProjection() throws Exception { sampleIdentifiers.add(sampleIdentifier2); sampleFilter.setSampleIdentifiers(sampleIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/samples/fetch").with(csrf()) .param("projection", "META") .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(sampleFilter))) diff --git a/web/src/test/java/org/cbioportal/web/SampleListControllerTest.java b/src/test/java/org/cbioportal/web/SampleListControllerTest.java similarity index 91% rename from web/src/test/java/org/cbioportal/web/SampleListControllerTest.java rename to src/test/java/org/cbioportal/web/SampleListControllerTest.java index 3f096b14121..5f2900fb057 100644 --- a/web/src/test/java/org/cbioportal/web/SampleListControllerTest.java +++ b/src/test/java/org/cbioportal/web/SampleListControllerTest.java @@ -1,37 +1,37 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import org.cbioportal.model.CancerStudy; import org.cbioportal.model.SampleList; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.SampleListService; import org.cbioportal.service.exception.SampleListNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; import com.fasterxml.jackson.databind.ObjectMapper; import java.util.ArrayList; import java.util.Arrays; import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {SampleListController.class, TestConfig.class}) public class SampleListControllerTest { private static final int TEST_LIST_ID_1 = 1; @@ -57,29 +57,16 @@ public class SampleListControllerTest { private static final String TEST_SAMPLE_ID_1 = "test_sample_id_1"; private static final String TEST_SAMPLE_ID_2 = "test_sample_id_2"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private SampleListService sampleListService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public SampleListService sampleListService() { - return Mockito.mock(SampleListService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(sampleListService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllSampleListsDefaultProjection() throws Exception { List sampleLists = createExampleSampleLists(); @@ -87,7 +74,7 @@ public void getAllSampleListsDefaultProjection() throws Exception { Mockito.when(sampleListService.getAllSampleLists(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(sampleLists); - mockMvc.perform(MockMvcRequestBuilders.get("/sample-lists") + mockMvc.perform(MockMvcRequestBuilders.get("/api/sample-lists") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -107,6 +94,7 @@ public void getAllSampleListsDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllSampleListsDetailedProjection() throws Exception { List sampleLists = new ArrayList<>(); @@ -115,7 +103,7 @@ public void getAllSampleListsDetailedProjection() throws Exception { Mockito.when(sampleListService.getAllSampleLists(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(sampleLists); - mockMvc.perform(MockMvcRequestBuilders.get("/sample-lists") + mockMvc.perform(MockMvcRequestBuilders.get("/api/sample-lists") .param("projection", "DETAILED") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -131,6 +119,7 @@ public void getAllSampleListsDetailedProjection() throws Exception { } @Test + @WithMockUser public void getAllSampleListsMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -138,19 +127,20 @@ public void getAllSampleListsMetaProjection() throws Exception { Mockito.when(sampleListService.getMetaSampleLists()).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/sample-lists") + mockMvc.perform(MockMvcRequestBuilders.get("/api/sample-lists") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getSampleListNotFound() throws Exception { Mockito.when(sampleListService.getSampleList(Mockito.anyString())).thenThrow( new SampleListNotFoundException("test_sample_list_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/sample-lists/test_sample_list_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/sample-lists/test_sample_list_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message") @@ -158,13 +148,14 @@ public void getSampleListNotFound() throws Exception { } @Test + @WithMockUser public void getSampleList() throws Exception { SampleList sampleList = createExampleSampleListWithStudy(); Mockito.when(sampleListService.getSampleList(Mockito.anyString())).thenReturn(sampleList); - mockMvc.perform(MockMvcRequestBuilders.get("/sample-lists/test_sample_list_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/sample-lists/test_sample_list_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -178,6 +169,7 @@ public void getSampleList() throws Exception { } @Test + @WithMockUser public void getAllSampleListsInStudyDefaultProjection() throws Exception { List sampleLists = createExampleSampleLists(); @@ -186,7 +178,7 @@ public void getAllSampleListsInStudyDefaultProjection() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(sampleLists); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/sample-lists") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/sample-lists") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -206,6 +198,7 @@ public void getAllSampleListsInStudyDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllSampleListsInStudyDetailedProjection() throws Exception { List sampleLists = new ArrayList<>(); @@ -214,7 +207,7 @@ public void getAllSampleListsInStudyDetailedProjection() throws Exception { Mockito.when(sampleListService.getAllSampleListsInStudy(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(sampleLists); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/sample-lists") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/sample-lists") .param("projection", "DETAILED") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -230,6 +223,7 @@ public void getAllSampleListsInStudyDetailedProjection() throws Exception { } @Test + @WithMockUser public void getAllSampleListsInStudyMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -237,13 +231,14 @@ public void getAllSampleListsInStudyMetaProjection() throws Exception { Mockito.when(sampleListService.getMetaSampleListsInStudy(Mockito.anyString())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/sample-lists") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/sample-lists") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getAllSampleIdsInSampleList() throws Exception { List sampleIds = new ArrayList<>(); @@ -252,7 +247,7 @@ public void getAllSampleIdsInSampleList() throws Exception { Mockito.when(sampleListService.getAllSampleIdsInSampleList(Mockito.anyString())).thenReturn(sampleIds); - mockMvc.perform(MockMvcRequestBuilders.get("/sample-lists/test_sample_list_id/sample-ids") + mockMvc.perform(MockMvcRequestBuilders.get("/api/sample-lists/test_sample_list_id/sample-ids") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -262,6 +257,7 @@ public void getAllSampleIdsInSampleList() throws Exception { } @Test + @WithMockUser public void fetchSampleLists() throws Exception { List sampleLists = createExampleSampleLists(); @@ -269,7 +265,7 @@ public void fetchSampleLists() throws Exception { Mockito.when(sampleListService.fetchSampleLists(Mockito.anyList(), Mockito.anyString())) .thenReturn(sampleLists); - mockMvc.perform(MockMvcRequestBuilders.post("/sample-lists/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/sample-lists/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(Arrays.asList(TEST_STABLE_ID_1, TEST_STABLE_ID_2)))) diff --git a/web/src/test/java/org/cbioportal/web/ServerStatusControllerTest.java b/src/test/java/org/cbioportal/web/ServerStatusControllerTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/ServerStatusControllerTest.java rename to src/test/java/org/cbioportal/web/ServerStatusControllerTest.java diff --git a/web/src/test/java/org/cbioportal/web/SignificantCopyNumberRegionControllerTest.java b/src/test/java/org/cbioportal/web/SignificantCopyNumberRegionControllerTest.java similarity index 89% rename from web/src/test/java/org/cbioportal/web/SignificantCopyNumberRegionControllerTest.java rename to src/test/java/org/cbioportal/web/SignificantCopyNumberRegionControllerTest.java index 23b176d406b..f91c5aaa539 100644 --- a/web/src/test/java/org/cbioportal/web/SignificantCopyNumberRegionControllerTest.java +++ b/src/test/java/org/cbioportal/web/SignificantCopyNumberRegionControllerTest.java @@ -1,36 +1,32 @@ package org.cbioportal.web; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.Gistic; import org.cbioportal.model.GisticToGene; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.SignificantCopyNumberRegionService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {SignificantCopyNumberRegionController.class, TestConfig.class}) public class SignificantCopyNumberRegionControllerTest { private static final Long TEST_GISTIC_ROI_ID_1 = 1L; @@ -57,27 +53,14 @@ public class SignificantCopyNumberRegionControllerTest { private static final int TEST_ENTREZ_GENE_ID_4 = 4; private static final String TEST_HUGO_GENE_SYMBOL_4 = "test_hugo_gene_symbol_4"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private SignificantCopyNumberRegionService significantCopyNumberRegionService; + @Autowired private MockMvc mockMvc; - @Bean - public SignificantCopyNumberRegionService significantCopyNumberRegionService() { - return Mockito.mock(SignificantCopyNumberRegionService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(significantCopyNumberRegionService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getSignificantCopyNumberRegions() throws Exception { List gisticList = new ArrayList<>(); @@ -130,7 +113,7 @@ public void getSignificantCopyNumberRegions() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(gisticList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/significant-copy-number-regions") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/significant-copy-number-regions") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -162,6 +145,7 @@ public void getSignificantCopyNumberRegions() throws Exception { } @Test + @WithMockUser public void getSignificantCopyNumberRegionsMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -170,7 +154,7 @@ public void getSignificantCopyNumberRegionsMetaProjection() throws Exception { Mockito.when(significantCopyNumberRegionService.getMetaSignificantCopyNumberRegions(Mockito.anyString())) .thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/significant-copy-number-regions") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/significant-copy-number-regions") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); diff --git a/web/src/test/java/org/cbioportal/web/SignificantlyMutatedGenesControllerTest.java b/src/test/java/org/cbioportal/web/SignificantlyMutatedGenesControllerTest.java similarity index 85% rename from web/src/test/java/org/cbioportal/web/SignificantlyMutatedGenesControllerTest.java rename to src/test/java/org/cbioportal/web/SignificantlyMutatedGenesControllerTest.java index 3685221e0a7..a8bd79a8fe2 100644 --- a/web/src/test/java/org/cbioportal/web/SignificantlyMutatedGenesControllerTest.java +++ b/src/test/java/org/cbioportal/web/SignificantlyMutatedGenesControllerTest.java @@ -1,35 +1,31 @@ package org.cbioportal.web; +import java.math.BigDecimal; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.MutSig; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.SignificantlyMutatedGeneService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {SignificantlyMutatedGenesController.class, TestConfig.class}) public class SignificantlyMutatedGenesControllerTest { private static final int TEST_CANCER_STUDY_ID_1 = 1; @@ -49,27 +45,14 @@ public class SignificantlyMutatedGenesControllerTest { private static final BigDecimal TEST_P_VALUE_2 = new BigDecimal(0.2); private static final BigDecimal TEST_Q_VALUE_2 = new BigDecimal(0.2); - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private SignificantlyMutatedGeneService significantlyMutatedGeneService; + @Autowired private MockMvc mockMvc; - @Bean - public SignificantlyMutatedGeneService significantlyMutatedGeneService() { - return Mockito.mock(SignificantlyMutatedGeneService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(significantlyMutatedGeneService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getSignificantlyMutatedGenesDefaultProjection() throws Exception { List mutSigList = new ArrayList<>(); @@ -100,7 +83,7 @@ public void getSignificantlyMutatedGenesDefaultProjection() throws Exception { Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) .thenReturn(mutSigList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/significantly-mutated-genes") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/significantly-mutated-genes") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -128,6 +111,7 @@ public void getSignificantlyMutatedGenesDefaultProjection() throws Exception { } @Test + @WithMockUser public void getSignificantlyMutatedGenesMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -136,7 +120,7 @@ public void getSignificantlyMutatedGenesMetaProjection() throws Exception { Mockito.when(significantlyMutatedGeneService.getMetaSignificantlyMutatedGenes(Mockito.anyString())) .thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/significantly-mutated-genes") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/significantly-mutated-genes") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); diff --git a/src/test/java/org/cbioportal/web/StaticDataTimestampControllerTest.java b/src/test/java/org/cbioportal/web/StaticDataTimestampControllerTest.java new file mode 100644 index 00000000000..1b555c2fbce --- /dev/null +++ b/src/test/java/org/cbioportal/web/StaticDataTimestampControllerTest.java @@ -0,0 +1,43 @@ +package org.cbioportal.web; + +import java.util.HashMap; +import org.cbioportal.service.StaticDataTimestampService; +import org.cbioportal.web.config.TestConfig; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mockito; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; +import org.springframework.test.web.servlet.result.MockMvcResultMatchers; + +@RunWith(SpringJUnit4ClassRunner.class) +@WebMvcTest +@ContextConfiguration(classes = {StaticDataTimestampController.class, TestConfig.class}) +public class StaticDataTimestampControllerTest { + + @MockBean + private StaticDataTimestampService service; + + @Autowired + private MockMvc mockMvc; + + @Test + @WithMockUser + public void getAllTimestamps() throws Exception { + HashMap pairs = new HashMap<>(); + pairs.put("gene", "1997-08-13 22:00:00"); + Mockito.when(service.getTimestamps(Mockito.anyList())).thenReturn(pairs); + + mockMvc.perform(MockMvcRequestBuilders.get("/api/timestamps") + .accept(MediaType.APPLICATION_JSON)) + .andExpect(MockMvcResultMatchers.status().isOk()) + .andExpect(MockMvcResultMatchers.jsonPath("$.gene").value("1997-08-13 22:00:00")); + } +} \ No newline at end of file diff --git a/web/src/test/java/org/cbioportal/web/StructuralVariantControllerTest.java b/src/test/java/org/cbioportal/web/StructuralVariantControllerTest.java similarity index 96% rename from web/src/test/java/org/cbioportal/web/StructuralVariantControllerTest.java rename to src/test/java/org/cbioportal/web/StructuralVariantControllerTest.java index 3a8dcb8f3b1..0be3faf380a 100644 --- a/web/src/test/java/org/cbioportal/web/StructuralVariantControllerTest.java +++ b/src/test/java/org/cbioportal/web/StructuralVariantControllerTest.java @@ -23,6 +23,10 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; import java.util.ArrayList; import java.util.List; @@ -32,10 +36,9 @@ import org.cbioportal.model.StructuralVariantQuery; import org.cbioportal.model.StructuralVariantSpecialValue; import org.cbioportal.service.StructuralVariantService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.SampleMolecularIdentifier; import org.cbioportal.web.parameter.StructuralVariantFilter; - -import com.fasterxml.jackson.databind.ObjectMapper; import org.hamcrest.Matchers; import org.junit.Assert; import org.junit.Before; @@ -44,22 +47,21 @@ import org.mockito.ArgumentCaptor; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.*; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {StructuralVariantController.class, TestConfig.class}) public class StructuralVariantControllerTest { private static final String TEST_GENETIC_PROFILE_STABLE_ID_1 = "test_genetic_profile_stable_id_1"; @@ -115,28 +117,16 @@ public class StructuralVariantControllerTest { private static final String TEST_SV_STATUS = "SOMATIC"; private static final String TEST_ANNOTATION_JSON_1 = "{\"columnName\":{\"fieldName\":\"fieldValue\"}}"; - @Autowired - private WebApplicationContext wac; + @MockBean + private StructuralVariantService structuralVariantService; @Autowired - private StructuralVariantService structuralVariantService; private MockMvc mockMvc; private ObjectMapper objectMapper = new ObjectMapper(); - @Bean - public StructuralVariantService structuralVariantService() { - return Mockito.mock(StructuralVariantService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(structuralVariantService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void fetchStructuralVariantsMolecularProfileId() throws Exception { List structuralVariant = createExampleStructuralVariant(); @@ -146,7 +136,7 @@ public void fetchStructuralVariantsMolecularProfileId() throws Exception { StructuralVariantFilter structuralVariantFilter = createStructuralVariantFilterMolecularProfileId(); - mockMvc.perform(MockMvcRequestBuilders.post("/structural-variant/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/structural-variant/fetch").with(csrf()) .accept(MediaType.parseMediaType("application/json;charset=UTF-8")) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(structuralVariantFilter))) @@ -204,6 +194,7 @@ public void fetchStructuralVariantsMolecularProfileId() throws Exception { } @Test + @WithMockUser public void fetchStructuralVariantsSampleMolecularIdentifier() throws Exception { List structuralVariant = createExampleStructuralVariant(); @@ -213,7 +204,7 @@ public void fetchStructuralVariantsSampleMolecularIdentifier() throws Exception StructuralVariantFilter structuralVariantFilter = createStructuralVariantFilterSampleMolecularIdentifier(); - mockMvc.perform(MockMvcRequestBuilders.post("/structural-variant/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/structural-variant/fetch").with(csrf()) .accept(MediaType.parseMediaType("application/json;charset=UTF-8")) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(structuralVariantFilter))) @@ -272,6 +263,7 @@ public void fetchStructuralVariantsSampleMolecularIdentifier() throws Exception } @Test + @WithMockUser public void fetchStructuralVariantsBothMolecularProfileIdAndSampleMolecularIdentifier() throws Exception { List structuralVariant = createExampleStructuralVariant(); @@ -281,7 +273,7 @@ public void fetchStructuralVariantsBothMolecularProfileIdAndSampleMolecularIdent StructuralVariantFilter structuralVariantFilter = createStructuralVariantFilterMolecularProfileIdAndSampleMolecularIdentifier(); - mockMvc.perform(MockMvcRequestBuilders.post("/structural-variant/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/structural-variant/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(structuralVariantFilter))) @@ -291,9 +283,10 @@ public void fetchStructuralVariantsBothMolecularProfileIdAndSampleMolecularIdent } @Test + @WithMockUser public void fetchStructuralVariantsWithBothEntrezIdsAndStructVariantIdsReturnsStatusOk() throws Exception { String structuralVariantFilter = createStructuralVariantFilterWithEntrezIdAndStructuralVariantJson(); - mockMvc.perform(MockMvcRequestBuilders.post("/structural-variant/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/structural-variant/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(structuralVariantFilter)) @@ -301,6 +294,7 @@ public void fetchStructuralVariantsWithBothEntrezIdsAndStructVariantIdsReturnsSt } @Test + @WithMockUser public void fetchStructuralVariantsWithStructuralVariantSpecialQueryValues() throws Exception { List structuralVariant = createExampleStructuralVariant(); @@ -311,7 +305,7 @@ public void fetchStructuralVariantsWithStructuralVariantSpecialQueryValues() thr )).thenReturn(structuralVariant); String structuralVariantFilterJson = createStructuralVariantFilterWithStructuralVariantWildcard(); - mockMvc.perform(MockMvcRequestBuilders.post("/structural-variant/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/structural-variant/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(structuralVariantFilterJson)) @@ -336,6 +330,7 @@ public void fetchStructuralVariantsWithStructuralVariantSpecialQueryValues() thr } @Test + @WithMockUser public void fetchStructuralVariantsWithStructuralVariantIdWithNoIdAndSpecialValueReturnsBadRequest() throws Exception { List structuralVariant = createExampleStructuralVariant(); @@ -345,7 +340,7 @@ public void fetchStructuralVariantsWithStructuralVariantIdWithNoIdAndSpecialValu )).thenReturn(structuralVariant); String structuralVariantFilterJson = createStructuralVariantFilterWithEmptyStructuralVariantId(); - mockMvc.perform(MockMvcRequestBuilders.post("/structural-variant/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/structural-variant/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(structuralVariantFilterJson)) diff --git a/web/src/test/java/org/cbioportal/web/StudyControllerTest.java b/src/test/java/org/cbioportal/web/StudyControllerTest.java similarity index 93% rename from web/src/test/java/org/cbioportal/web/StudyControllerTest.java rename to src/test/java/org/cbioportal/web/StudyControllerTest.java index b8dcf795ecf..1540bf6244c 100644 --- a/web/src/test/java/org/cbioportal/web/StudyControllerTest.java +++ b/src/test/java/org/cbioportal/web/StudyControllerTest.java @@ -1,22 +1,33 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; +import java.text.ParseException; +import java.text.SimpleDateFormat; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.TimeZone; import org.cbioportal.model.CancerStudy; import org.cbioportal.model.CancerStudyTags; import org.cbioportal.model.TypeOfCancer; import org.cbioportal.model.meta.BaseMeta; import org.cbioportal.service.StudyService; import org.cbioportal.service.exception.StudyNotFoundException; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.utils.security.AccessLevel; import org.cbioportal.web.parameter.HeaderKeyConstants; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; import org.springframework.test.context.web.WebAppConfiguration; @@ -24,22 +35,12 @@ import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; -import com.fasterxml.jackson.databind.ObjectMapper; -import java.text.ParseException; -import java.text.SimpleDateFormat; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; -import java.util.TimeZone; import static org.mockito.ArgumentMatchers.eq; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {StudyController.class, TestConfig.class}) public class StudyControllerTest { private static final int TEST_CANCER_STUDY_ID_1 = 1; @@ -72,10 +73,7 @@ public class StudyControllerTest { private static final String TEST_PARENT = "test_parent"; private static final String TEST_TAGS_3 = "{\"Analyst\":{\"Name\":\"Frank\",\"Email\":\"frank@something.com\"},\"Load id\":43}"; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private StudyService studyService; @Autowired @@ -83,21 +81,11 @@ public class StudyControllerTest { private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public StudyService studyService() { - return Mockito.mock(StudyService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(studyService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getAllStudiesDefaultProjection() throws Exception { List cancerStudyList = createExampleStudies(); @@ -105,7 +93,7 @@ public void getAllStudiesDefaultProjection() throws Exception { Mockito.when(studyService.getAllStudies(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(cancerStudyList); - mockMvc.perform(MockMvcRequestBuilders.get("/studies") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -138,19 +126,21 @@ public void getAllStudiesDefaultProjection() throws Exception { } @Test + @WithMockUser public void getAllStudiesSetAccessLevelReadIsDefault() throws Exception { AccessLevel expectedAccessLevel = AccessLevel.READ; Mockito.when(studyService.getAllStudies(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), eq(expectedAccessLevel))).thenReturn(new ArrayList<>()); - mockMvc.perform(MockMvcRequestBuilders.get("/studies") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()); } @Test + @WithMockUser public void getAllStudiesSetAccessLevelListConditionally() throws Exception { ReflectionTestUtils.setField(studyController, "showUnauthorizedStudiesOnHomePage", true); @@ -159,7 +149,7 @@ public void getAllStudiesSetAccessLevelListConditionally() throws Exception { Mockito.when(studyService.getAllStudies(Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any(), eq(expectedAccessLevel))).thenReturn(new ArrayList<>()); - mockMvc.perform(MockMvcRequestBuilders.get("/studies") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()); @@ -167,6 +157,7 @@ public void getAllStudiesSetAccessLevelListConditionally() throws Exception { } @Test + @WithMockUser public void getAllStudiesMetaProjection() throws Exception { BaseMeta baseMeta = new BaseMeta(); @@ -174,24 +165,26 @@ public void getAllStudiesMetaProjection() throws Exception { Mockito.when(studyService.getMetaStudies(Mockito.any())).thenReturn(baseMeta); - mockMvc.perform(MockMvcRequestBuilders.get("/studies") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies") .param("projection", "META")) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); } @Test + @WithMockUser public void getStudyNotFound() throws Exception { Mockito.when(studyService.getStudy(Mockito.anyString())).thenThrow(new StudyNotFoundException("test_study_id")); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isNotFound()) .andExpect(MockMvcResultMatchers.jsonPath("$.message").value("Study not found: test_study_id")); } @Test + @WithMockUser public void getStudy() throws Exception { SimpleDateFormat simpleDateFormat = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss"); @@ -219,7 +212,7 @@ public void getStudy() throws Exception { Mockito.when(studyService.getStudy(Mockito.anyString())).thenReturn(cancerStudy); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -244,6 +237,7 @@ public void getStudy() throws Exception { } @Test + @WithMockUser public void fetchStudies() throws Exception { List cancerStudyList = createExampleStudies(); @@ -251,7 +245,7 @@ public void fetchStudies() throws Exception { Mockito.when(studyService.fetchStudies(Mockito.anyList(), Mockito.anyString())) .thenReturn(cancerStudyList); - mockMvc.perform(MockMvcRequestBuilders.post("/studies/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/studies/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(Arrays.asList(TEST_CANCER_STUDY_IDENTIFIER_1, @@ -286,6 +280,7 @@ public void fetchStudies() throws Exception { } @Test + @WithMockUser public void getTags() throws Exception { AccessLevel expectedAccessLevel = AccessLevel.READ; CancerStudyTags cancerStudyTags = new CancerStudyTags(); @@ -293,7 +288,7 @@ public void getTags() throws Exception { Mockito.when(studyService.getTags(Mockito.anyString(), Mockito.eq(expectedAccessLevel))).thenReturn(cancerStudyTags); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/tags") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/tags") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -301,11 +296,12 @@ public void getTags() throws Exception { } @Test + @WithMockUser public void getEmptyTags() throws Exception { AccessLevel expectedAccessLevel = AccessLevel.READ; Mockito.when(studyService.getTags(Mockito.anyString(), Mockito.eq(expectedAccessLevel))).thenReturn(null); - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/tags") + mockMvc.perform(MockMvcRequestBuilders.get("/api/studies/test_study_id/tags") .accept(MediaType.APPLICATION_JSON)) .andExpect(MockMvcResultMatchers.status().isOk()) .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) @@ -313,6 +309,7 @@ public void getEmptyTags() throws Exception { } @Test + @WithMockUser public void getAllTags() throws Exception { List cancerStudyTagsList = new ArrayList<>(); @@ -328,7 +325,7 @@ public void getAllTags() throws Exception { Mockito.when(studyService.getTagsForMultipleStudies(Mockito.anyList())).thenReturn(cancerStudyTagsList); - mockMvc.perform(MockMvcRequestBuilders.post("/studies/tags/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/studies/tags/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(Arrays.asList(TEST_CANCER_STUDY_IDENTIFIER_1, diff --git a/web/src/test/java/org/cbioportal/web/StudyViewControllerTest.java b/src/test/java/org/cbioportal/web/StudyViewControllerTest.java similarity index 84% rename from web/src/test/java/org/cbioportal/web/StudyViewControllerTest.java rename to src/test/java/org/cbioportal/web/StudyViewControllerTest.java index 3951e57b963..2dd141225a8 100644 --- a/web/src/test/java/org/cbioportal/web/StudyViewControllerTest.java +++ b/src/test/java/org/cbioportal/web/StudyViewControllerTest.java @@ -1,43 +1,98 @@ package org.cbioportal.web; +import static org.mockito.ArgumentMatchers.any; +import static org.mockito.ArgumentMatchers.anyList; +import static org.mockito.ArgumentMatchers.eq; +import static org.mockito.Mockito.anyString; +import static org.mockito.Mockito.when; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; -import org.cbioportal.model.*; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; +import org.cbioportal.model.AlterationCountByGene; +import org.cbioportal.model.AlterationFilter; +import org.cbioportal.model.ClinicalAttribute; +import org.cbioportal.model.ClinicalData; +import org.cbioportal.model.ClinicalDataCount; +import org.cbioportal.model.ClinicalDataCountItem; +import org.cbioportal.model.ClinicalEventTypeCount; +import org.cbioportal.model.CopyNumberCountByGene; +import org.cbioportal.model.GenericAssayDataCount; +import org.cbioportal.model.GenericAssayDataCountItem; +import org.cbioportal.model.GenomicDataCount; +import org.cbioportal.model.GenomicDataCountItem; +import org.cbioportal.model.Sample; +import org.cbioportal.model.StructuralVariantFilterQuery; +import org.cbioportal.model.StructuralVariantSpecialValue; +import org.cbioportal.model.StudyViewStructuralVariantFilter; import org.cbioportal.model.util.Select; import org.cbioportal.persistence.AlterationRepository; -import org.cbioportal.service.*; +import org.cbioportal.service.AlterationCountService; +import org.cbioportal.service.ClinicalAttributeService; +import org.cbioportal.service.ClinicalDataService; +import org.cbioportal.service.ClinicalEventService; +import org.cbioportal.service.CustomDataService; +import org.cbioportal.service.DiscreteCopyNumberService; +import org.cbioportal.service.GenePanelService; +import org.cbioportal.service.GeneService; +import org.cbioportal.service.MolecularProfileService; +import org.cbioportal.service.PatientService; +import org.cbioportal.service.SampleListService; +import org.cbioportal.service.SampleService; +import org.cbioportal.service.StudyViewService; +import org.cbioportal.service.TreatmentService; +import org.cbioportal.service.ViolinPlotService; +import org.cbioportal.service.util.ClinicalAttributeUtil; import org.cbioportal.service.util.MolecularProfileUtil; -import org.cbioportal.web.config.CustomObjectMapper; -import org.cbioportal.web.parameter.*; +import org.cbioportal.web.config.TestConfig; +import org.cbioportal.web.parameter.ClinicalDataBinCountFilter; +import org.cbioportal.web.parameter.ClinicalDataBinFilter; +import org.cbioportal.web.parameter.ClinicalDataCountFilter; +import org.cbioportal.web.parameter.ClinicalDataFilter; +import org.cbioportal.web.parameter.GenericAssayDataCountFilter; +import org.cbioportal.web.parameter.GenericAssayDataFilter; +import org.cbioportal.web.parameter.GenomicDataCountFilter; +import org.cbioportal.web.parameter.GenomicDataFilter; +import org.cbioportal.web.parameter.SampleIdentifier; +import org.cbioportal.web.parameter.StudyViewFilter; +import org.cbioportal.web.util.ClinicalDataBinUtil; +import org.cbioportal.web.util.ClinicalDataFetcher; +import org.cbioportal.web.util.DataBinHelper; +import org.cbioportal.web.util.DataBinner; +import org.cbioportal.web.util.DiscreteDataBinner; +import org.cbioportal.web.util.LinearDataBinner; +import org.cbioportal.web.util.LogScaleDataBinner; +import org.cbioportal.web.util.ScientificSmallDataBinner; import org.cbioportal.web.util.StudyViewFilterApplier; import org.junit.Before; import org.junit.Ignore; +import org.cbioportal.web.util.StudyViewFilterUtil; import org.junit.Test; import org.junit.runner.RunWith; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.List; import static org.mockito.ArgumentMatchers.*; -import static org.mockito.Mockito.*; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +// TODO clean up dependencies for this test (use Mocks better) +// TODO Rework to accurately test StudyViewController +@ContextConfiguration(classes = {StudyViewController.class, StudyViewFilterUtil.class, MolecularProfileUtil.class, ClinicalDataBinUtil.class, DataBinner.class, + DiscreteDataBinner.class, LinearDataBinner.class, ScientificSmallDataBinner.class, LogScaleDataBinner.class, ClinicalDataBinUtil.class, + DataBinHelper.class, TestConfig.class}) public class StudyViewControllerTest { private static final String TEST_STUDY_ID = "test_study_id"; @@ -71,75 +126,71 @@ public class StudyViewControllerTest { private List filteredSampleIdentifiers = new ArrayList<>(); private List clinicalData = new ArrayList<>(); - @Autowired - private WebApplicationContext wac; + private ObjectMapper objectMapper = new ObjectMapper(); - @Autowired + @MockBean private StudyViewFilterApplier studyViewFilterApplier; - @Autowired + @MockBean private ClinicalDataService clinicalDataService; - @Autowired + @MockBean private DiscreteCopyNumberService discreteCopyNumberService; - @Autowired + @MockBean private SampleService sampleService; - @Autowired - private StudyViewService studyViewService; - @Autowired + @MockBean private GenePanelService genePanelService; - @Autowired + @MockBean private ClinicalAttributeService clinicalAttributeService; - @Autowired + @MockBean private PatientService patientService; - @Autowired - private ClinicalEventService clinicalEventService; - private ObjectMapper objectMapper = new CustomObjectMapper(); + @MockBean + public MolecularProfileUtil molecularProfileUtil; - private MockMvc mockMvc; + @MockBean + public TreatmentService treatmentService; - private AlterationFilter alterationFilter = new AlterationFilter(); + @MockBean + public AlterationCountService alterationCountService; - @Bean - public MolecularProfileUtil molecularProfileUtil() { - return new MolecularProfileUtil(); - } + @MockBean + public StudyViewService studyViewService; - @Bean - public StudyViewFilterApplier studyViewFilterApplier() { - return mock(StudyViewFilterApplier.class); - } - - @Bean - public TreatmentService treatmentService() { - return mock(TreatmentService.class); - } - - @Bean - public AlterationCountService alterationCountService() { - return mock(AlterationCountService.class); - } + @MockBean + public AlterationRepository alterationRepository; - @Bean - public StudyViewService studyViewService() { - return mock(StudyViewService.class); - } - - @Bean - public AlterationRepository alterationRepository() { - return mock(AlterationRepository.class); - } + @MockBean + private ClinicalDataFetcher clinicalDataFetcher; - @Bean - public ViolinPlotService violinPlotService() { - return mock(ViolinPlotService.class); - } + @MockBean + private ClinicalAttributeUtil clinicalAttributeUtil; + @MockBean + private SampleListService sampleListService; - private ArrayList filteredSamples = new ArrayList<>(); + @MockBean + private MolecularProfileService molecularProfileService; + + @MockBean + private ClinicalEventService clinicalEventService; + + @MockBean + private GeneService geneService; + + @MockBean + private ViolinPlotService violinPlotService; + + @MockBean + private ClinicalDataBinUtil clinicalDataBinUtil; + + @Autowired + private MockMvc mockMvc; + private AlterationFilter alterationFilter = new AlterationFilter(); + + private ArrayList filteredSamples = new ArrayList<>(); + @Before public void setUp() throws Exception { - SampleIdentifier sampleIdentifier = new SampleIdentifier(); sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); sampleIdentifier.setStudyId(TEST_STUDY_ID); @@ -163,7 +214,7 @@ public void setUp() throws Exception { clinicalData1.setSampleId(TEST_SAMPLE_ID_1); clinicalData1.setPatientId(TEST_PATIENT_ID_1); clinicalData.add(clinicalData1); - + ClinicalData clinicalData2 = new ClinicalData(); clinicalData2.setAttrId(TEST_ATTRIBUTE_ID); clinicalData2.setAttrValue(TEST_CLINICAL_DATA_VALUE_2); @@ -171,7 +222,7 @@ public void setUp() throws Exception { clinicalData2.setSampleId(TEST_SAMPLE_ID_2); clinicalData2.setPatientId(TEST_PATIENT_ID_2); clinicalData.add(clinicalData2); - + ClinicalData clinicalData3 = new ClinicalData(); clinicalData3.setAttrId(TEST_ATTRIBUTE_ID); clinicalData3.setAttrValue(TEST_CLINICAL_DATA_VALUE_3); @@ -179,21 +230,17 @@ public void setUp() throws Exception { clinicalData3.setSampleId(TEST_SAMPLE_ID_3); clinicalData3.setPatientId(TEST_PATIENT_ID_3); clinicalData.add(clinicalData3); - - reset(studyViewFilterApplier); - reset(clinicalDataService); - reset(discreteCopyNumberService); - reset(sampleService); - reset(genePanelService); - reset(sampleService); - reset(clinicalAttributeService); - reset(patientService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); } @Test + @WithMockUser public void fetchClinicalDataCounts() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); List clinicalDataCountItems = new ArrayList<>(); @@ -213,7 +260,7 @@ public void fetchClinicalDataCounts() throws Exception { clinicalDataCountItem.setCounts(clinicalDataCounts); clinicalDataCountItems.add(clinicalDataCountItem); - when(clinicalDataService.fetchClinicalDataCounts(anyList(), anyList(), + when(clinicalDataService.fetchClinicalDataCounts(anyList(), anyList(), anyList())).thenReturn(clinicalDataCountItems); ClinicalDataCountFilter clinicalDataCountFilter = new ClinicalDataCountFilter(); @@ -224,7 +271,7 @@ public void fetchClinicalDataCounts() throws Exception { studyViewFilter.setStudyIds(Arrays.asList(TEST_STUDY_ID)); clinicalDataCountFilter.setStudyViewFilter(studyViewFilter); - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-data-counts/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-data-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(clinicalDataCountFilter))) @@ -240,11 +287,42 @@ public void fetchClinicalDataCounts() throws Exception { } @Test + @WithMockUser + @Ignore + //TODO: Update Test currently out of scope of StudyViewController (need to make a new unit test to test ClinicalDataBinUtil) public void fetchClinicalDataBinCounts() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); + + List clinicalData = new ArrayList<>(); + ClinicalData clinicalData1 = new ClinicalData(); + clinicalData1.setAttrId(TEST_ATTRIBUTE_ID); + clinicalData1.setAttrValue(TEST_CLINICAL_DATA_VALUE_1); + clinicalData1.setStudyId(TEST_STUDY_ID); + clinicalData1.setSampleId(TEST_SAMPLE_ID_1); + clinicalData1.setPatientId(TEST_PATIENT_ID_1); + clinicalData.add(clinicalData1); + ClinicalData clinicalData2 = new ClinicalData(); + clinicalData2.setAttrId(TEST_ATTRIBUTE_ID); + clinicalData2.setAttrValue(TEST_CLINICAL_DATA_VALUE_2); + clinicalData2.setStudyId(TEST_STUDY_ID); + clinicalData2.setSampleId(TEST_SAMPLE_ID_2); + clinicalData2.setPatientId(TEST_PATIENT_ID_2); + clinicalData.add(clinicalData2); + ClinicalData clinicalData3 = new ClinicalData(); + clinicalData3.setAttrId(TEST_ATTRIBUTE_ID); + clinicalData3.setAttrValue(TEST_CLINICAL_DATA_VALUE_3); + clinicalData3.setStudyId(TEST_STUDY_ID); + clinicalData3.setSampleId(TEST_SAMPLE_ID_3); + clinicalData.add(clinicalData3); + when(clinicalDataService.fetchClinicalData(anyList(), anyList(), - anyList(), anyString(), anyString())).thenReturn(clinicalData); + anyList(), any(String.class), any(String.class))).thenReturn(clinicalData); ClinicalAttribute clinicalAttribute1 =new ClinicalAttribute(); clinicalAttribute1.setAttrId(TEST_ATTRIBUTE_ID); @@ -264,8 +342,10 @@ public void fetchClinicalDataBinCounts() throws Exception StudyViewFilter studyViewFilter = new StudyViewFilter(); studyViewFilter.setStudyIds(Collections.singletonList(TEST_STUDY_ID)); clinicalDataBinCountFilter.setStudyViewFilter(studyViewFilter); + + when(clinicalDataBinUtil.removeSelfFromFilter(any())).thenReturn(studyViewFilter); - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-data-bin-counts/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-data-bin-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(clinicalDataBinCountFilter))) @@ -289,8 +369,14 @@ public void fetchClinicalDataBinCounts() throws Exception } @Test + @WithMockUser public void fetchMutatedGenes() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); List mutationCounts = new ArrayList<>(); @@ -316,7 +402,7 @@ public void fetchMutatedGenes() throws Exception { any(AlterationFilter.class))) .thenReturn(mutationCounts); - mockMvc.perform(MockMvcRequestBuilders.post("/mutated-genes/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/mutated-genes/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -333,8 +419,14 @@ public void fetchMutatedGenes() throws Exception { } @Test - public void fetchStructuralVariantGenes() throws Exception { + @WithMockUser + public void fetchFusionGenes() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); List structuralVariantCounts = new ArrayList<>(); @@ -360,7 +452,7 @@ public void fetchStructuralVariantGenes() throws Exception { StudyViewFilter studyViewFilter = new StudyViewFilter(); studyViewFilter.setStudyIds(Arrays.asList(TEST_STUDY_ID)); - mockMvc.perform(MockMvcRequestBuilders.post("/structuralvariant-genes/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/structuralvariant-genes/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -377,8 +469,14 @@ public void fetchStructuralVariantGenes() throws Exception { } @Test + @WithMockUser public void fetchCNAGenes() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); List cnaCounts = new ArrayList<>(); @@ -406,7 +504,7 @@ public void fetchCNAGenes() throws Exception { StudyViewFilter studyViewFilter = new StudyViewFilter(); studyViewFilter.setStudyIds(Arrays.asList(TEST_STUDY_ID)); - mockMvc.perform(MockMvcRequestBuilders.post("/cna-genes/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/cna-genes/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -427,8 +525,15 @@ public void fetchCNAGenes() throws Exception { } @Test + @WithMockUser public void fetchSampleIds() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); + when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); when(studyViewFilterApplier.apply(any(), eq(false))).thenReturn(filteredSampleIdentifiers); @@ -450,7 +555,7 @@ public void fetchSampleIds() throws Exception { StudyViewFilter studyViewFilter = new StudyViewFilter(); studyViewFilter.setStudyIds(Arrays.asList(TEST_STUDY_ID)); - mockMvc.perform(MockMvcRequestBuilders.post("/filtered-samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/filtered-samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -465,6 +570,7 @@ public void fetchSampleIds() throws Exception { } @Test + @WithMockUser public void fetchSampleCounts() throws Exception { SampleIdentifier sampleIdentifier2 = new SampleIdentifier(); @@ -475,7 +581,6 @@ public void fetchSampleCounts() throws Exception { sampleIdentifier3.setSampleId(TEST_SAMPLE_ID_3); sampleIdentifier3.setStudyId(TEST_STUDY_ID); filteredSampleIdentifiers.add(sampleIdentifier3); - when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); StudyViewFilter studyViewFilter = new StudyViewFilter(); @@ -497,7 +602,7 @@ public void fetchSampleCounts() throws Exception { Arrays.asList(TEST_SAMPLE_ID_1, TEST_SAMPLE_ID_2, TEST_SAMPLE_ID_3))) .thenReturn(genomicDataCounts); - mockMvc.perform(MockMvcRequestBuilders.post("/molecular-profile-sample-counts/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/molecular-profile-sample-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -513,6 +618,7 @@ public void fetchSampleCounts() throws Exception { @Test + @WithMockUser public void fetchGenomicDataCounts() throws Exception { when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); @@ -573,7 +679,7 @@ public void fetchGenomicDataCounts() throws Exception { studyViewFilter.setStudyIds(Arrays.asList(TEST_STUDY_ID)); genomicDataCountFilter.setStudyViewFilter(studyViewFilter); - mockMvc.perform(MockMvcRequestBuilders.post("/genomic-data-counts/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/genomic-data-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genomicDataCountFilter))) @@ -599,8 +705,14 @@ public void fetchGenomicDataCounts() throws Exception { @Ignore("Skip StudyViewControllerTest.fetchClinicalDataDensityPlot due to assertion errors") @Test + @WithMockUser public void fetchClinicalDataDensityPlot() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); ClinicalAttribute clinicalAttribute1 =new ClinicalAttribute(); @@ -653,13 +765,13 @@ public void fetchClinicalDataDensityPlot() throws Exception { clinicalData6.setSampleId(TEST_SAMPLE_ID_3); clinicalData.add(clinicalData6); - when(clinicalDataService.fetchClinicalData(anyList(), anyList(), + when(clinicalDataService.fetchClinicalData(anyList(), anyList(), anyList(), anyString(), anyString())).thenReturn(clinicalData); StudyViewFilter studyViewFilter = new StudyViewFilter(); studyViewFilter.setStudyIds(Arrays.asList(TEST_STUDY_ID)); - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-data-density-plot/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-data-density-plot/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter)) @@ -826,8 +938,14 @@ public void fetchClinicalDataDensityPlot() throws Exception { } @Test + @WithMockUser public void fetchGenericAssayDataCounts() throws Exception { + List filteredSampleIdentifiers = new ArrayList<>(); + SampleIdentifier sampleIdentifier = new SampleIdentifier(); + sampleIdentifier.setSampleId(TEST_SAMPLE_ID_1); + sampleIdentifier.setStudyId(TEST_STUDY_ID); + filteredSampleIdentifiers.add(sampleIdentifier); when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); List genericAssayDataCountItems = new ArrayList<>(); @@ -845,8 +963,8 @@ public void fetchGenericAssayDataCounts() throws Exception { genericAssayDataCountItem.setCounts(genericAssayDataCounts); genericAssayDataCountItems.add(genericAssayDataCountItem); - when(studyViewService.fetchGenericAssayDataCounts(anyList(), anyList(), anyList(), - anyList())).thenReturn(genericAssayDataCountItems); + when(studyViewService.fetchGenericAssayDataCounts(anyList(), anyList(), + anyList(), anyList())).thenReturn(genericAssayDataCountItems); GenericAssayDataCountFilter genericAssayDataCountFilter = new GenericAssayDataCountFilter(); GenericAssayDataFilter genericAssayDataFilter = new GenericAssayDataFilter(); @@ -856,7 +974,7 @@ public void fetchGenericAssayDataCounts() throws Exception { studyViewFilter.setStudyIds(Arrays.asList(TEST_STUDY_ID)); genericAssayDataCountFilter.setStudyViewFilter(studyViewFilter); - mockMvc.perform(MockMvcRequestBuilders.post("/generic-assay-data-counts/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/generic-assay-data-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(genericAssayDataCountFilter))) @@ -870,6 +988,7 @@ public void fetchGenericAssayDataCounts() throws Exception { } @Test + @WithMockUser public void fetchClinicalDataClinicalTable() throws Exception { // For this sake of this test the sample clinical data and patient clinical data are identical. when(clinicalDataService.fetchSampleClinicalTable(anyList(), anyList(), @@ -882,7 +1001,7 @@ public void fetchClinicalDataClinicalTable() throws Exception { when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-data-table/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-data-table/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -904,6 +1023,7 @@ public void fetchClinicalDataClinicalTable() throws Exception { } @Test + @WithMockUser public void fetchClinicalEventTypeCounts() throws Exception { List testEventTypeCounts = Arrays.asList(new ClinicalEventTypeCount(TEST_CLINICAL_EVENT_TYPE, TEST_CLINICAL_EVENT_TYPE_COUNT)); @@ -915,7 +1035,7 @@ public void fetchClinicalEventTypeCounts() throws Exception StudyViewFilter studyViewFilter = new StudyViewFilter(); studyViewFilter.setStudyIds(Collections.singletonList(TEST_STUDY_ID)); - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-event-type-counts/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/clinical-event-type-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -926,6 +1046,7 @@ public void fetchClinicalEventTypeCounts() throws Exception } @Test + @WithMockUser public void validateStructVarFilter() throws Exception { when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); @@ -960,13 +1081,14 @@ public void validateStructVarFilter() throws Exception { structVarFilterQuery.getGene1Query().setSpecialValue(StructuralVariantSpecialValue.ANY_GENE); structVarFilterQuery.getGene2Query().setSpecialValue(StructuralVariantSpecialValue.ANY_GENE); - mockMvc.perform(MockMvcRequestBuilders.post("/filtered-samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/filtered-samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) .andExpect(MockMvcResultMatchers.status().isBadRequest()); } @Test + @WithMockUser public void validateStructVarFilterBothAnyGene() throws Exception { when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); @@ -987,7 +1109,7 @@ public void validateStructVarFilterBothAnyGene() throws Exception { structVarFilterQuery.getGene1Query().setSpecialValue(StructuralVariantSpecialValue.ANY_GENE); structVarFilterQuery.getGene2Query().setSpecialValue(StructuralVariantSpecialValue.ANY_GENE); - mockMvc.perform(MockMvcRequestBuilders.post("/filtered-samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/filtered-samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -995,6 +1117,7 @@ public void validateStructVarFilterBothAnyGene() throws Exception { } @Test + @WithMockUser public void validateStructVarFilterBothNoGene() throws Exception { when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); @@ -1015,7 +1138,7 @@ public void validateStructVarFilterBothNoGene() throws Exception { structVarFilterQuery.getGene1Query().setSpecialValue(StructuralVariantSpecialValue.NO_GENE); structVarFilterQuery.getGene2Query().setSpecialValue(StructuralVariantSpecialValue.NO_GENE); - mockMvc.perform(MockMvcRequestBuilders.post("/filtered-samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/filtered-samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -1023,6 +1146,7 @@ public void validateStructVarFilterBothNoGene() throws Exception { } @Test + @WithMockUser public void validateStructVarFilterBothNoGeneId() throws Exception { when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); @@ -1041,7 +1165,7 @@ public void validateStructVarFilterBothNoGeneId() throws Exception { structuralVariantFilter.setStructVarQueries(Arrays.asList(Arrays.asList(structVarFilterQuery))); studyViewFilter.setStructuralVariantFilters(Arrays.asList(structuralVariantFilter)); - mockMvc.perform(MockMvcRequestBuilders.post("/filtered-samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/filtered-samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) @@ -1049,6 +1173,7 @@ public void validateStructVarFilterBothNoGeneId() throws Exception { } @Test + @WithMockUser public void validateStructVarFilterBothGeneIdAndSpecialValueNull() throws Exception { when(studyViewFilterApplier.apply(any())).thenReturn(filteredSampleIdentifiers); @@ -1068,7 +1193,7 @@ public void validateStructVarFilterBothGeneIdAndSpecialValueNull() throws Except structuralVariantFilter.setStructVarQueries(Arrays.asList(Arrays.asList(structVarFilterQuery))); studyViewFilter.setStructuralVariantFilters(Arrays.asList(structuralVariantFilter)); - mockMvc.perform(MockMvcRequestBuilders.post("/filtered-samples/fetch") + mockMvc.perform(MockMvcRequestBuilders.post("/api/filtered-samples/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) diff --git a/web/src/test/java/org/cbioportal/web/TreatmentControllerTest.java b/src/test/java/org/cbioportal/web/TreatmentControllerTest.java similarity index 87% rename from web/src/test/java/org/cbioportal/web/TreatmentControllerTest.java rename to src/test/java/org/cbioportal/web/TreatmentControllerTest.java index ac437d90c7e..85ba345b6fb 100644 --- a/web/src/test/java/org/cbioportal/web/TreatmentControllerTest.java +++ b/src/test/java/org/cbioportal/web/TreatmentControllerTest.java @@ -1,62 +1,57 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + +import com.fasterxml.jackson.databind.ObjectMapper; import java.util.Arrays; import java.util.List; - import org.cbioportal.model.PatientTreatmentRow; import org.cbioportal.model.SampleTreatmentRow; import org.cbioportal.model.TemporalRelation; import org.cbioportal.service.TreatmentService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.SampleIdentifier; import org.cbioportal.web.parameter.StudyViewFilter; import org.cbioportal.web.util.StudyViewFilterApplier; -import org.junit.Before; +import org.cbioportal.web.util.StudyViewFilterUtil; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import com.fasterxml.jackson.databind.ObjectMapper; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {TreatmentController.class, TestConfig.class}) public class TreatmentControllerTest { + private final List sampleIdentifiers; private final List studies; private final StudyViewFilter studyViewFilter; private ObjectMapper objectMapper = new ObjectMapper(); - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private StudyViewFilterApplier studyViewFilterApplier; + + @MockBean + private StudyViewFilterUtil studyViewFilterUtil; - @Autowired + @MockBean private TreatmentService treatmentService; + @Autowired private MockMvc mockMvc; - - @Before - public void setUp() throws Exception { - Mockito.reset(treatmentService); - Mockito.reset(studyViewFilterApplier); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - + public TreatmentControllerTest() { SampleIdentifier sampleIdentifier = new SampleIdentifier(); String STUDY_A = "study_0"; @@ -78,6 +73,7 @@ public TreatmentControllerTest() { } @Test + @WithMockUser public void getAllPatientTreatments() throws Exception { Mockito .when(studyViewFilterApplier.apply(Mockito.any())) @@ -92,7 +88,7 @@ public void getAllPatientTreatments() throws Exception { .thenReturn(treatmentRows); mockMvc.perform(MockMvcRequestBuilders.post( - "/treatments/patient") + "/api/treatments/patient").with(csrf()) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -103,6 +99,7 @@ public void getAllPatientTreatments() throws Exception { } @Test + @WithMockUser public void getAllSampleTreatments() throws Exception { Mockito .when(studyViewFilterApplier.apply(Mockito.any())) @@ -119,7 +116,7 @@ public void getAllSampleTreatments() throws Exception { .thenReturn(sampleTreatmentRows); mockMvc.perform(MockMvcRequestBuilders.post( - "/treatments/sample") + "/api/treatments/sample").with(csrf()) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studyViewFilter))) .andExpect(MockMvcResultMatchers.status().isOk()) @@ -138,6 +135,7 @@ public void getAllSampleTreatments() throws Exception { } @Test + @WithMockUser public void getContainsTreatmentData() throws Exception { List studies = Arrays.asList("study_0", "study_1"); Mockito @@ -148,7 +146,7 @@ public void getContainsTreatmentData() throws Exception { .when(treatmentService.containsTreatmentData(Mockito.anyList(), Mockito.any())) .thenReturn(true); - mockMvc.perform(MockMvcRequestBuilders.post("/treatments/display-patient") + mockMvc.perform(MockMvcRequestBuilders.post("/api/treatments/display-patient").with(csrf()) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(studies))) .andExpect(MockMvcResultMatchers.status().isOk()) diff --git a/web/src/test/java/org/cbioportal/web/VariantCountControllerTest.java b/src/test/java/org/cbioportal/web/VariantCountControllerTest.java similarity index 87% rename from web/src/test/java/org/cbioportal/web/VariantCountControllerTest.java rename to src/test/java/org/cbioportal/web/VariantCountControllerTest.java index 54da683a08a..34a0f8753f2 100644 --- a/web/src/test/java/org/cbioportal/web/VariantCountControllerTest.java +++ b/src/test/java/org/cbioportal/web/VariantCountControllerTest.java @@ -1,34 +1,33 @@ package org.cbioportal.web; +import static org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.csrf; + + import com.fasterxml.jackson.databind.ObjectMapper; +import java.util.ArrayList; +import java.util.List; import org.cbioportal.model.VariantCount; import org.cbioportal.service.VariantCountService; +import org.cbioportal.web.config.TestConfig; import org.cbioportal.web.parameter.VariantCountIdentifier; import org.hamcrest.Matchers; -import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mockito; import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; +import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest; +import org.springframework.boot.test.mock.mockito.MockBean; import org.springframework.http.MediaType; +import org.springframework.security.test.context.support.WithMockUser; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; import org.springframework.test.web.servlet.MockMvc; import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; @RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration +@WebMvcTest +@ContextConfiguration(classes = {VariantCountController.class, TestConfig.class}) public class VariantCountControllerTest { private static final String TEST_MOLECULAR_PROFILE_STABLE_ID = "test_molecular_profile_stable_id"; @@ -43,29 +42,16 @@ public class VariantCountControllerTest { private static final int TEST_NUMBER_OF_SAMPLES_WITH_MUTATION_IN_GENE_2 = 8; private static final int TEST_NUMBER_OF_SAMPLES_WITH_KEYWORD_2 = 2; - @Autowired - private WebApplicationContext wac; - - @Autowired + @MockBean private VariantCountService variantCountService; private ObjectMapper objectMapper = new ObjectMapper(); + @Autowired private MockMvc mockMvc; - @Bean - public VariantCountService variantCountService() { - return Mockito.mock(VariantCountService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(variantCountService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - @Test + @WithMockUser public void getVariantCounts() throws Exception { List variantCountList = new ArrayList<>(); @@ -100,7 +86,7 @@ public void getVariantCounts() throws Exception { variantCountIdentifiers.add(variantCountIdentifier2); mockMvc.perform(MockMvcRequestBuilders - .post("/molecular-profiles/test_molecular_profile_id/variant-counts/fetch") + .post("/api/molecular-profiles/test_molecular_profile_id/variant-counts/fetch").with(csrf()) .accept(MediaType.APPLICATION_JSON) .contentType(MediaType.APPLICATION_JSON) .content(objectMapper.writeValueAsString(variantCountIdentifiers))) diff --git a/web/src/test/java/org/cbioportal/web/config/CacheMapUtilConfig.java b/src/test/java/org/cbioportal/web/config/CacheMapUtilConfig.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/config/CacheMapUtilConfig.java rename to src/test/java/org/cbioportal/web/config/CacheMapUtilConfig.java diff --git a/web/src/test/java/org/cbioportal/web/config/DataAccessTokenControllerConfig.java b/src/test/java/org/cbioportal/web/config/DataAccessTokenControllerConfig.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/config/DataAccessTokenControllerConfig.java rename to src/test/java/org/cbioportal/web/config/DataAccessTokenControllerConfig.java diff --git a/src/test/java/org/cbioportal/web/config/DataAccessTokenControllerTestConfig.java b/src/test/java/org/cbioportal/web/config/DataAccessTokenControllerTestConfig.java new file mode 100644 index 00000000000..484ab71b742 --- /dev/null +++ b/src/test/java/org/cbioportal/web/config/DataAccessTokenControllerTestConfig.java @@ -0,0 +1,70 @@ +package org.cbioportal.web.config; + +import org.springframework.boot.test.context.TestConfiguration; +import org.springframework.context.annotation.Bean; +import org.springframework.security.authentication.AuthenticationManager; +import org.springframework.security.config.annotation.web.builders.HttpSecurity; +import org.springframework.security.config.annotation.web.configurers.AbstractHttpConfigurer; +import org.springframework.security.core.userdetails.User; +import org.springframework.security.core.userdetails.UserDetails; +import org.springframework.security.crypto.password.NoOpPasswordEncoder; +import org.springframework.security.provisioning.InMemoryUserDetailsManager; +import org.springframework.security.web.SecurityFilterChain; +import org.springframework.security.web.authentication.UsernamePasswordAuthenticationFilter; + +@TestConfiguration +public class DataAccessTokenControllerTestConfig { + + @Bean + protected SecurityFilterChain filterChain(HttpSecurity http) throws Exception { + http.authorizeHttpRequests((authz) -> authz + .anyRequest().authenticated()) + .apply(new TestFilterDsl()) + .and() + .httpBasic() + .authenticationEntryPoint(restAuthenticationEntryPoint()); + return http.build(); + } + + @Bean + public InMemoryUserDetailsManager userDetailsService() { + UserDetails user = User + .withUsername("MOCK_USER") + .password(noopPasswordEncoder().encode("MOCK_PASSWORD")) + .roles("PLACEHOLDER_ROLE") + .build(); + return new InMemoryUserDetailsManager(user); + } + + @Bean + public static NoOpPasswordEncoder noopPasswordEncoder() { + return (NoOpPasswordEncoder) NoOpPasswordEncoder.getInstance(); + } + + private class TestFilterDsl extends AbstractHttpConfigurer { + @Override + public void configure(HttpSecurity http) { + AuthenticationManager authenticationManager = http.getSharedObject(AuthenticationManager.class); + UsernamePasswordAuthenticationFilter filter = + new UsernamePasswordAuthenticationFilter(); + filter.setPostOnly(false); + filter.setFilterProcessesUrl("/j_spring_security_check"); + filter.setUsernameParameter("j_username"); + filter.setPasswordParameter("j_password"); + filter.setAuthenticationManager(authenticationManager); + filter.setAuthenticationSuccessHandler(tokenAuthenticationSuccessHandler()); + http.addFilter(filter); + } + } + + @Bean + public RestAuthenticationEntryPoint restAuthenticationEntryPoint() { + return new RestAuthenticationEntryPoint(); + } + + @Bean + public TokenAuthenticationSuccessHandler tokenAuthenticationSuccessHandler() { + return new TokenAuthenticationSuccessHandler(); + } + +} diff --git a/src/test/java/org/cbioportal/web/config/RestAuthenticationEntryPoint.java b/src/test/java/org/cbioportal/web/config/RestAuthenticationEntryPoint.java new file mode 100644 index 00000000000..ee90a9b3549 --- /dev/null +++ b/src/test/java/org/cbioportal/web/config/RestAuthenticationEntryPoint.java @@ -0,0 +1,54 @@ +/* + * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. + * + * This library is distributed in the hope that it will be useful, but WITHOUT + * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS + * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder + * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no + * obligations to provide maintenance, support, updates, enhancements or + * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be + * liable to any party for direct, indirect, special, incidental or + * consequential damages, including lost profits, arising out of the use of this + * software and its documentation, even if Memorial Sloan-Kettering Cancer + * Center has been advised of the possibility of such damage. + */ + +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . +*/ + +package org.cbioportal.web.config; + +import java.io.IOException; + + +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.springframework.security.core.AuthenticationException; +import org.springframework.security.web.AuthenticationEntryPoint; +import org.springframework.stereotype.Component; + +@Component +public class RestAuthenticationEntryPoint implements AuthenticationEntryPoint { + + @Override + public void commence(HttpServletRequest request, HttpServletResponse response, + AuthenticationException authException ) throws IOException{ + response.sendError( HttpServletResponse.SC_UNAUTHORIZED, "Unauthorized" ); + } + + +} diff --git a/src/test/java/org/cbioportal/web/config/TestConfig.java b/src/test/java/org/cbioportal/web/config/TestConfig.java new file mode 100644 index 00000000000..dd4fa4b3a21 --- /dev/null +++ b/src/test/java/org/cbioportal/web/config/TestConfig.java @@ -0,0 +1,55 @@ +package org.cbioportal.web.config; + +import org.cbioportal.persistence.cachemaputil.CacheMapUtil; +import org.cbioportal.web.error.GlobalExceptionHandler; +import org.cbioportal.web.util.InvolvedCancerStudyExtractorInterceptor; +import org.cbioportal.web.util.UniqueKeyExtractor; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.context.TestConfiguration; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.context.annotation.Bean; +import org.springframework.stereotype.Component; +import org.springframework.web.servlet.HandlerInterceptor; +import org.springframework.web.servlet.config.annotation.InterceptorRegistry; +import org.springframework.web.servlet.config.annotation.WebMvcConfigurer; + +@TestConfiguration +public class TestConfig { + + // -- configure preauthorize security + @MockBean(name = "staticRefCacheMapUtil") + private CacheMapUtil cacheMapUtil; + + @MockBean + private UniqueKeyExtractor uniqueKeyExtractor; + + @Bean + public InvolvedCancerStudyExtractorInterceptor involvedCancerStudyExtractorInterceptor() { + return new InvolvedCancerStudyExtractorInterceptor(); + } + + @Component + public class InterceptorAppConfig implements WebMvcConfigurer { + + @Autowired + private HandlerInterceptor involvedCancerStudyExtractorInterceptor; + + @Override + public void addInterceptors(InterceptorRegistry registry) { + registry.addInterceptor(involvedCancerStudyExtractorInterceptor) + .addPathPatterns("/api/**"); + } + } + + // -- register mixins + @Bean + public CustomObjectMapper customObjectMapper() { + return new CustomObjectMapper(); + } + + // -- handle exceptions + @Bean + public GlobalExceptionHandler globalExceptionHandler() { + return new GlobalExceptionHandler(); + } +} diff --git a/src/test/java/org/cbioportal/web/config/TokenAuthenticationSuccessHandler.java b/src/test/java/org/cbioportal/web/config/TokenAuthenticationSuccessHandler.java new file mode 100644 index 00000000000..4fdadbc0c13 --- /dev/null +++ b/src/test/java/org/cbioportal/web/config/TokenAuthenticationSuccessHandler.java @@ -0,0 +1,53 @@ +/* + * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. + * + * This library is distributed in the hope that it will be useful, but WITHOUT + * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS + * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder + * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no + * obligations to provide maintenance, support, updates, enhancements or + * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be + * liable to any party for direct, indirect, special, incidental or + * consequential damages, including lost profits, arising out of the use of this + * software and its documentation, even if Memorial Sloan-Kettering Cancer + * Center has been advised of the possibility of such damage. + */ + +/* + * This file is part of cBioPortal. + * + * cBioPortal is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . +*/ + +package org.cbioportal.web.config; + + +import jakarta.servlet.http.HttpServletRequest; +import jakarta.servlet.http.HttpServletResponse; +import org.springframework.security.core.Authentication; +import org.springframework.security.web.authentication.AuthenticationSuccessHandler; + +import java.io.IOException; + +public class TokenAuthenticationSuccessHandler implements AuthenticationSuccessHandler { + + @Override + public void onAuthenticationSuccess(HttpServletRequest request, HttpServletResponse response, Authentication authentication) throws IOException { + response.setStatus(HttpServletResponse.SC_OK); + response.getWriter().write("Authentication successful"); + response.getWriter().flush(); + // We do not need to do anything extra on REST authentication success, because there is no page to redirect to + } + +} diff --git a/web/src/test/java/org/cbioportal/web/util/AlterationFilterMockitoArgumentMatcher.java b/src/test/java/org/cbioportal/web/util/AlterationFilterMockitoArgumentMatcher.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/AlterationFilterMockitoArgumentMatcher.java rename to src/test/java/org/cbioportal/web/util/AlterationFilterMockitoArgumentMatcher.java diff --git a/web/src/test/java/org/cbioportal/web/util/ClinicalDataBinUtilTest.java b/src/test/java/org/cbioportal/web/util/ClinicalDataBinUtilTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/ClinicalDataBinUtilTest.java rename to src/test/java/org/cbioportal/web/util/ClinicalDataBinUtilTest.java diff --git a/web/src/test/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtilTest.java b/src/test/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtilTest.java similarity index 99% rename from web/src/test/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtilTest.java rename to src/test/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtilTest.java index 6f051096c61..cc4cc5cf5d7 100644 --- a/web/src/test/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtilTest.java +++ b/src/test/java/org/cbioportal/web/util/ClinicalDataEnrichmentUtilTest.java @@ -19,7 +19,6 @@ import org.junit.runner.RunWith; import org.mockito.InjectMocks; import org.mockito.Mock; -import org.mockito.Mockito; import org.mockito.Spy; import org.mockito.junit.MockitoJUnitRunner; diff --git a/web/src/test/java/org/cbioportal/web/util/DataBinHelperTest.java b/src/test/java/org/cbioportal/web/util/DataBinHelperTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/DataBinHelperTest.java rename to src/test/java/org/cbioportal/web/util/DataBinHelperTest.java diff --git a/web/src/test/java/org/cbioportal/web/util/DataBinnerMocker.java b/src/test/java/org/cbioportal/web/util/DataBinnerMocker.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/DataBinnerMocker.java rename to src/test/java/org/cbioportal/web/util/DataBinnerMocker.java diff --git a/web/src/test/java/org/cbioportal/web/util/DataBinnerTest.java b/src/test/java/org/cbioportal/web/util/DataBinnerTest.java similarity index 98% rename from web/src/test/java/org/cbioportal/web/util/DataBinnerTest.java rename to src/test/java/org/cbioportal/web/util/DataBinnerTest.java index 590ae85c8e6..b6fe1f81688 100644 --- a/web/src/test/java/org/cbioportal/web/util/DataBinnerTest.java +++ b/src/test/java/org/cbioportal/web/util/DataBinnerTest.java @@ -1,5 +1,14 @@ package org.cbioportal.web.util; +import java.math.BigDecimal; +import java.math.MathContext; +import java.math.RoundingMode; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.Map; +import java.util.stream.Collectors; +import java.util.stream.Stream; import static org.cbioportal.web.parameter.DataBinFilter.*; @@ -8,6 +17,8 @@ import org.cbioportal.model.Binnable; import org.cbioportal.model.ClinicalData; import org.cbioportal.model.DataBin; +import org.cbioportal.service.GeneService; +import org.cbioportal.service.util.MolecularProfileUtil; import org.cbioportal.web.parameter.BinsGeneratorConfig; import org.cbioportal.web.parameter.ClinicalDataBinFilter; import org.cbioportal.web.parameter.ClinicalDataType; @@ -15,49 +26,43 @@ import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.boot.test.mock.mockito.MockBean; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; import org.mockito.InjectMocks; import org.mockito.MockitoAnnotations; import org.mockito.Spy; import org.mockito.internal.matchers.apachecommons.ReflectionEquals; import org.mockito.junit.MockitoJUnitRunner; -import java.math.BigDecimal; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; -import java.util.Map; -import java.util.stream.Collectors; -import java.util.stream.Stream; - -@RunWith(MockitoJUnitRunner.class) +@RunWith(SpringJUnit4ClassRunner.class) +@SpringBootTest +@ContextConfiguration(classes = { + DataBinner.class, + DataBinHelper.class, + DiscreteDataBinner.class, + LogScaleDataBinner.class, + LinearDataBinner.class, + ScientificSmallDataBinner.class, + StudyViewFilterUtil.class + }) public class DataBinnerTest { + private Map mockData; - @InjectMocks + + @Autowired private DataBinner dataBinner; - @Spy - @InjectMocks + + @Autowired private StudyViewFilterUtil studyViewFilterUtil; - @Spy - @InjectMocks - private DataBinHelper dataBinHelper; - @Spy - @InjectMocks - private DiscreteDataBinner discreteDataBinner; - @Spy - @InjectMocks - private LinearDataBinner linearDataBinner; - @Spy - @InjectMocks - private ScientificSmallDataBinner scientificSmallDataBinner; - @Spy - @InjectMocks - private LogScaleDataBinner logScaleDataBinner; - @Before - public void setup() { - mockData = DataBinnerMocker.mockData(); - MockitoAnnotations.initMocks(this); - } + @MockBean + private MolecularProfileUtil molecularProfileUtil; + + @MockBean + private GeneService geneService; private List getCaseIds(List unfilteredClinicalData, boolean getPatientIds) { return unfilteredClinicalData @@ -67,6 +72,11 @@ private List getCaseIds(List unfilteredClinicalData, boolean g .collect(Collectors.toList()); } + @Before + public void setup() { + mockData = DataBinnerMocker.mockData(); + } + @Test public void testLinearDataBinner() { String studyId = "blca_tcga"; @@ -77,7 +87,7 @@ public void testLinearDataBinner() { List clinicalData = mockClinicalData(attributeId, studyId, values); List patientIds = getCaseIds(clinicalData, true); - + List dataBins = dataBinner.calculateDataBins(clinicalDataBinFilter, ClinicalDataType.PATIENT, clinicalData, patientIds); Assert.assertEquals(11, dataBins.size()); @@ -377,7 +387,7 @@ public void testLinearDataBinnerWithNumberOfPetOrPetCtScans() { clinicalDataBinFilter, ClinicalDataType.PATIENT, clinicalData, patientIds); Assert.assertEquals(4, dataBins.size()); - + Assert.assertEquals("<=", dataBins.get(0).getSpecialValue()); Assert.assertEquals(1, dataBins.get(0).getEnd().intValue()); @@ -390,7 +400,7 @@ public void testLinearDataBinnerWithNumberOfPetOrPetCtScans() { Assert.assertEquals(">", dataBins.get(3).getSpecialValue()); Assert.assertEquals(3, dataBins.get(3).getStart().intValue()); } - + @Test public void testLinearDataBinnerWithNumberOfBoneScans() { String studyId = "genie"; @@ -420,7 +430,7 @@ public void testLinearDataBinnerWithNumberOfBoneScans() { clinicalDataBinFilter, ClinicalDataType.PATIENT, clinicalData, patientIds, 5); Assert.assertEquals(2, dataBinsWithThreshold5.size()); - + Assert.assertEquals(0, dataBinsWithThreshold5.get(0).getStart().intValue()); Assert.assertEquals(0, dataBinsWithThreshold5.get(0).getEnd().intValue()); @@ -428,7 +438,7 @@ public void testLinearDataBinnerWithNumberOfBoneScans() { Assert.assertEquals(0, dataBinsWithThreshold5.get(1).getStart().intValue()); Assert.assertNull(dataBinsWithThreshold5.get(1).getEnd()); } - + @Test public void testLinearDataBinnerWithAgeAtWhichSequencingWasReported() { String studyId = "genie_public"; @@ -437,7 +447,7 @@ public void testLinearDataBinnerWithAgeAtWhichSequencingWasReported() { List clinicalData = mockClinicalData(attributeId, studyId, values); List patientIds = getCaseIds(clinicalData, true); - + ClinicalDataBinFilter clinicalDataBinFilter = new ClinicalDataBinFilter(); clinicalDataBinFilter.setAttributeId(attributeId); clinicalDataBinFilter.setBinMethod(BinMethod.CUSTOM); @@ -467,7 +477,7 @@ public void testLinearDataBinnerWithAgeAtWhichSequencingWasReported() { Assert.assertEquals("Unknown", dataBins1.get(4).getSpecialValue()); Assert.assertEquals(10, dataBins1.get(4).getCount().intValue()); - + clinicalDataBinFilter.setCustomBins( Stream.of(40.0, 55.0).map(BigDecimal::valueOf).collect(Collectors.toList()) @@ -518,7 +528,7 @@ public void testLinearDataBinnerWithAgeAtWhichSequencingWasReported() { Assert.assertEquals("Unknown", dataBins3.get(3).getSpecialValue()); Assert.assertEquals(10, dataBins3.get(3).getCount().intValue()); } - + @Test public void testLinearDataBinnerWithPediatricAge() { String studyId = "skcm_broad"; @@ -1043,11 +1053,11 @@ public void testScientificDataBinner() { Assert.assertEquals(16, dataBins.get(1).getCount().intValue()); Assert.assertEquals(new BigDecimal("1.0e-6"), dataBins.get(2).getStart()); - Assert.assertEquals(new BigDecimal("1.0e-5"), dataBins.get(2).getEnd()); + Assert.assertEquals(new BigDecimal("1.0e-5").compareTo(dataBins.get(2).getEnd().round(new MathContext(5, RoundingMode.CEILING))), 0); Assert.assertEquals(32, dataBins.get(2).getCount().intValue()); Assert.assertEquals(">", dataBins.get(3).getSpecialValue()); - Assert.assertEquals(new BigDecimal("1.0e-5"), dataBins.get(3).getStart()); + Assert.assertEquals(new BigDecimal("1.0e-5").compareTo(dataBins.get(3).getStart().round(new MathContext(5, RoundingMode.CEILING))), 0); Assert.assertEquals(1, dataBins.get(3).getCount().intValue()); Assert.assertEquals("NA", dataBins.get(4).getSpecialValue()); diff --git a/web/src/test/java/org/cbioportal/web/util/SelectMockitoArgumentMatcher.java b/src/test/java/org/cbioportal/web/util/SelectMockitoArgumentMatcher.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/SelectMockitoArgumentMatcher.java rename to src/test/java/org/cbioportal/web/util/SelectMockitoArgumentMatcher.java diff --git a/web/src/test/java/org/cbioportal/web/util/StudyViewFilterApplierTest.java b/src/test/java/org/cbioportal/web/util/StudyViewFilterApplierTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/StudyViewFilterApplierTest.java rename to src/test/java/org/cbioportal/web/util/StudyViewFilterApplierTest.java diff --git a/web/src/test/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplierTest.java b/src/test/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplierTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplierTest.java rename to src/test/java/org/cbioportal/web/util/appliers/PatientTreatmentFilterApplierTest.java diff --git a/web/src/test/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplierTest.java b/src/test/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplierTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplierTest.java rename to src/test/java/org/cbioportal/web/util/appliers/SampleTreatmentFilterApplierTest.java diff --git a/web/src/test/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplierTest.java b/src/test/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplierTest.java similarity index 100% rename from web/src/test/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplierTest.java rename to src/test/java/org/cbioportal/web/util/appliers/StructuralVariantSubFilterApplierTest.java diff --git a/web/src/test/resources/categorical-custom-dataset-filter-applier.json b/src/test/resources/categorical-custom-dataset-filter-applier.json similarity index 100% rename from web/src/test/resources/categorical-custom-dataset-filter-applier.json rename to src/test/resources/categorical-custom-dataset-filter-applier.json diff --git a/src/test/resources/cgds-h2.sql b/src/test/resources/cgds-h2.sql new file mode 100644 index 00000000000..6ecf3d51560 --- /dev/null +++ b/src/test/resources/cgds-h2.sql @@ -0,0 +1,759 @@ +-- +-- Copyright (c) 2016 - 2022 Memorial Sloan Kettering Cancer Center. +-- +-- This library is distributed in the hope that it will be useful, but WITHOUT +-- ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS +-- FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder +-- is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no +-- obligations to provide maintenance, support, updates, enhancements or +-- modifications. In no event shall Memorial Sloan Kettering Cancer Center be +-- liable to any party for direct, indirect, special, incidental or +-- consequential damages, including lost profits, arising out of the use of this +-- software and its documentation, even if Memorial Sloan Kettering Cancer +-- Center has been advised of the possibility of such damage. +-- +-- This file is part of cBioPortal. +-- +-- cBioPortal is free software: you can redistribute it and/or modify +-- it under the terms of the GNU Affero General Public License as +-- published by the Free Software Foundation, either version 3 of the +-- License. +-- +-- This program is distributed in the hope that it will be useful, +-- but WITHOUT ANY WARRANTY; without even the implied warranty of +-- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +-- GNU Affero General Public License for more details. +-- +-- You should have received a copy of the GNU Affero General Public License +-- along with this program. If not, see . +-- ---------------------------------------------------------------------------- +-- +-- Database: `cgds` +-- +-- -------------------------------------------------------- +-- Database table schemas and version number +-- -------------------------------------------------------- +-- The order of the following DROP TABLE statements is +-- significant. If a table has a FOREIGN_KEY referring to +-- another table, then it should be dropped before the +-- other table is dropped. The approach taken here is to +-- order the CREATE TABLE statements so that refererenced +-- tables are created before referring tables. +-- DROP TABLE statements are here in the reverse order. +-- -------------------------------------------------------- + +DROP TABLE IF EXISTS `info`; +DROP TABLE IF EXISTS `clinical_event_data`; +DROP TABLE IF EXISTS `clinical_event`; +DROP TABLE IF EXISTS `pdb_uniprot_residue_mapping`; +DROP TABLE IF EXISTS `pdb_uniprot_alignment`; +DROP TABLE IF EXISTS `cosmic_mutation`; +DROP TABLE IF EXISTS `copy_number_seg_file`; +DROP TABLE IF EXISTS `copy_number_seg`; +DROP TABLE IF EXISTS `sample_cna_event`; +DROP TABLE IF EXISTS `cna_event`; +DROP TABLE IF EXISTS `gistic_to_gene`; +DROP TABLE IF EXISTS `gistic`; +DROP TABLE IF EXISTS `mut_sig`; +DROP TABLE IF EXISTS `clinical_attribute_meta`; +DROP TABLE IF EXISTS `clinical_sample`; +DROP TABLE IF EXISTS `clinical_patient`; +DROP TABLE IF EXISTS `resource_definition`; +DROP TABLE IF EXISTS `resource_sample`; +DROP TABLE IF EXISTS `resource_patient`; +DROP TABLE IF EXISTS `resource_study`; +DROP TABLE IF EXISTS `mutation_count_by_keyword`; +DROP TABLE IF EXISTS `allele_specific_copy_number`; +DROP TABLE IF EXISTS `mutation`; +DROP TABLE IF EXISTS `mutation_event`; +DROP TABLE IF EXISTS `structural_variant`; +DROP TABLE IF EXISTS `sample_profile`; +DROP TABLE IF EXISTS `gene_panel_list`; +DROP TABLE IF EXISTS `gene_panel`; +DROP TABLE IF EXISTS `genetic_profile_samples`; +DROP TABLE IF EXISTS `genetic_alteration`; +DROP TABLE IF EXISTS `genetic_profile_link`; +DROP TABLE IF EXISTS `alteration_driver_annotation`; +DROP TABLE IF EXISTS `genetic_profile`; +DROP TABLE IF EXISTS `gene_alias`; +DROP TABLE IF EXISTS `geneset_gene`; +DROP TABLE IF EXISTS `reference_genome_gene`; +DROP TABLE IF EXISTS `gene`; +DROP TABLE IF EXISTS `sample_list_list`; +DROP TABLE IF EXISTS `sample_list`; +DROP TABLE IF EXISTS `sample`; +DROP TABLE IF EXISTS `patient`; +DROP TABLE IF EXISTS `authorities`; +DROP TABLE IF EXISTS `data_access_tokens`; +DROP TABLE IF EXISTS `users`; +DROP TABLE IF EXISTS `cancer_study_tags`; +DROP TABLE IF EXISTS `cancer_study`; +DROP TABLE IF EXISTS `type_of_cancer`; +DROP TABLE IF EXISTS `geneset_hierarchy_leaf`; +DROP TABLE IF EXISTS `geneset_hierarchy_node`; +DROP TABLE IF EXISTS `geneset`; +DROP TABLE IF EXISTS `generic_entity_properties`; +DROP TABLE IF EXISTS `genetic_entity`; +DROP TABLE IF EXISTS `reference_genome`; + +-- -------------------------------------------------------- +CREATE TABLE `type_of_cancer` ( + `TYPE_OF_CANCER_ID` varchar(63) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DEDICATED_COLOR` char(31) NOT NULL, + `SHORT_NAME` varchar(127), + `PARENT` varchar(63), + PRIMARY KEY (`TYPE_OF_CANCER_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `reference_genome` ( + `REFERENCE_GENOME_ID` int(4) NOT NULL AUTO_INCREMENT, + `SPECIES` varchar(64) NOT NULL, + `NAME` varchar(64) NOT NULL, + `BUILD_NAME` varchar(64) NOT NULL, + `GENOME_SIZE` bigint(20) NULL, + `URL` varchar(256) NOT NULL, + `RELEASE_DATE` datetime DEFAULT NULL, + PRIMARY KEY (`REFERENCE_GENOME_ID`), + UNIQUE INDEX `BUILD_NAME_UNIQUE` (`BUILD_NAME` ASC) +); + +-- -------------------------------------------------------- +CREATE TABLE `cancer_study` ( + `CANCER_STUDY_ID` int(11) NOT NULL auto_increment, + `CANCER_STUDY_IDENTIFIER` varchar(255), + `TYPE_OF_CANCER_ID` varchar(63) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DESCRIPTION` varchar(1024) NOT NULL, + `PUBLIC` BOOLEAN NOT NULL, + `PMID` varchar(1024) DEFAULT NULL, + `CITATION` varchar(200) DEFAULT NULL, + `GROUPS` varchar(200) DEFAULT NULL, + `STATUS` int(1) DEFAULT NULL, + `IMPORT_DATE` datetime DEFAULT NULL, + `REFERENCE_GENOME_ID` int(4) DEFAULT 1, + PRIMARY KEY (`CANCER_STUDY_ID`), + UNIQUE (`CANCER_STUDY_IDENTIFIER`), + FOREIGN KEY (`TYPE_OF_CANCER_ID`) REFERENCES `type_of_cancer` (`TYPE_OF_CANCER_ID`), + FOREIGN KEY (`REFERENCE_GENOME_ID`) REFERENCES `reference_genome` (`REFERENCE_GENOME_ID`) ON DELETE RESTRICT +); + +-- -------------------------------------------------------- +CREATE TABLE `cancer_study_tags` ( + `CANCER_STUDY_ID` int(11) NOT NULL, + `TAGS` text NOT NULL, + PRIMARY KEY (`CANCER_STUDY_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `users` ( + `EMAIL` varchar(128) NOT NULL, + `NAME` varchar(255) NOT NULL, + `ENABLED` BOOLEAN NOT NULL, + PRIMARY KEY (`EMAIL`) +); + +-- -------------------------------------------------------- +CREATE TABLE `authorities` ( + `EMAIL` varchar(128) NOT NULL, + `AUTHORITY` varchar(255) NOT NULL +); + +-- -------------------------------------------------------- +CREATE TABLE `patient` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(50) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(63) NOT NULL, + `SAMPLE_TYPE` varchar(255) NOT NULL, + `PATIENT_ID` int(11) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`), + FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_list` ( + `LIST_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(255) NOT NULL, + `CATEGORY` varchar(255) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DESCRIPTION` mediumtext, + PRIMARY KEY (`LIST_ID`), + UNIQUE (`STABLE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_list_list` ( + `LIST_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + PRIMARY KEY (`LIST_ID`,`SAMPLE_ID`), + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- + +CREATE TABLE `genetic_entity` ( + `ID` int(11) NOT NULL AUTO_INCREMENT, + `ENTITY_TYPE` varchar(45) NOT NULL, + `STABLE_ID` varchar(255) DEFAULT NULL, + PRIMARY KEY (`ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `gene` ( + `ENTREZ_GENE_ID` int(11) NOT NULL, + `HUGO_GENE_SYMBOL` varchar(255) NOT NULL, + `GENETIC_ENTITY_ID` int(11) NOT NULL, + `TYPE` varchar(50), + PRIMARY KEY (`ENTREZ_GENE_ID`), + UNIQUE KEY `GENETIC_ENTITY_ID_UNIQUE` (`GENETIC_ENTITY_ID`), + KEY `HUGO_GENE_SYMBOL` (`HUGO_GENE_SYMBOL`), + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `gene_alias` ( + `ENTREZ_GENE_ID` int(11) NOT NULL, + `GENE_ALIAS` varchar(255) NOT NULL, + PRIMARY KEY (`ENTREZ_GENE_ID`,`GENE_ALIAS`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset` ( + `ID` INT(11) NOT NULL auto_increment, + `GENETIC_ENTITY_ID` INT NOT NULL, + `EXTERNAL_ID` VARCHAR(200) NOT NULL, + `NAME` VARCHAR(200) NOT NULL, + `DESCRIPTION` VARCHAR(300) NOT NULL, + `REF_LINK` TEXT, + PRIMARY KEY (`ID`), + UNIQUE INDEX `NAME_UNIQUE` (`NAME` ASC), + UNIQUE INDEX `EXTERNAL_ID_COLL_UNIQUE` (`EXTERNAL_ID` ASC), + UNIQUE INDEX `GENESET_GENETIC_ENTITY_ID_UNIQUE` (`GENETIC_ENTITY_ID` ASC), + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset_gene` ( + `GENESET_ID` INT(11) NOT NULL, + `ENTREZ_GENE_ID` INT(11) NOT NULL, + PRIMARY KEY (`GENESET_ID`, `ENTREZ_GENE_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENESET_ID`) REFERENCES `geneset` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset_hierarchy_node` ( + `NODE_ID` BIGINT(20) NOT NULL auto_increment, + `NODE_NAME` VARCHAR(200) NOT NULL, + `PARENT_ID` BIGINT NULL DEFAULT NULL, + PRIMARY KEY (`NODE_ID`), + UNIQUE INDEX `NODE_NAME_UNIQUE` (`NODE_NAME` ASC, `PARENT_ID` ASC) +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset_hierarchy_leaf` ( + `NODE_ID` BIGINT NOT NULL, + `GENESET_ID` INT NOT NULL, + PRIMARY KEY (`NODE_ID`, `GENESET_ID`), + FOREIGN KEY (`NODE_ID`) REFERENCES `geneset_hierarchy_node` (`NODE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENESET_ID`) REFERENCES `geneset` (`ID`) ON DELETE CASCADE +); + +-- ------------------------------------------------------ +CREATE TABLE `generic_entity_properties` ( + `ID` INT(11) NOT NULL auto_increment, + `GENETIC_ENTITY_ID` INT NOT NULL, + `NAME` varchar(255) NOT NULL, + `VALUE` varchar(5000) NOT NULL, + UNIQUE (`GENETIC_ENTITY_ID`, `NAME`), + PRIMARY KEY (`ID`), + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_profile` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL AUTO_INCREMENT, + `STABLE_ID` varchar(255) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + `GENETIC_ALTERATION_TYPE` varchar(255) NOT NULL, + `GENERIC_ASSAY_TYPE` varchar(255) DEFAULT NULL, + `DATATYPE` varchar(255) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DESCRIPTION` mediumtext, + `SHOW_PROFILE_IN_ANALYSIS_TAB` tinyint(1) NOT NULL, + `PIVOT_THRESHOLD` FLOAT DEFAULT NULL, + `SORT_ORDER` ENUM('ASC','DESC') DEFAULT NULL, + `PATIENT_LEVEL` boolean DEFAULT 0, + PRIMARY KEY (`GENETIC_PROFILE_ID`), + UNIQUE (`STABLE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_profile_link` ( + `REFERRING_GENETIC_PROFILE_ID` INT NOT NULL, + `REFERRED_GENETIC_PROFILE_ID` INT NOT NULL, + `REFERENCE_TYPE` VARCHAR(45) NULL, -- COMMENT 'Values: AGGREGATION (e.g. for GSVA) or STATISTIC (e.g. for Z-SCORES) + PRIMARY KEY (`REFERRING_GENETIC_PROFILE_ID`, `REFERRED_GENETIC_PROFILE_ID`), + FOREIGN KEY (`REFERRING_GENETIC_PROFILE_ID` ) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`REFERRED_GENETIC_PROFILE_ID` ) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE NO ACTION ON UPDATE NO ACTION +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_alteration` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `GENETIC_ENTITY_ID` int(11) NOT NULL, + `VALUES` longtext NOT NULL, + PRIMARY KEY (`GENETIC_PROFILE_ID`,`GENETIC_ENTITY_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_profile_samples` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `ORDERED_SAMPLE_LIST` longtext NOT NULL, + UNIQUE (`GENETIC_PROFILE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `gene_panel` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(255) NOT NULL, + `DESCRIPTION` mediumtext, + PRIMARY KEY (`INTERNAL_ID`), + UNIQUE (`STABLE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `gene_panel_list` ( + `INTERNAL_ID` int(11) NOT NULL, + `GENE_ID` int(11) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `GENE_ID`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `gene_panel` (`INTERNAL_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_profile` ( + `SAMPLE_ID` int(11) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `PANEL_ID` int(11) DEFAULT NULL, + UNIQUE KEY `UQ_SAMPLE_ID_GENETIC_PROFILE_ID` (`SAMPLE_ID`,`GENETIC_PROFILE_ID`), -- Constraint to allow each sample only once in each profile + KEY (`SAMPLE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE, + FOREIGN KEY (`PANEL_ID`) REFERENCES `gene_panel` (`INTERNAL_ID`) ON DELETE RESTRICT +); + +-- -------------------------------------------------------- +CREATE TABLE `structural_variant` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `SITE1_ENTREZ_GENE_ID` int(11), + `SITE1_ENSEMBL_TRANSCRIPT_ID` varchar(25), + `SITE1_CHROMOSOME` varchar(5), + `SITE1_REGION` varchar(25), + `SITE1_REGION_NUMBER` int(11), + `SITE1_CONTIG` varchar(100), + `SITE1_POSITION` int(11), + `SITE1_DESCRIPTION` varchar(255), + `SITE2_ENTREZ_GENE_ID` int(11), + `SITE2_ENSEMBL_TRANSCRIPT_ID` varchar(25), + `SITE2_CHROMOSOME` varchar(5), + `SITE2_REGION` varchar(25), + `SITE2_REGION_NUMBER` int(11), + `SITE2_CONTIG` varchar(100), + `SITE2_POSITION` int(11), + `SITE2_DESCRIPTION` varchar(255), + `SITE2_EFFECT_ON_FRAME` varchar(25), + `NCBI_BUILD` varchar(10), + `DNA_SUPPORT` varchar(3), + `RNA_SUPPORT` varchar(3), + `NORMAL_READ_COUNT` int(11), + `TUMOR_READ_COUNT` int(11), + `NORMAL_VARIANT_COUNT` int(11), + `TUMOR_VARIANT_COUNT` int(11), + `NORMAL_PAIRED_END_READ_COUNT` int(11), + `TUMOR_PAIRED_END_READ_COUNT` int(11), + `NORMAL_SPLIT_READ_COUNT` int(11), + `TUMOR_SPLIT_READ_COUNT` int(11), + `ANNOTATION` varchar(255), + `BREAKPOINT_TYPE` varchar(25), + `CONNECTION_TYPE` varchar(25), + `EVENT_INFO` varchar(255), + `CLASS` varchar(25), + `LENGTH` int(11), + `COMMENTS` varchar(255), + `SV_STATUS` varchar(25) NOT NULL DEFAULT 'SOMATIC' COMMENT 'GERMLINE or SOMATIC.', + `ANNOTATION_JSON` JSON, + PRIMARY KEY (`INTERNAL_ID`), + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SITE1_ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SITE2_ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `alteration_driver_annotation` ( + `ALTERATION_EVENT_ID` int(255) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `DRIVER_FILTER` VARCHAR(20), + `DRIVER_FILTER_ANNOTATION` VARCHAR(80), + `DRIVER_TIERS_FILTER` VARCHAR(50), + `DRIVER_TIERS_FILTER_ANNOTATION` VARCHAR(80), + PRIMARY KEY (`ALTERATION_EVENT_ID`, `GENETIC_PROFILE_ID`, `SAMPLE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE, + INDEX (`DRIVER_FILTER`), + INDEX (`DRIVER_TIERS_FILTER`) +) COMMENT='Alteration driver annotation'; + +-- -------------------------------------------------------- +CREATE TABLE `mutation_event` ( + `MUTATION_EVENT_ID` int(255) NOT NULL auto_increment, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `CHR` varchar(5), + `START_POSITION` bigint(20), + `END_POSITION` bigint(20), + `REFERENCE_ALLELE` text, + `TUMOR_SEQ_ALLELE` text, + `PROTEIN_CHANGE` varchar(255), + `MUTATION_TYPE` varchar(255) COMMENT 'e.g. Missense, Nonsence, etc.', + `NCBI_BUILD` varchar(10), + `STRAND` varchar(2), + `VARIANT_TYPE` varchar(15), + `DB_SNP_RS` varchar(25), + `DB_SNP_VAL_STATUS` varchar(255), + `REFSEQ_MRNA_ID` varchar(64), + `CODON_CHANGE` varchar(255), + `UNIPROT_ACCESSION` varchar(64), + `PROTEIN_POS_START` int(11), + `PROTEIN_POS_END` int(11), + `CANONICAL_TRANSCRIPT` boolean, + `KEYWORD` varchar(255) DEFAULT NULL COMMENT 'e.g. truncating, V200 Missense, E338del, ', + KEY (`KEYWORD`), + PRIMARY KEY (`MUTATION_EVENT_ID`), +-- Line removed for H2 compatibility : KEY `KEY_MUTATION_EVENT_DETAILS` (`CHR`, `START_POSITION`, `END_POSITION`, `TUMOR_SEQ_ALLELE`(240), `ENTREZ_GENE_ID`, `PROTEIN_CHANGE`, `MUTATION_TYPE`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + INDEX (`MUTATION_TYPE`) +) COMMENT='Mutation Data'; + +-- -------------------------------------------------------- +CREATE TABLE `mutation` ( + `MUTATION_EVENT_ID` int(255) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `CENTER` varchar(100), + `SEQUENCER` varchar(255), + `MUTATION_STATUS` varchar(25) COMMENT 'Germline, Somatic or LOH.', + `VALIDATION_STATUS` varchar(25), + `TUMOR_SEQ_ALLELE1` TEXT, + `TUMOR_SEQ_ALLELE2` TEXT, + `MATCHED_NORM_SAMPLE_BARCODE` varchar(255), + `MATCH_NORM_SEQ_ALLELE1` TEXT, + `MATCH_NORM_SEQ_ALLELE2` TEXT, + `TUMOR_VALIDATION_ALLELE1` TEXT, + `TUMOR_VALIDATION_ALLELE2` TEXT, + `MATCH_NORM_VALIDATION_ALLELE1` TEXT, + `MATCH_NORM_VALIDATION_ALLELE2` TEXT, + `VERIFICATION_STATUS` varchar(10), + `SEQUENCING_PHASE` varchar(100), + `SEQUENCE_SOURCE` varchar(255) NOT NULL, + `VALIDATION_METHOD` varchar(255), + `SCORE` varchar(100), + `BAM_FILE` varchar(255), + `TUMOR_ALT_COUNT` int(11), + `TUMOR_REF_COUNT` int(11), + `NORMAL_ALT_COUNT` int(11), + `NORMAL_REF_COUNT` int(11), + `AMINO_ACID_CHANGE` varchar(255), + `ANNOTATION_JSON` JSON, + UNIQUE KEY `UQ_MUTATION_EVENT_ID_GENETIC_PROFILE_ID_SAMPLE_ID` (`MUTATION_EVENT_ID`,`GENETIC_PROFILE_ID`,`SAMPLE_ID`), -- Constraint to block duplicated mutation entries + KEY (`GENETIC_PROFILE_ID`,`ENTREZ_GENE_ID`), + KEY (`GENETIC_PROFILE_ID`,`SAMPLE_ID`), + KEY (`GENETIC_PROFILE_ID`), + KEY (`ENTREZ_GENE_ID`), + KEY (`SAMPLE_ID`), + KEY (`MUTATION_EVENT_ID`), + FOREIGN KEY (`MUTATION_EVENT_ID`) REFERENCES `mutation_event` (`MUTATION_EVENT_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +) COMMENT='Mutation Data Details'; + +-- -------------------------------------------------------- +CREATE TABLE `mutation_count_by_keyword` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `KEYWORD` varchar(255) DEFAULT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `KEYWORD_COUNT` int NOT NULL, + `GENE_COUNT` int NOT NULL, + KEY (`GENETIC_PROFILE_ID`,`KEYWORD`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_patient` ( + `INTERNAL_ID` int(11) NOT NULL, + `ATTR_ID` varchar(255) NOT NULL, + `ATTR_VALUE` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `ATTR_ID`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_sample` ( + `INTERNAL_ID` int(11) NOT NULL, + `ATTR_ID` varchar(255) NOT NULL, + `ATTR_VALUE` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`,`ATTR_ID`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_attribute_meta` ( + `ATTR_ID` varchar(255) NOT NULL, + `DISPLAY_NAME` varchar(255) NOT NULL, + `DESCRIPTION` varchar(2048) NOT NULL, + `DATATYPE` varchar(255) NOT NULL COMMENT 'NUMBER, BOOLEAN, or STRING', + `PATIENT_ATTRIBUTE` BOOLEAN NOT NULL, + `PRIORITY` varchar(255) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + PRIMARY KEY (`ATTR_ID`,`CANCER_STUDY_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `mut_sig` ( + `CANCER_STUDY_ID` int(11) NOT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `RANK` int(11) NOT NULL, + `NumBasesCovered` int(11) NOT NULL, + `NumMutations` int(11) NOT NULL, + `P_VALUE` float NOT NULL, + `Q_VALUE` float NOT NULL, + PRIMARY KEY (`CANCER_STUDY_ID`, `ENTREZ_GENE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE, + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `gistic` ( + `GISTIC_ROI_ID` bigint(20) NOT NULL auto_increment, + `CANCER_STUDY_ID` int(11) NOT NULL, + `CHROMOSOME` int(11) NOT NULL, + `CYTOBAND` varchar(255) NOT NULL, + `WIDE_PEAK_START` int(11) NOT NULL, + `WIDE_PEAK_END` int(11) NOT NULL, + `Q_VALUE` double NOT NULL, + `AMP` tinyint(1) NOT NULL, + PRIMARY KEY (`GISTIC_ROI_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `gistic_to_gene` ( + `GISTIC_ROI_ID` bigint(20) NOT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + PRIMARY KEY(`GISTIC_ROI_ID`, `ENTREZ_GENE_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + FOREIGN KEY (`GISTIC_ROI_ID`) REFERENCES `gistic` (`GISTIC_ROI_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `cna_event` ( + `CNA_EVENT_ID` int(255) NOT NULL auto_increment, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `ALTERATION` tinyint NOT NULL, + PRIMARY KEY (`CNA_EVENT_ID`), + UNIQUE (`ENTREZ_GENE_ID`, `ALTERATION`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + INDEX (`ALTERATION`) +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_cna_event` ( + `CNA_EVENT_ID` int(255) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `ANNOTATION_JSON` JSON, + KEY (`GENETIC_PROFILE_ID`,`SAMPLE_ID`), + PRIMARY KEY (`CNA_EVENT_ID`, `SAMPLE_ID`, `GENETIC_PROFILE_ID`), + FOREIGN KEY (`CNA_EVENT_ID`) REFERENCES `cna_event` (`CNA_EVENT_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `copy_number_seg` ( + `SEG_ID` bigint(20) NOT NULL auto_increment, + `CANCER_STUDY_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `CHR` varchar(5) NOT NULL, + `START` int(11) NOT NULL, + `END` int(11) NOT NULL, + `NUM_PROBES` int(11) NOT NULL, + `SEGMENT_MEAN` double NOT NULL, + KEY (`CANCER_STUDY_ID`,`SAMPLE_ID`), + PRIMARY KEY (`SEG_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `copy_number_seg_file` ( + `SEG_FILE_ID` int(11) NOT NULL auto_increment, + `CANCER_STUDY_ID` int(11) NOT NULL, + `REFERENCE_GENOME_ID` varchar(10) NOT NULL, + `DESCRIPTION` varchar(255) NOT NULL, + `FILENAME` varchar(255) NOT NULL, + PRIMARY KEY(`SEG_FILE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `cosmic_mutation` ( + `COSMIC_MUTATION_ID` varchar(30) NOT NULL, + `CHR` varchar(5), + `START_POSITION` bigint(20), + `REFERENCE_ALLELE` varchar(255), + `TUMOR_SEQ_ALLELE` varchar(255), + `STRAND` varchar(2), + `CODON_CHANGE` varchar(255), + `ENTREZ_GENE_ID` int(11) NOT NULL, + `PROTEIN_CHANGE` varchar(255) NOT NULL, + `COUNT` int(11) NOT NULL, + `KEYWORD` varchar(50) DEFAULT NULL, + KEY (`KEYWORD`), + PRIMARY KEY (`COSMIC_MUTATION_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_event` ( + `CLINICAL_EVENT_ID` int NOT NULL auto_increment, + `PATIENT_ID` int(11) NOT NULL, + `START_DATE` int NOT NULL, + `STOP_DATE` int, + `EVENT_TYPE` varchar(20) NOT NULL, + PRIMARY KEY (`CLINICAL_EVENT_ID`), + KEY (`PATIENT_ID`, `EVENT_TYPE`), + FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_event_data` ( + `CLINICAL_EVENT_ID` int(255) NOT NULL, + `KEY` varchar(255) NOT NULL, + `VALUE` varchar(5000) NOT NULL, + FOREIGN KEY (`CLINICAL_EVENT_ID`) REFERENCES `clinical_event` (`CLINICAL_EVENT_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `reference_genome_gene` ( + `ENTREZ_GENE_ID` int(11) NOT NULL, + `REFERENCE_GENOME_ID` int(4) NOT NULL, + `CHR` varchar(5) DEFAULT NULL, + `CYTOBAND` varchar(64) DEFAULT NULL, + `START` bigint(20) DEFAULT NULL, + `END` bigint(20) DEFAULT NULL, + PRIMARY KEY (`ENTREZ_GENE_ID`,`REFERENCE_GENOME_ID`), + FOREIGN KEY (`REFERENCE_GENOME_ID`) REFERENCES `reference_genome` (`REFERENCE_GENOME_ID`) ON DELETE CASCADE, + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `data_access_tokens` ( + `TOKEN` varchar(50) NOT NULL, + `USERNAME` varchar(128) NOT NULL, + `EXPIRATION` datetime NOT NULL, + `CREATION` datetime NOT NULL, + PRIMARY KEY (`TOKEN`), + FOREIGN KEY (`USERNAME`) REFERENCES `users` (`EMAIL`) ON DELETE CASCADE +); +-- -------------------------------------------------------- +CREATE TABLE `allele_specific_copy_number` ( + `MUTATION_EVENT_ID` int(255) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `ASCN_INTEGER_COPY_NUMBER` int DEFAULT NULL, + `ASCN_METHOD` varchar(24) NOT NULL, + `CCF_EXPECTED_COPIES_UPPER` float DEFAULT NULL, + `CCF_EXPECTED_COPIES` float DEFAULT NULL, + `CLONAL` varchar(16) DEFAULT NULL, + `MINOR_COPY_NUMBER` int DEFAULT NULL, + `EXPECTED_ALT_COPIES` int DEFAULT NULL, + `TOTAL_COPY_NUMBER` int DEFAULT NULL, + UNIQUE KEY `UQ_ASCN_MUTATION_EVENT_ID_GENETIC_PROFILE_ID_SAMPLE_ID` (`MUTATION_EVENT_ID`,`GENETIC_PROFILE_ID`,`SAMPLE_ID`), -- Constraint to block duplicated mutation entries + FOREIGN KEY (`MUTATION_EVENT_ID`) REFERENCES `mutation_event` (`MUTATION_EVENT_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); +-- -------------------------------------------------------- +CREATE TABLE `info` ( + `DB_SCHEMA_VERSION` varchar(24), + `GENESET_VERSION` varchar(24) +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_definition` ( + `RESOURCE_ID` varchar(255) NOT NULL, + `DISPLAY_NAME` varchar(255) NOT NULL, + `DESCRIPTION` varchar(2048) DEFAULT NULL, + `RESOURCE_TYPE` ENUM('STUDY', 'PATIENT', 'SAMPLE') NOT NULL, + `OPEN_BY_DEFAULT` BOOLEAN DEFAULT 0, + `PRIORITY` int(11) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + PRIMARY KEY (`RESOURCE_ID`,`CANCER_STUDY_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_sample` ( + `INTERNAL_ID` int(11) NOT NULL, + `RESOURCE_ID` varchar(255) NOT NULL, + `URL` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `RESOURCE_ID`, `URL`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_patient` ( + `INTERNAL_ID` int(11) NOT NULL, + `RESOURCE_ID` varchar(255) NOT NULL, + `URL` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `RESOURCE_ID`, `URL`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_study` ( + `INTERNAL_ID` int(11) NOT NULL, + `RESOURCE_ID` varchar(255) NOT NULL, + `URL` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `RESOURCE_ID`, `URL`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- THIS MUST BE KEPT IN SYNC WITH db.version PROPERTY IN pom.xml +INSERT INTO info VALUES ('2.13.1', NULL); + diff --git a/src/test/resources/cgds.sql b/src/test/resources/cgds.sql new file mode 100644 index 00000000000..2971b3d1be6 --- /dev/null +++ b/src/test/resources/cgds.sql @@ -0,0 +1,759 @@ +-- +-- Copyright (c) 2016 - 2022 Memorial Sloan Kettering Cancer Center. +-- +-- This library is distributed in the hope that it will be useful, but WITHOUT +-- ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS +-- FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder +-- is on an "as is" basis, and Memorial Sloan Kettering Cancer Center has no +-- obligations to provide maintenance, support, updates, enhancements or +-- modifications. In no event shall Memorial Sloan Kettering Cancer Center be +-- liable to any party for direct, indirect, special, incidental or +-- consequential damages, including lost profits, arising out of the use of this +-- software and its documentation, even if Memorial Sloan Kettering Cancer +-- Center has been advised of the possibility of such damage. +-- +-- This file is part of cBioPortal. +-- +-- cBioPortal is free software: you can redistribute it and/or modify +-- it under the terms of the GNU Affero General Public License as +-- published by the Free Software Foundation, either version 3 of the +-- License. +-- +-- This program is distributed in the hope that it will be useful, +-- but WITHOUT ANY WARRANTY; without even the implied warranty of +-- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +-- GNU Affero General Public License for more details. +-- +-- You should have received a copy of the GNU Affero General Public License +-- along with this program. If not, see . +-- ---------------------------------------------------------------------------- +-- +-- Database: `cgds` +-- +-- -------------------------------------------------------- +-- Database table schemas and version number +-- -------------------------------------------------------- +-- The order of the following DROP TABLE statements is +-- significant. If a table has a FOREIGN_KEY referring to +-- another table, then it should be dropped before the +-- other table is dropped. The approach taken here is to +-- order the CREATE TABLE statements so that refererenced +-- tables are created before referring tables. +-- DROP TABLE statements are here in the reverse order. +-- -------------------------------------------------------- + +DROP TABLE IF EXISTS `info`; +DROP TABLE IF EXISTS `clinical_event_data`; +DROP TABLE IF EXISTS `clinical_event`; +DROP TABLE IF EXISTS `pdb_uniprot_residue_mapping`; +DROP TABLE IF EXISTS `pdb_uniprot_alignment`; +DROP TABLE IF EXISTS `cosmic_mutation`; +DROP TABLE IF EXISTS `copy_number_seg_file`; +DROP TABLE IF EXISTS `copy_number_seg`; +DROP TABLE IF EXISTS `sample_cna_event`; +DROP TABLE IF EXISTS `cna_event`; +DROP TABLE IF EXISTS `gistic_to_gene`; +DROP TABLE IF EXISTS `gistic`; +DROP TABLE IF EXISTS `mut_sig`; +DROP TABLE IF EXISTS `clinical_attribute_meta`; +DROP TABLE IF EXISTS `clinical_sample`; +DROP TABLE IF EXISTS `clinical_patient`; +DROP TABLE IF EXISTS `resource_definition`; +DROP TABLE IF EXISTS `resource_sample`; +DROP TABLE IF EXISTS `resource_patient`; +DROP TABLE IF EXISTS `resource_study`; +DROP TABLE IF EXISTS `mutation_count_by_keyword`; +DROP TABLE IF EXISTS `allele_specific_copy_number`; +DROP TABLE IF EXISTS `mutation`; +DROP TABLE IF EXISTS `mutation_event`; +DROP TABLE IF EXISTS `structural_variant`; +DROP TABLE IF EXISTS `sample_profile`; +DROP TABLE IF EXISTS `gene_panel_list`; +DROP TABLE IF EXISTS `gene_panel`; +DROP TABLE IF EXISTS `genetic_profile_samples`; +DROP TABLE IF EXISTS `genetic_alteration`; +DROP TABLE IF EXISTS `genetic_profile_link`; +DROP TABLE IF EXISTS `alteration_driver_annotation`; +DROP TABLE IF EXISTS `genetic_profile`; +DROP TABLE IF EXISTS `gene_alias`; +DROP TABLE IF EXISTS `geneset_gene`; +DROP TABLE IF EXISTS `reference_genome_gene`; +DROP TABLE IF EXISTS `gene`; +DROP TABLE IF EXISTS `sample_list_list`; +DROP TABLE IF EXISTS `sample_list`; +DROP TABLE IF EXISTS `sample`; +DROP TABLE IF EXISTS `patient`; +DROP TABLE IF EXISTS `authorities`; +DROP TABLE IF EXISTS `data_access_tokens`; +DROP TABLE IF EXISTS `users`; +DROP TABLE IF EXISTS `cancer_study_tags`; +DROP TABLE IF EXISTS `cancer_study`; +DROP TABLE IF EXISTS `type_of_cancer`; +DROP TABLE IF EXISTS `geneset_hierarchy_leaf`; +DROP TABLE IF EXISTS `geneset_hierarchy_node`; +DROP TABLE IF EXISTS `geneset`; +DROP TABLE IF EXISTS `generic_entity_properties`; +DROP TABLE IF EXISTS `genetic_entity`; +DROP TABLE IF EXISTS `reference_genome`; + +-- -------------------------------------------------------- +CREATE TABLE `type_of_cancer` ( + `TYPE_OF_CANCER_ID` varchar(63) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DEDICATED_COLOR` char(31) NOT NULL, + `SHORT_NAME` varchar(127), + `PARENT` varchar(63), + PRIMARY KEY (`TYPE_OF_CANCER_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `reference_genome` ( + `REFERENCE_GENOME_ID` int(4) NOT NULL AUTO_INCREMENT, + `SPECIES` varchar(64) NOT NULL, + `NAME` varchar(64) NOT NULL, + `BUILD_NAME` varchar(64) NOT NULL, + `GENOME_SIZE` bigint(20) NULL, + `URL` varchar(256) NOT NULL, + `RELEASE_DATE` datetime DEFAULT NULL, + PRIMARY KEY (`REFERENCE_GENOME_ID`), + UNIQUE INDEX `BUILD_NAME_UNIQUE` (`BUILD_NAME` ASC) +); + +-- -------------------------------------------------------- +CREATE TABLE `cancer_study` ( + `CANCER_STUDY_ID` int(11) NOT NULL auto_increment, + `CANCER_STUDY_IDENTIFIER` varchar(255), + `TYPE_OF_CANCER_ID` varchar(63) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DESCRIPTION` varchar(1024) NOT NULL, + `PUBLIC` BOOLEAN NOT NULL, + `PMID` varchar(1024) DEFAULT NULL, + `CITATION` varchar(200) DEFAULT NULL, + `GROUPS` varchar(200) DEFAULT NULL, + `STATUS` int(1) DEFAULT NULL, + `IMPORT_DATE` datetime DEFAULT NULL, + `REFERENCE_GENOME_ID` int(4) DEFAULT 1, + PRIMARY KEY (`CANCER_STUDY_ID`), + UNIQUE (`CANCER_STUDY_IDENTIFIER`), + FOREIGN KEY (`TYPE_OF_CANCER_ID`) REFERENCES `type_of_cancer` (`TYPE_OF_CANCER_ID`), + FOREIGN KEY (`REFERENCE_GENOME_ID`) REFERENCES `reference_genome` (`REFERENCE_GENOME_ID`) ON DELETE RESTRICT +); + +-- -------------------------------------------------------- +CREATE TABLE `cancer_study_tags` ( + `CANCER_STUDY_ID` int(11) NOT NULL, + `TAGS` text NOT NULL, + PRIMARY KEY (`CANCER_STUDY_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `users` ( + `EMAIL` varchar(128) NOT NULL, + `NAME` varchar(255) NOT NULL, + `ENABLED` BOOLEAN NOT NULL, + PRIMARY KEY (`EMAIL`) +); + +-- -------------------------------------------------------- +CREATE TABLE `authorities` ( + `EMAIL` varchar(128) NOT NULL, + `AUTHORITY` varchar(255) NOT NULL +); + +-- -------------------------------------------------------- +CREATE TABLE `patient` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(50) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(63) NOT NULL, + `SAMPLE_TYPE` varchar(255) NOT NULL, + `PATIENT_ID` int(11) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`), + FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_list` ( + `LIST_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(255) NOT NULL, + `CATEGORY` varchar(255) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DESCRIPTION` mediumtext, + PRIMARY KEY (`LIST_ID`), + UNIQUE (`STABLE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_list_list` ( + `LIST_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + PRIMARY KEY (`LIST_ID`,`SAMPLE_ID`), + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- + +CREATE TABLE `genetic_entity` ( + `ID` int(11) NOT NULL AUTO_INCREMENT, + `ENTITY_TYPE` varchar(45) NOT NULL, + `STABLE_ID` varchar(255) DEFAULT NULL, + PRIMARY KEY (`ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `gene` ( + `ENTREZ_GENE_ID` int(11) NOT NULL, + `HUGO_GENE_SYMBOL` varchar(255) NOT NULL, + `GENETIC_ENTITY_ID` int(11) NOT NULL, + `TYPE` varchar(50), + PRIMARY KEY (`ENTREZ_GENE_ID`), + UNIQUE KEY `GENETIC_ENTITY_ID_UNIQUE` (`GENETIC_ENTITY_ID`), + KEY `HUGO_GENE_SYMBOL` (`HUGO_GENE_SYMBOL`), + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `gene_alias` ( + `ENTREZ_GENE_ID` int(11) NOT NULL, + `GENE_ALIAS` varchar(255) NOT NULL, + PRIMARY KEY (`ENTREZ_GENE_ID`,`GENE_ALIAS`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset` ( + `ID` INT(11) NOT NULL auto_increment, + `GENETIC_ENTITY_ID` INT NOT NULL, + `EXTERNAL_ID` VARCHAR(200) NOT NULL, + `NAME` VARCHAR(200) NOT NULL, + `DESCRIPTION` VARCHAR(300) NOT NULL, + `REF_LINK` TEXT, + PRIMARY KEY (`ID`), + UNIQUE INDEX `NAME_UNIQUE` (`NAME` ASC), + UNIQUE INDEX `EXTERNAL_ID_COLL_UNIQUE` (`EXTERNAL_ID` ASC), + UNIQUE INDEX `GENESET_GENETIC_ENTITY_ID_UNIQUE` (`GENETIC_ENTITY_ID` ASC), + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset_gene` ( + `GENESET_ID` INT(11) NOT NULL, + `ENTREZ_GENE_ID` INT(11) NOT NULL, + PRIMARY KEY (`GENESET_ID`, `ENTREZ_GENE_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENESET_ID`) REFERENCES `geneset` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset_hierarchy_node` ( + `NODE_ID` BIGINT(20) NOT NULL auto_increment, + `NODE_NAME` VARCHAR(200) NOT NULL, + `PARENT_ID` BIGINT NULL DEFAULT NULL, + PRIMARY KEY (`NODE_ID`), + UNIQUE INDEX `NODE_NAME_UNIQUE` (`NODE_NAME` ASC, `PARENT_ID` ASC) +); + +-- -------------------------------------------------------- +CREATE TABLE `geneset_hierarchy_leaf` ( + `NODE_ID` BIGINT NOT NULL, + `GENESET_ID` INT NOT NULL, + PRIMARY KEY (`NODE_ID`, `GENESET_ID`), + FOREIGN KEY (`NODE_ID`) REFERENCES `geneset_hierarchy_node` (`NODE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENESET_ID`) REFERENCES `geneset` (`ID`) ON DELETE CASCADE +); + +-- ------------------------------------------------------ +CREATE TABLE `generic_entity_properties` ( + `ID` INT(11) NOT NULL auto_increment, + `GENETIC_ENTITY_ID` INT NOT NULL, + `NAME` varchar(255) NOT NULL, + `VALUE` varchar(5000) NOT NULL, + UNIQUE (`GENETIC_ENTITY_ID`, `NAME`), + PRIMARY KEY (`ID`), + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_profile` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL AUTO_INCREMENT, + `STABLE_ID` varchar(255) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + `GENETIC_ALTERATION_TYPE` varchar(255) NOT NULL, + `GENERIC_ASSAY_TYPE` varchar(255) DEFAULT NULL, + `DATATYPE` varchar(255) NOT NULL, + `NAME` varchar(255) NOT NULL, + `DESCRIPTION` mediumtext, + `SHOW_PROFILE_IN_ANALYSIS_TAB` tinyint(1) NOT NULL, + `PIVOT_THRESHOLD` FLOAT DEFAULT NULL, + `SORT_ORDER` ENUM('ASC','DESC') DEFAULT NULL, + `PATIENT_LEVEL` boolean DEFAULT 0, + PRIMARY KEY (`GENETIC_PROFILE_ID`), + UNIQUE (`STABLE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_profile_link` ( + `REFERRING_GENETIC_PROFILE_ID` INT NOT NULL, + `REFERRED_GENETIC_PROFILE_ID` INT NOT NULL, + `REFERENCE_TYPE` VARCHAR(45) NULL, -- COMMENT 'Values: AGGREGATION (e.g. for GSVA) or STATISTIC (e.g. for Z-SCORES) + PRIMARY KEY (`REFERRING_GENETIC_PROFILE_ID`, `REFERRED_GENETIC_PROFILE_ID`), + FOREIGN KEY (`REFERRING_GENETIC_PROFILE_ID` ) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`REFERRED_GENETIC_PROFILE_ID` ) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE NO ACTION ON UPDATE NO ACTION +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_alteration` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `GENETIC_ENTITY_ID` int(11) NOT NULL, + `VALUES` longtext NOT NULL, + PRIMARY KEY (`GENETIC_PROFILE_ID`,`GENETIC_ENTITY_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENETIC_ENTITY_ID`) REFERENCES `genetic_entity` (`ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `genetic_profile_samples` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `ORDERED_SAMPLE_LIST` longtext NOT NULL, + UNIQUE (`GENETIC_PROFILE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `gene_panel` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `STABLE_ID` varchar(255) NOT NULL, + `DESCRIPTION` mediumtext, + PRIMARY KEY (`INTERNAL_ID`), + UNIQUE (`STABLE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `gene_panel_list` ( + `INTERNAL_ID` int(11) NOT NULL, + `GENE_ID` int(11) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `GENE_ID`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `gene_panel` (`INTERNAL_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_profile` ( + `SAMPLE_ID` int(11) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `PANEL_ID` int(11) DEFAULT NULL, + UNIQUE KEY `UQ_SAMPLE_ID_GENETIC_PROFILE_ID` (`SAMPLE_ID`,`GENETIC_PROFILE_ID`), -- Constraint to allow each sample only once in each profile + KEY (`SAMPLE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE, + FOREIGN KEY (`PANEL_ID`) REFERENCES `gene_panel` (`INTERNAL_ID`) ON DELETE RESTRICT +); + +-- -------------------------------------------------------- +CREATE TABLE `structural_variant` ( + `INTERNAL_ID` int(11) NOT NULL auto_increment, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `SITE1_ENTREZ_GENE_ID` int(11), + `SITE1_ENSEMBL_TRANSCRIPT_ID` varchar(25), + `SITE1_CHROMOSOME` varchar(5), + `SITE1_REGION` varchar(25), + `SITE1_REGION_NUMBER` int(11), + `SITE1_CONTIG` varchar(100), + `SITE1_POSITION` int(11), + `SITE1_DESCRIPTION` varchar(255), + `SITE2_ENTREZ_GENE_ID` int(11), + `SITE2_ENSEMBL_TRANSCRIPT_ID` varchar(25), + `SITE2_CHROMOSOME` varchar(5), + `SITE2_REGION` varchar(25), + `SITE2_REGION_NUMBER` int(11), + `SITE2_CONTIG` varchar(100), + `SITE2_POSITION` int(11), + `SITE2_DESCRIPTION` varchar(255), + `SITE2_EFFECT_ON_FRAME` varchar(25), + `NCBI_BUILD` varchar(10), + `DNA_SUPPORT` varchar(3), + `RNA_SUPPORT` varchar(3), + `NORMAL_READ_COUNT` int(11), + `TUMOR_READ_COUNT` int(11), + `NORMAL_VARIANT_COUNT` int(11), + `TUMOR_VARIANT_COUNT` int(11), + `NORMAL_PAIRED_END_READ_COUNT` int(11), + `TUMOR_PAIRED_END_READ_COUNT` int(11), + `NORMAL_SPLIT_READ_COUNT` int(11), + `TUMOR_SPLIT_READ_COUNT` int(11), + `ANNOTATION` varchar(255), + `BREAKPOINT_TYPE` varchar(25), + `CONNECTION_TYPE` varchar(25), + `EVENT_INFO` varchar(255), + `CLASS` varchar(25), + `LENGTH` int(11), + `COMMENTS` varchar(255), + `SV_STATUS` varchar(25) NOT NULL DEFAULT 'SOMATIC' COMMENT 'GERMLINE or SOMATIC.', + `ANNOTATION_JSON` JSON, + PRIMARY KEY (`INTERNAL_ID`), + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SITE1_ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SITE2_ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `alteration_driver_annotation` ( + `ALTERATION_EVENT_ID` int(255) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `DRIVER_FILTER` VARCHAR(20), + `DRIVER_FILTER_ANNOTATION` VARCHAR(80), + `DRIVER_TIERS_FILTER` VARCHAR(50), + `DRIVER_TIERS_FILTER_ANNOTATION` VARCHAR(80), + PRIMARY KEY (`ALTERATION_EVENT_ID`, `GENETIC_PROFILE_ID`, `SAMPLE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE, + INDEX (`DRIVER_FILTER`), + INDEX (`DRIVER_TIERS_FILTER`) +) COMMENT='Alteration driver annotation'; + +-- -------------------------------------------------------- +CREATE TABLE `mutation_event` ( + `MUTATION_EVENT_ID` int(255) NOT NULL auto_increment, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `CHR` varchar(5), + `START_POSITION` bigint(20), + `END_POSITION` bigint(20), + `REFERENCE_ALLELE` text, + `TUMOR_SEQ_ALLELE` text, + `PROTEIN_CHANGE` varchar(255), + `MUTATION_TYPE` varchar(255) COMMENT 'e.g. Missense, Nonsence, etc.', + `NCBI_BUILD` varchar(10), + `STRAND` varchar(2), + `VARIANT_TYPE` varchar(15), + `DB_SNP_RS` varchar(25), + `DB_SNP_VAL_STATUS` varchar(255), + `REFSEQ_MRNA_ID` varchar(64), + `CODON_CHANGE` varchar(255), + `UNIPROT_ACCESSION` varchar(64), + `PROTEIN_POS_START` int(11), + `PROTEIN_POS_END` int(11), + `CANONICAL_TRANSCRIPT` boolean, + `KEYWORD` varchar(255) DEFAULT NULL COMMENT 'e.g. truncating, V200 Missense, E338del, ', + KEY (`KEYWORD`), + PRIMARY KEY (`MUTATION_EVENT_ID`), + KEY `KEY_MUTATION_EVENT_DETAILS` (`CHR`, `START_POSITION`, `END_POSITION`, `TUMOR_SEQ_ALLELE`(240), `ENTREZ_GENE_ID`, `PROTEIN_CHANGE`, `MUTATION_TYPE`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + INDEX (`MUTATION_TYPE`) +) COMMENT='Mutation Data'; + +-- -------------------------------------------------------- +CREATE TABLE `mutation` ( + `MUTATION_EVENT_ID` int(255) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `CENTER` varchar(100), + `SEQUENCER` varchar(255), + `MUTATION_STATUS` varchar(25) COMMENT 'Germline, Somatic or LOH.', + `VALIDATION_STATUS` varchar(25), + `TUMOR_SEQ_ALLELE1` TEXT, + `TUMOR_SEQ_ALLELE2` TEXT, + `MATCHED_NORM_SAMPLE_BARCODE` varchar(255), + `MATCH_NORM_SEQ_ALLELE1` TEXT, + `MATCH_NORM_SEQ_ALLELE2` TEXT, + `TUMOR_VALIDATION_ALLELE1` TEXT, + `TUMOR_VALIDATION_ALLELE2` TEXT, + `MATCH_NORM_VALIDATION_ALLELE1` TEXT, + `MATCH_NORM_VALIDATION_ALLELE2` TEXT, + `VERIFICATION_STATUS` varchar(10), + `SEQUENCING_PHASE` varchar(100), + `SEQUENCE_SOURCE` varchar(255) NOT NULL, + `VALIDATION_METHOD` varchar(255), + `SCORE` varchar(100), + `BAM_FILE` varchar(255), + `TUMOR_ALT_COUNT` int(11), + `TUMOR_REF_COUNT` int(11), + `NORMAL_ALT_COUNT` int(11), + `NORMAL_REF_COUNT` int(11), + `AMINO_ACID_CHANGE` varchar(255), + `ANNOTATION_JSON` JSON, + UNIQUE KEY `UQ_MUTATION_EVENT_ID_GENETIC_PROFILE_ID_SAMPLE_ID` (`MUTATION_EVENT_ID`,`GENETIC_PROFILE_ID`,`SAMPLE_ID`), -- Constraint to block duplicated mutation entries + KEY (`GENETIC_PROFILE_ID`,`ENTREZ_GENE_ID`), + KEY (`GENETIC_PROFILE_ID`,`SAMPLE_ID`), + KEY (`GENETIC_PROFILE_ID`), + KEY (`ENTREZ_GENE_ID`), + KEY (`SAMPLE_ID`), + KEY (`MUTATION_EVENT_ID`), + FOREIGN KEY (`MUTATION_EVENT_ID`) REFERENCES `mutation_event` (`MUTATION_EVENT_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +) COMMENT='Mutation Data Details'; + +-- -------------------------------------------------------- +CREATE TABLE `mutation_count_by_keyword` ( + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `KEYWORD` varchar(255) DEFAULT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `KEYWORD_COUNT` int NOT NULL, + `GENE_COUNT` int NOT NULL, + KEY (`GENETIC_PROFILE_ID`,`KEYWORD`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_patient` ( + `INTERNAL_ID` int(11) NOT NULL, + `ATTR_ID` varchar(255) NOT NULL, + `ATTR_VALUE` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `ATTR_ID`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_sample` ( + `INTERNAL_ID` int(11) NOT NULL, + `ATTR_ID` varchar(255) NOT NULL, + `ATTR_VALUE` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`,`ATTR_ID`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_attribute_meta` ( + `ATTR_ID` varchar(255) NOT NULL, + `DISPLAY_NAME` varchar(255) NOT NULL, + `DESCRIPTION` varchar(2048) NOT NULL, + `DATATYPE` varchar(255) NOT NULL COMMENT 'NUMBER, BOOLEAN, or STRING', + `PATIENT_ATTRIBUTE` BOOLEAN NOT NULL, + `PRIORITY` varchar(255) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + PRIMARY KEY (`ATTR_ID`,`CANCER_STUDY_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `mut_sig` ( + `CANCER_STUDY_ID` int(11) NOT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `RANK` int(11) NOT NULL, + `NumBasesCovered` int(11) NOT NULL, + `NumMutations` int(11) NOT NULL, + `P_VALUE` float NOT NULL, + `Q_VALUE` float NOT NULL, + PRIMARY KEY (`CANCER_STUDY_ID`, `ENTREZ_GENE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE, + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `gistic` ( + `GISTIC_ROI_ID` bigint(20) NOT NULL auto_increment, + `CANCER_STUDY_ID` int(11) NOT NULL, + `CHROMOSOME` int(11) NOT NULL, + `CYTOBAND` varchar(255) NOT NULL, + `WIDE_PEAK_START` int(11) NOT NULL, + `WIDE_PEAK_END` int(11) NOT NULL, + `Q_VALUE` double NOT NULL, + `AMP` tinyint(1) NOT NULL, + PRIMARY KEY (`GISTIC_ROI_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `gistic_to_gene` ( + `GISTIC_ROI_ID` bigint(20) NOT NULL, + `ENTREZ_GENE_ID` int(11) NOT NULL, + PRIMARY KEY(`GISTIC_ROI_ID`, `ENTREZ_GENE_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + FOREIGN KEY (`GISTIC_ROI_ID`) REFERENCES `gistic` (`GISTIC_ROI_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `cna_event` ( + `CNA_EVENT_ID` int(255) NOT NULL auto_increment, + `ENTREZ_GENE_ID` int(11) NOT NULL, + `ALTERATION` tinyint NOT NULL, + PRIMARY KEY (`CNA_EVENT_ID`), + UNIQUE (`ENTREZ_GENE_ID`, `ALTERATION`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`), + INDEX (`ALTERATION`) +); + +-- -------------------------------------------------------- +CREATE TABLE `sample_cna_event` ( + `CNA_EVENT_ID` int(255) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `ANNOTATION_JSON` JSON, + KEY (`GENETIC_PROFILE_ID`,`SAMPLE_ID`), + PRIMARY KEY (`CNA_EVENT_ID`, `SAMPLE_ID`, `GENETIC_PROFILE_ID`), + FOREIGN KEY (`CNA_EVENT_ID`) REFERENCES `cna_event` (`CNA_EVENT_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `copy_number_seg` ( + `SEG_ID` bigint(20) NOT NULL auto_increment, + `CANCER_STUDY_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `CHR` varchar(5) NOT NULL, + `START` int(11) NOT NULL, + `END` int(11) NOT NULL, + `NUM_PROBES` int(11) NOT NULL, + `SEGMENT_MEAN` double NOT NULL, + KEY (`CANCER_STUDY_ID`,`SAMPLE_ID`), + PRIMARY KEY (`SEG_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `copy_number_seg_file` ( + `SEG_FILE_ID` int(11) NOT NULL auto_increment, + `CANCER_STUDY_ID` int(11) NOT NULL, + `REFERENCE_GENOME_ID` varchar(10) NOT NULL, + `DESCRIPTION` varchar(255) NOT NULL, + `FILENAME` varchar(255) NOT NULL, + PRIMARY KEY(`SEG_FILE_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `cosmic_mutation` ( + `COSMIC_MUTATION_ID` varchar(30) NOT NULL, + `CHR` varchar(5), + `START_POSITION` bigint(20), + `REFERENCE_ALLELE` varchar(255), + `TUMOR_SEQ_ALLELE` varchar(255), + `STRAND` varchar(2), + `CODON_CHANGE` varchar(255), + `ENTREZ_GENE_ID` int(11) NOT NULL, + `PROTEIN_CHANGE` varchar(255) NOT NULL, + `COUNT` int(11) NOT NULL, + `KEYWORD` varchar(50) DEFAULT NULL, + KEY (`KEYWORD`), + PRIMARY KEY (`COSMIC_MUTATION_ID`), + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_event` ( + `CLINICAL_EVENT_ID` int NOT NULL auto_increment, + `PATIENT_ID` int(11) NOT NULL, + `START_DATE` int NOT NULL, + `STOP_DATE` int, + `EVENT_TYPE` varchar(20) NOT NULL, + PRIMARY KEY (`CLINICAL_EVENT_ID`), + KEY (`PATIENT_ID`, `EVENT_TYPE`), + FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `clinical_event_data` ( + `CLINICAL_EVENT_ID` int(255) NOT NULL, + `KEY` varchar(255) NOT NULL, + `VALUE` varchar(5000) NOT NULL, + FOREIGN KEY (`CLINICAL_EVENT_ID`) REFERENCES `clinical_event` (`CLINICAL_EVENT_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `reference_genome_gene` ( + `ENTREZ_GENE_ID` int(11) NOT NULL, + `REFERENCE_GENOME_ID` int(4) NOT NULL, + `CHR` varchar(5) DEFAULT NULL, + `CYTOBAND` varchar(64) DEFAULT NULL, + `START` bigint(20) DEFAULT NULL, + `END` bigint(20) DEFAULT NULL, + PRIMARY KEY (`ENTREZ_GENE_ID`,`REFERENCE_GENOME_ID`), + FOREIGN KEY (`REFERENCE_GENOME_ID`) REFERENCES `reference_genome` (`REFERENCE_GENOME_ID`) ON DELETE CASCADE, + FOREIGN KEY (`ENTREZ_GENE_ID`) REFERENCES `gene` (`ENTREZ_GENE_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `data_access_tokens` ( + `TOKEN` varchar(50) NOT NULL, + `USERNAME` varchar(128) NOT NULL, + `EXPIRATION` datetime NOT NULL, + `CREATION` datetime NOT NULL, + PRIMARY KEY (`TOKEN`), + FOREIGN KEY (`USERNAME`) REFERENCES `users` (`EMAIL`) ON DELETE CASCADE +); +-- -------------------------------------------------------- +CREATE TABLE `allele_specific_copy_number` ( + `MUTATION_EVENT_ID` int(255) NOT NULL, + `GENETIC_PROFILE_ID` int(11) NOT NULL, + `SAMPLE_ID` int(11) NOT NULL, + `ASCN_INTEGER_COPY_NUMBER` int DEFAULT NULL, + `ASCN_METHOD` varchar(24) NOT NULL, + `CCF_EXPECTED_COPIES_UPPER` float DEFAULT NULL, + `CCF_EXPECTED_COPIES` float DEFAULT NULL, + `CLONAL` varchar(16) DEFAULT NULL, + `MINOR_COPY_NUMBER` int DEFAULT NULL, + `EXPECTED_ALT_COPIES` int DEFAULT NULL, + `TOTAL_COPY_NUMBER` int DEFAULT NULL, + UNIQUE KEY `UQ_ASCN_MUTATION_EVENT_ID_GENETIC_PROFILE_ID_SAMPLE_ID` (`MUTATION_EVENT_ID`,`GENETIC_PROFILE_ID`,`SAMPLE_ID`), -- Constraint to block duplicated mutation entries + FOREIGN KEY (`MUTATION_EVENT_ID`) REFERENCES `mutation_event` (`MUTATION_EVENT_ID`), + FOREIGN KEY (`GENETIC_PROFILE_ID`) REFERENCES `genetic_profile` (`GENETIC_PROFILE_ID`) ON DELETE CASCADE, + FOREIGN KEY (`SAMPLE_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); +-- -------------------------------------------------------- +CREATE TABLE `info` ( + `DB_SCHEMA_VERSION` varchar(24), + `GENESET_VERSION` varchar(24) +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_definition` ( + `RESOURCE_ID` varchar(255) NOT NULL, + `DISPLAY_NAME` varchar(255) NOT NULL, + `DESCRIPTION` varchar(2048) DEFAULT NULL, + `RESOURCE_TYPE` ENUM('STUDY', 'PATIENT', 'SAMPLE') NOT NULL, + `OPEN_BY_DEFAULT` BOOLEAN DEFAULT 0, + `PRIORITY` int(11) NOT NULL, + `CANCER_STUDY_ID` int(11) NOT NULL, + PRIMARY KEY (`RESOURCE_ID`,`CANCER_STUDY_ID`), + FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_sample` ( + `INTERNAL_ID` int(11) NOT NULL, + `RESOURCE_ID` varchar(255) NOT NULL, + `URL` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `RESOURCE_ID`, `URL`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `sample` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_patient` ( + `INTERNAL_ID` int(11) NOT NULL, + `RESOURCE_ID` varchar(255) NOT NULL, + `URL` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `RESOURCE_ID`, `URL`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE +); + +-- -------------------------------------------------------- +CREATE TABLE `resource_study` ( + `INTERNAL_ID` int(11) NOT NULL, + `RESOURCE_ID` varchar(255) NOT NULL, + `URL` varchar(255) NOT NULL, + PRIMARY KEY (`INTERNAL_ID`, `RESOURCE_ID`, `URL`), + FOREIGN KEY (`INTERNAL_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE +); + +-- THIS MUST BE KEPT IN SYNC WITH db.version PROPERTY IN pom.xml +INSERT INTO info VALUES ('2.13.1', NULL); + diff --git a/web/src/test/resources/custom-dataset-minimal.json b/src/test/resources/custom-dataset-minimal.json similarity index 100% rename from web/src/test/resources/custom-dataset-minimal.json rename to src/test/resources/custom-dataset-minimal.json diff --git a/web/src/test/resources/custom-dataset.json b/src/test/resources/custom-dataset.json similarity index 100% rename from web/src/test/resources/custom-dataset.json rename to src/test/resources/custom-dataset.json diff --git a/src/test/resources/data.sql b/src/test/resources/data.sql new file mode 100644 index 00000000000..4a92467d052 --- /dev/null +++ b/src/test/resources/data.sql @@ -0,0 +1,523 @@ +INSERT INTO type_of_cancer (TYPE_OF_CANCER_ID,NAME,DEDICATED_COLOR,SHORT_NAME,PARENT) VALUES ('brca','Breast Invasive Carcinoma','HotPink','Breast','tissue'); +INSERT INTO type_of_cancer (TYPE_OF_CANCER_ID,NAME,DEDICATED_COLOR,SHORT_NAME,PARENT) VALUES ('acc','Adrenocortical Carcinoma','Purple','ACC','adrenal_gland'); + +INSERT INTO `reference_genome` VALUES (1, 'human', 'hg19', 'GRCh37', NULL, 'http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips', '2009-02-01 00:00:00'); +INSERT INTO `reference_genome` VALUES (2, 'human', 'hg38', 'GRCh38', NULL, 'http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips', '2013-12-01 00:00:00'); + +INSERT INTO cancer_study (CANCER_STUDY_ID,CANCER_STUDY_IDENTIFIER,TYPE_OF_CANCER_ID,NAME,DESCRIPTION,PUBLIC,PMID,CITATION,GROUPS,STATUS,IMPORT_DATE,REFERENCE_GENOME_ID) VALUES(1,'study_tcga_pub','brca','Breast Invasive Carcinoma (TCGA, Nature 2012)','The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal.',1,'23000897,26451490','TCGA, Nature 2012, ...','SU2C-PI3K;PUBLIC;GDAC',0,'2011-12-18 13:17:17+00:00',1); +INSERT INTO cancer_study (CANCER_STUDY_ID,CANCER_STUDY_IDENTIFIER,TYPE_OF_CANCER_ID,NAME,DESCRIPTION,PUBLIC,PMID,CITATION,GROUPS,STATUS,IMPORT_DATE,REFERENCE_GENOME_ID) VALUES(2,'acc_tcga','acc','Adrenocortical Carcinoma (TCGA, Provisional)','TCGA Adrenocortical Carcinoma; raw data at the NCI.',1,'23000897','TCGA, Nature 2012','SU2C-PI3K;PUBLIC;GDAC',0,'2013-10-12 11:11:15+00:00',1); + +INSERT INTO cancer_study_tags (CANCER_STUDY_ID,TAGS) VALUES(1,'{"Analyst": {"Name": "Jack", "Email": "jack@something.com"}, "Load id": 35}'); +INSERT INTO cancer_study_tags (CANCER_STUDY_ID,TAGS) VALUES(2,'{"Load id": 36}'); + +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (1,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (2,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (3,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (4,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (5,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (6,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (7,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (8,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (9,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (10,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (11,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (12,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (13,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (14,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (15,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (16,'GENE', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (17,'GENESET', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (18,'GENESET', NULL); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (19,'GENERIC_ASSAY','17-AAG'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (20,'GENERIC_ASSAY','AEW541'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (28,'GENERIC_ASSAY','mean_1'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE,STABLE_ID) VALUES (29,'GENERIC_ASSAY','mean_2'); + +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(207,'AKT1',1,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(208,'AKT2',2,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(10000,'AKT3',3,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(369,'ARAF',4,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(472,'ATM',5,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(673,'BRAF',6,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(672,'BRCA1',7,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(675,'BRCA2',8,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(3265,'HRAS',9,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(3845,'KRAS',10,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(4893,'NRAS',11,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(79501,'OR4F5',12,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(148398,'SAMD11',13,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(26155,'NOC2L',14,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(2064,'ERBB2',15,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(2886,'GRB7',16,'protein-coding'); +INSERT INTO cosmic_mutation (COSMIC_MUTATION_ID,PROTEIN_CHANGE,ENTREZ_GENE_ID,COUNT,KEYWORD) VALUES(3677745,'D45A',79501,1,'OR4F5 D45 missense'); +INSERT INTO cosmic_mutation (COSMIC_MUTATION_ID,PROTEIN_CHANGE,ENTREZ_GENE_ID,COUNT,KEYWORD) VALUES(426644,'G145C',79501,1,'OR4F5 G145 missense'); +INSERT INTO cosmic_mutation (COSMIC_MUTATION_ID,PROTEIN_CHANGE,ENTREZ_GENE_ID,COUNT,KEYWORD) VALUES(460103,'P23P',148398,1,'SAMD11 P23 silent'); +INSERT INTO cosmic_mutation (COSMIC_MUTATION_ID,PROTEIN_CHANGE,ENTREZ_GENE_ID,COUNT,KEYWORD) VALUES(4010395,'S146S',26155,1,'NOC2L S146 silent'); +INSERT INTO cosmic_mutation (COSMIC_MUTATION_ID,PROTEIN_CHANGE,ENTREZ_GENE_ID,COUNT,KEYWORD) VALUES(1290240,'M1T',26155,1,'NOC2L truncating'); +INSERT INTO cosmic_mutation (COSMIC_MUTATION_ID,PROTEIN_CHANGE,ENTREZ_GENE_ID,COUNT,KEYWORD) VALUES(4010425,'Q197*',26155,1,'NOC2L truncating'); + +INSERT INTO gene_alias (ENTREZ_GENE_ID,GENE_ALIAS) VALUES (207,'AKT alias'); +INSERT INTO gene_alias (ENTREZ_GENE_ID,GENE_ALIAS) VALUES (207,'AKT alias2'); +INSERT INTO gene_alias (ENTREZ_GENE_ID,GENE_ALIAS) VALUES (675,'BRCA1 alias'); + +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(207,'14q32.33',10838,105235686,105262088,14,1); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(207,'14q32.33',11162,104769349,104795751,14,2); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(208,'19q13.2',15035, 40736224, 40791443,19,1); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(208,'19q13.2',15035, 40230317, 40285536,19,2); + +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (2,'study_tcga_pub_gistic',1,'COPY_NUMBER_ALTERATION','DISCRETE','Putative copy-number alterations from GISTIC','Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.',1); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (3,'study_tcga_pub_mrna',1,'MRNA_EXPRESSION','Z-SCORE','mRNA expression (microarray)','Expression levels (Agilent microarray).',0); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (10,'study_tcga_pub_m_na',1,'MRNA_EXPRESSION','Z-SCORE','mRNA expression (microarray)','Expression levels (Agilent microarray).',0); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (4,'study_tcga_pub_log2CNA',1,'COPY_NUMBER_ALTERATION','LOG2-VALUE','Log2 copy-number values','Log2 copy-number VALUESfor each gene (from Affymetrix SNP6).',0); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (5,'study_tcga_pub_methylation_hm27',1,'METHYLATION','CONTINUOUS','Methylation (HM27)','Methylation beta-VALUES (HM27 platform). For genes with multiple methylation probes, the probe least correlated with expression is selected.',0); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (6,'study_tcga_pub_mutations',1,'MUTATION_EXTENDED','MAF','Mutations','Mutation data from whole exome sequencing.',1); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (7,'study_tcga_pub_sv',1,'STRUCTURAL_VARIANT','SV','Structural Variants','Structural Variants detected by Illumina HiSeq sequencing.',1); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (8,'acc_tcga_mutations',2,'MUTATION_EXTENDED','MAF','Mutations','Mutation data from whole exome sequencing.',1); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB) VALUES (9,'study_tcga_pub_gsva_scores',1,'GENESET_SCORE','GSVA-SCORE','GSVA scores','GSVA scores for oncogenic signature gene sets from MsigDB calculated with GSVA version 1.22.4, R version 3.3.2.',1); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB,GENERIC_ASSAY_TYPE) VALUES (11,'study_tcga_pub_treatment_ic50',1,'GENERIC_ASSAY','IC50','Treatment IC50 values','Treatment response IC50 values',1,'TREATMENT_RESPONSE'); +INSERT INTO genetic_profile (GENETIC_PROFILE_ID,STABLE_ID,CANCER_STUDY_ID,GENETIC_ALTERATION_TYPE,DATATYPE,NAME,DESCRIPTION,SHOW_PROFILE_IN_ANALYSIS_TAB,GENERIC_ASSAY_TYPE) VALUES (12,'study_tcga_pub_mutational_signature',1,'GENERIC_ASSAY','LIMIT-VALUE','mutational_signature values','mutational_signature values',1,'MUTATIONAL_SIGNATURE'); + +INSERT INTO genetic_profile_samples (GENETIC_PROFILE_ID,ORDERED_SAMPLE_LIST) VALUES (2,'1,2,3,4,5,6,7,8,9,10,11,12,13,14,'); +INSERT INTO genetic_profile_samples (GENETIC_PROFILE_ID,ORDERED_SAMPLE_LIST) VALUES (3,'2,3,6,8,9,10,12,13,'); +INSERT INTO genetic_profile_samples (GENETIC_PROFILE_ID,ORDERED_SAMPLE_LIST) VALUES (4,'1,2,3,4,5,6,7,8,9,10,11,12,13,14,'); +INSERT INTO genetic_profile_samples (GENETIC_PROFILE_ID,ORDERED_SAMPLE_LIST) VALUES (5,'2,'); +INSERT INTO genetic_profile_samples (GENETIC_PROFILE_ID,ORDERED_SAMPLE_LIST) VALUES (11,'1,2,3,4,5,6,7,8,9,10,11,12,13,14,'); + +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (1,'TCGA-A1-A0SB',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (2,'TCGA-A1-A0SD',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (3,'TCGA-A1-A0SE',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (4,'TCGA-A1-A0SF',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (5,'TCGA-A1-A0SG',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (6,'TCGA-A1-A0SH',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (7,'TCGA-A1-A0SI',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (8,'TCGA-A1-A0SJ',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (9,'TCGA-A1-A0SK',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (10,'TCGA-A1-A0SM',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (11,'TCGA-A1-A0SN',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (12,'TCGA-A1-A0SO',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (13,'TCGA-A1-A0SP',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (14,'TCGA-A1-A0SQ',1); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (15,'TCGA-A1-B0SO',2); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (16,'TCGA-A1-B0SP',2); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (17,'TCGA-A1-B0SQ',2); +INSERT INTO patient (INTERNAL_ID,STABLE_ID,CANCER_STUDY_ID) VALUES (18,'TCGA-A1-A0SB',2); +INSERT INTO genetic_profile_samples (GENETIC_PROFILE_ID,ORDERED_SAMPLE_LIST) VALUES(10,'1,2,3,4,5,6,7,8,9,10,11,'); + +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (1,'TCGA-A1-A0SB-01','Primary Solid Tumor',1); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (2,'TCGA-A1-A0SD-01','Primary Solid Tumor',2); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (3,'TCGA-A1-A0SE-01','Primary Solid Tumor',3); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (4,'TCGA-A1-A0SF-01','Primary Solid Tumor',4); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (5,'TCGA-A1-A0SG-01','Primary Solid Tumor',5); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (6,'TCGA-A1-A0SH-01','Primary Solid Tumor',6); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (7,'TCGA-A1-A0SI-01','Primary Solid Tumor',7); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (8,'TCGA-A1-A0SJ-01','Primary Solid Tumor',8); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (9,'TCGA-A1-A0SK-01','Primary Solid Tumor',9); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (10,'TCGA-A1-A0SM-01','Primary Solid Tumor',10); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (11,'TCGA-A1-A0SN-01','Primary Solid Tumor',11); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (12,'TCGA-A1-A0SO-01','Primary Solid Tumor',12); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (13,'TCGA-A1-A0SP-01','Primary Solid Tumor',13); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (14,'TCGA-A1-A0SQ-01','Primary Solid Tumor',14); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (15,'TCGA-A1-B0SO-01','Primary Solid Tumor',15); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (16,'TCGA-A1-B0SP-01','Primary Solid Tumor',16); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (17,'TCGA-A1-B0SQ-01','Primary Solid Tumor',17); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (18,'TCGA-A1-A0SB-02','Primary Solid Tumor',1); +INSERT INTO sample (INTERNAL_ID,STABLE_ID,SAMPLE_TYPE,PATIENT_ID) VALUES (19,'TCGA-A1-A0SB-01','Primary Solid Tumor',18); + + +INSERT INTO mutation_event (MUTATION_EVENT_ID,ENTREZ_GENE_ID,CHR,START_POSITION,END_POSITION,REFERENCE_ALLELE,TUMOR_SEQ_ALLELE,PROTEIN_CHANGE,MUTATION_TYPE,FUNCTIONAL_IMPACT_SCORE,FIS_VALUE,LINK_XVAR,LINK_PDB,LINK_MSA,NCBI_BUILD,STRAND,VARIANT_TYPE,DB_SNP_RS,DB_SNP_VAL_STATUS,ONCOTATOR_DBSNP_RS,ONCOTATOR_REFSEQ_MRNA_ID,ONCOTATOR_CODON_CHANGE,ONCOTATOR_UNIPROT_ENTRY_NAME,ONCOTATOR_UNIPROT_ACCESSION,ONCOTATOR_PROTEIN_POS_START,ONCOTATOR_PROTEIN_POS_END,CANONICAL_TRANSCRIPT,KEYWORD) VALUES (2038,672,'17',41244748,41244748,'G','A','Q934*','Nonsense_Mutation','NA',0,'getma.org/?cm=var&var=hg19,17,41244748,G,A&fts=all','NA','NA','37','+','SNP','rs80357223','unknown','rs80357223','NM_007294','c.(2800-2802)CAG>TAG','BRCA1_HUMAN','P38398',934,934,1,'BRCA1 truncating'); +INSERT INTO mutation_event (MUTATION_EVENT_ID,ENTREZ_GENE_ID,CHR,START_POSITION,END_POSITION,REFERENCE_ALLELE,TUMOR_SEQ_ALLELE,PROTEIN_CHANGE,MUTATION_TYPE,FUNCTIONAL_IMPACT_SCORE,FIS_VALUE,LINK_XVAR,LINK_PDB,LINK_MSA,NCBI_BUILD,STRAND,VARIANT_TYPE,DB_SNP_RS,DB_SNP_VAL_STATUS,ONCOTATOR_DBSNP_RS,ONCOTATOR_REFSEQ_MRNA_ID,ONCOTATOR_CODON_CHANGE,ONCOTATOR_UNIPROT_ENTRY_NAME,ONCOTATOR_UNIPROT_ACCESSION,ONCOTATOR_PROTEIN_POS_START,ONCOTATOR_PROTEIN_POS_END,CANONICAL_TRANSCRIPT,KEYWORD) VALUES (22604,672,'17',41258504,41258504,'A','C','C61G','Missense_Mutation','H',4.355,'getma.org/?cm=var&var=hg19,17,41258504,A,C&fts=all','getma.org/pdb.php?prot=BRCA1_HUMAN&from=24&to=64&var=C61G','getma.org/?cm=msa&ty=f&p=BRCA1_HUMAN&rb=24&re=64&var=C61G','37','+','SNP','rs28897672','byCluster','rs28897672','NM_007294','c.(181-183)TGT>GGT','BRCA1_HUMAN','P38398',61,61,1,'BRCA1 C61 missense'); +INSERT INTO mutation_event (MUTATION_EVENT_ID,ENTREZ_GENE_ID,CHR,START_POSITION,END_POSITION,REFERENCE_ALLELE,TUMOR_SEQ_ALLELE,PROTEIN_CHANGE,MUTATION_TYPE,FUNCTIONAL_IMPACT_SCORE,FIS_VALUE,LINK_XVAR,LINK_PDB,LINK_MSA,NCBI_BUILD,STRAND,VARIANT_TYPE,DB_SNP_RS,DB_SNP_VAL_STATUS,ONCOTATOR_DBSNP_RS,ONCOTATOR_REFSEQ_MRNA_ID,ONCOTATOR_CODON_CHANGE,ONCOTATOR_UNIPROT_ENTRY_NAME,ONCOTATOR_UNIPROT_ACCESSION,ONCOTATOR_PROTEIN_POS_START,ONCOTATOR_PROTEIN_POS_END,CANONICAL_TRANSCRIPT,KEYWORD) VALUES (2039,672,'17',41276033,41276033,'C','T','C27_splice','Splice_Site','NA',1.4013e-45,'NA','NA','NA','37','+','SNP','rs80358010','byCluster','rs80358010','NM_007294','c.e2+1','NA','NA',-1,-1,1,'BRCA1 truncating'); +INSERT INTO mutation_event (MUTATION_EVENT_ID,ENTREZ_GENE_ID,CHR,START_POSITION,END_POSITION,REFERENCE_ALLELE,TUMOR_SEQ_ALLELE,PROTEIN_CHANGE,MUTATION_TYPE,FUNCTIONAL_IMPACT_SCORE,FIS_VALUE,LINK_XVAR,LINK_PDB,LINK_MSA,NCBI_BUILD,STRAND,VARIANT_TYPE,DB_SNP_RS,DB_SNP_VAL_STATUS,ONCOTATOR_DBSNP_RS,ONCOTATOR_REFSEQ_MRNA_ID,ONCOTATOR_CODON_CHANGE,ONCOTATOR_UNIPROT_ENTRY_NAME,ONCOTATOR_UNIPROT_ACCESSION,ONCOTATOR_PROTEIN_POS_START,ONCOTATOR_PROTEIN_POS_END,CANONICAL_TRANSCRIPT,KEYWORD) VALUES (2040,207,'17',41244748,41244748,'G','A','Q934*','Nonsense_Mutation','NA',0,'getma.org/?cm=var&var=hg19,17,41244748,G,A&fts=all','NA','NA','37','+','SNP','rs80357223','unknown','rs80357223','NM_007294','c.(2800-2802)CAG>TAG','BRCA1_HUMAN','P38398',934,934,1,'BRCA1 truncating'); +INSERT INTO mutation_event (MUTATION_EVENT_ID,ENTREZ_GENE_ID,CHR,START_POSITION,END_POSITION,REFERENCE_ALLELE,TUMOR_SEQ_ALLELE,PROTEIN_CHANGE,MUTATION_TYPE,FUNCTIONAL_IMPACT_SCORE,FIS_VALUE,LINK_XVAR,LINK_PDB,LINK_MSA,NCBI_BUILD,STRAND,VARIANT_TYPE,DB_SNP_RS,DB_SNP_VAL_STATUS,ONCOTATOR_DBSNP_RS,ONCOTATOR_REFSEQ_MRNA_ID,ONCOTATOR_CODON_CHANGE,ONCOTATOR_UNIPROT_ENTRY_NAME,ONCOTATOR_UNIPROT_ACCESSION,ONCOTATOR_PROTEIN_POS_START,ONCOTATOR_PROTEIN_POS_END,CANONICAL_TRANSCRIPT,KEYWORD) VALUES (2041,207,'17',41258504,41258504,'A','C','C61G','Missense_Mutation','H',4.355,'getma.org/?cm=var&var=hg19,17,41258504,A,C&fts=all','getma.org/pdb.php?prot=BRCA1_HUMAN&from=24&to=64&var=C61G','getma.org/?cm=msa&ty=f&p=BRCA1_HUMAN&rb=24&re=64&var=C61G','37','+','SNP','rs28897672','byCluster','rs28897672','NM_007294','c.(181-183)TGT>GGT','BRCA1_HUMAN','P38398',61,61,1,'BRCA1 C61 missense'); +INSERT INTO mutation_event (MUTATION_EVENT_ID,ENTREZ_GENE_ID,CHR,START_POSITION,END_POSITION,REFERENCE_ALLELE,TUMOR_SEQ_ALLELE,PROTEIN_CHANGE,MUTATION_TYPE,FUNCTIONAL_IMPACT_SCORE,FIS_VALUE,LINK_XVAR,LINK_PDB,LINK_MSA,NCBI_BUILD,STRAND,VARIANT_TYPE,DB_SNP_RS,DB_SNP_VAL_STATUS,ONCOTATOR_DBSNP_RS,ONCOTATOR_REFSEQ_MRNA_ID,ONCOTATOR_CODON_CHANGE,ONCOTATOR_UNIPROT_ENTRY_NAME,ONCOTATOR_UNIPROT_ACCESSION,ONCOTATOR_PROTEIN_POS_START,ONCOTATOR_PROTEIN_POS_END,CANONICAL_TRANSCRIPT,KEYWORD) VALUES (2042,208,'17',41276033,41276033,'C','T','C27_splice','Splice_Site','NA',1.4013e-45,'NA','NA','NA','37','+','SNP','rs80358010','byCluster','rs80358010','NM_007294','c.e2+1','NA','NA',-1,-1,1,'BRCA1 truncating'); +INSERT INTO mutation_event (MUTATION_EVENT_ID,ENTREZ_GENE_ID,CHR,START_POSITION,END_POSITION,REFERENCE_ALLELE,TUMOR_SEQ_ALLELE,PROTEIN_CHANGE,MUTATION_TYPE,FUNCTIONAL_IMPACT_SCORE,FIS_VALUE,LINK_XVAR,LINK_PDB,LINK_MSA,NCBI_BUILD,STRAND,VARIANT_TYPE,DB_SNP_RS,DB_SNP_VAL_STATUS,ONCOTATOR_DBSNP_RS,ONCOTATOR_REFSEQ_MRNA_ID,ONCOTATOR_CODON_CHANGE,ONCOTATOR_UNIPROT_ENTRY_NAME,ONCOTATOR_UNIPROT_ACCESSION,ONCOTATOR_PROTEIN_POS_START,ONCOTATOR_PROTEIN_POS_END,CANONICAL_TRANSCRIPT,KEYWORD) VALUES (1000,2064,'NA',-1,-1,'NA','','ERBB2-TEST Fusion','Fusion','NA',-1,'NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA',-1,-1,1,'ERBB2-TEST Fusion'); + +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2038,6,6, 'Putative_Driver', 'Pathogenic', 'Tier 1', 'Highly Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (22604,6,6, 'Putative_Passenger', 'Pathogenic', 'Tier 2', 'Potentially Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2039,6,12, 'Putative_Passenger', 'Pathogenic', 'Tier 1', 'Highly Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2038,6,7, 'Putative_Driver', 'Pathogenic', 'Tier 2', 'Potentially Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2039,6,13, 'Putative_Driver', 'Pathogenic', 'Tier 1', 'Highly Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2040,6,1, 'Putative_Driver', 'Pathogenic', 'Tier 1', 'Highly Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2041,6,2, 'Putative_Passenger', 'Pathogenic', 'Tier 2', 'Potentially Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2042,6,3, 'Putative_Passenger', 'Pathogenic', 'Tier 1', 'Highly Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (2042,8,15, 'Putative_Driver', 'Pathogenic', 'Tier 1', 'Highly Actionable'); + +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2038,6,6,672,'genome.wustl.edu','IlluminaGAIIx','NA','Unknown','G','A','TCGA-A1-A0SH-10A-03D-A099-09','G','A','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',1,0,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (22604,6,6,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','A','C','TCGA-A1-A0SH-10A-03D-A099-09','A','C','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2039,6,12,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','T','T','TCGA-A1-A0SO-10A-03D-A099-09','T','T','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2038,6,7,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','G','A','TCGA-A1-A0SH-10A-03D-A099-09','G','A','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2039,6,13,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','T','T','TCGA-A1-A0SO-10A-03D-A099-09','T','T','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2040,6,1,207,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','G','A','TCGA-A1-A0SH-10A-03D-A099-09','G','A','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2041,6,2,207,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','A','C','TCGA-A1-A0SH-10A-03D-A099-09','A','C','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',0,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2042,6,3,208,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','T','T','TCGA-A1-A0SO-10A-03D-A099-09','T','T','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (2042,8,15,208,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','T','T','TCGA-A1-A0SO-10A-03D-A099-09','T','T','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1,'cyclases/Protein','{"zygosity":{"status": "heterozygous"}}'); +INSERT INTO mutation (MUTATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID,ENTREZ_GENE_ID,CENTER,SEQUENCER,MUTATION_STATUS,VALIDATION_STATUS,TUMOR_SEQ_ALLELE1,TUMOR_SEQ_ALLELE2,MATCHED_NORM_SAMPLE_BARCODE,MATCH_NORM_SEQ_ALLELE1,MATCH_NORM_SEQ_ALLELE2,TUMOR_VALIDATION_ALLELE1,TUMOR_VALIDATION_ALLELE2,MATCH_NORM_VALIDATION_ALLELE1,MATCH_NORM_VALIDATION_ALLELE2,VERIFICATION_STATUS,SEQUENCING_PHASE,SEQUENCE_SOURCE,VALIDATION_METHOD,SCORE,BAM_FILE,TUMOR_ALT_COUNT,TUMOR_REF_COUNT,NORMAL_ALT_COUNT,NORMAL_REF_COUNT,AMINO_ACID_CHANGE,ANNOTATION_JSON) VALUES (1000,6,7,2064,'uranus','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA','NA',-1,-1,-1,-1,'','{"zygosity":{"status": "heterozygous"}}'); + +INSERT INTO gene_panel (INTERNAL_ID,STABLE_ID,DESCRIPTION) VALUES (1,'TESTPANEL1','A test panel consisting of a few genes'); +INSERT INTO gene_panel (INTERNAL_ID,STABLE_ID,DESCRIPTION) VALUES (2,'TESTPANEL2','Another test panel consisting of a few genes'); + +INSERT INTO gene_panel_list (INTERNAL_ID,GENE_ID) VALUES (1,207); +INSERT INTO gene_panel_list (INTERNAL_ID,GENE_ID) VALUES (1,369); +INSERT INTO gene_panel_list (INTERNAL_ID,GENE_ID) VALUES (1,672); +INSERT INTO gene_panel_list (INTERNAL_ID,GENE_ID) VALUES (2,207); +INSERT INTO gene_panel_list (INTERNAL_ID,GENE_ID) VALUES (2,208); +INSERT INTO gene_panel_list (INTERNAL_ID,GENE_ID) VALUES (2,4893); + +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (1,2,1); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (1,3,1); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (1,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (1,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (2,2,2); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (2,3,1); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (2,4,2); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (2,5,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (2,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (3,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (3,3,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (3,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (3,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (4,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (4,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (5,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (5,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (6,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (6,3,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (6,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (6,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (7,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (7,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (7,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (8,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (8,3,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (8,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (8,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (9,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (9,3,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (9,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (9,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (10,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (10,3,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (10,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (10,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (11,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (11,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (12,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (12,3,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (12,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (12,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (13,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (13,3,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (13,4,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (13,6,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (14,2,NULL); +INSERT INTO sample_profile (SAMPLE_ID,GENETIC_PROFILE_ID,PANEL_ID) VALUES (14,4,NULL); + +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (1,'study_tcga_pub_all','other',1,'All Tumors','All tumor samples'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (2,'study_tcga_pub_acgh','other',1,'Tumors aCGH','All tumors with aCGH data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (3,'study_tcga_pub_cnaseq','other',1,'Tumors with sequencing and aCGH data','All tumor samples that have CNA and sequencing data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (4,'study_tcga_pub_complete','other',1,'Complete samples (mutations, copy-number, expression)','Samples with complete data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (5,'study_tcga_pub_log2CNA','other',1,'Tumors log2 copy-number','All tumors with log2 copy-number data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (6,'study_tcga_pub_methylation_hm27','all_cases_with_mutation_data',1,'Tumors with methylation data','All samples with methylation (HM27) data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (7,'study_tcga_pub_mrna','other',1,'Tumors with mRNA data (Agilent microarray)','All samples with mRNA expression data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (8,'study_tcga_pub_sequenced','other',1,'Sequenced Tumors','All sequenced samples'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (9,'study_tcga_pub_cna','other',1,'Tumor Samples with CNA data','All tumors with CNA data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (10,'study_tcga_pub_rna_seq_v2_mrna','other',1,'Tumor Samples with mRNA data (RNA Seq V2)','All samples with mRNA expression data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (11,'study_tcga_pub_microrna','other',1,'Tumors with microRNA data (microRNA-Seq)','All samples with microRNA data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (12,'study_tcga_pub_rppa','other',1,'Tumor Samples with RPPA data','Tumors with reverse phase protein array (RPPA) data for about 200 antibodies'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (13,'study_tcga_pub_3way_complete','other',1,'All Complete Tumors','All tumor samples that have mRNA,CNA and sequencing data'); +INSERT INTO sample_list (LIST_ID,STABLE_ID,CATEGORY,CANCER_STUDY_ID,NAME,DESCRIPTION) VALUES (14,'acc_tcga_all','other',2,'All Tumors','All tumor samples'); + +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,1); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,4); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,5); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,7); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,11); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,13); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (1,14); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,1); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,4); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,5); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,7); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,11); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,13); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (2,14); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (3,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (3,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (3,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (3,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (3,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (3,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (3,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (4,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (4,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (4,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (4,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (4,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (4,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (4,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,1); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,4); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,5); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,7); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,11); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,13); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (5,14); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (6,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (7,13); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (8,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (8,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (8,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (8,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (8,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (8,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (8,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (9,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (9,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (9,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (9,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (9,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (9,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (9,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (10,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (10,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (10,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (10,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (10,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (10,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (10,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (13,2); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (13,3); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (13,6); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (13,8); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (13,9); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (13,10); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (13,12); +INSERT INTO sample_list_list (LIST_ID,SAMPLE_ID) VALUES (14,15); + +INSERT INTO copy_number_seg (SEG_ID,CANCER_STUDY_ID,SAMPLE_ID,CHR,START,END,NUM_PROBES,SEGMENT_MEAN) VALUES (50236594,1,1,'1',324556,180057677,291,0.0519); +INSERT INTO copy_number_seg (SEG_ID,CANCER_STUDY_ID,SAMPLE_ID,CHR,START,END,NUM_PROBES,SEGMENT_MEAN) VALUES (50236595,1,1,'2',224556,327677,391,0.0219); +INSERT INTO copy_number_seg (SEG_ID,CANCER_STUDY_ID,SAMPLE_ID,CHR,START,END,NUM_PROBES,SEGMENT_MEAN) VALUES (50236593,1,2, '2',1402650,190262486,207,0.0265); +INSERT INTO copy_number_seg (SEG_ID,CANCER_STUDY_ID,SAMPLE_ID,CHR,START,END,NUM_PROBES,SEGMENT_MEAN) VALUES (50236592,1,3, '3',1449872,194238390,341,0.0347); +INSERT INTO copy_number_seg (SEG_ID,CANCER_STUDY_ID,SAMPLE_ID,CHR,START,END,NUM_PROBES,SEGMENT_MEAN) VALUES (50236500,2,15, '2',14492,19423390,41,0.047); + +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (1,'RETROSPECTIVE_COLLECTION','NO'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (1,'FORM_COMPLETION_DATE','2013-12-5'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (1,'OTHER_PATIENT_ID','286CF147-B7F7-4A05-8E41-7FBD3717AD71'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (2,'PROSPECTIVE_COLLECTION','YES'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (15,'DFS_MONTHS','5.72'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (15,'DFS_STATUS','1:Recurred/Progressed'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (15,'OS_MONTHS','12.3'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (15,'OS_STATUS','0:LIVING'); +INSERT INTO clinical_patient (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (18,'RETROSPECTIVE_COLLECTION','NO'); + +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (1,'OTHER_SAMPLE_ID','5C631CE8-F96A-4C35-A459-556FC4AB21E1'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (1,'DAYS_TO_COLLECTION','276'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (1,'IS_FFPE','NO'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (2,'OCT_EMBEDDED','false'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (2,'PATHOLOGY_REPORT_FILE_NAME','TCGA-GC-A3BM.F3408556-9259-4700-B9A0-F41E516B420C.pdf'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (2,'SAMPLE_TYPE','Primary Tumor'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (15,'OTHER_SAMPLE_ID','91E7F41C-17B3-4724-96EF-D3C207B964E1'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (15,'DAYS_TO_COLLECTION','111'); +INSERT INTO clinical_sample (INTERNAL_ID,ATTR_ID,ATTR_VALUE) VALUES (19,'DAYS_TO_COLLECTION','111'); + + +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('RETROSPECTIVE_COLLECTION','Tissue Retrospective Collection Indicator','Text indicator for the time frame of tissue procurement,indicating that the tissue was obtained and stored prior to the initiation of the project.','STRING',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('PROSPECTIVE_COLLECTION','Tissue Prospective Collection Indicator','Text indicator for the time frame of tissue procurement,indicating that the tissue was procured in parallel to the project.','STRING',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('FORM_COMPLETION_DATE','Form completion date','Form completion date','STRING',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OTHER_PATIENT_ID','Other Patient ID','Legacy DMP patient identifier (DMPnnnn)','STRING',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('DFS_MONTHS','Disease Free (Months)','Disease free (months) since initial treatment.','NUMBER',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('DFS_STATUS','Disease Free Status','Disease free status since initial treatment.','STRING',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OS_MONTHS','Overall Survival (Months)','Overall survival in months since initial diagonosis.','NUMBER',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OS_STATUS','Overall Survival Status','Overall patient survival status.','STRING',1,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OTHER_SAMPLE_ID','Other Sample ID','Legacy DMP sample identifier (DMPnnnn)','STRING',0,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('DAYS_TO_COLLECTION','Days to Sample Collection.','Days to sample collection.','STRING',0,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('IS_FFPE','Is FFPE','If the sample is from FFPE','STRING',0,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OCT_EMBEDDED','Oct embedded','Oct embedded','STRING',0,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('PATHOLOGY_REPORT_FILE_NAME','Pathology Report File Name','Pathology Report File Name','STRING',0,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('SAMPLE_TYPE','Sample Type','The type of sample (i.e.,normal,primary,met,recurrence).','STRING',0,'1',1); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('RETROSPECTIVE_COLLECTION','Tissue Retrospective Collection Indicator','Text indicator for the time frame of tissue procurement,indicating that the tissue was obtained and stored prior to the initiation of the project.','STRING',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('PROSPECTIVE_COLLECTION','Tissue Prospective Collection Indicator','Text indicator for the time frame of tissue procurement,indicating that the tissue was procured in parallel to the project.','STRING',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('FORM_COMPLETION_DATE','Form completion date','Form completion date','STRING',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OTHER_PATIENT_ID','Other Patient ID','Legacy DMP patient identifier (DMPnnnn)','STRING',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('DFS_MONTHS','Disease Free (Months)','Disease free (months) since initial treatment.','NUMBER',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('DFS_STATUS','Disease Free Status','Disease free status since initial treatment.','STRING',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OS_MONTHS','Overall Survival (Months)','Overall survival in months since initial diagonosis.','NUMBER',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OS_STATUS','Overall Survival Status','Overall patient survival status.','STRING',1,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OTHER_SAMPLE_ID','Other Sample ID','Legacy DMP sample identifier (DMPnnnn)','STRING',0,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('DAYS_TO_COLLECTION','Days to Sample Collection.','Days to sample collection.','STRING',0,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('IS_FFPE','Is FFPE','If the sample is from FFPE','STRING',0,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('OCT_EMBEDDED','Oct embedded','Oct embedded','STRING',0,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('PATHOLOGY_REPORT_FILE_NAME','Pathology Report File Name','Pathology Report File Name','STRING',0,'1',2); +INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('SAMPLE_TYPE','Sample Type','The type of sample (i.e.,normal,primary,met,recurrence).','STRING',0,'1',2); + +-- Add genes, genetic entities and structural variants for structural_variant +INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(21,'GENE'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(22,'GENE'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(23,'GENE'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(24,'GENE'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(25,'GENE'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(26,'GENE'); +INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(27,'GENE'); + +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(57670,'KIAA1549',21,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(8031,'NCOA4',22,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(5979,'RET',23,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(27436,'EML4',24,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(238,'ALK',25,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(7113,'TMPRSS2',26,'protein-coding'); +INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE) VALUES(2078,'ERG',27,'protein-coding'); + +INSERT INTO structural_variant (INTERNAL_ID, GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION, SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION, NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION, EVENT_INFO, COMMENTS, EXTERNAL_ANNOTATION) + VALUES(1, 7, 1, 57670, 'ENST00000242365', 15, '7', 138536968, 'KIAA1549-BRAF.K16B10.COSF509_1', 673, 'ENST00000288602', 10, '7' , 140482957, 'KIAA1549-BRAF.K16B10.COSF509_2', 'GRCh37', 'no', 'yes', 100000, 90000, 'KIAA1549-BRAF.K16B10.COSF509', 'Fusion', 'Gain-of-Function', 'COSMIC:COSF509'); +INSERT INTO structural_variant (GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION, SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION, NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION, EVENT_INFO, COMMENTS, EXTERNAL_ANNOTATION) + VALUES(7, 1, 8031, 'ENST00000344348', 7, '10', 51582939, 'NCOA4-RET.N7R12_1', 5979, 'ENST00000340058', 12, '10', 43612031, 'NCOA4-RET.N7R12_2', 'GRCh37', 'no', 'yes', 100001, 80000, 'NCOA4-RET.N7R1', 'Fusion', 'Gain-of-Function', NULL); +INSERT INTO structural_variant (GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION, SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION, NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION, EVENT_INFO, COMMENTS, EXTERNAL_ANNOTATION) + VALUES(7, 1, 27436, 'ENST00000318522', 6, '2', 42492091, 'EML4-ALK.E6bA20.AB374362_1', 238, 'ENST00000389048', 20, '2', 29446394, 'EML4-ALK.E6bA20.AB374362_2', 'GRCh37', 'no', 'yes', 100002, 70000, 'EML4-ALK.E6bA20.AB374362', 'Fusion', 'Gain-of-Function', 'GENBANK:AB374362'); +INSERT INTO structural_variant (GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION, SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION, NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION, EVENT_INFO, COMMENTS, EXTERNAL_ANNOTATION) + VALUES(7, 1, 7113, 'ENST00000332149', 1, '21', 42880007, 'TMPRSS2-ERG.T1E2.COSF23.1_1', 2078, 'ENST00000442448', 2, '21', 39956869, 'TMPRSS2-ERG.T1E2.COSF23.1_2', 'GRCh37', 'no', 'yes', 100003, 60000, 'TMPRSS2-ERG.T1E2.COSF23.1', 'Fusion', 'Gain-of-Function', 'COSMIC:COSF23'); +INSERT INTO structural_variant (GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION, SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION, NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION, EVENT_INFO, COMMENTS, EXTERNAL_ANNOTATION) + VALUES(7, 2, 57670, 'ENST00000242365', 15, '7', 138536968, 'KIAA1549-BRAF.K16B10.COSF509_1', 673, 'ENST00000288602', 10, '7' , 140482957, 'KIAA1549-BRAF.K16B10.COSF509_2', 'GRCh37', 'no', 'yes', 100000, 90000, 'KIAA1549-BRAF.K16B10.COSF509', 'Fusion', 'Gain-of-Function', 'COSMIC:COSF509'); +INSERT INTO structural_variant (GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION, SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION, NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION, EVENT_INFO, COMMENTS, EXTERNAL_ANNOTATION) + VALUES(8, 15, 57670, 'ENST00000242365', 15, '7', 138536968, 'KIAA1549-BRAF.K16B10.COSF509_1', 673, 'ENST00000288602', 10, '7' , 140482957, 'KIAA1549-BRAF.K16B10.COSF509_2', 'GRCh37', 'no', 'yes', 100000, 90000, 'KIAA1549-BRAF.K16B10.COSF509', 'Fusion', 'Gain-of-Function', 'COSMIC:COSF509'); +INSERT INTO structural_variant (GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION, SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION, NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION, EVENT_INFO, COMMENTS, EXTERNAL_ANNOTATION) + VALUES(8, 15, 8031, 'ENST00000344348', 7, '10', 51582939, 'NCOA4-RET.N7R12_1', 5979, 'ENST00000340058', 12, '10', 43612031, 'NCOA4-RET.N7R12_2', 'GRCh37', 'no', 'yes', 100001, 80000, 'NCOA4-RET.N7R1', 'Fusion', 'Gain-of-Function', NULL); + +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (1,7,1, 'Putative_Passenger', 'Pathogenic', 'Tier 1', 'Potentially Actionable'); + +INSERT INTO mut_sig (CANCER_STUDY_ID,ENTREZ_GENE_ID,RANK,NumBasesCovered,NumMutations,P_VALUE,Q_VALUE) VALUES (1,207,1,998421,17,0.00000315,0.00233); +INSERT INTO mut_sig (CANCER_STUDY_ID,ENTREZ_GENE_ID,RANK,NumBasesCovered,NumMutations,P_VALUE,Q_VALUE) VALUES (1,208,2,3200341,351,0.000000012,0.00000000000212); + +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (2,1,'-0.4674,-0.6270,-1.2266,-1.2479,-1.2262,0.6962,-0.3338,-0.1264,0.7559,-1.1267,-0.5893,-1.1546,-1.0027,-1.3157,'); +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (2,2,'1.4146,-0.0662,-0.8585,-1.6576,-0.3552,-0.8306,0.8102,0.1146,0.3498,0.0349,0.4927,-0.8665,-0.4754,-0.7221,'); +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (3,2,'-0.8097,0.7360,-1.0225,-0.8922,0.7247,0.3537,1.2702,-0.1419,'); + +INSERT INTO cna_event (CNA_EVENT_ID,ENTREZ_GENE_ID,ALTERATION) VALUES (1,207,-2); +INSERT INTO cna_event (CNA_EVENT_ID,ENTREZ_GENE_ID,ALTERATION) VALUES (2,208,2); +INSERT INTO cna_event (CNA_EVENT_ID,ENTREZ_GENE_ID,ALTERATION) VALUES (3,207,2); + +INSERT INTO sample_cna_event (CNA_EVENT_ID,SAMPLE_ID,GENETIC_PROFILE_ID) VALUES (1,1,2); +INSERT INTO sample_cna_event (CNA_EVENT_ID,SAMPLE_ID,GENETIC_PROFILE_ID) VALUES (2,1,2); +INSERT INTO sample_cna_event (CNA_EVENT_ID,SAMPLE_ID,GENETIC_PROFILE_ID) VALUES (3,2,2); + +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (1,2,1, 'Putative_Driver', 'Pathogenic', 'Tier 1', 'Highly Actionable'); +INSERT INTO alteration_driver_annotation (ALTERATION_EVENT_ID,GENETIC_PROFILE_ID,SAMPLE_ID, DRIVER_FILTER, DRIVER_FILTER_ANNOTATION, DRIVER_TIERS_FILTER, DRIVER_TIERS_FILTER_ANNOTATION) VALUES (3,2,2, 'Putative_Passenger', 'Pathogenic', 'Tier 2', 'Potentially Actionable'); + +INSERT INTO gistic (GISTIC_ROI_ID,CANCER_STUDY_ID,CHROMOSOME,CYTOBAND,WIDE_PEAK_START,WIDE_PEAK_END,Q_VALUE,AMP) VALUES (1,1,1,'1q32.32',123,136,0.0208839997649193,0); +INSERT INTO gistic (GISTIC_ROI_ID,CANCER_STUDY_ID,CHROMOSOME,CYTOBAND,WIDE_PEAK_START,WIDE_PEAK_END,Q_VALUE,AMP) VALUES (2,1,2,'2q30.32',324234,324280,0.000323799991747364,1); +INSERT INTO gistic (GISTIC_ROI_ID,CANCER_STUDY_ID,CHROMOSOME,CYTOBAND,WIDE_PEAK_START,WIDE_PEAK_END,Q_VALUE,AMP) VALUES (3,2,1,'1q3.32',123,136,0.000000129710002738648,0); + +INSERT INTO gistic_to_gene (GISTIC_ROI_ID,ENTREZ_GENE_ID) VALUES (1,207); +INSERT INTO gistic_to_gene (GISTIC_ROI_ID,ENTREZ_GENE_ID) VALUES (1,208); +INSERT INTO gistic_to_gene (GISTIC_ROI_ID,ENTREZ_GENE_ID) VALUES (2,207); +INSERT INTO gistic_to_gene (GISTIC_ROI_ID,ENTREZ_GENE_ID) VALUES (3,208); + +INSERT INTO clinical_event (CLINICAL_EVENT_ID,PATIENT_ID,START_DATE,STOP_DATE,EVENT_TYPE) VALUES (1,1,123,NULL,'STATUS'); +INSERT INTO clinical_event (CLINICAL_EVENT_ID,PATIENT_ID,START_DATE,STOP_DATE,EVENT_TYPE) VALUES (2,1,233,345,'SPECIMEN'); +INSERT INTO clinical_event (CLINICAL_EVENT_ID,PATIENT_ID,START_DATE,STOP_DATE,EVENT_TYPE) VALUES (3,2,213,445,'TREATMENT'); +INSERT INTO clinical_event (CLINICAL_EVENT_ID,PATIENT_ID,START_DATE,STOP_DATE,EVENT_TYPE) VALUES (4,2,211,441,'SEQENCING'); + +INSERT INTO clinical_event_data (CLINICAL_EVENT_ID,KEY,VALUE) VALUES (1,'STATUS','radiographic_progression'); +INSERT INTO clinical_event_data (CLINICAL_EVENT_ID,KEY,VALUE) VALUES (1,'SAMPLE_ID','TCGA-A1-A0SB-01'); +INSERT INTO clinical_event_data (CLINICAL_EVENT_ID,KEY,VALUE) VALUES (2,'SURGERY','OA II Initial'); +INSERT INTO clinical_event_data (CLINICAL_EVENT_ID,KEY,VALUE) VALUES (3,'EVENT_TYPE_DETAILED','AA III Recurrence1'); +INSERT INTO clinical_event_data (CLINICAL_EVENT_ID,KEY,VALUE) VALUES (3,'AGENT','Madeupanib'); +INSERT INTO clinical_event_data (CLINICAL_EVENT_ID,KEY,VALUE) VALUES (3,'SAMPLE_ID','TCGA-A1-A0SD-01'); +INSERT INTO clinical_event_data (CLINICAL_EVENT_ID,KEY,VALUE) VALUES (4,'SAMPLE_ID','TCGA-A1-A0SD-01'); + +INSERT INTO geneset (ID,GENETIC_ENTITY_ID,EXTERNAL_ID,NAME,DESCRIPTION,REF_LINK) VALUES (1,17,'MORF_ATRX','MORF ATRX name','Morf description','https://morf_link'); +INSERT INTO geneset (ID,GENETIC_ENTITY_ID,EXTERNAL_ID,NAME,DESCRIPTION,REF_LINK) VALUES (2,18,'HINATA_NFKB_MATRIX','HINATA NFKB MATRIX name','Hinata description','https://hinata_link'); + +INSERT INTO geneset_gene (GENESET_ID,ENTREZ_GENE_ID) VALUES (1,207); +INSERT INTO geneset_gene (GENESET_ID,ENTREZ_GENE_ID) VALUES (1,208); +INSERT INTO geneset_gene (GENESET_ID,ENTREZ_GENE_ID) VALUES (1,10000); +INSERT INTO geneset_gene (GENESET_ID,ENTREZ_GENE_ID) VALUES (2,369); +INSERT INTO geneset_gene (GENESET_ID,ENTREZ_GENE_ID) VALUES (2,472); + +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (9,17,'-0.0670,-0.6270,-1.2266,-1.2079,-1.2262,0.6962,-0.3338,-0.1260,0.7559,-1.1267,-0.5893,-1.1506,-1.0027,-1.3157,'); +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (9,18,'1.0106,-0.0662,-0.8585,-1.6576,-0.3552,-0.8306,0.8102,0.1106,0.3098,0.0309,0.0927,-0.8665,-0.0750,-0.7221,'); + + +-- Root node -> sub node A -> parent node 1 -> MORF_ATRX +-- " " " -> HINATA_NFKB_MATRIX +-- " " -> parent node 2 -> HINATA_NFKB_MATRIX +-- Root node -> sub node B -> x (dead branch) +INSERT INTO geneset_hierarchy_node (NODE_ID,NODE_NAME,PARENT_ID) VALUES (1,'Root node',NULL); +INSERT INTO geneset_hierarchy_node (NODE_ID,NODE_NAME,PARENT_ID) VALUES (2,'Sub node A',1); +INSERT INTO geneset_hierarchy_node (NODE_ID,NODE_NAME,PARENT_ID) VALUES (3,'Sub node B',1); +INSERT INTO geneset_hierarchy_node (NODE_ID,NODE_NAME,PARENT_ID) VALUES (4,'Parent node 1',2); +INSERT INTO geneset_hierarchy_node (NODE_ID,NODE_NAME,PARENT_ID) VALUES (5,'Parent node 2',2); + +INSERT INTO geneset_hierarchy_leaf (NODE_ID,GENESET_ID) VALUES (4,1); +INSERT INTO geneset_hierarchy_leaf (NODE_ID,GENESET_ID) VALUES (4,2); +INSERT INTO geneset_hierarchy_leaf (NODE_ID,GENESET_ID) VALUES (5,2); + +INSERT INTO mutation_count_by_keyword (GENETIC_PROFILE_ID,KEYWORD,ENTREZ_GENE_ID,KEYWORD_COUNT,GENE_COUNT) VALUES (6, 'AKT1 truncating', 207, 54, 64); +INSERT INTO mutation_count_by_keyword (GENETIC_PROFILE_ID,KEYWORD,ENTREZ_GENE_ID,KEYWORD_COUNT,GENE_COUNT) VALUES (6, NULL, 207, 21, 22); +INSERT INTO mutation_count_by_keyword (GENETIC_PROFILE_ID,KEYWORD,ENTREZ_GENE_ID,KEYWORD_COUNT,GENE_COUNT) VALUES (6, 'ARAF G1513 missense', 369, 1, 2); +INSERT INTO mutation_count_by_keyword (GENETIC_PROFILE_ID,KEYWORD,ENTREZ_GENE_ID,KEYWORD_COUNT,GENE_COUNT) VALUES (6, 'ARAF G1514 missense', 369, 4, 7); +INSERT INTO mutation_count_by_keyword (GENETIC_PROFILE_ID,KEYWORD,ENTREZ_GENE_ID,KEYWORD_COUNT,GENE_COUNT) VALUES (8, 'NOC2L truncating', 26155, 1, 3); + +INSERT INTO users (EMAIL, NAME, ENABLED) VALUES ('mockemail@email.com', 'MOCK USER', 1); +INSERT INTO users (EMAIL, NAME, ENABLED) VALUES ('mockemail2@email.com', 'MOCK USER 2', 1); +INSERT INTO users (EMAIL, NAME, ENABLED) VALUES ('mockemail3@email.com', 'MOCK USER 3', 1); +INSERT INTO users (EMAIL, NAME, ENABLED) VALUES ('mockemail4@email.com', 'MOCK USER 4', 1); + +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('6c9a641e-9719-4b09-974c-f17e089b37e8', 'mockemail@email.com', '2018-11-12 11:11:15+00:00', '2018-10-12 11:11:15+00:00'); +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('6c9a641e-9719-fake-data-f17e089b37e8', 'mockemail2@email.com', '2018-5-14 11:11:15+00:00', '2018-4-14 11:11:15+00:00'); +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('12345678-119e-4bC9-9a4c-f123kl9b37e8', 'mockemail3@email.com', '2017-1-12 11:11:15+00:00', '2016-12-12 11:11:15+00:00'); +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('6c9a641e-9719-4b09-974c-4rb1tr4ry5tr', 'mockemail3@email.com', '2017-10-9 11:11:15+00:00', '2017-9-9 11:11:15+00:00'); +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('1337rand-ki1n-4bna-974c-s4sk3n4rut0l', 'mockemail3@email.com', '2018-8-25 11:11:15+00:00', '2018-7-25 11:11:15+00:00'); +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('12445678-119e-4bC9-9a4c-f124kl9b47e8', 'mockemail4@email.com', '2017-1-12 11:11:15+00:00', '2016-12-12 11:11:15+00:00'); +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('6cokl41e-9719-4b09-974c-4rb1tr4ry5tr', 'mockemail4@email.com', '2017-10-9 11:11:15+00:00', '2017-9-9 11:11:15+00:00'); +INSERT INTO data_access_tokens (TOKEN, USERNAME, EXPIRATION, CREATION) VALUES ('1447rand-ki1n-4bna-974c-s4sk4n4rut0l', 'mockemail4@email.com', '2018-8-25 11:11:15+00:00', '2018-7-25 11:11:15+00:00'); + +-- treatment test data +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (1,19,'NAME','Tanespimycin'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (2,19,'DESCRIPTION','Hsp90 inhibitor'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (3,19,'URL','https://en.wikipedia.org/wiki/Tanespimycin'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (4,20,'NAME','Larotrectinib'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (5,20,'DESCRIPTION','TrkA/B/C inhibitor'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (6,20,'URL','https://en.wikipedia.org/wiki/Larotrectinib'); +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (11,19,'-0.0670,-0.6270,-1.2266,-1.2079,-1.2262,0.6962,-0.3338,-0.1260,0.7559,-1.1267,-0.5893,-1.1506,-1.0027,-1.3157,'); +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (11,20,'1.0106,-0.0662,-0.8585,-1.6576,-0.3552,-0.8306,0.8102,0.1106,0.3098,0.0309,0.0927,-0.8665,-0.0750,-0.7221,'); + +-- allele specific copy number data +INSERT INTO allele_specific_copy_number (MUTATION_EVENT_ID, GENETIC_PROFILE_ID, SAMPLE_ID, ASCN_INTEGER_COPY_NUMBER, ASCN_METHOD, CCF_EXPECTED_COPIES_UPPER, CCF_EXPECTED_COPIES, CLONAL, MINOR_COPY_NUMBER, EXPECTED_ALT_COPIES, TOTAL_COPY_NUMBER) VALUES (2040, 6, 1, 3, 'FACETS', 1.25, 1.75, 'CLONAL', 2, 1, 4); +INSERT INTO allele_specific_copy_number (MUTATION_EVENT_ID, GENETIC_PROFILE_ID, SAMPLE_ID, ASCN_INTEGER_COPY_NUMBER, ASCN_METHOD, CCF_EXPECTED_COPIES_UPPER, CCF_EXPECTED_COPIES, CLONAL, MINOR_COPY_NUMBER, EXPECTED_ALT_COPIES, TOTAL_COPY_NUMBER) VALUES (2038, 6, 6, 1, 'FACETS', 1.25, 1.75, 'SUBCLONAL', 1, 1, 2); +-- generic assay test data +-- mutational signature test data +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (7,28,'name','mean_1'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (8,28,'description','description of mean_1'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (9,29,'name','mean_2'); +INSERT INTO generic_entity_properties (ID,GENETIC_ENTITY_ID,NAME,VALUE) VALUES (10,29,'description','description of mean_2'); + +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (12,28,'-0.0670,-0.6270,-1.2266,-1.2079,-1.2262,0.6962,-0.3338,-0.1260,0.7559,-1.1267,-0.5893,-1.1506,-1.0027,-1.3157,'); +INSERT INTO genetic_alteration (GENETIC_PROFILE_ID,GENETIC_ENTITY_ID,`VALUES`) VALUES (12,29,'1.0106,-0.0662,-0.8585,-1.6576,-0.3552,-0.8306,0.8102,0.1106,0.3098,0.0309,0.0927,-0.8665,-0.0750,-0.7221,'); diff --git a/src/test/resources/logback-test.xml b/src/test/resources/logback-test.xml new file mode 100644 index 00000000000..7622b7344b2 --- /dev/null +++ b/src/test/resources/logback-test.xml @@ -0,0 +1,13 @@ + + + + + %d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n + + + + + + + + diff --git a/core/src/test/resources/logback.xml b/src/test/resources/logback.xml similarity index 100% rename from core/src/test/resources/logback.xml rename to src/test/resources/logback.xml diff --git a/web/src/test/resources/maven.properties b/src/test/resources/maven.properties similarity index 100% rename from web/src/test/resources/maven.properties rename to src/test/resources/maven.properties diff --git a/web/src/test/resources/numerical-custom-dataset-filter-applier.json b/src/test/resources/numerical-custom-dataset-filter-applier.json similarity index 100% rename from web/src/test/resources/numerical-custom-dataset-filter-applier.json rename to src/test/resources/numerical-custom-dataset-filter-applier.json diff --git a/src/test/resources/security/keycloak-configuration-generated.json b/src/test/resources/security/keycloak-configuration-generated.json new file mode 100644 index 00000000000..2f4d513791a --- /dev/null +++ b/src/test/resources/security/keycloak-configuration-generated.json @@ -0,0 +1,1904 @@ +{ + "id": "cbio", + "realm": "cbio", + "displayName": "cBioPortal", + "notBefore": 0, + "defaultSignatureAlgorithm": "RS256", + "revokeRefreshToken": false, + "refreshTokenMaxReuse": 0, + "accessTokenLifespan": 300, + "accessTokenLifespanForImplicitFlow": 900, + "ssoSessionIdleTimeout": 1800, + "ssoSessionMaxLifespan": 36000, + "ssoSessionIdleTimeoutRememberMe": 0, + "ssoSessionMaxLifespanRememberMe": 0, + "offlineSessionIdleTimeout": 2592000, + "offlineSessionMaxLifespanEnabled": false, + "offlineSessionMaxLifespan": 5184000, + "clientSessionIdleTimeout": 0, + "clientSessionMaxLifespan": 0, + "clientOfflineSessionIdleTimeout": 0, + "clientOfflineSessionMaxLifespan": 0, + "accessCodeLifespan": 60, + "accessCodeLifespanUserAction": 300, + "accessCodeLifespanLogin": 1800, + "actionTokenGeneratedByAdminLifespan": 43200, + "actionTokenGeneratedByUserLifespan": 300, + "oauth2DeviceCodeLifespan": 600, + "oauth2DevicePollingInterval": 5, + "enabled": true, + "sslRequired": "none", + "registrationAllowed": false, + "registrationEmailAsUsername": false, + "rememberMe": false, + "verifyEmail": false, + "loginWithEmailAllowed": false, + "duplicateEmailsAllowed": false, + "resetPasswordAllowed": false, + "editUsernameAllowed": false, + "bruteForceProtected": false, + "permanentLockout": false, + "maxFailureWaitSeconds": 900, + "minimumQuickLoginWaitSeconds": 60, + "waitIncrementSeconds": 60, + "quickLoginCheckMilliSeconds": 1000, + "maxDeltaTimeSeconds": 43200, + "failureFactor": 30, + "defaultRole": { + "id": "bb770785-c99d-4491-ac1c-6f1a571e43dc", + "name": "default-roles-cbio", + "description": "${role_default-roles}", + "composite": true, + "clientRole": false, + "containerId": "cbio" + }, + "defaultGroups": [ + "/PUBLIC_STUDIES" + ], + "requiredCredentials": [ + "password" + ], + "otpPolicyType": "totp", + "otpPolicyAlgorithm": "HmacSHA1", + "otpPolicyInitialCounter": 0, + "otpPolicyDigits": 6, + "otpPolicyLookAheadWindow": 1, + "otpPolicyPeriod": 30, + "otpSupportedApplications": [ + "FreeOTP", + "Google Authenticator" + ], + "webAuthnPolicyRpEntityName": "keycloak", + "webAuthnPolicySignatureAlgorithms": [ + "ES256" + ], + "webAuthnPolicyRpId": "", + "webAuthnPolicyAttestationConveyancePreference": "not specified", + "webAuthnPolicyAuthenticatorAttachment": "not specified", + "webAuthnPolicyRequireResidentKey": "not specified", + "webAuthnPolicyUserVerificationRequirement": "not specified", + "webAuthnPolicyCreateTimeout": 0, + "webAuthnPolicyAvoidSameAuthenticatorRegister": false, + "webAuthnPolicyAcceptableAaguids": [], + "webAuthnPolicyPasswordlessRpEntityName": "keycloak", + "webAuthnPolicyPasswordlessSignatureAlgorithms": [ + "ES256" + ], + "webAuthnPolicyPasswordlessRpId": "", + "webAuthnPolicyPasswordlessAttestationConveyancePreference": "not specified", + "webAuthnPolicyPasswordlessAuthenticatorAttachment": "not specified", + "webAuthnPolicyPasswordlessRequireResidentKey": "not specified", + "webAuthnPolicyPasswordlessUserVerificationRequirement": "not specified", + "webAuthnPolicyPasswordlessCreateTimeout": 0, + "webAuthnPolicyPasswordlessAvoidSameAuthenticatorRegister": false, + "webAuthnPolicyPasswordlessAcceptableAaguids": [], + "scopeMappings": [ + { + "clientScope": "offline_access", + "roles": [ + "offline_access" + ] + } + ], + "clientScopeMappings": { + "account": [ + { + "client": "account-console", + "roles": [ + "manage-account" + ] + } + ] + }, + "clients": [ + { + "id": "447cb732-9d28-411b-b712-22a7986c029e", + "clientId": "account", + "name": "${client_account}", + "rootUrl": "${authBaseUrl}", + "baseUrl": "/realms/cbio/account/", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "redirectUris": [ + "/realms/cbio/account/*" + ], + "webOrigins": [], + "notBefore": 0, + "bearerOnly": false, + "consentRequired": false, + "standardFlowEnabled": true, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": false, + "serviceAccountsEnabled": false, + "publicClient": true, + "frontchannelLogout": false, + "protocol": "openid-connect", + "attributes": {}, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": false, + "nodeReRegistrationTimeout": 0, + "defaultClientScopes": [ + "web-origins", + "roles", + "profile", + "email" + ], + "optionalClientScopes": [ + "address", + "phone", + "offline_access", + "microprofile-jwt" + ] + }, + { + "id": "fc7e8395-b7f3-43d3-9c07-3c7e3cacb7ee", + "clientId": "account-console", + "name": "${client_account-console}", + "rootUrl": "${authBaseUrl}", + "baseUrl": "/realms/cbio/account/", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "redirectUris": [ + "/realms/cbio/account/*" + ], + "webOrigins": [], + "notBefore": 0, + "bearerOnly": false, + "consentRequired": false, + "standardFlowEnabled": true, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": false, + "serviceAccountsEnabled": false, + "publicClient": true, + "frontchannelLogout": false, + "protocol": "openid-connect", + "attributes": { + "pkce.code.challenge.method": "S256" + }, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": false, + "nodeReRegistrationTimeout": 0, + "protocolMappers": [ + { + "id": "3cf582e8-7b31-448d-972b-32ce17e9527b", + "name": "audience resolve", + "protocol": "openid-connect", + "protocolMapper": "oidc-audience-resolve-mapper", + "consentRequired": false, + "config": {} + } + ], + "defaultClientScopes": [ + "web-origins", + "roles", + "profile", + "email" + ], + "optionalClientScopes": [ + "address", + "phone", + "offline_access", + "microprofile-jwt" + ] + }, + { + "id": "91156b1e-4585-440c-a706-058af196d622", + "clientId": "admin-cli", + "name": "${client_admin-cli}", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "redirectUris": [], + "webOrigins": [], + "notBefore": 0, + "bearerOnly": false, + "consentRequired": false, + "standardFlowEnabled": false, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": true, + "serviceAccountsEnabled": false, + "publicClient": true, + "frontchannelLogout": false, + "protocol": "openid-connect", + "attributes": {}, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": false, + "nodeReRegistrationTimeout": 0, + "defaultClientScopes": [ + "web-origins", + "roles", + "profile", + "email" + ], + "optionalClientScopes": [ + "address", + "phone", + "offline_access", + "microprofile-jwt" + ] + }, + { + "id": "83f338ca-c017-428e-818b-f497a4d0a493", + "clientId": "broker", + "name": "${client_broker}", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "redirectUris": [], + "webOrigins": [], + "notBefore": 0, + "bearerOnly": true, + "consentRequired": false, + "standardFlowEnabled": true, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": false, + "serviceAccountsEnabled": false, + "publicClient": false, + "frontchannelLogout": false, + "protocol": "openid-connect", + "attributes": {}, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": false, + "nodeReRegistrationTimeout": 0, + "defaultClientScopes": [ + "web-origins", + "roles", + "profile", + "email" + ], + "optionalClientScopes": [ + "address", + "phone", + "offline_access", + "microprofile-jwt" + ] + }, + { + "id": "4b5c2aa6-bc44-458d-ac1f-1a2166520f4d", + "clientId": "cbioportal", + "adminUrl": "http://host.testcontainers.internal:8080/saml", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "redirectUris": [ + "http://host.testcontainers.internal:8080/*" + ], + "webOrigins": [ + "http://host.testcontainers.internal:8080" + ], + "notBefore": 0, + "bearerOnly": false, + "consentRequired": false, + "standardFlowEnabled": true, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": false, + "serviceAccountsEnabled": false, + "publicClient": false, + "frontchannelLogout": false, + "protocol": "saml", + "attributes": { + "saml.assertion.signature": "false", + "saml.force.post.binding": "false", + "saml_single_logout_service_url_post": "http://host.testcontainers.internal:8080/logout/saml2/slo", + "signing.private.key": "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", + "saml.server.signature": "true", + "saml.signing.certificate": "MIIFazCCA1OgAwIBAgIUVMt2XXqYekaunKy/fhcJNQzJ0uQwDQYJKoZIhvcNAQELBQAwRTELMAkGA1UEBhMCQVUxEzARBgNVBAgMClNvbWUtU3RhdGUxITAfBgNVBAoMGEludGVybmV0IFdpZGdpdHMgUHR5IEx0ZDAeFw0yMTExMTkxMzUyMzFaFw0yMjExMTkxMzUyMzFaMEUxCzAJBgNVBAYTAkFVMRMwEQYDVQQIDApTb21lLVN0YXRlMSEwHwYDVQQKDBhJbnRlcm5ldCBXaWRnaXRzIFB0eSBMdGQwggIiMA0GCSqGSIb3DQEBAQUAA4ICDwAwggIKAoICAQDJTDNHzHv19kM4tVLOIjpR/vez4QJk70PMbghQBdCp1Er1yU8GkQRMx0QtumQB2ML1p2f63EEd7WsAPMEVYNQv6MHJDhAIDt+npWmYrGl3PrkVA3GNzZcD+GQEMZdGcECvfocOy2tB6iMOhdnFqu4L/QfFG2yJ+CpimpijvW78cJ35oYmOTnD7R9LBAJQuBlQDpOvB+I/dFeCiNKw61HQy0nMf6oe0pBy4E7bImQ0HY/soxBnzbvPUzbBvnhb2d97l3wn6ElUMrZuQSyI+OyVgBMyv9gcgV4Wq16oEuNkWFIdY2j8GeiDlqy9KJAttgLXBjGua2lRML0a+nrfF1VbBLgyzAZZP2IS/P3QYcSE2GbPWiWXjov2vF63/VnARzQhPhuLGilWp1Nxqr0HztgSiAyx0D3wqEBic0ERAQDVuHQZdjPd7RJaJ6MBnZH9mMVQOrjspIP5Sc6Z7omou26LPTjWNwmNWnfrq1sU8ADg4Uj09PWYcuWhPKxe6K9Zm4PLGXA0fR/fCVPDKaJPXIC7FGzDDdh/uSb9OURlgHwe319FCdvm1k7xD6tEfsyORjWJFoYvyT015j9LdBuO5fwt40EPCzNezqWCaimES7u3Puyg+4mbnRDh1UuouHOHVZ4jWySrrEktI0l6JkxrqdT2ilw7ICtmFx2fsjO9qso4tGwIDAQABo1MwUTAdBgNVHQ4EFgQU0JL52xvzhG/48H01Rxac3MOgZYEwHwYDVR0jBBgwFoAU0JL52xvzhG/48H01Rxac3MOgZYEwDwYDVR0TAQH/BAUwAwEB/zANBgkqhkiG9w0BAQsFAAOCAgEAYYbj4v37eUTo9mtWgtZ2hHjWtdScPlZGxZanPZZpAcN8JR07ps/wow68rQMOZR9hFS6c2+izbn3HkR3OwCK9sZeuWzrLVPUBSiXxEbRkpK/pXAd/Irat+f1ylA3j3J4VyDJymqiuIBOE9kzGWpbMdyqlHdH5XG/giLEOY66p6k5QrtKDXKzfQ7BBzO1WTe1BkWp7HerEKqM7mRSA4pRT5J7UAGn4gHOU39bnOHZPhko/rFagI2iO8T3fSBL+IWx76ROoG3DUnaZmDIuMxzeEZD7G8aPWOJCP0/mnBrAQhsEUg0bcsRa6qzWFigY4oWjxOSc2aQMRSjxrVf59Geplyhh8AY0yI49uhJJc6SztwuiX9fksCm1/Z9YZeeJr/oOkBduGpX6BQbPA7N2yKg5APdn8DVIHFALijwobz+94+d6uv4+ihlQ8jBgbo1kwMZps+BAVOODgX3RpFKmqcyX9bjWaapw+XE1U8Rtt3mcgN9qchvcIqcnGZ1PfaY1ultvAzUa4TCECiYRXSOXT4iAXv+M1i2XisuThtw7dC9HMY1D/0oA/cRxwknLsuKRRGJWbUN/Ts4GMjLmvKejQOWfS+/wHS9kQdPKS3BKZYQgqli4OG1xRErykL6SRWTKJA3+VNditbHFkJuL9dGZLu0Dmaww6K1SSnYai77uTTPdOHoc=", + "saml.artifact.binding.identifier": "eY7tz0hmV0aMmBtL/oU7BOy5kUY=", + "saml.signature.algorithm": "RSA_SHA256", + "saml_force_name_id_format": "true", + "saml.client.signature": "true", + "saml.authnstatement": "true", + "saml_name_id_format": "email", + "saml_signature_canonicalization_method": "http://www.w3.org/2001/10/xml-exc-c14n#" + }, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": false, + "nodeReRegistrationTimeout": -1, + "protocolMappers": [ + { + "id": "fab43918-1994-40d4-8b4c-d0e41de7d61b", + "name": "role list", + "protocol": "saml", + "protocolMapper": "saml-role-list-mapper", + "consentRequired": false, + "config": { + "single": "false", + "attribute.nameformat": "Basic", + "attribute.name": "Role" + } + }, + { + "id": "ef7aa6fb-3bbe-478b-808e-6d56d5c8c87c", + "name": "X500 email", + "protocol": "saml", + "protocolMapper": "saml-user-property-mapper", + "consentRequired": false, + "config": { + "attribute.nameformat": "Basic", + "user.attribute": "email", + "friendly.name": "email", + "attribute.name": "email" + } + } + ], + "defaultClientScopes": [], + "optionalClientScopes": [] + }, + { + "id": "f6045634-733c-43e6-9ec5-baabd518db6c", + "clientId": "cbioportal_oauth2", + "name": "cBioPortal OIDC client", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "secret": "client_secret", + "redirectUris": [ + "http://host.testcontainers.internal:8080/*" + ], + "webOrigins": [ + "http://host.testcontainers.internal:8080" + ], + "notBefore": 0, + "bearerOnly": false, + "consentRequired": false, + "standardFlowEnabled": true, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": false, + "serviceAccountsEnabled": false, + "publicClient": false, + "frontchannelLogout": false, + "protocol": "openid-connect", + "attributes": {}, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": true, + "nodeReRegistrationTimeout": -1, + "protocolMappers": [ + { + "id": "08812f2b-f12f-4460-93d0-ca9d5fadf4b8", + "name": "cbioportal_api_audience", + "protocol": "openid-connect", + "protocolMapper": "oidc-audience-mapper", + "consentRequired": false, + "config": { + "included.client.audience": "cbioportal_api", + "id.token.claim": "false", + "access.token.claim": "true", + "userinfo.token.claim": "false" + } + } + ], + "defaultClientScopes": [ + "email" + ], + "optionalClientScopes": [ + "offline_access", + "roles" + ] + }, + { + "id": "8d317944-4523-43e9-a198-431be79edb0f", + "clientId": "realm-management", + "name": "${client_realm-management}", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "redirectUris": [], + "webOrigins": [], + "notBefore": 0, + "bearerOnly": true, + "consentRequired": false, + "standardFlowEnabled": true, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": false, + "serviceAccountsEnabled": false, + "publicClient": false, + "frontchannelLogout": false, + "protocol": "openid-connect", + "attributes": {}, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": false, + "nodeReRegistrationTimeout": 0, + "defaultClientScopes": [ + "web-origins", + "roles", + "profile", + "email" + ], + "optionalClientScopes": [ + "address", + "phone", + "offline_access", + "microprofile-jwt" + ] + }, + { + "id": "0f4c7e47-9f6b-4171-8290-283f62d02701", + "clientId": "security-admin-console", + "name": "${client_security-admin-console}", + "rootUrl": "${authAdminUrl}", + "baseUrl": "/admin/cbio/console/", + "surrogateAuthRequired": false, + "enabled": true, + "alwaysDisplayInConsole": false, + "clientAuthenticatorType": "client-secret", + "redirectUris": [ + "/admin/cbio/console/*" + ], + "webOrigins": [ + "+" + ], + "notBefore": 0, + "bearerOnly": false, + "consentRequired": false, + "standardFlowEnabled": true, + "implicitFlowEnabled": false, + "directAccessGrantsEnabled": false, + "serviceAccountsEnabled": false, + "publicClient": true, + "frontchannelLogout": false, + "protocol": "openid-connect", + "attributes": { + "pkce.code.challenge.method": "S256" + }, + "authenticationFlowBindingOverrides": {}, + "fullScopeAllowed": false, + "nodeReRegistrationTimeout": 0, + "protocolMappers": [ + { + "id": "831f7ad1-c369-4237-942f-88626cec64e3", + "name": "locale", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "locale", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "locale", + "jsonType.label": "String" + } + } + ], + "defaultClientScopes": [ + "web-origins", + "roles", + "profile", + "email" + ], + "optionalClientScopes": [ + "address", + "phone", + "offline_access", + "microprofile-jwt" + ] + } + ], + "clientScopes": [ + { + "id": "6624568b-9db3-46ab-9d95-8419753ad28c", + "name": "role_list", + "description": "SAML role list", + "protocol": "saml", + "attributes": { + "consent.screen.text": "${samlRoleListScopeConsentText}", + "display.on.consent.screen": "true" + }, + "protocolMappers": [ + { + "id": "564b568d-911b-442a-a490-a423d974caef", + "name": "role list", + "protocol": "saml", + "protocolMapper": "saml-role-list-mapper", + "consentRequired": false, + "config": { + "single": "false", + "attribute.nameformat": "Basic", + "attribute.name": "Role" + } + } + ] + }, + { + "id": "2c2c551a-e90f-4adc-b09a-12421ecfc1f2", + "name": "microprofile-jwt", + "description": "Microprofile - JWT built-in scope", + "protocol": "openid-connect", + "attributes": { + "include.in.token.scope": "true", + "display.on.consent.screen": "false" + }, + "protocolMappers": [ + { + "id": "d9dbf260-7b93-4044-ba15-68bc45facc72", + "name": "groups", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-realm-role-mapper", + "consentRequired": false, + "config": { + "multivalued": "true", + "user.attribute": "foo", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "groups", + "jsonType.label": "String" + } + }, + { + "id": "f4a0ae6d-2f2d-48d4-a55e-d9860b2e348d", + "name": "upn", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-property-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "username", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "upn", + "jsonType.label": "String" + } + } + ] + }, + { + "id": "efd3125c-7be3-4550-9862-3ec9039102e8", + "name": "offline_access", + "description": "OpenID Connect built-in scope: offline_access", + "protocol": "openid-connect", + "attributes": { + "consent.screen.text": "${offlineAccessScopeConsentText}", + "display.on.consent.screen": "true" + } + }, + { + "id": "2cbfef6c-ea0d-4fc0-a386-17986ce68c8f", + "name": "web-origins", + "description": "OpenID Connect scope for add allowed web origins to the access token", + "protocol": "openid-connect", + "attributes": { + "include.in.token.scope": "false", + "display.on.consent.screen": "false", + "consent.screen.text": "" + }, + "protocolMappers": [ + { + "id": "c362e4af-0bca-4cda-8ce8-08fbe6ed93b7", + "name": "allowed web origins", + "protocol": "openid-connect", + "protocolMapper": "oidc-allowed-origins-mapper", + "consentRequired": false, + "config": {} + } + ] + }, + { + "id": "261ac9c1-0f3e-43fb-b85c-6ef615631051", + "name": "phone", + "description": "OpenID Connect built-in scope: phone", + "protocol": "openid-connect", + "attributes": { + "include.in.token.scope": "true", + "display.on.consent.screen": "true", + "consent.screen.text": "${phoneScopeConsentText}" + }, + "protocolMappers": [ + { + "id": "03c75c00-2b46-4cfc-85b0-37813f4730c8", + "name": "phone number", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "phoneNumber", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "phone_number", + "jsonType.label": "String" + } + }, + { + "id": "5b81ae41-fb64-4e5e-9165-ecd74d27160c", + "name": "phone number verified", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "phoneNumberVerified", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "phone_number_verified", + "jsonType.label": "boolean" + } + } + ] + }, + { + "id": "38806f4c-bff9-41c6-b111-36dd67953b13", + "name": "roles", + "description": "OpenID Connect scope for add user roles to the access token", + "protocol": "openid-connect", + "attributes": { + "include.in.token.scope": "false", + "display.on.consent.screen": "true", + "consent.screen.text": "${rolesScopeConsentText}" + }, + "protocolMappers": [ + { + "id": "39bdb32a-43e9-4193-ab6d-73315dd1edb2", + "name": "audience resolve", + "protocol": "openid-connect", + "protocolMapper": "oidc-audience-resolve-mapper", + "consentRequired": false, + "config": {} + }, + { + "id": "4e09ee37-8e25-4335-a98b-c88945ab00b4", + "name": "realm roles", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-realm-role-mapper", + "consentRequired": false, + "config": { + "user.attribute": "foo", + "access.token.claim": "true", + "claim.name": "realm_access.roles", + "jsonType.label": "String", + "multivalued": "true" + } + }, + { + "id": "dbcdd3b9-3fbb-46bb-b0eb-e924d7982c1a", + "name": "client roles", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-client-role-mapper", + "consentRequired": false, + "config": { + "multivalued": "true", + "userinfo.token.claim": "true", + "user.attribute": "foo", + "access.token.claim": "true", + "claim.name": "resource_access.${client_id}.roles", + "jsonType.label": "String" + } + } + ] + }, + { + "id": "ba043066-3611-44f3-8ce7-0d63ee7214e6", + "name": "email", + "description": "OpenID Connect built-in scope: email", + "protocol": "openid-connect", + "attributes": { + "include.in.token.scope": "true", + "display.on.consent.screen": "true", + "consent.screen.text": "${emailScopeConsentText}" + }, + "protocolMappers": [ + { + "id": "3a55b7fa-84bd-4f68-9ed2-34359b04c3c2", + "name": "email", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-property-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "email", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "email", + "jsonType.label": "String" + } + }, + { + "id": "09fc3174-1c39-4a98-8727-8571d7196213", + "name": "email verified", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-property-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "emailVerified", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "email_verified", + "jsonType.label": "boolean" + } + } + ] + }, + { + "id": "39463f1e-621e-411a-8820-a9b83d579fc5", + "name": "profile", + "description": "OpenID Connect built-in scope: profile", + "protocol": "openid-connect", + "attributes": { + "include.in.token.scope": "true", + "display.on.consent.screen": "true", + "consent.screen.text": "${profileScopeConsentText}" + }, + "protocolMappers": [ + { + "id": "c65a4612-d8e1-4588-886b-8e7946acf5a9", + "name": "full name", + "protocol": "openid-connect", + "protocolMapper": "oidc-full-name-mapper", + "consentRequired": false, + "config": { + "id.token.claim": "true", + "access.token.claim": "true", + "userinfo.token.claim": "true" + } + }, + { + "id": "78ec825f-a961-490e-8128-659d1d70c4e6", + "name": "birthdate", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "birthdate", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "birthdate", + "jsonType.label": "String" + } + }, + { + "id": "65cae517-5bf6-4af0-90da-7ed6cff2a6a3", + "name": "username", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-property-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "username", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "preferred_username", + "jsonType.label": "String" + } + }, + { + "id": "4bd831ec-e2db-45b8-8d20-c2636d9b592e", + "name": "profile", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "profile", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "profile", + "jsonType.label": "String" + } + }, + { + "id": "8275c531-59cd-450a-9499-53549aedda41", + "name": "gender", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "gender", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "gender", + "jsonType.label": "String" + } + }, + { + "id": "aa3a327a-7039-4f67-94ae-972d5be7b1af", + "name": "zoneinfo", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "zoneinfo", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "zoneinfo", + "jsonType.label": "String" + } + }, + { + "id": "97591cbb-a403-49b2-8f34-192913218437", + "name": "website", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "website", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "website", + "jsonType.label": "String" + } + }, + { + "id": "bedf23ca-a1fd-40a5-8acb-19bedf7da354", + "name": "picture", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "picture", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "picture", + "jsonType.label": "String" + } + }, + { + "id": "40988b4c-3c7f-415c-9bf5-f4463b611fc2", + "name": "family name", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-property-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "lastName", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "family_name", + "jsonType.label": "String" + } + }, + { + "id": "d3f3f74d-c9ab-4d0a-8ebd-51673cdbf151", + "name": "updated at", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "updatedAt", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "updated_at", + "jsonType.label": "String" + } + }, + { + "id": "1973c75f-bc92-48a4-ac74-fb900dabe17a", + "name": "given name", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-property-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "firstName", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "given_name", + "jsonType.label": "String" + } + }, + { + "id": "321e898f-d85c-4d8e-9900-1cf94b49fff1", + "name": "middle name", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "middleName", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "middle_name", + "jsonType.label": "String" + } + }, + { + "id": "bb4b6b50-8cc9-45b3-be23-6a2671f0bcf0", + "name": "locale", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "locale", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "locale", + "jsonType.label": "String" + } + }, + { + "id": "ddaf0658-e10d-4a8a-8657-16c69eaa7d1e", + "name": "nickname", + "protocol": "openid-connect", + "protocolMapper": "oidc-usermodel-attribute-mapper", + "consentRequired": false, + "config": { + "userinfo.token.claim": "true", + "user.attribute": "nickname", + "id.token.claim": "true", + "access.token.claim": "true", + "claim.name": "nickname", + "jsonType.label": "String" + } + } + ] + }, + { + "id": "17e90911-d87b-44de-9448-8e8ed92c5ae7", + "name": "address", + "description": "OpenID Connect built-in scope: address", + "protocol": "openid-connect", + "attributes": { + "include.in.token.scope": "true", + "display.on.consent.screen": "true", + "consent.screen.text": "${addressScopeConsentText}" + }, + "protocolMappers": [ + { + "id": "a0e1d5be-5d5f-49b1-8467-9052561914e9", + "name": "address", + "protocol": "openid-connect", + "protocolMapper": "oidc-address-mapper", + "consentRequired": false, + "config": { + "user.attribute.formatted": "formatted", + "user.attribute.country": "country", + "user.attribute.postal_code": "postal_code", + "userinfo.token.claim": "true", + "user.attribute.street": "street", + "id.token.claim": "true", + "user.attribute.region": "region", + "access.token.claim": "true", + "user.attribute.locality": "locality" + } + } + ] + } + ], + "defaultDefaultClientScopes": [ + "web-origins", + "roles", + "profile", + "role_list", + "email" + ], + "defaultOptionalClientScopes": [ + "address", + "phone", + "microprofile-jwt", + "offline_access" + ], + "browserSecurityHeaders": { + "contentSecurityPolicyReportOnly": "", + "xContentTypeOptions": "nosniff", + "xRobotsTag": "none", + "xFrameOptions": "SAMEORIGIN", + "contentSecurityPolicy": "frame-src 'self'; frame-ancestors 'self'; object-src 'none';", + "xXSSProtection": "1; mode=block", + "strictTransportSecurity": "max-age=31536000; includeSubDomains" + }, + "smtpServer": {}, + "eventsEnabled": false, + "eventsListeners": [ + "jboss-logging" + ], + "enabledEventTypes": [], + "adminEventsEnabled": false, + "adminEventsDetailsEnabled": false, + "identityProviders": [], + "identityProviderMappers": [], + "components": { + "org.keycloak.services.clientregistration.policy.ClientRegistrationPolicy": [ + { + "id": "889a17cb-5649-4149-8582-33076c1c3317", + "name": "Allowed Client Scopes", + "providerId": "allowed-client-templates", + "subType": "authenticated", + "subComponents": {}, + "config": { + "allow-default-scopes": [ + "true" + ] + } + }, + { + "id": "4c79fd7c-b4fe-470d-8786-f58ab99a518e", + "name": "Allowed Client Scopes", + "providerId": "allowed-client-templates", + "subType": "anonymous", + "subComponents": {}, + "config": { + "allow-default-scopes": [ + "true" + ] + } + }, + { + "id": "6fbe15a3-e5b2-4342-97cb-bde10366963c", + "name": "Allowed Protocol Mapper Types", + "providerId": "allowed-protocol-mappers", + "subType": "authenticated", + "subComponents": {}, + "config": { + "allowed-protocol-mapper-types": [ + "saml-user-attribute-mapper", + "oidc-full-name-mapper", + "oidc-usermodel-attribute-mapper", + "saml-user-property-mapper", + "oidc-address-mapper", + "oidc-sha256-pairwise-sub-mapper", + "oidc-usermodel-property-mapper", + "saml-role-list-mapper" + ] + } + }, + { + "id": "c7824d6e-b0e6-49cc-bff6-68b2f011a542", + "name": "Trusted Hosts", + "providerId": "trusted-hosts", + "subType": "anonymous", + "subComponents": {}, + "config": { + "host-sending-registration-request-must-match": [ + "true" + ], + "client-uris-must-match": [ + "true" + ] + } + }, + { + "id": "196f1f2a-bc8b-425a-89d9-86cdfb20fcfd", + "name": "Max Clients Limit", + "providerId": "max-clients", + "subType": "anonymous", + "subComponents": {}, + "config": { + "max-clients": [ + "200" + ] + } + }, + { + "id": "9e90ed2b-a6a2-42fd-988e-58ea0ddeb63d", + "name": "Allowed Protocol Mapper Types", + "providerId": "allowed-protocol-mappers", + "subType": "anonymous", + "subComponents": {}, + "config": { + "allowed-protocol-mapper-types": [ + "oidc-full-name-mapper", + "saml-role-list-mapper", + "oidc-sha256-pairwise-sub-mapper", + "saml-user-property-mapper", + "saml-user-attribute-mapper", + "oidc-usermodel-attribute-mapper", + "oidc-address-mapper", + "oidc-usermodel-property-mapper" + ] + } + }, + { + "id": "2ce4cd15-6601-482f-81e2-c7c5621e06f9", + "name": "Full Scope Disabled", + "providerId": "scope", + "subType": "anonymous", + "subComponents": {}, + "config": {} + }, + { + "id": "1375acc0-7aa9-4b3f-a0c0-a40c290e3f73", + "name": "Consent Required", + "providerId": "consent-required", + "subType": "anonymous", + "subComponents": {}, + "config": {} + } + ], + "org.keycloak.keys.KeyProvider": [ + { + "id": "53680454-4c6c-4486-861f-e5e74befe868", + "name": "hmac-generated", + "providerId": "hmac-generated", + "subComponents": {}, + "config": { + "priority": [ + "100" + ], + "algorithm": [ + "HS256" + ] + } + }, + { + "id": "e684156b-42ad-4576-b047-e1cb35f3fc05", + "name": "rsa-generated", + "providerId": "rsa-generated", + "subComponents": {}, + "config": { + "keyUse": [ + "sig" + ], + "priority": [ + "100" + ] + } + }, + { + "id": "014ff5f5-de31-48d2-952f-1445e8da62e1", + "name": "aes-generated", + "providerId": "aes-generated", + "subComponents": {}, + "config": { + "priority": [ + "100" + ] + } + }, + { + "id": "557a3a1f-1036-4fd5-8656-35ef6c482f50", + "name": "rsa-enc-generated", + "providerId": "rsa-generated", + "subComponents": {}, + "config": { + "keyUse": [ + "enc" + ], + "priority": [ + "100" + ] + } + } + ] + }, + "internationalizationEnabled": false, + "supportedLocales": [], + "authenticationFlows": [ + { + "id": "d09f86a8-3eb7-4b08-8c02-36a56f6a2a2c", + "alias": "Account verification options", + "description": "Method with which to verity the existing account", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "idp-email-verification", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "ALTERNATIVE", + "priority": 20, + "flowAlias": "Verify Existing Account by Re-authentication", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "3801ca86-b775-4af6-a7cc-a5125e1a67b1", + "alias": "Authentication Options", + "description": "Authentication options.", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "basic-auth", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "basic-auth-otp", + "authenticatorFlow": false, + "requirement": "DISABLED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "auth-spnego", + "authenticatorFlow": false, + "requirement": "DISABLED", + "priority": 30, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "2f229147-9906-45ed-bbf9-a7cb9e0a6650", + "alias": "Browser - Conditional OTP", + "description": "Flow to determine if the OTP is required for the authentication", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "conditional-user-configured", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "auth-otp-form", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "50e71410-d2fd-4b68-8972-c9e49ecee7c0", + "alias": "Direct Grant - Conditional OTP", + "description": "Flow to determine if the OTP is required for the authentication", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "conditional-user-configured", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "direct-grant-validate-otp", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "7f4cfad2-bd68-4ac4-8d8d-d22ed18214fe", + "alias": "First broker login - Conditional OTP", + "description": "Flow to determine if the OTP is required for the authentication", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "conditional-user-configured", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "auth-otp-form", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "dbbb7d22-5602-4ce4-aa53-40bf6391b50c", + "alias": "Handle Existing Account", + "description": "Handle what to do if there is existing account with same email/username like authenticated identity provider", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "idp-confirm-link", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "REQUIRED", + "priority": 20, + "flowAlias": "Account verification options", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "6e414865-f4f0-4295-83f4-ca5edce533f0", + "alias": "Reset - Conditional OTP", + "description": "Flow to determine if the OTP should be reset or not. Set to REQUIRED to force.", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "conditional-user-configured", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "reset-otp", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "85f5eeb7-78e7-4ef4-962e-c23fba388dd6", + "alias": "User creation or linking", + "description": "Flow for the existing/non-existing user alternatives", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticatorConfig": "create unique user config", + "authenticator": "idp-create-user-if-unique", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "ALTERNATIVE", + "priority": 20, + "flowAlias": "Handle Existing Account", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "4e9649e7-a343-4f82-8293-c020c26e14d5", + "alias": "Verify Existing Account by Re-authentication", + "description": "Reauthentication of existing account", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "idp-username-password-form", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "CONDITIONAL", + "priority": 20, + "flowAlias": "First broker login - Conditional OTP", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "c4297697-2daf-4b81-9340-2244f5f6f4d1", + "alias": "browser", + "description": "browser based authentication", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "auth-cookie", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "auth-spnego", + "authenticatorFlow": false, + "requirement": "DISABLED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "identity-provider-redirector", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 25, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "ALTERNATIVE", + "priority": 30, + "flowAlias": "forms", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "c9f07e45-6e38-45e8-938d-7314d2596b63", + "alias": "clients", + "description": "Base authentication for clients", + "providerId": "client-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "client-secret", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "client-jwt", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "client-secret-jwt", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 30, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "client-x509", + "authenticatorFlow": false, + "requirement": "ALTERNATIVE", + "priority": 40, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "55cf854b-47fb-4b05-9eef-6840f92fee79", + "alias": "direct grant", + "description": "OpenID Connect Resource Owner Grant", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "direct-grant-validate-username", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "direct-grant-validate-password", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "CONDITIONAL", + "priority": 30, + "flowAlias": "Direct Grant - Conditional OTP", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "14fe6c33-9d93-4c95-988b-d5e0a1d2fe4b", + "alias": "docker auth", + "description": "Used by Docker clients to authenticate against the IDP", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "docker-http-basic-authenticator", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "bce646e3-ebd1-4d8e-8703-ea91621f3550", + "alias": "first broker login", + "description": "Actions taken after first broker login with identity provider account, which is not yet linked to any Keycloak account", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticatorConfig": "review profile config", + "authenticator": "idp-review-profile", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "REQUIRED", + "priority": 20, + "flowAlias": "User creation or linking", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "fae27840-4d5e-4a27-a1b5-1b44414b776f", + "alias": "forms", + "description": "Username, password, otp and other auth forms.", + "providerId": "basic-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "auth-username-password-form", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "CONDITIONAL", + "priority": 20, + "flowAlias": "Browser - Conditional OTP", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "d391fa3e-0975-4db4-8ab1-d2f8348ed395", + "alias": "http challenge", + "description": "An authentication flow based on challenge-response HTTP Authentication Schemes", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "no-cookie-redirect", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "REQUIRED", + "priority": 20, + "flowAlias": "Authentication Options", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "380a97f7-a283-4716-88e9-c21e5efd3867", + "alias": "registration", + "description": "registration flow", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "registration-page-form", + "authenticatorFlow": true, + "requirement": "REQUIRED", + "priority": 10, + "flowAlias": "registration form", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "0a5ea500-02e9-490a-9cb4-b7d030ed3372", + "alias": "registration form", + "description": "registration form", + "providerId": "form-flow", + "topLevel": false, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "registration-user-creation", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "registration-profile-action", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 40, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "registration-password-action", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 50, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "registration-recaptcha-action", + "authenticatorFlow": false, + "requirement": "DISABLED", + "priority": 60, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + }, + { + "id": "1dace197-f541-4109-9c50-aa172ce6ac14", + "alias": "reset credentials", + "description": "Reset credentials for a user if they forgot their password or something", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "reset-credentials-choose-user", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "reset-credential-email", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 20, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticator": "reset-password", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 30, + "userSetupAllowed": false, + "autheticatorFlow": false + }, + { + "authenticatorFlow": true, + "requirement": "CONDITIONAL", + "priority": 40, + "flowAlias": "Reset - Conditional OTP", + "userSetupAllowed": false, + "autheticatorFlow": true + } + ] + }, + { + "id": "744c784a-2933-4ea7-9c98-b89b37cdfafc", + "alias": "saml ecp", + "description": "SAML ECP Profile Authentication Flow", + "providerId": "basic-flow", + "topLevel": true, + "builtIn": true, + "authenticationExecutions": [ + { + "authenticator": "http-basic-authenticator", + "authenticatorFlow": false, + "requirement": "REQUIRED", + "priority": 10, + "userSetupAllowed": false, + "autheticatorFlow": false + } + ] + } + ], + "authenticatorConfig": [ + { + "id": "0231eced-f393-479f-9d3e-0deb23879cd2", + "alias": "create unique user config", + "config": { + "require.password.update.after.registration": "false" + } + }, + { + "id": "24782868-8536-44aa-a808-c8af37085ce5", + "alias": "review profile config", + "config": { + "update.profile.on.first.login": "missing" + } + } + ], + "requiredActions": [ + { + "alias": "CONFIGURE_TOTP", + "name": "Configure OTP", + "providerId": "CONFIGURE_TOTP", + "enabled": true, + "defaultAction": false, + "priority": 10, + "config": {} + }, + { + "alias": "terms_and_conditions", + "name": "Terms and Conditions", + "providerId": "terms_and_conditions", + "enabled": false, + "defaultAction": false, + "priority": 20, + "config": {} + }, + { + "alias": "UPDATE_PASSWORD", + "name": "Update Password", + "providerId": "UPDATE_PASSWORD", + "enabled": true, + "defaultAction": false, + "priority": 30, + "config": {} + }, + { + "alias": "UPDATE_PROFILE", + "name": "Update Profile", + "providerId": "UPDATE_PROFILE", + "enabled": true, + "defaultAction": false, + "priority": 40, + "config": {} + }, + { + "alias": "VERIFY_EMAIL", + "name": "Verify Email", + "providerId": "VERIFY_EMAIL", + "enabled": true, + "defaultAction": false, + "priority": 50, + "config": {} + }, + { + "alias": "delete_account", + "name": "Delete Account", + "providerId": "delete_account", + "enabled": false, + "defaultAction": false, + "priority": 60, + "config": {} + }, + { + "alias": "update_user_locale", + "name": "Update User Locale", + "providerId": "update_user_locale", + "enabled": true, + "defaultAction": false, + "priority": 1000, + "config": {} + } + ], + "browserFlow": "browser", + "registrationFlow": "registration", + "directGrantFlow": "direct grant", + "resetCredentialsFlow": "reset credentials", + "clientAuthenticationFlow": "clients", + "dockerAuthenticationFlow": "docker auth", + "attributes": { + "cibaBackchannelTokenDeliveryMode": "poll", + "cibaExpiresIn": "120", + "cibaAuthRequestedUserHint": "login_hint", + "oauth2DeviceCodeLifespan": "600", + "oauth2DevicePollingInterval": "5", + "parRequestUriLifespan": "60", + "cibaInterval": "5" + }, + "keycloakVersion": "15.0.2", + "userManagedAccessAllowed": false, + "clientProfiles": { + "profiles": [] + }, + "clientPolicies": { + "policies": [] + }, + "users": [ + { + "username": "testuser", + "enabled": true, + "email": "testuser@thehyve.nl", + "credentials": [ + { + "type": "password", + "value": "P@ssword1" + } + ], + "realmRoles": [ + "offline_access" + ], + "groups": [ + "/PUBLIC_STUDIES" + ] + } + ], + "groups": [ + { + "name": "PUBLIC_STUDIES", + "clientRoles": { + "cbioportal": [ + "study_tcga_pub" + ] + } + } + ] +} \ No newline at end of file diff --git a/src/test/resources/security/signing-cert.pem b/src/test/resources/security/signing-cert.pem new file mode 100644 index 00000000000..01883dcafef --- /dev/null +++ b/src/test/resources/security/signing-cert.pem @@ -0,0 +1,31 @@ +-----BEGIN CERTIFICATE----- +MIIFazCCA1OgAwIBAgIUVMt2XXqYekaunKy/fhcJNQzJ0uQwDQYJKoZIhvcNAQEL +BQAwRTELMAkGA1UEBhMCQVUxEzARBgNVBAgMClNvbWUtU3RhdGUxITAfBgNVBAoM +GEludGVybmV0IFdpZGdpdHMgUHR5IEx0ZDAeFw0yMTExMTkxMzUyMzFaFw0yMjEx +MTkxMzUyMzFaMEUxCzAJBgNVBAYTAkFVMRMwEQYDVQQIDApTb21lLVN0YXRlMSEw +HwYDVQQKDBhJbnRlcm5ldCBXaWRnaXRzIFB0eSBMdGQwggIiMA0GCSqGSIb3DQEB +AQUAA4ICDwAwggIKAoICAQDJTDNHzHv19kM4tVLOIjpR/vez4QJk70PMbghQBdCp +1Er1yU8GkQRMx0QtumQB2ML1p2f63EEd7WsAPMEVYNQv6MHJDhAIDt+npWmYrGl3 +PrkVA3GNzZcD+GQEMZdGcECvfocOy2tB6iMOhdnFqu4L/QfFG2yJ+CpimpijvW78 +cJ35oYmOTnD7R9LBAJQuBlQDpOvB+I/dFeCiNKw61HQy0nMf6oe0pBy4E7bImQ0H +Y/soxBnzbvPUzbBvnhb2d97l3wn6ElUMrZuQSyI+OyVgBMyv9gcgV4Wq16oEuNkW +FIdY2j8GeiDlqy9KJAttgLXBjGua2lRML0a+nrfF1VbBLgyzAZZP2IS/P3QYcSE2 +GbPWiWXjov2vF63/VnARzQhPhuLGilWp1Nxqr0HztgSiAyx0D3wqEBic0ERAQDVu +HQZdjPd7RJaJ6MBnZH9mMVQOrjspIP5Sc6Z7omou26LPTjWNwmNWnfrq1sU8ADg4 +Uj09PWYcuWhPKxe6K9Zm4PLGXA0fR/fCVPDKaJPXIC7FGzDDdh/uSb9OURlgHwe3 +19FCdvm1k7xD6tEfsyORjWJFoYvyT015j9LdBuO5fwt40EPCzNezqWCaimES7u3P +uyg+4mbnRDh1UuouHOHVZ4jWySrrEktI0l6JkxrqdT2ilw7ICtmFx2fsjO9qso4t +GwIDAQABo1MwUTAdBgNVHQ4EFgQU0JL52xvzhG/48H01Rxac3MOgZYEwHwYDVR0j +BBgwFoAU0JL52xvzhG/48H01Rxac3MOgZYEwDwYDVR0TAQH/BAUwAwEB/zANBgkq +hkiG9w0BAQsFAAOCAgEAYYbj4v37eUTo9mtWgtZ2hHjWtdScPlZGxZanPZZpAcN8 +JR07ps/wow68rQMOZR9hFS6c2+izbn3HkR3OwCK9sZeuWzrLVPUBSiXxEbRkpK/p +XAd/Irat+f1ylA3j3J4VyDJymqiuIBOE9kzGWpbMdyqlHdH5XG/giLEOY66p6k5Q +rtKDXKzfQ7BBzO1WTe1BkWp7HerEKqM7mRSA4pRT5J7UAGn4gHOU39bnOHZPhko/ +rFagI2iO8T3fSBL+IWx76ROoG3DUnaZmDIuMxzeEZD7G8aPWOJCP0/mnBrAQhsEU +g0bcsRa6qzWFigY4oWjxOSc2aQMRSjxrVf59Geplyhh8AY0yI49uhJJc6SztwuiX +9fksCm1/Z9YZeeJr/oOkBduGpX6BQbPA7N2yKg5APdn8DVIHFALijwobz+94+d6u +v4+ihlQ8jBgbo1kwMZps+BAVOODgX3RpFKmqcyX9bjWaapw+XE1U8Rtt3mcgN9qc +hvcIqcnGZ1PfaY1ultvAzUa4TCECiYRXSOXT4iAXv+M1i2XisuThtw7dC9HMY1D/ +0oA/cRxwknLsuKRRGJWbUN/Ts4GMjLmvKejQOWfS+/wHS9kQdPKS3BKZYQgqli4O +G1xRErykL6SRWTKJA3+VNditbHFkJuL9dGZLu0Dmaww6K1SSnYai77uTTPdOHoc= +-----END CERTIFICATE----- diff --git a/src/test/resources/security/signing-key.pem b/src/test/resources/security/signing-key.pem new file mode 100644 index 00000000000..ee46d3f2156 --- /dev/null +++ b/src/test/resources/security/signing-key.pem @@ -0,0 +1,52 @@ +-----BEGIN PRIVATE KEY----- +MIIJQgIBADANBgkqhkiG9w0BAQEFAASCCSwwggkoAgEAAoICAQDJTDNHzHv19kM4 +tVLOIjpR/vez4QJk70PMbghQBdCp1Er1yU8GkQRMx0QtumQB2ML1p2f63EEd7WsA +PMEVYNQv6MHJDhAIDt+npWmYrGl3PrkVA3GNzZcD+GQEMZdGcECvfocOy2tB6iMO +hdnFqu4L/QfFG2yJ+CpimpijvW78cJ35oYmOTnD7R9LBAJQuBlQDpOvB+I/dFeCi +NKw61HQy0nMf6oe0pBy4E7bImQ0HY/soxBnzbvPUzbBvnhb2d97l3wn6ElUMrZuQ +SyI+OyVgBMyv9gcgV4Wq16oEuNkWFIdY2j8GeiDlqy9KJAttgLXBjGua2lRML0a+ +nrfF1VbBLgyzAZZP2IS/P3QYcSE2GbPWiWXjov2vF63/VnARzQhPhuLGilWp1Nxq +r0HztgSiAyx0D3wqEBic0ERAQDVuHQZdjPd7RJaJ6MBnZH9mMVQOrjspIP5Sc6Z7 +omou26LPTjWNwmNWnfrq1sU8ADg4Uj09PWYcuWhPKxe6K9Zm4PLGXA0fR/fCVPDK +aJPXIC7FGzDDdh/uSb9OURlgHwe319FCdvm1k7xD6tEfsyORjWJFoYvyT015j9Ld +BuO5fwt40EPCzNezqWCaimES7u3Puyg+4mbnRDh1UuouHOHVZ4jWySrrEktI0l6J +kxrqdT2ilw7ICtmFx2fsjO9qso4tGwIDAQABAoICAFT7iprBRYQtl2uVgYPtB1oe +nkyerfgW2zSvL2s5SUKpkYv6lRZcmsgfSDVV/2qYLJaxOkC6Q/NyjD3paEqyOmKP +jWBoQ3RjcyC/wLjn8Q6auGCat5H6Pcs7Tl5G4WqncWelrzcbwght5Kb481t0MlN1 +W5ZnYYdN8fb29YILM5P3p3oALKabjy9Gvz8kE2rq2QVA1xdo7LOVzOQuAJhFoVjj +aB8NUIV+03ETQZOmqc149EvdnmcbbG1m+RnmUCN1r/C0HO4qVyWnFYnxbl9/cOP8 +or2WzKNmz9O0gN7Fe0DLIejtGraNUN4lSy2t0fVE5Xb05WjWy8fuHZvUPhmTW7Ap +1WBGPpfjsbp+e5kx10rwWrWlKgcF7tNUUN9v0vJWKoF2Lr0+C5dphIz6LEZO7lTh +jh3oOXjN4jbtoZbd9tZ614dwUTPlllgQiHhNYeAK13REpX/Jx6Dgn6w5s2g+e7++ +4U93FMNkYjzArXAYhQd6CisFH32fr9Cc1WuUwhe6E7fABcynmMfpZhkwcCTPT+Qb +1CGsMvDUdETY1J4pL+Wlgwxidd0IKyOgIu6SpQ6JEeghJzl4XOnCWlJIlO8rts7o +y/0PaPWanl5rCUeeK5g32yv85bvUNJnkZ2YGBPM8c8wqsL91A+30WX1tE65JzqNI +3LGDLD/WGzCYMMR1Q0/hAoIBAQD/R6bpASFPhjgDJwqjrnEhd92I5q97f+fkGqbE +sVVaZQrkw2O74EyFjMWwNNG1VzYeOAAjbRkv0mXg6v6Djbuz5omkjF+qwyxXmgpY +e8aJ5sU34BWVoIJsXkdCkAC49q2KsoiYT+fFw3IjlpVcIvfkV7YnVeveJ47Z9+xj +rBSkKEIfZhBsd57wV+0LZ42Q/ULuPPnTlXQ77nqtBu6DusOjO1cYod5M4k0JlJwq +Nn39rwxCgIr5CI1UqsVJHsZz+lGQsu5ClC02V8HOTh8UjJtAcVslo+i6gLOHxB4z +vDRzAXnsFIrrukqp4Bz4djoE8np/mWDtSpanoBuF84/prpTvAoIBAQDJ3ZDIBZlm +TPhDUEbb6jG/AEsqeDUBgG5igLHxUg3StWgVL4cbNcRyeKD5VxMrO7pIfBm02GRq +CRpmxqeOadlBgTe52oG5MIrEVIHt1KT6E1LAP7jD0ABvf3P7e9wtXlDRAsIGLIDI +sb4toQFotUi6ayl07zB0+vJ1tWU+qB1ZJWWYRpDmCQG6/1vz3dBkjRPGzT79zXSx +bY2beNxKYIsL1LVR0BeLd4Tbn8mLL+fxjRep4qGO1fu+w62RqQvClSUIBgZJlpEc +uhRFbAL+zhqmuaq0MkcF65bHQCs/iddF9dUpNYSzUnR6N7fb9MkJZX9ww7tHLbef +u+lGVTD/8mKVAoIBAQCw4JOsxGSxNj1fKdD8YqTuXKA5+CTEvHYPHcxJYtnR/UrU +APH8vkgnDMf49FANhvTvcTvfT/twoCaI9ioNOspAt07NnZm3tu3lcM0UTAbfi+9A +bNpnx0Q3FAfp/d8SSZErFdMBPfRImchfEjpBEdWS+Jc0oBsC3YPkUR0QXq4ao+5U +1SIyFZwhybpr+X8kY+bZLZSoXtifofiMJM5kpaZiVn5dieJ+gRqBtd+SfBlGCeDD +v08LiDps3Lo/lLxKpbmYOfJOXV8KVTnq2UQ9t8LmnuRZqz1Y5E4AlwmaLSBmQzKY +Og+bj4OmOqu4GCrRPLVV7g8zu0exs4T+hilD7/wvAoIBAE3KMyvRdI7GpHkUK2o9 +spPfIhgooIyGmIMfAvNy4l7Lh2N6oD7tFlnigG31jy5+4sdiA2n8ZZ2zCliGvzUT +NySWDgpx2MGroh4MTtF+u2CfJ6lsJOBYfIJ7BA/qaCuXh98zh99nMO2mCRp+TBO0 +oGUuPJiSQAMkXWDc2TovALhEwATRVK9A00jjdOTiGpdVAkT+/QJDNW/WPtal2YZT +8+FIQ+NWJGybTzhvN/SKLoCYFYFjE0z+yvd1YqKaGS0P2mhgIfYjrqH6Vyt1dyYH ++J89Nzofkd0HL2BzKvdeP/X2yQELXarY4IfkhtadWwdi9JxY4QeJ55QHjtqKo8pN +9o0CggEAWg3kw1pLAsEtRO+5w+TLMAx8JXxhbIG2ITtGHU/eCd7YO2Ax+LHd8Ujj +JI59QXpmytfLd6czy8bvYaAW/LtbOPYwdWGVetWMjim5KceAz64koHcBsVK1Su4i +72MWagbEcwfAlZbwrIEcccZHW0/wTvwtZzllafCJhplN0+Et6vPLG00v7+x9krZO +T9zGAFbt79J/kNrwZ1BRNJIl+UPM1K18AKA4xFEmClqctejNSLLubPrwC0Vdokm8 +tYDRBI6r+M8w6wcHW9NXYQzQ27UZKAqrtyFXJ1coQQpwHCYJi7vztacjMOLEPuKv +KNSWUanv0GBYB9lnaY3wS/ncYpn8MQ== +-----END PRIVATE KEY----- diff --git a/src/test/resources/seed_mini.sql b/src/test/resources/seed_mini.sql new file mode 100644 index 00000000000..a4b224d9294 --- /dev/null +++ b/src/test/resources/seed_mini.sql @@ -0,0 +1,620 @@ +-- +-- Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center. +-- +-- This library is distributed in the hope that it will be useful,but WITHOUT +-- ANY WARRANTY,WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS +-- FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder +-- is on an "as is" basis,and Memorial Sloan-Kettering Cancer Center has no +-- obligations to provide maintenance,support,updates,enhancements or +-- modifications. In no event shall Memorial Sloan-Kettering Cancer Center be +-- liable to any party for direct,indirect,special,incidental or +-- consequential damages,including lost profits,arising out of the use of this +-- software and its documentation,even if Memorial Sloan-Kettering Cancer +-- Center has been advised of the possibility of such damage. +-- +-- This file is part of cBioPortal. +-- +-- cBioPortal is free software: you can redistribute it and/or modify +-- it under the terms of the GNU Affero General Public License as +-- published by the Free Software Foundation,either version 3 of the +-- License. +-- +-- This program is distributed in the hope that it will be useful, +-- but WITHOUT ANY WARRANTY; without even the implied warranty of +-- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +-- GNU Affero General Public License for more details. +-- +-- You should have received a copy of the GNU Affero General Public License +-- along with this program. If not,see . +-- ---------------------------------------------------------------------------- +-- A manually extracted subset of data for a small number of genes and samples from the BRCA +-- data set. This is intended to be used during unit testing,to validate the portal APIs. +-- In theory,it should be enough to run up a portal. +-- +-- Prepared by Stuart Watt -- 13th May 2015 + +SET SESSION sql_mode = 'ANSI_QUOTES'; + +DELETE FROM structural_variant; +DELETE FROM clinical_event_data; +DELETE FROM clinical_event; +DELETE FROM pdb_uniprot_residue_mapping; +DELETE FROM pdb_uniprot_alignment; +DELETE FROM cosmic_mutation; +DELETE FROM copy_number_seg_file; +DELETE FROM copy_number_seg; +DELETE FROM sample_cna_event; +DELETE FROM cna_event; +DELETE FROM drug_interaction; +DELETE FROM drug; +DELETE FROM pfam_graphics; +DELETE FROM text_cache; +DELETE FROM gistic_to_gene; +DELETE FROM gistic; +DELETE FROM sanger_cancer_census; +DELETE FROM protein_array_cancer_study; +DELETE FROM protein_array_data; +DELETE FROM protein_array_target; +DELETE FROM protein_array_info; +DELETE FROM mut_sig; +DELETE FROM interaction; +DELETE FROM clinical_attribute_meta; +DELETE FROM mutation; +DELETE FROM mutation_event; +DELETE FROM sample_profile; +DELETE FROM gene_panel; +DELETE FROM gene_panel_list; +DELETE FROM genetic_profile_samples; +DELETE FROM genetic_alteration; +DELETE FROM genetic_profile; +DELETE FROM uniprot_id_mapping; +DELETE FROM gene_alias; +DELETE FROM gene; +DELETE FROM clinical_sample; +DELETE FROM sample; +DELETE FROM sample_list_list; +DELETE FROM sample_list; +DELETE FROM clinical_patient; +DELETE FROM patient; +DELETE FROM authorities; +DELETE FROM users; +DELETE FROM cancer_study; +DELETE FROM type_of_cancer; +DELETE FROM genetic_entity; + +-- type_of_cancer +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('acc','Adrenocortical Carcinoma','Purple','ACC','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('acbc','Adenoid Cystic Breast Cancer','HotPink','ACBC','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('acyc','Adenoid Cystic Carcinoma','DarkRed','ACyC','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('aeca','Sweat Gland Carcinoma (Apocrine Eccrine Carcinoma)','Black','AECA','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('afx','Atypical Fibroxanthoma','Black','AFX','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('all','Pediatric Acute Lymphoid Leukemia','LightSalmon','ALL','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('aml','Acute Monocytic Leukemia','LightSalmon','AML-M5','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('blad','Bladder Urothelial Adenocarcinoma','Yellow','Bladder','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('blca','Bladder Urothelial Carcinoma','Yellow','Bladder','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('bpdcn','Blastic Plasmacytoid Dendritic Cell Neoplasm','LightSalmon','BPDCN','tissue'); +INSERT INTO "type_of_cancer" ("TYPE_OF_CANCER_ID","NAME","DEDICATED_COLOR","SHORT_NAME","PARENT") VALUES ('brca','Breast Invasive Carcinoma','HotPink','Breast','tissue'); + +-- reference_genome +INSERT INTO `reference_genome` VALUES (1,'human','hg19','GRCh37',2897310462,'http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips','2009-02-01'); +INSERT INTO `reference_genome` VALUES (2,'human','hg38','GRCh38',3049315783,'http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips','2013-12-01'); + +-- cancer_study +INSERT INTO "cancer_study" ("CANCER_STUDY_ID","CANCER_STUDY_IDENTIFIER","TYPE_OF_CANCER_ID","NAME","DESCRIPTION","PUBLIC","PMID","CITATION","GROUPS","REFERENCE_GENOME_ID") +VALUES (1,'study_tcga_pub','brca','Breast Invasive Carcinoma (TCGA,Nature 2012)','The Cancer Genome Atlas (TCGA) Breast Invasive Carcinoma project. 825 cases.
    Nature 2012. Raw data via the TCGA Data Portal.',1,'23000897,26451490','TCGA,Nature 2012,...','SU2C-PI3K;PUBLIC;GDAC',1); + +-- gene as genetic_entity +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,207,'AKT1','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,208,'AKT2','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,10000,'AKT3','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,369,'ARAF','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,472,'ATM','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,673,'BRAF','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,672,'BRCA1','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,675,'BRCA2','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,3265,'HRAS','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,3845,'KRAS','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,4893,'NRAS','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,51259,'TMEM216','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,282770,'OR10AG1','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,983,'CDK1','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,8085,'KMT2D','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +-- add genes for structural variant events +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,57670,'KIAA1549','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,27436,'EML4','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,238,'ALK','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,2115,'ETV1','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,7273,'TTN','protein-coding'); + +-- for test panels 1 and 2 +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,3983,'ABLIM1','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,80070,'ADAMTS20','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,253559,'CADM2','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,1838,'DTNB','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,2648,'KAT2A','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,4437,'MSH3','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,4602,'MYB','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,440348,'NPIPB15','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,56914,'OTOR','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,27334,'P2RY10','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,9780,'PIEZO1','protein-coding'); +INSERT INTO "genetic_entity" ("ENTITY_TYPE") VALUES ('GENE'); +SET @max_entity_id = (Select MAX(ID) from genetic_entity); +INSERT INTO "gene" ("GENETIC_ENTITY_ID","ENTREZ_GENE_ID","HUGO_GENE_SYMBOL","TYPE") VALUES (@max_entity_id,2261,'FGFR3','protein-coding'); + +-- cna_event +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (20093,207,-2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (20092,207,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (26161,208,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (2774,10000,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (16668,472,-2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (16669,472,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (11284,673,-2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (11283,673,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (23934,672,-2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (23933,672,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (18460,675,-2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (18459,675,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (15117,3265,-2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (15118,3265,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (17280,3845,2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (1678,4893,-2); +INSERT INTO "cna_event" ("CNA_EVENT_ID","ENTREZ_GENE_ID","ALTERATION") VALUES (1677,4893,2); + +-- cosmic_mutation +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('78883','17',41197784,'G','A','-','c.5503C>T',672,'R1835*',2,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('23923','17',41199686,'GC','G','-','c.5440delG',672,'A1814fs*20',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('24529','17',41201160,'A','AA','-','c.5383_5384insT',672,'S1796fs*34',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1577248','17',41201164,'C','A','-','c.5380G>T',672,'E1794*',2,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('35891','17',41209082,'G','GG','-','c.5263_5264insC',672,'Q1756fs*74',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('51256','17',41209095,'G','A','-','c.5251C>T',672,'R1751*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('24528','17',41215370,'C','A','-','c.5173G>T',672,'E1725*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('68967','17',41215913,'TC','T','-','c.5129delG',672,'G1710fs*4',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('95581','17',41223001,'C','A','-','c.4930G>T',672,'E1644*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('219051','17',41223106,'C','A','-','c.4825G>T',672,'E1609*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('78884','17',41226411,'G','A','-','c.4612C>T',672,'Q1538*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('187264','17',41226515,'G','T','-','c.4508C>A',672,'S1503*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('3983467','17',41228590,'G','A','-','c.4399C>T',672,'Q1467*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('979730','17',41234451,'G','A','-','c.4327C>T',672,'R1443*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('23959','17',41243685,'TC','T','-','c.3862delG',672,'E1288fs*19',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1302865','17',41243707,'G','A','-','c.3841C>T',672,'Q1281*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1577247','17',41243721,'A','T','-','c.3827T>A',672,'L1276*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('69203','17',41243753,'A','ATT','-','c.3794_3795insAA',672,'N1265fs*4',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1577246','17',41243781,'GTGTTC','G','-','c.3762_3766delGAACA',672,'K1254fs*11',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('112117','17',41243899,'A','ATAAGTTCT','-','c.3648_3649insAGAACTTA',672,'S1217fs*21',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1325059','17',41243984,'CCT','C','-','c.3562_3563delAG',672,'R1188fs*3',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('23931','17',41243998,'CTT','C','-','c.3548_3549delAA',672,'K1183fs*4',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1666857','17',41244021,'AC','A','-','c.3526_3526delG',672,'V1176fs*34',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('706227','17',41244070,'T','A','-','c.3478A>T',672,'K1160*',1,'BRCA1 truncating'); +INSERT INTO "cosmic_mutation" ("COSMIC_MUTATION_ID","CHR","START_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","STRAND","CODON_CHANGE","ENTREZ_GENE_ID","PROTEIN_CHANGE","COUNT","KEYWORD") VALUES ('1325058','17',41244082,'C','CATCTAACA','-','c.3465_3466insTGTTAGAT',672,'D1156fs*2',1,'BRCA1 truncating'); + +-- gene_alias +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (207,'AKT'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (207,'CWS6'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (208,'HIHGHH'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (208,'PKBB'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (10000,'MPPH'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (10000,'MPPH2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (369,'A-RAF'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (369,'ARAF1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (472,'AT1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (472,'ATA'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (673,'B-RAF1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (673,'BRAF1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (672,'BRCAI'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (672,'BRCC1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (675,'BRCC2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (675,'BROVCA2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (675,'FACD'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3265,'C-BAS/HAS'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3265,'C-H-RAS'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3845,'C-K-RAS'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3845,'KRAS1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3845,'KRAS2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4893,'N-ras'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4893,'NCMS'); + +-- for test panels 1 and 2 +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (56914,'FDP'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (56914,'MIAL1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'IGSF4D'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'Necl-3'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'NECL3'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'SynCAM 2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (253559,'synCAM2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4437,'MRP1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4437,'DUP'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4437,'FAP4'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (27334,'P2Y10'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (27334,'LYPSR2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (80070,'ADAM-TS20'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (80070,'GON-1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (80070,'ADAMTS-20'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'hGCN5'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'GCN5'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'GCN5L2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2648,'PCAF-b'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'c-myb_CDS'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'Cmyb'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'c-myb'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (4602,'efg'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (440348,'A-761H5.4'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (440348,'NPIPL2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'LIMAB1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'abLIM-1'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'ABLIM'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (3983,'LIMATIN'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'FAM38A'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'Mib'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'LMPH3'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (9780,'DHS'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'JTK4'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'HSFGFR3EX'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'ACH'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'CEK2'); +INSERT INTO "gene_alias" ("ENTREZ_GENE_ID","GENE_ALIAS") VALUES (2261,'CD333'); + +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(207,'14q32.33',10838,105235686,105262088,14,1); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(207,'14q32.33',11162,104769349,104795751,14,2); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(208,'19q13.2',15035,40736224,40791443,19,1); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(208,'19q13.2',15035,40230317,40285536,19,2); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(51259,'11q12.2',2364,61159159,61166335,11,1); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(51259,'11q12.2',2364,61391687,61398863,11,2); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(282770,'11q12.1',2814,55734975,55735990,11,1); +INSERT INTO reference_genome_gene (ENTREZ_GENE_ID,CYTOBAND,EXONIC_LENGTH,START,END,CHR,REFERENCE_GENOME_ID) VALUES(282770,'11q12.1',2814,55967558,55968463,11,2); + +INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (2,'study_tcga_pub_gistic',1,'COPY_NUMBER_ALTERATION','DISCRETE','Putative copy-number alterations from GISTIC','Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.','1'); +INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (3,'study_tcga_pub_mrna',1,'MRNA_EXPRESSION','Z-SCORE','mRNA expression (microarray)','Expression levels (Agilent microarray).','0'); +INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (4,'study_tcga_pub_log2CNA',1,'COPY_NUMBER_ALTERATION','LOG2-VALUE','Log2 copy-number values','Log2 copy-number values for each gene (from Affymetrix SNP6).','0'); +INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (5,'study_tcga_pub_methylation_hm27',1,'METHYLATION','CONTINUOUS','Methylation (HM27)','Methylation beta-values (HM27 platform). For genes with multiple methylation probes,the probe least correlated with expression is selected.','0'); +INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (6,'study_tcga_pub_mutations',1,'MUTATION_EXTENDED','MAF','Mutations','Mutation data from whole exome sequencing.','1'); +INSERT INTO "genetic_profile" ("GENETIC_PROFILE_ID","STABLE_ID","CANCER_STUDY_ID","GENETIC_ALTERATION_TYPE","DATATYPE","NAME","DESCRIPTION","SHOW_PROFILE_IN_ANALYSIS_TAB") VALUES (7,'study_tcga_pub_structural_variants',1,'STRUCTURAL_VARIANT','SV','Structural Variants','Structural Variants test data.','1'); + +-- genetic_alteration +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'0,0,1,2,0,1,1,1,0,1,1,1,0,1,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'0,0,0,0,0,0,0,0,-1,0,0,0,-1,0,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'0,0,0,1,0,0,0,1,0,0,0,2,0,2,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0,0,0,0,0,0,1,0,0,0,0,-1,0,0,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'0,0,0,1,0,0,-1,1,1,0,1,2,2,0,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'0,-1,-1,0,0,-1,0,1,0,-1,-1,1,-1,-1,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'0,-1,0,-1,0,0,0,0,-1,1,-1,0,0,0,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'0,0,0,0,0,1,0,-1,0,-1,-1,0,-1,0,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0,0,0,1,0,0,0,0,0,0,-1,0,0,0,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (2,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'0,-1,0,0,0,0,-1,0,1,0,-1,1,-1,-1,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'-0.473833333333333,1.51866666666667,0.148333333333333,-0.187666666666667,0.914,-0.664333333333333,-1.70783333333333,0.976,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'-1.102375,-0.24375,0.018625,-0.157,0.33075,1.008,0.68175,-0.664875,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'-1.22235714285714,-0.592571428571429,-0.176642857142857,-0.310428571428571,-1.19892857142857,-0.670142857142857,0.0779285714285714,-0.302642857142857,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0.068,-0.062,-0.167833333333333,0.511666666666667,2.02066666666667,0.389166666666667,-0.724666666666666,0.9485,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 369),'-1.12475,-0.30675,0.1805,-0.59775,0.16625,0.402,0.243,-0.996,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'-0.17075,0.4045,0.185333333333333,0.4285,1.67616666666667,0.238,0.469833333333333,2.15883333333333,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'-1.50341666666667,-1.92183333333333,-1.75541666666667,-1.57325,-1.02958333333333,-1.39791666666667,-1.51483333333333,-2.07091666666667,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'-1.91125,-2.0595,-1.22825,-1.319,-4.16675,-1.187875,0.280625,-0.13075,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'-1.66108333333333,-1.38791666666667,-1.92483333333333,-1.65625,-0.35825,-1.99566666666667,-0.136416666666667,-0.70975,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0.2305,0.56,-0.10225,-0.0855,-0.012,0.138,0.141,0.6095,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (3,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'-0.57075,-1.3405,-1.541,-0.40475,0.629,-1.2315,0.768,-0.033,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'0.017,0.032,0.872,0.704,0.009,0.485,0.848,0.685,-0.270,1.054,0.658,0.455,0.256,0.628,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'-0.005,-0.003,-0.022,0.072,-0.042,0.015,0.045,0.026,-0.441,-0.030,0.009,0.154,-0.348,0.011,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'0.045,-0.048,0.043,0.324,-0.064,0.036,0.147,0.404,0.112,0.012,0.043,1.418,0.069,1.670,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0.003,-0.043,0.009,0.009,-0.043,0.031,0.411,-0.048,0.049,-0.030,0.056,-0.695,-0.022,-0.001,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'-0.009,0.001,0.006,0.379,0.022,-0.010,-0.473,1.172,2.823,0.014,0.339,1.450,3.160,0.026,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'-0.006,-0.500,-0.462,-0.013,-0.003,-0.448,0.135,0.522,0.211,-0.578,-0.350,0.655,-0.449,-0.668,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'0.011,-0.420,0.014,-0.341,-0.019,0.020,0.032,-0.052,-0.453,0.455,-0.318,0.278,0.240,0.034,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'0.044,-0.082,0.027,-0.003,-0.012,0.486,-0.300,-0.397,-0.284,-0.547,-0.301,0.218,-0.389,-0.011,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0.015,0.005,0.005,0.344,-0.011,0.171,0.140,-0.013,0.021,0.010,-0.385,-0.177,0.075,0.002,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (4,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'-0.005,-0.502,-0.240,0.016,0.022,-0.029,-0.319,0.004,1.020,-0.024,-0.366,0.768,-0.397,-0.667,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 10000),'0.841525757,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 207),'0.134488708,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 208),'0.072712077,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3265),'0.039372,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 369),'0.125441004,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 3845),'0.049338479,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 472),'0.025402093,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 4893),'0.105977072,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 672),'0.066638638,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 673),'0.020369562,'); +INSERT INTO "genetic_alteration" ("GENETIC_PROFILE_ID","GENETIC_ENTITY_ID","VALUES") VALUES (5,(Select "GENETIC_ENTITY_ID" from "gene" where "ENTREZ_GENE_ID" = 675),'0.793930197,'); + +-- genetic_profile_samples +INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (2,'1,2,3,4,5,6,7,8,9,10,11,12,13,14,'); +INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (3,'2,3,6,8,9,10,12,13,'); +INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (4,'1,2,3,4,5,6,7,8,9,10,11,12,13,14,'); +INSERT INTO "genetic_profile_samples" ("GENETIC_PROFILE_ID","ORDERED_SAMPLE_LIST") VALUES (5,'2,'); + +-- patient +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (1,'TCGA-A1-A0SB',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (2,'TCGA-A1-A0SD',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (3,'TCGA-A1-A0SE',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (4,'TCGA-A1-A0SF',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (5,'TCGA-A1-A0SG',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (6,'TCGA-A1-A0SH',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (7,'TCGA-A1-A0SI',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (8,'TCGA-A1-A0SJ',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (9,'TCGA-A1-A0SK',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (10,'TCGA-A1-A0SM',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (11,'TCGA-A1-A0SN',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (12,'TCGA-A1-A0SO',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (13,'TCGA-A1-A0SP',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (14,'TCGA-A1-A0SQ',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (15,'TCGA-XX-0800',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (16,'TCGA-XX-0900',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (17,'TCGA-AA-3664',1); +INSERT INTO "patient" ("INTERNAL_ID","STABLE_ID","CANCER_STUDY_ID") VALUES (18,'TCGA-AA-3665',1); + +-- sample +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (1,'TCGA-A1-A0SB-01','Primary Solid Tumor',1); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (2,'TCGA-A1-A0SD-01','Primary Solid Tumor',2); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (3,'TCGA-A1-A0SE-01','Primary Solid Tumor',3); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (4,'TCGA-A1-A0SF-01','Primary Solid Tumor',4); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (5,'TCGA-A1-A0SG-01','Primary Solid Tumor',5); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (6,'TCGA-A1-A0SH-01','Primary Solid Tumor',6); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (7,'TCGA-A1-A0SI-01','Primary Solid Tumor',7); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (8,'TCGA-A1-A0SJ-01','Primary Solid Tumor',8); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (9,'TCGA-A1-A0SK-01','Primary Solid Tumor',9); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (10,'TCGA-A1-A0SM-01','Primary Solid Tumor',10); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (11,'TCGA-A1-A0SN-01','Primary Solid Tumor',11); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (12,'TCGA-A1-A0SO-01','Primary Solid Tumor',12); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (13,'TCGA-A1-A0SP-01','Primary Solid Tumor',13); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (14,'TCGA-A1-A0SQ-01','Primary Solid Tumor',14); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (15,'TCGA-XX-0800-01','Primary Solid Tumor',15); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (16,'TCGA-XX-0900-01','Primary Solid Tumor',16); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (17,'TCGA-AA-3664-01','Primary Solid Tumor',17); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (18,'TCGA-AA-3665-01','Primary Solid Tumor',18); +INSERT INTO "sample" ("INTERNAL_ID","STABLE_ID","SAMPLE_TYPE","PATIENT_ID") VALUES (19,'TCGA-A1-A0SB-02','Primary Solid Tumor',1); + +-- mutation_event +INSERT INTO "mutation_event" ("MUTATION_EVENT_ID","ENTREZ_GENE_ID","CHR","START_POSITION","END_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","PROTEIN_CHANGE","MUTATION_TYPE","FUNCTIONAL_IMPACT_SCORE","FIS_VALUE","LINK_XVAR","LINK_PDB","LINK_MSA","NCBI_BUILD","STRAND","VARIANT_TYPE","DB_SNP_RS","DB_SNP_VAL_STATUS","ONCOTATOR_DBSNP_RS","ONCOTATOR_REFSEQ_MRNA_ID","ONCOTATOR_CODON_CHANGE","ONCOTATOR_UNIPROT_ENTRY_NAME","ONCOTATOR_UNIPROT_ACCESSION","ONCOTATOR_PROTEIN_POS_START","ONCOTATOR_PROTEIN_POS_END","CANONICAL_TRANSCRIPT","KEYWORD") VALUES (2038,672,'17',41244748,41244748,'G','A','Q934*','Nonsense_Mutation','NA',0,'getma.org/?cm=var&var=hg19,17,41244748,G,A&fts=all','NA','NA','37','+','SNP','rs80357223','unknown','rs80357223','NM_007294','c.(2800-2802)CAG>TAG','BRCA1_HUMAN','P38398',934,934,1,'BRCA1 truncating'); +INSERT INTO "mutation_event" ("MUTATION_EVENT_ID","ENTREZ_GENE_ID","CHR","START_POSITION","END_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","PROTEIN_CHANGE","MUTATION_TYPE","FUNCTIONAL_IMPACT_SCORE","FIS_VALUE","LINK_XVAR","LINK_PDB","LINK_MSA","NCBI_BUILD","STRAND","VARIANT_TYPE","DB_SNP_RS","DB_SNP_VAL_STATUS","ONCOTATOR_DBSNP_RS","ONCOTATOR_REFSEQ_MRNA_ID","ONCOTATOR_CODON_CHANGE","ONCOTATOR_UNIPROT_ENTRY_NAME","ONCOTATOR_UNIPROT_ACCESSION","ONCOTATOR_PROTEIN_POS_START","ONCOTATOR_PROTEIN_POS_END","CANONICAL_TRANSCRIPT","KEYWORD") VALUES (22604,672,'17',41258504,41258504,'A','C','C61G','Missense_Mutation','H',4.355,'getma.org/?cm=var&var=hg19,17,41258504,A,C&fts=all','getma.org/pdb.php?prot=BRCA1_HUMAN&from=24&to=64&var=C61G','getma.org/?cm=msa&ty=f&p=BRCA1_HUMAN&rb=24&re=64&var=C61G','37','+','SNP','rs28897672','byCluster','rs28897672','NM_007294','c.(181-183)TGT>GGT','BRCA1_HUMAN','P38398',61,61,1,'BRCA1 C61 missense'); +INSERT INTO "mutation_event" ("MUTATION_EVENT_ID","ENTREZ_GENE_ID","CHR","START_POSITION","END_POSITION","REFERENCE_ALLELE","TUMOR_SEQ_ALLELE","PROTEIN_CHANGE","MUTATION_TYPE","FUNCTIONAL_IMPACT_SCORE","FIS_VALUE","LINK_XVAR","LINK_PDB","LINK_MSA","NCBI_BUILD","STRAND","VARIANT_TYPE","DB_SNP_RS","DB_SNP_VAL_STATUS","ONCOTATOR_DBSNP_RS","ONCOTATOR_REFSEQ_MRNA_ID","ONCOTATOR_CODON_CHANGE","ONCOTATOR_UNIPROT_ENTRY_NAME","ONCOTATOR_UNIPROT_ACCESSION","ONCOTATOR_PROTEIN_POS_START","ONCOTATOR_PROTEIN_POS_END","CANONICAL_TRANSCRIPT","KEYWORD") VALUES (2039,672,'17',41276033,41276033,'C','T','C27_splice','Splice_Site','NA',1.4013e-45,'NA','NA','NA','37','+','SNP','rs80358010','byCluster','rs80358010','NM_007294','c.e2+1','NA','NA',-1,-1,1,'BRCA1 truncating'); + +-- mutation +INSERT INTO "mutation" ("MUTATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","ENTREZ_GENE_ID","CENTER","SEQUENCER","MUTATION_STATUS","VALIDATION_STATUS","TUMOR_SEQ_ALLELE1","TUMOR_SEQ_ALLELE2","MATCHED_NORM_SAMPLE_BARCODE","MATCH_NORM_SEQ_ALLELE1","MATCH_NORM_SEQ_ALLELE2","TUMOR_VALIDATION_ALLELE1","TUMOR_VALIDATION_ALLELE2","MATCH_NORM_VALIDATION_ALLELE1","MATCH_NORM_VALIDATION_ALLELE2","VERIFICATION_STATUS","SEQUENCING_PHASE","SEQUENCE_SOURCE","VALIDATION_METHOD","SCORE","BAM_FILE","TUMOR_ALT_COUNT","TUMOR_REF_COUNT","NORMAL_ALT_COUNT","NORMAL_REF_COUNT") VALUES (2038,6,6,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','G','A','TCGA-A1-A0SH-10A-03D-A099-09','G','A','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1); +INSERT INTO "mutation" ("MUTATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","ENTREZ_GENE_ID","CENTER","SEQUENCER","MUTATION_STATUS","VALIDATION_STATUS","TUMOR_SEQ_ALLELE1","TUMOR_SEQ_ALLELE2","MATCHED_NORM_SAMPLE_BARCODE","MATCH_NORM_SEQ_ALLELE1","MATCH_NORM_SEQ_ALLELE2","TUMOR_VALIDATION_ALLELE1","TUMOR_VALIDATION_ALLELE2","MATCH_NORM_VALIDATION_ALLELE1","MATCH_NORM_VALIDATION_ALLELE2","VERIFICATION_STATUS","SEQUENCING_PHASE","SEQUENCE_SOURCE","VALIDATION_METHOD","SCORE","BAM_FILE","TUMOR_ALT_COUNT","TUMOR_REF_COUNT","NORMAL_ALT_COUNT","NORMAL_REF_COUNT") VALUES (22604,6,6,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','A','C','TCGA-A1-A0SH-10A-03D-A099-09','A','C','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1); +INSERT INTO "mutation" ("MUTATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","ENTREZ_GENE_ID","CENTER","SEQUENCER","MUTATION_STATUS","VALIDATION_STATUS","TUMOR_SEQ_ALLELE1","TUMOR_SEQ_ALLELE2","MATCHED_NORM_SAMPLE_BARCODE","MATCH_NORM_SEQ_ALLELE1","MATCH_NORM_SEQ_ALLELE2","TUMOR_VALIDATION_ALLELE1","TUMOR_VALIDATION_ALLELE2","MATCH_NORM_VALIDATION_ALLELE1","MATCH_NORM_VALIDATION_ALLELE2","VERIFICATION_STATUS","SEQUENCING_PHASE","SEQUENCE_SOURCE","VALIDATION_METHOD","SCORE","BAM_FILE","TUMOR_ALT_COUNT","TUMOR_REF_COUNT","NORMAL_ALT_COUNT","NORMAL_REF_COUNT") VALUES (2039,6,12,672,'genome.wustl.edu','IlluminaGAIIx','Germline','Unknown','T','T','TCGA-A1-A0SO-10A-03D-A099-09','T','T','NA','NA','NA','NA','Unknown','Phase_IV','Capture','NA','1','dbGAP',-1,-1,-1,-1); + +-- sample_list +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (1,'study_tcga_pub_all','other',1,'All Tumors','All tumor samples (14 samples)'); +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (2,'study_tcga_pub_acgh','other',1,'Tumors aCGH','All tumors with aCGH data (778 samples)'); +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (3,'study_tcga_pub_cnaseq','other',1,'Tumors with sequencing and aCGH data','All tumor samples that have CNA and sequencing data (482 samples)'); +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (4,'study_tcga_pub_complete','other',1,'Complete samples (mutations,copy-number,expression)','Samples with complete data (463 samples)'); +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (5,'study_tcga_pub_log2CNA','other',1,'Tumors log2 copy-number','All tumors with log2 copy-number data (778 samples)'); +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (6,'study_tcga_pub_methylation_hm27','other',1,'Tumors with methylation data','All samples with methylation (HM27) data (311 samples)'); +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (7,'study_tcga_pub_mrna','other',1,'Tumors with mRNA data (Agilent microarray)','All samples with mRNA expression data (526 samples)'); +INSERT INTO "sample_list" ("LIST_ID","STABLE_ID","CATEGORY","CANCER_STUDY_ID","NAME","DESCRIPTION") VALUES (8,'study_tcga_pub_sequenced','other',1,'Sequenced Tumors','All sequenced samples (507 samples)'); + +-- sample_list_list +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,1); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,3); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,4); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,5); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,6); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,7); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,8); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,9); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,10); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,11); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,12); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,13); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (1,14); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,1); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,3); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,4); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,5); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,6); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,7); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,8); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,9); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,10); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,11); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,12); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,13); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (2,14); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,3); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,6); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,8); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,9); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,10); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (3,12); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,3); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,6); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,8); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,9); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,10); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (4,12); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,1); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,3); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,4); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,5); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,6); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,7); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,8); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,9); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,10); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,11); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,12); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,13); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (5,14); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (6,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,3); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,6); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,8); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,9); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,10); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,12); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (7,13); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,2); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,3); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,6); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,8); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,9); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,10); +INSERT INTO "sample_list_list" ("LIST_ID","SAMPLE_ID") VALUES (8,12); + +-- sample_cna_event +INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (2774,4,2); +INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (17280,12,2); +INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (26161,12,2); +INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (17280,13,2); +INSERT INTO "sample_cna_event" ("CNA_EVENT_ID","SAMPLE_ID","GENETIC_PROFILE_ID") VALUES (26161,14,2); + +-- alteration_driver_annotation + -- from sample_cna_event +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (2774,2,4,'Putative_Driver','Pathogenic','Tier 1','Highly Actionable'); +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (17280,2,12,'Putative_Driver','Pathogenic','Tier 1','Highly Actionable'); +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (26161,2,12,'Putative_Passenger','Pathogenic','Tier 2','Potentially Actionable'); +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (17280,2,13,'Putative_Passenger','Pathogenic','Tier 1','Highly Actionable'); +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (26161,2,14,'Putative_Driver','Pathogenic','Tier 2','Potentially Actionable'); + -- from mutation +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (26161,6,6,'Putative_Driver','Pathogenic','Tier 1','Highly Actionable'); +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (22604,6,6,'Putative_Passenger','Pathogenic','Tier 2','Potentially Actionable'); +INSERT INTO "alteration_driver_annotation" ("ALTERATION_EVENT_ID","GENETIC_PROFILE_ID","SAMPLE_ID","DRIVER_FILTER","DRIVER_FILTER_ANNOTATION","DRIVER_TIERS_FILTER","DRIVER_TIERS_FILTER_ANNOTATION") VALUES (2039,6,12,'Putative_Passenger','Pathogenic','Tier 1','Highly Actionable'); + +-- sample_profile +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (1,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (1,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,5,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (2,6,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (3,6,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (4,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (4,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (5,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (5,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (6,6,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (7,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (7,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (8,6,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (9,6,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (10,6,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (11,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (11,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (12,6,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (13,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (13,3,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (13,4,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (14,2,NULL); +INSERT INTO "sample_profile" ("SAMPLE_ID","GENETIC_PROFILE_ID","PANEL_ID") VALUES (14,4,NULL); + +-- uniprot_id_mapping +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P31749','AKT1_HUMAN',207); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P31751','AKT2_HUMAN',208); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('Q9Y243','AKT3_HUMAN',10000); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P10398','ARAF_HUMAN',369); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('Q13315','ATM_HUMAN',472); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P15056','BRAF_HUMAN',673); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P38398','BRCA1_HUMAN',672); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P51587','BRCA2_HUMAN',675); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P01112','RASH_HUMAN',3265); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P01116','RASK_HUMAN',3845); +INSERT INTO "uniprot_id_mapping" ("UNIPROT_ACC","UNIPROT_ID","ENTREZ_GENE_ID") VALUES ('P01111','RASN_HUMAN',4893); + +-- pfam_graphics +INSERT INTO "pfam_graphics" ("UNIPROT_ACC","JSON_DATA") VALUES ('P31749','[{\"length\":\"480\",\"regions\":[{\"modelStart\":\"1\",\"modelEnd\":\"102\",\"colour\":\"#2dcf00\",\"endStyle\":\"jagged\",\"end\":108,\"display\":true,\"startStyle\":\"curved\",\"aliEnd\":\"106\",\"modelLength\":\"104\",\"text\":\"PH\",\"href\":\"/family/PF00169\",\"type\":\"pfama\",\"metadata\":{\"scoreName\":\"e-value\",\"score\":\"7.7e-10\",\"description\":\"PH domain\",\"end\":\"108\",\"accession\":\"PF00169\",\"database\":\"pfam\",\"aliEnd\":\"106\",\"identifier\":\"PH\",\"type\":\"Domain\",\"aliStart\":\"6\",\"start\":\"6\"},\"aliStart\":\"6\",\"start\":6},{\"modelStart\":\"2\",\"modelEnd\":\"260\",\"colour\":\"#ff5353\",\"endStyle\":\"curved\",\"end\":\"408\",\"display\":true,\"startStyle\":\"jagged\",\"aliEnd\":\"408\",\"modelLength\":\"260\",\"text\":\"Pkinase\",\"href\":\"/family/PF00069\",\"type\":\"pfama\",\"metadata\":{\"scoreName\":\"e-value\",\"score\":\"1.2e-71\",\"description\":\"Protein kinase domain\",\"end\":\"408\",\"accession\":\"PF00069\",\"database\":\"pfam\",\"aliEnd\":\"408\",\"identifier\":\"Pkinase\",\"type\":\"Domain\",\"aliStart\":\"151\",\"start\":\"150\"},\"aliStart\":\"151\",\"start\":\"150\"},{\"modelStart\":\"1\",\"modelEnd\":\"45\",\"colour\":\"#5b5bff\",\"endStyle\":\"straight\",\"end\":\"477\",\"display\":true,\"startStyle\":\"straight\",\"aliEnd\":\"475\",\"modelLength\":\"48\",\"text\":\"Pkinase_C\",\"href\":\"/family/PF00433\",\"type\":\"pfama\",\"metadata\":{\"scoreName\":\"e-value\",\"score\":\"0.00051\",\"description\":\"Protein kinase C terminal domain\",\"end\":\"477\",\"accession\":\"PF00433\",\"database\":\"pfam\",\"aliEnd\":\"475\",\"identifier\":\"Pkinase_C\",\"type\":\"Family\",\"aliStart\":\"428\",\"start\":\"428\"},\"aliStart\":\"428\",\"start\":\"428\"}],\"markups\":[{\"lineColour\":\"#ff0000\",\"colour\":\"#aaaaaa\",\"end\":77,\"display\":true,\"v_align\":\"top\",\"metadata\":{\"database\":\"UniProt\",\"type\":\"disulphide\",\"start\":\"60\",\"end\":\"77\"},\"type\":\"disulphide\",\"start\":60},{\"lineColour\":\"#ff0000\",\"colour\":\"#aaaaaa\",\"end\":\"310\",\"display\":true,\"v_align\":\"top\",\"metadata\":{\"database\":\"UniProt\",\"type\":\"disulphide\",\"start\":\"296\",\"end\":\"310\"},\"type\":\"disulphide\",\"start\":\"296\"}],\"metadata\":{\"database\":\"uniprot\",\"identifier\":\"AKT1_HUMAN\",\"description\":\"RAC-alpha serine/threonine-protein kinase EC=2.7.11.1\",\"organism\":\"Homo sapiens (Human)\",\"accession\":\"P31749\",\"taxid\":\"9606\"},\"motifs\":[{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"39\",\"end\":\"43\"},\"start\":39,\"end\":43,\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"47\",\"end\":\"50\"},\"start\":47,\"end\":50,\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"59\",\"end\":\"61\"},\"start\":59,\"end\":61,\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"101\",\"end\":\"106\"},\"start\":101,\"end\":106,\"display\":false},{\"colour\":\"#cccccc\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"114\",\"end\":\"138\"},\"start\":114,\"end\":\"138\",\"display\":true},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"390\",\"end\":\"391\"},\"start\":\"390\",\"end\":\"391\",\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"393\",\"end\":\"396\"},\"start\":\"393\",\"end\":\"396\",\"display\":false},{\"colour\":\"#cccccc\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"424\",\"end\":\"425\"},\"start\":\"424\",\"end\":\"425\",\"display\":true},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"448\",\"end\":\"464\"},\"start\":\"448\",\"end\":\"464\",\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"471\",\"end\":\"474\"},\"start\":\"471\",\"end\":\"474\",\"display\":false}]}]'); +INSERT INTO "pfam_graphics" ("UNIPROT_ACC","JSON_DATA") VALUES ('P31751','[{\"length\":\"481\",\"regions\":[{\"modelStart\":\"1\",\"modelEnd\":\"102\",\"colour\":\"#2dcf00\",\"endStyle\":\"jagged\",\"end\":108,\"display\":true,\"startStyle\":\"curved\",\"aliEnd\":\"106\",\"modelLength\":\"104\",\"text\":\"PH\",\"href\":\"/family/PF00169\",\"type\":\"pfama\",\"metadata\":{\"scoreName\":\"e-value\",\"score\":\"1.5e-10\",\"description\":\"PH domain\",\"end\":\"108\",\"accession\":\"PF00169\",\"database\":\"pfam\",\"aliEnd\":\"106\",\"identifier\":\"PH\",\"type\":\"Domain\",\"aliStart\":\"6\",\"start\":\"6\"},\"aliStart\":\"6\",\"start\":6},{\"modelStart\":\"3\",\"modelEnd\":\"260\",\"colour\":\"#ff5353\",\"endStyle\":\"curved\",\"end\":\"409\",\"display\":true,\"startStyle\":\"jagged\",\"aliEnd\":\"409\",\"modelLength\":\"260\",\"text\":\"Pkinase\",\"href\":\"/family/PF00069\",\"type\":\"pfama\",\"metadata\":{\"scoreName\":\"e-value\",\"score\":\"1.1e-71\",\"description\":\"Protein kinase domain\",\"end\":\"409\",\"accession\":\"PF00069\",\"database\":\"pfam\",\"aliEnd\":\"409\",\"identifier\":\"Pkinase\",\"type\":\"Domain\",\"aliStart\":\"154\",\"start\":\"152\"},\"aliStart\":\"154\",\"start\":\"152\"},{\"modelStart\":\"1\",\"modelEnd\":\"45\",\"colour\":\"#5b5bff\",\"endStyle\":\"straight\",\"end\":\"478\",\"display\":true,\"startStyle\":\"straight\",\"aliEnd\":\"476\",\"modelLength\":\"48\",\"text\":\"Pkinase_C\",\"href\":\"/family/PF00433\",\"type\":\"pfama\",\"metadata\":{\"scoreName\":\"e-value\",\"score\":\"0.0013\",\"description\":\"Protein kinase C terminal domain\",\"end\":\"478\",\"accession\":\"PF00433\",\"database\":\"pfam\",\"aliEnd\":\"476\",\"identifier\":\"Pkinase_C\",\"type\":\"Family\",\"aliStart\":\"429\",\"start\":\"429\"},\"aliStart\":\"429\",\"start\":\"429\"}],\"markups\":[{\"lineColour\":\"#ff0000\",\"colour\":\"#aaaaaa\",\"end\":77,\"display\":true,\"v_align\":\"top\",\"metadata\":{\"database\":\"UniProt\",\"type\":\"disulphide\",\"start\":\"60\",\"end\":\"77\"},\"type\":\"disulphide\",\"start\":60},{\"lineColour\":\"#ff0000\",\"colour\":\"#aaaaaa\",\"end\":\"311\",\"display\":true,\"v_align\":\"top\",\"metadata\":{\"database\":\"UniProt\",\"type\":\"disulphide\",\"start\":\"297\",\"end\":\"311\"},\"type\":\"disulphide\",\"start\":\"297\"}],\"metadata\":{\"database\":\"uniprot\",\"identifier\":\"AKT2_HUMAN\",\"description\":\"RAC-beta serine/threonine-protein kinase EC=2.7.11.1\",\"organism\":\"Homo sapiens 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(Human)\",\"accession\":\"Q9Y243\",\"taxid\":\"9606\"},\"motifs\":[{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"100\",\"end\":\"104\"},\"start\":100,\"end\":104,\"display\":false},{\"colour\":\"#cccccc\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"112\",\"end\":\"139\"},\"start\":116,\"end\":\"139\",\"display\":true},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"392\",\"end\":\"393\"},\"start\":\"392\",\"end\":\"393\",\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"438\",\"end\":\"439\"},\"start\":\"438\",\"end\":\"439\",\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"445\",\"end\":\"448\"},\"start\":\"445\",\"end\":\"448\",\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"450\",\"end\":\"461\"},\"start\":\"450\",\"end\":\"461\",\"display\":false},{\"colour\":\"#00ffff\",\"type\":\"disorder\",\"metadata\":{\"database\":\"IUPred\",\"type\":\"disorder\",\"start\":\"463\",\"end\":\"476\"},\"start\":\"463\",\"end\":\"476\",\"display\":false},{\"colour\":\"#32cd32\",\"type\":\"coiled_coil\",\"metadata\":{\"database\":\"ncoils\",\"type\":\"coiled_coil\",\"start\":\"95\",\"end\":\"115\"},\"start\":108,\"end\":115,\"display\":true}]}]'); + +-- users +INSERT INTO users (EMAIL,NAME,ENABLED) values ('jami@gmail.com','Jami Bax',1); +INSERT INTO users (EMAIL,NAME,ENABLED) values ('Lonnie@openid.org','Lonnie Penaloza',0); +INSERT INTO users (EMAIL,NAME,ENABLED) values ('Dhorak@yahoo.com','Darryl Horak',1); + +-- authorities +INSERT INTO authorities (EMAIL,AUTHORITY) values ('jami@gmail.com','ROLE_USER'); +INSERT INTO authorities (EMAIL,AUTHORITY) values ('Lonnie@openid.org','ROLE_USER'); +INSERT INTO authorities (EMAIL,AUTHORITY) values ('Dhorak@yahoo.com','ROLE_USER'); +INSERT INTO authorities (EMAIL,AUTHORITY) values ('Dhorak@yahoo.com','ROLE_MANAGER'); diff --git a/persistence/persistence-mybatis/src/test/resources/testContextDatabase.xml b/src/test/resources/testContextDatabase.xml similarity index 100% rename from persistence/persistence-mybatis/src/test/resources/testContextDatabase.xml rename to src/test/resources/testContextDatabase.xml diff --git a/persistence/persistence-mybatis/src/test/resources/testSql.sql b/src/test/resources/testSql.sql similarity index 100% rename from persistence/persistence-mybatis/src/test/resources/testSql.sql rename to src/test/resources/testSql.sql diff --git a/test/integration/docker-compose-localbuild.yml b/test/integration/docker-compose-localbuild.yml index cd3d8adc17e..539e928c6ad 100644 --- a/test/integration/docker-compose-localbuild.yml +++ b/test/integration/docker-compose-localbuild.yml @@ -5,13 +5,13 @@ version: '3' services: cbioportal: - command: /bin/sh -c "java -Xms2g -Xmx4g -Dauthenticate=noauthsessionservice -Dsession.service.url=http://cbioportal_session:5000/api/sessions/my_portal/ -jar webapp-runner.jar -AmaxHttpHeaderSize=16384 -AconnectionTimeout=20000 --enable-compression /app.war" + command: /bin/sh -c "java -Xms2g -Xmx4g -jar cbioportal/target/cbioportal-exec.jar --spring.config.location=cbioportal/application.properties --authenticate=false" volumes: - - $PORTAL_INFO_DIR:/portalinfo/ + #- $PORTAL_INFO_DIR:/portalinfo/ # make docker compose run the cbioportal version-under-test # by volume mounting the local portal source folder into the container # and running - $PORTAL_SOURCE_DIR:/cbioportal/ - - $PORTAL_SOURCE_DIR/portal/target/cbioportal.war:/app.war - # TODO: remove line below after upgrade of cbioportal-docker-compose to > v5.3.20 + - $PORTAL_SOURCE_DIR/src/main/resources/db-scripts:/cbioportal/db-scripts - $PORTAL_SOURCE_DIR/docker/web-and-data/docker-entrypoint.sh:/usr/local/bin/docker-entrypoint.sh + - $PORTAL_SOURCE_DIR/test/integration/integration_test_oncokb_import.sh:/cbioportal/integration_test_oncokb_import.sh diff --git a/test/integration/integration_test_oncokb_import.sh b/test/integration/integration_test_oncokb_import.sh index c49740ccc62..01bfe9b7f7a 100755 --- a/test/integration/integration_test_oncokb_import.sh +++ b/test/integration/integration_test_oncokb_import.sh @@ -2,14 +2,13 @@ # Test OncoKB import against local portal info dump (requires no Internet) and # live oncokb.org instance (requires Internet and OncoKB to be up-and-running) - -cd "$PORTAL_SOURCE_DIR"/core/src/main/scripts/importer -python3 ./metaImport.py \ - --study_directory="$PORTAL_SOURCE_DIR"/core/src/test/scripts/test_data/study_oncokb_import \ +cd /core/scripts/importer +python3 metaImport.py \ + --study_directory=/cbioportal/test/test_data/study_oncokb_import \ --url_server="https://www.cbioportal.org" \ --import_oncokb \ --skip_db_import && -cd "$PORTAL_SOURCE_DIR"/core/src/test/scripts/test_data/study_oncokb_import && +cd /cbioportal/test/test_data/study_oncokb_import && test -e data_cna_pd_annotations.txt && test -e ONCOKB_IMPORT_BACKUP_data_mutations_extended.maf && test -e ONCOKB_IMPORT_BACKUP_meta_cna_discrete.txt && diff --git a/test/integration/test_integration_test_oncokb_import.sh b/test/integration/test_integration_test_oncokb_import.sh new file mode 100755 index 00000000000..e50bd829e76 --- /dev/null +++ b/test/integration/test_integration_test_oncokb_import.sh @@ -0,0 +1,15 @@ +#!/bin/bash + +# exit when any of these fails +set -e +export DOCKER_IMAGE_CBIOPORTAL=cbioportal/cbioportal:demo-rfc72-squash + +run_in_service() { + service=$1 + shift + docker-compose -f docker-compose.yml -f $PORTAL_SOURCE_DIR/test/integration/docker-compose-localbuild.yml \ + run --rm \ + "$service" bash -c "$@" +} + +run_in_service cbioportal "cd /cbioportal && ./integration_test_oncokb_import.sh" \ No newline at end of file diff --git a/test/integration/test_load_study.sh b/test/integration/test_load_study.sh index d0d60663f3e..64dff5fd32c 100755 --- a/test/integration/test_load_study.sh +++ b/test/integration/test_load_study.sh @@ -2,6 +2,7 @@ # exit when any of these fails set -e +export DOCKER_IMAGE_CBIOPORTAL=cbioportal/cbioportal:demo-rfc72-squash run_in_service() { service=$1 @@ -13,23 +14,23 @@ run_in_service() { # load panels echo "Testing the loading of gene panels..." -run_in_service cbioportal "cd /cbioportal/core/src/main/scripts/ && perl importGenePanel.pl --data \ - /cbioportal/core/src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel1.txt" -run_in_service cbioportal "cd /cbioportal/core/src/main/scripts/ && perl importGenePanel.pl --data \ - /cbioportal/core/src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel2.txt" -run_in_service cbioportal "cd /cbioportal/core/src/main/scripts/ && echo yes | ./importGenesetData.pl --data /cbioportal/core/src/test/resources/genesets/study_es_0_genesets.gmt --new-version msigdb_7.5.1 --supp /cbioportal/core/src/test/resources/genesets/study_es_0_supp-genesets.txt" -run_in_service cbioportal "cd /cbioportal/core/src/main/scripts/ && ./importGenesetHierarchy.pl --data /cbioportal/core/src/test/resources/genesets/study_es_0_tree.yaml" +run_in_service cbioportal "cd /core/scripts/ && perl importGenePanel.pl --data \ + /cbioportal/test/test_data/study_es_0/data_gene_panel_testpanel1.txt" +run_in_service cbioportal "cd /core/scripts/ && perl importGenePanel.pl --data \ + /cbioportal/test/test_data/study_es_0/data_gene_panel_testpanel2.txt" +run_in_service cbioportal "cd /core/scripts/ && echo yes | ./importGenesetData.pl --data /cbioportal/test/test_data/genesets/study_es_0_genesets.gmt --new-version msigdb_7.5.1 --supp /cbioportal/test/test_data/genesets/study_es_0_supp-genesets.txt" +run_in_service cbioportal "cd /core/scripts/ && ./importGenesetHierarchy.pl --data /cbioportal/test/test_data/genesets/study_es_0_tree.yaml" # dump portal info echo "Testing the dump of local portal info directory..." -run_in_service cbioportal 'cd cbioportal/core/src/main/scripts/ && perl dumpPortalInfo.pl /portalinfo' +run_in_service cbioportal 'cd core/scripts/ && perl dumpPortalInfo.pl /cbioportal/portalinfo' # validate study_es_0 using local portal info directory echo "Testing validation based on local portalinfo..." -run_in_service cbioportal 'validateData.py -v -p /portalinfo -s /cbioportal/core/src/test/scripts/test_data/study_es_0/' +run_in_service cbioportal 'validateData.py -v -p /cbioportal/portalinfo -s /cbioportal/test/test_data/study_es_0/' # load study_es_0 using API validation echo "Testing loading of study with API validation..." -run_in_service cbioportal 'metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/core/src/test/scripts/test_data/study_es_0/' +run_in_service cbioportal 'metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/test/test_data/study_es_0/' exit 0 diff --git a/test/integration/test_update_oncokb.sh b/test/integration/test_update_oncokb.sh index b41de84ec6c..5fefb51a766 100755 --- a/test/integration/test_update_oncokb.sh +++ b/test/integration/test_update_oncokb.sh @@ -2,7 +2,7 @@ # exit when any of these fails set -e - +export DOCKER_IMAGE_CBIOPORTAL=cbioportal/cbioportal:demo-rfc72-squash run_in_service() { service=$1 shift @@ -13,10 +13,10 @@ run_in_service() { # load study_es_0 using API validation echo "Testing update of OncoKB annotations..." -run_in_service cbioportal 'metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/core/src/test/scripts/test_data/study_oncokb_update/' +run_in_service cbioportal 'metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/test/test_data/study_oncokb_update/' # execute updateOncokb script -run_in_service cbioportal 'python3 /cbioportal/core/src/main/scripts/importer/updateOncokbAnnotations.py -s study_es_0 -p /cbioportal/portal.properties' +run_in_service cbioportal 'python3 /core/scripts/importer/updateOncokbAnnotations.py -s study_es_0 -p /cbioportal/application.properties' # Check that mutation annotations have been updated # 2 annotations should be changed to "Putative_Driver" (depends on OncoKB version) diff --git a/core/src/test/resources/genesets/study_es_0_genesets.gmt b/test/test_data/genesets/study_es_0_genesets.gmt similarity index 100% rename from core/src/test/resources/genesets/study_es_0_genesets.gmt rename to test/test_data/genesets/study_es_0_genesets.gmt diff --git a/core/src/test/resources/genesets/study_es_0_supp-genesets.txt b/test/test_data/genesets/study_es_0_supp-genesets.txt similarity index 100% rename from core/src/test/resources/genesets/study_es_0_supp-genesets.txt rename to test/test_data/genesets/study_es_0_supp-genesets.txt diff --git a/core/src/test/resources/genesets/study_es_0_tree.yaml b/test/test_data/genesets/study_es_0_tree.yaml similarity index 100% rename from core/src/test/resources/genesets/study_es_0_tree.yaml rename to test/test_data/genesets/study_es_0_tree.yaml diff --git a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/case_lists/cases_cna.txt b/test/test_data/study_es_0/case_lists/cases_cna.txt similarity index 100% rename from core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/case_lists/cases_cna.txt rename to test/test_data/study_es_0/case_lists/cases_cna.txt diff --git a/core/src/test/scripts/test_data/study_es_0/case_lists/cases_cnaseq.txt b/test/test_data/study_es_0/case_lists/cases_cnaseq.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/case_lists/cases_cnaseq.txt rename to test/test_data/study_es_0/case_lists/cases_cnaseq.txt diff --git a/core/src/test/scripts/test_data/study_es_0/case_lists/cases_custom.txt b/test/test_data/study_es_0/case_lists/cases_custom.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/case_lists/cases_custom.txt rename to test/test_data/study_es_0/case_lists/cases_custom.txt diff --git a/core/src/test/scripts/test_data/study_es_0/case_lists/cases_sequenced.txt b/test/test_data/study_es_0/case_lists/cases_sequenced.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/case_lists/cases_sequenced.txt rename to test/test_data/study_es_0/case_lists/cases_sequenced.txt diff --git a/core/src/test/scripts/test_data/study_es_0/case_lists/cases_test.txt b/test/test_data/study_es_0/case_lists/cases_test.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/case_lists/cases_test.txt rename to test/test_data/study_es_0/case_lists/cases_test.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_cancer_type.txt b/test/test_data/study_es_0/data_cancer_type.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_cancer_type.txt rename to test/test_data/study_es_0/data_cancer_type.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_clinical_patients.txt b/test/test_data/study_es_0/data_clinical_patients.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_clinical_patients.txt rename to test/test_data/study_es_0/data_clinical_patients.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_clinical_samples.txt b/test/test_data/study_es_0/data_clinical_samples.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_clinical_samples.txt rename to test/test_data/study_es_0/data_clinical_samples.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_cna_discrete.txt b/test/test_data/study_es_0/data_cna_discrete.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_cna_discrete.txt rename to test/test_data/study_es_0/data_cna_discrete.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_cna_hg19.seg b/test/test_data/study_es_0/data_cna_hg19.seg similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_cna_hg19.seg rename to test/test_data/study_es_0/data_cna_hg19.seg diff --git a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/data_cna_log2.txt b/test/test_data/study_es_0/data_cna_log2.txt similarity index 100% rename from core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/data_cna_log2.txt rename to test/test_data/study_es_0/data_cna_log2.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_expression_median.txt b/test/test_data/study_es_0/data_expression_median.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_expression_median.txt rename to test/test_data/study_es_0/data_expression_median.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_expression_median_Zscores.txt b/test/test_data/study_es_0/data_expression_median_Zscores.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_expression_median_Zscores.txt rename to test/test_data/study_es_0/data_expression_median_Zscores.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_gene_panel_matrix.txt b/test/test_data/study_es_0/data_gene_panel_matrix.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_gene_panel_matrix.txt rename to test/test_data/study_es_0/data_gene_panel_matrix.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel1.txt b/test/test_data/study_es_0/data_gene_panel_testpanel1.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel1.txt rename to test/test_data/study_es_0/data_gene_panel_testpanel1.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel2.txt b/test/test_data/study_es_0/data_gene_panel_testpanel2.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_gene_panel_testpanel2.txt rename to test/test_data/study_es_0/data_gene_panel_testpanel2.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_generic_assay_patient_test.txt b/test/test_data/study_es_0/data_generic_assay_patient_test.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_generic_assay_patient_test.txt rename to test/test_data/study_es_0/data_generic_assay_patient_test.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_gistic_genes_amp.txt b/test/test_data/study_es_0/data_gistic_genes_amp.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_gistic_genes_amp.txt rename to test/test_data/study_es_0/data_gistic_genes_amp.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_gsva_pvalues.txt b/test/test_data/study_es_0/data_gsva_pvalues.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_gsva_pvalues.txt rename to test/test_data/study_es_0/data_gsva_pvalues.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_gsva_scores.txt b/test/test_data/study_es_0/data_gsva_scores.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_gsva_scores.txt rename to test/test_data/study_es_0/data_gsva_scores.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_methylation_hm27.txt b/test/test_data/study_es_0/data_methylation_hm27.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_methylation_hm27.txt rename to test/test_data/study_es_0/data_methylation_hm27.txt diff --git a/test/test_data/study_es_0/data_mutational_signature.txt b/test/test_data/study_es_0/data_mutational_signature.txt new file mode 100644 index 00000000000..04c4351cdc6 --- /dev/null +++ b/test/test_data/study_es_0/data_mutational_signature.txt @@ -0,0 +1,61 @@ +ENTITY_STABLE_ID name description confidenceStatement TCGA-A1-A0SB-01 TCGA-A1-A0SD-01 TCGA-A1-A0SE-01 TCGA-A1-A0SH-01 TCGA-A2-A04U-01 TCGA-B6-A0RS-01 TCGA-BH-A0HP-01 TCGA-BH-A18P-01 +mean_1 mean_1 mean_1 Signature 1, the aging signature, is detected in this case. 0.370266873 0.010373016 0.005419294 0.022753384 0.037687823 0.016708976 0.100042446 0.104214723 +mean_10 mean_10 mean_10 Signature 10, the POLE signature, is detected in this case. It is associated with functions to the exonucleus domain of the POLE gene and enormous mutational burden. Oftentimes MMR signatures 6, 14,16, 20,21 and 26 co-occur with the POLE signature. 0.002709404 0.009212318 0.002650657 0.005475484 0.074175715 0.033049207 0.027323826 0.008861145 +mean_11 mean_11 mean_11 Signature 11, the Temozolomide (TMZ) signature, is detected in this case. 0.006035782 0.010095773 0.011926486 0.010637541 0.012168938 0.006641113 0.025730547 0.020463421 +mean_12 mean_12 mean_12 Signature 12 is detected in this case. We are not confident that we are able to detect signature 9 in the IMPACT cohort. In the literature it is found in liver cancer. 0.026432791 0.012953054 0.002587003 0.02225923 0.031026708 0.01642898 0.022392184 0.013437576 +mean_13 mean_13 mean_13 Signature 13, the APOBEC signature, is detected in this case. This signature often coccurs with signature 2, the other APOBEC signature. 0.002533773 0.012080707 0.06750656 0.403672528 0.011124 0.007631916 0.018970187 0.006076126 +mean_14 mean_14 mean_14 Signature 14, the signature of simultaneous MMR and POLE dysfunction is detected in this case. This signature usually occurs in cases with the POLE signature (signature 10) and other MMR signatures (6, 15, 20, 21 26). 0.006562519 0.009705064 0.005008429 0.01169992 0.02000342 0.014500145 0.034613722 0.030906098 +mean_15 mean_15 mean_15 Signature 15, a MMR signature, is detected in this case. It is usually associated with high mutational burden. 0.011970661 0.013967505 0.003583145 0.066176992 0.024139531 0.012422269 0.035150854 0.024233274 +mean_16 mean_16 mean_16 Signature 16 is detected in this case. We are not confident that we are able to detect signature 16 in the IMPACT cohort. In the literature it is associated with Liver cancer and alcohol consumption. 0.018075581 0.016174795 0.004085478 0.044836595 0.021500178 0.033960161 0.017962899 0.018849434 +mean_17 mean_17 mean_17 Signature 17 is detected in this case. The aetiology of this signature is unknown. It is predominantly found in gastric cancers. 0.004132642 0.017328434 0.001582939 0.00748642 0.018217142 0.008715209 0.029658706 0.021823903 +mean_18 mean_18 mean_18 Signature 18 is detected in this case. This signature is associated with MUTYH dysfunction and neuroblastoma. 0.005101312 0.027691339 0.078176692 0.007035636 0.016781154 0.226542324 0.030862216 0.05876765 +mean_19 mean_19 mean_19 Signature 19 is detected in this case. We are not confident that we are able to detect signature 19 in the IMPACT cohort. 0.018196853 0.016768977 0.010922822 0.014000266 0.011772131 0.011231503 0.035316214 0.094947481 +mean_2 mean_2 mean_2 Signature 2, the APOBEC signature, is detected in this case. This signature often coccurs with signature 13, the other APOBEC signature. 0.002663685 0.009194336 0.003716748 0.067693367 0.019050891 0.008820839 0.024258107 0.005814542 +mean_20 mean_20 mean_20 Signature 20 is detected in this case. This signature is associated with MMR and usually occurs in cases with the POLE signature (signature 10) and other MMR signatures (6, 14, 15, 21, 26). 0.03066836 0.012905178 0.003569324 0.014119672 0.022474579 0.014813438 0.055457368 0.030155165 +mean_21 mean_21 mean_21 Signature 21 is detected in this case. This signature is associated with MMR and usually co-occurs with other MMR signatures (6, 14, 15, 21, 26). 0.010964959 0.011272353 0.002258851 0.051853446 0.281501917 0.01281546 0.044179589 0.008190074 +mean_22 mean_22 mean_22 Signature 22 is detected in this case. We are not confident that we are able to detect signature 22 in the IMPACT cohort. In the literature it is associated with exposure to Aristolochic Acid. 0.028491957 0.010217024 0.004586289 0.011222009 0.019770493 0.008535491 0.024637853 0.020913163 +mean_23 mean_23 mean_23 Signature 23 is detected in this case. We are not confident that we are able to detect signature 23 in the IMPACT cohort. 0.00396734 0.010046981 0.01277244 0.007964559 0.011004478 0.008391836 0.034836096 0.03286779 +mean_24 mean_24 mean_24 Signature 24 is detected in this case. We are not confident that we are able to detect signature 24 in the IMPACT cohort. In the literature it is associated with aflatoxin exposure. In our cohort we believe it is detected by accident in cases with the smoking signature (signature 4). 0.032792827 0.078245387 0.066150339 0.014742662 0.017324086 0.061761186 0.017605536 0.051708779 +mean_25 mean_25 mean_25 Signature 25 is detected in this case. We are not confident that we are able to detect signature 25 in the IMPACT cohort. 0.011646217 0.048154399 0.03076214 0.013605822 0.038587852 0.013944057 0.023546505 0.037501919 +mean_26 mean_26 mean_26 Signature 26 is detected in this case. This signature is associated with MMR and usually co-occurs with other MMR signatures (6, 14, 15, 20, 21). 0.015537112 0.013825612 0.002464907 0.028813826 0.070298683 0.01999462 0.030799083 0.009143951 +mean_27 mean_27 mean_27 Signature 27 is detected in this case. We are not confident that we are able to detect signature 27 in the IMPACT cohort. 0.003465676 0.012766477 0.004909123 0.00658944 0.010038977 0.008511252 0.023474418 0.009076485 +mean_28 mean_28 mean_28 Signature 28 is detected in this case. We are not confident that we are able to detect signature 28 in the IMPACT cohort. It often co-occurs with signature 28. 0.003755223 0.011667726 0.001739293 0.005067195 0.012723938 0.007772049 0.021565925 0.007837668 +mean_29 mean_29 mean_29 Signature 29, the mutational signature of chewing tobacco is detected in this case. 0.010813509 0.013306168 0.034629865 0.011708457 0.01498353 0.042949985 0.030807758 0.04361619 +mean_3 mean_3 mean_3 Signature 3, the signature of Homologous Recombination Repair deficiency is detected in this case. This signature is most commonly associated with BRCA mutations. 0.012076334 0.399378181 0.058149399 0.024712129 0.022463858 0.069775315 0.022253226 0.023919542 +mean_30 mean_30 mean_30 Signature 30 is detected in this case. We are not confident that we are able to detect signature 30 in the IMPACT cohort. 0.021187235 0.019180665 0.007104322 0.015637667 0.021432941 0.020436345 0.036460701 0.022300431 +mean_4 mean_4 mean_4 Signature 4, the smoking signature is detected in this case. 0.02998631 0.05161966 0.066550323 0.017921856 0.016096543 0.179497941 0.024659786 0.097992724 +mean_5 mean_5 mean_5 Signature 5 is detected in this case. We are not confident that we are able to detect signature 5 in the IMPACT cohort. It is a 'flat' signature--when it is detected it is more likely to be an artefact. In the literature it is associated with age. 0.065346508 0.065105663 0.005317173 0.039082099 0.025806853 0.071908149 0.028765511 0.030413987 +mean_6 mean_6 mean_6 Signature 6, a MMR signature, is detected in this case. It is usually associated with high mutational burden. This signature often co-occurs with other MMR signatures (14, 15, 20, 21 26). 0.215904676 0.009298163 0.004855268 0.020464262 0.030032579 0.01055262 0.094946543 0.100148333 +mean_7 mean_7 mean_7 Signature 7, the UV light signature, is detected in this case. 0.008428142 0.011008883 0.009634254 0.010727403 0.037470752 0.007375711 0.036357093 0.025096172 +mean_8 mean_8 mean_8 Signature 8 is detected in this case. We are not confident that we are able to detect signature 8 in the IMPACT cohort. It is a 'flat' signature--when it is detected it is more likely to be an artefact. In the literature it is associated with HRD defects. 0.009033066 0.04154581 0.483003282 0.014265047 0.029063134 0.028977736 0.026974185 0.031083861 +mean_9 mean_9 mean_9 Signature 9 is detected in this case. We are not confident that we are able to detect signature 9 in the IMPACT cohort. In the literature it is associated with POLH. 0.011252674 0.014910352 0.004377151 0.007775086 0.021277177 0.015334168 0.020390915 0.009638392 +confidence_1 confidence_1 confidence_1 NA 0.653 0.066 0.05 0.129 0.1415 0.079 0.234 0.274 +confidence_10 confidence_10 confidence_10 NA 0.0235 0.0645 0.022 0.0465 0.2595 0.1505 0.1 0.062 +confidence_11 confidence_11 confidence_11 NA 0.0465 0.067 0.115 0.0775 0.0745 0.0535 0.0995 0.098 +confidence_12 confidence_12 confidence_12 NA 0.1375 0.068 0.024 0.1275 0.1165 0.0945 0.09 0.074 +confidence_13 confidence_13 confidence_13 NA 0.0185 0.0685 0.5655 0.936 0.0665 0.052 0.083 0.0515 +confidence_14 confidence_14 confidence_14 NA 0.054 0.067 0.0405 0.0785 0.0845 0.0755 0.119 0.1415 +confidence_15 confidence_15 confidence_15 NA 0.0745 0.0745 0.034 0.284 0.092 0.0745 0.1185 0.1215 +confidence_16 confidence_16 confidence_16 NA 0.1025 0.0795 0.031 0.196 0.1 0.139 0.0815 0.0895 +confidence_17 confidence_17 confidence_17 NA 0.036 0.0825 0.011 0.0605 0.094 0.0555 0.11 0.1105 +confidence_18 confidence_18 confidence_18 NA 0.0445 0.1105 0.297 0.0615 0.069 0.434 0.1055 0.1965 +confidence_19 confidence_19 confidence_19 NA 0.0955 0.073 0.0885 0.086 0.0725 0.065 0.114 0.2685 +confidence_2 confidence_2 confidence_2 NA 0.0235 0.0525 0.0325 0.293 0.0945 0.057 0.1015 0.0415 +confidence_20 confidence_20 confidence_20 NA 0.14 0.0745 0.0305 0.0835 0.101 0.0725 0.1505 0.1325 +confidence_21 confidence_21 confidence_21 NA 0.0725 0.072 0.0215 0.24 0.5255 0.09 0.131 0.0635 +confidence_22 confidence_22 confidence_22 NA 0.2335 0.0685 0.0415 0.09 0.0865 0.063 0.103 0.126 +confidence_23 confidence_23 confidence_23 NA 0.0365 0.0605 0.12 0.0635 0.064 0.0615 0.112 0.1525 +confidence_24 confidence_24 confidence_24 NA 0.1975 0.1925 0.297 0.0905 0.081 0.215 0.08 0.195 +confidence_25 confidence_25 confidence_25 NA 0.0695 0.134 0.132 0.083 0.123 0.079 0.094 0.1365 +confidence_26 confidence_26 confidence_26 NA 0.0955 0.073 0.023 0.1475 0.183 0.0995 0.109 0.067 +confidence_27 confidence_27 confidence_27 NA 0.0305 0.0795 0.05 0.053 0.0675 0.0605 0.0955 0.064 +confidence_28 confidence_28 confidence_28 NA 0.0325 0.077 0.0135 0.044 0.0785 0.0555 0.1 0.0605 +confidence_29 confidence_29 confidence_29 NA 0.0835 0.0725 0.172 0.074 0.08 0.138 0.111 0.164 +confidence_3 confidence_3 confidence_3 NA 0.083 0.629 0.1835 0.12 0.101 0.21 0.0845 0.1215 +confidence_30 confidence_30 confidence_30 NA 0.123 0.096 0.0625 0.091 0.0995 0.107 0.1145 0.107 +confidence_4 confidence_4 confidence_4 NA 0.1685 0.1485 0.2155 0.1005 0.08 0.382 0.0995 0.2815 +confidence_5 confidence_5 confidence_5 NA 0.218 0.1645 0.0445 0.1665 0.1045 0.187 0.114 0.1155 +confidence_6 confidence_6 confidence_6 NA 0.4325 0.062 0.043 0.1275 0.113 0.069 0.2225 0.2885 +confidence_7 confidence_7 confidence_7 NA 0.0705 0.075 0.0975 0.0765 0.137 0.0545 0.1105 0.1225 +confidence_8 confidence_8 confidence_8 NA 0.07 0.132 0.859 0.0935 0.106 0.123 0.106 0.131 +confidence_9 confidence_9 confidence_9 NA 0.081 0.0775 0.033 0.0615 0.0845 0.082 0.09 0.064 \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_0/data_mutations_extended.maf b/test/test_data/study_es_0/data_mutations_extended.maf similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_mutations_extended.maf rename to test/test_data/study_es_0/data_mutations_extended.maf diff --git a/core/src/test/scripts/test_data/study_es_0/data_resource_definition.txt b/test/test_data/study_es_0/data_resource_definition.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_resource_definition.txt rename to test/test_data/study_es_0/data_resource_definition.txt diff --git a/core/src/test/scripts/test_data/study_es_0/data_resource_patient.txt b/test/test_data/study_es_0/data_resource_patient.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/data_resource_patient.txt rename to test/test_data/study_es_0/data_resource_patient.txt 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    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 1 lines. Lines with warning: 0. Lines with error: 0–
    +
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    +
    + +
    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 846 lines. Lines with warning: 0. Lines with error: 0–
    +
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    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 850 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info154, 155, 844…6Values contained in the column cbp_driver_tiers that will appear in the "Mutation Color" menu of the OncoprintClass 2, Class 1 + See all 4 values + +
    Info––Validation of file complete–
    Info––Read 6305 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 10 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 8 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 7 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 6 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info1–This column can be replaced by a 'gene_panel' property in the respective meta filegistic
    Info––Validation of file complete–
    Info––Read 21 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 3 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 12 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 8 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 8 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 9 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 61 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info4, 5, 6…164Values contained in the column cbp_driver_tiers that will appear in the "Mutation Color" menu of the OncoprintClass 2, Class 1, Class 4… + See all 11 values + +
    Info7, 9–Line will not be loaded due to the variant classification filter. Filtered types: [Silent, Intron, 3'UTR, 3'Flank, 5'UTR, 5'Flank, IGR, RNA]Silent
    Info––Validation of file complete–
    Info––Read 38 lines. Lines with warning: 0. Lines with error: 0–
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 4 lines. Lines with warning: 0. Lines with error: 0–
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 4 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 4 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 2 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info48–No Entrez gene id or gene symbol provided for site 2. Assuming either the intragenic, deletion, duplication, translocation or inversion variant–
    Info49–No Entrez gene id or gene symbol provided for site 1. Assuming either the intragenic, deletion, duplication, translocation or inversion variant–
    Info––Validation of file complete–
    Info––Read 49 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 11 lines. Lines with warning: 0. Lines with error: 0–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of file–
    Info––Validation of file complete–
    Info––Read 11 lines. Lines with warning: 0. Lines with error: 0–
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    Info––Setting reference genome to human (GRCh37, hg19)–
    +
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    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of meta file–
    Info––Validation of meta file complete–
    +
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    Line NumberColumn NumberMessageValue Encountered
    Debug––Starting validation of study tags file–
    Info––Validation of study tags file complete.–
    +
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    + + +
    +
    +
    +
    +
    +

    Legend

    +
    +
    +

    + Click on a filename below to see a table of messages about the data + in the file. The colors in the tables have the following meanings: +

    + + + + + + + + + + + + + + + + + + + +
    ErrorError: cBioPortal will not know how to load this, please revise or remove
    WarningWarning: possible cause of confusion, please check whether this is intended
    InfoInfo: this looks good, no action required
    DebugVerbose output: details on the progress of the validation script
    +
    +
    +
    + + \ No newline at end of file diff --git a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/study_tags.yml b/test/test_data/study_es_0/study_tags.yml similarity index 100% rename from core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/study_tags.yml rename to test/test_data/study_es_0/study_tags.yml diff --git a/core/src/test/scripts/test_data/study_oncokb_import/case_lists/cases_cna.txt b/test/test_data/study_oncokb_import/case_lists/cases_cna.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/case_lists/cases_cna.txt rename to test/test_data/study_oncokb_import/case_lists/cases_cna.txt diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_cnaseq.txt b/test/test_data/study_oncokb_import/case_lists/cases_cnaseq.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/case_lists/cases_cnaseq.txt rename to test/test_data/study_oncokb_import/case_lists/cases_cnaseq.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_import/case_lists/cases_sequenced.txt b/test/test_data/study_oncokb_import/case_lists/cases_sequenced.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/case_lists/cases_sequenced.txt rename to test/test_data/study_oncokb_import/case_lists/cases_sequenced.txt diff --git a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/data_clinical_patients.txt b/test/test_data/study_oncokb_import/data_clinical_patients.txt similarity index 100% rename from core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/data_clinical_patients.txt rename to test/test_data/study_oncokb_import/data_clinical_patients.txt diff --git a/core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/data_clinical_samples.txt b/test/test_data/study_oncokb_import/data_clinical_samples.txt similarity index 100% rename from core/src/test/scripts/test_data/meta_study/invalid_show_profile_setting_cna/data_clinical_samples.txt rename to test/test_data/study_oncokb_import/data_clinical_samples.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_import/data_cna_discrete.txt b/test/test_data/study_oncokb_import/data_cna_discrete.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/data_cna_discrete.txt rename to test/test_data/study_oncokb_import/data_cna_discrete.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_import/data_mutations_extended.maf b/test/test_data/study_oncokb_import/data_mutations_extended.maf similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/data_mutations_extended.maf rename to test/test_data/study_oncokb_import/data_mutations_extended.maf diff --git a/core/src/test/scripts/test_data/study_es_0/meta_clinical_patients.txt b/test/test_data/study_oncokb_import/meta_clinical_patients.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/meta_clinical_patients.txt rename to test/test_data/study_oncokb_import/meta_clinical_patients.txt diff --git a/core/src/test/scripts/test_data/study_es_0/meta_clinical_samples.txt b/test/test_data/study_oncokb_import/meta_clinical_samples.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0/meta_clinical_samples.txt rename to test/test_data/study_oncokb_import/meta_clinical_samples.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_import/meta_cna_discrete.txt b/test/test_data/study_oncokb_import/meta_cna_discrete.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/meta_cna_discrete.txt rename to test/test_data/study_oncokb_import/meta_cna_discrete.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_import/meta_mutations_extended.txt b/test/test_data/study_oncokb_import/meta_mutations_extended.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/meta_mutations_extended.txt rename to test/test_data/study_oncokb_import/meta_mutations_extended.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_import/meta_study.txt b/test/test_data/study_oncokb_import/meta_study.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/meta_study.txt rename to test/test_data/study_oncokb_import/meta_study.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/case_lists/cases_cna.txt b/test/test_data/study_oncokb_update/case_lists/cases_cna.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/case_lists/cases_cna.txt rename to test/test_data/study_oncokb_update/case_lists/cases_cna.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/case_lists/cases_cnaseq.txt b/test/test_data/study_oncokb_update/case_lists/cases_cnaseq.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/case_lists/cases_cnaseq.txt rename to test/test_data/study_oncokb_update/case_lists/cases_cnaseq.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/case_lists/cases_sequenced.txt b/test/test_data/study_oncokb_update/case_lists/cases_sequenced.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/case_lists/cases_sequenced.txt rename to test/test_data/study_oncokb_update/case_lists/cases_sequenced.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/data_clinical_patients.txt b/test/test_data/study_oncokb_update/data_clinical_patients.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/data_clinical_patients.txt rename to test/test_data/study_oncokb_update/data_clinical_patients.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/data_clinical_samples.txt b/test/test_data/study_oncokb_update/data_clinical_samples.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/data_clinical_samples.txt rename to test/test_data/study_oncokb_update/data_clinical_samples.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/data_cna_discrete.txt b/test/test_data/study_oncokb_update/data_cna_discrete.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/data_cna_discrete.txt rename to test/test_data/study_oncokb_update/data_cna_discrete.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/data_cna_pd_annotations.txt b/test/test_data/study_oncokb_update/data_cna_pd_annotations.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/data_cna_pd_annotations.txt rename to test/test_data/study_oncokb_update/data_cna_pd_annotations.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/data_mutations_extended.maf b/test/test_data/study_oncokb_update/data_mutations_extended.maf similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/data_mutations_extended.maf rename to test/test_data/study_oncokb_update/data_mutations_extended.maf diff --git a/core/src/test/scripts/test_data/study_oncokb_import/meta_clinical_patients.txt b/test/test_data/study_oncokb_update/meta_clinical_patients.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_import/meta_clinical_patients.txt rename to test/test_data/study_oncokb_update/meta_clinical_patients.txt diff --git a/core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_clinical_samples.txt b/test/test_data/study_oncokb_update/meta_clinical_samples.txt similarity index 100% rename from core/src/test/scripts/test_data/study_es_0_legacy_cna_discrete/meta_clinical_samples.txt rename to test/test_data/study_oncokb_update/meta_clinical_samples.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/meta_cna_discrete.txt b/test/test_data/study_oncokb_update/meta_cna_discrete.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/meta_cna_discrete.txt rename to test/test_data/study_oncokb_update/meta_cna_discrete.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/meta_mutations_extended.txt b/test/test_data/study_oncokb_update/meta_mutations_extended.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/meta_mutations_extended.txt rename to test/test_data/study_oncokb_update/meta_mutations_extended.txt diff --git a/core/src/test/scripts/test_data/study_oncokb_update/meta_study.txt b/test/test_data/study_oncokb_update/meta_study.txt similarity index 100% rename from core/src/test/scripts/test_data/study_oncokb_update/meta_study.txt rename to test/test_data/study_oncokb_update/meta_study.txt diff --git a/test/test_db_version.sh b/test/test_db_version.sh old mode 100644 new mode 100755 index 1a723d7d92d..e370ed930ca --- a/test/test_db_version.sh +++ b/test/test_db_version.sh @@ -14,11 +14,11 @@ echo "Making sure all db versions are the same in cgds.sql, pom.xml and migratio POM_DB_VERSION=$(grep db.version ${DIR}/../pom.xml | cut -d'>' -f2 | cut -d'<' -f1) echo pom.xml db version is $POM_DB_VERSION -CGDS_DB_SQL_VERSION=$(grep 'INSERT INTO info' ${DIR}/../db-scripts/src/main/resources/cgds.sql | cut -d"'" -f2 | cut -d"'" -f1) -echo db-scripts/src/main/resources/cgds.sql db version is $CGDS_DB_SQL_VERSION +CGDS_DB_SQL_VERSION=$(grep 'INSERT INTO info' ${DIR}/../src/main/resources/db-scripts/cgds.sql | cut -d"'" -f2 | cut -d"'" -f1) +echo src/main/resources/db-scripts/cgds.sql db version is $CGDS_DB_SQL_VERSION -MIGRATION_DB_VERSION=$(grep 'UPDATE `info`' ${DIR}/../db-scripts/src/main/resources/migration.sql | tail -1 | cut -d '"' -f2 | cut -d'"' -f1) -echo db-scripts/src/main/resources/migration.sql db version is $MIGRATION_DB_VERSION +MIGRATION_DB_VERSION=$(grep 'UPDATE `info`' ${DIR}/../src/main/resources/db-scripts/migration.sql | tail -1 | cut -d '"' -f2 | cut -d'"' -f1) +echo src/main/resources/db-scripts/migration.sql db version is $MIGRATION_DB_VERSION if [ "$POM_DB_VERSION" == "$CGDS_DB_SQL_VERSION" ] && [ "$CGDS_DB_SQL_VERSION" == "$MIGRATION_DB_VERSION" ] then diff --git a/utils/pom.xml b/utils/pom.xml deleted file mode 100644 index 1edebdd38e5..00000000000 --- a/utils/pom.xml +++ /dev/null @@ -1,33 +0,0 @@ - - - - master - org.mskcc.cbio - 0-unknown-version-SNAPSHOT - - 4.0.0 - utils - Portal utils - Utility classes used in different modules - - - org.springframework - spring-core - - - org.springframework - spring-context - - - org.mockito - mockito-core - - - junit - junit - - - - \ No newline at end of file diff --git a/utils/src/main/java/org/cbioportal/utils/config/OnExpressionCondition.java b/utils/src/main/java/org/cbioportal/utils/config/OnExpressionCondition.java deleted file mode 100644 index f377b7afb31..00000000000 --- a/utils/src/main/java/org/cbioportal/utils/config/OnExpressionCondition.java +++ /dev/null @@ -1,48 +0,0 @@ -package org.cbioportal.utils.config; - -import org.cbioportal.utils.config.annotation.ConditionalOnExpression; -import org.springframework.beans.factory.config.BeanExpressionContext; -import org.springframework.beans.factory.config.BeanExpressionResolver; -import org.springframework.beans.factory.config.ConfigurableListableBeanFactory; -import org.springframework.context.annotation.Condition; -import org.springframework.context.annotation.ConditionContext; -import org.springframework.context.expression.StandardBeanExpressionResolver; -import org.springframework.core.type.AnnotatedTypeMetadata; - -// Adapted from Spring Boot -public class OnExpressionCondition implements Condition { - - public OnExpressionCondition() { - super(); - } - - @Override - public boolean matches(ConditionContext context, AnnotatedTypeMetadata metadata) { - String expression = (String) metadata.getAnnotationAttributes(ConditionalOnExpression.class.getName()).get("value"); - expression = wrapIfNecessary(expression); - expression = context.getEnvironment().resolvePlaceholders(expression); - ConfigurableListableBeanFactory beanFactory = context.getBeanFactory(); - if (beanFactory != null) { - return evaluateExpression(beanFactory, expression); - } - return false; - } - - private Boolean evaluateExpression(ConfigurableListableBeanFactory beanFactory, String expression) { - BeanExpressionResolver resolver = beanFactory.getBeanExpressionResolver(); - if (resolver == null) { - resolver = new StandardBeanExpressionResolver(); - } - BeanExpressionContext expressionContext = new BeanExpressionContext(beanFactory, null); - Object result = resolver.evaluate(expression, expressionContext); - return (result != null && (boolean) result); - } - - private String wrapIfNecessary(String expression) { - if (!expression.startsWith("#{")) { - return "#{" + expression + "}"; - } - return expression; - } - -} diff --git a/utils/src/main/java/org/cbioportal/utils/config/annotation/ConditionalOnExpression.java b/utils/src/main/java/org/cbioportal/utils/config/annotation/ConditionalOnExpression.java deleted file mode 100644 index 310fd8a5310..00000000000 --- a/utils/src/main/java/org/cbioportal/utils/config/annotation/ConditionalOnExpression.java +++ /dev/null @@ -1,18 +0,0 @@ -package org.cbioportal.utils.config.annotation; - -import org.cbioportal.utils.config.OnExpressionCondition; -import org.springframework.context.annotation.Conditional; - -import java.lang.annotation.ElementType; -import java.lang.annotation.Retention; -import java.lang.annotation.RetentionPolicy; -import java.lang.annotation.Target; - -@Target({ElementType.TYPE, ElementType.METHOD}) -@Retention(RetentionPolicy.RUNTIME) -@Conditional(value = OnExpressionCondition.class) -public @interface ConditionalOnExpression { - - String value() default "true"; - -} diff --git a/utils/src/main/java/org/cbioportal/utils/security/PortalSecurityConfig.java b/utils/src/main/java/org/cbioportal/utils/security/PortalSecurityConfig.java deleted file mode 100644 index 9369bd10787..00000000000 --- a/utils/src/main/java/org/cbioportal/utils/security/PortalSecurityConfig.java +++ /dev/null @@ -1,14 +0,0 @@ -package org.cbioportal.utils.security; - -public class PortalSecurityConfig { - - // This method is the equivalent of GlobalProperties.usersMustAuthenticate() - // method in the org.mskcc.cbio.portal.util package. Update both when changes are needed. - public static boolean userAuthorizationEnabled(String authenticate) { - return authenticate != null - && !authenticate.equals("false") - && !authenticate.equals("noauthsessionservice") - && !authenticate.contains("social_auth"); - } - -} diff --git a/utils/src/test/resources/logback.xml b/utils/src/test/resources/logback.xml deleted file mode 100644 index 9d21a927c45..00000000000 --- a/utils/src/test/resources/logback.xml +++ /dev/null @@ -1,24 +0,0 @@ - - - - - %d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n - - - - - - - - - - - \ No newline at end of file diff --git a/web/pom.xml b/web/pom.xml deleted file mode 100644 index 6fd0482d0df..00000000000 --- a/web/pom.xml +++ /dev/null @@ -1,168 +0,0 @@ - - - - - master - org.mskcc.cbio - - 0-unknown-version-SNAPSHOT - - 4.0.0 - web - Portal Web Layer - Web Module for Portal - - - - org.mskcc.cbio - service - - - cglib - cglib - - - javax.servlet - javax.servlet-api - - - - com.googlecode.json-simple - json-simple - - - io.springfox - springfox-oas - - - io.springfox - springfox-spring-web - - - - io.springfox - springfox-boot-starter - - - io.springfox - springfox-bean-validators - - - org.mapstruct - mapstruct - - - junit - junit - - - org.springframework - spring-test - - - com.jayway.jsonpath - json-path-assert - - - org.apache.commons - commons-lang3 - - - com.github.romain-warnan - simple-java-bitly - - - commons-validator - commons-validator - - - io.sentry - sentry-spring - - - org.aspectj - aspectjweaver - - - com.datumbox - datumbox-framework-lib - - - org.mongodb - mongo-java-driver - - - com.fasterxml.jackson.core - jackson-databind - - - org.mockito - mockito-core - - - org.springframework.security - spring-security-web - - - org.springframework.security - spring-security-test - - - org.springframework - spring-jdbc - - - org.springframework - spring-webmvc - - - org.springframework - spring-web - - - javax.el - javax.el-api - - - org.glassfish.web - javax.el - - - - - - - - - org.apache.maven.plugins - maven-resources-plugin - - - copy-parent-resources - process-sources - - copy-resources - - - ${project.build.directory}/classes - - - ${project.parent.basedir}/src/main/resources - - **/springfox.properties - - - - - - - - - - - diff --git a/web/src/main/java/org/cbioportal/logging/LoggingAspect.java b/web/src/main/java/org/cbioportal/logging/LoggingAspect.java deleted file mode 100644 index abe7122dd8a..00000000000 --- a/web/src/main/java/org/cbioportal/logging/LoggingAspect.java +++ /dev/null @@ -1,32 +0,0 @@ -package org.cbioportal.logging; - -import org.aspectj.lang.JoinPoint; -import org.aspectj.lang.annotation.After; -import org.aspectj.lang.annotation.Aspect; -import org.aspectj.lang.annotation.Before; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.stereotype.Component; -import org.cbioportal.utils.config.annotation.ConditionalOnProperty; - -@Aspect -@Component -@ConditionalOnProperty(name = "aspect.enable.logging", havingValue = "true") -public class LoggingAspect { - - private static final Logger logger = LoggerFactory.getLogger("LoggingAspect"); - - @Before("execution(* org.cbioportal.web..*(..)) || execution(* org.cbioportal.service.impl..*(..)) || " + - "execution(* org.cbioportal.persistence.mybatis..*(..))") - public void logBefore(JoinPoint joinPoint) { - logger.debug("Entered: " + joinPoint.getTarget().getClass().getName() + "." + - joinPoint.getSignature().getName()); - } - - @After("execution(* org.cbioportal.web..*(..)) || execution(* org.cbioportal.service.impl..*(..)) || " + - "execution(* org.cbioportal.persistence.mybatis..*(..))") - public void logAfter(JoinPoint joinPoint) { - logger.debug("Exited: " + joinPoint.getTarget().getClass().getName() + "." + - joinPoint.getSignature().getName()); - } -} diff --git a/web/src/main/java/org/cbioportal/logging/SentryClientFactory.java b/web/src/main/java/org/cbioportal/logging/SentryClientFactory.java deleted file mode 100644 index 62e99735298..00000000000 --- a/web/src/main/java/org/cbioportal/logging/SentryClientFactory.java +++ /dev/null @@ -1,25 +0,0 @@ -package org.cbioportal.logging; - -import io.sentry.*; -import io.sentry.dsn.Dsn; -import io.sentry.event.helper.ContextBuilderHelper; -import io.sentry.event.helper.ForwardedAddressResolver; -import io.sentry.event.helper.HttpEventBuilderHelper; - -public class SentryClientFactory extends DefaultSentryClientFactory { - @Override - public SentryClient createSentryClient(Dsn dsn) { - SentryClient sentryClient = new SentryClient(createConnection(dsn), getContextManager(dsn)); - - /* - Create and use the ForwardedAddressResolver, which will use the - X-FORWARDED-FOR header for the remote address if it exists. - */ - ForwardedAddressResolver forwardedAddressResolver = new ForwardedAddressResolver(); - - sentryClient.addBuilderHelper(new HttpEventBuilderHelper(forwardedAddressResolver)); - - sentryClient.addBuilderHelper(new ContextBuilderHelper(sentryClient)); - return configureSentryClient(sentryClient, dsn); - } -} \ No newline at end of file diff --git a/web/src/main/java/org/cbioportal/proxy/ProxyController.java b/web/src/main/java/org/cbioportal/proxy/ProxyController.java deleted file mode 100644 index 92cce19ae58..00000000000 --- a/web/src/main/java/org/cbioportal/proxy/ProxyController.java +++ /dev/null @@ -1,218 +0,0 @@ -package org.cbioportal.proxy; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.*; -import org.springframework.http.converter.StringHttpMessageConverter; -import org.springframework.util.StringUtils; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.ResponseStatus; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.web.client.RestTemplate; - -import javax.servlet.http.HttpServletRequest; - -import java.io.*; -import java.net.URI; -import java.net.URISyntaxException; -import java.nio.charset.StandardCharsets; -import java.util.Properties; - - -@RestController -public class ProxyController { - private static final String DEFAULT_ONCOKB_URL = "https://public.api.oncokb.org/api/v1"; - private Properties properties; - - private Logger LOG = LoggerFactory.getLogger(ProxyController.class); - - @Autowired - private Monkifier monkifier; - - @RequestMapping("/**") - public String proxy(@RequestBody(required = false) String body, HttpMethod method, HttpServletRequest request) - throws URISyntaxException { - HttpHeaders httpHeaders = initHeaders(request); - - return exchangeData(body, - buildUri(request.getPathInfo(), request.getQueryString(), false), - method, - httpHeaders, - String.class - ).getBody(); - } - - @RequestMapping("/oncokb/**") - public String proxyOncokb( - @RequestBody(required = false) String body, - HttpMethod method, - HttpServletRequest request - ) throws URISyntaxException { - String token = request.getHeader("X-Proxy-User-Agreement"); - token = (token == null || token.isEmpty()) ? "NA": token; - - return exchangeOncokbData( - body, - request.getPathInfo().replaceFirst("/oncokb", ""), - request.getQueryString(), - method, - getOncokbHeaders(request, token) - ); - } - - @RequestMapping("/A8F74CD7851BDEE8DCD2E86AB4E2A711/**") - public String proxyEncodedOncokb( - @RequestBody(required = false) String body, - HttpMethod method, - HttpServletRequest request - ) throws URISyntaxException, UnsupportedEncodingException { - // make sure that the custom Proxy User Agreement header exists - String proxyUserAgreement = request.getHeader("X-Proxy-User-Agreement"); - if (proxyUserAgreement == null || !proxyUserAgreement.equals( - "I/We do NOT use this obfuscated proxy to programmatically obtain private OncoKB data. " + - "I/We know that I/we should get a valid data access token by registering at https://www.oncokb.org/account/register." - )) { - throw new OncoKBProxyUserAgreementException(); - } - - String decodedBody = body == null ? null: this.monkifier.decodeBase64(body); - String encodedPath = request.getPathInfo().replaceFirst("/A8F74CD7851BDEE8DCD2E86AB4E2A711/", ""); - String decodedPath = this.monkifier.decodeBase64(encodedPath); - String decodedQueryString = this.monkifier.decodeQueryString(request); - - String response = exchangeOncokbData( - decodedBody, - decodedPath, - decodedQueryString, - method, - getOncokbHeaders(request) - ); - - return "\"" + this.monkifier.encodeBase64(response) + "\""; - } - - private String exchangeOncokbData( - String body, - String pathInfo, - String queryString, - HttpMethod method, - HttpHeaders httpHeaders - ) throws URISyntaxException { - return exchangeData( - body, - buildUri(getOncokbApiUrl() + pathInfo, queryString), - method, - httpHeaders, - String.class - ).getBody(); - } - - private String getOncokbApiUrl() { - return getProperty("oncokb.public_api.url", DEFAULT_ONCOKB_URL); - } - - private HttpHeaders getOncokbHeaders(HttpServletRequest request) { - return this.getOncokbHeaders(request, null); - } - - private HttpHeaders getOncokbHeaders(HttpServletRequest request, String token) { - // load portal.properties - this.properties = loadProperties(getResourceStream("portal.properties")); - boolean showOncokb = Boolean.parseBoolean(getProperty("show.oncokb", "true")); - String oncokbToken = token == null ? getProperty("oncokb.token", ""): token; - - if (!showOncokb) { - throw new OncoKBServiceIsDisabledException(); - } - - HttpHeaders httpHeaders = initHeaders(request); - - if (!StringUtils.isEmpty(oncokbToken)) { - httpHeaders.add("Authorization", "Bearer " + oncokbToken); - } - - return httpHeaders; - } - - private HttpHeaders initHeaders(HttpServletRequest request) { - HttpHeaders httpHeaders = new HttpHeaders(); - - String contentType = request.getHeader("Content-Type"); - if (contentType != null) { - httpHeaders.setContentType(MediaType.valueOf(contentType)); - } - - return httpHeaders; - } - - private URI buildUri(String path, String queryString, boolean useSecureProtocol) throws URISyntaxException { - return buildUri((useSecureProtocol ? "https" : "http") + ":/" + path, queryString); - } - - private URI buildUri(String path, String queryString) throws URISyntaxException { - return new URI(path + (queryString == null ? "" : "?" + queryString)); - } - - private ResponseEntity exchangeData(String body, URI uri, HttpMethod method, HttpHeaders httpHeaders, Class responseType) { - RestTemplate restTemplate = new RestTemplate(); - restTemplate.getMessageConverters().add(0, new StringHttpMessageConverter(StandardCharsets.UTF_8)); - return restTemplate.exchange(uri, method, new HttpEntity<>(body, httpHeaders), responseType); - } - - private String getProperty(String key, String defaultValue) { - String propertyValue = this.properties.getProperty(key, defaultValue); - return System.getProperty(key, propertyValue); - } - - private InputStream getResourceStream(String propertiesFileName) - { - String resourceFilename = null; - InputStream resourceFIS = null; - - try { - String home = System.getenv("PORTAL_HOME"); - if (home != null) { - resourceFilename = - home + File.separator + propertiesFileName; - resourceFIS = new FileInputStream(resourceFilename); - } - } catch (FileNotFoundException e) { - } - - if (resourceFIS == null) { - resourceFIS = this.getClass().getClassLoader(). - getResourceAsStream(propertiesFileName); - } - - return resourceFIS; - } - private Properties loadProperties(InputStream resourceInputStream) - { - Properties properties = new Properties(); - - try { - properties.load(resourceInputStream); - resourceInputStream.close(); - } - catch (IOException e) { - System.out.println("Error loading properties file: " + e.getMessage()); - } - - return properties; - } - - @ResponseStatus(code = HttpStatus.NOT_FOUND, reason = "OncoKB service is disabled") - public class OncoKBServiceIsDisabledException extends RuntimeException { - } - - @ResponseStatus(code = HttpStatus.FORBIDDEN, reason = "No OncoKB access token is provided") - public class NoOncoKBTokenProvidedException extends RuntimeException { - } - - @ResponseStatus(code = HttpStatus.BAD_REQUEST, reason = "Fair Usage Agreement is missing") - public class OncoKBProxyUserAgreementException extends RuntimeException { - } - -} \ No newline at end of file diff --git a/web/src/main/java/org/cbioportal/web/AlterationDriverAnnotationController.java b/web/src/main/java/org/cbioportal/web/AlterationDriverAnnotationController.java deleted file mode 100644 index 724d89403c0..00000000000 --- a/web/src/main/java/org/cbioportal/web/AlterationDriverAnnotationController.java +++ /dev/null @@ -1,43 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import org.cbioportal.model.CustomDriverAnnotationReport; -import org.cbioportal.service.AlterationDriverAnnotationService; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PostMapping; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; - -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "Custom driver annotations", description = " ") -public class AlterationDriverAnnotationController { - - @Autowired - private AlterationDriverAnnotationService alterationDriverAnnotationService; - - @PreAuthorize("hasPermission(#molecularProfileIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @PostMapping(value = "/custom-driver-annotation-report/fetch", - consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Return availability of custom driver annotations for molecular profiles") - public ResponseEntity fetchAlterationDriverAnnotationReport( - @RequestBody(required = true) List molecularProfileIds) { - - CustomDriverAnnotationReport customDriverAnnotationReport = alterationDriverAnnotationService.getCustomDriverAnnotationProps(molecularProfileIds); - - return new ResponseEntity<>(customDriverAnnotationReport, HttpStatus.OK); - } -} - diff --git a/web/src/main/java/org/cbioportal/web/AlterationEnrichmentController.java b/web/src/main/java/org/cbioportal/web/AlterationEnrichmentController.java deleted file mode 100644 index 2c86cc08469..00000000000 --- a/web/src/main/java/org/cbioportal/web/AlterationEnrichmentController.java +++ /dev/null @@ -1,63 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.*; -import org.cbioportal.service.AlterationEnrichmentService; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.*; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.Valid; -import java.util.*; -import java.util.stream.Collectors; - -@InternalApi -@RestController -@Validated -@Api(tags = "Alteration Enrichments", description = " ") -public class AlterationEnrichmentController { - - @Autowired - private AlterationEnrichmentService alterationEnrichmentService; - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @PostMapping(value = "/alteration-enrichments/fetch", - consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch alteration enrichments in molecular profiles") - public ResponseEntity> fetchAlterationEnrichments( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore - // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters, - @ApiIgnore - @Valid @RequestAttribute(required = false, value = "alterationEventTypes") AlterationFilter alterationEventTypes, - @ApiParam("Type of the enrichment e.g. SAMPLE or PATIENT") - @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, - @ApiParam(required = true, value = "List of groups containing sample identifiers and list of Alteration Types") - @Valid @RequestBody(required = false) MolecularProfileCasesGroupAndAlterationTypeFilter groupsAndAlterationTypes) throws MolecularProfileNotFoundException { - - Map> groupCaseIdentifierSet = interceptedMolecularProfileCasesGroupFilters.stream() - .collect(Collectors.toMap(MolecularProfileCasesGroupFilter::getName, - MolecularProfileCasesGroupFilter::getMolecularProfileCaseIdentifiers)); - - List alterationEnrichments = alterationEnrichmentService.getAlterationEnrichments( - groupCaseIdentifierSet, - enrichmentType, - alterationEventTypes); - - return new ResponseEntity<>(alterationEnrichments, HttpStatus.OK); - } -} - diff --git a/web/src/main/java/org/cbioportal/web/CacheController.java b/web/src/main/java/org/cbioportal/web/CacheController.java deleted file mode 100644 index cdf42972849..00000000000 --- a/web/src/main/java/org/cbioportal/web/CacheController.java +++ /dev/null @@ -1,78 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.persistence.StudyRepository; -import org.cbioportal.service.CacheService; -import org.cbioportal.service.exception.CacheOperationException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestHeader; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; - -import java.util.List; -import java.util.stream.Collectors; - -@RestController -@Validated -@InternalApi -@Api(tags = "Cache") -public class CacheController { - - @Autowired - private CacheService cacheService; - - @Value("${cache.endpoint.api-key:not set}") - private String requiredApiKey; - - @Value("${cache.endpoint.enabled:false}") - private boolean cacheEndpointEnabled; - - @RequestMapping(value = "/cache", method = RequestMethod.DELETE, produces = MediaType.TEXT_PLAIN_VALUE) - @ApiOperation("Clear and reinitialize caches") - public ResponseEntity clearAllCaches( - @ApiParam("Secret API key passed in HTTP header. The key is configured in portal.properties of the portal instance.") - @RequestHeader(value = "X-API-KEY") String providedApiKey, - @ApiParam("Clear Spring-managed caches") - @RequestParam(defaultValue = "true", required = false) final boolean springManagedCache) - throws CacheOperationException { - if (!cacheEndpointEnabled) { - return new ResponseEntity<>("Cache endpoint is disabled for this instance.", HttpStatus.NOT_FOUND); - } - if ("not set".equals(requiredApiKey) || ! requiredApiKey.equals(providedApiKey)) { - return new ResponseEntity<>("", HttpStatus.UNAUTHORIZED); - } - cacheService.clearCaches(springManagedCache); - return new ResponseEntity<>("Flushed all caches!!!", HttpStatus.OK); - } - - @RequestMapping(value = "/cache/{studyId}", method = RequestMethod.DELETE, produces = MediaType.TEXT_PLAIN_VALUE) - @ApiOperation("Clear and reinitialize caches after import/removal/update of a study") - public ResponseEntity clearCachesForStudy( - @ApiParam("Secret API key passed in HTTP header. The key is configured in portal.properties of the portal instance.") - @RequestHeader(value = "X-API-KEY") String providedApiKey, - @PathVariable String studyId, - @ApiParam("Clear Spring-managed caches") - @RequestParam(defaultValue = "true", required = false) final boolean springManagedCache) - throws CacheOperationException { - if (!cacheEndpointEnabled) { - return new ResponseEntity<>("Cache endpoint is disabled for this instance.", HttpStatus.NOT_FOUND); - } - if ("not set".equals(requiredApiKey) || ! requiredApiKey.equals(providedApiKey)) { - return new ResponseEntity<>("", HttpStatus.UNAUTHORIZED); - } - - cacheService.clearCachesForStudy(studyId, springManagedCache); - return new ResponseEntity<>("Flushed "+ studyId +" caches!!!", HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/CacheStatsController.java b/web/src/main/java/org/cbioportal/web/CacheStatsController.java deleted file mode 100644 index c8418280f74..00000000000 --- a/web/src/main/java/org/cbioportal/web/CacheStatsController.java +++ /dev/null @@ -1,55 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.service.CacheStatisticsService; -import org.cbioportal.service.exception.CacheNotFoundException; -import org.cbioportal.utils.config.annotation.ConditionalOnProperty; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import java.util.List; - -@RestController -@Validated -@Api(tags = "CacheStats", hidden = true, description = " ") -@ApiIgnore -@ConditionalOnProperty(name = "persistence.cache_type", havingValue = {"ehcache-heap", "ehcache-disk", "ehcache-hybrid", "redis"}) -public class CacheStatsController { - - @Autowired - public CacheStatisticsService cacheStatisticsService; - - @RequestMapping(value = "/{cache}/keysInCache", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get list of keys in cache") - public ResponseEntity> getKeysInCache( - @ApiParam(required = true, value = "Cache name") - @PathVariable String cache) throws CacheNotFoundException { - List strings = cacheStatisticsService.getKeysInCache(cache); - return new ResponseEntity<>(strings, HttpStatus.OK); - } - - @RequestMapping(value = "/{cache}/keyCountsPerClass", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get counts of keys per repository class") - public ResponseEntity> getKeyCountsPerClass( - @ApiParam(required = true, value = "Cache name") - @PathVariable String cache) throws CacheNotFoundException { - List strings = cacheStatisticsService.getKeyCountsPerClass(cache); - return new ResponseEntity<>(strings, HttpStatus.OK); - } - - @RequestMapping(value = "/cacheStatistics", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get general cache statistics") - public ResponseEntity getCacheStatistics() throws CacheNotFoundException { - return new ResponseEntity<>(cacheStatisticsService.getCacheStatistics(), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/CancerTypeController.java b/web/src/main/java/org/cbioportal/web/CancerTypeController.java deleted file mode 100644 index facef9d4561..00000000000 --- a/web/src/main/java/org/cbioportal/web/CancerTypeController.java +++ /dev/null @@ -1,78 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.TypeOfCancer; -import org.cbioportal.service.CancerTypeService; -import org.cbioportal.service.exception.CancerTypeNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.CancerTypeSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import java.util.List; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.CANCER_TYPES, description = " ") -public class CancerTypeController { - - @Autowired - private CancerTypeService cancerTypeService; - - @RequestMapping(value = "/cancer-types", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all cancer types") - public ResponseEntity> getAllCancerTypes( - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") final Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) final Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) final Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) final CancerTypeSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") final Direction direction) { - - if (projection == Projection.META) { - final HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, cancerTypeService.getMetaCancerTypes().getTotalCount() - .toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - cancerTypeService.getAllCancerTypes(projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @RequestMapping(value = "/cancer-types/{cancerTypeId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get a cancer type") - public ResponseEntity getCancerType( - @ApiParam(required = true, value = "Cancer Type ID e.g. acc") - @PathVariable final String cancerTypeId) throws CancerTypeNotFoundException { - return new ResponseEntity<>(cancerTypeService.getCancerType(cancerTypeId), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/ClinicalAttributeController.java b/web/src/main/java/org/cbioportal/web/ClinicalAttributeController.java deleted file mode 100644 index b51f1020675..00000000000 --- a/web/src/main/java/org/cbioportal/web/ClinicalAttributeController.java +++ /dev/null @@ -1,151 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import java.util.*; -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import javax.validation.Valid; -import org.cbioportal.model.ClinicalAttribute; -import org.cbioportal.model.ClinicalAttributeCount; -import org.cbioportal.service.ClinicalAttributeService; -import org.cbioportal.service.exception.ClinicalAttributeNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.ClinicalAttributeCountFilter; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.SampleIdentifier; -import org.cbioportal.web.parameter.sort.ClinicalAttributeSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.CLINICAL_ATTRIBUTES, description = " ") -public class ClinicalAttributeController { - - @Autowired - private ClinicalAttributeService clinicalAttributeService; - - @RequestMapping(value = "/clinical-attributes", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all clinical attributes") - public ResponseEntity> getAllClinicalAttributes( - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ClinicalAttributeSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalAttributeService.getMetaClinicalAttributes() - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalAttributeService.getAllClinicalAttributes(projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/clinical-attributes", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all clinical attributes in the specified study") - public ResponseEntity> getAllClinicalAttributesInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ClinicalAttributeSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalAttributeService - .getMetaClinicalAttributesInStudy(studyId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalAttributeService.getAllClinicalAttributesInStudy(studyId, projection.name(), pageSize, - pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), - HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/clinical-attributes/{clinicalAttributeId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get specified clinical attribute") - public ResponseEntity getClinicalAttributeInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value= "Clinical Attribute ID e.g. CANCER_TYPE") - @PathVariable String clinicalAttributeId) - throws ClinicalAttributeNotFoundException, StudyNotFoundException { - - return new ResponseEntity<>(clinicalAttributeService.getClinicalAttribute(studyId, clinicalAttributeId), - HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-attributes/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical attributes") - public ResponseEntity> fetchClinicalAttributes( - @ApiParam(required = true, value = "List of Study IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody List studyIds, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalAttributeService.fetchMetaClinicalAttributes( - studyIds).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>(clinicalAttributeService.fetchClinicalAttributes(studyIds, projection.name()), - HttpStatus.OK); - } - } - -} diff --git a/web/src/main/java/org/cbioportal/web/ClinicalAttributeCountController.java b/web/src/main/java/org/cbioportal/web/ClinicalAttributeCountController.java deleted file mode 100644 index ffc708d16b2..00000000000 --- a/web/src/main/java/org/cbioportal/web/ClinicalAttributeCountController.java +++ /dev/null @@ -1,79 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import java.util.*; -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import javax.validation.Valid; -import org.cbioportal.model.ClinicalAttribute; -import org.cbioportal.model.ClinicalAttributeCount; -import org.cbioportal.service.ClinicalAttributeService; -import org.cbioportal.service.exception.ClinicalAttributeNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.InternalApiTags; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.ClinicalAttributeCountFilter; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.SampleIdentifier; -import org.cbioportal.web.parameter.sort.ClinicalAttributeSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -@InternalApi -@RestController -@Validated -@Api(tags = InternalApiTags.CLINICAL_ATTRIBUTES_COUNT, description = " ") -public class ClinicalAttributeCountController { - - @Autowired - private ClinicalAttributeService clinicalAttributeService; - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-attributes/counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get counts for clinical attributes according to their data availability for selected samples/patients") - public ResponseEntity> getClinicalAttributeCounts( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedClinicalAttributeCountFilter") ClinicalAttributeCountFilter interceptedClinicalAttributeCountFilter, - @ApiParam(required = true, value = "List of SampleIdentifiers or Sample List ID") - @Valid @RequestBody(required = false) ClinicalAttributeCountFilter clinicalAttributeCountFilter) { - - List clinicalAttributeCountList; - if (interceptedClinicalAttributeCountFilter.getSampleListId() != null) { - clinicalAttributeCountList = clinicalAttributeService.getClinicalAttributeCountsBySampleListId( - interceptedClinicalAttributeCountFilter.getSampleListId()); - } else { - List sampleIdentifiers = interceptedClinicalAttributeCountFilter.getSampleIdentifiers(); - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - for (SampleIdentifier sampleIdentifier : sampleIdentifiers) { - studyIds.add(sampleIdentifier.getStudyId()); - sampleIds.add(sampleIdentifier.getSampleId()); - } - clinicalAttributeCountList = clinicalAttributeService.getClinicalAttributeCountsBySampleIds(studyIds, sampleIds); - } - - return new ResponseEntity<>(clinicalAttributeCountList, HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/ClinicalDataController.java b/web/src/main/java/org/cbioportal/web/ClinicalDataController.java deleted file mode 100644 index 687f9e0fe83..00000000000 --- a/web/src/main/java/org/cbioportal/web/ClinicalDataController.java +++ /dev/null @@ -1,233 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import java.util.*; -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.Valid; -import org.cbioportal.model.ClinicalData; -import org.cbioportal.service.ClinicalDataService; -import org.cbioportal.service.exception.PatientNotFoundException; -import org.cbioportal.service.exception.SampleNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.ClinicalDataIdentifier; -import org.cbioportal.web.parameter.ClinicalDataMultiStudyFilter; -import org.cbioportal.web.parameter.ClinicalDataSingleStudyFilter; -import org.cbioportal.web.parameter.ClinicalDataType; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.ClinicalDataSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.CLINICAL_DATA, description = " ") -public class ClinicalDataController { - - public static final int CLINICAL_DATA_MAX_PAGE_SIZE = 10000000; - private static final String CLINICAL_DATA_DEFAULT_PAGE_SIZE = "10000000"; - - @Autowired - private ClinicalDataService clinicalDataService; - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}/clinical-data", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all clinical data of a sample in a study") - public ResponseEntity> getAllClinicalDataOfSampleInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Sample ID e.g. TCGA-OR-A5J2-01") - @PathVariable String sampleId, - @ApiParam("Attribute ID e.g. CANCER_TYPE") - @RequestParam(required = false) String attributeId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(CLINICAL_DATA_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = CLINICAL_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ClinicalDataSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws SampleNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.getMetaSampleClinicalData( - studyId, sampleId, attributeId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalDataService.getAllClinicalDataOfSampleInStudy( - studyId, sampleId, attributeId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/clinical-data", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all clinical data of a patient in a study") - public ResponseEntity> getAllClinicalDataOfPatientInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Patient ID e.g. TCGA-OR-A5J2") - @PathVariable String patientId, - @ApiParam("Attribute ID e.g. AGE") - @RequestParam(required = false) String attributeId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(CLINICAL_DATA_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = CLINICAL_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ClinicalDataSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.getMetaPatientClinicalData( - studyId, patientId, attributeId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalDataService.getAllClinicalDataOfPatientInStudy( - studyId, patientId, attributeId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/clinical-data", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all clinical data in a study") - public ResponseEntity> getAllClinicalDataInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Attribute ID e.g. CANCER_TYPE") - @RequestParam(required = false) String attributeId, - @ApiParam("Type of the clinical data") - @RequestParam(defaultValue = "SAMPLE") ClinicalDataType clinicalDataType, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(CLINICAL_DATA_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = CLINICAL_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ClinicalDataSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.getMetaAllClinicalData(studyId, - attributeId, clinicalDataType.name()).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalDataService.getAllClinicalDataInStudy(studyId, attributeId, - clinicalDataType.name(), projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/clinical-data/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical data by patient IDs or sample IDs (specific study)") - public ResponseEntity> fetchAllClinicalDataInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Type of the clinical data") - @RequestParam(defaultValue = "SAMPLE") ClinicalDataType clinicalDataType, - @ApiParam(required = true, value = "List of patient or sample IDs and attribute IDs") - @Valid @RequestBody ClinicalDataSingleStudyFilter clinicalDataSingleStudyFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.fetchMetaClinicalDataInStudy( - studyId, clinicalDataSingleStudyFilter.getIds(), clinicalDataSingleStudyFilter.getAttributeIds(), - clinicalDataType.name()).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalDataService.fetchAllClinicalDataInStudy(studyId, clinicalDataSingleStudyFilter.getIds(), - clinicalDataSingleStudyFilter.getAttributeIds(), clinicalDataType.name(), projection.name()), - HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-data/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical data by patient IDs or sample IDs (all studies)") - public ResponseEntity> fetchClinicalData( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataMultiStudyFilter") ClinicalDataMultiStudyFilter interceptedClinicalDataMultiStudyFilter, - @ApiParam("Type of the clinical data") - @RequestParam(defaultValue = "SAMPLE") ClinicalDataType clinicalDataType, - @ApiParam(required = true, value = "List of patient or sample identifiers and attribute IDs") - @Valid @RequestBody(required = false) ClinicalDataMultiStudyFilter clinicalDataMultiStudyFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - List studyIds = new ArrayList<>(); - List ids = new ArrayList<>(); - - for (ClinicalDataIdentifier identifier : interceptedClinicalDataMultiStudyFilter.getIdentifiers()) { - studyIds.add(identifier.getStudyId()); - ids.add(identifier.getEntityId()); - } - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalDataService.fetchMetaClinicalData(studyIds, ids, - interceptedClinicalDataMultiStudyFilter.getAttributeIds(), clinicalDataType.name()).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalDataService.fetchClinicalData(studyIds, ids, interceptedClinicalDataMultiStudyFilter.getAttributeIds(), - clinicalDataType.name(), projection.name()), HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/ClinicalEventController.java b/web/src/main/java/org/cbioportal/web/ClinicalEventController.java deleted file mode 100644 index e9b07cae95a..00000000000 --- a/web/src/main/java/org/cbioportal/web/ClinicalEventController.java +++ /dev/null @@ -1,114 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.ClinicalEvent; -import org.cbioportal.service.ClinicalEventService; -import org.cbioportal.service.exception.PatientNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.InternalApiTags; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.ClinicalEventSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = InternalApiTags.CLINICAL_EVENTS, description = " ") -public class ClinicalEventController { - - @Autowired - private ClinicalEventService clinicalEventService; - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/clinical-events", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all clinical events of a patient in a study") - public ResponseEntity> getAllClinicalEventsOfPatientInStudy( - @ApiParam(required = true, value = "Study ID e.g. lgg_ucsf_2014") - @PathVariable String studyId, - @ApiParam(required = true, value = "Patient ID e.g. P01") - @PathVariable String patientId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ClinicalEventSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalEventService.getMetaPatientClinicalEvents( - studyId, patientId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalEventService.getAllClinicalEventsOfPatientInStudy( - studyId, patientId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/clinical-events", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all clinical events in a study") - public ResponseEntity> getAllClinicalEventsInStudy( - @ApiParam(required = true, value = "Study ID e.g. lgg_ucsf_2014") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ClinicalEventSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, clinicalEventService.getMetaClinicalEvents( - studyId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - clinicalEventService.getAllClinicalEventsInStudy( - studyId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/CoExpressionController.java b/web/src/main/java/org/cbioportal/web/CoExpressionController.java deleted file mode 100644 index fd208ce2af3..00000000000 --- a/web/src/main/java/org/cbioportal/web/CoExpressionController.java +++ /dev/null @@ -1,75 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.CoExpression; -import org.cbioportal.model.EntityType; -import org.cbioportal.service.CoExpressionService; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.CoExpressionFilter; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.Valid; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "Co-Expressions", description = " ") -public class CoExpressionController { - - @Autowired - private CoExpressionService coExpressionService; - - // requires permission to access both molecularProfileIdA and molecularProfileIdB because service layer does not enforce requirement that both profiles are in the same study - @PreAuthorize("hasPermission(#molecularProfileIdA, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ) and hasPermission(#molecularProfileIdB, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/co-expressions/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Calculates correlations between a genetic entity from a specific profile and another profile from the same study") - public ResponseEntity> fetchCoExpressions( - @ApiParam(required = true, value = "Molecular Profile ID from the Genetic Entity referenced in the co-expression filter e.g. acc_tcga_rna_seq_v2_mrna") - @RequestParam String molecularProfileIdA, - @ApiParam(required = true, value = "Molecular Profile ID (can be the same as molecularProfileIdA) e.g. acc_tcga_rna_seq_v2_mrna") - @RequestParam String molecularProfileIdB, - @ApiParam(required = true, value = "List of Sample IDs/Sample List ID and Entrez Gene ID/Gene set ID") - @Valid @RequestBody CoExpressionFilter coExpressionFilter, - @ApiParam("Threshold") - @RequestParam(defaultValue = "0.3") Double threshold) throws Exception { - - List coExpressionList; - String geneticEntityId = null; - EntityType geneticEntityType = null; - - if (coExpressionFilter.getEntrezGeneId() != null) { - geneticEntityId = coExpressionFilter.getEntrezGeneId().toString(); - geneticEntityType = EntityType.GENE; - } else { - geneticEntityId = coExpressionFilter.getGenesetId(); - geneticEntityType = EntityType.GENESET; - } - - if (coExpressionFilter.getSampleListId() != null) { - coExpressionList = coExpressionService.getCoExpressions(geneticEntityId, - geneticEntityType, coExpressionFilter.getSampleListId(), molecularProfileIdA, molecularProfileIdB, - threshold); - } else { - coExpressionList = coExpressionService.fetchCoExpressions(geneticEntityId, - geneticEntityType, coExpressionFilter.getSampleIds(), molecularProfileIdA, molecularProfileIdB, - threshold); - } - - return new ResponseEntity<>(coExpressionList, HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/CopyNumberSegmentController.java b/web/src/main/java/org/cbioportal/web/CopyNumberSegmentController.java deleted file mode 100644 index 95f6ee5e75b..00000000000 --- a/web/src/main/java/org/cbioportal/web/CopyNumberSegmentController.java +++ /dev/null @@ -1,126 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.CopyNumberSeg; -import org.cbioportal.service.CopyNumberSegmentService; -import org.cbioportal.service.exception.SampleNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.SampleIdentifier; -import org.cbioportal.web.parameter.sort.CopyNumberSegmentSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import java.util.*; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.COPY_NUMBER_SEGMENTS, description = " ") -public class CopyNumberSegmentController { - - private static final int COPY_NUMBER_SEGMENT_MAX_PAGE_SIZE = 20000; - private static final String COPY_NUMBER_SEGMENT_DEFAULT_PAGE_SIZE = "20000"; - - @Autowired - private CopyNumberSegmentService copyNumberSegmentService; - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}/copy-number-segments", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get copy number segments in a sample in a study") - public ResponseEntity> getCopyNumberSegmentsInSampleInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Sample ID e.g. TCGA-OR-A5J2-01") - @PathVariable String sampleId, - @ApiParam("Chromosome") - @RequestParam(required = false) String chromosome, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(COPY_NUMBER_SEGMENT_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = COPY_NUMBER_SEGMENT_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) CopyNumberSegmentSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws SampleNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, copyNumberSegmentService - .getMetaCopyNumberSegmentsInSampleInStudy(studyId, sampleId, chromosome).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - copyNumberSegmentService.getCopyNumberSegmentsInSampleInStudy(studyId, sampleId, chromosome, - projection.name(), pageSize, pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), - direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/copy-number-segments/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch copy number segments by sample ID") - public ResponseEntity> fetchCopyNumberSegments( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @RequestAttribute(required = false, value = "interceptedSampleIdentifiers") List interceptedSampleIdentifiers, - @ApiParam(required = true, value = "List of sample identifiers") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody(required = false) List sampleIdentifiers, - @ApiParam("Chromosome") - @RequestParam(required = false) String chromosome, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - - for (SampleIdentifier sampleIdentifier : interceptedSampleIdentifiers) { - studyIds.add(sampleIdentifier.getStudyId()); - sampleIds.add(sampleIdentifier.getSampleId()); - } - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, copyNumberSegmentService - .fetchMetaCopyNumberSegments(studyIds, sampleIds, chromosome).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - copyNumberSegmentService.fetchCopyNumberSegments(studyIds, sampleIds, chromosome, projection.name()), - HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/CosmicCountController.java b/web/src/main/java/org/cbioportal/web/CosmicCountController.java deleted file mode 100644 index 3fea8c823f1..00000000000 --- a/web/src/main/java/org/cbioportal/web/CosmicCountController.java +++ /dev/null @@ -1,43 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.CosmicMutation; -import org.cbioportal.service.CosmicCountService; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; - -import javax.validation.constraints.Size; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "Cosmic Counts", description = " ") -public class CosmicCountController { - - private static final int COSMIC_COUNT_MAX_PAGE_SIZE = 50000; - - @Autowired - private CosmicCountService cosmicCountService; - - @RequestMapping(value = "/cosmic-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get counts within the COSMIC database by keywords") - public ResponseEntity> fetchCosmicCounts( - @ApiParam(required = true, value = "List of keywords") - @Size(min = 1, max = COSMIC_COUNT_MAX_PAGE_SIZE) - @RequestBody List keywords) { - - return new ResponseEntity<>(cosmicCountService.fetchCosmicCountsByKeywords(keywords), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/DataAccessTokenController.java b/web/src/main/java/org/cbioportal/web/DataAccessTokenController.java deleted file mode 100644 index 06ddc00f27e..00000000000 --- a/web/src/main/java/org/cbioportal/web/DataAccessTokenController.java +++ /dev/null @@ -1,144 +0,0 @@ -/* -* This file is part of cBioPortal. -* -* cBioPortal is free software: you can redistribute it and/or modify -* it under the terms of the GNU Affero General Public License as -* published by the Free Software Foundation, either version 3 of the -* License. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU Affero General Public License for more details. -* -* You should have received a copy of the GNU Affero General Public License -* along with this program. If not, see . -*/ - -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.apache.commons.lang3.StringUtils; -import org.cbioportal.model.DataAccessToken; -import org.cbioportal.service.DataAccessTokenService; -import org.cbioportal.service.exception.DataAccessTokenNoUserIdentityException; -import org.cbioportal.service.exception.DataAccessTokenProhibitedUserException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.authority.SimpleGrantedAuthority; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; -import org.springframework.web.client.HttpClientErrorException; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.util.Arrays; -import java.util.HashSet; -import java.util.List; -import java.util.Set; - -@InternalApi -@RequestMapping // replaces @RestController; controller is created conditionally in DataAccessTokenConfig of security-spring module -@ResponseBody // needed when not using @RestController annotation -@Validated -@Api(tags = "Data Access Tokens", description = " ") -public class DataAccessTokenController { - - @Value("${dat.unauth_users:anonymousUser}") - private String[] USERS_WHO_CANNOT_USE_TOKENS; - - private static String userRoleToAccessToken; - @Value("${download_group:}") // default is empty string - public void setUserRoleToAccessToken(String property) { userRoleToAccessToken = property; } - - @Autowired - private DataAccessTokenService tokenService; - private Set usersWhoCannotUseTokenSet; - - @Autowired - private void initializeUsersWhoCannotUseTokenSet() { - usersWhoCannotUseTokenSet = new HashSet<>(Arrays.asList(USERS_WHO_CANNOT_USE_TOKENS)); - } - - private String fileName = "cbioportal_data_access_token.txt"; - - @PostMapping(value = "/data-access-tokens", produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all data access tokens") - public ResponseEntity createDataAccessToken(Authentication authentication) throws HttpClientErrorException { - String userName = getAuthenticatedUser(authentication); - DataAccessToken token = tokenService.createDataAccessToken(userName); - if (token == null) { - return new ResponseEntity<>(token, HttpStatus.NOT_FOUND); - } - return new ResponseEntity<>(token, HttpStatus.CREATED); - } - - @RequestMapping(method = RequestMethod.GET, value = "/data-access-tokens") - @ApiOperation("Retrieve all data access tokens") - public ResponseEntity> getAllDataAccessTokens(HttpServletRequest request, - Authentication authentication) { - String userName = getAuthenticatedUser(authentication); - List allDataAccessTokens = tokenService.getAllDataAccessTokens(userName); - return new ResponseEntity<>(allDataAccessTokens, HttpStatus.OK); - } - - @RequestMapping(method = RequestMethod.GET, value = "/data-access-tokens/{token}") - @ApiOperation("Retrieve an existing data access token") - public ResponseEntity getDataAccessToken( - @ApiParam(required = true, value = "token") @PathVariable String token) { - DataAccessToken dataAccessToken = tokenService.getDataAccessTokenInfo(token); - return new ResponseEntity<>(dataAccessToken, HttpStatus.OK); - } - - @RequestMapping(method = RequestMethod.DELETE, value = "/data-access-tokens") - @ApiOperation("Delete all data access tokens") - public void revokeAllDataAccessTokens(Authentication authentication) { - tokenService.revokeAllDataAccessTokens(getAuthenticatedUser(authentication)); - } - - @RequestMapping(method = RequestMethod.DELETE, value = "/data-access-tokens/{token}") - @ApiOperation("Delete a data access token") - public void revokeDataAccessToken(@ApiParam(required = true, value = "token") @PathVariable String token) { - tokenService.revokeDataAccessToken(token); - } - - // this is the entrypoint for the cBioPortal frontend to download a single user token - @RequestMapping(method = RequestMethod.GET, value = "/data-access-token") - @ApiOperation("Create a new data access token") - public ResponseEntity downloadDataAccessToken(Authentication authentication, - HttpServletRequest request, HttpServletResponse response) throws IOException { - - // for other methods add header to trigger download of the token by the browser - response.setHeader("Content-Disposition", "attachment; filename=" + fileName); - String userName = getAuthenticatedUser(authentication); - DataAccessToken token = tokenService.createDataAccessToken(userName); - if (token == null) { - return new ResponseEntity<>(null, HttpStatus.NOT_FOUND); - } - - return new ResponseEntity<>(token.toString(), HttpStatus.CREATED); - } - - private String getAuthenticatedUser(Authentication authentication) { - if (authentication == null || !authentication.isAuthenticated()) { - throw new DataAccessTokenNoUserIdentityException(); - } - String username = authentication.getName(); - if (usersWhoCannotUseTokenSet.contains(username)) { - throw new DataAccessTokenProhibitedUserException(); - } - if(StringUtils.isNotEmpty(userRoleToAccessToken) && - !authentication.getAuthorities().contains(new SimpleGrantedAuthority(userRoleToAccessToken))) { - throw new DataAccessTokenProhibitedUserException(); - } - return username; - } -} diff --git a/web/src/main/java/org/cbioportal/web/DiscreteCopyNumberCountController.java b/web/src/main/java/org/cbioportal/web/DiscreteCopyNumberCountController.java deleted file mode 100644 index dbe37f05e48..00000000000 --- a/web/src/main/java/org/cbioportal/web/DiscreteCopyNumberCountController.java +++ /dev/null @@ -1,73 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.CopyNumberCount; -import org.cbioportal.model.DiscreteCopyNumberData; -import org.cbioportal.model.meta.BaseMeta; -import org.cbioportal.service.DiscreteCopyNumberService; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.InternalApiTags; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.CopyNumberCountIdentifier; -import org.cbioportal.web.parameter.DiscreteCopyNumberEventType; -import org.cbioportal.web.parameter.DiscreteCopyNumberFilter; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.Projection; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.Valid; -import javax.validation.constraints.Size; -import java.util.ArrayList; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = InternalApiTags.DISCRETE_COPY_NUMBER_ALTERATION_COUNTS, description = " ") -public class DiscreteCopyNumberCountController { - - private static final int COPY_NUMBER_COUNT_MAX_PAGE_SIZE = 50000; - - @Autowired - private DiscreteCopyNumberService discreteCopyNumberService; - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/discrete-copy-number-counts/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get counts of specific genes and alterations within a CNA molecular profile") - public ResponseEntity> fetchCopyNumberCounts( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_gistic") - @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "List of copy number count identifiers") - @Size(min = 1, max = COPY_NUMBER_COUNT_MAX_PAGE_SIZE) - @RequestBody List copyNumberCountIdentifiers) - throws MolecularProfileNotFoundException { - - List entrezGeneIds = new ArrayList<>(); - List alterations = new ArrayList<>(); - - for (CopyNumberCountIdentifier copyNumberCountIdentifier : copyNumberCountIdentifiers) { - - entrezGeneIds.add(copyNumberCountIdentifier.getEntrezGeneId()); - alterations.add(copyNumberCountIdentifier.getAlteration()); - } - - return new ResponseEntity<>(discreteCopyNumberService.fetchCopyNumberCounts(molecularProfileId, entrezGeneIds, - alterations), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/ExpressionEnrichmentController.java b/web/src/main/java/org/cbioportal/web/ExpressionEnrichmentController.java deleted file mode 100644 index 4072480eb13..00000000000 --- a/web/src/main/java/org/cbioportal/web/ExpressionEnrichmentController.java +++ /dev/null @@ -1,106 +0,0 @@ -package org.cbioportal.web; - -import java.util.*; -import java.util.stream.Collectors; - -import javax.validation.Valid; - -import org.cbioportal.model.ExpressionEnrichment; -import org.cbioportal.model.GenericAssayEnrichment; -import org.cbioportal.model.GenomicEnrichment; -import org.cbioportal.model.MolecularProfileCaseIdentifier; -import org.cbioportal.service.ExpressionEnrichmentService; -import org.cbioportal.service.exception.GenericAssayNotFoundException; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.model.EnrichmentType; -import org.cbioportal.web.parameter.MolecularProfileCasesGroupFilter; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import springfox.documentation.annotations.ApiIgnore; - -@InternalApi -@RestController -@Validated -@Api(tags = "Enrichments", description = " ") -public class ExpressionEnrichmentController { - @Autowired - private ExpressionEnrichmentService expressionEnrichmentService; - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/expression-enrichments/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch genomic enrichments in a molecular profile") - public ResponseEntity> fetchGenomicEnrichments( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiParam("Type of the enrichment e.g. SAMPLE or PATIENT") - @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, - @ApiParam(required = true, value = "List of groups containing sample and molecular profile identifiers") - @Valid @RequestBody(required = false) List groups, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters) throws MolecularProfileNotFoundException { - - return new ResponseEntity<>( - fetchExpressionEnrichments(enrichmentType, interceptedMolecularProfileCasesGroupFilters, false), - HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic-assay-enrichments/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch generic assay enrichments in a molecular profile") - public ResponseEntity> fetchGenericAssayEnrichments( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiParam("Type of the enrichment e.g. SAMPLE or PATIENT") - @RequestParam(defaultValue = "SAMPLE") EnrichmentType enrichmentType, - @ApiParam(required = true, value = "List of groups containing sample and molecular profile identifiers") - @Valid @RequestBody(required = false) List groups, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileCasesGroupFilters") List interceptedMolecularProfileCasesGroupFilters) - throws MolecularProfileNotFoundException, UnsupportedOperationException, GenericAssayNotFoundException { - - return new ResponseEntity<>( - fetchExpressionEnrichments(enrichmentType, interceptedMolecularProfileCasesGroupFilters, true), - HttpStatus.OK); - } - - private List fetchExpressionEnrichments(EnrichmentType enrichmentType, - List interceptedMolecularProfileCasesGroupFilters, - Boolean isRequestForGenericAssayEnrichments) throws MolecularProfileNotFoundException { - - Map> groupCaseIdentifierSet = interceptedMolecularProfileCasesGroupFilters - .stream().collect(Collectors.toMap(MolecularProfileCasesGroupFilter::getName, - MolecularProfileCasesGroupFilter::getMolecularProfileCaseIdentifiers)); - - Set molecularProfileIds = groupCaseIdentifierSet.values().stream() - .flatMap(molecularProfileCaseSet -> molecularProfileCaseSet.stream() - .map(MolecularProfileCaseIdentifier::getMolecularProfileId)) - .collect(Collectors.toSet()); - - if (molecularProfileIds.size() > 1) { - throw new UnsupportedOperationException("Multi-study expression enrichments is not yet implemented"); - } - - if (isRequestForGenericAssayEnrichments) { - return (List) expressionEnrichmentService.getGenericAssayNumericalEnrichments( - molecularProfileIds.iterator().next(), groupCaseIdentifierSet, enrichmentType); - } - - return (List) expressionEnrichmentService.getGenomicEnrichments(molecularProfileIds.iterator().next(), - groupCaseIdentifierSet, enrichmentType); - - } -} diff --git a/web/src/main/java/org/cbioportal/web/GeneController.java b/web/src/main/java/org/cbioportal/web/GeneController.java deleted file mode 100644 index 59adfbf1494..00000000000 --- a/web/src/main/java/org/cbioportal/web/GeneController.java +++ /dev/null @@ -1,119 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.Gene; -import org.cbioportal.service.GeneService; -import org.cbioportal.service.exception.GeneNotFoundException; -import org.cbioportal.service.exception.GeneWithMultipleEntrezIdsException; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.GeneIdType; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.GeneSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import java.util.List; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.GENES, description = " ") -public class GeneController { - - @Autowired - private GeneService geneService; - - @RequestMapping(value = "/genes", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all genes") - public ResponseEntity> getAllGenes( - @ApiParam("Search keyword that applies to hugo gene symbol of the genes") - @RequestParam(required = false) String keyword, - @ApiParam("Alias of the gene") - @RequestParam(required = false) String alias, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) GeneSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, geneService.getMetaGenes(keyword, alias).getTotalCount() - .toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - geneService.getAllGenes(keyword, alias, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @RequestMapping(value = "/genes/{geneId}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get a gene") - public ResponseEntity getGene( - @ApiParam(required = true, value = "Entrez Gene ID or Hugo Gene Symbol e.g. 1 or A1BG") - @PathVariable String geneId) throws GeneNotFoundException, GeneWithMultipleEntrezIdsException { - - return new ResponseEntity<>(geneService.getGene(geneId), HttpStatus.OK); - } - - @RequestMapping(value = "/genes/{geneId}/aliases", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get aliases of a gene") - public ResponseEntity> getAliasesOfGene( - @ApiParam(required = true, value = "Entrez Gene ID or Hugo Gene Symbol e.g. 1 or A1BG") - @PathVariable String geneId) throws GeneNotFoundException, GeneWithMultipleEntrezIdsException { - - return new ResponseEntity<>(geneService.getAliasesOfGene(geneId), HttpStatus.OK); - } - - @RequestMapping(value = "/genes/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch genes by ID") - public ResponseEntity> fetchGenes( - @ApiParam("Type of gene ID") - @RequestParam(defaultValue = "ENTREZ_GENE_ID") GeneIdType geneIdType, - @ApiParam(required = true, value = "List of Entrez Gene IDs or Hugo Gene Symbols") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody List geneIds, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, geneService.fetchMetaGenes(geneIds, geneIdType.name()) - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>(geneService.fetchGenes(geneIds, geneIdType.name(), projection.name()), - HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/GenePanelController.java b/web/src/main/java/org/cbioportal/web/GenePanelController.java deleted file mode 100644 index 93e3c293f14..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenePanelController.java +++ /dev/null @@ -1,101 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.GenePanel; -import org.cbioportal.model.GenePanelData; -import org.cbioportal.model.MolecularProfileCaseIdentifier; -import org.cbioportal.service.exception.GenePanelNotFoundException; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.service.GenePanelService; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.*; -import org.cbioportal.web.parameter.sort.GenePanelSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.util.CollectionUtils; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import javax.validation.Valid; -import java.util.*; -import java.util.stream.Collectors; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.GENE_PANELS, description = " ") -public class GenePanelController { - - @Autowired - private GenePanelService genePanelService; - - @RequestMapping(value = "/gene-panels", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all gene panels") - public ResponseEntity> getAllGenePanels( - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) GenePanelSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, genePanelService.getMetaGenePanels() - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - genePanelService.getAllGenePanels(projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @RequestMapping(value = "/gene-panels/{genePanelId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get gene panel") - public ResponseEntity getGenePanel( - @ApiParam(required = true, value = "Gene Panel ID e.g. NSCLC_UNITO_2016_PANEL") - @PathVariable String genePanelId) throws GenePanelNotFoundException { - - return new ResponseEntity<>(genePanelService.getGenePanel(genePanelId), HttpStatus.OK); - } - - @RequestMapping(value = "/gene-panels/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get gene panel") - public ResponseEntity> fetchGenePanels( - @ApiParam(required = true, value = "List of Gene Panel IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody List genePanelIds, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - return new ResponseEntity<>(genePanelService.fetchGenePanels(genePanelIds, projection.name()), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/GenePanelDataController.java b/web/src/main/java/org/cbioportal/web/GenePanelDataController.java deleted file mode 100644 index 03ebec52c4f..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenePanelDataController.java +++ /dev/null @@ -1,98 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.GenePanel; -import org.cbioportal.model.GenePanelData; -import org.cbioportal.model.MolecularProfileCaseIdentifier; -import org.cbioportal.service.GenePanelService; -import org.cbioportal.service.exception.GenePanelNotFoundException; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.*; -import org.cbioportal.web.parameter.sort.GenePanelSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.util.CollectionUtils; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.Valid; -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import java.util.Collection; -import java.util.HashSet; -import java.util.List; -import java.util.stream.Collectors; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.GENE_PANEL_DATA, description = " ") -public class GenePanelDataController { - - @Autowired - private GenePanelService genePanelService; - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/gene-panel-data/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get gene panel data") - public ResponseEntity> getGenePanelData( - @ApiParam(required = true, value = "Molecular Profile ID e.g. nsclc_unito_2016_mutations") - @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "List of Sample IDs/Sample List ID and Entrez Gene IDs") - @Valid @RequestBody GenePanelDataFilter genePanelDataFilter) throws MolecularProfileNotFoundException { - - List genePanelDataList; - if (genePanelDataFilter.getSampleListId() != null) { - genePanelDataList = genePanelService.getGenePanelData(molecularProfileId, - genePanelDataFilter.getSampleListId()); - } else { - genePanelDataList = genePanelService.fetchGenePanelData(molecularProfileId, - genePanelDataFilter.getSampleIds()); - } - - return new ResponseEntity<>(genePanelDataList, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/gene-panel-data/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch gene panel data") - public ResponseEntity> fetchGenePanelDataInMultipleMolecularProfiles( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedGenePanelDataMultipleStudyFilter") GenePanelDataMultipleStudyFilter interceptedGenePanelDataMultipleStudyFilter, - @ApiParam(required = true, value = "Gene panel data filter object") - @RequestBody(required = false) GenePanelDataMultipleStudyFilter genePanelDataMultipleStudyFilter) { - - List genePanelDataList; - if(CollectionUtils.isEmpty(interceptedGenePanelDataMultipleStudyFilter.getMolecularProfileIds())) { - List molecularProfileSampleIdentifiers = interceptedGenePanelDataMultipleStudyFilter.getSampleMolecularIdentifiers() - .stream() - .map(sampleMolecularIdentifier -> { - MolecularProfileCaseIdentifier profileCaseIdentifier = new MolecularProfileCaseIdentifier(); - profileCaseIdentifier.setMolecularProfileId(sampleMolecularIdentifier.getMolecularProfileId()); - profileCaseIdentifier.setCaseId(sampleMolecularIdentifier.getSampleId()); - return profileCaseIdentifier; - }) - .collect(Collectors.toList()); - - genePanelDataList = genePanelService.fetchGenePanelDataInMultipleMolecularProfiles(molecularProfileSampleIdentifiers); - } else { - genePanelDataList = genePanelService.fetchGenePanelDataByMolecularProfileIds(new HashSet<>(interceptedGenePanelDataMultipleStudyFilter.getMolecularProfileIds())); - } - - return new ResponseEntity<>(genePanelDataList, HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/GenericAssayController.java b/web/src/main/java/org/cbioportal/web/GenericAssayController.java deleted file mode 100644 index 652ffe3e97d..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenericAssayController.java +++ /dev/null @@ -1,106 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.apache.commons.lang3.StringUtils; -import springfox.documentation.annotations.ApiIgnore; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; -import java.util.List; -import java.util.stream.Collectors; - -import javax.validation.Valid; - -import org.cbioportal.model.GenericAssayData; -import org.cbioportal.model.meta.GenericAssayMeta; -import org.cbioportal.service.GenericAssayService; -import org.cbioportal.service.exception.GenericAssayNotFoundException; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.GenericAssayFilter; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.GenericAssayDataMultipleStudyFilter; -import org.cbioportal.web.parameter.GenericAssayMetaFilter; -import org.cbioportal.web.parameter.SampleMolecularIdentifier; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.GENERIC_ASSAYS, description = " ") -public class GenericAssayController { - - @Autowired - private GenericAssayService genericAssayService; - - // PreAuthorize is removed for performance reason - @RequestMapping(value = "/generic_assay_meta/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch meta data for generic-assay by ID") - public ResponseEntity> fetchGenericAssayMeta( - @ApiParam(required = true, value = "List of Molecular Profile ID or List of Stable ID") - @Valid @RequestBody GenericAssayMetaFilter genericAssayMetaFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws GenericAssayNotFoundException { - List result; - - if (genericAssayMetaFilter.getGenericAssayStableIds() == null) { - result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(null, genericAssayMetaFilter.getMolecularProfileIds(), projection.name()); - } else if (genericAssayMetaFilter.getMolecularProfileIds() == null) { - result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(genericAssayMetaFilter.getGenericAssayStableIds(), null, projection.name()); - } else { - result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(genericAssayMetaFilter.getGenericAssayStableIds(), genericAssayMetaFilter.getMolecularProfileIds(), projection.name()); - } - return new ResponseEntity<>(result, HttpStatus.OK); - } - - // PreAuthorize is removed for performance reason - @RequestMapping(value = "/generic-assay-meta/{molecularProfileId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch meta data for generic-assay by ID") - public ResponseEntity> getGenericAssayMeta( - @ApiParam(required = true, value = "Molecular Profile ID") - @PathVariable String molecularProfileId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws GenericAssayNotFoundException { - List result; - - result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(null, Arrays.asList(molecularProfileId), projection.name()); - - return new ResponseEntity<>(result, HttpStatus.OK); - } - - @RequestMapping(value = "/generic-assay-meta/generic-assay/{genericAssayStableId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch meta data for generic-assay by ID") - public ResponseEntity> getGenericAssayMeta_ga( - @ApiParam(required = false, value = "Generic Assay stable ID") - @PathVariable String genericAssayStableId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws GenericAssayNotFoundException { - List result; - result = genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Arrays.asList(genericAssayStableId), null, projection.name()); - - return new ResponseEntity<>(result, HttpStatus.OK); - } - - -} diff --git a/web/src/main/java/org/cbioportal/web/GenericAssayDataController.java b/web/src/main/java/org/cbioportal/web/GenericAssayDataController.java deleted file mode 100644 index 5b546f63889..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenericAssayDataController.java +++ /dev/null @@ -1,147 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.apache.commons.lang3.StringUtils; -import org.cbioportal.model.GenePanel; -import org.cbioportal.model.GenericAssayData; -import org.cbioportal.service.GenericAssayService; -import org.cbioportal.service.exception.GenePanelNotFoundException; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.*; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.Valid; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; -import java.util.List; -import java.util.stream.Collectors; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.GENERIC_ASSAY_DATA, description = " ") -public class GenericAssayDataController { - - @Autowired - private GenericAssayService genericAssayService; - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic-assay-data/{molecularProfileId}/generic-assay/{genericAssayStableId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get generic_assay_data in a molecular profile") - public ResponseEntity> getGenericAssayDataInMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID") - @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "Generic Assay stable ID") - @PathVariable String genericAssayStableId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { - - List result; - result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData(molecularProfileId, - null, Arrays.asList(genericAssayStableId) , projection.name())); - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, String.valueOf(result.size())); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>(result, HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic_assay_data/{molecularProfileId}/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("fetch generic_assay_data in a molecular profile") - public ResponseEntity> fetchGenericAssayDataInMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID") - @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "List of Sample IDs/Sample List ID and Generic Assay IDs") - @Valid @RequestBody GenericAssayFilter genericAssayDataFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { - - List result; - if (genericAssayDataFilter.getSampleListId() != null) { - result = filterEmptyGenericAssayData(genericAssayService.getGenericAssayData(molecularProfileId, - genericAssayDataFilter.getSampleListId(), genericAssayDataFilter.getGenericAssayStableIds(), projection.name())); - } else { - result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData(molecularProfileId, - genericAssayDataFilter.getSampleIds(), genericAssayDataFilter.getGenericAssayStableIds(), projection.name())); - } - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, String.valueOf(result.size())); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>(result, HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic_assay_data/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch generic_assay_data") - public ResponseEntity> fetchGenericAssayDataInMultipleMolecularProfiles( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @RequestAttribute(required = false, value = "interceptedGenericAssayDataMultipleStudyFilter") GenericAssayDataMultipleStudyFilter interceptedGenericAssayDataMultipleStudyFilter, - @ApiParam(required = true, value = "List of Molecular Profile ID and Sample ID pairs or List of Molecular" + - "Profile IDs and Generic Assay IDs") - @Valid @RequestBody(required = false) GenericAssayDataMultipleStudyFilter genericAssayDataMultipleStudyFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws MolecularProfileNotFoundException { - - List result; - if (interceptedGenericAssayDataMultipleStudyFilter.getMolecularProfileIds() != null) { - result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData( - interceptedGenericAssayDataMultipleStudyFilter.getMolecularProfileIds(), null, - interceptedGenericAssayDataMultipleStudyFilter.getGenericAssayStableIds(), projection.name())); - } else { - - List molecularProfileIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - extractMolecularProfileAndSampleIds(interceptedGenericAssayDataMultipleStudyFilter, molecularProfileIds, sampleIds); - result = filterEmptyGenericAssayData(genericAssayService.fetchGenericAssayData(molecularProfileIds, - sampleIds, interceptedGenericAssayDataMultipleStudyFilter.getGenericAssayStableIds(), projection.name())); - } - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, String.valueOf(result.size())); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>(result, HttpStatus.OK); - } - } - - private void extractMolecularProfileAndSampleIds(GenericAssayDataMultipleStudyFilter molecularDataMultipleStudyFilter, List molecularProfileIds, List sampleIds) { - for (SampleMolecularIdentifier sampleMolecularIdentifier : molecularDataMultipleStudyFilter.getSampleMolecularIdentifiers()) { - molecularProfileIds.add(sampleMolecularIdentifier.getMolecularProfileId()); - sampleIds.add(sampleMolecularIdentifier.getSampleId()); - } - } - - private List filterEmptyGenericAssayData(List genericAssayDataList) { - return genericAssayDataList.stream() - .filter(g -> StringUtils.isNotEmpty(g.getValue()) && !g.getValue().equals("NA")) - .collect(Collectors.toList()); - } -} diff --git a/web/src/main/java/org/cbioportal/web/GenesetController.java b/web/src/main/java/org/cbioportal/web/GenesetController.java deleted file mode 100644 index 9684e8830a1..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenesetController.java +++ /dev/null @@ -1,92 +0,0 @@ -package org.cbioportal.web; - -import java.util.List; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; - -import org.cbioportal.model.Geneset; -import org.cbioportal.service.GenesetService; -import org.cbioportal.service.exception.GenesetNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - -@InternalApi -@RestController -@Validated -@Api(tags = "Gene Sets", description = " ") -public class GenesetController { - - @Autowired - private GenesetService genesetService; - - @RequestMapping(value = "/genesets", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all gene sets") - public ResponseEntity> getAllGenesets( - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(Integer.MAX_VALUE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, genesetService.getMetaGenesets().getTotalCount() - .toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - genesetService.getAllGenesets(projection.name(), pageSize, pageNumber), HttpStatus.OK); - } - } - - @RequestMapping(value = "/genesets/{genesetId}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get a gene set") - public ResponseEntity getGeneset( - @ApiParam(required = true, value = "Gene set ID e.g. GNF2_ZAP70") - @PathVariable String genesetId) throws GenesetNotFoundException { - - return new ResponseEntity<>(genesetService.getGeneset(genesetId), HttpStatus.OK); - } - - @RequestMapping(value = "/genesets/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch gene sets by ID") - public ResponseEntity> fetchGenesets( - @ApiParam(required = true, value = "List of Gene set IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody List genesetIds) { - - return new ResponseEntity<>(genesetService.fetchGenesets(genesetIds), HttpStatus.OK); - } - - @RequestMapping(value = "/genesets/version", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get the geneset version") - public ResponseEntity getGenesetVersion() { - - return new ResponseEntity<>(genesetService.getGenesetVersion(), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/GenesetCorrelationController.java b/web/src/main/java/org/cbioportal/web/GenesetCorrelationController.java deleted file mode 100644 index 65ddee6e4b6..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenesetCorrelationController.java +++ /dev/null @@ -1,98 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.web; - -import java.util.List; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; - -import org.cbioportal.model.GenesetCorrelation; -import org.cbioportal.service.GenesetCorrelationService; -import org.cbioportal.service.exception.GenesetNotFoundException; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.service.exception.SampleListNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - -@InternalApi -@RestController -@Validated -@Api(tags = "Gene Set Correlation", description = " ") -public class GenesetCorrelationController { - - @Autowired - private GenesetCorrelationService genesetCorrelationService; - - @PreAuthorize("hasPermission(#geneticProfileId, 'GeneticProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/genesets/{genesetId}/expression-correlation/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get the genes in a gene set that have expression correlated to the gene set scores (calculated using Spearman's correlation)") - public ResponseEntity> fetchCorrelatedGenes( - @ApiParam(required = true, value = "Gene set ID, e.g. HINATA_NFKB_MATRIX.") - @PathVariable String genesetId, - @ApiParam(required = true, value = "Genetic Profile ID e.g. gbm_tcga_gsva_scores") - @RequestParam String geneticProfileId, - @ApiParam("Correlation threshold (for absolute correlation value, Spearman correlation)") - @Max(1) - @Min(0) - @RequestParam(defaultValue = "0.3") Double correlationThreshold, - @ApiParam(required = false, value = "Identifier of pre-defined sample list with samples to query, e.g. brca_tcga_all") - @RequestParam(required = false) String sampleListId, - @ApiParam(required = false, value = "Fill this one if you want to specify a subset of samples:" - + " sampleIds: custom list of samples or patients to query, e.g. [\"TCGA-A1-A0SD-01\", \"TCGA-A1-A0SE-01\"]") - @RequestBody(required = false) List sampleIds) - throws MolecularProfileNotFoundException, SampleListNotFoundException, GenesetNotFoundException { - - if (sampleListId != null && sampleListId.trim().length() > 0) { - return new ResponseEntity<>( - genesetCorrelationService.fetchCorrelatedGenes(genesetId, geneticProfileId, sampleListId, correlationThreshold.doubleValue()), - HttpStatus.OK); - } - if (sampleIds != null && sampleIds.size() > 0) { - return new ResponseEntity<>( - genesetCorrelationService.fetchCorrelatedGenes(genesetId, geneticProfileId, sampleIds, correlationThreshold.doubleValue()), - HttpStatus.OK); - } else { - return new ResponseEntity<>( - genesetCorrelationService.fetchCorrelatedGenes(genesetId, geneticProfileId, correlationThreshold.doubleValue()), - HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/GenesetDataController.java b/web/src/main/java/org/cbioportal/web/GenesetDataController.java deleted file mode 100644 index 41af427a615..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenesetDataController.java +++ /dev/null @@ -1,62 +0,0 @@ -package org.cbioportal.web; - -import java.util.List; - -import org.cbioportal.model.GenesetMolecularData; -import org.cbioportal.service.GenesetDataService; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.service.exception.SampleListNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.GenesetDataFilterCriteria; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - -@InternalApi -@RestController -@Validated -@Api(tags = "Gene Set Scores", description = " ") -public class GenesetDataController { - - - @Autowired - private GenesetDataService genesetDataService; - - @PreAuthorize("hasPermission(#geneticProfileId, 'GeneticProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/genetic-profiles/{geneticProfileId}/geneset-genetic-data/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch gene set \"genetic data\" items (gene set scores) by profile Id, gene set ids and sample ids") - public ResponseEntity> fetchGeneticDataItems( - @ApiParam(required = true, value = "Genetic profile ID, e.g. gbm_tcga_gsva_scores") - @PathVariable String geneticProfileId, - @ApiParam(required = true, value = "Search criteria to return the values for a given set of samples and gene set items. " - + "genesetIds: The list of identifiers for the gene sets of interest, e.g. HINATA_NFKB_MATRIX. " - + "Use one of these if you want to specify a subset of samples:" - + "(1) sampleListId: Identifier of pre-defined sample list with samples to query, e.g. brca_tcga_all " - + "or (2) sampleIds: custom list of samples or patients to query, e.g. TCGA-BH-A1EO-01, TCGA-AR-A1AR-01") - @RequestBody GenesetDataFilterCriteria genesetDataFilterCriteria) throws MolecularProfileNotFoundException, SampleListNotFoundException { - - if (genesetDataFilterCriteria.getSampleListId() != null && genesetDataFilterCriteria.getSampleListId().trim().length() > 0) { - return new ResponseEntity<>( - genesetDataService.fetchGenesetData(geneticProfileId, genesetDataFilterCriteria.getSampleListId(), - genesetDataFilterCriteria.getGenesetIds()), HttpStatus.OK); - } else { - return new ResponseEntity<>( - genesetDataService.fetchGenesetData(geneticProfileId, genesetDataFilterCriteria.getSampleIds(), - genesetDataFilterCriteria.getGenesetIds()), HttpStatus.OK); - } - } - -} diff --git a/web/src/main/java/org/cbioportal/web/GenesetHierarchyController.java b/web/src/main/java/org/cbioportal/web/GenesetHierarchyController.java deleted file mode 100644 index 40ec5883a9b..00000000000 --- a/web/src/main/java/org/cbioportal/web/GenesetHierarchyController.java +++ /dev/null @@ -1,103 +0,0 @@ -/* - * Copyright (c) 2016 The Hyve B.V. - * This code is licensed under the GNU Affero General Public License (AGPL), - * version 3, or (at your option) any later version. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.web; - -import java.util.List; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; - -import org.cbioportal.model.GenesetHierarchyInfo; -import org.cbioportal.service.GenesetHierarchyService; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.service.exception.SampleListNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - -@InternalApi -@RestController -@Validated -@Api(tags = "Gene Set Hierarchy", description = " ") -public class GenesetHierarchyController { - - @Autowired - private GenesetHierarchyService genesetHierarchyService; - - @PreAuthorize("hasPermission(#geneticProfileId, 'GeneticProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/geneset-hierarchy/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get gene set hierarchical organization information. I.e. how different gene sets relate to other gene sets, in a hierarchy") - public ResponseEntity> fetchGenesetHierarchyInfo( - @ApiParam(required = true, value = "Genetic Profile ID e.g. gbm_tcga_gsva_scores. The final hierarchy " - + " will only include gene sets scored in the specified profile.") - @RequestParam String geneticProfileId, - @ApiParam("Percentile (for score calculation). Which percentile to use when determining the *representative score*") - @Max(100) - @Min(1) - @RequestParam(defaultValue = "75") Integer percentile, - @ApiParam("Gene set score threshold (for absolute score value). Filters out gene sets where the GSVA(like) *representative score* is under this threshold.") - @Max(1) - @Min(0) - @RequestParam(defaultValue = "0.4") Double scoreThreshold, - @ApiParam("p-value threshold. Filters out gene sets for which the score p-value is higher than this threshold.") - @Max(1) - @Min(0) - @RequestParam(defaultValue = "0.05") Double pvalueThreshold, - @ApiParam(required = false, value = "Identifier of pre-defined sample list with samples to query, e.g. brca_tcga_all") - @RequestParam(required = false) String sampleListId, - @ApiParam(required = false, value = "Fill this one if you want to specify a subset of samples:" - + " sampleIds: custom list of samples or patients to query, e.g. [\"TCGA-A1-A0SD-01\", \"TCGA-A1-A0SE-01\"]") - @RequestBody(required = false) List sampleIds) - throws MolecularProfileNotFoundException, SampleListNotFoundException { - - if (sampleListId != null && sampleListId.trim().length() > 0) { - return new ResponseEntity<>( - genesetHierarchyService.fetchGenesetHierarchyInfo(geneticProfileId, percentile, scoreThreshold, pvalueThreshold, sampleListId), - HttpStatus.OK); - } else if (sampleIds != null && sampleIds.size() > 0){ - return new ResponseEntity<>( - genesetHierarchyService.fetchGenesetHierarchyInfo(geneticProfileId, percentile, scoreThreshold, pvalueThreshold, sampleIds), - HttpStatus.OK); - } else { - return new ResponseEntity<>( - genesetHierarchyService.fetchGenesetHierarchyInfo(geneticProfileId, percentile, scoreThreshold, pvalueThreshold), - HttpStatus.OK); - } - - } -} diff --git a/web/src/main/java/org/cbioportal/web/MatchMinerController.java b/web/src/main/java/org/cbioportal/web/MatchMinerController.java deleted file mode 100644 index 874dfa4f6dd..00000000000 --- a/web/src/main/java/org/cbioportal/web/MatchMinerController.java +++ /dev/null @@ -1,67 +0,0 @@ -package org.cbioportal.web; - -import org.apache.commons.codec.binary.Base64; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.json.simple.JSONObject; -import org.json.simple.parser.JSONParser; -import org.json.simple.parser.ParseException; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.http.*; -import org.springframework.http.converter.StringHttpMessageConverter; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.web.client.RestTemplate; - -import javax.servlet.http.HttpServletRequest; -import java.net.URI; -import java.net.URISyntaxException; -import java.nio.charset.Charset; -import java.nio.charset.StandardCharsets; - -@RestController -@RequestMapping("/matchminer") -public class MatchMinerController { - - private static final Logger LOG = LoggerFactory.getLogger( MatchMinerController.class); - - @Value("${matchminer.url:}") - private String url; - - @Value("${matchminer.token:}") - private String token; - - @RequestMapping(value = "/**", produces = "application/json") - public ResponseEntity proxy(@RequestBody(required = false) JSONObject body, HttpMethod method, HttpServletRequest request) { - try { - String path = request.getPathInfo().replace("/matchminer", ""); - URI uri = new URI(this.url + path); - - HttpHeaders httpHeaders = new HttpHeaders(); - String contentType = request.getHeader("Content-Type"); - if (contentType != null) { - httpHeaders.setContentType(MediaType.valueOf(contentType)); - } - if (this.token != "") { - String auth = this.token + ":"; - byte[] encodedAuth = Base64.encodeBase64(auth.getBytes(Charset.forName("US-ASCII"))); - String authHeader = "Basic " + new String(encodedAuth); - httpHeaders.set("Authorization", authHeader); - } - - RestTemplate restTemplate = new RestTemplate(); - restTemplate.getMessageConverters().add(0, new StringHttpMessageConverter(StandardCharsets.UTF_8)); - ResponseEntity responseEntity = restTemplate.exchange(uri, method, new HttpEntity<>(body, httpHeaders), String.class); - // The response might be a json object or a json array, so I return Object to cover both cases. - Object response = new JSONParser().parse(responseEntity.getBody()); - return new ResponseEntity<>(response, responseEntity.getStatusCode()); - } catch (URISyntaxException e) { - LOG.error("Error occurred", e); - return new ResponseEntity<>(HttpStatus.BAD_REQUEST); - } catch (ParseException e) { - LOG.error("Error occurred", e); - return new ResponseEntity<>(HttpStatus.INTERNAL_SERVER_ERROR); - } - } -} \ No newline at end of file diff --git a/web/src/main/java/org/cbioportal/web/MolecularProfileController.java b/web/src/main/java/org/cbioportal/web/MolecularProfileController.java deleted file mode 100644 index 2474b2a060d..00000000000 --- a/web/src/main/java/org/cbioportal/web/MolecularProfileController.java +++ /dev/null @@ -1,162 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.meta.BaseMeta; -import org.cbioportal.model.MolecularProfile; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.service.MolecularProfileService; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.MolecularProfileFilter; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.MolecularProfileSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.Valid; -import java.util.*; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.MOLECULAR_PROFILES, description = " ") -public class MolecularProfileController { - - @Autowired - private MolecularProfileService molecularProfileService; - - @RequestMapping(value = "/molecular-profiles", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all molecular profiles") - public ResponseEntity> getAllMolecularProfiles( - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) MolecularProfileSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, molecularProfileService.getMetaMolecularProfiles() - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - molecularProfileService.getAllMolecularProfiles(projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/{molecularProfileId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get molecular profile") - public ResponseEntity getMolecularProfile( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_mutations") - @PathVariable String molecularProfileId) throws MolecularProfileNotFoundException { - - return new ResponseEntity<>(molecularProfileService.getMolecularProfile(molecularProfileId), HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/molecular-profiles", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all molecular profiles in a study") - public ResponseEntity> getAllMolecularProfilesInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) MolecularProfileSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, molecularProfileService - .getMetaMolecularProfilesInStudy(studyId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - molecularProfileService.getAllMolecularProfilesInStudy(studyId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch molecular profiles") - public ResponseEntity> fetchMolecularProfiles( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedMolecularProfileFilter") MolecularProfileFilter interceptedMolecularProfileFilter, - @ApiParam(required = true, value = "List of Molecular Profile IDs or List of Study IDs") - @Valid @RequestBody(required = false) MolecularProfileFilter molecularProfileFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - BaseMeta baseMeta; - - if (interceptedMolecularProfileFilter.getStudyIds() != null) { - baseMeta = molecularProfileService.getMetaMolecularProfilesInStudies( - interceptedMolecularProfileFilter.getStudyIds()); - } else { - baseMeta = molecularProfileService.getMetaMolecularProfiles( - interceptedMolecularProfileFilter.getMolecularProfileIds()); - } - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, baseMeta.getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - List molecularProfiles; - if (interceptedMolecularProfileFilter.getStudyIds() != null) { - molecularProfiles = molecularProfileService.getMolecularProfilesInStudies( - interceptedMolecularProfileFilter.getStudyIds(), projection.name()); - } else { - molecularProfiles = molecularProfileService.getMolecularProfiles( - interceptedMolecularProfileFilter.getMolecularProfileIds(), projection.name()); - } - return new ResponseEntity<>(molecularProfiles, HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/MrnaPercentileController.java b/web/src/main/java/org/cbioportal/web/MrnaPercentileController.java deleted file mode 100644 index ef445fdd833..00000000000 --- a/web/src/main/java/org/cbioportal/web/MrnaPercentileController.java +++ /dev/null @@ -1,54 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.MrnaPercentile; -import org.cbioportal.service.MrnaPercentileService; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.PagingConstants; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.constraints.Size; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "mRNA Percentile", description = " ") -public class MrnaPercentileController { - - @Autowired - private MrnaPercentileService mrnaPercentileService; - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/mrna-percentile/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get mRNA expression percentiles for list of genes for a sample") - public ResponseEntity> fetchMrnaPercentile( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_rna_seq_v2_mrna") - @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "Sample ID e.g. TCGA-OR-A5J2-01") - @RequestParam String sampleId, - @ApiParam(required = true, value = "List of Entrez Gene IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody List entrezGeneIds) - throws MolecularProfileNotFoundException { - - return new ResponseEntity<>( - mrnaPercentileService.fetchMrnaPercentile(molecularProfileId, sampleId, entrezGeneIds), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/MutationCountController.java b/web/src/main/java/org/cbioportal/web/MutationCountController.java deleted file mode 100644 index 9a087a9318e..00000000000 --- a/web/src/main/java/org/cbioportal/web/MutationCountController.java +++ /dev/null @@ -1,78 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.meta.MutationMeta; -import org.cbioportal.model.Mutation; -import org.cbioportal.model.MutationCountByPosition; -import org.cbioportal.service.MolecularProfileService; -import org.cbioportal.service.MutationService; -import org.cbioportal.web.config.InternalApiTags; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.MutationFilter; -import org.cbioportal.web.parameter.MutationMultipleStudyFilter; -import org.cbioportal.web.parameter.MutationPositionIdentifier; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.SampleMolecularIdentifier; -import org.cbioportal.web.parameter.sort.MutationSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import javax.validation.Valid; -import java.util.*; - -@InternalApi -@RestController -@Validated -@Api(tags = InternalApiTags.MUTATIONS_COUNT, description = " ") -public class MutationCountController { - - public static final int MUTATION_MAX_PAGE_SIZE = 10000000; - - @Autowired - private MutationService mutationService; - - @RequestMapping(value = "/mutation-counts-by-position/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch mutation counts in all studies by gene and position") - public ResponseEntity> fetchMutationCountsByPosition( - @ApiParam(required = true, value = "List of gene and positions") - @Size(min = 1, max = MUTATION_MAX_PAGE_SIZE) - @RequestBody List mutationPositionIdentifiers) { - - List entrezGeneIds = new ArrayList<>(); - List proteinPosStarts = new ArrayList<>(); - List proteinPosEnds = new ArrayList<>(); - for (MutationPositionIdentifier mutationPositionIdentifier : mutationPositionIdentifiers) { - - entrezGeneIds.add(mutationPositionIdentifier.getEntrezGeneId()); - proteinPosStarts.add(mutationPositionIdentifier.getProteinPosStart()); - proteinPosEnds.add(mutationPositionIdentifier.getProteinPosEnd()); - } - - return new ResponseEntity<>(mutationService.fetchMutationCountsByPosition(entrezGeneIds, proteinPosStarts, - proteinPosEnds), HttpStatus.OK); - } - - -} diff --git a/web/src/main/java/org/cbioportal/web/MutationSpectrumController.java b/web/src/main/java/org/cbioportal/web/MutationSpectrumController.java deleted file mode 100644 index e6e50f135ec..00000000000 --- a/web/src/main/java/org/cbioportal/web/MutationSpectrumController.java +++ /dev/null @@ -1,57 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.MutationSpectrum; -import org.cbioportal.service.MutationSpectrumService; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.MutationSpectrumFilter; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.Valid; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "Mutation Spectrums", description = " ") -public class MutationSpectrumController { - - @Autowired - private MutationSpectrumService mutationSpectrumService; - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/mutation-spectrums/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch mutation spectrums in a molecular profile") - public ResponseEntity> fetchMutationSpectrums( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_mutations") - @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "List of Sample IDs/Sample List ID") - @Valid @RequestBody MutationSpectrumFilter mutationSpectrumFilter) throws MolecularProfileNotFoundException { - - List mutationSpectrums; - if (mutationSpectrumFilter.getSampleListId() != null) { - mutationSpectrums = mutationSpectrumService.getMutationSpectrums(molecularProfileId, - mutationSpectrumFilter.getSampleListId()); - } else { - mutationSpectrums = mutationSpectrumService.fetchMutationSpectrums(molecularProfileId, - mutationSpectrumFilter.getSampleIds()); - } - - return new ResponseEntity<>(mutationSpectrums, HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/OAuth2DataAccessTokenController.java b/web/src/main/java/org/cbioportal/web/OAuth2DataAccessTokenController.java deleted file mode 100644 index 1b98a12abbc..00000000000 --- a/web/src/main/java/org/cbioportal/web/OAuth2DataAccessTokenController.java +++ /dev/null @@ -1,178 +0,0 @@ -/* - * Copyright (c) 2020 The Hyve B.V. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.apache.commons.lang3.StringUtils; -import org.cbioportal.model.DataAccessToken; -import org.cbioportal.service.DataAccessTokenService; -import org.cbioportal.service.exception.DataAccessTokenNoUserIdentityException; -import org.cbioportal.service.exception.DataAccessTokenProhibitedUserException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.core.Authentication; -import org.springframework.security.core.authority.SimpleGrantedAuthority; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; -import org.springframework.web.client.HttpClientErrorException; -import springfox.documentation.annotations.ApiIgnore; - -import javax.annotation.PostConstruct; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import java.io.IOException; -import java.io.UnsupportedEncodingException; -import java.net.URLEncoder; -import java.nio.charset.StandardCharsets; -import java.util.List; - -@InternalApi -@RequestMapping // replaces @RestController; controller is created conditionally in DataAccessTokenConfig of security-spring module -@ResponseBody // needed when not using @RestController annotation -@Validated -@Api(tags = "Data Access Tokens", description = " ") -public class OAuth2DataAccessTokenController { - - @Value("${dat.oauth2.userAuthorizationUri}") - private String userAuthorizationUri; - - @Value("${dat.oauth2.redirectUri}") - private String redirectUri; - - @Value("${dat.oauth2.clientId}") - private String clientId; - - @Value("${dat.filter_user_role:}") // default is empty string - private String userRoleToAccessToken; - - @Autowired - private DataAccessTokenService tokenService; - private String authorizationUrl; - private String fileName = "cbioportal_data_access_token.txt"; - - @PostConstruct - public void postConstruct() throws UnsupportedEncodingException { - - String scopeEncoded = URLEncoder.encode("openid offline_access", StandardCharsets.UTF_8.toString()); - String clientIdEncoded = URLEncoder.encode(clientId, StandardCharsets.UTF_8.toString()); - String redirUriEncode = URLEncoder.encode(redirectUri, StandardCharsets.UTF_8.toString()); - - authorizationUrl = String.format("%s?response_type=%s&scope=%s&client_id=%s&redirect_uri=%s", userAuthorizationUri, "code", scopeEncoded, clientIdEncoded, redirUriEncode); - } - - // This is the entrypoint for the cBioPortal frontend to download a single user token. - // Redirect the browser to the authorizationUrl. - @RequestMapping(method = RequestMethod.GET, value = "/data-access-token") - @ApiOperation("Create a new data access token") - public ResponseEntity downloadDataAccessToken(Authentication authentication, - HttpServletRequest request, HttpServletResponse response) throws IOException { - - isUserAuthorizedToAccess(authentication); - - // redirect to authentication endpoint - HttpHeaders headers = new HttpHeaders(); - headers.add("Location", authorizationUrl); - return new ResponseEntity<>(headers, HttpStatus.FOUND); - - } - - // retrieve and trigger download OAuth2 offline token - @RequestMapping(method = RequestMethod.GET, value = "/data-access-token/oauth2") - @ApiIgnore - public ResponseEntity downloadOAuth2DataAccessToken(HttpServletRequest request, HttpServletResponse response) throws IOException { - - String accessCode = request.getParameter("code"); - DataAccessToken offlineToken = tokenService.createDataAccessToken(accessCode); - - if (offlineToken == null) { - throw new DataAccessTokenProhibitedUserException(); - } - - // add header to trigger download of the token by the browser - response.setHeader("Content-Disposition", "attachment; filename=" + fileName); - - return new ResponseEntity<>(offlineToken.toString(), HttpStatus.OK); - } - - @RequestMapping(method = RequestMethod.POST, value = "/data-access-tokens", produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all data access tokens") - public ResponseEntity createDataAccessToken(Authentication authentication) throws HttpClientErrorException { - throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); - } - - @RequestMapping(method = RequestMethod.GET, value = "/data-access-tokens") - @ApiOperation("Retrieve all data access tokens") - public ResponseEntity> getAllDataAccessTokens(HttpServletRequest request, - Authentication authentication) { - throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); - } - - @RequestMapping(method = RequestMethod.GET, value = "/data-access-tokens/{token}") - @ApiOperation("Retrieve an existing data access token") - public ResponseEntity getDataAccessToken( - @ApiParam(required = true, value = "token") @PathVariable String token) { - throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); - - } - - @RequestMapping(method = RequestMethod.DELETE, value = "/data-access-tokens") - @ApiOperation("Delete all data access tokens") - public void revokeAllDataAccessTokens(Authentication authentication) { - throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); - } - - @RequestMapping(method = RequestMethod.DELETE, value = "/data-access-tokens/{token}") - @ApiOperation("Delete a data access token") - public void revokeDataAccessToken(@ApiParam(required = true, value = "token") @PathVariable String token) { - throw new UnsupportedOperationException("this endpoint is does not apply to OAuth2 data access token method."); - } - - private void isUserAuthorizedToAccess(Authentication authentication) { - if (authentication == null || !authentication.isAuthenticated()) { - throw new DataAccessTokenNoUserIdentityException(); - } - - if(StringUtils.isNotEmpty(userRoleToAccessToken) && - !authentication.getAuthorities().contains(new SimpleGrantedAuthority(userRoleToAccessToken))) { - throw new DataAccessTokenProhibitedUserException(); - } - } - -} diff --git a/web/src/main/java/org/cbioportal/web/PatientController.java b/web/src/main/java/org/cbioportal/web/PatientController.java deleted file mode 100644 index 84ec5585483..00000000000 --- a/web/src/main/java/org/cbioportal/web/PatientController.java +++ /dev/null @@ -1,171 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.Patient; -import org.cbioportal.service.exception.PatientNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.service.PatientService; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.*; -import org.cbioportal.web.parameter.sort.PatientSortBy; -import org.cbioportal.web.util.UniqueKeyExtractor; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.Valid; -import java.util.*; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.PATIENTS, description = " ") -public class PatientController { - - @Autowired - private PatientService patientService; - - @Autowired - private UniqueKeyExtractor uniqueKeyExtractor; - - @RequestMapping(value = "/patients", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all patients") - public ResponseEntity> getAllPatients( - @ApiParam("Search keyword that applies to ID of the patients") - @RequestParam(required = false) String keyword, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) PatientSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, patientService.getMetaPatients(keyword) - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - patientService.getAllPatients(keyword, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/patients", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all patients in a study") - public ResponseEntity> getAllPatientsInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) PatientSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, patientService.getMetaPatientsInStudy(studyId) - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - patientService.getAllPatientsInStudy(studyId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/patients/{patientId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get a patient in a study") - public ResponseEntity getPatientInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Patient ID e.g. TCGA-OR-A5J2") - @PathVariable String patientId) throws PatientNotFoundException, StudyNotFoundException { - - return new ResponseEntity<>(patientService.getPatientInStudy(studyId, patientId), HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/patients/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - public ResponseEntity> fetchPatients( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedPatientFilter") PatientFilter interceptedPatientFilter, - @ApiParam(required = true, value = "List of patient identifiers") - @Valid @RequestBody(required = false) PatientFilter patientFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - List studyIds = new ArrayList<>(); - List patientIds = new ArrayList<>(); - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - if (interceptedPatientFilter.getPatientIdentifiers() != null) { - extractStudyAndPatientIds(interceptedPatientFilter, studyIds, patientIds); - } else { - uniqueKeyExtractor.extractUniqueKeys(interceptedPatientFilter.getUniquePatientKeys(), studyIds, patientIds); - } - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, patientService.fetchMetaPatients(studyIds, patientIds) - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - if (interceptedPatientFilter.getPatientIdentifiers() != null) { - extractStudyAndPatientIds(interceptedPatientFilter, studyIds, patientIds); - } else { - uniqueKeyExtractor.extractUniqueKeys(interceptedPatientFilter.getUniquePatientKeys(), studyIds, patientIds); - } - //TODO: since we are already extracting the studyIds in the interceptor, we might not need to use the service here - return new ResponseEntity<>( - patientService.fetchPatients(studyIds, patientIds, projection.name()), HttpStatus.OK); - } - } - - private void extractStudyAndPatientIds(PatientFilter patientFilter, List studyIds, List patientIds) { - - for (PatientIdentifier patientIdentifier : patientFilter.getPatientIdentifiers()) { - studyIds.add(patientIdentifier.getStudyId()); - patientIds.add(patientIdentifier.getPatientId()); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/ReferenceGenomeGeneController.java b/web/src/main/java/org/cbioportal/web/ReferenceGenomeGeneController.java deleted file mode 100644 index b2ae8d04ab6..00000000000 --- a/web/src/main/java/org/cbioportal/web/ReferenceGenomeGeneController.java +++ /dev/null @@ -1,105 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.ReferenceGenomeGene; -import org.cbioportal.service.GeneMemoizerService; -import org.cbioportal.service.ReferenceGenomeGeneService; -import org.cbioportal.service.StaticDataTimestampService; -import org.cbioportal.service.exception.GeneNotFoundException; -import org.cbioportal.web.config.InternalApiTags; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; - -import javax.validation.constraints.Size; -import java.text.ParseException; -import java.text.SimpleDateFormat; -import java.util.*; -import java.util.stream.Collectors; - -@InternalApi -@RestController -@Validated -@Api(tags = InternalApiTags.REFERENCE_GENOME_GENES, description = " ") -public class ReferenceGenomeGeneController { - private static final int GENE_MAX_PAGE_SIZE = 100000; - private static final String GENE_DEFAULT_PAGE_SIZE = "100000"; - - @Autowired - private ReferenceGenomeGeneService referenceGenomeGeneService; - - @Autowired - private GeneMemoizerService geneMemoizerService; - - /** - * The memoization logic in this method is a temporary fix to make this work until - * Ehcache is working correctly on cbioportal.org. - * This endpoint creates a large response and seems to bloat the webserver's heap - * size, leading to poor performance and crashes. The caching seems to improve - * processor load, heap size and response time. - */ - @RequestMapping(value = "/reference-genome-genes/{genomeName}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all reference genes") - public ResponseEntity> getAllReferenceGenomeGenes( - @ApiParam(required = true, value = "Name of Reference Genome hg19") - @PathVariable String genomeName) { - - List genes = geneMemoizerService.fetchGenes(genomeName); - if (genes == null) { - genes = referenceGenomeGeneService.fetchAllReferenceGenomeGenes(genomeName); - geneMemoizerService.cacheGenes(genes, genomeName); - } - return new ResponseEntity<>(genes, HttpStatus.OK); - } - - @RequestMapping(value = "/reference-genome-genes/{genomeName}/{geneId}", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get a gene of a reference genome of interest") - public ResponseEntity getReferenceGenomeGene( - @ApiParam(required = true, value = "Name of Reference Genome hg19") - @PathVariable String genomeName, - @ApiParam(required = true, value = "Entrez Gene ID 207") - @PathVariable Integer geneId) throws GeneNotFoundException { - - return new ResponseEntity<>(referenceGenomeGeneService.getReferenceGenomeGene(geneId, genomeName), HttpStatus.OK); - } - - @RequestMapping(value = "/reference-genome-genes/{genomeName}/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch genes of reference genome of interest") - public ResponseEntity> fetchReferenceGenomeGenes( - @ApiParam(required = true, value = "Name of Reference Genome hg19") - @PathVariable String genomeName, - @ApiParam(required = true, value = "List of Entrez Gene IDs") - @Size(min = 1, max = GENE_MAX_PAGE_SIZE) - @RequestBody List geneIds) { - - if (isInteger(geneIds.get(0))) { - List newIds = geneIds.stream().map(s -> Integer.parseInt(s)).collect(Collectors.toList()); - return new ResponseEntity<>(referenceGenomeGeneService.fetchGenesByGenomeName(newIds, genomeName), HttpStatus.OK); - } else { - return new ResponseEntity<>(referenceGenomeGeneService.fetchGenesByHugoGeneSymbolsAndGenomeName( - geneIds, genomeName), HttpStatus.OK); - } - } - - private boolean isInteger(String s) { - try { - Integer.parseInt(s); - } catch(NumberFormatException | NullPointerException e) { - return false; - } - return true; - } -} - diff --git a/web/src/main/java/org/cbioportal/web/ResourceDataController.java b/web/src/main/java/org/cbioportal/web/ResourceDataController.java deleted file mode 100644 index 0ccd72b9b1f..00000000000 --- a/web/src/main/java/org/cbioportal/web/ResourceDataController.java +++ /dev/null @@ -1,145 +0,0 @@ -package org.cbioportal.web; - -import java.util.List; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; - -import org.cbioportal.model.ResourceData; -import org.cbioportal.service.ResourceDataService; -import org.cbioportal.service.exception.PatientNotFoundException; -import org.cbioportal.service.exception.SampleNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.InternalApiTags; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.ResourceDataSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.*; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - -@InternalApi -@RestController -@Validated -@Api(tags = InternalApiTags.RESOURCE_DATA, description = " ") -public class ResourceDataController { - - public static final int RESOURCE_DATA_MAX_PAGE_SIZE = 10000000; - private static final String RESOURCE_DATA_DEFAULT_PAGE_SIZE = "10000000"; - - @Autowired - private ResourceDataService resourceDataService; - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}/resource-data", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all resource data of a sample in a study") - public ResponseEntity> getAllResourceDataOfSampleInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Sample ID e.g. TCGA-OR-A5J2-01") - @PathVariable String sampleId, - @ApiParam("Resource ID") - @RequestParam(required = false) String resourceId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(RESOURCE_DATA_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = RESOURCE_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ResourceDataSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws SampleNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - throw new UnsupportedOperationException("Requested API is not implemented yet"); - } else { - return new ResponseEntity<>( - resourceDataService.getAllResourceDataOfSampleInStudy( - studyId, sampleId, resourceId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/resource-data", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all resource data of a patient in a study") - public ResponseEntity> getAllResourceDataOfPatientInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Patient ID e.g. TCGA-OR-A5J2") - @PathVariable String patientId, - @ApiParam("Resource ID") - @RequestParam(required = false) String resourceId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(RESOURCE_DATA_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = RESOURCE_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ResourceDataSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - throw new UnsupportedOperationException("Requested API is not implemented yet"); - } else { - return new ResponseEntity<>( - resourceDataService.getAllResourceDataOfPatientInStudy( - studyId, patientId, resourceId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/resource-data", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all resource data for a study") - public ResponseEntity> getAllStudyResourceDataInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Resource ID") - @RequestParam(required = false) String resourceId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(RESOURCE_DATA_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = RESOURCE_DATA_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ResourceDataSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - throw new UnsupportedOperationException("Requested API is not implemented yet"); - } else { - return new ResponseEntity<>( - resourceDataService.getAllResourceDataForStudy(studyId, resourceId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - -} diff --git a/web/src/main/java/org/cbioportal/web/ResourceDefinitionController.java b/web/src/main/java/org/cbioportal/web/ResourceDefinitionController.java deleted file mode 100644 index 372202aa77d..00000000000 --- a/web/src/main/java/org/cbioportal/web/ResourceDefinitionController.java +++ /dev/null @@ -1,96 +0,0 @@ -package org.cbioportal.web; - -import java.util.List; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; - -import org.cbioportal.model.ResourceDefinition; -import org.cbioportal.service.ResourceDefinitionService; -import org.cbioportal.service.exception.ResourceDefinitionNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.InternalApiTags; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.*; -import org.cbioportal.web.parameter.sort.ResourceDefinitionSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.*; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - -@InternalApi -@RestController -@Validated -@Api(tags = InternalApiTags.RESOURCE_DEFINITIONS, description = " ") -public class ResourceDefinitionController { - - @Autowired - private ResourceDefinitionService resourceDefinitionService; - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/resource-definitions", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all resource definitions in the specified study") - public ResponseEntity> getAllResourceDefinitionsInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) ResourceDefinitionSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - throw new UnsupportedOperationException("Requested API is not implemented yet"); - } else { - return new ResponseEntity<>( - resourceDefinitionService.getAllResourceDefinitionsInStudy(studyId, projection.name(), pageSize, - pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), - HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/resource-definitions/{resourceId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get specified resource definition") - public ResponseEntity getResourceDefinitionInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value= "Resource ID") - @PathVariable String resourceId) - throws StudyNotFoundException, ResourceDefinitionNotFoundException { - - return new ResponseEntity<>(resourceDefinitionService.getResourceDefinition(studyId, resourceId), - HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/resource-definitions/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all resource definitions for specified studies") - public ResponseEntity> fetchResourceDefinitions( - @ApiParam(required = true, value = "List of Study IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody List studyIds, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws StudyNotFoundException { - - return new ResponseEntity<>(resourceDefinitionService.fetchResourceDefinitions(studyIds, projection.name()), - HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/SampleController.java b/web/src/main/java/org/cbioportal/web/SampleController.java deleted file mode 100644 index d34d1e1abc5..00000000000 --- a/web/src/main/java/org/cbioportal/web/SampleController.java +++ /dev/null @@ -1,288 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.CancerStudy; -import org.cbioportal.model.SampleList; -import org.cbioportal.model.meta.BaseMeta; -import org.cbioportal.model.Sample; -import org.cbioportal.service.SampleListService; -import org.cbioportal.service.StudyService; -import org.cbioportal.service.exception.PatientNotFoundException; -import org.cbioportal.service.exception.SampleListNotFoundException; -import org.cbioportal.service.exception.SampleNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.service.SampleService; -import org.cbioportal.utils.security.AccessLevel; -import org.cbioportal.utils.security.PortalSecurityConfig; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.*; -import org.cbioportal.web.parameter.sort.SampleSortBy; -import org.cbioportal.web.util.UniqueKeyExtractor; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.Valid; -import java.util.*; -import java.util.stream.Collectors; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.SAMPLES, description = " ") -public class SampleController { - - public static final int SAMPLE_MAX_PAGE_SIZE = 10000000; - private static final String SAMPLE_DEFAULT_PAGE_SIZE = "10000000"; - - @Value("${authenticate}") - private String authenticate; - - @Autowired - private SampleService sampleService; - - @Autowired - private SampleListService sampleListService; - - @Autowired - private StudyService studyService; - - @Autowired - private UniqueKeyExtractor uniqueKeyExtractor; - - @RequestMapping(value = "/samples", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all samples matching keyword") - public ResponseEntity> getSamplesByKeyword( - @ApiParam("Search keyword that applies to the study ID") - @RequestParam(required = false) String keyword, - - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) SampleSortBy sortBy, - - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction - ) { - String sort = sortBy == null ? null : sortBy.getOriginalValue(); - List studyIds = null; - if (PortalSecurityConfig.userAuthorizationEnabled(authenticate)) { - /* - If using auth, filter the list of samples returned using the list of study ids the - user has access to. If the user has access to no studies, the endpoint should not 403, - but instead return an empty list. - */ - studyIds = studyService - .getAllStudies( - null, - Projection.SUMMARY.name(), // force to summary so that post filter doesn't NPE - PagingConstants.MAX_PAGE_SIZE, - 0, - null, - direction.name(), - null, - AccessLevel.READ - ) - .stream() - .map(CancerStudy::getCancerStudyIdentifier) - .collect(Collectors.toList()); - } - - if (projection == Projection.META) { - HttpHeaders httpHeaders = new HttpHeaders(); - httpHeaders.add( - HeaderKeyConstants.TOTAL_COUNT, - sampleService.getMetaSamples(keyword, studyIds).getTotalCount().toString()); - return new ResponseEntity<>(httpHeaders, HttpStatus.OK); - } - return new ResponseEntity<>( - sampleService.getAllSamples(keyword, studyIds, projection.name(), pageSize, pageNumber, sort, direction.name()), - HttpStatus.OK - ); - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/samples", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all samples in a study") - public ResponseEntity> getAllSamplesInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(SAMPLE_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = SAMPLE_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) SampleSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, sampleService.getMetaSamplesInStudy(studyId) - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - sampleService.getAllSamplesInStudy(studyId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/samples/{sampleId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get a sample in a study") - public ResponseEntity getSampleInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Sample ID e.g. TCGA-OR-A5J2-01") - @PathVariable String sampleId) throws SampleNotFoundException, StudyNotFoundException { - - return new ResponseEntity<>(sampleService.getSampleInStudy(studyId, sampleId), HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/patients/{patientId}/samples", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all samples of a patient in a study") - public ResponseEntity> getAllSamplesOfPatientInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam(required = true, value = "Patient ID e.g. TCGA-OR-A5J2") - @PathVariable String patientId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(SAMPLE_MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = SAMPLE_DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) SampleSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws PatientNotFoundException, - StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, - sampleService.getMetaSamplesOfPatientInStudy(studyId, patientId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - sampleService.getAllSamplesOfPatientInStudy(studyId, patientId, projection.name(), pageSize, - pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/samples/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch samples by ID") - public ResponseEntity> fetchSamples( - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedSampleFilter") SampleFilter interceptedSampleFilter, - @ApiParam(required = true, value = "List of sample identifiers") - @Valid @RequestBody(required = false) SampleFilter sampleFilter, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) throws SampleListNotFoundException { - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - BaseMeta baseMeta; - - if (interceptedSampleFilter.getSampleListIds() != null) { - baseMeta = sampleService.fetchMetaSamples(interceptedSampleFilter.getSampleListIds()); - } else { - if (interceptedSampleFilter.getSampleIdentifiers() != null) { - extractStudyAndSampleIds(interceptedSampleFilter, studyIds, sampleIds); - } else { - uniqueKeyExtractor.extractUniqueKeys(interceptedSampleFilter.getUniqueSampleKeys(), studyIds, sampleIds); - } - baseMeta = sampleService.fetchMetaSamples(studyIds, sampleIds); - } - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, baseMeta.getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - List samples; - if (interceptedSampleFilter.getSampleListIds() != null) { - List sampleListIds = interceptedSampleFilter.getSampleListIds(); - - samples = new ArrayList(); - - for (String sampleListId : sampleListIds) { - // check that all sample lists exist (this method throws an exception if one does not) - sampleListService.getSampleList(sampleListId); - } - - for (String sampleListId : sampleListIds) { - // fetch by sampleId so that we get cache at level of id instead list of ids - samples.addAll( - sampleService.fetchSamples(Arrays.asList(sampleListId), projection.name()) - ); - } - - //samples = sampleService.fetchSamples(sampleListIds, projection.name()); - - } else { - if (interceptedSampleFilter.getSampleIdentifiers() != null) { - extractStudyAndSampleIds(interceptedSampleFilter, studyIds, sampleIds); - } else { - uniqueKeyExtractor.extractUniqueKeys(interceptedSampleFilter.getUniqueSampleKeys(), studyIds, sampleIds); - } - samples = sampleService.fetchSamples(studyIds, sampleIds, projection.name()); - } - - return new ResponseEntity<>(samples, HttpStatus.OK); - } - } - - private void extractStudyAndSampleIds(SampleFilter sampleFilter, List studyIds, List sampleIds) { - - for (SampleIdentifier sampleIdentifier : sampleFilter.getSampleIdentifiers()) { - studyIds.add(sampleIdentifier.getStudyId()); - sampleIds.add(sampleIdentifier.getSampleId()); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/SampleListController.java b/web/src/main/java/org/cbioportal/web/SampleListController.java deleted file mode 100644 index 92d4807eec6..00000000000 --- a/web/src/main/java/org/cbioportal/web/SampleListController.java +++ /dev/null @@ -1,143 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.SampleList; -import org.cbioportal.service.SampleListService; -import org.cbioportal.service.exception.SampleListNotFoundException; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.PublicApiTags; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.SampleListSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import javax.validation.constraints.Size; -import java.util.List; - -@PublicApi -@RestController -@Validated -@Api(tags = PublicApiTags.SAMPLE_LISTS, description = " ") -public class SampleListController { - - @Autowired - private SampleListService sampleListService; - - @RequestMapping(value = "/sample-lists", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all sample lists") - public ResponseEntity> getAllSampleLists( - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) SampleListSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, sampleListService.getMetaSampleLists() - .getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - sampleListService.getAllSampleLists(projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#sampleListId, 'SampleListId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/sample-lists/{sampleListId}", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get sample list") - public ResponseEntity getSampleList( - @ApiParam(required = true, value = "Sample List ID e.g. acc_tcga_all") - @PathVariable String sampleListId) throws SampleListNotFoundException { - - return new ResponseEntity<>(sampleListService.getSampleList(sampleListId), HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/sample-lists", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all sample lists in a study") - public ResponseEntity> getAllSampleListsInStudy( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) SampleListSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, sampleListService - .getMetaSampleListsInStudy(studyId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - sampleListService.getAllSampleListsInStudy(studyId, projection.name(), pageSize, pageNumber, - sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } - - @PreAuthorize("hasPermission(#sampleListId, 'SampleListId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/sample-lists/{sampleListId}/sample-ids", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all sample IDs in a sample list") - public ResponseEntity> getAllSampleIdsInSampleList( - @ApiParam(required = true, value = "Sample List ID e.g. acc_tcga_all") - @PathVariable String sampleListId) throws SampleListNotFoundException { - - return new ResponseEntity<>(sampleListService.getAllSampleIdsInSampleList(sampleListId), HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#sampleListIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/sample-lists/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch sample lists by ID") - public ResponseEntity> fetchSampleLists( - @ApiParam(required = true, value = "List of sample list IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody List sampleListIds, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection) { - - return new ResponseEntity<>(sampleListService.fetchSampleLists(sampleListIds, projection.name()), HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/ServerStatusController.java b/web/src/main/java/org/cbioportal/web/ServerStatusController.java deleted file mode 100644 index 6a24a017581..00000000000 --- a/web/src/main/java/org/cbioportal/web/ServerStatusController.java +++ /dev/null @@ -1,34 +0,0 @@ -package org.cbioportal.web; - -import org.cbioportal.service.ServerStatusService; -import org.cbioportal.service.impl.ServerStatusServiceImpl.ServerStatusMessage; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.config.annotation.PublicApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; - -@PublicApi -@RestController -@Validated -@Api(tags = "Server running status", description = "This end point does not require authentication") -public class ServerStatusController { - - @Autowired - private ServerStatusService serverStatusService; - - @RequestMapping(value = "/health", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get the running status of the server") - public ResponseEntity getServerStatus() { - return new ResponseEntity<>(serverStatusService.getServerStatus(), HttpStatus.OK); - } - -} diff --git a/web/src/main/java/org/cbioportal/web/SignificantCopyNumberRegionController.java b/web/src/main/java/org/cbioportal/web/SignificantCopyNumberRegionController.java deleted file mode 100644 index b5d55648da4..00000000000 --- a/web/src/main/java/org/cbioportal/web/SignificantCopyNumberRegionController.java +++ /dev/null @@ -1,74 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.Gistic; -import org.cbioportal.service.SignificantCopyNumberRegionService; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.SignificantCopyNumberRegionSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "Significant Copy Number Regions", description = " ") -public class SignificantCopyNumberRegionController { - - @Autowired - private SignificantCopyNumberRegionService significantCopyNumberRegionService; - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/significant-copy-number-regions", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get significant copy number alteration regions in a study") - public ResponseEntity> getSignificantCopyNumberRegions( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) SignificantCopyNumberRegionSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, - significantCopyNumberRegionService.getMetaSignificantCopyNumberRegions(studyId).getTotalCount() - .toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - significantCopyNumberRegionService.getSignificantCopyNumberRegions(studyId, projection.name(), pageSize, - pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/SignificantlyMutatedGenesController.java b/web/src/main/java/org/cbioportal/web/SignificantlyMutatedGenesController.java deleted file mode 100644 index bdae59293e1..00000000000 --- a/web/src/main/java/org/cbioportal/web/SignificantlyMutatedGenesController.java +++ /dev/null @@ -1,73 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.MutSig; -import org.cbioportal.service.SignificantlyMutatedGeneService; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.Direction; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.PagingConstants; -import org.cbioportal.web.parameter.Projection; -import org.cbioportal.web.parameter.sort.SignificantlyMutatedGeneSortBy; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "Significantly Mutated Genes", description = " ") -public class SignificantlyMutatedGenesController { - - @Autowired - private SignificantlyMutatedGeneService significantlyMutatedGeneService; - - @PreAuthorize("hasPermission(#studyId, 'CancerStudyId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/studies/{studyId}/significantly-mutated-genes", method = RequestMethod.GET, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get significantly mutated genes in a study") - public ResponseEntity> getSignificantlyMutatedGenes( - @ApiParam(required = true, value = "Study ID e.g. acc_tcga") - @PathVariable String studyId, - @ApiParam("Level of detail of the response") - @RequestParam(defaultValue = "SUMMARY") Projection projection, - @ApiParam("Page size of the result list") - @Max(PagingConstants.MAX_PAGE_SIZE) - @Min(PagingConstants.MIN_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_SIZE) Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) Integer pageNumber, - @ApiParam("Name of the property that the result list is sorted by") - @RequestParam(required = false) SignificantlyMutatedGeneSortBy sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") Direction direction) throws StudyNotFoundException { - - if (projection == Projection.META) { - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, - significantlyMutatedGeneService.getMetaSignificantlyMutatedGenes(studyId).getTotalCount().toString()); - return new ResponseEntity<>(responseHeaders, HttpStatus.OK); - } else { - return new ResponseEntity<>( - significantlyMutatedGeneService.getSignificantlyMutatedGenes(studyId, projection.name(), pageSize, - pageNumber, sortBy == null ? null : sortBy.getOriginalValue(), direction.name()), HttpStatus.OK); - } - } -} diff --git a/web/src/main/java/org/cbioportal/web/StaticDataTimestampController.java b/web/src/main/java/org/cbioportal/web/StaticDataTimestampController.java deleted file mode 100644 index d8b0fa68667..00000000000 --- a/web/src/main/java/org/cbioportal/web/StaticDataTimestampController.java +++ /dev/null @@ -1,33 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import org.cbioportal.service.StaticDataTimestampService; -import org.cbioportal.web.config.annotation.InternalApi; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; - -import java.util.*; - -@InternalApi -@RestController -@Validated -@Api(tags = "Timestamps", description = " ") -public class StaticDataTimestampController { - public static final List TIMESTAMP_TABLES = Arrays.asList("gene", "reference_genome_gene"); - @Autowired - private StaticDataTimestampService service; - - @RequestMapping(value = "/timestamps", method = RequestMethod.GET, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get the last time each static resource was updated") - public ResponseEntity> getAllTimestamps() { - return new ResponseEntity<>(service.getTimestamps(TIMESTAMP_TABLES), HttpStatus.OK); - } - -} diff --git a/web/src/main/java/org/cbioportal/web/StudyViewController.java b/web/src/main/java/org/cbioportal/web/StudyViewController.java deleted file mode 100644 index f4ca464cf50..00000000000 --- a/web/src/main/java/org/cbioportal/web/StudyViewController.java +++ /dev/null @@ -1,1078 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; - -import org.apache.commons.collections4.CollectionUtils; -import org.apache.commons.lang3.math.NumberUtils; -import org.apache.commons.lang3.tuple.ImmutablePair; -import org.apache.commons.math3.stat.correlation.PearsonsCorrelation; -import org.apache.commons.math3.stat.correlation.SpearmansCorrelation; -import org.apache.commons.math3.util.Pair; -import org.cbioportal.model.*; -import org.cbioportal.service.*; -import org.cbioportal.service.exception.StudyNotFoundException; -import org.cbioportal.service.util.ClinicalAttributeUtil; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.model.AlterationFilter; -import org.cbioportal.web.parameter.*; -import org.cbioportal.web.util.*; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.context.ApplicationContext; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PostMapping; -import org.springframework.web.bind.annotation.RequestAttribute; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.RestController; -import springfox.documentation.annotations.ApiIgnore; - -import javax.annotation.PostConstruct; -import javax.validation.Valid; -import javax.validation.constraints.Max; -import javax.validation.constraints.Min; -import java.math.BigDecimal; -import java.util.*; -import java.util.function.Function; -import java.util.stream.Collectors; - -@InternalApi -@RestController -@Validated -@Api(tags = "Study View", description = " ") -public class StudyViewController { - - public static final int CLINICAL_TAB_MAX_PAGE_SIZE = 1000000; - - @Autowired - private ApplicationContext applicationContext; - StudyViewController instance; - @PostConstruct - private void init() { - instance = applicationContext.getBean(StudyViewController.class); - } - - @Autowired - private StudyViewFilterApplier studyViewFilterApplier; - @Autowired - private ClinicalDataService clinicalDataService; - @Autowired - private ClinicalDataFetcher clinicalDataFetcher; - @Autowired - private SampleService sampleService; - @Autowired - private PatientService patientService; - @Autowired - private StudyViewFilterUtil studyViewFilterUtil; - @Autowired - private ClinicalAttributeService clinicalAttributeService; - @Autowired - private ViolinPlotService violinPlotService; - @Autowired - private ClinicalAttributeUtil clinicalAttributeUtil; - @Autowired - private SampleListService sampleListService; - @Autowired - private StudyViewService studyViewService; - @Autowired - private ClinicalDataBinUtil clinicalDataBinUtil; - @Autowired - private ClinicalEventService clinicalEventService; - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-data-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical data counts by study view filter") - public ResponseEntity> fetchClinicalDataCounts( - @ApiParam(required = true, value = "Clinical data count filter") - @Valid @RequestBody(required = false) ClinicalDataCountFilter clinicalDataCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataCountFilter") ClinicalDataCountFilter interceptedClinicalDataCountFilter) { - - List attributes = interceptedClinicalDataCountFilter.getAttributes(); - StudyViewFilter studyViewFilter = interceptedClinicalDataCountFilter.getStudyViewFilter(); - - if (attributes.size() == 1) { - studyViewFilterUtil.removeSelfFromFilter(attributes.get(0).getAttributeId(), studyViewFilter); - } - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(studyViewFilter); - List result = - instance.cachedClinicalDataCounts(interceptedClinicalDataCountFilter,singleStudyUnfiltered); - return new ResponseEntity<>(result, HttpStatus.OK); - - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cachedClinicalDataCounts( - ClinicalDataCountFilter interceptedClinicalDataCountFilter, boolean singleStudyUnfiltered - ) { - List attributes = interceptedClinicalDataCountFilter.getAttributes(); - StudyViewFilter studyViewFilter = interceptedClinicalDataCountFilter.getStudyViewFilter(); - if (attributes.size() == 1) { - studyViewFilterUtil.removeSelfFromFilter(attributes.get(0).getAttributeId(), studyViewFilter); - } - List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); - - if (filteredSampleIdentifiers.isEmpty()) { - return new ArrayList<>(); - } - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); - - List result = clinicalDataService.fetchClinicalDataCounts( - studyIds, sampleIds, attributes.stream().map(a -> a.getAttributeId()).collect(Collectors.toList())); - - return result; - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-data-bin-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical data bin counts by study view filter") - public ResponseEntity> fetchClinicalDataBinCounts( - @ApiParam("Method for data binning") - @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, - @ApiParam(required = true, value = "Clinical data bin count filter") - @Valid @RequestBody(required = false) ClinicalDataBinCountFilter clinicalDataBinCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataBinCountFilter") ClinicalDataBinCountFilter interceptedClinicalDataBinCountFilter - ) { - StudyViewFilter studyViewFilter = clinicalDataBinUtil.removeSelfFromFilter(interceptedClinicalDataBinCountFilter); - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(studyViewFilter); - List clinicalDataBins = - instance.cachableFetchClinicalDataBinCounts(dataBinMethod, interceptedClinicalDataBinCountFilter, singleStudyUnfiltered); - - return new ResponseEntity<>(clinicalDataBins, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cachableFetchClinicalDataBinCounts( - DataBinMethod dataBinMethod, - ClinicalDataBinCountFilter interceptedClinicalDataBinCountFilter, - boolean singleStudyUnfiltered - ) { - return clinicalDataBinUtil.fetchClinicalDataBinCounts( - dataBinMethod, - interceptedClinicalDataBinCountFilter, - // we don't need to remove filter again since we already did it in the previous step - false - ); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/custom-data-bin-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch custom data bin counts by study view filter") - public ResponseEntity> fetchCustomDataBinCounts( - @ApiParam("Method for data binning") - @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, - @ApiParam(required = true, value = "Clinical data bin count filter") - @Valid @RequestBody(required = false) ClinicalDataBinCountFilter clinicalDataBinCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedClinicalDataBinCountFilter") ClinicalDataBinCountFilter interceptedClinicalDataBinCountFilter - ) { - // TODO code shared with ClinicalDataController.fetchCustomDataCounts - List attributes = interceptedClinicalDataBinCountFilter.getAttributes(); - StudyViewFilter studyViewFilter = interceptedClinicalDataBinCountFilter.getStudyViewFilter(); - if (attributes.size() == 1) { - studyViewFilterUtil.removeSelfCustomDataFromFilter(attributes.get(0).getAttributeId(), studyViewFilter); - } - List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); - - if (filteredSampleIdentifiers.isEmpty()) { - return new ResponseEntity<>(new ArrayList<>(), HttpStatus.OK); - } - - final List clinicalDataBins = clinicalDataBinUtil.fetchCustomDataBinCounts(dataBinMethod, interceptedClinicalDataBinCountFilter, false); - - return new ResponseEntity<>(clinicalDataBins, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection',T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/mutated-genes/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch mutated genes by study view filter") - public ResponseEntity> fetchMutatedGenes( - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter - ) throws StudyNotFoundException { - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List alterationCountByGenes = instance.cachedFetchMutatedGenes(interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(alterationCountByGenes, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cachedFetchMutatedGenes( - StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered - ) throws StudyNotFoundException { - AlterationFilter annotationFilters = interceptedStudyViewFilter.getAlterationFilter(); - - List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - List alterationCountByGenes = new ArrayList<>(); - if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); - alterationCountByGenes = studyViewService.getMutationAlterationCountByGenes(studyIds, sampleIds, annotationFilters); - } - return alterationCountByGenes; - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/structuralvariant-genes/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch structural variant genes by study view filter") - public ResponseEntity> fetchStructuralVariantGenes( - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. This attribute is needed for the @PreAuthorize tag above. - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter - ) throws StudyNotFoundException { - - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List alterationCountByGenes = - instance.cacheableFetchStructuralVariantGenes(interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(alterationCountByGenes, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cacheableFetchStructuralVariantGenes( - StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered - ) throws StudyNotFoundException { - AlterationFilter annotationFilters = interceptedStudyViewFilter.getAlterationFilter(); - - List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - List alterationCountByGenes = new ArrayList<>(); - if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); - alterationCountByGenes = studyViewService.getStructuralVariantAlterationCountByGenes(studyIds, sampleIds, annotationFilters); - } - return alterationCountByGenes; - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/structuralvariant-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch structural variant genes by study view filter") - public ResponseEntity> fetchStructuralVariantCounts( - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. This attribute is needed for the @PreAuthorize tag above. - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter - ) throws StudyNotFoundException { - - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List alterationCountByStructuralVariants = - instance.cacheableFetchStructuralVariantCounts(interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(alterationCountByStructuralVariants, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cacheableFetchStructuralVariantCounts( - StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered - ) throws StudyNotFoundException { - - List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); - return studyViewService.getStructuralVariantAlterationCounts(studyIds, sampleIds, interceptedStudyViewFilter.getAlterationFilter()); - } - return new ArrayList<>(); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/cna-genes/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch CNA genes by study view filter") - public ResponseEntity> fetchCNAGenes( - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter - ) throws StudyNotFoundException { - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List copyNumberCountByGenes = instance.cacheableFetchCNAGenes(interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(copyNumberCountByGenes, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cacheableFetchCNAGenes(StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered) throws StudyNotFoundException { - AlterationFilter alterationFilter = interceptedStudyViewFilter.getAlterationFilter(); - - List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - List copyNumberCountByGenes = new ArrayList<>(); - if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); - copyNumberCountByGenes = studyViewService.getCNAAlterationCountByGenes(studyIds, sampleIds, alterationFilter); - } - return copyNumberCountByGenes; - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/filtered-samples/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch sample IDs by study view filter") - public ResponseEntity> fetchFilteredSamples( - @ApiParam("Whether to negate the study view filters") - @RequestParam(defaultValue = "false") Boolean negateFilters, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter, - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter) { - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - - studyViewFilterUtil.extractStudyAndSampleIds( - studyViewFilterApplier.apply(interceptedStudyViewFilter, negateFilters), studyIds, sampleIds); - - List result = new ArrayList<>(); - if (!sampleIds.isEmpty()) { - result = sampleService.fetchSamples(studyIds, sampleIds, Projection.ID.name()); - } - return new ResponseEntity<>(result, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profile-sample-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch sample counts by study view filter") - public ResponseEntity> fetchMolecularProfileSampleCounts( - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter - ) - { - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List sampleCounts = instance.cacheableFetchMolecularProfileSampleCounts(interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(sampleCounts, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cacheableFetchMolecularProfileSampleCounts( - StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered - ) { - List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - List genomicDataCounts = new ArrayList<>(); - if(CollectionUtils.isNotEmpty(sampleIdentifiers)) { - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); - genomicDataCounts = studyViewService.getGenomicDataCounts(studyIds, sampleIds); - } - return genomicDataCounts; - } - - private static boolean isLogScalePossibleForAttribute(String clinicalAttributeId) { - return clinicalAttributeId.equals("MUTATION_COUNT"); - } - - private static double logScale(double val) { - return Math.log(1+val); - } - - private static double parseValueLog(ClinicalData c) { - return StudyViewController.logScale(Double.parseDouble(c.getAttrValue())); - } - - private static double parseValueLinear(ClinicalData c) { - return Double.parseDouble(c.getAttrValue()); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-data-density-plot/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical data density plot bins by study view filter") - @Validated - public ResponseEntity fetchClinicalDataDensityPlot( - @ApiParam(required = true, value = "Clinical Attribute ID of the X axis") - @RequestParam String xAxisAttributeId, - @ApiParam("Number of the bins in X axis") - @RequestParam(defaultValue = "50") Integer xAxisBinCount, - @ApiParam("Starting point of the X axis, if different than smallest value") - @RequestParam(required = false) BigDecimal xAxisStart, - @ApiParam("Starting point of the X axis, if different than largest value") - @RequestParam(required = false) BigDecimal xAxisEnd, - @ApiParam(required = true, value = "Clinical Attribute ID of the Y axis") - @RequestParam String yAxisAttributeId, - @ApiParam("Number of the bins in Y axis") - @RequestParam(defaultValue = "50") Integer yAxisBinCount, - @ApiParam("Starting point of the Y axis, if different than smallest value") - @RequestParam(required = false) BigDecimal yAxisStart, - @ApiParam("Starting point of the Y axis, if different than largest value") - @RequestParam(required = false) BigDecimal yAxisEnd, - @ApiParam(value="Use log scale for X axis") - @RequestParam(required = false, defaultValue = "false") Boolean xAxisLogScale, - @ApiParam(value="Use log scale for Y axis", defaultValue = "false") - @RequestParam(required = false, defaultValue = "false") Boolean yAxisLogScale, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter, - @ApiParam(required = true, value = "Study view filter") - @RequestBody(required = false) StudyViewFilter studyViewFilter) { - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(studyViewFilterApplier.apply(interceptedStudyViewFilter), studyIds, sampleIds); - DensityPlotData result = new DensityPlotData(); - result.setBins(new ArrayList<>()); - if (sampleIds.isEmpty()) { - return new ResponseEntity<>(result, HttpStatus.OK); - } - - List sampleAttributeIds = new ArrayList<>(); - List patientAttributeIds = new ArrayList<>(); - - List clinicalAttributes = clinicalAttributeService - .getClinicalAttributesByStudyIdsAndAttributeIds(studyIds, - Arrays.asList(xAxisAttributeId, yAxisAttributeId)); - - clinicalAttributeUtil.extractCategorizedClinicalAttributes(clinicalAttributes, sampleAttributeIds, patientAttributeIds, patientAttributeIds); - - List patientIds = new ArrayList<>(); - List studyIdsOfPatients = new ArrayList<>(); - Map>> patientToSamples = null; - - - if (CollectionUtils.isNotEmpty(patientAttributeIds)) { - List samples = sampleService.fetchSamples(studyIds, sampleIds, Projection.DETAILED.name()); - List patients = patientService.getPatientsOfSamples(studyIds, sampleIds); - patientIds = patients.stream().map(Patient::getStableId).collect(Collectors.toList()); - studyIdsOfPatients = patients.stream().map(Patient::getCancerStudyIdentifier).collect(Collectors.toList()); - patientToSamples = samples.stream().collect( - Collectors.groupingBy(Sample::getPatientStableId, Collectors.groupingBy(Sample::getCancerStudyIdentifier)) - ); - } - - List clinicalDataList = clinicalDataFetcher.fetchClinicalData( - studyIds, sampleIds, patientIds, studyIdsOfPatients, sampleAttributeIds, patientAttributeIds, null - ); - - List sampleClinicalDataList; - // put all clinical data into sample form - if (CollectionUtils.isNotEmpty(patientAttributeIds)) { - sampleClinicalDataList = new ArrayList<>(); - for (ClinicalData d: clinicalDataList) { - if (d.getSampleId() == null) { - // null sample id means its a patient data, - // we need to distribute the value to samples - List samplesForPatient = patientToSamples.get( - d.getPatientId() - ).get(d.getStudyId()); - if (samplesForPatient != null) { - for (Sample s: samplesForPatient) { - ClinicalData newData = new ClinicalData(); - newData.setAttrId(d.getAttrId()); - newData.setPatientId(d.getPatientId()); - newData.setStudyId(d.getStudyId()); - newData.setAttrValue(d.getAttrValue()); - newData.setSampleId(s.getStableId()); - sampleClinicalDataList.add(newData); - } - } else { - // patient has no samples - this shouldn't happen and could affect the integrity - // of the data analysis - return new ResponseEntity<>(null, HttpStatus.INTERNAL_SERVER_ERROR); - } - } else { - // if its a sample data, just add it to the list - sampleClinicalDataList.add(d); - } - } - } else { - sampleClinicalDataList = clinicalDataList; - } - - // clinicalDataMap is a map sampleId->studyId->data - Map>> clinicalDataMap = sampleClinicalDataList.stream().collect(Collectors.groupingBy(ClinicalData::getSampleId, - Collectors.groupingBy(ClinicalData::getStudyId))); - - List filteredClinicalDataList = new ArrayList<>(); - clinicalDataMap.forEach((k, v) -> v.forEach((m, n) -> { - if ( - // n.size() == 2 means we have clinical data for the sample for both of the queried attributes - n.size() == 2 && - // check if both of the sample data are numerical - NumberUtils.isCreatable(n.get(0).getAttrValue()) && NumberUtils.isCreatable(n.get(1).getAttrValue())) { - filteredClinicalDataList.addAll(n); - } - })); - if (filteredClinicalDataList.isEmpty()) { - return new ResponseEntity<>(result, HttpStatus.OK); - } - - Map> partition = filteredClinicalDataList.stream().collect( - Collectors.partitioningBy(c -> c.getAttrId().equals(xAxisAttributeId))); - - boolean useXLogScale = xAxisLogScale && StudyViewController.isLogScalePossibleForAttribute(xAxisAttributeId); - boolean useYLogScale = yAxisLogScale && StudyViewController.isLogScalePossibleForAttribute(yAxisAttributeId); - - double[] xValues = partition.get(true).stream().mapToDouble( - useXLogScale ? StudyViewController::parseValueLog : StudyViewController::parseValueLinear - ).toArray(); - double[] yValues = partition.get(false).stream().mapToDouble( - useYLogScale ? StudyViewController::parseValueLog : StudyViewController::parseValueLinear - ).toArray(); - double[] xValuesCopy = Arrays.copyOf(xValues, xValues.length); - double[] yValuesCopy = Arrays.copyOf(yValues, yValues.length); - Arrays.sort(xValuesCopy); - Arrays.sort(yValuesCopy); - - double xAxisStartValue = xAxisStart == null ? xValuesCopy[0] : - (useXLogScale ? StudyViewController.logScale(xAxisStart.doubleValue()) : xAxisStart.doubleValue()); - double xAxisEndValue = xAxisEnd == null ? xValuesCopy[xValuesCopy.length - 1] : - (useXLogScale ? StudyViewController.logScale(xAxisEnd.doubleValue()) : xAxisEnd.doubleValue()); - double yAxisStartValue = yAxisStart == null ? yValuesCopy[0] : - (useYLogScale ? StudyViewController.logScale(yAxisStart.doubleValue()) : yAxisStart.doubleValue()); - double yAxisEndValue = yAxisEnd == null ? yValuesCopy[yValuesCopy.length - 1] : - (useYLogScale ? StudyViewController.logScale(yAxisEnd.doubleValue()) : yAxisEnd.doubleValue()); - double xAxisBinInterval = (xAxisEndValue - xAxisStartValue) / xAxisBinCount; - double yAxisBinInterval = (yAxisEndValue - yAxisStartValue) / yAxisBinCount; - List bins = result.getBins(); - for (int i = 0; i < xAxisBinCount; i++) { - for (int j = 0; j < yAxisBinCount; j++) { - DensityPlotBin densityPlotBin = new DensityPlotBin(); - densityPlotBin.setBinX(new BigDecimal(xAxisStartValue + (i * xAxisBinInterval))); - densityPlotBin.setBinY(new BigDecimal(yAxisStartValue + (j * yAxisBinInterval))); - densityPlotBin.setCount(0); - bins.add(densityPlotBin); - } - } - - for (int i = 0; i < xValues.length; i++) { - double xValue = xValues[i]; - double yValue = yValues[i]; - int xBinIndex = (int) ((xValue - xAxisStartValue) / xAxisBinInterval); - int yBinIndex = (int) ((yValue - yAxisStartValue) / yAxisBinInterval); - int index = (int) (((xBinIndex - (xBinIndex == xAxisBinCount ? 1 : 0)) * yAxisBinCount) + - (yBinIndex - (yBinIndex == yAxisBinCount ? 1 : 0))); - DensityPlotBin densityPlotBin = bins.get(index); - densityPlotBin.setCount(densityPlotBin.getCount() + 1); - BigDecimal xValueBigDecimal = new BigDecimal(xValue); - BigDecimal yValueBigDecimal = new BigDecimal(yValue); - if (densityPlotBin.getMinX() != null) { - if (densityPlotBin.getMinX().compareTo(xValueBigDecimal) > 0) { - densityPlotBin.setMinX(xValueBigDecimal); - } - } else { - densityPlotBin.setMinX(xValueBigDecimal); - } - if (densityPlotBin.getMaxX() != null) { - if (densityPlotBin.getMaxX().compareTo(xValueBigDecimal) < 0) { - densityPlotBin.setMaxX(xValueBigDecimal); - } - } else { - densityPlotBin.setMaxX(xValueBigDecimal); - } - if (densityPlotBin.getMinY() != null) { - if (densityPlotBin.getMinY().compareTo(yValueBigDecimal) > 0) { - densityPlotBin.setMinY(yValueBigDecimal); - } - } else { - densityPlotBin.setMinY(yValueBigDecimal); - } - if (densityPlotBin.getMaxY() != null) { - if (densityPlotBin.getMaxY().compareTo(yValueBigDecimal) < 0) { - densityPlotBin.setMaxY(yValueBigDecimal); - } - } else { - densityPlotBin.setMaxY(yValueBigDecimal); - } - } - - if (xValues.length > 1) { - // need at least 2 entries in each to compute correlation - result.setPearsonCorr(new PearsonsCorrelation().correlation(xValues, yValues)); - result.setSpearmanCorr(new SpearmansCorrelation().correlation(xValues, yValues)); - } else { - // if less than 1 entry, just set 0 correlation - result.setSpearmanCorr(0.0); - result.setPearsonCorr(0.0); - } - - // filter out empty bins - result.setBins(result.getBins().stream().filter((bin)->(bin.getCount() > 0)).collect(Collectors.toList())); - - return new ResponseEntity<>(result, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-data-violin-plots/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch violin plot curves per categorical clinical data value, filtered by study view filter") - public ResponseEntity fetchClinicalDataViolinPlots( - @ApiParam(required = true, value = "Clinical Attribute ID of the categorical attribute") - @RequestParam String categoricalAttributeId, - @ApiParam(required = true, value = "Clinical Attribute ID of the numerical attribute") - @RequestParam String numericalAttributeId, - @ApiParam("Starting point of the violin plot axis, if different than smallest value") - @RequestParam(required = false) BigDecimal axisStart, - @ApiParam("Ending point of the violin plot axis, if different than largest value") - @RequestParam(required = false) BigDecimal axisEnd, - @ApiParam("Number of points in the curve") - @RequestParam(required = false, defaultValue = "100") BigDecimal numCurvePoints, - @ApiParam(value="Use log scale for the numerical attribute") - @RequestParam(required = false, defaultValue = "false") Boolean logScale, - @ApiParam(value="Sigma stepsize multiplier") - @RequestParam(required = false, defaultValue = "1") BigDecimal sigmaMultiplier, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter, - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter) { - - ClinicalViolinPlotData result = new ClinicalViolinPlotData(); - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - // first get samples that are filtered by all current filters - this will give us - // the by-row sample counts - studyViewFilterUtil.extractStudyAndSampleIds(studyViewFilterApplier.apply(interceptedStudyViewFilter), studyIds, sampleIds); - List filteredSamples = sampleService.fetchSamples(studyIds, sampleIds, Projection.DETAILED.name()); - - List studyIdsWithoutNumericalFilter = new ArrayList<>(); - List sampleIdsWithoutNumericalFilter = new ArrayList<>(); - // next, get samples that are filtered without the numerical filter - this will - // give us the violin plot data - if (interceptedStudyViewFilter.getClinicalDataFilters() != null) { - // Remove numerical clinical data filter, if there is one - interceptedStudyViewFilter.getClinicalDataFilters().stream() - .filter(f->f.getAttributeId().equals(numericalAttributeId)) - .findAny() - .ifPresent(f->interceptedStudyViewFilter.getClinicalDataFilters().remove(f)); - } - studyViewFilterUtil.extractStudyAndSampleIds( - studyViewFilterApplier.apply(interceptedStudyViewFilter), - studyIdsWithoutNumericalFilter, - sampleIdsWithoutNumericalFilter - ); - - if (sampleIds.isEmpty()) { - return new ResponseEntity<>(result, HttpStatus.OK); - } - - List sampleAttributeIds = new ArrayList<>(); - List patientAttributeIds = new ArrayList<>(); - - List clinicalAttributes = clinicalAttributeService - .getClinicalAttributesByStudyIdsAndAttributeIds(studyIds, - Arrays.asList(categoricalAttributeId, numericalAttributeId)); - - clinicalAttributeUtil.extractCategorizedClinicalAttributes(clinicalAttributes, sampleAttributeIds, patientAttributeIds, patientAttributeIds); - - List patientIds = new ArrayList<>(); - List studyIdsOfPatients = new ArrayList<>(); - Map>> patientToSamples = null; - - if (CollectionUtils.isNotEmpty(patientAttributeIds)) { - List samplesWithoutNumericalFilter = sampleService.fetchSamples(studyIdsWithoutNumericalFilter, sampleIdsWithoutNumericalFilter, Projection.DETAILED.name()); - List patients = patientService.getPatientsOfSamples(studyIdsWithoutNumericalFilter, sampleIdsWithoutNumericalFilter); - patientIds = patients.stream().map(Patient::getStableId).collect(Collectors.toList()); - studyIdsOfPatients = patients.stream().map(Patient::getCancerStudyIdentifier).collect(Collectors.toList()); - patientToSamples = samplesWithoutNumericalFilter.stream().collect( - Collectors.groupingBy(Sample::getPatientStableId, Collectors.groupingBy(Sample::getCancerStudyIdentifier)) - ); - } - - List clinicalDataList = clinicalDataFetcher.fetchClinicalData( - studyIdsWithoutNumericalFilter, sampleIdsWithoutNumericalFilter, patientIds, studyIdsOfPatients, sampleAttributeIds, patientAttributeIds, null - ); - - List sampleClinicalDataList; - // put all clinical data into sample form - if (CollectionUtils.isNotEmpty(patientAttributeIds)) { - sampleClinicalDataList = new ArrayList<>(); - for (ClinicalData d: clinicalDataList) { - if (d.getSampleId() == null) { - // null sample id means its a patient data, - // we need to distribute the value to samples - List samplesForPatient = patientToSamples.get(d.getPatientId()).get(d.getStudyId()); - if (samplesForPatient != null) { - for (Sample s: samplesForPatient) { - ClinicalData newData = new ClinicalData(); - newData.setInternalId(s.getInternalId()); - newData.setAttrId(d.getAttrId()); - newData.setPatientId(d.getPatientId()); - newData.setStudyId(d.getStudyId()); - newData.setAttrValue(d.getAttrValue()); - newData.setSampleId(s.getStableId()); - sampleClinicalDataList.add(newData); - } - } else { - // patient has no samples - this shouldn't happen and could affect the integrity - // of the data analysis - return new ResponseEntity<>(null, HttpStatus.INTERNAL_SERVER_ERROR); - } - } else { - // if its a sample data, just add it to the list - sampleClinicalDataList.add(d); - } - } - } else { - sampleClinicalDataList = clinicalDataList; - } - - boolean useLogScale = logScale && StudyViewController.isLogScalePossibleForAttribute(numericalAttributeId); - - - result = violinPlotService.getClinicalViolinPlotData( - sampleClinicalDataList, - filteredSamples, - axisStart, - axisEnd, - numCurvePoints, - useLogScale, - sigmaMultiplier - ); - - return new ResponseEntity<>(result, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/sample-lists-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch case list sample counts by study view filter") - public List fetchCaseListCounts( - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) StudyViewFilter studyViewFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") StudyViewFilter interceptedStudyViewFilter) { - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - List filteredSampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); - List sampleLists = sampleListService.getAllSampleListsInStudies(studyIds, - Projection.DETAILED.name()); - - HashMap sampleCountBySampleListId = new HashMap(); - - Map filteredSampleSet = filteredSampleIdentifiers.stream() - .collect(Collectors.toMap(sampleidentifier -> studyViewFilterUtil - .getCaseUniqueKey(sampleidentifier.getStudyId(), sampleidentifier.getSampleId()), - Function.identity())); - - for (SampleList sampleList : sampleLists) { - for (String sampleId : sampleList.getSampleIds()) { - if (filteredSampleSet.containsKey( - studyViewFilterUtil.getCaseUniqueKey(sampleList.getCancerStudyIdentifier(), sampleId))) { - Integer count = sampleCountBySampleListId.getOrDefault(sampleList.getStableId(), 0); - sampleCountBySampleListId.put(sampleList.getStableId(), count + 1); - } - } - } - - return studyViewFilterUtil - .categorizeSampleLists(sampleLists) - .entrySet() - .stream() - .map(entry -> { - CaseListDataCount dataCount = new CaseListDataCount(); - dataCount.setValue(entry.getKey()); - - Integer count = entry.getValue().stream().mapToInt(sampleList -> { - return sampleCountBySampleListId.getOrDefault(sampleList.getStableId(), 0); - }).sum(); - - dataCount.setCount(count); - dataCount.setLabel(entry.getValue().get(0).getName()); - - return dataCount; - }) - .filter(dataCount -> dataCount.getCount() > 0) - .collect(Collectors.toList()); - - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/genomic-data-bin-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch genomic data bin counts by study view filter") - public ResponseEntity> fetchGenomicDataBinCounts( - @ApiParam("Method for data binning") @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, - @ApiParam(required = true, value = "Genomic data bin count filter") @Valid @RequestBody(required = false) GenomicDataBinCountFilter genomicDataBinCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this - // attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedGenomicDataBinCountFilter") GenomicDataBinCountFilter interceptedGenomicDataBinCountFilter) { - - return new ResponseEntity<>(studyViewFilterApplier.getDataBins(dataBinMethod, interceptedGenomicDataBinCountFilter), HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/genomic-data-counts/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch genomic data counts by GenomicDataCountFilter") - public ResponseEntity> fetchGenomicDataCounts( - @ApiParam(required = true, value = "Genomic data count filter") @Valid @RequestBody(required = false) GenomicDataCountFilter genomicDataCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiParam(required = true, value = "Intercepted Genomic Data Count Filter") - @ApiIgnore - @Valid @RequestAttribute(required = false, value = "interceptedGenomicDataCountFilter") GenomicDataCountFilter interceptedGenomicDataCountFilter - ) throws StudyNotFoundException { - List gdFilters = interceptedGenomicDataCountFilter.getGenomicDataFilters(); - StudyViewFilter studyViewFilter = interceptedGenomicDataCountFilter.getStudyViewFilter(); - // when there is only one filter, it means study view is doing a single chart filter operation - // remove filter from studyViewFilter to return all data counts - // the reason we do this is to make sure after chart get filtered, user can still see unselected portion of the chart - if (gdFilters.size() == 1) { - studyViewFilterUtil.removeSelfFromGenomicDataFilter( - gdFilters.get(0).getHugoGeneSymbol(), - gdFilters.get(0).getProfileType(), - studyViewFilter); - } - List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); - - if (filteredSampleIdentifiers.isEmpty()) { - return new ResponseEntity<>(new ArrayList<>(), HttpStatus.OK); - } - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); - - List result = studyViewService.getCNAAlterationCountsByGeneSpecific( - studyIds, - sampleIds, - gdFilters.stream().map(gdFilter -> new Pair<>(gdFilter.getHugoGeneSymbol(), gdFilter.getProfileType())).collect(Collectors.toList())); - - return new ResponseEntity<>(result, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic-assay-data-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch generic assay data counts by study view filter") - public ResponseEntity> fetchGenericAssayDataCounts( - @ApiParam(required = true, value = "Generic assay data count filter") @Valid @RequestBody(required = false) GenericAssayDataCountFilter genericAssayDataCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this - // attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedGenericAssayDataCountFilter") GenericAssayDataCountFilter interceptedGenericAssayDataCountFilter) { - - List gaFilters = interceptedGenericAssayDataCountFilter.getGenericAssayDataFilters(); - StudyViewFilter studyViewFilter = interceptedGenericAssayDataCountFilter.getStudyViewFilter(); - // when there is only one filter, it means study view is doing a single chart filter operation - // remove filter from studyViewFilter to return all data counts - // the reason we do this is to make sure after chart get filtered, user can still see unselected portion of the chart - if (gaFilters.size() == 1) { - studyViewFilterUtil.removeSelfFromGenericAssayFilter(gaFilters.get(0).getStableId(), studyViewFilter); - } - List filteredSampleIdentifiers = studyViewFilterApplier.apply(studyViewFilter); - - if (filteredSampleIdentifiers.isEmpty()) { - return new ResponseEntity<>(new ArrayList<>(), HttpStatus.OK); - } - - List studyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); - - List result = studyViewService.fetchGenericAssayDataCounts( - sampleIds, - studyIds, - gaFilters.stream().map(GenericAssayDataFilter::getStableId).collect(Collectors.toList()), - gaFilters.stream().map(GenericAssayDataFilter::getProfileType).collect(Collectors.toList())); - - return new ResponseEntity<>(result, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/generic-assay-data-bin-counts/fetch", method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch generic assay data bin counts by study view filter") - public ResponseEntity> fetchGenericAssayDataBinCounts( - @ApiParam("Method for data binning") @RequestParam(defaultValue = "DYNAMIC") DataBinMethod dataBinMethod, - @ApiParam(required = true, value = "Generic assay data bin count filter") @Valid @RequestBody(required = false) GenericAssayDataBinCountFilter genericAssayDataBinCountFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this - // attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedGenericAssayDataBinCountFilter") GenericAssayDataBinCountFilter interceptedGenericAssayDataBinCountFilter) { - - return new ResponseEntity<>(studyViewFilterApplier.getDataBins(dataBinMethod, interceptedGenericAssayDataBinCountFilter), HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/clinical-data-table/fetch", method = RequestMethod.POST, - consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Fetch clinical data for the Clinical Tab of Study View") - public ResponseEntity fetchClinicalDataClinicalTable( - @ApiParam(required = true, value = "Study view filter") - @Valid @RequestBody(required = false) - StudyViewFilter studyViewFilter, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") - Collection involvedCancerStudies, - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid @RequestAttribute(required = false, value = "interceptedStudyViewFilter") - StudyViewFilter interceptedStudyViewFilter, - @ApiParam("Page size of the result list") - @Max(CLINICAL_TAB_MAX_PAGE_SIZE) - @Min(PagingConstants.NO_PAGING_PAGE_SIZE) - @RequestParam(defaultValue = PagingConstants.DEFAULT_NO_PAGING_PAGE_SIZE) - Integer pageSize, - @ApiParam("Page number of the result list") - @Min(PagingConstants.MIN_PAGE_NUMBER) - @RequestParam(defaultValue = PagingConstants.DEFAULT_PAGE_NUMBER) - Integer pageNumber, - @ApiParam("Search term to filter sample rows. Samples are returned " + - "with a partial match to the search term for any sample clinical attribute.") - @RequestParam(defaultValue = "") - String searchTerm, - @ApiParam(value = "sampleId, patientId, or the ATTR_ID to sorted by") - @RequestParam(required = false) - // TODO: Can we narrow down this string to a specific enum? - String sortBy, - @ApiParam("Direction of the sort") - @RequestParam(defaultValue = "ASC") - Direction direction - ) { - List sampleStudyIds = new ArrayList<>(); - List sampleIds = new ArrayList<>(); - List filteredSampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, sampleStudyIds, sampleIds); - - List sampleClinicalData = clinicalDataService.fetchSampleClinicalTable( - sampleStudyIds, - sampleIds, - pageSize, - pageNumber, - searchTerm, - sortBy, - direction.name() - ); - Integer total = clinicalDataService.fetchSampleClinicalTableCount( - sampleStudyIds, - sampleIds, - searchTerm, - sortBy, - direction.name() - ); - - // Return empty when possible. - if (sampleClinicalData.isEmpty()) { - return new ResponseEntity<>(new ClinicalDataCollection(), HttpStatus.OK); - } - - // Resolve for which patient clinical data should be included. - final List> patientIdentifiers = sampleClinicalData.stream() - .map(d -> new ImmutablePair<>(d.getStudyId(), d.getPatientId())) - .distinct() - .collect(Collectors.toList()); - List patientStudyIds = patientIdentifiers.stream().map(p -> p.getLeft()).collect(Collectors.toList()); - List patientIds = patientIdentifiers.stream().map(p -> p.getRight()).collect(Collectors.toList()); - - - List searchAllAttributes = null; - final List patientClinicalData = clinicalDataService.fetchClinicalData(patientStudyIds, patientIds, - searchAllAttributes, ClinicalDataType.PATIENT.name(), Projection.SUMMARY.name()); - - final ClinicalDataCollection clinicalDataCollection = new ClinicalDataCollection(); - clinicalDataCollection.setSampleClinicalData(sampleClinicalData); - clinicalDataCollection.setPatientClinicalData(patientClinicalData); - - HttpHeaders responseHeaders = new HttpHeaders(); - responseHeaders.add(HeaderKeyConstants.TOTAL_COUNT, total.toString()); - return new ResponseEntity<>(clinicalDataCollection, responseHeaders, HttpStatus.OK); - } - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @PostMapping(value = "/clinical-event-type-counts/fetch", consumes = MediaType.APPLICATION_JSON_VALUE, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get Counts of Clinical Event Types by Study View Filter") - public ResponseEntity> getClinicalEventTypeCounts( - @ApiParam(required = true, value = "Study view filter") - @Valid - @RequestBody(required = false) - StudyViewFilter studyViewFilter, - - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") - Collection involvedCancerStudies, - - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid - @RequestAttribute(required = false, value = "interceptedStudyViewFilter") - StudyViewFilter interceptedStudyViewFilter - ) { - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List eventTypeCounts = instance.cachedClinicalEventTypeCounts(interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(eventTypeCounts, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cachedClinicalEventTypeCounts( - StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered - ){ - List filteredSampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - List sampleIds = new ArrayList<>(); - List studyIds = new ArrayList<>(); - studyViewFilterUtil.extractStudyAndSampleIds(filteredSampleIdentifiers, studyIds, sampleIds); - return clinicalEventService.getClinicalEventTypeCounts(studyIds, sampleIds); - } -} diff --git a/web/src/main/java/org/cbioportal/web/TreatmentController.java b/web/src/main/java/org/cbioportal/web/TreatmentController.java deleted file mode 100644 index c17ecda37f2..00000000000 --- a/web/src/main/java/org/cbioportal/web/TreatmentController.java +++ /dev/null @@ -1,188 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.PatientTreatmentRow; -import org.cbioportal.model.SampleTreatmentRow; -import org.cbioportal.model.ClinicalEventKeyCode; -import org.cbioportal.service.TreatmentService; -import org.cbioportal.web.config.annotation.PublicApi; -import org.cbioportal.web.parameter.*; -import org.cbioportal.web.util.StudyViewFilterApplier; -import org.cbioportal.web.util.StudyViewFilterUtil; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.context.ApplicationContext; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.security.access.prepost.PreAuthorize; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.*; -import springfox.documentation.annotations.ApiIgnore; - -import javax.annotation.PostConstruct; -import javax.validation.Valid; -import javax.validation.constraints.Size; -import java.util.ArrayList; -import java.util.Collection; -import java.util.List; -import java.util.Set; - -@PublicApi -@RestController -@Validated -@Api(tags = "Treatments", description = " ") -public class TreatmentController { - @Autowired - private ApplicationContext applicationContext; - TreatmentController instance; - @PostConstruct - private void init() { - instance = applicationContext.getBean(TreatmentController.class); - } - - @Autowired - private StudyViewFilterUtil studyViewFilterUtil; - @Autowired - private StudyViewFilterUtil filterUtil; - - @Autowired - private TreatmentService treatmentService; - - @Autowired - private StudyViewFilterApplier studyViewFilterApplier; - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/treatments/patient", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all patient level treatments") - public ResponseEntity> getAllPatientTreatments( - @ApiParam(required = false, defaultValue = "Agent") - @RequestParam(name = "tier", required = false, defaultValue = "Agent") - ClinicalEventKeyCode tier, - - @ApiParam(required = true, value = "Study view filter") - @Valid - @RequestBody(required = false) - StudyViewFilter studyViewFilter, - - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") - Collection involvedCancerStudies, - - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid - @RequestAttribute(required = false, value = "interceptedStudyViewFilter") - StudyViewFilter interceptedStudyViewFilter - ) { - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List treatments = - instance.cachableGetAllPatientTreatments(tier, interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(treatments, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cachableGetAllPatientTreatments( - ClinicalEventKeyCode tier, StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered - ) { - List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - List sampleIds = new ArrayList<>(); - List studyIds = new ArrayList<>(); - filterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); - - return treatmentService.getAllPatientTreatmentRows(sampleIds, studyIds, tier); - } - - - @PreAuthorize("hasPermission(#involvedCancerStudies, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/treatments/sample", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get all sample level treatments") - public ResponseEntity> getAllSampleTreatments( - @ApiParam(required = false, defaultValue = "Agent") - @RequestParam(name = "tier", required = false, defaultValue = "Agent") - ClinicalEventKeyCode tier, - - @ApiParam(required = true, value = "Study view filter") - @Valid - @RequestBody(required = false) - StudyViewFilter studyViewFilter, - - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface - @RequestAttribute(required = false, value = "involvedCancerStudies") - Collection involvedCancerStudies, - - @ApiIgnore // prevent reference to this attribute in the swagger-ui interface. this attribute is needed for the @PreAuthorize tag above. - @Valid - @RequestAttribute(required = false, value = "interceptedStudyViewFilter") - StudyViewFilter interceptedStudyViewFilter - ) { - boolean singleStudyUnfiltered = studyViewFilterUtil.isSingleStudyUnfiltered(interceptedStudyViewFilter); - List treatments = - instance.cacheableGetAllSampleTreatments(tier, interceptedStudyViewFilter, singleStudyUnfiltered); - return new ResponseEntity<>(treatments, HttpStatus.OK); - } - - @Cacheable( - cacheResolver = "staticRepositoryCacheOneResolver", - condition = "@cacheEnabledConfig.getEnabled() && #singleStudyUnfiltered" - ) - public List cacheableGetAllSampleTreatments( - ClinicalEventKeyCode tier, StudyViewFilter interceptedStudyViewFilter, boolean singleStudyUnfiltered - ) { - List sampleIdentifiers = studyViewFilterApplier.apply(interceptedStudyViewFilter); - List sampleIds = new ArrayList<>(); - List studyIds = new ArrayList<>(); - filterUtil.extractStudyAndSampleIds(sampleIdentifiers, studyIds, sampleIds); - - return treatmentService.getAllSampleTreatmentRows(sampleIds, studyIds, tier); - } - - @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/treatments/display-patient", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Should patient level treatments be displayed") - public ResponseEntity getContainsTreatmentData( - @ApiParam(required = false, defaultValue = "Agent") - @RequestParam(name = "tier", required = false, defaultValue = "Agent") - ClinicalEventKeyCode tier, - - @ApiParam(required = true, value = "List of Study IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody - Set studyIds - ) { - Boolean containsTreatmentData = instance.cacheableGetContainsTreatmentData(studyIds, tier); - return new ResponseEntity<>(containsTreatmentData, HttpStatus.OK); - } - - // Caching enabled for any number of studies as the requests contains only studyIds and the response is a boolean - @Cacheable(cacheResolver = "generalRepositoryCacheResolver", condition = "@cacheEnabledConfig.getEnabled()") - public Boolean cacheableGetContainsTreatmentData(Set studyIds, ClinicalEventKeyCode tier) { - return treatmentService.containsTreatmentData(new ArrayList<>(studyIds), tier); - } - - @PreAuthorize("hasPermission(#studyIds, 'Collection', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/treatments/display-sample", method = RequestMethod.POST, produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Should sample level treatments be displayed") - public ResponseEntity getContainsSampleTreatmentData( - @ApiParam(required = false, defaultValue = "Agent") - @RequestParam(name = "tier", required = false, defaultValue = "Agent") - ClinicalEventKeyCode tier, - - @ApiParam(required = true, value = "List of Study IDs") - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - @RequestBody - Set studyIds - ) { - Boolean containsTreatmentData = instance.cacheableGetContainsSampleTreatmentData(studyIds, tier); - return new ResponseEntity<>(containsTreatmentData, HttpStatus.OK); - } - - @Cacheable(cacheResolver = "generalRepositoryCacheResolver", condition = "@cacheEnabledConfig.getEnabled()") - public Boolean cacheableGetContainsSampleTreatmentData(Set studyIds, ClinicalEventKeyCode tier) { - return treatmentService.containsSampleTreatmentData(new ArrayList<>(studyIds), tier); - } -} diff --git a/web/src/main/java/org/cbioportal/web/VariantCountController.java b/web/src/main/java/org/cbioportal/web/VariantCountController.java deleted file mode 100644 index 43e9b097582..00000000000 --- a/web/src/main/java/org/cbioportal/web/VariantCountController.java +++ /dev/null @@ -1,62 +0,0 @@ -package org.cbioportal.web; - -import io.swagger.annotations.Api; -import io.swagger.annotations.ApiOperation; -import io.swagger.annotations.ApiParam; -import org.cbioportal.model.VariantCount; -import org.cbioportal.service.VariantCountService; -import org.cbioportal.service.exception.MolecularProfileNotFoundException; -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.parameter.VariantCountIdentifier; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.http.HttpStatus; -import org.springframework.http.MediaType; -import org.springframework.http.ResponseEntity; -import org.springframework.validation.annotation.Validated; -import org.springframework.web.bind.annotation.PathVariable; -import org.springframework.web.bind.annotation.RequestBody; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RestController; -import org.springframework.security.access.prepost.PreAuthorize; - -import javax.validation.constraints.Size; -import java.util.ArrayList; -import java.util.List; - -@InternalApi -@RestController -@Validated -@Api(tags = "Variant Counts", description = " ") -public class VariantCountController { - - private static final int VARIANT_COUNT_MAX_PAGE_SIZE = 50000; - - @Autowired - private VariantCountService variantCountService; - - @PreAuthorize("hasPermission(#molecularProfileId, 'MolecularProfileId', T(org.cbioportal.utils.security.AccessLevel).READ)") - @RequestMapping(value = "/molecular-profiles/{molecularProfileId}/variant-counts/fetch", - method = RequestMethod.POST, consumes = MediaType.APPLICATION_JSON_VALUE, - produces = MediaType.APPLICATION_JSON_VALUE) - @ApiOperation("Get counts of specific variants within a mutation molecular profile") - public ResponseEntity> fetchVariantCounts( - @ApiParam(required = true, value = "Molecular Profile ID e.g. acc_tcga_mutations") - @PathVariable String molecularProfileId, - @ApiParam(required = true, value = "List of variant count identifiers") - @Size(min = 1, max = VARIANT_COUNT_MAX_PAGE_SIZE) - @RequestBody List variantCountIdentifiers) throws MolecularProfileNotFoundException { - - List entrezGeneIds = new ArrayList<>(); - List keywords = new ArrayList<>(); - - for (VariantCountIdentifier variantCountIdentifier : variantCountIdentifiers) { - - entrezGeneIds.add(variantCountIdentifier.getEntrezGeneId()); - keywords.add(variantCountIdentifier.getKeyword()); - } - - return new ResponseEntity<>(variantCountService.fetchVariantCounts(molecularProfileId, entrezGeneIds, keywords), - HttpStatus.OK); - } -} diff --git a/web/src/main/java/org/cbioportal/web/config/DataAccessTokenConfig.java b/web/src/main/java/org/cbioportal/web/config/DataAccessTokenConfig.java deleted file mode 100644 index e2768262d00..00000000000 --- a/web/src/main/java/org/cbioportal/web/config/DataAccessTokenConfig.java +++ /dev/null @@ -1,31 +0,0 @@ -package org.cbioportal.web.config; - -import org.cbioportal.utils.config.annotation.ConditionalOnProperty; -import org.cbioportal.web.DataAccessTokenController; -import org.cbioportal.web.OAuth2DataAccessTokenController; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import org.springframework.context.annotation.PropertySources; - -@Configuration -@PropertySources({ - @PropertySource(value="classpath:portal.properties", ignoreResourceNotFound=true), - @PropertySource(value="file:///${PORTAL_HOME}/portal.properties", ignoreResourceNotFound=true) -}) -public class DataAccessTokenConfig { - - // controller - @Bean - @ConditionalOnProperty(name = "dat.method", havingValue = "oauth2") - public OAuth2DataAccessTokenController oauth2DataAccessTokenController() { - return new OAuth2DataAccessTokenController(); - } - - @Bean - @ConditionalOnProperty(name = "dat.method", havingValue = "oauth2", isNot = true) - public DataAccessTokenController dataAccessTokenController() { - return new DataAccessTokenController(); - } - -} \ No newline at end of file diff --git a/web/src/main/java/org/cbioportal/web/config/SwaggerConfig.java b/web/src/main/java/org/cbioportal/web/config/SwaggerConfig.java deleted file mode 100644 index c335ee9852b..00000000000 --- a/web/src/main/java/org/cbioportal/web/config/SwaggerConfig.java +++ /dev/null @@ -1,102 +0,0 @@ -package org.cbioportal.web.config; - -import org.cbioportal.web.config.annotation.InternalApi; -import org.cbioportal.web.config.annotation.PublicApi; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import springfox.documentation.builders.RequestHandlerSelectors; -import springfox.documentation.service.ApiInfo; -import springfox.documentation.service.Contact; -import springfox.documentation.service.Tag; -import springfox.documentation.spi.DocumentationType; -import springfox.documentation.spring.web.plugins.Docket; -import springfox.documentation.swagger.web.UiConfiguration; -import springfox.documentation.swagger.web.UiConfigurationBuilder; -import springfox.documentation.swagger2.annotations.EnableSwagger2; - -import java.util.Collections; - -@Configuration -@EnableSwagger2 -@PropertySource("classpath:springfox.properties") -public class SwaggerConfig { - @Bean - public Docket publicApi() { - Docket d = new Docket(DocumentationType.SWAGGER_2) - .select() - .apis(RequestHandlerSelectors.withClassAnnotation(PublicApi.class)) - .build() - .useDefaultResponseMessages(false) - .apiInfo(publicApiInfo()); - - d.tags( - new Tag(PublicApiTags.CANCER_TYPES, "", 0), - new Tag(PublicApiTags.STUDIES, "", 1), - new Tag(PublicApiTags.PATIENTS, "", 2), - new Tag(PublicApiTags.SAMPLES, "", 3), - new Tag(PublicApiTags.SAMPLE_LISTS, "", 4), - new Tag(PublicApiTags.CLINICAL_ATTRIBUTES, "", 5), - new Tag(PublicApiTags.CLINICAL_DATA, "", 6), - new Tag(PublicApiTags.MOLECULAR_DATA, "", 7), - new Tag(PublicApiTags.MOLECULAR_PROFILES, "", 8), - new Tag(PublicApiTags.MUTATIONS, "", 9), - new Tag(PublicApiTags.DISCRETE_COPY_NUMBER_ALTERATIONS, "", 10), - new Tag(PublicApiTags.COPY_NUMBER_SEGMENTS, "", 11), - new Tag(PublicApiTags.GENES, "", 12), - new Tag(PublicApiTags.GENE_PANELS, "", 13), - new Tag(PublicApiTags.GENERIC_ASSAYS, "", 14), - new Tag(PublicApiTags.GENERIC_ASSAY_DATA, "", 15), - new Tag(PublicApiTags.INFO, "", 16) - ); - - return d; - } - - @Bean - public Docket internalApi() { - return new Docket(DocumentationType.SWAGGER_2).groupName("internal") - .select() - .apis(RequestHandlerSelectors.withClassAnnotation(InternalApi.class)) - .build() - .useDefaultResponseMessages(false) - .apiInfo(internalApiInfo()); - } - - @Bean - UiConfiguration uiConfig() { - return UiConfigurationBuilder.builder() - .displayRequestDuration(true) - .validatorUrl("") - .build(); - } - - private ApiInfo publicApiInfo() { - return new ApiInfo( - "cBioPortal web Public API [Beta]", - "A web service for supplying JSON formatted data to cBioPortal clients. " + - "Please note that this API is currently in beta and subject to change.", - "1.0 (beta). Backwards compatibility will be maintained (after 1.0 release)", - null, - new Contact("cBioPortal", "https://www.cbioportal.org", "cbioportal@googlegroups.com"), - "License", - "https://github.com/cBioPortal/cbioportal/blob/master/LICENSE", - Collections.emptyList() - ); - } - - private ApiInfo internalApiInfo() { - return new ApiInfo( - "cBioPortal web Internal API [Beta]", - "A web service for supplying JSON formatted data to cBioPortal clients. " + - "Please note that interal API is currently in beta and subject to change.", - "1.0 (beta). Internal API are prone to change.", - null, - new Contact("cBioPortal", "https://www.cbioportal.org", "cbioportal@googlegroups.com"), - "License", - "https://github.com/cBioPortal/cbioportal/blob/master/LICENSE", - Collections.emptyList() - ); - } -} diff --git a/web/src/main/java/org/cbioportal/web/mixin/MutationMixin.java b/web/src/main/java/org/cbioportal/web/mixin/MutationMixin.java deleted file mode 100644 index 86b80142466..00000000000 --- a/web/src/main/java/org/cbioportal/web/mixin/MutationMixin.java +++ /dev/null @@ -1,19 +0,0 @@ -package org.cbioportal.web.mixin; - -import com.fasterxml.jackson.annotation.JsonProperty; - -public class MutationMixin { - - @JsonProperty("variantAllele") - private String tumorSeqAllele; - @JsonProperty("refseqMrnaId") - private String refseqMrnaId; - @JsonProperty("proteinPosStart") - private Integer proteinPosStart; - @JsonProperty("proteinPosEnd") - private Integer proteinPosEnd; - @JsonProperty("chr") - private String chr; - @JsonProperty("namespaceColumns") - private String annotationJSON; -} diff --git a/web/src/main/java/org/cbioportal/web/parameter/MutationFilter.java b/web/src/main/java/org/cbioportal/web/parameter/MutationFilter.java deleted file mode 100644 index 52ee7d646ba..00000000000 --- a/web/src/main/java/org/cbioportal/web/parameter/MutationFilter.java +++ /dev/null @@ -1,43 +0,0 @@ -package org.cbioportal.web.parameter; - -import javax.validation.constraints.AssertTrue; -import javax.validation.constraints.Size; -import java.util.List; - -public class MutationFilter { - - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - private List sampleIds; - private String sampleListId; - @Size(min = 1, max = PagingConstants.MAX_PAGE_SIZE) - private List entrezGeneIds; - - @AssertTrue - private boolean isEitherSampleListIdOrSampleIdsPresent() { - return sampleListId != null ^ sampleIds != null; - } - - public List getSampleIds() { - return sampleIds; - } - - public void setSampleIds(List sampleIds) { - this.sampleIds = sampleIds; - } - - public String getSampleListId() { - return sampleListId; - } - - public void setSampleListId(String sampleListId) { - this.sampleListId = sampleListId; - } - - public List getEntrezGeneIds() { - return entrezGeneIds; - } - - public void setEntrezGeneIds(List entrezGeneIds) { - this.entrezGeneIds = entrezGeneIds; - } -} diff --git a/web/src/main/java/org/cbioportal/web/parameter/VirtualStudy.java b/web/src/main/java/org/cbioportal/web/parameter/VirtualStudy.java deleted file mode 100644 index 9d6a52ce14a..00000000000 --- a/web/src/main/java/org/cbioportal/web/parameter/VirtualStudy.java +++ /dev/null @@ -1,47 +0,0 @@ -package org.cbioportal.web.parameter; - -import java.io.IOException; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.cbioportal.session_service.domain.Session; -import org.cbioportal.session_service.domain.SessionType; - -import com.fasterxml.jackson.annotation.JsonIgnore; -import com.fasterxml.jackson.annotation.JsonIgnoreProperties; -import com.fasterxml.jackson.databind.ObjectMapper; - -@JsonIgnoreProperties(ignoreUnknown = true) -public class VirtualStudy extends Session { - - private final Logger LOG = LoggerFactory.getLogger(VirtualStudy.class); - private VirtualStudyData data; - - @Override - public void setData(Object data) { - ObjectMapper mapper = new ObjectMapper(); - try { - this.data = mapper.readValue(mapper.writeValueAsString(data), VirtualStudyData.class); - } catch (IOException e) { - LOG.error("Error occurred", e); - } - } - - @Override - public VirtualStudyData getData() { - return data; - } - - @JsonIgnore - @Override - public String getSource() { - return super.getSource(); - } - - @JsonIgnore - @Override - public SessionType getType() { - return super.getType(); - } - -} diff --git a/web/src/main/java/org/cbioportal/web/util/GoogleAnalyticsInterceptor.java b/web/src/main/java/org/cbioportal/web/util/GoogleAnalyticsInterceptor.java deleted file mode 100644 index 0624cafef5f..00000000000 --- a/web/src/main/java/org/cbioportal/web/util/GoogleAnalyticsInterceptor.java +++ /dev/null @@ -1,117 +0,0 @@ -package org.cbioportal.web.util; - -import org.slf4j.*; - -import java.util.*; -import javax.servlet.http.*; -import javax.annotation.PostConstruct; -import java.util.concurrent.CompletableFuture; - -import org.springframework.http.*; -import org.springframework.web.client.*; -import org.springframework.web.servlet.handler.HandlerInterceptorAdapter; -import org.springframework.stereotype.Component; -import org.springframework.beans.factory.annotation.Value; -import org.springframework.util.LinkedMultiValueMap; - -@Component -public class GoogleAnalyticsInterceptor extends HandlerInterceptorAdapter { - - @Value("${google.analytics.tracking.code.api}") - private String trackingId; - - @Value("${google.analytics.application.client.id}") - private String clientId; - - private static HttpHeaders defaultHeaders; - private static LinkedMultiValueMap globalURIVariables; - private static final Logger LOG = LoggerFactory.getLogger(GoogleAnalyticsInterceptor.class); - private static boolean missingGoogleAnalyticsCredentials; - - @PostConstruct - private void initializeDefaultParams() { - - if (trackingId == null || trackingId.isEmpty()) { - missingGoogleAnalyticsCredentials = true; - } - if (clientId == null || clientId.isEmpty()) { - missingGoogleAnalyticsCredentials = true; - } - - if (missingGoogleAnalyticsCredentials) { - if (LOG.isInfoEnabled()) { - LOG.info("@PostContruct:"); - LOG.info("Google Analytics tracking id: " + ((trackingId == null) ? "null" : trackingId)); - LOG.info("Google Analytics client id: " + ((clientId == null) ? "null" : clientId)); - } - return; - } - - defaultHeaders = new HttpHeaders(); - defaultHeaders.setAccept(Arrays.asList(MediaType.ALL)); - defaultHeaders.setContentType(MediaType.APPLICATION_FORM_URLENCODED); - defaultHeaders.set(HttpHeaders.USER_AGENT, "cBioPortal API Reporting/1.0 via org.cbioportal.web.util.GoogleAnalyticsInterceptor"); - - globalURIVariables = new LinkedMultiValueMap(); - globalURIVariables.add("v", "1"); - globalURIVariables.add("dt", "request logged by GoogleAnalyticsInterceptor"); - globalURIVariables.add("t", "pageview"); - globalURIVariables.add("tid", trackingId); - globalURIVariables.add("cid", clientId); - globalURIVariables.add("dh", "cbioportal.org"); - } - - @Override - public void afterCompletion(HttpServletRequest request, HttpServletResponse response, Object handler, Exception ex) - throws Exception { - - if (invalidAfterCompletionArgs(response)) { - return; - } - - CompletableFuture.runAsync(() -> { - LinkedMultiValueMap thisTasksURIVariables = new LinkedMultiValueMap<>(); - thisTasksURIVariables.putAll(globalURIVariables); - thisTasksURIVariables.add("dp", request.getRequestURI()); - HttpEntity> requestEntity = - new HttpEntity>(thisTasksURIVariables, defaultHeaders); - try { - RestTemplate restTemplate = new RestTemplate(); - ResponseEntity responseEntity = - restTemplate.exchange("https://www.google-analytics.com/collect", HttpMethod.POST, requestEntity, String.class); - HttpStatus responseStatus = responseEntity.getStatusCode(); - if (responseStatus.is2xxSuccessful()) { - if (LOG.isInfoEnabled()) { - LOG.info("CompletableFuture.runAsync(): POST request successfully sent to Google Analytics: "); - LOG.info(requestEntity.toString()); - } - } - else { - if (LOG.isInfoEnabled()) { - LOG.info("CompletableFuture.runAsync(): POST request to Google Analytics failed. HTTP status code: " - + Integer.toString(responseStatus.value())); - } - } - } - catch(RestClientException e) { - e.printStackTrace(); - } - }); - } - - private boolean invalidAfterCompletionArgs(HttpServletResponse response) { - if (missingGoogleAnalyticsCredentials || response.getHeader("referer") != null) { - if (LOG.isInfoEnabled()) { - LOG.info("afterCompletion() cannot be completed:"); - if (missingGoogleAnalyticsCredentials) { - LOG.info("Invalid Google Analytics credentials (see @PostConstruct log entry)"); - } - else { - LOG.info("Response referer is not null"); - } - } - return true; - } - return false; - } -} diff --git a/web/src/main/java/org/cbioportal/web/util/ResettableHttpServletRequestFilter.java b/web/src/main/java/org/cbioportal/web/util/ResettableHttpServletRequestFilter.java deleted file mode 100644 index b0003e2fa15..00000000000 --- a/web/src/main/java/org/cbioportal/web/util/ResettableHttpServletRequestFilter.java +++ /dev/null @@ -1,37 +0,0 @@ -package org.cbioportal.web.util; - -import java.io.IOException; -import javax.servlet.*; -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; -import org.slf4j.LoggerFactory; -import org.slf4j.Logger; -import org.springframework.web.util.ContentCachingRequestWrapper; -import org.springframework.web.util.ContentCachingResponseWrapper; - - -/** - * - * @author ochoaa - */ -public class ResettableHttpServletRequestFilter implements Filter { - private Logger LOG = LoggerFactory.getLogger(ResettableHttpServletRequestFilter.class); - - @Override - public void init(FilterConfig aChain) throws ServletException { - // do nothing - } - - @Override - public void doFilter(ServletRequest aRequest, ServletResponse aResponse, FilterChain aChain) throws IOException, ServletException { - ContentCachingRequestWrapper wrappedRequest = new ContentCachingRequestWrapper((HttpServletRequest) aRequest); - ContentCachingResponseWrapper wrappedResponse = new ContentCachingResponseWrapper((HttpServletResponse) aResponse); - aChain.doFilter(wrappedRequest, wrappedResponse); - wrappedResponse.copyBodyToResponse(); - } - - @Override - public void destroy() { - // do nothing - } -} diff --git a/web/src/main/resources/applicationContext-logging.xml b/web/src/main/resources/applicationContext-logging.xml deleted file mode 100644 index b0a840aad9f..00000000000 --- a/web/src/main/resources/applicationContext-logging.xml +++ /dev/null @@ -1,16 +0,0 @@ - - - - - - - - - diff --git a/web/src/main/resources/applicationContext-proxy.xml b/web/src/main/resources/applicationContext-proxy.xml deleted file mode 100644 index cdb7d4334d1..00000000000 --- a/web/src/main/resources/applicationContext-proxy.xml +++ /dev/null @@ -1,30 +0,0 @@ - - - - - - - - - - - - classpath:portal.properties - file:///${PORTAL_HOME}/portal.properties - classpath:maven.properties - classpath:git.properties - - - - - - - - diff --git a/web/src/main/resources/applicationContext-url-shortener.xml b/web/src/main/resources/applicationContext-url-shortener.xml deleted file mode 100644 index f92bcfcb70c..00000000000 --- a/web/src/main/resources/applicationContext-url-shortener.xml +++ /dev/null @@ -1,29 +0,0 @@ - - - - - - - - - - - - classpath:portal.properties - file:///${PORTAL_HOME}/portal.properties - classpath:maven.properties - - - - - - - - diff --git a/web/src/main/resources/applicationContext-web.xml b/web/src/main/resources/applicationContext-web.xml deleted file mode 100644 index 73ab535f75e..00000000000 --- a/web/src/main/resources/applicationContext-web.xml +++ /dev/null @@ -1,77 +0,0 @@ - - - - - - - - - - - - classpath:portal.properties - file:///${PORTAL_HOME}/portal.properties - classpath:maven.properties - classpath:git.properties - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/web/src/test/java/org/cbioportal/web/CacheControllerTest.java b/web/src/test/java/org/cbioportal/web/CacheControllerTest.java deleted file mode 100644 index bb5217200f5..00000000000 --- a/web/src/test/java/org/cbioportal/web/CacheControllerTest.java +++ /dev/null @@ -1,171 +0,0 @@ -package org.cbioportal.web; - -import org.cbioportal.model.CancerStudy; -import org.cbioportal.persistence.StudyRepository; -import org.cbioportal.service.CacheService; -import org.cbioportal.service.exception.CacheOperationException; -import org.junit.Before; -import org.junit.Ignore; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.MediaType; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.test.util.ReflectionTestUtils; -import org.springframework.test.web.servlet.MockMvc; -import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; -import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.Arrays; -import java.util.List; - -import static org.mockito.Mockito.*; - -@RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration -public class CacheControllerTest { - - @Autowired - private WebApplicationContext wac; - - private MockMvc mockMvc; - - @Autowired - private CacheController cacheController; - - // ---- Imitate @MockBean annotations of Spring Boot - @Autowired - private CacheService cacheService; - @Bean - public CacheService cacheService() { - return mock(CacheService.class); - } - // ---- - - @Before - public void setUp() throws Exception { - reset(cacheService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - - @Test - public void clearAllCachesNoKeyProvided() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache")) - .andExpect(MockMvcResultMatchers.status().isBadRequest()); - verify(cacheService, never()).clearCaches(true); - } - - @Test - public void clearAllCachesUnauthorized() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache") - .header("X-API-KEY", "incorrect-key")) - .andExpect(MockMvcResultMatchers.status().isUnauthorized()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, never()).clearCaches(true); - } - - @Test - public void clearAllCachesSuccess() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, times(1)).clearCaches(true); - } - - @Test - public void clearAllCachesDisabled() throws Exception { - ReflectionTestUtils.setField(cacheController, "cacheEndpointEnabled", false); - mockMvc.perform(MockMvcRequestBuilders.delete("/cache") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isNotFound()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, never()).clearCaches(true); - ReflectionTestUtils.setField(cacheController, "cacheEndpointEnabled", true); - } - - @Test - public void clearAllCachesSkipSpringManaged() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache").param("springManagedCache", "false") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, times(1)).clearCaches(false); - } - - @Ignore // Unable to to configure context with the GlobalExceptionHandler ControllerAdvise. - @Test - public void clearAllCachesServiceException() throws Exception { - doThrow(CacheOperationException.class).when(cacheService).clearCaches(anyBoolean()); - mockMvc.perform(MockMvcRequestBuilders.delete("/cache") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isInternalServerError()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, times(1)).clearCaches(true); - } - - @Test - public void clearCacheForStudyNoKeyProvided() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache/study_es_0")) - .andExpect(MockMvcResultMatchers.status().isBadRequest()); - verify(cacheService, never()).clearCachesForStudy(anyString(), anyBoolean()); - } - - @Test - public void clearCacheForStudyUnauthorized() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache/study_es_0") - .header("X-API-KEY", "incorrect-key")) - .andExpect(MockMvcResultMatchers.status().isUnauthorized()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, never()).clearCachesForStudy(anyString(), anyBoolean()); - } - - @Test - public void clearCacheForStudySuccess() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache/study_es_0") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, times(1)).clearCachesForStudy(eq("study_es_0"), anyBoolean()); - } - - @Test - public void clearCacheForStudyDisabled() throws Exception { - ReflectionTestUtils.setField(cacheController, "cacheEndpointEnabled", false); - mockMvc.perform(MockMvcRequestBuilders.delete("/cache/study_es_0") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isNotFound()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, never()).clearCachesForStudy(anyString(), anyBoolean()); - ReflectionTestUtils.setField(cacheController, "cacheEndpointEnabled", true); - } - - @Test - public void clearCacheForStudySkipSpringManaged() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.delete("/cache/study_es_0").param("springManagedCache", "false") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, times(1)).clearCachesForStudy(anyString(), eq(false)); - } - - @Ignore // Unable to to configure context with the GlobalExceptionHandler ControllerAdvise. - @Test - public void clearCacheForStudyServiceException() throws Exception { - doThrow(CacheOperationException.class).when(cacheService).clearCachesForStudy(eq("study_es_0"), anyBoolean()); - mockMvc.perform(MockMvcRequestBuilders.delete("/cache/study_es_0") - .header("X-API-KEY", "correct-key")) - .andExpect(MockMvcResultMatchers.status().isInternalServerError()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.TEXT_PLAIN_VALUE)); - verify(cacheService, times(1)).clearCachesForStudy(anyString(), eq(true)); - } - -} diff --git a/web/src/test/java/org/cbioportal/web/CacheStatsControllerTest.java b/web/src/test/java/org/cbioportal/web/CacheStatsControllerTest.java deleted file mode 100644 index c832f1778c8..00000000000 --- a/web/src/test/java/org/cbioportal/web/CacheStatsControllerTest.java +++ /dev/null @@ -1,113 +0,0 @@ -package org.cbioportal.web; - -import org.cbioportal.service.CacheStatisticsService; -import org.cbioportal.service.exception.CacheNotFoundException; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mockito; -import org.mockito.invocation.InvocationOnMock; -import org.mockito.stubbing.Answer; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.beans.factory.annotation.Qualifier; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.MediaType; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.TestPropertySource; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.test.web.servlet.MockMvc; -import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; -import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.ArrayList; -import java.util.List; - -@RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@TestPropertySource( - properties = "persistence.cache_type=redis" -) -@Configuration -public class CacheStatsControllerTest { - - public static final String VALID_CACHE_ALIAS = "GeneralRepositoryCache"; - - public static final String INVALID_CACHE_ALIAS = "InvalidCacheForTesting"; - - @Autowired - private WebApplicationContext wac; - - private MockMvc mockMvc; - - @Autowired - @Qualifier("mockCacheStatisticsService") - public CacheStatisticsService cacheStatisticsService; - - @Before - public void setUp() throws Exception { - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - - @Bean - @Qualifier("mockCacheStatisticsService") - public static CacheStatisticsService cacheStatisticsService() throws CacheNotFoundException { - CacheStatisticsService cacheStatisticsServiceMock = Mockito.mock(CacheStatisticsService.class); - Mockito.when(cacheStatisticsServiceMock.getKeyCountsPerClass(Mockito.anyString())).thenAnswer(new Answer>() { - public List answer(InvocationOnMock invocation) throws CacheNotFoundException { - Object[] args = invocation.getArguments(); - String cacheAlias = (String)args[0]; - if (VALID_CACHE_ALIAS.equals(cacheAlias)) { - return new ArrayList(); - } - throw new CacheNotFoundException(cacheAlias); - } - }); - Mockito.when(cacheStatisticsServiceMock.getKeysInCache(Mockito.anyString())).thenAnswer(new Answer>() { - public List answer(InvocationOnMock invocation) throws CacheNotFoundException { - Object[] args = invocation.getArguments(); - String cacheAlias = (String)args[0]; - if (VALID_CACHE_ALIAS.equals(cacheAlias)) { - return new ArrayList(); - } - throw new CacheNotFoundException(cacheAlias); - } - }); - return cacheStatisticsServiceMock; - } - - @Test - public void testGetKeysInCache() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.get("/" + VALID_CACHE_ALIAS + "/keysInCache") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)); - } - - @Test - public void testGetKeysInInvalidCache() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.get("/" + INVALID_CACHE_ALIAS + "/keysInCache") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isNotFound()); - } - - @Test - public void testGetKeyCountsPerClass() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.get("/" + VALID_CACHE_ALIAS + "/keyCountsPerClass") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)); - } - - @Test - public void testGetKeyCountsPerClassInvalidCache() throws Exception { - mockMvc.perform(MockMvcRequestBuilders.get("/" + INVALID_CACHE_ALIAS + "/keyCountsPerClass") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isNotFound()); - } - -} diff --git a/web/src/test/java/org/cbioportal/web/ClinicalAttributeControllerTest.java b/web/src/test/java/org/cbioportal/web/ClinicalAttributeControllerTest.java deleted file mode 100644 index 47995c19533..00000000000 --- a/web/src/test/java/org/cbioportal/web/ClinicalAttributeControllerTest.java +++ /dev/null @@ -1,354 +0,0 @@ -package org.cbioportal.web; - -import com.fasterxml.jackson.databind.ObjectMapper; -import org.cbioportal.model.ClinicalAttribute; -import org.cbioportal.model.ClinicalAttributeCount; -import org.cbioportal.model.meta.BaseMeta; -import org.cbioportal.service.ClinicalAttributeService; -import org.cbioportal.service.exception.ClinicalAttributeNotFoundException; -import org.cbioportal.web.parameter.HeaderKeyConstants; -import org.cbioportal.web.parameter.ClinicalAttributeCountFilter; -import org.cbioportal.web.parameter.SampleIdentifier; -import org.hamcrest.Matchers; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mockito; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.MediaType; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.test.web.servlet.MockMvc; -import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; -import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; -import java.util.ArrayList; -import java.util.List; - -@RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration -public class ClinicalAttributeControllerTest { - - private static final String TEST_ATTR_ID_1 = "test_attr_id_1"; - private static final int TEST_CANCER_STUDY_ID_1 = 1; - private static final String TEST_CANCER_STUDY_IDENTIFIER_1 = "test_study_1"; - private static final String TEST_SAMPLE_ID_1 = "test_sample_id_1"; - private static final String TEST_DATATYPE_1 = "test_datatype_1"; - private static final String TEST_DESCRIPTION_1 = "test_description_1"; - private static final String TEST_DISPLAY_NAME_1 = "test_display_name_1"; - private static final boolean TEST_PATIENT_ATTRIBUTE_1 = true; - private static final String TEST_PRIORITY_1 = "test_priority_1"; - private static final Integer TEST_ATTRIBUTE_COUNT_1 = 3; - private static final String TEST_ATTR_ID_2 = "test_attr_id_2"; - private static final int TEST_CANCER_STUDY_ID_2 = 2; - private static final String TEST_CANCER_STUDY_IDENTIFIER_2 = "test_study_2"; - private static final String TEST_SAMPLE_ID_2 = "test_sample_id_2"; - private static final String TEST_DATATYPE_2 = "test_datatype_2"; - private static final String TEST_DESCRIPTION_2 = "test_description_2"; - private static final String TEST_DISPLAY_NAME_2 = "test_display_name_2"; - private static final boolean TEST_PATIENT_ATTRIBUTE_2 = false; - private static final String TEST_PRIORITY_2 = "test_priority_2"; - private static final Integer TEST_ATTRIBUTE_COUNT_2 = 1; - - @Autowired - private WebApplicationContext wac; - - @Autowired - private ClinicalAttributeService clinicalAttributeService; - - private ObjectMapper objectMapper = new ObjectMapper(); - - private MockMvc mockMvc; - - @Bean - public ClinicalAttributeService clinicalAttributeService() { - return Mockito.mock(ClinicalAttributeService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(clinicalAttributeService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - - @Test - public void getAllClinicalAttributesDefaultProjection() throws Exception { - - List clinicalAttributes = createExampleClinicalAttributes(); - - Mockito.when(clinicalAttributeService.getAllClinicalAttributes(Mockito.any(), Mockito.any(), - Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(clinicalAttributes); - - mockMvc.perform(MockMvcRequestBuilders.get("/clinical-attributes") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].cancerStudyId").doesNotExist()) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].datatype").value(TEST_DATATYPE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].displayName").value(TEST_DISPLAY_NAME_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].description").value(TEST_DESCRIPTION_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].priority").value(TEST_PRIORITY_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].cancerStudyId").doesNotExist()) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].datatype").value(TEST_DATATYPE_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].displayName").value(TEST_DISPLAY_NAME_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].description").value(TEST_DESCRIPTION_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].priority").value(TEST_PRIORITY_2)); - } - - @Test - public void getAllClinicalAttributesMetaProjection() throws Exception { - - BaseMeta baseMeta = new BaseMeta(); - baseMeta.setTotalCount(2); - - Mockito.when(clinicalAttributeService.getMetaClinicalAttributes()).thenReturn(baseMeta); - - mockMvc.perform(MockMvcRequestBuilders.get("/clinical-attributes") - .param("projection", "META")) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); - } - - @Test - public void getAllClinicalAttributesInStudyDefaultProjection() throws Exception { - - List clinicalAttributes = createExampleClinicalAttributes(); - - Mockito.when(clinicalAttributeService.getAllClinicalAttributesInStudy(Mockito.any(), Mockito.any(), - Mockito.any(), Mockito.any(), Mockito.any(), Mockito.any())) - .thenReturn(clinicalAttributes); - - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/clinical-attributes") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].cancerStudyId").doesNotExist()) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].datatype").value(TEST_DATATYPE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].displayName").value(TEST_DISPLAY_NAME_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].description").value(TEST_DESCRIPTION_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].priority").value(TEST_PRIORITY_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].cancerStudyId").doesNotExist()) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].datatype").value(TEST_DATATYPE_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].displayName").value(TEST_DISPLAY_NAME_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].description").value(TEST_DESCRIPTION_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].priority").value(TEST_PRIORITY_2)); - } - - @Test - public void getAllClinicalAttributesInStudyMetaProjection() throws Exception { - - BaseMeta baseMeta = new BaseMeta(); - baseMeta.setTotalCount(2); - - Mockito.when(clinicalAttributeService.getMetaClinicalAttributesInStudy(Mockito.anyString())) - .thenReturn(baseMeta); - - mockMvc.perform(MockMvcRequestBuilders.get("/studies/test_study_id/clinical-attributes") - .param("projection", "META")) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.header().string(HeaderKeyConstants.TOTAL_COUNT, "2")); - } - - @Test - public void getClinicalAttributeInStudyNotFound() throws Exception { - - Mockito.when(clinicalAttributeService.getClinicalAttribute(Mockito.anyString(), Mockito.anyString())).thenThrow( - new ClinicalAttributeNotFoundException("test_study_id", "test_clinical_attribute_id")); - - mockMvc.perform(MockMvcRequestBuilders - .get("/studies/test_study_id/clinical-attributes/test_clinical_attribute_id") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isNotFound()) - .andExpect(MockMvcResultMatchers.jsonPath("$.message") - .value("Clinical attribute not found in study test_study_id: test_clinical_attribute_id")); - } - - @Test - public void getClinicalAttributeInStudy() throws Exception { - - ClinicalAttribute clinicalAttribute = new ClinicalAttribute(); - clinicalAttribute.setAttrId(TEST_ATTR_ID_1); - clinicalAttribute.setCancerStudyId(TEST_CANCER_STUDY_ID_1); - clinicalAttribute.setCancerStudyIdentifier(TEST_CANCER_STUDY_IDENTIFIER_1); - clinicalAttribute.setDatatype(TEST_DATATYPE_1); - clinicalAttribute.setDescription(TEST_DESCRIPTION_1); - clinicalAttribute.setDisplayName(TEST_DISPLAY_NAME_1); - clinicalAttribute.setPatientAttribute(TEST_PATIENT_ATTRIBUTE_1); - clinicalAttribute.setPriority(TEST_PRIORITY_1); - - Mockito.when(clinicalAttributeService.getClinicalAttribute(Mockito.anyString(), Mockito.anyString())) - .thenReturn(clinicalAttribute); - - mockMvc.perform(MockMvcRequestBuilders - .get("/studies/test_study_id/clinical-attributes/test_clinical_attribute_id") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$.cancerStudyId").doesNotExist()) - .andExpect(MockMvcResultMatchers.jsonPath("$.clinicalAttributeId").value(TEST_ATTR_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$.studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$.datatype").value(TEST_DATATYPE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$.displayName").value(TEST_DISPLAY_NAME_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$.patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$.description").value(TEST_DESCRIPTION_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$.priority").value(TEST_PRIORITY_1)); - } - - @Test - public void fetchClinicalAttributes() throws Exception { - - List clinicalAttributes = createExampleClinicalAttributes(); - - Mockito.when(clinicalAttributeService.fetchClinicalAttributes(Mockito.anyList(), Mockito.anyString())) - .thenReturn(clinicalAttributes); - - List studyIds = new ArrayList<>(); - studyIds.add("study_id_1"); - studyIds.add("study_id_2"); - - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-attributes/fetch") - .accept(MediaType.APPLICATION_JSON) - .contentType(MediaType.APPLICATION_JSON) - .content(objectMapper.writeValueAsString(studyIds))) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].cancerStudyId").doesNotExist()) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].datatype").value(TEST_DATATYPE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].displayName").value(TEST_DISPLAY_NAME_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].description").value(TEST_DESCRIPTION_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].priority").value(TEST_PRIORITY_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].cancerStudyId").doesNotExist()) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].studyId").value(TEST_CANCER_STUDY_IDENTIFIER_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].datatype").value(TEST_DATATYPE_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].displayName").value(TEST_DISPLAY_NAME_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].patientAttribute").value(TEST_PATIENT_ATTRIBUTE_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].description").value(TEST_DESCRIPTION_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].priority").value(TEST_PRIORITY_2)); - } - - - @Test - public void getClinicalAttributeCountsBySampleIds() throws Exception { - - List clinicalAttributes = new ArrayList<>(); - ClinicalAttributeCount clinicalAttributeCount1 = new ClinicalAttributeCount(); - clinicalAttributeCount1.setAttrId(TEST_ATTR_ID_1); - clinicalAttributeCount1.setCount(TEST_ATTRIBUTE_COUNT_1); - clinicalAttributes.add(clinicalAttributeCount1); - ClinicalAttributeCount clinicalAttributeCount2 = new ClinicalAttributeCount(); - clinicalAttributeCount2.setAttrId(TEST_ATTR_ID_2); - clinicalAttributeCount2.setCount(TEST_ATTRIBUTE_COUNT_2); - clinicalAttributes.add(clinicalAttributeCount2); - - Mockito.when(clinicalAttributeService.getClinicalAttributeCountsBySampleIds(Mockito.any(), - Mockito.any())).thenReturn(clinicalAttributes); - - ClinicalAttributeCountFilter clinicalAttributeCountFilter = new ClinicalAttributeCountFilter(); - List sampleIdentifierList = new ArrayList<>(); - SampleIdentifier sampleIdentifier1 = new SampleIdentifier(); - sampleIdentifier1.setSampleId(TEST_SAMPLE_ID_1); - sampleIdentifier1.setStudyId(TEST_CANCER_STUDY_IDENTIFIER_1); - sampleIdentifierList.add(sampleIdentifier1); - SampleIdentifier sampleIdentifier2 = new SampleIdentifier(); - sampleIdentifier2.setSampleId(TEST_SAMPLE_ID_2); - sampleIdentifier2.setStudyId(TEST_CANCER_STUDY_IDENTIFIER_1); - sampleIdentifierList.add(sampleIdentifier2); - clinicalAttributeCountFilter.setSampleIdentifiers(sampleIdentifierList); - - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-attributes/counts/fetch") - .accept(MediaType.APPLICATION_JSON) - .contentType(MediaType.APPLICATION_JSON) - .content(objectMapper.writeValueAsString(clinicalAttributeCountFilter))) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].count").value(TEST_ATTRIBUTE_COUNT_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].count").value(TEST_ATTRIBUTE_COUNT_2)); - } - - @Test - public void getClinicalAttributeCountsBySampleListId() throws Exception { - - List clinicalAttributes = new ArrayList<>(); - ClinicalAttributeCount clinicalAttributeCount1 = new ClinicalAttributeCount(); - clinicalAttributeCount1.setAttrId(TEST_ATTR_ID_1); - clinicalAttributeCount1.setCount(TEST_ATTRIBUTE_COUNT_1); - clinicalAttributes.add(clinicalAttributeCount1); - ClinicalAttributeCount clinicalAttributeCount2 = new ClinicalAttributeCount(); - clinicalAttributeCount2.setAttrId(TEST_ATTR_ID_2); - clinicalAttributeCount2.setCount(TEST_ATTRIBUTE_COUNT_2); - clinicalAttributes.add(clinicalAttributeCount2); - - Mockito.when(clinicalAttributeService.getClinicalAttributeCountsBySampleListId(Mockito.anyString())).thenReturn(clinicalAttributes); - - ClinicalAttributeCountFilter clinicalAttributeCountFilter = new ClinicalAttributeCountFilter(); - clinicalAttributeCountFilter.setSampleListId("test_sample_list_id"); - - mockMvc.perform(MockMvcRequestBuilders.post("/clinical-attributes/counts/fetch") - .accept(MediaType.APPLICATION_JSON) - .contentType(MediaType.APPLICATION_JSON) - .content(objectMapper.writeValueAsString(clinicalAttributeCountFilter)) - .param("projection", "DETAILED")) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].clinicalAttributeId").value(TEST_ATTR_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].count").value(TEST_ATTRIBUTE_COUNT_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].clinicalAttributeId").value(TEST_ATTR_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].count").value(TEST_ATTRIBUTE_COUNT_2)); - } - - private List createExampleClinicalAttributes() { - - List clinicalAttributeList = new ArrayList<>(); - ClinicalAttribute clinicalAttribute1 = new ClinicalAttribute(); - clinicalAttribute1.setAttrId(TEST_ATTR_ID_1); - clinicalAttribute1.setCancerStudyId(TEST_CANCER_STUDY_ID_1); - clinicalAttribute1.setCancerStudyIdentifier(TEST_CANCER_STUDY_IDENTIFIER_1); - clinicalAttribute1.setDatatype(TEST_DATATYPE_1); - clinicalAttribute1.setDescription(TEST_DESCRIPTION_1); - clinicalAttribute1.setDisplayName(TEST_DISPLAY_NAME_1); - clinicalAttribute1.setPatientAttribute(TEST_PATIENT_ATTRIBUTE_1); - clinicalAttribute1.setPriority(TEST_PRIORITY_1); - clinicalAttributeList.add(clinicalAttribute1); - ClinicalAttribute clinicalAttribute2 = new ClinicalAttribute(); - clinicalAttribute2.setAttrId(TEST_ATTR_ID_2); - clinicalAttribute2.setCancerStudyId(TEST_CANCER_STUDY_ID_2); - clinicalAttribute2.setCancerStudyIdentifier(TEST_CANCER_STUDY_IDENTIFIER_2); - clinicalAttribute2.setDatatype(TEST_DATATYPE_2); - clinicalAttribute2.setDescription(TEST_DESCRIPTION_2); - clinicalAttribute2.setDisplayName(TEST_DISPLAY_NAME_2); - clinicalAttribute2.setPatientAttribute(TEST_PATIENT_ATTRIBUTE_2); - clinicalAttribute2.setPriority(TEST_PRIORITY_2); - clinicalAttributeList.add(clinicalAttribute2); - return clinicalAttributeList; - } -} diff --git a/web/src/test/java/org/cbioportal/web/GenericAssayControllerTest.java b/web/src/test/java/org/cbioportal/web/GenericAssayControllerTest.java deleted file mode 100644 index 92aeaa55f12..00000000000 --- a/web/src/test/java/org/cbioportal/web/GenericAssayControllerTest.java +++ /dev/null @@ -1,172 +0,0 @@ -package org.cbioportal.web; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.HashMap; -import java.util.List; - -import com.fasterxml.jackson.databind.ObjectMapper; - -import org.cbioportal.model.GenericAssayData; -import org.cbioportal.model.meta.GenericAssayMeta; -import org.cbioportal.service.GenericAssayService; -import org.cbioportal.web.parameter.GenericAssayFilter; -import org.cbioportal.web.parameter.GenericAssayDataMultipleStudyFilter; -import org.cbioportal.web.parameter.GenericAssayMetaFilter; -import org.cbioportal.web.parameter.SampleMolecularIdentifier; -import org.hamcrest.Matchers; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mockito; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.MediaType; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.test.web.servlet.MockMvc; -import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; -import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -@RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration -public class GenericAssayControllerTest { - - private static final String PROF_ID = "test_prof_id"; - private static final String ENTITY_TYPE = "test_type"; - public static final String GENERIC_ASSAY_STABLE_ID_1 = "genericAssayStableId1"; - public static final String GENERIC_ASSAY_STABLE_ID_2 = "genericAssayStableId2"; - public static final String GENERIC_ASSAY_STABLE_ID_3 = "genericAssayStableId3"; - public static final String GENERIC_ASSAY_STABLE_ID_4 = "genericAssayStableId4"; - private static final String SAMPLE_ID = "test_sample_stable_id_1"; - private static final String VALUE_1 = "0.25"; - private static final String VALUE_2 = "-0.75"; - private static final String VALUE_3 = ""; - private static final String VALUE_4 = "NA"; - private static final String TEST_NAME = "name"; - private static final String TEST_NAME_VALUE = "test_name"; - private static final String TEST_DESCRIPTION = "description"; - private static final String TEST_DESCRIPTION_VALUE = "test_description"; - private static final HashMap GENERIC_ENTITY_META_PROPERTIES = new HashMap() {{ - put(TEST_NAME,TEST_NAME_VALUE); - put(TEST_DESCRIPTION,TEST_DESCRIPTION_VALUE); - }}; - - @Autowired - private WebApplicationContext wac; - - @Autowired - private GenericAssayService genericAssayService; - private MockMvc mockMvc; - - private ObjectMapper objectMapper = new ObjectMapper(); - - @Bean - public GenericAssayService genericAssayService() { - return Mockito.mock(GenericAssayService.class); - } - - @Before - public void setUp() throws Exception { - - Mockito.reset(genericAssayService); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - - @Test - public void testGenericAssayMetaGetMolecularProfileId() throws Exception { - List genericAssayMetaItems = createGenericAssayMetaItemsList(); - - Mockito.when(genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genericAssayMetaItems); - - mockMvc.perform(MockMvcRequestBuilders.get("/generic-assay-meta/" + PROF_ID) - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].entityType").value(ENTITY_TYPE)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].stableId").value(GENERIC_ASSAY_STABLE_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].entityType").value(ENTITY_TYPE)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].stableId").value(GENERIC_ASSAY_STABLE_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_NAME))) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_NAME_VALUE))) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_DESCRIPTION))) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_DESCRIPTION_VALUE))); - } - - - @Test - public void testGenericAssayMetaGetGenericAssayStableId() throws Exception { - List genericAssayMetaSingleItem = createGenericAssayMetaSingleItem(); - - Mockito.when(genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genericAssayMetaSingleItem); - - mockMvc.perform(MockMvcRequestBuilders.get("/generic-assay-meta/generic-assay/" + GENERIC_ASSAY_STABLE_ID_2) - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(1))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].entityType").value(ENTITY_TYPE)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].stableId").value(GENERIC_ASSAY_STABLE_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasKey(TEST_NAME))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasValue(TEST_NAME_VALUE))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasKey(TEST_DESCRIPTION))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].genericEntityMetaProperties", Matchers.hasValue(TEST_DESCRIPTION_VALUE))); - } - - @Test - public void testGenericAssayMetaFetch() throws Exception { - List genericAssayMetaItems = createGenericAssayMetaItemsList(); - List genericAssayStableIds = Arrays.asList(GENERIC_ASSAY_STABLE_ID_1, GENERIC_ASSAY_STABLE_ID_2); - GenericAssayMetaFilter genericAssayMetaFilter = new GenericAssayMetaFilter(); - genericAssayMetaFilter.setGenericAssayStableIds(genericAssayStableIds); - - Mockito.when(genericAssayService.getGenericAssayMetaByStableIdsAndMolecularIds(Mockito.any(), Mockito.any(), Mockito.any())).thenReturn(genericAssayMetaItems); - - mockMvc.perform(MockMvcRequestBuilders.post("/generic_assay_meta/fetch") - .accept(MediaType.APPLICATION_JSON) - .contentType(MediaType.APPLICATION_JSON) - .content(objectMapper.writeValueAsString(genericAssayMetaFilter))) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$", Matchers.hasSize(2))) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].entityType").value(ENTITY_TYPE)) - .andExpect(MockMvcResultMatchers.jsonPath("$[0].stableId").value(GENERIC_ASSAY_STABLE_ID_1)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].entityType").value(ENTITY_TYPE)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].stableId").value(GENERIC_ASSAY_STABLE_ID_2)) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_NAME))) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_NAME_VALUE))) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasKey(TEST_DESCRIPTION))) - .andExpect(MockMvcResultMatchers.jsonPath("$[1].genericEntityMetaProperties", Matchers.hasValue(TEST_DESCRIPTION_VALUE))); - } - - private List createGenericAssayMetaSingleItem() { - - List genericAssayMetaItems = new ArrayList<>(); - - GenericAssayMeta item2 = new GenericAssayMeta(ENTITY_TYPE, GENERIC_ASSAY_STABLE_ID_2, GENERIC_ENTITY_META_PROPERTIES); - genericAssayMetaItems.add(item2); - - return genericAssayMetaItems; - } - - private List createGenericAssayMetaItemsList() { - - List genericAssayMetaItems = new ArrayList<>(); - - GenericAssayMeta item1 = new GenericAssayMeta(ENTITY_TYPE, GENERIC_ASSAY_STABLE_ID_1); - genericAssayMetaItems.add(item1); - - GenericAssayMeta item2 = new GenericAssayMeta(ENTITY_TYPE, GENERIC_ASSAY_STABLE_ID_2, GENERIC_ENTITY_META_PROPERTIES); - genericAssayMetaItems.add(item2); - - return genericAssayMetaItems; - } -} \ No newline at end of file diff --git a/web/src/test/java/org/cbioportal/web/InfoControllerTest.java b/web/src/test/java/org/cbioportal/web/InfoControllerTest.java deleted file mode 100644 index fa78cbd25d1..00000000000 --- a/web/src/test/java/org/cbioportal/web/InfoControllerTest.java +++ /dev/null @@ -1,44 +0,0 @@ -package org.cbioportal.web; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.MediaType; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.test.web.servlet.MockMvc; -import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; -import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -@RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration -public class InfoControllerTest { - - @Autowired - private WebApplicationContext wac; - - private MockMvc mockMvc; - - @Before - public void setUp() throws Exception { - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - - @Test - public void getInfo() throws Exception { - - mockMvc.perform(MockMvcRequestBuilders.get("/info") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.content().contentTypeCompatibleWith(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.jsonPath("$.portalVersion").value("test_portal_version")) - .andExpect(MockMvcResultMatchers.jsonPath("$.dbVersion").value("test_db_version")); - } -} diff --git a/web/src/test/java/org/cbioportal/web/StaticDataTimestampControllerTest.java b/web/src/test/java/org/cbioportal/web/StaticDataTimestampControllerTest.java deleted file mode 100644 index 61ed230fd26..00000000000 --- a/web/src/test/java/org/cbioportal/web/StaticDataTimestampControllerTest.java +++ /dev/null @@ -1,54 +0,0 @@ -package org.cbioportal.web; - -import org.cbioportal.service.StaticDataTimestampService; -import org.hamcrest.Matchers; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mockito; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.http.MediaType; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.test.web.servlet.MockMvc; -import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; -import org.springframework.test.web.servlet.result.MockMvcResultMatchers; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; - -import java.util.HashMap; - -@RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration("/applicationContext-web-test.xml") -@Configuration -public class StaticDataTimestampControllerTest { - @Autowired - private WebApplicationContext wac; - - @Autowired - private StaticDataTimestampService service; - - private MockMvc mockMvc; - - @Before - public void setUp() throws Exception { - Mockito.reset(service); - mockMvc = MockMvcBuilders.webAppContextSetup(wac).build(); - } - - @Test - public void getAllTimestamps() throws Exception { - HashMap pairs = new HashMap<>(); - pairs.put("gene", "1997-08-13 22:00:00"); - Mockito.when(service.getTimestamps(Mockito.anyList())).thenReturn(pairs); - - mockMvc.perform(MockMvcRequestBuilders.get("/timestamps") - .accept(MediaType.APPLICATION_JSON)) - .andExpect(MockMvcResultMatchers.status().isOk()) - .andExpect(MockMvcResultMatchers.jsonPath("$.gene").value("1997-08-13 22:00:00")); - } -} \ No newline at end of file diff --git a/web/src/test/java/org/cbioportal/web/config/RestAuthenticationEntryPoint.java b/web/src/test/java/org/cbioportal/web/config/RestAuthenticationEntryPoint.java deleted file mode 100644 index bdd259ccce4..00000000000 --- a/web/src/test/java/org/cbioportal/web/config/RestAuthenticationEntryPoint.java +++ /dev/null @@ -1,52 +0,0 @@ -/* - * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.web.config; - -import java.io.IOException; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.springframework.security.core.AuthenticationException; -import org.springframework.security.web.AuthenticationEntryPoint; -import org.springframework.stereotype.Component; - -@Component -public class RestAuthenticationEntryPoint implements AuthenticationEntryPoint { - - @Override - public void commence( HttpServletRequest request, HttpServletResponse response, - AuthenticationException authException ) throws IOException{ - response.sendError( HttpServletResponse.SC_UNAUTHORIZED, "Unauthorized" ); - } -} diff --git a/web/src/test/java/org/cbioportal/web/config/TokenAuthenticationSuccessHandler.java b/web/src/test/java/org/cbioportal/web/config/TokenAuthenticationSuccessHandler.java deleted file mode 100644 index 29ce1b7e7e7..00000000000 --- a/web/src/test/java/org/cbioportal/web/config/TokenAuthenticationSuccessHandler.java +++ /dev/null @@ -1,48 +0,0 @@ -/* - * Copyright (c) 2018 Memorial Sloan-Kettering Cancer Center. - * - * This library is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS - * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder - * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no - * obligations to provide maintenance, support, updates, enhancements or - * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be - * liable to any party for direct, indirect, special, incidental or - * consequential damages, including lost profits, arising out of the use of this - * software and its documentation, even if Memorial Sloan-Kettering Cancer - * Center has been advised of the possibility of such damage. - */ - -/* - * This file is part of cBioPortal. - * - * cBioPortal is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . -*/ - -package org.cbioportal.web.config; - -import javax.servlet.http.HttpServletRequest; -import javax.servlet.http.HttpServletResponse; - -import org.springframework.security.core.Authentication; -import org.springframework.security.web.authentication.AuthenticationSuccessHandler; - -public class TokenAuthenticationSuccessHandler implements AuthenticationSuccessHandler { - - @Override - public void onAuthenticationSuccess(HttpServletRequest request, HttpServletResponse response, Authentication authentication) { - // We do not need to do anything extra on REST authentication success, because there is no page to redirect to - } - -} diff --git a/web/src/test/resources/applicationContext-security-test.xml b/web/src/test/resources/applicationContext-security-test.xml deleted file mode 100644 index b8c32b77ce5..00000000000 --- a/web/src/test/resources/applicationContext-security-test.xml +++ /dev/null @@ -1,48 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/web/src/test/resources/applicationContext-web-test.xml b/web/src/test/resources/applicationContext-web-test.xml deleted file mode 100644 index 7ddf28340cb..00000000000 --- a/web/src/test/resources/applicationContext-web-test.xml +++ /dev/null @@ -1,33 +0,0 @@ - - - - - - - - - - - - - - - classpath:test.properties - - - - - - - - diff --git a/web/src/test/resources/logback.xml b/web/src/test/resources/logback.xml deleted file mode 100644 index 9d21a927c45..00000000000 --- a/web/src/test/resources/logback.xml +++ /dev/null @@ -1,24 +0,0 @@ - - - - - %d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n - - - - - - - - - - - \ No newline at end of file diff --git a/web/src/test/resources/test.properties b/web/src/test/resources/test.properties deleted file mode 100644 index fa7fb58e6c0..00000000000 --- a/web/src/test/resources/test.properties +++ /dev/null @@ -1,2 +0,0 @@ -cache.endpoint.enabled=true -cache.endpoint.api-key=correct-key